SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47490 chr2L 52564 52591 jockey 8 5102 5.5 5.0 5.2 1.3 5132 chr2L 47459 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-491 2 chr2L 73791 73808 chr2L 73899 73917 7 108 6.0 2.5 4.2 1.3 126 chr2L 73791 3` UTR,intron CR44987 -,galectin + chr2L 73854 intron galectin + chr2L 73917 intron galectin + chr2L_7_70001 chr2L_70001 RAL-491 3 chr2L 263303 263313 chr2L 263449 263454 5 145 4.5 1.5 3.0 1.2 151 chr2L 263303 intron,3` UTR CG3645 -,CG17075 - chr2L 263378 intron,3` UTR CG3645 -,CG17075 - chr2L 263454 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-491 4 chr2L 325129 325154 chr2L 325204 325231 5 75 5.5 3.0 4.2 1.0 102 chr2L 325129 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-491 5 chr2L 347887 347914 chr2L 355387 355414 blood 6 7498 4.5 3.5 4.0 1.2 7527 chr2L 347887 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355414 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-491 6 chr2L 686927 686951 chr2L 695963 695976 roo 5 9031 1.0 5.0 3.0 1.2 9049 chr2L 686927 intron ds - chr2L 691452 intron ds - chr2L 695976 intron ds - chr2L_5_690001 chr2L_690001 RAL-491 7 chr2L 764573 764593 chr2L 764654 764674 6 81 1.5 3.0 2.2 1.9 101 chr2L 764573 intergenic not near genes chr2L 764624 intergenic not near genes chr2L 764674 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-491 8 chr2L 796241 796254 chr2L 796369 796385 4 130 0.5 3.0 1.8 1.4 144 chr2L 796241 intergenic not near genes chr2L 796313 intergenic not near genes chr2L 796385 intergenic not near genes chr2L_4_795001 chr2L_795001 RAL-491 9 chr2L 821048 821076 chr2L 821133 821161 7 82 2.5 1.0 1.8 2.5 113 chr2L 821048 3` UTR Clp + chr2L 821104 3` UTR Clp + chr2L 821161 3` UTR Clp + chr2L_7_820001 chr2L_820001 RAL-491 10 chr2L 885224 885239 chr2L 885392 885419 7 178 3.5 3.0 3.2 1.7 195 chr2L 885224 intergenic CG15824 - chr2L 885322 intergenic CG15824 - chr2L 885419 intergenic CG15824 - chr2L_7_885001 chr2L_885001 RAL-491 11 chr2L 906559 906573 chr2L 906627 906654 5 77 0.0 1.5 0.8 2.8 95 chr2L 906559 intergenic not near genes chr2L 906606 intergenic not near genes chr2L 906654 intergenic not near genes chr2L_5_905001 chr2L_905001 RAL-491 12 chr2L 931633 931658 chr2L 931722 931748 7 89 1.0 1.5 1.2 3.2 115 chr2L 931633 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931748 intron CG4341 + chr2L_7_930001 chr2L_930001 RAL-491 13 chr2L 953502 953516 chr2L 953585 953586 4 78 3.0 3.5 3.2 1.0 84 chr2L 953502 exon CG4341 + chr2L 953544 intron CG4341 + chr2L 953586 intron CG4341 + chr2L_4_950001 chr2L_950001 RAL-491 14 chr2L 953517 953527 chr2L 953583 953612 5 74 3.0 3.5 3.2 1.2 95 chr2L 953517 intron CG4341 + chr2L 953564 intron CG4341 + chr2L 953612 intron CG4341 + chr2L_5_950001 chr2L_950001 RAL-491 15 chr2L 964560 964574 chr2L 964643 964658 6 83 1.5 5.5 3.5 1.3 98 chr2L 964560 intergenic not near genes chr2L 964609 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_6_960001 chr2L_960001 RAL-491 16 chr2L 976756 976776 chr2L 976833 976853 4 76 2.0 1.5 1.8 1.4 97 chr2L 976756 intergenic not near genes chr2L 976804 intergenic not near genes chr2L 976853 intergenic not near genes chr2L_4_975001 chr2L_975001 RAL-491 17 chr2L 976877 976909 chr2L 984513 984544 roo 8 7636 4.5 0.0 2.2 2.5 7667 chr2L 976877 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-491 18 chr2L 1042608 1042627 chr2L 1042694 1042708 4 86 2.0 0.0 1.0 2.0 100 chr2L 1042608 intron IA-2 - chr2L 1042658 intron IA-2 - chr2L 1042708 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-491 19 chr2L 1156858 1156876 chr2L 1156963 1156971 5 102 3.5 2.5 3.0 1.2 113 chr2L 1156858 intron capt - chr2L 1156914 intron capt - chr2L 1156971 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-491 20 chr2L 1203725 1203755 chr2L 1203821 1203851 9 92 3.5 3.0 3.2 2.1 126 chr2L 1203725 intergenic CG14342 + chr2L 1203788 intergenic CG14342 + chr2L 1203851 intergenic CG14342 + chr2L_9_1200001 chr2L_1200001 RAL-491 21 chr2L 1220127 1220157 chr2L 1227593 1227623 blood 13 7465 4.0 1.5 2.8 3.4 7496 chr2L 1220127 intron CG42329 + chr2L 1223875 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_13_1220001 chr2L_1220001 RAL-491 22 chr2L 1271005 1271042 chr2L 1271110 1271145 14 103 2.0 3.0 2.5 4.0 140 chr2L 1271005 intron robo3 + chr2L 1271075 intron robo3 + chr2L 1271145 intron robo3 + chr2L_14_1270001 chr2L_1270001 RAL-491 23 chr2L 1287293 1287315 chr2L 1287369 1287391 7 74 3.5 2.0 2.8 1.8 98 chr2L 1287293 intron robo3 + chr2L 1287342 intron robo3 + chr2L 1287391 intron robo3 + chr2L_7_1285001 chr2L_1285001 RAL-491 24 chr2L 1443271 1443289 chr2L 1443347 1443350 5 73 3.5 4.0 3.8 1.0 79 chr2L 1443271 exon CG43402 + chr2L 1443310 3` UTR CG43402 + chr2L 1443350 3` UTR CG43402 + chr2L_5_1440001 chr2L_1440001 RAL-491 25 chr2L 1570684 1570718 chr2L 1573556 1573590 F-element 8 2872 2.0 1.5 1.8 2.9 2906 chr2L 1570684 intron haf + chr2L 1572137 intron haf + chr2L 1573590 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-491 26 chr2L 1677385 1677404 chr2L 1677456 1677476 8 77 1.5 4.0 2.8 2.1 91 chr2L 1677385 intron chinmo + chr2L 1677430 intron chinmo + chr2L 1677476 intron chinmo + chr2L_8_1675001 chr2L_1675001 RAL-491 27 chr2L 1678977 1679007 chr2L 1686442 1686471 blood 4 7465 0.5 4.5 2.5 1.1 7494 chr2L 1678977 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686471 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-491 28 chr2L 1693153 1693186 chr2L 1693278 1693288 8 120 5.5 2.0 3.8 1.7 135 chr2L 1693153 intron chinmo + chr2L 1693220 intron chinmo + chr2L 1693288 intron chinmo + chr2L_8_1690001 chr2L_1690001 RAL-491 29 chr2L 1711354 1711384 chr2L 1711678 1711707 mdg3 6 318 6.5 5.0 5.8 0.9 353 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711530 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-491 30 chr2L 1721828 1721848 chr2L 1721912 1721914 6 78 0.0 0.5 0.2 5.0 86 chr2L 1721828 intron Rim2 - chr2L 1721871 intron Rim2 - chr2L 1721914 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-491 31 chr2L 1925489 1925500 chr2L 1925566 1925577 6 76 3.0 0.5 1.8 2.1 88 chr2L 1925489 intron CG7337 + chr2L 1925533 intron CG7337 + chr2L 1925577 intron CG7337 + chr2L_6_1925001 chr2L_1925001 RAL-491 32 chr2L 1993199 1993230 chr2L 1993285 1993300 4 82 4.5 2.0 3.2 1.0 101 chr2L 1993199 intergenic not near genes chr2L 1993250 intergenic not near genes chr2L 1993300 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-491 33 chr2L 2100378 2100391 chr2L 2109524 2109542 roo 7 9150 9.0 2.0 5.5 1.1 9164 chr2L 2100378 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109542 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-491 34 chr2L 2125153 2125177 chr2L 2125632 2125659 6 480 0.5 10.5 5.5 0.9 506 chr2L 2125153 intergenic not near genes chr2L 2125406 intergenic not near genes chr2L 2125659 intergenic not near genes chr2L_6_2125001 chr2L_2125001 RAL-491 35 chr2L 2125513 2125541 chr2L 2125855 2125885 6 346 2.5 29.0 15.8 0.4 372 chr2L 2125513 intergenic not near genes chr2L 2125699 intergenic not near genes chr2L 2125885 intergenic not near genes chr2L_6_2125001 chr2L_2125001 RAL-491 36 chr2L 2145753 2145783 chr2L 2145839 2145864 13 84 5.0 3.5 4.2 2.5 111 chr2L 2145753 3` UTR CG11723 - chr2L 2145808 3` UTR CG11723 - chr2L 2145864 3` UTR CG11723 - chr2L_13_2145001 chr2L_2145001 RAL-491 37 chr2L 2260126 2260147 chr2L 2260219 2260242 8 93 2.0 5.0 3.5 1.8 116 chr2L 2260126 intergenic CR44788 - chr2L 2260184 intergenic CR44788 - chr2L 2260242 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-491 38 chr2L 2304784 2304815 chr2L 2304865 2304896 4 75 3.5 3.0 3.2 1.0 112 chr2L 2304784 intergenic not near genes chr2L 2304840 intergenic not near genes chr2L 2304896 intergenic not near genes chr2L_4_2300001 chr2L_2300001 RAL-491 39 chr2L 2472584 2472595 chr2L 2472762 2472772 4 176 3.0 4.0 3.5 0.9 188 chr2L 2472584 3` UTR CR45286 - chr2L 2472678 3` UTR CR45286 - chr2L 2472772 3` UTR CR45286 - chr2L_4_2470001 chr2L_2470001 RAL-491 40 chr2L 2472596 2472607 chr2L 2472761 2472783 5 175 1.0 4.0 2.5 1.4 187 chr2L 2472596 3` UTR CR45286 - chr2L 2472690 3` UTR CR45286 - chr2L 2472783 3` UTR CR45286 - chr2L_5_2470001 chr2L_2470001 RAL-491 41 chr2L 2543485 2543512 chr2L 2543587 2543620 7 104 3.5 3.0 3.2 1.7 135 chr2L 2543485 intergenic not near genes chr2L 2543552 intergenic not near genes chr2L 2543620 intergenic not near genes chr2L_7_2540001 chr2L_2540001 RAL-491 42 chr2L 2557834 2557847 chr2L 2557918 2557932 6 84 0.0 6.0 3.0 1.5 98 chr2L 2557834 intergenic not near genes chr2L 2557883 intergenic not near genes chr2L 2557932 intergenic not near genes chr2L_6_2555001 chr2L_2555001 RAL-491 43 chr2L 2565558 2565565 chr2L 2571609 2571633 297 4 6062 3.5 2.0 2.8 1.1 6075 chr2L 2565558 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571633 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-491 44 chr2L 2587814 2587844 chr2L 2587893 2587908 8 75 4.0 1.0 2.5 2.3 94 chr2L 2587814 intergenic not near genes chr2L 2587861 intergenic not near genes chr2L 2587908 intergenic not near genes chr2L_8_2585001 chr2L_2585001 RAL-491 45 chr2L 2613397 2613417 chr2L 2613472 2613502 5 79 0.5 2.0 1.2 2.3 105 chr2L 2613397 intergenic not near genes chr2L 2613450 intergenic not near genes chr2L 2613502 intergenic not near genes chr2L_5_2610001 chr2L_2610001 RAL-491 46 chr2L 2667624 2667654 chr2L 2667703 2667717 6 72 2.0 2.5 2.2 1.9 93 chr2L 2667624 intergenic not near genes chr2L 2667670 intergenic not near genes chr2L 2667717 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-491 47 chr2L 2698867 2698894 chr2L 2698953 2698981 5 86 2.0 0.0 1.0 2.5 114 chr2L 2698867 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_5_2695001 chr2L_2695001 RAL-491 48 chr2L 2706560 2706588 chr2L 2706642 2706671 10 82 3.0 0.0 1.5 4.0 111 chr2L 2706560 intron CG31690 + chr2L 2706616 intron CG31690 + chr2L 2706671 intron CG31690 + chr2L_10_2705001 chr2L_2705001 RAL-491 49 chr2L 2739670 2739702 chr2L 2739744 2739753 8 72 6.5 1.5 4.0 1.6 83 chr2L 2739670 3` UTR CG31689 + chr2L 2739712 3` UTR CG31689 + chr2L 2739753 3` UTR CG31689 + chr2L_8_2735001 chr2L_2735001 RAL-491 50 chr2L 2772610 2772623 chr2L 2779194 2779205 297 4 6584 1.5 1.5 1.5 1.6 6595 chr2L 2772610 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779205 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-491 51 chr2L 2826545 2826574 chr2L 2826630 2826643 4 82 0.5 4.0 2.2 1.2 98 chr2L 2826545 intron Duox - chr2L 2826594 intron Duox - chr2L 2826643 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-491 52 chr2L 2933309 2933331 chr2L 2935486 2935508 pogo 7 2176 5.0 5.0 5.0 1.2 2199 chr2L 2933309 intron lilli + chr2L 2934408 intron lilli + chr2L 2935508 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-491 53 chr2L 3049233 3049264 chr2L 3049319 3049348 5 86 1.5 2.0 1.8 1.8 115 chr2L 3049233 intron v(2)k05816 + chr2L 3049290 intron v(2)k05816 + chr2L 3049348 intron v(2)k05816 + chr2L_5_3045001 chr2L_3045001 RAL-491 54 chr2L 3073033 3073065 chr2L 3078236 3078256 copia 9 5201 1.0 3.5 2.2 2.8 5223 chr2L 3073033 intron toc - chr2L 3075644 intron toc - chr2L 3078256 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-491 55 chr2L 3147275 3147304 chr2L 3147352 3147362 10 73 3.5 3.5 3.5 2.2 87 chr2L 3147275 3` UTR Mad - chr2L 3147318 3` UTR Mad - chr2L 3147362 3` UTR Mad - chr2L_10_3145001 chr2L_3145001 RAL-491 56 chr2L 3192210 3192226 chr2L 3192319 3192337 5 109 2.5 2.0 2.2 1.6 127 chr2L 3192210 exon CG34393 - chr2L 3192274 intron CG34393 - chr2L 3192337 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-491 57 chr2L 3251495 3251527 chr2L 3259059 3259092 springer 6 7562 4.5 2.0 3.2 1.4 7597 chr2L 3251495 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-491 58 chr2L 3260710 3260720 chr2L 3260850 3260860 5 140 2.0 2.0 2.0 1.7 150 chr2L 3260710 intergenic CR45337 - chr2L 3260785 intergenic CR45337 - chr2L 3260860 intergenic CR45337 - chr2L_5_3260001 chr2L_3260001 RAL-491 59 chr2L 3291239 3291260 chr2L 3291319 3291339 7 79 1.0 4.0 2.5 2.0 100 chr2L 3291239 intergenic CG9664 - chr2L 3291289 3` UTR CG9664 - chr2L 3291339 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-491 60 chr2L 3440291 3440302 chr2L 3440369 3440372 6 76 0.0 1.5 0.8 3.3 81 chr2L 3440291 intergenic not near genes chr2L 3440332 intergenic not near genes chr2L 3440372 intergenic not near genes chr2L_6_3440001 chr2L_3440001 RAL-491 61 chr2L 3587053 3587074 chr2L 3587116 3587150 4 70 2.5 3.5 3.0 1.0 97 chr2L 3587053 intergenic not near genes chr2L 3587102 intergenic not near genes chr2L 3587150 intergenic not near genes chr2L_4_3585001 chr2L_3585001 RAL-491 62 chr2L 3601088 3601118 chr2L 3601173 3601198 7 82 5.5 0.0 2.8 1.8 110 chr2L 3601088 intergenic not near genes chr2L 3601143 intergenic not near genes chr2L 3601198 intergenic not near genes chr2L_7_3600001 chr2L_3600001 RAL-491 63 chr2L 3707567 3707591 chr2L 3707651 3707675 9 83 4.5 3.0 3.8 1.9 108 chr2L 3707567 exon cutlet - chr2L 3707621 intron cutlet - chr2L 3707675 intron cutlet - chr2L_9_3705001 chr2L_3705001 RAL-491 64 chr2L 3743801 3743836 chr2L 3744074 3744109 8 272 1.5 2.0 1.8 2.9 308 chr2L 3743801 intron CG10019 + chr2L 3743955 intron CG10019 + chr2L 3744109 intron CG10019 + chr2L_8_3740001 chr2L_3740001 RAL-491 65 chr2L 3879282 3879301 chr2L 3879500 3879519 6 216 2.5 1.0 1.8 2.1 237 chr2L 3879282 intron capu - chr2L 3879400 intron capu - chr2L 3879519 intron capu - chr2L_6_3875001 chr2L_3875001 RAL-491 66 chr2L 3879302 3879311 chr2L 3879498 3879526 4 210 1.0 1.0 1.0 2.0 224 chr2L 3879302 intron capu - chr2L 3879414 intron capu - chr2L 3879526 intron capu - chr2L_4_3875001 chr2L_3875001 RAL-491 67 chr2L 3891901 3891923 chr2L 3891978 3892008 6 82 2.5 2.5 2.5 1.7 107 chr2L 3891901 intron capu - chr2L 3891954 intron capu - chr2L 3892008 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-491 68 chr2L 4008325 4008336 chr2L 4009174 4009195 5 854 1.0 1.0 1.0 2.5 870 chr2L 4008325 intergenic CG43774 +,CG43773 + chr2L 4008760 exon CG43774 + chr2L 4009195 intergenic CG43774 + chr2L_5_4005001 chr2L_4005001 RAL-491 69 chr2L 4016453 4016466 chr2L 4017258 4017260 4 798 23.0 16.0 19.5 0.2 807 chr2L 4016453 intergenic not near genes chr2L 4016856 intergenic not near genes chr2L 4017260 intergenic not near genes chr2L_4_4015001 chr2L_4015001 RAL-491 70 chr2L 4066047 4066060 chr2L 4068871 4068884 Juan 4 2824 3.0 5.5 4.2 0.8 2837 chr2L 4066047 intron ed + chr2L 4067466 intron ed + chr2L 4068884 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-491 71 chr2L 4601705 4601735 chr2L 4609145 4609176 mdg1 9 7441 4.0 2.0 3.0 2.2 7471 chr2L 4601705 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-491 72 chr2L 4681308 4681316 chr2L 4681559 4681579 4 253 7.0 4.5 5.8 0.6 271 chr2L 4681308 intergenic not near genes chr2L 4681444 intergenic not near genes chr2L 4681579 intergenic not near genes chr2L_4_4680001 chr2L_4680001 RAL-491 73 chr2L 4792726 4792756 chr2L 4792830 4792852 6 102 3.0 2.0 2.5 1.7 126 chr2L 4792726 intron CG15630 - chr2L 4792789 intron CG15630 - chr2L 4792852 intron CG15630 - chr2L_6_4790001 chr2L_4790001 RAL-491 74 chr2L 4803880 4803914 chr2L 4803964 4803998 7 84 1.5 1.0 1.2 3.2 118 chr2L 4803880 intergenic not near genes chr2L 4803939 intergenic not near genes chr2L 4803998 intergenic not near genes chr2L_7_4800001 chr2L_4800001 RAL-491 75 chr2L 4914715 4914736 chr2L 4914786 4914815 7 73 3.0 1.5 2.2 2.2 100 chr2L 4914715 intron hoe1 - chr2L 4914765 intron hoe1 - chr2L 4914815 intron hoe1 - chr2L_7_4910001 chr2L_4910001 RAL-491 76 chr2L 4918174 4918185 chr2L 4923247 4923258 jockey 4 5073 2.5 1.0 1.8 1.4 5084 chr2L 4918174 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923258 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-491 77 chr2L 5040685 5040701 chr2L 5040780 5040797 4 96 2.0 2.0 2.0 1.3 112 chr2L 5040685 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040741 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040797 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_4_5040001 chr2L_5040001 RAL-491 78 chr2L 5092421 5092442 chr2L 5092508 5092529 4 87 1.5 4.5 3.0 1.0 108 chr2L 5092421 intron pgant5 - chr2L 5092475 intron pgant5 - chr2L 5092529 intron pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-491 79 chr2L 5259337 5259370 chr2L 5259440 5259473 10 99 0.0 2.5 1.2 4.5 136 chr2L 5259337 intron,5` UTR tkv -,CR44744 + chr2L 5259405 intron,5` UTR tkv -,CR44744 + chr2L 5259473 intron,5` UTR tkv -,CR44744 + chr2L_10_5255001 chr2L_5255001 RAL-491 80 chr2L 5342770 5342803 chr2L 5345150 5345183 Doc 7 2380 2.5 1.5 2.0 2.3 2413 chr2L 5342770 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345183 intergenic not near genes chr2L_7_5340001 chr2L_5340001 RAL-491 81 chr2L 5412189 5412224 chr2L 5412356 5412391 11 167 3.0 1.5 2.2 3.4 202 chr2L 5412189 intron H15 + chr2L 5412290 intron H15 + chr2L 5412391 intron H15 + chr2L_11_5410001 chr2L_5410001 RAL-491 82 chr2L 5593126 5593160 chr2L 5593232 5593252 13 102 0.5 1.0 0.8 7.2 126 chr2L 5593126 intergenic not near genes chr2L 5593189 intergenic not near genes chr2L 5593252 intergenic not near genes chr2L_13_5590001 chr2L_5590001 RAL-491 83 chr2L 5681998 5682017 chr2L 5682096 5682123 4 99 1.5 6.0 3.8 0.8 125 chr2L 5681998 intergenic not near genes chr2L 5682060 intergenic not near genes chr2L 5682123 intergenic not near genes chr2L_4_5680001 chr2L_5680001 RAL-491 84 chr2L 5827715 5827741 chr2L 5836716 5836749 roo 11 9004 2.5 1.5 2.0 3.7 9034 chr2L 5827715 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_11_5830001 chr2L_5830001 RAL-491 85 chr2L 5870477 5870507 chr2L 5870552 5870583 6 76 1.0 3.5 2.2 1.9 106 chr2L 5870477 intron rau - chr2L 5870530 intron rau - chr2L 5870583 intron rau - chr2L_6_5870001 chr2L_5870001 RAL-491 86 chr2L 6021630 6021647 chr2L 6021696 6021715 5 69 3.5 0.0 1.8 1.8 85 chr2L 6021630 exon CG13996 + chr2L 6021672 3` UTR CG13996 + chr2L 6021715 3` UTR CG13996 + chr2L_5_6020001 chr2L_6020001 RAL-491 87 chr2L 6026643 6026652 chr2L 6027205 6027224 4 570 6.5 3.5 5.0 0.7 581 chr2L 6026643 intron CG9109 - chr2L 6026934 intron CG9109 - chr2L 6027224 intron CG9109 - chr2L_4_6025001 chr2L_6025001 RAL-491 88 chr2L 6103234 6103251 chr2L 6103304 6103323 5 73 3.0 7.5 5.2 0.8 89 chr2L 6103234 intron stai + chr2L 6103278 intron stai + chr2L 6103323 intron stai + chr2L_5_6100001 chr2L_6100001 RAL-491 89 chr2L 6231661 6231692 chr2L 6231742 6231745 6 75 2.0 0.0 1.0 3.0 84 chr2L 6231661 intergenic CR44823 + chr2L 6231703 intergenic CR44823 + chr2L 6231745 intergenic CR44823 + chr2L_6_6230001 chr2L_6230001 RAL-491 90 chr2L 6300577 6300592 chr2L 6300662 6300678 7 86 2.5 8.5 5.5 1.1 101 chr2L 6300577 intron Ddr + chr2L 6300628 intron Ddr + chr2L 6300678 intron Ddr + chr2L_7_6300001 chr2L_6300001 RAL-491 91 chr2L 6426872 6426886 chr2L 6445118 6445146 roo 9 18256 2.0 7.5 4.8 1.6 18274 chr2L 6426872 3` UTR CG9527 - chr2L 6436009 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-491 92 chr2L 6600070 6600083 chr2L 6600176 6600206 8 112 1.0 2.5 1.8 2.9 136 chr2L 6600070 intron CG11319 - chr2L 6600138 intron CG11319 - chr2L 6600206 intron CG11319 - chr2L_8_6600001 chr2L_6600001 RAL-491 93 chr2L 6626888 6626907 chr2L 6626972 6626992 5 84 5.0 4.0 4.5 0.9 104 chr2L 6626888 intron Oatp26F - chr2L 6626940 intron Oatp26F - chr2L 6626992 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-491 94 chr2L 6640908 6640939 chr2L 6641003 6641034 12 93 5.0 5.5 5.2 1.9 126 chr2L 6640908 exon CG31635 - chr2L 6640971 intron CG31635 - chr2L 6641034 intron CG31635 - chr2L_12_6640001 chr2L_6640001 RAL-491 95 chr2L 7005243 7005248 chr2L 7005330 7005344 4 94 1.0 3.0 2.0 1.3 101 chr2L 7005243 intron uif - chr2L 7005294 intron uif - chr2L 7005344 intron uif - chr2L_4_7005001 chr2L_7005001 RAL-491 96 chr2L 7126849 7126869 chr2L 7126939 7126956 4 86 2.5 0.0 1.2 1.8 107 chr2L 7126849 intron Pvf3 - chr2L 7126902 intron Pvf3 - chr2L 7126956 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-491 97 chr2L 7218404 7218422 chr2L 7218479 7218488 7 76 3.5 1.5 2.5 2.0 84 chr2L 7218404 intron CG13784 - chr2L 7218446 intron CG13784 - chr2L 7218488 intron CG13784 - chr2L_7_7215001 chr2L_7215001 RAL-491 98 chr2L 7343325 7343359 chr2L 7350440 7350475 roo 9 7111 3.0 1.0 2.0 3.0 7150 chr2L 7343325 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-491 99 chr2L 7358293 7358321 chr2L 7358372 7358400 9 74 3.5 1.5 2.5 2.6 107 chr2L 7358293 intergenic not near genes chr2L 7358346 intergenic not near genes chr2L 7358400 intergenic not near genes chr2L_9_7355001 chr2L_7355001 RAL-491 100 chr2L 7502742 7502762 chr2L 7502812 7502826 7 71 3.0 0.5 1.8 2.5 84 chr2L 7502742 intron RapGAP1 - chr2L 7502784 intron RapGAP1 - chr2L 7502826 intron RapGAP1 - chr2L_7_7500001 chr2L_7500001 RAL-491 101 chr2L 7555225 7555234 chr2L 7555298 7555308 5 75 0.0 4.5 2.2 1.6 83 chr2L 7555225 intron RapGAP1 - chr2L 7555266 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-491 102 chr2L 7765835 7765862 chr2L 7765913 7765919 5 73 2.5 0.0 1.2 2.3 84 chr2L 7765835 3` UTR CG7196 + chr2L 7765877 3` UTR CG7196 + chr2L 7765919 intergenic CG7196 + chr2L_5_7765001 chr2L_7765001 RAL-491 103 chr2L 7861308 7861340 chr2L 7861412 7861420 8 98 2.5 1.0 1.8 2.9 112 chr2L 7861308 intergenic TwdlE - chr2L 7861364 intergenic not near genes chr2L 7861420 intergenic not near genes chr2L_8_7860001 chr2L_7860001 RAL-491 104 chr2L 7922745 7922776 chr2L 7922826 7922856 10 78 0.5 4.0 2.2 3.1 111 chr2L 7922745 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-491 105 chr2L 7959047 7959065 chr2L 7960458 7960476 pogo 7 1410 5.0 4.5 4.8 1.2 1429 chr2L 7959047 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960476 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-491 106 chr2L 7977097 7977109 chr2L 7984065 7984085 297 4 6970 2.0 4.5 3.2 1.0 6988 chr2L 7977097 intron Snoo - chr2L 7980591 intron Snoo - chr2L 7984085 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-491 107 chr2L 8013612 8013630 chr2L 8018816 8018833 copia 8 5203 8.0 0.0 4.0 1.6 5221 chr2L 8013612 intron Tg + chr2L 8016222 intron Tg + chr2L 8018833 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-491 108 chr2L 8044106 8044128 chr2L 8044185 8044199 7 74 2.5 3.5 3.0 1.8 93 chr2L 8044106 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044199 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-491 109 chr2L 8332749 8332754 chr2L 8332815 8332829 5 74 3.5 3.0 3.2 1.2 80 chr2L 8332749 3` UTR CG14275 + chr2L 8332789 3` UTR CG14275 + chr2L 8332829 3` UTR CG14275 + chr2L_5_8330001 chr2L_8330001 RAL-491 110 chr2L 8336935 8336961 chr2L 8337014 8337039 4 77 3.0 5.5 4.2 0.8 104 chr2L 8336935 intergenic not near genes chr2L 8336987 intergenic not near genes chr2L 8337039 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-491 111 chr2L 8452439 8452452 chr2L 8461594 8461623 roo 4 9167 2.0 1.0 1.5 1.6 9184 chr2L 8452439 intron fu12 - chr2L 8457031 intron fu12 - chr2L 8461623 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-491 112 chr2L 8503610 8503621 chr2L 8503693 8503704 4 82 0.5 5.5 3.0 1.0 94 chr2L 8503610 intron Dh31 - chr2L 8503657 intron Dh31 - chr2L 8503704 intron Dh31 - chr2L_4_8500001 chr2L_8500001 RAL-491 113 chr2L 8575897 8575913 chr2L 8576282 8576299 6 384 5.5 2.0 3.8 1.2 402 chr2L 8575897 intron Sema-1a + chr2L 8576098 intron Sema-1a + chr2L 8576299 intron Sema-1a + chr2L_6_8575001 chr2L_8575001 RAL-491 114 chr2L 8575914 8575925 chr2L 8576281 8576307 5 381 3.5 1.5 2.5 1.4 393 chr2L 8575914 intron Sema-1a + chr2L 8576110 intron Sema-1a + chr2L 8576307 intron Sema-1a + chr2L_5_8575001 chr2L_8575001 RAL-491 115 chr2L 8629001 8629257 chr2L 8629085 8629356 9 88 2.5 4.0 3.2 2.1 355 chr2L 8629001 intron Sema-1a + chr2L 8629178 intron Sema-1a + chr2L 8629356 intron Sema-1a + chr2L_9_8625001 chr2L_8625001 RAL-491 116 chr2L 8630076 8630100 chr2L 8630159 8630184 12 81 3.5 4.5 4.0 2.4 108 chr2L 8630076 intron Sema-1a + chr2L 8630130 intron Sema-1a + chr2L 8630184 intron Sema-1a + chr2L_12_8630001 chr2L_8630001 RAL-491 117 chr2L 8689701 8689725 chr2L 8689797 8689822 6 95 4.5 4.0 4.2 1.2 121 chr2L 8689701 intron Hnf4 - chr2L 8689762 intron Hnf4 - chr2L 8689822 exon Hnf4 - chr2L_6_8685001 chr2L_8685001 RAL-491 118 chr2L 8698327 8698358 chr2L 8698466 8698497 5 139 3.0 0.0 1.5 2.0 170 chr2L 8698327 intron Hnf4 - chr2L 8698412 intron Hnf4 - chr2L 8698497 intron Hnf4 - chr2L_5_8695001 chr2L_8695001 RAL-491 119 chr2L 8717242 8717275 chr2L 8717523 8717555 14 279 2.0 3.0 2.5 4.0 313 chr2L 8717242 intron raw - chr2L 8717398 intron raw - chr2L 8717555 intron raw - chr2L_14_8715001 chr2L_8715001 RAL-491 120 chr2L 8723131 8723148 chr2L 8731495 8731525 Tirant 8 8374 1.0 3.5 2.2 2.5 8394 chr2L 8723131 intron raw - chr2L 8727328 intron raw - chr2L 8731525 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-491 121 chr2L 8799799 8799828 chr2L 8799915 8799927 4 112 2.5 2.0 2.2 1.2 128 chr2L 8799799 intergenic not near genes chr2L 8799863 intergenic not near genes chr2L 8799927 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-491 122 chr2L 8803185 8803187 chr2L 8803273 8803276 4 88 2.0 3.5 2.8 1.1 91 chr2L 8803185 intergenic not near genes chr2L 8803230 intergenic not near genes chr2L 8803276 intergenic not near genes chr2L_4_8800001 chr2L_8800001 RAL-491 123 chr2L 8820942 8820955 chr2L 8821017 8821034 6 78 2.0 4.5 3.2 1.4 92 chr2L 8820942 intergenic not near genes chr2L 8820988 intergenic not near genes chr2L 8821034 intergenic not near genes chr2L_6_8820001 chr2L_8820001 RAL-491 124 chr2L 8900052 8900067 chr2L 8900136 8900151 4 84 1.0 0.5 0.8 2.2 99 chr2L 8900052 intron CG34398 + chr2L 8900102 intron CG34398 + chr2L 8900151 intron CG34398 + chr2L_4_8900001 chr2L_8900001 RAL-491 125 chr2L 9000282 9000309 chr2L 9007792 9007819 roo 12 7509 4.0 7.0 5.5 1.8 7537 chr2L 9000282 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_12_9000001 chr2L_9000001 RAL-491 126 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133321 13.5 21.5 17.5 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-491 127 chr2L 9217980 9218000 chr2L 9222753 9222774 Doc 7 4779 2.0 2.5 2.2 2.2 4794 chr2L 9217980 intron tai + chr2L 9220377 intron tai + chr2L 9222774 intron tai + chr2L_7_9220001 chr2L_9220001 RAL-491 128 chr2L 9251147 9251173 chr2L 9251244 9251270 6 94 4.5 3.5 4.0 1.2 123 chr2L 9251147 intergenic aust -,borr - chr2L 9251208 intergenic aust -,borr - chr2L 9251270 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-491 129 chr2L 9264344 9264371 chr2L 9264442 9264471 4 100 5.5 2.5 4.0 0.8 127 chr2L 9264344 intron Ggamma30A + chr2L 9264408 intron Ggamma30A + chr2L 9264471 intron Ggamma30A + chr2L_4_9260001 chr2L_9260001 RAL-491 130 chr2L 9280012 9280021 chr2L 9280104 9280115 4 94 1.0 6.5 3.8 0.8 103 chr2L 9280012 intron Ggamma30A + chr2L 9280064 intron Ggamma30A + chr2L 9280115 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-491 131 chr2L 9297381 9297393 chr2L 9297455 9297457 5 72 4.0 3.0 3.5 1.1 76 chr2L 9297381 3` UTR Ggamma30A + chr2L 9297419 3` UTR Ggamma30A + chr2L 9297457 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-491 132 chr2L 9385117 9385149 chr2L 9385207 9385239 9 90 2.0 2.5 2.2 2.8 122 chr2L 9385117 intron Shawl - chr2L 9385178 intron Shawl - chr2L 9385239 intron Shawl - chr2L_9_9385001 chr2L_9385001 RAL-491 133 chr2L 9393509 9393525 chr2L 9396470 9396492 jockey 6 2965 5.0 3.5 4.2 1.2 2983 chr2L 9393509 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396492 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-491 134 chr2L 9421017 9421026 chr2L 9421161 9421170 4 143 0.0 5.5 2.8 1.1 153 chr2L 9421017 intron Mco1 + chr2L 9421094 intron Mco1 + chr2L 9421170 intron Mco1 + chr2L_4_9420001 chr2L_9420001 RAL-491 135 chr2L 9454976 9455003 chr2L 9455078 9455105 9 100 1.5 1.0 1.2 4.1 129 chr2L 9454976 intron numb + chr2L 9455040 intron numb + chr2L 9455105 intron numb + chr2L_9_9455001 chr2L_9455001 RAL-491 136 chr2L 9457086 9457104 chr2L 9457163 9457181 6 76 3.0 3.0 3.0 1.5 95 chr2L 9457086 intron numb + chr2L 9457134 intron numb + chr2L 9457181 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-491 137 chr2L 9490543 9490551 chr2L 9490612 9490631 5 78 2.0 5.5 3.8 1.0 88 chr2L 9490543 intergenic not near genes chr2L 9490587 intergenic not near genes chr2L 9490631 intergenic not near genes chr2L_5_9490001 chr2L_9490001 RAL-491 138 chr2L 9543770 9543788 chr2L 9543847 9543865 6 76 1.0 1.0 1.0 3.0 95 chr2L 9543770 intergenic Cpr30B +,CG13113 + chr2L 9543818 intergenic Cpr30B +,CG13113 + chr2L 9543865 intergenic Cpr30B +,CG13113 + chr2L_6_9540001 chr2L_9540001 RAL-491 139 chr2L 9679472 9679489 chr2L 9679552 9679569 4 79 1.0 0.0 0.5 2.7 97 chr2L 9679472 intergenic not near genes chr2L 9679520 intergenic not near genes chr2L 9679569 intergenic not near genes chr2L_4_9675001 chr2L_9675001 RAL-491 140 chr2L 9826674 9826704 chr2L 9826755 9826770 7 80 7.0 6.0 6.5 0.9 96 chr2L 9826674 intron nAChRalpha6 - chr2L 9826722 intron nAChRalpha6 - chr2L 9826770 intron nAChRalpha6 - chr2L_7_9825001 chr2L_9825001 RAL-491 141 chr2L 9837432 9837441 chr2L 9837510 9837512 4 76 2.0 0.0 1.0 2.0 80 chr2L 9837432 intron nAChRalpha6 - chr2L 9837472 intron nAChRalpha6 - chr2L 9837512 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-491 142 chr2L 9973739 9973755 chr2L 9980847 9980873 HMS-Beagle 4 7116 5.5 8.5 7.0 0.5 7134 chr2L 9973739 intergenic not near genes chr2L 9977306 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-491 143 chr2L 9986350 9986384 chr2L 9986445 9986474 5 94 1.5 5.0 3.2 1.2 124 chr2L 9986350 intron bib + chr2L 9986412 intron bib + chr2L 9986474 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-491 144 chr2L 10018950 10018977 chr2L 10019036 10019064 13 84 2.5 2.5 2.5 3.7 114 chr2L 10018950 intergenic not near genes chr2L 10019007 intergenic not near genes chr2L 10019064 intergenic not near genes chr2L_13_10015001 chr2L_10015001 RAL-491 145 chr2L 10051742 10051753 chr2L 10051811 10051830 11 75 1.5 4.0 2.8 2.9 88 chr2L 10051742 5` UTR CR44874 + chr2L 10051786 5` UTR CR44874 + chr2L 10051830 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 RAL-491 146 chr2L 10075683 10075710 chr2L 10075759 10075770 8 72 0.5 1.0 0.8 4.4 87 chr2L 10075683 intron CG44153 - chr2L 10075726 intron CG44153 - chr2L 10075770 intron CG44153 - chr2L_8_10075001 chr2L_10075001 RAL-491 147 chr2L 10100364 10100389 chr2L 10100447 10100450 5 77 5.0 2.5 3.8 1.0 86 chr2L 10100364 intron CG44153 - chr2L 10100407 intron CG44153 - chr2L 10100450 intron CG44153 - chr2L_5_10100001 chr2L_10100001 RAL-491 148 chr2L 10156340 10156355 chr2L 10163790 10163824 blood 7 7464 2.5 1.0 1.8 2.5 7484 chr2L 10156340 intron,3` UTR CG44153 -,CG4839 + chr2L 10160082 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-491 149 chr2L 10232935 10232944 chr2L 10233013 10233022 4 78 1.5 2.0 1.8 1.4 87 chr2L 10232935 intron eEF1delta + chr2L 10232978 intron eEF1delta + chr2L 10233022 intron eEF1delta + chr2L_4_10230001 chr2L_10230001 RAL-491 150 chr2L 10480316 10480330 chr2L 10480394 10480408 6 76 2.5 0.0 1.2 2.7 92 chr2L 10480316 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480408 intron RluA-2 + chr2L_6_10480001 chr2L_10480001 RAL-491 151 chr2L 10580686 10580717 chr2L 10580761 10580793 9 73 1.0 0.5 0.8 5.0 107 chr2L 10580686 intron Trim9 + chr2L 10580740 intron Trim9 + chr2L 10580793 intron Trim9 + chr2L_9_10580001 chr2L_10580001 RAL-491 152 chr2L 10586509 10586526 chr2L 10586591 10586608 7 81 5.0 2.0 3.5 1.6 99 chr2L 10586509 intron Trim9 + chr2L 10586558 intron Trim9 + chr2L 10586608 intron Trim9 + chr2L_7_10585001 chr2L_10585001 RAL-491 153 chr2L 10592853 10592873 chr2L 10600510 10600513 opus 5 7653 1.0 3.5 2.2 1.6 7660 chr2L 10592853 intron Trim9 + chr2L 10596683 intron Trim9 + chr2L 10600513 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-491 154 chr2L 10631209 10631238 chr2L 10631341 10631362 10 131 2.5 0.0 1.2 4.5 153 chr2L 10631209 intron CG7329 - chr2L 10631286 intron CG7329 - chr2L 10631362 intron CG7329 - chr2L_10_10630001 chr2L_10630001 RAL-491 155 chr2L 10721880 10721901 chr2L 10721956 10721976 5 75 0.5 0.5 0.5 3.3 96 chr2L 10721880 intergenic not near genes chr2L 10721928 intergenic not near genes chr2L 10721976 intergenic not near genes chr2L_5_10720001 chr2L_10720001 RAL-491 156 chr2L 10760228 10760259 chr2L 10760697 10760729 8 468 0.0 4.0 2.0 2.7 501 chr2L 10760228 intergenic not near genes chr2L 10760478 intergenic not near genes chr2L 10760729 intergenic CG6495 + chr2L_8_10760001 chr2L_10760001 RAL-491 157 chr2L 10808263 10808280 chr2L 10808349 10808366 5 84 1.0 3.0 2.0 1.7 103 chr2L 10808263 intron Nos - chr2L 10808314 intron Nos - chr2L 10808366 intron Nos - chr2L_5_10805001 chr2L_10805001 RAL-491 158 chr2L 10862870 10862873 chr2L 10864454 10864483 Rt1c 6 1602 3.5 5.0 4.2 1.2 1613 chr2L 10862870 3` UTR CR43807 - chr2L 10863676 intron CR43807 - chr2L 10864483 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-491 159 chr2L 10946951 10946965 chr2L 10956163 10956180 roo 7 9214 2.0 4.0 3.0 1.8 9229 chr2L 10946951 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956180 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-491 160 chr2L 10946966 10946976 chr2L 10956159 10956191 roo 6 9211 1.5 3.5 2.5 1.7 9225 chr2L 10946966 intron dpr2 - chr2L 10951578 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-491 161 chr2L 11130495 11130512 chr2L 11130583 11130602 6 89 3.0 0.5 1.8 2.1 107 chr2L 11130495 5` UTR RfC38 - chr2L 11130548 5` UTR RfC38 - chr2L 11130602 5` UTR RfC38 - chr2L_6_11130001 chr2L_11130001 RAL-491 162 chr2L 11224060 11224089 chr2L 11224166 11224200 6 109 1.0 1.0 1.0 3.0 140 chr2L 11224060 intron ab + chr2L 11224130 intron ab + chr2L 11224200 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-491 163 chr2L 11313115 11313127 chr2L 11313193 11313206 4 76 6.5 3.5 5.0 0.7 91 chr2L 11313115 intergenic not near genes chr2L 11313160 intergenic not near genes chr2L 11313206 intergenic not near genes chr2L_4_11310001 chr2L_11310001 RAL-491 164 chr2L 11380614 11380644 chr2L 11380690 11380721 8 77 0.5 1.5 1.0 4.0 107 chr2L 11380614 intergenic not near genes chr2L 11380668 intergenic not near genes chr2L 11380721 intergenic not near genes chr2L_8_11380001 chr2L_11380001 RAL-491 165 chr2L 11413295 11413319 chr2L 11413419 11413439 5 123 3.5 3.0 3.2 1.2 144 chr2L 11413295 intergenic not near genes chr2L 11413367 intergenic not near genes chr2L 11413439 intergenic not near genes chr2L_5_11410001 chr2L_11410001 RAL-491 166 chr2L 11418662 11418688 chr2L 11418741 11418767 7 79 0.5 3.0 1.8 2.5 105 chr2L 11418662 intergenic not near genes chr2L 11418714 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-491 167 chr2L 11540584 11540614 chr2L 11547986 11548016 Tabor 12 7400 2.0 3.5 2.8 3.2 7432 chr2L 11540584 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_12_11540001 chr2L_11540001 RAL-491 168 chr2L 11563634 11563667 chr2L 11568838 11568869 copia 5 5201 1.0 2.5 1.8 1.8 5235 chr2L 11563634 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568869 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-491 169 chr2L 11591435 11591460 chr2L 11591513 11591547 6 81 2.0 1.5 1.8 2.1 112 chr2L 11591435 intron,3` UTR kek2 +,Acp33A - chr2L 11591491 intron,3` UTR kek2 +,Acp33A - chr2L 11591547 intron,exon kek2 +,Acp33A - chr2L_6_11590001 chr2L_11590001 RAL-491 170 chr2L 11614076 11614084 chr2L 11615549 11615569 hopper2 7 1482 2.5 7.5 5.0 1.2 1493 chr2L 11614076 intron kek2 + chr2L 11614822 intron kek2 + chr2L 11615569 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-491 171 chr2L 11618573 11618575 chr2L 11618657 11618660 4 88 1.0 5.0 3.0 1.0 87 chr2L 11618573 intron kek2 + chr2L 11618616 intron kek2 + chr2L 11618660 intron kek2 + chr2L_4_11615001 chr2L_11615001 RAL-491 172 chr2L 11674697 11674725 chr2L 11675050 11675078 10 353 1.5 3.5 2.5 2.9 381 chr2L 11674697 intergenic not near genes chr2L 11674888 intergenic not near genes chr2L 11675078 intergenic not near genes chr2L_10_11670001 chr2L_11670001 RAL-491 173 chr2L 11702614 11702638 chr2L 11702698 11702723 6 85 0.0 3.5 1.8 2.1 109 chr2L 11702614 intergenic not near genes chr2L 11702668 intergenic not near genes chr2L 11702723 intergenic not near genes chr2L_6_11700001 chr2L_11700001 RAL-491 174 chr2L 11706657 11706681 chr2L 11706739 11706764 5 82 1.5 5.0 3.2 1.2 107 chr2L 11706657 intergenic not near genes chr2L 11706710 intergenic not near genes chr2L 11706764 intergenic not near genes chr2L_5_11705001 chr2L_11705001 RAL-491 175 chr2L 11854671 11854697 chr2L 11854837 11854851 8 164 2.0 1.0 1.5 3.2 180 chr2L 11854671 intron Pde1c - chr2L 11854761 intron Pde1c - chr2L 11854851 intron Pde1c - chr2L_8_11850001 chr2L_11850001 RAL-491 176 chr2L 11890472 11890494 chr2L 11890554 11890569 8 80 5.5 1.0 3.2 1.9 97 chr2L 11890472 intron Pde1c - chr2L 11890520 intron Pde1c - chr2L 11890569 intron Pde1c - chr2L_8_11890001 chr2L_11890001 RAL-491 177 chr2L 11890877 11890893 chr2L 11890947 11890968 4 68 2.0 4.0 3.0 1.0 91 chr2L 11890877 intron Pde1c - chr2L 11890922 intron Pde1c - chr2L 11890968 intron Pde1c - chr2L_4_11890001 chr2L_11890001 RAL-491 178 chr2L 12031385 12031419 chr2L 12031466 12031499 6 81 1.5 1.0 1.2 2.7 114 chr2L 12031385 intron dmGlut + chr2L 12031442 intron dmGlut + chr2L 12031499 intron dmGlut + chr2L_6_12030001 chr2L_12030001 RAL-491 179 chr2L 12153160 12153172 chr2L 12153484 12153496 4 322 4.0 3.0 3.5 0.9 336 chr2L 12153160 intron CG31760 + chr2L 12153328 intron CG31760 + chr2L 12153496 intron CG31760 + chr2L_4_12150001 chr2L_12150001 RAL-491 180 chr2L 12234031 12234067 chr2L 12234126 12234162 7 93 2.0 2.0 2.0 2.3 131 chr2L 12234031 intron aret + chr2L 12234096 intron aret + chr2L 12234162 intron aret + chr2L_7_12230001 chr2L_12230001 RAL-491 181 chr2L 12272165 12272195 chr2L 12272241 12272250 7 73 1.5 1.0 1.2 3.2 85 chr2L 12272165 intron aret + chr2L 12272208 intron aret + chr2L 12272250 intron aret + chr2L_7_12270001 chr2L_12270001 RAL-491 182 chr2L 12322470 12322495 chr2L 12322620 12322646 4 146 2.0 3.0 2.5 1.1 176 chr2L 12322470 intergenic not near genes chr2L 12322558 intergenic not near genes chr2L 12322646 intergenic not near genes chr2L_4_12320001 chr2L_12320001 RAL-491 183 chr2L 12481379 12481400 chr2L 12481461 12481482 6 80 2.5 1.0 1.8 2.1 103 chr2L 12481379 intron bun - chr2L 12481430 intron bun - chr2L 12481482 intron bun - chr2L_6_12480001 chr2L_12480001 RAL-491 184 chr2L 12487892 12487913 chr2L 12487966 12487980 6 75 3.0 2.5 2.8 1.6 88 chr2L 12487892 intron bun - chr2L 12487936 intron bun - chr2L 12487980 intron bun - chr2L_6_12485001 chr2L_12485001 RAL-491 185 chr2L 12529248 12529446 chr2L 12529375 12529522 13 84 1.5 1.5 1.5 5.2 274 chr2L 12529248 intron bun - chr2L 12529385 intron bun - chr2L 12529522 intron bun - chr2L_13_12525001 chr2L_12525001 RAL-491 186 chr2L 12558318 12558349 chr2L 12565447 12565476 HMS-Beagle 5 7128 1.0 1.0 1.0 2.5 7158 chr2L 12558318 intergenic not near genes chr2L 12561897 intergenic not near genes chr2L 12565476 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-491 187 chr2L 12647712 12647737 chr2L 12647794 12647810 7 75 0.5 4.5 2.5 2.0 98 chr2L 12647712 intergenic not near genes chr2L 12647761 intergenic not near genes chr2L 12647810 intergenic not near genes chr2L_7_12645001 chr2L_12645001 RAL-491 188 chr2L 12693838 12693871 chr2L 12693915 12693946 12 76 2.0 0.0 1.0 6.0 108 chr2L 12693838 exon CG6153 + chr2L 12693892 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693946 3` UTR CG5780 - chr2L_12_12690001 chr2L_12690001 RAL-491 189 chr2L 12731057 12731092 chr2L 12735823 12735859 F-element 8 4766 1.0 2.0 1.5 3.2 4802 chr2L 12731057 intron MRP + chr2L 12733458 intron MRP + chr2L 12735859 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-491 190 chr2L 12736669 12736706 chr2L 12736745 12736752 7 66 1.0 3.0 2.0 2.3 83 chr2L 12736669 intron MRP + chr2L 12736710 intron MRP + chr2L 12736752 intron MRP + chr2L_7_12735001 chr2L_12735001 RAL-491 191 chr2L 12739178 12739200 chr2L 12743959 12743981 Doc 9 4779 3.0 6.0 4.5 1.6 4803 chr2L 12739178 exon MRP + chr2L 12741580 intron MRP + chr2L 12743981 exon MRP + chr2L_9_12740001 chr2L_12740001 RAL-491 192 chr2L 12751309 12751340 chr2L 12751392 12751411 12 80 2.0 1.5 1.8 4.3 102 chr2L 12751309 intergenic not near genes chr2L 12751360 intergenic not near genes chr2L 12751411 intergenic not near genes chr2L_12_12750001 chr2L_12750001 RAL-491 193 chr2L 12781800 12781809 chr2L 12789250 12789258 Quasimodo 4 7450 6.5 3.5 5.0 0.7 7458 chr2L 12781800 intergenic not near genes chr2L 12785529 intergenic not near genes chr2L 12789258 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-491 194 chr2L 12791605 12791627 chr2L 12795276 12795302 F-element 7 3672 4.5 1.0 2.8 1.8 3697 chr2L 12791605 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795302 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-491 195 chr2L 12835563 12835583 chr2L 12835672 12835692 6 108 1.0 0.5 0.8 3.3 129 chr2L 12835563 intergenic not near genes chr2L 12835628 intergenic not near genes chr2L 12835692 intergenic not near genes chr2L_6_12835001 chr2L_12835001 RAL-491 196 chr2L 12848447 12848464 chr2L 12848530 12848545 7 85 0.0 5.0 2.5 2.0 98 chr2L 12848447 intergenic not near genes chr2L 12848496 intergenic not near genes chr2L 12848545 intergenic not near genes chr2L_7_12845001 chr2L_12845001 RAL-491 197 chr2L 12861695 12861728 chr2L 12863162 12863180 hobo 17 1464 1.0 2.0 1.5 6.8 1485 chr2L 12861695 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_17_12860001 chr2L_12860001 RAL-491 198 chr2L 12933854 12933876 chr2L 12941317 12941339 blood 5 7465 5.0 2.0 3.5 1.1 7485 chr2L 12933854 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941339 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-491 199 chr2L 13047952 13047980 chr2L 13048076 13048105 9 123 0.5 2.5 1.5 3.6 153 chr2L 13047952 intron CG9932 - chr2L 13048028 intron CG9932 - chr2L 13048105 intron CG9932 - chr2L_9_13045001 chr2L_13045001 RAL-491 200 chr2L 13231882 13231914 chr2L 13231992 13232023 9 110 5.5 2.0 3.8 1.9 141 chr2L 13231882 intergenic Prosalpha6T + chr2L 13231952 intergenic Prosalpha6T + chr2L 13232023 intergenic Prosalpha6T + chr2L_9_13230001 chr2L_13230001 RAL-491 201 chr2L 13241960 13241978 chr2L 13244344 13244353 BS 6 2380 2.0 2.0 2.0 2.0 2393 chr2L 13241960 5` UTR CR45330 + chr2L 13243156 intron CR45330 + chr2L 13244353 5` UTR CR45330 + chr2L_6_13240001 chr2L_13240001 RAL-491 202 chr2L 13266386 13266410 chr2L 13266466 13266496 8 86 1.5 4.5 3.0 2.0 110 chr2L 13266386 intron CG44085 + chr2L 13266441 intron CG44085 + chr2L 13266496 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-491 203 chr2L 13405647 13405681 chr2L 13410444 13410478 Doc 13 4796 3.0 5.0 4.0 2.6 4831 chr2L 13405647 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410478 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-491 204 chr2L 13449463 13449489 chr2L 13456899 13456925 Quasimodo 4 7435 2.5 1.0 1.8 1.4 7462 chr2L 13449463 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456925 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-491 205 chr2L 13481455 13481479 chr2L 13482062 13482078 jockey 11 603 5.5 3.5 4.5 2.0 623 chr2L 13481455 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_11_13480001 chr2L_13480001 RAL-491 206 chr2L 13499391 13499398 chr2L 13504949 13504972 5 5564 24.5 21.5 23.0 0.2 5581 chr2L 13499391 3` UTR CG42784 + chr2L 13502182 3` UTR B4 - chr2L 13504972 exon B4 - chr2L_5_13500001 chr2L_13500001 RAL-491 207 chr2L 13560409 13560415 chr2L 13565230 13565236 F-element 4 4820 4.0 1.5 2.8 1.1 4827 chr2L 13560409 intron kuz + chr2L 13562822 intron kuz + chr2L 13565236 intron kuz + chr2L_4_13560001 chr2L_13560001 RAL-491 208 chr2L 13622144 13622162 chr2L 13622238 13622261 5 95 3.0 1.5 2.2 1.6 117 chr2L 13622144 intron kuz + chr2L 13622202 intron kuz + chr2L 13622261 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-491 209 chr2L 13622164 13622168 chr2L 13622237 13622259 4 78 3.0 1.5 2.2 1.2 95 chr2L 13622164 intron kuz + chr2L 13622212 intron kuz + chr2L 13622259 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-491 210 chr2L 13684273 13684284 chr2L 13684347 13684360 6 76 0.0 4.5 2.2 1.9 87 chr2L 13684273 intron CG31814 - chr2L 13684316 intron CG31814 - chr2L 13684360 intron CG31814 - chr2L_6_13680001 chr2L_13680001 RAL-491 211 chr2L 13761815 13761824 chr2L 13762926 13762935 Doc 4 1111 5.0 5.5 5.2 0.6 1120 chr2L 13761815 intron TM9SF4 + chr2L 13762375 intron TM9SF4 + chr2L 13762935 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-491 212 chr2L 13853091 13853118 chr2L 13862241 13862267 roo 6 9147 4.5 2.5 3.5 1.3 9176 chr2L 13853091 intron CenG1A + chr2L 13857679 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-491 213 chr2L 13904218 13904241 chr2L 13904311 13904333 8 90 3.5 6.0 4.8 1.4 115 chr2L 13904218 5` UTR Smg5 - chr2L 13904276 5` UTR Smg5 - chr2L 13904333 5` UTR Smg5 - chr2L_8_13900001 chr2L_13900001 RAL-491 214 chr2L 13913590 13913605 chr2L 13913703 13913718 5 113 3.5 5.5 4.5 0.9 128 chr2L 13913590 intergenic not near genes chr2L 13913654 intergenic not near genes chr2L 13913718 intergenic not near genes chr2L_5_13910001 chr2L_13910001 RAL-491 215 chr2L 13918811 13918837 chr2L 13918898 13918924 10 86 2.0 0.0 1.0 5.0 113 chr2L 13918811 intron Ance-3 + chr2L 13918868 intron Ance-3 + chr2L 13918924 intron Ance-3 + chr2L_10_13915001 chr2L_13915001 RAL-491 216 chr2L 13988280 13988303 chr2L 13988367 13988390 5 85 0.0 2.0 1.0 2.5 110 chr2L 13988280 intron rk - chr2L 13988335 intron rk - chr2L 13988390 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-491 217 chr2L 14137581 14137613 chr2L 14137659 14137669 6 74 2.5 4.0 3.2 1.4 88 chr2L 14137581 intron CG17341 + chr2L 14137625 intron CG17341 + chr2L 14137669 intron CG17341 + chr2L_6_14135001 chr2L_14135001 RAL-491 218 chr2L 14160687 14160703 chr2L 14160772 14160775 5 82 2.5 1.5 2.0 1.7 88 chr2L 14160687 intergenic CG17341 +,CG43332 - chr2L 14160731 intergenic CG17341 +,CG43332 - chr2L 14160775 intergenic CG17341 +,CG43332 - chr2L_5_14160001 chr2L_14160001 RAL-491 219 chr2L 14222309 14222327 chr2L 14222396 14222407 6 86 2.0 5.0 3.5 1.3 98 chr2L 14222309 intron Dyrk2 - chr2L 14222358 intron Dyrk2 - chr2L 14222407 intron Dyrk2 - chr2L_6_14220001 chr2L_14220001 RAL-491 220 chr2L 14374783 14374802 chr2L 14374874 14374893 6 90 0.0 1.0 0.5 4.0 110 chr2L 14374783 intergenic not near genes chr2L 14374838 intergenic not near genes chr2L 14374893 intergenic not near genes chr2L_6_14370001 chr2L_14370001 RAL-491 221 chr2L 14494093 14494124 chr2L 14494456 14494487 9 362 3.0 3.5 3.2 2.1 394 chr2L 14494093 intergenic noc + chr2L 14494290 intergenic noc + chr2L 14494487 intergenic noc + chr2L_9_14490001 chr2L_14490001 RAL-491 222 chr2L 14512773 14512804 chr2L 14512856 14512878 6 74 1.5 3.0 2.2 1.9 105 chr2L 14512773 intergenic not near genes chr2L 14512826 intergenic not near genes chr2L 14512878 intergenic not near genes chr2L_6_14510001 chr2L_14510001 RAL-491 223 chr2L 14657021 14657044 chr2L 14657100 14657111 8 75 7.0 1.5 4.2 1.5 90 chr2L 14657021 intron osp - chr2L 14657066 intron osp - chr2L 14657111 intron osp - chr2L_8_14655001 chr2L_14655001 RAL-491 224 chr2L 14658697 14658718 chr2L 14658777 14658798 4 80 1.0 3.5 2.2 1.2 101 chr2L 14658697 intron osp - chr2L 14658748 intron osp - chr2L 14658798 intron osp - chr2L_4_14655001 chr2L_14655001 RAL-491 225 chr2L 14694254 14694275 chr2L 14694378 14694399 4 124 1.5 1.0 1.2 1.8 145 chr2L 14694254 intergenic not near genes chr2L 14694326 intergenic not near genes chr2L 14694399 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-491 226 chr2L 14781562 14781582 chr2L 14781662 14781683 4 100 3.0 2.5 2.8 1.1 121 chr2L 14781562 intergenic not near genes chr2L 14781622 intergenic not near genes chr2L 14781683 intergenic not near genes chr2L_4_14780001 chr2L_14780001 RAL-491 227 chr2L 14803887 14803910 chr2L 14809087 14809113 copia 5 5198 3.5 3.0 3.2 1.2 5226 chr2L 14803887 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-491 228 chr2L 14840989 14841008 chr2L 14841076 14841095 5 86 1.5 4.0 2.8 1.3 106 chr2L 14840989 3` UTR CR43805 - chr2L 14841042 3` UTR CR43805 - chr2L 14841095 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-491 229 chr2L 14842419 14842442 chr2L 14842491 14842526 9 82 2.0 1.0 1.5 3.6 107 chr2L 14842419 exon CG42682 + chr2L 14842472 intron CG42682 + chr2L 14842526 intron CG42682 + chr2L_9_14840001 chr2L_14840001 RAL-491 230 chr2L 14889959 14889988 chr2L 14890377 14890412 jockey 6 422 4.0 3.5 3.8 1.2 453 chr2L 14889959 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-491 231 chr2L 14941612 14941629 chr2L 14941752 14941769 5 139 4.0 3.0 3.5 1.1 157 chr2L 14941612 exon CG42313 - chr2L 14941690 intron CG42313 - chr2L 14941769 intron CG42313 - chr2L_5_14940001 chr2L_14940001 RAL-491 232 chr2L 14975613 14975638 chr2L 14975713 14975738 5 96 2.5 1.5 2.0 1.7 125 chr2L 14975613 intergenic mol - chr2L 14975676 intergenic mol - chr2L 14975738 intergenic mol - chr2L_5_14975001 chr2L_14975001 RAL-491 233 chr2L 14982256 14982286 chr2L 14982353 14982383 4 96 0.0 1.5 0.8 2.2 127 chr2L 14982256 intron mol - chr2L 14982320 intron mol - chr2L 14982383 intron mol - chr2L_4_14980001 chr2L_14980001 RAL-491 234 chr2L 14984387 14984405 chr2L 14991988 14992007 opus 6 7602 2.0 1.0 1.5 2.4 7620 chr2L 14984387 intron mol - chr2L 14988197 intron mol - chr2L 14992007 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-491 235 chr2L 15003544 15003565 chr2L 15003628 15003644 5 83 3.5 2.0 2.8 1.3 100 chr2L 15003544 intergenic not near genes chr2L 15003594 intergenic not near genes chr2L 15003644 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-491 236 chr2L 15021446 15021471 chr2L 15021521 15021547 9 73 2.5 2.5 2.5 2.6 101 chr2L 15021446 intron GABA-B-R1 + chr2L 15021496 intron GABA-B-R1 + chr2L 15021547 intron GABA-B-R1 + chr2L_9_15020001 chr2L_15020001 RAL-491 237 chr2L 15044711 15044741 chr2L 15044787 15044817 5 75 1.0 1.0 1.0 2.5 106 chr2L 15044711 intergenic ck - chr2L 15044764 intergenic ck - chr2L 15044817 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-491 238 chr2L 15078074 15078092 chr2L 15078162 15078180 4 86 2.0 1.5 1.8 1.4 106 chr2L 15078074 intron CG15270 + chr2L 15078127 intron CG15270 + chr2L 15078180 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-491 239 chr2L 15161249 15161274 chr2L 15161385 15161396 4 132 1.0 2.5 1.8 1.4 147 chr2L 15161249 intergenic CR44770 + chr2L 15161322 intergenic CR44770 + chr2L 15161396 intergenic CR44770 +,CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-491 240 chr2L 15341793 15341812 chr2L 15341919 15341937 5 125 3.0 4.0 3.5 1.1 144 chr2L 15341793 intergenic not near genes chr2L 15341865 intergenic not near genes chr2L 15341937 intergenic not near genes chr2L_5_15340001 chr2L_15340001 RAL-491 241 chr2L 15343540 15343566 chr2L 15343625 15343651 10 82 1.0 0.0 0.5 6.7 111 chr2L 15343540 intergenic not near genes chr2L 15343596 intergenic not near genes chr2L 15343651 intergenic not near genes chr2L_10_15340001 chr2L_15340001 RAL-491 242 chr2L 15446052 15446080 chr2L 15453520 15453548 blood 13 7469 1.5 1.5 1.5 5.2 7496 chr2L 15446052 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453548 intergenic not near genes chr2L_13_15445001 chr2L_15445001 RAL-491 243 chr2L 15514319 15514327 chr2L 15514401 15514411 4 83 4.5 7.5 6.0 0.6 92 chr2L 15514319 intergenic not near genes chr2L 15514365 intergenic not near genes chr2L 15514411 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-491 244 chr2L 15535884 15535916 chr2L 15535974 15536003 18 87 4.0 2.5 3.2 4.3 119 chr2L 15535884 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536003 intergenic not near genes chr2L_18_15535001 chr2L_15535001 RAL-491 245 chr2L 15540929 15540959 chr2L 15541075 15541106 4 146 0.0 3.5 1.8 1.4 177 chr2L 15540929 intergenic not near genes chr2L 15541018 intergenic not near genes chr2L 15541106 intergenic not near genes chr2L_4_15540001 chr2L_15540001 RAL-491 246 chr2L 15586412 15586432 chr2L 15593464 15593484 297 4 7052 4.5 1.0 2.8 1.1 7072 chr2L 15586412 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593484 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-491 247 chr2L 15636680 15636690 chr2L 15636756 15636766 4 75 1.0 0.0 0.5 2.7 86 chr2L 15636680 intergenic not near genes chr2L 15636723 intergenic not near genes chr2L 15636766 intergenic not near genes chr2L_4_15635001 chr2L_15635001 RAL-491 248 chr2L 15915651 15915680 chr2L 15915728 15915757 6 77 4.0 2.5 3.2 1.4 106 chr2L 15915651 intron beat-Ib - chr2L 15915704 intron beat-Ib - chr2L 15915757 intron beat-Ib - chr2L_6_15915001 chr2L_15915001 RAL-491 249 chr2L 16001474 16001493 chr2L 16001562 16001580 5 84 0.5 2.5 1.5 2.0 106 chr2L 16001474 intron beat-Ic + chr2L 16001527 intron beat-Ic + chr2L 16001580 intron beat-Ic + chr2L_5_16000001 chr2L_16000001 RAL-491 250 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 11.0 21.5 16.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-491 251 chr2L 16091637 16091657 chr2L 16091710 16091742 10 81 3.5 0.0 1.8 3.6 105 chr2L 16091637 intergenic not near genes chr2L 16091690 intergenic not near genes chr2L 16091742 intergenic not near genes chr2L_10_16090001 chr2L_16090001 RAL-491 252 chr2L 16141174 16141186 chr2L 16146375 16146393 copia 5 5203 0.5 2.5 1.5 2.0 5219 chr2L 16141174 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-491 253 chr2L 16153735 16153757 chr2L 16160788 16160811 297 5 7053 1.5 3.0 2.2 1.6 7076 chr2L 16153735 intergenic not near genes chr2L 16157273 intergenic not near genes chr2L 16160811 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-491 254 chr2L 9084336 9084340 chr2L 16217660 16217660 16 7133321 13.5 21.5 17.5 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_16_12650001 chr2L_12650001 RAL-491 255 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405059 19.0 9.5 14.2 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-491 256 chr2L 16280257 16280278 chr2L 16281425 16281432 1360 6 1165 3.0 4.0 3.5 1.3 1175 chr2L 16280257 intron crp - chr2L 16280844 intron crp - chr2L 16281432 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-491 257 chr2L 16363948 16363973 chr2L 16364187 16364219 8 243 0.0 0.0 0.0 8.0 271 chr2L 16363948 intergenic not near genes chr2L 16364084 intergenic not near genes chr2L 16364219 intergenic not near genes chr2L_8_16360001 chr2L_16360001 RAL-491 258 chr2L 16764969 16764999 chr2L 16765049 16765079 7 79 2.0 0.5 1.2 3.2 110 chr2L 16764969 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765079 intergenic not near genes chr2L_7_16765001 chr2L_16765001 RAL-491 259 chr2L 16818832 16818860 chr2L 16818908 16818936 12 75 0.5 0.0 0.2 10.0 104 chr2L 16818832 intron,intron CG13280 -,mdy + chr2L 16818884 intron,intron CG13280 -,mdy + chr2L 16818936 intron,intron CG13280 -,mdy + chr2L_12_16815001 chr2L_16815001 RAL-491 260 chr2L 16958108 16958138 chr2L 16962896 16962910 Doc 6 4784 3.0 2.5 2.8 1.6 4802 chr2L 16958108 intergenic not near genes chr2L 16960509 intergenic not near genes chr2L 16962910 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-491 261 chr2L 17000125 17000153 chr2L 17000240 17000275 7 119 0.5 3.0 1.8 2.5 150 chr2L 17000125 intergenic not near genes chr2L 17000200 intergenic not near genes chr2L 17000275 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-491 262 chr2L 17199169 17199194 chr2L 17200636 17200658 hobo 5 1466 1.5 0.0 0.8 2.8 1489 chr2L 17199169 intron beat-IIIc - chr2L 17199914 intron beat-IIIc - chr2L 17200658 intron beat-IIIc - chr2L_5_17195001 chr2L_17195001 RAL-491 263 chr2L 17273188 17273228 chr2L 17277971 17277995 F-element 10 4779 3.5 0.5 2.0 3.3 4807 chr2L 17273188 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277995 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-491 264 chr2L 17327915 17327925 chr2L 17327999 17328009 5 85 5.5 5.0 5.2 0.8 94 chr2L 17327915 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328009 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-491 265 chr2L 17375800 17375810 chr2L 17375915 17375925 4 115 4.5 4.0 4.2 0.8 125 chr2L 17375800 intron Lrch - chr2L 17375862 intron Lrch - chr2L 17375925 intron Lrch - chr2L_4_17375001 chr2L_17375001 RAL-491 266 chr2L 17432020 17432047 chr2L 17432127 17432154 1360 5 107 0.0 1.0 0.5 3.3 134 chr2L 17432020 intron Dif - chr2L 17432087 intron Dif - chr2L 17432154 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-491 267 chr2L 17637097 17637122 chr2L 17637174 17637184 4 73 5.0 0.5 2.8 1.1 87 chr2L 17637097 intergenic not near genes chr2L 17637140 intergenic not near genes chr2L 17637184 intergenic not near genes chr2L_4_17635001 chr2L_17635001 RAL-491 268 chr2L 17796028 17796042 chr2L 17796109 17796123 6 81 2.5 2.0 2.2 1.9 95 chr2L 17796028 intron CadN2 - chr2L 17796076 intron CadN2 - chr2L 17796123 intron CadN2 - chr2L_6_17795001 chr2L_17795001 RAL-491 269 chr2L 17819927 17819956 chr2L 17825130 17825159 copia 4 5202 0.5 1.5 1.0 2.0 5232 chr2L 17819927 intron CadN2 - chr2L 17822543 intron CadN2 - chr2L 17825159 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-491 270 chr2L 17911960 17911984 chr2L 17914138 17914162 pogo 8 2175 2.5 4.0 3.2 1.9 2202 chr2L 17911960 intergenic not near genes chr2L 17913061 intergenic not near genes chr2L 17914162 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 RAL-491 271 chr2L 17941851 17941871 chr2L 17941935 17941942 5 79 1.0 4.0 2.5 1.4 91 chr2L 17941851 intergenic not near genes chr2L 17941896 intergenic not near genes chr2L 17941942 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-491 272 chr2L 17943890 17944139 chr2L 17943993 17944217 11 94 5.5 0.5 3.0 2.8 327 chr2L 17943890 intergenic not near genes chr2L 17944054 intergenic not near genes chr2L 17944217 intergenic not near genes chr2L_11_17940001 chr2L_17940001 RAL-491 273 chr2L 17951949 17951980 chr2L 17953416 17953442 hobo 9 1466 1.0 1.0 1.0 4.5 1493 chr2L 17951949 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953442 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-491 274 chr2L 18051887 18051907 chr2L 18061034 18061051 roo 6 9146 2.0 4.0 3.0 1.5 9164 chr2L 18051887 intron rdo + chr2L 18056469 intron rdo + chr2L 18061051 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-491 275 chr2L 18090676 18090683 chr2L 18090763 18090765 7 87 5.5 6.5 6.0 1.0 89 chr2L 18090676 intergenic CG15153 - chr2L 18090720 intergenic CG15153 - chr2L 18090765 3` UTR CG15153 - chr2L_7_18090001 chr2L_18090001 RAL-491 276 chr2L 18090684 18090706 chr2L 18090760 18090791 9 79 2.0 5.5 3.8 1.9 107 chr2L 18090684 intergenic CG15153 - chr2L 18090738 3` UTR CG15153 - chr2L 18090791 3` UTR CG15153 - chr2L_9_18090001 chr2L_18090001 RAL-491 277 chr2L 18145246 18145263 chr2L 18145325 18145342 6 77 1.0 4.0 2.5 1.7 96 chr2L 18145246 intron,5` UTR Socs36E -,CR44478 + chr2L 18145294 intron,5` UTR Socs36E -,CR44478 + chr2L 18145342 intron,5` UTR Socs36E -,CR44478 + chr2L_6_18145001 chr2L_18145001 RAL-491 278 chr2L 18185005 18185019 chr2L 18185123 18185137 5 118 1.0 0.5 0.8 2.8 132 chr2L 18185005 intron,5` UTR CG42750 -,CG7180 - chr2L 18185071 intron CG42750 - chr2L 18185137 intron CG42750 - chr2L_5_18185001 chr2L_18185001 RAL-491 279 chr2L 18218622 18218636 chr2L 18218710 18218724 5 88 2.5 5.0 3.8 1.0 102 chr2L 18218622 intron CG42750 - chr2L 18218673 intron CG42750 - chr2L 18218724 intron CG42750 - chr2L_5_18215001 chr2L_18215001 RAL-491 280 chr2L 18239958 18239976 chr2L 18240040 18240051 6 80 3.0 0.0 1.5 2.4 93 chr2L 18239958 intron CG42750 - chr2L 18240004 intron CG42750 - chr2L 18240051 intron CG42750 - chr2L_6_18240001 chr2L_18240001 RAL-491 281 chr2L 18306767 18306796 chr2L 18307124 18307140 7 351 5.0 2.5 3.8 1.5 373 chr2L 18306767 intergenic not near genes chr2L 18306954 intergenic not near genes chr2L 18307140 intergenic not near genes chr2L_7_18305001 chr2L_18305001 RAL-491 282 chr2L 18334613 18334644 chr2L 18334698 18334729 14 84 2.0 2.5 2.2 4.4 116 chr2L 18334613 intron Fas3 + chr2L 18334671 intron Fas3 + chr2L 18334729 intron Fas3 + chr2L_14_18330001 chr2L_18330001 RAL-491 283 chr2L 18408028 18408056 chr2L 18412808 18412827 Doc 10 4781 3.0 0.0 1.5 4.0 4799 chr2L 18408028 intergenic not near genes chr2L 18410428 intergenic not near genes chr2L 18412827 intergenic not near genes chr2L_10_18410001 chr2L_18410001 RAL-491 284 chr2L 18628080 18628108 chr2L 18628281 18628309 4 197 2.0 2.0 2.0 1.3 229 chr2L 18628080 intron MESR3 + chr2L 18628194 intron MESR3 + chr2L 18628309 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-491 285 chr2L 18812557 18812584 chr2L 18812819 18812836 8 260 1.5 2.0 1.8 2.9 279 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812696 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812836 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-491 286 chr2L 18847925 18847928 chr2L 18848335 18848339 4 411 0.0 5.5 2.8 1.1 414 chr2L 18847925 intron CG17321 + chr2L 18848132 intron CG17321 + chr2L 18848339 intron CG17321 + chr2L_4_18845001 chr2L_18845001 RAL-491 287 chr2L 18898397 18898427 chr2L 18898479 18898502 7 80 3.5 2.5 3.0 1.8 105 chr2L 18898397 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898502 intergenic not near genes chr2L_7_18895001 chr2L_18895001 RAL-491 288 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744195 6.5 22.0 14.2 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-491 289 chr2L 19070276 19070299 chr2L 19070367 19070367 8 87 3.0 2.0 2.5 2.3 91 chr2L 19070276 intergenic CG10702 - chr2L 19070322 intergenic CG10702 - chr2L 19070367 intergenic not near genes chr2L_8_19070001 chr2L_19070001 RAL-491 290 chr2L 19075060 19075074 chr2L 19075356 19075370 4 296 4.5 4.0 4.2 0.8 310 chr2L 19075060 intergenic not near genes chr2L 19075215 intergenic not near genes chr2L 19075370 intergenic not near genes chr2L_4_19075001 chr2L_19075001 RAL-491 291 chr2L 19163382 19163393 chr2L 19163463 19163471 5 78 4.5 5.0 4.8 0.9 89 chr2L 19163382 intron brat + chr2L 19163426 intron brat + chr2L 19163471 intron brat + chr2L_5_19160001 chr2L_19160001 RAL-491 292 chr2L 19199671 19199707 chr2L 19199745 19199774 11 66 2.0 1.0 1.5 4.4 103 chr2L 19199671 intron drl + chr2L 19199722 intron drl + chr2L 19199774 intron drl + chr2L_11_19195001 chr2L_19195001 RAL-491 293 chr2L 19209615 19209648 chr2L 19209700 19209732 6 85 1.0 3.5 2.2 1.9 117 chr2L 19209615 intergenic not near genes chr2L 19209674 intergenic not near genes chr2L 19209732 intergenic not near genes chr2L_6_19205001 chr2L_19205001 RAL-491 294 chr2L 19220104 19220134 chr2L 19220224 19220254 6 115 9.5 3.0 6.2 0.8 150 chr2L 19220104 intergenic not near genes chr2L 19220179 intergenic not near genes chr2L 19220254 intergenic not near genes chr2L_6_19220001 chr2L_19220001 RAL-491 295 chr2L 19268781 19268792 chr2L 19268875 19268896 4 102 10.0 4.5 7.2 0.5 115 chr2L 19268781 intergenic CR44190 - chr2L 19268838 intergenic CR44190 - chr2L 19268896 intergenic CR44190 - chr2L_4_19265001 chr2L_19265001 RAL-491 296 chr2L 19309634 19309653 chr2L 19309698 19309733 8 76 4.0 2.0 3.0 2.0 99 chr2L 19309634 intergenic not near genes chr2L 19309684 intergenic not near genes chr2L 19309733 intergenic not near genes chr2L_8_19305001 chr2L_19305001 RAL-491 297 chr2L 19345011 19345039 chr2L 19357220 19357247 blood 10 12207 1.0 1.0 1.0 5.0 12236 chr2L 19345011 intron dnt - chr2L 19351129 intron dnt - chr2L 19357247 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-491 298 chr2L 19357547 19357564 chr2L 19357635 19357653 7 89 7.0 4.0 5.5 1.1 106 chr2L 19357547 intron dnt - chr2L 19357600 intron dnt - chr2L 19357653 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-491 299 chr2L 19405357 19405365 chr2L 19405486 19405494 4 129 3.5 2.0 2.8 1.1 137 chr2L 19405357 intron Pax - chr2L 19405426 intron Pax - chr2L 19405494 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-491 300 chr2L 19541642 19541663 chr2L 19541715 19541748 5 83 1.5 1.0 1.2 2.3 106 chr2L 19541642 intergenic CG13081 + chr2L 19541695 intergenic CG13081 + chr2L 19541748 intergenic CG13081 + chr2L_5_19540001 chr2L_19540001 RAL-491 301 chr2L 19544616 19544629 chr2L 19544661 19544661 4 50 4.0 4.5 4.2 0.8 45 chr2L 19544616 exon ref(2)P + chr2L 19544638 exon ref(2)P + chr2L 19544661 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-491 302 chr2L 19620101 19620130 chr2L 19621083 19621105 jockey 6 980 3.0 2.5 2.8 1.6 1004 chr2L 19620101 intron Lar + chr2L 19620603 intron Lar + chr2L 19621105 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-491 303 chr2L 19638536 19638566 chr2L 19638624 19638652 14 87 3.5 1.5 2.5 4.0 116 chr2L 19638536 intron Lar + chr2L 19638594 intron Lar + chr2L 19638652 intron Lar + chr2L_14_19635001 chr2L_19635001 RAL-491 304 chr2L 19652570 19652600 chr2L 19674005 19674036 opus 10 21434 2.0 1.0 1.5 4.0 21466 chr2L 19652570 intron Lar + chr2L 19663303 intron Lar + chr2L 19674036 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-491 305 chr2L 19703538 19703570 chr2L 19712674 19712698 roo 7 9132 2.0 2.5 2.2 2.2 9160 chr2L 19703538 intron Lar + chr2L 19708118 intron Lar + chr2L 19712698 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-491 306 chr2L 19730860 19730882 chr2L 19730939 19730961 10 76 2.0 3.0 2.5 2.9 101 chr2L 19730860 3` UTR Lar + chr2L 19730910 3` UTR Lar + chr2L 19730961 3` UTR Lar + chr2L_10_19730001 chr2L_19730001 RAL-491 307 chr2L 19762823 19762837 chr2L 19763065 19763079 pogo 4 242 3.5 4.0 3.8 0.8 256 chr2L 19762823 intron fbp - chr2L 19762951 intron fbp - chr2L 19763079 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-491 308 chr2L 19837277 19837294 chr2L 19837357 19837358 9 77 8.0 1.5 4.8 1.6 81 chr2L 19837277 intron sick + chr2L 19837318 intron sick + chr2L 19837358 intron sick + chr2L_9_19835001 chr2L_19835001 RAL-491 309 chr2L 19902331 19902367 chr2L 19902457 19902473 6 120 4.0 3.5 3.8 1.2 142 chr2L 19902331 intron sick + chr2L 19902402 intron sick + chr2L 19902473 intron sick + chr2L_6_19900001 chr2L_19900001 RAL-491 310 chr2L 20022092 20022124 chr2L 20022205 20022236 4 112 1.0 2.0 1.5 1.6 144 chr2L 20022092 intergenic not near genes chr2L 20022164 intergenic not near genes chr2L 20022236 intergenic not near genes chr2L_4_20020001 chr2L_20020001 RAL-491 311 chr2L 20036537 20036559 chr2L 20036617 20036642 5 83 1.0 0.5 0.8 2.8 105 chr2L 20036537 intron sNPF + chr2L 20036590 intron sNPF + chr2L 20036642 intron sNPF + chr2L_5_20035001 chr2L_20035001 RAL-491 312 chr2L 20226260 20226284 chr2L 20226342 20226366 14 79 2.0 3.5 2.8 3.7 106 chr2L 20226260 intergenic not near genes chr2L 20226313 intergenic not near genes chr2L 20226366 intergenic not near genes chr2L_14_20225001 chr2L_20225001 RAL-491 313 chr2L 20272120 20272145 chr2L 20282825 20282844 copia 7 10705 2.5 5.5 4.0 1.4 10724 chr2L 20272120 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282844 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-491 314 chr2L 20296517 20296535 chr2L 20296590 20296614 5 78 1.0 1.0 1.0 2.5 97 chr2L 20296517 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296614 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-491 315 chr2L 20303161 20303189 chr2L 20310629 20310657 blood 9 7465 0.0 3.0 1.5 3.6 7496 chr2L 20303161 intergenic not near genes chr2L 20306909 intergenic not near genes chr2L 20310657 intergenic not near genes chr2L_9_20305001 chr2L_20305001 RAL-491 316 chr2L 20310881 20310917 chr2L 20310960 20310995 9 76 0.5 6.0 3.2 2.1 114 chr2L 20310881 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310995 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-491 317 chr2L 20315701 20315734 chr2L 20315794 20315827 15 90 3.0 2.0 2.5 4.3 126 chr2L 20315701 intron spir + chr2L 20315764 intron spir + chr2L 20315827 intron spir + chr2L_15_20315001 chr2L_20315001 RAL-491 318 chr2L 20372229 20372246 chr2L 20372470 20372487 pogo 7 240 0.5 1.5 1.0 3.5 258 chr2L 20372229 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372487 exon Ugt37a1 - chr2L_7_20370001 chr2L_20370001 RAL-491 319 chr2L 20493760 20493781 chr2L 20493845 20493866 4 85 6.0 0.5 3.2 1.0 106 chr2L 20493760 intergenic not near genes chr2L 20493813 intergenic not near genes chr2L 20493866 intergenic not near genes chr2L_4_20490001 chr2L_20490001 RAL-491 320 chr2L 20498696 20498706 chr2L 20498790 20498793 4 95 3.0 4.5 3.8 0.8 97 chr2L 20498696 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498793 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-491 321 chr2L 20568666 20568679 chr2L 20569056 20569068 X-element 4 389 4.5 3.0 3.8 0.8 402 chr2L 20568666 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569068 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-491 322 chr2L 20576230 20576252 chr2L 20583690 20583719 blood 7 7464 2.5 3.0 2.8 1.8 7489 chr2L 20576230 intergenic not near genes chr2L 20579974 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-491 323 chr2L 20818513 20818538 chr2L 20818594 20818599 6 77 2.5 2.0 2.2 1.9 86 chr2L 20818513 exon CheB38a - chr2L 20818556 intergenic CheB38a - chr2L 20818599 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-491 324 chr2L 20835809 20835832 chr2L 20836524 20836549 Quasimodo 7 716 2.0 5.0 3.5 1.6 740 chr2L 20835809 5` UTR Oseg5 - chr2L 20836179 intergenic Oseg5 -,Spn38F - chr2L 20836549 intergenic Spn38F - chr2L_7_20835001 chr2L_20835001 RAL-491 325 chr2L 20911028 20911059 chr2L 20911104 20911129 15 74 5.0 8.0 6.5 2.0 101 chr2L 20911028 intron,intron CG43739 -,sky - chr2L 20911078 intron,intron CG43739 -,sky - chr2L 20911129 intron,intron CG43739 -,sky - chr2L_15_20910001 chr2L_20910001 RAL-491 326 chr2L 20968314 20968343 chr2L 20968475 20968505 10 161 4.0 1.5 2.8 2.6 191 chr2L 20968314 intron CG42238 - chr2L 20968410 intron CG42238 - chr2L 20968505 intron CG42238 - chr2L_10_20965001 chr2L_20965001 RAL-491 327 chr2L 20976643 20976680 chr2L 20981458 20981486 X-element 10 4813 2.0 2.0 2.0 3.3 4843 chr2L 20976643 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981486 intron CG42238 - chr2L_10_20975001 chr2L_20975001 RAL-491 328 chr2L 20984741 20984770 chr2L 20984833 20984862 9 84 1.0 4.0 2.5 2.6 121 chr2L 20984741 intron CG42238 - chr2L 20984802 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-491 329 chr2L 21020289 21020311 chr2L 21023952 21023984 NOF 11 3673 3.5 3.5 3.5 2.4 3695 chr2L 21020289 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-491 330 chr2L 21144204 21144228 chr2L 21145829 21145846 5 1617 30.0 34.5 32.2 0.2 1642 chr2L 21144204 exon CG9253 + chr2L 21145025 exon CG9253 + chr2L 21145846 exon del - chr2L_5_21145001 chr2L_21145001 RAL-491 331 chr2L 21286605 21286635 chr2L 21286682 21286713 9 76 1.0 2.5 1.8 3.2 108 chr2L 21286605 exon Mio - chr2L 21286659 intron Mio - chr2L 21286713 intron Mio - chr2L_9_21285001 chr2L_21285001 RAL-491 332 chr2L 21597048 21597058 chr2L 21604773 21604802 roo 5 7738 3.5 0.5 2.0 1.7 7754 chr2L 21597048 intergenic not near genes chr2L 21600925 intergenic not near genes chr2L 21604802 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-491 333 chr2L 21754661 21754686 chr2L 21754742 21754765 8 81 0.5 2.5 1.5 3.2 104 chr2L 21754661 intron step - chr2L 21754713 intron step - chr2L 21754765 intron step - chr2L_8_21750001 chr2L_21750001 RAL-491 334 chr2L 21771987 21772013 chr2L 21772066 21772092 6 75 1.5 2.5 2.0 2.0 105 chr2L 21771987 intron CG31612 - chr2L 21772040 intron CG31612 - chr2L 21772092 intron CG31612 - chr2L_6_21770001 chr2L_21770001 RAL-491 335 chr2L 21806223 21806254 chr2L 21806326 21806336 7 100 4.0 1.5 2.8 1.8 113 chr2L 21806223 intergenic not near genes chr2L 21806280 intergenic not near genes chr2L 21806336 intergenic not near genes chr2L_7_21805001 chr2L_21805001 RAL-491 336 chr2L 21809012 21809042 chr2L 21809218 21809245 4 205 3.5 1.0 2.2 1.2 233 chr2L 21809012 intergenic not near genes chr2L 21809128 intergenic not near genes chr2L 21809245 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-491 337 chr2L 21825155 21825180 chr2L 21825589 21825613 9 433 1.5 4.5 3.0 2.2 458 chr2L 21825155 intergenic not near genes chr2L 21825384 intergenic not near genes chr2L 21825613 intergenic not near genes chr2L_9_21825001 chr2L_21825001 RAL-491 338 chr2L 21859323 21859350 chr2L 21859403 21859405 6 72 4.0 2.0 3.0 1.5 82 chr2L 21859323 intron CR44917 + chr2L 21859364 intron CR44917 + chr2L 21859405 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-491 339 chr2L 21953262 21953279 chr2L 21953584 21953615 6 333 2.0 2.0 2.0 2.0 353 chr2L 21953262 intergenic not near genes chr2L 21953438 intergenic not near genes chr2L 21953615 intergenic not near genes chr2L_6_21950001 chr2L_21950001 RAL-491 340 chr2L 21953794 21953823 chr2L 21954695 21954724 10 902 28.5 29.0 28.8 0.3 930 chr2L 21953794 intergenic not near genes chr2L 21954259 intergenic not near genes chr2L 21954724 intergenic not near genes chr2L_10_21950001 chr2L_21950001 RAL-491 341 chr2L 21981680 21981713 chr2L 21990845 21990863 roo 15 9160 5.0 4.0 4.5 2.7 9183 chr2L 21981680 exon CG2528 - chr2L 21986272 intron CG2528 - chr2L 21990863 exon CG2528 - chr2L_15_21985001 chr2L_21985001 RAL-491 342 chr2L 22027281 22027289 chr2L 22027352 22027365 4 76 3.0 3.5 3.2 1.0 84 chr2L 22027281 intergenic not near genes chr2L 22027323 intergenic not near genes chr2L 22027365 intergenic not near genes chr2L_4_22025001 chr2L_22025001 RAL-491 343 chr2L 22558153 22558167 chr2L 22558211 22558239 6 72 1.5 1.0 1.2 2.7 86 chr2L 22558153 intergenic not near genes chr2L 22558196 intergenic not near genes chr2L 22558239 intergenic not near genes chr2L_6_22555001 chr2L_22555001 RAL-491 344 chr2L 22581992 22582002 chr2L 22583763 22583791 S-element 4 1784 2.0 1.0 1.5 1.6 1799 chr2L 22581992 intron CG17494 + chr2L 22582892 intron CG17494 + chr2L 22583791 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-491 345 chr2L 22719441 22719466 chr2L 22727564 22727582 gypsy2 7 8121 1.0 2.0 1.5 2.8 8141 chr2L 22719441 intron CG40006 - chr2L 22723512 intron CG40006 - chr2L 22727582 intron CG40006 - chr2L_7_22720001 chr2L_22720001 RAL-491 346 chr2L 22941254 22941277 chr2L 22941336 22941358 6 82 4.5 4.5 4.5 1.1 104 chr2L 22941254 3` UTR lt + chr2L 22941306 3` UTR lt + chr2L 22941358 3` UTR lt + chr2L_6_22940001 chr2L_22940001 RAL-491 347 chr2L 23006509 23006530 chr2L 23007183 23007206 Osvaldo 4 674 3.5 5.0 4.2 0.8 697 chr2L 23006509 intron Cht3 - chr2L 23006858 intron Cht3 - chr2L 23007206 intron Cht3 - chr2L_4_23005001 chr2L_23005001 RAL-491 348 chr2R 2498987 2499003 chr2R 2508134 2508149 roo 5 9147 7.0 3.0 5.0 0.8 9162 chr2R 2498987 intron MFS17 - chr2R 2503568 intron MFS17 - chr2R 2508149 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-491 349 chr2R 2591545 2591551 chr2R 2594221 2594226 roo 5 2675 23.0 11.0 17.0 0.3 2681 chr2R 2591545 intergenic not near genes chr2R 2592886 intergenic not near genes chr2R 2594226 intergenic not near genes chr2R_5_2590001 chr2R_2590001 RAL-491 350 chr2R 3144103 3144109 chr2R 3393381 3393386 Doc 4 249277 8.5 5.0 6.8 0.5 249283 chr2R 3144103 intron CG42596 + chr2R 3268744 intergenic not near genes chr2R 3393386 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-491 351 chr2R 4622957 4622983 chr2R 4624115 4624142 1360 5 1158 3.0 3.0 3.0 1.2 1185 chr2R 4622957 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624142 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-491 352 chr2R 4970250 4970279 chr2R 4970320 4970352 8 72 3.0 4.5 3.8 1.7 102 chr2R 4970250 intron Ir41a + chr2R 4970301 intron Ir41a + chr2R 4970352 intron Ir41a + chr2R_8_4970001 chr2R_4970001 RAL-491 353 chr2R 5075223 5075240 chr2R 5075351 5075352 5 123 4.5 0.0 2.2 1.6 129 chr2R 5075223 intergenic not near genes chr2R 5075288 intergenic not near genes chr2R 5075352 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-491 354 chr2R 5075353 5075372 chr2R 5075762 5075788 8 415 0.0 4.0 2.0 2.7 435 chr2R 5075353 intergenic not near genes chr2R 5075570 intergenic not near genes chr2R 5075788 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-491 355 chr2R 5080807 5080817 chr2R 5080881 5080908 7 84 1.5 4.5 3.0 1.8 101 chr2R 5080807 intergenic not near genes chr2R 5080858 intergenic not near genes chr2R 5080908 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-491 356 chr2R 5417998 5418024 chr2R 5420626 5420656 Burdock 5 2631 3.5 2.0 2.8 1.3 2658 chr2R 5417998 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420656 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-491 357 chr2R 5472375 5472391 chr2R 5472470 5472486 4 91 4.5 4.5 4.5 0.7 111 chr2R 5472375 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472486 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-491 358 chr2R 5476355 5476384 chr2R 5476896 5476923 11 542 2.5 3.5 3.0 2.8 568 chr2R 5476355 intron CG30440 - chr2R 5476639 intron CG30440 - chr2R 5476923 intron CG30440 - chr2R_11_5475001 chr2R_5475001 RAL-491 359 chr2R 5484867 5484889 chr2R 5484949 5484976 6 86 0.0 1.0 0.5 4.0 109 chr2R 5484867 intron CG30440 - chr2R 5484922 intron CG30440 - chr2R 5484976 intron CG30440 - chr2R_6_5480001 chr2R_5480001 RAL-491 360 chr2R 5581403 5581424 chr2R 5627604 5627633 4 46205 1.0 8.0 4.5 0.7 46230 chr2R 5581403 intergenic not near genes chr2R 5604518 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-491 361 chr2R 5640015 5640045 chr2R 5640092 5640109 9 68 5.0 2.5 3.8 1.9 94 chr2R 5640015 intergenic not near genes chr2R 5640062 intergenic not near genes chr2R 5640109 intergenic not near genes chr2R_9_5640001 chr2R_5640001 RAL-491 362 chr2R 5774285 5774304 chr2R 5774539 5774558 6 253 1.5 2.5 2.0 2.0 273 chr2R 5774285 3` UTR Gp210 + chr2R 5774422 intergenic Gp210 +,ZnT41F - chr2R 5774558 intergenic ZnT41F -,Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-491 363 chr2R 5794241 5794257 chr2R 5794359 5794385 4 126 4.5 2.0 3.2 1.0 144 chr2R 5794241 intergenic not near genes chr2R 5794313 intergenic not near genes chr2R 5794385 intergenic not near genes chr2R_4_5790001 chr2R_5790001 RAL-491 364 chr2R 5869275 5869300 chr2R 5874351 5874376 flea 7 5076 4.5 3.0 3.8 1.5 5101 chr2R 5869275 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874376 intergenic not near genes chr2R_7_5870001 chr2R_5870001 RAL-491 365 chr2R 5878926 5878956 chr2R 5879005 5879019 8 73 1.5 2.0 1.8 2.9 93 chr2R 5878926 intergenic CG44438 - chr2R 5878972 intergenic CG44438 - chr2R 5879019 intergenic CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-491 366 chr2R 6016783 6016820 chr2R 6016867 6016904 6 83 0.0 2.0 1.0 3.0 121 chr2R 6016783 intergenic not near genes chr2R 6016844 intergenic not near genes chr2R 6016904 intergenic not near genes chr2R_6_6015001 chr2R_6015001 RAL-491 367 chr2R 6050304 6050336 chr2R 6050397 6050404 7 85 4.5 0.0 2.2 2.2 100 chr2R 6050304 intergenic CG34212 - chr2R 6050354 intergenic CG34212 - chr2R 6050404 intergenic CG34212 - chr2R_7_6050001 chr2R_6050001 RAL-491 368 chr2R 6096723 6096740 chr2R 6101918 6101920 BS 5 5191 7.5 7.0 7.2 0.6 5197 chr2R 6096723 intron EcR - chr2R 6099322 intron EcR - chr2R 6101920 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-491 369 chr2R 6126948 6126960 chr2R 6127055 6127067 4 108 5.0 1.5 3.2 1.0 119 chr2R 6126948 intron EcR - chr2R 6127008 intron EcR - chr2R 6127067 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-491 370 chr2R 6168212 6168228 chr2R 6168294 6168306 4 80 2.0 1.5 1.8 1.4 94 chr2R 6168212 intron EcR - chr2R 6168259 intron EcR - chr2R 6168306 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-491 371 chr2R 6530553 6530569 chr2R 6530677 6530702 5 131 1.5 2.5 2.0 1.7 149 chr2R 6530553 intron jing + chr2R 6530628 intron jing + chr2R 6530702 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-491 372 chr2R 6538378 6538411 chr2R 6538456 6538489 10 76 2.0 2.0 2.0 3.3 111 chr2R 6538378 intron jing + chr2R 6538434 intron jing + chr2R 6538489 intron jing + chr2R_10_6535001 chr2R_6535001 RAL-491 373 chr2R 6597874 6597905 chr2R 6597960 6597993 11 81 2.5 4.5 3.5 2.4 119 chr2R 6597874 intron jing + chr2R 6597934 intron jing + chr2R 6597993 intron jing + chr2R_11_6595001 chr2R_6595001 RAL-491 374 chr2R 6607928 6607955 chr2R 6608029 6608057 8 100 3.0 2.0 2.5 2.3 129 chr2R 6607928 intron jing + chr2R 6607992 intron jing + chr2R 6608057 intron jing + chr2R_8_6605001 chr2R_6605001 RAL-491 375 chr2R 6691125 6691154 chr2R 6691204 6691233 9 79 2.5 3.0 2.8 2.4 108 chr2R 6691125 intron CG9422 + chr2R 6691179 intron CG9422 + chr2R 6691233 intron CG9422 + chr2R_9_6690001 chr2R_6690001 RAL-491 376 chr2R 6696614 6696642 chr2R 6696688 6696708 6 78 4.5 2.0 3.2 1.4 94 chr2R 6696614 5` UTR Mob4 - chr2R 6696661 5` UTR Mob4 - chr2R 6696708 intergenic Rab2 +,Mob4 - chr2R_6_6695001 chr2R_6695001 RAL-491 377 chr2R 6712586 6712600 chr2R 6712682 6712697 6 97 4.0 5.0 4.5 1.1 111 chr2R 6712586 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_6_6710001 chr2R_6710001 RAL-491 378 chr2R 6846312 6846321 chr2R 6846389 6846398 4 77 1.5 4.0 2.8 1.1 86 chr2R 6846312 intergenic not near genes chr2R 6846355 intergenic not near genes chr2R 6846398 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-491 379 chr2R 6876225 6876237 chr2R 6876306 6876318 5 80 5.5 3.0 4.2 1.0 93 chr2R 6876225 intron,intron CR44169 +,Spn42Da - chr2R 6876272 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876318 5` UTR,intron CR44169 +,Spn42Da - chr2R_5_6875001 chr2R_6875001 RAL-491 380 chr2R 6885184 6885198 chr2R 6885282 6885295 6 97 0.0 5.0 2.5 1.7 111 chr2R 6885184 intergenic Spn42Dd +,Spn42De + chr2R 6885240 intergenic Spn42De +,Spn42Dd + chr2R 6885295 intergenic Spn42De +,Spn42Dd + chr2R_6_6885001 chr2R_6885001 RAL-491 381 chr2R 6919462 6919483 chr2R 6919540 6919555 9 79 0.5 2.0 1.2 4.1 93 chr2R 6919462 intron CG30158 + chr2R 6919508 intron CG30158 + chr2R 6919555 intron CG30158 + chr2R_9_6915001 chr2R_6915001 RAL-491 382 chr2R 6964150 6964178 chr2R 6964238 6964266 4 86 1.0 4.5 2.8 1.1 116 chr2R 6964150 intron,intron mim -,CheB42c - chr2R 6964208 intron,intron mim -,CheB42c - chr2R 6964266 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-491 383 chr2R 7171274 7171283 chr2R 7171356 7171369 8 83 3.0 5.5 4.2 1.5 95 chr2R 7171274 intron pk + chr2R 7171322 intron pk + chr2R 7171369 intron pk + chr2R_8_7170001 chr2R_7170001 RAL-491 384 chr2R 7196574 7196591 chr2R 7201349 7201366 F-element 4 4775 3.0 1.0 2.0 1.3 4792 chr2R 7196574 intron pk + chr2R 7198970 intron pk + chr2R 7201366 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-491 385 chr2R 7235823 7235851 chr2R 7240911 7240926 jockey 10 5088 2.5 1.5 2.0 3.3 5103 chr2R 7235823 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240926 intergenic not near genes chr2R_10_7235001 chr2R_7235001 RAL-491 386 chr2R 7563100 7563126 chr2R 7563179 7563203 5 77 2.5 5.0 3.8 1.0 103 chr2R 7563100 3` UTR Corin + chr2R 7563152 3` UTR Corin + chr2R 7563203 3` UTR Corin + chr2R_5_7560001 chr2R_7560001 RAL-491 387 chr2R 7608414 7608435 chr2R 7613613 7613624 I-element 4 5198 1.5 0.0 0.8 2.2 5210 chr2R 7608414 intron CG1358 - chr2R 7611019 intron CG1358 - chr2R 7613624 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-491 388 chr2R 7692011 7692037 chr2R 7692092 7692117 5 79 0.5 1.0 0.8 2.8 106 chr2R 7692011 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692117 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-491 389 chr2R 7766657 7766684 chr2R 7767001 7767026 6 342 6.0 6.0 6.0 0.9 369 chr2R 7766657 intron,intron CG30497 -,CG45093 - chr2R 7766842 intron,intron CG30497 -,CG45093 - chr2R 7767026 intron,intron CG30497 -,CG45093 - chr2R_6_7765001 chr2R_7765001 RAL-491 390 chr2R 7769740 7769770 chr2R 7769816 7769847 9 74 2.5 1.5 2.0 3.0 107 chr2R 7769740 intron,intron CG30497 -,CG45093 - chr2R 7769794 intron,intron CG30497 -,CG45093 - chr2R 7769847 intron,intron CG30497 -,CG45093 - chr2R_9_7765001 chr2R_7765001 RAL-491 391 chr2R 7815680 7815705 chr2R 7822149 7822174 Burdock 7 6468 2.5 3.0 2.8 1.8 6494 chr2R 7815680 intergenic CG1882 + chr2R 7818927 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-491 392 chr2R 7869195 7869216 chr2R 7873979 7873980 Doc 7 4781 4.5 5.0 4.8 1.2 4785 chr2R 7869195 intron Dgk - chr2R 7871588 intron Dgk - chr2R 7873980 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-491 393 chr2R 7897147 7897155 chr2R 7897217 7897235 5 78 0.0 3.5 1.8 1.8 88 chr2R 7897147 intron CG30377 + chr2R 7897191 intron CG30377 + chr2R 7897235 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-491 394 chr2R 7916426 7916453 chr2R 7916509 7916537 9 82 3.5 4.5 4.0 1.8 111 chr2R 7916426 5` UTR CG12159 - chr2R 7916482 intergenic CG12159 -,Cul1 + chr2R 7916537 intergenic CG12159 -,Cul1 + chr2R_9_7915001 chr2R_7915001 RAL-491 395 chr2R 8067063 8067095 chr2R 8067147 8067179 9 84 0.0 2.0 1.0 4.5 116 chr2R 8067063 intron CG17977 - chr2R 8067121 intron CG17977 - chr2R 8067179 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-491 396 chr2R 8089253 8089285 chr2R 8089339 8089370 12 83 2.5 1.5 2.0 4.0 117 chr2R 8089253 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089370 intergenic sut2 +,sut3 + chr2R_12_8085001 chr2R_8085001 RAL-491 397 chr2R 8105933 8105967 chr2R 8106023 8106058 10 90 2.5 5.5 4.0 2.0 125 chr2R 8105933 5` UTR Cul4 - chr2R 8105996 intron Cul4 - chr2R 8106058 5` UTR Cul4 - chr2R_10_8105001 chr2R_8105001 RAL-491 398 chr2R 8155587 8155613 chr2R 8155669 8155702 13 87 3.0 3.0 3.0 3.2 115 chr2R 8155587 intron,intron Lpin -,kermit - chr2R 8155644 intron,intron Lpin -,kermit - chr2R 8155702 intron,intron Lpin -,kermit - chr2R_13_8155001 chr2R_8155001 RAL-491 399 chr2R 8236039 8236064 chr2R 8236120 8236144 5 76 2.5 2.5 2.5 1.4 105 chr2R 8236039 intergenic not near genes chr2R 8236092 intergenic not near genes chr2R 8236144 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-491 400 chr2R 8249562 8249595 chr2R 8249644 8249669 8 79 3.0 0.5 1.8 2.9 107 chr2R 8249562 5` UTR CG44439 - chr2R 8249616 intergenic CG44439 - chr2R 8249669 intergenic CG44439 - chr2R_8_8245001 chr2R_8245001 RAL-491 401 chr2R 8330874 8330892 chr2R 8331351 8331371 roo 6 483 4.0 1.0 2.5 1.7 497 chr2R 8330874 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331371 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-491 402 chr2R 8382018 8382049 chr2R 8382096 8382126 4 78 0.0 2.5 1.2 1.8 108 chr2R 8382018 intron pdm3 + chr2R 8382072 intron pdm3 + chr2R 8382126 intron pdm3 + chr2R_4_8380001 chr2R_8380001 RAL-491 403 chr2R 8478215 8478248 chr2R 8478307 8478340 13 89 4.5 2.0 3.2 3.1 125 chr2R 8478215 intron mtt - chr2R 8478278 intron mtt - chr2R 8478340 intron mtt - chr2R_13_8475001 chr2R_8475001 RAL-491 404 chr2R 8722765 8722792 chr2R 8723006 8723027 pogo 12 237 3.0 4.0 3.5 2.7 262 chr2R 8722765 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723027 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-491 405 chr2R 8877905 8877933 chr2R 8878098 8878126 4 192 2.5 2.5 2.5 1.1 221 chr2R 8877905 intron RyR + chr2R 8878016 intron RyR + chr2R 8878126 intron RyR + chr2R_4_8875001 chr2R_8875001 RAL-491 406 chr2R 9065913 9065950 chr2R 9065995 9066029 7 81 2.0 2.5 2.2 2.2 116 chr2R 9065913 intron ana + chr2R 9065971 intron ana + chr2R 9066029 intron ana + chr2R_7_9065001 chr2R_9065001 RAL-491 407 chr2R 9212712 9212723 chr2R 9213180 9213208 roo 5 474 4.0 4.5 4.2 1.0 496 chr2R 9212712 intergenic CR45309 + chr2R 9212960 intergenic CR45309 + chr2R 9213208 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-491 408 chr2R 9270445 9270475 chr2R 9270532 9270534 10 74 2.0 2.0 2.0 3.3 89 chr2R 9270445 intron Pkn - chr2R 9270490 intron Pkn - chr2R 9270534 intron Pkn - chr2R_10_9270001 chr2R_9270001 RAL-491 409 chr2R 9368126 9368155 chr2R 9368202 9368231 6 72 1.0 0.0 0.5 4.0 105 chr2R 9368126 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368231 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-491 410 chr2R 9378129 9378143 chr2R 9378197 9378225 4 73 4.0 5.0 4.5 0.7 96 chr2R 9378129 intron CG13954 - chr2R 9378177 intron CG13954 - chr2R 9378225 intron CG13954 - chr2R_4_9375001 chr2R_9375001 RAL-491 411 chr2R 9462893 9462910 chr2R 9462974 9462991 8 80 4.5 6.5 5.5 1.2 98 chr2R 9462893 intron Camta + chr2R 9462942 intron Camta + chr2R 9462991 intron Camta + chr2R_8_9460001 chr2R_9460001 RAL-491 412 chr2R 9535608 9535640 chr2R 9535751 9535783 7 143 2.5 1.0 1.8 2.5 175 chr2R 9535608 intron brp + chr2R 9535696 intron brp + chr2R 9535783 intron brp + chr2R_7_9535001 chr2R_9535001 RAL-491 413 chr2R 9653263 9653287 chr2R 9653345 9653371 11 84 0.5 3.0 1.8 3.9 108 chr2R 9653263 intron Mmp2 - chr2R 9653317 intron Mmp2 - chr2R 9653371 intron Mmp2 - chr2R_11_9650001 chr2R_9650001 RAL-491 414 chr2R 9950298 9950310 chr2R 9950373 9950387 6 76 5.5 1.0 3.2 1.4 89 chr2R 9950298 intron Mef2 - chr2R 9950342 intron Mef2 - chr2R 9950387 intron Mef2 - chr2R_6_9950001 chr2R_9950001 RAL-491 415 chr2R 9950312 9950326 chr2R 9950372 9950403 5 70 1.5 1.0 1.2 2.3 91 chr2R 9950312 intron Mef2 - chr2R 9950358 intron Mef2 - chr2R 9950403 intron Mef2 - chr2R_5_9950001 chr2R_9950001 RAL-491 416 chr2R 10017655 10017673 chr2R 10017734 10017752 6 78 3.5 1.5 2.5 1.7 97 chr2R 10017655 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017752 intron Pka-R2 - chr2R_6_10015001 chr2R_10015001 RAL-491 417 chr2R 10270167 10270205 chr2R 10270259 10270273 5 85 1.5 3.0 2.2 1.6 106 chr2R 10270167 intron CAP + chr2R 10270220 intron CAP + chr2R 10270273 intron CAP + chr2R_5_10270001 chr2R_10270001 RAL-491 418 chr2R 10313320 10313354 chr2R 10313408 10313442 7 87 1.0 4.0 2.5 2.0 122 chr2R 10313320 intergenic not near genes chr2R 10313381 intergenic not near genes chr2R 10313442 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-491 419 chr2R 10352673 10352704 chr2R 10352750 10352766 11 74 1.5 4.0 2.8 2.9 93 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352766 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-491 420 chr2R 10368978 10369005 chr2R 10369066 10369084 10 84 4.5 3.5 4.0 2.0 106 chr2R 10368978 intron CG42732 - chr2R 10369031 intron CG42732 - chr2R 10369084 intron CG42732 - chr2R_10_10365001 chr2R_10365001 RAL-491 421 chr2R 10409071 10409083 chr2R 10409147 10409159 4 76 1.0 3.5 2.2 1.2 88 chr2R 10409071 intron CG42732 - chr2R 10409115 intron CG42732 - chr2R 10409159 intron,exon CG42732 -,CG33477 - chr2R_4_10405001 chr2R_10405001 RAL-491 422 chr2R 10429019 10429036 chr2R 10429096 10429098 6 74 2.0 4.0 3.0 1.5 79 chr2R 10429019 intergenic not near genes chr2R 10429058 intergenic not near genes chr2R 10429098 intergenic not near genes chr2R_6_10425001 chr2R_10425001 RAL-491 423 chr2R 10469025 10469050 chr2R 10469146 10469176 9 124 1.5 3.0 2.2 2.8 151 chr2R 10469025 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469176 intron CG11777 + chr2R_9_10465001 chr2R_10465001 RAL-491 424 chr2R 10585578 10585588 chr2R 10594147 10594171 Tirant 5 8578 3.5 3.0 3.2 1.2 8593 chr2R 10585578 intron psq + chr2R 10589874 intron psq + chr2R 10594171 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-491 425 chr2R 10653208 10653236 chr2R 10653283 10653286 10 73 0.5 2.0 1.2 4.5 78 chr2R 10653208 intergenic not near genes chr2R 10653247 intergenic not near genes chr2R 10653286 intergenic not near genes chr2R_10_10650001 chr2R_10650001 RAL-491 426 chr2R 10658054 10658083 chr2R 10658146 10658175 8 92 6.0 2.5 4.2 1.5 121 chr2R 10658054 intergenic not near genes chr2R 10658114 intergenic not near genes chr2R 10658175 intergenic not near genes chr2R_8_10655001 chr2R_10655001 RAL-491 427 chr2R 10671250 10671276 chr2R 10671328 10671354 9 75 3.0 1.5 2.2 2.8 104 chr2R 10671250 intergenic not near genes chr2R 10671302 intergenic not near genes chr2R 10671354 intergenic not near genes chr2R_9_10670001 chr2R_10670001 RAL-491 428 chr2R 10761556 10761588 chr2R 10761710 10761742 9 154 2.0 1.5 1.8 3.2 186 chr2R 10761556 intron,5` UTR CG33144 -,CR43605 + chr2R 10761649 intron,5` UTR CG33144 -,CR43605 + chr2R 10761742 intron CG33144 - chr2R_9_10760001 chr2R_10760001 RAL-491 429 chr2R 10770994 10771027 chr2R 10771075 10771108 5 81 4.0 4.0 4.0 1.0 114 chr2R 10770994 intron CG33144 - chr2R 10771051 intron CG33144 - chr2R 10771108 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-491 430 chr2R 10948025 10948054 chr2R 10955576 10955605 17.6 7 7550 0.0 2.0 1.0 3.5 7580 chr2R 10948025 intergenic not near genes chr2R 10951815 intergenic not near genes chr2R 10955605 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-491 431 chr2R 10979671 10979679 chr2R 10980133 10980151 297 4 469 0.0 2.0 1.0 2.0 480 chr2R 10979671 intergenic not near genes chr2R 10979911 intergenic not near genes chr2R 10980151 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-491 432 chr2R 11009815 11009847 chr2R 11018989 11019020 roo 6 9168 3.5 1.0 2.2 1.9 9205 chr2R 11009815 intron luna - chr2R 11014418 intron luna - chr2R 11019020 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-491 433 chr2R 11064707 11064734 chr2R 11064784 11064817 5 81 2.0 2.0 2.0 1.7 110 chr2R 11064707 intron luna - chr2R 11064762 intron luna - chr2R 11064817 intron luna - chr2R_5_11060001 chr2R_11060001 RAL-491 434 chr2R 11147668 11147697 chr2R 11147804 11147829 6 135 1.0 4.5 2.8 1.6 161 chr2R 11147668 intron,3` UTR CG13229 -,CG12391 - chr2R 11147748 intron,3` UTR CG13229 -,CG12391 - chr2R 11147829 intron,3` UTR CG13229 -,CG12391 - chr2R_6_11145001 chr2R_11145001 RAL-491 435 chr2R 11199018 11199036 chr2R 11199092 11199112 7 75 3.0 4.0 3.5 1.6 94 chr2R 11199018 intron shn + chr2R 11199065 intron shn + chr2R 11199112 intron shn + chr2R_7_11195001 chr2R_11195001 RAL-491 436 chr2R 11207813 11207843 chr2R 11208005 11208033 BS 7 190 2.5 5.0 3.8 1.5 220 chr2R 11207813 intron shn + chr2R 11207923 intron shn + chr2R 11208033 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-491 437 chr2R 11249182 11249202 chr2R 11249299 11249328 4 124 1.0 0.0 0.5 2.7 146 chr2R 11249182 intergenic CG43112 + chr2R 11249255 intergenic CG43112 + chr2R 11249328 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-491 438 chr2R 11415519 11415549 chr2R 11418668 11418697 opus 6 3146 2.0 4.0 3.0 1.5 3178 chr2R 11415519 intron Drip - chr2R 11417108 intron Drip - chr2R 11418697 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-491 439 chr2R 11472657 11472680 chr2R 11473846 11473871 pogo 9 1194 4.5 4.0 4.2 1.7 1214 chr2R 11472657 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-491 440 chr2R 11568703 11568732 chr2R 11568811 11568842 5 107 2.0 4.0 3.0 1.2 139 chr2R 11568703 intergenic not near genes chr2R 11568772 intergenic not near genes chr2R 11568842 intergenic not near genes chr2R_5_11565001 chr2R_11565001 RAL-491 441 chr2R 11822997 11823004 chr2R 11823054 11823079 4 64 1.0 2.5 1.8 1.4 82 chr2R 11822997 intergenic not near genes chr2R 11823038 intergenic not near genes chr2R 11823079 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-491 442 chr2R 11945895 11945910 chr2R 11945960 11945961 7 68 5.0 5.0 5.0 1.2 66 chr2R 11945895 intron CG13188 + chr2R 11945928 intron CG13188 + chr2R 11945961 intron CG13188 + chr2R_7_11945001 chr2R_11945001 RAL-491 443 chr2R 11970835 11970854 chr2R 11970906 11970924 6 75 6.0 2.5 4.2 1.2 89 chr2R 11970835 5` UTR CG8290 + chr2R 11970880 5` UTR CG8290 + chr2R 11970924 5` UTR CG8290 + chr2R_6_11970001 chr2R_11970001 RAL-491 444 chr2R 8518777 8518793 chr2R 12066171 12066199 7 3547401 14.0 6.5 10.2 0.6 3547422 chr2R 8518777 intron mtt - chr2R 10292488 intron CAP + chr2R 12066199 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-491 445 chr2R 12124833 12124862 chr2R 12124917 12124946 4 83 3.0 1.5 2.2 1.2 113 chr2R 12124833 intergenic not near genes chr2R 12124890 intergenic not near genes chr2R 12124946 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-491 446 chr2R 12186003 12186037 chr2R 12186098 12186132 6 93 0.5 3.5 2.0 2.0 129 chr2R 12186003 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186132 intron Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-491 447 chr2R 12187472 12187504 chr2R 12190088 12190124 26 2625 77.5 61.5 69.5 0.4 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_26_12185001 chr2R_12185001 RAL-491 448 chr2R 12217579 12217597 chr2R 12217660 12217678 5 78 1.0 3.5 2.2 1.6 99 chr2R 12217579 intergenic not near genes chr2R 12217628 intergenic not near genes chr2R 12217678 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-491 449 chr2R 12285388 12285409 chr2R 12285485 12285501 4 96 0.5 0.0 0.2 3.3 113 chr2R 12285388 intron CG42700 + chr2R 12285444 intron CG42700 + chr2R 12285501 intron CG42700 + chr2R_4_12285001 chr2R_12285001 RAL-491 450 chr2R 12363380 12363416 chr2R 12363812 12363848 11 428 1.0 6.5 3.8 2.3 468 chr2R 12363380 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_11_12360001 chr2R_12360001 RAL-491 451 chr2R 12377503 12377524 chr2R 12377618 12377646 12 120 2.5 1.5 2.0 4.0 143 chr2R 12377503 intergenic Cpr49Aa + chr2R 12377574 intergenic Cpr49Aa + chr2R 12377646 intergenic Cpr49Aa + chr2R_12_12375001 chr2R_12375001 RAL-491 452 chr2R 12481150 12481167 chr2R 12482938 12482965 roo 4 1797 1.0 3.5 2.2 1.2 1815 chr2R 12481150 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482965 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-491 453 chr2R 12536141 12536155 chr2R 12536229 12536243 4 85 0.5 4.0 2.2 1.2 102 chr2R 12536141 intron fra + chr2R 12536192 intron fra + chr2R 12536243 intron fra + chr2R_4_12535001 chr2R_12535001 RAL-491 454 chr2R 12625519 12625540 chr2R 12625597 12625607 5 69 0.0 0.5 0.2 4.2 88 chr2R 12625519 intergenic CG30054 +,CG17760 + chr2R 12625563 intergenic CG30054 +,CG17760 + chr2R 12625607 intergenic CG17760 +,CG30054 + chr2R_5_12625001 chr2R_12625001 RAL-491 455 chr2R 12695242 12695265 chr2R 12695328 12695351 12 85 3.0 1.0 2.0 4.0 109 chr2R 12695242 intergenic not near genes chr2R 12695296 intergenic not near genes chr2R 12695351 intergenic not near genes chr2R_12_12695001 chr2R_12695001 RAL-491 456 chr2R 12700189 12700210 chr2R 12702140 12702160 4 1951 3.5 16.0 9.8 0.4 1971 chr2R 12700189 5` UTR wuc + chr2R 12701174 intergenic wuc + chr2R 12702160 intergenic not near genes chr2R_4_12700001 chr2R_12700001 RAL-491 457 chr2R 12739142 12739155 chr2R 12739209 12739222 4 71 1.5 2.5 2.0 1.3 80 chr2R 12739142 intron CG42663 + chr2R 12739182 intron CG42663 + chr2R 12739222 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-491 458 chr2R 12771324 12771344 chr2R 12771433 12771453 6 109 3.5 1.5 2.5 1.7 129 chr2R 12771324 intergenic not near genes chr2R 12771388 intergenic not near genes chr2R 12771453 intergenic not near genes chr2R_6_12770001 chr2R_12770001 RAL-491 459 chr2R 12819467 12819478 chr2R 12824523 12824546 jockey 4 5065 2.0 2.5 2.2 1.2 5079 chr2R 12819467 intergenic not near genes chr2R 12822006 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-491 460 chr2R 13136847 13136867 chr2R 13141643 13141664 Doc 9 4794 6.5 3.5 5.0 1.5 4817 chr2R 13136847 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141664 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-491 461 chr2R 13305504 13305511 chr2R 13305586 13305589 4 80 9.5 7.5 8.5 0.4 85 chr2R 13305504 intergenic not near genes chr2R 13305546 intergenic not near genes chr2R 13305589 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-491 462 chr2R 13321928 13321952 chr2R 13322034 13322058 7 106 3.5 1.0 2.2 2.2 130 chr2R 13321928 intergenic not near genes chr2R 13321993 intergenic not near genes chr2R 13322058 intergenic not near genes chr2R_7_13320001 chr2R_13320001 RAL-491 463 chr2R 13356512 13356537 chr2R 13356590 13356622 7 82 4.5 3.0 3.8 1.5 110 chr2R 13356512 intergenic not near genes chr2R 13356567 intergenic not near genes chr2R 13356622 intergenic not near genes chr2R_7_13355001 chr2R_13355001 RAL-491 464 chr2R 13431839 13431871 chr2R 13431946 13431978 17 106 4.0 0.5 2.2 5.3 139 chr2R 13431839 intron CG42321 - chr2R 13431908 intron CG42321 - chr2R 13431978 intron CG42321 - chr2R_17_13430001 chr2R_13430001 RAL-491 465 chr2R 13439112 13439225 chr2R 13439226 13439301 7 114 0.0 0.0 0.0 7.0 189 chr2R 13439112 intergenic CG42321 -,cnn - chr2R 13439206 intergenic cnn -,CG42321 - chr2R 13439301 intergenic cnn -,CG42321 - chr2R_7_13435001 chr2R_13435001 RAL-491 466 chr2R 13446690 13446707 chr2R 13446771 13446788 5 79 2.0 0.0 1.0 2.5 98 chr2R 13446690 intron cnn - chr2R 13446739 intron cnn - chr2R 13446788 intron cnn - chr2R_5_13445001 chr2R_13445001 RAL-491 467 chr2R 13566257 13566291 chr2R 13566337 13566371 15 78 3.0 0.0 1.5 6.0 114 chr2R 13566257 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_15_13565001 chr2R_13565001 RAL-491 468 chr2R 13567244 13567268 chr2R 13567326 13567350 7 82 2.5 4.5 3.5 1.6 106 chr2R 13567244 intergenic not near genes chr2R 13567297 intergenic not near genes chr2R 13567350 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-491 469 chr2R 13650026 13650029 chr2R 13650120 13650124 4 95 1.5 1.0 1.2 1.8 98 chr2R 13650026 intron fas + chr2R 13650075 intron fas + chr2R 13650124 intron fas + chr2R_4_13650001 chr2R_13650001 RAL-491 470 chr2R 13663612 13663627 chr2R 13663689 13663699 7 77 5.5 4.5 5.0 1.2 87 chr2R 13663612 intron fas + chr2R 13663656 intron fas + chr2R 13663699 intron fas + chr2R_7_13660001 chr2R_13660001 RAL-491 471 chr2R 13728136 13728167 chr2R 13735793 13735824 opus 7 7656 1.0 2.0 1.5 2.8 7688 chr2R 13728136 intron fas + chr2R 13731980 intron fas + chr2R 13735824 intron fas + chr2R_7_13730001 chr2R_13730001 RAL-491 472 chr2R 13771420 13771447 chr2R 13771495 13771508 4 72 1.0 0.5 0.8 2.2 88 chr2R 13771420 intron Cpr50Ca + chr2R 13771464 intron Cpr50Ca + chr2R 13771508 intron Cpr50Ca + chr2R_4_13770001 chr2R_13770001 RAL-491 473 chr2R 13905617 13905624 chr2R 13907589 13907606 Rt1a 4 1980 0.5 3.5 2.0 1.3 1989 chr2R 13905617 intron shot - chr2R 13906612 intron shot - chr2R 13907606 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-491 474 chr2R 13925848 13925873 chr2R 13926024 13926049 8 174 1.0 4.0 2.5 2.3 201 chr2R 13925848 intron shot - chr2R 13925948 intron shot - chr2R 13926049 intron shot - chr2R_8_13925001 chr2R_13925001 RAL-491 475 chr2R 13986881 13986912 chr2R 13986970 13987000 9 87 1.0 1.5 1.2 4.1 119 chr2R 13986881 intron RN-tre - chr2R 13986940 intron RN-tre - chr2R 13987000 intron RN-tre - chr2R_9_13985001 chr2R_13985001 RAL-491 476 chr2R 14018161 14018183 chr2R 14018245 14018267 7 82 2.0 5.0 3.5 1.6 106 chr2R 14018161 intron mam + chr2R 14018214 intron mam + chr2R 14018267 intron mam + chr2R_7_14015001 chr2R_14015001 RAL-491 477 chr2R 14129731 14129734 chr2R 14129826 14129826 4 97 1.5 0.5 1.0 2.0 95 chr2R 14129731 intron Prosap - chr2R 14129778 intron Prosap - chr2R 14129826 intron Prosap - chr2R_4_14125001 chr2R_14125001 RAL-491 478 chr2R 14277581 14277609 chr2R 14277663 14277690 8 80 4.0 3.0 3.5 1.8 109 chr2R 14277581 5` UTR Ih + chr2R 14277636 5` UTR Ih + chr2R 14277690 5` UTR Ih + chr2R_8_14275001 chr2R_14275001 RAL-491 479 chr2R 14294832 14294861 chr2R 14294910 14294941 8 80 4.5 3.5 4.0 1.6 109 chr2R 14294832 intron Ih + chr2R 14294886 intron Ih + chr2R 14294941 intron Ih + chr2R_8_14290001 chr2R_14290001 RAL-491 480 chr2R 14365308 14365332 chr2R 14365380 14365410 15 76 2.5 2.0 2.2 4.7 102 chr2R 14365308 exon Tfb1 + chr2R 14365359 3` UTR Tfb1 + chr2R 14365410 3` UTR Tfb1 + chr2R_15_14365001 chr2R_14365001 RAL-491 481 chr2R 14393879 14393895 chr2R 14393949 14393980 9 74 6.0 2.0 4.0 1.8 101 chr2R 14393879 intergenic not near genes chr2R 14393930 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-491 482 chr2R 14467315 14467322 chr2R 14476463 14476480 roo 7 9156 4.0 5.0 4.5 1.3 9165 chr2R 14467315 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-491 483 chr2R 14497390 14497412 chr2R 14498556 14498573 1360 6 1161 1.5 3.0 2.2 1.9 1183 chr2R 14497390 3` UTR Cpsf160 - chr2R 14497982 intron Cpsf160 - chr2R 14498573 3` UTR Cpsf160 - chr2R_6_14495001 chr2R_14495001 RAL-491 484 chr2R 14497414 14497420 chr2R 14498553 14498575 1360 4 1154 0.5 2.5 1.5 1.6 1161 chr2R 14497414 3` UTR Cpsf160 - chr2R 14497994 intron Cpsf160 - chr2R 14498575 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-491 485 chr2R 14538962 14538984 chr2R 14539035 14539054 5 68 2.5 3.5 3.0 1.2 92 chr2R 14538962 intron ttv + chr2R 14539008 intron ttv + chr2R 14539054 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-491 486 chr2R 14541225 14541258 chr2R 14541482 14541515 4 257 2.0 1.5 1.8 1.4 290 chr2R 14541225 intron ttv + chr2R 14541370 intron ttv + chr2R 14541515 intron ttv + chr2R_4_14540001 chr2R_14540001 RAL-491 487 chr2R 14565561 14565587 chr2R 14565637 14565658 8 73 1.5 2.0 1.8 2.9 97 chr2R 14565561 intron ttv + chr2R 14565610 intron ttv + chr2R 14565658 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-491 488 chr2R 14610252 14610277 chr2R 14610337 14610363 13 87 3.5 3.0 3.2 3.1 111 chr2R 14610252 exon Su(var)2-HP2 - chr2R 14610308 exon Su(var)2-HP2 - chr2R 14610363 exon Su(var)2-HP2 - chr2R_13_14610001 chr2R_14610001 RAL-491 489 chr2R 14799865 14799890 chr2R 14799941 14799959 4 70 1.5 2.0 1.8 1.4 94 chr2R 14799865 intron kn - chr2R 14799912 intron kn - chr2R 14799959 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-491 490 chr2R 14816124 14816137 chr2R 14816202 14816223 4 84 3.0 1.0 2.0 1.3 99 chr2R 14816124 intergenic not near genes chr2R 14816174 intergenic not near genes chr2R 14816223 intergenic not near genes chr2R_4_14815001 chr2R_14815001 RAL-491 491 chr2R 14872333 14872351 chr2R 14872444 14872462 4 111 4.0 2.0 3.0 1.0 129 chr2R 14872333 exon Cyp6a22 + chr2R 14872398 exon Cyp6a22 + chr2R 14872462 exon Cyp6a22 + chr2R_4_14870001 chr2R_14870001 RAL-491 492 chr2R 14889210 14889242 chr2R 14897818 14897837 Max-element 4 8604 4.0 0.0 2.0 1.3 8627 chr2R 14889210 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897837 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-491 493 chr2R 14911707 14911727 chr2R 14911827 14911837 4 118 3.0 3.5 3.2 1.0 130 chr2R 14911707 intron CG10249 - chr2R 14911772 intron CG10249 - chr2R 14911837 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-491 494 chr2R 14939943 14939949 chr2R 14940003 14940022 5 71 0.0 1.5 0.8 2.8 79 chr2R 14939943 3` UTR Lap1 + chr2R 14939982 3` UTR Lap1 + chr2R 14940022 3` UTR Lap1 + chr2R_5_14935001 chr2R_14935001 RAL-491 495 chr2R 14979768 14979791 chr2R 14979838 14979867 6 75 0.0 3.0 1.5 2.4 99 chr2R 14979768 3` UTR ckn + chr2R 14979818 3` UTR ckn + chr2R 14979867 3` UTR ckn + chr2R_6_14975001 chr2R_14975001 RAL-491 496 chr2R 15004732 15004755 chr2R 15005055 15005084 jockey 4 328 3.5 3.0 3.2 1.0 352 chr2R 15004732 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005084 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-491 497 chr2R 15015476 15015488 chr2R 15022900 15022912 mdg1 4 7424 2.0 5.5 3.8 0.8 7436 chr2R 15015476 intron hbs + chr2R 15019194 intron hbs + chr2R 15022912 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-491 498 chr2R 15084987 15085007 chr2R 15092036 15092050 297 6 7048 5.0 4.5 4.8 1.0 7063 chr2R 15084987 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-491 499 chr2R 15119321 15119351 chr2R 15127798 15127831 Tirant 7 8478 1.5 1.0 1.2 3.2 8510 chr2R 15119321 intron chn + chr2R 15123576 intron chn + chr2R 15127831 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-491 500 chr2R 15133484 15133507 chr2R 15133557 15133586 6 75 5.0 4.0 4.5 1.1 102 chr2R 15133484 intron chn + chr2R 15133535 intron chn + chr2R 15133586 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-491 501 chr2R 15162098 15162121 chr2R 15162174 15162197 7 75 4.0 2.0 3.0 1.8 99 chr2R 15162098 intron igl + chr2R 15162148 intron igl + chr2R 15162197 intron igl + chr2R_7_15160001 chr2R_15160001 RAL-491 502 chr2R 15202964 15202989 chr2R 15203054 15203079 8 87 1.5 3.0 2.2 2.5 115 chr2R 15202964 intron,3` UTR CG11807 +,CG42391 + chr2R 15203022 exon CG11807 + chr2R 15203079 exon CG11807 + chr2R_8_15200001 chr2R_15200001 RAL-491 503 chr2R 15333932 15333944 chr2R 15334095 15334105 4 158 0.5 1.5 1.0 2.0 173 chr2R 15333932 exon Hr51 + chr2R 15334018 intron Hr51 + chr2R 15334105 intron Hr51 + chr2R_4_15330001 chr2R_15330001 RAL-491 504 chr2R 15527947 15527979 chr2R 15528024 15528057 12 78 0.5 1.5 1.0 6.0 110 chr2R 15527947 intron Khc-73 - chr2R 15528002 intron Khc-73 - chr2R 15528057 intron Khc-73 - chr2R_12_15525001 chr2R_15525001 RAL-491 505 chr2R 15621170 15621197 chr2R 15621396 15621426 8 228 1.5 1.0 1.2 3.6 256 chr2R 15621170 intron CG42524 + chr2R 15621298 intron CG42524 + chr2R 15621426 intron CG42524 + chr2R_8_15620001 chr2R_15620001 RAL-491 506 chr2R 15898886 15898910 chr2R 15898976 15899006 5 96 2.0 2.5 2.2 1.6 120 chr2R 15898886 intron sli - chr2R 15898946 intron sli - chr2R 15899006 intron sli - chr2R_5_15895001 chr2R_15895001 RAL-491 507 chr2R 16066139 16066147 chr2R 16066215 16066223 4 76 0.0 4.5 2.2 1.2 84 chr2R 16066139 intergenic not near genes chr2R 16066181 intergenic not near genes chr2R 16066223 intergenic not near genes chr2R_4_16065001 chr2R_16065001 RAL-491 508 chr2R 16245425 16245430 chr2R 16245519 16245524 4 94 3.0 0.5 1.8 1.4 99 chr2R 16245425 intron CngA - chr2R 16245474 intron CngA - chr2R 16245524 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-491 509 chr2R 16474341 16474369 chr2R 16474426 16474455 7 84 2.5 4.5 3.5 1.6 114 chr2R 16474341 intergenic not near genes chr2R 16474398 intergenic not near genes chr2R 16474455 intergenic not near genes chr2R_7_16470001 chr2R_16470001 RAL-491 510 chr2R 16511811 16511832 chr2R 16511961 16511994 7 158 2.0 0.0 1.0 3.5 183 chr2R 16511811 intron Sema-2a + chr2R 16511902 intron Sema-2a + chr2R 16511994 intron Sema-2a + chr2R_7_16510001 chr2R_16510001 RAL-491 511 chr2R 16617069 16617088 chr2R 16617140 16617160 7 75 3.0 3.0 3.0 1.8 91 chr2R 16617069 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617160 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-491 512 chr2R 16918236 16918268 chr2R 16918313 16918329 7 70 1.0 2.5 1.8 2.5 93 chr2R 16918236 intergenic not near genes chr2R 16918282 intergenic not near genes chr2R 16918329 intergenic not near genes chr2R_7_16915001 chr2R_16915001 RAL-491 513 chr2R 16981967 16982098 chr2R 16982072 16982173 5 96 0.0 0.0 0.0 5.0 206 chr2R 16981967 intron Cbp53E + chr2R 16982070 intron Cbp53E + chr2R 16982173 intron Cbp53E + chr2R_5_16980001 chr2R_16980001 RAL-491 514 chr2R 17074141 17074170 chr2R 17074238 17074246 7 93 2.5 4.0 3.2 1.7 105 chr2R 17074141 intron CG30460 - chr2R 17074194 intron CG30460 - chr2R 17074246 intron CG30460 - chr2R_7_17070001 chr2R_17070001 RAL-491 515 chr2R 17383952 17383985 chr2R 17384040 17384062 11 86 3.5 2.5 3.0 2.8 110 chr2R 17383952 intergenic not near genes chr2R 17384007 intergenic not near genes chr2R 17384062 intergenic not near genes chr2R_11_17380001 chr2R_17380001 RAL-491 516 chr2R 17395283 17395317 chr2R 17395361 17395390 12 76 2.5 2.0 2.2 3.8 107 chr2R 17395283 intron Sip1 + chr2R 17395336 intron Sip1 + chr2R 17395390 intron Sip1 + chr2R_12_17395001 chr2R_17395001 RAL-491 517 chr2R 17459005 17459039 chr2R 17459090 17459124 9 83 5.0 2.0 3.5 2.0 119 chr2R 17459005 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_9_17455001 chr2R_17455001 RAL-491 518 chr2R 17459188 17459195 chr2R 17459407 17459429 7 225 5.0 2.0 3.5 1.6 241 chr2R 17459188 intron CG14478 + chr2R 17459308 intron CG14478 + chr2R 17459429 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-491 519 chr2R 17485915 17485944 chr2R 17490677 17490703 F-element 6 4762 4.0 0.0 2.0 2.0 4788 chr2R 17485915 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488309 intron NT5E-2 + chr2R 17490703 intron NT5E-2 + chr2R_6_17485001 chr2R_17485001 RAL-491 520 chr2R 17500674 17500694 chr2R 17500743 17500765 5 71 0.0 3.0 1.5 2.0 91 chr2R 17500674 intergenic not near genes chr2R 17500720 intergenic not near genes chr2R 17500765 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-491 521 chr2R 17519241 17519257 chr2R 17519307 17519334 4 72 3.0 3.0 3.0 1.0 93 chr2R 17519241 3` UTR Patronin - chr2R 17519288 3` UTR Patronin - chr2R 17519334 3` UTR Patronin - chr2R_4_17515001 chr2R_17515001 RAL-491 522 chr2R 17629607 17629622 chr2R 17629686 17629700 6 78 2.0 2.0 2.0 2.0 93 chr2R 17629607 intron,intron CG10936 -,rhi - chr2R 17629654 intron,intron CG10936 -,rhi - chr2R 17629700 intron,intron CG10936 -,rhi - chr2R_6_17625001 chr2R_17625001 RAL-491 523 chr2R 17709982 17710114 chr2R 17710073 17710192 9 81 0.5 1.5 1.0 4.5 210 chr2R 17709982 intron CG6424 - chr2R 17710087 intron CG6424 - chr2R 17710192 intron CG6424 - chr2R_9_17710001 chr2R_17710001 RAL-491 524 chr2R 17764433 17764454 chr2R 17764530 17764557 10 100 3.5 4.0 3.8 2.1 124 chr2R 17764433 3` UTR CG5009 + chr2R 17764495 3` UTR CG5009 + chr2R 17764557 intergenic CG5009 +,OstDelta - chr2R_10_17760001 chr2R_17760001 RAL-491 525 chr2R 17784028 17784053 chr2R 17784267 17784277 pogo 7 237 2.0 2.0 2.0 2.3 249 chr2R 17784028 intergenic mir-31a - chr2R 17784152 intergenic mir-31a - chr2R 17784277 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-491 526 chr2R 17997070 17997097 chr2R 17997178 17997187 10 105 20.0 7.5 13.8 0.7 117 chr2R 17997070 intron dpr13 - chr2R 17997128 intron dpr13 - chr2R 17997187 intron dpr13 - chr2R_10_17995001 chr2R_17995001 RAL-491 527 chr2R 18358393 18358422 chr2R 18372605 18372634 roo 8 14210 2.5 3.5 3.0 2.0 14241 chr2R 18358393 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-491 528 chr2R 18486846 18486875 chr2R 18487108 18487137 12 257 2.0 4.0 3.0 3.0 291 chr2R 18486846 intron CG30116 - chr2R 18486992 intron CG30116 - chr2R 18487137 intron CG30116 - chr2R_12_18485001 chr2R_18485001 RAL-491 529 chr2R 18509929 18509958 chr2R 18510229 18510243 7 293 0.0 4.0 2.0 2.3 314 chr2R 18509929 intergenic not near genes chr2R 18510086 intergenic not near genes chr2R 18510243 intergenic not near genes chr2R_7_18510001 chr2R_18510001 RAL-491 530 chr2R 18575813 18575830 chr2R 18581995 18582018 3S18 5 6185 0.5 2.5 1.5 2.0 6205 chr2R 18575813 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-491 531 chr2R 18590872 18590901 chr2R 18600017 18600053 roo 15 9147 3.5 2.5 3.0 3.8 9181 chr2R 18590872 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_15_18595001 chr2R_18595001 RAL-491 532 chr2R 18646423 18646437 chr2R 18646568 18646582 5 143 2.0 6.5 4.2 1.0 159 chr2R 18646423 intron SP2637 - chr2R 18646502 intron SP2637 - chr2R 18646582 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-491 533 chr2R 18711844 18711856 chr2R 18711922 18711934 4 78 4.5 2.0 3.2 1.0 90 chr2R 18711844 5` UTR pncr016:2R + chr2R 18711889 5` UTR pncr016:2R + chr2R 18711934 5` UTR pncr016:2R + chr2R_4_18710001 chr2R_18710001 RAL-491 534 chr2R 18713235 18713273 chr2R 18713312 18713350 12 75 2.5 5.0 3.8 2.5 115 chr2R 18713235 intergenic not near genes chr2R 18713292 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_12_18710001 chr2R_18710001 RAL-491 535 chr2R 18716125 18716145 chr2R 18716562 18716572 5 438 4.0 2.5 3.2 1.2 447 chr2R 18716125 intergenic not near genes chr2R 18716348 intergenic not near genes chr2R 18716572 intergenic not near genes chr2R_5_18715001 chr2R_18715001 RAL-491 536 chr2R 18732349 18732380 chr2R 18732483 18732514 6 131 2.5 1.0 1.8 2.1 165 chr2R 18732349 intron Hs3st-A + chr2R 18732432 intron Hs3st-A + chr2R 18732514 intron Hs3st-A + chr2R_6_18730001 chr2R_18730001 RAL-491 537 chr2R 18818514 18818534 chr2R 18818860 18818886 11 350 2.0 3.0 2.5 3.1 372 chr2R 18818514 intergenic not near genes chr2R 18818700 intergenic not near genes chr2R 18818886 intergenic not near genes chr2R_11_18815001 chr2R_18815001 RAL-491 538 chr2R 18863323 18863330 chr2R 18863405 18863412 4 82 4.5 4.0 4.2 0.8 89 chr2R 18863323 intergenic CG43069 + chr2R 18863368 intergenic CG43069 + chr2R 18863412 intergenic CG43069 +,CG43070 + chr2R_4_18860001 chr2R_18860001 RAL-491 539 chr2R 18871645 18871677 chr2R 18871730 18871759 13 84 5.0 0.0 2.5 3.7 114 chr2R 18871645 intergenic not near genes chr2R 18871702 intergenic not near genes chr2R 18871759 intergenic not near genes chr2R_13_18870001 chr2R_18870001 RAL-491 540 chr2R 18926511 18926529 chr2R 18926598 18926616 7 87 0.5 1.0 0.8 3.9 105 chr2R 18926511 intron sano + chr2R 18926564 intron sano + chr2R 18926616 intron sano + chr2R_7_18925001 chr2R_18925001 RAL-491 541 chr2R 18953162 18953192 chr2R 18953248 18953279 4 86 1.0 3.5 2.2 1.2 117 chr2R 18953162 intron sano + chr2R 18953220 intron sano + chr2R 18953279 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-491 542 chr2R 18964922 18964953 chr2R 18964997 18965026 6 74 3.0 2.5 2.8 1.6 104 chr2R 18964922 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965026 intergenic not near genes chr2R_6_18960001 chr2R_18960001 RAL-491 543 chr2R 19096991 19097020 chr2R 19097071 19097100 11 80 5.0 0.0 2.5 3.1 109 chr2R 19096991 intron 5-HT1A + chr2R 19097046 intron 5-HT1A + chr2R 19097100 intron 5-HT1A + chr2R_11_19095001 chr2R_19095001 RAL-491 544 chr2R 19234848 19234866 chr2R 19234929 19234947 8 80 2.0 1.5 1.8 2.9 99 chr2R 19234848 intron cora + chr2R 19234898 intron cora + chr2R 19234947 intron cora + chr2R_8_19230001 chr2R_19230001 RAL-491 545 chr2R 19351723 19351726 chr2R 19352539 19352559 4 826 3.5 1.0 2.2 1.2 836 chr2R 19351723 intron Rgk1 - chr2R 19352141 intron Rgk1 - chr2R 19352559 intron Rgk1 - chr2R_4_19350001 chr2R_19350001 RAL-491 546 chr2R 19776595 19776630 chr2R 19779918 19779937 jockey 9 3319 1.5 1.0 1.2 4.1 3342 chr2R 19776595 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779937 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-491 547 chr2R 19914843 19914877 chr2R 19922255 19922286 mdg1 9 7410 1.0 2.5 1.8 3.2 7443 chr2R 19914843 intergenic not near genes chr2R 19918564 intergenic not near genes chr2R 19922286 intergenic not near genes chr2R_9_19915001 chr2R_19915001 RAL-491 548 chr2R 19957445 19957464 chr2R 19962630 19962634 copia 6 5188 0.5 3.5 2.0 2.0 5189 chr2R 19957445 intergenic CG44623 + chr2R 19960040 intergenic not near genes chr2R 19962634 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-491 549 chr2R 20069242 20069268 chr2R 20071872 20071898 opus 7 2627 2.5 2.5 2.5 2.0 2656 chr2R 20069242 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071898 intergenic not near genes chr2R_7_20070001 chr2R_20070001 RAL-491 550 chr2R 20080600 20080624 chr2R 20080677 20080701 8 75 0.0 2.5 1.2 3.6 101 chr2R 20080600 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080701 intergenic not near genes chr2R_8_20080001 chr2R_20080001 RAL-491 551 chr2R 20265460 20265492 chr2R 20276768 20276800 12 11309 27.5 27.5 27.5 0.4 11340 chr2R 20265460 exon CG8908 + chr2R 20271130 intergenic CG8908 + chr2R 20276800 exon CG9143 - chr2R_12_20270001 chr2R_20270001 RAL-491 552 chr2R 20367374 20367407 chr2R 20367744 20367773 15 365 2.0 1.0 1.5 6.0 399 chr2R 20367374 intergenic not near genes chr2R 20367574 intergenic not near genes chr2R 20367773 intergenic not near genes chr2R_15_20365001 chr2R_20365001 RAL-491 553 chr2R 20405937 20405967 chr2R 20406040 20406061 6 92 3.5 3.0 3.2 1.4 124 chr2R 20405937 intergenic not near genes chr2R 20405999 intergenic not near genes chr2R 20406061 intergenic not near genes chr2R_6_20405001 chr2R_20405001 RAL-491 554 chr2R 20424439 20424451 chr2R 20424501 20424526 5 67 4.0 3.0 3.5 1.1 87 chr2R 20424439 5` UTR CG12484 + chr2R 20424482 5` UTR CG12484 + chr2R 20424526 5` UTR CG12484 + chr2R_5_20420001 chr2R_20420001 RAL-491 555 chr2R 20434098 20434103 chr2R 20434184 20434189 4 86 0.0 2.5 1.2 1.8 91 chr2R 20434098 intron CG12484 + chr2R 20434144 intron CG12484 + chr2R 20434189 intron CG12484 + chr2R_4_20430001 chr2R_20430001 RAL-491 556 chr2R 20515233 20515249 chr2R 20515301 20515321 4 73 2.5 1.0 1.8 1.4 88 chr2R 20515233 intergenic not near genes chr2R 20515277 intergenic not near genes chr2R 20515321 intergenic not near genes chr2R_4_20515001 chr2R_20515001 RAL-491 557 chr2R 20523059 20523071 chr2R 20523154 20523167 5 96 2.0 4.0 3.0 1.2 108 chr2R 20523059 intergenic not near genes chr2R 20523113 intergenic not near genes chr2R 20523167 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-491 558 chr2R 20572571 20572578 chr2R 20572661 20572668 6 90 4.5 1.0 2.8 1.6 97 chr2R 20572571 intron qsm - chr2R 20572620 intron qsm - chr2R 20572668 intron qsm - chr2R_6_20570001 chr2R_20570001 RAL-491 559 chr2R 20600025 20600042 chr2R 20600217 20600237 5 194 4.0 0.5 2.2 1.6 212 chr2R 20600025 intron bl + chr2R 20600131 intron bl + chr2R 20600237 intron bl + chr2R_5_20600001 chr2R_20600001 RAL-491 560 chr2R 20601724 20601755 chr2R 20601803 20601840 14 81 1.5 2.5 2.0 4.7 116 chr2R 20601724 intron bl + chr2R 20601782 intron bl + chr2R 20601840 intron bl + chr2R_14_20600001 chr2R_20600001 RAL-491 561 chr2R 21106933 21106962 chr2R 21107009 21107036 8 73 2.0 3.0 2.5 2.3 103 chr2R 21106933 intron ktub + chr2R 21106984 intron ktub + chr2R 21107036 intron ktub + chr2R_8_21105001 chr2R_21105001 RAL-491 562 chr2R 21322955 21322966 chr2R 21323039 21323050 4 84 1.5 7.5 4.5 0.7 95 chr2R 21322955 5` UTR CG30394 - chr2R 21323002 5` UTR CG30394 - chr2R 21323050 5` UTR CG30394 - chr2R_4_21320001 chr2R_21320001 RAL-491 563 chr2R 21322967 21322973 chr2R 21323035 21323057 4 76 1.0 6.5 3.8 0.8 90 chr2R 21322967 5` UTR CG30394 - chr2R 21323012 5` UTR CG30394 - chr2R 21323057 5` UTR CG30394 - chr2R_4_21320001 chr2R_21320001 RAL-491 564 chr2R 21322974 21322975 chr2R 21323023 21323049 6 61 1.0 4.0 2.5 1.7 75 chr2R 21322974 5` UTR CG30394 - chr2R 21323012 5` UTR CG30394 - chr2R 21323049 5` UTR CG30394 - chr2R_6_21320001 chr2R_21320001 RAL-491 565 chr2R 21346627 21346631 chr2R 21346721 21346723 5 94 3.0 2.0 2.5 1.4 96 chr2R 21346627 intergenic CG9822 - chr2R 21346675 intergenic CG9822 - chr2R 21346723 intergenic CG9822 - chr2R_5_21345001 chr2R_21345001 RAL-491 566 chr2R 21370519 21370536 chr2R 21370625 21370643 8 107 4.5 1.0 2.8 2.1 124 chr2R 21370519 intron cv-2 - chr2R 21370581 intron cv-2 - chr2R 21370643 intron cv-2 - chr2R_8_21370001 chr2R_21370001 RAL-491 567 chr2R 21414196 21414209 chr2R 21414354 21414365 4 158 0.0 2.0 1.0 2.0 169 chr2R 21414196 intron Sdc - chr2R 21414280 intron Sdc - chr2R 21414365 intron Sdc - chr2R_4_21410001 chr2R_21410001 RAL-491 568 chr2R 21738291 21738305 chr2R 21747435 21747445 roo 5 9150 0.5 3.0 1.8 1.8 9154 chr2R 21738291 intergenic not near genes chr2R 21742868 intergenic not near genes chr2R 21747445 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-491 569 chr2R 21753100 21753107 chr2R 21753569 21753592 roo 5 479 3.5 3.5 3.5 1.1 492 chr2R 21753100 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753592 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-491 570 chr2R 21809522 21809552 chr2R 21817762 21817783 roo 13 8235 3.5 4.5 4.0 2.6 8261 chr2R 21809522 intergenic not near genes chr2R 21813652 intergenic not near genes chr2R 21817783 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-491 571 chr2R 21818883 21818911 chr2R 21818967 21818998 7 85 2.0 0.0 1.0 3.5 115 chr2R 21818883 intergenic not near genes chr2R 21818940 intergenic not near genes chr2R 21818998 intergenic not near genes chr2R_7_21815001 chr2R_21815001 RAL-491 572 chr2R 21886130 21886158 chr2R 21886209 21886235 11 77 3.5 0.0 1.8 3.9 105 chr2R 21886130 intron Fili + chr2R 21886182 intron Fili + chr2R 21886235 intron Fili + chr2R_11_21885001 chr2R_21885001 RAL-491 573 chr2R 21906272 21906303 chr2R 21906372 21906403 5 100 0.5 3.0 1.8 1.8 131 chr2R 21906272 intron Fili + chr2R 21906338 intron Fili + chr2R 21906403 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-491 574 chr2R 21946774 21946801 chr2R 21946870 21946897 8 95 4.0 2.5 3.2 1.9 123 chr2R 21946774 intergenic not near genes chr2R 21946836 intergenic not near genes chr2R 21946897 intergenic not near genes chr2R_8_21945001 chr2R_21945001 RAL-491 575 chr2R 21963196 21963210 chr2R 21963281 21963295 6 85 2.5 1.0 1.8 2.1 99 chr2R 21963196 intergenic not near genes chr2R 21963246 intergenic not near genes chr2R 21963295 intergenic not near genes chr2R_6_21960001 chr2R_21960001 RAL-491 576 chr2R 21992419 21992428 chr2R 21992494 21992505 5 76 0.5 2.0 1.2 2.3 86 chr2R 21992419 intron CG34370 - chr2R 21992462 intron CG34370 - chr2R 21992505 intron CG34370 - chr2R_5_21990001 chr2R_21990001 RAL-491 577 chr2R 22020604 22020616 chr2R 22020667 22020683 4 68 2.0 3.5 2.8 1.1 79 chr2R 22020604 intron CG34370 - chr2R 22020644 intron CG34370 - chr2R 22020683 intron CG34370 - chr2R_4_22020001 chr2R_22020001 RAL-491 578 chr2R 22072681 22072713 chr2R 22072766 22072795 8 83 2.5 3.5 3.0 2.0 114 chr2R 22072681 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-491 579 chr2R 22185680 22185707 chr2R 22185779 22185806 8 98 0.0 1.5 0.8 4.4 126 chr2R 22185680 3` UTR MED16 + chr2R 22185743 3` UTR MED16 + chr2R 22185806 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-491 580 chr2R 22259614 22259629 chr2R 22259689 22259710 6 78 10.0 3.0 6.5 0.8 96 chr2R 22259614 intron dve + chr2R 22259662 intron dve + chr2R 22259710 intron dve + chr2R_6_22255001 chr2R_22255001 RAL-491 581 chr2R 22290078 22290104 chr2R 22290162 22290188 6 84 1.5 1.0 1.2 2.7 110 chr2R 22290078 intergenic not near genes chr2R 22290133 intergenic not near genes chr2R 22290188 intergenic not near genes chr2R_6_22290001 chr2R_22290001 RAL-491 582 chr2R 22292072 22292106 chr2R 22292158 22292192 9 84 2.0 2.5 2.2 2.8 120 chr2R 22292072 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292192 5` UTR CR43422 + chr2R_9_22290001 chr2R_22290001 RAL-491 583 chr2R 22349694 22349721 chr2R 22351478 22351504 jockey 6 1780 4.5 4.5 4.5 1.1 1810 chr2R 22349694 intron Liprin-gamma - chr2R 22350599 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-491 584 chr2R 22360386 22360408 chr2R 22360817 22360825 jockey 5 427 4.5 4.0 4.2 1.0 439 chr2R 22360386 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360825 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-491 585 chr2R 22503868 22503896 chr2R 22503963 22503981 6 92 0.0 1.0 0.5 4.0 113 chr2R 22503868 intron px - chr2R 22503924 intron px - chr2R 22503981 intron px - chr2R_6_22500001 chr2R_22500001 RAL-491 586 chr2R 22506721 22506737 chr2R 22506799 22506815 7 78 3.0 0.5 1.8 2.5 94 chr2R 22506721 intron px - chr2R 22506768 intron px - chr2R 22506815 intron px - chr2R_7_22505001 chr2R_22505001 RAL-491 587 chr2R 22525756 22525772 chr2R 22529311 22529327 jockey 5 3554 4.0 2.0 3.0 1.2 3571 chr2R 22525756 intron px - chr2R 22527542 intron px - chr2R 22529327 intron px - chr2R_5_22525001 chr2R_22525001 RAL-491 588 chr2R 22525773 22525786 chr2R 22529307 22529324 jockey 5 3542 1.5 2.0 1.8 1.8 3551 chr2R 22525773 intron px - chr2R 22527548 intron px - chr2R 22529324 intron px - chr2R_5_22525001 chr2R_22525001 RAL-491 589 chr2R 22574171 22574183 chr2R 22574250 22574263 5 79 1.0 6.0 3.5 1.1 92 chr2R 22574171 intron dnr1 - chr2R 22574217 intron dnr1 - chr2R 22574263 intron dnr1 - chr2R_5_22570001 chr2R_22570001 RAL-491 590 chr2R 22623461 22623486 chr2R 22623591 22623608 7 129 2.0 4.0 3.0 1.8 147 chr2R 22623461 intron CG33143 + chr2R 22623534 intron CG33143 + chr2R 22623608 intron CG33143 + chr2R_7_22620001 chr2R_22620001 RAL-491 591 chr2R 22626936 22626963 chr2R 22627013 22627040 5 75 1.0 3.0 2.0 1.7 104 chr2R 22626936 intron CG33143 + chr2R 22626988 intron CG33143 + chr2R 22627040 intron CG33143 + chr2R_5_22625001 chr2R_22625001 RAL-491 592 chr2R 22641706 22641720 chr2R 22641796 22641809 4 88 1.0 4.0 2.5 1.1 103 chr2R 22641706 intergenic Ugt58Fa -,RpS24 - chr2R 22641758 intergenic Ugt58Fa -,RpS24 - chr2R 22641809 3` UTR Ugt58Fa - chr2R_4_22640001 chr2R_22640001 RAL-491 593 chr2R 22756553 22756585 chr2R 22756630 22756662 12 73 4.0 4.0 4.0 2.4 109 chr2R 22756553 intron,intron CG42260 -,CR30267 + chr2R 22756608 intron,intron CG42260 -,CR30267 + chr2R 22756662 intron,intron CG42260 -,CR30267 + chr2R_12_22755001 chr2R_22755001 RAL-491 594 chr2R 22774969 22775001 chr2R 22775387 22775420 jockey 12 415 1.5 3.0 2.2 3.8 451 chr2R 22774969 intron CG42260 - chr2R 22775194 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-491 595 chr2R 22941819 22941847 chr2R 22941898 22941926 4 78 1.5 0.5 1.0 2.0 107 chr2R 22941819 intergenic CG42694 + chr2R 22941872 intergenic CG42694 + chr2R 22941926 5` UTR CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-491 596 chr2R 22968146 22968167 chr2R 22968235 22968246 7 87 2.5 3.5 3.0 1.8 100 chr2R 22968146 intergenic not near genes chr2R 22968196 intergenic not near genes chr2R 22968246 intergenic not near genes chr2R_7_22965001 chr2R_22965001 RAL-491 597 chr2R 23000156 23000169 chr2R 23000236 23000249 4 78 0.5 2.5 1.5 1.6 93 chr2R 23000156 intron twi + chr2R 23000202 intron twi + chr2R 23000249 intron twi + chr2R_4_23000001 chr2R_23000001 RAL-491 598 chr2R 23052661 23052689 chr2R 23052729 23052754 6 73 1.5 2.0 1.8 2.1 93 chr2R 23052661 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052754 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-491 599 chr2R 23175042 23175065 chr2R 23175116 23175127 4 68 3.5 3.5 3.5 0.9 85 chr2R 23175042 intron CG34371 - chr2R 23175084 intron CG34371 - chr2R 23175127 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-491 600 chr2R 23186575 23186597 chr2R 23186652 23186675 7 77 5.0 4.5 4.8 1.2 100 chr2R 23186575 intron CG34371 - chr2R 23186625 intron CG34371 - chr2R 23186675 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-491 601 chr2R 23219008 23219023 chr2R 23219246 23219259 6 238 1.5 0.0 0.8 3.3 251 chr2R 23219008 intergenic not near genes chr2R 23219134 intergenic not near genes chr2R 23219259 intergenic not near genes chr2R_6_23215001 chr2R_23215001 RAL-491 602 chr2R 23423738 23423774 chr2R 23423896 23423932 12 155 1.0 2.0 1.5 4.8 194 chr2R 23423738 intron CG9815 - chr2R 23423835 intron CG9815 - chr2R 23423932 intron CG9815 - chr2R_12_23420001 chr2R_23420001 RAL-491 603 chr2R 23589182 23589194 chr2R 23589259 23589271 4 76 5.0 5.5 5.2 0.6 89 chr2R 23589182 intron apt + chr2R 23589226 intron apt + chr2R 23589271 intron apt + chr2R_4_23585001 chr2R_23585001 RAL-491 604 chr2R 23705626 23705631 chr2R 23710904 23710936 5 5287 18.5 20.0 19.2 0.2 5310 chr2R 23705626 exon l(2)not - chr2R 23708281 intron,exon l(2)not -,l(2)tid + chr2R 23710936 intergenic not near genes chr2R_5_23705001 chr2R_23705001 RAL-491 605 chr2R 23730235 23730255 chr2R 24658496 24658498 4 928254 10.0 14.0 12.0 0.3 928263 chr2R 23730235 intron Sesn + chr2R 24194366 exon ocm + chr2R 24658498 intergenic not near genes chr2R_4_24190001 chr2R_24190001 RAL-491 606 chr2R 23914305 23914332 chr2R 23921923 23921947 412 11 7619 3.0 2.5 2.8 2.9 7642 chr2R 23914305 exon kcc + chr2R 23918126 intron kcc + chr2R 23921947 intron kcc + chr2R_11_23915001 chr2R_23915001 RAL-491 607 chr2R 23986518 23986542 chr2R 23986598 23986622 5 77 2.5 1.5 2.0 1.7 104 chr2R 23986518 intron Phm - chr2R 23986570 intron Phm - chr2R 23986622 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-491 608 chr2R 23993914 23993944 chr2R 23993994 23994024 13 79 2.5 4.0 3.2 3.1 110 chr2R 23993914 intron CG3860 - chr2R 23993969 intron CG3860 - chr2R 23994024 intron CG3860 - chr2R_13_23990001 chr2R_23990001 RAL-491 609 chr2R 24031382 24031412 chr2R 24031466 24031487 12 80 2.0 5.5 3.8 2.5 105 chr2R 24031382 5` UTR CG30172 - chr2R 24031434 intergenic CG30172 -,Chi - chr2R 24031487 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-491 610 chr2R 24045874 24045905 chr2R 24045958 24045989 13 82 2.0 1.5 1.8 4.6 115 chr2R 24045874 intron tsr - chr2R 24045932 intron tsr - chr2R 24045989 intron tsr - chr2R_13_24045001 chr2R_24045001 RAL-491 611 chr2R 24138315 24138335 chr2R 24138474 24138494 5 157 4.5 6.0 5.2 0.8 179 chr2R 24138315 intergenic CG4065 -,CR44826 + chr2R 24138404 intergenic CR44826 +,CG4065 - chr2R 24138494 intergenic CR44826 +,CG4065 - chr2R_5_24135001 chr2R_24135001 RAL-491 612 chr2R 24177243 24177262 chr2R 24184720 24184747 412 4 7483 3.5 2.0 2.8 1.1 7504 chr2R 24177243 3` UTR Nop60B + chr2R 24180995 intron Nop60B + chr2R 24184747 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-491 613 chr2R 24323620 24323650 chr2R 24323711 24323743 10 91 2.0 2.5 2.2 3.1 123 chr2R 24323620 intergenic not near genes chr2R 24323682 intergenic not near genes chr2R 24323743 intergenic not near genes chr2R_10_24320001 chr2R_24320001 RAL-491 614 chr2R 24353436 24353457 chr2R 24361798 24361819 roo 10 8362 4.0 5.5 4.8 1.7 8383 chr2R 24353436 intron,intron bs +,CR44811 - chr2R 24357628 intron,intron bs +,CR44811 - chr2R 24361819 intron,intron bs +,CR44811 - chr2R_10_24355001 chr2R_24355001 RAL-491 615 chr2R 24647591 24647618 chr2R 24655148 24655167 412 8 7552 3.0 2.0 2.5 2.3 7576 chr2R 24647591 intergenic not near genes chr2R 24651379 intergenic not near genes chr2R 24655167 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-491 616 chr2R 24703168 24703191 chr2R 24703262 24703273 5 82 1.0 4.5 2.8 1.3 105 chr2R 24703168 intron Mid1 - chr2R 24703220 intron Mid1 - chr2R 24703273 intron Mid1 - chr2R_5_24700001 chr2R_24700001 RAL-491 617 chr2R 24727885 24727915 chr2R 24735393 24735413 mdg1 7 7502 2.5 4.0 3.2 1.7 7528 chr2R 24727885 intron Mid1 - chr2R 24731649 intron Mid1 - chr2R 24735413 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-491 618 chr2R 24747249 24747278 chr2R 24747329 24747338 10 76 0.5 5.5 3.0 2.5 89 chr2R 24747249 intron CG30421 + chr2R 24747294 intron CG30421 + chr2R 24747338 intron CG30421 + chr2R_10_24745001 chr2R_24745001 RAL-491 619 chr2R 24763639 24763644 chr2R 24765586 24765620 G2 4 1959 1.5 3.0 2.2 1.2 1981 chr2R 24763639 exon CG3894 + chr2R 24764630 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-491 620 chr2R 24859848 24859866 chr2R 24859929 24859932 6 81 0.5 1.5 1.0 3.0 84 chr2R 24859848 5` UTR CR44829 + chr2R 24859890 5` UTR CR44829 + chr2R 24859932 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-491 621 chr2R 25017758 25017777 chr2R 25017841 25017860 8 81 10.5 9.5 10.0 0.7 102 chr2R 25017758 intron uzip + chr2R 25017809 intron uzip + chr2R 25017860 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-491 622 chr2R 25022641 25022670 chr2R 25022725 25022754 4 80 1.5 0.5 1.0 2.0 113 chr2R 25022641 intron uzip + chr2R 25022698 intron uzip + chr2R 25022754 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-491 623 chr2R 25081623 25081637 chr2R 25082702 25082709 5 1079 4.0 2.5 3.2 1.2 1086 chr2R 25081623 intron gol - chr2R 25082166 intron gol - chr2R 25082709 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-491 624 chr2R 25101281 25101308 chr2R 25101383 25101410 5 102 1.5 3.5 2.5 1.4 129 chr2R 25101281 intron lov - chr2R 25101346 intron lov - chr2R 25101410 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-491 625 chr3L 48753 48787 chr3L 48838 48853 9 79 1.5 2.5 2.0 3.0 100 chr3L 48753 intergenic not near genes chr3L 48803 intergenic not near genes chr3L 48853 intergenic not near genes chr3L_9_45001 chr3L_45001 RAL-491 626 chr3L 68985 69011 chr3L 69071 69098 12 86 3.0 3.0 3.0 3.0 113 chr3L 68985 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_12_65001 chr3L_65001 RAL-491 627 chr3L 71945 71962 chr3L 72021 72035 6 79 5.5 5.5 5.5 0.9 90 chr3L 71945 intergenic CR43988 - chr3L 71990 intergenic CR43988 - chr3L 72035 intergenic CR43988 - chr3L_6_70001 chr3L_70001 RAL-491 628 chr3L 107883 107906 chr3L 108174 108197 10 291 4.5 2.0 3.2 2.4 314 chr3L 107883 intergenic not near genes chr3L 108040 intergenic not near genes chr3L 108197 intergenic not near genes chr3L_10_105001 chr3L_105001 RAL-491 629 chr3L 122119 122125 chr3L 122198 122204 4 79 4.0 0.0 2.0 1.3 85 chr3L 122119 intergenic not near genes chr3L 122162 intergenic not near genes chr3L 122204 intergenic not near genes chr3L_4_120001 chr3L_120001 RAL-491 630 chr3L 164789 164817 chr3L 164964 164990 6 174 30.0 22.0 26.0 0.2 201 chr3L 164789 intron p130CAS + chr3L 164890 intron p130CAS + chr3L 164990 intron p130CAS + chr3L_6_160001 chr3L_160001 RAL-491 631 chr3L 402692 402712 chr3L 409745 409746 297 4 7048 4.0 4.5 4.2 0.8 7054 chr3L 402692 intergenic not near genes chr3L 406219 intergenic not near genes chr3L 409746 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-491 632 chr3L 495412 495427 chr3L 495503 495521 8 101 1.0 5.0 3.0 2.0 109 chr3L 495412 intron klar - chr3L 495466 intron klar - chr3L 495521 intron klar - chr3L_8_495001 chr3L_495001 RAL-491 633 chr3L 642475 642499 chr3L 642561 642590 8 88 2.5 3.0 2.8 2.1 115 chr3L 642475 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642590 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-491 634 chr3L 665818 665841 chr3L 666084 666108 9 264 2.0 4.0 3.0 2.2 290 chr3L 665818 intergenic not near genes chr3L 665963 intergenic not near genes chr3L 666108 intergenic not near genes chr3L_9_665001 chr3L_665001 RAL-491 635 chr3L 668815 668824 chr3L 668921 668930 4 106 5.5 2.5 4.0 0.8 115 chr3L 668815 intergenic not near genes chr3L 668872 intergenic not near genes chr3L 668930 intergenic not near genes chr3L_4_665001 chr3L_665001 RAL-491 636 chr3L 668830 668845 chr3L 668920 668950 7 94 4.0 2.5 3.2 1.7 120 chr3L 668830 intergenic not near genes chr3L 668890 intergenic not near genes chr3L 668950 intergenic not near genes chr3L_7_665001 chr3L_665001 RAL-491 637 chr3L 695170 695178 chr3L 695402 695410 5 232 4.5 0.5 2.5 1.4 240 chr3L 695170 intron CG13894 - chr3L 695290 intron CG13894 - chr3L 695410 intron CG13894 - chr3L_5_695001 chr3L_695001 RAL-491 638 chr3L 702164 702172 chr3L 702243 702254 5 80 4.5 1.5 3.0 1.2 90 chr3L 702164 intergenic not near genes chr3L 702209 intergenic not near genes chr3L 702254 intergenic not near genes chr3L_5_700001 chr3L_700001 RAL-491 639 chr3L 705900 705924 chr3L 705996 706014 6 94 2.5 3.5 3.0 1.5 114 chr3L 705900 intergenic CG13895 -,CR44514 + chr3L 705957 3` UTR CG13895 - chr3L 706014 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-491 640 chr3L 732823 732845 chr3L 733045 733067 8 220 1.0 2.0 1.5 3.2 244 chr3L 732823 intergenic not near genes chr3L 732945 intergenic not near genes chr3L 733067 intergenic not near genes chr3L_8_730001 chr3L_730001 RAL-491 641 chr3L 746497 746524 chr3L 746580 746609 7 85 1.5 1.5 1.5 2.8 112 chr3L 746497 intron hng3 - chr3L 746553 intron hng3 - chr3L 746609 intron hng3 - chr3L_7_745001 chr3L_745001 RAL-491 642 chr3L 770048 770077 chr3L 770126 770155 6 76 3.5 1.5 2.5 1.7 107 chr3L 770048 intergenic not near genes chr3L 770102 intergenic not near genes chr3L 770155 intergenic not near genes chr3L_6_770001 chr3L_770001 RAL-491 643 chr3L 789914 789935 chr3L 790399 790419 roo 5 484 2.5 3.0 2.8 1.3 505 chr3L 789914 intergenic not near genes chr3L 790166 intergenic not near genes chr3L 790419 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-491 644 chr3L 925179 925200 chr3L 932605 932619 mdg1 10 7423 5.5 3.5 4.5 1.8 7440 chr3L 925179 intron Glut1 + chr3L 928899 intron Glut1 + chr3L 932619 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-491 645 chr3L 933917 933939 chr3L 934018 934042 7 102 3.0 4.0 3.5 1.6 125 chr3L 933917 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934042 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-491 646 chr3L 939776 939802 chr3L 940897 940923 jockey 12 1120 4.0 7.0 5.5 1.8 1147 chr3L 939776 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-491 647 chr3L 943849 943878 chr3L 943930 943958 5 80 5.0 2.0 3.5 1.1 109 chr3L 943849 intron Glut1 + chr3L 943904 intron Glut1 + chr3L 943958 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-491 648 chr3L 1021381 1021406 chr3L 1021459 1021480 8 78 3.0 7.0 5.0 1.3 99 chr3L 1021381 intron trio - chr3L 1021430 intron trio - chr3L 1021480 intron trio - chr3L_8_1020001 chr3L_1020001 RAL-491 649 chr3L 1042970 1042982 chr3L 1043047 1043060 5 77 2.0 3.0 2.5 1.4 90 chr3L 1042970 intron bab1 - chr3L 1043015 intron bab1 - chr3L 1043060 intron bab1 - chr3L_5_1040001 chr3L_1040001 RAL-491 650 chr3L 1109636 1109666 chr3L 1109724 1109751 10 85 0.0 4.5 2.2 3.1 115 chr3L 1109636 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109751 intergenic not near genes chr3L_10_1105001 chr3L_1105001 RAL-491 651 chr3L 1143947 1143956 chr3L 1144038 1144051 5 94 0.0 4.0 2.0 1.7 104 chr3L 1143947 intron bab2 - chr3L 1143999 intron bab2 - chr3L 1144051 intron bab2 - chr3L_5_1140001 chr3L_1140001 RAL-491 652 chr3L 1145243 1145267 chr3L 1145322 1145325 5 74 1.5 0.0 0.8 2.8 82 chr3L 1145243 intron bab2 - chr3L 1145284 intron bab2 - chr3L 1145325 intron bab2 - chr3L_5_1145001 chr3L_1145001 RAL-491 653 chr3L 1154134 1154162 chr3L 1163284 1163305 roo 9 9144 2.0 2.5 2.2 2.8 9171 chr3L 1154134 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163305 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-491 654 chr3L 1167684 1167703 chr3L 1167754 1167756 5 70 3.0 4.5 3.8 1.0 72 chr3L 1167684 intron bab2 - chr3L 1167720 intron bab2 - chr3L 1167756 intron bab2 - chr3L_5_1165001 chr3L_1165001 RAL-491 655 chr3L 1219597 1219623 chr3L 1227330 1227345 412 4 7730 2.0 5.5 3.8 0.8 7748 chr3L 1219597 intron mwh + chr3L 1223471 intron mwh + chr3L 1227345 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-491 656 chr3L 1251832 1251852 chr3L 1251907 1251908 4 71 0.0 0.5 0.2 3.3 76 chr3L 1251832 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251870 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251908 intergenic CG9130 +,CG9133 +,CG9129 + chr3L_4_1250001 chr3L_1250001 RAL-491 657 chr3L 1310983 1311000 chr3L 1315850 1315872 11 4872 26.5 22.0 24.2 0.4 4889 chr3L 1310983 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_11_1310001 chr3L_1310001 RAL-491 658 chr3L 1321560 1321585 chr3L 1321759 1321772 4 194 2.5 1.0 1.8 1.4 212 chr3L 1321560 intron Myo61F + chr3L 1321666 intron Myo61F + chr3L 1321772 intron Myo61F + chr3L_4_1320001 chr3L_1320001 RAL-491 659 chr3L 1347159 1347192 chr3L 1347242 1347260 7 79 0.5 3.5 2.0 2.3 101 chr3L 1347159 intron Ptp61F - chr3L 1347210 intron Ptp61F - chr3L 1347260 intron Ptp61F - chr3L_7_1345001 chr3L_1345001 RAL-491 660 chr3L 1410427 1410444 chr3L 1410488 1410514 4 67 2.0 3.0 2.5 1.1 87 chr3L 1410427 intron Ptp61F - chr3L 1410470 intron Ptp61F - chr3L 1410514 intron Ptp61F - chr3L_4_1410001 chr3L_1410001 RAL-491 661 chr3L 1415789 1415808 chr3L 1415856 1415875 7 70 2.5 3.5 3.0 1.8 86 chr3L 1415789 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415875 intron Ptp61F - chr3L_7_1415001 chr3L_1415001 RAL-491 662 chr3L 1462865 1462874 chr3L 1462927 1462955 5 70 2.0 3.5 2.8 1.3 90 chr3L 1462865 intron Ptp61F - chr3L 1462910 intron Ptp61F - chr3L 1462955 intron Ptp61F - chr3L_5_1460001 chr3L_1460001 RAL-491 663 chr3L 1471827 1471845 chr3L 1471910 1471923 6 81 3.5 0.0 1.8 2.1 96 chr3L 1471827 intron,exon Ptp61F -,CG32319 - chr3L 1471875 intron,exon Ptp61F -,CG32319 - chr3L 1471923 intron,exon Ptp61F -,CG32319 - chr3L_6_1470001 chr3L_1470001 RAL-491 664 chr3L 1505995 1506032 chr3L 1513592 1513595 17.6 17 7594 2.5 2.5 2.5 4.9 7600 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509795 intron,intron Psa +,cue - chr3L 1513595 intron,intron Psa +,cue - chr3L_17_1505001 chr3L_1505001 RAL-491 665 chr3L 1639232 1639244 chr3L 1639399 1639424 4 175 0.0 2.5 1.2 1.8 192 chr3L 1639232 5` UTR metl - chr3L 1639328 intergenic metl -,Bgb + chr3L 1639424 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-491 666 chr3L 1848648 1848671 chr3L 1848724 1848749 9 72 1.5 4.0 2.8 2.4 101 chr3L 1848648 intergenic not near genes chr3L 1848698 intergenic not near genes chr3L 1848749 intergenic not near genes chr3L_9_1845001 chr3L_1845001 RAL-491 667 chr3L 1923007 1923042 chr3L 1923097 1923132 11 90 1.0 3.5 2.2 3.4 125 chr3L 1923007 intron Dbx + chr3L 1923070 intron Dbx + chr3L 1923132 intron Dbx + chr3L_11_1920001 chr3L_1920001 RAL-491 668 chr3L 1988857 1988875 chr3L 1989022 1989036 5 171 2.5 2.5 2.5 1.4 179 chr3L 1988857 intergenic not near genes chr3L 1988946 intergenic not near genes chr3L 1989036 intergenic not near genes chr3L_5_1985001 chr3L_1985001 RAL-491 669 chr3L 1991121 1991151 chr3L 1991198 1991229 13 75 1.0 2.5 1.8 4.6 108 chr3L 1991121 intergenic not near genes chr3L 1991175 intergenic not near genes chr3L 1991229 intergenic not near genes chr3L_13_1990001 chr3L_1990001 RAL-491 670 chr3L 2108252 2108281 chr3L 2113456 2113485 copia 4 5204 0.5 0.5 0.5 2.7 5233 chr3L 2108252 intron sls - chr3L 2110868 intron sls - chr3L 2113485 intron sls - chr3L_4_2110001 chr3L_2110001 RAL-491 671 chr3L 2279051 2279067 chr3L 2279194 2279202 7 143 0.0 4.0 2.0 2.3 151 chr3L 2279051 intergenic not near genes chr3L 2279126 intergenic not near genes chr3L 2279202 intergenic not near genes chr3L_7_2275001 chr3L_2275001 RAL-491 672 chr3L 2308020 2308023 chr3L 2308121 2308129 5 105 6.5 2.0 4.2 1.0 109 chr3L 2308020 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308129 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-491 673 chr3L 2321164 2321188 chr3L 2321241 2321242 5 65 3.0 4.5 3.8 1.0 78 chr3L 2321164 intergenic not near genes chr3L 2321203 intergenic not near genes chr3L 2321242 intergenic not near genes chr3L_5_2320001 chr3L_2320001 RAL-491 674 chr3L 2447510 2447533 chr3L 2456665 2456689 roo 9 9155 1.0 4.5 2.8 2.4 9179 chr3L 2447510 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-491 675 chr3L 2460651 2460676 chr3L 2460787 2460787 6 130 4.5 1.0 2.8 1.6 136 chr3L 2460651 intron CG45186 + chr3L 2460719 intron CG45186 + chr3L 2460787 intron CG45186 + chr3L_6_2460001 chr3L_2460001 RAL-491 676 chr3L 2533649 2533682 chr3L 2533731 2533742 7 76 6.0 4.0 5.0 1.2 93 chr3L 2533649 intron Spn - chr3L 2533696 intron Spn - chr3L 2533742 intron Spn - chr3L_7_2530001 chr3L_2530001 RAL-491 677 chr3L 2683942 2683979 chr3L 2684018 2684055 9 74 0.5 1.0 0.8 5.0 113 chr3L 2683942 intron Fife - chr3L 2683998 intron Fife - chr3L 2684055 intron Fife - chr3L_9_2680001 chr3L_2680001 RAL-491 678 chr3L 2751455 2751466 chr3L 2755749 2755761 F-element 4 4294 7.5 5.0 6.2 0.6 4306 chr3L 2751455 intron Mrtf - chr3L 2753608 intron Mrtf - chr3L 2755761 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-491 679 chr3L 2795724 2795749 chr3L 2795847 2795864 5 121 1.0 1.5 1.2 2.3 140 chr3L 2795724 intron CG43444 - chr3L 2795794 intron CG43444 - chr3L 2795864 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-491 680 chr3L 2882116 2882135 chr3L 2882192 2882211 5 75 4.0 2.5 3.2 1.2 95 chr3L 2882116 intergenic not near genes chr3L 2882164 intergenic not near genes chr3L 2882211 intergenic not near genes chr3L_5_2880001 chr3L_2880001 RAL-491 681 chr3L 2906060 2906097 chr3L 2906147 2906181 10 84 1.5 4.0 2.8 2.6 121 chr3L 2906060 intron Shab + chr3L 2906120 intron Shab + chr3L 2906181 intron Shab + chr3L_10_2905001 chr3L_2905001 RAL-491 682 chr3L 2927837 2927864 chr3L 2936114 2936123 Tirant 7 8273 2.5 0.0 1.2 3.2 8286 chr3L 2927837 intron Shab + chr3L 2931980 intron Shab + chr3L 2936123 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-491 683 chr3L 3128200 3128213 chr3L 3128286 3128299 6 85 1.0 2.0 1.5 2.4 99 chr3L 3128200 intergenic prominin-like - chr3L 3128250 intergenic not near genes chr3L 3128299 intergenic not near genes chr3L_6_3125001 chr3L_3125001 RAL-491 684 chr3L 3281446 3281459 chr3L 3281938 3281951 Doc 7 493 3.5 7.0 5.2 1.1 505 chr3L 3281446 intron CG12017 + chr3L 3281698 intron CG12017 + chr3L 3281951 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-491 685 chr3L 3281460 3281471 chr3L 3281932 3281966 Doc 5 490 2.5 5.5 4.0 1.0 506 chr3L 3281460 intron CG12017 + chr3L 3281713 intron CG12017 + chr3L 3281966 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-491 686 chr3L 3475085 3475099 chr3L 3475516 3475542 jockey 6 442 1.0 0.0 0.5 4.0 457 chr3L 3475085 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475542 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-491 687 chr3L 3585600 3585626 chr3L 3585688 3585717 7 87 0.0 3.0 1.5 2.8 117 chr3L 3585600 intron Eip63E + chr3L 3585658 intron Eip63E + chr3L 3585717 intron Eip63E + chr3L_7_3585001 chr3L_3585001 RAL-491 688 chr3L 3601296 3601313 chr3L 3606607 3606624 copia 8 5309 6.0 1.0 3.5 1.8 5328 chr3L 3601296 intron Eip63E + chr3L 3603960 intron Eip63E + chr3L 3606624 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-491 689 chr3L 3670566 3670598 chr3L 3670654 3670658 9 83 2.0 1.0 1.5 3.6 92 chr3L 3670566 intergenic not near genes chr3L 3670612 intergenic not near genes chr3L 3670658 intergenic not near genes chr3L_9_3670001 chr3L_3670001 RAL-491 690 chr3L 3766745 3766752 chr3L 3766831 3766837 4 86 1.0 0.0 0.5 2.7 92 chr3L 3766745 intron CG32264 - chr3L 3766791 intron CG32264 - chr3L 3766837 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-491 691 chr3L 3781765 3781800 chr3L 3781899 3781935 10 138 23.5 28.0 25.8 0.4 170 chr3L 3781765 intron CG32264 - chr3L 3781850 intron CG32264 - chr3L 3781935 intron CG32264 - chr3L_10_3780001 chr3L_3780001 RAL-491 692 chr3L 3798041 3798072 chr3L 3798120 3798150 5 79 1.5 3.0 2.2 1.6 109 chr3L 3798041 intron CG32264 - chr3L 3798096 intron CG32264 - chr3L 3798150 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-491 693 chr3L 3833740 3833768 chr3L 3833981 3834009 pogo 9 239 1.5 1.0 1.2 4.1 269 chr3L 3833740 intron enc + chr3L 3833874 intron enc + chr3L 3834009 intron enc + chr3L_9_3830001 chr3L_3830001 RAL-491 694 chr3L 3890970 3890991 chr3L 3891051 3891072 5 80 2.0 0.5 1.2 2.3 102 chr3L 3890970 intergenic not near genes chr3L 3891021 intergenic not near genes chr3L 3891072 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-491 695 chr3L 3921392 3921422 chr3L 3921656 3921685 7 263 2.0 3.5 2.8 1.8 293 chr3L 3921392 intron Eip63F-1 - chr3L 3921538 intron Eip63F-1 - chr3L 3921685 intron Eip63F-1 - chr3L_7_3920001 chr3L_3920001 RAL-491 696 chr3L 3935830 3935848 chr3L 3935908 3935923 4 77 2.0 1.5 1.8 1.4 93 chr3L 3935830 5` UTR Eip63F-2 + chr3L 3935876 5` UTR Eip63F-2 + chr3L 3935923 5` UTR Eip63F-2 + chr3L_4_3935001 chr3L_3935001 RAL-491 697 chr3L 4146813 4146836 chr3L 4146895 4146918 4 80 0.0 1.0 0.5 2.7 105 chr3L 4146813 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146918 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-491 698 chr3L 4213323 4213356 chr3L 4213405 4213439 8 83 3.0 2.0 2.5 2.3 116 chr3L 4213323 intron CG43367 + chr3L 4213381 intron CG43367 + chr3L 4213439 intron CG43367 + chr3L_8_4210001 chr3L_4210001 RAL-491 699 chr3L 4293414 4293434 chr3L 4293677 4293699 6 261 2.0 2.5 2.2 1.9 285 chr3L 4293414 3` UTR CG1319 + chr3L 4293556 intergenic CG1319 +,dyl - chr3L 4293699 intergenic CG1319 +,dyl - chr3L_6_4290001 chr3L_4290001 RAL-491 700 chr3L 4597215 4597246 chr3L 4597297 4597309 7 75 3.0 6.5 4.8 1.2 94 chr3L 4597215 intron Src64B - chr3L 4597262 intron Src64B - chr3L 4597309 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-491 701 chr3L 4607283 4607287 chr3L 4607369 4607377 4 90 2.0 3.0 2.5 1.1 94 chr3L 4607283 intron Src64B - chr3L 4607330 intron Src64B - chr3L 4607377 intron Src64B - chr3L_4_4605001 chr3L_4605001 RAL-491 702 chr3L 4657969 4657999 chr3L 4658430 4658460 8 460 0.5 3.5 2.0 2.7 491 chr3L 4657969 intron axo - chr3L 4658214 intron axo - chr3L 4658460 intron axo - chr3L_8_4655001 chr3L_4655001 RAL-491 703 chr3L 4691917 4691929 chr3L 4692006 4692019 4 88 1.0 0.0 0.5 2.7 102 chr3L 4691917 intergenic not near genes chr3L 4691968 intergenic not near genes chr3L 4692019 intergenic not near genes chr3L_4_4690001 chr3L_4690001 RAL-491 704 chr3L 4837890 4837923 chr3L 4837968 4838002 7 78 2.5 3.5 3.0 1.8 112 chr3L 4837890 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838002 3` UTR CG13707 - chr3L_7_4835001 chr3L_4835001 RAL-491 705 chr3L 4858308 4858337 chr3L 4858398 4858415 4 79 3.0 4.0 3.5 0.9 107 chr3L 4858308 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858415 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-491 706 chr3L 4901126 4901155 chr3L 4907315 4907345 diver 5 6190 4.0 2.0 3.0 1.2 6219 chr3L 4901126 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907345 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-491 707 chr3L 4908909 4908931 chr3L 4909016 4909033 10 106 2.5 1.5 2.0 3.3 124 chr3L 4908909 intergenic not near genes chr3L 4908971 intergenic not near genes chr3L 4909033 intergenic not near genes chr3L_10_4905001 chr3L_4905001 RAL-491 708 chr3L 4958442 4958447 chr3L 4958510 4958516 6 78 1.5 3.0 2.2 1.9 74 chr3L 4958442 intron Con - chr3L 4958479 intron Con - chr3L 4958516 intron Con - chr3L_6_4955001 chr3L_4955001 RAL-491 709 chr3L 5034164 5034192 chr3L 5043315 5043344 roo 6 9151 2.0 0.5 1.2 2.7 9180 chr3L 5034164 intron Con - chr3L 5038754 intron Con - chr3L 5043344 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-491 710 chr3L 5164636 5164666 chr3L 5164712 5164742 9 73 1.5 1.5 1.5 3.6 106 chr3L 5164636 intron shep - chr3L 5164689 intron shep - chr3L 5164742 intron shep - chr3L_9_5160001 chr3L_5160001 RAL-491 711 chr3L 5190180 5190213 chr3L 5190304 5190337 12 120 3.5 0.5 2.0 4.0 157 chr3L 5190180 intron shep - chr3L 5190258 intron shep - chr3L 5190337 intron shep - chr3L_12_5190001 chr3L_5190001 RAL-491 712 chr3L 5212240 5212267 chr3L 5212323 5212350 7 80 6.0 6.5 6.2 1.0 110 chr3L 5212240 intron shep - chr3L 5212295 intron shep - chr3L 5212350 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-491 713 chr3L 5213264 5213276 chr3L 5213358 5213370 7 94 0.0 3.0 1.5 2.8 106 chr3L 5213264 intron shep - chr3L 5213317 intron shep - chr3L 5213370 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-491 714 chr3L 5227368 5227396 chr3L 5227727 5227756 8 358 2.0 2.5 2.2 2.5 388 chr3L 5227368 intron shep - chr3L 5227562 intron shep - chr3L 5227756 intron shep - chr3L_8_5225001 chr3L_5225001 RAL-491 715 chr3L 5520354 5520376 chr3L 5520461 5520483 7 107 0.5 2.0 1.2 3.2 129 chr3L 5520354 intron Lkr - chr3L 5520418 intron Lkr - chr3L 5520483 intron Lkr - chr3L_7_5520001 chr3L_5520001 RAL-491 716 chr3L 5561689 5561698 chr3L 5561762 5561780 4 80 1.0 3.0 2.0 1.3 91 chr3L 5561689 intergenic Sucb -,sinu - chr3L 5561734 3` UTR Sucb - chr3L 5561780 3` UTR Sucb - chr3L_4_5560001 chr3L_5560001 RAL-491 717 chr3L 5658171 5658175 chr3L 5658255 5658259 4 84 1.0 3.0 2.0 1.3 88 chr3L 5658171 5` UTR sif + chr3L 5658215 5` UTR sif + chr3L 5658259 5` UTR sif + chr3L_4_5655001 chr3L_5655001 RAL-491 718 chr3L 5825918 5825928 chr3L 5825971 5825997 9 64 0.5 1.5 1.0 4.5 79 chr3L 5825918 intron vn - chr3L 5825958 intron vn - chr3L 5825997 intron vn - chr3L_9_5825001 chr3L_5825001 RAL-491 719 chr3L 5910031 5910052 chr3L 5910272 5910293 pogo 9 241 3.0 1.0 2.0 3.0 262 chr3L 5910031 intron CG13288 + chr3L 5910162 intron CG13288 + chr3L 5910293 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-491 720 chr3L 5926327 5926342 chr3L 5926504 5926505 BS 6 175 1.0 3.0 2.0 2.0 178 chr3L 5926327 intron Vap-33B + chr3L 5926416 intron Vap-33B + chr3L 5926505 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-491 721 chr3L 6001684 6001688 chr3L 6004384 6004388 jockey 4 2700 5.0 3.5 4.2 0.8 2704 chr3L 6001684 intron PVRAP + chr3L 6003036 intron PVRAP + chr3L 6004388 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-491 722 chr3L 6001689 6001712 chr3L 6004382 6004406 jockey 4 2695 4.0 3.5 3.8 0.8 2717 chr3L 6001689 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004406 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-491 723 chr3L 6040274 6040278 chr3L 6040354 6040356 4 80 4.5 0.0 2.2 1.2 82 chr3L 6040274 intergenic Jon65Aiv + chr3L 6040315 intergenic Jon65Aiv + chr3L 6040356 intergenic Jon65Aiv + chr3L_4_6040001 chr3L_6040001 RAL-491 724 chr3L 6040290 6040302 chr3L 6040353 6040382 4 72 2.0 0.0 1.0 2.0 92 chr3L 6040290 intergenic Jon65Aiv + chr3L 6040336 intergenic Jon65Aiv + chr3L 6040382 intergenic Jon65Aiv + chr3L_4_6040001 chr3L_6040001 RAL-491 725 chr3L 6220914 6220947 chr3L 6230066 6230098 roo 12 9149 4.0 3.5 3.8 2.5 9184 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-491 726 chr3L 6231155 6231372 chr3L 6231235 6231438 4 77 0.5 1.0 0.8 2.2 283 chr3L 6231155 intergenic not near genes chr3L 6231296 intergenic not near genes chr3L 6231438 intergenic CG13299 - chr3L_4_6230001 chr3L_6230001 RAL-491 727 chr3L 6267329 6267349 chr3L 6267405 6267437 9 87 2.5 3.5 3.0 2.2 108 chr3L 6267329 intergenic not near genes chr3L 6267383 intergenic not near genes chr3L 6267437 intergenic not near genes chr3L_9_6265001 chr3L_6265001 RAL-491 728 chr3L 6438730 6438763 chr3L 6438822 6438854 11 89 2.5 2.0 2.2 3.4 124 chr3L 6438730 intron CG42747 + chr3L 6438792 intron CG42747 + chr3L 6438854 intron CG42747 + chr3L_11_6435001 chr3L_6435001 RAL-491 729 chr3L 6442150 6442182 chr3L 6442371 6442398 6 216 24.0 23.5 23.8 0.2 248 chr3L 6442150 intron CG42747 + chr3L 6442274 intron CG42747 + chr3L 6442398 intron CG42747 + chr3L_6_6440001 chr3L_6440001 RAL-491 730 chr3L 6506026 6506060 chr3L 6506374 6506408 12 347 2.5 5.0 3.8 2.5 382 chr3L 6506026 intron sfl + chr3L 6506217 intron sfl + chr3L 6506408 intron sfl + chr3L_12_6505001 chr3L_6505001 RAL-491 731 chr3L 6573660 6573687 chr3L 6573758 6573788 10 100 2.5 2.5 2.5 2.9 128 chr3L 6573660 intron,intron CG18769 +,jv - chr3L 6573724 intron,intron CG18769 +,jv - chr3L 6573788 intron,intron CG18769 +,jv - chr3L_10_6570001 chr3L_6570001 RAL-491 732 chr3L 6659324 6659355 chr3L 6659401 6659432 8 75 0.5 3.5 2.0 2.7 108 chr3L 6659324 intergenic not near genes chr3L 6659378 intergenic not near genes chr3L 6659432 intergenic not near genes chr3L_8_6655001 chr3L_6655001 RAL-491 733 chr3L 6668965 6668995 chr3L 6669046 6669076 8 78 2.0 0.0 1.0 4.0 111 chr3L 6668965 intergenic not near genes chr3L 6669020 intergenic not near genes chr3L 6669076 intergenic not near genes chr3L_8_6665001 chr3L_6665001 RAL-491 734 chr3L 6781125 6781137 chr3L 6783136 6783150 Doc 4 2011 3.5 0.0 1.8 1.4 2025 chr3L 6781125 intergenic not near genes chr3L 6782138 intergenic not near genes chr3L 6783150 intergenic not near genes chr3L_4_6780001 chr3L_6780001 RAL-491 735 chr3L 6855934 6855951 chr3L 6860716 6860720 Doc 5 4779 2.0 1.5 1.8 1.8 4786 chr3L 6855934 intergenic not near genes chr3L 6858327 intergenic not near genes chr3L 6860720 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-491 736 chr3L 6887518 6887548 chr3L 6895009 6895039 roo 8 7491 1.5 2.5 2.0 2.7 7521 chr3L 6887518 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895039 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-491 737 chr3L 7244938 7244965 chr3L 7245023 7245042 10 85 1.5 1.5 1.5 4.0 104 chr3L 7244938 exon mei-P22 + chr3L 7244990 exon mei-P22 + chr3L 7245042 exon mei-P22 + chr3L_10_7240001 chr3L_7240001 RAL-491 738 chr3L 7285453 7285477 chr3L 7285528 7285554 5 77 2.5 2.5 2.5 1.4 101 chr3L 7285453 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285554 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-491 739 chr3L 7288849 7288880 chr3L 7288940 7288961 5 85 3.5 0.5 2.0 1.7 112 chr3L 7288849 intron unc-13-4A - chr3L 7288905 intron unc-13-4A - chr3L 7288961 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-491 740 chr3L 7505415 7505437 chr3L 7505491 7505513 5 76 0.5 5.0 2.8 1.3 98 chr3L 7505415 intergenic CG7548 - chr3L 7505464 intergenic CG7548 - chr3L 7505513 intergenic CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-491 741 chr3L 7793710 7793743 chr3L 7800762 7800794 297 7 7049 2.5 1.5 2.0 2.3 7084 chr3L 7793710 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-491 742 chr3L 7886512 7886546 chr3L 7889030 7889061 Stalker4 9 2517 1.5 3.0 2.2 2.8 2549 chr3L 7886512 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889061 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-491 743 chr3L 7916831 7916858 chr3L 7926000 7926029 roo 5 9168 2.0 2.0 2.0 1.7 9198 chr3L 7916831 3` UTR syd - chr3L 7921430 intron syd - chr3L 7926029 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-491 744 chr3L 7985377 7985396 chr3L 7987690 7987723 NOF 6 2325 5.0 1.0 3.0 1.5 2346 chr3L 7985377 intron nmo + chr3L 7986550 intron nmo + chr3L 7987723 intron nmo + chr3L_6_7985001 chr3L_7985001 RAL-491 745 chr3L 8019700 8019711 chr3L 8024113 8024120 NOF 4 4411 2.0 0.5 1.2 1.8 4420 chr3L 8019700 intron nmo + chr3L 8021910 intron nmo + chr3L 8024120 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-491 746 chr3L 8203555 8203561 chr3L 8203630 8203638 4 75 4.0 5.5 4.8 0.7 83 chr3L 8203555 intergenic CG13679 + chr3L 8203596 intergenic CG13679 + chr3L 8203638 intergenic CG13679 + chr3L_4_8200001 chr3L_8200001 RAL-491 747 chr3L 8295807 8295826 chr3L 8295948 8295984 7 155 1.0 3.0 2.0 2.3 177 chr3L 8295807 intergenic CG7201 - chr3L 8295896 intergenic not near genes chr3L 8295984 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-491 748 chr3L 8392569 8392788 chr3L 8392654 8392872 11 82 0.5 0.5 0.5 7.3 303 chr3L 8392569 intergenic Jon66Ci +,Jon66Cii - chr3L 8392720 intergenic Jon66Cii -,Jon66Ci + chr3L 8392872 exon Jon66Cii - chr3L_11_8390001 chr3L_8390001 RAL-491 749 chr3L 8584923 8584949 chr3L 8585017 8585037 8 93 1.5 3.0 2.2 2.5 114 chr3L 8584923 intron CG43078 + chr3L 8584980 intron CG43078 + chr3L 8585037 intron CG43078 + chr3L_8_8580001 chr3L_8580001 RAL-491 750 chr3L 8591262 8591281 chr3L 8591386 8591415 4 128 4.0 1.5 2.8 1.1 153 chr3L 8591262 intron CG43078 + chr3L 8591338 intron CG43078 + chr3L 8591415 intron CG43078 + chr3L_4_8590001 chr3L_8590001 RAL-491 751 chr3L 8782126 8782143 chr3L 8782252 8782268 5 126 7.0 3.5 5.2 0.8 142 chr3L 8782126 intron Fhos + chr3L 8782197 intron Fhos + chr3L 8782268 intron Fhos + chr3L_5_8780001 chr3L_8780001 RAL-491 752 chr3L 9024511 9024527 chr3L 9024591 9024607 4 80 5.0 3.5 4.2 0.8 96 chr3L 9024511 intergenic not near genes chr3L 9024559 intergenic not near genes chr3L 9024607 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-491 753 chr3L 9076934 9076937 chr3L 9084494 9084497 412 4 7560 4.5 2.0 3.2 1.0 7563 chr3L 9076934 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084497 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-491 754 chr3L 9076941 9076959 chr3L 9084492 9084517 412 10 7554 1.5 2.0 1.8 3.6 7576 chr3L 9076941 exon Tequila + chr3L 9080729 intron Tequila + chr3L 9084517 exon Tequila + chr3L_10_9080001 chr3L_9080001 RAL-491 755 chr3L 9130557 9130582 chr3L 9134318 9134343 412 5 3760 4.5 4.5 4.5 0.9 3786 chr3L 9130557 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-491 756 chr3L 9164699 9164728 chr3L 9166166 9166194 hobo 7 1463 2.0 1.0 1.5 2.8 1495 chr3L 9164699 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166194 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-491 757 chr3L 9219242 9219276 chr3L 9219914 9219919 jockey 9 662 5.0 2.0 3.5 2.0 677 chr3L 9219242 intergenic not near genes chr3L 9219580 intergenic not near genes chr3L 9219919 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-491 758 chr3L 9443523 9443531 chr3L 9445304 9445321 S-element 4 1788 0.5 3.5 2.0 1.3 1798 chr3L 9443523 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445321 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-491 759 chr3L 9493615 9493646 chr3L 9493689 9493722 6 74 1.5 2.5 2.0 2.0 107 chr3L 9493615 intergenic not near genes chr3L 9493668 intergenic not near genes chr3L 9493722 intergenic not near genes chr3L_6_9490001 chr3L_9490001 RAL-491 760 chr3L 9502616 9502637 chr3L 9502696 9502716 6 79 0.5 1.0 0.8 3.3 100 chr3L 9502616 intron path - chr3L 9502666 intron path - chr3L 9502716 intron path - chr3L_6_9500001 chr3L_9500001 RAL-491 761 chr3L 9526488 9526516 chr3L 9528165 9528196 Doc 6 1678 0.5 1.0 0.8 3.3 1708 chr3L 9526488 intergenic not near genes chr3L 9527342 intergenic not near genes chr3L 9528196 intergenic not near genes chr3L_6_9525001 chr3L_9525001 RAL-491 762 chr3L 9571898 9571934 chr3L 9572246 9572282 jockey 5 348 1.5 2.0 1.8 1.8 384 chr3L 9571898 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572282 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-491 763 chr3L 9575908 9575945 chr3L 9580984 9581023 jockey 10 5075 1.5 3.5 2.5 2.9 5115 chr3L 9575908 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-491 764 chr3L 9775382 9775398 chr3L 9775741 9775743 5 356 0.0 6.0 3.0 1.2 361 chr3L 9775382 intron CG8177 + chr3L 9775562 intron CG8177 + chr3L 9775743 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-491 765 chr3L 9781694 9781960 chr3L 9781796 9782095 10 116 3.0 0.5 1.8 3.6 401 chr3L 9781694 intron CG8177 + chr3L 9781894 intron CG8177 + chr3L 9782095 intron CG8177 + chr3L_10_9780001 chr3L_9780001 RAL-491 766 chr3L 9848519 9848541 chr3L 9848595 9848617 6 74 3.0 0.0 1.5 2.4 98 chr3L 9848519 intron RasGAP1 - chr3L 9848568 intron RasGAP1 - chr3L 9848617 intron RasGAP1 - chr3L_6_9845001 chr3L_9845001 RAL-491 767 chr3L 9918891 9918905 chr3L 9918981 9919000 5 91 4.5 4.0 4.2 1.0 109 chr3L 9918891 intron CG34356 + chr3L 9918946 intron CG34356 + chr3L 9919000 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-491 768 chr3L 9940732 9940751 chr3L 9943591 9943610 4 2861 16.5 11.0 13.8 0.3 2878 chr3L 9940732 intron CG34356 + chr3L 9942171 intron CG34356 + chr3L 9943610 intron CG34356 + chr3L_4_9940001 chr3L_9940001 RAL-491 769 chr3L 10052903 10052906 chr3L 10053001 10053009 5 102 8.0 3.5 5.8 0.7 106 chr3L 10052903 intron dpr6 + chr3L 10052956 intron dpr6 + chr3L 10053009 intron dpr6 + chr3L_5_10050001 chr3L_10050001 RAL-491 770 chr3L 10214730 10214827 chr3L 10214817 10214929 9 93 0.0 0.0 0.0 9.0 199 chr3L 10214730 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214929 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-491 771 chr3L 10395541 10395566 chr3L 10395693 10395712 4 146 2.5 5.0 3.8 0.8 171 chr3L 10395541 intergenic not near genes chr3L 10395626 intergenic not near genes chr3L 10395712 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-491 772 chr3L 10538705 10538712 chr3L 10538774 10538784 4 74 3.0 1.5 2.2 1.2 79 chr3L 10538705 intron A2bp1 + chr3L 10538744 intron A2bp1 + chr3L 10538784 intron A2bp1 + chr3L_4_10535001 chr3L_10535001 RAL-491 773 chr3L 10600457 10600468 chr3L 10600539 10600550 4 82 4.0 0.5 2.2 1.2 93 chr3L 10600457 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-491 774 chr3L 10621848 10621880 chr3L 10621935 10621967 8 84 2.0 3.0 2.5 2.3 119 chr3L 10621848 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621967 intergenic not near genes chr3L_8_10620001 chr3L_10620001 RAL-491 775 chr3L 10654141 10654152 chr3L 10654215 10654217 4 77 2.0 0.0 1.0 2.0 76 chr3L 10654141 intron CG32066 - chr3L 10654179 intron CG32066 - chr3L 10654217 intron CG32066 - chr3L_4_10650001 chr3L_10650001 RAL-491 776 chr3L 10658081 10658212 chr3L 10658157 10658334 16 97 0.0 0.0 0.0 16.0 253 chr3L 10658081 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_16_10655001 chr3L_10655001 RAL-491 777 chr3L 10705124 10705134 chr3L 10705386 10705404 4 263 3.0 3.0 3.0 1.0 280 chr3L 10705124 intergenic not near genes chr3L 10705264 intergenic not near genes chr3L 10705404 intergenic not near genes chr3L_4_10705001 chr3L_10705001 RAL-491 778 chr3L 10856943 10856958 chr3L 10857019 10857024 4 72 3.5 5.5 4.5 0.7 81 chr3L 10856943 intergenic not near genes chr3L 10856984 intergenic not near genes chr3L 10857024 intergenic not near genes chr3L_4_10855001 chr3L_10855001 RAL-491 779 chr3L 11085686 11085702 chr3L 11085769 11085785 9 81 0.5 2.0 1.2 4.1 99 chr3L 11085686 exon JIL-1 - chr3L 11085736 intron JIL-1 - chr3L 11085785 intron JIL-1 - chr3L_9_11085001 chr3L_11085001 RAL-491 780 chr3L 11087067 11087069 chr3L 11088849 11088858 S-element 4 1784 1.5 2.0 1.8 1.4 1791 chr3L 11087067 intron JIL-1 - chr3L 11087962 intron JIL-1 - chr3L 11088858 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-491 781 chr3L 11087071 11087087 chr3L 11088848 11088876 S-element 8 1787 0.5 2.0 1.2 3.6 1805 chr3L 11087071 intron JIL-1 - chr3L 11087974 intron JIL-1 - chr3L 11088876 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-491 782 chr3L 11127944 11127957 chr3L 11128033 11128060 4 99 1.5 2.5 2.0 1.3 116 chr3L 11127944 intron CG42575 + chr3L 11128002 intron CG42575 + chr3L 11128060 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-491 783 chr3L 11264466 11264491 chr3L 11271416 11271443 17.6 5 6951 3.0 1.0 2.0 1.7 6977 chr3L 11264466 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271443 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-491 784 chr3L 11329697 11329719 chr3L 11332902 11332922 jockey 5 3204 3.0 3.0 3.0 1.2 3225 chr3L 11329697 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332922 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-491 785 chr3L 11381585 11381610 chr3L 11381772 11381803 5 190 1.0 2.0 1.5 2.0 218 chr3L 11381585 intergenic not near genes chr3L 11381694 intergenic not near genes chr3L 11381803 intergenic not near genes chr3L_5_11380001 chr3L_11380001 RAL-491 786 chr3L 11587922 11587952 chr3L 11587996 11588014 6 71 4.5 2.5 3.5 1.3 92 chr3L 11587922 intergenic rt - chr3L 11587968 intergenic rt - chr3L 11588014 intergenic rt - chr3L_6_11585001 chr3L_11585001 RAL-491 787 chr3L 11588731 11588759 chr3L 11588887 11588915 10 154 0.5 4.5 2.5 2.9 184 chr3L 11588731 intergenic not near genes chr3L 11588823 intergenic not near genes chr3L 11588915 intergenic not near genes chr3L_10_11585001 chr3L_11585001 RAL-491 788 chr3L 11723083 11723116 chr3L 11727877 11727909 Doc 7 4795 4.5 1.0 2.8 1.8 4826 chr3L 11723083 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-491 789 chr3L 11744014 11744040 chr3L 11744122 11744148 6 108 5.5 0.0 2.8 1.6 134 chr3L 11744014 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-491 790 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 8.5 17.0 12.8 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-491 791 chr3L 11811455 11811489 chr3L 11811533 11811565 11 77 2.0 4.5 3.2 2.6 110 chr3L 11811455 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811565 exon CG42255 - chr3L_11_11810001 chr3L_11810001 RAL-491 792 chr3L 11816788 11816806 chr3L 11816889 11816906 6 100 5.5 3.0 4.2 1.2 118 chr3L 11816788 3` UTR CG5946 - chr3L 11816847 3` UTR CG5946 - chr3L 11816906 3` UTR CG5946 - chr3L_6_11815001 chr3L_11815001 RAL-491 793 chr3L 11849334 11849354 chr3L 11849434 11849454 8 96 2.0 0.5 1.2 3.6 120 chr3L 11849334 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849454 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-491 794 chr3L 11864565 11864574 chr3L 11865859 11865869 pogo 4 1293 5.5 5.0 5.2 0.6 1304 chr3L 11864565 intron CG44837 - chr3L 11865217 intron CG44837 - chr3L 11865869 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-491 795 chr3L 11943495 11943520 chr3L 11943595 11943621 8 99 1.0 2.0 1.5 3.2 126 chr3L 11943495 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943621 intergenic CG5883 -,Rpt4R + chr3L_8_11940001 chr3L_11940001 RAL-491 796 chr3L 11984574 11984585 chr3L 11984659 11984663 4 85 5.0 0.5 2.8 1.1 89 chr3L 11984574 intergenic CG6938 + chr3L 11984618 intergenic CG6938 + chr3L 11984663 intergenic CG6938 + chr3L_4_11980001 chr3L_11980001 RAL-491 797 chr3L 12012304 12012323 chr3L 12012382 12012388 5 72 4.0 5.5 4.8 0.9 84 chr3L 12012304 intron rols - chr3L 12012346 intron rols - chr3L 12012388 intron rols - chr3L_5_12010001 chr3L_12010001 RAL-491 798 chr3L 12013915 12013937 chr3L 12014003 12014028 6 89 3.5 2.0 2.8 1.6 113 chr3L 12013915 intron rols - chr3L 12013972 intron rols - chr3L 12014028 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-491 799 chr3L 12052704 12052738 chr3L 12052793 12052826 12 86 1.5 2.0 1.8 4.3 122 chr3L 12052704 intron rols - chr3L 12052765 intron rols - chr3L 12052826 intron rols - chr3L_12_12050001 chr3L_12050001 RAL-491 800 chr3L 12092030 12092051 chr3L 12092110 12092133 8 82 1.5 0.0 0.8 4.4 103 chr3L 12092030 intergenic not near genes chr3L 12092082 intergenic not near genes chr3L 12092133 intergenic not near genes chr3L_8_12090001 chr3L_12090001 RAL-491 801 chr3L 12158777 12158807 chr3L 12160247 12160277 5 1471 47.0 36.5 41.8 0.1 1500 chr3L 12158777 intron CG9760 - chr3L 12159527 exon CG9760 - chr3L 12160277 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-491 802 chr3L 12156429 12156460 chr3L 12160314 12160345 8 3891 14.0 16.5 15.2 0.5 3916 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158387 intron CG9760 - chr3L 12160345 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-491 803 chr3L 12170791 12170824 chr3L 12170872 12170906 8 81 1.0 1.0 1.0 4.0 115 chr3L 12170791 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170906 intron Rh7 - chr3L_8_12170001 chr3L_12170001 RAL-491 804 chr3L 12378585 12378601 chr3L 12378754 12378763 4 167 4.0 2.5 3.2 1.0 178 chr3L 12378585 intron Ncc69 - chr3L 12378674 intron Ncc69 - chr3L 12378763 intron Ncc69 - chr3L_4_12375001 chr3L_12375001 RAL-491 805 chr3L 12392449 12392464 chr3L 12392568 12392583 4 118 4.0 3.0 3.5 0.9 134 chr3L 12392449 intergenic not near genes chr3L 12392516 intergenic not near genes chr3L 12392583 intergenic not near genes chr3L_4_12390001 chr3L_12390001 RAL-491 806 chr3L 12392466 12392480 chr3L 12392566 12392580 4 110 1.0 3.0 2.0 1.3 114 chr3L 12392466 intergenic not near genes chr3L 12392523 intergenic not near genes chr3L 12392580 intergenic not near genes chr3L_4_12390001 chr3L_12390001 RAL-491 807 chr3L 12413048 12413064 chr3L 12413121 12413142 4 77 4.5 0.5 2.5 1.1 94 chr3L 12413048 intron CG32103 - chr3L 12413095 intron CG32103 - chr3L 12413142 intron CG32103 - chr3L_4_12410001 chr3L_12410001 RAL-491 808 chr3L 12626154 12626156 chr3L 12626261 12626262 4 108 1.5 3.0 2.2 1.2 108 chr3L 12626154 intergenic not near genes chr3L 12626208 intergenic not near genes chr3L 12626262 intergenic not near genes chr3L_4_12625001 chr3L_12625001 RAL-491 809 chr3L 12801980 12802011 chr3L 12802056 12802087 4 76 1.0 0.5 0.8 2.2 107 chr3L 12801980 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802087 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-491 810 chr3L 12874927 12874960 chr3L 12877219 12877251 jockey 9 2290 0.5 2.0 1.2 4.1 2324 chr3L 12874927 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877251 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-491 811 chr3L 12919292 12919299 chr3L 12924765 12924778 Rt1c 4 5479 3.0 2.5 2.8 1.1 5486 chr3L 12919292 intergenic not near genes chr3L 12922035 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-491 812 chr3L 12957806 12957818 chr3L 12962288 12962300 copia 4 4482 3.0 10.5 6.8 0.5 4494 chr3L 12957806 intergenic not near genes chr3L 12960053 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-491 813 chr3L 12967158 12967169 chr3L 12967221 12967253 5 71 1.0 3.0 2.0 1.7 95 chr3L 12967158 exon Or69a - chr3L 12967206 exon Or69a - chr3L 12967253 exon Or69a - chr3L_5_12965001 chr3L_12965001 RAL-491 814 chr3L 13069574 13069589 chr3L 13069653 13069654 4 75 1.5 4.0 2.8 1.1 80 chr3L 13069574 intergenic not near genes chr3L 13069614 intergenic not near genes chr3L 13069654 intergenic not near genes chr3L_4_13065001 chr3L_13065001 RAL-491 815 chr3L 13074038 13074069 chr3L 13074171 13074193 11 130 3.5 5.0 4.2 2.1 155 chr3L 13074038 intergenic not near genes chr3L 13074116 intergenic not near genes chr3L 13074193 intergenic not near genes chr3L_11_13070001 chr3L_13070001 RAL-491 816 chr3L 13142153 13142176 chr3L 13142261 13142289 9 112 1.5 2.5 2.0 3.0 136 chr3L 13142153 intergenic not near genes chr3L 13142221 intergenic not near genes chr3L 13142289 intergenic not near genes chr3L_9_13140001 chr3L_13140001 RAL-491 817 chr3L 13144121 13144132 chr3L 13144197 13144205 5 75 1.5 2.5 2.0 1.7 84 chr3L 13144121 intergenic not near genes chr3L 13144163 intergenic not near genes chr3L 13144205 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-491 818 chr3L 13206233 13206264 chr3L 13206315 13206346 8 77 1.0 2.0 1.5 3.2 113 chr3L 13206233 intergenic not near genes chr3L 13206290 intergenic not near genes chr3L 13206346 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-491 819 chr3L 13293127 13293145 chr3L 13293213 13293225 5 84 1.0 3.0 2.0 1.7 98 chr3L 13293127 intergenic not near genes chr3L 13293176 intergenic not near genes chr3L 13293225 intergenic not near genes chr3L_5_13290001 chr3L_13290001 RAL-491 820 chr3L 13311032 13311043 chr3L 13311112 13311117 4 79 6.0 4.5 5.2 0.6 85 chr3L 13311032 intergenic not near genes chr3L 13311074 intergenic not near genes chr3L 13311117 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-491 821 chr3L 13361778 13361808 chr3L 13361861 13361884 7 83 1.5 3.5 2.5 2.0 106 chr3L 13361778 intergenic not near genes chr3L 13361831 intergenic not near genes chr3L 13361884 intergenic not near genes chr3L_7_13360001 chr3L_13360001 RAL-491 822 chr3L 13525156 13525187 chr3L 13532952 13532983 roo 15 7791 4.0 3.0 3.5 3.3 7827 chr3L 13525156 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_15_13525001 chr3L_13525001 RAL-491 823 chr3L 13658851 13658882 chr3L 13659000 13659031 8 148 1.5 3.0 2.2 2.5 180 chr3L 13658851 intron bru-3 - chr3L 13658941 intron bru-3 - chr3L 13659031 intron bru-3 - chr3L_8_13655001 chr3L_13655001 RAL-491 824 chr3L 13677541 13677559 chr3L 13677618 13677636 4 74 2.0 4.5 3.2 1.0 95 chr3L 13677541 intron bru-3 - chr3L 13677588 intron bru-3 - chr3L 13677636 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-491 825 chr3L 13804549 13804577 chr3L 13822833 13822859 roo 5 18283 2.0 2.5 2.2 1.6 18310 chr3L 13804549 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822859 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-491 826 chr3L 13898052 13898087 chr3L 13898135 13898170 10 82 1.0 2.0 1.5 4.0 118 chr3L 13898052 intron dysc - chr3L 13898111 intron dysc - chr3L 13898170 intron dysc - chr3L_10_13895001 chr3L_13895001 RAL-491 827 chr3L 13901170 13901197 chr3L 13901274 13901294 5 99 2.0 1.0 1.5 2.0 124 chr3L 13901170 intron dysc - chr3L 13901232 intron dysc - chr3L 13901294 intron dysc - chr3L_5_13900001 chr3L_13900001 RAL-491 828 chr3L 13944037 13944072 chr3L 13944134 13944158 6 91 3.0 3.5 3.2 1.4 121 chr3L 13944037 intron CG32137 + chr3L 13944098 intron CG32137 + chr3L 13944158 intron CG32137 + chr3L_6_13940001 chr3L_13940001 RAL-491 829 chr3L 14076294 14076321 chr3L 14076372 14076399 5 77 0.5 2.0 1.2 2.3 105 chr3L 14076294 intron btl + chr3L 14076346 intron btl + chr3L 14076399 intron btl + chr3L_5_14075001 chr3L_14075001 RAL-491 830 chr3L 14155797 14155829 chr3L 14155888 14155918 6 89 1.5 1.0 1.2 2.7 121 chr3L 14155797 intergenic not near genes chr3L 14155858 intergenic not near genes chr3L 14155918 intergenic not near genes chr3L_6_14155001 chr3L_14155001 RAL-491 831 chr3L 14245571 14245585 chr3L 14245663 14245679 1360 4 92 6.0 2.0 4.0 0.8 108 chr3L 14245571 3` UTR CR44561 - chr3L 14245625 3` UTR CR44561 - chr3L 14245679 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-491 832 chr3L 14245587 14245593 chr3L 14245661 14245687 1360 5 82 5.0 2.0 3.5 1.1 100 chr3L 14245587 3` UTR CR44561 - chr3L 14245637 3` UTR CR44561 - chr3L 14245687 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-491 833 chr3L 14267376 14267400 chr3L 14271816 14271820 F-element 4 4431 2.0 1.0 1.5 1.6 4444 chr3L 14267376 intergenic not near genes chr3L 14269598 intergenic not near genes chr3L 14271820 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-491 834 chr3L 14303609 14303632 chr3L 14303702 14303714 7 87 3.0 2.5 2.8 1.8 105 chr3L 14303609 intron fz + chr3L 14303662 intron fz + chr3L 14303714 intron fz + chr3L_7_14300001 chr3L_14300001 RAL-491 835 chr3L 14356531 14356552 chr3L 14356599 14356632 11 78 3.5 1.5 2.5 3.1 101 chr3L 14356531 intron fz + chr3L 14356582 intron fz + chr3L 14356632 intron fz + chr3L_11_14355001 chr3L_14355001 RAL-491 836 chr3L 14375663 14375679 chr3L 14375781 14375796 6 118 1.5 2.0 1.8 2.1 133 chr3L 14375663 intergenic not near genes chr3L 14375730 intergenic not near genes chr3L 14375796 intergenic not near genes chr3L_6_14375001 chr3L_14375001 RAL-491 837 chr3L 14462642 14462664 chr3L 14462767 14462789 4 124 1.5 3.0 2.2 1.2 147 chr3L 14462642 intron bbg - chr3L 14462716 intron bbg - chr3L 14462789 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-491 838 chr3L 14468443 14468467 chr3L 14473650 14473674 copia 7 5207 3.0 2.0 2.5 2.0 5231 chr3L 14468443 intron bbg - chr3L 14471058 intron bbg - chr3L 14473674 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-491 839 chr3L 14473725 14473755 chr3L 14473811 14473830 7 83 1.5 1.5 1.5 2.8 105 chr3L 14473725 intron bbg - chr3L 14473778 intron bbg - chr3L 14473830 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-491 840 chr3L 14486141 14486171 chr3L 14486218 14486247 4 74 0.0 2.0 1.0 2.0 106 chr3L 14486141 intron bbg - chr3L 14486194 intron bbg - chr3L 14486247 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-491 841 chr3L 14506385 14506406 chr3L 14506977 14506998 5 590 5.0 4.0 4.5 0.9 613 chr3L 14506385 intron bbg - chr3L 14506692 intron bbg - chr3L 14506998 intron bbg - chr3L_5_14505001 chr3L_14505001 RAL-491 842 chr3L 14518839 14518868 chr3L 14518995 14519024 7 152 1.0 3.0 2.0 2.3 185 chr3L 14518839 intron bbg - chr3L 14518932 intron bbg - chr3L 14519024 intron bbg - chr3L_7_14515001 chr3L_14515001 RAL-491 843 chr3L 14917661 14917673 chr3L 14917744 14917747 4 81 8.0 4.0 6.0 0.6 86 chr3L 14917661 intron DCX-EMAP + chr3L 14917704 intron DCX-EMAP + chr3L 14917747 intron DCX-EMAP + chr3L_4_14915001 chr3L_14915001 RAL-491 844 chr3L 15153876 15153905 chr3L 15154062 15154089 15 188 12.5 16.5 14.5 1.0 213 chr3L 15153876 3` UTR FucTA + chr3L 15153982 3` UTR FucTA + chr3L 15154089 3` UTR FucTA + chr3L_15_15150001 chr3L_15150001 RAL-491 845 chr3L 15201415 15201444 chr3L 15201512 15201527 4 94 1.5 2.5 2.0 1.3 112 chr3L 15201415 intergenic not near genes chr3L 15201471 intergenic not near genes chr3L 15201527 intergenic not near genes chr3L_4_15200001 chr3L_15200001 RAL-491 846 chr3L 15217105 15217136 chr3L 15217221 15217238 5 113 3.0 2.5 2.8 1.3 133 chr3L 15217105 intergenic not near genes chr3L 15217172 intergenic not near genes chr3L 15217238 intergenic not near genes chr3L_5_15215001 chr3L_15215001 RAL-491 847 chr3L 15406043 15406055 chr3L 15406115 15406137 4 80 1.0 5.0 3.0 1.0 94 chr3L 15406043 intergenic not near genes chr3L 15406090 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-491 848 chr3L 15423768 15423783 chr3L 15426612 15426621 opus 4 2842 2.5 2.5 2.5 1.1 2853 chr3L 15423768 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426621 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-491 849 chr3L 15472656 15472660 chr3L 15472723 15472724 4 71 9.5 10.5 10.0 0.4 68 chr3L 15472656 exon CG7804 - chr3L 15472690 exon CG7804 - chr3L 15472724 exon CG7804 - chr3L_4_15470001 chr3L_15470001 RAL-491 850 chr3L 15737381 15737395 chr3L 15737471 15737481 5 89 4.0 0.0 2.0 1.7 100 chr3L 15737381 intergenic not near genes chr3L 15737431 intergenic not near genes chr3L 15737481 intergenic not near genes chr3L_5_15735001 chr3L_15735001 RAL-491 851 chr3L 15769003 15769012 chr3L 15769111 15769111 4 107 2.5 0.0 1.2 1.8 108 chr3L 15769003 intergenic not near genes chr3L 15769057 intergenic not near genes chr3L 15769111 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-491 852 chr3L 15773507 15773536 chr3L 15773736 15773764 10 227 3.0 3.5 3.2 2.4 257 chr3L 15773507 intergenic not near genes chr3L 15773636 intergenic not near genes chr3L 15773764 intergenic not near genes chr3L_10_15770001 chr3L_15770001 RAL-491 853 chr3L 15832258 15832286 chr3L 15832333 15832365 10 80 2.0 2.5 2.2 3.1 107 chr3L 15832258 intergenic CG12713 +,dbo + chr3L 15832312 intergenic CG12713 +,dbo + chr3L 15832365 intergenic CG12713 +,dbo + chr3L_10_15830001 chr3L_15830001 RAL-491 854 chr3L 15871603 15871615 chr3L 15871687 15871699 4 83 1.0 7.5 4.2 0.8 96 chr3L 15871603 intron pHCl - chr3L 15871651 intron pHCl - chr3L 15871699 intron pHCl - chr3L_4_15870001 chr3L_15870001 RAL-491 855 chr3L 15883190 15883223 chr3L 15883483 15883496 7 290 1.5 1.5 1.5 2.8 306 chr3L 15883190 intron pHCl - chr3L 15883343 intron pHCl - chr3L 15883496 intron pHCl - chr3L_7_15880001 chr3L_15880001 RAL-491 856 chr3L 15939853 15939883 chr3L 15939927 15939959 6 75 1.0 1.0 1.0 3.0 106 chr3L 15939853 intron Pka-C3 - chr3L 15939906 intron Pka-C3 - chr3L 15939959 intron Pka-C3 - chr3L_6_15935001 chr3L_15935001 RAL-491 857 chr3L 15943954 15943984 chr3L 15944040 15944066 12 86 1.5 0.0 0.8 6.7 112 chr3L 15943954 intron Pka-C3 - chr3L 15944010 intron Pka-C3 - chr3L 15944066 intron Pka-C3 - chr3L_12_15940001 chr3L_15940001 RAL-491 858 chr3L 16070748 16070754 chr3L 16070825 16070831 4 76 4.0 4.0 4.0 0.8 83 chr3L 16070748 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070831 intron Mbs + chr3L_4_16070001 chr3L_16070001 RAL-491 859 chr3L 16162605 16162624 chr3L 16162689 16162707 4 83 4.5 3.0 3.8 0.8 102 chr3L 16162605 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162707 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-491 860 chr3L 16162626 16162629 chr3L 16162686 16162713 5 72 3.0 3.0 3.0 1.2 87 chr3L 16162626 intron CG5151 - chr3L 16162670 intron CG5151 - chr3L 16162713 intron CG5151 - chr3L_5_16160001 chr3L_16160001 RAL-491 861 chr3L 16217002 16217028 chr3L 16217089 16217115 4 86 0.0 8.0 4.0 0.8 113 chr3L 16217002 intron CG13073 - chr3L 16217058 intron CG13073 - chr3L 16217115 5` UTR CG13073 - chr3L_4_16215001 chr3L_16215001 RAL-491 862 chr3L 16322822 16322852 chr3L 16322912 16322940 15 86 3.0 3.5 3.2 3.6 118 chr3L 16322822 intergenic not near genes chr3L 16322881 intergenic not near genes chr3L 16322940 intergenic not near genes chr3L_15_16320001 chr3L_16320001 RAL-491 863 chr3L 16360893 16360911 chr3L 16360968 16360986 5 73 3.5 4.5 4.0 1.0 93 chr3L 16360893 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360986 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-491 864 chr3L 16443849 16443877 chr3L 16446188 16446217 Doc 10 2338 2.0 5.5 3.8 2.1 2368 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_10_16445001 chr3L_16445001 RAL-491 865 chr3L 16493978 16494011 chr3L 16494495 16494527 jockey 12 516 7.0 5.5 6.2 1.7 549 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-491 866 chr3L 16533572 16533586 chr3L 16533674 16533697 5 107 0.0 2.5 1.2 2.3 125 chr3L 16533572 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533697 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-491 867 chr3L 16540072 16540085 chr3L 16540160 16540173 5 88 2.5 5.0 3.8 1.0 101 chr3L 16540072 intron CG43373 - chr3L 16540122 intron CG43373 - chr3L 16540173 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-491 868 chr3L 16610690 16610716 chr3L 16610774 16610801 7 83 2.0 4.5 3.2 1.7 111 chr3L 16610690 3` UTR Su(P) - chr3L 16610746 exon Su(P) - chr3L 16610801 exon Su(P) - chr3L_7_16610001 chr3L_16610001 RAL-491 869 chr3L 16749206 16749227 chr3L 16749281 16749289 10 72 3.5 2.5 3.0 2.5 83 chr3L 16749206 intergenic not near genes chr3L 16749248 intergenic not near genes chr3L 16749289 intergenic not near genes chr3L_10_16745001 chr3L_16745001 RAL-491 870 chr3L 16786985 16787002 chr3L 16787061 16787078 4 76 0.0 0.5 0.2 3.3 93 chr3L 16786985 intergenic Int6 - chr3L 16787032 intergenic Int6 - chr3L 16787078 intergenic Int6 -,CG9674 - chr3L_4_16785001 chr3L_16785001 RAL-491 871 chr3L 16808042 16808062 chr3L 16808116 16808138 4 75 1.5 0.0 0.8 2.2 96 chr3L 16808042 intron nudC + chr3L 16808090 intron nudC + chr3L 16808138 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-491 872 chr3L 16815851 16815888 chr3L 16815937 16815967 7 83 0.0 2.5 1.2 3.2 116 chr3L 16815851 intron,intron nudC +,CG13024 - chr3L 16815909 intron,intron nudC +,CG13024 - chr3L 16815967 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-491 873 chr3L 16818746 16818779 chr3L 16818822 16818855 7 75 4.0 6.0 5.0 1.2 109 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818855 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-491 874 chr3L 16845026 16845043 chr3L 16845139 16845155 4 111 2.0 1.5 1.8 1.4 129 chr3L 16845026 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845155 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-491 875 chr3L 16861031 16861052 chr3L 16861133 16861154 5 101 2.5 5.0 3.8 1.0 123 chr3L 16861031 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861154 intron,exon Rh4 -,CG13029 + chr3L_5_16860001 chr3L_16860001 RAL-491 876 chr3L 16870881 16870889 chr3L 16870969 16870980 4 90 1.0 0.0 0.5 2.7 99 chr3L 16870881 intron Lmpt + chr3L 16870930 intron Lmpt + chr3L 16870980 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-491 877 chr3L 16945727 16945760 chr3L 16954880 16954883 roo 9 9140 5.0 0.5 2.8 2.4 9156 chr3L 16945727 exon Obp73a + chr3L 16950305 intergenic not near genes chr3L 16954883 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-491 878 chr3L 17020758 17020785 chr3L 17020835 17020862 6 74 4.5 4.5 4.5 1.1 104 chr3L 17020758 exon CG6652 - chr3L 17020810 exon CG6652 - chr3L 17020862 intron CG6652 - chr3L_6_17020001 chr3L_17020001 RAL-491 879 chr3L 17034944 17034953 chr3L 17035132 17035139 G2 4 188 1.0 1.5 1.2 1.8 195 chr3L 17034944 intergenic not near genes chr3L 17035042 intergenic not near genes chr3L 17035139 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-491 880 chr3L 17331062 17331097 chr3L 17331152 17331187 5 90 3.5 0.5 2.0 1.7 125 chr3L 17331062 intergenic not near genes chr3L 17331124 intergenic not near genes chr3L 17331187 intergenic not near genes chr3L_5_17330001 chr3L_17330001 RAL-491 881 chr3L 17367439 17367460 chr3L 17367533 17367553 8 93 2.5 3.0 2.8 2.1 114 chr3L 17367439 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367553 intergenic CR45688 +,Cad74A - chr3L_8_17365001 chr3L_17365001 RAL-491 882 chr3L 17510745 17510765 chr3L 17510829 17510849 8 82 2.0 4.5 3.2 1.9 104 chr3L 17510745 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_8_17510001 chr3L_17510001 RAL-491 883 chr3L 17743436 17743444 chr3L 17743507 17743518 5 78 2.5 4.0 3.2 1.2 82 chr3L 17743436 intron Ccn + chr3L 17743477 intron Ccn + chr3L 17743518 intron Ccn + chr3L_5_17740001 chr3L_17740001 RAL-491 884 chr3L 17769084 17769090 chr3L 17769200 17769205 4 116 4.0 1.0 2.5 1.1 121 chr3L 17769084 intergenic not near genes chr3L 17769144 intergenic not near genes chr3L 17769205 intergenic not near genes chr3L_4_17765001 chr3L_17765001 RAL-491 885 chr3L 17769100 17769106 chr3L 17769191 17769222 5 107 2.0 1.0 1.5 2.0 122 chr3L 17769100 intergenic not near genes chr3L 17769161 intergenic not near genes chr3L 17769222 intergenic not near genes chr3L_5_17765001 chr3L_17765001 RAL-491 886 chr3L 17799816 17799841 chr3L 17801602 17801628 S-element 4 1786 0.5 2.0 1.2 1.8 1812 chr3L 17799816 intron NUCB1 - chr3L 17800722 intron NUCB1 - chr3L 17801628 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 RAL-491 887 chr3L 18061078 18061091 chr3L 18061155 18061169 4 78 3.0 6.5 4.8 0.7 91 chr3L 18061078 intron Eip75B - chr3L 18061124 intron Eip75B - chr3L 18061169 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-491 888 chr3L 18106262 18106284 chr3L 18106381 18106403 6 118 2.0 0.0 1.0 3.0 141 chr3L 18106262 intergenic CG13698 -,mRpS26 + chr3L 18106332 intergenic CG13698 -,mRpS26 + chr3L 18106403 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-491 889 chr3L 18133020 18133045 chr3L 18133110 18133129 7 89 1.0 1.0 1.0 3.5 109 chr3L 18133020 intergenic Cyp312a1 - chr3L 18133074 intergenic Cyp312a1 - chr3L 18133129 intergenic Cyp312a1 - chr3L_7_18130001 chr3L_18130001 RAL-491 890 chr3L 18221098 18221123 chr3L 18221179 18221187 8 76 0.0 0.0 0.0 8.0 89 chr3L 18221098 intergenic not near genes chr3L 18221142 intergenic not near genes chr3L 18221187 intergenic not near genes chr3L_8_18220001 chr3L_18220001 RAL-491 891 chr3L 18248962 18248986 chr3L 18249050 18249084 7 95 1.5 2.5 2.0 2.3 122 chr3L 18248962 intergenic not near genes chr3L 18249023 intergenic not near genes chr3L 18249084 intergenic not near genes chr3L_7_18245001 chr3L_18245001 RAL-491 892 chr3L 18408746 18408755 chr3L 18408829 18408835 4 83 2.0 4.5 3.2 1.0 89 chr3L 18408746 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408835 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-491 893 chr3L 9013689 9013694 chr3L 18417066 18417066 8 9403375 17.0 15.5 16.2 0.5 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-491 894 chr3L 18456285 18456297 chr3L 18456373 18456385 4 87 2.5 3.0 2.8 1.1 100 chr3L 18456285 intergenic CR44670 - chr3L 18456335 intergenic CR44670 - chr3L 18456385 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-491 895 chr3L 18528630 18528659 chr3L 18537791 18537820 roo 5 9160 1.5 0.5 1.0 2.5 9190 chr3L 18528630 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537820 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-491 896 chr3L 18546704 18546736 chr3L 18546798 18546829 7 94 1.0 1.5 1.2 3.2 125 chr3L 18546704 intergenic not near genes chr3L 18546766 intergenic not near genes chr3L 18546829 intergenic not near genes chr3L_7_18545001 chr3L_18545001 RAL-491 897 chr3L 18649645 18649657 chr3L 18650008 18650020 4 363 1.5 3.5 2.5 1.1 375 chr3L 18649645 intron MYPT-75D + chr3L 18649832 intron MYPT-75D + chr3L 18650020 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-491 898 chr3L 18701136 18701161 chr3L 18701217 18701249 10 85 2.5 1.0 1.8 3.6 113 chr3L 18701136 intergenic not near genes chr3L 18701192 intergenic not near genes chr3L 18701249 intergenic not near genes chr3L_10_18700001 chr3L_18700001 RAL-491 899 chr3L 18772417 18772441 chr3L 18781093 18781122 roo 10 8680 1.5 4.5 3.0 2.5 8705 chr3L 18772417 intron ftz-f1 - chr3L 18776770 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-491 900 chr3L 18896782 18896791 chr3L 18896898 18896913 4 117 0.5 2.5 1.5 1.6 131 chr3L 18896782 intron CG3902 - chr3L 18896848 intron CG3902 - chr3L 18896913 intron CG3902 - chr3L_4_18895001 chr3L_18895001 RAL-491 901 chr3L 18924483 18924506 chr3L 18924559 18924582 4 74 0.0 0.5 0.2 3.3 99 chr3L 18924483 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924582 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-491 902 chr3L 18933627 18933660 chr3L 18933720 18933753 5 94 1.0 2.0 1.5 2.0 126 chr3L 18933627 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-491 903 chr3L 18969549 18969577 chr3L 18969625 18969643 8 72 2.5 3.5 3.0 2.0 94 chr3L 18969549 intergenic not near genes chr3L 18969596 intergenic not near genes chr3L 18969643 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-491 904 chr3L 19008838 19008876 chr3L 19009177 19009211 jockey 10 334 3.0 6.5 4.8 1.7 373 chr3L 19008838 intron nkd - chr3L 19009024 intron nkd - chr3L 19009211 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-491 905 chr3L 19117040 19117075 chr3L 19124487 19124502 mdg1 16 7442 7.0 2.0 4.5 2.9 7462 chr3L 19117040 intron CG14082 - chr3L 19120771 intron CG14082 - chr3L 19124502 intron CG14082 - chr3L_16_19120001 chr3L_19120001 RAL-491 906 chr3L 19182386 19182418 chr3L 19182467 19182493 10 77 1.5 2.5 2.0 3.3 107 chr3L 19182386 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182493 intron fz2 - chr3L_10_19180001 chr3L_19180001 RAL-491 907 chr3L 19216518 19216531 chr3L 19216594 19216608 5 75 3.5 0.0 1.8 1.8 90 chr3L 19216518 intron fz2 - chr3L 19216563 intron fz2 - chr3L 19216608 intron fz2 - chr3L_5_19215001 chr3L_19215001 RAL-491 908 chr3L 19377796 19377827 chr3L 19378482 19378513 6 685 2.5 4.0 3.2 1.4 717 chr3L 19377796 intron CG32206 - chr3L 19378154 intron CG32206 - chr3L 19378513 intron CG32206 - chr3L_6_19375001 chr3L_19375001 RAL-491 909 chr3L 19430396 19430435 chr3L 19430474 19430507 16 75 0.5 1.5 1.0 8.0 111 chr3L 19430396 intergenic not near genes chr3L 19430452 intergenic not near genes chr3L 19430507 intergenic not near genes chr3L_16_19430001 chr3L_19430001 RAL-491 910 chr3L 19437019 19437053 chr3L 19437103 19437130 9 81 0.5 2.5 1.5 3.6 111 chr3L 19437019 intergenic not near genes chr3L 19437074 intergenic not near genes chr3L 19437130 intergenic not near genes chr3L_9_19435001 chr3L_19435001 RAL-491 911 chr3L 19462023 19462051 chr3L 19462138 19462146 11 112 2.5 3.0 2.8 2.9 123 chr3L 19462023 intergenic not near genes chr3L 19462084 intergenic not near genes chr3L 19462146 intergenic not near genes chr3L_11_19460001 chr3L_19460001 RAL-491 912 chr3L 19479370 19479379 chr3L 19479424 19479443 5 61 2.5 3.5 3.0 1.2 73 chr3L 19479370 intergenic not near genes chr3L 19479406 intergenic not near genes chr3L 19479443 intergenic not near genes chr3L_5_19475001 chr3L_19475001 RAL-491 913 chr3L 19493905 19493928 chr3L 19494263 19494286 4 357 3.0 2.0 2.5 1.1 381 chr3L 19493905 intron CG9449 - chr3L 19494096 intron CG9449 - chr3L 19494286 intron CG9449 - chr3L_4_19490001 chr3L_19490001 RAL-491 914 chr3L 19848503 19848531 chr3L 19857693 19857720 roo 9 9189 4.0 3.5 3.8 1.9 9217 chr3L 19848503 intron Papss + chr3L 19853112 intron Papss + chr3L 19857720 intron Papss + chr3L_9_19850001 chr3L_19850001 RAL-491 915 chr3L 19861823 19861843 chr3L 19863611 19863619 S-element 6 1782 1.5 1.0 1.2 2.7 1796 chr3L 19861823 5` UTR CR45433 + chr3L 19862721 intergenic not near genes chr3L 19863619 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-491 916 chr3L 19981214 19981229 chr3L 19981287 19981306 5 76 3.0 1.5 2.2 1.6 92 chr3L 19981214 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981306 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-491 917 chr3L 20061523 20061557 chr3L 20062182 20062216 15 657 3.0 6.5 4.8 2.6 693 chr3L 20061523 intron sNPF-R - chr3L 20061870 intron sNPF-R - chr3L 20062216 intron sNPF-R - chr3L_15_20060001 chr3L_20060001 RAL-491 918 chr3L 20096267 20096283 chr3L 20096375 20096391 6 105 1.5 2.5 2.0 2.0 124 chr3L 20096267 intergenic not near genes chr3L 20096329 intergenic not near genes chr3L 20096391 intergenic not near genes chr3L_6_20095001 chr3L_20095001 RAL-491 919 chr3L 20108221 20108232 chr3L 20108329 20108340 4 108 1.0 5.0 3.0 1.0 119 chr3L 20108221 intergenic Ir76b - chr3L 20108280 intergenic Ir76b - chr3L 20108340 intergenic Ir76b - chr3L_4_20105001 chr3L_20105001 RAL-491 920 chr3L 20113661 20113687 chr3L 20122918 20122944 roo 6 9256 3.0 2.5 2.8 1.6 9283 chr3L 20113661 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122944 intergenic not near genes chr3L_6_20115001 chr3L_20115001 RAL-491 921 chr3L 20143081 20143112 chr3L 20143161 20143192 11 80 4.5 3.5 4.0 2.2 111 chr3L 20143081 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143192 intergenic not near genes chr3L_11_20140001 chr3L_20140001 RAL-491 922 chr3L 20157974 20157999 chr3L 20158071 20158097 5 93 1.0 1.0 1.0 2.5 123 chr3L 20157974 intron CG42674 - chr3L 20158036 intron CG42674 - chr3L 20158097 intron CG42674 - chr3L_5_20155001 chr3L_20155001 RAL-491 923 chr3L 20257333 20257363 chr3L 20258453 20258481 pogo 12 1119 1.5 2.0 1.8 4.3 1148 chr3L 20257333 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258481 intron rdgC + chr3L_12_20255001 chr3L_20255001 RAL-491 924 chr3L 20283678 20283700 chr3L 20283762 20283784 8 84 3.5 3.5 3.5 1.8 106 chr3L 20283678 intron gogo - chr3L 20283731 intron gogo - chr3L 20283784 intron gogo - chr3L_8_20280001 chr3L_20280001 RAL-491 925 chr3L 20386952 20386969 chr3L 20387054 20387071 6 101 4.5 6.5 5.5 0.9 119 chr3L 20386952 intron fbl + chr3L 20387012 intron fbl + chr3L 20387071 intron fbl + chr3L_6_20385001 chr3L_20385001 RAL-491 926 chr3L 20402197 20402214 chr3L 20402276 20402295 5 81 0.5 1.0 0.8 2.8 98 chr3L 20402197 intergenic not near genes chr3L 20402246 intergenic not near genes chr3L 20402295 intergenic not near genes chr3L_5_20400001 chr3L_20400001 RAL-491 927 chr3L 20403589 20403601 chr3L 20403679 20403696 8 92 3.0 1.5 2.2 2.5 107 chr3L 20403589 intergenic not near genes chr3L 20403642 intergenic not near genes chr3L 20403696 intergenic not near genes chr3L_8_20400001 chr3L_20400001 RAL-491 928 chr3L 20476755 20476783 chr3L 20484354 20484382 springer 6 7598 1.5 1.0 1.2 2.7 7627 chr3L 20476755 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484382 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-491 929 chr3L 20490750 20490765 chr3L 20490894 20490910 5 145 1.5 0.0 0.8 2.8 160 chr3L 20490750 intron ZnT77C - chr3L 20490830 intron ZnT77C - chr3L 20490910 intron ZnT77C - chr3L_5_20490001 chr3L_20490001 RAL-491 930 chr3L 20536234 20536265 chr3L 20536431 20536446 11 192 1.0 1.5 1.2 5.0 212 chr3L 20536234 intron Rcd2 - chr3L 20536340 intron Rcd2 - chr3L 20536446 intron Rcd2 - chr3L_11_20535001 chr3L_20535001 RAL-491 931 chr3L 20573383 20573401 chr3L 20573451 20573460 7 69 1.5 1.5 1.5 2.8 77 chr3L 20573383 intergenic not near genes chr3L 20573422 intergenic not near genes chr3L 20573460 intergenic not near genes chr3L_7_20570001 chr3L_20570001 RAL-491 932 chr3L 20710766 20710793 chr3L 20710836 20710870 7 76 1.5 2.0 1.8 2.5 104 chr3L 20710766 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710870 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-491 933 chr3L 20821288 20821308 chr3L 20824741 20824777 NOF 4 3465 1.5 1.5 1.5 1.6 3489 chr3L 20821288 intron Pka-R1 + chr3L 20823032 intron Pka-R1 + chr3L 20824777 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-491 934 chr3L 20849276 20849300 chr3L 20849355 20849379 4 79 1.0 4.0 2.5 1.1 103 chr3L 20849276 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849379 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-491 935 chr3L 20862805 20862823 chr3L 20862889 20862904 4 83 6.5 4.0 5.2 0.6 99 chr3L 20862805 intron CG32432 - chr3L 20862854 intron CG32432 - chr3L 20862904 intron CG32432 - chr3L_4_20860001 chr3L_20860001 RAL-491 936 chr3L 20917092 20917122 chr3L 20917165 20917197 10 73 3.0 2.5 2.8 2.6 105 chr3L 20917092 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917197 intergenic not near genes chr3L_10_20915001 chr3L_20915001 RAL-491 937 chr3L 21082215 21082235 chr3L 21082292 21082292 12 76 2.5 2.0 2.2 3.8 77 chr3L 21082215 intron ko - chr3L 21082254 intron ko - chr3L 21082292 intron ko - chr3L_12_21080001 chr3L_21080001 RAL-491 938 chr3L 21151862 21151893 chr3L 21156946 21156977 flea 8 5084 4.0 2.5 3.2 1.9 5115 chr3L 21151862 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156977 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-491 939 chr3L 21306152 21306170 chr3L 21315309 21315328 roo 5 9155 5.5 2.0 3.8 1.0 9176 chr3L 21306152 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310740 intron Pc - chr3L 21315328 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-491 940 chr3L 21321094 21321122 chr3L 21321222 21321229 7 127 2.5 3.5 3.0 1.8 135 chr3L 21321094 intron Rab26 + chr3L 21321162 intron Rab26 + chr3L 21321229 intron Rab26 + chr3L_7_21320001 chr3L_21320001 RAL-491 941 chr3L 21415147 21415164 chr3L 21415225 21415247 8 82 4.0 7.0 5.5 1.2 100 chr3L 21415147 intron rgn + chr3L 21415197 intron rgn + chr3L 21415247 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-491 942 chr3L 21593894 21593905 chr3L 21593969 21593982 5 76 5.0 2.5 3.8 1.0 88 chr3L 21593894 intron TfAP-2 + chr3L 21593938 intron TfAP-2 + chr3L 21593982 intron TfAP-2 + chr3L_5_21590001 chr3L_21590001 RAL-491 943 chr3L 21699260 21699283 chr3L 21699541 21699549 6 278 2.5 3.0 2.8 1.6 289 chr3L 21699260 intron CG32447 - chr3L 21699404 intron CG32447 - chr3L 21699549 intron CG32447 - chr3L_6_21695001 chr3L_21695001 RAL-491 944 chr3L 21749318 21749343 chr3L 21754478 21754483 Doc 6 5156 2.0 3.0 2.5 1.7 5165 chr3L 21749318 intron Syn1 - chr3L 21751900 intron Syn1 - chr3L 21754483 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-491 945 chr3L 21767048 21767070 chr3L 21767129 21767151 11 79 1.5 4.5 3.0 2.8 103 chr3L 21767048 intron Syn1 - chr3L 21767100 intron Syn1 - chr3L 21767151 intron Syn1 - chr3L_11_21765001 chr3L_21765001 RAL-491 946 chr3L 21776683 21776702 chr3L 21776770 21776789 5 86 1.5 3.0 2.2 1.6 106 chr3L 21776683 intron,intron CG42689 +,CG42552 + chr3L 21776736 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-491 947 chr3L 22006763 22006775 chr3L 22006887 22006899 5 124 4.5 4.0 4.2 1.0 136 chr3L 22006763 intergenic not near genes chr3L 22006831 intergenic not near genes chr3L 22006899 intergenic not near genes chr3L_5_22005001 chr3L_22005001 RAL-491 948 chr3L 22034612 22034628 chr3L 22034714 22034730 5 102 2.5 4.0 3.2 1.2 118 chr3L 22034612 intergenic Oct-TyrR + chr3L 22034671 intergenic Oct-TyrR + chr3L 22034730 intergenic Oct-TyrR + chr3L_5_22030001 chr3L_22030001 RAL-491 949 chr3L 22122179 22122193 chr3L 22122522 22122526 4 340 3.5 2.5 3.0 1.0 347 chr3L 22122179 5` UTR CR45236 + chr3L 22122352 intergenic CR45236 +,CR45235 + chr3L 22122526 intergenic CR45235 +,CR45236 + chr3L_4_22120001 chr3L_22120001 RAL-491 950 chr3L 22137655 22137686 chr3L 22137742 22137772 7 83 1.5 0.0 0.8 3.9 117 chr3L 22137655 intron olf413 + chr3L 22137714 intron olf413 + chr3L 22137772 intron olf413 + chr3L_7_22135001 chr3L_22135001 RAL-491 951 chr3L 22241291 22241320 chr3L 22241373 22241373 5 69 1.5 1.0 1.2 2.3 82 chr3L 22241291 intron olf413 + chr3L 22241332 intron olf413 + chr3L 22241373 intron olf413 + chr3L_5_22240001 chr3L_22240001 RAL-491 952 chr3L 22333058 22333074 chr3L 22333122 22333125 7 68 1.0 3.0 2.0 2.3 67 chr3L 22333058 intron Ten-m - chr3L 22333092 intron Ten-m - chr3L 22333125 intron Ten-m - chr3L_7_22330001 chr3L_22330001 RAL-491 953 chr3L 22447206 22447233 chr3L 22447296 22447323 7 89 2.5 1.5 2.0 2.3 117 chr3L 22447206 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-491 954 chr3L 22523537 22523562 chr3L 22523711 22523712 6 162 3.0 3.0 3.0 1.5 175 chr3L 22523537 intergenic not near genes chr3L 22523624 intergenic not near genes chr3L 22523712 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-491 955 chr3L 22577619 22577653 chr3L 22582402 22582421 Doc 15 4779 4.0 6.5 5.2 2.4 4802 chr3L 22577619 intergenic not near genes chr3L 22580020 intergenic not near genes chr3L 22582421 3` UTR CG14459 - chr3L_15_22580001 chr3L_22580001 RAL-491 956 chr3L 22617201 22617219 chr3L 22624650 22624671 blood 9 7451 2.5 1.5 2.0 3.0 7470 chr3L 22617201 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624671 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-491 957 chr3L 22761396 22761420 chr3L 22766819 22766839 Ivk 6 5428 2.0 3.0 2.5 1.7 5443 chr3L 22761396 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766839 intron SPoCk + chr3L_6_22760001 chr3L_22760001 RAL-491 958 chr3L 22838600 22838618 chr3L 22838678 22838698 4 79 4.0 6.0 5.0 0.7 98 chr3L 22838600 intergenic CG11226 + chr3L 22838649 intergenic CG11226 + chr3L 22838698 intergenic not near genes chr3L_4_22835001 chr3L_22835001 RAL-491 959 chr3L 22865980 22865998 chr3L 22867113 22867130 Doc 4 1130 4.5 2.5 3.5 0.9 1150 chr3L 22865980 intron CG33170 + chr3L 22866555 intron CG33170 + chr3L 22867130 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-491 960 chr3L 22909030 22909050 chr3L 22909109 22909138 9 86 3.5 6.0 4.8 1.6 108 chr3L 22909030 intergenic CR45661 + chr3L 22909084 intergenic CR45661 + chr3L 22909138 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-491 961 chr3L 22974623 22974647 chr3L 22974794 22974818 5 170 3.5 2.0 2.8 1.3 195 chr3L 22974623 intergenic not near genes chr3L 22974720 intergenic not near genes chr3L 22974818 intergenic not near genes chr3L_5_22970001 chr3L_22970001 RAL-491 962 chr3L 22989876 22989891 chr3L 22996839 22996865 297 4 6970 2.0 3.0 2.5 1.1 6989 chr3L 22989876 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996865 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-491 963 chr3L 23436988 23437014 chr3L 23437132 23437157 12 143 3.0 1.5 2.2 3.8 169 chr3L 23436988 intergenic not near genes chr3L 23437072 intergenic not near genes chr3L 23437157 intergenic not near genes chr3L_12_23435001 chr3L_23435001 RAL-491 964 chr3L 27413055 27413063 chr3L 27413116 27413119 5 62 0.5 5.5 3.0 1.2 64 chr3L 27413055 intron Dbp80 + chr3L 27413087 intron Dbp80 + chr3L 27413119 intron Dbp80 + chr3L_5_27410001 chr3L_27410001 RAL-491 965 chr3R 2556881 2556910 chr3R 2557629 2557643 9 737 25.0 11.0 18.0 0.5 762 chr3R 2556881 intron CG41056 - chr3R 2557262 intron CG41056 - chr3R 2557643 intron CG41056 - chr3R_9_2555001 chr3R_2555001 RAL-491 966 chr3R 4161547 4161570 chr3R 4161615 4161647 6 74 2.0 3.5 2.8 1.6 100 chr3R 4161547 3` UTR CG40198 - chr3R 4161597 exon CG40198 - chr3R 4161647 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-491 967 chr3R 4206075 4206103 chr3R 4211645 4211669 mdg3 7 5572 1.0 1.0 1.0 3.5 5594 chr3R 4206075 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211669 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-491 968 chr3R 4366757 4366776 chr3R 4375140 4375159 roo 8 8383 2.5 2.0 2.2 2.5 8402 chr3R 4366757 3` UTR CG1090 + chr3R 4370958 intergenic not near genes chr3R 4375159 5` UTR CR44922 + chr3R_8_4370001 chr3R_4370001 RAL-491 969 chr3R 4408408 4408442 chr3R 4412712 4412745 Juan 7 4302 2.0 5.5 3.8 1.5 4337 chr3R 4408408 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412745 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-491 970 chr3R 4454190 4454208 chr3R 4454257 4454286 8 75 2.5 0.0 1.2 3.6 96 chr3R 4454190 intron,5` UTR CG31522 -,CR43629 + chr3R 4454238 intron,5` UTR CG31522 -,CR43629 + chr3R 4454286 intron,5` UTR CG31522 -,CR43629 + chr3R_8_4450001 chr3R_4450001 RAL-491 971 chr3R 4609551 4609568 chr3R 4610709 4610731 1360 6 1163 4.5 4.0 4.2 1.2 1180 chr3R 4609551 intergenic not near genes chr3R 4610141 intergenic not near genes chr3R 4610731 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-491 972 chr3R 4680708 4680732 chr3R 4680786 4680804 5 77 3.0 1.0 2.0 1.7 96 chr3R 4680708 intron CG43427 + chr3R 4680756 intron CG43427 + chr3R 4680804 5` UTR CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-491 973 chr3R 4682761 4682787 chr3R 4683119 4683144 4 354 3.5 2.0 2.8 1.1 383 chr3R 4682761 intron CG43427 + chr3R 4682952 intron CG43427 + chr3R 4683144 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-491 974 chr3R 4753239 4753267 chr3R 4757542 4757569 F-element 9 4301 5.5 5.0 5.2 1.5 4330 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-491 975 chr3R 4796120 4796149 chr3R 4796237 4796248 4 111 2.5 2.0 2.2 1.2 128 chr3R 4796120 intron ctrip - chr3R 4796184 intron ctrip - chr3R 4796248 intron ctrip - chr3R_4_4795001 chr3R_4795001 RAL-491 976 chr3R 4963438 4963459 chr3R 4963547 4963580 5 115 2.5 4.5 3.5 1.1 142 chr3R 4963438 intergenic not near genes chr3R 4963509 intergenic not near genes chr3R 4963580 intergenic not near genes chr3R_5_4960001 chr3R_4960001 RAL-491 977 chr3R 5045844 5045876 chr3R 5052945 5052976 HMS-Beagle 6 7101 2.5 2.0 2.2 1.9 7132 chr3R 5045844 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-491 978 chr3R 5067986 5068013 chr3R 5073501 5073527 mdg3 12 5515 4.5 1.5 3.0 3.0 5541 chr3R 5067986 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_12_5070001 chr3R_5070001 RAL-491 979 chr3R 5271164 5271186 chr3R 5271243 5271265 12 78 0.0 4.0 2.0 4.0 101 chr3R 5271164 intergenic not near genes chr3R 5271214 intergenic not near genes chr3R 5271265 intergenic not near genes chr3R_12_5270001 chr3R_5270001 RAL-491 980 chr3R 5278098 5278122 chr3R 5278171 5278201 12 76 2.5 5.0 3.8 2.5 103 chr3R 5278098 intron mtd - chr3R 5278150 intron mtd - chr3R 5278201 intron mtd - chr3R_12_5275001 chr3R_5275001 RAL-491 981 chr3R 5338401 5338432 chr3R 5343571 5343591 Rt1c 11 5174 2.0 6.0 4.0 2.2 5190 chr3R 5338401 intron mtd - chr3R 5340996 intron mtd - chr3R 5343591 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-491 982 chr3R 5395916 5395945 chr3R 5397833 5397862 13 1918 21.0 22.5 21.8 0.6 1946 chr3R 5395916 intron CG1172 + chr3R 5396889 3` UTR CG1172 + chr3R 5397862 3` UTR,exon CG1172 +,Or83a - chr3R_13_5395001 chr3R_5395001 RAL-491 983 chr3R 5400510 5400539 chr3R 5400593 5400622 13 83 5.5 1.0 3.2 3.1 112 chr3R 5400510 intergenic CG2663 - chr3R 5400566 intergenic CG2663 - chr3R 5400622 3` UTR CG2663 - chr3R_13_5400001 chr3R_5400001 RAL-491 984 chr3R 5404990 5404998 chr3R 5405049 5405075 4 69 1.5 1.5 1.5 1.6 85 chr3R 5404990 intergenic not near genes chr3R 5405032 intergenic not near genes chr3R 5405075 intergenic not near genes chr3R_4_5405001 chr3R_5405001 RAL-491 985 chr3R 5429916 5429952 chr3R 5430069 5430078 4 140 2.5 4.5 3.5 0.9 162 chr3R 5429916 intron CG14669 + chr3R 5429997 intron CG14669 + chr3R 5430078 intron CG14669 + chr3R_4_5430001 chr3R_5430001 RAL-491 986 chr3R 5436920 5436951 chr3R 5437005 5437028 7 84 0.5 2.5 1.5 2.8 108 chr3R 5436920 intron CG14669 + chr3R 5436974 intron CG14669 + chr3R 5437028 intron CG14669 + chr3R_7_5435001 chr3R_5435001 RAL-491 987 chr3R 5445973 5445991 chr3R 5452432 5452451 Burdock 5 6459 3.0 4.0 3.5 1.1 6478 chr3R 5445973 intron CG14669 + chr3R 5449212 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-491 988 chr3R 5680785 5680819 chr3R 5680869 5680903 7 83 3.5 2.5 3.0 1.8 118 chr3R 5680785 3` UTR Rab23 - chr3R 5680844 3` UTR Rab23 - chr3R 5680903 3` UTR Rab23 - chr3R_7_5680001 chr3R_5680001 RAL-491 989 chr3R 5688799 5688814 chr3R 5688906 5688934 6 113 3.0 3.5 3.2 1.4 135 chr3R 5688799 intron plx + chr3R 5688866 intron plx + chr3R 5688934 intron plx + chr3R_6_5685001 chr3R_5685001 RAL-491 990 chr3R 5746024 5746040 chr3R 5746254 5746280 pogo 5 236 2.5 3.0 2.8 1.3 256 chr3R 5746024 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746280 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-491 991 chr3R 5769233 5769245 chr3R 5769331 5769337 6 97 7.5 1.5 4.5 1.1 104 chr3R 5769233 intron CG2082 - chr3R 5769285 intron CG2082 - chr3R 5769337 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-491 992 chr3R 5769250 5769263 chr3R 5769330 5769354 6 92 3.5 1.5 2.5 1.7 104 chr3R 5769250 intron CG2082 - chr3R 5769302 intron CG2082 - chr3R 5769354 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-491 993 chr3R 5809112 5809142 chr3R 5809362 5809392 pogo 5 248 2.5 6.5 4.5 0.9 280 chr3R 5809112 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809392 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-491 994 chr3R 5822379 5822412 chr3R 5823544 5823579 1360 7 1164 5.5 4.0 4.8 1.2 1200 chr3R 5822379 3` UTR CG2023 - chr3R 5822979 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-491 995 chr3R 5927563 5927587 chr3R 5927801 5927825 pogo 6 237 1.5 1.0 1.2 2.7 262 chr3R 5927563 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927825 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-491 996 chr3R 5988115 5988146 chr3R 5988198 5988230 9 80 2.5 5.0 3.8 1.9 115 chr3R 5988115 intergenic not near genes chr3R 5988172 intergenic not near genes chr3R 5988230 intergenic not near genes chr3R_9_5985001 chr3R_5985001 RAL-491 997 chr3R 6015972 6015995 chr3R 6024446 6024476 Tirant 8 8475 0.0 3.5 1.8 2.9 8504 chr3R 6015972 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-491 998 chr3R 6124240 6124258 chr3R 6124314 6124342 8 80 1.0 3.5 2.2 2.5 102 chr3R 6124240 3` UTR Vha14-2 + chr3R 6124291 3` UTR Vha14-2 + chr3R 6124342 3` UTR Vha14-2 + chr3R_8_6120001 chr3R_6120001 RAL-491 999 chr3R 6158508 6158542 chr3R 6167091 6167123 Tirant 5 8582 2.5 2.0 2.2 1.6 8615 chr3R 6158508 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-491 1000 chr3R 6175173 6175203 chr3R 6182445 6182475 HMS-Beagle2 7 7271 2.0 2.5 2.2 2.2 7302 chr3R 6175173 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182475 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-491 1001 chr3R 6187739 6187770 chr3R 6195518 6195547 9 7779 12.5 9.5 11.0 0.8 7808 chr3R 6187739 intron NPFR + chr3R 6191643 intron NPFR + chr3R 6195547 intergenic NPFR + chr3R_9_6190001 chr3R_6190001 RAL-491 1002 chr3R 6206283 6206320 chr3R 6206498 6206525 BS 12 209 4.0 3.5 3.8 2.5 242 chr3R 6206283 exon Osi24 + chr3R 6206404 intron Osi24 + chr3R 6206525 intron Osi24 + chr3R_12_6205001 chr3R_6205001 RAL-491 1003 chr3R 6222306 6222339 chr3R 6222387 6222419 9 79 2.5 1.5 2.0 3.0 113 chr3R 6222306 intergenic not near genes chr3R 6222362 intergenic not near genes chr3R 6222419 intergenic not near genes chr3R_9_6220001 chr3R_6220001 RAL-491 1004 chr3R 6232270 6232275 chr3R 6232351 6232356 4 81 5.0 0.0 2.5 1.1 86 chr3R 6232270 intergenic not near genes chr3R 6232313 intergenic not near genes chr3R 6232356 intergenic not near genes chr3R_4_6230001 chr3R_6230001 RAL-491 1005 chr3R 6428820 6428824 chr3R 6428922 6428926 4 102 3.5 2.0 2.8 1.1 106 chr3R 6428820 intron gpp + chr3R 6428873 intron gpp + chr3R 6428926 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-491 1006 chr3R 6428825 6428844 chr3R 6428912 6428946 6 98 1.0 2.0 1.5 2.4 121 chr3R 6428825 intron gpp + chr3R 6428886 intron gpp + chr3R 6428946 intron gpp + chr3R_6_6425001 chr3R_6425001 RAL-491 1007 chr3R 6461578 6461613 chr3R 6461659 6461693 11 79 2.0 3.0 2.5 3.1 115 chr3R 6461578 intergenic not near genes chr3R 6461636 intergenic not near genes chr3R 6461693 intergenic not near genes chr3R_11_6460001 chr3R_6460001 RAL-491 1008 chr3R 6479943 6479970 chr3R 6480016 6480041 5 73 1.0 1.5 1.2 2.3 98 chr3R 6479943 intron CG15186 + chr3R 6479992 intron CG15186 + chr3R 6480041 intron CG15186 + chr3R_5_6475001 chr3R_6475001 RAL-491 1009 chr3R 6523318 6523349 chr3R 6523693 6523715 6 374 1.0 4.5 2.8 1.6 397 chr3R 6523318 intergenic not near genes chr3R 6523516 intergenic not near genes chr3R 6523715 intergenic not near genes chr3R_6_6520001 chr3R_6520001 RAL-491 1010 chr3R 6532109 6532131 chr3R 6532483 6532505 6 372 5.5 3.5 4.5 1.1 396 chr3R 6532109 intron dpr11 - chr3R 6532307 intron dpr11 - chr3R 6532505 intron dpr11 - chr3R_6_6530001 chr3R_6530001 RAL-491 1011 chr3R 6534037 6534042 chr3R 6534119 6534130 5 86 0.5 4.0 2.2 1.6 93 chr3R 6534037 intron dpr11 - chr3R 6534084 intron dpr11 - chr3R 6534130 intron dpr11 - chr3R_5_6530001 chr3R_6530001 RAL-491 1012 chr3R 6689339 6689371 chr3R 6689421 6689452 5 80 2.5 1.0 1.8 1.8 113 chr3R 6689339 intergenic Ccp84Af - chr3R 6689396 intergenic Ccp84Af - chr3R 6689452 intergenic Ccp84Af - chr3R_5_6685001 chr3R_6685001 RAL-491 1013 chr3R 6725161 6725186 chr3R 6725296 6725319 5 132 1.0 5.0 3.0 1.2 158 chr3R 6725161 intron pb - chr3R 6725240 intron pb - chr3R 6725319 intron pb - chr3R_5_6725001 chr3R_6725001 RAL-491 1014 chr3R 6737498 6737530 chr3R 6739284 6739312 Doc 4 1785 0.5 3.5 2.0 1.3 1814 chr3R 6737498 intron pb - chr3R 6738405 intron pb - chr3R 6739312 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-491 1015 chr3R 6828026 6828039 chr3R 6828102 6828115 7 74 4.0 2.0 3.0 1.8 89 chr3R 6828026 intron Scr - chr3R 6828070 intron Scr - chr3R 6828115 intron Scr - chr3R_7_6825001 chr3R_6825001 RAL-491 1016 chr3R 6862221 6862253 chr3R 6862308 6862340 6 84 2.5 0.5 1.5 2.4 119 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862340 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-491 1017 chr3R 6912102 6912130 chr3R 6912213 6912241 7 111 4.0 0.0 2.0 2.3 139 chr3R 6912102 intron Antp - chr3R 6912172 intron Antp - chr3R 6912241 intron Antp - chr3R_7_6910001 chr3R_6910001 RAL-491 1018 chr3R 6961180 6961201 chr3R 6961259 6961279 4 78 2.0 2.0 2.0 1.3 99 chr3R 6961180 intron Antp - chr3R 6961230 intron Antp - chr3R 6961279 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-491 1019 chr3R 7092793 7092818 chr3R 7093352 7093380 14 561 2.5 5.5 4.0 2.8 587 chr3R 7092793 3` UTR CR43685 - chr3R 7093086 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_14_7090001 chr3R_7090001 RAL-491 1020 chr3R 7103289 7103314 chr3R 7103364 7103387 9 71 2.0 2.5 2.2 2.8 98 chr3R 7103289 intron Alh - chr3R 7103338 intron Alh - chr3R 7103387 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-491 1021 chr3R 7385594 7385615 chr3R 7385657 7385657 7 66 2.0 3.5 2.8 1.8 63 chr3R 7385594 intergenic not near genes chr3R 7385626 intergenic not near genes chr3R 7385657 intergenic not near genes chr3R_7_7385001 chr3R_7385001 RAL-491 1022 chr3R 7464691 7464719 chr3R 7464776 7464805 9 84 5.0 1.0 3.0 2.2 114 chr3R 7464691 intergenic not near genes chr3R 7464748 intergenic not near genes chr3R 7464805 intergenic not near genes chr3R_9_7460001 chr3R_7460001 RAL-491 1023 chr3R 7552967 7552997 chr3R 7553054 7553085 8 84 1.5 2.0 1.8 2.9 118 chr3R 7552967 intergenic not near genes chr3R 7553026 intergenic not near genes chr3R 7553085 intergenic not near genes chr3R_8_7550001 chr3R_7550001 RAL-491 1024 chr3R 7677918 7677944 chr3R 7678031 7678047 6 111 1.5 3.5 2.5 1.7 129 chr3R 7677918 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678047 intron Nlg1 + chr3R_6_7675001 chr3R_7675001 RAL-491 1025 chr3R 7694582 7694604 chr3R 7713641 7713665 invader3 5 19059 0.0 4.0 2.0 1.7 19083 chr3R 7694582 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713665 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-491 1026 chr3R 7729468 7729499 chr3R 7737406 7737437 Stalker2 5 7937 1.5 3.0 2.2 1.6 7969 chr3R 7729468 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-491 1027 chr3R 7772273 7772298 chr3R 7772516 7772539 8 245 0.0 4.5 2.2 2.5 266 chr3R 7772273 intergenic not near genes chr3R 7772406 intergenic not near genes chr3R 7772539 intergenic not near genes chr3R_8_7770001 chr3R_7770001 RAL-491 1028 chr3R 7973315 7973346 chr3R 7974377 7974406 1360 5 1059 1.5 2.5 2.0 1.7 1091 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974406 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-491 1029 chr3R 8094414 8094437 chr3R 8099719 8099742 Transpac 6 5305 2.5 1.5 2.0 2.0 5328 chr3R 8094414 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099742 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-491 1030 chr3R 8144776 8144790 chr3R 8144853 8144861 4 76 2.0 1.5 1.8 1.4 85 chr3R 8144776 intergenic not near genes chr3R 8144818 intergenic not near genes chr3R 8144861 intergenic not near genes chr3R_4_8140001 chr3R_8140001 RAL-491 1031 chr3R 8207555 8207588 chr3R 8208399 8208420 F-element 4 836 2.5 2.5 2.5 1.1 865 chr3R 8207555 intergenic not near genes chr3R 8207988 intergenic not near genes chr3R 8208420 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-491 1032 chr3R 8303583 8303595 chr3R 8305317 8305335 4 1738 13.5 14.0 13.8 0.3 1752 chr3R 8303583 exon nac - chr3R 8304459 3` UTR Sgt1 - chr3R 8305335 intergenic Sgt1 - chr3R_4_8300001 chr3R_8300001 RAL-491 1033 chr3R 8339246 8339247 chr3R 21907534 21907536 18 13568288 17.0 19.0 18.0 0.9 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 RAL-491 1034 chr3R 8363226 8363243 chr3R 8363281 8363304 4 62 7.5 2.0 4.8 0.7 78 chr3R 8363226 exon CG7963 + chr3R 8363265 exon CG7963 + chr3R 8363304 exon CG7963 + chr3R_4_8360001 chr3R_8360001 RAL-491 1035 chr3R 8403015 8403023 chr3R 8412181 8412189 roo 4 9166 8.5 4.5 6.5 0.5 9174 chr3R 8403015 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412189 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-491 1036 chr3R 8403025 8403040 chr3R 8412174 8412206 roo 8 9158 6.0 4.0 5.0 1.3 9181 chr3R 8403025 intron CG45263 - chr3R 8407616 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-491 1037 chr3R 8526516 8526537 chr3R 8526593 8526607 5 75 3.0 1.5 2.2 1.6 91 chr3R 8526516 3` UTR CG31259 + chr3R 8526562 3` UTR CG31259 + chr3R 8526607 3` UTR CG31259 + chr3R_5_8525001 chr3R_8525001 RAL-491 1038 chr3R 8537821 8537842 chr3R 8537904 8537904 10 80 2.5 2.0 2.2 3.1 83 chr3R 8537821 intergenic not near genes chr3R 8537862 intergenic not near genes chr3R 8537904 intergenic not near genes chr3R_10_8535001 chr3R_8535001 RAL-491 1039 chr3R 8570480 8570510 chr3R 8575114 8575146 HMS-Beagle 10 4633 4.0 1.5 2.8 2.6 4666 chr3R 8570480 intergenic not near genes chr3R 8572813 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_10_8570001 chr3R_8570001 RAL-491 1040 chr3R 8576160 8576180 chr3R 8576331 8576351 10 170 5.5 2.0 3.8 2.1 191 chr3R 8576160 intergenic not near genes chr3R 8576256 intergenic not near genes chr3R 8576351 intergenic not near genes chr3R_10_8575001 chr3R_8575001 RAL-491 1041 chr3R 8601769 8601800 chr3R 8610922 8610937 roo 6 9146 2.5 6.0 4.2 1.2 9168 chr3R 8601769 intron 5-HT2B + chr3R 8606353 intron 5-HT2B + chr3R 8610937 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-491 1042 chr3R 8669334 8669363 chr3R 8669425 8669454 7 90 2.5 2.5 2.5 2.0 120 chr3R 8669334 intron CG8036 + chr3R 8669394 intron CG8036 + chr3R 8669454 intron CG8036 + chr3R_7_8665001 chr3R_8665001 RAL-491 1043 chr3R 8707355 8707385 chr3R 8709796 8709826 jockey 11 2439 3.0 5.0 4.0 2.2 2471 chr3R 8707355 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-491 1044 chr3R 8798652 8798683 chr3R 8798735 8798766 4 82 2.5 3.0 2.8 1.1 114 chr3R 8798652 intron,intron Pif1A -,Pif1B - chr3R 8798709 intron,intron Pif1A -,Pif1B - chr3R 8798766 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-491 1045 chr3R 9082051 9082070 chr3R 9082136 9082163 4 90 1.5 1.0 1.2 1.8 112 chr3R 9082051 intron pum - chr3R 9082107 intron pum - chr3R 9082163 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-491 1046 chr3R 9087318 9087350 chr3R 9087397 9087429 8 78 2.0 2.0 2.0 2.7 111 chr3R 9087318 intron pum - chr3R 9087374 intron pum - chr3R 9087429 intron pum - chr3R_8_9085001 chr3R_9085001 RAL-491 1047 chr3R 9141148 9141168 chr3R 9141227 9141252 5 83 1.0 2.5 1.8 1.8 104 chr3R 9141148 intron pum - chr3R 9141200 intron pum - chr3R 9141252 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-491 1048 chr3R 9197754 9197783 chr3R 9197841 9197867 10 83 4.0 1.5 2.8 2.6 113 chr3R 9197754 intron pum - chr3R 9197810 intron pum - chr3R 9197867 intron pum - chr3R_10_9195001 chr3R_9195001 RAL-491 1049 chr3R 9278779 9278811 chr3R 9284039 9284071 Rt1a 14 5258 7.5 5.5 6.5 1.9 5292 chr3R 9278779 intergenic not near genes chr3R 9281425 intergenic not near genes chr3R 9284071 intergenic not near genes chr3R_14_9280001 chr3R_9280001 RAL-491 1050 chr3R 9301177 9301210 chr3R 9301265 9301297 8 82 3.0 5.0 4.0 1.6 120 chr3R 9301177 intron CG8861 - chr3R 9301237 intron CG8861 - chr3R 9301297 intron CG8861 - chr3R_8_9300001 chr3R_9300001 RAL-491 1051 chr3R 9319580 9319603 chr3R 9320006 9320032 jockey 9 429 2.0 2.5 2.2 2.8 452 chr3R 9319580 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320032 intron CG8861 - chr3R_9_9315001 chr3R_9315001 RAL-491 1052 chr3R 9361814 9361835 chr3R 9362055 9362074 pogo 5 240 1.0 1.0 1.0 2.5 260 chr3R 9361814 3` UTR CG45050 + chr3R 9361944 3` UTR CG45050 + chr3R 9362074 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-491 1053 chr3R 9364143 9364159 chr3R 9364684 9364714 5 552 2.5 1.5 2.0 1.7 571 chr3R 9364143 exon CG18473 + chr3R 9364428 exon CG18473 + chr3R 9364714 exon CG18473 + chr3R_5_9360001 chr3R_9360001 RAL-491 1054 chr3R 9601469 9601489 chr3R 9601587 9601607 7 115 2.5 0.5 1.5 2.8 138 chr3R 9601469 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601607 intron CG8312 + chr3R_7_9600001 chr3R_9600001 RAL-491 1055 chr3R 9610856 9610871 chr3R 9610996 9611013 4 141 1.0 2.5 1.8 1.4 157 chr3R 9610856 intron CG8312 + chr3R 9610934 intron CG8312 + chr3R 9611013 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-491 1056 chr3R 9620956 9620956 chr3R 21907535 21907536 5 12286579 14.0 19.5 16.8 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-491 1057 chr3R 9703807 9703840 chr3R 9703884 9703917 10 76 1.0 2.5 1.8 3.6 110 chr3R 9703807 intron Unc-115a - chr3R 9703862 intron Unc-115a - chr3R 9703917 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 RAL-491 1058 chr3R 9836874 9836903 chr3R 9836962 9836988 10 83 1.0 3.0 2.0 3.3 114 chr3R 9836874 intron Teh1 - chr3R 9836931 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_10_9835001 chr3R_9835001 RAL-491 1059 chr3R 9874174 9874197 chr3R 9874252 9874263 4 69 1.5 2.5 2.0 1.3 89 chr3R 9874174 intergenic not near genes chr3R 9874218 intergenic Glut4EF + chr3R 9874263 intergenic Glut4EF + chr3R_4_9870001 chr3R_9870001 RAL-491 1060 chr3R 10174145 10174154 chr3R 10174224 10174236 4 81 3.0 7.0 5.0 0.7 91 chr3R 10174145 intron CG12814 - chr3R 10174190 intron CG12814 - chr3R 10174236 intron CG12814 - chr3R_4_10170001 chr3R_10170001 RAL-491 1061 chr3R 10231800 10231811 chr3R 10237377 10237386 mdg3 5 5576 0.5 2.0 1.2 2.3 5586 chr3R 10231800 intron CG42795 + chr3R 10234593 intron CG42795 + chr3R 10237386 intron CG42795 + chr3R_5_10230001 chr3R_10230001 RAL-491 1062 chr3R 10275564 10275578 chr3R 10275641 10275655 4 77 0.5 3.5 2.0 1.3 91 chr3R 10275564 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275655 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-491 1063 chr3R 10306951 10306986 chr3R 10312210 10312245 9 5259 24.5 11.5 18.0 0.5 5294 chr3R 10306951 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312245 3` UTR Bruce - chr3R_9_10305001 chr3R_10305001 RAL-491 1064 chr3R 10593451 10593460 chr3R 10593514 10593542 5 71 2.5 0.5 1.5 2.0 91 chr3R 10593451 intron hth - chr3R 10593496 intron hth - chr3R 10593542 intron hth - chr3R_5_10590001 chr3R_10590001 RAL-491 1065 chr3R 10641590 10641623 chr3R 10641670 10641703 10 77 3.5 2.0 2.8 2.6 113 chr3R 10641590 5` UTR CR44018 + chr3R 10641646 5` UTR CR44018 + chr3R 10641703 5` UTR CR44018 + chr3R_10_10640001 chr3R_10640001 RAL-491 1066 chr3R 10651811 10651840 chr3R 10651910 10651936 7 95 2.5 2.5 2.5 2.0 125 chr3R 10651811 intergenic not near genes chr3R 10651874 intergenic not near genes chr3R 10651936 intergenic not near genes chr3R_7_10650001 chr3R_10650001 RAL-491 1067 chr3R 10727649 10727656 chr3R 10727725 10727736 5 77 6.5 5.0 5.8 0.7 87 chr3R 10727649 intergenic not near genes chr3R 10727692 intergenic not near genes chr3R 10727736 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-491 1068 chr3R 10727658 10727676 chr3R 10727723 10727747 7 72 3.0 4.5 3.8 1.5 89 chr3R 10727658 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727747 intergenic not near genes chr3R_7_10725001 chr3R_10725001 RAL-491 1069 chr3R 10870866 10870901 chr3R 10870946 10870968 9 76 2.0 1.5 1.8 3.2 102 chr3R 10870866 intergenic Fdh -,Tsp86D + chr3R 10870917 3` UTR Fdh - chr3R 10870968 3` UTR Fdh - chr3R_9_10870001 chr3R_10870001 RAL-491 1070 chr3R 10899451 10899482 chr3R 10899528 10899532 6 72 3.5 4.0 3.8 1.2 81 chr3R 10899451 intergenic not near genes chr3R 10899492 intergenic not near genes chr3R 10899532 intergenic not near genes chr3R_6_10895001 chr3R_10895001 RAL-491 1071 chr3R 10927291 10927304 chr3R 10927608 10927632 5 322 3.0 2.5 2.8 1.3 341 chr3R 10927291 intergenic not near genes chr3R 10927462 intergenic not near genes chr3R 10927632 intergenic not near genes chr3R_5_10925001 chr3R_10925001 RAL-491 1072 chr3R 10963560 10963589 chr3R 10963654 10963682 8 94 2.0 5.0 3.5 1.8 122 chr3R 10963560 intergenic not near genes chr3R 10963621 intergenic not near genes chr3R 10963682 intergenic not near genes chr3R_8_10960001 chr3R_10960001 RAL-491 1073 chr3R 10982730 10982754 chr3R 10982805 10982837 6 74 2.5 4.5 3.5 1.3 107 chr3R 10982730 intron CG34114 + chr3R 10982784 intron CG34114 + chr3R 10982837 intron CG34114 + chr3R_6_10980001 chr3R_10980001 RAL-491 1074 chr3R 11085468 11085489 chr3R 11085544 11085566 4 77 0.0 1.5 0.8 2.2 98 chr3R 11085468 3` UTR CR44940 - chr3R 11085517 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-491 1075 chr3R 11102325 11102355 chr3R 11102406 11102410 9 77 4.5 3.5 4.0 1.8 85 chr3R 11102325 intergenic not near genes chr3R 11102368 intergenic not near genes chr3R 11102410 intergenic not near genes chr3R_9_11100001 chr3R_11100001 RAL-491 1076 chr3R 11197988 11198018 chr3R 11198086 11198096 6 95 3.0 3.0 3.0 1.5 108 chr3R 11197988 intron cu + chr3R 11198042 intron cu + chr3R 11198096 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-491 1077 chr3R 11285902 11285932 chr3R 11286088 11286118 11 186 5.0 0.5 2.8 2.9 216 chr3R 11285902 intron CR31386 - chr3R 11286010 intron CR31386 - chr3R 11286118 intron CR31386 - chr3R_11_11285001 chr3R_11285001 RAL-491 1078 chr3R 11379234 11379262 chr3R 11388389 11388417 roo 7 9153 5.5 2.5 4.0 1.4 9183 chr3R 11379234 intron pros + chr3R 11383826 intron pros + chr3R 11388417 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-491 1079 chr3R 11442338 11442362 chr3R 11442523 11442540 6 180 7.0 6.0 6.5 0.8 202 chr3R 11442338 intron,intron sals -,CG17230 + chr3R 11442439 intron,intron sals -,CG17230 + chr3R 11442540 intron,intron sals -,CG17230 + chr3R_6_11440001 chr3R_11440001 RAL-491 1080 chr3R 11710209 11710232 chr3R 11710287 11710309 5 73 4.0 3.5 3.8 1.0 100 chr3R 11710209 intergenic not near genes chr3R 11710259 intergenic not near genes chr3R 11710309 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-491 1081 chr3R 11725969 11725982 chr3R 11728371 11728402 6 2414 2.5 5.5 4.0 1.2 2433 chr3R 11725969 intron CG12594 + chr3R 11727186 5` UTR CG12594 + chr3R 11728402 intron CG12594 + chr3R_6_11725001 chr3R_11725001 RAL-491 1082 chr3R 11841059 11841100 chr3R 11846250 11846273 BS 8 5184 1.0 1.5 1.2 3.6 5214 chr3R 11841059 intron CG6959 - chr3R 11843666 intron CG6959 - chr3R 11846273 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-491 1083 chr3R 11853441 11853469 chr3R 11853586 11853631 5 149 1.0 0.0 0.5 3.3 190 chr3R 11853441 intron CG6959 - chr3R 11853536 intron CG6959 - chr3R 11853631 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-491 1084 chr3R 11881895 11881909 chr3R 11886608 11886632 5 4715 30.0 27.0 28.5 0.2 4737 chr3R 11881895 exon CG6962 - chr3R 11884264 intron,exon CG31368 +,mthl5 - chr3R 11886632 intron,exon CG31368 +,mthl5 - chr3R_5_11880001 chr3R_11880001 RAL-491 1085 chr3R 11957856 11957875 chr3R 11958138 11958158 S-element 4 282 1.0 0.0 0.5 2.7 302 chr3R 11957856 intergenic not near genes chr3R 11958007 intergenic not near genes chr3R 11958158 intergenic not near genes chr3R_4_11955001 chr3R_11955001 RAL-491 1086 chr3R 12045186 12045201 chr3R 12045260 12045263 7 72 1.0 2.5 1.8 2.5 77 chr3R 12045186 intergenic not near genes chr3R 12045224 intergenic not near genes chr3R 12045263 intergenic not near genes chr3R_7_12045001 chr3R_12045001 RAL-491 1087 chr3R 12080865 12080897 chr3R 12080941 12080975 5 77 3.0 1.5 2.2 1.6 110 chr3R 12080865 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080975 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-491 1088 chr3R 12214345 12214373 chr3R 12214428 12214451 7 82 5.0 2.0 3.5 1.6 106 chr3R 12214345 3` UTR CG4848 - chr3R 12214398 3` UTR CG4848 - chr3R 12214451 3` UTR CG4848 - chr3R_7_12210001 chr3R_12210001 RAL-491 1089 chr3R 12247147 12247174 chr3R 12247227 12247259 9 83 2.0 1.5 1.8 3.2 112 chr3R 12247147 intergenic not near genes chr3R 12247203 intergenic not near genes chr3R 12247259 intergenic not near genes chr3R_9_12245001 chr3R_12245001 RAL-491 1090 chr3R 12299807 12299839 chr3R 12299900 12299927 8 91 2.0 4.0 3.0 2.0 120 chr3R 12299807 intron svp + chr3R 12299867 intron svp + chr3R 12299927 intron svp + chr3R_8_12295001 chr3R_12295001 RAL-491 1091 chr3R 12314223 12314259 chr3R 12314337 12314373 8 114 1.0 5.0 3.0 2.0 150 chr3R 12314223 intergenic not near genes chr3R 12314298 intergenic not near genes chr3R 12314373 intergenic not near genes chr3R_8_12310001 chr3R_12310001 RAL-491 1092 chr3R 12344137 12344157 chr3R 12344209 12344234 5 69 0.5 4.0 2.2 1.6 97 chr3R 12344137 intergenic not near genes chr3R 12344186 intergenic not near genes chr3R 12344234 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-491 1093 chr3R 12436462 12436474 chr3R 12436549 12436551 4 84 7.0 3.0 5.0 0.7 89 chr3R 12436462 exon Desat2 + chr3R 12436506 exon Desat2 + chr3R 12436551 exon Desat2 + chr3R_4_12435001 chr3R_12435001 RAL-491 1094 chr3R 12520690 12520723 chr3R 12520777 12520786 10 80 2.5 4.5 3.5 2.2 96 chr3R 12520690 intron Octbeta3R - chr3R 12520738 intron Octbeta3R - chr3R 12520786 intron Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-491 1095 chr3R 12543614 12543623 chr3R 12543704 12543713 4 90 4.0 4.0 4.0 0.8 99 chr3R 12543614 intron Octbeta3R - chr3R 12543664 intron Octbeta3R - chr3R 12543713 intron Octbeta3R - chr3R_4_12540001 chr3R_12540001 RAL-491 1096 chr3R 12602398 12602411 chr3R 12602476 12602489 7 78 5.5 5.5 5.5 1.1 91 chr3R 12602398 intergenic not near genes chr3R 12602444 intergenic not near genes chr3R 12602489 intergenic not near genes chr3R_7_12600001 chr3R_12600001 RAL-491 1097 chr3R 12628622 12628635 chr3R 12628699 12628706 5 74 3.5 3.5 3.5 1.1 84 chr3R 12628622 intron Snx3 + chr3R 12628664 intron Snx3 + chr3R 12628706 intron Snx3 + chr3R_5_12625001 chr3R_12625001 RAL-491 1098 chr3R 12685442 12685449 chr3R 12685596 12685596 4 162 2.0 2.0 2.0 1.3 154 chr3R 12685442 intron kar - chr3R 12685519 intron kar - chr3R 12685596 intron kar - chr3R_4_12685001 chr3R_12685001 RAL-491 1099 chr3R 12733499 12733509 chr3R 12733555 12733586 4 72 1.0 1.0 1.0 2.0 87 chr3R 12733499 intergenic not near genes chr3R 12733542 intergenic not near genes chr3R 12733586 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-491 1100 chr3R 12920153 12920178 chr3R 12925356 12925378 copia 5 5199 4.0 1.0 2.5 1.4 5225 chr3R 12920153 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925378 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-491 1101 chr3R 13059962 13059975 chr3R 13060157 13060169 6 194 4.5 0.5 2.5 1.7 207 chr3R 13059962 intron sim + chr3R 13060066 intron sim + chr3R 13060169 intron sim + chr3R_6_13060001 chr3R_13060001 RAL-491 1102 chr3R 13067006 13067131 chr3R 13067093 13067207 8 76 0.0 0.0 0.0 8.0 201 chr3R 13067006 intron sim + chr3R 13067106 intron sim + chr3R 13067207 intron sim + chr3R_8_13065001 chr3R_13065001 RAL-491 1103 chr3R 13075360 13075382 chr3R 13075441 13075463 6 80 3.0 2.5 2.8 1.6 103 chr3R 13075360 intron sim + chr3R 13075412 intron sim + chr3R 13075463 intron sim + chr3R_6_13075001 chr3R_13075001 RAL-491 1104 chr3R 13104419 13104420 chr3R 21907534 21907534 4 8803116 17.0 19.0 18.0 0.2 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-491 1105 chr3R 13143041 13143066 chr3R 13148616 13148642 mdg3 5 5571 2.5 5.5 4.0 1.0 5601 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-491 1106 chr3R 13171903 13171935 chr3R 13172814 13172845 9 912 26.5 17.5 22.0 0.4 942 chr3R 13171903 intergenic not near genes chr3R 13172374 intergenic not near genes chr3R 13172845 intergenic not near genes chr3R_9_13170001 chr3R_13170001 RAL-491 1107 chr3R 13173446 13173476 chr3R 13173525 13173558 7 77 2.0 2.5 2.2 2.2 112 chr3R 13173446 intergenic not near genes chr3R 13173502 intergenic not near genes chr3R 13173558 intergenic not near genes chr3R_7_13170001 chr3R_13170001 RAL-491 1108 chr3R 13195963 13195982 chr3R 13196047 13196075 14 87 3.0 2.0 2.5 4.0 112 chr3R 13195963 intergenic not near genes chr3R 13196019 intergenic not near genes chr3R 13196075 intergenic not near genes chr3R_14_13195001 chr3R_13195001 RAL-491 1109 chr3R 13248656 13248679 chr3R 13248752 13248778 16 98 4.0 5.5 4.8 2.8 122 chr3R 13248656 intron Ace - chr3R 13248717 intron Ace - chr3R 13248778 intron Ace - chr3R_16_13245001 chr3R_13245001 RAL-491 1110 chr3R 13260726 13260750 chr3R 13260856 13260878 4 130 15.5 11.5 13.5 0.3 152 chr3R 13260726 intron CG11686 + chr3R 13260802 intron CG11686 + chr3R 13260878 intron CG11686 + chr3R_4_13260001 chr3R_13260001 RAL-491 1111 chr3R 13323960 13323979 chr3R 13324071 13324082 8 108 2.5 4.0 3.2 1.9 122 chr3R 13323960 intergenic not near genes chr3R 13324021 intergenic not near genes chr3R 13324082 intergenic not near genes chr3R_8_13320001 chr3R_13320001 RAL-491 1112 chr3R 13326948 13326961 chr3R 13327041 13327049 7 93 1.5 3.0 2.2 2.2 101 chr3R 13326948 intergenic not near genes chr3R 13326998 intergenic not near genes chr3R 13327049 intergenic not near genes chr3R_7_13325001 chr3R_13325001 RAL-491 1113 chr3R 13435388 13435412 chr3R 13435563 13435587 6 172 1.0 3.0 2.0 2.0 199 chr3R 13435388 intergenic yrt - chr3R 13435488 intergenic not near genes chr3R 13435587 intergenic not near genes chr3R_6_13435001 chr3R_13435001 RAL-491 1114 chr3R 13517231 13517252 chr3R 13520043 13520046 jockey 6 2807 3.5 0.5 2.0 2.0 2815 chr3R 13517231 intergenic not near genes chr3R 13518638 intergenic not near genes chr3R 13520046 intergenic not near genes chr3R_6_13515001 chr3R_13515001 RAL-491 1115 chr3R 13603054 13603076 chr3R 13603145 13603162 5 87 4.0 0.5 2.2 1.6 108 chr3R 13603054 intergenic not near genes chr3R 13603108 intergenic not near genes chr3R 13603162 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-491 1116 chr3R 13606706 13606732 chr3R 13606852 13606879 5 144 3.0 2.0 2.5 1.4 173 chr3R 13606706 intergenic CG9759 - chr3R 13606792 intergenic CG9759 - chr3R 13606879 intergenic CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-491 1117 chr3R 13863683 13863711 chr3R 13863770 13863797 11 83 4.0 2.5 3.2 2.6 114 chr3R 13863683 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863797 intergenic not near genes chr3R_11_13860001 chr3R_13860001 RAL-491 1118 chr3R 13958561 13958575 chr3R 13958657 13958671 4 96 2.0 1.0 1.5 1.6 110 chr3R 13958561 intergenic Ipp + chr3R 13958616 intergenic Ipp + chr3R 13958671 intergenic Ipp + chr3R_4_13955001 chr3R_13955001 RAL-491 1119 chr3R 13975372 13975409 chr3R 13975451 13975489 7 77 0.0 0.0 0.0 7.0 117 chr3R 13975372 intron rdx - chr3R 13975430 intron rdx - chr3R 13975489 intron rdx - chr3R_7_13975001 chr3R_13975001 RAL-491 1120 chr3R 14014276 14014305 chr3R 14014408 14014432 4 129 3.0 0.0 1.5 1.6 156 chr3R 14014276 intron rdx - chr3R 14014354 intron rdx - chr3R 14014432 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-491 1121 chr3R 14058128 14058154 chr3R 14058248 14058274 6 114 2.0 2.5 2.2 1.9 146 chr3R 14058128 intron foxo + chr3R 14058201 intron foxo + chr3R 14058274 intron foxo + chr3R_6_14055001 chr3R_14055001 RAL-491 1122 chr3R 14117443 14117471 chr3R 14117518 14117546 7 74 3.5 3.0 3.2 1.7 103 chr3R 14117443 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117546 intron Kif19A - chr3R_7_14115001 chr3R_14115001 RAL-491 1123 chr3R 14180826 14180841 chr3R 14185576 14185599 F-element 5 4758 1.0 1.5 1.2 2.3 4773 chr3R 14180826 intron Dop1R1 - chr3R 14183212 intron Dop1R1 - chr3R 14185599 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-491 1124 chr3R 14364069 14364091 chr3R 14364139 14364167 6 72 1.5 1.0 1.2 2.7 98 chr3R 14364069 intron NK7.1 - chr3R 14364118 intron NK7.1 - chr3R 14364167 intron NK7.1 - chr3R_6_14360001 chr3R_14360001 RAL-491 1125 chr3R 14440728 14440748 chr3R 14440804 14440824 4 76 2.0 1.0 1.5 1.6 96 chr3R 14440728 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440824 intron cv-c - chr3R_4_14440001 chr3R_14440001 RAL-491 1126 chr3R 14458902 14459069 chr3R 14458971 14459209 5 109 3.5 0.5 2.0 1.7 307 chr3R 14458902 intron cv-c - chr3R 14459056 intron cv-c - chr3R 14459209 intron cv-c - chr3R_5_14455001 chr3R_14455001 RAL-491 1127 chr3R 14497406 14497438 chr3R 14497486 14497518 13 79 3.0 2.5 2.8 3.4 112 chr3R 14497406 intron CR44177 + chr3R 14497462 intron CR44177 + chr3R 14497518 intron CR44177 + chr3R_13_14495001 chr3R_14495001 RAL-491 1128 chr3R 14526346 14526363 chr3R 14526519 14526528 5 175 1.5 3.5 2.5 1.4 182 chr3R 14526346 intron Pde6 - chr3R 14526437 intron Pde6 - chr3R 14526528 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-491 1129 chr3R 14549036 14549058 chr3R 14549122 14549145 7 84 2.0 1.5 1.8 2.5 109 chr3R 14549036 intron Pde6 - chr3R 14549090 intron Pde6 - chr3R 14549145 intron Pde6 - chr3R_7_14545001 chr3R_14545001 RAL-491 1130 chr3R 14579352 14579382 chr3R 14579441 14579471 4 83 1.5 1.5 1.5 1.6 119 chr3R 14579352 intron stumps + chr3R 14579412 intron stumps + chr3R 14579471 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-491 1131 chr3R 14662316 14662340 chr3R 14662396 14662421 6 78 3.5 5.5 4.5 1.1 105 chr3R 14662316 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-491 1132 chr3R 14785405 14785436 chr3R 14785492 14785508 17 85 2.0 3.0 2.5 4.9 103 chr3R 14785405 intron jvl + chr3R 14785456 intron jvl + chr3R 14785508 intron jvl + chr3R_17_14785001 chr3R_14785001 RAL-491 1133 chr3R 14842262 14842295 chr3R 14842346 14842379 8 83 0.5 3.0 1.8 2.9 117 chr3R 14842262 intron btsz - chr3R 14842320 intron btsz - chr3R 14842379 intron btsz - chr3R_8_14840001 chr3R_14840001 RAL-491 1134 chr3R 14898475 14898504 chr3R 14898595 14898618 7 117 2.5 2.0 2.2 2.2 143 chr3R 14898475 intergenic Nup93-2 -,CG3817 + chr3R 14898546 intergenic Nup93-2 -,CG3817 + chr3R 14898618 intergenic CG3817 +,Nup93-2 - chr3R_7_14895001 chr3R_14895001 RAL-491 1135 chr3R 14954808 14954837 chr3R 14955020 14955036 6 209 0.5 1.0 0.8 3.3 228 chr3R 14954808 intergenic not near genes chr3R 14954922 intergenic not near genes chr3R 14955036 intergenic not near genes chr3R_6_14950001 chr3R_14950001 RAL-491 1136 chr3R 14974263 14974294 chr3R 14974337 14974354 5 72 2.5 0.5 1.5 2.0 91 chr3R 14974263 intergenic not near genes chr3R 14974308 intergenic not near genes chr3R 14974354 intergenic not near genes chr3R_5_14970001 chr3R_14970001 RAL-491 1137 chr3R 15059469 15059481 chr3R 15059556 15059568 6 87 0.0 6.0 3.0 1.5 99 chr3R 15059469 intron dpr9 - chr3R 15059518 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_6_15055001 chr3R_15055001 RAL-491 1138 chr3R 15088074 15088103 chr3R 15088170 15088201 4 97 4.5 0.0 2.2 1.2 127 chr3R 15088074 intron CG6966 - chr3R 15088138 intron CG6966 - chr3R 15088201 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-491 1139 chr3R 15102503 15102531 chr3R 15109758 15109783 412 5 7254 1.0 2.0 1.5 2.0 7280 chr3R 15102503 intron CG42788 - chr3R 15106143 intron CG42788 - chr3R 15109783 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-491 1140 chr3R 15114913 15114937 chr3R 15114990 15115013 4 77 5.5 2.5 4.0 0.8 100 chr3R 15114913 intron CG42788 - chr3R 15114963 intron CG42788 - chr3R 15115013 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-491 1141 chr3R 15119555 15119560 chr3R 15119619 15119620 4 66 5.5 3.5 4.5 0.7 65 chr3R 15119555 intron CG42788 - chr3R 15119588 intron CG42788 - chr3R 15119620 intron CG42788 - chr3R_4_15115001 chr3R_15115001 RAL-491 1142 chr3R 15132063 15132066 chr3R 15135118 15135126 Juan 8 3058 20.5 17.0 18.8 0.4 3063 chr3R 15132063 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135126 intergenic CG6912 - chr3R_8_15130001 chr3R_15130001 RAL-491 1143 chr3R 15132068 15132087 chr3R 15135114 15135145 Juan 17 3056 12.0 15.0 13.5 1.2 3077 chr3R 15132068 intergenic CG42788 - chr3R 15133606 intergenic not near genes chr3R 15135145 3` UTR CG6912 - chr3R_17_15130001 chr3R_15130001 RAL-491 1144 chr3R 15162564 15162576 chr3R 15167315 15167328 F-element 5 4759 2.0 2.0 2.0 1.7 4764 chr3R 15162564 intron Gyc88E + chr3R 15164946 intron Gyc88E + chr3R 15167328 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-491 1145 chr3R 15416256 15416282 chr3R 15416327 15416359 7 77 2.5 2.5 2.5 2.0 103 chr3R 15416256 3` UTR Atx2 + chr3R 15416308 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-491 1146 chr3R 15517599 15517629 chr3R 15517680 15517712 6 79 4.0 3.5 3.8 1.2 113 chr3R 15517599 intergenic not near genes chr3R 15517656 intergenic not near genes chr3R 15517712 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-491 1147 chr3R 15521960 15521982 chr3R 15522050 15522073 4 89 2.5 1.5 2.0 1.3 113 chr3R 15521960 intergenic not near genes chr3R 15522016 intergenic not near genes chr3R 15522073 intergenic not near genes chr3R_4_15520001 chr3R_15520001 RAL-491 1148 chr3R 15594663 15594675 chr3R 15594738 15594758 7 78 0.0 4.0 2.0 2.3 95 chr3R 15594663 intergenic not near genes chr3R 15594710 intergenic not near genes chr3R 15594758 intergenic not near genes chr3R_7_15590001 chr3R_15590001 RAL-491 1149 chr3R 15601178 15601196 chr3R 15608693 15608718 412 4 7516 5.5 4.5 5.0 0.7 7540 chr3R 15601178 intergenic not near genes chr3R 15604948 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-491 1150 chr3R 15691183 15691325 chr3R 15691288 15691412 9 87 0.5 0.5 0.5 6.0 229 chr3R 15691183 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691412 intergenic not near genes chr3R_9_15690001 chr3R_15690001 RAL-491 1151 chr3R 15734195 15734203 chr3R 15734260 15734266 4 70 2.5 1.5 2.0 1.3 71 chr3R 15734195 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734266 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-491 1152 chr3R 15811499 15811535 chr3R 15811740 15811762 4 235 2.5 2.5 2.5 1.1 263 chr3R 15811499 intron alpha-Man-IIb + chr3R 15811630 intron alpha-Man-IIb + chr3R 15811762 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_4_15810001 chr3R_15810001 RAL-491 1153 chr3R 15954413 15954439 chr3R 15954481 15954514 12 70 3.0 5.0 4.0 2.4 101 chr3R 15954413 intron Sap47 + chr3R 15954464 intron Sap47 + chr3R 15954514 intron Sap47 + chr3R_12_15950001 chr3R_15950001 RAL-491 1154 chr3R 16225098 16225106 chr3R 16225178 16225191 4 84 4.5 3.0 3.8 0.8 93 chr3R 16225098 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225191 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-491 1155 chr3R 16374293 16374313 chr3R 16374410 16374430 4 117 5.0 2.5 3.8 0.8 137 chr3R 16374293 intergenic ss - chr3R 16374362 intergenic ss - chr3R 16374430 intergenic ss - chr3R_4_16370001 chr3R_16370001 RAL-491 1156 chr3R 16472582 16472599 chr3R 16472658 16472671 4 75 3.5 4.5 4.0 0.8 89 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472671 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-491 1157 chr3R 16576300 16576315 chr3R 16576377 16576401 8 83 4.0 3.5 3.8 1.7 101 chr3R 16576300 intron Scp2 - chr3R 16576350 intron Scp2 - chr3R 16576401 intron Scp2 - chr3R_8_16575001 chr3R_16575001 RAL-491 1158 chr3R 16662059 16662096 chr3R 16662146 16662177 10 84 1.5 3.0 2.2 3.1 118 chr3R 16662059 intron Ubx - chr3R 16662118 intron Ubx - chr3R 16662177 intron Ubx - chr3R_10_16660001 chr3R_16660001 RAL-491 1159 chr3R 16756336 16756345 chr3R 16762526 16762529 diver 5 6189 3.0 3.0 3.0 1.2 6193 chr3R 16756336 intron bxd - chr3R 16759432 intron bxd - chr3R 16762529 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-491 1160 chr3R 16897722 16897748 chr3R 16897799 16897827 4 78 3.5 1.5 2.5 1.1 105 chr3R 16897722 intron,5` UTR iab-8 -,CR43617 + chr3R 16897774 intron,5` UTR iab-8 -,CR43617 + chr3R 16897827 intron,5` UTR iab-8 -,CR43617 + chr3R_4_16895001 chr3R_16895001 RAL-491 1161 chr3R 16934544 16934568 chr3R 16934630 16934662 5 81 4.0 0.5 2.2 1.6 118 chr3R 16934544 intron Abd-B - chr3R 16934603 intron Abd-B - chr3R 16934662 intron Abd-B - chr3R_5_16930001 chr3R_16930001 RAL-491 1162 chr3R 17053019 17053052 chr3R 17053113 17053144 10 90 2.0 2.5 2.2 3.1 125 chr3R 17053019 intergenic not near genes chr3R 17053082 intergenic not near genes chr3R 17053144 intergenic not near genes chr3R_10_17050001 chr3R_17050001 RAL-491 1163 chr3R 17184738 17184755 chr3R 17184814 17184828 6 76 2.0 4.5 3.2 1.4 90 chr3R 17184738 intron Mur89F - chr3R 17184783 intron Mur89F - chr3R 17184828 intron Mur89F - chr3R_6_17180001 chr3R_17180001 RAL-491 1164 chr3R 17294668 17294698 chr3R 17295096 17295125 BS 10 427 1.0 1.0 1.0 5.0 457 chr3R 17294668 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295125 intergenic not near genes chr3R_10_17290001 chr3R_17290001 RAL-491 1165 chr3R 17355493 17355518 chr3R 17355571 17355581 4 74 2.5 1.5 2.0 1.3 88 chr3R 17355493 intron beat-IIa - chr3R 17355537 intron beat-IIa - chr3R 17355581 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-491 1166 chr3R 17415964 17415996 chr3R 17416044 17416076 11 77 3.5 3.0 3.2 2.6 112 chr3R 17415964 exon CG5866 + chr3R 17416020 exon CG5866 + chr3R 17416076 exon CG5866 + chr3R_11_17415001 chr3R_17415001 RAL-491 1167 chr3R 17461200 17461226 chr3R 17461282 17461308 6 80 1.5 2.0 1.8 2.1 108 chr3R 17461200 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461308 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-491 1168 chr3R 17638319 17638326 chr3R 17638805 17638812 roo 5 486 0.0 0.0 0.0 5.0 493 chr3R 17638319 intron CG43175 + chr3R 17638566 intron CG43175 + chr3R 17638812 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-491 1169 chr3R 17817089 17817265 chr3R 17817210 17817369 12 110 1.5 4.0 2.8 3.2 280 chr3R 17817089 intron tinc + chr3R 17817229 intron tinc + chr3R 17817369 intron tinc + chr3R_12_17815001 chr3R_17815001 RAL-491 1170 chr3R 17823210 17823231 chr3R 17823294 17823315 4 80 1.0 3.5 2.2 1.2 105 chr3R 17823210 intron tinc + chr3R 17823262 intron tinc + chr3R 17823315 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-491 1171 chr3R 17845207 17845216 chr3R 17845267 17845277 5 66 2.0 4.0 3.0 1.2 70 chr3R 17845207 intron tinc + chr3R 17845242 intron tinc + chr3R 17845277 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-491 1172 chr3R 17925867 17925889 chr3R 17927333 17927355 hobo 12 1461 2.5 5.5 4.0 2.4 1488 chr3R 17925867 intron cpo + chr3R 17926611 intron cpo + chr3R 17927355 intron cpo + chr3R_12_17925001 chr3R_17925001 RAL-491 1173 chr3R 18032785 18032804 chr3R 18040458 18040477 opus 5 7673 0.0 3.0 1.5 2.0 7692 chr3R 18032785 intergenic not near genes chr3R 18036631 intergenic not near genes chr3R 18040477 intergenic not near genes chr3R_5_18035001 chr3R_18035001 RAL-491 1174 chr3R 18041763 18041775 chr3R 18041840 18041851 4 76 0.0 1.0 0.5 2.7 88 chr3R 18041763 intergenic not near genes chr3R 18041807 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-491 1175 chr3R 18061582 18061609 chr3R 18063149 18063176 F-element 4 1568 2.0 2.5 2.2 1.2 1594 chr3R 18061582 intergenic not near genes chr3R 18062379 intergenic not near genes chr3R 18063176 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-491 1176 chr3R 18089071 18089108 chr3R 18089156 18089193 9 83 1.5 2.5 2.0 3.0 122 chr3R 18089071 intergenic not near genes chr3R 18089132 intergenic not near genes chr3R 18089193 intergenic not near genes chr3R_9_18085001 chr3R_18085001 RAL-491 1177 chr3R 18098276 18098285 chr3R 18098353 18098362 4 77 0.5 0.0 0.2 3.3 86 chr3R 18098276 intron sr + chr3R 18098319 intron sr + chr3R 18098362 intron sr + chr3R_4_18095001 chr3R_18095001 RAL-491 1178 chr3R 18379625 18379657 chr3R 18379931 18379963 9 305 3.0 2.5 2.8 2.4 338 chr3R 18379625 intron CG7675 - chr3R 18379794 intron CG7675 - chr3R 18379963 intron CG7675 - chr3R_9_18375001 chr3R_18375001 RAL-491 1179 chr3R 18495605 18495642 chr3R 18496038 18496075 5 432 2.5 4.5 3.5 1.1 470 chr3R 18495605 intron fru - chr3R 18495840 intron fru - chr3R 18496075 intron fru - chr3R_5_18495001 chr3R_18495001 RAL-491 1180 chr3R 18501594 18501626 chr3R 18501674 18501707 13 78 2.5 3.5 3.0 3.2 113 chr3R 18501594 intron fru - chr3R 18501650 intron fru - chr3R 18501707 intron fru - chr3R_13_18500001 chr3R_18500001 RAL-491 1181 chr3R 18579504 18579586 chr3R 18579581 18579663 4 77 0.0 0.0 0.0 4.0 159 chr3R 18579504 intron,intron CG7694 +,fray + chr3R 18579584 intron,intron CG7694 +,fray + chr3R 18579663 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-491 1182 chr3R 18695762 18695785 chr3R 18695845 18695855 5 80 2.5 0.0 1.2 2.3 93 chr3R 18695762 3` UTR CG34282 + chr3R 18695808 intergenic CG34282 + chr3R 18695855 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-491 1183 chr3R 18766777 18766809 chr3R 18766855 18766887 14 78 2.5 3.5 3.0 3.5 110 chr3R 18766777 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766887 intron CG7720 - chr3R_14_18765001 chr3R_18765001 RAL-491 1184 chr3R 18770293 18770317 chr3R 18770375 18770377 5 77 1.5 1.0 1.2 2.3 84 chr3R 18770293 intron CG7720 - chr3R 18770335 intron CG7720 - chr3R 18770377 intron CG7720 - chr3R_5_18770001 chr3R_18770001 RAL-491 1185 chr3R 18785869 18785893 chr3R 18785941 18785954 5 72 5.5 1.5 3.5 1.1 85 chr3R 18785869 intron CG7720 - chr3R 18785912 intron CG7720 - chr3R 18785954 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-491 1186 chr3R 18812076 18812106 chr3R 18812154 18812184 11 76 1.0 1.0 1.0 5.5 108 chr3R 18812076 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-491 1187 chr3R 19117064 19117071 chr3R 19117208 19117214 6 142 10.0 0.5 5.2 1.0 150 chr3R 19117064 intron CG6040 + chr3R 19117139 intron CG6040 + chr3R 19117214 intron CG6040 + chr3R_6_19115001 chr3R_19115001 RAL-491 1188 chr3R 19201276 19201306 chr3R 19201363 19201392 6 86 2.0 3.0 2.5 1.7 116 chr3R 19201276 intergenic CG31475 + chr3R 19201334 intergenic CG31475 + chr3R 19201392 intergenic CG31475 + chr3R_6_19200001 chr3R_19200001 RAL-491 1189 chr3R 19207393 19207406 chr3R 19207481 19207493 4 87 3.0 5.5 4.2 0.8 100 chr3R 19207393 intergenic not near genes chr3R 19207443 intergenic not near genes chr3R 19207493 intergenic not near genes chr3R_4_19205001 chr3R_19205001 RAL-491 1190 chr3R 19369512 19369518 chr3R 19369599 19369605 4 86 1.5 6.5 4.0 0.8 93 chr3R 19369512 intron Ino80 - chr3R 19369558 intron Ino80 - chr3R 19369605 intron Ino80 - chr3R_4_19365001 chr3R_19365001 RAL-491 1191 chr3R 19472398 19472430 chr3R 19472483 19472512 14 84 1.0 1.5 1.2 6.4 114 chr3R 19472398 intron Dys + chr3R 19472455 intron Dys + chr3R 19472512 intron Dys + chr3R_14_19470001 chr3R_19470001 RAL-491 1192 chr3R 19490440 19490466 chr3R 19490528 19490555 11 87 5.5 5.0 5.2 1.8 115 chr3R 19490440 intron,exon Dys +,CG15025 - chr3R 19490498 intron,intron Dys +,CG15025 - chr3R 19490555 intron,intron Dys +,CG15025 - chr3R_11_19490001 chr3R_19490001 RAL-491 1193 chr3R 19611994 19612015 chr3R 19616027 19616048 8 4033 12.5 11.0 11.8 0.6 4054 chr3R 19611994 exon CG17752 + chr3R 19614021 exon CG16727 + chr3R 19616048 3` UTR CG6231 - chr3R_8_19610001 chr3R_19610001 RAL-491 1194 chr3R 19849905 19849930 chr3R 19849978 19850000 7 76 4.0 6.5 5.2 1.1 95 chr3R 19849905 intron CG4662 + chr3R 19849952 intron CG4662 + chr3R 19850000 intron CG4662 + chr3R_7_19845001 chr3R_19845001 RAL-491 1195 chr3R 19859963 19859995 chr3R 19860044 19860060 7 72 1.5 2.0 1.8 2.5 97 chr3R 19859963 intron Ire1 - chr3R 19860012 intron Ire1 - chr3R 19860060 intron Ire1 - chr3R_7_19860001 chr3R_19860001 RAL-491 1196 chr3R 19914013 19914044 chr3R 19914106 19914135 8 91 1.5 3.0 2.2 2.5 122 chr3R 19914013 3` UTR RhoGAP92B + chr3R 19914074 3` UTR RhoGAP92B + chr3R 19914135 3` UTR RhoGAP92B + chr3R_8_19910001 chr3R_19910001 RAL-491 1197 chr3R 20008820 20008856 chr3R 20008901 20008936 11 77 2.0 3.0 2.5 3.1 116 chr3R 20008820 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008936 intergenic MED25 +,Hs6st - chr3R_11_20005001 chr3R_20005001 RAL-491 1198 chr3R 20077035 20077070 chr3R 20077121 20077156 8 86 1.0 3.0 2.0 2.7 121 chr3R 20077035 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077156 intergenic not near genes chr3R_8_20075001 chr3R_20075001 RAL-491 1199 chr3R 20109543 20109563 chr3R 20114749 20114769 copia 6 5202 0.0 3.0 1.5 2.4 5226 chr3R 20109543 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114769 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-491 1200 chr3R 20156696 20156723 chr3R 20165866 20165892 roo 6 9169 3.0 3.5 3.2 1.4 9196 chr3R 20156696 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-491 1201 chr3R 20196332 20196365 chr3R 20196421 20196432 10 80 2.0 2.5 2.2 3.1 100 chr3R 20196332 intergenic not near genes chr3R 20196382 intergenic not near genes chr3R 20196432 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-491 1202 chr3R 20256850 20256870 chr3R 20256924 20256948 4 77 0.0 3.0 1.5 1.6 98 chr3R 20256850 intron cic + chr3R 20256899 intron cic + chr3R 20256948 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-491 1203 chr3R 20282276 20282309 chr3R 20282352 20282385 4 76 0.5 0.5 0.5 2.7 109 chr3R 20282276 intron cic + chr3R 20282330 intron cic + chr3R 20282385 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-491 1204 chr3R 20331000 20331030 chr3R 20331486 20331516 roo 8 483 1.5 1.0 1.2 3.6 516 chr3R 20331000 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331516 intergenic not near genes chr3R_8_20330001 chr3R_20330001 RAL-491 1205 chr3R 20506596 20506616 chr3R 20507390 20507405 BS 7 796 2.5 3.5 3.0 1.8 809 chr3R 20506596 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507405 3` UTR CG4288 - chr3R_7_20505001 chr3R_20505001 RAL-491 1206 chr3R 20513002 20513024 chr3R 20515705 20515720 opus 6 2702 1.5 1.0 1.2 2.7 2718 chr3R 20513002 intergenic not near genes chr3R 20514361 intergenic not near genes chr3R 20515720 intergenic not near genes chr3R_6_20510001 chr3R_20510001 RAL-491 1207 chr3R 20516540 20516570 chr3R 20516896 20516914 5 354 1.5 2.5 2.0 1.7 374 chr3R 20516540 intergenic not near genes chr3R 20516727 intergenic not near genes chr3R 20516914 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-491 1208 chr3R 20594482 20594510 chr3R 20594571 20594600 5 89 3.0 0.0 1.5 2.0 118 chr3R 20594482 intron bon + chr3R 20594541 intron bon + chr3R 20594600 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-491 1209 chr3R 20703495 20703513 chr3R 20703889 20703890 6 389 0.0 4.0 2.0 2.0 395 chr3R 20703495 intron Oamb - chr3R 20703692 intron Oamb - chr3R 20703890 intron Oamb - chr3R_6_20700001 chr3R_20700001 RAL-491 1210 chr3R 20733760 20733796 chr3R 20733852 20733888 6 89 5.0 2.0 3.5 1.3 128 chr3R 20733760 intergenic not near genes chr3R 20733824 intergenic not near genes chr3R 20733888 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-491 1211 chr3R 20787437 20787457 chr3R 20787528 20787548 4 91 3.5 2.0 2.8 1.1 111 chr3R 20787437 intron Syp + chr3R 20787492 intron Syp + chr3R 20787548 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-491 1212 chr3R 20854485 20854514 chr3R 20859274 20859298 Doc 6 4788 9.0 2.0 5.5 0.9 4813 chr3R 20854485 intron Ir93a - chr3R 20856892 intron Ir93a - chr3R 20859298 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-491 1213 chr3R 20870251 20870284 chr3R 20870334 20870359 10 82 1.0 3.0 2.0 3.3 108 chr3R 20870251 intergenic not near genes chr3R 20870305 intergenic not near genes chr3R 20870359 intergenic not near genes chr3R_10_20870001 chr3R_20870001 RAL-491 1214 chr3R 21014012 21014044 chr3R 21014090 21014122 13 76 0.5 3.5 2.0 4.3 110 chr3R 21014012 3` UTR Calx + chr3R 21014067 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_13_21010001 chr3R_21010001 RAL-491 1215 chr3R 21074808 21074830 chr3R 21075029 21075050 6 220 2.5 2.0 2.2 1.9 242 chr3R 21074808 intron dmrt93B + chr3R 21074929 intron dmrt93B + chr3R 21075050 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-491 1216 chr3R 21141673 21141706 chr3R 21150154 21150168 Tirant 6 8470 2.0 2.0 2.0 2.0 8495 chr3R 21141673 intron SNF4Agamma + chr3R 21145920 intron SNF4Agamma + chr3R 21150168 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-491 1217 chr3R 21183251 21183261 chr3R 21183329 21183339 5 76 2.5 3.0 2.8 1.3 88 chr3R 21183251 intron SNF4Agamma + chr3R 21183295 intron SNF4Agamma + chr3R 21183339 intron SNF4Agamma + chr3R_5_21180001 chr3R_21180001 RAL-491 1218 chr3R 21293208 21293227 chr3R 21293315 21293339 6 108 3.0 3.5 3.2 1.4 131 chr3R 21293208 intron SIFaR - chr3R 21293274 intron SIFaR - chr3R 21293339 intron SIFaR - chr3R_6_21290001 chr3R_21290001 RAL-491 1219 chr3R 21472014 21472034 chr3R 21472095 21472115 4 81 3.5 3.5 3.5 0.9 101 chr3R 21472014 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-491 1220 chr3R 21481387 21481394 chr3R 21481478 21481485 5 91 4.5 0.0 2.2 1.6 98 chr3R 21481387 intergenic not near genes chr3R 21481436 intergenic not near genes chr3R 21481485 intergenic not near genes chr3R_5_21480001 chr3R_21480001 RAL-491 1221 chr3R 21494682 21494700 chr3R 21494762 21494779 5 78 4.0 4.0 4.0 1.0 97 chr3R 21494682 intergenic not near genes chr3R 21494730 intergenic not near genes chr3R 21494779 intergenic not near genes chr3R_5_21490001 chr3R_21490001 RAL-491 1222 chr3R 21520001 21520139 chr3R 21520102 21520227 9 94 1.0 1.0 1.0 4.5 226 chr3R 21520001 intergenic not near genes chr3R 21520114 intergenic not near genes chr3R 21520227 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-491 1223 chr3R 21725673 21725683 chr3R 21725809 21725816 5 135 0.5 2.0 1.2 2.3 143 chr3R 21725673 intergenic not near genes chr3R 21725744 intergenic not near genes chr3R 21725816 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-491 1224 chr3R 21761131 21761154 chr3R 21768511 21768543 mdg1 9 7389 2.0 3.0 2.5 2.6 7412 chr3R 21761131 exon CG42335 + chr3R 21764837 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-491 1225 chr3R 17389054 17389054 chr3R 21907534 21907534 5 4518480 8.0 19.0 13.5 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-491 1226 chr3R 21337429 21337429 chr3R 21907534 21907534 4 570105 6.5 19.0 12.8 0.3 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-491 1227 chr3R 21907534 21907534 chr3R 28831801 28831802 6 6924268 21.5 17.0 19.2 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-491 1228 chr3R 8339242 8339247 chr3R 21907535 21907535 12 13568289 17.0 19.5 18.2 0.6 13568293 chr3R 8339242 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-491 1229 chr3R 9620954 9620956 chr3R 21907535 21907535 4 12286580 14.0 19.5 16.8 0.2 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-491 1230 chr3R 17389054 17389054 chr3R 21907535 21907535 4 4518481 8.0 19.5 13.8 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-491 1231 chr3R 21907535 21907535 chr3R 28831801 28831802 21 6924266 21.5 17.0 19.2 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-491 1232 chr3R 21907536 21907536 chr3R 28831801 28831802 22 6924266 21.5 17.0 19.2 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-491 1233 chr3R 21924013 21924045 chr3R 21924102 21924128 6 89 2.5 1.5 2.0 2.0 115 chr3R 21924013 intergenic not near genes chr3R 21924070 intergenic not near genes chr3R 21924128 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-491 1234 chr3R 21983143 21983157 chr3R 21983222 21983238 10 79 5.0 3.5 4.2 1.9 95 chr3R 21983143 intron Eip93F + chr3R 21983190 intron Eip93F + chr3R 21983238 intron Eip93F + chr3R_10_21980001 chr3R_21980001 RAL-491 1235 chr3R 22190829 22190850 chr3R 22190907 22190927 8 76 4.5 0.0 2.2 2.5 98 chr3R 22190829 intron SKIP + chr3R 22190878 intron SKIP + chr3R 22190927 intron SKIP + chr3R_8_22190001 chr3R_22190001 RAL-491 1236 chr3R 22428576 22428609 chr3R 22428652 22428685 20 73 3.0 4.0 3.5 4.4 109 chr3R 22428576 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_20_22425001 chr3R_22425001 RAL-491 1237 chr3R 22437795 22437822 chr3R 22437885 22437907 9 87 2.0 2.0 2.0 3.0 112 chr3R 22437795 intergenic not near genes chr3R 22437851 intergenic not near genes chr3R 22437907 intergenic not near genes chr3R_9_22435001 chr3R_22435001 RAL-491 1238 chr3R 22450557 22450579 chr3R 22453179 22453218 NOF 7 2631 1.5 4.0 2.8 1.8 2661 chr3R 22450557 intron CG34376 + chr3R 22451888 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-491 1239 chr3R 22503871 22503904 chr3R 22503951 22503970 13 76 4.5 2.0 3.2 3.1 99 chr3R 22503871 intron Octbeta1R + chr3R 22503920 intron Octbeta1R + chr3R 22503970 intron Octbeta1R + chr3R_13_22500001 chr3R_22500001 RAL-491 1240 chr3R 22538454 22538474 chr3R 22538532 22538559 8 83 2.0 3.0 2.5 2.3 105 chr3R 22538454 intron CG5326 - chr3R 22538506 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_8_22535001 chr3R_22535001 RAL-491 1241 chr3R 22580651 22580674 chr3R 22580727 22580730 4 74 2.5 1.5 2.0 1.3 79 chr3R 22580651 intergenic CSN6 +,CG33110 + chr3R 22580690 intergenic CSN6 +,CG33110 + chr3R 22580730 intergenic CSN6 +,CG33110 + chr3R_4_22580001 chr3R_22580001 RAL-491 1242 chr3R 22591883 22591891 chr3R 22591976 22591984 5 93 4.5 7.0 5.8 0.7 101 chr3R 22591883 intron Efa6 + chr3R 22591934 intron Efa6 + chr3R 22591984 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-491 1243 chr3R 22722098 22722108 chr3R 22722229 22722246 7 136 2.5 3.5 3.0 1.8 148 chr3R 22722098 exon Irp-1A - chr3R 22722172 exon Irp-1A - chr3R 22722246 exon Irp-1A - chr3R_7_22720001 chr3R_22720001 RAL-491 1244 chr3R 22722110 22722123 chr3R 22722227 22722250 6 124 2.0 3.5 2.8 1.6 140 chr3R 22722110 exon Irp-1A - chr3R 22722180 exon Irp-1A - chr3R 22722250 exon Irp-1A - chr3R_6_22720001 chr3R_22720001 RAL-491 1245 chr3R 22797767 22797932 chr3R 22797850 22798028 17 91 0.5 0.0 0.2 14.2 261 chr3R 22797767 intergenic not near genes chr3R 22797898 intergenic not near genes chr3R 22798028 intergenic not near genes chr3R_17_22795001 chr3R_22795001 RAL-491 1246 chr3R 22847530 22847542 chr3R 22848023 22848036 6 492 3.0 3.0 3.0 1.5 506 chr3R 22847530 intergenic not near genes chr3R 22847783 intergenic not near genes chr3R 22848036 intergenic not near genes chr3R_6_22845001 chr3R_22845001 RAL-491 1247 chr3R 22871431 22871453 chr3R 22871564 22871585 4 131 3.0 1.5 2.2 1.2 154 chr3R 22871431 intergenic not near genes chr3R 22871508 intergenic not near genes chr3R 22871585 intergenic not near genes chr3R_4_22870001 chr3R_22870001 RAL-491 1248 chr3R 23064183 23064196 chr3R 23064286 23064291 6 103 4.0 5.5 4.8 1.0 108 chr3R 23064183 exon CG17111 - chr3R 23064237 intron CG17111 - chr3R 23064291 exon CG17111 - chr3R_6_23060001 chr3R_23060001 RAL-491 1249 chr3R 23064877 23064896 chr3R 23064968 23064975 6 87 0.0 3.0 1.5 2.4 98 chr3R 23064877 intron CG17111 - chr3R 23064926 intron CG17111 - chr3R 23064975 intron CG17111 - chr3R_6_23060001 chr3R_23060001 RAL-491 1250 chr3R 23073653 23073689 chr3R 23073741 23073778 8 81 2.5 2.0 2.2 2.5 125 chr3R 23073653 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-491 1251 chr3R 23101388 23101407 chr3R 23101473 23101479 8 81 3.0 2.0 2.5 2.3 91 chr3R 23101388 intron CG13830 - chr3R 23101434 intron CG13830 - chr3R 23101479 intron CG13830 - chr3R_8_23100001 chr3R_23100001 RAL-491 1252 chr3R 23421985 23422009 chr3R 23422062 23422091 5 77 3.5 2.0 2.8 1.3 106 chr3R 23421985 intron CG4374 - chr3R 23422038 intron CG4374 - chr3R 23422091 intron CG4374 - chr3R_5_23420001 chr3R_23420001 RAL-491 1253 chr3R 23431077 23431098 chr3R 23431147 23431163 5 69 2.5 2.0 2.2 1.6 86 chr3R 23431077 intron CG4374 - chr3R 23431120 intron CG4374 - chr3R 23431163 intron CG4374 - chr3R_5_23430001 chr3R_23430001 RAL-491 1254 chr3R 23564450 23564474 chr3R 23564593 23564600 8 140 2.5 3.5 3.0 2.0 150 chr3R 23564450 intron beat-IV + chr3R 23564525 intron beat-IV + chr3R 23564600 intron beat-IV + chr3R_8_23560001 chr3R_23560001 RAL-491 1255 chr3R 23589893 23589911 chr3R 23590297 23590303 7 404 2.5 4.0 3.2 1.7 410 chr3R 23589893 intergenic CG10182 -,CG33337 - chr3R 23590098 intergenic CG33337 -,CG10182 - chr3R 23590303 exon CG33337 - chr3R_7_23590001 chr3R_23590001 RAL-491 1256 chr3R 23639940 23639960 chr3R 23640244 23640264 5 305 1.0 2.5 1.8 1.8 324 chr3R 23639940 intron CG31145 - chr3R 23640102 intron CG31145 - chr3R 23640264 intron CG31145 - chr3R_5_23640001 chr3R_23640001 RAL-491 1257 chr3R 23650259 23650278 chr3R 23650379 23650395 6 122 3.5 0.0 1.8 2.1 136 chr3R 23650259 intron CG31145 - chr3R 23650327 intron CG31145 - chr3R 23650395 intron CG31145 - chr3R_6_23650001 chr3R_23650001 RAL-491 1258 chr3R 23662849 23662865 chr3R 23662969 23662972 13 120 3.5 1.0 2.2 4.1 123 chr3R 23662849 intron CG31145 - chr3R 23662910 intron CG31145 - chr3R 23662972 intron CG31145 - chr3R_13_23660001 chr3R_23660001 RAL-491 1259 chr3R 23733128 23733156 chr3R 23733242 23733271 7 114 2.0 1.0 1.5 2.8 143 chr3R 23733128 intron Rpn9 - chr3R 23733200 intron Rpn9 - chr3R 23733271 5` UTR Rpn9 - chr3R_7_23730001 chr3R_23730001 RAL-491 1260 chr3R 23826269 23826274 chr3R 23827851 23827851 5 1584 3.5 21.5 12.5 0.4 1582 chr3R 23826269 intron CG34355 + chr3R 23827060 intron CG34355 + chr3R 23827851 intron CG34355 + chr3R_5_23825001 chr3R_23825001 RAL-491 1261 chr3R 23835408 23835436 chr3R 23844558 23844586 roo 6 9148 2.5 4.5 3.5 1.3 9178 chr3R 23835408 intron CG34355 + chr3R 23839997 intron CG34355 + chr3R 23844586 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-491 1262 chr3R 23865030 23865058 chr3R 23865119 23865147 4 87 2.5 2.5 2.5 1.1 117 chr3R 23865030 intron Pli - chr3R 23865088 intron Pli - chr3R 23865147 intron Pli - chr3R_4_23865001 chr3R_23865001 RAL-491 1263 chr3R 23877455 23877486 chr3R 23877701 23877731 5 243 2.5 1.5 2.0 1.7 276 chr3R 23877455 intron Pli - chr3R 23877593 intron Pli - chr3R 23877731 intron Pli - chr3R_5_23875001 chr3R_23875001 RAL-491 1264 chr3R 23944913 23944936 chr3R 23944998 23945021 9 83 4.0 4.0 4.0 1.8 108 chr3R 23944913 intron CG12268 - chr3R 23944967 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-491 1265 chr3R 24072083 24072123 chr3R 24072521 24072538 jockey 5 428 3.5 0.0 1.8 1.8 455 chr3R 24072083 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-491 1266 chr3R 24074566 24074588 chr3R 24074642 24074664 9 74 6.5 4.0 5.2 1.5 98 chr3R 24074566 intron 4EHP - chr3R 24074615 intron 4EHP - chr3R 24074664 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-491 1267 chr3R 24076915 24076946 chr3R 24078378 24078403 hobo 6 1464 5.0 5.0 5.0 1.0 1488 chr3R 24076915 intron 4EHP - chr3R 24077659 intron 4EHP - chr3R 24078403 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-491 1268 chr3R 24100461 24100480 chr3R 24100556 24100575 4 93 1.0 2.0 1.5 1.6 114 chr3R 24100461 intron 4EHP - chr3R 24100518 intron 4EHP - chr3R 24100575 intron 4EHP - chr3R_4_24100001 chr3R_24100001 RAL-491 1269 chr3R 24199737 24199770 chr3R 24199817 24199848 8 76 0.5 3.5 2.0 2.7 111 chr3R 24199737 intron twin - chr3R 24199792 intron twin - chr3R 24199848 intron twin - chr3R_8_24195001 chr3R_24195001 RAL-491 1270 chr3R 24207228 24207245 chr3R 24212290 24212321 flea 7 5069 3.0 6.5 4.8 1.2 5093 chr3R 24207228 intron twin - chr3R 24209774 intron twin - chr3R 24212321 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-491 1271 chr3R 21907534 21907535 chr3R 24389465 24389465 4 2481930 21.5 10.5 16.0 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-491 1272 chr3R 24431602 24431627 chr3R 24431680 24431706 7 79 2.5 1.5 2.0 2.3 104 chr3R 24431602 intron nAChRalpha1 - chr3R 24431654 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-491 1273 chr3R 24447722 24447752 chr3R 24447809 24447839 5 87 0.0 0.0 0.0 5.0 117 chr3R 24447722 intron nAChRalpha1 - chr3R 24447780 intron nAChRalpha1 - chr3R 24447839 intron nAChRalpha1 - chr3R_5_24445001 chr3R_24445001 RAL-491 1274 chr3R 24493061 24493089 chr3R 24493147 24493166 7 83 3.0 4.5 3.8 1.5 105 chr3R 24493061 intergenic not near genes chr3R 24493114 intergenic not near genes chr3R 24493166 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-491 1275 chr3R 24493277 24493308 chr3R 24493506 24493535 BS 8 226 4.0 3.0 3.5 1.8 258 chr3R 24493277 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493535 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-491 1276 chr3R 24527826 24527830 chr3R 24527903 24527921 4 88 2.5 1.0 1.8 1.4 95 chr3R 24527826 intergenic CG6607 +,CG13618 + chr3R 24527874 intergenic CG6607 +,CG13618 + chr3R 24527921 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-491 1277 chr3R 24667607 24667624 chr3R 24667683 24667701 5 76 2.5 0.0 1.2 2.3 94 chr3R 24667607 intron slo + chr3R 24667654 intron slo + chr3R 24667701 intron slo + chr3R_5_24665001 chr3R_24665001 RAL-491 1278 chr3R 24670053 24670198 chr3R 24670163 24670272 7 93 0.0 0.0 0.0 7.0 219 chr3R 24670053 intron slo + chr3R 24670162 intron slo + chr3R 24670272 intron slo + chr3R_7_24670001 chr3R_24670001 RAL-491 1279 chr3R 24671224 24671254 chr3R 24671295 24671331 6 71 2.5 1.0 1.8 2.1 107 chr3R 24671224 intron slo + chr3R 24671278 intron slo + chr3R 24671331 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-491 1280 chr3R 24730118 24730122 chr3R 24732470 24732473 Doc 4 2356 3.0 1.0 2.0 1.3 2355 chr3R 24730118 intron tok + chr3R 24731296 intron tok + chr3R 24732473 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-491 1281 chr3R 24893469 24893485 chr3R 24893549 24893565 4 80 3.5 1.0 2.2 1.2 96 chr3R 24893469 intron CG31121 - chr3R 24893517 intron CG31121 - chr3R 24893565 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-491 1282 chr3R 24927141 24927153 chr3R 24931918 24931932 Doc 5 4783 4.0 2.5 3.2 1.2 4791 chr3R 24927141 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931932 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-491 1283 chr3R 24974912 24974936 chr3R 24974991 24975003 11 75 1.0 5.5 3.2 2.6 91 chr3R 24974912 intergenic not near genes chr3R 24974958 intergenic not near genes chr3R 24975003 intergenic not near genes chr3R_11_24970001 chr3R_24970001 RAL-491 1284 chr3R 25241803 25241822 chr3R 25241884 25241909 7 79 5.0 4.0 4.5 1.3 106 chr3R 25241803 intergenic to +,CG11854 + chr3R 25241856 intergenic CG11854 +,to + chr3R 25241909 intergenic CG11854 +,to + chr3R_7_25240001 chr3R_25240001 RAL-491 1285 chr3R 25296170 25296188 chr3R 25296249 25296250 5 75 1.0 4.0 2.5 1.4 80 chr3R 25296170 3` UTR CG31097 - chr3R 25296210 3` UTR CG31097 - chr3R 25296250 3` UTR CG31097 - chr3R_5_25295001 chr3R_25295001 RAL-491 1286 chr3R 25422071 25422096 chr3R 25422148 25422177 4 80 1.5 0.0 0.8 2.2 106 chr3R 25422071 intron Fur1 - chr3R 25422124 intron Fur1 - chr3R 25422177 intron Fur1 - chr3R_4_25420001 chr3R_25420001 RAL-491 1287 chr3R 25612909 25612921 chr3R 25612986 25612998 7 77 8.0 3.5 5.8 1.0 89 chr3R 25612909 intron Npl4 - chr3R 25612954 intron Npl4 - chr3R 25612998 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-491 1288 chr3R 25612925 25612940 chr3R 25612987 25613014 7 72 4.0 3.5 3.8 1.5 89 chr3R 25612925 intron Npl4 - chr3R 25612970 intron Npl4 - chr3R 25613014 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-491 1289 chr3R 25689126 25689160 chr3R 25689234 25689251 14 105 5.0 1.0 3.0 3.5 125 chr3R 25689126 intergenic not near genes chr3R 25689188 intergenic not near genes chr3R 25689251 intergenic not near genes chr3R_14_25685001 chr3R_25685001 RAL-491 1290 chr3R 25709612 25709646 chr3R 25709693 25709728 7 75 0.0 1.0 0.5 4.7 116 chr3R 25709612 intron LpR2 - chr3R 25709670 intron LpR2 - chr3R 25709728 intron LpR2 - chr3R_7_25705001 chr3R_25705001 RAL-491 1291 chr3R 25725828 25725853 chr3R 25734988 25735013 roo 7 9160 1.0 2.0 1.5 2.8 9185 chr3R 25725828 intron LpR2 - chr3R 25730420 intron LpR2 - chr3R 25735013 intron LpR2 - chr3R_7_25730001 chr3R_25730001 RAL-491 1292 chr3R 25738633 25738665 chr3R 25738718 25738751 7 85 3.0 1.0 2.0 2.3 118 chr3R 25738633 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738751 intron LpR2 - chr3R_7_25735001 chr3R_25735001 RAL-491 1293 chr3R 25832711 25832724 chr3R 25841875 25841906 roo 5 9178 1.5 2.5 2.0 1.7 9195 chr3R 25832711 exon alpha4GT2 + chr3R 25837308 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-491 1294 chr3R 25843646 25843669 chr3R 25843775 25843798 7 129 1.0 3.5 2.2 2.2 152 chr3R 25843646 intergenic CR45653 + chr3R 25843722 intergenic CR45653 + chr3R 25843798 intergenic CR45653 + chr3R_7_25840001 chr3R_25840001 RAL-491 1295 chr3R 25847691 25847721 chr3R 25847853 25847885 12 161 2.5 1.5 2.0 4.0 194 chr3R 25847691 intergenic CR45656 -,CR45657 + chr3R 25847788 intergenic CR45656 -,CR45657 + chr3R 25847885 intergenic CR45657 +,CR45656 - chr3R_12_25845001 chr3R_25845001 RAL-491 1296 chr3R 25869215 25869241 chr3R 25869409 25869434 8 192 3.5 3.5 3.5 1.8 219 chr3R 25869215 intron CG5890 + chr3R 25869324 intron CG5890 + chr3R 25869434 intron CG5890 + chr3R_8_25865001 chr3R_25865001 RAL-491 1297 chr3R 26122464 26122477 chr3R 26122540 26122552 9 76 6.0 2.5 4.2 1.7 88 chr3R 26122464 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122552 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-491 1298 chr3R 26126557 26126569 chr3R 26126643 26126655 7 85 2.5 3.0 2.8 1.8 98 chr3R 26126557 intron CG31324 + chr3R 26126606 intron CG31324 + chr3R 26126655 intron CG31324 + chr3R_7_26125001 chr3R_26125001 RAL-491 1299 chr3R 26235505 26235522 chr3R 26235571 26235577 5 61 2.0 1.5 1.8 1.8 72 chr3R 26235505 5` UTR CR42745 + chr3R 26235541 5` UTR CR42745 + chr3R 26235577 5` UTR CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-491 1300 chr3R 26292103 26292135 chr3R 26292183 26292215 9 80 2.0 2.5 2.2 2.8 112 chr3R 26292103 intergenic not near genes chr3R 26292159 intergenic not near genes chr3R 26292215 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-491 1301 chr3R 26376326 26376356 chr3R 26385486 26385516 roo 5 9157 3.0 1.0 2.0 1.7 9190 chr3R 26376326 intergenic not near genes chr3R 26380921 intergenic not near genes chr3R 26385516 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-491 1302 chr3R 26542061 26542079 chr3R 26542143 26542170 4 84 2.5 1.0 1.8 1.4 109 chr3R 26542061 intron scrib + chr3R 26542116 intron scrib + chr3R 26542170 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-491 1303 chr3R 26642746 26642761 chr3R 26643121 26643154 jockey 8 391 4.0 3.5 3.8 1.7 408 chr3R 26642746 intergenic not near genes chr3R 26642950 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-491 1304 chr3R 26710835 26710837 chr3R 26710914 26710921 4 82 11.0 5.0 8.0 0.4 86 chr3R 26710835 intron amon - chr3R 26710878 intron amon - chr3R 26710921 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-491 1305 chr3R 26710842 26710856 chr3R 26710912 26710940 6 82 6.0 4.5 5.2 1.0 98 chr3R 26710842 intron amon - chr3R 26710891 intron amon - chr3R 26710940 intron amon - chr3R_6_26710001 chr3R_26710001 RAL-491 1306 chr3R 26770241 26770274 chr3R 26770318 26770339 7 75 1.5 3.5 2.5 2.0 98 chr3R 26770241 intergenic CR45563 + chr3R 26770290 intergenic CR45563 + chr3R 26770339 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-491 1307 chr3R 26810552 26810585 chr3R 26811036 26811067 roo 9 483 0.5 4.5 2.5 2.6 515 chr3R 26810552 intron Tl + chr3R 26810810 intron Tl + chr3R 26811067 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-491 1308 chr3R 26899655 26899683 chr3R 26899774 26899806 11 119 2.0 8.0 5.0 1.8 151 chr3R 26899655 intron T48 + chr3R 26899730 intron T48 + chr3R 26899806 intron T48 + chr3R_11_26895001 chr3R_26895001 RAL-491 1309 chr3R 26951893 26952102 chr3R 26951998 26952186 6 98 0.0 1.0 0.5 4.0 293 chr3R 26951893 exon CG6330 - chr3R 26952040 intron CG6330 - chr3R 26952186 intron CG6330 - chr3R_6_26950001 chr3R_26950001 RAL-491 1310 chr3R 27140531 27140544 chr3R 27148126 27148153 412 4 7606 5.5 7.0 6.2 0.6 7622 chr3R 27140531 intron CG6051 - chr3R 27144342 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-491 1311 chr3R 27300860 27300876 chr3R 27300952 27300967 7 89 3.5 1.0 2.2 2.2 107 chr3R 27300860 intron CG3339 - chr3R 27300914 intron CG3339 - chr3R 27300967 intron CG3339 - chr3R_7_27300001 chr3R_27300001 RAL-491 1312 chr3R 27315999 27316011 chr3R 27316070 27316081 10 74 3.5 2.5 3.0 2.5 82 chr3R 27315999 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316081 intron CG3339 - chr3R_10_27315001 chr3R_27315001 RAL-491 1313 chr3R 27342803 27342825 chr3R 27351375 27351391 Tirant 11 8576 0.0 4.0 2.0 3.7 8588 chr3R 27342803 intron CG42534 + chr3R 27347097 intron CG42534 + chr3R 27351391 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-491 1314 chr3R 27410330 27410332 chr3R 27410506 27410523 4 189 1.0 3.5 2.2 1.2 193 chr3R 27410330 intron side - chr3R 27410426 intron side - chr3R 27410523 intron side - chr3R_4_27410001 chr3R_27410001 RAL-491 1315 chr3R 27496592 27496601 chr3R 27496697 27496706 5 104 7.0 3.5 5.2 0.8 114 chr3R 27496592 intergenic not near genes chr3R 27496649 intergenic not near genes chr3R 27496706 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-491 1316 chr3R 27574123 27574132 chr3R 27574505 27574531 5 387 4.5 1.5 3.0 1.2 408 chr3R 27574123 intron wdb - chr3R 27574327 intron wdb - chr3R 27574531 intron wdb - chr3R_5_27570001 chr3R_27570001 RAL-491 1317 chr3R 27619703 27619728 chr3R 27619818 27619828 9 111 2.5 2.5 2.5 2.6 125 chr3R 27619703 intron Tusp + chr3R 27619766 intron Tusp + chr3R 27619828 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-491 1318 chr3R 27789098 27789114 chr3R 27789156 27789183 4 65 1.5 0.5 1.0 2.0 85 chr3R 27789098 exon CG34353 - chr3R 27789140 intron CG34353 - chr3R 27789183 intron CG34353 - chr3R_4_27785001 chr3R_27785001 RAL-491 1319 chr3R 27799748 27799777 chr3R 27800126 27800126 5 371 4.0 4.5 4.2 1.0 378 chr3R 27799748 intron CG34353 - chr3R 27799937 intron CG34353 - chr3R 27800126 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-491 1320 chr3R 27856758 27856787 chr3R 27858240 27858269 hopper2 10 1479 3.0 1.5 2.2 3.1 1511 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-491 1321 chr3R 27875703 27875729 chr3R 27882758 27882783 297 7 7052 3.5 2.5 3.0 1.8 7080 chr3R 27875703 intron CG34353 - chr3R 27879243 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-491 1322 chr3R 28068506 28068528 chr3R 28073935 28073961 I-element 11 5436 2.0 3.0 2.5 3.1 5455 chr3R 28068506 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-491 1323 chr3R 28103324 28103355 chr3R 28103415 28103422 5 85 2.0 0.5 1.2 2.3 98 chr3R 28103324 intergenic not near genes chr3R 28103373 intergenic not near genes chr3R 28103422 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-491 1324 chr3R 28118868 28118882 chr3R 28118939 28118947 7 73 3.0 5.5 4.2 1.3 79 chr3R 28118868 intergenic not near genes chr3R 28118908 intergenic not near genes chr3R 28118947 intergenic not near genes chr3R_7_28115001 chr3R_28115001 RAL-491 1325 chr3R 28126730 28126755 chr3R 28126814 28126831 5 81 4.5 3.0 3.8 1.0 101 chr3R 28126730 intergenic not near genes chr3R 28126780 intergenic not near genes chr3R 28126831 intergenic not near genes chr3R_5_28125001 chr3R_28125001 RAL-491 1326 chr3R 28132497 28132517 chr3R 28132576 28132576 4 75 3.0 1.0 2.0 1.3 79 chr3R 28132497 intergenic not near genes chr3R 28132536 intergenic not near genes chr3R 28132576 intergenic not near genes chr3R_4_28130001 chr3R_28130001 RAL-491 1327 chr3R 28172966 28172991 chr3R 28173123 28173147 5 156 2.5 2.0 2.2 1.6 181 chr3R 28172966 intron CG34354 + chr3R 28173056 intron CG34354 + chr3R 28173147 intron CG34354 + chr3R_5_28170001 chr3R_28170001 RAL-491 1328 chr3R 28253341 28253367 chr3R 28255851 28255877 jockey 10 2506 4.0 2.0 3.0 2.5 2536 chr3R 28253341 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255877 intergenic not near genes chr3R_10_28250001 chr3R_28250001 RAL-491 1329 chr3R 28302115 28302124 chr3R 28302542 28302563 jockey 5 434 4.0 2.5 3.2 1.2 448 chr3R 28302115 intergenic not near genes chr3R 28302339 intergenic not near genes chr3R 28302563 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-491 1330 chr3R 28303823 28303840 chr3R 28306036 28306053 9 2216 15.0 18.5 16.8 0.5 2230 chr3R 28303823 exon CG12516 - chr3R 28304938 intergenic CG12516 - chr3R 28306053 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-491 1331 chr3R 28345647 28345670 chr3R 28345723 28345730 5 71 2.0 0.0 1.0 2.5 83 chr3R 28345647 intergenic Moca-cyp + chr3R 28345688 intergenic not near genes chr3R 28345730 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-491 1332 chr3R 28390118 28390137 chr3R 28390196 28390215 7 78 5.0 3.0 4.0 1.4 97 chr3R 28390118 intergenic not near genes chr3R 28390166 intergenic not near genes chr3R 28390215 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-491 1333 chr3R 28393704 28393723 chr3R 28393800 28393823 7 98 2.5 2.0 2.2 2.2 119 chr3R 28393704 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393823 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-491 1334 chr3R 28407729 28407740 chr3R 28407815 28407822 6 83 1.0 5.5 3.2 1.4 93 chr3R 28407729 intergenic not near genes chr3R 28407776 intergenic not near genes chr3R 28407822 intergenic not near genes chr3R_6_28405001 chr3R_28405001 RAL-491 1335 chr3R 28633204 28633220 chr3R 28633272 28633300 7 76 6.0 3.0 4.5 1.3 96 chr3R 28633204 intron CG10011 - chr3R 28633252 intron CG10011 - chr3R 28633300 intron CG10011 - chr3R_7_28630001 chr3R_28630001 RAL-491 1336 chr3R 28758284 28758313 chr3R 28763901 28763917 roo 7 5614 2.0 0.0 1.0 3.5 5633 chr3R 28758284 intergenic aqrs - chr3R 28761100 intergenic not near genes chr3R 28763917 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-491 1337 chr3R 28763902 28763914 chr3R 28771344 28771357 Stalker4 5 7443 0.0 4.0 2.0 1.7 7455 chr3R 28763902 intergenic not near genes chr3R 28767630 intergenic not near genes chr3R 28771357 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-491 1338 chr3R 28792875 28792890 chr3R 28797970 28797980 jockey 5 5092 3.0 3.0 3.0 1.2 5105 chr3R 28792875 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797980 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-491 1339 chr3R 21907534 21907536 chr3R 28831801 28831801 53 6924266 21.5 17.0 19.2 2.6 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_53_25365001 chr3R_25365001 RAL-491 1340 chr3R 21907534 21907536 chr3R 28831802 28831802 33 6924267 21.5 17.0 19.2 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-491 1341 chr3R 28960517 28960532 chr3R 28960596 28960617 5 84 2.5 2.5 2.5 1.4 100 chr3R 28960517 intron CG14521 - chr3R 28960567 intron CG14521 - chr3R 28960617 intron CG14521 - chr3R_5_28960001 chr3R_28960001 RAL-491 1342 chr3R 28968418 28968429 chr3R 28968494 28968505 5 77 6.0 2.0 4.0 1.0 87 chr3R 28968418 intron CG14521 - chr3R 28968462 intron CG14521 - chr3R 28968505 intron CG14521 - chr3R_5_28965001 chr3R_28965001 RAL-491 1343 chr3R 29049175 29049189 chr3R 29049256 29049270 5 81 0.5 2.0 1.2 2.3 95 chr3R 29049175 intergenic Pkc98E +,CG11837 + chr3R 29049222 intergenic Pkc98E +,CG11837 + chr3R 29049270 intergenic Pkc98E +,CG11837 + chr3R_5_29045001 chr3R_29045001 RAL-491 1344 chr3R 29053735 29053753 chr3R 29054245 29054258 6 507 4.0 0.5 2.2 1.9 523 chr3R 29053735 exon CG11842 + chr3R 29053996 intergenic CG11842 +,CG11843 + chr3R 29054258 intergenic CG11843 +,CG11842 + chr3R_6_29050001 chr3R_29050001 RAL-491 1345 chr3R 29059369 29059401 chr3R 29059464 29059496 10 92 3.5 1.5 2.5 2.9 127 chr3R 29059369 3` UTR Cul5 - chr3R 29059432 3` UTR Cul5 - chr3R 29059496 3` UTR Cul5 - chr3R_10_29055001 chr3R_29055001 RAL-491 1346 chr3R 29070054 29070080 chr3R 29070135 29070160 5 81 3.0 1.0 2.0 1.7 106 chr3R 29070054 intron CG11873 + chr3R 29070107 intron CG11873 + chr3R 29070160 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-491 1347 chr3R 29079383 29079410 chr3R 29080755 29080781 NOF 8 1371 4.5 3.0 3.8 1.7 1398 chr3R 29079383 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080781 intron CG11873 + chr3R_8_29080001 chr3R_29080001 RAL-491 1348 chr3R 29213070 29213085 chr3R 29213144 29213167 7 82 4.5 5.0 4.8 1.2 97 chr3R 29213070 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213167 intergenic not near genes chr3R_7_29210001 chr3R_29210001 RAL-491 1349 chr3R 29237260 29237285 chr3R 29239281 29239304 5 2019 17.5 6.5 12.0 0.4 2044 chr3R 29237260 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239304 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-491 1350 chr3R 29239223 29239246 chr3R 29245513 29245535 5 6287 5.5 11.5 8.5 0.5 6312 chr3R 29239223 exon CG31427 - chr3R 29242379 exon CG31445 - chr3R 29245535 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-491 1351 chr3R 29332290 29332307 chr3R 29332367 29332379 5 76 2.5 5.5 4.0 1.0 89 chr3R 29332290 intergenic not near genes chr3R 29332334 intergenic not near genes chr3R 29332379 intergenic not near genes chr3R_5_29330001 chr3R_29330001 RAL-491 1352 chr3R 29406640 29406650 chr3R 29407896 29407922 jockey 6 1264 1.5 4.0 2.8 1.6 1282 chr3R 29406640 intron Ptp99A + chr3R 29407281 intron Ptp99A + chr3R 29407922 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-491 1353 chr3R 29449355 29449387 chr3R 29449432 29449462 11 75 2.5 2.5 2.5 3.1 107 chr3R 29449355 intron Ptp99A + chr3R 29449408 intron Ptp99A + chr3R 29449462 intron Ptp99A + chr3R_11_29445001 chr3R_29445001 RAL-491 1354 chr3R 29472011 29472034 chr3R 29472104 29472127 7 89 2.5 2.5 2.5 2.0 116 chr3R 29472011 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-491 1355 chr3R 29505914 29505926 chr3R 29505975 29506002 7 72 1.5 4.5 3.0 1.8 88 chr3R 29505914 intergenic not near genes chr3R 29505958 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_7_29505001 chr3R_29505001 RAL-491 1356 chr3R 29516570 29516600 chr3R 29516654 29516671 22 81 5.0 2.5 3.8 4.6 101 chr3R 29516570 intergenic CG2014 + chr3R 29516620 intergenic CG2014 + chr3R 29516671 intergenic CG2014 + chr3R_22_29515001 chr3R_29515001 RAL-491 1357 chr3R 29590379 29590403 chr3R 29590472 29590493 13 91 1.5 4.0 2.8 3.4 114 chr3R 29590379 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590493 intron CG31041 - chr3R_13_29590001 chr3R_29590001 RAL-491 1358 chr3R 29645837 29645856 chr3R 29645918 29645923 9 78 5.5 6.5 6.0 1.3 86 chr3R 29645837 intron Dop1R2 - chr3R 29645880 intron Dop1R2 - chr3R 29645923 intron Dop1R2 - chr3R_9_29645001 chr3R_29645001 RAL-491 1359 chr3R 29758939 29758957 chr3R 29759016 29759035 11 77 5.0 3.0 4.0 2.2 96 chr3R 29758939 3` UTR CR44953 - chr3R 29758987 3` UTR CR44953 - chr3R 29759035 3` UTR CR44953 - chr3R_11_29755001 chr3R_29755001 RAL-491 1360 chr3R 29758958 29758966 chr3R 29759014 29759028 5 70 3.0 3.0 3.0 1.2 70 chr3R 29758958 3` UTR CR44953 - chr3R 29758993 3` UTR CR44953 - chr3R 29759028 3` UTR CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-491 1361 chr3R 29882021 29882053 chr3R 29891178 29891202 roo 8 9153 3.5 3.5 3.5 1.8 9181 chr3R 29882021 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891202 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-491 1362 chr3R 29950591 29950599 chr3R 29950655 29950656 4 64 1.5 1.5 1.5 1.6 65 chr3R 29950591 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950656 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-491 1363 chr3R 29963480 29963510 chr3R 29963582 29963612 5 101 0.5 3.5 2.0 1.7 132 chr3R 29963480 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-491 1364 chr3R 29983004 29983010 chr3R 29983132 29983138 5 128 5.5 3.0 4.2 1.0 134 chr3R 29983004 intergenic CG7896 + chr3R 29983071 intergenic CG7896 + chr3R 29983138 intergenic CG7896 + chr3R_5_29980001 chr3R_29980001 RAL-491 1365 chr3R 29983011 29983024 chr3R 29983124 29983152 8 120 2.5 2.5 2.5 2.3 141 chr3R 29983011 intergenic CG7896 + chr3R 29983082 intergenic CG7896 + chr3R 29983152 intergenic CG7896 + chr3R_8_29980001 chr3R_29980001 RAL-491 1366 chr3R 30084850 30084882 chr3R 30086317 30086345 hobo 9 1465 4.0 6.0 5.0 1.5 1495 chr3R 30084850 intron sima + chr3R 30085598 intron sima + chr3R 30086345 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-491 1367 chr3R 30088613 30088627 chr3R 30088699 30088713 8 86 0.0 1.0 0.5 5.3 100 chr3R 30088613 intron sima + chr3R 30088663 intron sima + chr3R 30088713 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-491 1368 chr3R 30132823 30132845 chr3R 30132911 30132933 12 87 5.5 2.0 3.8 2.5 110 chr3R 30132823 intergenic Tpi -,CG31029 - chr3R 30132878 intergenic Tpi -,CG31029 - chr3R 30132933 intergenic Tpi - chr3R_12_30130001 chr3R_30130001 RAL-491 1369 chr3R 30175698 30175727 chr3R 30175782 30175810 9 85 1.0 2.5 1.8 3.2 112 chr3R 30175698 intergenic CG1983 - chr3R 30175754 intergenic CG1983 - chr3R 30175810 3` UTR CG1983 - chr3R_9_30175001 chr3R_30175001 RAL-491 1370 chr3R 30181117 30181134 chr3R 30181177 30181179 4 57 4.5 1.5 3.0 1.0 62 chr3R 30181117 3` UTR Bet5 + chr3R 30181148 3` UTR Bet5 + chr3R 30181179 3` UTR Bet5 + chr3R_4_30180001 chr3R_30180001 RAL-491 1371 chr3R 30210672 30210673 chr3R 30210740 30210747 4 74 0.0 9.0 4.5 0.7 75 chr3R 30210672 intergenic CecA1 +,Anp + chr3R 30210710 intergenic CecA1 +,Anp + chr3R 30210747 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-491 1372 chr3R 30238783 30238796 chr3R 30239942 30239961 1360 4 1164 0.0 0.0 0.0 4.0 1178 chr3R 30238783 intergenic not near genes chr3R 30239372 intergenic not near genes chr3R 30239961 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-491 1373 chr3R 30268434 30268446 chr3R 30268495 30268516 5 70 2.5 4.0 3.2 1.2 82 chr3R 30268434 intergenic not near genes chr3R 30268475 intergenic not near genes chr3R 30268516 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-491 1374 chr3R 30396229 30396246 chr3R 30404482 30404512 roo 9 8264 2.0 1.5 1.8 3.2 8283 chr3R 30396229 intergenic not near genes chr3R 30400370 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_9_30400001 chr3R_30400001 RAL-491 1375 chr3R 30480475 30480504 chr3R 30482943 30482967 jockey 14 2466 2.5 7.0 4.8 2.4 2492 chr3R 30480475 intron PH4alphaEFB + chr3R 30481721 intron PH4alphaEFB + chr3R 30482967 intron PH4alphaEFB + chr3R_14_30480001 chr3R_30480001 RAL-491 1376 chr3R 30498409 30498431 chr3R 30498609 30498631 11 198 0.0 3.5 1.8 3.9 222 chr3R 30498409 intron PH4alphaNE1 - chr3R 30498520 intron PH4alphaNE1 - chr3R 30498631 intron PH4alphaNE1 - chr3R_11_30495001 chr3R_30495001 RAL-491 1377 chr3R 30599491 30599513 chr3R 30599812 30599821 7 318 1.5 1.0 1.2 3.2 330 chr3R 30599491 intron CG2246 - chr3R 30599656 intron CG2246 - chr3R 30599821 intron CG2246 - chr3R_7_30595001 chr3R_30595001 RAL-491 1378 chr3R 30620930 30620949 chr3R 30621085 30621104 11 154 3.5 3.5 3.5 2.4 174 chr3R 30620930 intron CG44954 - chr3R 30621017 intron CG44954 - chr3R 30621104 intron CG44954 - chr3R_11_30620001 chr3R_30620001 RAL-491 1379 chr3R 30627622 30627637 chr3R 30627686 30627702 5 58 4.0 7.5 5.8 0.7 80 chr3R 30627622 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627702 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-491 1380 chr3R 30679519 30679549 chr3R 30686988 30687018 blood 7 7466 4.5 3.5 4.0 1.4 7499 chr3R 30679519 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-491 1381 chr3R 30761458 30761482 chr3R 30761540 30761565 8 83 4.0 3.5 3.8 1.7 107 chr3R 30761458 intergenic not near genes chr3R 30761512 intergenic not near genes chr3R 30761565 intergenic not near genes chr3R_8_30760001 chr3R_30760001 RAL-491 1382 chr3R 30818824 30818844 chr3R 30820379 30820409 1360 4 1556 4.5 3.5 4.0 0.8 1585 chr3R 30818824 intron cindr + chr3R 30819616 intron cindr + chr3R 30820409 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-491 1383 chr3R 30859418 30859427 chr3R 30859490 30859505 5 77 2.0 2.0 2.0 1.7 87 chr3R 30859418 intergenic not near genes chr3R 30859462 intergenic not near genes chr3R 30859505 intergenic not near genes chr3R_5_30855001 chr3R_30855001 RAL-491 1384 chr3R 31029690 31029725 chr3R 31029775 31029810 6 85 0.5 7.5 4.0 1.2 120 chr3R 31029690 intergenic not near genes chr3R 31029750 intergenic not near genes chr3R 31029810 intergenic not near genes chr3R_6_31025001 chr3R_31025001 RAL-491 1385 chr3R 31047214 31047239 chr3R 31047506 31047527 10 292 4.0 2.0 3.0 2.5 313 chr3R 31047214 intergenic CanA1 + chr3R 31047370 intergenic not near genes chr3R 31047527 intergenic not near genes chr3R_10_31045001 chr3R_31045001 RAL-491 1386 chr3R 31069646 31069672 chr3R 31069739 31069767 6 93 3.0 3.0 3.0 1.5 121 chr3R 31069646 intron Sox100B + chr3R 31069706 intron Sox100B + chr3R 31069767 intron Sox100B + chr3R_6_31065001 chr3R_31065001 RAL-491 1387 chr3R 31074229 31074261 chr3R 31081827 31081853 springer 10 7594 2.0 1.0 1.5 4.0 7624 chr3R 31074229 intron Sox100B + chr3R 31078041 intron Sox100B + chr3R 31081853 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-491 1388 chr3R 31099019 31099052 chr3R 31099112 31099140 10 90 2.5 4.5 3.5 2.2 121 chr3R 31099019 exon CG15553 - chr3R 31099080 intron CG15553 - chr3R 31099140 exon CG15553 - chr3R_10_31095001 chr3R_31095001 RAL-491 1389 chr3R 31135008 31135023 chr3R 31135137 31135150 5 127 3.0 1.0 2.0 1.7 142 chr3R 31135008 intron Gycbeta100B + chr3R 31135079 intron Gycbeta100B + chr3R 31135150 intron Gycbeta100B + chr3R_5_31135001 chr3R_31135001 RAL-491 1390 chr3R 31279379 31279408 chr3R 31285570 31285573 diver 8 6185 5.5 6.5 6.0 1.1 6194 chr3R 31279379 intergenic not near genes chr3R 31282476 intergenic not near genes chr3R 31285573 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-491 1391 chr3R 31292506 31292529 chr3R 31292737 31292749 7 228 2.5 1.5 2.0 2.3 243 chr3R 31292506 intergenic not near genes chr3R 31292628 intergenic not near genes chr3R 31292749 intergenic not near genes chr3R_7_31290001 chr3R_31290001 RAL-491 1392 chr3R 31413093 31413120 chr3R 31418292 31418311 copia 7 5198 2.5 1.5 2.0 2.3 5218 chr3R 31413093 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-491 1393 chr3R 31426882 31426910 chr3R 31426973 31427001 8 90 2.0 1.5 1.8 2.9 119 chr3R 31426882 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427001 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-491 1394 chr3R 31435364 31435385 chr3R 31435516 31435537 10 149 4.5 3.5 4.0 2.0 173 chr3R 31435364 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435537 intron Gprk2 + chr3R_10_31435001 chr3R_31435001 RAL-491 1395 chr3R 31453221 31453250 chr3R 31453295 31453324 9 76 3.0 6.0 4.5 1.6 103 chr3R 31453221 intron Gprk2 + chr3R 31453272 intron Gprk2 + chr3R 31453324 exon Gprk2 + chr3R_9_31450001 chr3R_31450001 RAL-491 1396 chr3R 31530837 31530847 chr3R 31531144 31531149 8 313 3.0 6.5 4.8 1.4 312 chr3R 31530837 intergenic not near genes chr3R 31530993 intergenic not near genes chr3R 31531149 intergenic not near genes chr3R_8_31530001 chr3R_31530001 RAL-491 1397 chr3R 31533501 31533533 chr3R 31533858 31533872 12 354 2.5 3.5 3.0 3.0 371 chr3R 31533501 intergenic not near genes chr3R 31533686 intergenic not near genes chr3R 31533872 intergenic not near genes chr3R_12_31530001 chr3R_31530001 RAL-491 1398 chr3R 31691532 31691563 chr3R 31696297 31696327 Doc 9 4758 4.0 5.5 4.8 1.6 4795 chr3R 31691532 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-491 1399 chr3R 31815927 31815946 chr3R 31816009 31816028 5 80 2.5 7.5 5.0 0.8 101 chr3R 31815927 intron RhoGAP100F + chr3R 31815978 intron RhoGAP100F + chr3R 31816028 intron RhoGAP100F + chr3R_5_31815001 chr3R_31815001 RAL-491 1400 chr3R 31858201 31858206 chr3R 31858296 31858306 4 100 0.0 5.0 2.5 1.1 105 chr3R 31858201 intron heph - chr3R 31858254 intron heph - chr3R 31858306 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-491 1401 chr3R 31977853 31977870 chr3R 31977937 31977953 7 82 1.5 5.0 3.2 1.7 100 chr3R 31977853 intron heph - chr3R 31977903 intron heph - chr3R 31977953 intron heph - chr3R_7_31975001 chr3R_31975001 RAL-491 1402 chr3R 31997995 31998025 chr3R 32005462 32005480 blood 9 7466 2.5 3.0 2.8 2.4 7485 chr3R 31997995 intron heph - chr3R 32001738 intron heph - chr3R 32005480 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-491 1403 chr3R 32009993 32010015 chr3R 32010118 32010140 6 125 1.0 5.5 3.2 1.4 147 chr3R 32009993 intron heph - chr3R 32010066 intron heph - chr3R 32010140 intron heph - chr3R_6_32010001 chr3R_32010001 RAL-491 1404 chr3R 32047166 32047168 chr3R 32047419 32047421 5 253 5.5 1.0 3.2 1.2 255 chr3R 32047166 3` UTR krz - chr3R 32047294 3` UTR krz - chr3R 32047421 3` UTR krz - chr3R_5_32045001 chr3R_32045001 RAL-491 1405 chr4 76495 76509 chr4 81936 81938 I-element 4 5435 4.5 1.0 2.8 1.1 5443 chr4 76495 intron pan + chr4 79216 intron pan + chr4 81938 intron pan + chr4_4_75001 chr4_75001 RAL-491 1406 chr4 264983 265002 chr4 265186 265205 5 203 0.0 1.0 0.5 3.3 222 chr4 264983 3` UTR RhoGAP102A + chr4 265094 3` UTR RhoGAP102A + chr4 265205 3` UTR RhoGAP102A + chr4_5_265001 chr4_265001 RAL-491 1407 chr4 662194 662206 chr4 662835 662848 INE-1 4 643 0.0 3.5 1.8 1.4 654 chr4 662194 intron gw - chr4 662521 intron gw - chr4 662848 5` UTR gw - chr4_4_660001 chr4_660001 RAL-491 1408 chr4 671605 671635 chr4 680188 680218 Tirant 10 8582 6.0 7.5 6.8 1.3 8613 chr4 671605 intron CG11360 + chr4 675912 intron CG11360 + chr4 680218 intron CG11360 + chr4_10_675001 chr4_675001 RAL-491 1409 chr4 852913 852930 chr4 853275 853286 5 360 1.0 3.0 2.0 1.7 373 chr4 852913 intergenic not near genes chr4 853100 intergenic not near genes chr4 853286 intergenic CG11148 - chr4_5_850001 chr4_850001 RAL-491 1410 chrX 264183 264211 chrX 264270 264297 10 88 2.0 2.0 2.0 3.3 114 chrX 264183 intron CR43906 + chrX 264240 intron CR43906 + chrX 264297 intron CR43906 + chrX_10_260001 chrX_260001 RAL-491 1411 chrX 295862 295877 chrX 303481 303490 412 4 7616 1.5 3.0 2.2 1.2 7628 chrX 295862 intron CG3777 + chrX 299676 intron CG3777 + chrX 303490 intron CG3777 + chrX_4_295001 chrX_295001 RAL-491 1412 chrX 428423 428451 chrX 434601 434635 3S18 6 6180 1.5 1.0 1.2 2.7 6212 chrX 428423 intron CG32816 - chrX 431529 intron CG32816 - chrX 434635 intron CG32816 - chrX_6_430001 chrX_430001 RAL-491 1413 chrX 547630 547664 chrX 547874 547908 11 243 3.0 2.5 2.8 2.9 278 chrX 547630 intron Appl + chrX 547769 intron Appl + chrX 547908 intron Appl + chrX_11_545001 chrX_545001 RAL-491 1414 chrX 617980 618004 chrX 618059 618083 6 77 2.5 1.5 2.0 2.0 103 chrX 617980 intron CG13366 - chrX 618032 intron CG13366 - chrX 618083 intron CG13366 - chrX_6_615001 chrX_615001 RAL-491 1415 chrX 667647 667680 chrX 667729 667759 10 79 1.0 1.0 1.0 5.0 112 chrX 667647 intergenic not near genes chrX 667703 intergenic not near genes chrX 667759 intergenic not near genes chrX_10_665001 chrX_665001 RAL-491 1416 chrX 670276 670292 chrX 670356 670370 5 79 0.0 0.5 0.2 4.2 94 chrX 670276 intergenic not near genes chrX 670323 intergenic not near genes chrX 670370 intergenic not near genes chrX_5_670001 chrX_670001 RAL-491 1417 chrX 680839 680870 chrX 680922 680953 8 80 4.0 2.0 3.0 2.0 114 chrX 680839 intergenic not near genes chrX 680896 intergenic not near genes chrX 680953 intergenic not near genes chrX_8_680001 chrX_680001 RAL-491 1418 chrX 706810 706829 chrX 707162 707191 6 359 0.5 3.0 1.8 2.1 381 chrX 706810 intron sdk + chrX 707000 intron sdk + chrX 707191 intron sdk + chrX_6_705001 chrX_705001 RAL-491 1419 chrX 718334 718355 chrX 718414 718435 5 80 3.0 3.5 3.2 1.2 101 chrX 718334 intron sdk + chrX 718384 intron sdk + chrX 718435 intron sdk + chrX_5_715001 chrX_715001 RAL-491 1420 chrX 778128 778160 chrX 778217 778250 9 90 2.0 1.5 1.8 3.2 122 chrX 778128 intron fz3 + chrX 778189 intron fz3 + chrX 778250 intron fz3 + chrX_9_775001 chrX_775001 RAL-491 1421 chrX 806791 806815 chrX 806883 806911 4 94 1.5 0.0 0.8 2.2 120 chrX 806791 intron Sec22 + chrX 806851 intron Sec22 + chrX 806911 intron Sec22 + chrX_4_805001 chrX_805001 RAL-491 1422 chrX 906703 906721 chrX 908492 908510 S-element 6 1787 1.5 2.5 2.0 2.0 1807 chrX 906703 intron CG43867 - chrX 907606 intron CG43867 - chrX 908510 intron CG43867 - chrX_6_905001 chrX_905001 RAL-491 1423 chrX 918374 918399 chrX 918458 918483 6 84 2.0 3.5 2.8 1.6 109 chrX 918374 intron CG43867 - chrX 918428 intron CG43867 - chrX 918483 intron CG43867 - chrX_6_915001 chrX_915001 RAL-491 1424 chrX 1518045 1518064 chrX 1523447 1523466 jockey 4 5402 3.5 4.0 3.8 0.8 5421 chrX 1518045 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523466 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-491 1425 chrX 1627975 1628001 chrX 1635440 1635469 gtwin 10 7467 3.5 3.0 3.2 2.4 7494 chrX 1627975 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-491 1426 chrX 1674863 1674873 chrX 1674936 1674949 4 75 6.0 0.0 3.0 1.0 86 chrX 1674863 3` UTR CG32809 - chrX 1674906 3` UTR CG32809 - chrX 1674949 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-491 1427 chrX 1894204 1894236 chrX 1894293 1894320 6 83 2.5 5.0 3.8 1.2 116 chrX 1894204 intron arm - chrX 1894262 intron arm - chrX 1894320 intron arm - chrX_6_1890001 chrX_1890001 RAL-491 1428 chrX 1968287 1968362 chrX 1968501 1968525 4 201 7.0 21.5 14.2 0.3 238 chrX 1968287 intron Hr4 + chrX 1968406 intron Hr4 + chrX 1968525 intron Hr4 + chrX_4_1965001 chrX_1965001 RAL-491 1429 chrX 2069374 2069401 chrX 2069474 2069501 10 98 1.5 0.5 1.0 5.0 127 chrX 2069374 intron,exon CG4199 -,CG4194 + chrX 2069438 intron,3` UTR CG4199 -,CG4194 + chrX 2069501 intron,3` UTR CG4199 -,CG4194 + chrX_10_2065001 chrX_2065001 RAL-491 1430 chrX 2578817 2578841 chrX 2578921 2578941 9 101 3.0 2.5 2.8 2.4 124 chrX 2578817 intergenic Pdfr +,Vha36-3 - chrX 2578879 intergenic Vha36-3 -,Pdfr + chrX 2578941 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-491 1431 chrX 2759878 2759891 chrX 2759966 2759980 6 88 2.0 5.0 3.5 1.3 102 chrX 2759878 intron kirre + chrX 2759929 intron kirre + chrX 2759980 intron kirre + chrX_6_2755001 chrX_2755001 RAL-491 1432 chrX 2818833 2818862 chrX 2818934 2818951 6 94 2.0 2.0 2.0 2.0 118 chrX 2818833 intron kirre + chrX 2818892 intron kirre + chrX 2818951 intron kirre + chrX_6_2815001 chrX_2815001 RAL-491 1433 chrX 2844908 2844925 chrX 2852309 2852335 mdg1 4 7408 1.5 1.0 1.2 1.8 7427 chrX 2844908 intron kirre + chrX 2848622 intron kirre + chrX 2852335 intron kirre + chrX_4_2845001 chrX_2845001 RAL-491 1434 chrX 2888117 2888147 chrX 2888191 2888221 8 73 0.0 2.5 1.2 3.6 104 chrX 2888117 intron kirre + chrX 2888169 intron kirre + chrX 2888221 intron kirre + chrX_8_2885001 chrX_2885001 RAL-491 1435 chrX 2917420 2917446 chrX 2917571 2917603 7 154 3.0 2.0 2.5 2.0 183 chrX 2917420 intron kirre + chrX 2917512 intron kirre + chrX 2917603 intron kirre + chrX_7_2915001 chrX_2915001 RAL-491 1436 chrX 3187734 3187737 chrX 3187816 3187818 4 82 2.0 0.5 1.2 1.8 84 chrX 3187734 intron dnc + chrX 3187776 intron dnc + chrX 3187818 intron dnc + chrX_4_3185001 chrX_3185001 RAL-491 1437 chrX 3493099 3493123 chrX 3502249 3502264 roo 5 9151 3.5 1.5 2.5 1.4 9165 chrX 3493099 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502264 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-491 1438 chrX 3535417 3535431 chrX 3535500 3535522 6 89 0.5 1.0 0.8 3.3 105 chrX 3535417 intron CG32791 - chrX 3535470 intron CG32791 - chrX 3535522 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-491 1439 chrX 3597109 3597127 chrX 3597197 3597215 4 87 1.5 3.0 2.2 1.2 106 chrX 3597109 intron AstA-R1 + chrX 3597162 intron AstA-R1 + chrX 3597215 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-491 1440 chrX 3597552 3597577 chrX 3619717 3619745 roo 11 22166 3.5 1.5 2.5 3.1 22193 chrX 3597552 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-491 1441 chrX 3630543 3630573 chrX 3630619 3630641 6 74 2.0 0.5 1.2 2.7 98 chrX 3630543 intron AstA-R1 + chrX 3630592 intron AstA-R1 + chrX 3630641 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-491 1442 chrX 3657414 3657437 chrX 3657494 3657515 5 78 2.0 4.0 3.0 1.2 101 chrX 3657414 intron AstA-R1 + chrX 3657464 intron AstA-R1 + chrX 3657515 intron AstA-R1 + chrX_5_3655001 chrX_3655001 RAL-491 1443 chrX 3662483 3662515 chrX 3662565 3662584 4 79 5.5 4.0 4.8 0.7 101 chrX 3662483 intron AstA-R1 + chrX 3662534 intron AstA-R1 + chrX 3662584 intron AstA-R1 + chrX_4_3660001 chrX_3660001 RAL-491 1444 chrX 3726767 3726795 chrX 3730164 3730183 NOF 4 3391 1.5 2.5 2.0 1.3 3416 chrX 3726767 intron tlk + chrX 3728475 intron tlk + chrX 3730183 intron tlk + chrX_4_3725001 chrX_3725001 RAL-491 1445 chrX 3866108 3866130 chrX 3866182 3866193 5 74 1.5 0.5 1.0 2.5 85 chrX 3866108 intron yin - chrX 3866150 intron yin - chrX 3866193 intron yin - chrX_5_3865001 chrX_3865001 RAL-491 1446 chrX 3881286 3881303 chrX 3881409 3881442 9 136 3.0 3.0 3.0 2.2 156 chrX 3881286 intron VhaAC39-1 + chrX 3881364 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-491 1447 chrX 3986882 3986896 chrX 3994509 3994529 412 7 7632 1.0 3.0 2.0 2.3 7647 chrX 3986882 intergenic not near genes chrX 3990706 intergenic not near genes chrX 3994529 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-491 1448 chrX 4093270 4093299 chrX 4093348 4093377 11 76 3.0 4.0 3.5 2.4 107 chrX 4093270 intergenic not near genes chrX 4093324 intergenic not near genes chrX 4093377 intergenic not near genes chrX_11_4090001 chrX_4090001 RAL-491 1449 chrX 4132677 4132689 chrX 4132846 4132856 4 168 2.0 2.0 2.0 1.3 179 chrX 4132677 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132856 intergenic GlcAT-I +,Fas2 - chrX_4_4130001 chrX_4130001 RAL-491 1450 chrX 4157893 4157914 chrX 4164926 4164934 297 6 7032 2.5 2.0 2.2 1.9 7041 chrX 4157893 intron Fas2 - chrX 4161414 intron Fas2 - chrX 4164934 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-491 1451 chrX 4206227 4206241 chrX 4206341 4206353 5 113 0.5 1.5 1.0 2.5 126 chrX 4206227 intergenic Fas2 - chrX 4206290 intergenic Fas2 - chrX 4206353 intergenic Fas2 - chrX_5_4205001 chrX_4205001 RAL-491 1452 chrX 4396988 4397011 chrX 4397062 4397071 9 77 1.0 3.5 2.2 2.8 83 chrX 4396988 intron CR32773 - chrX 4397030 intron CR32773 - chrX 4397071 intron CR32773 - chrX_9_4395001 chrX_4395001 RAL-491 1453 chrX 4763252 4763275 chrX 4763737 4763763 Stalker4 4 484 4.5 2.5 3.5 0.9 511 chrX 4763252 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763763 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-491 1454 chrX 4792387 4792411 chrX 4792815 4792833 jockey 4 428 2.5 5.0 3.8 0.8 446 chrX 4792387 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792833 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-491 1455 chrX 4827970 4828002 chrX 4835341 4835355 Stalker4 10 7364 1.0 3.0 2.0 3.3 7385 chrX 4827970 intergenic not near genes chrX 4831662 intergenic not near genes chrX 4835355 intergenic not near genes chrX_10_4830001 chrX_4830001 RAL-491 1456 chrX 4990041 4990065 chrX 4997255 4997270 roo 6 7212 4.0 0.5 2.2 1.9 7229 chrX 4990041 intron CR44833 - chrX 4993656 intron CR44833 - chrX 4997270 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-491 1457 chrX 5096280 5096304 chrX 5103843 5103869 springer 6 7564 3.5 4.0 3.8 1.2 7589 chrX 5096280 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-491 1458 chrX 5131411 5131433 chrX 5131477 5131489 6 64 4.0 1.5 2.8 1.6 78 chrX 5131411 intron,intron CG15465 +,rg + chrX 5131450 intron,intron CG15465 +,rg + chrX 5131489 intron,intron CG15465 +,rg + chrX_6_5130001 chrX_5130001 RAL-491 1459 chrX 5134796 5134830 chrX 5134897 5134930 15 100 5.0 4.0 4.5 2.7 134 chrX 5134796 intron,intron CG15465 +,rg + chrX 5134863 intron,intron CG15465 +,rg + chrX 5134930 intron,intron CG15465 +,rg + chrX_15_5130001 chrX_5130001 RAL-491 1460 chrX 5159730 5159746 chrX 5159823 5159841 4 94 1.5 1.0 1.2 1.8 111 chrX 5159730 intron,intron CG15465 +,rg + chrX 5159786 intron,intron CG15465 +,rg + chrX 5159841 intron,intron CG15465 +,rg + chrX_4_5155001 chrX_5155001 RAL-491 1461 chrX 5220390 5220409 chrX 5220631 5220638 7 239 0.0 3.0 1.5 2.8 248 chrX 5220390 intron,intron CG15465 +,rg + chrX 5220514 intron,intron CG15465 +,rg + chrX 5220638 intron,intron CG15465 +,rg + chrX_7_5220001 chrX_5220001 RAL-491 1462 chrX 5473589 5473617 chrX 5473665 5473677 5 70 1.0 3.0 2.0 1.7 88 chrX 5473589 intron SPR + chrX 5473633 intron SPR + chrX 5473677 intron SPR + chrX_5_5470001 chrX_5470001 RAL-491 1463 chrX 5481071 5481091 chrX 5485025 5485059 I-element 5 3965 0.5 1.5 1.0 2.5 3988 chrX 5481071 intron SPR + chrX 5483065 intron SPR + chrX 5485059 intron SPR + chrX_5_5480001 chrX_5480001 RAL-491 1464 chrX 5524852 5524873 chrX 5528710 5528733 412 7 3861 0.5 2.5 1.5 2.8 3881 chrX 5524852 intergenic snoRNA:Psi28S-3342 - chrX 5526792 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-491 1465 chrX 5798862 5798890 chrX 5799024 5799052 7 155 0.5 5.5 3.0 1.8 190 chrX 5798862 intergenic not near genes chrX 5798957 intergenic not near genes chrX 5799052 intergenic not near genes chrX_7_5795001 chrX_5795001 RAL-491 1466 chrX 5883821 5883839 chrX 5884062 5884080 pogo 5 241 2.0 3.5 2.8 1.3 259 chrX 5883821 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884080 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-491 1467 chrX 5884167 5884191 chrX 5884403 5884432 pogo 9 240 2.0 0.5 1.2 4.1 265 chrX 5884167 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884432 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-491 1468 chrX 5938470 5938501 chrX 5938556 5938587 4 86 1.0 1.0 1.0 2.0 117 chrX 5938470 intron CG3726 + chrX 5938528 intron CG3726 + chrX 5938587 5` UTR CG3726 + chrX_4_5935001 chrX_5935001 RAL-491 1469 chrX 6003281 6003310 chrX 6003362 6003391 8 80 0.0 4.0 2.0 2.7 110 chrX 6003281 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003391 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-491 1470 chrX 6093318 6093329 chrX 6093392 6093408 5 78 1.0 1.5 1.2 2.3 90 chrX 6093318 intron Nep1 + chrX 6093363 intron Nep1 + chrX 6093408 intron Nep1 + chrX_5_6090001 chrX_6090001 RAL-491 1471 chrX 6171586 6171617 chrX 6179019 6179050 Quasimodo 8 7431 3.5 2.0 2.8 2.1 7464 chrX 6171586 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-491 1472 chrX 6188778 6188784 chrX 6188945 6188954 4 168 3.5 3.5 3.5 0.9 176 chrX 6188778 intron Ca-alpha1T - chrX 6188866 intron Ca-alpha1T - chrX 6188954 intron Ca-alpha1T - chrX_4_6185001 chrX_6185001 RAL-491 1473 chrX 6315168 6315190 chrX 6315292 6315314 4 124 1.0 4.0 2.5 1.1 146 chrX 6315168 intron CG15894 + chrX 6315241 intron CG15894 + chrX 6315314 intron CG15894 + chrX_4_6315001 chrX_6315001 RAL-491 1474 chrX 6335219 6335233 chrX 6337720 6337742 Tirant 5 2507 0.0 1.0 0.5 3.3 2523 chrX 6335219 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337742 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-491 1475 chrX 6392867 6392904 chrX 6397632 6397656 Doc 10 4763 4.0 4.0 4.0 2.0 4789 chrX 6392867 intergenic not near genes chrX 6395262 intergenic not near genes chrX 6397656 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-491 1476 chrX 6562818 6562844 chrX 6571300 6571326 Tirant 8 8480 4.0 2.5 3.2 1.9 8508 chrX 6562818 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571326 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-491 1477 chrX 6897577 6897705 chrX 6897651 6897811 8 96 1.0 1.0 1.0 4.0 234 chrX 6897577 intergenic not near genes chrX 6897694 intergenic not near genes chrX 6897811 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-491 1478 chrX 6976490 6976518 chrX 6976585 6976613 9 94 1.5 1.5 1.5 3.6 123 chrX 6976490 intron ogre - chrX 6976552 intron ogre - chrX 6976613 intron ogre - chrX_9_6975001 chrX_6975001 RAL-491 1479 chrX 6989502 6989534 chrX 6989588 6989621 4 87 3.5 1.0 2.2 1.2 119 chrX 6989502 intron ogre - chrX 6989562 intron ogre - chrX 6989621 intron ogre - chrX_4_6985001 chrX_6985001 RAL-491 1480 chrX 7023601 7023629 chrX 7030991 7031018 Tabor 10 7389 4.5 3.0 3.8 2.1 7417 chrX 7023601 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031018 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-491 1481 chrX 7125243 7125274 chrX 7134402 7134433 roo 9 9158 1.5 4.0 2.8 2.4 9190 chrX 7125243 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134433 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-491 1482 chrX 7322901 7322930 chrX 7322984 7323012 10 82 1.5 2.0 1.8 3.6 111 chrX 7322901 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322956 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323012 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_10_7320001 chrX_7320001 RAL-491 1483 chrX 7741772 7741776 chrX 7741960 7741969 4 193 2.5 3.5 3.0 1.0 197 chrX 7741772 intergenic not near genes chrX 7741870 intergenic not near genes chrX 7741969 intergenic not near genes chrX_4_7740001 chrX_7740001 RAL-491 1484 chrX 7845723 7845759 chrX 7847214 7847224 hopper2 8 1486 1.5 4.0 2.8 2.1 1501 chrX 7845723 intergenic not near genes chrX 7846474 intergenic not near genes chrX 7847224 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-491 1485 chrX 7945042 7945052 chrX 7945129 7945147 7 93 6.5 2.0 4.2 1.3 105 chrX 7945042 intron,intron CG42593 +,l(1)G0193 - chrX 7945094 intron,intron CG42593 +,l(1)G0193 - chrX 7945147 intron,intron CG42593 +,l(1)G0193 - chrX_7_7945001 chrX_7945001 RAL-491 1486 chrX 7960880 7960897 chrX 7960969 7960986 8 89 4.5 2.0 3.2 1.9 106 chrX 7960880 intron,5` UTR sws -,CR45620 + chrX 7960933 intron sws - chrX 7960986 intron sws - chrX_8_7960001 chrX_7960001 RAL-491 1487 chrX 8085573 8085603 chrX 8085659 8085688 11 84 0.5 3.5 2.0 3.7 115 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085688 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-491 1488 chrX 8092291 8092313 chrX 8092376 8092392 4 84 3.5 0.5 2.0 1.3 101 chrX 8092291 intron Ubc-E2H - chrX 8092342 intron Ubc-E2H - chrX 8092392 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-491 1489 chrX 8421471 8421491 chrX 8421550 8421567 5 85 1.5 3.0 2.2 1.6 96 chrX 8421471 intron Trf2 + chrX 8421519 intron Trf2 + chrX 8421567 intron Trf2 + chrX_5_8420001 chrX_8420001 RAL-491 1490 chrX 8509121 8509150 chrX 8509196 8509201 4 70 0.0 2.5 1.2 1.8 80 chrX 8509121 intron CG33181 + chrX 8509161 intron CG33181 + chrX 8509201 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-491 1491 chrX 8552423 8552448 chrX 8552506 8552523 7 82 0.0 3.5 1.8 2.5 100 chrX 8552423 3` UTR Nrg + chrX 8552473 3` UTR Nrg + chrX 8552523 3` UTR Nrg + chrX_7_8550001 chrX_8550001 RAL-491 1492 chrX 8649732 8649758 chrX 8649918 8649945 9 186 2.0 1.0 1.5 3.6 213 chrX 8649732 intron oc - chrX 8649838 intron oc - chrX 8649945 intron oc - chrX_9_8645001 chrX_8645001 RAL-491 1493 chrX 8708691 8708715 chrX 8708874 8708900 9 184 28.0 5.5 16.8 0.5 209 chrX 8708691 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708900 intergenic not near genes chrX_9_8705001 chrX_8705001 RAL-491 1494 chrX 8922337 8922360 chrX 8922759 8922763 jockey 9 419 2.0 1.0 1.5 3.6 426 chrX 8922337 intron rdgA + chrX 8922550 intron rdgA + chrX 8922763 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-491 1495 chrX 8927585 8927617 chrX 8929855 8929877 NOF 4 2267 4.0 1.5 2.8 1.1 2292 chrX 8927585 intron rdgA + chrX 8928731 intron rdgA + chrX 8929877 intron rdgA + chrX_4_8925001 chrX_8925001 RAL-491 1496 chrX 8948761 8948788 chrX 8956271 8956298 roo 8 7510 2.0 2.5 2.2 2.5 7537 chrX 8948761 intron rdgA + chrX 8952530 intron rdgA + chrX 8956298 intron rdgA + chrX_8_8950001 chrX_8950001 RAL-491 1497 chrX 9229904 9229940 chrX 9229983 9230018 6 79 2.5 3.5 3.0 1.5 114 chrX 9229904 intron CG12121 - chrX 9229961 intron CG12121 - chrX 9230018 intron CG12121 - chrX_6_9225001 chrX_9225001 RAL-491 1498 chrX 9258073 9258104 chrX 9258216 9258247 5 142 1.0 2.0 1.5 2.0 174 chrX 9258073 exon ric8a + chrX 9258160 3` UTR ric8a + chrX 9258247 3` UTR ric8a + chrX_5_9255001 chrX_9255001 RAL-491 1499 chrX 9337952 9337964 chrX 9338033 9338056 5 82 3.5 1.5 2.5 1.4 104 chrX 9337952 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338056 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-491 1500 chrX 9508145 9508169 chrX 9509661 9509670 jockey 9 1515 1.5 0.5 1.0 4.5 1525 chrX 9508145 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509670 intron CG32700 - chrX_9_9505001 chrX_9505001 RAL-491 1501 chrX 9575804 9575824 chrX 9576116 9576143 mdg3 12 317 3.5 3.5 3.5 2.7 339 chrX 9575804 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_12_9575001 chrX_9575001 RAL-491 1502 chrX 10070954 10070987 chrX 10071111 10071143 7 154 1.5 0.5 1.0 3.5 189 chrX 10070954 intergenic CG15312 -,CR45602 + chrX 10071048 intergenic CG15312 -,CR45602 + chrX 10071143 intergenic CR45602 +,CG15312 - chrX_7_10070001 chrX_10070001 RAL-491 1503 chrX 10138216 10138247 chrX 10145720 10145749 412 9 7503 2.0 2.0 2.0 3.0 7533 chrX 10138216 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145749 intron,intron RhoU +,CR44894 - chrX_9_10140001 chrX_10140001 RAL-491 1504 chrX 10401402 10401423 chrX 10401483 10401502 5 80 2.0 2.5 2.2 1.6 100 chrX 10401402 intron flw + chrX 10401452 intron flw + chrX 10401502 intron flw + chrX_5_10400001 chrX_10400001 RAL-491 1505 chrX 10431344 10431364 chrX 10431418 10431444 4 78 1.0 3.5 2.2 1.2 100 chrX 10431344 intron CG32683 - chrX 10431394 intron CG32683 - chrX 10431444 intron CG32683 - chrX_4_10430001 chrX_10430001 RAL-491 1506 chrX 10446691 10446716 chrX 10446771 10446784 4 78 2.0 2.0 2.0 1.3 93 chrX 10446691 intron CG32683 - chrX 10446738 intron CG32683 - chrX 10446784 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-491 1507 chrX 10453077 10453089 chrX 10453263 10453266 6 188 1.5 1.0 1.2 2.7 189 chrX 10453077 intron CG32683 - chrX 10453172 intron CG32683 - chrX 10453266 intron CG32683 - chrX_6_10450001 chrX_10450001 RAL-491 1508 chrX 10550335 10550367 chrX 10550413 10550445 11 78 3.0 3.5 3.2 2.6 110 chrX 10550335 intron spri - chrX 10550390 intron spri - chrX 10550445 intron spri - chrX_11_10550001 chrX_10550001 RAL-491 1509 chrX 10550872 10550887 chrX 10552317 10552354 hobo 6 1456 1.5 1.0 1.2 2.7 1482 chrX 10550872 intron spri - chrX 10551613 intron spri - chrX 10552354 intron spri - chrX_6_10550001 chrX_10550001 RAL-491 1510 chrX 10686058 10686082 chrX 10691185 10691219 roo 7 5133 2.5 0.5 1.5 2.8 5161 chrX 10686058 intron X11Lbeta + chrX 10688638 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-491 1511 chrX 10803037 10803048 chrX 10803119 10803130 5 83 4.5 3.0 3.8 1.0 93 chrX 10803037 intron Imp - chrX 10803084 intron Imp - chrX 10803130 intron Imp - chrX_5_10800001 chrX_10800001 RAL-491 1512 chrX 11096005 11096030 chrX 11103107 11103132 HMS-Beagle 5 7102 3.0 2.0 2.5 1.4 7127 chrX 11096005 intergenic not near genes chrX 11099568 intergenic not near genes chrX 11103132 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-491 1513 chrX 11167780 11167804 chrX 11167871 11167901 6 91 2.5 1.5 2.0 2.0 121 chrX 11167780 intergenic antdh - chrX 11167840 intergenic antdh - chrX 11167901 intergenic antdh - chrX_6_11165001 chrX_11165001 RAL-491 1514 chrX 11205297 11205318 chrX 11205373 11205393 7 75 1.0 2.5 1.8 2.5 96 chrX 11205297 intergenic not near genes chrX 11205345 intergenic not near genes chrX 11205393 intergenic not near genes chrX_7_11205001 chrX_11205001 RAL-491 1515 chrX 11254170 11254199 chrX 11254281 11254310 6 109 2.5 3.5 3.0 1.5 140 chrX 11254170 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254310 intron CG44422 - chrX_6_11250001 chrX_11250001 RAL-491 1516 chrX 11312069 11312095 chrX 11319422 11319436 Stalker2 5 7348 2.0 1.0 1.5 2.0 7367 chrX 11312069 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319436 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-491 1517 chrX 11633415 11633449 chrX 11640469 11640503 297 10 7051 1.5 0.5 1.0 5.0 7088 chrX 11633415 intron Ptp10D + chrX 11636959 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_10_11635001 chrX_11635001 RAL-491 1518 chrX 11804674 11804689 chrX 11804778 11804793 5 103 1.0 2.5 1.8 1.8 119 chrX 11804674 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804793 intron Hsc70-3 - chrX_5_11800001 chrX_11800001 RAL-491 1519 chrX 12019451 12019469 chrX 12019512 12019546 7 74 4.0 3.5 3.8 1.5 95 chrX 12019451 intron CG15735 + chrX 12019498 intron CG15735 + chrX 12019546 intron CG15735 + chrX_7_12015001 chrX_12015001 RAL-491 1520 chrX 12038094 12038118 chrX 12038281 12038294 8 190 6.0 3.0 4.5 1.5 200 chrX 12038094 intergenic not near genes chrX 12038194 intergenic not near genes chrX 12038294 intergenic not near genes chrX_8_12035001 chrX_12035001 RAL-491 1521 chrX 12041193 12041204 chrX 12041612 12041613 4 413 3.5 3.5 3.5 0.9 420 chrX 12041193 intergenic not near genes chrX 12041403 intergenic not near genes chrX 12041613 intergenic not near genes chrX_4_12040001 chrX_12040001 RAL-491 1522 chrX 12301964 12301971 chrX 12303269 12303277 X-element 4 1304 1.5 6.0 3.8 0.8 1313 chrX 12301964 intron Ten-a + chrX 12302620 intron Ten-a + chrX 12303277 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-491 1523 chrX 12301973 12301988 chrX 12303268 12303294 X-element 4 1300 0.5 6.0 3.2 1.0 1321 chrX 12301973 intron Ten-a + chrX 12302634 intron Ten-a + chrX 12303294 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-491 1524 chrX 12430953 12430962 chrX 12431031 12431040 4 77 1.5 1.5 1.5 1.6 87 chrX 12430953 intergenic not near genes chrX 12430996 intergenic not near genes chrX 12431040 intergenic not near genes chrX_4_12430001 chrX_12430001 RAL-491 1525 chrX 855353 855361 chrX 12649915 12649915 4 11794557 0.5 4.5 2.5 1.1 11794562 chrX 855353 intron CG43867 - chrX 6752634 intron CG14439 + chrX 12649915 intron Tomosyn + chrX_4_6750001 chrX_6750001 RAL-491 1526 chrX 12785425 12785455 chrX 12785502 12785532 4 77 0.5 1.5 1.0 2.0 107 chrX 12785425 intergenic Pde9 -,CG32647 - chrX 12785478 intergenic Pde9 - chrX 12785532 intergenic Pde9 - chrX_4_12785001 chrX_12785001 RAL-491 1527 chrX 12859082 12859113 chrX 12859162 12859193 7 80 1.0 2.0 1.5 2.8 111 chrX 12859082 intron Pde9 - chrX 12859138 intron Pde9 - chrX 12859193 intron Pde9 - chrX_7_12855001 chrX_12855001 RAL-491 1528 chrX 12919724 12919741 chrX 12919810 12919831 6 87 1.0 2.0 1.5 2.4 107 chrX 12919724 intron fne + chrX 12919778 intron fne + chrX 12919831 intron fne + chrX_6_12915001 chrX_12915001 RAL-491 1529 chrX 13172353 13172381 chrX 13172428 13172451 7 72 2.5 3.0 2.8 1.8 98 chrX 13172353 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172451 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-491 1530 chrX 13228103 13228110 chrX 13228825 13228840 6 724 0.5 12.0 6.2 0.8 737 chrX 13228103 intron mew - chrX 13228472 intron mew - chrX 13228840 intron mew - chrX_6_13225001 chrX_13225001 RAL-491 1531 chrX 13236887 13236901 chrX 13236964 13236986 7 82 0.0 1.0 0.5 4.7 99 chrX 13236887 intron mew - chrX 13236936 intron mew - chrX 13236986 intron mew - chrX_7_13235001 chrX_13235001 RAL-491 1532 chrX 13374843 13374870 chrX 13374917 13374948 5 72 0.0 1.0 0.5 3.3 105 chrX 13374843 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374948 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-491 1533 chrX 13403020 13403042 chrX 13403147 13403169 X-element 8 124 4.0 0.5 2.2 2.5 149 chrX 13403020 intergenic CG12725 - chrX 13403094 intergenic CG12725 - chrX 13403169 intergenic CG12725 - chrX_8_13400001 chrX_13400001 RAL-491 1534 chrX 13506998 13507011 chrX 13507147 13507161 5 148 1.0 4.0 2.5 1.4 163 chrX 13506998 intron Neto + chrX 13507080 intron Neto + chrX 13507161 intron Neto + chrX_5_13505001 chrX_13505001 RAL-491 1535 chrX 13577771 13577777 chrX 13578007 13578013 4 236 4.0 4.0 4.0 0.8 242 chrX 13577771 intron Tango13 + chrX 13577892 intron Tango13 + chrX 13578013 intron Tango13 + chrX_4_13575001 chrX_13575001 RAL-491 1536 chrX 13843391 13843403 chrX 13843544 13843556 4 150 2.5 1.5 2.0 1.3 165 chrX 13843391 intron AMPdeam - chrX 13843474 intron AMPdeam - chrX 13843556 intron AMPdeam - chrX_4_13840001 chrX_13840001 RAL-491 1537 chrX 13875962 13875973 chrX 13876046 13876056 4 84 0.0 0.5 0.2 3.3 94 chrX 13875962 intron mamo - chrX 13876009 intron mamo - chrX 13876056 intron mamo - chrX_4_13875001 chrX_13875001 RAL-491 1538 chrX 13875975 13875981 chrX 13876041 13876065 4 77 0.0 0.5 0.2 3.3 90 chrX 13875975 intron mamo - chrX 13876020 intron mamo - chrX 13876065 intron mamo - chrX_4_13875001 chrX_13875001 RAL-491 1539 chrX 13937976 13938000 chrX 13941246 13941271 I-element 5 3268 0.5 1.5 1.0 2.5 3295 chrX 13937976 intron mamo - chrX 13939624 intron mamo - chrX 13941271 intron mamo - chrX_5_13935001 chrX_13935001 RAL-491 1540 chrX 14105029 14105051 chrX 14114180 14114189 roo 6 9144 4.0 8.5 6.2 0.8 9160 chrX 14105029 intergenic not near genes chrX 14109609 intergenic not near genes chrX 14114189 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-491 1541 chrX 14131498 14131520 chrX 14131578 14131600 5 77 2.0 2.5 2.2 1.6 102 chrX 14131498 intergenic not near genes chrX 14131549 intergenic not near genes chrX 14131600 intergenic not near genes chrX_5_14130001 chrX_14130001 RAL-491 1542 chrX 14157604 14157615 chrX 14163256 14163271 297 5 5656 1.0 1.0 1.0 2.5 5667 chrX 14157604 intergenic not near genes chrX 14160438 intergenic not near genes chrX 14163271 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-491 1543 chrX 14714045 14714065 chrX 14714126 14714142 4 80 1.0 2.5 1.8 1.4 97 chrX 14714045 intron NetB - chrX 14714094 intron NetB - chrX 14714142 intron NetB - chrX_4_14710001 chrX_14710001 RAL-491 1544 chrX 14778027 14778051 chrX 14782824 14782840 Doc 4 4795 3.5 2.0 2.8 1.1 4813 chrX 14778027 intergenic CG5347 + chrX 14780434 intergenic not near genes chrX 14782840 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-491 1545 chrX 14960396 14960416 chrX 14960537 14960556 5 141 1.0 0.0 0.5 3.3 160 chrX 14960396 intron eag + chrX 14960476 intron eag + chrX 14960556 intron eag + chrX_5_14960001 chrX_14960001 RAL-491 1546 chrX 14981730 14981740 chrX 14981809 14981816 4 77 1.0 1.0 1.0 2.0 86 chrX 14981730 intron eag + chrX 14981773 intron eag + chrX 14981816 intron eag + chrX_4_14980001 chrX_14980001 RAL-491 1547 chrX 15228496 15228528 chrX 15228742 15228762 9 245 3.0 2.5 2.8 2.4 266 chrX 15228496 intergenic CG9101 - chrX 15228629 intergenic CG9101 - chrX 15228762 3` UTR CG9101 - chrX_9_15225001 chrX_15225001 RAL-491 1548 chrX 15369848 15369864 chrX 15369931 15369945 4 81 2.0 3.0 2.5 1.1 97 chrX 15369848 intron acj6 - chrX 15369896 intron acj6 - chrX 15369945 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-491 1549 chrX 15413060 15413086 chrX 15417352 15417368 Juan 6 4294 3.0 4.0 3.5 1.3 4308 chrX 15413060 intron Cngl - chrX 15415214 intron Cngl - chrX 15417368 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-491 1550 chrX 15421920 15421952 chrX 15423431 15423457 pogo 4 1505 1.5 1.0 1.2 1.8 1537 chrX 15421920 intron Cngl - chrX 15422688 intron Cngl - chrX 15423457 intron Cngl - chrX_4_15420001 chrX_15420001 RAL-491 1551 chrX 15435687 15435705 chrX 15436109 15436138 rover 6 430 0.0 2.5 1.2 2.7 451 chrX 15435687 intron Cngl - chrX 15435912 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-491 1552 chrX 15519800 15519830 chrX 15519878 15519902 7 73 1.5 2.5 2.0 2.3 102 chrX 15519800 intron Ac13E - chrX 15519851 intron Ac13E - chrX 15519902 intron Ac13E - chrX_7_15515001 chrX_15515001 RAL-491 1553 chrX 15678050 15678068 chrX 15678118 15678145 6 74 2.5 6.5 4.5 1.1 95 chrX 15678050 intergenic CG12708 + chrX 15678098 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-491 1554 chrX 15911203 15911217 chrX 15911379 15911392 5 176 4.0 1.5 2.8 1.3 189 chrX 15911203 intron CG8909 + chrX 15911298 intron CG8909 + chrX 15911392 intron CG8909 + chrX_5_15910001 chrX_15910001 RAL-491 1555 chrX 16295537 16295552 chrX 16295621 16295636 5 82 1.0 0.0 0.5 3.3 99 chrX 16295537 intron CG9911 - chrX 16295586 intron CG9911 - chrX 16295636 intron CG9911 - chrX_5_16295001 chrX_16295001 RAL-491 1556 chrX 16492644 16492674 chrX 16498221 16498245 mdg3 9 5576 4.5 0.5 2.5 2.6 5601 chrX 16492644 intron para - chrX 16495444 intron para - chrX 16498245 intron para - chrX_9_16495001 chrX_16495001 RAL-491 1557 chrX 16529425 16529442 chrX 16529536 16529553 7 109 0.0 3.0 1.5 2.8 128 chrX 16529425 intron para - chrX 16529489 intron para - chrX 16529553 intron para - chrX_7_16525001 chrX_16525001 RAL-491 1558 chrX 16623485 16623505 chrX 16623571 16623582 5 83 4.0 0.5 2.2 1.6 97 chrX 16623485 intergenic not near genes chrX 16623534 intergenic Rok - chrX 16623582 intergenic Rok - chrX_5_16620001 chrX_16620001 RAL-491 1559 chrX 16674761 16674784 chrX 16674874 16674897 8 113 0.5 2.5 1.5 3.2 136 chrX 16674761 intron CG13012 - chrX 16674829 intron CG13012 - chrX 16674897 intron CG13012 - chrX_8_16670001 chrX_16670001 RAL-491 1560 chrX 16725243 16725273 chrX 16725493 16725516 7 245 12.5 16.5 14.5 0.5 273 chrX 16725243 intron CG32572 + chrX 16725380 intron CG32572 + chrX 16725516 intron CG32572 + chrX_7_16725001 chrX_16725001 RAL-491 1561 chrX 16785274 16785308 chrX 16785378 16785412 4 104 0.5 0.0 0.2 3.3 138 chrX 16785274 3` UTR CG9609 - chrX 16785343 3` UTR CG9609 - chrX 16785412 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-491 1562 chrX 17006358 17006376 chrX 17006747 17006765 5 388 2.0 2.0 2.0 1.7 407 chrX 17006358 intron CG45002 - chrX 17006562 intron CG45002 - chrX 17006765 intron CG45002 - chrX_5_17005001 chrX_17005001 RAL-491 1563 chrX 17195204 17195233 chrX 17200289 17200303 flea 4 5079 2.5 0.5 1.5 1.6 5099 chrX 17195204 3` UTR baz + chrX 17197754 3` UTR baz + chrX 17200303 3` UTR baz + chrX_4_17195001 chrX_17195001 RAL-491 1564 chrX 17352593 17352619 chrX 17352694 17352720 11 102 1.0 2.5 1.8 3.9 127 chrX 17352593 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352720 intergenic not near genes chrX_11_17350001 chrX_17350001 RAL-491 1565 chrX 17680889 17680924 chrX 17680965 17680967 9 71 2.0 6.5 4.2 1.7 78 chrX 17680889 intron chas - chrX 17680928 intron chas - chrX 17680967 intron chas - chrX_9_17680001 chrX_17680001 RAL-491 1566 chrX 17911856 17911878 chrX 17911944 17911966 5 88 0.5 0.5 0.5 3.3 110 chrX 17911856 intron CG6847 + chrX 17911911 intron CG6847 + chrX 17911966 intron CG6847 + chrX_5_17910001 chrX_17910001 RAL-491 1567 chrX 17980905 17980920 chrX 17981911 17981922 5 1005 3.0 3.0 3.0 1.2 1017 chrX 17980905 intron Sh - chrX 17981414 intron Sh - chrX 17981922 intron Sh - chrX_5_17980001 chrX_17980001 RAL-491 1568 chrX 18194072 18194098 chrX 18194607 18194625 BS 8 532 2.5 2.5 2.5 2.3 553 chrX 18194072 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194625 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-491 1569 chrX 18429492 18429526 chrX 18434803 18434837 Transpac 8 5310 2.5 3.5 3.0 2.0 5345 chrX 18429492 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434837 intergenic not near genes chrX_8_18430001 chrX_18430001 RAL-491 1570 chrX 18486107 18486142 chrX 18486196 18486231 11 86 2.0 2.5 2.2 3.4 124 chrX 18486107 exon psh - chrX 18486169 intron psh - chrX 18486231 intron psh - chrX_11_18485001 chrX_18485001 RAL-491 1571 chrX 18645031 18645043 chrX 18645129 18645140 6 97 1.0 6.0 3.5 1.3 109 chrX 18645031 intron Rip11 - chrX 18645086 intron Rip11 - chrX 18645140 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-491 1572 chrX 18896527 18896544 chrX 18896638 18896655 6 108 2.5 3.0 2.8 1.6 128 chrX 18896527 3` UTR CG7349 + chrX 18896591 intergenic CG7349 + chrX 18896655 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-491 1573 chrX 19020613 19020623 chrX 19020691 19020692 4 76 0.0 4.5 2.2 1.2 79 chrX 19020613 intron CG43759 + chrX 19020652 intron CG43759 + chrX 19020692 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-491 1574 chrX 19048224 19048255 chrX 19048313 19048344 6 88 2.5 3.0 2.8 1.6 120 chrX 19048224 intergenic not near genes chrX 19048284 intergenic not near genes chrX 19048344 intergenic not near genes chrX_6_19045001 chrX_19045001 RAL-491 1575 chrX 19056067 19056094 chrX 19056170 19056197 5 103 1.0 0.5 0.8 2.8 130 chrX 19056067 intergenic not near genes chrX 19056132 intergenic not near genes chrX 19056197 intergenic not near genes chrX_5_19055001 chrX_19055001 RAL-491 1576 chrX 19060407 19060433 chrX 19065191 19065217 Doc 7 4783 3.5 1.0 2.2 2.2 4810 chrX 19060407 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065217 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-491 1577 chrX 19080339 19080355 chrX 19080431 19080461 4 97 4.0 2.5 3.2 1.0 122 chrX 19080339 intergenic not near genes chrX 19080400 intergenic not near genes chrX 19080461 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-491 1578 chrX 13057299 13057300 chrX 19242813 19242814 7 6185514 4.5 3.5 4.0 1.4 6185515 chrX 13057299 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_7_16150001 chrX_16150001 RAL-491 1579 chrX 19294226 19294242 chrX 19294454 19294488 5 241 4.5 1.5 3.0 1.2 262 chrX 19294226 intron CG8034 - chrX 19294357 intron CG8034 - chrX 19294488 intron CG8034 - chrX_5_19290001 chrX_19290001 RAL-491 1580 chrX 19356986 19357016 chrX 19358427 19358457 NOF 6 1440 3.0 0.0 1.5 2.4 1471 chrX 19356986 intron kek5 + chrX 19357722 intron kek5 + chrX 19358457 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-491 1581 chrX 19380159 19380182 chrX 19380398 19380423 pogo 4 240 3.0 1.5 2.2 1.2 264 chrX 19380159 intron kek5 + chrX 19380291 intron kek5 + chrX 19380423 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-491 1582 chrX 19472147 19472161 chrX 19472690 19472718 jockey 5 551 4.0 1.5 2.8 1.3 571 chrX 19472147 intergenic kek5 + chrX 19472432 intergenic not near genes chrX 19472718 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-491 1583 chrX 19500723 19500751 chrX 19500810 19500838 7 87 0.0 4.0 2.0 2.3 115 chrX 19500723 intron,intron CG14200 +,Pfrx + chrX 19500780 intron,intron CG14200 +,Pfrx + chrX 19500838 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-491 1584 chrX 19593949 19593971 chrX 19594034 19594043 11 83 3.0 4.0 3.5 2.4 94 chrX 19593949 exon CG14205 + chrX 19593996 intron CG14205 + chrX 19594043 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-491 1585 chrX 19710074 19710095 chrX 19711860 19711881 S-element 8 1784 4.5 5.0 4.8 1.4 1807 chrX 19710074 intron meso18E - chrX 19710978 intron meso18E - chrX 19711881 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-491 1586 chrX 20041536 20041565 chrX 20041616 20041645 9 78 3.5 2.5 3.0 2.2 109 chrX 20041536 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041645 intron Dop2R - chrX_9_20040001 chrX_20040001 RAL-491 1587 chrX 20279759 20279777 chrX 20279840 20279858 4 81 1.0 2.0 1.5 1.6 99 chrX 20279759 intergenic not near genes chrX 20279808 intergenic not near genes chrX 20279858 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-491 1588 chrX 20312889 20312909 chrX 20312963 20312987 7 76 1.5 1.5 1.5 2.8 98 chrX 20312889 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312987 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-491 1589 chrX 20377330 20377348 chrX 20378782 20378815 hobo 9 1461 4.5 3.0 3.8 1.9 1485 chrX 20377330 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378815 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-491 1590 chrX 20443170 20443205 chrX 20443246 20443281 4 76 2.5 1.0 1.8 1.4 111 chrX 20443170 exon CG1695 + chrX 20443226 intron CG1695 + chrX 20443281 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-491 1591 chrX 20468022 20468041 chrX 20468101 20468124 5 82 0.5 0.0 0.2 4.2 102 chrX 20468022 intron GstT3 + chrX 20468073 intron GstT3 + chrX 20468124 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-491 1592 chrX 20578076 20578102 chrX 20578155 20578181 5 77 2.5 1.0 1.8 1.8 105 chrX 20578076 intergenic not near genes chrX 20578128 intergenic not near genes chrX 20578181 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-491 1593 chrX 20583725 20583743 chrX 20583896 20583908 5 168 3.0 0.5 1.8 1.8 183 chrX 20583725 intergenic not near genes chrX 20583816 intergenic not near genes chrX 20583908 intergenic not near genes chrX_5_20580001 chrX_20580001 RAL-491 1594 chrX 20662316 20662333 chrX 20662399 20662400 8 81 2.5 0.0 1.2 3.6 84 chrX 20662316 intron CG1835 + chrX 20662358 intron CG1835 + chrX 20662400 intron CG1835 + chrX_8_20660001 chrX_20660001 RAL-491 1595 chrX 20710414 20710437 chrX 20710491 20710513 6 76 0.0 2.5 1.2 2.7 99 chrX 20710414 intergenic not near genes chrX 20710464 intergenic not near genes chrX 20710513 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-491 1596 chrX 20780226 20780239 chrX 20780451 20780464 5 225 4.5 3.0 3.8 1.0 238 chrX 20780226 intron,3` UTR shakB -,CG32507 - chrX 20780345 intron,3` UTR shakB -,CG32507 - chrX 20780464 intron,3` UTR shakB -,CG32507 - chrX_5_20780001 chrX_20780001 RAL-491 1597 chrX 20791562 20791573 chrX 20791662 20791673 4 100 1.0 0.0 0.5 2.7 111 chrX 20791562 intron shakB - chrX 20791618 intron shakB - chrX 20791673 intron shakB - chrX_4_20790001 chrX_20790001 RAL-491 1598 chrX 20940734 20940754 chrX 20942190 20942204 hobo 9 1463 1.0 2.5 1.8 3.2 1470 chrX 20940734 intergenic not near genes chrX 20941469 intergenic not near genes chrX 20942204 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-491 1599 chrX 21029161 21029182 chrX 21029371 21029399 4 213 0.0 3.0 1.5 1.6 238 chrX 21029161 3` UTR CG1529 - chrX 21029280 3` UTR CG1529 - chrX 21029399 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-491 1600 chrX 21086129 21086164 chrX 21087158 21087193 jockey 12 1026 3.5 2.5 3.0 3.0 1064 chrX 21086129 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087193 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-491 1601 chrX 21419705 21419734 chrX 21419793 21419822 6 87 1.0 3.5 2.2 1.9 117 chrX 21419705 intergenic not near genes chrX 21419764 intergenic not near genes chrX 21419822 intergenic not near genes chrX_6_21415001 chrX_21415001 RAL-491 1602 chrX 21458719 21458729 chrX 21464130 21464158 Ivk 4 5419 0.5 4.0 2.2 1.2 5439 chrX 21458719 intergenic not near genes chrX 21461438 intergenic not near genes chrX 21464158 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-491 1603 chrX 21500568 21500588 chrX 21500768 21500789 4 200 0.0 1.5 0.8 2.2 221 chrX 21500568 intron CR45082 - chrX 21500678 intron CR45082 - chrX 21500789 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-491 1604 chrX 21575542 21575554 chrX 21575621 21575627 4 76 0.5 2.0 1.2 1.8 85 chrX 21575542 intergenic not near genes chrX 21575584 intergenic not near genes chrX 21575627 intergenic not near genes chrX_4_21575001 chrX_21575001 RAL-491 1605 chrX 21668258 21668285 chrX 21668343 21668363 5 81 2.5 0.5 1.5 2.0 105 chrX 21668258 intergenic not near genes chrX 21668310 intergenic not near genes chrX 21668363 intergenic not near genes chrX_5_21665001 chrX_21665001 RAL-491 1606 chrX 22522627 22522657 chrX 22525447 22525473 NOF 7 2819 0.0 4.0 2.0 2.3 2846 chrX 22522627 intron CG17600 + chrX 22524050 intron CG17600 + chrX 22525473 intron CG17600 + chrX_7_22520001 chrX_22520001 RAL-491 1607 chrX 22564560 22564578 chrX 22575132 22575150 jockey 4 10572 7.0 4.5 5.8 0.6 10590 chrX 22564560 intergenic not near genes chrX 22569855 intergenic not near genes chrX 22575150 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-491 1608 chrX 22824229 22824443 chrX 22824355 22824576 8 126 1.0 2.0 1.5 3.2 347 chrX 22824229 intergenic fog - chrX 22824402 3` UTR fog - chrX 22824576 3` UTR fog - chrX_8_22820001 chrX_22820001 RAL-491 1609 chrX 22870883 22870896 chrX 22870959 22870987 4 87 2.0 4.5 3.2 1.0 104 chrX 22870883 intron,3` UTR CG42346 +,CR43656 - chrX 22870935 intron,3` UTR CG42346 +,CR43656 - chrX 22870987 intron,3` UTR CG42346 +,CR43656 - chrX_4_22870001 chrX_22870001 RAL-491 1610 chrX 22992394 22992426 chrX 22992525 22992544 10 128 2.0 0.0 1.0 5.0 150 chrX 22992394 intron,intron stnA -,stnB - chrX 22992469 intron,intron stnA -,stnB - chrX 22992544 intron,intron stnA -,stnB - chrX_10_22990001 chrX_22990001 RAL-491 1611 chrX 22996318 22996339 chrX 23003550 23003571 roo 6 7232 3.0 2.0 2.5 1.7 7253 chrX 22996318 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-491 1612 chrX 23036391 23036399 chrX 23037792 23037799 pogo 4 1400 2.5 0.5 1.5 1.6 1408 chrX 23036391 intron CG12061 + chrX 23037095 intron CG12061 + chrX 23037799 intron CG12061 + chrX_4_23035001 chrX_23035001 RAL-491 1613 chrY 975599 975811 chrY 975716 975873 6 108 93.5 95.5 94.5 0.1 274 chrY 975599 intergenic not near genes chrY 975736 intergenic not near genes chrY 975873 intergenic not near genes chrY_6_975001 chrY_975001 RAL-491