SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47444	47466	chr2L	52569	52578	jockey	8	5121	8.5	10.0	9.2	0.8	5134	chr2L	47444	intron	Cda5 -	chr2L	50011	intron	Cda5 -	chr2L	52578	intron	Cda5 -	chr2L_8_50001	chr2L_50001	RAL-461
2	chr2L	47470	47471	chr2L	52568	52596	jockey	4	5117	7.5	10.0	8.8	0.4	5126	chr2L	47470	intron	Cda5 -	chr2L	50033	intron	Cda5 -	chr2L	52596	intron	Cda5 -	chr2L_4_50001	chr2L_50001	RAL-461
3	chr2L	47477	47487	chr2L	52562	52612	jockey	5	5114	5.5	9.5	7.5	0.6	5135	chr2L	47477	intron	Cda5 -	chr2L	50044	intron	Cda5 -	chr2L	52612	intron	Cda5 -	chr2L_5_50001	chr2L_50001	RAL-461
10	chr2L	347881	347919	chr2L	355395	355419	blood	13	7514	4.0	7.0	5.5	2.0	7538	chr2L	347881	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355419	3` UTR	Plc21C +	chr2L_13_350001	chr2L_350001	RAL-461
16	chr2L	686928	686947	chr2L	695972	696002	roo	6	9055	1.5	3.0	2.2	1.9	9074	chr2L	686928	intron	ds -	chr2L	691465	intron	ds -	chr2L	696002	intron	ds -	chr2L_6_690001	chr2L_690001	RAL-461
17	chr2L	770445	770492	chr2L	772245	772245	Bari1	11	1787	2.5	0.5	1.5	4.4	1800	chr2L	770445	intergenic	not near genes	chr2L	771345	intergenic	not near genes	chr2L	772245	intergenic	CR44614 +	chr2L_11_770001	chr2L_770001	RAL-461
20	chr2L	976858	976891	chr2L	984514	984547	roo	8	7654	9.0	0.5	4.8	1.4	7689	chr2L	976858	intergenic	not near genes	chr2L	980702	intergenic	not near genes	chr2L	984547	intergenic	not near genes	chr2L_8_980001	chr2L_980001	RAL-461
21	chr2L	996710	996741	chr2L	1005825	1005846	roo	4	9112	6.0	4.0	5.0	0.7	9136	chr2L	996710	intergenic	not near genes	chr2L	1001278	intergenic	not near genes	chr2L	1005846	intergenic	not near genes	chr2L_4_1000001	chr2L_1000001	RAL-461
30	chr2L	1220122	1220137	chr2L	1227608	1227623	blood	8	7484	8.5	4.5	6.5	1.1	7501	chr2L	1220122	intron	CG42329 +	chr2L	1223872	intron	CG42329 +	chr2L	1227623	intron	CG42329 +	chr2L_8_1220001	chr2L_1220001	RAL-461
31	chr2L	1220142	1220147	chr2L	1227598	1227625	blood	5	7472	7.5	3.0	5.2	0.8	7483	chr2L	1220142	intron	CG42329 +	chr2L	1223884	intron	CG42329 +	chr2L	1227625	intron	CG42329 +	chr2L_5_1220001	chr2L_1220001	RAL-461
33	chr2L	1301749	1301783	chr2L	1302306	1302337	gypsy	8	556	0.0	10.5	5.2	1.3	588	chr2L	1301749	intergenic	not near genes	chr2L	1302043	intergenic	not near genes	chr2L	1302337	intergenic	not near genes	chr2L_8_1300001	chr2L_1300001	RAL-461
41	chr2L	1570673	1570708	chr2L	1573565	1573590	F-element	8	2890	5.5	1.5	3.5	1.8	2917	chr2L	1570673	intron	haf +	chr2L	1572132	intron	haf +	chr2L	1573590	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-461
46	chr2L	1678944	1679007	chr2L	1686447	1686476	blood	7	7489	0.5	8.5	4.5	1.3	7532	chr2L	1678944	intron	chinmo +	chr2L	1682710	intron	chinmo +	chr2L	1686476	intron	chinmo +	chr2L_7_1680001	chr2L_1680001	RAL-461
47	chr2L	1711338	1711383	chr2L	1711682	1711727	mdg3	8	332	2.5	2.0	2.2	2.5	389	chr2L	1711338	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711727	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-461
57	chr2L	2100381	2100406	chr2L	2109525	2109551	roo	9	9155	4.5	5.5	5.0	1.5	9170	chr2L	2100381	intron	dpr3 -	chr2L	2104966	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-461
65	chr2L	2565530	2565559	chr2L	2571614	2571646	297	5	6085	3.0	3.5	3.2	1.2	6116	chr2L	2565530	exon	Cyp309a2 -	chr2L	2568588	intron	Cyp309a2 -	chr2L	2571646	intron	Cyp309a2 -	chr2L_5_2565001	chr2L_2565001	RAL-461
69	chr2L	2772599	2772625	chr2L	2779203	2779229	297	4	6604	2.0	5.5	3.8	0.8	6630	chr2L	2772599	3` UTR	Syt1 -	chr2L	2775914	intron	Syt1 -	chr2L	2779229	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	RAL-461
71	chr2L	2933321	2933331	chr2L	2935480	2935528	pogo	4	2188	1.5	2.0	1.8	1.4	2207	chr2L	2933321	intron	lilli +	chr2L	2934424	intron	lilli +	chr2L	2935528	intron	lilli +	chr2L_4_2930001	chr2L_2930001	RAL-461
72	chr2L	3073013	3073017	chr2L	3078236	3078240	copia	4	5223	13.5	2.5	8.0	0.4	5227	chr2L	3073013	intron	toc -	chr2L	3075626	intron	toc -	chr2L	3078240	intron	toc -	chr2L_4_3075001	chr2L_3075001	RAL-461
73	chr2L	3073033	3073053	chr2L	3078233	3078250	copia	8	5213	7.5	2.5	5.0	1.3	5217	chr2L	3073033	intron	toc -	chr2L	3075642	intron	toc -	chr2L	3078250	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-461
76	chr2L	3202721	3202772	chr2L	3210170	3210221	mdg1	16	7445	5.0	9.0	7.0	2.0	7500	chr2L	3202721	intergenic	not near genes	chr2L	3206471	intergenic	not near genes	chr2L	3210221	intergenic	CR45336 +	chr2L_16_3205001	chr2L_3205001	RAL-461
77	chr2L	3251488	3251497	chr2L	3259061	3259082	springer	6	7582	5.5	3.0	4.2	1.2	7594	chr2L	3251488	intergenic	not near genes	chr2L	3255285	intergenic	not near genes	chr2L	3259082	intergenic	not near genes	chr2L_6_3255001	chr2L_3255001	RAL-461
78	chr2L	3251505	3251522	chr2L	3259059	3259107	springer	7	7580	2.5	3.0	2.8	1.8	7602	chr2L	3251505	intergenic	not near genes	chr2L	3255306	intergenic	not near genes	chr2L	3259107	intergenic	not near genes	chr2L_7_3255001	chr2L_3255001	RAL-461
80	chr2L	3388583	3388630	chr2L	3388844	3388891	pogo	12	257	1.0	3.0	2.0	4.0	308	chr2L	3388583	intergenic	CG42460 -	chr2L	3388737	intergenic	CG42460 -	chr2L	3388891	intergenic	CG42460 -,CR44791 +	chr2L_12_3385001	chr2L_3385001	RAL-461
103	chr2L	4066036	4066060	chr2L	4068871	4068879	Juan	6	2834	3.0	1.5	2.2	1.9	2843	chr2L	4066036	intron	ed +	chr2L	4067458	intron	ed +	chr2L	4068879	intron	ed +	chr2L_6_4065001	chr2L_4065001	RAL-461
105	chr2L	4181296	4181305	chr2L	4183940	4183951	Burdock	4	2648	4.5	1.0	2.8	1.1	2655	chr2L	4181296	intergenic	not near genes	chr2L	4182624	intergenic	not near genes	chr2L	4183951	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-461
109	chr2L	4601682	4601731	chr2L	4609143	4609180	mdg1	11	7453	3.0	3.5	3.2	2.6	7498	chr2L	4601682	intron	dp -	chr2L	4605431	intron	dp -	chr2L	4609180	intron	dp -	chr2L_11_4605001	chr2L_4605001	RAL-461
110	chr2L	4661827	4661858	chr2L	4669427	4669448	opus	7	7597	2.0	5.5	3.8	1.5	7621	chr2L	4661827	intergenic	not near genes	chr2L	4665638	intergenic	not near genes	chr2L	4669448	intergenic	not near genes	chr2L_7_4665001	chr2L_4665001	RAL-461
115	chr2L	4918153	4918191	chr2L	4923246	4923322	jockey	4	5100	6.0	1.0	3.5	0.9	5169	chr2L	4918153	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923322	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-461
118	chr2L	4953504	4953540	chr2L	4953757	4953796	pogo	6	259	2.0	5.0	3.5	1.3	292	chr2L	4953504	intergenic	Jon25Bii -	chr2L	4953650	intergenic	not near genes	chr2L	4953796	intergenic	Jon25Bi -	chr2L_6_4950001	chr2L_4950001	RAL-461
126	chr2L	5342759	5342791	chr2L	5345159	5345191	Doc	12	2398	2.5	4.0	3.2	2.9	2432	chr2L	5342759	intergenic	not near genes	chr2L	5343975	intergenic	not near genes	chr2L	5345191	intergenic	not near genes	chr2L_12_5340001	chr2L_5340001	RAL-461
142	chr2L	5827702	5827740	chr2L	5836724	5836746	roo	8	9020	4.5	5.5	5.0	1.3	9044	chr2L	5827702	intron	TrissinR +	chr2L	5832224	intron	TrissinR +	chr2L	5836746	intron	TrissinR +	chr2L_8_5830001	chr2L_5830001	RAL-461
160	chr2L	6426851	6426884	chr2L	6445131	6445164	roo	7	18280	7.5	6.0	6.8	0.9	18313	chr2L	6426851	3` UTR	CG9527 -	chr2L	6436008	intron	CG9527 -	chr2L	6445164	exon	CG9527 -	chr2L_7_6435001	chr2L_6435001	RAL-461
184	chr2L	7579197	7579215	chr2L	7579408	7579426	BS	5	211	7.5	0.5	4.0	1.0	229	chr2L	7579197	intergenic	RapGAP1 -	chr2L	7579312	intergenic	RapGAP1 -	chr2L	7579426	intergenic	RapGAP1 -	chr2L_5_7575001	chr2L_7575001	RAL-461
199	chr2L	8452409	8452434	chr2L	8461600	8461619	roo	6	9188	6.5	7.0	6.8	0.8	9210	chr2L	8452409	intron	fu12 -	chr2L	8457014	intron	fu12 -	chr2L	8461619	intron	fu12 -	chr2L_6_8455001	chr2L_8455001	RAL-461
200	chr2L	8452435	8452450	chr2L	8461598	8461626	roo	7	9180	4.0	6.5	5.2	1.1	9191	chr2L	8452435	intron	fu12 -	chr2L	8457030	intron	fu12 -	chr2L	8461626	intron	fu12 -	chr2L_7_8455001	chr2L_8455001	RAL-461
204	chr2L	8594461	8594494	chr2L	8601524	8601563	297	6	7071	1.5	1.5	1.5	2.4	7102	chr2L	8594461	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598012	intron	Sema-1a +	chr2L	8601563	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-461
205	chr2L	8723095	8723132	chr2L	8731492	8731529	Tirant	10	8395	3.5	2.5	3.0	2.5	8434	chr2L	8723095	intron	raw -	chr2L	8727312	intron	raw -	chr2L	8731529	intron	raw -	chr2L_10_8725001	chr2L_8725001	RAL-461
211	chr2L	9000262	9000305	chr2L	9007791	9007808	roo	13	7525	1.0	3.0	2.0	4.3	7546	chr2L	9000262	intergenic	Try29F +	chr2L	9004035	intergenic	not near genes	chr2L	9007808	intergenic	not near genes	chr2L_13_9000001	chr2L_9000001	RAL-461
225	chr2L	9393481	9393515	chr2L	9396468	9396502	jockey	10	2984	2.5	5.0	3.8	2.1	3021	chr2L	9393481	intron	Shawl -	chr2L	9394992	intron	Shawl -	chr2L	9396502	intron	Shawl -	chr2L_10_9390001	chr2L_9390001	RAL-461
236	chr2L	9973738	9973746	chr2L	9980851	9980856	HMS-Beagle	5	7121	5.5	2.0	3.8	1.0	7118	chr2L	9973738	intergenic	not near genes	chr2L	9977297	intergenic	not near genes	chr2L	9980856	intergenic	not near genes	chr2L_5_9975001	chr2L_9975001	RAL-461
253	chr2L	10592825	10592870	chr2L	10600507	10600552	opus	11	7680	1.0	5.0	3.0	2.8	7727	chr2L	10592825	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600552	intron	Trim9 +	chr2L_11_10595001	chr2L_10595001	RAL-461
265	chr2L	10946938	10946970	chr2L	10956163	10956176	roo	6	9226	1.5	4.5	3.0	1.5	9238	chr2L	10946938	intron	dpr2 -	chr2L	10951557	intron	dpr2 -	chr2L	10956176	intron	dpr2 -	chr2L_6_10950001	chr2L_10950001	RAL-461
274	chr2L	11540598	11540616	chr2L	11547985	11548038	Tabor	7	7412	7.0	5.5	6.2	1.0	7440	chr2L	11540598	intergenic	not near genes	chr2L	11544318	intergenic	not near genes	chr2L	11548038	intergenic	not near genes	chr2L_7_11540001	chr2L_11540001	RAL-461
275	chr2L	11563636	11563669	chr2L	11568841	11568893	copia	11	5209	2.5	2.0	2.2	3.4	5257	chr2L	11563636	intergenic	not near genes	chr2L	11566264	intergenic	not near genes	chr2L	11568893	intergenic	not near genes	chr2L_11_11565001	chr2L_11565001	RAL-461
279	chr2L	11713497	11713534	chr2L	11720975	11721022	blood	7	7481	3.0	5.5	4.2	1.3	7525	chr2L	11713497	intergenic	not near genes	chr2L	11717260	intergenic	not near genes	chr2L	11721022	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-461
285	chr2L	12067315	12067354	chr2L	12074385	12074426	297	14	7069	3.5	4.5	4.0	2.8	7111	chr2L	12067315	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074426	intergenic	not near genes	chr2L_14_12070001	chr2L_12070001	RAL-461
300	chr2L	12558299	12558346	chr2L	12565448	12565484	HMS-Beagle	8	7139	2.5	2.0	2.2	2.5	7185	chr2L	12558299	intergenic	not near genes	chr2L	12561892	intergenic	not near genes	chr2L	12565484	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	RAL-461
305	chr2L	12728901	12728943	chr2L	12729164	12729206	pogo	8	260	3.5	2.5	3.0	2.0	305	chr2L	12728901	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729206	exon	MRP +	chr2L_8_12725001	chr2L_12725001	RAL-461
306	chr2L	12731044	12731086	chr2L	12735825	12735866	F-element	8	4781	5.5	3.0	4.2	1.5	4822	chr2L	12731044	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735866	intron	MRP +	chr2L_8_12730001	chr2L_12730001	RAL-461
307	chr2L	12739156	12739203	chr2L	12743957	12743976	Doc	8	4796	1.0	4.0	2.5	2.3	4820	chr2L	12739156	exon	MRP +	chr2L	12741566	intron	MRP +	chr2L	12743976	intron	MRP +	chr2L_8_12740001	chr2L_12740001	RAL-461
309	chr2L	12781780	12781810	chr2L	12789250	12789259	Quasimodo	8	7467	6.0	5.5	5.8	1.2	7479	chr2L	12781780	intergenic	not near genes	chr2L	12785520	intergenic	not near genes	chr2L	12789259	intergenic	not near genes	chr2L_8_12785001	chr2L_12785001	RAL-461
310	chr2L	12791592	12791630	chr2L	12795287	12795325	F-element	16	3690	5.0	7.5	6.2	2.2	3733	chr2L	12791592	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795325	intergenic	not near genes	chr2L_16_12790001	chr2L_12790001	RAL-461
313	chr2L	12861691	12861720	chr2L	12863168	12863182	hobo	5	1476	1.0	3.0	2.0	1.7	1491	chr2L	12861691	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	RAL-461
315	chr2L	12933833	12933881	chr2L	12941320	12941368	blood	12	7484	4.0	3.5	3.8	2.5	7535	chr2L	12933833	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941368	intergenic	not near genes	chr2L_12_12935001	chr2L_12935001	RAL-461
324	chr2L	13405633	13405673	chr2L	13410450	13410490	Doc	14	4816	2.0	6.5	4.2	2.7	4857	chr2L	13405633	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410490	intron	CG7110 +	chr2L_14_13405001	chr2L_13405001	RAL-461
325	chr2L	13449442	13449496	chr2L	13456898	13456937	Quasimodo	12	7453	3.0	5.5	4.2	2.3	7495	chr2L	13449442	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453190	intron	CG42784 +	chr2L	13456937	intron	CG42784 +	chr2L_12_13450001	chr2L_13450001	RAL-461
326	chr2L	13481454	13481469	chr2L	13482065	13482096	jockey	5	621	1.0	6.0	3.5	1.1	642	chr2L	13481454	intron	CG42784 +	chr2L	13481775	intron	CG42784 +	chr2L	13482096	intron	CG42784 +	chr2L_5_13480001	chr2L_13480001	RAL-461
327	chr2L	13522124	13522155	chr2L	13527652	13527693	Transpac	5	5536	8.5	4.0	6.2	0.7	5569	chr2L	13522124	intron	B4 -	chr2L	13524908	intron	B4 -	chr2L	13527693	intron	B4 -	chr2L_5_13520001	chr2L_13520001	RAL-461
339	chr2L	13761790	13761830	chr2L	13762914	13762950	Doc	7	1124	7.5	3.5	5.5	1.1	1160	chr2L	13761790	intron	TM9SF4 +	chr2L	13762370	intron	TM9SF4 +	chr2L	13762950	intron	TM9SF4 +	chr2L_7_13760001	chr2L_13760001	RAL-461
340	chr2L	13853087	13853115	chr2L	13862235	13862258	roo	9	9163	4.5	0.0	2.2	2.8	9171	chr2L	13853087	intron	CenG1A +	chr2L	13857672	intron	CenG1A +	chr2L	13862258	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-461
355	chr2L	14642553	14642601	chr2L	14651736	14651783	roo	7	9181	2.5	4.0	3.2	1.7	9230	chr2L	14642553	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651783	intron	osp -	chr2L_7_14645001	chr2L_14645001	RAL-461
359	chr2L	14803859	14803912	chr2L	14809082	14809135	copia	11	5215	1.5	5.5	3.5	2.4	5276	chr2L	14803859	intergenic	not near genes	chr2L	14806497	intergenic	not near genes	chr2L	14809135	intergenic	not near genes	chr2L_11_14805001	chr2L_14805001	RAL-461
362	chr2L	14889953	14889975	chr2L	14890386	14890415	jockey	5	438	4.5	2.5	3.5	1.1	462	chr2L	14889953	intergenic	not near genes	chr2L	14890184	intergenic	not near genes	chr2L	14890415	intergenic	not near genes	chr2L_5_14890001	chr2L_14890001	RAL-461
365	chr2L	14984368	14984405	chr2L	14991989	14992027	opus	5	7619	5.5	4.0	4.8	0.9	7659	chr2L	14984368	intron	mol -	chr2L	14988198	intron	mol -	chr2L	14992027	intron	mol -	chr2L_5_14985001	chr2L_14985001	RAL-461
378	chr2L	15446038	15446076	chr2L	15453519	15453565	blood	5	7483	2.5	2.5	2.5	1.4	7527	chr2L	15446038	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453565	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-461
382	chr2L	15586390	15586440	chr2L	15593462	15593510	297	9	7072	3.5	3.0	3.2	2.1	7120	chr2L	15586390	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593510	intergenic	not near genes	chr2L_9_15585001	chr2L_15585001	RAL-461
387	chr2L	15826874	15826891	chr2L	15829288	15829305	Tabor	6	2412	3.0	13.0	8.0	0.7	2431	chr2L	15826874	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829305	intergenic	not near genes	chr2L_6_15825001	chr2L_15825001	RAL-461
390	chr2L	15956016	15956048	chr2L	15957491	15957535	hobo	14	1484	5.5	4.0	4.8	2.4	1519	chr2L	15956016	intron	beat-Ib -	chr2L	15956776	intron	beat-Ib -	chr2L	15957535	intron	beat-Ib -	chr2L_14_15955001	chr2L_15955001	RAL-461
397	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	11	145889	15.5	23.0	19.2	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	RAL-461
399	chr2L	16141148	16141158	chr2L	16146375	16146385	copia	7	5227	4.5	3.0	3.8	1.5	5237	chr2L	16141148	intergenic	not near genes	chr2L	16143766	intergenic	not near genes	chr2L	16146385	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-461
400	chr2L	16141165	16141187	chr2L	16146371	16146414	copia	5	5223	1.0	3.0	2.0	1.7	5249	chr2L	16141165	intergenic	not near genes	chr2L	16143790	intergenic	not near genes	chr2L	16146414	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-461
401	chr2L	16153715	16153744	chr2L	16160789	16160818	297	6	7071	6.5	4.0	5.2	1.0	7103	chr2L	16153715	intergenic	not near genes	chr2L	16157266	intergenic	not near genes	chr2L	16160818	intergenic	not near genes	chr2L_6_16155001	chr2L_16155001	RAL-461
407	chr2L	16280253	16280280	chr2L	16281418	16281431	1360	5	1169	4.0	2.5	3.2	1.2	1178	chr2L	16280253	intron	crp -	chr2L	16280842	intron	crp -	chr2L	16281431	intron	crp -	chr2L_5_16280001	chr2L_16280001	RAL-461
415	chr2L	16511945	16511992	chr2L	16519077	16519126	HMS-Beagle	12	7131	2.5	4.5	3.5	2.7	7181	chr2L	16511945	intron	CG5953 -	chr2L	16515536	intron	CG5953 -	chr2L	16519126	intron	CG5953 -	chr2L_12_16515001	chr2L_16515001	RAL-461
430	chr2L	16958090	16958126	chr2L	16962898	16962931	Doc	14	4806	8.0	8.0	8.0	1.6	4841	chr2L	16958090	intergenic	not near genes	chr2L	16960510	intergenic	not near genes	chr2L	16962931	intergenic	not near genes	chr2L_14_16960001	chr2L_16960001	RAL-461
438	chr2L	17167577	17167588	chr2L	17167837	17167848	pogo	4	260	3.5	2.5	3.0	1.0	271	chr2L	17167577	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167712	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167848	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	RAL-461
442	chr2L	17199142	17199189	chr2L	17200629	17200636	hobo	12	1482	1.5	2.5	2.0	4.0	1494	chr2L	17199142	intron	beat-IIIc -	chr2L	17199889	intron	beat-IIIc -	chr2L	17200636	intron	beat-IIIc -	chr2L_12_17195001	chr2L_17195001	RAL-461
445	chr2L	17273200	17273229	chr2L	17277981	17277991	F-element	5	4779	1.5	3.0	2.2	1.6	4791	chr2L	17273200	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17277991	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-461
451	chr2L	17432017	17432043	chr2L	17432135	17432170	1360	11	123	0.0	8.5	4.2	2.1	153	chr2L	17432017	intron	Dif -	chr2L	17432094	intron	Dif -	chr2L	17432170	intron	Dif -	chr2L_11_17430001	chr2L_17430001	RAL-461
459	chr2L	17819914	17819931	chr2L	17825128	17825155	copia	4	5218	5.0	1.5	3.2	1.0	5241	chr2L	17819914	intron	CadN2 -	chr2L	17822534	intron	CadN2 -	chr2L	17825155	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-461
462	chr2L	17911958	17911990	chr2L	17914153	17914187	pogo	6	2193	2.0	5.0	3.5	1.3	2229	chr2L	17911958	intergenic	not near genes	chr2L	17913072	intergenic	not near genes	chr2L	17914187	intergenic	CG43271 -	chr2L_6_17910001	chr2L_17910001	RAL-461
463	chr2L	17951931	17951976	chr2L	17953418	17953463	hobo	20	1483	4.0	2.0	3.0	5.0	1532	chr2L	17951931	intergenic	CR44398 -,CR44397 -	chr2L	17952697	intergenic	not near genes	chr2L	17953463	intergenic	not near genes	chr2L_20_17950001	chr2L_17950001	RAL-461
468	chr2L	18051865	18051903	chr2L	18061022	18061065	roo	9	9153	2.5	2.0	2.2	2.8	9200	chr2L	18051865	intron	rdo +	chr2L	18056465	intron	rdo +	chr2L	18061065	intron	rdo +	chr2L_9_18055001	chr2L_18055001	RAL-461
475	chr2L	18408024	18408048	chr2L	18412807	18412840	Doc	6	4793	7.5	0.0	3.8	1.2	4816	chr2L	18408024	intergenic	not near genes	chr2L	18410432	intergenic	not near genes	chr2L	18412840	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-461
488	chr2L	19147358	19147399	chr2L	19154413	19154437	297	5	7046	2.0	3.5	2.8	1.3	7079	chr2L	19147358	intron	brat +	chr2L	19150898	intron	brat +	chr2L	19154437	intron	brat +	chr2L_5_19150001	chr2L_19150001	RAL-461
494	chr2L	19345014	19345041	chr2L	19357222	19357261	blood	6	12222	2.0	2.0	2.0	2.0	12247	chr2L	19345014	intron	dnt -	chr2L	19351138	intron	dnt -	chr2L	19357261	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-461
504	chr2L	19620076	19620130	chr2L	19621083	19621086	jockey	6	995	5.0	1.0	3.0	1.5	1010	chr2L	19620076	intron	Lar +	chr2L	19620581	intron	Lar +	chr2L	19621086	intron	Lar +	chr2L_6_19620001	chr2L_19620001	RAL-461
506	chr2L	19652548	19652587	chr2L	19674004	19674023	opus	13	21453	8.5	4.0	6.2	1.8	21475	chr2L	19652548	intron	Lar +	chr2L	19663286	intron	Lar +	chr2L	19674023	intron	Lar +	chr2L_13_19660001	chr2L_19660001	RAL-461
508	chr2L	19703522	19703567	chr2L	19712674	19712723	roo	13	9152	4.5	6.0	5.2	2.1	9201	chr2L	19703522	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712723	intron	Lar +	chr2L_13_19705001	chr2L_19705001	RAL-461
510	chr2L	19762790	19762831	chr2L	19763052	19763093	pogo	14	260	5.0	4.5	4.8	2.4	303	chr2L	19762790	5` UTR	fbp -	chr2L	19762942	intron	fbp -	chr2L	19763093	intron	fbp -	chr2L_14_19760001	chr2L_19760001	RAL-461
513	chr2L	20005872	20005882	chr2L	20010968	20010978	flea	5	5096	8.0	8.0	8.0	0.6	5106	chr2L	20005872	intron	CG43861 -	chr2L	20008425	intron	CG43861 -	chr2L	20010978	intron	CG43861 -	chr2L_5_20005001	chr2L_20005001	RAL-461
514	chr2L	20005886	20005903	chr2L	20010962	20010999	flea	11	5087	5.0	8.0	6.5	1.5	5113	chr2L	20005886	intron	CG43861 -	chr2L	20008442	intron	CG43861 -	chr2L	20010999	intron	CG43861 -	chr2L_11_20005001	chr2L_20005001	RAL-461
524	chr2L	20272099	20272138	chr2L	20282830	20282861	copia	13	10729	6.5	8.5	7.5	1.5	10762	chr2L	20272099	intergenic	not near genes	chr2L	20277480	intergenic	not near genes	chr2L	20282861	intergenic	not near genes	chr2L_13_20275001	chr2L_20275001	RAL-461
528	chr2L	20303175	20303187	chr2L	20310648	20310675	blood	8	7483	1.5	4.5	3.0	2.0	7500	chr2L	20303175	intergenic	not near genes	chr2L	20306925	intergenic	not near genes	chr2L	20310675	intergenic	not near genes	chr2L_8_20305001	chr2L_20305001	RAL-461
530	chr2L	20372209	20372246	chr2L	20372470	20372472	pogo	7	253	0.5	3.0	1.8	2.5	263	chr2L	20372209	intergenic	Ugt37a1 -	chr2L	20372340	intergenic	Ugt37a1 -	chr2L	20372472	3` UTR	Ugt37a1 -	chr2L_7_20370001	chr2L_20370001	RAL-461
535	chr2L	20568644	20568684	chr2L	20569054	20569094	X-element	13	408	4.0	3.5	3.8	2.7	450	chr2L	20568644	intron	CR45347 +	chr2L	20568869	intron	CR45347 +	chr2L	20569094	intron	CR45347 +	chr2L_13_20565001	chr2L_20565001	RAL-461
536	chr2L	20576199	20576247	chr2L	20583687	20583735	blood	11	7484	7.0	1.5	4.2	2.1	7536	chr2L	20576199	intergenic	CR45347 +	chr2L	20579967	intergenic	not near genes	chr2L	20583735	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RAL-461
541	chr2L	20835792	20835840	chr2L	20836529	20836577	Quasimodo	16	735	2.0	3.0	2.5	4.6	785	chr2L	20835792	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836577	intergenic	Spn38F -	chr2L_16_20835001	chr2L_20835001	RAL-461
542	chr2L	20901476	20901487	chr2L	20902622	20902651	1360	5	1157	0.5	0.5	0.5	3.3	1175	chr2L	20901476	intron,intron	CG43739 -,sky -	chr2L	20902064	intron,intron	CG43739 -,sky -	chr2L	20902651	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-461
547	chr2L	20976643	20976666	chr2L	20981478	20981501	X-element	5	4832	6.5	7.0	6.8	0.6	4858	chr2L	20976643	intron	CG42238 -	chr2L	20979072	intron	CG42238 -	chr2L	20981501	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-461
549	chr2L	21020258	21020299	chr2L	21023955	21023990	NOF	6	3687	4.0	1.0	2.5	1.7	3732	chr2L	21020258	intron	CG42238 -	chr2L	21022124	intron	CG42238 -	chr2L	21023990	intron	CG42238 -	chr2L_6_21020001	chr2L_21020001	RAL-461
550	chr2L	21041151	21041165	chr2L	21049396	21049406	Tirant	5	8258	2.5	3.0	2.8	1.3	8255	chr2L	21041151	intron	CG42238 -	chr2L	21045278	intron	CG42238 -	chr2L	21049406	intron	CG42238 -	chr2L_5_21045001	chr2L_21045001	RAL-461
556	chr2L	21347556	21347563	chr2L	21355048	21355050	blood	4	7490	9.0	7.5	8.2	0.4	7494	chr2L	21347556	intron	Tsp39D +	chr2L	21351303	intron	Tsp39D +	chr2L	21355050	intron	Tsp39D +	chr2L_4_21350001	chr2L_21350001	RAL-461
557	chr2L	21597024	21597060	chr2L	21604782	21604824	roo	8	7759	3.0	4.5	3.8	1.7	7800	chr2L	21597024	intergenic	not near genes	chr2L	21600924	intergenic	not near genes	chr2L	21604824	intergenic	not near genes	chr2L_8_21600001	chr2L_21600001	RAL-461
558	chr2L	21691807	21691841	chr2L	21698297	21698329	Burdock	10	6489	5.5	0.0	2.8	2.6	6522	chr2L	21691807	intron	CG31619 +	chr2L	21695068	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_10_21695001	chr2L_21695001	RAL-461
569	chr2L	21981667	21981712	chr2L	21990852	21990882	roo	11	9178	3.5	6.0	4.8	1.9	9215	chr2L	21981667	exon	CG2528 -	chr2L	21986274	intron	CG2528 -	chr2L	21990882	exon	CG2528 -	chr2L_11_21985001	chr2L_21985001	RAL-461
574	chr2L	22548921	22548940	chr2L	22550166	22550185	1360	8	1244	0.0	14.0	7.0	1.0	1264	chr2L	22548921	intergenic	CG17490 +	chr2L	22549553	intergenic	not near genes	chr2L	22550185	intergenic	CG17493 +	chr2L_8_22545001	chr2L_22545001	RAL-461
576	chr2L	22581950	22581991	chr2L	22583759	22583800	S-element	8	1809	7.0	5.5	6.2	1.1	1850	chr2L	22581950	intron	CG17494 +	chr2L	22582875	intron	CG17494 +	chr2L	22583800	intron	CG17494 +	chr2L_8_22580001	chr2L_22580001	RAL-461
577	chr2L	22719421	22719462	chr2L	22727564	22727596	gypsy2	11	8139	2.0	2.5	2.2	3.4	8175	chr2L	22719421	intron	CG40006 -	chr2L	22723508	intron	CG40006 -	chr2L	22727596	intron	CG40006 -	chr2L_11_22720001	chr2L_22720001	RAL-461
578	chr2L	22776401	22776452	chr2L	22778209	22778261	S-element	24	1807	6.5	6.5	6.5	3.2	1860	chr2L	22776401	intergenic	not near genes	chr2L	22777331	intergenic	not near genes	chr2L	22778261	intergenic	not near genes	chr2L_24_22775001	chr2L_22775001	RAL-461
580	chr2L	23006483	23006530	chr2L	23007179	23007220	Osvaldo	9	691	4.0	5.0	4.5	1.6	737	chr2L	23006483	intron	Cht3 -	chr2L	23006852	intron	Cht3 -	chr2L	23007220	intron	Cht3 -	chr2L_9_23005001	chr2L_23005001	RAL-461
581	chr2R	529315	529354	chr2R	537960	537983	Max-element	10	8639	3.5	4.5	4.0	2.0	8668	chr2R	529315	intron	CG40378 +	chr2R	533649	intron	CG40378 +	chr2R	537983	intron	CG40378 +	chr2R_10_530001	chr2R_530001	RAL-461
582	chr2R	1320201	1320201	chr2R	11463556	11463556	invader1	4	10143355	9.0	16.5	12.8	0.3	10143355	chr2R	1320201	intergenic	not near genes	chr2R	6391878	intergenic	not near genes	chr2R	11463556	3` UTR	E(Pc) +	chr2R_4_6390001	chr2R_6390001	RAL-461
583	chr2R	1516587	1516603	chr2R	1521335	1521346	1731	14	4747	54.5	35.0	44.8	0.3	4759	chr2R	1516587	exon	Maf1 -	chr2R	1518966	intron	Maf1 -	chr2R	1521346	5` UTR	Maf1 -	chr2R_14_1515001	chr2R_1515001	RAL-461
584	chr2R	2498977	2499000	chr2R	2508129	2508166	roo	5	9163	3.5	4.5	4.0	1.0	9189	chr2R	2498977	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508166	intron	MFS17 -	chr2R_5_2500001	chr2R_2500001	RAL-461
585	chr2R	2591521	2591558	chr2R	2594212	2594218	roo	4	2679	26.0	11.5	18.8	0.2	2697	chr2R	2591521	intergenic	not near genes	chr2R	2592870	intergenic	not near genes	chr2R	2594218	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	RAL-461
586	chr2R	3532599	3532642	chr2R	3536062	3536095	Doc	12	3461	4.5	2.0	3.2	2.9	3496	chr2R	3532599	intergenic	not near genes	chr2R	3534347	intergenic	not near genes	chr2R	3536095	intergenic	not near genes	chr2R_12_3530001	chr2R_3530001	RAL-461
588	chr2R	4622934	4622982	chr2R	4624112	4624161	1360	10	1174	3.5	4.5	4.0	2.0	1227	chr2R	4622934	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624161	intergenic	not near genes	chr2R_10_4620001	chr2R_4620001	RAL-461
593	chr2R	4838855	4838899	chr2R	4840398	4840442	transib2	8	1536	5.5	3.0	4.2	1.5	1587	chr2R	4838855	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840442	intergenic	not near genes	chr2R_8_4835001	chr2R_4835001	RAL-461
594	chr2R	4870725	4870743	chr2R	4871256	4871266	R1A1-element	8	530	5.5	5.5	5.5	1.2	541	chr2R	4870725	intergenic	not near genes	chr2R	4870996	intergenic	not near genes	chr2R	4871266	intergenic	not near genes	chr2R_8_4870001	chr2R_4870001	RAL-461
605	chr2R	5417976	5418027	chr2R	5420628	5420677	Burdock	11	2648	6.5	7.0	6.8	1.4	2701	chr2R	5417976	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420677	intron	laccase2 +	chr2R_11_5415001	chr2R_5415001	RAL-461
609	chr2R	5543209	5543221	chr2R	5547283	5547325	invader1	7	4098	0.0	5.5	2.8	1.8	4116	chr2R	5543209	intron	CG30438 +	chr2R	5545267	intron	CG30438 +	chr2R	5547325	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	RAL-461
611	chr2R	5869267	5869280	chr2R	5874353	5874359	flea	6	5089	11.0	2.5	6.8	0.8	5092	chr2R	5869267	intergenic	not near genes	chr2R	5871813	intergenic	not near genes	chr2R	5874359	intergenic	not near genes	chr2R_6_5870001	chr2R_5870001	RAL-461
612	chr2R	5869281	5869308	chr2R	5874352	5874394	flea	8	5089	5.5	2.5	4.0	1.6	5113	chr2R	5869281	intergenic	not near genes	chr2R	5871838	intergenic	not near genes	chr2R	5874394	intergenic	not near genes	chr2R_8_5870001	chr2R_5870001	RAL-461
616	chr2R	5902155	5902194	chr2R	5909718	5909773	17.6	9	7576	5.5	3.5	4.5	1.6	7618	chr2R	5902155	intron	CG43366 +	chr2R	5905964	intron	CG43366 +	chr2R	5909773	intron	CG43366 +	chr2R_9_5905001	chr2R_5905001	RAL-461
631	chr2R	6579755	6579803	chr2R	6584860	6584909	flea	20	5105	5.0	4.5	4.8	3.4	5154	chr2R	6579755	intron	jing +	chr2R	6582332	intron	jing +	chr2R	6584909	intron	jing +	chr2R_20_6580001	chr2R_6580001	RAL-461
639	chr2R	6952155	6952182	chr2R	6959755	6959781	opus	9	7600	1.0	6.5	3.8	1.9	7626	chr2R	6952155	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959781	intron,intron	mim -,CheB42c -	chr2R_9_6955001	chr2R_6955001	RAL-461
648	chr2R	7196557	7196589	chr2R	7201352	7201384	F-element	12	4794	5.5	0.0	2.8	3.2	4827	chr2R	7196557	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201384	intron	pk +	chr2R_12_7195001	chr2R_7195001	RAL-461
649	chr2R	7209846	7209870	chr2R	7217602	7217638	roo	8	7765	6.0	8.5	7.2	1.0	7792	chr2R	7209846	intron	pk +	chr2R	7213742	intron	pk +	chr2R	7217638	intron	pk +	chr2R_8_7210001	chr2R_7210001	RAL-461
653	chr2R	7434879	7434911	chr2R	7439198	7439227	Juan	9	4319	6.5	8.5	7.5	1.1	4348	chr2R	7434879	intergenic	so +	chr2R	7437053	intergenic	not near genes	chr2R	7439227	intergenic	not near genes	chr2R_9_7435001	chr2R_7435001	RAL-461
657	chr2R	7815653	7815703	chr2R	7822141	7822142	Burdock	11	6481	3.5	6.0	4.8	1.9	6489	chr2R	7815653	intergenic	CG1882 +	chr2R	7818898	intergenic	not near genes	chr2R	7822142	3` UTR	cathD -	chr2R_11_7815001	chr2R_7815001	RAL-461
658	chr2R	7869196	7869211	chr2R	7873980	7873999	Doc	5	4798	5.0	3.5	4.2	1.0	4803	chr2R	7869196	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7873999	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-461
665	chr2R	8330851	8330890	chr2R	8331357	8331396	roo	11	506	2.5	4.0	3.2	2.6	545	chr2R	8330851	intron	pdm3 +	chr2R	8331124	intron	pdm3 +	chr2R	8331396	intron	pdm3 +	chr2R_11_8330001	chr2R_8330001	RAL-461
667	chr2R	8398192	8398233	chr2R	8402993	8403034	Doc	4	4794	2.0	1.0	1.5	1.6	4842	chr2R	8398192	intron	CG2121 -	chr2R	8400613	intron	CG2121 -	chr2R	8403034	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-461
672	chr2R	8722743	8722789	chr2R	8723004	8723031	pogo	11	253	3.5	2.0	2.8	2.9	288	chr2R	8722743	intron	CG14767 -	chr2R	8722887	intron	CG14767 -	chr2R	8723031	intron	CG14767 -	chr2R_11_8720001	chr2R_8720001	RAL-461
680	chr2R	9151280	9151334	chr2R	9157770	9157823	Burdock	12	6487	1.5	3.0	2.2	3.8	6543	chr2R	9151280	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157823	intergenic	CG8008 -	chr2R_12_9150001	chr2R_9150001	RAL-461
687	chr2R	9480063	9480100	chr2R	9490607	9490644	roo	5	10546	8.0	6.0	7.0	0.6	10581	chr2R	9480063	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490644	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-461
692	chr2R	9726598	9726642	chr2R	9734169	9734190	17.6	12	7568	2.5	5.5	4.0	2.4	7592	chr2R	9726598	intron	sqa -	chr2R	9730394	intron	sqa -	chr2R	9734190	intron	sqa -	chr2R_12_9730001	chr2R_9730001	RAL-461
694	chr2R	9945419	9945470	chr2R	9945634	9945671	BS	6	211	4.0	1.5	2.8	1.6	252	chr2R	9945419	intron	Mef2 -	chr2R	9945545	intron	Mef2 -	chr2R	9945671	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-461
700	chr2R	10176867	10176908	chr2R	10186052	10186098	roo	16	9188	3.5	6.0	4.8	2.8	9231	chr2R	10176867	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186098	intron	KCNQ -	chr2R_16_10180001	chr2R_10180001	RAL-461
715	chr2R	10622364	10622386	chr2R	10637117	10637138	mdg1	6	14754	2.5	5.0	3.8	1.2	14774	chr2R	10622364	intron	CG11883 +	chr2R	10629751	intron	CG11883 +	chr2R	10637138	intron	CG11883 +	chr2R_6_10625001	chr2R_10625001	RAL-461
722	chr2R	10948032	10948060	chr2R	10955611	10955619	17.6	5	7574	1.0	4.0	2.5	1.4	7587	chr2R	10948032	intergenic	not near genes	chr2R	10951826	intergenic	not near genes	chr2R	10955619	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	RAL-461
724	chr2R	11009795	11009835	chr2R	11018989	11019028	roo	7	9190	3.0	1.5	2.2	2.2	9233	chr2R	11009795	intron	luna -	chr2R	11014412	intron	luna -	chr2R	11019028	intron	luna -	chr2R_7_11010001	chr2R_11010001	RAL-461
725	chr2R	11019894	11019904	chr2R	11024940	11024980	jockey	4	5064	2.0	2.5	2.2	1.2	5086	chr2R	11019894	intron	luna -	chr2R	11022437	intron	luna -	chr2R	11024980	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-461
737	chr2R	11207827	11207846	chr2R	11208012	11208054	BS	10	199	2.0	6.0	4.0	2.0	227	chr2R	11207827	intron	shn +	chr2R	11207940	intron	shn +	chr2R	11208054	intron	shn +	chr2R_10_11205001	chr2R_11205001	RAL-461
739	chr2R	11297619	11297637	chr2R	11301963	11301981	flea	10	4342	3.5	0.0	1.8	3.6	4362	chr2R	11297619	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11301981	5` UTR	CG7741 +	chr2R_10_11295001	chr2R_11295001	RAL-461
741	chr2R	11415522	11415551	chr2R	11418666	11418700	opus	10	3144	2.5	5.0	3.8	2.1	3178	chr2R	11415522	intron	Drip -	chr2R	11417111	intron	Drip -	chr2R	11418700	intron	Drip -	chr2R_10_11415001	chr2R_11415001	RAL-461
742	chr2R	11472627	11472679	chr2R	11473844	11473886	pogo	14	1211	5.5	5.5	5.5	2.2	1259	chr2R	11472627	intergenic	not near genes	chr2R	11473256	intergenic	not near genes	chr2R	11473886	intergenic	not near genes	chr2R_14_11470001	chr2R_11470001	RAL-461
765	chr2R	12707499	12707544	chr2R	12715885	12715930	roo	17	8385	4.0	3.5	3.8	3.5	8431	chr2R	12707499	intron	CG42663 +	chr2R	12711714	intron	CG42663 +	chr2R	12715930	intron	CG42663 +	chr2R_17_12710001	chr2R_12710001	RAL-461
768	chr2R	12819427	12819466	chr2R	12824520	12824558	jockey	10	5090	3.0	1.0	2.0	3.3	5131	chr2R	12819427	intergenic	not near genes	chr2R	12821992	intergenic	not near genes	chr2R	12824558	intergenic	not near genes	chr2R_10_12820001	chr2R_12820001	RAL-461
777	chr2R	13136823	13136858	chr2R	13141641	13141676	Doc	8	4816	4.5	3.0	3.8	1.7	4853	chr2R	13136823	exon	Cap-G +	chr2R	13139250	intron	Cap-G +	chr2R	13141676	intron	Cap-G +	chr2R_8_13135001	chr2R_13135001	RAL-461
789	chr2R	13580483	13580520	chr2R	13580853	13580858	jockey	4	360	1.0	2.0	1.5	1.6	375	chr2R	13580483	3` UTR	CG6191 -	chr2R	13580670	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580858	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-461
792	chr2R	13728115	13728163	chr2R	13735792	13735830	opus	16	7675	5.0	4.0	4.5	2.9	7715	chr2R	13728115	intron	fas +	chr2R	13731972	intron	fas +	chr2R	13735830	intron	fas +	chr2R_16_13730001	chr2R_13730001	RAL-461
805	chr2R	14394212	14394237	chr2R	14399021	14399036	Doc	11	4808	4.5	6.0	5.2	1.8	4824	chr2R	14394212	intergenic	not near genes	chr2R	14396624	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_11_14395001	chr2R_14395001	RAL-461
807	chr2R	14467303	14467323	chr2R	14476481	14476501	roo	4	9178	1.5	6.5	4.0	0.8	9198	chr2R	14467303	intergenic	not near genes	chr2R	14471902	intergenic	not near genes	chr2R	14476501	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-461
808	chr2R	14497369	14497416	chr2R	14498555	14498602	1360	11	1186	1.0	4.5	2.8	2.9	1233	chr2R	14497369	3` UTR	Cpsf160 -	chr2R	14497986	intron	Cpsf160 -	chr2R	14498602	3` UTR	Cpsf160 -	chr2R_11_14495001	chr2R_14495001	RAL-461
819	chr2R	14889200	14889236	chr2R	14897818	14897819	Max-element	14	8619	7.0	0.0	3.5	3.1	8619	chr2R	14889200	intergenic	Cyp6a8 -	chr2R	14893510	intergenic	not near genes	chr2R	14897819	intergenic	not near genes	chr2R_14_14890001	chr2R_14890001	RAL-461
824	chr2R	15004709	15004754	chr2R	15005058	15005091	jockey	8	345	6.5	5.0	5.8	1.2	382	chr2R	15004709	intergenic	not near genes	chr2R	15004900	intergenic	not near genes	chr2R	15005091	intergenic	not near genes	chr2R_8_15000001	chr2R_15000001	RAL-461
825	chr2R	15015454	15015472	chr2R	15022893	15022916	mdg1	6	7443	3.0	3.0	3.0	1.5	7462	chr2R	15015454	intron	hbs +	chr2R	15019185	intron	hbs +	chr2R	15022916	intron	hbs +	chr2R_6_15015001	chr2R_15015001	RAL-461
826	chr2R	15015478	15015489	chr2R	15022887	15022924	mdg1	5	7431	3.0	3.0	3.0	1.2	7446	chr2R	15015478	intron	hbs +	chr2R	15019201	intron	hbs +	chr2R	15022924	intron	hbs +	chr2R_5_15015001	chr2R_15015001	RAL-461
831	chr2R	15084975	15084987	chr2R	15092029	15092055	297	6	7065	5.0	2.0	3.5	1.3	7080	chr2R	15084975	intergenic	not near genes	chr2R	15088515	intergenic	not near genes	chr2R	15092055	5` UTR	CR44457 +	chr2R_6_15085001	chr2R_15085001	RAL-461
832	chr2R	15084992	15085000	chr2R	15092026	15092069	297	4	7060	5.0	1.5	3.2	1.0	7077	chr2R	15084992	intergenic	not near genes	chr2R	15088530	intergenic	not near genes	chr2R	15092069	5` UTR	CR44457 +	chr2R_4_15085001	chr2R_15085001	RAL-461
833	chr2R	15119315	15119332	chr2R	15127801	15127833	Tirant	5	8495	2.5	2.5	2.5	1.4	8518	chr2R	15119315	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127833	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-461
857	chr2R	16539619	16539667	chr2R	16544848	16544896	copia	13	5229	3.5	2.5	3.0	3.2	5277	chr2R	16539619	intergenic	not near genes	chr2R	16542258	intergenic	not near genes	chr2R	16544896	intergenic	not near genes	chr2R_13_16540001	chr2R_16540001	RAL-461
869	chr2R	17147227	17147265	chr2R	17152278	17152309	jockey	8	5048	3.5	5.5	4.5	1.5	5082	chr2R	17147227	intergenic	not near genes	chr2R	17149768	intergenic	not near genes	chr2R	17152309	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	RAL-461
872	chr2R	17236494	17236525	chr2R	17241718	17241742	copia	5	5221	3.0	3.0	3.0	1.2	5248	chr2R	17236494	intron	mbl +	chr2R	17239118	intron	mbl +	chr2R	17241742	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-461
876	chr2R	17485910	17485934	chr2R	17490678	17490715	F-element	12	4777	7.5	5.0	6.2	1.7	4805	chr2R	17485910	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488312	intron	NT5E-2 +	chr2R	17490715	intron	NT5E-2 +	chr2R_12_17485001	chr2R_17485001	RAL-461
881	chr2R	17782342	17782392	chr2R	17783565	17783615	pogo	10	1220	2.5	3.5	3.0	2.5	1273	chr2R	17782342	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783615	intergenic	mir-31a -	chr2R_10_17780001	chr2R_17780001	RAL-461
882	chr2R	17784004	17784055	chr2R	17784265	17784301	pogo	11	257	3.0	3.0	3.0	2.8	297	chr2R	17784004	intergenic	mir-31a -	chr2R	17784152	intergenic	mir-31a -	chr2R	17784301	intergenic	mir-31a -	chr2R_11_17780001	chr2R_17780001	RAL-461
886	chr2R	18045652	18045701	chr2R	18046024	18046062	jockey	19	371	4.0	5.5	4.8	3.3	410	chr2R	18045652	intergenic	not near genes	chr2R	18045857	intergenic	not near genes	chr2R	18046062	intergenic	CG5767 -	chr2R_19_18045001	chr2R_18045001	RAL-461
887	chr2R	18111692	18111713	chr2R	18115565	18115593	F-element	7	3885	0.5	4.5	2.5	2.0	3901	chr2R	18111692	intergenic	not near genes	chr2R	18113642	intergenic	not near genes	chr2R	18115593	intergenic	not near genes	chr2R_7_18110001	chr2R_18110001	RAL-461
892	chr2R	18358380	18358401	chr2R	18372605	18372633	roo	7	14229	5.0	0.0	2.5	2.0	14253	chr2R	18358380	intergenic	not near genes	chr2R	18365506	intergenic	not near genes	chr2R	18372633	intergenic	not near genes	chr2R_7_18365001	chr2R_18365001	RAL-461
902	chr2R	18575810	18575811	chr2R	18581986	18582019	3S18	4	6190	2.0	5.5	3.8	0.8	6209	chr2R	18575810	intron	GEFmeso -	chr2R	18578914	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-461
903	chr2R	18575812	18575829	chr2R	18581984	18582037	3S18	6	6192	1.0	5.5	3.2	1.4	6225	chr2R	18575812	intron	GEFmeso -	chr2R	18578924	intron	GEFmeso -	chr2R	18582037	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	RAL-461
923	chr2R	19776580	19776630	chr2R	19779918	19779943	jockey	10	3337	5.0	6.5	5.8	1.5	3363	chr2R	19776580	intergenic	not near genes	chr2R	19778262	intergenic	not near genes	chr2R	19779943	intergenic	not near genes	chr2R_10_19775001	chr2R_19775001	RAL-461
928	chr2R	20069234	20069253	chr2R	20071892	20071910	opus	5	2658	0.5	2.0	1.2	2.3	2676	chr2R	20069234	intergenic	not near genes	chr2R	20070572	intergenic	not near genes	chr2R	20071910	intergenic	not near genes	chr2R_5_20070001	chr2R_20070001	RAL-461
929	chr2R	20087982	20088027	chr2R	20088106	20088155	1360	8	124	1.5	5.5	3.5	1.8	173	chr2R	20087982	intergenic	not near genes	chr2R	20088068	intergenic	not near genes	chr2R	20088155	intergenic	not near genes	chr2R_8_20085001	chr2R_20085001	RAL-461
939	chr2R	20739421	20739459	chr2R	20744209	20744219	F-element	6	4783	3.0	2.0	2.5	1.7	4798	chr2R	20739421	intron	dpr +	chr2R	20741820	intron	dpr +	chr2R	20744219	intron	dpr +	chr2R_6_20740001	chr2R_20740001	RAL-461
940	chr2R	20783304	20783328	chr2R	20788083	20788120	F-element	8	4784	2.5	4.0	3.2	1.9	4816	chr2R	20783304	intergenic	not near genes	chr2R	20785712	intergenic	not near genes	chr2R	20788120	intergenic	CG43666 -	chr2R_8_20785001	chr2R_20785001	RAL-461
944	chr2R	21151131	21151145	chr2R	21153762	21153798	opus	4	2641	0.0	4.0	2.0	1.3	2667	chr2R	21151131	intron	CG30389 -	chr2R	21152464	intron	CG30389 -	chr2R	21153798	intron	CG30389 -	chr2R_4_21150001	chr2R_21150001	RAL-461
951	chr2R	21753063	21753109	chr2R	21753567	21753579	roo	13	499	5.0	2.0	3.5	2.9	516	chr2R	21753063	intergenic	not near genes	chr2R	21753321	intergenic	not near genes	chr2R	21753579	intergenic	not near genes	chr2R_13_21750001	chr2R_21750001	RAL-461
952	chr2R	21809505	21809509	chr2R	21817765	21817769	roo	5	8260	10.0	1.5	5.8	0.7	8264	chr2R	21809505	intergenic	not near genes	chr2R	21813637	intergenic	not near genes	chr2R	21817769	intergenic	not near genes	chr2R_5_21810001	chr2R_21810001	RAL-461
953	chr2R	21809512	21809551	chr2R	21817762	21817771	roo	11	8255	6.0	1.0	3.5	2.4	8259	chr2R	21809512	intergenic	not near genes	chr2R	21813642	intergenic	not near genes	chr2R	21817771	intergenic	not near genes	chr2R_11_21810001	chr2R_21810001	RAL-461
970	chr2R	22349673	22349723	chr2R	22351477	22351514	jockey	6	1801	3.0	3.5	3.2	1.4	1841	chr2R	22349673	intron	Liprin-gamma -	chr2R	22350594	intron	Liprin-gamma -	chr2R	22351514	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-461
973	chr2R	22774947	22774990	chr2R	22775386	22775429	jockey	12	438	6.0	5.0	5.5	1.8	482	chr2R	22774947	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775429	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-461
993	chr2R	23914293	23914328	chr2R	23921937	23921972	412	5	7631	2.5	2.0	2.2	1.6	7679	chr2R	23914293	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921972	exon	kcc +	chr2R_5_23915001	chr2R_23915001	RAL-461
998	chr2R	24177214	24177264	chr2R	24184719	24184730	412	21	7499	6.5	7.0	6.8	2.7	7516	chr2R	24177214	3` UTR	Nop60B +	chr2R	24180972	intron	Nop60B +	chr2R	24184730	3` UTR	Nop60B +	chr2R_21_24180001	chr2R_24180001	RAL-461
1001	chr2R	24353415	24353443	chr2R	24361797	24361825	roo	9	8377	3.0	3.5	3.2	2.1	8410	chr2R	24353415	intron,intron	bs +,CR44811 -	chr2R	24357620	intron,intron	bs +,CR44811 -	chr2R	24361825	intron,intron	bs +,CR44811 -	chr2R_9_24355001	chr2R_24355001	RAL-461
1006	chr2R	24647602	24647615	chr2R	24655158	24655192	412	4	7570	4.5	3.0	3.8	0.8	7590	chr2R	24647602	intergenic	not near genes	chr2R	24651397	intergenic	not near genes	chr2R	24655192	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	RAL-461
1008	chr2R	24763610	24763627	chr2R	24765599	24765623	G2	4	1988	0.5	3.0	1.8	1.4	2013	chr2R	24763610	exon	CG3894 +	chr2R	24764616	intron	CG3894 +	chr2R	24765623	exon	CG3894 +	chr2R_4_24760001	chr2R_24760001	RAL-461
1013	chr2R	25141646	25141681	chr2R	25159339	25159381	roo	18	17702	7.0	6.0	6.5	2.4	17735	chr2R	25141646	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159381	intergenic	not near genes	chr2R_18_25150001	chr2R_25150001	RAL-461
1016	chr3L	110199	110238	chr3L	119376	119399	roo	14	9179	5.5	6.5	6.0	2.0	9200	chr3L	110199	intergenic	not near genes	chr3L	114799	intergenic	not near genes	chr3L	119399	intergenic	not near genes	chr3L_14_110001	chr3L_110001	RAL-461
1019	chr3L	402686	402714	chr3L	409742	409781	297	13	7066	1.5	4.5	3.0	3.2	7095	chr3L	402686	intergenic	not near genes	chr3L	406234	intergenic	not near genes	chr3L	409781	intergenic	not near genes	chr3L_13_405001	chr3L_405001	RAL-461
1029	chr3L	789900	789927	chr3L	790398	790398	roo	5	493	3.0	3.5	3.2	1.2	498	chr3L	789900	intergenic	not near genes	chr3L	790149	intergenic	not near genes	chr3L	790398	intergenic	not near genes	chr3L_5_790001	chr3L_790001	RAL-461
1035	chr3L	925178	925183	chr3L	932623	932629	mdg1	4	7444	5.5	2.5	4.0	0.8	7451	chr3L	925178	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932629	intron	Glut1 +	chr3L_4_925001	chr3L_925001	RAL-461
1036	chr3L	925184	925209	chr3L	932600	932655	mdg1	14	7439	4.5	1.0	2.8	3.7	7471	chr3L	925184	intron	Glut1 +	chr3L	928920	intron	Glut1 +	chr3L	932655	intron	Glut1 +	chr3L_14_925001	chr3L_925001	RAL-461
1038	chr3L	939760	939799	chr3L	940901	940929	jockey	8	1140	1.5	9.0	5.2	1.3	1169	chr3L	939760	intron	Glut1 +	chr3L	940344	intron	Glut1 +	chr3L	940929	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RAL-461
1043	chr3L	1154128	1154162	chr3L	1163288	1163327	roo	9	9160	2.0	1.0	1.5	3.6	9199	chr3L	1154128	intron	bab2 -	chr3L	1158728	intron	bab2 -	chr3L	1163327	intron	bab2 -	chr3L_9_1155001	chr3L_1155001	RAL-461
1045	chr3L	1219595	1219613	chr3L	1227332	1227366	412	6	7740	3.5	1.0	2.2	1.9	7771	chr3L	1219595	intron	mwh +	chr3L	1223480	intron	mwh +	chr3L	1227366	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-461
1053	chr3L	1740847	1740877	chr3L	1741095	1741108	pogo	4	246	4.5	3.5	4.0	0.8	261	chr3L	1740847	intron	Gk +	chr3L	1740978	intron	Gk +	chr3L	1741108	intron	Gk +	chr3L_4_1740001	chr3L_1740001	RAL-461
1057	chr3L	2108240	2108259	chr3L	2113464	2113478	copia	8	5223	3.5	10.0	6.8	1.0	5238	chr3L	2108240	intron	sls -	chr3L	2110859	intron	sls -	chr3L	2113478	intron	sls -	chr3L_8_2110001	chr3L_2110001	RAL-461
1058	chr3L	2108261	2108284	chr3L	2113460	2113502	copia	6	5214	3.0	9.5	6.2	0.8	5241	chr3L	2108261	intron	sls -	chr3L	2110882	intron	sls -	chr3L	2113502	intron	sls -	chr3L_6_2110001	chr3L_2110001	RAL-461
1070	chr3L	2447489	2447531	chr3L	2456665	2456707	roo	7	9166	2.5	3.5	3.0	1.8	9218	chr3L	2447489	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456707	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-461
1080	chr3L	2927821	2927872	chr3L	2936118	2936168	Tirant	12	8295	4.5	4.0	4.2	2.3	8347	chr3L	2927821	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936168	intron	Shab +	chr3L_12_2930001	chr3L_2930001	RAL-461
1084	chr3L	3051724	3051752	chr3L	3051986	3052007	pogo	9	260	8.5	1.5	5.0	1.5	283	chr3L	3051724	3` UTR	CG32485 +	chr3L	3051866	intergenic	CG32485 +	chr3L	3052007	intergenic	CG32485 +	chr3L_9_3050001	chr3L_3050001	RAL-461
1089	chr3L	3281442	3281450	chr3L	3281944	3281960	Doc	4	511	5.0	5.5	5.2	0.6	518	chr3L	3281442	intron	CG12017 +	chr3L	3281701	intron	CG12017 +	chr3L	3281960	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-461
1090	chr3L	3281454	3281470	chr3L	3281931	3281986	Doc	7	493	2.0	2.5	2.2	2.2	532	chr3L	3281454	intron	CG12017 +	chr3L	3281720	intron	CG12017 +	chr3L	3281986	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-461
1099	chr3L	3601293	3601329	chr3L	3606624	3606658	copia	9	5317	2.5	3.5	3.0	2.2	5365	chr3L	3601293	intron	Eip63E +	chr3L	3603976	intron	Eip63E +	chr3L	3606658	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	RAL-461
1109	chr3L	4328737	4328762	chr3L	4336235	4336280	412	10	7510	3.5	4.0	3.8	2.1	7543	chr3L	4328737	intron	Cip4 -	chr3L	4332508	intron	Cip4 -	chr3L	4336280	exon	Cip4 -	chr3L_10_4330001	chr3L_4330001	RAL-461
1120	chr3L	4901113	4901160	chr3L	4907323	4907370	diver	4	6209	5.0	2.0	3.5	0.9	6257	chr3L	4901113	intergenic	CG13704 +	chr3L	4904242	intergenic	not near genes	chr3L	4907370	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-461
1122	chr3L	5045436	5045458	chr3L	5050237	5050259	Doc	5	4800	8.0	2.5	5.2	0.8	4823	chr3L	5045436	intron	Con -	chr3L	5047848	intron	Con -	chr3L	5050259	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-461
1123	chr3L	5045468	5045480	chr3L	5050234	5050244	Doc	5	4780	5.5	1.5	3.5	1.1	4776	chr3L	5045468	intron	Con -	chr3L	5047856	intron	Con -	chr3L	5050244	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-461
1134	chr3L	5537701	5537748	chr3L	5538063	5538110	jockey	9	354	6.5	10.5	8.5	0.9	409	chr3L	5537701	intergenic	not near genes	chr3L	5537906	intergenic	not near genes	chr3L	5538110	intergenic	CG10625 -	chr3L_9_5535001	chr3L_5535001	RAL-461
1137	chr3L	5910017	5910056	chr3L	5910278	5910317	pogo	15	258	6.5	8.0	7.2	1.8	300	chr3L	5910017	intron	CG13288 +	chr3L	5910167	intron	CG13288 +	chr3L	5910317	intron	CG13288 +	chr3L_15_5910001	chr3L_5910001	RAL-461
1141	chr3L	6001675	6001713	chr3L	6004385	6004433	jockey	15	2716	5.0	3.0	4.0	3.0	2758	chr3L	6001675	intron	PVRAP +	chr3L	6003054	intron	PVRAP +	chr3L	6004433	intron	PVRAP +	chr3L_15_6000001	chr3L_6000001	RAL-461
1144	chr3L	6220925	6220948	chr3L	6230070	6230120	roo	5	9163	4.0	5.5	4.8	0.9	9195	chr3L	6220925	5` UTR	pncr008:3L +	chr3L	6225522	intergenic	not near genes	chr3L	6230120	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-461
1147	chr3L	6335023	6335042	chr3L	6335498	6335533	297	5	487	1.0	4.5	2.8	1.3	510	chr3L	6335023	intron	CG13300 -	chr3L	6335278	intron	CG13300 -	chr3L	6335533	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RAL-461
1150	chr3L	6405645	6405667	chr3L	6432130	6432137	roo	5	26480	4.0	0.0	2.0	1.7	26492	chr3L	6405645	intron	CG42747 +	chr3L	6418891	intron	CG42747 +	chr3L	6432137	intron	CG42747 +	chr3L_5_6415001	chr3L_6415001	RAL-461
1154	chr3L	6781109	6781133	chr3L	6783142	6783146	Doc	6	2026	11.5	0.0	5.8	0.9	2037	chr3L	6781109	intergenic	not near genes	chr3L	6782128	intergenic	not near genes	chr3L	6783146	intergenic	not near genes	chr3L_6_6780001	chr3L_6780001	RAL-461
1157	chr3L	6887281	6887299	chr3L	6895255	6895277	roo	6	7977	1.0	3.0	2.0	2.0	7996	chr3L	6887281	intergenic	not near genes	chr3L	6891279	intergenic	not near genes	chr3L	6895277	intergenic	not near genes	chr3L_6_6890001	chr3L_6890001	RAL-461
1160	chr3L	6994893	6994911	chr3L	6995523	6995541	BS	4	629	1.0	1.5	1.2	1.8	648	chr3L	6994893	intergenic	bin +	chr3L	6995217	intergenic	not near genes	chr3L	6995541	intergenic	not near genes	chr3L_4_6995001	chr3L_6995001	RAL-461
1172	chr3L	7377312	7377344	chr3L	7380437	7380469	297	13	3123	5.0	9.0	7.0	1.6	3157	chr3L	7377312	intron	SMSr -	chr3L	7378890	intron	SMSr -	chr3L	7380469	intron	SMSr -	chr3L_13_7375001	chr3L_7375001	RAL-461
1175	chr3L	7498718	7498737	chr3L	7503544	7503563	F-element	5	4826	3.5	7.5	5.5	0.8	4845	chr3L	7498718	5` UTR	CG8539 -	chr3L	7501140	intergenic	not near genes	chr3L	7503563	intergenic	not near genes	chr3L_5_7500001	chr3L_7500001	RAL-461
1184	chr3L	7793717	7793742	chr3L	7800764	7800804	297	9	7065	9.0	4.0	6.5	1.2	7087	chr3L	7793717	intron	CG32369 -	chr3L	7797260	intron	CG32369 -	chr3L	7800804	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-461
1187	chr3L	7886503	7886545	chr3L	7889041	7889081	Stalker4	6	2536	1.5	2.5	2.0	2.0	2578	chr3L	7886503	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889081	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-461
1189	chr3L	7916811	7916853	chr3L	7926002	7926044	roo	14	9190	4.5	2.5	3.5	3.1	9233	chr3L	7916811	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926044	3` UTR	syd -	chr3L_14_7920001	chr3L_7920001	RAL-461
1190	chr3L	7985352	7985397	chr3L	7987700	7987719	NOF	15	2339	3.0	4.5	3.8	3.1	2367	chr3L	7985352	intron	nmo +	chr3L	7986536	intron	nmo +	chr3L	7987719	intron	nmo +	chr3L_15_7985001	chr3L_7985001	RAL-461
1191	chr3L	8019730	8019735	chr3L	8024123	8024171	NOF	4	4424	0.0	2.5	1.2	1.8	4441	chr3L	8019730	intron	nmo +	chr3L	8021950	intron	nmo +	chr3L	8024171	intron	nmo +	chr3L_4_8020001	chr3L_8020001	RAL-461
1198	chr3L	8498289	8498315	chr3L	8505776	8505802	blood	4	7484	8.0	9.5	8.8	0.4	7513	chr3L	8498289	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505802	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-461
1201	chr3L	8791259	8791299	chr3L	8796699	8796709	I-element	18	5436	3.5	9.0	6.2	2.5	5450	chr3L	8791259	exon	Fhos +	chr3L	8793984	intron	Fhos +	chr3L	8796709	intron	Fhos +	chr3L_18_8790001	chr3L_8790001	RAL-461
1210	chr3L	9076914	9076955	chr3L	9084487	9084505	412	17	7574	4.5	3.0	3.8	3.5	7591	chr3L	9076914	exon	Tequila +	chr3L	9080710	intron	Tequila +	chr3L	9084505	exon	Tequila +	chr3L_17_9080001	chr3L_9080001	RAL-461
1211	chr3L	9164677	9164729	chr3L	9166164	9166201	hobo	12	1485	4.5	0.0	2.2	3.8	1524	chr3L	9164677	intron	Rdl -	chr3L	9165439	intron	Rdl -	chr3L	9166201	intron	Rdl -	chr3L_12_9165001	chr3L_9165001	RAL-461
1212	chr3L	9219263	9219274	chr3L	9219914	9219943	jockey	7	667	2.5	3.0	2.8	1.8	680	chr3L	9219263	intergenic	not near genes	chr3L	9219603	intergenic	not near genes	chr3L	9219943	intergenic	not near genes	chr3L_7_9215001	chr3L_9215001	RAL-461
1215	chr3L	9443495	9443522	chr3L	9445306	9445306	S-element	4	1802	3.5	0.5	2.0	1.3	1811	chr3L	9443495	intron	CG33926 +	chr3L	9444400	intron	CG33926 +	chr3L	9445306	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-461
1217	chr3L	9501704	9501719	chr3L	9502210	9502225	roo	5	506	1.0	5.5	3.2	1.2	521	chr3L	9501704	intron	path -	chr3L	9501964	intron	path -	chr3L	9502225	intron	path -	chr3L_5_9500001	chr3L_9500001	RAL-461
1220	chr3L	9526471	9526518	chr3L	9528171	9528183	Doc	18	1694	3.5	5.5	4.5	3.3	1712	chr3L	9526471	intergenic	not near genes	chr3L	9527327	intergenic	not near genes	chr3L	9528183	intergenic	not near genes	chr3L_18_9525001	chr3L_9525001	RAL-461
1221	chr3L	9571881	9571926	chr3L	9572249	9572294	jockey	15	367	6.5	6.0	6.2	2.1	413	chr3L	9571881	intron	CG42673 +	chr3L	9572088	intron	CG42673 +	chr3L	9572294	intron	CG42673 +	chr3L_15_9570001	chr3L_9570001	RAL-461
1223	chr3L	9575897	9575922	chr3L	9580995	9581020	jockey	12	5095	5.5	5.0	5.2	1.9	5123	chr3L	9575897	intron	CG42673 +	chr3L	9578458	intron	CG42673 +	chr3L	9581020	intron	CG42673 +	chr3L_12_9575001	chr3L_9575001	RAL-461
1234	chr3L	9929666	9929688	chr3L	9938462	9938489	roo	7	8800	1.5	7.0	4.2	1.3	8823	chr3L	9929666	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938489	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-461
1238	chr3L	10060095	10060117	chr3L	10067694	10067716	17.6	6	7598	8.5	4.5	6.5	0.8	7621	chr3L	10060095	intron	dpr6 +	chr3L	10063906	intron	dpr6 +	chr3L	10067716	intron	dpr6 +	chr3L_6_10060001	chr3L_10060001	RAL-461
1251	chr3L	10414950	10414974	chr3L	10417312	10417330	Doc	8	2374	0.0	4.0	2.0	2.7	2380	chr3L	10414950	intergenic	CG12362 +	chr3L	10416140	intergenic	not near genes	chr3L	10417330	intergenic	not near genes	chr3L_8_10415001	chr3L_10415001	RAL-461
1267	chr3L	11087046	11087090	chr3L	11088855	11088894	S-element	10	1804	2.5	1.5	2.0	3.3	1848	chr3L	11087046	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088894	intron	JIL-1 -	chr3L_10_11085001	chr3L_11085001	RAL-461
1268	chr3L	11105281	11105290	chr3L	11107012	11107021	X-element	4	1731	8.0	1.0	4.5	0.7	1740	chr3L	11105281	intergenic	not near genes	chr3L	11106151	intergenic	not near genes	chr3L	11107021	3` UTR	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-461
1269	chr3L	11105291	11105298	chr3L	11107007	11107029	X-element	4	1723	8.0	1.0	4.5	0.7	1738	chr3L	11105291	intergenic	not near genes	chr3L	11106160	intergenic	not near genes	chr3L	11107029	exon	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-461
1285	chr3L	11723069	11723118	chr3L	11727884	11727903	Doc	16	4810	2.0	7.0	4.5	2.9	4834	chr3L	11723069	3` UTR	Bmcp +	chr3L	11725486	intron	Bmcp +	chr3L	11727903	3` UTR	Bmcp +	chr3L_16_11725001	chr3L_11725001	RAL-461
1294	chr3L	11864532	11864583	chr3L	11865847	11865884	pogo	15	1305	2.0	6.0	4.0	3.0	1352	chr3L	11864532	intron	CG44837 -	chr3L	11865208	intron	CG44837 -	chr3L	11865884	intron	CG44837 -	chr3L_15_11865001	chr3L_11865001	RAL-461
1319	chr3L	12874906	12874952	chr3L	12877218	12877263	jockey	8	2309	3.0	3.0	3.0	2.0	2357	chr3L	12874906	intergenic	not near genes	chr3L	12876084	intergenic	not near genes	chr3L	12877263	intergenic	not near genes	chr3L_8_12875001	chr3L_12875001	RAL-461
1322	chr3L	12919276	12919284	chr3L	12924747	12924748	Rt1c	4	5476	6.5	5.0	5.8	0.6	5472	chr3L	12919276	intergenic	not near genes	chr3L	12922012	intergenic	not near genes	chr3L	12924748	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-461
1336	chr3L	13525139	13525160	chr3L	13532955	13532976	roo	7	7816	7.5	3.5	5.5	1.1	7837	chr3L	13525139	intergenic	not near genes	chr3L	13529058	intergenic	not near genes	chr3L	13532976	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	RAL-461
1337	chr3L	13525163	13525186	chr3L	13532954	13532997	roo	8	7798	5.0	3.0	4.0	1.6	7834	chr3L	13525163	intergenic	not near genes	chr3L	13529080	intergenic	not near genes	chr3L	13532997	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	RAL-461
1342	chr3L	13804536	13804576	chr3L	13822842	13822862	roo	7	18299	4.0	5.5	4.8	1.2	18326	chr3L	13804536	intergenic	not near genes	chr3L	13813699	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_7_13810001	chr3L_13810001	RAL-461
1352	chr3L	14295964	14296008	chr3L	14296466	14296513	roo	8	504	2.0	3.5	2.8	2.1	549	chr3L	14295964	intron	fz +	chr3L	14296238	intron	fz +	chr3L	14296513	intron	fz +	chr3L_8_14295001	chr3L_14295001	RAL-461
1355	chr3L	14468428	14468476	chr3L	14473654	14473702	copia	9	5224	5.0	2.0	3.5	2.0	5274	chr3L	14468428	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473702	intron	bbg -	chr3L_9_14470001	chr3L_14470001	RAL-461
1365	chr3L	14970742	14970765	chr3L	14971072	14971095	F-element	7	330	8.0	4.5	6.2	1.0	353	chr3L	14970742	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971095	intergenic	not near genes	chr3L_7_14970001	chr3L_14970001	RAL-461
1369	chr3L	15085028	15085080	chr3L	15086214	15086266	1360	7	1179	2.5	3.0	2.8	1.8	1238	chr3L	15085028	intron	cp309 -	chr3L	15085647	intron	cp309 -	chr3L	15086266	intron	cp309 -	chr3L_7_15085001	chr3L_15085001	RAL-461
1373	chr3L	15295760	15295786	chr3L	15298623	15298649	gypsy5	10	2861	7.0	7.5	7.2	1.2	2889	chr3L	15295760	intergenic	not near genes	chr3L	15297204	intergenic	not near genes	chr3L	15298649	intergenic	Best4 +	chr3L_10_15295001	chr3L_15295001	RAL-461
1375	chr3L	15423744	15423773	chr3L	15426607	15426618	opus	6	2859	7.5	4.0	5.8	0.9	2874	chr3L	15423744	intergenic	not near genes	chr3L	15425181	intergenic	not near genes	chr3L	15426618	intergenic	not near genes	chr3L_6_15425001	chr3L_15425001	RAL-461
1385	chr3L	16184089	16184135	chr3L	16188927	16188959	X-element	14	4834	3.0	3.5	3.2	3.3	4870	chr3L	16184089	intergenic	not near genes	chr3L	16186524	intergenic	not near genes	chr3L	16188959	intergenic	not near genes	chr3L_14_16185001	chr3L_16185001	RAL-461
1390	chr3L	16443828	16443876	chr3L	16446188	16446231	Doc	12	2357	4.0	4.0	4.0	2.4	2403	chr3L	16443828	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446231	intron,intron	CG33158 +,dsx-c73A -	chr3L_12_16445001	chr3L_16445001	RAL-461
1392	chr3L	16493959	16494013	chr3L	16494496	16494529	jockey	7	529	3.0	5.0	4.0	1.4	570	chr3L	16493959	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494244	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494529	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-461
1395	chr3L	16616498	16616529	chr3L	16621836	16621855	297	10	5333	6.5	3.5	5.0	1.7	5357	chr3L	16616498	3` UTR	Abl -	chr3L	16619176	3` UTR	Abl -	chr3L	16621855	3` UTR	Abl -	chr3L_10_16615001	chr3L_16615001	RAL-461
1397	chr3L	16684000	16684043	chr3L	16689241	16689274	copia	6	5239	3.5	3.5	3.5	1.3	5274	chr3L	16684000	intron,intron	Lasp -,CG43954 -	chr3L	16686637	intron,intron	Lasp -,CG43954 -	chr3L	16689274	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_6_16685001	chr3L_16685001	RAL-461
1406	chr3L	16945716	16945761	chr3L	16954889	16954895	roo	10	9158	2.5	4.5	3.5	2.2	9179	chr3L	16945716	exon	Obp73a +	chr3L	16950306	intergenic	not near genes	chr3L	16954895	5` UTR	Nc73EF +	chr3L_10_16950001	chr3L_16950001	RAL-461
1407	chr3L	17034913	17034967	chr3L	17035121	17035175	G2	10	206	1.0	4.5	2.8	2.6	262	chr3L	17034913	intergenic	not near genes	chr3L	17035044	intergenic	not near genes	chr3L	17035175	intergenic	beg +	chr3L_10_17035001	chr3L_17035001	RAL-461
1408	chr3L	17084985	17085003	chr3L	17094154	17094172	roo	7	9168	13.5	5.5	9.5	0.7	9187	chr3L	17084985	intron	Rbp6 -	chr3L	17089578	intron	Rbp6 -	chr3L	17094172	intron	Rbp6 -	chr3L_7_17085001	chr3L_17085001	RAL-461
1409	chr3L	17085004	17085030	chr3L	17094153	17094199	roo	10	9166	10.5	5.5	8.0	1.1	9195	chr3L	17085004	intron	Rbp6 -	chr3L	17089602	intron	Rbp6 -	chr3L	17094199	intron	Rbp6 -	chr3L_10_17085001	chr3L_17085001	RAL-461
1423	chr3L	17730842	17730878	chr3L	17738182	17738228	mdg1	16	7346	3.5	4.0	3.8	3.3	7386	chr3L	17730842	intron	Ccn +	chr3L	17734535	intron	Ccn +	chr3L	17738228	intron	Ccn +	chr3L_16_17730001	chr3L_17730001	RAL-461
1428	chr3L	17799793	17799842	chr3L	17801600	17801649	S-element	16	1804	3.0	4.0	3.5	3.6	1856	chr3L	17799793	intron	NUCB1 -	chr3L	17800721	intron	NUCB1 -	chr3L	17801649	intron	NUCB1 -	chr3L_16_17800001	chr3L_17800001	RAL-461
1433	chr3L	17918368	17918405	chr3L	17921188	17921216	opus	4	2819	0.5	2.5	1.5	1.6	2848	chr3L	17918368	intergenic	not near genes	chr3L	17919792	intergenic	not near genes	chr3L	17921216	intergenic	not near genes	chr3L_4_17915001	chr3L_17915001	RAL-461
1437	chr3L	18047686	18047733	chr3L	18056763	18056774	roo	18	9074	4.0	4.5	4.2	3.5	9088	chr3L	18047686	intron	Eip75B -	chr3L	18052230	intron	Eip75B -	chr3L	18056774	intron	Eip75B -	chr3L_18_18050001	chr3L_18050001	RAL-461
1466	chr3L	18506140	18506144	chr3L	18509612	18509627	F-element	5	3479	6.0	9.5	7.8	0.6	3487	chr3L	18506140	intergenic	not near genes	chr3L	18507884	intergenic	not near genes	chr3L	18509627	intergenic	not near genes	chr3L_5_18505001	chr3L_18505001	RAL-461
1467	chr3L	18506148	18506161	chr3L	18509611	18509644	F-element	6	3477	4.5	9.5	7.0	0.8	3496	chr3L	18506148	intergenic	not near genes	chr3L	18507896	intergenic	not near genes	chr3L	18509644	intergenic	not near genes	chr3L_6_18505001	chr3L_18505001	RAL-461
1468	chr3L	18528613	18528652	chr3L	18537794	18537833	roo	9	9177	5.5	5.5	5.5	1.4	9220	chr3L	18528613	intergenic	not near genes	chr3L	18533223	intergenic	not near genes	chr3L	18537833	intergenic	not near genes	chr3L_9_18530001	chr3L_18530001	RAL-461
1469	chr3L	18593946	18593977	chr3L	18595936	18595945	Doc	11	1993	3.0	2.5	2.8	2.9	1999	chr3L	18593946	intergenic	term -	chr3L	18594946	intergenic	not near genes	chr3L	18595945	intergenic	CR45389 +	chr3L_11_18590001	chr3L_18590001	RAL-461
1473	chr3L	18710743	18710776	chr3L	18718715	18718748	Stalker2	11	7968	7.5	5.0	6.2	1.5	8005	chr3L	18710743	intergenic	not near genes	chr3L	18714746	intergenic	not near genes	chr3L	18718748	intergenic	not near genes	chr3L_11_18710001	chr3L_18710001	RAL-461
1475	chr3L	18772389	18772434	chr3L	18781090	18781135	roo	13	8697	3.5	0.5	2.0	4.3	8746	chr3L	18772389	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781135	intron	ftz-f1 -	chr3L_13_18775001	chr3L_18775001	RAL-461
1478	chr3L	18833763	18833812	chr3L	18834947	18834966	1360	4	1164	1.5	2.0	1.8	1.4	1203	chr3L	18833763	intron	Indy -	chr3L	18834364	intron	Indy -	chr3L	18834966	intron	Indy -	chr3L_4_18830001	chr3L_18830001	RAL-461
1489	chr3L	19117027	19117073	chr3L	19124492	19124512	mdg1	7	7455	5.0	3.0	4.0	1.4	7485	chr3L	19117027	intron	CG14082 -	chr3L	19120770	intron	CG14082 -	chr3L	19124512	intron	CG14082 -	chr3L_7_19120001	chr3L_19120001	RAL-461
1492	chr3L	19208042	19208075	chr3L	19209436	19209469	Doc	6	1391	2.0	1.0	1.5	2.4	1427	chr3L	19208042	intron	fz2 -	chr3L	19208756	intron	fz2 -	chr3L	19209469	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-461
1503	chr3L	19820298	19820319	chr3L	19827849	19827873	412	5	7562	3.5	4.5	4.0	1.0	7575	chr3L	19820298	intron	Deaf1 +	chr3L	19824086	intron	Deaf1 +	chr3L	19827873	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	RAL-461
1504	chr3L	19848488	19848535	chr3L	19857698	19857715	roo	10	9195	5.5	3.5	4.5	1.8	9227	chr3L	19848488	intron	Papss +	chr3L	19853102	intron	Papss +	chr3L	19857715	intron	Papss +	chr3L_10_19850001	chr3L_19850001	RAL-461
1505	chr3L	19861828	19861845	chr3L	19863636	19863653	S-element	5	1807	2.5	3.0	2.8	1.3	1825	chr3L	19861828	5` UTR	CR45433 +	chr3L	19862740	intergenic	not near genes	chr3L	19863653	intergenic	not near genes	chr3L_5_19860001	chr3L_19860001	RAL-461
1509	chr3L	20113642	20113689	chr3L	20122919	20122944	roo	22	9271	6.0	8.0	7.0	2.8	9302	chr3L	20113642	intergenic	not near genes	chr3L	20118293	intergenic	not near genes	chr3L	20122944	intergenic	not near genes	chr3L_22_20115001	chr3L_20115001	RAL-461
1514	chr3L	20257314	20257342	chr3L	20258454	20258477	pogo	5	1139	8.0	4.0	6.0	0.7	1163	chr3L	20257314	intron	rdgC +	chr3L	20257896	intron	rdgC +	chr3L	20258477	intron	rdgC +	chr3L_5_20255001	chr3L_20255001	RAL-461
1515	chr3L	20257348	20257363	chr3L	20258452	20258503	pogo	8	1122	4.0	3.0	3.5	1.8	1155	chr3L	20257348	intron	rdgC +	chr3L	20257926	intron	rdgC +	chr3L	20258503	intron	rdgC +	chr3L_8_20255001	chr3L_20255001	RAL-461
1522	chr3L	20476737	20476783	chr3L	20484356	20484402	springer	19	7614	5.0	6.5	5.8	2.8	7665	chr3L	20476737	3` UTR	isoQC +	chr3L	20480570	intergenic	not near genes	chr3L	20484402	3` UTR	ZnT77C -	chr3L_19_20480001	chr3L_20480001	RAL-461
1528	chr3L	20821277	20821296	chr3L	20824766	20824785	NOF	5	3489	5.5	6.5	6.0	0.7	3508	chr3L	20821277	intron	Pka-R1 +	chr3L	20823031	intron	Pka-R1 +	chr3L	20824785	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	RAL-461
1532	chr3L	21014900	21014946	chr3L	21023401	21023447	Tirant	6	8490	2.0	1.0	1.5	2.4	8547	chr3L	21014900	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023447	intron	skd -	chr3L_6_21015001	chr3L_21015001	RAL-461
1536	chr3L	21151844	21151896	chr3L	21156948	21157000	flea	23	5104	5.5	4.5	5.0	3.8	5156	chr3L	21151844	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21157000	intron	Ac78C -	chr3L_23_21150001	chr3L_21150001	RAL-461
1538	chr3L	21306128	21306180	chr3L	21315307	21315322	roo	13	9170	3.0	3.0	3.0	3.2	9194	chr3L	21306128	3` UTR	CG7632 +	chr3L	21310725	intron	Pc -	chr3L	21315322	3` UTR	Pc -	chr3L_13_21310001	chr3L_21310001	RAL-461
1539	chr3L	21361710	21361751	chr3L	21362684	21362725	G2	12	973	3.5	4.0	3.8	2.5	1015	chr3L	21361710	intergenic	CG32440 +	chr3L	21362218	intergenic	not near genes	chr3L	21362725	intergenic	not near genes	chr3L_12_21360001	chr3L_21360001	RAL-461
1540	chr3L	21372704	21372747	chr3L	21379227	21379249	McClintock	9	6522	3.5	2.0	2.8	2.4	6545	chr3L	21372704	intergenic	not near genes	chr3L	21375976	intergenic	not near genes	chr3L	21379249	intergenic	not near genes	chr3L_9_21375001	chr3L_21375001	RAL-461
1543	chr3L	21458324	21458354	chr3L	21458439	21458443	INE-1	4	103	8.0	3.0	5.5	0.6	119	chr3L	21458324	intergenic	not near genes	chr3L	21458384	intergenic	not near genes	chr3L	21458443	intergenic	not near genes	chr3L_4_21455001	chr3L_21455001	RAL-461
1544	chr3L	21501156	21501168	chr3L	21501270	21501282	1360	7	114	5.0	11.0	8.0	0.8	126	chr3L	21501156	intron	Glg1 -	chr3L	21501219	intron	Glg1 -	chr3L	21501282	intron	Glg1 -	chr3L_7_21500001	chr3L_21500001	RAL-461
1553	chr3L	22099656	22099672	chr3L	22105862	22105876	3S18	6	6204	9.0	5.5	7.2	0.7	6220	chr3L	22099656	intergenic	not near genes	chr3L	22102766	intergenic	not near genes	chr3L	22105876	intergenic	not near genes	chr3L_6_22100001	chr3L_22100001	RAL-461
1554	chr3L	22099674	22099703	chr3L	22105861	22105909	3S18	14	6202	5.0	5.5	5.2	2.3	6235	chr3L	22099674	intergenic	not near genes	chr3L	22102792	intergenic	not near genes	chr3L	22105909	intergenic	not near genes	chr3L_14_22100001	chr3L_22100001	RAL-461
1560	chr3L	22555749	22555802	chr3L	22563239	22563282	blood	13	7484	3.5	0.5	2.0	4.3	7533	chr3L	22555749	intergenic	not near genes	chr3L	22559516	intergenic	not near genes	chr3L	22563282	intergenic	not near genes	chr3L_13_22555001	chr3L_22555001	RAL-461
1561	chr3L	22617169	22617223	chr3L	22624641	22624652	blood	19	7463	2.0	5.5	3.8	4.0	7483	chr3L	22617169	intron	CG14459 -	chr3L	22620910	intron	CG14459 -	chr3L	22624652	intron	CG14459 -	chr3L_19_22620001	chr3L_22620001	RAL-461
1562	chr3L	22761370	22761414	chr3L	22766824	22766858	Ivk	11	5449	7.0	8.5	7.8	1.2	5488	chr3L	22761370	intron	SPoCk +	chr3L	22764114	intron	SPoCk +	chr3L	22766858	intron	SPoCk +	chr3L_11_22760001	chr3L_22760001	RAL-461
1565	chr3L	22865973	22866009	chr3L	22867122	22867162	Doc	10	1150	5.0	6.0	5.5	1.5	1189	chr3L	22865973	intron	CG33170 +	chr3L	22866568	intron	CG33170 +	chr3L	22867162	intron	CG33170 +	chr3L_10_22865001	chr3L_22865001	RAL-461
1575	chr3L	22989863	22989894	chr3L	22996837	22996868	297	12	6979	3.5	4.5	4.0	2.4	7005	chr3L	22989863	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996868	intergenic	not near genes	chr3L_12_22990001	chr3L_22990001	RAL-461
1580	chr3L	24012396	24012432	chr3L	24020752	24020773	roo	5	8349	5.0	4.5	4.8	0.9	8377	chr3L	24012396	intergenic	not near genes	chr3L	24016584	intergenic	not near genes	chr3L	24020773	intergenic	not near genes	chr3L_5_24015001	chr3L_24015001	RAL-461
1582	chr3L	24168784	24168821	chr3L	24176119	24176159	ZAM	4	7339	1.5	0.5	1.0	2.0	7375	chr3L	24168784	intron	Snap25 +	chr3L	24172472	intron	Snap25 +	chr3L	24176159	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-461
1583	chr3L	24791886	24791915	chr3L	24796678	24796714	Doc	5	4798	5.0	3.0	4.0	1.0	4828	chr3L	24791886	intergenic	not near genes	chr3L	24794300	intergenic	not near genes	chr3L	24796714	intergenic	not near genes	chr3L_5_24790001	chr3L_24790001	RAL-461
1594	chr3R	4206060	4206097	chr3R	4211655	4211692	mdg3	6	5595	2.5	4.5	3.5	1.3	5632	chr3R	4206060	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211692	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RAL-461
1595	chr3R	4366747	4366771	chr3R	4375141	4375174	roo	12	8398	8.0	6.5	7.2	1.5	8427	chr3R	4366747	3` UTR	CG1090 +	chr3R	4370960	intergenic	not near genes	chr3R	4375174	5` UTR	CR44922 +	chr3R_12_4370001	chr3R_4370001	RAL-461
1596	chr3R	4366775	4366789	chr3R	4375140	4375192	roo	8	8388	4.0	6.0	5.0	1.3	8417	chr3R	4366775	3` UTR	CG1090 +	chr3R	4370984	intergenic	not near genes	chr3R	4375192	5` UTR	CR44922 +	chr3R_8_4370001	chr3R_4370001	RAL-461
1597	chr3R	4408417	4408445	chr3R	4412715	4412726	Juan	7	4309	3.5	5.0	4.2	1.3	4309	chr3R	4408417	intron	CG32944 -	chr3R	4410572	intron	CG32944 -	chr3R	4412726	intron	CG32944 -	chr3R_7_4410001	chr3R_4410001	RAL-461
1600	chr3R	4609531	4609580	chr3R	4610712	4610748	1360	9	1182	4.0	5.0	4.5	1.6	1217	chr3R	4609531	intergenic	not near genes	chr3R	4610140	intergenic	not near genes	chr3R	4610748	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-461
1603	chr3R	4753228	4753262	chr3R	4757551	4757585	F-element	7	4319	6.5	4.0	5.2	1.1	4357	chr3R	4753228	intron,intron	atms +,CG44098 -	chr3R	4755406	intron,intron	atms +,CG44098 -	chr3R	4757585	intron,exon	atms +,CG44098 -	chr3R_7_4755001	chr3R_4755001	RAL-461
1610	chr3R	5045828	5045865	chr3R	5052950	5052987	HMS-Beagle	8	7121	4.0	7.0	5.5	1.2	7159	chr3R	5045828	3` UTR	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052987	intergenic	CR45588 -	chr3R_8_5045001	chr3R_5045001	RAL-461
1611	chr3R	5067960	5068013	chr3R	5073497	5073550	mdg3	33	5534	5.0	5.5	5.2	5.3	5590	chr3R	5067960	intergenic	not near genes	chr3R	5070755	intergenic	not near genes	chr3R	5073550	intergenic	not near genes	chr3R_33_5070001	chr3R_5070001	RAL-461
1616	chr3R	5338392	5338424	chr3R	5343577	5343594	Rt1c	7	5189	9.0	4.5	6.8	0.9	5202	chr3R	5338392	intron	mtd -	chr3R	5340993	intron	mtd -	chr3R	5343594	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-461
1620	chr3R	5445942	5445993	chr3R	5452422	5452472	Burdock	15	6477	3.0	2.5	2.8	3.9	6530	chr3R	5445942	intron	CG14669 +	chr3R	5449207	intron	CG14669 +	chr3R	5452472	intron	CG14669 +	chr3R_15_5445001	chr3R_5445001	RAL-461
1625	chr3R	5746002	5746021	chr3R	5746263	5746282	pogo	4	261	4.5	6.0	5.2	0.6	280	chr3R	5746002	3` UTR	Madm +	chr3R	5746142	3` UTR	Madm +	chr3R	5746282	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-461
1626	chr3R	5746026	5746046	chr3R	5746259	5746292	pogo	6	251	2.0	6.0	4.0	1.2	266	chr3R	5746026	3` UTR	Madm +	chr3R	5746159	3` UTR	Madm +	chr3R	5746292	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-461
1627	chr3R	5747003	5747032	chr3R	5753204	5753223	diver	9	6208	10.0	4.5	7.2	1.1	6220	chr3R	5747003	intergenic	Madm +	chr3R	5750113	intergenic	not near genes	chr3R	5753223	intergenic	CG2091 -	chr3R_9_5750001	chr3R_5750001	RAL-461
1628	chr3R	5809090	5809142	chr3R	5809360	5809407	pogo	8	266	2.5	4.0	3.2	1.9	317	chr3R	5809090	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809407	3` UTR	CG11000 +	chr3R_8_5805001	chr3R_5805001	RAL-461
1629	chr3R	5822369	5822407	chr3R	5823544	5823571	1360	11	1180	7.0	4.5	5.8	1.6	1202	chr3R	5822369	3` UTR	CG2023 -	chr3R	5822970	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_11_5820001	chr3R_5820001	RAL-461
1630	chr3R	5927556	5927585	chr3R	5927810	5927844	pogo	11	255	5.5	8.0	6.8	1.4	288	chr3R	5927556	intron	CG34113 -	chr3R	5927700	intron	CG34113 -	chr3R	5927844	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-461
1637	chr3R	6121165	6121183	chr3R	6121403	6121421	BS	4	238	0.0	8.5	4.2	0.8	256	chr3R	6121165	intergenic	not near genes	chr3R	6121293	intergenic	not near genes	chr3R	6121421	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	RAL-461
1638	chr3R	6158505	6158536	chr3R	6167108	6167118	Tirant	5	8599	2.0	4.5	3.2	1.2	8613	chr3R	6158505	intergenic	not near genes	chr3R	6162812	intergenic	not near genes	chr3R	6167118	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	RAL-461
1639	chr3R	6175162	6175207	chr3R	6182454	6182458	HMS-Beagle2	14	7284	4.5	2.0	3.2	3.3	7296	chr3R	6175162	intergenic	Osi1 +	chr3R	6178810	intron	CR45194 +	chr3R	6182458	intergenic	CR45194 +	chr3R_14_6175001	chr3R_6175001	RAL-461
1648	chr3R	6510028	6510051	chr3R	6515104	6515152	jockey	8	5096	7.5	3.0	5.2	1.3	5124	chr3R	6510028	intergenic	not near genes	chr3R	6512590	intergenic	not near genes	chr3R	6515152	intergenic	not near genes	chr3R_8_6510001	chr3R_6510001	RAL-461
1671	chr3R	7694559	7694610	chr3R	7713640	7713691	invader3	22	19080	4.0	3.0	3.5	4.9	19132	chr3R	7694559	3` UTR	Nlg1 +	chr3R	7704125	intergenic	not near genes	chr3R	7713691	intergenic	not near genes	chr3R_22_7700001	chr3R_7700001	RAL-461
1672	chr3R	7729459	7729498	chr3R	7737407	7737453	Stalker2	11	7956	4.0	3.5	3.8	2.3	7994	chr3R	7729459	intergenic	not near genes	chr3R	7733456	intergenic	not near genes	chr3R	7737453	intergenic	not near genes	chr3R_11_7730001	chr3R_7730001	RAL-461
1676	chr3R	7973307	7973314	chr3R	7974389	7974396	1360	5	1082	6.5	6.0	6.2	0.7	1089	chr3R	7973307	intergenic	not near genes	chr3R	7973852	intergenic	not near genes	chr3R	7974396	intergenic	CD98hc -	chr3R_5_7970001	chr3R_7970001	RAL-461
1679	chr3R	8090548	8090565	chr3R	8094045	8094061	297	7	3495	3.5	6.0	4.8	1.2	3513	chr3R	8090548	intergenic	CR44330 +	chr3R	8092304	intergenic	not near genes	chr3R	8094061	intergenic	CG7900 +	chr3R_7_8090001	chr3R_8090001	RAL-461
1680	chr3R	8094394	8094413	chr3R	8099719	8099728	Transpac	6	5322	5.0	4.5	4.8	1.0	5334	chr3R	8094394	intron	CG7900 +	chr3R	8097061	intron	CG7900 +	chr3R	8099728	intron	CG7900 +	chr3R_6_8095001	chr3R_8095001	RAL-461
1684	chr3R	8403010	8403033	chr3R	8412178	8412214	roo	5	9181	4.5	2.5	3.5	1.1	9204	chr3R	8403010	intron	CG45263 -	chr3R	8407612	intron	CG45263 -	chr3R	8412214	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-461
1687	chr3R	8570489	8570506	chr3R	8575133	8575155	HMS-Beagle	8	4652	3.5	8.0	5.8	1.2	4666	chr3R	8570489	intergenic	not near genes	chr3R	8572822	intergenic	not near genes	chr3R	8575155	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	RAL-461
1688	chr3R	8601756	8601798	chr3R	8610929	8610950	roo	4	9158	5.5	4.0	4.8	0.7	9194	chr3R	8601756	intron	5-HT2B +	chr3R	8606353	intron	5-HT2B +	chr3R	8610950	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-461
1692	chr3R	8707335	8707375	chr3R	8709796	8709810	jockey	7	2453	0.5	3.5	2.0	2.3	2475	chr3R	8707335	intergenic	not near genes	chr3R	8708572	intergenic	not near genes	chr3R	8709810	intergenic	not near genes	chr3R_7_8705001	chr3R_8705001	RAL-461
1701	chr3R	9278770	9278813	chr3R	9284041	9284069	Rt1a	13	5268	0.5	3.0	1.8	4.6	5299	chr3R	9278770	intergenic	not near genes	chr3R	9281420	intergenic	not near genes	chr3R	9284069	intergenic	not near genes	chr3R_13_9280001	chr3R_9280001	RAL-461
1702	chr3R	9304515	9304560	chr3R	9311817	9311822	Stalker4	5	7295	7.5	1.5	4.5	0.9	7307	chr3R	9304515	intron	CG8861 -	chr3R	9308168	intron	CG8861 -	chr3R	9311822	intron	CG8861 -	chr3R_5_9305001	chr3R_9305001	RAL-461
1703	chr3R	9319562	9319600	chr3R	9320017	9320055	jockey	10	453	9.0	5.0	7.0	1.2	493	chr3R	9319562	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320055	intron	CG8861 -	chr3R_10_9315001	chr3R_9315001	RAL-461
1707	chr3R	9361807	9361841	chr3R	9362057	9362102	pogo	12	258	3.5	6.0	4.8	2.1	295	chr3R	9361807	3` UTR	CG45050 +	chr3R	9361954	3` UTR	CG45050 +	chr3R	9362102	3` UTR	CG45050 +	chr3R_12_9360001	chr3R_9360001	RAL-461
1717	chr3R	10231775	10231813	chr3R	10237372	10237384	mdg3	10	5594	4.0	7.0	5.5	1.5	5609	chr3R	10231775	intron	CG42795 +	chr3R	10234580	intron	CG42795 +	chr3R	10237384	intron	CG42795 +	chr3R_10_10230001	chr3R_10230001	RAL-461
1718	chr3R	10255362	10255382	chr3R	10260822	10260840	I-element	5	5460	8.5	2.5	5.5	0.8	5478	chr3R	10255362	3` UTR	Sirt6 -	chr3R	10258101	intron	Sirt6 -	chr3R	10260840	exon	Sirt6 -	chr3R_5_10255001	chr3R_10255001	RAL-461
1741	chr3R	11379217	11379265	chr3R	11388392	11388420	roo	12	9169	6.0	3.5	4.8	2.1	9203	chr3R	11379217	intron	pros +	chr3R	11383818	intron	pros +	chr3R	11388420	intron	pros +	chr3R_12_11380001	chr3R_11380001	RAL-461
1750	chr3R	11841047	11841085	chr3R	11846253	11846274	BS	4	5194	2.0	2.5	2.2	1.2	5227	chr3R	11841047	intron	CG6959 -	chr3R	11843660	intron	CG6959 -	chr3R	11846274	intron	CG6959 -	chr3R_4_11840001	chr3R_11840001	RAL-461
1754	chr3R	12022879	12022912	chr3R	12025076	12025108	pogo	7	2196	3.5	6.0	4.8	1.2	2229	chr3R	12022879	intergenic	not near genes	chr3R	12023994	intergenic	not near genes	chr3R	12025108	intergenic	not near genes	chr3R_7_12020001	chr3R_12020001	RAL-461
1765	chr3R	12864551	12864593	chr3R	12865046	12865098	roo	8	503	0.5	1.5	1.0	4.0	547	chr3R	12864551	intergenic	not near genes	chr3R	12864824	intergenic	not near genes	chr3R	12865098	intergenic	not near genes	chr3R_8_12860001	chr3R_12860001	RAL-461
1767	chr3R	12920182	12920184	chr3R	12925357	12925400	copia	4	5196	1.0	4.0	2.5	1.1	5218	chr3R	12920182	intron	beat-Vb +	chr3R	12922791	intron	beat-Vb +	chr3R	12925400	intron	beat-Vb +	chr3R_4_12920001	chr3R_12920001	RAL-461
1782	chr3R	13314101	13314133	chr3R	13318884	13318890	Doc	11	4795	3.0	6.5	4.8	1.9	4789	chr3R	13314101	intergenic	not near genes	chr3R	13316496	intergenic	not near genes	chr3R	13318890	intergenic	CG45080 -	chr3R_11_13315001	chr3R_13315001	RAL-461
1790	chr3R	13517214	13517251	chr3R	13520046	13520088	jockey	4	2836	1.5	0.0	0.8	2.2	2874	chr3R	13517214	intergenic	not near genes	chr3R	13518651	intergenic	not near genes	chr3R	13520088	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	RAL-461
1802	chr3R	14021652	14021657	chr3R	14023487	14023494	S-element	4	1836	6.5	7.0	6.8	0.5	1842	chr3R	14021652	intron	rdx -	chr3R	14022573	intron	rdx -	chr3R	14023494	intron	rdx -	chr3R_4_14020001	chr3R_14020001	RAL-461
1803	chr3R	14021658	14021677	chr3R	14023474	14023514	S-element	8	1834	5.0	4.0	4.5	1.5	1856	chr3R	14021658	intron	rdx -	chr3R	14022586	intron	rdx -	chr3R	14023514	intron	rdx -	chr3R_8_14020001	chr3R_14020001	RAL-461
1806	chr3R	14180803	14180807	chr3R	14185588	14185592	F-element	4	4785	6.5	0.0	3.2	1.0	4789	chr3R	14180803	intron	Dop1R1 -	chr3R	14183198	intron	Dop1R1 -	chr3R	14185592	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	RAL-461
1807	chr3R	14180810	14180828	chr3R	14185583	14185584	F-element	6	4772	4.0	0.0	2.0	2.0	4774	chr3R	14180810	intron	Dop1R1 -	chr3R	14183197	intron	Dop1R1 -	chr3R	14185584	intron	Dop1R1 -	chr3R_6_14180001	chr3R_14180001	RAL-461
1808	chr3R	14194453	14194459	chr3R	14203598	14203604	roo	4	9145	3.5	2.5	3.0	1.0	9151	chr3R	14194453	intron	Dop1R1 -	chr3R	14199028	intron	Dop1R1 -	chr3R	14203604	intron	Dop1R1 -	chr3R_4_14195001	chr3R_14195001	RAL-461
1809	chr3R	14246375	14246414	chr3R	14247891	14247930	jockey	4	1507	1.5	4.0	2.8	1.1	1555	chr3R	14246375	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247930	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-461
1818	chr3R	15041409	15041453	chr3R	15045197	15045241	Doc	13	3785	5.0	3.5	4.2	2.5	3832	chr3R	15041409	intergenic	not near genes	chr3R	15043325	intergenic	not near genes	chr3R	15045241	intergenic	not near genes	chr3R_13_15040001	chr3R_15040001	RAL-461
1819	chr3R	15079788	15079839	chr3R	15080049	15080100	pogo	6	261	6.5	3.0	4.8	1.0	312	chr3R	15079788	3` UTR	CG6966 -	chr3R	15079944	3` UTR	CG6966 -	chr3R	15080100	3` UTR	CG6966 -	chr3R_6_15075001	chr3R_15075001	RAL-461
1820	chr3R	15102483	15102521	chr3R	15109758	15109796	412	6	7270	5.5	6.0	5.8	0.9	7313	chr3R	15102483	intron	CG42788 -	chr3R	15106140	intron	CG42788 -	chr3R	15109796	intron	CG42788 -	chr3R_6_15105001	chr3R_15105001	RAL-461
1823	chr3R	15132045	15132062	chr3R	15135125	15135141	Juan	5	3080	8.0	6.5	7.2	0.6	3096	chr3R	15132045	intergenic	CG42788 -	chr3R	15133593	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_5_15130001	chr3R_15130001	RAL-461
1824	chr3R	15132066	15132086	chr3R	15135116	15135166	Juan	5	3069	4.0	5.0	4.5	0.9	3100	chr3R	15132066	intergenic	CG42788 -	chr3R	15133616	intergenic	not near genes	chr3R	15135166	3` UTR	CG6912 -	chr3R_5_15130001	chr3R_15130001	RAL-461
1826	chr3R	15162551	15162570	chr3R	15167322	15167357	F-element	9	4779	8.0	7.5	7.8	1.0	4806	chr3R	15162551	intron	Gyc88E +	chr3R	15164954	intron	Gyc88E +	chr3R	15167357	intron	Gyc88E +	chr3R_9_15160001	chr3R_15160001	RAL-461
1834	chr3R	15601159	15601195	chr3R	15608690	15608713	412	7	7535	3.5	5.5	4.5	1.3	7554	chr3R	15601159	intergenic	not near genes	chr3R	15604936	intergenic	not near genes	chr3R	15608713	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-461
1841	chr3R	15735222	15735237	chr3R	15739962	15739977	F-element	4	4740	2.0	3.0	2.5	1.1	4755	chr3R	15735222	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739977	intergenic	not near genes	chr3R_4_15735001	chr3R_15735001	RAL-461
1847	chr3R	16189396	16189442	chr3R	16189814	16189850	invader4	20	421	2.5	4.0	3.2	4.8	454	chr3R	16189396	intron	sra +	chr3R	16189623	intron	sra +	chr3R	16189850	intron	sra +	chr3R_20_16185001	chr3R_16185001	RAL-461
1859	chr3R	17294658	17294696	chr3R	17295106	17295142	BS	9	443	1.5	2.5	2.0	3.0	484	chr3R	17294658	intergenic	not near genes	chr3R	17294900	intergenic	not near genes	chr3R	17295142	intergenic	not near genes	chr3R_9_17290001	chr3R_17290001	RAL-461
1860	chr3R	17346680	17346721	chr3R	17348263	17348304	F-element	10	1581	4.0	2.5	3.2	2.4	1624	chr3R	17346680	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348304	intron	beat-IIa -	chr3R_10_17345001	chr3R_17345001	RAL-461
1868	chr3R	17638299	17638345	chr3R	17638804	17638851	roo	19	501	6.0	6.0	6.0	2.7	552	chr3R	17638299	intron	CG43175 +	chr3R	17638575	intron	CG43175 +	chr3R	17638851	intron,intron	CG43175 +,CR45222 +	chr3R_19_17635001	chr3R_17635001	RAL-461
1886	chr3R	18606490	18606507	chr3R	18610741	18610749	F-element	4	4249	7.0	6.5	6.8	0.5	4259	chr3R	18606490	intron,intron	qin +,CG14304 -	chr3R	18608620	intron,intron	qin +,CG14304 -	chr3R	18610749	intron,intron	qin +,CG14304 -	chr3R_4_18605001	chr3R_18605001	RAL-461
1887	chr3R	18606508	18606524	chr3R	18610735	18610776	F-element	6	4245	4.5	4.0	4.2	1.2	4268	chr3R	18606508	intron,intron	qin +,CG14304 -	chr3R	18608642	intron,intron	qin +,CG14304 -	chr3R	18610776	intron,intron	qin +,CG14304 -	chr3R_6_18605001	chr3R_18605001	RAL-461
1918	chr3R	20109517	20109562	chr3R	20114741	20114787	copia	5	5225	3.5	3.5	3.5	1.1	5270	chr3R	20109517	intergenic	not near genes	chr3R	20112152	intergenic	not near genes	chr3R	20114787	intergenic	CG10887 +	chr3R_5_20110001	chr3R_20110001	RAL-461
1919	chr3R	20156679	20156716	chr3R	20165869	20165906	roo	6	9190	4.0	3.5	3.8	1.2	9227	chr3R	20156679	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165906	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-461
1924	chr3R	20245269	20245304	chr3R	20248886	20248923	F-element	11	3624	3.0	4.0	3.5	2.4	3654	chr3R	20245269	3` UTR	Nlg4 +	chr3R	20247096	intergenic	not near genes	chr3R	20248923	intergenic	not near genes	chr3R_11_20245001	chr3R_20245001	RAL-461
1927	chr3R	20266494	20266542	chr3R	20272985	20273033	Burdock	14	6490	0.5	4.0	2.2	4.4	6539	chr3R	20266494	intron	cic +	chr3R	20269764	intron	cic +	chr3R	20273033	intron	cic +	chr3R_14_20265001	chr3R_20265001	RAL-461
1929	chr3R	20330986	20331029	chr3R	20331492	20331535	roo	16	506	2.5	7.5	5.0	2.7	549	chr3R	20330986	intergenic	Sirt2 +	chr3R	20331260	intergenic	Sirt2 +	chr3R	20331535	intergenic	not near genes	chr3R_16_20330001	chr3R_20330001	RAL-461
1931	chr3R	20512995	20513035	chr3R	20515705	20515758	opus	8	2717	4.0	3.5	3.8	1.7	2763	chr3R	20512995	intergenic	not near genes	chr3R	20514376	intergenic	not near genes	chr3R	20515758	intergenic	not near genes	chr3R_8_20510001	chr3R_20510001	RAL-461
1964	chr3R	21761102	21761136	chr3R	21768514	21768547	mdg1	5	7409	2.5	2.0	2.2	1.6	7445	chr3R	21761102	exon	CG42335 +	chr3R	21764824	intron	CG42335 +	chr3R	21768547	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-461
1975	chr3R	22234681	22234715	chr3R	22236003	22236036	pogo	11	1331	2.5	5.0	3.8	2.3	1355	chr3R	22234681	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236036	intron	SKIP +	chr3R_11_22235001	chr3R_22235001	RAL-461
1976	chr3R	22239471	22239522	chr3R	22248551	22248590	roo	9	9071	5.0	0.5	2.8	2.4	9119	chr3R	22239471	intron	SKIP +	chr3R	22244030	intron	SKIP +	chr3R	22248590	intron	SKIP +	chr3R_9_22240001	chr3R_22240001	RAL-461
1979	chr3R	22450546	22450573	chr3R	22453186	22453229	NOF	9	2647	3.0	4.0	3.5	2.0	2683	chr3R	22450546	intron	CG34376 +	chr3R	22451888	intron	CG34376 +	chr3R	22453229	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-461
1990	chr3R	22881183	22881232	chr3R	22884906	22884957	Doc	8	3725	4.5	3.0	3.8	1.7	3774	chr3R	22881183	intergenic	not near genes	chr3R	22883070	intergenic	not near genes	chr3R	22884957	intergenic	not near genes	chr3R_8_22880001	chr3R_22880001	RAL-461
1999	chr3R	23558383	23558427	chr3R	23560184	23560203	Bari1	10	1795	3.5	3.0	3.2	2.4	1820	chr3R	23558383	intron	beat-IV +	chr3R	23559293	intron	beat-IV +	chr3R	23560203	intron	beat-IV +	chr3R_10_23555001	chr3R_23555001	RAL-461
2004	chr3R	23835396	23835415	chr3R	23844566	23844573	roo	4	9167	4.0	0.0	2.0	1.3	9177	chr3R	23835396	intron	CG34355 +	chr3R	23839984	intron	CG34355 +	chr3R	23844573	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	RAL-461
2005	chr3R	23851068	23851086	chr3R	23858755	23858768	opus	8	7686	3.0	10.0	6.5	1.1	7700	chr3R	23851068	3` UTR	CG34355 +	chr3R	23854918	intergenic	not near genes	chr3R	23858768	intergenic	not near genes	chr3R_8_23850001	chr3R_23850001	RAL-461
2012	chr3R	24076898	24076942	chr3R	24078385	24078429	hobo	9	1483	3.5	5.5	4.5	1.6	1531	chr3R	24076898	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078429	intron	4EHP -	chr3R_9_24075001	chr3R_24075001	RAL-461
2015	chr3R	24207210	24207230	chr3R	24212301	24212326	flea	7	5089	4.5	6.5	5.5	1.1	5116	chr3R	24207210	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212326	intron	twin -	chr3R_7_24205001	chr3R_24205001	RAL-461
2021	chr3R	24493281	24493308	chr3R	24493529	24493556	BS	7	248	7.5	7.0	7.2	0.9	275	chr3R	24493281	intergenic	not near genes	chr3R	24493418	intergenic	not near genes	chr3R	24493556	intergenic	not near genes	chr3R_7_24490001	chr3R_24490001	RAL-461
2026	chr3R	24927113	24927139	chr3R	24931924	24931950	Doc	9	4810	8.0	1.5	4.8	1.6	4837	chr3R	24927113	intergenic	Trf4-2 +	chr3R	24929532	intergenic	not near genes	chr3R	24931950	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	RAL-461
2027	chr3R	24927142	24927149	chr3R	24931917	24931945	Doc	4	4784	7.0	1.5	4.2	0.8	4803	chr3R	24927142	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931945	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-461
2043	chr3R	25725807	25725860	chr3R	25734987	25735040	roo	21	9177	4.5	8.0	6.2	2.9	9233	chr3R	25725807	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735040	intron	LpR2 -	chr3R_21_25730001	chr3R_25730001	RAL-461
2055	chr3R	26376322	26376358	chr3R	26385485	26385503	roo	7	9166	2.5	0.5	1.5	2.8	9181	chr3R	26376322	intergenic	not near genes	chr3R	26380912	intergenic	not near genes	chr3R	26385503	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-461
2058	chr3R	26510494	26510535	chr3R	26519575	26519590	roo	8	9075	4.5	7.0	5.8	1.2	9096	chr3R	26510494	intron	plum -	chr3R	26515042	intron	plum -	chr3R	26519590	intron,5` UTR	plum -,CR45226 +	chr3R_8_26515001	chr3R_26515001	RAL-461
2061	chr3R	26558337	26558350	chr3R	26565647	26565682	Stalker4	6	7323	2.5	3.5	3.0	1.5	7345	chr3R	26558337	intron	scrib +	chr3R	26562010	intron	scrib +	chr3R	26565682	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-461
2063	chr3R	26642740	26642757	chr3R	26643123	26643171	jockey	7	409	4.5	4.5	4.5	1.3	431	chr3R	26642740	intergenic	not near genes	chr3R	26642956	intergenic	not near genes	chr3R	26643171	intergenic	not near genes	chr3R_7_26640001	chr3R_26640001	RAL-461
2065	chr3R	26810544	26810569	chr3R	26811036	26811052	roo	11	502	6.0	1.0	3.5	2.4	508	chr3R	26810544	intron	Tl +	chr3R	26810798	intron	Tl +	chr3R	26811052	intron	Tl +	chr3R_11_26810001	chr3R_26810001	RAL-461
2067	chr3R	27007390	27007417	chr3R	27016545	27016572	roo	6	9150	7.0	5.5	6.2	0.8	9182	chr3R	27007390	intron	RYa-R +	chr3R	27011981	intron	RYa-R +	chr3R	27016572	intron	RYa-R +	chr3R_6_27010001	chr3R_27010001	RAL-461
2068	chr3R	27007418	27007424	chr3R	27016537	27016558	roo	5	9143	5.0	4.5	4.8	0.9	9140	chr3R	27007418	intron	RYa-R +	chr3R	27011988	intron	RYa-R +	chr3R	27016558	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-461
2073	chr3R	27140511	27140534	chr3R	27148135	27148159	412	4	7623	1.5	6.5	4.0	0.8	7648	chr3R	27140511	intron	CG6051 -	chr3R	27144335	intron	CG6051 -	chr3R	27148159	intron	CG6051 -	chr3R_4_27140001	chr3R_27140001	RAL-461
2076	chr3R	27342777	27342826	chr3R	27351378	27351427	Tirant	4	8601	1.5	5.0	3.2	1.0	8650	chr3R	27342777	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351427	intron	CG42534 +	chr3R_4_27345001	chr3R_27345001	RAL-461
2080	chr3R	27521137	27521181	chr3R	27530366	27530410	roo	13	9224	6.0	6.5	6.2	1.8	9273	chr3R	27521137	intron	CG12885 +	chr3R	27525774	intron	CG12885 +	chr3R	27530410	intron	CG12885 +	chr3R_13_27525001	chr3R_27525001	RAL-461
2084	chr3R	27725587	27725599	chr3R	27731045	27731048	I-element	4	5458	2.0	0.5	1.2	1.8	5461	chr3R	27725587	intergenic	not near genes	chr3R	27728318	intergenic	not near genes	chr3R	27731048	intergenic	not near genes	chr3R_4_27725001	chr3R_27725001	RAL-461
2089	chr3R	27856747	27856792	chr3R	27858250	27858264	hopper2	18	1499	5.0	4.0	4.5	3.3	1517	chr3R	27856747	intron	CG34353 -	chr3R	27857506	intron	CG34353 -	chr3R	27858264	intron	CG34353 -	chr3R_18_27855001	chr3R_27855001	RAL-461
2091	chr3R	27862937	27862985	chr3R	27868262	27868310	Transpac	11	5315	2.0	4.5	3.2	2.6	5373	chr3R	27862937	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868310	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	RAL-461
2092	chr3R	27875688	27875730	chr3R	27882763	27882797	297	15	7072	3.0	5.5	4.2	2.9	7109	chr3R	27875688	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882797	intron	CG34353 -	chr3R_15_27875001	chr3R_27875001	RAL-461
2094	chr3R	28068477	28068532	chr3R	28073934	28073975	I-element	6	5458	0.5	2.5	1.5	2.4	5498	chr3R	28068477	intron	CG34362 +	chr3R	28071226	intron	CG34362 +	chr3R	28073975	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-461
2095	chr3R	28173654	28173683	chr3R	28181104	28181112	mdg1	7	7446	5.0	5.5	5.2	1.1	7458	chr3R	28173654	intron	CG34354 +	chr3R	28177383	intron	CG34354 +	chr3R	28181112	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	RAL-461
2096	chr3R	28173685	28173701	chr3R	28181102	28181151	mdg1	7	7444	3.0	5.5	4.2	1.3	7466	chr3R	28173685	intron	CG34354 +	chr3R	28177418	intron	CG34354 +	chr3R	28181151	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	RAL-461
2097	chr3R	28302090	28302133	chr3R	28302549	28302562	jockey	8	454	12.0	10.5	11.2	0.7	472	chr3R	28302090	intergenic	not near genes	chr3R	28302326	intergenic	not near genes	chr3R	28302562	intergenic	not near genes	chr3R_8_28300001	chr3R_28300001	RAL-461
2107	chr3R	28758268	28758303	chr3R	28763905	28763910	roo	7	5630	7.0	0.0	3.5	1.6	5642	chr3R	28758268	intergenic	aqrs -	chr3R	28761089	intergenic	not near genes	chr3R	28763910	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-461
2108	chr3R	28792866	28792904	chr3R	28797966	28798004	jockey	6	5101	1.0	1.5	1.2	2.7	5138	chr3R	28792866	intergenic	not near genes	chr3R	28795435	intergenic	not near genes	chr3R	28798004	intergenic	not near genes	chr3R_6_28795001	chr3R_28795001	RAL-461
2117	chr3R	29079364	29079407	chr3R	29080756	29080795	NOF	10	1391	5.5	4.0	4.8	1.7	1431	chr3R	29079364	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080795	intron	CG11873 +	chr3R_10_29080001	chr3R_29080001	RAL-461
2122	chr3R	29319808	29319850	chr3R	29320147	29320178	jockey	13	334	4.5	4.0	4.2	2.5	370	chr3R	29319808	intergenic	Cnx99A -	chr3R	29319993	intergenic	Cnx99A -	chr3R	29320178	intergenic	not near genes	chr3R_13_29315001	chr3R_29315001	RAL-461
2130	chr3R	29738247	29738262	chr3R	29739734	29739738	hobo	6	1484	4.0	2.5	3.2	1.4	1491	chr3R	29738247	intergenic	CG1969 +,CG7598 +	chr3R	29738992	intron	CG1969 +	chr3R	29739738	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-461
2131	chr3R	29738265	29738290	chr3R	29739732	29739775	hobo	7	1479	1.5	2.5	2.0	2.3	1510	chr3R	29738265	intergenic	CG1969 +,CG7598 +	chr3R	29739020	intron	CG1969 +	chr3R	29739775	5` UTR	CG1969 +	chr3R_7_29735001	chr3R_29735001	RAL-461
2133	chr3R	29882004	29882012	chr3R	29891181	29891189	roo	5	9176	10.0	6.0	8.0	0.6	9185	chr3R	29882004	intron	CG31038 +	chr3R	29886596	intron	CG31038 +	chr3R	29891189	intron	CG31038 +	chr3R_5_29885001	chr3R_29885001	RAL-461
2134	chr3R	29882022	29882044	chr3R	29891178	29891221	roo	10	9173	6.0	4.0	5.0	1.7	9199	chr3R	29882022	intron	CG31038 +	chr3R	29886622	intron	CG31038 +	chr3R	29891221	intron	CG31038 +	chr3R_10_29885001	chr3R_29885001	RAL-461
2138	chr3R	30084836	30084878	chr3R	30086323	30086365	hobo	6	1487	1.5	2.5	2.0	2.0	1529	chr3R	30084836	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086365	intron	sima +	chr3R_6_30085001	chr3R_30085001	RAL-461
2150	chr3R	30375526	30375558	chr3R	30383169	30383201	412	5	7643	3.5	1.0	2.2	1.6	7675	chr3R	30375526	intergenic	not near genes	chr3R	30379364	intergenic	not near genes	chr3R	30383201	intergenic	not near genes	chr3R_5_30375001	chr3R_30375001	RAL-461
2151	chr3R	30396202	30396240	chr3R	30404482	30404516	roo	9	8278	3.0	6.0	4.5	1.6	8314	chr3R	30396202	intergenic	not near genes	chr3R	30400359	intergenic	not near genes	chr3R	30404516	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RAL-461
2154	chr3R	30480466	30480504	chr3R	30482945	30482992	jockey	10	2483	0.0	6.0	3.0	2.5	2526	chr3R	30480466	intron	PH4alphaEFB +	chr3R	30481729	intron	PH4alphaEFB +	chr3R	30482992	intron	PH4alphaEFB +	chr3R_10_30480001	chr3R_30480001	RAL-461
2160	chr3R	30679506	30679550	chr3R	30686995	30687024	blood	13	7483	1.0	7.0	4.0	2.6	7518	chr3R	30679506	intergenic	not near genes	chr3R	30683265	intergenic	not near genes	chr3R	30687024	intergenic	not near genes	chr3R_13_30680001	chr3R_30680001	RAL-461
2163	chr3R	30818790	30818841	chr3R	30820375	30820423	1360	12	1584	7.5	0.5	4.0	2.4	1633	chr3R	30818790	intron	cindr +	chr3R	30819606	intron	cindr +	chr3R	30820423	intron	cindr +	chr3R_12_30815001	chr3R_30815001	RAL-461
2172	chr3R	31074211	31074257	chr3R	31081828	31081875	springer	9	7613	4.0	0.5	2.2	2.8	7664	chr3R	31074211	intron	Sox100B +	chr3R	31078043	intron	Sox100B +	chr3R	31081875	intron	Sox100B +	chr3R_9_31075001	chr3R_31075001	RAL-461
2176	chr3R	31413077	31413120	chr3R	31418290	31418326	copia	7	5205	0.0	1.5	0.8	3.9	5249	chr3R	31413077	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418326	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	RAL-461
2185	chr3R	31691527	31691555	chr3R	31696296	31696319	Doc	8	4774	4.5	3.0	3.8	1.7	4792	chr3R	31691527	intergenic	not near genes	chr3R	31693923	intergenic	not near genes	chr3R	31696319	intergenic	not near genes	chr3R_8_31690001	chr3R_31690001	RAL-461
2195	chr3R	31997972	31998012	chr3R	32005462	32005495	blood	8	7488	5.5	3.0	4.2	1.5	7523	chr3R	31997972	intron	heph -	chr3R	32001734	intron	heph -	chr3R	32005495	intron	heph -	chr3R_8_32000001	chr3R_32000001	RAL-461
2200	chr4	76477	76518	chr4	81940	81960	I-element	9	5461	2.0	2.5	2.2	2.8	5483	chr4	76477	intron	pan +	chr4	79218	intron	pan +	chr4	81960	intron	pan +	chr4_9_75001	chr4_75001	RAL-461
2206	chr4	319970	320019	chr4	328166	328215	Stalker2	13	8191	6.5	5.0	5.8	1.9	8245	chr4	319970	3` UTR	CG32850 +	chr4	324092	intron	CG32850 +	chr4	328215	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_13_320001	chr4_320001	RAL-461
2210	chr4	671593	671636	chr4	680189	680239	Tirant	12	8597	5.5	6.0	5.8	1.8	8646	chr4	671593	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680239	intron	CG11360 +	chr4_12_675001	chr4_675001	RAL-461
2215	chrX	295836	295882	chrX	303476	303522	412	11	7636	2.0	4.0	3.0	2.8	7686	chrX	295836	intron	CG3777 +	chrX	299679	intron	CG3777 +	chrX	303522	intron	CG3777 +	chrX_11_295001	chrX_295001	RAL-461
2216	chrX	318458	318473	chrX	323564	323579	flea	6	5106	8.0	3.5	5.8	0.9	5121	chrX	318458	intron,intron	CG3777 +,CG32816 -	chrX	321018	intron,intron	CG3777 +,CG32816 -	chrX	323579	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	RAL-461
2217	chrX	318480	318499	chrX	323586	323590	flea	8	5104	4.5	5.5	5.0	1.3	5110	chrX	318480	intron,intron	CG3777 +,CG32816 -	chrX	321035	intron,intron	CG3777 +,CG32816 -	chrX	323590	intron,intron	CG3777 +,CG32816 -	chrX_8_320001	chrX_320001	RAL-461
2218	chrX	428408	428452	chrX	434611	434657	3S18	11	6200	6.0	4.5	5.2	1.8	6249	chrX	428408	intron	CG32816 -	chrX	431532	intron	CG32816 -	chrX	434657	intron	CG32816 -	chrX_11_430001	chrX_430001	RAL-461
2224	chrX	812258	812268	chrX	817898	817917	297	4	5647	4.0	2.5	3.2	1.0	5659	chrX	812258	intron	CG43867 -	chrX	815088	intron	CG43867 -	chrX	817917	intron	CG43867 -	chrX_4_815001	chrX_815001	RAL-461
2225	chrX	812283	812294	chrX	817896	817943	297	5	5635	2.0	2.5	2.2	1.6	5660	chrX	812283	intron	CG43867 -	chrX	815113	intron	CG43867 -	chrX	817943	intron	CG43867 -	chrX_5_815001	chrX_815001	RAL-461
2226	chrX	827588	827624	chrX	835396	835399	roo	5	7808	6.5	0.0	3.2	1.2	7811	chrX	827588	intron	CG43867 -	chrX	831494	intron	CG43867 -	chrX	835399	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-461
2227	chrX	906690	906714	chrX	908499	908523	S-element	6	1809	4.5	3.5	4.0	1.2	1833	chrX	906690	intron	CG43867 -	chrX	907606	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-461
2230	chrX	1357794	1357813	chrX	1367954	1367954	Doc	7	10165	4.0	3.5	3.8	1.5	10160	chrX	1357794	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367954	intergenic	not near genes	chrX_7_1360001	chrX_1360001	RAL-461
2231	chrX	1930532	1930560	chrX	1938115	1938126	opus	4	7582	5.0	7.5	6.2	0.6	7594	chrX	1930532	intergenic	CG11596 +	chrX	1934329	intergenic	not near genes	chrX	1938126	3` UTR	CG3857 -	chrX_4_1930001	chrX_1930001	RAL-461
2237	chrX	2844897	2844930	chrX	2852327	2852340	mdg1	9	7422	2.5	3.0	2.8	2.4	7443	chrX	2844897	intron	kirre +	chrX	2848618	intron	kirre +	chrX	2852340	intron	kirre +	chrX_9_2845001	chrX_2845001	RAL-461
2240	chrX	3075622	3075664	chrX	3080948	3080990	Transpac	9	5324	4.5	4.5	4.5	1.6	5368	chrX	3075622	intron	kirre +	chrX	3078306	intron	kirre +	chrX	3080990	intron	kirre +	chrX_9_3075001	chrX_3075001	RAL-461
2242	chrX	3218491	3218538	chrX	3227660	3227703	roo	5	9167	1.5	1.5	1.5	2.0	9212	chrX	3218491	intron	dnc +	chrX	3223097	intron	dnc +	chrX	3227703	intron	dnc +	chrX_5_3220001	chrX_3220001	RAL-461
2246	chrX	3493074	3493125	chrX	3502253	3502274	roo	4	9166	3.0	2.5	2.8	1.1	9200	chrX	3493074	intron,intron	CR44999 +,Gas8 -	chrX	3497674	intron,intron	CR44999 +,Gas8 -	chrX	3502274	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-461
2248	chrX	3597544	3597575	chrX	3619717	3619721	roo	9	22176	6.0	2.0	4.0	1.8	22177	chrX	3597544	intron	AstA-R1 +	chrX	3608632	intron	AstA-R1 +	chrX	3619721	intron	AstA-R1 +	chrX_9_3605001	chrX_3605001	RAL-461
2250	chrX	3726756	3726771	chrX	3730173	3730188	NOF	4	3417	2.5	0.5	1.5	1.6	3432	chrX	3726756	intron	tlk +	chrX	3728472	intron	tlk +	chrX	3730188	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-461
2251	chrX	3842311	3842353	chrX	3842567	3842614	pogo	8	256	3.5	4.0	3.8	1.7	303	chrX	3842311	intron	ec +	chrX	3842462	intron	ec +	chrX	3842614	intron	ec +	chrX_8_3840001	chrX_3840001	RAL-461
2254	chrX	3986845	3986879	chrX	3994498	3994522	412	12	7645	2.5	0.5	1.5	4.8	7677	chrX	3986845	intergenic	not near genes	chrX	3990684	intergenic	not near genes	chrX	3994522	intergenic	not near genes	chrX_12_3990001	chrX_3990001	RAL-461
2255	chrX	4157881	4157918	chrX	4164954	4164982	297	7	7071	1.5	3.5	2.5	2.0	7101	chrX	4157881	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4164982	intron	Fas2 -	chrX_7_4160001	chrX_4160001	RAL-461
2261	chrX	4700371	4700417	chrX	4700734	4700780	jockey	19	360	4.0	4.5	4.2	3.7	409	chrX	4700371	3` UTR	ctp +	chrX	4700576	3` UTR	ctp +	chrX	4700780	3` UTR	ctp +	chrX_19_4700001	chrX_4700001	RAL-461
2264	chrX	4763245	4763285	chrX	4763747	4763773	Stalker4	7	500	3.0	3.5	3.2	1.7	528	chrX	4763245	intergenic	not near genes	chrX	4763509	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_7_4760001	chrX_4760001	RAL-461
2265	chrX	4827973	4827989	chrX	4835344	4835354	Stalker4	5	7375	2.0	2.0	2.0	1.7	7381	chrX	4827973	intergenic	not near genes	chrX	4831664	intergenic	not near genes	chrX	4835354	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-461
2266	chrX	4827990	4827997	chrX	4835343	4835357	Stalker4	4	7368	2.0	1.5	1.8	1.4	7367	chrX	4827990	intergenic	not near genes	chrX	4831674	intergenic	not near genes	chrX	4835357	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-461
2268	chrX	4990021	4990072	chrX	4997255	4997301	roo	13	7234	3.0	1.5	2.2	4.1	7280	chrX	4990021	intron	CR44833 -	chrX	4993661	intron	CR44833 -	chrX	4997301	intron	CR44833 -	chrX_13_4990001	chrX_4990001	RAL-461
2269	chrX	5096275	5096305	chrX	5103840	5103869	springer	5	7576	0.0	1.5	0.8	2.8	7594	chrX	5096275	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103869	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	RAL-461
2275	chrX	5524827	5524859	chrX	5528706	5528741	412	5	3881	4.5	1.0	2.8	1.3	3914	chrX	5524827	intergenic	snoRNA:Psi28S-3342 -	chrX	5526784	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_5_5525001	chrX_5525001	RAL-461
2279	chrX	5884150	5884186	chrX	5884401	5884442	pogo	9	256	3.5	4.0	3.8	1.9	292	chrX	5884150	intron	CR45668 -	chrX	5884296	intron	CR45668 -	chrX	5884442	intron	CR45668 -	chrX_9_5880001	chrX_5880001	RAL-461
2283	chrX	6171566	6171614	chrX	6179019	6179057	Quasimodo	7	7446	2.0	3.5	2.8	1.8	7491	chrX	6171566	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179057	intron	Ca-alpha1T -	chrX_7_6175001	chrX_6175001	RAL-461
2285	chrX	6562814	6562828	chrX	6571300	6571330	Tirant	6	8497	6.0	2.0	4.0	1.2	8516	chrX	6562814	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571330	intron	CG34417 +	chrX_6_6565001	chrX_6565001	RAL-461
2291	chrX	7023607	7023628	chrX	7030991	7031038	Tabor	4	7404	6.0	2.5	4.2	0.8	7431	chrX	7023607	intron	CG12541 -	chrX	7027322	intron	CG12541 -	chrX	7031038	intron	CG12541 -	chrX_4_7025001	chrX_7025001	RAL-461
2292	chrX	7125238	7125272	chrX	7134417	7134451	roo	9	9176	1.0	4.5	2.8	2.4	9213	chrX	7125238	intergenic	not near genes	chrX	7129844	intergenic	not near genes	chrX	7134451	intergenic	not near genes	chrX_9_7125001	chrX_7125001	RAL-461
2298	chrX	7702885	7702929	chrX	7703344	7703366	jockey	11	450	6.0	4.5	5.2	1.8	481	chrX	7702885	intron	CHES-1-like -	chrX	7703126	intron	CHES-1-like -	chrX	7703366	intron	CHES-1-like -	chrX_11_7700001	chrX_7700001	RAL-461
2300	chrX	8031429	8031451	chrX	8035733	8035780	Juan	7	4323	15.5	5.5	10.5	0.6	4351	chrX	8031429	intergenic	not near genes	chrX	8033604	intergenic	not near genes	chrX	8035780	3` UTR	CG2233 -	chrX_7_8030001	chrX_8030001	RAL-461
2312	chrX	8922340	8922361	chrX	8922768	8922815	jockey	9	440	2.0	4.0	3.0	2.2	475	chrX	8922340	intron	rdgA +	chrX	8922578	intron	rdgA +	chrX	8922815	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-461
2313	chrX	8948736	8948789	chrX	8956266	8956316	roo	8	7528	1.0	3.5	2.2	2.5	7580	chrX	8948736	intron	rdgA +	chrX	8952526	intron	rdgA +	chrX	8956316	intron	rdgA +	chrX_8_8950001	chrX_8950001	RAL-461
2319	chrX	9508120	9508164	chrX	9509658	9509672	jockey	7	1533	5.5	2.5	4.0	1.4	1552	chrX	9508120	intron	CG32700 -	chrX	9508896	intron	CG32700 -	chrX	9509672	intron	CG32700 -	chrX_7_9505001	chrX_9505001	RAL-461
2321	chrX	9575780	9575805	chrX	9576119	9576122	mdg3	8	336	4.0	7.5	5.8	1.2	342	chrX	9575780	intron,exon	CG32699 -,CG42395 -	chrX	9575951	intron,intron	CG32699 -,CG42395 -	chrX	9576122	intron,exon	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-461
2322	chrX	9575806	9575817	chrX	9576113	9576161	mdg3	6	336	3.5	6.5	5.0	1.0	355	chrX	9575806	intron,exon	CG32699 -,CG42395 -	chrX	9575984	intron,intron	CG32699 -,CG42395 -	chrX	9576161	intron,5` UTR	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	RAL-461
2326	chrX	10138197	10138248	chrX	10145721	10145762	412	15	7522	5.5	4.0	4.8	2.6	7565	chrX	10138197	intron,intron	RhoU +,CR44894 -	chrX	10141980	intron,intron	RhoU +,CR44894 -	chrX	10145762	intron,intron	RhoU +,CR44894 -	chrX_15_10140001	chrX_10140001	RAL-461
2328	chrX	10267313	10267329	chrX	10276473	10276499	roo	4	9168	0.5	2.0	1.2	1.8	9186	chrX	10267313	3` UTR	alpha-Man-I -	chrX	10271906	intron	alpha-Man-I -	chrX	10276499	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	RAL-461
2331	chrX	10348783	10348826	chrX	10356368	10356401	springer	6	7577	3.0	4.0	3.5	1.3	7618	chrX	10348783	intergenic	snoRNA:U3:9B +	chrX	10352592	intergenic	not near genes	chrX	10356401	intergenic	l(1)G0289 -	chrX_6_10350001	chrX_10350001	RAL-461
2336	chrX	10550846	10550855	chrX	10552333	10552342	hobo	4	1486	2.5	2.0	2.2	1.2	1496	chrX	10550846	intron	spri -	chrX	10551594	intron	spri -	chrX	10552342	intron	spri -	chrX_4_10550001	chrX_10550001	RAL-461
2337	chrX	10686032	10686079	chrX	10691189	10691236	roo	5	5152	3.0	2.5	2.8	1.3	5204	chrX	10686032	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691236	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-461
2345	chrX	11095984	11096022	chrX	11103106	11103144	HMS-Beagle	9	7121	3.5	5.0	4.2	1.7	7160	chrX	11095984	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103144	intron	CG42249 +	chrX_9_11095001	chrX_11095001	RAL-461
2346	chrX	11184236	11184264	chrX	11189332	11189360	flea	5	5088	2.0	2.5	2.2	1.6	5124	chrX	11184236	intergenic	not near genes	chrX	11186798	intergenic	not near genes	chrX	11189360	intergenic	not near genes	chrX_5_11185001	chrX_11185001	RAL-461
2350	chrX	11535023	11535046	chrX	11541513	11541536	Burdock	4	6490	7.0	3.5	5.2	0.6	6513	chrX	11535023	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541536	intron	Drak +	chrX_4_11535001	chrX_11535001	RAL-461
2351	chrX	11633402	11633446	chrX	11640476	11640520	297	9	7071	3.5	6.5	5.0	1.5	7118	chrX	11633402	intron	Ptp10D +	chrX	11636961	intron	Ptp10D +	chrX	11640520	intron	Ptp10D +	chrX_9_11635001	chrX_11635001	RAL-461
2352	chrX	11645112	11645134	chrX	11648292	11648324	NOF	4	3188	1.0	2.5	1.8	1.4	3212	chrX	11645112	intron	Ptp10D +	chrX	11646718	intron	Ptp10D +	chrX	11648324	intron	Ptp10D +	chrX_4_11645001	chrX_11645001	RAL-461
2376	chrX	13401471	13401483	chrX	13401843	13401855	jockey	5	372	3.5	2.0	2.8	1.3	384	chrX	13401471	intergenic	CG1673 +,CG12725 -	chrX	13401663	intergenic	CG12725 -,CG1673 +	chrX	13401855	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-461
2377	chrX	13401484	13401510	chrX	13401835	13401882	jockey	8	365	3.5	2.0	2.8	2.1	398	chrX	13401484	intergenic	CG1673 +,CG12725 -	chrX	13401683	intergenic	CG12725 -,CG1673 +	chrX	13401882	3` UTR	CG12725 -	chrX_8_13400001	chrX_13400001	RAL-461
2378	chrX	13403001	13403032	chrX	13403148	13403179	X-element	5	146	5.0	2.0	3.5	1.1	178	chrX	13403001	intergenic	CG12725 -	chrX	13403090	intergenic	CG12725 -	chrX	13403179	intergenic	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-461
2379	chrX	13429445	13429477	chrX	13430614	13430646	jockey	4	1169	5.0	4.0	4.5	0.7	1201	chrX	13429445	intergenic	not near genes	chrX	13430046	intergenic	not near genes	chrX	13430646	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-461
2380	chrX	13463634	13463667	chrX	13469231	13469261	mdg3	4	5596	3.5	3.5	3.5	0.9	5627	chrX	13463634	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469261	intron	Neto +	chrX_4_13465001	chrX_13465001	RAL-461
2384	chrX	13937958	13937992	chrX	13941249	13941283	I-element	5	3288	1.5	1.0	1.2	2.3	3325	chrX	13937958	intron	mamo -	chrX	13939620	intron	mamo -	chrX	13941283	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-461
2386	chrX	14105007	14105037	chrX	14114178	14114192	roo	4	9161	5.5	2.5	4.0	0.8	9185	chrX	14105007	intergenic	not near genes	chrX	14109600	intergenic	not near genes	chrX	14114192	5` UTR	CR44657 +	chrX_4_14105001	chrX_14105001	RAL-461
2389	chrX	14157571	14157607	chrX	14163248	14163263	297	5	5668	4.5	2.0	3.2	1.2	5692	chrX	14157571	intergenic	not near genes	chrX	14160417	intergenic	not near genes	chrX	14163263	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-461
2395	chrX	14416302	14416315	chrX	14421090	14421103	F-element	5	4788	3.5	2.5	3.0	1.2	4801	chrX	14416302	intron	dpr8 +	chrX	14418702	intron	dpr8 +	chrX	14421103	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-461
2398	chrX	14636448	14636497	chrX	14641906	14641911	I-element	5	5443	0.5	2.0	1.2	2.3	5463	chrX	14636448	intron	NetA -	chrX	14639180	intron	NetA -	chrX	14641911	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-461
2402	chrX	14778020	14778052	chrX	14782832	14782869	Doc	14	4814	5.5	10.0	7.8	1.6	4849	chrX	14778020	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782869	intergenic	Ag5r2 -	chrX_14_14780001	chrX_14780001	RAL-461
2407	chrX	14936841	14936874	chrX	14946118	14946132	roo	10	9274	8.5	2.5	5.5	1.5	9291	chrX	14936841	intron	pdgy -	chrX	14941486	intron	pdgy -	chrX	14946132	intron	pdgy -	chrX_10_14940001	chrX_14940001	RAL-461
2413	chrX	15413068	15413084	chrX	15417355	15417360	Juan	4	4300	4.0	0.5	2.2	1.2	4292	chrX	15413068	intron	Cngl -	chrX	15415214	intron	Cngl -	chrX	15417360	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-461
2414	chrX	15421925	15421949	chrX	15423435	15423475	pogo	7	1520	6.0	1.5	3.8	1.5	1550	chrX	15421925	intron	Cngl -	chrX	15422700	intron	Cngl -	chrX	15423475	intron	Cngl -	chrX_7_15420001	chrX_15420001	RAL-461
2428	chrX	16222775	16222805	chrX	16231144	16231174	roo	5	8370	3.0	4.0	3.5	1.1	8399	chrX	16222775	intergenic	not near genes	chrX	16226974	intergenic	not near genes	chrX	16231174	intergenic	not near genes	chrX_5_16225001	chrX_16225001	RAL-461
2431	chrX	16340647	16340698	chrX	16349822	16349875	roo	8	9175	1.0	5.0	3.0	2.0	9228	chrX	16340647	intergenic	Dsp1 +	chrX	16345261	intergenic	not near genes	chrX	16349875	intergenic	sl +	chrX_8_16345001	chrX_16345001	RAL-461
2435	chrX	16492632	16492675	chrX	16498229	16498272	mdg3	13	5594	9.5	4.5	7.0	1.6	5640	chrX	16492632	intron	para -	chrX	16495452	intron	para -	chrX	16498272	exon	para -	chrX_13_16495001	chrX_16495001	RAL-461
2442	chrX	16936007	16936027	chrX	16936445	16936465	jockey	4	438	0.0	5.5	2.8	1.1	458	chrX	16936007	intron	CG4928 +	chrX	16936236	intron	CG4928 +	chrX	16936465	intron	CG4928 +	chrX_4_16935001	chrX_16935001	RAL-461
2445	chrX	17057918	17057963	chrX	17058179	17058203	pogo	6	255	2.0	2.0	2.0	2.0	285	chrX	17057918	intron	CG45002 -	chrX	17058060	intron	CG45002 -	chrX	17058203	intron	CG45002 -	chrX_6_17055001	chrX_17055001	RAL-461
2448	chrX	17195200	17195236	chrX	17200291	17200307	flea	17	5097	3.0	4.5	3.8	3.5	5107	chrX	17195200	3` UTR	baz +	chrX	17197754	3` UTR	baz +	chrX	17200307	3` UTR	baz +	chrX_17_17195001	chrX_17195001	RAL-461
2467	chrX	18194047	18194102	chrX	18194602	18194647	BS	14	552	5.0	2.5	3.8	2.9	600	chrX	18194047	intron	Frq2 +	chrX	18194347	intron	Frq2 +	chrX	18194647	intron	Frq2 +	chrX_14_18190001	chrX_18190001	RAL-461
2468	chrX	18429477	18429527	chrX	18434808	18434853	Transpac	15	5326	5.5	3.0	4.2	2.9	5376	chrX	18429477	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434853	intergenic	not near genes	chrX_15_18430001	chrX_18430001	RAL-461
2482	chrX	19060400	19060434	chrX	19065194	19065238	Doc	9	4802	5.0	3.5	4.2	1.7	4838	chrX	19060400	intron	CG14190 +	chrX	19062819	intron	CG14190 +	chrX	19065238	intron	CG14190 +	chrX_9_19060001	chrX_19060001	RAL-461
2488	chrX	19136535	19136584	chrX	19143475	19143484	412	7	6934	2.5	4.0	3.2	1.7	6949	chrX	19136535	intergenic	not near genes	chrX	19140010	intergenic	not near genes	chrX	19143484	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	RAL-461
2493	chrX	19356984	19357019	chrX	19358440	19358498	NOF	4	1464	3.5	1.0	2.2	1.2	1514	chrX	19356984	intron	kek5 +	chrX	19357741	intron	kek5 +	chrX	19358498	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-461
2494	chrX	19380135	19380185	chrX	19380396	19380446	pogo	10	258	3.5	3.5	3.5	2.2	311	chrX	19380135	intron	kek5 +	chrX	19380290	intron	kek5 +	chrX	19380446	intron	kek5 +	chrX_10_19380001	chrX_19380001	RAL-461
2497	chrX	19472119	19472146	chrX	19472699	19472703	jockey	4	579	2.0	4.0	3.0	1.0	584	chrX	19472119	intergenic	kek5 +	chrX	19472411	intergenic	kek5 +	chrX	19472703	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-461
2523	chrX	20836713	20836749	chrX	20844329	20844371	roo	7	7618	2.0	4.0	3.0	1.8	7658	chrX	20836713	intron	shakB -	chrX	20840542	intron	shakB -	chrX	20844371	intron	shakB -	chrX_7_20840001	chrX_20840001	RAL-461
2524	chrX	20940718	20940735	chrX	20942195	20942218	hobo	4	1484	3.0	3.5	3.2	1.0	1500	chrX	20940718	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942218	intergenic	not near genes	chrX_4_20940001	chrX_20940001	RAL-461
2528	chrX	21061858	21061895	chrX	21062363	21062400	roo	9	505	3.0	3.0	3.0	2.2	542	chrX	21061858	intron	bves +	chrX	21062129	intron	bves +	chrX	21062400	intron,3` UTR	bves +,CG32512 -	chrX_9_21060001	chrX_21060001	RAL-461
2532	chrX	21086122	21086162	chrX	21087166	21087211	jockey	16	1046	1.5	4.5	3.0	4.0	1089	chrX	21086122	intergenic	not near genes	chrX	21086666	intergenic	not near genes	chrX	21087211	intergenic	not near genes	chrX_16_21085001	chrX_21085001	RAL-461
2542	chrX	21458687	21458717	chrX	21464143	21464158	Ivk	8	5454	4.0	7.0	5.5	1.2	5471	chrX	21458687	intergenic	not near genes	chrX	21461422	intergenic	not near genes	chrX	21464158	intergenic	not near genes	chrX_8_21460001	chrX_21460001	RAL-461
2549	chrX	22522641	22522660	chrX	22525458	22525484	NOF	4	2822	4.5	0.0	2.2	1.2	2843	chrX	22522641	intron	CG17600 +	chrX	22524062	intron	CG17600 +	chrX	22525484	intron	CG17600 +	chrX_4_22520001	chrX_22520001	RAL-461
2550	chrX	22620478	22620517	chrX	22626765	22626784	297	9	6285	3.5	3.5	3.5	2.0	6306	chrX	22620478	intron	Cda4 -	chrX	22623631	intron	Cda4 -	chrX	22626784	intron	Cda4 -	chrX_9_22620001	chrX_22620001	RAL-461
2551	chrX	22681470	22681515	chrX	22688946	22688951	HMS-Beagle2	4	7466	0.5	4.0	2.2	1.2	7481	chrX	22681470	intron	CR44997 +	chrX	22685210	intron	CR44997 +	chrX	22688951	intron	CR44997 +	chrX_4_22685001	chrX_22685001	RAL-461
2552	chrX	22697490	22697512	chrX	22701797	22701829	Juan	7	4316	4.0	5.5	4.8	1.2	4339	chrX	22697490	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701829	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-461
2553	chrX	22771488	22771535	chrX	22774796	22774838	297	6	3301	1.5	1.5	1.5	2.4	3350	chrX	22771488	intron	CR44997 +	chrX	22773163	intron	CR44997 +	chrX	22774838	intron	CR44997 +	chrX_6_22770001	chrX_22770001	RAL-461
2563	chrX	22987100	22987134	chrX	22989768	22989812	Burdock	10	2673	3.0	4.0	3.5	2.2	2712	chrX	22987100	intron,intron	stnA -,stnB -	chrX	22988456	intron,intron	stnA -,stnB -	chrX	22989812	intron,intron	stnA -,stnB -	chrX_10_22985001	chrX_22985001	RAL-461
2564	chrX	22996297	22996333	chrX	23003551	23003587	roo	13	7252	2.5	6.0	4.2	2.5	7290	chrX	22996297	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003587	intron,intron	stnA -,stnB -	chrX_13_22995001	chrX_22995001	RAL-461