SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47444 47466 chr2L 52569 52578 jockey 8 5121 8.5 10.0 9.2 0.8 5134 chr2L 47444 intron Cda5 - chr2L 50011 intron Cda5 - chr2L 52578 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-461 2 chr2L 47470 47471 chr2L 52568 52596 jockey 4 5117 7.5 10.0 8.8 0.4 5126 chr2L 47470 intron Cda5 - chr2L 50033 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-461 3 chr2L 47477 47487 chr2L 52562 52612 jockey 5 5114 5.5 9.5 7.5 0.6 5135 chr2L 47477 intron Cda5 - chr2L 50044 intron Cda5 - chr2L 52612 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-461 4 chr2L 259663 259713 chr2L 259769 259784 6 83 3.0 1.5 2.2 1.9 121 chr2L 259663 intron CG3645 - chr2L 259724 intron CG3645 - chr2L 259784 intron CG3645 - chr2L_6_255001 chr2L_255001 RAL-461 5 chr2L 263281 263330 chr2L 263447 263479 8 164 0.0 3.0 1.5 3.2 198 chr2L 263281 intron,3` UTR CG3645 -,CG17075 - chr2L 263380 intron,3` UTR CG3645 -,CG17075 - chr2L 263479 intron,3` UTR CG3645 -,CG17075 - chr2L_8_260001 chr2L_260001 RAL-461 6 chr2L 297674 297714 chr2L 297789 297834 6 117 4.0 0.5 2.2 1.9 160 chr2L 297674 intergenic Pi3K21B +,Hop + chr2L 297754 intergenic Pi3K21B +,Hop + chr2L 297834 intergenic Pi3K21B +,Hop + chr2L_6_295001 chr2L_295001 RAL-461 7 chr2L 314126 314154 chr2L 314223 314251 5 96 1.5 1.0 1.2 2.3 125 chr2L 314126 intron Plc21C + chr2L 314188 intron Plc21C + chr2L 314251 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-461 8 chr2L 323441 323479 chr2L 323539 323577 10 92 5.5 3.0 4.2 1.9 136 chr2L 323441 intron Plc21C + chr2L 323509 intron Plc21C + chr2L 323577 intron Plc21C + chr2L_10_320001 chr2L_320001 RAL-461 9 chr2L 325148 325151 chr2L 325215 325233 4 72 3.0 7.5 5.2 0.6 85 chr2L 325148 intron Plc21C + chr2L 325190 intron Plc21C + chr2L 325233 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-461 10 chr2L 347881 347919 chr2L 355395 355419 blood 13 7514 4.0 7.0 5.5 2.0 7538 chr2L 347881 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_13_350001 chr2L_350001 RAL-461 11 chr2L 371432 371458 chr2L 371531 371537 5 95 2.5 5.5 4.0 1.0 105 chr2L 371432 intergenic not near genes chr2L 371484 intergenic not near genes chr2L 371537 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-461 12 chr2L 407935 407972 chr2L 408036 408073 19 97 5.5 5.0 5.2 3.1 138 chr2L 407935 3` UTR RpI135 + chr2L 408004 intergenic AP-2alpha -,RpI135 + chr2L 408073 3` UTR AP-2alpha - chr2L_19_405001 chr2L_405001 RAL-461 13 chr2L 528430 528464 chr2L 528535 528569 10 104 3.5 3.0 3.2 2.4 139 chr2L 528430 intron ush + chr2L 528500 intron ush + chr2L 528569 intron ush + chr2L_10_525001 chr2L_525001 RAL-461 14 chr2L 580138 580153 chr2L 580217 580242 4 88 3.5 1.0 2.2 1.2 104 chr2L 580138 intergenic not near genes chr2L 580190 intergenic not near genes chr2L 580242 intergenic not near genes chr2L_4_580001 chr2L_580001 RAL-461 15 chr2L 590314 590344 chr2L 590426 590456 10 112 1.0 2.5 1.8 3.6 142 chr2L 590314 intron Gsc - chr2L 590385 intron Gsc - chr2L 590456 intron Gsc - chr2L_10_590001 chr2L_590001 RAL-461 16 chr2L 686928 686947 chr2L 695972 696002 roo 6 9055 1.5 3.0 2.2 1.9 9074 chr2L 686928 intron ds - chr2L 691465 intron ds - chr2L 696002 intron ds - chr2L_6_690001 chr2L_690001 RAL-461 17 chr2L 770445 770492 chr2L 772245 772245 Bari1 11 1787 2.5 0.5 1.5 4.4 1800 chr2L 770445 intergenic not near genes chr2L 771345 intergenic not near genes chr2L 772245 intergenic CR44614 + chr2L_11_770001 chr2L_770001 RAL-461 18 chr2L 795256 795289 chr2L 795373 795429 4 130 3.5 0.0 1.8 1.4 173 chr2L 795256 intergenic not near genes chr2L 795342 intergenic not near genes chr2L 795429 intergenic not near genes chr2L_4_795001 chr2L_795001 RAL-461 19 chr2L 877827 877876 chr2L 877923 877934 7 92 3.0 3.5 3.2 1.7 107 chr2L 877827 3` UTR,exon CG15824 -,ninaA + chr2L 877880 3` UTR,intron CG15824 -,ninaA + chr2L 877934 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-461 20 chr2L 976858 976891 chr2L 984514 984547 roo 8 7654 9.0 0.5 4.8 1.4 7689 chr2L 976858 intergenic not near genes chr2L 980702 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-461 21 chr2L 996710 996741 chr2L 1005825 1005846 roo 4 9112 6.0 4.0 5.0 0.7 9136 chr2L 996710 intergenic not near genes chr2L 1001278 intergenic not near genes chr2L 1005846 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-461 22 chr2L 1035547 1035591 chr2L 1035644 1035668 7 92 4.5 2.0 3.2 1.7 121 chr2L 1035547 intron IA-2 - chr2L 1035608 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-461 23 chr2L 1042584 1042626 chr2L 1042695 1042707 11 107 0.0 0.0 0.0 11.0 123 chr2L 1042584 intron IA-2 - chr2L 1042646 intron IA-2 - chr2L 1042707 intron IA-2 - chr2L_11_1040001 chr2L_1040001 RAL-461 24 chr2L 1083689 1083721 chr2L 1083776 1083807 7 92 3.0 2.0 2.5 2.0 118 chr2L 1083689 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083748 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083807 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_7_1080001 chr2L_1080001 RAL-461 25 chr2L 1126662 1126681 chr2L 1126758 1126772 4 89 3.5 3.5 3.5 0.9 110 chr2L 1126662 intron Pino - chr2L 1126717 intron Pino - chr2L 1126772 intron Pino - chr2L_4_1125001 chr2L_1125001 RAL-461 26 chr2L 1126683 1126704 chr2L 1126748 1126798 8 82 2.0 1.5 1.8 2.9 115 chr2L 1126683 intron Pino - chr2L 1126740 intron Pino - chr2L 1126798 intron Pino - chr2L_8_1125001 chr2L_1125001 RAL-461 27 chr2L 1156862 1156885 chr2L 1156965 1157010 5 121 5.0 1.5 3.2 1.2 148 chr2L 1156862 intron capt - chr2L 1156936 intron capt - chr2L 1157010 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-461 28 chr2L 1164229 1164278 chr2L 1164335 1164384 11 106 2.0 1.0 1.5 4.4 155 chr2L 1164229 intergenic IntS14 +,CG5080 - chr2L 1164306 intergenic IntS14 +,CG5080 - chr2L 1164384 intergenic IntS14 +,CG5080 - chr2L_11_1160001 chr2L_1160001 RAL-461 29 chr2L 1178672 1178698 chr2L 1178776 1178796 13 102 5.0 5.5 5.2 2.1 124 chr2L 1178672 intron CG4896 + chr2L 1178734 intron CG4896 + chr2L 1178796 intron CG4896 + chr2L_13_1175001 chr2L_1175001 RAL-461 30 chr2L 1220122 1220137 chr2L 1227608 1227623 blood 8 7484 8.5 4.5 6.5 1.1 7501 chr2L 1220122 intron CG42329 + chr2L 1223872 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-461 31 chr2L 1220142 1220147 chr2L 1227598 1227625 blood 5 7472 7.5 3.0 5.2 0.8 7483 chr2L 1220142 intron CG42329 + chr2L 1223884 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-461 32 chr2L 1261212 1261260 chr2L 1261313 1261334 10 92 0.5 2.0 1.2 4.5 122 chr2L 1261212 intron robo3 + chr2L 1261273 intron robo3 + chr2L 1261334 intron robo3 + chr2L_10_1260001 chr2L_1260001 RAL-461 33 chr2L 1301749 1301783 chr2L 1302306 1302337 gypsy 8 556 0.0 10.5 5.2 1.3 588 chr2L 1301749 intergenic not near genes chr2L 1302043 intergenic not near genes chr2L 1302337 intergenic not near genes chr2L_8_1300001 chr2L_1300001 RAL-461 34 chr2L 1327158 1327169 chr2L 1327578 1327583 6 418 7.5 4.5 6.0 0.9 425 chr2L 1327158 intergenic not near genes chr2L 1327370 intergenic not near genes chr2L 1327583 intergenic not near genes chr2L_6_1325001 chr2L_1325001 RAL-461 35 chr2L 1327172 1327209 chr2L 1327576 1327629 13 415 3.5 4.0 3.8 2.7 457 chr2L 1327172 intergenic not near genes chr2L 1327400 intergenic not near genes chr2L 1327629 intergenic not near genes chr2L_13_1325001 chr2L_1325001 RAL-461 36 chr2L 1363437 1363456 chr2L 1363915 1363941 4 484 4.5 1.0 2.8 1.1 504 chr2L 1363437 intergenic not near genes chr2L 1363689 intergenic not near genes chr2L 1363941 intergenic not near genes chr2L_4_1360001 chr2L_1360001 RAL-461 37 chr2L 1416780 1416832 chr2L 1416887 1416939 9 97 3.0 2.5 2.8 2.4 159 chr2L 1416780 intron lea - chr2L 1416860 intron lea - chr2L 1416939 intron lea - chr2L_9_1415001 chr2L_1415001 RAL-461 38 chr2L 1481422 1481456 chr2L 1481528 1481562 12 104 6.5 1.0 3.8 2.5 140 chr2L 1481422 intergenic not near genes chr2L 1481492 intergenic not near genes chr2L 1481562 intergenic not near genes chr2L_12_1480001 chr2L_1480001 RAL-461 39 chr2L 1512614 1512654 chr2L 1512893 1512912 8 274 8.0 6.0 7.0 1.0 298 chr2L 1512614 intergenic not near genes chr2L 1512763 intergenic not near genes chr2L 1512912 intergenic not near genes chr2L_8_1510001 chr2L_1510001 RAL-461 40 chr2L 1536508 1536515 chr2L 1536625 1536645 4 123 0.0 1.0 0.5 2.7 137 chr2L 1536508 intergenic not near genes chr2L 1536576 intergenic not near genes chr2L 1536645 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-461 41 chr2L 1570673 1570708 chr2L 1573565 1573590 F-element 8 2890 5.5 1.5 3.5 1.8 2917 chr2L 1570673 intron haf + chr2L 1572132 intron haf + chr2L 1573590 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-461 42 chr2L 1590943 1590975 chr2L 1591039 1591050 9 91 3.5 4.0 3.8 1.9 107 chr2L 1590943 intron haf + chr2L 1590996 intron haf + chr2L 1591050 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-461 43 chr2L 1635413 1635430 chr2L 1635554 1635586 5 151 2.5 6.0 4.2 1.0 173 chr2L 1635413 intergenic not near genes chr2L 1635500 intergenic not near genes chr2L 1635586 intergenic not near genes chr2L_5_1635001 chr2L_1635001 RAL-461 44 chr2L 1655443 1655480 chr2L 1655544 1655575 9 100 4.0 3.5 3.8 1.9 132 chr2L 1655443 intron chinmo + chr2L 1655509 intron chinmo + chr2L 1655575 intron chinmo + chr2L_9_1655001 chr2L_1655001 RAL-461 45 chr2L 1662005 1662032 chr2L 1662110 1662125 10 101 3.0 0.0 1.5 4.0 120 chr2L 1662005 intron chinmo + chr2L 1662065 intron chinmo + chr2L 1662125 intron chinmo + chr2L_10_1660001 chr2L_1660001 RAL-461 46 chr2L 1678944 1679007 chr2L 1686447 1686476 blood 7 7489 0.5 8.5 4.5 1.3 7532 chr2L 1678944 intron chinmo + chr2L 1682710 intron chinmo + chr2L 1686476 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-461 47 chr2L 1711338 1711383 chr2L 1711682 1711727 mdg3 8 332 2.5 2.0 2.2 2.5 389 chr2L 1711338 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711727 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-461 48 chr2L 1724790 1724795 chr2L 1724892 1724897 6 102 17.5 5.5 11.5 0.5 107 chr2L 1724790 3` UTR Eno - chr2L 1724844 3` UTR Eno - chr2L 1724897 3` UTR Eno - chr2L_6_1720001 chr2L_1720001 RAL-461 49 chr2L 1724802 1724833 chr2L 1724885 1724935 18 97 9.0 4.0 6.5 2.4 133 chr2L 1724802 3` UTR Eno - chr2L 1724868 3` UTR Eno - chr2L 1724935 3` UTR Eno - chr2L_18_1720001 chr2L_1720001 RAL-461 50 chr2L 1842265 1842314 chr2L 1842364 1842410 11 88 2.5 3.5 3.0 2.8 145 chr2L 1842265 intron wry + chr2L 1842338 intron wry + chr2L 1842410 intron wry + chr2L_11_1840001 chr2L_1840001 RAL-461 51 chr2L 1852783 1852832 chr2L 1852896 1852945 8 106 1.0 3.0 2.0 2.7 162 chr2L 1852783 exon wry + chr2L 1852864 intron wry + chr2L 1852945 intron wry + chr2L_8_1850001 chr2L_1850001 RAL-461 52 chr2L 1908077 1908091 chr2L 1908190 1908207 5 114 1.5 5.0 3.2 1.2 130 chr2L 1908077 intron CG7337 + chr2L 1908142 intron CG7337 + chr2L 1908207 intron CG7337 + chr2L_5_1905001 chr2L_1905001 RAL-461 53 chr2L 1910673 1910697 chr2L 1910818 1910860 4 158 2.0 4.0 3.0 1.0 187 chr2L 1910673 intron CG7337 + chr2L 1910766 intron CG7337 + chr2L 1910860 intron CG7337 + chr2L_4_1910001 chr2L_1910001 RAL-461 54 chr2L 2007845 2007870 chr2L 2007973 2007998 6 128 4.5 6.5 5.5 0.9 153 chr2L 2007845 intergenic CR45712 + chr2L 2007922 intergenic CR45712 +,Nplp4 + chr2L 2007998 intergenic CR45712 +,Nplp4 + chr2L_6_2005001 chr2L_2005001 RAL-461 55 chr2L 2047798 2047832 chr2L 2047998 2048007 5 204 2.5 0.0 1.2 2.3 209 chr2L 2047798 3` UTR Kebab + chr2L 2047902 3` UTR Kebab + chr2L 2048007 3` UTR Kebab + chr2L_5_2045001 chr2L_2045001 RAL-461 56 chr2L 2084404 2084422 chr2L 2085371 2085383 6 964 3.0 4.5 3.8 1.2 979 chr2L 2084404 intron,5` UTR dpr3 -,CR44055 + chr2L 2084894 intron dpr3 - chr2L 2085383 intron dpr3 - chr2L_6_2080001 chr2L_2080001 RAL-461 57 chr2L 2100381 2100406 chr2L 2109525 2109551 roo 9 9155 4.5 5.5 5.0 1.5 9170 chr2L 2100381 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-461 58 chr2L 2133649 2133696 chr2L 2133754 2133808 10 104 5.0 2.5 3.8 2.1 159 chr2L 2133649 intron GlyP + chr2L 2133728 intron GlyP + chr2L 2133808 intron GlyP + chr2L_10_2130001 chr2L_2130001 RAL-461 59 chr2L 2186935 2186960 chr2L 2187011 2187019 6 74 3.0 4.0 3.5 1.3 84 chr2L 2186935 intergenic CR44066 - chr2L 2186977 3` UTR CR44066 - chr2L 2187019 3` UTR CR44066 - chr2L_6_2185001 chr2L_2185001 RAL-461 60 chr2L 2290573 2290616 chr2L 2290669 2290704 5 88 1.0 2.5 1.8 1.8 131 chr2L 2290573 exon robl22E - chr2L 2290638 5` UTR robl22E - chr2L 2290704 5` UTR robl22E - chr2L_5_2290001 chr2L_2290001 RAL-461 61 chr2L 2399380 2399407 chr2L 2399487 2399509 8 113 1.5 1.5 1.5 3.2 129 chr2L 2399380 intron VGlut + chr2L 2399444 intron VGlut + chr2L 2399509 intron VGlut + chr2L_8_2395001 chr2L_2395001 RAL-461 62 chr2L 2498216 2498220 chr2L 2498271 2498297 4 71 3.5 4.5 4.0 0.8 81 chr2L 2498216 3` UTR oaf + chr2L 2498256 3` UTR oaf + chr2L 2498297 3` UTR oaf + chr2L_4_2495001 chr2L_2495001 RAL-461 63 chr2L 2504207 2504238 chr2L 2504305 2504336 11 98 3.0 7.0 5.0 1.8 129 chr2L 2504207 intergenic not near genes chr2L 2504272 intergenic not near genes chr2L 2504336 intergenic not near genes chr2L_11_2500001 chr2L_2500001 RAL-461 64 chr2L 2557204 2557218 chr2L 2557285 2557314 7 92 7.0 6.0 6.5 0.9 110 chr2L 2557204 intergenic not near genes chr2L 2557259 intergenic not near genes chr2L 2557314 intergenic not near genes chr2L_7_2555001 chr2L_2555001 RAL-461 65 chr2L 2565530 2565559 chr2L 2571614 2571646 297 5 6085 3.0 3.5 3.2 1.2 6116 chr2L 2565530 exon Cyp309a2 - chr2L 2568588 intron Cyp309a2 - chr2L 2571646 intron Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-461 66 chr2L 2667604 2667633 chr2L 2667703 2667732 6 96 6.5 3.0 4.8 1.0 128 chr2L 2667604 intergenic not near genes chr2L 2667668 intergenic not near genes chr2L 2667732 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-461 67 chr2L 2698862 2698894 chr2L 2698953 2698974 14 100 0.0 1.0 0.5 9.3 112 chr2L 2698862 intron CG31690 + chr2L 2698918 intron CG31690 + chr2L 2698974 intron CG31690 + chr2L_14_2695001 chr2L_2695001 RAL-461 68 chr2L 2715682 2715698 chr2L 2715776 2715794 5 96 3.5 6.5 5.0 0.8 112 chr2L 2715682 intron CG31690 + chr2L 2715738 intron CG31690 + chr2L 2715794 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-461 69 chr2L 2772599 2772625 chr2L 2779203 2779229 297 4 6604 2.0 5.5 3.8 0.8 6630 chr2L 2772599 3` UTR Syt1 - chr2L 2775914 intron Syt1 - chr2L 2779229 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-461 70 chr2L 2885359 2885376 chr2L 2885454 2885473 7 95 6.0 5.5 5.8 1.0 114 chr2L 2885359 intron NTPase - chr2L 2885416 intron NTPase - chr2L 2885473 intron NTPase - chr2L_7_2885001 chr2L_2885001 RAL-461 71 chr2L 2933321 2933331 chr2L 2935480 2935528 pogo 4 2188 1.5 2.0 1.8 1.4 2207 chr2L 2933321 intron lilli + chr2L 2934424 intron lilli + chr2L 2935528 intron lilli + chr2L_4_2930001 chr2L_2930001 RAL-461 72 chr2L 3073013 3073017 chr2L 3078236 3078240 copia 4 5223 13.5 2.5 8.0 0.4 5227 chr2L 3073013 intron toc - chr2L 3075626 intron toc - chr2L 3078240 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-461 73 chr2L 3073033 3073053 chr2L 3078233 3078250 copia 8 5213 7.5 2.5 5.0 1.3 5217 chr2L 3073033 intron toc - chr2L 3075642 intron toc - chr2L 3078250 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-461 74 chr2L 3108854 3108882 chr2L 3108951 3108964 8 92 4.0 3.0 3.5 1.8 110 chr2L 3108854 exon toc - chr2L 3108909 intron toc - chr2L 3108964 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-461 75 chr2L 3147268 3147303 chr2L 3147364 3147378 6 89 4.5 2.5 3.5 1.3 110 chr2L 3147268 3` UTR Mad - chr2L 3147323 3` UTR Mad - chr2L 3147378 3` UTR Mad - chr2L_6_3145001 chr2L_3145001 RAL-461 76 chr2L 3202721 3202772 chr2L 3210170 3210221 mdg1 16 7445 5.0 9.0 7.0 2.0 7500 chr2L 3202721 intergenic not near genes chr2L 3206471 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_16_3205001 chr2L_3205001 RAL-461 77 chr2L 3251488 3251497 chr2L 3259061 3259082 springer 6 7582 5.5 3.0 4.2 1.2 7594 chr2L 3251488 intergenic not near genes chr2L 3255285 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-461 78 chr2L 3251505 3251522 chr2L 3259059 3259107 springer 7 7580 2.5 3.0 2.8 1.8 7602 chr2L 3251505 intergenic not near genes chr2L 3255306 intergenic not near genes chr2L 3259107 intergenic not near genes chr2L_7_3255001 chr2L_3255001 RAL-461 79 chr2L 3312077 3312116 chr2L 3312185 3312214 8 117 0.0 0.5 0.2 6.7 137 chr2L 3312077 intron CG3277 + chr2L 3312146 intron CG3277 + chr2L 3312214 intron CG3277 + chr2L_8_3310001 chr2L_3310001 RAL-461 80 chr2L 3388583 3388630 chr2L 3388844 3388891 pogo 12 257 1.0 3.0 2.0 4.0 308 chr2L 3388583 intergenic CG42460 - chr2L 3388737 intergenic CG42460 - chr2L 3388891 intergenic CG42460 -,CR44791 + chr2L_12_3385001 chr2L_3385001 RAL-461 81 chr2L 3395014 3395029 chr2L 3395109 3395131 7 101 4.0 0.5 2.2 2.2 117 chr2L 3395014 intergenic not near genes chr2L 3395072 intergenic not near genes chr2L 3395131 intergenic not near genes chr2L_7_3395001 chr2L_3395001 RAL-461 82 chr2L 3442995 3443017 chr2L 3443203 3443225 7 208 7.5 4.0 5.8 1.0 230 chr2L 3442995 intergenic not near genes chr2L 3443110 intergenic not near genes chr2L 3443225 intergenic not near genes chr2L_7_3440001 chr2L_3440001 RAL-461 83 chr2L 3584683 3584700 chr2L 3584780 3584797 5 96 8.0 7.0 7.5 0.6 114 chr2L 3584683 intergenic not near genes chr2L 3584740 intergenic not near genes chr2L 3584797 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-461 84 chr2L 3632258 3632272 chr2L 3632349 3632369 4 96 0.0 10.0 5.0 0.7 111 chr2L 3632258 intron for - chr2L 3632314 intron for - chr2L 3632369 intron for - chr2L_4_3630001 chr2L_3630001 RAL-461 85 chr2L 3659770 3659795 chr2L 3659869 3659894 4 96 2.0 2.0 2.0 1.3 124 chr2L 3659770 intergenic not near genes chr2L 3659832 intergenic not near genes chr2L 3659894 intergenic not near genes chr2L_4_3655001 chr2L_3655001 RAL-461 86 chr2L 3667945 3667965 chr2L 3668131 3668151 4 186 5.0 3.0 4.0 0.8 206 chr2L 3667945 intron CG34340 + chr2L 3668048 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668151 intron,exon CG34340 +,Sfp24Ba - chr2L_4_3665001 chr2L_3665001 RAL-461 87 chr2L 3686038 3686054 chr2L 3686131 3686161 8 104 5.0 7.5 6.2 1.1 123 chr2L 3686038 intron CG34340 + chr2L 3686100 intron CG34340 + chr2L 3686161 intron CG34340 + chr2L_8_3685001 chr2L_3685001 RAL-461 88 chr2L 3693799 3693808 chr2L 3693904 3693909 4 102 0.5 4.5 2.5 1.1 110 chr2L 3693799 exon Acp24A4 - chr2L 3693854 exon Acp24A4 - chr2L 3693909 intergenic Acp24A4 - chr2L_4_3690001 chr2L_3690001 RAL-461 89 chr2L 3693818 3693849 chr2L 3693901 3693954 15 91 1.0 4.0 2.5 4.3 136 chr2L 3693818 exon Acp24A4 - chr2L 3693886 5` UTR Acp24A4 - chr2L 3693954 intergenic Acp24A4 -,CG43165 - chr2L_15_3690001 chr2L_3690001 RAL-461 90 chr2L 3790346 3790390 chr2L 3790465 3790509 8 118 1.5 3.5 2.5 2.3 163 chr2L 3790346 intron CG3921 + chr2L 3790428 intron CG3921 + chr2L 3790509 intron CG3921 + chr2L_8_3790001 chr2L_3790001 RAL-461 91 chr2L 3819023 3819059 chr2L 3819116 3819160 5 100 3.0 0.0 1.5 2.0 137 chr2L 3819023 intergenic CR44077 + chr2L 3819092 intergenic not near genes chr2L 3819160 intergenic not near genes chr2L_5_3815001 chr2L_3815001 RAL-461 92 chr2L 3831834 3831861 chr2L 3831929 3831962 12 96 4.5 4.0 4.2 2.3 128 chr2L 3831834 intergenic not near genes chr2L 3831898 intergenic not near genes chr2L 3831962 intergenic not near genes chr2L_12_3830001 chr2L_3830001 RAL-461 93 chr2L 3896296 3896323 chr2L 3896395 3896407 5 95 2.5 0.0 1.2 2.3 111 chr2L 3896296 intron capu - chr2L 3896352 intron capu - chr2L 3896407 intron capu - chr2L_5_3895001 chr2L_3895001 RAL-461 94 chr2L 3936637 3936656 chr2L 3936737 3936756 6 98 3.0 5.0 4.0 1.2 119 chr2L 3936637 intron fred - chr2L 3936696 intron fred - chr2L 3936756 intron fred - chr2L_6_3935001 chr2L_3935001 RAL-461 95 chr2L 3943775 3943817 chr2L 3943886 3943928 11 110 5.5 3.0 4.2 2.1 153 chr2L 3943775 intron fred - chr2L 3943852 intron fred - chr2L 3943928 intron fred - chr2L_11_3940001 chr2L_3940001 RAL-461 96 chr2L 3988671 3988717 chr2L 3988810 3988839 6 131 2.5 1.0 1.8 2.1 168 chr2L 3988671 intron fred - chr2L 3988755 intron fred - chr2L 3988839 intron fred - chr2L_6_3985001 chr2L_3985001 RAL-461 97 chr2L 4014634 4014682 chr2L 4014797 4014840 13 161 2.5 5.0 3.8 2.7 206 chr2L 4014634 intergenic not near genes chr2L 4014737 intergenic not near genes chr2L 4014840 intergenic not near genes chr2L_13_4010001 chr2L_4010001 RAL-461 98 chr2L 4037780 4037806 chr2L 4037887 4037903 6 105 7.5 3.5 5.5 0.9 123 chr2L 4037780 intron ed + chr2L 4037842 intron ed + chr2L 4037903 intron ed + chr2L_6_4035001 chr2L_4035001 RAL-461 99 chr2L 4038489 4038528 chr2L 4038778 4038797 8 287 5.0 5.0 5.0 1.3 308 chr2L 4038489 intron ed + chr2L 4038643 intron ed + chr2L 4038797 intron ed + chr2L_8_4035001 chr2L_4035001 RAL-461 100 chr2L 4047067 4047079 chr2L 4047395 4047412 4 330 1.0 2.0 1.5 1.6 345 chr2L 4047067 intron ed + chr2L 4047240 intron ed + chr2L 4047412 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-461 101 chr2L 4054538 4054578 chr2L 4054647 4054677 11 108 2.0 4.5 3.2 2.6 139 chr2L 4054538 intron ed + chr2L 4054608 intron ed + chr2L 4054677 intron ed + chr2L_11_4050001 chr2L_4050001 RAL-461 102 chr2L 4060163 4060199 chr2L 4060244 4060295 11 91 4.0 3.5 3.8 2.3 132 chr2L 4060163 intron ed + chr2L 4060229 intron ed + chr2L 4060295 intron ed + chr2L_11_4060001 chr2L_4060001 RAL-461 103 chr2L 4066036 4066060 chr2L 4068871 4068879 Juan 6 2834 3.0 1.5 2.2 1.9 2843 chr2L 4066036 intron ed + chr2L 4067458 intron ed + chr2L 4068879 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-461 104 chr2L 4173880 4173907 chr2L 4174333 4174360 9 452 2.5 4.0 3.2 2.1 480 chr2L 4173880 intergenic not near genes chr2L 4174120 intergenic not near genes chr2L 4174360 intergenic not near genes chr2L_9_4170001 chr2L_4170001 RAL-461 105 chr2L 4181296 4181305 chr2L 4183940 4183951 Burdock 4 2648 4.5 1.0 2.8 1.1 2655 chr2L 4181296 intergenic not near genes chr2L 4182624 intergenic not near genes chr2L 4183951 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-461 106 chr2L 4184463 4184506 chr2L 4184801 4184845 8 339 1.0 4.5 2.8 2.1 382 chr2L 4184463 intergenic not near genes chr2L 4184654 intergenic not near genes chr2L 4184845 intergenic not near genes chr2L_8_4180001 chr2L_4180001 RAL-461 107 chr2L 4192971 4193017 chr2L 4193067 4193118 12 98 1.0 7.0 4.0 2.4 147 chr2L 4192971 intron CG3714 - chr2L 4193044 intron CG3714 - chr2L 4193118 intron CG3714 - chr2L_12_4190001 chr2L_4190001 RAL-461 108 chr2L 4351475 4351500 chr2L 4351548 4351584 6 71 2.0 0.0 1.0 3.0 109 chr2L 4351475 intergenic CR44700 + chr2L 4351530 intergenic CR44700 + chr2L 4351584 intergenic CR44700 + chr2L_6_4350001 chr2L_4350001 RAL-461 109 chr2L 4601682 4601731 chr2L 4609143 4609180 mdg1 11 7453 3.0 3.5 3.2 2.6 7498 chr2L 4601682 intron dp - chr2L 4605431 intron dp - chr2L 4609180 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-461 110 chr2L 4661827 4661858 chr2L 4669427 4669448 opus 7 7597 2.0 5.5 3.8 1.5 7621 chr2L 4661827 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669448 intergenic not near genes chr2L_7_4665001 chr2L_4665001 RAL-461 111 chr2L 4681294 4681313 chr2L 4681552 4681585 4 272 2.0 3.0 2.5 1.1 291 chr2L 4681294 intergenic not near genes chr2L 4681440 intergenic not near genes chr2L 4681585 intergenic not near genes chr2L_4_4680001 chr2L_4680001 RAL-461 112 chr2L 4748673 4748723 chr2L 4748772 4748772 11 91 4.5 6.5 5.5 1.7 99 chr2L 4748673 intron CG15630 - chr2L 4748722 intron CG15630 - chr2L 4748772 intron CG15630 - chr2L_11_4745001 chr2L_4745001 RAL-461 113 chr2L 4858450 4858483 chr2L 4858558 4858591 20 106 3.5 0.5 2.0 6.7 141 chr2L 4858450 intron pog + chr2L 4858520 intron pog + chr2L 4858591 intron pog + chr2L_20_4855001 chr2L_4855001 RAL-461 114 chr2L 4869452 4869499 chr2L 4869552 4869599 7 98 4.5 4.0 4.2 1.3 147 chr2L 4869452 intron pog + chr2L 4869526 intron pog + chr2L 4869599 intron pog + chr2L_7_4865001 chr2L_4865001 RAL-461 115 chr2L 4918153 4918191 chr2L 4923246 4923322 jockey 4 5100 6.0 1.0 3.5 0.9 5169 chr2L 4918153 intron hoe1 - chr2L 4920738 intron hoe1 - chr2L 4923322 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-461 116 chr2L 4923249 4923254 chr2L 4923358 4923363 4 109 0.0 3.5 1.8 1.4 114 chr2L 4923249 intron hoe1 - chr2L 4923306 intron hoe1 - chr2L 4923363 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-461 117 chr2L 4925653 4925696 chr2L 4925752 4925795 5 99 4.5 0.5 2.5 1.4 142 chr2L 4925653 intron hoe1 - chr2L 4925724 intron hoe1 - chr2L 4925795 intron hoe1 - chr2L_5_4925001 chr2L_4925001 RAL-461 118 chr2L 4953504 4953540 chr2L 4953757 4953796 pogo 6 259 2.0 5.0 3.5 1.3 292 chr2L 4953504 intergenic Jon25Bii - chr2L 4953650 intergenic not near genes chr2L 4953796 intergenic Jon25Bi - chr2L_6_4950001 chr2L_4950001 RAL-461 119 chr2L 5025117 5025130 chr2L 5025213 5025219 4 92 13.0 0.5 6.8 0.5 102 chr2L 5025117 intron vkg - chr2L 5025168 intron vkg - chr2L 5025219 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-461 120 chr2L 5025146 5025158 chr2L 5025212 5025254 6 91 8.0 0.5 4.2 1.2 108 chr2L 5025146 intron vkg - chr2L 5025200 intron vkg - chr2L 5025254 intron vkg - chr2L_6_5025001 chr2L_5025001 RAL-461 121 chr2L 5040668 5040705 chr2L 5040784 5040821 12 114 5.5 4.5 5.0 2.0 153 chr2L 5040668 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040744 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040821 3` UTR CG31650 - chr2L_12_5040001 chr2L_5040001 RAL-461 122 chr2L 5040708 5040714 chr2L 5040780 5040809 6 105 4.5 4.5 4.5 1.1 101 chr2L 5040708 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040758 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040809 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_6_5040001 chr2L_5040001 RAL-461 123 chr2L 5083732 5083775 chr2L 5083827 5083871 10 90 1.5 3.0 2.2 3.1 139 chr2L 5083732 intron pgant5 - chr2L 5083802 intron pgant5 - chr2L 5083871 intron pgant5 - chr2L_10_5080001 chr2L_5080001 RAL-461 124 chr2L 5085025 5085031 chr2L 5085137 5085143 4 112 4.5 6.0 5.2 0.6 118 chr2L 5085025 intron pgant5 - chr2L 5085084 intron pgant5 - chr2L 5085143 intron pgant5 - chr2L_4_5085001 chr2L_5085001 RAL-461 125 chr2L 5117277 5117323 chr2L 5117379 5117425 18 97 6.0 5.0 5.5 2.8 148 chr2L 5117277 intron Msp300 + chr2L 5117351 intron Msp300 + chr2L 5117425 intron Msp300 + chr2L_18_5115001 chr2L_5115001 RAL-461 126 chr2L 5342759 5342791 chr2L 5345159 5345191 Doc 12 2398 2.5 4.0 3.2 2.9 2432 chr2L 5342759 intergenic not near genes chr2L 5343975 intergenic not near genes chr2L 5345191 intergenic not near genes chr2L_12_5340001 chr2L_5340001 RAL-461 127 chr2L 5396376 5396386 chr2L 5396485 5396495 6 109 2.0 1.5 1.8 2.1 119 chr2L 5396376 intergenic not near genes chr2L 5396436 intergenic not near genes chr2L 5396495 intergenic not near genes chr2L_6_5395001 chr2L_5395001 RAL-461 128 chr2L 5397091 5397098 chr2L 5397192 5397199 4 101 2.5 3.5 3.0 1.0 108 chr2L 5397091 intergenic not near genes chr2L 5397145 intergenic not near genes chr2L 5397199 intergenic not near genes chr2L_4_5395001 chr2L_5395001 RAL-461 129 chr2L 5397099 5397134 chr2L 5397186 5397215 10 96 1.5 2.5 2.0 3.3 116 chr2L 5397099 intergenic not near genes chr2L 5397157 intergenic not near genes chr2L 5397215 intergenic not near genes chr2L_10_5395001 chr2L_5395001 RAL-461 130 chr2L 5475140 5475157 chr2L 5475265 5475277 4 124 1.5 4.0 2.8 1.1 137 chr2L 5475140 intergenic not near genes chr2L 5475208 intergenic not near genes chr2L 5475277 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-461 131 chr2L 5500044 5500068 chr2L 5500150 5500174 6 106 6.0 4.0 5.0 1.0 130 chr2L 5500044 intergenic not near genes chr2L 5500109 intergenic not near genes chr2L 5500174 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-461 132 chr2L 5508523 5508561 chr2L 5508613 5508657 8 94 3.5 4.5 4.0 1.6 134 chr2L 5508523 intergenic not near genes chr2L 5508590 intergenic not near genes chr2L 5508657 intergenic not near genes chr2L_8_5505001 chr2L_5505001 RAL-461 133 chr2L 5563670 5563693 chr2L 5563774 5563794 4 103 10.5 5.5 8.0 0.4 124 chr2L 5563670 intergenic GluRIIB + chr2L 5563732 intergenic GluRIIB + chr2L 5563794 intergenic GluRIIB + chr2L_4_5560001 chr2L_5560001 RAL-461 134 chr2L 5649915 5649934 chr2L 5650521 5650540 6 606 0.0 3.0 1.5 2.4 625 chr2L 5649915 intron CG31646 - chr2L 5650228 intron CG31646 - chr2L 5650540 intron CG31646 - chr2L_6_5650001 chr2L_5650001 RAL-461 135 chr2L 5668604 5668611 chr2L 5668680 5668709 4 86 0.0 2.5 1.2 1.8 105 chr2L 5668604 intron Hsp60C + chr2L 5668656 intron Hsp60C + chr2L 5668709 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-461 136 chr2L 5691868 5691891 chr2L 5692134 5692157 5 264 4.0 2.0 3.0 1.2 289 chr2L 5691868 intergenic CR44819 +,CR44820 - chr2L 5692012 intergenic CR44819 + chr2L 5692157 intergenic CR44819 + chr2L_5_5690001 chr2L_5690001 RAL-461 137 chr2L 5695847 5695892 chr2L 5695954 5696004 14 109 4.5 6.5 5.5 2.2 157 chr2L 5695847 intergenic not near genes chr2L 5695926 intergenic not near genes chr2L 5696004 intergenic not near genes chr2L_14_5695001 chr2L_5695001 RAL-461 138 chr2L 5805933 5805954 chr2L 5806170 5806185 9 234 5.0 4.0 4.5 1.6 252 chr2L 5805933 intron CG11034 + chr2L 5806059 intron CG11034 + chr2L 5806185 intron CG11034 + chr2L_9_5805001 chr2L_5805001 RAL-461 139 chr2L 5805955 5805985 chr2L 5806167 5806222 4 224 3.5 4.0 3.8 0.8 267 chr2L 5805955 intron CG11034 + chr2L 5806088 intron CG11034 + chr2L 5806222 intron CG11034 + chr2L_4_5805001 chr2L_5805001 RAL-461 140 chr2L 5814671 5814714 chr2L 5814774 5814816 9 100 4.5 6.0 5.2 1.5 145 chr2L 5814671 intergenic not near genes chr2L 5814744 intergenic not near genes chr2L 5814816 intergenic not near genes chr2L_9_5810001 chr2L_5810001 RAL-461 141 chr2L 5819652 5819700 chr2L 5819756 5819778 11 96 3.0 2.0 2.5 3.1 126 chr2L 5819652 intergenic not near genes chr2L 5819715 intergenic not near genes chr2L 5819778 intergenic not near genes chr2L_11_5815001 chr2L_5815001 RAL-461 142 chr2L 5827702 5827740 chr2L 5836724 5836746 roo 8 9020 4.5 5.5 5.0 1.3 9044 chr2L 5827702 intron TrissinR + chr2L 5832224 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-461 143 chr2L 5839145 5839179 chr2L 5839254 5839277 4 101 1.5 1.5 1.5 1.6 132 chr2L 5839145 intron TrissinR + chr2L 5839211 intron TrissinR + chr2L 5839277 intron TrissinR + chr2L_4_5835001 chr2L_5835001 RAL-461 144 chr2L 5839181 5839195 chr2L 5839250 5839273 7 81 1.5 1.0 1.2 3.2 92 chr2L 5839181 intron TrissinR + chr2L 5839227 intron TrissinR + chr2L 5839273 intron TrissinR + chr2L_7_5835001 chr2L_5835001 RAL-461 145 chr2L 5863376 5863419 chr2L 5863681 5863715 9 291 2.5 3.5 3.0 2.2 339 chr2L 5863376 intron rau - chr2L 5863546 intron rau - chr2L 5863715 intron rau - chr2L_9_5860001 chr2L_5860001 RAL-461 146 chr2L 5897572 5897624 chr2L 5897675 5897727 19 95 5.5 5.0 5.2 3.1 155 chr2L 5897572 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897727 intergenic not near genes chr2L_19_5895001 chr2L_5895001 RAL-461 147 chr2L 5926249 5926452 chr2L 5926349 5926560 5 143 0.0 0.0 0.0 5.0 311 chr2L 5926249 intron dsf + chr2L 5926404 intron dsf + chr2L 5926560 intron dsf + chr2L_5_5925001 chr2L_5925001 RAL-461 148 chr2L 5936009 5936024 chr2L 5936117 5936132 7 107 1.5 1.5 1.5 2.8 123 chr2L 5936009 intron dsf + chr2L 5936070 intron dsf + chr2L 5936132 intron dsf + chr2L_7_5935001 chr2L_5935001 RAL-461 149 chr2L 5942009 5942053 chr2L 5942121 5942165 7 106 4.0 1.5 2.8 1.8 156 chr2L 5942009 5` UTR CR45289 + chr2L 5942087 5` UTR CR45289 + chr2L 5942165 5` UTR CR45289 + chr2L_7_5940001 chr2L_5940001 RAL-461 150 chr2L 5989013 5989046 chr2L 5989109 5989113 12 88 11.5 3.0 7.2 1.5 100 chr2L 5989013 intergenic ifc +,lid - chr2L 5989063 intergenic ifc +,lid - chr2L 5989113 intergenic ifc +,lid - chr2L_12_5985001 chr2L_5985001 RAL-461 151 chr2L 5993314 5993360 chr2L 5993425 5993471 15 111 1.0 2.0 1.5 6.0 157 chr2L 5993314 exon lid - chr2L 5993392 intron lid - chr2L 5993471 exon lid - chr2L_15_5990001 chr2L_5990001 RAL-461 152 chr2L 6050428 6050449 chr2L 6050552 6050573 5 122 3.0 2.5 2.8 1.3 145 chr2L 6050428 3` UTR CG12393 + chr2L 6050500 intergenic CG12393 +,CG9135 + chr2L 6050573 intergenic CG12393 +,CG9135 + chr2L_5_6050001 chr2L_6050001 RAL-461 153 chr2L 6157275 6157285 chr2L 6157371 6157394 5 106 1.0 9.5 5.2 0.8 119 chr2L 6157275 intergenic not near genes chr2L 6157334 intergenic not near genes chr2L 6157394 intergenic not near genes chr2L_5_6155001 chr2L_6155001 RAL-461 154 chr2L 6157286 6157300 chr2L 6157370 6157406 5 96 1.0 9.5 5.2 0.8 120 chr2L 6157286 intergenic not near genes chr2L 6157346 intergenic not near genes chr2L 6157406 intergenic not near genes chr2L_5_6155001 chr2L_6155001 RAL-461 155 chr2L 6185426 6185436 chr2L 6185524 6185525 4 93 6.0 6.5 6.2 0.6 99 chr2L 6185426 intron CG34380 + chr2L 6185476 intron CG34380 + chr2L 6185525 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-461 156 chr2L 6185439 6185469 chr2L 6185517 6185560 10 86 3.5 6.5 5.0 1.7 121 chr2L 6185439 intron CG34380 + chr2L 6185500 intron CG34380 + chr2L 6185560 intron CG34380 + chr2L_10_6185001 chr2L_6185001 RAL-461 157 chr2L 6296407 6296435 chr2L 6296508 6296547 4 108 2.5 3.0 2.8 1.1 140 chr2L 6296407 intron Ddr + chr2L 6296477 intron Ddr + chr2L 6296547 intron Ddr + chr2L_4_6295001 chr2L_6295001 RAL-461 158 chr2L 6343672 6343682 chr2L 6343967 6343976 5 294 21.0 21.5 21.2 0.2 304 chr2L 6343672 intron Cpr + chr2L 6343824 intron Cpr + chr2L 6343976 intron Cpr + chr2L_5_6340001 chr2L_6340001 RAL-461 159 chr2L 6343669 6343670 chr2L 6343978 6343984 4 306 18.5 19.5 19.0 0.2 315 chr2L 6343669 intron Cpr + chr2L 6343826 intron Cpr + chr2L 6343984 intron Cpr + chr2L_4_6340001 chr2L_6340001 RAL-461 160 chr2L 6426851 6426884 chr2L 6445131 6445164 roo 7 18280 7.5 6.0 6.8 0.9 18313 chr2L 6426851 3` UTR CG9527 - chr2L 6436008 intron CG9527 - chr2L 6445164 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-461 161 chr2L 6544355 6544388 chr2L 6544467 6544499 13 112 3.5 2.5 3.0 3.2 144 chr2L 6544355 intron eya - chr2L 6544427 intron eya - chr2L 6544499 intron eya - chr2L_13_6540001 chr2L_6540001 RAL-461 162 chr2L 6544389 6544393 chr2L 6544465 6544505 4 103 3.5 2.0 2.8 1.1 116 chr2L 6544389 intron eya - chr2L 6544447 intron eya - chr2L 6544505 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-461 163 chr2L 6626867 6626906 chr2L 6626972 6626999 10 100 7.0 2.0 4.5 1.8 132 chr2L 6626867 intron Oatp26F - chr2L 6626933 intron Oatp26F - chr2L 6626999 intron Oatp26F - chr2L_10_6625001 chr2L_6625001 RAL-461 164 chr2L 6655508 6655533 chr2L 6655890 6655895 4 371 1.5 6.0 3.8 0.8 387 chr2L 6655508 exon CG31633 - chr2L 6655702 exon CG31633 - chr2L 6655895 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-461 165 chr2L 6728744 6728764 chr2L 6728848 6728853 7 102 1.0 3.0 2.0 2.3 109 chr2L 6728744 exon Liprin-alpha + chr2L 6728798 intron Liprin-alpha + chr2L 6728853 intron Liprin-alpha + chr2L_7_6725001 chr2L_6725001 RAL-461 166 chr2L 6793835 6793849 chr2L 6793970 6794011 5 148 2.5 0.5 1.5 2.0 176 chr2L 6793835 intron nrv2 - chr2L 6793923 intron nrv2 - chr2L 6794011 intron nrv2 - chr2L_5_6790001 chr2L_6790001 RAL-461 167 chr2L 6850360 6850407 chr2L 6850463 6850486 14 96 4.5 0.5 2.5 4.0 126 chr2L 6850360 intergenic not near genes chr2L 6850423 intergenic not near genes chr2L 6850486 intergenic not near genes chr2L_14_6850001 chr2L_6850001 RAL-461 168 chr2L 6964060 6964096 chr2L 6964165 6964201 10 104 1.0 2.0 1.5 4.0 141 chr2L 6964060 5` UTR sip2 - chr2L 6964130 intergenic sip2 -,Coprox + chr2L 6964201 intergenic sip2 -,Coprox + chr2L_10_6960001 chr2L_6960001 RAL-461 169 chr2L 7030083 7030100 chr2L 7030160 7030201 8 91 5.0 2.5 3.8 1.7 118 chr2L 7030083 intergenic Rab30 - chr2L 7030142 intergenic Rab30 - chr2L 7030201 intergenic Rab30 - chr2L_8_7030001 chr2L_7030001 RAL-461 170 chr2L 7042054 7042088 chr2L 7042163 7042197 8 109 2.0 2.5 2.2 2.5 143 chr2L 7042054 intron milt + chr2L 7042126 intron milt + chr2L 7042197 intron milt + chr2L_8_7040001 chr2L_7040001 RAL-461 171 chr2L 7088888 7088899 chr2L 7089109 7089120 4 221 0.5 0.5 0.5 2.7 232 chr2L 7088888 intergenic not near genes chr2L 7089004 intergenic not near genes chr2L 7089120 intergenic not near genes chr2L_4_7085001 chr2L_7085001 RAL-461 172 chr2L 7125787 7125810 chr2L 7125912 7125946 4 130 3.0 2.5 2.8 1.1 159 chr2L 7125787 intron Pvf3 - chr2L 7125866 intron Pvf3 - chr2L 7125946 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-461 173 chr2L 7126840 7126877 chr2L 7126939 7126975 14 99 6.0 0.0 3.0 3.5 135 chr2L 7126840 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126975 intron Pvf3 - chr2L_14_7125001 chr2L_7125001 RAL-461 174 chr2L 7149975 7150012 chr2L 7150095 7150132 6 120 3.0 4.0 3.5 1.3 157 chr2L 7149975 intron Pvf3 - chr2L 7150054 intron Pvf3 - chr2L 7150132 intron Pvf3 - chr2L_6_7150001 chr2L_7150001 RAL-461 175 chr2L 7169691 7169696 chr2L 7169817 7169822 4 126 0.0 1.0 0.5 2.7 131 chr2L 7169691 intergenic not near genes chr2L 7169756 intergenic not near genes chr2L 7169822 intergenic not near genes chr2L_4_7165001 chr2L_7165001 RAL-461 176 chr2L 7247509 7247521 chr2L 7247596 7247604 4 91 3.0 9.5 6.2 0.6 95 chr2L 7247509 intron Ndae1 - chr2L 7247556 intron Ndae1 - chr2L 7247604 intron Ndae1 - chr2L_4_7245001 chr2L_7245001 RAL-461 177 chr2L 7295997 7296014 chr2L 7296135 7296172 4 153 2.5 1.0 1.8 1.4 175 chr2L 7295997 intergenic not near genes chr2L 7296084 intergenic not near genes chr2L 7296172 intergenic not near genes chr2L_4_7295001 chr2L_7295001 RAL-461 178 chr2L 7335183 7335235 chr2L 7335300 7335352 12 116 3.5 2.5 3.0 3.0 169 chr2L 7335183 intron Wnt6 + chr2L 7335268 intron Wnt6 + chr2L 7335352 intron Wnt6 + chr2L_12_7335001 chr2L_7335001 RAL-461 179 chr2L 7399297 7399333 chr2L 7399680 7399726 7 389 2.0 3.0 2.5 2.0 429 chr2L 7399297 intergenic not near genes chr2L 7399512 intergenic not near genes chr2L 7399726 intergenic not near genes chr2L_7_7395001 chr2L_7395001 RAL-461 180 chr2L 7489700 7489726 chr2L 7489784 7489805 6 93 7.0 5.5 6.2 0.8 105 chr2L 7489700 intron Ziz - chr2L 7489752 intron Ziz - chr2L 7489805 intron Ziz - chr2L_6_7485001 chr2L_7485001 RAL-461 181 chr2L 7516334 7516360 chr2L 7516450 7516475 7 122 1.5 4.0 2.8 1.8 141 chr2L 7516334 intron RapGAP1 - chr2L 7516404 intron RapGAP1 - chr2L 7516475 intron RapGAP1 - chr2L_7_7515001 chr2L_7515001 RAL-461 182 chr2L 7555197 7555221 chr2L 7555294 7555315 7 94 0.5 3.5 2.0 2.3 118 chr2L 7555197 intron RapGAP1 - chr2L 7555256 intron RapGAP1 - chr2L 7555315 intron RapGAP1 - chr2L_7_7555001 chr2L_7555001 RAL-461 183 chr2L 7567467 7567505 chr2L 7567562 7567597 11 90 1.0 5.0 3.0 2.8 130 chr2L 7567467 intron RapGAP1 - chr2L 7567532 intron RapGAP1 - chr2L 7567597 intron RapGAP1 - chr2L_11_7565001 chr2L_7565001 RAL-461 184 chr2L 7579197 7579215 chr2L 7579408 7579426 BS 5 211 7.5 0.5 4.0 1.0 229 chr2L 7579197 intergenic RapGAP1 - chr2L 7579312 intergenic RapGAP1 - chr2L 7579426 intergenic RapGAP1 - chr2L_5_7575001 chr2L_7575001 RAL-461 185 chr2L 7765813 7765854 chr2L 7765911 7765925 5 84 3.5 0.5 2.0 1.7 112 chr2L 7765813 3` UTR CG7196 + chr2L 7765869 3` UTR CG7196 + chr2L 7765925 intergenic CG7196 + chr2L_5_7765001 chr2L_7765001 RAL-461 186 chr2L 7775614 7775664 chr2L 7775726 7775764 10 109 2.0 3.0 2.5 2.9 150 chr2L 7775614 intergenic CG7179 - chr2L 7775689 intergenic CG7179 - chr2L 7775764 intergenic CG7179 - chr2L_10_7775001 chr2L_7775001 RAL-461 187 chr2L 7922722 7922774 chr2L 7922823 7922862 16 96 6.0 4.0 5.0 2.7 140 chr2L 7922722 intron Snoo - chr2L 7922792 intron Snoo - chr2L 7922862 intron Snoo - chr2L_16_7920001 chr2L_7920001 RAL-461 188 chr2L 7961710 7961755 chr2L 7961798 7961850 8 93 5.0 5.5 5.2 1.3 140 chr2L 7961710 intron Snoo - chr2L 7961780 intron Snoo - chr2L 7961850 intron Snoo - chr2L_8_7960001 chr2L_7960001 RAL-461 189 chr2L 7997022 7997071 chr2L 7997139 7997188 15 115 6.0 4.0 5.0 2.5 166 chr2L 7997022 intron CG7227 - chr2L 7997105 intron CG7227 - chr2L 7997188 intron CG7227 - chr2L_15_7995001 chr2L_7995001 RAL-461 190 chr2L 8089695 8089711 chr2L 8105700 8105734 5 16017 14.0 12.0 13.0 0.4 16039 chr2L 8089695 exon Bsg + chr2L 8097714 intron Bsg + chr2L 8105734 exon Bsg + chr2L_5_8095001 chr2L_8095001 RAL-461 191 chr2L 8106947 8107153 chr2L 8107077 8107272 9 132 15.5 15.5 15.5 0.5 325 chr2L 8106947 exon Bsg + chr2L 8107110 exon Bsg + chr2L 8107272 exon Bsg + chr2L_9_8105001 chr2L_8105001 RAL-461 192 chr2L 8107374 8107419 chr2L 8107751 8107762 5 366 13.0 16.0 14.5 0.3 388 chr2L 8107374 exon Bsg + chr2L 8107568 intron Bsg + chr2L 8107762 exon Bsg + chr2L_5_8105001 chr2L_8105001 RAL-461 193 chr2L 8166035 8166046 chr2L 8166140 8166146 6 106 9.0 7.5 8.2 0.7 111 chr2L 8166035 intron Piezo + chr2L 8166090 intron Piezo + chr2L 8166146 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-461 194 chr2L 8166050 8166067 chr2L 8166135 8166151 6 96 2.0 6.0 4.0 1.2 101 chr2L 8166050 intron Piezo + chr2L 8166100 intron Piezo + chr2L 8166151 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-461 195 chr2L 8171276 8171300 chr2L 8171377 8171401 6 101 0.0 6.5 3.2 1.4 125 chr2L 8171276 intron Piezo + chr2L 8171338 intron Piezo + chr2L 8171401 intron Piezo + chr2L_6_8170001 chr2L_8170001 RAL-461 196 chr2L 8205601 8205616 chr2L 8205718 8205722 7 114 6.5 7.0 6.8 0.9 121 chr2L 8205601 3` UTR CR44120 - chr2L 8205662 intergenic CR44120 -,CR44121 -,CR44119 + chr2L 8205722 intergenic CR44121 -,CR44120 -,CR44119 +,CG8419 + chr2L_7_8205001 chr2L_8205001 RAL-461 197 chr2L 8266194 8266231 chr2L 8266348 8266384 12 154 1.5 4.5 3.0 3.0 190 chr2L 8266194 intron Btk29A - chr2L 8266289 intron Btk29A - chr2L 8266384 intron Btk29A - chr2L_12_8265001 chr2L_8265001 RAL-461 198 chr2L 8285007 8285035 chr2L 8285103 8285131 9 94 3.0 2.5 2.8 2.4 124 chr2L 8285007 intron Btk29A - chr2L 8285069 intron Btk29A - chr2L 8285131 intron Btk29A - chr2L_9_8285001 chr2L_8285001 RAL-461 199 chr2L 8452409 8452434 chr2L 8461600 8461619 roo 6 9188 6.5 7.0 6.8 0.8 9210 chr2L 8452409 intron fu12 - chr2L 8457014 intron fu12 - chr2L 8461619 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-461 200 chr2L 8452435 8452450 chr2L 8461598 8461626 roo 7 9180 4.0 6.5 5.2 1.1 9191 chr2L 8452435 intron fu12 - chr2L 8457030 intron fu12 - chr2L 8461626 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-461 201 chr2L 8502641 8502690 chr2L 8502745 8502793 7 104 4.5 3.0 3.8 1.5 152 chr2L 8502641 intron Dh31 - chr2L 8502717 intron Dh31 - chr2L 8502793 intron Dh31 - chr2L_7_8500001 chr2L_8500001 RAL-461 202 chr2L 8508975 8509002 chr2L 8509097 8509124 8 120 0.0 0.0 0.0 8.0 149 chr2L 8508975 intergenic CG13096 - chr2L 8509050 intergenic CG13096 - chr2L 8509124 3` UTR CG13096 - chr2L_8_8505001 chr2L_8505001 RAL-461 203 chr2L 8538144 8538164 chr2L 8538240 8538250 8 94 10.0 0.0 5.0 1.3 106 chr2L 8538144 intron CG17834 + chr2L 8538197 intron CG17834 + chr2L 8538250 intron CG17834 + chr2L_8_8535001 chr2L_8535001 RAL-461 204 chr2L 8594461 8594494 chr2L 8601524 8601563 297 6 7071 1.5 1.5 1.5 2.4 7102 chr2L 8594461 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598012 intron Sema-1a + chr2L 8601563 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-461 205 chr2L 8723095 8723132 chr2L 8731492 8731529 Tirant 10 8395 3.5 2.5 3.0 2.5 8434 chr2L 8723095 intron raw - chr2L 8727312 intron raw - chr2L 8731529 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-461 206 chr2L 8772771 8772818 chr2L 8772876 8772927 13 104 4.5 0.0 2.2 4.1 156 chr2L 8772771 intergenic CG9466 -,CG9465 - chr2L 8772849 intergenic CG9466 - chr2L 8772927 intergenic CG9466 - chr2L_13_8770001 chr2L_8770001 RAL-461 207 chr2L 8783975 8783996 chr2L 8784046 8784070 4 76 2.0 2.0 2.0 1.3 95 chr2L 8783975 intergenic not near genes chr2L 8784022 intergenic not near genes chr2L 8784070 intergenic not near genes chr2L_4_8780001 chr2L_8780001 RAL-461 208 chr2L 8784687 8784721 chr2L 8784818 8784852 14 128 3.5 5.5 4.5 2.5 165 chr2L 8784687 intergenic not near genes chr2L 8784770 intergenic not near genes chr2L 8784852 intergenic not near genes chr2L_14_8780001 chr2L_8780001 RAL-461 209 chr2L 8799788 8799803 chr2L 8799924 8799934 5 133 10.0 9.0 9.5 0.5 146 chr2L 8799788 intergenic not near genes chr2L 8799861 intergenic not near genes chr2L 8799934 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-461 210 chr2L 8799807 8799829 chr2L 8799921 8799923 5 116 7.0 8.0 7.5 0.6 116 chr2L 8799807 intergenic not near genes chr2L 8799865 intergenic not near genes chr2L 8799923 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-461 211 chr2L 9000262 9000305 chr2L 9007791 9007808 roo 13 7525 1.0 3.0 2.0 4.3 7546 chr2L 9000262 intergenic Try29F + chr2L 9004035 intergenic not near genes chr2L 9007808 intergenic not near genes chr2L_13_9000001 chr2L_9000001 RAL-461 212 chr2L 9025816 9025850 chr2L 9025906 9025953 10 97 5.5 3.0 4.2 1.9 137 chr2L 9025816 intron,3` UTR CG9582 -,CR44352 - chr2L 9025884 intron,3` UTR CG9582 -,CR44352 - chr2L 9025953 intron,3` UTR CG9582 -,CR44352 - chr2L_10_9025001 chr2L_9025001 RAL-461 213 chr2L 9070286 9070336 chr2L 9071944 9071991 26 1658 31.5 30.0 30.8 0.8 1705 chr2L 9070286 intron CG31708 - chr2L 9071138 5` UTR,5` UTR CG31708 -,CR44483 + chr2L 9071991 intergenic CR44483 + chr2L_26_9070001 chr2L_9070001 RAL-461 214 chr2L 9117250 9117291 chr2L 9117348 9117399 7 106 3.5 3.5 3.5 1.6 149 chr2L 9117250 intergenic not near genes chr2L 9117324 intergenic not near genes chr2L 9117399 intergenic not near genes chr2L_7_9115001 chr2L_9115001 RAL-461 215 chr2L 9160144 9160150 chr2L 9160203 9160214 4 76 0.5 1.0 0.8 2.2 70 chr2L 9160144 intron CG32982 + chr2L 9160179 intron CG32982 + chr2L 9160214 intron CG32982 + chr2L_4_9160001 chr2L_9160001 RAL-461 216 chr2L 9195851 9195882 chr2L 9195954 9195985 8 103 3.5 6.0 4.8 1.4 134 chr2L 9195851 intron tai + chr2L 9195918 intron tai + chr2L 9195985 intron tai + chr2L_8_9195001 chr2L_9195001 RAL-461 217 chr2L 9225844 9225881 chr2L 9225954 9225991 8 110 3.5 4.0 3.8 1.7 147 chr2L 9225844 intron tai + chr2L 9225918 intron tai + chr2L 9225991 intron tai + chr2L_8_9225001 chr2L_9225001 RAL-461 218 chr2L 9270729 9270747 chr2L 9270844 9270850 5 112 4.0 4.5 4.2 1.0 121 chr2L 9270729 intron Ggamma30A + chr2L 9270790 intron Ggamma30A + chr2L 9270850 intron Ggamma30A + chr2L_5_9270001 chr2L_9270001 RAL-461 219 chr2L 9279974 9280018 chr2L 9280088 9280123 5 107 0.5 5.5 3.0 1.2 149 chr2L 9279974 intron Ggamma30A + chr2L 9280048 intron Ggamma30A + chr2L 9280123 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-461 220 chr2L 9297358 9297401 chr2L 9297455 9297460 10 90 3.0 3.5 3.2 2.4 102 chr2L 9297358 3` UTR Ggamma30A + chr2L 9297409 3` UTR Ggamma30A + chr2L 9297460 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-461 221 chr2L 9358364 9358412 chr2L 9358712 9358743 16 344 3.5 3.5 3.5 3.6 379 chr2L 9358364 intergenic not near genes chr2L 9358554 intergenic not near genes chr2L 9358743 intergenic not near genes chr2L_16_9355001 chr2L_9355001 RAL-461 222 chr2L 9380226 9380254 chr2L 9380341 9380369 4 115 1.5 0.0 0.8 2.2 143 chr2L 9380226 exon Shawl - chr2L 9380298 intron Shawl - chr2L 9380369 intron Shawl - chr2L_4_9380001 chr2L_9380001 RAL-461 223 chr2L 9387230 9387254 chr2L 9387348 9387369 7 118 6.0 2.5 4.2 1.3 139 chr2L 9387230 intron Shawl - chr2L 9387300 intron Shawl - chr2L 9387369 intron Shawl - chr2L_7_9385001 chr2L_9385001 RAL-461 224 chr2L 9387264 9387277 chr2L 9387347 9387395 4 109 3.0 2.5 2.8 1.1 131 chr2L 9387264 intron Shawl - chr2L 9387330 intron Shawl - chr2L 9387395 intron,5` UTR Shawl -,Aldh + chr2L_4_9385001 chr2L_9385001 RAL-461 225 chr2L 9393481 9393515 chr2L 9396468 9396502 jockey 10 2984 2.5 5.0 3.8 2.1 3021 chr2L 9393481 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396502 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-461 226 chr2L 9407887 9407902 chr2L 9407989 9407990 4 98 0.5 4.5 2.5 1.1 103 chr2L 9407887 intron Shawl - chr2L 9407938 intron Shawl - chr2L 9407990 intron Shawl - chr2L_4_9405001 chr2L_9405001 RAL-461 227 chr2L 9439613 9439645 chr2L 9439711 9439743 12 95 4.5 0.5 2.5 3.4 130 chr2L 9439613 intron numb + chr2L 9439678 intron numb + chr2L 9439743 intron numb + chr2L_12_9435001 chr2L_9435001 RAL-461 228 chr2L 9439930 9439954 chr2L 9440039 9440063 10 108 6.5 7.0 6.8 1.3 133 chr2L 9439930 intron numb + chr2L 9439996 intron numb + chr2L 9440063 intron,exon numb +,CG33723 - chr2L_10_9435001 chr2L_9435001 RAL-461 229 chr2L 9454968 9454980 chr2L 9455090 9455102 5 120 5.0 1.0 3.0 1.2 134 chr2L 9454968 intron numb + chr2L 9455035 intron numb + chr2L 9455102 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-461 230 chr2L 9457051 9457087 chr2L 9457148 9457173 12 95 6.5 3.0 4.8 2.1 122 chr2L 9457051 intron numb + chr2L 9457112 intron numb + chr2L 9457173 intron numb + chr2L_12_9455001 chr2L_9455001 RAL-461 231 chr2L 9619479 9619522 chr2L 9619836 9619879 8 355 1.5 4.5 3.0 2.0 400 chr2L 9619479 intron GlcAT-S + chr2L 9619679 intron GlcAT-S + chr2L 9619879 intron GlcAT-S + chr2L_8_9615001 chr2L_9615001 RAL-461 232 chr2L 9665592 9665641 chr2L 9665740 9665792 11 143 0.5 3.5 2.0 3.7 200 chr2L 9665592 intergenic not near genes chr2L 9665692 intergenic not near genes chr2L 9665792 intergenic not near genes chr2L_11_9665001 chr2L_9665001 RAL-461 233 chr2L 9829571 9829612 chr2L 9829796 9829800 10 214 2.5 1.0 1.8 3.6 229 chr2L 9829571 intron nAChRalpha6 - chr2L 9829686 intron nAChRalpha6 - chr2L 9829800 intron nAChRalpha6 - chr2L_10_9825001 chr2L_9825001 RAL-461 234 chr2L 9843800 9843827 chr2L 9843897 9843926 7 95 2.0 4.5 3.2 1.7 126 chr2L 9843800 intron nAChRalpha6 - chr2L 9843863 intron nAChRalpha6 - chr2L 9843926 intron nAChRalpha6 - chr2L_7_9840001 chr2L_9840001 RAL-461 235 chr2L 9892488 9892530 chr2L 9892584 9892626 7 93 3.0 1.5 2.2 2.2 138 chr2L 9892488 intron mtDNA-helicase - chr2L 9892557 intron mtDNA-helicase - chr2L 9892626 intron mtDNA-helicase - chr2L_7_9890001 chr2L_9890001 RAL-461 236 chr2L 9973738 9973746 chr2L 9980851 9980856 HMS-Beagle 5 7121 5.5 2.0 3.8 1.0 7118 chr2L 9973738 intergenic not near genes chr2L 9977297 intergenic not near genes chr2L 9980856 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-461 237 chr2L 9986342 9986375 chr2L 9986447 9986468 6 109 1.5 3.5 2.5 1.7 126 chr2L 9986342 intron bib + chr2L 9986405 intron bib + chr2L 9986468 intron bib + chr2L_6_9985001 chr2L_9985001 RAL-461 238 chr2L 10039098 10039131 chr2L 10039339 10039362 8 238 2.5 0.5 1.5 3.2 264 chr2L 10039098 intergenic obst-B + chr2L 10039230 intergenic obst-B + chr2L 10039362 intergenic obst-B + chr2L_8_10035001 chr2L_10035001 RAL-461 239 chr2L 10058750 10058769 chr2L 10058845 10058865 5 96 2.0 0.5 1.2 2.3 115 chr2L 10058750 exon Pen + chr2L 10058808 intron Pen + chr2L 10058865 exon Pen + chr2L_5_10055001 chr2L_10055001 RAL-461 240 chr2L 10078123 10078149 chr2L 10078286 10078290 7 168 7.5 2.5 5.0 1.2 167 chr2L 10078123 intron CG44153 - chr2L 10078206 intron CG44153 - chr2L 10078290 intron CG44153 - chr2L_7_10075001 chr2L_10075001 RAL-461 241 chr2L 10095616 10095661 chr2L 10095716 10095761 15 96 2.5 6.0 4.2 2.9 145 chr2L 10095616 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095761 intron CG44153 - chr2L_15_10095001 chr2L_10095001 RAL-461 242 chr2L 10171156 10171182 chr2L 10171264 10171300 8 115 5.0 3.5 4.2 1.5 144 chr2L 10171156 intron CG44153 - chr2L 10171228 intron CG44153 - chr2L 10171300 intron CG44153 - chr2L_8_10170001 chr2L_10170001 RAL-461 243 chr2L 10176023 10176024 chr2L 16071771 16071771 5 5895747 18.0 14.5 16.2 0.3 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_13120001 chr2L_13120001 RAL-461 244 chr2L 10176531 10176567 chr2L 10176829 10176867 9 296 2.0 2.0 2.0 3.0 336 chr2L 10176531 intron CG44153 - chr2L 10176699 intron CG44153 - chr2L 10176867 intron CG44153 - chr2L_9_10175001 chr2L_10175001 RAL-461 245 chr2L 10180568 10180596 chr2L 10180675 10180702 7 106 2.5 0.0 1.2 3.2 134 chr2L 10180568 intergenic CG44153 - chr2L 10180635 intergenic CG44153 - chr2L 10180702 intergenic CG44153 - chr2L_7_10180001 chr2L_10180001 RAL-461 246 chr2L 10209828 10209854 chr2L 10209925 10209941 11 94 3.0 1.0 2.0 3.7 113 chr2L 10209828 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209884 3` UTR CG5727 - chr2L 10209941 3` UTR CG5727 - chr2L_11_10205001 chr2L_10205001 RAL-461 247 chr2L 10495292 10495303 chr2L 10495389 10495389 4 94 11.0 0.0 5.5 0.6 97 chr2L 10495292 intron Myo31DF - chr2L 10495340 intron Myo31DF - chr2L 10495389 intron Myo31DF - chr2L_4_10495001 chr2L_10495001 RAL-461 248 chr2L 10515340 10515382 chr2L 10515453 10515486 14 109 6.0 4.5 5.2 2.3 146 chr2L 10515340 intron,intron CG45083 -,Fatp - chr2L 10515413 intron,intron CG45083 -,Fatp - chr2L 10515486 intron,intron CG45083 -,Fatp - chr2L_14_10515001 chr2L_10515001 RAL-461 249 chr2L 10519494 10519504 chr2L 10519775 10519785 4 280 0.0 0.5 0.2 3.3 291 chr2L 10519494 intergenic Lrr47 + chr2L 10519640 intergenic Lrr47 + chr2L 10519785 intergenic not near genes chr2L_4_10515001 chr2L_10515001 RAL-461 250 chr2L 10531610 10531644 chr2L 10531707 10531756 8 109 0.0 3.5 1.8 2.9 146 chr2L 10531610 3` UTR Lip4 + chr2L 10531683 3` UTR Lip4 + chr2L 10531756 3` UTR Lip4 + chr2L_8_10530001 chr2L_10530001 RAL-461 251 chr2L 10563901 10563946 chr2L 10564008 10564059 4 104 1.5 2.0 1.8 1.4 158 chr2L 10563901 intron Trim9 + chr2L 10563980 intron Trim9 + chr2L 10564059 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-461 252 chr2L 10570623 10570633 chr2L 10572949 10572980 7 2324 20.0 22.5 21.2 0.3 2357 chr2L 10570623 intron Trim9 + chr2L 10571802 intron Trim9 + chr2L 10572980 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-461 253 chr2L 10592825 10592870 chr2L 10600507 10600552 opus 11 7680 1.0 5.0 3.0 2.8 7727 chr2L 10592825 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600552 intron Trim9 + chr2L_11_10595001 chr2L_10595001 RAL-461 254 chr2L 10604187 10604219 chr2L 10604279 10604321 7 97 7.0 0.0 3.5 1.6 134 chr2L 10604187 intron Trim9 + chr2L 10604254 intron Trim9 + chr2L 10604321 intron Trim9 + chr2L_7_10600001 chr2L_10600001 RAL-461 255 chr2L 10688549 10688574 chr2L 10688635 10688670 15 91 1.5 5.0 3.2 3.6 121 chr2L 10688549 intergenic CG7294 - chr2L 10688610 intergenic CG7294 - chr2L 10688670 intergenic CG7294 - chr2L_15_10685001 chr2L_10685001 RAL-461 256 chr2L 10698109 10698160 chr2L 10698212 10698237 14 91 1.5 3.5 2.5 4.0 128 chr2L 10698109 5` UTR CR44181 + chr2L 10698173 5` UTR CR44181 + chr2L 10698237 intergenic CR44181 +,CG7300 - chr2L_14_10695001 chr2L_10695001 RAL-461 257 chr2L 10705439 10705471 chr2L 10705542 10705566 4 100 2.0 3.5 2.8 1.1 127 chr2L 10705439 exon Lip2 - chr2L 10705502 intron Lip2 - chr2L 10705566 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-461 258 chr2L 10723525 10723546 chr2L 10723639 10723660 6 113 5.5 2.5 4.0 1.2 135 chr2L 10723525 intergenic not near genes chr2L 10723592 intergenic not near genes chr2L 10723660 intergenic not near genes chr2L_6_10720001 chr2L_10720001 RAL-461 259 chr2L 10803796 10803806 chr2L 10803858 10803901 7 96 1.5 1.5 1.5 2.8 105 chr2L 10803796 intergenic Nos - chr2L 10803848 intergenic Nos - chr2L 10803901 intergenic Nos - chr2L_7_10800001 chr2L_10800001 RAL-461 260 chr2L 10836757 10836775 chr2L 10836856 10836874 5 97 0.5 9.5 5.0 0.8 117 chr2L 10836757 intron Nos - chr2L 10836816 intron Nos - chr2L 10836874 intron Nos - chr2L_5_10835001 chr2L_10835001 RAL-461 261 chr2L 10847061 10847095 chr2L 10847147 10847194 10 95 1.0 5.0 3.0 2.5 133 chr2L 10847061 intergenic Porin2 -,porin - chr2L 10847128 intergenic Porin2 -,porin - chr2L 10847194 intergenic Porin2 -,porin - chr2L_10_10845001 chr2L_10845001 RAL-461 262 chr2L 10850976 10850991 chr2L 10851077 10851090 4 100 6.0 3.0 4.5 0.7 114 chr2L 10850976 intron CG43129 + chr2L 10851033 intron CG43129 + chr2L 10851090 intron CG43129 + chr2L_4_10850001 chr2L_10850001 RAL-461 263 chr2L 10912976 10912997 chr2L 10913069 10913096 4 98 4.5 3.0 3.8 0.8 120 chr2L 10912976 intergenic not near genes chr2L 10913036 intergenic not near genes chr2L 10913096 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-461 264 chr2L 10919782 10919830 chr2L 10919891 10919922 13 104 1.0 0.5 0.8 7.2 140 chr2L 10919782 intron dpr2 - chr2L 10919852 intron dpr2 - chr2L 10919922 intron dpr2 - chr2L_13_10915001 chr2L_10915001 RAL-461 265 chr2L 10946938 10946970 chr2L 10956163 10956176 roo 6 9226 1.5 4.5 3.0 1.5 9238 chr2L 10946938 intron dpr2 - chr2L 10951557 intron dpr2 - chr2L 10956176 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-461 266 chr2L 11055029 11055070 chr2L 11055134 11055175 7 104 7.5 2.0 4.8 1.2 146 chr2L 11055029 intron Samuel - chr2L 11055102 intron Samuel - chr2L 11055175 intron Samuel - chr2L_7_11055001 chr2L_11055001 RAL-461 267 chr2L 11074049 11074058 chr2L 11074165 11074168 5 114 2.0 0.0 1.0 2.5 119 chr2L 11074049 intergenic CR45725 - chr2L 11074108 intergenic CR45725 - chr2L 11074168 intergenic CR45725 - chr2L_5_11070001 chr2L_11070001 RAL-461 268 chr2L 11180066 11180105 chr2L 11180164 11180198 14 98 4.0 4.5 4.2 2.7 132 chr2L 11180066 intron,3` UTR Ca-beta -,CG4788 + chr2L 11180132 intron,3` UTR Ca-beta -,CG4788 + chr2L 11180198 intron,3` UTR Ca-beta -,CG4788 + chr2L_14_11180001 chr2L_11180001 RAL-461 269 chr2L 11292360 11292376 chr2L 11292461 11292477 8 101 7.5 4.5 6.0 1.1 117 chr2L 11292360 intergenic not near genes chr2L 11292418 intergenic not near genes chr2L 11292477 intergenic not near genes chr2L_8_11290001 chr2L_11290001 RAL-461 270 chr2L 11292394 11292407 chr2L 11292459 11292509 7 92 3.5 4.5 4.0 1.4 115 chr2L 11292394 intergenic not near genes chr2L 11292452 intergenic not near genes chr2L 11292509 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-461 271 chr2L 11380603 11380614 chr2L 11380700 11380711 4 97 0.0 3.0 1.5 1.6 108 chr2L 11380603 intergenic not near genes chr2L 11380657 intergenic not near genes chr2L 11380711 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-461 272 chr2L 11443183 11443198 chr2L 11443273 11443311 5 108 2.0 2.5 2.2 1.6 128 chr2L 11443183 intron salm - chr2L 11443247 intron salm - chr2L 11443311 intron salm - chr2L_5_11440001 chr2L_11440001 RAL-461 273 chr2L 11496614 11496654 chr2L 11496712 11496752 15 95 2.5 2.5 2.5 4.3 138 chr2L 11496614 intergenic CG6488 - chr2L 11496683 intergenic CG6488 - chr2L 11496752 intergenic CG6488 - chr2L_15_11495001 chr2L_11495001 RAL-461 274 chr2L 11540598 11540616 chr2L 11547985 11548038 Tabor 7 7412 7.0 5.5 6.2 1.0 7440 chr2L 11540598 intergenic not near genes chr2L 11544318 intergenic not near genes chr2L 11548038 intergenic not near genes chr2L_7_11540001 chr2L_11540001 RAL-461 275 chr2L 11563636 11563669 chr2L 11568841 11568893 copia 11 5209 2.5 2.0 2.2 3.4 5257 chr2L 11563636 intergenic not near genes chr2L 11566264 intergenic not near genes chr2L 11568893 intergenic not near genes chr2L_11_11565001 chr2L_11565001 RAL-461 276 chr2L 11665817 11665862 chr2L 11665915 11665960 5 98 0.0 1.0 0.5 3.3 143 chr2L 11665817 intergenic CR44481 + chr2L 11665888 intergenic CR44481 + chr2L 11665960 intergenic CR44481 + chr2L_5_11665001 chr2L_11665001 RAL-461 277 chr2L 11676317 11676323 chr2L 11676425 11676431 5 108 0.5 0.0 0.2 4.2 114 chr2L 11676317 intergenic not near genes chr2L 11676374 intergenic not near genes chr2L 11676431 intergenic not near genes chr2L_5_11675001 chr2L_11675001 RAL-461 278 chr2L 11688743 11688789 chr2L 11688840 11688886 16 93 3.0 3.0 3.0 4.0 143 chr2L 11688743 intergenic not near genes chr2L 11688814 intergenic not near genes chr2L 11688886 intergenic not near genes chr2L_16_11685001 chr2L_11685001 RAL-461 279 chr2L 11713497 11713534 chr2L 11720975 11721022 blood 7 7481 3.0 5.5 4.2 1.3 7525 chr2L 11713497 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721022 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-461 280 chr2L 11723083 11723125 chr2L 11723182 11723191 8 92 2.0 2.0 2.0 2.7 108 chr2L 11723083 intergenic not near genes chr2L 11723137 intergenic not near genes chr2L 11723191 intergenic not near genes chr2L_8_11720001 chr2L_11720001 RAL-461 281 chr2L 11856148 11856192 chr2L 11856359 11856403 7 210 1.0 0.5 0.8 3.9 255 chr2L 11856148 intron Pde1c - chr2L 11856276 intron Pde1c - chr2L 11856403 intron Pde1c - chr2L_7_11855001 chr2L_11855001 RAL-461 282 chr2L 11866985 11867010 chr2L 11867117 11867142 12 132 3.0 8.0 5.5 1.8 157 chr2L 11866985 intron Pde1c - chr2L 11867064 intron Pde1c - chr2L 11867142 intron Pde1c - chr2L_12_11865001 chr2L_11865001 RAL-461 283 chr2L 11955490 11955508 chr2L 11955628 11955646 4 138 2.0 5.5 3.8 0.8 156 chr2L 11955490 3` UTR CR43314 - chr2L 11955568 3` UTR CR43314 - chr2L 11955646 3` UTR CR43314 - chr2L_4_11955001 chr2L_11955001 RAL-461 284 chr2L 12031374 12031411 chr2L 12031467 12031512 13 95 3.0 4.0 3.5 2.9 138 chr2L 12031374 intron dmGlut + chr2L 12031443 intron dmGlut + chr2L 12031512 intron dmGlut + chr2L_13_12030001 chr2L_12030001 RAL-461 285 chr2L 12067315 12067354 chr2L 12074385 12074426 297 14 7069 3.5 4.5 4.0 2.8 7111 chr2L 12067315 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074426 intergenic not near genes chr2L_14_12070001 chr2L_12070001 RAL-461 286 chr2L 12153925 12153949 chr2L 12154022 12154046 6 96 2.5 6.0 4.2 1.2 121 chr2L 12153925 exon CG31760 + chr2L 12153986 intron CG31760 + chr2L 12154046 intron CG31760 + chr2L_6_12150001 chr2L_12150001 RAL-461 287 chr2L 12244882 12244896 chr2L 12244990 12244998 4 106 8.5 0.5 4.5 0.7 116 chr2L 12244882 intron aret + chr2L 12244940 intron aret + chr2L 12244998 intron aret + chr2L_4_12240001 chr2L_12240001 RAL-461 288 chr2L 12250687 12250720 chr2L 12250778 12250817 10 94 3.0 6.5 4.8 1.7 130 chr2L 12250687 intron aret + chr2L 12250752 intron aret + chr2L 12250817 intron aret + chr2L_10_12250001 chr2L_12250001 RAL-461 289 chr2L 12254006 12254030 chr2L 12254118 12254142 5 112 3.5 0.0 1.8 1.8 136 chr2L 12254006 intron aret + chr2L 12254074 intron aret + chr2L 12254142 intron aret + chr2L_5_12250001 chr2L_12250001 RAL-461 290 chr2L 12258317 12258353 chr2L 12258435 12258444 4 111 1.0 2.5 1.8 1.4 127 chr2L 12258317 intron aret + chr2L 12258380 intron aret + chr2L 12258444 intron aret + chr2L_4_12255001 chr2L_12255001 RAL-461 291 chr2L 12269822 12269873 chr2L 12270057 12270087 8 232 4.0 5.5 4.8 1.4 265 chr2L 12269822 intron aret + chr2L 12269954 intron aret + chr2L 12270087 intron aret + chr2L_8_12265001 chr2L_12265001 RAL-461 292 chr2L 12366843 12366891 chr2L 12366949 12366997 13 106 7.0 4.5 5.8 1.9 154 chr2L 12366843 intron bru-2 + chr2L 12366920 intron bru-2 + chr2L 12366997 intron bru-2 + chr2L_13_12365001 chr2L_12365001 RAL-461 293 chr2L 12426123 12426145 chr2L 12426221 12426248 4 99 2.0 4.5 3.2 1.0 125 chr2L 12426123 exon CG6405 + chr2L 12426186 exon CG6405 + chr2L 12426248 exon CG6405 + chr2L_4_12425001 chr2L_12425001 RAL-461 294 chr2L 12426149 12426155 chr2L 12426213 12426243 4 73 1.0 4.0 2.5 1.1 94 chr2L 12426149 exon CG6405 + chr2L 12426196 exon CG6405 + chr2L 12426243 exon CG6405 + chr2L_4_12425001 chr2L_12425001 RAL-461 295 chr2L 12466213 12466241 chr2L 12466319 12466347 5 106 0.0 1.5 0.8 2.8 134 chr2L 12466213 intron bun - chr2L 12466280 intron bun - chr2L 12466347 intron bun - chr2L_5_12465001 chr2L_12465001 RAL-461 296 chr2L 12481368 12481404 chr2L 12481470 12481506 8 96 2.5 6.0 4.2 1.5 138 chr2L 12481368 intron bun - chr2L 12481437 intron bun - chr2L 12481506 intron bun - chr2L_8_12480001 chr2L_12480001 RAL-461 297 chr2L 12487873 12487920 chr2L 12487969 12488009 18 94 4.0 7.5 5.8 2.6 136 chr2L 12487873 intron bun - chr2L 12487941 intron bun - chr2L 12488009 intron bun - chr2L_18_12485001 chr2L_12485001 RAL-461 298 chr2L 12502092 12502117 chr2L 12502354 12502370 7 259 3.0 6.0 4.5 1.3 278 chr2L 12502092 intron bun - chr2L 12502231 intron bun - chr2L 12502370 intron bun - chr2L_7_12500001 chr2L_12500001 RAL-461 299 chr2L 12529225 12529263 chr2L 12529382 12529405 8 166 2.5 3.5 3.0 2.0 180 chr2L 12529225 intron bun - chr2L 12529315 intron bun - chr2L 12529405 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-461 300 chr2L 12558299 12558346 chr2L 12565448 12565484 HMS-Beagle 8 7139 2.5 2.0 2.2 2.5 7185 chr2L 12558299 intergenic not near genes chr2L 12561892 intergenic not near genes chr2L 12565484 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-461 301 chr2L 12638758 12638808 chr2L 12638880 12638931 15 119 4.5 2.5 3.5 3.3 173 chr2L 12638758 intron Ref2 - chr2L 12638844 intron Ref2 - chr2L 12638931 intron Ref2 - chr2L_15_12635001 chr2L_12635001 RAL-461 302 chr2L 12647732 12647738 chr2L 12647794 12647800 4 73 1.0 6.0 3.5 0.9 68 chr2L 12647732 intergenic not near genes chr2L 12647766 intergenic not near genes chr2L 12647800 intergenic not near genes chr2L_4_12645001 chr2L_12645001 RAL-461 303 chr2L 12677700 12677729 chr2L 12677806 12677835 7 106 1.0 4.0 2.5 2.0 135 chr2L 12677700 intron pdm2 + chr2L 12677768 intron pdm2 + chr2L 12677835 intron pdm2 + chr2L_7_12675001 chr2L_12675001 RAL-461 304 chr2L 12682861 12682903 chr2L 12682960 12683002 9 92 7.0 6.0 6.5 1.2 141 chr2L 12682861 intron pdm2 + chr2L 12682932 intron pdm2 + chr2L 12683002 intron pdm2 + chr2L_9_12680001 chr2L_12680001 RAL-461 305 chr2L 12728901 12728943 chr2L 12729164 12729206 pogo 8 260 3.5 2.5 3.0 2.0 305 chr2L 12728901 intron MRP + chr2L 12729054 intron MRP + chr2L 12729206 exon MRP + chr2L_8_12725001 chr2L_12725001 RAL-461 306 chr2L 12731044 12731086 chr2L 12735825 12735866 F-element 8 4781 5.5 3.0 4.2 1.5 4822 chr2L 12731044 intron MRP + chr2L 12733455 intron MRP + chr2L 12735866 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-461 307 chr2L 12739156 12739203 chr2L 12743957 12743976 Doc 8 4796 1.0 4.0 2.5 2.3 4820 chr2L 12739156 exon MRP + chr2L 12741566 intron MRP + chr2L 12743976 intron MRP + chr2L_8_12740001 chr2L_12740001 RAL-461 308 chr2L 12759208 12759234 chr2L 12759306 12759309 6 98 0.5 2.5 1.5 2.4 101 chr2L 12759208 intergenic not near genes chr2L 12759258 intergenic not near genes chr2L 12759309 intergenic not near genes chr2L_6_12755001 chr2L_12755001 RAL-461 309 chr2L 12781780 12781810 chr2L 12789250 12789259 Quasimodo 8 7467 6.0 5.5 5.8 1.2 7479 chr2L 12781780 intergenic not near genes chr2L 12785520 intergenic not near genes chr2L 12789259 intergenic not near genes chr2L_8_12785001 chr2L_12785001 RAL-461 310 chr2L 12791592 12791630 chr2L 12795287 12795325 F-element 16 3690 5.0 7.5 6.2 2.2 3733 chr2L 12791592 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795325 intergenic not near genes chr2L_16_12790001 chr2L_12790001 RAL-461 311 chr2L 12807426 12807465 chr2L 12807522 12807556 7 90 3.5 1.0 2.2 2.2 130 chr2L 12807426 intergenic CR43818 - chr2L 12807491 intergenic CR43818 - chr2L 12807556 intergenic CR43818 - chr2L_7_12805001 chr2L_12805001 RAL-461 312 chr2L 12855291 12855328 chr2L 12855396 12855433 11 103 0.0 3.0 1.5 4.4 142 chr2L 12855291 intergenic not near genes chr2L 12855362 intergenic not near genes chr2L 12855433 intergenic not near genes chr2L_11_12855001 chr2L_12855001 RAL-461 313 chr2L 12861691 12861720 chr2L 12863168 12863182 hobo 5 1476 1.0 3.0 2.0 1.7 1491 chr2L 12861691 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-461 314 chr2L 12905469 12905496 chr2L 12905563 12905600 8 102 4.0 5.0 4.5 1.5 131 chr2L 12905469 intergenic not near genes chr2L 12905534 intergenic not near genes chr2L 12905600 intergenic not near genes chr2L_8_12905001 chr2L_12905001 RAL-461 315 chr2L 12933833 12933881 chr2L 12941320 12941368 blood 12 7484 4.0 3.5 3.8 2.5 7535 chr2L 12933833 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941368 intergenic not near genes chr2L_12_12935001 chr2L_12935001 RAL-461 316 chr2L 12944916 12944963 chr2L 12945086 12945130 7 168 3.0 0.0 1.5 2.8 214 chr2L 12944916 intergenic not near genes chr2L 12945023 intergenic not near genes chr2L 12945130 intergenic not near genes chr2L_7_12945001 chr2L_12945001 RAL-461 317 chr2L 13047943 13047980 chr2L 13048083 13048125 7 144 1.5 2.5 2.0 2.3 182 chr2L 13047943 intron CG9932 - chr2L 13048034 intron CG9932 - chr2L 13048125 intron CG9932 - chr2L_7_13045001 chr2L_13045001 RAL-461 318 chr2L 13076296 13076335 chr2L 13076414 13076448 11 114 18.5 14.0 16.2 0.6 152 chr2L 13076296 intergenic not near genes chr2L 13076372 intergenic not near genes chr2L 13076448 intergenic not near genes chr2L_11_13075001 chr2L_13075001 RAL-461 319 chr2L 13076153 13076208 chr2L 13076487 13076542 11 336 26.0 17.5 21.8 0.5 389 chr2L 13076153 intergenic not near genes chr2L 13076348 intergenic not near genes chr2L 13076542 intergenic not near genes chr2L_11_13075001 chr2L_13075001 RAL-461 320 chr2L 13147927 13147961 chr2L 13148028 13148062 12 99 3.5 4.0 3.8 2.5 135 chr2L 13147927 intergenic not near genes chr2L 13147994 intergenic not near genes chr2L 13148062 intergenic not near genes chr2L_12_13145001 chr2L_13145001 RAL-461 321 chr2L 13150368 13150420 chr2L 13150468 13150473 5 86 3.0 0.0 1.5 2.0 105 chr2L 13150368 intergenic not near genes chr2L 13150420 intergenic not near genes chr2L 13150473 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-461 322 chr2L 13154097 13154105 chr2L 13154194 13154202 5 97 8.5 0.5 4.5 0.9 105 chr2L 13154097 intergenic not near genes chr2L 13154150 intergenic not near genes chr2L 13154202 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-461 323 chr2L 13154106 13154122 chr2L 13154193 13154211 8 93 6.0 0.5 3.2 1.9 105 chr2L 13154106 intergenic not near genes chr2L 13154158 intergenic not near genes chr2L 13154211 intergenic not near genes chr2L_8_13150001 chr2L_13150001 RAL-461 324 chr2L 13405633 13405673 chr2L 13410450 13410490 Doc 14 4816 2.0 6.5 4.2 2.7 4857 chr2L 13405633 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410490 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-461 325 chr2L 13449442 13449496 chr2L 13456898 13456937 Quasimodo 12 7453 3.0 5.5 4.2 2.3 7495 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453190 intron CG42784 + chr2L 13456937 intron CG42784 + chr2L_12_13450001 chr2L_13450001 RAL-461 326 chr2L 13481454 13481469 chr2L 13482065 13482096 jockey 5 621 1.0 6.0 3.5 1.1 642 chr2L 13481454 intron CG42784 + chr2L 13481775 intron CG42784 + chr2L 13482096 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-461 327 chr2L 13522124 13522155 chr2L 13527652 13527693 Transpac 5 5536 8.5 4.0 6.2 0.7 5569 chr2L 13522124 intron B4 - chr2L 13524908 intron B4 - chr2L 13527693 intron B4 - chr2L_5_13520001 chr2L_13520001 RAL-461 328 chr2L 13594973 13595018 chr2L 13595072 13595116 10 94 1.5 4.0 2.8 2.6 143 chr2L 13594973 intron kuz + chr2L 13595044 intron kuz + chr2L 13595116 intron kuz + chr2L_10_13595001 chr2L_13595001 RAL-461 329 chr2L 13599105 13599111 chr2L 13599200 13599202 4 94 1.5 0.0 0.8 2.2 97 chr2L 13599105 intron kuz + chr2L 13599154 intron kuz + chr2L 13599202 intron kuz + chr2L_4_13595001 chr2L_13595001 RAL-461 330 chr2L 13605553 13605602 chr2L 13605655 13605687 11 94 5.5 4.5 5.0 1.8 134 chr2L 13605553 intron kuz + chr2L 13605620 intron kuz + chr2L 13605687 intron kuz + chr2L_11_13605001 chr2L_13605001 RAL-461 331 chr2L 13631741 13631788 chr2L 13631903 13631939 18 161 3.5 3.5 3.5 4.0 198 chr2L 13631741 intron kuz + chr2L 13631840 intron kuz + chr2L 13631939 intron kuz + chr2L_18_13630001 chr2L_13630001 RAL-461 332 chr2L 13643121 13643159 chr2L 13643393 13643431 10 269 6.5 2.5 4.5 1.8 310 chr2L 13643121 5` UTR CR44726 + chr2L 13643276 intergenic CR44726 + chr2L 13643431 intergenic CR44726 + chr2L_10_13640001 chr2L_13640001 RAL-461 333 chr2L 13673381 13673427 chr2L 13673688 13673733 9 304 0.0 1.0 0.5 6.0 352 chr2L 13673381 intergenic CG18507 + chr2L 13673557 intergenic not near genes chr2L 13673733 intergenic not near genes chr2L_9_13670001 chr2L_13670001 RAL-461 334 chr2L 13676359 13676399 chr2L 13676448 13676478 8 92 1.5 4.5 3.0 2.0 119 chr2L 13676359 intergenic CG31814 - chr2L 13676418 intergenic CG31814 - chr2L 13676478 intergenic CG31814 - chr2L_8_13675001 chr2L_13675001 RAL-461 335 chr2L 13677926 13677956 chr2L 13678026 13678056 7 99 2.5 4.0 3.2 1.7 130 chr2L 13677926 3` UTR CG31814 - chr2L 13677991 3` UTR CG31814 - chr2L 13678056 3` UTR CG31814 - chr2L_7_13675001 chr2L_13675001 RAL-461 336 chr2L 13684249 13684287 chr2L 13684345 13684383 10 95 3.0 3.0 3.0 2.5 134 chr2L 13684249 exon CG31814 - chr2L 13684316 intron CG31814 - chr2L 13684383 exon CG31814 - chr2L_10_13680001 chr2L_13680001 RAL-461 337 chr2L 13713545 13713571 chr2L 13713641 13713657 7 94 2.5 5.5 4.0 1.4 112 chr2L 13713545 intron CG31814 - chr2L 13713601 intron CG31814 - chr2L 13713657 intron CG31814 - chr2L_7_13710001 chr2L_13710001 RAL-461 338 chr2L 13749206 13749210 chr2L 13749309 13749313 5 103 0.0 1.0 0.5 3.3 107 chr2L 13749206 intron,intron CR44846 +,TM9SF4 + chr2L 13749260 intron,intron CR44846 +,TM9SF4 + chr2L 13749313 intron,intron CR44846 +,TM9SF4 + chr2L_5_13745001 chr2L_13745001 RAL-461 339 chr2L 13761790 13761830 chr2L 13762914 13762950 Doc 7 1124 7.5 3.5 5.5 1.1 1160 chr2L 13761790 intron TM9SF4 + chr2L 13762370 intron TM9SF4 + chr2L 13762950 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-461 340 chr2L 13853087 13853115 chr2L 13862235 13862258 roo 9 9163 4.5 0.0 2.2 2.8 9171 chr2L 13853087 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862258 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-461 341 chr2L 13918795 13918843 chr2L 13918902 13918933 8 104 2.0 4.5 3.2 1.9 138 chr2L 13918795 intron Ance-3 + chr2L 13918864 intron Ance-3 + chr2L 13918933 intron Ance-3 + chr2L_8_13915001 chr2L_13915001 RAL-461 342 chr2L 13966079 13966112 chr2L 13966241 13966281 13 168 4.0 3.0 3.5 2.9 202 chr2L 13966079 intron NimB2 - chr2L 13966180 intron NimB2 - chr2L 13966281 intron NimB2 - chr2L_13_13965001 chr2L_13965001 RAL-461 343 chr2L 13973265 13973293 chr2L 13973590 13973609 4 322 3.0 2.0 2.5 1.1 344 chr2L 13973265 3` UTR NimC1 - chr2L 13973437 3` UTR NimC1 - chr2L 13973609 3` UTR NimC1 - chr2L_4_13970001 chr2L_13970001 RAL-461 344 chr2L 14073159 14073211 chr2L 14073435 14073487 6 274 3.0 1.5 2.2 1.9 328 chr2L 14073159 intron nAChRalpha5 + chr2L 14073323 intron nAChRalpha5 + chr2L 14073487 intron nAChRalpha5 + chr2L_6_14070001 chr2L_14070001 RAL-461 345 chr2L 14182273 14182319 chr2L 14182385 14182419 8 108 3.5 4.0 3.8 1.7 146 chr2L 14182273 intergenic not near genes chr2L 14182346 intergenic not near genes chr2L 14182419 intergenic not near genes chr2L_8_14180001 chr2L_14180001 RAL-461 346 chr2L 14234461 14234478 chr2L 14234557 14234574 5 96 0.0 7.5 3.8 1.0 113 chr2L 14234461 intergenic CR44727 +,Dyrk2 - chr2L 14234518 intergenic CR44727 +,Dyrk2 - chr2L 14234574 intergenic CR44727 +,Dyrk2 - chr2L_5_14230001 chr2L_14230001 RAL-461 347 chr2L 14240824 14240877 chr2L 14240941 14240987 21 116 4.5 5.0 4.8 3.6 163 chr2L 14240824 intergenic CR44216 + chr2L 14240906 intergenic CR44216 + chr2L 14240987 intergenic CR44216 + chr2L_21_14240001 chr2L_14240001 RAL-461 348 chr2L 14313163 14313214 chr2L 14313327 14313338 15 160 1.0 2.5 1.8 5.4 175 chr2L 14313163 intron wb + chr2L 14313250 intron wb + chr2L 14313338 intron wb + chr2L_15_14310001 chr2L_14310001 RAL-461 349 chr2L 14369142 14369162 chr2L 14369253 14369285 6 127 2.5 5.5 4.0 1.2 143 chr2L 14369142 intergenic not near genes chr2L 14369214 intergenic not near genes chr2L 14369285 intergenic not near genes chr2L_6_14365001 chr2L_14365001 RAL-461 350 chr2L 14378023 14378065 chr2L 14378369 14378406 14 344 4.5 4.0 4.2 2.7 383 chr2L 14378023 intergenic ppk - chr2L 14378214 intergenic ppk - chr2L 14378406 3` UTR ppk - chr2L_14_14375001 chr2L_14375001 RAL-461 351 chr2L 14462710 14462823 chr2L 14462817 14462939 7 109 0.0 0.0 0.0 7.0 229 chr2L 14462710 intergenic not near genes chr2L 14462824 intergenic not near genes chr2L 14462939 intergenic not near genes chr2L_7_14460001 chr2L_14460001 RAL-461 352 chr2L 14547706 14547754 chr2L 14547808 14547851 5 101 4.5 8.5 6.5 0.7 145 chr2L 14547706 exon CG4218 - chr2L 14547778 exon CG4218 - chr2L 14547851 intron CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-461 353 chr2L 14588367 14588418 chr2L 14588541 14588568 16 166 5.0 2.5 3.8 3.3 201 chr2L 14588367 intergenic CG42680 - chr2L 14588468 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_16_14585001 chr2L_14585001 RAL-461 354 chr2L 14613255 14613292 chr2L 14613508 14613545 7 255 1.0 3.0 2.0 2.3 290 chr2L 14613255 intron osp - chr2L 14613400 intron,5` UTR osp -,CR43411 + chr2L 14613545 intron,5` UTR osp -,CR43411 + chr2L_7_14610001 chr2L_14610001 RAL-461 355 chr2L 14642553 14642601 chr2L 14651736 14651783 roo 7 9181 2.5 4.0 3.2 1.7 9230 chr2L 14642553 intron osp - chr2L 14647168 intron osp - chr2L 14651783 intron osp - chr2L_7_14645001 chr2L_14645001 RAL-461 356 chr2L 14694239 14694289 chr2L 14694383 14694426 14 142 2.0 2.5 2.2 4.4 187 chr2L 14694239 intergenic not near genes chr2L 14694332 intergenic not near genes chr2L 14694426 intergenic not near genes chr2L_14_14690001 chr2L_14690001 RAL-461 357 chr2L 14707208 14707236 chr2L 14707327 14707375 13 132 4.0 1.0 2.5 3.7 167 chr2L 14707208 intergenic not near genes chr2L 14707292 intergenic not near genes chr2L 14707375 intergenic not near genes chr2L_13_14705001 chr2L_14705001 RAL-461 358 chr2L 14768917 14768955 chr2L 14769008 14769043 13 90 0.5 3.5 2.0 4.3 126 chr2L 14768917 intergenic not near genes chr2L 14768980 intergenic not near genes chr2L 14769043 intergenic not near genes chr2L_13_14765001 chr2L_14765001 RAL-461 359 chr2L 14803859 14803912 chr2L 14809082 14809135 copia 11 5215 1.5 5.5 3.5 2.4 5276 chr2L 14803859 intergenic not near genes chr2L 14806497 intergenic not near genes chr2L 14809135 intergenic not near genes chr2L_11_14805001 chr2L_14805001 RAL-461 360 chr2L 14839730 14839779 chr2L 14839826 14839875 16 92 2.0 4.0 3.0 4.0 145 chr2L 14839730 intergenic not near genes chr2L 14839802 intergenic not near genes chr2L 14839875 intergenic not near genes chr2L_16_14835001 chr2L_14835001 RAL-461 361 chr2L 14840973 14841009 chr2L 14841080 14841111 10 105 0.5 5.5 3.0 2.5 138 chr2L 14840973 3` UTR CR43805 - chr2L 14841042 3` UTR CR43805 - chr2L 14841111 3` UTR CR43805 - chr2L_10_14840001 chr2L_14840001 RAL-461 362 chr2L 14889953 14889975 chr2L 14890386 14890415 jockey 5 438 4.5 2.5 3.5 1.1 462 chr2L 14889953 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890415 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-461 363 chr2L 14905718 14905764 chr2L 14905835 14905881 12 117 2.5 0.0 1.2 5.5 163 chr2L 14905718 intergenic not near genes chr2L 14905800 intergenic not near genes chr2L 14905881 intergenic not near genes chr2L_12_14905001 chr2L_14905001 RAL-461 364 chr2L 14941957 14941999 chr2L 14942080 14942124 5 122 3.0 1.5 2.2 1.6 167 chr2L 14941957 intron CG42313 - chr2L 14942040 intron CG42313 - chr2L 14942124 intron CG42313 - chr2L_5_14940001 chr2L_14940001 RAL-461 365 chr2L 14984368 14984405 chr2L 14991989 14992027 opus 5 7619 5.5 4.0 4.8 0.9 7659 chr2L 14984368 intron mol - chr2L 14988198 intron mol - chr2L 14992027 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-461 366 chr2L 15013133 15013181 chr2L 15013257 15013310 9 124 2.0 1.5 1.8 3.2 177 chr2L 15013133 intergenic CR43856 - chr2L 15013222 intergenic not near genes chr2L 15013310 intergenic not near genes chr2L_9_15010001 chr2L_15010001 RAL-461 367 chr2L 15021435 15021470 chr2L 15021516 15021566 20 94 3.0 4.5 3.8 4.2 131 chr2L 15021435 intron GABA-B-R1 + chr2L 15021500 intron GABA-B-R1 + chr2L 15021566 intron GABA-B-R1 + chr2L_20_15020001 chr2L_15020001 RAL-461 368 chr2L 15031549 15031569 chr2L 15031804 15031806 6 255 8.0 5.0 6.5 0.8 257 chr2L 15031549 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031678 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031806 intron GABA-B-R1 + chr2L_6_15030001 chr2L_15030001 RAL-461 369 chr2L 15044697 15044720 chr2L 15044793 15044809 10 94 5.5 0.0 2.8 2.6 112 chr2L 15044697 intergenic ck - chr2L 15044753 intergenic ck - chr2L 15044809 intergenic ck - chr2L_10_15040001 chr2L_15040001 RAL-461 370 chr2L 15068892 15068926 chr2L 15068991 15069020 6 98 3.5 3.0 3.2 1.4 128 chr2L 15068892 intron,intron vas +,vig - chr2L 15068956 intron,intron vas +,vig - chr2L 15069020 intron,intron vas +,vig - chr2L_6_15065001 chr2L_15065001 RAL-461 371 chr2L 15077874 15078096 chr2L 15077982 15078175 11 102 1.0 3.5 2.2 3.4 301 chr2L 15077874 intron CG15270 + chr2L 15078024 intron CG15270 + chr2L 15078175 intron CG15270 + chr2L_11_15075001 chr2L_15075001 RAL-461 372 chr2L 15122791 15122807 chr2L 15122886 15122897 7 97 0.0 5.5 2.8 1.8 106 chr2L 15122791 intergenic not near genes chr2L 15122844 intergenic not near genes chr2L 15122897 intergenic not near genes chr2L_7_15120001 chr2L_15120001 RAL-461 373 chr2L 15185942 15185977 chr2L 15186217 15186258 9 280 3.5 4.0 3.8 1.9 316 chr2L 15185942 intron CG4168 - chr2L 15186100 intron CG4168 - chr2L 15186258 intron CG4168 - chr2L_9_15185001 chr2L_15185001 RAL-461 374 chr2L 15309339 15309380 chr2L 15309455 15309503 7 122 2.0 2.5 2.2 2.2 164 chr2L 15309339 intergenic not near genes chr2L 15309421 intergenic not near genes chr2L 15309503 intergenic not near genes chr2L_7_15305001 chr2L_15305001 RAL-461 375 chr2L 15332220 15332251 chr2L 15332601 15332604 5 372 4.5 0.5 2.5 1.4 384 chr2L 15332220 intergenic not near genes chr2L 15332412 intergenic not near genes chr2L 15332604 intergenic not near genes chr2L_5_15330001 chr2L_15330001 RAL-461 376 chr2L 15354746 15354767 chr2L 15354852 15354862 4 104 2.0 2.0 2.0 1.3 116 chr2L 15354746 intergenic not near genes chr2L 15354804 intergenic not near genes chr2L 15354862 intergenic not near genes chr2L_4_15350001 chr2L_15350001 RAL-461 377 chr2L 15403224 15403267 chr2L 15403322 15403365 16 97 4.5 5.5 5.0 2.7 141 chr2L 15403224 intergenic not near genes chr2L 15403294 intergenic not near genes chr2L 15403365 intergenic not near genes chr2L_16_15400001 chr2L_15400001 RAL-461 378 chr2L 15446038 15446076 chr2L 15453519 15453565 blood 5 7483 2.5 2.5 2.5 1.4 7527 chr2L 15446038 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453565 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-461 379 chr2L 15482566 15482600 chr2L 15482722 15482756 12 154 2.0 6.5 4.2 2.3 190 chr2L 15482566 intergenic not near genes chr2L 15482661 intergenic not near genes chr2L 15482756 intergenic not near genes chr2L_12_15480001 chr2L_15480001 RAL-461 380 chr2L 15499892 15499945 chr2L 15500000 15500037 10 101 2.5 5.5 4.0 2.0 145 chr2L 15499892 intron lace + chr2L 15499964 intron lace + chr2L 15500037 intron lace + chr2L_10_15495001 chr2L_15495001 RAL-461 381 chr2L 15514307 15514329 chr2L 15514411 15514423 5 99 10.5 5.0 7.8 0.6 116 chr2L 15514307 intergenic not near genes chr2L 15514365 intergenic not near genes chr2L 15514423 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-461 382 chr2L 15586390 15586440 chr2L 15593462 15593510 297 9 7072 3.5 3.0 3.2 2.1 7120 chr2L 15586390 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593510 intergenic not near genes chr2L_9_15585001 chr2L_15585001 RAL-461 383 chr2L 15730872 15730892 chr2L 15730977 15730997 4 105 3.0 4.5 3.8 0.8 125 chr2L 15730872 intron CycE - chr2L 15730934 intron CycE - chr2L 15730997 intron CycE - chr2L_4_15730001 chr2L_15730001 RAL-461 384 chr2L 15736973 15736993 chr2L 15737059 15737098 4 94 1.5 2.5 2.0 1.3 125 chr2L 15736973 intron CycE - chr2L 15737036 intron CycE - chr2L 15737098 intron CycE - chr2L_4_15735001 chr2L_15735001 RAL-461 385 chr2L 15801148 15801163 chr2L 15801268 15801273 4 118 4.0 3.5 3.8 0.8 125 chr2L 15801148 intergenic not near genes chr2L 15801210 intergenic not near genes chr2L 15801273 intergenic not near genes chr2L_4_15800001 chr2L_15800001 RAL-461 386 chr2L 15820250 15820279 chr2L 15820365 15820404 7 131 3.0 3.5 3.2 1.7 154 chr2L 15820250 intergenic not near genes chr2L 15820327 intergenic not near genes chr2L 15820404 intergenic not near genes chr2L_7_15820001 chr2L_15820001 RAL-461 387 chr2L 15826874 15826891 chr2L 15829288 15829305 Tabor 6 2412 3.0 13.0 8.0 0.7 2431 chr2L 15826874 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829305 intergenic not near genes chr2L_6_15825001 chr2L_15825001 RAL-461 388 chr2L 15875225 15875265 chr2L 15875364 15875404 5 136 1.0 4.5 2.8 1.3 179 chr2L 15875225 intergenic not near genes chr2L 15875314 intergenic not near genes chr2L 15875404 intergenic not near genes chr2L_5_15875001 chr2L_15875001 RAL-461 389 chr2L 15954163 15954205 chr2L 15954262 15954296 11 95 24.0 22.0 23.0 0.5 133 chr2L 15954163 intron beat-Ib - chr2L 15954230 intron beat-Ib - chr2L 15954296 intron beat-Ib - chr2L_11_15950001 chr2L_15950001 RAL-461 390 chr2L 15956016 15956048 chr2L 15957491 15957535 hobo 14 1484 5.5 4.0 4.8 2.4 1519 chr2L 15956016 intron beat-Ib - chr2L 15956776 intron beat-Ib - chr2L 15957535 intron beat-Ib - chr2L_14_15955001 chr2L_15955001 RAL-461 391 chr2L 15967824 15967838 chr2L 15967920 15967927 4 103 2.5 1.5 2.0 1.3 103 chr2L 15967824 intergenic not near genes chr2L 15967876 intergenic not near genes chr2L 15967927 intergenic not near genes chr2L_4_15965001 chr2L_15965001 RAL-461 392 chr2L 16001447 16001483 chr2L 16001554 16001591 8 108 0.0 6.5 3.2 1.9 144 chr2L 16001447 intron beat-Ic + chr2L 16001519 intron beat-Ic + chr2L 16001591 intron beat-Ic + chr2L_8_16000001 chr2L_16000001 RAL-461 393 chr2L 16008674 16008699 chr2L 16008772 16008797 4 98 9.0 2.5 5.8 0.6 123 chr2L 16008674 intron beat-Ic + chr2L 16008736 intron beat-Ic + chr2L 16008797 intron beat-Ic + chr2L_4_16005001 chr2L_16005001 RAL-461 394 chr2L 16032161 16032182 chr2L 16032262 16032304 6 117 1.0 1.5 1.2 2.7 143 chr2L 16032161 intron beat-Ic + chr2L 16032232 intron beat-Ic + chr2L 16032304 intron beat-Ic + chr2L_6_16030001 chr2L_16030001 RAL-461 395 chr2L 16051592 16051623 chr2L 16051691 16051712 4 94 0.0 1.0 0.5 2.7 120 chr2L 16051592 intron beat-Ia + chr2L 16051652 intron beat-Ia + chr2L 16051712 intron beat-Ia + chr2L_4_16050001 chr2L_16050001 RAL-461 396 chr2L 16058118 16058146 chr2L 16058265 16058307 5 149 2.0 2.5 2.2 1.6 189 chr2L 16058118 intron beat-Ia + chr2L 16058212 intron beat-Ia + chr2L 16058307 intron beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-461 397 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 15.5 23.0 19.2 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-461 398 chr2L 16084573 16084611 chr2L 16084705 16084743 7 131 0.5 5.5 3.0 1.8 170 chr2L 16084573 intergenic not near genes chr2L 16084658 intergenic not near genes chr2L 16084743 intergenic not near genes chr2L_7_16080001 chr2L_16080001 RAL-461 399 chr2L 16141148 16141158 chr2L 16146375 16146385 copia 7 5227 4.5 3.0 3.8 1.5 5237 chr2L 16141148 intergenic not near genes chr2L 16143766 intergenic not near genes chr2L 16146385 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-461 400 chr2L 16141165 16141187 chr2L 16146371 16146414 copia 5 5223 1.0 3.0 2.0 1.7 5249 chr2L 16141165 intergenic not near genes chr2L 16143790 intergenic not near genes chr2L 16146414 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-461 401 chr2L 16153715 16153744 chr2L 16160789 16160818 297 6 7071 6.5 4.0 5.2 1.0 7103 chr2L 16153715 intergenic not near genes chr2L 16157266 intergenic not near genes chr2L 16160818 intergenic not near genes chr2L_6_16155001 chr2L_16155001 RAL-461 402 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133321 6.0 23.0 14.5 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-461 403 chr2L 16242429 16242442 chr2L 16242535 16242548 6 106 10.5 6.0 8.2 0.7 119 chr2L 16242429 exon CG42818 + chr2L 16242488 exon CG42818 + chr2L 16242548 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-461 404 chr2L 16242446 16242468 chr2L 16242532 16242574 5 94 5.0 4.5 4.8 0.9 128 chr2L 16242446 exon CG42818 + chr2L 16242510 exon CG42818 + chr2L 16242574 exon CG42818 + chr2L_5_16240001 chr2L_16240001 RAL-461 405 chr2L 16254414 16254450 chr2L 16254532 16254579 9 124 2.0 1.5 1.8 3.2 165 chr2L 16254414 intron PRL-1 - chr2L 16254496 intron PRL-1 - chr2L 16254579 intron PRL-1 - chr2L_9_16250001 chr2L_16250001 RAL-461 406 chr2L 16254884 16254908 chr2L 16255163 16255186 9 279 4.0 5.5 4.8 1.6 302 chr2L 16254884 intron PRL-1 - chr2L 16255035 intron PRL-1 - chr2L 16255186 intron PRL-1 - chr2L_9_16255001 chr2L_16255001 RAL-461 407 chr2L 16280253 16280280 chr2L 16281418 16281431 1360 5 1169 4.0 2.5 3.2 1.2 1178 chr2L 16280253 intron crp - chr2L 16280842 intron crp - chr2L 16281431 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-461 408 chr2L 16317147 16317196 chr2L 16317246 16317264 13 92 2.5 4.0 3.2 3.1 117 chr2L 16317147 intron cact - chr2L 16317206 intron cact - chr2L 16317264 intron cact - chr2L_13_16315001 chr2L_16315001 RAL-461 409 chr2L 16354758 16354786 chr2L 16354870 16354898 8 112 3.0 2.0 2.5 2.3 140 chr2L 16354758 intergenic CaBP1 -,CG4455 + chr2L 16354828 intergenic CaBP1 -,CG4455 + chr2L 16354898 3` UTR CaBP1 - chr2L_8_16350001 chr2L_16350001 RAL-461 410 chr2L 16363928 16363975 chr2L 16364188 16364231 11 263 2.5 1.0 1.8 3.9 303 chr2L 16363928 intergenic not near genes chr2L 16364080 intergenic not near genes chr2L 16364231 intergenic not near genes chr2L_11_16360001 chr2L_16360001 RAL-461 411 chr2L 16375350 16375379 chr2L 16375481 16375481 4 119 6.5 0.0 3.2 1.0 131 chr2L 16375350 intergenic not near genes chr2L 16375416 intergenic not near genes chr2L 16375481 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-461 412 chr2L 16377299 16377314 chr2L 16377432 16377447 4 131 5.5 2.5 4.0 0.8 148 chr2L 16377299 intergenic not near genes chr2L 16377373 intergenic not near genes chr2L 16377447 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-461 413 chr2L 16434096 16434129 chr2L 16434198 16434201 4 93 3.5 2.0 2.8 1.1 105 chr2L 16434096 intron CG5888 - chr2L 16434148 intron CG5888 - chr2L 16434201 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-461 414 chr2L 16504981 16505016 chr2L 16505100 16505146 15 126 0.5 5.5 3.0 3.8 165 chr2L 16504981 intron Tpr2 + chr2L 16505064 intron Tpr2 + chr2L 16505146 intron Tpr2 + chr2L_15_16505001 chr2L_16505001 RAL-461 415 chr2L 16511945 16511992 chr2L 16519077 16519126 HMS-Beagle 12 7131 2.5 4.5 3.5 2.7 7181 chr2L 16511945 intron CG5953 - chr2L 16515536 intron CG5953 - chr2L 16519126 intron CG5953 - chr2L_12_16515001 chr2L_16515001 RAL-461 416 chr2L 16550632 16550685 chr2L 16550728 16550773 15 92 4.0 2.5 3.2 3.6 141 chr2L 16550632 intron CG42389 + chr2L 16550702 intron CG42389 + chr2L 16550773 intron CG42389 + chr2L_15_16550001 chr2L_16550001 RAL-461 417 chr2L 16585764 16585809 chr2L 16585873 16585918 11 107 3.5 1.5 2.5 3.1 154 chr2L 16585764 intron CG42389 + chr2L 16585841 intron CG42389 + chr2L 16585918 intron CG42389 + chr2L_11_16585001 chr2L_16585001 RAL-461 418 chr2L 16590572 16590605 chr2L 16590680 16590708 9 105 4.5 9.0 6.8 1.2 136 chr2L 16590572 intron CG42389 + chr2L 16590640 intron CG42389 + chr2L 16590708 intron CG42389 + chr2L_9_16590001 chr2L_16590001 RAL-461 419 chr2L 16606367 16606373 chr2L 16606439 16606475 4 92 6.0 5.5 5.8 0.6 108 chr2L 16606367 intron,exon CG42389 +,CG31815 + chr2L 16606421 intron,exon CG42389 +,CG31815 + chr2L 16606475 intron,exon CG42389 +,CG31815 + chr2L_4_16605001 chr2L_16605001 RAL-461 420 chr2L 16681531 16681568 chr2L 16681627 16681644 4 87 3.5 5.5 4.5 0.7 113 chr2L 16681531 intron,3` UTR grp +,squ + chr2L 16681588 intron,3` UTR grp +,squ + chr2L 16681644 intron,3` UTR grp +,squ + chr2L_4_16680001 chr2L_16680001 RAL-461 421 chr2L 16709058 16709104 chr2L 16709161 16709193 14 97 4.0 5.0 4.5 2.5 135 chr2L 16709058 intron CG31808 - chr2L 16709126 intron CG31808 - chr2L 16709193 intron CG31808 - chr2L_14_16705001 chr2L_16705001 RAL-461 422 chr2L 16743292 16743336 chr2L 16743389 16743433 15 97 4.0 6.5 5.2 2.4 141 chr2L 16743292 intergenic CG17912 +,LSm7 - chr2L 16743362 intergenic CG17912 +,LSm7 - chr2L 16743433 5` UTR CG17912 + chr2L_15_16740001 chr2L_16740001 RAL-461 423 chr2L 16764950 16765001 chr2L 16765050 16765090 11 89 1.5 3.0 2.2 3.4 140 chr2L 16764950 intergenic not near genes chr2L 16765020 intergenic not near genes chr2L 16765090 intergenic not near genes chr2L_11_16765001 chr2L_16765001 RAL-461 424 chr2L 16796075 16796089 chr2L 16796194 16796210 5 121 0.0 7.0 3.5 1.1 135 chr2L 16796075 intergenic Ugt36Ba + chr2L 16796142 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796210 intergenic Ugt36Ba +,Ugt36Bb + chr2L_5_16795001 chr2L_16795001 RAL-461 425 chr2L 16796093 16796104 chr2L 16796185 16796225 9 112 0.0 5.5 2.8 2.4 132 chr2L 16796093 intergenic Ugt36Ba + chr2L 16796159 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796225 intergenic Ugt36Ba +,Ugt36Bb + chr2L_9_16795001 chr2L_16795001 RAL-461 426 chr2L 16799484 16799495 chr2L 16802074 16802085 7 2591 1.0 45.0 23.0 0.3 2601 chr2L 16799484 intron Ugt36Bc + chr2L 16800784 exon Ugt36Bc + chr2L 16802085 3` UTR CG13280 - chr2L_7_16800001 chr2L_16800001 RAL-461 427 chr2L 16809628 16809660 chr2L 16809776 16809808 9 148 0.5 0.0 0.2 7.5 180 chr2L 16809628 intron,intron CG13280 -,CG13272 + chr2L 16809718 intron,intron CG13280 -,CG13272 + chr2L 16809808 intron,intron CG13280 -,CG13272 + chr2L_9_16805001 chr2L_16805001 RAL-461 428 chr2L 16867021 16867036 chr2L 16867126 16867151 8 112 2.5 4.5 3.5 1.8 130 chr2L 16867021 intergenic not near genes chr2L 16867086 intergenic not near genes chr2L 16867151 intergenic not near genes chr2L_8_16865001 chr2L_16865001 RAL-461 429 chr2L 16952665 16952714 chr2L 16952794 16952797 7 120 2.0 3.5 2.8 1.8 132 chr2L 16952665 intergenic not near genes chr2L 16952731 intergenic not near genes chr2L 16952797 intergenic not near genes chr2L_7_16950001 chr2L_16950001 RAL-461 430 chr2L 16958090 16958126 chr2L 16962898 16962931 Doc 14 4806 8.0 8.0 8.0 1.6 4841 chr2L 16958090 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962931 intergenic not near genes chr2L_14_16960001 chr2L_16960001 RAL-461 431 chr2L 16973442 16973491 chr2L 16973553 16973602 11 105 3.5 2.5 3.0 2.8 160 chr2L 16973442 5` UTR beat-IIIb + chr2L 16973522 5` UTR beat-IIIb + chr2L 16973602 5` UTR beat-IIIb + chr2L_11_16970001 chr2L_16970001 RAL-461 432 chr2L 17032491 17032503 chr2L 17032596 17032608 4 104 6.0 1.5 3.8 0.8 117 chr2L 17032491 intergenic not near genes chr2L 17032550 intergenic not near genes chr2L 17032608 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-461 433 chr2L 17058424 17058469 chr2L 17058597 17058603 4 161 1.5 6.5 4.0 0.8 179 chr2L 17058424 intergenic not near genes chr2L 17058514 intergenic not near genes chr2L 17058603 intergenic not near genes chr2L_4_17055001 chr2L_17055001 RAL-461 434 chr2L 17062735 17062784 chr2L 17062837 17062876 8 99 2.0 1.0 1.5 3.2 141 chr2L 17062735 intergenic not near genes chr2L 17062806 intergenic not near genes chr2L 17062876 intergenic not near genes chr2L_8_17060001 chr2L_17060001 RAL-461 435 chr2L 17087367 17087398 chr2L 17087505 17087535 5 138 3.0 3.0 3.0 1.2 168 chr2L 17087367 intergenic CG12620 + chr2L 17087451 intergenic CG12620 + chr2L 17087535 intergenic CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-461 436 chr2L 17101020 17101051 chr2L 17101529 17101560 6 510 22.5 16.5 19.5 0.3 540 chr2L 17101020 intergenic not near genes chr2L 17101290 intergenic not near genes chr2L 17101560 intergenic not near genes chr2L_6_17100001 chr2L_17100001 RAL-461 437 chr2L 17121817 17121848 chr2L 17121915 17121947 6 94 2.5 1.5 2.0 2.0 130 chr2L 17121817 intergenic not near genes chr2L 17121882 intergenic not near genes chr2L 17121947 intergenic not near genes chr2L_6_17120001 chr2L_17120001 RAL-461 438 chr2L 17167577 17167588 chr2L 17167837 17167848 pogo 4 260 3.5 2.5 3.0 1.0 271 chr2L 17167577 intron,intron CG34106 +,beat-IIIa + chr2L 17167712 intron,intron CG34106 +,beat-IIIa + chr2L 17167848 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-461 439 chr2L 17168179 17168226 chr2L 17168971 17169011 14 794 3.0 4.0 3.5 3.1 832 chr2L 17168179 intron,intron CG34106 +,beat-IIIa + chr2L 17168595 intron,intron CG34106 +,beat-IIIa + chr2L 17169011 intron,intron CG34106 +,beat-IIIa + chr2L_14_17165001 chr2L_17165001 RAL-461 440 chr2L 17182215 17182243 chr2L 17182338 17182352 6 120 4.5 5.0 4.8 1.0 137 chr2L 17182215 exon CG31750 + chr2L 17182284 exon CG31750 + chr2L 17182352 exon CG31750 + chr2L_6_17180001 chr2L_17180001 RAL-461 441 chr2L 17182245 17182253 chr2L 17182337 17182376 5 117 3.0 5.0 4.0 1.0 131 chr2L 17182245 exon CG31750 + chr2L 17182310 exon CG31750 + chr2L 17182376 exon CG31750 + chr2L_5_17180001 chr2L_17180001 RAL-461 442 chr2L 17199142 17199189 chr2L 17200629 17200636 hobo 12 1482 1.5 2.5 2.0 4.0 1494 chr2L 17199142 intron beat-IIIc - chr2L 17199889 intron beat-IIIc - chr2L 17200636 intron beat-IIIc - chr2L_12_17195001 chr2L_17195001 RAL-461 443 chr2L 17208033 17208082 chr2L 17208149 17208198 7 107 2.5 3.5 3.0 1.8 165 chr2L 17208033 intron beat-IIIc - chr2L 17208116 intron beat-IIIc - chr2L 17208198 intron beat-IIIc - chr2L_7_17205001 chr2L_17205001 RAL-461 444 chr2L 17256516 17256569 chr2L 17257345 17257398 8 822 2.5 4.0 3.2 1.9 882 chr2L 17256516 intron beat-IIIc - chr2L 17256957 intron beat-IIIc - chr2L 17257398 intron beat-IIIc - chr2L_8_17255001 chr2L_17255001 RAL-461 445 chr2L 17273200 17273229 chr2L 17277981 17277991 F-element 5 4779 1.5 3.0 2.2 1.6 4791 chr2L 17273200 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17277991 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-461 446 chr2L 17292341 17292369 chr2L 17292441 17292469 6 98 3.5 1.5 2.5 1.7 128 chr2L 17292341 intergenic CG6380 - chr2L 17292405 intergenic CG6380 - chr2L 17292469 intergenic CG6380 - chr2L_6_17290001 chr2L_17290001 RAL-461 447 chr2L 17327913 17327929 chr2L 17328007 17328016 6 98 5.5 4.5 5.0 1.0 103 chr2L 17327913 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328016 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-461 448 chr2L 17378288 17378327 chr2L 17378857 17378889 9 561 8.0 18.5 13.2 0.6 601 chr2L 17378288 intron Lrch - chr2L 17378588 intron Lrch - chr2L 17378889 intron Lrch - chr2L_9_17375001 chr2L_17375001 RAL-461 449 chr2L 17378375 17378405 chr2L 17378861 17378892 11 487 13.5 19.0 16.2 0.6 517 chr2L 17378375 intron Lrch - chr2L 17378634 intron Lrch - chr2L 17378892 intron Lrch - chr2L_11_17375001 chr2L_17375001 RAL-461 450 chr2L 17379652 17379706 chr2L 17379766 17379809 4 107 2.5 0.0 1.2 1.8 157 chr2L 17379652 intron Lrch - chr2L 17379730 intron Lrch - chr2L 17379809 intron Lrch - chr2L_4_17375001 chr2L_17375001 RAL-461 451 chr2L 17432017 17432043 chr2L 17432135 17432170 1360 11 123 0.0 8.5 4.2 2.1 153 chr2L 17432017 intron Dif - chr2L 17432094 intron Dif - chr2L 17432170 intron Dif - chr2L_11_17430001 chr2L_17430001 RAL-461 452 chr2L 17511616 17511652 chr2L 17511778 17511814 4 160 4.5 1.0 2.8 1.1 198 chr2L 17511616 intron Dhc36C + chr2L 17511715 intron Dhc36C + chr2L 17511814 intron Dhc36C + chr2L_4_17510001 chr2L_17510001 RAL-461 453 chr2L 17554051 17554101 chr2L 17554147 17554197 13 94 2.5 4.5 3.5 2.9 146 chr2L 17554051 intergenic CG7094 - chr2L 17554124 intergenic CG7094 - chr2L 17554197 intergenic CG7094 - chr2L_13_17550001 chr2L_17550001 RAL-461 454 chr2L 17565122 17565153 chr2L 17565234 17565266 11 109 3.5 1.0 2.2 3.4 144 chr2L 17565122 intergenic not near genes chr2L 17565194 intergenic not near genes chr2L 17565266 intergenic not near genes chr2L_11_17565001 chr2L_17565001 RAL-461 455 chr2L 17629883 17629897 chr2L 17629976 17629995 6 96 6.0 6.5 6.2 0.8 112 chr2L 17629883 intergenic not near genes chr2L 17629939 intergenic not near genes chr2L 17629995 intergenic not near genes chr2L_6_17625001 chr2L_17625001 RAL-461 456 chr2L 17669104 17669124 chr2L 17669191 17669221 4 93 7.0 6.0 6.5 0.5 117 chr2L 17669104 intron CadN - chr2L 17669162 intron CadN - chr2L 17669221 intron CadN - chr2L_4_17665001 chr2L_17665001 RAL-461 457 chr2L 17755736 17755789 chr2L 17755843 17755896 4 107 3.0 0.5 1.8 1.4 160 chr2L 17755736 intron CadN - chr2L 17755816 intron CadN - chr2L 17755896 intron CadN - chr2L_4_17755001 chr2L_17755001 RAL-461 458 chr2L 17769412 17769462 chr2L 17769530 17769580 11 117 5.5 3.0 4.2 2.1 168 chr2L 17769412 intron CadN - chr2L 17769496 intron CadN - chr2L 17769580 intron CadN - chr2L_11_17765001 chr2L_17765001 RAL-461 459 chr2L 17819914 17819931 chr2L 17825128 17825155 copia 4 5218 5.0 1.5 3.2 1.0 5241 chr2L 17819914 intron CadN2 - chr2L 17822534 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-461 460 chr2L 17855496 17855508 chr2L 17855594 17855606 4 96 5.5 3.0 4.2 0.8 110 chr2L 17855496 intron CadN2 - chr2L 17855551 intron CadN2 - chr2L 17855606 intron CadN2 - chr2L_4_17855001 chr2L_17855001 RAL-461 461 chr2L 17855511 17855525 chr2L 17855582 17855622 4 79 3.0 2.5 2.8 1.1 111 chr2L 17855511 intron CadN2 - chr2L 17855566 intron CadN2 - chr2L 17855622 intron CadN2 - chr2L_4_17855001 chr2L_17855001 RAL-461 462 chr2L 17911958 17911990 chr2L 17914153 17914187 pogo 6 2193 2.0 5.0 3.5 1.3 2229 chr2L 17911958 intergenic not near genes chr2L 17913072 intergenic not near genes chr2L 17914187 intergenic CG43271 - chr2L_6_17910001 chr2L_17910001 RAL-461 463 chr2L 17951931 17951976 chr2L 17953418 17953463 hobo 20 1483 4.0 2.0 3.0 5.0 1532 chr2L 17951931 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953463 intergenic not near genes chr2L_20_17950001 chr2L_17950001 RAL-461 464 chr2L 17989974 17990000 chr2L 17990070 17990093 4 92 10.0 7.0 8.5 0.4 119 chr2L 17989974 intergenic Prosbeta5R2 + chr2L 17990034 intergenic Prosbeta5R2 + chr2L 17990093 intergenic Prosbeta5R2 + chr2L_4_17990001 chr2L_17990001 RAL-461 465 chr2L 17990003 17990026 chr2L 17990067 17990106 14 82 7.0 7.0 7.0 1.8 103 chr2L 17990003 intergenic Prosbeta5R2 + chr2L 17990054 intergenic Prosbeta5R2 + chr2L 17990106 intergenic Prosbeta5R2 + chr2L_14_17990001 chr2L_17990001 RAL-461 466 chr2L 17986757 17986798 chr2L 17991465 17991506 15 4713 13.5 34.5 24.0 0.6 4749 chr2L 17986757 exon CG5681 + chr2L 17989132 intergenic not near genes chr2L 17991506 3` UTR Prosbeta5R2 + chr2L_15_17985001 chr2L_17985001 RAL-461 467 chr2L 18032069 18032119 chr2L 18032170 18032219 10 101 0.5 3.5 2.0 3.3 150 chr2L 18032069 intron rdo + chr2L 18032144 intron rdo + chr2L 18032219 intron rdo + chr2L_10_18030001 chr2L_18030001 RAL-461 468 chr2L 18051865 18051903 chr2L 18061022 18061065 roo 9 9153 2.5 2.0 2.2 2.8 9200 chr2L 18051865 intron rdo + chr2L 18056465 intron rdo + chr2L 18061065 intron rdo + chr2L_9_18055001 chr2L_18055001 RAL-461 469 chr2L 18066344 18066388 chr2L 18066443 18066487 19 96 1.0 1.0 1.0 9.5 143 chr2L 18066344 intron rdo + chr2L 18066416 intron rdo + chr2L 18066487 intron rdo + chr2L_19_18065001 chr2L_18065001 RAL-461 470 chr2L 18111232 18111265 chr2L 18111343 18111348 5 105 4.0 9.0 6.5 0.7 116 chr2L 18111232 intergenic not near genes chr2L 18111290 intergenic not near genes chr2L 18111348 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-461 471 chr2L 18135000 18135048 chr2L 18135108 18135160 6 110 0.0 0.0 0.0 6.0 160 chr2L 18135000 intron kel - chr2L 18135080 intron kel - chr2L 18135160 intron kel - chr2L_6_18135001 chr2L_18135001 RAL-461 472 chr2L 18200508 18200544 chr2L 18200602 18200638 5 94 2.0 1.0 1.5 2.0 130 chr2L 18200508 intron,5` UTR CG42750 -,CR43413 + chr2L 18200573 intron,intron CG42750 -,CR43413 + chr2L 18200638 exon,intron CG42750 -,CR43413 + chr2L_5_18200001 chr2L_18200001 RAL-461 473 chr2L 18264048 18264084 chr2L 18264145 18264175 9 96 3.0 4.0 3.5 2.0 127 chr2L 18264048 intron CG42750 - chr2L 18264112 intron CG42750 - chr2L 18264175 intron CG42750 - chr2L_9_18260001 chr2L_18260001 RAL-461 474 chr2L 18401858 18401900 chr2L 18402171 18402210 11 316 1.5 2.0 1.8 3.9 352 chr2L 18401858 intergenic not near genes chr2L 18402034 intergenic not near genes chr2L 18402210 intergenic not near genes chr2L_11_18400001 chr2L_18400001 RAL-461 475 chr2L 18408024 18408048 chr2L 18412807 18412840 Doc 6 4793 7.5 0.0 3.8 1.2 4816 chr2L 18408024 intergenic not near genes chr2L 18410432 intergenic not near genes chr2L 18412840 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-461 476 chr2L 18443844 18443887 chr2L 18443944 18443987 7 100 2.0 4.0 3.0 1.8 143 chr2L 18443844 intergenic not near genes chr2L 18443916 intergenic not near genes chr2L 18443987 intergenic not near genes chr2L_7_18440001 chr2L_18440001 RAL-461 477 chr2L 18449477 18449521 chr2L 18449584 18449603 8 99 1.5 5.0 3.2 1.9 126 chr2L 18449477 intergenic bsf - chr2L 18449540 3` UTR bsf - chr2L 18449603 3` UTR bsf - chr2L_8_18445001 chr2L_18445001 RAL-461 478 chr2L 18576669 18576705 chr2L 18576798 18576823 9 126 6.0 3.5 4.8 1.6 154 chr2L 18576669 intron Pde11 - chr2L 18576746 intron Pde11 - chr2L 18576823 intron Pde11 - chr2L_9_18575001 chr2L_18575001 RAL-461 479 chr2L 18755899 18755943 chr2L 18756150 18756173 13 243 3.0 3.0 3.0 3.2 274 chr2L 18755899 intergenic not near genes chr2L 18756036 intergenic not near genes chr2L 18756173 intergenic not near genes chr2L_13_18755001 chr2L_18755001 RAL-461 480 chr2L 18811399 18811438 chr2L 18811501 18811540 7 102 4.0 0.5 2.2 2.2 141 chr2L 18811399 intergenic CG10570 -,CG42502 - chr2L 18811470 intergenic CG10570 -,CG42502 - chr2L 18811540 intergenic not near genes chr2L_7_18810001 chr2L_18810001 RAL-461 481 chr2L 18812543 18812590 chr2L 18812821 18812868 11 279 2.0 4.0 3.0 2.8 325 chr2L 18812543 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812868 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_11_18810001 chr2L_18810001 RAL-461 482 chr2L 18847912 18847930 chr2L 18848312 18848329 4 412 0.5 4.0 2.2 1.2 417 chr2L 18847912 intron CG17321 + chr2L 18848120 intron CG17321 + chr2L 18848329 intron CG17321 + chr2L_4_18845001 chr2L_18845001 RAL-461 483 chr2L 18883848 18883869 chr2L 18883950 18883961 4 99 7.0 6.0 6.5 0.5 113 chr2L 18883848 intergenic not near genes chr2L 18883904 intergenic not near genes chr2L 18883961 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-461 484 chr2L 18898382 18898411 chr2L 18898479 18898513 8 101 4.5 0.5 2.5 2.3 131 chr2L 18898382 intergenic not near genes chr2L 18898448 intergenic not near genes chr2L 18898513 intergenic not near genes chr2L_8_18895001 chr2L_18895001 RAL-461 485 chr2L 18898412 18898426 chr2L 18898477 18898481 7 87 2.5 0.5 1.5 2.8 69 chr2L 18898412 intergenic not near genes chr2L 18898446 intergenic not near genes chr2L 18898481 intergenic not near genes chr2L_7_18895001 chr2L_18895001 RAL-461 486 chr2L 18981718 18981728 chr2L 18981854 18981876 5 139 2.5 4.0 3.2 1.2 158 chr2L 18981718 intron Swip-1 - chr2L 18981797 intron Swip-1 - chr2L 18981876 intron Swip-1 - chr2L_5_18980001 chr2L_18980001 RAL-461 487 chr2L 19144908 19145191 chr2L 19145006 19145295 18 92 4.0 4.5 4.2 3.5 387 chr2L 19144908 intron brat + chr2L 19145102 intron brat + chr2L 19145295 intron brat + chr2L_18_19145001 chr2L_19145001 RAL-461 488 chr2L 19147358 19147399 chr2L 19154413 19154437 297 5 7046 2.0 3.5 2.8 1.3 7079 chr2L 19147358 intron brat + chr2L 19150898 intron brat + chr2L 19154437 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-461 489 chr2L 19159764 19159796 chr2L 19159899 19159905 5 128 4.5 2.5 3.5 1.1 141 chr2L 19159764 intron brat + chr2L 19159834 intron brat + chr2L 19159905 intron brat + chr2L_5_19155001 chr2L_19155001 RAL-461 490 chr2L 19199680 19199697 chr2L 19199754 19199769 5 75 2.5 2.0 2.2 1.6 89 chr2L 19199680 intron drl + chr2L 19199724 intron drl + chr2L 19199769 intron drl + chr2L_5_19195001 chr2L_19195001 RAL-461 491 chr2L 19246819 19246838 chr2L 19246917 19246936 9 98 5.5 2.0 3.8 1.9 117 chr2L 19246819 intergenic not near genes chr2L 19246878 intergenic not near genes chr2L 19246936 intergenic not near genes chr2L_9_19245001 chr2L_19245001 RAL-461 492 chr2L 19255950 19255975 chr2L 19256599 19256606 5 645 12.0 8.0 10.0 0.5 656 chr2L 19255950 intergenic not near genes chr2L 19256278 intergenic not near genes chr2L 19256606 intergenic not near genes chr2L_5_19255001 chr2L_19255001 RAL-461 493 chr2L 19311901 19311950 chr2L 19312007 19312057 8 107 1.0 2.0 1.5 3.2 156 chr2L 19311901 intergenic not near genes chr2L 19311979 intergenic not near genes chr2L 19312057 intergenic not near genes chr2L_8_19310001 chr2L_19310001 RAL-461 494 chr2L 19345014 19345041 chr2L 19357222 19357261 blood 6 12222 2.0 2.0 2.0 2.0 12247 chr2L 19345014 intron dnt - chr2L 19351138 intron dnt - chr2L 19357261 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-461 495 chr2L 19357525 19357568 chr2L 19357635 19357678 13 106 5.0 7.5 6.2 1.8 153 chr2L 19357525 intron dnt - chr2L 19357602 intron dnt - chr2L 19357678 intron dnt - chr2L_13_19355001 chr2L_19355001 RAL-461 496 chr2L 19380487 19380511 chr2L 19380587 19380611 9 96 3.0 4.5 3.8 1.9 124 chr2L 19380487 intergenic CG17350 + chr2L 19380549 intergenic CG17350 + chr2L 19380611 intergenic CG17350 + chr2L_9_19380001 chr2L_19380001 RAL-461 497 chr2L 19405605 19405636 chr2L 19405715 19405721 13 106 2.5 2.0 2.2 4.1 116 chr2L 19405605 intron Pax - chr2L 19405663 intron Pax - chr2L 19405721 intron Pax - chr2L_13_19405001 chr2L_19405001 RAL-461 498 chr2L 19441046 19441087 chr2L 19441143 19441183 11 96 4.0 4.0 4.0 2.2 137 chr2L 19441046 intron CG10237 - chr2L 19441114 intron CG10237 - chr2L 19441183 5` UTR CG10237 - chr2L_11_19440001 chr2L_19440001 RAL-461 499 chr2L 19558512 19558544 chr2L 19558626 19558663 8 122 2.0 5.0 3.5 1.8 151 chr2L 19558512 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558663 intron Tep5 + chr2L_8_19555001 chr2L_19555001 RAL-461 500 chr2L 19559995 19560033 chr2L 19560258 19560290 7 266 6.0 3.5 4.8 1.2 295 chr2L 19559995 exon Tep5 + chr2L 19560142 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-461 501 chr2L 19560820 19560856 chr2L 19560920 19560954 11 98 3.5 0.0 1.8 3.9 134 chr2L 19560820 exon Tep5 + chr2L 19560887 exon Tep5 + chr2L 19560954 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-461 502 chr2L 19561341 19561362 chr2L 19561502 19561518 11 159 1.5 3.5 2.5 3.1 177 chr2L 19561341 exon Tep5 + chr2L 19561430 exon Tep5 + chr2L 19561518 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-461 503 chr2L 19608587 19608610 chr2L 19608698 19608720 6 111 4.5 4.5 4.5 1.1 133 chr2L 19608587 intron Lar + chr2L 19608654 intron Lar + chr2L 19608720 intron Lar + chr2L_6_19605001 chr2L_19605001 RAL-461 504 chr2L 19620076 19620130 chr2L 19621083 19621086 jockey 6 995 5.0 1.0 3.0 1.5 1010 chr2L 19620076 intron Lar + chr2L 19620581 intron Lar + chr2L 19621086 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-461 505 chr2L 19638514 19638571 chr2L 19638622 19638679 12 107 5.0 2.5 3.8 2.5 165 chr2L 19638514 intron Lar + chr2L 19638596 intron Lar + chr2L 19638679 intron Lar + chr2L_12_19635001 chr2L_19635001 RAL-461 506 chr2L 19652548 19652587 chr2L 19674004 19674023 opus 13 21453 8.5 4.0 6.2 1.8 21475 chr2L 19652548 intron Lar + chr2L 19663286 intron Lar + chr2L 19674023 intron Lar + chr2L_13_19660001 chr2L_19660001 RAL-461 507 chr2L 19686999 19687037 chr2L 19687311 19687327 5 309 0.5 1.0 0.8 2.8 328 chr2L 19686999 intron Lar + chr2L 19687163 intron Lar + chr2L 19687327 intron Lar + chr2L_5_19685001 chr2L_19685001 RAL-461 508 chr2L 19703522 19703567 chr2L 19712674 19712723 roo 13 9152 4.5 6.0 5.2 2.1 9201 chr2L 19703522 intron Lar + chr2L 19708122 intron Lar + chr2L 19712723 intron Lar + chr2L_13_19705001 chr2L_19705001 RAL-461 509 chr2L 19720828 19720862 chr2L 19721347 19721401 8 531 12.0 10.5 11.2 0.7 573 chr2L 19720828 intron Lar + chr2L 19721114 intron Lar + chr2L 19721401 intron Lar + chr2L_8_19720001 chr2L_19720001 RAL-461 510 chr2L 19762790 19762831 chr2L 19763052 19763093 pogo 14 260 5.0 4.5 4.8 2.4 303 chr2L 19762790 5` UTR fbp - chr2L 19762942 intron fbp - chr2L 19763093 intron fbp - chr2L_14_19760001 chr2L_19760001 RAL-461 511 chr2L 19766166 19766207 chr2L 19766276 19766318 17 109 5.5 7.5 6.5 2.3 152 chr2L 19766166 3` UTR bsh - chr2L 19766242 3` UTR bsh - chr2L 19766318 3` UTR bsh - chr2L_17_19765001 chr2L_19765001 RAL-461 512 chr2L 19824393 19824426 chr2L 19824496 19824520 4 98 1.0 3.5 2.2 1.2 127 chr2L 19824393 intron sick + chr2L 19824456 intron sick + chr2L 19824520 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-461 513 chr2L 20005872 20005882 chr2L 20010968 20010978 flea 5 5096 8.0 8.0 8.0 0.6 5106 chr2L 20005872 intron CG43861 - chr2L 20008425 intron CG43861 - chr2L 20010978 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-461 514 chr2L 20005886 20005903 chr2L 20010962 20010999 flea 11 5087 5.0 8.0 6.5 1.5 5113 chr2L 20005886 intron CG43861 - chr2L 20008442 intron CG43861 - chr2L 20010999 intron CG43861 - chr2L_11_20005001 chr2L_20005001 RAL-461 515 chr2L 20022076 20022122 chr2L 20022209 20022254 8 132 2.0 3.5 2.8 2.1 178 chr2L 20022076 intergenic not near genes chr2L 20022165 intergenic not near genes chr2L 20022254 intergenic not near genes chr2L_8_20020001 chr2L_20020001 RAL-461 516 chr2L 20041417 20041460 chr2L 20041514 20041564 10 100 2.0 3.0 2.5 2.9 147 chr2L 20041417 intron sNPF + chr2L 20041490 intron sNPF + chr2L 20041564 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-461 517 chr2L 20079499 20079545 chr2L 20079640 20079686 17 139 2.5 0.0 1.2 7.7 187 chr2L 20079499 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079686 intron,intron neb +,fok - chr2L_17_20075001 chr2L_20075001 RAL-461 518 chr2L 20085459 20085499 chr2L 20085556 20085575 9 100 0.5 2.5 1.5 3.6 116 chr2L 20085459 intron neb + chr2L 20085517 intron neb + chr2L 20085575 intron neb + chr2L_9_20085001 chr2L_20085001 RAL-461 519 chr2L 20087249 20087276 chr2L 20087365 20087392 7 114 2.5 5.0 3.8 1.5 143 chr2L 20087249 intron neb + chr2L 20087320 intron neb + chr2L 20087392 intron neb + chr2L_7_20085001 chr2L_20085001 RAL-461 520 chr2L 20097251 20097278 chr2L 20097384 20097417 8 135 0.5 6.0 3.2 1.9 166 chr2L 20097251 5` UTR mRpS18B - chr2L 20097334 intergenic mRpS18B -,Kua + chr2L 20097417 intergenic Kua +,mRpS18B - chr2L_8_20095001 chr2L_20095001 RAL-461 521 chr2L 20124318 20124360 chr2L 20124414 20124451 9 96 4.0 7.0 5.5 1.4 133 chr2L 20124318 intergenic not near genes chr2L 20124384 intergenic not near genes chr2L 20124451 intergenic not near genes chr2L_9_20120001 chr2L_20120001 RAL-461 522 chr2L 20269592 20269604 chr2L 20269836 20269848 4 242 5.5 3.5 4.5 0.7 256 chr2L 20269592 intergenic not near genes chr2L 20269720 intergenic not near genes chr2L 20269848 intergenic not near genes chr2L_4_20265001 chr2L_20265001 RAL-461 523 chr2L 20271260 20271263 chr2L 20271346 20271366 4 91 6.5 3.0 4.8 0.7 106 chr2L 20271260 intergenic not near genes chr2L 20271313 intergenic not near genes chr2L 20271366 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-461 524 chr2L 20272099 20272138 chr2L 20282830 20282861 copia 13 10729 6.5 8.5 7.5 1.5 10762 chr2L 20272099 intergenic not near genes chr2L 20277480 intergenic not near genes chr2L 20282861 intergenic not near genes chr2L_13_20275001 chr2L_20275001 RAL-461 525 chr2L 20296504 20296539 chr2L 20296590 20296640 7 91 1.5 2.0 1.8 2.5 136 chr2L 20296504 intergenic CR43414 - chr2L 20296572 intergenic CR43414 - chr2L 20296640 intergenic CR43414 - chr2L_7_20295001 chr2L_20295001 RAL-461 526 chr2L 20298802 20298849 chr2L 20298905 20298952 8 101 5.0 7.0 6.0 1.1 150 chr2L 20298802 intergenic not near genes chr2L 20298877 intergenic not near genes chr2L 20298952 intergenic not near genes chr2L_8_20295001 chr2L_20295001 RAL-461 527 chr2L 20302977 20303012 chr2L 20303087 20303087 13 106 3.0 0.0 1.5 5.2 110 chr2L 20302977 intergenic not near genes chr2L 20303032 intergenic not near genes chr2L 20303087 intergenic not near genes chr2L_13_20300001 chr2L_20300001 RAL-461 528 chr2L 20303175 20303187 chr2L 20310648 20310675 blood 8 7483 1.5 4.5 3.0 2.0 7500 chr2L 20303175 intergenic not near genes chr2L 20306925 intergenic not near genes chr2L 20310675 intergenic not near genes chr2L_8_20305001 chr2L_20305001 RAL-461 529 chr2L 20310873 20310914 chr2L 20310961 20311005 9 91 1.5 6.0 3.8 1.9 132 chr2L 20310873 intergenic spir + chr2L 20310939 intergenic spir + chr2L 20311005 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-461 530 chr2L 20372209 20372246 chr2L 20372470 20372472 pogo 7 253 0.5 3.0 1.8 2.5 263 chr2L 20372209 intergenic Ugt37a1 - chr2L 20372340 intergenic Ugt37a1 - chr2L 20372472 3` UTR Ugt37a1 - chr2L_7_20370001 chr2L_20370001 RAL-461 531 chr2L 20383420 20383472 chr2L 20383532 20383584 5 106 3.0 0.5 1.8 1.8 164 chr2L 20383420 intergenic not near genes chr2L 20383502 intergenic not near genes chr2L 20383584 intergenic not near genes chr2L_5_20380001 chr2L_20380001 RAL-461 532 chr2L 20493743 20493789 chr2L 20493848 20493894 8 97 3.0 4.5 3.8 1.7 151 chr2L 20493743 intergenic not near genes chr2L 20493818 intergenic not near genes chr2L 20493894 intergenic not near genes chr2L_8_20490001 chr2L_20490001 RAL-461 533 chr2L 20498681 20498688 chr2L 20498789 20498802 4 112 5.0 4.5 4.8 0.7 121 chr2L 20498681 intergenic not near genes chr2L 20498742 intergenic not near genes chr2L 20498802 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-461 534 chr2L 20498692 20498705 chr2L 20498788 20498805 6 109 2.5 4.5 3.5 1.3 113 chr2L 20498692 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-461 535 chr2L 20568644 20568684 chr2L 20569054 20569094 X-element 13 408 4.0 3.5 3.8 2.7 450 chr2L 20568644 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569094 intron CR45347 + chr2L_13_20565001 chr2L_20565001 RAL-461 536 chr2L 20576199 20576247 chr2L 20583687 20583735 blood 11 7484 7.0 1.5 4.2 2.1 7536 chr2L 20576199 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583735 3` UTR CR44909 - chr2L_11_20575001 chr2L_20575001 RAL-461 537 chr2L 20623918 20623931 chr2L 20624000 20624030 4 95 7.5 2.5 5.0 0.7 112 chr2L 20623918 intron CR44909 - chr2L 20623974 intron CR44909 - chr2L 20624030 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-461 538 chr2L 20674815 20674857 chr2L 20674920 20674955 6 99 5.0 0.0 2.5 1.7 140 chr2L 20674815 intron CG31678 - chr2L 20674885 intron CG31678 - chr2L 20674955 intron CG31678 - chr2L_6_20670001 chr2L_20670001 RAL-461 539 chr2L 20719173 20719203 chr2L 20719566 20719586 11 391 5.5 5.5 5.5 1.7 413 chr2L 20719173 intergenic not near genes chr2L 20719380 intergenic not near genes chr2L 20719586 intergenic not near genes chr2L_11_20715001 chr2L_20715001 RAL-461 540 chr2L 20818494 20818523 chr2L 20818595 20818609 8 93 3.5 1.0 2.2 2.5 115 chr2L 20818494 exon CheB38a - chr2L 20818552 intergenic CheB38a - chr2L 20818609 intergenic CheB38a - chr2L_8_20815001 chr2L_20815001 RAL-461 541 chr2L 20835792 20835840 chr2L 20836529 20836577 Quasimodo 16 735 2.0 3.0 2.5 4.6 785 chr2L 20835792 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836577 intergenic Spn38F - chr2L_16_20835001 chr2L_20835001 RAL-461 542 chr2L 20901476 20901487 chr2L 20902622 20902651 1360 5 1157 0.5 0.5 0.5 3.3 1175 chr2L 20901476 intron,intron CG43739 -,sky - chr2L 20902064 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-461 543 chr2L 20911025 20911061 chr2L 20911105 20911157 18 91 4.5 4.0 4.2 3.5 132 chr2L 20911025 intron,intron CG43739 -,sky - chr2L 20911091 intron,intron CG43739 -,sky - chr2L 20911157 intron,intron CG43739 -,sky - chr2L_18_20910001 chr2L_20910001 RAL-461 544 chr2L 20928905 20928910 chr2L 20929460 20929470 4 558 3.0 7.5 5.2 0.6 565 chr2L 20928905 intergenic not near genes chr2L 20929188 intergenic CG9270 - chr2L 20929470 3` UTR CG9270 - chr2L_4_20925001 chr2L_20925001 RAL-461 545 chr2L 20939077 20939126 chr2L 20939175 20939201 6 88 1.5 3.5 2.5 1.7 124 chr2L 20939077 intergenic not near genes chr2L 20939139 intergenic not near genes chr2L 20939201 intergenic not near genes chr2L_6_20935001 chr2L_20935001 RAL-461 546 chr2L 20946924 20946958 chr2L 20947031 20947065 13 106 4.0 5.0 4.5 2.4 141 chr2L 20946924 intergenic CR44606 - chr2L 20946994 intergenic CR44606 - chr2L 20947065 intergenic CR44606 - chr2L_13_20945001 chr2L_20945001 RAL-461 547 chr2L 20976643 20976666 chr2L 20981478 20981501 X-element 5 4832 6.5 7.0 6.8 0.6 4858 chr2L 20976643 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981501 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-461 548 chr2L 20984719 20984765 chr2L 20984831 20984869 7 110 5.5 3.5 4.5 1.3 150 chr2L 20984719 intron CG42238 - chr2L 20984794 intron CG42238 - chr2L 20984869 intron CG42238 - chr2L_7_20980001 chr2L_20980001 RAL-461 549 chr2L 21020258 21020299 chr2L 21023955 21023990 NOF 6 3687 4.0 1.0 2.5 1.7 3732 chr2L 21020258 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023990 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-461 550 chr2L 21041151 21041165 chr2L 21049396 21049406 Tirant 5 8258 2.5 3.0 2.8 1.3 8255 chr2L 21041151 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049406 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-461 551 chr2L 21074901 21074951 chr2L 21075012 21075062 13 109 4.0 3.0 3.5 2.9 161 chr2L 21074901 intergenic not near genes chr2L 21074982 intergenic tadr + chr2L 21075062 intergenic tadr + chr2L_13_21070001 chr2L_21070001 RAL-461 552 chr2L 21110634 21110660 chr2L 21110739 21110765 6 105 6.5 4.5 5.5 0.9 131 chr2L 21110634 intron Nhe2 + chr2L 21110700 intron Nhe2 + chr2L 21110765 intron Nhe2 + chr2L_6_21110001 chr2L_21110001 RAL-461 553 chr2L 21110664 21110684 chr2L 21110734 21110789 9 97 3.5 3.0 3.2 2.1 125 chr2L 21110664 intron Nhe2 + chr2L 21110726 intron Nhe2 + chr2L 21110789 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-461 554 chr2L 21144207 21144212 chr2L 21145810 21145843 8 1597 15.0 26.0 20.5 0.4 1636 chr2L 21144207 exon CG9253 + chr2L 21145025 exon CG9253 + chr2L 21145843 exon del - chr2L_8_21145001 chr2L_21145001 RAL-461 555 chr2L 21286590 21286630 chr2L 21286688 21286697 8 94 4.5 4.5 4.5 1.5 107 chr2L 21286590 exon Mio - chr2L 21286644 intron Mio - chr2L 21286697 intron Mio - chr2L_8_21285001 chr2L_21285001 RAL-461 556 chr2L 21347556 21347563 chr2L 21355048 21355050 blood 4 7490 9.0 7.5 8.2 0.4 7494 chr2L 21347556 intron Tsp39D + chr2L 21351303 intron Tsp39D + chr2L 21355050 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-461 557 chr2L 21597024 21597060 chr2L 21604782 21604824 roo 8 7759 3.0 4.5 3.8 1.7 7800 chr2L 21597024 intergenic not near genes chr2L 21600924 intergenic not near genes chr2L 21604824 intergenic not near genes chr2L_8_21600001 chr2L_21600001 RAL-461 558 chr2L 21691807 21691841 chr2L 21698297 21698329 Burdock 10 6489 5.5 0.0 2.8 2.6 6522 chr2L 21691807 intron CG31619 + chr2L 21695068 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_10_21695001 chr2L_21695001 RAL-461 559 chr2L 21750084 21750130 chr2L 21750424 21750443 4 333 3.0 3.5 3.2 1.0 359 chr2L 21750084 intron step - chr2L 21750264 intron step - chr2L 21750443 intron step - chr2L_4_21750001 chr2L_21750001 RAL-461 560 chr2L 21754648 21754658 chr2L 21754747 21754749 5 99 8.5 9.0 8.8 0.5 101 chr2L 21754648 intron step - chr2L 21754698 intron step - chr2L 21754749 intron step - chr2L_5_21750001 chr2L_21750001 RAL-461 561 chr2L 21754659 21754690 chr2L 21754743 21754791 16 96 5.5 7.5 6.5 2.1 132 chr2L 21754659 intron step - chr2L 21754725 intron step - chr2L 21754791 intron step - chr2L_16_21750001 chr2L_21750001 RAL-461 562 chr2L 21771964 21772013 chr2L 21772063 21772105 13 95 2.5 5.5 4.0 2.6 141 chr2L 21771964 intron CG31612 - chr2L 21772034 intron CG31612 - chr2L 21772105 intron CG31612 - chr2L_13_21770001 chr2L_21770001 RAL-461 563 chr2L 21806233 21806260 chr2L 21806338 21806383 11 119 5.0 5.5 5.2 1.8 150 chr2L 21806233 intergenic not near genes chr2L 21806308 intergenic not near genes chr2L 21806383 intergenic not near genes chr2L_11_21805001 chr2L_21805001 RAL-461 564 chr2L 21808996 21809033 chr2L 21809222 21809228 5 216 3.5 6.5 5.0 0.8 232 chr2L 21808996 intergenic not near genes chr2L 21809112 intergenic not near genes chr2L 21809228 intergenic not near genes chr2L_5_21805001 chr2L_21805001 RAL-461 565 chr2L 21825130 21825162 chr2L 21825584 21825596 8 450 2.5 4.5 3.5 1.8 466 chr2L 21825130 intergenic not near genes chr2L 21825363 intergenic not near genes chr2L 21825596 intergenic not near genes chr2L_8_21825001 chr2L_21825001 RAL-461 566 chr2L 21855462 21855511 chr2L 21855568 21855611 11 100 3.5 2.0 2.8 2.9 149 chr2L 21855462 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855611 intron CR44917 + chr2L_11_21855001 chr2L_21855001 RAL-461 567 chr2L 21859302 21859347 chr2L 21859402 21859409 9 84 3.0 5.5 4.2 1.7 107 chr2L 21859302 intron CR44917 + chr2L 21859356 intron CR44917 + chr2L 21859409 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-461 568 chr2L 21953793 21953841 chr2L 21954674 21954725 28 889 54.5 55.0 54.8 0.5 932 chr2L 21953793 intergenic not near genes chr2L 21954259 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_28_21950001 chr2L_21950001 RAL-461 569 chr2L 21981667 21981712 chr2L 21990852 21990882 roo 11 9178 3.5 6.0 4.8 1.9 9215 chr2L 21981667 exon CG2528 - chr2L 21986274 intron CG2528 - chr2L 21990882 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-461 570 chr2L 22047243 22047257 chr2L 22047378 22047402 6 139 1.0 4.0 2.5 1.7 159 chr2L 22047243 intergenic not near genes chr2L 22047322 intergenic not near genes chr2L 22047402 intergenic not near genes chr2L_6_22045001 chr2L_22045001 RAL-461 571 chr2L 22058753 22058786 chr2L 22059582 22059601 8 827 4.0 7.0 5.5 1.2 848 chr2L 22058753 intergenic not near genes chr2L 22059177 intergenic not near genes chr2L 22059601 intergenic not near genes chr2L_8_22055001 chr2L_22055001 RAL-461 572 chr2L 22101468 22101505 chr2L 22101801 22101838 9 331 5.5 3.0 4.2 1.7 370 chr2L 22101468 intergenic not near genes chr2L 22101653 intergenic not near genes chr2L 22101838 intergenic not near genes chr2L_9_22100001 chr2L_22100001 RAL-461 573 chr2L 22165506 22165542 chr2L 22165601 22165642 12 100 4.5 5.5 5.0 2.0 136 chr2L 22165506 3` UTR CG42748 + chr2L 22165574 3` UTR CG42748 + chr2L 22165642 3` UTR CG42748 + chr2L_12_22165001 chr2L_22165001 RAL-461 574 chr2L 22548921 22548940 chr2L 22550166 22550185 1360 8 1244 0.0 14.0 7.0 1.0 1264 chr2L 22548921 intergenic CG17490 + chr2L 22549553 intergenic not near genes chr2L 22550185 intergenic CG17493 + chr2L_8_22545001 chr2L_22545001 RAL-461 575 chr2L 22558367 22558419 chr2L 22558698 22558750 13 324 3.5 5.0 4.2 2.5 383 chr2L 22558367 intergenic not near genes chr2L 22558558 intergenic not near genes chr2L 22558750 intergenic not near genes chr2L_13_22555001 chr2L_22555001 RAL-461 576 chr2L 22581950 22581991 chr2L 22583759 22583800 S-element 8 1809 7.0 5.5 6.2 1.1 1850 chr2L 22581950 intron CG17494 + chr2L 22582875 intron CG17494 + chr2L 22583800 intron CG17494 + chr2L_8_22580001 chr2L_22580001 RAL-461 577 chr2L 22719421 22719462 chr2L 22727564 22727596 gypsy2 11 8139 2.0 2.5 2.2 3.4 8175 chr2L 22719421 intron CG40006 - chr2L 22723508 intron CG40006 - chr2L 22727596 intron CG40006 - chr2L_11_22720001 chr2L_22720001 RAL-461 578 chr2L 22776401 22776452 chr2L 22778209 22778261 S-element 24 1807 6.5 6.5 6.5 3.2 1860 chr2L 22776401 intergenic not near genes chr2L 22777331 intergenic not near genes chr2L 22778261 intergenic not near genes chr2L_24_22775001 chr2L_22775001 RAL-461 579 chr2L 22941228 22941275 chr2L 22941330 22941377 7 102 3.0 3.5 3.2 1.7 149 chr2L 22941228 3` UTR lt + chr2L 22941302 3` UTR lt + chr2L 22941377 3` UTR lt + chr2L_7_22940001 chr2L_22940001 RAL-461 580 chr2L 23006483 23006530 chr2L 23007179 23007220 Osvaldo 9 691 4.0 5.0 4.5 1.6 737 chr2L 23006483 intron Cht3 - chr2L 23006852 intron Cht3 - chr2L 23007220 intron Cht3 - chr2L_9_23005001 chr2L_23005001 RAL-461 581 chr2R 529315 529354 chr2R 537960 537983 Max-element 10 8639 3.5 4.5 4.0 2.0 8668 chr2R 529315 intron CG40378 + chr2R 533649 intron CG40378 + chr2R 537983 intron CG40378 + chr2R_10_530001 chr2R_530001 RAL-461 582 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 4 10143355 9.0 16.5 12.8 0.3 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_4_6390001 chr2R_6390001 RAL-461 583 chr2R 1516587 1516603 chr2R 1521335 1521346 1731 14 4747 54.5 35.0 44.8 0.3 4759 chr2R 1516587 exon Maf1 - chr2R 1518966 intron Maf1 - chr2R 1521346 5` UTR Maf1 - chr2R_14_1515001 chr2R_1515001 RAL-461 584 chr2R 2498977 2499000 chr2R 2508129 2508166 roo 5 9163 3.5 4.5 4.0 1.0 9189 chr2R 2498977 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508166 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-461 585 chr2R 2591521 2591558 chr2R 2594212 2594218 roo 4 2679 26.0 11.5 18.8 0.2 2697 chr2R 2591521 intergenic not near genes chr2R 2592870 intergenic not near genes chr2R 2594218 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-461 586 chr2R 3532599 3532642 chr2R 3536062 3536095 Doc 12 3461 4.5 2.0 3.2 2.9 3496 chr2R 3532599 intergenic not near genes chr2R 3534347 intergenic not near genes chr2R 3536095 intergenic not near genes chr2R_12_3530001 chr2R_3530001 RAL-461 587 chr2R 4602835 4602874 chr2R 4603199 4603233 8 362 1.0 4.0 2.5 2.3 398 chr2R 4602835 intron p120ctn + chr2R 4603034 intron p120ctn + chr2R 4603233 intron p120ctn + chr2R_8_4600001 chr2R_4600001 RAL-461 588 chr2R 4622934 4622982 chr2R 4624112 4624161 1360 10 1174 3.5 4.5 4.0 2.0 1227 chr2R 4622934 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624161 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-461 589 chr2R 4688102 4688130 chr2R 4688202 4688243 14 106 3.0 5.0 4.0 2.8 141 chr2R 4688102 intergenic not near genes chr2R 4688172 intergenic not near genes chr2R 4688243 intergenic not near genes chr2R_14_4685001 chr2R_4685001 RAL-461 590 chr2R 4731936 4731981 chr2R 4732039 4732084 6 103 3.0 6.5 4.8 1.0 148 chr2R 4731936 intergenic not near genes chr2R 4732010 intergenic not near genes chr2R 4732084 intergenic not near genes chr2R_6_4730001 chr2R_4730001 RAL-461 591 chr2R 4783229 4783261 chr2R 4783383 4783415 5 153 1.5 5.0 3.2 1.2 186 chr2R 4783229 intergenic not near genes chr2R 4783322 intergenic not near genes chr2R 4783415 intergenic not near genes chr2R_5_4780001 chr2R_4780001 RAL-461 592 chr2R 4821203 4821246 chr2R 4821309 4821319 10 100 2.5 7.0 4.8 1.7 116 chr2R 4821203 intron CG17528 - chr2R 4821261 intron CG17528 - chr2R 4821319 intron CG17528 - chr2R_10_4820001 chr2R_4820001 RAL-461 593 chr2R 4838855 4838899 chr2R 4840398 4840442 transib2 8 1536 5.5 3.0 4.2 1.5 1587 chr2R 4838855 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840442 intergenic not near genes chr2R_8_4835001 chr2R_4835001 RAL-461 594 chr2R 4870725 4870743 chr2R 4871256 4871266 R1A1-element 8 530 5.5 5.5 5.5 1.2 541 chr2R 4870725 intergenic not near genes chr2R 4870996 intergenic not near genes chr2R 4871266 intergenic not near genes chr2R_8_4870001 chr2R_4870001 RAL-461 595 chr2R 4887626 4887641 chr2R 4887822 4887857 5 212 3.5 8.0 5.8 0.7 231 chr2R 4887626 intergenic not near genes chr2R 4887742 intergenic not near genes chr2R 4887857 intergenic not near genes chr2R_5_4885001 chr2R_4885001 RAL-461 596 chr2R 4908911 4908944 chr2R 4909001 4909042 10 89 2.5 5.5 4.0 2.0 131 chr2R 4908911 intergenic not near genes chr2R 4908976 intergenic not near genes chr2R 4909042 intergenic not near genes chr2R_10_4905001 chr2R_4905001 RAL-461 597 chr2R 4938487 4938515 chr2R 4938643 4938654 7 150 4.0 2.0 3.0 1.8 167 chr2R 4938487 intron Ir41a + chr2R 4938570 intron Ir41a + chr2R 4938654 intron Ir41a + chr2R_7_4935001 chr2R_4935001 RAL-461 598 chr2R 4940951 4940960 chr2R 4943421 4943430 4 2470 2.0 1.5 1.8 1.4 2479 chr2R 4940951 intron Ir41a + chr2R 4942190 intron Ir41a + chr2R 4943430 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-461 599 chr2R 4996340 4996344 chr2R 4996467 4996485 4 137 3.0 7.5 5.2 0.6 145 chr2R 4996340 intron Ir41a + chr2R 4996412 intron Ir41a + chr2R 4996485 intron Ir41a + chr2R_4_4995001 chr2R_4995001 RAL-461 600 chr2R 5075931 5075973 chr2R 5076073 5076115 9 143 27.0 30.5 28.8 0.3 184 chr2R 5075931 intergenic not near genes chr2R 5076023 intergenic not near genes chr2R 5076115 intergenic not near genes chr2R_9_5075001 chr2R_5075001 RAL-461 601 chr2R 5103032 5103076 chr2R 5103127 5103159 6 92 2.5 1.0 1.8 2.1 127 chr2R 5103032 intergenic not near genes chr2R 5103096 intergenic not near genes chr2R 5103159 intergenic not near genes chr2R_6_5100001 chr2R_5100001 RAL-461 602 chr2R 5125227 5125273 chr2R 5125565 5125611 11 333 2.0 3.0 2.5 3.1 384 chr2R 5125227 intron gus - chr2R 5125419 intron gus - chr2R 5125611 intron gus - chr2R_11_5125001 chr2R_5125001 RAL-461 603 chr2R 5192703 5192715 chr2R 5192800 5192802 6 94 8.5 8.0 8.2 0.7 99 chr2R 5192703 intron Nipped-A - chr2R 5192752 intron Nipped-A - chr2R 5192802 intron Nipped-A - chr2R_6_5190001 chr2R_5190001 RAL-461 604 chr2R 5363480 5363514 chr2R 5363569 5363612 10 93 5.0 7.0 6.0 1.4 132 chr2R 5363480 5` UTR CR42646 + chr2R 5363546 intron CR42646 + chr2R 5363612 intron CR42646 + chr2R_10_5360001 chr2R_5360001 RAL-461 605 chr2R 5417976 5418027 chr2R 5420628 5420677 Burdock 11 2648 6.5 7.0 6.8 1.4 2701 chr2R 5417976 intron laccase2 + chr2R 5419326 intron laccase2 + chr2R 5420677 intron laccase2 + chr2R_11_5415001 chr2R_5415001 RAL-461 606 chr2R 5455760 5455787 chr2R 5455858 5455885 7 98 8.5 2.5 5.5 1.1 125 chr2R 5455760 3` UTR laccase2 + chr2R 5455822 3` UTR laccase2 + chr2R 5455885 3` UTR laccase2 + chr2R_7_5455001 chr2R_5455001 RAL-461 607 chr2R 5455790 5455804 chr2R 5455855 5455886 6 79 3.5 2.0 2.8 1.6 96 chr2R 5455790 3` UTR laccase2 + chr2R 5455838 3` UTR laccase2 + chr2R 5455886 3` UTR laccase2 + chr2R_6_5455001 chr2R_5455001 RAL-461 608 chr2R 5473356 5473400 chr2R 5473465 5473515 13 130 1.0 2.0 1.5 5.2 159 chr2R 5473356 intron CG30440 - chr2R 5473436 intron CG30440 - chr2R 5473515 intron CG30440 - chr2R_13_5470001 chr2R_5470001 RAL-461 609 chr2R 5543209 5543221 chr2R 5547283 5547325 invader1 7 4098 0.0 5.5 2.8 1.8 4116 chr2R 5543209 intron CG30438 + chr2R 5545267 intron CG30438 + chr2R 5547325 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-461 610 chr2R 5731347 5731389 chr2R 5731447 5731457 10 91 6.0 1.0 3.5 2.2 110 chr2R 5731347 intergenic not near genes chr2R 5731402 intergenic not near genes chr2R 5731457 intergenic not near genes chr2R_10_5730001 chr2R_5730001 RAL-461 611 chr2R 5869267 5869280 chr2R 5874353 5874359 flea 6 5089 11.0 2.5 6.8 0.8 5092 chr2R 5869267 intergenic not near genes chr2R 5871813 intergenic not near genes chr2R 5874359 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-461 612 chr2R 5869281 5869308 chr2R 5874352 5874394 flea 8 5089 5.5 2.5 4.0 1.6 5113 chr2R 5869281 intergenic not near genes chr2R 5871838 intergenic not near genes chr2R 5874394 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-461 613 chr2R 5876855 5876904 chr2R 5876977 5877006 4 104 2.5 4.0 3.2 1.0 151 chr2R 5876855 intergenic not near genes chr2R 5876930 intergenic not near genes chr2R 5877006 intergenic not near genes chr2R_4_5875001 chr2R_5875001 RAL-461 614 chr2R 5878940 5878956 chr2R 5879005 5879055 6 94 4.0 9.0 6.5 0.8 115 chr2R 5878940 intergenic CG44438 - chr2R 5878998 intergenic CG44438 - chr2R 5879055 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-461 615 chr2R 5885346 5885373 chr2R 5885495 5885522 10 146 4.0 3.5 3.8 2.1 176 chr2R 5885346 5` UTR CR44125 + chr2R 5885434 5` UTR CR44125 + chr2R 5885522 5` UTR CR44125 + chr2R_10_5885001 chr2R_5885001 RAL-461 616 chr2R 5902155 5902194 chr2R 5909718 5909773 17.6 9 7576 5.5 3.5 4.5 1.6 7618 chr2R 5902155 intron CG43366 + chr2R 5905964 intron CG43366 + chr2R 5909773 intron CG43366 + chr2R_9_5905001 chr2R_5905001 RAL-461 617 chr2R 5991933 5991939 chr2R 5992041 5992047 4 108 8.5 7.5 8.0 0.4 114 chr2R 5991933 intron Src42A + chr2R 5991990 intron Src42A + chr2R 5992047 intron Src42A + chr2R_4_5990001 chr2R_5990001 RAL-461 618 chr2R 5991940 5991966 chr2R 5992035 5992053 8 100 3.5 6.5 5.0 1.3 113 chr2R 5991940 intron Src42A + chr2R 5991996 intron Src42A + chr2R 5992053 intron Src42A + chr2R_8_5990001 chr2R_5990001 RAL-461 619 chr2R 6025012 6025193 chr2R 6025130 6025421 11 200 1.5 3.5 2.5 3.1 409 chr2R 6025012 intergenic not near genes chr2R 6025216 intergenic not near genes chr2R 6025421 intergenic not near genes chr2R_11_6025001 chr2R_6025001 RAL-461 620 chr2R 6033433 6033466 chr2R 6033538 6033541 8 100 3.0 4.5 3.8 1.7 108 chr2R 6033433 intron SCAP - chr2R 6033487 intron SCAP - chr2R 6033541 intron SCAP - chr2R_8_6030001 chr2R_6030001 RAL-461 621 chr2R 6037436 6037444 chr2R 6037541 6037549 4 105 0.0 3.0 1.5 1.6 113 chr2R 6037436 intron CG14591 - chr2R 6037492 intron CG14591 - chr2R 6037549 intron CG14591 - chr2R_4_6035001 chr2R_6035001 RAL-461 622 chr2R 6037447 6037479 chr2R 6037540 6037584 14 103 0.0 3.0 1.5 5.6 137 chr2R 6037447 intron CG14591 - chr2R 6037516 intron CG14591 - chr2R 6037584 intron CG14591 - chr2R_14_6035001 chr2R_6035001 RAL-461 623 chr2R 6088351 6088388 chr2R 6088463 6088501 16 111 8.0 8.0 8.0 1.8 150 chr2R 6088351 intergenic not near genes chr2R 6088426 intergenic not near genes chr2R 6088501 intergenic not near genes chr2R_16_6085001 chr2R_6085001 RAL-461 624 chr2R 6129308 6129328 chr2R 6129406 6129426 9 97 8.0 2.5 5.2 1.5 118 chr2R 6129308 intron EcR - chr2R 6129367 intron EcR - chr2R 6129426 intron EcR - chr2R_9_6125001 chr2R_6125001 RAL-461 625 chr2R 6129331 6129348 chr2R 6129404 6129446 9 89 4.0 2.5 3.2 2.1 115 chr2R 6129331 intron EcR - chr2R 6129388 intron EcR - chr2R 6129446 intron EcR - chr2R_9_6125001 chr2R_6125001 RAL-461 626 chr2R 6168180 6168212 chr2R 6168281 6168314 10 100 7.5 3.5 5.5 1.5 134 chr2R 6168180 intron EcR - chr2R 6168247 intron EcR - chr2R 6168314 intron EcR - chr2R_10_6165001 chr2R_6165001 RAL-461 627 chr2R 6178100 6178128 chr2R 6178246 6178274 11 145 8.0 7.5 7.8 1.2 174 chr2R 6178100 intergenic not near genes chr2R 6178187 intergenic not near genes chr2R 6178274 intergenic not near genes chr2R_11_6175001 chr2R_6175001 RAL-461 628 chr2R 6236706 6236736 chr2R 6236833 6236839 5 122 1.5 2.5 2.0 1.7 133 chr2R 6236706 intron bin3 + chr2R 6236772 intron bin3 + chr2R 6236839 intron bin3 + chr2R_5_6235001 chr2R_6235001 RAL-461 629 chr2R 6530749 6530797 chr2R 6530849 6530897 11 99 5.0 0.0 2.5 3.1 148 chr2R 6530749 intron jing + chr2R 6530823 intron jing + chr2R 6530897 intron jing + chr2R_11_6530001 chr2R_6530001 RAL-461 630 chr2R 6546697 6546748 chr2R 6546818 6546869 20 117 6.0 6.0 6.0 2.9 172 chr2R 6546697 intron jing + chr2R 6546783 intron jing + chr2R 6546869 intron jing + chr2R_20_6545001 chr2R_6545001 RAL-461 631 chr2R 6579755 6579803 chr2R 6584860 6584909 flea 20 5105 5.0 4.5 4.8 3.4 5154 chr2R 6579755 intron jing + chr2R 6582332 intron jing + chr2R 6584909 intron jing + chr2R_20_6580001 chr2R_6580001 RAL-461 632 chr2R 6630275 6630305 chr2R 6630359 6630410 6 100 4.0 5.5 4.8 1.0 135 chr2R 6630275 intron Vha16-1 - chr2R 6630342 intron Vha16-1 - chr2R 6630410 intron Vha16-1 - chr2R_6_6630001 chr2R_6630001 RAL-461 633 chr2R 6633182 6633230 chr2R 6633274 6633326 11 94 2.5 4.0 3.2 2.6 144 chr2R 6633182 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633326 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-461 634 chr2R 6741502 6741525 chr2R 6741573 6741623 8 92 7.5 2.5 5.0 1.3 121 chr2R 6741502 intergenic phtf + chr2R 6741562 intergenic phtf + chr2R 6741623 intergenic phtf + chr2R_8_6740001 chr2R_6740001 RAL-461 635 chr2R 6861558 6861592 chr2R 6861656 6861690 10 96 5.5 2.5 4.0 2.0 132 chr2R 6861558 intergenic coro - chr2R 6861624 intergenic coro - chr2R 6861690 intergenic coro - chr2R_10_6860001 chr2R_6860001 RAL-461 636 chr2R 6870571 6870613 chr2R 6870694 6870716 8 120 2.5 3.5 3.0 2.0 145 chr2R 6870571 intron coro - chr2R 6870644 intron coro - chr2R 6870716 intron coro - chr2R_8_6870001 chr2R_6870001 RAL-461 637 chr2R 6876206 6876246 chr2R 6876308 6876338 12 96 4.5 3.5 4.0 2.4 132 chr2R 6876206 intron,intron CR44169 +,Spn42Da - chr2R 6876272 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876338 5` UTR,intron CR44169 +,Spn42Da - chr2R_12_6875001 chr2R_6875001 RAL-461 638 chr2R 6936214 6936268 chr2R 6936316 6936345 20 95 2.5 7.0 4.8 3.4 131 chr2R 6936214 intron mim - chr2R 6936280 intron mim - chr2R 6936345 intron mim - chr2R_20_6935001 chr2R_6935001 RAL-461 639 chr2R 6952155 6952182 chr2R 6959755 6959781 opus 9 7600 1.0 6.5 3.8 1.9 7626 chr2R 6952155 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959781 intron,intron mim -,CheB42c - chr2R_9_6955001 chr2R_6955001 RAL-461 640 chr2R 6964262 6964314 chr2R 6964359 6964395 12 93 4.0 5.5 4.8 2.1 133 chr2R 6964262 intron,intron mim -,CheB42c - chr2R 6964328 intron,intron mim -,CheB42c - chr2R 6964395 intron,intron mim -,CheB42c - chr2R_12_6960001 chr2R_6960001 RAL-461 641 chr2R 7009281 7009327 chr2R 7009629 7009645 19 350 5.5 3.5 4.5 3.5 364 chr2R 7009281 intergenic Tsp42Ed - chr2R 7009463 intergenic Tsp42Ed - chr2R 7009645 3` UTR Tsp42Ed - chr2R_19_7005001 chr2R_7005001 RAL-461 642 chr2R 7067575 7067623 chr2R 7067679 7067727 10 104 3.0 2.0 2.5 2.9 152 chr2R 7067575 intergenic not near genes chr2R 7067651 intergenic not near genes chr2R 7067727 intergenic not near genes chr2R_10_7065001 chr2R_7065001 RAL-461 643 chr2R 7076367 7076372 chr2R 7076472 7076477 5 105 9.5 5.0 7.2 0.6 110 chr2R 7076367 intergenic not near genes chr2R 7076422 intergenic not near genes chr2R 7076477 intergenic not near genes chr2R_5_7075001 chr2R_7075001 RAL-461 644 chr2R 7076380 7076416 chr2R 7076470 7076506 9 99 4.5 5.0 4.8 1.6 126 chr2R 7076380 intergenic not near genes chr2R 7076443 intergenic not near genes chr2R 7076506 intergenic not near genes chr2R_9_7075001 chr2R_7075001 RAL-461 645 chr2R 7091203 7091241 chr2R 7091293 7091336 12 99 4.0 6.0 5.0 2.0 133 chr2R 7091203 intron esn + chr2R 7091270 intron esn + chr2R 7091336 intron esn + chr2R_12_7090001 chr2R_7090001 RAL-461 646 chr2R 7160570 7160585 chr2R 7160632 7160683 8 90 2.0 2.5 2.2 2.5 113 chr2R 7160570 intron pk + chr2R 7160626 intron pk + chr2R 7160683 intron pk + chr2R_8_7160001 chr2R_7160001 RAL-461 647 chr2R 7164256 7164285 chr2R 7164464 7164496 5 206 3.0 2.5 2.8 1.3 240 chr2R 7164256 intron pk + chr2R 7164376 intron pk + chr2R 7164496 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-461 648 chr2R 7196557 7196589 chr2R 7201352 7201384 F-element 12 4794 5.5 0.0 2.8 3.2 4827 chr2R 7196557 intron pk + chr2R 7198970 intron pk + chr2R 7201384 intron pk + chr2R_12_7195001 chr2R_7195001 RAL-461 649 chr2R 7209846 7209870 chr2R 7217602 7217638 roo 8 7765 6.0 8.5 7.2 1.0 7792 chr2R 7209846 intron pk + chr2R 7213742 intron pk + chr2R 7217638 intron pk + chr2R_8_7210001 chr2R_7210001 RAL-461 650 chr2R 7290179 7290204 chr2R 7290301 7290326 5 122 9.0 5.0 7.0 0.6 147 chr2R 7290179 intron pwn + chr2R 7290252 intron pwn + chr2R 7290326 intron pwn + chr2R_5_7290001 chr2R_7290001 RAL-461 651 chr2R 7290207 7290224 chr2R 7290299 7290346 6 111 2.5 4.5 3.5 1.3 139 chr2R 7290207 intron pwn + chr2R 7290276 intron pwn + chr2R 7290346 intron pwn + chr2R_6_7290001 chr2R_7290001 RAL-461 652 chr2R 7417889 7418166 chr2R 7417994 7418225 13 97 4.5 8.0 6.2 1.8 336 chr2R 7417889 intergenic not near genes chr2R 7418057 intergenic not near genes chr2R 7418225 intergenic not near genes chr2R_13_7415001 chr2R_7415001 RAL-461 653 chr2R 7434879 7434911 chr2R 7439198 7439227 Juan 9 4319 6.5 8.5 7.5 1.1 4348 chr2R 7434879 intergenic so + chr2R 7437053 intergenic not near genes chr2R 7439227 intergenic not near genes chr2R_9_7435001 chr2R_7435001 RAL-461 654 chr2R 7450187 7450227 chr2R 7450287 7450337 11 106 3.0 6.0 4.5 2.0 150 chr2R 7450187 intron fa2h - chr2R 7450262 intron fa2h - chr2R 7450337 intron fa2h - chr2R_11_7450001 chr2R_7450001 RAL-461 655 chr2R 7563076 7563119 chr2R 7563175 7563213 10 95 5.5 5.0 5.2 1.6 137 chr2R 7563076 3` UTR Corin + chr2R 7563144 3` UTR Corin + chr2R 7563213 3` UTR Corin + chr2R_10_7560001 chr2R_7560001 RAL-461 656 chr2R 7776115 7776130 chr2R 7776256 7776267 4 139 2.0 4.0 3.0 1.0 152 chr2R 7776115 intron,intron CG30497 -,CG45093 - chr2R 7776191 intron,intron CG30497 -,CG45093 - chr2R 7776267 intron,intron CG30497 -,CG45093 - chr2R_4_7775001 chr2R_7775001 RAL-461 657 chr2R 7815653 7815703 chr2R 7822141 7822142 Burdock 11 6481 3.5 6.0 4.8 1.9 6489 chr2R 7815653 intergenic CG1882 + chr2R 7818898 intergenic not near genes chr2R 7822142 3` UTR cathD - chr2R_11_7815001 chr2R_7815001 RAL-461 658 chr2R 7869196 7869211 chr2R 7873980 7873999 Doc 5 4798 5.0 3.5 4.2 1.0 4803 chr2R 7869196 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7873999 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-461 659 chr2R 7885953 7885965 chr2R 7886303 7886305 4 356 1.5 2.0 1.8 1.4 352 chr2R 7885953 5` UTR Dgk - chr2R 7886129 intergenic Dgk - chr2R 7886305 intergenic Dgk - chr2R_4_7885001 chr2R_7885001 RAL-461 660 chr2R 8014416 8014450 chr2R 8014509 8014555 10 100 2.0 3.5 2.8 2.6 139 chr2R 8014416 intergenic not near genes chr2R 8014486 intergenic not near genes chr2R 8014555 intergenic not near genes chr2R_10_8010001 chr2R_8010001 RAL-461 661 chr2R 8176881 8176903 chr2R 8182502 8182534 6 5622 13.0 13.0 13.0 0.4 5653 chr2R 8176881 intron LRP1 + chr2R 8179708 intron LRP1 + chr2R 8182534 intron LRP1 + chr2R_6_8175001 chr2R_8175001 RAL-461 662 chr2R 8189772 8189808 chr2R 8189864 8189910 6 92 3.5 4.0 3.8 1.2 138 chr2R 8189772 intron LRP1 + chr2R 8189841 intron LRP1 + chr2R 8189910 intron LRP1 + chr2R_6_8185001 chr2R_8185001 RAL-461 663 chr2R 8203745 8203776 chr2R 8203836 8203867 11 105 2.5 1.0 1.8 3.9 122 chr2R 8203745 intron LRP1 + chr2R 8203806 intron LRP1 + chr2R 8203867 intron LRP1 + chr2R_11_8200001 chr2R_8200001 RAL-461 664 chr2R 8236017 8236050 chr2R 8236118 8236150 11 100 5.5 1.5 3.5 2.4 133 chr2R 8236017 intergenic not near genes chr2R 8236084 intergenic not near genes chr2R 8236150 intergenic not near genes chr2R_11_8235001 chr2R_8235001 RAL-461 665 chr2R 8330851 8330890 chr2R 8331357 8331396 roo 11 506 2.5 4.0 3.2 2.6 545 chr2R 8330851 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331396 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-461 666 chr2R 8338626 8338666 chr2R 8338728 8338768 9 99 0.0 1.0 0.5 6.0 142 chr2R 8338626 intron pdm3 + chr2R 8338697 intron pdm3 + chr2R 8338768 intron pdm3 + chr2R_9_8335001 chr2R_8335001 RAL-461 667 chr2R 8398192 8398233 chr2R 8402993 8403034 Doc 4 4794 2.0 1.0 1.5 1.6 4842 chr2R 8398192 intron CG2121 - chr2R 8400613 intron CG2121 - chr2R 8403034 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-461 668 chr2R 8441931 8441946 chr2R 8442088 8442092 6 155 5.5 6.0 5.8 0.9 161 chr2R 8441931 intron Cyp4ad1 - chr2R 8442012 intron Cyp4ad1 - chr2R 8442092 intron Cyp4ad1 - chr2R_6_8440001 chr2R_8440001 RAL-461 669 chr2R 8520477 8520505 chr2R 8520863 8520879 5 379 9.5 14.5 12.0 0.4 402 chr2R 8520477 intron mtt - chr2R 8520678 intron mtt - chr2R 8520879 intron mtt - chr2R_5_8520001 chr2R_8520001 RAL-461 670 chr2R 8615773 8615803 chr2R 8615885 8615936 10 123 5.0 2.5 3.8 2.1 163 chr2R 8615773 intron Cirl + chr2R 8615854 intron Cirl + chr2R 8615936 5` UTR Cirl + chr2R_10_8615001 chr2R_8615001 RAL-461 671 chr2R 8714714 8714723 chr2R 8714810 8714829 5 101 0.0 11.5 5.8 0.7 115 chr2R 8714714 3` UTR PGRP-SC1b + chr2R 8714772 3` UTR PGRP-SC1b + chr2R 8714829 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-461 672 chr2R 8722743 8722789 chr2R 8723004 8723031 pogo 11 253 3.5 2.0 2.8 2.9 288 chr2R 8722743 intron CG14767 - chr2R 8722887 intron CG14767 - chr2R 8723031 intron CG14767 - chr2R_11_8720001 chr2R_8720001 RAL-461 673 chr2R 8922123 8922128 chr2R 8922290 8922298 4 170 6.5 0.0 3.2 1.0 175 chr2R 8922123 exon Spt - chr2R 8922210 exon Spt - chr2R 8922298 intron Spt - chr2R_4_8920001 chr2R_8920001 RAL-461 674 chr2R 8922133 8922148 chr2R 8922284 8922291 5 162 5.5 0.0 2.8 1.3 158 chr2R 8922133 exon Spt - chr2R 8922212 exon Spt - chr2R 8922291 intron Spt - chr2R_5_8920001 chr2R_8920001 RAL-461 675 chr2R 8960446 8960481 chr2R 8960606 8960627 6 166 4.0 2.0 3.0 1.5 181 chr2R 8960446 exon babo + chr2R 8960536 3` UTR babo + chr2R 8960627 3` UTR babo + chr2R_6_8960001 chr2R_8960001 RAL-461 676 chr2R 8976613 8976640 chr2R 8976691 8976739 4 84 3.0 4.0 3.5 0.9 126 chr2R 8976613 intron CG8213 - chr2R 8976676 intron CG8213 - chr2R 8976739 intron CG8213 - chr2R_4_8975001 chr2R_8975001 RAL-461 677 chr2R 8995937 8995966 chr2R 8996044 8996073 6 107 1.0 6.5 3.8 1.2 136 chr2R 8995937 exon Np - chr2R 8996005 intron Np - chr2R 8996073 intron Np - chr2R_6_8995001 chr2R_8995001 RAL-461 678 chr2R 9031386 9031421 chr2R 9031483 9031503 8 93 6.0 0.5 3.2 1.9 117 chr2R 9031386 intergenic CG8170 - chr2R 9031444 intergenic CG8170 - chr2R 9031503 intergenic CG8170 - chr2R_8_9030001 chr2R_9030001 RAL-461 679 chr2R 9065895 9065945 chr2R 9065996 9066047 24 98 4.5 4.0 4.2 4.6 152 chr2R 9065895 intron ana + chr2R 9065971 intron ana + chr2R 9066047 intron ana + chr2R_24_9065001 chr2R_9065001 RAL-461 680 chr2R 9151280 9151334 chr2R 9157770 9157823 Burdock 12 6487 1.5 3.0 2.2 3.8 6543 chr2R 9151280 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157823 intergenic CG8008 - chr2R_12_9150001 chr2R_9150001 RAL-461 681 chr2R 9236587 9236626 chr2R 9236691 9236732 19 102 6.0 3.5 4.8 3.3 145 chr2R 9236587 intron hig - chr2R 9236660 intron hig - chr2R 9236732 intron hig - chr2R_19_9235001 chr2R_9235001 RAL-461 682 chr2R 9340534 9340559 chr2R 9340781 9340829 9 262 1.0 5.5 3.2 2.1 295 chr2R 9340534 intron,intron CG13739 -,CG13954 - chr2R 9340682 intron,intron CG13739 -,CG13954 - chr2R 9340829 intron,intron CG13739 -,CG13954 - chr2R_9_9340001 chr2R_9340001 RAL-461 683 chr2R 9368126 9368152 chr2R 9368212 9368233 4 77 1.5 0.0 0.8 2.2 107 chr2R 9368126 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368233 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-461 684 chr2R 9390870 9390912 chr2R 9390975 9391008 14 105 6.0 3.0 4.5 2.5 138 chr2R 9390870 exon l(2)03659 + chr2R 9390939 intron l(2)03659 + chr2R 9391008 exon l(2)03659 + chr2R_14_9390001 chr2R_9390001 RAL-461 685 chr2R 9412071 9412112 chr2R 9412187 9412201 6 120 2.5 6.0 4.2 1.2 130 chr2R 9412071 intron wun - chr2R 9412136 intron wun - chr2R 9412201 intron wun - chr2R_6_9410001 chr2R_9410001 RAL-461 686 chr2R 9479568 9479605 chr2R 9479668 9479705 15 94 3.5 5.0 4.2 2.9 137 chr2R 9479568 intergenic not near genes chr2R 9479636 intergenic not near genes chr2R 9479705 intergenic not near genes chr2R_15_9475001 chr2R_9475001 RAL-461 687 chr2R 9480063 9480100 chr2R 9490607 9490644 roo 5 10546 8.0 6.0 7.0 0.6 10581 chr2R 9480063 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490644 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-461 688 chr2R 9541610 9541651 chr2R 9541707 9541722 13 91 0.0 4.5 2.2 4.1 112 chr2R 9541610 intergenic brp +,CG1888 - chr2R 9541666 intergenic brp +,CG1888 - chr2R 9541722 intergenic brp +,CG1888 - chr2R_13_9540001 chr2R_9540001 RAL-461 689 chr2R 9605814 9605858 chr2R 9605941 9605985 13 124 7.5 2.0 4.8 2.2 171 chr2R 9605814 3` UTR CR44285 - chr2R 9605900 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605985 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_13_9605001 chr2R_9605001 RAL-461 690 chr2R 9618551 9618560 chr2R 9618799 9618807 5 247 5.0 0.0 2.5 1.4 256 chr2R 9618551 intron Mmp2 - chr2R 9618679 intron Mmp2 - chr2R 9618807 intron Mmp2 - chr2R_5_9615001 chr2R_9615001 RAL-461 691 chr2R 9699401 9699441 chr2R 9699494 9699547 7 100 2.5 2.5 2.5 2.0 146 chr2R 9699401 intergenic not near genes chr2R 9699474 intergenic not near genes chr2R 9699547 intergenic not near genes chr2R_7_9695001 chr2R_9695001 RAL-461 692 chr2R 9726598 9726642 chr2R 9734169 9734190 17.6 12 7568 2.5 5.5 4.0 2.4 7592 chr2R 9726598 intron sqa - chr2R 9730394 intron sqa - chr2R 9734190 intron sqa - chr2R_12_9730001 chr2R_9730001 RAL-461 693 chr2R 9761290 9761292 chr2R 9761383 9761387 4 95 4.0 2.5 3.2 1.0 97 chr2R 9761290 intron trpl + chr2R 9761338 intron trpl + chr2R 9761387 intron trpl + chr2R_4_9760001 chr2R_9760001 RAL-461 694 chr2R 9945419 9945470 chr2R 9945634 9945671 BS 6 211 4.0 1.5 2.8 1.6 252 chr2R 9945419 intron Mef2 - chr2R 9945545 intron Mef2 - chr2R 9945671 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-461 695 chr2R 10117930 10117959 chr2R 10118046 10118079 6 118 6.0 0.5 3.2 1.4 149 chr2R 10117930 intron dmpd + chr2R 10118004 intron dmpd + chr2R 10118079 5` UTR dmpd + chr2R_6_10115001 chr2R_10115001 RAL-461 696 chr2R 10122725 10122751 chr2R 10122955 10122981 8 229 4.0 4.0 4.0 1.6 256 chr2R 10122725 intergenic Ccs - chr2R 10122853 intergenic Ccs - chr2R 10122981 intergenic Ccs - chr2R_8_10120001 chr2R_10120001 RAL-461 697 chr2R 10132171 10132211 chr2R 10132271 10132310 10 100 1.5 2.5 2.0 3.3 139 chr2R 10132171 intron gem + chr2R 10132240 intron gem + chr2R 10132310 exon gem + chr2R_10_10130001 chr2R_10130001 RAL-461 698 chr2R 10155837 10155885 chr2R 10155949 10155999 13 111 5.5 3.0 4.2 2.5 162 chr2R 10155837 intron KCNQ - chr2R 10155918 intron,3` UTR KCNQ -,mlt - chr2R 10155999 intron,3` UTR KCNQ -,mlt - chr2R_13_10155001 chr2R_10155001 RAL-461 699 chr2R 10161276 10161322 chr2R 10161419 10161426 11 139 3.5 3.5 3.5 2.4 150 chr2R 10161276 intron KCNQ - chr2R 10161351 intron KCNQ - chr2R 10161426 intron KCNQ - chr2R_11_10160001 chr2R_10160001 RAL-461 700 chr2R 10176867 10176908 chr2R 10186052 10186098 roo 16 9188 3.5 6.0 4.8 2.8 9231 chr2R 10176867 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186098 intron KCNQ - chr2R_16_10180001 chr2R_10180001 RAL-461 701 chr2R 10189198 10189233 chr2R 10189280 10189331 9 96 2.5 4.5 3.5 2.0 133 chr2R 10189198 intron KCNQ - chr2R 10189264 intron KCNQ - chr2R 10189331 intron KCNQ - chr2R_9_10185001 chr2R_10185001 RAL-461 702 chr2R 10203624 10203658 chr2R 10203729 10203760 12 98 6.5 4.0 5.2 1.9 136 chr2R 10203624 intergenic not near genes chr2R 10203692 intergenic not near genes chr2R 10203760 intergenic not near genes chr2R_12_10200001 chr2R_10200001 RAL-461 703 chr2R 10216169 10216216 chr2R 10216267 10216292 6 89 4.5 1.5 3.0 1.5 123 chr2R 10216169 intron,intron CG12912 -,Hr46 - chr2R 10216230 intron,intron CG12912 -,Hr46 - chr2R 10216292 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-461 704 chr2R 10225712 10225752 chr2R 10225814 10225854 12 102 2.0 4.0 3.0 3.0 142 chr2R 10225712 intron,intron CG12912 -,Hr46 - chr2R 10225783 intron,intron CG12912 -,Hr46 - chr2R 10225854 intron,intron CG12912 -,Hr46 - chr2R_12_10225001 chr2R_10225001 RAL-461 705 chr2R 10257140 10257193 chr2R 10257250 10257304 11 109 3.5 1.0 2.2 3.4 164 chr2R 10257140 intron CG12911 + chr2R 10257222 intron CG12911 + chr2R 10257304 intron CG12911 + chr2R_11_10255001 chr2R_10255001 RAL-461 706 chr2R 10274805 10274825 chr2R 10274900 10274921 7 94 7.0 0.0 3.5 1.6 116 chr2R 10274805 intron CAP + chr2R 10274863 intron CAP + chr2R 10274921 intron CAP + chr2R_7_10270001 chr2R_10270001 RAL-461 707 chr2R 10300624 10300680 chr2R 10300740 10300796 15 110 0.0 0.0 0.0 15.0 172 chr2R 10300624 intron CAP + chr2R 10300710 intron CAP + chr2R 10300796 intron CAP + chr2R_15_10300001 chr2R_10300001 RAL-461 708 chr2R 10322065 10322075 chr2R 10322167 10322177 5 102 2.5 7.0 4.8 0.9 112 chr2R 10322065 3` UTR Ndg + chr2R 10322121 intergenic Ndg + chr2R 10322177 intergenic Ndg + chr2R_5_10320001 chr2R_10320001 RAL-461 709 chr2R 10409044 10409079 chr2R 10409141 10409175 7 96 0.0 4.5 2.2 2.2 131 chr2R 10409044 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409175 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-461 710 chr2R 10429003 10429049 chr2R 10429100 10429120 12 88 8.0 9.0 8.5 1.3 117 chr2R 10429003 intergenic not near genes chr2R 10429062 intergenic not near genes chr2R 10429120 intergenic not near genes chr2R_12_10425001 chr2R_10425001 RAL-461 711 chr2R 10454084 10454127 chr2R 10454175 10454224 14 92 5.5 11.5 8.5 1.5 140 chr2R 10454084 intron,intron Galphao +,Cyp49a1 - chr2R 10454154 intron,intron Galphao +,Cyp49a1 - chr2R 10454224 intron,intron Galphao +,Cyp49a1 - chr2R_14_10450001 chr2R_10450001 RAL-461 712 chr2R 10469007 10469056 chr2R 10469152 10469197 18 143 2.0 3.0 2.5 5.1 190 chr2R 10469007 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469197 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-461 713 chr2R 10551042 10551178 chr2R 10551153 10551317 6 120 0.0 0.0 0.0 6.0 275 chr2R 10551042 intergenic not near genes chr2R 10551180 intergenic not near genes chr2R 10551317 intergenic not near genes chr2R_6_10550001 chr2R_10550001 RAL-461 714 chr2R 10582109 10582138 chr2R 10582209 10582253 7 112 3.5 0.5 2.0 2.3 144 chr2R 10582109 intron psq + chr2R 10582181 intron psq + chr2R 10582253 intron psq + chr2R_7_10580001 chr2R_10580001 RAL-461 715 chr2R 10622364 10622386 chr2R 10637117 10637138 mdg1 6 14754 2.5 5.0 3.8 1.2 14774 chr2R 10622364 intron CG11883 + chr2R 10629751 intron CG11883 + chr2R 10637138 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-461 716 chr2R 10653206 10653231 chr2R 10653305 10653310 4 90 4.0 6.5 5.2 0.6 104 chr2R 10653206 intergenic not near genes chr2R 10653258 intergenic not near genes chr2R 10653310 intergenic not near genes chr2R_4_10650001 chr2R_10650001 RAL-461 717 chr2R 10761539 10761588 chr2R 10761713 10761752 14 170 4.5 3.0 3.8 2.9 213 chr2R 10761539 intron,5` UTR CG33144 -,CR43605 + chr2R 10761646 intron,5` UTR CG33144 -,CR43605 + chr2R 10761752 intron CG33144 - chr2R_14_10760001 chr2R_10760001 RAL-461 718 chr2R 10770981 10771022 chr2R 10771077 10771123 10 95 0.0 5.0 2.5 2.9 142 chr2R 10770981 intron CG33144 - chr2R 10771052 intron CG33144 - chr2R 10771123 intron CG33144 - chr2R_10_10770001 chr2R_10770001 RAL-461 719 chr2R 10827318 10827361 chr2R 10827421 10827449 11 99 3.0 3.0 3.0 2.8 131 chr2R 10827318 exon CG12325 + chr2R 10827384 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-461 720 chr2R 10860578 10860589 chr2R 10860664 10860669 6 87 0.0 0.5 0.2 5.0 91 chr2R 10860578 intron CG30015 - chr2R 10860624 intron CG30015 - chr2R 10860669 intron CG30015 - chr2R_6_10860001 chr2R_10860001 RAL-461 721 chr2R 10947081 10947124 chr2R 10947180 10947222 4 99 4.0 0.0 2.0 1.3 141 chr2R 10947081 5` UTR CR45228 + chr2R 10947152 intergenic CR45228 + chr2R 10947222 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-461 722 chr2R 10948032 10948060 chr2R 10955611 10955619 17.6 5 7574 1.0 4.0 2.5 1.4 7587 chr2R 10948032 intergenic not near genes chr2R 10951826 intergenic not near genes chr2R 10955619 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-461 723 chr2R 10967377 10967393 chr2R 10967570 10967591 9 193 2.5 0.5 1.5 3.6 214 chr2R 10967377 intergenic not near genes chr2R 10967484 intergenic not near genes chr2R 10967591 intergenic not near genes chr2R_9_10965001 chr2R_10965001 RAL-461 724 chr2R 11009795 11009835 chr2R 11018989 11019028 roo 7 9190 3.0 1.5 2.2 2.2 9233 chr2R 11009795 intron luna - chr2R 11014412 intron luna - chr2R 11019028 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-461 725 chr2R 11019894 11019904 chr2R 11024940 11024980 jockey 4 5064 2.0 2.5 2.2 1.2 5086 chr2R 11019894 intron luna - chr2R 11022437 intron luna - chr2R 11024980 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-461 726 chr2R 11059646 11059682 chr2R 11059742 11059779 10 95 4.0 7.5 5.8 1.5 133 chr2R 11059646 intron luna - chr2R 11059712 intron luna - chr2R 11059779 intron luna - chr2R_10_11055001 chr2R_11055001 RAL-461 727 chr2R 11066458 11066468 chr2R 11066540 11066557 4 92 0.0 3.5 1.8 1.4 99 chr2R 11066458 intron luna - chr2R 11066508 intron luna - chr2R 11066557 intron luna - chr2R_4_11065001 chr2R_11065001 RAL-461 728 chr2R 11102855 11102878 chr2R 11102950 11102970 6 99 6.0 0.0 3.0 1.5 115 chr2R 11102855 intron luna - chr2R 11102912 intron luna - chr2R 11102970 intron luna - chr2R_6_11100001 chr2R_11100001 RAL-461 729 chr2R 11144266 11144309 chr2R 11144387 11144430 9 115 6.0 3.5 4.8 1.6 164 chr2R 11144266 intron CG13229 - chr2R 11144348 intron CG13229 - chr2R 11144430 intron CG13229 - chr2R_9_11140001 chr2R_11140001 RAL-461 730 chr2R 11158844 11158893 chr2R 11159033 11159062 15 181 2.0 2.5 2.2 4.7 218 chr2R 11158844 intron CG13229 - chr2R 11158953 intron CG13229 - chr2R 11159062 intron CG13229 - chr2R_15_11155001 chr2R_11155001 RAL-461 731 chr2R 11161102 11161119 chr2R 11161358 11161395 6 263 4.5 4.0 4.2 1.2 293 chr2R 11161102 intron,intron CG13229 -,shn + chr2R 11161248 intron,intron CG13229 -,shn + chr2R 11161395 intron,intron CG13229 -,shn + chr2R_6_11160001 chr2R_11160001 RAL-461 732 chr2R 11168049 11168097 chr2R 11168148 11168193 17 98 3.5 3.0 3.2 4.0 144 chr2R 11168049 intron,intron CG13229 -,shn + chr2R 11168121 intron,intron CG13229 -,shn + chr2R 11168193 intron,intron CG13229 -,shn + chr2R_17_11165001 chr2R_11165001 RAL-461 733 chr2R 11179265 11179287 chr2R 11179356 11179357 9 93 9.0 3.5 6.2 1.2 92 chr2R 11179265 intron shn + chr2R 11179311 intron shn + chr2R 11179357 intron shn + chr2R_9_11175001 chr2R_11175001 RAL-461 734 chr2R 11184672 11184688 chr2R 11184769 11184785 4 97 5.5 3.5 4.5 0.7 113 chr2R 11184672 intron shn + chr2R 11184728 intron shn + chr2R 11184785 intron shn + chr2R_4_11180001 chr2R_11180001 RAL-461 735 chr2R 11192076 11192084 chr2R 11192184 11192191 4 108 7.5 1.0 4.2 0.8 115 chr2R 11192076 intron shn + chr2R 11192134 intron shn + chr2R 11192191 intron shn + chr2R_4_11190001 chr2R_11190001 RAL-461 736 chr2R 11192089 11192121 chr2R 11192182 11192221 5 97 5.0 1.0 3.0 1.2 132 chr2R 11192089 intron shn + chr2R 11192155 intron shn + chr2R 11192221 intron shn + chr2R_5_11190001 chr2R_11190001 RAL-461 737 chr2R 11207827 11207846 chr2R 11208012 11208054 BS 10 199 2.0 6.0 4.0 2.0 227 chr2R 11207827 intron shn + chr2R 11207940 intron shn + chr2R 11208054 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-461 738 chr2R 11276783 11276818 chr2R 11276971 11276981 7 183 4.5 3.5 4.0 1.4 198 chr2R 11276783 intergenic not near genes chr2R 11276882 intergenic not near genes chr2R 11276981 intergenic not near genes chr2R_7_11275001 chr2R_11275001 RAL-461 739 chr2R 11297619 11297637 chr2R 11301963 11301981 flea 10 4342 3.5 0.0 1.8 3.6 4362 chr2R 11297619 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11301981 5` UTR CG7741 + chr2R_10_11295001 chr2R_11295001 RAL-461 740 chr2R 11368009 11368041 chr2R 11368105 11368127 8 95 7.0 4.0 5.5 1.2 118 chr2R 11368009 intron CG13204 + chr2R 11368068 intron CG13204 + chr2R 11368127 intron CG13204 + chr2R_8_11365001 chr2R_11365001 RAL-461 741 chr2R 11415522 11415551 chr2R 11418666 11418700 opus 10 3144 2.5 5.0 3.8 2.1 3178 chr2R 11415522 intron Drip - chr2R 11417111 intron Drip - chr2R 11418700 intron Drip - chr2R_10_11415001 chr2R_11415001 RAL-461 742 chr2R 11472627 11472679 chr2R 11473844 11473886 pogo 14 1211 5.5 5.5 5.5 2.2 1259 chr2R 11472627 intergenic not near genes chr2R 11473256 intergenic not near genes chr2R 11473886 intergenic not near genes chr2R_14_11470001 chr2R_11470001 RAL-461 743 chr2R 11593837 11593890 chr2R 11594933 11594986 17 1093 5.0 3.0 4.0 3.4 1149 chr2R 11593837 intron tou - chr2R 11594412 intron tou - chr2R 11594986 intron tou - chr2R_17_11590001 chr2R_11590001 RAL-461 744 chr2R 11631381 11631409 chr2R 11631481 11631509 17 99 0.0 8.5 4.2 3.3 128 chr2R 11631381 intron CG9005 - chr2R 11631445 intron CG9005 - chr2R 11631509 intron CG9005 - chr2R_17_11630001 chr2R_11630001 RAL-461 745 chr2R 11704881 11704924 chr2R 11708630 11708649 6 3742 1.5 4.0 2.8 1.6 3768 chr2R 11704881 3` UTR CR45377 - chr2R 11706765 intergenic not near genes chr2R 11708649 intergenic not near genes chr2R_6_11705001 chr2R_11705001 RAL-461 746 chr2R 11861972 11862024 chr2R 11862076 11862129 27 103 5.0 6.0 5.5 4.2 157 chr2R 11861972 3` UTR CG34230 + chr2R 11862050 intergenic CG34230 +,TwdlBeta - chr2R 11862129 intergenic CG34230 +,TwdlBeta - chr2R_27_11860001 chr2R_11860001 RAL-461 747 chr2R 12044342 12044378 chr2R 12044447 12044483 9 104 6.5 3.0 4.8 1.6 141 chr2R 12044342 intergenic Drep-1 + chr2R 12044412 intergenic Drep-1 + chr2R 12044483 intergenic Drep-1 + chr2R_9_12040001 chr2R_12040001 RAL-461 748 chr2R 8518782 8518786 chr2R 12066179 12066202 7 3547403 21.0 7.0 14.0 0.5 3547420 chr2R 8518782 intron mtt - chr2R 10292492 intron CAP + chr2R 12066202 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-461 749 chr2R 12146461 12146485 chr2R 12147592 12147612 4 1132 19.0 11.0 15.0 0.2 1151 chr2R 12146461 intron,3` UTR Hen1 +,CG8878 - chr2R 12147036 intron,exon Hen1 +,CG8878 - chr2R 12147612 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-461 750 chr2R 12185981 12186034 chr2R 12186096 12186122 28 105 7.5 9.0 8.2 3.0 141 chr2R 12185981 intron Cyp6g1 + chr2R 12186052 intron Cyp6g1 + chr2R 12186122 intron Cyp6g1 + chr2R_28_12185001 chr2R_12185001 RAL-461 751 chr2R 12187483 12187486 chr2R 12190079 12190099 4 2600 28.0 21.5 24.8 0.2 2616 chr2R 12187483 exon Cyp6g1 + chr2R 12188791 exon Cyp6g2 - chr2R 12190099 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-461 752 chr2R 12187477 12187496 chr2R 12190104 12190122 4 2620 33.0 20.5 26.8 0.1 2645 chr2R 12187477 exon Cyp6g1 + chr2R 12188800 exon Cyp6g2 - chr2R 12190122 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-461 753 chr2R 12210126 12210164 chr2R 12210226 12210254 10 96 0.5 6.0 3.2 2.4 128 chr2R 12210126 exon Sr-CII - chr2R 12210190 intron Sr-CII - chr2R 12210254 intron Sr-CII - chr2R_10_12210001 chr2R_12210001 RAL-461 754 chr2R 12240741 12240758 chr2R 12240837 12240854 4 96 2.5 0.0 1.2 1.8 113 chr2R 12240741 exon CG13170 + chr2R 12240798 3` UTR CG13170 + chr2R 12240854 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-461 755 chr2R 12255703 12255753 chr2R 12255842 12255889 13 136 3.0 5.5 4.2 2.5 186 chr2R 12255703 intergenic CG13168 + chr2R 12255796 intergenic CG13168 + chr2R 12255889 intergenic CG13168 + chr2R_13_12255001 chr2R_12255001 RAL-461 756 chr2R 12272303 12272346 chr2R 12272406 12272424 8 94 2.0 5.5 3.8 1.7 121 chr2R 12272303 intron Cam + chr2R 12272364 intron Cam + chr2R 12272424 intron Cam + chr2R_8_12270001 chr2R_12270001 RAL-461 757 chr2R 12334870 12334881 chr2R 12334968 12334970 4 95 6.0 0.5 3.2 1.0 100 chr2R 12334870 intergenic CG8490 + chr2R 12334920 intergenic CG8490 + chr2R 12334970 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-461 758 chr2R 12363365 12363388 chr2R 12363816 12363840 12 451 9.5 6.0 7.8 1.4 475 chr2R 12363365 intergenic CG30043 + chr2R 12363602 intergenic CG30043 + chr2R 12363840 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-461 759 chr2R 12363390 12363417 chr2R 12363811 12363836 5 437 4.0 5.0 4.5 0.9 446 chr2R 12363390 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363836 intergenic not near genes chr2R_5_12360001 chr2R_12360001 RAL-461 760 chr2R 12377483 12377518 chr2R 12377625 12377660 15 138 6.5 5.5 6.0 2.1 177 chr2R 12377483 intergenic Cpr49Aa + chr2R 12377572 intergenic Cpr49Aa + chr2R 12377660 intergenic Cpr49Aa + chr2R_15_12375001 chr2R_12375001 RAL-461 761 chr2R 12393001 12393021 chr2R 12393801 12393826 12 804 4.5 2.0 3.2 2.9 825 chr2R 12393001 intergenic Or49a + chr2R 12393414 intergenic Or49a + chr2R 12393826 exon Or49a + chr2R_12_12390001 chr2R_12390001 RAL-461 762 chr2R 12492080 12492116 chr2R 12492186 12492215 4 104 5.0 1.5 3.2 1.0 135 chr2R 12492080 intron fdl - chr2R 12492148 intron fdl - chr2R 12492215 intron fdl - chr2R_4_12490001 chr2R_12490001 RAL-461 763 chr2R 12529892 12529907 chr2R 12530005 12530020 4 113 5.0 0.0 2.5 1.1 128 chr2R 12529892 intron fra + chr2R 12529956 intron fra + chr2R 12530020 intron fra + chr2R_4_12525001 chr2R_12525001 RAL-461 764 chr2R 12565547 12565595 chr2R 12565945 12565964 8 375 0.0 3.0 1.5 3.2 417 chr2R 12565547 intergenic not near genes chr2R 12565756 intergenic Cyp301a1 + chr2R 12565964 intergenic Cyp301a1 + chr2R_8_12565001 chr2R_12565001 RAL-461 765 chr2R 12707499 12707544 chr2R 12715885 12715930 roo 17 8385 4.0 3.5 3.8 3.5 8431 chr2R 12707499 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715930 intron CG42663 + chr2R_17_12710001 chr2R_12710001 RAL-461 766 chr2R 12728853 12728905 chr2R 12728976 12729023 5 119 0.0 2.0 1.0 2.5 170 chr2R 12728853 intron CG42663 + chr2R 12728938 intron CG42663 + chr2R 12729023 intron CG42663 + chr2R_5_12725001 chr2R_12725001 RAL-461 767 chr2R 12734353 12734367 chr2R 12734433 12734459 5 91 0.0 3.5 1.8 1.8 106 chr2R 12734353 intron CG42663 + chr2R 12734406 intron CG42663 + chr2R 12734459 intron CG42663 + chr2R_5_12730001 chr2R_12730001 RAL-461 768 chr2R 12819427 12819466 chr2R 12824520 12824558 jockey 10 5090 3.0 1.0 2.0 3.3 5131 chr2R 12819427 intergenic not near genes chr2R 12821992 intergenic not near genes chr2R 12824558 intergenic not near genes chr2R_10_12820001 chr2R_12820001 RAL-461 769 chr2R 12897457 12897465 chr2R 12897567 12897576 4 111 8.0 1.0 4.5 0.7 119 chr2R 12897457 intron vg + chr2R 12897516 intron vg + chr2R 12897576 intron vg + chr2R_4_12895001 chr2R_12895001 RAL-461 770 chr2R 12897467 12897481 chr2R 12897550 12897592 6 106 5.5 1.0 3.2 1.4 125 chr2R 12897467 intron vg + chr2R 12897530 intron vg + chr2R 12897592 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-461 771 chr2R 12903221 12903240 chr2R 12903318 12903348 7 106 0.5 5.0 2.8 1.8 127 chr2R 12903221 intergenic not near genes chr2R 12903284 intergenic not near genes chr2R 12903348 intergenic not near genes chr2R_7_12900001 chr2R_12900001 RAL-461 772 chr2R 12908456 12908500 chr2R 12908560 12908603 9 102 2.0 8.0 5.0 1.5 147 chr2R 12908456 intergenic not near genes chr2R 12908530 intergenic not near genes chr2R 12908603 intergenic not near genes chr2R_9_12905001 chr2R_12905001 RAL-461 773 chr2R 12952823 12952843 chr2R 12952926 12952938 9 103 0.0 2.5 1.2 4.1 115 chr2R 12952823 intergenic CG13321 + chr2R 12952880 intergenic CG13321 + chr2R 12952938 intergenic CG13321 + chr2R_9_12950001 chr2R_12950001 RAL-461 774 chr2R 13009871 13009920 chr2R 13009971 13009979 6 90 1.5 0.0 0.8 3.3 108 chr2R 13009871 intergenic not near genes chr2R 13009925 intergenic not near genes chr2R 13009979 intergenic not near genes chr2R_6_13005001 chr2R_13005001 RAL-461 775 chr2R 13017700 13017747 chr2R 13017799 13017857 14 105 3.5 1.0 2.2 4.4 157 chr2R 13017700 intergenic not near genes chr2R 13017778 intergenic not near genes chr2R 13017857 intergenic not near genes chr2R_14_13015001 chr2R_13015001 RAL-461 776 chr2R 13027728 13027738 chr2R 13027822 13027827 4 92 3.0 1.5 2.2 1.2 99 chr2R 13027728 intergenic not near genes chr2R 13027778 intergenic not near genes chr2R 13027827 intergenic not near genes chr2R_4_13025001 chr2R_13025001 RAL-461 777 chr2R 13136823 13136858 chr2R 13141641 13141676 Doc 8 4816 4.5 3.0 3.8 1.7 4853 chr2R 13136823 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141676 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-461 778 chr2R 13167411 13167444 chr2R 13167525 13167558 9 114 7.0 0.0 3.5 2.0 147 chr2R 13167411 intron GLaz - chr2R 13167484 intron GLaz - chr2R 13167558 intron GLaz - chr2R_9_13165001 chr2R_13165001 RAL-461 779 chr2R 13167445 13167451 chr2R 13167524 13167560 4 102 6.0 0.0 3.0 1.0 115 chr2R 13167445 intron GLaz - chr2R 13167502 intron GLaz - chr2R 13167560 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-461 780 chr2R 13261146 13261175 chr2R 13261251 13261290 11 112 1.0 5.0 3.0 2.8 144 chr2R 13261146 intron CG42319 + chr2R 13261218 intron CG42319 + chr2R 13261290 intron CG42319 + chr2R_11_13260001 chr2R_13260001 RAL-461 781 chr2R 13431469 13431520 chr2R 13431568 13431619 18 96 3.5 2.0 2.8 4.7 150 chr2R 13431469 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431619 intron CG42321 - chr2R_18_13430001 chr2R_13430001 RAL-461 782 chr2R 13432932 13432957 chr2R 13433028 13433053 9 95 5.0 10.0 7.5 1.1 121 chr2R 13432932 intron CG42321 - chr2R 13432992 intron CG42321 - chr2R 13433053 intron,5` UTR CG42321 -,CG30065 + chr2R_9_13430001 chr2R_13430001 RAL-461 783 chr2R 13432959 13432966 chr2R 13433022 13433051 4 85 4.5 8.5 6.5 0.5 92 chr2R 13432959 intron CG42321 - chr2R 13433005 intron CG42321 - chr2R 13433051 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-461 784 chr2R 13439099 13439137 chr2R 13439228 13439295 5 151 4.5 0.0 2.2 1.6 196 chr2R 13439099 intergenic CG42321 -,cnn - chr2R 13439197 intergenic cnn -,CG42321 - chr2R 13439295 intergenic cnn -,CG42321 - chr2R_5_13435001 chr2R_13435001 RAL-461 785 chr2R 13540379 13540419 chr2R 13540649 13540684 8 269 1.5 2.5 2.0 2.7 305 chr2R 13540379 intron CG6145 - chr2R 13540532 intron CG6145 - chr2R 13540684 intron CG6145 - chr2R_8_13540001 chr2R_13540001 RAL-461 786 chr2R 13547079 13547102 chr2R 13547294 13547317 6 215 2.0 7.0 4.5 1.1 238 chr2R 13547079 intron CG6145 - chr2R 13547198 intron CG6145 - chr2R 13547317 intron CG6145 - chr2R_6_13545001 chr2R_13545001 RAL-461 787 chr2R 13566241 13566280 chr2R 13566341 13566349 10 94 5.0 0.0 2.5 2.9 108 chr2R 13566241 intergenic not near genes chr2R 13566295 intergenic not near genes chr2R 13566349 intergenic not near genes chr2R_10_13565001 chr2R_13565001 RAL-461 788 chr2R 13577432 13577464 chr2R 13577509 13577561 4 90 2.0 2.5 2.2 1.2 129 chr2R 13577432 5` UTR CR44365 + chr2R 13577496 5` UTR CR44365 + chr2R 13577561 intergenic CR44365 +,CR44366 + chr2R_4_13575001 chr2R_13575001 RAL-461 789 chr2R 13580483 13580520 chr2R 13580853 13580858 jockey 4 360 1.0 2.0 1.5 1.6 375 chr2R 13580483 3` UTR CG6191 - chr2R 13580670 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580858 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-461 790 chr2R 13663596 13663638 chr2R 13663688 13663710 8 86 1.0 1.5 1.2 3.6 114 chr2R 13663596 intron,5` UTR fas +,CG6209 - chr2R 13663653 intron fas + chr2R 13663710 intron fas + chr2R_8_13660001 chr2R_13660001 RAL-461 791 chr2R 13709832 13709853 chr2R 13709945 13709966 11 112 0.0 8.5 4.2 2.1 134 chr2R 13709832 intron fas + chr2R 13709899 intron fas + chr2R 13709966 intron fas + chr2R_11_13705001 chr2R_13705001 RAL-461 792 chr2R 13728115 13728163 chr2R 13735792 13735830 opus 16 7675 5.0 4.0 4.5 2.9 7715 chr2R 13728115 intron fas + chr2R 13731972 intron fas + chr2R 13735830 intron fas + chr2R_16_13730001 chr2R_13730001 RAL-461 793 chr2R 13749482 13749529 chr2R 13749591 13749626 10 101 2.0 5.0 3.5 2.2 144 chr2R 13749482 intergenic fas + chr2R 13749554 intergenic fas + chr2R 13749626 intergenic fas + chr2R_10_13745001 chr2R_13745001 RAL-461 794 chr2R 13768967 13769001 chr2R 13769086 13769120 6 112 3.5 4.5 4.0 1.2 153 chr2R 13768967 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769120 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-461 795 chr2R 13770520 13770527 chr2R 13770618 13770632 5 107 0.0 12.0 6.0 0.7 112 chr2R 13770520 intron Cpr50Ca + chr2R 13770576 intron Cpr50Ca + chr2R 13770632 intron Cpr50Ca + chr2R_5_13770001 chr2R_13770001 RAL-461 796 chr2R 13817688 13817690 chr2R 13817780 13817789 4 98 0.0 1.5 0.8 2.2 101 chr2R 13817688 intron stj + chr2R 13817738 intron stj + chr2R 13817789 intron stj + chr2R_4_13815001 chr2R_13815001 RAL-461 797 chr2R 13924449 13924455 chr2R 13924585 13924591 4 136 11.0 2.5 6.8 0.5 142 chr2R 13924449 intron shot - chr2R 13924520 intron shot - chr2R 13924591 intron shot - chr2R_4_13920001 chr2R_13920001 RAL-461 798 chr2R 13965726 13965780 chr2R 13966166 13966194 9 435 1.0 3.5 2.2 2.8 468 chr2R 13965726 intron Cp1 + chr2R 13965960 intron Cp1 + chr2R 13966194 intron Cp1 + chr2R_9_13965001 chr2R_13965001 RAL-461 799 chr2R 14018140 14018166 chr2R 14018244 14018244 11 101 10.5 4.0 7.2 1.3 104 chr2R 14018140 intron mam + chr2R 14018192 intron mam + chr2R 14018244 intron mam + chr2R_11_14015001 chr2R_14015001 RAL-461 800 chr2R 14018175 14018184 chr2R 14018237 14018288 5 95 5.5 2.5 4.0 1.0 113 chr2R 14018175 intron mam + chr2R 14018232 intron mam + chr2R 14018288 intron mam + chr2R_5_14015001 chr2R_14015001 RAL-461 801 chr2R 14093419 14093427 chr2R 14109590 14109598 6 16171 4.0 1.0 2.5 1.7 16179 chr2R 14093419 intron Prosap - chr2R 14101508 intron Prosap - chr2R 14109598 intron Prosap - chr2R_6_14100001 chr2R_14100001 RAL-461 802 chr2R 14285027 14285036 chr2R 14285144 14285153 4 117 5.5 3.5 4.5 0.7 126 chr2R 14285027 intron Ih + chr2R 14285090 intron Ih + chr2R 14285153 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-461 803 chr2R 14285044 14285051 chr2R 14285141 14285163 4 109 4.5 3.5 4.0 0.8 119 chr2R 14285044 intron Ih + chr2R 14285104 intron Ih + chr2R 14285163 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-461 804 chr2R 14393845 14393891 chr2R 14393950 14393984 7 102 6.5 2.5 4.5 1.3 139 chr2R 14393845 intergenic not near genes chr2R 14393914 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-461 805 chr2R 14394212 14394237 chr2R 14399021 14399036 Doc 11 4808 4.5 6.0 5.2 1.8 4824 chr2R 14394212 intergenic not near genes chr2R 14396624 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_11_14395001 chr2R_14395001 RAL-461 806 chr2R 14400510 14400547 chr2R 14400603 14400646 13 96 2.0 4.5 3.2 3.1 136 chr2R 14400510 intergenic not near genes chr2R 14400578 intergenic not near genes chr2R 14400646 intergenic not near genes chr2R_13_14400001 chr2R_14400001 RAL-461 807 chr2R 14467303 14467323 chr2R 14476481 14476501 roo 4 9178 1.5 6.5 4.0 0.8 9198 chr2R 14467303 intergenic not near genes chr2R 14471902 intergenic not near genes chr2R 14476501 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-461 808 chr2R 14497369 14497416 chr2R 14498555 14498602 1360 11 1186 1.0 4.5 2.8 2.9 1233 chr2R 14497369 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498602 3` UTR Cpsf160 - chr2R_11_14495001 chr2R_14495001 RAL-461 809 chr2R 14514466 14514499 chr2R 14514579 14514612 10 112 4.5 5.0 4.8 1.7 146 chr2R 14514466 intron,intron Cpr51A -,CG30197 + chr2R 14514539 intron,intron Cpr51A -,CG30197 + chr2R 14514612 intron,intron Cpr51A -,CG30197 + chr2R_10_14510001 chr2R_14510001 RAL-461 810 chr2R 14530346 14530360 chr2R 14530455 14530460 4 107 6.0 4.0 5.0 0.7 114 chr2R 14530346 intron ttv + chr2R 14530403 intron ttv + chr2R 14530460 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-461 811 chr2R 14530739 14530776 chr2R 14530824 14530849 6 84 1.5 3.0 2.2 1.9 110 chr2R 14530739 intron ttv + chr2R 14530794 intron ttv + chr2R 14530849 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-461 812 chr2R 14565547 14565587 chr2R 14565634 14565679 13 88 3.5 3.5 3.5 2.9 132 chr2R 14565547 intron ttv + chr2R 14565613 intron ttv + chr2R 14565679 intron ttv + chr2R_13_14565001 chr2R_14565001 RAL-461 813 chr2R 14566425 14566474 chr2R 14566532 14566576 14 105 5.5 2.5 4.0 2.8 151 chr2R 14566425 intron ttv + chr2R 14566500 intron ttv + chr2R 14566576 intron ttv + chr2R_14_14565001 chr2R_14565001 RAL-461 814 chr2R 14659312 14659332 chr2R 14659411 14659431 4 98 8.0 5.5 6.8 0.5 119 chr2R 14659312 intergenic not near genes chr2R 14659372 intergenic not near genes chr2R 14659431 intergenic not near genes chr2R_4_14655001 chr2R_14655001 RAL-461 815 chr2R 14710646 14710683 chr2R 14710772 14710809 4 124 2.5 1.0 1.8 1.4 163 chr2R 14710646 intron mspo - chr2R 14710728 intron mspo - chr2R 14710809 intron mspo - chr2R_4_14710001 chr2R_14710001 RAL-461 816 chr2R 14796321 14796360 chr2R 14796438 14796467 9 111 3.0 2.0 2.5 2.6 146 chr2R 14796321 intron kn - chr2R 14796394 intron kn - chr2R 14796467 intron kn - chr2R_9_14795001 chr2R_14795001 RAL-461 817 chr2R 14855014 14855056 chr2R 14855126 14855157 11 104 2.0 1.0 1.5 4.4 143 chr2R 14855014 5` UTR Ciao1 - chr2R 14855086 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_11_14855001 chr2R_14855001 RAL-461 818 chr2R 14873669 14873720 chr2R 14875207 14875252 19 1531 1.5 0.5 1.0 9.5 1583 chr2R 14873669 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874460 exon Cyp6a17 + chr2R 14875252 exon Cyp6a17 + chr2R_19_14870001 chr2R_14870001 RAL-461 819 chr2R 14889200 14889236 chr2R 14897818 14897819 Max-element 14 8619 7.0 0.0 3.5 3.1 8619 chr2R 14889200 intergenic Cyp6a8 - chr2R 14893510 intergenic not near genes chr2R 14897819 intergenic not near genes chr2R_14_14890001 chr2R_14890001 RAL-461 820 chr2R 14911680 14911728 chr2R 14911823 14911871 12 143 1.5 4.0 2.8 3.2 191 chr2R 14911680 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911871 intron CG10249 - chr2R_12_14910001 chr2R_14910001 RAL-461 821 chr2R 14916537 14916554 chr2R 14916637 14916654 6 100 5.0 3.5 4.2 1.2 117 chr2R 14916537 intron CG10249 - chr2R 14916596 intron CG10249 - chr2R 14916654 intron CG10249 - chr2R_6_14915001 chr2R_14915001 RAL-461 822 chr2R 14919033 14919175 chr2R 14919133 14919304 14 114 0.0 0.0 0.0 14.0 271 chr2R 14919033 intron CG10249 - chr2R 14919168 intron CG10249 - chr2R 14919304 intron CG10249 - chr2R_14_14915001 chr2R_14915001 RAL-461 823 chr2R 14922128 14922173 chr2R 14922223 14922254 17 90 4.0 3.5 3.8 3.5 126 chr2R 14922128 intron CG10249 - chr2R 14922191 intron CG10249 - chr2R 14922254 intron CG10249 - chr2R_17_14920001 chr2R_14920001 RAL-461 824 chr2R 15004709 15004754 chr2R 15005058 15005091 jockey 8 345 6.5 5.0 5.8 1.2 382 chr2R 15004709 intergenic not near genes chr2R 15004900 intergenic not near genes chr2R 15005091 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-461 825 chr2R 15015454 15015472 chr2R 15022893 15022916 mdg1 6 7443 3.0 3.0 3.0 1.5 7462 chr2R 15015454 intron hbs + chr2R 15019185 intron hbs + chr2R 15022916 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-461 826 chr2R 15015478 15015489 chr2R 15022887 15022924 mdg1 5 7431 3.0 3.0 3.0 1.2 7446 chr2R 15015478 intron hbs + chr2R 15019201 intron hbs + chr2R 15022924 intron hbs + chr2R_5_15015001 chr2R_15015001 RAL-461 827 chr2R 15051083 15051090 chr2R 15051178 15051192 5 98 7.0 8.5 7.8 0.6 109 chr2R 15051083 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051192 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-461 828 chr2R 15051092 15051110 chr2R 15051169 15051212 6 98 5.0 6.0 5.5 0.9 120 chr2R 15051092 intergenic not near genes chr2R 15051152 intergenic not near genes chr2R 15051212 intergenic not near genes chr2R_6_15050001 chr2R_15050001 RAL-461 829 chr2R 15065637 15065647 chr2R 15065694 15065745 4 75 0.0 1.0 0.5 2.7 108 chr2R 15065637 intergenic not near genes chr2R 15065691 intergenic not near genes chr2R 15065745 intergenic not near genes chr2R_4_15065001 chr2R_15065001 RAL-461 830 chr2R 15073102 15073119 chr2R 15073205 15073222 6 103 6.5 3.0 4.8 1.0 120 chr2R 15073102 intergenic not near genes chr2R 15073162 intergenic not near genes chr2R 15073222 intergenic not near genes chr2R_6_15070001 chr2R_15070001 RAL-461 831 chr2R 15084975 15084987 chr2R 15092029 15092055 297 6 7065 5.0 2.0 3.5 1.3 7080 chr2R 15084975 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-461 832 chr2R 15084992 15085000 chr2R 15092026 15092069 297 4 7060 5.0 1.5 3.2 1.0 7077 chr2R 15084992 intergenic not near genes chr2R 15088530 intergenic not near genes chr2R 15092069 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-461 833 chr2R 15119315 15119332 chr2R 15127801 15127833 Tirant 5 8495 2.5 2.5 2.5 1.4 8518 chr2R 15119315 intron chn + chr2R 15123574 intron chn + chr2R 15127833 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-461 834 chr2R 15133465 15133512 chr2R 15133564 15133583 5 88 8.0 5.5 6.8 0.6 118 chr2R 15133465 intron chn + chr2R 15133524 intron chn + chr2R 15133583 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-461 835 chr2R 15137971 15137998 chr2R 15138048 15138100 8 92 4.5 0.5 2.5 2.3 129 chr2R 15137971 intron chn + chr2R 15138036 intron chn + chr2R 15138100 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-461 836 chr2R 15183017 15183070 chr2R 15183128 15183136 15 99 5.0 3.0 4.0 3.0 119 chr2R 15183017 intron igl + chr2R 15183076 intron igl + chr2R 15183136 intron igl + chr2R_15_15180001 chr2R_15180001 RAL-461 837 chr2R 15259044 15259093 chr2R 15259148 15259177 17 99 3.0 5.5 4.2 3.3 133 chr2R 15259044 intron ItgalphaPS4 + chr2R 15259110 intron ItgalphaPS4 + chr2R 15259177 intron ItgalphaPS4 + chr2R_17_15255001 chr2R_15255001 RAL-461 838 chr2R 15296152 15296172 chr2R 15296255 15296264 6 101 3.0 4.0 3.5 1.3 112 chr2R 15296152 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296264 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-461 839 chr2R 15396298 15396351 chr2R 15396507 15396543 25 207 5.0 6.0 5.5 3.8 245 chr2R 15396298 intergenic not near genes chr2R 15396420 intergenic not near genes chr2R 15396543 intergenic not near genes chr2R_25_15395001 chr2R_15395001 RAL-461 840 chr2R 15410764 15410787 chr2R 15410976 15410999 5 212 8.5 3.5 6.0 0.7 235 chr2R 15410764 intron CG43729 + chr2R 15410882 intron CG43729 + chr2R 15410999 intron CG43729 + chr2R_5_15410001 chr2R_15410001 RAL-461 841 chr2R 15410792 15410796 chr2R 15410974 15411008 5 206 7.5 3.5 5.5 0.8 216 chr2R 15410792 intron CG43729 + chr2R 15410900 intron CG43729 + chr2R 15411008 intron CG43729 + chr2R_5_15410001 chr2R_15410001 RAL-461 842 chr2R 15430124 15430174 chr2R 15430280 15430332 12 153 4.5 3.5 4.0 2.4 208 chr2R 15430124 intron CG43729 + chr2R 15430228 intron CG43729 + chr2R 15430332 intron CG43729 + chr2R_12_15430001 chr2R_15430001 RAL-461 843 chr2R 15685344 15685393 chr2R 15685467 15685512 9 122 1.5 1.0 1.2 4.1 168 chr2R 15685344 intron,exon Ranbp11 +,CG30082 - chr2R 15685428 intron,intron Ranbp11 +,CG30082 - chr2R 15685512 intron,intron Ranbp11 +,CG30082 - chr2R_9_15685001 chr2R_15685001 RAL-461 844 chr2R 15700223 15700234 chr2R 15700358 15700369 7 135 6.0 5.0 5.5 1.1 146 chr2R 15700223 intron,5` UTR CG30080 -,CG42662 - chr2R 15700296 intron,5` UTR CG30080 -,CG42662 - chr2R 15700369 intron,5` UTR CG30080 -,CG42662 - chr2R_7_15700001 chr2R_15700001 RAL-461 845 chr2R 15700238 15700272 chr2R 15700353 15700387 6 122 3.5 4.0 3.8 1.2 149 chr2R 15700238 intron,5` UTR CG30080 -,CG42662 - chr2R 15700312 intron,5` UTR CG30080 -,CG42662 - chr2R 15700387 intron,5` UTR CG30080 -,CG42662 - chr2R_6_15700001 chr2R_15700001 RAL-461 846 chr2R 15720748 15720795 chr2R 15720864 15720911 5 116 4.0 1.5 2.8 1.3 163 chr2R 15720748 intergenic not near genes chr2R 15720830 intergenic not near genes chr2R 15720911 intergenic not near genes chr2R_5_15720001 chr2R_15720001 RAL-461 847 chr2R 15833505 15833542 chr2R 15833612 15833630 4 94 2.5 1.5 2.0 1.3 125 chr2R 15833505 intron,intron tun +,Poxn - chr2R 15833568 intron,intron tun +,Poxn - chr2R 15833630 intron,intron tun +,Poxn - chr2R_4_15830001 chr2R_15830001 RAL-461 848 chr2R 15869320 15869369 chr2R 15869420 15869469 10 100 0.0 4.0 2.0 3.3 149 chr2R 15869320 intergenic Rif1 -,sli - chr2R 15869394 intergenic sli -,Rif1 - chr2R 15869469 intergenic sli -,Rif1 - chr2R_10_15865001 chr2R_15865001 RAL-461 849 chr2R 15898863 15898899 chr2R 15898981 15899017 12 116 5.0 3.0 4.0 2.4 154 chr2R 15898863 intron sli - chr2R 15898940 intron sli - chr2R 15899017 intron sli - chr2R_12_15895001 chr2R_15895001 RAL-461 850 chr2R 15903191 15903220 chr2R 15903276 15903314 4 92 2.0 3.5 2.8 1.1 123 chr2R 15903191 intron sli - chr2R 15903252 intron sli - chr2R 15903314 intron sli - chr2R_4_15900001 chr2R_15900001 RAL-461 851 chr2R 16245413 16245431 chr2R 16245522 16245543 7 113 0.5 4.0 2.2 2.2 130 chr2R 16245413 intron CngA - chr2R 16245478 intron CngA - chr2R 16245543 intron CngA - chr2R_7_16245001 chr2R_16245001 RAL-461 852 chr2R 16352855 16352868 chr2R 16352958 16352971 5 103 1.5 7.5 4.5 0.9 116 chr2R 16352855 intergenic not near genes chr2R 16352913 intergenic not near genes chr2R 16352971 intergenic not near genes chr2R_5_16350001 chr2R_16350001 RAL-461 853 chr2R 16380107 16380156 chr2R 16380225 16380249 10 108 2.0 2.5 2.2 3.1 142 chr2R 16380107 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380178 3` UTR CR45317 - chr2R 16380249 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_10_16380001 chr2R_16380001 RAL-461 854 chr2R 16480742 16480773 chr2R 16480838 16480869 4 96 3.5 9.0 6.2 0.6 127 chr2R 16480742 intergenic not near genes chr2R 16480806 intergenic not near genes chr2R 16480869 intergenic not near genes chr2R_4_16480001 chr2R_16480001 RAL-461 855 chr2R 16489262 16489292 chr2R 16489366 16489395 7 104 8.0 3.5 5.8 1.0 133 chr2R 16489262 intergenic CG33459 + chr2R 16489328 intergenic CG33459 + chr2R 16489395 intergenic CG33459 + chr2R_7_16485001 chr2R_16485001 RAL-461 856 chr2R 16518028 16518040 chr2R 16518124 16518130 6 95 10.5 5.5 8.0 0.7 102 chr2R 16518028 intron Sema-2a + chr2R 16518079 intron Sema-2a + chr2R 16518130 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-461 857 chr2R 16539619 16539667 chr2R 16544848 16544896 copia 13 5229 3.5 2.5 3.0 3.2 5277 chr2R 16539619 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544896 intergenic not near genes chr2R_13_16540001 chr2R_16540001 RAL-461 858 chr2R 16546979 16547016 chr2R 16547079 16547116 5 94 0.5 0.0 0.2 4.2 137 chr2R 16546979 intergenic not near genes chr2R 16547048 intergenic not near genes chr2R 16547116 intergenic not near genes chr2R_5_16545001 chr2R_16545001 RAL-461 859 chr2R 16571852 16571904 chr2R 16571967 16572002 23 110 3.5 6.0 4.8 4.0 150 chr2R 16571852 intergenic CG4927 + chr2R 16571927 intergenic CG4927 + chr2R 16572002 intergenic CG4927 + chr2R_23_16570001 chr2R_16570001 RAL-461 860 chr2R 16775643 16775673 chr2R 16775922 16775944 11 279 3.0 6.0 4.5 2.0 301 chr2R 16775643 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775944 intergenic Arp53D + chr2R_11_16775001 chr2R_16775001 RAL-461 861 chr2R 16787465 16787487 chr2R 16787563 16787589 7 101 6.5 2.0 4.2 1.3 124 chr2R 16787465 intron CG5522 + chr2R 16787527 intron CG5522 + chr2R 16787589 intron CG5522 + chr2R_7_16785001 chr2R_16785001 RAL-461 862 chr2R 16880017 16880064 chr2R 16880114 16880161 10 94 4.5 0.5 2.5 2.9 144 chr2R 16880017 intron CG8910 - chr2R 16880089 intron CG8910 - chr2R 16880161 intron CG8910 - chr2R_10_16880001 chr2R_16880001 RAL-461 863 chr2R 16893770 16893803 chr2R 16893872 16893906 12 98 2.0 8.0 5.0 2.0 136 chr2R 16893770 intron CG8910 - chr2R 16893838 intron CG8910 - chr2R 16893906 intron CG8910 - chr2R_12_16890001 chr2R_16890001 RAL-461 864 chr2R 16981950 16982098 chr2R 16982083 16982196 9 115 0.0 0.0 0.0 9.0 246 chr2R 16981950 intron Cbp53E + chr2R 16982073 intron Cbp53E + chr2R 16982196 intron Cbp53E + chr2R_9_16980001 chr2R_16980001 RAL-461 865 chr2R 16983602 16983642 chr2R 16983703 16983733 6 97 3.0 1.5 2.2 1.9 131 chr2R 16983602 intron Cbp53E + chr2R 16983668 intron Cbp53E + chr2R 16983733 intron Cbp53E + chr2R_6_16980001 chr2R_16980001 RAL-461 866 chr2R 16986222 16986271 chr2R 16986341 16986390 14 114 1.0 4.5 2.8 3.7 168 chr2R 16986222 intron Cbp53E + chr2R 16986306 intron Cbp53E + chr2R 16986390 intron Cbp53E + chr2R_14_16985001 chr2R_16985001 RAL-461 867 chr2R 17079034 17079087 chr2R 17079135 17079188 11 100 0.5 4.0 2.2 3.4 154 chr2R 17079034 intron CG30460 - chr2R 17079111 intron CG30460 - chr2R 17079188 intron CG30460 - chr2R_11_17075001 chr2R_17075001 RAL-461 868 chr2R 17139131 17139180 chr2R 17139237 17139291 18 107 6.0 4.0 5.0 3.0 160 chr2R 17139131 3` UTR CG11395 + chr2R 17139211 3` UTR CG11395 + chr2R 17139291 3` UTR CG11395 + chr2R_18_17135001 chr2R_17135001 RAL-461 869 chr2R 17147227 17147265 chr2R 17152278 17152309 jockey 8 5048 3.5 5.5 4.5 1.5 5082 chr2R 17147227 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152309 intergenic not near genes chr2R_8_17145001 chr2R_17145001 RAL-461 870 chr2R 17188716 17188744 chr2R 17188824 17188852 13 107 3.0 1.5 2.2 4.1 136 chr2R 17188716 intergenic CR44389 - chr2R 17188784 intergenic CR44389 - chr2R 17188852 3` UTR CR44389 - chr2R_13_17185001 chr2R_17185001 RAL-461 871 chr2R 17207292 17207310 chr2R 17207409 17207427 5 117 6.0 0.0 3.0 1.2 135 chr2R 17207292 intergenic not near genes chr2R 17207360 intergenic not near genes chr2R 17207427 intergenic not near genes chr2R_5_17205001 chr2R_17205001 RAL-461 872 chr2R 17236494 17236525 chr2R 17241718 17241742 copia 5 5221 3.0 3.0 3.0 1.2 5248 chr2R 17236494 intron mbl + chr2R 17239118 intron mbl + chr2R 17241742 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-461 873 chr2R 17383941 17383985 chr2R 17384049 17384093 10 107 1.5 4.5 3.0 2.5 152 chr2R 17383941 intergenic not near genes chr2R 17384017 intergenic not near genes chr2R 17384093 intergenic not near genes chr2R_10_17380001 chr2R_17380001 RAL-461 874 chr2R 17458987 17459035 chr2R 17459098 17459140 10 105 0.0 8.5 4.2 1.9 153 chr2R 17458987 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459140 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-461 875 chr2R 17470326 17470355 chr2R 17470420 17470454 9 100 1.0 1.0 1.0 4.5 128 chr2R 17470326 intron qkr54B + chr2R 17470390 intron qkr54B + chr2R 17470454 intron qkr54B + chr2R_9_17470001 chr2R_17470001 RAL-461 876 chr2R 17485910 17485934 chr2R 17490678 17490715 F-element 12 4777 7.5 5.0 6.2 1.7 4805 chr2R 17485910 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490715 intron NT5E-2 + chr2R_12_17485001 chr2R_17485001 RAL-461 877 chr2R 17556439 17556459 chr2R 17556531 17556560 10 103 2.0 4.0 3.0 2.5 121 chr2R 17556439 intergenic MESR4 + chr2R 17556500 intergenic MESR4 + chr2R 17556560 intergenic MESR4 +,Klp54D + chr2R_10_17555001 chr2R_17555001 RAL-461 878 chr2R 17640100 17640132 chr2R 17640351 17640386 8 247 2.0 4.5 3.2 1.9 286 chr2R 17640100 intergenic not near genes chr2R 17640243 intergenic not near genes chr2R 17640386 intergenic not near genes chr2R_8_17640001 chr2R_17640001 RAL-461 879 chr2R 17659032 17659063 chr2R 17659137 17659170 5 107 4.0 5.5 4.8 0.9 138 chr2R 17659032 intron CCHa1-R - chr2R 17659101 intron CCHa1-R - chr2R 17659170 intron CCHa1-R - chr2R_5_17655001 chr2R_17655001 RAL-461 880 chr2R 17709979 17710120 chr2R 17710070 17710177 11 89 1.5 1.0 1.2 5.0 198 chr2R 17709979 intron CG6424 - chr2R 17710078 intron CG6424 - chr2R 17710177 intron CG6424 - chr2R_11_17710001 chr2R_17710001 RAL-461 881 chr2R 17782342 17782392 chr2R 17783565 17783615 pogo 10 1220 2.5 3.5 3.0 2.5 1273 chr2R 17782342 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783615 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-461 882 chr2R 17784004 17784055 chr2R 17784265 17784301 pogo 11 257 3.0 3.0 3.0 2.8 297 chr2R 17784004 intergenic mir-31a - chr2R 17784152 intergenic mir-31a - chr2R 17784301 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-461 883 chr2R 17872075 17872127 chr2R 17872182 17872234 16 104 1.5 4.5 3.0 4.0 159 chr2R 17872075 intergenic Mapmodulin - chr2R 17872154 intergenic Mapmodulin - chr2R 17872234 intergenic Mapmodulin - chr2R_16_17870001 chr2R_17870001 RAL-461 884 chr2R 18026678 18026716 chr2R 18026773 18026798 4 87 1.5 3.0 2.2 1.2 120 chr2R 18026678 intergenic not near genes chr2R 18026738 intergenic not near genes chr2R 18026798 intergenic not near genes chr2R_4_18025001 chr2R_18025001 RAL-461 885 chr2R 18027702 18027715 chr2R 18027799 18027819 5 102 2.0 2.0 2.0 1.7 117 chr2R 18027702 intergenic not near genes chr2R 18027760 intergenic not near genes chr2R 18027819 intergenic not near genes chr2R_5_18025001 chr2R_18025001 RAL-461 886 chr2R 18045652 18045701 chr2R 18046024 18046062 jockey 19 371 4.0 5.5 4.8 3.3 410 chr2R 18045652 intergenic not near genes chr2R 18045857 intergenic not near genes chr2R 18046062 intergenic CG5767 - chr2R_19_18045001 chr2R_18045001 RAL-461 887 chr2R 18111692 18111713 chr2R 18115565 18115593 F-element 7 3885 0.5 4.5 2.5 2.0 3901 chr2R 18111692 intergenic not near genes chr2R 18113642 intergenic not near genes chr2R 18115593 intergenic not near genes chr2R_7_18110001 chr2R_18110001 RAL-461 888 chr2R 18124318 18124366 chr2R 18124415 18124463 18 94 5.5 2.5 4.0 3.6 145 chr2R 18124318 intron stau - chr2R 18124390 intron stau - chr2R 18124463 intron stau - chr2R_18_18120001 chr2R_18120001 RAL-461 889 chr2R 18204120 18204156 chr2R 18204225 18204261 9 104 1.0 0.0 0.5 6.0 141 chr2R 18204120 intergenic not near genes chr2R 18204190 intergenic not near genes chr2R 18204261 intergenic not near genes chr2R_9_18200001 chr2R_18200001 RAL-461 890 chr2R 18255679 18255723 chr2R 18255908 18255956 12 230 0.5 1.0 0.8 6.7 277 chr2R 18255679 intergenic not near genes chr2R 18255818 intergenic not near genes chr2R 18255956 intergenic not near genes chr2R_12_18255001 chr2R_18255001 RAL-461 891 chr2R 18320060 18320078 chr2R 18320193 18320206 6 131 0.5 0.0 0.2 5.0 146 chr2R 18320060 intron sbb - chr2R 18320133 intron sbb - chr2R 18320206 intron sbb - chr2R_6_18320001 chr2R_18320001 RAL-461 892 chr2R 18358380 18358401 chr2R 18372605 18372633 roo 7 14229 5.0 0.0 2.5 2.0 14253 chr2R 18358380 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-461 893 chr2R 18390850 18390900 chr2R 18390957 18391007 9 102 4.0 3.0 3.5 2.0 157 chr2R 18390850 intergenic CG15068 - chr2R 18390928 intergenic CG15068 - chr2R 18391007 intergenic CG15068 - chr2R_9_18390001 chr2R_18390001 RAL-461 894 chr2R 18398146 18398184 chr2R 18398254 18398293 7 111 9.5 3.0 6.2 1.0 147 chr2R 18398146 intron GstE10 - chr2R 18398220 intron GstE10 - chr2R 18398293 intron GstE10 - chr2R_7_18395001 chr2R_18395001 RAL-461 895 chr2R 18405734 18405787 chr2R 18405828 18405887 9 96 4.5 1.5 3.0 2.2 153 chr2R 18405734 intergenic GstE6 +,GstE5 + chr2R 18405810 intergenic GstE6 +,GstE5 + chr2R 18405887 intergenic GstE6 + chr2R_9_18405001 chr2R_18405001 RAL-461 896 chr2R 18408275 18408313 chr2R 18408402 18408454 8 130 3.0 3.5 3.2 1.9 179 chr2R 18408275 exon GstE8 + chr2R 18408364 exon GstE8 + chr2R 18408454 exon GstE8 + chr2R_8_18405001 chr2R_18405001 RAL-461 897 chr2R 18480441 18480486 chr2R 18480568 18480613 4 127 0.5 0.5 0.5 2.7 172 chr2R 18480441 intron CG30116 - chr2R 18480527 intron CG30116 - chr2R 18480613 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-461 898 chr2R 18484546 18484586 chr2R 18484666 18484707 11 119 3.5 2.0 2.8 2.9 161 chr2R 18484546 intron CG30116 - chr2R 18484626 intron CG30116 - chr2R 18484707 intron CG30116 - chr2R_11_18480001 chr2R_18480001 RAL-461 899 chr2R 18486838 18486861 chr2R 18487120 18487123 5 277 7.5 8.0 7.8 0.6 285 chr2R 18486838 intron CG30116 - chr2R 18486980 intron CG30116 - chr2R 18487123 intron CG30116 - chr2R_5_18485001 chr2R_18485001 RAL-461 900 chr2R 18486865 18486879 chr2R 18487113 18487161 8 271 4.5 6.0 5.2 1.3 296 chr2R 18486865 intron CG30116 - chr2R 18487013 intron CG30116 - chr2R 18487161 intron CG30116 - chr2R_8_18485001 chr2R_18485001 RAL-461 901 chr2R 18557374 18557415 chr2R 18557505 18557546 12 130 5.0 2.5 3.8 2.5 172 chr2R 18557374 intron GEFmeso - chr2R 18557460 intron GEFmeso - chr2R 18557546 intron GEFmeso - chr2R_12_18555001 chr2R_18555001 RAL-461 902 chr2R 18575810 18575811 chr2R 18581986 18582019 3S18 4 6190 2.0 5.5 3.8 0.8 6209 chr2R 18575810 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-461 903 chr2R 18575812 18575829 chr2R 18581984 18582037 3S18 6 6192 1.0 5.5 3.2 1.4 6225 chr2R 18575812 intron GEFmeso - chr2R 18578924 intron GEFmeso - chr2R 18582037 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-461 904 chr2R 18713218 18713266 chr2R 18713315 18713363 11 95 5.0 3.0 4.0 2.2 145 chr2R 18713218 intergenic not near genes chr2R 18713290 intergenic not near genes chr2R 18713363 intergenic not near genes chr2R_11_18710001 chr2R_18710001 RAL-461 905 chr2R 18785923 18785941 chr2R 18786012 18786040 4 96 2.0 5.0 3.5 0.9 117 chr2R 18785923 intron CG15080 + chr2R 18785982 intron CG15080 + chr2R 18786040 intron CG15080 + chr2R_4_18785001 chr2R_18785001 RAL-461 906 chr2R 18819058 18819066 chr2R 18819150 18819163 4 96 0.5 0.0 0.2 3.3 105 chr2R 18819058 intergenic Phb2 + chr2R 18819110 intergenic Phb2 + chr2R 18819163 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-461 907 chr2R 18857401 18857405 chr2R 18857483 18857501 4 91 1.0 3.0 2.0 1.3 100 chr2R 18857401 exon Jheh2 - chr2R 18857451 intron Jheh2 - chr2R 18857501 intron Jheh2 - chr2R_4_18855001 chr2R_18855001 RAL-461 908 chr2R 18862297 18862407 chr2R 18862404 18862511 4 104 0.5 0.5 0.5 2.7 214 chr2R 18862297 intergenic Jheh3 - chr2R 18862404 intergenic Jheh3 -,CG43069 + chr2R 18862511 intergenic CG43069 +,Jheh3 - chr2R_4_18860001 chr2R_18860001 RAL-461 909 chr2R 18926499 18926521 chr2R 18926596 18926628 7 102 2.0 1.5 1.8 2.5 129 chr2R 18926499 intron sano + chr2R 18926564 intron sano + chr2R 18926628 intron sano + chr2R_7_18925001 chr2R_18925001 RAL-461 910 chr2R 18930437 18930483 chr2R 18930550 18930596 10 112 3.0 5.0 4.0 2.0 159 chr2R 18930437 intron sano + chr2R 18930516 intron sano + chr2R 18930596 intron sano + chr2R_10_18930001 chr2R_18930001 RAL-461 911 chr2R 18953146 18953167 chr2R 18953253 18953274 4 106 6.5 5.5 6.0 0.6 128 chr2R 18953146 intron sano + chr2R 18953210 intron sano + chr2R 18953274 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-461 912 chr2R 18953170 18953191 chr2R 18953252 18953261 14 100 2.5 5.0 3.8 2.9 91 chr2R 18953170 intron sano + chr2R 18953216 intron sano + chr2R 18953261 intron sano + chr2R_14_18950001 chr2R_18950001 RAL-461 913 chr2R 18988999 18989045 chr2R 18989097 18989143 17 94 3.5 5.0 4.2 3.3 144 chr2R 18988999 intron tn + chr2R 18989071 intron tn + chr2R 18989143 intron tn + chr2R_17_18985001 chr2R_18985001 RAL-461 914 chr2R 19012923 19012967 chr2R 19013037 19013081 8 111 5.0 5.5 5.2 1.3 158 chr2R 19012923 intergenic not near genes chr2R 19013002 intergenic not near genes chr2R 19013081 intergenic not near genes chr2R_8_19010001 chr2R_19010001 RAL-461 915 chr2R 19026028 19026061 chr2R 19026188 19026221 6 160 4.5 4.5 4.5 1.1 193 chr2R 19026028 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026221 intron 5-HT1B - chr2R_6_19025001 chr2R_19025001 RAL-461 916 chr2R 19168719 19168767 chr2R 19168820 19168870 5 97 0.5 2.0 1.2 2.3 151 chr2R 19168719 intron CG10737 + chr2R 19168794 intron CG10737 + chr2R 19168870 intron CG10737 + chr2R_5_19165001 chr2R_19165001 RAL-461 917 chr2R 19300943 19300994 chr2R 19301046 19301097 17 100 4.0 4.5 4.2 3.3 154 chr2R 19300943 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301097 intron Tab2 + chr2R_17_19300001 chr2R_19300001 RAL-461 918 chr2R 19334631 19334674 chr2R 19334727 19334760 12 90 2.0 2.0 2.0 4.0 129 chr2R 19334631 intron,intron Rgk1 -,CG34045 + chr2R 19334696 intron,intron Rgk1 -,CG34045 + chr2R 19334760 intron,exon Rgk1 -,CG34045 + chr2R_12_19330001 chr2R_19330001 RAL-461 919 chr2R 19401629 19401649 chr2R 19401708 19401755 4 94 4.5 4.0 4.2 0.8 126 chr2R 19401629 intron hts - chr2R 19401692 intron hts - chr2R 19401755 intron hts - chr2R_4_19400001 chr2R_19400001 RAL-461 920 chr2R 19539128 19539170 chr2R 19539239 19539257 6 104 3.0 3.0 3.0 1.5 129 chr2R 19539128 intron sm - chr2R 19539192 intron sm - chr2R 19539257 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-461 921 chr2R 19588732 19588780 chr2R 19588830 19588878 12 96 0.5 3.0 1.8 4.3 146 chr2R 19588732 intron sm - chr2R 19588805 intron sm - chr2R 19588878 intron sm - chr2R_12_19585001 chr2R_19585001 RAL-461 922 chr2R 19699881 19699919 chr2R 19699986 19700023 6 105 6.5 7.0 6.8 0.8 142 chr2R 19699881 intergenic Obp56c - chr2R 19699952 intergenic Obp56c - chr2R 19700023 3` UTR Obp56c - chr2R_6_19695001 chr2R_19695001 RAL-461 923 chr2R 19776580 19776630 chr2R 19779918 19779943 jockey 10 3337 5.0 6.5 5.8 1.5 3363 chr2R 19776580 intergenic not near genes chr2R 19778262 intergenic not near genes chr2R 19779943 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-461 924 chr2R 19909460 19909488 chr2R 19909557 19909587 6 97 3.5 4.5 4.0 1.2 127 chr2R 19909460 intergenic CR44573 - chr2R 19909524 intergenic CR44573 - chr2R 19909587 intergenic CR44573 - chr2R_6_19905001 chr2R_19905001 RAL-461 925 chr2R 19930818 19930838 chr2R 19931212 19931230 5 393 8.5 5.5 7.0 0.6 412 chr2R 19930818 intergenic not near genes chr2R 19931024 intergenic not near genes chr2R 19931230 intergenic not near genes chr2R_5_19930001 chr2R_19930001 RAL-461 926 chr2R 19930840 19930862 chr2R 19931206 19931216 7 381 4.5 4.0 4.2 1.3 376 chr2R 19930840 intergenic not near genes chr2R 19931028 intergenic not near genes chr2R 19931216 intergenic not near genes chr2R_7_19930001 chr2R_19930001 RAL-461 927 chr2R 20029420 20029448 chr2R 20029515 20029537 6 95 3.5 0.5 2.0 2.0 117 chr2R 20029420 intergenic not near genes chr2R 20029478 intergenic not near genes chr2R 20029537 intergenic not near genes chr2R_6_20025001 chr2R_20025001 RAL-461 928 chr2R 20069234 20069253 chr2R 20071892 20071910 opus 5 2658 0.5 2.0 1.2 2.3 2676 chr2R 20069234 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071910 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-461 929 chr2R 20087982 20088027 chr2R 20088106 20088155 1360 8 124 1.5 5.5 3.5 1.8 173 chr2R 20087982 intergenic not near genes chr2R 20088068 intergenic not near genes chr2R 20088155 intergenic not near genes chr2R_8_20085001 chr2R_20085001 RAL-461 930 chr2R 20125724 20125748 chr2R 20125820 20125844 7 96 5.0 9.5 7.2 0.9 120 chr2R 20125724 intergenic not near genes chr2R 20125784 intergenic not near genes chr2R 20125844 intergenic not near genes chr2R_7_20125001 chr2R_20125001 RAL-461 931 chr2R 20162671 20162704 chr2R 20162808 20162839 7 135 5.5 3.5 4.5 1.3 168 chr2R 20162671 intergenic not near genes chr2R 20162755 intergenic not near genes chr2R 20162839 intergenic not near genes chr2R_7_20160001 chr2R_20160001 RAL-461 932 chr2R 20326741 20326787 chr2R 20326838 20326872 9 94 3.5 3.0 3.2 2.1 131 chr2R 20326741 5` UTR MED8 - chr2R 20326806 5` UTR MED8 - chr2R 20326872 intergenic MED8 -,CG8929 + chr2R_9_20325001 chr2R_20325001 RAL-461 933 chr2R 20490540 20490559 chr2R 20490621 20490632 5 90 3.5 5.5 4.5 0.9 92 chr2R 20490540 intergenic CR44643 - chr2R 20490586 intergenic CR44643 - chr2R 20490632 intergenic CR44643 - chr2R_5_20490001 chr2R_20490001 RAL-461 934 chr2R 20508169 20508203 chr2R 20508261 20508301 4 96 2.0 4.0 3.0 1.0 132 chr2R 20508169 intergenic CR44646 + chr2R 20508235 intergenic CR44646 + chr2R 20508301 intergenic CR44646 + chr2R_4_20505001 chr2R_20505001 RAL-461 935 chr2R 20523055 20523071 chr2R 20523151 20523189 5 117 2.0 1.0 1.5 2.0 134 chr2R 20523055 intergenic not near genes chr2R 20523122 intergenic not near genes chr2R 20523189 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-461 936 chr2R 20555336 20555342 chr2R 20555446 20555452 5 110 0.0 3.5 1.8 1.8 116 chr2R 20555336 intergenic not near genes chr2R 20555394 intergenic not near genes chr2R 20555452 intergenic not near genes chr2R_5_20555001 chr2R_20555001 RAL-461 937 chr2R 20601736 20601746 chr2R 20601817 20601850 10 98 2.0 4.0 3.0 2.5 114 chr2R 20601736 intron bl + chr2R 20601793 intron bl + chr2R 20601850 intron bl + chr2R_10_20600001 chr2R_20600001 RAL-461 938 chr2R 20698082 20698131 chr2R 20698218 20698267 12 136 3.0 2.5 2.8 3.2 185 chr2R 20698082 intergenic dpr + chr2R 20698174 intergenic dpr + chr2R 20698267 intergenic dpr + chr2R_12_20695001 chr2R_20695001 RAL-461 939 chr2R 20739421 20739459 chr2R 20744209 20744219 F-element 6 4783 3.0 2.0 2.5 1.7 4798 chr2R 20739421 intron dpr + chr2R 20741820 intron dpr + chr2R 20744219 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-461 940 chr2R 20783304 20783328 chr2R 20788083 20788120 F-element 8 4784 2.5 4.0 3.2 1.9 4816 chr2R 20783304 intergenic not near genes chr2R 20785712 intergenic not near genes chr2R 20788120 intergenic CG43666 - chr2R_8_20785001 chr2R_20785001 RAL-461 941 chr2R 20842900 20842925 chr2R 20842987 20843018 12 98 2.0 6.5 4.2 2.3 118 chr2R 20842900 intergenic not near genes chr2R 20842959 intergenic not near genes chr2R 20843018 intergenic not near genes chr2R_12_20840001 chr2R_20840001 RAL-461 942 chr2R 20861523 20861563 chr2R 20861833 20861868 13 305 0.0 9.0 4.5 2.4 345 chr2R 20861523 intergenic not near genes chr2R 20861696 intergenic not near genes chr2R 20861868 intergenic not near genes chr2R_13_20860001 chr2R_20860001 RAL-461 943 chr2R 20967015 20967053 chr2R 20967111 20967150 7 97 3.5 0.5 2.0 2.3 135 chr2R 20967015 intergenic not near genes chr2R 20967082 intergenic not near genes chr2R 20967150 intergenic not near genes chr2R_7_20965001 chr2R_20965001 RAL-461 944 chr2R 21151131 21151145 chr2R 21153762 21153798 opus 4 2641 0.0 4.0 2.0 1.3 2667 chr2R 21151131 intron CG30389 - chr2R 21152464 intron CG30389 - chr2R 21153798 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-461 945 chr2R 21247690 21247704 chr2R 21247793 21247807 4 103 8.5 1.5 5.0 0.7 117 chr2R 21247690 intron ASPP - chr2R 21247748 intron ASPP - chr2R 21247807 intron ASPP - chr2R_4_21245001 chr2R_21245001 RAL-461 946 chr2R 21363122 21363184 chr2R 21363236 21363283 7 109 0.0 0.0 0.0 7.0 161 chr2R 21363122 intron cv-2 - chr2R 21363202 intron cv-2 - chr2R 21363283 intron cv-2 - chr2R_7_21360001 chr2R_21360001 RAL-461 947 chr2R 21417262 21417282 chr2R 21417378 21417393 7 115 8.5 0.5 4.5 1.3 131 chr2R 21417262 intron Sdc - chr2R 21417328 intron Sdc - chr2R 21417393 intron Sdc - chr2R_7_21415001 chr2R_21415001 RAL-461 948 chr2R 21421319 21421351 chr2R 21421418 21421432 9 95 8.0 8.5 8.2 1.0 113 chr2R 21421319 intron Sdc - chr2R 21421376 intron Sdc - chr2R 21421432 intron Sdc - chr2R_9_21420001 chr2R_21420001 RAL-461 949 chr2R 21491274 21491300 chr2R 21491372 21491398 4 98 0.5 7.5 4.0 0.8 124 chr2R 21491274 intron Fkbp14 - chr2R 21491336 intron Fkbp14 - chr2R 21491398 intron Fkbp14 - chr2R_4_21490001 chr2R_21490001 RAL-461 950 chr2R 21540667 21540685 chr2R 21540905 21540923 11 235 1.0 1.0 1.0 5.5 256 chr2R 21540667 intron Egfr + chr2R 21540795 intron Egfr + chr2R 21540923 intron Egfr + chr2R_11_21540001 chr2R_21540001 RAL-461 951 chr2R 21753063 21753109 chr2R 21753567 21753579 roo 13 499 5.0 2.0 3.5 2.9 516 chr2R 21753063 intergenic not near genes chr2R 21753321 intergenic not near genes chr2R 21753579 intergenic not near genes chr2R_13_21750001 chr2R_21750001 RAL-461 952 chr2R 21809505 21809509 chr2R 21817765 21817769 roo 5 8260 10.0 1.5 5.8 0.7 8264 chr2R 21809505 intergenic not near genes chr2R 21813637 intergenic not near genes chr2R 21817769 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-461 953 chr2R 21809512 21809551 chr2R 21817762 21817771 roo 11 8255 6.0 1.0 3.5 2.4 8259 chr2R 21809512 intergenic not near genes chr2R 21813642 intergenic not near genes chr2R 21817771 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-461 954 chr2R 21857326 21857371 chr2R 21857437 21857480 7 109 6.0 3.0 4.5 1.3 154 chr2R 21857326 intergenic not near genes chr2R 21857403 intergenic not near genes chr2R 21857480 intergenic not near genes chr2R_7_21855001 chr2R_21855001 RAL-461 955 chr2R 21870939 21870971 chr2R 21871038 21871070 9 99 3.5 0.5 2.0 3.0 131 chr2R 21870939 intergenic not near genes chr2R 21871004 intergenic not near genes chr2R 21871070 intergenic not near genes chr2R_9_21870001 chr2R_21870001 RAL-461 956 chr2R 21906257 21906274 chr2R 21906378 21906395 8 120 6.0 1.0 3.5 1.8 138 chr2R 21906257 intron Fili + chr2R 21906326 intron Fili + chr2R 21906395 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-461 957 chr2R 21906276 21906303 chr2R 21906374 21906414 8 116 1.0 1.0 1.0 4.0 138 chr2R 21906276 intron Fili + chr2R 21906345 intron Fili + chr2R 21906414 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-461 958 chr2R 21985525 21985560 chr2R 21985626 21985661 10 98 3.0 0.5 1.8 3.6 136 chr2R 21985525 intergenic CG30401 - chr2R 21985593 intergenic CG30401 - chr2R 21985661 3` UTR CG30401 - chr2R_10_21985001 chr2R_21985001 RAL-461 959 chr2R 21992397 21992429 chr2R 21992494 21992523 5 95 3.0 5.0 4.0 1.0 126 chr2R 21992397 intron CG34370 - chr2R 21992460 intron CG34370 - chr2R 21992523 intron CG34370 - chr2R_5_21990001 chr2R_21990001 RAL-461 960 chr2R 22029506 22029532 chr2R 22029604 22029623 4 96 3.5 4.0 3.8 0.8 117 chr2R 22029506 intron CG34370 - chr2R 22029564 intron CG34370 - chr2R 22029623 intron CG34370 - chr2R_4_22025001 chr2R_22025001 RAL-461 961 chr2R 22072683 22072709 chr2R 22072778 22072808 7 102 4.5 2.0 3.2 1.7 125 chr2R 22072683 intron CG11474 - chr2R 22072746 intron CG11474 - chr2R 22072808 exon CG11474 - chr2R_7_22070001 chr2R_22070001 RAL-461 962 chr2R 22120775 22120784 chr2R 22121026 22121035 6 251 2.0 1.5 1.8 2.1 260 chr2R 22120775 intron Vrp1 - chr2R 22120905 intron Vrp1 - chr2R 22121035 intron Vrp1 - chr2R_6_22120001 chr2R_22120001 RAL-461 963 chr2R 22124298 22124338 chr2R 22124407 22124447 8 108 2.0 7.0 4.5 1.5 149 chr2R 22124298 3` UTR mei-S332 + chr2R 22124372 intergenic mei-S332 +,GM130 - chr2R 22124447 intergenic mei-S332 +,GM130 - chr2R_8_22120001 chr2R_22120001 RAL-461 964 chr2R 22132273 22132281 chr2R 22132373 22132381 4 100 4.5 4.5 4.5 0.7 108 chr2R 22132273 intergenic not near genes chr2R 22132327 intergenic not near genes chr2R 22132381 intergenic not near genes chr2R_4_22130001 chr2R_22130001 RAL-461 965 chr2R 22152002 22152011 chr2R 22152638 22152647 5 636 5.0 3.0 4.0 1.0 645 chr2R 22152002 intron a + chr2R 22152324 intron a + chr2R 22152647 intron a + chr2R_5_22150001 chr2R_22150001 RAL-461 966 chr2R 22179218 22179233 chr2R 22179305 22179330 6 95 0.5 6.0 3.2 1.4 112 chr2R 22179218 intron CG11170 - chr2R 22179274 intron CG11170 - chr2R 22179330 intron CG11170 - chr2R_6_22175001 chr2R_22175001 RAL-461 967 chr2R 22185671 22185686 chr2R 22185790 22185805 8 119 1.5 2.0 1.8 2.9 134 chr2R 22185671 3` UTR MED16 + chr2R 22185738 3` UTR MED16 + chr2R 22185805 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-461 968 chr2R 22189458 22189476 chr2R 22189585 22189620 9 141 3.5 2.5 3.0 2.2 162 chr2R 22189458 3` UTR Vps35 + chr2R 22189539 3` UTR Vps35 + chr2R 22189620 3` UTR Vps35 + chr2R_9_22185001 chr2R_22185001 RAL-461 969 chr2R 22218635 22218667 chr2R 22220541 22220591 12 1914 27.5 40.0 33.8 0.3 1956 chr2R 22218635 exon Oatp58Da - chr2R 22219613 exon Oatp58Da - chr2R 22220591 exon Oatp58Da - chr2R_12_22215001 chr2R_22215001 RAL-461 970 chr2R 22349673 22349723 chr2R 22351477 22351514 jockey 6 1801 3.0 3.5 3.2 1.4 1841 chr2R 22349673 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351514 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-461 971 chr2R 22380344 22380386 chr2R 22380455 22380494 7 110 2.5 0.0 1.2 3.2 150 chr2R 22380344 intron wrapper + chr2R 22380419 intron wrapper + chr2R 22380494 intron wrapper + chr2R_7_22380001 chr2R_22380001 RAL-461 972 chr2R 22646449 22646462 chr2R 22646561 22646574 5 112 6.5 0.0 3.2 1.2 125 chr2R 22646449 intergenic CG2852 -,CG30195 - chr2R 22646512 intergenic CG30195 -,CG2852 - chr2R 22646574 intergenic CG30195 -,CG2852 - chr2R_5_22645001 chr2R_22645001 RAL-461 973 chr2R 22774947 22774990 chr2R 22775386 22775429 jockey 12 438 6.0 5.0 5.5 1.8 482 chr2R 22774947 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775429 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-461 974 chr2R 22781287 22781336 chr2R 22781401 22781441 12 109 3.5 3.5 3.5 2.7 154 chr2R 22781287 intron CG42260 - chr2R 22781364 intron CG42260 - chr2R 22781441 intron CG42260 - chr2R_12_22780001 chr2R_22780001 RAL-461 975 chr2R 22941807 22941852 chr2R 22941906 22941914 14 94 0.0 7.0 3.5 3.1 107 chr2R 22941807 intergenic CG42694 + chr2R 22941860 intergenic CG42694 + chr2R 22941914 5` UTR CG42694 + chr2R_14_22940001 chr2R_22940001 RAL-461 976 chr2R 22953370 22953382 chr2R 22953484 22953486 4 112 4.0 0.0 2.0 1.3 116 chr2R 22953370 intron CR32835 - chr2R 22953428 3` UTR CR32835 - chr2R 22953486 3` UTR CR32835 - chr2R_4_22950001 chr2R_22950001 RAL-461 977 chr2R 22993415 22993448 chr2R 22993599 22993618 7 178 1.5 3.5 2.5 2.0 203 chr2R 22993415 intron twi + chr2R 22993516 intron twi + chr2R 22993618 intron twi + chr2R_7_22990001 chr2R_22990001 RAL-461 978 chr2R 23052641 23052689 chr2R 23052726 23052775 11 91 2.5 3.5 3.0 2.8 134 chr2R 23052641 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052775 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-461 979 chr2R 23224159 23224207 chr2R 23224259 23224301 5 101 1.0 3.0 2.0 1.7 142 chr2R 23224159 intergenic not near genes chr2R 23224230 intergenic not near genes chr2R 23224301 intergenic not near genes chr2R_5_23220001 chr2R_23220001 RAL-461 980 chr2R 23291309 23291333 chr2R 23291407 23291410 6 94 2.5 2.5 2.5 1.7 101 chr2R 23291309 3` UTR CR44783 - chr2R 23291360 3` UTR CR44783 - chr2R 23291410 intergenic CR44783 - chr2R_6_23290001 chr2R_23290001 RAL-461 981 chr2R 23356266 23356308 chr2R 23356365 23356417 16 99 6.0 3.0 4.5 2.9 151 chr2R 23356266 3` UTR Rpi + chr2R 23356342 3` UTR Rpi + chr2R 23356417 3` UTR,3` UTR Rpi +,CG3500 - chr2R_16_23355001 chr2R_23355001 RAL-461 982 chr2R 23421372 23421391 chr2R 23421452 23421490 6 97 2.0 5.0 3.5 1.3 118 chr2R 23421372 intergenic CG9815 - chr2R 23421431 intergenic CG9815 - chr2R 23421490 intergenic CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-461 983 chr2R 23433022 23433047 chr2R 23433120 23433134 4 95 1.5 5.0 3.2 1.0 112 chr2R 23433022 intron CG9815 - chr2R 23433078 intron CG9815 - chr2R 23433134 intron CG9815 - chr2R_4_23430001 chr2R_23430001 RAL-461 984 chr2R 23508904 23508936 chr2R 23509041 23509073 9 135 3.5 4.0 3.8 1.9 169 chr2R 23508904 intergenic not near genes chr2R 23508988 intergenic not near genes chr2R 23509073 intergenic not near genes chr2R_9_23505001 chr2R_23505001 RAL-461 985 chr2R 23563876 23563920 chr2R 23563976 23564020 8 97 4.5 3.5 4.0 1.6 144 chr2R 23563876 3` UTR Pi3K59F + chr2R 23563948 3` UTR Pi3K59F + chr2R 23564020 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_8_23560001 chr2R_23560001 RAL-461 986 chr2R 23607019 23607025 chr2R 23607120 23607126 4 101 6.5 4.0 5.2 0.6 107 chr2R 23607019 intron CG17664 - chr2R 23607072 intron CG17664 - chr2R 23607126 intron CG17664 - chr2R_4_23605001 chr2R_23605001 RAL-461 987 chr2R 23607026 23607046 chr2R 23607119 23607147 7 98 4.0 4.0 4.0 1.4 121 chr2R 23607026 intron CG17664 - chr2R 23607086 intron CG17664 - chr2R 23607147 intron CG17664 - chr2R_7_23605001 chr2R_23605001 RAL-461 988 chr2R 23607049 23607192 chr2R 23607118 23607304 14 109 3.5 4.0 3.8 2.9 255 chr2R 23607049 intron CG17664 - chr2R 23607176 intron CG17664 - chr2R 23607304 intron CG17664 - chr2R_14_23605001 chr2R_23605001 RAL-461 989 chr2R 23635692 23635710 chr2R 23635773 23635806 5 93 4.0 0.0 2.0 1.7 114 chr2R 23635692 intron retn + chr2R 23635749 intron retn + chr2R 23635806 intron retn + chr2R_5_23635001 chr2R_23635001 RAL-461 990 chr2R 23663374 23663405 chr2R 23663450 23663496 12 89 5.5 6.0 5.8 1.8 122 chr2R 23663374 intron Pde8 + chr2R 23663435 intron Pde8 + chr2R 23663496 intron Pde8 + chr2R_12_23660001 chr2R_23660001 RAL-461 991 chr2R 23784459 23784472 chr2R 23784557 23784570 4 96 10.0 5.5 7.8 0.5 111 chr2R 23784459 intron CG9850 - chr2R 23784514 intron CG9850 - chr2R 23784570 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-461 992 chr2R 23784484 23784504 chr2R 23784555 23784602 6 92 5.5 5.5 5.5 0.9 118 chr2R 23784484 intron CG9850 - chr2R 23784543 intron CG9850 - chr2R 23784602 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-461 993 chr2R 23914293 23914328 chr2R 23921937 23921972 412 5 7631 2.5 2.0 2.2 1.6 7679 chr2R 23914293 exon kcc + chr2R 23918132 intron kcc + chr2R 23921972 exon kcc + chr2R_5_23915001 chr2R_23915001 RAL-461 994 chr2R 24031361 24031404 chr2R 24031465 24031468 22 96 9.5 7.5 8.5 2.3 107 chr2R 24031361 5` UTR CG30172 - chr2R 24031414 5` UTR CG30172 - chr2R 24031468 intergenic CG30172 -,Chi - chr2R_22_24030001 chr2R_24030001 RAL-461 995 chr2R 24045859 24045905 chr2R 24045957 24046009 14 96 4.0 4.5 4.2 2.7 150 chr2R 24045859 intron tsr - chr2R 24045934 intron tsr - chr2R 24046009 intron tsr - chr2R_14_24045001 chr2R_24045001 RAL-461 996 chr2R 24141127 24141132 chr2R 24141225 24141228 4 98 6.5 5.0 5.8 0.6 101 chr2R 24141127 intron Dat + chr2R 24141178 intron Dat + chr2R 24141228 intron Dat + chr2R_4_24140001 chr2R_24140001 RAL-461 997 chr2R 24141150 24141174 chr2R 24141223 24141267 7 92 2.0 4.5 3.2 1.7 117 chr2R 24141150 intron Dat + chr2R 24141208 intron Dat + chr2R 24141267 intron Dat + chr2R_7_24140001 chr2R_24140001 RAL-461 998 chr2R 24177214 24177264 chr2R 24184719 24184730 412 21 7499 6.5 7.0 6.8 2.7 7516 chr2R 24177214 3` UTR Nop60B + chr2R 24180972 intron Nop60B + chr2R 24184730 3` UTR Nop60B + chr2R_21_24180001 chr2R_24180001 RAL-461 999 chr2R 24278302 24278356 chr2R 24278406 24278454 7 102 1.0 2.0 1.5 2.8 152 chr2R 24278302 intron nvy + chr2R 24278378 intron nvy + chr2R 24278454 intron nvy + chr2R_7_24275001 chr2R_24275001 RAL-461 1000 chr2R 24291933 24291980 chr2R 24292084 24292133 9 152 2.5 3.0 2.8 2.4 200 chr2R 24291933 intergenic not near genes chr2R 24292033 intergenic not near genes chr2R 24292133 intergenic not near genes chr2R_9_24290001 chr2R_24290001 RAL-461 1001 chr2R 24353415 24353443 chr2R 24361797 24361825 roo 9 8377 3.0 3.5 3.2 2.1 8410 chr2R 24353415 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361825 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-461 1002 chr2R 24430936 24430947 chr2R 24431004 24431055 4 97 0.0 2.0 1.0 2.0 119 chr2R 24430936 intergenic CG15873 -,Pgam5-2 - chr2R 24430996 intergenic CG15873 -,Pgam5-2 - chr2R 24431055 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-461 1003 chr2R 24493071 24493084 chr2R 24493179 24493193 4 108 5.5 5.5 5.5 0.6 122 chr2R 24493071 intergenic CG13590 -,CG13589 - chr2R 24493132 intergenic CG13590 -,CG13589 - chr2R 24493193 intergenic CG13590 -,CG13589 - chr2R_4_24490001 chr2R_24490001 RAL-461 1004 chr2R 24629277 24629287 chr2R 24629678 24629684 6 418 1.0 0.5 0.8 3.3 407 chr2R 24629277 intron CG13594 - chr2R 24629480 intron CG13594 - chr2R 24629684 intron CG13594 - chr2R_6_24625001 chr2R_24625001 RAL-461 1005 chr2R 24636887 24636916 chr2R 24636992 24637017 14 104 3.0 0.0 1.5 5.6 130 chr2R 24636887 intron CG13594 - chr2R 24636952 intron CG13594 - chr2R 24637017 intron CG13594 - chr2R_14_24635001 chr2R_24635001 RAL-461 1006 chr2R 24647602 24647615 chr2R 24655158 24655192 412 4 7570 4.5 3.0 3.8 0.8 7590 chr2R 24647602 intergenic not near genes chr2R 24651397 intergenic not near genes chr2R 24655192 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-461 1007 chr2R 24722344 24722397 chr2R 24722446 24722499 23 100 4.5 2.0 3.2 5.5 155 chr2R 24722344 intron Mid1 - chr2R 24722422 intron Mid1 - chr2R 24722499 intron Mid1 - chr2R_23_24720001 chr2R_24720001 RAL-461 1008 chr2R 24763610 24763627 chr2R 24765599 24765623 G2 4 1988 0.5 3.0 1.8 1.4 2013 chr2R 24763610 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765623 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-461 1009 chr2R 24884033 24884079 chr2R 24884135 24884176 20 98 3.0 4.5 3.8 4.2 143 chr2R 24884033 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884176 intron NKAIN + chr2R_20_24880001 chr2R_24880001 RAL-461 1010 chr2R 24927842 24927876 chr2R 24927932 24927979 8 99 4.5 6.0 5.2 1.3 137 chr2R 24927842 intron pain - chr2R 24927910 intron pain - chr2R 24927979 intron pain - chr2R_8_24925001 chr2R_24925001 RAL-461 1011 chr2R 25022623 25022671 chr2R 25022727 25022735 18 98 3.5 7.0 5.2 2.9 112 chr2R 25022623 intron uzip + chr2R 25022679 intron uzip + chr2R 25022735 intron uzip + chr2R_18_25020001 chr2R_25020001 RAL-461 1012 chr2R 25097863 25097882 chr2R 25097966 25098000 4 114 1.5 7.5 4.5 0.7 137 chr2R 25097863 intron lov - chr2R 25097932 intron lov - chr2R 25098000 intron lov - chr2R_4_25095001 chr2R_25095001 RAL-461 1013 chr2R 25141646 25141681 chr2R 25159339 25159381 roo 18 17702 7.0 6.0 6.5 2.4 17735 chr2R 25141646 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159381 intergenic not near genes chr2R_18_25150001 chr2R_25150001 RAL-461 1014 chr2R 25193321 25193370 chr2R 25193483 25193533 6 156 2.5 3.0 2.8 1.6 212 chr2R 25193321 intron CG9380 - chr2R 25193427 intron CG9380 - chr2R 25193533 intron CG9380 - chr2R_6_25190001 chr2R_25190001 RAL-461 1015 chr2R 25234744 25234799 chr2R 25234844 25234888 22 97 3.0 2.5 2.8 5.8 144 chr2R 25234744 intron CG9380 - chr2R 25234816 intron CG9380 - chr2R 25234888 intron CG9380 - chr2R_22_25230001 chr2R_25230001 RAL-461 1016 chr3L 110199 110238 chr3L 119376 119399 roo 14 9179 5.5 6.5 6.0 2.0 9200 chr3L 110199 intergenic not near genes chr3L 114799 intergenic not near genes chr3L 119399 intergenic not near genes chr3L_14_110001 chr3L_110001 RAL-461 1017 chr3L 283071 283102 chr3L 283432 283473 5 357 1.0 3.0 2.0 1.7 402 chr3L 283071 intron RhoGEF3 + chr3L 283272 intron RhoGEF3 + chr3L 283473 intron RhoGEF3 + chr3L_5_280001 chr3L_280001 RAL-461 1018 chr3L 283103 283105 chr3L 283425 283446 4 346 1.0 2.5 1.8 1.4 343 chr3L 283103 intron RhoGEF3 + chr3L 283274 intron RhoGEF3 + chr3L 283446 intron RhoGEF3 + chr3L_4_280001 chr3L_280001 RAL-461 1019 chr3L 402686 402714 chr3L 409742 409781 297 13 7066 1.5 4.5 3.0 3.2 7095 chr3L 402686 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409781 intergenic not near genes chr3L_13_405001 chr3L_405001 RAL-461 1020 chr3L 477877 477899 chr3L 477980 478002 5 103 2.0 0.0 1.0 2.5 125 chr3L 477877 intron klar - chr3L 477940 intron klar - chr3L 478002 intron klar - chr3L_5_475001 chr3L_475001 RAL-461 1021 chr3L 514263 514304 chr3L 514360 514401 12 96 3.0 6.0 4.5 2.2 138 chr3L 514263 intron klar - chr3L 514332 intron klar - chr3L 514401 intron klar - chr3L_12_510001 chr3L_510001 RAL-461 1022 chr3L 559508 559544 chr3L 559917 559928 4 403 3.5 4.0 3.8 0.8 420 chr3L 559508 intron hipk + chr3L 559718 intron hipk + chr3L 559928 intron hipk + chr3L_4_555001 chr3L_555001 RAL-461 1023 chr3L 592959 592966 chr3L 593055 593062 5 96 3.0 5.5 4.2 1.0 103 chr3L 592959 intergenic MED14 + chr3L 593010 intergenic MED14 + chr3L 593062 intergenic MED14 + chr3L_5_590001 chr3L_590001 RAL-461 1024 chr3L 634717 634762 chr3L 634845 634845 5 117 5.0 3.5 4.2 1.0 128 chr3L 634717 5` UTR CR43334 + chr3L 634781 5` UTR CR43334 + chr3L 634845 5` UTR CR43334 + chr3L_5_630001 chr3L_630001 RAL-461 1025 chr3L 642458 642495 chr3L 642569 642594 6 108 3.5 7.0 5.2 1.0 136 chr3L 642458 5` UTR CR43334 + chr3L 642526 5` UTR CR43334 + chr3L 642594 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-461 1026 chr3L 651369 651417 chr3L 651477 651525 20 101 2.5 5.5 4.0 4.0 156 chr3L 651369 intergenic Gale +,CG3402 - chr3L 651447 intergenic CG3402 -,Gale + chr3L 651525 intergenic CG3402 -,Gale + chr3L_20_650001 chr3L_650001 RAL-461 1027 chr3L 705880 705930 chr3L 706000 706050 13 116 6.5 3.0 4.8 2.2 170 chr3L 705880 intergenic CG13895 -,CR44514 + chr3L 705965 3` UTR CG13895 - chr3L 706050 3` UTR CG13895 - chr3L_13_705001 chr3L_705001 RAL-461 1028 chr3L 717904 717913 chr3L 717978 718022 4 92 0.5 2.5 1.5 1.6 118 chr3L 717904 intergenic not near genes chr3L 717963 intergenic not near genes chr3L 718022 intergenic not near genes chr3L_4_715001 chr3L_715001 RAL-461 1029 chr3L 789900 789927 chr3L 790398 790398 roo 5 493 3.0 3.5 3.2 1.2 498 chr3L 789900 intergenic not near genes chr3L 790149 intergenic not near genes chr3L 790398 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-461 1030 chr3L 802566 802566 chr3L 11777678 11777678 4 10975112 8.0 5.0 6.5 0.5 10975112 chr3L 802566 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-461 1031 chr3L 821062 821081 chr3L 821158 821179 7 98 4.0 4.0 4.0 1.4 117 chr3L 821062 5` UTR CR43883 + chr3L 821120 5` UTR CR43883 + chr3L 821179 5` UTR CR43883 + chr3L_7_820001 chr3L_820001 RAL-461 1032 chr3L 875643 875690 chr3L 875744 875747 10 94 5.0 3.0 4.0 2.0 104 chr3L 875643 intron CG32479 + chr3L 875695 intron CG32479 + chr3L 875747 intron CG32479 + chr3L_10_875001 chr3L_875001 RAL-461 1033 chr3L 884010 884041 chr3L 884171 884210 8 158 3.5 3.5 3.5 1.8 200 chr3L 884010 intron CG32479 + chr3L 884110 intron CG32479 + chr3L 884210 intron CG32479 + chr3L_8_880001 chr3L_880001 RAL-461 1034 chr3L 899998 900018 chr3L 900102 900122 7 104 0.0 7.0 3.5 1.6 124 chr3L 899998 intergenic not near genes chr3L 900060 intergenic not near genes chr3L 900122 intergenic not near genes chr3L_7_900001 chr3L_900001 RAL-461 1035 chr3L 925178 925183 chr3L 932623 932629 mdg1 4 7444 5.5 2.5 4.0 0.8 7451 chr3L 925178 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932629 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-461 1036 chr3L 925184 925209 chr3L 932600 932655 mdg1 14 7439 4.5 1.0 2.8 3.7 7471 chr3L 925184 intron Glut1 + chr3L 928920 intron Glut1 + chr3L 932655 intron Glut1 + chr3L_14_925001 chr3L_925001 RAL-461 1037 chr3L 933904 933943 chr3L 934016 934055 13 117 2.0 3.0 2.5 3.7 151 chr3L 933904 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934055 intron Glut1 + chr3L_13_930001 chr3L_930001 RAL-461 1038 chr3L 939760 939799 chr3L 940901 940929 jockey 8 1140 1.5 9.0 5.2 1.3 1169 chr3L 939760 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940929 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-461 1039 chr3L 1003046 1003080 chr3L 1003133 1003177 17 95 3.0 6.0 4.5 3.1 131 chr3L 1003046 intron trio - chr3L 1003112 intron trio - chr3L 1003177 intron trio - chr3L_17_1000001 chr3L_1000001 RAL-461 1040 chr3L 1040532 1040581 chr3L 1040636 1040655 11 96 0.0 2.5 1.2 5.0 123 chr3L 1040532 intron bab1 - chr3L 1040594 intron bab1 - chr3L 1040655 intron bab1 - chr3L_11_1040001 chr3L_1040001 RAL-461 1041 chr3L 1042942 1042983 chr3L 1043040 1043081 6 94 6.0 1.5 3.8 1.2 139 chr3L 1042942 intron bab1 - chr3L 1043012 intron bab1 - chr3L 1043081 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-461 1042 chr3L 1109612 1109659 chr3L 1109720 1109767 14 105 4.0 3.0 3.5 3.1 155 chr3L 1109612 intergenic not near genes chr3L 1109690 intergenic not near genes chr3L 1109767 intergenic not near genes chr3L_14_1105001 chr3L_1105001 RAL-461 1043 chr3L 1154128 1154162 chr3L 1163288 1163327 roo 9 9160 2.0 1.0 1.5 3.6 9199 chr3L 1154128 intron bab2 - chr3L 1158728 intron bab2 - chr3L 1163327 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-461 1044 chr3L 1194524 1194547 chr3L 1194639 1194662 5 115 6.5 12.5 9.5 0.5 138 chr3L 1194524 intergenic LysX - chr3L 1194593 intergenic LysX - chr3L 1194662 intergenic LysX - chr3L_5_1190001 chr3L_1190001 RAL-461 1045 chr3L 1219595 1219613 chr3L 1227332 1227366 412 6 7740 3.5 1.0 2.2 1.9 7771 chr3L 1219595 intron mwh + chr3L 1223480 intron mwh + chr3L 1227366 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-461 1046 chr3L 1257622 1257651 chr3L 1257720 1257751 5 100 0.0 8.0 4.0 1.0 129 chr3L 1257622 intron CG9134 + chr3L 1257686 intron CG9134 + chr3L 1257751 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-461 1047 chr3L 1310982 1310995 chr3L 1315837 1315872 6 4856 10.5 16.5 13.5 0.4 4890 chr3L 1310982 exon CG2469 + chr3L 1313427 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-461 1048 chr3L 1361290 1361324 chr3L 1361365 1361372 6 73 2.0 1.0 1.5 2.4 82 chr3L 1361290 intron Ptp61F - chr3L 1361331 intron Ptp61F - chr3L 1361372 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-461 1049 chr3L 1374415 1374442 chr3L 1374512 1374523 8 86 7.5 3.0 5.2 1.3 108 chr3L 1374415 intron,intron Ptp61F -,ru + chr3L 1374469 intron,intron Ptp61F -,ru + chr3L 1374523 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-461 1050 chr3L 1396730 1396752 chr3L 1396826 1396856 5 102 31.5 30.5 31.0 0.2 126 chr3L 1396730 intron Ptp61F - chr3L 1396793 intron Ptp61F - chr3L 1396856 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-461 1051 chr3L 1585914 1585938 chr3L 1586015 1586039 4 101 2.0 3.0 2.5 1.1 125 chr3L 1585914 intron CG13917 + chr3L 1585976 intron CG13917 + chr3L 1586039 intron CG13917 + chr3L_4_1585001 chr3L_1585001 RAL-461 1052 chr3L 1639210 1639230 chr3L 1639411 1639431 7 198 2.5 7.0 4.8 1.2 221 chr3L 1639210 5` UTR metl - chr3L 1639320 intergenic metl -,Bgb + chr3L 1639431 intergenic metl -,Bgb + chr3L_7_1635001 chr3L_1635001 RAL-461 1053 chr3L 1740847 1740877 chr3L 1741095 1741108 pogo 4 246 4.5 3.5 4.0 0.8 261 chr3L 1740847 intron Gk + chr3L 1740978 intron Gk + chr3L 1741108 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-461 1054 chr3L 1901526 1901568 chr3L 1901612 1901656 8 79 2.0 1.5 1.8 2.9 130 chr3L 1901526 intron CG1887 - chr3L 1901591 intron CG1887 - chr3L 1901656 intron CG1887 - chr3L_8_1900001 chr3L_1900001 RAL-461 1055 chr3L 1959025 1959058 chr3L 1959125 1959158 9 97 6.0 3.0 4.5 1.6 133 chr3L 1959025 intron mv - chr3L 1959092 intron mv - chr3L 1959158 intron mv - chr3L_9_1955001 chr3L_1955001 RAL-461 1056 chr3L 2016825 2016867 chr3L 2016921 2016952 13 100 4.5 7.5 6.0 1.9 127 chr3L 2016825 intergenic not near genes chr3L 2016888 intergenic not near genes chr3L 2016952 intergenic not near genes chr3L_13_2015001 chr3L_2015001 RAL-461 1057 chr3L 2108240 2108259 chr3L 2113464 2113478 copia 8 5223 3.5 10.0 6.8 1.0 5238 chr3L 2108240 intron sls - chr3L 2110859 intron sls - chr3L 2113478 intron sls - chr3L_8_2110001 chr3L_2110001 RAL-461 1058 chr3L 2108261 2108284 chr3L 2113460 2113502 copia 6 5214 3.0 9.5 6.2 0.8 5241 chr3L 2108261 intron sls - chr3L 2110882 intron sls - chr3L 2113502 intron sls - chr3L_6_2110001 chr3L_2110001 RAL-461 1059 chr3L 2113779 2113793 chr3L 2113876 2113890 4 97 2.5 7.0 4.8 0.7 111 chr3L 2113779 intron sls - chr3L 2113834 intron sls - chr3L 2113890 intron sls - chr3L_4_2110001 chr3L_2110001 RAL-461 1060 chr3L 2139196 2139226 chr3L 2139286 2139307 10 93 5.5 0.5 3.0 2.5 111 chr3L 2139196 intron zormin - chr3L 2139252 intron zormin - chr3L 2139307 intron zormin - chr3L_10_2135001 chr3L_2135001 RAL-461 1061 chr3L 2157988 2158007 chr3L 2158116 2158129 7 126 9.0 3.0 6.0 1.0 141 chr3L 2157988 intron CG15822 - chr3L 2158058 intron CG15822 - chr3L 2158129 intron CG15822 - chr3L_7_2155001 chr3L_2155001 RAL-461 1062 chr3L 2166830 2166854 chr3L 2166934 2166959 5 104 5.5 5.0 5.2 0.8 129 chr3L 2166830 intergenic not near genes chr3L 2166894 intergenic not near genes chr3L 2166959 intergenic not near genes chr3L_5_2165001 chr3L_2165001 RAL-461 1063 chr3L 2175349 2175387 chr3L 2175473 2175499 8 115 5.5 3.5 4.5 1.5 150 chr3L 2175349 intergenic not near genes chr3L 2175424 intergenic not near genes chr3L 2175499 intergenic not near genes chr3L_8_2175001 chr3L_2175001 RAL-461 1064 chr3L 2199797 2199817 chr3L 2199893 2199913 5 94 2.5 5.0 3.8 1.0 116 chr3L 2199797 intergenic not near genes chr3L 2199855 intergenic not near genes chr3L 2199913 intergenic not near genes chr3L_5_2195001 chr3L_2195001 RAL-461 1065 chr3L 2282977 2283018 chr3L 2283066 2283109 16 94 1.5 3.5 2.5 4.6 132 chr3L 2282977 5` UTR MsR2 + chr3L 2283043 5` UTR MsR2 + chr3L 2283109 5` UTR MsR2 + chr3L_16_2280001 chr3L_2280001 RAL-461 1066 chr3L 2307988 2308034 chr3L 2308112 2308139 7 120 2.5 3.0 2.8 1.8 151 chr3L 2307988 intergenic not near genes chr3L 2308064 intergenic not near genes chr3L 2308139 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-461 1067 chr3L 2321139 2321193 chr3L 2321236 2321263 8 83 3.5 2.5 3.0 2.0 124 chr3L 2321139 intergenic not near genes chr3L 2321201 intergenic not near genes chr3L 2321263 intergenic not near genes chr3L_8_2320001 chr3L_2320001 RAL-461 1068 chr3L 2331581 2331611 chr3L 2331662 2331673 7 78 2.5 3.0 2.8 1.8 92 chr3L 2331581 intron MsR1 + chr3L 2331627 intron MsR1 + chr3L 2331673 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-461 1069 chr3L 2355668 2355687 chr3L 11521336 11521337 4 9165659 1.0 2.5 1.8 1.4 9165669 chr3L 2355668 intergenic not near genes chr3L 6938502 intergenic not near genes chr3L 11521337 3` UTR CG11714 - chr3L_4_6935001 chr3L_6935001 RAL-461 1070 chr3L 2447489 2447531 chr3L 2456665 2456707 roo 7 9166 2.5 3.5 3.0 1.8 9218 chr3L 2447489 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456707 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-461 1071 chr3L 2467431 2467483 chr3L 2467548 2467600 4 117 3.0 0.0 1.5 1.6 169 chr3L 2467431 intron CG45186 + chr3L 2467516 intron CG45186 + chr3L 2467600 intron CG45186 + chr3L_4_2465001 chr3L_2465001 RAL-461 1072 chr3L 2479473 2479482 chr3L 2479581 2479595 4 112 0.0 6.5 3.2 1.0 122 chr3L 2479473 intron CG45186 + chr3L 2479534 intron CG45186 + chr3L 2479595 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-461 1073 chr3L 2524310 2524327 chr3L 2524493 2524510 8 182 3.5 4.0 3.8 1.7 200 chr3L 2524310 intron Spn - chr3L 2524410 intron Spn - chr3L 2524510 intron Spn - chr3L_8_2520001 chr3L_2520001 RAL-461 1074 chr3L 2595563 2595613 chr3L 2595669 2595719 12 101 3.0 5.0 4.0 2.4 156 chr3L 2595563 3` UTR dos + chr3L 2595641 intergenic dos +,CG16984 +,CG12182 - chr3L 2595719 intergenic CG16984 +,CG12182 -,dos + chr3L_12_2595001 chr3L_2595001 RAL-461 1075 chr3L 2624369 2624419 chr3L 2624531 2624574 14 161 4.0 1.0 2.5 4.0 205 chr3L 2624369 intron Pxn - chr3L 2624472 intron Pxn - chr3L 2624574 intron Pxn - chr3L_14_2620001 chr3L_2620001 RAL-461 1076 chr3L 2683931 2683977 chr3L 2684027 2684073 10 91 2.5 2.5 2.5 2.9 142 chr3L 2683931 intron Fife - chr3L 2684002 intron Fife - chr3L 2684073 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-461 1077 chr3L 2719516 2719552 chr3L 2719638 2719672 7 119 3.5 3.5 3.5 1.6 156 chr3L 2719516 3` UTR Mrtf - chr3L 2719594 3` UTR Mrtf - chr3L 2719672 3` UTR Mrtf - chr3L_7_2715001 chr3L_2715001 RAL-461 1078 chr3L 2766716 2766749 chr3L 2766833 2766866 7 116 6.5 2.5 4.5 1.3 150 chr3L 2766716 intergenic Mrtf -,Non2 + chr3L 2766791 intergenic Non2 +,Mrtf - chr3L 2766866 intergenic Non2 +,Mrtf - chr3L_7_2765001 chr3L_2765001 RAL-461 1079 chr3L 2882097 2882144 chr3L 2882193 2882215 14 90 4.5 5.0 4.8 2.4 118 chr3L 2882097 intergenic not near genes chr3L 2882156 intergenic not near genes chr3L 2882215 intergenic not near genes chr3L_14_2880001 chr3L_2880001 RAL-461 1080 chr3L 2927821 2927872 chr3L 2936118 2936168 Tirant 12 8295 4.5 4.0 4.2 2.3 8347 chr3L 2927821 intron Shab + chr3L 2931994 intron Shab + chr3L 2936168 intron Shab + chr3L_12_2930001 chr3L_2930001 RAL-461 1081 chr3L 2939129 2939162 chr3L 2939218 2939258 11 89 5.0 4.0 4.5 2.0 129 chr3L 2939129 intron Shab + chr3L 2939194 intron Shab + chr3L 2939258 intron Shab + chr3L_11_2935001 chr3L_2935001 RAL-461 1082 chr3L 2975109 2975146 chr3L 2975223 2975259 6 109 2.5 2.5 2.5 1.7 150 chr3L 2975109 intergenic CR44530 - chr3L 2975184 intergenic CR44530 - chr3L 2975259 intergenic CR44530 - chr3L_6_2975001 chr3L_2975001 RAL-461 1083 chr3L 3028321 3028366 chr3L 3028420 3028441 5 83 3.5 3.0 3.2 1.2 120 chr3L 3028321 intergenic not near genes chr3L 3028381 intergenic not near genes chr3L 3028441 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-461 1084 chr3L 3051724 3051752 chr3L 3051986 3052007 pogo 9 260 8.5 1.5 5.0 1.5 283 chr3L 3051724 3` UTR CG32485 + chr3L 3051866 intergenic CG32485 + chr3L 3052007 intergenic CG32485 + chr3L_9_3050001 chr3L_3050001 RAL-461 1085 chr3L 3102812 3102842 chr3L 3102905 3102916 6 88 2.5 3.0 2.8 1.6 104 chr3L 3102812 intron Cht7 - chr3L 3102864 intron Cht7 - chr3L 3102916 intron Cht7 - chr3L_6_3100001 chr3L_3100001 RAL-461 1086 chr3L 3134303 3134353 chr3L 3134528 3134541 13 215 3.0 4.5 3.8 2.7 238 chr3L 3134303 intron CG11537 - chr3L 3134422 intron CG11537 - chr3L 3134541 intron CG11537 - chr3L_13_3130001 chr3L_3130001 RAL-461 1087 chr3L 3254067 3254113 chr3L 3254178 3254224 13 108 4.5 1.5 3.0 3.2 157 chr3L 3254067 5` UTR CR43626 + chr3L 3254146 5` UTR CR43626 + chr3L 3254224 5` UTR CR43626 + chr3L_13_3250001 chr3L_3250001 RAL-461 1088 chr3L 3257106 3257119 chr3L 3257273 3257316 5 186 2.5 6.5 4.5 0.9 210 chr3L 3257106 intergenic not near genes chr3L 3257211 intergenic not near genes chr3L 3257316 intergenic not near genes chr3L_5_3255001 chr3L_3255001 RAL-461 1089 chr3L 3281442 3281450 chr3L 3281944 3281960 Doc 4 511 5.0 5.5 5.2 0.6 518 chr3L 3281442 intron CG12017 + chr3L 3281701 intron CG12017 + chr3L 3281960 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-461 1090 chr3L 3281454 3281470 chr3L 3281931 3281986 Doc 7 493 2.0 2.5 2.2 2.2 532 chr3L 3281454 intron CG12017 + chr3L 3281720 intron CG12017 + chr3L 3281986 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-461 1091 chr3L 3310272 3310324 chr3L 3310370 3310394 9 92 1.0 1.5 1.2 4.1 122 chr3L 3310272 intron ZnT63C + chr3L 3310333 intron ZnT63C + chr3L 3310394 intron ZnT63C + chr3L_9_3310001 chr3L_3310001 RAL-461 1092 chr3L 3315980 3316001 chr3L 3316101 3316122 6 121 3.5 8.0 5.8 0.9 142 chr3L 3315980 intergenic Drsl4 + chr3L 3316051 intergenic Drsl4 + chr3L 3316122 intergenic Drsl4 + chr3L_6_3315001 chr3L_3315001 RAL-461 1093 chr3L 3317521 3317539 chr3L 3317620 3317638 6 99 1.0 7.5 4.2 1.2 117 chr3L 3317521 intergenic Drsl5 + chr3L 3317580 intergenic Drsl5 +,PIG-C - chr3L 3317638 intergenic PIG-C -,Drsl5 + chr3L_6_3315001 chr3L_3315001 RAL-461 1094 chr3L 3317544 3317560 chr3L 3317613 3317659 6 94 1.0 6.5 3.8 1.2 115 chr3L 3317544 intergenic Drsl5 +,PIG-C - chr3L 3317602 intergenic PIG-C -,Drsl5 + chr3L 3317659 intergenic PIG-C - chr3L_6_3315001 chr3L_3315001 RAL-461 1095 chr3L 3494177 3494204 chr3L 3494274 3494301 9 97 4.0 4.0 4.0 1.8 124 chr3L 3494177 intron CG42324 + chr3L 3494239 intron CG42324 + chr3L 3494301 intron CG42324 + chr3L_9_3490001 chr3L_3490001 RAL-461 1096 chr3L 3494758 3494769 chr3L 3494856 3494856 5 96 4.0 5.0 4.5 0.9 98 chr3L 3494758 intron CG42324 + chr3L 3494807 intron CG42324 + chr3L 3494856 intron CG42324 + chr3L_5_3490001 chr3L_3490001 RAL-461 1097 chr3L 3544387 3544409 chr3L 3544517 3544539 6 129 0.0 4.5 2.2 1.9 152 chr3L 3544387 intron Eip63E + chr3L 3544463 intron Eip63E + chr3L 3544539 intron Eip63E + chr3L_6_3540001 chr3L_3540001 RAL-461 1098 chr3L 3574467 3574512 chr3L 3574621 3574666 6 147 1.5 3.0 2.2 1.9 199 chr3L 3574467 intron Eip63E + chr3L 3574566 intron Eip63E + chr3L 3574666 intron Eip63E + chr3L_6_3570001 chr3L_3570001 RAL-461 1099 chr3L 3601293 3601329 chr3L 3606624 3606658 copia 9 5317 2.5 3.5 3.0 2.2 5365 chr3L 3601293 intron Eip63E + chr3L 3603976 intron Eip63E + chr3L 3606658 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-461 1100 chr3L 3627215 3627263 chr3L 3627340 3627388 14 124 2.0 3.5 2.8 3.7 173 chr3L 3627215 intron dar1 + chr3L 3627302 intron dar1 + chr3L 3627388 intron dar1 + chr3L_14_3625001 chr3L_3625001 RAL-461 1101 chr3L 3709441 3709451 chr3L 3709543 3709553 5 102 1.5 2.0 1.8 1.8 112 chr3L 3709441 intergenic CR45675 + chr3L 3709497 intergenic CR45675 + chr3L 3709553 intergenic not near genes chr3L_5_3705001 chr3L_3705001 RAL-461 1102 chr3L 3792020 3792041 chr3L 3792129 3792150 6 108 0.0 4.0 2.0 2.0 130 chr3L 3792020 intron CG32264 - chr3L 3792085 intron CG32264 - chr3L 3792150 intron CG32264 - chr3L_6_3790001 chr3L_3790001 RAL-461 1103 chr3L 3797220 3797258 chr3L 3797323 3797361 9 100 4.0 3.5 3.8 1.9 141 chr3L 3797220 intron CG32264 - chr3L 3797290 intron CG32264 - chr3L 3797361 intron CG32264 - chr3L_9_3795001 chr3L_3795001 RAL-461 1104 chr3L 3815040 3815081 chr3L 3815132 3815168 20 97 3.5 5.0 4.2 3.8 128 chr3L 3815040 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815104 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815168 intron,intron Scsalpha +,CR43932 - chr3L_20_3815001 chr3L_3815001 RAL-461 1105 chr3L 3968033 3968058 chr3L 3968131 3968157 6 99 3.0 0.5 1.8 2.1 124 chr3L 3968033 intergenic not near genes chr3L 3968095 intergenic not near genes chr3L 3968157 intergenic not near genes chr3L_6_3965001 chr3L_3965001 RAL-461 1106 chr3L 4080490 4080491 chr3L 4080559 4080594 5 91 0.0 3.0 1.5 2.0 104 chr3L 4080490 intron Gad1 - chr3L 4080542 intron Gad1 - chr3L 4080594 intron Gad1 - chr3L_5_4080001 chr3L_4080001 RAL-461 1107 chr3L 4195159 4195172 chr3L 4195254 4195264 4 100 2.0 6.0 4.0 0.8 105 chr3L 4195159 exon CG43367 + chr3L 4195212 intron CG43367 + chr3L 4195264 intron CG43367 + chr3L_4_4195001 chr3L_4195001 RAL-461 1108 chr3L 4208724 4208764 chr3L 4208822 4208834 8 94 4.0 4.0 4.0 1.6 110 chr3L 4208724 intron,intron CG43367 +,Cpr64Aa - chr3L 4208779 intron,intron CG43367 +,Cpr64Aa - chr3L 4208834 intron,intron CG43367 +,Cpr64Aa - chr3L_8_4205001 chr3L_4205001 RAL-461 1109 chr3L 4328737 4328762 chr3L 4336235 4336280 412 10 7510 3.5 4.0 3.8 2.1 7543 chr3L 4328737 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336280 exon Cip4 - chr3L_10_4330001 chr3L_4330001 RAL-461 1110 chr3L 4344872 4344906 chr3L 4344999 4345003 4 117 6.0 0.0 3.0 1.0 131 chr3L 4344872 intron Cip4 - chr3L 4344938 intron Cip4 - chr3L 4345003 intron Cip4 - chr3L_4_4340001 chr3L_4340001 RAL-461 1111 chr3L 4384885 4384924 chr3L 4384988 4385037 23 109 5.5 4.5 5.0 3.8 152 chr3L 4384885 5` UTR slow + chr3L 4384961 intron slow + chr3L 4385037 intron slow + chr3L_23_4380001 chr3L_4380001 RAL-461 1112 chr3L 4519401 4519448 chr3L 4519498 4519501 11 88 5.5 4.5 5.0 1.8 100 chr3L 4519401 intron Tie - chr3L 4519451 intron Tie - chr3L 4519501 intron Tie - chr3L_11_4515001 chr3L_4515001 RAL-461 1113 chr3L 4607246 4607289 chr3L 4607357 4607380 12 109 5.0 6.5 5.8 1.8 134 chr3L 4607246 intron Src64B - chr3L 4607313 intron Src64B - chr3L 4607380 intron Src64B - chr3L_12_4605001 chr3L_4605001 RAL-461 1114 chr3L 4629614 4629639 chr3L 4629804 4629825 5 188 2.0 1.5 1.8 1.8 211 chr3L 4629614 3` UTR axo - chr3L 4629720 3` UTR axo - chr3L 4629825 exon axo - chr3L_5_4625001 chr3L_4625001 RAL-461 1115 chr3L 4663975 4664017 chr3L 4664071 4664113 8 92 5.5 3.0 4.2 1.5 138 chr3L 4663975 intron axo - chr3L 4664044 intron axo - chr3L 4664113 intron axo - chr3L_8_4660001 chr3L_4660001 RAL-461 1116 chr3L 4680084 4680119 chr3L 4680190 4680225 11 104 4.0 0.0 2.0 3.7 141 chr3L 4680084 intron axo - chr3L 4680154 intron axo - chr3L 4680225 intron axo - chr3L_11_4680001 chr3L_4680001 RAL-461 1117 chr3L 4748693 4748714 chr3L 4748804 4748825 4 107 5.0 1.0 3.0 1.0 132 chr3L 4748693 intron RhoGEF64C + chr3L 4748759 intron RhoGEF64C + chr3L 4748825 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-461 1118 chr3L 4754442 4754472 chr3L 4754629 4754675 8 195 2.5 0.5 1.5 3.2 233 chr3L 4754442 intron RhoGEF64C + chr3L 4754558 intron RhoGEF64C + chr3L 4754675 intron RhoGEF64C + chr3L_8_4750001 chr3L_4750001 RAL-461 1119 chr3L 4775850 4775874 chr3L 4775935 4775982 12 98 4.5 6.5 5.5 1.8 132 chr3L 4775850 intron RhoGEF64C + chr3L 4775916 intron RhoGEF64C + chr3L 4775982 intron RhoGEF64C + chr3L_12_4775001 chr3L_4775001 RAL-461 1120 chr3L 4901113 4901160 chr3L 4907323 4907370 diver 4 6209 5.0 2.0 3.5 0.9 6257 chr3L 4901113 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907370 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-461 1121 chr3L 5030756 5030769 chr3L 5030852 5030865 4 96 4.0 4.0 4.0 0.8 109 chr3L 5030756 intron Con - chr3L 5030810 intron Con - chr3L 5030865 intron Con - chr3L_4_5030001 chr3L_5030001 RAL-461 1122 chr3L 5045436 5045458 chr3L 5050237 5050259 Doc 5 4800 8.0 2.5 5.2 0.8 4823 chr3L 5045436 intron Con - chr3L 5047848 intron Con - chr3L 5050259 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-461 1123 chr3L 5045468 5045480 chr3L 5050234 5050244 Doc 5 4780 5.5 1.5 3.5 1.1 4776 chr3L 5045468 intron Con - chr3L 5047856 intron Con - chr3L 5050244 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-461 1124 chr3L 5063563 5063596 chr3L 5063692 5063725 6 129 1.0 4.0 2.5 1.7 162 chr3L 5063563 intron Con - chr3L 5063644 intron Con - chr3L 5063725 intron Con - chr3L_6_5060001 chr3L_5060001 RAL-461 1125 chr3L 5066283 5066323 chr3L 5066402 5066442 11 116 2.5 2.5 2.5 3.1 159 chr3L 5066283 intron Con - chr3L 5066362 intron Con - chr3L 5066442 intron Con - chr3L_11_5065001 chr3L_5065001 RAL-461 1126 chr3L 5104470 5104499 chr3L 5124618 5124653 9 20151 4.0 1.5 2.8 2.4 20183 chr3L 5104470 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124653 intergenic not near genes chr3L_9_5110001 chr3L_5110001 RAL-461 1127 chr3L 5130938 5130947 chr3L 5131038 5131062 5 107 4.5 2.5 3.5 1.1 124 chr3L 5130938 intergenic not near genes chr3L 5131000 intergenic not near genes chr3L 5131062 intergenic CG15212 + chr3L_5_5130001 chr3L_5130001 RAL-461 1128 chr3L 5220806 5220857 chr3L 5220921 5220967 18 110 2.0 2.0 2.0 6.0 161 chr3L 5220806 intron shep - chr3L 5220886 intron shep - chr3L 5220967 intron shep - chr3L_18_5220001 chr3L_5220001 RAL-461 1129 chr3L 5250065 5250085 chr3L 5250162 5250183 5 97 2.0 1.0 1.5 2.0 118 chr3L 5250065 intron shep - chr3L 5250124 intron shep - chr3L 5250183 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-461 1130 chr3L 5376020 5376038 chr3L 5376119 5376137 6 97 0.0 7.0 3.5 1.3 117 chr3L 5376020 intergenic not near genes chr3L 5376078 intergenic not near genes chr3L 5376137 intergenic not near genes chr3L_6_5375001 chr3L_5375001 RAL-461 1131 chr3L 5388198 5388215 chr3L 5388527 5388559 6 339 9.5 3.5 6.5 0.8 361 chr3L 5388198 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388559 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-461 1132 chr3L 5396271 5396479 chr3L 5396370 5396586 16 104 4.0 1.5 2.8 4.2 315 chr3L 5396271 intergenic not near genes chr3L 5396428 intergenic not near genes chr3L 5396586 intergenic not near genes chr3L_16_5395001 chr3L_5395001 RAL-461 1133 chr3L 5521474 5521516 chr3L 5521583 5521624 15 107 6.0 4.0 5.0 2.5 150 chr3L 5521474 intron Lkr - chr3L 5521549 intron Lkr - chr3L 5521624 intron Lkr - chr3L_15_5520001 chr3L_5520001 RAL-461 1134 chr3L 5537701 5537748 chr3L 5538063 5538110 jockey 9 354 6.5 10.5 8.5 0.9 409 chr3L 5537701 intergenic not near genes chr3L 5537906 intergenic not near genes chr3L 5538110 intergenic CG10625 - chr3L_9_5535001 chr3L_5535001 RAL-461 1135 chr3L 5597811 5597830 chr3L 5597911 5597930 7 100 5.0 0.5 2.8 1.8 119 chr3L 5597811 intergenic CG5150 + chr3L 5597870 intergenic CG5150 + chr3L 5597930 intergenic not near genes chr3L_7_5595001 chr3L_5595001 RAL-461 1136 chr3L 5667608 5667637 chr3L 5667708 5667711 10 94 5.5 0.0 2.8 2.6 103 chr3L 5667608 intron sif + chr3L 5667660 intron sif + chr3L 5667711 intron sif + chr3L_10_5665001 chr3L_5665001 RAL-461 1137 chr3L 5910017 5910056 chr3L 5910278 5910317 pogo 15 258 6.5 8.0 7.2 1.8 300 chr3L 5910017 intron CG13288 + chr3L 5910167 intron CG13288 + chr3L 5910317 intron CG13288 + chr3L_15_5910001 chr3L_5910001 RAL-461 1138 chr3L 5926309 5926348 chr3L 5926508 5926511 5 188 2.0 2.5 2.2 1.6 202 chr3L 5926309 intron Vap-33B + chr3L 5926410 intron Vap-33B + chr3L 5926511 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-461 1139 chr3L 5983817 5983865 chr3L 5983952 5984006 13 137 3.5 0.0 1.8 4.6 189 chr3L 5983817 3` UTR CR45439 - chr3L 5983912 intergenic CR45439 -,CR45440 - chr3L 5984006 intergenic CR45440 -,CR45439 - chr3L_13_5980001 chr3L_5980001 RAL-461 1140 chr3L 5987029 5987048 chr3L 5987130 5987149 6 101 1.0 4.0 2.5 1.7 120 chr3L 5987029 intergenic not near genes chr3L 5987089 intergenic not near genes chr3L 5987149 intergenic not near genes chr3L_6_5985001 chr3L_5985001 RAL-461 1141 chr3L 6001675 6001713 chr3L 6004385 6004433 jockey 15 2716 5.0 3.0 4.0 3.0 2758 chr3L 6001675 intron PVRAP + chr3L 6003054 intron PVRAP + chr3L 6004433 intron PVRAP + chr3L_15_6000001 chr3L_6000001 RAL-461 1142 chr3L 6052125 6052145 chr3L 6052225 6052251 4 99 0.0 3.5 1.8 1.4 126 chr3L 6052125 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052251 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-461 1143 chr3L 6185581 6185633 chr3L 6185679 6185714 18 95 4.0 6.5 5.2 2.9 133 chr3L 6185581 exon CG43293 + chr3L 6185648 intron CG43293 + chr3L 6185714 exon CG43293 + chr3L_18_6185001 chr3L_6185001 RAL-461 1144 chr3L 6220925 6220948 chr3L 6230070 6230120 roo 5 9163 4.0 5.5 4.8 0.9 9195 chr3L 6220925 5` UTR pncr008:3L + chr3L 6225522 intergenic not near genes chr3L 6230120 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-461 1145 chr3L 6278040 6278237 chr3L 6278130 6278333 6 92 3.0 4.0 3.5 1.3 293 chr3L 6278040 intergenic not near genes chr3L 6278186 intergenic not near genes chr3L 6278333 intergenic not near genes chr3L_6_6275001 chr3L_6275001 RAL-461 1146 chr3L 6280177 6280198 chr3L 6280274 6280279 5 93 2.0 1.0 1.5 2.0 102 chr3L 6280177 intergenic not near genes chr3L 6280228 intergenic not near genes chr3L 6280279 intergenic not near genes chr3L_5_6280001 chr3L_6280001 RAL-461 1147 chr3L 6335023 6335042 chr3L 6335498 6335533 297 5 487 1.0 4.5 2.8 1.3 510 chr3L 6335023 intron CG13300 - chr3L 6335278 intron CG13300 - chr3L 6335533 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-461 1148 chr3L 6338960 6338991 chr3L 6339275 6339311 6 315 1.0 1.5 1.2 2.7 351 chr3L 6338960 intron CG13300 - chr3L 6339136 intron CG13300 - chr3L 6339311 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-461 1149 chr3L 6362366 6362408 chr3L 6362463 6362505 16 94 2.5 2.5 2.5 4.6 139 chr3L 6362366 intergenic not near genes chr3L 6362436 intergenic not near genes chr3L 6362505 intergenic not near genes chr3L_16_6360001 chr3L_6360001 RAL-461 1150 chr3L 6405645 6405667 chr3L 6432130 6432137 roo 5 26480 4.0 0.0 2.0 1.7 26492 chr3L 6405645 intron CG42747 + chr3L 6418891 intron CG42747 + chr3L 6432137 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-461 1151 chr3L 6434559 6434574 chr3L 6434641 6434665 4 91 1.5 3.0 2.2 1.2 106 chr3L 6434559 intron CG42747 + chr3L 6434612 intron CG42747 + chr3L 6434665 intron CG42747 + chr3L_4_6430001 chr3L_6430001 RAL-461 1152 chr3L 6468267 6468306 chr3L 6468699 6468717 6 428 2.5 2.0 2.2 1.9 450 chr3L 6468267 intron CG42747 + chr3L 6468492 intron CG42747 + chr3L 6468717 intron CG42747 + chr3L_6_6465001 chr3L_6465001 RAL-461 1153 chr3L 6507804 6507845 chr3L 6507901 6507942 8 95 14.0 17.0 15.5 0.5 138 chr3L 6507804 intron sfl + chr3L 6507873 intron sfl + chr3L 6507942 intron sfl + chr3L_8_6505001 chr3L_6505001 RAL-461 1154 chr3L 6781109 6781133 chr3L 6783142 6783146 Doc 6 2026 11.5 0.0 5.8 0.9 2037 chr3L 6781109 intergenic not near genes chr3L 6782128 intergenic not near genes chr3L 6783146 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-461 1155 chr3L 6804709 6804728 chr3L 6804814 6804826 5 103 0.0 1.5 0.8 2.8 117 chr3L 6804709 intergenic not near genes chr3L 6804768 intergenic not near genes chr3L 6804826 intergenic not near genes chr3L_5_6800001 chr3L_6800001 RAL-461 1156 chr3L 6875219 6875241 chr3L 6875316 6875338 4 97 4.5 1.5 3.0 1.0 119 chr3L 6875219 intergenic not near genes chr3L 6875278 intergenic not near genes chr3L 6875338 intergenic not near genes chr3L_4_6875001 chr3L_6875001 RAL-461 1157 chr3L 6887281 6887299 chr3L 6895255 6895277 roo 6 7977 1.0 3.0 2.0 2.0 7996 chr3L 6887281 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895277 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-461 1158 chr3L 6921992 6922010 chr3L 6922100 6922103 4 102 5.0 5.0 5.0 0.7 111 chr3L 6921992 intergenic not near genes chr3L 6922048 intergenic not near genes chr3L 6922103 intergenic not near genes chr3L_4_6920001 chr3L_6920001 RAL-461 1159 chr3L 6922011 6922037 chr3L 6922096 6922143 9 92 3.0 4.5 3.8 1.9 132 chr3L 6922011 intergenic not near genes chr3L 6922077 intergenic not near genes chr3L 6922143 intergenic not near genes chr3L_9_6920001 chr3L_6920001 RAL-461 1160 chr3L 6994893 6994911 chr3L 6995523 6995541 BS 4 629 1.0 1.5 1.2 1.8 648 chr3L 6994893 intergenic bin + chr3L 6995217 intergenic not near genes chr3L 6995541 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-461 1161 chr3L 7023385 7023432 chr3L 7023499 7023546 4 114 2.0 7.5 4.8 0.7 161 chr3L 7023385 intron Mp + chr3L 7023466 intron Mp + chr3L 7023546 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-461 1162 chr3L 7057740 7057755 chr3L 7058544 7058578 4 818 4.0 6.0 5.0 0.7 838 chr3L 7057740 intergenic not near genes chr3L 7058159 intergenic not near genes chr3L 7058578 intergenic CG8641 - chr3L_4_7055001 chr3L_7055001 RAL-461 1163 chr3L 7100416 7100457 chr3L 7100523 7100538 9 97 3.5 4.0 3.8 1.9 122 chr3L 7100416 intron form3 + chr3L 7100477 intron form3 + chr3L 7100538 intron form3 + chr3L_9_7100001 chr3L_7100001 RAL-461 1164 chr3L 7112563 7112612 chr3L 7112669 7112719 16 98 3.5 3.0 3.2 3.8 156 chr3L 7112563 intron form3 + chr3L 7112641 intron form3 + chr3L 7112719 intron form3 + chr3L_16_7110001 chr3L_7110001 RAL-461 1165 chr3L 7187383 7187420 chr3L 7187485 7187522 7 102 0.5 0.0 0.2 5.8 139 chr3L 7187383 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187522 intron Dscam2 - chr3L_7_7185001 chr3L_7185001 RAL-461 1166 chr3L 7219803 7219851 chr3L 7219918 7219952 15 113 4.5 4.0 4.2 2.9 149 chr3L 7219803 intergenic not near genes chr3L 7219878 intergenic not near genes chr3L 7219952 intergenic not near genes chr3L_15_7215001 chr3L_7215001 RAL-461 1167 chr3L 7227360 7227399 chr3L 7227510 7227535 10 151 4.0 5.0 4.5 1.8 175 chr3L 7227360 intergenic not near genes chr3L 7227448 intergenic not near genes chr3L 7227535 intergenic not near genes chr3L_10_7225001 chr3L_7225001 RAL-461 1168 chr3L 7258911 7258932 chr3L 7259071 7259092 8 160 3.5 4.5 4.0 1.6 181 chr3L 7258911 intron CG14830 - chr3L 7259002 intron CG14830 - chr3L 7259092 intron CG14830 - chr3L_8_7255001 chr3L_7255001 RAL-461 1169 chr3L 7276196 7276239 chr3L 7276300 7276342 12 103 4.0 5.0 4.5 2.2 146 chr3L 7276196 intron unc-13-4A - chr3L 7276269 intron unc-13-4A - chr3L 7276342 intron unc-13-4A - chr3L_12_7275001 chr3L_7275001 RAL-461 1170 chr3L 7285442 7285478 chr3L 7285529 7285565 5 82 1.0 2.5 1.8 1.8 123 chr3L 7285442 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285565 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-461 1171 chr3L 7355720 7355763 chr3L 7363641 7363656 4 7900 16.5 10.0 13.2 0.3 7936 chr3L 7355720 exon CTCF - chr3L 7359688 exon pst - chr3L 7363656 exon Sec63 + chr3L_4_7355001 chr3L_7355001 RAL-461 1172 chr3L 7377312 7377344 chr3L 7380437 7380469 297 13 3123 5.0 9.0 7.0 1.6 3157 chr3L 7377312 intron SMSr - chr3L 7378890 intron SMSr - chr3L 7380469 intron SMSr - chr3L_13_7375001 chr3L_7375001 RAL-461 1173 chr3L 7460382 7460402 chr3L 7460461 7460506 7 100 2.0 1.5 1.8 2.5 124 chr3L 7460382 intergenic not near genes chr3L 7460444 intergenic not near genes chr3L 7460506 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-461 1174 chr3L 7462962 7462985 chr3L 7463061 7463084 10 98 2.5 5.0 3.8 2.1 122 chr3L 7462962 intergenic not near genes chr3L 7463023 intergenic not near genes chr3L 7463084 intergenic not near genes chr3L_10_7460001 chr3L_7460001 RAL-461 1175 chr3L 7498718 7498737 chr3L 7503544 7503563 F-element 5 4826 3.5 7.5 5.5 0.8 4845 chr3L 7498718 5` UTR CG8539 - chr3L 7501140 intergenic not near genes chr3L 7503563 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-461 1176 chr3L 7505395 7505438 chr3L 7505491 7505524 14 95 3.0 4.5 3.8 2.9 129 chr3L 7505395 intergenic CG7548 - chr3L 7505460 intergenic CG7548 - chr3L 7505524 intergenic CG7548 - chr3L_14_7505001 chr3L_7505001 RAL-461 1177 chr3L 7524133 7524169 chr3L 7524230 7524271 9 98 4.5 0.0 2.2 2.8 138 chr3L 7524133 intron ltl + chr3L 7524202 intron ltl + chr3L 7524271 intron ltl + chr3L_9_7520001 chr3L_7520001 RAL-461 1178 chr3L 7547787 7547825 chr3L 7547980 7548018 6 193 2.5 4.5 3.5 1.3 231 chr3L 7547787 intergenic not near genes chr3L 7547902 intergenic not near genes chr3L 7548018 intergenic not near genes chr3L_6_7545001 chr3L_7545001 RAL-461 1179 chr3L 7574840 7574857 chr3L 7574937 7574954 5 97 0.0 1.5 0.8 2.8 114 chr3L 7574840 intergenic not near genes chr3L 7574897 intergenic not near genes chr3L 7574954 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-461 1180 chr3L 7576205 7576242 chr3L 7576303 7576330 10 98 3.0 5.0 4.0 2.0 125 chr3L 7576205 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576330 intergenic not near genes chr3L_10_7575001 chr3L_7575001 RAL-461 1181 chr3L 7576243 7576245 chr3L 7576299 7576353 4 95 2.5 4.0 3.2 1.0 110 chr3L 7576243 intergenic not near genes chr3L 7576298 intergenic not near genes chr3L 7576353 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-461 1182 chr3L 7648097 7648131 chr3L 7648193 7648209 5 79 7.5 0.0 3.8 1.0 112 chr3L 7648097 intergenic not near genes chr3L 7648153 intergenic not near genes chr3L 7648209 intergenic not near genes chr3L_5_7645001 chr3L_7645001 RAL-461 1183 chr3L 7760085 7760107 chr3L 7760165 7760177 6 83 2.5 6.0 4.2 1.2 92 chr3L 7760085 intergenic Hn + chr3L 7760131 intergenic Hn + chr3L 7760177 intergenic Hn + chr3L_6_7760001 chr3L_7760001 RAL-461 1184 chr3L 7793717 7793742 chr3L 7800764 7800804 297 9 7065 9.0 4.0 6.5 1.2 7087 chr3L 7793717 intron CG32369 - chr3L 7797260 intron CG32369 - chr3L 7800804 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-461 1185 chr3L 7829531 7829579 chr3L 7829634 7829653 11 91 4.5 3.5 4.0 2.2 122 chr3L 7829531 intron Pdp1 - chr3L 7829592 intron Pdp1 - chr3L 7829653 intron Pdp1 - chr3L_11_7825001 chr3L_7825001 RAL-461 1186 chr3L 7842306 7842342 chr3L 7842952 7842970 5 643 0.5 2.5 1.5 2.0 664 chr3L 7842306 intron Pdp1 - chr3L 7842638 intron Pdp1 - chr3L 7842970 intron Pdp1 - chr3L_5_7840001 chr3L_7840001 RAL-461 1187 chr3L 7886503 7886545 chr3L 7889041 7889081 Stalker4 6 2536 1.5 2.5 2.0 2.0 2578 chr3L 7886503 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889081 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-461 1188 chr3L 7903052 7903090 chr3L 7903149 7903192 15 97 0.0 10.5 5.2 2.4 140 chr3L 7903052 intron pbl - chr3L 7903122 intron pbl - chr3L 7903192 intron pbl - chr3L_15_7900001 chr3L_7900001 RAL-461 1189 chr3L 7916811 7916853 chr3L 7926002 7926044 roo 14 9190 4.5 2.5 3.5 3.1 9233 chr3L 7916811 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926044 3` UTR syd - chr3L_14_7920001 chr3L_7920001 RAL-461 1190 chr3L 7985352 7985397 chr3L 7987700 7987719 NOF 15 2339 3.0 4.5 3.8 3.1 2367 chr3L 7985352 intron nmo + chr3L 7986536 intron nmo + chr3L 7987719 intron nmo + chr3L_15_7985001 chr3L_7985001 RAL-461 1191 chr3L 8019730 8019735 chr3L 8024123 8024171 NOF 4 4424 0.0 2.5 1.2 1.8 4441 chr3L 8019730 intron nmo + chr3L 8021950 intron nmo + chr3L 8024171 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-461 1192 chr3L 8056228 8056273 chr3L 8056990 8057034 10 769 25.0 41.5 33.2 0.3 806 chr3L 8056228 intron bip1 - chr3L 8056631 intron bip1 - chr3L 8057034 intron bip1 - chr3L_10_8055001 chr3L_8055001 RAL-461 1193 chr3L 8062846 8062972 chr3L 8062941 8063122 5 116 4.0 3.5 3.8 1.0 276 chr3L 8062846 intergenic not near genes chr3L 8062984 intergenic not near genes chr3L 8063122 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-461 1194 chr3L 8085935 8085982 chr3L 8086153 8086200 16 217 3.5 2.0 2.8 4.2 265 chr3L 8085935 intron Ect4 + chr3L 8086068 intron Ect4 + chr3L 8086200 intron Ect4 + chr3L_16_8085001 chr3L_8085001 RAL-461 1195 chr3L 8226704 8226732 chr3L 8226813 8226851 4 115 2.5 0.0 1.2 1.8 147 chr3L 8226704 intergenic not near genes chr3L 8226778 intergenic not near genes chr3L 8226851 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-461 1196 chr3L 8443550 8443581 chr3L 8443651 8443683 7 98 5.0 5.0 5.0 1.2 133 chr3L 8443550 3` UTR CG6983 - chr3L 8443616 3` UTR CG6983 - chr3L 8443683 3` UTR CG6983 - chr3L_7_8440001 chr3L_8440001 RAL-461 1197 chr3L 8456470 8456479 chr3L 8456574 8456576 4 102 2.0 10.5 6.2 0.6 106 chr3L 8456470 intron Gug + chr3L 8456523 intron Gug + chr3L 8456576 intron Gug + chr3L_4_8455001 chr3L_8455001 RAL-461 1198 chr3L 8498289 8498315 chr3L 8505776 8505802 blood 4 7484 8.0 9.5 8.8 0.4 7513 chr3L 8498289 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505802 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-461 1199 chr3L 8680376 8680409 chr3L 8680492 8680503 5 108 4.5 6.0 5.2 0.8 127 chr3L 8680376 intergenic not near genes chr3L 8680440 intergenic not near genes chr3L 8680503 intergenic not near genes chr3L_5_8680001 chr3L_8680001 RAL-461 1200 chr3L 8782122 8782152 chr3L 8782268 8782298 15 145 2.5 4.5 3.5 3.3 176 chr3L 8782122 intron Fhos + chr3L 8782210 intron Fhos + chr3L 8782298 intron Fhos + chr3L_15_8780001 chr3L_8780001 RAL-461 1201 chr3L 8791259 8791299 chr3L 8796699 8796709 I-element 18 5436 3.5 9.0 6.2 2.5 5450 chr3L 8791259 exon Fhos + chr3L 8793984 intron Fhos + chr3L 8796709 intron Fhos + chr3L_18_8790001 chr3L_8790001 RAL-461 1202 chr3L 8832387 8832430 chr3L 8832500 8832543 9 111 4.5 5.5 5.0 1.5 156 chr3L 8832387 intron dally + chr3L 8832465 intron dally + chr3L 8832543 intron dally + chr3L_9_8830001 chr3L_8830001 RAL-461 1203 chr3L 8861530 8861554 chr3L 8861612 8861665 7 105 0.0 0.5 0.2 5.8 135 chr3L 8861530 intron dally + chr3L 8861598 intron dally + chr3L 8861665 intron dally + chr3L_7_8860001 chr3L_8860001 RAL-461 1204 chr3L 8928252 8928296 chr3L 8928348 8928392 4 96 2.0 7.5 4.8 0.7 140 chr3L 8928252 intron Tsp66E + chr3L 8928322 intron Tsp66E + chr3L 8928392 intron Tsp66E + chr3L_4_8925001 chr3L_8925001 RAL-461 1205 chr3L 8949381 8949501 chr3L 8949498 8949602 4 109 0.0 0.0 0.0 4.0 221 chr3L 8949381 intron,intron CG43783 -,orb2 - chr3L 8949492 intron,intron CG43783 -,orb2 - chr3L 8949602 intron,intron CG43783 -,orb2 - chr3L_4_8945001 chr3L_8945001 RAL-461 1206 chr3L 9003944 9003978 chr3L 9004032 9004053 6 95 3.5 4.0 3.8 1.2 109 chr3L 9003944 intergenic not near genes chr3L 9003998 intergenic not near genes chr3L 9004053 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-461 1207 chr3L 9013689 9013692 chr3L 18417066 18417066 5 9403375 15.5 7.0 11.2 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-461 1208 chr3L 9030413 9030451 chr3L 9030507 9030550 7 98 3.0 3.5 3.2 1.7 137 chr3L 9030413 intergenic not near genes chr3L 9030482 intergenic not near genes chr3L 9030550 intergenic not near genes chr3L_7_9030001 chr3L_9030001 RAL-461 1209 chr3L 9036434 9036468 chr3L 9036512 9036567 9 89 1.0 3.0 2.0 3.0 133 chr3L 9036434 intergenic not near genes chr3L 9036500 intergenic not near genes chr3L 9036567 intergenic not near genes chr3L_9_9035001 chr3L_9035001 RAL-461 1210 chr3L 9076914 9076955 chr3L 9084487 9084505 412 17 7574 4.5 3.0 3.8 3.5 7591 chr3L 9076914 exon Tequila + chr3L 9080710 intron Tequila + chr3L 9084505 exon Tequila + chr3L_17_9080001 chr3L_9080001 RAL-461 1211 chr3L 9164677 9164729 chr3L 9166164 9166201 hobo 12 1485 4.5 0.0 2.2 3.8 1524 chr3L 9164677 intron Rdl - chr3L 9165439 intron Rdl - chr3L 9166201 intron Rdl - chr3L_12_9165001 chr3L_9165001 RAL-461 1212 chr3L 9219263 9219274 chr3L 9219914 9219943 jockey 7 667 2.5 3.0 2.8 1.8 680 chr3L 9219263 intergenic not near genes chr3L 9219603 intergenic not near genes chr3L 9219943 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-461 1213 chr3L 9300262 9300314 chr3L 9300388 9300424 11 124 0.0 4.5 2.2 3.4 162 chr3L 9300262 intergenic not near genes chr3L 9300343 intergenic not near genes chr3L 9300424 intergenic not near genes chr3L_11_9300001 chr3L_9300001 RAL-461 1214 chr3L 9397975 9398010 chr3L 9398057 9398107 14 91 7.0 5.5 6.2 1.9 132 chr3L 9397975 intron CG4080 - chr3L 9398041 intron CG4080 - chr3L 9398107 intron CG4080 - chr3L_14_9395001 chr3L_9395001 RAL-461 1215 chr3L 9443495 9443522 chr3L 9445306 9445306 S-element 4 1802 3.5 0.5 2.0 1.3 1811 chr3L 9443495 intron CG33926 + chr3L 9444400 intron CG33926 + chr3L 9445306 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-461 1216 chr3L 9498196 9498224 chr3L 9498293 9498316 8 96 5.0 3.0 4.0 1.6 120 chr3L 9498196 intron path - chr3L 9498256 intron path - chr3L 9498316 intron path - chr3L_8_9495001 chr3L_9495001 RAL-461 1217 chr3L 9501704 9501719 chr3L 9502210 9502225 roo 5 506 1.0 5.5 3.2 1.2 521 chr3L 9501704 intron path - chr3L 9501964 intron path - chr3L 9502225 intron path - chr3L_5_9500001 chr3L_9500001 RAL-461 1218 chr3L 9510891 9510955 chr3L 9511004 9511034 7 101 0.0 0.5 0.2 5.8 143 chr3L 9510891 intron RpS9 - chr3L 9510962 intron RpS9 - chr3L 9511034 intron RpS9 - chr3L_7_9510001 chr3L_9510001 RAL-461 1219 chr3L 9513425 9513464 chr3L 9513532 9513571 12 105 3.0 4.5 3.8 2.5 146 chr3L 9513425 intergenic CG33702 - chr3L 9513498 intergenic CG33702 - chr3L 9513571 intergenic CG33702 - chr3L_12_9510001 chr3L_9510001 RAL-461 1220 chr3L 9526471 9526518 chr3L 9528171 9528183 Doc 18 1694 3.5 5.5 4.5 3.3 1712 chr3L 9526471 intergenic not near genes chr3L 9527327 intergenic not near genes chr3L 9528183 intergenic not near genes chr3L_18_9525001 chr3L_9525001 RAL-461 1221 chr3L 9571881 9571926 chr3L 9572249 9572294 jockey 15 367 6.5 6.0 6.2 2.1 413 chr3L 9571881 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572294 intron CG42673 + chr3L_15_9570001 chr3L_9570001 RAL-461 1222 chr3L 9572280 9572333 chr3L 9572379 9572395 11 95 4.5 1.5 3.0 2.8 115 chr3L 9572280 intron CG42673 + chr3L 9572338 intron CG42673 + chr3L 9572395 intron CG42673 + chr3L_11_9570001 chr3L_9570001 RAL-461 1223 chr3L 9575897 9575922 chr3L 9580995 9581020 jockey 12 5095 5.5 5.0 5.2 1.9 5123 chr3L 9575897 intron CG42673 + chr3L 9578458 intron CG42673 + chr3L 9581020 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-461 1224 chr3L 9629724 9629768 chr3L 9629820 9629864 10 96 6.5 7.5 7.0 1.2 140 chr3L 9629724 intron CG8336 + chr3L 9629794 intron CG8336 + chr3L 9629864 intron CG8336 + chr3L_10_9625001 chr3L_9625001 RAL-461 1225 chr3L 9637833 9637886 chr3L 9637935 9637988 13 100 7.0 3.5 5.2 2.1 155 chr3L 9637833 exon fry - chr3L 9637910 intron fry - chr3L 9637988 intron fry - chr3L_13_9635001 chr3L_9635001 RAL-461 1226 chr3L 9639007 9639058 chr3L 9639112 9639158 10 101 0.5 3.5 2.0 3.3 151 chr3L 9639007 intron,3` UTR fry -,CG8329 + chr3L 9639082 intron fry - chr3L 9639158 intron fry - chr3L_10_9635001 chr3L_9635001 RAL-461 1227 chr3L 9646473 9646499 chr3L 9646593 9646634 6 126 4.0 0.0 2.0 2.0 161 chr3L 9646473 intron,intron fry -,CG33696 + chr3L 9646554 intron,intron fry -,CG33696 + chr3L 9646634 intron,intron fry -,CG33696 + chr3L_6_9645001 chr3L_9645001 RAL-461 1228 chr3L 9646796 9646842 chr3L 9646904 9646949 12 108 3.0 0.5 1.8 4.3 153 chr3L 9646796 intron,intron fry -,CG33696 + chr3L 9646872 intron,intron fry -,CG33696 + chr3L 9646949 intron,intron fry -,CG33696 + chr3L_12_9645001 chr3L_9645001 RAL-461 1229 chr3L 9715576 9715627 chr3L 9715672 9715718 9 95 3.5 1.0 2.2 2.8 142 chr3L 9715576 intron vsg + chr3L 9715647 intron vsg + chr3L 9715718 intron vsg + chr3L_9_9715001 chr3L_9715001 RAL-461 1230 chr3L 9741607 9741629 chr3L 9741719 9741741 9 111 5.0 4.5 4.8 1.6 134 chr3L 9741607 intron,intron CG42268 -,CR44348 + chr3L 9741674 intron,intron CG42268 -,CR44348 + chr3L 9741741 intron,intron CG42268 -,CR44348 + chr3L_9_9740001 chr3L_9740001 RAL-461 1231 chr3L 9786939 9786970 chr3L 9787035 9787048 4 86 1.0 2.5 1.8 1.4 109 chr3L 9786939 intergenic CG8177 + chr3L 9786994 intergenic not near genes chr3L 9787048 intergenic not near genes chr3L_4_9785001 chr3L_9785001 RAL-461 1232 chr3L 9818836 9818883 chr3L 9818959 9818968 14 108 1.0 1.0 1.0 7.0 132 chr3L 9818836 intron CG43897 + chr3L 9818902 intron CG43897 + chr3L 9818968 intron CG43897 + chr3L_14_9815001 chr3L_9815001 RAL-461 1233 chr3L 9831717 9831737 chr3L 9831806 9831838 6 99 0.0 8.0 4.0 1.2 121 chr3L 9831717 intron CG43897 + chr3L 9831778 intron CG43897 + chr3L 9831838 intron CG43897 + chr3L_6_9830001 chr3L_9830001 RAL-461 1234 chr3L 9929666 9929688 chr3L 9938462 9938489 roo 7 8800 1.5 7.0 4.2 1.3 8823 chr3L 9929666 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938489 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-461 1235 chr3L 9939166 9939216 chr3L 9939269 9939319 18 100 3.0 6.5 4.8 3.1 153 chr3L 9939166 intron CG34356 + chr3L 9939242 intron CG34356 + chr3L 9939319 intron CG34356 + chr3L_18_9935001 chr3L_9935001 RAL-461 1236 chr3L 9951178 9951231 chr3L 9951285 9951308 9 99 4.5 4.5 4.5 1.6 130 chr3L 9951178 intron CG34356 + chr3L 9951243 intron CG34356 + chr3L 9951308 intron CG34356 + chr3L_9_9950001 chr3L_9950001 RAL-461 1237 chr3L 10049522 10049565 chr3L 10049622 10049665 14 98 4.5 3.5 4.0 2.8 143 chr3L 10049522 intron dpr6 + chr3L 10049594 intron dpr6 + chr3L 10049665 intron dpr6 + chr3L_14_10045001 chr3L_10045001 RAL-461 1238 chr3L 10060095 10060117 chr3L 10067694 10067716 17.6 6 7598 8.5 4.5 6.5 0.8 7621 chr3L 10060095 intron dpr6 + chr3L 10063906 intron dpr6 + chr3L 10067716 intron dpr6 + chr3L_6_10060001 chr3L_10060001 RAL-461 1239 chr3L 10161431 10161441 chr3L 10161530 10161539 4 99 0.0 3.5 1.8 1.4 108 chr3L 10161431 intron dpr10 - chr3L 10161485 intron dpr10 - chr3L 10161539 intron dpr10 - chr3L_4_10160001 chr3L_10160001 RAL-461 1240 chr3L 10214746 10214828 chr3L 10214823 10214950 7 125 0.5 0.5 0.5 4.7 204 chr3L 10214746 intergenic not near genes chr3L 10214848 intergenic not near genes chr3L 10214950 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-461 1241 chr3L 10222733 10222777 chr3L 10222821 10222877 7 98 0.5 3.5 2.0 2.3 144 chr3L 10222733 intron scramb1 - chr3L 10222805 intron scramb1 - chr3L 10222877 intron scramb1 - chr3L_7_10220001 chr3L_10220001 RAL-461 1242 chr3L 10298662 10298678 chr3L 10298769 10298785 5 105 1.5 6.0 3.8 1.0 123 chr3L 10298662 intergenic not near genes chr3L 10298724 intergenic not near genes chr3L 10298785 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-461 1243 chr3L 10298681 10298701 chr3L 10298757 10298808 12 104 1.0 3.0 2.0 4.0 127 chr3L 10298681 intergenic not near genes chr3L 10298744 intergenic not near genes chr3L 10298808 intergenic not near genes chr3L_12_10295001 chr3L_10295001 RAL-461 1244 chr3L 10300039 10300071 chr3L 10300151 10300183 7 108 2.0 4.5 3.2 1.7 144 chr3L 10300039 intergenic not near genes chr3L 10300111 intergenic not near genes chr3L 10300183 intergenic not near genes chr3L_7_10300001 chr3L_10300001 RAL-461 1245 chr3L 10308734 10308773 chr3L 10308831 10308870 11 96 0.5 3.5 2.0 3.7 136 chr3L 10308734 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308870 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-461 1246 chr3L 10314463 10314498 chr3L 10314563 10314598 14 97 3.5 1.5 2.5 4.0 135 chr3L 10314463 intergenic not near genes chr3L 10314530 intergenic not near genes chr3L 10314598 intergenic not near genes chr3L_14_10310001 chr3L_10310001 RAL-461 1247 chr3L 10328096 10328117 chr3L 10328227 10328249 6 132 4.0 8.0 6.0 0.9 153 chr3L 10328096 intergenic not near genes chr3L 10328172 intergenic not near genes chr3L 10328249 intergenic not near genes chr3L_6_10325001 chr3L_10325001 RAL-461 1248 chr3L 10367496 10367515 chr3L 10367593 10367612 8 96 3.5 2.5 3.0 2.0 116 chr3L 10367496 intergenic CR44327 + chr3L 10367554 intergenic CR44327 + chr3L 10367612 intergenic CR44327 + chr3L_8_10365001 chr3L_10365001 RAL-461 1249 chr3L 10380092 10380135 chr3L 10380511 10380555 8 422 7.5 6.0 6.8 1.0 463 chr3L 10380092 intergenic not near genes chr3L 10380324 intergenic not near genes chr3L 10380555 intergenic not near genes chr3L_8_10380001 chr3L_10380001 RAL-461 1250 chr3L 10397278 10397326 chr3L 10397377 10397424 15 99 7.0 4.5 5.8 2.2 146 chr3L 10397278 intergenic not near genes chr3L 10397351 intergenic not near genes chr3L 10397424 intergenic not near genes chr3L_15_10395001 chr3L_10395001 RAL-461 1251 chr3L 10414950 10414974 chr3L 10417312 10417330 Doc 8 2374 0.0 4.0 2.0 2.7 2380 chr3L 10414950 intergenic CG12362 + chr3L 10416140 intergenic not near genes chr3L 10417330 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-461 1252 chr3L 10417554 10417603 chr3L 10417651 10417660 5 81 2.0 1.0 1.5 2.0 106 chr3L 10417554 intergenic not near genes chr3L 10417607 intergenic not near genes chr3L 10417660 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-461 1253 chr3L 10477084 10477103 chr3L 10477205 10477208 6 118 3.5 4.5 4.0 1.2 124 chr3L 10477084 intergenic not near genes chr3L 10477146 intergenic not near genes chr3L 10477208 intergenic not near genes chr3L_6_10475001 chr3L_10475001 RAL-461 1254 chr3L 10477104 10477125 chr3L 10477200 10477246 8 111 3.5 4.0 3.8 1.7 142 chr3L 10477104 intergenic not near genes chr3L 10477175 intergenic not near genes chr3L 10477246 intergenic not near genes chr3L_8_10475001 chr3L_10475001 RAL-461 1255 chr3L 10600448 10600475 chr3L 10600550 10600577 5 102 2.5 2.5 2.5 1.4 129 chr3L 10600448 intergenic not near genes chr3L 10600512 intergenic not near genes chr3L 10600577 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-461 1256 chr3L 10614750 10614788 chr3L 10614857 10614887 5 102 0.0 3.0 1.5 2.0 137 chr3L 10614750 intergenic not near genes chr3L 10614818 intergenic not near genes chr3L 10614887 intergenic not near genes chr3L_5_10610001 chr3L_10610001 RAL-461 1257 chr3L 10621825 10621872 chr3L 10621932 10621979 10 102 2.0 2.0 2.0 3.3 154 chr3L 10621825 intergenic not near genes chr3L 10621902 intergenic not near genes chr3L 10621979 intergenic not near genes chr3L_10_10620001 chr3L_10620001 RAL-461 1258 chr3L 10653331 10653359 chr3L 10653431 10653453 9 103 1.5 6.5 4.0 1.8 122 chr3L 10653331 intron CG32066 - chr3L 10653392 intron CG32066 - chr3L 10653453 intron CG32066 - chr3L_9_10650001 chr3L_10650001 RAL-461 1259 chr3L 10654118 10654147 chr3L 10654214 10654239 6 99 3.5 1.5 2.5 1.7 121 chr3L 10654118 intron CG32066 - chr3L 10654178 intron CG32066 - chr3L 10654239 intron CG32066 - chr3L_6_10650001 chr3L_10650001 RAL-461 1260 chr3L 10654958 10654999 chr3L 10655058 10655099 7 93 1.5 5.0 3.2 1.7 141 chr3L 10654958 intron CG32066 - chr3L 10655028 intron CG32066 - chr3L 10655099 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-461 1261 chr3L 10749439 10749451 chr3L 10749528 10749550 4 96 0.0 5.0 2.5 1.1 111 chr3L 10749439 intergenic not near genes chr3L 10749494 intergenic not near genes chr3L 10749550 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-461 1262 chr3L 10762816 10762832 chr3L 10762920 10762936 4 102 5.5 1.5 3.5 0.9 120 chr3L 10762816 intergenic not near genes chr3L 10762876 intergenic not near genes chr3L 10762936 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-461 1263 chr3L 10820487 10820517 chr3L 10820666 10820695 9 175 1.0 0.5 0.8 5.0 208 chr3L 10820487 intergenic not near genes chr3L 10820591 intergenic not near genes chr3L 10820695 intergenic not near genes chr3L_9_10820001 chr3L_10820001 RAL-461 1264 chr3L 10940067 10940098 chr3L 10940146 10940167 6 80 1.5 1.0 1.2 2.7 100 chr3L 10940067 intergenic not near genes chr3L 10940117 intergenic not near genes chr3L 10940167 intergenic not near genes chr3L_6_10940001 chr3L_10940001 RAL-461 1265 chr3L 10941418 10941424 chr3L 10941517 10941524 4 102 5.0 0.0 2.5 1.1 106 chr3L 10941418 intergenic not near genes chr3L 10941471 intergenic not near genes chr3L 10941524 intergenic not near genes chr3L_4_10940001 chr3L_10940001 RAL-461 1266 chr3L 11083492 11083539 chr3L 11083600 11083639 15 111 4.5 3.5 4.0 3.0 147 chr3L 11083492 intron JIL-1 - chr3L 11083566 intron JIL-1 - chr3L 11083639 intron JIL-1 - chr3L_15_11080001 chr3L_11080001 RAL-461 1267 chr3L 11087046 11087090 chr3L 11088855 11088894 S-element 10 1804 2.5 1.5 2.0 3.3 1848 chr3L 11087046 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088894 intron JIL-1 - chr3L_10_11085001 chr3L_11085001 RAL-461 1268 chr3L 11105281 11105290 chr3L 11107012 11107021 X-element 4 1731 8.0 1.0 4.5 0.7 1740 chr3L 11105281 intergenic not near genes chr3L 11106151 intergenic not near genes chr3L 11107021 3` UTR CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-461 1269 chr3L 11105291 11105298 chr3L 11107007 11107029 X-element 4 1723 8.0 1.0 4.5 0.7 1738 chr3L 11105291 intergenic not near genes chr3L 11106160 intergenic not near genes chr3L 11107029 exon CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-461 1270 chr3L 11131792 11131818 chr3L 11132071 11132089 7 281 7.5 3.0 5.2 1.1 297 chr3L 11131792 intron CG42575 + chr3L 11131940 intron,3` UTR CG42575 +,CG32074 - chr3L 11132089 intron,exon CG42575 +,CG32074 - chr3L_7_11130001 chr3L_11130001 RAL-461 1271 chr3L 11135508 11135800 chr3L 11135758 11135905 13 144 1.0 1.5 1.2 5.9 397 chr3L 11135508 intergenic CG14143 + chr3L 11135706 intergenic CG14143 +,CG32082 + chr3L 11135905 intergenic CG32082 +,CG14143 + chr3L_13_11135001 chr3L_11135001 RAL-461 1272 chr3L 11152098 11152116 chr3L 11152200 11152218 4 98 4.5 4.0 4.2 0.8 120 chr3L 11152098 intron CG32082 + chr3L 11152158 intron CG32082 + chr3L 11152218 intron CG32082 + chr3L_4_11150001 chr3L_11150001 RAL-461 1273 chr3L 11239226 11239241 chr3L 11239356 11239371 8 129 5.0 8.0 6.5 1.1 145 chr3L 11239226 intergenic not near genes chr3L 11239298 intergenic not near genes chr3L 11239371 intergenic not near genes chr3L_8_11235001 chr3L_11235001 RAL-461 1274 chr3L 11290605 11290655 chr3L 11290948 11290981 13 340 5.5 2.5 4.0 2.6 376 chr3L 11290605 intron CG6175 - chr3L 11290793 intron CG6175 - chr3L 11290981 intron CG6175 - chr3L_13_11290001 chr3L_11290001 RAL-461 1275 chr3L 11299639 11299689 chr3L 11299736 11299786 15 97 3.5 4.0 3.8 3.1 147 chr3L 11299639 intergenic not near genes chr3L 11299712 intergenic not near genes chr3L 11299786 intergenic not near genes chr3L_15_11295001 chr3L_11295001 RAL-461 1276 chr3L 11432885 11432937 chr3L 11432984 11433036 13 96 0.0 2.0 1.0 6.5 151 chr3L 11432885 intergenic not near genes chr3L 11432960 intergenic not near genes chr3L 11433036 intergenic not near genes chr3L_13_11430001 chr3L_11430001 RAL-461 1277 chr3L 11435541 11435551 chr3L 11435730 11435740 5 189 7.5 1.5 4.5 0.9 199 chr3L 11435541 intergenic CG6149 -,CR44548 + chr3L 11435640 intergenic CR44548 +,CG6149 - chr3L 11435740 5` UTR CR44548 + chr3L_5_11435001 chr3L_11435001 RAL-461 1278 chr3L 11435555 11435591 chr3L 11435729 11435780 9 186 3.5 1.5 2.5 2.6 225 chr3L 11435555 intergenic CG6149 -,CR44548 + chr3L 11435668 5` UTR CR44548 + chr3L 11435780 5` UTR CR44548 + chr3L_9_11435001 chr3L_11435001 RAL-461 1279 chr3L 11456888 11456905 chr3L 11457006 11457024 4 118 1.0 4.5 2.8 1.1 136 chr3L 11456888 intergenic CG12289 - chr3L 11456956 intergenic CG12289 - chr3L 11457024 intergenic CG12289 - chr3L_4_11455001 chr3L_11455001 RAL-461 1280 chr3L 11488880 11488920 chr3L 11489014 11489054 12 128 3.5 3.5 3.5 2.7 174 chr3L 11488880 intron chrb + chr3L 11488967 intron chrb + chr3L 11489054 intron chrb + chr3L_12_11485001 chr3L_11485001 RAL-461 1281 chr3L 11579545 11579585 chr3L 11579661 11579711 11 122 3.0 5.0 4.0 2.2 166 chr3L 11579545 intergenic CG43390 - chr3L 11579628 intergenic CG43390 - chr3L 11579711 intergenic CG43390 - chr3L_11_11575001 chr3L_11575001 RAL-461 1282 chr3L 11663733 11663754 chr3L 11663878 11663899 5 141 2.0 0.0 1.0 2.5 166 chr3L 11663733 intron CG32085 - chr3L 11663816 intron CG32085 - chr3L 11663899 intron CG32085 - chr3L_5_11660001 chr3L_11660001 RAL-461 1283 chr3L 11678083 11678108 chr3L 11678190 11678215 9 105 6.0 4.5 5.2 1.5 132 chr3L 11678083 intron CG32085 - chr3L 11678149 intron CG32085 - chr3L 11678215 intron CG32085 - chr3L_9_11675001 chr3L_11675001 RAL-461 1284 chr3L 11678109 11678123 chr3L 11678184 11678230 6 95 3.5 4.5 4.0 1.2 121 chr3L 11678109 intron CG32085 - chr3L 11678170 intron CG32085 - chr3L 11678230 intron CG32085 - chr3L_6_11675001 chr3L_11675001 RAL-461 1285 chr3L 11723069 11723118 chr3L 11727884 11727903 Doc 16 4810 2.0 7.0 4.5 2.9 4834 chr3L 11723069 3` UTR Bmcp + chr3L 11725486 intron Bmcp + chr3L 11727903 3` UTR Bmcp + chr3L_16_11725001 chr3L_11725001 RAL-461 1286 chr3L 11744006 11744046 chr3L 11744119 11744174 10 121 3.0 3.0 3.0 2.5 168 chr3L 11744006 exon CG6024 - chr3L 11744090 intron CG6024 - chr3L 11744174 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-461 1287 chr3L 11746655 11746681 chr3L 11746754 11746755 4 90 0.0 8.0 4.0 0.8 100 chr3L 11746655 intron CG6024 - chr3L 11746705 intron CG6024 - chr3L 11746755 intron CG6024 - chr3L_4_11745001 chr3L_11745001 RAL-461 1288 chr3L 7749470 7749471 chr3L 11777678 11777678 7 4028207 18.5 5.0 11.8 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_9760001 chr3L_9760001 RAL-461 1289 chr3L 9313026 9313027 chr3L 11777678 11777678 6 2464651 6.5 5.0 5.8 0.9 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_10545001 chr3L_10545001 RAL-461 1290 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 7.0 12.5 9.8 0.4 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-461 1291 chr3L 11780518 11780570 chr3L 11780623 11780675 21 105 7.5 6.5 7.0 2.6 157 chr3L 11780518 intron Pi3K68D - chr3L 11780596 intron Pi3K68D - chr3L 11780675 intron Pi3K68D - chr3L_21_11780001 chr3L_11780001 RAL-461 1292 chr3L 11811439 11811477 chr3L 11811537 11811550 15 94 3.5 4.0 3.8 3.1 111 chr3L 11811439 intron CG42255 - chr3L 11811494 intron CG42255 - chr3L 11811550 exon CG42255 - chr3L_15_11810001 chr3L_11810001 RAL-461 1293 chr3L 11849322 11849353 chr3L 11849442 11849457 10 118 1.5 8.0 4.8 1.7 135 chr3L 11849322 intergenic not near genes chr3L 11849390 intergenic not near genes chr3L 11849457 intergenic not near genes chr3L_10_11845001 chr3L_11845001 RAL-461 1294 chr3L 11864532 11864583 chr3L 11865847 11865884 pogo 15 1305 2.0 6.0 4.0 3.0 1352 chr3L 11864532 intron CG44837 - chr3L 11865208 intron CG44837 - chr3L 11865884 intron CG44837 - chr3L_15_11865001 chr3L_11865001 RAL-461 1295 chr3L 11915981 11915985 chr3L 11916048 11916087 4 93 3.5 0.0 1.8 1.4 106 chr3L 11915981 intron CG44837 - chr3L 11916034 intron CG44837 - chr3L 11916087 intron CG44837 - chr3L_4_11915001 chr3L_11915001 RAL-461 1296 chr3L 12013893 12013937 chr3L 12014004 12014047 13 110 2.5 2.0 2.2 4.1 154 chr3L 12013893 intron rols - chr3L 12013970 intron rols - chr3L 12014047 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-461 1297 chr3L 12075416 12075459 chr3L 12075525 12075563 7 107 5.0 0.5 2.8 1.8 147 chr3L 12075416 intron Sema-5c - chr3L 12075490 intron Sema-5c - chr3L 12075563 intron Sema-5c - chr3L_7_12075001 chr3L_12075001 RAL-461 1298 chr3L 12092381 12092401 chr3L 12092478 12092498 7 96 2.0 6.0 4.0 1.4 117 chr3L 12092381 intergenic not near genes chr3L 12092440 intergenic not near genes chr3L 12092498 intergenic not near genes chr3L_7_12090001 chr3L_12090001 RAL-461 1299 chr3L 12113663 12113711 chr3L 12113772 12113805 5 105 1.0 2.5 1.8 1.8 142 chr3L 12113663 intergenic not near genes chr3L 12113734 intergenic not near genes chr3L 12113805 intergenic not near genes chr3L_5_12110001 chr3L_12110001 RAL-461 1300 chr3L 12119756 12119789 chr3L 12119873 12119906 13 115 6.5 9.0 7.8 1.5 150 chr3L 12119756 3` UTR ssp + chr3L 12119831 intergenic ssp +,CG11560 + chr3L 12119906 intergenic CG11560 +,ssp + chr3L_13_12115001 chr3L_12115001 RAL-461 1301 chr3L 12158488 12158523 chr3L 12158719 12158764 7 238 19.0 12.5 15.8 0.4 276 chr3L 12158488 intron CG9760 - chr3L 12158626 intron CG9760 - chr3L 12158764 intron CG9760 - chr3L_7_12155001 chr3L_12155001 RAL-461 1302 chr3L 12170777 12170822 chr3L 12170878 12170924 13 100 3.5 6.5 5.0 2.2 147 chr3L 12170777 intron Rh7 - chr3L 12170850 intron Rh7 - chr3L 12170924 intron Rh7 - chr3L_13_12170001 chr3L_12170001 RAL-461 1303 chr3L 12304093 12304112 chr3L 12304189 12304197 5 93 3.0 7.5 5.2 0.8 104 chr3L 12304093 intergenic not near genes chr3L 12304145 intergenic not near genes chr3L 12304197 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-461 1304 chr3L 12314773 12314788 chr3L 12314947 12314967 4 178 3.0 1.5 2.2 1.2 194 chr3L 12314773 intergenic not near genes chr3L 12314870 intergenic not near genes chr3L 12314967 intergenic not near genes chr3L_4_12310001 chr3L_12310001 RAL-461 1305 chr3L 12317407 12317426 chr3L 12317528 12317547 4 121 11.0 3.0 7.0 0.5 140 chr3L 12317407 intergenic not near genes chr3L 12317477 intergenic not near genes chr3L 12317547 intergenic not near genes chr3L_4_12315001 chr3L_12315001 RAL-461 1306 chr3L 12327113 12327148 chr3L 12327247 12327256 5 127 3.5 2.5 3.0 1.2 143 chr3L 12327113 intergenic not near genes chr3L 12327184 intergenic not near genes chr3L 12327256 intergenic not near genes chr3L_5_12325001 chr3L_12325001 RAL-461 1307 chr3L 12378584 12378600 chr3L 12378741 12378789 6 171 2.5 3.5 3.0 1.5 205 chr3L 12378584 intron Ncc69 - chr3L 12378686 intron Ncc69 - chr3L 12378789 intron Ncc69 - chr3L_6_12375001 chr3L_12375001 RAL-461 1308 chr3L 12412901 12412917 chr3L 12413003 12413008 5 100 3.5 2.5 3.0 1.2 107 chr3L 12412901 intron CG32103 - chr3L 12412954 intron CG32103 - chr3L 12413008 intron CG32103 - chr3L_5_12410001 chr3L_12410001 RAL-461 1309 chr3L 12460068 12460344 chr3L 12460170 12460439 14 93 0.0 0.0 0.0 14.0 371 chr3L 12460068 intergenic not near genes chr3L 12460254 intergenic not near genes chr3L 12460439 intergenic not near genes chr3L_14_12460001 chr3L_12460001 RAL-461 1310 chr3L 12501661 12501699 chr3L 12501762 12501806 8 104 3.5 1.5 2.5 2.3 145 chr3L 12501661 5` UTR CG10681 + chr3L 12501734 intron CG10681 + chr3L 12501806 exon CG10681 + chr3L_8_12500001 chr3L_12500001 RAL-461 1311 chr3L 12563987 12564013 chr3L 12564223 12564249 12 235 3.0 2.0 2.5 3.4 262 chr3L 12563987 intron sowah - chr3L 12564118 intron sowah - chr3L 12564249 intron sowah - chr3L_12_12560001 chr3L_12560001 RAL-461 1312 chr3L 12578038 12578073 chr3L 12578138 12578181 5 106 0.5 0.0 0.2 4.2 143 chr3L 12578038 intergenic not near genes chr3L 12578110 intergenic not near genes chr3L 12578181 intergenic not near genes chr3L_5_12575001 chr3L_12575001 RAL-461 1313 chr3L 12614587 12614599 chr3L 12614740 12614757 4 157 0.0 3.5 1.8 1.4 170 chr3L 12614587 intron caup + chr3L 12614672 intron caup + chr3L 12614757 intron caup + chr3L_4_12610001 chr3L_12610001 RAL-461 1314 chr3L 12626137 12626152 chr3L 12626266 12626281 4 129 0.0 3.0 1.5 1.6 144 chr3L 12626137 intergenic not near genes chr3L 12626209 intergenic not near genes chr3L 12626281 intergenic not near genes chr3L_4_12625001 chr3L_12625001 RAL-461 1315 chr3L 12666905 12666949 chr3L 12667037 12667066 17 127 5.0 0.5 2.8 4.5 161 chr3L 12666905 intergenic not near genes chr3L 12666986 intergenic not near genes chr3L 12667066 intergenic not near genes chr3L_17_12665001 chr3L_12665001 RAL-461 1316 chr3L 12677207 12677255 chr3L 12677326 12677334 15 112 3.5 10.5 7.0 1.9 127 chr3L 12677207 intergenic not near genes chr3L 12677270 intergenic not near genes chr3L 12677334 intergenic not near genes chr3L_15_12675001 chr3L_12675001 RAL-461 1317 chr3L 12728029 12728044 chr3L 12728133 12728138 10 102 4.0 8.5 6.2 1.4 109 chr3L 12728029 intergenic not near genes chr3L 12728084 intergenic not near genes chr3L 12728138 intergenic not near genes chr3L_10_12725001 chr3L_12725001 RAL-461 1318 chr3L 12801974 12802005 chr3L 12802059 12802091 8 86 3.5 3.5 3.5 1.8 117 chr3L 12801974 intron Atg1 - chr3L 12802032 intron Atg1 - chr3L 12802091 intron Atg1 - chr3L_8_12800001 chr3L_12800001 RAL-461 1319 chr3L 12874906 12874952 chr3L 12877218 12877263 jockey 8 2309 3.0 3.0 3.0 2.0 2357 chr3L 12874906 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877263 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-461 1320 chr3L 12894784 12894801 chr3L 12894882 12894899 5 98 7.0 3.0 5.0 0.8 115 chr3L 12894784 intergenic CG14118 + chr3L 12894842 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-461 1321 chr3L 12901309 12901355 chr3L 12901407 12901450 13 95 0.5 5.0 2.8 3.4 141 chr3L 12901309 3` UTR CG12520 - chr3L 12901380 exon CG12520 - chr3L 12901450 exon CG12520 - chr3L_13_12900001 chr3L_12900001 RAL-461 1322 chr3L 12919276 12919284 chr3L 12924747 12924748 Rt1c 4 5476 6.5 5.0 5.8 0.6 5472 chr3L 12919276 intergenic not near genes chr3L 12922012 intergenic not near genes chr3L 12924748 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-461 1323 chr3L 12977438 12977443 chr3L 12977535 12977535 4 96 13.0 2.5 7.8 0.5 97 chr3L 12977438 intergenic not near genes chr3L 12977486 intergenic not near genes chr3L 12977535 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-461 1324 chr3L 12977447 12977490 chr3L 12977534 12977587 18 95 4.5 2.0 3.2 4.3 140 chr3L 12977447 intergenic not near genes chr3L 12977517 intergenic not near genes chr3L 12977587 intergenic not near genes chr3L_18_12975001 chr3L_12975001 RAL-461 1325 chr3L 12987350 12987381 chr3L 12987452 12987483 5 100 0.0 0.5 0.2 4.2 133 chr3L 12987350 intergenic not near genes chr3L 12987416 intergenic not near genes chr3L 12987483 intergenic not near genes chr3L_5_12985001 chr3L_12985001 RAL-461 1326 chr3L 13008780 13008825 chr3L 13008952 13008972 4 161 3.0 3.0 3.0 1.0 192 chr3L 13008780 exon CG14117 + chr3L 13008876 intron CG14117 + chr3L 13008972 exon CG14117 + chr3L_4_13005001 chr3L_13005001 RAL-461 1327 chr3L 13017899 13017918 chr3L 13018001 13018020 5 99 1.5 5.5 3.5 1.1 121 chr3L 13017899 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017960 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018020 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_5_13015001 chr3L_13015001 RAL-461 1328 chr3L 13069540 13069587 chr3L 13069639 13069670 14 96 4.5 4.0 4.2 2.7 130 chr3L 13069540 intergenic not near genes chr3L 13069605 intergenic not near genes chr3L 13069670 intergenic not near genes chr3L_14_13065001 chr3L_13065001 RAL-461 1329 chr3L 13085044 13085077 chr3L 13085143 13085176 7 95 5.5 4.0 4.8 1.2 132 chr3L 13085044 intergenic not near genes chr3L 13085110 intergenic not near genes chr3L 13085176 intergenic not near genes chr3L_7_13085001 chr3L_13085001 RAL-461 1330 chr3L 13098704 13098750 chr3L 13098855 13098881 9 148 3.5 2.5 3.0 2.2 177 chr3L 13098704 intergenic not near genes chr3L 13098792 intergenic not near genes chr3L 13098881 intergenic not near genes chr3L_9_13095001 chr3L_13095001 RAL-461 1331 chr3L 13144110 13144150 chr3L 13144197 13144222 17 92 4.0 4.5 4.2 3.3 112 chr3L 13144110 intergenic not near genes chr3L 13144166 intergenic not near genes chr3L 13144222 intergenic not near genes chr3L_17_13140001 chr3L_13140001 RAL-461 1332 chr3L 13194051 13194099 chr3L 13194148 13194193 7 92 1.5 3.5 2.5 2.0 142 chr3L 13194051 intergenic not near genes chr3L 13194122 intergenic not near genes chr3L 13194193 intergenic not near genes chr3L_7_13190001 chr3L_13190001 RAL-461 1333 chr3L 13223218 13223242 chr3L 13223315 13223339 4 96 3.5 9.5 6.5 0.5 121 chr3L 13223218 intergenic not near genes chr3L 13223278 intergenic not near genes chr3L 13223339 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-461 1334 chr3L 13315836 13315856 chr3L 13315943 13315963 7 107 6.5 4.5 5.5 1.1 127 chr3L 13315836 intergenic not near genes chr3L 13315900 intergenic not near genes chr3L 13315963 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-461 1335 chr3L 13338619 13338659 chr3L 13338711 13338756 13 96 4.0 3.0 3.5 2.9 137 chr3L 13338619 intergenic not near genes chr3L 13338688 intergenic not near genes chr3L 13338756 intergenic not near genes chr3L_13_13335001 chr3L_13335001 RAL-461 1336 chr3L 13525139 13525160 chr3L 13532955 13532976 roo 7 7816 7.5 3.5 5.5 1.1 7837 chr3L 13525139 intergenic not near genes chr3L 13529058 intergenic not near genes chr3L 13532976 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-461 1337 chr3L 13525163 13525186 chr3L 13532954 13532997 roo 8 7798 5.0 3.0 4.0 1.6 7834 chr3L 13525163 intergenic not near genes chr3L 13529080 intergenic not near genes chr3L 13532997 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-461 1338 chr3L 13629515 13629533 chr3L 13629640 13629656 4 128 3.5 5.5 4.5 0.7 141 chr3L 13629515 intron bru-3 - chr3L 13629586 intron bru-3 - chr3L 13629656 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-461 1339 chr3L 13669864 13669905 chr3L 13670179 13670225 4 311 3.5 5.0 4.2 0.8 361 chr3L 13669864 intron bru-3 - chr3L 13670044 intron bru-3 - chr3L 13670225 intron bru-3 - chr3L_4_13670001 chr3L_13670001 RAL-461 1340 chr3L 13701557 13701585 chr3L 13701681 13701708 5 130 3.0 6.0 4.5 0.9 151 chr3L 13701557 intron bru-3 - chr3L 13701632 intron bru-3 - chr3L 13701708 intron bru-3 - chr3L_5_13700001 chr3L_13700001 RAL-461 1341 chr3L 13740013 13740050 chr3L 13740125 13740152 6 110 1.0 5.0 3.0 1.5 139 chr3L 13740013 intron bru-3 - chr3L 13740082 intron bru-3 - chr3L 13740152 intron bru-3 - chr3L_6_13740001 chr3L_13740001 RAL-461 1342 chr3L 13804536 13804576 chr3L 13822842 13822862 roo 7 18299 4.0 5.5 4.8 1.2 18326 chr3L 13804536 intergenic not near genes chr3L 13813699 intergenic not near genes chr3L 13822862 intergenic not near genes chr3L_7_13810001 chr3L_13810001 RAL-461 1343 chr3L 13903525 13903569 chr3L 13904131 13904177 7 602 1.5 3.0 2.2 2.2 652 chr3L 13903525 intergenic dysc - chr3L 13903851 intergenic not near genes chr3L 13904177 intergenic not near genes chr3L_7_13900001 chr3L_13900001 RAL-461 1344 chr3L 13936454 13936653 chr3L 13936554 13936796 12 126 1.5 3.0 2.2 3.8 342 chr3L 13936454 intergenic not near genes chr3L 13936625 intergenic not near genes chr3L 13936796 intergenic not near genes chr3L_12_13935001 chr3L_13935001 RAL-461 1345 chr3L 14126305 14126357 chr3L 14126515 14126567 16 202 4.0 5.0 4.5 2.9 262 chr3L 14126305 intron Sox21b - chr3L 14126436 intron Sox21b - chr3L 14126567 intron Sox21b - chr3L_16_14125001 chr3L_14125001 RAL-461 1346 chr3L 14129473 14129512 chr3L 14129565 14129614 7 86 2.0 4.5 3.2 1.7 141 chr3L 14129473 intron Sox21b - chr3L 14129544 intron Sox21b - chr3L 14129614 intron Sox21b - chr3L_7_14125001 chr3L_14125001 RAL-461 1347 chr3L 14175355 14175368 chr3L 14175508 14175536 11 165 4.0 4.5 4.2 2.1 181 chr3L 14175355 intergenic D - chr3L 14175446 intergenic D - chr3L 14175536 intergenic D - chr3L_11_14175001 chr3L_14175001 RAL-461 1348 chr3L 14194703 14194742 chr3L 14194799 14194827 13 94 7.0 3.5 5.2 2.1 124 chr3L 14194703 intron nuf + chr3L 14194765 intron nuf + chr3L 14194827 intron nuf + chr3L_13_14190001 chr3L_14190001 RAL-461 1349 chr3L 14236049 14236073 chr3L 14236206 14236209 8 152 4.0 5.5 4.8 1.4 160 chr3L 14236049 intergenic CG34244 - chr3L 14236129 intergenic CG34244 - chr3L 14236209 intergenic CG34244 -,CG7906 + chr3L_8_14235001 chr3L_14235001 RAL-461 1350 chr3L 14257357 14257394 chr3L 14257463 14257499 4 105 1.0 2.0 1.5 1.6 142 chr3L 14257357 intergenic not near genes chr3L 14257428 intergenic not near genes chr3L 14257499 intergenic not near genes chr3L_4_14255001 chr3L_14255001 RAL-461 1351 chr3L 14282577 14282588 chr3L 14282672 14282685 4 98 7.5 1.5 4.5 0.7 108 chr3L 14282577 intron fz + chr3L 14282631 intron fz + chr3L 14282685 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-461 1352 chr3L 14295964 14296008 chr3L 14296466 14296513 roo 8 504 2.0 3.5 2.8 2.1 549 chr3L 14295964 intron fz + chr3L 14296238 intron fz + chr3L 14296513 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-461 1353 chr3L 14356505 14356550 chr3L 14356605 14356650 18 94 3.0 4.5 3.8 3.8 145 chr3L 14356505 intron fz + chr3L 14356578 intron fz + chr3L 14356650 intron fz + chr3L_18_14355001 chr3L_14355001 RAL-461 1354 chr3L 14462896 14462911 chr3L 14462976 14462994 7 99 0.0 1.0 0.5 4.7 98 chr3L 14462896 intron bbg - chr3L 14462945 intron bbg - chr3L 14462994 intron bbg - chr3L_7_14460001 chr3L_14460001 RAL-461 1355 chr3L 14468428 14468476 chr3L 14473654 14473702 copia 9 5224 5.0 2.0 3.5 2.0 5274 chr3L 14468428 intron bbg - chr3L 14471065 intron bbg - chr3L 14473702 intron bbg - chr3L_9_14470001 chr3L_14470001 RAL-461 1356 chr3L 14486006 14486049 chr3L 14486097 14486111 7 87 1.0 8.0 4.5 1.3 105 chr3L 14486006 intron bbg - chr3L 14486058 intron bbg - chr3L 14486111 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-461 1357 chr3L 14522081 14522121 chr3L 14522200 14522240 9 119 3.0 3.5 3.2 2.1 159 chr3L 14522081 intron bbg - chr3L 14522160 intron bbg - chr3L 14522240 intron bbg - chr3L_9_14520001 chr3L_14520001 RAL-461 1358 chr3L 14565724 14565776 chr3L 14565835 14565887 26 107 4.0 4.0 4.0 5.2 163 chr3L 14565724 intergenic not near genes chr3L 14565806 intergenic not near genes chr3L 14565887 intergenic not near genes chr3L_26_14565001 chr3L_14565001 RAL-461 1359 chr3L 14652620 14652669 chr3L 14652719 14652768 11 93 4.0 6.0 5.0 1.8 148 chr3L 14652620 intron dlp + chr3L 14652694 intron dlp + chr3L 14652768 intron dlp + chr3L_11_14650001 chr3L_14650001 RAL-461 1360 chr3L 14684607 14684639 chr3L 14684719 14684735 10 106 3.5 5.0 4.2 1.9 128 chr3L 14684607 intron ome + chr3L 14684671 intron ome + chr3L 14684735 intron ome + chr3L_10_14680001 chr3L_14680001 RAL-461 1361 chr3L 14870041 14870078 chr3L 14870135 14870174 9 95 3.5 2.5 3.0 2.2 133 chr3L 14870041 intron CG17839 + chr3L 14870108 intron CG17839 + chr3L 14870174 intron CG17839 + chr3L_9_14870001 chr3L_14870001 RAL-461 1362 chr3L 14893647 14893687 chr3L 14893746 14893782 8 98 3.0 2.0 2.5 2.3 135 chr3L 14893647 intergenic CG34245 - chr3L 14893714 intergenic CG34245 - chr3L 14893782 3` UTR CG34245 - chr3L_8_14890001 chr3L_14890001 RAL-461 1363 chr3L 14913882 14913933 chr3L 14913979 14914007 9 86 2.0 2.5 2.2 2.8 125 chr3L 14913882 intron DCX-EMAP + chr3L 14913944 intron DCX-EMAP + chr3L 14914007 intron DCX-EMAP + chr3L_9_14910001 chr3L_14910001 RAL-461 1364 chr3L 14933427 14933458 chr3L 14933529 14933559 6 102 3.0 4.5 3.8 1.2 132 chr3L 14933427 intron DCX-EMAP + chr3L 14933493 intron DCX-EMAP + chr3L 14933559 intron DCX-EMAP + chr3L_6_14930001 chr3L_14930001 RAL-461 1365 chr3L 14970742 14970765 chr3L 14971072 14971095 F-element 7 330 8.0 4.5 6.2 1.0 353 chr3L 14970742 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971095 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-461 1366 chr3L 14973640 14973650 chr3L 14973727 14973728 4 91 3.0 5.5 4.2 0.8 88 chr3L 14973640 intergenic Brd + chr3L 14973684 intergenic Brd + chr3L 14973728 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-461 1367 chr3L 15028776 15028825 chr3L 15028957 15029000 16 178 3.5 3.5 3.5 3.6 224 chr3L 15028776 intron Sytbeta - chr3L 15028888 intron Sytbeta - chr3L 15029000 intron Sytbeta - chr3L_16_15025001 chr3L_15025001 RAL-461 1368 chr3L 15048115 15048163 chr3L 15048459 15048507 13 345 33.5 29.5 31.5 0.4 392 chr3L 15048115 intron Sytbeta - chr3L 15048311 intron Sytbeta - chr3L 15048507 intron Sytbeta - chr3L_13_15045001 chr3L_15045001 RAL-461 1369 chr3L 15085028 15085080 chr3L 15086214 15086266 1360 7 1179 2.5 3.0 2.8 1.8 1238 chr3L 15085028 intron cp309 - chr3L 15085647 intron cp309 - chr3L 15086266 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-461 1370 chr3L 15094951 15094963 chr3L 15095067 15095074 5 113 4.5 3.0 3.8 1.0 123 chr3L 15094951 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095012 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095074 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_5_15095001 chr3L_15095001 RAL-461 1371 chr3L 15165027 15165035 chr3L 15165146 15165154 4 119 1.5 0.0 0.8 2.2 127 chr3L 15165027 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165154 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-461 1372 chr3L 15217105 15217137 chr3L 15217221 15217273 8 127 2.0 4.0 3.0 2.0 168 chr3L 15217105 intergenic not near genes chr3L 15217189 intergenic not near genes chr3L 15217273 intergenic not near genes chr3L_8_15215001 chr3L_15215001 RAL-461 1373 chr3L 15295760 15295786 chr3L 15298623 15298649 gypsy5 10 2861 7.0 7.5 7.2 1.2 2889 chr3L 15295760 intergenic not near genes chr3L 15297204 intergenic not near genes chr3L 15298649 intergenic Best4 + chr3L_10_15295001 chr3L_15295001 RAL-461 1374 chr3L 15406003 15406045 chr3L 15406105 15406111 4 92 6.0 6.5 6.2 0.6 108 chr3L 15406003 intergenic not near genes chr3L 15406057 intergenic not near genes chr3L 15406111 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-461 1375 chr3L 15423744 15423773 chr3L 15426607 15426618 opus 6 2859 7.5 4.0 5.8 0.9 2874 chr3L 15423744 intergenic not near genes chr3L 15425181 intergenic not near genes chr3L 15426618 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-461 1376 chr3L 15443577 15443610 chr3L 15443663 15443669 7 87 2.5 4.0 3.2 1.7 92 chr3L 15443577 intergenic not near genes chr3L 15443623 intergenic not near genes chr3L 15443669 intergenic not near genes chr3L_7_15440001 chr3L_15440001 RAL-461 1377 chr3L 15461901 15461921 chr3L 15461973 15461973 4 64 1.0 1.0 1.0 2.0 72 chr3L 15461901 intergenic not near genes chr3L 15461937 intergenic not near genes chr3L 15461973 intergenic not near genes chr3L_4_15460001 chr3L_15460001 RAL-461 1378 chr3L 15466032 15466139 chr3L 15466134 15466250 8 112 0.0 0.0 0.0 8.0 218 chr3L 15466032 intergenic not near genes chr3L 15466141 intergenic not near genes chr3L 15466250 intergenic not near genes chr3L_8_15465001 chr3L_15465001 RAL-461 1379 chr3L 15541611 15541652 chr3L 15541712 15541763 13 108 3.5 2.5 3.0 3.2 152 chr3L 15541611 intron CrebA + chr3L 15541687 intron CrebA + chr3L 15541763 intron CrebA + chr3L_13_15540001 chr3L_15540001 RAL-461 1380 chr3L 15600148 15600197 chr3L 15600253 15600318 7 113 7.0 0.0 3.5 1.6 170 chr3L 15600148 intron RhoGAP71E + chr3L 15600233 intron RhoGAP71E + chr3L 15600318 intron RhoGAP71E + chr3L_7_15600001 chr3L_15600001 RAL-461 1381 chr3L 15768991 15769009 chr3L 15769117 15769120 4 125 2.0 0.0 1.0 2.0 129 chr3L 15768991 intergenic not near genes chr3L 15769056 intergenic not near genes chr3L 15769120 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-461 1382 chr3L 15778501 15778550 chr3L 15778672 15778721 9 171 3.0 2.0 2.5 2.6 220 chr3L 15778501 intergenic not near genes chr3L 15778611 intergenic not near genes chr3L 15778721 intergenic not near genes chr3L_9_15775001 chr3L_15775001 RAL-461 1383 chr3L 15883178 15883209 chr3L 15883485 15883518 6 311 7.0 1.5 4.2 1.2 340 chr3L 15883178 intron pHCl - chr3L 15883348 intron pHCl - chr3L 15883518 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-461 1384 chr3L 16182054 16182094 chr3L 16182194 16182234 9 131 0.5 3.5 2.0 3.0 180 chr3L 16182054 intergenic not near genes chr3L 16182144 intergenic not near genes chr3L 16182234 intergenic not near genes chr3L_9_16180001 chr3L_16180001 RAL-461 1385 chr3L 16184089 16184135 chr3L 16188927 16188959 X-element 14 4834 3.0 3.5 3.2 3.3 4870 chr3L 16184089 intergenic not near genes chr3L 16186524 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_14_16185001 chr3L_16185001 RAL-461 1386 chr3L 16212790 16212839 chr3L 16212901 16212940 15 106 7.5 1.0 4.2 2.9 150 chr3L 16212790 intergenic CG13073 - chr3L 16212865 intergenic CG13073 - chr3L 16212940 intergenic CG13073 - chr3L_15_16210001 chr3L_16210001 RAL-461 1387 chr3L 16236323 16236369 chr3L 16236458 16236468 14 131 2.0 7.5 4.8 2.4 145 chr3L 16236323 3` UTR l(3)72Dp + chr3L 16236396 3` UTR l(3)72Dp + chr3L 16236468 3` UTR l(3)72Dp + chr3L_14_16235001 chr3L_16235001 RAL-461 1388 chr3L 16286423 16286472 chr3L 16286803 16286852 16 378 3.0 3.5 3.2 3.8 429 chr3L 16286423 intergenic not near genes chr3L 16286638 intergenic not near genes chr3L 16286852 intergenic not near genes chr3L_16_16285001 chr3L_16285001 RAL-461 1389 chr3L 16437049 16437102 chr3L 16437148 16437208 9 104 3.5 0.0 1.8 3.2 159 chr3L 16437049 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437208 intron,intron CG33158 +,dsx-c73A - chr3L_9_16435001 chr3L_16435001 RAL-461 1390 chr3L 16443828 16443876 chr3L 16446188 16446231 Doc 12 2357 4.0 4.0 4.0 2.4 2403 chr3L 16443828 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446231 intron,intron CG33158 +,dsx-c73A - chr3L_12_16445001 chr3L_16445001 RAL-461 1391 chr3L 16462711 16462737 chr3L 16462825 16462851 4 114 5.0 2.0 3.5 0.9 140 chr3L 16462711 intron CG33158 + chr3L 16462781 intron CG33158 + chr3L 16462851 intron CG33158 + chr3L_4_16460001 chr3L_16460001 RAL-461 1392 chr3L 16493959 16494013 chr3L 16494496 16494529 jockey 7 529 3.0 5.0 4.0 1.4 570 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-461 1393 chr3L 16533574 16533587 chr3L 16533696 16533718 6 129 3.5 4.5 4.0 1.2 144 chr3L 16533574 intron CG43373 - chr3L 16533646 intron CG43373 - chr3L 16533718 intron CG43373 - chr3L_6_16530001 chr3L_16530001 RAL-461 1394 chr3L 16540033 16540083 chr3L 16540141 16540161 15 101 6.0 1.5 3.8 3.1 128 chr3L 16540033 intron CG43373 - chr3L 16540097 intron CG43373 - chr3L 16540161 intron CG43373 - chr3L_15_16540001 chr3L_16540001 RAL-461 1395 chr3L 16616498 16616529 chr3L 16621836 16621855 297 10 5333 6.5 3.5 5.0 1.7 5357 chr3L 16616498 3` UTR Abl - chr3L 16619176 3` UTR Abl - chr3L 16621855 3` UTR Abl - chr3L_10_16615001 chr3L_16615001 RAL-461 1396 chr3L 16681848 16681876 chr3L 16681959 16681987 11 107 3.0 6.0 4.5 2.0 139 chr3L 16681848 intron,intron Lasp -,CG43954 - chr3L 16681918 intron,intron Lasp -,CG43954 - chr3L 16681987 intron,intron Lasp -,CG43954 - chr3L_11_16680001 chr3L_16680001 RAL-461 1397 chr3L 16684000 16684043 chr3L 16689241 16689274 copia 6 5239 3.5 3.5 3.5 1.3 5274 chr3L 16684000 intron,intron Lasp -,CG43954 - chr3L 16686637 intron,intron Lasp -,CG43954 - chr3L 16689274 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_6_16685001 chr3L_16685001 RAL-461 1398 chr3L 16717320 16717360 chr3L 16726288 16726327 9 8970 37.0 16.5 26.8 0.3 9007 chr3L 16717320 intron Dab + chr3L 16721824 exon Dab + chr3L 16726327 intergenic CG13026 -,PGRP-SB2 + chr3L_9_16720001 chr3L_16720001 RAL-461 1399 chr3L 16772475 16772511 chr3L 16772585 16772621 10 108 6.0 6.5 6.2 1.4 146 chr3L 16772475 intron Nrt + chr3L 16772548 intron Nrt + chr3L 16772621 intron Nrt + chr3L_10_16770001 chr3L_16770001 RAL-461 1400 chr3L 16786973 16787004 chr3L 16787062 16787100 9 90 0.5 5.5 3.0 2.2 127 chr3L 16786973 intergenic Int6 - chr3L 16787036 intergenic Int6 - chr3L 16787100 intergenic Int6 -,CG9674 - chr3L_9_16785001 chr3L_16785001 RAL-461 1401 chr3L 16808022 16808050 chr3L 16808118 16808146 5 96 8.5 1.0 4.8 0.9 124 chr3L 16808022 intron nudC + chr3L 16808084 intron nudC + chr3L 16808146 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-461 1402 chr3L 16817862 16817895 chr3L 16818021 16818031 7 153 5.0 3.5 4.2 1.3 169 chr3L 16817862 intron,intron nudC +,CG13024 - chr3L 16817946 intron,intron nudC +,CG13024 - chr3L 16818031 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-461 1403 chr3L 16845017 16845034 chr3L 16845150 16845167 4 133 4.0 7.5 5.8 0.6 150 chr3L 16845017 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845167 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-461 1404 chr3L 16870852 16870896 chr3L 16870953 16871007 6 109 1.0 6.0 3.5 1.3 155 chr3L 16870852 intron Lmpt + chr3L 16870930 intron Lmpt + chr3L 16871007 intron Lmpt + chr3L_6_16870001 chr3L_16870001 RAL-461 1405 chr3L 16873322 16873361 chr3L 16873447 16873477 8 122 7.0 1.0 4.0 1.6 155 chr3L 16873322 intron Lmpt + chr3L 16873400 intron Lmpt + chr3L 16873477 intron Lmpt + chr3L_8_16870001 chr3L_16870001 RAL-461 1406 chr3L 16945716 16945761 chr3L 16954889 16954895 roo 10 9158 2.5 4.5 3.5 2.2 9179 chr3L 16945716 exon Obp73a + chr3L 16950306 intergenic not near genes chr3L 16954895 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-461 1407 chr3L 17034913 17034967 chr3L 17035121 17035175 G2 10 206 1.0 4.5 2.8 2.6 262 chr3L 17034913 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035175 intergenic beg + chr3L_10_17035001 chr3L_17035001 RAL-461 1408 chr3L 17084985 17085003 chr3L 17094154 17094172 roo 7 9168 13.5 5.5 9.5 0.7 9187 chr3L 17084985 intron Rbp6 - chr3L 17089578 intron Rbp6 - chr3L 17094172 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-461 1409 chr3L 17085004 17085030 chr3L 17094153 17094199 roo 10 9166 10.5 5.5 8.0 1.1 9195 chr3L 17085004 intron Rbp6 - chr3L 17089602 intron Rbp6 - chr3L 17094199 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-461 1410 chr3L 17120638 17120684 chr3L 17120728 17120780 11 91 4.5 3.0 3.8 2.3 142 chr3L 17120638 intron Rbp6 - chr3L 17120709 intron Rbp6 - chr3L 17120780 intron Rbp6 - chr3L_11_17120001 chr3L_17120001 RAL-461 1411 chr3L 17146957 17146986 chr3L 17147040 17147088 5 95 3.5 2.5 3.0 1.2 131 chr3L 17146957 intron Rbp6 - chr3L 17147022 intron Rbp6 - chr3L 17147088 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-461 1412 chr3L 17149154 17149173 chr3L 17149255 17149264 6 98 8.5 0.0 4.2 1.2 110 chr3L 17149154 intron Rbp6 - chr3L 17149209 intron Rbp6 - chr3L 17149264 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-461 1413 chr3L 17178304 17178327 chr3L 17178438 17178471 11 142 6.0 7.5 6.8 1.4 167 chr3L 17178304 intron Rbp6 - chr3L 17178388 intron Rbp6 - chr3L 17178471 intron Rbp6 - chr3L_11_17175001 chr3L_17175001 RAL-461 1414 chr3L 17331048 17331097 chr3L 17331158 17331206 7 107 2.5 1.0 1.8 2.5 158 chr3L 17331048 intergenic not near genes chr3L 17331127 intergenic not near genes chr3L 17331206 intergenic not near genes chr3L_7_17330001 chr3L_17330001 RAL-461 1415 chr3L 17408894 17408928 chr3L 17408990 17409024 14 95 6.5 6.0 6.2 1.9 130 chr3L 17408894 intron blot - chr3L 17408959 intron blot - chr3L 17409024 intron blot - chr3L_14_17405001 chr3L_17405001 RAL-461 1416 chr3L 17474892 17474937 chr3L 17474989 17475034 8 96 2.5 1.5 2.0 2.7 142 chr3L 17474892 intergenic CG7580 +,CG7589 + chr3L 17474963 intergenic CG7580 +,CG7589 + chr3L 17475034 intergenic CG7580 + chr3L_8_17470001 chr3L_17470001 RAL-461 1417 chr3L 17510728 17510759 chr3L 17510832 17510863 10 100 0.5 1.5 1.0 5.0 135 chr3L 17510728 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510863 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 RAL-461 1418 chr3L 17535793 17535844 chr3L 17535927 17535944 7 121 1.5 1.5 1.5 2.8 151 chr3L 17535793 intron Nedd4 + chr3L 17535868 intron Nedd4 + chr3L 17535944 intron Nedd4 + chr3L_7_17535001 chr3L_17535001 RAL-461 1419 chr3L 17665637 17665673 chr3L 17665724 17665757 6 81 1.5 3.0 2.2 1.9 120 chr3L 17665637 intron Crtc - chr3L 17665697 intron Crtc - chr3L 17665757 intron Crtc - chr3L_6_17665001 chr3L_17665001 RAL-461 1420 chr3L 17678885 17678899 chr3L 17678989 17679001 4 104 4.5 0.5 2.5 1.1 116 chr3L 17678885 intron CG34251 + chr3L 17678943 intron CG34251 + chr3L 17679001 intron CG34251 + chr3L_4_17675001 chr3L_17675001 RAL-461 1421 chr3L 17687851 17687892 chr3L 17687970 17688012 9 119 19.0 20.5 19.8 0.4 161 chr3L 17687851 intergenic not near genes chr3L 17687932 intergenic not near genes chr3L 17688012 intergenic not near genes chr3L_9_17685001 chr3L_17685001 RAL-461 1422 chr3L 17690835 17690883 chr3L 17690934 17690980 6 98 0.0 2.0 1.0 3.0 145 chr3L 17690835 intron Ccn + chr3L 17690908 intron Ccn + chr3L 17690980 intron Ccn + chr3L_6_17690001 chr3L_17690001 RAL-461 1423 chr3L 17730842 17730878 chr3L 17738182 17738228 mdg1 16 7346 3.5 4.0 3.8 3.3 7386 chr3L 17730842 intron Ccn + chr3L 17734535 intron Ccn + chr3L 17738228 intron Ccn + chr3L_16_17730001 chr3L_17730001 RAL-461 1424 chr3L 17787670 17787692 chr3L 17787777 17787805 11 112 11.0 8.0 9.5 1.0 135 chr3L 17787670 intergenic not near genes chr3L 17787738 intergenic not near genes chr3L 17787805 intergenic not near genes chr3L_11_17785001 chr3L_17785001 RAL-461 1425 chr3L 17784349 17784352 chr3L 17788935 17788943 4 4586 21.0 15.0 18.0 0.2 4594 chr3L 17784349 intergenic CR44668 - chr3L 17786646 intergenic not near genes chr3L 17788943 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-461 1426 chr3L 17784343 17784362 chr3L 17788954 17788965 4 4600 24.0 15.5 19.8 0.2 4622 chr3L 17784343 intergenic CR44668 - chr3L 17786654 intergenic not near genes chr3L 17788965 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-461 1427 chr3L 17790601 17790632 chr3L 17790886 17790901 6 282 2.0 6.0 4.0 1.2 300 chr3L 17790601 intergenic CG42815 - chr3L 17790751 intergenic CG42815 - chr3L 17790901 intergenic CG42815 - chr3L_6_17790001 chr3L_17790001 RAL-461 1428 chr3L 17799793 17799842 chr3L 17801600 17801649 S-element 16 1804 3.0 4.0 3.5 3.6 1856 chr3L 17799793 intron NUCB1 - chr3L 17800721 intron NUCB1 - chr3L 17801649 intron NUCB1 - chr3L_16_17800001 chr3L_17800001 RAL-461 1429 chr3L 17815418 17815461 chr3L 17817458 17817480 10 2030 14.0 22.5 18.2 0.5 2062 chr3L 17815418 intergenic Ir75a - chr3L 17816449 exon Ir75a - chr3L 17817480 exon Ir75a - chr3L_10_17815001 chr3L_17815001 RAL-461 1430 chr3L 17813917 17813963 chr3L 17818309 17818355 16 4396 21.0 21.0 21.0 0.7 4438 chr3L 17813917 intron cln3 - chr3L 17816136 exon Ir75a - chr3L 17818355 exon Ir75b - chr3L_16_17815001 chr3L_17815001 RAL-461 1431 chr3L 17834302 17834357 chr3L 17834486 17834492 11 178 0.5 2.0 1.2 5.0 190 chr3L 17834302 intron Grd + chr3L 17834397 intron Grd + chr3L 17834492 intron Grd + chr3L_11_17830001 chr3L_17830001 RAL-461 1432 chr3L 17837608 17837656 chr3L 17837716 17837764 4 107 0.5 1.5 1.0 2.0 156 chr3L 17837608 exon Grd + chr3L 17837686 intron Grd + chr3L 17837764 exon Grd + chr3L_4_17835001 chr3L_17835001 RAL-461 1433 chr3L 17918368 17918405 chr3L 17921188 17921216 opus 4 2819 0.5 2.5 1.5 1.6 2848 chr3L 17918368 intergenic not near genes chr3L 17919792 intergenic not near genes chr3L 17921216 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-461 1434 chr3L 18000654 18000704 chr3L 18000751 18000790 17 95 4.5 6.0 5.2 2.7 136 chr3L 18000654 intron Eip75B - chr3L 18000722 intron Eip75B - chr3L 18000790 intron Eip75B - chr3L_17_18000001 chr3L_18000001 RAL-461 1435 chr3L 18015904 18015925 chr3L 18016023 18016044 5 119 5.0 4.5 4.8 0.9 140 chr3L 18015904 intron Eip75B - chr3L 18015974 intron Eip75B - chr3L 18016044 intron Eip75B - chr3L_5_18015001 chr3L_18015001 RAL-461 1436 chr3L 18029957 18029967 chr3L 18030054 18030064 5 96 5.5 0.0 2.8 1.3 107 chr3L 18029957 intron Eip75B - chr3L 18030010 intron Eip75B - chr3L 18030064 intron Eip75B - chr3L_5_18030001 chr3L_18030001 RAL-461 1437 chr3L 18047686 18047733 chr3L 18056763 18056774 roo 18 9074 4.0 4.5 4.2 3.5 9088 chr3L 18047686 intron Eip75B - chr3L 18052230 intron Eip75B - chr3L 18056774 intron Eip75B - chr3L_18_18050001 chr3L_18050001 RAL-461 1438 chr3L 18092769 18092791 chr3L 18092899 18092926 6 132 7.5 0.0 3.8 1.2 157 chr3L 18092769 intron CG13698 - chr3L 18092848 intron CG13698 - chr3L 18092926 intron CG13698 - chr3L_6_18090001 chr3L_18090001 RAL-461 1439 chr3L 18106235 18106250 chr3L 18106374 18106378 4 136 3.5 0.5 2.0 1.3 143 chr3L 18106235 intergenic CG13698 -,mRpS26 + chr3L 18106306 intergenic CG13698 -,mRpS26 + chr3L 18106378 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-461 1440 chr3L 18106253 18106264 chr3L 18106370 18106403 6 132 2.5 0.5 1.5 2.4 150 chr3L 18106253 intergenic CG13698 -,mRpS26 + chr3L 18106328 intergenic CG13698 -,mRpS26 + chr3L 18106403 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-461 1441 chr3L 18107595 18107622 chr3L 18107708 18107730 9 112 8.0 3.5 5.8 1.3 135 chr3L 18107595 intergenic mRpS26 +,CG5147 - chr3L 18107662 intergenic mRpS26 +,CG5147 - chr3L 18107730 intergenic CG5147 -,mRpS26 + chr3L_9_18105001 chr3L_18105001 RAL-461 1442 chr3L 18118193 18118204 chr3L 18118291 18118296 4 96 2.5 3.0 2.8 1.1 103 chr3L 18118193 3` UTR,intron CG32195 +,CG7341 + chr3L 18118244 3` UTR,intron CG32195 +,CG7341 + chr3L 18118296 3` UTR,intron CG32195 +,CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-461 1443 chr3L 18118205 18118224 chr3L 18118289 18118322 6 94 2.5 3.0 2.8 1.6 117 chr3L 18118205 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118322 3` UTR,intron CG32195 +,CG7341 + chr3L_6_18115001 chr3L_18115001 RAL-461 1444 chr3L 18124406 18124428 chr3L 18124510 18124532 5 104 3.0 6.0 4.5 0.9 126 chr3L 18124406 intergenic not near genes chr3L 18124469 intergenic not near genes chr3L 18124532 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-461 1445 chr3L 18133003 18133043 chr3L 18133112 18133143 10 109 4.5 0.5 2.5 2.9 140 chr3L 18133003 intergenic Cyp312a1 - chr3L 18133073 intergenic Cyp312a1 - chr3L 18133143 intergenic Cyp312a1 - chr3L_10_18130001 chr3L_18130001 RAL-461 1446 chr3L 18138157 18138181 chr3L 18138261 18138276 4 100 3.5 2.5 3.0 1.0 119 chr3L 18138157 intergenic not near genes chr3L 18138216 intergenic not near genes chr3L 18138276 intergenic not near genes chr3L_4_18135001 chr3L_18135001 RAL-461 1447 chr3L 18150386 18150414 chr3L 18150507 18150536 4 121 5.5 0.0 2.8 1.1 150 chr3L 18150386 intron CG7330 + chr3L 18150461 intron CG7330 + chr3L 18150536 intron CG7330 + chr3L_4_18150001 chr3L_18150001 RAL-461 1448 chr3L 18172678 18172695 chr3L 18172774 18172791 8 96 5.5 7.0 6.2 1.1 113 chr3L 18172678 intron W - chr3L 18172734 intron W - chr3L 18172791 intron W - chr3L_8_18170001 chr3L_18170001 RAL-461 1449 chr3L 18175802 18175834 chr3L 18176061 18176093 12 257 6.0 6.0 6.0 1.7 291 chr3L 18175802 intron W - chr3L 18175948 intron W - chr3L 18176093 intron W - chr3L_12_18175001 chr3L_18175001 RAL-461 1450 chr3L 18198930 18198931 chr3L 24821492 24821494 16 6622563 0.0 9.5 4.8 2.8 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_16_21510001 chr3L_21510001 RAL-461 1451 chr3L 18203579 18203619 chr3L 18203694 18203722 4 112 5.0 0.5 2.8 1.1 143 chr3L 18203579 3` UTR CG7320 + chr3L 18203650 intergenic CG7320 + chr3L 18203722 intergenic CG7320 + chr3L_4_18200001 chr3L_18200001 RAL-461 1452 chr3L 18223153 18223185 chr3L 18223246 18223300 10 100 3.0 0.0 1.5 4.0 147 chr3L 18223153 intergenic not near genes chr3L 18223226 intergenic not near genes chr3L 18223300 intergenic not near genes chr3L_10_18220001 chr3L_18220001 RAL-461 1453 chr3L 18248939 18248981 chr3L 18249057 18249099 10 115 6.5 4.5 5.5 1.5 160 chr3L 18248939 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249099 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-461 1454 chr3L 18258858 18258886 chr3L 18258983 18259032 6 141 3.5 0.5 2.0 2.0 174 chr3L 18258858 intergenic not near genes chr3L 18258945 intergenic not near genes chr3L 18259032 intergenic not near genes chr3L_6_18255001 chr3L_18255001 RAL-461 1455 chr3L 18262454 18262485 chr3L 18262557 18262588 7 102 3.5 3.0 3.2 1.7 134 chr3L 18262454 intergenic not near genes chr3L 18262521 intergenic not near genes chr3L 18262588 intergenic not near genes chr3L_7_18260001 chr3L_18260001 RAL-461 1456 chr3L 18267827 18267870 chr3L 18267924 18267967 13 92 2.0 4.0 3.0 3.2 140 chr3L 18267827 intergenic not near genes chr3L 18267897 intergenic not near genes chr3L 18267967 intergenic not near genes chr3L_13_18265001 chr3L_18265001 RAL-461 1457 chr3L 18301337 18301378 chr3L 18301446 18301472 15 105 1.5 5.5 3.5 3.3 135 chr3L 18301337 intergenic CG13700 - chr3L 18301404 intergenic CG13700 - chr3L 18301472 intergenic CG13700 - chr3L_15_18300001 chr3L_18300001 RAL-461 1458 chr3L 18376068 18376103 chr3L 18376177 18376202 4 106 4.5 1.5 3.0 1.0 134 chr3L 18376068 intergenic not near genes chr3L 18376135 intergenic not near genes chr3L 18376202 intergenic not near genes chr3L_4_18375001 chr3L_18375001 RAL-461 1459 chr3L 18406115 18406154 chr3L 18406211 18406250 5 96 2.0 5.0 3.5 1.1 135 chr3L 18406115 intergenic not near genes chr3L 18406182 intergenic not near genes chr3L 18406250 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-461 1460 chr3L 18408714 18408758 chr3L 18408818 18408863 12 106 1.0 4.5 2.8 3.2 149 chr3L 18408714 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408863 intergenic not near genes chr3L_12_18405001 chr3L_18405001 RAL-461 1461 chr3L 9013690 9013694 chr3L 18417066 18417066 8 9403374 15.5 7.0 11.2 0.7 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-461 1462 chr3L 18436047 18436081 chr3L 18436165 18436199 12 115 4.5 5.0 4.8 2.1 152 chr3L 18436047 intergenic not near genes chr3L 18436123 intergenic not near genes chr3L 18436199 intergenic not near genes chr3L_12_18435001 chr3L_18435001 RAL-461 1463 chr3L 18445229 18445273 chr3L 18445327 18445371 7 90 6.0 3.5 4.8 1.2 142 chr3L 18445229 intergenic not near genes chr3L 18445300 intergenic not near genes chr3L 18445371 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-461 1464 chr3L 18448601 18448620 chr3L 18448712 18448732 4 111 7.5 2.5 5.0 0.7 131 chr3L 18448601 intergenic not near genes chr3L 18448666 intergenic not near genes chr3L 18448732 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-461 1465 chr3L 18456258 18456302 chr3L 18456366 18456410 12 107 4.0 4.5 4.2 2.3 152 chr3L 18456258 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456410 3` UTR CR44670 - chr3L_12_18455001 chr3L_18455001 RAL-461 1466 chr3L 18506140 18506144 chr3L 18509612 18509627 F-element 5 3479 6.0 9.5 7.8 0.6 3487 chr3L 18506140 intergenic not near genes chr3L 18507884 intergenic not near genes chr3L 18509627 intergenic not near genes chr3L_5_18505001 chr3L_18505001 RAL-461 1467 chr3L 18506148 18506161 chr3L 18509611 18509644 F-element 6 3477 4.5 9.5 7.0 0.8 3496 chr3L 18506148 intergenic not near genes chr3L 18507896 intergenic not near genes chr3L 18509644 intergenic not near genes chr3L_6_18505001 chr3L_18505001 RAL-461 1468 chr3L 18528613 18528652 chr3L 18537794 18537833 roo 9 9177 5.5 5.5 5.5 1.4 9220 chr3L 18528613 intergenic not near genes chr3L 18533223 intergenic not near genes chr3L 18537833 intergenic not near genes chr3L_9_18530001 chr3L_18530001 RAL-461 1469 chr3L 18593946 18593977 chr3L 18595936 18595945 Doc 11 1993 3.0 2.5 2.8 2.9 1999 chr3L 18593946 intergenic term - chr3L 18594946 intergenic not near genes chr3L 18595945 intergenic CR45389 + chr3L_11_18590001 chr3L_18590001 RAL-461 1470 chr3L 18634606 18634659 chr3L 18634709 18634763 14 95 3.0 1.0 2.0 4.7 157 chr3L 18634606 intron MYPT-75D + chr3L 18634684 intron MYPT-75D + chr3L 18634763 intron MYPT-75D + chr3L_14_18630001 chr3L_18630001 RAL-461 1471 chr3L 18649636 18649659 chr3L 18650013 18650042 5 382 3.0 3.5 3.2 1.2 406 chr3L 18649636 intron MYPT-75D + chr3L 18649839 intron MYPT-75D + chr3L 18650042 intron MYPT-75D + chr3L_5_18645001 chr3L_18645001 RAL-461 1472 chr3L 18701114 18701143 chr3L 18701222 18701250 4 107 2.5 2.5 2.5 1.1 136 chr3L 18701114 intergenic not near genes chr3L 18701182 intergenic not near genes chr3L 18701250 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-461 1473 chr3L 18710743 18710776 chr3L 18718715 18718748 Stalker2 11 7968 7.5 5.0 6.2 1.5 8005 chr3L 18710743 intergenic not near genes chr3L 18714746 intergenic not near genes chr3L 18718748 intergenic not near genes chr3L_11_18710001 chr3L_18710001 RAL-461 1474 chr3L 18753527 18753564 chr3L 18753629 18753656 7 99 2.0 3.5 2.8 1.8 129 chr3L 18753527 intron ftz-f1 - chr3L 18753592 intron ftz-f1 - chr3L 18753656 intron ftz-f1 - chr3L_7_18750001 chr3L_18750001 RAL-461 1475 chr3L 18772389 18772434 chr3L 18781090 18781135 roo 13 8697 3.5 0.5 2.0 4.3 8746 chr3L 18772389 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781135 intron ftz-f1 - chr3L_13_18775001 chr3L_18775001 RAL-461 1476 chr3L 18797314 18797332 chr3L 18797398 18797436 5 100 3.5 3.5 3.5 1.1 122 chr3L 18797314 intron ftz-f1 - chr3L 18797375 intron ftz-f1 - chr3L 18797436 intron ftz-f1 - chr3L_5_18795001 chr3L_18795001 RAL-461 1477 chr3L 18810128 18810174 chr3L 18810224 18810275 9 100 5.5 1.0 3.2 2.1 147 chr3L 18810128 intron CG14073 - chr3L 18810202 intron CG14073 - chr3L 18810275 intron CG14073 - chr3L_9_18810001 chr3L_18810001 RAL-461 1478 chr3L 18833763 18833812 chr3L 18834947 18834966 1360 4 1164 1.5 2.0 1.8 1.4 1203 chr3L 18833763 intron Indy - chr3L 18834364 intron Indy - chr3L 18834966 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-461 1479 chr3L 18843860 18843870 chr3L 18843968 18843988 6 116 8.0 3.0 5.5 0.9 128 chr3L 18843860 intron Indy - chr3L 18843924 intron Indy - chr3L 18843988 intron Indy - chr3L_6_18840001 chr3L_18840001 RAL-461 1480 chr3L 18868951 18868996 chr3L 18869052 18869097 14 100 6.0 3.5 4.8 2.4 146 chr3L 18868951 3` UTR Dysb + chr3L 18869024 3` UTR Dysb + chr3L 18869097 3` UTR Dysb + chr3L_14_18865001 chr3L_18865001 RAL-461 1481 chr3L 18924460 18924509 chr3L 18924556 18924605 10 96 1.0 3.0 2.0 3.3 145 chr3L 18924460 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924605 intron CG32204 - chr3L_10_18920001 chr3L_18920001 RAL-461 1482 chr3L 18933604 18933656 chr3L 18933718 18933769 16 113 3.5 4.5 4.0 3.2 165 chr3L 18933604 intron CG32204 - chr3L 18933686 intron CG32204 - chr3L 18933769 intron CG32204 - chr3L_16_18930001 chr3L_18930001 RAL-461 1483 chr3L 18935827 18935834 chr3L 18935936 18935943 4 109 6.0 5.5 5.8 0.6 116 chr3L 18935827 intron CG32204 - chr3L 18935885 intron CG32204 - chr3L 18935943 intron CG32204 - chr3L_4_18935001 chr3L_18935001 RAL-461 1484 chr3L 18935838 18935864 chr3L 18935927 18935963 9 101 3.5 5.0 4.2 1.7 125 chr3L 18935838 intron CG32204 - chr3L 18935900 intron CG32204 - chr3L 18935963 intron CG32204 - chr3L_9_18935001 chr3L_18935001 RAL-461 1485 chr3L 18959978 18960029 chr3L 18960079 18960130 9 100 1.0 2.5 1.8 3.2 152 chr3L 18959978 intergenic not near genes chr3L 18960054 intergenic not near genes chr3L 18960130 intergenic not near genes chr3L_9_18960001 chr3L_18960001 RAL-461 1486 chr3L 19009962 19010002 chr3L 19010109 19010155 10 141 2.5 5.5 4.0 2.0 193 chr3L 19009962 intron nkd - chr3L 19010058 intron nkd - chr3L 19010155 intron nkd - chr3L_10_19010001 chr3L_19010001 RAL-461 1487 chr3L 19015160 19015217 chr3L 19015264 19015305 4 98 0.0 2.0 1.0 2.0 145 chr3L 19015160 intron nkd - chr3L 19015232 intron nkd - chr3L 19015305 intron nkd - chr3L_4_19015001 chr3L_19015001 RAL-461 1488 chr3L 19111383 19111408 chr3L 19111488 19111498 6 100 4.0 1.0 2.5 1.7 115 chr3L 19111383 intron CG14082 - chr3L 19111440 intron CG14082 - chr3L 19111498 intron CG14082 - chr3L_6_19110001 chr3L_19110001 RAL-461 1489 chr3L 19117027 19117073 chr3L 19124492 19124512 mdg1 7 7455 5.0 3.0 4.0 1.4 7485 chr3L 19117027 intron CG14082 - chr3L 19120770 intron CG14082 - chr3L 19124512 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-461 1490 chr3L 19135093 19135123 chr3L 19135244 19135295 8 167 0.5 3.5 2.0 2.7 202 chr3L 19135093 intron CG14082 - chr3L 19135194 intron CG14082 - chr3L 19135295 intron CG14082 - chr3L_8_19135001 chr3L_19135001 RAL-461 1491 chr3L 19182366 19182415 chr3L 19182467 19182516 8 100 3.5 1.5 2.5 2.3 150 chr3L 19182366 intron fz2 - chr3L 19182441 intron fz2 - chr3L 19182516 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-461 1492 chr3L 19208042 19208075 chr3L 19209436 19209469 Doc 6 1391 2.0 1.0 1.5 2.4 1427 chr3L 19208042 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209469 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-461 1493 chr3L 19210104 19210139 chr3L 19210220 19210255 6 116 0.0 2.0 1.0 3.0 151 chr3L 19210104 intron fz2 - chr3L 19210180 intron fz2 - chr3L 19210255 intron fz2 - chr3L_6_19210001 chr3L_19210001 RAL-461 1494 chr3L 19222355 19222396 chr3L 19222493 19222537 14 135 3.0 3.0 3.0 3.5 182 chr3L 19222355 intron fz2 - chr3L 19222446 intron fz2 - chr3L 19222537 intron fz2 - chr3L_14_19220001 chr3L_19220001 RAL-461 1495 chr3L 19238704 19238743 chr3L 19238831 19238870 14 126 6.0 3.5 4.8 2.4 166 chr3L 19238704 intergenic not near genes chr3L 19238787 intergenic not near genes chr3L 19238870 intergenic not near genes chr3L_14_19235001 chr3L_19235001 RAL-461 1496 chr3L 19244110 19244124 chr3L 19244202 19244222 4 96 2.0 3.5 2.8 1.1 112 chr3L 19244110 intergenic not near genes chr3L 19244166 intergenic not near genes chr3L 19244222 intergenic not near genes chr3L_4_19240001 chr3L_19240001 RAL-461 1497 chr3L 19390703 19390760 chr3L 19390821 19390861 4 112 1.5 3.5 2.5 1.1 158 chr3L 19390703 intron CG32206 - chr3L 19390782 intron CG32206 - chr3L 19390861 intron CG32206 - chr3L_4_19390001 chr3L_19390001 RAL-461 1498 chr3L 19439240 19439288 chr3L 19439358 19439398 5 113 1.0 4.0 2.5 1.4 158 chr3L 19439240 intergenic not near genes chr3L 19439319 intergenic not near genes chr3L 19439398 intergenic not near genes chr3L_5_19435001 chr3L_19435001 RAL-461 1499 chr3L 19544230 19544265 chr3L 19544316 19544361 11 94 2.0 4.0 3.0 2.8 131 chr3L 19544230 intergenic CG9279 -,l(3)76BDr - chr3L 19544296 intergenic l(3)76BDr -,CG9279 - chr3L 19544361 3` UTR l(3)76BDr - chr3L_11_19540001 chr3L_19540001 RAL-461 1500 chr3L 19699775 19699790 chr3L 19699872 19699887 4 96 5.0 4.5 4.8 0.7 112 chr3L 19699775 intergenic not near genes chr3L 19699831 intergenic not near genes chr3L 19699887 intergenic not near genes chr3L_4_19695001 chr3L_19695001 RAL-461 1501 chr3L 19703827 19703877 chr3L 19704001 19704051 14 171 3.0 6.0 4.5 2.5 224 chr3L 19703827 intron serp - chr3L 19703939 intron serp - chr3L 19704051 intron serp - chr3L_14_19700001 chr3L_19700001 RAL-461 1502 chr3L 19792343 19792363 chr3L 19792458 19792478 9 114 5.5 7.0 6.2 1.2 135 chr3L 19792343 intron,intron CG42637 -,Gyc76C - chr3L 19792410 intron,intron CG42637 -,Gyc76C - chr3L 19792478 intron,intron CG42637 -,Gyc76C - chr3L_9_19790001 chr3L_19790001 RAL-461 1503 chr3L 19820298 19820319 chr3L 19827849 19827873 412 5 7562 3.5 4.5 4.0 1.0 7575 chr3L 19820298 intron Deaf1 + chr3L 19824086 intron Deaf1 + chr3L 19827873 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-461 1504 chr3L 19848488 19848535 chr3L 19857698 19857715 roo 10 9195 5.5 3.5 4.5 1.8 9227 chr3L 19848488 intron Papss + chr3L 19853102 intron Papss + chr3L 19857715 intron Papss + chr3L_10_19850001 chr3L_19850001 RAL-461 1505 chr3L 19861828 19861845 chr3L 19863636 19863653 S-element 5 1807 2.5 3.0 2.8 1.3 1825 chr3L 19861828 5` UTR CR45433 + chr3L 19862740 intergenic not near genes chr3L 19863653 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-461 1506 chr3L 19933528 19933561 chr3L 19934360 19934396 7 840 8.0 3.0 5.5 1.1 868 chr3L 19933528 intergenic CR45678 + chr3L 19933962 5` UTR CR45678 + chr3L 19934396 intergenic CR45678 + chr3L_7_19930001 chr3L_19930001 RAL-461 1507 chr3L 19981185 19981191 chr3L 19981285 19981291 5 100 6.5 2.5 4.5 0.9 106 chr3L 19981185 intergenic CG17732 + chr3L 19981238 intergenic CG17732 + chr3L 19981291 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-461 1508 chr3L 19981201 19981229 chr3L 19981284 19981314 10 91 3.0 2.5 2.8 2.6 113 chr3L 19981201 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981314 intergenic CG17732 + chr3L_10_19980001 chr3L_19980001 RAL-461 1509 chr3L 20113642 20113689 chr3L 20122919 20122944 roo 22 9271 6.0 8.0 7.0 2.8 9302 chr3L 20113642 intergenic not near genes chr3L 20118293 intergenic not near genes chr3L 20122944 intergenic not near genes chr3L_22_20115001 chr3L_20115001 RAL-461 1510 chr3L 20143065 20143110 chr3L 20143165 20143175 11 96 6.0 6.5 6.2 1.5 110 chr3L 20143065 intergenic not near genes chr3L 20143120 intergenic not near genes chr3L 20143175 intergenic not near genes chr3L_11_20140001 chr3L_20140001 RAL-461 1511 chr3L 20148272 20148312 chr3L 20148377 20148422 7 99 3.5 4.0 3.8 1.5 150 chr3L 20148272 intergenic not near genes chr3L 20148347 intergenic not near genes chr3L 20148422 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-461 1512 chr3L 20156144 20156192 chr3L 20156286 20156334 10 138 4.0 1.5 2.8 2.6 190 chr3L 20156144 intron CG42674 - chr3L 20156239 intron CG42674 - chr3L 20156334 intron CG42674 - chr3L_10_20155001 chr3L_20155001 RAL-461 1513 chr3L 20220557 20220576 chr3L 20220636 20220680 6 99 2.5 2.5 2.5 1.7 123 chr3L 20220557 intergenic CG6933 - chr3L 20220618 intergenic CG6933 - chr3L 20220680 intergenic CG6933 - chr3L_6_20220001 chr3L_20220001 RAL-461 1514 chr3L 20257314 20257342 chr3L 20258454 20258477 pogo 5 1139 8.0 4.0 6.0 0.7 1163 chr3L 20257314 intron rdgC + chr3L 20257896 intron rdgC + chr3L 20258477 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-461 1515 chr3L 20257348 20257363 chr3L 20258452 20258503 pogo 8 1122 4.0 3.0 3.5 1.8 1155 chr3L 20257348 intron rdgC + chr3L 20257926 intron rdgC + chr3L 20258503 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-461 1516 chr3L 20386917 20386970 chr3L 20387039 20387072 14 118 4.5 2.0 3.2 3.3 155 chr3L 20386917 intron fbl + chr3L 20386994 intron fbl + chr3L 20387072 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-461 1517 chr3L 20394494 20394543 chr3L 20394598 20394647 18 98 4.5 5.0 4.8 3.1 153 chr3L 20394494 intergenic not near genes chr3L 20394570 intergenic not near genes chr3L 20394647 intergenic not near genes chr3L_18_20390001 chr3L_20390001 RAL-461 1518 chr3L 20402188 20402227 chr3L 20402274 20402328 7 90 5.0 5.5 5.2 1.1 140 chr3L 20402188 intergenic not near genes chr3L 20402258 intergenic not near genes chr3L 20402328 intergenic not near genes chr3L_7_20400001 chr3L_20400001 RAL-461 1519 chr3L 20403565 20403574 chr3L 20403675 20403689 4 114 11.5 3.5 7.5 0.5 124 chr3L 20403565 intergenic not near genes chr3L 20403627 intergenic not near genes chr3L 20403689 intergenic not near genes chr3L_4_20400001 chr3L_20400001 RAL-461 1520 chr3L 20403575 20403609 chr3L 20403673 20403717 18 105 4.0 3.5 3.8 3.8 142 chr3L 20403575 intergenic not near genes chr3L 20403646 intergenic not near genes chr3L 20403717 intergenic not near genes chr3L_18_20400001 chr3L_20400001 RAL-461 1521 chr3L 20462578 20462604 chr3L 20462670 20462689 9 95 6.5 0.5 3.5 2.0 111 chr3L 20462578 intron atk - chr3L 20462634 intron atk - chr3L 20462689 intron atk - chr3L_9_20460001 chr3L_20460001 RAL-461 1522 chr3L 20476737 20476783 chr3L 20484356 20484402 springer 19 7614 5.0 6.5 5.8 2.8 7665 chr3L 20476737 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484402 3` UTR ZnT77C - chr3L_19_20480001 chr3L_20480001 RAL-461 1523 chr3L 20509152 20509172 chr3L 20509250 20509268 7 98 3.5 7.5 5.5 1.1 116 chr3L 20509152 intron CG32425 + chr3L 20509210 intron CG32425 + chr3L 20509268 intron CG32425 + chr3L_7_20505001 chr3L_20505001 RAL-461 1524 chr3L 20525229 20525229 chr3L 22908066 22908068 6 2382838 16.0 27.5 21.8 0.3 2382839 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908068 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-461 1525 chr3L 20525230 20525230 chr3L 24821493 24821494 5 4296264 16.0 9.5 12.8 0.4 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-461 1526 chr3L 20529596 20529615 chr3L 20529899 20529904 4 302 5.0 6.0 5.5 0.6 308 chr3L 20529596 exon Rcd2 - chr3L 20529750 exon Rcd2 - chr3L 20529904 intron Rcd2 - chr3L_4_20525001 chr3L_20525001 RAL-461 1527 chr3L 20548350 20548385 chr3L 20548454 20548454 12 101 4.5 4.5 4.5 2.2 104 chr3L 20548350 intergenic not near genes chr3L 20548402 intergenic not near genes chr3L 20548454 intergenic not near genes chr3L_12_20545001 chr3L_20545001 RAL-461 1528 chr3L 20821277 20821296 chr3L 20824766 20824785 NOF 5 3489 5.5 6.5 6.0 0.7 3508 chr3L 20821277 intron Pka-R1 + chr3L 20823031 intron Pka-R1 + chr3L 20824785 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-461 1529 chr3L 20849252 20849301 chr3L 20849351 20849388 19 96 6.0 4.5 5.2 3.1 136 chr3L 20849252 intron CG32432 - chr3L 20849320 intron CG32432 - chr3L 20849388 intron CG32432 - chr3L_19_20845001 chr3L_20845001 RAL-461 1530 chr3L 20868148 20868192 chr3L 20868490 20868534 8 342 3.0 5.5 4.2 1.5 386 chr3L 20868148 intron CG32432 - chr3L 20868341 intron CG32432 - chr3L 20868534 intron CG32432 - chr3L_8_20865001 chr3L_20865001 RAL-461 1531 chr3L 20986742 20986788 chr3L 20986840 20986876 5 91 3.5 1.5 2.5 1.4 134 chr3L 20986742 intergenic not near genes chr3L 20986809 intergenic not near genes chr3L 20986876 intergenic not near genes chr3L_5_20985001 chr3L_20985001 RAL-461 1532 chr3L 21014900 21014946 chr3L 21023401 21023447 Tirant 6 8490 2.0 1.0 1.5 2.4 8547 chr3L 21014900 intron skd - chr3L 21019174 intron skd - chr3L 21023447 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-461 1533 chr3L 21047638 21047663 chr3L 21047758 21047796 6 134 2.0 2.0 2.0 2.0 158 chr3L 21047638 intron siz + chr3L 21047717 intron siz + chr3L 21047796 intron siz + chr3L_6_21045001 chr3L_21045001 RAL-461 1534 chr3L 21082192 21082241 chr3L 21082290 21082313 8 94 4.0 2.0 3.0 2.0 121 chr3L 21082192 intron ko - chr3L 21082252 intron ko - chr3L 21082313 intron ko - chr3L_8_21080001 chr3L_21080001 RAL-461 1535 chr3L 21100490 21100537 chr3L 21100772 21100792 12 276 1.5 1.5 1.5 4.8 302 chr3L 21100490 intron ko - chr3L 21100641 intron ko - chr3L 21100792 intron ko - chr3L_12_21100001 chr3L_21100001 RAL-461 1536 chr3L 21151844 21151896 chr3L 21156948 21157000 flea 23 5104 5.5 4.5 5.0 3.8 5156 chr3L 21151844 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21157000 intron Ac78C - chr3L_23_21150001 chr3L_21150001 RAL-461 1537 chr3L 21228739 21228754 chr3L 21228837 21228863 5 100 4.5 2.5 3.5 1.1 124 chr3L 21228739 intron Eip78C + chr3L 21228801 intron Eip78C + chr3L 21228863 intron Eip78C + chr3L_5_21225001 chr3L_21225001 RAL-461 1538 chr3L 21306128 21306180 chr3L 21315307 21315322 roo 13 9170 3.0 3.0 3.0 3.2 9194 chr3L 21306128 3` UTR CG7632 + chr3L 21310725 intron Pc - chr3L 21315322 3` UTR Pc - chr3L_13_21310001 chr3L_21310001 RAL-461 1539 chr3L 21361710 21361751 chr3L 21362684 21362725 G2 12 973 3.5 4.0 3.8 2.5 1015 chr3L 21361710 intergenic CG32440 + chr3L 21362218 intergenic not near genes chr3L 21362725 intergenic not near genes chr3L_12_21360001 chr3L_21360001 RAL-461 1540 chr3L 21372704 21372747 chr3L 21379227 21379249 McClintock 9 6522 3.5 2.0 2.8 2.4 6545 chr3L 21372704 intergenic not near genes chr3L 21375976 intergenic not near genes chr3L 21379249 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-461 1541 chr3L 21408439 21408492 chr3L 21408537 21408590 9 95 0.5 4.0 2.2 2.8 151 chr3L 21408439 intron rgn + chr3L 21408514 intron rgn + chr3L 21408590 intron rgn + chr3L_9_21405001 chr3L_21405001 RAL-461 1542 chr3L 4341331 4341332 chr3L 21448027 21448027 4 17106695 9.5 20.0 14.8 0.3 17106696 chr3L 4341331 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-461 1543 chr3L 21458324 21458354 chr3L 21458439 21458443 INE-1 4 103 8.0 3.0 5.5 0.6 119 chr3L 21458324 intergenic not near genes chr3L 21458384 intergenic not near genes chr3L 21458443 intergenic not near genes chr3L_4_21455001 chr3L_21455001 RAL-461 1544 chr3L 21501156 21501168 chr3L 21501270 21501282 1360 7 114 5.0 11.0 8.0 0.8 126 chr3L 21501156 intron Glg1 - chr3L 21501219 intron Glg1 - chr3L 21501282 intron Glg1 - chr3L_7_21500001 chr3L_21500001 RAL-461 1545 chr3L 21541668 21541685 chr3L 21541819 21541836 7 151 3.5 2.5 3.0 1.8 168 chr3L 21541668 intergenic VhaM9.7-b + chr3L 21541752 intergenic not near genes chr3L 21541836 intergenic not near genes chr3L_7_21540001 chr3L_21540001 RAL-461 1546 chr3L 21769039 21769070 chr3L 21769146 21769177 12 105 7.5 9.0 8.2 1.3 138 chr3L 21769039 intron,intron Syn1 -,CG42689 + chr3L 21769108 intron,intron Syn1 -,CG42689 + chr3L 21769177 intron,intron Syn1 -,CG42689 + chr3L_12_21765001 chr3L_21765001 RAL-461 1547 chr3L 21836709 21836742 chr3L 21836815 21836848 13 106 7.0 2.5 4.8 2.2 139 chr3L 21836709 3` UTR P5CDh1 - chr3L 21836778 3` UTR P5CDh1 - chr3L 21836848 3` UTR P5CDh1 - chr3L_13_21835001 chr3L_21835001 RAL-461 1548 chr3L 21849494 21849533 chr3L 21849596 21849635 12 100 2.0 7.5 4.8 2.1 141 chr3L 21849494 intron mub + chr3L 21849564 intron mub + chr3L 21849635 intron mub + chr3L_12_21845001 chr3L_21845001 RAL-461 1549 chr3L 21905470 21905505 chr3L 21905592 21905617 4 117 1.0 1.0 1.0 2.0 147 chr3L 21905470 intron mub + chr3L 21905544 intron mub + chr3L 21905617 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-461 1550 chr3L 21972551 21972596 chr3L 21972725 21972774 9 171 2.5 3.5 3.0 2.2 223 chr3L 21972551 intron CG7470 + chr3L 21972662 intron CG7470 + chr3L 21972774 intron CG7470 + chr3L_9_21970001 chr3L_21970001 RAL-461 1551 chr3L 22023199 22023245 chr3L 22023311 22023348 11 106 3.0 3.0 3.0 2.8 149 chr3L 22023199 intergenic not near genes chr3L 22023274 intergenic not near genes chr3L 22023348 intergenic not near genes chr3L_11_22020001 chr3L_22020001 RAL-461 1552 chr3L 22092802 22092826 chr3L 22092920 22092938 7 115 4.5 6.5 5.5 1.1 136 chr3L 22092802 intergenic not near genes chr3L 22092870 intergenic not near genes chr3L 22092938 intergenic not near genes chr3L_7_22090001 chr3L_22090001 RAL-461 1553 chr3L 22099656 22099672 chr3L 22105862 22105876 3S18 6 6204 9.0 5.5 7.2 0.7 6220 chr3L 22099656 intergenic not near genes chr3L 22102766 intergenic not near genes chr3L 22105876 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-461 1554 chr3L 22099674 22099703 chr3L 22105861 22105909 3S18 14 6202 5.0 5.5 5.2 2.3 6235 chr3L 22099674 intergenic not near genes chr3L 22102792 intergenic not near genes chr3L 22105909 intergenic not near genes chr3L_14_22100001 chr3L_22100001 RAL-461 1555 chr3L 22134248 22134298 chr3L 22134365 22134415 13 110 3.0 5.5 4.2 2.5 167 chr3L 22134248 intergenic not near genes chr3L 22134332 intergenic not near genes chr3L 22134415 intergenic not near genes chr3L_13_22130001 chr3L_22130001 RAL-461 1556 chr3L 22366703 22366734 chr3L 22366801 22366826 8 96 2.0 7.5 4.8 1.4 123 chr3L 22366703 intron Ten-m - chr3L 22366764 intron Ten-m - chr3L 22366826 intron Ten-m - chr3L_8_22365001 chr3L_22365001 RAL-461 1557 chr3L 22447180 22447216 chr3L 22447287 22447327 10 109 6.0 4.5 5.2 1.6 147 chr3L 22447180 intergenic not near genes chr3L 22447254 intergenic not near genes chr3L 22447327 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-461 1558 chr3L 22447218 22447228 chr3L 22447285 22447339 5 89 3.0 4.5 3.8 1.0 121 chr3L 22447218 intergenic not near genes chr3L 22447278 intergenic not near genes chr3L 22447339 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-461 1559 chr3L 22511305 22511327 chr3L 22511392 22511415 10 95 9.0 3.5 6.2 1.4 110 chr3L 22511305 intergenic CR45429 + chr3L 22511360 intergenic CR45429 + chr3L 22511415 intergenic CR45429 + chr3L_10_22510001 chr3L_22510001 RAL-461 1560 chr3L 22555749 22555802 chr3L 22563239 22563282 blood 13 7484 3.5 0.5 2.0 4.3 7533 chr3L 22555749 intergenic not near genes chr3L 22559516 intergenic not near genes chr3L 22563282 intergenic not near genes chr3L_13_22555001 chr3L_22555001 RAL-461 1561 chr3L 22617169 22617223 chr3L 22624641 22624652 blood 19 7463 2.0 5.5 3.8 4.0 7483 chr3L 22617169 intron CG14459 - chr3L 22620910 intron CG14459 - chr3L 22624652 intron CG14459 - chr3L_19_22620001 chr3L_22620001 RAL-461 1562 chr3L 22761370 22761414 chr3L 22766824 22766858 Ivk 11 5449 7.0 8.5 7.8 1.2 5488 chr3L 22761370 intron SPoCk + chr3L 22764114 intron SPoCk + chr3L 22766858 intron SPoCk + chr3L_11_22760001 chr3L_22760001 RAL-461 1563 chr3L 22838564 22838612 chr3L 22838665 22838697 9 97 3.0 0.5 1.8 3.2 133 chr3L 22838564 intergenic CG11226 + chr3L 22838630 intergenic CG11226 + chr3L 22838697 intergenic not near genes chr3L_9_22835001 chr3L_22835001 RAL-461 1564 chr3L 22853450 22853715 chr3L 22853557 22853821 19 105 1.0 3.0 2.0 6.3 371 chr3L 22853450 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853821 5` UTR CR43426 + chr3L_19_22850001 chr3L_22850001 RAL-461 1565 chr3L 22865973 22866009 chr3L 22867122 22867162 Doc 10 1150 5.0 6.0 5.5 1.5 1189 chr3L 22865973 intron CG33170 + chr3L 22866568 intron CG33170 + chr3L 22867162 intron CG33170 + chr3L_10_22865001 chr3L_22865001 RAL-461 1566 chr3L 22897182 22897190 chr3L 22897285 22897293 5 102 4.0 5.5 4.8 0.9 111 chr3L 22897182 intergenic not near genes chr3L 22897238 intergenic not near genes chr3L 22897293 intergenic not near genes chr3L_5_22895001 chr3L_22895001 RAL-461 1567 chr3L 22897202 22897226 chr3L 22897277 22897329 5 89 2.5 4.5 3.5 1.1 127 chr3L 22897202 intergenic not near genes chr3L 22897266 intergenic not near genes chr3L 22897329 intergenic not near genes chr3L_5_22895001 chr3L_22895001 RAL-461 1568 chr3L 9307795 9307796 chr3L 22908066 22908066 5 13600270 15.0 27.5 21.2 0.2 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_5_16105001 chr3L_16105001 RAL-461 1569 chr3L 20525228 20525230 chr3L 22908066 22908066 9 2382837 16.0 27.5 21.8 0.4 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_9_21715001 chr3L_21715001 RAL-461 1570 chr3L 22908066 22908066 chr3L 24821492 24821495 11 1913428 29.0 9.5 19.2 0.5 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_11_23860001 chr3L_23860001 RAL-461 1571 chr3L 20525230 20525230 chr3L 22908067 22908067 7 2382837 16.0 27.0 21.5 0.3 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-461 1572 chr3L 22908067 22908067 chr3L 24821491 24821494 14 1913426 29.0 9.5 19.2 0.7 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_14_23860001 chr3L_23860001 RAL-461 1573 chr3L 22984414 22984457 chr3L 22984556 22984599 11 145 3.0 3.0 3.0 2.8 185 chr3L 22984414 intergenic not near genes chr3L 22984506 intergenic not near genes chr3L 22984599 intergenic not near genes chr3L_11_22980001 chr3L_22980001 RAL-461 1574 chr3L 22985285 22985333 chr3L 22985382 22985434 19 100 2.0 5.0 3.5 4.2 149 chr3L 22985285 intergenic not near genes chr3L 22985360 intergenic not near genes chr3L 22985434 intergenic not near genes chr3L_19_22985001 chr3L_22985001 RAL-461 1575 chr3L 22989863 22989894 chr3L 22996837 22996868 297 12 6979 3.5 4.5 4.0 2.4 7005 chr3L 22989863 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996868 intergenic not near genes chr3L_12_22990001 chr3L_22990001 RAL-461 1576 chr3L 23101263 23101311 chr3L 23101494 23101542 13 227 3.5 0.0 1.8 4.6 279 chr3L 23101263 intron CkIIalpha + chr3L 23101402 intron CkIIalpha + chr3L 23101542 intron CkIIalpha + chr3L_13_23100001 chr3L_23100001 RAL-461 1577 chr3L 23123224 23123274 chr3L 23123632 23123678 10 406 2.0 2.5 2.2 3.1 454 chr3L 23123224 intergenic not near genes chr3L 23123451 intergenic not near genes chr3L 23123678 intergenic not near genes chr3L_10_23120001 chr3L_23120001 RAL-461 1578 chr3L 23347874 23347919 chr3L 23347977 23347989 8 104 1.5 1.5 1.5 3.2 115 chr3L 23347874 intergenic not near genes chr3L 23347932 intergenic not near genes chr3L 23347989 intergenic not near genes chr3L_8_23345001 chr3L_23345001 RAL-461 1579 chr3L 23824013 23824033 chr3L 23824444 23824466 6 430 5.0 5.0 5.0 1.0 453 chr3L 23824013 intergenic not near genes chr3L 23824240 intergenic not near genes chr3L 23824466 intergenic not near genes chr3L_6_23820001 chr3L_23820001 RAL-461 1580 chr3L 24012396 24012432 chr3L 24020752 24020773 roo 5 8349 5.0 4.5 4.8 0.9 8377 chr3L 24012396 intergenic not near genes chr3L 24016584 intergenic not near genes chr3L 24020773 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-461 1581 chr3L 24122869 24122908 chr3L 24122975 24122994 5 99 11.5 8.5 10.0 0.5 125 chr3L 24122869 intron Snap25 + chr3L 24122932 intron Snap25 + chr3L 24122994 intron Snap25 + chr3L_5_24120001 chr3L_24120001 RAL-461 1582 chr3L 24168784 24168821 chr3L 24176119 24176159 ZAM 4 7339 1.5 0.5 1.0 2.0 7375 chr3L 24168784 intron Snap25 + chr3L 24172472 intron Snap25 + chr3L 24176159 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-461 1583 chr3L 24791886 24791915 chr3L 24796678 24796714 Doc 5 4798 5.0 3.0 4.0 1.0 4828 chr3L 24791886 intergenic not near genes chr3L 24794300 intergenic not near genes chr3L 24796714 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-461 1584 chr3L 20525229 20525230 chr3L 24821492 24821492 5 4296263 16.0 9.5 12.8 0.4 4296263 chr3L 20525229 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-461 1585 chr3L 18198930 18198931 chr3L 24821493 24821493 10 6622562 0.0 9.5 4.8 1.7 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_10_21510001 chr3L_21510001 RAL-461 1586 chr3L 20525228 20525230 chr3L 24821493 24821493 7 4296263 16.0 9.5 12.8 0.5 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_7_22670001 chr3L_22670001 RAL-461 1587 chr3L 26008767 26008786 chr3L 26008914 26008948 10 161 4.5 2.5 3.5 2.2 181 chr3L 26008767 intron CG40178 - chr3L 26008858 intron CG40178 - chr3L 26008948 intron CG40178 - chr3L_10_26005001 chr3L_26005001 RAL-461 1588 chr3L 27390438 27390709 chr3L 27390678 27390807 4 133 19.0 18.0 18.5 0.2 369 chr3L 27390438 intron Dbp80 + chr3L 27390622 intron Dbp80 + chr3L 27390807 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-461 1589 chr3L 27420724 27420738 chr3L 27423365 27423383 7 2642 24.5 16.5 20.5 0.3 2659 chr3L 27420724 exon Dbp80 + chr3L 27422054 exon Dbp80 + chr3L 27423383 intergenic not near genes chr3L_7_27420001 chr3L_27420001 RAL-461 1590 chr3R 97110 97111 chr3R 99846 99847 4 2736 16.0 15.5 15.8 0.2 2737 chr3R 97110 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99847 intergenic not near genes chr3R_4_95001 chr3R_95001 RAL-461 1591 chr3R 97112 97113 chr3R 99848 99849 5 2736 16.0 15.5 15.8 0.3 2737 chr3R 97112 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_5_95001 chr3R_95001 RAL-461 1592 chr3R 1830789 1830798 chr3R 1830889 1830898 4 100 3.5 2.0 2.8 1.1 109 chr3R 1830789 intergenic not near genes chr3R 1830844 intergenic not near genes chr3R 1830898 intergenic not near genes chr3R_4_1830001 chr3R_1830001 RAL-461 1593 chr3R 4132883 4132923 chr3R 4133057 4133097 11 174 2.0 3.0 2.5 3.1 214 chr3R 4132883 5` UTR Gfat1 + chr3R 4132990 intron Gfat1 + chr3R 4133097 intron Gfat1 + chr3R_11_4130001 chr3R_4130001 RAL-461 1594 chr3R 4206060 4206097 chr3R 4211655 4211692 mdg3 6 5595 2.5 4.5 3.5 1.3 5632 chr3R 4206060 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211692 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-461 1595 chr3R 4366747 4366771 chr3R 4375141 4375174 roo 12 8398 8.0 6.5 7.2 1.5 8427 chr3R 4366747 3` UTR CG1090 + chr3R 4370960 intergenic not near genes chr3R 4375174 5` UTR CR44922 + chr3R_12_4370001 chr3R_4370001 RAL-461 1596 chr3R 4366775 4366789 chr3R 4375140 4375192 roo 8 8388 4.0 6.0 5.0 1.3 8417 chr3R 4366775 3` UTR CG1090 + chr3R 4370984 intergenic not near genes chr3R 4375192 5` UTR CR44922 + chr3R_8_4370001 chr3R_4370001 RAL-461 1597 chr3R 4408417 4408445 chr3R 4412715 4412726 Juan 7 4309 3.5 5.0 4.2 1.3 4309 chr3R 4408417 intron CG32944 - chr3R 4410572 intron CG32944 - chr3R 4412726 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-461 1598 chr3R 4512379 4512390 chr3R 4512610 4512621 4 230 6.0 1.0 3.5 0.9 242 chr3R 4512379 intron CG34357 - chr3R 4512500 intron CG34357 - chr3R 4512621 intron CG34357 - chr3R_4_4510001 chr3R_4510001 RAL-461 1599 chr3R 4576511 4576563 chr3R 4576648 4576693 10 134 2.5 5.0 3.8 2.1 182 chr3R 4576511 intergenic not near genes chr3R 4576602 intergenic not near genes chr3R 4576693 intergenic not near genes chr3R_10_4575001 chr3R_4575001 RAL-461 1600 chr3R 4609531 4609580 chr3R 4610712 4610748 1360 9 1182 4.0 5.0 4.5 1.6 1217 chr3R 4609531 intergenic not near genes chr3R 4610140 intergenic not near genes chr3R 4610748 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-461 1601 chr3R 4680688 4680741 chr3R 4680787 4680840 16 97 3.0 3.5 3.2 3.8 152 chr3R 4680688 intron CG43427 + chr3R 4680764 intron CG43427 + chr3R 4680840 intron CG43427 + chr3R_16_4680001 chr3R_4680001 RAL-461 1602 chr3R 4733660 4733701 chr3R 4733804 4733845 8 140 2.0 5.5 3.8 1.7 185 chr3R 4733660 intergenic not near genes chr3R 4733752 intergenic not near genes chr3R 4733845 intergenic not near genes chr3R_8_4730001 chr3R_4730001 RAL-461 1603 chr3R 4753228 4753262 chr3R 4757551 4757585 F-element 7 4319 6.5 4.0 5.2 1.1 4357 chr3R 4753228 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757585 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-461 1604 chr3R 4796126 4796136 chr3R 4796251 4796274 4 131 8.0 5.5 6.8 0.5 148 chr3R 4796126 intron ctrip - chr3R 4796200 intron ctrip - chr3R 4796274 intron ctrip - chr3R_4_4795001 chr3R_4795001 RAL-461 1605 chr3R 4796138 4796146 chr3R 4796247 4796269 6 123 7.0 5.5 6.2 0.8 131 chr3R 4796138 intron ctrip - chr3R 4796204 intron ctrip - chr3R 4796269 intron ctrip - chr3R_6_4795001 chr3R_4795001 RAL-461 1606 chr3R 4861560 4861597 chr3R 4861646 4861654 6 88 2.0 2.5 2.2 1.9 94 chr3R 4861560 intron opa + chr3R 4861607 intron opa + chr3R 4861654 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-461 1607 chr3R 4922334 4922351 chr3R 4922423 4922450 5 97 1.5 0.5 1.0 2.5 116 chr3R 4922334 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922450 intron Cdep + chr3R_5_4920001 chr3R_4920001 RAL-461 1608 chr3R 4943593 4943622 chr3R 4943718 4943747 7 125 5.5 4.0 4.8 1.2 154 chr3R 4943593 intron Cdep + chr3R 4943670 intron Cdep + chr3R 4943747 intron Cdep + chr3R_7_4940001 chr3R_4940001 RAL-461 1609 chr3R 4966000 4966024 chr3R 4966099 4966136 8 109 5.0 4.5 4.8 1.4 136 chr3R 4966000 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966136 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-461 1610 chr3R 5045828 5045865 chr3R 5052950 5052987 HMS-Beagle 8 7121 4.0 7.0 5.5 1.2 7159 chr3R 5045828 3` UTR CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052987 intergenic CR45588 - chr3R_8_5045001 chr3R_5045001 RAL-461 1611 chr3R 5067960 5068013 chr3R 5073497 5073550 mdg3 33 5534 5.0 5.5 5.2 5.3 5590 chr3R 5067960 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073550 intergenic not near genes chr3R_33_5070001 chr3R_5070001 RAL-461 1612 chr3R 5158126 5158169 chr3R 5158239 5158270 8 110 4.5 4.0 4.2 1.5 144 chr3R 5158126 intron dpr16 + chr3R 5158198 intron dpr16 + chr3R 5158270 intron dpr16 + chr3R_8_5155001 chr3R_5155001 RAL-461 1613 chr3R 5161788 5161825 chr3R 5162553 5162581 7 762 4.5 11.0 7.8 0.8 793 chr3R 5161788 intron dpr16 + chr3R 5162184 intron dpr16 + chr3R 5162581 intron dpr16 + chr3R_7_5160001 chr3R_5160001 RAL-461 1614 chr3R 5278069 5278121 chr3R 5278170 5278222 12 97 3.0 3.0 3.0 3.0 153 chr3R 5278069 intron mtd - chr3R 5278146 intron mtd - chr3R 5278222 intron mtd - chr3R_12_5275001 chr3R_5275001 RAL-461 1615 chr3R 5333866 5333901 chr3R 5333974 5334009 15 107 8.0 4.0 6.0 2.1 143 chr3R 5333866 intron mtd - chr3R 5333938 intron mtd - chr3R 5334009 intron mtd - chr3R_15_5330001 chr3R_5330001 RAL-461 1616 chr3R 5338392 5338424 chr3R 5343577 5343594 Rt1c 7 5189 9.0 4.5 6.8 0.9 5202 chr3R 5338392 intron mtd - chr3R 5340993 intron mtd - chr3R 5343594 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-461 1617 chr3R 5376747 5376770 chr3R 5376850 5376874 4 104 2.5 3.5 3.0 1.0 127 chr3R 5376747 intergenic 7B2 +,CG14667 + chr3R 5376810 5` UTR 7B2 + chr3R 5376874 5` UTR 7B2 + chr3R_4_5375001 chr3R_5375001 RAL-461 1618 chr3R 5376772 5376779 chr3R 5376845 5376878 4 91 2.0 2.5 2.2 1.2 106 chr3R 5376772 intergenic 7B2 +,CG14667 + chr3R 5376825 5` UTR 7B2 + chr3R 5376878 5` UTR 7B2 + chr3R_4_5375001 chr3R_5375001 RAL-461 1619 chr3R 5385966 5386006 chr3R 5386157 5386193 8 188 1.5 5.0 3.2 1.9 227 chr3R 5385966 intron kkv - chr3R 5386080 intron kkv - chr3R 5386193 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-461 1620 chr3R 5445942 5445993 chr3R 5452422 5452472 Burdock 15 6477 3.0 2.5 2.8 3.9 6530 chr3R 5445942 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452472 intron CG14669 + chr3R_15_5445001 chr3R_5445001 RAL-461 1621 chr3R 5480220 5480234 chr3R 5480316 5480330 4 96 9.0 7.0 8.0 0.4 110 chr3R 5480220 intron,3` UTR Hcs +,ksr - chr3R 5480275 intron,3` UTR Hcs +,ksr - chr3R 5480330 intron,3` UTR Hcs +,ksr - chr3R_4_5480001 chr3R_5480001 RAL-461 1622 chr3R 5681894 5681920 chr3R 5681992 5682027 7 104 2.0 6.0 4.0 1.4 133 chr3R 5681894 exon Rab23 - chr3R 5681960 intron Rab23 - chr3R 5682027 intron Rab23 - chr3R_7_5680001 chr3R_5680001 RAL-461 1623 chr3R 5681921 5681931 chr3R 5681983 5682023 5 90 1.5 5.5 3.5 1.1 102 chr3R 5681921 intron Rab23 - chr3R 5681972 intron Rab23 - chr3R 5682023 intron Rab23 - chr3R_5_5680001 chr3R_5680001 RAL-461 1624 chr3R 5726075 5726125 chr3R 5726252 5726297 19 178 4.5 3.0 3.8 4.0 222 chr3R 5726075 intergenic not near genes chr3R 5726186 intergenic not near genes chr3R 5726297 intergenic not near genes chr3R_19_5725001 chr3R_5725001 RAL-461 1625 chr3R 5746002 5746021 chr3R 5746263 5746282 pogo 4 261 4.5 6.0 5.2 0.6 280 chr3R 5746002 3` UTR Madm + chr3R 5746142 3` UTR Madm + chr3R 5746282 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-461 1626 chr3R 5746026 5746046 chr3R 5746259 5746292 pogo 6 251 2.0 6.0 4.0 1.2 266 chr3R 5746026 3` UTR Madm + chr3R 5746159 3` UTR Madm + chr3R 5746292 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-461 1627 chr3R 5747003 5747032 chr3R 5753204 5753223 diver 9 6208 10.0 4.5 7.2 1.1 6220 chr3R 5747003 intergenic Madm + chr3R 5750113 intergenic not near genes chr3R 5753223 intergenic CG2091 - chr3R_9_5750001 chr3R_5750001 RAL-461 1628 chr3R 5809090 5809142 chr3R 5809360 5809407 pogo 8 266 2.5 4.0 3.2 1.9 317 chr3R 5809090 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809407 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-461 1629 chr3R 5822369 5822407 chr3R 5823544 5823571 1360 11 1180 7.0 4.5 5.8 1.6 1202 chr3R 5822369 3` UTR CG2023 - chr3R 5822970 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_11_5820001 chr3R_5820001 RAL-461 1630 chr3R 5927556 5927585 chr3R 5927810 5927844 pogo 11 255 5.5 8.0 6.8 1.4 288 chr3R 5927556 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927844 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-461 1631 chr3R 5954320 5954340 chr3R 5954416 5954436 10 94 7.0 8.0 7.5 1.2 116 chr3R 5954320 intron CG34113 - chr3R 5954378 intron CG34113 - chr3R 5954436 intron CG34113 - chr3R_10_5950001 chr3R_5950001 RAL-461 1632 chr3R 5954341 5954354 chr3R 5954407 5954450 7 90 6.5 5.0 5.8 1.0 109 chr3R 5954341 intron CG34113 - chr3R 5954396 intron CG34113 - chr3R 5954450 intron CG34113 - chr3R_7_5950001 chr3R_5950001 RAL-461 1633 chr3R 5988934 5988970 chr3R 5989031 5989064 6 99 4.0 4.0 4.0 1.2 130 chr3R 5988934 intergenic CR44927 + chr3R 5988999 intergenic CR44927 + chr3R 5989064 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-461 1634 chr3R 6009480 6009533 chr3R 6009623 6009635 14 136 3.0 2.5 2.8 3.7 155 chr3R 6009480 intergenic not near genes chr3R 6009558 intergenic not near genes chr3R 6009635 intergenic not near genes chr3R_14_6005001 chr3R_6005001 RAL-461 1635 chr3R 6010113 6010164 chr3R 6010230 6010264 13 115 2.5 4.0 3.2 3.1 151 chr3R 6010113 intergenic CG10280 - chr3R 6010188 intergenic CG10280 - chr3R 6010264 intergenic CG10280 - chr3R_13_6010001 chr3R_6010001 RAL-461 1636 chr3R 6035129 6035181 chr3R 6035224 6035231 10 88 4.0 2.5 3.2 2.4 102 chr3R 6035129 intergenic not near genes chr3R 6035180 intergenic not near genes chr3R 6035231 intergenic not near genes chr3R_10_6035001 chr3R_6035001 RAL-461 1637 chr3R 6121165 6121183 chr3R 6121403 6121421 BS 4 238 0.0 8.5 4.2 0.8 256 chr3R 6121165 intergenic not near genes chr3R 6121293 intergenic not near genes chr3R 6121421 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-461 1638 chr3R 6158505 6158536 chr3R 6167108 6167118 Tirant 5 8599 2.0 4.5 3.2 1.2 8613 chr3R 6158505 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-461 1639 chr3R 6175162 6175207 chr3R 6182454 6182458 HMS-Beagle2 14 7284 4.5 2.0 3.2 3.3 7296 chr3R 6175162 intergenic Osi1 + chr3R 6178810 intron CR45194 + chr3R 6182458 intergenic CR45194 + chr3R_14_6175001 chr3R_6175001 RAL-461 1640 chr3R 6191151 6191199 chr3R 6191251 6191298 11 97 3.5 3.5 3.5 2.4 147 chr3R 6191151 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191298 intron NPFR + chr3R_11_6190001 chr3R_6190001 RAL-461 1641 chr3R 6192633 6192663 chr3R 6192720 6192757 9 86 3.0 5.0 4.0 1.8 124 chr3R 6192633 exon NPFR + chr3R 6192695 intron NPFR + chr3R 6192757 intron NPFR + chr3R_9_6190001 chr3R_6190001 RAL-461 1642 chr3R 6203950 6203994 chr3R 6204102 6204141 16 149 3.0 2.0 2.5 4.6 191 chr3R 6203950 intron Osi24 + chr3R 6204046 intron Osi24 + chr3R 6204141 intron Osi24 + chr3R_16_6200001 chr3R_6200001 RAL-461 1643 chr3R 6283287 6283336 chr3R 6283394 6283443 17 107 5.5 3.5 4.5 3.1 156 chr3R 6283287 intergenic not near genes chr3R 6283365 intergenic not near genes chr3R 6283443 intergenic not near genes chr3R_17_6280001 chr3R_6280001 RAL-461 1644 chr3R 6316773 6316812 chr3R 6316870 6316882 12 99 4.5 5.0 4.8 2.1 109 chr3R 6316773 intron Osi17 + chr3R 6316828 intron Osi17 + chr3R 6316882 intron Osi17 + chr3R_12_6315001 chr3R_6315001 RAL-461 1645 chr3R 6375375 6375411 chr3R 6375478 6375514 8 104 3.5 3.0 3.2 1.9 139 chr3R 6375375 exon,5` UTR CG42564 +,snoRNA:83E4-5 + chr3R 6375444 intron,5` UTR CG42564 +,snoRNA:83E4-5 + chr3R 6375514 intron CG42564 + chr3R_8_6375001 chr3R_6375001 RAL-461 1646 chr3R 6377312 6377356 chr3R 6377418 6377463 15 105 4.0 8.0 6.0 2.1 151 chr3R 6377312 3` UTR CG42564 + chr3R 6377388 3` UTR CG1024 - chr3R 6377463 3` UTR CG1024 - chr3R_15_6375001 chr3R_6375001 RAL-461 1647 chr3R 6461559 6461613 chr3R 6461660 6461713 10 98 3.5 7.5 5.5 1.5 154 chr3R 6461559 intergenic not near genes chr3R 6461636 intergenic not near genes chr3R 6461713 intergenic not near genes chr3R_10_6460001 chr3R_6460001 RAL-461 1648 chr3R 6510028 6510051 chr3R 6515104 6515152 jockey 8 5096 7.5 3.0 5.2 1.3 5124 chr3R 6510028 intergenic not near genes chr3R 6512590 intergenic not near genes chr3R 6515152 intergenic not near genes chr3R_8_6510001 chr3R_6510001 RAL-461 1649 chr3R 6578871 6578909 chr3R 6579011 6579045 6 138 5.0 3.0 4.0 1.2 174 chr3R 6578871 intron dpr11 - chr3R 6578958 intron dpr11 - chr3R 6579045 intron dpr11 - chr3R_6_6575001 chr3R_6575001 RAL-461 1650 chr3R 6689318 6689368 chr3R 6689420 6689465 10 94 2.0 1.0 1.5 4.0 147 chr3R 6689318 intergenic Ccp84Af - chr3R 6689392 intergenic Ccp84Af - chr3R 6689465 intergenic Ccp84Af - chr3R_10_6685001 chr3R_6685001 RAL-461 1651 chr3R 6826944 6826963 chr3R 6827040 6827059 5 95 9.0 1.0 5.0 0.8 115 chr3R 6826944 intron Scr - chr3R 6827002 intron Scr - chr3R 6827059 intron Scr - chr3R_5_6825001 chr3R_6825001 RAL-461 1652 chr3R 6856369 6856394 chr3R 6856506 6856522 5 135 3.0 4.0 3.5 1.1 153 chr3R 6856369 intergenic not near genes chr3R 6856446 intergenic not near genes chr3R 6856522 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-461 1653 chr3R 6862206 6862211 chr3R 6862313 6862318 4 107 5.0 6.0 5.5 0.6 112 chr3R 6862206 intergenic not near genes chr3R 6862262 intergenic not near genes chr3R 6862318 intergenic not near genes chr3R_4_6860001 chr3R_6860001 RAL-461 1654 chr3R 6862212 6862249 chr3R 6862306 6862351 12 105 3.5 3.5 3.5 2.7 139 chr3R 6862212 intergenic not near genes chr3R 6862282 intergenic not near genes chr3R 6862351 intergenic not near genes chr3R_12_6860001 chr3R_6860001 RAL-461 1655 chr3R 6918044 6918092 chr3R 6918142 6918190 11 94 3.0 3.0 3.0 2.8 146 chr3R 6918044 intron Antp - chr3R 6918117 intron Antp - chr3R 6918190 intron Antp - chr3R_11_6915001 chr3R_6915001 RAL-461 1656 chr3R 6990452 6990490 chr3R 6990562 6990600 18 107 0.5 2.0 1.2 8.2 148 chr3R 6990452 intron Antp - chr3R 6990526 intron Antp - chr3R 6990600 intron Antp - chr3R_18_6990001 chr3R_6990001 RAL-461 1657 chr3R 6991159 6991195 chr3R 6991255 6991291 6 92 3.0 2.0 2.5 1.7 132 chr3R 6991159 intron Antp - chr3R 6991225 intron Antp - chr3R 6991291 intron Antp - chr3R_6_6990001 chr3R_6990001 RAL-461 1658 chr3R 7026843 7026885 chr3R 7026944 7026980 6 98 5.0 2.5 3.8 1.2 137 chr3R 7026843 intergenic not near genes chr3R 7026912 intergenic not near genes chr3R 7026980 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-461 1659 chr3R 7036740 7036781 chr3R 7036839 7036873 7 91 4.0 1.5 2.8 1.8 133 chr3R 7036740 intergenic not near genes chr3R 7036806 intergenic not near genes chr3R 7036873 intergenic not near genes chr3R_7_7035001 chr3R_7035001 RAL-461 1660 chr3R 7060234 7060288 chr3R 7060335 7060355 14 92 2.0 1.5 1.8 5.0 121 chr3R 7060234 3` UTR dj + chr3R 7060294 3` UTR dj + chr3R 7060355 3` UTR dj + chr3R_14_7060001 chr3R_7060001 RAL-461 1661 chr3R 7092771 7092817 chr3R 7093346 7093394 17 580 2.5 5.0 3.8 3.5 623 chr3R 7092771 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093394 3` UTR CR43685 - chr3R_17_7090001 chr3R_7090001 RAL-461 1662 chr3R 7103279 7103304 chr3R 7103359 7103395 7 89 6.0 4.0 5.0 1.2 116 chr3R 7103279 intron Alh - chr3R 7103337 intron Alh - chr3R 7103395 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-461 1663 chr3R 7126493 7126524 chr3R 7126598 7126629 11 111 4.5 5.0 4.8 1.9 136 chr3R 7126493 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126561 3` UTR CG10068 - chr3R 7126629 3` UTR CG10068 - chr3R_11_7125001 chr3R_7125001 RAL-461 1664 chr3R 7173664 7173701 chr3R 7173764 7173786 15 98 4.0 4.5 4.2 2.9 122 chr3R 7173664 intron sas + chr3R 7173725 intron sas + chr3R 7173786 intron sas + chr3R_15_7170001 chr3R_7170001 RAL-461 1665 chr3R 7210575 7210620 chr3R 7210672 7210695 6 99 0.0 5.5 2.8 1.6 120 chr3R 7210575 intergenic not near genes chr3R 7210635 intergenic not near genes chr3R 7210695 intergenic not near genes chr3R_6_7210001 chr3R_7210001 RAL-461 1666 chr3R 7270917 7270967 chr3R 7271020 7271071 13 101 5.5 3.5 4.5 2.4 154 chr3R 7270917 intergenic Syt4 + chr3R 7270994 intergenic Syt4 + chr3R 7271071 intergenic Syt4 + chr3R_13_7270001 chr3R_7270001 RAL-461 1667 chr3R 7447977 7448006 chr3R 7448075 7448104 14 96 3.0 6.0 4.5 2.5 127 chr3R 7447977 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448104 intergenic not near genes chr3R_14_7445001 chr3R_7445001 RAL-461 1668 chr3R 7621551 7621558 chr3R 7621625 7621667 4 92 2.0 2.0 2.0 1.3 116 chr3R 7621551 intron CG34127 - chr3R 7621609 intron CG34127 - chr3R 7621667 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-461 1669 chr3R 7632741 7632776 chr3R 7632858 7632903 5 113 2.5 3.0 2.8 1.3 162 chr3R 7632741 intron CG34127 - chr3R 7632822 intron CG34127 - chr3R 7632903 intron CG34127 - chr3R_5_7630001 chr3R_7630001 RAL-461 1670 chr3R 7690327 7690379 chr3R 7690427 7690479 16 92 3.0 2.5 2.8 4.2 152 chr3R 7690327 intron Nlg1 + chr3R 7690403 intron Nlg1 + chr3R 7690479 intron Nlg1 + chr3R_16_7690001 chr3R_7690001 RAL-461 1671 chr3R 7694559 7694610 chr3R 7713640 7713691 invader3 22 19080 4.0 3.0 3.5 4.9 19132 chr3R 7694559 3` UTR Nlg1 + chr3R 7704125 intergenic not near genes chr3R 7713691 intergenic not near genes chr3R_22_7700001 chr3R_7700001 RAL-461 1672 chr3R 7729459 7729498 chr3R 7737407 7737453 Stalker2 11 7956 4.0 3.5 3.8 2.3 7994 chr3R 7729459 intergenic not near genes chr3R 7733456 intergenic not near genes chr3R 7737453 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-461 1673 chr3R 7760166 7760194 chr3R 7760648 7760683 4 487 18.0 18.5 18.2 0.2 517 chr3R 7760166 intron Sp7 + chr3R 7760424 intron Sp7 + chr3R 7760683 intron Sp7 + chr3R_4_7760001 chr3R_7760001 RAL-461 1674 chr3R 7819827 7819854 chr3R 7819945 7819949 8 125 2.5 3.5 3.0 2.0 122 chr3R 7819827 intron CG34384 + chr3R 7819888 intron CG34384 + chr3R 7819949 intron CG34384 + chr3R_8_7815001 chr3R_7815001 RAL-461 1675 chr3R 7773344 7773344 chr3R 7890532 7890535 4 117190 12.0 7.0 9.5 0.4 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_4_7830001 chr3R_7830001 RAL-461 1676 chr3R 7973307 7973314 chr3R 7974389 7974396 1360 5 1082 6.5 6.0 6.2 0.7 1089 chr3R 7973307 intergenic not near genes chr3R 7973852 intergenic not near genes chr3R 7974396 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-461 1677 chr3R 7987170 7987195 chr3R 7987279 7987304 9 108 5.5 4.5 5.0 1.5 134 chr3R 7987170 intron CG2781 - chr3R 7987237 intron CG2781 - chr3R 7987304 intron CG2781 - chr3R_9_7985001 chr3R_7985001 RAL-461 1678 chr3R 8090255 8090303 chr3R 8090452 8090493 17 196 4.0 4.0 4.0 3.4 238 chr3R 8090255 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090493 intergenic CR44330 + chr3R_17_8090001 chr3R_8090001 RAL-461 1679 chr3R 8090548 8090565 chr3R 8094045 8094061 297 7 3495 3.5 6.0 4.8 1.2 3513 chr3R 8090548 intergenic CR44330 + chr3R 8092304 intergenic not near genes chr3R 8094061 intergenic CG7900 + chr3R_7_8090001 chr3R_8090001 RAL-461 1680 chr3R 8094394 8094413 chr3R 8099719 8099728 Transpac 6 5322 5.0 4.5 4.8 1.0 5334 chr3R 8094394 intron CG7900 + chr3R 8097061 intron CG7900 + chr3R 8099728 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-461 1681 chr3R 8107395 8107417 chr3R 8107519 8107571 11 148 4.0 4.5 4.2 2.1 176 chr3R 8107395 intron puc + chr3R 8107483 intron puc + chr3R 8107571 intron puc + chr3R_11_8105001 chr3R_8105001 RAL-461 1682 chr3R 8273714 8273765 chr3R 8273821 8273872 11 102 2.5 5.5 4.0 2.2 158 chr3R 8273714 intergenic not near genes chr3R 8273793 intergenic not near genes chr3R 8273872 intergenic not near genes chr3R_11_8270001 chr3R_8270001 RAL-461 1683 chr3R 8339246 8339247 chr3R 21907534 21907536 17 13568288 9.0 19.5 14.2 1.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_17_15120001 chr3R_15120001 RAL-461 1684 chr3R 8403010 8403033 chr3R 8412178 8412214 roo 5 9181 4.5 2.5 3.5 1.1 9204 chr3R 8403010 intron CG45263 - chr3R 8407612 intron CG45263 - chr3R 8412214 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-461 1685 chr3R 8461281 8461306 chr3R 8461379 8461409 5 99 2.5 5.0 3.8 1.0 128 chr3R 8461281 intron CG45263 - chr3R 8461345 intron CG45263 - chr3R 8461409 intron CG45263 - chr3R_5_8460001 chr3R_8460001 RAL-461 1686 chr3R 8478062 8478107 chr3R 8478162 8478207 7 97 2.0 4.0 3.0 1.8 145 chr3R 8478062 intergenic CG45263 - chr3R 8478134 intergenic not near genes chr3R 8478207 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-461 1687 chr3R 8570489 8570506 chr3R 8575133 8575155 HMS-Beagle 8 4652 3.5 8.0 5.8 1.2 4666 chr3R 8570489 intergenic not near genes chr3R 8572822 intergenic not near genes chr3R 8575155 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-461 1688 chr3R 8601756 8601798 chr3R 8610929 8610950 roo 4 9158 5.5 4.0 4.8 0.7 9194 chr3R 8601756 intron 5-HT2B + chr3R 8606353 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-461 1689 chr3R 8614797 8614819 chr3R 8614987 8615002 7 195 0.5 5.0 2.8 1.8 205 chr3R 8614797 intron 5-HT2B + chr3R 8614900 intron 5-HT2B + chr3R 8615002 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-461 1690 chr3R 8621527 8621567 chr3R 8621624 8621624 4 78 3.5 4.5 4.0 0.8 97 chr3R 8621527 intron 5-HT2B + chr3R 8621576 intron 5-HT2B + chr3R 8621624 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-461 1691 chr3R 8642435 8642449 chr3R 8642507 8642526 6 75 0.5 5.0 2.8 1.6 91 chr3R 8642435 intergenic not near genes chr3R 8642480 intergenic not near genes chr3R 8642526 intergenic not near genes chr3R_6_8640001 chr3R_8640001 RAL-461 1692 chr3R 8707335 8707375 chr3R 8709796 8709810 jockey 7 2453 0.5 3.5 2.0 2.3 2475 chr3R 8707335 intergenic not near genes chr3R 8708572 intergenic not near genes chr3R 8709810 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-461 1693 chr3R 8798630 8798686 chr3R 8798733 8798789 13 99 2.0 4.5 3.2 3.1 159 chr3R 8798630 intron,intron Pif1A -,Pif1B - chr3R 8798710 intron,intron Pif1A -,Pif1B - chr3R 8798789 intron,intron Pif1A -,Pif1B - chr3R_13_8795001 chr3R_8795001 RAL-461 1694 chr3R 9014760 9014796 chr3R 9014857 9014895 9 96 4.0 3.0 3.5 2.0 135 chr3R 9014760 intron CG11984 - chr3R 9014828 intron CG11984 - chr3R 9014895 5` UTR CG11984 - chr3R_9_9010001 chr3R_9010001 RAL-461 1695 chr3R 9082034 9082072 chr3R 9082137 9082181 5 108 2.0 3.0 2.5 1.4 147 chr3R 9082034 intron pum - chr3R 9082108 intron pum - chr3R 9082181 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-461 1696 chr3R 9087311 9087349 chr3R 9087394 9087420 10 86 3.0 3.5 3.2 2.4 109 chr3R 9087311 intron pum - chr3R 9087366 intron pum - chr3R 9087420 intron pum - chr3R_10_9085001 chr3R_9085001 RAL-461 1697 chr3R 9099439 9099479 chr3R 9099543 9099582 10 100 1.0 4.0 2.5 2.9 143 chr3R 9099439 intron pum - chr3R 9099510 intron pum - chr3R 9099582 intron pum - chr3R_10_9095001 chr3R_9095001 RAL-461 1698 chr3R 9101822 9101872 chr3R 9101936 9101980 15 114 1.5 4.0 2.8 3.9 158 chr3R 9101822 intron pum - chr3R 9101901 intron pum - chr3R 9101980 intron pum - chr3R_15_9100001 chr3R_9100001 RAL-461 1699 chr3R 9108848 9108884 chr3R 9108944 9108980 11 96 5.5 3.0 4.2 2.1 132 chr3R 9108848 intron pum - chr3R 9108914 intron pum - chr3R 9108980 intron pum - chr3R_11_9105001 chr3R_9105001 RAL-461 1700 chr3R 9204228 9204277 chr3R 9204335 9204343 12 100 3.5 2.5 3.0 3.0 115 chr3R 9204228 intron pum - chr3R 9204286 intron pum - chr3R 9204343 intron pum - chr3R_12_9200001 chr3R_9200001 RAL-461 1701 chr3R 9278770 9278813 chr3R 9284041 9284069 Rt1a 13 5268 0.5 3.0 1.8 4.6 5299 chr3R 9278770 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284069 intergenic not near genes chr3R_13_9280001 chr3R_9280001 RAL-461 1702 chr3R 9304515 9304560 chr3R 9311817 9311822 Stalker4 5 7295 7.5 1.5 4.5 0.9 7307 chr3R 9304515 intron CG8861 - chr3R 9308168 intron CG8861 - chr3R 9311822 intron CG8861 - chr3R_5_9305001 chr3R_9305001 RAL-461 1703 chr3R 9319562 9319600 chr3R 9320017 9320055 jockey 10 453 9.0 5.0 7.0 1.2 493 chr3R 9319562 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320055 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-461 1704 chr3R 9350492 9350501 chr3R 9350593 9350602 4 101 9.5 3.5 6.5 0.5 110 chr3R 9350492 intron CG45050 + chr3R 9350547 intron CG45050 + chr3R 9350602 intron CG45050 + chr3R_4_9350001 chr3R_9350001 RAL-461 1705 chr3R 9350502 9350522 chr3R 9350588 9350615 7 98 5.5 3.0 4.2 1.3 113 chr3R 9350502 intron CG45050 + chr3R 9350558 intron CG45050 + chr3R 9350615 intron CG45050 + chr3R_7_9350001 chr3R_9350001 RAL-461 1706 chr3R 9350523 9350532 chr3R 9350583 9350633 6 92 3.5 3.0 3.2 1.4 110 chr3R 9350523 intron CG45050 + chr3R 9350578 intron CG45050 + chr3R 9350633 intron CG45050 + chr3R_6_9350001 chr3R_9350001 RAL-461 1707 chr3R 9361807 9361841 chr3R 9362057 9362102 pogo 12 258 3.5 6.0 4.8 2.1 295 chr3R 9361807 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362102 3` UTR CG45050 + chr3R_12_9360001 chr3R_9360001 RAL-461 1708 chr3R 9362962 9362968 chr3R 9363071 9363077 5 109 11.5 7.0 9.2 0.5 115 chr3R 9362962 3` UTR CG45050 + chr3R 9363020 intergenic CG45050 +,CG18473 + chr3R 9363077 intergenic CG45050 +,CG18473 + chr3R_5_9360001 chr3R_9360001 RAL-461 1709 chr3R 9362974 9363008 chr3R 9363068 9363117 10 103 5.0 6.5 5.8 1.5 143 chr3R 9362974 3` UTR CG45050 + chr3R 9363046 intergenic CG45050 +,CG18473 + chr3R 9363117 intergenic CG45050 +,CG18473 + chr3R_10_9360001 chr3R_9360001 RAL-461 1710 chr3R 9379157 9379168 chr3R 9379254 9379270 6 101 0.0 3.5 1.8 2.1 113 chr3R 9379157 intron FER - chr3R 9379214 intron FER - chr3R 9379270 intron FER - chr3R_6_9375001 chr3R_9375001 RAL-461 1711 chr3R 9434678 9434716 chr3R 9434785 9434796 8 100 2.0 4.0 3.0 2.0 118 chr3R 9434678 intron ps + chr3R 9434737 intron ps + chr3R 9434796 intron ps + chr3R_8_9430001 chr3R_9430001 RAL-461 1712 chr3R 9586676 9586722 chr3R 9586788 9586834 8 107 2.5 1.5 2.0 2.7 158 chr3R 9586676 intergenic CG8301 +,P58IPK + chr3R 9586755 intergenic CG8301 +,P58IPK + chr3R 9586834 intergenic P58IPK +,CG8301 + chr3R_8_9585001 chr3R_9585001 RAL-461 1713 chr3R 9601443 9601490 chr3R 9601581 9601628 9 137 1.5 4.0 2.8 2.4 185 chr3R 9601443 intron CG8312 + chr3R 9601536 intron CG8312 + chr3R 9601628 intron CG8312 + chr3R_9_9600001 chr3R_9600001 RAL-461 1714 chr3R 9610830 9610864 chr3R 9610992 9611021 4 160 2.0 2.0 2.0 1.3 191 chr3R 9610830 intron CG8312 + chr3R 9610926 intron CG8312 + chr3R 9611021 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-461 1715 chr3R 9702255 9702288 chr3R 9702337 9702358 7 86 7.5 2.0 4.8 1.2 103 chr3R 9702255 intron Unc-115a - chr3R 9702306 intron Unc-115a - chr3R 9702358 intron Unc-115a - chr3R_7_9700001 chr3R_9700001 RAL-461 1716 chr3R 9858665 9858695 chr3R 9858784 9858809 8 118 4.5 4.0 4.2 1.5 144 chr3R 9858665 intron Teh1 - chr3R 9858737 intron Teh1 - chr3R 9858809 intron Teh1 - chr3R_8_9855001 chr3R_9855001 RAL-461 1717 chr3R 10231775 10231813 chr3R 10237372 10237384 mdg3 10 5594 4.0 7.0 5.5 1.5 5609 chr3R 10231775 intron CG42795 + chr3R 10234580 intron CG42795 + chr3R 10237384 intron CG42795 + chr3R_10_10230001 chr3R_10230001 RAL-461 1718 chr3R 10255362 10255382 chr3R 10260822 10260840 I-element 5 5460 8.5 2.5 5.5 0.8 5478 chr3R 10255362 3` UTR Sirt6 - chr3R 10258101 intron Sirt6 - chr3R 10260840 exon Sirt6 - chr3R_5_10255001 chr3R_10255001 RAL-461 1719 chr3R 10306970 10306981 chr3R 10312209 10312220 6 5240 17.5 33.0 25.2 0.2 5250 chr3R 10306970 exon CG43143 + chr3R 10309595 exon CG6293 - chr3R 10312220 3` UTR Bruce - chr3R_6_10305001 chr3R_10305001 RAL-461 1720 chr3R 10306962 10306987 chr3R 10312221 10312238 8 5245 19.0 30.0 24.5 0.3 5276 chr3R 10306962 exon CG43143 + chr3R 10309600 exon CG6293 - chr3R 10312238 3` UTR Bruce - chr3R_8_10305001 chr3R_10305001 RAL-461 1721 chr3R 10394057 10394101 chr3R 10394166 10394210 15 114 6.0 6.0 6.0 2.1 153 chr3R 10394057 intron cwo + chr3R 10394134 intron cwo + chr3R 10394210 intron cwo + chr3R_15_10390001 chr3R_10390001 RAL-461 1722 chr3R 10430654 10430695 chr3R 10430763 10430804 8 107 3.0 6.5 4.8 1.4 150 chr3R 10430654 intergenic not near genes chr3R 10430729 intergenic not near genes chr3R 10430804 intergenic not near genes chr3R_8_10430001 chr3R_10430001 RAL-461 1723 chr3R 10526292 10526310 chr3R 10526570 10526593 5 282 0.0 2.0 1.0 2.5 301 chr3R 10526292 intron hth - chr3R 10526442 intron hth - chr3R 10526593 intron hth - chr3R_5_10525001 chr3R_10525001 RAL-461 1724 chr3R 10651798 10651832 chr3R 10651917 10651930 10 114 8.0 3.0 5.5 1.5 132 chr3R 10651798 intergenic not near genes chr3R 10651864 intergenic not near genes chr3R 10651930 intergenic not near genes chr3R_10_10650001 chr3R_10650001 RAL-461 1725 chr3R 10723749 10723791 chr3R 10723861 10723894 19 109 3.0 1.0 2.0 6.3 145 chr3R 10723749 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723894 intergenic not near genes chr3R_19_10720001 chr3R_10720001 RAL-461 1726 chr3R 10727626 10727673 chr3R 10727726 10727747 7 82 3.5 3.0 3.2 1.7 121 chr3R 10727626 intergenic not near genes chr3R 10727686 intergenic not near genes chr3R 10727747 intergenic not near genes chr3R_7_10725001 chr3R_10725001 RAL-461 1727 chr3R 10732308 10732322 chr3R 10733200 10733214 5 892 8.5 6.0 7.2 0.6 906 chr3R 10732308 intergenic not near genes chr3R 10732761 intergenic not near genes chr3R 10733214 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-461 1728 chr3R 10732324 10732338 chr3R 10733197 10733218 6 884 6.0 5.0 5.5 0.9 894 chr3R 10732324 intergenic not near genes chr3R 10732771 intergenic not near genes chr3R 10733218 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-461 1729 chr3R 10904888 10904932 chr3R 10905112 10905130 12 220 5.5 3.0 4.2 2.3 242 chr3R 10904888 intergenic not near genes chr3R 10905009 intergenic not near genes chr3R 10905130 intergenic not near genes chr3R_12_10905001 chr3R_10905001 RAL-461 1730 chr3R 10906813 10906851 chr3R 10906909 10906922 6 90 1.5 3.0 2.2 1.9 109 chr3R 10906813 intergenic not near genes chr3R 10906868 intergenic not near genes chr3R 10906922 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-461 1731 chr3R 10919665 10919718 chr3R 10919763 10919769 12 94 5.0 2.0 3.5 2.7 104 chr3R 10919665 intergenic not near genes chr3R 10919717 intergenic not near genes chr3R 10919769 intergenic not near genes chr3R_12_10915001 chr3R_10915001 RAL-461 1732 chr3R 10920031 10920075 chr3R 10920129 10920170 9 94 2.0 5.0 3.5 2.0 139 chr3R 10920031 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920170 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-461 1733 chr3R 10971466 10971507 chr3R 10971576 10971618 6 108 4.0 4.0 4.0 1.2 152 chr3R 10971466 intergenic not near genes chr3R 10971542 intergenic not near genes chr3R 10971618 intergenic not near genes chr3R_6_10970001 chr3R_10970001 RAL-461 1734 chr3R 11043102 11043122 chr3R 11043200 11043228 9 109 0.5 3.5 2.0 3.0 126 chr3R 11043102 intron CG34114 + chr3R 11043165 intron CG34114 + chr3R 11043228 intron CG34114 + chr3R_9_11040001 chr3R_11040001 RAL-461 1735 chr3R 11056875 11056909 chr3R 11056973 11057001 5 97 3.5 0.0 1.8 1.8 126 chr3R 11056875 intergenic not near genes chr3R 11056938 intergenic not near genes chr3R 11057001 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-461 1736 chr3R 11087441 11087464 chr3R 11087521 11087558 4 86 6.0 2.5 4.2 0.8 117 chr3R 11087441 intergenic not near genes chr3R 11087500 intergenic not near genes chr3R 11087558 intergenic not near genes chr3R_4_11085001 chr3R_11085001 RAL-461 1737 chr3R 11102319 11102349 chr3R 11102420 11102428 5 89 4.5 5.0 4.8 0.9 109 chr3R 11102319 intergenic not near genes chr3R 11102374 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-461 1738 chr3R 11197966 11198011 chr3R 11198085 11198130 12 114 5.5 1.0 3.2 2.9 164 chr3R 11197966 intron cu + chr3R 11198048 intron cu + chr3R 11198130 intron cu + chr3R_12_11195001 chr3R_11195001 RAL-461 1739 chr3R 11220283 11220311 chr3R 11220403 11220437 7 126 4.0 3.0 3.5 1.6 154 chr3R 11220283 3` UTR CG6693 - chr3R 11220360 3` UTR CG6693 - chr3R 11220437 3` UTR CG6693 - chr3R_7_11220001 chr3R_11220001 RAL-461 1740 chr3R 11342521 11342572 chr3R 11342617 11342668 13 94 2.5 1.0 1.8 4.6 147 chr3R 11342521 intron pros + chr3R 11342594 intron pros + chr3R 11342668 intron pros + chr3R_13_11340001 chr3R_11340001 RAL-461 1741 chr3R 11379217 11379265 chr3R 11388392 11388420 roo 12 9169 6.0 3.5 4.8 2.1 9203 chr3R 11379217 intron pros + chr3R 11383818 intron pros + chr3R 11388420 intron pros + chr3R_12_11380001 chr3R_11380001 RAL-461 1742 chr3R 11471208 11471253 chr3R 15095973 15095979 5 3624757 3.0 21.0 12.0 0.4 3624771 chr3R 11471208 intergenic not near genes chr3R 13283594 exon CG8630 + chr3R 15095979 3` UTR CG42788 - chr3R_5_13280001 chr3R_13280001 RAL-461 1743 chr3R 11518802 11518840 chr3R 11518913 11518951 8 108 8.5 3.5 6.0 1.1 149 chr3R 11518802 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518951 intergenic not near genes chr3R_8_11515001 chr3R_11515001 RAL-461 1744 chr3R 11664776 11664816 chr3R 11664883 11664893 14 107 8.0 0.0 4.0 2.8 117 chr3R 11664776 intron CG42327 + chr3R 11664834 intron CG42327 + chr3R 11664893 intron CG42327 + chr3R_14_11660001 chr3R_11660001 RAL-461 1745 chr3R 11694717 11694748 chr3R 11694820 11694861 12 107 7.5 4.0 5.8 1.8 144 chr3R 11694717 intergenic Fer3 - chr3R 11694789 intergenic Fer3 - chr3R 11694861 intergenic not near genes chr3R_12_11690001 chr3R_11690001 RAL-461 1746 chr3R 11734188 11734190 chr3R 11734282 11734329 4 121 1.0 3.0 2.0 1.3 141 chr3R 11734188 intergenic not near genes chr3R 11734258 intergenic not near genes chr3R 11734329 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-461 1747 chr3R 11740434 11740479 chr3R 11743521 11743573 32 3092 38.0 39.0 38.5 0.8 3139 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743573 exon CG14722 + chr3R_32_11740001 chr3R_11740001 RAL-461 1748 chr3R 11780050 11780083 chr3R 11780279 11780313 9 243 3.5 2.5 3.0 2.2 263 chr3R 11780050 intergenic not near genes chr3R 11780182 intergenic CR45595 + chr3R 11780313 intergenic CR45595 + chr3R_9_11780001 chr3R_11780001 RAL-461 1749 chr3R 11830336 11830359 chr3R 11830440 11830463 5 104 1.5 4.0 2.8 1.3 127 chr3R 11830336 intron CG6959 - chr3R 11830400 intron CG6959 - chr3R 11830463 intron CG6959 - chr3R_5_11830001 chr3R_11830001 RAL-461 1750 chr3R 11841047 11841085 chr3R 11846253 11846274 BS 4 5194 2.0 2.5 2.2 1.2 5227 chr3R 11841047 intron CG6959 - chr3R 11843660 intron CG6959 - chr3R 11846274 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-461 1751 chr3R 11853434 11853471 chr3R 11853603 11853633 9 164 0.5 11.0 5.8 1.3 199 chr3R 11853434 intron CG6959 - chr3R 11853534 intron CG6959 - chr3R 11853633 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-461 1752 chr3R 11853753 11853802 chr3R 11853878 11853916 15 122 5.0 4.5 4.8 2.6 163 chr3R 11853753 intron CG6959 - chr3R 11853834 intron CG6959 - chr3R 11853916 intron CG6959 - chr3R_15_11850001 chr3R_11850001 RAL-461 1753 chr3R 11916420 11916453 chr3R 11916512 11916552 8 95 5.0 3.5 4.2 1.5 132 chr3R 11916420 intron Cad87A - chr3R 11916486 intron Cad87A - chr3R 11916552 intron Cad87A - chr3R_8_11915001 chr3R_11915001 RAL-461 1754 chr3R 12022879 12022912 chr3R 12025076 12025108 pogo 7 2196 3.5 6.0 4.8 1.2 2229 chr3R 12022879 intergenic not near genes chr3R 12023994 intergenic not near genes chr3R 12025108 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-461 1755 chr3R 12045154 12045174 chr3R 12045250 12045269 6 96 5.0 3.5 4.2 1.2 115 chr3R 12045154 intergenic not near genes chr3R 12045212 intergenic not near genes chr3R 12045269 intergenic not near genes chr3R_6_12045001 chr3R_12045001 RAL-461 1756 chr3R 12165853 12165897 chr3R 12165951 12165995 15 95 2.5 4.5 3.5 3.3 142 chr3R 12165853 intron Cpn - chr3R 12165924 intron Cpn - chr3R 12165995 intron Cpn - chr3R_15_12165001 chr3R_12165001 RAL-461 1757 chr3R 12267839 12267889 chr3R 12267939 12267989 18 98 2.5 2.5 2.5 5.1 150 chr3R 12267839 intron svp + chr3R 12267914 intron svp + chr3R 12267989 intron svp + chr3R_18_12265001 chr3R_12265001 RAL-461 1758 chr3R 12364743 12364791 chr3R 12364854 12364902 8 110 1.5 3.0 2.2 2.5 159 chr3R 12364743 intergenic GstD10 -,Tim17a1 - chr3R 12364822 3` UTR GstD10 - chr3R 12364902 3` UTR GstD10 - chr3R_8_12360001 chr3R_12360001 RAL-461 1759 chr3R 12406495 12406513 chr3R 12406584 12406617 13 97 7.5 3.5 5.5 2.0 122 chr3R 12406495 intergenic CG5167 +,Cyp9f2 - chr3R 12406556 5` UTR CG5167 + chr3R 12406617 5` UTR CG5167 + chr3R_13_12405001 chr3R_12405001 RAL-461 1760 chr3R 12685403 12685450 chr3R 12685591 12685643 13 191 4.0 5.5 4.8 2.2 240 chr3R 12685403 intron kar - chr3R 12685523 intron kar - chr3R 12685643 intron kar - chr3R_13_12685001 chr3R_12685001 RAL-461 1761 chr3R 12733462 12733490 chr3R 12733553 12733561 4 85 5.0 4.0 4.5 0.7 99 chr3R 12733462 intergenic not near genes chr3R 12733512 intergenic not near genes chr3R 12733561 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-461 1762 chr3R 12739017 12739068 chr3R 12739113 12739164 14 95 5.0 4.5 4.8 2.4 147 chr3R 12739017 intergenic not near genes chr3R 12739090 intergenic not near genes chr3R 12739164 intergenic CG5724 + chr3R_14_12735001 chr3R_12735001 RAL-461 1763 chr3R 12787919 12787950 chr3R 12788022 12788053 12 101 7.0 2.0 4.5 2.2 134 chr3R 12787919 intergenic not near genes chr3R 12787986 intergenic not near genes chr3R 12788053 intergenic not near genes chr3R_12_12785001 chr3R_12785001 RAL-461 1764 chr3R 12858447 12858489 chr3R 12859475 12859523 11 1032 2.0 5.0 3.5 2.4 1076 chr3R 12858447 intron CG10126 - chr3R 12858985 intron CG10126 - chr3R 12859523 intergenic CG10126 - chr3R_11_12855001 chr3R_12855001 RAL-461 1765 chr3R 12864551 12864593 chr3R 12865046 12865098 roo 8 503 0.5 1.5 1.0 4.0 547 chr3R 12864551 intergenic not near genes chr3R 12864824 intergenic not near genes chr3R 12865098 intergenic not near genes chr3R_8_12860001 chr3R_12860001 RAL-461 1766 chr3R 12886909 12886950 chr3R 12887014 12887055 6 105 1.5 4.0 2.8 1.6 146 chr3R 12886909 intergenic not near genes chr3R 12886982 intergenic not near genes chr3R 12887055 intergenic not near genes chr3R_6_12885001 chr3R_12885001 RAL-461 1767 chr3R 12920182 12920184 chr3R 12925357 12925400 copia 4 5196 1.0 4.0 2.5 1.1 5218 chr3R 12920182 intron beat-Vb + chr3R 12922791 intron beat-Vb + chr3R 12925400 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-461 1768 chr3R 12941929 12941939 chr3R 12942007 12942051 6 97 3.5 3.0 3.2 1.4 122 chr3R 12941929 intergenic not near genes chr3R 12941990 intergenic not near genes chr3R 12942051 intergenic not near genes chr3R_6_12940001 chr3R_12940001 RAL-461 1769 chr3R 12942636 12942687 chr3R 12942758 12942809 10 120 3.0 2.0 2.5 2.9 173 chr3R 12942636 intergenic not near genes chr3R 12942722 intergenic not near genes chr3R 12942809 intergenic not near genes chr3R_10_12940001 chr3R_12940001 RAL-461 1770 chr3R 12943957 12944008 chr3R 12944064 12944115 8 104 2.0 2.5 2.2 2.5 158 chr3R 12943957 intergenic not near genes chr3R 12944036 intergenic not near genes chr3R 12944115 intergenic not near genes chr3R_8_12940001 chr3R_12940001 RAL-461 1771 chr3R 13064762 13064773 chr3R 13064869 13064891 4 115 0.5 0.0 0.2 3.3 129 chr3R 13064762 intron sim + chr3R 13064826 intron sim + chr3R 13064891 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-461 1772 chr3R 13066986 13067129 chr3R 13067093 13067225 14 99 0.0 0.5 0.2 11.7 239 chr3R 13066986 intron sim + chr3R 13067106 intron sim + chr3R 13067225 intron sim + chr3R_14_13065001 chr3R_13065001 RAL-461 1773 chr3R 13120750 13120789 chr3R 13120847 13120861 5 86 2.5 0.5 1.5 2.0 111 chr3R 13120750 intron timeout + chr3R 13120806 intron timeout + chr3R 13120861 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-461 1774 chr3R 13174532 13174567 chr3R 13174649 13174694 7 120 4.0 4.0 4.0 1.4 162 chr3R 13174532 intergenic not near genes chr3R 13174613 intergenic not near genes chr3R 13174694 intergenic not near genes chr3R_7_13170001 chr3R_13170001 RAL-461 1775 chr3R 13195934 13195954 chr3R 13196049 13196069 4 115 7.5 1.5 4.5 0.7 135 chr3R 13195934 intergenic not near genes chr3R 13196002 intergenic not near genes chr3R 13196069 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-461 1776 chr3R 13195955 13195982 chr3R 13196046 13196077 6 99 3.0 1.5 2.2 1.9 122 chr3R 13195955 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_6_13195001 chr3R_13195001 RAL-461 1777 chr3R 13197154 13197200 chr3R 13198454 13198476 5 1295 6.0 22.0 14.0 0.3 1322 chr3R 13197154 intergenic not near genes chr3R 13197815 intergenic not near genes chr3R 13198476 intergenic not near genes chr3R_5_13195001 chr3R_13195001 RAL-461 1778 chr3R 13197025 13197056 chr3R 13198475 13198506 10 1451 12.0 21.5 16.8 0.6 1481 chr3R 13197025 intergenic not near genes chr3R 13197766 intergenic not near genes chr3R 13198506 intergenic not near genes chr3R_10_13195001 chr3R_13195001 RAL-461 1779 chr3R 13248631 13248680 chr3R 13248750 13248799 22 117 4.0 2.0 3.0 5.5 168 chr3R 13248631 intron Ace - chr3R 13248715 intron Ace - chr3R 13248799 intron Ace - chr3R_22_13245001 chr3R_13245001 RAL-461 1780 chr3R 13305641 13305691 chr3R 13305748 13305769 23 104 2.0 4.0 3.0 5.8 128 chr3R 13305641 intron CG32473 + chr3R 13305705 intron CG32473 + chr3R 13305769 intron CG32473 + chr3R_23_13305001 chr3R_13305001 RAL-461 1781 chr3R 13306103 13306152 chr3R 13306510 13306559 10 402 4.0 9.0 6.5 1.3 456 chr3R 13306103 intron CG32473 + chr3R 13306331 intron CG32473 + chr3R 13306559 intron CG32473 + chr3R_10_13305001 chr3R_13305001 RAL-461 1782 chr3R 13314101 13314133 chr3R 13318884 13318890 Doc 11 4795 3.0 6.5 4.8 1.9 4789 chr3R 13314101 intergenic not near genes chr3R 13316496 intergenic not near genes chr3R 13318890 intergenic CG45080 - chr3R_11_13315001 chr3R_13315001 RAL-461 1783 chr3R 13323936 13323983 chr3R 13324067 13324105 8 128 3.0 1.5 2.2 2.5 169 chr3R 13323936 intergenic not near genes chr3R 13324020 intergenic not near genes chr3R 13324105 intergenic not near genes chr3R_8_13320001 chr3R_13320001 RAL-461 1784 chr3R 13326918 13326956 chr3R 13327033 13327051 6 108 2.5 2.0 2.2 1.9 133 chr3R 13326918 intergenic not near genes chr3R 13326984 intergenic not near genes chr3R 13327051 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-461 1785 chr3R 13343342 13343359 chr3R 13343500 13343505 6 154 6.5 3.5 5.0 1.0 163 chr3R 13343342 intron PK2-R1 + chr3R 13343424 intron PK2-R1 + chr3R 13343505 intron PK2-R1 + chr3R_6_13340001 chr3R_13340001 RAL-461 1786 chr3R 13356074 13356088 chr3R 13356179 13356193 5 105 5.0 2.0 3.5 1.1 119 chr3R 13356074 intergenic not near genes chr3R 13356134 intergenic not near genes chr3R 13356193 intergenic not near genes chr3R_5_13355001 chr3R_13355001 RAL-461 1787 chr3R 13356092 13356117 chr3R 13356176 13356222 10 101 4.0 1.5 2.8 2.6 130 chr3R 13356092 intergenic not near genes chr3R 13356157 intergenic not near genes chr3R 13356222 intergenic not near genes chr3R_10_13355001 chr3R_13355001 RAL-461 1788 chr3R 13456355 13456402 chr3R 13456464 13456492 14 104 2.5 5.0 3.8 2.9 137 chr3R 13456355 intron,intron CG14372 +,CR17025 - chr3R 13456424 intron,intron CG14372 +,CR17025 - chr3R 13456492 intron,intron CG14372 +,CR17025 - chr3R_14_13455001 chr3R_13455001 RAL-461 1789 chr3R 13496609 13496663 chr3R 13496708 13496762 11 96 6.0 2.5 4.2 2.1 153 chr3R 13496609 intergenic not near genes chr3R 13496686 intergenic not near genes chr3R 13496762 intergenic not near genes chr3R_11_13495001 chr3R_13495001 RAL-461 1790 chr3R 13517214 13517251 chr3R 13520046 13520088 jockey 4 2836 1.5 0.0 0.8 2.2 2874 chr3R 13517214 intergenic not near genes chr3R 13518651 intergenic not near genes chr3R 13520088 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-461 1791 chr3R 13599208 13599241 chr3R 13599339 13599356 7 124 2.0 6.5 4.2 1.3 148 chr3R 13599208 intergenic not near genes chr3R 13599282 intergenic not near genes chr3R 13599356 intergenic not near genes chr3R_7_13595001 chr3R_13595001 RAL-461 1792 chr3R 13603036 13603061 chr3R 13603147 13603166 9 108 4.5 3.5 4.0 1.8 130 chr3R 13603036 intergenic not near genes chr3R 13603101 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_9_13600001 chr3R_13600001 RAL-461 1793 chr3R 13625675 13625721 chr3R 13625776 13625822 8 98 3.5 6.5 5.0 1.3 147 chr3R 13625675 intergenic not near genes chr3R 13625748 intergenic not near genes chr3R 13625822 intergenic not near genes chr3R_8_13625001 chr3R_13625001 RAL-461 1794 chr3R 13659718 13659838 chr3R 13659844 13659937 6 110 0.0 0.0 0.0 6.0 219 chr3R 13659718 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659937 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-461 1795 chr3R 13672930 13672964 chr3R 13673021 13673052 11 95 2.0 3.5 2.8 2.9 122 chr3R 13672930 intron Task6 - chr3R 13672991 intron Task6 - chr3R 13673052 intron Task6 - chr3R_11_13670001 chr3R_13670001 RAL-461 1796 chr3R 13758138 13758167 chr3R 13758234 13758273 7 104 0.0 2.5 1.2 3.2 135 chr3R 13758138 intron CG34383 + chr3R 13758206 intron CG34383 + chr3R 13758273 intron CG34383 + chr3R_7_13755001 chr3R_13755001 RAL-461 1797 chr3R 13765220 13765266 chr3R 13765353 13765400 10 132 2.5 0.5 1.5 4.0 180 chr3R 13765220 intergenic not near genes chr3R 13765310 intergenic CG9312 + chr3R 13765400 intergenic CG9312 + chr3R_10_13765001 chr3R_13765001 RAL-461 1798 chr3R 13828837 13828865 chr3R 13828933 13828945 9 97 4.0 3.0 3.5 2.0 108 chr3R 13828837 intergenic CR43300 + chr3R 13828891 intergenic CR43300 + chr3R 13828945 intergenic not near genes chr3R_9_13825001 chr3R_13825001 RAL-461 1799 chr3R 13835569 13835622 chr3R 13835681 13835734 9 110 0.0 1.0 0.5 6.0 165 chr3R 13835569 intron Nsf2 - chr3R 13835652 intron Nsf2 - chr3R 13835734 intron Nsf2 - chr3R_9_13835001 chr3R_13835001 RAL-461 1800 chr3R 13853969 13853986 chr3R 13854033 13854086 4 81 4.0 0.5 2.2 1.2 117 chr3R 13853969 intergenic not near genes chr3R 13854028 intergenic not near genes chr3R 13854086 intergenic not near genes chr3R_4_13850001 chr3R_13850001 RAL-461 1801 chr3R 13975360 13975403 chr3R 13975454 13975503 9 96 4.5 1.0 2.8 2.4 143 chr3R 13975360 intron rdx - chr3R 13975432 intron rdx - chr3R 13975503 intron rdx - chr3R_9_13975001 chr3R_13975001 RAL-461 1802 chr3R 14021652 14021657 chr3R 14023487 14023494 S-element 4 1836 6.5 7.0 6.8 0.5 1842 chr3R 14021652 intron rdx - chr3R 14022573 intron rdx - chr3R 14023494 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-461 1803 chr3R 14021658 14021677 chr3R 14023474 14023514 S-element 8 1834 5.0 4.0 4.5 1.5 1856 chr3R 14021658 intron rdx - chr3R 14022586 intron rdx - chr3R 14023514 intron rdx - chr3R_8_14020001 chr3R_14020001 RAL-461 1804 chr3R 14058113 14058149 chr3R 14058252 14058289 15 136 3.0 2.5 2.8 3.9 176 chr3R 14058113 intron foxo + chr3R 14058201 intron foxo + chr3R 14058289 intron foxo + chr3R_15_14055001 chr3R_14055001 RAL-461 1805 chr3R 14117417 14117468 chr3R 14117513 14117564 20 95 5.5 5.0 5.2 3.2 147 chr3R 14117417 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117564 intron Kif19A - chr3R_20_14115001 chr3R_14115001 RAL-461 1806 chr3R 14180803 14180807 chr3R 14185588 14185592 F-element 4 4785 6.5 0.0 3.2 1.0 4789 chr3R 14180803 intron Dop1R1 - chr3R 14183198 intron Dop1R1 - chr3R 14185592 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-461 1807 chr3R 14180810 14180828 chr3R 14185583 14185584 F-element 6 4772 4.0 0.0 2.0 2.0 4774 chr3R 14180810 intron Dop1R1 - chr3R 14183197 intron Dop1R1 - chr3R 14185584 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-461 1808 chr3R 14194453 14194459 chr3R 14203598 14203604 roo 4 9145 3.5 2.5 3.0 1.0 9151 chr3R 14194453 intron Dop1R1 - chr3R 14199028 intron Dop1R1 - chr3R 14203604 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-461 1809 chr3R 14246375 14246414 chr3R 14247891 14247930 jockey 4 1507 1.5 4.0 2.8 1.1 1555 chr3R 14246375 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247930 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-461 1810 chr3R 14374438 14374472 chr3R 14374545 14374561 6 99 3.5 5.0 4.2 1.2 123 chr3R 14374438 intergenic not near genes chr3R 14374500 intergenic not near genes chr3R 14374561 intergenic not near genes chr3R_6_14370001 chr3R_14370001 RAL-461 1811 chr3R 14497384 14497430 chr3R 14497485 14497530 13 95 1.5 3.0 2.2 4.1 146 chr3R 14497384 intron CR44177 + chr3R 14497457 intron CR44177 + chr3R 14497530 intron CR44177 + chr3R_13_14495001 chr3R_14495001 RAL-461 1812 chr3R 14526318 14526354 chr3R 14526518 14526554 12 198 4.0 6.0 5.0 2.0 236 chr3R 14526318 intron Pde6 - chr3R 14526436 intron Pde6 - chr3R 14526554 intron Pde6 - chr3R_12_14525001 chr3R_14525001 RAL-461 1813 chr3R 14577939 14577985 chr3R 14578075 14578121 14 136 4.5 2.0 3.2 3.3 182 chr3R 14577939 intron stumps + chr3R 14578030 intron stumps + chr3R 14578121 intron stumps + chr3R_14_14575001 chr3R_14575001 RAL-461 1814 chr3R 14608442 14608476 chr3R 14608562 14608588 9 111 0.5 6.5 3.5 2.0 146 chr3R 14608442 intergenic stumps + chr3R 14608515 intergenic stumps + chr3R 14608588 intergenic not near genes chr3R_9_14605001 chr3R_14605001 RAL-461 1815 chr3R 14704368 14704416 chr3R 14704465 14704513 9 95 2.5 2.0 2.2 2.8 145 chr3R 14704368 intron kibra - chr3R 14704440 intron kibra - chr3R 14704513 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-461 1816 chr3R 14923692 14923741 chr3R 14923788 14923822 6 93 1.5 4.5 3.0 1.5 130 chr3R 14923692 3` UTR CR45598 - chr3R 14923757 3` UTR CR45598 - chr3R 14923822 intergenic CR45598 - chr3R_6_14920001 chr3R_14920001 RAL-461 1817 chr3R 14951744 14951779 chr3R 14952368 14952403 10 624 3.0 5.0 4.0 2.0 659 chr3R 14951744 intergenic not near genes chr3R 14952074 intergenic not near genes chr3R 14952403 intergenic not near genes chr3R_10_14950001 chr3R_14950001 RAL-461 1818 chr3R 15041409 15041453 chr3R 15045197 15045241 Doc 13 3785 5.0 3.5 4.2 2.5 3832 chr3R 15041409 intergenic not near genes chr3R 15043325 intergenic not near genes chr3R 15045241 intergenic not near genes chr3R_13_15040001 chr3R_15040001 RAL-461 1819 chr3R 15079788 15079839 chr3R 15080049 15080100 pogo 6 261 6.5 3.0 4.8 1.0 312 chr3R 15079788 3` UTR CG6966 - chr3R 15079944 3` UTR CG6966 - chr3R 15080100 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-461 1820 chr3R 15102483 15102521 chr3R 15109758 15109796 412 6 7270 5.5 6.0 5.8 0.9 7313 chr3R 15102483 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109796 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-461 1821 chr3R 15114898 15114934 chr3R 15114995 15115031 10 93 4.5 5.0 4.8 1.7 133 chr3R 15114898 intron CG42788 - chr3R 15114964 intron CG42788 - chr3R 15115031 intron CG42788 - chr3R_10_15110001 chr3R_15110001 RAL-461 1822 chr3R 15127779 15127808 chr3R 15127874 15127908 8 96 0.0 3.0 1.5 3.2 129 chr3R 15127779 intron CG42788 - chr3R 15127844 intron CG42788 - chr3R 15127908 intron CG42788 - chr3R_8_15125001 chr3R_15125001 RAL-461 1823 chr3R 15132045 15132062 chr3R 15135125 15135141 Juan 5 3080 8.0 6.5 7.2 0.6 3096 chr3R 15132045 intergenic CG42788 - chr3R 15133593 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-461 1824 chr3R 15132066 15132086 chr3R 15135116 15135166 Juan 5 3069 4.0 5.0 4.5 0.9 3100 chr3R 15132066 intergenic CG42788 - chr3R 15133616 intergenic not near genes chr3R 15135166 3` UTR CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-461 1825 chr3R 15156197 15156244 chr3R 15156364 15156411 6 162 3.5 0.5 2.0 2.0 214 chr3R 15156197 intron Gyc88E + chr3R 15156304 intron Gyc88E + chr3R 15156411 intron Gyc88E + chr3R_6_15155001 chr3R_15155001 RAL-461 1826 chr3R 15162551 15162570 chr3R 15167322 15167357 F-element 9 4779 8.0 7.5 7.8 1.0 4806 chr3R 15162551 intron Gyc88E + chr3R 15164954 intron Gyc88E + chr3R 15167357 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-461 1827 chr3R 15167807 15167838 chr3R 15167961 15168015 12 172 3.0 4.0 3.5 2.7 208 chr3R 15167807 intron Gyc88E + chr3R 15167911 intron Gyc88E + chr3R 15168015 intron Gyc88E + chr3R_12_15165001 chr3R_15165001 RAL-461 1828 chr3R 15190655 15190680 chr3R 15190775 15190820 11 142 4.5 4.0 4.2 2.1 165 chr3R 15190655 3` UTR Gyc88E + chr3R 15190738 3` UTR Gyc88E + chr3R 15190820 3` UTR Gyc88E + chr3R_11_15190001 chr3R_15190001 RAL-461 1829 chr3R 15320378 15320423 chr3R 15320631 15320686 21 258 2.0 2.0 2.0 7.0 308 chr3R 15320378 5` UTR CG44040 + chr3R 15320532 exon CG44040 + chr3R 15320686 3` UTR CG44040 + chr3R_21_15320001 chr3R_15320001 RAL-461 1830 chr3R 15445890 15445904 chr3R 15445995 15446009 6 105 2.5 0.5 1.5 2.4 119 chr3R 15445890 exon AdamTS-A - chr3R 15445950 intron AdamTS-A - chr3R 15446009 intron AdamTS-A - chr3R_6_15445001 chr3R_15445001 RAL-461 1831 chr3R 15470966 15471012 chr3R 15471064 15471103 8 94 5.0 3.0 4.0 1.6 137 chr3R 15470966 intron AdamTS-A - chr3R 15471034 intron AdamTS-A - chr3R 15471103 intron AdamTS-A - chr3R_8_15470001 chr3R_15470001 RAL-461 1832 chr3R 15504161 15504176 chr3R 15504266 15504271 7 104 8.0 2.5 5.2 1.1 110 chr3R 15504161 intergenic not near genes chr3R 15504216 intergenic not near genes chr3R 15504271 intergenic not near genes chr3R_7_15500001 chr3R_15500001 RAL-461 1833 chr3R 15504186 15504204 chr3R 15504261 15504309 7 104 5.0 2.0 3.5 1.6 123 chr3R 15504186 intergenic not near genes chr3R 15504248 intergenic not near genes chr3R 15504309 intergenic not near genes chr3R_7_15500001 chr3R_15500001 RAL-461 1834 chr3R 15601159 15601195 chr3R 15608690 15608713 412 7 7535 3.5 5.5 4.5 1.3 7554 chr3R 15601159 intergenic not near genes chr3R 15604936 intergenic not near genes chr3R 15608713 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-461 1835 chr3R 15610550 15610586 chr3R 15610646 15610682 7 96 0.0 0.5 0.2 5.8 132 chr3R 15610550 intergenic not near genes chr3R 15610616 intergenic not near genes chr3R 15610682 intergenic not near genes chr3R_7_15610001 chr3R_15610001 RAL-461 1836 chr3R 15639319 15639367 chr3R 15639625 15639673 6 306 1.5 3.0 2.2 1.9 354 chr3R 15639319 intergenic not near genes chr3R 15639496 intergenic not near genes chr3R 15639673 intergenic not near genes chr3R_6_15635001 chr3R_15635001 RAL-461 1837 chr3R 15691180 15691307 chr3R 15691299 15691414 10 114 0.5 0.5 0.5 6.7 234 chr3R 15691180 intergenic not near genes chr3R 15691297 intergenic not near genes chr3R 15691414 intergenic not near genes chr3R_10_15690001 chr3R_15690001 RAL-461 1838 chr3R 15709615 15709651 chr3R 15709764 15709800 5 144 8.0 3.0 5.5 0.8 185 chr3R 15709615 intergenic not near genes chr3R 15709708 intergenic not near genes chr3R 15709800 intergenic not near genes chr3R_5_15705001 chr3R_15705001 RAL-461 1839 chr3R 15718427 15718450 chr3R 15724757 15724800 12 6344 18.0 14.0 16.0 0.7 6373 chr3R 15718427 intergenic not near genes chr3R 15721614 intergenic not near genes chr3R 15724800 intergenic not near genes chr3R_12_15720001 chr3R_15720001 RAL-461 1840 chr3R 15718268 15718279 chr3R 15724903 15724928 5 6638 20.5 21.0 20.8 0.2 6660 chr3R 15718268 intergenic not near genes chr3R 15721598 intergenic not near genes chr3R 15724928 intergenic not near genes chr3R_5_15720001 chr3R_15720001 RAL-461 1841 chr3R 15735222 15735237 chr3R 15739962 15739977 F-element 4 4740 2.0 3.0 2.5 1.1 4755 chr3R 15735222 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739977 intergenic not near genes chr3R_4_15735001 chr3R_15735001 RAL-461 1842 chr3R 15779645 15779667 chr3R 15779740 15779768 9 97 7.0 7.5 7.2 1.1 123 chr3R 15779645 intergenic CG5614 + chr3R 15779706 intergenic CG5614 + chr3R 15779768 intergenic CG5614 + chr3R_9_15775001 chr3R_15775001 RAL-461 1843 chr3R 15878081 15878099 chr3R 15878189 15878207 8 106 3.0 2.5 2.8 2.1 126 chr3R 15878081 intergenic not near genes chr3R 15878144 intergenic not near genes chr3R 15878207 intergenic not near genes chr3R_8_15875001 chr3R_15875001 RAL-461 1844 chr3R 15891653 15891680 chr3R 15892065 15892081 4 409 3.5 2.5 3.0 1.0 428 chr3R 15891653 intron CG14877 - chr3R 15891867 intron CG14877 - chr3R 15892081 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-461 1845 chr3R 16048852 16048883 chr3R 16048941 16048992 8 94 3.5 2.0 2.8 2.1 140 chr3R 16048852 intron ird5 - chr3R 16048922 intron ird5 - chr3R 16048992 intron ird5 - chr3R_8_16045001 chr3R_16045001 RAL-461 1846 chr3R 16073419 16073437 chr3R 16073543 16073560 7 123 3.0 2.5 2.8 1.8 141 chr3R 16073419 intron Mhcl - chr3R 16073490 intron Mhcl - chr3R 16073560 intron Mhcl - chr3R_7_16070001 chr3R_16070001 RAL-461 1847 chr3R 16189396 16189442 chr3R 16189814 16189850 invader4 20 421 2.5 4.0 3.2 4.8 454 chr3R 16189396 intron sra + chr3R 16189623 intron sra + chr3R 16189850 intron sra + chr3R_20_16185001 chr3R_16185001 RAL-461 1848 chr3R 16260834 16260842 chr3R 16260934 16260942 5 100 0.5 11.5 6.0 0.7 108 chr3R 16260834 intergenic not near genes chr3R 16260888 intergenic bor - chr3R 16260942 intergenic bor - chr3R_5_16260001 chr3R_16260001 RAL-461 1849 chr3R 16298872 16298879 chr3R 16298977 16298984 5 105 12.0 12.0 12.0 0.4 112 chr3R 16298872 intron gish + chr3R 16298928 intron gish + chr3R 16298984 intron gish + chr3R_5_16295001 chr3R_16295001 RAL-461 1850 chr3R 16298885 16298907 chr3R 16298965 16299012 7 100 4.0 9.0 6.5 0.9 127 chr3R 16298885 intron gish + chr3R 16298948 intron gish + chr3R 16299012 intron gish + chr3R_7_16295001 chr3R_16295001 RAL-461 1851 chr3R 16374282 16374323 chr3R 16374419 16374460 9 128 4.0 3.0 3.5 2.0 178 chr3R 16374282 intergenic ss - chr3R 16374371 intergenic ss - chr3R 16374460 3` UTR ss - chr3R_9_16370001 chr3R_16370001 RAL-461 1852 chr3R 16704521 16704560 chr3R 16704612 16704649 8 90 2.5 2.0 2.2 2.5 128 chr3R 16704521 intron Ubx - chr3R 16704585 intron Ubx - chr3R 16704649 intron Ubx - chr3R_8_16700001 chr3R_16700001 RAL-461 1853 chr3R 16734856 16734891 chr3R 16734959 16734994 5 101 0.0 1.0 0.5 3.3 138 chr3R 16734856 intergenic Ubx - chr3R 16734925 intergenic Ubx - chr3R 16734994 intergenic not near genes chr3R_5_16730001 chr3R_16730001 RAL-461 1854 chr3R 16797425 16797467 chr3R 16797555 16797597 11 129 1.0 4.5 2.8 2.9 172 chr3R 16797425 intergenic not near genes chr3R 16797511 intergenic not near genes chr3R 16797597 intergenic not near genes chr3R_11_16795001 chr3R_16795001 RAL-461 1855 chr3R 16921815 16921852 chr3R 16921914 16921949 12 102 2.0 1.5 1.8 4.3 134 chr3R 16921815 intron iab-8 - chr3R 16921882 intron iab-8 - chr3R 16921949 intron iab-8 - chr3R_12_16920001 chr3R_16920001 RAL-461 1856 chr3R 16921853 16921861 chr3R 16921912 16921965 4 82 0.5 1.5 1.0 2.0 112 chr3R 16921853 intron iab-8 - chr3R 16921909 intron iab-8 - chr3R 16921965 intron iab-8 - chr3R_4_16920001 chr3R_16920001 RAL-461 1857 chr3R 17179034 17179073 chr3R 17179137 17179146 7 91 2.0 7.5 4.8 1.2 112 chr3R 17179034 intron Mur89F - chr3R 17179090 intron Mur89F - chr3R 17179146 intron Mur89F - chr3R_7_17175001 chr3R_17175001 RAL-461 1858 chr3R 17209683 17209703 chr3R 17209791 17209805 5 106 4.0 7.0 5.5 0.8 122 chr3R 17209683 intergenic not near genes chr3R 17209744 intergenic not near genes chr3R 17209805 intergenic not near genes chr3R_5_17205001 chr3R_17205001 RAL-461 1859 chr3R 17294658 17294696 chr3R 17295106 17295142 BS 9 443 1.5 2.5 2.0 3.0 484 chr3R 17294658 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295142 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-461 1860 chr3R 17346680 17346721 chr3R 17348263 17348304 F-element 10 1581 4.0 2.5 3.2 2.4 1624 chr3R 17346680 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348304 intron beat-IIa - chr3R_10_17345001 chr3R_17345001 RAL-461 1861 chr3R 17348710 17348738 chr3R 17348813 17348840 8 98 2.5 1.5 2.0 2.7 130 chr3R 17348710 intron beat-IIa - chr3R 17348775 intron beat-IIa - chr3R 17348840 intron beat-IIa - chr3R_8_17345001 chr3R_17345001 RAL-461 1862 chr3R 17348740 17348753 chr3R 17348812 17348835 5 88 2.0 1.5 1.8 1.8 95 chr3R 17348740 intron beat-IIa - chr3R 17348788 intron beat-IIa - chr3R 17348835 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-461 1863 chr3R 17384005 17384047 chr3R 17384496 17384538 5 490 1.0 4.5 2.8 1.3 533 chr3R 17384005 intron,intron Brf -,lute + chr3R 17384272 intron,intron Brf -,lute + chr3R 17384538 intron,intron Brf -,lute + chr3R_5_17380001 chr3R_17380001 RAL-461 1864 chr3R 17406772 17406793 chr3R 17406928 17406949 4 156 3.0 2.5 2.8 1.1 177 chr3R 17406772 intron CG42798 + chr3R 17406860 intron CG42798 + chr3R 17406949 intron CG42798 + chr3R_4_17405001 chr3R_17405001 RAL-461 1865 chr3R 17461182 17461231 chr3R 17461284 17461328 12 100 0.5 3.5 2.0 4.0 146 chr3R 17461182 intergenic not near genes chr3R 17461255 intergenic not near genes chr3R 17461328 intergenic not near genes chr3R_12_17460001 chr3R_17460001 RAL-461 1866 chr3R 17522291 17522300 chr3R 17522400 17522420 5 118 0.0 0.0 0.0 5.0 129 chr3R 17522291 intergenic not near genes chr3R 17522356 intergenic not near genes chr3R 17522420 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-461 1867 chr3R 17593030 17593052 chr3R 17593187 17593209 5 157 2.0 4.5 3.2 1.2 179 chr3R 17593030 intergenic not near genes chr3R 17593120 intergenic not near genes chr3R 17593209 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-461 1868 chr3R 17638299 17638345 chr3R 17638804 17638851 roo 19 501 6.0 6.0 6.0 2.7 552 chr3R 17638299 intron CG43175 + chr3R 17638575 intron CG43175 + chr3R 17638851 intron,intron CG43175 +,CR45222 + chr3R_19_17635001 chr3R_17635001 RAL-461 1869 chr3R 17645690 17645708 chr3R 17645840 17645858 6 149 4.0 2.5 3.2 1.4 168 chr3R 17645690 intergenic CG43175 + chr3R 17645774 intergenic not near genes chr3R 17645858 intergenic not near genes chr3R_6_17645001 chr3R_17645001 RAL-461 1870 chr3R 17653063 17653100 chr3R 17653173 17653175 5 100 10.0 4.0 7.0 0.6 112 chr3R 17653063 intron,intron CG14322 +,CR45223 - chr3R 17653119 intron,intron CG14322 +,CR45223 - chr3R 17653175 intron,intron CG14322 +,CR45223 - chr3R_5_17650001 chr3R_17650001 RAL-461 1871 chr3R 17734828 17734860 chr3R 17734961 17734993 8 128 4.0 4.5 4.2 1.5 165 chr3R 17734828 intergenic CG14321 + chr3R 17734910 intergenic not near genes chr3R 17734993 intergenic not near genes chr3R_8_17730001 chr3R_17730001 RAL-461 1872 chr3R 17811176 17811192 chr3R 17811276 17811289 7 100 5.5 0.0 2.8 1.8 113 chr3R 17811176 intergenic CG18012 -,tinc + chr3R 17811232 intergenic CG18012 -,tinc + chr3R 17811289 intergenic CG18012 -,tinc + chr3R_7_17810001 chr3R_17810001 RAL-461 1873 chr3R 17823191 17823232 chr3R 17823296 17823312 10 99 2.5 4.0 3.2 2.4 121 chr3R 17823191 intron tinc + chr3R 17823252 intron tinc + chr3R 17823312 intron tinc + chr3R_10_17820001 chr3R_17820001 RAL-461 1874 chr3R 17899072 17899093 chr3R 17899170 17899170 4 93 8.0 5.0 6.5 0.5 98 chr3R 17899072 intron Rim - chr3R 17899121 intron Rim - chr3R 17899170 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-461 1875 chr3R 17980327 17980372 chr3R 17980454 17980482 5 111 2.0 3.0 2.5 1.4 155 chr3R 17980327 intron cpo + chr3R 17980404 intron cpo + chr3R 17980482 intron cpo + chr3R_5_17980001 chr3R_17980001 RAL-461 1876 chr3R 18025318 18025364 chr3R 18025419 18025465 11 99 2.5 2.5 2.5 3.1 147 chr3R 18025318 3` UTR CG7794 + chr3R 18025392 intergenic CG7794 + chr3R 18025465 intergenic CG7794 + chr3R_11_18025001 chr3R_18025001 RAL-461 1877 chr3R 18041743 18041774 chr3R 18041830 18041856 8 94 2.5 1.0 1.8 2.9 113 chr3R 18041743 intergenic not near genes chr3R 18041800 intergenic not near genes chr3R 18041856 intergenic not near genes chr3R_8_18040001 chr3R_18040001 RAL-461 1878 chr3R 18061430 18061451 chr3R 18061537 18061562 5 109 0.5 0.0 0.2 4.2 132 chr3R 18061430 intergenic not near genes chr3R 18061496 intergenic not near genes chr3R 18061562 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-461 1879 chr3R 18122880 18122911 chr3R 18122976 18123008 5 97 3.0 2.0 2.5 1.4 128 chr3R 18122880 intron sr + chr3R 18122944 intron sr + chr3R 18123008 intron sr + chr3R_5_18120001 chr3R_18120001 RAL-461 1880 chr3R 18134855 18134863 chr3R 18134972 18134980 5 117 12.0 7.0 9.5 0.5 125 chr3R 18134855 intergenic not near genes chr3R 18134918 intergenic not near genes chr3R 18134980 intergenic not near genes chr3R_5_18130001 chr3R_18130001 RAL-461 1881 chr3R 18134864 18134892 chr3R 18134971 18134987 9 110 7.5 7.0 7.2 1.1 123 chr3R 18134864 intergenic not near genes chr3R 18134926 intergenic not near genes chr3R 18134987 intergenic not near genes chr3R_9_18130001 chr3R_18130001 RAL-461 1882 chr3R 18143547 18143565 chr3R 18143649 18143674 4 107 7.0 2.5 4.8 0.7 127 chr3R 18143547 intergenic not near genes chr3R 18143610 intergenic not near genes chr3R 18143674 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-461 1883 chr3R 18352559 18352607 chr3R 18352672 18352720 11 113 3.0 1.5 2.2 3.4 161 chr3R 18352559 intron CG15803 - chr3R 18352640 intron CG15803 - chr3R 18352720 intron CG15803 - chr3R_11_18350001 chr3R_18350001 RAL-461 1884 chr3R 18501581 18501603 chr3R 18501682 18501704 10 100 8.0 7.5 7.8 1.1 123 chr3R 18501581 intron fru - chr3R 18501642 intron fru - chr3R 18501704 intron fru - chr3R_10_18500001 chr3R_18500001 RAL-461 1885 chr3R 18501612 18501625 chr3R 18501668 18501726 5 87 5.0 6.5 5.8 0.7 114 chr3R 18501612 intron fru - chr3R 18501669 intron fru - chr3R 18501726 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-461 1886 chr3R 18606490 18606507 chr3R 18610741 18610749 F-element 4 4249 7.0 6.5 6.8 0.5 4259 chr3R 18606490 intron,intron qin +,CG14304 - chr3R 18608620 intron,intron qin +,CG14304 - chr3R 18610749 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-461 1887 chr3R 18606508 18606524 chr3R 18610735 18610776 F-element 6 4245 4.5 4.0 4.2 1.2 4268 chr3R 18606508 intron,intron qin +,CG14304 - chr3R 18608642 intron,intron qin +,CG14304 - chr3R 18610776 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-461 1888 chr3R 18618248 18618292 chr3R 18618353 18618397 8 102 3.0 2.0 2.5 2.3 149 chr3R 18618248 intron,intron qin +,CG14304 - chr3R 18618322 intron,intron qin +,CG14304 - chr3R 18618397 intron,intron qin +,CG14304 - chr3R_8_18615001 chr3R_18615001 RAL-461 1889 chr3R 18695746 18695764 chr3R 18695850 18695858 4 102 8.5 0.0 4.2 0.8 112 chr3R 18695746 3` UTR CG34282 + chr3R 18695802 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-461 1890 chr3R 18785851 18785890 chr3R 18785948 18785987 13 94 7.5 7.0 7.2 1.6 136 chr3R 18785851 intron CG7720 - chr3R 18785919 intron CG7720 - chr3R 18785987 intron CG7720 - chr3R_13_18785001 chr3R_18785001 RAL-461 1891 chr3R 18785891 18785901 chr3R 18785941 18785956 4 74 7.0 7.5 7.2 0.5 65 chr3R 18785891 intron CG7720 - chr3R 18785924 intron CG7720 - chr3R 18785956 intron CG7720 - chr3R_4_18785001 chr3R_18785001 RAL-461 1892 chr3R 18788918 18788935 chr3R 18788982 18789027 5 82 3.5 2.0 2.8 1.3 109 chr3R 18788918 intron CG7720 - chr3R 18788972 intron CG7720 - chr3R 18789027 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-461 1893 chr3R 18807309 18807334 chr3R 18807406 18807431 5 96 3.0 0.0 1.5 2.0 122 chr3R 18807309 intron CG18208 - chr3R 18807370 intron CG18208 - chr3R 18807431 intron CG18208 - chr3R_5_18805001 chr3R_18805001 RAL-461 1894 chr3R 18812079 18812106 chr3R 18812156 18812204 8 92 2.0 3.0 2.5 2.3 125 chr3R 18812079 intron CG18208 - chr3R 18812142 intron CG18208 - chr3R 18812204 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-461 1895 chr3R 18839791 18839836 chr3R 18839895 18839940 6 94 2.5 0.5 1.5 2.4 149 chr3R 18839791 intron CG18208 - chr3R 18839866 intron CG18208 - chr3R 18839940 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-461 1896 chr3R 18892644 18892678 chr3R 18892776 18892799 5 129 1.5 3.5 2.5 1.4 155 chr3R 18892644 intergenic not near genes chr3R 18892722 intergenic not near genes chr3R 18892799 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-461 1897 chr3R 19101580 19101623 chr3R 19101678 19101685 4 86 0.0 2.0 1.0 2.0 105 chr3R 19101580 intron CG6040 + chr3R 19101632 intron CG6040 + chr3R 19101685 intron CG6040 + chr3R_4_19100001 chr3R_19100001 RAL-461 1898 chr3R 19139757 19139808 chr3R 19139872 19139878 16 111 4.0 2.0 3.0 4.0 121 chr3R 19139757 3` UTR Ppcs - chr3R 19139818 3` UTR Ppcs - chr3R 19139878 3` UTR Ppcs - chr3R_16_19135001 chr3R_19135001 RAL-461 1899 chr3R 19165900 19165953 chr3R 19166030 19166038 15 123 6.0 3.5 4.8 2.6 138 chr3R 19165900 intron sqz + chr3R 19165969 intron sqz + chr3R 19166038 intron sqz + chr3R_15_19165001 chr3R_19165001 RAL-461 1900 chr3R 19187660 19187706 chr3R 19187752 19187803 17 95 1.0 6.5 3.8 3.5 143 chr3R 19187660 intron CG31475 + chr3R 19187732 intron CG31475 + chr3R 19187803 intron CG31475 + chr3R_17_19185001 chr3R_19185001 RAL-461 1901 chr3R 19248852 19248889 chr3R 19248952 19248984 7 99 2.5 0.0 1.2 3.2 132 chr3R 19248852 intergenic not near genes chr3R 19248918 intergenic not near genes chr3R 19248984 intergenic not near genes chr3R_7_19245001 chr3R_19245001 RAL-461 1902 chr3R 19340375 19340430 chr3R 19340472 19340517 14 95 4.0 4.5 4.2 2.7 142 chr3R 19340375 intergenic not near genes chr3R 19340446 intergenic not near genes chr3R 19340517 intergenic not near genes chr3R_14_19340001 chr3R_19340001 RAL-461 1903 chr3R 19344648 19344699 chr3R 19344803 19344855 12 153 3.5 5.0 4.2 2.3 207 chr3R 19344648 intergenic not near genes chr3R 19344752 intergenic not near genes chr3R 19344855 intergenic not near genes chr3R_12_19340001 chr3R_19340001 RAL-461 1904 chr3R 19367556 19367597 chr3R 19367681 19367721 11 124 6.5 0.5 3.5 2.4 165 chr3R 19367556 intergenic not near genes chr3R 19367638 intergenic not near genes chr3R 19367721 intergenic not near genes chr3R_11_19365001 chr3R_19365001 RAL-461 1905 chr3R 19505917 19505968 chr3R 19506036 19506087 12 118 3.0 5.0 4.0 2.4 170 chr3R 19505917 exon Dys + chr3R 19506002 intron Dys + chr3R 19506087 intron Dys + chr3R_12_19505001 chr3R_19505001 RAL-461 1906 chr3R 19570298 19570339 chr3R 19570384 19570435 11 93 2.0 3.0 2.5 3.1 137 chr3R 19570298 intron Dys + chr3R 19570366 intron Dys + chr3R 19570435 intron Dys + chr3R_11_19570001 chr3R_19570001 RAL-461 1907 chr3R 19592322 19592322 chr3R 19597485 19597518 4 5170 8.0 27.5 17.8 0.2 5196 chr3R 19592322 intron Dys + chr3R 19594920 3` UTR Dys + chr3R 19597518 3` UTR Cpr92A - chr3R_4_19590001 chr3R_19590001 RAL-461 1908 chr3R 19602742 19602789 chr3R 19602835 19602868 8 94 5.0 4.5 4.8 1.4 126 chr3R 19602742 intergenic CG7333 + chr3R 19602805 intergenic CG7333 + chr3R 19602868 intergenic CG7333 + chr3R_8_19600001 chr3R_19600001 RAL-461 1909 chr3R 19655720 19655768 chr3R 19655830 19655878 9 105 1.5 0.0 0.8 5.0 158 chr3R 19655720 intron CG6184 - chr3R 19655799 intron CG6184 - chr3R 19655878 intron CG6184 - chr3R_9_19655001 chr3R_19655001 RAL-461 1910 chr3R 19702301 19702353 chr3R 19702403 19702430 17 92 2.0 2.5 2.2 5.3 129 chr3R 19702301 intergenic not near genes chr3R 19702366 intergenic not near genes chr3R 19702430 intergenic not near genes chr3R_17_19700001 chr3R_19700001 RAL-461 1911 chr3R 19716194 19716226 chr3R 19716291 19716323 7 97 3.0 0.0 1.5 2.8 129 chr3R 19716194 intergenic CG34286 - chr3R 19716258 intergenic CG34286 - chr3R 19716323 intergenic CG34286 - chr3R_7_19715001 chr3R_19715001 RAL-461 1912 chr3R 19908274 19908301 chr3R 19908378 19908405 9 102 0.5 2.0 1.2 4.1 131 chr3R 19908274 intron RhoGAP92B + chr3R 19908340 intron RhoGAP92B + chr3R 19908405 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_9_19905001 chr3R_19905001 RAL-461 1913 chr3R 19913991 19913997 chr3R 19914104 19914110 4 113 13.5 8.5 11.0 0.3 119 chr3R 19913991 3` UTR RhoGAP92B + chr3R 19914050 3` UTR RhoGAP92B + chr3R 19914110 3` UTR RhoGAP92B + chr3R_4_19910001 chr3R_19910001 RAL-461 1914 chr3R 19913998 19914045 chr3R 19914102 19914158 23 105 4.5 8.0 6.2 3.2 160 chr3R 19913998 3` UTR RhoGAP92B + chr3R 19914078 3` UTR RhoGAP92B + chr3R 19914158 3` UTR RhoGAP92B + chr3R_23_19910001 chr3R_19910001 RAL-461 1915 chr3R 19957267 19957283 chr3R 19957352 19957366 5 90 3.5 2.5 3.0 1.2 99 chr3R 19957267 intron Hs6st - chr3R 19957316 intron Hs6st - chr3R 19957366 intron Hs6st - chr3R_5_19955001 chr3R_19955001 RAL-461 1916 chr3R 20008804 20008851 chr3R 20008901 20008930 8 96 5.5 5.0 5.2 1.3 126 chr3R 20008804 intergenic MED25 +,Hs6st - chr3R 20008867 intergenic MED25 +,Hs6st - chr3R 20008930 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 RAL-461 1917 chr3R 20059476 20059490 chr3R 20059546 20059590 5 90 4.5 1.0 2.8 1.3 114 chr3R 20059476 intron CG4390 - chr3R 20059533 intron CG4390 - chr3R 20059590 exon CG4390 - chr3R_5_20055001 chr3R_20055001 RAL-461 1918 chr3R 20109517 20109562 chr3R 20114741 20114787 copia 5 5225 3.5 3.5 3.5 1.1 5270 chr3R 20109517 intergenic not near genes chr3R 20112152 intergenic not near genes chr3R 20114787 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-461 1919 chr3R 20156679 20156716 chr3R 20165869 20165906 roo 6 9190 4.0 3.5 3.8 1.2 9227 chr3R 20156679 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165906 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-461 1920 chr3R 20193468 20193474 chr3R 20193577 20193583 4 109 1.5 6.5 4.0 0.8 115 chr3R 20193468 intergenic not near genes chr3R 20193526 intergenic not near genes chr3R 20193583 intergenic not near genes chr3R_4_20190001 chr3R_20190001 RAL-461 1921 chr3R 20205389 20205592 chr3R 20205525 20205694 13 130 0.5 0.5 0.5 8.7 305 chr3R 20205389 intron Nlg4 + chr3R 20205542 intron Nlg4 + chr3R 20205694 intron Nlg4 + chr3R_13_20205001 chr3R_20205001 RAL-461 1922 chr3R 20222245 20222286 chr3R 20222342 20222389 10 100 1.5 3.0 2.2 3.1 144 chr3R 20222245 intron Nlg4 + chr3R 20222317 intron Nlg4 + chr3R 20222389 intron Nlg4 + chr3R_10_20220001 chr3R_20220001 RAL-461 1923 chr3R 20230303 20230347 chr3R 20230403 20230450 9 102 3.0 0.5 1.8 3.2 147 chr3R 20230303 intron Nlg4 + chr3R 20230376 intron Nlg4 + chr3R 20230450 intron Nlg4 + chr3R_9_20230001 chr3R_20230001 RAL-461 1924 chr3R 20245269 20245304 chr3R 20248886 20248923 F-element 11 3624 3.0 4.0 3.5 2.4 3654 chr3R 20245269 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248923 intergenic not near genes chr3R_11_20245001 chr3R_20245001 RAL-461 1925 chr3R 20251729 20251746 chr3R 20251961 20251978 5 231 6.5 3.5 5.0 0.8 249 chr3R 20251729 intergenic not near genes chr3R 20251854 intergenic not near genes chr3R 20251978 intergenic not near genes chr3R_5_20250001 chr3R_20250001 RAL-461 1926 chr3R 20252225 20252247 chr3R 20252322 20252345 7 98 0.0 7.0 3.5 1.6 120 chr3R 20252225 intergenic not near genes chr3R 20252285 intergenic cic + chr3R 20252345 intergenic cic + chr3R_7_20250001 chr3R_20250001 RAL-461 1927 chr3R 20266494 20266542 chr3R 20272985 20273033 Burdock 14 6490 0.5 4.0 2.2 4.4 6539 chr3R 20266494 intron cic + chr3R 20269764 intron cic + chr3R 20273033 intron cic + chr3R_14_20265001 chr3R_20265001 RAL-461 1928 chr3R 20282255 20282309 chr3R 20282351 20282390 9 94 1.5 5.5 3.5 2.0 135 chr3R 20282255 intron cic + chr3R 20282322 intron cic + chr3R 20282390 intron cic + chr3R_9_20280001 chr3R_20280001 RAL-461 1929 chr3R 20330986 20331029 chr3R 20331492 20331535 roo 16 506 2.5 7.5 5.0 2.7 549 chr3R 20330986 intergenic Sirt2 + chr3R 20331260 intergenic Sirt2 + chr3R 20331535 intergenic not near genes chr3R_16_20330001 chr3R_20330001 RAL-461 1930 chr3R 20434824 20434862 chr3R 20435029 20435067 5 205 4.5 1.5 3.0 1.2 243 chr3R 20434824 intron Gfrl - chr3R 20434946 intron Gfrl - chr3R 20435067 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-461 1931 chr3R 20512995 20513035 chr3R 20515705 20515758 opus 8 2717 4.0 3.5 3.8 1.7 2763 chr3R 20512995 intergenic not near genes chr3R 20514376 intergenic not near genes chr3R 20515758 intergenic not near genes chr3R_8_20510001 chr3R_20510001 RAL-461 1932 chr3R 20594461 20594511 chr3R 20594571 20594621 13 106 3.5 0.5 2.0 4.3 160 chr3R 20594461 intron bon + chr3R 20594541 intron bon + chr3R 20594621 intron bon + chr3R_13_20590001 chr3R_20590001 RAL-461 1933 chr3R 20596171 20596212 chr3R 20596278 20596319 15 107 3.0 5.5 4.2 2.9 148 chr3R 20596171 intron bon + chr3R 20596245 intron bon + chr3R 20596319 intron bon + chr3R_15_20595001 chr3R_20595001 RAL-461 1934 chr3R 20680476 20680515 chr3R 20680573 20680614 6 102 6.5 0.0 3.2 1.4 138 chr3R 20680476 intergenic not near genes chr3R 20680545 intergenic not near genes chr3R 20680614 intergenic not near genes chr3R_6_20680001 chr3R_20680001 RAL-461 1935 chr3R 20771706 20771723 chr3R 20771782 20771824 6 90 0.5 3.5 2.0 2.0 118 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771765 intron,intron Syp +,Takl1 - chr3R 20771824 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-461 1936 chr3R 20848344 20848355 chr3R 20848454 20848465 4 110 2.0 11.5 6.8 0.5 121 chr3R 20848344 intergenic not near genes chr3R 20848404 intergenic not near genes chr3R 20848465 intergenic not near genes chr3R_4_20845001 chr3R_20845001 RAL-461 1937 chr3R 20850078 20850108 chr3R 20850172 20850212 6 103 0.5 1.0 0.8 3.3 134 chr3R 20850078 intergenic RpS30 + chr3R 20850145 intergenic RpS30 + chr3R 20850212 intergenic RpS30 + chr3R_6_20850001 chr3R_20850001 RAL-461 1938 chr3R 20870235 20870280 chr3R 20870334 20870376 10 96 4.0 2.0 3.0 2.5 141 chr3R 20870235 intergenic not near genes chr3R 20870306 intergenic not near genes chr3R 20870376 intergenic not near genes chr3R_10_20870001 chr3R_20870001 RAL-461 1939 chr3R 20936069 20936107 chr3R 20936166 20936204 5 97 2.0 2.0 2.0 1.7 135 chr3R 20936069 intron CG31191 - chr3R 20936136 intron CG31191 - chr3R 20936204 intron CG31191 - chr3R_5_20935001 chr3R_20935001 RAL-461 1940 chr3R 20997405 20997449 chr3R 20997532 20997576 7 124 6.0 1.5 3.8 1.5 171 chr3R 20997405 intron Calx + chr3R 20997490 intron Calx + chr3R 20997576 intron Calx + chr3R_7_20995001 chr3R_20995001 RAL-461 1941 chr3R 21015257 21015296 chr3R 21015358 21015403 8 101 4.0 4.5 4.2 1.5 146 chr3R 21015257 3` UTR Calx + chr3R 21015330 3` UTR Calx + chr3R 21015403 3` UTR Calx + chr3R_8_21015001 chr3R_21015001 RAL-461 1942 chr3R 21108041 21108063 chr3R 21108312 21108339 6 278 5.5 1.5 3.5 1.3 298 chr3R 21108041 intergenic Sec15 -,rtet + chr3R 21108190 intergenic Sec15 -,rtet + chr3R 21108339 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-461 1943 chr3R 21154540 21154587 chr3R 21154758 21154817 10 229 2.5 0.0 1.2 4.5 277 chr3R 21154540 intron SNF4Agamma + chr3R 21154678 intron SNF4Agamma + chr3R 21154817 intron SNF4Agamma + chr3R_10_21150001 chr3R_21150001 RAL-461 1944 chr3R 21159094 21159133 chr3R 21159216 21159256 13 119 4.5 1.5 3.0 3.2 162 chr3R 21159094 intron SNF4Agamma + chr3R 21159175 intron SNF4Agamma + chr3R 21159256 intron,3` UTR SNF4Agamma +,CG10824 - chr3R_13_21155001 chr3R_21155001 RAL-461 1945 chr3R 21163245 21163256 chr3R 21163343 21163354 4 98 4.0 4.5 4.2 0.8 109 chr3R 21163245 intron SNF4Agamma + chr3R 21163300 intron SNF4Agamma + chr3R 21163354 intron SNF4Agamma + chr3R_4_21160001 chr3R_21160001 RAL-461 1946 chr3R 21183243 21183260 chr3R 21183336 21183357 5 94 2.0 5.5 3.8 1.0 114 chr3R 21183243 intron SNF4Agamma + chr3R 21183300 intron SNF4Agamma + chr3R 21183357 intron SNF4Agamma + chr3R_5_21180001 chr3R_21180001 RAL-461 1947 chr3R 21240457 21240477 chr3R 21240542 21240553 5 98 1.5 5.0 3.2 1.2 96 chr3R 21240457 intergenic not near genes chr3R 21240505 intergenic not near genes chr3R 21240553 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-461 1948 chr3R 21330863 21330878 chr3R 21330962 21330964 5 101 6.5 2.5 4.5 0.9 101 chr3R 21330863 intron CG16791 - chr3R 21330914 intron CG16791 - chr3R 21330964 intron CG16791 - chr3R_5_21330001 chr3R_21330001 RAL-461 1949 chr3R 21330880 21330899 chr3R 21330961 21330969 8 91 6.0 2.5 4.2 1.5 89 chr3R 21330880 intron CG16791 - chr3R 21330924 intron CG16791 - chr3R 21330969 intron CG16791 - chr3R_8_21330001 chr3R_21330001 RAL-461 1950 chr3R 21343804 21343839 chr3R 21343917 21343927 18 110 2.0 3.5 2.8 4.7 123 chr3R 21343804 intron CG16791 - chr3R 21343866 intron CG16791 - chr3R 21343927 intron CG16791 - chr3R_18_21340001 chr3R_21340001 RAL-461 1951 chr3R 21385684 21385726 chr3R 21385773 21385787 4 83 2.5 0.0 1.2 1.8 103 chr3R 21385684 intergenic not near genes chr3R 21385736 intergenic not near genes chr3R 21385787 intergenic not near genes chr3R_4_21385001 chr3R_21385001 RAL-461 1952 chr3R 21464384 21464423 chr3R 21464489 21464527 8 104 3.0 0.5 1.8 2.9 143 chr3R 21464384 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464527 intergenic not near genes chr3R_8_21460001 chr3R_21460001 RAL-461 1953 chr3R 21502942 21502980 chr3R 21503108 21503146 18 163 3.5 1.0 2.2 5.6 204 chr3R 21502942 intron C15 + chr3R 21503044 intron C15 + chr3R 21503146 intron C15 + chr3R_18_21500001 chr3R_21500001 RAL-461 1954 chr3R 21517998 21518270 chr3R 21518147 21518374 8 133 0.0 0.0 0.0 8.0 376 chr3R 21517998 intergenic not near genes chr3R 21518186 intergenic not near genes chr3R 21518374 intergenic not near genes chr3R_8_21515001 chr3R_21515001 RAL-461 1955 chr3R 21519991 21519998 chr3R 21520097 21520119 5 118 5.0 1.0 3.0 1.2 128 chr3R 21519991 intergenic not near genes chr3R 21520055 intergenic not near genes chr3R 21520119 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-461 1956 chr3R 21520000 21520131 chr3R 21520091 21520245 19 112 1.0 1.0 1.0 9.5 245 chr3R 21520000 intergenic not near genes chr3R 21520122 intergenic not near genes chr3R 21520245 intergenic not near genes chr3R_19_21520001 chr3R_21520001 RAL-461 1957 chr3R 21536794 21536837 chr3R 21536900 21536941 7 104 1.5 2.5 2.0 2.3 147 chr3R 21536794 intergenic not near genes chr3R 21536868 intergenic not near genes chr3R 21536941 intergenic not near genes chr3R_7_21535001 chr3R_21535001 RAL-461 1958 chr3R 21651219 21651270 chr3R 21651317 21651333 17 95 4.5 1.5 3.0 4.2 114 chr3R 21651219 intron E2f - chr3R 21651276 intron E2f - chr3R 21651333 intron E2f - chr3R_17_21650001 chr3R_21650001 RAL-461 1959 chr3R 21664160 21664188 chr3R 21664281 21664323 5 129 7.5 0.0 3.8 1.0 163 chr3R 21664160 intergenic CG15497 + chr3R 21664242 intergenic CG15497 + chr3R 21664323 intergenic CG15497 + chr3R_5_21660001 chr3R_21660001 RAL-461 1960 chr3R 21672714 21672728 chr3R 21672818 21672833 7 104 8.5 6.0 7.2 0.9 119 chr3R 21672714 3` UTR CG31176 - chr3R 21672774 3` UTR CG31176 - chr3R 21672833 3` UTR CG31176 - chr3R_7_21670001 chr3R_21670001 RAL-461 1961 chr3R 21725671 21725691 chr3R 21725820 21725834 7 150 0.0 7.5 3.8 1.5 163 chr3R 21725671 intergenic not near genes chr3R 21725752 intergenic not near genes chr3R 21725834 intergenic not near genes chr3R_7_21725001 chr3R_21725001 RAL-461 1962 chr3R 21738203 21738250 chr3R 21738339 21738386 13 135 0.5 4.5 2.5 3.7 183 chr3R 21738203 intergenic CG34034 - chr3R 21738294 intergenic CG34034 - chr3R 21738386 3` UTR CG34034 - chr3R_13_21735001 chr3R_21735001 RAL-461 1963 chr3R 21754385 21754424 chr3R 21754535 21754574 9 147 1.5 4.5 3.0 2.2 189 chr3R 21754385 5` UTR CG31198 + chr3R 21754480 intron CG31198 + chr3R 21754574 exon CG31198 + chr3R_9_21750001 chr3R_21750001 RAL-461 1964 chr3R 21761102 21761136 chr3R 21768514 21768547 mdg1 5 7409 2.5 2.0 2.2 1.6 7445 chr3R 21761102 exon CG42335 + chr3R 21764824 intron CG42335 + chr3R 21768547 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-461 1965 chr3R 21861228 21861245 chr3R 21861309 21861343 6 92 4.5 0.0 2.2 1.9 115 chr3R 21861228 intergenic CR45645 -,CR45644 - chr3R 21861286 intergenic CR45645 -,CR45644 - chr3R 21861343 intergenic CR45645 -,CR45644 - chr3R_6_21860001 chr3R_21860001 RAL-461 1966 chr3R 21907534 21907534 chr3R 28831801 28831802 9 6924267 22.0 6.5 14.2 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_9_25365001 chr3R_25365001 RAL-461 1967 chr3R 21907535 21907535 chr3R 28831801 28831802 22 6924266 21.5 6.5 14.0 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-461 1968 chr3R 21907536 21907536 chr3R 28831801 28831804 23 6924266 22.0 6.5 14.2 1.5 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-461 1969 chr3R 21924014 21924048 chr3R 21924119 21924152 10 103 1.5 1.0 1.2 4.5 138 chr3R 21924014 intergenic not near genes chr3R 21924083 intergenic not near genes chr3R 21924152 intergenic not near genes chr3R_10_21920001 chr3R_21920001 RAL-461 1970 chr3R 21937209 21937233 chr3R 21937306 21937325 6 96 1.5 3.5 2.5 1.7 116 chr3R 21937209 intergenic not near genes chr3R 21937267 intergenic not near genes chr3R 21937325 intergenic not near genes chr3R_6_21935001 chr3R_21935001 RAL-461 1971 chr3R 21982408 21982442 chr3R 21982511 21982545 8 103 2.0 3.5 2.8 2.1 137 chr3R 21982408 intron Eip93F + chr3R 21982476 intron Eip93F + chr3R 21982545 intron Eip93F + chr3R_8_21980001 chr3R_21980001 RAL-461 1972 chr3R 21985209 21985253 chr3R 21985334 21985378 14 125 2.0 4.0 3.0 3.5 169 chr3R 21985209 intron Eip93F + chr3R 21985294 intron Eip93F + chr3R 21985378 intron Eip93F + chr3R_14_21985001 chr3R_21985001 RAL-461 1973 chr3R 22013047 22013064 chr3R 22013149 22013166 4 102 5.0 2.5 3.8 0.8 119 chr3R 22013047 intergenic not near genes chr3R 22013106 intergenic not near genes chr3R 22013166 intergenic not near genes chr3R_4_22010001 chr3R_22010001 RAL-461 1974 chr3R 22055559 22055582 chr3R 22055757 22055770 10 205 2.0 3.5 2.8 2.6 211 chr3R 22055559 intron how + chr3R 22055664 intron how + chr3R 22055770 intron how + chr3R_10_22055001 chr3R_22055001 RAL-461 1975 chr3R 22234681 22234715 chr3R 22236003 22236036 pogo 11 1331 2.5 5.0 3.8 2.3 1355 chr3R 22234681 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236036 intron SKIP + chr3R_11_22235001 chr3R_22235001 RAL-461 1976 chr3R 22239471 22239522 chr3R 22248551 22248590 roo 9 9071 5.0 0.5 2.8 2.4 9119 chr3R 22239471 intron SKIP + chr3R 22244030 intron SKIP + chr3R 22248590 intron SKIP + chr3R_9_22240001 chr3R_22240001 RAL-461 1977 chr3R 22428584 22428604 chr3R 22428664 22428685 6 80 5.0 1.5 3.2 1.4 101 chr3R 22428584 intron CG13847 - chr3R 22428634 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_6_22425001 chr3R_22425001 RAL-461 1978 chr3R 22433078 22433093 chr3R 22433198 22433213 4 119 6.5 3.5 5.0 0.7 135 chr3R 22433078 intron CG13847 - chr3R 22433146 intron CG13847 - chr3R 22433213 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-461 1979 chr3R 22450546 22450573 chr3R 22453186 22453229 NOF 9 2647 3.0 4.0 3.5 2.0 2683 chr3R 22450546 intron CG34376 + chr3R 22451888 intron CG34376 + chr3R 22453229 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-461 1980 chr3R 22507788 22507816 chr3R 22507878 22507915 6 98 3.5 4.5 4.0 1.2 127 chr3R 22507788 intron Octbeta1R + chr3R 22507852 intron Octbeta1R + chr3R 22507915 intron Octbeta1R + chr3R_6_22505001 chr3R_22505001 RAL-461 1981 chr3R 22559306 22559351 chr3R 22559413 22559458 9 106 4.0 6.5 5.2 1.5 152 chr3R 22559306 intron CG5278 - chr3R 22559382 intron CG5278 - chr3R 22559458 intron CG5278 - chr3R_9_22555001 chr3R_22555001 RAL-461 1982 chr3R 22632862 22632906 chr3R 22632962 22633006 14 104 1.0 2.0 1.5 5.6 144 chr3R 22632862 intron loco - chr3R 22632934 intron loco - chr3R 22633006 intron loco - chr3R_14_22630001 chr3R_22630001 RAL-461 1983 chr3R 22796867 22796912 chr3R 22796980 22797025 10 108 4.5 5.0 4.8 1.7 158 chr3R 22796867 intergenic not near genes chr3R 22796946 intergenic not near genes chr3R 22797025 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-461 1984 chr3R 22827429 22827445 chr3R 22827525 22827541 5 95 3.5 4.0 3.8 1.0 112 chr3R 22827429 intergenic CR44350 - chr3R 22827485 intergenic CR44350 - chr3R 22827541 intergenic CR44350 - chr3R_5_22825001 chr3R_22825001 RAL-461 1985 chr3R 22846456 22846499 chr3R 22846563 22846606 16 102 1.5 4.5 3.0 4.0 150 chr3R 22846456 intergenic CG4704 - chr3R 22846531 intergenic CG4704 - chr3R 22846606 intergenic CG4704 - chr3R_16_22845001 chr3R_22845001 RAL-461 1986 chr3R 22850562 22850596 chr3R 22850692 22850726 7 130 1.0 1.0 1.0 3.5 164 chr3R 22850562 intergenic not near genes chr3R 22850644 intergenic CR43846 - chr3R 22850726 intergenic CR43846 - chr3R_7_22850001 chr3R_22850001 RAL-461 1987 chr3R 22860136 22860174 chr3R 22860248 22860286 6 109 1.5 0.5 1.0 3.0 150 chr3R 22860136 intergenic not near genes chr3R 22860211 intergenic not near genes chr3R 22860286 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-461 1988 chr3R 22863916 22863925 chr3R 22864003 22864023 4 93 3.0 2.5 2.8 1.1 107 chr3R 22863916 intergenic not near genes chr3R 22863970 intergenic not near genes chr3R 22864023 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-461 1989 chr3R 22880919 22880960 chr3R 22881077 22881118 18 157 1.5 2.5 2.0 6.0 199 chr3R 22880919 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881118 intergenic not near genes chr3R_18_22880001 chr3R_22880001 RAL-461 1990 chr3R 22881183 22881232 chr3R 22884906 22884957 Doc 8 3725 4.5 3.0 3.8 1.7 3774 chr3R 22881183 intergenic not near genes chr3R 22883070 intergenic not near genes chr3R 22884957 intergenic not near genes chr3R_8_22880001 chr3R_22880001 RAL-461 1991 chr3R 22913917 22913947 chr3R 22914011 22914037 6 96 0.5 1.5 1.0 3.0 120 chr3R 22913917 intron klg + chr3R 22913977 intron klg + chr3R 22914037 intron klg + chr3R_6_22910001 chr3R_22910001 RAL-461 1992 chr3R 22974294 22974297 chr3R 22974373 22974391 4 88 0.0 2.0 1.0 2.0 97 chr3R 22974294 intergenic not near genes chr3R 22974342 intergenic not near genes chr3R 22974391 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-461 1993 chr3R 23073642 23073687 chr3R 23073743 23073767 8 93 3.5 1.0 2.2 2.5 125 chr3R 23073642 intron CG13830 - chr3R 23073704 intron CG13830 - chr3R 23073767 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-461 1994 chr3R 23098897 23098936 chr3R 23099073 23099125 12 183 1.0 5.5 3.2 2.9 228 chr3R 23098897 intron,intron CG13830 -,CG6733 + chr3R 23099011 intron,exon CG13830 -,CG6733 + chr3R 23099125 intron,exon CG13830 -,CG6733 + chr3R_12_23095001 chr3R_23095001 RAL-461 1995 chr3R 23182485 23182650 chr3R 23182609 23182759 16 126 0.0 0.0 0.0 16.0 274 chr3R 23182485 intron Irk1 + chr3R 23182622 intron Irk1 + chr3R 23182759 intron Irk1 + chr3R_16_23180001 chr3R_23180001 RAL-461 1996 chr3R 23211961 23211992 chr3R 23212059 23212090 8 98 1.0 7.0 4.0 1.6 129 chr3R 23211961 intron cnc - chr3R 23212026 intron cnc - chr3R 23212090 intron cnc - chr3R_8_23210001 chr3R_23210001 RAL-461 1997 chr3R 23335418 23335464 chr3R 23335511 23335556 9 94 4.5 5.5 5.0 1.5 138 chr3R 23335418 intron pnt - chr3R 23335487 intron pnt - chr3R 23335556 intron pnt - chr3R_9_23335001 chr3R_23335001 RAL-461 1998 chr3R 23385587 23385611 chr3R 23385729 23385731 5 137 3.5 1.5 2.5 1.4 144 chr3R 23385587 intergenic not near genes chr3R 23385659 intergenic not near genes chr3R 23385731 intergenic not near genes chr3R_5_23385001 chr3R_23385001 RAL-461 1999 chr3R 23558383 23558427 chr3R 23560184 23560203 Bari1 10 1795 3.5 3.0 3.2 2.4 1820 chr3R 23558383 intron beat-IV + chr3R 23559293 intron beat-IV + chr3R 23560203 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-461 2000 chr3R 23564423 23564473 chr3R 23564587 23564637 13 161 5.0 3.5 4.2 2.5 214 chr3R 23564423 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564637 intron beat-IV + chr3R_13_23560001 chr3R_23560001 RAL-461 2001 chr3R 23613765 23613777 chr3R 23614100 23614124 4 344 1.5 3.0 2.2 1.2 359 chr3R 23613765 intron CG31145 - chr3R 23613944 intron CG31145 - chr3R 23614124 intron CG31145 - chr3R_4_23610001 chr3R_23610001 RAL-461 2002 chr3R 23808831 23808869 chr3R 23808919 23808936 6 89 5.0 1.0 3.0 1.5 105 chr3R 23808831 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808884 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808936 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_6_23805001 chr3R_23805001 RAL-461 2003 chr3R 23820642 23820666 chr3R 23820727 23820770 5 97 2.0 6.0 4.0 1.0 128 chr3R 23820642 5` UTR CG34355 + chr3R 23820706 5` UTR CG34355 + chr3R 23820770 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-461 2004 chr3R 23835396 23835415 chr3R 23844566 23844573 roo 4 9167 4.0 0.0 2.0 1.3 9177 chr3R 23835396 intron CG34355 + chr3R 23839984 intron CG34355 + chr3R 23844573 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-461 2005 chr3R 23851068 23851086 chr3R 23858755 23858768 opus 8 7686 3.0 10.0 6.5 1.1 7700 chr3R 23851068 3` UTR CG34355 + chr3R 23854918 intergenic not near genes chr3R 23858768 intergenic not near genes chr3R_8_23850001 chr3R_23850001 RAL-461 2006 chr3R 23944894 23944927 chr3R 23944999 23945025 6 104 5.5 5.0 5.2 1.0 131 chr3R 23944894 intron CG12268 - chr3R 23944960 intron CG12268 - chr3R 23945025 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-461 2007 chr3R 23949022 23949075 chr3R 23949119 23949172 10 92 3.5 4.0 3.8 2.1 150 chr3R 23949022 intergenic not near genes chr3R 23949097 intergenic not near genes chr3R 23949172 intergenic not near genes chr3R_10_23945001 chr3R_23945001 RAL-461 2008 chr3R 23967192 23967247 chr3R 23967780 23967835 17 580 2.0 4.5 3.2 4.0 643 chr3R 23967192 intron CG31140 + chr3R 23967514 intron CG31140 + chr3R 23967835 intron CG31140 + chr3R_17_23965001 chr3R_23965001 RAL-461 2009 chr3R 24007321 24007362 chr3R 24007463 24007487 4 140 1.5 0.5 1.0 2.0 166 chr3R 24007321 intron KrT95D - chr3R 24007404 intron KrT95D - chr3R 24007487 intron KrT95D - chr3R_4_24005001 chr3R_24005001 RAL-461 2010 chr3R 24011653 24011678 chr3R 24011751 24011781 5 102 0.0 7.0 3.5 1.1 128 chr3R 24011653 intron KrT95D - chr3R 24011717 intron KrT95D - chr3R 24011781 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-461 2011 chr3R 24021606 24021660 chr3R 24021716 24021762 12 104 3.0 5.5 4.2 2.3 156 chr3R 24021606 intron KrT95D - chr3R 24021684 intron KrT95D - chr3R 24021762 intron KrT95D - chr3R_12_24020001 chr3R_24020001 RAL-461 2012 chr3R 24076898 24076942 chr3R 24078385 24078429 hobo 9 1483 3.5 5.5 4.5 1.6 1531 chr3R 24076898 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078429 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-461 2013 chr3R 24096447 24096491 chr3R 24096988 24096993 4 532 1.5 2.5 2.0 1.3 546 chr3R 24096447 intron 4EHP - chr3R 24096720 intron 4EHP - chr3R 24096993 intron 4EHP - chr3R_4_24095001 chr3R_24095001 RAL-461 2014 chr3R 24199723 24199765 chr3R 24199823 24199865 9 97 4.5 3.0 3.8 1.9 142 chr3R 24199723 intron twin - chr3R 24199794 intron twin - chr3R 24199865 intron twin - chr3R_9_24195001 chr3R_24195001 RAL-461 2015 chr3R 24207210 24207230 chr3R 24212301 24212326 flea 7 5089 4.5 6.5 5.5 1.1 5116 chr3R 24207210 intron twin - chr3R 24209768 intron twin - chr3R 24212326 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-461 2016 chr3R 24303984 24304036 chr3R 24304084 24304136 16 97 6.0 2.5 4.2 3.1 152 chr3R 24303984 intron crb + chr3R 24304060 intron crb + chr3R 24304136 intron crb + chr3R_16_24300001 chr3R_24300001 RAL-461 2017 chr3R 24431591 24431614 chr3R 24431681 24431713 4 90 8.0 0.0 4.0 0.8 122 chr3R 24431591 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431713 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-461 2018 chr3R 24431617 24431627 chr3R 24431679 24431726 4 90 5.5 0.0 2.8 1.1 109 chr3R 24431617 intron nAChRalpha1 - chr3R 24431672 intron nAChRalpha1 - chr3R 24431726 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-461 2019 chr3R 24434232 24434267 chr3R 24434319 24434340 6 90 6.0 3.5 4.8 1.0 108 chr3R 24434232 intron nAChRalpha1 - chr3R 24434286 intron nAChRalpha1 - chr3R 24434340 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-461 2020 chr3R 24493041 24493089 chr3R 24493147 24493195 11 101 3.0 3.0 3.0 2.8 154 chr3R 24493041 intergenic not near genes chr3R 24493118 intergenic not near genes chr3R 24493195 intergenic not near genes chr3R_11_24490001 chr3R_24490001 RAL-461 2021 chr3R 24493281 24493308 chr3R 24493529 24493556 BS 7 248 7.5 7.0 7.2 0.9 275 chr3R 24493281 intergenic not near genes chr3R 24493418 intergenic not near genes chr3R 24493556 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-461 2022 chr3R 24527783 24527824 chr3R 24527894 24527935 16 110 3.0 2.5 2.8 4.2 152 chr3R 24527783 intergenic CG13618 +,CG6607 + chr3R 24527859 intergenic CG6607 +,CG13618 + chr3R 24527935 intergenic CG6607 +,CG13618 + chr3R_16_24525001 chr3R_24525001 RAL-461 2023 chr3R 24624365 24624379 chr3R 24624469 24624487 6 108 1.5 4.0 2.8 1.6 122 chr3R 24624365 intron Syx18 - chr3R 24624426 intron Syx18 - chr3R 24624487 exon Syx18 - chr3R_6_24620001 chr3R_24620001 RAL-461 2024 chr3R 24670142 24670199 chr3R 24670246 24670294 14 102 1.0 5.0 3.0 3.5 152 chr3R 24670142 intron slo + chr3R 24670218 intron slo + chr3R 24670294 intron slo + chr3R_14_24670001 chr3R_24670001 RAL-461 2025 chr3R 24854869 24854882 chr3R 24854971 24854984 4 102 5.5 5.0 5.2 0.6 115 chr3R 24854869 3` UTR,3` UTR nct +,HdacX - chr3R 24854926 3` UTR HdacX - chr3R 24854984 3` UTR HdacX - chr3R_4_24850001 chr3R_24850001 RAL-461 2026 chr3R 24927113 24927139 chr3R 24931924 24931950 Doc 9 4810 8.0 1.5 4.8 1.6 4837 chr3R 24927113 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931950 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-461 2027 chr3R 24927142 24927149 chr3R 24931917 24931945 Doc 4 4784 7.0 1.5 4.2 0.8 4803 chr3R 24927142 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-461 2028 chr3R 24974893 24974926 chr3R 24974992 24975025 14 98 6.5 6.0 6.2 1.9 132 chr3R 24974893 intergenic not near genes chr3R 24974959 intergenic not near genes chr3R 24975025 intergenic not near genes chr3R_14_24970001 chr3R_24970001 RAL-461 2029 chr3R 25004883 25004935 chr3R 25004985 25005016 10 99 2.5 1.5 2.0 3.3 133 chr3R 25004883 intron tnc + chr3R 25004950 intron tnc + chr3R 25005016 intron tnc + chr3R_10_25000001 chr3R_25000001 RAL-461 2030 chr3R 25019493 25019530 chr3R 25024200 25024242 7 4716 14.5 7.0 10.8 0.6 4749 chr3R 25019493 exon tnc + chr3R 25021868 3` UTR tnc + chr3R 25024242 exon beta4GalT7 + chr3R_7_25020001 chr3R_25020001 RAL-461 2031 chr3R 25081897 25081942 chr3R 25082103 25082148 9 205 0.0 0.5 0.2 7.5 251 chr3R 25081897 intergenic not near genes chr3R 25082022 intergenic not near genes chr3R 25082148 intergenic not near genes chr3R_9_25080001 chr3R_25080001 RAL-461 2032 chr3R 25166236 25166393 chr3R 25166336 25166464 7 92 0.5 0.5 0.5 4.7 228 chr3R 25166236 intergenic not near genes chr3R 25166350 intergenic not near genes chr3R 25166464 intergenic not near genes chr3R_7_25165001 chr3R_25165001 RAL-461 2033 chr3R 25196828 25196868 chr3R 25197020 25197062 6 193 3.0 5.5 4.2 1.2 234 chr3R 25196828 intergenic CG13653 + chr3R 25196945 intergenic CG13653 + chr3R 25197062 intergenic not near genes chr3R_6_25195001 chr3R_25195001 RAL-461 2034 chr3R 25209579 25209622 chr3R 25209681 25209709 13 99 0.5 4.0 2.2 4.1 130 chr3R 25209579 intron CG13654 + chr3R 25209644 intron CG13654 + chr3R 25209709 intron CG13654 + chr3R_13_25205001 chr3R_25205001 RAL-461 2035 chr3R 25235676 25235729 chr3R 25235786 25235839 24 108 4.0 4.5 4.2 4.6 163 chr3R 25235676 intergenic CG10420 - chr3R 25235758 intergenic CG10420 - chr3R 25235839 intergenic CG10420 - chr3R_24_25235001 chr3R_25235001 RAL-461 2036 chr3R 25296155 25296157 chr3R 25296256 25296258 4 101 11.5 5.0 8.2 0.4 103 chr3R 25296155 3` UTR CG31097 - chr3R 25296206 3` UTR CG31097 - chr3R 25296258 3` UTR CG31097 - chr3R_4_25295001 chr3R_25295001 RAL-461 2037 chr3R 25296172 25296192 chr3R 25296248 25296293 5 89 4.5 3.0 3.8 1.0 121 chr3R 25296172 3` UTR CG31097 - chr3R 25296232 3` UTR CG31097 - chr3R 25296293 3` UTR CG31097 - chr3R_5_25295001 chr3R_25295001 RAL-461 2038 chr3R 25368458 25368488 chr3R 25368591 25368621 16 136 3.0 0.5 1.8 5.7 163 chr3R 25368458 intron Fur1 - chr3R 25368540 intron Fur1 - chr3R 25368621 intron Fur1 - chr3R_16_25365001 chr3R_25365001 RAL-461 2039 chr3R 7773344 7773344 chr3R 25538124 25538124 10 17764780 12.0 10.0 11.0 0.8 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_10_16655001 chr3R_16655001 RAL-461 2040 chr3R 25608455 25608492 chr3R 25608566 25608615 9 114 2.0 0.0 1.0 4.5 160 chr3R 25608455 intron ymp - chr3R 25608535 intron ymp - chr3R 25608615 intron ymp - chr3R_9_25605001 chr3R_25605001 RAL-461 2041 chr3R 25612902 25612937 chr3R 25612989 25613034 13 94 3.0 7.0 5.0 2.2 132 chr3R 25612902 intron Npl4 - chr3R 25612968 intron Npl4 - chr3R 25613034 intron Npl4 - chr3R_13_25610001 chr3R_25610001 RAL-461 2042 chr3R 25661256 25661305 chr3R 25661349 25661393 8 94 0.5 2.5 1.5 3.2 137 chr3R 25661256 5` UTR Tnks - chr3R 25661324 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661393 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_8_25660001 chr3R_25660001 RAL-461 2043 chr3R 25725807 25725860 chr3R 25734987 25735040 roo 21 9177 4.5 8.0 6.2 2.9 9233 chr3R 25725807 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735040 intron LpR2 - chr3R_21_25730001 chr3R_25730001 RAL-461 2044 chr3R 25738645 25738659 chr3R 25738725 25738767 5 102 4.5 5.0 4.8 0.9 122 chr3R 25738645 intron LpR2 - chr3R 25738706 intron LpR2 - chr3R 25738767 intron LpR2 - chr3R_5_25735001 chr3R_25735001 RAL-461 2045 chr3R 25900881 25900920 chr3R 25903578 25903630 15 2702 20.0 25.5 22.8 0.6 2749 chr3R 25900881 exon CG31091 + chr3R 25902256 intergenic CG31091 +,CG31089 + chr3R 25903630 exon,intron CG31089 +,CR43259 - chr3R_15_25900001 chr3R_25900001 RAL-461 2046 chr3R 25997234 25997245 chr3R 25997341 25997352 4 107 3.0 0.5 1.8 1.4 118 chr3R 25997234 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997293 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997352 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_4_25995001 chr3R_25995001 RAL-461 2047 chr3R 26013831 26013862 chr3R 26013931 26013962 12 97 4.0 4.0 4.0 2.4 131 chr3R 26013831 intergenic not near genes chr3R 26013896 intergenic not near genes chr3R 26013962 intergenic not near genes chr3R_12_26010001 chr3R_26010001 RAL-461 2048 chr3R 26104065 26104090 chr3R 26105124 26105174 9 1063 22.5 36.5 29.5 0.3 1109 chr3R 26104065 intergenic not near genes chr3R 26104620 intergenic not near genes chr3R 26105174 intergenic not near genes chr3R_9_26100001 chr3R_26100001 RAL-461 2049 chr3R 26106517 26106566 chr3R 26106631 26106680 6 108 2.5 1.0 1.8 2.1 163 chr3R 26106517 intergenic CG31324 + chr3R 26106598 intergenic CG31324 + chr3R 26106680 intergenic CG31324 + chr3R_6_26105001 chr3R_26105001 RAL-461 2050 chr3R 26122455 26122479 chr3R 26122541 26122543 8 83 5.5 3.5 4.5 1.5 88 chr3R 26122455 intron CG31324 + chr3R 26122499 intron CG31324 + chr3R 26122543 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-461 2051 chr3R 26153024 26153053 chr3R 26153129 26153141 7 103 3.0 0.0 1.5 2.8 117 chr3R 26153024 intergenic not near genes chr3R 26153082 intergenic not near genes chr3R 26153141 intergenic not near genes chr3R_7_26150001 chr3R_26150001 RAL-461 2052 chr3R 26235496 26235519 chr3R 26235573 26235575 4 73 1.0 3.0 2.0 1.3 79 chr3R 26235496 5` UTR CR42745 + chr3R 26235536 5` UTR CR42745 + chr3R 26235575 5` UTR CR42745 + chr3R_4_26235001 chr3R_26235001 RAL-461 2053 chr3R 26292092 26292136 chr3R 26292192 26292206 15 97 4.0 4.0 4.0 3.0 114 chr3R 26292092 intergenic not near genes chr3R 26292149 intergenic not near genes chr3R 26292206 intergenic not near genes chr3R_15_26290001 chr3R_26290001 RAL-461 2054 chr3R 26336079 26336131 chr3R 26336185 26336219 9 102 1.0 4.5 2.8 2.4 140 chr3R 26336079 intron CG33970 + chr3R 26336149 intron CG33970 + chr3R 26336219 intron CG33970 + chr3R_9_26335001 chr3R_26335001 RAL-461 2055 chr3R 26376322 26376358 chr3R 26385485 26385503 roo 7 9166 2.5 0.5 1.5 2.8 9181 chr3R 26376322 intergenic not near genes chr3R 26380912 intergenic not near genes chr3R 26385503 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-461 2056 chr3R 26482341 26482386 chr3R 26482438 26482454 17 88 5.5 3.5 4.5 3.1 113 chr3R 26482341 intron plum - chr3R 26482398 intron plum - chr3R 26482454 intron plum - chr3R_17_26480001 chr3R_26480001 RAL-461 2057 chr3R 26491478 26491524 chr3R 26491680 26491726 15 193 2.0 7.5 4.8 2.6 248 chr3R 26491478 intron plum - chr3R 26491602 intron plum - chr3R 26491726 intron plum - chr3R_15_26490001 chr3R_26490001 RAL-461 2058 chr3R 26510494 26510535 chr3R 26519575 26519590 roo 8 9075 4.5 7.0 5.8 1.2 9096 chr3R 26510494 intron plum - chr3R 26515042 intron plum - chr3R 26519590 intron,5` UTR plum -,CR45226 + chr3R_8_26515001 chr3R_26515001 RAL-461 2059 chr3R 26529328 26529379 chr3R 26529431 26529456 15 97 2.5 0.0 1.2 6.8 128 chr3R 26529328 intron plum - chr3R 26529392 intron plum - chr3R 26529456 intron plum - chr3R_15_26525001 chr3R_26525001 RAL-461 2060 chr3R 26540979 26541031 chr3R 26541078 26541129 7 97 0.0 1.0 0.5 4.7 150 chr3R 26540979 intron scrib + chr3R 26541054 intron scrib + chr3R 26541129 intron scrib + chr3R_7_26540001 chr3R_26540001 RAL-461 2061 chr3R 26558337 26558350 chr3R 26565647 26565682 Stalker4 6 7323 2.5 3.5 3.0 1.5 7345 chr3R 26558337 intron scrib + chr3R 26562010 intron scrib + chr3R 26565682 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-461 2062 chr3R 26641623 26641654 chr3R 26641730 26641749 4 102 6.5 3.0 4.8 0.7 126 chr3R 26641623 intergenic not near genes chr3R 26641686 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-461 2063 chr3R 26642740 26642757 chr3R 26643123 26643171 jockey 7 409 4.5 4.5 4.5 1.3 431 chr3R 26642740 intergenic not near genes chr3R 26642956 intergenic not near genes chr3R 26643171 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-461 2064 chr3R 26682596 26682642 chr3R 26682736 26682784 5 141 7.5 3.5 5.5 0.8 188 chr3R 26682596 intergenic not near genes chr3R 26682690 intergenic not near genes chr3R 26682784 intergenic not near genes chr3R_5_26680001 chr3R_26680001 RAL-461 2065 chr3R 26810544 26810569 chr3R 26811036 26811052 roo 11 502 6.0 1.0 3.5 2.4 508 chr3R 26810544 intron Tl + chr3R 26810798 intron Tl + chr3R 26811052 intron Tl + chr3R_11_26810001 chr3R_26810001 RAL-461 2066 chr3R 26983799 26983833 chr3R 26983891 26983936 6 99 3.5 2.5 3.0 1.5 137 chr3R 26983799 intron CG14253 + chr3R 26983868 intron CG14253 + chr3R 26983936 intron CG14253 + chr3R_6_26980001 chr3R_26980001 RAL-461 2067 chr3R 27007390 27007417 chr3R 27016545 27016572 roo 6 9150 7.0 5.5 6.2 0.8 9182 chr3R 27007390 intron RYa-R + chr3R 27011981 intron RYa-R + chr3R 27016572 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-461 2068 chr3R 27007418 27007424 chr3R 27016537 27016558 roo 5 9143 5.0 4.5 4.8 0.9 9140 chr3R 27007418 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016558 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-461 2069 chr3R 27027664 27027669 chr3R 27027768 27027773 5 104 8.0 3.0 5.5 0.8 109 chr3R 27027664 intron RYa-R + chr3R 27027718 intron RYa-R + chr3R 27027773 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-461 2070 chr3R 27027672 27027697 chr3R 27027766 27027797 4 100 4.5 2.5 3.5 0.9 125 chr3R 27027672 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027797 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-461 2071 chr3R 27028701 27028754 chr3R 27028800 27028853 15 98 1.5 2.5 2.0 5.0 152 chr3R 27028701 intron RYa-R + chr3R 27028777 intron RYa-R + chr3R 27028853 intron RYa-R + chr3R_15_27025001 chr3R_27025001 RAL-461 2072 chr3R 27051838 27051862 chr3R 27051955 27051994 7 125 2.0 4.5 3.2 1.7 156 chr3R 27051838 intron RYa-R + chr3R 27051916 intron RYa-R + chr3R 27051994 intron RYa-R + chr3R_7_27050001 chr3R_27050001 RAL-461 2073 chr3R 27140511 27140534 chr3R 27148135 27148159 412 4 7623 1.5 6.5 4.0 0.8 7648 chr3R 27140511 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148159 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-461 2074 chr3R 27315994 27315999 chr3R 27316073 27316094 5 90 9.0 1.5 5.2 0.8 100 chr3R 27315994 intron CG3339 - chr3R 27316044 intron CG3339 - chr3R 27316094 exon CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-461 2075 chr3R 27329461 27329493 chr3R 27329552 27329590 7 96 2.0 1.5 1.8 2.5 129 chr3R 27329461 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329590 intergenic CG3330 - chr3R_7_27325001 chr3R_27325001 RAL-461 2076 chr3R 27342777 27342826 chr3R 27351378 27351427 Tirant 4 8601 1.5 5.0 3.2 1.0 8650 chr3R 27342777 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351427 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-461 2077 chr3R 27356491 27356519 chr3R 27356592 27356607 6 99 0.0 1.5 0.8 3.3 116 chr3R 27356491 intron CG42534 + chr3R 27356549 intron CG42534 + chr3R 27356607 intron CG42534 + chr3R_6_27355001 chr3R_27355001 RAL-461 2078 chr3R 27492357 27492393 chr3R 27492464 27492490 7 106 4.5 2.0 3.2 1.7 133 chr3R 27492357 intergenic not near genes chr3R 27492424 intergenic not near genes chr3R 27492490 intergenic not near genes chr3R_7_27490001 chr3R_27490001 RAL-461 2079 chr3R 27496576 27496601 chr3R 27496700 27496700 8 120 8.0 6.0 7.0 1.0 124 chr3R 27496576 intergenic not near genes chr3R 27496638 intergenic not near genes chr3R 27496700 intergenic not near genes chr3R_8_27495001 chr3R_27495001 RAL-461 2080 chr3R 27521137 27521181 chr3R 27530366 27530410 roo 13 9224 6.0 6.5 6.2 1.8 9273 chr3R 27521137 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530410 intron CG12885 + chr3R_13_27525001 chr3R_27525001 RAL-461 2081 chr3R 27666513 27666563 chr3R 27666710 27666760 20 196 3.0 5.5 4.2 3.8 247 chr3R 27666513 exon unc80 + chr3R 27666636 intron unc80 + chr3R 27666760 intron unc80 + chr3R_20_27665001 chr3R_27665001 RAL-461 2082 chr3R 27706762 27706807 chr3R 27706855 27706904 11 91 4.0 3.0 3.5 2.4 142 chr3R 27706762 intergenic CG12428 -,CG12877 + chr3R 27706833 intergenic CG12428 -,CG12877 + chr3R 27706904 intergenic CG12428 -,CG12877 + chr3R_11_27705001 chr3R_27705001 RAL-461 2083 chr3R 27718457 27718510 chr3R 27718591 27718621 14 132 3.5 3.0 3.2 3.3 164 chr3R 27718457 intergenic not near genes chr3R 27718539 intergenic not near genes chr3R 27718621 intergenic not near genes chr3R_14_27715001 chr3R_27715001 RAL-461 2084 chr3R 27725587 27725599 chr3R 27731045 27731048 I-element 4 5458 2.0 0.5 1.2 1.8 5461 chr3R 27725587 intergenic not near genes chr3R 27728318 intergenic not near genes chr3R 27731048 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-461 2085 chr3R 27752750 27752785 chr3R 27753143 27753180 11 397 2.0 5.5 3.8 2.3 430 chr3R 27752750 intergenic not near genes chr3R 27752965 intergenic not near genes chr3R 27753180 intergenic not near genes chr3R_11_27750001 chr3R_27750001 RAL-461 2086 chr3R 27779269 27779284 chr3R 27779367 27779377 4 98 1.0 2.0 1.5 1.6 108 chr3R 27779269 exon CG34353 - chr3R 27779323 intron CG34353 - chr3R 27779377 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-461 2087 chr3R 27799923 27799964 chr3R 27800024 27800066 17 99 2.5 7.0 4.8 2.9 143 chr3R 27799923 intron CG34353 - chr3R 27799994 intron CG34353 - chr3R 27800066 intron CG34353 - chr3R_17_27795001 chr3R_27795001 RAL-461 2088 chr3R 27830740 27830783 chr3R 27830867 27830910 14 130 30.5 33.0 31.8 0.4 170 chr3R 27830740 intron CG34353 - chr3R 27830825 intron CG34353 - chr3R 27830910 intron CG34353 - chr3R_14_27830001 chr3R_27830001 RAL-461 2089 chr3R 27856747 27856792 chr3R 27858250 27858264 hopper2 18 1499 5.0 4.0 4.5 3.3 1517 chr3R 27856747 intron CG34353 - chr3R 27857506 intron CG34353 - chr3R 27858264 intron CG34353 - chr3R_18_27855001 chr3R_27855001 RAL-461 2090 chr3R 27861102 27861116 chr3R 27861197 27861207 5 95 1.0 1.5 1.2 2.3 105 chr3R 27861102 intron CG34353 - chr3R 27861154 intron CG34353 - chr3R 27861207 intron CG34353 - chr3R_5_27860001 chr3R_27860001 RAL-461 2091 chr3R 27862937 27862985 chr3R 27868262 27868310 Transpac 11 5315 2.0 4.5 3.2 2.6 5373 chr3R 27862937 intron CG34353 - chr3R 27865624 intron CG34353 - chr3R 27868310 intron CG34353 - chr3R_11_27865001 chr3R_27865001 RAL-461 2092 chr3R 27875688 27875730 chr3R 27882763 27882797 297 15 7072 3.0 5.5 4.2 2.9 7109 chr3R 27875688 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882797 intron CG34353 - chr3R_15_27875001 chr3R_27875001 RAL-461 2093 chr3R 28054442 28054473 chr3R 28054517 28054569 11 89 4.0 3.5 3.8 2.3 127 chr3R 28054442 intron CG34362 + chr3R 28054506 intron CG34362 + chr3R 28054569 intron CG34362 + chr3R_11_28050001 chr3R_28050001 RAL-461 2094 chr3R 28068477 28068532 chr3R 28073934 28073975 I-element 6 5458 0.5 2.5 1.5 2.4 5498 chr3R 28068477 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073975 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-461 2095 chr3R 28173654 28173683 chr3R 28181104 28181112 mdg1 7 7446 5.0 5.5 5.2 1.1 7458 chr3R 28173654 intron CG34354 + chr3R 28177383 intron CG34354 + chr3R 28181112 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-461 2096 chr3R 28173685 28173701 chr3R 28181102 28181151 mdg1 7 7444 3.0 5.5 4.2 1.3 7466 chr3R 28173685 intron CG34354 + chr3R 28177418 intron CG34354 + chr3R 28181151 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-461 2097 chr3R 28302090 28302133 chr3R 28302549 28302562 jockey 8 454 12.0 10.5 11.2 0.7 472 chr3R 28302090 intergenic not near genes chr3R 28302326 intergenic not near genes chr3R 28302562 intergenic not near genes chr3R_8_28300001 chr3R_28300001 RAL-461 2098 chr3R 28352495 28352540 chr3R 28352855 28352900 6 358 2.0 4.5 3.2 1.4 405 chr3R 28352495 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352900 exon Or98b + chr3R_6_28350001 chr3R_28350001 RAL-461 2099 chr3R 28368900 28368911 chr3R 28368993 28368993 5 102 2.0 2.5 2.2 1.6 93 chr3R 28368900 intergenic not near genes chr3R 28368946 intergenic not near genes chr3R 28368993 intergenic not near genes chr3R_5_28365001 chr3R_28365001 RAL-461 2100 chr3R 28393685 28393730 chr3R 28393797 28393850 15 118 2.0 4.0 3.0 3.8 165 chr3R 28393685 intergenic not near genes chr3R 28393768 intergenic not near genes chr3R 28393850 intergenic not near genes chr3R_15_28390001 chr3R_28390001 RAL-461 2101 chr3R 28406564 28406599 chr3R 28406861 28406892 6 296 3.5 2.0 2.8 1.6 328 chr3R 28406564 intergenic not near genes chr3R 28406728 intergenic not near genes chr3R 28406892 intergenic not near genes chr3R_6_28405001 chr3R_28405001 RAL-461 2102 chr3R 28424063 28424112 chr3R 28424221 28424265 27 156 4.5 2.0 3.2 6.4 202 chr3R 28424063 intron beat-VI + chr3R 28424164 intron beat-VI + chr3R 28424265 intron beat-VI + chr3R_27_28420001 chr3R_28420001 RAL-461 2103 chr3R 28478487 28478519 chr3R 28478573 28478611 8 91 1.5 4.0 2.8 2.1 124 chr3R 28478487 intergenic not near genes chr3R 28478549 intergenic not near genes chr3R 28478611 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-461 2104 chr3R 28479123 28479166 chr3R 28479241 28479284 8 117 1.5 4.5 3.0 2.0 161 chr3R 28479123 intergenic not near genes chr3R 28479204 intergenic not near genes chr3R 28479284 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-461 2105 chr3R 28565950 28565970 chr3R 28566042 28566050 5 84 3.0 2.0 2.5 1.4 100 chr3R 28565950 intergenic not near genes chr3R 28566000 intergenic not near genes chr3R 28566050 intergenic not near genes chr3R_5_28565001 chr3R_28565001 RAL-461 2106 chr3R 28633172 28633215 chr3R 28633272 28633279 14 96 7.0 1.0 4.0 2.8 107 chr3R 28633172 intron CG10011 - chr3R 28633226 intron CG10011 - chr3R 28633279 intron CG10011 - chr3R_14_28630001 chr3R_28630001 RAL-461 2107 chr3R 28758268 28758303 chr3R 28763905 28763910 roo 7 5630 7.0 0.0 3.5 1.6 5642 chr3R 28758268 intergenic aqrs - chr3R 28761089 intergenic not near genes chr3R 28763910 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-461 2108 chr3R 28792866 28792904 chr3R 28797966 28798004 jockey 6 5101 1.0 1.5 1.2 2.7 5138 chr3R 28792866 intergenic not near genes chr3R 28795435 intergenic not near genes chr3R 28798004 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-461 2109 chr3R 28811566 28811604 chr3R 28811717 28811770 13 164 5.0 4.5 4.8 2.2 204 chr3R 28811566 intergenic wdn - chr3R 28811668 intergenic wdn -,CG1646 + chr3R 28811770 intergenic CG1646 +,wdn - chr3R_13_28810001 chr3R_28810001 RAL-461 2110 chr3R 28814446 28814468 chr3R 28814582 28814598 8 134 9.0 4.0 6.5 1.1 152 chr3R 28814446 3` UTR CG1646 + chr3R 28814522 3` UTR CG1646 + chr3R 28814598 3` UTR CG1646 + chr3R_8_28810001 chr3R_28810001 RAL-461 2111 chr3R 28830866 28830919 chr3R 28830964 28831017 12 96 4.5 6.0 5.2 1.9 151 chr3R 28830866 intron WASp - chr3R 28830942 intron WASp - chr3R 28831017 intron WASp - chr3R_12_28830001 chr3R_28830001 RAL-461 2112 chr3R 21907534 21907536 chr3R 28831799 28831802 17 6924266 22.0 6.0 14.0 1.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-461 2113 chr3R 28960489 28960543 chr3R 28960594 28960648 22 103 2.5 5.0 3.8 4.6 159 chr3R 28960489 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960648 intron CG14521 - chr3R_22_28960001 chr3R_28960001 RAL-461 2114 chr3R 28985028 28985048 chr3R 28985130 28985150 5 98 2.5 2.0 2.2 1.6 122 chr3R 28985028 intergenic not near genes chr3R 28985089 intergenic not near genes chr3R 28985150 intergenic not near genes chr3R_5_28985001 chr3R_28985001 RAL-461 2115 chr3R 29032725 29032777 chr3R 29032822 29032863 8 86 3.0 2.0 2.5 2.3 138 chr3R 29032725 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032794 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032863 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_8_29030001 chr3R_29030001 RAL-461 2116 chr3R 29070034 29070078 chr3R 29070135 29070172 17 100 5.5 6.5 6.0 2.4 138 chr3R 29070034 intron CG11873 + chr3R 29070103 intron CG11873 + chr3R 29070172 intron CG11873 + chr3R_17_29070001 chr3R_29070001 RAL-461 2117 chr3R 29079364 29079407 chr3R 29080756 29080795 NOF 10 1391 5.5 4.0 4.8 1.7 1431 chr3R 29079364 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080795 intron CG11873 + chr3R_10_29080001 chr3R_29080001 RAL-461 2118 chr3R 29140147 29140185 chr3R 29140270 29140309 10 124 1.5 2.0 1.8 3.6 162 chr3R 29140147 intron CG14516 + chr3R 29140228 intron CG14516 + chr3R 29140309 intron CG14516 + chr3R_10_29140001 chr3R_29140001 RAL-461 2119 chr3R 29213041 29213090 chr3R 29213144 29213193 15 100 5.5 6.0 5.8 2.2 152 chr3R 29213041 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213193 intergenic not near genes chr3R_15_29210001 chr3R_29210001 RAL-461 2120 chr3R 29249631 29249651 chr3R 29249716 29249758 7 96 2.0 4.0 3.0 1.8 127 chr3R 29249631 intron SP1029 - chr3R 29249694 intron SP1029 - chr3R 29249758 intron SP1029 - chr3R_7_29245001 chr3R_29245001 RAL-461 2121 chr3R 29256262 29256292 chr3R 29256346 29256382 7 91 2.0 1.5 1.8 2.5 120 chr3R 29256262 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256382 intergenic CG45544 + chr3R_7_29255001 chr3R_29255001 RAL-461 2122 chr3R 29319808 29319850 chr3R 29320147 29320178 jockey 13 334 4.5 4.0 4.2 2.5 370 chr3R 29319808 intergenic Cnx99A - chr3R 29319993 intergenic Cnx99A - chr3R 29320178 intergenic not near genes chr3R_13_29315001 chr3R_29315001 RAL-461 2123 chr3R 29332263 29332303 chr3R 29332360 29332400 17 94 4.0 2.5 3.2 4.0 137 chr3R 29332263 intergenic not near genes chr3R 29332332 intergenic not near genes chr3R 29332400 intergenic not near genes chr3R_17_29330001 chr3R_29330001 RAL-461 2124 chr3R 29449352 29449361 chr3R 29449441 29449453 7 94 6.0 5.0 5.5 1.1 101 chr3R 29449352 intron Ptp99A + chr3R 29449402 intron Ptp99A + chr3R 29449453 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-461 2125 chr3R 29449362 29449380 chr3R 29449434 29449477 9 91 3.0 4.0 3.5 2.0 115 chr3R 29449362 intron Ptp99A + chr3R 29449420 intron Ptp99A + chr3R 29449477 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-461 2126 chr3R 29452165 29452185 chr3R 29452233 29452234 4 63 3.5 4.5 4.0 0.8 69 chr3R 29452165 intron Ptp99A + chr3R 29452200 intron Ptp99A + chr3R 29452234 intron Ptp99A + chr3R_4_29450001 chr3R_29450001 RAL-461 2127 chr3R 29505873 29505922 chr3R 29505970 29506019 9 94 3.0 3.5 3.2 2.1 146 chr3R 29505873 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506019 intergenic not near genes chr3R_9_29505001 chr3R_29505001 RAL-461 2128 chr3R 29581537 29581555 chr3R 29581638 29581654 4 100 3.0 1.0 2.0 1.3 117 chr3R 29581537 intergenic not near genes chr3R 29581596 intergenic not near genes chr3R 29581654 intergenic not near genes chr3R_4_29580001 chr3R_29580001 RAL-461 2129 chr3R 29718141 29718169 chr3R 29718237 29718240 8 90 3.0 6.0 4.5 1.5 99 chr3R 29718141 intergenic not near genes chr3R 29718190 intergenic CG15506 + chr3R 29718240 intergenic CG15506 + chr3R_8_29715001 chr3R_29715001 RAL-461 2130 chr3R 29738247 29738262 chr3R 29739734 29739738 hobo 6 1484 4.0 2.5 3.2 1.4 1491 chr3R 29738247 intergenic CG1969 +,CG7598 + chr3R 29738992 intron CG1969 + chr3R 29739738 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-461 2131 chr3R 29738265 29738290 chr3R 29739732 29739775 hobo 7 1479 1.5 2.5 2.0 2.3 1510 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739020 intron CG1969 + chr3R 29739775 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-461 2132 chr3R 29880605 29880616 chr3R 29880667 29880671 6 70 1.0 2.0 1.5 2.4 66 chr3R 29880605 intron CG31038 + chr3R 29880638 intron CG31038 + chr3R 29880671 intron CG31038 + chr3R_6_29880001 chr3R_29880001 RAL-461 2133 chr3R 29882004 29882012 chr3R 29891181 29891189 roo 5 9176 10.0 6.0 8.0 0.6 9185 chr3R 29882004 intron CG31038 + chr3R 29886596 intron CG31038 + chr3R 29891189 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-461 2134 chr3R 29882022 29882044 chr3R 29891178 29891221 roo 10 9173 6.0 4.0 5.0 1.7 9199 chr3R 29882022 intron CG31038 + chr3R 29886622 intron CG31038 + chr3R 29891221 intron CG31038 + chr3R_10_29885001 chr3R_29885001 RAL-461 2135 chr3R 29963472 29963510 chr3R 29963589 29963632 9 120 0.5 2.5 1.5 3.6 160 chr3R 29963472 intron TkR99D - chr3R 29963552 intron TkR99D - chr3R 29963632 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-461 2136 chr3R 30026695 30026707 chr3R 30026804 30026816 5 108 5.0 6.0 5.5 0.8 121 chr3R 30026695 intron Axn + chr3R 30026756 intron Axn + chr3R 30026816 intron Axn + chr3R_5_30025001 chr3R_30025001 RAL-461 2137 chr3R 30026717 30026736 chr3R 30026803 30026839 6 99 3.5 6.0 4.8 1.0 122 chr3R 30026717 intron Axn + chr3R 30026778 intron Axn + chr3R 30026839 intron Axn + chr3R_6_30025001 chr3R_30025001 RAL-461 2138 chr3R 30084836 30084878 chr3R 30086323 30086365 hobo 6 1487 1.5 2.5 2.0 2.0 1529 chr3R 30084836 intron sima + chr3R 30085600 intron sima + chr3R 30086365 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-461 2139 chr3R 30088613 30088641 chr3R 30088719 30088747 4 106 0.0 3.0 1.5 1.6 134 chr3R 30088613 intron sima + chr3R 30088680 intron sima + chr3R 30088747 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-461 2140 chr3R 30112934 30112979 chr3R 30113030 30113075 12 93 1.5 3.5 2.5 3.4 141 chr3R 30112934 intron sima + chr3R 30113004 intron sima + chr3R 30113075 intron sima + chr3R_12_30110001 chr3R_30110001 RAL-461 2141 chr3R 30132843 30132854 chr3R 30132904 30132956 5 83 5.5 4.0 4.8 0.9 113 chr3R 30132843 intergenic Tpi -,CG31029 - chr3R 30132900 intergenic Tpi - chr3R 30132956 intergenic Tpi - chr3R_5_30130001 chr3R_30130001 RAL-461 2142 chr3R 30147846 30147871 chr3R 30147942 30147977 12 105 0.0 7.0 3.5 2.7 131 chr3R 30147846 intron AdoR - chr3R 30147912 intron AdoR - chr3R 30147977 intron AdoR - chr3R_12_30145001 chr3R_30145001 RAL-461 2143 chr3R 30170744 30170791 chr3R 30170851 30170890 17 105 3.5 2.0 2.8 4.5 146 chr3R 30170744 intron CG31028 - chr3R 30170817 intron CG31028 - chr3R 30170890 intron CG31028 - chr3R_17_30170001 chr3R_30170001 RAL-461 2144 chr3R 30177744 30177775 chr3R 30177862 30177912 5 132 0.5 0.5 0.5 3.3 168 chr3R 30177744 intergenic CG1983 -,CG15530 + chr3R 30177828 intergenic CG15530 +,CG1983 - chr3R 30177912 5` UTR CG15530 + chr3R_5_30175001 chr3R_30175001 RAL-461 2145 chr3R 30212692 30212761 chr3R 30212819 30212871 5 114 0.5 1.0 0.8 2.8 179 chr3R 30212692 intergenic CecA2 + chr3R 30212782 intergenic CecA2 + chr3R 30212871 intergenic CecA2 +,CecB - chr3R_5_30210001 chr3R_30210001 RAL-461 2146 chr3R 30260357 30260367 chr3R 30260452 30260463 5 94 7.0 3.5 5.2 0.8 106 chr3R 30260357 intergenic not near genes chr3R 30260410 intergenic not near genes chr3R 30260463 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-461 2147 chr3R 30260370 30260395 chr3R 30260446 30260491 6 93 3.0 2.5 2.8 1.6 121 chr3R 30260370 intergenic not near genes chr3R 30260430 intergenic not near genes chr3R 30260491 intergenic not near genes chr3R_6_30260001 chr3R_30260001 RAL-461 2148 chr3R 30268397 30268433 chr3R 30268498 30268534 6 94 4.0 3.0 3.5 1.3 137 chr3R 30268397 intergenic not near genes chr3R 30268466 intergenic not near genes chr3R 30268534 intergenic not near genes chr3R_6_30265001 chr3R_30265001 RAL-461 2149 chr3R 30332039 30332055 chr3R 30332109 30332154 6 86 5.0 1.0 3.0 1.5 115 chr3R 30332039 intron hdc + chr3R 30332096 intron hdc + chr3R 30332154 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-461 2150 chr3R 30375526 30375558 chr3R 30383169 30383201 412 5 7643 3.5 1.0 2.2 1.6 7675 chr3R 30375526 intergenic not near genes chr3R 30379364 intergenic not near genes chr3R 30383201 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-461 2151 chr3R 30396202 30396240 chr3R 30404482 30404516 roo 9 8278 3.0 6.0 4.5 1.6 8314 chr3R 30396202 intergenic not near genes chr3R 30400359 intergenic not near genes chr3R 30404516 5` UTR CR45570 + chr3R_9_30400001 chr3R_30400001 RAL-461 2152 chr3R 30456396 30456422 chr3R 30456471 30456522 11 98 3.5 6.0 4.8 1.9 126 chr3R 30456396 intergenic CG2224 - chr3R 30456459 3` UTR CG2224 - chr3R 30456522 3` UTR CG2224 - chr3R_11_30455001 chr3R_30455001 RAL-461 2153 chr3R 30457992 30458042 chr3R 30458092 30458131 12 96 6.0 3.5 4.8 2.1 139 chr3R 30457992 intron CG2224 - chr3R 30458062 intron CG2224 - chr3R 30458131 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-461 2154 chr3R 30480466 30480504 chr3R 30482945 30482992 jockey 10 2483 0.0 6.0 3.0 2.5 2526 chr3R 30480466 intron PH4alphaEFB + chr3R 30481729 intron PH4alphaEFB + chr3R 30482992 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-461 2155 chr3R 30488103 30488119 chr3R 30488201 30488218 4 99 3.5 0.0 1.8 1.4 115 chr3R 30488103 intergenic Jon99Fii - chr3R 30488160 intergenic Jon99Fii - chr3R 30488218 intergenic Jon99Fii - chr3R_4_30485001 chr3R_30485001 RAL-461 2156 chr3R 30498400 30498430 chr3R 30498620 30498650 8 217 0.0 6.0 3.0 2.0 250 chr3R 30498400 intron PH4alphaNE1 - chr3R 30498525 intron PH4alphaNE1 - chr3R 30498650 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-461 2157 chr3R 30549003 30549038 chr3R 30549115 30549120 7 105 2.0 3.5 2.8 1.8 117 chr3R 30549003 intron tmod + chr3R 30549062 intron tmod + chr3R 30549120 intron tmod + chr3R_7_30545001 chr3R_30545001 RAL-461 2158 chr3R 30554404 30554419 chr3R 30554500 30554515 4 96 2.5 5.5 4.0 0.8 111 chr3R 30554404 intron tmod + chr3R 30554460 intron tmod + chr3R 30554515 intron tmod + chr3R_4_30550001 chr3R_30550001 RAL-461 2159 chr3R 30592500 30592531 chr3R 30592620 30592634 9 120 1.5 2.0 1.8 3.2 134 chr3R 30592500 intergenic CG2246 - chr3R 30592567 intergenic CG2246 - chr3R 30592634 intergenic CG2246 - chr3R_9_30590001 chr3R_30590001 RAL-461 2160 chr3R 30679506 30679550 chr3R 30686995 30687024 blood 13 7483 1.0 7.0 4.0 2.6 7518 chr3R 30679506 intergenic not near genes chr3R 30683265 intergenic not near genes chr3R 30687024 intergenic not near genes chr3R_13_30680001 chr3R_30680001 RAL-461 2161 chr3R 30690145 30690178 chr3R 30690248 30690273 6 100 3.5 2.5 3.0 1.5 128 chr3R 30690145 intergenic Spn100A + chr3R 30690209 intergenic Spn100A + chr3R 30690273 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-461 2162 chr3R 30737927 30737972 chr3R 30738041 30738086 12 108 3.5 2.0 2.8 3.2 159 chr3R 30737927 intergenic not near genes chr3R 30738006 intergenic not near genes chr3R 30738086 intergenic not near genes chr3R_12_30735001 chr3R_30735001 RAL-461 2163 chr3R 30818790 30818841 chr3R 30820375 30820423 1360 12 1584 7.5 0.5 4.0 2.4 1633 chr3R 30818790 intron cindr + chr3R 30819606 intron cindr + chr3R 30820423 intron cindr + chr3R_12_30815001 chr3R_30815001 RAL-461 2164 chr3R 30823393 30823413 chr3R 30823507 30823511 5 108 3.0 3.5 3.2 1.2 118 chr3R 30823393 intron cindr + chr3R 30823452 intron cindr + chr3R 30823511 intron cindr + chr3R_5_30820001 chr3R_30820001 RAL-461 2165 chr3R 30859385 30859426 chr3R 30859483 30859524 20 95 4.0 3.5 3.8 4.2 139 chr3R 30859385 intergenic not near genes chr3R 30859454 intergenic not near genes chr3R 30859524 intergenic not near genes chr3R_20_30855001 chr3R_30855001 RAL-461 2166 chr3R 30887668 30887718 chr3R 30887769 30887814 24 96 3.5 5.0 4.2 4.6 146 chr3R 30887668 intron Sap-r - chr3R 30887741 intron Sap-r - chr3R 30887814 intron Sap-r - chr3R_24_30885001 chr3R_30885001 RAL-461 2167 chr3R 30901410 30901456 chr3R 30901509 30901560 21 103 9.0 5.0 7.0 2.6 150 chr3R 30901410 intron CG33483 - chr3R 30901485 intron CG33483 - chr3R 30901560 intron CG33483 - chr3R_21_30900001 chr3R_30900001 RAL-461 2168 chr3R 30948060 30948101 chr3R 30948271 30948291 13 207 2.5 2.0 2.2 4.1 231 chr3R 30948060 intergenic not near genes chr3R 30948176 intergenic not near genes chr3R 30948291 intergenic not near genes chr3R_13_30945001 chr3R_30945001 RAL-461 2169 chr3R 31026500 31026523 chr3R 31026586 31026599 4 91 2.0 7.0 4.5 0.7 99 chr3R 31026500 intergenic not near genes chr3R 31026550 intergenic not near genes chr3R 31026599 intergenic not near genes chr3R_4_31025001 chr3R_31025001 RAL-461 2170 chr3R 31042100 31042113 chr3R 31042207 31042220 4 107 7.5 7.0 7.2 0.5 120 chr3R 31042100 intron CanA1 + chr3R 31042160 intron CanA1 + chr3R 31042220 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-461 2171 chr3R 31042132 31042144 chr3R 31042199 31042251 4 96 3.0 5.5 4.2 0.8 119 chr3R 31042132 intron CanA1 + chr3R 31042192 intron CanA1 + chr3R 31042251 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-461 2172 chr3R 31074211 31074257 chr3R 31081828 31081875 springer 9 7613 4.0 0.5 2.2 2.8 7664 chr3R 31074211 intron Sox100B + chr3R 31078043 intron Sox100B + chr3R 31081875 intron Sox100B + chr3R_9_31075001 chr3R_31075001 RAL-461 2173 chr3R 31087651 31087697 chr3R 31087856 31087865 10 194 7.5 7.0 7.2 1.2 214 chr3R 31087651 intergenic not near genes chr3R 31087758 intergenic not near genes chr3R 31087865 intergenic not near genes chr3R_10_31085001 chr3R_31085001 RAL-461 2174 chr3R 31100023 31100062 chr3R 31100141 31100179 8 116 3.0 2.0 2.5 2.3 156 chr3R 31100023 exon CG15553 - chr3R 31100101 exon CG15553 - chr3R 31100179 exon CG15553 - chr3R_8_31100001 chr3R_31100001 RAL-461 2175 chr3R 31147484 31147489 chr3R 31148517 31148542 6 1040 8.0 20.0 14.0 0.4 1058 chr3R 31147484 intron Gycbeta100B + chr3R 31148013 intron Gycbeta100B + chr3R 31148542 intron Gycbeta100B + chr3R_6_31145001 chr3R_31145001 RAL-461 2176 chr3R 31413077 31413120 chr3R 31418290 31418326 copia 7 5205 0.0 1.5 0.8 3.9 5249 chr3R 31413077 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418326 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-461 2177 chr3R 31426869 31426907 chr3R 31426981 31427019 6 101 5.0 5.5 5.2 1.0 150 chr3R 31426869 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427019 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-461 2178 chr3R 31429657 31429700 chr3R 31429788 31429810 5 123 1.5 1.5 1.5 2.0 153 chr3R 31429657 intron Gprk2 + chr3R 31429734 intron Gprk2 + chr3R 31429810 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-461 2179 chr3R 31435343 31435379 chr3R 31435515 31435551 8 171 7.5 7.5 7.5 0.9 208 chr3R 31435343 intron Gprk2 + chr3R 31435447 intron Gprk2 + chr3R 31435551 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-461 2180 chr3R 31453201 31453249 chr3R 31453299 31453326 7 91 6.0 3.0 4.5 1.3 125 chr3R 31453201 intron Gprk2 + chr3R 31453264 intron Gprk2 + chr3R 31453326 exon Gprk2 + chr3R_7_31450001 chr3R_31450001 RAL-461 2181 chr3R 31516959 31516976 chr3R 31517121 31517130 6 160 6.5 5.0 5.8 0.9 171 chr3R 31516959 intergenic not near genes chr3R 31517044 intergenic not near genes chr3R 31517130 intergenic not near genes chr3R_6_31515001 chr3R_31515001 RAL-461 2182 chr3R 31538476 31538509 chr3R 31538574 31538607 10 94 3.5 8.0 5.8 1.5 131 chr3R 31538476 intergenic not near genes chr3R 31538542 intergenic not near genes chr3R 31538607 intergenic not near genes chr3R_10_31535001 chr3R_31535001 RAL-461 2183 chr3R 31610095 31610148 chr3R 31610201 31610244 13 104 4.5 2.5 3.5 2.9 149 chr3R 31610095 intron CycG - chr3R 31610170 intron CycG - chr3R 31610244 intron CycG - chr3R_13_31610001 chr3R_31610001 RAL-461 2184 chr3R 31670586 31670636 chr3R 31670700 31670750 16 112 3.5 3.0 3.2 3.8 164 chr3R 31670586 intron CG1815 + chr3R 31670668 intron CG1815 + chr3R 31670750 intron CG1815 + chr3R_16_31670001 chr3R_31670001 RAL-461 2185 chr3R 31691527 31691555 chr3R 31696296 31696319 Doc 8 4774 4.5 3.0 3.8 1.7 4792 chr3R 31691527 intergenic not near genes chr3R 31693923 intergenic not near genes chr3R 31696319 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-461 2186 chr3R 31829178 31829217 chr3R 31829276 31829315 7 96 1.5 2.5 2.0 2.3 137 chr3R 31829178 intron RhoGAP100F + chr3R 31829246 intron RhoGAP100F + chr3R 31829315 intron RhoGAP100F + chr3R_7_31825001 chr3R_31825001 RAL-461 2187 chr3R 31831519 31831567 chr3R 31831618 31831656 17 92 5.5 6.5 6.0 2.4 137 chr3R 31831519 intron RhoGAP100F + chr3R 31831588 intron RhoGAP100F + chr3R 31831656 intron RhoGAP100F + chr3R_17_31830001 chr3R_31830001 RAL-461 2188 chr3R 31862421 31862467 chr3R 31862525 31862571 7 98 5.0 2.5 3.8 1.5 150 chr3R 31862421 intron heph - chr3R 31862496 intron heph - chr3R 31862571 intron heph - chr3R_7_31860001 chr3R_31860001 RAL-461 2189 chr3R 31878611 31878642 chr3R 31878689 31878712 13 84 2.0 2.5 2.2 4.1 101 chr3R 31878611 intron heph - chr3R 31878662 intron heph - chr3R 31878712 intron heph - chr3R_13_31875001 chr3R_31875001 RAL-461 2190 chr3R 31905775 31905807 chr3R 31905878 31905903 4 100 1.0 4.0 2.5 1.1 128 chr3R 31905775 intron heph - chr3R 31905839 intron heph - chr3R 31905903 intron heph - chr3R_4_31905001 chr3R_31905001 RAL-461 2191 chr3R 31911668 31911713 chr3R 31911764 31911798 8 96 3.0 2.0 2.5 2.3 130 chr3R 31911668 intron heph - chr3R 31911733 intron heph - chr3R 31911798 intron heph - chr3R_8_31910001 chr3R_31910001 RAL-461 2192 chr3R 31930565 31930589 chr3R 31930641 31930685 10 92 2.5 3.0 2.8 2.6 120 chr3R 31930565 intron heph - chr3R 31930625 intron heph - chr3R 31930685 intron heph - chr3R_10_31930001 chr3R_31930001 RAL-461 2193 chr3R 31931180 31931216 chr3R 31931283 31931319 14 101 6.0 4.0 5.0 2.3 139 chr3R 31931180 intron heph - chr3R 31931250 intron heph - chr3R 31931319 intron heph - chr3R_14_31930001 chr3R_31930001 RAL-461 2194 chr3R 31957958 31958009 chr3R 31958060 31958111 6 101 1.0 2.5 1.8 2.1 153 chr3R 31957958 intron heph - chr3R 31958034 intron heph - chr3R 31958111 intron heph - chr3R_6_31955001 chr3R_31955001 RAL-461 2195 chr3R 31997972 31998012 chr3R 32005462 32005495 blood 8 7488 5.5 3.0 4.2 1.5 7523 chr3R 31997972 intron heph - chr3R 32001734 intron heph - chr3R 32005495 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-461 2196 chr3R 32016718 32016740 chr3R 32016796 32016800 5 85 2.5 7.0 4.8 0.9 82 chr3R 32016718 5` UTR CR45557 + chr3R 32016759 5` UTR CR45557 + chr3R 32016800 5` UTR CR45557 + chr3R_5_32015001 chr3R_32015001 RAL-461 2197 chr3R 32034252 32034288 chr3R 32034355 32034383 5 98 4.5 7.5 6.0 0.7 131 chr3R 32034252 intergenic not near genes chr3R 32034318 intergenic not near genes chr3R 32034383 intergenic not near genes chr3R_5_32030001 chr3R_32030001 RAL-461 2198 chr3R 32061688 32061723 chr3R 32062022 32062055 13 327 28.5 33.5 31.0 0.4 367 chr3R 32061688 intron Map205 - chr3R 32061872 intron Map205 - chr3R 32062055 intron Map205 - chr3R_13_32060001 chr3R_32060001 RAL-461 2199 chr4 73439 73453 chr4 73564 73568 5 123 2.0 10.5 6.2 0.7 129 chr4 73439 intron pan + chr4 73504 intron pan + chr4 73568 intron pan + chr4_5_70001 chr4_70001 RAL-461 2200 chr4 76477 76518 chr4 81940 81960 I-element 9 5461 2.0 2.5 2.2 2.8 5483 chr4 76477 intron pan + chr4 79218 intron pan + chr4 81960 intron pan + chr4_9_75001 chr4_75001 RAL-461 2201 chr4 97441 97487 chr4 97598 97644 13 153 4.5 7.0 5.8 1.9 203 chr4 97441 intron pan + chr4 97542 intron pan + chr4 97644 intron pan + chr4_13_95001 chr4_95001 RAL-461 2202 chr4 257398 257436 chr4 257571 257626 11 185 2.5 2.0 2.2 3.4 228 chr4 257398 exon RhoGAP102A + chr4 257512 intron RhoGAP102A + chr4 257626 intron RhoGAP102A + chr4_11_255001 chr4_255001 RAL-461 2203 chr4 280783 280830 chr4 281433 281455 5 645 4.0 3.5 3.8 1.0 672 chr4 280783 intron Syt7 - chr4 281119 intron Syt7 - chr4 281455 intron Syt7 - chr4_5_280001 chr4_280001 RAL-461 2204 chr4 293852 293898 chr4 294117 294163 7 264 3.0 2.5 2.8 1.8 311 chr4 293852 intron Syt7 - chr4 294008 intron Syt7 - chr4 294163 intron Syt7 - chr4_7_290001 chr4_290001 RAL-461 2205 chr4 314493 314533 chr4 314591 314600 8 90 1.5 4.0 2.8 2.1 107 chr4 314493 intergenic Zip102B -,CG32850 + chr4 314546 intergenic CG32850 +,Zip102B - chr4 314600 intergenic CG32850 + chr4_8_310001 chr4_310001 RAL-461 2206 chr4 319970 320019 chr4 328166 328215 Stalker2 13 8191 6.5 5.0 5.8 1.9 8245 chr4 319970 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328215 3` UTR,3` UTR CG32850 +,PMCA - chr4_13_320001 chr4_320001 RAL-461 2207 chr4 418215 418266 chr4 418329 418380 16 106 8.0 2.5 5.2 2.6 165 chr4 418215 intergenic not near genes chr4 418298 intergenic not near genes chr4 418380 intergenic not near genes chr4_16_415001 chr4_415001 RAL-461 2208 chr4 617502 617553 chr4 617630 617665 19 120 2.0 3.5 2.8 5.0 163 chr4 617502 intron Eph + chr4 617584 intron Eph + chr4 617665 intron Eph + chr4_19_615001 chr4_615001 RAL-461 2209 chr4 654349 654397 chr4 654452 654500 15 102 6.0 5.0 5.5 2.3 151 chr4 654349 intron gw - chr4 654424 intron gw - chr4 654500 intron gw - chr4_15_650001 chr4_650001 RAL-461 2210 chr4 671593 671636 chr4 680189 680239 Tirant 12 8597 5.5 6.0 5.8 1.8 8646 chr4 671593 intron CG11360 + chr4 675916 intron CG11360 + chr4 680239 intron CG11360 + chr4_12_675001 chr4_675001 RAL-461 2211 chr4 896767 896816 chr4 896864 896895 8 95 1.5 2.5 2.0 2.7 128 chr4 896767 intron unc-13 - chr4 896831 intron unc-13 - chr4 896895 intron unc-13 - chr4_8_895001 chr4_895001 RAL-461 2212 chr4 905546 905587 chr4 905646 905689 15 99 6.5 7.5 7.0 1.9 143 chr4 905546 5` UTR unc-13 - chr4 905618 5` UTR unc-13 - chr4 905689 5` UTR unc-13 - chr4_15_905001 chr4_905001 RAL-461 2213 chr4 1231210 1231255 chr4 1231362 1231362 19 147 4.0 3.5 3.8 4.0 152 chr4 1231210 intron Caps + chr4 1231286 intron Caps + chr4 1231362 intron Caps + chr4_19_1230001 chr4_1230001 RAL-461 2214 chr4 1250547 1250583 chr4 1250653 1250689 9 104 1.0 2.0 1.5 3.6 142 chr4 1250547 intron Caps + chr4 1250618 intron Caps + chr4 1250689 intron Caps + chr4_9_1250001 chr4_1250001 RAL-461 2215 chrX 295836 295882 chrX 303476 303522 412 11 7636 2.0 4.0 3.0 2.8 7686 chrX 295836 intron CG3777 + chrX 299679 intron CG3777 + chrX 303522 intron CG3777 + chrX_11_295001 chrX_295001 RAL-461 2216 chrX 318458 318473 chrX 323564 323579 flea 6 5106 8.0 3.5 5.8 0.9 5121 chrX 318458 intron,intron CG3777 +,CG32816 - chrX 321018 intron,intron CG3777 +,CG32816 - chrX 323579 intron,intron CG3777 +,CG32816 - chrX_6_320001 chrX_320001 RAL-461 2217 chrX 318480 318499 chrX 323586 323590 flea 8 5104 4.5 5.5 5.0 1.3 5110 chrX 318480 intron,intron CG3777 +,CG32816 - chrX 321035 intron,intron CG3777 +,CG32816 - chrX 323590 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-461 2218 chrX 428408 428452 chrX 434611 434657 3S18 11 6200 6.0 4.5 5.2 1.8 6249 chrX 428408 intron CG32816 - chrX 431532 intron CG32816 - chrX 434657 intron CG32816 - chrX_11_430001 chrX_430001 RAL-461 2219 chrX 611115 611167 chrX 611225 611277 18 107 2.0 2.5 2.2 5.6 162 chrX 611115 intron CG13366 - chrX 611196 intron CG13366 - chrX 611277 intron CG13366 - chrX_18_610001 chrX_610001 RAL-461 2220 chrX 667632 667682 chrX 667735 667786 8 103 2.0 3.0 2.5 2.3 154 chrX 667632 intergenic not near genes chrX 667709 intergenic not near genes chrX 667786 intergenic not near genes chrX_8_665001 chrX_665001 RAL-461 2221 chrX 680823 680867 chrX 680925 680962 4 99 0.5 2.5 1.5 1.6 139 chrX 680823 intergenic not near genes chrX 680892 intergenic not near genes chrX 680962 intergenic not near genes chrX_4_680001 chrX_680001 RAL-461 2222 chrX 695291 695322 chrX 695372 695414 4 84 3.5 6.0 4.8 0.7 123 chrX 695291 intron sdk + chrX 695352 intron sdk + chrX 695414 intron sdk + chrX_4_695001 chrX_695001 RAL-461 2223 chrX 778107 778160 chrX 778216 778245 11 102 2.0 0.0 1.0 5.5 138 chrX 778107 intron fz3 + chrX 778176 intron fz3 + chrX 778245 intron fz3 + chrX_11_775001 chrX_775001 RAL-461 2224 chrX 812258 812268 chrX 817898 817917 297 4 5647 4.0 2.5 3.2 1.0 5659 chrX 812258 intron CG43867 - chrX 815088 intron CG43867 - chrX 817917 intron CG43867 - chrX_4_815001 chrX_815001 RAL-461 2225 chrX 812283 812294 chrX 817896 817943 297 5 5635 2.0 2.5 2.2 1.6 5660 chrX 812283 intron CG43867 - chrX 815113 intron CG43867 - chrX 817943 intron CG43867 - chrX_5_815001 chrX_815001 RAL-461 2226 chrX 827588 827624 chrX 835396 835399 roo 5 7808 6.5 0.0 3.2 1.2 7811 chrX 827588 intron CG43867 - chrX 831494 intron CG43867 - chrX 835399 intron CG43867 - chrX_5_830001 chrX_830001 RAL-461 2227 chrX 906690 906714 chrX 908499 908523 S-element 6 1809 4.5 3.5 4.0 1.2 1833 chrX 906690 intron CG43867 - chrX 907606 intron CG43867 - chrX 908523 intron CG43867 - chrX_6_905001 chrX_905001 RAL-461 2228 chrX 912028 912053 chrX 912118 912138 4 87 2.5 2.0 2.2 1.2 110 chrX 912028 intron CG43867 - chrX 912083 intron CG43867 - chrX 912138 intron CG43867 - chrX_4_910001 chrX_910001 RAL-461 2229 chrX 1315951 1315960 chrX 1316029 1316045 4 85 3.0 2.5 2.8 1.1 94 chrX 1315951 intron DAAM - chrX 1315998 intron DAAM - chrX 1316045 intron DAAM - chrX_4_1315001 chrX_1315001 RAL-461 2230 chrX 1357794 1357813 chrX 1367954 1367954 Doc 7 10165 4.0 3.5 3.8 1.5 10160 chrX 1357794 intergenic png - chrX 1362874 intergenic not near genes chrX 1367954 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-461 2231 chrX 1930532 1930560 chrX 1938115 1938126 opus 4 7582 5.0 7.5 6.2 0.6 7594 chrX 1930532 intergenic CG11596 + chrX 1934329 intergenic not near genes chrX 1938126 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-461 2232 chrX 2385714 2385765 chrX 2385813 2385864 7 99 1.0 3.5 2.2 2.2 150 chrX 2385714 exon PsGEF - chrX 2385789 intron PsGEF - chrX 2385864 intron PsGEF - chrX_7_2385001 chrX_2385001 RAL-461 2233 chrX 2429652 2429668 chrX 2429753 2429769 6 101 0.0 4.0 2.0 2.0 117 chrX 2429652 intergenic not near genes chrX 2429710 intergenic not near genes chrX 2429769 intergenic not near genes chrX_6_2425001 chrX_2425001 RAL-461 2234 chrX 2559362 2559378 chrX 2559470 2559484 5 108 5.0 10.0 7.5 0.6 122 chrX 2559362 intron Pdfr + chrX 2559423 intron Pdfr + chrX 2559484 intron Pdfr + chrX_5_2555001 chrX_2555001 RAL-461 2235 chrX 2578802 2578844 chrX 2578921 2578948 7 117 2.5 3.5 3.0 1.8 146 chrX 2578802 intergenic Pdfr +,Vha36-3 - chrX 2578875 intergenic Vha36-3 -,Pdfr + chrX 2578948 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-461 2236 chrX 2684341 2684377 chrX 2684504 2684540 7 161 3.0 4.0 3.5 1.6 199 chrX 2684341 intergenic CR44470 - chrX 2684440 intergenic not near genes chrX 2684540 intergenic not near genes chrX_7_2680001 chrX_2680001 RAL-461 2237 chrX 2844897 2844930 chrX 2852327 2852340 mdg1 9 7422 2.5 3.0 2.8 2.4 7443 chrX 2844897 intron kirre + chrX 2848618 intron kirre + chrX 2852340 intron kirre + chrX_9_2845001 chrX_2845001 RAL-461 2238 chrX 2888103 2888129 chrX 2888201 2888227 5 96 3.5 2.0 2.8 1.3 124 chrX 2888103 intron kirre + chrX 2888165 intron kirre + chrX 2888227 intron kirre + chrX_5_2885001 chrX_2885001 RAL-461 2239 chrX 2917081 2917123 chrX 2917181 2917223 8 98 2.5 3.5 3.0 2.0 142 chrX 2917081 intron kirre + chrX 2917152 intron kirre + chrX 2917223 intron kirre + chrX_8_2915001 chrX_2915001 RAL-461 2240 chrX 3075622 3075664 chrX 3080948 3080990 Transpac 9 5324 4.5 4.5 4.5 1.6 5368 chrX 3075622 intron kirre + chrX 3078306 intron kirre + chrX 3080990 intron kirre + chrX_9_3075001 chrX_3075001 RAL-461 2241 chrX 3203446 3203489 chrX 3203665 3203672 7 212 1.0 3.5 2.2 2.2 226 chrX 3203446 intron dnc + chrX 3203559 intron dnc + chrX 3203672 intron dnc + chrX_7_3200001 chrX_3200001 RAL-461 2242 chrX 3218491 3218538 chrX 3227660 3227703 roo 5 9167 1.5 1.5 1.5 2.0 9212 chrX 3218491 intron dnc + chrX 3223097 intron dnc + chrX 3227703 intron dnc + chrX_5_3220001 chrX_3220001 RAL-461 2243 chrX 3243614 3243657 chrX 3243724 3243767 11 108 4.0 5.5 4.8 1.9 153 chrX 3243614 intron dnc + chrX 3243690 intron dnc + chrX 3243767 intron dnc + chrX_11_3240001 chrX_3240001 RAL-461 2244 chrX 3268340 3268367 chrX 3268864 3268891 5 523 3.0 6.5 4.8 0.9 551 chrX 3268340 intron dnc + chrX 3268616 intron dnc + chrX 3268891 intron dnc + chrX_5_3265001 chrX_3265001 RAL-461 2245 chrX 3306325 3306368 chrX 3306427 3306470 6 100 2.5 1.0 1.8 2.1 145 chrX 3306325 intron dnc + chrX 3306398 intron dnc + chrX 3306470 intron dnc + chrX_6_3305001 chrX_3305001 RAL-461 2246 chrX 3493074 3493125 chrX 3502253 3502274 roo 4 9166 3.0 2.5 2.8 1.1 9200 chrX 3493074 intron,intron CR44999 +,Gas8 - chrX 3497674 intron,intron CR44999 +,Gas8 - chrX 3502274 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-461 2247 chrX 3537407 3537414 chrX 3537504 3537510 4 97 2.5 3.5 3.0 1.0 103 chrX 3537407 intron CG32791 - chrX 3537458 intron CG32791 - chrX 3537510 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-461 2248 chrX 3597544 3597575 chrX 3619717 3619721 roo 9 22176 6.0 2.0 4.0 1.8 22177 chrX 3597544 intron AstA-R1 + chrX 3608632 intron AstA-R1 + chrX 3619721 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-461 2249 chrX 3630540 3630571 chrX 3630625 3630665 5 85 1.0 0.0 0.5 3.3 125 chrX 3630540 intron AstA-R1 + chrX 3630602 intron AstA-R1 + chrX 3630665 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-461 2250 chrX 3726756 3726771 chrX 3730173 3730188 NOF 4 3417 2.5 0.5 1.5 1.6 3432 chrX 3726756 intron tlk + chrX 3728472 intron tlk + chrX 3730188 intron tlk + chrX_4_3725001 chrX_3725001 RAL-461 2251 chrX 3842311 3842353 chrX 3842567 3842614 pogo 8 256 3.5 4.0 3.8 1.7 303 chrX 3842311 intron ec + chrX 3842462 intron ec + chrX 3842614 intron ec + chrX_8_3840001 chrX_3840001 RAL-461 2252 chrX 3862803 3862845 chrX 3862907 3862949 7 104 3.0 3.5 3.2 1.7 146 chrX 3862803 intergenic yin - chrX 3862876 intergenic yin - chrX 3862949 intergenic yin - chrX_7_3860001 chrX_3860001 RAL-461 2253 chrX 3878474 3878484 chrX 3878810 3878820 4 336 1.5 5.5 3.5 0.9 346 chrX 3878474 exon CG2930 + chrX 3878647 3` UTR CG2930 + chrX 3878820 intergenic CG2930 + chrX_4_3875001 chrX_3875001 RAL-461 2254 chrX 3986845 3986879 chrX 3994498 3994522 412 12 7645 2.5 0.5 1.5 4.8 7677 chrX 3986845 intergenic not near genes chrX 3990684 intergenic not near genes chrX 3994522 intergenic not near genes chrX_12_3990001 chrX_3990001 RAL-461 2255 chrX 4157881 4157918 chrX 4164954 4164982 297 7 7071 1.5 3.5 2.5 2.0 7101 chrX 4157881 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164982 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-461 2256 chrX 4247657 4247700 chrX 4247772 4247815 8 114 2.5 3.0 2.8 2.1 158 chrX 4247657 3` UTR CG43134 + chrX 4247736 3` UTR CG43134 + chrX 4247815 intergenic CG43134 + chrX_8_4245001 chrX_4245001 RAL-461 2257 chrX 4252928 4252970 chrX 4253036 4253063 8 103 6.0 2.0 4.0 1.6 135 chrX 4252928 intergenic CG15576 - chrX 4252996 intergenic CG15576 - chrX 4253063 intergenic CG15576 - chrX_8_4250001 chrX_4250001 RAL-461 2258 chrX 4299503 4299534 chrX 4299989 4300020 5 480 0.0 4.5 2.2 1.6 517 chrX 4299503 intergenic not near genes chrX 4299762 intergenic CG12692 - chrX 4300020 intergenic CG12692 - chrX_5_4295001 chrX_4295001 RAL-461 2259 chrX 4343866 4343896 chrX 4344000 4344030 4 129 1.0 3.0 2.0 1.3 164 chrX 4343866 intron norpA + chrX 4343948 intron norpA + chrX 4344030 intron norpA + chrX_4_4340001 chrX_4340001 RAL-461 2260 chrX 4660822 4660835 chrX 4660919 4660928 4 107 3.5 0.0 1.8 1.4 106 chrX 4660822 intron CG3009 - chrX 4660875 intron CG3009 - chrX 4660928 intron CG3009 - chrX_4_4660001 chrX_4660001 RAL-461 2261 chrX 4700371 4700417 chrX 4700734 4700780 jockey 19 360 4.0 4.5 4.2 3.7 409 chrX 4700371 3` UTR ctp + chrX 4700576 3` UTR ctp + chrX 4700780 3` UTR ctp + chrX_19_4700001 chrX_4700001 RAL-461 2262 chrX 4717342 4717376 chrX 4717876 4717905 4 534 1.5 1.5 1.5 1.6 563 chrX 4717342 intron Proc-R + chrX 4717624 intron Proc-R + chrX 4717905 intron Proc-R + chrX_4_4715001 chrX_4715001 RAL-461 2263 chrX 4744151 4744164 chrX 4744269 4744282 5 118 6.0 0.5 3.2 1.2 131 chrX 4744151 intergenic not near genes chrX 4744216 intergenic not near genes chrX 4744282 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-461 2264 chrX 4763245 4763285 chrX 4763747 4763773 Stalker4 7 500 3.0 3.5 3.2 1.7 528 chrX 4763245 intergenic not near genes chrX 4763509 intergenic not near genes chrX 4763773 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-461 2265 chrX 4827973 4827989 chrX 4835344 4835354 Stalker4 5 7375 2.0 2.0 2.0 1.7 7381 chrX 4827973 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835354 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-461 2266 chrX 4827990 4827997 chrX 4835343 4835357 Stalker4 4 7368 2.0 1.5 1.8 1.4 7367 chrX 4827990 intergenic not near genes chrX 4831674 intergenic not near genes chrX 4835357 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-461 2267 chrX 4897510 4897528 chrX 4897594 4897600 7 90 3.5 2.0 2.8 1.8 90 chrX 4897510 intron CG42594 + chrX 4897555 intron CG42594 + chrX 4897600 intron CG42594 + chrX_7_4895001 chrX_4895001 RAL-461 2268 chrX 4990021 4990072 chrX 4997255 4997301 roo 13 7234 3.0 1.5 2.2 4.1 7280 chrX 4990021 intron CR44833 - chrX 4993661 intron CR44833 - chrX 4997301 intron CR44833 - chrX_13_4990001 chrX_4990001 RAL-461 2269 chrX 5096275 5096305 chrX 5103840 5103869 springer 5 7576 0.0 1.5 0.8 2.8 7594 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-461 2270 chrX 5134799 5134827 chrX 5134900 5134948 9 115 2.5 2.0 2.2 2.8 149 chrX 5134799 intron,intron CG15465 +,rg + chrX 5134874 intron,intron CG15465 +,rg + chrX 5134948 intron,intron CG15465 +,rg + chrX_9_5130001 chrX_5130001 RAL-461 2271 chrX 5202192 5202242 chrX 5202316 5202366 7 117 1.0 0.5 0.8 3.9 174 chrX 5202192 intron,intron CG15465 +,rg + chrX 5202279 intron,intron CG15465 +,rg + chrX 5202366 intron,intron CG15465 +,rg + chrX_7_5200001 chrX_5200001 RAL-461 2272 chrX 5323057 5323166 chrX 5323337 5323420 5 282 0.0 0.0 0.0 5.0 363 chrX 5323057 intergenic Rnp4F - chrX 5323238 intergenic not near genes chrX 5323420 intergenic Mcm3 + chrX_5_5320001 chrX_5320001 RAL-461 2273 chrX 5349257 5349308 chrX 5349354 5349405 23 97 3.0 5.5 4.2 4.4 148 chrX 5349257 intron SK + chrX 5349331 intron SK + chrX 5349405 intron SK + chrX_23_5345001 chrX_5345001 RAL-461 2274 chrX 5368621 5368648 chrX 5368910 5368934 4 289 1.0 2.5 1.8 1.4 313 chrX 5368621 intron SK + chrX 5368778 intron SK + chrX 5368934 intron SK + chrX_4_5365001 chrX_5365001 RAL-461 2275 chrX 5524827 5524859 chrX 5528706 5528741 412 5 3881 4.5 1.0 2.8 1.3 3914 chrX 5524827 intergenic snoRNA:Psi28S-3342 - chrX 5526784 intergenic not near genes chrX 5528741 intergenic Vsx2 - chrX_5_5525001 chrX_5525001 RAL-461 2276 chrX 5539116 5539157 chrX 5539201 5539218 4 77 3.0 3.0 3.0 1.0 102 chrX 5539116 intron Vsx2 - chrX 5539167 intron Vsx2 - chrX 5539218 intron Vsx2 - chrX_4_5535001 chrX_5535001 RAL-461 2277 chrX 5725014 5725034 chrX 5725133 5725149 4 120 5.0 0.5 2.8 1.1 135 chrX 5725014 intron CG32758 - chrX 5725082 intron CG32758 - chrX 5725149 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-461 2278 chrX 5798867 5798886 chrX 5799034 5799066 4 178 1.0 2.5 1.8 1.4 199 chrX 5798867 intergenic not near genes chrX 5798966 intergenic not near genes chrX 5799066 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-461 2279 chrX 5884150 5884186 chrX 5884401 5884442 pogo 9 256 3.5 4.0 3.8 1.9 292 chrX 5884150 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884442 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-461 2280 chrX 6003294 6003305 chrX 6003370 6003400 6 93 3.0 4.0 3.5 1.3 106 chrX 6003294 intron CR44498 + chrX 6003347 intron CR44498 + chrX 6003400 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-461 2281 chrX 6013559 6013591 chrX 6013747 6013769 4 185 21.0 23.0 22.0 0.2 210 chrX 6013559 intergenic CR44499 +,mab-21 - chrX 6013664 intergenic CR44499 +,mab-21 - chrX 6013769 5` UTR CR44499 + chrX_4_6010001 chrX_6010001 RAL-461 2282 chrX 6118693 6118723 chrX 6118789 6118825 6 101 4.0 4.0 4.0 1.2 132 chrX 6118693 intron Ca-alpha1T - chrX 6118759 intron Ca-alpha1T - chrX 6118825 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-461 2283 chrX 6171566 6171614 chrX 6179019 6179057 Quasimodo 7 7446 2.0 3.5 2.8 1.8 7491 chrX 6171566 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179057 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-461 2284 chrX 6388676 6388695 chrX 6388752 6388791 9 90 2.0 4.0 3.0 2.2 115 chrX 6388676 intergenic not near genes chrX 6388734 intergenic not near genes chrX 6388791 intergenic not near genes chrX_9_6385001 chrX_6385001 RAL-461 2285 chrX 6562814 6562828 chrX 6571300 6571330 Tirant 6 8497 6.0 2.0 4.0 1.2 8516 chrX 6562814 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571330 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-461 2286 chrX 6629770 6629789 chrX 6629877 6629896 6 107 4.0 3.0 3.5 1.3 126 chrX 6629770 intron pigs + chrX 6629833 intron pigs + chrX 6629896 intron pigs + chrX_6_6625001 chrX_6625001 RAL-461 2287 chrX 6737503 6737546 chrX 6737603 6737648 4 92 2.5 3.5 3.0 1.0 145 chrX 6737503 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737648 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-461 2288 chrX 6897594 6897700 chrX 6897665 6897797 7 117 2.0 2.0 2.0 2.3 203 chrX 6897594 intergenic not near genes chrX 6897696 intergenic not near genes chrX 6897797 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-461 2289 chrX 6984605 6984620 chrX 6984702 6984717 4 97 7.0 4.0 5.5 0.6 112 chrX 6984605 intron ogre - chrX 6984661 intron ogre - chrX 6984717 intron ogre - chrX_4_6980001 chrX_6980001 RAL-461 2290 chrX 6984622 6984653 chrX 6984701 6984747 7 94 4.0 3.5 3.8 1.5 125 chrX 6984622 intron ogre - chrX 6984684 intron ogre - chrX 6984747 intron ogre - chrX_7_6980001 chrX_6980001 RAL-461 2291 chrX 7023607 7023628 chrX 7030991 7031038 Tabor 4 7404 6.0 2.5 4.2 0.8 7431 chrX 7023607 intron CG12541 - chrX 7027322 intron CG12541 - chrX 7031038 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-461 2292 chrX 7125238 7125272 chrX 7134417 7134451 roo 9 9176 1.0 4.5 2.8 2.4 9213 chrX 7125238 intergenic not near genes chrX 7129844 intergenic not near genes chrX 7134451 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-461 2293 chrX 7345205 7345214 chrX 7345291 7345305 4 96 1.5 2.0 1.8 1.4 100 chrX 7345205 intron,intron CR44357 -,CG1677 - chrX 7345255 intron,intron CR44357 -,CG1677 - chrX 7345305 intron,intron CR44357 -,CG1677 - chrX_4_7345001 chrX_7345001 RAL-461 2294 chrX 7413116 7413143 chrX 7413521 7413538 9 415 0.5 5.5 3.0 2.2 422 chrX 7413116 exon CG42704 + chrX 7413327 intergenic CG42704 + chrX 7413538 intergenic CG42704 +,CG42705 + chrX_9_7410001 chrX_7410001 RAL-461 2295 chrX 7522263 7522310 chrX 7522366 7522399 11 102 6.0 2.0 4.0 2.2 136 chrX 7522263 intron CG32719 - chrX 7522331 intron CG32719 - chrX 7522399 intron CG32719 - chrX_11_7520001 chrX_7520001 RAL-461 2296 chrX 7567033 7567050 chrX 7567101 7567138 4 84 4.5 1.5 3.0 1.0 105 chrX 7567033 intergenic not near genes chrX 7567086 intergenic not near genes chrX 7567138 intergenic not near genes chrX_4_7565001 chrX_7565001 RAL-461 2297 chrX 7570623 7570662 chrX 7570770 7570816 12 150 2.0 1.0 1.5 4.8 193 chrX 7570623 intergenic not near genes chrX 7570720 intergenic not near genes chrX 7570816 intergenic not near genes chrX_12_7570001 chrX_7570001 RAL-461 2298 chrX 7702885 7702929 chrX 7703344 7703366 jockey 11 450 6.0 4.5 5.2 1.8 481 chrX 7702885 intron CHES-1-like - chrX 7703126 intron CHES-1-like - chrX 7703366 intron CHES-1-like - chrX_11_7700001 chrX_7700001 RAL-461 2299 chrX 7931593 7931607 chrX 7931682 7931712 5 102 6.0 4.0 5.0 0.8 119 chrX 7931593 intergenic CG10778 -,CG10777 - chrX 7931652 intergenic CG10778 -,CG10777 - chrX 7931712 intergenic CG10778 -,CG10777 - chrX_5_7930001 chrX_7930001 RAL-461 2300 chrX 8031429 8031451 chrX 8035733 8035780 Juan 7 4323 15.5 5.5 10.5 0.6 4351 chrX 8031429 intergenic not near genes chrX 8033604 intergenic not near genes chrX 8035780 3` UTR CG2233 - chrX_7_8030001 chrX_8030001 RAL-461 2301 chrX 8066567 8066600 chrX 8066659 8066709 9 106 0.5 0.0 0.2 7.5 142 chrX 8066567 intron mys + chrX 8066638 intron mys + chrX 8066709 intron mys + chrX_9_8065001 chrX_8065001 RAL-461 2302 chrX 8085554 8085598 chrX 8085660 8085704 11 103 4.5 3.5 4.0 2.2 150 chrX 8085554 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085704 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-461 2303 chrX 8092280 8092313 chrX 8092379 8092418 9 103 2.0 4.0 3.0 2.2 138 chrX 8092280 intron Ubc-E2H - chrX 8092349 intron Ubc-E2H - chrX 8092418 intron Ubc-E2H - chrX_9_8090001 chrX_8090001 RAL-461 2304 chrX 8500919 8500940 chrX 8501098 8501124 13 181 5.5 0.0 2.8 3.4 205 chrX 8500919 intron CG33181 + chrX 8501022 intron CG33181 + chrX 8501124 intron CG33181 + chrX_13_8500001 chrX_8500001 RAL-461 2305 chrX 8509108 8509151 chrX 8509205 8509242 6 96 2.5 3.5 3.0 1.5 134 chrX 8509108 intron CG33181 + chrX 8509175 intron CG33181 + chrX 8509242 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-461 2306 chrX 8511545 8511574 chrX 8511674 8511693 10 127 7.0 5.0 6.0 1.4 148 chrX 8511545 intron CG33181 + chrX 8511619 intron CG33181 + chrX 8511693 intron CG33181 + chrX_10_8510001 chrX_8510001 RAL-461 2307 chrX 8536743 8536775 chrX 8536839 8536865 14 93 4.5 3.0 3.8 2.9 122 chrX 8536743 intron Nrg + chrX 8536804 intron Nrg + chrX 8536865 intron Nrg + chrX_14_8535001 chrX_8535001 RAL-461 2308 chrX 8730449 8730457 chrX 8730545 8730552 5 96 0.0 9.0 4.5 0.9 103 chrX 8730449 intergenic not near genes chrX 8730500 intergenic not near genes chrX 8730552 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-461 2309 chrX 8772227 8772244 chrX 8772326 8772343 4 99 4.0 1.5 2.8 1.1 116 chrX 8772227 intron Lim1 - chrX 8772285 intron Lim1 - chrX 8772343 intron Lim1 - chrX_4_8770001 chrX_8770001 RAL-461 2310 chrX 8894988 8895002 chrX 8895094 8895108 7 106 4.5 4.0 4.2 1.3 120 chrX 8894988 intron Moe - chrX 8895048 intron Moe - chrX 8895108 intron Moe - chrX_7_8895001 chrX_8895001 RAL-461 2311 chrX 8918421 8918426 chrX 8918518 8918523 4 97 9.0 10.0 9.5 0.4 102 chrX 8918421 intron rdgA + chrX 8918472 intron rdgA + chrX 8918523 intron rdgA + chrX_4_8915001 chrX_8915001 RAL-461 2312 chrX 8922340 8922361 chrX 8922768 8922815 jockey 9 440 2.0 4.0 3.0 2.2 475 chrX 8922340 intron rdgA + chrX 8922578 intron rdgA + chrX 8922815 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-461 2313 chrX 8948736 8948789 chrX 8956266 8956316 roo 8 7528 1.0 3.5 2.2 2.5 7580 chrX 8948736 intron rdgA + chrX 8952526 intron rdgA + chrX 8956316 intron rdgA + chrX_8_8950001 chrX_8950001 RAL-461 2314 chrX 8969080 8969134 chrX 8969415 8969456 13 333 2.5 3.0 2.8 3.4 376 chrX 8969080 intron rdgA + chrX 8969268 intron rdgA + chrX 8969456 intron rdgA + chrX_13_8965001 chrX_8965001 RAL-461 2315 chrX 9152057 9152100 chrX 9152160 9152170 7 98 3.5 1.0 2.2 2.2 113 chrX 9152057 intergenic dalao +,His3.3B - chrX 9152114 intergenic dalao +,His3.3B - chrX 9152170 intergenic dalao +,His3.3B - chrX_7_9150001 chrX_9150001 RAL-461 2316 chrX 9218059 9218086 chrX 9218170 9218187 8 110 2.5 0.0 1.2 3.6 128 chrX 9218059 3` UTR t - chrX 9218123 3` UTR t - chrX 9218187 3` UTR t - chrX_8_9215001 chrX_9215001 RAL-461 2317 chrX 9273002 9273044 chrX 9273103 9273145 10 100 1.5 4.0 2.8 2.6 143 chrX 9273002 intergenic Cfp1 -,CG16892 + chrX 9273074 intergenic Cfp1 -,CG16892 + chrX 9273145 intergenic Cfp1 -,CG16892 + chrX_10_9270001 chrX_9270001 RAL-461 2318 chrX 9337949 9337968 chrX 9338033 9338080 6 99 2.0 2.5 2.2 1.9 131 chrX 9337949 intron CG34449 - chrX 9338014 intron CG34449 - chrX 9338080 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-461 2319 chrX 9508120 9508164 chrX 9509658 9509672 jockey 7 1533 5.5 2.5 4.0 1.4 1552 chrX 9508120 intron CG32700 - chrX 9508896 intron CG32700 - chrX 9509672 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-461 2320 chrX 9543380 9543421 chrX 9543479 9543520 8 94 6.0 3.0 4.5 1.5 140 chrX 9543380 intron CG32700 - chrX 9543450 intron CG32700 - chrX 9543520 intron CG32700 - chrX_8_9540001 chrX_9540001 RAL-461 2321 chrX 9575780 9575805 chrX 9576119 9576122 mdg3 8 336 4.0 7.5 5.8 1.2 342 chrX 9575780 intron,exon CG32699 -,CG42395 - chrX 9575951 intron,intron CG32699 -,CG42395 - chrX 9576122 intron,exon CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-461 2322 chrX 9575806 9575817 chrX 9576113 9576161 mdg3 6 336 3.5 6.5 5.0 1.0 355 chrX 9575806 intron,exon CG32699 -,CG42395 - chrX 9575984 intron,intron CG32699 -,CG42395 - chrX 9576161 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-461 2323 chrX 9633353 9633381 chrX 9633431 9633487 6 95 0.0 3.5 1.8 2.1 134 chrX 9633353 intron l(1)G0232 - chrX 9633420 intron l(1)G0232 - chrX 9633487 intron l(1)G0232 - chrX_6_9630001 chrX_9630001 RAL-461 2324 chrX 9758028 9758080 chrX 9758133 9758185 4 100 2.5 0.0 1.2 1.8 157 chrX 9758028 intergenic not near genes chrX 9758106 intergenic not near genes chrX 9758185 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-461 2325 chrX 9845361 9845361 chrX 14544906 14544906 6 4699545 8.5 8.0 8.2 0.7 4699545 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544906 intergenic not near genes chrX_6_12195001 chrX_12195001 RAL-461 2326 chrX 10138197 10138248 chrX 10145721 10145762 412 15 7522 5.5 4.0 4.8 2.6 7565 chrX 10138197 intron,intron RhoU +,CR44894 - chrX 10141980 intron,intron RhoU +,CR44894 - chrX 10145762 intron,intron RhoU +,CR44894 - chrX_15_10140001 chrX_10140001 RAL-461 2327 chrX 10151905 10151932 chrX 10152002 10152020 4 95 4.0 4.5 4.2 0.8 115 chrX 10151905 intron CR44894 - chrX 10151962 intron CR44894 - chrX 10152020 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-461 2328 chrX 10267313 10267329 chrX 10276473 10276499 roo 4 9168 0.5 2.0 1.2 1.8 9186 chrX 10267313 3` UTR alpha-Man-I - chrX 10271906 intron alpha-Man-I - chrX 10276499 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-461 2329 chrX 10317549 10317576 chrX 10317637 10317674 8 91 0.0 2.0 1.0 4.0 125 chrX 10317549 intron alpha-Man-I - chrX 10317612 intron alpha-Man-I - chrX 10317674 intron alpha-Man-I - chrX_8_10315001 chrX_10315001 RAL-461 2330 chrX 10320588 10320634 chrX 10320727 10320773 13 138 3.5 1.5 2.5 3.7 185 chrX 10320588 intron alpha-Man-I - chrX 10320680 intron alpha-Man-I - chrX 10320773 intron alpha-Man-I - chrX_13_10320001 chrX_10320001 RAL-461 2331 chrX 10348783 10348826 chrX 10356368 10356401 springer 6 7577 3.0 4.0 3.5 1.3 7618 chrX 10348783 intergenic snoRNA:U3:9B + chrX 10352592 intergenic not near genes chrX 10356401 intergenic l(1)G0289 - chrX_6_10350001 chrX_10350001 RAL-461 2332 chrX 10369092 10369124 chrX 10369276 10369295 10 182 2.5 0.5 1.5 4.0 203 chrX 10369092 intron CG17841 + chrX 10369194 intron CG17841 + chrX 10369295 intron CG17841 + chrX_10_10365001 chrX_10365001 RAL-461 2333 chrX 10446702 10446716 chrX 10446774 10446818 7 95 1.0 3.5 2.2 2.2 116 chrX 10446702 intron CG32683 - chrX 10446760 intron CG32683 - chrX 10446818 intron CG32683 - chrX_7_10445001 chrX_10445001 RAL-461 2334 chrX 10453053 10453101 chrX 10453264 10453311 7 209 2.5 1.0 1.8 2.5 258 chrX 10453053 intron CG32683 - chrX 10453182 intron CG32683 - chrX 10453311 intron CG32683 - chrX_7_10450001 chrX_10450001 RAL-461 2335 chrX 10506512 10506521 chrX 10506599 10506628 5 97 2.0 1.5 1.8 1.8 116 chrX 10506512 intron spri - chrX 10506570 intron spri - chrX 10506628 intron spri - chrX_5_10505001 chrX_10505001 RAL-461 2336 chrX 10550846 10550855 chrX 10552333 10552342 hobo 4 1486 2.5 2.0 2.2 1.2 1496 chrX 10550846 intron spri - chrX 10551594 intron spri - chrX 10552342 intron spri - chrX_4_10550001 chrX_10550001 RAL-461 2337 chrX 10686032 10686079 chrX 10691189 10691236 roo 5 5152 3.0 2.5 2.8 1.3 5204 chrX 10686032 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691236 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-461 2338 chrX 10694157 10694177 chrX 10694247 10694261 4 92 4.0 7.0 5.5 0.6 104 chrX 10694157 intron X11Lbeta + chrX 10694209 intron X11Lbeta + chrX 10694261 intron X11Lbeta + chrX_4_10690001 chrX_10690001 RAL-461 2339 chrX 10719125 10719150 chrX 10719214 10719223 5 92 0.0 4.0 2.0 1.7 98 chrX 10719125 intron CG32676 - chrX 10719174 intron CG32676 - chrX 10719223 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-461 2340 chrX 10803013 10803047 chrX 10803118 10803120 6 94 4.0 6.0 5.0 1.0 107 chrX 10803013 intron Imp - chrX 10803066 intron Imp - chrX 10803120 intron Imp - chrX_6_10800001 chrX_10800001 RAL-461 2341 chrX 10828474 10828501 chrX 10828552 10828597 11 93 2.0 2.0 2.0 3.7 123 chrX 10828474 intergenic not near genes chrX 10828536 intergenic not near genes chrX 10828597 intergenic not near genes chrX_11_10825001 chrX_10825001 RAL-461 2342 chrX 10925503 10925525 chrX 10925602 10925608 6 94 5.0 4.5 4.8 1.0 105 chrX 10925503 exon v + chrX 10925556 3` UTR v + chrX 10925608 3` UTR v + chrX_6_10925001 chrX_10925001 RAL-461 2343 chrX 10960211 10960236 chrX 10960345 10960370 6 134 3.0 4.5 3.8 1.2 159 chrX 10960211 intron Myo10A + chrX 10960290 intron Myo10A + chrX 10960370 intron Myo10A + chrX_6_10960001 chrX_10960001 RAL-461 2344 chrX 11069145 11069180 chrX 11069308 11069343 7 161 5.0 3.0 4.0 1.4 198 chrX 11069145 intergenic not near genes chrX 11069244 intergenic not near genes chrX 11069343 intergenic not near genes chrX_7_11065001 chrX_11065001 RAL-461 2345 chrX 11095984 11096022 chrX 11103106 11103144 HMS-Beagle 9 7121 3.5 5.0 4.2 1.7 7160 chrX 11095984 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103144 intron CG42249 + chrX_9_11095001 chrX_11095001 RAL-461 2346 chrX 11184236 11184264 chrX 11189332 11189360 flea 5 5088 2.0 2.5 2.2 1.6 5124 chrX 11184236 intergenic not near genes chrX 11186798 intergenic not near genes chrX 11189360 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-461 2347 chrX 11203612 11203624 chrX 11203698 11203713 4 92 1.0 3.5 2.2 1.2 101 chrX 11203612 intergenic not near genes chrX 11203662 intergenic not near genes chrX 11203713 intergenic not near genes chrX_4_11200001 chrX_11200001 RAL-461 2348 chrX 11205156 11205182 chrX 11205256 11205277 8 96 6.0 5.5 5.8 1.2 121 chrX 11205156 intergenic not near genes chrX 11205216 intergenic not near genes chrX 11205277 intergenic not near genes chrX_8_11205001 chrX_11205001 RAL-461 2349 chrX 11319864 11319962 chrX 11319961 11320060 4 83 0.0 0.0 0.0 4.0 196 chrX 11319864 intergenic not near genes chrX 11319962 intergenic not near genes chrX 11320060 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-461 2350 chrX 11535023 11535046 chrX 11541513 11541536 Burdock 4 6490 7.0 3.5 5.2 0.6 6513 chrX 11535023 intron Drak + chrX 11538280 intron Drak + chrX 11541536 intron Drak + chrX_4_11535001 chrX_11535001 RAL-461 2351 chrX 11633402 11633446 chrX 11640476 11640520 297 9 7071 3.5 6.5 5.0 1.5 7118 chrX 11633402 intron Ptp10D + chrX 11636961 intron Ptp10D + chrX 11640520 intron Ptp10D + chrX_9_11635001 chrX_11635001 RAL-461 2352 chrX 11645112 11645134 chrX 11648292 11648324 NOF 4 3188 1.0 2.5 1.8 1.4 3212 chrX 11645112 intron Ptp10D + chrX 11646718 intron Ptp10D + chrX 11648324 intron Ptp10D + chrX_4_11645001 chrX_11645001 RAL-461 2353 chrX 11684848 11684900 chrX 11684994 11685046 7 136 5.5 1.0 3.2 1.7 198 chrX 11684848 intron bif + chrX 11684947 intron bif + chrX 11685046 intron bif + chrX_7_11680001 chrX_11680001 RAL-461 2354 chrX 11719866 11719890 chrX 11719961 11719971 6 95 5.0 7.0 6.0 0.9 105 chrX 11719866 3` UTR prtp + chrX 11719918 intergenic prtp +,Tango10 + chrX 11719971 intergenic prtp +,Tango10 + chrX_6_11715001 chrX_11715001 RAL-461 2355 chrX 11783504 11783551 chrX 11783605 11783632 8 97 1.0 4.5 2.8 2.1 128 chrX 11783504 intergenic not near genes chrX 11783568 intergenic not near genes chrX 11783632 intergenic not near genes chrX_8_11780001 chrX_11780001 RAL-461 2356 chrX 11798997 11799038 chrX 11799103 11799144 7 105 0.5 3.5 2.0 2.3 147 chrX 11798997 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799144 intron CkIIbeta + chrX_7_11795001 chrX_11795001 RAL-461 2357 chrX 11915624 11915670 chrX 11915937 11915983 10 312 3.0 2.5 2.8 2.6 359 chrX 11915624 intron pot - chrX 11915804 intron pot - chrX 11915983 intron pot - chrX_10_11915001 chrX_11915001 RAL-461 2358 chrX 11922355 11922378 chrX 11922501 11922529 4 149 1.0 2.5 1.8 1.4 174 chrX 11922355 exon Sclp - chrX 11922442 intron Sclp - chrX 11922529 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-461 2359 chrX 11936551 11936592 chrX 11936670 11936701 8 116 0.0 3.5 1.8 2.9 150 chrX 11936551 intron cac - chrX 11936626 intron cac - chrX 11936701 exon cac - chrX_8_11935001 chrX_11935001 RAL-461 2360 chrX 12109674 12109726 chrX 12109783 12109835 4 98 0.5 3.0 1.8 1.4 161 chrX 12109674 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX 12109754 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX 12109835 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX_4_12105001 chrX_12105001 RAL-461 2361 chrX 12176723 12176769 chrX 12176819 12176864 9 91 1.5 3.5 2.5 2.6 141 chrX 12176723 intron,3` UTR Ten-a +,CG1924 - chrX 12176794 intron,3` UTR Ten-a +,CG1924 - chrX 12176864 intron,3` UTR Ten-a +,CG1924 - chrX_9_12175001 chrX_12175001 RAL-461 2362 chrX 12202753 12202790 chrX 12202856 12202893 4 103 3.0 2.0 2.5 1.1 140 chrX 12202753 intron Ten-a + chrX 12202823 intron Ten-a + chrX 12202893 intron Ten-a + chrX_4_12200001 chrX_12200001 RAL-461 2363 chrX 12245672 12245713 chrX 12245774 12245790 4 96 0.0 1.5 0.8 2.2 118 chrX 12245672 intron Ten-a + chrX 12245731 intron Ten-a + chrX 12245790 intron Ten-a + chrX_4_12245001 chrX_12245001 RAL-461 2364 chrX 12350759 12350798 chrX 12350860 12350878 8 92 1.0 1.5 1.2 3.6 119 chrX 12350759 intergenic not near genes chrX 12350818 intergenic not near genes chrX 12350878 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-461 2365 chrX 12440387 12440403 chrX 12440479 12440505 9 99 0.0 6.0 3.0 2.2 118 chrX 12440387 intron Pkcdelta + chrX 12440446 intron Pkcdelta + chrX 12440505 intron Pkcdelta + chrX_9_12440001 chrX_12440001 RAL-461 2366 chrX 12442073 12442097 chrX 12442169 12442199 11 97 5.0 1.5 3.2 2.6 126 chrX 12442073 intron Pkcdelta + chrX 12442136 intron Pkcdelta + chrX 12442199 intron Pkcdelta + chrX_11_12440001 chrX_12440001 RAL-461 2367 chrX 12465466 12465497 chrX 12465562 12465593 4 92 1.5 0.0 0.8 2.2 127 chrX 12465466 exon CG42258 + chrX 12465530 intron CG42258 + chrX 12465593 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-461 2368 chrX 12557134 12557155 chrX 12557230 12557251 4 96 4.0 1.5 2.8 1.1 117 chrX 12557134 intron CG43921 - chrX 12557192 intron CG43921 - chrX 12557251 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-461 2369 chrX 12557465 12557480 chrX 12557560 12557581 4 98 2.0 0.5 1.2 1.8 116 chrX 12557465 intron CG43921 - chrX 12557523 intron CG43921 - chrX 12557581 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-461 2370 chrX 12718224 12718266 chrX 12718315 12718321 13 93 3.0 2.0 2.5 3.7 97 chrX 12718224 intron,intron Smr -,CR43963 - chrX 12718272 intron,intron Smr -,CR43963 - chrX 12718321 intron,intron Smr -,CR43963 - chrX_13_12715001 chrX_12715001 RAL-461 2371 chrX 12977049 12977058 chrX 12977145 12977154 4 96 0.0 5.5 2.8 1.1 105 chrX 12977049 intergenic not near genes chrX 12977102 intergenic not near genes chrX 12977154 intergenic not near genes chrX_4_12975001 chrX_12975001 RAL-461 2372 chrX 13061339 13061371 chrX 13061462 13061492 5 122 1.5 0.5 1.0 2.5 153 chrX 13061339 intron rad + chrX 13061416 intron rad + chrX 13061492 intron rad + chrX_5_13060001 chrX_13060001 RAL-461 2373 chrX 13109331 13109364 chrX 13109432 13109473 7 101 3.5 1.5 2.5 2.0 142 chrX 13109331 intron CG43313 - chrX 13109402 intron CG43313 - chrX 13109473 intron CG43313 - chrX_7_13105001 chrX_13105001 RAL-461 2374 chrX 13146575 13146630 chrX 13146683 13146738 17 107 3.0 4.0 3.5 3.8 163 chrX 13146575 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146738 intron CG32645 + chrX_17_13145001 chrX_13145001 RAL-461 2375 chrX 13236883 13236892 chrX 13236982 13236997 4 102 1.5 3.5 2.5 1.1 114 chrX 13236883 intron mew - chrX 13236940 intron mew - chrX 13236997 intron mew - chrX_4_13235001 chrX_13235001 RAL-461 2376 chrX 13401471 13401483 chrX 13401843 13401855 jockey 5 372 3.5 2.0 2.8 1.3 384 chrX 13401471 intergenic CG1673 +,CG12725 - chrX 13401663 intergenic CG12725 -,CG1673 + chrX 13401855 3` UTR CG12725 - chrX_5_13400001 chrX_13400001 RAL-461 2377 chrX 13401484 13401510 chrX 13401835 13401882 jockey 8 365 3.5 2.0 2.8 2.1 398 chrX 13401484 intergenic CG1673 +,CG12725 - chrX 13401683 intergenic CG12725 -,CG1673 + chrX 13401882 3` UTR CG12725 - chrX_8_13400001 chrX_13400001 RAL-461 2378 chrX 13403001 13403032 chrX 13403148 13403179 X-element 5 146 5.0 2.0 3.5 1.1 178 chrX 13403001 intergenic CG12725 - chrX 13403090 intergenic CG12725 - chrX 13403179 intergenic CG12725 - chrX_5_13400001 chrX_13400001 RAL-461 2379 chrX 13429445 13429477 chrX 13430614 13430646 jockey 4 1169 5.0 4.0 4.5 0.7 1201 chrX 13429445 intergenic not near genes chrX 13430046 intergenic not near genes chrX 13430646 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-461 2380 chrX 13463634 13463667 chrX 13469231 13469261 mdg3 4 5596 3.5 3.5 3.5 0.9 5627 chrX 13463634 intron Neto + chrX 13466448 intron Neto + chrX 13469261 intron Neto + chrX_4_13465001 chrX_13465001 RAL-461 2381 chrX 13491796 13491825 chrX 13491912 13491921 7 111 1.5 0.5 1.0 3.5 125 chrX 13491796 intron Neto + chrX 13491858 intron Neto + chrX 13491921 intron Neto + chrX_7_13490001 chrX_13490001 RAL-461 2382 chrX 13843369 13843399 chrX 13843542 13843572 6 171 2.5 1.5 2.0 2.0 203 chrX 13843369 intron AMPdeam - chrX 13843470 intron AMPdeam - chrX 13843572 intron AMPdeam - chrX_6_13840001 chrX_13840001 RAL-461 2383 chrX 13894657 13894703 chrX 13894748 13894799 9 82 5.0 0.5 2.8 2.4 142 chrX 13894657 intron mamo - chrX 13894728 intron mamo - chrX 13894799 intron mamo - chrX_9_13890001 chrX_13890001 RAL-461 2384 chrX 13937958 13937992 chrX 13941249 13941283 I-element 5 3288 1.5 1.0 1.2 2.3 3325 chrX 13937958 intron mamo - chrX 13939620 intron mamo - chrX 13941283 intron mamo - chrX_5_13935001 chrX_13935001 RAL-461 2385 chrX 13057298 13057304 chrX 13966949 13966949 4 909648 17.5 6.5 12.0 0.3 909651 chrX 13057298 intron rad + chrX 13512124 intron Neto + chrX 13966949 intron mamo - chrX_4_13510001 chrX_13510001 RAL-461 2386 chrX 14105007 14105037 chrX 14114178 14114192 roo 4 9161 5.5 2.5 4.0 0.8 9185 chrX 14105007 intergenic not near genes chrX 14109600 intergenic not near genes chrX 14114192 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-461 2387 chrX 14131468 14131523 chrX 14131568 14131588 6 83 0.0 2.0 1.0 3.0 120 chrX 14131468 intergenic not near genes chrX 14131528 intergenic not near genes chrX 14131588 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-461 2388 chrX 14142871 14142906 chrX 14142968 14143003 4 97 1.0 2.0 1.5 1.6 132 chrX 14142871 intergenic not near genes chrX 14142937 intergenic not near genes chrX 14143003 intergenic not near genes chrX_4_14140001 chrX_14140001 RAL-461 2389 chrX 14157571 14157607 chrX 14163248 14163263 297 5 5668 4.5 2.0 3.2 1.2 5692 chrX 14157571 intergenic not near genes chrX 14160417 intergenic not near genes chrX 14163263 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-461 2390 chrX 14209444 14209490 chrX 14209555 14209581 9 107 5.0 2.5 3.8 1.9 137 chrX 14209444 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209512 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209581 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-461 2391 chrX 14366527 14366543 chrX 14366627 14366643 4 100 5.0 2.5 3.8 0.8 116 chrX 14366527 intron dpr8 + chrX 14366585 intron dpr8 + chrX 14366643 intron dpr8 + chrX_4_14365001 chrX_14365001 RAL-461 2392 chrX 14395096 14395128 chrX 14395215 14395233 4 116 2.5 3.0 2.8 1.1 137 chrX 14395096 intron dpr8 + chrX 14395164 intron dpr8 + chrX 14395233 intron dpr8 + chrX_4_14395001 chrX_14395001 RAL-461 2393 chrX 14407247 14407274 chrX 14407349 14407376 11 99 1.5 4.0 2.8 2.9 129 chrX 14407247 intron dpr8 + chrX 14407312 intron dpr8 + chrX 14407376 intron dpr8 + chrX_11_14405001 chrX_14405001 RAL-461 2394 chrX 14411242 14411292 chrX 14411335 14411390 16 90 1.5 2.0 1.8 5.7 148 chrX 14411242 intron dpr8 + chrX 14411316 intron dpr8 + chrX 14411390 intron dpr8 + chrX_16_14410001 chrX_14410001 RAL-461 2395 chrX 14416302 14416315 chrX 14421090 14421103 F-element 5 4788 3.5 2.5 3.0 1.2 4801 chrX 14416302 intron dpr8 + chrX 14418702 intron dpr8 + chrX 14421103 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-461 2396 chrX 14484958 14484995 chrX 14485067 14485074 6 103 0.0 3.5 1.8 2.1 116 chrX 14484958 intergenic not near genes chrX 14485016 intergenic not near genes chrX 14485074 intergenic not near genes chrX_6_14485001 chrX_14485001 RAL-461 2397 chrX 14531346 14531380 chrX 14531454 14531489 12 105 2.0 2.5 2.2 3.8 143 chrX 14531346 intergenic not near genes chrX 14531418 intergenic not near genes chrX 14531489 intergenic not near genes chrX_12_14530001 chrX_14530001 RAL-461 2398 chrX 14636448 14636497 chrX 14641906 14641911 I-element 5 5443 0.5 2.0 1.2 2.3 5463 chrX 14636448 intron NetA - chrX 14639180 intron NetA - chrX 14641911 intron NetA - chrX_5_14635001 chrX_14635001 RAL-461 2399 chrX 14762169 14762201 chrX 14762268 14762300 11 97 4.0 6.5 5.2 1.8 131 chrX 14762169 intron CG15890 - chrX 14762234 intron CG15890 - chrX 14762300 intron CG15890 - chrX_11_14760001 chrX_14760001 RAL-461 2400 chrX 14767940 14767974 chrX 14768040 14768074 5 100 3.0 1.5 2.2 1.6 134 chrX 14767940 intergenic not near genes chrX 14768007 intergenic not near genes chrX 14768074 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-461 2401 chrX 14768832 14768869 chrX 14768933 14768965 9 95 4.0 2.5 3.2 2.1 133 chrX 14768832 intergenic not near genes chrX 14768898 intergenic not near genes chrX 14768965 intergenic not near genes chrX_9_14765001 chrX_14765001 RAL-461 2402 chrX 14778020 14778052 chrX 14782832 14782869 Doc 14 4814 5.5 10.0 7.8 1.6 4849 chrX 14778020 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782869 intergenic Ag5r2 - chrX_14_14780001 chrX_14780001 RAL-461 2403 chrX 14806753 14806781 chrX 14806846 14806889 10 103 1.5 0.0 0.8 5.6 136 chrX 14806753 intron rut - chrX 14806821 intron rut - chrX 14806889 intron rut - chrX_10_14805001 chrX_14805001 RAL-461 2404 chrX 14809555 14809597 chrX 14809661 14809704 11 103 5.0 4.5 4.8 1.9 149 chrX 14809555 intron rut - chrX 14809630 intron rut - chrX 14809704 intron rut - chrX_11_14805001 chrX_14805001 RAL-461 2405 chrX 14861938 14861953 chrX 14862132 14862156 4 200 23.5 18.5 21.0 0.2 218 chrX 14861938 intron Flo2 + chrX 14862047 intron Flo2 + chrX 14862156 intron Flo2 + chrX_4_14860001 chrX_14860001 RAL-461 2406 chrX 14890473 14890494 chrX 14890550 14890580 4 75 2.0 1.5 1.8 1.4 107 chrX 14890473 intron,intron Flo2 +,CG9514 - chrX 14890526 intron,intron Flo2 +,CG9514 - chrX 14890580 intron,intron Flo2 +,CG9514 - chrX_4_14890001 chrX_14890001 RAL-461 2407 chrX 14936841 14936874 chrX 14946118 14946132 roo 10 9274 8.5 2.5 5.5 1.5 9291 chrX 14936841 intron pdgy - chrX 14941486 intron pdgy - chrX 14946132 intron pdgy - chrX_10_14940001 chrX_14940001 RAL-461 2408 chrX 14968054 14968092 chrX 14968153 14968179 5 96 0.0 1.5 0.8 2.8 125 chrX 14968054 intron eag + chrX 14968116 intron eag + chrX 14968179 intron eag + chrX_5_14965001 chrX_14965001 RAL-461 2409 chrX 15127224 15127227 chrX 15127336 15127339 4 112 6.5 4.5 5.5 0.6 115 chrX 15127224 intron drd + chrX 15127282 intron drd + chrX 15127339 intron drd + chrX_4_15125001 chrX_15125001 RAL-461 2410 chrX 15228481 15228524 chrX 15228747 15228780 8 263 2.0 3.5 2.8 2.1 299 chrX 15228481 intergenic CG9101 - chrX 15228630 intergenic CG9101 - chrX 15228780 3` UTR CG9101 - chrX_8_15225001 chrX_15225001 RAL-461 2411 chrX 15248268 15248289 chrX 15248340 15248385 7 88 2.0 2.5 2.2 2.2 117 chrX 15248268 intergenic not near genes chrX 15248326 intergenic not near genes chrX 15248385 intergenic not near genes chrX_7_15245001 chrX_15245001 RAL-461 2412 chrX 15409649 15409677 chrX 15409743 15409766 6 95 4.5 8.0 6.2 0.8 117 chrX 15409649 intron Cngl - chrX 15409708 intron Cngl - chrX 15409766 intron Cngl - chrX_6_15405001 chrX_15405001 RAL-461 2413 chrX 15413068 15413084 chrX 15417355 15417360 Juan 4 4300 4.0 0.5 2.2 1.2 4292 chrX 15413068 intron Cngl - chrX 15415214 intron Cngl - chrX 15417360 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-461 2414 chrX 15421925 15421949 chrX 15423435 15423475 pogo 7 1520 6.0 1.5 3.8 1.5 1550 chrX 15421925 intron Cngl - chrX 15422700 intron Cngl - chrX 15423475 intron Cngl - chrX_7_15420001 chrX_15420001 RAL-461 2415 chrX 15442357 15442390 chrX 15442512 15442555 5 162 1.0 4.0 2.5 1.4 198 chrX 15442357 intergenic not near genes chrX 15442456 intergenic not near genes chrX 15442555 intergenic not near genes chrX_5_15440001 chrX_15440001 RAL-461 2416 chrX 15455536 15455579 chrX 15455633 15455666 14 96 2.0 1.5 1.8 5.0 130 chrX 15455536 3` UTR CG11655 + chrX 15455601 3` UTR shtd - chrX 15455666 3` UTR shtd - chrX_14_15455001 chrX_15455001 RAL-461 2417 chrX 15497573 15497611 chrX 15497683 15497701 7 107 0.5 1.0 0.8 3.9 128 chrX 15497573 intron,3` UTR Gmap +,CR44888 - chrX 15497637 intron,3` UTR Gmap +,CR44888 - chrX 15497701 intron,3` UTR Gmap +,CR44888 - chrX_7_15495001 chrX_15495001 RAL-461 2418 chrX 15531264 15531295 chrX 15531624 15531660 5 363 3.5 5.0 4.2 1.0 396 chrX 15531264 intron Ac13E - chrX 15531462 intron Ac13E - chrX 15531660 intron Ac13E - chrX_5_15530001 chrX_15530001 RAL-461 2419 chrX 15536690 15536705 chrX 15536787 15536802 4 95 7.5 7.0 7.2 0.5 112 chrX 15536690 intron Ac13E - chrX 15536746 intron Ac13E - chrX 15536802 intron Ac13E - chrX_4_15535001 chrX_15535001 RAL-461 2420 chrX 15565621 15565662 chrX 15565727 15565768 10 100 3.5 3.5 3.5 2.2 147 chrX 15565621 intergenic not near genes chrX 15565694 intergenic not near genes chrX 15565768 intergenic not near genes chrX_10_15565001 chrX_15565001 RAL-461 2421 chrX 15659569 15659605 chrX 15659794 15659830 10 223 2.5 0.0 1.2 4.5 261 chrX 15659569 intergenic not near genes chrX 15659700 intergenic not near genes chrX 15659830 intergenic not near genes chrX_10_15655001 chrX_15655001 RAL-461 2422 chrX 15669859 15669893 chrX 15669968 15670002 4 107 2.5 4.0 3.2 1.0 143 chrX 15669859 intron CG15646 - chrX 15669930 intron CG15646 - chrX 15670002 intron CG15646 - chrX_4_15665001 chrX_15665001 RAL-461 2423 chrX 15681387 15681412 chrX 15681479 15681514 11 98 2.5 3.0 2.8 2.9 127 chrX 15681387 intergenic not near genes chrX 15681450 intergenic not near genes chrX 15681514 intergenic not near genes chrX_11_15680001 chrX_15680001 RAL-461 2424 chrX 15939250 15939263 chrX 15939355 15939368 5 105 10.5 3.5 7.0 0.6 118 chrX 15939250 intron Stim - chrX 15939309 intron Stim - chrX 15939368 intron Stim - chrX_5_15935001 chrX_15935001 RAL-461 2425 chrX 15952214 15952242 chrX 15952315 15952341 6 100 6.0 4.0 5.0 1.0 127 chrX 15952214 intron mmd - chrX 15952278 intron mmd - chrX 15952341 intron mmd - chrX_6_15950001 chrX_15950001 RAL-461 2426 chrX 15959528 15959557 chrX 15959636 15959664 9 106 4.5 3.5 4.0 1.8 136 chrX 15959528 intron mmd - chrX 15959596 intron mmd - chrX 15959664 intron mmd - chrX_9_15955001 chrX_15955001 RAL-461 2427 chrX 15969492 15969531 chrX 15969623 15969662 10 131 2.5 2.0 2.2 3.1 170 chrX 15969492 intron mmd - chrX 15969577 intron mmd - chrX 15969662 intron mmd - chrX_10_15965001 chrX_15965001 RAL-461 2428 chrX 16222775 16222805 chrX 16231144 16231174 roo 5 8370 3.0 4.0 3.5 1.1 8399 chrX 16222775 intergenic not near genes chrX 16226974 intergenic not near genes chrX 16231174 intergenic not near genes chrX_5_16225001 chrX_16225001 RAL-461 2429 chrX 16253847 16253891 chrX 16253945 16253980 5 96 0.0 2.5 1.2 2.3 133 chrX 16253847 intergenic snRNA:U5:14B - chrX 16253914 intergenic snRNA:U5:14B - chrX 16253980 intergenic snRNA:U5:14B - chrX_5_16250001 chrX_16250001 RAL-461 2430 chrX 16295524 16295526 chrX 16295612 16295629 4 100 10.0 0.0 5.0 0.7 105 chrX 16295524 intron CG9911 - chrX 16295576 intron CG9911 - chrX 16295629 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-461 2431 chrX 16340647 16340698 chrX 16349822 16349875 roo 8 9175 1.0 5.0 3.0 2.0 9228 chrX 16340647 intergenic Dsp1 + chrX 16345261 intergenic not near genes chrX 16349875 intergenic sl + chrX_8_16345001 chrX_16345001 RAL-461 2432 chrX 16404340 16404373 chrX 16404456 16404489 6 110 8.0 3.5 5.8 0.9 149 chrX 16404340 intron CG9981 - chrX 16404414 intron CG9981 - chrX 16404489 intron CG9981 - chrX_6_16400001 chrX_16400001 RAL-461 2433 chrX 16404377 16404385 chrX 16404448 16404495 5 103 6.0 2.0 4.0 1.0 118 chrX 16404377 intron CG9981 - chrX 16404436 intron CG9981 - chrX 16404495 intron CG9981 - chrX_5_16400001 chrX_16400001 RAL-461 2434 chrX 16437596 16437636 chrX 16437703 16437744 9 102 2.5 6.5 4.5 1.6 148 chrX 16437596 3` UTR,3` UTR hang +,CG9947 - chrX 16437670 3` UTR,3` UTR hang +,CG9947 - chrX 16437744 3` UTR,3` UTR hang +,CG9947 - chrX_9_16435001 chrX_16435001 RAL-461 2435 chrX 16492632 16492675 chrX 16498229 16498272 mdg3 13 5594 9.5 4.5 7.0 1.6 5640 chrX 16492632 intron para - chrX 16495452 intron para - chrX 16498272 exon para - chrX_13_16495001 chrX_16495001 RAL-461 2436 chrX 16623467 16623511 chrX 16623573 16623582 4 94 1.5 1.5 1.5 1.6 115 chrX 16623467 intergenic not near genes chrX 16623524 intergenic Rok - chrX 16623582 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-461 2437 chrX 16650922 16650946 chrX 16651013 16651033 8 91 6.0 0.0 3.0 2.0 111 chrX 16650922 intergenic CG32573 +,CG42512 + chrX 16650978 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_8_16650001 chrX_16650001 RAL-461 2438 chrX 16689621 16689646 chrX 16689712 16689752 5 86 2.5 2.5 2.5 1.4 131 chrX 16689621 intron Sep4 - chrX 16689686 intron Sep4 - chrX 16689752 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-461 2439 chrX 16785261 16785301 chrX 16785385 16785425 13 121 4.0 4.5 4.2 2.5 164 chrX 16785261 3` UTR CG9609 - chrX 16785343 3` UTR CG9609 - chrX 16785425 3` UTR CG9609 - chrX_13_16785001 chrX_16785001 RAL-461 2440 chrX 16821221 16821261 chrX 16821320 16821358 6 99 2.0 4.0 3.0 1.5 137 chrX 16821221 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821358 intron CG4829 + chrX_6_16820001 chrX_16820001 RAL-461 2441 chrX 16906636 16906679 chrX 16906743 16906786 8 104 1.0 4.5 2.8 2.1 150 chrX 16906636 intron CR44754 - chrX 16906711 intron CR44754 - chrX 16906786 intron CR44754 - chrX_8_16905001 chrX_16905001 RAL-461 2442 chrX 16936007 16936027 chrX 16936445 16936465 jockey 4 438 0.0 5.5 2.8 1.1 458 chrX 16936007 intron CG4928 + chrX 16936236 intron CG4928 + chrX 16936465 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-461 2443 chrX 1053117 1053120 chrX 16983076 16983076 5 15929958 2.0 17.0 9.5 0.5 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-461 2444 chrX 16983077 16983077 chrX 19404963 19404965 4 2421887 17.0 4.5 10.8 0.3 2421888 chrX 16983077 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-461 2445 chrX 17057918 17057963 chrX 17058179 17058203 pogo 6 255 2.0 2.0 2.0 2.0 285 chrX 17057918 intron CG45002 - chrX 17058060 intron CG45002 - chrX 17058203 intron CG45002 - chrX_6_17055001 chrX_17055001 RAL-461 2446 chrX 17063176 17063207 chrX 17063271 17063314 16 106 4.0 4.5 4.2 3.1 138 chrX 17063176 intron CG45002 - chrX 17063245 intron CG45002 - chrX 17063314 intron CG45002 - chrX_16_17060001 chrX_17060001 RAL-461 2447 chrX 17088192 17088201 chrX 17088776 17088814 6 606 0.5 2.0 1.2 2.7 622 chrX 17088192 intergenic not near genes chrX 17088503 intergenic not near genes chrX 17088814 intergenic not near genes chrX_6_17085001 chrX_17085001 RAL-461 2448 chrX 17195200 17195236 chrX 17200291 17200307 flea 17 5097 3.0 4.5 3.8 3.5 5107 chrX 17195200 3` UTR baz + chrX 17197754 3` UTR baz + chrX 17200307 3` UTR baz + chrX_17_17195001 chrX_17195001 RAL-461 2449 chrX 17205843 17205852 chrX 17205942 17205955 4 106 6.5 6.5 6.5 0.5 112 chrX 17205843 intergenic not near genes chrX 17205899 intergenic not near genes chrX 17205955 intergenic CG32564 + chrX_4_17205001 chrX_17205001 RAL-461 2450 chrX 17229935 17229965 chrX 17230058 17230088 5 121 3.5 0.5 2.0 1.7 153 chrX 17229935 intergenic CG10597 - chrX 17230012 intergenic CG10597 - chrX 17230088 intergenic CG10597 - chrX_5_17230001 chrX_17230001 RAL-461 2451 chrX 17290046 17290079 chrX 17290142 17290175 10 94 6.5 2.0 4.2 1.9 129 chrX 17290046 intron,intron CG5445 +,Fim - chrX 17290110 intron,intron CG5445 +,Fim - chrX 17290175 intron,intron CG5445 +,Fim - chrX_10_17290001 chrX_17290001 RAL-461 2452 chrX 17303591 17303605 chrX 17303687 17303701 4 96 8.0 5.0 6.5 0.5 110 chrX 17303591 intron CG5445 + chrX 17303646 intron CG5445 + chrX 17303701 intron CG5445 + chrX_4_17300001 chrX_17300001 RAL-461 2453 chrX 17352578 17352620 chrX 17352692 17352708 10 112 0.0 5.5 2.8 2.6 130 chrX 17352578 intergenic not near genes chrX 17352643 intergenic not near genes chrX 17352708 intergenic not near genes chrX_10_17350001 chrX_17350001 RAL-461 2454 chrX 17502330 17502369 chrX 17502430 17502454 11 97 2.5 4.5 3.5 2.4 124 chrX 17502330 intron CG43658 - chrX 17502392 intron CG43658 - chrX 17502454 intron CG43658 - chrX_11_17500001 chrX_17500001 RAL-461 2455 chrX 17685455 17685468 chrX 17685547 17685550 5 93 1.5 4.5 3.0 1.2 95 chrX 17685455 intron chas - chrX 17685502 intron chas - chrX 17685550 intron chas - chrX_5_17685001 chrX_17685001 RAL-461 2456 chrX 17708814 17708858 chrX 17708911 17708957 5 98 3.0 4.0 3.5 1.1 143 chrX 17708814 intron CG8173 - chrX 17708886 intron CG8173 - chrX 17708957 intron CG8173 - chrX_5_17705001 chrX_17705001 RAL-461 2457 chrX 17716581 17716592 chrX 17716672 17716693 4 101 3.0 0.0 1.5 1.6 112 chrX 17716581 intron CG42684 + chrX 17716637 intron CG42684 + chrX 17716693 intron CG42684 + chrX_4_17715001 chrX_17715001 RAL-461 2458 chrX 17741319 17741371 chrX 17741485 17741530 9 160 0.0 6.5 3.2 2.1 211 chrX 17741319 intron CG42684 + chrX 17741424 intron CG42684 + chrX 17741530 intron CG42684 + chrX_9_17740001 chrX_17740001 RAL-461 2459 chrX 17881473 17881500 chrX 17881681 17881709 6 214 2.0 1.0 1.5 2.4 236 chrX 17881473 intron mnb - chrX 17881591 intron mnb - chrX 17881709 intron mnb - chrX_6_17880001 chrX_17880001 RAL-461 2460 chrX 17911839 17911872 chrX 17911947 17911970 8 101 1.5 2.0 1.8 2.9 131 chrX 17911839 intron CG6847 + chrX 17911904 intron CG6847 + chrX 17911970 intron CG6847 + chrX_8_17910001 chrX_17910001 RAL-461 2461 chrX 17965692 17965739 chrX 17965789 17965836 13 94 4.0 0.5 2.2 4.1 144 chrX 17965692 intron Sh - chrX 17965764 intron Sh - chrX 17965836 intron Sh - chrX_13_17965001 chrX_17965001 RAL-461 2462 chrX 17966581 17966621 chrX 17966692 17966732 5 108 3.5 2.5 3.0 1.2 151 chrX 17966581 intron Sh - chrX 17966656 intron Sh - chrX 17966732 intron Sh - chrX_5_17965001 chrX_17965001 RAL-461 2463 chrX 17968890 17968901 chrX 17969028 17969039 5 138 6.0 4.5 5.2 0.8 149 chrX 17968890 intron Sh - chrX 17968964 intron Sh - chrX 17969039 intron Sh - chrX_5_17965001 chrX_17965001 RAL-461 2464 chrX 17968903 17968930 chrX 17969020 17969028 9 129 3.0 3.5 3.2 2.1 125 chrX 17968903 intron Sh - chrX 17968966 intron Sh - chrX 17969028 intron Sh - chrX_9_17965001 chrX_17965001 RAL-461 2465 chrX 18093644 18093690 chrX 18093866 18093876 6 214 4.0 5.0 4.5 1.1 232 chrX 18093644 5` UTR RhoGAP16F + chrX 18093760 5` UTR RhoGAP16F + chrX 18093876 5` UTR RhoGAP16F + chrX_6_18090001 chrX_18090001 RAL-461 2466 chrX 18122821 18122848 chrX 18122897 18122944 8 92 1.0 3.0 2.0 2.7 123 chrX 18122821 5` UTR CR45606 + chrX 18122882 5` UTR CR45606 + chrX 18122944 intergenic CR45606 + chrX_8_18120001 chrX_18120001 RAL-461 2467 chrX 18194047 18194102 chrX 18194602 18194647 BS 14 552 5.0 2.5 3.8 2.9 600 chrX 18194047 intron Frq2 + chrX 18194347 intron Frq2 + chrX 18194647 intron Frq2 + chrX_14_18190001 chrX_18190001 RAL-461 2468 chrX 18429477 18429527 chrX 18434808 18434853 Transpac 15 5326 5.5 3.0 4.2 2.9 5376 chrX 18429477 intergenic not near genes chrX 18432165 intergenic not near genes chrX 18434853 intergenic not near genes chrX_15_18430001 chrX_18430001 RAL-461 2469 chrX 18467212 18467238 chrX 18467395 18467402 5 180 2.5 4.0 3.2 1.2 190 chrX 18467212 intron CG32547 - chrX 18467307 intron CG32547 - chrX 18467402 intron CG32547 - chrX_5_18465001 chrX_18465001 RAL-461 2470 chrX 18467242 18467246 chrX 18467390 18467403 6 157 2.0 3.5 2.8 1.6 161 chrX 18467242 intron CG32547 - chrX 18467322 intron CG32547 - chrX 18467403 intron CG32547 - chrX_6_18465001 chrX_18465001 RAL-461 2471 chrX 18558758 18558782 chrX 18558860 18558884 7 102 4.5 1.5 3.0 1.8 126 chrX 18558758 intron Bx + chrX 18558821 intron Bx + chrX 18558884 intron Bx + chrX_7_18555001 chrX_18555001 RAL-461 2472 chrX 18574778 18574820 chrX 18574878 18574920 13 98 0.0 1.0 0.5 8.7 142 chrX 18574778 intergenic not near genes chrX 18574849 intergenic not near genes chrX 18574920 intergenic not near genes chrX_13_18570001 chrX_18570001 RAL-461 2473 chrX 18576081 18576102 chrX 18576179 18576200 9 96 0.0 3.5 1.8 3.2 119 chrX 18576081 intergenic not near genes chrX 18576140 intergenic not near genes chrX 18576200 intergenic not near genes chrX_9_18575001 chrX_18575001 RAL-461 2474 chrX 18645007 18645028 chrX 18645125 18645146 6 116 3.5 1.5 2.5 1.7 139 chrX 18645007 intron Rip11 - chrX 18645076 intron Rip11 - chrX 18645146 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-461 2475 chrX 18645032 18645044 chrX 18645113 18645161 6 106 2.0 1.5 1.8 2.1 129 chrX 18645032 intron Rip11 - chrX 18645096 intron Rip11 - chrX 18645161 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-461 2476 chrX 18671203 18671243 chrX 18671305 18671345 9 102 3.0 2.0 2.5 2.6 142 chrX 18671203 intergenic not near genes chrX 18671274 intergenic not near genes chrX 18671345 intergenic not near genes chrX_9_18670001 chrX_18670001 RAL-461 2477 chrX 18698843 18698878 chrX 18698975 18698994 12 133 4.5 8.0 6.2 1.7 151 chrX 18698843 intergenic not near genes chrX 18698918 intergenic not near genes chrX 18698994 intergenic not near genes chrX_12_18695001 chrX_18695001 RAL-461 2478 chrX 18774430 18774470 chrX 18774535 18774575 8 104 3.0 2.0 2.5 2.3 145 chrX 18774430 intergenic CCKLR-17D3 - chrX 18774502 intergenic CCKLR-17D3 - chrX 18774575 intergenic not near genes chrX_8_18770001 chrX_18770001 RAL-461 2479 chrX 18946168 18946172 chrX 18946275 18946279 4 107 1.0 2.0 1.5 1.6 111 chrX 18946168 intron CG43759 + chrX 18946224 intron CG43759 + chrX 18946279 intron CG43759 + chrX_4_18945001 chrX_18945001 RAL-461 2480 chrX 18947483 18947527 chrX 18947595 18947638 8 110 2.0 3.5 2.8 2.1 155 chrX 18947483 intron CG43759 + chrX 18947560 intron CG43759 + chrX 18947638 intron CG43759 + chrX_8_18945001 chrX_18945001 RAL-461 2481 chrX 18997688 18997714 chrX 18997899 18997900 5 202 3.0 1.0 2.0 1.7 212 chrX 18997688 intron CG43759 + chrX 18997794 intron CG43759 + chrX 18997900 intron CG43759 + chrX_5_18995001 chrX_18995001 RAL-461 2482 chrX 19060400 19060434 chrX 19065194 19065238 Doc 9 4802 5.0 3.5 4.2 1.7 4838 chrX 19060400 intron CG14190 + chrX 19062819 intron CG14190 + chrX 19065238 intron CG14190 + chrX_9_19060001 chrX_19060001 RAL-461 2483 chrX 19073665 19073692 chrX 19073772 19073773 6 103 3.0 3.0 3.0 1.5 108 chrX 19073665 intergenic not near genes chrX 19073719 intergenic not near genes chrX 19073773 intergenic not near genes chrX_6_19070001 chrX_19070001 RAL-461 2484 chrX 19080325 19080342 chrX 19080432 19080468 4 121 5.5 4.0 4.8 0.7 143 chrX 19080325 intergenic not near genes chrX 19080396 intergenic not near genes chrX 19080468 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-461 2485 chrX 19098739 19098774 chrX 19098836 19098872 4 97 4.0 2.0 3.0 1.0 133 chrX 19098739 intergenic not near genes chrX 19098806 intergenic not near genes chrX 19098872 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-461 2486 chrX 19124419 19124464 chrX 19124526 19124573 9 107 1.5 2.5 2.0 3.0 154 chrX 19124419 intergenic CG15882 - chrX 19124496 intergenic CG15882 - chrX 19124573 intergenic CG15882 -,tgy - chrX_9_19120001 chrX_19120001 RAL-461 2487 chrX 19125665 19125693 chrX 19125762 19125762 5 86 3.0 3.5 3.2 1.2 97 chrX 19125665 intron tgy - chrX 19125714 intron tgy - chrX 19125762 intron tgy - chrX_5_19125001 chrX_19125001 RAL-461 2488 chrX 19136535 19136584 chrX 19143475 19143484 412 7 6934 2.5 4.0 3.2 1.7 6949 chrX 19136535 intergenic not near genes chrX 19140010 intergenic not near genes chrX 19143484 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-461 2489 chrX 19176197 19176237 chrX 19176294 19176320 6 86 2.0 1.0 1.5 2.4 123 chrX 19176197 3` UTR CG7556 - chrX 19176258 3` UTR CG7556 - chrX 19176320 3` UTR CG7556 - chrX_6_19175001 chrX_19175001 RAL-461 2490 chrX 19182004 19182045 chrX 19182136 19182177 9 131 1.0 2.0 1.5 3.6 173 chrX 19182004 3` UTR CG7453 + chrX 19182090 intergenic CG7453 + chrX 19182177 intergenic CG7453 + chrX_9_19180001 chrX_19180001 RAL-461 2491 chrX 13057298 13057303 chrX 19242812 19242814 4 6185514 18.0 17.0 17.5 0.2 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-461 2492 chrX 19330445 19330466 chrX 19330585 19330596 4 137 2.5 4.5 3.5 0.9 151 chrX 19330445 intron nAChRalpha7 - chrX 19330520 intron nAChRalpha7 - chrX 19330596 intron nAChRalpha7 - chrX_4_19330001 chrX_19330001 RAL-461 2493 chrX 19356984 19357019 chrX 19358440 19358498 NOF 4 1464 3.5 1.0 2.2 1.2 1514 chrX 19356984 intron kek5 + chrX 19357741 intron kek5 + chrX 19358498 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-461 2494 chrX 19380135 19380185 chrX 19380396 19380446 pogo 10 258 3.5 3.5 3.5 2.2 311 chrX 19380135 intron kek5 + chrX 19380290 intron kek5 + chrX 19380446 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-461 2495 chrX 16983076 16983076 chrX 19404963 19404965 9 2421888 17.0 4.5 10.8 0.8 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_9_18190001 chrX_18190001 RAL-461 2496 chrX 19463710 19463743 chrX 19464140 19464173 10 427 8.0 3.5 5.8 1.5 463 chrX 19463710 intron kek5 + chrX 19463942 intron kek5 + chrX 19464173 intron kek5 + chrX_10_19460001 chrX_19460001 RAL-461 2497 chrX 19472119 19472146 chrX 19472699 19472703 jockey 4 579 2.0 4.0 3.0 1.0 584 chrX 19472119 intergenic kek5 + chrX 19472411 intergenic kek5 + chrX 19472703 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-461 2498 chrX 19541409 19541447 chrX 19541509 19541536 9 98 2.5 2.5 2.5 2.6 127 chrX 19541409 intron CG32532 - chrX 19541472 intron CG32532 - chrX 19541536 intron CG32532 - chrX_9_19540001 chrX_19540001 RAL-461 2499 chrX 19821731 19821751 chrX 19821820 19821855 4 104 3.0 0.5 1.8 1.4 124 chrX 19821731 intergenic not near genes chrX 19821793 intergenic not near genes chrX 19821855 intergenic not near genes chrX_4_19820001 chrX_19820001 RAL-461 2500 chrX 19881440 19881484 chrX 19881536 19881585 8 94 2.0 3.0 2.5 2.3 145 chrX 19881440 intron Hers + chrX 19881512 intron Hers + chrX 19881585 intron Hers + chrX_8_19880001 chrX_19880001 RAL-461 2501 chrX 19971801 19971825 chrX 19971898 19971922 6 96 6.5 4.5 5.5 0.9 121 chrX 19971801 intergenic not near genes chrX 19971862 intergenic not near genes chrX 19971922 intergenic not near genes chrX_6_19970001 chrX_19970001 RAL-461 2502 chrX 19976054 19976083 chrX 19976143 19976184 4 98 0.5 2.0 1.2 1.8 130 chrX 19976054 intergenic not near genes chrX 19976119 intergenic not near genes chrX 19976184 intergenic not near genes chrX_4_19975001 chrX_19975001 RAL-461 2503 chrX 19984544 19984573 chrX 19984628 19984677 5 95 2.5 1.5 2.0 1.7 133 chrX 19984544 intergenic not near genes chrX 19984610 intergenic not near genes chrX 19984677 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-461 2504 chrX 20041511 20041566 chrX 20041610 20041641 15 93 2.5 2.5 2.5 4.3 130 chrX 20041511 intron Dop2R - chrX 20041576 intron Dop2R - chrX 20041641 intron Dop2R - chrX_15_20040001 chrX_20040001 RAL-461 2505 chrX 20133167 20133178 chrX 20133274 20133311 4 126 3.0 2.0 2.5 1.1 144 chrX 20133167 intergenic CG15322 + chrX 20133239 intergenic CG15322 + chrX 20133311 intergenic CG15322 + chrX_4_20130001 chrX_20130001 RAL-461 2506 chrX 20166012 20166042 chrX 20166113 20166143 4 101 2.5 6.5 4.5 0.7 131 chrX 20166012 intergenic Phf7 - chrX 20166078 intergenic Phf7 - chrX 20166143 intergenic Phf7 - chrX_4_20165001 chrX_20165001 RAL-461 2507 chrX 20257762 20257774 chrX 20257868 20257880 5 106 0.5 3.0 1.8 1.8 118 chrX 20257762 intergenic not near genes chrX 20257821 intergenic not near genes chrX 20257880 intergenic not near genes chrX_5_20255001 chrX_20255001 RAL-461 2508 chrX 20271484 20271524 chrX 20271596 20271623 13 110 4.5 0.0 2.2 4.1 139 chrX 20271484 intergenic not near genes chrX 20271554 intergenic not near genes chrX 20271623 intergenic not near genes chrX_13_20270001 chrX_20270001 RAL-461 2509 chrX 20312871 20312905 chrX 20312958 20313003 8 95 3.5 4.5 4.0 1.6 132 chrX 20312871 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20313003 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-461 2510 chrX 20369312 20369325 chrX 20369411 20369429 4 99 0.5 3.5 2.0 1.3 117 chrX 20369312 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369429 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-461 2511 chrX 20369326 20369339 chrX 20369407 20369443 6 100 0.5 3.5 2.0 2.0 117 chrX 20369326 intergenic not near genes chrX 20369384 intergenic not near genes chrX 20369443 intergenic not near genes chrX_6_20365001 chrX_20365001 RAL-461 2512 chrX 20437360 20437392 chrX 20437935 20437965 5 576 3.0 2.0 2.5 1.4 605 chrX 20437360 intron CG1695 + chrX 20437662 intron CG1695 + chrX 20437965 intron CG1695 + chrX_5_20435001 chrX_20435001 RAL-461 2513 chrX 20443171 20443202 chrX 20443250 20443298 4 90 2.0 2.5 2.2 1.2 127 chrX 20443171 exon CG1695 + chrX 20443234 intron CG1695 + chrX 20443298 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-461 2514 chrX 20456639 20456680 chrX 20456761 20456802 11 118 6.0 4.0 5.0 1.8 163 chrX 20456639 intron CG32506 + chrX 20456720 intron CG32506 + chrX 20456802 intron CG32506 + chrX_11_20455001 chrX_20455001 RAL-461 2515 chrX 20467998 20468018 chrX 20468107 20468127 4 108 3.0 0.0 1.5 1.6 129 chrX 20467998 intron GstT3 + chrX 20468062 intron GstT3 + chrX 20468127 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-461 2516 chrX 20493914 20493929 chrX 20494087 20494110 8 174 0.0 7.0 3.5 1.8 196 chrX 20493914 intron RhoGAP19D - chrX 20494012 intron RhoGAP19D - chrX 20494110 intron RhoGAP19D - chrX_8_20490001 chrX_20490001 RAL-461 2517 chrX 20531760 20531794 chrX 20531868 20531913 10 115 1.0 4.5 2.8 2.6 153 chrX 20531760 intergenic not near genes chrX 20531836 intergenic not near genes chrX 20531913 intergenic not near genes chrX_10_20530001 chrX_20530001 RAL-461 2518 chrX 20546552 20546563 chrX 20546732 20546744 4 183 0.0 2.0 1.0 2.0 192 chrX 20546552 intron RunxB + chrX 20546648 intron RunxB + chrX 20546744 intron RunxB + chrX_4_20545001 chrX_20545001 RAL-461 2519 chrX 20570744 20570795 chrX 20570849 20570900 12 100 3.5 5.5 4.5 2.2 156 chrX 20570744 intergenic not near genes chrX 20570822 intergenic not near genes chrX 20570900 intergenic not near genes chrX_12_20570001 chrX_20570001 RAL-461 2520 chrX 20575170 20575187 chrX 20575251 20575255 5 83 1.5 3.5 2.5 1.4 85 chrX 20575170 intergenic CG42580 + chrX 20575212 intergenic not near genes chrX 20575255 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-461 2521 chrX 20635419 20635447 chrX 20635600 20635633 10 182 4.5 3.0 3.8 2.1 214 chrX 20635419 intergenic not near genes chrX 20635526 intergenic not near genes chrX 20635633 intergenic not near genes chrX_10_20635001 chrX_20635001 RAL-461 2522 chrX 20710413 20710440 chrX 20710509 20710537 8 95 0.0 1.5 0.8 4.4 124 chrX 20710413 intergenic not near genes chrX 20710475 intergenic not near genes chrX 20710537 intergenic not near genes chrX_8_20710001 chrX_20710001 RAL-461 2523 chrX 20836713 20836749 chrX 20844329 20844371 roo 7 7618 2.0 4.0 3.0 1.8 7658 chrX 20836713 intron shakB - chrX 20840542 intron shakB - chrX 20844371 intron shakB - chrX_7_20840001 chrX_20840001 RAL-461 2524 chrX 20940718 20940735 chrX 20942195 20942218 hobo 4 1484 3.0 3.5 3.2 1.0 1500 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942218 intergenic not near genes chrX_4_20940001 chrX_20940001 RAL-461 2525 chrX 21029166 21029181 chrX 21029380 21029388 4 216 0.0 5.5 2.8 1.1 222 chrX 21029166 3` UTR CG1529 - chrX 21029277 3` UTR CG1529 - chrX 21029388 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-461 2526 chrX 21055679 21055723 chrX 21055775 21055819 14 94 5.0 5.0 5.0 2.3 140 chrX 21055679 intron bves + chrX 21055749 intron bves + chrX 21055819 intron bves + chrX_14_21055001 chrX_21055001 RAL-461 2527 chrX 21058133 21058173 chrX 21058254 21058295 4 122 2.0 0.0 1.0 2.0 162 chrX 21058133 intron bves + chrX 21058214 intron bves + chrX 21058295 intron bves + chrX_4_21055001 chrX_21055001 RAL-461 2528 chrX 21061858 21061895 chrX 21062363 21062400 roo 9 505 3.0 3.0 3.0 2.2 542 chrX 21061858 intron bves + chrX 21062129 intron bves + chrX 21062400 intron,3` UTR bves +,CG32512 - chrX_9_21060001 chrX_21060001 RAL-461 2529 chrX 21076309 21076358 chrX 21076408 21076457 15 95 2.0 0.5 1.2 6.8 148 chrX 21076309 intron bves + chrX 21076383 intron bves + chrX 21076457 intron bves + chrX_15_21075001 chrX_21075001 RAL-461 2530 chrX 21077575 21077606 chrX 21077684 21077699 6 103 6.5 6.5 6.5 0.8 124 chrX 21077575 intron bves + chrX 21077637 intron bves + chrX 21077699 intron bves + chrX_6_21075001 chrX_21075001 RAL-461 2531 chrX 21078752 21078760 chrX 21078850 21078858 4 97 6.5 0.5 3.5 0.9 106 chrX 21078752 intron bves + chrX 21078805 intron bves + chrX 21078858 intron bves + chrX_4_21075001 chrX_21075001 RAL-461 2532 chrX 21086122 21086162 chrX 21087166 21087211 jockey 16 1046 1.5 4.5 3.0 4.0 1089 chrX 21086122 intergenic not near genes chrX 21086666 intergenic not near genes chrX 21087211 intergenic not near genes chrX_16_21085001 chrX_21085001 RAL-461 2533 chrX 21088021 21088068 chrX 21088173 21088193 9 143 2.5 0.5 1.5 3.6 172 chrX 21088021 intergenic not near genes chrX 21088107 intergenic not near genes chrX 21088193 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-461 2534 chrX 21089136 21089173 chrX 21089250 21089287 18 113 4.0 3.5 3.8 3.8 151 chrX 21089136 intergenic not near genes chrX 21089212 intergenic not near genes chrX 21089287 intergenic not near genes chrX_18_21085001 chrX_21085001 RAL-461 2535 chrX 21166129 21166164 chrX 21166226 21166265 6 95 4.0 3.5 3.8 1.2 136 chrX 21166129 intergenic not near genes chrX 21166197 intergenic not near genes chrX 21166265 intergenic not near genes chrX_6_21165001 chrX_21165001 RAL-461 2536 chrX 21190553 21190565 chrX 21190699 21190741 4 168 3.5 0.0 1.8 1.4 188 chrX 21190553 intergenic not near genes chrX 21190647 intergenic not near genes chrX 21190741 intergenic not near genes chrX_4_21190001 chrX_21190001 RAL-461 2537 chrX 21303178 21303226 chrX 21303288 21303291 9 100 1.5 1.5 1.5 3.6 113 chrX 21303178 intron CG1718 - chrX 21303234 intron CG1718 - chrX 21303291 intron CG1718 - chrX_9_21300001 chrX_21300001 RAL-461 2538 chrX 21328099 21328129 chrX 21328230 21328256 10 129 5.0 3.0 4.0 2.0 157 chrX 21328099 3` UTR CG1486 + chrX 21328178 intergenic CG1486 +,tty - chrX 21328256 intergenic CG1486 +,tty - chrX_10_21325001 chrX_21325001 RAL-461 2539 chrX 21410630 21410669 chrX 21410724 21410768 10 97 0.0 3.0 1.5 4.0 138 chrX 21410630 intergenic CR45003 - chrX 21410699 intergenic CR45003 - chrX 21410768 intergenic CR45003 - chrX_10_21410001 chrX_21410001 RAL-461 2540 chrX 21443442 21443469 chrX 21443640 21443667 5 198 5.0 5.0 5.0 0.8 225 chrX 21443442 intron CG42343 - chrX 21443554 intron CG42343 - chrX 21443667 intron CG42343 - chrX_5_21440001 chrX_21440001 RAL-461 2541 chrX 21455199 21455237 chrX 21455398 21455439 5 204 4.0 0.0 2.0 1.7 240 chrX 21455199 intron CG42343 - chrX 21455319 intron CG42343 - chrX 21455439 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-461 2542 chrX 21458687 21458717 chrX 21464143 21464158 Ivk 8 5454 4.0 7.0 5.5 1.2 5471 chrX 21458687 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464158 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-461 2543 chrX 21492255 21492305 chrX 21492388 21492438 15 132 1.5 5.5 3.5 3.3 183 chrX 21492255 intergenic not near genes chrX 21492346 intergenic not near genes chrX 21492438 intergenic not near genes chrX_15_21490001 chrX_21490001 RAL-461 2544 chrX 21500553 21500567 chrX 21500774 21500788 6 219 1.5 5.5 3.5 1.3 235 chrX 21500553 intron CR45082 - chrX 21500670 intron CR45082 - chrX 21500788 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-461 2545 chrX 21565405 21565441 chrX 21565503 21565539 8 97 2.5 1.0 1.8 2.9 134 chrX 21565405 intergenic not near genes chrX 21565472 intergenic not near genes chrX 21565539 intergenic not near genes chrX_8_21565001 chrX_21565001 RAL-461 2546 chrX 21668249 21668269 chrX 21668354 21668374 6 105 6.5 1.5 4.0 1.2 125 chrX 21668249 intergenic not near genes chrX 21668312 intergenic not near genes chrX 21668374 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-461 2547 chrX 22448251 22448282 chrX 22448408 22448441 11 158 3.0 3.5 3.2 2.6 190 chrX 22448251 intron CG14615 - chrX 22448346 intron CG14615 - chrX 22448441 intron CG14615 - chrX_11_22445001 chrX_22445001 RAL-461 2548 chrX 22478877 22478891 chrX 22479030 22479044 5 152 0.0 7.5 3.8 1.0 167 chrX 22478877 intron CG12576 - chrX 22478960 intron CG12576 - chrX 22479044 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-461 2549 chrX 22522641 22522660 chrX 22525458 22525484 NOF 4 2822 4.5 0.0 2.2 1.2 2843 chrX 22522641 intron CG17600 + chrX 22524062 intron CG17600 + chrX 22525484 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-461 2550 chrX 22620478 22620517 chrX 22626765 22626784 297 9 6285 3.5 3.5 3.5 2.0 6306 chrX 22620478 intron Cda4 - chrX 22623631 intron Cda4 - chrX 22626784 intron Cda4 - chrX_9_22620001 chrX_22620001 RAL-461 2551 chrX 22681470 22681515 chrX 22688946 22688951 HMS-Beagle2 4 7466 0.5 4.0 2.2 1.2 7481 chrX 22681470 intron CR44997 + chrX 22685210 intron CR44997 + chrX 22688951 intron CR44997 + chrX_4_22685001 chrX_22685001 RAL-461 2552 chrX 22697490 22697512 chrX 22701797 22701829 Juan 7 4316 4.0 5.5 4.8 1.2 4339 chrX 22697490 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701829 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-461 2553 chrX 22771488 22771535 chrX 22774796 22774838 297 6 3301 1.5 1.5 1.5 2.4 3350 chrX 22771488 intron CR44997 + chrX 22773163 intron CR44997 + chrX 22774838 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-461 2554 chrX 22784059 22784082 chrX 22784162 22784163 4 98 8.0 5.0 6.5 0.5 104 chrX 22784059 intron CR44997 + chrX 22784111 intron CR44997 + chrX 22784163 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-461 2555 chrX 22797012 22797023 chrX 22797087 22797118 4 90 0.5 3.5 2.0 1.3 106 chrX 22797012 intron CR44997 + chrX 22797065 intron CR44997 + chrX 22797118 intron CR44997 + chrX_4_22795001 chrX_22795001 RAL-461 2556 chrX 22824231 22824444 chrX 22824366 22824597 14 146 3.5 4.5 4.0 2.8 366 chrX 22824231 intergenic fog - chrX 22824414 3` UTR fog - chrX 22824597 3` UTR fog - chrX_14_22820001 chrX_22820001 RAL-461 2557 chrX 22867978 22868008 chrX 22868112 22868116 4 132 1.5 0.5 1.0 2.0 138 chrX 22867978 exon CG42346 + chrX 22868047 intron CG42346 + chrX 22868116 intron CG42346 + chrX_4_22865001 chrX_22865001 RAL-461 2558 chrX 22870877 22870887 chrX 22870967 22870998 6 103 2.5 2.0 2.2 1.9 121 chrX 22870877 intron,3` UTR CG42346 +,CR43656 - chrX 22870938 intron,3` UTR CG42346 +,CR43656 - chrX 22870998 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-461 2559 chrX 22904760 22904808 chrX 22904863 22904901 8 102 1.5 3.0 2.2 2.5 141 chrX 22904760 intergenic not near genes chrX 22904830 intergenic not near genes chrX 22904901 intergenic not near genes chrX_8_22900001 chrX_22900001 RAL-461 2560 chrX 22920355 22920408 chrX 22920460 22920464 10 98 1.5 2.0 1.8 3.6 109 chrX 22920355 intergenic not near genes chrX 22920410 intergenic not near genes chrX 22920464 intergenic not near genes chrX_10_22920001 chrX_22920001 RAL-461 2561 chrX 22922517 22922525 chrX 22922594 22922614 4 90 7.0 1.5 4.2 0.8 97 chrX 22922517 intergenic not near genes chrX 22922566 intergenic not near genes chrX 22922614 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-461 2562 chrX 22922527 22922551 chrX 22922592 22922606 8 81 3.5 1.5 2.5 2.3 79 chrX 22922527 intergenic not near genes chrX 22922566 intergenic not near genes chrX 22922606 intergenic not near genes chrX_8_22920001 chrX_22920001 RAL-461 2563 chrX 22987100 22987134 chrX 22989768 22989812 Burdock 10 2673 3.0 4.0 3.5 2.2 2712 chrX 22987100 intron,intron stnA -,stnB - chrX 22988456 intron,intron stnA -,stnB - chrX 22989812 intron,intron stnA -,stnB - chrX_10_22985001 chrX_22985001 RAL-461 2564 chrX 22996297 22996333 chrX 23003551 23003587 roo 13 7252 2.5 6.0 4.2 2.5 7290 chrX 22996297 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003587 intron,intron stnA -,stnB - chrX_13_22995001 chrX_22995001 RAL-461 2565 chrY 1419890 1419909 chrY 1420164 1420183 7 273 17.5 12.0 14.8 0.4 293 chrY 1419890 intergenic not near genes chrY 1420036 intergenic not near genes chrY 1420183 intergenic not near genes chrY_7_1420001 chrY_1420001 RAL-461 2566 chrY 1420499 1420652 chrY 1420730 1420749 5 124 13.5 15.0 14.2 0.3 250 chrY 1420499 intergenic not near genes chrY 1420624 intergenic not near genes chrY 1420749 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-461 2567 chrY 3664583 3664627 chrY 3664706 3664747 5 113 1.5 2.0 1.8 1.8 164 chrY 3664583 intergenic CG40948 + chrY 3664665 intergenic CG40948 + chrY 3664747 intergenic CG40948 + chrY_5_3660001 chrY_3660001 RAL-461