SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47451 47468 chr2L 52569 52593 jockey 9 5124 12.0 18.5 15.2 0.6 5142 chr2L 47451 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_9_50001 chr2L_50001 RAL-443 2 chr2L 47470 47485 chr2L 52568 52589 jockey 7 5109 11.0 16.5 13.8 0.5 5119 chr2L 47470 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52589 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-443 3 chr2L 91190 91208 chr2L 91254 91287 7 89 24.5 24.5 24.5 0.3 97 chr2L 91190 intergenic not near genes chr2L 91238 intergenic not near genes chr2L 91287 intergenic not near genes chr2L_7_90001 chr2L_90001 RAL-443 4 chr2L 109304 109332 chr2L 109424 109461 5 122 39.0 33.0 36.0 0.1 157 chr2L 109304 intron Sam-S + chr2L 109382 intron Sam-S + chr2L 109461 intron Sam-S + chr2L_5_105001 chr2L_105001 RAL-443 5 chr2L 119717 119754 chr2L 119814 119851 6 97 22.0 18.0 20.0 0.3 134 chr2L 119717 intron,intron CG11455 +,CG4822 - chr2L 119784 intron,intron CG11455 +,CG4822 - chr2L 119851 intron,exon CG11455 +,CG4822 - chr2L_6_115001 chr2L_115001 RAL-443 6 chr2L 163825 163875 chr2L 163931 163981 8 106 15.5 10.5 13.0 0.6 156 chr2L 163825 intron spen + chr2L 163903 intron spen + chr2L 163981 intron spen + chr2L_8_160001 chr2L_160001 RAL-443 7 chr2L 172058 172083 chr2L 172159 172183 5 101 16.5 16.5 16.5 0.3 125 chr2L 172058 intron spen + chr2L 172120 intron spen + chr2L 172183 intron spen + chr2L_5_170001 chr2L_170001 RAL-443 8 chr2L 180280 180323 chr2L 180466 180471 5 174 11.5 9.5 10.5 0.4 191 chr2L 180280 intron spen + chr2L 180376 intron spen + chr2L 180471 intron spen + chr2L_5_180001 chr2L_180001 RAL-443 9 chr2L 263287 263511 chr2L 263446 263610 19 154 13.5 6.0 9.8 1.8 323 chr2L 263287 intron,3` UTR CG3645 -,CG17075 - chr2L 263448 intron,3` UTR CG3645 -,CG17075 - chr2L 263610 intron,3` UTR CG3645 -,CG17075 - chr2L_19_260001 chr2L_260001 RAL-443 10 chr2L 297697 297717 chr2L 297785 297836 5 105 9.0 4.0 6.5 0.7 139 chr2L 297697 intergenic Pi3K21B +,Hop + chr2L 297766 intergenic Pi3K21B +,Hop + chr2L 297836 intergenic Pi3K21B +,Hop + chr2L_5_295001 chr2L_295001 RAL-443 11 chr2L 319885 319936 chr2L 319990 320041 22 101 14.0 18.5 16.2 1.3 156 chr2L 319885 intron Plc21C + chr2L 319963 intron Plc21C + chr2L 320041 intron Plc21C + chr2L_22_315001 chr2L_315001 RAL-443 12 chr2L 321774 321787 chr2L 321878 321891 10 103 14.0 28.0 21.0 0.5 117 chr2L 321774 intron Plc21C + chr2L 321832 intron Plc21C + chr2L 321891 intron Plc21C + chr2L_10_320001 chr2L_320001 RAL-443 13 chr2L 318767 318813 chr2L 323412 323450 11 4640 17.0 33.5 25.2 0.4 4683 chr2L 318767 intron,exon Plc21C +,CG11912 - chr2L 321108 intron,exon Plc21C +,CG11911 - chr2L 323450 intron Plc21C + chr2L_11_320001 chr2L_320001 RAL-443 14 chr2L 347865 347919 chr2L 355385 355439 blood 15 7518 4.0 8.0 6.0 2.1 7574 chr2L 347865 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355439 3` UTR Plc21C + chr2L_15_350001 chr2L_350001 RAL-443 15 chr2L 371428 371454 chr2L 371521 371553 10 96 3.0 7.5 5.2 1.6 125 chr2L 371428 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371553 intergenic not near genes chr2L_10_370001 chr2L_370001 RAL-443 16 chr2L 407944 407967 chr2L 408028 408068 7 98 16.5 16.0 16.2 0.4 124 chr2L 407944 3` UTR RpI135 + chr2L 408006 intergenic AP-2alpha -,RpI135 + chr2L 408068 3` UTR AP-2alpha - chr2L_7_405001 chr2L_405001 RAL-443 17 chr2L 481872 481909 chr2L 482178 482215 4 303 9.0 11.0 10.0 0.4 343 chr2L 481872 intron ush + chr2L 482044 intron ush + chr2L 482215 intron ush + chr2L_4_480001 chr2L_480001 RAL-443 18 chr2L 544637 544857 chr2L 544732 544950 12 100 17.0 5.5 11.2 1.0 313 chr2L 544637 5` UTR Spp - chr2L 544794 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544950 3` UTR Ets21C - chr2L_12_540001 chr2L_540001 RAL-443 19 chr2L 590605 590651 chr2L 590721 590732 4 104 7.5 11.0 9.2 0.4 127 chr2L 590605 intron Gsc - chr2L 590668 intron Gsc - chr2L 590732 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-443 20 chr2L 617290 617333 chr2L 617386 617429 6 96 8.5 5.0 6.8 0.8 139 chr2L 617290 intergenic not near genes chr2L 617360 intergenic not near genes chr2L 617429 intergenic not near genes chr2L_6_615001 chr2L_615001 RAL-443 21 chr2L 749531 749580 chr2L 749628 749677 6 96 9.5 11.5 10.5 0.5 146 chr2L 749531 intergenic GABA-B-R3 + chr2L 749604 intergenic GABA-B-R3 + chr2L 749677 intergenic GABA-B-R3 + chr2L_6_745001 chr2L_745001 RAL-443 22 chr2L 770463 770485 chr2L 772245 772286 Bari1 4 1796 3.5 4.5 4.0 0.8 1823 chr2L 770463 intergenic not near genes chr2L 771374 intergenic not near genes chr2L 772286 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-443 23 chr2L 849456 849486 chr2L 849562 849593 7 108 4.0 9.5 6.8 0.9 137 chr2L 849456 intron drongo - chr2L 849524 intron drongo - chr2L 849593 intron drongo - chr2L_7_845001 chr2L_845001 RAL-443 24 chr2L 877838 877853 chr2L 877934 877954 5 98 10.5 10.5 10.5 0.4 116 chr2L 877838 3` UTR,exon CG15824 -,ninaA + chr2L 877896 3` UTR,intron CG15824 -,ninaA + chr2L 877954 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-443 25 chr2L 922451 922496 chr2L 922551 922591 11 95 3.5 3.5 3.5 2.4 140 chr2L 922451 intergenic CG4341 + chr2L 922521 intergenic CG4341 + chr2L 922591 intergenic CG4341 + chr2L_11_920001 chr2L_920001 RAL-443 26 chr2L 923523 923544 chr2L 923689 923708 5 164 17.0 6.5 11.8 0.4 185 chr2L 923523 intron CG4341 + chr2L 923616 intron CG4341 + chr2L 923708 intron CG4341 + chr2L_5_920001 chr2L_920001 RAL-443 27 chr2L 923521 923542 chr2L 923718 923738 8 188 17.0 16.5 16.8 0.4 217 chr2L 923521 intron CG4341 + chr2L 923630 intron CG4341 + chr2L 923738 intron CG4341 + chr2L_8_920001 chr2L_920001 RAL-443 28 chr2L 928842 928851 chr2L 928938 928948 4 96 5.5 7.5 6.5 0.5 106 chr2L 928842 intron CG4341 + chr2L 928895 intron CG4341 + chr2L 928948 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-443 29 chr2L 931619 931663 chr2L 931718 931762 9 99 15.0 20.0 17.5 0.5 143 chr2L 931619 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931762 intron CG4341 + chr2L_9_930001 chr2L_930001 RAL-443 30 chr2L 947851 947875 chr2L 948014 948026 6 160 4.0 3.0 3.5 1.3 175 chr2L 947851 intron CG4341 + chr2L 947938 intron CG4341 + chr2L 948026 intron CG4341 + chr2L_6_945001 chr2L_945001 RAL-443 31 chr2L 964542 964574 chr2L 964644 964673 12 103 9.0 6.0 7.5 1.4 131 chr2L 964542 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964673 intergenic not near genes chr2L_12_960001 chr2L_960001 RAL-443 32 chr2L 971893 971940 chr2L 972003 972040 4 93 6.0 6.0 6.0 0.6 147 chr2L 971893 intergenic not near genes chr2L 971966 intergenic not near genes chr2L 972040 intergenic not near genes chr2L_4_970001 chr2L_970001 RAL-443 33 chr2L 976857 976913 chr2L 984513 984569 roo 17 7654 4.5 3.5 4.0 3.4 7712 chr2L 976857 intergenic not near genes chr2L 980713 intergenic not near genes chr2L 984569 intergenic not near genes chr2L_17_980001 chr2L_980001 RAL-443 34 chr2L 996704 996749 chr2L 1005819 1005864 roo 9 9114 6.0 6.5 6.2 1.2 9160 chr2L 996704 intergenic not near genes chr2L 1001284 intergenic not near genes chr2L 1005864 intergenic not near genes chr2L_9_1000001 chr2L_1000001 RAL-443 35 chr2L 1035544 1035584 chr2L 1035634 1035681 8 96 7.0 5.5 6.2 1.1 137 chr2L 1035544 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035681 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-443 36 chr2L 1042583 1042605 chr2L 1042694 1042711 8 110 17.0 19.5 18.2 0.4 128 chr2L 1042583 intron IA-2 - chr2L 1042647 intron IA-2 - chr2L 1042711 intron IA-2 - chr2L_8_1040001 chr2L_1040001 RAL-443 37 chr2L 1090366 1090376 chr2L 1090476 1090486 5 109 12.0 19.0 15.5 0.3 120 chr2L 1090366 intron CG4629 - chr2L 1090426 intron CG4629 - chr2L 1090486 intron CG4629 - chr2L_5_1090001 chr2L_1090001 RAL-443 38 chr2L 1156845 1156891 chr2L 1156970 1157016 5 123 14.0 16.5 15.2 0.3 171 chr2L 1156845 intron capt - chr2L 1156930 intron capt - chr2L 1157016 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-443 39 chr2L 1196807 1196834 chr2L 1196908 1196909 6 97 9.0 7.5 8.2 0.7 102 chr2L 1196807 3` UTR CG5001 + chr2L 1196858 intergenic CG5001 + chr2L 1196909 intergenic CG5001 + chr2L_6_1195001 chr2L_1195001 RAL-443 40 chr2L 1199853 1199865 chr2L 1199981 1199993 4 126 13.5 27.0 20.2 0.2 140 chr2L 1199853 3` UTR CG43348 + chr2L 1199923 3` UTR CG43348 + chr2L 1199993 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-443 41 chr2L 1220109 1220120 chr2L 1227595 1227606 blood 10 7485 12.5 5.5 9.0 1.0 7497 chr2L 1220109 intron CG42329 + chr2L 1223858 intron CG42329 + chr2L 1227606 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-443 42 chr2L 1220127 1220161 chr2L 1227593 1227647 blood 10 7478 3.0 5.0 4.0 2.0 7520 chr2L 1220127 intron CG42329 + chr2L 1223887 intron CG42329 + chr2L 1227647 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-443 43 chr2L 1244418 1244433 chr2L 1244515 1244530 4 97 15.5 20.0 17.8 0.2 112 chr2L 1244418 intergenic not near genes chr2L 1244474 intergenic not near genes chr2L 1244530 intergenic not near genes chr2L_4_1240001 chr2L_1240001 RAL-443 44 chr2L 1261136 1261257 chr2L 1261238 1261339 15 96 2.5 8.5 5.5 2.3 203 chr2L 1261136 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261339 intron robo3 + chr2L_15_1260001 chr2L_1260001 RAL-443 45 chr2L 1272422 1272440 chr2L 1272532 1272550 6 110 18.5 20.0 19.2 0.3 128 chr2L 1272422 intron robo3 + chr2L 1272486 intron robo3 + chr2L 1272550 intron robo3 + chr2L_6_1270001 chr2L_1270001 RAL-443 46 chr2L 1322021 1322037 chr2L 1322112 1322146 5 105 13.0 7.0 10.0 0.5 125 chr2L 1322021 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322146 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-443 47 chr2L 1459840 1459878 chr2L 1459966 1459999 4 121 7.5 10.5 9.0 0.4 159 chr2L 1459840 intergenic not near genes chr2L 1459920 intergenic not near genes chr2L 1459999 intergenic not near genes chr2L_4_1455001 chr2L_1455001 RAL-443 48 chr2L 1464148 1464175 chr2L 1464395 1464427 7 248 14.5 8.0 11.2 0.6 279 chr2L 1464148 intergenic not near genes chr2L 1464288 intergenic not near genes chr2L 1464427 intergenic not near genes chr2L_7_1460001 chr2L_1460001 RAL-443 49 chr2L 1503405 1503453 chr2L 1503503 1503551 13 97 16.0 16.0 16.0 0.8 146 chr2L 1503405 intron CR44064 + chr2L 1503478 intron CR44064 + chr2L 1503551 intron CR44064 + chr2L_13_1500001 chr2L_1500001 RAL-443 50 chr2L 1511958 1512006 chr2L 1512076 1512124 7 118 9.5 14.5 12.0 0.5 166 chr2L 1511958 intergenic not near genes chr2L 1512041 intergenic not near genes chr2L 1512124 intergenic not near genes chr2L_7_1510001 chr2L_1510001 RAL-443 51 chr2L 1539832 1539877 chr2L 1539945 1539990 15 112 20.0 18.0 19.0 0.8 158 chr2L 1539832 intergenic not near genes chr2L 1539911 intergenic not near genes chr2L 1539990 intergenic not near genes chr2L_15_1535001 chr2L_1535001 RAL-443 52 chr2L 1570681 1570700 chr2L 1573573 1573592 F-element 7 2891 5.5 1.5 3.5 1.6 2911 chr2L 1570681 intron haf + chr2L 1572136 intron haf + chr2L 1573592 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-443 53 chr2L 1570701 1570715 chr2L 1573568 1573607 F-element 6 2888 4.5 1.5 3.0 1.5 2906 chr2L 1570701 intron haf + chr2L 1572154 intron haf + chr2L 1573607 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-443 54 chr2L 1591868 1591894 chr2L 1591955 1591998 4 100 7.0 15.0 11.0 0.3 130 chr2L 1591868 intron haf + chr2L 1591933 intron haf + chr2L 1591998 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-443 55 chr2L 1620268 1620285 chr2L 1620364 1620381 6 93 7.5 16.0 11.8 0.5 113 chr2L 1620268 3` UTR CR44603 - chr2L 1620324 3` UTR CR44603 - chr2L 1620381 3` UTR CR44603 - chr2L_6_1620001 chr2L_1620001 RAL-443 56 chr2L 1678955 1679010 chr2L 1686440 1686450 blood 22 7479 4.0 4.5 4.2 4.2 7495 chr2L 1678955 intron chinmo + chr2L 1682702 intron chinmo + chr2L 1686450 intron chinmo + chr2L_22_1680001 chr2L_1680001 RAL-443 57 chr2L 1711339 1711381 chr2L 1711683 1711724 mdg3 5 339 3.5 2.5 3.0 1.2 385 chr2L 1711339 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711724 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-443 58 chr2L 1721826 1721854 chr2L 1721915 1721945 5 97 11.5 16.0 13.8 0.3 119 chr2L 1721826 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721945 intron Rim2 - chr2L_5_1720001 chr2L_1720001 RAL-443 59 chr2L 1842295 1842317 chr2L 1842391 1842413 7 96 14.5 15.0 14.8 0.4 118 chr2L 1842295 intron wry + chr2L 1842354 intron wry + chr2L 1842413 intron wry + chr2L_7_1840001 chr2L_1840001 RAL-443 60 chr2L 1883346 1883390 chr2L 1883495 1883539 5 147 4.0 1.5 2.8 1.3 193 chr2L 1883346 intron CG15358 - chr2L 1883442 intron CG15358 - chr2L 1883539 intron CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-443 61 chr2L 1883405 1883443 chr2L 1884007 1884043 5 602 1.5 18.0 9.8 0.5 638 chr2L 1883405 intron CG15358 - chr2L 1883724 intron CG15358 - chr2L 1884043 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-443 62 chr2L 1905064 1905100 chr2L 1905187 1905223 9 123 7.5 6.0 6.8 1.2 159 chr2L 1905064 intron CG7337 + chr2L 1905144 intron CG7337 + chr2L 1905223 intron CG7337 + chr2L_9_1905001 chr2L_1905001 RAL-443 63 chr2L 1925473 1925499 chr2L 1925570 1925596 4 97 13.5 15.5 14.5 0.3 123 chr2L 1925473 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925596 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-443 64 chr2L 1948608 1948629 chr2L 1948735 1948743 8 125 0.0 1.5 0.8 4.4 135 chr2L 1948608 intergenic not near genes chr2L 1948676 intergenic not near genes chr2L 1948743 intergenic not near genes chr2L_8_1945001 chr2L_1945001 RAL-443 65 chr2L 1958749 1958772 chr2L 1958846 1958869 4 95 4.5 6.5 5.5 0.6 120 chr2L 1958749 intron erm - chr2L 1958809 intron erm - chr2L 1958869 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-443 66 chr2L 1993200 1993204 chr2L 1993291 1993292 4 92 18.0 14.0 16.0 0.2 92 chr2L 1993200 intergenic not near genes chr2L 1993246 intergenic not near genes chr2L 1993292 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-443 67 chr2L 2046305 2046357 chr2L 2046402 2046424 10 80 11.5 9.5 10.5 0.9 119 chr2L 2046305 intron Kebab + chr2L 2046364 intron Kebab + chr2L 2046424 intron Kebab + chr2L_10_2045001 chr2L_2045001 RAL-443 68 chr2L 2100375 2100380 chr2L 2109540 2109545 roo 4 9167 13.0 4.5 8.8 0.4 9170 chr2L 2100375 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109545 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-443 69 chr2L 2100394 2100406 chr2L 2109525 2109562 roo 8 9147 8.0 3.0 5.5 1.2 9168 chr2L 2100394 intron dpr3 - chr2L 2104978 intron dpr3 - chr2L 2109562 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-443 70 chr2L 2112118 2112146 chr2L 2119777 2119812 opus 9 7674 0.5 2.5 1.5 3.6 7694 chr2L 2112118 intergenic not near genes chr2L 2115965 intergenic not near genes chr2L 2119812 intergenic not near genes chr2L_9_2115001 chr2L_2115001 RAL-443 71 chr2L 2186282 2186321 chr2L 2186396 2186430 8 109 20.5 17.0 18.8 0.4 148 chr2L 2186282 intergenic not near genes chr2L 2186356 intergenic not near genes chr2L 2186430 intergenic not near genes chr2L_8_2185001 chr2L_2185001 RAL-443 72 chr2L 2311053 2311067 chr2L 2311169 2311183 4 116 5.5 4.0 4.8 0.7 130 chr2L 2311053 intron CG9967 - chr2L 2311118 intron CG9967 - chr2L 2311183 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-443 73 chr2L 2311070 2311091 chr2L 2311166 2311205 8 112 3.0 3.5 3.2 1.9 135 chr2L 2311070 intron CG9967 - chr2L 2311138 intron CG9967 - chr2L 2311205 intron CG9967 - chr2L_8_2310001 chr2L_2310001 RAL-443 74 chr2L 2341496 2341519 chr2L 2341726 2341748 4 237 14.0 13.5 13.8 0.3 252 chr2L 2341496 intron,intron CG9967 -,eys + chr2L 2341622 intron,intron CG9967 -,eys + chr2L 2341748 intron,intron CG9967 -,eys + chr2L_4_2340001 chr2L_2340001 RAL-443 75 chr2L 2427362 2427401 chr2L 2427468 2427507 10 105 0.5 4.0 2.2 3.1 145 chr2L 2427362 3` UTR CR44912 - chr2L 2427434 3` UTR CR44912 - chr2L 2427507 3` UTR CR44912 - chr2L_10_2425001 chr2L_2425001 RAL-443 76 chr2L 2475671 2475696 chr2L 2475760 2475791 7 99 7.0 11.0 9.0 0.7 120 chr2L 2475671 intergenic not near genes chr2L 2475731 intergenic not near genes chr2L 2475791 intergenic not near genes chr2L_7_2475001 chr2L_2475001 RAL-443 77 chr2L 2531200 2531222 chr2L 2531333 2531343 4 126 5.5 11.0 8.2 0.4 143 chr2L 2531200 intergenic not near genes chr2L 2531272 intergenic not near genes chr2L 2531343 intergenic not near genes chr2L_4_2530001 chr2L_2530001 RAL-443 78 chr2L 2541433 2541460 chr2L 2541535 2541558 9 102 12.5 9.0 10.8 0.8 125 chr2L 2541433 intergenic not near genes chr2L 2541496 intergenic not near genes chr2L 2541558 intergenic not near genes chr2L_9_2540001 chr2L_2540001 RAL-443 79 chr2L 2544508 2544552 chr2L 2544632 2544671 8 121 6.0 15.0 10.5 0.7 163 chr2L 2544508 intergenic not near genes chr2L 2544590 intergenic not near genes chr2L 2544671 intergenic not near genes chr2L_8_2540001 chr2L_2540001 RAL-443 80 chr2L 2552726 2552762 chr2L 2552825 2552859 8 98 9.5 13.5 11.5 0.6 133 chr2L 2552726 exon CG3515 - chr2L 2552792 5` UTR CG3515 - chr2L 2552859 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-443 81 chr2L 2565529 2565563 chr2L 2571617 2571640 297 12 6088 3.0 7.5 5.2 1.9 6111 chr2L 2565529 exon Cyp309a2 - chr2L 2568584 intron Cyp309a2 - chr2L 2571640 intron Cyp309a2 - chr2L_12_2565001 chr2L_2565001 RAL-443 82 chr2L 2618030 2618048 chr2L 2618129 2618147 4 99 6.0 8.5 7.2 0.5 117 chr2L 2618030 intergenic not near genes chr2L 2618088 intergenic not near genes chr2L 2618147 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-443 83 chr2L 2634516 2634551 chr2L 2634636 2634671 6 120 10.0 7.0 8.5 0.6 155 chr2L 2634516 intergenic not near genes chr2L 2634594 intergenic not near genes chr2L 2634671 intergenic not near genes chr2L_6_2630001 chr2L_2630001 RAL-443 84 chr2L 2653861 2653880 chr2L 2653965 2653967 4 100 9.5 1.5 5.5 0.6 106 chr2L 2653861 3` UTR Prosbeta4R1 + chr2L 2653914 3` UTR Prosbeta4R1 + chr2L 2653967 intergenic Prosbeta4R1 +,Or23a + chr2L_4_2650001 chr2L_2650001 RAL-443 85 chr2L 2653059 2653107 chr2L 2654662 2654710 7 1603 29.5 37.5 33.5 0.2 1651 chr2L 2653059 5` UTR Prosbeta4R1 + chr2L 2653884 3` UTR Prosbeta4R1 + chr2L 2654710 exon Or23a + chr2L_7_2650001 chr2L_2650001 RAL-443 86 chr2L 2661220 2661234 chr2L 2663038 2663055 I-element 9 1825 3.5 0.0 1.8 3.2 1835 chr2L 2661220 intergenic not near genes chr2L 2662138 intergenic not near genes chr2L 2663055 intergenic not near genes chr2L_9_2660001 chr2L_2660001 RAL-443 87 chr2L 2692310 2692359 chr2L 2692411 2692460 13 96 6.5 10.5 8.5 1.4 150 chr2L 2692310 intron CG31690 + chr2L 2692385 intron CG31690 + chr2L 2692460 intron CG31690 + chr2L_13_2690001 chr2L_2690001 RAL-443 88 chr2L 2703223 2703440 chr2L 2703317 2703544 12 99 5.5 16.5 11.0 1.0 321 chr2L 2703223 intron CG31690 + chr2L 2703384 intron CG31690 + chr2L 2703544 intron CG31690 + chr2L_12_2700001 chr2L_2700001 RAL-443 89 chr2L 2713498 2713526 chr2L 2713617 2713645 6 119 13.5 6.5 10.0 0.5 147 chr2L 2713498 intron CG31690 + chr2L 2713572 intron CG31690 + chr2L 2713645 intron CG31690 + chr2L_6_2710001 chr2L_2710001 RAL-443 90 chr2L 2734488 2734533 chr2L 2734584 2734630 4 96 15.5 14.5 15.0 0.2 142 chr2L 2734488 intron CG31689 + chr2L 2734559 intron CG31689 + chr2L 2734630 intron CG31689 + chr2L_4_2730001 chr2L_2730001 RAL-443 91 chr2L 2772600 2772625 chr2L 2779194 2779208 297 6 6594 3.5 6.0 4.8 1.0 6608 chr2L 2772600 3` UTR Syt1 - chr2L 2775904 intron Syt1 - chr2L 2779208 3` UTR Syt1 - chr2L_6_2775001 chr2L_2775001 RAL-443 92 chr2L 2804248 2804274 chr2L 2804328 2804343 7 94 17.0 18.0 17.5 0.4 95 chr2L 2804248 intergenic not near genes chr2L 2804296 intergenic not near genes chr2L 2804343 intergenic not near genes chr2L_7_2800001 chr2L_2800001 RAL-443 93 chr2L 2909889 2909931 chr2L 2909993 2910004 7 93 11.5 8.5 10.0 0.6 115 chr2L 2909889 intron lilli + chr2L 2909946 intron lilli + chr2L 2910004 intron lilli + chr2L_7_2905001 chr2L_2905001 RAL-443 94 chr2L 2937398 2937447 chr2L 2937495 2937544 23 94 6.5 2.5 4.5 4.2 146 chr2L 2937398 intron lilli + chr2L 2937471 intron lilli + chr2L 2937544 intron lilli + chr2L_23_2935001 chr2L_2935001 RAL-443 95 chr2L 3072994 3073006 chr2L 3078236 3078249 copia 8 5242 9.5 3.0 6.2 1.1 5255 chr2L 3072994 intron toc - chr2L 3075622 intron toc - chr2L 3078249 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-443 96 chr2L 3073010 3073061 chr2L 3078233 3078274 copia 20 5222 3.0 2.5 2.8 5.3 5264 chr2L 3073010 intron toc - chr2L 3075642 intron toc - chr2L 3078274 intron toc - chr2L_20_3075001 chr2L_3075001 RAL-443 97 chr2L 3078512 3078536 chr2L 3078794 3078829 5 293 8.5 7.5 8.0 0.6 317 chr2L 3078512 intron toc - chr2L 3078670 intron toc - chr2L 3078829 intron toc - chr2L_5_3075001 chr2L_3075001 RAL-443 98 chr2L 3108850 3108895 chr2L 3108947 3108958 11 93 7.0 3.5 5.2 1.8 108 chr2L 3108850 exon toc - chr2L 3108904 intron toc - chr2L 3108958 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-443 99 chr2L 3134931 3134953 chr2L 3135028 3135050 9 96 18.0 14.5 16.2 0.5 119 chr2L 3134931 intron toc - chr2L 3134990 intron toc - chr2L 3135050 intron toc - chr2L_9_3130001 chr2L_3130001 RAL-443 100 chr2L 3192197 3192220 chr2L 3192327 3192337 11 129 4.5 4.5 4.5 2.0 140 chr2L 3192197 exon CG34393 - chr2L 3192267 intron CG34393 - chr2L 3192337 intron CG34393 - chr2L_11_3190001 chr2L_3190001 RAL-443 101 chr2L 3192223 3192238 chr2L 3192326 3192369 10 121 1.5 4.5 3.0 2.5 146 chr2L 3192223 intron CG34393 - chr2L 3192296 intron CG34393 - chr2L 3192369 intron CG34393 - chr2L_10_3190001 chr2L_3190001 RAL-443 102 chr2L 3233631 3233659 chr2L 3233797 3233825 6 169 1.5 3.0 2.2 1.9 194 chr2L 3233631 intergenic not near genes chr2L 3233728 intergenic not near genes chr2L 3233825 intergenic not near genes chr2L_6_3230001 chr2L_3230001 RAL-443 103 chr2L 3251474 3251526 chr2L 3259059 3259098 springer 14 7583 3.0 6.5 4.8 2.4 7624 chr2L 3251474 intergenic not near genes chr2L 3255286 intergenic not near genes chr2L 3259098 intergenic not near genes chr2L_14_3255001 chr2L_3255001 RAL-443 104 chr2L 3265533 3265583 chr2L 3265650 3265701 4 111 7.0 9.0 8.0 0.4 168 chr2L 3265533 3` UTR CR45706 - chr2L 3265617 3` UTR CR45706 - chr2L 3265701 3` UTR CR45706 - chr2L_4_3265001 chr2L_3265001 RAL-443 105 chr2L 3272950 3273048 chr2L 3273046 3273154 4 98 4.0 3.0 3.5 0.9 204 chr2L 3272950 intergenic not near genes chr2L 3273052 intergenic not near genes chr2L 3273154 intergenic not near genes chr2L_4_3270001 chr2L_3270001 RAL-443 106 chr2L 3291221 3291268 chr2L 3291316 3291345 13 93 4.5 4.0 4.2 2.5 124 chr2L 3291221 intergenic CG9664 - chr2L 3291283 3` UTR CG9664 - chr2L 3291345 3` UTR CG9664 - chr2L_13_3290001 chr2L_3290001 RAL-443 107 chr2L 3366996 3367039 chr2L 3367166 3367199 11 165 6.0 10.0 8.0 1.2 203 chr2L 3366996 intron CG34394 - chr2L 3367098 intron CG34394 - chr2L 3367199 intron CG34394 - chr2L_11_3365001 chr2L_3365001 RAL-443 108 chr2L 3379730 3379759 chr2L 3379859 3379875 4 126 10.5 11.0 10.8 0.3 145 chr2L 3379730 intergenic not near genes chr2L 3379802 intergenic not near genes chr2L 3379875 intergenic not near genes chr2L_4_3375001 chr2L_3375001 RAL-443 109 chr2L 3388582 3388624 chr2L 3388843 3388882 pogo 16 259 3.0 5.5 4.2 3.1 300 chr2L 3388582 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388882 intergenic CG42460 -,CR44791 + chr2L_16_3385001 chr2L_3385001 RAL-443 110 chr2L 3393536 3393577 chr2L 3393667 3393704 10 130 15.0 15.5 15.2 0.6 168 chr2L 3393536 intergenic not near genes chr2L 3393620 intergenic not near genes chr2L 3393704 intergenic not near genes chr2L_10_3390001 chr2L_3390001 RAL-443 111 chr2L 3426387 3426441 chr2L 3426520 3426574 12 131 14.5 15.0 14.8 0.8 187 chr2L 3426387 intron pgant2 - chr2L 3426480 intron pgant2 - chr2L 3426574 5` UTR pgant2 - chr2L_12_3425001 chr2L_3425001 RAL-443 112 chr2L 3467507 3467558 chr2L 3467632 3467699 9 128 3.0 0.0 1.5 3.6 192 chr2L 3467507 3` UTR CG3238 - chr2L 3467603 3` UTR CG3238 - chr2L 3467699 3` UTR CG3238 - chr2L_9_3465001 chr2L_3465001 RAL-443 113 chr2L 3486080 3486098 chr2L 3486194 3486212 4 114 7.5 13.5 10.5 0.3 132 chr2L 3486080 intron CG15414 - chr2L 3486146 intron CG15414 - chr2L 3486212 intron CG15414 - chr2L_4_3485001 chr2L_3485001 RAL-443 114 chr2L 3490397 3490403 chr2L 3490663 3490669 4 264 9.5 21.0 15.2 0.2 272 chr2L 3490397 intron CG15414 - chr2L 3490533 intron CG15414 - chr2L 3490669 intron CG15414 - chr2L_4_3490001 chr2L_3490001 RAL-443 115 chr2L 3498719 3498748 chr2L 3498816 3498845 5 96 16.5 22.5 19.5 0.2 126 chr2L 3498719 intron tim - chr2L 3498782 intron tim - chr2L 3498845 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-443 116 chr2L 3505426 3505461 chr2L 3505543 3505552 5 110 11.0 10.0 10.5 0.4 126 chr2L 3505426 intron tim - chr2L 3505489 intron tim - chr2L 3505552 intron tim - chr2L_5_3505001 chr2L_3505001 RAL-443 117 chr2L 3508356 3508371 chr2L 3508454 3508469 8 98 0.0 10.5 5.2 1.3 113 chr2L 3508356 intergenic tim -,CR45299 + chr2L 3508412 intergenic CR45299 +,tim - chr2L 3508469 intergenic CR45299 +,tim - chr2L_8_3505001 chr2L_3505001 RAL-443 118 chr2L 3535454 3535500 chr2L 3535554 3535587 6 98 11.0 13.0 12.0 0.5 133 chr2L 3535454 intergenic not near genes chr2L 3535520 intergenic not near genes chr2L 3535587 intergenic not near genes chr2L_6_3535001 chr2L_3535001 RAL-443 119 chr2L 3632263 3632275 chr2L 3632345 3632372 6 93 15.5 22.0 18.8 0.3 109 chr2L 3632263 intron for - chr2L 3632318 intron for - chr2L 3632372 intron for - chr2L_6_3630001 chr2L_3630001 RAL-443 120 chr2L 3634086 3634134 chr2L 3634188 3634236 15 101 11.5 13.5 12.5 1.1 150 chr2L 3634086 intron for - chr2L 3634161 intron for - chr2L 3634236 intron for - chr2L_15_3630001 chr2L_3630001 RAL-443 121 chr2L 3649766 3649817 chr2L 3654988 3655020 copia 21 5216 3.0 4.0 3.5 4.7 5254 chr2L 3649766 intron for - chr2L 3652393 intron for - chr2L 3655020 intron for - chr2L_21_3650001 chr2L_3650001 RAL-443 122 chr2L 3663294 3663333 chr2L 3663393 3663410 14 97 4.5 4.5 4.5 2.5 116 chr2L 3663294 5` UTR CG34340 + chr2L 3663352 intron CG34340 + chr2L 3663410 intron CG34340 + chr2L_14_3660001 chr2L_3660001 RAL-443 123 chr2L 3667949 3668066 chr2L 3668050 3668162 7 102 13.5 12.5 13.0 0.5 213 chr2L 3667949 intron CG34340 + chr2L 3668056 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668162 intron,exon CG34340 +,Sfp24Ba - chr2L_7_3665001 chr2L_3665001 RAL-443 124 chr2L 3686040 3686055 chr2L 3686132 3686157 4 102 16.5 21.5 19.0 0.2 117 chr2L 3686040 intron CG34340 + chr2L 3686098 intron CG34340 + chr2L 3686157 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-443 125 chr2L 3702904 3702931 chr2L 3702988 3703037 5 92 2.0 4.5 3.2 1.2 133 chr2L 3702904 5` UTR CR44311 + chr2L 3702970 intergenic CR44311 + chr2L 3703037 intergenic CR44311 + chr2L_5_3700001 chr2L_3700001 RAL-443 126 chr2L 3735810 3735837 chr2L 3736038 3736065 6 226 16.5 3.0 9.8 0.6 255 chr2L 3735810 intron CG10019 + chr2L 3735938 intron CG10019 + chr2L 3736065 intron CG10019 + chr2L_6_3735001 chr2L_3735001 RAL-443 127 chr2L 3784785 3784811 chr2L 3785664 3785668 11 875 29.5 15.0 22.2 0.5 883 chr2L 3784785 intergenic CG31960 + chr2L 3785226 exon CG31960 + chr2L 3785668 intergenic CG31960 +,CG31958 + chr2L_11_3785001 chr2L_3785001 RAL-443 128 chr2L 3784701 3784722 chr2L 3785628 3785638 4 921 32.5 17.5 25.0 0.2 937 chr2L 3784701 intergenic CG31960 + chr2L 3785170 exon CG31960 + chr2L 3785638 intergenic CG31960 +,CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-443 129 chr2L 3819610 3819626 chr2L 3819706 3819722 8 94 17.5 15.5 16.5 0.5 112 chr2L 3819610 intergenic not near genes chr2L 3819666 intergenic not near genes chr2L 3819722 intergenic not near genes chr2L_8_3815001 chr2L_3815001 RAL-443 130 chr2L 3831823 3831862 chr2L 3831918 3831963 11 98 8.5 13.5 11.0 0.9 140 chr2L 3831823 intergenic not near genes chr2L 3831893 intergenic not near genes chr2L 3831963 intergenic not near genes chr2L_11_3830001 chr2L_3830001 RAL-443 131 chr2L 3896297 3896323 chr2L 3896396 3896413 5 97 14.5 15.0 14.8 0.3 116 chr2L 3896297 intron capu - chr2L 3896355 intron capu - chr2L 3896413 intron capu - chr2L_5_3895001 chr2L_3895001 RAL-443 132 chr2L 3936636 3936656 chr2L 3936735 3936741 6 97 3.5 7.5 5.5 0.9 105 chr2L 3936636 intron fred - chr2L 3936688 intron fred - chr2L 3936741 intron fred - chr2L_6_3935001 chr2L_3935001 RAL-443 133 chr2L 3943775 3943827 chr2L 3943886 3943938 6 111 9.5 15.0 12.2 0.5 163 chr2L 3943775 intron fred - chr2L 3943856 intron fred - chr2L 3943938 intron fred - chr2L_6_3940001 chr2L_3940001 RAL-443 134 chr2L 3948043 3948075 chr2L 3948144 3948183 7 101 11.0 12.5 11.8 0.5 140 chr2L 3948043 intron fred - chr2L 3948113 intron fred - chr2L 3948183 intron fred - chr2L_7_3945001 chr2L_3945001 RAL-443 135 chr2L 3952102 3952150 chr2L 3952250 3952272 6 138 12.5 10.5 11.5 0.5 170 chr2L 3952102 intron fred - chr2L 3952187 intron fred - chr2L 3952272 intron fred - chr2L_6_3950001 chr2L_3950001 RAL-443 136 chr2L 3959154 3959206 chr2L 3959250 3959297 13 94 14.5 11.0 12.8 0.9 143 chr2L 3959154 intron fred - chr2L 3959226 intron fred - chr2L 3959297 intron fred - chr2L_13_3955001 chr2L_3955001 RAL-443 137 chr2L 3975902 3975928 chr2L 3975992 3976022 8 98 6.5 11.0 8.8 0.8 120 chr2L 3975902 intron fred - chr2L 3975962 intron fred - chr2L 3976022 intron fred - chr2L_8_3975001 chr2L_3975001 RAL-443 138 chr2L 3985972 3985985 chr2L 3986070 3986083 4 98 11.0 12.5 11.8 0.3 111 chr2L 3985972 intron fred - chr2L 3986028 intron fred - chr2L 3986083 intron fred - chr2L_4_3985001 chr2L_3985001 RAL-443 139 chr2L 3999162 3999210 chr2L 3999265 3999312 8 97 7.5 9.0 8.2 0.9 150 chr2L 3999162 intergenic not near genes chr2L 3999237 intergenic not near genes chr2L 3999312 intergenic not near genes chr2L_8_3995001 chr2L_3995001 RAL-443 140 chr2L 4037782 4037809 chr2L 4037889 4037916 11 106 4.5 5.5 5.0 1.8 134 chr2L 4037782 intron ed + chr2L 4037849 intron ed + chr2L 4037916 intron ed + chr2L_11_4035001 chr2L_4035001 RAL-443 141 chr2L 4048883 4048894 chr2L 4048993 4049004 4 110 16.5 20.5 18.5 0.2 121 chr2L 4048883 intron ed + chr2L 4048944 intron ed + chr2L 4049004 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-443 142 chr2L 4048896 4048921 chr2L 4048981 4049030 7 94 18.5 21.5 20.0 0.3 134 chr2L 4048896 intron ed + chr2L 4048963 intron ed + chr2L 4049030 intron ed + chr2L_7_4045001 chr2L_4045001 RAL-443 143 chr2L 4054537 4054574 chr2L 4054646 4054683 6 109 1.5 3.0 2.2 1.9 146 chr2L 4054537 intron ed + chr2L 4054610 intron ed + chr2L 4054683 intron ed + chr2L_6_4050001 chr2L_4050001 RAL-443 144 chr2L 4066030 4066057 chr2L 4068875 4068902 Juan 6 2841 5.5 5.5 5.5 0.9 2872 chr2L 4066030 intron ed + chr2L 4067466 intron ed + chr2L 4068902 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-443 145 chr2L 4166356 4166410 chr2L 4166459 4166513 12 98 11.5 9.5 10.5 1.0 157 chr2L 4166356 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166513 intergenic Or24a - chr2L_12_4165001 chr2L_4165001 RAL-443 146 chr2L 4184455 4184507 chr2L 4184794 4184846 12 334 0.0 5.5 2.8 3.2 391 chr2L 4184455 intergenic not near genes chr2L 4184650 intergenic not near genes chr2L 4184846 intergenic not near genes chr2L_12_4180001 chr2L_4180001 RAL-443 147 chr2L 4218298 4218349 chr2L 4218396 4218446 7 93 9.0 9.5 9.2 0.7 148 chr2L 4218298 intron ft - chr2L 4218372 intron ft - chr2L 4218446 intron ft - chr2L_7_4215001 chr2L_4215001 RAL-443 148 chr2L 4293907 4294011 chr2L 4294004 4294090 15 87 6.5 6.0 6.2 2.1 183 chr2L 4293907 intron tutl + chr2L 4293998 intron tutl + chr2L 4294090 intron tutl + chr2L_15_4290001 chr2L_4290001 RAL-443 149 chr2L 4313826 4313833 chr2L 4313919 4313931 4 97 17.5 32.0 24.8 0.2 105 chr2L 4313826 intron tutl + chr2L 4313878 intron tutl + chr2L 4313931 intron tutl + chr2L_4_4310001 chr2L_4310001 RAL-443 150 chr2L 4345474 4345512 chr2L 4345569 4345605 5 96 13.5 15.0 14.2 0.3 131 chr2L 4345474 3` UTR Atet + chr2L 4345540 3` UTR Atet + chr2L 4345605 3` UTR Atet + chr2L_5_4345001 chr2L_4345001 RAL-443 151 chr2L 4351457 4351499 chr2L 4351548 4351595 12 92 4.5 5.0 4.8 2.1 138 chr2L 4351457 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351595 intergenic CR44700 + chr2L_12_4350001 chr2L_4350001 RAL-443 152 chr2L 4434510 4434550 chr2L 4434636 4434687 5 133 4.5 5.5 5.0 0.8 177 chr2L 4434510 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L 4434598 intron,intron,intron CG15431 -,CG34177 +,CG34178 + chr2L 4434687 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L_5_4430001 chr2L_4430001 RAL-443 153 chr2L 4450560 4450574 chr2L 4450647 4450671 9 94 25.0 14.5 19.8 0.4 111 chr2L 4450560 intron CG15439 - chr2L 4450616 intron CG15439 - chr2L 4450671 intron CG15439 - chr2L_9_4450001 chr2L_4450001 RAL-443 154 chr2L 4586969 4586992 chr2L 4587056 4587104 10 108 18.5 15.5 17.0 0.6 135 chr2L 4586969 intron dp - chr2L 4587036 intron dp - chr2L 4587104 intron dp - chr2L_10_4585001 chr2L_4585001 RAL-443 155 chr2L 4595851 4595893 chr2L 4595955 4596003 9 106 16.5 9.0 12.8 0.7 152 chr2L 4595851 intron dp - chr2L 4595927 intron dp - chr2L 4596003 intron dp - chr2L_9_4595001 chr2L_4595001 RAL-443 156 chr2L 4601687 4601737 chr2L 4609148 4609198 mdg1 16 7460 4.0 6.5 5.2 2.6 7511 chr2L 4601687 intron dp - chr2L 4605442 intron dp - chr2L 4609198 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-443 157 chr2L 4613699 4613734 chr2L 4613807 4613844 7 107 13.0 9.5 11.2 0.6 145 chr2L 4613699 intron dp - chr2L 4613772 intron dp - chr2L 4613844 intron dp - chr2L_7_4610001 chr2L_4610001 RAL-443 158 chr2L 4626327 4626343 chr2L 4626762 4626788 6 442 17.5 9.5 13.5 0.4 461 chr2L 4626327 intergenic not near genes chr2L 4626558 intergenic not near genes chr2L 4626788 intergenic not near genes chr2L_6_4625001 chr2L_4625001 RAL-443 159 chr2L 4630626 4630679 chr2L 4630745 4630785 4 107 4.5 6.0 5.2 0.6 159 chr2L 4630626 intergenic not near genes chr2L 4630706 intergenic not near genes chr2L 4630785 intergenic not near genes chr2L_4_4630001 chr2L_4630001 RAL-443 160 chr2L 4661824 4661851 chr2L 4669424 4669451 opus 8 7600 5.5 9.5 7.5 0.9 7627 chr2L 4661824 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669451 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-443 161 chr2L 4770097 4770134 chr2L 4770200 4770237 9 100 7.5 4.5 6.0 1.3 140 chr2L 4770097 intron CG15630 - chr2L 4770167 intron CG15630 - chr2L 4770237 intron CG15630 - chr2L_9_4770001 chr2L_4770001 RAL-443 162 chr2L 4781109 4781119 chr2L 4781239 4781239 4 128 11.5 12.5 12.0 0.3 130 chr2L 4781109 intron CG15630 - chr2L 4781174 intron CG15630 - chr2L 4781239 intron CG15630 - chr2L_4_4780001 chr2L_4780001 RAL-443 163 chr2L 4819472 4819515 chr2L 4819615 4819658 8 142 4.0 4.5 4.2 1.5 186 chr2L 4819472 intergenic not near genes chr2L 4819565 intergenic not near genes chr2L 4819658 intergenic not near genes chr2L_8_4815001 chr2L_4815001 RAL-443 164 chr2L 4841056 4841103 chr2L 4841152 4841199 7 85 7.0 7.0 7.0 0.9 143 chr2L 4841056 intron CG12194 + chr2L 4841128 intron CG12194 + chr2L 4841199 3` UTR CG12194 + chr2L_7_4840001 chr2L_4840001 RAL-443 165 chr2L 4858453 4858484 chr2L 4858561 4858592 4 108 12.0 14.0 13.0 0.3 139 chr2L 4858453 intron pog + chr2L 4858522 intron pog + chr2L 4858592 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-443 166 chr2L 4869453 4869481 chr2L 4869553 4869581 5 94 9.0 11.0 10.0 0.5 128 chr2L 4869453 intron pog + chr2L 4869517 intron pog + chr2L 4869581 intron pog + chr2L_5_4865001 chr2L_4865001 RAL-443 167 chr2L 4896440 4896472 chr2L 4896552 4896584 7 111 11.0 13.5 12.2 0.5 144 chr2L 4896440 intron CG3036 + chr2L 4896512 intron CG3036 + chr2L 4896584 intron CG3036 + chr2L_7_4895001 chr2L_4895001 RAL-443 168 chr2L 4918152 4918199 chr2L 4923237 4923330 jockey 6 5096 3.0 0.0 1.5 2.4 5178 chr2L 4918152 intron hoe1 - chr2L 4920741 intron hoe1 - chr2L 4923330 intron hoe1 - chr2L_6_4920001 chr2L_4920001 RAL-443 169 chr2L 4923236 4923253 chr2L 4923347 4923364 10 110 0.0 5.0 2.5 2.9 128 chr2L 4923236 intron hoe1 - chr2L 4923300 intron hoe1 - chr2L 4923364 intron hoe1 - chr2L_10_4920001 chr2L_4920001 RAL-443 170 chr2L 4953509 4953534 chr2L 4953765 4953795 pogo 6 258 3.0 2.0 2.5 1.7 286 chr2L 4953509 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953795 intergenic Jon25Bi - chr2L_6_4950001 chr2L_4950001 RAL-443 171 chr2L 4996084 4996116 chr2L 4996165 4996213 6 94 14.5 13.5 14.0 0.4 129 chr2L 4996084 intron Rtnl1 - chr2L 4996148 intron Rtnl1 - chr2L 4996213 intron Rtnl1 - chr2L_6_4995001 chr2L_4995001 RAL-443 172 chr2L 5027963 5027990 chr2L 5028046 5028062 6 88 15.0 15.5 15.2 0.4 99 chr2L 5027963 intron vkg - chr2L 5028012 intron vkg - chr2L 5028062 intron vkg - chr2L_6_5025001 chr2L_5025001 RAL-443 173 chr2L 5028476 5028515 chr2L 5028586 5028625 7 110 13.0 13.0 13.0 0.5 149 chr2L 5028476 intergenic vkg - chr2L 5028550 intergenic vkg - chr2L 5028625 intergenic vkg - chr2L_7_5025001 chr2L_5025001 RAL-443 174 chr2L 5040671 5040718 chr2L 5040779 5040795 15 111 14.0 15.5 14.8 0.9 124 chr2L 5040671 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040733 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040795 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_15_5040001 chr2L_5040001 RAL-443 175 chr2L 5092394 5092433 chr2L 5092501 5092540 5 105 9.0 9.5 9.2 0.5 146 chr2L 5092394 intron pgant5 - chr2L 5092467 intron pgant5 - chr2L 5092540 intron pgant5 - chr2L_5_5090001 chr2L_5090001 RAL-443 176 chr2L 5104209 5104248 chr2L 5104315 5104354 9 101 17.0 16.5 16.8 0.5 145 chr2L 5104209 intron Msp300 + chr2L 5104282 intron Msp300 + chr2L 5104354 intron Msp300 + chr2L_9_5100001 chr2L_5100001 RAL-443 177 chr2L 5117285 5117302 chr2L 5117381 5117398 6 97 16.5 15.5 16.0 0.4 113 chr2L 5117285 intron Msp300 + chr2L 5117342 intron Msp300 + chr2L 5117398 intron Msp300 + chr2L_6_5115001 chr2L_5115001 RAL-443 178 chr2L 5117304 5117322 chr2L 5117380 5117409 6 82 17.0 15.0 16.0 0.4 105 chr2L 5117304 intron Msp300 + chr2L 5117356 intron Msp300 + chr2L 5117409 intron Msp300 + chr2L_6_5115001 chr2L_5115001 RAL-443 179 chr2L 5237890 5237929 chr2L 5237999 5238035 4 107 5.5 6.5 6.0 0.6 145 chr2L 5237890 intron tkv - chr2L 5237962 intron tkv - chr2L 5238035 intron tkv - chr2L_4_5235001 chr2L_5235001 RAL-443 180 chr2L 5238256 5238269 chr2L 5238432 5238445 4 176 11.0 14.0 12.5 0.3 189 chr2L 5238256 intron tkv - chr2L 5238350 intron tkv - chr2L 5238445 intron tkv - chr2L_4_5235001 chr2L_5235001 RAL-443 181 chr2L 5342752 5342789 chr2L 5345152 5345189 Doc 8 2391 7.0 8.5 7.8 0.9 2437 chr2L 5342752 intergenic not near genes chr2L 5343970 intergenic not near genes chr2L 5345189 intergenic not near genes chr2L_8_5340001 chr2L_5340001 RAL-443 182 chr2L 5378416 5378449 chr2L 5378515 5378548 8 99 17.5 16.5 17.0 0.4 132 chr2L 5378416 intergenic not near genes chr2L 5378482 intergenic not near genes chr2L 5378548 intergenic not near genes chr2L_8_5375001 chr2L_5375001 RAL-443 183 chr2L 5433853 5433870 chr2L 5433953 5433970 7 98 18.0 17.5 17.8 0.4 117 chr2L 5433853 3` UTR CR43715 - chr2L 5433912 3` UTR CR43715 - chr2L 5433970 3` UTR CR43715 - chr2L_7_5430001 chr2L_5430001 RAL-443 184 chr2L 5475147 5475158 chr2L 5475267 5475271 5 122 4.5 5.5 5.0 0.8 124 chr2L 5475147 intergenic not near genes chr2L 5475209 intergenic not near genes chr2L 5475271 intergenic not near genes chr2L_5_5475001 chr2L_5475001 RAL-443 185 chr2L 5491997 5492039 chr2L 5492088 5492137 10 94 5.5 10.0 7.8 1.1 140 chr2L 5491997 intergenic not near genes chr2L 5492067 intergenic not near genes chr2L 5492137 intergenic not near genes chr2L_10_5490001 chr2L_5490001 RAL-443 186 chr2L 5501429 5501470 chr2L 5501525 5501566 7 96 11.5 9.5 10.5 0.6 137 chr2L 5501429 intergenic not near genes chr2L 5501498 intergenic not near genes chr2L 5501566 intergenic not near genes chr2L_7_5500001 chr2L_5500001 RAL-443 187 chr2L 5508526 5508563 chr2L 5508622 5508659 7 92 6.5 12.5 9.5 0.7 133 chr2L 5508526 intergenic not near genes chr2L 5508592 intergenic not near genes chr2L 5508659 intergenic not near genes chr2L_7_5505001 chr2L_5505001 RAL-443 188 chr2L 5676879 5676917 chr2L 5676990 5677033 9 113 15.0 17.5 16.2 0.5 154 chr2L 5676879 intergenic not near genes chr2L 5676956 intergenic not near genes chr2L 5677033 intergenic not near genes chr2L_9_5675001 chr2L_5675001 RAL-443 189 chr2L 5691810 5691857 chr2L 5691932 5691979 10 122 20.0 15.0 17.5 0.5 169 chr2L 5691810 intergenic CR44819 +,CR44820 - chr2L 5691894 intergenic CR44819 +,CR44820 - chr2L 5691979 intergenic CR44819 + chr2L_10_5690001 chr2L_5690001 RAL-443 190 chr2L 5695843 5695891 chr2L 5695955 5695999 16 104 17.5 12.5 15.0 1.0 156 chr2L 5695843 intergenic not near genes chr2L 5695921 intergenic not near genes chr2L 5695999 intergenic not near genes chr2L_16_5695001 chr2L_5695001 RAL-443 191 chr2L 5726202 5726235 chr2L 5726301 5726334 5 98 14.5 15.0 14.8 0.3 132 chr2L 5726202 intron CG11030 + chr2L 5726268 intron CG11030 + chr2L 5726334 intron CG11030 + chr2L_5_5725001 chr2L_5725001 RAL-443 192 chr2L 5805754 5805794 chr2L 5806228 5806248 5 464 5.0 19.0 12.0 0.4 494 chr2L 5805754 intron CG11034 + chr2L 5806001 intron CG11034 + chr2L 5806248 intron CG11034 + chr2L_5_5805001 chr2L_5805001 RAL-443 193 chr2L 5815053 5815089 chr2L 5815145 5815177 6 94 16.5 10.0 13.2 0.4 124 chr2L 5815053 intergenic not near genes chr2L 5815115 intergenic not near genes chr2L 5815177 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-443 194 chr2L 5825067 5825095 chr2L 5825161 5825198 9 110 17.0 11.0 14.0 0.6 131 chr2L 5825067 5` UTR TrissinR + chr2L 5825132 5` UTR TrissinR + chr2L 5825198 5` UTR TrissinR + chr2L_9_5825001 chr2L_5825001 RAL-443 195 chr2L 5827693 5827713 chr2L 5836721 5836731 roo 6 9024 13.0 6.5 9.8 0.6 9038 chr2L 5827693 intron TrissinR + chr2L 5832212 intron TrissinR + chr2L 5836731 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-443 196 chr2L 5827714 5827738 chr2L 5836717 5836766 roo 10 9013 8.0 5.0 6.5 1.3 9052 chr2L 5827714 intron TrissinR + chr2L 5832240 intron TrissinR + chr2L 5836766 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-443 197 chr2L 5843823 5843868 chr2L 5843931 5843941 11 99 10.5 12.0 11.2 0.9 118 chr2L 5843823 intron TrissinR + chr2L 5843882 intron TrissinR + chr2L 5843941 intron TrissinR + chr2L_11_5840001 chr2L_5840001 RAL-443 198 chr2L 5852507 5852543 chr2L 5852637 5852650 6 117 15.5 11.0 13.2 0.4 143 chr2L 5852507 intron TrissinR + chr2L 5852578 intron TrissinR + chr2L 5852650 intron TrissinR + chr2L_6_5850001 chr2L_5850001 RAL-443 199 chr2L 5861947 5861990 chr2L 5862145 5862188 8 192 6.5 7.0 6.8 1.0 241 chr2L 5861947 intron rau - chr2L 5862068 intron rau - chr2L 5862188 intron rau - chr2L_8_5860001 chr2L_5860001 RAL-443 200 chr2L 5864661 5864703 chr2L 5865601 5865627 5 937 6.0 14.5 10.2 0.4 966 chr2L 5864661 intron rau - chr2L 5865144 intron rau - chr2L 5865627 intron rau - chr2L_5_5865001 chr2L_5865001 RAL-443 201 chr2L 5893503 5893538 chr2L 5894262 5894291 8 755 31.5 19.0 25.2 0.3 788 chr2L 5893503 exon Acp26Aa - chr2L 5893897 intergenic Acp26Aa - chr2L 5894291 intergenic Acp26Aa - chr2L_8_5890001 chr2L_5890001 RAL-443 202 chr2L 5904441 5904473 chr2L 5904541 5904572 7 100 6.5 2.5 4.5 1.3 131 chr2L 5904441 exon CG9021 - chr2L 5904506 intron CG9021 - chr2L 5904572 intron CG9021 - chr2L_7_5900001 chr2L_5900001 RAL-443 203 chr2L 5931310 5931506 chr2L 5931431 5931635 8 127 14.0 8.5 11.2 0.7 325 chr2L 5931310 intron dsf + chr2L 5931472 intron dsf + chr2L 5931635 intron dsf + chr2L_8_5930001 chr2L_5930001 RAL-443 204 chr2L 5989015 5989061 chr2L 5989108 5989157 24 91 5.0 2.0 3.5 5.3 142 chr2L 5989015 intergenic ifc +,lid - chr2L 5989086 intergenic ifc +,lid - chr2L 5989157 intergenic lid -,ifc + chr2L_24_5985001 chr2L_5985001 RAL-443 205 chr2L 5993322 5993327 chr2L 5993432 5993438 5 111 4.5 6.5 5.5 0.8 116 chr2L 5993322 exon lid - chr2L 5993380 intron lid - chr2L 5993438 intron lid - chr2L_5_5990001 chr2L_5990001 RAL-443 206 chr2L 5993335 5993359 chr2L 5993431 5993470 8 109 0.5 6.5 3.5 1.8 135 chr2L 5993335 exon lid - chr2L 5993402 intron lid - chr2L 5993470 intron lid - chr2L_8_5990001 chr2L_5990001 RAL-443 207 chr2L 6007096 6007120 chr2L 6007192 6007205 5 94 7.0 5.0 6.0 0.7 109 chr2L 6007096 intergenic CG9098 -,Gal - chr2L 6007150 intergenic CG9098 -,Gal - chr2L 6007205 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-443 208 chr2L 6037015 6037062 chr2L 6037113 6037160 22 93 7.5 5.5 6.5 2.9 145 chr2L 6037015 5` UTR,3` UTR mtm -,CG9117 - chr2L 6037088 3` UTR CG9117 - chr2L 6037160 exon CG9117 - chr2L_22_6035001 chr2L_6035001 RAL-443 209 chr2L 6050430 6050467 chr2L 6050554 6050591 4 124 3.5 0.5 2.0 1.3 161 chr2L 6050430 3` UTR CG12393 + chr2L 6050510 intergenic CG12393 +,CG9135 + chr2L 6050591 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-443 210 chr2L 6106225 6106230 chr2L 6106330 6106335 4 108 4.5 7.5 6.0 0.6 110 chr2L 6106225 intron stai + chr2L 6106280 intron stai + chr2L 6106335 intron stai + chr2L_4_6105001 chr2L_6105001 RAL-443 211 chr2L 6108779 6108810 chr2L 6108881 6108911 4 101 17.5 14.0 15.8 0.2 132 chr2L 6108779 intron stai + chr2L 6108845 intron stai + chr2L 6108911 intron stai + chr2L_4_6105001 chr2L_6105001 RAL-443 212 chr2L 6121455 6121508 chr2L 6121576 6121619 7 120 16.5 15.5 16.0 0.4 164 chr2L 6121455 intron stai + chr2L 6121537 intron stai + chr2L 6121619 intron stai + chr2L_7_6120001 chr2L_6120001 RAL-443 213 chr2L 6130748 6130769 chr2L 6130853 6130874 8 104 8.0 0.5 4.2 1.5 126 chr2L 6130748 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130811 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130874 intergenic CG9222 +,CG42730 -,tectonic - chr2L_8_6130001 chr2L_6130001 RAL-443 214 chr2L 6136533 6136582 chr2L 6136650 6136694 8 116 3.0 5.5 4.2 1.5 161 chr2L 6136533 intergenic not near genes chr2L 6136614 intergenic not near genes chr2L 6136694 intergenic not near genes chr2L_8_6135001 chr2L_6135001 RAL-443 215 chr2L 6201484 6201525 chr2L 6201581 6201622 4 94 13.0 18.5 15.8 0.2 138 chr2L 6201484 intron CG34380 + chr2L 6201553 intron CG34380 + chr2L 6201622 intron CG34380 + chr2L_4_6200001 chr2L_6200001 RAL-443 216 chr2L 6242959 6242973 chr2L 6243077 6243091 5 117 12.0 6.5 9.2 0.5 132 chr2L 6242959 intergenic not near genes chr2L 6243025 intergenic not near genes chr2L 6243091 intergenic not near genes chr2L_5_6240001 chr2L_6240001 RAL-443 217 chr2L 6253600 6253633 chr2L 6253695 6253729 5 96 7.0 7.0 7.0 0.6 129 chr2L 6253600 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253729 intron Ddr + chr2L_5_6250001 chr2L_6250001 RAL-443 218 chr2L 6272134 6272164 chr2L 6272222 6272234 4 86 18.5 12.5 15.5 0.2 100 chr2L 6272134 intron Ddr + chr2L 6272184 intron Ddr + chr2L 6272234 intron Ddr + chr2L_4_6270001 chr2L_6270001 RAL-443 219 chr2L 6279625 6279652 chr2L 6279724 6279751 INE-1 13 99 14.0 2.5 8.2 1.4 126 chr2L 6279625 intron Ddr + chr2L 6279688 intron Ddr + chr2L 6279751 intron Ddr + chr2L_13_6275001 chr2L_6275001 RAL-443 220 chr2L 6283925 6283968 chr2L 6284056 6284093 5 130 4.0 2.5 3.2 1.2 168 chr2L 6283925 intron Ddr + chr2L 6284009 intron Ddr + chr2L 6284093 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-443 221 chr2L 6318714 6318761 chr2L 6318888 6318935 12 170 12.5 10.5 11.5 1.0 221 chr2L 6318714 intron Ddr + chr2L 6318824 intron Ddr + chr2L 6318935 intron Ddr + chr2L_12_6315001 chr2L_6315001 RAL-443 222 chr2L 6343673 6343693 chr2L 6343967 6343987 4 295 25.0 29.5 27.2 0.1 314 chr2L 6343673 intron Cpr + chr2L 6343830 intron Cpr + chr2L 6343987 intron Cpr + chr2L_4_6340001 chr2L_6340001 RAL-443 223 chr2L 6363131 6363160 chr2L 6366073 6366102 Burdock 8 2938 9.5 3.0 6.2 1.1 2971 chr2L 6363131 intergenic not near genes chr2L 6364616 intergenic not near genes chr2L 6366102 intergenic not near genes chr2L_8_6360001 chr2L_6360001 RAL-443 224 chr2L 6363163 6363179 chr2L 6366072 6366080 Burdock 11 2929 5.0 3.0 4.0 2.2 2917 chr2L 6363163 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366080 intergenic not near genes chr2L_11_6360001 chr2L_6360001 RAL-443 225 chr2L 6380041 6380087 chr2L 6380142 6380188 8 95 4.0 6.0 5.0 1.3 147 chr2L 6380041 intron CG42368 - chr2L 6380114 intron CG42368 - chr2L 6380188 intron CG42368 - chr2L_8_6380001 chr2L_6380001 RAL-443 226 chr2L 6426838 6426886 chr2L 6445116 6445145 roo 19 18277 8.5 6.5 7.5 2.2 18307 chr2L 6426838 3` UTR CG9527 - chr2L 6435992 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_19_6435001 chr2L_6435001 RAL-443 227 chr2L 6463559 6463575 chr2L 6463645 6463660 4 85 9.5 4.5 7.0 0.5 101 chr2L 6463559 exon CG16947 - chr2L 6463610 exon CG16947 - chr2L 6463660 exon CG16947 - chr2L_4_6460001 chr2L_6460001 RAL-443 228 chr2L 6536805 6536821 chr2L 6536945 6536963 5 140 18.0 22.0 20.0 0.2 158 chr2L 6536805 intron eya - chr2L 6536884 intron eya - chr2L 6536963 intron eya - chr2L_5_6535001 chr2L_6535001 RAL-443 229 chr2L 6544358 6544393 chr2L 6544464 6544498 20 111 9.0 10.5 9.8 1.9 140 chr2L 6544358 intron eya - chr2L 6544428 intron eya - chr2L 6544498 intron eya - chr2L_20_6540001 chr2L_6540001 RAL-443 230 chr2L 6590086 6590101 chr2L 6590184 6590199 4 98 4.0 2.5 3.2 1.0 113 chr2L 6590086 intron CG11319 - chr2L 6590142 intron CG11319 - chr2L 6590199 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-443 231 chr2L 6612000 6612004 chr2L 6612329 6612349 5 322 22.0 31.5 26.8 0.2 349 chr2L 6612000 intron CG11050 + chr2L 6612174 intron CG11050 + chr2L 6612349 intron CG11050 + chr2L_5_6610001 chr2L_6610001 RAL-443 232 chr2L 6626867 6626890 chr2L 6626972 6626995 5 102 19.0 10.5 14.8 0.3 128 chr2L 6626867 intron Oatp26F - chr2L 6626931 intron Oatp26F - chr2L 6626995 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-443 233 chr2L 6655515 6655546 chr2L 6655887 6655917 6 362 14.0 8.0 11.0 0.5 402 chr2L 6655515 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655917 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-443 234 chr2L 6658069 6658097 chr2L 6658177 6658195 7 116 6.0 9.5 7.8 0.8 126 chr2L 6658069 5` UTR CG31636 - chr2L 6658132 5` UTR CG31636 - chr2L 6658195 intergenic CG31636 -,CG11070 + chr2L_7_6655001 chr2L_6655001 RAL-443 235 chr2L 6746088 6746104 chr2L 6746173 6746194 5 93 6.0 2.5 4.2 1.0 106 chr2L 6746088 intron CG11221 + chr2L 6746141 intron CG11221 + chr2L 6746194 intron CG11221 + chr2L_5_6745001 chr2L_6745001 RAL-443 236 chr2L 6749130 6749146 chr2L 6749374 6749405 5 246 21.0 33.0 27.0 0.2 275 chr2L 6749130 intron CG11221 + chr2L 6749268 intron CG11221 + chr2L 6749405 intron CG11221 + chr2L_5_6745001 chr2L_6745001 RAL-443 237 chr2L 6767455 6767507 chr2L 6767561 6767607 5 104 11.5 11.0 11.2 0.4 152 chr2L 6767455 exon CG11321 - chr2L 6767531 exon CG11321 - chr2L 6767607 exon CG11321 - chr2L_5_6765001 chr2L_6765001 RAL-443 238 chr2L 6799515 6799620 chr2L 6799623 6799720 8 107 4.0 6.0 5.0 1.3 205 chr2L 6799515 5` UTR CR43610 + chr2L 6799618 intergenic CR43610 +,CG17376 - chr2L 6799720 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-443 239 chr2L 6839712 6839753 chr2L 6839825 6839866 6 113 15.0 14.5 14.8 0.4 154 chr2L 6839712 intergenic not near genes chr2L 6839789 intergenic not near genes chr2L 6839866 intergenic not near genes chr2L_6_6835001 chr2L_6835001 RAL-443 240 chr2L 6850361 6850425 chr2L 6850464 6850546 15 113 3.5 2.5 3.0 3.8 185 chr2L 6850361 intergenic not near genes chr2L 6850454 intergenic not near genes chr2L 6850546 intergenic not near genes chr2L_15_6850001 chr2L_6850001 RAL-443 241 chr2L 6887479 6887490 chr2L 6887649 6887660 6 170 6.5 0.0 3.2 1.4 181 chr2L 6887479 intron Nlg2 + chr2L 6887570 intron Nlg2 + chr2L 6887660 intron Nlg2 + chr2L_6_6885001 chr2L_6885001 RAL-443 242 chr2L 6891437 6891447 chr2L 6891555 6891565 4 118 13.5 11.5 12.5 0.3 128 chr2L 6891437 intron Nlg2 + chr2L 6891501 intron Nlg2 + chr2L 6891565 intron Nlg2 + chr2L_4_6890001 chr2L_6890001 RAL-443 243 chr2L 6891455 6891471 chr2L 6891551 6891589 4 112 11.5 11.5 11.5 0.3 134 chr2L 6891455 intron Nlg2 + chr2L 6891522 intron Nlg2 + chr2L 6891589 intron Nlg2 + chr2L_4_6890001 chr2L_6890001 RAL-443 244 chr2L 7003765 7003816 chr2L 7003909 7003960 5 139 17.0 23.5 20.2 0.2 195 chr2L 7003765 intron uif - chr2L 7003862 intron uif - chr2L 7003960 intron uif - chr2L_5_7000001 chr2L_7000001 RAL-443 245 chr2L 7043517 7043530 chr2L 7043671 7043679 5 153 15.0 23.5 19.2 0.2 162 chr2L 7043517 intron milt + chr2L 7043598 intron milt + chr2L 7043679 intron milt + chr2L_5_7040001 chr2L_7040001 RAL-443 246 chr2L 7081686 7081727 chr2L 7081787 7081828 26 100 3.5 3.5 3.5 5.8 142 chr2L 7081686 intron Pvf2 - chr2L 7081757 intron Pvf2 - chr2L 7081828 intron Pvf2 - chr2L_26_7080001 chr2L_7080001 RAL-443 247 chr2L 7125774 7125811 chr2L 7125909 7125947 6 134 5.0 4.5 4.8 1.0 173 chr2L 7125774 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125947 intron Pvf3 - chr2L_6_7125001 chr2L_7125001 RAL-443 248 chr2L 7140817 7140872 chr2L 7140919 7140974 13 100 8.0 7.5 7.8 1.5 157 chr2L 7140817 intron Pvf3 - chr2L 7140896 intron Pvf3 - chr2L 7140974 intron Pvf3 - chr2L_13_7140001 chr2L_7140001 RAL-443 249 chr2L 7178134 7178174 chr2L 7178243 7178284 8 108 8.5 11.5 10.0 0.7 150 chr2L 7178134 3` UTR CR44613 - chr2L 7178209 intergenic CR44613 - chr2L 7178284 intergenic CR44613 - chr2L_8_7175001 chr2L_7175001 RAL-443 250 chr2L 7197979 7198017 chr2L 7198078 7198116 15 97 7.5 4.5 6.0 2.1 137 chr2L 7197979 intron CG4502 - chr2L 7198048 intron CG4502 - chr2L 7198116 intron CG4502 - chr2L_15_7195001 chr2L_7195001 RAL-443 251 chr2L 7247476 7247520 chr2L 7247574 7247617 5 92 16.5 16.5 16.5 0.3 141 chr2L 7247476 intron Ndae1 - chr2L 7247546 intron Ndae1 - chr2L 7247617 intron Ndae1 - chr2L_5_7245001 chr2L_7245001 RAL-443 252 chr2L 7254474 7254544 chr2L 7254571 7254642 13 94 0.0 0.0 0.0 13.0 168 chr2L 7254474 intergenic not near genes chr2L 7254558 intergenic not near genes chr2L 7254642 intergenic not near genes chr2L_13_7250001 chr2L_7250001 RAL-443 253 chr2L 7335183 7335231 chr2L 7335300 7335348 12 114 5.0 4.5 4.8 2.1 165 chr2L 7335183 intron Wnt6 + chr2L 7335266 intron Wnt6 + chr2L 7335348 intron Wnt6 + chr2L_12_7335001 chr2L_7335001 RAL-443 254 chr2L 7343318 7343356 chr2L 7350439 7350492 roo 6 7128 1.0 2.0 1.5 2.4 7174 chr2L 7343318 intron Wnt6 + chr2L 7346905 intron Wnt6 + chr2L 7350492 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-443 255 chr2L 7375797 7375820 chr2L 7375930 7375948 4 132 7.0 13.5 10.2 0.4 151 chr2L 7375797 exon Wnt10 + chr2L 7375872 intron Wnt10 + chr2L 7375948 intron Wnt10 + chr2L_4_7375001 chr2L_7375001 RAL-443 256 chr2L 7436185 7436211 chr2L 7436290 7436321 5 102 14.5 19.0 16.8 0.3 136 chr2L 7436185 intergenic not near genes chr2L 7436253 intergenic not near genes chr2L 7436321 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-443 257 chr2L 7487311 7487330 chr2L 7487377 7487426 5 90 13.5 13.5 13.5 0.3 115 chr2L 7487311 intron Ziz - chr2L 7487368 intron Ziz - chr2L 7487426 intron Ziz - chr2L_5_7485001 chr2L_7485001 RAL-443 258 chr2L 7513756 7513798 chr2L 7513853 7513884 8 91 12.5 14.5 13.5 0.6 128 chr2L 7513756 intron RapGAP1 - chr2L 7513820 intron RapGAP1 - chr2L 7513884 intron RapGAP1 - chr2L_8_7510001 chr2L_7510001 RAL-443 259 chr2L 7555198 7555233 chr2L 7555294 7555330 5 94 0.0 5.0 2.5 1.4 132 chr2L 7555198 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555330 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-443 260 chr2L 7579879 7579908 chr2L 7579981 7580010 10 100 4.5 7.5 6.0 1.4 131 chr2L 7579879 intergenic not near genes chr2L 7579944 intergenic not near genes chr2L 7580010 intergenic not near genes chr2L_10_7575001 chr2L_7575001 RAL-443 261 chr2L 7579912 7579919 chr2L 7579974 7580000 4 85 3.0 6.0 4.5 0.7 88 chr2L 7579912 intergenic not near genes chr2L 7579956 intergenic not near genes chr2L 7580000 intergenic not near genes chr2L_4_7575001 chr2L_7575001 RAL-443 262 chr2L 7590622 7590648 chr2L 7590729 7590758 4 105 9.5 7.5 8.5 0.4 136 chr2L 7590622 intergenic not near genes chr2L 7590690 intergenic not near genes chr2L 7590758 intergenic not near genes chr2L_4_7590001 chr2L_7590001 RAL-443 263 chr2L 7629149 7629187 chr2L 7629246 7629259 5 96 8.5 8.5 8.5 0.5 110 chr2L 7629149 intergenic not near genes chr2L 7629204 intergenic not near genes chr2L 7629259 intergenic not near genes chr2L_5_7625001 chr2L_7625001 RAL-443 264 chr2L 7640401 7640421 chr2L 7640502 7640516 7 103 4.0 1.0 2.5 2.0 115 chr2L 7640401 intergenic not near genes chr2L 7640458 intergenic not near genes chr2L 7640516 intergenic not near genes chr2L_7_7640001 chr2L_7640001 RAL-443 265 chr2L 7668638 7668654 chr2L 7668724 7668776 6 105 12.0 12.5 12.2 0.5 138 chr2L 7668638 intron,intron Slob -,Myo28B1 + chr2L 7668707 intron,intron Slob -,Myo28B1 + chr2L 7668776 intron,intron Slob -,Myo28B1 + chr2L_6_7665001 chr2L_7665001 RAL-443 266 chr2L 7702880 7702914 chr2L 7703068 7703102 6 188 6.0 7.0 6.5 0.8 222 chr2L 7702880 5` UTR Tep3 + chr2L 7702991 5` UTR Tep3 + chr2L 7703102 5` UTR Tep3 + chr2L_6_7700001 chr2L_7700001 RAL-443 267 chr2L 7769790 7769828 chr2L 7769883 7769927 8 98 12.0 9.0 10.5 0.7 137 chr2L 7769790 intron CG7191 + chr2L 7769858 intron CG7191 + chr2L 7769927 intron CG7191 + chr2L_8_7765001 chr2L_7765001 RAL-443 268 chr2L 7854239 7854268 chr2L 7854331 7854337 4 89 11.5 11.5 11.5 0.3 98 chr2L 7854239 intron CG14535 - chr2L 7854288 intron CG14535 - chr2L 7854337 intron CG14535 - chr2L_4_7850001 chr2L_7850001 RAL-443 269 chr2L 7867557 7867588 chr2L 7867661 7867680 6 109 14.0 12.0 13.0 0.4 123 chr2L 7867557 intron Proc - chr2L 7867618 intron Proc - chr2L 7867680 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-443 270 chr2L 7922721 7922763 chr2L 7922822 7922833 6 93 17.5 20.0 18.8 0.3 112 chr2L 7922721 intron Snoo - chr2L 7922777 intron Snoo - chr2L 7922833 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-443 271 chr2L 7959021 7959071 chr2L 7960452 7960477 pogo 18 1424 4.5 1.5 3.0 4.5 1456 chr2L 7959021 intron Snoo - chr2L 7959749 intron Snoo - chr2L 7960477 intron Snoo - chr2L_18_7955001 chr2L_7955001 RAL-443 272 chr2L 7997019 7997063 chr2L 7997139 7997183 6 119 19.0 15.0 17.0 0.3 164 chr2L 7997019 intron CG7227 - chr2L 7997101 intron CG7227 - chr2L 7997183 intron CG7227 - chr2L_6_7995001 chr2L_7995001 RAL-443 273 chr2L 7998546 7998568 chr2L 7998644 7998666 6 98 4.5 2.0 3.2 1.4 120 chr2L 7998546 intergenic Sirup + chr2L 7998606 intergenic Sirup + chr2L 7998666 intergenic Sirup + chr2L_6_7995001 chr2L_7995001 RAL-443 274 chr2L 8013598 8013623 chr2L 8018822 8018825 copia 8 5221 11.0 0.5 5.8 1.2 5227 chr2L 8013598 intron Tg + chr2L 8016212 intron Tg + chr2L 8018825 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-443 275 chr2L 8018815 8018838 chr2L 8023619 8023632 Doc 9 4802 0.5 10.5 5.5 1.4 4817 chr2L 8018815 intron Tg + chr2L 8021224 intron Tg + chr2L 8023632 intron Tg + chr2L_9_8020001 chr2L_8020001 RAL-443 276 chr2L 8044076 8044125 chr2L 8044175 8044220 17 92 2.5 2.5 2.5 4.9 144 chr2L 8044076 intron CG7466 + chr2L 8044148 intron CG7466 + chr2L 8044220 intron CG7466 + chr2L_17_8040001 chr2L_8040001 RAL-443 277 chr2L 8128039 8128046 chr2L 8128136 8128150 4 102 22.5 24.5 23.5 0.2 111 chr2L 8128039 intron CG8668 + chr2L 8128094 intron CG8668 + chr2L 8128150 intron CG8668 + chr2L_4_8125001 chr2L_8125001 RAL-443 278 chr2L 8143413 8143451 chr2L 8143504 8143547 10 94 10.5 10.5 10.5 0.9 134 chr2L 8143413 intron,3` UTR CG8552 -,CG42762 - chr2L 8143480 intron,3` UTR CG8552 -,CG42762 - chr2L 8143547 intron,exon CG8552 -,CG42762 - chr2L_10_8140001 chr2L_8140001 RAL-443 279 chr2L 8167132 8167180 chr2L 8167243 8167275 8 108 12.5 10.0 11.2 0.7 143 chr2L 8167132 intron Piezo + chr2L 8167204 intron Piezo + chr2L 8167275 intron Piezo + chr2L_8_8165001 chr2L_8165001 RAL-443 280 chr2L 8171275 8171286 chr2L 8171376 8171387 5 101 0.0 12.0 6.0 0.7 112 chr2L 8171275 intron Piezo + chr2L 8171331 intron Piezo + chr2L 8171387 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-443 281 chr2L 8171289 8171300 chr2L 8171372 8171401 5 97 0.0 11.0 5.5 0.8 112 chr2L 8171289 intron Piezo + chr2L 8171345 intron Piezo + chr2L 8171401 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-443 282 chr2L 8190175 8190211 chr2L 8190281 8190320 8 108 16.5 19.0 17.8 0.4 145 chr2L 8190175 intergenic Piezo +,CG34134 - chr2L 8190248 intergenic CG34134 -,Piezo + chr2L 8190320 3` UTR CG34134 - chr2L_8_8190001 chr2L_8190001 RAL-443 283 chr2L 8244712 8244746 chr2L 8244854 8244888 7 136 1.0 4.5 2.8 1.8 176 chr2L 8244712 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244888 intron CG8086 - chr2L_7_8240001 chr2L_8240001 RAL-443 284 chr2L 8271626 8271644 chr2L 8271717 8271735 6 92 13.0 17.5 15.2 0.4 109 chr2L 8271626 intron Btk29A - chr2L 8271680 intron Btk29A - chr2L 8271735 intron Btk29A - chr2L_6_8270001 chr2L_8270001 RAL-443 285 chr2L 8285007 8285012 chr2L 8285101 8285103 4 94 15.5 15.0 15.2 0.2 96 chr2L 8285007 intron Btk29A - chr2L 8285055 intron Btk29A - chr2L 8285103 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-443 286 chr2L 8285016 8285028 chr2L 8285096 8285103 4 80 15.0 15.5 15.2 0.2 87 chr2L 8285016 intron Btk29A - chr2L 8285060 intron Btk29A - chr2L 8285103 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-443 287 chr2L 8324108 8324156 chr2L 8324220 8324268 10 111 8.0 2.0 5.0 1.7 160 chr2L 8324108 intron CG7781 - chr2L 8324188 intron CG7781 - chr2L 8324268 intron CG7781 - chr2L_10_8320001 chr2L_8320001 RAL-443 288 chr2L 8352646 8352678 chr2L 8352886 8352906 10 239 13.0 21.5 17.2 0.5 260 chr2L 8352646 intron Mur29B + chr2L 8352776 intron Mur29B + chr2L 8352906 intron Mur29B + chr2L_10_8350001 chr2L_8350001 RAL-443 289 chr2L 8411790 8411807 chr2L 8411962 8411979 4 172 15.5 8.0 11.8 0.3 189 chr2L 8411790 5` UTR CG13397 - chr2L 8411884 intergenic CG13397 -,CG13398 - chr2L 8411979 intergenic CG13397 -,CG13398 - chr2L_4_8410001 chr2L_8410001 RAL-443 290 chr2L 8412869 8412921 chr2L 8412976 8413027 4 106 26.0 22.5 24.2 0.2 158 chr2L 8412869 3` UTR CG13398 - chr2L 8412948 3` UTR CG13398 - chr2L 8413027 3` UTR CG13398 - chr2L_4_8410001 chr2L_8410001 RAL-443 291 chr2L 8452401 8452449 chr2L 8461591 8461633 roo 17 9190 7.0 6.5 6.8 2.2 9232 chr2L 8452401 intron fu12 - chr2L 8457017 intron fu12 - chr2L 8461633 intron fu12 - chr2L_17_8455001 chr2L_8455001 RAL-443 292 chr2L 8477252 8477266 chr2L 8477681 8477688 6 446 11.5 14.0 12.8 0.4 436 chr2L 8477252 intron d + chr2L 8477470 intron,exon d +,CheA29a + chr2L 8477688 intron,exon d +,CheA29a + chr2L_6_8475001 chr2L_8475001 RAL-443 293 chr2L 8498185 8498239 chr2L 8498286 8498340 13 98 14.5 11.0 12.8 0.9 155 chr2L 8498185 intron Dh31 - chr2L 8498262 intron Dh31 - chr2L 8498340 intron Dh31 - chr2L_13_8495001 chr2L_8495001 RAL-443 294 chr2L 8510120 8510172 chr2L 8510224 8510281 6 108 2.0 1.5 1.8 2.1 161 chr2L 8510120 exon CG13096 - chr2L 8510200 intron CG13096 - chr2L 8510281 intron CG13096 - chr2L_6_8510001 chr2L_8510001 RAL-443 295 chr2L 8525165 8525218 chr2L 8525262 8525317 8 98 15.0 10.5 12.8 0.6 152 chr2L 8525165 3` UTR,3` UTR,3` UTR Acer +,lmgA -,lmgB - chr2L 8525241 3` UTR,3` UTR,3` UTR Acer +,lmgA -,lmgB - chr2L 8525317 3` UTR,3` UTR,3` UTR Acer +,lmgA -,lmgB - chr2L_8_8525001 chr2L_8525001 RAL-443 296 chr2L 8575891 8575926 chr2L 8576286 8576330 8 399 9.0 15.0 12.0 0.6 439 chr2L 8575891 intron Sema-1a + chr2L 8576110 intron Sema-1a + chr2L 8576330 intron Sema-1a + chr2L_8_8575001 chr2L_8575001 RAL-443 297 chr2L 8587285 8587304 chr2L 8587382 8587401 6 95 8.5 6.5 7.5 0.7 116 chr2L 8587285 intron Sema-1a + chr2L 8587343 intron Sema-1a + chr2L 8587401 intron Sema-1a + chr2L_6_8585001 chr2L_8585001 RAL-443 298 chr2L 8594446 8594495 chr2L 8601520 8601569 297 7 7074 6.5 0.0 3.2 1.7 7123 chr2L 8594446 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601569 intron Sema-1a + chr2L_7_8595001 chr2L_8595001 RAL-443 299 chr2L 8604959 8604994 chr2L 8605070 8605112 8 114 18.5 15.5 17.0 0.4 153 chr2L 8604959 intron Sema-1a + chr2L 8605036 intron Sema-1a + chr2L 8605112 intron Sema-1a + chr2L_8_8605001 chr2L_8605001 RAL-443 300 chr2L 8612848 8612866 chr2L 8612945 8612963 7 97 12.5 17.5 15.0 0.4 115 chr2L 8612848 intron Sema-1a + chr2L 8612906 intron Sema-1a + chr2L 8612963 intron Sema-1a + chr2L_7_8610001 chr2L_8610001 RAL-443 301 chr2L 8629256 8629289 chr2L 8629348 8629387 10 96 14.5 19.5 17.0 0.6 131 chr2L 8629256 intron Sema-1a + chr2L 8629322 intron Sema-1a + chr2L 8629387 intron Sema-1a + chr2L_10_8625001 chr2L_8625001 RAL-443 302 chr2L 8653083 8653131 chr2L 8653185 8653226 6 101 12.0 12.5 12.2 0.5 143 chr2L 8653083 intron Sema-1a + chr2L 8653154 intron Sema-1a + chr2L 8653226 intron Sema-1a + chr2L_6_8650001 chr2L_8650001 RAL-443 303 chr2L 8665229 8665263 chr2L 8665329 8665358 7 99 18.0 19.5 18.8 0.4 129 chr2L 8665229 intron Sema-1a + chr2L 8665294 intron Sema-1a + chr2L 8665358 intron Sema-1a + chr2L_7_8665001 chr2L_8665001 RAL-443 304 chr2L 8695888 8695905 chr2L 8695968 8696005 5 96 18.0 14.5 16.2 0.3 117 chr2L 8695888 intron Hnf4 - chr2L 8695946 intron Hnf4 - chr2L 8696005 intron Hnf4 - chr2L_5_8695001 chr2L_8695001 RAL-443 305 chr2L 8723096 8723113 chr2L 8731492 8731510 Tirant 8 8397 8.5 6.0 7.2 1.0 8414 chr2L 8723096 intron raw - chr2L 8727303 intron raw - chr2L 8731510 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-443 306 chr2L 8723114 8723147 chr2L 8731491 8731505 Tirant 13 8392 4.5 5.5 5.0 2.2 8391 chr2L 8723114 intron raw - chr2L 8727310 intron raw - chr2L 8731505 intron raw - chr2L_13_8725001 chr2L_8725001 RAL-443 307 chr2L 8736245 8736258 chr2L 8736345 8736358 5 100 4.0 10.5 7.2 0.6 113 chr2L 8736245 intron raw - chr2L 8736302 intron raw - chr2L 8736358 intron raw - chr2L_5_8735001 chr2L_8735001 RAL-443 308 chr2L 8772775 8772819 chr2L 8772880 8772886 6 99 13.5 9.5 11.5 0.5 111 chr2L 8772775 intergenic CG9466 -,CG9465 - chr2L 8772830 intergenic CG9466 -,CG9465 - chr2L 8772886 intergenic CG9466 - chr2L_6_8770001 chr2L_8770001 RAL-443 309 chr2L 8794975 8794989 chr2L 8795082 8795096 4 107 19.5 19.5 19.5 0.2 121 chr2L 8794975 intergenic not near genes chr2L 8795036 intergenic not near genes chr2L 8795096 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-443 310 chr2L 8799793 8799831 chr2L 8799921 8799958 5 128 24.0 19.5 21.8 0.2 165 chr2L 8799793 intergenic not near genes chr2L 8799876 intergenic not near genes chr2L 8799958 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-443 311 chr2L 8809144 8809172 chr2L 8809242 8809263 4 96 9.5 6.5 8.0 0.4 119 chr2L 8809144 intergenic not near genes chr2L 8809204 intergenic not near genes chr2L 8809263 intergenic not near genes chr2L_4_8805001 chr2L_8805001 RAL-443 312 chr2L 8820911 8820955 chr2L 8821010 8821054 14 97 13.5 13.0 13.2 1.0 143 chr2L 8820911 intergenic not near genes chr2L 8820982 intergenic not near genes chr2L 8821054 intergenic not near genes chr2L_14_8820001 chr2L_8820001 RAL-443 313 chr2L 8921740 8921762 chr2L 8921812 8921847 10 91 14.0 12.0 13.0 0.7 107 chr2L 8921740 intron CG34398 + chr2L 8921794 intron CG34398 + chr2L 8921847 intron CG34398 + chr2L_10_8920001 chr2L_8920001 RAL-443 314 chr2L 8939647 8939692 chr2L 8939747 8939792 10 100 15.0 19.5 17.2 0.5 145 chr2L 8939647 3` UTR Tsp29Fb + chr2L 8939720 3` UTR Tsp29Fb + chr2L 8939792 3` UTR CG9510 - chr2L_10_8935001 chr2L_8935001 RAL-443 315 chr2L 8956211 8956242 chr2L 8956302 8956332 6 92 6.0 5.5 5.8 0.9 121 chr2L 8956211 intron CG31886 - chr2L 8956272 intron CG31886 - chr2L 8956332 intron CG31886 - chr2L_6_8955001 chr2L_8955001 RAL-443 316 chr2L 8999930 8999967 chr2L 9000031 9000068 4 101 13.5 8.5 11.0 0.3 138 chr2L 8999930 intergenic Try29F + chr2L 8999999 intergenic Try29F + chr2L 9000068 intergenic Try29F + chr2L_4_8995001 chr2L_8995001 RAL-443 317 chr2L 9000263 9000306 chr2L 9007793 9007836 roo 14 7528 7.5 4.5 6.0 2.0 7573 chr2L 9000263 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007836 intergenic not near genes chr2L_14_9000001 chr2L_9000001 RAL-443 318 chr2L 9085940 9085944 chr2L 9086039 9086047 4 102 15.5 18.5 17.0 0.2 107 chr2L 9085940 intron Toll-4 + chr2L 9085994 intron Toll-4 + chr2L 9086047 intron Toll-4 + chr2L_4_9085001 chr2L_9085001 RAL-443 319 chr2L 9095563 9095607 chr2L 9095670 9095704 8 102 4.5 7.5 6.0 1.1 141 chr2L 9095563 intergenic not near genes chr2L 9095634 intergenic not near genes chr2L 9095704 intergenic not near genes chr2L_8_9095001 chr2L_9095001 RAL-443 320 chr2L 9117245 9117286 chr2L 9117353 9117394 5 104 8.0 10.0 9.0 0.5 149 chr2L 9117245 intergenic not near genes chr2L 9117320 intergenic not near genes chr2L 9117394 intergenic not near genes chr2L_5_9115001 chr2L_9115001 RAL-443 321 chr2L 9157862 9157892 chr2L 9158392 9158442 10 540 11.0 7.0 9.0 1.0 580 chr2L 9157862 intron CG32982 + chr2L 9158152 intron CG32982 + chr2L 9158442 intron CG32982 + chr2L_10_9155001 chr2L_9155001 RAL-443 322 chr2L 9158771 9158819 chr2L 9158889 9158941 14 114 4.0 0.0 2.0 4.7 170 chr2L 9158771 intron CG32982 + chr2L 9158856 intron CG32982 + chr2L 9158941 intron CG32982 + chr2L_14_9155001 chr2L_9155001 RAL-443 323 chr2L 9195860 9195878 chr2L 9195963 9195965 8 101 14.0 15.0 14.5 0.5 105 chr2L 9195860 intron tai + chr2L 9195912 intron tai + chr2L 9195965 intron tai + chr2L_8_9195001 chr2L_9195001 RAL-443 324 chr2L 9202039 9202071 chr2L 9202135 9202167 5 96 6.5 9.0 7.8 0.6 128 chr2L 9202039 intron tai + chr2L 9202103 intron tai + chr2L 9202167 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-443 325 chr2L 9217976 9217992 chr2L 9222757 9222793 Doc 5 4795 6.0 2.5 4.2 1.0 4817 chr2L 9217976 intron tai + chr2L 9220384 intron tai + chr2L 9222793 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-443 326 chr2L 9217995 9218002 chr2L 9222753 9222759 Doc 5 4778 4.0 2.5 3.2 1.2 4764 chr2L 9217995 intron tai + chr2L 9220377 intron tai + chr2L 9222759 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-443 327 chr2L 9227204 9227250 chr2L 9227309 9227353 6 103 4.5 3.5 4.0 1.2 149 chr2L 9227204 intron tai + chr2L 9227278 intron tai + chr2L 9227353 intron tai + chr2L_6_9225001 chr2L_9225001 RAL-443 328 chr2L 9264339 9264353 chr2L 9264455 9264473 5 119 11.5 15.5 13.5 0.3 134 chr2L 9264339 intron Ggamma30A + chr2L 9264406 intron Ggamma30A + chr2L 9264473 intron Ggamma30A + chr2L_5_9260001 chr2L_9260001 RAL-443 329 chr2L 9264356 9264378 chr2L 9264450 9264498 7 113 14.0 16.0 15.0 0.4 142 chr2L 9264356 intron Ggamma30A + chr2L 9264427 intron Ggamma30A + chr2L 9264498 intron Ggamma30A + chr2L_7_9260001 chr2L_9260001 RAL-443 330 chr2L 9297357 9297404 chr2L 9297454 9297501 16 96 7.5 7.0 7.2 2.0 144 chr2L 9297357 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297501 3` UTR Ggamma30A + chr2L_16_9295001 chr2L_9295001 RAL-443 331 chr2L 9303346 9303488 chr2L 9303469 9303585 28 104 0.0 0.0 0.0 28.0 239 chr2L 9303346 intergenic not near genes chr2L 9303466 intergenic not near genes chr2L 9303585 intergenic not near genes chr2L_28_9300001 chr2L_9300001 RAL-443 332 chr2L 9304484 9304515 chr2L 9304583 9304613 10 98 15.5 14.0 14.8 0.6 129 chr2L 9304484 3` UTR CR42844 - chr2L 9304548 3` UTR CR42844 - chr2L 9304613 3` UTR CR42844 - chr2L_10_9300001 chr2L_9300001 RAL-443 333 chr2L 9322797 9322827 chr2L 9322893 9322923 11 92 30.0 23.0 26.5 0.4 126 chr2L 9322797 intergenic not near genes chr2L 9322860 intergenic not near genes chr2L 9322923 intergenic not near genes chr2L_11_9320001 chr2L_9320001 RAL-443 334 chr2L 9380227 9380252 chr2L 9380342 9380367 10 114 3.0 3.5 3.2 2.4 140 chr2L 9380227 exon Shawl - chr2L 9380297 intron Shawl - chr2L 9380367 intron Shawl - chr2L_10_9380001 chr2L_9380001 RAL-443 335 chr2L 9387231 9387267 chr2L 9387349 9387385 9 117 16.0 14.0 15.0 0.6 154 chr2L 9387231 intron Shawl - chr2L 9387308 intron Shawl - chr2L 9387385 intron Shawl - chr2L_9_9385001 chr2L_9385001 RAL-443 336 chr2L 9393478 9393528 chr2L 9396465 9396515 jockey 18 2984 9.0 12.0 10.5 1.6 3037 chr2L 9393478 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396515 intron Shawl - chr2L_18_9390001 chr2L_9390001 RAL-443 337 chr2L 9411425 9411477 chr2L 9411540 9411590 10 113 12.0 13.5 12.8 0.7 165 chr2L 9411425 intron Shawl - chr2L 9411508 intron Shawl - chr2L 9411590 intron Shawl - chr2L_10_9410001 chr2L_9410001 RAL-443 338 chr2L 9428487 9428533 chr2L 9428586 9428632 7 98 15.5 17.0 16.2 0.4 145 chr2L 9428487 exon CG42847 + chr2L 9428560 3` UTR CG42847 + chr2L 9428632 3` UTR CG42847 + chr2L_7_9425001 chr2L_9425001 RAL-443 339 chr2L 9443524 9443559 chr2L 9443654 9443693 5 133 4.0 10.0 7.0 0.6 169 chr2L 9443524 intron numb + chr2L 9443608 intron numb + chr2L 9443693 intron numb + chr2L_5_9440001 chr2L_9440001 RAL-443 340 chr2L 9454956 9455000 chr2L 9455078 9455122 13 122 14.5 9.5 12.0 1.0 166 chr2L 9454956 intron numb + chr2L 9455039 intron numb + chr2L 9455122 intron numb + chr2L_13_9455001 chr2L_9455001 RAL-443 341 chr2L 9474764 9474796 chr2L 9474878 9474910 13 113 7.5 5.0 6.2 1.8 146 chr2L 9474764 intergenic not near genes chr2L 9474837 intergenic not near genes chr2L 9474910 intergenic not near genes chr2L_13_9470001 chr2L_9470001 RAL-443 342 chr2L 9474798 9474809 chr2L 9474877 9474923 6 107 4.5 5.0 4.8 1.0 125 chr2L 9474798 intergenic not near genes chr2L 9474860 intergenic not near genes chr2L 9474923 intergenic not near genes chr2L_6_9470001 chr2L_9470001 RAL-443 343 chr2L 9495139 9495191 chr2L 9495255 9495307 9 115 22.0 17.5 19.8 0.4 168 chr2L 9495139 intergenic Gdi -,CG33298 + chr2L 9495223 intergenic CG33298 +,Gdi - chr2L 9495307 intergenic CG33298 +,Gdi - chr2L_9_9495001 chr2L_9495001 RAL-443 344 chr2L 9506409 9506459 chr2L 9506579 9506628 4 167 5.5 8.0 6.8 0.5 219 chr2L 9506409 intron CG33298 + chr2L 9506518 intron CG33298 + chr2L 9506628 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-443 345 chr2L 9532460 9532506 chr2L 9532584 9532600 4 114 5.0 7.5 6.2 0.6 140 chr2L 9532460 intron Oatp30B + chr2L 9532530 intron Oatp30B + chr2L 9532600 intron Oatp30B + chr2L_4_9530001 chr2L_9530001 RAL-443 346 chr2L 9593358 9593387 chr2L 9593442 9593481 5 88 8.0 11.0 9.5 0.5 123 chr2L 9593358 intergenic not near genes chr2L 9593420 intergenic not near genes chr2L 9593481 intergenic not near genes chr2L_5_9590001 chr2L_9590001 RAL-443 347 chr2L 9601654 9601846 chr2L 9601763 9601946 11 107 14.5 6.5 10.5 1.0 292 chr2L 9601654 intergenic not near genes chr2L 9601800 intergenic not near genes chr2L 9601946 intergenic not near genes chr2L_11_9600001 chr2L_9600001 RAL-443 348 chr2L 9610101 9610146 chr2L 9610199 9610217 4 92 12.0 9.0 10.5 0.3 116 chr2L 9610101 intron gcm2 + chr2L 9610159 intron gcm2 + chr2L 9610217 intron gcm2 + chr2L_4_9610001 chr2L_9610001 RAL-443 349 chr2L 9704835 9704898 chr2L 9704959 9705011 5 119 11.0 9.5 10.2 0.4 176 chr2L 9704835 intron,intron pelo +,CG31710 - chr2L 9704923 intron,intron pelo +,CG31710 - chr2L 9705011 intron,intron pelo +,CG31710 - chr2L_5_9700001 chr2L_9700001 RAL-443 350 chr2L 9756750 9756775 chr2L 9756879 9756904 8 127 12.0 11.0 11.5 0.6 154 chr2L 9756750 intergenic not near genes chr2L 9756827 intergenic not near genes chr2L 9756904 intergenic not near genes chr2L_8_9755001 chr2L_9755001 RAL-443 351 chr2L 9770748 9770778 chr2L 9770871 9770898 1360 9 123 4.5 2.5 3.5 2.0 150 chr2L 9770748 intron ppk18 - chr2L 9770823 intron ppk18 - chr2L 9770898 exon ppk18 - chr2L_9_9770001 chr2L_9770001 RAL-443 352 chr2L 9775971 9776006 chr2L 9776073 9776108 11 101 15.0 19.5 17.2 0.6 137 chr2L 9775971 intergenic not near genes chr2L 9776040 intergenic not near genes chr2L 9776108 intergenic not near genes chr2L_11_9775001 chr2L_9775001 RAL-443 353 chr2L 9829571 9829602 chr2L 9829793 9829818 12 220 13.5 12.0 12.8 0.9 247 chr2L 9829571 intron nAChRalpha6 - chr2L 9829694 intron nAChRalpha6 - chr2L 9829818 intron nAChRalpha6 - chr2L_12_9825001 chr2L_9825001 RAL-443 354 chr2L 9837412 9837429 chr2L 9837510 9837518 4 92 7.5 9.0 8.2 0.4 106 chr2L 9837412 intron nAChRalpha6 - chr2L 9837465 intron nAChRalpha6 - chr2L 9837518 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-443 355 chr2L 9871508 9871560 chr2L 9871615 9871669 14 106 1.5 1.5 1.5 5.6 161 chr2L 9871508 intron nAChRalpha6 - chr2L 9871588 intron nAChRalpha6 - chr2L 9871669 intron nAChRalpha6 - chr2L_14_9870001 chr2L_9870001 RAL-443 356 chr2L 9892490 9892530 chr2L 9892586 9892616 7 90 8.5 5.5 7.0 0.9 126 chr2L 9892490 intron mtDNA-helicase - chr2L 9892553 intron mtDNA-helicase - chr2L 9892616 intron mtDNA-helicase - chr2L_7_9890001 chr2L_9890001 RAL-443 357 chr2L 9905502 9905529 chr2L 9905631 9905658 5 129 19.5 18.0 18.8 0.3 156 chr2L 9905502 intron CG13124 - chr2L 9905580 intron CG13124 - chr2L 9905658 intron CG13124 - chr2L_5_9905001 chr2L_9905001 RAL-443 358 chr2L 9973710 9973729 chr2L 9980846 9980850 HMS-Beagle 5 7131 6.0 3.0 4.5 0.9 7140 chr2L 9973710 intergenic not near genes chr2L 9977280 intergenic not near genes chr2L 9980850 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-443 359 chr2L 9973730 9973757 chr2L 9980844 9980896 HMS-Beagle 8 7124 3.5 2.5 3.0 2.0 7166 chr2L 9973730 intergenic not near genes chr2L 9977313 intergenic not near genes chr2L 9980896 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-443 360 chr2L 9982015 9982230 chr2L 9982114 9982353 17 115 17.5 19.0 18.2 0.9 338 chr2L 9982015 intergenic not near genes chr2L 9982184 intergenic not near genes chr2L 9982353 intergenic not near genes chr2L_17_9980001 chr2L_9980001 RAL-443 361 chr2L 10023080 10023102 chr2L 10023172 10023194 4 98 7.0 12.5 9.8 0.4 114 chr2L 10023080 intergenic not near genes chr2L 10023137 intergenic not near genes chr2L 10023194 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-443 362 chr2L 10045407 10045428 chr2L 10045494 10045523 5 95 3.5 3.0 3.2 1.2 116 chr2L 10045407 intergenic not near genes chr2L 10045465 intergenic not near genes chr2L 10045523 intergenic not near genes chr2L_5_10045001 chr2L_10045001 RAL-443 363 chr2L 10050380 10050414 chr2L 10050473 10050480 8 86 12.5 14.0 13.2 0.6 100 chr2L 10050380 exon CG33301 + chr2L 10050430 exon CG33301 + chr2L 10050480 exon CG33301 + chr2L_8_10050001 chr2L_10050001 RAL-443 364 chr2L 10051719 10051749 chr2L 10051809 10051854 7 91 3.5 1.0 2.2 2.2 135 chr2L 10051719 5` UTR CR44874 + chr2L 10051786 5` UTR CR44874 + chr2L 10051854 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-443 365 chr2L 10095609 10095662 chr2L 10095709 10095762 18 99 15.0 17.0 16.0 1.1 153 chr2L 10095609 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095762 intron CG44153 - chr2L_18_10095001 chr2L_10095001 RAL-443 366 chr2L 10112712 10112742 chr2L 10112824 10112851 9 112 12.0 12.0 12.0 0.7 139 chr2L 10112712 intron,intron CG44153 -,CG34109 + chr2L 10112782 intron,intron CG44153 -,CG34109 + chr2L 10112851 intron,intron CG44153 -,CG34109 + chr2L_9_10110001 chr2L_10110001 RAL-443 367 chr2L 10131494 10131516 chr2L 10131575 10131613 4 94 15.5 14.0 14.8 0.3 119 chr2L 10131494 intron CG44153 - chr2L 10131554 intron CG44153 - chr2L 10131613 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-443 368 chr2L 10153186 10153233 chr2L 10153285 10153332 4 87 4.5 6.0 5.2 0.6 146 chr2L 10153186 intron,exon CG44153 -,CG4839 + chr2L 10153259 intron,intron CG44153 -,CG4839 + chr2L 10153332 intron,exon CG44153 -,CG4839 + chr2L_4_10150001 chr2L_10150001 RAL-443 369 chr2L 10156301 10156348 chr2L 10163791 10163795 blood 10 7477 6.0 4.0 5.0 1.7 7494 chr2L 10156301 intron,3` UTR CG44153 -,CG4839 + chr2L 10160048 intron CG44153 - chr2L 10163795 intron CG44153 - chr2L_10_10160001 chr2L_10160001 RAL-443 370 chr2L 10232916 10232943 chr2L 10233014 10233040 9 97 13.5 14.5 14.0 0.6 124 chr2L 10232916 intron eEF1delta + chr2L 10232978 intron eEF1delta + chr2L 10233040 intron eEF1delta + chr2L_9_10230001 chr2L_10230001 RAL-443 371 chr2L 10258411 10258431 chr2L 10258516 10258536 6 105 6.5 3.0 4.8 1.0 125 chr2L 10258411 intron Pten - chr2L 10258474 intron Pten - chr2L 10258536 intron Pten - chr2L_6_10255001 chr2L_10255001 RAL-443 372 chr2L 10276182 10276222 chr2L 10276280 10276320 9 95 13.5 13.5 13.5 0.6 138 chr2L 10276182 intron Utx - chr2L 10276251 intron Utx - chr2L 10276320 intron Utx - chr2L_9_10275001 chr2L_10275001 RAL-443 373 chr2L 10294160 10294192 chr2L 10294256 10294279 6 94 13.5 13.5 13.5 0.4 119 chr2L 10294160 intron Hand - chr2L 10294220 intron Hand - chr2L 10294279 intron Hand - chr2L_6_10290001 chr2L_10290001 RAL-443 374 chr2L 10294659 10294689 chr2L 10294765 10294790 6 105 17.5 20.0 18.8 0.3 131 chr2L 10294659 intron Hand - chr2L 10294724 intron Hand - chr2L 10294790 intron Hand - chr2L_6_10290001 chr2L_10290001 RAL-443 375 chr2L 10314493 10314528 chr2L 10314622 10314657 10 129 17.5 20.5 19.0 0.5 164 chr2L 10314493 intergenic CG5384 -,CG4972 + chr2L 10314575 intergenic CG5384 -,CG4972 + chr2L 10314657 intergenic CG4972 +,CG5384 - chr2L_10_10310001 chr2L_10310001 RAL-443 376 chr2L 10348378 10348412 chr2L 10348481 10348515 10 102 11.5 6.5 9.0 1.0 137 chr2L 10348378 intron CG34367 - chr2L 10348446 intron CG34367 - chr2L 10348515 intron CG34367 - chr2L_10_10345001 chr2L_10345001 RAL-443 377 chr2L 10387574 10387600 chr2L 10387690 10387716 6 113 22.0 19.0 20.5 0.3 142 chr2L 10387574 3` UTR mRpS7 + chr2L 10387645 3` UTR mRpS7 + chr2L 10387716 intergenic mRpS7 +,da + chr2L_6_10385001 chr2L_10385001 RAL-443 378 chr2L 10407725 10407771 chr2L 10407826 10407872 9 99 9.5 10.5 10.0 0.8 147 chr2L 10407725 intron Ir31a + chr2L 10407798 intron Ir31a + chr2L 10407872 exon Ir31a + chr2L_9_10405001 chr2L_10405001 RAL-443 379 chr2L 10458201 10458219 chr2L 10458317 10458335 7 113 1.0 2.0 1.5 2.8 134 chr2L 10458201 intron LM408 + chr2L 10458268 intron LM408 + chr2L 10458335 intron LM408 + chr2L_7_10455001 chr2L_10455001 RAL-443 380 chr2L 10500042 10500083 chr2L 10500148 10500172 5 103 15.5 12.5 14.0 0.3 130 chr2L 10500042 intron Myo31DF - chr2L 10500107 intron Myo31DF - chr2L 10500172 intron Myo31DF - chr2L_5_10500001 chr2L_10500001 RAL-443 381 chr2L 10518923 10518967 chr2L 10519021 10519061 19 97 20.5 18.5 19.5 0.9 138 chr2L 10518923 3` UTR Lrr47 + chr2L 10518992 3` UTR Lrr47 + chr2L 10519061 3` UTR Lrr47 + chr2L_19_10515001 chr2L_10515001 RAL-443 382 chr2L 10531595 10531622 chr2L 10531707 10531734 8 111 0.0 8.5 4.2 1.5 139 chr2L 10531595 3` UTR Lip4 + chr2L 10531664 3` UTR Lip4 + chr2L 10531734 3` UTR Lip4 + chr2L_8_10530001 chr2L_10530001 RAL-443 383 chr2L 10531623 10531643 chr2L 10531704 10531750 5 99 0.0 8.0 4.0 1.0 127 chr2L 10531623 3` UTR Lip4 + chr2L 10531686 3` UTR Lip4 + chr2L 10531750 3` UTR Lip4 + chr2L_5_10530001 chr2L_10530001 RAL-443 384 chr2L 10540850 10540873 chr2L 10540948 10540962 4 94 6.0 6.5 6.2 0.6 112 chr2L 10540850 intergenic not near genes chr2L 10540906 intergenic not near genes chr2L 10540962 intergenic not near genes chr2L_4_10540001 chr2L_10540001 RAL-443 385 chr2L 10589051 10589081 chr2L 10589147 10589177 7 96 16.5 18.0 17.2 0.4 126 chr2L 10589051 intron Trim9 + chr2L 10589114 intron Trim9 + chr2L 10589177 intron Trim9 + chr2L_7_10585001 chr2L_10585001 RAL-443 386 chr2L 10592821 10592831 chr2L 10600503 10600508 opus 4 7680 2.0 2.5 2.2 1.2 7687 chr2L 10592821 intron Trim9 + chr2L 10596664 intron Trim9 + chr2L 10600508 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-443 387 chr2L 10592837 10592868 chr2L 10600502 10600550 opus 11 7675 1.5 2.5 2.0 3.7 7713 chr2L 10592837 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600550 intron Trim9 + chr2L_11_10595001 chr2L_10595001 RAL-443 388 chr2L 10603232 10603263 chr2L 10603348 10603357 5 113 9.0 16.0 12.5 0.4 125 chr2L 10603232 intron Trim9 + chr2L 10603294 intron Trim9 + chr2L 10603357 intron Trim9 + chr2L_5_10600001 chr2L_10600001 RAL-443 389 chr2L 10631195 10631219 chr2L 10631347 10631371 9 152 11.5 16.5 14.0 0.6 176 chr2L 10631195 intron CG7329 - chr2L 10631283 intron CG7329 - chr2L 10631371 intron CG7329 - chr2L_9_10630001 chr2L_10630001 RAL-443 390 chr2L 10653251 10653291 chr2L 10653367 10653402 10 111 13.5 16.0 14.8 0.6 151 chr2L 10653251 exon CG17098 + chr2L 10653326 intron CG17098 + chr2L 10653402 intron CG17098 + chr2L_10_10650001 chr2L_10650001 RAL-443 391 chr2L 10656574 10656610 chr2L 10656670 10656706 18 96 3.0 6.5 4.8 3.1 132 chr2L 10656574 intergenic not near genes chr2L 10656640 intergenic not near genes chr2L 10656706 intergenic not near genes chr2L_18_10655001 chr2L_10655001 RAL-443 392 chr2L 10685584 10685625 chr2L 10685687 10685713 13 96 13.5 12.0 12.8 0.9 129 chr2L 10685584 intergenic not near genes chr2L 10685648 intergenic CG7296 - chr2L 10685713 intergenic CG7296 - chr2L_13_10685001 chr2L_10685001 RAL-443 393 chr2L 10688530 10688574 chr2L 10688616 10688639 7 83 14.5 17.0 15.8 0.4 109 chr2L 10688530 intergenic CG7294 - chr2L 10688584 intergenic CG7294 - chr2L 10688639 intergenic CG7294 - chr2L_7_10685001 chr2L_10685001 RAL-443 394 chr2L 10703298 10703347 chr2L 10703406 10703410 8 100 17.5 22.0 19.8 0.4 112 chr2L 10703298 intron Lip2 - chr2L 10703354 intron Lip2 - chr2L 10703410 intron Lip2 - chr2L_8_10700001 chr2L_10700001 RAL-443 395 chr2L 10723523 10723545 chr2L 10723631 10723659 5 112 4.0 7.5 5.8 0.7 136 chr2L 10723523 intergenic not near genes chr2L 10723591 intergenic not near genes chr2L 10723659 intergenic not near genes chr2L_5_10720001 chr2L_10720001 RAL-443 396 chr2L 10727007 10727276 chr2L 10727126 10727407 6 125 8.0 9.0 8.5 0.6 400 chr2L 10727007 intron CG6431 + chr2L 10727207 intron CG6431 + chr2L 10727407 intron CG6431 + chr2L_6_10725001 chr2L_10725001 RAL-443 397 chr2L 10751291 10751300 chr2L 10751389 10751393 4 96 7.0 8.5 7.8 0.5 102 chr2L 10751291 intron CG17124 - chr2L 10751342 intron CG17124 - chr2L 10751393 intron CG17124 - chr2L_4_10750001 chr2L_10750001 RAL-443 398 chr2L 10751301 10751338 chr2L 10751384 10751436 12 90 6.5 8.5 7.5 1.4 135 chr2L 10751301 intron CG17124 - chr2L 10751368 intron CG17124 - chr2L 10751436 intron CG17124 - chr2L_12_10750001 chr2L_10750001 RAL-443 399 chr2L 10787886 10788082 chr2L 10787967 10788196 17 105 14.0 15.5 14.8 1.1 310 chr2L 10787886 intron CG31869 - chr2L 10788041 intron CG31869 - chr2L 10788196 intron CG31869 - chr2L_17_10785001 chr2L_10785001 RAL-443 400 chr2L 10793312 10793328 chr2L 10793409 10793425 6 97 16.0 10.5 13.2 0.4 113 chr2L 10793312 intron CG31869 - chr2L 10793368 intron CG31869 - chr2L 10793425 intron CG31869 - chr2L_6_10790001 chr2L_10790001 RAL-443 401 chr2L 10793329 10793350 chr2L 10793406 10793435 4 89 14.0 10.5 12.2 0.3 106 chr2L 10793329 intron CG31869 - chr2L 10793382 intron CG31869 - chr2L 10793435 intron CG31869 - chr2L_4_10790001 chr2L_10790001 RAL-443 402 chr2L 10803771 10803801 chr2L 10803877 10803907 6 106 12.5 13.5 13.0 0.4 136 chr2L 10803771 intergenic not near genes chr2L 10803839 intergenic Nos - chr2L 10803907 intergenic Nos - chr2L_6_10800001 chr2L_10800001 RAL-443 403 chr2L 10813679 10813699 chr2L 10813823 10813871 5 166 18.5 14.5 16.5 0.3 192 chr2L 10813679 intron Nos - chr2L 10813775 intron Nos - chr2L 10813871 intron Nos - chr2L_5_10810001 chr2L_10810001 RAL-443 404 chr2L 10836317 10836349 chr2L 10836418 10836450 7 99 12.5 13.0 12.8 0.5 133 chr2L 10836317 intron Nos - chr2L 10836384 intron Nos - chr2L 10836450 intron Nos - chr2L_7_10835001 chr2L_10835001 RAL-443 405 chr2L 10852149 10852177 chr2L 10852258 10852276 11 105 11.0 11.0 11.0 0.9 127 chr2L 10852149 intron CG43129 + chr2L 10852212 intron CG43129 + chr2L 10852276 intron CG43129 + chr2L_11_10850001 chr2L_10850001 RAL-443 406 chr2L 10862832 10862859 chr2L 10864461 10864493 Rt1c 5 1627 5.0 3.5 4.2 1.0 1661 chr2L 10862832 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864493 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-443 407 chr2L 10862867 10862880 chr2L 10864456 10864478 Rt1c 4 1595 4.0 2.5 3.2 1.0 1611 chr2L 10862867 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864478 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-443 408 chr2L 10939775 10939788 chr2L 10939861 10939889 4 96 19.5 18.5 19.0 0.2 114 chr2L 10939775 intron dpr2 - chr2L 10939832 intron dpr2 - chr2L 10939889 intron dpr2 - chr2L_4_10935001 chr2L_10935001 RAL-443 409 chr2L 10946950 10946976 chr2L 10956165 10956206 roo 7 9224 1.5 4.5 3.0 1.8 9256 chr2L 10946950 intron dpr2 - chr2L 10951578 intron dpr2 - chr2L 10956206 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-443 410 chr2L 11169570 11169589 chr2L 11169672 11169687 4 101 13.0 18.5 15.8 0.2 117 chr2L 11169570 intron Ca-beta - chr2L 11169628 intron Ca-beta - chr2L 11169687 intron Ca-beta - chr2L_4_11165001 chr2L_11165001 RAL-443 411 chr2L 11189230 11189241 chr2L 11189347 11189358 5 116 20.0 14.5 17.2 0.3 128 chr2L 11189230 intron Ca-beta - chr2L 11189294 intron Ca-beta - chr2L 11189358 intron Ca-beta - chr2L_5_11185001 chr2L_11185001 RAL-443 412 chr2L 11224035 11224091 chr2L 11224166 11224222 16 127 20.0 19.0 19.5 0.8 187 chr2L 11224035 intron ab + chr2L 11224128 intron ab + chr2L 11224222 intron ab + chr2L_16_11220001 chr2L_11220001 RAL-443 413 chr2L 11292355 11292397 chr2L 11292457 11292494 11 99 5.0 7.5 6.2 1.5 139 chr2L 11292355 intergenic not near genes chr2L 11292424 intergenic not near genes chr2L 11292494 intergenic not near genes chr2L_11_11290001 chr2L_11290001 RAL-443 414 chr2L 11298811 11298853 chr2L 11298908 11298950 11 96 8.0 7.5 7.8 1.2 139 chr2L 11298811 intergenic not near genes chr2L 11298880 intergenic not near genes chr2L 11298950 intergenic not near genes chr2L_11_11295001 chr2L_11295001 RAL-443 415 chr2L 11313112 11313136 chr2L 11313186 11313215 4 85 8.0 6.0 7.0 0.5 103 chr2L 11313112 intergenic not near genes chr2L 11313164 intergenic not near genes chr2L 11313215 intergenic not near genes chr2L_4_11310001 chr2L_11310001 RAL-443 416 chr2L 11335694 11335712 chr2L 11335780 11335810 7 96 16.5 13.5 15.0 0.4 116 chr2L 11335694 intergenic not near genes chr2L 11335752 intergenic not near genes chr2L 11335810 intergenic not near genes chr2L_7_11335001 chr2L_11335001 RAL-443 417 chr2L 11356387 11356423 chr2L 11356518 11356554 5 126 5.5 8.0 6.8 0.6 167 chr2L 11356387 intergenic not near genes chr2L 11356470 intergenic not near genes chr2L 11356554 intergenic not near genes chr2L_5_11355001 chr2L_11355001 RAL-443 418 chr2L 11357957 11358013 chr2L 11358055 11358110 16 97 12.0 12.0 12.0 1.2 153 chr2L 11357957 intergenic not near genes chr2L 11358034 intergenic not near genes chr2L 11358110 intergenic not near genes chr2L_16_11355001 chr2L_11355001 RAL-443 419 chr2L 11385853 11385872 chr2L 11385974 11385988 4 131 8.5 4.0 6.2 0.6 135 chr2L 11385853 intergenic not near genes chr2L 11385920 intergenic not near genes chr2L 11385988 intergenic not near genes chr2L_4_11385001 chr2L_11385001 RAL-443 420 chr2L 11397241 11397265 chr2L 11397314 11397345 5 86 10.5 9.0 9.8 0.5 104 chr2L 11397241 intergenic not near genes chr2L 11397293 intergenic not near genes chr2L 11397345 intergenic not near genes chr2L_5_11395001 chr2L_11395001 RAL-443 421 chr2L 11450110 11450151 chr2L 11450216 11450253 9 105 0.0 4.0 2.0 3.0 143 chr2L 11450110 intergenic not near genes chr2L 11450182 intergenic not near genes chr2L 11450253 intergenic not near genes chr2L_9_11450001 chr2L_11450001 RAL-443 422 chr2L 11496622 11496653 chr2L 11496720 11496751 6 98 12.0 11.0 11.5 0.5 129 chr2L 11496622 intergenic CG6488 - chr2L 11496686 intergenic CG6488 - chr2L 11496751 intergenic CG6488 - chr2L_6_11495001 chr2L_11495001 RAL-443 423 chr2L 11535297 11535327 chr2L 11535475 11535492 4 181 15.5 18.0 16.8 0.2 195 chr2L 11535297 intergenic not near genes chr2L 11535394 intergenic not near genes chr2L 11535492 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-443 424 chr2L 11537736 11537772 chr2L 11537873 11537908 6 135 12.0 19.5 15.8 0.4 172 chr2L 11537736 intergenic not near genes chr2L 11537822 intergenic not near genes chr2L 11537908 intergenic not near genes chr2L_6_11535001 chr2L_11535001 RAL-443 425 chr2L 11540322 11540348 chr2L 11540502 11540523 8 175 15.5 21.5 18.5 0.4 201 chr2L 11540322 intergenic not near genes chr2L 11540422 intergenic not near genes chr2L 11540523 intergenic not near genes chr2L_8_11540001 chr2L_11540001 RAL-443 426 chr2L 11540593 11540615 chr2L 11548015 11548037 Tabor 8 7422 4.5 11.0 7.8 0.9 7444 chr2L 11540593 intergenic not near genes chr2L 11544315 intergenic not near genes chr2L 11548037 intergenic not near genes chr2L_8_11540001 chr2L_11540001 RAL-443 427 chr2L 11550611 11550667 chr2L 11550720 11550776 6 109 6.5 8.0 7.2 0.7 165 chr2L 11550611 intergenic not near genes chr2L 11550694 intergenic not near genes chr2L 11550776 intergenic not near genes chr2L_6_11550001 chr2L_11550001 RAL-443 428 chr2L 11563629 11563651 chr2L 11568853 11568875 copia 5 5222 3.5 10.0 6.8 0.6 5246 chr2L 11563629 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568875 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-443 429 chr2L 11563655 11563668 chr2L 11568852 11568882 copia 4 5214 2.0 9.5 5.8 0.6 5227 chr2L 11563655 intergenic not near genes chr2L 11566268 intergenic not near genes chr2L 11568882 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-443 430 chr2L 11579593 11579629 chr2L 11579703 11579707 4 100 9.0 1.0 5.0 0.7 114 chr2L 11579593 intergenic not near genes chr2L 11579650 intergenic not near genes chr2L 11579707 intergenic not near genes chr2L_4_11575001 chr2L_11575001 RAL-443 431 chr2L 11612651 11612698 chr2L 11612759 11612781 9 105 10.5 12.5 11.5 0.7 130 chr2L 11612651 intron kek2 + chr2L 11612716 intron kek2 + chr2L 11612781 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-443 432 chr2L 11618531 11618574 chr2L 11618642 11618685 11 108 4.0 1.0 2.5 3.1 154 chr2L 11618531 intron kek2 + chr2L 11618608 intron kek2 + chr2L 11618685 intron kek2 + chr2L_11_11615001 chr2L_11615001 RAL-443 433 chr2L 11672118 11672164 chr2L 11672245 11672291 13 120 11.5 13.0 12.2 1.0 173 chr2L 11672118 intergenic not near genes chr2L 11672204 intergenic not near genes chr2L 11672291 intergenic not near genes chr2L_13_11670001 chr2L_11670001 RAL-443 434 chr2L 11698213 11698225 chr2L 11698576 11698589 4 364 5.0 15.0 10.0 0.4 376 chr2L 11698213 intergenic not near genes chr2L 11698401 intergenic not near genes chr2L 11698589 intergenic not near genes chr2L_4_11695001 chr2L_11695001 RAL-443 435 chr2L 11713496 11713523 chr2L 11720984 11721011 blood 9 7487 5.0 5.0 5.0 1.5 7515 chr2L 11713496 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721011 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-443 436 chr2L 11752856 11752881 chr2L 11753166 11753174 4 303 9.0 21.0 15.0 0.2 318 chr2L 11752856 intergenic CG42470 - chr2L 11753015 3` UTR CG42470 - chr2L 11753174 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-443 437 chr2L 11841347 11841395 chr2L 11841445 11841493 13 96 13.5 12.5 13.0 0.9 146 chr2L 11841347 intron Pde1c - chr2L 11841420 intron Pde1c - chr2L 11841493 intron Pde1c - chr2L_13_11840001 chr2L_11840001 RAL-443 438 chr2L 11892525 11892794 chr2L 11892634 11892902 8 106 12.0 3.5 7.8 0.9 377 chr2L 11892525 intron Pde1c - chr2L 11892714 intron Pde1c - chr2L 11892902 intron Pde1c - chr2L_8_11890001 chr2L_11890001 RAL-443 439 chr2L 11932155 11932171 chr2L 11932254 11932261 4 97 15.5 17.0 16.2 0.2 106 chr2L 11932155 intergenic not near genes chr2L 11932208 intergenic not near genes chr2L 11932261 intergenic not near genes chr2L_4_11930001 chr2L_11930001 RAL-443 440 chr2L 11947359 11947395 chr2L 11947456 11947492 6 96 19.0 24.0 21.5 0.3 133 chr2L 11947359 intergenic Cry + chr2L 11947426 intergenic Cry + chr2L 11947492 intergenic Cry +,CG16964 + chr2L_6_11945001 chr2L_11945001 RAL-443 441 chr2L 11951316 11951354 chr2L 11951433 11951471 6 117 13.5 9.5 11.5 0.5 155 chr2L 11951316 intergenic not near genes chr2L 11951394 intergenic not near genes chr2L 11951471 intergenic not near genes chr2L_6_11950001 chr2L_11950001 RAL-443 442 chr2L 11951957 11951996 chr2L 11952058 11952098 10 106 12.5 13.5 13.0 0.7 141 chr2L 11951957 intergenic CR43314 - chr2L 11952028 intergenic CR43314 - chr2L 11952098 intergenic CR43314 - chr2L_10_11950001 chr2L_11950001 RAL-443 443 chr2L 11976071 11976106 chr2L 11976168 11976202 12 95 20.0 11.0 15.5 0.7 131 chr2L 11976071 intergenic not near genes chr2L 11976136 intergenic not near genes chr2L 11976202 intergenic not near genes chr2L_12_11975001 chr2L_11975001 RAL-443 444 chr2L 12067313 12067357 chr2L 12074385 12074429 297 14 7070 3.5 6.5 5.0 2.3 7116 chr2L 12067313 intergenic not near genes chr2L 12070871 intergenic not near genes chr2L 12074429 intergenic not near genes chr2L_14_12070001 chr2L_12070001 RAL-443 445 chr2L 12117427 12117439 chr2L 12117528 12117534 8 100 21.0 21.5 21.2 0.4 107 chr2L 12117427 intron CG17211 + chr2L 12117480 intron CG17211 + chr2L 12117534 intron CG17211 + chr2L_8_12115001 chr2L_12115001 RAL-443 446 chr2L 12117441 12117467 chr2L 12117521 12117568 7 96 19.0 21.5 20.2 0.3 127 chr2L 12117441 intron CG17211 + chr2L 12117504 intron CG17211 + chr2L 12117568 intron CG17211 + chr2L_7_12115001 chr2L_12115001 RAL-443 447 chr2L 12121882 12121920 chr2L 12121984 12122017 11 101 16.5 18.5 17.5 0.6 135 chr2L 12121882 intron CG17211 + chr2L 12121950 intron CG17211 + chr2L 12122017 intron CG17211 + chr2L_11_12120001 chr2L_12120001 RAL-443 448 chr2L 12131467 12131496 chr2L 12131566 12131612 6 113 21.5 20.0 20.8 0.3 145 chr2L 12131467 intron rho-6 - chr2L 12131540 intron rho-6 - chr2L 12131612 intron rho-6 - chr2L_6_12130001 chr2L_12130001 RAL-443 449 chr2L 12132709 12132740 chr2L 12132815 12132846 7 105 15.0 9.0 12.0 0.5 137 chr2L 12132709 intron rho-6 - chr2L 12132778 intron rho-6 - chr2L 12132846 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-443 450 chr2L 12175832 12175844 chr2L 12175934 12175946 4 102 13.5 16.0 14.8 0.3 114 chr2L 12175832 intron,intron aret +,atilla - chr2L 12175889 intron,intron aret +,atilla - chr2L 12175946 intron,intron aret +,atilla - chr2L_4_12175001 chr2L_12175001 RAL-443 451 chr2L 12179759 12179776 chr2L 12179865 12179882 5 106 9.0 8.5 8.8 0.5 123 chr2L 12179759 intron aret + chr2L 12179820 intron aret + chr2L 12179882 intron aret + chr2L_5_12175001 chr2L_12175001 RAL-443 452 chr2L 12239052 12239087 chr2L 12239154 12239184 7 103 20.5 16.5 18.5 0.4 132 chr2L 12239052 intron aret + chr2L 12239118 intron aret + chr2L 12239184 intron aret + chr2L_7_12235001 chr2L_12235001 RAL-443 453 chr2L 12272162 12272191 chr2L 12272252 12272287 9 95 19.0 27.5 23.2 0.4 125 chr2L 12272162 intron aret + chr2L 12272224 intron aret + chr2L 12272287 intron aret + chr2L_9_12270001 chr2L_12270001 RAL-443 454 chr2L 12278915 12278951 chr2L 12279015 12279051 10 96 12.0 16.5 14.2 0.7 136 chr2L 12278915 exon aret + chr2L 12278983 intron aret + chr2L 12279051 intron aret + chr2L_10_12275001 chr2L_12275001 RAL-443 455 chr2L 12294239 12294277 chr2L 12294341 12294379 6 101 12.0 10.0 11.0 0.5 140 chr2L 12294239 intron aret + chr2L 12294309 intron aret + chr2L 12294379 intron aret + chr2L_6_12290001 chr2L_12290001 RAL-443 456 chr2L 12321216 12321248 chr2L 12321313 12321346 5 98 10.5 7.0 8.8 0.5 130 chr2L 12321216 intergenic not near genes chr2L 12321281 intergenic not near genes chr2L 12321346 intergenic not near genes chr2L_5_12320001 chr2L_12320001 RAL-443 457 chr2L 12366842 12366892 chr2L 12366948 12366998 15 106 5.5 4.5 5.0 2.5 156 chr2L 12366842 intron bru-2 + chr2L 12366920 intron bru-2 + chr2L 12366998 intron bru-2 + chr2L_15_12365001 chr2L_12365001 RAL-443 458 chr2L 12384915 12384955 chr2L 12385020 12385060 15 105 13.5 19.0 16.2 0.9 145 chr2L 12384915 intron bru-2 + chr2L 12384988 intron bru-2 + chr2L 12385060 intron bru-2 + chr2L_15_12380001 chr2L_12380001 RAL-443 459 chr2L 12394944 12394999 chr2L 12395058 12395131 5 128 11.5 8.0 9.8 0.5 187 chr2L 12394944 intron bru-2 + chr2L 12395038 intron bru-2 + chr2L 12395131 intron bru-2 + chr2L_5_12395001 chr2L_12395001 RAL-443 460 chr2L 12408927 12408969 chr2L 12409038 12409080 8 109 15.0 17.0 16.0 0.5 153 chr2L 12408927 intron vir-1 - chr2L 12409004 intron vir-1 - chr2L 12409080 intron vir-1 - chr2L_8_12405001 chr2L_12405001 RAL-443 461 chr2L 12413824 12413857 chr2L 12414085 12414118 5 261 4.5 4.0 4.2 1.0 294 chr2L 12413824 intron vir-1 - chr2L 12413971 intron vir-1 - chr2L 12414118 intron vir-1 - chr2L_5_12410001 chr2L_12410001 RAL-443 462 chr2L 12424346 12424380 chr2L 12424442 12424476 5 96 0.5 4.0 2.2 1.6 130 chr2L 12424346 intergenic not near genes chr2L 12424411 intergenic CG6405 + chr2L 12424476 intergenic CG6405 + chr2L_5_12420001 chr2L_12420001 RAL-443 463 chr2L 12470726 12470771 chr2L 12470823 12470847 6 89 14.5 12.5 13.5 0.4 121 chr2L 12470726 intron bun - chr2L 12470786 intron bun - chr2L 12470847 intron bun - chr2L_6_12470001 chr2L_12470001 RAL-443 464 chr2L 12487878 12487885 chr2L 12487979 12487995 4 106 9.5 7.5 8.5 0.4 117 chr2L 12487878 intron bun - chr2L 12487936 intron bun - chr2L 12487995 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-443 465 chr2L 12487893 12487919 chr2L 12487967 12487987 14 91 2.0 5.5 3.8 2.9 94 chr2L 12487893 intron bun - chr2L 12487940 intron bun - chr2L 12487987 intron bun - chr2L_14_12485001 chr2L_12485001 RAL-443 466 chr2L 12510122 12510141 chr2L 12510214 12510228 4 88 12.5 9.0 10.8 0.3 106 chr2L 12510122 intron bun - chr2L 12510175 intron bun - chr2L 12510228 intron bun - chr2L_4_12510001 chr2L_12510001 RAL-443 467 chr2L 12515838 12515874 chr2L 12515935 12515971 6 97 9.0 11.5 10.2 0.5 133 chr2L 12515838 intron bun - chr2L 12515904 intron bun - chr2L 12515971 intron bun - chr2L_6_12515001 chr2L_12515001 RAL-443 468 chr2L 12529233 12529260 chr2L 12529381 12529432 5 160 10.5 11.0 10.8 0.4 199 chr2L 12529233 intron bun - chr2L 12529332 intron bun - chr2L 12529432 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-443 469 chr2L 12558325 12558328 chr2L 12565465 12565470 HMS-Beagle 4 7145 6.5 10.0 8.2 0.4 7145 chr2L 12558325 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565470 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-443 470 chr2L 12558340 12558353 chr2L 12565452 12565502 HMS-Beagle 4 7140 1.5 7.0 4.2 0.8 7162 chr2L 12558340 intergenic not near genes chr2L 12561921 intergenic not near genes chr2L 12565502 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-443 471 chr2L 12583486 12583507 chr2L 12583598 12583619 8 111 10.0 5.0 7.5 0.9 133 chr2L 12583486 5` UTR CR44595 + chr2L 12583552 intergenic CR44595 + chr2L 12583619 intergenic CR44595 + chr2L_8_12580001 chr2L_12580001 RAL-443 472 chr2L 12656151 12656194 chr2L 12656318 12656350 5 168 22.0 24.5 23.2 0.2 199 chr2L 12656151 intergenic not near genes chr2L 12656250 intergenic not near genes chr2L 12656350 intergenic not near genes chr2L_5_12655001 chr2L_12655001 RAL-443 473 chr2L 12693821 12693859 chr2L 12693918 12693942 19 94 5.0 1.5 3.2 4.5 121 chr2L 12693821 exon CG6153 + chr2L 12693882 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693942 3` UTR CG5780 - chr2L_19_12690001 chr2L_12690001 RAL-443 474 chr2L 12728901 12728934 chr2L 12729162 12729195 pogo 9 261 6.0 0.5 3.2 2.1 294 chr2L 12728901 intron MRP + chr2L 12729048 intron MRP + chr2L 12729195 exon MRP + chr2L_9_12725001 chr2L_12725001 RAL-443 475 chr2L 12731036 12731090 chr2L 12735823 12735867 F-element 25 4784 6.5 9.0 7.8 2.8 4831 chr2L 12731036 intron MRP + chr2L 12733452 intron MRP + chr2L 12735867 intron MRP + chr2L_25_12730001 chr2L_12730001 RAL-443 476 chr2L 12739173 12739198 chr2L 12743963 12743999 Doc 9 4798 4.5 3.0 3.8 1.9 4826 chr2L 12739173 exon MRP + chr2L 12741586 intron MRP + chr2L 12743999 exon MRP + chr2L_9_12740001 chr2L_12740001 RAL-443 477 chr2L 12763815 12763864 chr2L 12764047 12764084 BS 4 221 1.5 1.5 1.5 1.6 269 chr2L 12763815 intergenic not near genes chr2L 12763950 intergenic not near genes chr2L 12764084 intergenic not near genes chr2L_4_12760001 chr2L_12760001 RAL-443 478 chr2L 12781785 12781815 chr2L 12789248 12789265 Quasimodo 10 7464 9.0 4.0 6.5 1.3 7480 chr2L 12781785 intergenic not near genes chr2L 12785525 intergenic not near genes chr2L 12789265 intergenic not near genes chr2L_10_12785001 chr2L_12785001 RAL-443 479 chr2L 12791610 12791637 chr2L 12795284 12795301 F-element 15 3687 4.5 7.5 6.0 2.1 3691 chr2L 12791610 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795301 intergenic not near genes chr2L_15_12790001 chr2L_12790001 RAL-443 480 chr2L 12804817 12804864 chr2L 12804914 12804961 5 97 13.5 9.5 11.5 0.4 144 chr2L 12804817 intergenic not near genes chr2L 12804889 intergenic not near genes chr2L 12804961 intergenic not near genes chr2L_5_12800001 chr2L_12800001 RAL-443 481 chr2L 12812507 12812557 chr2L 12813152 12813201 4 644 10.0 12.0 11.0 0.3 694 chr2L 12812507 intergenic not near genes chr2L 12812854 intergenic not near genes chr2L 12813201 intergenic not near genes chr2L_4_12810001 chr2L_12810001 RAL-443 482 chr2L 12861684 12861698 chr2L 12863171 12863185 hobo 5 1487 2.0 2.0 2.0 1.7 1501 chr2L 12861684 intergenic not near genes chr2L 12862434 intergenic not near genes chr2L 12863185 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-443 483 chr2L 12861700 12861724 chr2L 12863165 12863185 hobo 5 1468 1.0 2.0 1.5 2.0 1485 chr2L 12861700 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863185 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-443 484 chr2L 12874484 12874522 chr2L 12874572 12874619 9 94 10.0 10.0 10.0 0.8 135 chr2L 12874484 intergenic not near genes chr2L 12874552 intergenic not near genes chr2L 12874619 intergenic not near genes chr2L_9_12870001 chr2L_12870001 RAL-443 485 chr2L 12894006 12894046 chr2L 12895488 12895493 hobo 6 1477 6.5 4.0 5.2 1.0 1487 chr2L 12894006 intergenic not near genes chr2L 12894750 intergenic not near genes chr2L 12895493 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-443 486 chr2L 12930475 12930498 chr2L 12930571 12930594 10 94 1.0 8.0 4.5 1.8 119 chr2L 12930475 intergenic not near genes chr2L 12930534 intergenic not near genes chr2L 12930594 intergenic not near genes chr2L_10_12930001 chr2L_12930001 RAL-443 487 chr2L 12933831 12933881 chr2L 12941318 12941368 blood 20 7482 5.5 6.0 5.8 2.9 7537 chr2L 12933831 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941368 intergenic not near genes chr2L_20_12935001 chr2L_12935001 RAL-443 488 chr2L 12944917 12944964 chr2L 12945087 12945131 6 168 3.0 0.0 1.5 2.4 214 chr2L 12944917 intergenic not near genes chr2L 12945024 intergenic not near genes chr2L 12945131 intergenic not near genes chr2L_6_12945001 chr2L_12945001 RAL-443 489 chr2L 13033837 13033863 chr2L 13033945 13033971 9 107 9.5 11.5 10.5 0.8 134 chr2L 13033837 intron CG9932 - chr2L 13033904 intron CG9932 - chr2L 13033971 intron CG9932 - chr2L_9_13030001 chr2L_13030001 RAL-443 490 chr2L 13036228 13036268 chr2L 13036490 13036530 X-element 13 261 4.5 12.0 8.2 1.4 302 chr2L 13036228 intron CG9932 - chr2L 13036379 intron CG9932 - chr2L 13036530 intron CG9932 - chr2L_13_13035001 chr2L_13035001 RAL-443 491 chr2L 13063379 13063403 chr2L 13063476 13063499 4 96 13.0 9.5 11.2 0.3 120 chr2L 13063379 intergenic not near genes chr2L 13063439 intergenic not near genes chr2L 13063499 intergenic not near genes chr2L_4_13060001 chr2L_13060001 RAL-443 492 chr2L 13080110 13080155 chr2L 13080210 13080255 6 98 11.0 12.5 11.8 0.5 145 chr2L 13080110 intergenic not near genes chr2L 13080182 intergenic not near genes chr2L 13080255 intergenic not near genes chr2L_6_13080001 chr2L_13080001 RAL-443 493 chr2L 13147727 13147739 chr2L 13147823 13147825 4 93 11.5 10.5 11.0 0.3 98 chr2L 13147727 intergenic not near genes chr2L 13147776 intergenic not near genes chr2L 13147825 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-443 494 chr2L 13147741 13147766 chr2L 13147821 13147856 9 91 10.5 9.5 10.0 0.8 115 chr2L 13147741 intergenic not near genes chr2L 13147798 intergenic not near genes chr2L 13147856 intergenic not near genes chr2L_9_13145001 chr2L_13145001 RAL-443 495 chr2L 13163041 13163057 chr2L 13163159 13163185 5 126 15.0 15.0 15.0 0.3 144 chr2L 13163041 exon CG5204 + chr2L 13163113 3` UTR CG5204 + chr2L 13163185 intergenic CG5204 +,DnaJ-H - chr2L_5_13160001 chr2L_13160001 RAL-443 496 chr2L 13193344 13193355 chr2L 13193446 13193454 4 101 18.0 13.0 15.5 0.2 110 chr2L 13193344 intron Edem2 + chr2L 13193399 intron Edem2 + chr2L 13193454 intron Edem2 + chr2L_4_13190001 chr2L_13190001 RAL-443 497 chr2L 13228585 13228613 chr2L 13228687 13228714 4 102 18.0 16.0 17.0 0.2 129 chr2L 13228585 intergenic CG16813 + chr2L 13228650 intergenic CG16813 + chr2L 13228714 intergenic CG16813 + chr2L_4_13225001 chr2L_13225001 RAL-443 498 chr2L 13229234 13229272 chr2L 13229531 13229565 5 296 25.5 15.0 20.2 0.2 331 chr2L 13229234 intergenic not near genes chr2L 13229400 intergenic CG16815 + chr2L 13229565 intergenic CG16815 + chr2L_5_13225001 chr2L_13225001 RAL-443 499 chr2L 13231870 13231915 chr2L 13232001 13232046 12 130 12.5 15.5 14.0 0.8 176 chr2L 13231870 intergenic Prosalpha6T + chr2L 13231958 intergenic Prosalpha6T + chr2L 13232046 5` UTR Prosalpha6T + chr2L_12_13230001 chr2L_13230001 RAL-443 500 chr2L 13266372 13266412 chr2L 13266465 13266520 7 103 11.0 11.5 11.2 0.6 148 chr2L 13266372 intron CG44085 + chr2L 13266446 intron CG44085 + chr2L 13266520 intron CG44085 + chr2L_7_13265001 chr2L_13265001 RAL-443 501 chr2L 13312801 13312853 chr2L 13312973 13313002 6 158 15.5 9.5 12.5 0.4 201 chr2L 13312801 intron CG43778 - chr2L 13312902 intron CG43778 - chr2L 13313002 intron CG43778 - chr2L_6_13310001 chr2L_13310001 RAL-443 502 chr2L 13369266 13369312 chr2L 13369382 13369427 9 113 25.5 22.5 24.0 0.4 161 chr2L 13369266 5` UTR CG31855 + chr2L 13369346 5` UTR CG31855 + chr2L 13369427 exon CG31855 + chr2L_9_13365001 chr2L_13365001 RAL-443 503 chr2L 13398701 13398747 chr2L 13398801 13398847 18 100 9.0 3.5 6.2 2.5 146 chr2L 13398701 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398774 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398847 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_18_13395001 chr2L_13395001 RAL-443 504 chr2L 13405630 13405677 chr2L 13410447 13410484 Doc 13 4811 4.0 7.0 5.5 2.0 4854 chr2L 13405630 exon CG7110 + chr2L 13408057 intron CG7110 + chr2L 13410484 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-443 505 chr2L 13426350 13426371 chr2L 13426484 13426504 6 136 10.0 7.0 8.5 0.6 154 chr2L 13426350 intron CG42784 + chr2L 13426427 intron CG42784 + chr2L 13426504 intron CG42784 + chr2L_6_13425001 chr2L_13425001 RAL-443 506 chr2L 13426372 13426387 chr2L 13426483 13426504 6 127 7.5 7.0 7.2 0.7 132 chr2L 13426372 intron CG42784 + chr2L 13426438 intron CG42784 + chr2L 13426504 intron CG42784 + chr2L_6_13425001 chr2L_13425001 RAL-443 507 chr2L 13437329 13437372 chr2L 13437430 13437466 9 96 5.5 0.0 2.8 2.4 137 chr2L 13437329 intron,intron CG42784 +,Tehao + chr2L 13437398 intron,intron CG42784 +,Tehao + chr2L 13437466 intron,intron CG42784 +,Tehao + chr2L_9_13435001 chr2L_13435001 RAL-443 508 chr2L 13449442 13449491 chr2L 13456898 13456947 Quasimodo 14 7455 1.5 4.0 2.8 3.7 7505 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456947 intron CG42784 + chr2L_14_13450001 chr2L_13450001 RAL-443 509 chr2L 13481436 13481454 chr2L 13482063 13482075 jockey 12 625 11.0 12.5 11.8 0.9 639 chr2L 13481436 intron CG42784 + chr2L 13481756 intron CG42784 + chr2L 13482075 intron CG42784 + chr2L_12_13480001 chr2L_13480001 RAL-443 510 chr2L 13481458 13481470 chr2L 13482059 13482088 jockey 5 620 7.5 10.5 9.0 0.5 630 chr2L 13481458 intron CG42784 + chr2L 13481773 intron CG42784 + chr2L 13482088 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-443 511 chr2L 13493318 13493364 chr2L 13493613 13493665 7 299 13.0 13.5 13.2 0.5 347 chr2L 13493318 intron CG42784 + chr2L 13493492 intron CG42784 + chr2L 13493665 intron CG42784 + chr2L_7_13490001 chr2L_13490001 RAL-443 512 chr2L 13522270 13522275 chr2L 13527597 13527599 Transpac 5 5325 5.5 5.5 5.5 0.8 5329 chr2L 13522270 intron B4 - chr2L 13524934 intron B4 - chr2L 13527599 intron B4 - chr2L_5_13520001 chr2L_13520001 RAL-443 513 chr2L 13522277 13522286 chr2L 13527594 13527612 Transpac 4 5320 4.0 5.5 4.8 0.7 5335 chr2L 13522277 intron B4 - chr2L 13524944 intron B4 - chr2L 13527612 intron B4 - chr2L_4_13520001 chr2L_13520001 RAL-443 514 chr2L 13560383 13560402 chr2L 13565224 13565243 F-element 7 4841 12.5 8.5 10.5 0.6 4860 chr2L 13560383 intron kuz + chr2L 13562813 intron kuz + chr2L 13565243 intron kuz + chr2L_7_13560001 chr2L_13560001 RAL-443 515 chr2L 13560404 13560421 chr2L 13565218 13565262 F-element 7 4837 9.5 6.5 8.0 0.8 4858 chr2L 13560404 intron kuz + chr2L 13562833 intron kuz + chr2L 13565262 intron kuz + chr2L_7_13560001 chr2L_13560001 RAL-443 516 chr2L 13579977 13579999 chr2L 13580307 13580339 10 332 32.5 35.5 34.0 0.3 362 chr2L 13579977 intron kuz + chr2L 13580158 intron kuz + chr2L 13580339 intron kuz + chr2L_10_13580001 chr2L_13580001 RAL-443 517 chr2L 13622209 13622233 chr2L 13622312 13622335 4 106 5.5 8.5 7.0 0.5 126 chr2L 13622209 intron kuz + chr2L 13622272 intron kuz + chr2L 13622335 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-443 518 chr2L 13676323 13676330 chr2L 13676444 13676456 5 125 20.5 17.0 18.8 0.3 133 chr2L 13676323 intergenic not near genes chr2L 13676390 intergenic CG31814 - chr2L 13676456 intergenic CG31814 - chr2L_5_13675001 chr2L_13675001 RAL-443 519 chr2L 13676331 13676363 chr2L 13676438 13676489 9 122 17.5 14.5 16.0 0.5 158 chr2L 13676331 intergenic not near genes chr2L 13676410 intergenic CG31814 - chr2L 13676489 intergenic CG31814 - chr2L_9_13675001 chr2L_13675001 RAL-443 520 chr2L 13677927 13677956 chr2L 13678027 13678056 9 97 13.0 17.0 15.0 0.6 129 chr2L 13677927 3` UTR CG31814 - chr2L 13677992 3` UTR CG31814 - chr2L 13678056 3` UTR CG31814 - chr2L_9_13675001 chr2L_13675001 RAL-443 521 chr2L 13712395 13712413 chr2L 13712483 13712520 5 106 14.5 11.5 13.0 0.4 125 chr2L 13712395 intron CG31814 - chr2L 13712458 intron CG31814 - chr2L 13712520 intron CG31814 - chr2L_5_13710001 chr2L_13710001 RAL-443 522 chr2L 13713552 13713574 chr2L 13713648 13713670 8 95 9.0 17.5 13.2 0.6 118 chr2L 13713552 intron CG31814 - chr2L 13713611 intron CG31814 - chr2L 13713670 intron CG31814 - chr2L_8_13710001 chr2L_13710001 RAL-443 523 chr2L 13749192 13749210 chr2L 13749295 13749313 13 103 0.5 0.0 0.2 10.8 121 chr2L 13749192 intron,intron CR44846 +,TM9SF4 + chr2L 13749252 intron,intron CR44846 +,TM9SF4 + chr2L 13749313 intron,intron CR44846 +,TM9SF4 + chr2L_13_13745001 chr2L_13745001 RAL-443 524 chr2L 13761817 13761831 chr2L 13762920 13762962 Doc 5 1125 8.5 8.0 8.2 0.5 1145 chr2L 13761817 intron TM9SF4 + chr2L 13762390 intron TM9SF4 + chr2L 13762962 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-443 525 chr2L 13800157 13800207 chr2L 13800280 13800331 25 122 5.0 9.0 7.0 3.1 174 chr2L 13800157 intergenic Sec71 + chr2L 13800244 intergenic not near genes chr2L 13800331 intergenic not near genes chr2L_25_13800001 chr2L_13800001 RAL-443 526 chr2L 13842115 13842149 chr2L 13842219 13842253 14 103 22.5 16.0 19.2 0.7 138 chr2L 13842115 intron CenG1A + chr2L 13842184 intron CenG1A + chr2L 13842253 intron CenG1A + chr2L_14_13840001 chr2L_13840001 RAL-443 527 chr2L 13853073 13853115 chr2L 13862243 13862276 roo 15 9162 5.5 8.5 7.0 1.9 9203 chr2L 13853073 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862276 intron CenG1A + chr2L_15_13855001 chr2L_13855001 RAL-443 528 chr2L 13868621 13868648 chr2L 13868817 13868864 4 207 5.0 7.5 6.2 0.6 243 chr2L 13868621 intron CenG1A + chr2L 13868742 intron CenG1A + chr2L 13868864 intron CenG1A + chr2L_4_13865001 chr2L_13865001 RAL-443 529 chr2L 13944400 13944432 chr2L 13944539 13944572 10 139 12.0 11.0 11.5 0.8 172 chr2L 13944400 intron Ance-3 + chr2L 13944486 intron Ance-3 + chr2L 13944572 intron Ance-3 + chr2L_10_13940001 chr2L_13940001 RAL-443 530 chr2L 13972644 13972668 chr2L 13972746 13972775 4 106 12.5 15.0 13.8 0.3 131 chr2L 13972644 intron He - chr2L 13972710 intron He - chr2L 13972775 intron He - chr2L_4_13970001 chr2L_13970001 RAL-443 531 chr2L 13981503 13981549 chr2L 13981614 13981645 8 105 6.0 2.0 4.0 1.6 142 chr2L 13981503 exon NimC2 + chr2L 13981574 intron NimC2 + chr2L 13981645 intron NimC2 + chr2L_8_13980001 chr2L_13980001 RAL-443 532 chr2L 13988261 13988390 chr2L 13988368 13988491 18 103 8.0 3.5 5.8 2.6 230 chr2L 13988261 intron rk - chr2L 13988376 intron rk - chr2L 13988491 intron rk - chr2L_18_13985001 chr2L_13985001 RAL-443 533 chr2L 14020399 14020450 chr2L 14020501 14020552 5 102 19.0 22.5 20.8 0.2 153 chr2L 14020399 intergenic CR44849 +,NimC3 - chr2L 14020476 intergenic CR44849 +,NimC3 - chr2L 14020552 intergenic CR44849 +,NimC3 - chr2L_5_14020001 chr2L_14020001 RAL-443 534 chr2L 14096137 14096172 chr2L 14096249 14096259 4 104 15.5 16.5 16.0 0.2 122 chr2L 14096137 intergenic not near genes chr2L 14096198 intergenic not near genes chr2L 14096259 intergenic not near genes chr2L_4_14095001 chr2L_14095001 RAL-443 535 chr2L 14222284 14222318 chr2L 14222391 14222415 7 100 14.5 14.0 14.2 0.5 131 chr2L 14222284 intron Dyrk2 - chr2L 14222350 intron Dyrk2 - chr2L 14222415 intron Dyrk2 - chr2L_7_14220001 chr2L_14220001 RAL-443 536 chr2L 14271027 14271076 chr2L 14271124 14271164 9 93 7.0 6.5 6.8 1.2 137 chr2L 14271027 intron wb + chr2L 14271096 intron wb + chr2L 14271164 intron wb + chr2L_9_14270001 chr2L_14270001 RAL-443 537 chr2L 14333891 14333929 chr2L 14334011 14334049 12 118 3.5 1.5 2.5 3.4 158 chr2L 14333891 intergenic ms(2)34Fe +,CG33090 + chr2L 14333970 intergenic ms(2)34Fe +,CG33090 + chr2L 14334049 intergenic CG33090 +,ms(2)34Fe + chr2L_12_14330001 chr2L_14330001 RAL-443 538 chr2L 14340515 14340553 chr2L 14340610 14340649 5 98 11.0 11.0 11.0 0.4 134 chr2L 14340515 intron CG33090 + chr2L 14340582 intron CG33090 + chr2L 14340649 intron CG33090 + chr2L_5_14340001 chr2L_14340001 RAL-443 539 chr2L 14374758 14374786 chr2L 14374869 14374897 8 111 17.5 7.5 12.5 0.6 139 chr2L 14374758 intergenic not near genes chr2L 14374828 intergenic not near genes chr2L 14374897 intergenic not near genes chr2L_8_14370001 chr2L_14370001 RAL-443 540 chr2L 14378090 14378132 chr2L 14378313 14378355 7 219 11.5 9.5 10.5 0.6 265 chr2L 14378090 intergenic ppk - chr2L 14378222 3` UTR ppk - chr2L 14378355 3` UTR ppk - chr2L_7_14375001 chr2L_14375001 RAL-443 541 chr2L 14378629 14378663 chr2L 14378728 14378762 11 96 14.0 1.0 7.5 1.3 133 chr2L 14378629 3` UTR ppk - chr2L 14378696 3` UTR ppk - chr2L 14378762 3` UTR ppk - chr2L_11_14375001 chr2L_14375001 RAL-443 542 chr2L 14462707 14462713 chr2L 14462814 14462820 4 107 23.0 15.0 19.0 0.2 113 chr2L 14462707 intergenic not near genes chr2L 14462764 intergenic not near genes chr2L 14462820 intergenic not near genes chr2L_4_14460001 chr2L_14460001 RAL-443 543 chr2L 14465568 14465609 chr2L 14469051 14469095 hopper2 4 3489 9.0 7.0 8.0 0.4 3527 chr2L 14465568 intergenic not near genes chr2L 14467332 intergenic not near genes chr2L 14469095 intergenic not near genes chr2L_4_14465001 chr2L_14465001 RAL-443 544 chr2L 14555147 14555158 chr2L 14555240 14555257 4 98 18.5 25.5 22.0 0.2 110 chr2L 14555147 intergenic not near genes chr2L 14555202 intergenic not near genes chr2L 14555257 intergenic not near genes chr2L_4_14555001 chr2L_14555001 RAL-443 545 chr2L 14564195 14564217 chr2L 14564271 14564277 4 70 9.5 9.5 9.5 0.4 82 chr2L 14564195 intergenic CG3473 - chr2L 14564236 intergenic not near genes chr2L 14564277 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-443 546 chr2L 14570701 14570719 chr2L 14570802 14570820 7 101 3.0 2.0 2.5 2.0 119 chr2L 14570701 intergenic not near genes chr2L 14570760 intergenic not near genes chr2L 14570820 intergenic not near genes chr2L_7_14570001 chr2L_14570001 RAL-443 547 chr2L 14588365 14588419 chr2L 14588539 14588593 21 170 4.0 3.5 3.8 4.4 228 chr2L 14588365 intergenic CG42680 - chr2L 14588479 intergenic CG42680 - chr2L 14588593 intergenic CG42680 - chr2L_21_14585001 chr2L_14585001 RAL-443 548 chr2L 14601961 14602003 chr2L 14602065 14602089 12 102 1.5 3.0 2.2 3.8 128 chr2L 14601961 exon osp - chr2L 14602025 intron osp - chr2L 14602089 intron osp - chr2L_12_14600001 chr2L_14600001 RAL-443 549 chr2L 14678725 14678772 chr2L 14678879 14678926 11 150 4.5 6.5 5.5 1.7 201 chr2L 14678725 intron osp - chr2L 14678826 intron osp - chr2L 14678926 intron osp - chr2L_11_14675001 chr2L_14675001 RAL-443 550 chr2L 14694242 14694286 chr2L 14694381 14694423 10 143 16.5 8.0 12.2 0.8 181 chr2L 14694242 intergenic not near genes chr2L 14694332 intergenic not near genes chr2L 14694423 intergenic not near genes chr2L_10_14690001 chr2L_14690001 RAL-443 551 chr2L 14707164 14707240 chr2L 14707270 14707360 20 123 4.0 3.0 3.5 4.4 196 chr2L 14707164 intergenic not near genes chr2L 14707262 intergenic not near genes chr2L 14707360 intergenic not near genes chr2L_20_14705001 chr2L_14705001 RAL-443 552 chr2L 14716604 14716634 chr2L 14716697 14716720 4 94 15.0 19.0 17.0 0.2 116 chr2L 14716604 intergenic not near genes chr2L 14716662 intergenic not near genes chr2L 14716720 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-443 553 chr2L 14747540 14747563 chr2L 14747647 14747670 4 107 9.5 11.5 10.5 0.3 130 chr2L 14747540 intergenic not near genes chr2L 14747605 intergenic not near genes chr2L 14747670 intergenic not near genes chr2L_4_14745001 chr2L_14745001 RAL-443 554 chr2L 14758805 14758838 chr2L 14758905 14758938 8 98 12.0 15.5 13.8 0.5 133 chr2L 14758805 intergenic not near genes chr2L 14758872 intergenic not near genes chr2L 14758938 intergenic not near genes chr2L_8_14755001 chr2L_14755001 RAL-443 555 chr2L 14768914 14768958 chr2L 14769012 14769056 8 96 1.5 4.0 2.8 2.1 142 chr2L 14768914 intergenic not near genes chr2L 14768985 intergenic not near genes chr2L 14769056 intergenic not near genes chr2L_8_14765001 chr2L_14765001 RAL-443 556 chr2L 14787117 14787157 chr2L 14787213 14787253 7 95 16.0 15.5 15.8 0.4 136 chr2L 14787117 intergenic not near genes chr2L 14787185 intergenic not near genes chr2L 14787253 intergenic not near genes chr2L_7_14785001 chr2L_14785001 RAL-443 557 chr2L 14803863 14803905 chr2L 14809086 14809128 copia 11 5222 4.0 6.5 5.2 1.8 5265 chr2L 14803863 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809128 intergenic not near genes chr2L_11_14805001 chr2L_14805001 RAL-443 558 chr2L 14839742 14839769 chr2L 14839830 14839865 8 91 16.0 14.5 15.2 0.5 123 chr2L 14839742 intergenic not near genes chr2L 14839804 intergenic not near genes chr2L 14839865 intergenic not near genes chr2L_8_14835001 chr2L_14835001 RAL-443 559 chr2L 14840955 14841007 chr2L 14841063 14841109 8 103 12.0 15.0 13.5 0.6 154 chr2L 14840955 3` UTR CR43805 - chr2L 14841032 3` UTR CR43805 - chr2L 14841109 3` UTR CR43805 - chr2L_8_14840001 chr2L_14840001 RAL-443 560 chr2L 14854584 14854613 chr2L 14854683 14854718 9 98 9.0 10.0 9.5 0.9 134 chr2L 14854584 intergenic not near genes chr2L 14854651 intergenic not near genes chr2L 14854718 intergenic not near genes chr2L_9_14850001 chr2L_14850001 RAL-443 561 chr2L 14889958 14889983 chr2L 14890383 14890427 jockey 5 440 2.5 4.5 3.5 1.1 469 chr2L 14889958 intergenic not near genes chr2L 14890192 intergenic not near genes chr2L 14890427 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-443 562 chr2L 14896830 14896873 chr2L 14897112 14897153 8 281 11.0 11.0 11.0 0.7 323 chr2L 14896830 intergenic not near genes chr2L 14896992 intergenic not near genes chr2L 14897153 intergenic not near genes chr2L_8_14895001 chr2L_14895001 RAL-443 563 chr2L 14905737 14905759 chr2L 14905854 14905876 6 117 1.5 0.5 1.0 3.0 139 chr2L 14905737 intergenic not near genes chr2L 14905806 intergenic not near genes chr2L 14905876 intergenic not near genes chr2L_6_14905001 chr2L_14905001 RAL-443 564 chr2L 14984368 14984380 chr2L 14991990 14992002 opus 6 7620 4.0 3.5 3.8 1.2 7634 chr2L 14984368 intron mol - chr2L 14988185 intron mol - chr2L 14992002 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-443 565 chr2L 15000854 15000891 chr2L 15000960 15000997 4 110 13.5 13.0 13.2 0.3 143 chr2L 15000854 intergenic not near genes chr2L 15000926 intergenic not near genes chr2L 15000997 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-443 566 chr2L 15003528 15003562 chr2L 15003632 15003666 6 101 14.5 18.5 16.5 0.3 138 chr2L 15003528 intergenic not near genes chr2L 15003597 intergenic not near genes chr2L 15003666 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-443 567 chr2L 15013137 15013181 chr2L 15013257 15013310 18 122 2.0 6.5 4.2 3.5 173 chr2L 15013137 intergenic CR43856 - chr2L 15013224 intergenic not near genes chr2L 15013310 intergenic not near genes chr2L_18_15010001 chr2L_15010001 RAL-443 568 chr2L 15014612 15014617 chr2L 15014701 15014711 8 92 3.5 4.5 4.0 1.6 99 chr2L 15014612 intergenic not near genes chr2L 15014662 intergenic not near genes chr2L 15014711 intergenic not near genes chr2L_8_15010001 chr2L_15010001 RAL-443 569 chr2L 15021438 15021472 chr2L 15021529 15021568 12 96 14.5 13.5 14.0 0.8 130 chr2L 15021438 intron GABA-B-R1 + chr2L 15021503 intron GABA-B-R1 + chr2L 15021568 intron GABA-B-R1 + chr2L_12_15020001 chr2L_15020001 RAL-443 570 chr2L 15031537 15031564 chr2L 15031797 15031824 6 259 19.0 13.5 16.2 0.3 287 chr2L 15031537 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031680 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031824 intron GABA-B-R1 + chr2L_6_15030001 chr2L_15030001 RAL-443 571 chr2L 15044705 15044713 chr2L 15044801 15044809 4 96 10.5 1.0 5.8 0.6 104 chr2L 15044705 intergenic ck - chr2L 15044757 intergenic ck - chr2L 15044809 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-443 572 chr2L 15044714 15044735 chr2L 15044796 15044814 12 91 4.0 1.0 2.5 3.4 100 chr2L 15044714 intergenic ck - chr2L 15044764 intergenic ck - chr2L 15044814 intergenic ck - chr2L_12_15040001 chr2L_15040001 RAL-443 573 chr2L 15078049 15078100 chr2L 15078157 15078208 15 106 2.5 4.5 3.5 3.3 159 chr2L 15078049 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078208 intron CG15270 + chr2L_15_15075001 chr2L_15075001 RAL-443 574 chr2L 15087738 15087769 chr2L 15087868 15087899 10 129 11.0 14.0 12.5 0.7 161 chr2L 15087738 exon CG15270 + chr2L 15087818 intron CG15270 + chr2L 15087899 intron CG15270 + chr2L_10_15085001 chr2L_15085001 RAL-443 575 chr2L 15122754 15122808 chr2L 15122854 15122908 12 100 4.0 5.0 4.5 2.2 154 chr2L 15122754 intergenic not near genes chr2L 15122831 intergenic not near genes chr2L 15122908 intergenic not near genes chr2L_12_15120001 chr2L_15120001 RAL-443 576 chr2L 15127748 15127785 chr2L 15127854 15127891 6 94 10.5 8.0 9.2 0.6 143 chr2L 15127748 intergenic not near genes chr2L 15127820 intergenic not near genes chr2L 15127891 intergenic not near genes chr2L_6_15125001 chr2L_15125001 RAL-443 577 chr2L 15318948 15318980 chr2L 15319044 15319077 6 97 9.0 9.0 9.0 0.6 129 chr2L 15318948 intergenic nht - chr2L 15319012 intergenic nht - chr2L 15319077 intergenic nht - chr2L_6_15315001 chr2L_15315001 RAL-443 578 chr2L 15346048 15346080 chr2L 15346130 15346162 6 90 5.0 6.0 5.5 0.9 114 chr2L 15346048 intergenic not near genes chr2L 15346105 intergenic not near genes chr2L 15346162 intergenic not near genes chr2L_6_15345001 chr2L_15345001 RAL-443 579 chr2L 15354730 15354762 chr2L 15354837 15354869 11 104 12.0 10.5 11.2 0.9 139 chr2L 15354730 intergenic not near genes chr2L 15354800 intergenic not near genes chr2L 15354869 intergenic not near genes chr2L_11_15350001 chr2L_15350001 RAL-443 580 chr2L 15365027 15365033 chr2L 15365210 15365216 4 183 8.0 12.0 10.0 0.4 189 chr2L 15365027 intergenic not near genes chr2L 15365122 intergenic not near genes chr2L 15365216 intergenic not near genes chr2L_4_15365001 chr2L_15365001 RAL-443 581 chr2L 15387354 15387405 chr2L 15387454 15387505 5 99 13.5 9.5 11.5 0.4 151 chr2L 15387354 intergenic not near genes chr2L 15387430 intergenic not near genes chr2L 15387505 intergenic not near genes chr2L_5_15385001 chr2L_15385001 RAL-443 582 chr2L 15439322 15439346 chr2L 15439419 15439443 5 97 5.5 5.5 5.5 0.8 121 chr2L 15439322 intergenic not near genes chr2L 15439382 intergenic not near genes chr2L 15439443 intergenic not near genes chr2L_5_15435001 chr2L_15435001 RAL-443 583 chr2L 15446029 15446080 chr2L 15453518 15453569 blood 16 7487 3.0 4.0 3.5 3.6 7540 chr2L 15446029 intergenic not near genes chr2L 15449799 intergenic not near genes chr2L 15453569 intergenic not near genes chr2L_16_15445001 chr2L_15445001 RAL-443 584 chr2L 15476379 15476422 chr2L 15476558 15476601 16 177 2.0 4.5 3.2 3.8 222 chr2L 15476379 intergenic sna - chr2L 15476490 intergenic sna - chr2L 15476601 3` UTR sna - chr2L_16_15475001 chr2L_15475001 RAL-443 585 chr2L 15482569 15482603 chr2L 15482725 15482759 11 156 21.0 11.0 16.0 0.6 190 chr2L 15482569 intergenic not near genes chr2L 15482664 intergenic not near genes chr2L 15482759 intergenic not near genes chr2L_11_15480001 chr2L_15480001 RAL-443 586 chr2L 15483264 15483302 chr2L 15483370 15483408 10 104 17.5 14.0 15.8 0.6 144 chr2L 15483264 intergenic not near genes chr2L 15483336 intergenic not near genes chr2L 15483408 intergenic not near genes chr2L_10_15480001 chr2L_15480001 RAL-443 587 chr2L 15490032 15490044 chr2L 15490168 15490180 4 136 8.5 15.0 11.8 0.3 148 chr2L 15490032 intergenic not near genes chr2L 15490106 intergenic not near genes chr2L 15490180 intergenic not near genes chr2L_4_15490001 chr2L_15490001 RAL-443 588 chr2L 15499891 15499945 chr2L 15499999 15500052 8 108 1.0 4.0 2.5 2.3 161 chr2L 15499891 intron lace + chr2L 15499972 intron lace + chr2L 15500052 intron lace + chr2L_8_15495001 chr2L_15495001 RAL-443 589 chr2L 15521618 15521642 chr2L 15521721 15521745 6 103 18.0 18.0 18.0 0.3 127 chr2L 15521618 intergenic CR43761 + chr2L 15521682 intergenic CR43761 + chr2L 15521745 intergenic CR43761 + chr2L_6_15520001 chr2L_15520001 RAL-443 590 chr2L 15586390 15586434 chr2L 15593462 15593505 297 16 7068 9.0 2.5 5.8 2.4 7115 chr2L 15586390 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593505 intergenic not near genes chr2L_16_15585001 chr2L_15585001 RAL-443 591 chr2L 15586439 15586443 chr2L 15593461 15593483 297 5 7054 6.5 2.5 4.5 0.9 7044 chr2L 15586439 intergenic not near genes chr2L 15589961 intergenic not near genes chr2L 15593483 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-443 592 chr2L 15600085 15600113 chr2L 15600198 15600231 6 120 10.0 15.0 12.5 0.4 146 chr2L 15600085 intergenic not near genes chr2L 15600158 intergenic not near genes chr2L 15600231 intergenic not near genes chr2L_6_15600001 chr2L_15600001 RAL-443 593 chr2L 15608394 15608408 chr2L 15608493 15608507 5 99 9.0 9.5 9.2 0.5 113 chr2L 15608394 intergenic not near genes chr2L 15608450 intergenic not near genes chr2L 15608507 intergenic not near genes chr2L_5_15605001 chr2L_15605001 RAL-443 594 chr2L 15612030 15612066 chr2L 15612155 15612191 7 123 5.0 12.0 8.5 0.7 161 chr2L 15612030 intergenic CG15255 -,CG11864 - chr2L 15612110 intergenic CG11864 -,CG15255 - chr2L 15612191 intergenic CG11864 -,CG15255 - chr2L_7_15610001 chr2L_15610001 RAL-443 595 chr2L 15732497 15732537 chr2L 15732612 15732652 15 114 21.0 16.0 18.5 0.8 155 chr2L 15732497 intron CycE - chr2L 15732574 intron CycE - chr2L 15732652 intron CycE - chr2L_15_15730001 chr2L_15730001 RAL-443 596 chr2L 15776547 15776584 chr2L 15776965 15777015 10 424 30.5 30.0 30.2 0.3 468 chr2L 15776547 exon CG43760 - chr2L 15776781 5` UTR CG43760 - chr2L 15777015 intergenic CG43760 - chr2L_10_15775001 chr2L_15775001 RAL-443 597 chr2L 15790190 15790200 chr2L 15790321 15790331 4 131 13.5 17.5 15.5 0.2 141 chr2L 15790190 intergenic CG18109 + chr2L 15790260 intergenic CG18109 + chr2L 15790331 intergenic CG18109 + chr2L_4_15790001 chr2L_15790001 RAL-443 598 chr2L 15823332 15823360 chr2L 15823428 15823456 4 96 13.5 7.5 10.5 0.3 124 chr2L 15823332 intergenic CR44601 - chr2L 15823394 intergenic CR44601 - chr2L 15823456 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-443 599 chr2L 15826877 15826892 chr2L 15829291 15829306 Tabor 6 2413 4.0 13.0 8.5 0.6 2429 chr2L 15826877 intergenic not near genes chr2L 15828092 intergenic not near genes chr2L 15829306 intergenic not near genes chr2L_6_15825001 chr2L_15825001 RAL-443 600 chr2L 15860963 15860992 chr2L 15862031 15862056 5 1063 8.5 10.5 9.5 0.5 1093 chr2L 15860963 intergenic not near genes chr2L 15861510 intergenic not near genes chr2L 15862056 intergenic not near genes chr2L_5_15860001 chr2L_15860001 RAL-443 601 chr2L 15887700 15887740 chr2L 15887853 15887890 9 150 13.5 12.0 12.8 0.7 190 chr2L 15887700 intergenic not near genes chr2L 15887795 intergenic not near genes chr2L 15887890 intergenic not near genes chr2L_9_15885001 chr2L_15885001 RAL-443 602 chr2L 15906166 15906214 chr2L 15906275 15906321 11 106 2.5 6.5 4.5 2.0 155 chr2L 15906166 intron beat-Ib - chr2L 15906244 intron beat-Ib - chr2L 15906321 exon beat-Ib - chr2L_11_15905001 chr2L_15905001 RAL-443 603 chr2L 15921804 15921822 chr2L 15921967 15921985 4 162 10.0 11.0 10.5 0.3 181 chr2L 15921804 intron beat-Ib - chr2L 15921894 intron beat-Ib - chr2L 15921985 intron beat-Ib - chr2L_4_15920001 chr2L_15920001 RAL-443 604 chr2L 15935178 15935221 chr2L 15935287 15935331 7 109 2.0 2.5 2.2 2.2 153 chr2L 15935178 intron beat-Ib - chr2L 15935254 intron beat-Ib - chr2L 15935331 intron beat-Ib - chr2L_7_15935001 chr2L_15935001 RAL-443 605 chr2L 15947150 15947181 chr2L 15947238 15947283 7 90 11.5 5.5 8.5 0.7 133 chr2L 15947150 intron beat-Ib - chr2L 15947216 intron beat-Ib - chr2L 15947283 intron beat-Ib - chr2L_7_15945001 chr2L_15945001 RAL-443 606 chr2L 15950378 15950408 chr2L 15950476 15950504 7 88 9.0 10.5 9.8 0.6 126 chr2L 15950378 intron beat-Ib - chr2L 15950441 intron beat-Ib - chr2L 15950504 intron beat-Ib - chr2L_7_15950001 chr2L_15950001 RAL-443 607 chr2L 15956013 15956049 chr2L 15957495 15957536 hobo 9 1486 12.0 10.0 11.0 0.8 1523 chr2L 15956013 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957536 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-443 608 chr2L 15971983 15971998 chr2L 15972095 15972116 8 116 0.0 6.5 3.2 1.9 133 chr2L 15971983 intergenic not near genes chr2L 15972050 intergenic not near genes chr2L 15972116 intergenic not near genes chr2L_8_15970001 chr2L_15970001 RAL-443 609 chr2L 16001450 16001492 chr2L 16001552 16001600 9 104 0.5 6.5 3.5 2.0 150 chr2L 16001450 intron beat-Ic + chr2L 16001525 intron beat-Ic + chr2L 16001600 intron beat-Ic + chr2L_9_16000001 chr2L_16000001 RAL-443 610 chr2L 16043554 16043597 chr2L 16043659 16043702 20 102 5.0 6.5 5.8 2.9 148 chr2L 16043554 intron,intron BicC +,CG45084 + chr2L 16043628 intron,intron BicC +,CG45084 + chr2L 16043702 intron,intron BicC +,CG45084 + chr2L_20_16040001 chr2L_16040001 RAL-443 611 chr2L 16051593 16051637 chr2L 16051689 16051711 6 89 6.5 9.5 8.0 0.7 118 chr2L 16051593 intron beat-Ia + chr2L 16051652 intron beat-Ia + chr2L 16051711 intron beat-Ia + chr2L_6_16050001 chr2L_16050001 RAL-443 612 chr2L 16053095 16053141 chr2L 16053226 16053279 4 133 23.0 20.0 21.5 0.2 184 chr2L 16053095 intron beat-Ia + chr2L 16053187 intron beat-Ia + chr2L 16053279 intron beat-Ia + chr2L_4_16050001 chr2L_16050001 RAL-443 613 chr2L 16056141 16056154 chr2L 16056232 16056250 5 95 3.5 3.5 3.5 1.1 109 chr2L 16056141 intron beat-Ia + chr2L 16056196 intron beat-Ia + chr2L 16056250 intron beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-443 614 chr2L 16062265 16062289 chr2L 16062595 16062621 10 330 14.0 8.0 11.0 0.8 356 chr2L 16062265 intron beat-Ia + chr2L 16062443 intron beat-Ia + chr2L 16062621 intron beat-Ia + chr2L_10_16060001 chr2L_16060001 RAL-443 615 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 17.0 28.5 22.8 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-443 616 chr2L 16098926 16098952 chr2L 16099034 16099060 5 108 15.5 22.5 19.0 0.2 134 chr2L 16098926 intergenic not near genes chr2L 16098993 intergenic not near genes chr2L 16099060 intergenic not near genes chr2L_5_16095001 chr2L_16095001 RAL-443 617 chr2L 16123465 16123521 chr2L 16123567 16123618 6 100 19.5 21.0 20.2 0.3 153 chr2L 16123465 intergenic not near genes chr2L 16123542 intergenic not near genes chr2L 16123618 intergenic not near genes chr2L_6_16120001 chr2L_16120001 RAL-443 618 chr2L 16141148 16141193 chr2L 16146375 16146420 copia 17 5224 5.0 3.5 4.2 3.3 5272 chr2L 16141148 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146420 intergenic not near genes chr2L_17_16140001 chr2L_16140001 RAL-443 619 chr2L 16153720 16153766 chr2L 16160794 16160840 297 22 7076 5.5 2.5 4.0 4.4 7120 chr2L 16153720 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160840 intergenic not near genes chr2L_22_16155001 chr2L_16155001 RAL-443 620 chr2L 16207054 16207087 chr2L 16207151 16207184 4 97 12.5 14.0 13.2 0.3 130 chr2L 16207054 intergenic not near genes chr2L 16207119 intergenic not near genes chr2L 16207184 intergenic not near genes chr2L_4_16205001 chr2L_16205001 RAL-443 621 chr2L 16242065 16242088 chr2L 16242166 16242200 9 108 3.0 0.0 1.5 3.6 135 chr2L 16242065 5` UTR CG42818 + chr2L 16242132 exon CG42818 + chr2L 16242200 exon CG42818 + chr2L_9_16240001 chr2L_16240001 RAL-443 622 chr2L 16243211 16243364 chr2L 16243304 16243451 5 95 21.5 20.5 21.0 0.2 240 chr2L 16243211 exon CG42818 + chr2L 16243331 exon CG42818 + chr2L 16243451 exon CG42818 + chr2L_5_16240001 chr2L_16240001 RAL-443 623 chr2L 16243695 16243854 chr2L 16243798 16243969 9 114 21.5 19.5 20.5 0.4 274 chr2L 16243695 exon CG42818 + chr2L 16243832 exon CG42818 + chr2L 16243969 exon CG42818 + chr2L_9_16240001 chr2L_16240001 RAL-443 624 chr2L 16254884 16254917 chr2L 16255153 16255179 5 274 19.5 19.0 19.2 0.2 295 chr2L 16254884 intron PRL-1 - chr2L 16255032 intron PRL-1 - chr2L 16255179 intron PRL-1 - chr2L_5_16255001 chr2L_16255001 RAL-443 625 chr2L 16298710 16298746 chr2L 16298809 16298845 7 99 5.5 4.0 4.8 1.2 135 chr2L 16298710 intron heix - chr2L 16298778 intron heix - chr2L 16298845 intron heix - chr2L_7_16295001 chr2L_16295001 RAL-443 626 chr2L 16329513 16329553 chr2L 16329612 16329652 13 99 16.5 18.0 17.2 0.7 139 chr2L 16329513 intergenic mRpL4 -,CG4440 + chr2L 16329582 intergenic CG4440 +,mRpL4 - chr2L 16329652 intergenic CG4440 + chr2L_13_16325001 chr2L_16325001 RAL-443 627 chr2L 16354565 16354777 chr2L 16354679 16354884 6 110 1.5 11.0 6.2 0.8 319 chr2L 16354565 intergenic CG4455 +,CaBP1 - chr2L 16354724 intergenic CaBP1 -,CG4455 + chr2L 16354884 intergenic CaBP1 -,CG4455 + chr2L_6_16350001 chr2L_16350001 RAL-443 628 chr2L 16363925 16363969 chr2L 16364189 16364235 19 265 4.5 6.5 5.5 2.9 310 chr2L 16363925 intergenic not near genes chr2L 16364080 intergenic not near genes chr2L 16364235 intergenic not near genes chr2L_19_16360001 chr2L_16360001 RAL-443 629 chr2L 16408100 16408155 chr2L 16408227 16408269 5 120 0.0 3.5 1.8 1.8 169 chr2L 16408100 intron CG5888 - chr2L 16408184 intron CG5888 - chr2L 16408269 intron CG5888 - chr2L_5_16405001 chr2L_16405001 RAL-443 630 chr2L 16432581 16432617 chr2L 16432687 16432734 8 113 9.0 6.0 7.5 0.9 153 chr2L 16432581 intron CG5888 - chr2L 16432658 intron CG5888 - chr2L 16432734 intron CG5888 - chr2L_8_16430001 chr2L_16430001 RAL-443 631 chr2L 16443984 16444007 chr2L 16444076 16444102 7 96 20.5 13.5 17.0 0.4 118 chr2L 16443984 intron CG5888 - chr2L 16444043 intron CG5888 - chr2L 16444102 intron CG5888 - chr2L_7_16440001 chr2L_16440001 RAL-443 632 chr2L 16507952 16507967 chr2L 16508045 16508075 13 106 0.0 12.5 6.2 1.8 123 chr2L 16507952 intergenic CG5953 -,Tpr2 + chr2L 16508014 intergenic CG5953 -,Tpr2 + chr2L 16508075 intergenic CG5953 -,Tpr2 + chr2L_13_16505001 chr2L_16505001 RAL-443 633 chr2L 16511966 16511993 chr2L 16519080 16519127 HMS-Beagle 9 7132 5.0 4.5 4.8 1.6 7161 chr2L 16511966 intron CG5953 - chr2L 16515546 intron CG5953 - chr2L 16519127 intron CG5953 - chr2L_9_16515001 chr2L_16515001 RAL-443 634 chr2L 16572198 16572231 chr2L 16572301 16572335 7 109 19.0 11.0 15.0 0.4 137 chr2L 16572198 intron CG42389 + chr2L 16572266 intron CG42389 + chr2L 16572335 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-443 635 chr2L 16589802 16589826 chr2L 16589912 16589937 5 110 2.5 5.0 3.8 1.0 135 chr2L 16589802 intron CG42389 + chr2L 16589870 intron CG42389 + chr2L 16589937 intron CG42389 + chr2L_5_16585001 chr2L_16585001 RAL-443 636 chr2L 16670422 16670447 chr2L 16670509 16670539 9 89 11.0 14.0 12.5 0.7 117 chr2L 16670422 intron Trpgamma - chr2L 16670480 intron Trpgamma - chr2L 16670539 intron Trpgamma - chr2L_9_16670001 chr2L_16670001 RAL-443 637 chr2L 16688365 16688407 chr2L 16688466 16688488 7 98 14.5 21.0 17.8 0.4 123 chr2L 16688365 intron grp + chr2L 16688426 intron grp + chr2L 16688488 intron grp + chr2L_7_16685001 chr2L_16685001 RAL-443 638 chr2L 16694111 16694160 chr2L 16694217 16694265 5 106 5.0 6.0 5.5 0.8 154 chr2L 16694111 intron grp + chr2L 16694188 intron grp + chr2L 16694265 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-443 639 chr2L 16695238 16695289 chr2L 16695342 16695393 16 93 15.5 15.5 15.5 1.0 155 chr2L 16695238 intron grp + chr2L 16695316 intron grp + chr2L 16695393 intron grp + chr2L_16_16695001 chr2L_16695001 RAL-443 640 chr2L 16697049 16697074 chr2L 16697262 16697283 12 212 5.0 1.0 3.0 3.0 234 chr2L 16697049 intron grp + chr2L 16697166 intron grp + chr2L 16697283 intron grp + chr2L_12_16695001 chr2L_16695001 RAL-443 641 chr2L 16709062 16709102 chr2L 16709166 16709206 9 101 13.0 18.5 15.8 0.5 144 chr2L 16709062 intron CG31808 - chr2L 16709134 intron CG31808 - chr2L 16709206 intron CG31808 - chr2L_9_16705001 chr2L_16705001 RAL-443 642 chr2L 16716932 16716983 chr2L 16717069 16717119 12 134 10.0 11.5 10.8 1.0 187 chr2L 16716932 intron Cyt-c-d + chr2L 16717026 intron Cyt-c-d + chr2L 16717119 intron Cyt-c-d + chr2L_12_16715001 chr2L_16715001 RAL-443 643 chr2L 16764952 16764974 chr2L 16765052 16765073 4 100 12.0 11.5 11.8 0.3 121 chr2L 16764952 intergenic not near genes chr2L 16765012 intergenic not near genes chr2L 16765073 intergenic not near genes chr2L_4_16765001 chr2L_16765001 RAL-443 644 chr2L 16799476 16799499 chr2L 16799638 16799661 7 161 0.5 4.5 2.5 2.0 185 chr2L 16799476 intron Ugt36Bc + chr2L 16799568 intron Ugt36Bc + chr2L 16799661 intron Ugt36Bc + chr2L_7_16795001 chr2L_16795001 RAL-443 645 chr2L 16949591 16949640 chr2L 16949695 16949737 14 100 18.0 19.0 18.5 0.7 146 chr2L 16949591 intron CR44393 - chr2L 16949664 intron CR44393 - chr2L 16949737 intron CR44393 - chr2L_14_16945001 chr2L_16945001 RAL-443 646 chr2L 16958090 16958132 chr2L 16962898 16962913 Doc 18 4806 5.0 3.5 4.2 3.5 4823 chr2L 16958090 intergenic not near genes chr2L 16960502 intergenic not near genes chr2L 16962913 intergenic not near genes chr2L_18_16960001 chr2L_16960001 RAL-443 647 chr2L 16968215 16968260 chr2L 16968324 16968370 5 108 13.0 13.0 13.0 0.4 155 chr2L 16968215 intergenic not near genes chr2L 16968292 intergenic not near genes chr2L 16968370 intergenic not near genes chr2L_5_16965001 chr2L_16965001 RAL-443 648 chr2L 16987545 16987571 chr2L 16987640 16987667 5 94 27.0 25.0 26.0 0.2 122 chr2L 16987545 intron beat-IIIb + chr2L 16987606 intron beat-IIIb + chr2L 16987667 intron beat-IIIb + chr2L_5_16985001 chr2L_16985001 RAL-443 649 chr2L 16995530 16995548 chr2L 16995600 16995646 5 83 7.0 8.0 7.5 0.6 116 chr2L 16995530 intergenic not near genes chr2L 16995588 intergenic not near genes chr2L 16995646 intergenic not near genes chr2L_5_16995001 chr2L_16995001 RAL-443 650 chr2L 17000098 17000143 chr2L 17000240 17000285 13 134 3.5 4.5 4.0 2.6 187 chr2L 17000098 intergenic not near genes chr2L 17000192 intergenic not near genes chr2L 17000285 intergenic not near genes chr2L_13_17000001 chr2L_17000001 RAL-443 651 chr2L 17005398 17005431 chr2L 17005515 17005548 6 114 7.5 9.5 8.5 0.6 150 chr2L 17005398 intergenic not near genes chr2L 17005473 intergenic not near genes chr2L 17005548 intergenic not near genes chr2L_6_17005001 chr2L_17005001 RAL-443 652 chr2L 17032483 17032522 chr2L 17032588 17032627 14 102 4.5 2.5 3.5 3.1 144 chr2L 17032483 intergenic not near genes chr2L 17032555 intergenic not near genes chr2L 17032627 intergenic not near genes chr2L_14_17030001 chr2L_17030001 RAL-443 653 chr2L 17052416 17052436 chr2L 17052548 17052568 4 131 7.5 5.0 6.2 0.6 152 chr2L 17052416 intergenic not near genes chr2L 17052492 intergenic not near genes chr2L 17052568 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-443 654 chr2L 17062739 17062762 chr2L 17062841 17062862 8 100 9.0 5.0 7.0 1.0 123 chr2L 17062739 intergenic not near genes chr2L 17062800 intergenic not near genes chr2L 17062862 intergenic not near genes chr2L_8_17060001 chr2L_17060001 RAL-443 655 chr2L 17070179 17070216 chr2L 17070295 17070332 18 115 6.0 6.0 6.0 2.6 153 chr2L 17070179 intergenic not near genes chr2L 17070256 intergenic not near genes chr2L 17070332 intergenic not near genes chr2L_18_17070001 chr2L_17070001 RAL-443 656 chr2L 17087367 17087390 chr2L 17087505 17087521 4 136 9.5 9.0 9.2 0.4 154 chr2L 17087367 intergenic CG12620 + chr2L 17087444 intergenic CG12620 + chr2L 17087521 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-443 657 chr2L 17088827 17088876 chr2L 17088930 17088953 7 94 10.0 10.0 10.0 0.6 126 chr2L 17088827 3` UTR CG12620 + chr2L 17088890 3` UTR CG12620 + chr2L 17088953 3` UTR CG12620 + chr2L_7_17085001 chr2L_17085001 RAL-443 658 chr2L 17120821 17120873 chr2L 17120920 17120972 6 96 18.5 16.5 17.5 0.3 151 chr2L 17120821 intergenic not near genes chr2L 17120896 intergenic not near genes chr2L 17120972 intergenic not near genes chr2L_6_17120001 chr2L_17120001 RAL-443 659 chr2L 17167548 17167590 chr2L 17167809 17167826 pogo 11 255 6.0 3.5 4.8 1.9 278 chr2L 17167548 intron,intron CG34106 +,beat-IIIa + chr2L 17167687 intron,intron CG34106 +,beat-IIIa + chr2L 17167826 intron,intron CG34106 +,beat-IIIa + chr2L_11_17165001 chr2L_17165001 RAL-443 660 chr2L 17181423 17181475 chr2L 17181527 17181579 9 101 10.5 15.0 12.8 0.7 156 chr2L 17181423 exon Gr36c + chr2L 17181501 exon Gr36c + chr2L 17181579 exon Gr36c + chr2L_9_17180001 chr2L_17180001 RAL-443 661 chr2L 17193849 17193870 chr2L 17193951 17193977 5 106 0.0 0.0 0.0 5.0 128 chr2L 17193849 intron beat-IIIc - chr2L 17193913 intron beat-IIIc - chr2L 17193977 intron beat-IIIc - chr2L_5_17190001 chr2L_17190001 RAL-443 662 chr2L 17199141 17199186 chr2L 17200628 17200673 hobo 13 1486 4.0 3.0 3.5 2.9 1532 chr2L 17199141 intron beat-IIIc - chr2L 17199907 intron beat-IIIc - chr2L 17200673 intron beat-IIIc - chr2L_13_17195001 chr2L_17195001 RAL-443 663 chr2L 17226724 17226767 chr2L 17226823 17226869 10 98 13.5 14.5 14.0 0.7 145 chr2L 17226724 intron beat-IIIc - chr2L 17226796 intron beat-IIIc - chr2L 17226869 intron beat-IIIc - chr2L_10_17225001 chr2L_17225001 RAL-443 664 chr2L 17238819 17238864 chr2L 17238919 17238969 6 104 12.5 9.5 11.0 0.5 150 chr2L 17238819 intron beat-IIIc - chr2L 17238894 intron beat-IIIc - chr2L 17238969 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-443 665 chr2L 17240548 17240584 chr2L 17240655 17240678 7 104 15.0 11.5 13.2 0.5 130 chr2L 17240548 intron beat-IIIc - chr2L 17240613 intron beat-IIIc - chr2L 17240678 intron beat-IIIc - chr2L_7_17240001 chr2L_17240001 RAL-443 666 chr2L 17264739 17264771 chr2L 17264833 17264861 5 97 4.5 5.5 5.0 0.8 122 chr2L 17264739 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264861 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-443 667 chr2L 17273182 17273214 chr2L 17277985 17278017 F-element 9 4799 5.5 1.5 3.5 2.0 4835 chr2L 17273182 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278017 intergenic not near genes chr2L_9_17275001 chr2L_17275001 RAL-443 668 chr2L 17273223 17273228 chr2L 17277976 17277988 F-element 4 4767 4.5 1.0 2.8 1.1 4765 chr2L 17273223 intergenic not near genes chr2L 17275606 intergenic not near genes chr2L 17277988 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-443 669 chr2L 17351939 17351952 chr2L 17352061 17352074 5 122 10.0 18.5 14.2 0.3 135 chr2L 17351939 intergenic not near genes chr2L 17352006 intergenic not near genes chr2L 17352074 intergenic not near genes chr2L_5_17350001 chr2L_17350001 RAL-443 670 chr2L 17380590 17380610 chr2L 17380708 17380748 4 120 20.5 30.5 25.5 0.2 158 chr2L 17380590 intron Lrch - chr2L 17380669 intron Lrch - chr2L 17380748 intron Lrch - chr2L_4_17380001 chr2L_17380001 RAL-443 671 chr2L 17424836 17424881 chr2L 17424935 17424980 11 98 13.0 15.0 14.0 0.7 144 chr2L 17424836 intron Dif - chr2L 17424908 intron Dif - chr2L 17424980 intron Dif - chr2L_11_17420001 chr2L_17420001 RAL-443 672 chr2L 17425748 17425793 chr2L 17425895 17425940 12 146 6.0 13.0 9.5 1.1 192 chr2L 17425748 intron Dif - chr2L 17425844 intron Dif - chr2L 17425940 intron Dif - chr2L_12_17425001 chr2L_17425001 RAL-443 673 chr2L 17432015 17432038 chr2L 17432142 17432144 1360 6 121 0.0 5.0 2.5 1.7 129 chr2L 17432015 intron Dif - chr2L 17432080 intron Dif - chr2L 17432144 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-443 674 chr2L 17517836 17517880 chr2L 17517938 17517983 20 100 4.0 4.0 4.0 4.0 147 chr2L 17517836 intron Dhc36C + chr2L 17517910 intron Dhc36C + chr2L 17517983 intron Dhc36C + chr2L_20_17515001 chr2L_17515001 RAL-443 675 chr2L 17543574 17543614 chr2L 17543687 17543699 9 105 17.5 16.0 16.8 0.5 125 chr2L 17543574 intergenic not near genes chr2L 17543636 intergenic not near genes chr2L 17543699 intergenic not near genes chr2L_9_17540001 chr2L_17540001 RAL-443 676 chr2L 17564149 17564181 chr2L 17564252 17564284 4 103 14.0 16.0 15.0 0.2 135 chr2L 17564149 intergenic not near genes chr2L 17564216 intergenic not near genes chr2L 17564284 intergenic not near genes chr2L_4_17560001 chr2L_17560001 RAL-443 677 chr2L 17605820 17605865 chr2L 17605916 17605963 8 92 18.0 15.5 16.8 0.4 143 chr2L 17605820 intergenic not near genes chr2L 17605892 intergenic not near genes chr2L 17605963 intergenic not near genes chr2L_8_17605001 chr2L_17605001 RAL-443 678 chr2L 17623653 17623695 chr2L 17623903 17623945 11 247 11.0 8.0 9.5 1.0 292 chr2L 17623653 intergenic not near genes chr2L 17623799 intergenic not near genes chr2L 17623945 intergenic not near genes chr2L_11_17620001 chr2L_17620001 RAL-443 679 chr2L 17675923 17675957 chr2L 17676022 17676046 4 96 16.0 10.0 13.0 0.3 123 chr2L 17675923 intron CadN - chr2L 17675984 intron CadN - chr2L 17676046 intron CadN - chr2L_4_17675001 chr2L_17675001 RAL-443 680 chr2L 17687499 17687520 chr2L 17692264 17692285 F-element 6 4765 6.5 7.0 6.8 0.8 4786 chr2L 17687499 intron CadN - chr2L 17689892 intron CadN - chr2L 17692285 intron CadN - chr2L_6_17685001 chr2L_17685001 RAL-443 681 chr2L 17723772 17723800 chr2L 17723885 17723912 11 111 2.5 5.0 3.8 2.3 140 chr2L 17723772 intron CadN - chr2L 17723842 intron CadN - chr2L 17723912 intron CadN - chr2L_11_17720001 chr2L_17720001 RAL-443 682 chr2L 17727865 17727879 chr2L 17729344 17729366 hobo 5 1483 6.0 9.0 7.5 0.6 1501 chr2L 17727865 intron CadN - chr2L 17728616 intron CadN - chr2L 17729366 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-443 683 chr2L 17765078 17765098 chr2L 17765231 17765256 6 157 11.0 10.0 10.5 0.5 178 chr2L 17765078 intron CadN - chr2L 17765167 intron CadN - chr2L 17765256 intron CadN - chr2L_6_17765001 chr2L_17765001 RAL-443 684 chr2L 17790199 17790241 chr2L 17790302 17790341 8 102 10.0 9.5 9.8 0.7 142 chr2L 17790199 intron CadN2 - chr2L 17790270 intron CadN2 - chr2L 17790341 intron CadN2 - chr2L_8_17790001 chr2L_17790001 RAL-443 685 chr2L 17796007 17796044 chr2L 17796108 17796145 7 101 12.0 13.0 12.5 0.5 138 chr2L 17796007 intron CadN2 - chr2L 17796076 intron CadN2 - chr2L 17796145 intron CadN2 - chr2L_7_17795001 chr2L_17795001 RAL-443 686 chr2L 17819899 17819940 chr2L 17825123 17825131 copia 9 5218 5.5 3.0 4.2 1.7 5232 chr2L 17819899 intron CadN2 - chr2L 17822515 intron CadN2 - chr2L 17825131 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-443 687 chr2L 17828221 17828265 chr2L 17828345 17828389 16 121 3.5 4.5 4.0 3.2 168 chr2L 17828221 intron CadN2 - chr2L 17828305 intron CadN2 - chr2L 17828389 intron CadN2 - chr2L_16_17825001 chr2L_17825001 RAL-443 688 chr2L 17855475 17855518 chr2L 17855573 17855608 9 96 13.5 11.5 12.5 0.7 133 chr2L 17855475 intron CadN2 - chr2L 17855542 intron CadN2 - chr2L 17855608 intron CadN2 - chr2L_9_17855001 chr2L_17855001 RAL-443 689 chr2L 17879984 17880029 chr2L 17880090 17880126 7 102 6.5 9.0 7.8 0.8 142 chr2L 17879984 intergenic not near genes chr2L 17880055 intergenic not near genes chr2L 17880126 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-443 690 chr2L 17880587 17880617 chr2L 17880707 17880749 5 128 14.0 12.0 13.0 0.4 162 chr2L 17880587 intergenic not near genes chr2L 17880668 intergenic not near genes chr2L 17880749 intergenic not near genes chr2L_5_17880001 chr2L_17880001 RAL-443 691 chr2L 17911957 17911981 chr2L 17914149 17914164 pogo 4 2192 3.0 9.0 6.0 0.6 2207 chr2L 17911957 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914164 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-443 692 chr2L 17944414 17944452 chr2L 17944597 17944630 6 180 9.5 11.0 10.2 0.5 216 chr2L 17944414 intergenic not near genes chr2L 17944522 intergenic not near genes chr2L 17944630 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-443 693 chr2L 17951924 17951973 chr2L 17953411 17953460 hobo 23 1483 8.0 6.5 7.2 2.8 1536 chr2L 17951924 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953460 intergenic not near genes chr2L_23_17950001 chr2L_17950001 RAL-443 694 chr2L 17990006 17990023 chr2L 17990067 17990119 13 83 17.0 11.0 14.0 0.9 113 chr2L 17990006 intergenic Prosbeta5R2 + chr2L 17990062 intergenic Prosbeta5R2 + chr2L 17990119 intergenic Prosbeta5R2 + chr2L_13_17990001 chr2L_17990001 RAL-443 695 chr2L 17986754 17986787 chr2L 17991462 17991495 10 4708 27.0 34.0 30.5 0.3 4741 chr2L 17986754 exon CG5681 + chr2L 17989124 intergenic not near genes chr2L 17991495 3` UTR Prosbeta5R2 + chr2L_10_17985001 chr2L_17985001 RAL-443 696 chr2L 18026974 18026997 chr2L 18027325 18027357 6 357 20.5 13.5 17.0 0.3 383 chr2L 18026974 5` UTR rdo + chr2L 18027166 intron rdo + chr2L 18027357 intron rdo + chr2L_6_18025001 chr2L_18025001 RAL-443 697 chr2L 18041442 18041461 chr2L 18041716 18041740 4 281 16.0 15.0 15.5 0.2 298 chr2L 18041442 intron rdo + chr2L 18041591 intron rdo + chr2L 18041740 intron rdo + chr2L_4_18040001 chr2L_18040001 RAL-443 698 chr2L 18051887 18051905 chr2L 18061030 18061072 roo 5 9158 4.0 8.5 6.2 0.7 9185 chr2L 18051887 intron rdo + chr2L 18056480 intron rdo + chr2L 18061072 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-443 699 chr2L 18066343 18066379 chr2L 18066442 18066454 8 93 13.0 10.5 11.8 0.6 111 chr2L 18066343 intron rdo + chr2L 18066398 intron rdo + chr2L 18066454 intron rdo + chr2L_8_18065001 chr2L_18065001 RAL-443 700 chr2L 18079825 18079838 chr2L 18079929 18079931 4 102 11.5 15.0 13.2 0.3 106 chr2L 18079825 intron Arr1 + chr2L 18079878 intron Arr1 + chr2L 18079931 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-443 701 chr2L 18110097 18110103 chr2L 18110199 18110218 6 112 15.0 17.5 16.2 0.3 121 chr2L 18110097 intergenic not near genes chr2L 18110158 intergenic not near genes chr2L 18110218 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-443 702 chr2L 18134833 18134856 chr2L 18135322 18135346 8 484 11.0 12.0 11.5 0.6 513 chr2L 18134833 intron kel - chr2L 18135090 intron kel - chr2L 18135346 intron kel - chr2L_8_18135001 chr2L_18135001 RAL-443 703 chr2L 18148823 18148857 chr2L 18148925 18148973 8 110 19.5 15.5 17.5 0.4 150 chr2L 18148823 intron Socs36E - chr2L 18148898 intron Socs36E - chr2L 18148973 intron Socs36E - chr2L_8_18145001 chr2L_18145001 RAL-443 704 chr2L 18235066 18235091 chr2L 18235197 18235228 6 135 11.0 11.0 11.0 0.5 162 chr2L 18235066 intron CG42750 - chr2L 18235147 intron CG42750 - chr2L 18235228 intron CG42750 - chr2L_6_18235001 chr2L_18235001 RAL-443 705 chr2L 18245503 18245554 chr2L 18245677 18245728 8 174 16.0 11.5 13.8 0.5 225 chr2L 18245503 intron CG42750 - chr2L 18245616 intron CG42750 - chr2L 18245728 intron CG42750 - chr2L_8_18245001 chr2L_18245001 RAL-443 706 chr2L 18254823 18254836 chr2L 18254943 18254951 6 119 13.0 14.0 13.5 0.4 128 chr2L 18254823 intron CG42750 - chr2L 18254887 intron CG42750 - chr2L 18254951 intron CG42750 - chr2L_6_18250001 chr2L_18250001 RAL-443 707 chr2L 18264042 18264083 chr2L 18264139 18264159 5 92 21.5 16.5 19.0 0.2 117 chr2L 18264042 intron CG42750 - chr2L 18264100 intron CG42750 - chr2L 18264159 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-443 708 chr2L 18274036 18274065 chr2L 18274132 18274171 7 101 13.0 10.0 11.5 0.6 135 chr2L 18274036 intron CG42750 - chr2L 18274104 intron CG42750 - chr2L 18274171 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-443 709 chr2L 18338589 18338599 chr2L 18338710 18338720 5 121 6.0 19.5 12.8 0.4 131 chr2L 18338589 intron Fas3 + chr2L 18338654 intron Fas3 + chr2L 18338720 intron Fas3 + chr2L_5_18335001 chr2L_18335001 RAL-443 710 chr2L 18350653 18350677 chr2L 18350759 18350784 5 105 9.5 12.5 11.0 0.4 131 chr2L 18350653 intron Fas3 + chr2L 18350718 intron Fas3 + chr2L 18350784 intron Fas3 + chr2L_5_18350001 chr2L_18350001 RAL-443 711 chr2L 18394744 18394795 chr2L 18394953 18395004 21 205 12.5 16.5 14.5 1.4 260 chr2L 18394744 intergenic not near genes chr2L 18394874 intergenic not near genes chr2L 18395004 intergenic not near genes chr2L_21_18390001 chr2L_18390001 RAL-443 712 chr2L 18408014 18408052 chr2L 18412818 18412856 Doc 11 4801 5.5 8.0 6.8 1.4 4842 chr2L 18408014 intergenic not near genes chr2L 18410435 intergenic not near genes chr2L 18412856 intergenic not near genes chr2L_11_18410001 chr2L_18410001 RAL-443 713 chr2L 18538546 18538595 chr2L 18538648 18538696 17 100 1.0 6.0 3.5 3.8 150 chr2L 18538546 intron Pde11 - chr2L 18538621 intron Pde11 - chr2L 18538696 intron Pde11 - chr2L_17_18535001 chr2L_18535001 RAL-443 714 chr2L 18561539 18561577 chr2L 18561651 18561689 18 114 6.5 5.0 5.8 2.6 150 chr2L 18561539 intron Pde11 - chr2L 18561614 intron Pde11 - chr2L 18561689 intron Pde11 - chr2L_18_18560001 chr2L_18560001 RAL-443 715 chr2L 18568303 18568330 chr2L 18568403 18568430 11 98 9.0 10.5 9.8 1.0 127 chr2L 18568303 intron Pde11 - chr2L 18568366 intron Pde11 - chr2L 18568430 intron Pde11 - chr2L_11_18565001 chr2L_18565001 RAL-443 716 chr2L 18584756 18584780 chr2L 18584861 18584885 4 105 14.5 19.0 16.8 0.2 129 chr2L 18584756 intron Pde11 - chr2L 18584820 intron Pde11 - chr2L 18584885 intron Pde11 - chr2L_4_18580001 chr2L_18580001 RAL-443 717 chr2L 18703028 18703047 chr2L 18703107 18703141 4 88 9.5 13.5 11.5 0.3 113 chr2L 18703028 5` UTR CG10376 - chr2L 18703084 5` UTR CG10376 - chr2L 18703141 intergenic CG10376 -,CG10343 + chr2L_4_18700001 chr2L_18700001 RAL-443 718 chr2L 18728514 18728543 chr2L 18728601 18728648 7 97 10.5 10.5 10.5 0.6 134 chr2L 18728514 intron CG10348 - chr2L 18728581 intron CG10348 - chr2L 18728648 intron CG10348 - chr2L_7_18725001 chr2L_18725001 RAL-443 719 chr2L 18767647 18767657 chr2L 18767730 18767756 5 91 12.0 18.0 15.0 0.3 109 chr2L 18767647 intron ham - chr2L 18767702 intron ham - chr2L 18767756 intron ham - chr2L_5_18765001 chr2L_18765001 RAL-443 720 chr2L 18807584 18807630 chr2L 18807686 18807733 14 102 12.5 12.5 12.5 1.0 149 chr2L 18807584 intergenic not near genes chr2L 18807658 intergenic not near genes chr2L 18807733 intergenic not near genes chr2L_14_18805001 chr2L_18805001 RAL-443 721 chr2L 18811401 18811429 chr2L 18811503 18811531 5 102 18.0 17.5 17.8 0.3 130 chr2L 18811401 intergenic CG10570 -,CG42502 - chr2L 18811466 intergenic CG10570 -,CG42502 - chr2L 18811531 intergenic not near genes chr2L_5_18810001 chr2L_18810001 RAL-443 722 chr2L 18811647 18811678 chr2L 18811876 18811907 5 229 14.0 12.0 13.0 0.4 260 chr2L 18811647 intergenic not near genes chr2L 18811777 intergenic not near genes chr2L 18811907 intergenic not near genes chr2L_5_18810001 chr2L_18810001 RAL-443 723 chr2L 18816722 18816772 chr2L 18816874 18816917 4 150 10.5 15.5 13.0 0.3 195 chr2L 18816722 intergenic not near genes chr2L 18816820 intergenic not near genes chr2L 18816917 intergenic not near genes chr2L_4_18815001 chr2L_18815001 RAL-443 724 chr2L 18876844 18876872 chr2L 18876942 18876970 8 97 16.0 16.5 16.2 0.5 126 chr2L 18876844 intron tup - chr2L 18876907 intron tup - chr2L 18876970 intron tup - chr2L_8_18875001 chr2L_18875001 RAL-443 725 chr2L 18898386 18898393 chr2L 18898488 18898495 4 102 7.0 0.0 3.5 0.9 109 chr2L 18898386 intergenic not near genes chr2L 18898440 intergenic not near genes chr2L 18898495 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-443 726 chr2L 18898396 18898406 chr2L 18898487 18898508 5 100 5.0 0.0 2.5 1.4 112 chr2L 18898396 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-443 727 chr2L 18898407 18898424 chr2L 18898479 18898526 12 98 2.5 0.0 1.2 5.5 119 chr2L 18898407 intergenic not near genes chr2L 18898466 intergenic not near genes chr2L 18898526 intergenic not near genes chr2L_12_18895001 chr2L_18895001 RAL-443 728 chr2L 18902604 18902615 chr2L 18902905 18902916 4 301 12.0 4.5 8.2 0.4 312 chr2L 18902604 intergenic not near genes chr2L 18902760 intergenic not near genes chr2L 18902916 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-443 729 chr2L 18902622 18902653 chr2L 18902904 18902954 11 297 5.5 4.5 5.0 1.8 332 chr2L 18902622 intergenic not near genes chr2L 18902788 intergenic not near genes chr2L 18902954 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-443 730 chr2L 18926570 18926591 chr2L 18926695 18926718 6 126 12.0 12.0 12.0 0.5 148 chr2L 18926570 intron ssp3 - chr2L 18926644 intron ssp3 - chr2L 18926718 intron ssp3 - chr2L_6_18925001 chr2L_18925001 RAL-443 731 chr2L 19075856 19075865 chr2L 19075988 19075998 4 133 19.0 16.5 17.8 0.2 142 chr2L 19075856 intergenic not near genes chr2L 19075927 intergenic not near genes chr2L 19075998 intergenic not near genes chr2L_4_19075001 chr2L_19075001 RAL-443 732 chr2L 19075869 19076072 chr2L 19075987 19076166 19 117 7.5 16.5 12.0 1.5 297 chr2L 19075869 intergenic not near genes chr2L 19076018 intergenic not near genes chr2L 19076166 intergenic not near genes chr2L_19_19075001 chr2L_19075001 RAL-443 733 chr2L 19147377 19147392 chr2L 19154403 19154447 297 7 7040 4.0 7.0 5.5 1.1 7070 chr2L 19147377 intron brat + chr2L 19150912 intron brat + chr2L 19154447 intron brat + chr2L_7_19150001 chr2L_19150001 RAL-443 734 chr2L 19183326 19183373 chr2L 19183426 19183473 7 99 8.5 10.0 9.2 0.7 147 chr2L 19183326 3` UTR CR17567 - chr2L 19183400 3` UTR CR17567 - chr2L 19183473 intron CR17567 - chr2L_7_19180001 chr2L_19180001 RAL-443 735 chr2L 19189720 19189753 chr2L 19189818 19189826 7 94 21.0 20.0 20.5 0.3 106 chr2L 19189720 3` UTR pigeon + chr2L 19189773 3` UTR pigeon + chr2L 19189826 3` UTR pigeon + chr2L_7_19185001 chr2L_19185001 RAL-443 736 chr2L 19189954 19189981 chr2L 19190128 19190155 4 174 21.5 17.0 19.2 0.2 201 chr2L 19189954 intergenic pigeon +,drl + chr2L 19190054 intergenic pigeon +,drl + chr2L 19190155 intergenic drl +,pigeon + chr2L_4_19190001 chr2L_19190001 RAL-443 737 chr2L 19191770 19191784 chr2L 19191895 19191913 6 128 5.5 7.0 6.2 0.8 143 chr2L 19191770 intron drl + chr2L 19191842 intron drl + chr2L 19191913 intron drl + chr2L_6_19190001 chr2L_19190001 RAL-443 738 chr2L 19232565 19232605 chr2L 19232804 19232809 4 230 9.5 9.0 9.2 0.4 244 chr2L 19232565 intergenic not near genes chr2L 19232687 intergenic not near genes chr2L 19232809 intergenic not near genes chr2L_4_19230001 chr2L_19230001 RAL-443 739 chr2L 19246811 19246852 chr2L 19246910 19246953 11 99 20.5 23.5 22.0 0.5 142 chr2L 19246811 intergenic not near genes chr2L 19246882 intergenic not near genes chr2L 19246953 intergenic not near genes chr2L_11_19245001 chr2L_19245001 RAL-443 740 chr2L 19251687 19251719 chr2L 19251807 19251811 9 113 19.0 18.5 18.8 0.5 124 chr2L 19251687 intergenic not near genes chr2L 19251749 intergenic not near genes chr2L 19251811 intergenic not near genes chr2L_9_19250001 chr2L_19250001 RAL-443 741 chr2L 19344996 19345040 chr2L 19357225 19357269 blood 9 12225 3.0 3.5 3.2 2.1 12273 chr2L 19344996 intron dnt - chr2L 19351132 intron dnt - chr2L 19357269 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-443 742 chr2L 19357527 19357538 chr2L 19357637 19357639 6 108 12.0 8.0 10.0 0.5 112 chr2L 19357527 intron dnt - chr2L 19357583 intron dnt - chr2L 19357639 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-443 743 chr2L 19357539 19357567 chr2L 19357635 19357677 17 102 4.0 7.5 5.8 2.5 138 chr2L 19357539 intron dnt - chr2L 19357608 intron dnt - chr2L 19357677 intron dnt - chr2L_17_19355001 chr2L_19355001 RAL-443 744 chr2L 19359165 19359210 chr2L 19359278 19359294 14 109 15.0 15.0 15.0 0.9 129 chr2L 19359165 intron dnt - chr2L 19359230 intron dnt - chr2L 19359294 intron dnt - chr2L_14_19355001 chr2L_19355001 RAL-443 745 chr2L 19372958 19373003 chr2L 19373269 19373314 12 306 18.5 12.0 15.2 0.7 356 chr2L 19372958 intergenic CG17349 + chr2L 19373136 intergenic CG17349 + chr2L 19373314 intergenic not near genes chr2L_12_19370001 chr2L_19370001 RAL-443 746 chr2L 19405334 19405630 chr2L 19405479 19405725 20 132 2.0 1.5 1.8 7.1 391 chr2L 19405334 intron Pax - chr2L 19405530 intron Pax - chr2L 19405725 intron Pax - chr2L_20_19405001 chr2L_19405001 RAL-443 747 chr2L 19407699 19407736 chr2L 19407915 19407953 12 214 15.0 9.0 12.0 0.9 254 chr2L 19407699 intron Pax - chr2L 19407826 intron Pax - chr2L 19407953 intron Pax - chr2L_12_19405001 chr2L_19405001 RAL-443 748 chr2L 19441057 19441078 chr2L 19441154 19441175 7 97 8.5 9.5 9.0 0.7 118 chr2L 19441057 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441175 5` UTR CG10237 - chr2L_7_19440001 chr2L_19440001 RAL-443 749 chr2L 19541610 19541662 chr2L 19541715 19541751 12 97 13.0 9.5 11.2 1.0 141 chr2L 19541610 intergenic CG13081 + chr2L 19541680 intergenic CG13081 + chr2L 19541751 intergenic CG13081 + chr2L_12_19540001 chr2L_19540001 RAL-443 750 chr2L 19562511 19562562 chr2L 19562611 19562660 5 94 7.0 8.0 7.5 0.6 149 chr2L 19562511 exon Tep5 + chr2L 19562586 intron Tep5 + chr2L 19562660 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-443 751 chr2L 19620076 19620108 chr2L 19621085 19621111 jockey 7 999 7.5 2.5 5.0 1.2 1035 chr2L 19620076 intron Lar + chr2L 19620594 intron Lar + chr2L 19621111 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-443 752 chr2L 19652557 19652575 chr2L 19674011 19674029 opus 9 21454 12.5 9.0 10.8 0.8 21472 chr2L 19652557 intron Lar + chr2L 19663293 intron Lar + chr2L 19674029 intron Lar + chr2L_9_19660001 chr2L_19660001 RAL-443 753 chr2L 19652578 19652602 chr2L 19674007 19674056 opus 13 21448 7.5 9.0 8.2 1.4 21478 chr2L 19652578 intron Lar + chr2L 19663317 intron Lar + chr2L 19674056 intron Lar + chr2L_13_19660001 chr2L_19660001 RAL-443 754 chr2L 19689042 19689083 chr2L 19689164 19689207 8 122 4.5 2.0 3.2 1.9 165 chr2L 19689042 intron Lar + chr2L 19689124 intron Lar + chr2L 19689207 intron Lar + chr2L_8_19685001 chr2L_19685001 RAL-443 755 chr2L 19697122 19697167 chr2L 19697235 19697235 9 103 3.0 2.5 2.8 2.4 113 chr2L 19697122 intron Lar + chr2L 19697178 intron Lar + chr2L 19697235 intron Lar + chr2L_9_19695001 chr2L_19695001 RAL-443 756 chr2L 19703523 19703569 chr2L 19712679 19712705 roo 10 9149 5.5 1.5 3.5 2.2 9182 chr2L 19703523 intron Lar + chr2L 19708114 intron Lar + chr2L 19712705 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-443 757 chr2L 19712691 19712718 chr2L 19712785 19712812 14 97 2.0 8.5 5.2 2.3 121 chr2L 19712691 intron Lar + chr2L 19712752 intron Lar + chr2L 19712812 intron Lar + chr2L_14_19710001 chr2L_19710001 RAL-443 758 chr2L 19737355 19737388 chr2L 19740832 19740850 1360 5 3473 2.0 3.0 2.5 1.4 3495 chr2L 19737355 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740850 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-443 759 chr2L 19762787 19762836 chr2L 19763049 19763095 pogo 17 257 2.5 7.0 4.8 2.9 308 chr2L 19762787 exon fbp - chr2L 19762941 intron fbp - chr2L 19763095 intron fbp - chr2L_17_19760001 chr2L_19760001 RAL-443 760 chr2L 19773141 19773191 chr2L 19773248 19773298 23 103 8.5 3.0 5.8 3.4 157 chr2L 19773141 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773298 intergenic not near genes chr2L_23_19770001 chr2L_19770001 RAL-443 761 chr2L 19776640 19776655 chr2L 19776740 19776745 11 97 10.5 7.0 8.8 1.1 105 chr2L 19776640 3` UTR CdGAPr - chr2L 19776692 3` UTR CdGAPr - chr2L 19776745 3` UTR CdGAPr - chr2L_11_19775001 chr2L_19775001 RAL-443 762 chr2L 19824417 19824435 chr2L 19824511 19824538 6 101 9.5 12.0 10.8 0.5 121 chr2L 19824417 intron sick + chr2L 19824478 intron sick + chr2L 19824538 intron sick + chr2L_6_19820001 chr2L_19820001 RAL-443 763 chr2L 19837257 19837276 chr2L 19837357 19837376 7 99 10.5 4.0 7.2 0.9 119 chr2L 19837257 intron sick + chr2L 19837316 intron sick + chr2L 19837376 intron sick + chr2L_7_19835001 chr2L_19835001 RAL-443 764 chr2L 19837280 19837308 chr2L 19837355 19837408 9 94 6.0 4.0 5.0 1.5 128 chr2L 19837280 intron sick + chr2L 19837344 intron sick + chr2L 19837408 intron sick + chr2L_9_19835001 chr2L_19835001 RAL-443 765 chr2L 19846240 19846274 chr2L 19846327 19846375 15 98 0.0 3.0 1.5 6.0 135 chr2L 19846240 intron sick + chr2L 19846308 intron sick + chr2L 19846375 intron sick + chr2L_15_19845001 chr2L_19845001 RAL-443 766 chr2L 19901476 19901516 chr2L 19901599 19901638 4 120 14.0 15.0 14.5 0.3 162 chr2L 19901476 intron sick + chr2L 19901557 intron sick + chr2L 19901638 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-443 767 chr2L 19911278 19911325 chr2L 19911386 19911412 7 104 9.0 12.0 10.5 0.6 134 chr2L 19911278 intron,3` UTR sick +,CR43097 - chr2L 19911345 intron,3` UTR sick +,CR43097 - chr2L 19911412 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 RAL-443 768 chr2L 19911709 19911727 chr2L 19911786 19911836 5 103 5.0 4.0 4.5 0.9 127 chr2L 19911709 intron,3` UTR sick +,CR43097 - chr2L 19911772 intron,3` UTR sick +,CR43097 - chr2L 19911836 intron,3` UTR sick +,TotF - chr2L_5_19910001 chr2L_19910001 RAL-443 769 chr2L 19977244 19977259 chr2L 19977614 19977626 4 369 8.0 20.0 14.0 0.3 382 chr2L 19977244 intron CG43861 - chr2L 19977435 intron CG43861 - chr2L 19977626 intron CG43861 - chr2L_4_19975001 chr2L_19975001 RAL-443 770 chr2L 20005862 20005896 chr2L 20010948 20010967 flea 24 5088 10.5 8.0 9.2 2.4 5105 chr2L 20005862 intron CG43861 - chr2L 20008414 intron CG43861 - chr2L 20010967 intron CG43861 - chr2L_24_20005001 chr2L_20005001 RAL-443 771 chr2L 20022080 20022124 chr2L 20022203 20022256 10 130 15.0 15.0 15.0 0.6 176 chr2L 20022080 intergenic not near genes chr2L 20022168 intergenic not near genes chr2L 20022256 intergenic not near genes chr2L_10_20020001 chr2L_20020001 RAL-443 772 chr2L 20041417 20041460 chr2L 20041522 20041565 4 93 11.5 13.0 12.2 0.3 148 chr2L 20041417 intron sNPF + chr2L 20041491 intron sNPF + chr2L 20041565 intron sNPF + chr2L_4_20040001 chr2L_20040001 RAL-443 773 chr2L 20124315 20124361 chr2L 20124413 20124459 15 97 3.0 6.0 4.5 2.7 144 chr2L 20124315 intergenic not near genes chr2L 20124387 intergenic not near genes chr2L 20124459 intergenic not near genes chr2L_15_20120001 chr2L_20120001 RAL-443 774 chr2L 20143127 20143165 chr2L 20143234 20143266 5 105 11.0 6.5 8.8 0.5 139 chr2L 20143127 intergenic not near genes chr2L 20143196 intergenic not near genes chr2L 20143266 intergenic not near genes chr2L_5_20140001 chr2L_20140001 RAL-443 775 chr2L 20227271 20227294 chr2L 20227729 20227752 6 458 11.0 15.0 13.0 0.4 481 chr2L 20227271 intergenic not near genes chr2L 20227512 intergenic not near genes chr2L 20227752 intergenic not near genes chr2L_6_20225001 chr2L_20225001 RAL-443 776 chr2L 20236494 20236532 chr2L 20236590 20236600 14 90 18.5 16.0 17.2 0.8 106 chr2L 20236494 intergenic not near genes chr2L 20236547 intergenic not near genes chr2L 20236600 intergenic not near genes chr2L_14_20235001 chr2L_20235001 RAL-443 777 chr2L 20272098 20272143 chr2L 20282829 20282874 copia 12 10729 4.0 11.5 7.8 1.4 10776 chr2L 20272098 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282874 intergenic not near genes chr2L_12_20275001 chr2L_20275001 RAL-443 778 chr2L 20296499 20296540 chr2L 20296598 20296620 14 94 1.0 5.5 3.2 3.3 121 chr2L 20296499 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_14_20295001 chr2L_20295001 RAL-443 779 chr2L 20302976 20303003 chr2L 20303086 20303110 9 110 8.0 0.0 4.0 1.8 134 chr2L 20302976 intergenic not near genes chr2L 20303043 intergenic not near genes chr2L 20303110 intergenic not near genes chr2L_9_20300001 chr2L_20300001 RAL-443 780 chr2L 20303160 20303164 chr2L 20310643 20310652 blood 4 7486 0.0 7.5 3.8 0.8 7492 chr2L 20303160 intergenic not near genes chr2L 20306906 intergenic not near genes chr2L 20310652 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-443 781 chr2L 20303168 20303189 chr2L 20310630 20310647 blood 12 7477 1.5 4.0 2.8 3.2 7479 chr2L 20303168 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310647 intergenic not near genes chr2L_12_20305001 chr2L_20305001 RAL-443 782 chr2L 20310884 20310918 chr2L 20310958 20311008 9 95 2.0 5.0 3.5 2.0 124 chr2L 20310884 intergenic spir + chr2L 20310946 intergenic spir + chr2L 20311008 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-443 783 chr2L 20312515 20312564 chr2L 20312620 20312669 5 105 3.5 0.0 1.8 1.8 154 chr2L 20312515 intron spir + chr2L 20312592 intron spir + chr2L 20312669 intron spir + chr2L_5_20310001 chr2L_20310001 RAL-443 784 chr2L 20344103 20344135 chr2L 20344186 20344238 5 102 13.5 13.5 13.5 0.3 135 chr2L 20344103 intron spir + chr2L 20344170 intron spir + chr2L 20344238 intron spir + chr2L_5_20340001 chr2L_20340001 RAL-443 785 chr2L 20369417 20369431 chr2L 20369654 20369668 4 237 18.5 13.0 15.8 0.2 251 chr2L 20369417 intergenic not near genes chr2L 20369542 intergenic not near genes chr2L 20369668 intergenic not near genes chr2L_4_20365001 chr2L_20365001 RAL-443 786 chr2L 20372198 20372256 chr2L 20372468 20372481 pogo 13 265 0.5 7.5 4.0 2.6 283 chr2L 20372198 intergenic Ugt37a1 - chr2L 20372340 intergenic Ugt37a1 - chr2L 20372481 exon Ugt37a1 - chr2L_13_20370001 chr2L_20370001 RAL-443 787 chr2L 20383265 20383302 chr2L 20383358 20383358 5 74 17.5 17.5 17.5 0.3 93 chr2L 20383265 intergenic not near genes chr2L 20383312 intergenic not near genes chr2L 20383358 intergenic not near genes chr2L_5_20380001 chr2L_20380001 RAL-443 788 chr2L 20464413 20464414 chr2L 22003994 22003994 4 1539581 12.0 11.0 11.5 0.3 1539581 chr2L 20464413 intergenic CR44980 - chr2L 21234204 intron CG31626 - chr2L 22003994 intergenic not near genes chr2L_4_21230001 chr2L_21230001 RAL-443 789 chr2L 20492751 20492767 chr2L 20493106 20493137 7 367 19.5 17.0 18.2 0.4 386 chr2L 20492751 intergenic not near genes chr2L 20492944 intergenic not near genes chr2L 20493137 intergenic not near genes chr2L_7_20490001 chr2L_20490001 RAL-443 790 chr2L 20498675 20498707 chr2L 20498788 20498812 8 115 4.0 7.0 5.5 1.2 137 chr2L 20498675 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498812 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-443 791 chr2L 20513883 20513931 chr2L 20514519 20514567 10 629 13.5 10.0 11.8 0.8 684 chr2L 20513883 5` UTR CR45702 + chr2L 20514225 5` UTR CR45702 + chr2L 20514567 intergenic CR45702 + chr2L_10_20510001 chr2L_20510001 RAL-443 792 chr2L 20549130 20549151 chr2L 20549218 20549226 6 91 16.5 17.5 17.0 0.3 96 chr2L 20549130 intergenic not near genes chr2L 20549178 intergenic not near genes chr2L 20549226 intergenic not near genes chr2L_6_20545001 chr2L_20545001 RAL-443 793 chr2L 20553187 20553203 chr2L 20553270 20553284 4 89 14.5 10.0 12.2 0.3 97 chr2L 20553187 intergenic not near genes chr2L 20553236 intergenic not near genes chr2L 20553284 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-443 794 chr2L 20568646 20568687 chr2L 20569056 20569097 X-element 14 408 7.0 4.5 5.8 2.1 451 chr2L 20568646 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569097 intron CR45347 + chr2L_14_20565001 chr2L_20565001 RAL-443 795 chr2L 20576215 20576232 chr2L 20583694 20583716 blood 7 7483 16.0 6.5 11.2 0.6 7501 chr2L 20576215 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-443 796 chr2L 20601768 20601779 chr2L 20601866 20601877 5 98 7.0 6.5 6.8 0.6 109 chr2L 20601768 intron CR44909 - chr2L 20601822 intron CR44909 - chr2L 20601877 intron CR44909 - chr2L_5_20600001 chr2L_20600001 RAL-443 797 chr2L 20601783 20601814 chr2L 20601863 20601912 12 94 3.5 6.5 5.0 2.0 129 chr2L 20601783 intron CR44909 - chr2L 20601848 intron CR44909 - chr2L 20601912 intron CR44909 - chr2L_12_20600001 chr2L_20600001 RAL-443 798 chr2L 20602721 20602749 chr2L 20602819 20602857 6 105 3.5 9.0 6.2 0.8 136 chr2L 20602721 intron CR44909 - chr2L 20602789 intron CR44909 - chr2L 20602857 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-443 799 chr2L 20668683 20668715 chr2L 20668764 20668811 13 92 10.0 6.5 8.2 1.4 128 chr2L 20668683 intron CG31678 - chr2L 20668747 intron CG31678 - chr2L 20668811 intron CG31678 - chr2L_13_20665001 chr2L_20665001 RAL-443 800 chr2L 20674813 20674864 chr2L 20674916 20674962 8 99 1.5 0.0 0.8 4.4 149 chr2L 20674813 intron CG31678 - chr2L 20674888 intron CG31678 - chr2L 20674962 intron CG31678 - chr2L_8_20670001 chr2L_20670001 RAL-443 801 chr2L 20687073 20687113 chr2L 20687172 20687212 5 99 11.0 13.0 12.0 0.4 139 chr2L 20687073 intron Hr38 - chr2L 20687142 intron Hr38 - chr2L 20687212 intron Hr38 - chr2L_5_20685001 chr2L_20685001 RAL-443 802 chr2L 20692227 20692257 chr2L 20692335 20692365 6 108 19.5 14.0 16.8 0.3 138 chr2L 20692227 intron Hr38 - chr2L 20692296 intron Hr38 - chr2L 20692365 intron Hr38 - chr2L_6_20690001 chr2L_20690001 RAL-443 803 chr2L 20695812 20695828 chr2L 20695920 20695936 5 108 25.0 23.0 24.0 0.2 124 chr2L 20695812 intron Hr38 - chr2L 20695874 intron Hr38 - chr2L 20695936 intron Hr38 - chr2L_5_20695001 chr2L_20695001 RAL-443 804 chr2L 20819103 20819142 chr2L 20819207 20819246 8 102 9.0 11.5 10.2 0.7 143 chr2L 20819103 intergenic not near genes chr2L 20819174 intergenic not near genes chr2L 20819246 intergenic not near genes chr2L_8_20815001 chr2L_20815001 RAL-443 805 chr2L 20821467 20821497 chr2L 20821647 20821677 5 178 15.0 8.0 11.5 0.4 210 chr2L 20821467 intergenic not near genes chr2L 20821572 intergenic not near genes chr2L 20821677 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-443 806 chr2L 20829563 20829602 chr2L 20829667 20829706 4 101 10.0 6.5 8.2 0.4 143 chr2L 20829563 intergenic CG31673 + chr2L 20829634 5` UTR CG31673 + chr2L 20829706 exon CG31673 + chr2L_4_20825001 chr2L_20825001 RAL-443 807 chr2L 20835788 20835834 chr2L 20836525 20836566 Quasimodo 11 734 6.0 3.0 4.5 2.0 778 chr2L 20835788 5` UTR Oseg5 - chr2L 20836177 intergenic Oseg5 -,Spn38F - chr2L 20836566 intergenic Spn38F - chr2L_11_20835001 chr2L_20835001 RAL-443 808 chr2L 20840006 20840049 chr2L 20840238 20840281 9 230 11.5 6.0 8.8 0.9 275 chr2L 20840006 intergenic not near genes chr2L 20840144 intergenic not near genes chr2L 20840281 intergenic CG31676 + chr2L_9_20840001 chr2L_20840001 RAL-443 809 chr2L 20846743 20846792 chr2L 20846846 20846886 18 101 2.5 4.5 3.5 4.0 143 chr2L 20846743 intron CG31676 + chr2L 20846814 intron CG31676 + chr2L 20846886 intron CG31676 + chr2L_18_20845001 chr2L_20845001 RAL-443 810 chr2L 20862583 20862591 chr2L 20862700 20862708 6 117 15.5 18.0 16.8 0.3 125 chr2L 20862583 intergenic not near genes chr2L 20862646 intergenic not near genes chr2L 20862708 intergenic not near genes chr2L_6_20860001 chr2L_20860001 RAL-443 811 chr2L 20891537 20891543 chr2L 20896642 20896664 jockey 7 5113 4.5 6.5 5.5 1.1 5127 chr2L 20891537 intron,intron CG43739 -,sky - chr2L 20894100 intron,intron CG43739 -,sky - chr2L 20896664 intron,intron CG43739 -,sky - chr2L_7_20890001 chr2L_20890001 RAL-443 812 chr2L 20901471 20901475 chr2L 20902642 20902658 1360 4 1178 3.0 2.0 2.5 1.1 1187 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902064 intron,intron CG43739 -,sky - chr2L 20902658 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-443 813 chr2L 20911021 20911059 chr2L 20911108 20911155 5 94 15.5 11.5 13.5 0.3 134 chr2L 20911021 intron,intron CG43739 -,sky - chr2L 20911088 intron,intron CG43739 -,sky - chr2L 20911155 intron,intron CG43739 -,sky - chr2L_5_20910001 chr2L_20910001 RAL-443 814 chr2L 20936988 20937024 chr2L 20937122 20937159 4 134 15.0 13.5 14.2 0.3 171 chr2L 20936988 intergenic not near genes chr2L 20937074 intergenic not near genes chr2L 20937159 intergenic not near genes chr2L_4_20935001 chr2L_20935001 RAL-443 815 chr2L 20946936 20946954 chr2L 20947033 20947059 7 103 11.0 9.5 10.2 0.6 123 chr2L 20946936 intergenic CR44606 - chr2L 20946998 intergenic CR44606 - chr2L 20947059 intergenic CR44606 - chr2L_7_20945001 chr2L_20945001 RAL-443 816 chr2L 20967071 20967081 chr2L 20967177 20967187 6 104 7.0 5.0 6.0 0.9 116 chr2L 20967071 3` UTR CG42238 - chr2L 20967129 3` UTR CG42238 - chr2L 20967187 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-443 817 chr2L 20967092 20967105 chr2L 20967176 20967211 7 100 6.0 5.0 5.5 1.1 119 chr2L 20967092 3` UTR CG42238 - chr2L 20967152 3` UTR CG42238 - chr2L 20967211 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-443 818 chr2L 20976633 20976674 chr2L 20981468 20981495 X-element 11 4830 4.5 7.0 5.8 1.6 4862 chr2L 20976633 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981495 intron CG42238 - chr2L_11_20975001 chr2L_20975001 RAL-443 819 chr2L 20991019 20991067 chr2L 20991117 20991165 12 93 5.5 3.5 4.5 2.2 146 chr2L 20991019 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991165 intron CG42238 - chr2L_12_20990001 chr2L_20990001 RAL-443 820 chr2L 21002982 21003013 chr2L 21003737 21003790 19 773 10.5 13.0 11.8 1.5 808 chr2L 21002982 intron CG42238 - chr2L 21003386 intron CG42238 - chr2L 21003790 intron CG42238 - chr2L_19_21000001 chr2L_21000001 RAL-443 821 chr2L 21020277 21020307 chr2L 21023948 21023998 NOF 13 3686 6.5 5.0 5.8 1.9 3721 chr2L 21020277 intron CG42238 - chr2L 21022138 intron CG42238 - chr2L 21023998 intron CG42238 - chr2L_13_21020001 chr2L_21020001 RAL-443 822 chr2L 21035399 21035414 chr2L 21035528 21035538 5 128 15.0 13.0 14.0 0.3 139 chr2L 21035399 intron CG42238 - chr2L 21035468 intron CG42238 - chr2L 21035538 intron CG42238 - chr2L_5_21035001 chr2L_21035001 RAL-443 823 chr2L 21041135 21041158 chr2L 21049415 21049426 Tirant 5 8276 6.5 9.0 7.8 0.6 8291 chr2L 21041135 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-443 824 chr2L 21074905 21074951 chr2L 21075011 21075061 23 109 3.5 3.0 3.2 5.5 156 chr2L 21074905 intergenic tadr + chr2L 21074983 intergenic tadr + chr2L 21075061 intergenic tadr + chr2L_23_21070001 chr2L_21070001 RAL-443 825 chr2L 21086426 21086456 chr2L 21086539 21086590 9 126 7.0 5.5 6.2 1.2 164 chr2L 21086426 5` UTR CG33509 - chr2L 21086508 intergenic CG33509 -,ppk13 - chr2L 21086590 intergenic CG33509 -,ppk13 - chr2L_9_21085001 chr2L_21085001 RAL-443 826 chr2L 21088905 21088947 chr2L 21089002 21089050 17 99 7.0 6.5 6.8 2.2 145 chr2L 21088905 intergenic ppk13 -,CG9259 + chr2L 21088978 intergenic ppk13 -,CG9259 + chr2L 21089050 intergenic ppk13 -,CG9259 + chr2L_17_21085001 chr2L_21085001 RAL-443 827 chr2L 21154150 21154186 chr2L 21154240 21154272 4 91 22.5 20.0 21.2 0.2 122 chr2L 21154150 intergenic E2f2 - chr2L 21154211 intergenic E2f2 - chr2L 21154272 intergenic E2f2 - chr2L_4_21150001 chr2L_21150001 RAL-443 828 chr2L 21158873 21158904 chr2L 21158962 21159001 6 91 10.5 10.0 10.2 0.5 128 chr2L 21158873 intergenic CG9248 +,CG9249 - chr2L 21158937 5` UTR CG9248 + chr2L 21159001 5` UTR CG9248 + chr2L_6_21155001 chr2L_21155001 RAL-443 829 chr2L 21245263 21245306 chr2L 21245523 21245543 5 250 8.0 7.0 7.5 0.6 280 chr2L 21245263 intron Hr39 + chr2L 21245403 intron Hr39 + chr2L 21245543 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-443 830 chr2L 21286584 21286619 chr2L 21286682 21286717 7 98 14.5 14.0 14.2 0.5 133 chr2L 21286584 exon Mio - chr2L 21286650 intron Mio - chr2L 21286717 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-443 831 chr2L 21323413 21323429 chr2L 21323515 21323515 5 101 5.0 4.0 4.5 0.9 102 chr2L 21323413 intergenic not near genes chr2L 21323464 intergenic not near genes chr2L 21323515 intergenic not near genes chr2L_5_21320001 chr2L_21320001 RAL-443 832 chr2L 21347535 21347577 chr2L 21355026 21355069 blood 15 7491 13.0 7.5 10.2 1.3 7534 chr2L 21347535 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355069 intron Tsp39D + chr2L_15_21350001 chr2L_21350001 RAL-443 833 chr2L 21355586 21355634 chr2L 21355751 21355774 13 157 4.5 5.0 4.8 2.2 188 chr2L 21355586 exon Tsp39D + chr2L 21355680 intron Tsp39D + chr2L 21355774 intron Tsp39D + chr2L_13_21355001 chr2L_21355001 RAL-443 834 chr2L 21597030 21597060 chr2L 21604784 21604824 roo 12 7758 5.5 5.5 5.5 1.8 7794 chr2L 21597030 intergenic not near genes chr2L 21600927 intergenic not near genes chr2L 21604824 intergenic not near genes chr2L_12_21600001 chr2L_21600001 RAL-443 835 chr2L 21612173 21612217 chr2L 21612432 21612476 11 257 18.5 17.0 17.8 0.6 303 chr2L 21612173 intergenic not near genes chr2L 21612324 intergenic not near genes chr2L 21612476 intergenic not near genes chr2L_11_21610001 chr2L_21610001 RAL-443 836 chr2L 21691807 21691860 chr2L 21698297 21698325 Burdock 15 6487 5.5 2.5 4.0 3.0 6518 chr2L 21691807 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698325 intron CG31619 + chr2L_15_21695001 chr2L_21695001 RAL-443 837 chr2L 21750083 21750132 chr2L 21750422 21750470 4 340 15.0 13.0 14.0 0.3 387 chr2L 21750083 intron step - chr2L 21750276 intron step - chr2L 21750470 intron step - chr2L_4_21750001 chr2L_21750001 RAL-443 838 chr2L 21754641 21754687 chr2L 21754742 21754788 23 100 8.0 7.0 7.5 2.7 147 chr2L 21754641 intron step - chr2L 21754714 intron step - chr2L 21754788 intron step - chr2L_23_21750001 chr2L_21750001 RAL-443 839 chr2L 21771973 21772011 chr2L 21772068 21772110 11 96 15.0 15.5 15.2 0.7 137 chr2L 21771973 intron CG31612 - chr2L 21772042 intron CG31612 - chr2L 21772110 intron CG31612 - chr2L_11_21770001 chr2L_21770001 RAL-443 840 chr2L 21783458 21783485 chr2L 21783833 21783839 7 374 14.0 15.5 14.8 0.4 381 chr2L 21783458 intron,exon CG31612 -,CG11630 - chr2L 21783648 intron,exon CG31612 -,CG11630 - chr2L 21783839 intron,exon CG31612 -,CG11630 - chr2L_7_21780001 chr2L_21780001 RAL-443 841 chr2L 21798048 21798065 chr2L 21877519 21877536 6 79471 24.5 19.0 21.8 0.3 79488 chr2L 21798048 3` UTR CR44269 - chr2L 21837792 intergenic not near genes chr2L 21877536 intergenic not near genes chr2L_6_21835001 chr2L_21835001 RAL-443 842 chr2L 21824102 21824151 chr2L 21824209 21824252 11 106 6.5 12.0 9.2 1.1 150 chr2L 21824102 intergenic not near genes chr2L 21824177 intergenic not near genes chr2L 21824252 intergenic not near genes chr2L_11_21820001 chr2L_21820001 RAL-443 843 chr2L 21953793 21953844 chr2L 21954679 21954725 11 882 27.5 38.5 33.0 0.3 932 chr2L 21953793 intergenic not near genes chr2L 21954259 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_11_21950001 chr2L_21950001 RAL-443 844 chr2L 21981668 21981712 chr2L 21990853 21990885 roo 11 9179 4.0 10.5 7.2 1.3 9217 chr2L 21981668 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990885 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-443 845 chr2L 21996928 21996968 chr2L 21997029 21997069 8 98 14.5 19.0 16.8 0.4 141 chr2L 21996928 intergenic not near genes chr2L 21996998 intergenic not near genes chr2L 21997069 intergenic not near genes chr2L_8_21995001 chr2L_21995001 RAL-443 846 chr2L 22001628 22001673 chr2L 22001724 22001759 12 87 16.0 12.0 14.0 0.8 131 chr2L 22001628 intergenic not near genes chr2L 22001694 intergenic not near genes chr2L 22001759 intergenic not near genes chr2L_12_22000001 chr2L_22000001 RAL-443 847 chr2L 22025808 22025853 chr2L 22025907 22025930 10 93 12.5 11.0 11.8 0.8 122 chr2L 22025808 intergenic tio + chr2L 22025869 intergenic tio + chr2L 22025930 intergenic tio + chr2L_10_22025001 chr2L_22025001 RAL-443 848 chr2L 22164969 22164995 chr2L 22165093 22165144 7 137 14.5 16.5 15.5 0.4 175 chr2L 22164969 3` UTR CG42748 + chr2L 22165056 3` UTR CG42748 + chr2L 22165144 3` UTR CG42748 + chr2L_7_22165001 chr2L_22165001 RAL-443 849 chr2L 22165497 22165519 chr2L 22165602 22165623 8 104 20.0 13.0 16.5 0.5 126 chr2L 22165497 3` UTR CG42748 + chr2L 22165560 3` UTR CG42748 + chr2L 22165623 3` UTR CG42748 + chr2L_8_22165001 chr2L_22165001 RAL-443 850 chr2L 22212121 22212163 chr2L 22212683 22212729 9 564 3.5 6.5 5.0 1.5 608 chr2L 22212121 intron Ir40a - chr2L 22212425 intron Ir40a - chr2L 22212729 exon Ir40a - chr2L_9_22210001 chr2L_22210001 RAL-443 851 chr2L 22215889 22215930 chr2L 22215995 22216036 9 104 5.0 11.0 8.0 1.0 147 chr2L 22215889 intergenic not near genes chr2L 22215962 intergenic not near genes chr2L 22216036 intergenic not near genes chr2L_9_22215001 chr2L_22215001 RAL-443 852 chr2L 22239420 22239447 chr2L 22239507 22239548 4 95 8.5 11.5 10.0 0.4 128 chr2L 22239420 intron CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239548 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-443 853 chr2L 22258591 22258645 chr2L 22260736 22260789 G6 17 2141 5.0 3.5 4.2 3.3 2198 chr2L 22258591 intergenic Tif-IA + chr2L 22259690 intergenic not near genes chr2L 22260789 intergenic not near genes chr2L_17_22255001 chr2L_22255001 RAL-443 854 chr2L 22294344 22294383 chr2L 22294452 22294491 7 104 7.5 7.0 7.2 0.9 147 chr2L 22294344 intergenic not near genes chr2L 22294418 intergenic not near genes chr2L 22294491 intergenic not near genes chr2L_7_22290001 chr2L_22290001 RAL-443 855 chr2L 22294672 22294689 chr2L 22294769 22294786 4 94 9.0 10.5 9.8 0.4 114 chr2L 22294672 intergenic not near genes chr2L 22294729 intergenic not near genes chr2L 22294786 intergenic not near genes chr2L_4_22290001 chr2L_22290001 RAL-443 856 chr2L 22548926 22548936 chr2L 22550161 22550176 1360 6 1242 0.5 14.5 7.5 0.7 1250 chr2L 22548926 intergenic CG17490 + chr2L 22549551 intergenic not near genes chr2L 22550176 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-443 857 chr2L 22581950 22581992 chr2L 22583759 22583801 S-element 16 1806 5.5 6.0 5.8 2.4 1851 chr2L 22581950 intron CG17494 + chr2L 22582876 intron CG17494 + chr2L 22583801 intron CG17494 + chr2L_16_22580001 chr2L_22580001 RAL-443 858 chr2L 22706802 22706838 chr2L 22706925 22706961 11 121 9.0 12.5 10.8 0.9 159 chr2L 22706802 intron CG40006 - chr2L 22706882 intron CG40006 - chr2L 22706961 intron CG40006 - chr2L_11_22705001 chr2L_22705001 RAL-443 859 chr2L 22776400 22776452 chr2L 22778209 22778246 S-element 21 1808 8.5 3.5 6.0 3.0 1846 chr2L 22776400 intergenic not near genes chr2L 22777323 intergenic not near genes chr2L 22778246 intergenic not near genes chr2L_21_22775001 chr2L_22775001 RAL-443 860 chr2L 22927812 22927840 chr2L 22928034 22928062 8 222 37.5 32.5 35.0 0.2 250 chr2L 22927812 intron lt + chr2L 22927937 intron lt + chr2L 22928062 intron lt + chr2L_8_22925001 chr2L_22925001 RAL-443 861 chr2R 1082369 1082383 chr2R 1087129 1087138 Doc 4 4761 4.0 5.0 4.5 0.7 4769 chr2R 1082369 intron rl + chr2R 1084754 intron rl + chr2R 1087138 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-443 862 chr2R 1320198 1320201 chr2R 11463556 11463558 invader1 6 10143356 26.0 30.5 28.2 0.2 10143360 chr2R 1320198 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463558 3` UTR E(Pc) + chr2R_6_6390001 chr2R_6390001 RAL-443 863 chr2R 1320204 1320204 chr2R 21358403 21358403 8 20038199 26.5 13.5 20.0 0.4 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_8_11335001 chr2R_11335001 RAL-443 864 chr2R 1365848 1365893 chr2R 1365978 1366025 5 126 15.0 16.5 15.8 0.3 177 chr2R 1365848 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366025 intron l(2)41Ab + chr2R_5_1365001 chr2R_1365001 RAL-443 865 chr2R 1516588 1516603 chr2R 1521336 1521351 1731 8 4747 30.5 21.5 26.0 0.3 4763 chr2R 1516588 exon Maf1 - chr2R 1518970 intron Maf1 - chr2R 1521351 5` UTR Maf1 - chr2R_8_1515001 chr2R_1515001 RAL-443 866 chr2R 1755955 1755968 chr2R 1756089 1756102 4 134 8.0 7.5 7.8 0.5 147 chr2R 1755955 intron CG41520 + chr2R 1756028 intron CG41520 + chr2R 1756102 intron CG41520 + chr2R_4_1755001 chr2R_1755001 RAL-443 867 chr2R 2015132 2015165 chr2R 2015214 2015262 6 86 12.5 11.0 11.8 0.5 130 chr2R 2015132 intron CG17684 - chr2R 2015197 intron CG17684 - chr2R 2015262 intron CG17684 - chr2R_6_2015001 chr2R_2015001 RAL-443 868 chr2R 2498966 2499016 chr2R 2508133 2508183 roo 15 9167 6.0 9.0 7.5 1.8 9217 chr2R 2498966 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508183 intron MFS17 - chr2R_15_2500001 chr2R_2500001 RAL-443 869 chr2R 2508294 2508338 chr2R 2508452 2508487 8 156 9.0 10.0 9.5 0.8 193 chr2R 2508294 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508487 intron MFS17 - chr2R_8_2505001 chr2R_2505001 RAL-443 870 chr2R 2591520 2591550 chr2R 2594216 2594222 roo 4 2679 35.0 17.0 26.0 0.1 2702 chr2R 2591520 intergenic not near genes chr2R 2592871 intergenic not near genes chr2R 2594222 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-443 871 chr2R 3291925 3291928 chr2R 3915114 3915117 4 623189 12.0 20.0 16.0 0.2 623192 chr2R 3291925 intergenic not near genes chr2R 3603521 intergenic not near genes chr2R 3915117 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-443 872 chr2R 3532599 3532631 chr2R 3536062 3536094 Doc 7 3463 3.0 4.5 3.8 1.5 3495 chr2R 3532599 intergenic not near genes chr2R 3534346 intergenic not near genes chr2R 3536094 intergenic not near genes chr2R_7_3530001 chr2R_3530001 RAL-443 873 chr2R 3582949 3582958 chr2R 3583266 3583279 4 320 12.0 8.5 10.2 0.4 330 chr2R 3582949 intergenic not near genes chr2R 3583114 intergenic not near genes chr2R 3583279 intergenic not near genes chr2R_4_3580001 chr2R_3580001 RAL-443 874 chr2R 4603322 4603373 chr2R 4603425 4603461 6 91 3.0 6.5 4.8 1.0 139 chr2R 4603322 intron p120ctn + chr2R 4603392 intron p120ctn + chr2R 4603461 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-443 875 chr2R 4622964 4622983 chr2R 4624118 4624156 1360 10 1163 8.5 18.0 13.2 0.7 1192 chr2R 4622964 intergenic CR44101 - chr2R 4623560 intergenic not near genes chr2R 4624156 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-443 876 chr2R 4688104 4688132 chr2R 4688212 4688242 7 112 7.5 14.0 10.8 0.6 138 chr2R 4688104 intergenic not near genes chr2R 4688173 intergenic not near genes chr2R 4688242 intergenic not near genes chr2R_7_4685001 chr2R_4685001 RAL-443 877 chr2R 4821199 4821247 chr2R 4821305 4821353 19 103 6.0 4.5 5.2 3.1 154 chr2R 4821199 intron CG17528 - chr2R 4821276 intron CG17528 - chr2R 4821353 intron CG17528 - chr2R_19_4820001 chr2R_4820001 RAL-443 878 chr2R 4825123 4825123 chr2R 22311213 22311218 4 17486093 18.5 18.5 18.5 0.2 17486095 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311218 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-443 879 chr2R 4838852 4838905 chr2R 4840395 4840438 transib2 6 1539 12.5 13.0 12.8 0.4 1586 chr2R 4838852 intergenic not near genes chr2R 4839645 intergenic not near genes chr2R 4840438 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-443 880 chr2R 4870741 4870743 chr2R 4871271 4871274 R1A1-element 5 531 10.5 12.0 11.2 0.4 533 chr2R 4870741 intergenic not near genes chr2R 4871008 intergenic not near genes chr2R 4871274 intergenic not near genes chr2R_5_4870001 chr2R_4870001 RAL-443 881 chr2R 4933371 4933385 chr2R 4933936 4933969 4 576 6.5 10.5 8.5 0.4 598 chr2R 4933371 intron Ir41a + chr2R 4933670 intron Ir41a + chr2R 4933969 intron Ir41a + chr2R_4_4930001 chr2R_4930001 RAL-443 882 chr2R 5008983 5009021 chr2R 5009312 5009348 5 324 4.0 2.0 3.0 1.2 365 chr2R 5008983 intron Ir41a + chr2R 5009166 intron Ir41a + chr2R 5009348 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-443 883 chr2R 5075955 5075982 chr2R 5076097 5076124 4 146 21.0 31.0 26.0 0.1 169 chr2R 5075955 intergenic not near genes chr2R 5076040 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-443 884 chr2R 5080808 5080814 chr2R 5080883 5080915 5 96 26.0 20.0 23.0 0.2 107 chr2R 5080808 intergenic not near genes chr2R 5080862 intergenic not near genes chr2R 5080915 intergenic not near genes chr2R_5_5080001 chr2R_5080001 RAL-443 885 chr2R 5123219 5123245 chr2R 5123305 5123314 6 91 12.0 14.0 13.0 0.4 95 chr2R 5123219 intron gus - chr2R 5123266 intron gus - chr2R 5123314 intron gus - chr2R_6_5120001 chr2R_5120001 RAL-443 886 chr2R 5125236 5125271 chr2R 5125573 5125609 8 333 6.0 4.0 5.0 1.3 373 chr2R 5125236 intron gus - chr2R 5125422 intron gus - chr2R 5125609 intron gus - chr2R_8_5125001 chr2R_5125001 RAL-443 887 chr2R 5237336 5237357 chr2R 5237438 5237454 4 100 23.0 24.5 23.8 0.2 118 chr2R 5237336 intron Nipped-A - chr2R 5237395 intron Nipped-A - chr2R 5237454 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-443 888 chr2R 5303472 5303515 chr2R 5303580 5303613 5 100 21.5 29.0 25.2 0.2 141 chr2R 5303472 intergenic not near genes chr2R 5303542 intergenic not near genes chr2R 5303613 intergenic not near genes chr2R_5_5300001 chr2R_5300001 RAL-443 889 chr2R 5363480 5363519 chr2R 5363567 5363617 12 85 8.0 7.5 7.8 1.4 137 chr2R 5363480 5` UTR CR42646 + chr2R 5363548 intron CR42646 + chr2R 5363617 intron CR42646 + chr2R_12_5360001 chr2R_5360001 RAL-443 890 chr2R 5417976 5417984 chr2R 5420628 5420636 Burdock 7 2652 11.0 5.0 8.0 0.8 2660 chr2R 5417976 intron laccase2 + chr2R 5419306 intron laccase2 + chr2R 5420636 intron laccase2 + chr2R_7_5415001 chr2R_5415001 RAL-443 891 chr2R 5417987 5418027 chr2R 5420627 5420679 Burdock 25 2647 3.0 5.0 4.0 5.0 2692 chr2R 5417987 intron laccase2 + chr2R 5419333 intron laccase2 + chr2R 5420679 intron laccase2 + chr2R_25_5415001 chr2R_5415001 RAL-443 892 chr2R 5473352 5473400 chr2R 5473462 5473515 13 113 6.0 5.0 5.5 2.0 163 chr2R 5473352 intron CG30440 - chr2R 5473434 intron CG30440 - chr2R 5473515 intron CG30440 - chr2R_13_5470001 chr2R_5470001 RAL-443 893 chr2R 5475446 5475473 chr2R 5475719 5475756 10 279 9.5 13.5 11.5 0.8 310 chr2R 5475446 intron CG30440 - chr2R 5475601 intron CG30440 - chr2R 5475756 intron CG30440 - chr2R_10_5475001 chr2R_5475001 RAL-443 894 chr2R 5476340 5476384 chr2R 5476902 5476930 6 560 9.5 12.0 10.8 0.5 590 chr2R 5476340 intron CG30440 - chr2R 5476635 intron CG30440 - chr2R 5476930 intron CG30440 - chr2R_6_5475001 chr2R_5475001 RAL-443 895 chr2R 5491697 5491713 chr2R 5491858 5491864 4 158 17.5 17.5 17.5 0.2 167 chr2R 5491697 intron CG30440 - chr2R 5491780 intron CG30440 - chr2R 5491864 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-443 896 chr2R 5509505 5509547 chr2R 5509621 5509663 11 116 10.5 10.0 10.2 1.0 158 chr2R 5509505 intron CG30438 + chr2R 5509584 intron CG30438 + chr2R 5509663 intron CG30438 + chr2R_11_5505001 chr2R_5505001 RAL-443 897 chr2R 5529270 5529295 chr2R 5529398 5529423 INE-1 7 126 7.5 9.5 8.5 0.7 153 chr2R 5529270 intron CG30438 + chr2R 5529346 intron CG30438 + chr2R 5529423 intron CG30438 + chr2R_7_5525001 chr2R_5525001 RAL-443 898 chr2R 5712303 5712337 chr2R 5712400 5712434 8 94 20.0 22.0 21.0 0.4 131 chr2R 5712303 intron ap - chr2R 5712368 intron ap - chr2R 5712434 intron ap - chr2R_8_5710001 chr2R_5710001 RAL-443 899 chr2R 5750429 5750453 chr2R 5750541 5750565 10 112 18.0 7.0 12.5 0.7 136 chr2R 5750429 intergenic not near genes chr2R 5750497 intergenic not near genes chr2R 5750565 intergenic not near genes chr2R_10_5750001 chr2R_5750001 RAL-443 900 chr2R 5772826 5772858 chr2R 5772928 5772960 4 102 16.5 21.0 18.8 0.2 134 chr2R 5772826 3` UTR Gp210 + chr2R 5772893 3` UTR Gp210 + chr2R 5772960 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-443 901 chr2R 5790444 5790492 chr2R 5790549 5790597 23 104 7.0 5.0 6.0 3.3 153 chr2R 5790444 intergenic not near genes chr2R 5790520 intergenic not near genes chr2R 5790597 intergenic not near genes chr2R_23_5790001 chr2R_5790001 RAL-443 902 chr2R 5859960 5859984 chr2R 5860092 5860116 4 132 15.0 9.0 12.0 0.3 156 chr2R 5859960 3` UTR dpr12 + chr2R 5860038 3` UTR dpr12 + chr2R 5860116 3` UTR dpr12 + chr2R_4_5860001 chr2R_5860001 RAL-443 903 chr2R 5869256 5869309 chr2R 5874352 5874370 flea 12 5093 5.0 8.0 6.5 1.6 5114 chr2R 5869256 intergenic not near genes chr2R 5871813 intergenic not near genes chr2R 5874370 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-443 904 chr2R 5876853 5876898 chr2R 5876975 5876975 5 112 13.5 10.0 11.8 0.4 122 chr2R 5876853 intergenic not near genes chr2R 5876914 intergenic not near genes chr2R 5876975 intergenic not near genes chr2R_5_5875001 chr2R_5875001 RAL-443 905 chr2R 5878906 5878958 chr2R 5879006 5879017 17 94 4.0 7.5 5.8 2.5 111 chr2R 5878906 intergenic CG44438 - chr2R 5878962 intergenic CG44438 - chr2R 5879017 intergenic CG44438 - chr2R_17_5875001 chr2R_5875001 RAL-443 906 chr2R 5879343 5879370 chr2R 5879544 5879581 8 205 13.5 8.5 11.0 0.7 238 chr2R 5879343 3` UTR CG44438 - chr2R 5879462 3` UTR CG44438 - chr2R 5879581 exon CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-443 907 chr2R 5885345 5885366 chr2R 5885494 5885505 8 147 6.0 3.0 4.5 1.5 160 chr2R 5885345 5` UTR CR44125 + chr2R 5885425 5` UTR CR44125 + chr2R 5885505 5` UTR CR44125 + chr2R_8_5885001 chr2R_5885001 RAL-443 908 chr2R 5902137 5902176 chr2R 5909716 5909744 17.6 13 7575 8.5 3.5 6.0 1.9 7607 chr2R 5902137 intron CG43366 + chr2R 5905940 intron CG43366 + chr2R 5909744 intron CG43366 + chr2R_13_5905001 chr2R_5905001 RAL-443 909 chr2R 5985817 5985865 chr2R 5985920 5985959 5 97 9.5 9.5 9.5 0.5 142 chr2R 5985817 intron Src42A + chr2R 5985888 intron Src42A + chr2R 5985959 intron Src42A + chr2R_5_5985001 chr2R_5985001 RAL-443 910 chr2R 6088369 6088389 chr2R 6088469 6088477 6 103 19.0 23.5 21.2 0.3 108 chr2R 6088369 intergenic not near genes chr2R 6088423 intergenic not near genes chr2R 6088477 intergenic not near genes chr2R_6_6085001 chr2R_6085001 RAL-443 911 chr2R 6118376 6118398 chr2R 6118484 6118525 4 121 14.0 19.0 16.5 0.2 149 chr2R 6118376 intron EcR - chr2R 6118450 intron EcR - chr2R 6118525 intron EcR - chr2R_4_6115001 chr2R_6115001 RAL-443 912 chr2R 6129307 6129358 chr2R 6129405 6129456 16 95 14.5 12.0 13.2 1.1 149 chr2R 6129307 intron EcR - chr2R 6129382 intron EcR - chr2R 6129456 intron EcR - chr2R_16_6125001 chr2R_6125001 RAL-443 913 chr2R 6175573 6175626 chr2R 6175681 6175734 17 107 14.5 14.0 14.2 1.1 161 chr2R 6175573 3` UTR Cyp6w1 + chr2R 6175654 3` UTR Cyp6w1 + chr2R 6175734 3` UTR Cyp6w1 + chr2R_17_6175001 chr2R_6175001 RAL-443 914 chr2R 6178101 6178137 chr2R 6178247 6178283 16 145 5.0 5.0 5.0 2.7 182 chr2R 6178101 intergenic not near genes chr2R 6178192 intergenic not near genes chr2R 6178283 intergenic not near genes chr2R_16_6175001 chr2R_6175001 RAL-443 915 chr2R 6178658 6178713 chr2R 6178765 6178820 12 101 9.5 11.5 10.5 1.0 162 chr2R 6178658 intergenic not near genes chr2R 6178739 intergenic not near genes chr2R 6178820 intergenic not near genes chr2R_12_6175001 chr2R_6175001 RAL-443 916 chr2R 6194666 6194696 chr2R 6194769 6194789 7 96 9.0 6.0 7.5 0.8 123 chr2R 6194666 intron Ptr - chr2R 6194728 intron Ptr - chr2R 6194789 intron Ptr - chr2R_7_6190001 chr2R_6190001 RAL-443 917 chr2R 6494533 6494551 chr2R 6499288 6499313 F-element 6 4770 2.0 3.5 2.8 1.6 4780 chr2R 6494533 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499313 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-443 918 chr2R 6500946 6500993 chr2R 6501054 6501095 9 109 14.5 13.0 13.8 0.6 149 chr2R 6500946 intergenic not near genes chr2R 6501020 intergenic not near genes chr2R 6501095 intergenic not near genes chr2R_9_6500001 chr2R_6500001 RAL-443 919 chr2R 6530752 6530785 chr2R 6530852 6530885 5 100 21.5 14.0 17.8 0.3 133 chr2R 6530752 intron jing + chr2R 6530818 intron jing + chr2R 6530885 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-443 920 chr2R 6559089 6559129 chr2R 6559192 6559231 4 102 13.0 11.5 12.2 0.3 142 chr2R 6559089 intron jing + chr2R 6559160 intron jing + chr2R 6559231 intron jing + chr2R_4_6555001 chr2R_6555001 RAL-443 921 chr2R 6579758 6579803 chr2R 6584864 6584909 flea 19 5105 8.0 3.0 5.5 2.9 5151 chr2R 6579758 intron jing + chr2R 6582334 intron jing + chr2R 6584909 intron jing + chr2R_19_6580001 chr2R_6580001 RAL-443 922 chr2R 6633182 6633232 chr2R 6633279 6633305 9 94 9.0 9.5 9.2 0.9 123 chr2R 6633182 intergenic Vha16-1 -,Trap1 - chr2R 6633244 intergenic Vha16-1 -,Trap1 - chr2R 6633305 intergenic Vha16-1 -,Trap1 - chr2R_9_6630001 chr2R_6630001 RAL-443 923 chr2R 6685869 6685886 chr2R 6685971 6685983 6 99 16.5 15.0 15.8 0.4 114 chr2R 6685869 intron,intron CG9422 +,Tdc2 - chr2R 6685926 intron,intron CG9422 +,Tdc2 - chr2R 6685983 intron,intron CG9422 +,Tdc2 - chr2R_6_6685001 chr2R_6685001 RAL-443 924 chr2R 6697628 6697668 chr2R 6697731 6697783 5 111 7.0 5.5 6.2 0.7 155 chr2R 6697628 intron Rab2 + chr2R 6697706 intron Rab2 + chr2R 6697783 intron Rab2 + chr2R_5_6695001 chr2R_6695001 RAL-443 925 chr2R 6699571 6699614 chr2R 6699676 6699710 12 104 17.5 21.5 19.5 0.6 139 chr2R 6699571 intergenic Rab2 + chr2R 6699640 intergenic Rab2 + chr2R 6699710 intergenic Rab2 + chr2R_12_6695001 chr2R_6695001 RAL-443 926 chr2R 6710721 6710735 chr2R 6710904 6710948 4 206 6.0 18.0 12.0 0.3 227 chr2R 6710721 intron,intron CG3409 -,CG45092 - chr2R 6710834 intron,intron CG3409 -,CG45092 - chr2R 6710948 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-443 927 chr2R 6712568 6712592 chr2R 6712685 6712709 10 117 7.5 8.5 8.0 1.1 141 chr2R 6712568 intron,intron CG3409 -,CG45092 - chr2R 6712638 intron,intron CG3409 -,CG45092 - chr2R 6712709 intron,intron CG3409 -,CG45092 - chr2R_10_6710001 chr2R_6710001 RAL-443 928 chr2R 6778828 6778858 chr2R 6778934 6778945 4 101 22.0 18.5 20.2 0.2 117 chr2R 6778828 intron Epac - chr2R 6778886 intron Epac - chr2R 6778945 intron Epac - chr2R_4_6775001 chr2R_6775001 RAL-443 929 chr2R 6825437 6825467 chr2R 6825550 6825580 6 109 12.5 14.0 13.2 0.4 143 chr2R 6825437 intergenic not near genes chr2R 6825508 intergenic not near genes chr2R 6825580 intergenic not near genes chr2R_6_6825001 chr2R_6825001 RAL-443 930 chr2R 6895398 6895431 chr2R 6895497 6895521 4 90 5.5 8.0 6.8 0.5 123 chr2R 6895398 intron CG30158 + chr2R 6895460 intron CG30158 + chr2R 6895521 intron CG30158 + chr2R_4_6895001 chr2R_6895001 RAL-443 931 chr2R 6952148 6952183 chr2R 6959748 6959783 opus 13 7599 2.0 7.5 4.8 2.2 7635 chr2R 6952148 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955966 intron,intron mim -,CheB42c - chr2R 6959783 intron,intron mim -,CheB42c - chr2R_13_6955001 chr2R_6955001 RAL-443 932 chr2R 6964262 6964316 chr2R 6964359 6964413 17 96 21.5 22.0 21.8 0.7 151 chr2R 6964262 intron,intron mim -,CheB42c - chr2R 6964338 intron,intron mim -,CheB42c - chr2R 6964413 intron,intron mim -,CheB42c - chr2R_17_6960001 chr2R_6960001 RAL-443 933 chr2R 6965258 6965294 chr2R 6965349 6965400 6 96 12.5 11.0 11.8 0.5 142 chr2R 6965258 intron,intron mim -,CheB42c - chr2R 6965329 intron,intron mim -,CheB42c - chr2R 6965400 intron,intron mim -,CheB42c - chr2R_6_6965001 chr2R_6965001 RAL-443 934 chr2R 7009284 7009317 chr2R 7009638 7009671 9 352 17.5 23.5 20.5 0.4 387 chr2R 7009284 intergenic Tsp42Ed - chr2R 7009478 intergenic Tsp42Ed - chr2R 7009671 3` UTR Tsp42Ed - chr2R_9_7005001 chr2R_7005001 RAL-443 935 chr2R 7052027 7052068 chr2R 7052118 7052143 9 91 3.5 5.0 4.2 1.7 116 chr2R 7052027 intergenic lbm + chr2R 7052085 intergenic lbm + chr2R 7052143 intergenic lbm + chr2R_9_7050001 chr2R_7050001 RAL-443 936 chr2R 7064905 7064922 chr2R 7064993 7064997 4 83 13.5 4.5 9.0 0.4 92 chr2R 7064905 intron Tsp42Er + chr2R 7064951 intron Tsp42Er + chr2R 7064997 intron Tsp42Er + chr2R_4_7060001 chr2R_7060001 RAL-443 937 chr2R 7067579 7067621 chr2R 7067683 7067725 11 104 5.5 4.5 5.0 1.8 146 chr2R 7067579 intergenic not near genes chr2R 7067652 intergenic not near genes chr2R 7067725 intergenic not near genes chr2R_11_7065001 chr2R_7065001 RAL-443 938 chr2R 7091190 7091240 chr2R 7091292 7091342 25 100 12.0 16.5 14.2 1.6 152 chr2R 7091190 intron esn + chr2R 7091266 intron esn + chr2R 7091342 intron esn + chr2R_25_7090001 chr2R_7090001 RAL-443 939 chr2R 7101608 7101647 chr2R 7101708 7101762 7 109 7.5 6.5 7.0 0.9 154 chr2R 7101608 intron esn + chr2R 7101685 intron esn + chr2R 7101762 intron esn + chr2R_7_7100001 chr2R_7100001 RAL-443 940 chr2R 7196557 7196570 chr2R 7201352 7201365 F-element 4 4795 11.0 9.5 10.2 0.4 4808 chr2R 7196557 intron pk + chr2R 7198961 intron pk + chr2R 7201365 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-443 941 chr2R 7196571 7196595 chr2R 7201340 7201390 F-element 16 4790 5.5 7.5 6.5 2.1 4819 chr2R 7196571 intron pk + chr2R 7198980 intron pk + chr2R 7201390 intron pk + chr2R_16_7195001 chr2R_7195001 RAL-443 942 chr2R 7209856 7209874 chr2R 7217624 7217655 roo 9 7773 1.5 6.0 3.8 1.9 7799 chr2R 7209856 intron pk + chr2R 7213756 intron pk + chr2R 7217655 intron pk + chr2R_9_7210001 chr2R_7210001 RAL-443 943 chr2R 7235810 7235852 chr2R 7240912 7240934 jockey 12 5096 3.0 2.5 2.8 3.2 5124 chr2R 7235810 intergenic not near genes chr2R 7238372 intergenic not near genes chr2R 7240934 intergenic not near genes chr2R_12_7235001 chr2R_7235001 RAL-443 944 chr2R 7434879 7434910 chr2R 7439200 7439231 Juan 12 4320 4.5 6.5 5.5 1.8 4352 chr2R 7434879 intergenic so + chr2R 7437055 intergenic not near genes chr2R 7439231 intergenic not near genes chr2R_12_7435001 chr2R_7435001 RAL-443 945 chr2R 7459265 7459291 chr2R 7459373 7459388 12 104 14.5 5.0 9.8 1.1 123 chr2R 7459265 intergenic Inos -,CG11141 - chr2R 7459326 intergenic CG11141 -,Inos - chr2R 7459388 intergenic CG11141 - chr2R_12_7455001 chr2R_7455001 RAL-443 946 chr2R 7608408 7608415 chr2R 7613630 7613638 I-element 4 5223 11.5 1.5 6.5 0.5 5230 chr2R 7608408 intron CG1358 - chr2R 7611023 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-443 947 chr2R 7608426 7608442 chr2R 7613617 7613664 I-element 5 5205 4.0 1.0 2.5 1.4 5238 chr2R 7608426 intron CG1358 - chr2R 7611045 intron CG1358 - chr2R 7613664 intron CG1358 - chr2R_5_7610001 chr2R_7610001 RAL-443 948 chr2R 7614729 7614777 chr2R 7614836 7614886 9 106 10.5 4.0 7.2 1.1 157 chr2R 7614729 intron CG1358 - chr2R 7614808 intron CG1358 - chr2R 7614886 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-443 949 chr2R 7691995 7692031 chr2R 7692096 7692132 16 101 6.5 7.0 6.8 2.1 137 chr2R 7691995 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692132 intron CG1399 - chr2R_16_7690001 chr2R_7690001 RAL-443 950 chr2R 7724580 7724627 chr2R 7725282 7725304 21 702 12.0 4.5 8.2 2.3 724 chr2R 7724580 intron CG18812 - chr2R 7724942 intron CG18812 - chr2R 7725304 intron CG18812 - chr2R_21_7720001 chr2R_7720001 RAL-443 951 chr2R 7730076 7730121 chr2R 7730176 7730221 12 99 4.5 8.0 6.2 1.7 145 chr2R 7730076 intron CG18812 - chr2R 7730148 intron CG18812 - chr2R 7730221 intron CG18812 - chr2R_12_7730001 chr2R_7730001 RAL-443 952 chr2R 7737890 7737905 chr2R 7737989 7738004 9 97 10.0 15.5 12.8 0.7 114 chr2R 7737890 intergenic not near genes chr2R 7737947 intergenic not near genes chr2R 7738004 intergenic not near genes chr2R_9_7735001 chr2R_7735001 RAL-443 953 chr2R 7760269 7760300 chr2R 7760426 7760437 10 150 3.5 3.0 3.2 2.4 168 chr2R 7760269 intron,intron CG30497 -,CG45093 - chr2R 7760353 intron,intron CG30497 -,CG45093 - chr2R 7760437 intron,intron CG30497 -,CG45093 - chr2R_10_7760001 chr2R_7760001 RAL-443 954 chr2R 7760301 7760304 chr2R 7760425 7760460 4 148 2.0 2.5 2.2 1.2 159 chr2R 7760301 intron,intron CG30497 -,CG45093 - chr2R 7760380 intron,intron CG30497 -,CG45093 - chr2R 7760460 intron,intron CG30497 -,CG45093 - chr2R_4_7760001 chr2R_7760001 RAL-443 955 chr2R 7815656 7815666 chr2R 7822145 7822155 Burdock 8 6488 10.5 7.0 8.8 0.8 6499 chr2R 7815656 intergenic CG1882 + chr2R 7818906 intergenic not near genes chr2R 7822155 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-443 956 chr2R 7815667 7815700 chr2R 7822140 7822149 Burdock 10 6481 4.0 6.5 5.2 1.6 6482 chr2R 7815667 intergenic CG1882 + chr2R 7818908 intergenic not near genes chr2R 7822149 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-443 957 chr2R 7869180 7869202 chr2R 7873986 7873992 Doc 5 4803 7.0 5.0 6.0 0.7 4812 chr2R 7869180 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873992 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-443 958 chr2R 7869203 7869211 chr2R 7873979 7873992 Doc 6 4792 5.0 5.0 5.0 1.0 4789 chr2R 7869203 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7873992 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-443 959 chr2R 7926911 7926928 chr2R 7927007 7927024 11 96 8.5 10.0 9.2 1.1 113 chr2R 7926911 intron CG8791 + chr2R 7926968 intron CG8791 + chr2R 7927024 intron CG8791 + chr2R_11_7925001 chr2R_7925001 RAL-443 960 chr2R 7997420 7997454 chr2R 7997546 7997579 8 126 3.5 7.5 5.5 1.2 159 chr2R 7997420 intron Hey - chr2R 7997500 intron Hey - chr2R 7997579 intron Hey - chr2R_8_7995001 chr2R_7995001 RAL-443 961 chr2R 8076675 8076706 chr2R 8076768 8076806 18 98 10.5 15.0 12.8 1.3 131 chr2R 8076675 intron lig + chr2R 8076740 intron lig + chr2R 8076806 intron lig + chr2R_18_8075001 chr2R_8075001 RAL-443 962 chr2R 8160929 8160942 chr2R 8161039 8161052 1360 4 108 15.0 22.0 18.5 0.2 123 chr2R 8160929 exon CG8708 - chr2R 8160990 intron CG8708 - chr2R 8161052 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-443 963 chr2R 8166550 8166578 chr2R 8168728 8168759 7 2179 25.0 16.5 20.8 0.3 2209 chr2R 8166550 exon Rs1 + chr2R 8167654 exon Rs1 + chr2R 8168759 exon Gasz + chr2R_7_8165001 chr2R_8165001 RAL-443 964 chr2R 8188197 8188222 chr2R 8188312 8188337 6 115 8.0 13.5 10.8 0.5 140 chr2R 8188197 intron LRP1 + chr2R 8188267 intron LRP1 + chr2R 8188337 intron LRP1 + chr2R_6_8185001 chr2R_8185001 RAL-443 965 chr2R 8236016 8236056 chr2R 8236117 8236156 9 98 3.0 2.5 2.8 2.4 140 chr2R 8236016 intergenic not near genes chr2R 8236086 intergenic not near genes chr2R 8236156 intergenic not near genes chr2R_9_8235001 chr2R_8235001 RAL-443 966 chr2R 8277635 8277667 chr2R 8277743 8277752 8 103 3.0 3.5 3.2 1.9 117 chr2R 8277635 5` UTR CR44280 + chr2R 8277694 5` UTR CR44280 + chr2R 8277752 5` UTR CR44280 + chr2R_8_8275001 chr2R_8275001 RAL-443 967 chr2R 8330846 8330892 chr2R 8331347 8331347 roo 23 501 2.0 8.5 5.2 3.7 501 chr2R 8330846 intron pdm3 + chr2R 8331096 intron pdm3 + chr2R 8331347 intron pdm3 + chr2R_23_8330001 chr2R_8330001 RAL-443 968 chr2R 8414267 8414285 chr2R 8414370 8414387 5 102 13.0 6.0 9.5 0.5 120 chr2R 8414267 intergenic not near genes chr2R 8414327 intergenic not near genes chr2R 8414387 intergenic not near genes chr2R_5_8410001 chr2R_8410001 RAL-443 969 chr2R 8414287 8414317 chr2R 8414369 8414385 11 91 4.5 5.5 5.0 1.8 98 chr2R 8414287 intergenic not near genes chr2R 8414336 intergenic not near genes chr2R 8414385 intergenic not near genes chr2R_11_8410001 chr2R_8410001 RAL-443 970 chr2R 8483948 8483986 chr2R 8484044 8484082 10 95 10.5 13.5 12.0 0.8 134 chr2R 8483948 intron mtt - chr2R 8484015 intron mtt - chr2R 8484082 intron mtt - chr2R_10_8480001 chr2R_8480001 RAL-443 971 chr2R 8524945 8524979 chr2R 8525086 8525138 8 152 6.5 8.5 7.5 0.9 193 chr2R 8524945 intron mtt - chr2R 8525042 intron mtt - chr2R 8525138 intron mtt - chr2R_8_8525001 chr2R_8525001 RAL-443 972 chr2R 8612562 8612606 chr2R 8612659 8612703 15 97 12.5 13.0 12.8 1.1 141 chr2R 8612562 intron CG8642 - chr2R 8612632 intron CG8642 - chr2R 8612703 intron CG8642 - chr2R_15_8610001 chr2R_8610001 RAL-443 973 chr2R 8635908 8635933 chr2R 8636000 8636030 4 96 0.0 6.0 3.0 1.0 122 chr2R 8635908 intergenic not near genes chr2R 8635969 intergenic not near genes chr2R 8636030 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-443 974 chr2R 8638330 8638364 chr2R 8638426 8638429 4 86 9.5 6.5 8.0 0.4 99 chr2R 8638330 intergenic not near genes chr2R 8638380 intergenic not near genes chr2R 8638429 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-443 975 chr2R 8697455 8697507 chr2R 8697554 8697606 16 97 5.0 8.0 6.5 2.1 151 chr2R 8697455 intron CG8738 + chr2R 8697530 intron CG8738 + chr2R 8697606 intron CG8738 + chr2R_16_8695001 chr2R_8695001 RAL-443 976 chr2R 8722747 8722779 chr2R 8723003 8723040 pogo 5 254 4.5 2.5 3.5 1.1 293 chr2R 8722747 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723040 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-443 977 chr2R 8729895 8729902 chr2R 8729996 8730003 4 100 8.5 9.5 9.0 0.4 108 chr2R 8729895 intron stmA - chr2R 8729949 intron stmA - chr2R 8730003 intron stmA - chr2R_4_8725001 chr2R_8725001 RAL-443 978 chr2R 8777926 8777943 chr2R 8784150 8784167 diver 8 6223 7.5 14.5 11.0 0.7 6241 chr2R 8777926 intergenic not near genes chr2R 8781046 intergenic not near genes chr2R 8784167 intergenic not near genes chr2R_8_8780001 chr2R_8780001 RAL-443 979 chr2R 8859634 8859680 chr2R 8859734 8859745 5 85 2.0 4.5 3.2 1.2 111 chr2R 8859634 intergenic not near genes chr2R 8859690 intergenic not near genes chr2R 8859745 intergenic not near genes chr2R_5_8855001 chr2R_8855001 RAL-443 980 chr2R 9047317 9047436 chr2R 9047421 9047551 12 110 3.5 3.0 3.2 2.9 234 chr2R 9047317 intron CG13743 - chr2R 9047434 intron CG13743 - chr2R 9047551 intron CG13743 - chr2R_12_9045001 chr2R_9045001 RAL-443 981 chr2R 9065894 9065945 chr2R 9065996 9066047 24 97 8.0 5.0 6.5 3.2 153 chr2R 9065894 intron ana + chr2R 9065970 intron ana + chr2R 9066047 intron ana + chr2R_24_9065001 chr2R_9065001 RAL-443 982 chr2R 9078465 9078511 chr2R 9078563 9078609 17 97 5.5 6.5 6.0 2.4 144 chr2R 9078465 intergenic CG8083 + chr2R 9078537 intergenic CG8083 + chr2R 9078609 intergenic CG8083 + chr2R_17_9075001 chr2R_9075001 RAL-443 983 chr2R 9151286 9151334 chr2R 9157776 9157814 Burdock 12 6488 3.5 5.5 4.5 2.2 6528 chr2R 9151286 exon CG30345 + chr2R 9154550 intergenic not near genes chr2R 9157814 intergenic CG8008 - chr2R_12_9150001 chr2R_9150001 RAL-443 984 chr2R 9161691 9161736 chr2R 9161808 9161851 4 120 20.5 28.0 24.2 0.2 160 chr2R 9161691 5` UTR CR44283 + chr2R 9161771 5` UTR CR44283 + chr2R 9161851 5` UTR CR44283 + chr2R_4_9160001 chr2R_9160001 RAL-443 985 chr2R 9212694 9212717 chr2R 9213195 9213223 roo 7 502 3.5 2.5 3.0 1.8 529 chr2R 9212694 intergenic CR45309 + chr2R 9212958 intergenic CR45309 + chr2R 9213223 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-443 986 chr2R 9230219 9230241 chr2R 9230303 9230325 5 90 11.5 5.5 8.5 0.5 106 chr2R 9230219 intron hig - chr2R 9230272 intron hig - chr2R 9230325 exon hig - chr2R_5_9230001 chr2R_9230001 RAL-443 987 chr2R 9236492 9236540 chr2R 9237284 9237333 17 789 8.5 9.5 9.0 1.7 841 chr2R 9236492 intron hig - chr2R 9236912 intron hig - chr2R 9237333 intron hig - chr2R_17_9235001 chr2R_9235001 RAL-443 988 chr2R 9368113 9368126 chr2R 9368203 9368207 4 89 5.5 0.5 3.0 1.0 94 chr2R 9368113 intron CG13954 - chr2R 9368160 intron CG13954 - chr2R 9368207 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-443 989 chr2R 9408675 9408717 chr2R 9408797 9408839 13 120 11.0 12.0 11.5 1.0 164 chr2R 9408675 intron wun - chr2R 9408757 intron wun - chr2R 9408839 intron wun - chr2R_13_9405001 chr2R_9405001 RAL-443 990 chr2R 9480058 9480105 chr2R 9490609 9490655 roo 17 10549 9.5 8.5 9.0 1.7 10597 chr2R 9480058 intergenic not near genes chr2R 9485356 intergenic not near genes chr2R 9490655 intergenic not near genes chr2R_17_9485001 chr2R_9485001 RAL-443 991 chr2R 9510655 9510695 chr2R 9510788 9510788 12 130 1.5 1.5 1.5 4.8 133 chr2R 9510655 intron brp + chr2R 9510722 intron brp + chr2R 9510788 intron brp + chr2R_12_9510001 chr2R_9510001 RAL-443 992 chr2R 9531897 9531907 chr2R 9531992 9531996 4 95 5.0 8.5 6.8 0.5 99 chr2R 9531897 intron brp + chr2R 9531946 intron brp + chr2R 9531996 intron brp + chr2R_4_9530001 chr2R_9530001 RAL-443 993 chr2R 9538693 9538732 chr2R 9538797 9538831 26 101 15.5 10.0 12.8 1.9 138 chr2R 9538693 3` UTR brp + chr2R 9538762 3` UTR brp + chr2R 9538831 3` UTR brp + chr2R_26_9535001 chr2R_9535001 RAL-443 994 chr2R 9538733 9538742 chr2R 9538796 9538845 6 97 13.5 10.0 11.8 0.5 112 chr2R 9538733 3` UTR brp + chr2R 9538789 3` UTR brp + chr2R 9538845 3` UTR brp + chr2R_6_9535001 chr2R_9535001 RAL-443 995 chr2R 9616619 9616645 chr2R 9616744 9616770 12 123 9.0 2.0 5.5 1.8 151 chr2R 9616619 intron Mmp2 - chr2R 9616694 intron Mmp2 - chr2R 9616770 intron Mmp2 - chr2R_12_9615001 chr2R_9615001 RAL-443 996 chr2R 9697239 9697276 chr2R 9697338 9697385 8 108 3.5 5.5 4.5 1.5 146 chr2R 9697239 intergenic not near genes chr2R 9697312 intergenic not near genes chr2R 9697385 intergenic not near genes chr2R_8_9695001 chr2R_9695001 RAL-443 997 chr2R 9721943 9721976 chr2R 9722225 9722233 11 283 5.0 4.5 4.8 1.9 290 chr2R 9721943 intron sqa - chr2R 9722088 intron sqa - chr2R 9722233 intron sqa - chr2R_11_9720001 chr2R_9720001 RAL-443 998 chr2R 9726597 9726643 chr2R 9734167 9734214 17.6 19 7571 5.0 8.0 6.5 2.5 7617 chr2R 9726597 intron sqa - chr2R 9730406 intron sqa - chr2R 9734214 intron sqa - chr2R_19_9730001 chr2R_9730001 RAL-443 999 chr2R 9788010 9788015 chr2R 9788409 9788423 5 407 4.5 6.0 5.2 0.8 413 chr2R 9788010 intron CG1688 - chr2R 9788216 intron CG1688 - chr2R 9788423 intron CG1688 - chr2R_5_9785001 chr2R_9785001 RAL-443 1000 chr2R 9788016 9788040 chr2R 9788398 9788439 9 401 1.5 4.5 3.0 2.2 423 chr2R 9788016 intron CG1688 - chr2R 9788228 intron CG1688 - chr2R 9788439 intron CG1688 - chr2R_9_9785001 chr2R_9785001 RAL-443 1001 chr2R 9805402 9805435 chr2R 9805503 9805536 5 101 6.0 1.5 3.8 1.0 134 chr2R 9805402 intron CG1688 - chr2R 9805469 intron CG1688 - chr2R 9805536 intron CG1688 - chr2R_5_9805001 chr2R_9805001 RAL-443 1002 chr2R 9810715 9810718 chr2R 9811166 9811189 10 455 44.5 27.0 35.8 0.3 474 chr2R 9810715 intergenic CG1648 - chr2R 9810952 intergenic CG1648 - chr2R 9811189 3` UTR CG1648 - chr2R_10_9810001 chr2R_9810001 RAL-443 1003 chr2R 9810714 9810755 chr2R 9811197 9811205 9 462 47.5 21.5 34.5 0.3 491 chr2R 9810714 intergenic CG1648 - chr2R 9810960 intergenic CG1648 - chr2R 9811205 3` UTR CG1648 - chr2R_9_9810001 chr2R_9810001 RAL-443 1004 chr2R 9871056 9871074 chr2R 9871526 9871574 roo 5 484 5.0 6.5 5.8 0.7 518 chr2R 9871056 intron cbx - chr2R 9871315 intron cbx - chr2R 9871574 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-443 1005 chr2R 9945417 9945437 chr2R 9945633 9945637 BS 5 213 7.0 2.0 4.5 0.9 220 chr2R 9945417 intron Mef2 - chr2R 9945527 intron Mef2 - chr2R 9945637 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-443 1006 chr2R 9945438 9945451 chr2R 9945628 9945646 BS 4 193 4.5 2.0 3.2 1.0 208 chr2R 9945438 intron Mef2 - chr2R 9945542 intron Mef2 - chr2R 9945646 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-443 1007 chr2R 9960969 9961022 chr2R 9961141 9961149 10 162 3.0 2.0 2.5 2.9 180 chr2R 9960969 exon Pal1 + chr2R 9961059 intron Pal1 + chr2R 9961149 intron Pal1 + chr2R_10_9960001 chr2R_9960001 RAL-443 1008 chr2R 10005538 10005579 chr2R 10005655 10005696 27 116 5.5 2.0 3.8 5.6 158 chr2R 10005538 intron Pka-R2 - chr2R 10005617 intron Pka-R2 - chr2R 10005696 intron Pka-R2 - chr2R_27_10005001 chr2R_10005001 RAL-443 1009 chr2R 10005832 10005884 chr2R 10007017 10007045 1360 8 1173 4.5 6.0 5.2 1.3 1213 chr2R 10005832 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-443 1010 chr2R 10047806 10047835 chr2R 10047898 10047938 7 99 8.0 5.5 6.8 0.9 132 chr2R 10047806 intron oys - chr2R 10047872 intron oys - chr2R 10047938 intron oys - chr2R_7_10045001 chr2R_10045001 RAL-443 1011 chr2R 10085282 10085336 chr2R 10085394 10085433 15 104 6.0 6.0 6.0 2.1 151 chr2R 10085282 5` UTR CG2269 + chr2R 10085358 5` UTR CG2269 + chr2R 10085433 intron CG2269 + chr2R_15_10085001 chr2R_10085001 RAL-443 1012 chr2R 10107169 10107185 chr2R 10107275 10107292 4 105 12.5 9.0 10.8 0.3 123 chr2R 10107169 intron 14-3-3zeta + chr2R 10107230 intron 14-3-3zeta + chr2R 10107292 intron 14-3-3zeta + chr2R_4_10105001 chr2R_10105001 RAL-443 1013 chr2R 10132169 10132220 chr2R 10132269 10132320 12 99 4.0 3.5 3.8 2.5 151 chr2R 10132169 intron gem + chr2R 10132244 intron gem + chr2R 10132320 exon gem + chr2R_12_10130001 chr2R_10130001 RAL-443 1014 chr2R 10167096 10167114 chr2R 10167191 10167210 4 94 5.0 3.0 4.0 0.8 114 chr2R 10167096 intron KCNQ - chr2R 10167153 intron KCNQ - chr2R 10167210 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-443 1015 chr2R 10171090 10171143 chr2R 10171194 10171247 13 104 3.0 4.5 3.8 2.7 157 chr2R 10171090 intron KCNQ - chr2R 10171168 intron KCNQ - chr2R 10171247 intron KCNQ - chr2R_13_10170001 chr2R_10170001 RAL-443 1016 chr2R 10172615 10172657 chr2R 10172747 10172784 14 131 4.5 1.5 3.0 3.5 169 chr2R 10172615 intron KCNQ - chr2R 10172700 intron KCNQ - chr2R 10172784 intron KCNQ - chr2R_14_10170001 chr2R_10170001 RAL-443 1017 chr2R 10176865 10176907 chr2R 10186052 10186094 roo 12 9185 5.5 6.5 6.0 1.7 9229 chr2R 10176865 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186094 intron KCNQ - chr2R_12_10180001 chr2R_10180001 RAL-443 1018 chr2R 10216192 10216223 chr2R 10216290 10216311 7 92 4.5 6.5 5.5 1.1 119 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216252 intron,intron CG12912 -,Hr46 - chr2R 10216311 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-443 1019 chr2R 10225721 10225752 chr2R 10225823 10225854 8 102 3.0 5.5 4.2 1.5 133 chr2R 10225721 intron,intron CG12912 -,Hr46 - chr2R 10225788 intron,intron CG12912 -,Hr46 - chr2R 10225854 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-443 1020 chr2R 10257139 10257193 chr2R 10257250 10257258 13 103 6.5 2.5 4.5 2.4 119 chr2R 10257139 intron CG12911 + chr2R 10257198 intron CG12911 + chr2R 10257258 intron CG12911 + chr2R_13_10255001 chr2R_10255001 RAL-443 1021 chr2R 10274801 10274826 chr2R 10274897 10274922 9 95 9.0 0.5 4.8 1.6 121 chr2R 10274801 intron CAP + chr2R 10274862 intron CAP + chr2R 10274922 intron CAP + chr2R_9_10270001 chr2R_10270001 RAL-443 1022 chr2R 10313314 10313353 chr2R 10313407 10313449 16 105 1.5 7.0 4.2 3.1 135 chr2R 10313314 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313449 intergenic Ndg + chr2R_16_10310001 chr2R_10310001 RAL-443 1023 chr2R 10370489 10370526 chr2R 10370652 10370689 15 161 4.5 2.0 3.2 3.6 200 chr2R 10370489 intron CG42732 - chr2R 10370589 intron CG42732 - chr2R 10370689 intron CG42732 - chr2R_15_10370001 chr2R_10370001 RAL-443 1024 chr2R 10417419 10417450 chr2R 10417533 10417554 4 113 39.5 39.5 39.5 0.1 135 chr2R 10417419 intergenic CG42732 - chr2R 10417486 intergenic CG42732 - chr2R 10417554 intergenic not near genes chr2R_4_10415001 chr2R_10415001 RAL-443 1025 chr2R 10477141 10477182 chr2R 10477501 10477542 9 360 1.5 0.5 1.0 4.5 401 chr2R 10477141 intron whd - chr2R 10477342 intron whd - chr2R 10477542 intron whd - chr2R_9_10475001 chr2R_10475001 RAL-443 1026 chr2R 10551042 10551178 chr2R 10551153 10551317 7 119 0.0 0.5 0.2 5.8 275 chr2R 10551042 intergenic not near genes chr2R 10551180 intergenic not near genes chr2R 10551317 intergenic not near genes chr2R_7_10550001 chr2R_10550001 RAL-443 1027 chr2R 10563241 10563255 chr2R 10563339 10563373 4 112 0.0 4.5 2.2 1.2 132 chr2R 10563241 intron psq + chr2R 10563307 intron psq + chr2R 10563373 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-443 1028 chr2R 10571990 10572038 chr2R 10572202 10572250 8 198 8.0 3.0 5.5 1.2 260 chr2R 10571990 intron psq + chr2R 10572120 intron psq + chr2R 10572250 intron psq + chr2R_8_10570001 chr2R_10570001 RAL-443 1029 chr2R 10622336 10622353 chr2R 10637117 10637136 mdg1 4 14782 8.5 5.0 6.8 0.5 14800 chr2R 10622336 intron CG11883 + chr2R 10629736 intron CG11883 + chr2R 10637136 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-443 1030 chr2R 10705066 10705120 chr2R 10705490 10705544 17 421 2.5 7.0 4.8 2.9 478 chr2R 10705066 intron stan + chr2R 10705305 intron stan + chr2R 10705544 intron stan + chr2R_17_10705001 chr2R_10705001 RAL-443 1031 chr2R 10757697 10757720 chr2R 10757790 10757811 8 94 10.5 3.5 7.0 1.0 114 chr2R 10757697 intron CG33144 - chr2R 10757754 intron CG33144 - chr2R 10757811 intron CG33144 - chr2R_8_10755001 chr2R_10755001 RAL-443 1032 chr2R 10757723 10757742 chr2R 10757787 10757835 9 91 4.0 3.5 3.8 1.9 112 chr2R 10757723 intron CG33144 - chr2R 10757779 intron CG33144 - chr2R 10757835 intron CG33144 - chr2R_9_10755001 chr2R_10755001 RAL-443 1033 chr2R 10794889 10794941 chr2R 10794987 10795039 15 97 5.0 3.0 4.0 3.0 150 chr2R 10794889 intron CG33144 - chr2R 10794964 intron CG33144 - chr2R 10795039 intron CG33144 - chr2R_15_10790001 chr2R_10790001 RAL-443 1034 chr2R 10796691 10796730 chr2R 10796810 10796828 4 109 2.5 0.5 1.5 1.6 137 chr2R 10796691 intron CG33144 - chr2R 10796760 intron CG33144 - chr2R 10796828 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-443 1035 chr2R 10947072 10947125 chr2R 10947179 10947223 5 105 6.5 0.0 3.2 1.2 151 chr2R 10947072 5` UTR CR45228 + chr2R 10947148 intergenic CR45228 + chr2R 10947223 intergenic CR45228 + chr2R_5_10945001 chr2R_10945001 RAL-443 1036 chr2R 10959070 10959112 chr2R 10959169 10959180 10 93 3.0 2.0 2.5 2.9 110 chr2R 10959070 intergenic not near genes chr2R 10959125 intergenic not near genes chr2R 10959180 intergenic not near genes chr2R_10_10955001 chr2R_10955001 RAL-443 1037 chr2R 10979649 10979686 chr2R 10980134 10980174 297 7 481 0.5 3.0 1.8 2.5 525 chr2R 10979649 intergenic not near genes chr2R 10979912 intergenic not near genes chr2R 10980174 intergenic not near genes chr2R_7_10975001 chr2R_10975001 RAL-443 1038 chr2R 10987195 10987212 chr2R 10987498 10987515 4 303 1.0 2.0 1.5 1.6 320 chr2R 10987195 intron luna - chr2R 10987355 intron luna - chr2R 10987515 intron luna - chr2R_4_10985001 chr2R_10985001 RAL-443 1039 chr2R 10987217 10987244 chr2R 10987497 10987515 10 288 0.5 2.0 1.2 4.5 298 chr2R 10987217 intron luna - chr2R 10987366 intron luna - chr2R 10987515 intron luna - chr2R_10_10985001 chr2R_10985001 RAL-443 1040 chr2R 11009805 11009839 chr2R 11018988 11019015 roo 5 9183 3.0 4.0 3.5 1.1 9210 chr2R 11009805 intron luna - chr2R 11014410 intron luna - chr2R 11019015 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-443 1041 chr2R 11019886 11019899 chr2R 11024941 11024959 jockey 4 5059 3.0 1.0 2.0 1.3 5073 chr2R 11019886 intron luna - chr2R 11022422 intron luna - chr2R 11024959 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-443 1042 chr2R 11102849 11102890 chr2R 11102946 11102961 11 94 3.5 0.0 1.8 3.9 112 chr2R 11102849 intron luna - chr2R 11102905 intron luna - chr2R 11102961 intron luna - chr2R_11_11100001 chr2R_11100001 RAL-443 1043 chr2R 11134091 11134143 chr2R 11134351 11134403 pogo 21 258 4.5 4.0 4.2 4.0 312 chr2R 11134091 intergenic not near genes chr2R 11134247 intergenic not near genes chr2R 11134403 intergenic not near genes chr2R_21_11130001 chr2R_11130001 RAL-443 1044 chr2R 11158849 11158896 chr2R 11159038 11159085 19 186 4.5 5.0 4.8 3.3 236 chr2R 11158849 intron CG13229 - chr2R 11158967 intron CG13229 - chr2R 11159085 intron,5` UTR CG13229 -,shn + chr2R_19_11155001 chr2R_11155001 RAL-443 1045 chr2R 11161643 11161657 chr2R 11161802 11161817 7 157 9.5 7.5 8.5 0.7 174 chr2R 11161643 intron,intron CG13229 -,shn + chr2R 11161730 intron,intron CG13229 -,shn + chr2R 11161817 intron,intron CG13229 -,shn + chr2R_7_11160001 chr2R_11160001 RAL-443 1046 chr2R 11170828 11170846 chr2R 11170949 11170949 4 116 4.0 3.0 3.5 0.9 121 chr2R 11170828 intron,intron CG13229 -,shn + chr2R 11170888 intron,intron CG13229 -,shn + chr2R 11170949 intron,intron CG13229 -,shn + chr2R_4_11170001 chr2R_11170001 RAL-443 1047 chr2R 11179251 11179296 chr2R 11179357 11179358 16 96 5.5 4.0 4.8 2.8 107 chr2R 11179251 intron shn + chr2R 11179304 intron shn + chr2R 11179358 intron shn + chr2R_16_11175001 chr2R_11175001 RAL-443 1048 chr2R 11207816 11207843 chr2R 11208010 11208055 BS 14 202 5.5 8.0 6.8 1.8 239 chr2R 11207816 intron shn + chr2R 11207936 intron shn + chr2R 11208055 intron shn + chr2R_14_11205001 chr2R_11205001 RAL-443 1049 chr2R 11249171 11249197 chr2R 11249305 11249309 6 133 5.5 0.0 2.8 1.6 138 chr2R 11249171 intergenic CG43112 + chr2R 11249240 intergenic CG43112 + chr2R 11249309 intergenic CG43112 + chr2R_6_11245001 chr2R_11245001 RAL-443 1050 chr2R 11260501 11260548 chr2R 11260625 11260643 10 121 0.5 1.0 0.8 5.6 142 chr2R 11260501 intergenic not near genes chr2R 11260572 intergenic not near genes chr2R 11260643 intergenic Cpr47Ed - chr2R_10_11260001 chr2R_11260001 RAL-443 1051 chr2R 11263831 11263840 chr2R 11263961 11263976 4 134 0.0 10.5 5.2 0.6 145 chr2R 11263831 intergenic not near genes chr2R 11263904 intergenic not near genes chr2R 11263976 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-443 1052 chr2R 11297619 11297632 chr2R 11301963 11301976 flea 5 4344 6.5 0.5 3.5 1.1 4357 chr2R 11297619 intergenic CG42336 - chr2R 11299798 intergenic not near genes chr2R 11301976 5` UTR CG7741 + chr2R_5_11295001 chr2R_11295001 RAL-443 1053 chr2R 11336560 11336614 chr2R 11336663 11336696 20 96 8.0 7.0 7.5 2.4 136 chr2R 11336560 intergenic sha +,lambdaTry + chr2R 11336628 intergenic sha +,lambdaTry + chr2R 11336696 intergenic lambdaTry +,sha + chr2R_20_11335001 chr2R_11335001 RAL-443 1054 chr2R 11344145 11344152 chr2R 11344249 11344268 4 110 0.0 6.5 3.2 1.0 123 chr2R 11344145 intergenic alphaTry - chr2R 11344206 intergenic alphaTry - chr2R 11344268 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-443 1055 chr2R 11368009 11368056 chr2R 11368105 11368152 7 94 2.0 3.0 2.5 2.0 143 chr2R 11368009 intron CG13204 + chr2R 11368080 intron CG13204 + chr2R 11368152 intron CG13204 + chr2R_7_11365001 chr2R_11365001 RAL-443 1056 chr2R 11391234 11391272 chr2R 11391316 11391368 12 85 6.5 5.5 6.0 1.7 134 chr2R 11391234 intron sprt - chr2R 11391301 intron sprt - chr2R 11391368 intron sprt - chr2R_12_11390001 chr2R_11390001 RAL-443 1057 chr2R 11415532 11415551 chr2R 11418665 11418718 opus 17 3147 3.0 6.0 4.5 3.1 3186 chr2R 11415532 intron Drip - chr2R 11417125 intron Drip - chr2R 11418718 intron Drip - chr2R_17_11415001 chr2R_11415001 RAL-443 1058 chr2R 11472653 11472679 chr2R 11473844 11473896 pogo 13 1205 4.0 8.0 6.0 1.9 1243 chr2R 11472653 intergenic not near genes chr2R 11473274 intergenic not near genes chr2R 11473896 intergenic not near genes chr2R_13_11470001 chr2R_11470001 RAL-443 1059 chr2R 11555375 11555419 chr2R 11555730 11555774 6 355 2.5 1.5 2.0 2.0 399 chr2R 11555375 intergenic not near genes chr2R 11555574 intergenic not near genes chr2R 11555774 intergenic not near genes chr2R_6_11555001 chr2R_11555001 RAL-443 1060 chr2R 11568679 11568725 chr2R 11568808 11568831 15 127 2.5 2.0 2.2 4.7 152 chr2R 11568679 intergenic not near genes chr2R 11568755 intergenic not near genes chr2R 11568831 intergenic not near genes chr2R_15_11565001 chr2R_11565001 RAL-443 1061 chr2R 11614606 11614799 chr2R 11614714 11614907 26 106 7.5 7.0 7.2 3.2 301 chr2R 11614606 intron tou - chr2R 11614756 intron tou - chr2R 11614907 intron tou - chr2R_26_11610001 chr2R_11610001 RAL-443 1062 chr2R 11631379 11631408 chr2R 11631479 11631508 6 100 1.0 2.5 1.8 2.1 129 chr2R 11631379 intron CG9005 - chr2R 11631444 intron CG9005 - chr2R 11631508 intron CG9005 - chr2R_6_11630001 chr2R_11630001 RAL-443 1063 chr2R 11675643 11675669 chr2R 11675741 11675767 5 94 7.0 2.0 4.5 0.9 124 chr2R 11675643 intron Roc2 - chr2R 11675705 intron Roc2 - chr2R 11675767 intron Roc2 - chr2R_5_11675001 chr2R_11675001 RAL-443 1064 chr2R 11689914 11689966 chr2R 11690169 11690221 17 250 2.5 5.5 4.0 3.4 307 chr2R 11689914 intron wal - chr2R 11690068 intron wal - chr2R 11690221 intron wal - chr2R_17_11690001 chr2R_11690001 RAL-443 1065 chr2R 11959208 11959243 chr2R 11959407 11959442 8 192 6.0 5.0 5.5 1.2 234 chr2R 11959208 intron CG13188 + chr2R 11959325 intron CG13188 + chr2R 11959442 intron CG13188 + chr2R_8_11955001 chr2R_11955001 RAL-443 1066 chr2R 12124808 12124852 chr2R 12124912 12124949 14 100 4.0 3.0 3.5 3.1 141 chr2R 12124808 intergenic not near genes chr2R 12124878 intergenic not near genes chr2R 12124949 intergenic not near genes chr2R_14_12120001 chr2R_12120001 RAL-443 1067 chr2R 12178909 12178937 chr2R 12179009 12179026 7 98 5.0 2.5 3.8 1.5 117 chr2R 12178909 intergenic CR45264 +,EndoG - chr2R 12178968 intergenic CR45264 +,EndoG - chr2R 12179026 5` UTR CR45264 + chr2R_7_12175001 chr2R_12175001 RAL-443 1068 chr2R 12185981 12186037 chr2R 12186096 12186121 26 108 3.0 9.0 6.0 3.7 140 chr2R 12185981 intron Cyp6g1 + chr2R 12186051 intron Cyp6g1 + chr2R 12186121 intron Cyp6g1 + chr2R_26_12185001 chr2R_12185001 RAL-443 1069 chr2R 12210113 12210164 chr2R 12210214 12210245 17 99 3.0 5.5 4.2 3.3 132 chr2R 12210113 exon Sr-CII - chr2R 12210179 intron Sr-CII - chr2R 12210245 intron Sr-CII - chr2R_17_12210001 chr2R_12210001 RAL-443 1070 chr2R 12228363 12228400 chr2R 12228502 12228539 17 138 0.0 8.0 4.0 3.4 176 chr2R 12228363 intron CG8854 - chr2R 12228451 intron CG8854 - chr2R 12228539 intron CG8854 - chr2R_17_12225001 chr2R_12225001 RAL-443 1071 chr2R 12240742 12240766 chr2R 12240838 12240858 4 95 3.5 0.0 1.8 1.4 116 chr2R 12240742 exon CG13170 + chr2R 12240800 3` UTR CG13170 + chr2R 12240858 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-443 1072 chr2R 12249255 12249300 chr2R 12249359 12249404 9 103 6.0 5.0 5.5 1.4 149 chr2R 12249255 intergenic not near genes chr2R 12249330 intergenic not near genes chr2R 12249404 intergenic not near genes chr2R_9_12245001 chr2R_12245001 RAL-443 1073 chr2R 12265220 12265229 chr2R 12265351 12265361 6 129 3.5 5.0 4.2 1.2 141 chr2R 12265220 intron Cam + chr2R 12265290 intron Cam + chr2R 12265361 intron Cam + chr2R_6_12265001 chr2R_12265001 RAL-443 1074 chr2R 12265232 12265238 chr2R 12265342 12265369 4 122 3.5 3.5 3.5 0.9 137 chr2R 12265232 intron Cam + chr2R 12265300 intron Cam + chr2R 12265369 intron Cam + chr2R_4_12265001 chr2R_12265001 RAL-443 1075 chr2R 12284320 12284328 chr2R 12284389 12284432 5 92 0.0 7.0 3.5 1.1 112 chr2R 12284320 intron CG42700 + chr2R 12284376 intron CG42700 + chr2R 12284432 intron CG42700 + chr2R_5_12280001 chr2R_12280001 RAL-443 1076 chr2R 12320705 12320731 chr2R 12320985 12320992 7 272 3.0 4.5 3.8 1.5 287 chr2R 12320705 3` UTR CR44316 - chr2R 12320848 intron CR44316 - chr2R 12320992 intergenic CR44316 -,CG13163 + chr2R_7_12320001 chr2R_12320001 RAL-443 1077 chr2R 12334874 12334886 chr2R 12334971 12334984 5 98 7.5 3.5 5.5 0.8 110 chr2R 12334874 intergenic CG8490 + chr2R 12334929 intergenic CG8490 + chr2R 12334984 intergenic CG8490 + chr2R_5_12330001 chr2R_12330001 RAL-443 1078 chr2R 12363370 12363382 chr2R 12363822 12363834 9 452 11.5 7.0 9.2 0.9 464 chr2R 12363370 intergenic CG30043 + chr2R 12363602 intergenic CG30043 + chr2R 12363834 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-443 1079 chr2R 12363384 12363405 chr2R 12363814 12363857 10 448 8.0 6.5 7.2 1.2 473 chr2R 12363384 intergenic CG30043 + chr2R 12363620 intergenic CG30043 + chr2R 12363857 intergenic not near genes chr2R_10_12360001 chr2R_12360001 RAL-443 1080 chr2R 12501691 12501703 chr2R 12503862 12503879 Rt1c 4 2176 5.5 7.0 6.2 0.6 2188 chr2R 12501691 intron fdl - chr2R 12502785 intron fdl - chr2R 12503879 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-443 1081 chr2R 12531576 12531613 chr2R 12531669 12531716 21 102 4.5 3.5 4.0 4.2 140 chr2R 12531576 intron fra + chr2R 12531646 intron fra + chr2R 12531716 intron fra + chr2R_21_12530001 chr2R_12530001 RAL-443 1082 chr2R 12540463 12540496 chr2R 12540566 12540599 5 92 2.5 2.5 2.5 1.4 136 chr2R 12540463 intron fra + chr2R 12540531 intron fra + chr2R 12540599 intron fra + chr2R_5_12540001 chr2R_12540001 RAL-443 1083 chr2R 12565549 12565555 chr2R 12565947 12565953 4 398 0.5 8.0 4.2 0.8 404 chr2R 12565549 intergenic not near genes chr2R 12565751 intergenic Cyp301a1 + chr2R 12565953 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-443 1084 chr2R 12565575 12565591 chr2R 12565944 12565956 6 366 0.5 7.0 3.8 1.2 381 chr2R 12565575 intergenic not near genes chr2R 12565766 intergenic Cyp301a1 + chr2R 12565956 intergenic Cyp301a1 + chr2R_6_12565001 chr2R_12565001 RAL-443 1085 chr2R 12627492 12627494 chr2R 12627605 12627605 4 112 0.0 12.5 6.2 0.6 113 chr2R 12627492 intron CG17760 + chr2R 12627548 intron CG17760 + chr2R 12627605 exon CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-443 1086 chr2R 12627495 12627501 chr2R 12627587 12627609 4 106 0.0 8.5 4.2 0.8 114 chr2R 12627495 intron CG17760 + chr2R 12627552 intron CG17760 + chr2R 12627609 exon CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-443 1087 chr2R 12700795 12700849 chr2R 12700904 12700906 10 89 3.5 1.0 2.2 3.1 111 chr2R 12700795 3` UTR wuc + chr2R 12700850 3` UTR wuc + chr2R 12700906 intergenic wuc + chr2R_10_12700001 chr2R_12700001 RAL-443 1088 chr2R 12707497 12707549 chr2R 12715883 12715935 roo 22 8384 4.5 2.5 3.5 4.9 8438 chr2R 12707497 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715935 intron CG42663 + chr2R_22_12710001 chr2R_12710001 RAL-443 1089 chr2R 12739126 12739148 chr2R 12739211 12739234 5 86 4.5 1.5 3.0 1.2 108 chr2R 12739126 intron CG42663 + chr2R 12739180 intron CG42663 + chr2R 12739234 intron CG42663 + chr2R_5_12735001 chr2R_12735001 RAL-443 1090 chr2R 12789305 12789325 chr2R 12797669 12797692 roo 6 8370 3.5 2.5 3.0 1.5 8387 chr2R 12789305 intron,3` UTR sca +,CR45137 - chr2R 12793498 intron,intron sca +,CR45137 - chr2R 12797692 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-443 1091 chr2R 12836367 12836417 chr2R 12836474 12836524 15 99 6.5 7.0 6.8 1.9 157 chr2R 12836367 intergenic not near genes chr2R 12836446 intergenic not near genes chr2R 12836524 intergenic not near genes chr2R_15_12835001 chr2R_12835001 RAL-443 1092 chr2R 12950104 12950124 chr2R 12950205 12950219 5 101 4.5 0.0 2.2 1.6 115 chr2R 12950104 intron CG44251 - chr2R 12950162 intron CG44251 - chr2R 12950219 intron CG44251 - chr2R_5_12950001 chr2R_12950001 RAL-443 1093 chr2R 12956962 12956976 chr2R 12957162 12957174 4 200 18.5 6.5 12.5 0.3 212 chr2R 12956962 intergenic not near genes chr2R 12957068 intergenic not near genes chr2R 12957174 intergenic not near genes chr2R_4_12955001 chr2R_12955001 RAL-443 1094 chr2R 12956983 12957004 chr2R 12957155 12957203 4 181 11.0 3.5 7.2 0.5 220 chr2R 12956983 intergenic not near genes chr2R 12957093 intergenic not near genes chr2R 12957203 intergenic not near genes chr2R_4_12955001 chr2R_12955001 RAL-443 1095 chr2R 13078371 13078414 chr2R 13078524 13078567 13 152 4.5 10.5 7.5 1.5 196 chr2R 13078371 intron Drl-2 - chr2R 13078469 intron Drl-2 - chr2R 13078567 intron Drl-2 - chr2R_13_13075001 chr2R_13075001 RAL-443 1096 chr2R 13089761 13089774 chr2R 13089863 13089884 4 104 5.0 3.5 4.2 0.8 123 chr2R 13089761 intergenic not near genes chr2R 13089822 intergenic not near genes chr2R 13089884 intergenic not near genes chr2R_4_13085001 chr2R_13085001 RAL-443 1097 chr2R 13107846 13107850 chr2R 13107955 13107959 6 109 10.5 0.0 5.2 1.0 113 chr2R 13107846 intergenic not near genes chr2R 13107902 intergenic not near genes chr2R 13107959 intergenic not near genes chr2R_6_13105001 chr2R_13105001 RAL-443 1098 chr2R 13136826 13136862 chr2R 13141644 13141665 Doc 14 4816 3.5 2.0 2.8 3.7 4839 chr2R 13136826 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-443 1099 chr2R 13167412 13167446 chr2R 13167526 13167560 13 114 12.5 0.0 6.2 1.8 148 chr2R 13167412 intron GLaz - chr2R 13167486 intron GLaz - chr2R 13167560 intron GLaz - chr2R_13_13165001 chr2R_13165001 RAL-443 1100 chr2R 13249558 13249584 chr2R 13249667 13249677 7 105 10.5 0.5 5.5 1.1 119 chr2R 13249558 intron CG4712 - chr2R 13249618 intron CG4712 - chr2R 13249677 intron CG4712 - chr2R_7_13245001 chr2R_13245001 RAL-443 1101 chr2R 13249588 13249598 chr2R 13249662 13249707 7 96 6.0 0.5 3.2 1.7 119 chr2R 13249588 intron CG4712 - chr2R 13249648 intron CG4712 - chr2R 13249707 intron CG4712 - chr2R_7_13245001 chr2R_13245001 RAL-443 1102 chr2R 13257257 13257297 chr2R 13257346 13257397 14 96 4.0 7.0 5.5 2.2 140 chr2R 13257257 exon CG4716 + chr2R 13257327 exon CG4716 + chr2R 13257397 3` UTR CG4716 + chr2R_14_13255001 chr2R_13255001 RAL-443 1103 chr2R 13290314 13290318 chr2R 13290455 13290484 5 158 0.0 2.0 1.0 2.5 170 chr2R 13290314 intron Dh31-R - chr2R 13290399 intron Dh31-R - chr2R 13290484 intron Dh31-R - chr2R_5_13290001 chr2R_13290001 RAL-443 1104 chr2R 13364687 13364731 chr2R 13364793 13364835 18 104 3.0 6.5 4.8 3.1 148 chr2R 13364687 intergenic not near genes chr2R 13364761 intergenic not near genes chr2R 13364835 intergenic not near genes chr2R_18_13360001 chr2R_13360001 RAL-443 1105 chr2R 13403905 13403935 chr2R 13404010 13404040 12 105 7.0 5.5 6.2 1.7 135 chr2R 13403905 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404040 intergenic not near genes chr2R_12_13400001 chr2R_13400001 RAL-443 1106 chr2R 13431468 13431516 chr2R 13431567 13431595 18 96 5.5 1.5 3.5 4.0 127 chr2R 13431468 intron CG42321 - chr2R 13431532 intron CG42321 - chr2R 13431595 intron CG42321 - chr2R_18_13430001 chr2R_13430001 RAL-443 1107 chr2R 13544543 13544587 chr2R 13544639 13544683 7 88 0.0 8.5 4.2 1.3 140 chr2R 13544543 intron CG6145 - chr2R 13544613 intron CG6145 - chr2R 13544683 intron CG6145 - chr2R_7_13540001 chr2R_13540001 RAL-443 1108 chr2R 13547080 13547107 chr2R 13547285 13547306 9 211 2.0 8.0 5.0 1.5 226 chr2R 13547080 intron CG6145 - chr2R 13547193 intron CG6145 - chr2R 13547306 intron CG6145 - chr2R_9_13545001 chr2R_13545001 RAL-443 1109 chr2R 13566238 13566278 chr2R 13566338 13566365 13 96 7.0 0.0 3.5 2.9 127 chr2R 13566238 intergenic not near genes chr2R 13566302 intergenic not near genes chr2R 13566365 intergenic not near genes chr2R_13_13565001 chr2R_13565001 RAL-443 1110 chr2R 13580482 13580523 chr2R 13580852 13580888 jockey 5 364 2.0 5.0 3.5 1.1 406 chr2R 13580482 3` UTR CG6191 - chr2R 13580685 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580888 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-443 1111 chr2R 13599044 13599074 chr2R 13599131 13599172 4 96 2.0 4.5 3.2 1.0 128 chr2R 13599044 intergenic S-Lap5 + chr2R 13599108 intergenic S-Lap5 + chr2R 13599172 intergenic S-Lap5 + chr2R_4_13595001 chr2R_13595001 RAL-443 1112 chr2R 13607738 13607750 chr2R 13607867 13607890 5 137 5.5 0.0 2.8 1.3 152 chr2R 13607738 intergenic not near genes chr2R 13607814 intergenic not near genes chr2R 13607890 intergenic not near genes chr2R_5_13605001 chr2R_13605001 RAL-443 1113 chr2R 13631070 13631094 chr2R 13631165 13631214 8 112 5.5 3.0 4.2 1.5 144 chr2R 13631070 intron fas + chr2R 13631142 intron fas + chr2R 13631214 intron fas + chr2R_8_13630001 chr2R_13630001 RAL-443 1114 chr2R 13694607 13694654 chr2R 13694704 13694733 7 88 2.5 3.0 2.8 1.8 126 chr2R 13694607 intron fas + chr2R 13694670 intron fas + chr2R 13694733 intron fas + chr2R_7_13690001 chr2R_13690001 RAL-443 1115 chr2R 13709834 13709854 chr2R 13709947 13709967 11 112 3.0 13.0 8.0 1.2 133 chr2R 13709834 intron fas + chr2R 13709900 intron fas + chr2R 13709967 intron fas + chr2R_11_13705001 chr2R_13705001 RAL-443 1116 chr2R 13721184 13721227 chr2R 13721287 13721329 11 96 3.5 1.5 2.5 3.1 145 chr2R 13721184 intron fas + chr2R 13721256 intron fas + chr2R 13721329 intron fas + chr2R_11_13720001 chr2R_13720001 RAL-443 1117 chr2R 13728119 13728161 chr2R 13735796 13735838 opus 23 7676 7.0 11.5 9.2 2.3 7719 chr2R 13728119 intron fas + chr2R 13731978 intron fas + chr2R 13735838 intron fas + chr2R_23_13730001 chr2R_13730001 RAL-443 1118 chr2R 13793146 13793158 chr2R 13793226 13793254 4 86 5.0 4.5 4.8 0.7 108 chr2R 13793146 intergenic not near genes chr2R 13793200 intergenic not near genes chr2R 13793254 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-443 1119 chr2R 13888740 13888790 chr2R 13888837 13888900 12 96 6.0 0.0 3.0 3.0 160 chr2R 13888740 intron shot - chr2R 13888820 intron shot - chr2R 13888900 intron shot - chr2R_12_13885001 chr2R_13885001 RAL-443 1120 chr2R 13892252 13892306 chr2R 13892585 13892629 20 321 1.5 7.0 4.2 3.8 377 chr2R 13892252 intron shot - chr2R 13892440 intron shot - chr2R 13892629 intron shot - chr2R_20_13890001 chr2R_13890001 RAL-443 1121 chr2R 13908963 13908999 chr2R 13909081 13909117 16 118 5.5 2.0 3.8 3.3 154 chr2R 13908963 intron shot - chr2R 13909040 intron shot - chr2R 13909117 intron shot - chr2R_16_13905001 chr2R_13905001 RAL-443 1122 chr2R 13925850 13925892 chr2R 13926024 13926065 20 169 9.5 5.5 7.5 2.4 215 chr2R 13925850 intron shot - chr2R 13925958 intron shot - chr2R 13926065 intron shot - chr2R_20_13925001 chr2R_13925001 RAL-443 1123 chr2R 14086654 14086662 chr2R 14086737 14086761 4 94 0.5 10.0 5.2 0.6 107 chr2R 14086654 intron Prosap - chr2R 14086708 intron Prosap - chr2R 14086761 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-443 1124 chr2R 14093412 14093445 chr2R 14109583 14109590 5 16164 8.0 2.0 5.0 0.8 16178 chr2R 14093412 intron Prosap - chr2R 14101501 intron Prosap - chr2R 14109590 intron Prosap - chr2R_5_14100001 chr2R_14100001 RAL-443 1125 chr2R 14110966 14110979 chr2R 14111230 14111243 4 264 8.0 6.5 7.2 0.5 277 chr2R 14110966 intron Prosap - chr2R 14111104 intron Prosap - chr2R 14111243 intron Prosap - chr2R_4_14110001 chr2R_14110001 RAL-443 1126 chr2R 14110985 14110991 chr2R 14111229 14111250 6 254 7.0 6.5 6.8 0.8 265 chr2R 14110985 intron Prosap - chr2R 14111118 intron Prosap - chr2R 14111250 intron Prosap - chr2R_6_14110001 chr2R_14110001 RAL-443 1127 chr2R 14357544 14357577 chr2R 14357647 14357687 12 108 5.5 9.0 7.2 1.5 143 chr2R 14357544 intergenic CG8617 -,Arc1 - chr2R 14357616 intergenic Arc1 -,CG8617 - chr2R 14357687 intergenic Arc1 -,CG8617 - chr2R_12_14355001 chr2R_14355001 RAL-443 1128 chr2R 14393852 14393896 chr2R 14393950 14393956 8 88 4.5 3.5 4.0 1.6 104 chr2R 14393852 intergenic not near genes chr2R 14393904 intergenic not near genes chr2R 14393956 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-443 1129 chr2R 14394210 14394244 chr2R 14399018 14399031 Doc 9 4806 6.5 0.0 3.2 2.1 4821 chr2R 14394210 intergenic not near genes chr2R 14396620 intergenic not near genes chr2R 14399031 intergenic not near genes chr2R_9_14395001 chr2R_14395001 RAL-443 1130 chr2R 14467288 14467327 chr2R 14476465 14476483 roo 10 9173 3.5 4.5 4.0 2.0 9195 chr2R 14467288 intergenic not near genes chr2R 14471886 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-443 1131 chr2R 14497379 14497416 chr2R 14498554 14498602 1360 20 1184 4.5 4.5 4.5 3.6 1223 chr2R 14497379 3` UTR Cpsf160 - chr2R 14497990 intron Cpsf160 - chr2R 14498602 3` UTR Cpsf160 - chr2R_20_14495001 chr2R_14495001 RAL-443 1132 chr2R 14513629 14513676 chr2R 14513731 14513774 12 101 3.5 3.5 3.5 2.7 145 chr2R 14513629 intron Cpr51A - chr2R 14513702 intron Cpr51A - chr2R 14513774 intron Cpr51A - chr2R_12_14510001 chr2R_14510001 RAL-443 1133 chr2R 14514464 14514499 chr2R 14514579 14514612 5 109 2.5 5.0 3.8 1.0 148 chr2R 14514464 intron,intron Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514612 intron,intron Cpr51A -,CG30197 + chr2R_5_14510001 chr2R_14510001 RAL-443 1134 chr2R 14524841 14524876 chr2R 14524958 14524963 5 105 3.5 0.5 2.0 1.7 122 chr2R 14524841 intergenic not near genes chr2R 14524902 intergenic not near genes chr2R 14524963 intergenic not near genes chr2R_5_14520001 chr2R_14520001 RAL-443 1135 chr2R 14530749 14530762 chr2R 14530848 14530861 5 94 3.0 4.5 3.8 1.0 112 chr2R 14530749 intron ttv + chr2R 14530805 intron ttv + chr2R 14530861 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-443 1136 chr2R 14565540 14565583 chr2R 14565637 14565680 16 95 10.0 6.0 8.0 1.8 140 chr2R 14565540 intron ttv + chr2R 14565610 intron ttv + chr2R 14565680 intron ttv + chr2R_16_14565001 chr2R_14565001 RAL-443 1137 chr2R 14566425 14566472 chr2R 14566532 14566579 19 106 6.5 3.0 4.8 3.3 154 chr2R 14566425 intron ttv + chr2R 14566502 intron ttv + chr2R 14566579 intron ttv + chr2R_19_14565001 chr2R_14565001 RAL-443 1138 chr2R 14623875 14623900 chr2R 14623964 14624005 9 109 0.5 2.0 1.2 4.1 130 chr2R 14623875 intron Uhg5 + chr2R 14623940 5` UTR Uhg5 + chr2R 14624005 intron Uhg5 + chr2R_9_14620001 chr2R_14620001 RAL-443 1139 chr2R 14707046 14707065 chr2R 14707146 14707165 7 98 9.5 4.5 7.0 0.9 119 chr2R 14707046 intron mspo - chr2R 14707106 intron mspo - chr2R 14707165 intron mspo - chr2R_7_14705001 chr2R_14705001 RAL-443 1140 chr2R 14707073 14707094 chr2R 14707145 14707194 8 92 6.0 4.5 5.2 1.3 121 chr2R 14707073 intron mspo - chr2R 14707134 intron mspo - chr2R 14707194 intron mspo - chr2R_8_14705001 chr2R_14705001 RAL-443 1141 chr2R 14728193 14728247 chr2R 14728296 14728350 18 102 3.5 3.5 3.5 4.0 157 chr2R 14728193 intergenic not near genes chr2R 14728272 intergenic not near genes chr2R 14728350 intergenic not near genes chr2R_18_14725001 chr2R_14725001 RAL-443 1142 chr2R 14733200 14733240 chr2R 14733303 14733343 7 101 1.5 2.0 1.8 2.5 143 chr2R 14733200 intergenic not near genes chr2R 14733272 intergenic not near genes chr2R 14733343 intergenic not near genes chr2R_7_14730001 chr2R_14730001 RAL-443 1143 chr2R 14796334 14796359 chr2R 14796449 14796466 5 108 5.0 11.5 8.2 0.5 132 chr2R 14796334 intron kn - chr2R 14796400 intron kn - chr2R 14796466 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-443 1144 chr2R 14816098 14816134 chr2R 14816208 14816214 6 105 5.5 5.0 5.2 1.0 116 chr2R 14816098 intergenic not near genes chr2R 14816156 intergenic not near genes chr2R 14816214 intergenic not near genes chr2R_6_14815001 chr2R_14815001 RAL-443 1145 chr2R 14826379 14826396 chr2R 14826503 14826520 5 124 1.5 0.0 0.8 2.8 141 chr2R 14826379 intergenic not near genes chr2R 14826450 intergenic not near genes chr2R 14826520 intergenic not near genes chr2R_5_14825001 chr2R_14825001 RAL-443 1146 chr2R 14889199 14889239 chr2R 14897819 14897835 Max-element 12 8616 8.5 2.0 5.2 1.9 8636 chr2R 14889199 intergenic Cyp6a8 - chr2R 14893517 intergenic not near genes chr2R 14897835 intergenic not near genes chr2R_12_14890001 chr2R_14890001 RAL-443 1147 chr2R 14911680 14911720 chr2R 14911823 14911856 20 142 4.0 4.5 4.2 3.8 176 chr2R 14911680 intron CG10249 - chr2R 14911768 intron CG10249 - chr2R 14911856 intron CG10249 - chr2R_20_14910001 chr2R_14910001 RAL-443 1148 chr2R 14919137 14919175 chr2R 14919266 14919304 7 129 5.0 3.0 4.0 1.4 167 chr2R 14919137 intron CG10249 - chr2R 14919220 intron CG10249 - chr2R 14919304 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-443 1149 chr2R 14922121 14922170 chr2R 14922217 14922246 11 87 7.5 6.0 6.8 1.4 125 chr2R 14922121 intron CG10249 - chr2R 14922184 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_11_14920001 chr2R_14920001 RAL-443 1150 chr2R 14934440 14934456 chr2R 14934544 14934544 11 105 11.0 0.0 5.5 1.7 104 chr2R 14934440 intron CG10253 - chr2R 14934492 intron CG10253 - chr2R 14934544 intron CG10253 - chr2R_11_14930001 chr2R_14930001 RAL-443 1151 chr2R 14997340 14997370 chr2R 14997844 14997879 5 506 2.0 1.5 1.8 1.8 539 chr2R 14997340 intergenic not near genes chr2R 14997610 intergenic not near genes chr2R 14997879 intergenic not near genes chr2R_5_14995001 chr2R_14995001 RAL-443 1152 chr2R 14998504 14998512 chr2R 14998664 14998672 6 160 2.0 8.0 5.0 1.0 168 chr2R 14998504 intergenic not near genes chr2R 14998588 intergenic not near genes chr2R 14998672 intergenic not near genes chr2R_6_14995001 chr2R_14995001 RAL-443 1153 chr2R 15004707 15004755 chr2R 15005056 15005104 jockey 26 347 7.0 4.0 5.5 4.0 397 chr2R 15004707 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005104 intergenic not near genes chr2R_26_15000001 chr2R_15000001 RAL-443 1154 chr2R 15015464 15015489 chr2R 15022888 15022933 mdg1 13 7435 5.0 5.5 5.2 2.1 7469 chr2R 15015464 intron hbs + chr2R 15019198 intron hbs + chr2R 15022933 intron hbs + chr2R_13_15015001 chr2R_15015001 RAL-443 1155 chr2R 15084957 15085001 chr2R 15092026 15092070 297 18 7066 5.5 6.5 6.0 2.6 7113 chr2R 15084957 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092070 5` UTR CR44457 + chr2R_18_15085001 chr2R_15085001 RAL-443 1156 chr2R 15094875 15094905 chr2R 15094967 15095002 21 95 5.5 7.5 6.5 2.8 127 chr2R 15094875 intergenic not near genes chr2R 15094938 intergenic not near genes chr2R 15095002 intergenic not near genes chr2R_21_15090001 chr2R_15090001 RAL-443 1157 chr2R 15119304 15119345 chr2R 15127805 15127846 Tirant 12 8494 4.5 3.5 4.0 2.4 8542 chr2R 15119304 intron chn + chr2R 15123575 intron chn + chr2R 15127846 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-443 1158 chr2R 15133464 15133510 chr2R 15133563 15133569 9 95 5.5 4.0 4.8 1.6 105 chr2R 15133464 intron chn + chr2R 15133516 intron chn + chr2R 15133569 intron chn + chr2R_9_15130001 chr2R_15130001 RAL-443 1159 chr2R 15137949 15138000 chr2R 15138049 15138062 16 94 4.0 0.0 2.0 5.3 113 chr2R 15137949 intron chn + chr2R 15138006 intron chn + chr2R 15138062 intron chn + chr2R_16_15135001 chr2R_15135001 RAL-443 1160 chr2R 15144790 15144839 chr2R 15144940 15144989 11 147 4.5 4.5 4.5 2.0 199 chr2R 15144790 intergenic chn +,Rpb12 - chr2R 15144890 intergenic Rpb12 -,chn + chr2R 15144989 3` UTR Rpb12 - chr2R_11_15140001 chr2R_15140001 RAL-443 1161 chr2R 15196072 15196127 chr2R 15196187 15196218 12 105 5.0 3.5 4.2 2.3 146 chr2R 15196072 intergenic not near genes chr2R 15196145 intergenic not near genes chr2R 15196218 intergenic not near genes chr2R_12_15195001 chr2R_15195001 RAL-443 1162 chr2R 15201219 15201262 chr2R 15201330 15201373 21 109 5.0 7.0 6.0 3.0 154 chr2R 15201219 intergenic GPHR -,CG11807 + chr2R 15201296 5` UTR CG11807 + chr2R 15201373 5` UTR CG11807 + chr2R_21_15200001 chr2R_15200001 RAL-443 1163 chr2R 15330185 15330240 chr2R 15330339 15330393 9 154 3.5 1.0 2.2 2.8 208 chr2R 15330185 intergenic CR44371 - chr2R 15330289 intergenic CR44371 - chr2R 15330393 intergenic CR44371 - chr2R_9_15330001 chr2R_15330001 RAL-443 1164 chr2R 15373395 15373430 chr2R 15373776 15373816 14 384 3.0 4.5 3.8 2.9 421 chr2R 15373395 intergenic not near genes chr2R 15373606 intergenic not near genes chr2R 15373816 intergenic not near genes chr2R_14_15370001 chr2R_15370001 RAL-443 1165 chr2R 15412172 15412230 chr2R 15412348 15412351 13 161 3.0 2.0 2.5 3.7 179 chr2R 15412172 intron CG43729 + chr2R 15412262 intron CG43729 + chr2R 15412351 intron CG43729 + chr2R_13_15410001 chr2R_15410001 RAL-443 1166 chr2R 15472024 15472058 chr2R 15472114 15472161 6 101 0.5 3.0 1.8 2.1 137 chr2R 15472024 intergenic CG43729 +,CG8180 - chr2R 15472092 intergenic CG8180 -,CG43729 + chr2R 15472161 intergenic CG8180 -,CG43729 + chr2R_6_15470001 chr2R_15470001 RAL-443 1167 chr2R 15498140 15498189 chr2R 15498242 15498293 15 100 2.0 4.0 3.0 3.8 153 chr2R 15498140 intergenic not near genes chr2R 15498216 intergenic not near genes chr2R 15498293 intergenic not near genes chr2R_15_15495001 chr2R_15495001 RAL-443 1168 chr2R 15537690 15537736 chr2R 15537792 15537838 18 100 6.0 9.0 7.5 2.1 148 chr2R 15537690 3` UTR CG30471 + chr2R 15537764 3` UTR CG30471 + chr2R 15537838 intergenic CG30471 +,CG30467 + chr2R_18_15535001 chr2R_15535001 RAL-443 1169 chr2R 15679086 15679130 chr2R 15679190 15679234 18 103 5.5 4.5 5.0 3.0 148 chr2R 15679086 intergenic CG8207 -,Vha14-1 - chr2R 15679160 intergenic CG8207 -,Vha14-1 - chr2R 15679234 intergenic Vha14-1 -,CG8207 - chr2R_18_15675001 chr2R_15675001 RAL-443 1170 chr2R 15685488 15685537 chr2R 15685716 15685765 20 222 3.5 2.5 3.0 5.0 277 chr2R 15685488 intron,intron Ranbp11 +,CG30082 - chr2R 15685626 intron,exon Ranbp11 +,CG30082 - chr2R 15685765 intron,exon Ranbp11 +,CG30082 - chr2R_20_15685001 chr2R_15685001 RAL-443 1171 chr2R 15697876 15697907 chr2R 15697977 15698005 10 100 3.5 0.5 2.0 3.3 129 chr2R 15697876 exon CG33462 + chr2R 15697940 3` UTR CG33462 + chr2R 15698005 3` UTR CG33462 + chr2R_10_15695001 chr2R_15695001 RAL-443 1172 chr2R 15794860 15794892 chr2R 15794960 15794985 11 106 0.5 0.0 0.2 9.2 125 chr2R 15794860 intron,5` UTR Zasp52 -,tun + chr2R 15794922 intron,5` UTR Zasp52 -,tun + chr2R 15794985 intron,intron Zasp52 -,tun + chr2R_11_15790001 chr2R_15790001 RAL-443 1173 chr2R 15888110 15888152 chr2R 15888214 15888257 12 105 2.5 3.5 3.0 3.0 147 chr2R 15888110 intron sli - chr2R 15888184 intron sli - chr2R 15888257 intron sli - chr2R_12_15885001 chr2R_15885001 RAL-443 1174 chr2R 15891797 15891836 chr2R 15891893 15891932 10 96 5.0 9.0 7.0 1.2 135 chr2R 15891797 intron sli - chr2R 15891864 intron sli - chr2R 15891932 intron sli - chr2R_10_15890001 chr2R_15890001 RAL-443 1175 chr2R 15930360 15930374 chr2R 15930457 15930463 6 96 4.0 0.0 2.0 2.0 103 chr2R 15930360 intron bdg - chr2R 15930412 intron bdg - chr2R 15930463 intron bdg - chr2R_6_15930001 chr2R_15930001 RAL-443 1176 chr2R 16079051 16079096 chr2R 16079265 16079313 21 206 5.5 2.5 4.0 4.2 262 chr2R 16079051 intergenic CR43415 - chr2R 16079182 intergenic CR43415 - chr2R 16079313 intergenic CR43415 - chr2R_21_16075001 chr2R_16075001 RAL-443 1177 chr2R 16139191 16139220 chr2R 16139362 16139389 10 170 4.0 0.0 2.0 3.3 198 chr2R 16139191 intron Got1 + chr2R 16139290 intron Got1 + chr2R 16139389 intron Got1 + chr2R_10_16135001 chr2R_16135001 RAL-443 1178 chr2R 16245407 16245430 chr2R 16245515 16245544 10 113 1.0 12.5 6.8 1.3 137 chr2R 16245407 intron CngA - chr2R 16245476 intron CngA - chr2R 16245544 intron CngA - chr2R_10_16245001 chr2R_16245001 RAL-443 1179 chr2R 16352850 16352869 chr2R 16352953 16352972 9 102 9.0 5.0 7.0 1.1 122 chr2R 16352850 intergenic not near genes chr2R 16352911 intergenic not near genes chr2R 16352972 intergenic not near genes chr2R_9_16350001 chr2R_16350001 RAL-443 1180 chr2R 16480739 16480780 chr2R 16480824 16480851 13 90 1.5 4.5 3.0 3.2 112 chr2R 16480739 intergenic not near genes chr2R 16480795 intergenic not near genes chr2R 16480851 intergenic not near genes chr2R_13_16480001 chr2R_16480001 RAL-443 1181 chr2R 16503854 16503903 chr2R 16503963 16504013 33 103 3.5 4.0 3.8 6.9 159 chr2R 16503854 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16504013 intron Sema-2a + chr2R_33_16500001 chr2R_16500001 RAL-443 1182 chr2R 16536969 16536997 chr2R 16537128 16537156 9 159 0.0 6.0 3.0 2.2 187 chr2R 16536969 3` UTR loopin-1 + chr2R 16537062 3` UTR loopin-1 + chr2R 16537156 intergenic loopin-1 + chr2R_9_16535001 chr2R_16535001 RAL-443 1183 chr2R 16539623 16539651 chr2R 16544852 16544880 copia 12 5228 7.5 8.0 7.8 1.4 5257 chr2R 16539623 intergenic not near genes chr2R 16542252 intergenic not near genes chr2R 16544880 intergenic not near genes chr2R_12_16540001 chr2R_16540001 RAL-443 1184 chr2R 16539652 16539664 chr2R 16544845 16544893 copia 7 5219 6.0 7.5 6.8 0.9 5241 chr2R 16539652 intergenic not near genes chr2R 16542272 intergenic not near genes chr2R 16544893 intergenic not near genes chr2R_7_16540001 chr2R_16540001 RAL-443 1185 chr2R 16546979 16547028 chr2R 16547079 16547086 6 81 0.0 0.5 0.2 5.0 107 chr2R 16546979 intergenic not near genes chr2R 16547032 intergenic not near genes chr2R 16547086 intergenic not near genes chr2R_6_16545001 chr2R_16545001 RAL-443 1186 chr2R 16571853 16571906 chr2R 16571968 16572021 19 114 5.0 7.5 6.2 2.6 168 chr2R 16571853 intergenic CG4927 + chr2R 16571937 intergenic CG4927 + chr2R 16572021 intergenic CG4927 + chr2R_19_16570001 chr2R_16570001 RAL-443 1187 chr2R 16732613 16732623 chr2R 16732720 16732730 4 107 9.5 6.5 8.0 0.4 117 chr2R 16732613 5` UTR CG30463 - chr2R 16732672 5` UTR CG30463 - chr2R 16732730 5` UTR CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-443 1188 chr2R 16732624 16732653 chr2R 16732711 16732749 12 98 2.5 5.5 4.0 2.4 125 chr2R 16732624 5` UTR CG30463 - chr2R 16732686 5` UTR CG30463 - chr2R 16732749 5` UTR CG30463 - chr2R_12_16730001 chr2R_16730001 RAL-443 1189 chr2R 16740867 16740921 chr2R 16740981 16741033 5 103 1.5 4.5 3.0 1.2 166 chr2R 16740867 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16741033 intergenic not near genes chr2R_5_16740001 chr2R_16740001 RAL-443 1190 chr2R 16775641 16775675 chr2R 16775928 16775952 20 284 2.5 8.0 5.2 3.2 311 chr2R 16775641 3` UTR Arp53D + chr2R 16775796 intergenic Arp53D + chr2R 16775952 intergenic Arp53D + chr2R_20_16775001 chr2R_16775001 RAL-443 1191 chr2R 16893766 16893790 chr2R 16893869 16893892 6 103 6.5 7.5 7.0 0.8 126 chr2R 16893766 intron CG8910 - chr2R 16893829 intron CG8910 - chr2R 16893892 intron CG8910 - chr2R_6_16890001 chr2R_16890001 RAL-443 1192 chr2R 16893795 16893803 chr2R 16893861 16893901 7 91 5.0 7.5 6.2 1.0 106 chr2R 16893795 intron CG8910 - chr2R 16893848 intron CG8910 - chr2R 16893901 intron CG8910 - chr2R_7_16890001 chr2R_16890001 RAL-443 1193 chr2R 17147239 17147267 chr2R 17152275 17152318 jockey 17 5047 3.5 6.5 5.0 2.8 5079 chr2R 17147239 intergenic not near genes chr2R 17149778 intergenic not near genes chr2R 17152318 intergenic not near genes chr2R_17_17145001 chr2R_17145001 RAL-443 1194 chr2R 17161343 17161353 chr2R 17161570 17161570 4 224 5.5 0.0 2.8 1.1 227 chr2R 17161343 intergenic not near genes chr2R 17161456 intergenic not near genes chr2R 17161570 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-443 1195 chr2R 17176358 17176366 chr2R 17182568 17182576 diver 4 6210 1.0 12.5 6.8 0.5 6218 chr2R 17176358 intergenic not near genes chr2R 17179467 intergenic not near genes chr2R 17182576 intergenic not near genes chr2R_4_17175001 chr2R_17175001 RAL-443 1196 chr2R 17176368 17176386 chr2R 17182566 17182585 diver 8 6207 1.0 11.5 6.2 1.1 6217 chr2R 17176368 intergenic not near genes chr2R 17179476 intergenic not near genes chr2R 17182585 intergenic not near genes chr2R_8_17175001 chr2R_17175001 RAL-443 1197 chr2R 17221676 17221700 chr2R 17221777 17221807 7 104 6.5 7.5 7.0 0.9 131 chr2R 17221676 intron mbl + chr2R 17221742 intron mbl + chr2R 17221807 intron mbl + chr2R_7_17220001 chr2R_17220001 RAL-443 1198 chr2R 17225280 17225303 chr2R 17225379 17225388 7 94 5.5 4.5 5.0 1.2 108 chr2R 17225280 intron mbl + chr2R 17225334 intron mbl + chr2R 17225388 intron mbl + chr2R_7_17225001 chr2R_17225001 RAL-443 1199 chr2R 17236496 17236530 chr2R 17241715 17241727 copia 11 5218 4.5 4.0 4.2 2.1 5231 chr2R 17236496 intron mbl + chr2R 17239112 intron mbl + chr2R 17241727 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-443 1200 chr2R 17395263 17395308 chr2R 17395361 17395406 13 97 8.5 9.0 8.8 1.3 143 chr2R 17395263 intron Sip1 + chr2R 17395334 intron Sip1 + chr2R 17395406 intron Sip1 + chr2R_13_17395001 chr2R_17395001 RAL-443 1201 chr2R 17458988 17459037 chr2R 17459093 17459095 17 100 2.5 7.0 4.8 2.9 107 chr2R 17458988 intron CG14478 + chr2R 17459042 intron CG14478 + chr2R 17459095 intron CG14478 + chr2R_17_17455001 chr2R_17455001 RAL-443 1202 chr2R 17485907 17485950 chr2R 17490692 17490738 F-element 13 4786 9.0 5.0 7.0 1.6 4831 chr2R 17485907 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488322 intron NT5E-2 + chr2R 17490738 intron NT5E-2 + chr2R_13_17485001 chr2R_17485001 RAL-443 1203 chr2R 17543919 17543961 chr2R 17546423 17546472 15 2513 18.5 33.0 25.8 0.6 2553 chr2R 17543919 exon CG43370 + chr2R 17545196 intergenic cyp33 +,CG34194 + chr2R 17546472 exon RpL18A - chr2R_15_17545001 chr2R_17545001 RAL-443 1204 chr2R 17637810 17637842 chr2R 17637910 17637927 14 99 6.5 2.5 4.5 2.5 117 chr2R 17637810 intron CG10936 - chr2R 17637868 intron CG10936 - chr2R 17637927 intron CG10936 - chr2R_14_17635001 chr2R_17635001 RAL-443 1205 chr2R 17643616 17643667 chr2R 17644031 17644075 7 409 4.5 2.5 3.5 1.6 459 chr2R 17643616 intergenic not near genes chr2R 17643846 intergenic not near genes chr2R 17644075 intergenic not near genes chr2R_7_17640001 chr2R_17640001 RAL-443 1206 chr2R 17661530 17661583 chr2R 17661630 17661668 18 91 3.5 7.0 5.2 2.9 138 chr2R 17661530 intron CCHa1-R - chr2R 17661599 intron CCHa1-R - chr2R 17661668 intron CCHa1-R - chr2R_18_17660001 chr2R_17660001 RAL-443 1207 chr2R 17703634 17703661 chr2R 17703717 17703722 7 90 2.5 6.5 4.5 1.3 88 chr2R 17703634 3` UTR CG6424 - chr2R 17703678 3` UTR CG6424 - chr2R 17703722 3` UTR CG6424 - chr2R_7_17700001 chr2R_17700001 RAL-443 1208 chr2R 17708376 17708423 chr2R 17708477 17708524 18 100 5.0 7.0 6.0 2.6 148 chr2R 17708376 intron CG6424 - chr2R 17708450 intron CG6424 - chr2R 17708524 intron CG6424 - chr2R_18_17705001 chr2R_17705001 RAL-443 1209 chr2R 17709976 17710113 chr2R 17710087 17710180 14 96 2.0 2.0 2.0 4.7 204 chr2R 17709976 intron CG6424 - chr2R 17710078 intron CG6424 - chr2R 17710180 intron CG6424 - chr2R_14_17710001 chr2R_17710001 RAL-443 1210 chr2R 17782345 17782374 chr2R 17783568 17783597 pogo 8 1222 8.0 4.0 6.0 1.1 1252 chr2R 17782345 intergenic CG33981 -,fab1 - chr2R 17782971 intergenic not near genes chr2R 17783597 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-443 1211 chr2R 17782375 17782391 chr2R 17783566 17783612 pogo 11 1216 4.5 4.0 4.2 2.1 1237 chr2R 17782375 intergenic CG33981 -,fab1 - chr2R 17782994 intergenic not near genes chr2R 17783612 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-443 1212 chr2R 17784007 17784049 chr2R 17784268 17784302 pogo 9 255 6.5 2.5 4.5 1.6 295 chr2R 17784007 intergenic mir-31a - chr2R 17784154 intergenic mir-31a - chr2R 17784302 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-443 1213 chr2R 17785070 17785102 chr2R 17785178 17785203 10 103 3.0 7.0 5.0 1.7 133 chr2R 17785070 intergenic not near genes chr2R 17785136 intergenic not near genes chr2R 17785203 intergenic not near genes chr2R_10_17785001 chr2R_17785001 RAL-443 1214 chr2R 17828556 17828576 chr2R 17828659 17828669 9 101 2.0 2.0 2.0 3.0 113 chr2R 17828556 intron grh + chr2R 17828612 intron grh + chr2R 17828669 intron grh + chr2R_9_17825001 chr2R_17825001 RAL-443 1215 chr2R 17833618 17833670 chr2R 17833722 17833748 9 95 2.5 2.0 2.2 2.8 130 chr2R 17833618 intron grh + chr2R 17833683 intron grh + chr2R 17833748 intron grh + chr2R_9_17830001 chr2R_17830001 RAL-443 1216 chr2R 17960151 17960174 chr2R 17960256 17960279 14 102 3.5 7.5 5.5 2.2 128 chr2R 17960151 intergenic not near genes chr2R 17960215 intergenic not near genes chr2R 17960279 intergenic not near genes chr2R_14_17960001 chr2R_17960001 RAL-443 1217 chr2R 17970242 17970293 chr2R 17970351 17970402 14 112 32.5 30.0 31.2 0.4 160 chr2R 17970242 intergenic not near genes chr2R 17970322 intergenic not near genes chr2R 17970402 intergenic not near genes chr2R_14_17970001 chr2R_17970001 RAL-443 1218 chr2R 17982924 17982952 chr2R 17983013 17983057 10 99 5.0 3.5 4.2 1.9 133 chr2R 17982924 intron dpr13 - chr2R 17982990 intron dpr13 - chr2R 17983057 intron dpr13 - chr2R_10_17980001 chr2R_17980001 RAL-443 1219 chr2R 18045653 18045661 chr2R 18046025 18046033 jockey 5 372 11.0 5.5 8.2 0.5 380 chr2R 18045653 intergenic not near genes chr2R 18045843 intergenic not near genes chr2R 18046033 intergenic CG5767 - chr2R_5_18045001 chr2R_18045001 RAL-443 1220 chr2R 18045662 18045703 chr2R 18046024 18046075 jockey 19 369 4.5 5.5 5.0 3.2 413 chr2R 18045662 intergenic not near genes chr2R 18045868 intergenic not near genes chr2R 18046075 intergenic CG5767 - chr2R_19_18045001 chr2R_18045001 RAL-443 1221 chr2R 18074584 18074620 chr2R 18074679 18074716 9 94 6.5 5.5 6.0 1.3 132 chr2R 18074584 intron CG34386 + chr2R 18074650 intron CG34386 + chr2R 18074716 intron CG34386 + chr2R_9_18070001 chr2R_18070001 RAL-443 1222 chr2R 18111690 18111712 chr2R 18115578 18115595 F-element 12 3886 2.0 0.5 1.2 5.5 3905 chr2R 18111690 intergenic not near genes chr2R 18113642 intergenic not near genes chr2R 18115595 intergenic not near genes chr2R_12_18110001 chr2R_18110001 RAL-443 1223 chr2R 18124318 18124368 chr2R 18124415 18124455 21 92 7.0 5.5 6.2 2.9 137 chr2R 18124318 intron stau - chr2R 18124386 intron stau - chr2R 18124455 intron stau - chr2R_21_18120001 chr2R_18120001 RAL-443 1224 chr2R 18207448 18207496 chr2R 18207559 18207607 17 109 2.5 4.5 3.5 3.8 159 chr2R 18207448 intergenic CG30114 + chr2R 18207528 intergenic CG30114 + chr2R 18207607 intergenic CG30114 + chr2R_17_18205001 chr2R_18205001 RAL-443 1225 chr2R 18308267 18308311 chr2R 18308388 18308437 17 123 8.0 3.0 5.5 2.6 170 chr2R 18308267 intron sbb - chr2R 18308352 intron sbb - chr2R 18308437 intron sbb - chr2R_17_18305001 chr2R_18305001 RAL-443 1226 chr2R 18358384 18358418 chr2R 18372603 18372650 roo 15 14229 4.0 6.5 5.2 2.4 14266 chr2R 18358384 intergenic not near genes chr2R 18365517 intergenic not near genes chr2R 18372650 intergenic not near genes chr2R_15_18365001 chr2R_18365001 RAL-443 1227 chr2R 18398138 18398193 chr2R 18398253 18398307 26 108 4.5 6.0 5.2 4.2 169 chr2R 18398138 intron GstE10 - chr2R 18398222 intron GstE10 - chr2R 18398307 intron GstE10 - chr2R_26_18395001 chr2R_18395001 RAL-443 1228 chr2R 18405545 18405788 chr2R 18405683 18405882 14 116 3.0 2.0 2.5 4.0 337 chr2R 18405545 intergenic GstE5 +,GstE6 + chr2R 18405714 intergenic GstE6 +,GstE5 + chr2R 18405882 intergenic GstE6 + chr2R_14_18405001 chr2R_18405001 RAL-443 1229 chr2R 18433593 18433610 chr2R 18433768 18433787 5 175 8.5 5.5 7.0 0.6 194 chr2R 18433593 intron CG30118 - chr2R 18433690 intron CG30118 - chr2R 18433787 intron CG30118 - chr2R_5_18430001 chr2R_18430001 RAL-443 1230 chr2R 18433612 18433632 chr2R 18433762 18433802 9 167 5.0 4.5 4.8 1.6 190 chr2R 18433612 intron CG30118 - chr2R 18433707 intron CG30118 - chr2R 18433802 intron CG30118 - chr2R_9_18430001 chr2R_18430001 RAL-443 1231 chr2R 18487823 18487851 chr2R 18495290 18495341 blood 5 7480 1.0 4.5 2.8 1.3 7518 chr2R 18487823 intron CG30116 - chr2R 18491582 intron CG30116 - chr2R 18495341 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-443 1232 chr2R 18513421 18513470 chr2R 18513909 18513958 14 486 1.0 2.5 1.8 5.0 537 chr2R 18513421 intergenic not near genes chr2R 18513690 intergenic not near genes chr2R 18513958 intergenic not near genes chr2R_14_18510001 chr2R_18510001 RAL-443 1233 chr2R 18528174 18528218 chr2R 18528277 18528311 11 94 9.0 5.0 7.0 1.4 137 chr2R 18528174 intron CG10924 + chr2R 18528242 intron CG10924 + chr2R 18528311 intron CG10924 + chr2R_11_18525001 chr2R_18525001 RAL-443 1234 chr2R 18575804 18575819 chr2R 18581987 18582008 3S18 9 6191 2.0 3.5 2.8 2.4 6204 chr2R 18575804 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582008 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-443 1235 chr2R 18590851 18590901 chr2R 18600023 18600052 roo 5 9167 4.0 0.5 2.2 1.6 9201 chr2R 18590851 intron GEFmeso - chr2R 18595452 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-443 1236 chr2R 18646413 18646434 chr2R 18646578 18646599 8 162 6.0 10.5 8.2 0.9 186 chr2R 18646413 intron SP2637 - chr2R 18646506 intron SP2637 - chr2R 18646599 intron SP2637 - chr2R_8_18645001 chr2R_18645001 RAL-443 1237 chr2R 18692880 18692914 chr2R 18692987 18693021 18 104 6.0 4.0 5.0 3.0 141 chr2R 18692880 intron Sik3 + chr2R 18692950 intron Sik3 + chr2R 18693021 intron Sik3 + chr2R_18_18690001 chr2R_18690001 RAL-443 1238 chr2R 18736768 18736781 chr2R 18736913 18736926 7 144 14.5 4.0 9.2 0.7 158 chr2R 18736768 intron Hs3st-A + chr2R 18736847 intron Hs3st-A + chr2R 18736926 intron Hs3st-A + chr2R_7_18735001 chr2R_18735001 RAL-443 1239 chr2R 18738186 18738238 chr2R 18738282 18738334 24 93 3.0 5.5 4.2 4.6 148 chr2R 18738186 intron Hs3st-A + chr2R 18738260 intron Hs3st-A + chr2R 18738334 intron Hs3st-A + chr2R_24_18735001 chr2R_18735001 RAL-443 1240 chr2R 18862291 18862409 chr2R 18862398 18862515 13 117 0.0 0.0 0.0 13.0 224 chr2R 18862291 intergenic Jheh3 - chr2R 18862403 intergenic Jheh3 -,CG43069 + chr2R 18862515 intergenic CG43069 +,Jheh3 - chr2R_13_18860001 chr2R_18860001 RAL-443 1241 chr2R 18871626 18871679 chr2R 18871731 18871777 10 101 5.5 2.0 3.8 2.1 151 chr2R 18871626 intergenic not near genes chr2R 18871702 intergenic not near genes chr2R 18871777 intergenic not near genes chr2R_10_18870001 chr2R_18870001 RAL-443 1242 chr2R 18953149 18953186 chr2R 18953249 18953286 9 102 5.5 4.0 4.8 1.6 137 chr2R 18953149 intron sano + chr2R 18953218 intron sano + chr2R 18953286 intron sano + chr2R_9_18950001 chr2R_18950001 RAL-443 1243 chr2R 18992002 18992049 chr2R 18992160 18992210 19 158 2.5 4.5 3.5 4.2 208 chr2R 18992002 intron tn + chr2R 18992106 intron tn + chr2R 18992210 intron tn + chr2R_19_18990001 chr2R_18990001 RAL-443 1244 chr2R 19026031 19026057 chr2R 19026191 19026217 12 158 7.0 1.5 4.2 2.3 186 chr2R 19026031 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026217 intron 5-HT1B - chr2R_12_19025001 chr2R_19025001 RAL-443 1245 chr2R 19040705 19040757 chr2R 19040805 19040857 19 99 1.0 5.5 3.2 4.5 152 chr2R 19040705 intergenic not near genes chr2R 19040781 intergenic not near genes chr2R 19040857 intergenic not near genes chr2R_19_19040001 chr2R_19040001 RAL-443 1246 chr2R 19116794 19116845 chr2R 19116910 19116961 21 111 4.5 6.0 5.2 3.4 167 chr2R 19116794 intron 5-HT1A + chr2R 19116878 intron 5-HT1A + chr2R 19116961 intron 5-HT1A + chr2R_21_19115001 chr2R_19115001 RAL-443 1247 chr2R 19171359 19171391 chr2R 19171575 19171602 14 216 4.0 4.0 4.0 2.8 243 chr2R 19171359 exon CG10737 + chr2R 19171480 intron CG10737 + chr2R 19171602 intron CG10737 + chr2R_14_19170001 chr2R_19170001 RAL-443 1248 chr2R 19186128 19186160 chr2R 19186229 19186231 7 88 3.0 0.0 1.5 2.8 103 chr2R 19186128 intron hppy + chr2R 19186180 intron hppy + chr2R 19186231 intron hppy + chr2R_7_19185001 chr2R_19185001 RAL-443 1249 chr2R 19199014 19199052 chr2R 19199136 19199174 10 121 4.0 4.0 4.0 2.0 160 chr2R 19199014 intron hppy + chr2R 19199094 intron hppy + chr2R 19199174 intron hppy + chr2R_10_19195001 chr2R_19195001 RAL-443 1250 chr2R 19205327 19205358 chr2R 19205675 19205678 4 341 2.5 0.0 1.2 1.8 351 chr2R 19205327 intron hppy + chr2R 19205502 intron hppy + chr2R 19205678 intron hppy + chr2R_4_19205001 chr2R_19205001 RAL-443 1251 chr2R 19244462 19244468 chr2R 19244561 19244567 7 99 0.0 9.5 4.8 1.2 105 chr2R 19244462 intergenic not near genes chr2R 19244514 intergenic not near genes chr2R 19244567 intergenic not near genes chr2R_7_19240001 chr2R_19240001 RAL-443 1252 chr2R 19300954 19300995 chr2R 19301045 19301093 12 101 1.5 3.5 2.5 3.4 139 chr2R 19300954 intron Tab2 + chr2R 19301024 intron Tab2 + chr2R 19301093 intron Tab2 + chr2R_12_19300001 chr2R_19300001 RAL-443 1253 chr2R 19385261 19385309 chr2R 19385564 19385570 15 300 4.5 3.5 4.0 3.0 309 chr2R 19385261 intergenic CG10073 + chr2R 19385416 intergenic CG10073 + chr2R 19385570 intergenic CG10081 + chr2R_15_19385001 chr2R_19385001 RAL-443 1254 chr2R 19505276 19505284 chr2R 19505380 19505410 7 120 1.0 2.0 1.5 2.8 134 chr2R 19505276 5` UTR CR44472 + chr2R 19505343 5` UTR CR44472 + chr2R 19505410 5` UTR CR44472 + chr2R_7_19505001 chr2R_19505001 RAL-443 1255 chr2R 6729398 6729398 chr2R 19505444 19505449 5 12776047 25.0 2.0 13.5 0.3 12776051 chr2R 6729398 intron l(2)01289 - chr2R 13117424 intron CG13325 + chr2R 19505449 5` UTR CR44472 + chr2R_5_13115001 chr2R_13115001 RAL-443 1256 chr2R 19532699 19532743 chr2R 19532801 19532845 8 99 4.0 4.0 4.0 1.6 146 chr2R 19532699 exon sm - chr2R 19532772 intron sm - chr2R 19532845 intron sm - chr2R_8_19530001 chr2R_19530001 RAL-443 1257 chr2R 19536451 19536500 chr2R 19536553 19536602 19 100 4.5 5.5 5.0 3.2 151 chr2R 19536451 intron sm - chr2R 19536526 intron sm - chr2R 19536602 intron sm - chr2R_19_19535001 chr2R_19535001 RAL-443 1258 chr2R 19773994 19774039 chr2R 19774126 19774137 17 127 5.5 5.0 5.2 2.7 143 chr2R 19773994 intergenic not near genes chr2R 19774066 intergenic not near genes chr2R 19774137 intergenic not near genes chr2R_17_19770001 chr2R_19770001 RAL-443 1259 chr2R 19776577 19776619 chr2R 19779920 19779962 jockey 12 3343 4.5 9.0 6.8 1.5 3385 chr2R 19776577 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779962 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-443 1260 chr2R 19914833 19914870 chr2R 19922260 19922302 mdg1 11 7430 7.5 4.0 5.8 1.6 7469 chr2R 19914833 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922302 intergenic not near genes chr2R_11_19915001 chr2R_19915001 RAL-443 1261 chr2R 20057190 20057194 chr2R 20057308 20057312 5 118 7.0 4.0 5.5 0.8 122 chr2R 20057190 intergenic not near genes chr2R 20057251 intergenic not near genes chr2R 20057312 intergenic not near genes chr2R_5_20055001 chr2R_20055001 RAL-443 1262 chr2R 20069230 20069249 chr2R 20071873 20071909 opus 5 2644 0.5 2.5 1.5 2.0 2679 chr2R 20069230 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071909 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-443 1263 chr2R 20080605 20080619 chr2R 20080702 20080716 6 97 0.0 18.5 9.2 0.6 111 chr2R 20080605 intergenic not near genes chr2R 20080660 intergenic not near genes chr2R 20080716 intergenic not near genes chr2R_6_20080001 chr2R_20080001 RAL-443 1264 chr2R 20125726 20125741 chr2R 20125814 20125826 10 94 7.0 9.0 8.0 1.1 100 chr2R 20125726 intergenic not near genes chr2R 20125776 intergenic not near genes chr2R 20125826 intergenic not near genes chr2R_10_20125001 chr2R_20125001 RAL-443 1265 chr2R 20177397 20177414 chr2R 20177601 20177641 5 221 0.0 3.0 1.5 2.0 244 chr2R 20177397 intergenic not near genes chr2R 20177519 intergenic not near genes chr2R 20177641 intergenic not near genes chr2R_5_20175001 chr2R_20175001 RAL-443 1266 chr2R 20338741 20338784 chr2R 20338841 20338859 6 94 7.0 0.5 3.8 1.2 118 chr2R 20338741 intergenic not near genes chr2R 20338800 intergenic not near genes chr2R 20338859 intergenic not near genes chr2R_6_20335001 chr2R_20335001 RAL-443 1267 chr2R 20379138 20379148 chr2R 20379241 20379251 6 102 8.0 0.0 4.0 1.2 113 chr2R 20379138 intergenic not near genes chr2R 20379194 intergenic not near genes chr2R 20379251 intergenic not near genes chr2R_6_20375001 chr2R_20375001 RAL-443 1268 chr2R 20489888 20489918 chr2R 20490007 20490032 8 120 1.5 9.5 5.5 1.2 144 chr2R 20489888 intergenic not near genes chr2R 20489960 intergenic not near genes chr2R 20490032 intergenic not near genes chr2R_8_20485001 chr2R_20485001 RAL-443 1269 chr2R 20505345 20505389 chr2R 20505861 20505900 18 511 5.0 2.5 3.8 3.8 555 chr2R 20505345 exon Obp57a + chr2R 20505622 exon Obp57a + chr2R 20505900 3` UTR CR44644 - chr2R_18_20505001 chr2R_20505001 RAL-443 1270 chr2R 20510319 20510363 chr2R 20510663 20510707 14 344 3.5 5.0 4.2 2.7 388 chr2R 20510319 intergenic not near genes chr2R 20510513 intergenic not near genes chr2R 20510707 intergenic CR44648 + chr2R_14_20510001 chr2R_20510001 RAL-443 1271 chr2R 20523033 20523071 chr2R 20523149 20523202 7 121 2.0 5.5 3.8 1.5 169 chr2R 20523033 intergenic not near genes chr2R 20523118 intergenic not near genes chr2R 20523202 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-443 1272 chr2R 20577071 20577119 chr2R 20577174 20577192 15 99 0.0 1.5 0.8 8.3 121 chr2R 20577071 intron qsm - chr2R 20577132 intron qsm - chr2R 20577192 intron qsm - chr2R_15_20575001 chr2R_20575001 RAL-443 1273 chr2R 20708538 20708566 chr2R 20708635 20708663 7 97 9.0 4.5 6.8 0.9 125 chr2R 20708538 intron dpr + chr2R 20708600 intron dpr + chr2R 20708663 intron dpr + chr2R_7_20705001 chr2R_20705001 RAL-443 1274 chr2R 20739424 20739454 chr2R 20744212 20744242 F-element 13 4787 4.0 2.5 3.2 3.1 4818 chr2R 20739424 intron dpr + chr2R 20741833 intron dpr + chr2R 20744242 intron dpr + chr2R_13_20740001 chr2R_20740001 RAL-443 1275 chr2R 20739458 20739472 chr2R 20744210 20744260 F-element 4 4774 2.0 2.0 2.0 1.3 4802 chr2R 20739458 intron dpr + chr2R 20741859 intron dpr + chr2R 20744260 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-443 1276 chr2R 20760824 20760846 chr2R 20761116 20761120 8 290 2.0 0.0 1.0 4.0 296 chr2R 20760824 intergenic not near genes chr2R 20760972 intergenic not near genes chr2R 20761120 intergenic not near genes chr2R_8_20760001 chr2R_20760001 RAL-443 1277 chr2R 20760847 20760853 chr2R 20761105 20761138 4 276 1.5 0.0 0.8 2.2 291 chr2R 20760847 intergenic not near genes chr2R 20760992 intergenic not near genes chr2R 20761138 intergenic not near genes chr2R_4_20760001 chr2R_20760001 RAL-443 1278 chr2R 20783292 20783328 chr2R 20788084 20788120 F-element 9 4790 3.5 5.5 4.5 1.6 4828 chr2R 20783292 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788120 intergenic CG43666 - chr2R_9_20785001 chr2R_20785001 RAL-443 1279 chr2R 20800495 20800535 chr2R 20800642 20800682 7 147 3.5 1.0 2.2 2.2 187 chr2R 20800495 intergenic not near genes chr2R 20800588 intergenic not near genes chr2R 20800682 intergenic not near genes chr2R_7_20800001 chr2R_20800001 RAL-443 1280 chr2R 20824981 20824996 chr2R 20825082 20825097 7 101 4.5 2.0 3.2 1.7 116 chr2R 20824981 intron insc - chr2R 20825039 intron insc - chr2R 20825097 intron insc - chr2R_7_20825001 chr2R_20825001 RAL-443 1281 chr2R 20838060 20838082 chr2R 20838151 20838183 8 100 0.0 6.5 3.2 1.9 123 chr2R 20838060 intron CR44667 + chr2R 20838122 intron CR44667 + chr2R 20838183 intron CR44667 + chr2R_8_20835001 chr2R_20835001 RAL-443 1282 chr2R 20848916 20848962 chr2R 20849014 20849038 19 102 3.5 8.0 5.8 2.8 122 chr2R 20848916 exon CG17999 - chr2R 20848977 intron CG17999 - chr2R 20849038 intron CG17999 - chr2R_19_20845001 chr2R_20845001 RAL-443 1283 chr2R 20942356 20942375 chr2R 20942459 20942478 6 103 0.0 5.0 2.5 1.7 122 chr2R 20942356 intergenic not near genes chr2R 20942417 intergenic not near genes chr2R 20942478 intergenic not near genes chr2R_6_20940001 chr2R_20940001 RAL-443 1284 chr2R 20962887 20962939 chr2R 20963005 20963042 21 115 4.5 5.0 4.8 3.6 155 chr2R 20962887 intergenic not near genes chr2R 20962964 intergenic not near genes chr2R 20963042 intergenic not near genes chr2R_21_20960001 chr2R_20960001 RAL-443 1285 chr2R 20967006 20967054 chr2R 20967102 20967151 11 96 4.0 0.0 2.0 3.7 145 chr2R 20967006 intergenic not near genes chr2R 20967078 intergenic not near genes chr2R 20967151 intergenic not near genes chr2R_11_20965001 chr2R_20965001 RAL-443 1286 chr2R 21080288 21080293 chr2R 21080386 21080391 5 98 13.5 4.5 9.0 0.5 103 chr2R 21080288 intron Treh + chr2R 21080340 intron Treh + chr2R 21080391 intron Treh + chr2R_5_21080001 chr2R_21080001 RAL-443 1287 chr2R 21077723 21077740 chr2R 21082942 21082956 9 5216 22.5 44.5 33.5 0.3 5233 chr2R 21077723 intron Treh + chr2R 21080340 intron Treh + chr2R 21082956 intron Treh + chr2R_9_21080001 chr2R_21080001 RAL-443 1288 chr2R 21103519 21103552 chr2R 21103619 21103652 14 99 5.0 1.0 3.0 3.5 133 chr2R 21103519 intron ktub + chr2R 21103586 intron ktub + chr2R 21103652 intron ktub + chr2R_14_21100001 chr2R_21100001 RAL-443 1289 chr2R 21136892 21136940 chr2R 21136982 21137038 17 96 0.5 1.0 0.8 9.4 146 chr2R 21136892 intron Magi - chr2R 21136965 intron Magi - chr2R 21137038 intron Magi - chr2R_17_21135001 chr2R_21135001 RAL-443 1290 chr2R 21141000 21141151 chr2R 21141103 21141267 35 105 0.0 0.0 0.0 35.0 267 chr2R 21141000 intron Magi - chr2R 21141134 intron Magi - chr2R 21141267 intron Magi - chr2R_35_21140001 chr2R_21140001 RAL-443 1291 chr2R 21151098 21151138 chr2R 21153751 21153791 opus 20 2650 8.5 6.0 7.2 2.4 2693 chr2R 21151098 intron CG30389 - chr2R 21152444 intron CG30389 - chr2R 21153791 intron CG30389 - chr2R_20_21150001 chr2R_21150001 RAL-443 1292 chr2R 21188201 21188248 chr2R 21188302 21188338 8 100 3.5 3.0 3.2 1.9 137 chr2R 21188201 exon tud + chr2R 21188270 intron tud + chr2R 21188338 intron tud + chr2R_8_21185001 chr2R_21185001 RAL-443 1293 chr2R 21260055 21260077 chr2R 21260171 21260193 5 116 12.5 14.0 13.2 0.4 138 chr2R 21260055 intron Rgk3 + chr2R 21260124 intron Rgk3 + chr2R 21260193 intron Rgk3 + chr2R_5_21260001 chr2R_21260001 RAL-443 1294 chr2R 21298473 21298503 chr2R 21298556 21298590 9 93 1.0 2.5 1.8 3.2 117 chr2R 21298473 intron,3` UTR CG42672 +,CR44724 - chr2R 21298532 intron CG42672 + chr2R 21298590 intron CG42672 + chr2R_9_21295001 chr2R_21295001 RAL-443 1295 chr2R 21301236 21301284 chr2R 21301438 21301463 5 196 2.0 3.5 2.8 1.3 227 chr2R 21301236 intron CG42672 + chr2R 21301350 intron CG42672 + chr2R 21301463 intron CG42672 + chr2R_5_21300001 chr2R_21300001 RAL-443 1296 chr2R 21363140 21363182 chr2R 21363236 21363291 7 107 0.0 0.0 0.0 7.0 151 chr2R 21363140 intron cv-2 - chr2R 21363216 intron cv-2 - chr2R 21363291 intron cv-2 - chr2R_7_21360001 chr2R_21360001 RAL-443 1297 chr2R 21421324 21421353 chr2R 21421417 21421452 13 97 9.5 10.5 10.0 1.2 128 chr2R 21421324 intron Sdc - chr2R 21421388 intron Sdc - chr2R 21421452 intron Sdc - chr2R_13_21420001 chr2R_21420001 RAL-443 1298 chr2R 21432247 21432284 chr2R 21432366 21432395 7 106 4.5 2.5 3.5 1.6 148 chr2R 21432247 intron Sdc - chr2R 21432321 intron Sdc - chr2R 21432395 intron Sdc - chr2R_7_21430001 chr2R_21430001 RAL-443 1299 chr2R 21708219 21708251 chr2R 21709884 21709932 11 1678 20.5 16.5 18.5 0.6 1713 chr2R 21708219 intron HmgD + chr2R 21709076 intron,3` UTR HmgD +,CR44749 - chr2R 21709932 intron,3` UTR HmgD +,CG30403 - chr2R_11_21705001 chr2R_21705001 RAL-443 1300 chr2R 21708163 21708204 chr2R 21709945 21709999 15 1785 23.0 32.0 27.5 0.5 1836 chr2R 21708163 intron HmgD + chr2R 21709081 intron,3` UTR HmgD +,CR44749 - chr2R 21709999 intron,3` UTR HmgD +,CG30403 - chr2R_15_21705001 chr2R_21705001 RAL-443 1301 chr2R 21710934 21710968 chr2R 21711041 21711085 17 113 7.0 7.0 7.0 2.1 151 chr2R 21710934 intron,intron HmgD +,CG30403 - chr2R 21711010 intron,intron HmgD +,CG30403 - chr2R 21711085 intron,intron HmgD +,CG30403 - chr2R_17_21710001 chr2R_21710001 RAL-443 1302 chr2R 21721556 21721609 chr2R 21721664 21721716 8 100 3.5 0.0 1.8 2.9 160 chr2R 21721556 intron LBR + chr2R 21721636 intron LBR + chr2R 21721716 intron LBR + chr2R_8_21720001 chr2R_21720001 RAL-443 1303 chr2R 21738264 21738308 chr2R 21747444 21747458 roo 8 9156 2.0 1.5 1.8 2.9 9194 chr2R 21738264 intergenic not near genes chr2R 21742861 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_8_21740001 chr2R_21740001 RAL-443 1304 chr2R 21749653 21749695 chr2R 21749738 21749791 21 90 3.5 9.5 6.5 2.8 138 chr2R 21749653 intergenic not near genes chr2R 21749722 intergenic not near genes chr2R 21749791 intergenic not near genes chr2R_21_21745001 chr2R_21745001 RAL-443 1305 chr2R 21753070 21753114 chr2R 21753569 21753619 roo 17 501 6.0 9.0 7.5 2.0 549 chr2R 21753070 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753619 intergenic not near genes chr2R_17_21750001 chr2R_21750001 RAL-443 1306 chr2R 21809510 21809554 chr2R 21817770 21817783 roo 10 8254 6.5 5.5 6.0 1.4 8273 chr2R 21809510 intergenic not near genes chr2R 21813646 intergenic not near genes chr2R 21817783 intergenic not near genes chr2R_10_21810001 chr2R_21810001 RAL-443 1307 chr2R 21857330 21857367 chr2R 21857441 21857478 9 105 11.0 5.5 8.2 1.0 148 chr2R 21857330 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857478 intergenic not near genes chr2R_9_21855001 chr2R_21855001 RAL-443 1308 chr2R 21870946 21870965 chr2R 21871039 21871064 6 96 5.5 0.5 3.0 1.5 118 chr2R 21870946 intergenic not near genes chr2R 21871005 intergenic not near genes chr2R 21871064 intergenic not near genes chr2R_6_21870001 chr2R_21870001 RAL-443 1309 chr2R 21870967 21870971 chr2R 21871035 21871070 4 88 4.0 0.5 2.2 1.2 103 chr2R 21870967 intergenic not near genes chr2R 21871018 intergenic not near genes chr2R 21871070 intergenic not near genes chr2R_4_21870001 chr2R_21870001 RAL-443 1310 chr2R 21886110 21886159 chr2R 21886208 21886213 14 91 5.0 0.5 2.8 3.7 103 chr2R 21886110 intron Fili + chr2R 21886162 intron Fili + chr2R 21886213 intron Fili + chr2R_14_21885001 chr2R_21885001 RAL-443 1311 chr2R 21926957 21927006 chr2R 21927066 21927111 10 108 1.5 3.5 2.5 2.9 154 chr2R 21926957 intron Fili + chr2R 21927034 intron Fili + chr2R 21927111 intron Fili + chr2R_10_21925001 chr2R_21925001 RAL-443 1312 chr2R 21932256 21932275 chr2R 21932328 21932373 9 89 0.5 3.0 1.8 3.2 117 chr2R 21932256 intron Fili + chr2R 21932314 intron Fili + chr2R 21932373 intron Fili + chr2R_9_21930001 chr2R_21930001 RAL-443 1313 chr2R 21963178 21963207 chr2R 21963281 21963312 10 103 6.0 0.5 3.2 2.4 134 chr2R 21963178 intergenic not near genes chr2R 21963245 intergenic not near genes chr2R 21963312 intergenic not near genes chr2R_10_21960001 chr2R_21960001 RAL-443 1314 chr2R 21985522 21985559 chr2R 21985623 21985660 11 100 5.0 1.5 3.2 2.6 138 chr2R 21985522 intergenic CG30401 - chr2R 21985591 intergenic CG30401 - chr2R 21985660 3` UTR CG30401 - chr2R_11_21985001 chr2R_21985001 RAL-443 1315 chr2R 22004278 22004316 chr2R 22004391 22004430 14 113 3.5 2.5 3.0 3.5 152 chr2R 22004278 intron CG34370 - chr2R 22004354 intron CG34370 - chr2R 22004430 intron CG34370 - chr2R_14_22000001 chr2R_22000001 RAL-443 1316 chr2R 22027521 22027557 chr2R 22027623 22027661 4 103 0.0 0.0 0.0 4.0 140 chr2R 22027521 intron CG34370 - chr2R 22027591 intron CG34370 - chr2R 22027661 intron CG34370 - chr2R_4_22025001 chr2R_22025001 RAL-443 1317 chr2R 22040150 22040188 chr2R 22040234 22040288 5 85 1.5 1.0 1.2 2.3 138 chr2R 22040150 intergenic not near genes chr2R 22040219 intergenic not near genes chr2R 22040288 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-443 1318 chr2R 22072683 22072712 chr2R 22072776 22072792 9 98 7.0 7.0 7.0 1.1 109 chr2R 22072683 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072792 intron CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-443 1319 chr2R 22118173 22118216 chr2R 22118267 22118316 9 91 2.0 8.0 5.0 1.5 143 chr2R 22118173 intron Vrp1 - chr2R 22118244 intron Vrp1 - chr2R 22118316 intron Vrp1 - chr2R_9_22115001 chr2R_22115001 RAL-443 1320 chr2R 22132273 22132279 chr2R 22132373 22132379 5 100 8.0 5.0 6.5 0.7 106 chr2R 22132273 intergenic not near genes chr2R 22132326 intergenic not near genes chr2R 22132379 intergenic not near genes chr2R_5_22130001 chr2R_22130001 RAL-443 1321 chr2R 22179209 22179233 chr2R 22179336 22179360 7 127 0.0 3.5 1.8 2.5 151 chr2R 22179209 intron CG11170 - chr2R 22179284 intron CG11170 - chr2R 22179360 intron CG11170 - chr2R_7_22175001 chr2R_22175001 RAL-443 1322 chr2R 22185668 22185697 chr2R 22185787 22185796 8 115 2.0 1.0 1.5 3.2 128 chr2R 22185668 3` UTR MED16 + chr2R 22185732 3` UTR MED16 + chr2R 22185796 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-443 1323 chr2R 22205850 22205881 chr2R 22205962 22205993 11 111 3.5 4.0 3.8 2.3 143 chr2R 22205850 intergenic CG3290 -,CG3292 - chr2R 22205922 intergenic CG3290 -,CG3292 - chr2R 22205993 intergenic CG3290 -,CG3292 - chr2R_11_22205001 chr2R_22205001 RAL-443 1324 chr2R 22276881 22276885 chr2R 22277000 22277019 4 129 0.0 8.0 4.0 0.8 138 chr2R 22276881 intron dve + chr2R 22276950 intron dve + chr2R 22277019 intron dve + chr2R_4_22275001 chr2R_22275001 RAL-443 1325 chr2R 4825123 4825123 chr2R 22311216 22311217 5 17486093 18.5 18.5 18.5 0.3 17486094 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311217 intron wdp - chr2R_5_13565001 chr2R_13565001 RAL-443 1326 chr2R 22349677 22349718 chr2R 22351481 22351522 jockey 10 1799 3.5 6.5 5.0 1.7 1845 chr2R 22349677 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351522 intron Liprin-gamma - chr2R_10_22350001 chr2R_22350001 RAL-443 1327 chr2R 22360368 22360377 chr2R 22360821 22360829 jockey 4 453 13.0 4.0 8.5 0.4 461 chr2R 22360368 intron Liprin-gamma - chr2R 22360598 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-443 1328 chr2R 22380343 22380383 chr2R 22380454 22380494 10 108 6.0 0.5 3.2 2.4 151 chr2R 22380343 intron wrapper + chr2R 22380418 intron wrapper + chr2R 22380494 intron wrapper + chr2R_10_22380001 chr2R_22380001 RAL-443 1329 chr2R 22420497 22420500 chr2R 22420595 22420598 4 98 6.5 0.5 3.5 0.9 101 chr2R 22420497 intergenic mRpS29 - chr2R 22420548 intergenic mRpS29 -,rad50 + chr2R 22420598 intergenic mRpS29 -,rad50 + chr2R_4_22420001 chr2R_22420001 RAL-443 1330 chr2R 22499850 22499853 chr2R 22499946 22499949 5 96 0.5 6.5 3.5 1.1 99 chr2R 22499850 intron px - chr2R 22499900 intron px - chr2R 22499949 intron px - chr2R_5_22495001 chr2R_22495001 RAL-443 1331 chr2R 22499854 22499872 chr2R 22499933 22499967 9 93 0.5 5.5 3.0 2.2 113 chr2R 22499854 intron px - chr2R 22499910 intron px - chr2R 22499967 intron px - chr2R_9_22495001 chr2R_22495001 RAL-443 1332 chr2R 22499873 22499887 chr2R 22499927 22499960 6 82 1.5 4.5 3.0 1.5 87 chr2R 22499873 intron px - chr2R 22499916 intron px - chr2R 22499960 intron px - chr2R_6_22495001 chr2R_22495001 RAL-443 1333 chr2R 22503860 22503878 chr2R 22503975 22503992 6 114 0.0 6.5 3.2 1.4 132 chr2R 22503860 intron px - chr2R 22503926 intron px - chr2R 22503992 intron px - chr2R_6_22500001 chr2R_22500001 RAL-443 1334 chr2R 22503879 22503896 chr2R 22503966 22504011 9 110 0.0 5.5 2.8 2.4 132 chr2R 22503879 intron px - chr2R 22503945 intron px - chr2R 22504011 intron px - chr2R_9_22500001 chr2R_22500001 RAL-443 1335 chr2R 22575677 22575692 chr2R 22575742 22575783 12 82 2.0 3.5 2.8 3.2 106 chr2R 22575677 intron dnr1 - chr2R 22575730 intron dnr1 - chr2R 22575783 intron dnr1 - chr2R_12_22575001 chr2R_22575001 RAL-443 1336 chr2R 22626930 22626942 chr2R 22627017 22627039 7 94 8.5 9.0 8.8 0.7 109 chr2R 22626930 intron CG33143 + chr2R 22626984 intron CG33143 + chr2R 22627039 intron CG33143 + chr2R_7_22625001 chr2R_22625001 RAL-443 1337 chr2R 22626948 22626960 chr2R 22627014 22627057 10 93 5.5 8.0 6.8 1.3 109 chr2R 22626948 intron CG33143 + chr2R 22627002 intron CG33143 + chr2R 22627057 intron CG33143 + chr2R_10_22625001 chr2R_22625001 RAL-443 1338 chr2R 22641688 22641718 chr2R 22641798 22641828 20 109 7.5 11.0 9.2 2.0 140 chr2R 22641688 intergenic Ugt58Fa -,RpS24 - chr2R 22641758 intergenic Ugt58Fa -,RpS24 - chr2R 22641828 3` UTR Ugt58Fa - chr2R_20_22640001 chr2R_22640001 RAL-443 1339 chr2R 22723216 22723262 chr2R 22723312 22723358 17 93 4.0 2.0 3.0 4.2 142 chr2R 22723216 intron jbug - chr2R 22723287 intron jbug - chr2R 22723358 intron jbug - chr2R_17_22720001 chr2R_22720001 RAL-443 1340 chr2R 22767564 22767600 chr2R 22767652 22767690 14 101 1.5 5.5 3.5 3.1 126 chr2R 22767564 intron CG42260 - chr2R 22767627 intron CG42260 - chr2R 22767690 intron CG42260 - chr2R_14_22765001 chr2R_22765001 RAL-443 1341 chr2R 22774950 22774968 chr2R 22775389 22775407 jockey 6 436 5.0 5.0 5.0 1.0 457 chr2R 22774950 intron CG42260 - chr2R 22775178 intron CG42260 - chr2R 22775407 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-443 1342 chr2R 22774977 22775002 chr2R 22775378 22775441 jockey 6 432 1.5 3.0 2.2 1.9 464 chr2R 22774977 intron CG42260 - chr2R 22775209 intron CG42260 - chr2R 22775441 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-443 1343 chr2R 22787580 22787586 chr2R 22787733 22787739 4 153 1.5 5.0 3.2 1.0 159 chr2R 22787580 intron CG42260 - chr2R 22787660 intron CG42260 - chr2R 22787739 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-443 1344 chr2R 22810553 22810603 chr2R 22810689 22810739 5 127 5.5 0.0 2.8 1.3 186 chr2R 22810553 intron stl + chr2R 22810646 intron stl + chr2R 22810739 intron stl + chr2R_5_22810001 chr2R_22810001 RAL-443 1345 chr2R 22843033 22843042 chr2R 22845019 22845028 flea 4 1985 11.5 6.0 8.8 0.4 1995 chr2R 22843033 intergenic CG9826 + chr2R 22844030 intergenic not near genes chr2R 22845028 intergenic not near genes chr2R_4_22840001 chr2R_22840001 RAL-443 1346 chr2R 22942612 22942657 chr2R 22942743 22942752 4 116 4.5 4.5 4.5 0.7 140 chr2R 22942612 5` UTR CG42694 + chr2R 22942682 5` UTR CG42694 + chr2R 22942752 5` UTR CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-443 1347 chr2R 22951697 22951866 chr2R 22951856 22951972 19 143 0.0 0.0 0.0 19.0 275 chr2R 22951697 3` UTR CR32835 - chr2R 22951834 3` UTR CR32835 - chr2R 22951972 intron CR32835 - chr2R_19_22950001 chr2R_22950001 RAL-443 1348 chr2R 22968119 22968169 chr2R 22968228 22968278 13 106 4.0 4.0 4.0 2.6 159 chr2R 22968119 intergenic not near genes chr2R 22968198 intergenic not near genes chr2R 22968278 intergenic not near genes chr2R_13_22965001 chr2R_22965001 RAL-443 1349 chr2R 23045315 23045358 chr2R 23045549 23045585 11 227 2.0 5.5 3.8 2.3 270 chr2R 23045315 intron twi + chr2R 23045450 intron twi + chr2R 23045585 intron twi + chr2R_11_23045001 chr2R_23045001 RAL-443 1350 chr2R 23052630 23052689 chr2R 23052726 23052765 16 89 4.5 7.0 5.8 2.4 135 chr2R 23052630 intergenic not near genes chr2R 23052698 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_16_23050001 chr2R_23050001 RAL-443 1351 chr2R 23115485 23115536 chr2R 23116019 23116070 16 533 4.5 5.5 5.0 2.7 585 chr2R 23115485 intergenic not near genes chr2R 23115778 intergenic not near genes chr2R 23116070 intergenic not near genes chr2R_16_23115001 chr2R_23115001 RAL-443 1352 chr2R 23162010 23162035 chr2R 23162141 23162168 10 132 9.0 12.0 10.5 0.9 158 chr2R 23162010 exon CG9899 + chr2R 23162089 intergenic CG9899 + chr2R 23162168 intergenic CG9899 + chr2R_10_23160001 chr2R_23160001 RAL-443 1353 chr2R 23186075 23186116 chr2R 23186240 23186281 5 161 3.0 3.5 3.2 1.2 206 chr2R 23186075 intron CG34371 - chr2R 23186178 intron CG34371 - chr2R 23186281 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-443 1354 chr2R 23188546 23188587 chr2R 23188634 23188685 9 96 3.5 4.5 4.0 1.8 139 chr2R 23188546 intron CG34371 - chr2R 23188616 intron CG34371 - chr2R 23188685 intron CG34371 - chr2R_9_23185001 chr2R_23185001 RAL-443 1355 chr2R 23228283 23228316 chr2R 23228407 23228440 14 118 3.5 2.5 3.0 3.5 157 chr2R 23228283 intergenic not near genes chr2R 23228362 intergenic not near genes chr2R 23228440 intergenic not near genes chr2R_14_23225001 chr2R_23225001 RAL-443 1356 chr2R 23231938 23231956 chr2R 23232079 23232097 5 140 5.5 4.5 5.0 0.8 159 chr2R 23231938 intergenic not near genes chr2R 23232018 intergenic not near genes chr2R 23232097 intergenic not near genes chr2R_5_23230001 chr2R_23230001 RAL-443 1357 chr2R 23257516 23257535 chr2R 23257604 23257638 6 99 0.5 6.0 3.2 1.4 122 chr2R 23257516 intergenic not near genes chr2R 23257577 intergenic not near genes chr2R 23257638 intergenic not near genes chr2R_6_23255001 chr2R_23255001 RAL-443 1358 chr2R 23411031 23411077 chr2R 23411133 23411148 13 97 7.5 4.5 6.0 1.9 117 chr2R 23411031 intergenic not near genes chr2R 23411090 intergenic not near genes chr2R 23411148 intergenic not near genes chr2R_13_23410001 chr2R_23410001 RAL-443 1359 chr2R 23421067 23421112 chr2R 23421166 23421211 17 94 9.0 6.0 7.5 2.0 144 chr2R 23421067 intergenic CG9815 - chr2R 23421139 intergenic CG9815 - chr2R 23421211 intergenic CG9815 - chr2R_17_23420001 chr2R_23420001 RAL-443 1360 chr2R 23437232 23437238 chr2R 23437314 23437325 4 87 1.0 5.0 3.0 1.0 93 chr2R 23437232 intergenic not near genes chr2R 23437278 intergenic not near genes chr2R 23437325 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-443 1361 chr2R 23487447 23487470 chr2R 23487537 23487572 5 94 5.5 6.5 6.0 0.7 125 chr2R 23487447 intron CG43795 + chr2R 23487510 intron CG43795 + chr2R 23487572 intron CG43795 + chr2R_5_23485001 chr2R_23485001 RAL-443 1362 chr2R 23570381 23570432 chr2R 23570478 23570489 19 94 7.0 1.0 4.0 3.8 108 chr2R 23570381 intron apt + chr2R 23570435 intron apt + chr2R 23570489 intron apt + chr2R_19_23570001 chr2R_23570001 RAL-443 1363 chr2R 23607025 23607193 chr2R 23607126 23607306 26 104 4.5 5.0 4.8 4.5 281 chr2R 23607025 intron CG17664 - chr2R 23607166 intron CG17664 - chr2R 23607306 intron CG17664 - chr2R_26_23605001 chr2R_23605001 RAL-443 1364 chr2R 23653958 23653987 chr2R 23654055 23654057 7 88 4.0 1.5 2.8 1.8 99 chr2R 23653958 3` UTR retn + chr2R 23654008 3` UTR retn + chr2R 23654057 3` UTR retn + chr2R_7_23650001 chr2R_23650001 RAL-443 1365 chr2R 23653993 23654002 chr2R 23654052 23654099 5 81 2.0 1.0 1.5 2.0 106 chr2R 23653993 3` UTR retn + chr2R 23654046 3` UTR retn + chr2R 23654099 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-443 1366 chr2R 23668830 23668868 chr2R 23668931 23668949 6 100 2.0 1.0 1.5 2.4 119 chr2R 23668830 intron Pde8 + chr2R 23668890 intron Pde8 + chr2R 23668949 intron Pde8 + chr2R_6_23665001 chr2R_23665001 RAL-443 1367 chr2R 23726212 23726254 chr2R 23726322 23726333 12 105 3.0 3.0 3.0 3.0 121 chr2R 23726212 intron Sesn + chr2R 23726272 intron Sesn + chr2R 23726333 intron Sesn + chr2R_12_23725001 chr2R_23725001 RAL-443 1368 chr2R 23784456 23784507 chr2R 23784549 23784605 18 91 3.5 2.0 2.8 4.7 149 chr2R 23784456 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784605 intron CG9850 - chr2R_18_23780001 chr2R_23780001 RAL-443 1369 chr2R 23914291 23914331 chr2R 23921935 23921974 412 8 7644 2.5 3.0 2.8 2.1 7683 chr2R 23914291 exon kcc + chr2R 23918132 intron kcc + chr2R 23921974 exon kcc + chr2R_8_23915001 chr2R_23915001 RAL-443 1370 chr2R 24031362 24031413 chr2R 24031466 24031512 26 99 4.0 8.5 6.2 3.6 150 chr2R 24031362 5` UTR CG30172 - chr2R 24031437 intergenic CG30172 -,Chi - chr2R 24031512 intergenic Chi -,CG30172 - chr2R_26_24030001 chr2R_24030001 RAL-443 1371 chr2R 24177217 24177260 chr2R 24184721 24184765 412 31 7502 12.0 8.0 10.0 2.8 7548 chr2R 24177217 3` UTR Nop60B + chr2R 24180991 intron Nop60B + chr2R 24184765 3` UTR Nop60B + chr2R_31_24180001 chr2R_24180001 RAL-443 1372 chr2R 24291938 24291965 chr2R 24292087 24292104 6 142 3.0 2.5 2.8 1.6 166 chr2R 24291938 intergenic not near genes chr2R 24292021 intergenic not near genes chr2R 24292104 intergenic not near genes chr2R_6_24290001 chr2R_24290001 RAL-443 1373 chr2R 24321893 24321940 chr2R 24321994 24322038 8 96 4.5 0.5 2.5 2.3 145 chr2R 24321893 intergenic not near genes chr2R 24321966 intergenic not near genes chr2R 24322038 intergenic not near genes chr2R_8_24320001 chr2R_24320001 RAL-443 1374 chr2R 24353409 24353458 chr2R 24361791 24361815 roo 12 8376 3.5 5.5 4.5 2.2 8406 chr2R 24353409 intron,intron bs +,CR44811 - chr2R 24357612 intron,intron bs +,CR44811 - chr2R 24361815 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-443 1375 chr2R 24414118 24414135 chr2R 24414232 24414248 8 114 8.0 7.5 7.8 0.9 130 chr2R 24414118 3` UTR,5` UTR CG45068 +,CG45069 + chr2R 24414183 3` UTR,5` UTR CG45068 +,CG45069 + chr2R 24414248 3` UTR,5` UTR CG45068 +,CG45069 + chr2R_8_24410001 chr2R_24410001 RAL-443 1376 chr2R 24414137 24414170 chr2R 24414231 24414264 17 109 3.5 7.5 5.5 2.6 127 chr2R 24414137 3` UTR,5` UTR CG45068 +,CG45069 + chr2R 24414200 3` UTR,5` UTR CG45068 +,CG45069 + chr2R 24414264 3` UTR,5` UTR CG45068 +,CG45069 + chr2R_17_24410001 chr2R_24410001 RAL-443 1377 chr2R 24430921 24430926 chr2R 24431029 24431034 4 108 0.0 11.0 5.5 0.6 113 chr2R 24430921 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431034 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-443 1378 chr2R 24430938 24430948 chr2R 24431024 24431056 4 102 0.0 9.0 4.5 0.7 118 chr2R 24430938 intergenic CG15873 -,Pgam5-2 - chr2R 24430997 intergenic CG15873 -,Pgam5-2 - chr2R 24431056 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-443 1379 chr2R 24555836 24555857 chr2R 24555941 24555966 6 107 1.5 7.0 4.2 1.2 130 chr2R 24555836 intron,intron CG4622 -,ITP + chr2R 24555901 intron,intron CG4622 -,ITP + chr2R 24555966 5` UTR,intron CG4622 -,ITP + chr2R_6_24555001 chr2R_24555001 RAL-443 1380 chr2R 24592930 24592976 chr2R 24593043 24593089 8 113 4.5 1.0 2.8 2.1 159 chr2R 24592930 intron pio + chr2R 24593010 intron pio + chr2R 24593089 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-443 1381 chr2R 24647571 24647616 chr2R 24655148 24655193 412 14 7574 3.5 4.5 4.0 2.8 7622 chr2R 24647571 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655193 intergenic not near genes chr2R_14_24650001 chr2R_24650001 RAL-443 1382 chr2R 24689995 24690044 chr2R 24690111 24690148 20 110 3.0 3.5 3.2 4.8 153 chr2R 24689995 intergenic not near genes chr2R 24690072 intergenic not near genes chr2R 24690148 intergenic not near genes chr2R_20_24690001 chr2R_24690001 RAL-443 1383 chr2R 24719798 24719825 chr2R 24719908 24719957 6 117 1.5 3.5 2.5 1.7 159 chr2R 24719798 intron Mid1 - chr2R 24719878 intron Mid1 - chr2R 24719957 intron Mid1 - chr2R_6_24715001 chr2R_24715001 RAL-443 1384 chr2R 24727867 24727914 chr2R 24735395 24735425 mdg1 8 7521 3.5 4.0 3.8 1.7 7558 chr2R 24727867 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-443 1385 chr2R 24763597 24763617 chr2R 24765590 24765612 G2 6 1994 2.0 2.0 2.0 2.0 2015 chr2R 24763597 exon CG3894 + chr2R 24764604 intron CG3894 + chr2R 24765612 exon CG3894 + chr2R_6_24760001 chr2R_24760001 RAL-443 1386 chr2R 24763621 24763643 chr2R 24765587 24765633 G2 5 1978 1.0 2.0 1.5 2.0 2012 chr2R 24763621 exon CG3894 + chr2R 24764627 intron CG3894 + chr2R 24765633 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-443 1387 chr2R 24884031 24884079 chr2R 24884133 24884181 22 100 6.0 3.5 4.8 3.8 150 chr2R 24884031 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884181 intron NKAIN + chr2R_22_24880001 chr2R_24880001 RAL-443 1388 chr2R 24911475 24911480 chr2R 24911553 24911563 5 85 6.5 4.0 5.2 0.8 88 chr2R 24911475 intron NaCP60E + chr2R 24911519 intron NaCP60E + chr2R 24911563 intron NaCP60E + chr2R_5_24910001 chr2R_24910001 RAL-443 1389 chr2R 24911488 24911493 chr2R 24911549 24911579 5 85 3.5 4.0 3.8 1.0 91 chr2R 24911488 intron NaCP60E + chr2R 24911534 intron NaCP60E + chr2R 24911579 intron NaCP60E + chr2R_5_24910001 chr2R_24910001 RAL-443 1390 chr2R 24933015 24933042 chr2R 24933474 24933501 6 462 14.5 17.5 16.0 0.4 486 chr2R 24933015 intron CG30427 - chr2R 24933258 intron CG30427 - chr2R 24933501 intron CG30427 - chr2R_6_24930001 chr2R_24930001 RAL-443 1391 chr2R 25004873 25004902 chr2R 25004971 25004979 5 94 10.0 10.5 10.2 0.4 106 chr2R 25004873 intron zip - chr2R 25004926 intron zip - chr2R 25004979 intron zip - chr2R_5_25000001 chr2R_25000001 RAL-443 1392 chr2R 25004909 25004924 chr2R 25004966 25004972 9 76 4.5 11.0 7.8 1.0 63 chr2R 25004909 intron zip - chr2R 25004940 intron zip - chr2R 25004972 intron zip - chr2R_9_25000001 chr2R_25000001 RAL-443 1393 chr2R 25022625 25022672 chr2R 25022723 25022776 17 101 6.5 3.0 4.8 2.9 151 chr2R 25022625 intron uzip + chr2R 25022700 intron uzip + chr2R 25022776 intron uzip + chr2R_17_25020001 chr2R_25020001 RAL-443 1394 chr2R 25056849 25056880 chr2R 25056939 25056960 7 91 3.5 2.5 3.0 1.8 111 chr2R 25056849 intergenic not near genes chr2R 25056904 intergenic not near genes chr2R 25056960 intergenic not near genes chr2R_7_25055001 chr2R_25055001 RAL-443 1395 chr2R 25083334 25083342 chr2R 25083428 25083436 5 94 13.0 9.0 11.0 0.4 102 chr2R 25083334 intron gol - chr2R 25083385 intron gol - chr2R 25083436 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-443 1396 chr2R 25083347 25083378 chr2R 25083424 25083439 5 73 8.0 8.5 8.2 0.5 92 chr2R 25083347 intron gol - chr2R 25083393 intron gol - chr2R 25083439 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-443 1397 chr2R 25101254 25101303 chr2R 25101376 25101425 15 119 4.0 5.0 4.5 2.7 171 chr2R 25101254 intron lov - chr2R 25101340 intron lov - chr2R 25101425 intron lov - chr2R_15_25100001 chr2R_25100001 RAL-443 1398 chr2R 25141634 25141682 chr2R 25159344 25159392 roo 15 17702 6.0 6.0 6.0 2.1 17758 chr2R 25141634 intergenic not near genes chr2R 25150513 intergenic not near genes chr2R 25159392 intergenic not near genes chr2R_15_25150001 chr2R_25150001 RAL-443 1399 chr2R 25180754 25180795 chr2R 25180846 25180892 19 96 3.5 4.5 4.0 3.8 138 chr2R 25180754 intergenic not near genes chr2R 25180823 intergenic not near genes chr2R 25180892 intergenic not near genes chr2R_19_25180001 chr2R_25180001 RAL-443 1400 chr2R 25207812 25207847 chr2R 25208234 25208269 18 424 33.5 34.0 33.8 0.5 457 chr2R 25207812 5` UTR CG9380 - chr2R 25208040 intron CG9380 - chr2R 25208269 intron CG9380 - chr2R_18_25205001 chr2R_25205001 RAL-443 1401 chr3L 68973 68992 chr3L 69080 69091 4 105 6.5 7.0 6.8 0.5 118 chr3L 68973 3` UTR Lsp1gamma + chr3L 69032 intergenic Lsp1gamma +,CR44510 + chr3L 69091 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-443 1402 chr3L 105981 106021 chr3L 106130 106170 14 144 7.0 7.5 7.2 1.7 189 chr3L 105981 intergenic not near genes chr3L 106076 intergenic not near genes chr3L 106170 intergenic not near genes chr3L_14_105001 chr3L_105001 RAL-443 1403 chr3L 106470 106523 chr3L 107613 107666 20 1144 45.0 49.0 47.0 0.4 1196 chr3L 106470 intergenic not near genes chr3L 107068 intergenic not near genes chr3L 107666 intergenic not near genes chr3L_20_105001 chr3L_105001 RAL-443 1404 chr3L 110193 110208 chr3L 119377 119395 roo 10 9186 11.0 3.0 7.0 1.2 9202 chr3L 110193 intergenic not near genes chr3L 114794 intergenic not near genes chr3L 119395 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-443 1405 chr3L 110210 110242 chr3L 119376 119429 roo 13 9178 5.0 3.0 4.0 2.6 9219 chr3L 110210 intergenic not near genes chr3L 114820 intergenic not near genes chr3L 119429 intergenic not near genes chr3L_13_110001 chr3L_110001 RAL-443 1406 chr3L 161686 161717 chr3L 162532 162563 8 846 5.0 3.5 4.2 1.5 877 chr3L 161686 intron p130CAS + chr3L 162124 intron p130CAS + chr3L 162563 intron p130CAS + chr3L_8_160001 chr3L_160001 RAL-443 1407 chr3L 165658 165707 chr3L 165816 165865 25 156 6.5 5.0 5.8 3.7 207 chr3L 165658 intron p130CAS + chr3L 165762 intron p130CAS + chr3L 165865 intron p130CAS + chr3L_25_165001 chr3L_165001 RAL-443 1408 chr3L 375229 375278 chr3L 375333 375362 8 95 0.0 6.5 3.2 1.9 133 chr3L 375229 intron trh - chr3L 375296 intron trh - chr3L 375362 intron trh - chr3L_8_375001 chr3L_375001 RAL-443 1409 chr3L 402380 402406 chr3L 402478 402504 10 95 0.5 6.5 3.5 2.2 124 chr3L 402380 intergenic not near genes chr3L 402442 intergenic not near genes chr3L 402504 intergenic not near genes chr3L_10_400001 chr3L_400001 RAL-443 1410 chr3L 402688 402702 chr3L 409742 409750 297 4 7061 5.5 10.0 7.8 0.5 7062 chr3L 402688 intergenic not near genes chr3L 406219 intergenic not near genes chr3L 409750 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-443 1411 chr3L 402703 402718 chr3L 409741 409791 297 8 7061 2.0 10.0 6.0 1.1 7088 chr3L 402703 intergenic not near genes chr3L 406247 intergenic not near genes chr3L 409791 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-443 1412 chr3L 477877 477900 chr3L 477972 478003 13 101 3.0 0.0 1.5 5.2 126 chr3L 477877 intron klar - chr3L 477940 intron klar - chr3L 478003 intron klar - chr3L_13_475001 chr3L_475001 RAL-443 1413 chr3L 514946 514965 chr3L 515013 515062 10 87 4.5 3.0 3.8 2.1 116 chr3L 514946 intron klar - chr3L 515004 intron klar - chr3L 515062 intron klar - chr3L_10_510001 chr3L_510001 RAL-443 1414 chr3L 524742 524777 chr3L 524827 524879 16 101 0.5 3.0 1.8 5.7 137 chr3L 524742 intron klar - chr3L 524810 intron klar - chr3L 524879 intron klar - chr3L_16_520001 chr3L_520001 RAL-443 1415 chr3L 567074 567126 chr3L 567263 567285 8 186 3.5 0.5 2.0 2.7 211 chr3L 567074 intron hipk + chr3L 567180 intron hipk + chr3L 567285 intron hipk + chr3L_8_565001 chr3L_565001 RAL-443 1416 chr3L 603043 603050 chr3L 603146 603153 9 102 9.0 0.0 4.5 1.6 110 chr3L 603043 intron CG13893 - chr3L 603098 intron CG13893 - chr3L 603153 intron CG13893 - chr3L_9_600001 chr3L_600001 RAL-443 1417 chr3L 606876 606922 chr3L 606968 607021 11 98 0.0 2.0 1.0 5.5 145 chr3L 606876 intergenic Reg-2 - chr3L 606948 intergenic Reg-2 - chr3L 607021 intergenic Reg-2 - chr3L_11_605001 chr3L_605001 RAL-443 1418 chr3L 642458 642482 chr3L 642569 642588 8 108 8.5 12.0 10.2 0.7 130 chr3L 642458 5` UTR CR43334 + chr3L 642523 5` UTR CR43334 + chr3L 642588 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-443 1419 chr3L 643829 643830 chr3L 21448026 21448026 4 20804197 38.5 26.0 32.2 0.1 20804197 chr3L 643829 5` UTR CR43334 + chr3L 11045928 intron CG43693 - chr3L 21448026 3` UTR Syx7 + chr3L_4_11045001 chr3L_11045001 RAL-443 1420 chr3L 705882 705932 chr3L 705998 706047 14 115 7.0 8.5 7.8 1.6 165 chr3L 705882 intergenic CG13895 -,CR44514 + chr3L 705964 3` UTR CG13895 - chr3L 706047 3` UTR CG13895 - chr3L_14_705001 chr3L_705001 RAL-443 1421 chr3L 740631 740667 chr3L 741061 741068 6 420 2.0 3.0 2.5 1.7 437 chr3L 740631 intron hng3 - chr3L 740850 intron hng3 - chr3L 741068 intron hng3 - chr3L_6_740001 chr3L_740001 RAL-443 1422 chr3L 789893 789939 chr3L 790398 790429 roo 24 503 10.5 2.0 6.2 3.3 536 chr3L 789893 intergenic not near genes chr3L 790161 intergenic not near genes chr3L 790429 intergenic not near genes chr3L_24_790001 chr3L_790001 RAL-443 1423 chr3L 824023 824040 chr3L 824125 824142 6 101 3.5 0.0 1.8 2.1 119 chr3L 824023 intergenic not near genes chr3L 824082 intergenic not near genes chr3L 824142 intergenic not near genes chr3L_6_820001 chr3L_820001 RAL-443 1424 chr3L 832590 832634 chr3L 832690 832729 12 99 4.5 1.0 2.8 3.2 139 chr3L 832590 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832660 intron CG13900 - chr3L 832729 exon CG13900 - chr3L_12_830001 chr3L_830001 RAL-443 1425 chr3L 852550 852565 chr3L 852672 852687 7 122 10.5 12.0 11.2 0.6 137 chr3L 852550 3` UTR CG13890 + chr3L 852618 3` UTR CG13890 + chr3L 852687 intergenic CG13890 +,dpr20 - chr3L_7_850001 chr3L_850001 RAL-443 1426 chr3L 857981 857999 chr3L 866481 866489 Tirant 4 8494 12.0 2.5 7.2 0.5 8508 chr3L 857981 intergenic not near genes chr3L 862235 intergenic not near genes chr3L 866489 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-443 1427 chr3L 875637 875692 chr3L 875744 875758 17 95 4.5 2.5 3.5 3.8 121 chr3L 875637 intron CG32479 + chr3L 875698 intron CG32479 + chr3L 875758 intron CG32479 + chr3L_17_875001 chr3L_875001 RAL-443 1428 chr3L 899995 900015 chr3L 900099 900119 14 104 0.0 13.5 6.8 1.8 124 chr3L 899995 intergenic not near genes chr3L 900057 intergenic not near genes chr3L 900119 intergenic not near genes chr3L_14_900001 chr3L_900001 RAL-443 1429 chr3L 925159 925207 chr3L 932605 932653 mdg1 20 7436 3.0 4.5 3.8 4.2 7494 chr3L 925159 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932653 intron Glut1 + chr3L_20_925001 chr3L_925001 RAL-443 1430 chr3L 939753 939801 chr3L 940894 940906 jockey 13 1128 4.5 8.5 6.5 1.7 1153 chr3L 939753 intron Glut1 + chr3L 940330 intron Glut1 + chr3L 940906 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-443 1431 chr3L 961001 961012 chr3L 961114 961125 8 113 12.5 5.5 9.0 0.8 124 chr3L 961001 intron Glut1 + chr3L 961063 intron Glut1 + chr3L 961125 intron Glut1 + chr3L_8_960001 chr3L_960001 RAL-443 1432 chr3L 961015 961044 chr3L 961111 961151 14 109 4.5 5.5 5.0 2.3 136 chr3L 961015 intron Glut1 + chr3L 961083 intron Glut1 + chr3L 961151 intron Glut1 + chr3L_14_960001 chr3L_960001 RAL-443 1433 chr3L 1015007 1015054 chr3L 1015139 1015186 9 128 2.5 4.0 3.2 2.1 179 chr3L 1015007 intron trio - chr3L 1015096 intron trio - chr3L 1015186 intron trio - chr3L_9_1015001 chr3L_1015001 RAL-443 1434 chr3L 1040531 1040579 chr3L 1040635 1040670 16 102 1.5 3.0 2.2 5.0 139 chr3L 1040531 intron bab1 - chr3L 1040600 intron bab1 - chr3L 1040670 intron bab1 - chr3L_16_1040001 chr3L_1040001 RAL-443 1435 chr3L 1103970 1104013 chr3L 1104068 1104111 4 98 6.5 0.0 3.2 1.0 141 chr3L 1103970 intergenic not near genes chr3L 1104040 intergenic not near genes chr3L 1104111 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-443 1436 chr3L 1109616 1109667 chr3L 1109723 1109774 21 103 3.0 2.0 2.5 6.0 158 chr3L 1109616 intergenic not near genes chr3L 1109695 intergenic not near genes chr3L 1109774 intergenic not near genes chr3L_21_1105001 chr3L_1105001 RAL-443 1437 chr3L 1136150 1136169 chr3L 1139652 1139685 8 3505 17.5 32.5 25.0 0.3 3535 chr3L 1136150 intergenic not near genes chr3L 1137918 intergenic not near genes chr3L 1139685 intergenic not near genes chr3L_8_1135001 chr3L_1135001 RAL-443 1438 chr3L 1154108 1154153 chr3L 1163278 1163308 roo 17 9166 7.5 4.0 5.8 2.5 9200 chr3L 1154108 intron bab2 - chr3L 1158708 intron bab2 - chr3L 1163308 intron bab2 - chr3L_17_1155001 chr3L_1155001 RAL-443 1439 chr3L 1177629 1177664 chr3L 1177727 1177762 10 94 3.5 2.0 2.8 2.6 133 chr3L 1177629 intergenic bab2 - chr3L 1177696 intergenic bab2 - chr3L 1177762 intergenic bab2 - chr3L_10_1175001 chr3L_1175001 RAL-443 1440 chr3L 1219609 1219624 chr3L 1227330 1227338 412 5 7731 1.5 3.5 2.5 1.4 7729 chr3L 1219609 intron mwh + chr3L 1223474 intron mwh + chr3L 1227338 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-443 1441 chr3L 1374415 1374450 chr3L 1374512 1374520 8 80 11.5 10.5 11.0 0.7 105 chr3L 1374415 intron,intron Ptp61F -,ru + chr3L 1374468 intron,intron Ptp61F -,ru + chr3L 1374520 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-443 1442 chr3L 1396729 1396759 chr3L 1396832 1396862 9 104 30.5 31.5 31.0 0.3 133 chr3L 1396729 intron Ptp61F - chr3L 1396796 intron Ptp61F - chr3L 1396862 intron Ptp61F - chr3L_9_1395001 chr3L_1395001 RAL-443 1443 chr3L 1415769 1415782 chr3L 1415871 1415884 4 102 3.0 3.0 3.0 1.0 115 chr3L 1415769 intron Ptp61F - chr3L 1415826 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_4_1415001 chr3L_1415001 RAL-443 1444 chr3L 1415798 1415808 chr3L 1415857 1415894 6 84 1.5 2.5 2.0 2.0 96 chr3L 1415798 intron Ptp61F - chr3L 1415846 intron Ptp61F - chr3L 1415894 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-443 1445 chr3L 1424756 1424766 chr3L 1430018 1430021 Rt1a 4 5264 3.5 1.5 2.5 1.1 5265 chr3L 1424756 intron Ptp61F - chr3L 1427388 intron Ptp61F - chr3L 1430021 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-443 1446 chr3L 1477368 1477402 chr3L 1477478 1477504 9 105 9.0 0.0 4.5 1.6 136 chr3L 1477368 intron stet - chr3L 1477436 intron stet - chr3L 1477504 intron stet - chr3L_9_1475001 chr3L_1475001 RAL-443 1447 chr3L 1505984 1505995 chr3L 1513598 1513612 17.6 6 7616 10.5 5.0 7.8 0.7 7628 chr3L 1505984 intron,intron Psa +,cue - chr3L 1509798 intron,intron Psa +,cue - chr3L 1513612 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-443 1448 chr3L 1505996 1506033 chr3L 1513592 1513619 17.6 18 7612 4.5 4.0 4.2 3.5 7623 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513619 intron,intron Psa +,cue - chr3L_18_1505001 chr3L_1505001 RAL-443 1449 chr3L 1528217 1528256 chr3L 1528302 1528339 6 89 4.0 6.5 5.2 1.0 122 chr3L 1528217 intron CG12090 - chr3L 1528278 intron CG12090 - chr3L 1528339 intron CG12090 - chr3L_6_1525001 chr3L_1525001 RAL-443 1450 chr3L 1740840 1740845 chr3L 1741103 1741108 pogo 5 263 13.5 9.5 11.5 0.4 268 chr3L 1740840 intron Gk + chr3L 1740974 intron Gk + chr3L 1741108 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-443 1451 chr3L 1740852 1740887 chr3L 1741100 1741109 pogo 8 249 3.5 8.5 6.0 1.1 257 chr3L 1740852 intron Gk + chr3L 1740980 intron Gk + chr3L 1741109 intron Gk + chr3L_8_1740001 chr3L_1740001 RAL-443 1452 chr3L 1805679 1805710 chr3L 1805873 1805904 12 193 3.5 3.5 3.5 2.7 225 chr3L 1805679 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805904 intron CG42676 + chr3L_12_1805001 chr3L_1805001 RAL-443 1453 chr3L 1821623 1821647 chr3L 1821725 1821726 8 98 11.5 6.0 8.8 0.8 103 chr3L 1821623 intron GV1 + chr3L 1821674 intron GV1 + chr3L 1821726 intron GV1 + chr3L_8_1820001 chr3L_1820001 RAL-443 1454 chr3L 1853025 1853049 chr3L 1853129 1853153 9 104 7.5 4.0 5.8 1.3 128 chr3L 1853025 intron CG13936 - chr3L 1853089 intron CG13936 - chr3L 1853153 intron CG13936 - chr3L_9_1850001 chr3L_1850001 RAL-443 1455 chr3L 1905348 1905352 chr3L 1905462 1905466 4 114 8.0 7.0 7.5 0.5 118 chr3L 1905348 intron CG1887 - chr3L 1905407 intron CG1887 - chr3L 1905466 intron CG1887 - chr3L_4_1905001 chr3L_1905001 RAL-443 1456 chr3L 1922427 1922440 chr3L 1922526 1922540 4 100 5.5 5.0 5.2 0.6 113 chr3L 1922427 intron Dbx + chr3L 1922484 intron Dbx + chr3L 1922540 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-443 1457 chr3L 1991119 1991136 chr3L 1991203 1991234 9 93 6.0 5.0 5.5 1.4 115 chr3L 1991119 intergenic not near genes chr3L 1991176 intergenic not near genes chr3L 1991234 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-443 1458 chr3L 2016818 2016834 chr3L 2016923 2016940 6 105 10.5 6.5 8.5 0.6 122 chr3L 2016818 intergenic not near genes chr3L 2016879 intergenic not near genes chr3L 2016940 intergenic not near genes chr3L_6_2015001 chr3L_2015001 RAL-443 1459 chr3L 2016836 2016864 chr3L 2016917 2016970 11 102 4.0 5.5 4.8 1.9 134 chr3L 2016836 intergenic not near genes chr3L 2016903 intergenic not near genes chr3L 2016970 intergenic not near genes chr3L_11_2015001 chr3L_2015001 RAL-443 1460 chr3L 2035103 2035304 chr3L 2035302 2035401 4 169 0.0 0.0 0.0 4.0 298 chr3L 2035103 intergenic not near genes chr3L 2035252 intergenic not near genes chr3L 2035401 intergenic not near genes chr3L_4_2035001 chr3L_2035001 RAL-443 1461 chr3L 2108228 2108281 chr3L 2113452 2113504 copia 29 5223 3.5 5.5 4.5 5.3 5276 chr3L 2108228 intron sls - chr3L 2110866 intron sls - chr3L 2113504 intron sls - chr3L_29_2110001 chr3L_2110001 RAL-443 1462 chr3L 2163963 2164106 chr3L 2164060 2164273 8 129 0.0 0.0 0.0 8.0 310 chr3L 2163963 intergenic CG15822 - chr3L 2164118 intergenic CG15822 - chr3L 2164273 intergenic CG15822 - chr3L_8_2160001 chr3L_2160001 RAL-443 1463 chr3L 2168761 2168777 chr3L 2168871 2168888 7 109 8.5 7.0 7.8 0.8 127 chr3L 2168761 exon CG15879 - chr3L 2168824 intron CG15879 - chr3L 2168888 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-443 1464 chr3L 2168784 2168804 chr3L 2168869 2168915 18 102 5.5 6.5 6.0 2.6 131 chr3L 2168784 exon CG15879 - chr3L 2168850 intron CG15879 - chr3L 2168915 intron CG15879 - chr3L_18_2165001 chr3L_2165001 RAL-443 1465 chr3L 2294551 2294591 chr3L 2294688 2294728 5 137 7.5 5.0 6.2 0.7 177 chr3L 2294551 intron MsR2 + chr3L 2294640 intron MsR2 + chr3L 2294728 intron MsR2 + chr3L_5_2290001 chr3L_2290001 RAL-443 1466 chr3L 2307985 2308035 chr3L 2308111 2308159 15 123 6.5 2.0 4.2 2.9 174 chr3L 2307985 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308159 intergenic not near genes chr3L_15_2305001 chr3L_2305001 RAL-443 1467 chr3L 2308513 2308552 chr3L 2308627 2308666 16 111 3.5 2.5 3.0 4.0 153 chr3L 2308513 intergenic not near genes chr3L 2308590 intergenic not near genes chr3L 2308666 intergenic not near genes chr3L_16_2305001 chr3L_2305001 RAL-443 1468 chr3L 2321137 2321182 chr3L 2321234 2321279 10 92 6.0 4.0 5.0 1.7 142 chr3L 2321137 intergenic not near genes chr3L 2321208 intergenic not near genes chr3L 2321279 intergenic not near genes chr3L_10_2320001 chr3L_2320001 RAL-443 1469 chr3L 2355427 2355463 chr3L 2355635 2355671 5 208 2.0 0.5 1.2 2.3 244 chr3L 2355427 intergenic not near genes chr3L 2355549 intergenic not near genes chr3L 2355671 intergenic not near genes chr3L_5_2355001 chr3L_2355001 RAL-443 1470 chr3L 2447490 2447533 chr3L 2456660 2456689 roo 10 9169 4.0 2.5 3.2 2.4 9199 chr3L 2447490 intron CG45186 + chr3L 2452090 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-443 1471 chr3L 2459122 2459162 chr3L 2459303 2459323 16 179 4.5 5.5 5.0 2.7 201 chr3L 2459122 intron CG45186 + chr3L 2459222 intron CG45186 + chr3L 2459323 intron CG45186 + chr3L_16_2455001 chr3L_2455001 RAL-443 1472 chr3L 2483133 2483162 chr3L 2483232 2483236 4 93 1.0 5.5 3.2 1.0 103 chr3L 2483133 intron CG45186 + chr3L 2483184 intron CG45186 + chr3L 2483236 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-443 1473 chr3L 2485566 2485621 chr3L 2485664 2485719 11 94 3.5 2.0 2.8 2.9 153 chr3L 2485566 intron CG45186 + chr3L 2485642 intron CG45186 + chr3L 2485719 intron CG45186 + chr3L_11_2485001 chr3L_2485001 RAL-443 1474 chr3L 2493805 2493850 chr3L 2493903 2493958 14 98 1.5 0.0 0.8 7.8 153 chr3L 2493805 intron CG45186 + chr3L 2493882 intron CG45186 + chr3L 2493958 intron CG45186 + chr3L_14_2490001 chr3L_2490001 RAL-443 1475 chr3L 2533667 2533678 chr3L 2533731 2533780 5 83 2.5 5.5 4.0 1.0 113 chr3L 2533667 intron Spn - chr3L 2533724 intron Spn - chr3L 2533780 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-443 1476 chr3L 2546742 2546794 chr3L 2546851 2546903 9 105 9.0 7.0 8.0 1.0 161 chr3L 2546742 intron Spn - chr3L 2546822 intron Spn - chr3L 2546903 intron Spn - chr3L_9_2545001 chr3L_2545001 RAL-443 1477 chr3L 2561508 2561517 chr3L 2561605 2561609 4 96 16.5 4.0 10.2 0.4 101 chr3L 2561508 intron msn - chr3L 2561558 intron msn - chr3L 2561609 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-443 1478 chr3L 2561521 2561561 chr3L 2561604 2561658 13 92 6.0 4.0 5.0 2.2 137 chr3L 2561521 intron msn - chr3L 2561590 intron msn - chr3L 2561658 intron msn - chr3L_13_2560001 chr3L_2560001 RAL-443 1479 chr3L 2590336 2590371 chr3L 2590465 2590500 8 125 6.0 0.0 3.0 2.0 164 chr3L 2590336 intron dos + chr3L 2590418 intron dos + chr3L 2590500 intron dos + chr3L_8_2590001 chr3L_2590001 RAL-443 1480 chr3L 2683926 2683971 chr3L 2684022 2684038 16 92 6.5 7.0 6.8 2.1 112 chr3L 2683926 intron Fife - chr3L 2683982 intron Fife - chr3L 2684038 intron Fife - chr3L_16_2680001 chr3L_2680001 RAL-443 1481 chr3L 2719529 2719560 chr3L 2719651 2719682 11 121 8.0 6.5 7.2 1.3 153 chr3L 2719529 3` UTR Mrtf - chr3L 2719606 3` UTR Mrtf - chr3L 2719682 3` UTR Mrtf - chr3L_11_2715001 chr3L_2715001 RAL-443 1482 chr3L 2731617 2731621 chr3L 2731727 2731731 4 110 8.5 3.5 6.0 0.6 114 chr3L 2731617 intron Mrtf - chr3L 2731674 intron Mrtf - chr3L 2731731 intron Mrtf - chr3L_4_2730001 chr3L_2730001 RAL-443 1483 chr3L 2731622 2731658 chr3L 2731722 2731753 21 108 2.0 3.5 2.8 5.5 131 chr3L 2731622 intron Mrtf - chr3L 2731688 intron Mrtf - chr3L 2731753 intron Mrtf - chr3L_21_2730001 chr3L_2730001 RAL-443 1484 chr3L 2751437 2751456 chr3L 2755752 2755771 F-element 5 4313 16.5 10.5 13.5 0.3 4334 chr3L 2751437 intron Mrtf - chr3L 2753604 intron Mrtf - chr3L 2755771 intron Mrtf - chr3L_5_2750001 chr3L_2750001 RAL-443 1485 chr3L 2751459 2751461 chr3L 2755747 2755776 F-element 5 4308 13.0 10.5 11.8 0.4 4317 chr3L 2751459 intron Mrtf - chr3L 2753618 intron Mrtf - chr3L 2755776 intron Mrtf - chr3L_5_2750001 chr3L_2750001 RAL-443 1486 chr3L 2766721 2766728 chr3L 2766836 2766845 4 116 11.0 5.5 8.2 0.4 124 chr3L 2766721 intergenic Mrtf -,Non2 + chr3L 2766783 intergenic Non2 +,Mrtf - chr3L 2766845 intergenic Non2 +,Mrtf - chr3L_4_2765001 chr3L_2765001 RAL-443 1487 chr3L 2766730 2766764 chr3L 2766829 2766881 9 109 3.5 4.5 4.0 1.8 151 chr3L 2766730 intergenic Mrtf -,Non2 + chr3L 2766806 intergenic Non2 +,Mrtf - chr3L 2766881 intergenic Non2 +,Mrtf - chr3L_9_2765001 chr3L_2765001 RAL-443 1488 chr3L 2795711 2795749 chr3L 2795854 2795892 13 143 5.0 4.0 4.5 2.4 181 chr3L 2795711 intron CG43444 - chr3L 2795802 intron CG43444 - chr3L 2795892 intron CG43444 - chr3L_13_2795001 chr3L_2795001 RAL-443 1489 chr3L 2882094 2882144 chr3L 2882190 2882240 19 95 4.5 9.5 7.0 2.4 146 chr3L 2882094 intergenic not near genes chr3L 2882167 intergenic not near genes chr3L 2882240 intergenic not near genes chr3L_19_2880001 chr3L_2880001 RAL-443 1490 chr3L 2896515 2896539 chr3L 2896612 2896636 7 94 7.5 4.5 6.0 1.0 121 chr3L 2896515 intron Shab + chr3L 2896576 intron Shab + chr3L 2896636 intron Shab + chr3L_7_2895001 chr3L_2895001 RAL-443 1491 chr3L 2927846 2927870 chr3L 2936116 2936167 Tirant 10 8293 8.5 5.5 7.0 1.2 8321 chr3L 2927846 intron Shab + chr3L 2932006 intron Shab + chr3L 2936167 intron Shab + chr3L_10_2930001 chr3L_2930001 RAL-443 1492 chr3L 2966713 2966724 chr3L 2974157 2974167 mdg1 5 7444 6.5 1.0 3.8 1.0 7454 chr3L 2966713 intergenic not near genes chr3L 2970440 intergenic not near genes chr3L 2974167 intergenic not near genes chr3L_5_2970001 chr3L_2970001 RAL-443 1493 chr3L 3028331 3028366 chr3L 3028420 3028465 6 90 4.0 4.0 4.0 1.2 134 chr3L 3028331 intergenic not near genes chr3L 3028398 intergenic not near genes chr3L 3028465 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-443 1494 chr3L 3040309 3040347 chr3L 3042115 3042155 S-element 10 1808 6.5 6.5 6.5 1.3 1846 chr3L 3040309 3` UTR CG2162 + chr3L 3041232 intergenic not near genes chr3L 3042155 intergenic Jafrac2 + chr3L_10_3040001 chr3L_3040001 RAL-443 1495 chr3L 3050882 3050905 chr3L 3050989 3051012 10 106 8.0 2.0 5.0 1.7 130 chr3L 3050882 intron CG32485 + chr3L 3050947 intron CG32485 + chr3L 3051012 exon CG32485 + chr3L_10_3050001 chr3L_3050001 RAL-443 1496 chr3L 3051723 3051755 chr3L 3051985 3052007 pogo 10 260 6.5 2.0 4.2 1.9 284 chr3L 3051723 3` UTR CG32485 + chr3L 3051865 intergenic CG32485 + chr3L 3052007 intergenic CG32485 + chr3L_10_3050001 chr3L_3050001 RAL-443 1497 chr3L 3061299 3061313 chr3L 3069866 3069880 Tirant 4 8579 1.0 1.5 1.2 1.8 8581 chr3L 3061299 intron CG32486 - chr3L 3065590 intron CG32486 - chr3L 3069880 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-443 1498 chr3L 3246862 3246901 chr3L 3246964 3247010 7 105 0.0 6.0 3.0 1.8 148 chr3L 3246862 intergenic not near genes chr3L 3246936 intergenic not near genes chr3L 3247010 intergenic not near genes chr3L_7_3245001 chr3L_3245001 RAL-443 1499 chr3L 3252319 3252373 chr3L 3252415 3252469 10 92 4.5 3.5 4.0 2.0 150 chr3L 3252319 5` UTR CR43626 + chr3L 3252394 5` UTR CR43626 + chr3L 3252469 5` UTR CR43626 + chr3L_10_3250001 chr3L_3250001 RAL-443 1500 chr3L 3259803 3259833 chr3L 3259919 3259953 12 118 8.0 5.5 6.8 1.5 150 chr3L 3259803 intron ckd + chr3L 3259878 intron ckd + chr3L 3259953 intron ckd + chr3L_12_3255001 chr3L_3255001 RAL-443 1501 chr3L 3263791 3263811 chr3L 3263889 3263904 10 97 0.0 8.5 4.2 1.9 113 chr3L 3263791 intron ckd + chr3L 3263848 intron ckd + chr3L 3263904 intron ckd + chr3L_10_3260001 chr3L_3260001 RAL-443 1502 chr3L 3281430 3281466 chr3L 3281934 3281982 Doc 5 509 3.0 6.5 4.8 0.9 552 chr3L 3281430 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281982 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-443 1503 chr3L 3317511 3317566 chr3L 3317610 3317665 18 96 1.5 3.0 2.2 5.6 154 chr3L 3317511 intergenic Drsl5 + chr3L 3317588 intergenic PIG-C -,Drsl5 + chr3L 3317665 intergenic PIG-C - chr3L_18_3315001 chr3L_3315001 RAL-443 1504 chr3L 3436275 3436316 chr3L 3436369 3436415 12 98 2.5 4.5 3.5 2.7 140 chr3L 3436275 intron eIF5B - chr3L 3436345 intron eIF5B - chr3L 3436415 intron eIF5B - chr3L_12_3435001 chr3L_3435001 RAL-443 1505 chr3L 3439565 3439599 chr3L 3439667 3439691 12 102 2.5 2.0 2.2 3.8 126 chr3L 3439565 intron eIF5B - chr3L 3439628 intron eIF5B - chr3L 3439691 intron eIF5B - chr3L_12_3435001 chr3L_3435001 RAL-443 1506 chr3L 3450591 3450625 chr3L 3450692 3450730 12 100 0.0 7.0 3.5 2.7 139 chr3L 3450591 intron eIF5B - chr3L 3450660 intron eIF5B - chr3L 3450730 intron eIF5B - chr3L_12_3450001 chr3L_3450001 RAL-443 1507 chr3L 3470138 3470186 chr3L 3470234 3470255 12 94 1.0 5.5 3.2 2.9 117 chr3L 3470138 intron CG14971 - chr3L 3470196 intron CG14971 - chr3L 3470255 intron CG14971 - chr3L_12_3470001 chr3L_3470001 RAL-443 1508 chr3L 3475075 3475097 chr3L 3475526 3475555 jockey 8 458 5.5 5.0 5.2 1.3 480 chr3L 3475075 intron CG42324 + chr3L 3475315 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-443 1509 chr3L 3475098 3475107 chr3L 3475525 3475564 jockey 4 443 4.0 5.0 4.5 0.7 466 chr3L 3475098 intron CG42324 + chr3L 3475331 intron CG42324 + chr3L 3475564 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-443 1510 chr3L 3494176 3494204 chr3L 3494273 3494301 10 96 4.0 5.5 4.8 1.7 125 chr3L 3494176 intron CG42324 + chr3L 3494238 intron CG42324 + chr3L 3494301 intron CG42324 + chr3L_10_3490001 chr3L_3490001 RAL-443 1511 chr3L 3503977 3503982 chr3L 3504091 3504109 7 124 0.0 5.5 2.8 1.8 132 chr3L 3503977 intron CG42324 + chr3L 3504043 intron CG42324 + chr3L 3504109 intron CG42324 + chr3L_7_3500001 chr3L_3500001 RAL-443 1512 chr3L 3517988 3518020 chr3L 3518090 3518122 4 98 2.5 1.5 2.0 1.3 134 chr3L 3517988 intron Eip63E + chr3L 3518055 intron Eip63E + chr3L 3518122 intron Eip63E + chr3L_4_3515001 chr3L_3515001 RAL-443 1513 chr3L 3573151 3573173 chr3L 3573253 3573276 5 103 10.0 6.0 8.0 0.6 125 chr3L 3573151 intron Eip63E + chr3L 3573214 intron Eip63E + chr3L 3573276 intron Eip63E + chr3L_5_3570001 chr3L_3570001 RAL-443 1514 chr3L 3573175 3573188 chr3L 3573252 3573270 6 86 7.0 5.5 6.2 0.8 95 chr3L 3573175 intron Eip63E + chr3L 3573222 intron Eip63E + chr3L 3573270 intron Eip63E + chr3L_6_3570001 chr3L_3570001 RAL-443 1515 chr3L 3585598 3585626 chr3L 3585695 3585738 8 107 0.5 2.0 1.2 3.6 140 chr3L 3585598 intron Eip63E + chr3L 3585668 intron Eip63E + chr3L 3585738 intron Eip63E + chr3L_8_3585001 chr3L_3585001 RAL-443 1516 chr3L 3601279 3601330 chr3L 3606610 3606661 copia 17 5329 3.0 5.0 4.0 3.4 5382 chr3L 3601279 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606661 intron Eip63E + chr3L_17_3600001 chr3L_3600001 RAL-443 1517 chr3L 3627173 3627217 chr3L 3627277 3627320 13 103 4.5 5.0 4.8 2.2 147 chr3L 3627173 intron dar1 + chr3L 3627246 intron dar1 + chr3L 3627320 intron dar1 + chr3L_13_3625001 chr3L_3625001 RAL-443 1518 chr3L 3642141 3642189 chr3L 3642267 3642315 16 123 3.5 9.5 6.5 2.1 174 chr3L 3642141 intron dar1 + chr3L 3642228 intron dar1 + chr3L 3642315 intron dar1 + chr3L_16_3640001 chr3L_3640001 RAL-443 1519 chr3L 3709448 3709453 chr3L 3709550 3709555 4 102 4.0 0.0 2.0 1.3 107 chr3L 3709448 intergenic CR45675 + chr3L 3709502 intergenic not near genes chr3L 3709555 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-443 1520 chr3L 3763739 3763762 chr3L 3763838 3763843 7 97 4.5 0.5 2.5 2.0 104 chr3L 3763739 intron CG32264 - chr3L 3763791 intron CG32264 - chr3L 3763843 intron CG32264 - chr3L_7_3760001 chr3L_3760001 RAL-443 1521 chr3L 3766719 3766758 chr3L 3766825 3766852 11 103 2.0 0.0 1.0 5.5 133 chr3L 3766719 intron CG32264 - chr3L 3766786 intron CG32264 - chr3L 3766852 intron CG32264 - chr3L_11_3765001 chr3L_3765001 RAL-443 1522 chr3L 3783251 3783284 chr3L 3783347 3783354 5 91 6.5 3.0 4.8 0.9 103 chr3L 3783251 intron CG32264 - chr3L 3783302 intron CG32264 - chr3L 3783354 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-443 1523 chr3L 3833722 3833768 chr3L 3833983 3834029 pogo 12 261 2.5 2.0 2.2 3.8 307 chr3L 3833722 intron enc + chr3L 3833876 intron enc + chr3L 3834029 intron enc + chr3L_12_3830001 chr3L_3830001 RAL-443 1524 chr3L 3869017 3869027 chr3L 3869127 3869128 5 107 10.0 5.5 7.8 0.6 111 chr3L 3869017 intergenic not near genes chr3L 3869072 intergenic not near genes chr3L 3869128 intergenic not near genes chr3L_5_3865001 chr3L_3865001 RAL-443 1525 chr3L 3869028 3869064 chr3L 3869121 3869148 20 102 4.5 5.5 5.0 3.3 120 chr3L 3869028 intergenic not near genes chr3L 3869088 intergenic not near genes chr3L 3869148 intergenic not near genes chr3L_20_3865001 chr3L_3865001 RAL-443 1526 chr3L 3877440 3877467 chr3L 3877583 3877610 8 142 0.0 5.0 2.5 2.3 170 chr3L 3877440 intergenic not near genes chr3L 3877525 intergenic not near genes chr3L 3877610 intergenic not near genes chr3L_8_3875001 chr3L_3875001 RAL-443 1527 chr3L 3889116 3889147 chr3L 3889219 3889249 12 103 4.0 3.0 3.5 2.7 133 chr3L 3889116 intergenic not near genes chr3L 3889182 intergenic not near genes chr3L 3889249 intergenic not near genes chr3L_12_3885001 chr3L_3885001 RAL-443 1528 chr3L 3912797 3912810 chr3L 3912894 3912922 5 105 8.0 8.0 8.0 0.6 125 chr3L 3912797 intron Eip63F-1 - chr3L 3912860 intron Eip63F-1 - chr3L 3912922 intron Eip63F-1 - chr3L_5_3910001 chr3L_3910001 RAL-443 1529 chr3L 4015719 4015762 chr3L 4015822 4015865 9 101 8.0 8.5 8.2 1.0 146 chr3L 4015719 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015865 intergenic not near genes chr3L_9_4015001 chr3L_4015001 RAL-443 1530 chr3L 4048408 4048444 chr3L 4048520 4048556 8 111 11.0 9.5 10.2 0.7 148 chr3L 4048408 intron CG1136 + chr3L 4048482 intron CG1136 + chr3L 4048556 intron CG1136 + chr3L_8_4045001 chr3L_4045001 RAL-443 1531 chr3L 4146802 4146837 chr3L 4146904 4146939 19 102 0.0 4.0 2.0 6.3 137 chr3L 4146802 intergenic not near genes chr3L 4146870 intergenic not near genes chr3L 4146939 intergenic not near genes chr3L_19_4145001 chr3L_4145001 RAL-443 1532 chr3L 4195139 4195168 chr3L 4195262 4195291 5 123 3.5 9.0 6.2 0.7 152 chr3L 4195139 exon CG43367 + chr3L 4195215 intron CG43367 + chr3L 4195291 intron CG43367 + chr3L_5_4195001 chr3L_4195001 RAL-443 1533 chr3L 4267437 4267489 chr3L 4267539 4267591 27 100 4.0 2.5 3.2 6.4 154 chr3L 4267437 intron,intron CG1273 +,CG33764 - chr3L 4267514 intron CG1273 + chr3L 4267591 intron CG1273 + chr3L_27_4265001 chr3L_4265001 RAL-443 1534 chr3L 4341330 4341335 chr3L 21448026 21448026 10 17106694 18.5 26.0 22.2 0.4 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_10_12890001 chr3L_12890001 RAL-443 1535 chr3L 4342392 4342439 chr3L 4342491 4342527 9 90 3.0 7.5 5.2 1.5 135 chr3L 4342392 intron Cip4 - chr3L 4342460 intron Cip4 - chr3L 4342527 intron Cip4 - chr3L_9_4340001 chr3L_4340001 RAL-443 1536 chr3L 4364202 4364203 chr3L 4364303 4364312 4 107 4.0 9.5 6.8 0.5 110 chr3L 4364202 intergenic Cip4 -,mRpS6 + chr3L 4364257 intergenic Cip4 -,mRpS6 + chr3L 4364312 intergenic Cip4 -,mRpS6 + chr3L_4_4360001 chr3L_4360001 RAL-443 1537 chr3L 4364213 4364234 chr3L 4364294 4364343 9 102 2.5 7.0 4.8 1.6 130 chr3L 4364213 intergenic Cip4 -,mRpS6 + chr3L 4364278 intergenic Cip4 -,mRpS6 + chr3L 4364343 intergenic mRpS6 +,Cip4 - chr3L_9_4360001 chr3L_4360001 RAL-443 1538 chr3L 4469412 4469425 chr3L 4469535 4469549 5 124 0.0 7.0 3.5 1.1 137 chr3L 4469412 intergenic not near genes chr3L 4469480 intergenic not near genes chr3L 4469549 intergenic CG32249 + chr3L_5_4465001 chr3L_4465001 RAL-443 1539 chr3L 4615889 4615925 chr3L 4615989 4616021 19 109 4.0 9.5 6.8 2.4 132 chr3L 4615889 intron Src64B - chr3L 4615955 intron Src64B - chr3L 4616021 intron Src64B - chr3L_19_4615001 chr3L_4615001 RAL-443 1540 chr3L 4748691 4748723 chr3L 4748797 4748834 6 107 5.5 1.5 3.5 1.3 143 chr3L 4748691 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748834 intron RhoGEF64C + chr3L_6_4745001 chr3L_4745001 RAL-443 1541 chr3L 4754754 4754774 chr3L 4754842 4754850 8 91 4.0 6.0 5.0 1.3 96 chr3L 4754754 intron RhoGEF64C + chr3L 4754802 intron RhoGEF64C + chr3L 4754850 intron RhoGEF64C + chr3L_8_4750001 chr3L_4750001 RAL-443 1542 chr3L 4837879 4837921 chr3L 4837967 4838020 18 96 6.0 6.0 6.0 2.6 141 chr3L 4837879 3` UTR CG13707 - chr3L 4837950 3` UTR CG13707 - chr3L 4838020 3` UTR CG13707 - chr3L_18_4835001 chr3L_4835001 RAL-443 1543 chr3L 4901111 4901130 chr3L 4907321 4907340 diver 11 6209 11.5 6.0 8.8 1.1 6229 chr3L 4901111 intergenic CG13704 + chr3L 4904226 intergenic not near genes chr3L 4907340 intergenic not near genes chr3L_11_4900001 chr3L_4900001 RAL-443 1544 chr3L 4901132 4901141 chr3L 4907320 4907344 diver 5 6201 10.0 6.0 8.0 0.6 6212 chr3L 4901132 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-443 1545 chr3L 5034136 5034173 chr3L 5043308 5043345 roo 4 9170 5.0 0.0 2.5 1.1 9209 chr3L 5034136 intron Con - chr3L 5038740 intron Con - chr3L 5043345 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-443 1546 chr3L 5045465 5045479 chr3L 5050241 5050280 Doc 6 4790 12.0 5.0 8.5 0.6 4815 chr3L 5045465 intron Con - chr3L 5047872 intron Con - chr3L 5050280 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-443 1547 chr3L 5101192 5101226 chr3L 5101279 5101326 13 97 4.5 4.5 4.5 2.4 134 chr3L 5101192 intergenic not near genes chr3L 5101259 intergenic not near genes chr3L 5101326 intergenic not near genes chr3L_13_5100001 chr3L_5100001 RAL-443 1548 chr3L 5103593 5103615 chr3L 5103693 5103714 6 100 9.0 0.0 4.5 1.1 121 chr3L 5103593 intergenic not near genes chr3L 5103654 intergenic not near genes chr3L 5103714 intergenic not near genes chr3L_6_5100001 chr3L_5100001 RAL-443 1549 chr3L 5104463 5104502 chr3L 5124617 5124656 14 20152 5.5 2.5 4.0 2.8 20193 chr3L 5104463 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124656 intergenic not near genes chr3L_14_5110001 chr3L_5110001 RAL-443 1550 chr3L 5251848 5251871 chr3L 5251942 5251949 7 94 0.0 6.0 3.0 1.8 101 chr3L 5251848 intron shep - chr3L 5251898 intron shep - chr3L 5251949 intron shep - chr3L_7_5250001 chr3L_5250001 RAL-443 1551 chr3L 5261149 5261182 chr3L 5261248 5261278 20 97 7.5 8.5 8.0 2.2 129 chr3L 5261149 intron shep - chr3L 5261214 intron shep - chr3L 5261278 intron shep - chr3L_20_5260001 chr3L_5260001 RAL-443 1552 chr3L 5269318 5269425 chr3L 5269693 5269710 15 329 0.5 3.0 1.8 5.4 392 chr3L 5269318 intron shep - chr3L 5269514 intron shep - chr3L 5269710 intron shep - chr3L_15_5265001 chr3L_5265001 RAL-443 1553 chr3L 5299152 5299173 chr3L 5306598 5306614 Quasimodo 6 7445 3.5 0.0 1.8 2.1 7462 chr3L 5299152 intergenic not near genes chr3L 5302883 intergenic not near genes chr3L 5306614 intergenic not near genes chr3L_6_5300001 chr3L_5300001 RAL-443 1554 chr3L 5306652 5306671 chr3L 5306762 5306781 6 108 0.0 1.0 0.5 4.0 129 chr3L 5306652 intergenic not near genes chr3L 5306716 intergenic not near genes chr3L 5306781 intergenic not near genes chr3L_6_5305001 chr3L_5305001 RAL-443 1555 chr3L 5396472 5396499 chr3L 5396559 5396606 7 98 0.0 3.0 1.5 2.8 134 chr3L 5396472 intergenic not near genes chr3L 5396539 intergenic not near genes chr3L 5396606 intergenic not near genes chr3L_7_5395001 chr3L_5395001 RAL-443 1556 chr3L 5498372 5498432 chr3L 5498477 5498492 5 89 2.5 5.0 3.8 1.0 120 chr3L 5498372 exon blanks - chr3L 5498432 exon blanks - chr3L 5498492 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-443 1557 chr3L 5519425 5519433 chr3L 5519510 5519519 4 92 0.5 5.0 2.8 1.1 94 chr3L 5519425 intron Lkr - chr3L 5519472 intron Lkr - chr3L 5519519 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-443 1558 chr3L 5537142 5537154 chr3L 5537269 5537281 4 127 10.0 5.5 7.8 0.5 139 chr3L 5537142 intergenic not near genes chr3L 5537212 intergenic not near genes chr3L 5537281 intergenic not near genes chr3L_4_5535001 chr3L_5535001 RAL-443 1559 chr3L 5537156 5537183 chr3L 5537268 5537305 8 113 3.5 5.0 4.2 1.5 149 chr3L 5537156 intergenic not near genes chr3L 5537230 intergenic not near genes chr3L 5537305 intergenic not near genes chr3L_8_5535001 chr3L_5535001 RAL-443 1560 chr3L 5537715 5537734 chr3L 5538063 5538096 jockey 4 358 9.5 5.5 7.5 0.5 381 chr3L 5537715 intergenic not near genes chr3L 5537906 intergenic not near genes chr3L 5538096 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-443 1561 chr3L 5537735 5537748 chr3L 5538062 5538095 jockey 7 340 6.0 5.0 5.5 1.1 360 chr3L 5537735 intergenic not near genes chr3L 5537915 intergenic CG10625 - chr3L 5538095 intergenic CG10625 - chr3L_7_5535001 chr3L_5535001 RAL-443 1562 chr3L 5581986 5582016 chr3L 5582082 5582085 8 93 6.0 0.5 3.2 1.9 99 chr3L 5581986 intergenic not near genes chr3L 5582036 intergenic not near genes chr3L 5582085 intergenic not near genes chr3L_8_5580001 chr3L_5580001 RAL-443 1563 chr3L 5666266 5666318 chr3L 5666378 5666422 4 110 0.0 1.5 0.8 2.2 156 chr3L 5666266 intron sif + chr3L 5666344 intron sif + chr3L 5666422 intron sif + chr3L_4_5665001 chr3L_5665001 RAL-443 1564 chr3L 5908058 5908103 chr3L 5908157 5908203 21 99 1.0 2.0 1.5 8.4 145 chr3L 5908058 intron CG13288 + chr3L 5908130 intron CG13288 + chr3L 5908203 intron CG13288 + chr3L_21_5905001 chr3L_5905001 RAL-443 1565 chr3L 5910012 5910032 chr3L 5910273 5910292 pogo 12 260 17.0 0.0 8.5 1.3 280 chr3L 5910012 intron CG13288 + chr3L 5910152 intron CG13288 + chr3L 5910292 intron CG13288 + chr3L_12_5910001 chr3L_5910001 RAL-443 1566 chr3L 5926320 5926347 chr3L 5926504 5926557 BS 9 197 2.5 3.0 2.8 2.4 237 chr3L 5926320 intron Vap-33B + chr3L 5926438 intron Vap-33B + chr3L 5926557 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-443 1567 chr3L 5996385 5996426 chr3L 5996689 5996720 11 302 4.5 4.0 4.2 2.1 335 chr3L 5996385 intergenic not near genes chr3L 5996552 intergenic not near genes chr3L 5996720 intergenic PVRAP + chr3L_11_5995001 chr3L_5995001 RAL-443 1568 chr3L 6001664 6001706 chr3L 6004384 6004426 jockey 8 2720 9.0 1.5 5.2 1.3 2762 chr3L 6001664 intron PVRAP + chr3L 6003045 intron PVRAP + chr3L 6004426 intron PVRAP + chr3L_8_6000001 chr3L_6000001 RAL-443 1569 chr3L 6040351 6040393 chr3L 6042727 6042768 Doc 21 2374 6.5 7.0 6.8 2.7 2417 chr3L 6040351 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042768 intergenic not near genes chr3L_21_6040001 chr3L_6040001 RAL-443 1570 chr3L 6052126 6052147 chr3L 6052232 6052253 4 101 0.0 5.0 2.5 1.1 127 chr3L 6052126 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052190 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052253 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-443 1571 chr3L 6154484 6154534 chr3L 6154590 6154641 20 103 7.5 4.5 6.0 2.9 157 chr3L 6154484 intergenic CR45421 - chr3L 6154562 intergenic CR45421 - chr3L 6154641 intergenic CR45421 - chr3L_20_6150001 chr3L_6150001 RAL-443 1572 chr3L 6155674 6155712 chr3L 6155780 6155797 12 102 8.0 5.0 6.5 1.6 123 chr3L 6155674 intergenic CR45421 - chr3L 6155736 intergenic not near genes chr3L 6155797 intergenic not near genes chr3L_12_6155001 chr3L_6155001 RAL-443 1573 chr3L 6220897 6220946 chr3L 6230069 6230118 roo 14 9170 6.0 7.0 6.5 1.9 9221 chr3L 6220897 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230118 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-443 1574 chr3L 6246250 6246298 chr3L 6246347 6246396 17 95 4.5 5.0 4.8 2.9 146 chr3L 6246250 3` UTR Best2 - chr3L 6246323 3` UTR Best2 - chr3L 6246396 3` UTR Best2 - chr3L_17_6245001 chr3L_6245001 RAL-443 1575 chr3L 6278024 6278240 chr3L 6278120 6278299 13 89 4.0 2.0 3.0 3.2 275 chr3L 6278024 intergenic not near genes chr3L 6278162 intergenic not near genes chr3L 6278299 intergenic not near genes chr3L_13_6275001 chr3L_6275001 RAL-443 1576 chr3L 6334992 6335034 chr3L 6335483 6335525 297 9 490 3.0 7.5 5.2 1.5 533 chr3L 6334992 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335525 intron CG13300 - chr3L_9_6335001 chr3L_6335001 RAL-443 1577 chr3L 6358609 6358647 chr3L 6358706 6358744 18 96 3.5 5.5 4.5 3.3 135 chr3L 6358609 intergenic not near genes chr3L 6358676 intergenic not near genes chr3L 6358744 intergenic not near genes chr3L_18_6355001 chr3L_6355001 RAL-443 1578 chr3L 6405645 6405686 chr3L 6432129 6432170 roo 13 26484 3.5 5.5 4.5 2.4 26525 chr3L 6405645 intron CG42747 + chr3L 6418908 intron CG42747 + chr3L 6432170 intron CG42747 + chr3L_13_6415001 chr3L_6415001 RAL-443 1579 chr3L 6479131 6479144 chr3L 6479221 6479245 5 98 6.5 4.0 5.2 0.8 114 chr3L 6479131 intron CG42747 + chr3L 6479188 intron CG42747 + chr3L 6479245 intron CG42747 + chr3L_5_6475001 chr3L_6475001 RAL-443 1580 chr3L 6479145 6479165 chr3L 6479220 6479241 7 83 2.0 4.0 3.0 1.8 96 chr3L 6479145 intron CG42747 + chr3L 6479193 intron CG42747 + chr3L 6479241 intron CG42747 + chr3L_7_6475001 chr3L_6475001 RAL-443 1581 chr3L 6555739 6555859 chr3L 6555839 6555957 20 96 0.0 0.0 0.0 20.0 218 chr3L 6555739 intron CG18769 + chr3L 6555848 intron CG18769 + chr3L 6555957 intron CG18769 + chr3L_20_6555001 chr3L_6555001 RAL-443 1582 chr3L 6562834 6562843 chr3L 6562924 6562943 9 96 18.0 10.0 14.0 0.6 109 chr3L 6562834 intron CG18769 + chr3L 6562888 intron CG18769 + chr3L 6562943 intron CG18769 + chr3L_9_6560001 chr3L_6560001 RAL-443 1583 chr3L 6562850 6562863 chr3L 6562923 6562927 8 89 8.0 9.5 8.8 0.8 77 chr3L 6562850 intron CG18769 + chr3L 6562888 intron CG18769 + chr3L 6562927 intron CG18769 + chr3L_8_6560001 chr3L_6560001 RAL-443 1584 chr3L 6582459 6582492 chr3L 6582568 6582614 4 114 4.5 5.5 5.0 0.7 155 chr3L 6582459 intron,intron CG18769 +,jv - chr3L 6582536 intron,intron CG18769 +,jv - chr3L 6582614 intron,intron CG18769 +,jv - chr3L_4_6580001 chr3L_6580001 RAL-443 1585 chr3L 6604296 6604300 chr3L 6604350 6604397 5 88 2.0 7.0 4.5 0.9 101 chr3L 6604296 intron CG8368 + chr3L 6604346 intron CG8368 + chr3L 6604397 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-443 1586 chr3L 6620508 6620545 chr3L 6621052 6621054 Rt1c 12 540 2.5 5.0 3.8 2.5 546 chr3L 6620508 intergenic not near genes chr3L 6620781 intergenic not near genes chr3L 6621054 intergenic not near genes chr3L_12_6620001 chr3L_6620001 RAL-443 1587 chr3L 6625392 6625440 chr3L 6625574 6625623 15 180 3.5 5.5 4.5 2.7 231 chr3L 6625392 intron GluRIA + chr3L 6625508 intron GluRIA + chr3L 6625623 intron GluRIA + chr3L_15_6625001 chr3L_6625001 RAL-443 1588 chr3L 6642865 6642879 chr3L 6642954 6642977 7 98 0.5 0.0 0.2 5.8 112 chr3L 6642865 intergenic CR45239 + chr3L 6642921 intergenic CR45239 + chr3L 6642977 intergenic CR45239 + chr3L_7_6640001 chr3L_6640001 RAL-443 1589 chr3L 6659308 6659355 chr3L 6659405 6659452 24 94 4.5 5.0 4.8 4.1 144 chr3L 6659308 intergenic not near genes chr3L 6659380 intergenic not near genes chr3L 6659452 intergenic not near genes chr3L_24_6655001 chr3L_6655001 RAL-443 1590 chr3L 6855910 6855956 chr3L 6860703 6860721 Doc 5 4793 1.5 0.5 1.0 2.5 4811 chr3L 6855910 intergenic not near genes chr3L 6858316 intergenic not near genes chr3L 6860721 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-443 1591 chr3L 6868702 6868739 chr3L 6868800 6868837 6 92 1.5 7.5 4.5 1.1 135 chr3L 6868702 intergenic not near genes chr3L 6868770 intergenic not near genes chr3L 6868837 intergenic not near genes chr3L_6_6865001 chr3L_6865001 RAL-443 1592 chr3L 6887502 6887536 chr3L 6895007 6895048 roo 6 7509 5.0 1.5 3.2 1.4 7546 chr3L 6887502 intergenic not near genes chr3L 6891275 intergenic not near genes chr3L 6895048 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-443 1593 chr3L 6900857 6900902 chr3L 6900953 6900998 9 95 0.5 9.0 4.8 1.6 141 chr3L 6900857 intergenic not near genes chr3L 6900928 intergenic not near genes chr3L 6900998 intergenic not near genes chr3L_9_6900001 chr3L_6900001 RAL-443 1594 chr3L 6934332 6934360 chr3L 6934451 6934491 8 128 3.5 3.0 3.2 1.9 159 chr3L 6934332 exon CG14820 + chr3L 6934412 intron CG14820 + chr3L 6934491 exon CG14820 + chr3L_8_6930001 chr3L_6930001 RAL-443 1595 chr3L 6990700 6990739 chr3L 6990799 6990809 9 96 5.0 2.5 3.8 1.9 109 chr3L 6990700 5` UTR bin + chr3L 6990754 5` UTR bin + chr3L 6990809 5` UTR bin + chr3L_9_6990001 chr3L_6990001 RAL-443 1596 chr3L 6994894 6994912 chr3L 6995500 6995542 BS 6 626 2.5 0.0 1.2 2.7 648 chr3L 6994894 intergenic bin + chr3L 6995218 intergenic not near genes chr3L 6995542 intergenic not near genes chr3L_6_6995001 chr3L_6995001 RAL-443 1597 chr3L 7013438 7013452 chr3L 7013546 7013550 4 106 8.5 0.0 4.2 0.8 112 chr3L 7013438 intron Mp + chr3L 7013494 intron Mp + chr3L 7013550 intron Mp + chr3L_4_7010001 chr3L_7010001 RAL-443 1598 chr3L 7022283 7022325 chr3L 7022401 7022443 8 110 7.5 2.0 4.8 1.4 160 chr3L 7022283 intron Mp + chr3L 7022363 intron Mp + chr3L 7022443 intron Mp + chr3L_8_7020001 chr3L_7020001 RAL-443 1599 chr3L 7041904 7041920 chr3L 7042001 7042016 10 96 5.0 3.5 4.2 1.9 112 chr3L 7041904 intron Mp + chr3L 7041960 intron Mp + chr3L 7042016 intron Mp + chr3L_10_7040001 chr3L_7040001 RAL-443 1600 chr3L 7079594 7079604 chr3L 7079691 7079701 7 97 6.5 3.0 4.8 1.2 107 chr3L 7079594 intergenic not near genes chr3L 7079648 intergenic not near genes chr3L 7079701 intergenic not near genes chr3L_7_7075001 chr3L_7075001 RAL-443 1601 chr3L 7079609 7079624 chr3L 7079686 7079721 5 91 5.0 2.5 3.8 1.0 112 chr3L 7079609 intergenic not near genes chr3L 7079665 intergenic not near genes chr3L 7079721 intergenic not near genes chr3L_5_7075001 chr3L_7075001 RAL-443 1602 chr3L 7150869 7150902 chr3L 7150965 7150998 11 91 2.0 4.0 3.0 2.8 129 chr3L 7150869 intron corn - chr3L 7150934 intron corn - chr3L 7150998 intron corn - chr3L_11_7150001 chr3L_7150001 RAL-443 1603 chr3L 7244940 7244956 chr3L 7245027 7245037 8 92 7.0 0.5 3.8 1.7 97 chr3L 7244940 exon mei-P22 + chr3L 7244988 exon mei-P22 + chr3L 7245037 exon mei-P22 + chr3L_8_7240001 chr3L_7240001 RAL-443 1604 chr3L 7277089 7277139 chr3L 7277211 7277261 16 120 2.0 3.0 2.5 4.6 172 chr3L 7277089 exon unc-13-4A - chr3L 7277175 intron unc-13-4A - chr3L 7277261 intron unc-13-4A - chr3L_16_7275001 chr3L_7275001 RAL-443 1605 chr3L 7285441 7285469 chr3L 7285539 7285562 8 94 8.0 3.0 5.5 1.2 121 chr3L 7285441 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285562 intron unc-13-4A - chr3L_8_7285001 chr3L_7285001 RAL-443 1606 chr3L 7355684 7355684 chr3L 7362675 7362692 4 6998 19.5 19.0 19.2 0.2 7008 chr3L 7355684 exon CTCF - chr3L 7359188 exon pst - chr3L 7362692 exon Sec63 + chr3L_4_7355001 chr3L_7355001 RAL-443 1607 chr3L 7375909 7375942 chr3L 7376000 7376029 10 90 9.0 5.5 7.2 1.2 120 chr3L 7375909 intron SMSr - chr3L 7375969 intron SMSr - chr3L 7376029 intron SMSr - chr3L_10_7375001 chr3L_7375001 RAL-443 1608 chr3L 7377302 7377348 chr3L 7380427 7380463 297 13 3122 3.5 6.0 4.8 2.2 3161 chr3L 7377302 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380463 intron SMSr - chr3L_13_7375001 chr3L_7375001 RAL-443 1609 chr3L 7444005 7444024 chr3L 7444122 7444142 12 118 6.5 0.0 3.2 2.9 137 chr3L 7444005 intron CG42458 + chr3L 7444074 intron CG42458 + chr3L 7444142 intron CG42458 + chr3L_12_7440001 chr3L_7440001 RAL-443 1610 chr3L 7498702 7498746 chr3L 7503528 7503572 F-element 15 4825 3.5 5.0 4.2 2.9 4870 chr3L 7498702 5` UTR CG8539 - chr3L 7501137 intergenic not near genes chr3L 7503572 intergenic not near genes chr3L_15_7500001 chr3L_7500001 RAL-443 1611 chr3L 7505398 7505415 chr3L 7505491 7505511 5 95 4.5 4.0 4.2 1.0 113 chr3L 7505398 intergenic CG7548 - chr3L 7505454 intergenic CG7548 - chr3L 7505511 intergenic CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-443 1612 chr3L 7524143 7524174 chr3L 7524230 7524271 11 97 3.0 0.0 1.5 4.4 128 chr3L 7524143 intron ltl + chr3L 7524207 intron ltl + chr3L 7524271 intron ltl + chr3L_11_7520001 chr3L_7520001 RAL-443 1613 chr3L 7727144 7727174 chr3L 7727245 7727275 8 101 6.0 9.5 7.8 0.9 131 chr3L 7727144 intron CG32373 + chr3L 7727210 intron CG32373 + chr3L 7727275 intron CG32373 + chr3L_8_7725001 chr3L_7725001 RAL-443 1614 chr3L 7793696 7793739 chr3L 7800768 7800800 297 17 7070 7.0 7.5 7.2 2.1 7104 chr3L 7793696 intron CG32369 - chr3L 7797248 intron CG32369 - chr3L 7800800 intron CG32369 - chr3L_17_7795001 chr3L_7795001 RAL-443 1615 chr3L 7876082 7876125 chr3L 7876181 7876224 7 99 0.0 0.0 0.0 7.0 142 chr3L 7876082 intron CG32365 + chr3L 7876153 intron CG32365 + chr3L 7876224 intron CG32365 + chr3L_7_7875001 chr3L_7875001 RAL-443 1616 chr3L 7886507 7886545 chr3L 7889035 7889082 Stalker4 11 2531 0.5 4.5 2.5 3.1 2575 chr3L 7886507 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889082 intron CG32365 + chr3L_11_7885001 chr3L_7885001 RAL-443 1617 chr3L 7916812 7916830 chr3L 7926003 7926021 roo 10 9191 15.0 9.0 12.0 0.8 9209 chr3L 7916812 3` UTR syd - chr3L 7921416 intron syd - chr3L 7926021 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-443 1618 chr3L 7916834 7916853 chr3L 7926000 7926044 roo 9 9186 11.5 8.5 10.0 0.8 9210 chr3L 7916834 3` UTR syd - chr3L 7921439 intron syd - chr3L 7926044 3` UTR syd - chr3L_9_7920001 chr3L_7920001 RAL-443 1619 chr3L 7939439 7939470 chr3L 7939541 7939572 17 100 6.5 3.5 5.0 2.8 133 chr3L 7939439 intergenic not near genes chr3L 7939506 intergenic not near genes chr3L 7939572 intergenic not near genes chr3L_17_7935001 chr3L_7935001 RAL-443 1620 chr3L 7971842 7971879 chr3L 7971930 7971974 12 97 5.0 4.0 4.5 2.2 132 chr3L 7971842 exon RNaseX25 + chr3L 7971908 3` UTR RNaseX25 + chr3L 7971974 3` UTR RNaseX25 + chr3L_12_7970001 chr3L_7970001 RAL-443 1621 chr3L 7982959 7983008 chr3L 7983181 7983231 11 214 1.0 3.0 2.0 3.7 272 chr3L 7982959 intron nmo + chr3L 7983095 intron nmo + chr3L 7983231 intron nmo + chr3L_11_7980001 chr3L_7980001 RAL-443 1622 chr3L 7985352 7985396 chr3L 7987700 7987709 NOF 14 2345 3.5 3.5 3.5 3.1 2357 chr3L 7985352 intron nmo + chr3L 7986530 intron nmo + chr3L 7987709 intron nmo + chr3L_14_7985001 chr3L_7985001 RAL-443 1623 chr3L 7995942 7995953 chr3L 7996069 7996081 6 128 6.5 0.0 3.2 1.4 139 chr3L 7995942 intron nmo + chr3L 7996012 intron nmo + chr3L 7996081 intron nmo + chr3L_6_7995001 chr3L_7995001 RAL-443 1624 chr3L 8064585 8064632 chr3L 8064812 8064868 9 230 1.5 0.0 0.8 5.0 283 chr3L 8064585 intron Ect4 + chr3L 8064726 intron Ect4 + chr3L 8064868 intron Ect4 + chr3L_9_8060001 chr3L_8060001 RAL-443 1625 chr3L 8214737 8214753 chr3L 8214824 8214859 7 99 2.5 10.0 6.2 1.0 122 chr3L 8214737 intergenic not near genes chr3L 8214798 intergenic CG8012 + chr3L 8214859 intergenic CG8012 + chr3L_7_8210001 chr3L_8210001 RAL-443 1626 chr3L 8226694 8226739 chr3L 8226813 8226827 10 116 2.0 0.0 1.0 5.0 133 chr3L 8226694 intergenic not near genes chr3L 8226760 intergenic not near genes chr3L 8226827 intergenic not near genes chr3L_10_8225001 chr3L_8225001 RAL-443 1627 chr3L 8243455 8243482 chr3L 8243547 8243551 6 91 2.5 7.0 4.8 1.0 96 chr3L 8243455 intron Dscam4 + chr3L 8243503 intron Dscam4 + chr3L 8243551 intron Dscam4 + chr3L_6_8240001 chr3L_8240001 RAL-443 1628 chr3L 8243802 8243844 chr3L 8243905 8243947 15 100 3.5 5.0 4.2 2.9 145 chr3L 8243802 intron Dscam4 + chr3L 8243874 intron Dscam4 + chr3L 8243947 intron Dscam4 + chr3L_15_8240001 chr3L_8240001 RAL-443 1629 chr3L 8248318 8248328 chr3L 8248396 8248436 4 94 10.5 9.5 10.0 0.4 118 chr3L 8248318 intron Dscam4 + chr3L 8248377 intron Dscam4 + chr3L 8248436 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-443 1630 chr3L 8274818 8274836 chr3L 8274952 8274964 8 131 4.0 0.0 2.0 2.7 146 chr3L 8274818 intron Dscam4 + chr3L 8274891 intron Dscam4 + chr3L 8274964 intron Dscam4 + chr3L_8_8270001 chr3L_8270001 RAL-443 1631 chr3L 8295769 8295824 chr3L 8295947 8296002 17 173 6.5 3.5 5.0 2.8 233 chr3L 8295769 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8296002 intergenic not near genes chr3L_17_8295001 chr3L_8295001 RAL-443 1632 chr3L 8364501 8364536 chr3L 8364612 8364647 13 111 3.5 0.5 2.0 4.3 146 chr3L 8364501 intergenic not near genes chr3L 8364574 intergenic not near genes chr3L 8364647 intergenic not near genes chr3L_13_8360001 chr3L_8360001 RAL-443 1633 chr3L 8443550 8443582 chr3L 8443651 8443683 6 98 4.0 5.5 4.8 1.0 133 chr3L 8443550 3` UTR CG6983 - chr3L 8443616 3` UTR CG6983 - chr3L 8443683 3` UTR CG6983 - chr3L_6_8440001 chr3L_8440001 RAL-443 1634 chr3L 8498302 8498325 chr3L 8505789 8505812 blood 6 7487 2.0 14.5 8.2 0.7 7510 chr3L 8498302 intron CG43163 - chr3L 8502057 intron CG43163 - chr3L 8505812 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-443 1635 chr3L 8651850 8651877 chr3L 8651971 8651998 15 119 0.0 1.0 0.5 10.0 148 chr3L 8651850 intergenic not near genes chr3L 8651924 intergenic not near genes chr3L 8651998 intergenic not near genes chr3L_15_8650001 chr3L_8650001 RAL-443 1636 chr3L 8791259 8791309 chr3L 8796699 8796748 I-element 12 5438 4.5 0.5 2.5 3.4 5489 chr3L 8791259 exon Fhos + chr3L 8794004 intron Fhos + chr3L 8796748 intron Fhos + chr3L_12_8790001 chr3L_8790001 RAL-443 1637 chr3L 8839747 8839755 chr3L 8839856 8839864 6 108 7.5 4.0 5.8 0.9 117 chr3L 8839747 intron dally + chr3L 8839806 intron dally + chr3L 8839864 intron dally + chr3L_6_8835001 chr3L_8835001 RAL-443 1638 chr3L 8959378 8959397 chr3L 8959559 8959570 4 179 2.5 0.5 1.5 1.6 192 chr3L 8959378 intron CG13313 + chr3L 8959474 intron CG13313 + chr3L 8959570 intron CG13313 + chr3L_4_8955001 chr3L_8955001 RAL-443 1639 chr3L 8988712 8988750 chr3L 8988814 8988852 16 100 1.5 9.0 5.2 2.6 140 chr3L 8988712 3` UTR CG5068 + chr3L 8988782 3` UTR CG5068 + chr3L 8988852 3` UTR CG5068 + chr3L_16_8985001 chr3L_8985001 RAL-443 1640 chr3L 9003938 9003953 chr3L 9004042 9004058 6 105 2.5 7.0 4.8 1.0 120 chr3L 9003938 intergenic not near genes chr3L 9003998 intergenic not near genes chr3L 9004058 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-443 1641 chr3L 9003955 9003959 chr3L 9004034 9004064 4 92 2.5 4.0 3.2 1.0 109 chr3L 9003955 intergenic not near genes chr3L 9004010 intergenic not near genes chr3L 9004064 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-443 1642 chr3L 9008650 9008674 chr3L 9008723 9008745 9 82 2.5 4.0 3.2 2.1 95 chr3L 9008650 3` UTR CG5194 - chr3L 9008698 3` UTR CG5194 - chr3L 9008745 3` UTR CG5194 - chr3L_9_9005001 chr3L_9005001 RAL-443 1643 chr3L 9010643 9010682 chr3L 9010734 9010764 10 86 3.0 1.5 2.2 3.1 121 chr3L 9010643 intergenic not near genes chr3L 9010704 intergenic not near genes chr3L 9010764 intergenic not near genes chr3L_10_9010001 chr3L_9010001 RAL-443 1644 chr3L 9013691 9013694 chr3L 18417066 18417066 9 9403374 18.5 16.5 17.5 0.5 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_9_13715001 chr3L_13715001 RAL-443 1645 chr3L 9024491 9024535 chr3L 9024591 9024635 22 95 5.0 8.5 6.8 2.8 144 chr3L 9024491 intergenic not near genes chr3L 9024563 intergenic not near genes chr3L 9024635 intergenic not near genes chr3L_22_9020001 chr3L_9020001 RAL-443 1646 chr3L 9076910 9076956 chr3L 9084490 9084507 412 14 7575 4.0 6.0 5.0 2.3 7597 chr3L 9076910 exon Tequila + chr3L 9080708 intron Tequila + chr3L 9084507 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-443 1647 chr3L 9109755 9109770 chr3L 9110358 9110395 9 619 3.5 5.0 4.2 1.7 640 chr3L 9109755 intron bol - chr3L 9110075 intron bol - chr3L 9110395 intron bol - chr3L_9_9110001 chr3L_9110001 RAL-443 1648 chr3L 9130538 9130582 chr3L 9134317 9134329 412 4 3771 5.5 1.5 3.5 0.9 3791 chr3L 9130538 intergenic bol - chr3L 9132434 intergenic not near genes chr3L 9134329 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-443 1649 chr3L 9164701 9164708 chr3L 9166168 9166195 hobo 4 1482 4.5 1.5 3.0 1.0 1494 chr3L 9164701 intron Rdl - chr3L 9165448 intron Rdl - chr3L 9166195 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-443 1650 chr3L 9164711 9164723 chr3L 9166162 9166199 hobo 4 1469 3.0 1.0 2.0 1.3 1488 chr3L 9164711 intron Rdl - chr3L 9165455 intron Rdl - chr3L 9166199 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-443 1651 chr3L 9219249 9219261 chr3L 9219916 9219952 jockey 4 678 5.0 5.0 5.0 0.7 703 chr3L 9219249 intergenic not near genes chr3L 9219600 intergenic not near genes chr3L 9219952 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-443 1652 chr3L 9237475 9237492 chr3L 9237574 9237591 5 99 8.5 0.0 4.2 1.0 116 chr3L 9237475 intergenic not near genes chr3L 9237533 intergenic not near genes chr3L 9237591 intergenic not near genes chr3L_5_9235001 chr3L_9235001 RAL-443 1653 chr3L 9270598 9270639 chr3L 9278373 9278414 roo 10 7767 7.0 2.0 4.5 1.8 7816 chr3L 9270598 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278414 exon GluRIB + chr3L_10_9270001 chr3L_9270001 RAL-443 1654 chr3L 9312705 9312729 chr3L 9312803 9312826 4 98 7.5 7.5 7.5 0.5 121 chr3L 9312705 intergenic not near genes chr3L 9312766 intergenic not near genes chr3L 9312826 intergenic not near genes chr3L_4_9310001 chr3L_9310001 RAL-443 1655 chr3L 9315604 9315648 chr3L 9315722 9315773 18 119 2.5 3.5 3.0 4.5 169 chr3L 9315604 intergenic not near genes chr3L 9315688 intergenic not near genes chr3L 9315773 intergenic not near genes chr3L_18_9315001 chr3L_9315001 RAL-443 1656 chr3L 9321008 9321058 chr3L 9321111 9321156 9 94 4.5 4.5 4.5 1.6 148 chr3L 9321008 intergenic not near genes chr3L 9321082 intergenic not near genes chr3L 9321156 intergenic not near genes chr3L_9_9320001 chr3L_9320001 RAL-443 1657 chr3L 9348452 9348485 chr3L 9348969 9349007 11 514 2.0 1.0 1.5 4.4 555 chr3L 9348452 intergenic PGRP-LC + chr3L 9348730 intergenic PGRP-LC + chr3L 9349007 intergenic not near genes chr3L_11_9345001 chr3L_9345001 RAL-443 1658 chr3L 9359572 9359621 chr3L 9359678 9359732 13 106 5.5 8.0 6.8 1.7 160 chr3L 9359572 3` UTR CG32039 + chr3L 9359652 3` UTR CG32039 + chr3L 9359732 3` UTR CG32039 + chr3L_13_9355001 chr3L_9355001 RAL-443 1659 chr3L 9434818 9434874 chr3L 9434924 9434933 16 85 2.0 5.5 3.8 3.3 115 chr3L 9434818 intron,exon MTF-1 +,CG42526 - chr3L 9434876 intron,exon MTF-1 +,CG42526 - chr3L 9434933 intron,exon MTF-1 +,CG42526 - chr3L_16_9430001 chr3L_9430001 RAL-443 1660 chr3L 9443512 9443540 chr3L 9445298 9445351 S-element 13 1797 6.5 3.0 4.8 2.2 1839 chr3L 9443512 intron CG33926 + chr3L 9444432 intron CG33926 + chr3L 9445351 intron CG33926 + chr3L_13_9440001 chr3L_9440001 RAL-443 1661 chr3L 9494488 9494540 chr3L 9494696 9494748 21 203 7.0 5.5 6.2 2.9 260 chr3L 9494488 intergenic path - chr3L 9494618 3` UTR path - chr3L 9494748 3` UTR path - chr3L_21_9490001 chr3L_9490001 RAL-443 1662 chr3L 9501700 9501731 chr3L 9502206 9502237 roo 9 499 2.5 10.0 6.2 1.2 537 chr3L 9501700 intron path - chr3L 9501968 intron path - chr3L 9502237 intron path - chr3L_9_9500001 chr3L_9500001 RAL-443 1663 chr3L 9503443 9503463 chr3L 9503552 9503562 10 108 5.0 12.0 8.5 1.1 119 chr3L 9503443 intron path - chr3L 9503502 intron path - chr3L 9503562 intron path - chr3L_10_9500001 chr3L_9500001 RAL-443 1664 chr3L 9513429 9513475 chr3L 9513536 9513567 14 104 2.0 9.0 5.5 2.2 138 chr3L 9513429 intergenic CG33702 - chr3L 9513498 intergenic CG33702 - chr3L 9513567 intergenic CG33702 - chr3L_14_9510001 chr3L_9510001 RAL-443 1665 chr3L 9541845 9541858 chr3L 9541953 9541961 4 107 5.0 10.0 7.5 0.5 116 chr3L 9541845 intergenic Ir67a - chr3L 9541903 intergenic Ir67a - chr3L 9541961 intergenic Ir67a - chr3L_4_9540001 chr3L_9540001 RAL-443 1666 chr3L 9571881 9571937 chr3L 9572249 9572254 jockey 28 364 4.0 4.5 4.2 5.4 373 chr3L 9571881 intron CG42673 + chr3L 9572068 intron CG42673 + chr3L 9572254 intron CG42673 + chr3L_28_9570001 chr3L_9570001 RAL-443 1667 chr3L 9572279 9572281 chr3L 9572378 9572380 4 99 4.5 4.0 4.2 0.8 101 chr3L 9572279 intron CG42673 + chr3L 9572330 intron CG42673 + chr3L 9572380 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-443 1668 chr3L 9572287 9572332 chr3L 9572376 9572431 5 97 4.0 3.5 3.8 1.0 144 chr3L 9572287 intron CG42673 + chr3L 9572359 intron CG42673 + chr3L 9572431 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-443 1669 chr3L 9575896 9575944 chr3L 9580994 9581037 jockey 5 5096 5.0 8.5 6.8 0.6 5141 chr3L 9575896 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581037 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-443 1670 chr3L 9715584 9715632 chr3L 9715674 9715689 13 89 7.0 3.5 5.2 2.1 105 chr3L 9715584 intron vsg + chr3L 9715636 intron vsg + chr3L 9715689 intron vsg + chr3L_13_9715001 chr3L_9715001 RAL-443 1671 chr3L 9741603 9741651 chr3L 9741715 9741763 11 112 1.5 6.0 3.8 2.3 160 chr3L 9741603 intron,intron CG42268 -,CR44348 + chr3L 9741683 intron,intron CG42268 -,CR44348 + chr3L 9741763 intron,intron CG42268 -,CR44348 + chr3L_11_9740001 chr3L_9740001 RAL-443 1672 chr3L 9775364 9775394 chr3L 9775728 9775774 7 377 0.5 4.5 2.5 2.0 410 chr3L 9775364 intron CG8177 + chr3L 9775569 intron CG8177 + chr3L 9775774 intron CG8177 + chr3L_7_9775001 chr3L_9775001 RAL-443 1673 chr3L 9781688 9781944 chr3L 9781795 9782082 5 123 6.0 2.5 4.2 1.0 394 chr3L 9781688 intron CG8177 + chr3L 9781885 intron CG8177 + chr3L 9782082 intron CG8177 + chr3L_5_9780001 chr3L_9780001 RAL-443 1674 chr3L 9781956 9781960 chr3L 9782093 9782115 4 149 2.5 7.0 4.8 0.7 159 chr3L 9781956 intron CG8177 + chr3L 9782036 intron CG8177 + chr3L 9782115 intron CG8177 + chr3L_4_9780001 chr3L_9780001 RAL-443 1675 chr3L 9929683 9929695 chr3L 9938450 9938494 roo 7 8792 6.5 6.5 6.5 0.9 8811 chr3L 9929683 intron CG34356 + chr3L 9934088 intron CG34356 + chr3L 9938494 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-443 1676 chr3L 10003135 10003149 chr3L 10003251 10003266 10 116 11.0 3.5 7.2 1.2 131 chr3L 10003135 intron dpr6 + chr3L 10003200 intron dpr6 + chr3L 10003266 intron dpr6 + chr3L_10_10000001 chr3L_10000001 RAL-443 1677 chr3L 10003150 10003174 chr3L 10003247 10003291 13 115 4.0 3.0 3.5 2.9 141 chr3L 10003150 intron dpr6 + chr3L 10003220 intron dpr6 + chr3L 10003291 intron dpr6 + chr3L_13_10000001 chr3L_10000001 RAL-443 1678 chr3L 10004098 10004114 chr3L 10004198 10004214 6 99 0.0 6.0 3.0 1.5 116 chr3L 10004098 exon dpr6 + chr3L 10004156 intron dpr6 + chr3L 10004214 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-443 1679 chr3L 10007172 10007206 chr3L 10007295 10007329 15 123 3.0 8.5 5.8 2.2 157 chr3L 10007172 intron dpr6 + chr3L 10007250 intron dpr6 + chr3L 10007329 intron dpr6 + chr3L_15_10005001 chr3L_10005001 RAL-443 1680 chr3L 10037487 10037519 chr3L 10037599 10037647 7 114 1.0 0.0 0.5 4.7 160 chr3L 10037487 intron dpr6 + chr3L 10037567 intron dpr6 + chr3L 10037647 intron dpr6 + chr3L_7_10035001 chr3L_10035001 RAL-443 1681 chr3L 10060098 10060109 chr3L 10067697 10067708 17.6 8 7598 10.0 6.5 8.2 0.9 7610 chr3L 10060098 intron dpr6 + chr3L 10063903 intron dpr6 + chr3L 10067708 intron dpr6 + chr3L_8_10060001 chr3L_10060001 RAL-443 1682 chr3L 10060112 10060117 chr3L 10067694 10067716 17.6 6 7596 8.5 5.5 7.0 0.8 7604 chr3L 10060112 intron dpr6 + chr3L 10063914 intron dpr6 + chr3L 10067716 intron dpr6 + chr3L_6_10060001 chr3L_10060001 RAL-443 1683 chr3L 10082547 10082583 chr3L 10082649 10082685 5 95 5.0 3.0 4.0 1.0 138 chr3L 10082547 intron dpr6 + chr3L 10082616 intron dpr6 + chr3L 10082685 intron dpr6 + chr3L_5_10080001 chr3L_10080001 RAL-443 1684 chr3L 10160639 10160688 chr3L 10160741 10160780 6 99 2.5 0.5 1.5 2.4 141 chr3L 10160639 intron dpr10 - chr3L 10160710 intron dpr10 - chr3L 10160780 intron dpr10 - chr3L_6_10160001 chr3L_10160001 RAL-443 1685 chr3L 10186662 10186677 chr3L 10186771 10186776 6 107 7.5 0.0 3.8 1.2 114 chr3L 10186662 intergenic not near genes chr3L 10186719 intergenic not near genes chr3L 10186776 intergenic not near genes chr3L_6_10185001 chr3L_10185001 RAL-443 1686 chr3L 10211297 10211338 chr3L 10211398 10211439 8 101 1.0 1.0 1.0 4.0 142 chr3L 10211297 intergenic not near genes chr3L 10211368 intergenic not near genes chr3L 10211439 intergenic not near genes chr3L_8_10210001 chr3L_10210001 RAL-443 1687 chr3L 10250313 10250357 chr3L 10250424 10250468 7 111 0.0 4.0 2.0 2.3 155 chr3L 10250313 intergenic not near genes chr3L 10250390 intergenic not near genes chr3L 10250468 intergenic not near genes chr3L_7_10250001 chr3L_10250001 RAL-443 1688 chr3L 10298649 10298700 chr3L 10298756 10298756 24 101 0.5 4.5 2.5 6.9 107 chr3L 10298649 intergenic not near genes chr3L 10298702 intergenic not near genes chr3L 10298756 intergenic not near genes chr3L_24_10295001 chr3L_10295001 RAL-443 1689 chr3L 10308735 10308766 chr3L 10308827 10308832 6 89 2.5 4.5 3.5 1.3 97 chr3L 10308735 intergenic not near genes chr3L 10308784 intergenic not near genes chr3L 10308832 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-443 1690 chr3L 10310329 10310382 chr3L 10310446 10310499 33 113 3.5 6.0 4.8 5.7 170 chr3L 10310329 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310499 intergenic not near genes chr3L_33_10310001 chr3L_10310001 RAL-443 1691 chr3L 10314459 10314504 chr3L 10314559 10314604 19 95 5.5 2.5 4.0 3.8 145 chr3L 10314459 intergenic not near genes chr3L 10314532 intergenic not near genes chr3L 10314604 intergenic not near genes chr3L_19_10310001 chr3L_10310001 RAL-443 1692 chr3L 10328100 10328129 chr3L 10328232 10328261 8 131 6.5 6.5 6.5 1.1 161 chr3L 10328100 intergenic not near genes chr3L 10328180 intergenic not near genes chr3L 10328261 intergenic not near genes chr3L_8_10325001 chr3L_10325001 RAL-443 1693 chr3L 10372370 10372389 chr3L 10372469 10372488 8 97 7.5 3.0 5.2 1.3 118 chr3L 10372370 intergenic not near genes chr3L 10372429 intergenic not near genes chr3L 10372488 intergenic not near genes chr3L_8_10370001 chr3L_10370001 RAL-443 1694 chr3L 10414961 10414974 chr3L 10417318 10417328 Doc 4 2371 0.0 4.5 2.2 1.2 2367 chr3L 10414961 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417328 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-443 1695 chr3L 10417577 10417605 chr3L 10417643 10417681 10 75 5.0 4.0 4.5 1.8 104 chr3L 10417577 intergenic not near genes chr3L 10417629 intergenic not near genes chr3L 10417681 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-443 1696 chr3L 10449755 10449763 chr3L 10449908 10449916 4 153 3.5 2.5 3.0 1.0 161 chr3L 10449755 intergenic not near genes chr3L 10449836 intergenic not near genes chr3L 10449916 intergenic not near genes chr3L_4_10445001 chr3L_10445001 RAL-443 1697 chr3L 10538689 10538723 chr3L 10538772 10538822 16 96 2.5 4.5 3.5 3.6 133 chr3L 10538689 intron A2bp1 + chr3L 10538756 intron A2bp1 + chr3L 10538822 intron A2bp1 + chr3L_16_10535001 chr3L_10535001 RAL-443 1698 chr3L 10598813 10598831 chr3L 10598909 10598922 9 95 6.5 0.0 3.2 2.1 109 chr3L 10598813 intergenic not near genes chr3L 10598868 intergenic not near genes chr3L 10598922 intergenic not near genes chr3L_9_10595001 chr3L_10595001 RAL-443 1699 chr3L 10600443 10600470 chr3L 10600545 10600572 6 102 5.5 1.0 3.2 1.4 129 chr3L 10600443 intergenic not near genes chr3L 10600508 intergenic not near genes chr3L 10600572 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-443 1700 chr3L 10611605 10611630 chr3L 10611729 10611754 7 124 0.0 0.0 0.0 7.0 149 chr3L 10611605 intergenic not near genes chr3L 10611680 intergenic not near genes chr3L 10611754 intergenic not near genes chr3L_7_10610001 chr3L_10610001 RAL-443 1701 chr3L 10614754 10614798 chr3L 10614861 10614897 8 99 0.5 5.5 3.0 2.0 143 chr3L 10614754 intergenic not near genes chr3L 10614826 intergenic not near genes chr3L 10614897 intergenic not near genes chr3L_8_10610001 chr3L_10610001 RAL-443 1702 chr3L 10658056 10658206 chr3L 10658153 10658335 30 120 0.0 0.0 0.0 30.0 279 chr3L 10658056 intron CG32066 - chr3L 10658196 intron CG32066 - chr3L 10658335 intron CG32066 - chr3L_30_10655001 chr3L_10655001 RAL-443 1703 chr3L 10762809 10762856 chr3L 10762913 10762920 8 89 2.5 1.5 2.0 2.7 111 chr3L 10762809 intergenic not near genes chr3L 10762864 intergenic not near genes chr3L 10762920 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-443 1704 chr3L 10941412 10941424 chr3L 10941517 10941529 5 105 8.5 0.0 4.2 1.0 117 chr3L 10941412 intergenic not near genes chr3L 10941470 intergenic not near genes chr3L 10941529 intergenic not near genes chr3L_5_10940001 chr3L_10940001 RAL-443 1705 chr3L 10956369 10956395 chr3L 10956482 10956508 6 113 3.0 2.0 2.5 1.7 139 chr3L 10956369 intergenic not near genes chr3L 10956438 intergenic not near genes chr3L 10956508 intergenic not near genes chr3L_6_10955001 chr3L_10955001 RAL-443 1706 chr3L 11018543 11018576 chr3L 11018649 11018677 10 103 7.0 6.0 6.5 1.3 134 chr3L 11018543 intergenic not near genes chr3L 11018610 intergenic not near genes chr3L 11018677 intergenic not near genes chr3L_10_11015001 chr3L_11015001 RAL-443 1707 chr3L 11042101 11042152 chr3L 11042260 11042311 11 159 3.5 0.0 1.8 3.9 210 chr3L 11042101 intron CG43693 - chr3L 11042206 intron CG43693 - chr3L 11042311 intron CG43693 - chr3L_11_11040001 chr3L_11040001 RAL-443 1708 chr3L 11087043 11087087 chr3L 11088851 11088893 S-element 6 1804 3.0 5.5 4.2 1.2 1850 chr3L 11087043 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088893 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-443 1709 chr3L 11127191 11127295 chr3L 11127288 11127369 7 92 0.0 0.0 0.0 7.0 178 chr3L 11127191 intron CG42575 + chr3L 11127280 intron CG42575 + chr3L 11127369 intron CG42575 + chr3L_7_11125001 chr3L_11125001 RAL-443 1710 chr3L 11135511 11135532 chr3L 11135761 11135767 4 246 2.5 1.5 2.0 1.3 256 chr3L 11135511 intergenic CG14143 + chr3L 11135639 intergenic CG14143 +,CG32082 + chr3L 11135767 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-443 1711 chr3L 11145541 11145551 chr3L 11145633 11145659 6 104 0.0 5.0 2.5 1.7 118 chr3L 11145541 intron CG32082 + chr3L 11145600 intron CG32082 + chr3L 11145659 intron CG32082 + chr3L_6_11145001 chr3L_11145001 RAL-443 1712 chr3L 11180639 11180654 chr3L 11180767 11180782 9 128 2.5 5.5 4.0 1.8 143 chr3L 11180639 intron GlcAT-P - chr3L 11180710 intron GlcAT-P - chr3L 11180782 intron GlcAT-P - chr3L_9_11180001 chr3L_11180001 RAL-443 1713 chr3L 11237651 11237658 chr3L 11237751 11237758 5 100 6.0 0.0 3.0 1.2 107 chr3L 11237651 intergenic CR44718 -,CR44719 + chr3L 11237704 intergenic CR44718 -,CR44719 + chr3L 11237758 intergenic CR44718 -,CR44719 + chr3L_5_11235001 chr3L_11235001 RAL-443 1714 chr3L 11239580 11239596 chr3L 11239683 11239704 7 101 7.0 2.0 4.5 1.3 124 chr3L 11239580 intergenic not near genes chr3L 11239642 intergenic not near genes chr3L 11239704 intergenic not near genes chr3L_7_11235001 chr3L_11235001 RAL-443 1715 chr3L 11264474 11264486 chr3L 11271426 11271458 17.6 6 6968 3.0 2.0 2.5 1.7 6984 chr3L 11264474 intergenic not near genes chr3L 11267966 intergenic not near genes chr3L 11271458 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-443 1716 chr3L 11285182 11285231 chr3L 11285353 11285403 6 164 5.5 0.0 2.8 1.6 221 chr3L 11285182 intergenic CR45404 + chr3L 11285292 intergenic CR45404 + chr3L 11285403 intergenic CR45404 + chr3L_6_11285001 chr3L_11285001 RAL-443 1717 chr3L 11329680 11329713 chr3L 11332905 11332918 jockey 6 3221 6.0 2.5 4.2 1.2 3238 chr3L 11329680 intergenic not near genes chr3L 11331299 intergenic not near genes chr3L 11332918 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-443 1718 chr3L 11534993 11535030 chr3L 11535091 11535134 11 103 7.0 5.0 6.0 1.6 141 chr3L 11534993 intron Mob2 - chr3L 11535064 intron Mob2 - chr3L 11535134 intron Mob2 - chr3L_11_11535001 chr3L_11535001 RAL-443 1719 chr3L 11678075 11678124 chr3L 11678182 11678189 12 104 4.0 3.0 3.5 2.7 114 chr3L 11678075 intron CG32085 - chr3L 11678132 intron CG32085 - chr3L 11678189 intron CG32085 - chr3L_12_11675001 chr3L_11675001 RAL-443 1720 chr3L 11714747 11714784 chr3L 11714864 11714869 10 114 6.5 5.0 5.8 1.5 122 chr3L 11714747 intron CG14132 - chr3L 11714808 intron CG14132 - chr3L 11714869 intron CG14132 - chr3L_10_11710001 chr3L_11710001 RAL-443 1721 chr3L 11723069 11723083 chr3L 11727884 11727898 Doc 6 4815 16.0 8.5 12.2 0.5 4829 chr3L 11723069 3` UTR Bmcp + chr3L 11725484 intron Bmcp + chr3L 11727898 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-443 1722 chr3L 11723086 11723111 chr3L 11727882 11727926 Doc 13 4810 8.5 8.5 8.5 1.4 4840 chr3L 11723086 3` UTR Bmcp + chr3L 11725506 intron Bmcp + chr3L 11727926 3` UTR Bmcp + chr3L_13_11725001 chr3L_11725001 RAL-443 1723 chr3L 11743996 11744038 chr3L 11744124 11744141 12 120 2.0 1.5 1.8 4.3 145 chr3L 11743996 exon CG6024 - chr3L 11744068 intron CG6024 - chr3L 11744141 intron CG6024 - chr3L_12_11740001 chr3L_11740001 RAL-443 1724 chr3L 11754527 11754551 chr3L 11754599 11754649 17 93 2.0 6.5 4.2 3.3 122 chr3L 11754527 intron CG6024 - chr3L 11754588 intron CG6024 - chr3L 11754649 intron CG6024 - chr3L_17_11750001 chr3L_11750001 RAL-443 1725 chr3L 11757908 11757937 chr3L 11758025 11758054 7 117 4.5 0.0 2.2 2.2 146 chr3L 11757908 intron CG6024 - chr3L 11757981 intron CG6024 - chr3L 11758054 intron CG6024 - chr3L_7_11755001 chr3L_11755001 RAL-443 1726 chr3L 9313026 9313027 chr3L 11777678 11777678 8 2464651 16.0 21.0 18.5 0.4 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_10545001 chr3L_10545001 RAL-443 1727 chr3L 11777678 11777678 chr3L 12163305 12163305 5 385627 22.0 22.0 22.0 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_5_11970001 chr3L_11970001 RAL-443 1728 chr3L 11846361 11846419 chr3L 11846479 11846547 17 122 0.0 0.0 0.0 17.0 186 chr3L 11846361 intergenic not near genes chr3L 11846454 intergenic not near genes chr3L 11846547 intergenic not near genes chr3L_17_11845001 chr3L_11845001 RAL-443 1729 chr3L 11849327 11849354 chr3L 11849447 11849474 12 119 2.5 6.5 4.5 2.2 147 chr3L 11849327 intergenic not near genes chr3L 11849400 intergenic not near genes chr3L 11849474 intergenic not near genes chr3L_12_11845001 chr3L_11845001 RAL-443 1730 chr3L 11864533 11864585 chr3L 11865848 11865888 pogo 15 1308 1.5 6.5 4.0 3.0 1355 chr3L 11864533 intron CG44837 - chr3L 11865210 intron CG44837 - chr3L 11865888 intron CG44837 - chr3L_15_11865001 chr3L_11865001 RAL-443 1731 chr3L 11872642 11872690 chr3L 11872999 11873041 10 356 2.0 5.5 3.8 2.1 399 chr3L 11872642 intron CG44837 - chr3L 11872842 intron CG44837 - chr3L 11873041 intron CG44837 - chr3L_10_11870001 chr3L_11870001 RAL-443 1732 chr3L 11961213 11961218 chr3L 11961302 11961335 4 108 1.5 2.5 2.0 1.3 122 chr3L 11961213 exon prc - chr3L 11961274 exon prc - chr3L 11961335 exon prc - chr3L_4_11960001 chr3L_11960001 RAL-443 1733 chr3L 11962307 11962343 chr3L 11962445 11962481 9 137 0.5 1.5 1.0 4.5 174 chr3L 11962307 exon prc - chr3L 11962394 exon prc - chr3L 11962481 exon prc - chr3L_9_11960001 chr3L_11960001 RAL-443 1734 chr3L 11974313 11974366 chr3L 11974413 11974466 22 98 6.0 3.5 4.8 3.8 153 chr3L 11974313 intergenic not near genes chr3L 11974390 intergenic not near genes chr3L 11974466 intergenic CG14125 + chr3L_22_11970001 chr3L_11970001 RAL-443 1735 chr3L 12036489 12036511 chr3L 12039225 12039247 14 2737 7.0 32.0 19.5 0.7 2758 chr3L 12036489 intron rols - chr3L 12037868 intron rols - chr3L 12039247 intron rols - chr3L_14_12035001 chr3L_12035001 RAL-443 1736 chr3L 12046076 12046086 chr3L 12046164 12046184 4 92 7.0 2.5 4.8 0.7 108 chr3L 12046076 intron rols - chr3L 12046130 intron rols - chr3L 12046184 intron rols - chr3L_4_12045001 chr3L_12045001 RAL-443 1737 chr3L 12046087 12046118 chr3L 12046158 12046173 15 80 2.5 2.5 2.5 4.3 86 chr3L 12046087 intron rols - chr3L 12046130 intron rols - chr3L 12046173 intron rols - chr3L_15_12045001 chr3L_12045001 RAL-443 1738 chr3L 12089060 12089110 chr3L 12089160 12089210 22 96 4.5 4.0 4.2 4.2 150 chr3L 12089060 exon CG17154 + chr3L 12089135 3` UTR CG17154 + chr3L 12089210 3` UTR CG17154 + chr3L_22_12085001 chr3L_12085001 RAL-443 1739 chr3L 12092381 12092409 chr3L 12092475 12092506 13 96 5.5 5.5 5.5 2.0 125 chr3L 12092381 intergenic not near genes chr3L 12092444 intergenic not near genes chr3L 12092506 intergenic not near genes chr3L_13_12090001 chr3L_12090001 RAL-443 1740 chr3L 12119740 12119789 chr3L 12119857 12119904 19 116 6.5 3.5 5.0 3.2 164 chr3L 12119740 3` UTR ssp + chr3L 12119822 intergenic ssp +,CG11560 + chr3L 12119904 intergenic CG11560 +,ssp + chr3L_19_12115001 chr3L_12115001 RAL-443 1741 chr3L 12197333 12197387 chr3L 12197495 12197549 20 157 6.5 3.0 4.8 3.4 216 chr3L 12197333 intergenic CG11529 + chr3L 12197441 intergenic CG11529 + chr3L 12197549 intergenic CG11529 + chr3L_20_12195001 chr3L_12195001 RAL-443 1742 chr3L 12204225 12204270 chr3L 12204333 12204379 5 108 1.5 0.0 0.8 2.8 154 chr3L 12204225 3` UTR CG5626 - chr3L 12204302 3` UTR CG5626 - chr3L 12204379 3` UTR CG5626 - chr3L_5_12200001 chr3L_12200001 RAL-443 1743 chr3L 12304095 12304115 chr3L 12304181 12304211 4 91 4.0 4.5 4.2 0.8 116 chr3L 12304095 intergenic not near genes chr3L 12304153 intergenic not near genes chr3L 12304211 intergenic not near genes chr3L_4_12300001 chr3L_12300001 RAL-443 1744 chr3L 12340613 12340630 chr3L 12340723 12340740 8 110 10.0 15.5 12.8 0.6 127 chr3L 12340613 intron CrzR - chr3L 12340676 intron CrzR - chr3L 12340740 intron CrzR - chr3L_8_12340001 chr3L_12340001 RAL-443 1745 chr3L 12353905 12353938 chr3L 12354014 12354047 4 104 1.0 1.0 1.0 2.0 142 chr3L 12353905 intergenic not near genes chr3L 12353976 intergenic not near genes chr3L 12354047 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-443 1746 chr3L 12369531 12369560 chr3L 12369635 12369670 14 108 9.0 4.0 6.5 1.9 139 chr3L 12369531 intron Ncc69 - chr3L 12369600 intron Ncc69 - chr3L 12369670 intron Ncc69 - chr3L_14_12365001 chr3L_12365001 RAL-443 1747 chr3L 12381519 12381553 chr3L 12381634 12381669 6 112 1.0 1.0 1.0 3.0 150 chr3L 12381519 intron Ncc69 - chr3L 12381594 intron Ncc69 - chr3L 12381669 intron Ncc69 - chr3L_6_12380001 chr3L_12380001 RAL-443 1748 chr3L 12437431 12437477 chr3L 12437539 12437570 14 102 6.5 3.5 5.0 2.3 139 chr3L 12437431 intergenic not near genes chr3L 12437500 intergenic not near genes chr3L 12437570 intergenic not near genes chr3L_14_12435001 chr3L_12435001 RAL-443 1749 chr3L 12587336 12587381 chr3L 12587439 12587484 13 102 2.0 1.0 1.5 5.2 148 chr3L 12587336 intron ara + chr3L 12587410 intron ara + chr3L 12587484 intron ara + chr3L_13_12585001 chr3L_12585001 RAL-443 1750 chr3L 12605711 12605747 chr3L 12605810 12605847 14 98 2.0 3.5 2.8 3.7 136 chr3L 12605711 intergenic not near genes chr3L 12605779 intergenic not near genes chr3L 12605847 intergenic not near genes chr3L_14_12605001 chr3L_12605001 RAL-443 1751 chr3L 12626151 12626179 chr3L 12626280 12626303 12 127 8.5 0.0 4.2 2.3 152 chr3L 12626151 intergenic not near genes chr3L 12626227 intergenic not near genes chr3L 12626303 intergenic not near genes chr3L_12_12625001 chr3L_12625001 RAL-443 1752 chr3L 12647940 12647978 chr3L 12648024 12648059 15 90 3.0 4.0 3.5 3.3 119 chr3L 12647940 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648059 5` UTR CR32111 + chr3L_15_12645001 chr3L_12645001 RAL-443 1753 chr3L 12706622 12706655 chr3L 12706769 12706802 18 145 4.5 3.5 4.0 3.6 180 chr3L 12706622 intron mirr + chr3L 12706712 intron mirr + chr3L 12706802 intron mirr + chr3L_18_12705001 chr3L_12705001 RAL-443 1754 chr3L 12857975 12857996 chr3L 12858089 12858110 9 112 6.0 2.5 4.2 1.7 135 chr3L 12857975 3` UTR CG32107 - chr3L 12858042 3` UTR CG32107 - chr3L 12858110 3` UTR CG32107 - chr3L_9_12855001 chr3L_12855001 RAL-443 1755 chr3L 12874911 12874958 chr3L 12877221 12877234 jockey 9 2305 3.0 9.5 6.2 1.2 2323 chr3L 12874911 intergenic not near genes chr3L 12876072 intergenic not near genes chr3L 12877234 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-443 1756 chr3L 12894789 12894814 chr3L 12894887 12894897 4 90 11.5 7.5 9.5 0.4 108 chr3L 12894789 intergenic CG14118 + chr3L 12894843 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-443 1757 chr3L 12917513 12917548 chr3L 12917615 12917630 14 98 3.0 7.5 5.2 2.3 117 chr3L 12917513 intergenic not near genes chr3L 12917572 intergenic not near genes chr3L 12917630 intergenic not near genes chr3L_14_12915001 chr3L_12915001 RAL-443 1758 chr3L 12949261 12949317 chr3L 12949375 12949431 15 112 1.0 6.5 3.8 3.1 170 chr3L 12949261 intergenic not near genes chr3L 12949346 intergenic not near genes chr3L 12949431 intergenic not near genes chr3L_15_12945001 chr3L_12945001 RAL-443 1759 chr3L 12957789 12957816 chr3L 12962268 12962301 copia 14 4495 2.5 8.5 5.5 2.2 4512 chr3L 12957789 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-443 1760 chr3L 12962667 12962699 chr3L 12962788 12962835 13 126 5.5 4.5 5.0 2.2 168 chr3L 12962667 intergenic not near genes chr3L 12962751 intergenic not near genes chr3L 12962835 intergenic not near genes chr3L_13_12960001 chr3L_12960001 RAL-443 1761 chr3L 12970969 12971022 chr3L 12971072 12971120 12 98 2.5 5.5 4.0 2.4 151 chr3L 12970969 intergenic CG10748 - chr3L 12971044 intergenic CG10748 - chr3L 12971120 intergenic CG10748 - chr3L_12_12970001 chr3L_12970001 RAL-443 1762 chr3L 13000987 13001036 chr3L 13001096 13001145 15 107 5.0 5.5 5.2 2.4 158 chr3L 13000987 intergenic not near genes chr3L 13001066 intergenic not near genes chr3L 13001145 intergenic not near genes chr3L_15_13000001 chr3L_13000001 RAL-443 1763 chr3L 13007691 13007723 chr3L 13007790 13007831 12 106 0.5 2.0 1.2 5.5 140 chr3L 13007691 exon CG11263 + chr3L 13007761 3` UTR CG11263 + chr3L 13007831 3` UTR CG11263 + chr3L_12_13005001 chr3L_13005001 RAL-443 1764 chr3L 13031576 13031600 chr3L 13031664 13031691 14 98 8.0 7.0 7.5 1.6 115 chr3L 13031576 intron CG17672 + chr3L 13031634 intron CG17672 + chr3L 13031691 intron CG17672 + chr3L_14_13030001 chr3L_13030001 RAL-443 1765 chr3L 13031601 13031603 chr3L 13031663 13031710 4 96 7.5 6.5 7.0 0.5 109 chr3L 13031601 intron CG17672 + chr3L 13031656 intron CG17672 + chr3L 13031710 intron CG17672 + chr3L_4_13030001 chr3L_13030001 RAL-443 1766 chr3L 13034458 13034495 chr3L 13034541 13034595 9 88 2.0 4.0 3.0 2.2 137 chr3L 13034458 intron CG17672 + chr3L 13034526 intron CG17672 + chr3L 13034595 intron CG17672 + chr3L_9_13030001 chr3L_13030001 RAL-443 1767 chr3L 13050549 13050594 chr3L 13050642 13050688 20 93 5.0 1.5 3.2 4.8 139 chr3L 13050549 intergenic not near genes chr3L 13050618 intergenic not near genes chr3L 13050688 intergenic not near genes chr3L_20_13050001 chr3L_13050001 RAL-443 1768 chr3L 13069540 13069585 chr3L 13069639 13069673 25 97 6.5 6.0 6.2 3.5 133 chr3L 13069540 intergenic not near genes chr3L 13069606 intergenic not near genes chr3L 13069673 intergenic not near genes chr3L_25_13065001 chr3L_13065001 RAL-443 1769 chr3L 13074018 13074068 chr3L 13074171 13074221 14 152 6.5 1.5 4.0 2.8 203 chr3L 13074018 intergenic not near genes chr3L 13074120 intergenic not near genes chr3L 13074221 intergenic not near genes chr3L_14_13070001 chr3L_13070001 RAL-443 1770 chr3L 13144098 13144144 chr3L 13144195 13144231 16 92 7.0 7.0 7.0 2.0 133 chr3L 13144098 intergenic not near genes chr3L 13144164 intergenic not near genes chr3L 13144231 intergenic not near genes chr3L_16_13140001 chr3L_13140001 RAL-443 1771 chr3L 13159287 13159297 chr3L 13159372 13159376 4 85 4.5 0.5 2.5 1.1 89 chr3L 13159287 intergenic not near genes chr3L 13159332 intergenic not near genes chr3L 13159376 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-443 1772 chr3L 13174249 13174273 chr3L 13174356 13174385 10 111 5.0 6.0 5.5 1.5 136 chr3L 13174249 intergenic snky + chr3L 13174317 intergenic snky + chr3L 13174385 intergenic snky + chr3L_10_13170001 chr3L_13170001 RAL-443 1773 chr3L 13201300 13201345 chr3L 13201461 13201501 7 156 3.0 3.0 3.0 1.8 201 chr3L 13201300 intergenic not near genes chr3L 13201400 intergenic not near genes chr3L 13201501 intergenic not near genes chr3L_7_13200001 chr3L_13200001 RAL-443 1774 chr3L 13206226 13206265 chr3L 13206317 13206328 8 95 2.5 6.5 4.5 1.5 102 chr3L 13206226 intergenic not near genes chr3L 13206277 intergenic not near genes chr3L 13206328 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-443 1775 chr3L 13267270 13267316 chr3L 13267401 13267448 20 130 4.5 7.5 6.0 2.9 178 chr3L 13267270 intron caps + chr3L 13267359 intron caps + chr3L 13267448 intron caps + chr3L_20_13265001 chr3L_13265001 RAL-443 1776 chr3L 13296499 13296548 chr3L 13296610 13296659 20 111 6.5 8.0 7.2 2.4 160 chr3L 13296499 intergenic Sfp70A4 - chr3L 13296579 3` UTR Sfp70A4 - chr3L 13296659 3` UTR Sfp70A4 - chr3L_20_13295001 chr3L_13295001 RAL-443 1777 chr3L 13299370 13299416 chr3L 13299481 13299527 7 111 8.5 3.0 5.8 1.0 157 chr3L 13299370 intergenic CG42481 -,CG43147 - chr3L 13299448 intergenic CG43147 -,CG42481 - chr3L 13299527 intergenic CG43147 - chr3L_7_13295001 chr3L_13295001 RAL-443 1778 chr3L 13315837 13315864 chr3L 13315944 13315971 6 104 5.5 7.5 6.5 0.8 134 chr3L 13315837 intergenic not near genes chr3L 13315904 intergenic not near genes chr3L 13315971 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-443 1779 chr3L 13335522 13335564 chr3L 13335642 13335683 15 113 3.0 5.5 4.2 2.9 161 chr3L 13335522 intergenic not near genes chr3L 13335602 intergenic not near genes chr3L 13335683 intergenic not near genes chr3L_15_13335001 chr3L_13335001 RAL-443 1780 chr3L 13337148 13337158 chr3L 13337259 13337269 4 111 0.0 3.5 1.8 1.4 121 chr3L 13337148 intergenic not near genes chr3L 13337208 intergenic not near genes chr3L 13337269 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-443 1781 chr3L 13338267 13338316 chr3L 13338378 13338387 7 104 2.5 6.5 4.5 1.3 120 chr3L 13338267 intergenic not near genes chr3L 13338327 intergenic not near genes chr3L 13338387 intergenic not near genes chr3L_7_13335001 chr3L_13335001 RAL-443 1782 chr3L 13392746 13392766 chr3L 13392849 13392858 11 101 5.5 0.0 2.8 2.9 112 chr3L 13392746 intergenic not near genes chr3L 13392802 intergenic not near genes chr3L 13392858 intergenic not near genes chr3L_11_13390001 chr3L_13390001 RAL-443 1783 chr3L 13396041 13396083 chr3L 13396146 13396147 13 100 6.0 5.0 5.5 2.0 106 chr3L 13396041 intergenic sens - chr3L 13396094 intergenic sens - chr3L 13396147 intergenic sens - chr3L_13_13395001 chr3L_13395001 RAL-443 1784 chr3L 13525139 13525152 chr3L 13532955 13532965 roo 4 7814 16.5 7.0 11.8 0.3 7826 chr3L 13525139 intergenic not near genes chr3L 13529052 intergenic not near genes chr3L 13532965 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-443 1785 chr3L 13525155 13525186 chr3L 13532951 13532991 roo 9 7799 8.5 7.0 7.8 1.0 7836 chr3L 13525155 intergenic not near genes chr3L 13529073 intergenic not near genes chr3L 13532991 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-443 1786 chr3L 13535888 13535935 chr3L 13535984 13536031 15 92 4.0 6.0 5.0 2.5 143 chr3L 13535888 intergenic not near genes chr3L 13535960 intergenic not near genes chr3L 13536031 intergenic not near genes chr3L_15_13535001 chr3L_13535001 RAL-443 1787 chr3L 13653720 13653760 chr3L 13653839 13653890 15 124 3.5 6.0 4.8 2.6 170 chr3L 13653720 intron bru-3 - chr3L 13653805 intron bru-3 - chr3L 13653890 intron bru-3 - chr3L_15_13650001 chr3L_13650001 RAL-443 1788 chr3L 13677516 13677557 chr3L 13677608 13677653 17 96 7.0 3.5 5.2 2.7 137 chr3L 13677516 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677653 intron bru-3 - chr3L_17_13675001 chr3L_13675001 RAL-443 1789 chr3L 13703421 13703443 chr3L 13703520 13703548 7 103 10.5 5.0 7.8 0.8 127 chr3L 13703421 intron bru-3 - chr3L 13703484 intron bru-3 - chr3L 13703548 intron bru-3 - chr3L_7_13700001 chr3L_13700001 RAL-443 1790 chr3L 13703447 13703468 chr3L 13703518 13703569 12 94 5.0 5.0 5.0 2.0 122 chr3L 13703447 intron bru-3 - chr3L 13703508 intron bru-3 - chr3L 13703569 intron bru-3 - chr3L_12_13700001 chr3L_13700001 RAL-443 1791 chr3L 13721004 13721036 chr3L 13721108 13721140 10 104 6.5 5.0 5.8 1.5 136 chr3L 13721004 intron bru-3 - chr3L 13721072 intron bru-3 - chr3L 13721140 intron bru-3 - chr3L_10_13720001 chr3L_13720001 RAL-443 1792 chr3L 13721038 13721050 chr3L 13721106 13721154 5 81 4.0 5.0 4.5 0.9 116 chr3L 13721038 intron bru-3 - chr3L 13721096 intron bru-3 - chr3L 13721154 intron bru-3 - chr3L_5_13720001 chr3L_13720001 RAL-443 1793 chr3L 13722430 13722472 chr3L 13722528 13722554 7 93 4.0 8.0 6.0 1.0 124 chr3L 13722430 intron bru-3 - chr3L 13722492 intron bru-3 - chr3L 13722554 intron bru-3 - chr3L_7_13720001 chr3L_13720001 RAL-443 1794 chr3L 13740015 13740052 chr3L 13740127 13740154 8 108 1.5 6.5 4.0 1.6 139 chr3L 13740015 intron bru-3 - chr3L 13740084 intron bru-3 - chr3L 13740154 intron bru-3 - chr3L_8_13740001 chr3L_13740001 RAL-443 1795 chr3L 13804525 13804576 chr3L 13822831 13822857 roo 12 18298 5.0 3.0 4.0 2.4 18332 chr3L 13804525 intergenic not near genes chr3L 13813691 intergenic not near genes chr3L 13822857 intergenic not near genes chr3L_12_13810001 chr3L_13810001 RAL-443 1796 chr3L 13841499 13841547 chr3L 13841603 13841641 10 98 3.0 0.5 1.8 3.6 142 chr3L 13841499 exon CG8757 - chr3L 13841570 intron CG8757 - chr3L 13841641 exon CG8757 - chr3L_10_13840001 chr3L_13840001 RAL-443 1797 chr3L 13884362 13884373 chr3L 13884476 13884487 6 114 6.5 0.0 3.2 1.4 125 chr3L 13884362 intron dysc - chr3L 13884424 intron dysc - chr3L 13884487 intron dysc - chr3L_6_13880001 chr3L_13880001 RAL-443 1798 chr3L 5921644 5921647 chr3L 13915287 13915290 4 7993643 18.0 21.0 19.5 0.2 7993646 chr3L 5921644 intergenic CG10483 -,CG32407 + chr3L 9918467 intron CG34356 + chr3L 13915290 intron Rgl - chr3L_4_9915001 chr3L_9915001 RAL-443 1799 chr3L 13920401 13920431 chr3L 13920501 13920531 13 98 7.0 6.0 6.5 1.7 130 chr3L 13920401 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920531 intron Rgl - chr3L_13_13920001 chr3L_13920001 RAL-443 1800 chr3L 13921360 13921404 chr3L 13921461 13921505 10 100 5.5 5.0 5.2 1.6 145 chr3L 13921360 intron Rgl - chr3L 13921432 intron Rgl - chr3L 13921505 intron Rgl - chr3L_10_13920001 chr3L_13920001 RAL-443 1801 chr3L 13936452 13936648 chr3L 13936552 13936802 12 118 4.5 5.0 4.8 2.1 350 chr3L 13936452 intergenic not near genes chr3L 13936627 intergenic not near genes chr3L 13936802 intergenic not near genes chr3L_12_13935001 chr3L_13935001 RAL-443 1802 chr3L 13993996 13994008 chr3L 13994089 13994102 6 96 5.5 5.5 5.5 0.9 106 chr3L 13993996 intergenic 26-29-p + chr3L 13994049 intergenic 26-29-p + chr3L 13994102 intergenic 26-29-p + chr3L_6_13990001 chr3L_13990001 RAL-443 1803 chr3L 14004423 14004461 chr3L 14004522 14004523 8 92 6.5 6.5 6.5 1.1 100 chr3L 14004423 intron upSET + chr3L 14004473 intron upSET + chr3L 14004523 intron upSET + chr3L_8_14000001 chr3L_14000001 RAL-443 1804 chr3L 14004462 14004467 chr3L 14004520 14004536 5 74 6.0 5.0 5.5 0.8 74 chr3L 14004462 intron upSET + chr3L 14004499 intron upSET + chr3L 14004536 intron upSET + chr3L_5_14000001 chr3L_14000001 RAL-443 1805 chr3L 14061644 14061687 chr3L 14061753 14061793 5 103 3.5 0.0 1.8 1.8 149 chr3L 14061644 intron CG32138 + chr3L 14061718 intron CG32138 + chr3L 14061793 intron CG32138 + chr3L_5_14060001 chr3L_14060001 RAL-443 1806 chr3L 14092718 14092748 chr3L 14092821 14092844 8 101 5.5 0.0 2.8 2.1 126 chr3L 14092718 intergenic not near genes chr3L 14092781 intergenic not near genes chr3L 14092844 intergenic not near genes chr3L_8_14090001 chr3L_14090001 RAL-443 1807 chr3L 14180712 14180767 chr3L 14180808 14180863 28 93 4.0 5.0 4.5 5.1 151 chr3L 14180712 intergenic not near genes chr3L 14180788 intergenic not near genes chr3L 14180863 intergenic not near genes chr3L_28_14180001 chr3L_14180001 RAL-443 1808 chr3L 14194703 14194742 chr3L 14194799 14194832 12 94 6.5 4.5 5.5 1.8 129 chr3L 14194703 intron nuf + chr3L 14194768 intron nuf + chr3L 14194832 intron nuf + chr3L_12_14190001 chr3L_14190001 RAL-443 1809 chr3L 14196404 14196439 chr3L 14196509 14196544 10 105 5.5 5.0 5.2 1.6 140 chr3L 14196404 intron nuf + chr3L 14196474 intron nuf + chr3L 14196544 intron nuf + chr3L_10_14195001 chr3L_14195001 RAL-443 1810 chr3L 14205964 14205999 chr3L 14206062 14206092 8 98 4.5 5.0 4.8 1.4 128 chr3L 14205964 intron nuf + chr3L 14206028 intron nuf + chr3L 14206092 intron nuf + chr3L_8_14205001 chr3L_14205001 RAL-443 1811 chr3L 14248461 14248509 chr3L 14248559 14248607 15 94 2.0 3.5 2.8 3.9 146 chr3L 14248461 intergenic not near genes chr3L 14248534 intergenic not near genes chr3L 14248607 intergenic not near genes chr3L_15_14245001 chr3L_14245001 RAL-443 1812 chr3L 14267355 14267398 chr3L 14271815 14271816 F-element 13 4455 7.0 10.0 8.5 1.4 4461 chr3L 14267355 intergenic not near genes chr3L 14269586 intergenic not near genes chr3L 14271816 intergenic not near genes chr3L_13_14265001 chr3L_14265001 RAL-443 1813 chr3L 14295991 14296011 chr3L 14296467 14296517 roo 8 494 2.5 5.0 3.8 1.7 526 chr3L 14295991 intron fz + chr3L 14296254 intron fz + chr3L 14296517 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-443 1814 chr3L 14312030 14312056 chr3L 14316853 14316866 X-element 7 4825 0.5 5.5 3.0 1.8 4836 chr3L 14312030 exon fz + chr3L 14314448 intron fz + chr3L 14316866 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-443 1815 chr3L 14331448 14331490 chr3L 14331540 14331593 17 97 2.5 2.5 2.5 4.9 145 chr3L 14331448 intron fz + chr3L 14331520 intron fz + chr3L 14331593 intron fz + chr3L_17_14330001 chr3L_14330001 RAL-443 1816 chr3L 14338278 14338329 chr3L 14338394 14338435 15 113 1.0 2.5 1.8 5.4 157 chr3L 14338278 intron fz + chr3L 14338356 intron fz + chr3L 14338435 intron fz + chr3L_15_14335001 chr3L_14335001 RAL-443 1817 chr3L 14341421 14341436 chr3L 14341576 14341581 4 152 0.0 2.5 1.2 1.8 160 chr3L 14341421 intron fz + chr3L 14341501 intron fz + chr3L 14341581 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-443 1818 chr3L 14429984 14430010 chr3L 14430082 14430108 5 98 5.0 3.5 4.2 1.0 124 chr3L 14429984 intron bbg - chr3L 14430046 intron bbg - chr3L 14430108 intron bbg - chr3L_5_14430001 chr3L_14430001 RAL-443 1819 chr3L 14441583 14441625 chr3L 14441752 14441794 13 166 5.5 7.5 6.5 1.7 211 chr3L 14441583 intron bbg - chr3L 14441688 intron bbg - chr3L 14441794 intron bbg - chr3L_13_14440001 chr3L_14440001 RAL-443 1820 chr3L 14468428 14468461 chr3L 14473654 14473687 copia 11 5226 7.5 5.0 6.2 1.5 5259 chr3L 14468428 intron bbg - chr3L 14471058 intron bbg - chr3L 14473687 intron bbg - chr3L_11_14470001 chr3L_14470001 RAL-443 1821 chr3L 14486012 14486031 chr3L 14486101 14486126 7 96 11.0 4.0 7.5 0.8 114 chr3L 14486012 intron bbg - chr3L 14486069 intron bbg - chr3L 14486126 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-443 1822 chr3L 14522079 14522130 chr3L 14522198 14522249 15 119 3.0 3.0 3.0 3.8 170 chr3L 14522079 intron bbg - chr3L 14522164 intron bbg - chr3L 14522249 intron bbg - chr3L_15_14520001 chr3L_14520001 RAL-443 1823 chr3L 14524317 14524354 chr3L 14529079 14529133 F-element 16 4774 5.0 3.5 4.2 3.1 4816 chr3L 14524317 intron bbg - chr3L 14526725 intron bbg - chr3L 14529133 intron bbg - chr3L_16_14525001 chr3L_14525001 RAL-443 1824 chr3L 14531213 14531241 chr3L 14531331 14531364 6 120 1.5 6.0 3.8 1.2 151 chr3L 14531213 intron bbg - chr3L 14531288 intron bbg - chr3L 14531364 intron bbg - chr3L_6_14530001 chr3L_14530001 RAL-443 1825 chr3L 14546804 14546815 chr3L 14546925 14546936 5 121 0.5 5.5 3.0 1.2 132 chr3L 14546804 intron CG9238 - chr3L 14546870 intron CG9238 - chr3L 14546936 intron CG9238 - chr3L_5_14545001 chr3L_14545001 RAL-443 1826 chr3L 14584179 14584185 chr3L 14584265 14584280 5 100 0.0 4.0 2.0 1.7 101 chr3L 14584179 intron HGTX - chr3L 14584230 intron HGTX - chr3L 14584280 intron HGTX - chr3L_5_14580001 chr3L_14580001 RAL-443 1827 chr3L 14617185 14617227 chr3L 14617305 14617347 17 118 7.0 7.5 7.2 2.1 162 chr3L 14617185 intron shd + chr3L 14617266 intron shd + chr3L 14617347 intron shd + chr3L_17_14615001 chr3L_14615001 RAL-443 1828 chr3L 14653923 14653943 chr3L 14654050 14654051 6 120 4.5 2.5 3.5 1.3 128 chr3L 14653923 intron dlp + chr3L 14653987 intron dlp + chr3L 14654051 intron dlp + chr3L_6_14650001 chr3L_14650001 RAL-443 1829 chr3L 14731295 14731344 chr3L 14731733 14731777 19 433 4.0 6.0 5.0 3.2 482 chr3L 14731295 intron ome + chr3L 14731536 intron ome + chr3L 14731777 intron ome + chr3L_19_14730001 chr3L_14730001 RAL-443 1830 chr3L 14740881 14740889 chr3L 14740980 14740981 4 102 12.5 5.0 8.8 0.4 100 chr3L 14740881 intron ome + chr3L 14740931 intron ome + chr3L 14740981 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-443 1831 chr3L 14740891 14740923 chr3L 14740978 14741032 17 104 4.5 4.5 4.5 3.1 141 chr3L 14740891 intron ome + chr3L 14740962 intron ome + chr3L 14741032 intron ome + chr3L_17_14740001 chr3L_14740001 RAL-443 1832 chr3L 14825141 14825154 chr3L 14832888 14832901 Stalker2 5 7747 0.5 3.0 1.8 1.8 7760 chr3L 14825141 intron CG17839 + chr3L 14829021 intron CG17839 + chr3L 14832901 intron CG17839 + chr3L_5_14825001 chr3L_14825001 RAL-443 1833 chr3L 14861783 14861835 chr3L 14861883 14861935 16 99 1.5 5.5 3.5 3.6 152 chr3L 14861783 intron CG17839 + chr3L 14861859 intron CG17839 + chr3L 14861935 intron CG17839 + chr3L_16_14860001 chr3L_14860001 RAL-443 1834 chr3L 14913881 14913921 chr3L 14913978 14914018 14 92 4.0 5.0 4.5 2.5 137 chr3L 14913881 intron DCX-EMAP + chr3L 14913950 intron DCX-EMAP + chr3L 14914018 intron DCX-EMAP + chr3L_14_14910001 chr3L_14910001 RAL-443 1835 chr3L 14917643 14917652 chr3L 14917746 14917755 5 102 16.0 2.5 9.2 0.5 112 chr3L 14917643 intron DCX-EMAP + chr3L 14917699 intron DCX-EMAP + chr3L 14917755 intron DCX-EMAP + chr3L_5_14915001 chr3L_14915001 RAL-443 1836 chr3L 14917653 14917683 chr3L 14917744 14917781 14 99 10.0 2.5 6.2 1.9 128 chr3L 14917653 intron DCX-EMAP + chr3L 14917717 intron DCX-EMAP + chr3L 14917781 intron DCX-EMAP + chr3L_14_14915001 chr3L_14915001 RAL-443 1837 chr3L 14959969 14960016 chr3L 14960073 14960120 18 102 5.0 6.0 5.5 2.8 151 chr3L 14959969 intergenic not near genes chr3L 14960044 intergenic not near genes chr3L 14960120 intergenic not near genes chr3L_18_14960001 chr3L_14960001 RAL-443 1838 chr3L 14970743 14970763 chr3L 14971073 14971093 F-element 7 330 9.0 4.5 6.8 0.9 350 chr3L 14970743 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971093 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-443 1839 chr3L 14997531 14997561 chr3L 14997768 14997802 8 240 5.5 6.0 5.8 1.2 271 chr3L 14997531 3` UTR Zip71B + chr3L 14997666 3` UTR Zip71B + chr3L 14997802 3` UTR Zip71B + chr3L_8_14995001 chr3L_14995001 RAL-443 1840 chr3L 15085028 15085080 chr3L 15086214 15086266 1360 16 1181 4.5 4.5 4.5 2.9 1238 chr3L 15085028 intron cp309 - chr3L 15085647 intron cp309 - chr3L 15086266 intron cp309 - chr3L_16_15085001 chr3L_15085001 RAL-443 1841 chr3L 15146143 15146171 chr3L 15146240 15146280 4 100 0.0 6.0 3.0 1.0 137 chr3L 15146143 3` UTR Pex3 + chr3L 15146212 3` UTR Pex3 + chr3L 15146280 3` UTR Pex3 + chr3L_4_15145001 chr3L_15145001 RAL-443 1842 chr3L 15151212 15151241 chr3L 15151400 15151445 9 196 4.5 2.5 3.5 2.0 233 chr3L 15151212 intron FucTA + chr3L 15151328 intron FucTA + chr3L 15151445 intron FucTA + chr3L_9_15150001 chr3L_15150001 RAL-443 1843 chr3L 15219723 15219772 chr3L 15219825 15219874 11 101 3.5 4.0 3.8 2.3 151 chr3L 15219723 intergenic not near genes chr3L 15219798 intergenic not near genes chr3L 15219874 intergenic not near genes chr3L_11_15215001 chr3L_15215001 RAL-443 1844 chr3L 15257423 15257447 chr3L 15257656 15257680 6 233 1.5 2.0 1.8 2.1 257 chr3L 15257423 intergenic not near genes chr3L 15257552 intergenic not near genes chr3L 15257680 intergenic not near genes chr3L_6_15255001 chr3L_15255001 RAL-443 1845 chr3L 15286513 15286520 chr3L 15286669 15286676 5 156 2.5 0.0 1.2 2.3 163 chr3L 15286513 intergenic not near genes chr3L 15286594 intergenic not near genes chr3L 15286676 intergenic not near genes chr3L_5_15285001 chr3L_15285001 RAL-443 1846 chr3L 15286533 15286554 chr3L 15286661 15286697 4 142 1.0 0.0 0.5 2.7 164 chr3L 15286533 intergenic not near genes chr3L 15286615 intergenic not near genes chr3L 15286697 intergenic not near genes chr3L_4_15285001 chr3L_15285001 RAL-443 1847 chr3L 15295752 15295801 chr3L 15298615 15298630 gypsy5 15 2860 6.0 7.5 6.8 1.9 2878 chr3L 15295752 intergenic not near genes chr3L 15297191 intergenic not near genes chr3L 15298630 intergenic Best4 + chr3L_15_15295001 chr3L_15295001 RAL-443 1848 chr3L 15333124 15333168 chr3L 15333225 15333270 10 101 2.5 5.0 3.8 2.1 146 chr3L 15333124 intergenic CR43247 + chr3L 15333197 intergenic CR43247 + chr3L 15333270 intergenic CR43247 + chr3L_10_15330001 chr3L_15330001 RAL-443 1849 chr3L 15384948 15384988 chr3L 15385096 15385136 18 143 4.0 3.5 3.8 3.8 188 chr3L 15384948 intergenic not near genes chr3L 15385042 intergenic not near genes chr3L 15385136 intergenic not near genes chr3L_18_15385001 chr3L_15385001 RAL-443 1850 chr3L 15400793 15400846 chr3L 15400939 15400985 19 143 4.5 5.5 5.0 3.2 192 chr3L 15400793 intergenic not near genes chr3L 15400889 intergenic not near genes chr3L 15400985 intergenic not near genes chr3L_19_15400001 chr3L_15400001 RAL-443 1851 chr3L 15443566 15443596 chr3L 15443662 15443691 11 96 7.0 3.5 5.2 1.8 125 chr3L 15443566 intergenic not near genes chr3L 15443628 intergenic not near genes chr3L 15443691 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-443 1852 chr3L 15466019 15466136 chr3L 15466121 15466252 13 110 0.0 0.0 0.0 13.0 233 chr3L 15466019 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466252 intergenic not near genes chr3L_13_15465001 chr3L_15465001 RAL-443 1853 chr3L 15466504 15466549 chr3L 15466608 15466650 5 101 2.5 7.0 4.8 0.9 146 chr3L 15466504 intergenic not near genes chr3L 15466577 intergenic not near genes chr3L 15466650 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-443 1854 chr3L 15541597 15541652 chr3L 15541708 15541763 16 111 4.5 2.5 3.5 3.6 166 chr3L 15541597 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541763 intron CrebA + chr3L_16_15540001 chr3L_15540001 RAL-443 1855 chr3L 15554907 15554952 chr3L 15556709 15556759 S-element 22 1806 4.5 7.5 6.0 3.1 1852 chr3L 15554907 intron AGO2 + chr3L 15555833 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_22_15555001 chr3L_15555001 RAL-443 1856 chr3L 15600178 15600197 chr3L 15600299 15600318 6 121 8.0 4.5 6.2 0.8 140 chr3L 15600178 intron RhoGAP71E + chr3L 15600248 intron RhoGAP71E + chr3L 15600318 intron RhoGAP71E + chr3L_6_15600001 chr3L_15600001 RAL-443 1857 chr3L 15641779 15641813 chr3L 15641884 15641918 11 102 0.0 3.5 1.8 3.9 139 chr3L 15641779 intron comm3 - chr3L 15641848 intron comm3 - chr3L 15641918 intron comm3 - chr3L_11_15640001 chr3L_15640001 RAL-443 1858 chr3L 15651160 15651201 chr3L 15651263 15651298 8 99 8.5 4.5 6.5 1.1 138 chr3L 15651160 exon CG43084 + chr3L 15651229 exon CG43084 + chr3L 15651298 exon CG43084 + chr3L_8_15650001 chr3L_15650001 RAL-443 1859 chr3L 15760661 15760706 chr3L 15760766 15760804 6 103 3.0 1.0 2.0 2.0 143 chr3L 15760661 intergenic not near genes chr3L 15760732 intergenic not near genes chr3L 15760804 intergenic not near genes chr3L_6_15760001 chr3L_15760001 RAL-443 1860 chr3L 15833801 15833853 chr3L 15834020 15834072 24 221 44.0 44.5 44.2 0.5 271 chr3L 15833801 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834072 3` UTR CG18081 - chr3L_24_15830001 chr3L_15830001 RAL-443 1861 chr3L 15883172 15883222 chr3L 15883485 15883535 19 308 6.0 2.5 4.2 3.7 363 chr3L 15883172 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883535 intron pHCl - chr3L_19_15880001 chr3L_15880001 RAL-443 1862 chr3L 15929221 15929226 chr3L 15938388 15938393 roo 4 9167 0.0 13.5 6.8 0.5 9172 chr3L 15929221 intron Pka-C3 - chr3L 15933807 intron Pka-C3 - chr3L 15938393 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-443 1863 chr3L 15939835 15939883 chr3L 15939926 15939974 18 94 5.5 7.5 6.5 2.4 139 chr3L 15939835 intron Pka-C3 - chr3L 15939904 intron Pka-C3 - chr3L 15939974 intron Pka-C3 - chr3L_18_15935001 chr3L_15935001 RAL-443 1864 chr3L 15946483 15946536 chr3L 15946589 15946642 10 105 3.0 0.0 1.5 4.0 159 chr3L 15946483 intron Pka-C3 - chr3L 15946562 intron Pka-C3 - chr3L 15946642 intron Pka-C3 - chr3L_10_15945001 chr3L_15945001 RAL-443 1865 chr3L 15948753 15948761 chr3L 15948836 15948838 4 88 3.0 2.5 2.8 1.1 85 chr3L 15948753 intron Pka-C3 - chr3L 15948796 intron Pka-C3 - chr3L 15948838 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-443 1866 chr3L 15981657 15981681 chr3L 15981763 15981776 7 104 11.5 6.0 8.8 0.7 119 chr3L 15981657 intron,3` UTR brm -,CG17027 + chr3L 15981716 intron,3` UTR brm -,CG17027 + chr3L 15981776 intron,3` UTR brm -,CG17027 + chr3L_7_15980001 chr3L_15980001 RAL-443 1867 chr3L 16060464 16060511 chr3L 16060623 16060670 8 158 4.0 4.5 4.2 1.5 206 chr3L 16060464 intron Mbs + chr3L 16060567 intron Mbs + chr3L 16060670 intron Mbs + chr3L_8_16060001 chr3L_16060001 RAL-443 1868 chr3L 16070732 16070759 chr3L 16070819 16070856 15 93 5.0 3.0 4.0 3.0 124 chr3L 16070732 intron Mbs + chr3L 16070794 intron Mbs + chr3L 16070856 exon Mbs + chr3L_15_16070001 chr3L_16070001 RAL-443 1869 chr3L 16149181 16149228 chr3L 16149290 16149337 21 106 6.0 7.5 6.8 2.7 156 chr3L 16149181 intron CG5151 - chr3L 16149259 intron CG5151 - chr3L 16149337 intron CG5151 - chr3L_21_16145001 chr3L_16145001 RAL-443 1870 chr3L 16162586 16162627 chr3L 16162680 16162680 10 89 4.5 5.5 5.0 1.7 94 chr3L 16162586 intron CG5151 - chr3L 16162633 intron CG5151 - chr3L 16162680 intron CG5151 - chr3L_10_16160001 chr3L_16160001 RAL-443 1871 chr3L 16182055 16182093 chr3L 16182195 16182233 15 139 0.0 7.0 3.5 3.3 178 chr3L 16182055 intergenic not near genes chr3L 16182144 intergenic not near genes chr3L 16182233 intergenic not near genes chr3L_15_16180001 chr3L_16180001 RAL-443 1872 chr3L 16184073 16184117 chr3L 16188930 16188951 X-element 13 4857 5.0 3.0 4.0 2.6 4878 chr3L 16184073 intergenic not near genes chr3L 16186512 intergenic not near genes chr3L 16188951 intergenic not near genes chr3L_13_16185001 chr3L_16185001 RAL-443 1873 chr3L 16199147 16199199 chr3L 16199463 16199515 16 313 2.0 3.5 2.8 4.2 368 chr3L 16199147 intergenic CG33688 +,CG33687 + chr3L 16199331 exon CG33688 + chr3L 16199515 intron CG33688 + chr3L_16_16195001 chr3L_16195001 RAL-443 1874 chr3L 16212794 16212835 chr3L 16212905 16212946 16 108 7.0 0.5 3.8 3.3 152 chr3L 16212794 intergenic CG13073 - chr3L 16212870 intergenic CG13073 - chr3L 16212946 intergenic CG13073 - chr3L_16_16210001 chr3L_16210001 RAL-443 1875 chr3L 16359937 16360004 chr3L 16360227 16360261 5 280 0.0 4.0 2.0 1.7 324 chr3L 16359937 intron CG45057 - chr3L 16360099 intron CG45057 - chr3L 16360261 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-443 1876 chr3L 16443833 16443879 chr3L 16446188 16446239 Doc 23 2355 4.0 8.0 6.0 3.3 2406 chr3L 16443833 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446239 intron,intron CG33158 +,dsx-c73A - chr3L_23_16445001 chr3L_16445001 RAL-443 1877 chr3L 16493959 16494007 chr3L 16494496 16494532 jockey 12 529 5.5 8.5 7.0 1.5 573 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494246 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494532 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-443 1878 chr3L 16531326 16531380 chr3L 16531468 16531522 8 132 3.5 3.5 3.5 1.8 196 chr3L 16531326 intron CG43373 - chr3L 16531424 intron CG43373 - chr3L 16531522 intron CG43373 - chr3L_8_16530001 chr3L_16530001 RAL-443 1879 chr3L 16533445 16533447 chr3L 20579166 20579168 4 4045721 5.5 21.5 13.5 0.3 4045723 chr3L 16533445 intron CG43373 - chr3L 18556306 intergenic not near genes chr3L 20579168 intergenic not near genes chr3L_4_18555001 chr3L_18555001 RAL-443 1880 chr3L 16533546 16533586 chr3L 16533677 16533717 12 125 4.5 5.0 4.8 2.1 171 chr3L 16533546 intron CG43373 - chr3L 16533632 intron CG43373 - chr3L 16533717 intron CG43373 - chr3L_12_16530001 chr3L_16530001 RAL-443 1881 chr3L 16537834 16537880 chr3L 16537935 16537987 22 104 1.0 10.0 5.5 3.4 153 chr3L 16537834 intron CG43373 - chr3L 16537910 intron CG43373 - chr3L 16537987 intron CG43373 - chr3L_22_16535001 chr3L_16535001 RAL-443 1882 chr3L 16540033 16540088 chr3L 16540141 16540188 19 105 4.5 5.5 5.0 3.2 155 chr3L 16540033 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540188 intron CG43373 - chr3L_19_16540001 chr3L_16540001 RAL-443 1883 chr3L 16569853 16569904 chr3L 16569980 16570026 14 121 2.0 3.0 2.5 4.0 173 chr3L 16569853 intron Mipp1 - chr3L 16569940 intron Mipp1 - chr3L 16570026 intron Mipp1 - chr3L_14_16565001 chr3L_16565001 RAL-443 1884 chr3L 16616491 16616501 chr3L 16621839 16621846 297 4 5347 11.0 2.5 6.8 0.5 5355 chr3L 16616491 3` UTR Abl - chr3L 16619168 3` UTR Abl - chr3L 16621846 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-443 1885 chr3L 16616507 16616540 chr3L 16621836 16621888 297 7 5336 7.0 2.0 4.5 1.3 5381 chr3L 16616507 3` UTR Abl - chr3L 16619198 3` UTR Abl - chr3L 16621888 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-443 1886 chr3L 16652674 16652713 chr3L 16652773 16652807 8 98 9.0 7.5 8.2 0.9 133 chr3L 16652674 intron Baldspot - chr3L 16652740 intron Baldspot - chr3L 16652807 intron Baldspot - chr3L_8_16650001 chr3L_16650001 RAL-443 1887 chr3L 16684004 16684045 chr3L 16689245 16689286 copia 12 5239 5.5 6.0 5.8 1.8 5282 chr3L 16684004 intron,intron Lasp -,CG43954 - chr3L 16686645 intron,intron Lasp -,CG43954 - chr3L 16689286 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_12_16685001 chr3L_16685001 RAL-443 1888 chr3L 16757621 16757669 chr3L 16757731 16757779 21 107 4.0 5.0 4.5 3.8 158 chr3L 16757621 intergenic not near genes chr3L 16757700 intergenic not near genes chr3L 16757779 intergenic not near genes chr3L_21_16755001 chr3L_16755001 RAL-443 1889 chr3L 16772472 16772512 chr3L 16772582 16772622 11 106 6.0 3.0 4.5 2.0 150 chr3L 16772472 intron Nrt + chr3L 16772547 intron Nrt + chr3L 16772622 intron Nrt + chr3L_11_16770001 chr3L_16770001 RAL-443 1890 chr3L 16808022 16808029 chr3L 16808118 16808125 4 96 14.5 1.5 8.0 0.4 103 chr3L 16808022 intron nudC + chr3L 16808074 intron nudC + chr3L 16808125 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-443 1891 chr3L 16808030 16808055 chr3L 16808116 16808144 12 92 9.0 2.0 5.5 1.8 114 chr3L 16808030 intron nudC + chr3L 16808087 intron nudC + chr3L 16808144 intron nudC + chr3L_12_16805001 chr3L_16805001 RAL-443 1892 chr3L 16817855 16817885 chr3L 16818015 16818044 5 156 7.0 4.5 5.8 0.7 189 chr3L 16817855 intron,intron nudC +,CG13024 - chr3L 16817950 intron,intron nudC +,CG13024 - chr3L 16818044 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-443 1893 chr3L 16817892 16817908 chr3L 16818014 16818028 6 140 3.5 4.5 4.0 1.2 136 chr3L 16817892 intron,intron nudC +,CG13024 - chr3L 16817960 intron,intron nudC +,CG13024 - chr3L 16818028 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-443 1894 chr3L 16826449 16826501 chr3L 16826562 16826614 21 113 5.0 5.5 5.2 3.4 165 chr3L 16826449 intron CG13024 - chr3L 16826532 intron CG13024 - chr3L 16826614 intron CG13024 - chr3L_21_16825001 chr3L_16825001 RAL-443 1895 chr3L 16845001 16845043 chr3L 16845134 16845176 12 131 2.5 3.0 2.8 3.2 175 chr3L 16845001 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845176 intergenic CG9669 -,CG9715 + chr3L_12_16845001 chr3L_16845001 RAL-443 1896 chr3L 16861012 16861051 chr3L 16861134 16861162 14 119 3.5 5.0 4.2 2.7 150 chr3L 16861012 intron,exon Rh4 -,CG13029 + chr3L 16861087 intron,intron Rh4 -,CG13029 + chr3L 16861162 intron,exon Rh4 -,CG13029 + chr3L_14_16860001 chr3L_16860001 RAL-443 1897 chr3L 16866189 16866208 chr3L 16866300 16866319 7 111 10.0 1.0 5.5 1.1 130 chr3L 16866189 intron Lmpt + chr3L 16866254 intron Lmpt + chr3L 16866319 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-443 1898 chr3L 16869569 16869572 chr3L 16869671 16869675 4 103 11.0 6.0 8.5 0.4 106 chr3L 16869569 intron Lmpt + chr3L 16869622 intron Lmpt + chr3L 16869675 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-443 1899 chr3L 16869576 16869585 chr3L 16869667 16869687 4 99 9.0 5.5 7.2 0.5 111 chr3L 16869576 intron Lmpt + chr3L 16869632 intron Lmpt + chr3L 16869687 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-443 1900 chr3L 16869586 16869598 chr3L 16869663 16869701 13 95 7.5 4.5 6.0 1.9 115 chr3L 16869586 intron Lmpt + chr3L 16869644 intron Lmpt + chr3L 16869701 intron Lmpt + chr3L_13_16865001 chr3L_16865001 RAL-443 1901 chr3L 16869600 16869608 chr3L 16869658 16869711 8 93 6.5 3.5 5.0 1.3 111 chr3L 16869600 intron Lmpt + chr3L 16869656 intron Lmpt + chr3L 16869711 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-443 1902 chr3L 16894760 16894787 chr3L 16894857 16894870 6 92 9.0 0.0 4.5 1.1 110 chr3L 16894760 intron Lmpt + chr3L 16894815 intron Lmpt + chr3L 16894870 intron Lmpt + chr3L_6_16890001 chr3L_16890001 RAL-443 1903 chr3L 16912911 16912928 chr3L 16913009 16913025 7 97 0.0 2.0 1.0 3.5 114 chr3L 16912911 intron Lmpt + chr3L 16912968 intron Lmpt + chr3L 16913025 intron Lmpt + chr3L_7_16910001 chr3L_16910001 RAL-443 1904 chr3L 16912929 16912954 chr3L 16913007 16913052 8 93 0.0 2.0 1.0 4.0 123 chr3L 16912929 intron Lmpt + chr3L 16912990 intron Lmpt + chr3L 16913052 intron Lmpt + chr3L_8_16910001 chr3L_16910001 RAL-443 1905 chr3L 16941382 16941406 chr3L 16941503 16941527 5 121 1.0 0.0 0.5 3.3 145 chr3L 16941382 intron Cpr73D - chr3L 16941454 intron Cpr73D - chr3L 16941527 intron Cpr73D - chr3L_5_16940001 chr3L_16940001 RAL-443 1906 chr3L 16945724 16945761 chr3L 16954887 16954893 roo 11 9158 4.5 4.5 4.5 2.0 9169 chr3L 16945724 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-443 1907 chr3L 16973378 16973395 chr3L 23583083 23583100 6 6609703 9.5 21.0 15.2 0.4 6609722 chr3L 16973378 intron Exn + chr3L 20278239 exon gogo - chr3L 23583100 intron AGO3 + chr3L_6_20275001 chr3L_20275001 RAL-443 1908 chr3L 17034915 17034969 chr3L 17035123 17035177 G2 15 207 4.5 6.5 5.5 2.3 262 chr3L 17034915 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035177 intergenic beg + chr3L_15_17035001 chr3L_17035001 RAL-443 1909 chr3L 17084989 17085009 chr3L 17094158 17094178 roo 11 9168 17.0 6.5 11.8 0.9 9189 chr3L 17084989 intron Rbp6 - chr3L 17089584 intron Rbp6 - chr3L 17094178 intron Rbp6 - chr3L_11_17085001 chr3L_17085001 RAL-443 1910 chr3L 17085012 17085028 chr3L 17094155 17094197 roo 10 9166 12.0 5.5 8.8 1.0 9185 chr3L 17085012 intron Rbp6 - chr3L 17089604 intron Rbp6 - chr3L 17094197 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-443 1911 chr3L 17085029 17085036 chr3L 17094153 17094198 roo 7 9159 11.0 5.0 8.0 0.8 9169 chr3L 17085029 intron Rbp6 - chr3L 17089614 intron Rbp6 - chr3L 17094198 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-443 1912 chr3L 17149147 17149165 chr3L 17149248 17149266 9 99 11.5 0.0 5.8 1.3 119 chr3L 17149147 intron Rbp6 - chr3L 17149206 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-443 1913 chr3L 17237369 17237413 chr3L 17237541 17237585 6 172 2.5 0.0 1.2 2.7 216 chr3L 17237369 intron Rbp6 - chr3L 17237477 intron Rbp6 - chr3L 17237585 intron Rbp6 - chr3L_6_17235001 chr3L_17235001 RAL-443 1914 chr3L 17268977 17269023 chr3L 17269089 17269128 15 110 3.0 6.0 4.5 2.7 151 chr3L 17268977 intergenic not near genes chr3L 17269052 intergenic not near genes chr3L 17269128 intergenic not near genes chr3L_15_17265001 chr3L_17265001 RAL-443 1915 chr3L 17331067 17331095 chr3L 17331167 17331205 10 107 2.5 6.5 4.5 1.8 138 chr3L 17331067 intergenic not near genes chr3L 17331136 intergenic not near genes chr3L 17331205 intergenic not near genes chr3L_10_17330001 chr3L_17330001 RAL-443 1916 chr3L 17367423 17367460 chr3L 17367534 17367574 18 113 4.0 6.5 5.2 2.9 151 chr3L 17367423 intergenic CR45688 +,Cad74A - chr3L 17367498 intergenic CR45688 +,Cad74A - chr3L 17367574 intergenic Cad74A -,CR45688 + chr3L_18_17365001 chr3L_17365001 RAL-443 1917 chr3L 17402605 17402638 chr3L 17402703 17402741 6 97 1.0 1.0 1.0 3.0 136 chr3L 17402605 intron blot - chr3L 17402673 intron blot - chr3L 17402741 intron blot - chr3L_6_17400001 chr3L_17400001 RAL-443 1918 chr3L 17488043 17488093 chr3L 17488145 17488195 22 99 7.5 3.5 5.5 3.4 152 chr3L 17488043 intron Oatp74D + chr3L 17488119 5` UTR Oatp74D + chr3L 17488195 5` UTR Oatp74D + chr3L_22_17485001 chr3L_17485001 RAL-443 1919 chr3L 17498084 17498112 chr3L 17498181 17498209 10 95 2.5 4.0 3.2 2.4 125 chr3L 17498084 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498209 intron Oatp74D + chr3L_10_17495001 chr3L_17495001 RAL-443 1920 chr3L 17510731 17510763 chr3L 17510835 17510867 10 99 1.5 5.0 3.2 2.4 136 chr3L 17510731 exon Oatp74D + chr3L 17510799 intron Oatp74D + chr3L 17510867 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 RAL-443 1921 chr3L 17592788 17592820 chr3L 17592899 17592931 16 111 0.0 9.0 4.5 2.9 143 chr3L 17592788 intron Eip74EF - chr3L 17592860 intron Eip74EF - chr3L 17592931 intron Eip74EF - chr3L_16_17590001 chr3L_17590001 RAL-443 1922 chr3L 17691957 17691994 chr3L 17692061 17692098 14 100 7.5 9.0 8.2 1.5 141 chr3L 17691957 intron Ccn + chr3L 17692028 intron Ccn + chr3L 17692098 intron Ccn + chr3L_14_17690001 chr3L_17690001 RAL-443 1923 chr3L 17730829 17730874 chr3L 17738179 17738224 mdg1 22 7348 10.0 3.5 6.8 2.8 7395 chr3L 17730829 intron Ccn + chr3L 17734526 intron Ccn + chr3L 17738224 intron Ccn + chr3L_22_17730001 chr3L_17730001 RAL-443 1924 chr3L 17790605 17790631 chr3L 17790885 17790897 9 281 4.0 5.0 4.5 1.6 292 chr3L 17790605 intergenic CG42815 - chr3L 17790751 intergenic CG42815 - chr3L 17790897 intergenic CG42815 - chr3L_9_17790001 chr3L_17790001 RAL-443 1925 chr3L 17799793 17799842 chr3L 17801600 17801649 S-element 21 1802 4.5 5.5 5.0 3.5 1856 chr3L 17799793 intron NUCB1 - chr3L 17800721 intron NUCB1 - chr3L 17801649 intron NUCB1 - chr3L_21_17800001 chr3L_17800001 RAL-443 1926 chr3L 17836190 17836236 chr3L 17836287 17836317 20 93 5.5 6.5 6.0 2.9 127 chr3L 17836190 intron Grd + chr3L 17836254 intron Grd + chr3L 17836317 intron Grd + chr3L_20_17835001 chr3L_17835001 RAL-443 1927 chr3L 17884674 17884707 chr3L 17884794 17884827 12 119 4.5 5.0 4.8 2.1 153 chr3L 17884674 intergenic CG5506 - chr3L 17884750 intergenic CG5506 - chr3L 17884827 intergenic CG5506 - chr3L_12_17880001 chr3L_17880001 RAL-443 1928 chr3L 17887865 17887878 chr3L 17887970 17887983 6 105 6.0 7.5 6.8 0.8 118 chr3L 17887865 intron CG7402 + chr3L 17887924 intron CG7402 + chr3L 17887983 intron CG7402 + chr3L_6_17885001 chr3L_17885001 RAL-443 1929 chr3L 17918360 17918398 chr3L 17921183 17921221 opus 14 2819 2.0 6.0 4.0 2.8 2861 chr3L 17918360 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921221 intergenic not near genes chr3L_14_17915001 chr3L_17915001 RAL-443 1930 chr3L 17991558 17991585 chr3L 17991656 17991683 12 97 10.0 7.5 8.8 1.2 125 chr3L 17991558 intron Eip75B - chr3L 17991620 intron Eip75B - chr3L 17991683 intron Eip75B - chr3L_12_17990001 chr3L_17990001 RAL-443 1931 chr3L 17997273 17997318 chr3L 17997396 17997441 16 118 3.0 5.0 4.0 3.2 168 chr3L 17997273 intron Eip75B - chr3L 17997357 intron Eip75B - chr3L 17997441 intron Eip75B - chr3L_16_17995001 chr3L_17995001 RAL-443 1932 chr3L 18006201 18006252 chr3L 18006345 18006391 17 142 2.0 4.5 3.2 4.0 190 chr3L 18006201 intron Eip75B - chr3L 18006296 intron Eip75B - chr3L 18006391 intron Eip75B - chr3L_17_18005001 chr3L_18005001 RAL-443 1933 chr3L 18029942 18029982 chr3L 18030039 18030064 7 94 4.5 0.0 2.2 2.2 122 chr3L 18029942 intron Eip75B - chr3L 18030003 intron Eip75B - chr3L 18030064 intron Eip75B - chr3L_7_18030001 chr3L_18030001 RAL-443 1934 chr3L 18042231 18042249 chr3L 18042329 18042333 4 94 11.5 5.5 8.5 0.4 102 chr3L 18042231 intron Eip75B - chr3L 18042282 intron Eip75B - chr3L 18042333 intron Eip75B - chr3L_4_18040001 chr3L_18040001 RAL-443 1935 chr3L 18042253 18042499 chr3L 18042321 18042597 16 85 0.0 3.5 1.8 5.7 344 chr3L 18042253 intron Eip75B - chr3L 18042425 intron Eip75B - chr3L 18042597 intron Eip75B - chr3L_16_18040001 chr3L_18040001 RAL-443 1936 chr3L 18047688 18047734 chr3L 18056765 18056811 roo 15 9075 5.5 2.0 3.8 3.1 9123 chr3L 18047688 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056811 intron Eip75B - chr3L_15_18050001 chr3L_18050001 RAL-443 1937 chr3L 18119615 18119676 chr3L 18119747 18119794 11 122 0.0 4.0 2.0 3.7 179 chr3L 18119615 intron CG7341 + chr3L 18119704 intron CG7341 + chr3L 18119794 5` UTR CG7341 + chr3L_11_18115001 chr3L_18115001 RAL-443 1938 chr3L 18124402 18124428 chr3L 18124506 18124532 8 104 6.0 5.5 5.8 1.2 130 chr3L 18124402 intergenic not near genes chr3L 18124467 intergenic not near genes chr3L 18124532 intergenic not near genes chr3L_8_18120001 chr3L_18120001 RAL-443 1939 chr3L 18150382 18150392 chr3L 18150503 18150503 9 120 12.0 0.5 6.2 1.2 121 chr3L 18150382 intron CG7330 + chr3L 18150442 intron CG7330 + chr3L 18150503 intron CG7330 + chr3L_9_18150001 chr3L_18150001 RAL-443 1940 chr3L 18150396 18150428 chr3L 18150502 18150516 6 107 4.5 0.5 2.5 1.7 120 chr3L 18150396 intron CG7330 + chr3L 18150456 intron CG7330 + chr3L 18150516 intron CG7330 + chr3L_6_18150001 chr3L_18150001 RAL-443 1941 chr3L 18198930 18198931 chr3L 24821492 24821494 28 6622563 31.5 14.5 23.0 1.2 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_28_21510001 chr3L_21510001 RAL-443 1942 chr3L 18223147 18223185 chr3L 18223250 18223263 14 96 2.5 0.5 1.5 5.6 116 chr3L 18223147 intergenic not near genes chr3L 18223205 intergenic not near genes chr3L 18223263 intergenic not near genes chr3L_14_18220001 chr3L_18220001 RAL-443 1943 chr3L 18226660 18226666 chr3L 18226771 18226777 4 111 2.0 9.5 5.8 0.6 117 chr3L 18226660 intergenic not near genes chr3L 18226718 intergenic not near genes chr3L 18226777 intergenic not near genes chr3L_4_18225001 chr3L_18225001 RAL-443 1944 chr3L 18253664 18253715 chr3L 18253893 18253943 6 223 2.0 1.5 1.8 2.1 279 chr3L 18253664 intergenic not near genes chr3L 18253804 intergenic not near genes chr3L 18253943 intergenic not near genes chr3L_6_18250001 chr3L_18250001 RAL-443 1945 chr3L 18262450 18262487 chr3L 18262553 18262590 12 102 10.0 6.0 8.0 1.3 140 chr3L 18262450 intergenic not near genes chr3L 18262520 intergenic not near genes chr3L 18262590 intergenic not near genes chr3L_12_18260001 chr3L_18260001 RAL-443 1946 chr3L 18395915 18395967 chr3L 18396022 18396073 13 103 4.0 1.5 2.8 3.4 158 chr3L 18395915 intergenic not near genes chr3L 18395994 intergenic not near genes chr3L 18396073 intergenic not near genes chr3L_13_18395001 chr3L_18395001 RAL-443 1947 chr3L 18406111 18406154 chr3L 18406207 18406250 11 93 1.5 5.0 3.2 2.6 139 chr3L 18406111 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406250 intergenic not near genes chr3L_11_18405001 chr3L_18405001 RAL-443 1948 chr3L 18408715 18408761 chr3L 18408821 18408867 19 104 4.5 3.0 3.8 4.0 152 chr3L 18408715 intergenic not near genes chr3L 18408791 intergenic not near genes chr3L 18408867 intergenic not near genes chr3L_19_18405001 chr3L_18405001 RAL-443 1949 chr3L 9013689 9013693 chr3L 18417066 18417066 5 9403375 19.0 16.5 17.8 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-443 1950 chr3L 18437332 18437376 chr3L 18437440 18437484 15 108 3.5 4.5 4.0 3.0 152 chr3L 18437332 intergenic not near genes chr3L 18437408 intergenic not near genes chr3L 18437484 intergenic not near genes chr3L_15_18435001 chr3L_18435001 RAL-443 1951 chr3L 18445238 18445278 chr3L 18445326 18445326 13 89 9.0 3.5 6.2 1.8 88 chr3L 18445238 intergenic not near genes chr3L 18445282 intergenic not near genes chr3L 18445326 intergenic not near genes chr3L_13_18445001 chr3L_18445001 RAL-443 1952 chr3L 18448604 18448618 chr3L 18448716 18448730 6 112 9.0 7.0 8.0 0.7 126 chr3L 18448604 intergenic not near genes chr3L 18448667 intergenic not near genes chr3L 18448730 intergenic not near genes chr3L_6_18445001 chr3L_18445001 RAL-443 1953 chr3L 18456252 18456302 chr3L 18456360 18456404 9 104 1.5 4.0 2.8 2.4 152 chr3L 18456252 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456404 3` UTR CR44670 - chr3L_9_18455001 chr3L_18455001 RAL-443 1954 chr3L 18506148 18506160 chr3L 18509595 18509643 F-element 8 3467 4.5 4.5 4.5 1.5 3495 chr3L 18506148 intergenic not near genes chr3L 18507896 intergenic not near genes chr3L 18509643 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-443 1955 chr3L 18528615 18528657 chr3L 18537786 18537838 roo 25 9179 3.5 3.0 3.2 6.0 9223 chr3L 18528615 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537838 intergenic not near genes chr3L_25_18530001 chr3L_18530001 RAL-443 1956 chr3L 18585532 18585554 chr3L 18585628 18585645 11 94 6.5 3.0 4.8 1.9 113 chr3L 18585532 intergenic not near genes chr3L 18585588 intergenic not near genes chr3L 18585645 intergenic not near genes chr3L_11_18585001 chr3L_18585001 RAL-443 1957 chr3L 18593932 18593979 chr3L 18595932 18595958 Doc 16 1996 3.5 0.5 2.0 5.3 2026 chr3L 18593932 intergenic term - chr3L 18594945 intergenic not near genes chr3L 18595958 intergenic CR45389 + chr3L_16_18590001 chr3L_18590001 RAL-443 1958 chr3L 18625683 18625687 chr3L 18625788 18625792 4 105 0.0 0.0 0.0 4.0 109 chr3L 18625683 intergenic MYPT-75D + chr3L 18625738 intergenic MYPT-75D + chr3L 18625792 intergenic MYPT-75D + chr3L_4_18625001 chr3L_18625001 RAL-443 1959 chr3L 18638562 18638607 chr3L 18638676 18638719 16 108 4.5 5.0 4.8 2.8 157 chr3L 18638562 intron MYPT-75D + chr3L 18638640 intron MYPT-75D + chr3L 18638719 intron MYPT-75D + chr3L_16_18635001 chr3L_18635001 RAL-443 1960 chr3L 18656167 18656205 chr3L 18656272 18656310 7 104 6.5 3.5 5.0 1.2 143 chr3L 18656167 intron MYPT-75D + chr3L 18656238 intron MYPT-75D + chr3L 18656310 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-443 1961 chr3L 18701120 18701140 chr3L 18701222 18701229 8 103 3.5 3.0 3.2 1.9 109 chr3L 18701120 intergenic not near genes chr3L 18701174 intergenic not near genes chr3L 18701229 intergenic not near genes chr3L_8_18700001 chr3L_18700001 RAL-443 1962 chr3L 18710741 18710753 chr3L 18718713 18718725 Stalker2 11 7971 7.0 4.5 5.8 1.6 7984 chr3L 18710741 intergenic not near genes chr3L 18714733 intergenic not near genes chr3L 18718725 intergenic not near genes chr3L_11_18710001 chr3L_18710001 RAL-443 1963 chr3L 18710754 18710789 chr3L 18718710 18718761 Stalker2 12 7962 3.0 4.5 3.8 2.5 8007 chr3L 18710754 intergenic not near genes chr3L 18714758 intergenic not near genes chr3L 18718761 intergenic not near genes chr3L_12_18710001 chr3L_18710001 RAL-443 1964 chr3L 18721767 18721804 chr3L 18721862 18721915 13 106 2.5 8.5 5.5 2.0 148 chr3L 18721767 intergenic CG12477 - chr3L 18721841 intergenic CG12477 - chr3L 18721915 3` UTR CG12477 - chr3L_13_18720001 chr3L_18720001 RAL-443 1965 chr3L 18735777 18735780 chr3L 18735858 18735876 4 91 4.5 8.5 6.5 0.5 99 chr3L 18735777 intergenic not near genes chr3L 18735826 intergenic not near genes chr3L 18735876 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-443 1966 chr3L 18753534 18753558 chr3L 18753636 18753660 17 102 3.0 4.5 3.8 3.5 126 chr3L 18753534 intron ftz-f1 - chr3L 18753597 intron ftz-f1 - chr3L 18753660 intron ftz-f1 - chr3L_17_18750001 chr3L_18750001 RAL-443 1967 chr3L 18772394 18772433 chr3L 18781095 18781134 roo 18 8700 4.5 5.0 4.8 3.1 8740 chr3L 18772394 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781134 intron ftz-f1 - chr3L_18_18775001 chr3L_18775001 RAL-443 1968 chr3L 18833787 18833812 chr3L 18834945 18834985 1360 9 1170 3.5 4.0 3.8 1.9 1198 chr3L 18833787 intron Indy - chr3L 18834386 intron Indy - chr3L 18834985 intron Indy - chr3L_9_18830001 chr3L_18830001 RAL-443 1969 chr3L 18843860 18843880 chr3L 18843963 18843992 14 116 10.5 2.5 6.5 1.9 132 chr3L 18843860 intron Indy - chr3L 18843926 intron Indy - chr3L 18843992 intron Indy - chr3L_14_18840001 chr3L_18840001 RAL-443 1970 chr3L 18868945 18868996 chr3L 18869046 18869097 26 99 6.0 3.0 4.5 4.7 152 chr3L 18868945 3` UTR Dysb + chr3L 18869021 3` UTR Dysb + chr3L 18869097 3` UTR Dysb + chr3L_26_18865001 chr3L_18865001 RAL-443 1971 chr3L 18924464 18924509 chr3L 18924560 18924595 9 95 3.0 5.0 4.0 1.8 131 chr3L 18924464 intron CG32204 - chr3L 18924530 intron CG32204 - chr3L 18924595 intron CG32204 - chr3L_9_18920001 chr3L_18920001 RAL-443 1972 chr3L 18933611 18933657 chr3L 18933725 18933770 18 111 3.0 5.5 4.2 3.5 159 chr3L 18933611 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933770 intron CG32204 - chr3L_18_18930001 chr3L_18930001 RAL-443 1973 chr3L 18935819 18935864 chr3L 18935927 18935973 16 107 6.0 3.5 4.8 2.8 154 chr3L 18935819 intron CG32204 - chr3L 18935896 intron CG32204 - chr3L 18935973 intron CG32204 - chr3L_16_18935001 chr3L_18935001 RAL-443 1974 chr3L 18969617 18969621 chr3L 18969702 18969737 4 106 7.0 7.0 7.0 0.5 120 chr3L 18969617 intergenic not near genes chr3L 18969677 intergenic not near genes chr3L 18969737 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-443 1975 chr3L 19009955 19010006 chr3L 19010108 19010149 12 150 3.5 6.5 5.0 2.0 194 chr3L 19009955 intron nkd - chr3L 19010052 intron nkd - chr3L 19010149 intron nkd - chr3L_12_19010001 chr3L_19010001 RAL-443 1976 chr3L 19015161 19015185 chr3L 19015265 19015289 8 102 1.0 5.5 3.2 1.9 128 chr3L 19015161 intron nkd - chr3L 19015225 intron nkd - chr3L 19015289 intron nkd - chr3L_8_19015001 chr3L_19015001 RAL-443 1977 chr3L 19025916 19025965 chr3L 19026020 19026070 13 100 3.5 3.0 3.2 3.1 154 chr3L 19025916 intron nkd - chr3L 19025993 intron nkd - chr3L 19026070 intron nkd - chr3L_13_19025001 chr3L_19025001 RAL-443 1978 chr3L 19115636 19115647 chr3L 19115834 19115845 BS 6 198 9.5 6.5 8.0 0.7 209 chr3L 19115636 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-443 1979 chr3L 19117042 19117075 chr3L 19124489 19124542 mdg1 11 7457 3.0 4.5 3.8 2.3 7500 chr3L 19117042 intron CG14082 - chr3L 19120792 intron CG14082 - chr3L 19124542 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-443 1980 chr3L 19138571 19138585 chr3L 19138642 19138654 6 85 4.0 5.5 4.8 1.0 83 chr3L 19138571 intron CG14082 - chr3L 19138612 intron CG14082 - chr3L 19138654 intron CG14082 - chr3L_6_19135001 chr3L_19135001 RAL-443 1981 chr3L 19159824 19159869 chr3L 19159939 19159957 7 109 5.0 3.0 4.0 1.4 133 chr3L 19159824 intron fz2 - chr3L 19159890 intron fz2 - chr3L 19159957 intron fz2 - chr3L_7_19155001 chr3L_19155001 RAL-443 1982 chr3L 19182170 19182195 chr3L 19182278 19182303 15 107 9.0 5.5 7.2 1.8 133 chr3L 19182170 intron fz2 - chr3L 19182236 intron fz2 - chr3L 19182303 intron fz2 - chr3L_15_19180001 chr3L_19180001 RAL-443 1983 chr3L 19208043 19208054 chr3L 19209437 19209440 Doc 4 1389 4.0 3.5 3.8 0.8 1397 chr3L 19208043 intron fz2 - chr3L 19208742 intron fz2 - chr3L 19209440 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-443 1984 chr3L 19208055 19208081 chr3L 19209434 19209475 Doc 8 1389 2.5 3.5 3.0 2.0 1420 chr3L 19208055 intron fz2 - chr3L 19208765 intron fz2 - chr3L 19209475 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-443 1985 chr3L 19216495 19216523 chr3L 19216592 19216608 15 96 5.5 3.0 4.2 2.9 113 chr3L 19216495 intron fz2 - chr3L 19216552 intron fz2 - chr3L 19216608 intron fz2 - chr3L_15_19215001 chr3L_19215001 RAL-443 1986 chr3L 19218638 19218686 chr3L 19219388 19219436 8 744 5.0 6.0 5.5 1.2 798 chr3L 19218638 intron fz2 - chr3L 19219037 intron fz2 - chr3L 19219436 intron fz2 - chr3L_8_19215001 chr3L_19215001 RAL-443 1987 chr3L 19220632 19220635 chr3L 22908066 22908066 10 3687433 23.5 33.0 28.2 0.3 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-443 1988 chr3L 19220637 19220638 chr3L 22908066 22908067 7 3687429 23.5 33.0 28.2 0.2 3687430 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-443 1989 chr3L 19265251 19265300 chr3L 19268498 19268539 7 3250 21.0 23.5 22.2 0.3 3288 chr3L 19265251 3` UTR,exon CG42374 +,CG9666 + chr3L 19266895 exon CG9629 - chr3L 19268539 intron CG9629 - chr3L_7_19265001 chr3L_19265001 RAL-443 1990 chr3L 19365919 19365929 chr3L 19366036 19366046 9 116 0.0 6.5 3.2 2.1 127 chr3L 19365919 intron CG32206 - chr3L 19365982 intron CG32206 - chr3L 19366046 intron CG32206 - chr3L_9_19365001 chr3L_19365001 RAL-443 1991 chr3L 19404959 19405006 chr3L 19405051 19405095 24 92 4.5 5.0 4.8 4.1 136 chr3L 19404959 intron CG32206 - chr3L 19405027 intron CG32206 - chr3L 19405095 intron CG32206 - chr3L_24_19405001 chr3L_19405001 RAL-443 1992 chr3L 19443136 19443149 chr3L 19443236 19443252 5 101 5.5 3.5 4.5 0.9 116 chr3L 19443136 intron CG33062 - chr3L 19443194 intron CG33062 - chr3L 19443252 intron CG33062 - chr3L_5_19440001 chr3L_19440001 RAL-443 1993 chr3L 19443150 19443175 chr3L 19443231 19443278 9 97 2.0 3.0 2.5 2.6 128 chr3L 19443150 intron CG33062 - chr3L 19443214 intron CG33062 - chr3L 19443278 intron CG33062 - chr3L_9_19440001 chr3L_19440001 RAL-443 1994 chr3L 19460411 19460441 chr3L 19460506 19460537 7 97 6.0 8.0 7.0 0.9 126 chr3L 19460411 intergenic not near genes chr3L 19460474 intergenic not near genes chr3L 19460537 intergenic not near genes chr3L_7_19460001 chr3L_19460001 RAL-443 1995 chr3L 19462008 19462041 chr3L 19462143 19462176 5 135 4.0 13.0 8.5 0.5 168 chr3L 19462008 intergenic not near genes chr3L 19462092 intergenic not near genes chr3L 19462176 intergenic not near genes chr3L_5_19460001 chr3L_19460001 RAL-443 1996 chr3L 19579637 19579652 chr3L 19579771 19579785 6 132 9.0 5.5 7.2 0.7 148 chr3L 19579637 intron Shal - chr3L 19579711 intron Shal - chr3L 19579785 intron Shal - chr3L_6_19575001 chr3L_19575001 RAL-443 1997 chr3L 19579654 19579684 chr3L 19579768 19579810 12 127 3.5 5.0 4.2 2.3 156 chr3L 19579654 intron Shal - chr3L 19579732 intron Shal - chr3L 19579810 intron Shal - chr3L_12_19575001 chr3L_19575001 RAL-443 1998 chr3L 19636838 19636854 chr3L 19636941 19636965 4 114 15.0 13.0 14.0 0.3 127 chr3L 19636838 intergenic CG8786 - chr3L 19636902 intergenic CG8786 - chr3L 19636965 intergenic CG8786 - chr3L_4_19635001 chr3L_19635001 RAL-443 1999 chr3L 19687015 19687022 chr3L 19687095 19687121 4 96 2.5 5.5 4.0 0.8 106 chr3L 19687015 exon CG8765 - chr3L 19687068 exon CG8765 - chr3L 19687121 exon CG8765 - chr3L_4_19685001 chr3L_19685001 RAL-443 2000 chr3L 19820290 19820316 chr3L 19827859 19827869 412 8 7567 4.0 6.5 5.2 1.3 7579 chr3L 19820290 intron Deaf1 + chr3L 19824080 intron Deaf1 + chr3L 19827869 intron Deaf1 + chr3L_8_19820001 chr3L_19820001 RAL-443 2001 chr3L 19848498 19848532 chr3L 19857698 19857743 roo 11 9203 8.0 4.5 6.2 1.5 9245 chr3L 19848498 intron Papss + chr3L 19853120 intron Papss + chr3L 19857743 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-443 2002 chr3L 19861802 19861852 chr3L 19863610 19863660 S-element 19 1801 1.5 3.0 2.2 5.9 1858 chr3L 19861802 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863660 intergenic not near genes chr3L_19_19860001 chr3L_19860001 RAL-443 2003 chr3L 19958916 19958962 chr3L 19959026 19959072 14 108 8.5 2.0 5.2 2.3 156 chr3L 19958916 intron Ac76E + chr3L 19958994 intron Ac76E + chr3L 19959072 intron Ac76E + chr3L_14_19955001 chr3L_19955001 RAL-443 2004 chr3L 19960339 19960355 chr3L 19960459 19960513 5 148 2.0 2.0 2.0 1.7 174 chr3L 19960339 intron Ac76E + chr3L 19960426 intron Ac76E + chr3L 19960513 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-443 2005 chr3L 19960822 19960864 chr3L 19961507 19961547 9 680 6.5 4.0 5.2 1.5 725 chr3L 19960822 intron Ac76E + chr3L 19961184 intron Ac76E + chr3L 19961547 intron Ac76E + chr3L_9_19960001 chr3L_19960001 RAL-443 2006 chr3L 20061536 20061557 chr3L 20062196 20062231 7 668 3.5 7.5 5.5 1.1 695 chr3L 20061536 intron sNPF-R - chr3L 20061884 intron sNPF-R - chr3L 20062231 intron sNPF-R - chr3L_7_20060001 chr3L_20060001 RAL-443 2007 chr3L 20086766 20086819 chr3L 20086864 20086906 16 97 3.5 0.0 1.8 5.7 140 chr3L 20086766 intron sNPF-R - chr3L 20086836 intron sNPF-R - chr3L 20086906 intron sNPF-R - chr3L_16_20085001 chr3L_20085001 RAL-443 2008 chr3L 20113459 20113507 chr3L 20113574 20113622 19 113 9.0 4.0 6.5 2.5 163 chr3L 20113459 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113622 intergenic not near genes chr3L_19_20110001 chr3L_20110001 RAL-443 2009 chr3L 20113640 20113681 chr3L 20122917 20122958 roo 19 9276 8.0 9.0 8.5 2.0 9318 chr3L 20113640 intergenic not near genes chr3L 20118299 intergenic not near genes chr3L 20122958 intergenic not near genes chr3L_19_20115001 chr3L_20115001 RAL-443 2010 chr3L 20157951 20157962 chr3L 20158069 20158080 5 118 12.0 6.5 9.2 0.5 129 chr3L 20157951 intron CG42674 - chr3L 20158016 intron CG42674 - chr3L 20158080 intron CG42674 - chr3L_5_20155001 chr3L_20155001 RAL-443 2011 chr3L 20157964 20157997 chr3L 20158066 20158115 15 114 5.0 5.5 5.2 2.4 151 chr3L 20157964 intron CG42674 - chr3L 20158040 intron CG42674 - chr3L 20158115 intron CG42674 - chr3L_15_20155001 chr3L_20155001 RAL-443 2012 chr3L 20187444 20187486 chr3L 20187543 20187573 15 98 25.0 28.0 26.5 0.5 129 chr3L 20187444 intron CG42674 - chr3L 20187508 intron CG42674 - chr3L 20187573 intron CG42674 - chr3L_15_20185001 chr3L_20185001 RAL-443 2013 chr3L 20231069 20231114 chr3L 20231194 20231243 10 128 6.0 2.5 4.2 1.9 174 chr3L 20231069 intergenic not near genes chr3L 20231156 intergenic not near genes chr3L 20231243 intergenic CG13813 + chr3L_10_20230001 chr3L_20230001 RAL-443 2014 chr3L 20257318 20257333 chr3L 20258458 20258471 pogo 7 1140 7.0 5.0 6.0 1.0 1153 chr3L 20257318 intron rdgC + chr3L 20257894 intron rdgC + chr3L 20258471 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-443 2015 chr3L 20257342 20257363 chr3L 20258454 20258503 pogo 12 1133 2.5 4.5 3.5 2.7 1161 chr3L 20257342 intron rdgC + chr3L 20257922 intron rdgC + chr3L 20258503 intron rdgC + chr3L_12_20255001 chr3L_20255001 RAL-443 2016 chr3L 20283657 20283706 chr3L 20283761 20283810 14 101 6.0 5.5 5.8 2.1 153 chr3L 20283657 intron gogo - chr3L 20283734 intron gogo - chr3L 20283810 intron gogo - chr3L_14_20280001 chr3L_20280001 RAL-443 2017 chr3L 20395138 20395163 chr3L 20395257 20395282 13 117 8.5 3.0 5.8 1.9 144 chr3L 20395138 intergenic CR45677 - chr3L 20395210 intergenic CR45677 - chr3L 20395282 intergenic CR45677 - chr3L_13_20395001 chr3L_20395001 RAL-443 2018 chr3L 20395164 20395184 chr3L 20395251 20395303 14 112 5.0 1.5 3.2 3.3 139 chr3L 20395164 intergenic CR45677 - chr3L 20395234 intergenic CR45677 - chr3L 20395303 intergenic CR45677 - chr3L_14_20395001 chr3L_20395001 RAL-443 2019 chr3L 20409864 20409908 chr3L 20409970 20409993 9 99 2.0 1.5 1.8 3.2 129 chr3L 20409864 intron CG13248 - chr3L 20409928 intron CG13248 - chr3L 20409993 intron CG13248 - chr3L_9_20405001 chr3L_20405001 RAL-443 2020 chr3L 20462570 20462603 chr3L 20462671 20462699 12 100 7.5 0.5 4.0 2.4 129 chr3L 20462570 intron atk - chr3L 20462634 intron atk - chr3L 20462699 intron atk - chr3L_12_20460001 chr3L_20460001 RAL-443 2021 chr3L 20476734 20476781 chr3L 20484353 20484400 springer 18 7619 6.0 3.5 4.8 3.1 7666 chr3L 20476734 3` UTR isoQC + chr3L 20480567 intergenic not near genes chr3L 20484400 3` UTR ZnT77C - chr3L_18_20480001 chr3L_20480001 RAL-443 2022 chr3L 20525228 20525228 chr3L 22908066 22908066 7 2382838 11.5 33.0 22.2 0.3 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-443 2023 chr3L 20525228 20525228 chr3L 24821492 24821493 5 4296264 11.5 14.5 13.0 0.4 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-443 2024 chr3L 20525229 20525229 chr3L 22908066 22908067 14 2382837 11.0 33.0 22.0 0.6 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_14_21715001 chr3L_21715001 RAL-443 2025 chr3L 20525229 20525229 chr3L 24821492 24821494 10 4296264 11.0 14.5 12.8 0.7 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_10_22670001 chr3L_22670001 RAL-443 2026 chr3L 20525230 20525230 chr3L 22908066 22908067 5 2382836 10.5 33.0 21.8 0.2 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-443 2027 chr3L 20525230 20525230 chr3L 24821493 24821494 4 4296264 10.5 14.5 12.5 0.3 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-443 2028 chr3L 20548346 20548380 chr3L 20548455 20548489 9 107 7.0 6.0 6.5 1.2 143 chr3L 20548346 intergenic not near genes chr3L 20548418 intergenic not near genes chr3L 20548489 intergenic not near genes chr3L_9_20545001 chr3L_20545001 RAL-443 2029 chr3L 20570368 20570408 chr3L 20570471 20570505 7 99 7.0 2.0 4.5 1.3 137 chr3L 20570368 intergenic not near genes chr3L 20570436 intergenic not near genes chr3L 20570505 intergenic not near genes chr3L_7_20570001 chr3L_20570001 RAL-443 2030 chr3L 20752105 20752143 chr3L 20752198 20752231 5 83 1.5 3.0 2.2 1.6 126 chr3L 20752105 intergenic not near genes chr3L 20752168 intergenic not near genes chr3L 20752231 intergenic not near genes chr3L_5_20750001 chr3L_20750001 RAL-443 2031 chr3L 20821294 20821311 chr3L 20824763 20824800 NOF 9 3483 5.0 8.0 6.5 1.2 3506 chr3L 20821294 intron Pka-R1 + chr3L 20823047 intron Pka-R1 + chr3L 20824800 intron Pka-R1 + chr3L_9_20820001 chr3L_20820001 RAL-443 2032 chr3L 20849258 20849296 chr3L 20849351 20849395 15 96 5.5 5.5 5.5 2.3 137 chr3L 20849258 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849395 intron CG32432 - chr3L_15_20845001 chr3L_20845001 RAL-443 2033 chr3L 20861712 20861740 chr3L 20861801 20861843 4 98 4.5 5.5 5.0 0.7 131 chr3L 20861712 intron CG32432 - chr3L 20861778 intron CG32432 - chr3L 20861843 intron CG32432 - chr3L_4_20860001 chr3L_20860001 RAL-443 2034 chr3L 20890903 20890944 chr3L 20891020 20891069 6 118 2.0 5.0 3.5 1.3 166 chr3L 20890903 intergenic not near genes chr3L 20890986 intergenic not near genes chr3L 20891069 intergenic not near genes chr3L_6_20890001 chr3L_20890001 RAL-443 2035 chr3L 20913759 20913780 chr3L 20913839 20913857 8 90 3.5 4.0 3.8 1.7 98 chr3L 20913759 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913857 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-443 2036 chr3L 20917080 20917098 chr3L 20917177 20917193 6 93 11.0 8.0 9.5 0.6 113 chr3L 20917080 intergenic not near genes chr3L 20917136 intergenic not near genes chr3L 20917193 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-443 2037 chr3L 20917099 20917120 chr3L 20917175 20917217 6 91 2.5 8.0 5.2 1.0 118 chr3L 20917099 intergenic not near genes chr3L 20917158 intergenic not near genes chr3L 20917217 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-443 2038 chr3L 20931780 20931830 chr3L 20931883 20931933 14 101 5.5 1.5 3.5 3.1 153 chr3L 20931780 intron fng - chr3L 20931856 intron fng - chr3L 20931933 intron fng - chr3L_14_20930001 chr3L_20930001 RAL-443 2039 chr3L 20948653 20948696 chr3L 20948763 20948807 12 104 8.0 2.5 5.2 1.9 154 chr3L 20948653 intron fng - chr3L 20948730 intron fng - chr3L 20948807 intron fng - chr3L_12_20945001 chr3L_20945001 RAL-443 2040 chr3L 21082188 21082234 chr3L 21082286 21082327 16 97 3.5 2.0 2.8 4.2 139 chr3L 21082188 intron ko - chr3L 21082258 intron ko - chr3L 21082327 intron ko - chr3L_16_21080001 chr3L_21080001 RAL-443 2041 chr3L 21087788 21087825 chr3L 21087924 21087962 6 132 4.0 3.0 3.5 1.3 174 chr3L 21087788 intron ko - chr3L 21087875 intron ko - chr3L 21087962 intron ko - chr3L_6_21085001 chr3L_21085001 RAL-443 2042 chr3L 21151858 21151895 chr3L 21156962 21156999 flea 12 5102 5.5 11.0 8.2 1.3 5141 chr3L 21151858 intron Ac78C - chr3L 21154428 intron Ac78C - chr3L 21156999 intron Ac78C - chr3L_12_21150001 chr3L_21150001 RAL-443 2043 chr3L 21306143 21306178 chr3L 21315312 21315357 roo 17 9175 4.5 5.0 4.8 2.9 9214 chr3L 21306143 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310750 intron Pc - chr3L 21315357 3` UTR Pc - chr3L_17_21310001 chr3L_21310001 RAL-443 2044 chr3L 21319512 21319549 chr3L 21319621 21319643 16 108 7.5 6.5 7.0 2.0 131 chr3L 21319512 5` UTR Rab26 + chr3L 21319578 5` UTR Rab26 + chr3L 21319643 5` UTR Rab26 + chr3L_16_21315001 chr3L_21315001 RAL-443 2045 chr3L 21361705 21361750 chr3L 21362679 21362724 G2 14 966 6.0 6.5 6.2 1.9 1019 chr3L 21361705 intergenic CG32440 + chr3L 21362214 intergenic not near genes chr3L 21362724 intergenic not near genes chr3L_14_21360001 chr3L_21360001 RAL-443 2046 chr3L 21372704 21372753 chr3L 21379232 21379280 McClintock 10 6527 4.5 4.0 4.2 1.9 6576 chr3L 21372704 intergenic not near genes chr3L 21375992 intergenic not near genes chr3L 21379280 intergenic not near genes chr3L_10_21375001 chr3L_21375001 RAL-443 2047 chr3L 21406981 21407007 chr3L 21407080 21407099 9 95 11.5 3.5 7.5 1.1 118 chr3L 21406981 intron rgn + chr3L 21407040 intron rgn + chr3L 21407099 intron rgn + chr3L_9_21405001 chr3L_21405001 RAL-443 2048 chr3L 21407011 21407026 chr3L 21407071 21407119 6 86 5.5 3.5 4.5 1.1 108 chr3L 21407011 intron rgn + chr3L 21407065 intron rgn + chr3L 21407119 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-443 2049 chr3L 21412736 21412782 chr3L 21412834 21412880 12 92 1.0 4.5 2.8 3.2 144 chr3L 21412736 intron rgn + chr3L 21412808 intron rgn + chr3L 21412880 intron rgn + chr3L_12_21410001 chr3L_21410001 RAL-443 2050 chr3L 21415129 21415158 chr3L 21415221 21415261 11 100 3.0 8.0 5.5 1.7 132 chr3L 21415129 intron rgn + chr3L 21415195 intron rgn + chr3L 21415261 intron rgn + chr3L_11_21415001 chr3L_21415001 RAL-443 2051 chr3L 4341331 4341335 chr3L 21448026 21448026 7 17106694 18.5 26.0 22.2 0.3 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_7_12890001 chr3L_12890001 RAL-443 2052 chr3L 4341332 4341333 chr3L 21448027 21448027 9 17106695 19.0 25.5 22.2 0.4 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_9_12890001 chr3L_12890001 RAL-443 2053 chr3L 21458321 21458354 chr3L 21458436 21458442 INE-1 12 112 10.0 3.0 6.5 1.6 121 chr3L 21458321 intergenic not near genes chr3L 21458382 intergenic not near genes chr3L 21458442 intergenic not near genes chr3L_12_21455001 chr3L_21455001 RAL-443 2054 chr3L 21501158 21501169 chr3L 21501272 21501280 1360 5 111 7.0 19.0 13.0 0.4 122 chr3L 21501158 intron Glg1 - chr3L 21501219 intron Glg1 - chr3L 21501280 intron Glg1 - chr3L_5_21500001 chr3L_21500001 RAL-443 2055 chr3L 21637305 21637352 chr3L 21637412 21637458 17 106 4.5 5.0 4.8 2.9 153 chr3L 21637305 exon CG32444 + chr3L 21637382 intron CG32444 + chr3L 21637458 intron CG32444 + chr3L_17_21635001 chr3L_21635001 RAL-443 2056 chr3L 21671036 21671086 chr3L 21671204 21671254 19 166 7.0 10.5 8.8 1.9 218 chr3L 21671036 intergenic not near genes chr3L 21671145 intergenic not near genes chr3L 21671254 intergenic not near genes chr3L_19_21670001 chr3L_21670001 RAL-443 2057 chr3L 21736353 21736375 chr3L 21736559 21736596 5 211 1.0 9.0 5.0 0.8 243 chr3L 21736353 intergenic CR43888 + chr3L 21736474 intergenic CR43888 + chr3L 21736596 intergenic CR43888 + chr3L_5_21735001 chr3L_21735001 RAL-443 2058 chr3L 21749327 21749346 chr3L 21754482 21754501 Doc 4 5151 5.5 4.5 5.0 0.7 5174 chr3L 21749327 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754501 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-443 2059 chr3L 21769036 21769079 chr3L 21769143 21769186 24 106 8.0 5.5 6.8 3.1 150 chr3L 21769036 intron,intron Syn1 -,CG42689 + chr3L 21769111 intron,intron Syn1 -,CG42689 + chr3L 21769186 intron,intron Syn1 -,CG42689 + chr3L_24_21765001 chr3L_21765001 RAL-443 2060 chr3L 21799922 21799962 chr3L 21800027 21800052 16 102 6.5 4.5 5.5 2.5 130 chr3L 21799922 intergenic not near genes chr3L 21799987 intergenic not near genes chr3L 21800052 intergenic not near genes chr3L_16_21795001 chr3L_21795001 RAL-443 2061 chr3L 21824488 21824531 chr3L 21824597 21824635 11 112 6.0 4.5 5.2 1.8 147 chr3L 21824488 3` UTR CG7407 + chr3L 21824562 3` UTR CG7407 + chr3L 21824635 intergenic CG7407 +,CG7414 + chr3L_11_21820001 chr3L_21820001 RAL-443 2062 chr3L 21836708 21836763 chr3L 21836814 21836869 20 102 5.0 5.0 5.0 3.3 161 chr3L 21836708 3` UTR P5CDh1 - chr3L 21836788 3` UTR P5CDh1 - chr3L 21836869 3` UTR P5CDh1 - chr3L_20_21835001 chr3L_21835001 RAL-443 2063 chr3L 21871607 21871654 chr3L 21871708 21871710 7 82 2.0 0.5 1.2 3.2 103 chr3L 21871607 intron mub + chr3L 21871658 intron mub + chr3L 21871710 intron mub + chr3L_7_21870001 chr3L_21870001 RAL-443 2064 chr3L 21905325 21905357 chr3L 21905410 21905457 10 93 4.5 2.0 3.2 2.4 132 chr3L 21905325 intron mub + chr3L 21905391 intron mub + chr3L 21905457 intron mub + chr3L_10_21905001 chr3L_21905001 RAL-443 2065 chr3L 21950316 21950353 chr3L 21950413 21950449 15 94 4.5 3.5 4.0 3.0 133 chr3L 21950316 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950449 intron CG7448 + chr3L_15_21950001 chr3L_21950001 RAL-443 2066 chr3L 22018672 22018718 chr3L 22019049 22019095 8 374 2.0 5.0 3.5 1.8 423 chr3L 22018672 intergenic not near genes chr3L 22018884 intergenic not near genes chr3L 22019095 intergenic not near genes chr3L_8_22015001 chr3L_22015001 RAL-443 2067 chr3L 22099669 22099705 chr3L 22105862 22105870 3S18 17 6198 6.0 10.0 8.0 1.9 6201 chr3L 22099669 intergenic not near genes chr3L 22102770 intergenic not near genes chr3L 22105870 intergenic not near genes chr3L_17_22100001 chr3L_22100001 RAL-443 2068 chr3L 22130483 22130502 chr3L 22130649 22130668 6 165 4.5 2.0 3.2 1.4 185 chr3L 22130483 intergenic not near genes chr3L 22130576 intergenic not near genes chr3L 22130668 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-443 2069 chr3L 22130504 22130517 chr3L 22130645 22130683 4 160 3.0 2.0 2.5 1.1 179 chr3L 22130504 intergenic not near genes chr3L 22130594 intergenic not near genes chr3L 22130683 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-443 2070 chr3L 22207333 22207382 chr3L 22207444 22207478 10 110 7.0 1.5 4.2 1.9 145 chr3L 22207333 intron olf413 + chr3L 22207406 intron olf413 + chr3L 22207478 intron olf413 + chr3L_10_22205001 chr3L_22205001 RAL-443 2071 chr3L 22250977 22251028 chr3L 22251092 22251113 13 108 4.5 3.0 3.8 2.7 136 chr3L 22250977 intergenic not near genes chr3L 22251045 intergenic not near genes chr3L 22251113 intergenic not near genes chr3L_13_22250001 chr3L_22250001 RAL-443 2072 chr3L 22333048 22333072 chr3L 22333121 22333160 6 67 7.5 3.5 5.5 0.9 112 chr3L 22333048 intron Ten-m - chr3L 22333104 intron Ten-m - chr3L 22333160 intron Ten-m - chr3L_6_22330001 chr3L_22330001 RAL-443 2073 chr3L 22447190 22447199 chr3L 22447292 22447310 5 109 6.5 6.0 6.2 0.7 120 chr3L 22447190 intergenic not near genes chr3L 22447250 intergenic not near genes chr3L 22447310 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-443 2074 chr3L 22447200 22447232 chr3L 22447285 22447337 24 103 1.5 5.0 3.2 5.7 137 chr3L 22447200 intergenic not near genes chr3L 22447268 intergenic not near genes chr3L 22447337 intergenic not near genes chr3L_24_22445001 chr3L_22445001 RAL-443 2075 chr3L 22507128 22507154 chr3L 22507209 22507261 6 88 3.5 3.5 3.5 1.3 133 chr3L 22507128 intergenic not near genes chr3L 22507194 intergenic not near genes chr3L 22507261 intergenic not near genes chr3L_6_22505001 chr3L_22505001 RAL-443 2076 chr3L 22522677 22522720 chr3L 22522774 22522805 18 94 4.0 3.0 3.5 4.0 128 chr3L 22522677 intergenic not near genes chr3L 22522741 intergenic not near genes chr3L 22522805 intergenic not near genes chr3L_18_22520001 chr3L_22520001 RAL-443 2077 chr3L 22542879 22542915 chr3L 22543014 22543056 9 137 4.0 11.5 7.8 1.0 177 chr3L 22542879 intergenic not near genes chr3L 22542968 intergenic not near genes chr3L 22543056 intergenic not near genes chr3L_9_22540001 chr3L_22540001 RAL-443 2078 chr3L 22544379 22544388 chr3L 22544472 22544485 8 96 10.0 4.0 7.0 1.0 106 chr3L 22544379 intergenic not near genes chr3L 22544432 intergenic not near genes chr3L 22544485 intergenic not near genes chr3L_8_22540001 chr3L_22540001 RAL-443 2079 chr3L 22544391 22544420 chr3L 22544471 22544517 13 86 5.0 4.0 4.5 2.4 126 chr3L 22544391 intergenic not near genes chr3L 22544454 intergenic not near genes chr3L 22544517 intergenic not near genes chr3L_13_22540001 chr3L_22540001 RAL-443 2080 chr3L 22554405 22554454 chr3L 22554501 22554504 11 88 7.5 2.5 5.0 1.8 99 chr3L 22554405 intergenic not near genes chr3L 22554454 intergenic not near genes chr3L 22554504 intergenic not near genes chr3L_11_22550001 chr3L_22550001 RAL-443 2081 chr3L 22555757 22555791 chr3L 22563243 22563281 blood 6 7487 8.0 3.5 5.8 0.9 7524 chr3L 22555757 intergenic not near genes chr3L 22559519 intergenic not near genes chr3L 22563281 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-443 2082 chr3L 22569567 22569604 chr3L 22569675 22569717 13 111 0.5 0.5 0.5 8.7 150 chr3L 22569567 intergenic not near genes chr3L 22569642 intergenic not near genes chr3L 22569717 intergenic not near genes chr3L_13_22565001 chr3L_22565001 RAL-443 2083 chr3L 22577616 22577649 chr3L 22582407 22582432 Doc 8 4797 2.5 6.5 4.5 1.5 4816 chr3L 22577616 intergenic not near genes chr3L 22580024 intergenic not near genes chr3L 22582432 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-443 2084 chr3L 22617173 22617181 chr3L 22624645 22624653 blood 4 7472 10.5 4.5 7.5 0.5 7480 chr3L 22617173 intron CG14459 - chr3L 22620913 intron CG14459 - chr3L 22624653 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-443 2085 chr3L 22617182 22617222 chr3L 22624644 22624694 blood 14 7468 6.5 4.5 5.5 2.2 7512 chr3L 22617182 intron CG14459 - chr3L 22620938 intron CG14459 - chr3L 22624694 intron CG14459 - chr3L_14_22620001 chr3L_22620001 RAL-443 2086 chr3L 22732447 22732495 chr3L 22732548 22732596 23 99 4.5 4.0 4.2 4.4 149 chr3L 22732447 intron CG11367 + chr3L 22732522 intron CG11367 + chr3L 22732596 exon CG11367 + chr3L_23_22730001 chr3L_22730001 RAL-443 2087 chr3L 22756380 22756430 chr3L 22756477 22756527 17 92 5.5 4.0 4.8 2.9 147 chr3L 22756380 intron SPoCk + chr3L 22756454 intron SPoCk + chr3L 22756527 intron SPoCk + chr3L_17_22755001 chr3L_22755001 RAL-443 2088 chr3L 22760413 22760453 chr3L 22760518 22760558 12 103 5.5 5.5 5.5 1.8 145 chr3L 22760413 intron SPoCk + chr3L 22760486 intron SPoCk + chr3L 22760558 intron SPoCk + chr3L_12_22760001 chr3L_22760001 RAL-443 2089 chr3L 22761368 22761385 chr3L 22766822 22766839 Ivk 9 5453 14.5 5.0 9.8 0.8 5471 chr3L 22761368 intron SPoCk + chr3L 22764104 intron SPoCk + chr3L 22766839 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-443 2090 chr3L 22761386 22761421 chr3L 22766821 22766850 Ivk 21 5448 6.5 5.0 5.8 3.1 5464 chr3L 22761386 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766850 intron SPoCk + chr3L_21_22760001 chr3L_22760001 RAL-443 2091 chr3L 22838565 22838616 chr3L 22838666 22838717 5 94 3.0 4.0 3.5 1.1 152 chr3L 22838565 intergenic CG11226 + chr3L 22838641 intergenic CG11226 + chr3L 22838717 intergenic not near genes chr3L_5_22835001 chr3L_22835001 RAL-443 2092 chr3L 22853457 22853464 chr3L 22853553 22853560 5 103 7.0 6.0 6.5 0.7 103 chr3L 22853457 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853508 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853560 5` UTR CR43426 + chr3L_5_22850001 chr3L_22850001 RAL-443 2093 chr3L 22853470 22853713 chr3L 22853551 22853819 26 100 3.5 5.0 4.2 5.0 349 chr3L 22853470 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853644 5` UTR CR43426 + chr3L 22853819 5` UTR CR43426 + chr3L_26_22850001 chr3L_22850001 RAL-443 2094 chr3L 22865969 22865991 chr3L 22867121 22867138 Doc 12 1152 11.0 6.0 8.5 1.3 1169 chr3L 22865969 intron CG33170 + chr3L 22866554 intron CG33170 + chr3L 22867138 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-443 2095 chr3L 22865993 22866012 chr3L 22867120 22867155 Doc 6 1146 6.0 5.5 5.8 0.9 1162 chr3L 22865993 intron CG33170 + chr3L 22866574 intron CG33170 + chr3L 22867155 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-443 2096 chr3L 22897177 22897223 chr3L 22897278 22897326 12 97 4.5 2.5 3.5 2.7 149 chr3L 22897177 intergenic not near genes chr3L 22897252 intergenic not near genes chr3L 22897326 intergenic not near genes chr3L_12_22895001 chr3L_22895001 RAL-443 2097 chr3L 19220633 19220636 chr3L 22908066 22908066 7 3687432 23.0 33.0 28.0 0.2 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-443 2098 chr3L 20525228 20525230 chr3L 22908066 22908066 25 2382837 10.5 33.0 21.8 1.1 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_25_21715001 chr3L_21715001 RAL-443 2099 chr3L 22908066 22908066 chr3L 24821492 24821495 15 1913428 32.0 14.5 23.2 0.6 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_15_23860001 chr3L_23860001 RAL-443 2100 chr3L 19220633 19220636 chr3L 22908067 22908067 7 3687433 23.0 33.0 28.0 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-443 2101 chr3L 20525229 20525230 chr3L 22908067 22908067 10 2382837 10.5 33.0 21.8 0.4 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-443 2102 chr3L 22908067 22908067 chr3L 24821491 24821496 10 1913427 32.0 14.5 23.2 0.4 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_10_23860001 chr3L_23860001 RAL-443 2103 chr3L 22989847 22989866 chr3L 22996840 22996860 297 7 6991 10.0 5.5 7.8 0.8 7013 chr3L 22989847 intergenic not near genes chr3L 22993354 intergenic not near genes chr3L 22996860 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-443 2104 chr3L 22989868 22989892 chr3L 22996834 22996866 297 17 6980 4.5 5.0 4.8 2.9 6998 chr3L 22989868 intergenic not near genes chr3L 22993367 intergenic not near genes chr3L 22996866 intergenic not near genes chr3L_17_22990001 chr3L_22990001 RAL-443 2105 chr3L 23824011 23824033 chr3L 23824443 23824451 8 429 4.5 3.5 4.0 1.6 440 chr3L 23824011 intergenic not near genes chr3L 23824231 intergenic not near genes chr3L 23824451 intergenic not near genes chr3L_8_23820001 chr3L_23820001 RAL-443 2106 chr3L 23875517 23875551 chr3L 23875618 23875634 7 97 8.0 4.5 6.2 1.0 117 chr3L 23875517 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875634 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-443 2107 chr3L 24012400 24012438 chr3L 24020749 24020773 roo 6 8344 4.0 5.0 4.5 1.1 8373 chr3L 24012400 intergenic not near genes chr3L 24016586 intergenic not near genes chr3L 24020773 intergenic not near genes chr3L_6_24015001 chr3L_24015001 RAL-443 2108 chr3L 24791883 24791899 chr3L 24796682 24796698 Doc 9 4799 8.0 5.5 6.8 1.2 4815 chr3L 24791883 intergenic not near genes chr3L 24794290 intergenic not near genes chr3L 24796698 intergenic not near genes chr3L_9_24790001 chr3L_24790001 RAL-443 2109 chr3L 24791906 24791910 chr3L 24796674 24796709 Doc 4 4790 6.0 3.5 4.8 0.7 4803 chr3L 24791906 intergenic not near genes chr3L 24794308 intergenic not near genes chr3L 24796709 intergenic not near genes chr3L_4_24790001 chr3L_24790001 RAL-443 2110 chr3L 18198930 18198931 chr3L 24821492 24821492 9 6622562 31.5 14.5 23.0 0.4 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_9_21510001 chr3L_21510001 RAL-443 2111 chr3L 20525228 20525230 chr3L 24821492 24821492 11 4296263 10.5 14.5 12.5 0.8 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_11_22670001 chr3L_22670001 RAL-443 2112 chr3L 18198930 18198931 chr3L 24821493 24821493 18 6622562 31.5 14.5 23.0 0.8 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_18_21510001 chr3L_21510001 RAL-443 2113 chr3L 18198930 18198935 chr3L 24821494 24821494 5 6622562 32.0 14.5 23.2 0.2 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-443 2114 chr3L 20525228 20525230 chr3L 24821494 24821494 5 4296265 10.5 14.5 12.5 0.4 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-443 2115 chr3R 97110 97113 chr3R 99846 99849 12 2736 19.0 0.0 9.5 1.1 2739 chr3R 97110 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_12_95001 chr3R_95001 RAL-443 2116 chr3R 2998453 2998490 chr3R 2998549 2998585 9 94 4.0 4.5 4.2 1.7 132 chr3R 2998453 intron CG42618 - chr3R 2998519 intron CG42618 - chr3R 2998585 intron CG42618 - chr3R_9_2995001 chr3R_2995001 RAL-443 2117 chr3R 4063793 4063830 chr3R 4069093 4069100 6 5289 3.5 14.5 9.0 0.6 5307 chr3R 4063793 intergenic not near genes chr3R 4066446 intergenic not near genes chr3R 4069100 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-443 2118 chr3R 4132883 4132931 chr3R 4133057 4133105 18 173 1.0 2.5 1.8 6.4 222 chr3R 4132883 5` UTR Gfat1 + chr3R 4132994 intron Gfat1 + chr3R 4133105 intron Gfat1 + chr3R_18_4130001 chr3R_4130001 RAL-443 2119 chr3R 4206049 4206104 chr3R 4211644 4211679 mdg3 19 5592 4.5 4.5 4.5 3.5 5630 chr3R 4206049 intron CG14636 - chr3R 4208864 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_19_4205001 chr3R_4205001 RAL-443 2120 chr3R 4283873 4283894 chr3R 4284086 4284107 4 209 3.5 4.0 3.8 0.8 234 chr3R 4283873 intron cpx + chr3R 4283990 intron cpx + chr3R 4284107 intron cpx + chr3R_4_4280001 chr3R_4280001 RAL-443 2121 chr3R 4366741 4366791 chr3R 4375138 4375139 roo 20 8389 4.5 2.0 3.2 4.8 8398 chr3R 4366741 3` UTR CG1090 + chr3R 4370940 intergenic not near genes chr3R 4375139 5` UTR CR44922 + chr3R_20_4370001 chr3R_4370001 RAL-443 2122 chr3R 4408393 4408441 chr3R 4412717 4412754 Juan 16 4320 6.0 8.5 7.2 2.0 4361 chr3R 4408393 intron CG32944 - chr3R 4410574 intron CG32944 - chr3R 4412754 intron CG32944 - chr3R_16_4410001 chr3R_4410001 RAL-443 2123 chr3R 4474564 4474606 chr3R 4474849 4474891 4 284 2.5 2.5 2.5 1.1 327 chr3R 4474564 intron CG31523 - chr3R 4474728 intron CG31523 - chr3R 4474891 intron CG31523 - chr3R_4_4470001 chr3R_4470001 RAL-443 2124 chr3R 4512381 4512396 chr3R 4512606 4512618 6 227 7.5 0.0 3.8 1.2 237 chr3R 4512381 intron CG34357 - chr3R 4512500 intron CG34357 - chr3R 4512618 intron CG34357 - chr3R_6_4510001 chr3R_4510001 RAL-443 2125 chr3R 4609528 4609579 chr3R 4610712 4610763 1360 19 1179 10.5 7.0 8.8 1.9 1235 chr3R 4609528 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610763 intergenic not near genes chr3R_19_4610001 chr3R_4610001 RAL-443 2126 chr3R 4636580 4636626 chr3R 4637020 4637066 INE-1 31 438 5.5 5.0 5.2 5.0 486 chr3R 4636580 intergenic not near genes chr3R 4636823 intergenic not near genes chr3R 4637066 intergenic not near genes chr3R_31_4635001 chr3R_4635001 RAL-443 2127 chr3R 4678452 4678491 chr3R 4678823 4678855 10 368 3.0 3.5 3.2 2.4 403 chr3R 4678452 intron CG43427 + chr3R 4678654 intron CG43427 + chr3R 4678855 intron CG43427 + chr3R_10_4675001 chr3R_4675001 RAL-443 2128 chr3R 4753225 4753234 chr3R 4757548 4757557 F-element 4 4323 8.5 7.0 7.8 0.5 4332 chr3R 4753225 intron,intron atms +,CG44098 - chr3R 4755391 intron,intron atms +,CG44098 - chr3R 4757557 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-443 2129 chr3R 4753236 4753276 chr3R 4757547 4757557 F-element 7 4312 3.0 7.0 5.0 1.2 4321 chr3R 4753236 intron,intron atms +,CG44098 - chr3R 4755396 intron,intron atms +,CG44098 - chr3R 4757557 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-443 2130 chr3R 4759711 4759738 chr3R 4761216 4761249 hopper2 8 1513 5.0 8.0 6.5 1.1 1538 chr3R 4759711 intron,intron atms +,CG44098 - chr3R 4760480 intron,intron atms +,CG44098 - chr3R 4761249 intron,intron atms +,CG44098 - chr3R_8_4760001 chr3R_4760001 RAL-443 2131 chr3R 4769141 4769165 chr3R 4769239 4769256 5 96 6.5 4.5 5.5 0.8 115 chr3R 4769141 intron,intron atms +,CG44098 - chr3R 4769198 intron,intron atms +,CG44098 - chr3R 4769256 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-443 2132 chr3R 4769170 4769189 chr3R 4769236 4769287 6 87 3.0 4.0 3.5 1.3 117 chr3R 4769170 intron,intron atms +,CG44098 - chr3R 4769228 intron,intron atms +,CG44098 - chr3R 4769287 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-443 2133 chr3R 4861546 4861588 chr3R 4861647 4861664 5 91 2.5 1.5 2.0 1.7 118 chr3R 4861546 intron opa + chr3R 4861605 intron opa + chr3R 4861664 intron opa + chr3R_5_4860001 chr3R_4860001 RAL-443 2134 chr3R 4887476 4887500 chr3R 4894858 4894874 rover 6 7380 6.0 3.5 4.8 1.0 7398 chr3R 4887476 intergenic not near genes chr3R 4891175 intergenic not near genes chr3R 4894874 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-443 2135 chr3R 4896272 4896326 chr3R 4896385 4896412 16 108 5.5 2.5 4.0 3.2 140 chr3R 4896272 intergenic CR45580 + chr3R 4896342 intergenic CR45580 + chr3R 4896412 intergenic CR45580 + chr3R_16_4895001 chr3R_4895001 RAL-443 2136 chr3R 4944780 4944816 chr3R 4944888 4944909 17 104 4.5 3.5 4.0 3.4 129 chr3R 4944780 intron Cdep + chr3R 4944844 intron Cdep + chr3R 4944909 intron Cdep + chr3R_17_4940001 chr3R_4940001 RAL-443 2137 chr3R 4948361 4948392 chr3R 4949001 4949034 10 640 25.0 17.0 21.0 0.5 673 chr3R 4948361 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948698 intergenic UbcD6 - chr3R 4949034 3` UTR UbcD6 - chr3R_10_4945001 chr3R_4945001 RAL-443 2138 chr3R 4979991 4980016 chr3R 4980073 4980093 5 89 1.0 1.5 1.2 2.3 102 chr3R 4979991 intergenic not near genes chr3R 4980042 intergenic not near genes chr3R 4980093 intergenic not near genes chr3R_5_4980001 chr3R_4980001 RAL-443 2139 chr3R 4998374 4998382 chr3R 4998496 4998504 4 122 16.5 14.5 15.5 0.2 130 chr3R 4998374 intron CG2022 - chr3R 4998439 intron CG2022 - chr3R 4998504 intron CG2022 - chr3R_4_4995001 chr3R_4995001 RAL-443 2140 chr3R 5029565 5029605 chr3R 5029976 5029996 12 405 3.5 3.0 3.2 2.9 431 chr3R 5029565 intergenic not near genes chr3R 5029780 intergenic not near genes chr3R 5029996 intergenic not near genes chr3R_12_5025001 chr3R_5025001 RAL-443 2141 chr3R 5045828 5045846 chr3R 5052950 5052968 HMS-Beagle 5 7122 11.5 5.5 8.5 0.5 7140 chr3R 5045828 3` UTR CR43635 - chr3R 5049398 intergenic not near genes chr3R 5052968 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-443 2142 chr3R 5045852 5045876 chr3R 5052949 5052998 HMS-Beagle 11 7116 6.0 5.0 5.5 1.7 7146 chr3R 5045852 intron CR43635 - chr3R 5049425 intergenic not near genes chr3R 5052998 intergenic CR45588 - chr3R_11_5045001 chr3R_5045001 RAL-443 2143 chr3R 5067961 5068014 chr3R 5073498 5073544 mdg3 21 5531 6.5 1.5 4.0 4.2 5583 chr3R 5067961 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073544 intergenic not near genes chr3R_21_5070001 chr3R_5070001 RAL-443 2144 chr3R 5162915 5162968 chr3R 5163087 5163113 20 161 4.0 7.5 5.8 2.9 198 chr3R 5162915 intron dpr16 + chr3R 5163014 intron dpr16 + chr3R 5163113 intron dpr16 + chr3R_20_5160001 chr3R_5160001 RAL-443 2145 chr3R 5278067 5278120 chr3R 5278168 5278188 20 88 4.5 6.5 5.5 3.1 121 chr3R 5278067 intron mtd - chr3R 5278128 intron mtd - chr3R 5278188 intron mtd - chr3R_20_5275001 chr3R_5275001 RAL-443 2146 chr3R 5333863 5333910 chr3R 5333972 5334019 18 107 8.0 5.5 6.8 2.3 156 chr3R 5333863 intron mtd - chr3R 5333941 intron mtd - chr3R 5334019 intron mtd - chr3R_18_5330001 chr3R_5330001 RAL-443 2147 chr3R 5338381 5338422 chr3R 5343578 5343589 Rt1c 12 5193 8.0 6.5 7.2 1.5 5208 chr3R 5338381 intron mtd - chr3R 5340985 intron mtd - chr3R 5343589 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-443 2148 chr3R 5376752 5376779 chr3R 5376836 5376880 5 95 2.0 5.5 3.8 1.0 128 chr3R 5376752 intergenic 7B2 +,CG14667 + chr3R 5376816 5` UTR 7B2 + chr3R 5376880 5` UTR 7B2 + chr3R_5_5375001 chr3R_5375001 RAL-443 2149 chr3R 5385961 5386006 chr3R 5386142 5386197 12 183 4.0 5.0 4.5 2.2 236 chr3R 5385961 intron kkv - chr3R 5386079 intron kkv - chr3R 5386197 intron kkv - chr3R_12_5385001 chr3R_5385001 RAL-443 2150 chr3R 5445942 5445991 chr3R 5452422 5452471 Burdock 17 6477 6.5 2.0 4.2 3.3 6529 chr3R 5445942 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452471 intron CG14669 + chr3R_17_5445001 chr3R_5445001 RAL-443 2151 chr3R 5480218 5480236 chr3R 5480314 5480332 12 96 8.0 9.5 8.8 1.2 114 chr3R 5480218 intron,3` UTR Hcs +,ksr - chr3R 5480275 intron,3` UTR Hcs +,ksr - chr3R 5480332 intron,3` UTR Hcs +,ksr - chr3R_12_5480001 chr3R_5480001 RAL-443 2152 chr3R 5681889 5681908 chr3R 5681996 5682015 4 107 5.0 8.5 6.8 0.5 126 chr3R 5681889 exon Rab23 - chr3R 5681952 intron Rab23 - chr3R 5682015 intron Rab23 - chr3R_4_5680001 chr3R_5680001 RAL-443 2153 chr3R 5681910 5681925 chr3R 5681986 5682032 10 95 4.5 7.5 6.0 1.4 122 chr3R 5681910 exon Rab23 - chr3R 5681971 intron Rab23 - chr3R 5682032 intron Rab23 - chr3R_10_5680001 chr3R_5680001 RAL-443 2154 chr3R 5726083 5726124 chr3R 5726253 5726306 29 177 8.5 4.5 6.5 3.9 223 chr3R 5726083 intergenic not near genes chr3R 5726194 intergenic not near genes chr3R 5726306 intergenic not near genes chr3R_29_5725001 chr3R_5725001 RAL-443 2155 chr3R 5746006 5746044 chr3R 5746262 5746305 pogo 11 259 2.0 5.5 3.8 2.3 299 chr3R 5746006 3` UTR Madm + chr3R 5746156 3` UTR Madm + chr3R 5746305 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-443 2156 chr3R 5746996 5747042 chr3R 5753207 5753243 diver 18 6206 8.0 5.5 6.8 2.3 6247 chr3R 5746996 intergenic Madm + chr3R 5750120 intergenic not near genes chr3R 5753243 intergenic CG2091 - chr3R_18_5750001 chr3R_5750001 RAL-443 2157 chr3R 5772359 5772408 chr3R 5772537 5772586 14 178 5.0 5.5 5.2 2.3 227 chr3R 5772359 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772586 intron CG2082 - chr3R_14_5770001 chr3R_5770001 RAL-443 2158 chr3R 5809094 5809133 chr3R 5809355 5809375 pogo 8 256 4.5 8.0 6.2 1.1 281 chr3R 5809094 3` UTR CG11000 + chr3R 5809234 3` UTR CG11000 + chr3R 5809375 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-443 2159 chr3R 5809138 5809145 chr3R 5809353 5809391 pogo 4 246 3.5 7.5 5.5 0.6 253 chr3R 5809138 3` UTR CG11000 + chr3R 5809264 3` UTR CG11000 + chr3R 5809391 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-443 2160 chr3R 5822379 5822407 chr3R 5823551 5823594 1360 9 1182 7.0 11.5 9.2 0.9 1215 chr3R 5822379 3` UTR CG2023 - chr3R 5822986 3` UTR CG2023 - chr3R 5823594 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-443 2161 chr3R 5860578 5860579 chr3R 5860654 5860676 4 105 6.0 7.0 6.5 0.5 98 chr3R 5860578 intron CG2017 - chr3R 5860627 intron CG2017 - chr3R 5860676 intron CG2017 - chr3R_4_5860001 chr3R_5860001 RAL-443 2162 chr3R 5896965 5896996 chr3R 5897329 5897375 6 373 2.5 7.0 4.8 1.0 410 chr3R 5896965 intron CG34113 - chr3R 5897170 intron CG34113 - chr3R 5897375 intron CG34113 - chr3R_6_5895001 chr3R_5895001 RAL-443 2163 chr3R 5913749 5913797 chr3R 5913847 5913895 21 94 5.0 4.5 4.8 3.6 146 chr3R 5913749 intron CG34113 - chr3R 5913822 intron CG34113 - chr3R 5913895 intron CG34113 - chr3R_21_5910001 chr3R_5910001 RAL-443 2164 chr3R 5927544 5927553 chr3R 5927804 5927813 pogo 4 260 8.0 8.0 8.0 0.4 269 chr3R 5927544 intron CG34113 - chr3R 5927678 intron CG34113 - chr3R 5927813 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-443 2165 chr3R 5927555 5927587 chr3R 5927802 5927838 pogo 14 254 5.0 8.0 6.5 1.9 283 chr3R 5927555 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927838 intron CG34113 - chr3R_14_5925001 chr3R_5925001 RAL-443 2166 chr3R 5989316 5989367 chr3R 5989419 5989445 9 91 1.5 1.5 1.5 3.6 129 chr3R 5989316 5` UTR CR44927 + chr3R 5989380 5` UTR CR44927 + chr3R 5989445 5` UTR CR44927 + chr3R_9_5985001 chr3R_5985001 RAL-443 2167 chr3R 6175153 6175198 chr3R 6182445 6182463 HMS-Beagle2 13 7286 6.0 3.5 4.8 2.2 7310 chr3R 6175153 intergenic Osi1 + chr3R 6178808 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_13_6175001 chr3R_6175001 RAL-443 2168 chr3R 6191148 6191200 chr3R 6191248 6191300 19 98 7.5 6.0 6.8 2.4 152 chr3R 6191148 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191300 intron NPFR + chr3R_19_6190001 chr3R_6190001 RAL-443 2169 chr3R 6194467 6194479 chr3R 6194607 6194619 4 140 5.5 6.0 5.8 0.6 152 chr3R 6194467 intron NPFR + chr3R 6194543 intron NPFR + chr3R 6194619 intron NPFR + chr3R_4_6190001 chr3R_6190001 RAL-443 2170 chr3R 6194480 6194503 chr3R 6194606 6194643 17 138 5.0 6.0 5.5 2.6 163 chr3R 6194480 intron NPFR + chr3R 6194562 intron NPFR + chr3R 6194643 intron NPFR + chr3R_17_6190001 chr3R_6190001 RAL-443 2171 chr3R 6206280 6206318 chr3R 6206517 6206537 BS 10 233 3.0 8.5 5.8 1.5 257 chr3R 6206280 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206537 intron Osi24 + chr3R_10_6205001 chr3R_6205001 RAL-443 2172 chr3R 6357920 6357954 chr3R 6358010 6358025 7 87 8.0 3.0 5.5 1.1 105 chr3R 6357920 intron Pak + chr3R 6357972 intron Pak + chr3R 6358025 intron Pak + chr3R_7_6355001 chr3R_6355001 RAL-443 2173 chr3R 6494819 6494873 chr3R 6495033 6495076 27 212 5.0 6.5 5.8 4.0 257 chr3R 6494819 3` UTR CG15186 + chr3R 6494948 3` UTR CG15186 + chr3R 6495076 intergenic CG15186 + chr3R_27_6490001 chr3R_6490001 RAL-443 2174 chr3R 6510015 6510026 chr3R 6515109 6515127 jockey 4 5099 9.5 7.0 8.2 0.4 5112 chr3R 6510015 intergenic not near genes chr3R 6512571 intergenic not near genes chr3R 6515127 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-443 2175 chr3R 6571639 6571682 chr3R 6571843 6571886 15 201 5.5 4.5 5.0 2.5 247 chr3R 6571639 intron dpr11 - chr3R 6571762 intron dpr11 - chr3R 6571886 intron dpr11 - chr3R_15_6570001 chr3R_6570001 RAL-443 2176 chr3R 6624251 6624284 chr3R 6624353 6624379 15 100 4.5 8.0 6.2 2.1 128 chr3R 6624251 intergenic not near genes chr3R 6624315 intergenic not near genes chr3R 6624379 intergenic not near genes chr3R_15_6620001 chr3R_6620001 RAL-443 2177 chr3R 6689317 6689369 chr3R 6689419 6689470 16 97 4.0 3.5 3.8 3.3 153 chr3R 6689317 intergenic Ccp84Af - chr3R 6689394 intergenic Ccp84Af - chr3R 6689470 intergenic Ccp84Af - chr3R_16_6685001 chr3R_6685001 RAL-443 2178 chr3R 6705667 6705683 chr3R 6705911 6705927 5 244 1.0 4.0 2.5 1.4 260 chr3R 6705667 intergenic not near genes chr3R 6705797 intergenic not near genes chr3R 6705927 intergenic not near genes chr3R_5_6705001 chr3R_6705001 RAL-443 2179 chr3R 6705685 6705710 chr3R 6705908 6705954 12 242 0.0 3.0 1.5 4.8 269 chr3R 6705685 intergenic not near genes chr3R 6705820 intergenic not near genes chr3R 6705954 intergenic not near genes chr3R_12_6705001 chr3R_6705001 RAL-443 2180 chr3R 6737481 6737527 chr3R 6739288 6739333 Doc 6 1807 2.0 2.5 2.2 1.9 1852 chr3R 6737481 intron pb - chr3R 6738407 intron pb - chr3R 6739333 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-443 2181 chr3R 6828005 6828037 chr3R 6828101 6828133 13 96 3.5 2.0 2.8 3.4 128 chr3R 6828005 intron Scr - chr3R 6828069 intron Scr - chr3R 6828133 intron Scr - chr3R_13_6825001 chr3R_6825001 RAL-443 2182 chr3R 6856363 6856395 chr3R 6856500 6856532 11 135 7.0 5.0 6.0 1.6 169 chr3R 6856363 intergenic not near genes chr3R 6856448 intergenic not near genes chr3R 6856532 intergenic not near genes chr3R_11_6855001 chr3R_6855001 RAL-443 2183 chr3R 6858108 6858146 chr3R 6858209 6858219 16 100 5.5 5.5 5.5 2.5 111 chr3R 6858108 intergenic not near genes chr3R 6858164 intergenic not near genes chr3R 6858219 intergenic not near genes chr3R_16_6855001 chr3R_6855001 RAL-443 2184 chr3R 6891216 6891266 chr3R 6891312 6891340 8 92 3.0 1.0 2.0 2.7 124 chr3R 6891216 intergenic not near genes chr3R 6891278 intergenic not near genes chr3R 6891340 intergenic not near genes chr3R_8_6890001 chr3R_6890001 RAL-443 2185 chr3R 6958912 6958924 chr3R 6959143 6959155 9 230 10.5 7.5 9.0 0.9 243 chr3R 6958912 intron Antp - chr3R 6959034 intron Antp - chr3R 6959155 intron Antp - chr3R_9_6955001 chr3R_6955001 RAL-443 2186 chr3R 6958933 6958937 chr3R 6959139 6959152 4 220 7.5 7.5 7.5 0.5 219 chr3R 6958933 intron Antp - chr3R 6959042 intron Antp - chr3R 6959152 intron Antp - chr3R_4_6955001 chr3R_6955001 RAL-443 2187 chr3R 6990444 6990490 chr3R 6990554 6990600 15 109 1.5 2.0 1.8 5.4 156 chr3R 6990444 intron Antp - chr3R 6990522 intron Antp - chr3R 6990600 intron Antp - chr3R_15_6990001 chr3R_6990001 RAL-443 2188 chr3R 6991155 6991204 chr3R 6991251 6991275 9 90 5.0 2.0 3.5 2.0 120 chr3R 6991155 intron Antp - chr3R 6991215 intron Antp - chr3R 6991275 intron Antp - chr3R_9_6990001 chr3R_6990001 RAL-443 2189 chr3R 7008253 7008301 chr3R 7008362 7008410 11 104 3.5 3.5 3.5 2.4 157 chr3R 7008253 intergenic not near genes chr3R 7008332 intergenic not near genes chr3R 7008410 intergenic not near genes chr3R_11_7005001 chr3R_7005001 RAL-443 2190 chr3R 7026864 7026887 chr3R 7026940 7026962 8 88 4.0 3.5 3.8 1.7 98 chr3R 7026864 intergenic not near genes chr3R 7026913 intergenic not near genes chr3R 7026962 intergenic not near genes chr3R_8_7025001 chr3R_7025001 RAL-443 2191 chr3R 7036745 7036785 chr3R 7036844 7036884 16 95 3.5 6.0 4.8 2.8 139 chr3R 7036745 intergenic not near genes chr3R 7036814 intergenic not near genes chr3R 7036884 intergenic not near genes chr3R_16_7035001 chr3R_7035001 RAL-443 2192 chr3R 7060236 7060282 chr3R 7060337 7060372 11 100 3.0 2.0 2.5 3.1 136 chr3R 7060236 3` UTR dj + chr3R 7060304 3` UTR dj + chr3R 7060372 3` UTR dj + chr3R_11_7060001 chr3R_7060001 RAL-443 2193 chr3R 7092771 7092813 chr3R 7093350 7093384 21 575 2.5 6.0 4.2 4.0 613 chr3R 7092771 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093384 3` UTR CR43685 - chr3R_21_7090001 chr3R_7090001 RAL-443 2194 chr3R 7103286 7103320 chr3R 7103362 7103371 11 78 7.0 8.0 7.5 1.3 85 chr3R 7103286 intron Alh - chr3R 7103328 intron Alh - chr3R 7103371 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-443 2195 chr3R 7126484 7126533 chr3R 7126599 7126648 28 111 3.5 6.0 4.8 4.8 164 chr3R 7126484 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126648 3` UTR CG10068 - chr3R_28_7125001 chr3R_7125001 RAL-443 2196 chr3R 7173659 7173705 chr3R 7173759 7173805 10 100 3.5 6.5 5.0 1.7 146 chr3R 7173659 intron sas + chr3R 7173732 intron sas + chr3R 7173805 intron sas + chr3R_10_7170001 chr3R_7170001 RAL-443 2197 chr3R 7217437 7217489 chr3R 7217678 7217725 12 238 1.5 4.0 2.8 3.2 288 chr3R 7217437 intergenic CG14605 -,CG14606 - chr3R 7217581 intergenic CG14605 -,CG14606 - chr3R 7217725 3` UTR CG14605 - chr3R_12_7215001 chr3R_7215001 RAL-443 2198 chr3R 7370188 7370240 chr3R 7370486 7370538 22 294 6.5 4.5 5.5 3.4 350 chr3R 7370188 intergenic not near genes chr3R 7370363 intergenic not near genes chr3R 7370538 intergenic not near genes chr3R_22_7370001 chr3R_7370001 RAL-443 2199 chr3R 7447971 7448012 chr3R 7448069 7448100 28 94 4.5 9.0 6.8 3.6 129 chr3R 7447971 intergenic not near genes chr3R 7448036 intergenic not near genes chr3R 7448100 intergenic not near genes chr3R_28_7445001 chr3R_7445001 RAL-443 2200 chr3R 7580342 7580385 chr3R 7580644 7580652 5 291 5.0 4.0 4.5 0.9 310 chr3R 7580342 intron CG34127 - chr3R 7580497 intron CG34127 - chr3R 7580652 intron CG34127 - chr3R_5_7580001 chr3R_7580001 RAL-443 2201 chr3R 7677899 7677946 chr3R 7678032 7678033 8 123 3.0 7.0 5.0 1.3 134 chr3R 7677899 intron Nlg1 + chr3R 7677966 intron Nlg1 + chr3R 7678033 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-443 2202 chr3R 7680857 7680859 chr3R 7681478 7681479 4 625 1.0 1.5 1.2 1.8 622 chr3R 7680857 intron Nlg1 + chr3R 7681168 intron Nlg1 + chr3R 7681479 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-443 2203 chr3R 7694560 7694609 chr3R 7713641 7713690 invader3 5 19081 4.0 3.0 3.5 1.1 19130 chr3R 7694560 3` UTR Nlg1 + chr3R 7704125 intergenic not near genes chr3R 7713690 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-443 2204 chr3R 7729455 7729496 chr3R 7737403 7737454 Stalker2 16 7957 6.5 9.0 7.8 1.8 7999 chr3R 7729455 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737454 intergenic not near genes chr3R_16_7730001 chr3R_7730001 RAL-443 2205 chr3R 7773344 7773344 chr3R 7890531 7890535 8 117190 19.5 11.0 15.2 0.5 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_8_7830001 chr3R_7830001 RAL-443 2206 chr3R 7973314 7973339 chr3R 7974386 7974421 1360 12 1081 9.0 7.0 8.0 1.3 1107 chr3R 7973314 intergenic not near genes chr3R 7973868 intergenic not near genes chr3R 7974421 3` UTR CD98hc - chr3R_12_7970001 chr3R_7970001 RAL-443 2207 chr3R 8090255 8090270 chr3R 8090452 8090467 8 197 7.0 4.0 5.5 1.2 212 chr3R 8090255 5` UTR CR44330 + chr3R 8090361 intergenic CR44330 + chr3R 8090467 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-443 2208 chr3R 8090274 8090304 chr3R 8090450 8090491 15 192 3.0 4.0 3.5 3.3 217 chr3R 8090274 5` UTR CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090491 intergenic CR44330 + chr3R_15_8090001 chr3R_8090001 RAL-443 2209 chr3R 8094394 8094435 chr3R 8099719 8099760 Transpac 17 5325 5.5 4.5 5.0 2.8 5366 chr3R 8094394 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099760 intron CG7900 + chr3R_17_8095001 chr3R_8095001 RAL-443 2210 chr3R 8101754 8101791 chr3R 8104858 8104879 G2 7 3098 2.0 3.5 2.8 1.8 3125 chr3R 8101754 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104879 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-443 2211 chr3R 8107368 8107416 chr3R 8107522 8107570 15 154 4.5 5.0 4.8 2.6 202 chr3R 8107368 intron puc + chr3R 8107469 intron puc + chr3R 8107570 intron puc + chr3R_15_8105001 chr3R_8105001 RAL-443 2212 chr3R 8207547 8207583 chr3R 8208398 8208448 F-element 6 860 3.5 2.5 3.0 1.5 901 chr3R 8207547 intergenic not near genes chr3R 8207998 intergenic not near genes chr3R 8208448 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-443 2213 chr3R 8287348 8287383 chr3R 8287474 8287509 9 125 7.5 6.5 7.0 1.1 161 chr3R 8287348 5` UTR CR44318 + chr3R 8287428 intron CR44318 + chr3R 8287509 5` UTR CR44318 + chr3R_9_8285001 chr3R_8285001 RAL-443 2214 chr3R 8307201 8307229 chr3R 8307306 8307339 5 100 1.0 5.0 3.0 1.2 138 chr3R 8307201 intergenic tex - chr3R 8307270 intergenic tex - chr3R 8307339 intergenic tex - chr3R_5_8305001 chr3R_8305001 RAL-443 2215 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568289 19.5 24.5 22.0 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-443 2216 chr3R 8402997 8403039 chr3R 8412177 8412214 roo 11 9182 3.0 3.0 3.0 2.8 9217 chr3R 8402997 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412214 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-443 2217 chr3R 8506713 8506755 chr3R 8506997 8507024 13 277 5.0 6.5 5.8 1.9 311 chr3R 8506713 intergenic not near genes chr3R 8506868 intergenic not near genes chr3R 8507024 intergenic not near genes chr3R_13_8505001 chr3R_8505001 RAL-443 2218 chr3R 8570469 8570510 chr3R 8575114 8575158 HMS-Beagle 6 4642 3.5 2.0 2.8 1.6 4689 chr3R 8570469 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575158 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-443 2219 chr3R 8601756 8601798 chr3R 8610929 8610966 roo 9 9168 3.0 7.0 5.0 1.5 9210 chr3R 8601756 intron 5-HT2B + chr3R 8606361 intron 5-HT2B + chr3R 8610966 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-443 2220 chr3R 8614795 8614804 chr3R 8615002 8615003 4 207 0.5 10.0 5.2 0.6 208 chr3R 8614795 intron 5-HT2B + chr3R 8614899 intron 5-HT2B + chr3R 8615003 intron 5-HT2B + chr3R_4_8610001 chr3R_8610001 RAL-443 2221 chr3R 8707337 8707391 chr3R 8709798 8709811 jockey 8 2449 1.0 3.5 2.2 2.5 2474 chr3R 8707337 intergenic not near genes chr3R 8708574 intergenic not near genes chr3R 8709811 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-443 2222 chr3R 8811209 8811234 chr3R 8811321 8811326 4 106 6.5 1.5 4.0 0.8 117 chr3R 8811209 intron CG9837 - chr3R 8811268 intron CG9837 - chr3R 8811326 intron CG9837 - chr3R_4_8810001 chr3R_8810001 RAL-443 2223 chr3R 8898208 8898213 chr3R 8913803 8913812 297 4 15598 9.5 1.0 5.2 0.6 15604 chr3R 8898208 intron pyd - chr3R 8906010 intron pyd - chr3R 8913812 intron pyd - chr3R_4_8905001 chr3R_8905001 RAL-443 2224 chr3R 9036716 9036746 chr3R 9036810 9036862 10 113 1.5 6.0 3.8 2.1 146 chr3R 9036716 intron neur - chr3R 9036789 intron neur - chr3R 9036862 intron neur - chr3R_10_9035001 chr3R_9035001 RAL-443 2225 chr3R 9101821 9101869 chr3R 9101939 9101987 15 114 4.5 4.0 4.2 2.9 166 chr3R 9101821 intron pum - chr3R 9101904 intron pum - chr3R 9101987 intron pum - chr3R_15_9100001 chr3R_9100001 RAL-443 2226 chr3R 9108847 9108874 chr3R 9108943 9108970 15 96 10.0 2.5 6.2 2.1 123 chr3R 9108847 intron pum - chr3R 9108908 intron pum - chr3R 9108970 intron pum - chr3R_15_9105001 chr3R_9105001 RAL-443 2227 chr3R 9141119 9141172 chr3R 9141223 9141276 15 102 7.5 5.5 6.5 2.0 157 chr3R 9141119 intron pum - chr3R 9141198 intron pum - chr3R 9141276 intron pum - chr3R_15_9140001 chr3R_9140001 RAL-443 2228 chr3R 9197736 9197789 chr3R 9197843 9197896 17 104 6.0 5.0 5.5 2.6 160 chr3R 9197736 intron pum - chr3R 9197816 intron pum - chr3R 9197896 intron pum - chr3R_17_9195001 chr3R_9195001 RAL-443 2229 chr3R 9275324 9275346 chr3R 9275436 9275458 6 112 9.0 5.0 7.0 0.8 134 chr3R 9275324 intergenic not near genes chr3R 9275391 intergenic not near genes chr3R 9275458 intergenic not near genes chr3R_6_9275001 chr3R_9275001 RAL-443 2230 chr3R 9275355 9275371 chr3R 9275432 9275483 11 107 3.0 4.5 3.8 2.3 128 chr3R 9275355 intergenic not near genes chr3R 9275419 intergenic not near genes chr3R 9275483 intergenic not near genes chr3R_11_9275001 chr3R_9275001 RAL-443 2231 chr3R 9278768 9278809 chr3R 9284047 9284059 Rt1a 9 5274 9.0 9.0 9.0 0.9 5291 chr3R 9278768 intergenic not near genes chr3R 9281414 intergenic not near genes chr3R 9284059 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-443 2232 chr3R 9304520 9304550 chr3R 9311822 9311824 Stalker4 4 7296 9.5 5.0 7.2 0.5 7304 chr3R 9304520 intron CG8861 - chr3R 9308172 intron CG8861 - chr3R 9311824 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-443 2233 chr3R 9319558 9319603 chr3R 9320013 9320033 jockey 16 452 10.0 7.0 8.5 1.7 475 chr3R 9319558 intron CG8861 - chr3R 9319796 intron CG8861 - chr3R 9320033 intron CG8861 - chr3R_16_9315001 chr3R_9315001 RAL-443 2234 chr3R 9361805 9361843 chr3R 9362063 9362104 pogo 23 259 4.5 8.5 6.5 3.1 299 chr3R 9361805 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362104 3` UTR CG45050 + chr3R_23_9360001 chr3R_9360001 RAL-443 2235 chr3R 9379126 9379172 chr3R 9379228 9379274 5 98 0.0 4.5 2.2 1.6 148 chr3R 9379126 intron FER - chr3R 9379200 intron FER - chr3R 9379274 intron FER - chr3R_5_9375001 chr3R_9375001 RAL-443 2236 chr3R 9611868 9611903 chr3R 9611969 9611995 12 99 7.0 0.0 3.5 2.7 127 chr3R 9611868 intron CG8312 + chr3R 9611932 intron CG8312 + chr3R 9611995 intron CG8312 + chr3R_12_9610001 chr3R_9610001 RAL-443 2237 chr3R 9646677 9646711 chr3R 9646967 9647016 11 298 4.0 5.0 4.5 2.0 339 chr3R 9646677 intron Dh44 + chr3R 9646846 intron Dh44 + chr3R 9647016 intron Dh44 + chr3R_11_9645001 chr3R_9645001 RAL-443 2238 chr3R 9702246 9702293 chr3R 9702342 9702370 13 92 5.5 5.0 5.2 2.1 124 chr3R 9702246 intron Unc-115a - chr3R 9702308 intron Unc-115a - chr3R 9702370 intron Unc-115a - chr3R_13_9700001 chr3R_9700001 RAL-443 2239 chr3R 9885646 9885650 chr3R 9885738 9885754 4 101 6.0 12.0 9.0 0.4 108 chr3R 9885646 intron Glut4EF + chr3R 9885700 intron Glut4EF + chr3R 9885754 intron Glut4EF + chr3R_4_9885001 chr3R_9885001 RAL-443 2240 chr3R 9898767 9898813 chr3R 9898879 9898925 14 110 6.5 5.0 5.8 2.1 158 chr3R 9898767 intron Glut4EF + chr3R 9898846 intron Glut4EF + chr3R 9898925 intron Glut4EF + chr3R_14_9895001 chr3R_9895001 RAL-443 2241 chr3R 10073759 10073778 chr3R 10073887 10073907 10 128 7.0 8.5 7.8 1.1 148 chr3R 10073759 3` UTR nerfin-2 + chr3R 10073833 3` UTR CG5361 - chr3R 10073907 exon CG5361 - chr3R_10_10070001 chr3R_10070001 RAL-443 2242 chr3R 10073779 10073786 chr3R 10073883 10073915 4 123 6.0 7.0 6.5 0.5 136 chr3R 10073779 intergenic nerfin-2 +,CG5361 - chr3R 10073847 3` UTR CG5361 - chr3R 10073915 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-443 2243 chr3R 10073787 10073802 chr3R 10073879 10073915 7 121 4.5 6.5 5.5 1.1 128 chr3R 10073787 intergenic nerfin-2 +,CG5361 - chr3R 10073851 3` UTR CG5361 - chr3R 10073915 exon CG5361 - chr3R_7_10070001 chr3R_10070001 RAL-443 2244 chr3R 10151095 10151118 chr3R 10151161 10151215 16 84 3.5 5.5 4.5 2.9 120 chr3R 10151095 intron Invadolysin + chr3R 10151155 intron,exon Invadolysin +,CG34303 - chr3R 10151215 intron,exon Invadolysin +,CG34303 - chr3R_16_10150001 chr3R_10150001 RAL-443 2245 chr3R 10183085 10183111 chr3R 10183182 10183197 11 95 4.5 3.0 3.8 2.3 112 chr3R 10183085 intron CG12814 - chr3R 10183141 intron CG12814 - chr3R 10183197 intron CG12814 - chr3R_11_10180001 chr3R_10180001 RAL-443 2246 chr3R 10187037 10187078 chr3R 10187133 10187175 21 96 5.5 6.0 5.8 3.1 138 chr3R 10187037 intron CG12814 - chr3R 10187106 intron CG12814 - chr3R 10187175 intron CG12814 - chr3R_21_10185001 chr3R_10185001 RAL-443 2247 chr3R 10231769 10231812 chr3R 10237366 10237403 mdg3 16 5591 4.0 4.0 4.0 3.2 5634 chr3R 10231769 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237403 intron CG42795 + chr3R_16_10230001 chr3R_10230001 RAL-443 2248 chr3R 10255373 10255387 chr3R 10260833 10260847 I-element 7 5460 8.5 4.5 6.5 0.9 5474 chr3R 10255373 3` UTR Sirt6 - chr3R 10258110 intron Sirt6 - chr3R 10260847 exon Sirt6 - chr3R_7_10255001 chr3R_10255001 RAL-443 2249 chr3R 10275559 10275568 chr3R 10275656 10275665 5 97 14.5 16.0 15.2 0.3 106 chr3R 10275559 intron CG43143 + chr3R 10275612 intron CG43143 + chr3R 10275665 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-443 2250 chr3R 10275570 10275582 chr3R 10275636 10275679 7 82 10.5 10.0 10.2 0.6 109 chr3R 10275570 intron CG43143 + chr3R 10275624 intron CG43143 + chr3R 10275679 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-443 2251 chr3R 10531864 10531865 chr3R 10531955 10531966 4 97 8.5 0.5 4.5 0.7 102 chr3R 10531864 intron hth - chr3R 10531915 intron hth - chr3R 10531966 intron hth - chr3R_4_10530001 chr3R_10530001 RAL-443 2252 chr3R 10531866 10531895 chr3R 10531951 10531991 13 98 4.0 0.5 2.2 4.1 125 chr3R 10531866 intron hth - chr3R 10531928 intron hth - chr3R 10531991 intron hth - chr3R_13_10530001 chr3R_10530001 RAL-443 2253 chr3R 10535317 10535343 chr3R 10535430 10535455 15 112 1.5 6.5 4.0 3.0 138 chr3R 10535317 intron hth - chr3R 10535386 intron hth - chr3R 10535455 intron hth - chr3R_15_10535001 chr3R_10535001 RAL-443 2254 chr3R 10563437 10563492 chr3R 10563555 10563605 11 108 3.5 1.5 2.5 3.1 168 chr3R 10563437 intron hth - chr3R 10563521 intron hth - chr3R 10563605 intron hth - chr3R_11_10560001 chr3R_10560001 RAL-443 2255 chr3R 10785793 10785837 chr3R 10785892 10785931 19 97 8.5 11.0 9.8 1.8 138 chr3R 10785793 intron Rbp1 + chr3R 10785862 intron Rbp1 + chr3R 10785931 intron Rbp1 + chr3R_19_10785001 chr3R_10785001 RAL-443 2256 chr3R 10804158 10804185 chr3R 10811710 10811737 17.6 8 7552 3.0 4.5 3.8 1.7 7579 chr3R 10804158 intergenic CG14692 - chr3R 10807948 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_8_10805001 chr3R_10805001 RAL-443 2257 chr3R 10804188 10804203 chr3R 10811709 10811755 17.6 7 7547 2.5 4.5 3.5 1.6 7567 chr3R 10804188 intergenic CG14692 - chr3R 10807972 intergenic not near genes chr3R 10811755 3` UTR CG14693 - chr3R_7_10805001 chr3R_10805001 RAL-443 2258 chr3R 10886864 10886904 chr3R 10886964 10887004 10 99 4.5 6.0 5.2 1.6 140 chr3R 10886864 intron Leash + chr3R 10886934 intron Leash + chr3R 10887004 intron Leash + chr3R_10_10885001 chr3R_10885001 RAL-443 2259 chr3R 10900433 10900475 chr3R 10900529 10900562 8 93 5.5 9.0 7.2 1.0 129 chr3R 10900433 intergenic not near genes chr3R 10900498 intergenic not near genes chr3R 10900562 intergenic not near genes chr3R_8_10900001 chr3R_10900001 RAL-443 2260 chr3R 10942213 10942250 chr3R 10942304 10942352 25 99 8.0 7.0 7.5 2.9 139 chr3R 10942213 intergenic not near genes chr3R 10942282 intergenic not near genes chr3R 10942352 intergenic not near genes chr3R_25_10940001 chr3R_10940001 RAL-443 2261 chr3R 10984373 10984408 chr3R 10984487 10984487 6 113 2.0 3.5 2.8 1.6 114 chr3R 10984373 intron CG34114 + chr3R 10984430 intron CG34114 + chr3R 10984487 intron CG34114 + chr3R_6_10980001 chr3R_10980001 RAL-443 2262 chr3R 11043098 11043122 chr3R 11043204 11043248 4 116 1.0 2.0 1.5 1.6 150 chr3R 11043098 intron CG34114 + chr3R 11043173 intron CG34114 + chr3R 11043248 intron CG34114 + chr3R_4_11040001 chr3R_11040001 RAL-443 2263 chr3R 11056877 11056897 chr3R 11056975 11056984 7 96 5.5 0.5 3.0 1.8 107 chr3R 11056877 intergenic not near genes chr3R 11056930 intergenic not near genes chr3R 11056984 intergenic not near genes chr3R_7_11055001 chr3R_11055001 RAL-443 2264 chr3R 11085452 11085478 chr3R 11085549 11085570 7 95 5.5 9.5 7.5 0.8 118 chr3R 11085452 3` UTR CR44940 - chr3R 11085511 intergenic CR44940 - chr3R 11085570 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-443 2265 chr3R 11085479 11085492 chr3R 11085540 11085589 5 81 3.0 5.0 4.0 1.0 110 chr3R 11085479 3` UTR CR44940 - chr3R 11085534 intergenic CR44940 - chr3R 11085589 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-443 2266 chr3R 11088653 11088667 chr3R 11088765 11088779 8 112 10.5 4.5 7.5 0.9 126 chr3R 11088653 exon CG43449 + chr3R 11088716 3` UTR CG43449 + chr3R 11088779 3` UTR CG43449 + chr3R_8_11085001 chr3R_11085001 RAL-443 2267 chr3R 11088669 11088694 chr3R 11088761 11088790 9 106 6.0 4.0 5.0 1.5 121 chr3R 11088669 exon CG43449 + chr3R 11088730 3` UTR CG43449 + chr3R 11088790 3` UTR CG43449 + chr3R_9_11085001 chr3R_11085001 RAL-443 2268 chr3R 11090825 11090874 chr3R 11090933 11090973 16 101 5.5 7.0 6.2 2.2 148 chr3R 11090825 intergenic not near genes chr3R 11090899 intergenic not near genes chr3R 11090973 intergenic not near genes chr3R_16_11090001 chr3R_11090001 RAL-443 2269 chr3R 11140870 11140905 chr3R 11140972 11141007 11 100 3.0 8.0 5.5 1.7 137 chr3R 11140870 intergenic not near genes chr3R 11140938 intergenic not near genes chr3R 11141007 intergenic not near genes chr3R_11_11140001 chr3R_11140001 RAL-443 2270 chr3R 11142501 11142546 chr3R 11142629 11142668 11 127 3.0 1.5 2.2 3.4 167 chr3R 11142501 intergenic not near genes chr3R 11142584 intergenic not near genes chr3R 11142668 intergenic not near genes chr3R_11_11140001 chr3R_11140001 RAL-443 2271 chr3R 11151670 11151700 chr3R 11156543 11156573 11 4878 40.5 29.0 34.8 0.3 4903 chr3R 11151670 3` UTR Ugt86Di - chr3R 11154122 intergenic Ugt86Di - chr3R 11156573 intergenic Ugt86Dc + chr3R_11_11150001 chr3R_11150001 RAL-443 2272 chr3R 11174573 11174615 chr3R 11175307 11175344 8 731 22.0 19.0 20.5 0.4 771 chr3R 11174573 exon Ugt86Dj - chr3R 11174958 intron Ugt86Dj - chr3R 11175344 exon Ugt86Dj - chr3R_8_11170001 chr3R_11170001 RAL-443 2273 chr3R 11379226 11379259 chr3R 11388390 11388433 roo 14 9168 6.5 9.0 7.8 1.6 9207 chr3R 11379226 intron pros + chr3R 11383830 intron pros + chr3R 11388433 intron pros + chr3R_14_11380001 chr3R_11380001 RAL-443 2274 chr3R 11461545 11461588 chr3R 11461676 11461682 12 115 3.5 3.0 3.2 2.9 137 chr3R 11461545 intron CG17230 + chr3R 11461614 intron CG17230 + chr3R 11461682 intron CG17230 + chr3R_12_11460001 chr3R_11460001 RAL-443 2275 chr3R 11476930 11476971 chr3R 11477052 11477093 22 120 5.5 7.0 6.2 3.1 163 chr3R 11476930 intergenic not near genes chr3R 11477012 intergenic not near genes chr3R 11477093 intergenic not near genes chr3R_22_11475001 chr3R_11475001 RAL-443 2276 chr3R 11694708 11694754 chr3R 11694821 11694837 19 109 4.0 7.5 5.8 2.8 129 chr3R 11694708 intergenic Fer3 - chr3R 11694772 intergenic Fer3 - chr3R 11694837 intergenic not near genes chr3R_19_11690001 chr3R_11690001 RAL-443 2277 chr3R 11710211 11710233 chr3R 11710288 11710331 5 85 5.0 3.0 4.0 1.0 120 chr3R 11710211 intergenic not near genes chr3R 11710271 intergenic not near genes chr3R 11710331 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-443 2278 chr3R 11801639 11801691 chr3R 11801798 11801850 22 154 4.0 5.0 4.5 4.0 211 chr3R 11801639 intron ClC-a - chr3R 11801744 intron ClC-a - chr3R 11801850 intron ClC-a - chr3R_22_11800001 chr3R_11800001 RAL-443 2279 chr3R 11830344 11830356 chr3R 11830438 11830454 7 97 4.5 4.0 4.2 1.3 110 chr3R 11830344 intron CG6959 - chr3R 11830399 intron CG6959 - chr3R 11830454 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-443 2280 chr3R 11841044 11841092 chr3R 11846253 11846303 BS 8 5202 2.5 2.5 2.5 2.3 5259 chr3R 11841044 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846303 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-443 2281 chr3R 11853434 11853473 chr3R 11853592 11853593 17 161 0.0 7.5 3.8 3.5 159 chr3R 11853434 intron CG6959 - chr3R 11853514 intron CG6959 - chr3R 11853593 intron CG6959 - chr3R_17_11850001 chr3R_11850001 RAL-443 2282 chr3R 11853750 11853802 chr3R 11853875 11853918 18 119 10.5 10.0 10.2 1.6 168 chr3R 11853750 intron CG6959 - chr3R 11853834 intron CG6959 - chr3R 11853918 intron CG6959 - chr3R_18_11850001 chr3R_11850001 RAL-443 2283 chr3R 11945365 11945405 chr3R 11945483 11945523 15 113 3.0 6.0 4.5 2.7 158 chr3R 11945365 intron Cad87A - chr3R 11945444 intron Cad87A - chr3R 11945523 intron Cad87A - chr3R_15_11945001 chr3R_11945001 RAL-443 2284 chr3R 11957838 11957878 chr3R 11958136 11958170 S-element 10 295 5.5 1.0 3.2 2.4 332 chr3R 11957838 intergenic not near genes chr3R 11958004 intergenic not near genes chr3R 11958170 intergenic not near genes chr3R_10_11955001 chr3R_11955001 RAL-443 2285 chr3R 12022865 12022882 chr3R 12025062 12025079 pogo 8 2197 7.5 4.0 5.8 1.2 2214 chr3R 12022865 intergenic not near genes chr3R 12023972 intergenic not near genes chr3R 12025079 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-443 2286 chr3R 12022884 12022916 chr3R 12025061 12025113 pogo 13 2189 2.5 4.0 3.2 3.1 2229 chr3R 12022884 intergenic not near genes chr3R 12023998 intergenic not near genes chr3R 12025113 intergenic not near genes chr3R_13_12020001 chr3R_12020001 RAL-443 2287 chr3R 12045157 12045170 chr3R 12045253 12045266 4 96 11.0 7.0 9.0 0.4 109 chr3R 12045157 intergenic not near genes chr3R 12045212 intergenic not near genes chr3R 12045266 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-443 2288 chr3R 12045176 12045202 chr3R 12045252 12045298 19 94 5.5 6.5 6.0 2.7 122 chr3R 12045176 intergenic not near genes chr3R 12045237 intergenic not near genes chr3R 12045298 intergenic not near genes chr3R_19_12045001 chr3R_12045001 RAL-443 2289 chr3R 12081997 12082025 chr3R 12082076 12082081 7 81 1.5 4.5 3.0 1.8 84 chr3R 12081997 intron CG14741 - chr3R 12082039 intron CG14741 - chr3R 12082081 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-443 2290 chr3R 12113997 12114037 chr3R 12114102 12114142 10 101 5.5 6.5 6.0 1.4 145 chr3R 12113997 intergenic not near genes chr3R 12114070 intergenic not near genes chr3R 12114142 intergenic not near genes chr3R_10_12110001 chr3R_12110001 RAL-443 2291 chr3R 12183170 12183204 chr3R 12183276 12183310 11 101 3.0 6.0 4.5 2.0 140 chr3R 12183170 intergenic not near genes chr3R 12183240 intergenic not near genes chr3R 12183310 intergenic not near genes chr3R_11_12180001 chr3R_12180001 RAL-443 2292 chr3R 12267836 12267884 chr3R 12267936 12267984 17 98 5.0 3.5 4.2 3.3 148 chr3R 12267836 intron svp + chr3R 12267910 intron svp + chr3R 12267984 intron svp + chr3R_17_12265001 chr3R_12265001 RAL-443 2293 chr3R 12274045 12274065 chr3R 12274130 12274132 4 76 4.5 0.0 2.2 1.2 87 chr3R 12274045 intron svp + chr3R 12274088 intron svp + chr3R 12274132 intron svp + chr3R_4_12270001 chr3R_12270001 RAL-443 2294 chr3R 12344109 12344158 chr3R 12344206 12344255 11 88 3.5 4.5 4.0 2.2 146 chr3R 12344109 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344255 intergenic not near genes chr3R_11_12340001 chr3R_12340001 RAL-443 2295 chr3R 12392882 12392899 chr3R 12392991 12393003 4 108 6.5 11.0 8.8 0.4 121 chr3R 12392882 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392942 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393003 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-443 2296 chr3R 12599009 12599032 chr3R 12599145 12599171 5 138 1.5 2.0 1.8 1.8 162 chr3R 12599009 intergenic not near genes chr3R 12599090 intergenic not near genes chr3R 12599171 intergenic not near genes chr3R_5_12595001 chr3R_12595001 RAL-443 2297 chr3R 12733468 12733503 chr3R 12733553 12733560 5 80 2.0 4.5 3.2 1.2 92 chr3R 12733468 intergenic not near genes chr3R 12733514 intergenic not near genes chr3R 12733560 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-443 2298 chr3R 12739019 12739066 chr3R 12739115 12739152 25 95 9.5 10.5 10.0 2.3 133 chr3R 12739019 intergenic not near genes chr3R 12739086 intergenic not near genes chr3R 12739152 intergenic CG5724 + chr3R_25_12735001 chr3R_12735001 RAL-443 2299 chr3R 12763114 12763153 chr3R 12763211 12763250 16 97 0.0 7.5 3.8 3.3 136 chr3R 12763114 intron beat-Vc - chr3R 12763182 intron beat-Vc - chr3R 12763250 intron beat-Vc - chr3R_16_12760001 chr3R_12760001 RAL-443 2300 chr3R 12787942 12787949 chr3R 12788045 12788052 4 103 0.0 7.0 3.5 0.9 110 chr3R 12787942 intergenic not near genes chr3R 12787997 intergenic not near genes chr3R 12788052 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-443 2301 chr3R 12819010 12819045 chr3R 12819113 12819147 8 103 1.5 5.5 3.5 1.8 137 chr3R 12819010 intergenic not near genes chr3R 12819078 intergenic not near genes chr3R 12819147 intergenic not near genes chr3R_8_12815001 chr3R_12815001 RAL-443 2302 chr3R 12864548 12864575 chr3R 12865053 12865080 roo 5 504 2.5 2.5 2.5 1.4 532 chr3R 12864548 intergenic not near genes chr3R 12864814 intergenic not near genes chr3R 12865080 intergenic not near genes chr3R_5_12860001 chr3R_12860001 RAL-443 2303 chr3R 12866468 12866518 chr3R 12866639 12866689 15 170 3.0 4.0 3.5 3.3 221 chr3R 12866468 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866689 intergenic not near genes chr3R_15_12865001 chr3R_12865001 RAL-443 2304 chr3R 12883774 12883806 chr3R 12883913 12883914 7 132 3.0 2.5 2.8 1.8 140 chr3R 12883774 intergenic not near genes chr3R 12883844 intergenic not near genes chr3R 12883914 intergenic not near genes chr3R_7_12880001 chr3R_12880001 RAL-443 2305 chr3R 12920151 12920186 chr3R 12925356 12925357 copia 6 5205 2.0 2.0 2.0 2.0 5206 chr3R 12920151 intron beat-Vb + chr3R 12922754 intron beat-Vb + chr3R 12925357 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-443 2306 chr3R 13045795 13045803 chr3R 13053024 13053029 4 7228 25.0 36.5 30.8 0.1 7234 chr3R 13045795 exon Hsc70-2 + chr3R 13049412 3` UTR CG7966 - chr3R 13053029 exon pic + chr3R_4_13045001 chr3R_13045001 RAL-443 2307 chr3R 13059942 13059958 chr3R 13060157 13060173 4 214 3.5 3.0 3.2 1.0 231 chr3R 13059942 intron sim + chr3R 13060058 intron sim + chr3R 13060173 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-443 2308 chr3R 13066984 13067135 chr3R 13067091 13067231 28 96 1.5 0.5 1.0 14.0 247 chr3R 13066984 intron sim + chr3R 13067108 intron sim + chr3R 13067231 intron sim + chr3R_28_13065001 chr3R_13065001 RAL-443 2309 chr3R 13135811 13135859 chr3R 13138002 13138044 pogo 11 2192 3.5 4.5 4.0 2.2 2233 chr3R 13135811 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138044 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13135001 chr3R_13135001 RAL-443 2310 chr3R 13143030 13143066 chr3R 13148619 13148659 mdg3 8 5587 4.0 7.0 5.5 1.2 5629 chr3R 13143030 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148659 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-443 2311 chr3R 13194074 13194128 chr3R 13194683 13194737 22 607 8.0 3.5 5.8 3.2 663 chr3R 13194074 intergenic not near genes chr3R 13194406 intergenic not near genes chr3R 13194737 intergenic not near genes chr3R_22_13190001 chr3R_13190001 RAL-443 2312 chr3R 13195933 13195982 chr3R 13196048 13196072 9 108 3.0 5.5 4.2 1.7 139 chr3R 13195933 intergenic not near genes chr3R 13196002 intergenic not near genes chr3R 13196072 intergenic not near genes chr3R_9_13195001 chr3R_13195001 RAL-443 2313 chr3R 13391620 13391664 chr3R 13391713 13391762 20 95 7.5 5.0 6.2 2.8 142 chr3R 13391620 intron CCHa2 - chr3R 13391691 intron CCHa2 - chr3R 13391762 intron CCHa2 - chr3R_20_13390001 chr3R_13390001 RAL-443 2314 chr3R 13394673 13394703 chr3R 13395020 13395072 4 362 2.0 2.5 2.2 1.2 399 chr3R 13394673 intron CCHa2 - chr3R 13394872 intron CCHa2 - chr3R 13395072 5` UTR CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-443 2315 chr3R 13400996 13401045 chr3R 13401107 13401155 24 109 5.0 1.0 3.0 6.0 159 chr3R 13400996 intron CG9796 - chr3R 13401076 intron CG9796 - chr3R 13401155 intron CG9796 - chr3R_24_13400001 chr3R_13400001 RAL-443 2316 chr3R 13418647 13418680 chr3R 13418743 13418771 10 95 3.5 6.5 5.0 1.7 124 chr3R 13418647 intergenic not near genes chr3R 13418709 intergenic not near genes chr3R 13418771 intergenic not near genes chr3R_10_13415001 chr3R_13415001 RAL-443 2317 chr3R 13517235 13517257 chr3R 13520037 13520094 jockey 4 2827 5.5 0.0 2.8 1.1 2859 chr3R 13517235 intergenic not near genes chr3R 13518664 intergenic not near genes chr3R 13520094 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-443 2318 chr3R 13525173 13525216 chr3R 13525283 13525338 13 114 1.5 3.0 2.2 4.1 165 chr3R 13525173 intergenic not near genes chr3R 13525256 intergenic not near genes chr3R 13525338 intergenic not near genes chr3R_13_13525001 chr3R_13525001 RAL-443 2319 chr3R 13596023 13596067 chr3R 13596125 13596169 11 98 4.5 5.5 5.0 1.8 146 chr3R 13596023 intergenic not near genes chr3R 13596096 intergenic not near genes chr3R 13596169 intergenic not near genes chr3R_11_13595001 chr3R_13595001 RAL-443 2320 chr3R 13598066 13598115 chr3R 13598164 13598213 13 96 5.5 4.0 4.8 2.2 147 chr3R 13598066 intergenic not near genes chr3R 13598140 intergenic not near genes chr3R 13598213 intergenic not near genes chr3R_13_13595001 chr3R_13595001 RAL-443 2321 chr3R 13659716 13659836 chr3R 13659825 13659945 7 110 0.0 0.0 0.0 7.0 229 chr3R 13659716 intron Hrb87F - chr3R 13659830 intron Hrb87F - chr3R 13659945 intron Hrb87F - chr3R_7_13655001 chr3R_13655001 RAL-443 2322 chr3R 13672922 13672974 chr3R 13673020 13673059 25 93 4.0 7.0 5.5 3.8 137 chr3R 13672922 intron Task6 - chr3R 13672990 intron Task6 - chr3R 13673059 intron Task6 - chr3R_25_13670001 chr3R_13670001 RAL-443 2323 chr3R 13692775 13692815 chr3R 13692863 13692913 11 92 5.0 5.5 5.2 1.8 138 chr3R 13692775 3` UTR flfl + chr3R 13692844 3` UTR flfl + chr3R 13692913 3` UTR flfl + chr3R_11_13690001 chr3R_13690001 RAL-443 2324 chr3R 11988075 11988080 chr3R 13731610 13731615 4 1743535 13.0 32.0 22.5 0.2 1743540 chr3R 11988075 intron mfas - chr3R 12859845 intergenic not near genes chr3R 13731615 intron CG34383 + chr3R_4_12855001 chr3R_12855001 RAL-443 2325 chr3R 13782033 13782075 chr3R 13782134 13782155 10 96 3.5 3.0 3.2 2.4 122 chr3R 13782033 exon CG9286 + chr3R 13782094 intergenic CG9286 +,Dip-B + chr3R 13782155 intergenic CG9286 +,Dip-B + chr3R_10_13780001 chr3R_13780001 RAL-443 2326 chr3R 13850296 13850338 chr3R 13850411 13850446 6 106 0.0 2.0 1.0 3.0 150 chr3R 13850296 intergenic not near genes chr3R 13850371 intergenic not near genes chr3R 13850446 intergenic not near genes chr3R_6_13850001 chr3R_13850001 RAL-443 2327 chr3R 13863661 13863716 chr3R 13863769 13863788 12 97 6.5 1.5 4.0 2.4 127 chr3R 13863661 intergenic not near genes chr3R 13863724 intergenic not near genes chr3R 13863788 intergenic not near genes chr3R_12_13860001 chr3R_13860001 RAL-443 2328 chr3R 13948210 13948258 chr3R 13948308 13948356 16 95 1.5 5.5 3.5 3.6 146 chr3R 13948210 intergenic CG31517 + chr3R 13948283 intergenic CG31517 + chr3R 13948356 intergenic CG31517 + chr3R_16_13945001 chr3R_13945001 RAL-443 2329 chr3R 13975356 13975407 chr3R 13975456 13975507 20 93 3.0 4.5 3.8 4.2 151 chr3R 13975356 intron rdx - chr3R 13975432 intron rdx - chr3R 13975507 intron rdx - chr3R_20_13975001 chr3R_13975001 RAL-443 2330 chr3R 14021626 14021662 chr3R 14023471 14023507 S-element 8 1845 5.0 7.0 6.0 1.1 1881 chr3R 14021626 intron rdx - chr3R 14022566 intron rdx - chr3R 14023507 intron rdx - chr3R_8_14020001 chr3R_14020001 RAL-443 2331 chr3R 14067129 14067155 chr3R 14067228 14067254 12 99 4.5 3.5 4.0 2.4 125 chr3R 14067129 exon foxo + chr3R 14067192 intron foxo + chr3R 14067254 intron foxo + chr3R_12_14065001 chr3R_14065001 RAL-443 2332 chr3R 14071275 14071289 chr3R 14071372 14071386 5 96 7.5 9.0 8.2 0.5 111 chr3R 14071275 intron foxo + chr3R 14071330 intron foxo + chr3R 14071386 intron foxo + chr3R_5_14070001 chr3R_14070001 RAL-443 2333 chr3R 14071291 14071306 chr3R 14071368 14071403 7 90 5.0 8.0 6.5 0.9 112 chr3R 14071291 intron foxo + chr3R 14071347 intron foxo + chr3R 14071403 intron foxo + chr3R_7_14070001 chr3R_14070001 RAL-443 2334 chr3R 7773344 7773344 chr3R 14104440 14104440 5 6331096 19.5 5.5 12.5 0.4 6331096 chr3R 7773344 intergenic not near genes chr3R 10938892 intergenic not near genes chr3R 14104440 intergenic CG12402 - chr3R_5_10935001 chr3R_10935001 RAL-443 2335 chr3R 14109068 14109092 chr3R 14109169 14109177 6 98 4.5 0.5 2.5 1.7 109 chr3R 14109068 intergenic CR44237 -,Or88a + chr3R 14109122 intergenic CR44237 -,Or88a + chr3R 14109177 intergenic CR44237 -,Or88a + chr3R_6_14105001 chr3R_14105001 RAL-443 2336 chr3R 14109093 14109111 chr3R 14109168 14109212 13 97 3.5 0.5 2.0 4.3 119 chr3R 14109093 intergenic CR44237 -,Or88a + chr3R 14109152 intergenic CR44237 -,Or88a + chr3R 14109212 intergenic CR44237 -,Or88a + chr3R_13_14105001 chr3R_14105001 RAL-443 2337 chr3R 14117421 14117467 chr3R 14117514 14117563 20 96 7.5 5.5 6.5 2.7 142 chr3R 14117421 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117563 intron Kif19A - chr3R_20_14115001 chr3R_14115001 RAL-443 2338 chr3R 14132416 14132450 chr3R 14132549 14132583 8 130 0.0 6.5 3.2 1.9 167 chr3R 14132416 intergenic CG14356 - chr3R 14132500 intergenic CG14356 - chr3R 14132583 intergenic not near genes chr3R_8_14130001 chr3R_14130001 RAL-443 2339 chr3R 14144192 14144240 chr3R 14144294 14144341 10 96 4.5 3.0 3.8 2.1 149 chr3R 14144192 intergenic not near genes chr3R 14144266 intergenic not near genes chr3R 14144341 intergenic not near genes chr3R_10_14140001 chr3R_14140001 RAL-443 2340 chr3R 14169741 14169758 chr3R 14169838 14169861 8 101 0.5 3.5 2.0 2.7 120 chr3R 14169741 3` UTR Dop1R1 - chr3R 14169801 3` UTR Dop1R1 - chr3R 14169861 3` UTR Dop1R1 - chr3R_8_14165001 chr3R_14165001 RAL-443 2341 chr3R 14170136 14170174 chr3R 14170246 14170259 9 107 9.0 4.5 6.8 1.2 123 chr3R 14170136 3` UTR Dop1R1 - chr3R 14170198 3` UTR Dop1R1 - chr3R 14170259 3` UTR Dop1R1 - chr3R_9_14170001 chr3R_14170001 RAL-443 2342 chr3R 14180790 14180840 chr3R 14185575 14185593 F-element 24 4777 7.5 0.0 3.8 5.0 4803 chr3R 14180790 intron Dop1R1 - chr3R 14183192 intron Dop1R1 - chr3R 14185593 intron Dop1R1 - chr3R_24_14180001 chr3R_14180001 RAL-443 2343 chr3R 14194440 14194461 chr3R 14203594 14203615 roo 12 9154 5.0 1.5 3.2 2.9 9175 chr3R 14194440 intron Dop1R1 - chr3R 14199028 intron Dop1R1 - chr3R 14203615 intron Dop1R1 - chr3R_12_14195001 chr3R_14195001 RAL-443 2344 chr3R 14236918 14236931 chr3R 14244436 14244451 Idefix 4 7518 2.5 4.0 3.2 1.0 7533 chr3R 14236918 exon CG43291 - chr3R 14240684 intron CG43291 - chr3R 14244451 intron CG43291 - chr3R_4_14240001 chr3R_14240001 RAL-443 2345 chr3R 14246383 14246412 chr3R 14247898 14247928 jockey 9 1508 6.0 7.0 6.5 1.2 1545 chr3R 14246383 intergenic not near genes chr3R 14247156 intergenic not near genes chr3R 14247928 intergenic not near genes chr3R_9_14245001 chr3R_14245001 RAL-443 2346 chr3R 14253684 14253720 chr3R 14253783 14253819 22 98 4.0 7.5 5.8 3.2 135 chr3R 14253684 intron Aats-met - chr3R 14253752 intron Aats-met - chr3R 14253819 intron Aats-met - chr3R_22_14250001 chr3R_14250001 RAL-443 2347 chr3R 14308817 14308836 chr3R 14308989 14309008 5 171 5.5 2.0 3.8 1.0 191 chr3R 14308817 intergenic su(Hw) -,RpII15 + chr3R 14308912 intergenic RpII15 +,su(Hw) - chr3R 14309008 intergenic RpII15 +,su(Hw) - chr3R_5_14305001 chr3R_14305001 RAL-443 2348 chr3R 14389361 14389401 chr3R 14389524 14389551 11 160 1.5 0.5 1.0 5.5 190 chr3R 14389361 intergenic not near genes chr3R 14389456 intergenic not near genes chr3R 14389551 intergenic not near genes chr3R_11_14385001 chr3R_14385001 RAL-443 2349 chr3R 14514460 14514511 chr3R 14514565 14514600 19 101 6.5 6.5 6.5 2.5 140 chr3R 14514460 3` UTR Pde6 - chr3R 14514530 3` UTR Pde6 - chr3R 14514600 3` UTR Pde6 - chr3R_19_14510001 chr3R_14510001 RAL-443 2350 chr3R 14533582 14533590 chr3R 14533690 14533698 4 108 0.0 7.5 3.8 0.8 116 chr3R 14533582 intron Pde6 - chr3R 14533640 intron Pde6 - chr3R 14533698 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-443 2351 chr3R 14560877 14560927 chr3R 14560991 14561026 11 110 7.0 0.5 3.8 2.3 149 chr3R 14560877 intergenic CG14850 + chr3R 14560952 5` UTR CG14850 + chr3R 14561026 exon CG14850 + chr3R_11_14560001 chr3R_14560001 RAL-443 2352 chr3R 14577937 14577973 chr3R 14578073 14578104 17 135 10.5 5.0 7.8 1.9 167 chr3R 14577937 intron stumps + chr3R 14578020 intron stumps + chr3R 14578104 intron stumps + chr3R_17_14575001 chr3R_14575001 RAL-443 2353 chr3R 14589044 14589071 chr3R 14589155 14589189 9 116 3.5 5.5 4.5 1.6 145 chr3R 14589044 intron stumps + chr3R 14589116 intron stumps + chr3R 14589189 intron stumps + chr3R_9_14585001 chr3R_14585001 RAL-443 2354 chr3R 14608451 14608477 chr3R 14608563 14608589 7 112 1.5 7.0 4.2 1.3 138 chr3R 14608451 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608589 intergenic not near genes chr3R_7_14605001 chr3R_14605001 RAL-443 2355 chr3R 14631237 14631284 chr3R 14631330 14631382 18 95 7.0 6.5 6.8 2.3 145 chr3R 14631237 intron,intron CG7886 -,Cad88C + chr3R 14631310 intron,intron CG7886 -,Cad88C + chr3R 14631382 intron,intron CG7886 -,Cad88C + chr3R_18_14630001 chr3R_14630001 RAL-443 2356 chr3R 14662296 14662339 chr3R 14662397 14662440 13 100 2.5 5.5 4.0 2.6 144 chr3R 14662296 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662440 exon Rad17 - chr3R_13_14660001 chr3R_14660001 RAL-443 2357 chr3R 14686211 14686261 chr3R 14686610 14686661 10 397 3.0 4.0 3.5 2.2 450 chr3R 14686211 intron Meltrin - chr3R 14686436 intron Meltrin - chr3R 14686661 intron Meltrin - chr3R_10_14685001 chr3R_14685001 RAL-443 2358 chr3R 14704369 14704414 chr3R 14704466 14704509 14 92 6.5 4.0 5.2 2.3 140 chr3R 14704369 intron kibra - chr3R 14704439 intron kibra - chr3R 14704509 intron kibra - chr3R_14_14700001 chr3R_14700001 RAL-443 2359 chr3R 14709709 14709722 chr3R 14709810 14709848 4 114 3.0 2.5 2.8 1.1 139 chr3R 14709709 intron kibra - chr3R 14709778 intron kibra - chr3R 14709848 intron kibra - chr3R_4_14705001 chr3R_14705001 RAL-443 2360 chr3R 14804759 14804793 chr3R 14804872 14804902 16 111 8.0 7.5 7.8 1.8 143 chr3R 14804759 3` UTR btsz - chr3R 14804830 3` UTR btsz - chr3R 14804902 3` UTR btsz - chr3R_16_14800001 chr3R_14800001 RAL-443 2361 chr3R 14839824 14839840 chr3R 14840702 14840726 4 883 3.0 7.5 5.2 0.6 902 chr3R 14839824 intron btsz - chr3R 14840275 intron btsz - chr3R 14840726 intron btsz - chr3R_4_14840001 chr3R_14840001 RAL-443 2362 chr3R 14839841 14839847 chr3R 14840700 14840733 4 878 1.5 7.0 4.2 0.8 892 chr3R 14839841 intron btsz - chr3R 14840287 intron btsz - chr3R 14840733 intron btsz - chr3R_4_14840001 chr3R_14840001 RAL-443 2363 chr3R 14955134 14955180 chr3R 14955244 14955290 12 109 2.0 6.0 4.0 2.4 156 chr3R 14955134 intergenic not near genes chr3R 14955212 intergenic not near genes chr3R 14955290 intergenic not near genes chr3R_12_14955001 chr3R_14955001 RAL-443 2364 chr3R 15009134 15009164 chr3R 15009240 15009241 5 102 0.0 4.0 2.0 1.7 107 chr3R 15009134 intergenic not near genes chr3R 15009188 intergenic not near genes chr3R 15009241 intergenic not near genes chr3R_5_15005001 chr3R_15005001 RAL-443 2365 chr3R 15017442 15017476 chr3R 15017538 15017562 11 90 8.0 3.0 5.5 1.7 120 chr3R 15017442 intergenic not near genes chr3R 15017502 intergenic not near genes chr3R 15017562 intergenic not near genes chr3R_11_15015001 chr3R_15015001 RAL-443 2366 chr3R 15017478 15017487 chr3R 15017575 15017584 4 97 6.5 8.5 7.5 0.5 106 chr3R 15017478 intergenic not near genes chr3R 15017531 intergenic not near genes chr3R 15017584 intergenic not near genes chr3R_4_15015001 chr3R_15015001 RAL-443 2367 chr3R 15026313 15026345 chr3R 15026419 15026451 7 105 3.0 3.5 3.2 1.7 138 chr3R 15026313 intergenic not near genes chr3R 15026382 intergenic not near genes chr3R 15026451 intergenic not near genes chr3R_7_15025001 chr3R_15025001 RAL-443 2368 chr3R 15041406 15041456 chr3R 15045194 15045244 Doc 23 3787 7.5 5.0 6.2 3.2 3838 chr3R 15041406 intergenic not near genes chr3R 15043325 intergenic not near genes chr3R 15045244 intergenic not near genes chr3R_23_15040001 chr3R_15040001 RAL-443 2369 chr3R 15058200 15058245 chr3R 15058305 15058349 17 101 3.0 3.0 3.0 4.2 149 chr3R 15058200 intron dpr9 - chr3R 15058274 intron dpr9 - chr3R 15058349 intron dpr9 - chr3R_17_15055001 chr3R_15055001 RAL-443 2370 chr3R 15079788 15079803 chr3R 15080049 15080049 pogo 9 258 12.0 4.0 8.0 1.0 261 chr3R 15079788 3` UTR CG6966 - chr3R 15079918 3` UTR CG6966 - chr3R 15080049 3` UTR CG6966 - chr3R_9_15075001 chr3R_15075001 RAL-443 2371 chr3R 15079804 15079839 chr3R 15080048 15080100 pogo 14 257 3.5 4.0 3.8 2.9 296 chr3R 15079804 3` UTR CG6966 - chr3R 15079952 3` UTR CG6966 - chr3R 15080100 3` UTR CG6966 - chr3R_14_15075001 chr3R_15075001 RAL-443 2372 chr3R 15102492 15102531 chr3R 15109770 15109805 412 9 7276 3.5 4.5 4.0 1.8 7313 chr3R 15102492 intron CG42788 - chr3R 15106148 intron CG42788 - chr3R 15109805 intron CG42788 - chr3R_9_15105001 chr3R_15105001 RAL-443 2373 chr3R 15114897 15114939 chr3R 15114994 15115016 11 94 4.5 7.5 6.0 1.6 119 chr3R 15114897 intron CG42788 - chr3R 15114956 intron CG42788 - chr3R 15115016 intron CG42788 - chr3R_11_15110001 chr3R_15110001 RAL-443 2374 chr3R 15160553 15160591 chr3R 15160671 15160709 8 118 6.5 9.0 7.8 0.9 156 chr3R 15160553 intron Gyc88E + chr3R 15160631 intron Gyc88E + chr3R 15160709 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-443 2375 chr3R 15190632 15190683 chr3R 15190777 15190823 26 142 5.5 8.0 6.8 3.3 191 chr3R 15190632 3` UTR Gyc88E + chr3R 15190728 3` UTR Gyc88E + chr3R 15190823 3` UTR Gyc88E + chr3R_26_15190001 chr3R_15190001 RAL-443 2376 chr3R 15406125 15406156 chr3R 15406226 15406252 11 98 33.5 26.5 30.0 0.4 127 chr3R 15406125 intron CG6125 - chr3R 15406188 intron CG6125 - chr3R 15406252 intron CG6125 - chr3R_11_15405001 chr3R_15405001 RAL-443 2377 chr3R 15401207 15401264 chr3R 15407849 15407906 12 6646 41.5 38.5 40.0 0.3 6699 chr3R 15401207 3` UTR Rbp + chr3R 15404556 intron CG6125 - chr3R 15407906 intergenic not near genes chr3R_12_15400001 chr3R_15400001 RAL-443 2378 chr3R 15416240 15416282 chr3R 15416340 15416347 10 96 3.5 8.5 6.0 1.4 107 chr3R 15416240 3` UTR Atx2 + chr3R 15416294 3` UTR Atx2 + chr3R 15416347 3` UTR Atx2 + chr3R_10_15415001 chr3R_15415001 RAL-443 2379 chr3R 15445894 15445905 chr3R 15445998 15446009 5 105 3.5 0.0 1.8 1.8 115 chr3R 15445894 exon AdamTS-A - chr3R 15445952 intron AdamTS-A - chr3R 15446009 intron AdamTS-A - chr3R_5_15445001 chr3R_15445001 RAL-443 2380 chr3R 15517588 15517631 chr3R 15517690 15517705 5 91 1.0 2.0 1.5 2.0 117 chr3R 15517588 intergenic not near genes chr3R 15517646 intergenic not near genes chr3R 15517705 intergenic not near genes chr3R_5_15515001 chr3R_15515001 RAL-443 2381 chr3R 15592871 15592883 chr3R 15592975 15592987 5 104 15.5 6.5 11.0 0.4 116 chr3R 15592871 intergenic not near genes chr3R 15592929 intergenic not near genes chr3R 15592987 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-443 2382 chr3R 15592885 15592923 chr3R 15592974 15593014 13 101 5.0 6.5 5.8 1.9 129 chr3R 15592885 intergenic not near genes chr3R 15592950 intergenic not near genes chr3R 15593014 intergenic not near genes chr3R_13_15590001 chr3R_15590001 RAL-443 2383 chr3R 15594657 15594667 chr3R 15594760 15594770 7 103 0.0 11.0 5.5 1.1 113 chr3R 15594657 intergenic not near genes chr3R 15594714 intergenic not near genes chr3R 15594770 intergenic not near genes chr3R_7_15590001 chr3R_15590001 RAL-443 2384 chr3R 15601159 15601186 chr3R 15608688 15608728 412 7 7535 10.0 8.5 9.2 0.7 7569 chr3R 15601159 intergenic not near genes chr3R 15604944 intergenic not near genes chr3R 15608728 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-443 2385 chr3R 15646777 15646800 chr3R 15646880 15646903 17 102 3.5 5.5 4.5 3.1 126 chr3R 15646777 intergenic not near genes chr3R 15646840 intergenic not near genes chr3R 15646903 intergenic not near genes chr3R_17_15645001 chr3R_15645001 RAL-443 2386 chr3R 15734161 15734198 chr3R 15734262 15734289 8 104 4.5 7.0 5.8 1.2 128 chr3R 15734161 intergenic not near genes chr3R 15734225 intergenic not near genes chr3R 15734289 intergenic not near genes chr3R_8_15730001 chr3R_15730001 RAL-443 2387 chr3R 15773925 15773945 chr3R 15775217 15775227 4 1292 7.5 42.5 25.0 0.2 1302 chr3R 15773925 intergenic CR45206 -,CG4525 + chr3R 15774576 3` UTR,exon CR45206 -,CG4525 + chr3R 15775227 intron,3` UTR CG4525 +,CR45207 - chr3R_4_15770001 chr3R_15770001 RAL-443 2388 chr3R 15779633 15779677 chr3R 15779734 15779778 17 100 3.5 7.0 5.2 2.7 145 chr3R 15779633 intergenic CG5614 + chr3R 15779706 intergenic CG5614 + chr3R 15779778 intergenic CG5614 + chr3R_17_15775001 chr3R_15775001 RAL-443 2389 chr3R 15878081 15878102 chr3R 15878189 15878210 8 106 5.5 6.0 5.8 1.2 129 chr3R 15878081 intergenic not near genes chr3R 15878146 intergenic not near genes chr3R 15878210 intergenic not near genes chr3R_8_15875001 chr3R_15875001 RAL-443 2390 chr3R 15891644 15891671 chr3R 15892056 15892059 9 406 11.0 6.5 8.8 0.9 415 chr3R 15891644 intron CG14877 - chr3R 15891852 intron CG14877 - chr3R 15892059 intron CG14877 - chr3R_9_15890001 chr3R_15890001 RAL-443 2391 chr3R 15975019 15975058 chr3R 15975488 15975517 8 462 33.5 42.5 38.0 0.2 498 chr3R 15975019 intron Hel89B + chr3R 15975268 intron Hel89B + chr3R 15975517 intron Hel89B + chr3R_8_15975001 chr3R_15975001 RAL-443 2392 chr3R 16023848 16023885 chr3R 16023945 16023982 8 95 3.0 1.5 2.2 2.5 134 chr3R 16023848 intergenic not near genes chr3R 16023915 intergenic not near genes chr3R 16023982 intergenic not near genes chr3R_8_16020001 chr3R_16020001 RAL-443 2393 chr3R 16192681 16192721 chr3R 16192781 16192802 5 89 2.0 1.5 1.8 1.8 121 chr3R 16192681 intron sra + chr3R 16192742 intron sra + chr3R 16192802 intron sra + chr3R_5_16190001 chr3R_16190001 RAL-443 2394 chr3R 16246538 16246555 chr3R 16246599 16246651 4 85 0.0 6.5 3.2 1.0 113 chr3R 16246538 intron tara + chr3R 16246594 intron tara + chr3R 16246651 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-443 2395 chr3R 16253515 16253566 chr3R 16253621 16253671 6 104 0.0 4.0 2.0 2.0 156 chr3R 16253515 intron tara + chr3R 16253593 intron tara + chr3R 16253671 intron tara + chr3R_6_16250001 chr3R_16250001 RAL-443 2396 chr3R 16255678 16255707 chr3R 16255779 16255808 14 99 5.0 0.0 2.5 4.0 130 chr3R 16255678 intron tara + chr3R 16255743 intron tara + chr3R 16255808 intron tara + chr3R_14_16255001 chr3R_16255001 RAL-443 2397 chr3R 16374280 16374327 chr3R 16374417 16374425 9 131 3.5 5.0 4.2 1.7 145 chr3R 16374280 intergenic ss - chr3R 16374352 intergenic ss - chr3R 16374425 intergenic ss - chr3R_9_16370001 chr3R_16370001 RAL-443 2398 chr3R 16472591 16472673 chr3R 16472654 16472745 8 77 1.0 5.0 3.0 2.0 154 chr3R 16472591 intergenic Gyc-89Da + chr3R 16472668 5` UTR Gyc-89Da + chr3R 16472745 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-443 2399 chr3R 16519922 16519932 chr3R 16520024 16520045 4 108 5.0 3.0 4.0 0.8 123 chr3R 16519922 intron CG42342 + chr3R 16519984 intron CG42342 + chr3R 16520045 intron CG42342 + chr3R_4_16515001 chr3R_16515001 RAL-443 2400 chr3R 16534436 16534454 chr3R 16534544 16534560 8 108 6.0 3.5 4.8 1.4 124 chr3R 16534436 intron CG42342 + chr3R 16534498 intron CG42342 + chr3R 16534560 intron CG42342 + chr3R_8_16530001 chr3R_16530001 RAL-443 2401 chr3R 16582907 16582914 chr3R 16583000 16583013 4 96 4.5 6.0 5.2 0.6 106 chr3R 16582907 intron Scp2 - chr3R 16582960 intron Scp2 - chr3R 16583013 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-443 2402 chr3R 16714594 16714637 chr3R 16715010 16715058 13 418 3.5 3.0 3.2 3.1 464 chr3R 16714594 intron Ubx - chr3R 16714826 intron Ubx - chr3R 16715058 intron Ubx - chr3R_13_16710001 chr3R_16710001 RAL-443 2403 chr3R 16771594 16771644 chr3R 16771690 16771740 14 88 2.5 3.0 2.8 3.7 146 chr3R 16771594 intron bxd - chr3R 16771667 intron bxd - chr3R 16771740 intron bxd - chr3R_14_16770001 chr3R_16770001 RAL-443 2404 chr3R 16856592 16856615 chr3R 16856721 16856737 7 126 7.5 0.5 4.0 1.4 145 chr3R 16856592 intron iab-8 - chr3R 16856664 intron iab-8 - chr3R 16856737 intron iab-8 - chr3R_7_16855001 chr3R_16855001 RAL-443 2405 chr3R 16860330 16860362 chr3R 16860413 16860460 9 95 2.5 0.0 1.2 4.1 130 chr3R 16860330 intron iab-8 - chr3R 16860395 intron iab-8 - chr3R 16860460 intron iab-8 - chr3R_9_16860001 chr3R_16860001 RAL-443 2406 chr3R 16921812 16921861 chr3R 16921916 16921952 16 99 3.0 3.0 3.0 4.0 140 chr3R 16921812 intron iab-8 - chr3R 16921882 intron iab-8 - chr3R 16921952 intron iab-8 - chr3R_16_16920001 chr3R_16920001 RAL-443 2407 chr3R 17212968 17213000 chr3R 17213101 17213133 13 132 4.0 7.5 5.8 1.9 165 chr3R 17212968 intergenic not near genes chr3R 17213050 intergenic not near genes chr3R 17213133 intergenic not near genes chr3R_13_17210001 chr3R_17210001 RAL-443 2408 chr3R 17234081 17234117 chr3R 17234166 17234218 14 98 2.5 4.0 3.2 3.3 137 chr3R 17234081 intron beat-IIb - chr3R 17234150 intron beat-IIb - chr3R 17234218 intron beat-IIb - chr3R_14_17230001 chr3R_17230001 RAL-443 2409 chr3R 17335140 17335163 chr3R 17335236 17335259 4 95 4.0 6.0 5.0 0.7 119 chr3R 17335140 intron beat-IIa - chr3R 17335200 intron beat-IIa - chr3R 17335259 intron beat-IIa - chr3R_4_17335001 chr3R_17335001 RAL-443 2410 chr3R 17369432 17369448 chr3R 17369659 17369659 4 220 1.0 0.0 0.5 2.7 227 chr3R 17369432 intergenic not near genes chr3R 17369546 intergenic not near genes chr3R 17369659 intergenic not near genes chr3R_4_17365001 chr3R_17365001 RAL-443 2411 chr3R 17406984 17407024 chr3R 17407106 17407145 16 121 7.5 4.5 6.0 2.3 161 chr3R 17406984 intron CG42798 + chr3R 17407064 5` UTR CG42798 + chr3R 17407145 exon CG42798 + chr3R_16_17405001 chr3R_17405001 RAL-443 2412 chr3R 17461181 17461231 chr3R 17461283 17461317 20 96 4.5 4.0 4.2 3.8 136 chr3R 17461181 intergenic not near genes chr3R 17461249 intergenic not near genes chr3R 17461317 intergenic not near genes chr3R_20_17460001 chr3R_17460001 RAL-443 2413 chr3R 17521576 17521589 chr3R 17521716 17521766 5 161 0.5 2.5 1.5 2.0 190 chr3R 17521576 intergenic not near genes chr3R 17521671 intergenic not near genes chr3R 17521766 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-443 2414 chr3R 17522193 17522246 chr3R 17522305 17522309 7 98 2.0 0.5 1.2 3.2 116 chr3R 17522193 intergenic not near genes chr3R 17522251 intergenic not near genes chr3R 17522309 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-443 2415 chr3R 17524921 17524930 chr3R 17524991 17525030 5 92 0.0 6.5 3.2 1.2 109 chr3R 17524921 intergenic not near genes chr3R 17524976 intergenic not near genes chr3R 17525030 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-443 2416 chr3R 17638301 17638312 chr3R 17638807 17638818 roo 7 506 16.0 8.5 12.2 0.5 517 chr3R 17638301 intron CG43175 + chr3R 17638560 intron CG43175 + chr3R 17638818 intron,intron CG43175 +,CR45222 + chr3R_7_17635001 chr3R_17635001 RAL-443 2417 chr3R 17638314 17638349 chr3R 17638805 17638830 roo 24 503 7.5 8.0 7.8 2.7 516 chr3R 17638314 intron CG43175 + chr3R 17638572 intron CG43175 + chr3R 17638830 intron,intron CG43175 +,CR45222 + chr3R_24_17635001 chr3R_17635001 RAL-443 2418 chr3R 17645683 17645721 chr3R 17645833 17645871 9 148 1.5 4.0 2.8 2.4 188 chr3R 17645683 intergenic CG43175 + chr3R 17645777 intergenic not near genes chr3R 17645871 intergenic not near genes chr3R_9_17645001 chr3R_17645001 RAL-443 2419 chr3R 17653069 17653109 chr3R 17653179 17653198 6 103 8.5 6.0 7.2 0.7 129 chr3R 17653069 intron,intron CG14322 +,CR45223 - chr3R 17653134 intron,intron CG14322 +,CR45223 - chr3R 17653198 intron,intron CG14322 +,CR45223 - chr3R_6_17650001 chr3R_17650001 RAL-443 2420 chr3R 17657651 17657656 chr3R 17657806 17657827 INE-1 4 165 0.0 7.0 3.5 0.9 176 chr3R 17657651 intron CG14322 + chr3R 17657739 intron CG14322 + chr3R 17657827 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-443 2421 chr3R 17657657 17657661 chr3R 17657803 17657832 INE-1 5 162 0.0 6.5 3.2 1.2 175 chr3R 17657657 intron CG14322 + chr3R 17657744 intron CG14322 + chr3R 17657832 intron CG14322 + chr3R_5_17655001 chr3R_17655001 RAL-443 2422 chr3R 17734824 17734859 chr3R 17734958 17734993 7 133 10.0 2.5 6.2 1.0 169 chr3R 17734824 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17734993 intergenic not near genes chr3R_7_17730001 chr3R_17730001 RAL-443 2423 chr3R 17743205 17743226 chr3R 17743301 17743327 9 100 5.0 2.0 3.5 2.0 122 chr3R 17743205 intron TyrRII + chr3R 17743266 intron TyrRII + chr3R 17743327 intron TyrRII + chr3R_9_17740001 chr3R_17740001 RAL-443 2424 chr3R 17773375 17773393 chr3R 17773475 17773493 10 100 2.5 3.5 3.0 2.5 118 chr3R 17773375 intron CG43102 - chr3R 17773434 intron CG43102 - chr3R 17773493 exon CG43102 - chr3R_10_17770001 chr3R_17770001 RAL-443 2425 chr3R 17811178 17811204 chr3R 17811278 17811304 6 100 7.5 0.0 3.8 1.2 126 chr3R 17811178 intergenic CG18012 -,tinc + chr3R 17811241 intergenic CG18012 -,tinc + chr3R 17811304 intergenic CG18012 -,tinc + chr3R_6_17810001 chr3R_17810001 RAL-443 2426 chr3R 17823188 17823227 chr3R 17823293 17823299 17 101 9.0 6.0 7.5 2.0 111 chr3R 17823188 intron tinc + chr3R 17823244 intron tinc + chr3R 17823299 intron tinc + chr3R_17_17820001 chr3R_17820001 RAL-443 2427 chr3R 17840338 17840356 chr3R 17840450 17840468 6 111 16.5 3.5 10.0 0.5 130 chr3R 17840338 intron tinc + chr3R 17840403 intron tinc + chr3R 17840468 intron tinc + chr3R_6_17840001 chr3R_17840001 RAL-443 2428 chr3R 17842068 17842087 chr3R 17842387 17842414 5 317 5.0 6.0 5.5 0.8 346 chr3R 17842068 intron tinc + chr3R 17842241 intron tinc + chr3R 17842414 intron tinc + chr3R_5_17840001 chr3R_17840001 RAL-443 2429 chr3R 17842088 17842097 chr3R 17842373 17842421 9 311 3.5 4.0 3.8 1.9 333 chr3R 17842088 intron tinc + chr3R 17842254 intron tinc + chr3R 17842421 intron tinc + chr3R_9_17840001 chr3R_17840001 RAL-443 2430 chr3R 17845098 17845215 chr3R 17845206 17845289 7 86 2.0 3.5 2.8 1.8 191 chr3R 17845098 intron tinc + chr3R 17845194 intron tinc + chr3R 17845289 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-443 2431 chr3R 17895322 17895372 chr3R 17895431 17895483 14 111 6.0 1.0 3.5 3.1 161 chr3R 17895322 intron Rim - chr3R 17895402 intron Rim - chr3R 17895483 intron Rim - chr3R_14_17895001 chr3R_17895001 RAL-443 2432 chr3R 17899069 17899088 chr3R 17899167 17899186 11 98 9.5 4.5 7.0 1.4 117 chr3R 17899069 intron Rim - chr3R 17899128 intron Rim - chr3R 17899186 intron Rim - chr3R_11_17895001 chr3R_17895001 RAL-443 2433 chr3R 17913102 17913147 chr3R 17913217 17913262 7 115 0.0 3.5 1.8 2.5 160 chr3R 17913102 intron Rim - chr3R 17913182 intron Rim - chr3R 17913262 intron Rim - chr3R_7_17910001 chr3R_17910001 RAL-443 2434 chr3R 17925843 17925877 chr3R 17927330 17927364 hobo 4 1486 5.0 9.5 7.2 0.5 1521 chr3R 17925843 intron cpo + chr3R 17926604 intron cpo + chr3R 17927364 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-443 2435 chr3R 18003022 18003039 chr3R 18003138 18003138 4 111 9.0 2.5 5.8 0.6 116 chr3R 18003022 intron cpo + chr3R 18003080 intron cpo + chr3R 18003138 intron cpo + chr3R_4_18000001 chr3R_18000001 RAL-443 2436 chr3R 18025325 18025363 chr3R 18025426 18025464 14 99 2.0 4.0 3.0 3.5 139 chr3R 18025325 3` UTR CG7794 + chr3R 18025394 intergenic CG7794 + chr3R 18025464 intergenic CG7794 + chr3R_14_18025001 chr3R_18025001 RAL-443 2437 chr3R 18032774 18032809 chr3R 18040467 18040502 opus 4 7693 4.5 7.0 5.8 0.6 7728 chr3R 18032774 intergenic not near genes chr3R 18036638 intergenic not near genes chr3R 18040502 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-443 2438 chr3R 18061569 18061577 chr3R 18063157 18063165 F-element 4 1588 13.0 7.5 10.2 0.4 1596 chr3R 18061569 intergenic not near genes chr3R 18062367 intergenic not near genes chr3R 18063165 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-443 2439 chr3R 18061578 18061612 chr3R 18063156 18063156 F-element 16 1584 5.5 7.5 6.5 2.1 1578 chr3R 18061578 intergenic not near genes chr3R 18062367 intergenic not near genes chr3R 18063156 intergenic not near genes chr3R_16_18060001 chr3R_18060001 RAL-443 2440 chr3R 18112352 18112392 chr3R 18112455 18112495 27 102 5.0 1.5 3.2 6.4 143 chr3R 18112352 intron sr + chr3R 18112424 intron sr + chr3R 18112495 intron sr + chr3R_27_18110001 chr3R_18110001 RAL-443 2441 chr3R 18126188 18126228 chr3R 18126287 18126327 9 99 6.0 5.0 5.5 1.4 139 chr3R 18126188 intron sr + chr3R 18126258 intron sr + chr3R 18126327 intron sr + chr3R_9_18125001 chr3R_18125001 RAL-443 2442 chr3R 18143558 18143587 chr3R 18143667 18143696 14 109 2.0 10.0 6.0 2.0 138 chr3R 18143558 intergenic not near genes chr3R 18143627 intergenic not near genes chr3R 18143696 intergenic not near genes chr3R_14_18140001 chr3R_18140001 RAL-443 2443 chr3R 18157609 18157617 chr3R 18157736 18157745 6 128 0.0 9.0 4.5 1.1 136 chr3R 18157609 intergenic CR45103 + chr3R 18157677 intergenic CR45103 + chr3R 18157745 5` UTR CR45103 + chr3R_6_18155001 chr3R_18155001 RAL-443 2444 chr3R 18215747 18215769 chr3R 18215930 18215947 7 187 2.5 3.5 3.0 1.8 200 chr3R 18215747 intergenic CG14314 + chr3R 18215847 intergenic CG14314 + chr3R 18215947 intergenic CG14314 + chr3R_7_18215001 chr3R_18215001 RAL-443 2445 chr3R 18232793 18232810 chr3R 18232892 18232909 9 99 5.0 6.0 5.5 1.4 116 chr3R 18232793 intergenic not near genes chr3R 18232851 intergenic not near genes chr3R 18232909 intergenic not near genes chr3R_9_18230001 chr3R_18230001 RAL-443 2446 chr3R 18237544 18237600 chr3R 18237655 18237711 18 107 2.5 3.5 3.0 4.5 167 chr3R 18237544 intron repo + chr3R 18237628 intron repo + chr3R 18237711 intron repo + chr3R_18_18235001 chr3R_18235001 RAL-443 2447 chr3R 18268971 18269025 chr3R 18269126 18269175 29 154 3.0 9.0 6.0 4.1 204 chr3R 18268971 intron CG18599 + chr3R 18269073 intron CG18599 + chr3R 18269175 intron CG18599 + chr3R_29_18265001 chr3R_18265001 RAL-443 2448 chr3R 18319034 18319086 chr3R 18319249 18319282 17 209 2.5 3.0 2.8 4.5 248 chr3R 18319034 intron CG31235 - chr3R 18319158 intron CG31235 - chr3R 18319282 intron CG31235 - chr3R_17_18315001 chr3R_18315001 RAL-443 2449 chr3R 18338988 18338995 chr3R 18339102 18339119 5 121 0.0 4.0 2.0 1.7 131 chr3R 18338988 intron CG15803 - chr3R 18339054 intron CG15803 - chr3R 18339119 intron CG15803 - chr3R_5_18335001 chr3R_18335001 RAL-443 2450 chr3R 18339000 18339023 chr3R 18339099 18339147 9 121 0.0 3.0 1.5 3.6 147 chr3R 18339000 intron CG15803 - chr3R 18339074 intron CG15803 - chr3R 18339147 intron CG15803 - chr3R_9_18335001 chr3R_18335001 RAL-443 2451 chr3R 18472270 18472287 chr3R 18472390 18472408 4 120 5.0 6.5 5.8 0.6 138 chr3R 18472270 intron fru - chr3R 18472339 intron fru - chr3R 18472408 intron fru - chr3R_4_18470001 chr3R_18470001 RAL-443 2452 chr3R 18473235 18473248 chr3R 18473337 18473355 8 106 0.0 0.5 0.2 6.7 120 chr3R 18473235 intron fru - chr3R 18473295 intron fru - chr3R 18473355 intron fru - chr3R_8_18470001 chr3R_18470001 RAL-443 2453 chr3R 18481017 18481063 chr3R 18481134 18481175 16 112 4.5 7.0 5.8 2.4 158 chr3R 18481017 intron fru - chr3R 18481096 intron fru - chr3R 18481175 intron fru - chr3R_16_18480001 chr3R_18480001 RAL-443 2454 chr3R 18481064 18481068 chr3R 18481131 18481140 4 93 3.0 6.5 4.8 0.7 76 chr3R 18481064 intron fru - chr3R 18481102 intron fru - chr3R 18481140 intron fru - chr3R_4_18480001 chr3R_18480001 RAL-443 2455 chr3R 18501583 18501627 chr3R 18501679 18501698 19 98 8.0 8.5 8.2 2.1 115 chr3R 18501583 intron fru - chr3R 18501640 intron fru - chr3R 18501698 intron fru - chr3R_19_18500001 chr3R_18500001 RAL-443 2456 chr3R 18567585 18567602 chr3R 18567697 18567714 7 111 4.5 7.5 6.0 1.0 129 chr3R 18567585 intergenic not near genes chr3R 18567650 intergenic not near genes chr3R 18567714 intergenic not near genes chr3R_7_18565001 chr3R_18565001 RAL-443 2457 chr3R 18606483 18606527 chr3R 18610735 18610779 F-element 15 4248 4.5 9.0 6.8 1.9 4296 chr3R 18606483 intron,intron qin +,CG14304 - chr3R 18608631 intron,intron qin +,CG14304 - chr3R 18610779 intron,intron qin +,CG14304 - chr3R_15_18605001 chr3R_18605001 RAL-443 2458 chr3R 18617696 18617746 chr3R 18617791 18617846 16 96 3.5 4.5 4.0 3.2 150 chr3R 18617696 intron,intron qin +,CG14304 - chr3R 18617771 intron,intron qin +,CG14304 - chr3R 18617846 intron,intron qin +,CG14304 - chr3R_16_18615001 chr3R_18615001 RAL-443 2459 chr3R 18626648 18626685 chr3R 18626734 18626785 13 93 4.5 2.5 3.5 2.9 137 chr3R 18626648 intron qin + chr3R 18626716 intron qin + chr3R 18626785 intron qin + chr3R_13_18625001 chr3R_18625001 RAL-443 2460 chr3R 18649931 18649940 chr3R 18650032 18650041 8 101 8.0 7.5 7.8 0.9 110 chr3R 18649931 3` UTR qin + chr3R 18649986 3` UTR qin + chr3R 18650041 3` UTR qin + chr3R_8_18645001 chr3R_18645001 RAL-443 2461 chr3R 18649944 18649946 chr3R 18650020 18650047 5 91 5.5 5.0 5.2 0.8 103 chr3R 18649944 3` UTR qin + chr3R 18649996 3` UTR qin + chr3R 18650047 3` UTR qin + chr3R_5_18645001 chr3R_18645001 RAL-443 2462 chr3R 18670367 18670414 chr3R 18670479 18670527 16 111 5.0 8.0 6.5 2.1 160 chr3R 18670367 intron CG7702 + chr3R 18670447 intron CG7702 + chr3R 18670527 intron CG7702 + chr3R_16_18670001 chr3R_18670001 RAL-443 2463 chr3R 18695748 18695758 chr3R 18695852 18695855 5 103 9.0 0.0 4.5 0.9 107 chr3R 18695748 3` UTR CG34282 + chr3R 18695802 intergenic CG34282 + chr3R 18695855 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-443 2464 chr3R 18730011 18730034 chr3R 18730105 18730130 4 92 2.5 2.5 2.5 1.1 119 chr3R 18730011 exon Cha + chr3R 18730070 intron Cha + chr3R 18730130 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-443 2465 chr3R 18766755 18766810 chr3R 18766853 18766858 27 94 2.5 3.0 2.8 7.1 103 chr3R 18766755 intron CG7720 - chr3R 18766806 intron CG7720 - chr3R 18766858 intron CG7720 - chr3R_27_18765001 chr3R_18765001 RAL-443 2466 chr3R 18781677 18781724 chr3R 18781768 18781820 6 92 5.0 2.5 3.8 1.2 143 chr3R 18781677 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781820 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-443 2467 chr3R 18792811 18792832 chr3R 18792900 18792935 4 99 5.5 0.0 2.8 1.1 124 chr3R 18792811 intron CG7720 - chr3R 18792873 intron CG7720 - chr3R 18792935 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-443 2468 chr3R 18807312 18807334 chr3R 18807406 18807431 6 95 3.0 0.0 1.5 2.4 119 chr3R 18807312 intron CG18208 - chr3R 18807372 intron CG18208 - chr3R 18807431 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-443 2469 chr3R 18808468 18808508 chr3R 18808558 18808605 5 86 1.0 3.5 2.2 1.6 137 chr3R 18808468 intron CG18208 - chr3R 18808536 intron CG18208 - chr3R 18808605 intron CG18208 - chr3R_5_18805001 chr3R_18805001 RAL-443 2470 chr3R 18812060 18812107 chr3R 18812158 18812205 13 95 5.5 5.0 5.2 2.1 145 chr3R 18812060 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812205 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-443 2471 chr3R 18839808 18839818 chr3R 18839912 18839922 4 104 8.0 7.0 7.5 0.5 114 chr3R 18839808 intron CG18208 - chr3R 18839865 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_4_18835001 chr3R_18835001 RAL-443 2472 chr3R 18839820 18839838 chr3R 18839909 18839922 5 87 2.5 6.0 4.2 1.0 102 chr3R 18839820 intron CG18208 - chr3R 18839871 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_5_18835001 chr3R_18835001 RAL-443 2473 chr3R 18893072 18893089 chr3R 18893169 18893184 6 96 0.0 7.0 3.5 1.3 112 chr3R 18893072 intergenic not near genes chr3R 18893128 intergenic not near genes chr3R 18893184 intergenic not near genes chr3R_6_18890001 chr3R_18890001 RAL-443 2474 chr3R 18895390 18895582 chr3R 18895486 18895662 29 100 10.0 6.0 8.0 3.2 272 chr3R 18895390 intergenic not near genes chr3R 18895526 intergenic not near genes chr3R 18895662 intergenic not near genes chr3R_29_18895001 chr3R_18895001 RAL-443 2475 chr3R 19013004 19013048 chr3R 19013102 19013145 15 99 2.5 2.0 2.2 4.7 141 chr3R 19013004 intron gukh + chr3R 19013074 intron gukh + chr3R 19013145 intron gukh + chr3R_15_19010001 chr3R_19010001 RAL-443 2476 chr3R 19117046 19117059 chr3R 19117210 19117210 6 160 10.5 0.0 5.2 1.0 164 chr3R 19117046 intron CG6040 + chr3R 19117128 intron CG6040 + chr3R 19117210 intron CG6040 + chr3R_6_19115001 chr3R_19115001 RAL-443 2477 chr3R 19136406 19136409 chr3R 19139772 19139807 Bari1 12 3375 44.0 51.0 47.5 0.2 3401 chr3R 19136406 exon Cyp12a4 + chr3R 19138106 intergenic not near genes chr3R 19139807 3` UTR Ppcs - chr3R_12_19135001 chr3R_19135001 RAL-443 2478 chr3R 19140252 19140290 chr3R 19140720 19140750 10 459 2.5 2.0 2.2 3.1 498 chr3R 19140252 3` UTR Ppcs - chr3R 19140501 3` UTR Ppcs - chr3R 19140750 3` UTR Ppcs - chr3R_10_19140001 chr3R_19140001 RAL-443 2479 chr3R 19248855 19248895 chr3R 19248955 19248980 11 97 2.0 0.0 1.0 5.5 125 chr3R 19248855 intergenic not near genes chr3R 19248918 intergenic not near genes chr3R 19248980 intergenic not near genes chr3R_11_19245001 chr3R_19245001 RAL-443 2480 chr3R 19293583 19293609 chr3R 19294933 19294933 6 1346 10.0 17.5 13.8 0.4 1350 chr3R 19293583 intergenic not near genes chr3R 19294258 intergenic not near genes chr3R 19294933 intergenic not near genes chr3R_6_19290001 chr3R_19290001 RAL-443 2481 chr3R 19344273 19344304 chr3R 19344611 19344642 12 336 3.5 1.5 2.5 3.4 369 chr3R 19344273 intergenic not near genes chr3R 19344458 intergenic not near genes chr3R 19344642 intergenic not near genes chr3R_12_19340001 chr3R_19340001 RAL-443 2482 chr3R 19344646 19344697 chr3R 19344801 19344852 19 153 2.5 7.0 4.8 3.3 206 chr3R 19344646 intergenic not near genes chr3R 19344749 intergenic not near genes chr3R 19344852 intergenic not near genes chr3R_19_19340001 chr3R_19340001 RAL-443 2483 chr3R 19602738 19602784 chr3R 19602836 19602875 19 94 4.0 6.5 5.2 3.1 137 chr3R 19602738 intergenic CG7333 + chr3R 19602806 intergenic CG7333 + chr3R 19602875 intergenic CG7333 +,CG7342 + chr3R_19_19600001 chr3R_19600001 RAL-443 2484 chr3R 19640236 19640280 chr3R 19640618 19640643 16 383 5.5 4.0 4.8 2.8 407 chr3R 19640236 intron subdued - chr3R 19640440 intron subdued - chr3R 19640643 intron subdued - chr3R_16_19640001 chr3R_19640001 RAL-443 2485 chr3R 19827506 19827556 chr3R 19827612 19827651 10 104 3.5 1.5 2.5 2.9 145 chr3R 19827506 intron bnl - chr3R 19827578 intron bnl - chr3R 19827651 intron bnl - chr3R_10_19825001 chr3R_19825001 RAL-443 2486 chr3R 19859990 19859994 chr3R 19860046 19860076 4 68 3.0 3.5 3.2 1.0 86 chr3R 19859990 intron Ire1 - chr3R 19860033 intron Ire1 - chr3R 19860076 intron Ire1 - chr3R_4_19860001 chr3R_19860001 RAL-443 2487 chr3R 19987530 19987571 chr3R 19987853 19987893 14 320 4.5 5.0 4.8 2.4 363 chr3R 19987530 intron Hs6st - chr3R 19987712 intron Hs6st - chr3R 19987893 intron Hs6st - chr3R_14_19985001 chr3R_19985001 RAL-443 2488 chr3R 20041106 20041141 chr3R 20041218 20041257 9 117 2.5 5.0 3.8 1.9 151 chr3R 20041106 intron CG17193 - chr3R 20041182 intron CG17193 - chr3R 20041257 intron CG17193 - chr3R_9_20040001 chr3R_20040001 RAL-443 2489 chr3R 20103324 20103374 chr3R 20103423 20103473 21 98 6.5 8.0 7.2 2.6 149 chr3R 20103324 intergenic not near genes chr3R 20103398 intergenic not near genes chr3R 20103473 intergenic not near genes chr3R_21_20100001 chr3R_20100001 RAL-443 2490 chr3R 20109515 20109565 chr3R 20114741 20114791 copia 18 5223 4.0 2.5 3.2 4.3 5276 chr3R 20109515 intergenic not near genes chr3R 20112153 intergenic not near genes chr3R 20114791 intergenic CG10887 + chr3R_18_20110001 chr3R_20110001 RAL-443 2491 chr3R 20137586 20137627 chr3R 20137691 20137698 10 96 5.5 1.5 3.5 2.2 112 chr3R 20137586 intergenic not near genes chr3R 20137642 intergenic not near genes chr3R 20137698 intergenic not near genes chr3R_10_20135001 chr3R_20135001 RAL-443 2492 chr3R 20156676 20156723 chr3R 20165866 20165903 roo 11 9188 3.5 8.0 5.8 1.6 9227 chr3R 20156676 intergenic not near genes chr3R 20161290 intergenic not near genes chr3R 20165903 intergenic not near genes chr3R_11_20160001 chr3R_20160001 RAL-443 2493 chr3R 20205544 20205595 chr3R 20205686 20205702 21 140 4.0 6.0 5.0 3.5 158 chr3R 20205544 intron Nlg4 + chr3R 20205623 intron Nlg4 + chr3R 20205702 intron Nlg4 + chr3R_21_20205001 chr3R_20205001 RAL-443 2494 chr3R 20209782 20209804 chr3R 20209888 20209908 15 104 5.5 3.0 4.2 2.9 126 chr3R 20209782 intron,5` UTR Nlg4 +,CG17199 - chr3R 20209845 intron Nlg4 + chr3R 20209908 intron Nlg4 + chr3R_15_20205001 chr3R_20205001 RAL-443 2495 chr3R 20209805 20209834 chr3R 20209886 20209940 14 103 1.5 3.0 2.2 4.4 135 chr3R 20209805 intron Nlg4 + chr3R 20209872 intron Nlg4 + chr3R 20209940 intron Nlg4 + chr3R_14_20205001 chr3R_20205001 RAL-443 2496 chr3R 20245270 20245303 chr3R 20248889 20248923 F-element 12 3626 12.0 3.0 7.5 1.4 3653 chr3R 20245270 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248923 intergenic not near genes chr3R_12_20245001 chr3R_20245001 RAL-443 2497 chr3R 20266505 20266545 chr3R 20272996 20273034 Burdock 17 6490 5.0 8.0 6.5 2.3 6529 chr3R 20266505 intron cic + chr3R 20269770 intron cic + chr3R 20273034 intron cic + chr3R_17_20265001 chr3R_20265001 RAL-443 2498 chr3R 20282261 20282308 chr3R 20282357 20282404 16 94 1.5 5.5 3.5 3.6 143 chr3R 20282261 intron cic + chr3R 20282332 intron cic + chr3R 20282404 intron cic + chr3R_16_20280001 chr3R_20280001 RAL-443 2499 chr3R 20308167 20308217 chr3R 20308275 20308336 5 115 3.0 0.0 1.5 2.0 169 chr3R 20308167 intergenic not near genes chr3R 20308252 intergenic not near genes chr3R 20308336 intergenic not near genes chr3R_5_20305001 chr3R_20305001 RAL-443 2500 chr3R 20330980 20331025 chr3R 20331486 20331531 roo 14 505 7.5 10.0 8.8 1.4 551 chr3R 20330980 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331531 intergenic not near genes chr3R_14_20330001 chr3R_20330001 RAL-443 2501 chr3R 20498500 20498547 chr3R 20498613 20498660 4 111 4.0 3.0 3.5 0.9 160 chr3R 20498500 intergenic not near genes chr3R 20498580 intergenic not near genes chr3R 20498660 intergenic not near genes chr3R_4_20495001 chr3R_20495001 RAL-443 2502 chr3R 20506570 20506618 chr3R 20507393 20507424 BS 16 820 0.5 5.5 3.0 4.0 854 chr3R 20506570 intergenic Or92a + chr3R 20506997 intergenic CG4288 - chr3R 20507424 3` UTR CG4288 - chr3R_16_20505001 chr3R_20505001 RAL-443 2503 chr3R 20512983 20513035 chr3R 20515706 20515758 opus 17 2721 5.5 5.0 5.2 2.7 2775 chr3R 20512983 intergenic not near genes chr3R 20514370 intergenic not near genes chr3R 20515758 intergenic not near genes chr3R_17_20510001 chr3R_20510001 RAL-443 2504 chr3R 20730912 20731061 chr3R 20731032 20731148 23 109 0.0 0.0 0.0 23.0 236 chr3R 20730912 intergenic not near genes chr3R 20731030 intergenic not near genes chr3R 20731148 intergenic CG31205 + chr3R_23_20730001 chr3R_20730001 RAL-443 2505 chr3R 20731685 20731690 chr3R 20731963 20731968 4 278 6.5 6.5 6.5 0.5 283 chr3R 20731685 exon CG31205 + chr3R 20731826 exon CG31205 + chr3R 20731968 exon CG31205 + chr3R_4_20730001 chr3R_20730001 RAL-443 2506 chr3R 20733772 20733797 chr3R 20733853 20733859 6 93 4.5 3.0 3.8 1.2 87 chr3R 20733772 intergenic not near genes chr3R 20733816 intergenic not near genes chr3R 20733859 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-443 2507 chr3R 20767522 20767534 chr3R 20767598 20767650 5 106 6.0 1.0 3.5 1.1 128 chr3R 20767522 intron Syp + chr3R 20767586 intron Syp + chr3R 20767650 intron Syp + chr3R_5_20765001 chr3R_20765001 RAL-443 2508 chr3R 20771722 20771729 chr3R 20771787 20771830 5 83 0.0 7.0 3.5 1.1 108 chr3R 20771722 intron,intron Syp +,Takl1 - chr3R 20771776 intron,intron Syp +,Takl1 - chr3R 20771830 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-443 2509 chr3R 20787429 20787458 chr3R 20787530 20787564 7 106 5.5 7.0 6.2 1.0 135 chr3R 20787429 intron Syp + chr3R 20787496 intron Syp + chr3R 20787564 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-443 2510 chr3R 20848339 20848356 chr3R 20848449 20848466 7 109 1.5 6.0 3.8 1.5 127 chr3R 20848339 intergenic not near genes chr3R 20848402 intergenic not near genes chr3R 20848466 intergenic not near genes chr3R_7_20845001 chr3R_20845001 RAL-443 2511 chr3R 20850066 20850113 chr3R 20850170 20850213 18 102 1.5 2.5 2.0 6.0 147 chr3R 20850066 intergenic RpS30 + chr3R 20850140 intergenic RpS30 + chr3R 20850213 intergenic RpS30 + chr3R_18_20850001 chr3R_20850001 RAL-443 2512 chr3R 20854484 20854498 chr3R 20859276 20859293 Doc 4 4795 13.0 6.0 9.5 0.4 4809 chr3R 20854484 intron Ir93a - chr3R 20856888 intron Ir93a - chr3R 20859293 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-443 2513 chr3R 20899912 20899938 chr3R 20900017 20900054 6 114 4.0 6.5 5.2 1.0 142 chr3R 20899912 intergenic not near genes chr3R 20899983 intergenic not near genes chr3R 20900054 intergenic not near genes chr3R_6_20895001 chr3R_20895001 RAL-443 2514 chr3R 20901322 20901374 chr3R 20901428 20901462 14 91 2.0 2.0 2.0 4.7 140 chr3R 20901322 intergenic not near genes chr3R 20901392 intergenic not near genes chr3R 20901462 intergenic CG5621 + chr3R_14_20900001 chr3R_20900001 RAL-443 2515 chr3R 20936067 20936102 chr3R 20936164 20936199 13 97 4.5 5.5 5.0 2.2 132 chr3R 20936067 intron CG31191 - chr3R 20936133 intron CG31191 - chr3R 20936199 intron CG31191 - chr3R_13_20935001 chr3R_20935001 RAL-443 2516 chr3R 20942792 20942842 chr3R 20942888 20942926 10 87 1.0 3.0 2.0 3.3 134 chr3R 20942792 intron CG31191 - chr3R 20942859 intron CG31191 - chr3R 20942926 intron CG31191 - chr3R_10_20940001 chr3R_20940001 RAL-443 2517 chr3R 21013995 21014043 chr3R 21014093 21014141 16 93 8.0 9.0 8.5 1.7 146 chr3R 21013995 3` UTR Calx + chr3R 21014068 3` UTR Calx + chr3R 21014141 3` UTR Calx + chr3R_16_21010001 chr3R_21010001 RAL-443 2518 chr3R 21041097 21041131 chr3R 21041252 21041287 13 168 2.5 6.0 4.2 2.5 190 chr3R 21041097 exon Dhc93AB - chr3R 21041192 intron Dhc93AB - chr3R 21041287 intron Dhc93AB - chr3R_13_21040001 chr3R_21040001 RAL-443 2519 chr3R 21141673 21141704 chr3R 21150153 21150173 Tirant 6 8486 6.0 0.5 3.2 1.4 8500 chr3R 21141673 intron SNF4Agamma + chr3R 21145923 intron SNF4Agamma + chr3R 21150173 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-443 2520 chr3R 21154554 21154586 chr3R 21154789 21154816 6 232 5.5 6.0 5.8 0.9 262 chr3R 21154554 intron SNF4Agamma + chr3R 21154685 intron SNF4Agamma + chr3R 21154816 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-443 2521 chr3R 21240435 21240456 chr3R 21240547 21240568 5 112 1.0 5.5 3.2 1.2 133 chr3R 21240435 intergenic not near genes chr3R 21240502 intergenic not near genes chr3R 21240568 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-443 2522 chr3R 21240465 21240479 chr3R 21240536 21240590 12 103 0.0 3.0 1.5 4.8 125 chr3R 21240465 intergenic not near genes chr3R 21240528 intergenic not near genes chr3R 21240590 intergenic not near genes chr3R_12_21240001 chr3R_21240001 RAL-443 2523 chr3R 21322954 21322978 chr3R 21323053 21323063 4 96 3.0 2.0 2.5 1.1 109 chr3R 21322954 exon CG16791 - chr3R 21323008 intron CG16791 - chr3R 21323063 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-443 2524 chr3R 21383274 21383301 chr3R 21383352 21383401 6 92 1.0 3.0 2.0 2.0 127 chr3R 21383274 intergenic not near genes chr3R 21383338 intergenic not near genes chr3R 21383401 intergenic not near genes chr3R_6_21380001 chr3R_21380001 RAL-443 2525 chr3R 21464384 21464425 chr3R 21464490 21464529 10 101 3.5 3.5 3.5 2.2 145 chr3R 21464384 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464529 intergenic not near genes chr3R_10_21460001 chr3R_21460001 RAL-443 2526 chr3R 21471996 21472028 chr3R 21472097 21472129 11 94 4.0 5.0 4.5 2.0 133 chr3R 21471996 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472129 intergenic not near genes chr3R_11_21470001 chr3R_21470001 RAL-443 2527 chr3R 21481368 21481394 chr3R 21481479 21481480 4 102 7.5 0.0 3.8 0.8 112 chr3R 21481368 intergenic not near genes chr3R 21481424 intergenic not near genes chr3R 21481480 intergenic not near genes chr3R_4_21480001 chr3R_21480001 RAL-443 2528 chr3R 21483804 21483830 chr3R 21483914 21483940 5 104 5.0 1.5 3.2 1.2 136 chr3R 21483804 exon CG7922 + chr3R 21483872 intron CG7922 + chr3R 21483940 intron CG7922 + chr3R_5_21480001 chr3R_21480001 RAL-443 2529 chr3R 21518252 21518266 chr3R 21518356 21518370 5 104 0.0 5.5 2.8 1.3 118 chr3R 21518252 intergenic not near genes chr3R 21518311 intergenic not near genes chr3R 21518370 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-443 2530 chr3R 21519966 21520146 chr3R 21520087 21520216 26 114 1.0 1.0 1.0 13.0 250 chr3R 21519966 intergenic not near genes chr3R 21520091 intergenic not near genes chr3R 21520216 intergenic not near genes chr3R_26_21520001 chr3R_21520001 RAL-443 2531 chr3R 21624085 21624106 chr3R 21624199 21624220 6 111 5.0 2.0 3.5 1.3 135 chr3R 21624085 exon E2f - chr3R 21624152 intron E2f - chr3R 21624220 intron E2f - chr3R_6_21620001 chr3R_21620001 RAL-443 2532 chr3R 21725666 21725686 chr3R 21725822 21725842 6 155 0.0 8.5 4.2 1.2 176 chr3R 21725666 intergenic not near genes chr3R 21725754 intergenic not near genes chr3R 21725842 intergenic not near genes chr3R_6_21725001 chr3R_21725001 RAL-443 2533 chr3R 21761117 21761129 chr3R 21768529 21768541 mdg1 4 7412 7.0 9.5 8.2 0.4 7424 chr3R 21761117 exon CG42335 + chr3R 21764829 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-443 2534 chr3R 21761131 21761150 chr3R 21768509 21768519 mdg1 4 7383 4.5 5.0 4.8 0.7 7388 chr3R 21761131 exon CG42335 + chr3R 21764825 intron CG42335 + chr3R 21768519 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-443 2535 chr3R 21845869 21845920 chr3R 21846060 21846111 15 187 5.0 7.0 6.0 2.1 242 chr3R 21845869 5` UTR,exon CR44087 +,Gr93d - chr3R 21845990 intron,exon CR44087 +,Gr93d - chr3R 21846111 5` UTR,exon CR44087 +,Gr93d - chr3R_15_21845001 chr3R_21845001 RAL-443 2536 chr3R 21883953 21883986 chr3R 21884050 21884079 5 97 1.5 4.5 3.0 1.2 126 chr3R 21883953 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884016 intron,3` UTR CR45046 -,fit - chr3R 21884079 3` UTR,exon CR45046 -,fit - chr3R_5_21880001 chr3R_21880001 RAL-443 2537 chr3R 21903614 21903630 chr3R 21903731 21903747 9 117 0.0 5.0 2.5 2.6 133 chr3R 21903614 intron CG6678 + chr3R 21903680 intron CG6678 + chr3R 21903747 intron CG6678 + chr3R_9_21900001 chr3R_21900001 RAL-443 2538 chr3R 21907534 21907534 chr3R 28831801 28831802 11 6924268 25.0 8.5 16.8 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-443 2539 chr3R 21907535 21907535 chr3R 28831801 28831802 20 6924266 25.0 8.5 16.8 1.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-443 2540 chr3R 21907536 21907536 chr3R 28831801 28831802 22 6924266 25.0 8.5 16.8 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-443 2541 chr3R 22074877 22074907 chr3R 22082929 22082980 4 8060 24.5 24.5 24.5 0.2 8103 chr3R 22074877 3` UTR how + chr3R 22078928 3` UTR how + chr3R 22082980 exon CG13408 + chr3R_4_22075001 chr3R_22075001 RAL-443 2542 chr3R 22084615 22084624 chr3R 22084724 22084733 8 109 1.0 10.5 5.8 1.2 118 chr3R 22084615 intergenic not near genes chr3R 22084674 intergenic not near genes chr3R 22084733 intergenic not near genes chr3R_8_22080001 chr3R_22080001 RAL-443 2543 chr3R 22175657 22175672 chr3R 22175994 22176009 6 336 2.5 7.0 4.8 1.0 352 chr3R 22175657 intron SKIP + chr3R 22175833 intron SKIP + chr3R 22176009 intron SKIP + chr3R_6_22175001 chr3R_22175001 RAL-443 2544 chr3R 22175673 22175679 chr3R 22175987 22176016 4 331 2.5 6.5 4.5 0.7 343 chr3R 22175673 intron SKIP + chr3R 22175844 intron SKIP + chr3R 22176016 intron SKIP + chr3R_4_22175001 chr3R_22175001 RAL-443 2545 chr3R 22234671 22234708 chr3R 22236003 22236037 pogo 20 1329 7.5 4.5 6.0 2.9 1366 chr3R 22234671 intron SKIP + chr3R 22235354 intron SKIP + chr3R 22236037 intron SKIP + chr3R_20_22235001 chr3R_22235001 RAL-443 2546 chr3R 22239471 22239483 chr3R 22248551 22248563 roo 8 9080 18.0 0.5 9.2 0.8 9092 chr3R 22239471 intron SKIP + chr3R 22244017 intron SKIP + chr3R 22248563 intron SKIP + chr3R_8_22240001 chr3R_22240001 RAL-443 2547 chr3R 22239488 22239517 chr3R 22248550 22248585 roo 5 9067 8.5 0.5 4.5 0.9 9097 chr3R 22239488 intron SKIP + chr3R 22244036 intron SKIP + chr3R 22248585 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-443 2548 chr3R 22350044 22350061 chr3R 22350128 22350160 4 94 4.5 4.0 4.2 0.8 116 chr3R 22350044 intergenic not near genes chr3R 22350102 intergenic not near genes chr3R 22350160 intergenic not near genes chr3R_4_22350001 chr3R_22350001 RAL-443 2549 chr3R 22355083 22355126 chr3R 22355313 22355325 11 227 1.5 3.5 2.5 3.1 242 chr3R 22355083 intron rdhB + chr3R 22355204 intron rdhB + chr3R 22355325 intron rdhB + chr3R_11_22355001 chr3R_22355001 RAL-443 2550 chr3R 22428565 22428608 chr3R 22428653 22428670 17 89 5.0 6.0 5.5 2.6 105 chr3R 22428565 intron CG13847 - chr3R 22428618 intron CG13847 - chr3R 22428670 intron CG13847 - chr3R_17_22425001 chr3R_22425001 RAL-443 2551 chr3R 22450543 22450562 chr3R 22453182 22453207 NOF 7 2643 7.0 6.0 6.5 0.9 2664 chr3R 22450543 intron CG34376 + chr3R 22451875 intron CG34376 + chr3R 22453207 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-443 2552 chr3R 22507801 22507815 chr3R 22507870 22507919 7 89 6.0 5.0 5.5 1.1 118 chr3R 22507801 intron Octbeta1R + chr3R 22507860 intron Octbeta1R + chr3R 22507919 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-443 2553 chr3R 22794260 22794301 chr3R 22794506 22794547 15 242 5.0 4.5 4.8 2.6 287 chr3R 22794260 intergenic CG7029 + chr3R 22794404 intergenic CG7029 + chr3R 22794547 intergenic not near genes chr3R_15_22790001 chr3R_22790001 RAL-443 2554 chr3R 22877295 22877307 chr3R 22877432 22877455 4 144 5.5 7.0 6.2 0.6 160 chr3R 22877295 intergenic not near genes chr3R 22877375 intergenic not near genes chr3R 22877455 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-443 2555 chr3R 22877311 22877326 chr3R 22877427 22877469 6 133 1.5 4.0 2.8 1.6 158 chr3R 22877311 intergenic not near genes chr3R 22877390 intergenic not near genes chr3R 22877469 intergenic not near genes chr3R_6_22875001 chr3R_22875001 RAL-443 2556 chr3R 22880915 22880957 chr3R 22881073 22881114 15 157 4.0 6.5 5.2 2.4 199 chr3R 22880915 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881114 intergenic not near genes chr3R_15_22880001 chr3R_22880001 RAL-443 2557 chr3R 22881184 22881232 chr3R 22884910 22884950 Doc 9 3718 5.0 2.5 3.8 1.9 3766 chr3R 22881184 intergenic not near genes chr3R 22883067 intergenic not near genes chr3R 22884950 intergenic not near genes chr3R_9_22880001 chr3R_22880001 RAL-443 2558 chr3R 23073654 23073687 chr3R 23073744 23073779 12 98 5.0 3.5 4.2 2.3 125 chr3R 23073654 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073779 intron CG13830 - chr3R_12_23070001 chr3R_23070001 RAL-443 2559 chr3R 23211963 23211983 chr3R 23212061 23212081 9 96 3.0 3.5 3.2 2.1 118 chr3R 23211963 intron cnc - chr3R 23212022 intron cnc - chr3R 23212081 intron cnc - chr3R_9_23210001 chr3R_23210001 RAL-443 2560 chr3R 23225039 23225052 chr3R 23225135 23225137 4 93 7.0 0.0 3.5 0.9 98 chr3R 23225039 intron cnc - chr3R 23225088 intron cnc - chr3R 23225137 intron cnc - chr3R_4_23225001 chr3R_23225001 RAL-443 2561 chr3R 23277328 23277355 chr3R 23277436 23277464 11 108 3.5 1.5 2.5 3.1 136 chr3R 23277328 intron orb - chr3R 23277396 intron orb - chr3R 23277464 intron orb - chr3R_11_23275001 chr3R_23275001 RAL-443 2562 chr3R 23311666 23311708 chr3R 23311780 23311822 11 106 16.0 8.5 12.2 0.8 156 chr3R 23311666 intron pnt - chr3R 23311744 intron pnt - chr3R 23311822 intron pnt - chr3R_11_23310001 chr3R_23310001 RAL-443 2563 chr3R 23543298 23543337 chr3R 23543395 23543414 11 94 5.0 8.0 6.5 1.5 116 chr3R 23543298 intergenic not near genes chr3R 23543356 intergenic not near genes chr3R 23543414 intergenic not near genes chr3R_11_23540001 chr3R_23540001 RAL-443 2564 chr3R 23549144 23549182 chr3R 23549259 23549285 5 114 3.5 3.0 3.2 1.2 141 chr3R 23549144 intergenic not near genes chr3R 23549214 intergenic not near genes chr3R 23549285 intergenic not near genes chr3R_5_23545001 chr3R_23545001 RAL-443 2565 chr3R 23558379 23558429 chr3R 23560180 23560208 Bari1 15 1798 1.5 1.0 1.2 6.8 1829 chr3R 23558379 intron beat-IV + chr3R 23559294 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_15_23555001 chr3R_23555001 RAL-443 2566 chr3R 23565837 23565856 chr3R 23565944 23565963 10 107 4.0 3.0 3.5 2.2 126 chr3R 23565837 intron beat-IV + chr3R 23565900 intron beat-IV + chr3R 23565963 intron beat-IV + chr3R_10_23565001 chr3R_23565001 RAL-443 2567 chr3R 23598883 23598887 chr3R 23598931 23598985 4 78 6.0 10.0 8.0 0.4 102 chr3R 23598883 exon CG10183 - chr3R 23598934 exon CG10183 - chr3R 23598985 exon CG10183 - chr3R_4_23595001 chr3R_23595001 RAL-443 2568 chr3R 23684678 23684724 chr3R 23685184 23685230 roo 4 494 2.5 4.0 3.2 1.0 552 chr3R 23684678 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685230 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-443 2569 chr3R 23808469 23808504 chr3R 23808599 23808644 14 133 6.5 9.0 7.8 1.6 175 chr3R 23808469 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808556 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808644 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_14_23805001 chr3R_23805001 RAL-443 2570 chr3R 23820629 23820663 chr3R 23820718 23820747 9 94 3.5 5.5 4.5 1.6 118 chr3R 23820629 5` UTR CG34355 + chr3R 23820688 5` UTR CG34355 + chr3R 23820747 5` UTR CG34355 + chr3R_9_23820001 chr3R_23820001 RAL-443 2571 chr3R 23835398 23835433 chr3R 23844553 23844603 roo 11 9168 3.5 4.5 4.0 2.2 9205 chr3R 23835398 intron CG34355 + chr3R 23840000 intron CG34355 + chr3R 23844603 intron CG34355 + chr3R_11_23835001 chr3R_23835001 RAL-443 2572 chr3R 23851067 23851090 chr3R 23858754 23858772 opus 10 7683 9.0 15.5 12.2 0.8 7705 chr3R 23851067 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858772 intergenic not near genes chr3R_10_23850001 chr3R_23850001 RAL-443 2573 chr3R 23888073 23888113 chr3R 23888171 23888195 21 100 8.0 11.5 9.8 1.9 122 chr3R 23888073 intron Pli - chr3R 23888134 intron Pli - chr3R 23888195 intron Pli - chr3R_21_23885001 chr3R_23885001 RAL-443 2574 chr3R 23944891 23944934 chr3R 23944996 23945039 9 95 7.5 5.5 6.5 1.2 148 chr3R 23944891 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945039 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-443 2575 chr3R 24011651 24011680 chr3R 24011752 24011783 5 103 1.5 6.0 3.8 1.0 132 chr3R 24011651 intron KrT95D - chr3R 24011717 intron KrT95D - chr3R 24011783 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-443 2576 chr3R 24072092 24072123 chr3R 24072528 24072575 jockey 4 449 2.0 1.5 1.8 1.4 483 chr3R 24072092 intron 4EHP - chr3R 24072334 intron 4EHP - chr3R 24072575 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-443 2577 chr3R 24076898 24076937 chr3R 24078385 24078424 hobo 11 1484 5.5 4.0 4.8 1.9 1526 chr3R 24076898 intron 4EHP - chr3R 24077661 intron 4EHP - chr3R 24078424 intron 4EHP - chr3R_11_24075001 chr3R_24075001 RAL-443 2578 chr3R 24100437 24100616 chr3R 24100552 24100848 30 181 4.5 5.5 5.0 5.0 411 chr3R 24100437 intron 4EHP - chr3R 24100642 intron 4EHP - chr3R 24100848 intron 4EHP - chr3R_30_24100001 chr3R_24100001 RAL-443 2579 chr3R 24207208 24207247 chr3R 24212299 24212321 flea 10 5087 3.0 11.5 7.2 1.2 5113 chr3R 24207208 intron twin - chr3R 24209764 intron twin - chr3R 24212321 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-443 2580 chr3R 24385874 24385901 chr3R 24385964 24386014 7 104 7.5 6.0 6.8 0.9 140 chr3R 24385874 intergenic CG5768 - chr3R 24385944 intergenic CG5768 - chr3R 24386014 intergenic CG5768 - chr3R_7_24385001 chr3R_24385001 RAL-443 2581 chr3R 21907535 21907535 chr3R 24389465 24389465 4 2481930 25.0 27.0 26.0 0.1 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-443 2582 chr3R 24431601 24431616 chr3R 24431695 24431713 8 97 7.0 0.0 3.5 1.8 112 chr3R 24431601 intron nAChRalpha1 - chr3R 24431657 intron nAChRalpha1 - chr3R 24431713 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-443 2583 chr3R 24433469 24433501 chr3R 24433566 24433595 10 97 4.0 6.5 5.2 1.6 126 chr3R 24433469 intron nAChRalpha1 - chr3R 24433532 intron nAChRalpha1 - chr3R 24433595 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-443 2584 chr3R 24441615 24441632 chr3R 24441917 24441934 5 299 9.0 10.0 9.5 0.5 319 chr3R 24441615 intron nAChRalpha1 - chr3R 24441774 intron nAChRalpha1 - chr3R 24441934 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-443 2585 chr3R 24441638 24441649 chr3R 24441910 24441910 4 271 6.0 8.5 7.2 0.5 272 chr3R 24441638 intron nAChRalpha1 - chr3R 24441774 intron nAChRalpha1 - chr3R 24441910 intron nAChRalpha1 - chr3R_4_24440001 chr3R_24440001 RAL-443 2586 chr3R 24493265 24493289 chr3R 24493507 24493538 BS 11 247 12.0 8.0 10.0 1.0 273 chr3R 24493265 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493538 intergenic not near genes chr3R_11_24490001 chr3R_24490001 RAL-443 2587 chr3R 24493290 24493306 chr3R 24493501 24493540 BS 8 230 8.5 6.5 7.5 0.9 250 chr3R 24493290 intergenic not near genes chr3R 24493415 intergenic not near genes chr3R 24493540 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-443 2588 chr3R 24523891 24523926 chr3R 24523987 24524032 4 100 5.0 6.0 5.5 0.6 141 chr3R 24523891 intergenic CG13622 - chr3R 24523962 intergenic CG13622 - chr3R 24524032 intergenic CG13622 - chr3R_4_24520001 chr3R_24520001 RAL-443 2589 chr3R 24527794 24527812 chr3R 24527905 24527923 6 111 5.5 6.0 5.8 0.9 129 chr3R 24527794 intergenic CG6607 +,CG13618 + chr3R 24527858 intergenic CG6607 +,CG13618 + chr3R 24527923 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 RAL-443 2590 chr3R 24527813 24527834 chr3R 24527893 24527934 11 105 2.5 5.0 3.8 2.3 121 chr3R 24527813 intergenic CG6607 +,CG13618 + chr3R 24527874 intergenic CG6607 +,CG13618 + chr3R 24527934 intergenic CG6607 +,CG13618 + chr3R_11_24525001 chr3R_24525001 RAL-443 2591 chr3R 24605531 24605554 chr3R 24605651 24605674 6 118 4.5 5.5 5.0 1.0 143 chr3R 24605531 intron mld + chr3R 24605602 intron mld + chr3R 24605674 intron mld + chr3R_6_24605001 chr3R_24605001 RAL-443 2592 chr3R 24667586 24667625 chr3R 24667683 24667720 15 96 6.0 0.0 3.0 3.8 134 chr3R 24667586 intron slo + chr3R 24667653 intron slo + chr3R 24667720 intron slo + chr3R_15_24665001 chr3R_24665001 RAL-443 2593 chr3R 24730070 24730109 chr3R 24732468 24732470 Doc 7 2388 4.5 0.0 2.2 2.2 2400 chr3R 24730070 intron tok + chr3R 24731270 intron tok + chr3R 24732470 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-443 2594 chr3R 24776722 24776770 chr3R 24776812 24776850 11 82 6.0 3.0 4.5 2.0 128 chr3R 24776722 intron CG42331 + chr3R 24776786 intron CG42331 + chr3R 24776850 intron CG42331 + chr3R_11_24775001 chr3R_24775001 RAL-443 2595 chr3R 24912462 24912514 chr3R 24912562 24912616 14 102 2.0 2.5 2.2 4.4 154 chr3R 24912462 intergenic not near genes chr3R 24912539 intergenic CR44267 + chr3R 24912616 intergenic CR44267 + chr3R_14_24910001 chr3R_24910001 RAL-443 2596 chr3R 24927111 24927149 chr3R 24931922 24931960 Doc 22 4808 11.0 4.0 7.5 2.6 4849 chr3R 24927111 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931960 intergenic CG11771 + chr3R_22_24925001 chr3R_24925001 RAL-443 2597 chr3R 24949817 24949828 chr3R 24950171 24950199 6 367 9.0 6.5 7.8 0.7 382 chr3R 24949817 intergenic CG13646 + chr3R 24950008 intergenic CG13646 + chr3R 24950199 intergenic not near genes chr3R_6_24950001 chr3R_24950001 RAL-443 2598 chr3R 24974896 24974904 chr3R 24974995 24975002 4 99 7.5 5.5 6.5 0.5 106 chr3R 24974896 intergenic not near genes chr3R 24974949 intergenic not near genes chr3R 24975002 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-443 2599 chr3R 24974906 24974935 chr3R 24974994 24975024 13 96 3.5 5.5 4.5 2.4 118 chr3R 24974906 intergenic not near genes chr3R 24974965 intergenic not near genes chr3R 24975024 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-443 2600 chr3R 25004879 25004917 chr3R 25004982 25005005 13 101 6.5 0.5 3.5 2.9 126 chr3R 25004879 intron tnc + chr3R 25004942 intron tnc + chr3R 25005005 intron tnc + chr3R_13_25000001 chr3R_25000001 RAL-443 2601 chr3R 25027518 25027570 chr3R 25027751 25027788 16 226 4.5 6.0 5.2 2.6 270 chr3R 25027518 intron Hr96 + chr3R 25027653 intron Hr96 + chr3R 25027788 intron Hr96 + chr3R_16_25025001 chr3R_25025001 RAL-443 2602 chr3R 25166344 25166391 chr3R 25166440 25166487 18 95 2.5 4.0 3.2 4.3 143 chr3R 25166344 intergenic not near genes chr3R 25166416 intergenic not near genes chr3R 25166487 intergenic not near genes chr3R_18_25165001 chr3R_25165001 RAL-443 2603 chr3R 25200527 25200574 chr3R 25200628 25200675 20 98 3.0 6.0 4.5 3.6 148 chr3R 25200527 intron,intron Cad96Ca -,CG13654 + chr3R 25200601 intron,intron Cad96Ca -,CG13654 + chr3R 25200675 intron,intron Cad96Ca -,CG13654 + chr3R_20_25200001 chr3R_25200001 RAL-443 2604 chr3R 25310933 25310974 chr3R 25311033 25311074 16 99 6.5 3.5 5.0 2.7 141 chr3R 25310933 5` UTR CG31099 - chr3R 25311004 intergenic CG31087 -,CG31099 - chr3R 25311074 3` UTR CG31087 - chr3R_16_25310001 chr3R_25310001 RAL-443 2605 chr3R 25368456 25368467 chr3R 25368594 25368605 6 137 10.0 0.0 5.0 1.0 149 chr3R 25368456 intron Fur1 - chr3R 25368530 intron Fur1 - chr3R 25368605 intron Fur1 - chr3R_6_25365001 chr3R_25365001 RAL-443 2606 chr3R 25368471 25368499 chr3R 25368592 25368616 10 132 6.5 0.0 3.2 2.4 145 chr3R 25368471 intron Fur1 - chr3R 25368544 intron Fur1 - chr3R 25368616 intron Fur1 - chr3R_10_25365001 chr3R_25365001 RAL-443 2607 chr3R 25408565 25408579 chr3R 25408822 25408841 7 273 1.5 3.0 2.2 2.2 276 chr3R 25408565 intron Fur1 - chr3R 25408703 intron Fur1 - chr3R 25408841 intron Fur1 - chr3R_7_25405001 chr3R_25405001 RAL-443 2608 chr3R 25411766 25411800 chr3R 25411882 25411923 9 120 1.5 2.5 2.0 3.0 157 chr3R 25411766 intron Fur1 - chr3R 25411844 intron Fur1 - chr3R 25411923 intron Fur1 - chr3R_9_25410001 chr3R_25410001 RAL-443 2609 chr3R 25411801 25411806 chr3R 25411874 25411929 8 111 1.5 2.0 1.8 2.9 128 chr3R 25411801 intron Fur1 - chr3R 25411865 intron Fur1 - chr3R 25411929 intron Fur1 - chr3R_8_25410001 chr3R_25410001 RAL-443 2610 chr3R 25431422 25431445 chr3R 25431520 25431551 13 103 3.0 4.0 3.5 2.9 129 chr3R 25431422 intron Fur1 - chr3R 25431486 intron Fur1 - chr3R 25431551 intron Fur1 - chr3R_13_25430001 chr3R_25430001 RAL-443 2611 chr3R 25436131 25436182 chr3R 25436239 25436285 16 104 5.0 6.5 5.8 2.4 154 chr3R 25436131 intron Fur1 - chr3R 25436208 intron Fur1 - chr3R 25436285 intron Fur1 - chr3R_16_25435001 chr3R_25435001 RAL-443 2612 chr3R 25440769 25440978 chr3R 25440877 25441075 10 100 0.0 0.0 0.0 10.0 306 chr3R 25440769 intron Fur1 - chr3R 25440922 intron Fur1 - chr3R 25441075 intron Fur1 - chr3R_10_25440001 chr3R_25440001 RAL-443 2613 chr3R 25441815 25441867 chr3R 25442079 25442131 22 261 3.5 4.5 4.0 4.4 316 chr3R 25441815 intron Fur1 - chr3R 25441973 intron Fur1 - chr3R 25442131 intron Fur1 - chr3R_22_25440001 chr3R_25440001 RAL-443 2614 chr3R 25512378 25512422 chr3R 25512477 25512521 15 93 3.5 4.0 3.8 3.1 143 chr3R 25512378 intergenic not near genes chr3R 25512450 intergenic not near genes chr3R 25512521 intergenic not near genes chr3R_15_25510001 chr3R_25510001 RAL-443 2615 chr3R 25514416 25514451 chr3R 25514517 25514552 11 100 0.0 4.5 2.2 3.4 136 chr3R 25514416 intergenic not near genes chr3R 25514484 intergenic not near genes chr3R 25514552 intergenic not near genes chr3R_11_25510001 chr3R_25510001 RAL-443 2616 chr3R 25520255 25520279 chr3R 25520351 25520365 9 95 2.0 7.5 4.8 1.6 110 chr3R 25520255 intron msi + chr3R 25520310 intron msi + chr3R 25520365 intron msi + chr3R_9_25520001 chr3R_25520001 RAL-443 2617 chr3R 25529880 25529932 chr3R 25529977 25530029 19 94 3.5 7.0 5.2 3.1 149 chr3R 25529880 intron msi + chr3R 25529954 intron msi + chr3R 25530029 intron msi + chr3R_19_25525001 chr3R_25525001 RAL-443 2618 chr3R 7773344 7773344 chr3R 25538123 25538124 17 17764780 19.5 10.5 15.0 1.1 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_17_16655001 chr3R_16655001 RAL-443 2619 chr3R 25725821 25725860 chr3R 25734991 25735040 roo 12 9175 5.5 15.0 10.2 1.1 9219 chr3R 25725821 intron LpR2 - chr3R 25730430 intron LpR2 - chr3R 25735040 intron LpR2 - chr3R_12_25730001 chr3R_25730001 RAL-443 2620 chr3R 25832706 25832717 chr3R 25841872 25841919 roo 4 9190 2.5 3.0 2.8 1.1 9213 chr3R 25832706 exon alpha4GT2 + chr3R 25837312 intron alpha4GT2 + chr3R 25841919 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-443 2621 chr3R 25843615 25843669 chr3R 25843765 25843801 16 148 2.5 4.5 3.5 3.6 186 chr3R 25843615 intergenic CR45653 + chr3R 25843708 intergenic CR45653 + chr3R 25843801 intergenic CR45653 + chr3R_16_25840001 chr3R_25840001 RAL-443 2622 chr3R 25905620 25905652 chr3R 25905743 25905775 9 123 9.0 4.0 6.5 1.2 155 chr3R 25905620 intron CR43259 - chr3R 25905698 intron CR43259 - chr3R 25905775 intron CR43259 - chr3R_9_25905001 chr3R_25905001 RAL-443 2623 chr3R 25927486 25927537 chr3R 25927588 25927639 13 96 6.0 5.5 5.8 1.9 153 chr3R 25927486 intron CCAP-R - chr3R 25927562 intron CCAP-R - chr3R 25927639 intron CCAP-R - chr3R_13_25925001 chr3R_25925001 RAL-443 2624 chr3R 25982062 25982111 chr3R 25982170 25982172 12 100 5.0 6.5 5.8 1.8 110 chr3R 25982062 3` UTR CG42261 + chr3R 25982117 3` UTR CG42261 + chr3R 25982172 3` UTR CG42261 + chr3R_12_25980001 chr3R_25980001 RAL-443 2625 chr3R 25983677 25983722 chr3R 25983795 25983812 12 107 2.5 5.0 3.8 2.5 135 chr3R 25983677 exon Nf1 + chr3R 25983744 intron Nf1 + chr3R 25983812 intron Nf1 + chr3R_12_25980001 chr3R_25980001 RAL-443 2626 chr3R 25997251 25997267 chr3R 25997358 25997374 4 103 4.5 3.0 3.8 0.8 123 chr3R 25997251 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997312 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R 25997374 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_4_25995001 chr3R_25995001 RAL-443 2627 chr3R 26010165 26010174 chr3R 26010257 26010271 5 94 15.5 5.0 10.2 0.4 106 chr3R 26010165 intergenic not near genes chr3R 26010218 intergenic not near genes chr3R 26010271 intergenic not near genes chr3R_5_26010001 chr3R_26010001 RAL-443 2628 chr3R 26010185 26010193 chr3R 26010252 26010256 4 81 10.0 4.5 7.2 0.5 71 chr3R 26010185 intergenic not near genes chr3R 26010220 intergenic not near genes chr3R 26010256 intergenic not near genes chr3R_4_26010001 chr3R_26010001 RAL-443 2629 chr3R 26010198 26010207 chr3R 26010250 26010304 7 81 5.5 4.0 4.8 1.2 106 chr3R 26010198 intergenic not near genes chr3R 26010251 intergenic not near genes chr3R 26010304 intergenic not near genes chr3R_7_26010001 chr3R_26010001 RAL-443 2630 chr3R 26038343 26038387 chr3R 26038449 26038492 11 105 4.5 4.0 4.2 2.1 149 chr3R 26038343 intergenic E(spl)m7-HLH + chr3R 26038418 intergenic E(spl)m7-HLH + chr3R 26038492 intergenic E(spl)m7-HLH + chr3R_11_26035001 chr3R_26035001 RAL-443 2631 chr3R 26038947 26038999 chr3R 26039104 26039156 21 153 4.5 6.0 5.2 3.4 209 chr3R 26038947 intergenic not near genes chr3R 26039052 intergenic not near genes chr3R 26039156 intergenic not near genes chr3R_21_26035001 chr3R_26035001 RAL-443 2632 chr3R 26122442 26122476 chr3R 26122538 26122571 4 96 2.0 4.5 3.2 1.0 129 chr3R 26122442 intron CG31324 + chr3R 26122506 intron CG31324 + chr3R 26122571 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-443 2633 chr3R 26122977 26122992 chr3R 26123074 26123088 7 93 1.5 3.0 2.2 2.2 111 chr3R 26122977 intron CG31324 + chr3R 26123032 intron CG31324 + chr3R 26123088 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-443 2634 chr3R 26126532 26126570 chr3R 26126638 26126676 13 103 3.0 9.0 6.0 1.9 144 chr3R 26126532 intron CG31324 + chr3R 26126604 intron CG31324 + chr3R 26126676 intron,5` UTR CG31324 +,CG14556 + chr3R_13_26125001 chr3R_26125001 RAL-443 2635 chr3R 26138372 26138421 chr3R 26138484 26138493 13 107 0.0 3.5 1.8 4.6 121 chr3R 26138372 intergenic not near genes chr3R 26138432 intergenic not near genes chr3R 26138493 intergenic not near genes chr3R_13_26135001 chr3R_26135001 RAL-443 2636 chr3R 26292088 26292139 chr3R 26292188 26292234 15 98 5.5 7.5 6.5 2.0 146 chr3R 26292088 intergenic not near genes chr3R 26292161 intergenic not near genes chr3R 26292234 intergenic not near genes chr3R_15_26290001 chr3R_26290001 RAL-443 2637 chr3R 26301812 26301855 chr3R 26301913 26301956 16 100 8.5 8.5 8.5 1.7 144 chr3R 26301812 intergenic not near genes chr3R 26301884 intergenic not near genes chr3R 26301956 intergenic not near genes chr3R_16_26300001 chr3R_26300001 RAL-443 2638 chr3R 26302097 26302116 chr3R 26302323 26302343 8 226 15.5 5.5 10.5 0.7 246 chr3R 26302097 intergenic not near genes chr3R 26302220 intergenic not near genes chr3R 26302343 intergenic not near genes chr3R_8_26300001 chr3R_26300001 RAL-443 2639 chr3R 26302119 26302142 chr3R 26302320 26302369 9 215 7.5 5.5 6.5 1.2 250 chr3R 26302119 intergenic not near genes chr3R 26302244 intergenic not near genes chr3R 26302369 intergenic not near genes chr3R_9_26300001 chr3R_26300001 RAL-443 2640 chr3R 26316665 26316717 chr3R 26316761 26316811 8 79 3.0 3.0 3.0 2.0 146 chr3R 26316665 intergenic not near genes chr3R 26316738 intergenic not near genes chr3R 26316811 intergenic not near genes chr3R_8_26315001 chr3R_26315001 RAL-443 2641 chr3R 26332876 26332892 chr3R 26332973 26333001 10 105 10.0 5.0 7.5 1.2 125 chr3R 26332876 intron CG33970 + chr3R 26332938 intron CG33970 + chr3R 26333001 intron CG33970 + chr3R_10_26330001 chr3R_26330001 RAL-443 2642 chr3R 26332895 26332917 chr3R 26332972 26333026 11 102 5.5 3.5 4.5 2.0 131 chr3R 26332895 intron CG33970 + chr3R 26332960 intron CG33970 + chr3R 26333026 intron CG33970 + chr3R_11_26330001 chr3R_26330001 RAL-443 2643 chr3R 26340359 26340396 chr3R 26340493 26340505 4 132 5.0 4.5 4.8 0.7 146 chr3R 26340359 intron CG33970 + chr3R 26340432 intron CG33970 + chr3R 26340505 intron CG33970 + chr3R_4_26340001 chr3R_26340001 RAL-443 2644 chr3R 26349245 26349265 chr3R 26349361 26349381 4 114 6.5 0.0 3.2 1.0 136 chr3R 26349245 intron CG33970 + chr3R 26349313 intron CG33970 + chr3R 26349381 intron CG33970 + chr3R_4_26345001 chr3R_26345001 RAL-443 2645 chr3R 26365090 26365136 chr3R 26365195 26365240 12 104 6.5 4.5 5.5 1.8 150 chr3R 26365090 intergenic not near genes chr3R 26365165 intergenic not near genes chr3R 26365240 intergenic not near genes chr3R_12_26365001 chr3R_26365001 RAL-443 2646 chr3R 26376307 26376356 chr3R 26385487 26385525 roo 13 9172 5.0 13.5 9.2 1.3 9218 chr3R 26376307 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385525 intergenic not near genes chr3R_13_26380001 chr3R_26380001 RAL-443 2647 chr3R 26405899 26405940 chr3R 26405995 26406031 16 93 5.5 5.5 5.5 2.5 132 chr3R 26405899 intergenic not near genes chr3R 26405965 intergenic not near genes chr3R 26406031 intergenic not near genes chr3R_16_26405001 chr3R_26405001 RAL-443 2648 chr3R 26510486 26510495 chr3R 26519566 26519576 roo 6 9081 10.0 4.5 7.2 0.7 9090 chr3R 26510486 intron plum - chr3R 26515031 intron plum - chr3R 26519576 intron plum - chr3R_6_26515001 chr3R_26515001 RAL-443 2649 chr3R 26510500 26510529 chr3R 26519565 26519602 roo 12 9077 6.5 4.5 5.5 1.8 9102 chr3R 26510500 intron plum - chr3R 26515051 intron plum - chr3R 26519602 intron,5` UTR plum -,CR45226 + chr3R_12_26515001 chr3R_26515001 RAL-443 2650 chr3R 26510530 26510535 chr3R 26519561 26519614 roo 6 9059 6.0 4.0 5.0 1.0 9084 chr3R 26510530 intron plum - chr3R 26515072 intron plum - chr3R 26519614 intron,5` UTR plum -,CR45226 + chr3R_6_26515001 chr3R_26515001 RAL-443 2651 chr3R 26542043 26542065 chr3R 26542154 26542175 4 111 6.0 5.0 5.5 0.6 132 chr3R 26542043 intron scrib + chr3R 26542109 intron scrib + chr3R 26542175 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-443 2652 chr3R 26558310 26558353 chr3R 26565642 26565660 Stalker4 5 7327 3.0 4.0 3.5 1.1 7350 chr3R 26558310 intron scrib + chr3R 26561985 intron scrib + chr3R 26565660 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-443 2653 chr3R 26574991 26575038 chr3R 26575090 26575137 10 96 1.0 1.5 1.2 4.5 146 chr3R 26574991 exon scrib + chr3R 26575064 intron scrib + chr3R 26575137 intron scrib + chr3R_10_26575001 chr3R_26575001 RAL-443 2654 chr3R 26607757 26607774 chr3R 26607816 26607855 4 83 5.0 3.5 4.2 0.8 98 chr3R 26607757 5` UTR CR44951 + chr3R 26607806 5` UTR CR44951 + chr3R 26607855 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-443 2655 chr3R 26641620 26641645 chr3R 26641727 26641739 7 101 9.5 6.5 8.0 0.8 119 chr3R 26641620 intergenic not near genes chr3R 26641680 intergenic not near genes chr3R 26641739 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-443 2656 chr3R 26642711 26642756 chr3R 26643124 26643170 jockey 16 410 10.5 4.5 7.5 1.9 459 chr3R 26642711 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643170 intergenic not near genes chr3R_16_26640001 chr3R_26640001 RAL-443 2657 chr3R 26651524 26651546 chr3R 26651614 26651648 8 97 2.0 2.0 2.0 2.7 124 chr3R 26651524 intron beat-VII - chr3R 26651586 intron beat-VII - chr3R 26651648 intron beat-VII - chr3R_8_26650001 chr3R_26650001 RAL-443 2658 chr3R 26688843 26688863 chr3R 26688941 26688961 10 98 0.5 4.5 2.5 2.9 118 chr3R 26688843 intergenic not near genes chr3R 26688902 intergenic not near genes chr3R 26688961 intergenic not near genes chr3R_10_26685001 chr3R_26685001 RAL-443 2659 chr3R 26770220 26770274 chr3R 26770317 26770371 23 93 5.0 9.0 7.0 2.9 151 chr3R 26770220 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770371 intergenic not near genes chr3R_23_26770001 chr3R_26770001 RAL-443 2660 chr3R 26810531 26810582 chr3R 26811036 26811040 roo 16 501 4.0 4.5 4.2 3.1 509 chr3R 26810531 intron Tl + chr3R 26810786 intron Tl + chr3R 26811040 intron Tl + chr3R_16_26810001 chr3R_26810001 RAL-443 2661 chr3R 26819728 26819755 chr3R 26819826 26819852 6 98 4.5 3.0 3.8 1.2 124 chr3R 26819728 intron Tl + chr3R 26819790 intron Tl + chr3R 26819852 intron Tl + chr3R_6_26815001 chr3R_26815001 RAL-443 2662 chr3R 26825040 26825088 chr3R 26825136 26825159 21 94 6.5 4.0 5.2 3.4 119 chr3R 26825040 intron Tl + chr3R 26825100 intron Tl + chr3R 26825159 intron Tl + chr3R_21_26825001 chr3R_26825001 RAL-443 2663 chr3R 26827342 26827392 chr3R 26827440 26827490 10 92 3.0 4.5 3.8 2.1 148 chr3R 26827342 intron Tl + chr3R 26827416 intron Tl + chr3R 26827490 intron Tl + chr3R_10_26825001 chr3R_26825001 RAL-443 2664 chr3R 26845571 26845601 chr3R 26845650 26845691 10 92 1.0 4.5 2.8 2.6 120 chr3R 26845571 intron Lerp - chr3R 26845631 intron Lerp - chr3R 26845691 intron Lerp - chr3R_10_26845001 chr3R_26845001 RAL-443 2665 chr3R 26917272 26917323 chr3R 26917375 26917426 14 100 3.5 5.0 4.2 2.7 154 chr3R 26917272 intron sda + chr3R 26917349 intron sda + chr3R 26917426 intron sda + chr3R_14_26915001 chr3R_26915001 RAL-443 2666 chr3R 26945380 26945435 chr3R 26945480 26945535 14 98 3.0 3.0 3.0 3.5 155 chr3R 26945380 intergenic sda +,CG14252 + chr3R 26945458 intergenic CG14252 +,sda + chr3R 26945535 5` UTR CG14252 + chr3R_14_26945001 chr3R_26945001 RAL-443 2667 chr3R 26960721 26960747 chr3R 26960830 26960830 4 98 3.0 3.0 3.0 1.0 109 chr3R 26960721 intergenic Tsp97E - chr3R 26960776 intergenic Tsp97E - chr3R 26960830 intergenic Tsp97E - chr3R_4_26960001 chr3R_26960001 RAL-443 2668 chr3R 27007387 27007434 chr3R 27016542 27016559 roo 18 9148 7.0 5.5 6.2 2.5 9172 chr3R 27007387 intron RYa-R + chr3R 27011973 intron RYa-R + chr3R 27016559 intron RYa-R + chr3R_18_27010001 chr3R_27010001 RAL-443 2669 chr3R 27027661 27027690 chr3R 27027765 27027787 6 102 10.0 3.5 6.8 0.8 126 chr3R 27027661 intron RYa-R + chr3R 27027724 intron RYa-R + chr3R 27027787 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-443 2670 chr3R 27027691 27027703 chr3R 27027764 27027805 6 97 7.5 3.5 5.5 0.9 114 chr3R 27027691 intron RYa-R + chr3R 27027748 intron RYa-R + chr3R 27027805 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-443 2671 chr3R 27028706 27028754 chr3R 27028805 27028853 15 99 3.5 5.5 4.5 2.7 147 chr3R 27028706 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028853 intron RYa-R + chr3R_15_27025001 chr3R_27025001 RAL-443 2672 chr3R 27030312 27030336 chr3R 27030606 27030644 9 301 3.0 2.5 2.8 2.4 332 chr3R 27030312 intron RYa-R + chr3R 27030478 intron RYa-R + chr3R 27030644 intron RYa-R + chr3R_9_27030001 chr3R_27030001 RAL-443 2673 chr3R 27051640 27051695 chr3R 27051751 27051774 11 103 4.0 0.0 2.0 3.7 134 chr3R 27051640 intron RYa-R + chr3R 27051707 intron RYa-R + chr3R 27051774 intron RYa-R + chr3R_11_27050001 chr3R_27050001 RAL-443 2674 chr3R 27140494 27140548 chr3R 27148124 27148178 412 13 7625 4.0 4.5 4.2 2.5 7684 chr3R 27140494 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148178 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-443 2675 chr3R 27218715 27218735 chr3R 27218807 27218845 8 101 1.5 3.0 2.2 2.5 130 chr3R 27218715 intergenic not near genes chr3R 27218780 intergenic not near genes chr3R 27218845 intergenic not near genes chr3R_8_27215001 chr3R_27215001 RAL-443 2676 chr3R 27221229 27221252 chr3R 27221339 27221362 9 109 7.5 4.5 6.0 1.3 133 chr3R 27221229 intergenic not near genes chr3R 27221296 intergenic not near genes chr3R 27221362 intergenic not near genes chr3R_9_27220001 chr3R_27220001 RAL-443 2677 chr3R 27315975 27316013 chr3R 27316070 27316109 14 88 3.5 1.5 2.5 4.0 134 chr3R 27315975 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316109 exon CG3339 - chr3R_14_27315001 chr3R_27315001 RAL-443 2678 chr3R 27329468 27329501 chr3R 27329565 27329598 17 95 2.5 7.0 4.8 2.9 130 chr3R 27329468 intergenic CG3330 - chr3R 27329533 intergenic CG3330 - chr3R 27329598 intergenic CG3330 - chr3R_17_27325001 chr3R_27325001 RAL-443 2679 chr3R 27342778 27342789 chr3R 27351379 27351384 Tirant 4 8600 9.5 5.0 7.2 0.5 8606 chr3R 27342778 intron CG42534 + chr3R 27347081 intron CG42534 + chr3R 27351384 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-443 2680 chr3R 27342790 27342823 chr3R 27351376 27351424 Tirant 16 8597 2.0 4.0 3.0 4.0 8634 chr3R 27342790 intron CG42534 + chr3R 27347107 intron CG42534 + chr3R 27351424 intron CG42534 + chr3R_16_27345001 chr3R_27345001 RAL-443 2681 chr3R 27420595 27420637 chr3R 27420752 27420757 9 151 5.0 10.0 7.5 1.1 162 chr3R 27420595 intron side - chr3R 27420676 intron side - chr3R 27420757 intron side - chr3R_9_27420001 chr3R_27420001 RAL-443 2682 chr3R 27420638 27420640 chr3R 27420748 27420785 6 131 4.0 8.5 6.2 0.8 147 chr3R 27420638 intron side - chr3R 27420712 intron side - chr3R 27420785 intron side - chr3R_6_27420001 chr3R_27420001 RAL-443 2683 chr3R 27441821 27441835 chr3R 27443711 27443727 5 1891 11.0 34.5 22.8 0.2 1906 chr3R 27441821 intergenic not near genes chr3R 27442774 intergenic not near genes chr3R 27443727 intergenic not near genes chr3R_5_27440001 chr3R_27440001 RAL-443 2684 chr3R 27441818 27441862 chr3R 27443729 27443752 8 1896 13.5 32.0 22.8 0.3 1934 chr3R 27441818 intergenic not near genes chr3R 27442785 intergenic not near genes chr3R 27443752 intergenic not near genes chr3R_8_27440001 chr3R_27440001 RAL-443 2685 chr3R 27468959 27469009 chr3R 27469124 27469171 6 164 10.5 5.5 8.0 0.7 212 chr3R 27468959 intergenic not near genes chr3R 27469065 intergenic not near genes chr3R 27469171 intergenic not near genes chr3R_6_27465001 chr3R_27465001 RAL-443 2686 chr3R 27492358 27492399 chr3R 27492465 27492506 16 102 7.0 1.0 4.0 3.2 148 chr3R 27492358 intergenic not near genes chr3R 27492432 intergenic not near genes chr3R 27492506 intergenic not near genes chr3R_16_27490001 chr3R_27490001 RAL-443 2687 chr3R 27496573 27496602 chr3R 27496698 27496727 7 124 9.5 6.5 8.0 0.8 154 chr3R 27496573 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496727 intergenic not near genes chr3R_7_27495001 chr3R_27495001 RAL-443 2688 chr3R 27508028 27508068 chr3R 27508150 27508191 16 121 5.0 9.0 7.0 2.0 163 chr3R 27508028 intergenic not near genes chr3R 27508110 intergenic not near genes chr3R 27508191 intergenic not near genes chr3R_16_27505001 chr3R_27505001 RAL-443 2689 chr3R 27521153 27521184 chr3R 27530369 27530413 roo 12 9227 13.0 6.5 9.8 1.1 9260 chr3R 27521153 intron CG12885 + chr3R 27525783 intron CG12885 + chr3R 27530413 intron CG12885 + chr3R_12_27525001 chr3R_27525001 RAL-443 2690 chr3R 27573473 27573520 chr3R 27573626 27573673 23 149 5.0 6.0 5.5 3.5 200 chr3R 27573473 intron wdb - chr3R 27573573 intron wdb - chr3R 27573673 intron wdb - chr3R_23_27570001 chr3R_27570001 RAL-443 2691 chr3R 27578465 27578511 chr3R 27578570 27578607 10 100 2.5 3.0 2.8 2.6 142 chr3R 27578465 intron wdb - chr3R 27578536 intron wdb - chr3R 27578607 intron wdb - chr3R_10_27575001 chr3R_27575001 RAL-443 2692 chr3R 27624655 27624684 chr3R 27624763 27624769 4 106 4.0 6.5 5.2 0.6 114 chr3R 27624655 intron,intron Tusp +,CG5612 - chr3R 27624712 intron,intron Tusp +,CG5612 - chr3R 27624769 intron,intron Tusp +,CG5612 - chr3R_4_27620001 chr3R_27620001 RAL-443 2693 chr3R 27705358 27705391 chr3R 27705451 27705451 4 82 1.0 2.0 1.5 1.6 93 chr3R 27705358 exon CG12428 - chr3R 27705404 intron CG12428 - chr3R 27705451 intron CG12428 - chr3R_4_27705001 chr3R_27705001 RAL-443 2694 chr3R 27718563 27718589 chr3R 27718662 27718688 11 97 4.5 2.0 3.2 2.6 125 chr3R 27718563 intergenic not near genes chr3R 27718626 intergenic not near genes chr3R 27718688 intergenic not near genes chr3R_11_27715001 chr3R_27715001 RAL-443 2695 chr3R 27725557 27725584 chr3R 27731009 27731046 I-element 11 5461 6.5 4.5 5.5 1.7 5489 chr3R 27725557 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731046 intergenic not near genes chr3R_11_27725001 chr3R_27725001 RAL-443 2696 chr3R 27779261 27779287 chr3R 27779358 27779384 8 97 0.5 7.0 3.8 1.7 123 chr3R 27779261 exon CG34353 - chr3R 27779322 intron CG34353 - chr3R 27779384 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-443 2697 chr3R 27799917 27799963 chr3R 27800019 27800065 17 101 4.0 7.0 5.5 2.6 148 chr3R 27799917 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800065 intron CG34353 - chr3R_17_27795001 chr3R_27795001 RAL-443 2698 chr3R 27862937 27862950 chr3R 27868262 27868263 Transpac 7 5322 7.0 5.0 6.0 1.0 5326 chr3R 27862937 intron CG34353 - chr3R 27865600 intron CG34353 - chr3R 27868263 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-443 2699 chr3R 27862951 27862982 chr3R 27868261 27868307 Transpac 9 5304 3.5 5.0 4.2 1.7 5356 chr3R 27862951 intron CG34353 - chr3R 27865629 intron CG34353 - chr3R 27868307 intron CG34353 - chr3R_9_27865001 chr3R_27865001 RAL-443 2700 chr3R 27875685 27875732 chr3R 27882760 27882778 297 16 7072 7.5 9.0 8.2 1.7 7093 chr3R 27875685 intron CG34353 - chr3R 27879232 intron CG34353 - chr3R 27882778 intron CG34353 - chr3R_16_27875001 chr3R_27875001 RAL-443 2701 chr3R 28054425 28054469 chr3R 28054521 28054565 11 89 5.5 5.0 5.2 1.8 140 chr3R 28054425 intron CG34362 + chr3R 28054495 intron CG34362 + chr3R 28054565 intron CG34362 + chr3R_11_28050001 chr3R_28050001 RAL-443 2702 chr3R 28068475 28068525 chr3R 28073937 28073967 I-element 8 5458 0.5 3.0 1.8 2.9 5492 chr3R 28068475 intron CG34362 + chr3R 28071221 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-443 2703 chr3R 28103311 28103349 chr3R 28103424 28103448 7 110 1.0 0.0 0.5 4.7 137 chr3R 28103311 intergenic not near genes chr3R 28103380 intergenic not near genes chr3R 28103448 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-443 2704 chr3R 28152342 28152363 chr3R 28152426 28152460 10 94 6.0 5.0 5.5 1.5 118 chr3R 28152342 intron CG34354 + chr3R 28152401 intron CG34354 + chr3R 28152460 intron CG34354 + chr3R_10_28150001 chr3R_28150001 RAL-443 2705 chr3R 28164871 28164877 chr3R 28164969 28164970 4 97 12.5 0.0 6.2 0.6 99 chr3R 28164871 intron CG34354 + chr3R 28164920 intron CG34354 + chr3R 28164970 intron CG34354 + chr3R_4_28160001 chr3R_28160001 RAL-443 2706 chr3R 28173651 28173702 chr3R 28181101 28181152 mdg1 12 7449 1.0 2.5 1.8 4.3 7501 chr3R 28173651 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181152 intron CG34354 + chr3R_12_28175001 chr3R_28175001 RAL-443 2707 chr3R 28253334 28253366 chr3R 28255848 28255896 jockey 12 2523 3.0 5.0 4.0 2.4 2562 chr3R 28253334 intergenic not near genes chr3R 28254615 intergenic not near genes chr3R 28255896 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-443 2708 chr3R 28297955 28298005 chr3R 28298051 28298058 4 84 2.5 1.5 2.0 1.3 103 chr3R 28297955 intergenic not near genes chr3R 28298006 intergenic not near genes chr3R 28298058 intergenic not near genes chr3R_4_28295001 chr3R_28295001 RAL-443 2709 chr3R 28302092 28302117 chr3R 28302554 28302579 jockey 9 461 10.0 10.5 10.2 0.8 487 chr3R 28302092 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302579 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-443 2710 chr3R 28331489 28331525 chr3R 28331587 28331604 12 97 2.5 4.5 3.5 2.7 115 chr3R 28331489 intron larp - chr3R 28331546 intron larp - chr3R 28331604 intron larp - chr3R_12_28330001 chr3R_28330001 RAL-443 2711 chr3R 28407700 28407734 chr3R 28407806 28407807 6 100 2.5 5.5 4.0 1.2 107 chr3R 28407700 intergenic not near genes chr3R 28407754 intergenic not near genes chr3R 28407807 intergenic not near genes chr3R_6_28405001 chr3R_28405001 RAL-443 2712 chr3R 28465276 28465328 chr3R 28465413 28465465 18 134 5.0 8.0 6.5 2.4 189 chr3R 28465276 intron beat-VI + chr3R 28465370 intron beat-VI + chr3R 28465465 intron beat-VI + chr3R_18_28465001 chr3R_28465001 RAL-443 2713 chr3R 28479146 28479165 chr3R 28479232 28479257 11 98 3.5 3.5 3.5 2.4 111 chr3R 28479146 intergenic not near genes chr3R 28479202 intergenic not near genes chr3R 28479257 intergenic not near genes chr3R_11_28475001 chr3R_28475001 RAL-443 2714 chr3R 28480309 28480327 chr3R 28480409 28480428 7 101 2.0 8.0 5.0 1.2 119 chr3R 28480309 intergenic not near genes chr3R 28480368 intergenic not near genes chr3R 28480428 intergenic not near genes chr3R_7_28480001 chr3R_28480001 RAL-443 2715 chr3R 28484353 28484394 chr3R 28486250 28486291 46 1901 93.0 104.0 98.5 0.5 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_46_28485001 chr3R_28485001 RAL-443 2716 chr3R 28597474 28597519 chr3R 28597571 28597605 6 95 2.5 1.5 2.0 2.0 131 chr3R 28597474 intergenic not near genes chr3R 28597540 intergenic not near genes chr3R 28597605 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-443 2717 chr3R 28616458 28616464 chr3R 28616572 28616578 5 114 15.5 7.0 11.2 0.4 120 chr3R 28616458 intron CG10011 - chr3R 28616518 intron CG10011 - chr3R 28616578 intron CG10011 - chr3R_5_28615001 chr3R_28615001 RAL-443 2718 chr3R 28616467 28616475 chr3R 28616570 28616589 6 110 13.5 6.5 10.0 0.5 122 chr3R 28616467 intron CG10011 - chr3R 28616528 intron CG10011 - chr3R 28616589 intron CG10011 - chr3R_6_28615001 chr3R_28615001 RAL-443 2719 chr3R 28616478 28616501 chr3R 28616568 28616615 15 106 7.5 6.0 6.8 1.9 137 chr3R 28616478 intron CG10011 - chr3R 28616546 intron CG10011 - chr3R 28616615 intron CG10011 - chr3R_15_28615001 chr3R_28615001 RAL-443 2720 chr3R 28648967 28648992 chr3R 28649336 28649367 6 371 5.5 5.5 5.5 0.9 400 chr3R 28648967 intergenic not near genes chr3R 28649167 intergenic not near genes chr3R 28649367 intergenic not near genes chr3R_6_28645001 chr3R_28645001 RAL-443 2721 chr3R 28744594 28744612 chr3R 28744726 28744732 12 130 5.0 3.5 4.2 2.3 138 chr3R 28744594 5` UTR AstA-R2 - chr3R 28744663 5` UTR AstA-R2 - chr3R 28744732 5` UTR AstA-R2 - chr3R_12_28740001 chr3R_28740001 RAL-443 2722 chr3R 28758264 28758282 chr3R 28763901 28763919 roo 9 5637 13.5 0.0 6.8 1.2 5655 chr3R 28758264 intergenic aqrs - chr3R 28761092 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_9_28760001 chr3R_28760001 RAL-443 2723 chr3R 28763900 28763917 chr3R 28771363 28771370 Stalker4 5 7461 0.0 7.5 3.8 1.0 7470 chr3R 28763900 intergenic not near genes chr3R 28767635 intergenic not near genes chr3R 28771370 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-443 2724 chr3R 28792851 28792896 chr3R 28797966 28797984 jockey 8 5101 1.5 2.5 2.0 2.7 5133 chr3R 28792851 intergenic not near genes chr3R 28795418 intergenic not near genes chr3R 28797984 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-443 2725 chr3R 28800250 28800300 chr3R 28800349 28800382 15 94 5.0 2.5 3.8 3.1 132 chr3R 28800250 intergenic not near genes chr3R 28800316 intergenic not near genes chr3R 28800382 intergenic not near genes chr3R_15_28800001 chr3R_28800001 RAL-443 2726 chr3R 28811552 28811599 chr3R 28811718 28811765 20 164 7.0 4.0 5.5 3.1 213 chr3R 28811552 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811765 intergenic CG1646 +,wdn - chr3R_20_28810001 chr3R_28810001 RAL-443 2727 chr3R 28823097 28823128 chr3R 28823188 28823225 15 87 10.5 6.0 8.2 1.6 128 chr3R 28823097 exon CG1647 + chr3R 28823161 exon CG1647 + chr3R 28823225 exon CG1647 + chr3R_15_28820001 chr3R_28820001 RAL-443 2728 chr3R 28823133 28823139 chr3R 28823185 28823228 4 76 7.0 5.0 6.0 0.6 95 chr3R 28823133 exon CG1647 + chr3R 28823180 exon CG1647 + chr3R 28823228 exon CG1647 + chr3R_4_28820001 chr3R_28820001 RAL-443 2729 chr3R 21907534 21907536 chr3R 28831799 28831802 20 6924266 25.0 8.0 16.5 1.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-443 2730 chr3R 28960493 28960540 chr3R 28960598 28960645 15 101 3.0 5.0 4.0 3.0 152 chr3R 28960493 intron CG14521 - chr3R 28960569 intron CG14521 - chr3R 28960645 intron CG14521 - chr3R_15_28960001 chr3R_28960001 RAL-443 2731 chr3R 28985050 28985092 chr3R 28985172 28985174 11 119 3.5 2.5 3.0 2.8 124 chr3R 28985050 intergenic not near genes chr3R 28985112 intergenic not near genes chr3R 28985174 intergenic not near genes chr3R_11_28985001 chr3R_28985001 RAL-443 2732 chr3R 28988984 28989019 chr3R 28989083 28989118 12 99 0.0 7.0 3.5 2.7 134 chr3R 28988984 intergenic not near genes chr3R 28989051 intergenic not near genes chr3R 28989118 intergenic not near genes chr3R_12_28985001 chr3R_28985001 RAL-443 2733 chr3R 29011958 29011968 chr3R 29012087 29012100 5 131 9.0 0.0 4.5 0.9 142 chr3R 29011958 intron wat - chr3R 29012029 intron wat - chr3R 29012100 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-443 2734 chr3R 29011970 29011986 chr3R 29012077 29012098 5 117 6.5 0.0 3.2 1.2 128 chr3R 29011970 intron wat - chr3R 29012034 intron wat - chr3R 29012098 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-443 2735 chr3R 29032728 29032775 chr3R 29032825 29032834 8 87 6.5 2.5 4.5 1.5 106 chr3R 29032728 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032781 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032834 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_8_29030001 chr3R_29030001 RAL-443 2736 chr3R 29054010 29054050 chr3R 29054105 29054146 10 89 7.0 5.5 6.2 1.4 136 chr3R 29054010 intergenic CG11842 +,CG11843 + chr3R 29054078 intergenic CG11842 +,CG11843 + chr3R 29054146 intergenic CG11843 +,CG11842 + chr3R_10_29050001 chr3R_29050001 RAL-443 2737 chr3R 29070037 29070053 chr3R 29070138 29070144 7 100 11.0 9.0 10.0 0.6 107 chr3R 29070037 intron CG11873 + chr3R 29070090 intron CG11873 + chr3R 29070144 intron CG11873 + chr3R_7_29070001 chr3R_29070001 RAL-443 2738 chr3R 29070054 29070078 chr3R 29070137 29070179 14 98 5.0 9.0 7.0 1.8 125 chr3R 29070054 intron CG11873 + chr3R 29070116 intron CG11873 + chr3R 29070179 intron CG11873 + chr3R_14_29070001 chr3R_29070001 RAL-443 2739 chr3R 29141530 29141579 chr3R 29141629 29141658 12 97 0.5 7.5 4.0 2.4 128 chr3R 29141530 intron CG14516 + chr3R 29141594 intron CG14516 + chr3R 29141658 intron CG14516 + chr3R_12_29140001 chr3R_29140001 RAL-443 2740 chr3R 29230831 29230860 chr3R 29230902 29230936 5 79 2.5 7.5 5.0 0.8 105 chr3R 29230831 intron CG15817 + chr3R 29230884 intron CG15817 + chr3R 29230936 intron CG15817 + chr3R_5_29230001 chr3R_29230001 RAL-443 2741 chr3R 29237261 29237285 chr3R 29239267 29239278 6 2018 9.0 5.0 7.0 0.8 2017 chr3R 29237261 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239278 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-443 2742 chr3R 29237916 29237965 chr3R 29238144 29238185 19 226 7.0 10.0 8.5 2.0 269 chr3R 29237916 exon CG11951 - chr3R 29238050 exon CG11951 - chr3R 29238185 intron CG11951 - chr3R_19_29235001 chr3R_29235001 RAL-443 2743 chr3R 29239218 29239246 chr3R 29245513 29245517 4 6296 5.0 12.0 8.5 0.4 6299 chr3R 29239218 exon CG31427 - chr3R 29242368 exon CG31445 - chr3R 29245517 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-443 2744 chr3R 29237522 29237529 chr3R 29239410 29239430 5 1891 22.5 17.5 20.0 0.2 1908 chr3R 29237522 exon CG11951 - chr3R 29238476 intron CG11951 - chr3R 29239430 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-443 2745 chr3R 29249887 29249917 chr3R 29249997 29250027 10 108 9.0 10.5 9.8 0.9 140 chr3R 29249887 intron SP1029 - chr3R 29249957 intron SP1029 - chr3R 29250027 intron SP1029 - chr3R_10_29245001 chr3R_29245001 RAL-443 2746 chr3R 29264192 29264213 chr3R 29264305 29264335 9 120 0.0 4.5 2.2 2.8 143 chr3R 29264192 intergenic not near genes chr3R 29264264 intergenic not near genes chr3R 29264335 intergenic not near genes chr3R_9_29260001 chr3R_29260001 RAL-443 2747 chr3R 29319813 29319861 chr3R 29320147 29320169 jockey 15 332 5.5 7.5 6.5 2.0 356 chr3R 29319813 intergenic Cnx99A - chr3R 29319991 intergenic Cnx99A - chr3R 29320169 intergenic not near genes chr3R_15_29315001 chr3R_29315001 RAL-443 2748 chr3R 29332278 29332382 chr3R 29332360 29332489 12 102 0.0 0.0 0.0 12.0 211 chr3R 29332278 intergenic not near genes chr3R 29332384 intergenic not near genes chr3R 29332489 intergenic not near genes chr3R_12_29330001 chr3R_29330001 RAL-443 2749 chr3R 29337843 29337871 chr3R 29337937 29337969 9 95 4.5 2.5 3.5 2.0 126 chr3R 29337843 intergenic not near genes chr3R 29337906 intergenic not near genes chr3R 29337969 intergenic not near genes chr3R_9_29335001 chr3R_29335001 RAL-443 2750 chr3R 29402981 29403006 chr3R 29403076 29403120 18 110 2.5 2.5 2.5 5.1 139 chr3R 29402981 intron Ptp99A + chr3R 29403050 intron Ptp99A + chr3R 29403120 intron Ptp99A + chr3R_18_29400001 chr3R_29400001 RAL-443 2751 chr3R 29406616 29406631 chr3R 29407912 29407937 jockey 5 1303 3.5 5.5 4.5 0.9 1321 chr3R 29406616 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407937 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-443 2752 chr3R 29406633 29406644 chr3R 29407907 29407935 jockey 5 1285 3.5 4.5 4.0 1.0 1302 chr3R 29406633 intron Ptp99A + chr3R 29407284 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-443 2753 chr3R 29412017 29412037 chr3R 29412100 29412106 4 80 2.5 4.5 3.5 0.9 89 chr3R 29412017 intron Ptp99A + chr3R 29412062 intron Ptp99A + chr3R 29412106 intron Ptp99A + chr3R_4_29410001 chr3R_29410001 RAL-443 2754 chr3R 29449338 29449388 chr3R 29449436 29449486 28 93 5.5 6.0 5.8 4.1 148 chr3R 29449338 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449486 intron Ptp99A + chr3R_28_29445001 chr3R_29445001 RAL-443 2755 chr3R 29452141 29452159 chr3R 29452238 29452243 5 92 6.5 7.0 6.8 0.6 102 chr3R 29452141 intron Ptp99A + chr3R 29452192 intron Ptp99A + chr3R 29452243 intron Ptp99A + chr3R_5_29450001 chr3R_29450001 RAL-443 2756 chr3R 29452182 29452187 chr3R 29452233 29452243 4 60 1.0 7.0 4.0 0.8 61 chr3R 29452182 intron Ptp99A + chr3R 29452212 intron Ptp99A + chr3R 29452243 intron Ptp99A + chr3R_4_29450001 chr3R_29450001 RAL-443 2757 chr3R 29468250 29468271 chr3R 29468741 29468762 7 489 9.5 3.0 6.2 1.0 512 chr3R 29468250 intron Ptp99A + chr3R 29468506 intron Ptp99A + chr3R 29468762 intron Ptp99A + chr3R_7_29465001 chr3R_29465001 RAL-443 2758 chr3R 29468287 29468297 chr3R 29468738 29468764 6 464 3.5 3.0 3.2 1.4 477 chr3R 29468287 intron Ptp99A + chr3R 29468526 intron Ptp99A + chr3R 29468764 intron Ptp99A + chr3R_6_29465001 chr3R_29465001 RAL-443 2759 chr3R 29472011 29472034 chr3R 29472124 29472134 7 108 2.5 9.0 5.8 1.0 123 chr3R 29472011 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472134 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-443 2760 chr3R 29481017 29481054 chr3R 29481160 29481198 10 140 2.0 7.0 4.5 1.8 181 chr3R 29481017 intron Ptp99A + chr3R 29481108 intron Ptp99A + chr3R 29481198 intron Ptp99A + chr3R_10_29480001 chr3R_29480001 RAL-443 2761 chr3R 29505873 29505924 chr3R 29505970 29506021 15 94 6.0 4.0 5.0 2.5 148 chr3R 29505873 intergenic not near genes chr3R 29505947 intergenic not near genes chr3R 29506021 intergenic not near genes chr3R_15_29505001 chr3R_29505001 RAL-443 2762 chr3R 29539427 29539447 chr3R 29539507 29539536 8 89 4.5 0.0 2.2 2.5 109 chr3R 29539427 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539536 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-443 2763 chr3R 29546733 29546783 chr3R 29546829 29546847 12 86 3.5 6.0 4.8 2.1 114 chr3R 29546733 intergenic not near genes chr3R 29546790 intergenic not near genes chr3R 29546847 intergenic not near genes chr3R_12_29545001 chr3R_29545001 RAL-443 2764 chr3R 29563980 29563993 chr3R 29564049 29564089 6 88 0.0 7.0 3.5 1.3 109 chr3R 29563980 intron Dr + chr3R 29564034 intron Dr + chr3R 29564089 intron Dr + chr3R_6_29560001 chr3R_29560001 RAL-443 2765 chr3R 29576758 29577008 chr3R 29576870 29577109 4 101 5.0 0.0 2.5 1.1 351 chr3R 29576758 intergenic not near genes chr3R 29576934 intergenic not near genes chr3R 29577109 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-443 2766 chr3R 29590358 29590404 chr3R 29590469 29590502 9 108 3.0 1.0 2.0 3.0 144 chr3R 29590358 exon CG31041 - chr3R 29590430 intron CG31041 - chr3R 29590502 intron CG31041 - chr3R_9_29590001 chr3R_29590001 RAL-443 2767 chr3R 29655636 29655684 chr3R 29655734 29655777 9 98 3.0 5.5 4.2 1.7 141 chr3R 29655636 intron Dop1R2 - chr3R 29655706 intron Dop1R2 - chr3R 29655777 intron Dop1R2 - chr3R_9_29655001 chr3R_29655001 RAL-443 2768 chr3R 29718131 29718177 chr3R 29718227 29718273 22 95 6.0 6.0 6.0 3.1 142 chr3R 29718131 intergenic not near genes chr3R 29718202 intergenic CG15506 + chr3R 29718273 intergenic CG15506 + chr3R_22_29715001 chr3R_29715001 RAL-443 2769 chr3R 29738245 29738295 chr3R 29739732 29739782 hobo 19 1480 3.5 4.0 3.8 4.0 1537 chr3R 29738245 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739782 5` UTR CG1969 + chr3R_19_29735001 chr3R_29735001 RAL-443 2770 chr3R 29758917 29758971 chr3R 29759015 29759069 16 93 6.0 8.5 7.2 2.0 152 chr3R 29758917 3` UTR CR44953 - chr3R 29758993 3` UTR CR44953 - chr3R 29759069 intergenic CR44953 - chr3R_16_29755001 chr3R_29755001 RAL-443 2771 chr3R 29760341 29760389 chr3R 29761562 29761610 pogo 22 1218 7.5 2.5 5.0 3.7 1269 chr3R 29760341 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761610 intergenic not near genes chr3R_22_29760001 chr3R_29760001 RAL-443 2772 chr3R 29773884 29773906 chr3R 29773968 29774007 8 106 5.0 0.5 2.8 2.1 123 chr3R 29773884 intron kay + chr3R 29773946 intron kay + chr3R 29774007 intron kay + chr3R_8_29770001 chr3R_29770001 RAL-443 2773 chr3R 29782246 29782296 chr3R 29782341 29782389 23 92 2.0 4.0 3.0 5.8 143 chr3R 29782246 intron kay + chr3R 29782318 intron kay + chr3R 29782389 intron kay + chr3R_23_29780001 chr3R_29780001 RAL-443 2774 chr3R 29831795 29831841 chr3R 29831900 29831902 8 98 4.0 1.5 2.8 2.1 107 chr3R 29831795 exon Atg16 - chr3R 29831848 intron Atg16 - chr3R 29831902 intron Atg16 - chr3R_8_29830001 chr3R_29830001 RAL-443 2775 chr3R 29882010 29882015 chr3R 29891176 29891191 roo 4 9174 15.0 5.5 10.2 0.4 9181 chr3R 29882010 intron CG31038 + chr3R 29886600 intron CG31038 + chr3R 29891191 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-443 2776 chr3R 29882018 29882052 chr3R 29891174 29891229 roo 15 9173 5.5 5.5 5.5 2.3 9211 chr3R 29882018 intron CG31038 + chr3R 29886624 intron CG31038 + chr3R 29891229 intron CG31038 + chr3R_15_29885001 chr3R_29885001 RAL-443 2777 chr3R 29923615 29923619 chr3R 29925442 29925459 6 1829 27.5 41.0 34.2 0.2 1844 chr3R 29923615 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924537 exon Jon99Cii - chr3R 29925459 exon Jon99Ci - chr3R_6_29920001 chr3R_29920001 RAL-443 2778 chr3R 29923614 29923661 chr3R 29925462 29925488 11 1831 29.5 36.0 32.8 0.3 1874 chr3R 29923614 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924551 exon Jon99Cii - chr3R 29925488 exon Jon99Ci - chr3R_11_29920001 chr3R_29920001 RAL-443 2779 chr3R 29968765 29968787 chr3R 29968944 29968991 9 200 2.0 3.5 2.8 2.4 226 chr3R 29968765 intron TkR99D - chr3R 29968878 intron TkR99D - chr3R 29968991 5` UTR TkR99D - chr3R_9_29965001 chr3R_29965001 RAL-443 2780 chr3R 29979961 29980006 chr3R 29980063 29980085 6 90 5.5 2.5 4.0 1.2 124 chr3R 29979961 intergenic not near genes chr3R 29980023 intergenic not near genes chr3R 29980085 intergenic not near genes chr3R_6_29980001 chr3R_29980001 RAL-443 2781 chr3R 30032141 30032187 chr3R 30032240 30032259 16 92 3.5 7.0 5.2 2.6 118 chr3R 30032141 intron Axn + chr3R 30032200 intron Axn + chr3R 30032259 intron Axn + chr3R_16_30030001 chr3R_30030001 RAL-443 2782 chr3R 30050299 30050315 chr3R 30050423 30050442 7 126 5.0 6.5 5.8 1.0 143 chr3R 30050299 intron,intron CG15528 -,CR44046 + chr3R 30050370 intron,intron CG15528 -,CR44046 + chr3R 30050442 intron,intron CG15528 -,CR44046 + chr3R_7_30050001 chr3R_30050001 RAL-443 2783 chr3R 30124940 30124979 chr3R 30125036 30125055 8 83 1.5 2.5 2.0 2.7 115 chr3R 30124940 intergenic CG45073 - chr3R 30124998 intergenic CG45073 - chr3R 30125055 intergenic CG45073 - chr3R_8_30125001 chr3R_30125001 RAL-443 2784 chr3R 30125420 30125468 chr3R 30125519 30125561 21 101 6.5 7.0 6.8 2.7 141 chr3R 30125420 intergenic Ppi1 - chr3R 30125490 intergenic Ppi1 - chr3R 30125561 intergenic Ppi1 - chr3R_21_30125001 chr3R_30125001 RAL-443 2785 chr3R 30162208 30162240 chr3R 30166869 30166901 9 4664 46.0 48.0 47.0 0.2 4693 chr3R 30162208 intergenic not near genes chr3R 30164554 intergenic CG31030 - chr3R 30166901 exon CG31028 - chr3R_9_30160001 chr3R_30160001 RAL-443 2786 chr3R 30177722 30177772 chr3R 30177859 30177880 6 131 5.0 2.0 3.5 1.3 158 chr3R 30177722 intergenic CG1983 -,CG15530 + chr3R 30177801 intergenic CG15530 +,CG1983 - chr3R 30177880 5` UTR CG15530 + chr3R_6_30175001 chr3R_30175001 RAL-443 2787 chr3R 30210594 30210673 chr3R 30210727 30210773 8 103 0.0 3.5 1.8 2.9 179 chr3R 30210594 intergenic Anp +,CecA1 + chr3R 30210684 intergenic CecA1 +,Anp + chr3R 30210773 intergenic CecA1 +,Anp + chr3R_8_30210001 chr3R_30210001 RAL-443 2788 chr3R 30238741 30238783 chr3R 30239925 30239968 1360 25 1183 8.0 0.5 4.2 4.8 1227 chr3R 30238741 intergenic not near genes chr3R 30239354 intergenic not near genes chr3R 30239968 intergenic not near genes chr3R_25_30235001 chr3R_30235001 RAL-443 2789 chr3R 30246309 30246333 chr3R 30246408 30246431 7 97 0.0 4.0 2.0 2.3 122 chr3R 30246309 intron CG9733 - chr3R 30246370 intron CG9733 - chr3R 30246431 intron CG9733 - chr3R_7_30245001 chr3R_30245001 RAL-443 2790 chr3R 30260347 30260396 chr3R 30260443 30260492 17 93 5.5 6.0 5.8 2.5 145 chr3R 30260347 intergenic not near genes chr3R 30260420 intergenic not near genes chr3R 30260492 intergenic not near genes chr3R_17_30260001 chr3R_30260001 RAL-443 2791 chr3R 30300722 30300743 chr3R 30300823 30300823 8 98 2.5 10.5 6.5 1.1 101 chr3R 30300722 intron hdc + chr3R 30300772 intron hdc + chr3R 30300823 intron hdc + chr3R_8_30300001 chr3R_30300001 RAL-443 2792 chr3R 30317330 30317340 chr3R 30324933 30324952 roo 6 7610 0.5 5.5 3.0 1.5 7622 chr3R 30317330 intron hdc + chr3R 30321141 intron hdc + chr3R 30324952 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-443 2793 chr3R 30339535 30339567 chr3R 30339864 30339896 19 326 5.5 3.5 4.5 3.5 361 chr3R 30339535 intron hdc + chr3R 30339716 intron hdc + chr3R 30339896 intron hdc + chr3R_19_30335001 chr3R_30335001 RAL-443 2794 chr3R 30354739 30354751 chr3R 30354813 30354856 4 97 7.5 4.5 6.0 0.6 117 chr3R 30354739 intron hdc + chr3R 30354798 intron hdc + chr3R 30354856 intron hdc + chr3R_4_30350001 chr3R_30350001 RAL-443 2795 chr3R 30359351 30359382 chr3R 30359498 30359527 6 148 1.5 5.5 3.5 1.3 176 chr3R 30359351 intron hdc + chr3R 30359439 intron hdc + chr3R 30359527 intron hdc + chr3R_6_30355001 chr3R_30355001 RAL-443 2796 chr3R 30396205 30396239 chr3R 30404490 30404525 roo 13 8284 7.5 4.5 6.0 1.9 8320 chr3R 30396205 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404525 5` UTR CR45570 + chr3R_13_30400001 chr3R_30400001 RAL-443 2797 chr3R 30480483 30480510 chr3R 30482943 30482965 jockey 13 2469 2.5 4.5 3.5 2.9 2482 chr3R 30480483 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482965 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-443 2798 chr3R 30488102 30488123 chr3R 30488201 30488215 10 95 2.5 0.0 1.2 4.5 113 chr3R 30488102 intergenic Jon99Fii - chr3R 30488158 intergenic Jon99Fii - chr3R 30488215 intergenic Jon99Fii - chr3R_10_30485001 chr3R_30485001 RAL-443 2799 chr3R 30498402 30498429 chr3R 30498606 30498649 11 215 0.5 6.0 3.2 2.6 247 chr3R 30498402 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498649 intron PH4alphaNE1 - chr3R_11_30495001 chr3R_30495001 RAL-443 2800 chr3R 30539702 30539730 chr3R 30540367 30540379 13 660 0.0 9.0 4.5 2.4 677 chr3R 30539702 intron tmod + chr3R 30540040 intron tmod + chr3R 30540379 intron tmod + chr3R_13_30540001 chr3R_30540001 RAL-443 2801 chr3R 30548997 30549008 chr3R 30549109 30549120 7 110 11.0 3.0 7.0 0.9 123 chr3R 30548997 intron tmod + chr3R 30549058 intron tmod + chr3R 30549120 intron tmod + chr3R_7_30545001 chr3R_30545001 RAL-443 2802 chr3R 30549010 30549036 chr3R 30549102 30549148 13 107 4.5 2.0 3.2 3.1 138 chr3R 30549010 intron tmod + chr3R 30549079 intron tmod + chr3R 30549148 intron tmod + chr3R_13_30545001 chr3R_30545001 RAL-443 2803 chr3R 30568315 30568357 chr3R 30568442 30568486 6 124 3.5 3.5 3.5 1.3 171 chr3R 30568315 intron tmod + chr3R 30568400 intron tmod + chr3R 30568486 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-443 2804 chr3R 30571683 30571717 chr3R 30571783 30571786 10 94 3.5 0.5 2.0 3.3 103 chr3R 30571683 intron tmod + chr3R 30571734 intron tmod + chr3R 30571786 intron tmod + chr3R_10_30570001 chr3R_30570001 RAL-443 2805 chr3R 30577313 30577336 chr3R 30577411 30577432 9 98 7.0 13.0 10.0 0.8 119 chr3R 30577313 3` UTR tmod + chr3R 30577372 3` UTR tmod + chr3R 30577432 3` UTR tmod + chr3R_9_30575001 chr3R_30575001 RAL-443 2806 chr3R 30578134 30578161 chr3R 30578231 30578238 4 90 8.5 11.0 9.8 0.4 104 chr3R 30578134 3` UTR tmod + chr3R 30578186 3` UTR tmod + chr3R 30578238 3` UTR tmod + chr3R_4_30575001 chr3R_30575001 RAL-443 2807 chr3R 30578164 30578178 chr3R 30578225 30578260 11 88 4.5 8.0 6.2 1.5 96 chr3R 30578164 3` UTR tmod + chr3R 30578212 3` UTR tmod + chr3R 30578260 3` UTR tmod + chr3R_11_30575001 chr3R_30575001 RAL-443 2808 chr3R 30627606 30627639 chr3R 30627684 30627709 12 81 5.5 5.0 5.2 1.9 103 chr3R 30627606 exon CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627709 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-443 2809 chr3R 30664774 30664802 chr3R 30664889 30664917 4 114 4.0 0.0 2.0 1.3 143 chr3R 30664774 intergenic CR45191 + chr3R 30664846 5` UTR CR45191 + chr3R 30664917 5` UTR CR45191 + chr3R_4_30660001 chr3R_30660001 RAL-443 2810 chr3R 30679504 30679551 chr3R 30686993 30687022 blood 11 7486 3.5 7.5 5.5 1.7 7518 chr3R 30679504 intergenic not near genes chr3R 30683263 intergenic not near genes chr3R 30687022 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-443 2811 chr3R 30700853 30700873 chr3R 30700995 30701016 6 143 4.5 1.0 2.8 1.6 163 chr3R 30700853 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701016 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-443 2812 chr3R 30800384 30800435 chr3R 30800490 30800541 22 99 2.0 3.0 2.5 6.3 157 chr3R 30800384 5` UTR wts - chr3R 30800462 5` UTR wts - chr3R 30800541 5` UTR wts - chr3R_22_30800001 chr3R_30800001 RAL-443 2813 chr3R 30818795 30818842 chr3R 30820380 30820427 1360 19 1582 7.5 6.5 7.0 2.4 1632 chr3R 30818795 intron cindr + chr3R 30819611 intron cindr + chr3R 30820427 intron cindr + chr3R_19_30815001 chr3R_30815001 RAL-443 2814 chr3R 30823392 30823416 chr3R 30823508 30823532 7 114 1.5 7.5 4.5 1.3 140 chr3R 30823392 intron cindr + chr3R 30823462 intron cindr + chr3R 30823532 intron cindr + chr3R_7_30820001 chr3R_30820001 RAL-443 2815 chr3R 30850220 30850267 chr3R 30850332 30850379 20 110 7.5 9.0 8.2 2.2 159 chr3R 30850220 intergenic not near genes chr3R 30850300 intergenic not near genes chr3R 30850379 intergenic not near genes chr3R_20_30850001 chr3R_30850001 RAL-443 2816 chr3R 30888921 30888965 chr3R 30893428 30893477 24 4510 39.5 47.5 43.5 0.5 4556 chr3R 30888921 exon Sap-r - chr3R 30891199 intergenic not near genes chr3R 30893477 intergenic not near genes chr3R_24_30890001 chr3R_30890001 RAL-443 2817 chr3R 30900525 30900552 chr3R 30900606 30900652 6 92 4.5 8.0 6.2 0.8 127 chr3R 30900525 3` UTR Cyp4c3 + chr3R 30900588 3` UTR Cyp4c3 + chr3R 30900652 3` UTR Cyp4c3 + chr3R_6_30900001 chr3R_30900001 RAL-443 2818 chr3R 31042102 31042139 chr3R 31042198 31042239 10 101 6.0 3.5 4.8 1.7 137 chr3R 31042102 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042239 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-443 2819 chr3R 31069623 31069677 chr3R 31069738 31069786 17 111 4.0 1.5 2.8 4.5 163 chr3R 31069623 intron Sox100B + chr3R 31069704 intron Sox100B + chr3R 31069786 intron Sox100B + chr3R_17_31065001 chr3R_31065001 RAL-443 2820 chr3R 31074215 31074252 chr3R 31081833 31081870 springer 5 7618 4.0 2.5 3.2 1.2 7655 chr3R 31074215 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081870 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-443 2821 chr3R 31090606 31090651 chr3R 31090706 31090745 13 100 2.5 5.0 3.8 2.7 139 chr3R 31090606 intergenic CG11317 - chr3R 31090676 intergenic CG11317 - chr3R 31090745 3` UTR CG11317 - chr3R_13_31090001 chr3R_31090001 RAL-443 2822 chr3R 31279366 31279370 chr3R 31285567 31285581 diver 4 6203 9.5 3.5 6.5 0.5 6215 chr3R 31279366 intergenic not near genes chr3R 31282474 intergenic not near genes chr3R 31285581 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-443 2823 chr3R 31279379 31279407 chr3R 31285563 31285607 diver 8 6204 1.5 3.5 2.5 2.3 6228 chr3R 31279379 intergenic not near genes chr3R 31282493 intergenic not near genes chr3R 31285607 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-443 2824 chr3R 31320143 31320174 chr3R 31320257 31320289 12 113 10.5 6.0 8.2 1.3 146 chr3R 31320143 intron CG34347 + chr3R 31320216 intron CG34347 + chr3R 31320289 intron CG34347 + chr3R_12_31320001 chr3R_31320001 RAL-443 2825 chr3R 31320178 31320194 chr3R 31320256 31320280 8 104 4.0 6.0 5.0 1.3 102 chr3R 31320178 intron CG34347 + chr3R 31320229 intron CG34347 + chr3R 31320280 intron CG34347 + chr3R_8_31320001 chr3R_31320001 RAL-443 2826 chr3R 31413081 31413118 chr3R 31418301 31418324 copia 5 5210 1.5 5.0 3.2 1.2 5243 chr3R 31413081 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418324 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-443 2827 chr3R 31446065 31446078 chr3R 31446175 31446188 6 109 9.0 5.0 7.0 0.8 123 chr3R 31446065 intron Gprk2 + chr3R 31446126 intron Gprk2 + chr3R 31446188 intron Gprk2 + chr3R_6_31445001 chr3R_31445001 RAL-443 2828 chr3R 31630042 31630086 chr3R 31630167 31630202 13 123 3.5 2.5 3.0 3.2 160 chr3R 31630042 intron kek6 + chr3R 31630122 intron kek6 + chr3R 31630202 intron kek6 + chr3R_13_31630001 chr3R_31630001 RAL-443 2829 chr3R 31640809 31640851 chr3R 31641053 31641091 11 240 2.5 3.5 3.0 2.8 282 chr3R 31640809 intron kek6 + chr3R 31640950 intron kek6 + chr3R 31641091 intron kek6 + chr3R_11_31640001 chr3R_31640001 RAL-443 2830 chr3R 31691525 31691549 chr3R 31696296 31696335 Doc 9 4776 6.0 6.5 6.2 1.2 4810 chr3R 31691525 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696335 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-443 2831 chr3R 31854048 31854074 chr3R 31854121 31854139 8 82 3.0 4.5 3.8 1.7 91 chr3R 31854048 intron heph - chr3R 31854094 intron heph - chr3R 31854139 intron heph - chr3R_8_31850001 chr3R_31850001 RAL-443 2832 chr3R 31931175 31931211 chr3R 31931277 31931314 12 100 5.0 5.5 5.2 1.9 139 chr3R 31931175 intron heph - chr3R 31931244 intron heph - chr3R 31931314 intron heph - chr3R_12_31930001 chr3R_31930001 RAL-443 2833 chr3R 31962486 31962519 chr3R 31962592 31962603 4 104 4.0 2.0 3.0 1.0 117 chr3R 31962486 intron heph - chr3R 31962544 intron heph - chr3R 31962603 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-443 2834 chr3R 31997974 31998007 chr3R 32005464 32005482 blood 5 7487 3.5 7.5 5.5 0.8 7508 chr3R 31997974 intron heph - chr3R 32001728 intron heph - chr3R 32005482 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-443 2835 chr3R 31998014 31998024 chr3R 32005460 32005514 blood 9 7478 1.5 7.0 4.2 1.7 7500 chr3R 31998014 intron heph - chr3R 32001764 intron heph - chr3R 32005514 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-443 2836 chr3R 32068377 32068417 chr3R 32069044 32069090 15 679 29.0 29.5 29.2 0.5 713 chr3R 32068377 5` UTR Map205 - chr3R 32068734 intergenic Map205 - chr3R 32069090 intergenic not near genes chr3R_15_32065001 chr3R_32065001 RAL-443 2837 chr4 76480 76503 chr4 81943 81961 I-element 10 5461 10.5 3.5 7.0 1.2 5481 chr4 76480 intron pan + chr4 79220 intron pan + chr4 81961 intron pan + chr4_10_75001 chr4_75001 RAL-443 2838 chr4 76510 76513 chr4 81937 81953 I-element 4 5446 10.0 3.5 6.8 0.5 5443 chr4 76510 intron pan + chr4 79232 intron pan + chr4 81953 intron pan + chr4_4_75001 chr4_75001 RAL-443 2839 chr4 257381 257435 chr4 257571 257615 28 187 6.0 4.5 5.2 4.5 234 chr4 257381 exon RhoGAP102A + chr4 257498 intron RhoGAP102A + chr4 257615 intron RhoGAP102A + chr4_28_255001 chr4_255001 RAL-443 2840 chr4 280784 280827 chr4 281434 281455 11 645 5.0 5.5 5.2 1.8 671 chr4 280784 intron Syt7 - chr4 281120 intron Syt7 - chr4 281455 intron Syt7 - chr4_11_280001 chr4_280001 RAL-443 2841 chr4 289535 289559 chr4 289631 289655 7 96 5.5 7.5 6.5 0.9 120 chr4 289535 intron Syt7 - chr4 289595 intron Syt7 - chr4 289655 intron Syt7 - chr4_7_285001 chr4_285001 RAL-443 2842 chr4 314499 314528 chr4 314597 314626 15 98 3.5 6.0 4.8 2.6 127 chr4 314499 intergenic Zip102B -,CG32850 + chr4 314562 intergenic CG32850 +,Zip102B - chr4 314626 intergenic CG32850 + chr4_15_310001 chr4_310001 RAL-443 2843 chr4 314926 314975 chr4 315025 315060 4 96 7.0 1.0 4.0 0.8 134 chr4 314926 5` UTR CG32850 + chr4 314993 intron CG32850 + chr4 315060 intron CG32850 + chr4_4_310001 chr4_310001 RAL-443 2844 chr4 319980 320004 chr4 328176 328200 Stalker2 11 8195 5.5 6.5 6.0 1.6 8220 chr4 319980 3` UTR CG32850 + chr4 324090 intron CG32850 + chr4 328200 3` UTR,3` UTR CG32850 +,PMCA - chr4_11_320001 chr4_320001 RAL-443 2845 chr4 368682 368709 chr4 368834 368861 9 152 3.5 4.0 3.8 1.9 179 chr4 368682 intron Hcf + chr4 368772 intron Hcf + chr4 368861 intron Hcf + chr4_9_365001 chr4_365001 RAL-443 2846 chr4 671592 671626 chr4 680186 680214 Tirant 7 8593 8.5 8.0 8.2 0.8 8622 chr4 671592 intron CG11360 + chr4 675903 intron CG11360 + chr4 680214 intron CG11360 + chr4_7_675001 chr4_675001 RAL-443 2847 chr4 726645 726698 chr4 726755 726796 20 106 2.0 5.5 3.8 4.2 151 chr4 726645 intron bt + chr4 726720 intron bt + chr4 726796 intron bt + chr4_20_725001 chr4_725001 RAL-443 2848 chr4 959606 959653 chr4 959805 959852 11 196 4.0 2.0 3.0 2.8 246 chr4 959606 intergenic CR44030 +,CR45201 - chr4 959729 5` UTR CR44030 + chr4 959852 5` UTR CR44030 + chr4_11_955001 chr4_955001 RAL-443 2849 chr4 972478 972521 chr4 972580 972623 19 101 4.5 3.0 3.8 4.0 145 chr4 972478 intron fuss - chr4 972550 intron fuss - chr4 972623 intron fuss - chr4_19_970001 chr4_970001 RAL-443 2850 chrX 295838 295879 chrX 303478 303519 412 10 7639 2.0 6.5 4.2 1.9 7681 chrX 295838 intron CG3777 + chrX 299678 intron CG3777 + chrX 303519 intron CG3777 + chrX_10_295001 chrX_295001 RAL-443 2851 chrX 318458 318498 chrX 323564 323603 flea 14 5104 4.0 7.0 5.5 2.2 5145 chrX 318458 intron,intron CG3777 +,CG32816 - chrX 321030 intron,intron CG3777 +,CG32816 - chrX 323603 intron,intron CG3777 +,CG32816 - chrX_14_320001 chrX_320001 RAL-443 2852 chrX 428403 428452 chrX 434603 434657 3S18 26 6201 7.0 8.5 7.8 3.0 6254 chrX 428403 intron CG32816 - chrX 431530 intron CG32816 - chrX 434657 intron CG32816 - chrX_26_430001 chrX_430001 RAL-443 2853 chrX 538170 538222 chrX 538377 538429 16 202 8.5 4.5 6.5 2.1 259 chrX 538170 intron Appl + chrX 538300 intron Appl + chrX 538429 intron Appl + chrX_16_535001 chrX_535001 RAL-443 2854 chrX 551429 551443 chrX 558987 559023 412 4 7574 3.0 3.0 3.0 1.0 7594 chrX 551429 intron Appl + chrX 555226 intron Appl + chrX 559023 intron Appl + chrX_4_555001 chrX_555001 RAL-443 2855 chrX 581194 581234 chrX 581308 581316 7 91 2.0 1.5 1.8 2.5 122 chrX 581194 intergenic not near genes chrX 581255 intergenic not near genes chrX 581316 intergenic not near genes chrX_7_580001 chrX_580001 RAL-443 2856 chrX 802302 802319 chrX 802384 802401 4 84 4.0 4.5 4.2 0.8 99 chrX 802302 exon CG13359 - chrX 802352 exon CG13359 - chrX 802401 exon CG13359 - chrX_4_800001 chrX_800001 RAL-443 2857 chrX 812257 812293 chrX 817908 817935 297 10 5647 3.0 6.5 4.8 1.7 5678 chrX 812257 intron CG43867 - chrX 815096 intron CG43867 - chrX 817935 intron CG43867 - chrX_10_815001 chrX_815001 RAL-443 2858 chrX 825556 825609 chrX 825660 825672 11 100 6.0 3.5 4.8 1.9 116 chrX 825556 intron CG43867 - chrX 825614 intron CG43867 - chrX 825672 intron CG43867 - chrX_11_825001 chrX_825001 RAL-443 2859 chrX 827599 827629 chrX 835391 835430 roo 15 7804 8.5 7.5 8.0 1.7 7831 chrX 827599 intron CG43867 - chrX 831514 intron CG43867 - chrX 835430 intron CG43867 - chrX_15_830001 chrX_830001 RAL-443 2860 chrX 906688 906733 chrX 908497 908501 S-element 8 1797 1.5 7.5 4.5 1.5 1813 chrX 906688 intron CG43867 - chrX 907594 intron CG43867 - chrX 908501 intron CG43867 - chrX_8_905001 chrX_905001 RAL-443 2861 chrX 975526 975573 chrX 975626 975650 14 92 2.0 3.5 2.8 3.7 124 chrX 975526 intergenic not near genes chrX 975588 intergenic not near genes chrX 975650 intergenic not near genes chrX_14_975001 chrX_975001 RAL-443 2862 chrX 1053120 1053120 chrX 16983076 16983077 5 15929956 7.0 17.0 12.0 0.4 15929957 chrX 1053120 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-443 2863 chrX 1063739 1063749 chrX 1072552 1072562 roo 4 8813 11.0 5.5 8.2 0.4 8823 chrX 1063739 intron CR44779 + chrX 1068150 intron CR44779 + chrX 1072562 intron CR44779 + chrX_4_1065001 chrX_1065001 RAL-443 2864 chrX 1091951 1091986 chrX 1092136 1092178 11 190 0.5 7.5 4.0 2.2 227 chrX 1091951 intron CG3655 - chrX 1092064 intron CG3655 - chrX 1092178 intron CG3655 - chrX_11_1090001 chrX_1090001 RAL-443 2865 chrX 1357775 1357804 chrX 1367943 1367964 Doc 4 10177 5.5 5.0 5.2 0.6 10189 chrX 1357775 intergenic png - chrX 1362870 intergenic not near genes chrX 1367964 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-443 2866 chrX 1515210 1515255 chrX 1515307 1515337 12 89 4.5 4.0 4.2 2.3 127 chrX 1515210 intron inc + chrX 1515274 intron inc + chrX 1515337 intron inc + chrX_12_1515001 chrX_1515001 RAL-443 2867 chrX 1930523 1930545 chrX 1938113 1938135 opus 5 7589 10.0 10.0 10.0 0.5 7612 chrX 1930523 intergenic CG11596 + chrX 1934329 intergenic not near genes chrX 1938135 3` UTR CG3857 - chrX_5_1930001 chrX_1930001 RAL-443 2868 chrX 1930550 1930569 chrX 1938106 1938160 opus 7 7576 7.0 6.5 6.8 0.9 7610 chrX 1930550 intergenic CG11596 + chrX 1934355 intergenic not near genes chrX 1938160 3` UTR CG3857 - chrX_7_1930001 chrX_1930001 RAL-443 2869 chrX 1946486 1946538 chrX 1946585 1946637 16 97 5.5 10.0 7.8 1.8 151 chrX 1946486 intron Hr4 + chrX 1946562 intron Hr4 + chrX 1946637 intron Hr4 + chrX_16_1945001 chrX_1945001 RAL-443 2870 chrX 2096360 2096384 chrX 2096467 2096476 5 102 1.5 2.0 1.8 1.8 116 chrX 2096360 intron csw + chrX 2096418 intron csw + chrX 2096476 intron csw + chrX_5_2095001 chrX_2095001 RAL-443 2871 chrX 2099124 2099168 chrX 2099296 2099335 16 171 6.5 5.5 6.0 2.3 211 chrX 2099124 intron csw + chrX 2099230 intron csw + chrX 2099335 intron csw + chrX_16_2095001 chrX_2095001 RAL-443 2872 chrX 2399853 2399862 chrX 2408191 2408228 roo 7 8358 4.0 6.5 5.2 1.1 8375 chrX 2399853 intergenic not near genes chrX 2404040 intergenic not near genes chrX 2408228 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-443 2873 chrX 2429651 2429661 chrX 2429752 2429762 7 100 0.0 8.0 4.0 1.4 111 chrX 2429651 intergenic not near genes chrX 2429706 intergenic not near genes chrX 2429762 intergenic not near genes chrX_7_2425001 chrX_2425001 RAL-443 2874 chrX 2429662 2429666 chrX 2429748 2429767 5 98 0.0 7.5 3.8 1.0 105 chrX 2429662 intergenic not near genes chrX 2429714 intergenic not near genes chrX 2429767 intergenic not near genes chrX_5_2425001 chrX_2425001 RAL-443 2875 chrX 2578795 2578844 chrX 2578919 2578950 18 120 2.5 6.5 4.5 3.3 155 chrX 2578795 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578950 intergenic Vha36-3 -,Pdfr + chrX_18_2575001 chrX_2575001 RAL-443 2876 chrX 2635360 2635402 chrX 2635483 2635531 12 124 4.5 2.5 3.5 2.7 171 chrX 2635360 intron sgg + chrX 2635446 intron sgg + chrX 2635531 intron sgg + chrX_12_2635001 chrX_2635001 RAL-443 2877 chrX 2662170 2662192 chrX 2662278 2662278 6 108 2.5 3.5 3.0 1.5 108 chrX 2662170 intron sgg + chrX 2662224 intron sgg + chrX 2662278 intron sgg + chrX_6_2660001 chrX_2660001 RAL-443 2878 chrX 2745579 2745591 chrX 2745735 2745777 7 180 3.5 4.5 4.0 1.4 198 chrX 2745579 intron kirre + chrX 2745678 intron kirre + chrX 2745777 intron kirre + chrX_7_2745001 chrX_2745001 RAL-443 2879 chrX 2760009 2760058 chrX 2760322 2760331 4 293 2.0 3.0 2.5 1.1 322 chrX 2760009 intron kirre + chrX 2760170 intron kirre + chrX 2760331 intron kirre + chrX_4_2760001 chrX_2760001 RAL-443 2880 chrX 2844884 2844930 chrX 2852314 2852341 mdg1 10 7428 3.0 4.5 3.8 2.1 7457 chrX 2844884 intron kirre + chrX 2848612 intron kirre + chrX 2852341 intron kirre + chrX_10_2845001 chrX_2845001 RAL-443 2881 chrX 2972027 2972055 chrX 2972187 2972211 4 159 2.0 8.0 5.0 0.7 184 chrX 2972027 intron,intron kirre +,rst - chrX 2972119 intron,intron kirre +,rst - chrX 2972211 intron,intron kirre +,rst - chrX_4_2970001 chrX_2970001 RAL-443 2882 chrX 3058001 3058048 chrX 3058262 3058274 pogo 13 252 5.0 4.0 4.5 2.4 273 chrX 3058001 intron kirre + chrX 3058138 intron kirre + chrX 3058274 intron kirre + chrX_13_3055001 chrX_3055001 RAL-443 2883 chrX 3075613 3075666 chrX 3080940 3080973 Transpac 12 5316 4.5 9.5 7.0 1.5 5360 chrX 3075613 intron kirre + chrX 3078293 intron kirre + chrX 3080973 intron kirre + chrX_12_3075001 chrX_3075001 RAL-443 2884 chrX 3075613 3075616 chrX 3081233 3081236 Transpac 4 5620 9.5 4.0 6.8 0.5 5623 chrX 3075613 intron kirre + chrX 3078424 intron kirre + chrX 3081236 intron kirre + chrX_4_3075001 chrX_3075001 RAL-443 2885 chrX 3218489 3218515 chrX 3227658 3227684 roo 9 9169 4.0 3.0 3.5 2.0 9195 chrX 3218489 intron dnc + chrX 3223086 intron dnc + chrX 3227684 intron dnc + chrX_9_3220001 chrX_3220001 RAL-443 2886 chrX 3243616 3243643 chrX 3243726 3243748 13 106 6.5 7.0 6.8 1.7 132 chrX 3243616 intron dnc + chrX 3243682 intron dnc + chrX 3243748 intron dnc + chrX_13_3240001 chrX_3240001 RAL-443 2887 chrX 3243644 3243654 chrX 3243723 3243764 5 100 5.0 7.0 6.0 0.7 120 chrX 3243644 intron dnc + chrX 3243704 intron dnc + chrX 3243764 intron dnc + chrX_5_3240001 chrX_3240001 RAL-443 2888 chrX 3398140 3398375 chrX 3398224 3398472 8 98 5.5 10.0 7.8 0.9 332 chrX 3398140 intron,intron CR44999 +,CG12535 - chrX 3398306 intron,intron CR44999 +,CG12535 - chrX 3398472 intron,intron CR44999 +,CG12535 - chrX_8_3395001 chrX_3395001 RAL-443 2889 chrX 3408972 3409018 chrX 3409068 3409105 19 92 2.0 6.0 4.0 3.8 133 chrX 3408972 intron,intron CR44999 +,CG12535 - chrX 3409038 intron,intron CR44999 +,CG12535 - chrX 3409105 intron,intron CR44999 +,CG12535 - chrX_19_3405001 chrX_3405001 RAL-443 2890 chrX 3415002 3415050 chrX 3421206 3421235 3S18 11 6197 3.0 4.0 3.5 2.4 6233 chrX 3415002 intron,intron CR44999 +,CG12535 - chrX 3418118 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_11_3415001 chrX_3415001 RAL-443 2891 chrX 3493069 3493124 chrX 3502248 3502302 roo 7 9178 1.0 0.5 0.8 3.9 9233 chrX 3493069 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502302 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-443 2892 chrX 3535390 3535428 chrX 3535503 3535539 8 111 3.0 3.5 3.2 1.9 149 chrX 3535390 intron CG32791 - chrX 3535464 intron CG32791 - chrX 3535539 intron CG32791 - chrX_8_3535001 chrX_3535001 RAL-443 2893 chrX 3597533 3597583 chrX 3619721 3619723 roo 12 22178 4.0 4.0 4.0 2.4 22190 chrX 3597533 intron AstA-R1 + chrX 3608628 intron AstA-R1 + chrX 3619723 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-443 2894 chrX 3657399 3657447 chrX 3657498 3657545 19 94 3.5 5.0 4.2 3.7 146 chrX 3657399 intron AstA-R1 + chrX 3657472 intron AstA-R1 + chrX 3657545 intron AstA-R1 + chrX_19_3655001 chrX_3655001 RAL-443 2895 chrX 3752387 3752412 chrX 3764756 3764768 17.6 6 12366 22.5 13.5 18.0 0.3 12381 chrX 3752387 intron tlk + chrX 3758578 intron tlk + chrX 3764768 intron tlk + chrX_6_3755001 chrX_3755001 RAL-443 2896 chrX 3842300 3842353 chrX 3842561 3842614 pogo 10 259 3.5 3.0 3.2 2.4 314 chrX 3842300 intron ec + chrX 3842457 intron ec + chrX 3842614 intron ec + chrX_10_3840001 chrX_3840001 RAL-443 2897 chrX 3866085 3866136 chrX 3866183 3866229 10 93 5.5 3.5 4.5 1.8 144 chrX 3866085 intron yin - chrX 3866157 intron yin - chrX 3866229 intron yin - chrX_10_3865001 chrX_3865001 RAL-443 2898 chrX 3874733 3874770 chrX 3874821 3874830 10 88 4.0 3.0 3.5 2.2 97 chrX 3874733 intron CG2930 + chrX 3874782 intron CG2930 + chrX 3874830 intron CG2930 + chrX_10_3870001 chrX_3870001 RAL-443 2899 chrX 3881258 3881298 chrX 3881414 3881457 18 158 3.5 2.5 3.0 4.5 199 chrX 3881258 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881457 exon VhaAC39-1 + chrX_18_3880001 chrX_3880001 RAL-443 2900 chrX 3986845 3986888 chrX 3994497 3994541 412 16 7648 6.0 5.0 5.5 2.5 7696 chrX 3986845 intergenic not near genes chrX 3990693 intergenic not near genes chrX 3994541 intergenic not near genes chrX_16_3990001 chrX_3990001 RAL-443 2901 chrX 4132650 4132695 chrX 4132839 4132884 12 188 4.5 5.0 4.8 2.1 234 chrX 4132650 3` UTR GlcAT-I + chrX 4132767 3` UTR GlcAT-I + chrX 4132884 intergenic Fas2 -,GlcAT-I + chrX_12_4130001 chrX_4130001 RAL-443 2902 chrX 4157880 4157909 chrX 4164953 4164982 297 10 7071 5.0 2.5 3.8 2.1 7102 chrX 4157880 intron Fas2 - chrX 4161431 intron Fas2 - chrX 4164982 intron Fas2 - chrX_10_4160001 chrX_4160001 RAL-443 2903 chrX 4195058 4195107 chrX 4195575 4195612 9 513 2.5 6.0 4.2 1.7 554 chrX 4195058 intron Fas2 - chrX 4195335 intron Fas2 - chrX 4195612 intron Fas2 - chrX_9_4195001 chrX_4195001 RAL-443 2904 chrX 4324379 4324415 chrX 4324476 4324511 10 97 4.0 4.0 4.0 2.0 132 chrX 4324379 intron norpA + chrX 4324445 intron norpA + chrX 4324511 intron norpA + chrX_10_4320001 chrX_4320001 RAL-443 2905 chrX 4396968 4397011 chrX 4397061 4397069 11 97 5.5 7.5 6.5 1.5 101 chrX 4396968 intron CR32773 - chrX 4397018 intron CR32773 - chrX 4397069 intron CR32773 - chrX_11_4395001 chrX_4395001 RAL-443 2906 chrX 4515827 4515856 chrX 4515925 4515954 9 96 4.0 5.5 4.8 1.6 127 chrX 4515827 intron CR32773 - chrX 4515890 intron CR32773 - chrX 4515954 intron CR32773 - chrX_9_4515001 chrX_4515001 RAL-443 2907 chrX 4535815 4535867 chrX 4535956 4535982 14 132 3.0 2.0 2.5 4.0 167 chrX 4535815 intron,3` UTR CR32773 -,rb - chrX 4535898 intron,3` UTR CR32773 -,rb - chrX 4535982 intron,intron CR32773 -,rb - chrX_14_4535001 chrX_4535001 RAL-443 2908 chrX 4591470 4591501 chrX 4591931 4591976 11 460 5.5 7.5 6.5 1.5 506 chrX 4591470 intron CR32773 - chrX 4591723 intron CR32773 - chrX 4591976 intron CR32773 - chrX_11_4590001 chrX_4590001 RAL-443 2909 chrX 4693764 4693775 chrX 4693852 4693870 4 98 0.5 1.5 1.0 2.0 106 chrX 4693764 intron ctp + chrX 4693817 intron ctp + chrX 4693870 intron ctp + chrX_4_4690001 chrX_4690001 RAL-443 2910 chrX 4700376 4700426 chrX 4700739 4700744 jockey 12 357 3.0 7.0 5.0 2.0 368 chrX 4700376 3` UTR ctp + chrX 4700560 3` UTR ctp + chrX 4700744 3` UTR ctp + chrX_12_4700001 chrX_4700001 RAL-443 2911 chrX 4717345 4717376 chrX 4717880 4717909 8 535 3.0 3.5 3.2 1.9 564 chrX 4717345 intron Proc-R + chrX 4717627 intron Proc-R + chrX 4717909 intron Proc-R + chrX_8_4715001 chrX_4715001 RAL-443 2912 chrX 4723562 4723585 chrX 4723662 4723674 5 95 2.0 4.0 3.0 1.2 112 chrX 4723562 exon Proc-R + chrX 4723618 intron Proc-R + chrX 4723674 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-443 2913 chrX 4731798 4731843 chrX 4736911 4736915 jockey 5 5102 3.0 4.5 3.8 1.0 5117 chrX 4731798 intergenic not near genes chrX 4734356 intergenic not near genes chrX 4736915 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-443 2914 chrX 4763255 4763283 chrX 4763738 4763791 Stalker4 14 499 2.0 5.5 3.8 2.9 536 chrX 4763255 intergenic not near genes chrX 4763523 intergenic not near genes chrX 4763791 intergenic not near genes chrX_14_4760001 chrX_4760001 RAL-443 2915 chrX 4792360 4792409 chrX 4792813 4792821 jockey 13 447 2.0 2.5 2.2 4.1 461 chrX 4792360 intergenic not near genes chrX 4792590 intergenic not near genes chrX 4792821 intergenic not near genes chrX_13_4790001 chrX_4790001 RAL-443 2916 chrX 4816497 4816533 chrX 4817323 4817325 6 818 2.0 2.0 2.0 2.0 828 chrX 4816497 intergenic not near genes chrX 4816911 intergenic not near genes chrX 4817325 intergenic not near genes chrX_6_4815001 chrX_4815001 RAL-443 2917 chrX 4827959 4827990 chrX 4835350 4835375 Stalker4 5 7376 3.0 5.5 4.2 1.0 7416 chrX 4827959 intergenic not near genes chrX 4831667 intergenic not near genes chrX 4835375 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-443 2918 chrX 4871213 4871219 chrX 4871333 4871339 4 120 4.0 0.5 2.2 1.2 126 chrX 4871213 intron CG42594 + chrX 4871276 intron CG42594 + chrX 4871339 intron CG42594 + chrX_4_4870001 chrX_4870001 RAL-443 2919 chrX 4871220 4871229 chrX 4871320 4871349 5 116 4.0 0.5 2.2 1.6 129 chrX 4871220 intron CG42594 + chrX 4871284 intron CG42594 + chrX 4871349 intron CG42594 + chrX_5_4870001 chrX_4870001 RAL-443 2920 chrX 4990026 4990051 chrX 4997260 4997270 roo 10 7231 8.5 4.5 6.5 1.3 7244 chrX 4990026 intron CR44833 - chrX 4993648 intron CR44833 - chrX 4997270 intron CR44833 - chrX_10_4990001 chrX_4990001 RAL-443 2921 chrX 4990053 4990071 chrX 4997256 4997305 roo 9 7231 5.0 4.5 4.8 1.6 7252 chrX 4990053 intron CR44833 - chrX 4993679 intron CR44833 - chrX 4997305 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-443 2922 chrX 5096276 5096301 chrX 5103861 5103886 springer 5 7585 3.0 12.0 7.5 0.6 7610 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100081 intron,intron CG15465 +,rg + chrX 5103886 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-443 2923 chrX 5134791 5134830 chrX 5134912 5134935 17 119 4.5 12.5 8.5 1.8 144 chrX 5134791 intron,intron CG15465 +,rg + chrX 5134863 intron,intron CG15465 +,rg + chrX 5134935 intron,intron CG15465 +,rg + chrX_17_5130001 chrX_5130001 RAL-443 2924 chrX 5329427 5329473 chrX 5329544 5329584 10 112 2.5 0.5 1.5 4.0 157 chrX 5329427 intergenic CG3309 -,XRCC1 + chrX 5329506 intergenic CG3309 -,XRCC1 + chrX 5329584 intergenic CG3309 -,XRCC1 + chrX_10_5325001 chrX_5325001 RAL-443 2925 chrX 5435848 5435898 chrX 5436000 5436009 15 149 2.0 4.5 3.2 3.6 161 chrX 5435848 intergenic CR44471 + chrX 5435928 intergenic CR44471 + chrX 5436009 intergenic CR44471 + chrX_15_5435001 chrX_5435001 RAL-443 2926 chrX 5524829 5524859 chrX 5528708 5528740 412 7 3879 5.5 4.0 4.8 1.2 3911 chrX 5524829 intergenic snoRNA:Psi28S-3342 - chrX 5526784 intergenic not near genes chrX 5528740 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-443 2927 chrX 5725012 5725058 chrX 5725135 5725181 12 121 4.0 4.0 4.0 2.4 169 chrX 5725012 intron CG32758 - chrX 5725096 intron CG32758 - chrX 5725181 intron CG32758 - chrX_12_5725001 chrX_5725001 RAL-443 2928 chrX 5798868 5798886 chrX 5799030 5799068 6 169 2.5 5.5 4.0 1.2 200 chrX 5798868 intergenic not near genes chrX 5798968 intergenic not near genes chrX 5799068 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-443 2929 chrX 5860591 5860624 chrX 5861107 5861154 5 525 0.0 7.0 3.5 1.1 563 chrX 5860591 intergenic not near genes chrX 5860872 intergenic not near genes chrX 5861154 intergenic not near genes chrX_5_5860001 chrX_5860001 RAL-443 2930 chrX 5883798 5883828 chrX 5884059 5884076 pogo 9 257 4.0 7.0 5.5 1.4 278 chrX 5883798 intron CR45668 - chrX 5883937 intron CR45668 - chrX 5884076 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-443 2931 chrX 5884143 5884189 chrX 5884404 5884439 pogo 19 255 4.5 6.5 5.5 2.9 296 chrX 5884143 intron CR45668 - chrX 5884291 intron CR45668 - chrX 5884439 intron CR45668 - chrX_19_5880001 chrX_5880001 RAL-443 2932 chrX 5937092 5937138 chrX 5937185 5937237 15 96 5.0 4.0 4.5 2.7 145 chrX 5937092 intron CG3726 + chrX 5937164 intron CG3726 + chrX 5937237 intron CG3726 + chrX_15_5935001 chrX_5935001 RAL-443 2933 chrX 6100223 6100257 chrX 6100800 6100834 6 577 3.5 7.5 5.5 0.9 611 chrX 6100223 intron Nep1 + chrX 6100528 intron Nep1 + chrX 6100834 intron Nep1 + chrX_6_6100001 chrX_6100001 RAL-443 2934 chrX 6118676 6118732 chrX 6118778 6118834 24 99 5.0 4.5 4.8 4.1 158 chrX 6118676 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118834 intron Ca-alpha1T - chrX_24_6115001 chrX_6115001 RAL-443 2935 chrX 6171572 6171614 chrX 6179015 6179057 Quasimodo 12 7446 5.5 1.5 3.5 2.7 7485 chrX 6171572 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179057 intron Ca-alpha1T - chrX_12_6175001 chrX_6175001 RAL-443 2936 chrX 6232734 6232774 chrX 6232833 6232873 14 96 7.0 8.0 7.5 1.6 139 chrX 6232734 3` UTR CG14446 + chrX 6232804 3` UTR CG14446 + chrX 6232873 3` UTR CG14446 + chrX_14_6230001 chrX_6230001 RAL-443 2937 chrX 6312173 6312224 chrX 6312276 6312317 13 99 4.5 7.0 5.8 1.9 144 chrX 6312173 intron CG15894 + chrX 6312245 intron CG15894 + chrX 6312317 intron CG15894 + chrX_13_6310001 chrX_6310001 RAL-443 2938 chrX 6315158 6315190 chrX 6315289 6315340 11 137 5.5 3.0 4.2 2.1 182 chrX 6315158 intron CG15894 + chrX 6315249 intron CG15894 + chrX 6315340 intron CG15894 + chrX_11_6315001 chrX_6315001 RAL-443 2939 chrX 6388645 6388695 chrX 6388741 6388791 22 95 2.5 7.5 5.0 3.7 146 chrX 6388645 intergenic not near genes chrX 6388718 intergenic not near genes chrX 6388791 intergenic not near genes chrX_22_6385001 chrX_6385001 RAL-443 2940 chrX 6392860 6392880 chrX 6397644 6397649 Doc 6 4782 5.5 9.5 7.5 0.7 4789 chrX 6392860 intergenic not near genes chrX 6395254 intergenic not near genes chrX 6397649 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-443 2941 chrX 6392887 6392898 chrX 6397632 6397651 Doc 7 4765 4.0 7.5 5.8 1.0 4764 chrX 6392887 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397651 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-443 2942 chrX 6562821 6562836 chrX 6571302 6571328 Tirant 4 8490 3.5 5.5 4.5 0.7 8507 chrX 6562821 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571328 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-443 2943 chrX 6591835 6591874 chrX 6591940 6591979 8 105 5.0 0.5 2.8 2.1 144 chrX 6591835 intron Pat1 + chrX 6591907 intron Pat1 + chrX 6591979 intron Pat1 + chrX_8_6590001 chrX_6590001 RAL-443 2944 chrX 6605480 6605499 chrX 6608523 6608542 Burdock 4 3042 2.0 4.5 3.2 1.0 3062 chrX 6605480 intron pigs + chrX 6607011 intron pigs + chrX 6608542 intron pigs + chrX_4_6605001 chrX_6605001 RAL-443 2945 chrX 6618454 6618466 chrX 6618544 6618564 4 96 6.0 4.0 5.0 0.7 110 chrX 6618454 intron pigs + chrX 6618509 intron pigs + chrX 6618564 intron pigs + chrX_4_6615001 chrX_6615001 RAL-443 2946 chrX 6629772 6629795 chrX 6629879 6629902 7 107 2.0 3.0 2.5 2.0 130 chrX 6629772 intron pigs + chrX 6629837 intron pigs + chrX 6629902 intron pigs + chrX_7_6625001 chrX_6625001 RAL-443 2947 chrX 6792072 6792080 chrX 6792183 6792191 6 111 2.0 3.0 2.5 1.7 119 chrX 6792072 intron C3G - chrX 6792132 intron C3G - chrX 6792191 intron C3G - chrX_6_6790001 chrX_6790001 RAL-443 2948 chrX 6859544 6859558 chrX 6859977 6859991 6 432 11.0 0.5 5.8 0.9 447 chrX 6859544 intron CG14434 - chrX 6859768 intron CG14434 - chrX 6859991 intron CG14434 - chrX_6_6855001 chrX_6855001 RAL-443 2949 chrX 6865771 6865781 chrX 6865872 6865881 5 101 12.0 3.5 7.8 0.6 110 chrX 6865771 intron CG14434 - chrX 6865826 intron CG14434 - chrX 6865881 intron CG14434 - chrX_5_6865001 chrX_6865001 RAL-443 2950 chrX 6897273 6897292 chrX 6897592 6897609 5 318 1.5 7.0 4.2 1.0 336 chrX 6897273 intergenic not near genes chrX 6897441 intergenic not near genes chrX 6897609 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-443 2951 chrX 6897674 6897710 chrX 6897804 6897824 7 124 4.0 2.0 3.0 1.8 150 chrX 6897674 intergenic not near genes chrX 6897749 intergenic not near genes chrX 6897824 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-443 2952 chrX 6903231 6903239 chrX 6903314 6903338 4 87 1.5 4.0 2.8 1.1 107 chrX 6903231 intergenic not near genes chrX 6903284 intergenic not near genes chrX 6903338 intergenic not near genes chrX_4_6900001 chrX_6900001 RAL-443 2953 chrX 6984602 6984653 chrX 6984699 6984750 13 94 3.5 3.0 3.2 3.1 148 chrX 6984602 intron ogre - chrX 6984676 intron ogre - chrX 6984750 intron ogre - chrX_13_6980001 chrX_6980001 RAL-443 2954 chrX 6989487 6989534 chrX 6989588 6989609 12 103 6.0 2.5 4.2 2.3 122 chrX 6989487 intron ogre - chrX 6989548 intron ogre - chrX 6989609 intron ogre - chrX_12_6985001 chrX_6985001 RAL-443 2955 chrX 7023601 7023634 chrX 7030990 7031044 Tabor 8 7400 5.0 5.5 5.2 1.3 7443 chrX 7023601 intron CG12541 - chrX 7027322 intron CG12541 - chrX 7031044 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-443 2956 chrX 7125226 7125264 chrX 7134405 7134443 roo 13 9179 1.0 5.0 3.0 3.2 9217 chrX 7125226 intergenic not near genes chrX 7129834 intergenic not near genes chrX 7134443 intergenic not near genes chrX_13_7125001 chrX_7125001 RAL-443 2957 chrX 7301597 7301622 chrX 7301815 7301817 6 207 3.0 0.5 1.8 2.1 220 chrX 7301597 intron,intron CR44357 -,CG1677 - chrX 7301707 intron,intron CR44357 -,CG1677 - chrX 7301817 intron,intron CR44357 -,CG1677 - chrX_6_7300001 chrX_7300001 RAL-443 2958 chrX 7570628 7570645 chrX 7570772 7570796 6 148 2.5 2.0 2.2 1.9 168 chrX 7570628 intergenic not near genes chrX 7570712 intergenic not near genes chrX 7570796 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-443 2959 chrX 7570647 7570658 chrX 7570770 7570805 6 143 2.0 2.0 2.0 2.0 158 chrX 7570647 intergenic not near genes chrX 7570726 intergenic not near genes chrX 7570805 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-443 2960 chrX 7702885 7702908 chrX 7703344 7703367 jockey 10 458 12.5 9.0 10.8 0.8 482 chrX 7702885 intron CHES-1-like - chrX 7703126 intron CHES-1-like - chrX 7703367 intron CHES-1-like - chrX_10_7700001 chrX_7700001 RAL-443 2961 chrX 7702915 7702934 chrX 7703336 7703359 jockey 5 433 6.0 7.0 6.5 0.7 444 chrX 7702915 intron CHES-1-like - chrX 7703137 intron CHES-1-like - chrX 7703359 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-443 2962 chrX 7832415 7832465 chrX 7832524 7832574 22 106 3.5 2.0 2.8 5.8 159 chrX 7832415 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832574 intron CG1402 + chrX_22_7830001 chrX_7830001 RAL-443 2963 chrX 7845715 7845751 chrX 7847226 7847233 hopper2 10 1506 7.0 7.0 7.0 1.2 1518 chrX 7845715 intergenic not near genes chrX 7846474 intergenic not near genes chrX 7847233 intergenic not near genes chrX_10_7845001 chrX_7845001 RAL-443 2964 chrX 7881833 7881877 chrX 7881937 7881979 15 100 1.0 5.5 3.2 3.6 146 chrX 7881833 intergenic Ir7f -,Ir7e - chrX 7881906 intergenic Ir7f -,Ir7e - chrX 7881979 3` UTR Ir7f - chrX_15_7880001 chrX_7880001 RAL-443 2965 chrX 8012067 8012090 chrX 8012158 8012191 8 99 4.5 4.5 4.5 1.5 124 chrX 8012067 intron Tbh + chrX 8012129 intron Tbh + chrX 8012191 intron Tbh + chrX_8_8010001 chrX_8010001 RAL-443 2966 chrX 8012091 8012103 chrX 8012157 8012204 8 88 2.0 4.5 3.2 1.9 113 chrX 8012091 intron Tbh + chrX 8012148 intron Tbh + chrX 8012204 intron Tbh + chrX_8_8010001 chrX_8010001 RAL-443 2967 chrX 8031409 8031436 chrX 8035738 8035765 Juan 12 4328 11.0 9.5 10.2 1.1 4356 chrX 8031409 intergenic not near genes chrX 8033587 intergenic not near genes chrX 8035765 3` UTR CG2233 - chrX_12_8030001 chrX_8030001 RAL-443 2968 chrX 8031441 8031461 chrX 8035734 8035746 Juan 6 4313 8.0 8.5 8.2 0.7 4305 chrX 8031441 intergenic not near genes chrX 8033594 intergenic not near genes chrX 8035746 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-443 2969 chrX 8079896 8079936 chrX 8080026 8080066 9 126 1.0 3.5 2.2 2.8 170 chrX 8079896 exon CG2254 - chrX 8079981 intron CG2254 - chrX 8080066 intron CG2254 - chrX_9_8075001 chrX_8075001 RAL-443 2970 chrX 8085560 8085600 chrX 8085666 8085706 13 103 4.0 4.5 4.2 2.5 146 chrX 8085560 intron,5` UTR CG2256 -,CR45535 + chrX 8085633 intron,5` UTR CG2256 -,CR45535 + chrX 8085706 intron,5` UTR CG2256 -,CR45535 + chrX_13_8085001 chrX_8085001 RAL-443 2971 chrX 8092278 8092322 chrX 8092376 8092418 16 104 2.5 5.5 4.0 3.2 140 chrX 8092278 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092418 intron Ubc-E2H - chrX_16_8090001 chrX_8090001 RAL-443 2972 chrX 8297384 8297426 chrX 8297703 8297724 5 307 0.5 2.0 1.2 2.3 340 chrX 8297384 intron nAChRalpha3 - chrX 8297554 intron nAChRalpha3 - chrX 8297724 intron nAChRalpha3 - chrX_5_8295001 chrX_8295001 RAL-443 2973 chrX 8364836 8364863 chrX 8365253 8365280 BS 10 416 4.0 8.0 6.0 1.4 444 chrX 8364836 intron nAChRalpha3 - chrX 8365058 intron nAChRalpha3 - chrX 8365280 intron nAChRalpha3 - chrX_10_8365001 chrX_8365001 RAL-443 2974 chrX 8500919 8500953 chrX 8501093 8501131 11 182 6.5 0.0 3.2 2.6 212 chrX 8500919 intron CG33181 + chrX 8501025 intron CG33181 + chrX 8501131 intron CG33181 + chrX_11_8500001 chrX_8500001 RAL-443 2975 chrX 8505009 8505043 chrX 8505445 8505479 10 434 2.5 5.0 3.8 2.1 470 chrX 8505009 intron CG33181 + chrX 8505244 intron CG33181 + chrX 8505479 intron CG33181 + chrX_10_8505001 chrX_8505001 RAL-443 2976 chrX 8506625 8506674 chrX 8506724 8506735 23 93 4.5 3.0 3.8 4.8 110 chrX 8506625 intron CG33181 + chrX 8506680 intron CG33181 + chrX 8506735 intron CG33181 + chrX_23_8505001 chrX_8505001 RAL-443 2977 chrX 8544138 8544163 chrX 8544237 8544262 10 99 5.0 5.5 5.2 1.6 124 chrX 8544138 intron Nrg + chrX 8544200 intron Nrg + chrX 8544262 intron Nrg + chrX_10_8540001 chrX_8540001 RAL-443 2978 chrX 8811035 8811072 chrX 8811152 8811162 9 113 4.0 8.5 6.2 1.2 127 chrX 8811035 intergenic not near genes chrX 8811098 intergenic not near genes chrX 8811162 intergenic not near genes chrX_9_8810001 chrX_8810001 RAL-443 2979 chrX 8813032 8813071 chrX 8813166 8813205 10 133 1.0 4.0 2.5 2.9 173 chrX 8813032 intergenic not near genes chrX 8813118 intergenic not near genes chrX 8813205 intergenic not near genes chrX_10_8810001 chrX_8810001 RAL-443 2980 chrX 8860773 8860799 chrX 8860877 8860903 9 103 0.0 8.5 4.2 1.7 130 chrX 8860773 intron CG12075 + chrX 8860838 intron CG12075 + chrX 8860903 intron CG12075 + chrX_9_8860001 chrX_8860001 RAL-443 2981 chrX 8877760 8877804 chrX 8877904 8877908 20 141 4.0 5.0 4.5 3.6 148 chrX 8877760 intron Moe - chrX 8877834 intron Moe - chrX 8877908 intron Moe - chrX_20_8875001 chrX_8875001 RAL-443 2982 chrX 8913535 8913540 chrX 8913634 8913658 4 107 3.5 4.0 3.8 0.8 123 chrX 8913535 intron rdgA + chrX 8913596 intron rdgA + chrX 8913658 intron rdgA + chrX_4_8910001 chrX_8910001 RAL-443 2983 chrX 8922319 8922360 chrX 8922762 8922762 jockey 13 434 1.0 3.0 2.0 4.3 443 chrX 8922319 intron rdgA + chrX 8922540 intron rdgA + chrX 8922762 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-443 2984 chrX 8948752 8948788 chrX 8956282 8956283 roo 9 7526 5.0 7.5 6.2 1.2 7531 chrX 8948752 intron rdgA + chrX 8952518 intron rdgA + chrX 8956283 intron rdgA + chrX_9_8950001 chrX_8950001 RAL-443 2985 chrX 9042009 9042019 chrX 9042138 9042148 4 128 0.0 7.5 3.8 0.8 139 chrX 9042009 intron,intron CR43836 -,CG42388 + chrX 9042078 intron,intron CR43836 -,CG42388 + chrX 9042148 intron,intron CR43836 -,CG42388 + chrX_4_9040001 chrX_9040001 RAL-443 2986 chrX 9508119 9508159 chrX 9509657 9509697 jockey 11 1537 6.5 4.0 5.2 1.8 1578 chrX 9508119 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509697 intron CG32700 - chrX_11_9505001 chrX_9505001 RAL-443 2987 chrX 9575774 9575814 chrX 9576113 9576156 mdg3 9 341 2.0 6.5 4.2 1.7 382 chrX 9575774 intron,exon CG32699 -,CG42395 - chrX 9575965 intron,intron CG32699 -,CG42395 - chrX 9576156 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-443 2988 chrX 9599169 9599201 chrX 9599267 9599276 6 94 6.0 9.0 7.5 0.7 107 chrX 9599169 intergenic not near genes chrX 9599222 intergenic not near genes chrX 9599276 intergenic not near genes chrX_6_9595001 chrX_9595001 RAL-443 2989 chrX 9758033 9758081 chrX 9758138 9758176 9 101 1.0 0.0 0.5 6.0 143 chrX 9758033 intergenic not near genes chrX 9758104 intergenic not near genes chrX 9758176 intergenic not near genes chrX_9_9755001 chrX_9755001 RAL-443 2990 chrX 9854687 9854729 chrX 9854802 9854815 6 108 3.0 2.5 2.8 1.6 128 chrX 9854687 intergenic not near genes chrX 9854751 intergenic not near genes chrX 9854815 intergenic not near genes chrX_6_9850001 chrX_9850001 RAL-443 2991 chrX 10065502 10065546 chrX 10065609 10065653 14 103 4.5 7.0 5.8 2.1 151 chrX 10065502 intron CG15312 - chrX 10065578 intron CG15312 - chrX 10065653 intron CG15312 - chrX_14_10065001 chrX_10065001 RAL-443 2992 chrX 10087629 10087678 chrX 10087734 10087783 11 101 4.0 6.5 5.2 1.8 154 chrX 10087629 intron RhoU + chrX 10087706 intron RhoU + chrX 10087783 intron RhoU + chrX_11_10085001 chrX_10085001 RAL-443 2993 chrX 10138195 10138247 chrX 10145719 10145771 412 16 7523 9.0 4.0 6.5 2.1 7576 chrX 10138195 intron,intron RhoU +,CR44894 - chrX 10141983 intron,intron RhoU +,CR44894 - chrX 10145771 intron,intron RhoU +,CR44894 - chrX_16_10140001 chrX_10140001 RAL-443 2994 chrX 10149995 10150034 chrX 10150238 10150277 7 241 5.0 0.0 2.5 2.0 282 chrX 10149995 intron CR44894 - chrX 10150136 intron CR44894 - chrX 10150277 intron CR44894 - chrX_7_10150001 chrX_10150001 RAL-443 2995 chrX 10154264 10154307 chrX 10154360 10154403 11 94 6.0 1.5 3.8 2.3 139 chrX 10154264 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154403 intron,exon CR44894 -,CG12645 + chrX_11_10150001 chrX_10150001 RAL-443 2996 chrX 10216837 10216847 chrX 10216928 10216948 9 96 9.0 9.0 9.0 0.9 111 chrX 10216837 3` UTR l(1)G0230 + chrX 10216892 3` UTR l(1)G0230 + chrX 10216948 3` UTR l(1)G0230 + chrX_9_10215001 chrX_10215001 RAL-443 2997 chrX 10267306 10267331 chrX 10276460 10276501 roo 12 9168 0.5 7.0 3.8 2.5 9195 chrX 10267306 3` UTR alpha-Man-I - chrX 10271904 intron alpha-Man-I - chrX 10276501 3` UTR alpha-Man-I - chrX_12_10270001 chrX_10270001 RAL-443 2998 chrX 10317544 10317576 chrX 10317642 10317674 13 95 1.5 7.5 4.5 2.4 130 chrX 10317544 intron alpha-Man-I - chrX 10317609 intron alpha-Man-I - chrX 10317674 intron alpha-Man-I - chrX_13_10315001 chrX_10315001 RAL-443 2999 chrX 10317577 10317582 chrX 10317634 10317680 4 88 1.0 6.0 3.5 0.9 103 chrX 10317577 intron alpha-Man-I - chrX 10317628 intron alpha-Man-I - chrX 10317680 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-443 3000 chrX 10326030 10326068 chrX 10326128 10326166 8 93 3.0 6.0 4.5 1.5 136 chrX 10326030 intergenic alpha-Man-I -,CG2909 + chrX 10326098 intergenic alpha-Man-I -,CG2909 + chrX 10326166 intergenic alpha-Man-I -,CG2909 + chrX_8_10325001 chrX_10325001 RAL-443 3001 chrX 10348792 10348822 chrX 10356367 10356371 springer 7 7576 5.0 6.5 5.8 1.0 7579 chrX 10348792 intergenic snoRNA:U3:9B + chrX 10352582 intergenic not near genes chrX 10356371 intergenic l(1)G0289 - chrX_7_10350001 chrX_10350001 RAL-443 3002 chrX 10446667 10446715 chrX 10446769 10446811 14 99 3.0 3.5 3.2 3.3 144 chrX 10446667 intron CG32683 - chrX 10446739 intron CG32683 - chrX 10446811 intron CG32683 - chrX_14_10445001 chrX_10445001 RAL-443 3003 chrX 10453060 10453101 chrX 10453264 10453312 17 210 4.0 3.0 3.5 3.8 252 chrX 10453060 intron CG32683 - chrX 10453186 intron CG32683 - chrX 10453312 intron CG32683 - chrX_17_10450001 chrX_10450001 RAL-443 3004 chrX 10506490 10506522 chrX 10506587 10506625 7 96 2.5 4.5 3.5 1.6 135 chrX 10506490 intron spri - chrX 10506558 intron spri - chrX 10506625 intron spri - chrX_7_10505001 chrX_10505001 RAL-443 3005 chrX 10508614 10508663 chrX 10508711 10508760 11 96 2.5 3.5 3.0 2.8 146 chrX 10508614 intron spri - chrX 10508687 intron spri - chrX 10508760 intron spri - chrX_11_10505001 chrX_10505001 RAL-443 3006 chrX 10532492 10532507 chrX 10532591 10532598 10 98 9.0 7.5 8.2 1.1 106 chrX 10532492 intron spri - chrX 10532545 intron spri - chrX 10532598 intron spri - chrX_10_10530001 chrX_10530001 RAL-443 3007 chrX 10532510 10532528 chrX 10532589 10532626 5 86 6.5 7.0 6.8 0.6 116 chrX 10532510 intron spri - chrX 10532568 intron spri - chrX 10532626 intron spri - chrX_5_10530001 chrX_10530001 RAL-443 3008 chrX 10550842 10550885 chrX 10552329 10552337 hobo 6 1476 1.5 0.5 1.0 3.0 1495 chrX 10550842 intron spri - chrX 10551590 intron spri - chrX 10552337 intron spri - chrX_6_10550001 chrX_10550001 RAL-443 3009 chrX 10675257 10675309 chrX 10675640 10675692 17 379 5.0 5.0 5.0 2.8 435 chrX 10675257 intron X11Lbeta + chrX 10675474 intron X11Lbeta + chrX 10675692 intron X11Lbeta + chrX_17_10675001 chrX_10675001 RAL-443 3010 chrX 10686031 10686083 chrX 10691188 10691240 roo 15 5154 5.5 5.5 5.5 2.3 5209 chrX 10686031 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691240 intron X11Lbeta + chrX_15_10685001 chrX_10685001 RAL-443 3011 chrX 11034268 11034321 chrX 11034618 11034671 8 350 7.0 4.5 5.8 1.2 403 chrX 11034268 intron CG42339 - chrX 11034470 intron CG42339 - chrX 11034671 intron CG42339 - chrX_8_11030001 chrX_11030001 RAL-443 3012 chrX 11069148 11069192 chrX 11069304 11069343 12 157 6.0 4.0 5.0 2.0 195 chrX 11069148 intergenic not near genes chrX 11069246 intergenic not near genes chrX 11069343 intergenic not near genes chrX_12_11065001 chrX_11065001 RAL-443 3013 chrX 11087844 11087886 chrX 11087958 11088000 10 112 3.0 6.5 4.8 1.7 156 chrX 11087844 intergenic not near genes chrX 11087922 intergenic not near genes chrX 11088000 intergenic not near genes chrX_10_11085001 chrX_11085001 RAL-443 3014 chrX 11095985 11096027 chrX 11103102 11103129 HMS-Beagle 11 7118 5.0 7.0 6.0 1.6 7144 chrX 11095985 intergenic not near genes chrX 11099557 intergenic not near genes chrX 11103129 intron CG42249 + chrX_11_11095001 chrX_11095001 RAL-443 3015 chrX 11109417 11109417 chrX 12946234 12946235 6 1836817 16.5 28.0 22.2 0.3 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-443 3016 chrX 11165885 11165898 chrX 11166236 11166250 4 352 3.0 8.0 5.5 0.6 365 chrX 11165885 intergenic not near genes chrX 11166068 intergenic not near genes chrX 11166250 intergenic not near genes chrX_4_11165001 chrX_11165001 RAL-443 3017 chrX 11205273 11205316 chrX 11205369 11205412 12 95 4.5 4.5 4.5 2.2 139 chrX 11205273 intergenic not near genes chrX 11205342 intergenic not near genes chrX 11205412 intergenic not near genes chrX_12_11205001 chrX_11205001 RAL-443 3018 chrX 11312049 11312094 chrX 11319422 11319435 Stalker2 7 7360 1.5 3.5 2.5 2.0 7386 chrX 11312049 intergenic not near genes chrX 11315742 intergenic not near genes chrX 11319435 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-443 3019 chrX 11379750 11379790 chrX 11379914 11379934 11 157 4.0 6.0 5.0 1.8 184 chrX 11379750 intron dlg1 + chrX 11379842 intron dlg1 + chrX 11379934 intron dlg1 + chrX_11_11375001 chrX_11375001 RAL-443 3020 chrX 11419158 11419202 chrX 11419296 11419344 9 135 2.5 1.5 2.0 3.0 186 chrX 11419158 intergenic not near genes chrX 11419251 intergenic not near genes chrX 11419344 intergenic not near genes chrX_9_11415001 chrX_11415001 RAL-443 3021 chrX 11499096 11499136 chrX 11499189 11499234 8 94 1.0 4.5 2.8 2.1 138 chrX 11499096 intron Drak + chrX 11499165 intron Drak + chrX 11499234 intron Drak + chrX_8_11495001 chrX_11495001 RAL-443 3022 chrX 11633396 11633446 chrX 11640470 11640505 297 16 7070 3.0 6.5 4.8 2.8 7109 chrX 11633396 intron Ptp10D + chrX 11636950 intron Ptp10D + chrX 11640505 intron Ptp10D + chrX_16_11635001 chrX_11635001 RAL-443 3023 chrX 11684850 11684901 chrX 11684996 11685032 11 142 7.0 0.5 3.8 2.3 182 chrX 11684850 intron bif + chrX 11684941 intron bif + chrX 11685032 intron bif + chrX_11_11680001 chrX_11680001 RAL-443 3024 chrX 11719850 11719893 chrX 11719950 11719993 14 98 4.0 4.0 4.0 2.8 143 chrX 11719850 3` UTR prtp + chrX 11719922 intergenic prtp +,Tango10 + chrX 11719993 intergenic prtp +,Tango10 + chrX_14_11715001 chrX_11715001 RAL-443 3025 chrX 11798996 11799038 chrX 11799102 11799144 14 104 3.0 3.5 3.2 3.3 148 chrX 11798996 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799144 intron CkIIbeta + chrX_14_11795001 chrX_11795001 RAL-443 3026 chrX 11804653 11804684 chrX 11804777 11804808 12 122 4.0 3.5 3.8 2.5 155 chrX 11804653 intron Hsc70-3 - chrX 11804730 intron Hsc70-3 - chrX 11804808 intron Hsc70-3 - chrX_12_11800001 chrX_11800001 RAL-443 3027 chrX 11922343 11922383 chrX 11922496 11922536 18 151 5.0 3.5 4.2 3.5 193 chrX 11922343 exon Sclp - chrX 11922440 intron Sclp - chrX 11922536 intron Sclp - chrX_18_11920001 chrX_11920001 RAL-443 3028 chrX 11936553 11936578 chrX 11936672 11936697 7 118 0.0 3.5 1.8 2.5 144 chrX 11936553 intron cac - chrX 11936625 intron cac - chrX 11936697 exon cac - chrX_7_11935001 chrX_11935001 RAL-443 3029 chrX 12191576 12191584 chrX 12191684 12191692 5 108 6.5 8.0 7.2 0.6 116 chrX 12191576 intron Ten-a + chrX 12191634 intron Ten-a + chrX 12191692 intron Ten-a + chrX_5_12190001 chrX_12190001 RAL-443 3030 chrX 12202669 12202726 chrX 12202863 12202877 13 187 0.0 4.0 2.0 4.3 208 chrX 12202669 intron Ten-a + chrX 12202773 intron Ten-a + chrX 12202877 intron Ten-a + chrX_13_12200001 chrX_12200001 RAL-443 3031 chrX 12301960 12301986 chrX 12303260 12303274 X-element 4 1308 1.5 2.5 2.0 1.3 1314 chrX 12301960 intron Ten-a + chrX 12302617 intron Ten-a + chrX 12303274 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-443 3032 chrX 12465469 12465481 chrX 12465565 12465577 5 96 3.5 0.0 1.8 1.8 108 chrX 12465469 exon CG42258 + chrX 12465523 intron CG42258 + chrX 12465577 intron CG42258 + chrX_5_12465001 chrX_12465001 RAL-443 3033 chrX 12469883 12469890 chrX 12470005 12470012 4 122 13.5 3.5 8.5 0.4 129 chrX 12469883 intron CG42258 + chrX 12469948 intron CG42258 + chrX 12470012 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-443 3034 chrX 12492980 12492985 chrX 13057293 13057298 5 564313 5.5 27.0 16.2 0.3 564318 chrX 12492980 3` UTR Lsp1alpha + chrX 12775139 3` UTR CG32647 - chrX 13057298 intron rad + chrX_5_12775001 chrX_12775001 RAL-443 3035 chrX 12532633 12532667 chrX 12532799 12532804 4 157 1.5 0.0 0.8 2.2 171 chrX 12532633 intron CG43921 - chrX 12532718 intron CG43921 - chrX 12532804 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-443 3036 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 5 2701135 15.5 27.0 21.2 0.2 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_5_11195001 chrX_11195001 RAL-443 3037 chrX 12557132 12557164 chrX 12557228 12557229 4 87 3.5 2.0 2.8 1.1 97 chrX 12557132 intron CG43921 - chrX 12557180 intron CG43921 - chrX 12557229 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-443 3038 chrX 12570437 12570483 chrX 12570540 12570586 15 101 10.0 5.0 7.5 1.8 149 chrX 12570437 3` UTR CG11138 - chrX 12570512 3` UTR CG11138 - chrX 12570586 3` UTR CG11138 - chrX_15_12570001 chrX_12570001 RAL-443 3039 chrX 12600979 12601031 chrX 12601084 12601131 9 98 2.5 2.0 2.2 2.8 152 chrX 12600979 intron Sec16 + chrX 12601055 intron Sec16 + chrX 12601131 intron Sec16 + chrX_9_12600001 chrX_12600001 RAL-443 3040 chrX 12752259 12752310 chrX 12752366 12752396 13 101 5.0 3.0 4.0 2.6 137 chrX 12752259 5` UTR CR44619 + chrX 12752328 5` UTR CR44619 + chrX 12752396 5` UTR CR44619 + chrX_13_12750001 chrX_12750001 RAL-443 3041 chrX 12823178 12823229 chrX 12823271 12823326 5 96 5.5 3.5 4.5 0.9 148 chrX 12823178 intron Pde9 - chrX 12823252 intron Pde9 - chrX 12823326 intron Pde9 - chrX_5_12820001 chrX_12820001 RAL-443 3042 chrX 12837558 12837568 chrX 12837826 12837836 6 268 9.0 4.5 6.8 0.8 278 chrX 12837558 intron Pde9 - chrX 12837697 intron Pde9 - chrX 12837836 intron Pde9 - chrX_6_12835001 chrX_12835001 RAL-443 3043 chrX 12837571 12837594 chrX 12837825 12837862 13 266 4.0 4.5 4.2 2.5 291 chrX 12837571 intron Pde9 - chrX 12837716 intron Pde9 - chrX 12837862 intron Pde9 - chrX_13_12835001 chrX_12835001 RAL-443 3044 chrX 12858242 12858268 chrX 12858344 12858370 7 100 8.0 6.0 7.0 0.9 128 chrX 12858242 intron Pde9 - chrX 12858306 intron Pde9 - chrX 12858370 intron Pde9 - chrX_7_12855001 chrX_12855001 RAL-443 3045 chrX 12882123 12882162 chrX 12882228 12882237 5 98 2.5 0.5 1.5 2.0 114 chrX 12882123 intron Pde9 - chrX 12882180 intron Pde9 - chrX 12882237 intron Pde9 - chrX_5_12880001 chrX_12880001 RAL-443 3046 chrX 12930579 12930609 chrX 12937715 12937739 HMS-Beagle 12 7132 6.0 6.5 6.2 1.7 7160 chrX 12930579 intron fne + chrX 12934159 intron fne + chrX 12937739 intron fne + chrX_12_12930001 chrX_12930001 RAL-443 3047 chrX 11109417 11109417 chrX 12946233 12946233 6 1836816 16.5 28.0 22.2 0.3 1836816 chrX 11109417 intron Hsp60 + chrX 12027825 exon Usp7 - chrX 12946233 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-443 3048 chrX 8810799 8810799 chrX 12946234 12946234 4 4135435 19.5 28.0 23.8 0.2 4135435 chrX 8810799 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_4_10875001 chrX_10875001 RAL-443 3049 chrX 12977049 12977061 chrX 12977145 12977157 7 96 0.0 8.0 4.0 1.4 108 chrX 12977049 intergenic not near genes chrX 12977103 intergenic not near genes chrX 12977157 intergenic not near genes chrX_7_12975001 chrX_12975001 RAL-443 3050 chrX 13061335 13061374 chrX 13061466 13061500 5 128 1.0 0.5 0.8 2.8 165 chrX 13061335 intron rad + chrX 13061418 intron rad + chrX 13061500 intron rad + chrX_5_13060001 chrX_13060001 RAL-443 3051 chrX 13146575 13146631 chrX 13146683 13146739 19 106 4.5 2.5 3.5 4.2 164 chrX 13146575 intron CG32645 + chrX 13146657 intron CG32645 + chrX 13146739 intron CG32645 + chrX_19_13145001 chrX_13145001 RAL-443 3052 chrX 13147860 13147911 chrX 13147962 13147998 8 99 1.0 3.0 2.0 2.7 138 chrX 13147860 intron CG32645 + chrX 13147929 intron CG32645 + chrX 13147998 intron CG32645 + chrX_8_13145001 chrX_13145001 RAL-443 3053 chrX 13236888 13236901 chrX 13236972 13237006 8 102 0.0 7.5 3.8 1.7 118 chrX 13236888 intron mew - chrX 13236947 intron mew - chrX 13237006 intron mew - chrX_8_13235001 chrX_13235001 RAL-443 3054 chrX 13329305 13329309 chrX 13329415 13329418 4 111 3.0 1.0 2.0 1.3 113 chrX 13329305 intergenic IP3K2 + chrX 13329362 intergenic IP3K2 +,Jafrac1 + chrX 13329418 intergenic IP3K2 +,Jafrac1 + chrX_4_13325001 chrX_13325001 RAL-443 3055 chrX 13401464 13401520 chrX 13401836 13401861 jockey 16 368 3.5 3.5 3.5 3.6 397 chrX 13401464 intergenic CG1673 +,CG12725 - chrX 13401662 intergenic CG12725 -,CG1673 + chrX 13401861 3` UTR CG12725 - chrX_16_13400001 chrX_13400001 RAL-443 3056 chrX 13429446 13429489 chrX 13430615 13430657 jockey 16 1165 8.0 8.0 8.0 1.8 1211 chrX 13429446 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430657 intergenic not near genes chrX_16_13430001 chrX_13430001 RAL-443 3057 chrX 13463627 13463678 chrX 13469224 13469254 mdg3 25 5592 4.0 5.5 4.8 4.3 5627 chrX 13463627 intron Neto + chrX 13466440 intron Neto + chrX 13469254 intron Neto + chrX_25_13465001 chrX_13465001 RAL-443 3058 chrX 13843382 13843400 chrX 13843443 13843491 4 86 4.0 2.5 3.2 1.0 109 chrX 13843382 intron AMPdeam - chrX 13843436 intron AMPdeam - chrX 13843491 intron AMPdeam - chrX_4_13840001 chrX_13840001 RAL-443 3059 chrX 13875966 13875972 chrX 13876070 13876076 4 104 5.0 0.0 2.5 1.1 110 chrX 13875966 intron mamo - chrX 13876021 intron mamo - chrX 13876076 intron mamo - chrX_4_13875001 chrX_13875001 RAL-443 3060 chrX 13908778 13908804 chrX 13908875 13908891 4 94 3.5 6.0 4.8 0.7 113 chrX 13908778 intron mamo - chrX 13908834 intron mamo - chrX 13908891 intron mamo - chrX_4_13905001 chrX_13905001 RAL-443 3061 chrX 13934280 13934321 chrX 13934382 13934424 11 102 1.5 5.0 3.2 2.6 144 chrX 13934280 intron mamo - chrX 13934352 intron mamo - chrX 13934424 intron mamo - chrX_11_13930001 chrX_13930001 RAL-443 3062 chrX 13935496 13935523 chrX 13935598 13935619 6 99 4.0 9.5 6.8 0.8 123 chrX 13935496 intron mamo - chrX 13935558 intron mamo - chrX 13935619 intron mamo - chrX_6_13935001 chrX_13935001 RAL-443 3063 chrX 13937964 13938006 chrX 13941255 13941297 I-element 6 3290 2.0 2.5 2.2 1.9 3333 chrX 13937964 intron mamo - chrX 13939630 intron mamo - chrX 13941297 intron mamo - chrX_6_13935001 chrX_13935001 RAL-443 3064 chrX 13943292 13943302 chrX 13943393 13943413 4 108 0.0 5.0 2.5 1.1 121 chrX 13943292 intron mamo - chrX 13943352 intron mamo - chrX 13943413 intron mamo - chrX_4_13940001 chrX_13940001 RAL-443 3065 chrX 14105012 14105051 chrX 14114178 14114184 roo 10 9158 5.0 2.5 3.8 2.1 9172 chrX 14105012 intergenic not near genes chrX 14109598 intergenic not near genes chrX 14114184 5` UTR CR44657 + chrX_10_14105001 chrX_14105001 RAL-443 3066 chrX 14122598 14122626 chrX 14122694 14122722 5 95 1.0 3.5 2.2 1.6 124 chrX 14122598 intergenic not near genes chrX 14122660 intergenic not near genes chrX 14122722 intergenic not near genes chrX_5_14120001 chrX_14120001 RAL-443 3067 chrX 14131469 14131515 chrX 14131570 14131600 7 96 1.0 2.0 1.5 2.8 131 chrX 14131469 intergenic not near genes chrX 14131534 intergenic not near genes chrX 14131600 intergenic not near genes chrX_7_14130001 chrX_14130001 RAL-443 3068 chrX 14157576 14157597 chrX 14163253 14163274 297 8 5677 11.0 3.5 7.2 1.0 5698 chrX 14157576 intergenic not near genes chrX 14160425 intergenic not near genes chrX 14163274 intergenic not near genes chrX_8_14160001 chrX_14160001 RAL-443 3069 chrX 14167390 14167436 chrX 14167500 14167551 16 110 3.0 2.5 2.8 4.2 161 chrX 14167390 intergenic not near genes chrX 14167470 intergenic not near genes chrX 14167551 intergenic not near genes chrX_16_14165001 chrX_14165001 RAL-443 3070 chrX 14318307 14318352 chrX 14318466 14318510 14 157 2.5 1.0 1.8 5.0 203 chrX 14318307 intergenic not near genes chrX 14318408 intergenic not near genes chrX 14318510 intergenic not near genes chrX_14_14315001 chrX_14315001 RAL-443 3071 chrX 14331743 14331793 chrX 14332095 14332141 5 349 3.5 1.0 2.2 1.6 398 chrX 14331743 intron dpr8 + chrX 14331942 intron dpr8 + chrX 14332141 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-443 3072 chrX 14333265 14333284 chrX 14333367 14333376 4 96 0.5 0.0 0.2 3.3 111 chrX 14333265 intron dpr8 + chrX 14333320 intron dpr8 + chrX 14333376 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-443 3073 chrX 14370686 14370727 chrX 14370792 14370820 7 100 2.0 3.0 2.5 2.0 134 chrX 14370686 intron dpr8 + chrX 14370753 intron dpr8 + chrX 14370820 intron dpr8 + chrX_7_14370001 chrX_14370001 RAL-443 3074 chrX 14381398 14381412 chrX 14381567 14381581 6 171 4.5 4.0 4.2 1.2 183 chrX 14381398 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381581 intron dpr8 + chrX_6_14380001 chrX_14380001 RAL-443 3075 chrX 14404996 14405026 chrX 14405094 14405124 5 98 6.0 2.5 4.2 1.0 128 chrX 14404996 intron dpr8 + chrX 14405060 intron dpr8 + chrX 14405124 intron dpr8 + chrX_5_14405001 chrX_14405001 RAL-443 3076 chrX 14416293 14416328 chrX 14421080 14421114 F-element 13 4783 4.5 9.5 7.0 1.6 4821 chrX 14416293 intron dpr8 + chrX 14418704 intron dpr8 + chrX 14421114 intron dpr8 + chrX_13_14415001 chrX_14415001 RAL-443 3077 chrX 14484949 14484986 chrX 14485058 14485095 11 108 0.0 4.0 2.0 3.7 146 chrX 14484949 intergenic not near genes chrX 14485022 intergenic not near genes chrX 14485095 intergenic not near genes chrX_11_14485001 chrX_14485001 RAL-443 3078 chrX 14597726 14597752 chrX 14597811 14597847 7 93 6.5 2.5 4.5 1.3 121 chrX 14597726 intron CG9413 - chrX 14597786 intron CG9413 - chrX 14597847 intron CG9413 - chrX_7_14595001 chrX_14595001 RAL-443 3079 chrX 14636450 14636479 chrX 14641904 14641940 I-element 9 5452 6.5 5.0 5.8 1.3 5490 chrX 14636450 intron NetA - chrX 14639195 intron NetA - chrX 14641940 intron NetA - chrX_9_14635001 chrX_14635001 RAL-443 3080 chrX 14697992 14698012 chrX 14698113 14698122 6 118 10.0 3.5 6.8 0.8 130 chrX 14697992 intron NetB - chrX 14698057 intron NetB - chrX 14698122 intron NetB - chrX_6_14695001 chrX_14695001 RAL-443 3081 chrX 14714025 14714065 chrX 14714127 14714167 17 100 5.5 4.5 5.0 2.8 142 chrX 14714025 intron NetB - chrX 14714096 intron NetB - chrX 14714167 intron NetB - chrX_17_14710001 chrX_14710001 RAL-443 3082 chrX 14778017 14778054 chrX 14782834 14782871 Doc 12 4814 9.0 6.5 7.8 1.4 4854 chrX 14778017 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782871 intergenic Ag5r2 - chrX_12_14780001 chrX_14780001 RAL-443 3083 chrX 14806737 14806780 chrX 14806845 14806888 14 107 4.0 0.5 2.2 4.4 151 chrX 14806737 intron rut - chrX 14806812 intron rut - chrX 14806888 intron rut - chrX_14_14805001 chrX_14805001 RAL-443 3084 chrX 14813714 14813764 chrX 14813812 14813862 19 97 3.5 3.0 3.2 4.5 148 chrX 14813714 intron rut - chrX 14813788 intron rut - chrX 14813862 intron rut - chrX_19_14810001 chrX_14810001 RAL-443 3085 chrX 14818761 14818791 chrX 14823971 14824014 copia 5 5214 2.5 5.0 3.8 1.0 5253 chrX 14818761 intron rut - chrX 14821388 intron rut - chrX 14824014 intron rut - chrX_5_14820001 chrX_14820001 RAL-443 3086 chrX 14921940 14921955 chrX 14922338 14922353 6 395 16.0 6.0 11.0 0.5 413 chrX 14921940 intron,intron Flo2 +,CG9503 - chrX 14922146 intron,intron Flo2 +,CG9503 - chrX 14922353 intron,intron Flo2 +,CG9503 - chrX_6_14920001 chrX_14920001 RAL-443 3087 chrX 14921956 14921989 chrX 14922334 14922369 13 393 7.0 5.5 6.2 1.8 413 chrX 14921956 intron,intron Flo2 +,CG9503 - chrX 14922162 intron,intron Flo2 +,CG9503 - chrX 14922369 intron,intron Flo2 +,CG9503 - chrX_13_14920001 chrX_14920001 RAL-443 3088 chrX 14936839 14936889 chrX 14946116 14946166 roo 18 9277 5.5 5.5 5.5 2.8 9327 chrX 14936839 intron pdgy - chrX 14941502 intron pdgy - chrX 14946166 intron pdgy - chrX_18_14940001 chrX_14940001 RAL-443 3089 chrX 14950051 14950054 chrX 14950146 14950151 4 96 16.5 0.0 8.2 0.4 100 chrX 14950051 intron pdgy - chrX 14950101 intron pdgy - chrX 14950151 intron pdgy - chrX_4_14950001 chrX_14950001 RAL-443 3090 chrX 14968053 14968089 chrX 14968152 14968188 7 98 0.0 3.0 1.5 2.8 135 chrX 14968053 intron eag + chrX 14968120 intron eag + chrX 14968188 intron eag + chrX_7_14965001 chrX_14965001 RAL-443 3091 chrX 14981710 14981738 chrX 14981809 14981837 9 99 4.0 4.0 4.0 1.8 127 chrX 14981710 intron eag + chrX 14981774 intron eag + chrX 14981837 intron eag + chrX_9_14980001 chrX_14980001 RAL-443 3092 chrX 15200621 15200640 chrX 15200717 15200736 5 94 5.5 6.5 6.0 0.7 115 chrX 15200621 intergenic not near genes chrX 15200678 intergenic not near genes chrX 15200736 intergenic not near genes chrX_5_15200001 chrX_15200001 RAL-443 3093 chrX 15228477 15228522 chrX 15228743 15228788 13 265 5.0 3.0 4.0 2.6 311 chrX 15228477 intergenic CG9101 - chrX 15228632 intergenic CG9101 - chrX 15228788 3` UTR CG9101 - chrX_13_15225001 chrX_15225001 RAL-443 3094 chrX 15273699 15273730 chrX 15274879 15274895 1360 5 1172 1.5 4.0 2.8 1.3 1196 chrX 15273699 intergenic not near genes chrX 15274297 intergenic not near genes chrX 15274895 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-443 3095 chrX 15277624 15277668 chrX 15277729 15277744 5 97 3.5 2.0 2.8 1.3 120 chrX 15277624 intergenic not near genes chrX 15277684 intergenic not near genes chrX 15277744 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-443 3096 chrX 15369813 15369861 chrX 15369911 15369959 10 98 2.5 3.0 2.8 2.6 146 chrX 15369813 intron acj6 - chrX 15369886 intron acj6 - chrX 15369959 intron acj6 - chrX_10_15365001 chrX_15365001 RAL-443 3097 chrX 15413032 15413084 chrX 15417354 15417391 Juan 8 4319 4.0 2.0 3.0 2.0 4359 chrX 15413032 intron Cngl - chrX 15415212 intron Cngl - chrX 15417391 intron Cngl - chrX_8_15415001 chrX_15415001 RAL-443 3098 chrX 15426169 15426196 chrX 15426285 15426312 5 115 4.0 4.5 4.2 1.0 143 chrX 15426169 intron Cngl - chrX 15426240 intron Cngl - chrX 15426312 intron Cngl - chrX_5_15425001 chrX_15425001 RAL-443 3099 chrX 15435695 15435702 chrX 15436117 15436155 rover 5 447 0.0 7.0 3.5 1.1 460 chrX 15435695 intron Cngl - chrX 15435925 intron Cngl - chrX 15436155 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-443 3100 chrX 15589419 15589461 chrX 15589613 15589623 4 185 5.5 4.5 5.0 0.7 204 chrX 15589419 intron CG9220 - chrX 15589521 intron CG9220 - chrX 15589623 intron CG9220 - chrX_4_15585001 chrX_15585001 RAL-443 3101 chrX 4275590 4275590 chrX 15627327 15627327 4 11351737 4.0 22.0 13.0 0.3 11351737 chrX 4275590 3` UTR CR45483 - chrX 9951458 intergenic not near genes chrX 15627327 intron sog - chrX_4_9950001 chrX_9950001 RAL-443 3102 chrX 15678016 15678061 chrX 15678114 15678158 9 95 0.5 1.0 0.8 5.0 142 chrX 15678016 intergenic CG12708 + chrX 15678087 intergenic CG12708 + chrX 15678158 intergenic CG12708 + chrX_9_15675001 chrX_15675001 RAL-443 3103 chrX 15898420 15898451 chrX 15898594 15898616 11 172 7.0 4.5 5.8 1.6 196 chrX 15898420 intron shi + chrX 15898518 intron shi + chrX 15898616 intron shi + chrX_11_15895001 chrX_15895001 RAL-443 3104 chrX 15939252 15939300 chrX 15939357 15939405 9 105 3.5 5.0 4.2 1.7 153 chrX 15939252 intron Stim - chrX 15939328 intron Stim - chrX 15939405 intron Stim - chrX_9_15935001 chrX_15935001 RAL-443 3105 chrX 16100548 16100588 chrX 16100635 16100688 6 86 4.5 2.0 3.2 1.4 140 chrX 16100548 intron,intron CG42353 -,CG42354 - chrX 16100618 intron,intron CG42353 -,CG42354 - chrX 16100688 intron,intron CG42353 -,CG42354 - chrX_6_16100001 chrX_16100001 RAL-443 3106 chrX 16222777 16222802 chrX 16231147 16231172 roo 6 8370 1.5 5.5 3.5 1.3 8395 chrX 16222777 intergenic not near genes chrX 16226974 intergenic not near genes chrX 16231172 intergenic not near genes chrX_6_16225001 chrX_16225001 RAL-443 3107 chrX 16295505 16295531 chrX 16295609 16295635 10 103 8.0 0.0 4.0 2.0 130 chrX 16295505 intron CG9911 - chrX 16295570 intron CG9911 - chrX 16295635 intron CG9911 - chrX_10_16295001 chrX_16295001 RAL-443 3108 chrX 16340649 16340688 chrX 16349824 16349865 roo 16 9172 10.0 8.5 9.2 1.6 9216 chrX 16340649 intergenic Dsp1 + chrX 16345257 intergenic not near genes chrX 16349865 intergenic sl + chrX_16_16345001 chrX_16345001 RAL-443 3109 chrX 16404333 16404384 chrX 16404449 16404489 13 114 7.0 4.5 5.8 1.9 156 chrX 16404333 intron CG9981 - chrX 16404411 intron CG9981 - chrX 16404489 intron CG9981 - chrX_13_16400001 chrX_16400001 RAL-443 3110 chrX 16492625 16492678 chrX 16498222 16498222 mdg3 27 5593 4.0 4.0 4.0 5.4 5597 chrX 16492625 intron para - chrX 16495424 intron para - chrX 16498222 intron para - chrX_27_16495001 chrX_16495001 RAL-443 3111 chrX 16570860 16570889 chrX 16570950 16570987 7 97 5.5 3.0 4.2 1.3 127 chrX 16570860 intron CanA-14F - chrX 16570924 intron CanA-14F - chrX 16570987 intron CanA-14F - chrX_7_16570001 chrX_16570001 RAL-443 3112 chrX 16623488 16623505 chrX 16623571 16623582 4 81 7.5 1.0 4.2 0.8 94 chrX 16623488 intergenic not near genes chrX 16623535 intergenic Rok - chrX 16623582 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-443 3113 chrX 16621994 16622004 chrX 16624377 16624397 4 2386 10.5 42.5 26.5 0.1 2403 chrX 16621994 intergenic CG9782 - chrX 16623196 intergenic not near genes chrX 16624397 intron Rok - chrX_4_16620001 chrX_16620001 RAL-443 3114 chrX 16764718 16764732 chrX 16764815 16764829 5 97 5.0 0.5 2.8 1.3 111 chrX 16764718 intron if - chrX 16764774 intron if - chrX 16764829 intron if - chrX_5_16760001 chrX_16760001 RAL-443 3115 chrX 16785272 16785301 chrX 16785396 16785425 12 124 7.0 8.0 7.5 1.4 153 chrX 16785272 3` UTR CG9609 - chrX 16785348 3` UTR CG9609 - chrX 16785425 3` UTR CG9609 - chrX_12_16785001 chrX_16785001 RAL-443 3116 chrX 16821225 16821265 chrX 16821319 16821358 6 98 3.5 0.0 1.8 2.1 133 chrX 16821225 intron CG4829 + chrX 16821292 intron CG4829 + chrX 16821358 intron CG4829 + chrX_6_16820001 chrX_16820001 RAL-443 3117 chrX 16870059 16870098 chrX 16870161 16870201 10 99 2.0 3.5 2.8 2.6 142 chrX 16870059 intron CG13003 - chrX 16870130 intron CG13003 - chrX 16870201 intron CG13003 - chrX_10_16870001 chrX_16870001 RAL-443 3118 chrX 16936007 16936030 chrX 16936429 16936463 jockey 6 432 0.0 3.0 1.5 2.4 456 chrX 16936007 intron CG4928 + chrX 16936235 intron CG4928 + chrX 16936463 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-443 3119 chrX 16951301 16951353 chrX 16951401 16951417 4 81 2.5 2.5 2.5 1.1 116 chrX 16951301 exon RhoGAP15B + chrX 16951359 exon RhoGAP15B + chrX 16951417 exon RhoGAP15B + chrX_4_16950001 chrX_16950001 RAL-443 3120 chrX 16983076 16983076 chrX 19404963 19404963 4 2421887 19.5 11.0 15.2 0.2 2421887 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404963 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-443 3121 chrX 17011959 17011999 chrX 17012054 17012081 5 84 1.0 4.0 2.5 1.4 122 chrX 17011959 intron CG45002 - chrX 17012020 intron CG45002 - chrX 17012081 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-443 3122 chrX 17088191 17088200 chrX 17088779 17088813 4 607 2.5 6.0 4.2 0.8 622 chrX 17088191 intergenic not near genes chrX 17088502 intergenic not near genes chrX 17088813 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-443 3123 chrX 17110310 17110335 chrX 17110439 17110477 7 140 0.0 4.5 2.2 2.2 167 chrX 17110310 intron CG5004 + chrX 17110394 intron CG5004 + chrX 17110477 intron CG5004 + chrX_7_17110001 chrX_17110001 RAL-443 3124 chrX 17205829 17205856 chrX 17205939 17205966 13 110 8.0 7.0 7.5 1.5 137 chrX 17205829 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205966 intergenic CG32564 + chrX_13_17205001 chrX_17205001 RAL-443 3125 chrX 17221816 17221861 chrX 17221922 17221937 12 101 2.5 8.0 5.2 1.9 121 chrX 17221816 intron CG5172 + chrX 17221876 intron CG5172 + chrX 17221937 intron CG5172 + chrX_12_17220001 chrX_17220001 RAL-443 3126 chrX 17237517 17237535 chrX 17237621 17237628 5 102 2.0 3.0 2.5 1.4 111 chrX 17237517 intron f + chrX 17237572 intron f + chrX 17237628 intron f + chrX_5_17235001 chrX_17235001 RAL-443 3127 chrX 17282865 17282896 chrX 17282956 17282959 6 88 9.0 0.0 4.5 1.1 94 chrX 17282865 intron CG5445 + chrX 17282912 5` UTR CG5445 + chrX 17282959 5` UTR CG5445 + chrX_6_17280001 chrX_17280001 RAL-443 3128 chrX 17290049 17290097 chrX 17290142 17290193 16 95 4.0 6.0 5.0 2.7 144 chrX 17290049 intron,intron CG5445 +,Fim - chrX 17290121 intron,intron CG5445 +,Fim - chrX 17290193 intron,intron CG5445 +,Fim - chrX_16_17290001 chrX_17290001 RAL-443 3129 chrX 17325741 17325741 chrX 17325839 17325874 4 124 0.0 10.0 5.0 0.7 133 chrX 17325741 intergenic not near genes chrX 17325808 intergenic not near genes chrX 17325874 intergenic not near genes chrX_4_17325001 chrX_17325001 RAL-443 3130 chrX 17352576 17352614 chrX 17352690 17352737 13 120 0.5 6.5 3.5 2.9 161 chrX 17352576 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352737 intergenic not near genes chrX_13_17350001 chrX_17350001 RAL-443 3131 chrX 17427032 17427077 chrX 17427139 17427184 11 104 3.5 8.0 5.8 1.6 152 chrX 17427032 intron,intron CG12994 -,CG5613 + chrX 17427108 intron,intron CG12994 -,CG5613 + chrX 17427184 intron,intron CG12994 -,CG5613 + chrX_11_17425001 chrX_17425001 RAL-443 3132 chrX 17434429 17434446 chrX 17434542 17434559 6 113 4.0 1.0 2.5 1.7 130 chrX 17434429 intron CG12994 - chrX 17434494 intron CG12994 - chrX 17434559 intron CG12994 - chrX_6_17430001 chrX_17430001 RAL-443 3133 chrX 17435737 17435784 chrX 17435833 17435870 17 95 9.0 7.5 8.2 1.8 133 chrX 17435737 intron CG12994 - chrX 17435804 intron CG12994 - chrX 17435870 intron CG12994 - chrX_17_17435001 chrX_17435001 RAL-443 3134 chrX 17492029 17492035 chrX 17492380 17492388 4 352 9.0 5.0 7.0 0.5 359 chrX 17492029 intron CG43658 - chrX 17492208 intron CG43658 - chrX 17492388 intron CG43658 - chrX_4_17490001 chrX_17490001 RAL-443 3135 chrX 17492039 17492072 chrX 17492372 17492425 8 347 3.5 4.5 4.0 1.6 386 chrX 17492039 intron CG43658 - chrX 17492232 intron CG43658 - chrX 17492425 intron CG43658 - chrX_8_17490001 chrX_17490001 RAL-443 3136 chrX 17502330 17502372 chrX 17502430 17502462 15 98 3.5 3.5 3.5 3.3 132 chrX 17502330 intron CG43658 - chrX 17502396 intron CG43658 - chrX 17502462 intron CG43658 - chrX_15_17500001 chrX_17500001 RAL-443 3137 chrX 17545491 17545512 chrX 17545570 17545584 5 85 1.0 4.5 2.8 1.3 93 chrX 17545491 intron CG43658 - chrX 17545538 intron CG43658 - chrX 17545584 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-443 3138 chrX 17685448 17685472 chrX 17685546 17685575 4 102 0.5 5.0 2.8 1.1 127 chrX 17685448 intron chas - chrX 17685512 intron chas - chrX 17685575 intron chas - chrX_4_17685001 chrX_17685001 RAL-443 3139 chrX 17741320 17741368 chrX 17741486 17741534 5 160 0.0 5.0 2.5 1.4 214 chrX 17741320 intron CG42684 + chrX 17741427 intron CG42684 + chrX 17741534 intron CG42684 + chrX_5_17740001 chrX_17740001 RAL-443 3140 chrX 17782203 17782241 chrX 17782321 17782359 10 115 4.5 4.5 4.5 1.8 156 chrX 17782203 intergenic not near genes chrX 17782281 intergenic not near genes chrX 17782359 intergenic not near genes chrX_10_17780001 chrX_17780001 RAL-443 3141 chrX 18003432 18003479 chrX 18003534 18003580 14 97 6.0 2.0 4.0 2.8 148 chrX 18003432 intron Sh - chrX 18003506 intron Sh - chrX 18003580 intron Sh - chrX_14_18000001 chrX_18000001 RAL-443 3142 chrX 18122803 18122850 chrX 18122899 18122946 16 94 5.5 10.0 7.8 1.8 143 chrX 18122803 5` UTR CR45606 + chrX 18122874 5` UTR CR45606 + chrX 18122946 intergenic CR45606 + chrX_16_18120001 chrX_18120001 RAL-443 3143 chrX 18148617 18148622 chrX 18148740 18148745 4 123 3.0 1.5 2.2 1.2 128 chrX 18148617 intergenic not near genes chrX 18148681 intergenic not near genes chrX 18148745 intergenic not near genes chrX_4_18145001 chrX_18145001 RAL-443 3144 chrX 18429477 18429525 chrX 18434808 18434856 Transpac 15 5326 4.0 6.5 5.2 2.4 5379 chrX 18429477 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434856 intergenic not near genes chrX_15_18430001 chrX_18430001 RAL-443 3145 chrX 18455221 18455242 chrX 18455321 18455342 10 98 4.0 4.0 4.0 2.0 121 chrX 18455221 intron CG32547 - chrX 18455282 intron CG32547 - chrX 18455342 intron CG32547 - chrX_10_18455001 chrX_18455001 RAL-443 3146 chrX 18495962 18496012 chrX 18496073 18496123 22 109 8.0 4.5 6.2 3.1 161 chrX 18495962 3` UTR GalNAc-T2 - chrX 18496042 3` UTR GalNAc-T2 - chrX 18496123 3` UTR GalNAc-T2 - chrX_22_18495001 chrX_18495001 RAL-443 3147 chrX 18529376 18529399 chrX 18529472 18529495 9 94 3.5 7.0 5.2 1.5 119 chrX 18529376 intron,3` UTR Bx +,CG15047 + chrX 18529436 intron,3` UTR Bx +,CG15047 + chrX 18529495 intron,3` UTR Bx +,CG15047 + chrX_9_18525001 chrX_18525001 RAL-443 3148 chrX 18555367 18555412 chrX 18556908 18556949 transib2 10 1536 3.0 9.5 6.2 1.4 1582 chrX 18555367 intron Bx + chrX 18556158 intron Bx + chrX 18556949 intron Bx + chrX_10_18555001 chrX_18555001 RAL-443 3149 chrX 12946233 12946235 chrX 18572525 18572525 8 5626290 27.5 22.5 25.0 0.3 5626292 chrX 12946233 3` UTR fne + chrX 15759379 intron Graf - chrX 18572525 intergenic not near genes chrX_8_15755001 chrX_15755001 RAL-443 3150 chrX 18582151 18582167 chrX 18582243 18582259 4 95 2.0 4.0 3.0 1.0 108 chrX 18582151 intergenic not near genes chrX 18582205 intergenic not near genes chrX 18582259 intergenic not near genes chrX_4_18580001 chrX_18580001 RAL-443 3151 chrX 18607286 18607300 chrX 18607553 18607712 7 278 64.5 54.0 59.2 0.1 426 chrX 18607286 exon CG15040 - chrX 18607499 exon CG15040 - chrX 18607712 exon CG15040 - chrX_7_18605001 chrX_18605001 RAL-443 3152 chrX 18644998 18645049 chrX 18645115 18645141 13 113 2.0 2.0 2.0 4.3 143 chrX 18644998 intron Rip11 - chrX 18645070 intron Rip11 - chrX 18645141 intron Rip11 - chrX_13_18645001 chrX_18645001 RAL-443 3153 chrX 18698827 18698878 chrX 18698964 18699015 17 136 4.5 6.5 5.5 2.6 188 chrX 18698827 intergenic not near genes chrX 18698921 intergenic not near genes chrX 18699015 intergenic not near genes chrX_17_18695001 chrX_18695001 RAL-443 3154 chrX 18819589 18819636 chrX 18819771 18819807 7 183 38.5 28.5 33.5 0.2 218 chrX 18819589 intron CG42450 + chrX 18819698 intron CG42450 + chrX 18819807 5` UTR CG42450 + chrX_7_18815001 chrX_18815001 RAL-443 3155 chrX 18910368 18910412 chrX 18910478 18910497 4 94 0.5 1.0 0.8 2.2 129 chrX 18910368 3` UTR CG7378 + chrX 18910432 3` UTR CG7378 + chrX 18910497 3` UTR CG7378 + chrX_4_18910001 chrX_18910001 RAL-443 3156 chrX 18926520 18926543 chrX 18926632 18926645 5 108 4.0 0.0 2.0 1.7 125 chrX 18926520 intergenic not near genes chrX 18926582 intergenic not near genes chrX 18926645 intergenic not near genes chrX_5_18925001 chrX_18925001 RAL-443 3157 chrX 18939701 18939751 chrX 18940018 18940067 5 316 2.0 3.0 2.5 1.4 366 chrX 18939701 intron CG43759 + chrX 18939884 intron CG43759 + chrX 18940067 intron CG43759 + chrX_5_18935001 chrX_18935001 RAL-443 3158 chrX 18957054 18957101 chrX 18965737 18965743 roo 15 8678 3.0 9.5 6.2 2.1 8689 chrX 18957054 intron CG43759 + chrX 18961398 intron CG43759 + chrX 18965743 intron CG43759 + chrX_15_18960001 chrX_18960001 RAL-443 3159 chrX 19020599 19020623 chrX 19020685 19020721 14 96 0.5 7.0 3.8 2.9 122 chrX 19020599 intron CG43759 + chrX 19020660 intron CG43759 + chrX 19020721 intron CG43759 + chrX_14_19020001 chrX_19020001 RAL-443 3160 chrX 19035031 19035049 chrX 19035417 19035435 6 385 2.5 6.5 4.5 1.1 404 chrX 19035031 intergenic not near genes chrX 19035233 intergenic not near genes chrX 19035435 intergenic not near genes chrX_6_19035001 chrX_19035001 RAL-443 3161 chrX 19060392 19060405 chrX 19065196 19065209 Doc 5 4804 10.0 6.0 8.0 0.6 4817 chrX 19060392 intron CG14190 + chrX 19062800 intron CG14190 + chrX 19065209 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-443 3162 chrX 19060407 19060437 chrX 19065191 19065241 Doc 7 4800 4.5 5.5 5.0 1.2 4834 chrX 19060407 intron CG14190 + chrX 19062824 intron CG14190 + chrX 19065241 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-443 3163 chrX 19073664 19073695 chrX 19073771 19073800 13 104 8.0 6.0 7.0 1.6 136 chrX 19073664 intergenic not near genes chrX 19073732 intergenic not near genes chrX 19073800 intergenic not near genes chrX_13_19070001 chrX_19070001 RAL-443 3164 chrX 19076364 19076407 chrX 19076529 19076569 12 162 4.0 2.5 3.2 2.9 205 chrX 19076364 intergenic not near genes chrX 19076466 intergenic not near genes chrX 19076569 intergenic not near genes chrX_12_19075001 chrX_19075001 RAL-443 3165 chrX 19080306 19080358 chrX 19080432 19080468 17 124 6.5 6.5 6.5 2.3 162 chrX 19080306 intergenic not near genes chrX 19080387 intergenic not near genes chrX 19080468 intergenic not near genes chrX_17_19080001 chrX_19080001 RAL-443 3166 chrX 19089974 19089995 chrX 19090083 19090105 5 110 4.5 4.0 4.2 1.0 131 chrX 19089974 intergenic not near genes chrX 19090040 intergenic not near genes chrX 19090105 intergenic not near genes chrX_5_19090001 chrX_19090001 RAL-443 3167 chrX 19099633 19099682 chrX 19099736 19099785 14 102 5.0 2.0 3.5 3.1 152 chrX 19099633 intergenic not near genes chrX 19099709 intergenic not near genes chrX 19099785 intergenic not near genes chrX_14_19095001 chrX_19095001 RAL-443 3168 chrX 19124428 19124464 chrX 19124527 19124568 9 107 3.5 4.5 4.0 1.8 140 chrX 19124428 intergenic CG15882 - chrX 19124498 intergenic CG15882 - chrX 19124568 intergenic CG15882 -,tgy - chrX_9_19120001 chrX_19120001 RAL-443 3169 chrX 19136555 19136584 chrX 19143474 19143523 412 7 6921 3.5 1.0 2.2 2.2 6968 chrX 19136555 intergenic not near genes chrX 19140039 intergenic not near genes chrX 19143523 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-443 3170 chrX 19147622 19147667 chrX 19147814 19147859 15 189 2.0 3.5 2.8 3.9 237 chrX 19147622 intron RhoGAP18B - chrX 19147740 intron RhoGAP18B - chrX 19147859 intron RhoGAP18B - chrX_15_19145001 chrX_19145001 RAL-443 3171 chrX 19182027 19182042 chrX 19182159 19182174 4 132 2.5 9.5 6.0 0.6 147 chrX 19182027 intergenic CG7453 + chrX 19182100 intergenic CG7453 + chrX 19182174 intergenic CG7453 + chrX_4_19180001 chrX_19180001 RAL-443 3172 chrX 19352466 19352470 chrX 19370479 19370499 6 18026 19.5 2.5 11.0 0.5 18033 chrX 19352466 intergenic not near genes chrX 19361482 intron kek5 + chrX 19370499 intron kek5 + chrX_6_19360001 chrX_19360001 RAL-443 3173 chrX 19352474 19352505 chrX 19370478 19370530 7 18018 18.5 2.5 10.5 0.6 18056 chrX 19352474 intergenic not near genes chrX 19361502 intron kek5 + chrX 19370530 intron kek5 + chrX_7_19360001 chrX_19360001 RAL-443 3174 chrX 19356970 19357022 chrX 19358431 19358501 NOF 16 1457 5.5 0.5 3.0 4.0 1531 chrX 19356970 intron kek5 + chrX 19357736 intron kek5 + chrX 19358501 intron kek5 + chrX_16_19355001 chrX_19355001 RAL-443 3175 chrX 19380138 19380180 chrX 19380399 19380441 pogo 14 259 4.5 7.5 6.0 2.0 303 chrX 19380138 intron kek5 + chrX 19380290 intron kek5 + chrX 19380441 intron kek5 + chrX_14_19380001 chrX_19380001 RAL-443 3176 chrX 16983076 16983077 chrX 19404963 19404965 4 2421887 19.5 11.0 15.2 0.2 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-443 3177 chrX 19461126 19461175 chrX 19461238 19461291 7 113 3.5 3.5 3.5 1.6 165 chrX 19461126 intron kek5 + chrX 19461208 intron kek5 + chrX 19461291 intron kek5 + chrX_7_19460001 chrX_19460001 RAL-443 3178 chrX 19472109 19472130 chrX 19472699 19472705 jockey 4 586 5.0 5.5 5.2 0.6 596 chrX 19472109 intergenic kek5 + chrX 19472407 intergenic kek5 + chrX 19472705 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-443 3179 chrX 19500727 19500751 chrX 19500807 19500858 16 98 1.5 4.0 2.8 4.2 131 chrX 19500727 intron,intron CG14200 +,Pfrx + chrX 19500792 intron,intron CG14200 +,Pfrx + chrX 19500858 intron,intron CG14200 +,Pfrx + chrX_16_19500001 chrX_19500001 RAL-443 3180 chrX 19541429 19541441 chrX 19541529 19541541 5 98 4.0 7.5 5.8 0.7 112 chrX 19541429 intron CG32532 - chrX 19541485 intron CG32532 - chrX 19541541 intron CG32532 - chrX_5_19540001 chrX_19540001 RAL-443 3181 chrX 19560657 19560684 chrX 19560776 19560803 8 118 5.5 10.5 8.0 0.9 146 chrX 19560657 3` UTR Grip84 - chrX 19560730 3` UTR Grip84 - chrX 19560803 3` UTR Grip84 - chrX_8_19560001 chrX_19560001 RAL-443 3182 chrX 19576543 19576592 chrX 19576637 19576658 7 89 1.0 1.5 1.2 3.2 115 chrX 19576543 intron Tao - chrX 19576600 intron Tao - chrX 19576658 intron Tao - chrX_7_19575001 chrX_19575001 RAL-443 3183 chrX 19593940 19593969 chrX 19594045 19594069 11 103 5.0 4.5 4.8 1.9 129 chrX 19593940 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594069 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-443 3184 chrX 19595711 19595742 chrX 19595820 19595851 13 107 3.5 7.5 5.5 2.0 140 chrX 19595711 intergenic CG14205 + chrX 19595781 intergenic CG14205 + chrX 19595851 intergenic CG14205 + chrX_13_19595001 chrX_19595001 RAL-443 3185 chrX 19710058 19710099 chrX 19711863 19711885 S-element 8 1799 1.5 5.0 3.2 1.9 1827 chrX 19710058 intron meso18E - chrX 19710972 intron meso18E - chrX 19711885 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-443 3186 chrX 19740413 19740423 chrX 19740544 19740556 5 132 5.5 1.0 3.2 1.2 143 chrX 19740413 3` UTR CG14234 + chrX 19740484 intergenic CG14234 +,CoVIb - chrX 19740556 3` UTR CoVIb - chrX_5_19740001 chrX_19740001 RAL-443 3187 chrX 19740424 19740460 chrX 19740542 19740593 5 130 3.5 0.5 2.0 1.7 169 chrX 19740424 3` UTR CG14234 + chrX 19740508 intergenic CoVIb -,CG14234 + chrX 19740593 3` UTR CoVIb - chrX_5_19740001 chrX_19740001 RAL-443 3188 chrX 19762580 19762604 chrX 19762680 19762697 9 97 2.5 5.5 4.0 1.8 117 chrX 19762580 5` UTR CG12702 - chrX 19762638 5` UTR CG12702 - chrX 19762697 5` UTR CG12702 - chrX_9_19760001 chrX_19760001 RAL-443 3189 chrX 19822816 19822862 chrX 19823000 19823049 6 186 4.0 7.0 5.5 0.9 233 chrX 19822816 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823049 intergenic skpE - chrX_6_19820001 chrX_19820001 RAL-443 3190 chrX 19827333 19827383 chrX 19827431 19827481 16 96 7.5 4.0 5.8 2.4 148 chrX 19827333 intergenic not near genes chrX 19827407 intergenic not near genes chrX 19827481 intergenic not near genes chrX_16_19825001 chrX_19825001 RAL-443 3191 chrX 19838484 19838526 chrX 19838582 19838590 6 86 4.0 2.5 3.2 1.4 106 chrX 19838484 intron pico - chrX 19838537 intron pico - chrX 19838590 intron pico - chrX_6_19835001 chrX_19835001 RAL-443 3192 chrX 19880370 19880392 chrX 19880509 19880531 8 139 4.5 4.0 4.2 1.5 161 chrX 19880370 intron Hers + chrX 19880450 intron Hers + chrX 19880531 intron Hers + chrX_8_19880001 chrX_19880001 RAL-443 3193 chrX 19881434 19881483 chrX 19881535 19881575 18 97 7.0 4.0 5.5 2.8 141 chrX 19881434 intron Hers + chrX 19881504 intron Hers + chrX 19881575 intron Hers + chrX_18_19880001 chrX_19880001 RAL-443 3194 chrX 19981981 19982024 chrX 19982089 19982132 9 108 3.0 2.0 2.5 2.6 151 chrX 19981981 intergenic not near genes chrX 19982056 intergenic not near genes chrX 19982132 intergenic not near genes chrX_9_19980001 chrX_19980001 RAL-443 3195 chrX 19983846 19983894 chrX 19983946 19983994 18 98 3.0 2.0 2.5 5.1 148 chrX 19983846 intergenic not near genes chrX 19983920 intergenic not near genes chrX 19983994 intergenic not near genes chrX_18_19980001 chrX_19980001 RAL-443 3196 chrX 20105201 20105225 chrX 20105300 20105327 5 101 24.0 24.5 24.2 0.2 126 chrX 20105201 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105327 intergenic not near genes chrX_5_20105001 chrX_20105001 RAL-443 3197 chrX 20125375 20125397 chrX 20125477 20125499 7 102 0.5 9.0 4.8 1.2 124 chrX 20125375 intergenic CG34331 + chrX 20125437 intergenic CG34331 + chrX 20125499 intergenic CG34331 + chrX_7_20125001 chrX_20125001 RAL-443 3198 chrX 20126888 20126908 chrX 20126975 20126977 4 87 3.0 0.0 1.5 1.6 89 chrX 20126888 intergenic not near genes chrX 20126932 intergenic not near genes chrX 20126977 intergenic not near genes chrX_4_20125001 chrX_20125001 RAL-443 3199 chrX 20271484 20271524 chrX 20271596 20271636 10 112 4.0 0.0 2.0 3.3 152 chrX 20271484 intergenic not near genes chrX 20271560 intergenic not near genes chrX 20271636 intergenic not near genes chrX_10_20270001 chrX_20270001 RAL-443 3200 chrX 20312873 20312909 chrX 20312959 20313007 11 96 3.5 5.0 4.2 2.1 134 chrX 20312873 intron CG1504 - chrX 20312940 intron CG1504 - chrX 20313007 intron CG1504 - chrX_11_20310001 chrX_20310001 RAL-443 3201 chrX 20320093 20320121 chrX 20320517 20320545 11 423 12.0 6.0 9.0 1.1 452 chrX 20320093 intron CG1504 - chrX 20320319 intron CG1504 - chrX 20320545 intron CG1504 - chrX_11_20320001 chrX_20320001 RAL-443 3202 chrX 20320124 20320145 chrX 20320513 20320569 10 417 5.5 5.0 5.2 1.6 445 chrX 20320124 intron CG1504 - chrX 20320346 intron CG1504 - chrX 20320569 intron CG1504 - chrX_10_20320001 chrX_20320001 RAL-443 3203 chrX 20369312 20369341 chrX 20369405 20369445 8 102 1.5 4.0 2.8 2.1 133 chrX 20369312 intergenic not near genes chrX 20369378 intergenic not near genes chrX 20369445 intergenic not near genes chrX_8_20365001 chrX_20365001 RAL-443 3204 chrX 20443168 20443196 chrX 20443254 20443292 6 93 6.0 6.5 6.2 0.8 124 chrX 20443168 exon CG1695 + chrX 20443230 intron CG1695 + chrX 20443292 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-443 3205 chrX 20448415 20448466 chrX 20448519 20448571 6 103 3.0 0.0 1.5 2.4 156 chrX 20448415 intergenic not near genes chrX 20448493 intergenic not near genes chrX 20448571 intergenic not near genes chrX_6_20445001 chrX_20445001 RAL-443 3206 chrX 20468006 20468026 chrX 20468102 20468110 7 101 8.0 0.0 4.0 1.4 104 chrX 20468006 intron GstT3 + chrX 20468058 intron GstT3 + chrX 20468110 intron GstT3 + chrX_7_20465001 chrX_20465001 RAL-443 3207 chrX 20493910 20493928 chrX 20494082 20494109 9 179 0.0 8.0 4.0 1.8 199 chrX 20493910 intron RhoGAP19D - chrX 20494010 intron RhoGAP19D - chrX 20494109 intron RhoGAP19D - chrX_9_20490001 chrX_20490001 RAL-443 3208 chrX 20499141 20499184 chrX 20499244 20499250 7 91 5.5 4.5 5.0 1.2 109 chrX 20499141 intron RhoGAP19D - chrX 20499196 intron RhoGAP19D - chrX 20499250 intron RhoGAP19D - chrX_7_20495001 chrX_20495001 RAL-443 3209 chrX 20504106 20504157 chrX 20505647 20505698 transib2 13 1540 10.5 3.0 6.8 1.7 1592 chrX 20504106 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505698 intron RhoGAP19D - chrX_13_20500001 chrX_20500001 RAL-443 3210 chrX 20528579 20528631 chrX 20528947 20528999 10 363 5.5 7.0 6.2 1.4 420 chrX 20528579 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20528999 intergenic not near genes chrX_10_20525001 chrX_20525001 RAL-443 3211 chrX 20531676 20531684 chrX 20531786 20531794 5 110 6.0 6.5 6.2 0.7 118 chrX 20531676 intergenic not near genes chrX 20531735 intergenic not near genes chrX 20531794 intergenic not near genes chrX_5_20530001 chrX_20530001 RAL-443 3212 chrX 20546548 20546565 chrX 20546734 20546751 7 185 1.0 6.5 3.8 1.5 203 chrX 20546548 intron RunxB + chrX 20546650 intron RunxB + chrX 20546751 intron RunxB + chrX_7_20545001 chrX_20545001 RAL-443 3213 chrX 20570749 20570796 chrX 20570854 20570901 10 104 3.0 5.5 4.2 1.9 152 chrX 20570749 intergenic not near genes chrX 20570825 intergenic not near genes chrX 20570901 intergenic not near genes chrX_10_20570001 chrX_20570001 RAL-443 3214 chrX 20575137 20575181 chrX 20575235 20575279 10 91 3.0 0.5 1.8 3.6 142 chrX 20575137 intergenic CG42580 + chrX 20575208 intergenic not near genes chrX 20575279 intergenic not near genes chrX_10_20575001 chrX_20575001 RAL-443 3215 chrX 20578060 20578108 chrX 20578159 20578165 8 90 1.5 2.0 1.8 2.9 105 chrX 20578060 intergenic not near genes chrX 20578112 intergenic not near genes chrX 20578165 intergenic not near genes chrX_8_20575001 chrX_20575001 RAL-443 3216 chrX 20710412 20710433 chrX 20710509 20710530 7 97 2.0 0.5 1.2 3.2 118 chrX 20710412 intergenic not near genes chrX 20710471 intergenic not near genes chrX 20710530 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-443 3217 chrX 20741559 20741598 chrX 20741655 20741670 9 91 7.5 0.5 4.0 1.8 111 chrX 20741559 intergenic not near genes chrX 20741614 intergenic not near genes chrX 20741670 intergenic not near genes chrX_9_20740001 chrX_20740001 RAL-443 3218 chrX 20836706 20836721 chrX 20844328 20844332 roo 4 7619 9.5 5.0 7.2 0.5 7626 chrX 20836706 intron shakB - chrX 20840519 intron shakB - chrX 20844332 intron shakB - chrX_4_20840001 chrX_20840001 RAL-443 3219 chrX 20836735 20836750 chrX 20844327 20844352 roo 5 7612 5.0 5.0 5.0 0.8 7617 chrX 20836735 intron shakB - chrX 20840544 intron shakB - chrX 20844352 intron shakB - chrX_5_20840001 chrX_20840001 RAL-443 3220 chrX 20940703 20940747 chrX 20942189 20942222 hobo 18 1483 10.5 1.0 5.8 2.6 1519 chrX 20940703 intergenic not near genes chrX 20941462 intergenic not near genes chrX 20942222 intergenic not near genes chrX_18_20940001 chrX_20940001 RAL-443 3221 chrX 20947823 20947872 chrX 20947935 20947954 12 101 2.5 4.5 3.5 2.7 131 chrX 20947823 intergenic not near genes chrX 20947888 intergenic not near genes chrX 20947954 intergenic not near genes chrX_12_20945001 chrX_20945001 RAL-443 3222 chrX 20957008 20957014 chrX 20962425 20962476 I-element 5 5452 0.0 4.0 2.0 1.7 5468 chrX 20957008 intergenic not near genes chrX 20959742 intergenic not near genes chrX 20962476 intergenic Ser6 - chrX_5_20955001 chrX_20955001 RAL-443 3223 chrX 20974179 20974201 chrX 20974383 20974394 4 200 3.5 3.0 3.2 1.0 215 chrX 20974179 intergenic not near genes chrX 20974286 intergenic not near genes chrX 20974394 intergenic not near genes chrX_4_20970001 chrX_20970001 RAL-443 3224 chrX 21008660 21008664 chrX 21008767 21008771 5 107 8.0 8.0 8.0 0.6 111 chrX 21008660 intergenic not near genes chrX 21008716 intergenic not near genes chrX 21008771 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-443 3225 chrX 21008665 21008675 chrX 21008757 21008782 5 104 5.5 7.5 6.5 0.7 117 chrX 21008665 intergenic not near genes chrX 21008724 intergenic not near genes chrX 21008782 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-443 3226 chrX 21009817 21009842 chrX 21009939 21009970 9 127 4.0 6.0 5.0 1.5 153 chrX 21009817 intergenic not near genes chrX 21009894 intergenic not near genes chrX 21009970 intergenic not near genes chrX_9_21005001 chrX_21005001 RAL-443 3227 chrX 21022214 21022240 chrX 21022403 21022425 10 186 3.5 6.0 4.8 1.7 211 chrX 21022214 intergenic not near genes chrX 21022320 intergenic not near genes chrX 21022425 intergenic not near genes chrX_10_21020001 chrX_21020001 RAL-443 3228 chrX 21028680 21028732 chrX 21028886 21028938 16 205 5.0 3.0 4.0 3.2 258 chrX 21028680 3` UTR CG1529 - chrX 21028809 3` UTR CG1529 - chrX 21028938 3` UTR CG1529 - chrX_16_21025001 chrX_21025001 RAL-443 3229 chrX 21042559 21042609 chrX 21045341 21045374 10 2780 36.0 22.0 29.0 0.3 2815 chrX 21042559 exon Mgstl + chrX 21043966 exon,3` UTR Mgstl +,CR44431 - chrX 21045374 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-443 3230 chrX 21061857 21061895 chrX 21062351 21062399 roo 8 501 4.5 8.5 6.5 1.1 542 chrX 21061857 intron bves + chrX 21062128 intron bves + chrX 21062399 intron,3` UTR bves +,CG32512 - chrX_8_21060001 chrX_21060001 RAL-443 3231 chrX 21076309 21076355 chrX 21076408 21076454 11 97 5.5 0.0 2.8 2.9 145 chrX 21076309 intron bves + chrX 21076382 intron bves + chrX 21076454 intron bves + chrX_11_21075001 chrX_21075001 RAL-443 3232 chrX 21078768 21078773 chrX 21078861 21078871 5 95 7.0 1.0 4.0 1.0 103 chrX 21078768 intron bves + chrX 21078820 intron bves + chrX 21078871 intron bves + chrX_5_21075001 chrX_21075001 RAL-443 3233 chrX 21086106 21086121 chrX 21087163 21087178 jockey 5 1057 8.0 4.5 6.2 0.7 1072 chrX 21086106 intergenic not near genes chrX 21086642 intergenic not near genes chrX 21087178 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-443 3234 chrX 21086126 21086158 chrX 21087162 21087210 jockey 16 1050 2.5 4.5 3.5 3.6 1084 chrX 21086126 intergenic not near genes chrX 21086668 intergenic not near genes chrX 21087210 intergenic not near genes chrX_16_21085001 chrX_21085001 RAL-443 3235 chrX 21088023 21088066 chrX 21088175 21088218 8 146 6.0 2.0 4.0 1.6 195 chrX 21088023 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088218 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-443 3236 chrX 21190556 21190811 chrX 21190732 21190902 4 155 1.0 0.0 0.5 2.7 346 chrX 21190556 intergenic not near genes chrX 21190729 intergenic not near genes chrX 21190902 intergenic not near genes chrX_4_21190001 chrX_21190001 RAL-443 3237 chrX 21268048 21268065 chrX 21268149 21268166 4 98 7.0 3.5 5.2 0.6 118 chrX 21268048 intron CG32521 - chrX 21268107 intron CG32521 - chrX 21268166 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-443 3238 chrX 21328103 21328146 chrX 21328234 21328276 19 129 5.5 4.5 5.0 3.2 173 chrX 21328103 3` UTR CG1486 + chrX 21328190 intergenic CG1486 +,tty - chrX 21328276 intergenic CG1486 +,tty - chrX_19_21325001 chrX_21325001 RAL-443 3239 chrX 21388356 21388407 chrX 21388533 21388569 15 175 5.0 0.5 2.8 3.9 213 chrX 21388356 intergenic Hlc - chrX 21388462 intergenic not near genes chrX 21388569 intergenic mst + chrX_15_21385001 chrX_21385001 RAL-443 3240 chrX 21428321 21428366 chrX 21428531 21428576 13 200 3.5 3.0 3.2 3.1 255 chrX 21428321 intron CG42343 - chrX 21428448 intron CG42343 - chrX 21428576 intron CG42343 - chrX_13_21425001 chrX_21425001 RAL-443 3241 chrX 21455201 21455245 chrX 21455399 21455452 10 200 0.5 0.0 0.2 8.3 251 chrX 21455201 intron CG42343 - chrX 21455326 intron CG42343 - chrX 21455452 intron CG42343 - chrX_10_21455001 chrX_21455001 RAL-443 3242 chrX 21458669 21458725 chrX 21464125 21464180 Ivk 27 5453 6.5 3.5 5.0 4.5 5511 chrX 21458669 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464180 intergenic not near genes chrX_27_21460001 chrX_21460001 RAL-443 3243 chrX 21474399 21474433 chrX 21474785 21474819 1731 5 382 2.0 2.0 2.0 1.7 420 chrX 21474399 intergenic not near genes chrX 21474609 intergenic not near genes chrX 21474819 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-443 3244 chrX 21565394 21565439 chrX 21565492 21565537 16 97 4.0 3.5 3.8 3.3 143 chrX 21565394 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565537 intergenic not near genes chrX_16_21565001 chrX_21565001 RAL-443 3245 chrX 21668247 21668289 chrX 21668342 21668388 16 99 40.0 34.5 37.2 0.4 141 chrX 21668247 intergenic not near genes chrX 21668318 intergenic not near genes chrX 21668388 intergenic not near genes chrX_16_21665001 chrX_21665001 RAL-443 3246 chrX 22478871 22478879 chrX 22479024 22479032 6 153 0.0 6.0 3.0 1.5 161 chrX 22478871 intron CG12576 - chrX 22478952 intron CG12576 - chrX 22479032 intron CG12576 - chrX_6_22475001 chrX_22475001 RAL-443 3247 chrX 22478880 22478896 chrX 22479023 22479049 7 149 0.0 6.0 3.0 1.8 169 chrX 22478880 intron CG12576 - chrX 22478964 intron CG12576 - chrX 22479049 intron CG12576 - chrX_7_22475001 chrX_22475001 RAL-443 3248 chrX 22522617 22522659 chrX 22525457 22525478 NOF 10 2835 5.5 2.0 3.8 2.1 2861 chrX 22522617 intron CG17600 + chrX 22524048 intron CG17600 + chrX 22525478 intron CG17600 + chrX_10_22520001 chrX_22520001 RAL-443 3249 chrX 22574802 22574811 chrX 22575057 22575065 6 255 6.0 5.0 5.5 0.9 263 chrX 22574802 intergenic not near genes chrX 22574934 intergenic not near genes chrX 22575065 intergenic not near genes chrX_6_22570001 chrX_22570001 RAL-443 3250 chrX 22574814 22574832 chrX 22575053 22575077 11 252 2.5 4.5 3.5 2.4 263 chrX 22574814 intergenic not near genes chrX 22574946 intergenic not near genes chrX 22575077 intergenic not near genes chrX_11_22570001 chrX_22570001 RAL-443 3251 chrX 22637520 22637546 chrX 22637617 22637644 4 98 2.5 1.0 1.8 1.4 124 chrX 22637520 intergenic not near genes chrX 22637582 intergenic not near genes chrX 22637644 intergenic not near genes chrX_4_22635001 chrX_22635001 RAL-443 3252 chrX 22660571 22660592 chrX 22660650 22660675 5 79 6.5 1.0 3.8 1.0 104 chrX 22660571 intron CR44997 + chrX 22660623 intron CR44997 + chrX 22660675 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-443 3253 chrX 22665786 22665827 chrX 22665883 22665926 10 94 4.0 3.5 3.8 2.1 140 chrX 22665786 intron CR44997 + chrX 22665856 intron CR44997 + chrX 22665926 intron CR44997 + chrX_10_22665001 chrX_22665001 RAL-443 3254 chrX 22697501 22697517 chrX 22701798 22701834 Juan 6 4308 6.0 9.0 7.5 0.7 4333 chrX 22697501 intron CR44997 + chrX 22699668 intron CR44997 + chrX 22701834 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-443 3255 chrX 22811980 22812004 chrX 22816772 22816781 F-element 9 4790 9.0 7.0 8.0 1.0 4801 chrX 22811980 intergenic CG12446 - chrX 22814380 intergenic not near genes chrX 22816781 intergenic not near genes chrX_9_22810001 chrX_22810001 RAL-443 3256 chrX 22870867 22870899 chrX 22870977 22870985 5 105 2.5 4.0 3.2 1.2 118 chrX 22870867 intron,3` UTR CG42346 +,CR43656 - chrX 22870926 intron,3` UTR CG42346 +,CR43656 - chrX 22870985 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-443 3257 chrX 22922509 22922550 chrX 22922593 22922610 10 90 5.0 2.5 3.8 2.1 101 chrX 22922509 intergenic not near genes chrX 22922560 intergenic not near genes chrX 22922610 intergenic not near genes chrX_10_22920001 chrX_22920001 RAL-443 3258 chrX 22987085 22987116 chrX 22989764 22989794 Burdock 6 2679 6.5 3.5 5.0 1.0 2709 chrX 22987085 intron,intron stnA -,stnB - chrX 22988440 intron,intron stnA -,stnB - chrX 22989794 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-443 3259 chrX 22987118 22987134 chrX 22989762 22989798 Burdock 4 2656 4.5 3.0 3.8 0.8 2680 chrX 22987118 intron,intron stnA -,stnB - chrX 22988458 intron,intron stnA -,stnB - chrX 22989798 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-443 3260 chrX 22996299 22996337 chrX 23003553 23003591 roo 13 7252 5.5 10.0 7.8 1.5 7292 chrX 22996299 intron,intron stnA -,stnB - chrX 22999945 intron,intron stnA -,stnB - chrX 23003591 intron,intron stnA -,stnB - chrX_13_22995001 chrX_22995001 RAL-443 3261 chrY 864707 864739 chrY 864804 864835 4 94 25.5 21.5 23.5 0.2 128 chrY 864707 intergenic not near genes chrY 864771 intergenic not near genes chrY 864835 intergenic not near genes chrY_4_860001 chrY_860001 RAL-443 3262 chrY 1419883 1419914 chrY 1420157 1420162 13 269 27.0 24.5 25.8 0.5 279 chrY 1419883 intergenic not near genes chrY 1420022 intergenic not near genes chrY 1420162 intergenic not near genes chrY_13_1420001 chrY_1420001 RAL-443 3263 chrY 3664972 3665020 chrY 3665096 3665140 4 120 0.0 2.0 1.0 2.0 168 chrY 3664972 intergenic CG40948 + chrY 3665056 intergenic not near genes chrY 3665140 intergenic not near genes chrY_4_3665001 chrY_3665001 RAL-443