SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 12965 12990 chr2L 13300 13314 4 327 20.5 14.5 17.5 0.2 349 chr2L 12965 intron l(2)gl - chr2L 13140 intron l(2)gl - chr2L 13314 intron l(2)gl - chr2L_4_10001 chr2L_10001 RAL-441 2 chr2L 46330 46380 chr2L 46428 46473 9 97 1.5 1.0 1.2 4.1 143 chr2L 46330 intron Cda5 - chr2L 46402 intron Cda5 - chr2L 46473 intron Cda5 - chr2L_9_45001 chr2L_45001 RAL-441 3 chr2L 47448 47453 chr2L 52572 52578 jockey 5 5123 13.0 7.0 10.0 0.5 5130 chr2L 47448 intron Cda5 - chr2L 50013 intron Cda5 - chr2L 52578 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-441 4 chr2L 47457 47483 chr2L 52570 52608 jockey 7 5123 8.5 6.0 7.2 0.9 5151 chr2L 47457 intron Cda5 - chr2L 50032 intron Cda5 - chr2L 52608 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-441 5 chr2L 172011 172050 chr2L 172140 172179 11 130 4.5 4.0 4.2 2.1 168 chr2L 172011 intron spen + chr2L 172095 intron spen + chr2L 172179 intron spen + chr2L_11_170001 chr2L_170001 RAL-441 6 chr2L 259367 259383 chr2L 259467 259473 6 99 9.0 4.5 6.8 0.8 106 chr2L 259367 intron CG3645 - chr2L 259420 intron CG3645 - chr2L 259473 intron CG3645 - chr2L_6_255001 chr2L_255001 RAL-441 7 chr2L 297678 297715 chr2L 297794 297796 5 111 9.5 2.0 5.8 0.7 118 chr2L 297678 intergenic Pi3K21B +,Hop + chr2L 297737 intergenic Pi3K21B +,Hop + chr2L 297796 intergenic Pi3K21B +,Hop + chr2L_5_295001 chr2L_295001 RAL-441 8 chr2L 312805 312852 chr2L 312903 312951 23 97 7.5 2.5 5.0 3.8 146 chr2L 312805 intron Plc21C + chr2L 312878 intron Plc21C + chr2L 312951 intron Plc21C + chr2L_23_310001 chr2L_310001 RAL-441 9 chr2L 323437 323480 chr2L 323535 323545 9 92 3.5 3.0 3.2 2.1 108 chr2L 323437 intron Plc21C + chr2L 323491 intron Plc21C + chr2L 323545 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-441 10 chr2L 347865 347917 chr2L 355385 355436 blood 17 7518 4.0 3.5 3.8 3.5 7571 chr2L 347865 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355436 3` UTR Plc21C + chr2L_17_350001 chr2L_350001 RAL-441 11 chr2L 407929 407972 chr2L 408030 408073 9 98 3.0 1.0 2.0 3.0 144 chr2L 407929 3` UTR RpI135 + chr2L 408001 intergenic AP-2alpha -,RpI135 + chr2L 408073 3` UTR AP-2alpha - chr2L_9_405001 chr2L_405001 RAL-441 12 chr2L 458877 458923 chr2L 458974 459020 6 96 3.0 3.5 3.2 1.4 143 chr2L 458877 3` UTR CG4297 - chr2L 458948 3` UTR CG4297 - chr2L 459020 3` UTR CG4297 - chr2L_6_455001 chr2L_455001 RAL-441 13 chr2L 525237 525288 chr2L 525336 525367 16 99 2.0 3.5 2.8 4.2 130 chr2L 525237 intron ush + chr2L 525302 intron ush + chr2L 525367 intron ush + chr2L_16_525001 chr2L_525001 RAL-441 14 chr2L 544807 544858 chr2L 544910 544961 11 102 3.0 1.0 2.0 3.7 154 chr2L 544807 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544884 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544961 3` UTR Ets21C - chr2L_11_540001 chr2L_540001 RAL-441 15 chr2L 628482 628523 chr2L 628625 628667 8 140 3.0 3.5 3.2 1.9 185 chr2L 628482 intergenic CR45369 +,CG2839 + chr2L 628574 intergenic CR45369 +,CG2839 + chr2L 628667 intergenic CR45369 +,CG2839 + chr2L_8_625001 chr2L_625001 RAL-441 16 chr2L 686912 686951 chr2L 695957 695975 roo 8 9047 1.5 4.0 2.8 2.1 9063 chr2L 686912 intron ds - chr2L 691444 intron ds - chr2L 695975 intron ds - chr2L_8_690001 chr2L_690001 RAL-441 17 chr2L 764548 764574 chr2L 764653 764694 6 112 2.5 1.5 2.0 2.0 146 chr2L 764548 intergenic not near genes chr2L 764621 intergenic not near genes chr2L 764694 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-441 18 chr2L 770450 770487 chr2L 772247 772268 Bari1 9 1792 2.5 2.5 2.5 2.6 1818 chr2L 770450 intergenic not near genes chr2L 771359 intergenic not near genes chr2L 772268 intergenic CR44614 + chr2L_9_770001 chr2L_770001 RAL-441 19 chr2L 849462 849481 chr2L 849573 849592 4 110 6.5 6.0 6.2 0.6 130 chr2L 849462 intron drongo - chr2L 849527 intron drongo - chr2L 849592 intron drongo - chr2L_4_845001 chr2L_845001 RAL-441 20 chr2L 877828 877841 chr2L 877927 877942 6 100 8.5 4.5 6.5 0.8 114 chr2L 877828 3` UTR,exon CG15824 -,ninaA + chr2L 877885 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-441 21 chr2L 877842 877877 chr2L 877924 877943 6 91 4.0 4.5 4.2 1.2 101 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-441 22 chr2L 976863 976905 chr2L 984519 984544 roo 6 7647 3.5 0.5 2.0 2.0 7681 chr2L 976863 intergenic not near genes chr2L 980704 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-441 23 chr2L 996702 996720 chr2L 1005817 1005835 roo 5 9115 2.5 2.0 2.2 1.6 9133 chr2L 996702 intergenic not near genes chr2L 1001268 intergenic not near genes chr2L 1005835 intergenic not near genes chr2L_5_1000001 chr2L_1000001 RAL-441 24 chr2L 1035540 1035592 chr2L 1035636 1035686 13 93 3.0 4.5 3.8 2.7 146 chr2L 1035540 intron IA-2 - chr2L 1035613 intron IA-2 - chr2L 1035686 intron IA-2 - chr2L_13_1035001 chr2L_1035001 RAL-441 25 chr2L 1066073 1066128 chr2L 1066174 1066214 19 97 9.0 7.0 8.0 2.1 141 chr2L 1066073 intron S - chr2L 1066144 intron S - chr2L 1066214 intron S - chr2L_19_1065001 chr2L_1065001 RAL-441 26 chr2L 1156840 1156891 chr2L 1156965 1157015 9 119 3.0 5.0 4.0 1.8 175 chr2L 1156840 intron capt - chr2L 1156928 intron capt - chr2L 1157015 intron capt - chr2L_9_1155001 chr2L_1155001 RAL-441 27 chr2L 1220111 1220145 chr2L 1227597 1227631 blood 10 7485 7.0 3.5 5.2 1.6 7520 chr2L 1220111 intron CG42329 + chr2L 1223871 intron CG42329 + chr2L 1227631 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-441 28 chr2L 1301746 1301782 chr2L 1302304 1302333 gypsy 11 557 4.0 3.0 3.5 2.4 587 chr2L 1301746 intergenic not near genes chr2L 1302040 intergenic not near genes chr2L 1302333 intergenic not near genes chr2L_11_1300001 chr2L_1300001 RAL-441 29 chr2L 1343507 1343558 chr2L 1343720 1343757 10 209 0.0 3.5 1.8 3.6 250 chr2L 1343507 exon CG33922 - chr2L 1343632 intron CG33922 - chr2L 1343757 exon CG33922 - chr2L_10_1340001 chr2L_1340001 RAL-441 30 chr2L 1348830 1348877 chr2L 1348935 1348946 7 95 4.5 6.0 5.2 1.1 116 chr2L 1348830 intergenic not near genes chr2L 1348888 intergenic not near genes chr2L 1348946 intergenic not near genes chr2L_7_1345001 chr2L_1345001 RAL-441 31 chr2L 1427799 1427847 chr2L 1427901 1427949 11 94 5.0 2.5 3.8 2.3 150 chr2L 1427799 intergenic not near genes chr2L 1427874 intergenic not near genes chr2L 1427949 intergenic not near genes chr2L_11_1425001 chr2L_1425001 RAL-441 32 chr2L 1547296 1547338 chr2L 1547568 1547577 5 262 2.0 0.5 1.2 2.3 281 chr2L 1547296 intergenic not near genes chr2L 1547436 intergenic not near genes chr2L 1547577 intergenic not near genes chr2L_5_1545001 chr2L_1545001 RAL-441 33 chr2L 1590954 1590989 chr2L 1591043 1591085 22 90 2.5 1.5 2.0 7.3 131 chr2L 1590954 intron haf + chr2L 1591020 intron haf + chr2L 1591085 intron haf + chr2L_22_1590001 chr2L_1590001 RAL-441 34 chr2L 1615379 1615414 chr2L 1615481 1615508 10 98 0.0 5.5 2.8 2.6 129 chr2L 1615379 intergenic not near genes chr2L 1615444 intergenic not near genes chr2L 1615508 intergenic not near genes chr2L_10_1615001 chr2L_1615001 RAL-441 35 chr2L 1678944 1679002 chr2L 1686445 1686474 blood 4 7490 0.0 3.5 1.8 1.4 7530 chr2L 1678944 intron chinmo + chr2L 1682709 intron chinmo + chr2L 1686474 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-441 36 chr2L 1785663 1785707 chr2L 1785763 1785798 11 104 3.0 3.0 3.0 2.8 135 chr2L 1785663 intergenic Gr22e + chr2L 1785730 intergenic Gr22e + chr2L 1785798 intergenic not near genes chr2L_11_1785001 chr2L_1785001 RAL-441 37 chr2L 1883401 1883439 chr2L 1884004 1884018 7 599 4.0 2.0 3.0 1.8 617 chr2L 1883401 intron CG15358 - chr2L 1883710 intron CG15358 - chr2L 1884018 exon CG15358 - chr2L_7_1880001 chr2L_1880001 RAL-441 38 chr2L 1925469 1925501 chr2L 1925566 1925598 14 96 5.0 4.0 4.5 2.5 129 chr2L 1925469 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925598 intron CG7337 + chr2L_14_1925001 chr2L_1925001 RAL-441 39 chr2L 2049200 2049234 chr2L 2049299 2049316 4 96 1.0 5.0 3.0 1.0 116 chr2L 2049200 intergenic not near genes chr2L 2049258 intergenic not near genes chr2L 2049316 intergenic not near genes chr2L_4_2045001 chr2L_2045001 RAL-441 40 chr2L 2100397 2100407 chr2L 2109524 2109548 roo 4 9139 7.0 3.5 5.2 0.6 9151 chr2L 2100397 intron dpr3 - chr2L 2104972 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-441 41 chr2L 2112131 2112143 chr2L 2119774 2119825 opus 5 7655 2.0 2.0 2.0 1.7 7694 chr2L 2112131 intergenic not near genes chr2L 2115978 intergenic not near genes chr2L 2119825 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-441 42 chr2L 2179542 2179585 chr2L 2179787 2179811 10 245 3.0 7.5 5.2 1.6 269 chr2L 2179542 intergenic not near genes chr2L 2179676 intergenic not near genes chr2L 2179811 intergenic not near genes chr2L_10_2175001 chr2L_2175001 RAL-441 43 chr2L 2256459 2256474 chr2L 2256552 2256574 10 98 3.0 7.0 5.0 1.7 115 chr2L 2256459 intergenic not near genes chr2L 2256516 intergenic not near genes chr2L 2256574 intergenic not near genes chr2L_10_2255001 chr2L_2255001 RAL-441 44 chr2L 2294050 2294070 chr2L 2299250 2299274 copia 5 5209 2.0 5.0 3.5 1.1 5224 chr2L 2294050 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299274 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-441 45 chr2L 2299314 2299365 chr2L 2299412 2299460 19 97 1.5 5.0 3.2 4.5 146 chr2L 2299314 intergenic not near genes chr2L 2299387 intergenic not near genes chr2L 2299460 intergenic not near genes chr2L_19_2295001 chr2L_2295001 RAL-441 46 chr2L 2348098 2348132 chr2L 2348196 2348201 5 87 3.5 4.5 4.0 1.0 103 chr2L 2348098 intron,intron CG9967 -,eys + chr2L 2348150 intron,intron CG9967 -,eys + chr2L 2348201 intron,intron CG9967 -,eys + chr2L_5_2345001 chr2L_2345001 RAL-441 47 chr2L 2427357 2427401 chr2L 2427463 2427507 14 103 5.0 2.0 3.5 3.1 150 chr2L 2427357 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427507 3` UTR CR44912 - chr2L_14_2425001 chr2L_2425001 RAL-441 48 chr2L 2475658 2475694 chr2L 2475763 2475799 7 103 2.0 3.5 2.8 1.8 141 chr2L 2475658 intergenic not near genes chr2L 2475728 intergenic not near genes chr2L 2475799 intergenic not near genes chr2L_7_2475001 chr2L_2475001 RAL-441 49 chr2L 2503697 2503742 chr2L 2504496 2504538 5 798 5.0 4.5 4.8 0.9 841 chr2L 2503697 intergenic not near genes chr2L 2504118 intergenic not near genes chr2L 2504538 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-441 50 chr2L 2565538 2565561 chr2L 2571631 2571653 297 7 6093 4.0 5.5 4.8 1.2 6115 chr2L 2565538 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571653 exon Cyp309a2 - chr2L_7_2565001 chr2L_2565001 RAL-441 51 chr2L 2587814 2587838 chr2L 2587897 2587924 9 90 1.5 4.5 3.0 2.2 110 chr2L 2587814 intergenic not near genes chr2L 2587869 intergenic not near genes chr2L 2587924 intergenic not near genes chr2L_9_2585001 chr2L_2585001 RAL-441 52 chr2L 2587842 2587847 chr2L 2587893 2587945 5 79 1.0 3.5 2.2 1.6 103 chr2L 2587842 intergenic not near genes chr2L 2587894 intergenic not near genes chr2L 2587945 intergenic not near genes chr2L_5_2585001 chr2L_2585001 RAL-441 53 chr2L 2618018 2618070 chr2L 2618115 2618168 6 98 1.5 1.0 1.2 2.7 150 chr2L 2618018 intergenic not near genes chr2L 2618093 intergenic not near genes chr2L 2618168 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-441 54 chr2L 2638839 2638862 chr2L 2638927 2638951 4 92 4.5 1.5 3.0 1.0 112 chr2L 2638839 intergenic not near genes chr2L 2638895 intergenic not near genes chr2L 2638951 intergenic not near genes chr2L_4_2635001 chr2L_2635001 RAL-441 55 chr2L 2661223 2661231 chr2L 2663039 2663065 I-element 5 1824 1.0 2.5 1.8 1.8 1842 chr2L 2661223 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663065 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-441 56 chr2L 2667610 2667624 chr2L 2667709 2667719 4 98 10.0 6.5 8.2 0.4 109 chr2L 2667610 intergenic not near genes chr2L 2667664 intergenic not near genes chr2L 2667719 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-441 57 chr2L 2667631 2667655 chr2L 2667703 2667747 8 87 7.5 4.0 5.8 1.2 116 chr2L 2667631 intergenic not near genes chr2L 2667689 intergenic not near genes chr2L 2667747 intergenic not near genes chr2L_8_2665001 chr2L_2665001 RAL-441 58 chr2L 2715678 2715699 chr2L 2715774 2715795 6 96 1.0 2.0 1.5 2.4 117 chr2L 2715678 intron CG31690 + chr2L 2715736 intron CG31690 + chr2L 2715795 intron CG31690 + chr2L_6_2715001 chr2L_2715001 RAL-441 59 chr2L 2772601 2772628 chr2L 2779194 2779220 297 5 6592 4.0 4.0 4.0 1.0 6619 chr2L 2772601 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779220 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-441 60 chr2L 2804217 2804268 chr2L 2804326 2804377 13 107 5.0 4.0 4.5 2.4 160 chr2L 2804217 intergenic not near genes chr2L 2804297 intergenic not near genes chr2L 2804377 intergenic not near genes chr2L_13_2800001 chr2L_2800001 RAL-441 61 chr2L 2826530 2826575 chr2L 2826634 2826680 9 103 0.0 6.5 3.2 2.1 150 chr2L 2826530 intron Duox - chr2L 2826605 intron Duox - chr2L 2826680 intron Duox - chr2L_9_2825001 chr2L_2825001 RAL-441 62 chr2L 2857803 2857832 chr2L 2857898 2857925 4 95 3.0 1.0 2.0 1.3 122 chr2L 2857803 intron CG2991 + chr2L 2857864 intron CG2991 + chr2L 2857925 intron CG2991 + chr2L_4_2855001 chr2L_2855001 RAL-441 63 chr2L 2895668 2895714 chr2L 2895772 2895778 8 100 4.0 2.0 3.0 2.0 110 chr2L 2895668 intron lilli + chr2L 2895723 intron lilli + chr2L 2895778 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-441 64 chr2L 2933298 2933316 chr2L 2935486 2935508 pogo 5 2187 7.0 6.0 6.5 0.7 2210 chr2L 2933298 intron lilli + chr2L 2934403 intron lilli + chr2L 2935508 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-441 65 chr2L 2937399 2937432 chr2L 2937495 2937529 10 96 6.0 2.0 4.0 2.0 130 chr2L 2937399 intron lilli + chr2L 2937464 intron lilli + chr2L 2937529 intron lilli + chr2L_10_2935001 chr2L_2935001 RAL-441 66 chr2L 3008889 3008939 chr2L 3009018 3009068 14 127 2.5 2.5 2.5 4.0 179 chr2L 3008889 intron CG17265 + chr2L 3008978 intron CG17265 + chr2L 3009068 intron CG17265 + chr2L_14_3005001 chr2L_3005001 RAL-441 67 chr2L 3072517 3072557 chr2L 3073030 3073030 13 509 6.0 0.5 3.2 3.1 513 chr2L 3072517 intron toc - chr2L 3072774 intron toc - chr2L 3073030 intron toc - chr2L_13_3070001 chr2L_3070001 RAL-441 68 chr2L 3073023 3073058 chr2L 3078241 3078281 copia 12 5222 0.0 5.5 2.8 3.2 5258 chr2L 3073023 intron toc - chr2L 3075652 intron toc - chr2L 3078281 intron toc - chr2L_12_3075001 chr2L_3075001 RAL-441 69 chr2L 3108871 3108893 chr2L 3108952 3108990 10 92 2.0 5.0 3.5 2.2 119 chr2L 3108871 intron toc - chr2L 3108930 intron toc - chr2L 3108990 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-441 70 chr2L 3202717 3202770 chr2L 3210165 3210213 mdg1 13 7447 3.0 0.0 1.5 5.2 7496 chr2L 3202717 intergenic not near genes chr2L 3206465 intergenic not near genes chr2L 3210213 intergenic CR45336 + chr2L_13_3205001 chr2L_3205001 RAL-441 71 chr2L 3232034 3232072 chr2L 3232129 3232175 5 102 4.0 0.0 2.0 1.7 141 chr2L 3232034 intergenic not near genes chr2L 3232104 intergenic not near genes chr2L 3232175 intergenic not near genes chr2L_5_3230001 chr2L_3230001 RAL-441 72 chr2L 3251477 3251523 chr2L 3259062 3259108 springer 11 7585 4.0 2.5 3.2 2.6 7631 chr2L 3251477 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259108 intergenic not near genes chr2L_11_3255001 chr2L_3255001 RAL-441 73 chr2L 3291217 3291266 chr2L 3291317 3291365 7 98 3.5 5.0 4.2 1.3 148 chr2L 3291217 intergenic CG9664 - chr2L 3291291 3` UTR CG9664 - chr2L 3291365 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-441 74 chr2L 3388583 3388620 chr2L 3388843 3388881 pogo 8 260 4.5 2.0 3.2 1.9 298 chr2L 3388583 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388881 intergenic CG42460 -,CR44791 + chr2L_8_3385001 chr2L_3385001 RAL-441 75 chr2L 3508327 3508376 chr2L 3508425 3508474 11 98 3.5 3.0 3.2 2.6 147 chr2L 3508327 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508474 intergenic CR45299 +,tim - chr2L_11_3505001 chr2L_3505001 RAL-441 76 chr2L 3523025 3523043 chr2L 3523145 3523164 4 120 4.0 2.0 3.0 1.0 139 chr2L 3523025 exon Sr-CIV - chr2L 3523094 intron Sr-CIV - chr2L 3523164 exon Sr-CIV - chr2L_4_3520001 chr2L_3520001 RAL-441 77 chr2L 3634086 3634133 chr2L 3634188 3634235 11 100 2.5 5.5 4.0 2.2 149 chr2L 3634086 intron for - chr2L 3634160 intron for - chr2L 3634235 intron for - chr2L_11_3630001 chr2L_3630001 RAL-441 78 chr2L 3649772 3649806 chr2L 3654994 3655028 copia 7 5216 0.5 2.0 1.2 3.2 5256 chr2L 3649772 intron for - chr2L 3652400 intron for - chr2L 3655028 intron for - chr2L_7_3650001 chr2L_3650001 RAL-441 79 chr2L 3663289 3663331 chr2L 3663388 3663428 13 97 5.5 5.0 5.2 2.1 139 chr2L 3663289 5` UTR CG34340 + chr2L 3663358 intron CG34340 + chr2L 3663428 intron CG34340 + chr2L_13_3660001 chr2L_3660001 RAL-441 80 chr2L 3668054 3668063 chr2L 3668147 3668156 9 94 0.0 6.0 3.0 2.2 102 chr2L 3668054 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668105 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668156 intron,exon CG34340 +,Sfp24Ba - chr2L_9_3665001 chr2L_3665001 RAL-441 81 chr2L 3784784 3784808 chr2L 3785663 3785687 7 878 16.5 15.5 16.0 0.4 903 chr2L 3784784 intergenic CG31960 + chr2L 3785236 exon CG31960 + chr2L 3785687 intergenic CG31958 +,CG31960 + chr2L_7_3785001 chr2L_3785001 RAL-441 82 chr2L 3891883 3891924 chr2L 3891976 3892013 13 98 4.0 4.0 4.0 2.6 130 chr2L 3891883 intron capu - chr2L 3891948 intron capu - chr2L 3892013 intron capu - chr2L_13_3890001 chr2L_3890001 RAL-441 83 chr2L 3898259 3898307 chr2L 3898353 3898405 5 91 0.0 5.0 2.5 1.4 146 chr2L 3898259 intron capu - chr2L 3898332 intron capu - chr2L 3898405 intron capu - chr2L_5_3895001 chr2L_3895001 RAL-441 84 chr2L 3960545 3960594 chr2L 3960733 3960781 15 184 2.5 1.5 2.0 5.0 236 chr2L 3960545 intron fred - chr2L 3960663 intron fred - chr2L 3960781 intron fred - chr2L_15_3960001 chr2L_3960001 RAL-441 85 chr2L 4037797 4037808 chr2L 4037903 4037915 4 107 2.0 3.0 2.5 1.1 118 chr2L 4037797 intron ed + chr2L 4037856 intron ed + chr2L 4037915 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-441 86 chr2L 4060166 4060200 chr2L 4060262 4060296 8 93 3.0 5.0 4.0 1.6 130 chr2L 4060166 intron ed + chr2L 4060231 intron ed + chr2L 4060296 intron ed + chr2L_8_4060001 chr2L_4060001 RAL-441 87 chr2L 4066043 4066057 chr2L 4068860 4068884 Juan 9 2837 3.5 5.5 4.5 1.6 2841 chr2L 4066043 intron ed + chr2L 4067464 intron ed + chr2L 4068884 intron ed + chr2L_9_4065001 chr2L_4065001 RAL-441 88 chr2L 4082805 4082837 chr2L 4082893 4082919 5 93 5.0 5.0 5.0 0.8 114 chr2L 4082805 intron ed + chr2L 4082862 intron ed + chr2L 4082919 intron ed + chr2L_5_4080001 chr2L_4080001 RAL-441 89 chr2L 4155603 4155633 chr2L 4155863 4155893 10 261 0.5 2.5 1.5 4.0 290 chr2L 4155603 intergenic not near genes chr2L 4155748 intergenic not near genes chr2L 4155893 intergenic not near genes chr2L_10_4155001 chr2L_4155001 RAL-441 90 chr2L 4160498 4160534 chr2L 4160922 4160960 12 421 2.5 6.5 4.5 2.2 462 chr2L 4160498 intergenic not near genes chr2L 4160729 intergenic not near genes chr2L 4160960 intergenic not near genes chr2L_12_4160001 chr2L_4160001 RAL-441 91 chr2L 4184458 4184502 chr2L 4184792 4184805 10 332 1.5 2.5 2.0 3.3 347 chr2L 4184458 intergenic not near genes chr2L 4184632 intergenic not near genes chr2L 4184805 intergenic not near genes chr2L_10_4180001 chr2L_4180001 RAL-441 92 chr2L 4265641 4265679 chr2L 4265751 4265789 7 102 3.5 1.0 2.2 2.2 148 chr2L 4265641 intergenic not near genes chr2L 4265715 intergenic not near genes chr2L 4265789 intergenic not near genes chr2L_7_4265001 chr2L_4265001 RAL-441 93 chr2L 4270446 4270472 chr2L 4270542 4270571 10 93 4.5 6.5 5.5 1.5 125 chr2L 4270446 intergenic not near genes chr2L 4270508 intergenic not near genes chr2L 4270571 intergenic not near genes chr2L_10_4270001 chr2L_4270001 RAL-441 94 chr2L 4586276 4586321 chr2L 4586379 4586398 8 96 4.5 2.5 3.5 1.8 122 chr2L 4586276 intron dp - chr2L 4586337 intron dp - chr2L 4586398 intron dp - chr2L_8_4585001 chr2L_4585001 RAL-441 95 chr2L 4601688 4601737 chr2L 4609149 4609198 mdg1 20 7459 2.0 6.0 4.0 4.0 7510 chr2L 4601688 intron dp - chr2L 4605443 intron dp - chr2L 4609198 intron dp - chr2L_20_4605001 chr2L_4605001 RAL-441 96 chr2L 4661834 4661854 chr2L 4669433 4669453 opus 7 7597 4.0 5.5 4.8 1.2 7619 chr2L 4661834 intergenic not near genes chr2L 4665644 intergenic not near genes chr2L 4669453 intergenic not near genes chr2L_7_4665001 chr2L_4665001 RAL-441 97 chr2L 4698786 4698823 chr2L 4699300 4699343 16 517 31.0 18.0 24.5 0.6 557 chr2L 4698786 intron CG34351 + chr2L 4699064 intron CG34351 + chr2L 4699343 intron CG34351 + chr2L_16_4695001 chr2L_4695001 RAL-441 98 chr2L 4819499 4819518 chr2L 4819616 4819656 4 134 2.5 5.5 4.0 0.8 157 chr2L 4819499 intergenic not near genes chr2L 4819578 intergenic not near genes chr2L 4819656 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-441 99 chr2L 4858457 4858483 chr2L 4858564 4858590 11 108 2.5 0.0 1.2 5.0 133 chr2L 4858457 intron pog + chr2L 4858524 intron pog + chr2L 4858590 intron pog + chr2L_11_4855001 chr2L_4855001 RAL-441 100 chr2L 4869453 4869496 chr2L 4869551 4869596 11 98 3.5 3.5 3.5 2.4 143 chr2L 4869453 intron pog + chr2L 4869524 intron pog + chr2L 4869596 intron pog + chr2L_11_4865001 chr2L_4865001 RAL-441 101 chr2L 4923236 4923250 chr2L 4923347 4923361 4 110 0.0 5.0 2.5 1.1 125 chr2L 4923236 intron hoe1 - chr2L 4923298 intron hoe1 - chr2L 4923361 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-441 102 chr2L 4925660 4925696 chr2L 4925755 4925795 8 98 1.5 2.0 1.8 2.9 135 chr2L 4925660 intron hoe1 - chr2L 4925728 intron hoe1 - chr2L 4925795 intron hoe1 - chr2L_8_4925001 chr2L_4925001 RAL-441 103 chr2L 4929124 4929149 chr2L 4929228 4929250 9 102 3.0 4.5 3.8 1.9 126 chr2L 4929124 intron hoe1 - chr2L 4929187 intron hoe1 - chr2L 4929250 intron hoe1 - chr2L_9_4925001 chr2L_4925001 RAL-441 104 chr2L 4953494 4953536 chr2L 4953755 4953796 pogo 10 259 4.0 2.0 3.0 2.5 302 chr2L 4953494 intergenic Jon25Bii - chr2L 4953645 intergenic not near genes chr2L 4953796 intergenic Jon25Bi - chr2L_10_4950001 chr2L_4950001 RAL-441 105 chr2L 5025153 5025162 chr2L 5025249 5025258 5 96 4.0 3.5 3.8 1.0 105 chr2L 5025153 intron vkg - chr2L 5025206 intron vkg - chr2L 5025258 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-441 106 chr2L 5040670 5040708 chr2L 5040785 5040824 8 114 4.5 3.5 4.0 1.6 154 chr2L 5040670 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040747 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040824 3` UTR CG31650 - chr2L_8_5040001 chr2L_5040001 RAL-441 107 chr2L 5083748 5083774 chr2L 5083824 5083855 11 88 0.5 1.5 1.0 5.5 107 chr2L 5083748 intron pgant5 - chr2L 5083802 intron pgant5 - chr2L 5083855 intron pgant5 - chr2L_11_5080001 chr2L_5080001 RAL-441 108 chr2L 5120982 5121003 chr2L 5121084 5121117 8 108 3.0 6.0 4.5 1.5 135 chr2L 5120982 intron Msp300 + chr2L 5121050 intron Msp300 + chr2L 5121117 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-441 109 chr2L 5342761 5342802 chr2L 5345153 5345194 Doc 8 2392 1.5 0.5 1.0 4.0 2433 chr2L 5342761 intergenic not near genes chr2L 5343978 intergenic not near genes chr2L 5345194 intergenic not near genes chr2L_8_5340001 chr2L_5340001 RAL-441 110 chr2L 5438551 5438585 chr2L 5438685 5438712 6 134 5.0 0.0 2.5 1.7 161 chr2L 5438551 intron CR31647 - chr2L 5438632 intron CR31647 - chr2L 5438712 intron CR31647 - chr2L_6_5435001 chr2L_5435001 RAL-441 111 chr2L 5475130 5475162 chr2L 5475255 5475287 5 125 4.0 3.0 3.5 1.1 157 chr2L 5475130 intergenic not near genes chr2L 5475208 intergenic not near genes chr2L 5475287 intergenic not near genes chr2L_5_5475001 chr2L_5475001 RAL-441 112 chr2L 5516650 5516687 chr2L 5516749 5516784 10 96 1.5 9.0 5.2 1.6 134 chr2L 5516650 intergenic not near genes chr2L 5516717 intergenic not near genes chr2L 5516784 intergenic not near genes chr2L_10_5515001 chr2L_5515001 RAL-441 113 chr2L 5563673 5563713 chr2L 5563769 5563814 5 102 0.5 3.5 2.0 1.7 141 chr2L 5563673 intergenic GluRIIB + chr2L 5563744 intergenic GluRIIB + chr2L 5563814 intergenic GluRIIB + chr2L_5_5560001 chr2L_5560001 RAL-441 114 chr2L 5594344 5594354 chr2L 5594414 5594461 4 98 3.5 0.0 1.8 1.4 117 chr2L 5594344 intergenic not near genes chr2L 5594402 intergenic not near genes chr2L 5594461 intergenic not near genes chr2L_4_5590001 chr2L_5590001 RAL-441 115 chr2L 5676958 5677012 chr2L 5677061 5677099 11 100 2.5 3.5 3.0 2.8 141 chr2L 5676958 intergenic not near genes chr2L 5677028 intergenic not near genes chr2L 5677099 intergenic not near genes chr2L_11_5675001 chr2L_5675001 RAL-441 116 chr2L 5695843 5695874 chr2L 5695954 5695986 10 111 6.0 2.5 4.2 1.9 143 chr2L 5695843 intergenic not near genes chr2L 5695914 intergenic not near genes chr2L 5695986 intergenic not near genes chr2L_10_5695001 chr2L_5695001 RAL-441 117 chr2L 5720245 5720294 chr2L 5720352 5720385 14 100 4.0 7.0 5.5 2.2 140 chr2L 5720245 intron CG11149 - chr2L 5720315 intron CG11149 - chr2L 5720385 intron CG11149 - chr2L_14_5720001 chr2L_5720001 RAL-441 118 chr2L 5827698 5827741 chr2L 5836726 5836769 roo 12 9023 3.0 7.0 5.0 2.0 9071 chr2L 5827698 intron TrissinR + chr2L 5832234 intron TrissinR + chr2L 5836769 intron TrissinR + chr2L_12_5830001 chr2L_5830001 RAL-441 119 chr2L 5904441 5904468 chr2L 5904541 5904541 7 95 2.5 1.0 1.8 2.5 100 chr2L 5904441 exon CG9021 - chr2L 5904491 intron CG9021 - chr2L 5904541 intron CG9021 - chr2L_7_5900001 chr2L_5900001 RAL-441 120 chr2L 5944560 5944585 chr2L 5948982 5949007 7 4422 21.5 24.0 22.8 0.3 4447 chr2L 5944560 intron Gpdh + chr2L 5946784 intron Gpdh + chr2L 5949007 intergenic Gpdh +,CG9044 + chr2L_7_5945001 chr2L_5945001 RAL-441 121 chr2L 5962283 5962301 chr2L 5962359 5962396 8 88 2.0 1.5 1.8 2.9 113 chr2L 5962283 intergenic not near genes chr2L 5962340 intergenic not near genes chr2L 5962396 intergenic not near genes chr2L_8_5960001 chr2L_5960001 RAL-441 122 chr2L 6002421 6002463 chr2L 6002526 6002569 5 102 3.5 3.5 3.5 1.1 148 chr2L 6002421 3` UTR Tsp26A + chr2L 6002495 3` UTR Tsp26A + chr2L 6002569 3` UTR Tsp26A + chr2L_5_6000001 chr2L_6000001 RAL-441 123 chr2L 6037736 6037778 chr2L 6037840 6037848 13 91 3.0 6.5 4.8 2.2 112 chr2L 6037736 exon CG9117 - chr2L 6037792 exon CG9117 - chr2L 6037848 5` UTR CG9117 - chr2L_13_6035001 chr2L_6035001 RAL-441 124 chr2L 6050424 6050468 chr2L 6050548 6050591 9 122 3.5 1.0 2.2 2.8 167 chr2L 6050424 3` UTR CG12393 + chr2L 6050508 intergenic CG12393 +,CG9135 + chr2L 6050591 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-441 125 chr2L 6110301 6110344 chr2L 6110396 6110445 10 98 2.5 2.0 2.2 3.1 144 chr2L 6110301 intron stai + chr2L 6110373 intron stai + chr2L 6110445 intron stai + chr2L_10_6110001 chr2L_6110001 RAL-441 126 chr2L 6136532 6136577 chr2L 6136649 6136678 9 112 1.5 5.5 3.5 2.0 146 chr2L 6136532 intergenic not near genes chr2L 6136605 intergenic not near genes chr2L 6136678 intergenic not near genes chr2L_9_6135001 chr2L_6135001 RAL-441 127 chr2L 6157269 6157295 chr2L 6157378 6157404 5 109 1.0 6.5 3.8 1.0 135 chr2L 6157269 intergenic not near genes chr2L 6157336 intergenic not near genes chr2L 6157404 intergenic not near genes chr2L_5_6155001 chr2L_6155001 RAL-441 128 chr2L 6279626 6279648 chr2L 6279725 6279747 INE-1 6 99 4.5 0.0 2.2 1.9 121 chr2L 6279626 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279747 intron Ddr + chr2L_6_6275001 chr2L_6275001 RAL-441 129 chr2L 6318729 6318764 chr2L 6318899 6318936 9 172 4.0 3.0 3.5 2.0 207 chr2L 6318729 intron Ddr + chr2L 6318832 intron Ddr + chr2L 6318936 intron Ddr + chr2L_9_6315001 chr2L_6315001 RAL-441 130 chr2L 6363133 6363183 chr2L 6366073 6366122 Burdock 17 2934 3.5 4.5 4.0 3.4 2989 chr2L 6363133 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366122 intergenic not near genes chr2L_17_6360001 chr2L_6360001 RAL-441 131 chr2L 6387885 6387923 chr2L 6387995 6388033 8 106 4.5 5.0 4.8 1.4 148 chr2L 6387885 intron CG42368 - chr2L 6387959 intron CG42368 - chr2L 6388033 intron CG42368 - chr2L_8_6385001 chr2L_6385001 RAL-441 132 chr2L 6426841 6426862 chr2L 6445121 6445142 roo 4 18279 6.0 4.5 5.2 0.6 18301 chr2L 6426841 3` UTR CG9527 - chr2L 6435992 intron CG9527 - chr2L 6445142 exon CG9527 - chr2L_4_6435001 chr2L_6435001 RAL-441 133 chr2L 6426865 6426888 chr2L 6445120 6445150 roo 12 18276 3.5 3.5 3.5 2.7 18285 chr2L 6426865 3` UTR CG9527 - chr2L 6436008 intron CG9527 - chr2L 6445150 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-441 134 chr2L 6470653 6470700 chr2L 6470764 6470807 21 109 6.0 5.5 5.8 3.1 154 chr2L 6470653 intron mmy - chr2L 6470730 intron mmy - chr2L 6470807 intron mmy - chr2L_21_6470001 chr2L_6470001 RAL-441 135 chr2L 6544354 6544394 chr2L 6544464 6544506 12 110 5.5 3.0 4.2 2.3 152 chr2L 6544354 intron eya - chr2L 6544430 intron eya - chr2L 6544506 intron eya - chr2L_12_6540001 chr2L_6540001 RAL-441 136 chr2L 6597250 6597269 chr2L 6597385 6597403 5 135 6.0 1.5 3.8 1.0 153 chr2L 6597250 intron CG11319 - chr2L 6597326 intron CG11319 - chr2L 6597403 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-441 137 chr2L 6626870 6626918 chr2L 6626974 6626988 12 100 4.5 5.0 4.8 2.1 118 chr2L 6626870 intron Oatp26F - chr2L 6626929 intron Oatp26F - chr2L 6626988 intron Oatp26F - chr2L_12_6625001 chr2L_6625001 RAL-441 138 chr2L 6640901 6640941 chr2L 6641005 6641032 10 101 1.5 4.5 3.0 2.5 131 chr2L 6640901 exon CG31635 - chr2L 6640966 intron CG31635 - chr2L 6641032 intron CG31635 - chr2L_10_6640001 chr2L_6640001 RAL-441 139 chr2L 6677631 6677683 chr2L 6677734 6677786 10 98 3.0 3.0 3.0 2.5 155 chr2L 6677631 intergenic CG11329 -,Nhe3 - chr2L 6677708 intergenic CG11329 -,Nhe3 - chr2L 6677786 intergenic Nhe3 -,CG11329 - chr2L_10_6675001 chr2L_6675001 RAL-441 140 chr2L 6724509 6724556 chr2L 6724612 6724631 11 97 4.0 3.0 3.5 2.4 122 chr2L 6724509 intron Liprin-alpha + chr2L 6724570 intron Liprin-alpha + chr2L 6724631 intron Liprin-alpha + chr2L_11_6720001 chr2L_6720001 RAL-441 141 chr2L 6799523 6799571 chr2L 6799631 6799654 10 105 1.0 2.5 1.8 3.6 131 chr2L 6799523 5` UTR CR43610 + chr2L 6799588 5` UTR CR43610 + chr2L 6799654 intergenic CR43610 +,CG17376 - chr2L_10_6795001 chr2L_6795001 RAL-441 142 chr2L 6876781 6876804 chr2L 6882974 6882975 diver 7 6199 10.0 6.5 8.2 0.8 6194 chr2L 6876781 intron Nlg2 + chr2L 6879878 intron Nlg2 + chr2L 6882975 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-441 143 chr2L 6887479 6887527 chr2L 6887649 6887699 5 171 4.0 0.0 2.0 1.7 220 chr2L 6887479 intron Nlg2 + chr2L 6887589 intron Nlg2 + chr2L 6887699 intron Nlg2 + chr2L_5_6885001 chr2L_6885001 RAL-441 144 chr2L 6972225 6972263 chr2L 6972657 6972694 4 434 0.0 2.0 1.0 2.0 469 chr2L 6972225 intergenic snRNP-U1-70K - chr2L 6972460 intergenic uif - chr2L 6972694 intergenic uif - chr2L_4_6970001 chr2L_6970001 RAL-441 145 chr2L 7019566 7019582 chr2L 7019662 7019678 7 95 5.0 7.0 6.0 1.0 112 chr2L 7019566 intron ade3 - chr2L 7019622 intron ade3 - chr2L 7019678 intron ade3 - chr2L_7_7015001 chr2L_7015001 RAL-441 146 chr2L 7042042 7042085 chr2L 7042151 7042194 9 104 2.0 1.0 1.5 3.6 152 chr2L 7042042 intron milt + chr2L 7042118 intron milt + chr2L 7042194 intron milt + chr2L_9_7040001 chr2L_7040001 RAL-441 147 chr2L 7132218 7132237 chr2L 7132329 7132348 5 111 2.0 0.0 1.0 2.5 130 chr2L 7132218 intron Pvf3 - chr2L 7132283 intron Pvf3 - chr2L 7132348 intron Pvf3 - chr2L_5_7130001 chr2L_7130001 RAL-441 148 chr2L 7151819 7151850 chr2L 7152134 7152165 4 315 4.0 1.0 2.5 1.1 346 chr2L 7151819 intron Pvf3 - chr2L 7151992 intron Pvf3 - chr2L 7152165 intron Pvf3 - chr2L_4_7150001 chr2L_7150001 RAL-441 149 chr2L 7153133 7153163 chr2L 7153271 7153299 9 138 2.5 3.5 3.0 2.2 166 chr2L 7153133 intron Pvf3 - chr2L 7153216 intron Pvf3 - chr2L 7153299 intron Pvf3 - chr2L_9_7150001 chr2L_7150001 RAL-441 150 chr2L 7244705 7244754 chr2L 7244850 7244897 12 143 1.5 1.5 1.5 4.8 192 chr2L 7244705 intron Ndae1 - chr2L 7244801 intron Ndae1 - chr2L 7244897 intron Ndae1 - chr2L_12_7240001 chr2L_7240001 RAL-441 151 chr2L 7254526 7254547 chr2L 7254625 7254645 8 97 0.0 2.0 1.0 4.0 119 chr2L 7254526 intergenic not near genes chr2L 7254586 intergenic not near genes chr2L 7254645 intergenic not near genes chr2L_8_7250001 chr2L_7250001 RAL-441 152 chr2L 7295978 7296021 chr2L 7296133 7296181 6 157 1.5 0.5 1.0 3.0 203 chr2L 7295978 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296181 intergenic not near genes chr2L_6_7295001 chr2L_7295001 RAL-441 153 chr2L 7326472 7326503 chr2L 7326610 7326641 5 138 5.0 3.0 4.0 1.0 169 chr2L 7326472 intergenic not near genes chr2L 7326556 intergenic not near genes chr2L 7326641 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-441 154 chr2L 7335196 7335228 chr2L 7335313 7335345 4 117 3.0 3.5 3.2 1.0 149 chr2L 7335196 intron Wnt6 + chr2L 7335270 intron Wnt6 + chr2L 7335345 intron Wnt6 + chr2L_4_7335001 chr2L_7335001 RAL-441 155 chr2L 7343306 7343357 chr2L 7350442 7350493 roo 14 7132 2.5 3.0 2.8 3.7 7187 chr2L 7343306 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350493 intron Wnt6 + chr2L_14_7345001 chr2L_7345001 RAL-441 156 chr2L 7432216 7432255 chr2L 7432314 7432341 15 99 3.5 3.0 3.2 3.6 125 chr2L 7432216 intron CG5958 - chr2L 7432278 intron CG5958 - chr2L 7432341 intron CG5958 - chr2L_15_7430001 chr2L_7430001 RAL-441 157 chr2L 7502736 7502768 chr2L 7502811 7502860 15 91 5.5 8.0 6.8 1.9 124 chr2L 7502736 intron RapGAP1 - chr2L 7502798 intron RapGAP1 - chr2L 7502860 intron RapGAP1 - chr2L_15_7500001 chr2L_7500001 RAL-441 158 chr2L 7519168 7519201 chr2L 7519263 7519309 5 106 1.0 4.0 2.5 1.4 141 chr2L 7519168 intron RapGAP1 - chr2L 7519238 intron RapGAP1 - chr2L 7519309 intron RapGAP1 - chr2L_5_7515001 chr2L_7515001 RAL-441 159 chr2L 7555206 7555232 chr2L 7555303 7555329 11 95 1.0 1.5 1.2 5.0 123 chr2L 7555206 intron RapGAP1 - chr2L 7555268 intron RapGAP1 - chr2L 7555329 intron RapGAP1 - chr2L_11_7555001 chr2L_7555001 RAL-441 160 chr2L 7579172 7579211 chr2L 7579383 7579422 BS 5 211 3.0 0.0 1.5 2.0 250 chr2L 7579172 intergenic RapGAP1 - chr2L 7579297 intergenic RapGAP1 - chr2L 7579422 intergenic RapGAP1 - chr2L_5_7575001 chr2L_7575001 RAL-441 161 chr2L 7636359 7636372 chr2L 7636483 7636496 4 123 4.0 1.5 2.8 1.1 137 chr2L 7636359 intron CR44799 + chr2L 7636428 intron CR44799 + chr2L 7636496 5` UTR CR44799 + chr2L_4_7635001 chr2L_7635001 RAL-441 162 chr2L 7650008 7650028 chr2L 7650104 7650122 6 96 3.0 0.0 1.5 2.4 114 chr2L 7650008 intron Slob - chr2L 7650065 intron Slob - chr2L 7650122 intron Slob - chr2L_6_7650001 chr2L_7650001 RAL-441 163 chr2L 7715061 7715101 chr2L 7718498 7718523 4 3426 27.0 25.5 26.2 0.1 3462 chr2L 7715061 intron CG33296 - chr2L 7716792 intergenic CG33296 -,CG13793 - chr2L 7718523 intron CG13793 - chr2L_4_7715001 chr2L_7715001 RAL-441 164 chr2L 7768838 7768852 chr2L 7768934 7768940 6 93 0.0 3.0 1.5 2.4 102 chr2L 7768838 intron CG7191 + chr2L 7768889 intron CG7191 + chr2L 7768940 intron CG7191 + chr2L_6_7765001 chr2L_7765001 RAL-441 165 chr2L 7768855 7768878 chr2L 7768931 7768974 5 87 0.0 2.5 1.2 2.3 119 chr2L 7768855 intron CG7191 + chr2L 7768914 intron CG7191 + chr2L 7768974 intron CG7191 + chr2L_5_7765001 chr2L_7765001 RAL-441 166 chr2L 7867553 7867597 chr2L 7867667 7867711 13 114 2.5 3.5 3.0 3.2 158 chr2L 7867553 intron Proc - chr2L 7867632 intron Proc - chr2L 7867711 intron Proc - chr2L_13_7865001 chr2L_7865001 RAL-441 167 chr2L 7922722 7922773 chr2L 7922823 7922874 17 98 3.0 5.0 4.0 3.4 152 chr2L 7922722 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922874 intron Snoo - chr2L_17_7920001 chr2L_7920001 RAL-441 168 chr2L 7959022 7959073 chr2L 7960453 7960500 pogo 6 1428 4.0 2.0 3.0 1.5 1478 chr2L 7959022 intron Snoo - chr2L 7959761 intron Snoo - chr2L 7960500 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-441 169 chr2L 7965637 7965665 chr2L 7965860 7965883 roo 8 219 2.5 2.5 2.5 2.3 246 chr2L 7965637 intron Snoo - chr2L 7965760 intron Snoo - chr2L 7965883 intron Snoo - chr2L_8_7965001 chr2L_7965001 RAL-441 170 chr2L 7977092 7977113 chr2L 7984086 7984106 297 6 6991 3.5 7.0 5.2 1.0 7014 chr2L 7977092 intron Snoo - chr2L 7980599 intron Snoo - chr2L 7984106 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-441 171 chr2L 8156556 8156597 chr2L 8156700 8156741 10 144 4.5 3.5 4.0 2.0 185 chr2L 8156556 intron,intron CG8552 -,CG43394 + chr2L 8156648 intron,intron CG8552 -,CG43394 + chr2L 8156741 intron,intron CG8552 -,CG43394 + chr2L_10_8155001 chr2L_8155001 RAL-441 172 chr2L 8167124 8167176 chr2L 8167235 8167286 9 104 3.5 4.0 3.8 1.9 162 chr2L 8167124 intron Piezo + chr2L 8167205 intron Piezo + chr2L 8167286 intron Piezo + chr2L_9_8165001 chr2L_8165001 RAL-441 173 chr2L 8171274 8171295 chr2L 8171375 8171395 5 100 0.0 8.5 4.2 1.0 121 chr2L 8171274 intron Piezo + chr2L 8171334 intron Piezo + chr2L 8171395 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-441 174 chr2L 8231947 8232020 chr2L 8232076 8232118 4 121 0.0 1.5 0.8 2.2 171 chr2L 8231947 intron Pvr - chr2L 8232032 intron Pvr - chr2L 8232118 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-441 175 chr2L 8286275 8286323 chr2L 8286381 8286423 14 101 2.0 3.5 2.8 3.7 148 chr2L 8286275 intron Btk29A - chr2L 8286349 intron Btk29A - chr2L 8286423 intron Btk29A - chr2L_14_8285001 chr2L_8285001 RAL-441 176 chr2L 8452401 8452448 chr2L 8461592 8461620 roo 17 9185 3.5 3.5 3.5 3.8 9219 chr2L 8452401 intron fu12 - chr2L 8457010 intron fu12 - chr2L 8461620 intron fu12 - chr2L_17_8455001 chr2L_8455001 RAL-441 177 chr2L 8498200 8498239 chr2L 8498295 8498340 11 100 3.5 3.5 3.5 2.4 140 chr2L 8498200 intron Dh31 - chr2L 8498270 intron Dh31 - chr2L 8498340 intron Dh31 - chr2L_11_8495001 chr2L_8495001 RAL-441 178 chr2L 8538149 8538166 chr2L 8538245 8538248 7 91 5.0 0.0 2.5 2.0 99 chr2L 8538149 intron CG17834 + chr2L 8538198 intron CG17834 + chr2L 8538248 intron CG17834 + chr2L_7_8535001 chr2L_8535001 RAL-441 179 chr2L 8554345 8554389 chr2L 8554461 8554505 8 112 2.0 4.5 3.2 1.9 160 chr2L 8554345 intron Sema-1a + chr2L 8554425 intron Sema-1a + chr2L 8554505 intron Sema-1a + chr2L_8_8550001 chr2L_8550001 RAL-441 180 chr2L 8588888 8588927 chr2L 8588999 8589030 14 109 5.0 5.0 5.0 2.3 142 chr2L 8588888 intron Sema-1a + chr2L 8588959 intron Sema-1a + chr2L 8589030 intron Sema-1a + chr2L_14_8585001 chr2L_8585001 RAL-441 181 chr2L 8594469 8594489 chr2L 8601543 8601563 297 4 7074 3.5 5.5 4.5 0.7 7094 chr2L 8594469 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598016 intron Sema-1a + chr2L 8601563 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-441 182 chr2L 8612846 8612869 chr2L 8612942 8612951 6 92 3.0 6.0 4.5 1.1 105 chr2L 8612846 intron Sema-1a + chr2L 8612898 intron Sema-1a + chr2L 8612951 intron Sema-1a + chr2L_6_8610001 chr2L_8610001 RAL-441 183 chr2L 8698306 8698351 chr2L 8698465 8698507 13 155 3.5 0.0 1.8 4.6 201 chr2L 8698306 intron Hnf4 - chr2L 8698406 intron Hnf4 - chr2L 8698507 intron Hnf4 - chr2L_13_8695001 chr2L_8695001 RAL-441 184 chr2L 8723096 8723146 chr2L 8731493 8731541 Tirant 11 8396 2.5 5.5 4.0 2.2 8445 chr2L 8723096 intron raw - chr2L 8727318 intron raw - chr2L 8731541 intron raw - chr2L_11_8725001 chr2L_8725001 RAL-441 185 chr2L 8786538 8786573 chr2L 8786645 8786680 9 107 1.5 9.5 5.5 1.4 142 chr2L 8786538 intergenic not near genes chr2L 8786609 intergenic not near genes chr2L 8786680 intergenic not near genes chr2L_9_8785001 chr2L_8785001 RAL-441 186 chr2L 8788759 8788789 chr2L 8788869 8788900 5 111 0.5 6.0 3.2 1.2 141 chr2L 8788759 intergenic not near genes chr2L 8788830 intergenic not near genes chr2L 8788900 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-441 187 chr2L 8799783 8799831 chr2L 8799919 8799959 11 123 2.0 4.0 3.0 2.8 176 chr2L 8799783 intergenic not near genes chr2L 8799871 intergenic not near genes chr2L 8799959 intergenic not near genes chr2L_11_8795001 chr2L_8795001 RAL-441 188 chr2L 8811843 8811873 chr2L 8811921 8811926 8 84 3.5 4.5 4.0 1.6 83 chr2L 8811843 intergenic not near genes chr2L 8811884 intergenic not near genes chr2L 8811926 intergenic not near genes chr2L_8_8810001 chr2L_8810001 RAL-441 189 chr2L 8902428 8902487 chr2L 8902596 8902621 6 162 1.0 3.0 2.0 2.0 193 chr2L 8902428 intron CG34398 + chr2L 8902524 intron CG34398 + chr2L 8902621 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-441 190 chr2L 8945399 8945447 chr2L 8945505 8945553 9 99 4.5 3.0 3.8 1.9 154 chr2L 8945399 exon C1GalTA - chr2L 8945476 5` UTR C1GalTA - chr2L 8945553 intron C1GalTA - chr2L_9_8945001 chr2L_8945001 RAL-441 191 chr2L 8946703 8946735 chr2L 8946832 8946858 13 124 3.5 5.5 4.5 2.4 155 chr2L 8946703 intron C1GalTA - chr2L 8946780 intron C1GalTA - chr2L 8946858 intron C1GalTA - chr2L_13_8945001 chr2L_8945001 RAL-441 192 chr2L 8956222 8956236 chr2L 8956302 8956333 5 93 1.5 1.5 1.5 2.0 111 chr2L 8956222 intron CG31886 - chr2L 8956278 intron CG31886 - chr2L 8956333 intron CG31886 - chr2L_5_8955001 chr2L_8955001 RAL-441 193 chr2L 8976208 8976253 chr2L 8976319 8976361 11 100 0.5 1.5 1.0 5.5 153 chr2L 8976208 intergenic not near genes chr2L 8976284 intergenic not near genes chr2L 8976361 intergenic not near genes chr2L_11_8975001 chr2L_8975001 RAL-441 194 chr2L 8997267 8997281 chr2L 8997611 8997627 10 345 25.0 26.5 25.8 0.4 360 chr2L 8997267 5` UTR alien - chr2L 8997447 intergenic alien -,CG18661 + chr2L 8997627 5` UTR CG18661 + chr2L_10_8995001 chr2L_8995001 RAL-441 195 chr2L 8997260 8997314 chr2L 8997629 8997658 7 351 29.5 27.0 28.2 0.2 398 chr2L 8997260 exon alien - chr2L 8997459 intergenic alien -,CG18661 + chr2L 8997658 5` UTR CG18661 + chr2L_7_8995001 chr2L_8995001 RAL-441 196 chr2L 9000264 9000313 chr2L 9007794 9007815 roo 11 7526 9.5 5.0 7.2 1.3 7551 chr2L 9000264 intergenic Try29F + chr2L 9004040 intergenic not near genes chr2L 9007815 intergenic not near genes chr2L_11_9000001 chr2L_9000001 RAL-441 197 chr2L 9018040 9018093 chr2L 9018165 9018210 18 122 4.0 3.0 3.5 4.0 170 chr2L 9018040 intergenic not near genes chr2L 9018125 intergenic not near genes chr2L 9018210 intergenic not near genes chr2L_18_9015001 chr2L_9015001 RAL-441 198 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133321 12.5 19.0 15.8 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-441 199 chr2L 9202069 9202087 chr2L 9202131 9202150 5 65 3.5 3.5 3.5 1.1 81 chr2L 9202069 intron tai + chr2L 9202110 intron tai + chr2L 9202150 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-441 200 chr2L 9212705 9212745 chr2L 9212800 9212832 10 88 4.0 5.0 4.5 1.8 127 chr2L 9212705 intron tai + chr2L 9212768 intron tai + chr2L 9212832 intron tai + chr2L_10_9210001 chr2L_9210001 RAL-441 201 chr2L 9264328 9264381 chr2L 9264445 9264501 15 119 5.0 1.0 3.0 3.8 173 chr2L 9264328 intron Ggamma30A + chr2L 9264414 intron Ggamma30A + chr2L 9264501 intron Ggamma30A + chr2L_15_9260001 chr2L_9260001 RAL-441 202 chr2L 9270722 9270760 chr2L 9270837 9270875 7 110 4.0 2.0 3.0 1.8 153 chr2L 9270722 intron Ggamma30A + chr2L 9270798 intron Ggamma30A + chr2L 9270875 intron Ggamma30A + chr2L_7_9270001 chr2L_9270001 RAL-441 203 chr2L 9285013 9285034 chr2L 9285109 9285118 4 91 2.5 2.5 2.5 1.1 105 chr2L 9285013 intron Ggamma30A + chr2L 9285066 intron Ggamma30A + chr2L 9285118 intron Ggamma30A + chr2L_4_9285001 chr2L_9285001 RAL-441 204 chr2L 9287304 9287355 chr2L 9287421 9287472 13 116 2.5 2.0 2.2 4.1 168 chr2L 9287304 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287472 intron Ggamma30A + chr2L_13_9285001 chr2L_9285001 RAL-441 205 chr2L 9297359 9297405 chr2L 9297455 9297502 14 93 3.0 2.5 2.8 3.7 143 chr2L 9297359 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297502 3` UTR Ggamma30A + chr2L_14_9295001 chr2L_9295001 RAL-441 206 chr2L 9321711 9321753 chr2L 9321807 9321849 5 96 1.5 0.5 1.0 2.5 138 chr2L 9321711 intergenic not near genes chr2L 9321780 intergenic not near genes chr2L 9321849 intergenic not near genes chr2L_5_9320001 chr2L_9320001 RAL-441 207 chr2L 9346727 9346764 chr2L 9346833 9346870 4 108 5.5 0.5 3.0 1.0 143 chr2L 9346727 intergenic not near genes chr2L 9346798 intergenic not near genes chr2L 9346870 intergenic not near genes chr2L_4_9345001 chr2L_9345001 RAL-441 208 chr2L 9380223 9380251 chr2L 9380338 9380366 6 115 4.0 4.0 4.0 1.2 143 chr2L 9380223 exon Shawl - chr2L 9380294 intron Shawl - chr2L 9380366 intron Shawl - chr2L_6_9380001 chr2L_9380001 RAL-441 209 chr2L 9387229 9387274 chr2L 9387347 9387390 8 116 1.5 2.0 1.8 2.9 161 chr2L 9387229 intron Shawl - chr2L 9387310 intron Shawl - chr2L 9387390 intron,5` UTR Shawl -,Aldh + chr2L_8_9385001 chr2L_9385001 RAL-441 210 chr2L 9393504 9393523 chr2L 9396490 9396509 jockey 6 2985 0.0 7.0 3.5 1.3 3005 chr2L 9393504 intron Shawl - chr2L 9395006 intron Shawl - chr2L 9396509 intron Shawl - chr2L_6_9395001 chr2L_9395001 RAL-441 211 chr2L 9470085 9470121 chr2L 9470184 9470186 5 92 2.0 2.5 2.2 1.6 101 chr2L 9470085 intergenic CR43769 + chr2L 9470136 intergenic CR43769 + chr2L 9470186 intergenic CR43769 + chr2L_5_9470001 chr2L_9470001 RAL-441 212 chr2L 9502894 9502950 chr2L 9503017 9503073 14 128 35.0 29.5 32.2 0.4 179 chr2L 9502894 intron CG33298 + chr2L 9502984 intron CG33298 + chr2L 9503073 intron CG33298 + chr2L_14_9500001 chr2L_9500001 RAL-441 213 chr2L 9719754 9719765 chr2L 9719858 9719868 4 104 0.0 1.0 0.5 2.7 114 chr2L 9719754 intron Nckx30C - chr2L 9719811 intron Nckx30C - chr2L 9719868 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-441 214 chr2L 9873747 9873792 chr2L 9873863 9873908 13 113 5.0 4.5 4.8 2.2 161 chr2L 9873747 intron nAChRalpha6 - chr2L 9873828 intron nAChRalpha6 - chr2L 9873908 intron nAChRalpha6 - chr2L_13_9870001 chr2L_9870001 RAL-441 215 chr2L 9973709 9973737 chr2L 9980848 9980869 HMS-Beagle 7 7136 7.5 4.0 5.8 1.0 7160 chr2L 9973709 intergenic not near genes chr2L 9977289 intergenic not near genes chr2L 9980869 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-441 216 chr2L 9973746 9973758 chr2L 9980843 9980897 HMS-Beagle 6 7121 6.0 2.5 4.2 1.2 7151 chr2L 9973746 intergenic not near genes chr2L 9977322 intergenic not near genes chr2L 9980897 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-441 217 chr2L 9982205 9982232 chr2L 9982327 9982350 5 118 0.0 9.5 4.8 0.9 145 chr2L 9982205 intergenic not near genes chr2L 9982278 intergenic not near genes chr2L 9982350 intergenic not near genes chr2L_5_9980001 chr2L_9980001 RAL-441 218 chr2L 9986365 9986373 chr2L 9986445 9986472 4 90 2.0 3.5 2.8 1.1 107 chr2L 9986365 intron bib + chr2L 9986418 intron bib + chr2L 9986472 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-441 219 chr2L 10051713 10051731 chr2L 10051818 10051836 5 101 5.5 3.0 4.2 1.0 123 chr2L 10051713 5` UTR CR44874 + chr2L 10051774 5` UTR CR44874 + chr2L 10051836 5` UTR CR44874 + chr2L_5_10050001 chr2L_10050001 RAL-441 220 chr2L 10051734 10051742 chr2L 10051812 10051832 7 88 4.0 2.0 3.0 1.8 98 chr2L 10051734 5` UTR CR44874 + chr2L 10051783 5` UTR CR44874 + chr2L 10051832 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-441 221 chr2L 10083032 10083075 chr2L 10083142 10083183 4 110 1.5 3.5 2.5 1.1 151 chr2L 10083032 intron CG44153 - chr2L 10083108 intron CG44153 - chr2L 10083183 intron CG44153 - chr2L_4_10080001 chr2L_10080001 RAL-441 222 chr2L 10087461 10087488 chr2L 10087558 10087580 8 91 5.0 4.0 4.5 1.5 119 chr2L 10087461 intron CG44153 - chr2L 10087520 intron CG44153 - chr2L 10087580 intron CG44153 - chr2L_8_10085001 chr2L_10085001 RAL-441 223 chr2L 10146399 10146445 chr2L 10146509 10146554 8 109 8.5 3.0 5.8 1.2 155 chr2L 10146399 intron,5` UTR CG44153 -,CG4839 + chr2L 10146476 intron,5` UTR CG44153 -,CG4839 + chr2L 10146554 intron,5` UTR CG44153 -,CG4839 + chr2L_8_10145001 chr2L_10145001 RAL-441 224 chr2L 10153199 10153230 chr2L 10153279 10153321 17 89 1.5 1.5 1.5 6.8 122 chr2L 10153199 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153321 intron,intron CG44153 -,CG4839 + chr2L_17_10150001 chr2L_10150001 RAL-441 225 chr2L 10156306 10156350 chr2L 10163796 10163817 blood 8 7485 1.5 7.5 4.5 1.5 7511 chr2L 10156306 intron,3` UTR CG44153 -,CG4839 + chr2L 10160062 intron CG44153 - chr2L 10163817 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-441 226 chr2L 10176023 10176024 chr2L 16071771 16071771 4 5895748 17.0 14.0 15.5 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-441 227 chr2L 10177888 10177922 chr2L 10177987 10178021 9 97 3.0 3.5 3.2 2.1 133 chr2L 10177888 intron CG44153 - chr2L 10177954 intron CG44153 - chr2L 10178021 intron CG44153 - chr2L_9_10175001 chr2L_10175001 RAL-441 228 chr2L 10191440 10191491 chr2L 10191542 10191592 8 102 4.0 2.5 3.2 1.9 152 chr2L 10191440 intron,5` UTR Sur -,CG31874 - chr2L 10191516 intron Sur - chr2L 10191592 intron Sur - chr2L_8_10190001 chr2L_10190001 RAL-441 229 chr2L 10259685 10259738 chr2L 10259786 10259834 6 101 3.0 0.0 1.5 2.4 149 chr2L 10259685 5` UTR Pten - chr2L 10259760 intron Pten - chr2L 10259834 intron Pten - chr2L_6_10255001 chr2L_10255001 RAL-441 230 chr2L 10260284 10260335 chr2L 10260385 10260414 12 94 5.5 3.0 4.2 2.3 130 chr2L 10260284 5` UTR Pten - chr2L 10260349 5` UTR Pten - chr2L 10260414 5` UTR Pten - chr2L_12_10260001 chr2L_10260001 RAL-441 231 chr2L 10314497 10314521 chr2L 10314626 10314650 4 126 4.0 3.0 3.5 0.9 153 chr2L 10314497 intergenic CG5384 -,CG4972 + chr2L 10314574 intergenic CG5384 -,CG4972 + chr2L 10314650 intergenic CG4972 +,CG5384 - chr2L_4_10310001 chr2L_10310001 RAL-441 232 chr2L 10458193 10458213 chr2L 10458309 10458330 6 116 0.0 3.0 1.5 2.4 137 chr2L 10458193 intron LM408 + chr2L 10458262 intron LM408 + chr2L 10458330 intron LM408 + chr2L_6_10455001 chr2L_10455001 RAL-441 233 chr2L 10592831 10592840 chr2L 10600510 10600522 opus 5 7680 3.5 4.5 4.0 1.0 7691 chr2L 10592831 intron Trim9 + chr2L 10596676 intron Trim9 + chr2L 10600522 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-441 234 chr2L 10592849 10592864 chr2L 10600504 10600545 opus 7 7675 2.5 3.0 2.8 1.8 7696 chr2L 10592849 intron Trim9 + chr2L 10596697 intron Trim9 + chr2L 10600545 intron Trim9 + chr2L_7_10595001 chr2L_10595001 RAL-441 235 chr2L 10604209 10604221 chr2L 10604304 10604323 5 97 1.5 3.0 2.2 1.6 114 chr2L 10604209 intron Trim9 + chr2L 10604266 intron Trim9 + chr2L 10604323 intron Trim9 + chr2L_5_10600001 chr2L_10600001 RAL-441 236 chr2L 10640622 10640668 chr2L 10640731 10640777 17 107 4.0 3.5 3.8 3.5 155 chr2L 10640622 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640777 exon CG31872 + chr2L_17_10640001 chr2L_10640001 RAL-441 237 chr2L 10688566 10688574 chr2L 10688623 10688670 4 86 0.5 1.5 1.0 2.0 104 chr2L 10688566 intergenic CG7294 - chr2L 10688618 intergenic CG7294 - chr2L 10688670 intergenic CG7294 - chr2L_4_10685001 chr2L_10685001 RAL-441 238 chr2L 10689990 10690008 chr2L 10690083 10690122 7 107 4.0 2.5 3.2 1.7 132 chr2L 10689990 intergenic not near genes chr2L 10690056 intergenic not near genes chr2L 10690122 intergenic not near genes chr2L_7_10690001 chr2L_10690001 RAL-441 239 chr2L 10692768 10692824 chr2L 10692886 10692941 12 117 1.0 3.5 2.2 3.8 173 chr2L 10692768 intergenic CG17108 - chr2L 10692854 intergenic CG17108 - chr2L 10692941 3` UTR CG17108 - chr2L_12_10690001 chr2L_10690001 RAL-441 240 chr2L 10721270 10721307 chr2L 10721369 10721404 9 96 1.5 0.0 0.8 5.0 134 chr2L 10721270 intergenic not near genes chr2L 10721337 intergenic not near genes chr2L 10721404 intergenic not near genes chr2L_9_10720001 chr2L_10720001 RAL-441 241 chr2L 10852148 10852162 chr2L 10852257 10852271 4 109 7.5 5.5 6.5 0.5 123 chr2L 10852148 intron CG43129 + chr2L 10852210 intron CG43129 + chr2L 10852271 intron CG43129 + chr2L_4_10850001 chr2L_10850001 RAL-441 242 chr2L 10862838 10862849 chr2L 10864469 10864481 Rt1c 4 1632 7.5 9.5 8.5 0.4 1643 chr2L 10862838 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-441 243 chr2L 10862859 10862881 chr2L 10864454 10864455 Rt1c 12 1598 3.0 3.0 3.0 3.0 1596 chr2L 10862859 3` UTR CR43807 - chr2L 10863657 intron CR43807 - chr2L 10864455 intron CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-441 244 chr2L 10912969 10912991 chr2L 10913068 10913090 8 96 3.5 5.0 4.2 1.5 121 chr2L 10912969 intergenic not near genes chr2L 10913030 intergenic not near genes chr2L 10913090 intergenic not near genes chr2L_8_10910001 chr2L_10910001 RAL-441 245 chr2L 10919781 10919829 chr2L 10919890 10919938 11 109 2.0 2.0 2.0 3.7 157 chr2L 10919781 intron dpr2 - chr2L 10919860 intron dpr2 - chr2L 10919938 intron dpr2 - chr2L_11_10915001 chr2L_10915001 RAL-441 246 chr2L 10936492 10936538 chr2L 10936644 10936695 15 153 2.5 5.0 3.8 3.1 203 chr2L 10936492 intron dpr2 - chr2L 10936594 intron dpr2 - chr2L 10936695 intron,5` UTR dpr2 -,CG14072 + chr2L_15_10935001 chr2L_10935001 RAL-441 247 chr2L 10945074 10945105 chr2L 10945166 10945170 10 85 3.5 6.0 4.8 1.7 96 chr2L 10945074 intron dpr2 - chr2L 10945122 intron dpr2 - chr2L 10945170 intron dpr2 - chr2L_10_10945001 chr2L_10945001 RAL-441 248 chr2L 10946948 10946970 chr2L 10956164 10956205 roo 7 9223 3.5 5.0 4.2 1.3 9257 chr2L 10946948 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956205 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-441 249 chr2L 11152731 11152741 chr2L 11152819 11152843 4 94 2.0 2.0 2.0 1.3 112 chr2L 11152731 intron CG6287 - chr2L 11152787 intron CG6287 - chr2L 11152843 intron CG6287 - chr2L_4_11150001 chr2L_11150001 RAL-441 250 chr2L 11292377 11292406 chr2L 11292472 11292507 10 97 3.0 5.5 4.2 1.9 130 chr2L 11292377 intergenic not near genes chr2L 11292442 intergenic not near genes chr2L 11292507 intergenic not near genes chr2L_10_11290001 chr2L_11290001 RAL-441 251 chr2L 11298817 11298854 chr2L 11298914 11298951 8 97 1.0 2.0 1.5 3.2 134 chr2L 11298817 intergenic not near genes chr2L 11298884 intergenic not near genes chr2L 11298951 intergenic not near genes chr2L_8_11295001 chr2L_11295001 RAL-441 252 chr2L 11356418 11356422 chr2L 11356520 11356539 4 113 2.0 1.5 1.8 1.4 121 chr2L 11356418 intergenic not near genes chr2L 11356478 intergenic not near genes chr2L 11356539 intergenic not near genes chr2L_4_11355001 chr2L_11355001 RAL-441 253 chr2L 11455552 11455595 chr2L 11455649 11455660 10 93 2.0 4.5 3.2 2.4 108 chr2L 11455552 intergenic not near genes chr2L 11455606 intergenic not near genes chr2L 11455660 intergenic not near genes chr2L_10_11455001 chr2L_11455001 RAL-441 254 chr2L 11491131 11491150 chr2L 11491208 11491216 4 74 2.5 3.0 2.8 1.1 85 chr2L 11491131 intergenic not near genes chr2L 11491174 intergenic not near genes chr2L 11491216 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-441 255 chr2L 11540578 11540595 chr2L 11548000 11548015 Tabor 4 7422 3.5 5.0 4.2 0.8 7437 chr2L 11540578 intergenic not near genes chr2L 11544296 intergenic not near genes chr2L 11548015 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-441 256 chr2L 11555393 11555423 chr2L 11555533 11555562 5 139 4.5 1.0 2.8 1.3 169 chr2L 11555393 intergenic not near genes chr2L 11555478 intergenic not near genes chr2L 11555562 intergenic not near genes chr2L_5_11555001 chr2L_11555001 RAL-441 257 chr2L 11563621 11563662 chr2L 11568842 11568886 copia 12 5222 2.5 4.5 3.5 2.7 5265 chr2L 11563621 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568886 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-441 258 chr2L 11610522 11610570 chr2L 11610621 11610663 5 97 3.5 0.5 2.0 1.7 141 chr2L 11610522 intron,3` UTR kek2 +,spag4 - chr2L 11610592 intron,3` UTR kek2 +,spag4 - chr2L 11610663 intron,3` UTR kek2 +,spag4 - chr2L_5_11610001 chr2L_11610001 RAL-441 259 chr2L 11614031 11614086 chr2L 11615546 11615553 hopper2 5 1492 3.5 3.5 3.5 1.1 1522 chr2L 11614031 intron kek2 + chr2L 11614792 intron kek2 + chr2L 11615553 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-441 260 chr2L 11679543 11679586 chr2L 11679641 11679685 10 97 5.5 2.0 3.8 2.1 142 chr2L 11679543 intergenic not near genes chr2L 11679614 intergenic not near genes chr2L 11679685 intergenic not near genes chr2L_10_11675001 chr2L_11675001 RAL-441 261 chr2L 11713490 11713532 chr2L 11720975 11720978 blood 8 7481 3.5 7.5 5.5 1.2 7488 chr2L 11713490 intergenic not near genes chr2L 11717234 intergenic not near genes chr2L 11720978 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-441 262 chr2L 11728624 11728663 chr2L 11728894 11728933 13 265 3.5 2.0 2.8 3.4 309 chr2L 11728624 intergenic not near genes chr2L 11728778 intergenic not near genes chr2L 11728933 intergenic not near genes chr2L_13_11725001 chr2L_11725001 RAL-441 263 chr2L 11752853 11752878 chr2L 11753159 11753188 5 305 4.0 4.0 4.0 1.0 335 chr2L 11752853 intergenic CG42470 - chr2L 11753020 3` UTR CG42470 - chr2L 11753188 3` UTR CG42470 - chr2L_5_11750001 chr2L_11750001 RAL-441 264 chr2L 11820406 11820468 chr2L 11820511 11820549 11 98 0.5 4.0 2.2 3.4 143 chr2L 11820406 intron Pde1c - chr2L 11820478 intron Pde1c - chr2L 11820549 intron Pde1c - chr2L_11_11820001 chr2L_11820001 RAL-441 265 chr2L 11841349 11841387 chr2L 11841447 11841485 4 94 3.0 0.5 1.8 1.4 136 chr2L 11841349 intron Pde1c - chr2L 11841417 intron Pde1c - chr2L 11841485 intron Pde1c - chr2L_4_11840001 chr2L_11840001 RAL-441 266 chr2L 11856166 11856216 chr2L 11856357 11856407 9 190 3.0 2.5 2.8 2.4 241 chr2L 11856166 intron Pde1c - chr2L 11856286 intron Pde1c - chr2L 11856407 intron Pde1c - chr2L_9_11855001 chr2L_11855001 RAL-441 267 chr2L 11866994 11867006 chr2L 11867126 11867137 4 131 2.5 1.5 2.0 1.3 143 chr2L 11866994 intron Pde1c - chr2L 11867066 intron Pde1c - chr2L 11867137 intron Pde1c - chr2L_4_11865001 chr2L_11865001 RAL-441 268 chr2L 11976076 11976116 chr2L 11976173 11976213 8 93 5.0 0.5 2.8 2.1 137 chr2L 11976076 intergenic not near genes chr2L 11976144 intergenic not near genes chr2L 11976213 intergenic not near genes chr2L_8_11975001 chr2L_11975001 RAL-441 269 chr2L 12031376 12031409 chr2L 12031477 12031486 5 91 1.5 2.5 2.0 1.7 110 chr2L 12031376 intron dmGlut + chr2L 12031431 intron dmGlut + chr2L 12031486 intron dmGlut + chr2L_5_12030001 chr2L_12030001 RAL-441 270 chr2L 12067331 12067333 chr2L 12074403 12074405 297 4 7072 7.5 2.0 4.8 0.7 7074 chr2L 12067331 intergenic not near genes chr2L 12070868 intergenic not near genes chr2L 12074405 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-441 271 chr2L 12067336 12067359 chr2L 12074399 12074419 297 5 7068 4.5 2.0 3.2 1.2 7083 chr2L 12067336 intergenic not near genes chr2L 12070878 intergenic not near genes chr2L 12074419 intergenic not near genes chr2L_5_12070001 chr2L_12070001 RAL-441 272 chr2L 12132703 12132746 chr2L 12132808 12132841 11 102 0.0 1.0 0.5 7.3 138 chr2L 12132703 intron rho-6 - chr2L 12132772 intron rho-6 - chr2L 12132841 intron rho-6 - chr2L_11_12130001 chr2L_12130001 RAL-441 273 chr2L 12187482 12187527 chr2L 12187614 12187666 7 138 0.5 0.0 0.2 5.8 184 chr2L 12187482 intron aret + chr2L 12187574 intron aret + chr2L 12187666 intron aret + chr2L_7_12185001 chr2L_12185001 RAL-441 274 chr2L 12192338 12192368 chr2L 12192483 12192513 6 142 2.0 6.0 4.0 1.2 175 chr2L 12192338 intron aret + chr2L 12192426 intron aret + chr2L 12192513 intron aret + chr2L_6_12190001 chr2L_12190001 RAL-441 275 chr2L 12212218 12212263 chr2L 12212546 12212591 20 325 5.5 4.5 5.0 3.3 373 chr2L 12212218 intron aret + chr2L 12212404 intron aret + chr2L 12212591 intron aret + chr2L_20_12210001 chr2L_12210001 RAL-441 276 chr2L 12272165 12272195 chr2L 12272259 12272291 8 95 2.0 3.0 2.5 2.3 126 chr2L 12272165 intron aret + chr2L 12272228 intron aret + chr2L 12272291 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-441 277 chr2L 12353774 12353824 chr2L 12353873 12353901 12 98 4.5 2.5 3.5 2.7 127 chr2L 12353774 intron bru-2 + chr2L 12353838 intron bru-2 + chr2L 12353901 intron bru-2 + chr2L_12_12350001 chr2L_12350001 RAL-441 278 chr2L 12381108 12381127 chr2L 12381504 12381548 7 408 5.0 3.5 4.2 1.3 440 chr2L 12381108 intron bru-2 + chr2L 12381328 intron bru-2 + chr2L 12381548 intron bru-2 + chr2L_7_12380001 chr2L_12380001 RAL-441 279 chr2L 12480525 12480567 chr2L 12480621 12480660 7 96 1.5 2.5 2.0 2.3 135 chr2L 12480525 intron bun - chr2L 12480592 intron bun - chr2L 12480660 intron bun - chr2L_7_12480001 chr2L_12480001 RAL-441 280 chr2L 12487871 12487918 chr2L 12487967 12488004 17 92 3.0 3.5 3.2 4.0 133 chr2L 12487871 intron bun - chr2L 12487938 intron bun - chr2L 12488004 intron bun - chr2L_17_12485001 chr2L_12485001 RAL-441 281 chr2L 12518522 12518532 chr2L 12518800 12518811 8 278 7.0 7.0 7.0 1.0 289 chr2L 12518522 intron bun - chr2L 12518666 intron bun - chr2L 12518811 intron bun - chr2L_8_12515001 chr2L_12515001 RAL-441 282 chr2L 12518538 12518555 chr2L 12518792 12518834 7 269 4.0 6.5 5.2 1.1 296 chr2L 12518538 intron bun - chr2L 12518686 intron bun - chr2L 12518834 intron bun - chr2L_7_12515001 chr2L_12515001 RAL-441 283 chr2L 12529213 12529254 chr2L 12529385 12529426 10 172 2.5 1.5 2.0 3.3 213 chr2L 12529213 intron bun - chr2L 12529320 intron bun - chr2L 12529426 intron bun - chr2L_10_12525001 chr2L_12525001 RAL-441 284 chr2L 12558308 12558348 chr2L 12565457 12565496 HMS-Beagle 7 7146 2.5 4.5 3.5 1.6 7188 chr2L 12558308 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565496 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-441 285 chr2L 12619888 12619906 chr2L 12619984 12619991 4 93 3.5 2.0 2.8 1.1 103 chr2L 12619888 intron,intron nub +,Ref2 - chr2L 12619940 intron,intron nub +,Ref2 - chr2L 12619991 intron,intron nub +,Ref2 - chr2L_4_12615001 chr2L_12615001 RAL-441 286 chr2L 12643148 12643189 chr2L 12643245 12643286 4 96 0.5 0.0 0.2 3.3 138 chr2L 12643148 intron Ref2 - chr2L 12643217 intron Ref2 - chr2L 12643286 intron Ref2 - chr2L_4_12640001 chr2L_12640001 RAL-441 287 chr2L 12684203 12684242 chr2L 12684304 12684343 7 101 4.0 1.5 2.8 1.8 140 chr2L 12684203 intron pdm2 + chr2L 12684273 intron pdm2 + chr2L 12684343 intron pdm2 + chr2L_7_12680001 chr2L_12680001 RAL-441 288 chr2L 12731039 12731086 chr2L 12735826 12735873 F-element 12 4787 3.0 5.0 4.0 2.4 4834 chr2L 12731039 intron MRP + chr2L 12733456 intron MRP + chr2L 12735873 intron MRP + chr2L_12_12730001 chr2L_12730001 RAL-441 289 chr2L 12772012 12772051 chr2L 12772117 12772155 8 104 3.5 5.5 4.5 1.5 143 chr2L 12772012 intergenic not near genes chr2L 12772084 intergenic not near genes chr2L 12772155 intergenic not near genes chr2L_8_12770001 chr2L_12770001 RAL-441 290 chr2L 12781800 12781815 chr2L 12789252 12789278 Quasimodo 5 7460 5.0 4.5 4.8 0.9 7478 chr2L 12781800 intergenic not near genes chr2L 12785539 intergenic not near genes chr2L 12789278 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-441 291 chr2L 12791587 12791617 chr2L 12795282 12795312 F-element 6 3692 3.0 4.0 3.5 1.3 3725 chr2L 12791587 intergenic not near genes chr2L 12793450 intergenic not near genes chr2L 12795312 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-441 292 chr2L 12791625 12791628 chr2L 12795280 12795321 F-element 5 3677 1.0 4.0 2.5 1.4 3696 chr2L 12791625 intergenic not near genes chr2L 12793473 intergenic not near genes chr2L 12795321 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-441 293 chr2L 12835537 12835576 chr2L 12835666 12835705 5 125 2.0 2.0 2.0 1.7 168 chr2L 12835537 intergenic not near genes chr2L 12835621 intergenic not near genes chr2L 12835705 intergenic not near genes chr2L_5_12835001 chr2L_12835001 RAL-441 294 chr2L 12861676 12861718 chr2L 12863163 12863205 hobo 10 1483 4.0 2.0 3.0 2.5 1529 chr2L 12861676 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863205 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-441 295 chr2L 12891912 12891960 chr2L 12892017 12892065 7 105 1.0 5.0 3.0 1.8 153 chr2L 12891912 intergenic not near genes chr2L 12891988 intergenic not near genes chr2L 12892065 intergenic not near genes chr2L_7_12890001 chr2L_12890001 RAL-441 296 chr2L 12905459 12905500 chr2L 12905560 12905604 8 102 5.0 2.5 3.8 1.7 145 chr2L 12905459 intergenic not near genes chr2L 12905532 intergenic not near genes chr2L 12905604 intergenic not near genes chr2L_8_12905001 chr2L_12905001 RAL-441 297 chr2L 12933832 12933853 chr2L 12941318 12941340 blood 6 7486 7.0 5.0 6.0 0.9 7508 chr2L 12933832 intergenic not near genes chr2L 12937586 intergenic not near genes chr2L 12941340 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-441 298 chr2L 12933855 12933866 chr2L 12941316 12941319 blood 5 7469 6.0 5.0 5.5 0.8 7464 chr2L 12933855 intergenic not near genes chr2L 12937587 intergenic not near genes chr2L 12941319 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-441 299 chr2L 12933867 12933877 chr2L 12941315 12941362 blood 5 7471 4.0 5.0 4.5 0.9 7495 chr2L 12933867 intergenic not near genes chr2L 12937614 intergenic not near genes chr2L 12941362 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-441 300 chr2L 13076815 13076852 chr2L 13076917 13076956 6 105 1.5 0.5 1.0 3.0 141 chr2L 13076815 intergenic not near genes chr2L 13076886 intergenic not near genes chr2L 13076956 intergenic not near genes chr2L_6_13075001 chr2L_13075001 RAL-441 301 chr2L 13235832 13235858 chr2L 13235928 13235954 5 95 1.0 7.5 4.2 1.0 122 chr2L 13235832 intergenic not near genes chr2L 13235893 intergenic not near genes chr2L 13235954 intergenic not near genes chr2L_5_13235001 chr2L_13235001 RAL-441 302 chr2L 13241947 13241953 chr2L 13244351 13244357 BS 5 2404 0.5 1.5 1.0 2.5 2410 chr2L 13241947 5` UTR CR45330 + chr2L 13243152 intron CR45330 + chr2L 13244357 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-441 303 chr2L 13266359 13266412 chr2L 13266466 13266520 14 96 3.5 6.0 4.8 2.4 161 chr2L 13266359 intron CG44085 + chr2L 13266440 intron CG44085 + chr2L 13266520 intron CG44085 + chr2L_14_13265001 chr2L_13265001 RAL-441 304 chr2L 13405629 13405642 chr2L 13410445 13410459 Doc 5 4816 5.0 5.0 5.0 0.8 4830 chr2L 13405629 exon CG7110 + chr2L 13408044 intron CG7110 + chr2L 13410459 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-441 305 chr2L 13405643 13405665 chr2L 13410444 13410481 Doc 13 4814 3.0 4.5 3.8 2.7 4838 chr2L 13405643 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410481 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-441 306 chr2L 13435423 13435470 chr2L 13435549 13435596 6 123 5.0 2.5 3.8 1.2 173 chr2L 13435423 intron CG42784 + chr2L 13435510 intron CG42784 + chr2L 13435596 intron CG42784 + chr2L_6_13435001 chr2L_13435001 RAL-441 307 chr2L 13449470 13449496 chr2L 13456926 13456952 Quasimodo 5 7456 1.0 3.5 2.2 1.6 7482 chr2L 13449470 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453211 intron CG42784 + chr2L 13456952 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-441 308 chr2L 13481443 13481472 chr2L 13482070 13482079 jockey 11 625 4.0 8.0 6.0 1.6 636 chr2L 13481443 intron CG42784 + chr2L 13481761 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_11_13480001 chr2L_13480001 RAL-441 309 chr2L 13536282 13536297 chr2L 13536373 13536383 4 94 2.5 2.5 2.5 1.1 101 chr2L 13536282 intron B4 - chr2L 13536332 intron B4 - chr2L 13536383 intron B4 - chr2L_4_13535001 chr2L_13535001 RAL-441 310 chr2L 13543946 13543969 chr2L 13544042 13544066 6 92 5.0 2.0 3.5 1.3 120 chr2L 13543946 intron B4 - chr2L 13544006 intron B4 - chr2L 13544066 intron B4 - chr2L_6_13540001 chr2L_13540001 RAL-441 311 chr2L 13574151 13574189 chr2L 13574250 13574287 4 98 0.0 3.0 1.5 1.6 136 chr2L 13574151 intron kuz + chr2L 13574219 intron kuz + chr2L 13574287 intron kuz + chr2L_4_13570001 chr2L_13570001 RAL-441 312 chr2L 13715262 13715292 chr2L 13715409 13715439 8 146 4.5 1.0 2.8 2.1 177 chr2L 13715262 intron CG31814 - chr2L 13715350 intron CG31814 - chr2L 13715439 intron CG31814 - chr2L_8_13715001 chr2L_13715001 RAL-441 313 chr2L 13715295 13715306 chr2L 13715405 13715453 5 133 3.0 1.0 2.0 1.7 158 chr2L 13715295 intron CG31814 - chr2L 13715374 intron CG31814 - chr2L 13715453 intron CG31814 - chr2L_5_13715001 chr2L_13715001 RAL-441 314 chr2L 13733758 13733785 chr2L 13733897 13733922 7 137 1.5 4.0 2.8 1.8 164 chr2L 13733758 intergenic not near genes chr2L 13733840 intergenic not near genes chr2L 13733922 intergenic not near genes chr2L_7_13730001 chr2L_13730001 RAL-441 315 chr2L 13749194 13749210 chr2L 13749297 13749312 4 102 0.5 0.0 0.2 3.3 118 chr2L 13749194 intron,intron CR44846 +,TM9SF4 + chr2L 13749253 intron,intron CR44846 +,TM9SF4 + chr2L 13749312 intron,intron CR44846 +,TM9SF4 + chr2L_4_13745001 chr2L_13745001 RAL-441 316 chr2L 13800159 13800207 chr2L 13800283 13800331 13 122 1.0 3.5 2.2 4.1 172 chr2L 13800159 intergenic Sec71 + chr2L 13800245 intergenic not near genes chr2L 13800331 intergenic not near genes chr2L_13_13800001 chr2L_13800001 RAL-441 317 chr2L 13853086 13853094 chr2L 13862241 13862263 roo 6 9166 9.0 4.0 6.5 0.8 9177 chr2L 13853086 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862263 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-441 318 chr2L 13853096 13853101 chr2L 13862237 13862271 roo 4 9163 7.5 3.5 5.5 0.6 9175 chr2L 13853096 intron CenG1A + chr2L 13857684 intron CenG1A + chr2L 13862271 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-441 319 chr2L 13913584 13913603 chr2L 13913717 13913737 11 133 5.5 5.0 5.2 1.8 153 chr2L 13913584 intergenic not near genes chr2L 13913660 intergenic not near genes chr2L 13913737 intergenic not near genes chr2L_11_13910001 chr2L_13910001 RAL-441 320 chr2L 14010407 14010425 chr2L 14010485 14010521 6 89 3.0 5.0 4.0 1.2 114 chr2L 14010407 intergenic not near genes chr2L 14010464 intergenic not near genes chr2L 14010521 intergenic not near genes chr2L_6_14010001 chr2L_14010001 RAL-441 321 chr2L 14071981 14072022 chr2L 14072177 14072220 4 189 6.0 2.5 4.2 0.8 239 chr2L 14071981 intron nAChRalpha5 + chr2L 14072100 intron nAChRalpha5 + chr2L 14072220 intron nAChRalpha5 + chr2L_4_14070001 chr2L_14070001 RAL-441 322 chr2L 14078771 14078807 chr2L 14078878 14078913 10 104 4.0 4.5 4.2 1.9 142 chr2L 14078771 intron nAChRalpha5 + chr2L 14078842 intron nAChRalpha5 + chr2L 14078913 intron nAChRalpha5 + chr2L_10_14075001 chr2L_14075001 RAL-441 323 chr2L 14078809 14078816 chr2L 14078876 14078922 5 94 3.0 4.5 3.8 1.0 113 chr2L 14078809 intron nAChRalpha5 + chr2L 14078866 intron nAChRalpha5 + chr2L 14078922 intron nAChRalpha5 + chr2L_5_14075001 chr2L_14075001 RAL-441 324 chr2L 14160689 14160700 chr2L 14160778 14160806 6 102 1.5 0.5 1.0 3.0 117 chr2L 14160689 intergenic CG17341 +,CG43332 - chr2L 14160748 intergenic CG17341 +,CG43332 - chr2L 14160806 intergenic CG17341 +,CG43332 - chr2L_6_14160001 chr2L_14160001 RAL-441 325 chr2L 14180042 14180092 chr2L 14180138 14180188 15 92 2.0 3.0 2.5 4.3 146 chr2L 14180042 intron CG43333 - chr2L 14180115 intron CG43333 - chr2L 14180188 intron CG43333 - chr2L_15_14180001 chr2L_14180001 RAL-441 326 chr2L 14271929 14271944 chr2L 14272175 14272192 5 247 7.5 4.0 5.8 0.7 263 chr2L 14271929 intron wb + chr2L 14272060 intron wb + chr2L 14272192 intron wb + chr2L_5_14270001 chr2L_14270001 RAL-441 327 chr2L 14271945 14271960 chr2L 14272174 14272206 5 240 6.0 4.0 5.0 0.8 261 chr2L 14271945 intron wb + chr2L 14272076 intron wb + chr2L 14272206 intron wb + chr2L_5_14270001 chr2L_14270001 RAL-441 328 chr2L 14313176 14313215 chr2L 14313340 14313379 12 162 3.5 5.5 4.5 2.2 203 chr2L 14313176 intron wb + chr2L 14313278 intron wb + chr2L 14313379 intron wb + chr2L_12_14310001 chr2L_14310001 RAL-441 329 chr2L 14369122 14369135 chr2L 14369257 14369270 6 136 4.5 4.5 4.5 1.1 148 chr2L 14369122 intergenic not near genes chr2L 14369196 intergenic not near genes chr2L 14369270 intergenic not near genes chr2L_6_14365001 chr2L_14365001 RAL-441 330 chr2L 14369136 14369143 chr2L 14369251 14369279 4 131 4.5 4.0 4.2 0.8 143 chr2L 14369136 intergenic not near genes chr2L 14369208 intergenic not near genes chr2L 14369279 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-441 331 chr2L 14378023 14378065 chr2L 14378369 14378411 5 343 1.5 0.5 1.0 2.5 388 chr2L 14378023 intergenic ppk - chr2L 14378217 3` UTR ppk - chr2L 14378411 3` UTR ppk - chr2L_5_14375001 chr2L_14375001 RAL-441 332 chr2L 14588365 14588418 chr2L 14588538 14588577 17 170 3.5 4.0 3.8 3.5 212 chr2L 14588365 intergenic CG42680 - chr2L 14588471 intergenic CG42680 - chr2L 14588577 intergenic CG42680 - chr2L_17_14585001 chr2L_14585001 RAL-441 333 chr2L 14642552 14642598 chr2L 14651735 14651781 roo 10 9180 7.0 3.5 5.2 1.6 9229 chr2L 14642552 intron osp - chr2L 14647166 intron osp - chr2L 14651781 intron osp - chr2L_10_14645001 chr2L_14645001 RAL-441 334 chr2L 14694239 14694288 chr2L 14694379 14694432 12 139 1.5 4.0 2.8 3.2 193 chr2L 14694239 intergenic not near genes chr2L 14694336 intergenic not near genes chr2L 14694432 intergenic not near genes chr2L_12_14690001 chr2L_14690001 RAL-441 335 chr2L 14707195 14707234 chr2L 14707332 14707373 7 139 3.5 1.5 2.5 2.0 178 chr2L 14707195 intergenic not near genes chr2L 14707284 intergenic not near genes chr2L 14707373 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-441 336 chr2L 14768920 14768949 chr2L 14769016 14769047 6 94 1.0 3.5 2.2 1.9 127 chr2L 14768920 intergenic not near genes chr2L 14768984 intergenic not near genes chr2L 14769047 intergenic not near genes chr2L_6_14765001 chr2L_14765001 RAL-441 337 chr2L 14778805 14778833 chr2L 14779093 14779099 8 292 4.0 4.0 4.0 1.6 294 chr2L 14778805 intergenic not near genes chr2L 14778952 intergenic not near genes chr2L 14779099 intergenic not near genes chr2L_8_14775001 chr2L_14775001 RAL-441 338 chr2L 14803878 14803904 chr2L 14809080 14809127 copia 10 5217 5.0 4.5 4.8 1.7 5249 chr2L 14803878 intergenic not near genes chr2L 14806502 intergenic not near genes chr2L 14809127 intergenic not near genes chr2L_10_14805001 chr2L_14805001 RAL-441 339 chr2L 14839737 14839778 chr2L 14839833 14839870 7 94 2.5 2.5 2.5 2.0 133 chr2L 14839737 intergenic not near genes chr2L 14839804 intergenic not near genes chr2L 14839870 intergenic not near genes chr2L_7_14835001 chr2L_14835001 RAL-441 340 chr2L 14840981 14841008 chr2L 14841073 14841086 9 101 4.0 7.0 5.5 1.4 105 chr2L 14840981 3` UTR CR43805 - chr2L 14841034 3` UTR CR43805 - chr2L 14841086 3` UTR CR43805 - chr2L_9_14840001 chr2L_14840001 RAL-441 341 chr2L 14889939 14889983 chr2L 14890378 14890420 jockey 13 442 1.0 3.5 2.2 4.1 481 chr2L 14889939 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890420 intergenic not near genes chr2L_13_14890001 chr2L_14890001 RAL-441 342 chr2L 14898114 14898143 chr2L 14898225 14898255 8 112 2.0 4.0 3.0 2.0 141 chr2L 14898114 intergenic not near genes chr2L 14898184 intergenic not near genes chr2L 14898255 intergenic not near genes chr2L_8_14895001 chr2L_14895001 RAL-441 343 chr2L 14982236 14982255 chr2L 14982574 14982594 4 338 0.0 6.5 3.2 1.0 358 chr2L 14982236 intron mol - chr2L 14982415 intron mol - chr2L 14982594 intron mol - chr2L_4_14980001 chr2L_14980001 RAL-441 344 chr2L 14984383 14984401 chr2L 14991983 14991995 opus 6 7613 3.0 1.0 2.0 2.0 7612 chr2L 14984383 intron mol - chr2L 14988189 intron mol - chr2L 14991995 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-441 345 chr2L 15000854 15000872 chr2L 15000983 15001013 8 120 15.5 9.5 12.5 0.6 159 chr2L 15000854 intergenic not near genes chr2L 15000934 intergenic not near genes chr2L 15001013 intergenic not near genes chr2L_8_15000001 chr2L_15000001 RAL-441 346 chr2L 15003534 15003571 chr2L 15003634 15003648 8 100 3.0 6.0 4.5 1.5 114 chr2L 15003534 intergenic not near genes chr2L 15003591 intergenic not near genes chr2L 15003648 intergenic not near genes chr2L_8_15000001 chr2L_15000001 RAL-441 347 chr2L 15013132 15013149 chr2L 15013256 15013273 4 124 4.5 2.0 3.2 1.0 141 chr2L 15013132 intergenic CR43856 - chr2L 15013202 intergenic not near genes chr2L 15013273 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-441 348 chr2L 15044704 15044731 chr2L 15044800 15044824 6 95 2.5 0.5 1.5 2.4 120 chr2L 15044704 intergenic ck - chr2L 15044764 intergenic ck - chr2L 15044824 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-441 349 chr2L 15078048 15078089 chr2L 15078156 15078197 12 104 4.5 4.0 4.2 2.3 149 chr2L 15078048 intron CG15270 + chr2L 15078122 intron CG15270 + chr2L 15078197 intron CG15270 + chr2L_12_15075001 chr2L_15075001 RAL-441 350 chr2L 15086087 15086129 chr2L 15086195 15086240 9 109 3.0 3.0 3.0 2.2 153 chr2L 15086087 intron CG15270 + chr2L 15086164 intron CG15270 + chr2L 15086240 intron CG15270 + chr2L_9_15085001 chr2L_15085001 RAL-441 351 chr2L 15161231 15161273 chr2L 15161386 15161427 8 155 1.5 2.0 1.8 2.9 196 chr2L 15161231 intergenic CR44770 + chr2L 15161329 intergenic CR44770 + chr2L 15161427 intergenic CR44770 +,CG4168 - chr2L_8_15160001 chr2L_15160001 RAL-441 352 chr2L 15226356 15226394 chr2L 15226443 15226461 11 87 4.0 4.0 4.0 2.2 105 chr2L 15226356 intergenic not near genes chr2L 15226408 intergenic not near genes chr2L 15226461 intergenic not near genes chr2L_11_15225001 chr2L_15225001 RAL-441 353 chr2L 15291153 15291158 chr2L 15291268 15291274 4 116 0.5 0.0 0.2 3.3 121 chr2L 15291153 intergenic CG15260 - chr2L 15291214 intergenic CG15260 - chr2L 15291274 intergenic CG15260 - chr2L_4_15290001 chr2L_15290001 RAL-441 354 chr2L 15343525 15343546 chr2L 15343630 15343651 5 105 5.0 0.0 2.5 1.4 126 chr2L 15343525 intergenic not near genes chr2L 15343588 intergenic not near genes chr2L 15343651 intergenic not near genes chr2L_5_15340001 chr2L_15340001 RAL-441 355 chr2L 15446033 15446053 chr2L 15453521 15453528 blood 4 7485 9.0 2.5 5.8 0.6 7495 chr2L 15446033 intergenic not near genes chr2L 15449780 intergenic not near genes chr2L 15453528 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-441 356 chr2L 15499895 15499940 chr2L 15500003 15500047 5 108 0.0 5.0 2.5 1.4 152 chr2L 15499895 intron lace + chr2L 15499971 intron lace + chr2L 15500047 intron lace + chr2L_5_15495001 chr2L_15495001 RAL-441 357 chr2L 15586392 15586434 chr2L 15593463 15593506 297 9 7072 1.5 2.5 2.0 3.0 7114 chr2L 15586392 intergenic not near genes chr2L 15589949 intergenic not near genes chr2L 15593506 intergenic not near genes chr2L_9_15585001 chr2L_15585001 RAL-441 358 chr2L 15598748 15598800 chr2L 15598847 15598874 8 95 3.5 0.0 1.8 2.9 126 chr2L 15598748 intergenic not near genes chr2L 15598811 intergenic not near genes chr2L 15598874 intergenic not near genes chr2L_8_15595001 chr2L_15595001 RAL-441 359 chr2L 15626383 15626393 chr2L 15626441 15626460 4 64 2.5 2.5 2.5 1.1 77 chr2L 15626383 intergenic not near genes chr2L 15626422 intergenic not near genes chr2L 15626460 intergenic not near genes chr2L_4_15625001 chr2L_15625001 RAL-441 360 chr2L 15748594 15748632 chr2L 15748690 15748728 4 96 1.5 1.5 1.5 1.6 134 chr2L 15748594 intergenic CR44866 +,CycE - chr2L 15748661 intergenic CR44866 + chr2L 15748728 intergenic CR44866 + chr2L_4_15745001 chr2L_15745001 RAL-441 361 chr2L 15843967 15844005 chr2L 15844412 15844451 10 443 4.5 1.0 2.8 2.6 484 chr2L 15843967 intergenic not near genes chr2L 15844209 intergenic not near genes chr2L 15844451 intergenic not near genes chr2L_10_15840001 chr2L_15840001 RAL-441 362 chr2L 15953173 15953224 chr2L 15953298 15953341 10 124 3.0 2.0 2.5 2.9 168 chr2L 15953173 intron beat-Ib - chr2L 15953257 intron beat-Ib - chr2L 15953341 intron beat-Ib - chr2L_10_15950001 chr2L_15950001 RAL-441 363 chr2L 15956006 15956060 chr2L 15957489 15957518 hobo 7 1481 3.5 4.0 3.8 1.5 1512 chr2L 15956006 intron beat-Ib - chr2L 15956762 intron beat-Ib - chr2L 15957518 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-441 364 chr2L 16001340 16001385 chr2L 16001454 16001472 11 110 1.0 4.0 2.5 3.1 132 chr2L 16001340 intron beat-Ic + chr2L 16001406 intron beat-Ic + chr2L 16001472 intron beat-Ic + chr2L_11_16000001 chr2L_16000001 RAL-441 365 chr2L 16056155 16056157 chr2L 16056235 16056253 5 92 1.0 2.0 1.5 2.0 98 chr2L 16056155 intron beat-Ia + chr2L 16056204 intron beat-Ia + chr2L 16056253 5` UTR beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-441 366 chr2L 16069255 16069295 chr2L 16069355 16069378 8 94 1.0 4.0 2.5 2.3 123 chr2L 16069255 intron beat-Ia + chr2L 16069316 intron beat-Ia + chr2L 16069378 intron beat-Ia + chr2L_8_16065001 chr2L_16065001 RAL-441 367 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 14.5 19.0 16.8 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-441 368 chr2L 16098905 16098955 chr2L 16099011 16099063 11 107 1.5 1.5 1.5 4.4 158 chr2L 16098905 intergenic not near genes chr2L 16098984 intergenic not near genes chr2L 16099063 intergenic not near genes chr2L_11_16095001 chr2L_16095001 RAL-441 369 chr2L 16141147 16141192 chr2L 16146374 16146419 copia 10 5225 2.0 5.0 3.5 2.2 5272 chr2L 16141147 intergenic not near genes chr2L 16143783 intergenic not near genes chr2L 16146419 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-441 370 chr2L 16150686 16150725 chr2L 16150785 16150805 6 91 1.5 3.5 2.5 1.7 119 chr2L 16150686 intergenic not near genes chr2L 16150746 intergenic not near genes chr2L 16150805 intergenic not near genes chr2L_6_16150001 chr2L_16150001 RAL-441 371 chr2L 16153726 16153754 chr2L 16160814 16160837 297 10 7087 2.5 3.0 2.8 2.6 7111 chr2L 16153726 intergenic not near genes chr2L 16157282 intergenic not near genes chr2L 16160837 intergenic not near genes chr2L_10_16155001 chr2L_16155001 RAL-441 372 chr2L 16207075 16207091 chr2L 16207172 16207188 5 97 1.5 5.0 3.2 1.2 113 chr2L 16207075 intergenic not near genes chr2L 16207132 intergenic not near genes chr2L 16207188 intergenic not near genes chr2L_5_16205001 chr2L_16205001 RAL-441 373 chr2L 16226163 16226205 chr2L 16226270 16226312 8 107 3.5 4.0 3.8 1.7 149 chr2L 16226163 intergenic not near genes chr2L 16226238 intergenic not near genes chr2L 16226312 intergenic not near genes chr2L_8_16225001 chr2L_16225001 RAL-441 374 chr2L 16242052 16242089 chr2L 16242164 16242201 8 111 0.5 0.0 0.2 6.7 149 chr2L 16242052 5` UTR CG42818 + chr2L 16242126 exon CG42818 + chr2L 16242201 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-441 375 chr2L 16243206 16243213 chr2L 16243302 16243310 4 96 4.5 2.5 3.5 0.9 104 chr2L 16243206 exon CG42818 + chr2L 16243258 exon CG42818 + chr2L 16243310 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-441 376 chr2L 16243216 16243374 chr2L 16243301 16243474 14 95 3.0 2.5 2.8 3.7 258 chr2L 16243216 exon CG42818 + chr2L 16243345 exon CG42818 + chr2L 16243474 exon CG42818 + chr2L_14_16240001 chr2L_16240001 RAL-441 377 chr2L 16254873 16254913 chr2L 16255152 16255192 9 278 7.0 5.0 6.0 1.3 319 chr2L 16254873 intron PRL-1 - chr2L 16255032 intron PRL-1 - chr2L 16255192 intron PRL-1 - chr2L_9_16255001 chr2L_16255001 RAL-441 378 chr2L 16354759 16354786 chr2L 16354870 16354896 5 111 0.5 3.5 2.0 1.7 137 chr2L 16354759 intergenic CaBP1 -,CG4455 + chr2L 16354828 intergenic CaBP1 -,CG4455 + chr2L 16354896 3` UTR CaBP1 - chr2L_5_16350001 chr2L_16350001 RAL-441 379 chr2L 16363925 16363967 chr2L 16364189 16364233 7 264 2.5 2.5 2.5 2.0 308 chr2L 16363925 intergenic not near genes chr2L 16364079 intergenic not near genes chr2L 16364233 intergenic not near genes chr2L_7_16360001 chr2L_16360001 RAL-441 380 chr2L 16791209 16791244 chr2L 16791315 16791350 7 106 1.0 3.0 2.0 2.3 141 chr2L 16791209 intergenic CG17928 +,Cyt-b5-r - chr2L 16791280 intergenic CG17928 + chr2L 16791350 intergenic CG17928 + chr2L_7_16790001 chr2L_16790001 RAL-441 381 chr2L 16867022 16867040 chr2L 16867131 16867155 5 113 1.5 4.0 2.8 1.3 133 chr2L 16867022 intergenic not near genes chr2L 16867088 intergenic not near genes chr2L 16867155 intergenic not near genes chr2L_5_16865001 chr2L_16865001 RAL-441 382 chr2L 16878882 16878915 chr2L 16878978 16879023 5 106 4.5 1.5 3.0 1.2 141 chr2L 16878882 intron CG32832 - chr2L 16878952 intron CG32832 - chr2L 16879023 exon CG32832 - chr2L_5_16875001 chr2L_16875001 RAL-441 383 chr2L 17032491 17032514 chr2L 17032596 17032619 6 105 2.0 2.0 2.0 2.0 128 chr2L 17032491 intergenic not near genes chr2L 17032555 intergenic not near genes chr2L 17032619 intergenic not near genes chr2L_6_17030001 chr2L_17030001 RAL-441 384 chr2L 17032517 17032521 chr2L 17032593 17032626 4 97 1.5 2.0 1.8 1.4 109 chr2L 17032517 intergenic not near genes chr2L 17032572 intergenic not near genes chr2L 17032626 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-441 385 chr2L 17111822 17111860 chr2L 17111939 17111978 9 117 1.5 2.5 2.0 3.0 156 chr2L 17111822 intergenic not near genes chr2L 17111900 intergenic not near genes chr2L 17111978 intergenic not near genes chr2L_9_17110001 chr2L_17110001 RAL-441 386 chr2L 17120847 17120873 chr2L 17120923 17120963 6 90 1.5 2.5 2.0 2.0 116 chr2L 17120847 intergenic not near genes chr2L 17120905 intergenic not near genes chr2L 17120963 intergenic not near genes chr2L_6_17120001 chr2L_17120001 RAL-441 387 chr2L 17158711 17158751 chr2L 17158833 17158838 8 118 3.5 2.0 2.8 2.1 127 chr2L 17158711 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158774 intron,intron CG34106 +,beat-IIIa + chr2L 17158838 intron,intron CG34106 +,beat-IIIa + chr2L_8_17155001 chr2L_17155001 RAL-441 388 chr2L 17167566 17167596 chr2L 17167811 17167857 pogo 11 258 2.5 2.0 2.2 3.4 291 chr2L 17167566 intron,intron CG34106 +,beat-IIIa + chr2L 17167712 intron,intron CG34106 +,beat-IIIa + chr2L 17167857 intron,intron CG34106 +,beat-IIIa + chr2L_11_17165001 chr2L_17165001 RAL-441 389 chr2L 17199143 17199186 chr2L 17200630 17200669 hobo 6 1486 4.0 1.5 2.8 1.6 1526 chr2L 17199143 intron beat-IIIc - chr2L 17199906 intron beat-IIIc - chr2L 17200669 intron beat-IIIc - chr2L_6_17195001 chr2L_17195001 RAL-441 390 chr2L 17226086 17226123 chr2L 17226185 17226222 12 97 3.5 5.0 4.2 2.3 136 chr2L 17226086 intron beat-IIIc - chr2L 17226154 intron beat-IIIc - chr2L 17226222 intron beat-IIIc - chr2L_12_17225001 chr2L_17225001 RAL-441 391 chr2L 17240555 17240594 chr2L 17240662 17240701 8 105 2.5 3.0 2.8 2.1 146 chr2L 17240555 intron beat-IIIc - chr2L 17240628 intron beat-IIIc - chr2L 17240701 intron beat-IIIc - chr2L_8_17240001 chr2L_17240001 RAL-441 392 chr2L 17273194 17273226 chr2L 17277971 17277983 F-element 7 4785 2.5 5.0 3.8 1.5 4789 chr2L 17273194 intergenic not near genes chr2L 17275588 intergenic not near genes chr2L 17277983 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-441 393 chr2L 17301612 17301629 chr2L 17301818 17301837 4 208 2.5 5.0 3.8 0.8 225 chr2L 17301612 intergenic not near genes chr2L 17301724 intergenic not near genes chr2L 17301837 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-441 394 chr2L 17303442 17303470 chr2L 17303618 17303635 11 177 2.5 3.5 3.0 2.8 193 chr2L 17303442 intergenic not near genes chr2L 17303538 intergenic not near genes chr2L 17303635 intergenic not near genes chr2L_11_17300001 chr2L_17300001 RAL-441 395 chr2L 17335532 17335571 chr2L 17336718 17336754 1360 8 1186 2.5 5.5 4.0 1.6 1222 chr2L 17335532 intergenic not near genes chr2L 17336143 intergenic not near genes chr2L 17336754 intergenic not near genes chr2L_8_17335001 chr2L_17335001 RAL-441 396 chr2L 17380596 17380610 chr2L 17380712 17380750 6 122 18.5 25.5 22.0 0.3 154 chr2L 17380596 intron Lrch - chr2L 17380673 intron Lrch - chr2L 17380750 intron Lrch - chr2L_6_17380001 chr2L_17380001 RAL-441 397 chr2L 17425749 17425796 chr2L 17425896 17425943 4 147 4.0 4.0 4.0 0.8 194 chr2L 17425749 intron Dif - chr2L 17425846 intron Dif - chr2L 17425943 intron Dif - chr2L_4_17425001 chr2L_17425001 RAL-441 398 chr2L 17432007 17432037 chr2L 17432133 17432163 1360 6 126 0.0 1.0 0.5 4.0 156 chr2L 17432007 intron Dif - chr2L 17432085 intron Dif - chr2L 17432163 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-441 399 chr2L 17466421 17466458 chr2L 17466534 17466547 16 111 0.0 5.0 2.5 4.6 126 chr2L 17466421 intron BicD - chr2L 17466484 intron BicD - chr2L 17466547 intron BicD - chr2L_16_17465001 chr2L_17465001 RAL-441 400 chr2L 17511654 17511660 chr2L 17511816 17511822 7 162 2.5 6.0 4.2 1.3 168 chr2L 17511654 intron Dhc36C + chr2L 17511738 intron Dhc36C + chr2L 17511822 exon Dhc36C + chr2L_7_17510001 chr2L_17510001 RAL-441 401 chr2L 17604594 17604619 chr2L 17604768 17604776 5 169 6.5 1.0 3.8 1.0 182 chr2L 17604594 intergenic not near genes chr2L 17604685 intergenic not near genes chr2L 17604776 intergenic not near genes chr2L_5_17600001 chr2L_17600001 RAL-441 402 chr2L 17623656 17623696 chr2L 17623900 17623946 10 247 4.0 1.0 2.5 2.9 290 chr2L 17623656 intergenic not near genes chr2L 17623801 intergenic not near genes chr2L 17623946 intergenic not near genes chr2L_10_17620001 chr2L_17620001 RAL-441 403 chr2L 17687497 17687522 chr2L 17692262 17692281 F-element 6 4764 4.0 5.0 4.5 1.1 4784 chr2L 17687497 intron CadN - chr2L 17689889 intron CadN - chr2L 17692281 intron CadN - chr2L_6_17685001 chr2L_17685001 RAL-441 404 chr2L 17723769 17723786 chr2L 17723882 17723899 5 111 3.5 2.5 3.0 1.2 130 chr2L 17723769 intron CadN - chr2L 17723834 intron CadN - chr2L 17723899 intron CadN - chr2L_5_17720001 chr2L_17720001 RAL-441 405 chr2L 17769412 17769462 chr2L 17769530 17769580 5 109 1.0 1.5 1.2 2.3 168 chr2L 17769412 intron CadN - chr2L 17769496 intron CadN - chr2L 17769580 intron CadN - chr2L_5_17765001 chr2L_17765001 RAL-441 406 chr2L 17773151 17773201 chr2L 17773328 17773369 9 171 1.5 1.0 1.2 4.1 218 chr2L 17773151 intron CadN - chr2L 17773260 intron CadN - chr2L 17773369 intron CadN - chr2L_9_17770001 chr2L_17770001 RAL-441 407 chr2L 17796024 17796044 chr2L 17796125 17796145 9 100 3.5 4.0 3.8 1.9 121 chr2L 17796024 intron CadN2 - chr2L 17796084 intron CadN2 - chr2L 17796145 intron CadN2 - chr2L_9_17795001 chr2L_17795001 RAL-441 408 chr2L 17819907 17819951 chr2L 17825130 17825174 copia 9 5216 3.0 4.5 3.8 1.9 5267 chr2L 17819907 intron CadN2 - chr2L 17822540 intron CadN2 - chr2L 17825174 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-441 409 chr2L 17911945 17911984 chr2L 17914140 17914174 pogo 10 2194 2.5 4.0 3.2 2.4 2229 chr2L 17911945 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914174 intergenic CG43271 - chr2L_10_17910001 chr2L_17910001 RAL-441 410 chr2L 17933508 17933553 chr2L 17933919 17933964 12 410 6.5 4.0 5.2 1.9 456 chr2L 17933508 intergenic not near genes chr2L 17933736 intergenic not near genes chr2L 17933964 intergenic not near genes chr2L_12_17930001 chr2L_17930001 RAL-441 411 chr2L 17938670 17938707 chr2L 17938776 17938813 8 102 3.0 1.0 2.0 2.7 143 chr2L 17938670 intergenic CR44399 - chr2L 17938742 intergenic CR44399 - chr2L 17938813 intergenic CR44399 - chr2L_8_17935001 chr2L_17935001 RAL-441 412 chr2L 17943332 17943351 chr2L 17943623 17943642 7 291 6.0 6.0 6.0 1.0 310 chr2L 17943332 intergenic not near genes chr2L 17943487 intergenic not near genes chr2L 17943642 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-441 413 chr2L 17943352 17943381 chr2L 17943622 17943653 5 282 2.0 5.5 3.8 1.0 301 chr2L 17943352 intergenic not near genes chr2L 17943502 intergenic not near genes chr2L 17943653 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-441 414 chr2L 17943878 17943920 chr2L 17944001 17944043 9 120 1.5 3.0 2.2 2.8 165 chr2L 17943878 intergenic not near genes chr2L 17943960 intergenic not near genes chr2L 17944043 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-441 415 chr2L 17951929 17951974 chr2L 17953414 17953456 hobo 20 1486 1.5 3.5 2.5 5.7 1527 chr2L 17951929 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953456 intergenic not near genes chr2L_20_17950001 chr2L_17950001 RAL-441 416 chr2L 18007685 18007700 chr2L 18007761 18007803 4 89 0.5 6.5 3.5 0.9 118 chr2L 18007685 exon CG42659 + chr2L 18007744 3` UTR CG42659 + chr2L 18007803 3` UTR CG42659 + chr2L_4_18005001 chr2L_18005001 RAL-441 417 chr2L 18051866 18051907 chr2L 18061033 18061072 roo 8 9162 2.5 4.0 3.2 1.9 9206 chr2L 18051866 intron rdo + chr2L 18056469 intron rdo + chr2L 18061072 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-441 418 chr2L 18095572 18095590 chr2L 18095673 18095691 4 101 6.0 5.0 5.5 0.6 119 chr2L 18095572 intergenic not near genes chr2L 18095632 intergenic not near genes chr2L 18095691 intergenic not near genes chr2L_4_18095001 chr2L_18095001 RAL-441 419 chr2L 18111235 18111238 chr2L 18111344 18111349 4 110 11.5 5.0 8.2 0.4 114 chr2L 18111235 intergenic not near genes chr2L 18111292 intergenic not near genes chr2L 18111349 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-441 420 chr2L 18148838 18148852 chr2L 18148937 18148968 4 111 7.5 6.5 7.0 0.5 130 chr2L 18148838 intron Socs36E - chr2L 18148903 intron Socs36E - chr2L 18148968 intron Socs36E - chr2L_4_18145001 chr2L_18145001 RAL-441 421 chr2L 18254794 18254831 chr2L 18254914 18254951 5 120 2.5 2.5 2.5 1.4 157 chr2L 18254794 intron CG42750 - chr2L 18254872 intron CG42750 - chr2L 18254951 intron CG42750 - chr2L_5_18250001 chr2L_18250001 RAL-441 422 chr2L 18264053 18264082 chr2L 18264138 18264179 7 95 5.0 3.0 4.0 1.4 126 chr2L 18264053 intron CG42750 - chr2L 18264116 intron CG42750 - chr2L 18264179 intron CG42750 - chr2L_7_18260001 chr2L_18260001 RAL-441 423 chr2L 18274030 18274073 chr2L 18274136 18274179 14 104 4.5 6.0 5.2 2.3 149 chr2L 18274030 intron CG42750 - chr2L 18274104 intron CG42750 - chr2L 18274179 intron CG42750 - chr2L_14_18270001 chr2L_18270001 RAL-441 424 chr2L 18303954 18304004 chr2L 18304065 18304115 6 103 1.5 2.0 1.8 2.1 161 chr2L 18303954 intergenic not near genes chr2L 18304034 intergenic not near genes chr2L 18304115 intergenic not near genes chr2L_6_18300001 chr2L_18300001 RAL-441 425 chr2L 18408017 18408028 chr2L 18412816 18412832 Doc 6 4802 11.5 0.0 5.8 0.9 4815 chr2L 18408017 intergenic not near genes chr2L 18410424 intergenic not near genes chr2L 18412832 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-441 426 chr2L 18441145 18441169 chr2L 18441305 18441327 4 155 2.5 9.5 6.0 0.6 182 chr2L 18441145 intergenic RpS26 - chr2L 18441236 intergenic RpS26 - chr2L 18441327 intergenic RpS26 - chr2L_4_18440001 chr2L_18440001 RAL-441 427 chr2L 18552068 18552099 chr2L 18552159 18552214 12 112 2.5 3.0 2.8 3.2 146 chr2L 18552068 intron Pde11 - chr2L 18552141 intron Pde11 - chr2L 18552214 intron Pde11 - chr2L_12_18550001 chr2L_18550001 RAL-441 428 chr2L 18577255 18577267 chr2L 18577457 18577485 4 221 2.0 2.0 2.0 1.3 230 chr2L 18577255 intron Pde11 - chr2L 18577370 intron Pde11 - chr2L 18577485 intron Pde11 - chr2L_4_18575001 chr2L_18575001 RAL-441 429 chr2L 18811417 18811433 chr2L 18811519 18811534 4 102 2.0 1.5 1.8 1.4 117 chr2L 18811417 intergenic CG10570 -,CG42502 - chr2L 18811476 intergenic CG10570 -,CG42502 - chr2L 18811534 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-441 430 chr2L 18876844 18876884 chr2L 18876942 18876962 10 92 4.5 4.0 4.2 1.9 118 chr2L 18876844 intron tup - chr2L 18876903 intron tup - chr2L 18876962 intron tup - chr2L_10_18875001 chr2L_18875001 RAL-441 431 chr2L 18901468 18901515 chr2L 18901568 18901605 11 90 4.5 2.5 3.5 2.4 137 chr2L 18901468 intergenic not near genes chr2L 18901536 intergenic not near genes chr2L 18901605 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-441 432 chr2L 19024096 19024097 chr2L 21768291 21768291 5 2744194 6.5 21.0 13.8 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-441 433 chr2L 19147350 19147391 chr2L 19154404 19154413 297 8 7044 2.5 2.5 2.5 2.3 7063 chr2L 19147350 intron brat + chr2L 19150882 intron brat + chr2L 19154413 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-441 434 chr2L 19189954 19189982 chr2L 19190127 19190156 11 173 3.5 5.0 4.2 2.1 202 chr2L 19189954 intergenic pigeon +,drl + chr2L 19190055 intergenic pigeon +,drl + chr2L 19190156 intergenic drl +,pigeon + chr2L_11_19190001 chr2L_19190001 RAL-441 435 chr2L 19209609 19209640 chr2L 19209714 19209745 5 105 1.5 2.5 2.0 1.7 136 chr2L 19209609 intergenic not near genes chr2L 19209677 intergenic not near genes chr2L 19209745 intergenic not near genes chr2L_5_19205001 chr2L_19205001 RAL-441 436 chr2L 19241057 19241089 chr2L 19241137 19241187 6 95 2.0 2.5 2.2 1.9 130 chr2L 19241057 intergenic not near genes chr2L 19241122 intergenic not near genes chr2L 19241187 intergenic not near genes chr2L_6_19240001 chr2L_19240001 RAL-441 437 chr2L 19337979 19338018 chr2L 19338285 19338289 4 297 5.5 3.5 4.5 0.7 310 chr2L 19337979 intergenic not near genes chr2L 19338134 intergenic not near genes chr2L 19338289 intergenic dnt - chr2L_4_19335001 chr2L_19335001 RAL-441 438 chr2L 19345003 19345040 chr2L 19357232 19357264 blood 9 12226 3.5 7.5 5.5 1.4 12261 chr2L 19345003 intron dnt - chr2L 19351134 intron dnt - chr2L 19357264 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-441 439 chr2L 19357530 19357566 chr2L 19357639 19357668 9 106 3.0 5.0 4.0 1.8 138 chr2L 19357530 intron dnt - chr2L 19357599 intron dnt - chr2L 19357668 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-441 440 chr2L 19374478 19374500 chr2L 19374607 19374629 4 128 9.5 2.5 6.0 0.6 151 chr2L 19374478 intergenic not near genes chr2L 19374554 intergenic not near genes chr2L 19374629 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-441 441 chr2L 19380509 19380521 chr2L 19380590 19380617 5 95 2.0 2.5 2.2 1.6 108 chr2L 19380509 intergenic CG17350 + chr2L 19380563 intergenic CG17350 + chr2L 19380617 intergenic CG17350 + chr2L_5_19380001 chr2L_19380001 RAL-441 442 chr2L 19405599 19405634 chr2L 19405709 19405744 4 110 2.5 0.0 1.2 1.8 145 chr2L 19405599 intron Pax - chr2L 19405672 intron Pax - chr2L 19405744 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-441 443 chr2L 19437503 19437519 chr2L 19437615 19437630 5 109 2.0 2.0 2.0 1.7 127 chr2L 19437503 intron CG10237 - chr2L 19437566 intron CG10237 - chr2L 19437630 intron CG10237 - chr2L_5_19435001 chr2L_19435001 RAL-441 444 chr2L 19441047 19441061 chr2L 19441144 19441156 5 97 13.5 5.0 9.2 0.5 109 chr2L 19441047 intron CG10237 - chr2L 19441102 intron CG10237 - chr2L 19441156 intron CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-441 445 chr2L 19441072 19441086 chr2L 19441143 19441180 7 93 9.5 5.0 7.2 0.9 108 chr2L 19441072 intron CG10237 - chr2L 19441126 intron CG10237 - chr2L 19441180 5` UTR CG10237 - chr2L_7_19440001 chr2L_19440001 RAL-441 446 chr2L 19591470 19591489 chr2L 19591586 19591603 4 116 4.0 2.5 3.2 1.0 133 chr2L 19591470 intron Lar + chr2L 19591536 intron Lar + chr2L 19591603 intron Lar + chr2L_4_19590001 chr2L_19590001 RAL-441 447 chr2L 19620093 19620125 chr2L 19621079 19621111 jockey 10 992 2.5 2.5 2.5 2.9 1018 chr2L 19620093 intron Lar + chr2L 19620602 intron Lar + chr2L 19621111 intron Lar + chr2L_10_19620001 chr2L_19620001 RAL-441 448 chr2L 19652552 19652594 chr2L 19674006 19674028 opus 13 21444 7.0 5.0 6.0 1.9 21476 chr2L 19652552 intron Lar + chr2L 19663290 intron Lar + chr2L 19674028 intron Lar + chr2L_13_19660001 chr2L_19660001 RAL-441 449 chr2L 19703524 19703568 chr2L 19712680 19712723 roo 9 9155 2.5 6.5 4.5 1.6 9199 chr2L 19703524 intron Lar + chr2L 19708124 intron Lar + chr2L 19712723 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-441 450 chr2L 19737358 19737388 chr2L 19740828 19740864 1360 6 3468 2.0 3.0 2.5 1.7 3506 chr2L 19737358 intergenic Nf-YB + chr2L 19739111 intergenic not near genes chr2L 19740864 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-441 451 chr2L 19762798 19762835 chr2L 19763054 19763096 pogo 5 259 4.5 4.0 4.2 1.0 298 chr2L 19762798 5` UTR fbp - chr2L 19762947 intron fbp - chr2L 19763096 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-441 452 chr2L 19821772 19821814 chr2L 19821869 19821911 7 97 4.0 2.5 3.2 1.7 139 chr2L 19821772 intron sick + chr2L 19821842 intron sick + chr2L 19821911 intron sick + chr2L_7_19820001 chr2L_19820001 RAL-441 453 chr2L 19824393 19824434 chr2L 19824496 19824498 9 98 2.5 3.0 2.8 2.4 105 chr2L 19824393 intron sick + chr2L 19824446 intron sick + chr2L 19824498 intron sick + chr2L_9_19820001 chr2L_19820001 RAL-441 454 chr2L 19837259 19837307 chr2L 19837359 19837404 14 98 5.5 3.5 4.5 2.5 145 chr2L 19837259 intron sick + chr2L 19837332 intron sick + chr2L 19837404 intron sick + chr2L_14_19835001 chr2L_19835001 RAL-441 455 chr2L 19846985 19847012 chr2L 19847065 19847071 7 83 1.0 3.5 2.2 2.2 86 chr2L 19846985 intron sick + chr2L 19847028 intron sick + chr2L 19847071 intron sick + chr2L_7_19845001 chr2L_19845001 RAL-441 456 chr2L 19871552 19871572 chr2L 19871656 19871679 6 104 1.5 10.0 5.8 0.9 127 chr2L 19871552 intron sick + chr2L 19871616 intron sick + chr2L 19871679 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-441 457 chr2L 19972910 19972958 chr2L 19973018 19973066 12 102 2.0 3.5 2.8 3.2 156 chr2L 19972910 intron CG43861 - chr2L 19972988 intron CG43861 - chr2L 19973066 intron CG43861 - chr2L_12_19970001 chr2L_19970001 RAL-441 458 chr2L 19994592 19994663 chr2L 19994823 19994842 6 197 0.0 3.0 1.5 2.4 250 chr2L 19994592 intron CG43861 - chr2L 19994717 intron CG43861 - chr2L 19994842 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-441 459 chr2L 20005854 20005895 chr2L 20010948 20010990 flea 7 5091 4.5 4.0 4.2 1.3 5136 chr2L 20005854 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010990 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-441 460 chr2L 20041439 20041462 chr2L 20041521 20041543 10 86 2.5 4.5 3.5 2.2 104 chr2L 20041439 intron sNPF + chr2L 20041491 intron sNPF + chr2L 20041543 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-441 461 chr2L 20046538 20046585 chr2L 20046647 20046682 9 96 2.0 2.0 2.0 3.0 144 chr2L 20046538 intron sNPF + chr2L 20046610 intron sNPF + chr2L 20046682 intron sNPF + chr2L_9_20045001 chr2L_20045001 RAL-441 462 chr2L 20085464 20085499 chr2L 20085560 20085590 11 100 2.0 2.5 2.2 3.4 126 chr2L 20085464 intron neb + chr2L 20085527 intron neb + chr2L 20085590 intron neb + chr2L_11_20085001 chr2L_20085001 RAL-441 463 chr2L 20127468 20127516 chr2L 20127714 20127719 15 241 4.5 3.5 4.0 3.0 251 chr2L 20127468 intergenic not near genes chr2L 20127594 intergenic not near genes chr2L 20127719 intergenic not near genes chr2L_15_20125001 chr2L_20125001 RAL-441 464 chr2L 20272103 20272121 chr2L 20282828 20282852 copia 6 10730 7.0 4.5 5.8 0.9 10749 chr2L 20272103 intergenic not near genes chr2L 20277478 intergenic not near genes chr2L 20282852 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-441 465 chr2L 20303163 20303184 chr2L 20310651 20310670 blood 4 7488 1.0 3.5 2.2 1.2 7507 chr2L 20303163 intergenic not near genes chr2L 20306916 intergenic not near genes chr2L 20310670 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-441 466 chr2L 20310873 20310919 chr2L 20310973 20310988 7 95 1.0 5.5 3.2 1.7 115 chr2L 20310873 intergenic spir + chr2L 20310930 intergenic spir + chr2L 20310988 intergenic spir + chr2L_7_20310001 chr2L_20310001 RAL-441 467 chr2L 20320022 20320065 chr2L 20320146 20320204 10 130 2.0 0.0 1.0 5.0 182 chr2L 20320022 intron spir + chr2L 20320113 intron spir + chr2L 20320204 intron spir + chr2L_10_20320001 chr2L_20320001 RAL-441 468 chr2L 20372220 20372250 chr2L 20372471 20372511 pogo 9 258 5.5 5.0 5.2 1.5 291 chr2L 20372220 intergenic Ugt37a1 - chr2L 20372366 intergenic Ugt37a1 - chr2L 20372511 exon Ugt37a1 - chr2L_9_20370001 chr2L_20370001 RAL-441 469 chr2L 20493740 20493784 chr2L 20493845 20493849 5 94 5.0 0.0 2.5 1.4 109 chr2L 20493740 intergenic not near genes chr2L 20493794 intergenic not near genes chr2L 20493849 intergenic not near genes chr2L_5_20490001 chr2L_20490001 RAL-441 470 chr2L 20498679 20498695 chr2L 20498798 20498814 5 119 4.0 5.0 4.5 0.9 135 chr2L 20498679 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498814 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-441 471 chr2L 20549115 20549155 chr2L 20549216 20549222 16 97 4.0 3.5 3.8 3.3 107 chr2L 20549115 intergenic not near genes chr2L 20549168 intergenic not near genes chr2L 20549222 intergenic not near genes chr2L_16_20545001 chr2L_20545001 RAL-441 472 chr2L 20568647 20568676 chr2L 20569057 20569062 X-element 4 404 5.5 4.0 4.8 0.7 415 chr2L 20568647 intron CR45347 + chr2L 20568854 intron CR45347 + chr2L 20569062 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-441 473 chr2L 20576205 20576246 chr2L 20583691 20583699 blood 9 7482 5.5 3.0 4.2 1.7 7494 chr2L 20576205 intergenic CR45347 + chr2L 20579952 intergenic not near genes chr2L 20583699 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-441 474 chr2L 20586544 20586561 chr2L 20586620 20586656 9 81 3.5 3.0 3.2 2.1 112 chr2L 20586544 3` UTR CR44909 - chr2L 20586600 3` UTR CR44909 - chr2L 20586656 3` UTR CR44909 - chr2L_9_20585001 chr2L_20585001 RAL-441 475 chr2L 20602728 20602745 chr2L 20602807 20602853 5 102 1.5 2.0 1.8 1.8 125 chr2L 20602728 intron CR44909 - chr2L 20602790 intron CR44909 - chr2L 20602853 intron CR44909 - chr2L_5_20600001 chr2L_20600001 RAL-441 476 chr2L 20639478 20639520 chr2L 20639774 20639792 INE-1 8 290 4.0 6.5 5.2 1.3 314 chr2L 20639478 intergenic not near genes chr2L 20639635 intergenic CG31680 + chr2L 20639792 intergenic CG31680 + chr2L_8_20635001 chr2L_20635001 RAL-441 477 chr2L 20674811 20674864 chr2L 20674916 20674962 5 101 2.5 0.0 1.2 2.3 151 chr2L 20674811 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674962 intron CG31678 - chr2L_5_20670001 chr2L_20670001 RAL-441 478 chr2L 20842045 20842087 chr2L 20842567 20842614 4 525 0.5 4.5 2.5 1.1 569 chr2L 20842045 intron CG31676 + chr2L 20842330 intron CG31676 + chr2L 20842614 intron CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-441 479 chr2L 20891535 20891543 chr2L 20896640 20896664 jockey 5 5117 2.5 5.0 3.8 1.0 5129 chr2L 20891535 intron,intron CG43739 -,sky - chr2L 20894100 intron,intron CG43739 -,sky - chr2L 20896664 intron,intron CG43739 -,sky - chr2L_5_20890001 chr2L_20890001 RAL-441 480 chr2L 20947414 20947455 chr2L 20947512 20947551 13 98 4.0 2.5 3.2 3.1 137 chr2L 20947414 3` UTR CR44606 - chr2L 20947482 3` UTR CR44606 - chr2L 20947551 3` UTR CR44606 - chr2L_13_20945001 chr2L_20945001 RAL-441 481 chr2L 20976659 20976681 chr2L 20981457 20981481 X-element 4 4803 5.5 6.0 5.8 0.6 4822 chr2L 20976659 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981481 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-441 482 chr2L 21013917 21013944 chr2L 21014024 21014040 5 98 1.5 5.0 3.2 1.2 123 chr2L 21013917 intron CG42238 - chr2L 21013978 intron CG42238 - chr2L 21014040 intron CG42238 - chr2L_5_21010001 chr2L_21010001 RAL-441 483 chr2L 21020258 21020277 chr2L 21023953 21023974 NOF 4 3696 3.5 2.0 2.8 1.1 3716 chr2L 21020258 intron CG42238 - chr2L 21022116 intron CG42238 - chr2L 21023974 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-441 484 chr2L 21041120 21041166 chr2L 21049401 21049445 Tirant 8 8273 2.5 4.5 3.5 1.8 8325 chr2L 21041120 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049445 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-441 485 chr2L 21081629 21081662 chr2L 21081773 21081816 10 150 2.0 1.5 1.8 3.6 187 chr2L 21081629 exon CG33511 - chr2L 21081722 exon CG33511 - chr2L 21081816 intron CG33511 - chr2L_10_21080001 chr2L_21080001 RAL-441 486 chr2L 21085049 21085081 chr2L 21085382 21085426 8 340 4.0 7.5 5.8 1.2 377 chr2L 21085049 exon CG33509 - chr2L 21085238 exon CG33509 - chr2L 21085426 exon CG33509 - chr2L_8_21085001 chr2L_21085001 RAL-441 487 chr2L 21091799 21091832 chr2L 21091905 21091938 14 105 2.0 7.5 4.8 2.4 139 chr2L 21091799 intron CG14397 + chr2L 21091868 intron CG14397 + chr2L 21091938 intron CG14397 + chr2L_14_21090001 chr2L_21090001 RAL-441 488 chr2L 21347536 21347575 chr2L 21355026 21355067 blood 9 7491 4.0 1.0 2.5 2.6 7531 chr2L 21347536 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355067 intron Tsp39D + chr2L_9_21350001 chr2L_21350001 RAL-441 489 chr2L 21392216 21392238 chr2L 21392296 21392344 6 96 1.0 1.0 1.0 3.0 128 chr2L 21392216 3` UTR nrv3 + chr2L 21392280 3` UTR nrv3 + chr2L 21392344 3` UTR nrv3 + chr2L_6_21390001 chr2L_21390001 RAL-441 490 chr2L 21597023 21597059 chr2L 21604781 21604823 roo 14 7759 3.0 4.5 3.8 2.9 7800 chr2L 21597023 intergenic not near genes chr2L 21600923 intergenic not near genes chr2L 21604823 intergenic not near genes chr2L_14_21600001 chr2L_21600001 RAL-441 491 chr2L 21691812 21691859 chr2L 21698302 21698350 Burdock 9 6489 2.0 3.5 2.8 2.4 6538 chr2L 21691812 intron CG31619 + chr2L 21695081 intron CG31619 + chr2L 21698350 intron CG31619 + chr2L_9_21695001 chr2L_21695001 RAL-441 492 chr2L 21745226 21745266 chr2L 21745336 21745355 7 105 0.5 1.5 1.0 3.5 129 chr2L 21745226 intron step - chr2L 21745290 intron step - chr2L 21745355 intron step - chr2L_7_21745001 chr2L_21745001 RAL-441 493 chr2L 21755494 21755516 chr2L 21755638 21755659 8 144 4.0 6.5 5.2 1.3 165 chr2L 21755494 intron step - chr2L 21755576 intron step - chr2L 21755659 intron step - chr2L_8_21755001 chr2L_21755001 RAL-441 494 chr2L 21771213 21771236 chr2L 21771336 21771362 10 124 5.5 3.5 4.5 1.8 149 chr2L 21771213 intron CG31612 - chr2L 21771288 intron CG31612 - chr2L 21771362 intron CG31612 - chr2L_10_21770001 chr2L_21770001 RAL-441 495 chr2L 21771240 21771254 chr2L 21771334 21771381 5 115 4.5 2.5 3.5 1.1 141 chr2L 21771240 intron CG31612 - chr2L 21771310 intron CG31612 - chr2L 21771381 intron CG31612 - chr2L_5_21770001 chr2L_21770001 RAL-441 496 chr2L 21787610 21787663 chr2L 21787711 21787765 6 102 1.0 0.5 0.8 3.3 155 chr2L 21787610 intron CG31612 - chr2L 21787688 intron CG31612 - chr2L 21787765 intron CG31612 - chr2L_6_21785001 chr2L_21785001 RAL-441 497 chr2L 21806206 21806254 chr2L 21806329 21806376 8 114 3.5 3.0 3.2 1.9 170 chr2L 21806206 intergenic not near genes chr2L 21806291 intergenic not near genes chr2L 21806376 intergenic not near genes chr2L_8_21805001 chr2L_21805001 RAL-441 498 chr2L 21825131 21825177 chr2L 21825584 21825631 10 449 2.5 5.0 3.8 2.1 500 chr2L 21825131 intergenic not near genes chr2L 21825381 intergenic not near genes chr2L 21825631 intergenic not near genes chr2L_10_21825001 chr2L_21825001 RAL-441 499 chr2L 21886612 21886649 chr2L 21886710 21886742 9 96 3.0 3.5 3.2 2.1 130 chr2L 21886612 intergenic not near genes chr2L 21886677 intergenic not near genes chr2L 21886742 intergenic not near genes chr2L_9_21885001 chr2L_21885001 RAL-441 500 chr2L 21898886 21898933 chr2L 21899031 21899077 7 145 1.5 2.5 2.0 2.3 191 chr2L 21898886 intergenic not near genes chr2L 21898982 intergenic not near genes chr2L 21899077 intergenic not near genes chr2L_7_21895001 chr2L_21895001 RAL-441 501 chr2L 21981678 21981691 chr2L 21990860 21990860 roo 6 9182 7.0 6.0 6.5 0.8 9182 chr2L 21981678 exon CG2528 - chr2L 21986269 intron CG2528 - chr2L 21990860 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-441 502 chr2L 21981695 21981714 chr2L 21990850 21990879 roo 8 9172 4.5 4.0 4.2 1.5 9184 chr2L 21981695 exon CG2528 - chr2L 21986287 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-441 503 chr2L 21994863 21994910 chr2L 21994959 21995006 11 95 2.0 3.0 2.5 3.1 143 chr2L 21994863 intergenic not near genes chr2L 21994934 intergenic not near genes chr2L 21995006 intergenic not near genes chr2L_11_21990001 chr2L_21990001 RAL-441 504 chr2L 21996922 21996938 chr2L 21997023 21997038 6 101 3.0 2.0 2.5 1.7 116 chr2L 21996922 intergenic not near genes chr2L 21996980 intergenic not near genes chr2L 21997038 intergenic not near genes chr2L_6_21995001 chr2L_21995001 RAL-441 505 chr2L 22047235 22047256 chr2L 22047380 22047399 4 144 5.0 4.5 4.8 0.7 164 chr2L 22047235 intergenic not near genes chr2L 22047317 intergenic not near genes chr2L 22047399 intergenic not near genes chr2L_4_22045001 chr2L_22045001 RAL-441 506 chr2L 22049766 22049781 chr2L 22049911 22049926 7 144 5.5 8.0 6.8 0.9 160 chr2L 22049766 intergenic not near genes chr2L 22049846 intergenic not near genes chr2L 22049926 intergenic not near genes chr2L_7_22045001 chr2L_22045001 RAL-441 507 chr2L 22212119 22212161 chr2L 22212686 22212727 10 565 2.0 4.5 3.2 2.4 608 chr2L 22212119 intron Ir40a - chr2L 22212423 intron Ir40a - chr2L 22212727 exon Ir40a - chr2L_10_22210001 chr2L_22210001 RAL-441 508 chr2L 22215888 22215934 chr2L 22215994 22216040 13 105 4.5 3.0 3.8 2.7 152 chr2L 22215888 intergenic not near genes chr2L 22215964 intergenic not near genes chr2L 22216040 intergenic not near genes chr2L_13_22215001 chr2L_22215001 RAL-441 509 chr2L 22239428 22239454 chr2L 22239508 22239555 13 93 4.0 3.5 3.8 2.7 127 chr2L 22239428 3` UTR CR43765 - chr2L 22239492 3` UTR CR43765 - chr2L 22239555 3` UTR CR43765 - chr2L_13_22235001 chr2L_22235001 RAL-441 510 chr2L 22258592 22258635 chr2L 22260737 22260780 G6 4 2145 2.0 2.5 2.2 1.2 2188 chr2L 22258592 intergenic Tif-IA + chr2L 22259686 intergenic not near genes chr2L 22260780 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-441 511 chr2L 22325292 22325333 chr2L 22325388 22325430 7 96 2.0 4.0 3.0 1.8 138 chr2L 22325292 intron CG17018 + chr2L 22325361 intron CG17018 + chr2L 22325430 intron CG17018 + chr2L_7_22325001 chr2L_22325001 RAL-441 512 chr2L 22534588 22534630 chr2L 22534707 22534742 10 119 5.0 4.0 4.5 1.8 154 chr2L 22534588 3` UTR RpL5 - chr2L 22534665 3` UTR RpL5 - chr2L 22534742 3` UTR RpL5 - chr2L_10_22530001 chr2L_22530001 RAL-441 513 chr2L 22548927 22548936 chr2L 22550135 22550181 1360 4 1228 0.0 4.0 2.0 1.3 1254 chr2L 22548927 intergenic CG17490 + chr2L 22549554 intergenic not near genes chr2L 22550181 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-441 514 chr2L 22581951 22581972 chr2L 22583760 22583781 S-element 4 1809 4.0 3.5 3.8 0.8 1830 chr2L 22581951 intron CG17494 + chr2L 22582866 intron CG17494 + chr2L 22583781 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-441 515 chr2L 22774488 22774499 chr2L 22774568 22774598 4 88 5.0 2.0 3.5 0.9 110 chr2L 22774488 intergenic not near genes chr2L 22774543 intergenic not near genes chr2L 22774598 intergenic not near genes chr2L_4_22770001 chr2L_22770001 RAL-441 516 chr2L 22776412 22776450 chr2L 22778221 22778259 S-element 4 1808 1.0 2.0 1.5 1.6 1847 chr2L 22776412 intergenic not near genes chr2L 22777336 intergenic not near genes chr2L 22778259 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-441 517 chr2L 23006485 23006537 chr2L 23007181 23007233 Osvaldo 16 690 2.5 6.5 4.5 2.9 748 chr2L 23006485 intron Cht3 - chr2L 23006859 intron Cht3 - chr2L 23007233 intron Cht3 - chr2L_16_23005001 chr2L_23005001 RAL-441 518 chr2L 23007710 23007758 chr2L 23008281 23008324 18 566 1.5 0.5 1.0 9.0 614 chr2L 23007710 intron Cht3 - chr2L 23008017 intron Cht3 - chr2L 23008324 intron Cht3 - chr2L_18_23005001 chr2L_23005001 RAL-441 519 chr2L 23011082 23011093 chr2L 23011273 23011293 4 194 6.5 1.5 4.0 0.8 211 chr2L 23011082 intron Cht3 - chr2L 23011188 intron Cht3 - chr2L 23011293 intron Cht3 - chr2L_4_23010001 chr2L_23010001 RAL-441 520 chr2R 469941 469977 chr2R 473202 473217 F-element 6 3251 2.0 1.0 1.5 2.4 3276 chr2R 469941 intergenic not near genes chr2R 471579 intergenic not near genes chr2R 473217 intergenic not near genes chr2R_6_470001 chr2R_470001 RAL-441 521 chr2R 529318 529357 chr2R 537962 537965 Max-element 7 8637 1.0 7.0 4.0 1.4 8647 chr2R 529318 intron CG40378 + chr2R 533642 intron CG40378 + chr2R 537965 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-441 522 chr2R 552742 552780 chr2R 553978 553980 1360 7 1217 0.5 3.5 2.0 2.3 1238 chr2R 552742 intron CG40378 + chr2R 553361 intron CG40378 + chr2R 553980 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-441 523 chr2R 698920 698962 chr2R 699017 699059 6 96 0.5 0.5 0.5 4.0 139 chr2R 698920 intron CG43676 + chr2R 698990 intron CG43676 + chr2R 699059 intron CG43676 + chr2R_6_695001 chr2R_695001 RAL-441 524 chr2R 1340062 1340074 chr2R 1340147 1340181 4 98 14.0 15.0 14.5 0.3 119 chr2R 1340062 intergenic not near genes chr2R 1340122 intergenic not near genes chr2R 1340181 intergenic not near genes chr2R_4_1340001 chr2R_1340001 RAL-441 525 chr2R 1365847 1365854 chr2R 1365978 1365983 4 131 9.0 3.5 6.2 0.6 136 chr2R 1365847 intron l(2)41Ab + chr2R 1365915 intron l(2)41Ab + chr2R 1365983 intron l(2)41Ab + chr2R_4_1365001 chr2R_1365001 RAL-441 526 chr2R 1365855 1365895 chr2R 1365977 1366010 10 128 4.5 3.5 4.0 2.0 155 chr2R 1365855 intron l(2)41Ab + chr2R 1365932 intron l(2)41Ab + chr2R 1366010 intron l(2)41Ab + chr2R_10_1365001 chr2R_1365001 RAL-441 527 chr2R 1516587 1516603 chr2R 1521335 1521351 1731 6 4748 15.0 5.0 10.0 0.5 4764 chr2R 1516587 exon Maf1 - chr2R 1518969 intron Maf1 - chr2R 1521351 5` UTR Maf1 - chr2R_6_1515001 chr2R_1515001 RAL-441 528 chr2R 2044686 2044696 chr2R 2045503 2045508 5 816 1.0 3.5 2.2 1.6 822 chr2R 2044686 intron CG17684 - chr2R 2045097 intron CG17684 - chr2R 2045508 intron CG17684 - chr2R_5_2045001 chr2R_2045001 RAL-441 529 chr2R 2498970 2499002 chr2R 2508135 2508169 roo 8 9166 4.0 3.0 3.5 1.8 9199 chr2R 2498970 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508169 intron MFS17 - chr2R_8_2500001 chr2R_2500001 RAL-441 530 chr2R 2508292 2508333 chr2R 2508447 2508491 11 155 3.0 4.0 3.5 2.4 199 chr2R 2508292 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508491 intron MFS17 - chr2R_11_2505001 chr2R_2505001 RAL-441 531 chr2R 3144069 3144097 chr2R 3393364 3393389 Doc 4 249294 16.0 4.0 10.0 0.4 249320 chr2R 3144069 intron CG42596 + chr2R 3268729 intergenic not near genes chr2R 3393389 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-441 532 chr2R 3293726 3293759 chr2R 3293823 3293850 5 91 7.5 5.0 6.2 0.7 124 chr2R 3293726 intergenic not near genes chr2R 3293788 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-441 533 chr2R 4312933 4312984 chr2R 4313036 4313087 15 101 3.5 3.0 3.2 3.6 154 chr2R 4312933 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313087 intergenic not near genes chr2R_15_4310001 chr2R_4310001 RAL-441 534 chr2R 4603353 4603374 chr2R 4603425 4603463 12 86 4.0 7.0 5.5 1.8 110 chr2R 4603353 intron p120ctn + chr2R 4603408 intron p120ctn + chr2R 4603463 intron p120ctn + chr2R_12_4600001 chr2R_4600001 RAL-441 535 chr2R 4621303 4621340 chr2R 4621863 4621899 16 556 4.0 5.5 4.8 2.8 596 chr2R 4621303 3` UTR CR44101 - chr2R 4621601 3` UTR CR44101 - chr2R 4621899 3` UTR CR44101 - chr2R_16_4620001 chr2R_4620001 RAL-441 536 chr2R 4621341 4621344 chr2R 4621858 4621880 6 536 3.0 5.0 4.0 1.2 539 chr2R 4621341 3` UTR CR44101 - chr2R 4621610 3` UTR CR44101 - chr2R 4621880 3` UTR CR44101 - chr2R_6_4620001 chr2R_4620001 RAL-441 537 chr2R 4624626 4624665 chr2R 4626550 4626590 Bica 11 1923 6.0 5.5 5.8 1.6 1964 chr2R 4624626 intergenic not near genes chr2R 4625608 intergenic not near genes chr2R 4626590 intergenic not near genes chr2R_11_4625001 chr2R_4625001 RAL-441 538 chr2R 4781708 4781717 chr2R 4781841 4781852 5 134 8.5 6.5 7.5 0.6 144 chr2R 4781708 intergenic not near genes chr2R 4781780 intergenic not near genes chr2R 4781852 intergenic not near genes chr2R_5_4780001 chr2R_4780001 RAL-441 539 chr2R 4781721 4781748 chr2R 4781836 4781883 10 126 4.5 6.0 5.2 1.6 162 chr2R 4781721 intergenic not near genes chr2R 4781802 intergenic not near genes chr2R 4781883 intergenic not near genes chr2R_10_4780001 chr2R_4780001 RAL-441 540 chr2R 4783415 4783432 chr2R 4783513 4783528 7 97 7.5 8.0 7.8 0.8 113 chr2R 4783415 intergenic not near genes chr2R 4783472 intergenic not near genes chr2R 4783528 intergenic not near genes chr2R_7_4780001 chr2R_4780001 RAL-441 541 chr2R 4783436 4783449 chr2R 4783512 4783546 8 89 6.5 7.5 7.0 1.0 110 chr2R 4783436 intergenic not near genes chr2R 4783491 intergenic not near genes chr2R 4783546 intergenic not near genes chr2R_8_4780001 chr2R_4780001 RAL-441 542 chr2R 4821208 4821247 chr2R 4821307 4821334 17 101 3.0 8.0 5.5 2.6 126 chr2R 4821208 intron CG17528 - chr2R 4821271 intron CG17528 - chr2R 4821334 intron CG17528 - chr2R_17_4820001 chr2R_4820001 RAL-441 543 chr2R 4816495 4816501 chr2R 4824301 4824331 ZAM 9 7809 28.5 22.0 25.2 0.3 7836 chr2R 4816495 3` UTR CG17528 - chr2R 4820413 intron CG17528 - chr2R 4824331 intergenic CG17528 - chr2R_9_4820001 chr2R_4820001 RAL-441 544 chr2R 4838873 4838900 chr2R 4840401 4840443 transib2 5 1535 7.5 7.0 7.2 0.6 1570 chr2R 4838873 intergenic not near genes chr2R 4839658 intergenic not near genes chr2R 4840443 intergenic not near genes chr2R_5_4835001 chr2R_4835001 RAL-441 545 chr2R 4887606 4887647 chr2R 4887822 4887859 6 215 3.5 2.0 2.8 1.6 253 chr2R 4887606 intergenic not near genes chr2R 4887732 intergenic not near genes chr2R 4887859 intergenic not near genes chr2R_6_4885001 chr2R_4885001 RAL-441 546 chr2R 4956998 4957046 chr2R 4957119 4957168 8 120 1.5 1.5 1.5 3.2 170 chr2R 4956998 intron Ir41a + chr2R 4957083 intron Ir41a + chr2R 4957168 intron Ir41a + chr2R_8_4955001 chr2R_4955001 RAL-441 547 chr2R 5075955 5075979 chr2R 5076107 5076123 5 145 26.5 25.5 26.0 0.2 168 chr2R 5075955 intergenic not near genes chr2R 5076039 intergenic not near genes chr2R 5076123 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-441 548 chr2R 5125227 5125272 chr2R 5125564 5125582 7 333 3.0 2.0 2.5 2.0 355 chr2R 5125227 intron gus - chr2R 5125404 intron gus - chr2R 5125582 intron gus - chr2R_7_5125001 chr2R_5125001 RAL-441 549 chr2R 5256737 5256788 chr2R 5256845 5256896 34 106 15.5 9.5 12.5 2.5 159 chr2R 5256737 intergenic not near genes chr2R 5256816 intergenic not near genes chr2R 5256896 intergenic not near genes chr2R_34_5255001 chr2R_5255001 RAL-441 550 chr2R 5417976 5418024 chr2R 5420628 5420675 Burdock 13 2652 5.0 4.5 4.8 2.2 2699 chr2R 5417976 intron laccase2 + chr2R 5419326 intron laccase2 + chr2R 5420675 intron laccase2 + chr2R_13_5415001 chr2R_5415001 RAL-441 551 chr2R 5463252 5463297 chr2R 5468679 5468724 7 5442 31.0 17.5 24.2 0.3 5472 chr2R 5463252 intergenic not near genes chr2R 5465988 intergenic not near genes chr2R 5468724 intron CG30440 - chr2R_7_5465001 chr2R_5465001 RAL-441 552 chr2R 5472354 5472391 chr2R 5472459 5472506 14 104 3.0 2.5 2.8 3.7 152 chr2R 5472354 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472506 intron CG30440 - chr2R_14_5470001 chr2R_5470001 RAL-441 553 chr2R 5491694 5491747 chr2R 5491855 5491881 9 156 2.0 3.0 2.5 2.6 187 chr2R 5491694 intron CG30440 - chr2R 5491788 intron CG30440 - chr2R 5491881 intron CG30440 - chr2R_9_5490001 chr2R_5490001 RAL-441 554 chr2R 5509505 5509548 chr2R 5509618 5509662 13 112 3.5 6.5 5.0 2.2 157 chr2R 5509505 intron CG30438 + chr2R 5509584 intron CG30438 + chr2R 5509662 intron CG30438 + chr2R_13_5505001 chr2R_5505001 RAL-441 555 chr2R 5543204 5543221 chr2R 5547307 5547317 invader1 4 4102 0.0 4.5 2.2 1.2 4113 chr2R 5543204 intron CG30438 + chr2R 5545260 intron CG30438 + chr2R 5547317 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-441 556 chr2R 5550022 5550045 chr2R 5550158 5550182 9 135 11.0 4.0 7.5 1.1 160 chr2R 5550022 intergenic CG30438 + chr2R 5550102 intergenic not near genes chr2R 5550182 intergenic not near genes chr2R_9_5550001 chr2R_5550001 RAL-441 557 chr2R 5581408 5581420 chr2R 5627607 5627649 4 46220 0.5 5.5 3.0 1.0 46241 chr2R 5581408 intergenic not near genes chr2R 5604528 intron Fis1 - chr2R 5627649 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-441 558 chr2R 5771453 5771468 chr2R 5771552 5771569 5 100 10.5 4.0 7.2 0.6 116 chr2R 5771453 intron Gp210 + chr2R 5771511 intron Gp210 + chr2R 5771569 intron Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-441 559 chr2R 5771474 5771495 chr2R 5771546 5771568 6 76 5.0 3.0 4.0 1.2 94 chr2R 5771474 intron Gp210 + chr2R 5771521 intron Gp210 + chr2R 5771568 intron Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-441 560 chr2R 5772535 5772540 chr2R 5772614 5772639 4 94 7.5 5.5 6.5 0.5 104 chr2R 5772535 3` UTR Gp210 + chr2R 5772587 3` UTR Gp210 + chr2R 5772639 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-441 561 chr2R 5869262 5869302 chr2R 5874357 5874398 flea 8 5093 3.0 6.0 4.5 1.5 5136 chr2R 5869262 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874398 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-441 562 chr2R 5897011 5897025 chr2R 5897102 5897117 6 100 2.5 4.0 3.2 1.4 106 chr2R 5897011 intron CG43366 + chr2R 5897064 intron CG43366 + chr2R 5897117 intron CG43366 + chr2R_6_5895001 chr2R_5895001 RAL-441 563 chr2R 5897028 5897038 chr2R 5897096 5897144 4 96 1.5 4.0 2.8 1.1 116 chr2R 5897028 intron CG43366 + chr2R 5897086 intron CG43366 + chr2R 5897144 intron CG43366 + chr2R_4_5895001 chr2R_5895001 RAL-441 564 chr2R 5902149 5902189 chr2R 5909724 5909768 17.6 6 7576 3.0 2.5 2.8 1.6 7619 chr2R 5902149 intron CG43366 + chr2R 5905958 intron CG43366 + chr2R 5909768 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-441 565 chr2R 5917750 5917803 chr2R 5917849 5917902 18 96 3.5 2.0 2.8 4.7 152 chr2R 5917750 intron CG43366 + chr2R 5917826 intron CG43366 + chr2R 5917902 intron CG43366 + chr2R_18_5915001 chr2R_5915001 RAL-441 566 chr2R 6016770 6016817 chr2R 6016873 6016921 5 104 2.0 2.0 2.0 1.7 151 chr2R 6016770 intergenic not near genes chr2R 6016846 intergenic not near genes chr2R 6016921 intergenic not near genes chr2R_5_6015001 chr2R_6015001 RAL-441 567 chr2R 6088356 6088378 chr2R 6088466 6088491 6 110 5.0 3.5 4.2 1.2 135 chr2R 6088356 intergenic not near genes chr2R 6088424 intergenic not near genes chr2R 6088491 intergenic not near genes chr2R_6_6085001 chr2R_6085001 RAL-441 568 chr2R 6096739 6096750 chr2R 6101910 6101919 BS 6 5188 7.0 4.0 5.5 0.9 5180 chr2R 6096739 intron EcR - chr2R 6099329 intron EcR - chr2R 6101919 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-441 569 chr2R 6129316 6129354 chr2R 6129414 6129451 9 97 4.0 5.5 4.8 1.6 135 chr2R 6129316 intron EcR - chr2R 6129384 intron EcR - chr2R 6129451 intron EcR - chr2R_9_6125001 chr2R_6125001 RAL-441 570 chr2R 6168182 6168226 chr2R 6168284 6168327 17 100 2.5 1.5 2.0 5.7 145 chr2R 6168182 intron EcR - chr2R 6168254 intron EcR - chr2R 6168327 intron EcR - chr2R_17_6165001 chr2R_6165001 RAL-441 571 chr2R 6194666 6194704 chr2R 6194768 6194795 9 99 6.0 4.5 5.2 1.5 129 chr2R 6194666 intron Ptr - chr2R 6194730 intron Ptr - chr2R 6194795 intron Ptr - chr2R_9_6190001 chr2R_6190001 RAL-441 572 chr2R 6494515 6494553 chr2R 6499297 6499335 F-element 6 4777 2.5 2.5 2.5 1.7 4820 chr2R 6494515 intergenic not near genes chr2R 6496925 intergenic not near genes chr2R 6499335 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-441 573 chr2R 6530767 6530798 chr2R 6530866 6530898 5 99 2.0 0.5 1.2 2.3 131 chr2R 6530767 intron jing + chr2R 6530832 intron jing + chr2R 6530898 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-441 574 chr2R 6559082 6559129 chr2R 6559185 6559232 10 88 4.0 2.5 3.2 2.4 150 chr2R 6559082 intron jing + chr2R 6559157 intron jing + chr2R 6559232 intron jing + chr2R_10_6555001 chr2R_6555001 RAL-441 575 chr2R 6579780 6579806 chr2R 6584887 6584912 flea 6 5106 0.0 2.0 1.0 3.0 5132 chr2R 6579780 intron jing + chr2R 6582346 intron jing + chr2R 6584912 intron jing + chr2R_6_6580001 chr2R_6580001 RAL-441 576 chr2R 6597857 6597900 chr2R 6597965 6597995 7 101 4.5 5.5 5.0 1.2 138 chr2R 6597857 intron jing + chr2R 6597926 intron jing + chr2R 6597995 intron jing + chr2R_7_6595001 chr2R_6595001 RAL-441 577 chr2R 6607908 6607952 chr2R 6608030 6608074 14 121 4.5 3.0 3.8 2.9 166 chr2R 6607908 intron jing + chr2R 6607991 intron jing + chr2R 6608074 intron jing + chr2R_14_6605001 chr2R_6605001 RAL-441 578 chr2R 6685863 6685881 chr2R 6685965 6685983 6 102 6.0 5.5 5.8 0.9 120 chr2R 6685863 intron,intron CG9422 +,Tdc2 - chr2R 6685923 intron,intron CG9422 +,Tdc2 - chr2R 6685983 intron,intron CG9422 +,Tdc2 - chr2R_6_6685001 chr2R_6685001 RAL-441 579 chr2R 6691104 6691150 chr2R 6691201 6691249 6 93 3.0 2.5 2.8 1.6 145 chr2R 6691104 intron CG9422 + chr2R 6691176 intron CG9422 + chr2R 6691249 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-441 580 chr2R 6699576 6699617 chr2R 6699681 6699693 4 98 1.0 2.5 1.8 1.4 117 chr2R 6699576 intergenic Rab2 + chr2R 6699634 intergenic Rab2 + chr2R 6699693 intergenic Rab2 + chr2R_4_6695001 chr2R_6695001 RAL-441 581 chr2R 6710700 6710736 chr2R 6710911 6710948 7 211 0.0 4.0 2.0 2.3 248 chr2R 6710700 intron,intron CG3409 -,CG45092 - chr2R 6710824 intron,intron CG3409 -,CG45092 - chr2R 6710948 intron,intron CG3409 -,CG45092 - chr2R_7_6710001 chr2R_6710001 RAL-441 582 chr2R 6712577 6712599 chr2R 6712689 6712716 7 114 7.0 4.0 5.5 1.1 139 chr2R 6712577 intron,intron CG3409 -,CG45092 - chr2R 6712646 intron,intron CG3409 -,CG45092 - chr2R 6712716 intron,intron CG3409 -,CG45092 - chr2R_7_6710001 chr2R_6710001 RAL-441 583 chr2R 6912851 6912864 chr2R 6913122 6913143 8 293 2.5 2.0 2.2 2.5 292 chr2R 6912851 intron CG30158 + chr2R 6912997 intron CG30158 + chr2R 6913143 intron CG30158 + chr2R_8_6910001 chr2R_6910001 RAL-441 584 chr2R 6948071 6948104 chr2R 6948167 6948175 7 92 1.0 0.5 0.8 3.9 104 chr2R 6948071 intron,intron mim -,CheB42c - chr2R 6948123 intron,intron mim -,CheB42c - chr2R 6948175 intron,intron mim -,CheB42c - chr2R_7_6945001 chr2R_6945001 RAL-441 585 chr2R 7039150 7039154 chr2R 7039437 7039445 5 293 1.0 3.5 2.2 1.6 295 chr2R 7039150 intergenic CG33914 - chr2R 7039298 intergenic CG33914 - chr2R 7039445 intergenic CG33914 - chr2R_5_7035001 chr2R_7035001 RAL-441 586 chr2R 7067607 7067623 chr2R 7067681 7067727 7 100 1.5 4.0 2.8 1.8 120 chr2R 7067607 intergenic not near genes chr2R 7067667 intergenic not near genes chr2R 7067727 intergenic not near genes chr2R_7_7065001 chr2R_7065001 RAL-441 587 chr2R 7085973 7086000 chr2R 7086080 7086103 4 105 3.5 3.0 3.2 1.0 130 chr2R 7085973 intergenic esn + chr2R 7086038 intergenic esn + chr2R 7086103 intergenic esn + chr2R_4_7085001 chr2R_7085001 RAL-441 588 chr2R 7171255 7171280 chr2R 7171359 7171386 6 105 5.0 7.5 6.2 0.8 131 chr2R 7171255 intron pk + chr2R 7171320 intron pk + chr2R 7171386 intron pk + chr2R_6_7170001 chr2R_7170001 RAL-441 589 chr2R 7196568 7196594 chr2R 7201347 7201388 F-element 7 4792 3.0 1.5 2.2 2.2 4820 chr2R 7196568 intron pk + chr2R 7198978 intron pk + chr2R 7201388 intron pk + chr2R_7_7195001 chr2R_7195001 RAL-441 590 chr2R 7209864 7209874 chr2R 7217645 7217655 roo 4 7781 0.5 3.0 1.8 1.4 7791 chr2R 7209864 intron pk + chr2R 7213760 intron pk + chr2R 7217655 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-441 591 chr2R 7226652 7226666 chr2R 7226740 7226779 6 102 1.5 3.0 2.2 1.9 127 chr2R 7226652 intergenic not near genes chr2R 7226716 intergenic not near genes chr2R 7226779 intergenic not near genes chr2R_6_7225001 chr2R_7225001 RAL-441 592 chr2R 7235806 7235837 chr2R 7240917 7240940 jockey 7 5108 8.5 4.5 6.5 0.9 5134 chr2R 7235806 intergenic not near genes chr2R 7238373 intergenic not near genes chr2R 7240940 intergenic not near genes chr2R_7_7235001 chr2R_7235001 RAL-441 593 chr2R 7291559 7291604 chr2R 7291911 7291950 9 352 28.5 33.5 31.0 0.3 391 chr2R 7291559 intron pwn + chr2R 7291754 intron pwn + chr2R 7291950 intron pwn + chr2R_9_7290001 chr2R_7290001 RAL-441 594 chr2R 7294515 7294546 chr2R 7294618 7294650 7 103 6.0 4.0 5.0 1.2 135 chr2R 7294515 intron pwn + chr2R 7294582 intron pwn + chr2R 7294650 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-441 595 chr2R 7311768 7311804 chr2R 7311866 7311902 8 96 2.5 1.0 1.8 2.9 134 chr2R 7311768 intron CG12164 + chr2R 7311835 intron CG12164 + chr2R 7311902 intron CG12164 + chr2R_8_7310001 chr2R_7310001 RAL-441 596 chr2R 7353372 7353386 chr2R 7353498 7353511 9 125 9.0 4.5 6.8 1.2 139 chr2R 7353372 intron Dscam1 - chr2R 7353442 intron Dscam1 - chr2R 7353511 intron Dscam1 - chr2R_9_7350001 chr2R_7350001 RAL-441 597 chr2R 7353391 7353417 chr2R 7353490 7353543 8 122 3.0 2.0 2.5 2.3 152 chr2R 7353391 intron Dscam1 - chr2R 7353467 intron Dscam1 - chr2R 7353543 intron Dscam1 - chr2R_8_7350001 chr2R_7350001 RAL-441 598 chr2R 7413572 7413604 chr2R 7413953 7413970 9 379 3.0 3.5 3.2 2.1 398 chr2R 7413572 intergenic not near genes chr2R 7413771 intergenic not near genes chr2R 7413970 intergenic not near genes chr2R_9_7410001 chr2R_7410001 RAL-441 599 chr2R 7413610 7413614 chr2R 7413952 7413994 4 371 1.5 3.5 2.5 1.1 384 chr2R 7413610 intergenic not near genes chr2R 7413802 intergenic not near genes chr2R 7413994 intergenic not near genes chr2R_4_7410001 chr2R_7410001 RAL-441 600 chr2R 7567647 7567672 chr2R 7567748 7567776 10 103 8.0 3.0 5.5 1.5 129 chr2R 7567647 intron Vps13 + chr2R 7567712 intron Vps13 + chr2R 7567776 intron Vps13 + chr2R_10_7565001 chr2R_7565001 RAL-441 601 chr2R 7567673 7567694 chr2R 7567744 7567769 12 98 4.5 2.5 3.5 2.7 96 chr2R 7567673 intron Vps13 + chr2R 7567721 intron Vps13 + chr2R 7567769 intron Vps13 + chr2R_12_7565001 chr2R_7565001 RAL-441 602 chr2R 7623808 7623826 chr2R 7624649 7624661 8 833 40.5 18.0 29.2 0.3 853 chr2R 7623808 intron CG43340 + chr2R 7624234 intron CG43340 + chr2R 7624661 intron CG43340 + chr2R_8_7620001 chr2R_7620001 RAL-441 603 chr2R 7691991 7692034 chr2R 7692092 7692135 9 101 1.5 2.5 2.0 3.0 144 chr2R 7691991 intron CG1399 - chr2R 7692063 intron CG1399 - chr2R 7692135 intron CG1399 - chr2R_9_7690001 chr2R_7690001 RAL-441 604 chr2R 7760267 7760303 chr2R 7760423 7760460 12 150 4.0 3.5 3.8 2.5 193 chr2R 7760267 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760460 intron,intron CG30497 -,CG45093 - chr2R_12_7760001 chr2R_7760001 RAL-441 605 chr2R 7815650 7815697 chr2R 7822139 7822180 Burdock 12 6486 3.0 2.0 2.5 3.4 6530 chr2R 7815650 intergenic CG1882 + chr2R 7818915 intergenic not near genes chr2R 7822180 3` UTR cathD - chr2R_12_7815001 chr2R_7815001 RAL-441 606 chr2R 7842196 7842228 chr2R 7842288 7842335 17 99 2.5 3.5 3.0 4.2 139 chr2R 7842196 intron Dgk - chr2R 7842266 intron Dgk - chr2R 7842335 intron Dgk - chr2R_17_7840001 chr2R_7840001 RAL-441 607 chr2R 7853071 7853105 chr2R 7853177 7853211 7 105 6.0 5.0 5.5 1.1 140 chr2R 7853071 intron Dgk - chr2R 7853141 intron Dgk - chr2R 7853211 intron Dgk - chr2R_7_7850001 chr2R_7850001 RAL-441 608 chr2R 7869177 7869190 chr2R 7873980 7873996 Doc 5 4805 10.5 4.0 7.2 0.6 4819 chr2R 7869177 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873996 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-441 609 chr2R 7869191 7869213 chr2R 7873970 7873988 Doc 7 4791 7.5 2.5 5.0 1.2 4797 chr2R 7869191 intron Dgk - chr2R 7871590 intron Dgk - chr2R 7873988 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-441 610 chr2R 7892135 7892177 chr2R 7892378 7892399 6 239 3.0 7.0 5.0 1.0 264 chr2R 7892135 intron CG30377 + chr2R 7892267 intron CG30377 + chr2R 7892399 intron CG30377 + chr2R_6_7890001 chr2R_7890001 RAL-441 611 chr2R 7901667 7901713 chr2R 7901854 7901903 5 182 2.0 2.5 2.2 1.6 236 chr2R 7901667 intron CG30377 + chr2R 7901785 intron CG30377 + chr2R 7901903 intron CG30377 + chr2R_5_7900001 chr2R_7900001 RAL-441 612 chr2R 7920001 7920022 chr2R 7924505 7924526 11 4505 23.0 17.0 20.0 0.5 4525 chr2R 7920001 intron Cul1 + chr2R 7922264 exon Or43b - chr2R 7924526 exon Kdm4A - chr2R_11_7920001 chr2R_7920001 RAL-441 613 chr2R 7956073 7956107 chr2R 7956168 7956203 14 91 4.5 3.5 4.0 2.8 130 chr2R 7956073 intergenic CG2906 +,CG14764 - chr2R 7956138 intergenic CG2906 +,CG14764 - chr2R 7956203 5` UTR CG2906 + chr2R_14_7955001 chr2R_7955001 RAL-441 614 chr2R 7982051 7982092 chr2R 7982181 7982222 11 129 6.5 7.5 7.0 1.4 171 chr2R 7982051 intron ACC - chr2R 7982136 intron ACC - chr2R 7982222 intron ACC - chr2R_11_7980001 chr2R_7980001 RAL-441 615 chr2R 8015650 8015681 chr2R 8017673 8017730 12 2028 2.5 0.0 1.2 5.5 2080 chr2R 8015650 intergenic mir-4981 + chr2R 8016690 intergenic not near genes chr2R 8017730 intergenic not near genes chr2R_12_8015001 chr2R_8015001 RAL-441 616 chr2R 8018109 8018140 chr2R 8018222 8018253 9 113 4.5 3.0 3.8 1.9 144 chr2R 8018109 intergenic not near genes chr2R 8018181 intergenic not near genes chr2R 8018253 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-441 617 chr2R 8026814 8026837 chr2R 8026910 8026933 5 96 1.5 5.0 3.2 1.2 119 chr2R 8026814 intergenic CR45267 + chr2R 8026874 intergenic CR45267 + chr2R 8026933 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 RAL-441 618 chr2R 8067051 8067089 chr2R 8067155 8067193 8 104 2.5 6.0 4.2 1.5 142 chr2R 8067051 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067193 exon CG17977 - chr2R_8_8065001 chr2R_8065001 RAL-441 619 chr2R 8076666 8076685 chr2R 8076765 8076784 9 99 8.5 3.0 5.8 1.3 118 chr2R 8076666 intron lig + chr2R 8076725 intron lig + chr2R 8076784 intron lig + chr2R_9_8075001 chr2R_8075001 RAL-441 620 chr2R 8076687 8076710 chr2R 8076760 8076810 10 96 4.0 2.0 3.0 2.5 123 chr2R 8076687 intron lig + chr2R 8076748 intron lig + chr2R 8076810 intron lig + chr2R_10_8075001 chr2R_8075001 RAL-441 621 chr2R 8089240 8089287 chr2R 8089346 8089393 6 106 4.0 6.0 5.0 1.0 153 chr2R 8089240 3` UTR sut2 + chr2R 8089316 intergenic sut2 +,sut3 + chr2R 8089393 intergenic sut3 +,sut2 + chr2R_6_8085001 chr2R_8085001 RAL-441 622 chr2R 8114019 8114063 chr2R 8114121 8114151 9 105 0.0 1.0 0.5 6.0 132 chr2R 8114019 intergenic Asap - chr2R 8114085 intergenic Asap - chr2R 8114151 intergenic Asap - chr2R_9_8110001 chr2R_8110001 RAL-441 623 chr2R 8157895 8157909 chr2R 8157987 8158005 5 101 3.5 4.5 4.0 1.0 110 chr2R 8157895 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8158005 5` UTR CR44068 + chr2R_5_8155001 chr2R_8155001 RAL-441 624 chr2R 8249548 8249596 chr2R 8249650 8249664 4 93 1.5 1.5 1.5 1.6 116 chr2R 8249548 5` UTR CG44439 - chr2R 8249606 intergenic CG44439 - chr2R 8249664 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-441 625 chr2R 8330852 8330886 chr2R 8331346 8331392 roo 13 502 2.5 3.5 3.0 3.2 540 chr2R 8330852 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331392 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-441 626 chr2R 8379767 8379795 chr2R 8379883 8379911 11 114 7.5 4.0 5.8 1.6 144 chr2R 8379767 intron pdm3 + chr2R 8379839 intron pdm3 + chr2R 8379911 intron pdm3 + chr2R_11_8375001 chr2R_8375001 RAL-441 627 chr2R 8379799 8379815 chr2R 8379882 8379917 5 100 4.5 4.0 4.2 1.0 118 chr2R 8379799 intron pdm3 + chr2R 8379858 intron pdm3 + chr2R 8379917 intron pdm3 + chr2R_5_8375001 chr2R_8375001 RAL-441 628 chr2R 8398222 8398244 chr2R 8402998 8403026 Doc 6 4790 3.0 6.0 4.5 1.1 4804 chr2R 8398222 intron CG2121 - chr2R 8400624 intron CG2121 - chr2R 8403026 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-441 629 chr2R 8427866 8427899 chr2R 8427949 8427998 10 93 3.0 5.5 4.2 1.9 132 chr2R 8427866 intron CSN7 + chr2R 8427932 intron CSN7 + chr2R 8427998 exon CSN7 + chr2R_10_8425001 chr2R_8425001 RAL-441 630 chr2R 8429285 8429296 chr2R 8429641 8429653 4 356 6.5 0.5 3.5 0.9 368 chr2R 8429285 intergenic not near genes chr2R 8429469 intergenic not near genes chr2R 8429653 intergenic Lcp1 - chr2R_4_8425001 chr2R_8425001 RAL-441 631 chr2R 8498054 8498082 chr2R 8498596 8498624 7 541 4.0 3.0 3.5 1.6 570 chr2R 8498054 intron mtt - chr2R 8498339 intron mtt - chr2R 8498624 intron mtt - chr2R_7_8495001 chr2R_8495001 RAL-441 632 chr2R 8518779 8518800 chr2R 12066268 12066273 6 3547484 16.5 0.0 8.2 0.7 3547494 chr2R 8518779 intron mtt - chr2R 10292526 intron CAP + chr2R 12066273 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-441 633 chr2R 8524948 8524981 chr2R 8525085 8525138 12 150 3.0 3.0 3.0 3.0 190 chr2R 8524948 intron mtt - chr2R 8525043 intron mtt - chr2R 8525138 intron mtt - chr2R_12_8525001 chr2R_8525001 RAL-441 634 chr2R 8557425 8557478 chr2R 8557912 8557962 11 484 5.5 3.0 4.2 2.1 537 chr2R 8557425 intergenic not near genes chr2R 8557694 intergenic not near genes chr2R 8557962 intergenic CR45308 - chr2R_11_8555001 chr2R_8555001 RAL-441 635 chr2R 8564243 8564296 chr2R 8565266 8565319 15 1020 11.0 21.0 16.0 0.9 1076 chr2R 8564243 3` UTR Cyp6a14 - chr2R 8564781 intron Cyp6a14 - chr2R 8565319 exon Cyp6a14 - chr2R_15_8560001 chr2R_8560001 RAL-441 636 chr2R 8563668 8563688 chr2R 8565956 8565999 14 2289 25.5 43.5 34.5 0.4 2331 chr2R 8563668 intergenic not near genes chr2R 8564834 exon Cyp6a14 - chr2R 8565999 5` UTR Cyp6a14 - chr2R_14_8560001 chr2R_8560001 RAL-441 637 chr2R 8566040 8566057 chr2R 8567006 8567023 1360 6 966 3.5 3.0 3.2 1.4 983 chr2R 8566040 5` UTR Cyp6a14 - chr2R 8566532 5` UTR Cyp6a14 - chr2R 8567023 5` UTR Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-441 638 chr2R 8722762 8722785 chr2R 8723008 8723044 pogo 9 251 5.5 5.5 5.5 1.4 282 chr2R 8722762 intron CG14767 - chr2R 8722903 intron CG14767 - chr2R 8723044 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-441 639 chr2R 8777932 8777941 chr2R 8784155 8784158 diver 4 6222 1.5 5.5 3.5 0.9 6226 chr2R 8777932 intergenic not near genes chr2R 8781045 intergenic not near genes chr2R 8784158 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-441 640 chr2R 8833412 8833441 chr2R 8833513 8833542 6 101 5.5 2.5 4.0 1.2 130 chr2R 8833412 intron sns + chr2R 8833477 intron sns + chr2R 8833542 intron sns + chr2R_6_8830001 chr2R_8830001 RAL-441 641 chr2R 8834039 8834084 chr2R 8834203 8834238 11 162 4.0 0.5 2.2 3.4 199 chr2R 8834039 intron sns + chr2R 8834138 intron sns + chr2R 8834238 intron sns + chr2R_11_8830001 chr2R_8830001 RAL-441 642 chr2R 9052718 9052727 chr2R 9052819 9052825 4 100 3.0 9.5 6.2 0.6 107 chr2R 9052718 intron CG13743 - chr2R 9052772 intron CG13743 - chr2R 9052825 intron CG13743 - chr2R_4_9050001 chr2R_9050001 RAL-441 643 chr2R 9075888 9075933 chr2R 9076043 9076086 12 151 3.0 3.0 3.0 3.0 198 chr2R 9075888 exon ana + chr2R 9075987 intron ana + chr2R 9076086 intron ana + chr2R_12_9075001 chr2R_9075001 RAL-441 644 chr2R 9151283 9151333 chr2R 9157773 9157803 Burdock 11 6486 5.0 4.5 4.8 1.9 6520 chr2R 9151283 exon CG30345 + chr2R 9154543 intergenic not near genes chr2R 9157803 intergenic CG8008 - chr2R_11_9150001 chr2R_9150001 RAL-441 645 chr2R 9212676 9212709 chr2R 9213180 9213192 roo 7 502 5.5 4.5 5.0 1.2 516 chr2R 9212676 intergenic CR45309 + chr2R 9212934 intergenic CR45309 + chr2R 9213192 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-441 646 chr2R 9212713 9212722 chr2R 9213177 9213182 roo 5 478 4.0 4.0 4.0 1.0 469 chr2R 9212713 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213182 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-441 647 chr2R 9227863 9227885 chr2R 9227970 9227991 5 106 5.0 5.0 5.0 0.8 128 chr2R 9227863 3` UTR hig - chr2R 9227927 3` UTR hig - chr2R 9227991 3` UTR hig - chr2R_5_9225001 chr2R_9225001 RAL-441 648 chr2R 9256040 9256080 chr2R 9256137 9256180 13 96 4.0 3.0 3.5 2.9 140 chr2R 9256040 intron Pkn - chr2R 9256110 intron Pkn - chr2R 9256180 intron Pkn - chr2R_13_9255001 chr2R_9255001 RAL-441 649 chr2R 9368110 9368154 chr2R 9368206 9368225 5 79 3.0 0.0 1.5 2.0 115 chr2R 9368110 intron CG13954 - chr2R 9368168 intron CG13954 - chr2R 9368225 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-441 650 chr2R 9390871 9390916 chr2R 9390975 9391012 13 105 2.5 4.0 3.2 3.1 141 chr2R 9390871 exon l(2)03659 + chr2R 9390942 intron l(2)03659 + chr2R 9391012 exon l(2)03659 + chr2R_13_9390001 chr2R_9390001 RAL-441 651 chr2R 9391621 9391672 chr2R 9392646 9392653 11 1017 11.5 8.5 10.0 1.0 1032 chr2R 9391621 exon l(2)03659 + chr2R 9392137 exon l(2)03659 + chr2R 9392653 exon l(2)03659 + chr2R_11_9390001 chr2R_9390001 RAL-441 652 chr2R 9391326 9391367 chr2R 9392721 9392762 6 1403 44.0 25.0 34.5 0.2 1436 chr2R 9391326 exon l(2)03659 + chr2R 9392044 exon l(2)03659 + chr2R 9392762 exon l(2)03659 + chr2R_6_9390001 chr2R_9390001 RAL-441 653 chr2R 9412065 9412099 chr2R 9412195 9412212 8 128 3.5 3.5 3.5 1.8 147 chr2R 9412065 intron wun - chr2R 9412138 intron wun - chr2R 9412212 intron wun - chr2R_8_9410001 chr2R_9410001 RAL-441 654 chr2R 9480066 9480097 chr2R 9490616 9490648 roo 9 10549 3.5 3.0 3.2 2.1 10582 chr2R 9480066 intergenic not near genes chr2R 9485357 intergenic not near genes chr2R 9490648 intergenic not near genes chr2R_9_9485001 chr2R_9485001 RAL-441 655 chr2R 9605813 9605845 chr2R 9605939 9605972 7 124 4.5 3.5 4.0 1.4 159 chr2R 9605813 3` UTR CR44285 - chr2R 9605892 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605972 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_7_9605001 chr2R_9605001 RAL-441 656 chr2R 9672037 9672087 chr2R 9672163 9672207 6 124 2.5 2.0 2.2 1.9 170 chr2R 9672037 intron Mmp2 - chr2R 9672122 intron Mmp2 - chr2R 9672207 intron Mmp2 - chr2R_6_9670001 chr2R_9670001 RAL-441 657 chr2R 9726603 9726628 chr2R 9734170 9734176 17.6 5 7564 6.0 2.5 4.2 1.0 7573 chr2R 9726603 intron sqa - chr2R 9730390 intron sqa - chr2R 9734176 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-441 658 chr2R 9832280 9832326 chr2R 9832377 9832419 12 93 4.5 6.0 5.2 1.9 139 chr2R 9832280 intron hebe - chr2R 9832350 intron hebe - chr2R 9832419 intron hebe - chr2R_12_9830001 chr2R_9830001 RAL-441 659 chr2R 9869659 9869708 chr2R 9869789 9869839 12 130 4.5 3.0 3.8 2.5 180 chr2R 9869659 intron cbx - chr2R 9869749 intron cbx - chr2R 9869839 intron cbx - chr2R_12_9865001 chr2R_9865001 RAL-441 660 chr2R 9871020 9871071 chr2R 9871526 9871577 roo 9 504 11.5 4.5 8.0 1.0 557 chr2R 9871020 intron cbx - chr2R 9871298 intron cbx - chr2R 9871577 intron,5` UTR cbx -,CG18446 + chr2R_9_9870001 chr2R_9870001 RAL-441 661 chr2R 9928407 9928443 chr2R 9928549 9928588 7 144 2.0 3.5 2.8 1.8 181 chr2R 9928407 intron Mef2 - chr2R 9928498 intron Mef2 - chr2R 9928588 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-441 662 chr2R 9935020 9935060 chr2R 9935120 9935136 10 98 2.0 3.5 2.8 2.6 116 chr2R 9935020 intron Mef2 - chr2R 9935078 intron Mef2 - chr2R 9935136 intron Mef2 - chr2R_10_9935001 chr2R_9935001 RAL-441 663 chr2R 9945419 9945435 chr2R 9945635 9945642 BS 5 212 6.0 2.5 4.2 1.0 223 chr2R 9945419 intron Mef2 - chr2R 9945530 intron Mef2 - chr2R 9945642 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-441 664 chr2R 9945442 9945466 chr2R 9945627 9945682 BS 14 199 3.0 2.5 2.8 3.7 240 chr2R 9945442 intron Mef2 - chr2R 9945562 intron Mef2 - chr2R 9945682 intron Mef2 - chr2R_14_9945001 chr2R_9945001 RAL-441 665 chr2R 9956048 9956093 chr2R 9956143 9956168 14 94 3.0 3.5 3.2 3.3 120 chr2R 9956048 intron Mef2 - chr2R 9956108 intron Mef2 - chr2R 9956168 intron Mef2 - chr2R_14_9955001 chr2R_9955001 RAL-441 666 chr2R 10004594 10004622 chr2R 10004687 10004725 10 105 3.5 4.0 3.8 2.1 131 chr2R 10004594 intron Pka-R2 - chr2R 10004660 intron Pka-R2 - chr2R 10004725 intron Pka-R2 - chr2R_10_10000001 chr2R_10000001 RAL-441 667 chr2R 10005830 10005880 chr2R 10007014 10007046 1360 9 1168 3.0 2.0 2.5 2.6 1216 chr2R 10005830 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007046 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-441 668 chr2R 10020834 10020877 chr2R 10020930 10020973 16 94 5.0 4.0 4.5 2.9 139 chr2R 10020834 intron Pka-R2 - chr2R 10020904 intron Pka-R2 - chr2R 10020973 intron Pka-R2 - chr2R_16_10020001 chr2R_10020001 RAL-441 669 chr2R 10168337 10168365 chr2R 10168435 10168458 4 97 3.5 5.0 4.2 0.8 121 chr2R 10168337 intron KCNQ - chr2R 10168398 intron KCNQ - chr2R 10168458 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-441 670 chr2R 10171098 10171113 chr2R 10171202 10171215 5 103 1.0 4.5 2.8 1.3 117 chr2R 10171098 intron KCNQ - chr2R 10171156 intron KCNQ - chr2R 10171215 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-441 671 chr2R 10171116 10171146 chr2R 10171201 10171210 12 99 1.0 3.5 2.2 3.8 94 chr2R 10171116 intron KCNQ - chr2R 10171163 intron KCNQ - chr2R 10171210 intron KCNQ - chr2R_12_10170001 chr2R_10170001 RAL-441 672 chr2R 10176855 10176897 chr2R 10186045 10186087 roo 6 9190 4.5 1.5 3.0 1.5 9232 chr2R 10176855 intron KCNQ - chr2R 10181471 intron KCNQ - chr2R 10186087 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-441 673 chr2R 10189186 10189233 chr2R 10189283 10189331 5 98 1.0 1.0 1.0 2.5 145 chr2R 10189186 intron KCNQ - chr2R 10189258 intron KCNQ - chr2R 10189331 intron KCNQ - chr2R_5_10185001 chr2R_10185001 RAL-441 674 chr2R 10225712 10225740 chr2R 10225814 10225842 4 102 3.0 2.0 2.5 1.1 130 chr2R 10225712 intron,intron CG12912 -,Hr46 - chr2R 10225777 intron,intron CG12912 -,Hr46 - chr2R 10225842 intron,intron CG12912 -,Hr46 - chr2R_4_10225001 chr2R_10225001 RAL-441 675 chr2R 10257155 10257186 chr2R 10257266 10257294 4 110 0.0 0.5 0.2 3.3 139 chr2R 10257155 intron CG12911 + chr2R 10257224 intron CG12911 + chr2R 10257294 intron CG12911 + chr2R_4_10255001 chr2R_10255001 RAL-441 676 chr2R 10352651 10352693 chr2R 10352748 10352790 10 93 3.5 2.5 3.0 2.5 139 chr2R 10352651 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352790 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_10_10350001 chr2R_10350001 RAL-441 677 chr2R 10409043 10409086 chr2R 10409140 10409158 7 93 0.0 5.0 2.5 2.0 115 chr2R 10409043 intron CG42732 - chr2R 10409100 intron CG42732 - chr2R 10409158 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-441 678 chr2R 10411783 10411832 chr2R 10411885 10411933 9 99 4.0 5.0 4.5 1.6 150 chr2R 10411783 intron CG42732 - chr2R 10411858 intron CG42732 - chr2R 10411933 intron CG42732 - chr2R_9_10410001 chr2R_10410001 RAL-441 679 chr2R 10454076 10454122 chr2R 10454172 10454217 9 89 6.0 5.5 5.8 1.3 141 chr2R 10454076 intron,intron Galphao +,Cyp49a1 - chr2R 10454146 intron,intron Galphao +,Cyp49a1 - chr2R 10454217 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-441 680 chr2R 10463745 10463793 chr2R 10463890 10463919 11 139 2.5 3.0 2.8 2.9 174 chr2R 10463745 intergenic not near genes chr2R 10463832 intergenic not near genes chr2R 10463919 intergenic not near genes chr2R_11_10460001 chr2R_10460001 RAL-441 681 chr2R 10621240 10621263 chr2R 10621375 10621388 5 129 1.5 6.0 3.8 1.0 148 chr2R 10621240 intron CG11883 + chr2R 10621314 intron CG11883 + chr2R 10621388 intron CG11883 + chr2R_5_10620001 chr2R_10620001 RAL-441 682 chr2R 10644039 10644083 chr2R 10644136 10644175 13 97 3.5 0.0 1.8 4.6 136 chr2R 10644039 intron Git - chr2R 10644107 intron Git - chr2R 10644175 intron Git - chr2R_13_10640001 chr2R_10640001 RAL-441 683 chr2R 10761536 10761546 chr2R 10761710 10761720 4 174 6.0 2.5 4.2 0.8 184 chr2R 10761536 intron,5` UTR CG33144 -,CR43605 + chr2R 10761628 intron,5` UTR CG33144 -,CR43605 + chr2R 10761720 intron CG33144 - chr2R_4_10760001 chr2R_10760001 RAL-441 684 chr2R 10761547 10761584 chr2R 10761709 10761758 8 172 1.0 2.5 1.8 2.9 211 chr2R 10761547 intron,5` UTR CG33144 -,CR43605 + chr2R 10761652 intron,5` UTR CG33144 -,CR43605 + chr2R 10761758 intron CG33144 - chr2R_8_10760001 chr2R_10760001 RAL-441 685 chr2R 10805776 10805796 chr2R 10805880 10805914 5 115 4.5 4.5 4.5 0.9 138 chr2R 10805776 intron wde - chr2R 10805845 intron wde - chr2R 10805914 intron wde - chr2R_5_10805001 chr2R_10805001 RAL-441 686 chr2R 10827325 10827362 chr2R 10827419 10827470 12 102 3.5 4.0 3.8 2.5 145 chr2R 10827325 exon CG12325 + chr2R 10827398 3` UTR CG12325 + chr2R 10827470 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_12_10825001 chr2R_10825001 RAL-441 687 chr2R 10834247 10834279 chr2R 10834699 10834731 8 457 24.0 22.5 23.2 0.3 484 chr2R 10834247 intron CG12344 - chr2R 10834489 intron CG12344 - chr2R 10834731 intron CG12344 - chr2R_8_10830001 chr2R_10830001 RAL-441 688 chr2R 10851183 10851216 chr2R 10851280 10851309 8 99 1.5 5.5 3.5 1.8 126 chr2R 10851183 intron CG30015 - chr2R 10851246 intron CG30015 - chr2R 10851309 intron CG30015 - chr2R_8_10850001 chr2R_10850001 RAL-441 689 chr2R 10871635 10871669 chr2R 10871730 10871773 6 97 4.0 2.5 3.2 1.4 138 chr2R 10871635 intron CG30015 - chr2R 10871704 intron CG30015 - chr2R 10871773 intron CG30015 - chr2R_6_10870001 chr2R_10870001 RAL-441 690 chr2R 10937852 10937878 chr2R 10938045 10938071 8 192 1.5 6.5 4.0 1.6 219 chr2R 10937852 intergenic not near genes chr2R 10937962 intergenic Spn47C - chr2R 10938071 intergenic Spn47C - chr2R_8_10935001 chr2R_10935001 RAL-441 691 chr2R 10948037 10948061 chr2R 10955578 10955629 17.6 10 7553 1.0 3.5 2.2 3.1 7592 chr2R 10948037 intergenic not near genes chr2R 10951833 intergenic not near genes chr2R 10955629 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-441 692 chr2R 10974980 10974999 chr2R 10975109 10975114 4 124 2.5 2.0 2.2 1.2 134 chr2R 10974980 intergenic not near genes chr2R 10975047 intergenic not near genes chr2R 10975114 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-441 693 chr2R 11009797 11009847 chr2R 11018990 11019029 roo 14 9190 4.5 5.5 5.0 2.3 9232 chr2R 11009797 intron luna - chr2R 11014413 intron luna - chr2R 11019029 intron luna - chr2R_14_11010001 chr2R_11010001 RAL-441 694 chr2R 11059632 11059653 chr2R 11059711 11059751 7 95 7.0 2.0 4.5 1.3 119 chr2R 11059632 intron luna - chr2R 11059692 intron luna - chr2R 11059751 intron luna - chr2R_7_11055001 chr2R_11055001 RAL-441 695 chr2R 11158855 11158895 chr2R 11159044 11159084 8 189 1.0 3.5 2.2 2.5 229 chr2R 11158855 intron CG13229 - chr2R 11158970 intron CG13229 - chr2R 11159084 intron CG13229 - chr2R_8_11155001 chr2R_11155001 RAL-441 696 chr2R 11161100 11161125 chr2R 11161354 11161401 10 268 3.5 3.5 3.5 2.2 301 chr2R 11161100 intron,intron CG13229 -,shn + chr2R 11161250 intron,intron CG13229 -,shn + chr2R 11161401 intron,intron CG13229 -,shn + chr2R_10_11160001 chr2R_11160001 RAL-441 697 chr2R 11207824 11207848 chr2R 11208008 11208015 BS 5 191 5.5 3.5 4.5 0.9 191 chr2R 11207824 intron shn + chr2R 11207920 intron shn + chr2R 11208015 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-441 698 chr2R 11344150 11344154 chr2R 11344262 11344270 5 113 0.0 10.0 5.0 0.8 120 chr2R 11344150 intergenic alphaTry - chr2R 11344210 intergenic alphaTry - chr2R 11344270 3` UTR alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-441 699 chr2R 11406748 11406750 chr2R 11406839 11406847 4 94 5.0 8.0 6.5 0.5 99 chr2R 11406748 exon CG7759 + chr2R 11406798 intron CG7759 + chr2R 11406847 exon CG7759 + chr2R_4_11405001 chr2R_11405001 RAL-441 700 chr2R 11415534 11415548 chr2R 11418669 11418674 opus 6 3148 1.5 5.0 3.2 1.4 3140 chr2R 11415534 intron Drip - chr2R 11417104 intron Drip - chr2R 11418674 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-441 701 chr2R 11472630 11472679 chr2R 11473847 11473881 pogo 8 1214 4.0 5.0 4.5 1.5 1251 chr2R 11472630 intergenic not near genes chr2R 11473256 intergenic not near genes chr2R 11473881 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-441 702 chr2R 11494581 11494630 chr2R 11494689 11494739 13 103 3.0 7.5 5.2 2.1 158 chr2R 11494581 intron inv + chr2R 11494660 intron inv + chr2R 11494739 intron inv + chr2R_13_11490001 chr2R_11490001 RAL-441 703 chr2R 11555376 11555424 chr2R 11555731 11555779 7 350 2.5 1.5 2.0 2.3 403 chr2R 11555376 intergenic not near genes chr2R 11555578 intergenic not near genes chr2R 11555779 intergenic not near genes chr2R_7_11555001 chr2R_11555001 RAL-441 704 chr2R 11631383 11631411 chr2R 11631478 11631511 6 98 0.5 1.5 1.0 3.0 128 chr2R 11631383 intron CG9005 - chr2R 11631447 intron CG9005 - chr2R 11631511 intron CG9005 - chr2R_6_11630001 chr2R_11630001 RAL-441 705 chr2R 11922721 11922768 chr2R 11922820 11922853 10 96 6.0 4.0 5.0 1.7 132 chr2R 11922721 intergenic not near genes chr2R 11922787 intergenic not near genes chr2R 11922853 intergenic not near genes chr2R_10_11920001 chr2R_11920001 RAL-441 706 chr2R 12096815 12096836 chr2R 12097286 12097289 4 467 5.0 5.5 5.2 0.6 474 chr2R 12096815 intron jeb - chr2R 12097052 intron jeb - chr2R 12097289 intron jeb - chr2R_4_12095001 chr2R_12095001 RAL-441 707 chr2R 12146452 12146502 chr2R 12147594 12147618 4 1130 28.0 19.5 23.8 0.2 1166 chr2R 12146452 intron,3` UTR Hen1 +,CG8878 - chr2R 12147035 intron,exon Hen1 +,CG8878 - chr2R 12147618 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-441 708 chr2R 12145918 12145965 chr2R 12148592 12148639 11 2677 26.0 33.5 29.8 0.4 2721 chr2R 12145918 exon Hen1 + chr2R 12147278 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_11_12145001 chr2R_12145001 RAL-441 709 chr2R 12185987 12186036 chr2R 12186101 12186139 13 113 1.5 4.5 3.0 3.2 152 chr2R 12185987 intron Cyp6g1 + chr2R 12186063 intron Cyp6g1 + chr2R 12186139 intron Cyp6g1 + chr2R_13_12185001 chr2R_12185001 RAL-441 710 chr2R 12187473 12187503 chr2R 12190082 12190124 19 2618 66.0 75.0 70.5 0.3 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_19_12185001 chr2R_12185001 RAL-441 711 chr2R 12217556 12217603 chr2R 12217657 12217704 8 101 1.5 6.0 3.8 1.7 148 chr2R 12217556 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217704 intergenic not near genes chr2R_8_12215001 chr2R_12215001 RAL-441 712 chr2R 12363372 12363405 chr2R 12363824 12363836 13 447 3.5 0.5 2.0 4.3 464 chr2R 12363372 intergenic CG30043 + chr2R 12363604 intergenic CG30043 + chr2R 12363836 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-441 713 chr2R 12385344 12385365 chr2R 12385425 12385443 8 89 1.0 3.0 2.0 2.7 99 chr2R 12385344 intergenic not near genes chr2R 12385394 intergenic not near genes chr2R 12385443 intergenic not near genes chr2R_8_12385001 chr2R_12385001 RAL-441 714 chr2R 12481157 12481168 chr2R 12482939 12482949 roo 5 1788 3.0 3.5 3.2 1.2 1792 chr2R 12481157 exon Dh44-R2 + chr2R 12482053 intron Dh44-R2 + chr2R 12482949 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-441 715 chr2R 12501709 12501722 chr2R 12503872 12503876 Rt1c 5 2167 3.0 9.0 6.0 0.7 2167 chr2R 12501709 intron fdl - chr2R 12502792 intron fdl - chr2R 12503876 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-441 716 chr2R 12522406 12522458 chr2R 12522510 12522516 10 99 2.0 2.5 2.2 3.1 110 chr2R 12522406 exon CG33632 + chr2R 12522461 exon CG33632 + chr2R 12522516 exon CG33632 + chr2R_10_12520001 chr2R_12520001 RAL-441 717 chr2R 12527258 12527301 chr2R 12527485 12527530 10 224 3.0 6.5 4.8 1.7 272 chr2R 12527258 intergenic not near genes chr2R 12527394 intergenic not near genes chr2R 12527530 intergenic not near genes chr2R_10_12525001 chr2R_12525001 RAL-441 718 chr2R 12529248 12529291 chr2R 12529540 12529585 11 290 3.5 5.5 4.5 2.0 337 chr2R 12529248 5` UTR fra + chr2R 12529416 5` UTR fra + chr2R 12529585 5` UTR fra + chr2R_11_12525001 chr2R_12525001 RAL-441 719 chr2R 12540460 12540491 chr2R 12540560 12540589 4 94 7.5 2.0 4.8 0.7 129 chr2R 12540460 intron fra + chr2R 12540524 intron fra + chr2R 12540589 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-441 720 chr2R 12548500 12548552 chr2R 12548596 12548649 6 97 1.5 4.0 2.8 1.6 149 chr2R 12548500 intron fra + chr2R 12548574 intron fra + chr2R 12548649 intron fra + chr2R_6_12545001 chr2R_12545001 RAL-441 721 chr2R 12627488 12627497 chr2R 12627601 12627607 4 112 0.0 7.0 3.5 0.9 119 chr2R 12627488 intron CG17760 + chr2R 12627548 intron CG17760 + chr2R 12627607 exon CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-441 722 chr2R 12706407 12706433 chr2R 12706519 12706545 7 106 7.5 4.5 6.0 1.0 138 chr2R 12706407 intron CG42663 + chr2R 12706476 intron CG42663 + chr2R 12706545 intron CG42663 + chr2R_7_12705001 chr2R_12705001 RAL-441 723 chr2R 12707537 12707545 chr2R 12715883 12715926 roo 6 8378 0.5 2.0 1.2 2.7 8389 chr2R 12707537 intron CG42663 + chr2R 12711732 intron CG42663 + chr2R 12715926 intron CG42663 + chr2R_6_12710001 chr2R_12710001 RAL-441 724 chr2R 12789312 12789327 chr2R 12797663 12797709 roo 6 8356 5.5 1.5 3.5 1.3 8397 chr2R 12789312 intron,3` UTR sca +,CR45137 - chr2R 12793510 intron,intron sca +,CR45137 - chr2R 12797709 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-441 725 chr2R 12808298 12808348 chr2R 12808412 12808463 17 107 4.5 3.0 3.8 3.5 165 chr2R 12808298 intergenic CG17580 + chr2R 12808380 intergenic not near genes chr2R 12808463 intergenic not near genes chr2R_17_12805001 chr2R_12805001 RAL-441 726 chr2R 12819439 12819463 chr2R 12824517 12824556 jockey 5 5090 4.5 2.0 3.2 1.2 5117 chr2R 12819439 intergenic not near genes chr2R 12821998 intergenic not near genes chr2R 12824556 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-441 727 chr2R 13136827 13136860 chr2R 13141633 13141676 Doc 14 4811 4.5 4.0 4.2 2.7 4849 chr2R 13136827 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141676 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-441 728 chr2R 13167414 13167440 chr2R 13167528 13167554 4 114 3.5 0.0 1.8 1.4 140 chr2R 13167414 intron GLaz - chr2R 13167484 intron GLaz - chr2R 13167554 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-441 729 chr2R 13256467 13256505 chr2R 13258431 13258469 10 1964 26.5 23.0 24.8 0.4 2002 chr2R 13256467 intergenic CG4716 + chr2R 13257468 intergenic CG4716 +,CG10799 + chr2R 13258469 3` UTR CG10799 + chr2R_10_13255001 chr2R_13255001 RAL-441 730 chr2R 13356485 13356521 chr2R 13356590 13356626 19 104 4.5 0.5 2.5 5.4 141 chr2R 13356485 intergenic not near genes chr2R 13356556 intergenic not near genes chr2R 13356626 intergenic not near genes chr2R_19_13355001 chr2R_13355001 RAL-441 731 chr2R 13364710 13364730 chr2R 13364816 13364835 4 104 3.5 5.0 4.2 0.8 125 chr2R 13364710 intergenic not near genes chr2R 13364772 intergenic not near genes chr2R 13364835 intergenic not near genes chr2R_4_13360001 chr2R_13360001 RAL-441 732 chr2R 13431484 13431494 chr2R 13431568 13431593 4 95 5.5 0.5 3.0 1.0 109 chr2R 13431484 intron CG42321 - chr2R 13431538 intron CG42321 - chr2R 13431593 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-441 733 chr2R 13432916 13432966 chr2R 13433011 13433062 10 95 3.5 2.0 2.8 2.6 146 chr2R 13432916 intron CG42321 - chr2R 13432989 intron CG42321 - chr2R 13433062 intron,5` UTR CG42321 -,CG30065 + chr2R_10_13430001 chr2R_13430001 RAL-441 734 chr2R 13437224 13437277 chr2R 13437416 13437452 16 190 3.5 3.5 3.5 3.6 228 chr2R 13437224 intron CG42321 - chr2R 13437338 intron CG42321 - chr2R 13437452 intron CG42321 - chr2R_16_13435001 chr2R_13435001 RAL-441 735 chr2R 13439095 13439137 chr2R 13439226 13439271 17 128 3.5 3.5 3.5 3.8 176 chr2R 13439095 intergenic CG42321 -,cnn - chr2R 13439183 intergenic cnn -,CG42321 - chr2R 13439271 intergenic cnn -,CG42321 - chr2R_17_13435001 chr2R_13435001 RAL-441 736 chr2R 13580493 13580531 chr2R 13580851 13580873 jockey 7 359 0.5 2.0 1.2 3.2 380 chr2R 13580493 3` UTR CG6191 - chr2R 13580683 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580873 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-441 737 chr2R 13648703 13648750 chr2R 13649154 13649196 9 446 2.5 8.0 5.2 1.5 493 chr2R 13648703 intron fas + chr2R 13648950 intron fas + chr2R 13649196 intron fas + chr2R_9_13645001 chr2R_13645001 RAL-441 738 chr2R 13652693 13652714 chr2R 13652792 13652808 5 95 7.0 2.0 4.5 0.9 115 chr2R 13652693 intron fas + chr2R 13652750 intron fas + chr2R 13652808 intron fas + chr2R_5_13650001 chr2R_13650001 RAL-441 739 chr2R 13652716 13652738 chr2R 13652791 13652837 9 89 3.0 2.0 2.5 2.6 121 chr2R 13652716 intron fas + chr2R 13652776 intron fas + chr2R 13652837 intron fas + chr2R_9_13650001 chr2R_13650001 RAL-441 740 chr2R 13676123 13676158 chr2R 13676225 13676260 8 95 4.5 5.0 4.8 1.4 137 chr2R 13676123 intron fas + chr2R 13676192 intron fas + chr2R 13676260 intron fas + chr2R_8_13675001 chr2R_13675001 RAL-441 741 chr2R 13702144 13702182 chr2R 13702242 13702279 11 98 4.5 4.0 4.2 2.1 135 chr2R 13702144 intron fas + chr2R 13702212 intron fas + chr2R 13702279 intron fas + chr2R_11_13700001 chr2R_13700001 RAL-441 742 chr2R 13728117 13728161 chr2R 13735793 13735808 opus 6 7671 3.5 3.0 3.2 1.4 7691 chr2R 13728117 intron fas + chr2R 13731962 intron fas + chr2R 13735808 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-441 743 chr2R 13752789 13752815 chr2R 13752908 13752933 5 117 7.0 2.0 4.5 0.9 144 chr2R 13752789 intergenic not near genes chr2R 13752861 intergenic not near genes chr2R 13752933 intergenic not near genes chr2R_5_13750001 chr2R_13750001 RAL-441 744 chr2R 13768981 13769010 chr2R 13769100 13769120 11 116 4.5 7.0 5.8 1.6 139 chr2R 13768981 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769120 intergenic not near genes chr2R_11_13765001 chr2R_13765001 RAL-441 745 chr2R 13790312 13790326 chr2R 13790404 13790422 4 94 4.5 0.0 2.2 1.2 110 chr2R 13790312 intergenic not near genes chr2R 13790367 intergenic not near genes chr2R 13790422 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-441 746 chr2R 13793143 13793159 chr2R 13793233 13793235 4 88 3.5 4.0 3.8 0.8 92 chr2R 13793143 intergenic not near genes chr2R 13793189 intergenic not near genes chr2R 13793235 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-441 747 chr2R 13854929 13854980 chr2R 13855234 13855278 18 298 1.0 4.5 2.8 4.7 349 chr2R 13854929 intron,intron CG6553 -,CR44367 + chr2R 13855104 exon,5` UTR CG6553 -,CR44367 + chr2R 13855278 exon,5` UTR CG6553 -,CR44367 + chr2R_18_13855001 chr2R_13855001 RAL-441 748 chr2R 13905599 13905634 chr2R 13907599 13907599 Rt1a 5 1988 5.5 5.0 5.2 0.8 2000 chr2R 13905599 intron shot - chr2R 13906599 intron shot - chr2R 13907599 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-441 749 chr2R 13964518 13964568 chr2R 13964626 13964649 8 89 3.0 1.5 2.2 2.5 131 chr2R 13964518 intron Cp1 + chr2R 13964584 intron Cp1 + chr2R 13964649 intron Cp1 + chr2R_8_13960001 chr2R_13960001 RAL-441 750 chr2R 13986861 13986911 chr2R 13986969 13987020 14 107 2.5 4.0 3.2 3.3 159 chr2R 13986861 intron RN-tre - chr2R 13986940 intron RN-tre - chr2R 13987020 intron RN-tre - chr2R_14_13985001 chr2R_13985001 RAL-441 751 chr2R 14007745 14007759 chr2R 14007865 14007892 8 127 1.0 1.0 1.0 4.0 147 chr2R 14007745 intron mam + chr2R 14007818 intron mam + chr2R 14007892 intron mam + chr2R_8_14005001 chr2R_14005001 RAL-441 752 chr2R 14018172 14018188 chr2R 14018249 14018292 4 90 3.5 3.0 3.2 1.0 120 chr2R 14018172 intron mam + chr2R 14018232 intron mam + chr2R 14018292 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-441 753 chr2R 14036700 14036743 chr2R 14036940 14036967 8 236 2.0 2.0 2.0 2.7 267 chr2R 14036700 intron mam + chr2R 14036834 intron mam + chr2R 14036967 intron mam + chr2R_8_14035001 chr2R_14035001 RAL-441 754 chr2R 14277563 14277611 chr2R 14277665 14277711 17 100 4.0 5.0 4.5 3.1 148 chr2R 14277563 5` UTR Ih + chr2R 14277637 5` UTR Ih + chr2R 14277711 5` UTR Ih + chr2R_17_14275001 chr2R_14275001 RAL-441 755 chr2R 14285033 14285048 chr2R 14285147 14285164 5 116 2.0 1.5 1.8 1.8 131 chr2R 14285033 intron Ih + chr2R 14285098 intron Ih + chr2R 14285164 intron Ih + chr2R_5_14285001 chr2R_14285001 RAL-441 756 chr2R 14294814 14294829 chr2R 14294911 14294929 4 97 9.0 5.0 7.0 0.5 115 chr2R 14294814 intron Ih + chr2R 14294872 intron Ih + chr2R 14294929 intron Ih + chr2R_4_14290001 chr2R_14290001 RAL-441 757 chr2R 14294840 14294858 chr2R 14294907 14294938 6 84 2.5 4.5 3.5 1.3 98 chr2R 14294840 intron Ih + chr2R 14294889 intron Ih + chr2R 14294938 intron Ih + chr2R_6_14290001 chr2R_14290001 RAL-441 758 chr2R 14393848 14393898 chr2R 14393950 14393965 17 94 3.0 2.0 2.5 4.9 117 chr2R 14393848 intergenic not near genes chr2R 14393906 intergenic not near genes chr2R 14393965 intergenic not near genes chr2R_17_14390001 chr2R_14390001 RAL-441 759 chr2R 14400505 14400546 chr2R 14400604 14400645 12 93 1.5 3.5 2.5 3.4 140 chr2R 14400505 intergenic not near genes chr2R 14400575 intergenic not near genes chr2R 14400645 intergenic not near genes chr2R_12_14400001 chr2R_14400001 RAL-441 760 chr2R 14449157 14449177 chr2R 14449313 14449333 5 150 8.0 1.5 4.8 0.9 176 chr2R 14449157 intron Oaz + chr2R 14449245 intron Oaz + chr2R 14449333 intron Oaz + chr2R_5_14445001 chr2R_14445001 RAL-441 761 chr2R 14449183 14449207 chr2R 14449308 14449361 9 134 3.0 1.0 2.0 3.0 178 chr2R 14449183 intron Oaz + chr2R 14449272 intron Oaz + chr2R 14449361 intron Oaz + chr2R_9_14445001 chr2R_14445001 RAL-441 762 chr2R 14467292 14467325 chr2R 14476466 14476485 roo 12 9170 2.0 3.5 2.8 3.2 9193 chr2R 14467292 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-441 763 chr2R 14497376 14497412 chr2R 14498561 14498576 1360 12 1182 5.0 4.0 4.5 2.2 1200 chr2R 14497376 3` UTR Cpsf160 - chr2R 14497976 intron Cpsf160 - chr2R 14498576 3` UTR Cpsf160 - chr2R_12_14495001 chr2R_14495001 RAL-441 764 chr2R 14497414 14497418 chr2R 14498559 14498593 1360 4 1173 4.0 4.0 4.0 0.8 1179 chr2R 14497414 3` UTR Cpsf160 - chr2R 14498004 intron Cpsf160 - chr2R 14498593 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-441 765 chr2R 14514465 14514499 chr2R 14514578 14514612 8 113 3.0 4.5 3.8 1.7 147 chr2R 14514465 intron,intron Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514612 intron,intron Cpr51A -,CG30197 + chr2R_8_14510001 chr2R_14510001 RAL-441 766 chr2R 14521786 14521812 chr2R 14522068 14522094 8 281 3.5 4.5 4.0 1.6 308 chr2R 14521786 intergenic not near genes chr2R 14521940 intergenic not near genes chr2R 14522094 intergenic not near genes chr2R_8_14520001 chr2R_14520001 RAL-441 767 chr2R 14525877 14525915 chr2R 14525981 14526018 14 102 5.0 3.0 4.0 2.8 141 chr2R 14525877 intergenic ttv + chr2R 14525948 intergenic ttv + chr2R 14526018 intergenic ttv + chr2R_14_14525001 chr2R_14525001 RAL-441 768 chr2R 14525917 14525928 chr2R 14525980 14526030 7 94 4.0 2.5 3.2 1.7 113 chr2R 14525917 intergenic ttv + chr2R 14525974 intergenic ttv + chr2R 14526030 intergenic ttv + chr2R_7_14525001 chr2R_14525001 RAL-441 769 chr2R 14530361 14530379 chr2R 14530459 14530488 6 107 6.0 5.5 5.8 0.9 127 chr2R 14530361 intron ttv + chr2R 14530424 intron ttv + chr2R 14530488 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-441 770 chr2R 14533762 14533779 chr2R 14533863 14533865 4 98 3.0 4.5 3.8 0.8 103 chr2R 14533762 intron ttv + chr2R 14533814 intron ttv + chr2R 14533865 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-441 771 chr2R 14539165 14539178 chr2R 14539385 14539424 5 239 4.5 6.0 5.2 0.8 259 chr2R 14539165 intron ttv + chr2R 14539294 intron ttv + chr2R 14539424 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-441 772 chr2R 14541205 14541255 chr2R 14541481 14541531 9 276 5.0 2.0 3.5 2.0 326 chr2R 14541205 intron ttv + chr2R 14541368 intron ttv + chr2R 14541531 intron ttv + chr2R_9_14540001 chr2R_14540001 RAL-441 773 chr2R 14543534 14543571 chr2R 14543635 14543653 7 99 3.0 3.0 3.0 1.8 119 chr2R 14543534 intron ttv + chr2R 14543594 intron ttv + chr2R 14543653 intron ttv + chr2R_7_14540001 chr2R_14540001 RAL-441 774 chr2R 14565544 14565592 chr2R 14565641 14565689 12 97 5.0 6.5 5.8 1.8 145 chr2R 14565544 intron ttv + chr2R 14565616 intron ttv + chr2R 14565689 intron ttv + chr2R_12_14565001 chr2R_14565001 RAL-441 775 chr2R 14623877 14623899 chr2R 14623993 14624015 4 116 0.0 7.5 3.8 0.8 138 chr2R 14623877 intron Uhg5 + chr2R 14623946 5` UTR Uhg5 + chr2R 14624015 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703c + chr2R_4_14620001 chr2R_14620001 RAL-441 776 chr2R 14659307 14659332 chr2R 14659406 14659431 6 98 10.0 4.0 7.0 0.8 124 chr2R 14659307 intergenic not near genes chr2R 14659369 intergenic not near genes chr2R 14659431 intergenic not near genes chr2R_6_14655001 chr2R_14655001 RAL-441 777 chr2R 14816123 14816134 chr2R 14816211 14816249 5 102 6.0 5.5 5.8 0.7 126 chr2R 14816123 intergenic not near genes chr2R 14816186 intergenic not near genes chr2R 14816249 intergenic not near genes chr2R_5_14815001 chr2R_14815001 RAL-441 778 chr2R 14911700 14911722 chr2R 14911843 14911864 7 142 4.0 7.5 5.8 1.0 164 chr2R 14911700 intron CG10249 - chr2R 14911782 intron CG10249 - chr2R 14911864 intron CG10249 - chr2R_7_14910001 chr2R_14910001 RAL-441 779 chr2R 14916535 14916553 chr2R 14916635 14916653 4 94 2.0 0.0 1.0 2.0 118 chr2R 14916535 intron CG10249 - chr2R 14916594 intron CG10249 - chr2R 14916653 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-441 780 chr2R 14922153 14922173 chr2R 14922249 14922269 5 96 3.0 5.5 4.2 1.0 116 chr2R 14922153 intron CG10249 - chr2R 14922211 intron CG10249 - chr2R 14922269 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-441 781 chr2R 14955649 14955687 chr2R 14955758 14955781 6 104 5.5 0.0 2.8 1.6 132 chr2R 14955649 intron aPKC - chr2R 14955715 intron aPKC - chr2R 14955781 intron aPKC - chr2R_6_14955001 chr2R_14955001 RAL-441 782 chr2R 14957092 14957102 chr2R 14957273 14957280 4 180 11.5 1.5 6.5 0.5 188 chr2R 14957092 intron aPKC - chr2R 14957186 intron aPKC - chr2R 14957280 intron aPKC - chr2R_4_14955001 chr2R_14955001 RAL-441 783 chr2R 14957664 14957669 chr2R 14957776 14957784 4 114 1.5 0.5 1.0 2.0 120 chr2R 14957664 intron aPKC - chr2R 14957724 intron aPKC - chr2R 14957784 intron aPKC - chr2R_4_14955001 chr2R_14955001 RAL-441 784 chr2R 14979746 14979794 chr2R 14979842 14979890 15 96 2.0 4.0 3.0 3.8 144 chr2R 14979746 3` UTR ckn + chr2R 14979818 3` UTR ckn + chr2R 14979890 3` UTR ckn + chr2R_15_14975001 chr2R_14975001 RAL-441 785 chr2R 14998501 14998509 chr2R 14998660 14998669 4 160 8.0 2.5 5.2 0.6 168 chr2R 14998501 intergenic not near genes chr2R 14998585 intergenic not near genes chr2R 14998669 intergenic not near genes chr2R_4_14995001 chr2R_14995001 RAL-441 786 chr2R 15004713 15004752 chr2R 15005062 15005100 jockey 6 345 2.5 4.0 3.2 1.4 387 chr2R 15004713 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005100 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-441 787 chr2R 15015438 15015484 chr2R 15022881 15022923 mdg1 7 7441 2.0 3.5 2.8 1.8 7485 chr2R 15015438 intron hbs + chr2R 15019180 intron hbs + chr2R 15022923 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-441 788 chr2R 15084960 15085000 chr2R 15092028 15092068 297 7 7068 7.5 5.0 6.2 1.0 7108 chr2R 15084960 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092068 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-441 789 chr2R 15094873 15094912 chr2R 15094970 15095009 6 93 4.5 5.5 5.0 1.0 136 chr2R 15094873 intergenic not near genes chr2R 15094941 intergenic not near genes chr2R 15095009 intergenic not near genes chr2R_6_15090001 chr2R_15090001 RAL-441 790 chr2R 15119300 15119350 chr2R 15127798 15127851 Tirant 5 8495 6.0 2.5 4.2 1.0 8551 chr2R 15119300 intron chn + chr2R 15123576 intron chn + chr2R 15127851 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-441 791 chr2R 15133419 15133453 chr2R 15133555 15133590 10 134 3.0 2.5 2.8 2.6 171 chr2R 15133419 intron chn + chr2R 15133504 intron chn + chr2R 15133590 intron chn + chr2R_10_15130001 chr2R_15130001 RAL-441 792 chr2R 15137956 15137999 chr2R 15138056 15138086 12 96 2.5 1.5 2.0 4.0 130 chr2R 15137956 intron chn + chr2R 15138021 intron chn + chr2R 15138086 intron chn + chr2R_12_15135001 chr2R_15135001 RAL-441 793 chr2R 15290595 15290619 chr2R 15292242 15292265 5 1646 24.0 13.5 18.8 0.3 1670 chr2R 15290595 intron Trpm - chr2R 15291430 intron Trpm - chr2R 15292265 intron Trpm - chr2R_5_15290001 chr2R_15290001 RAL-441 794 chr2R 15374062 15374078 chr2R 15374157 15374160 4 90 4.5 7.5 6.0 0.6 98 chr2R 15374062 intergenic not near genes chr2R 15374111 intergenic not near genes chr2R 15374160 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-441 795 chr2R 15572993 15572996 chr2R 15573467 15573481 4 472 34.5 25.0 29.8 0.1 488 chr2R 15572993 3` UTR CG30466 + chr2R 15573237 exon CG8204 - chr2R 15573481 exon CG8204 - chr2R_4_15570001 chr2R_15570001 RAL-441 796 chr2R 15572989 15573030 chr2R 15573482 15573493 4 471 39.0 21.5 30.2 0.1 504 chr2R 15572989 3` UTR CG30466 + chr2R 15573241 exon CG8204 - chr2R 15573493 exon CG8204 - chr2R_4_15570001 chr2R_15570001 RAL-441 797 chr2R 15783771 15783823 chr2R 15783892 15783925 15 119 2.0 1.5 1.8 5.4 154 chr2R 15783771 intron Zasp52 - chr2R 15783848 intron Zasp52 - chr2R 15783925 intron Zasp52 - chr2R_15_15780001 chr2R_15780001 RAL-441 798 chr2R 15786504 15786538 chr2R 15786681 15786716 7 178 2.0 3.0 2.5 2.0 212 chr2R 15786504 intron Zasp52 - chr2R 15786610 intron Zasp52 - chr2R 15786716 intron Zasp52 - chr2R_7_15785001 chr2R_15785001 RAL-441 799 chr2R 15833515 15833553 chr2R 15833615 15833632 7 92 3.0 2.5 2.8 1.8 117 chr2R 15833515 intron,intron tun +,Poxn - chr2R 15833574 intron,intron tun +,Poxn - chr2R 15833632 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-441 800 chr2R 15848267 15848274 chr2R 15848410 15848416 5 143 1.0 0.0 0.5 3.3 149 chr2R 15848267 intron tun + chr2R 15848342 intron tun + chr2R 15848416 intron tun + chr2R_5_15845001 chr2R_15845001 RAL-441 801 chr2R 15869321 15869368 chr2R 15869421 15869468 8 94 0.0 5.0 2.5 2.3 147 chr2R 15869321 intergenic sli -,Rif1 - chr2R 15869394 intergenic sli -,Rif1 - chr2R 15869468 intergenic sli -,Rif1 - chr2R_8_15865001 chr2R_15865001 RAL-441 802 chr2R 16245646 16245657 chr2R 16245724 16245757 4 90 4.0 4.5 4.2 0.8 111 chr2R 16245646 intron CngA - chr2R 16245702 intron CngA - chr2R 16245757 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-441 803 chr2R 16352848 16352872 chr2R 16352950 16352973 8 102 3.0 2.5 2.8 2.1 125 chr2R 16352848 intergenic not near genes chr2R 16352910 intergenic not near genes chr2R 16352973 intergenic not near genes chr2R_8_16350001 chr2R_16350001 RAL-441 804 chr2R 16539620 16539668 chr2R 16544849 16544897 copia 8 5228 1.0 3.0 2.0 2.7 5277 chr2R 16539620 intergenic not near genes chr2R 16542258 intergenic not near genes chr2R 16544897 intergenic not near genes chr2R_8_16540001 chr2R_16540001 RAL-441 805 chr2R 16546981 16547031 chr2R 16547081 16547103 10 95 0.0 0.0 0.0 10.0 122 chr2R 16546981 intergenic not near genes chr2R 16547042 intergenic not near genes chr2R 16547103 intergenic not near genes chr2R_10_16545001 chr2R_16545001 RAL-441 806 chr2R 16614130 16614158 chr2R 16614367 16614397 7 239 2.5 4.0 3.2 1.7 267 chr2R 16614130 intron CG5065 + chr2R 16614264 intron CG5065 + chr2R 16614397 intron CG5065 + chr2R_7_16610001 chr2R_16610001 RAL-441 807 chr2R 16701978 16702007 chr2R 16702084 16702113 5 106 5.0 1.5 3.2 1.2 135 chr2R 16701978 intron CG30463 - chr2R 16702046 intron CG30463 - chr2R 16702113 intron CG30463 - chr2R_5_16700001 chr2R_16700001 RAL-441 808 chr2R 16702008 16702026 chr2R 16702083 16702101 10 95 4.5 1.0 2.8 2.6 93 chr2R 16702008 intron CG30463 - chr2R 16702054 intron CG30463 - chr2R 16702101 intron CG30463 - chr2R_10_16700001 chr2R_16700001 RAL-441 809 chr2R 16708969 16709023 chr2R 16709085 16709126 14 108 2.0 3.0 2.5 4.0 157 chr2R 16708969 intron CG30463 - chr2R 16709048 intron CG30463 - chr2R 16709126 intron CG30463 - chr2R_14_16705001 chr2R_16705001 RAL-441 810 chr2R 16713059 16713063 chr2R 16713162 16713167 4 104 0.5 7.0 3.8 0.8 108 chr2R 16713059 intron CG30463 - chr2R 16713113 intron CG30463 - chr2R 16713167 intron CG30463 - chr2R_4_16710001 chr2R_16710001 RAL-441 811 chr2R 16714533 16714571 chr2R 16714632 16714670 5 98 1.0 0.0 0.5 3.3 137 chr2R 16714533 intron CG30463 - chr2R 16714602 intron CG30463 - chr2R 16714670 intron CG30463 - chr2R_5_16710001 chr2R_16710001 RAL-441 812 chr2R 16726653 16726673 chr2R 16726772 16726792 4 119 2.5 2.0 2.2 1.2 139 chr2R 16726653 intron CG30463 - chr2R 16726722 intron CG30463 - chr2R 16726792 intron CG30463 - chr2R_4_16725001 chr2R_16725001 RAL-441 813 chr2R 16775643 16775675 chr2R 16775930 16775962 4 286 0.0 6.0 3.0 1.0 319 chr2R 16775643 3` UTR Arp53D + chr2R 16775802 intergenic Arp53D + chr2R 16775962 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-441 814 chr2R 16808004 16808056 chr2R 16808127 16808180 11 121 2.5 0.5 1.5 4.4 176 chr2R 16808004 intergenic not near genes chr2R 16808092 intergenic not near genes chr2R 16808180 intergenic not near genes chr2R_11_16805001 chr2R_16805001 RAL-441 815 chr2R 16975190 16975205 chr2R 16975287 16975302 7 97 5.0 3.5 4.2 1.3 112 chr2R 16975190 intron Cbp53E + chr2R 16975246 intron Cbp53E + chr2R 16975302 intron Cbp53E + chr2R_7_16975001 chr2R_16975001 RAL-441 816 chr2R 17147228 17147238 chr2R 17152279 17152288 jockey 4 5051 9.5 3.5 6.5 0.5 5060 chr2R 17147228 intergenic not near genes chr2R 17149758 intergenic not near genes chr2R 17152288 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-441 817 chr2R 17161339 17161359 chr2R 17161562 17161579 5 224 3.5 0.0 1.8 1.8 240 chr2R 17161339 intergenic not near genes chr2R 17161459 intergenic not near genes chr2R 17161579 intergenic not near genes chr2R_5_17160001 chr2R_17160001 RAL-441 818 chr2R 17176357 17176382 chr2R 17182567 17182592 diver 6 6210 0.5 6.5 3.5 1.3 6235 chr2R 17176357 intergenic not near genes chr2R 17179474 intergenic not near genes chr2R 17182592 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-441 819 chr2R 17236502 17236531 chr2R 17241721 17241754 copia 9 5220 3.0 6.0 4.5 1.6 5252 chr2R 17236502 intron mbl + chr2R 17239128 intron mbl + chr2R 17241754 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-441 820 chr2R 17236532 17236536 chr2R 17241718 17241735 copia 4 5208 3.0 5.0 4.0 0.8 5203 chr2R 17236532 intron mbl + chr2R 17239134 intron mbl + chr2R 17241735 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-441 821 chr2R 17339893 17339929 chr2R 17340001 17340039 12 106 3.5 4.0 3.8 2.5 146 chr2R 17339893 intron mbl + chr2R 17339966 intron mbl + chr2R 17340039 intron mbl + chr2R_12_17335001 chr2R_17335001 RAL-441 822 chr2R 17443765 17443797 chr2R 17443860 17443893 9 96 2.5 4.0 3.2 2.1 128 chr2R 17443765 intron EDTP - chr2R 17443829 intron EDTP - chr2R 17443893 intron EDTP - chr2R_9_17440001 chr2R_17440001 RAL-441 823 chr2R 17458985 17459028 chr2R 17459090 17459133 12 105 1.0 6.5 3.8 2.5 148 chr2R 17458985 intron CG14478 + chr2R 17459059 intron CG14478 + chr2R 17459133 intron CG14478 + chr2R_12_17455001 chr2R_17455001 RAL-441 824 chr2R 17470332 17470353 chr2R 17470436 17470457 5 104 0.0 0.5 0.2 4.2 125 chr2R 17470332 intron qkr54B + chr2R 17470394 intron qkr54B + chr2R 17470457 intron qkr54B + chr2R_5_17470001 chr2R_17470001 RAL-441 825 chr2R 17485899 17485936 chr2R 17490689 17490726 F-element 8 4789 4.5 2.5 3.5 1.8 4827 chr2R 17485899 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490726 intron NT5E-2 + chr2R_8_17485001 chr2R_17485001 RAL-441 826 chr2R 17519222 17519263 chr2R 17519312 17519360 8 95 2.5 7.0 4.8 1.4 138 chr2R 17519222 3` UTR Patronin - chr2R 17519291 3` UTR Patronin - chr2R 17519360 3` UTR Patronin - chr2R_8_17515001 chr2R_17515001 RAL-441 827 chr2R 17616963 17617013 chr2R 17617058 17617082 9 91 5.0 2.5 3.8 1.9 119 chr2R 17616963 intron,3` UTR CG10936 -,CG44403 - chr2R 17617022 intron,3` UTR CG10936 -,CG44403 - chr2R 17617082 intron,3` UTR CG10936 -,CG44403 - chr2R_9_17615001 chr2R_17615001 RAL-441 828 chr2R 17627744 17627762 chr2R 17628091 17628099 4 344 7.5 7.5 7.5 0.5 355 chr2R 17627744 intron CG10936 - chr2R 17627922 intron CG10936 - chr2R 17628099 intron CG10936 - chr2R_4_17625001 chr2R_17625001 RAL-441 829 chr2R 17627763 17627785 chr2R 17628087 17628132 13 341 2.0 6.5 4.2 2.5 369 chr2R 17627763 intron CG10936 - chr2R 17627948 intron CG10936 - chr2R 17628132 intron CG10936 - chr2R_13_17625001 chr2R_17625001 RAL-441 830 chr2R 17784007 17784036 chr2R 17784268 17784297 pogo 7 259 9.0 5.0 7.0 0.9 290 chr2R 17784007 intergenic mir-31a - chr2R 17784152 intergenic mir-31a - chr2R 17784297 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-441 831 chr2R 17784045 17784055 chr2R 17784267 17784296 pogo 4 239 7.0 5.0 6.0 0.6 251 chr2R 17784045 intergenic mir-31a - chr2R 17784170 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-441 832 chr2R 17794766 17794789 chr2R 17794865 17794888 6 98 0.0 2.0 1.0 3.0 122 chr2R 17794766 intron Dhit + chr2R 17794827 intron Dhit + chr2R 17794888 intron Dhit + chr2R_6_17790001 chr2R_17790001 RAL-441 833 chr2R 17920439 17920460 chr2R 17920514 17920556 4 91 2.5 0.5 1.5 1.6 117 chr2R 17920439 intron Elk + chr2R 17920498 intron Elk + chr2R 17920556 intron Elk + chr2R_4_17920001 chr2R_17920001 RAL-441 834 chr2R 17992086 17992134 chr2R 17992182 17992230 9 92 3.0 1.5 2.2 2.8 144 chr2R 17992086 intron dpr13 - chr2R 17992158 intron dpr13 - chr2R 17992230 intron dpr13 - chr2R_9_17990001 chr2R_17990001 RAL-441 835 chr2R 17997139 17997190 chr2R 17997240 17997290 11 95 3.5 3.5 3.5 2.4 151 chr2R 17997139 intron dpr13 - chr2R 17997214 intron dpr13 - chr2R 17997290 intron dpr13 - chr2R_11_17995001 chr2R_17995001 RAL-441 836 chr2R 18013947 18013984 chr2R 18014025 18014078 10 91 1.0 3.0 2.0 3.3 131 chr2R 18013947 intergenic not near genes chr2R 18014012 intergenic not near genes chr2R 18014078 intergenic not near genes chr2R_10_18010001 chr2R_18010001 RAL-441 837 chr2R 18031058 18031111 chr2R 18031586 18031604 17 527 1.0 1.0 1.0 8.5 546 chr2R 18031058 intergenic not near genes chr2R 18031331 intergenic not near genes chr2R 18031604 intergenic not near genes chr2R_17_18030001 chr2R_18030001 RAL-441 838 chr2R 18241813 18241846 chr2R 18241927 18241939 4 107 1.5 8.0 4.8 0.7 126 chr2R 18241813 intergenic not near genes chr2R 18241876 intergenic not near genes chr2R 18241939 intergenic not near genes chr2R_4_18240001 chr2R_18240001 RAL-441 839 chr2R 18358376 18358408 chr2R 18372608 18372640 roo 10 14230 10.5 4.5 7.5 1.2 14264 chr2R 18358376 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372640 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-441 840 chr2R 18405728 18405785 chr2R 18405827 18405884 6 99 1.0 0.0 0.5 4.0 156 chr2R 18405728 intergenic GstE6 +,GstE5 + chr2R 18405806 intergenic GstE6 +,GstE5 + chr2R 18405884 intergenic GstE6 + chr2R_6_18405001 chr2R_18405001 RAL-441 841 chr2R 18455415 18455464 chr2R 18455536 18455598 7 130 4.0 0.0 2.0 2.3 183 chr2R 18455415 intergenic not near genes chr2R 18455506 intergenic not near genes chr2R 18455598 intergenic not near genes chr2R_7_18455001 chr2R_18455001 RAL-441 842 chr2R 18487819 18487828 chr2R 18495289 18495297 blood 4 7468 4.5 6.0 5.2 0.6 7478 chr2R 18487819 intron CG30116 - chr2R 18491558 intron CG30116 - chr2R 18495297 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-441 843 chr2R 18513291 18513341 chr2R 18513393 18513442 8 101 0.0 4.0 2.0 2.7 151 chr2R 18513291 intergenic not near genes chr2R 18513366 intergenic not near genes chr2R 18513442 intergenic not near genes chr2R_8_18510001 chr2R_18510001 RAL-441 844 chr2R 18575138 18575155 chr2R 18575374 18575390 6 236 3.0 3.0 3.0 1.5 252 chr2R 18575138 intron GEFmeso - chr2R 18575264 intron GEFmeso - chr2R 18575390 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-441 845 chr2R 18575806 18575831 chr2R 18581984 18582039 3S18 11 6197 1.5 2.0 1.8 3.9 6233 chr2R 18575806 intron GEFmeso - chr2R 18578922 intron GEFmeso - chr2R 18582039 intron GEFmeso - chr2R_11_18575001 chr2R_18575001 RAL-441 846 chr2R 18590852 18590898 chr2R 18600018 18600057 roo 4 9167 4.0 2.0 3.0 1.0 9205 chr2R 18590852 intron GEFmeso - chr2R 18595454 intron GEFmeso - chr2R 18600057 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-441 847 chr2R 18608614 18608653 chr2R 18608709 18608735 9 89 2.0 6.0 4.0 1.8 121 chr2R 18608614 intron GEFmeso - chr2R 18608674 intron GEFmeso - chr2R 18608735 intron GEFmeso - chr2R_9_18605001 chr2R_18605001 RAL-441 848 chr2R 18646414 18646433 chr2R 18646579 18646598 4 165 3.0 3.0 3.0 1.0 184 chr2R 18646414 intron SP2637 - chr2R 18646506 intron SP2637 - chr2R 18646598 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-441 849 chr2R 18692880 18692910 chr2R 18692987 18693014 4 100 5.5 1.5 3.5 0.9 134 chr2R 18692880 intron Sik3 + chr2R 18692947 intron Sik3 + chr2R 18693014 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-441 850 chr2R 18738202 18738234 chr2R 18738298 18738330 9 96 0.5 1.0 0.8 5.0 128 chr2R 18738202 intron Hs3st-A + chr2R 18738266 intron Hs3st-A + chr2R 18738330 intron Hs3st-A + chr2R_9_18735001 chr2R_18735001 RAL-441 851 chr2R 18753773 18753823 chr2R 18758464 18758515 8 4693 32.0 39.5 35.8 0.2 4742 chr2R 18753773 3` UTR Hs3st-A + chr2R 18756144 exon Cyp12b2 + chr2R 18758515 exon Jabba - chr2R_8_18755001 chr2R_18755001 RAL-441 852 chr2R 18808136 18808183 chr2R 18808232 18808241 6 89 3.5 0.5 2.0 2.0 105 chr2R 18808136 intergenic CG15096 - chr2R 18808188 intergenic CG15096 - chr2R 18808241 intergenic CG15096 - chr2R_6_18805001 chr2R_18805001 RAL-441 853 chr2R 18862291 18862328 chr2R 18862398 18862408 5 101 0.0 0.0 0.0 5.0 117 chr2R 18862291 intergenic Jheh3 - chr2R 18862350 intergenic Jheh3 - chr2R 18862408 intergenic Jheh3 -,CG43069 + chr2R_5_18860001 chr2R_18860001 RAL-441 854 chr2R 18938491 18938540 chr2R 18938591 18938640 14 99 3.5 2.5 3.0 3.5 149 chr2R 18938491 intron sano + chr2R 18938566 intron sano + chr2R 18938640 intron sano + chr2R_14_18935001 chr2R_18935001 RAL-441 855 chr2R 18964900 18964951 chr2R 18964996 18965047 15 96 2.0 4.0 3.0 3.8 147 chr2R 18964900 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965047 intergenic not near genes chr2R_15_18960001 chr2R_18960001 RAL-441 856 chr2R 18984449 18984478 chr2R 18984727 18984757 6 278 4.5 2.5 3.5 1.3 308 chr2R 18984449 intergenic not near genes chr2R 18984603 intergenic not near genes chr2R 18984757 intergenic not near genes chr2R_6_18980001 chr2R_18980001 RAL-441 857 chr2R 18992008 18992048 chr2R 18992166 18992208 6 160 4.0 4.0 4.0 1.2 200 chr2R 18992008 intron tn + chr2R 18992108 intron tn + chr2R 18992208 intron tn + chr2R_6_18990001 chr2R_18990001 RAL-441 858 chr2R 19026026 19026057 chr2R 19026186 19026217 9 158 5.0 1.0 3.0 2.2 191 chr2R 19026026 intron 5-HT1B - chr2R 19026122 intron 5-HT1B - chr2R 19026217 intron 5-HT1B - chr2R_9_19025001 chr2R_19025001 RAL-441 859 chr2R 19048285 19048300 chr2R 19048624 19048639 4 339 0.0 11.0 5.5 0.6 354 chr2R 19048285 intergenic not near genes chr2R 19048462 intergenic not near genes chr2R 19048639 intergenic not near genes chr2R_4_19045001 chr2R_19045001 RAL-441 860 chr2R 19067726 19067748 chr2R 19067822 19067844 7 96 4.0 2.5 3.2 1.7 118 chr2R 19067726 intron 5-HT1A + chr2R 19067785 intron 5-HT1A + chr2R 19067844 intron 5-HT1A + chr2R_7_19065001 chr2R_19065001 RAL-441 861 chr2R 19168720 19168768 chr2R 19168820 19168871 8 102 1.0 0.5 0.8 4.4 151 chr2R 19168720 intron CG10737 + chr2R 19168796 intron CG10737 + chr2R 19168871 intron CG10737 + chr2R_8_19165001 chr2R_19165001 RAL-441 862 chr2R 19244459 19244468 chr2R 19244558 19244567 4 99 0.0 3.0 1.5 1.6 108 chr2R 19244459 intergenic not near genes chr2R 19244513 intergenic not near genes chr2R 19244567 intergenic not near genes chr2R_4_19240001 chr2R_19240001 RAL-441 863 chr2R 19300945 19300992 chr2R 19301043 19301095 10 101 2.0 2.0 2.0 3.3 150 chr2R 19300945 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301095 intron Tab2 + chr2R_10_19300001 chr2R_19300001 RAL-441 864 chr2R 19560649 19560699 chr2R 19560780 19560805 10 123 2.0 2.5 2.2 3.1 156 chr2R 19560649 intron sm - chr2R 19560727 intron sm - chr2R 19560805 intron sm - chr2R_10_19560001 chr2R_19560001 RAL-441 865 chr2R 19714693 19714727 chr2R 19714788 19714823 7 96 0.0 2.5 1.2 3.2 130 chr2R 19714693 3` UTR CG8517 + chr2R 19714758 3` UTR CG8517 + chr2R 19714823 3` UTR CG8517 + chr2R_7_19710001 chr2R_19710001 RAL-441 866 chr2R 19776578 19776618 chr2R 19779921 19779961 jockey 8 3340 6.0 4.5 5.2 1.3 3383 chr2R 19776578 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779961 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-441 867 chr2R 19794861 19794904 chr2R 19794972 19794992 8 106 1.5 3.0 2.2 2.5 131 chr2R 19794861 intergenic not near genes chr2R 19794926 intergenic not near genes chr2R 19794992 intergenic not near genes chr2R_8_19790001 chr2R_19790001 RAL-441 868 chr2R 19896106 19896133 chr2R 19896201 19896245 7 108 3.0 2.5 2.8 1.8 139 chr2R 19896106 intergenic not near genes chr2R 19896176 intergenic not near genes chr2R 19896245 intergenic not near genes chr2R_7_19895001 chr2R_19895001 RAL-441 869 chr2R 19904189 19904217 chr2R 19904284 19904296 9 91 5.0 2.5 3.8 1.9 107 chr2R 19904189 intergenic not near genes chr2R 19904242 intergenic not near genes chr2R 19904296 intergenic not near genes chr2R_9_19900001 chr2R_19900001 RAL-441 870 chr2R 20012393 20012402 chr2R 20012488 20012499 4 96 2.5 2.0 2.2 1.2 106 chr2R 20012393 intergenic not near genes chr2R 20012446 intergenic not near genes chr2R 20012499 intergenic not near genes chr2R_4_20010001 chr2R_20010001 RAL-441 871 chr2R 20069215 20069255 chr2R 20071874 20071913 opus 8 2658 1.0 5.0 3.0 2.0 2698 chr2R 20069215 intergenic not near genes chr2R 20070564 intergenic not near genes chr2R 20071913 intergenic not near genes chr2R_8_20070001 chr2R_20070001 RAL-441 872 chr2R 20118864 20118882 chr2R 20118968 20118989 6 104 3.0 3.5 3.2 1.4 125 chr2R 20118864 intergenic not near genes chr2R 20118926 intergenic not near genes chr2R 20118989 intergenic not near genes chr2R_6_20115001 chr2R_20115001 RAL-441 873 chr2R 20118887 20118901 chr2R 20118961 20119008 4 88 2.5 2.0 2.2 1.2 121 chr2R 20118887 intergenic not near genes chr2R 20118948 intergenic not near genes chr2R 20119008 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-441 874 chr2R 20162661 20162709 chr2R 20162798 20162834 13 131 3.5 1.0 2.2 4.1 173 chr2R 20162661 intergenic not near genes chr2R 20162748 intergenic not near genes chr2R 20162834 intergenic not near genes chr2R_13_20160001 chr2R_20160001 RAL-441 875 chr2R 20222942 20222991 chr2R 20223085 20223138 9 138 3.0 3.0 3.0 2.2 196 chr2R 20222942 intergenic not near genes chr2R 20223040 intergenic not near genes chr2R 20223138 intergenic not near genes chr2R_9_20220001 chr2R_20220001 RAL-441 876 chr2R 20223943 20223960 chr2R 20224047 20224061 4 100 5.5 0.5 3.0 1.0 118 chr2R 20223943 intergenic not near genes chr2R 20224002 intergenic not near genes chr2R 20224061 intergenic not near genes chr2R_4_20220001 chr2R_20220001 RAL-441 877 chr2R 20320696 20320731 chr2R 20320792 20320827 9 94 5.5 5.0 5.2 1.5 131 chr2R 20320696 intron CG8920 + chr2R 20320762 intron CG8920 + chr2R 20320827 intron CG8920 + chr2R_9_20320001 chr2R_20320001 RAL-441 878 chr2R 20475060 20475087 chr2R 20475143 20475187 4 96 0.0 1.5 0.8 2.2 127 chr2R 20475060 intron CG12484 + chr2R 20475124 intron CG12484 + chr2R 20475187 intron CG12484 + chr2R_4_20475001 chr2R_20475001 RAL-441 879 chr2R 20510330 20510358 chr2R 20510662 20510676 15 339 4.0 5.0 4.5 2.7 346 chr2R 20510330 intergenic not near genes chr2R 20510503 intergenic not near genes chr2R 20510676 intergenic CR44648 + chr2R_15_20510001 chr2R_20510001 RAL-441 880 chr2R 20698082 20698133 chr2R 20698218 20698269 9 136 2.0 0.5 1.2 4.1 187 chr2R 20698082 intergenic dpr + chr2R 20698176 intergenic dpr + chr2R 20698269 intergenic dpr + chr2R_9_20695001 chr2R_20695001 RAL-441 881 chr2R 20739429 20739451 chr2R 20744212 20744214 F-element 6 4782 7.0 3.5 5.2 1.0 4785 chr2R 20739429 intron dpr + chr2R 20741822 intron dpr + chr2R 20744214 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-441 882 chr2R 20739455 20739472 chr2R 20744209 20744243 F-element 6 4775 6.5 3.5 5.0 1.0 4788 chr2R 20739455 intron dpr + chr2R 20741849 intron dpr + chr2R 20744243 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-441 883 chr2R 20783293 20783330 chr2R 20788085 20788122 F-element 6 4787 2.5 5.0 3.8 1.2 4829 chr2R 20783293 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788122 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-441 884 chr2R 20830518 20830564 chr2R 20830617 20830664 14 92 1.5 4.5 3.0 3.5 146 chr2R 20830518 intron,intron insc -,sktl - chr2R 20830591 intron,intron insc -,sktl - chr2R 20830664 intron,intron insc -,sktl - chr2R_14_20830001 chr2R_20830001 RAL-441 885 chr2R 20842888 20842922 chr2R 20842991 20843025 4 103 1.0 3.5 2.2 1.2 137 chr2R 20842888 intergenic not near genes chr2R 20842956 intergenic not near genes chr2R 20843025 intergenic not near genes chr2R_4_20840001 chr2R_20840001 RAL-441 886 chr2R 20863108 20863137 chr2R 20863207 20863243 12 100 3.5 3.5 3.5 2.7 135 chr2R 20863108 intergenic not near genes chr2R 20863176 intergenic not near genes chr2R 20863243 intergenic not near genes chr2R_12_20860001 chr2R_20860001 RAL-441 887 chr2R 20964900 20964948 chr2R 20965002 20965054 13 100 4.0 1.0 2.5 3.7 154 chr2R 20964900 intergenic not near genes chr2R 20964977 intergenic not near genes chr2R 20965054 intergenic not near genes chr2R_13_20960001 chr2R_20960001 RAL-441 888 chr2R 21060617 21060650 chr2R 21060713 21060745 9 96 4.0 2.0 3.0 2.2 128 chr2R 21060617 intergenic CG15653 -,mRpL54 + chr2R 21060681 intergenic mRpL54 +,CG15653 - chr2R 21060745 intergenic mRpL54 +,CG15653 - chr2R_9_21060001 chr2R_21060001 RAL-441 889 chr2R 21109699 21109723 chr2R 21109799 21109821 8 100 6.0 1.5 3.8 1.7 122 chr2R 21109699 intron ktub + chr2R 21109760 intron ktub + chr2R 21109821 intron ktub + chr2R_8_21105001 chr2R_21105001 RAL-441 890 chr2R 21110776 21110823 chr2R 21110886 21110936 14 106 2.0 6.0 4.0 2.8 160 chr2R 21110776 intron ktub + chr2R 21110856 intron ktub + chr2R 21110936 intron ktub + chr2R_14_21110001 chr2R_21110001 RAL-441 891 chr2R 21158877 21158912 chr2R 21159021 21159056 6 144 5.0 5.5 5.2 1.0 179 chr2R 21158877 intron CG30389 - chr2R 21158966 intron CG30389 - chr2R 21159056 intron CG30389 - chr2R_6_21155001 chr2R_21155001 RAL-441 892 chr2R 21161793 21161834 chr2R 21161884 21161931 13 96 1.0 2.5 1.8 4.6 138 chr2R 21161793 3` UTR CG4266 - chr2R 21161862 3` UTR CG4266 - chr2R 21161931 3` UTR CG4266 - chr2R_13_21160001 chr2R_21160001 RAL-441 893 chr2R 21188198 21188248 chr2R 21188298 21188313 13 96 5.5 4.0 4.8 2.2 115 chr2R 21188198 exon tud + chr2R 21188256 exon tud + chr2R 21188313 intron tud + chr2R_13_21185001 chr2R_21185001 RAL-441 894 chr2R 21363118 21363184 chr2R 21363236 21363293 5 113 1.0 2.0 1.5 2.0 175 chr2R 21363118 intron cv-2 - chr2R 21363206 intron cv-2 - chr2R 21363293 intron cv-2 - chr2R_5_21360001 chr2R_21360001 RAL-441 895 chr2R 21417017 21417040 chr2R 21417116 21417139 9 97 6.5 4.0 5.2 1.5 122 chr2R 21417017 intron Sdc - chr2R 21417078 intron Sdc - chr2R 21417139 intron Sdc - chr2R_9_21415001 chr2R_21415001 RAL-441 896 chr2R 21417042 21417067 chr2R 21417112 21417147 10 94 3.0 4.0 3.5 2.2 105 chr2R 21417042 intron Sdc - chr2R 21417094 intron Sdc - chr2R 21417147 intron Sdc - chr2R_10_21415001 chr2R_21415001 RAL-441 897 chr2R 21447108 21447125 chr2R 21447219 21447223 4 115 0.0 1.0 0.5 2.7 115 chr2R 21447108 intron Sdc - chr2R 21447166 intron Sdc - chr2R 21447223 intron Sdc - chr2R_4_21445001 chr2R_21445001 RAL-441 898 chr2R 21467507 21467528 chr2R 21467614 21467633 4 105 8.0 1.5 4.8 0.7 126 chr2R 21467507 intron Sdc - chr2R 21467570 intron Sdc - chr2R 21467633 intron Sdc - chr2R_4_21465001 chr2R_21465001 RAL-441 899 chr2R 21469946 21469972 chr2R 21470051 21470055 5 98 1.0 9.0 5.0 0.8 109 chr2R 21469946 intron Sdc - chr2R 21470000 intron Sdc - chr2R 21470055 intron Sdc - chr2R_5_21470001 chr2R_21470001 RAL-441 900 chr2R 21700157 21700166 chr2R 21700249 21700271 4 99 4.5 7.5 6.0 0.6 114 chr2R 21700157 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_4_21700001 chr2R_21700001 RAL-441 901 chr2R 21700173 21700186 chr2R 21700245 21700292 6 94 1.0 7.0 4.0 1.2 119 chr2R 21700173 intron HmgZ - chr2R 21700232 intron HmgZ - chr2R 21700292 intron HmgZ - chr2R_6_21700001 chr2R_21700001 RAL-441 902 chr2R 21710921 21710957 chr2R 21711037 21711074 7 117 5.5 4.0 4.8 1.2 153 chr2R 21710921 intron,intron HmgD +,CG30403 - chr2R 21710998 intron,intron HmgD +,CG30403 - chr2R 21711074 intron,intron HmgD +,CG30403 - chr2R_7_21710001 chr2R_21710001 RAL-441 903 chr2R 21737710 21737758 chr2R 21738215 21738263 8 507 31.5 15.0 23.2 0.3 553 chr2R 21737710 intergenic not near genes chr2R 21737986 intergenic not near genes chr2R 21738263 intergenic not near genes chr2R_8_21735001 chr2R_21735001 RAL-441 904 chr2R 21753072 21753116 chr2R 21753577 21753621 roo 15 504 4.5 5.5 5.0 2.5 549 chr2R 21753072 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753621 intergenic not near genes chr2R_15_21750001 chr2R_21750001 RAL-441 905 chr2R 21783542 21783573 chr2R 21783666 21783698 7 125 4.0 2.5 3.2 1.7 156 chr2R 21783542 intergenic not near genes chr2R 21783620 intergenic not near genes chr2R 21783698 intergenic not near genes chr2R_7_21780001 chr2R_21780001 RAL-441 906 chr2R 21809509 21809538 chr2R 21817769 21817798 roo 10 8258 5.0 7.5 6.2 1.4 8289 chr2R 21809509 intergenic not near genes chr2R 21813654 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_10_21810001 chr2R_21810001 RAL-441 907 chr2R 21906254 21906295 chr2R 21906375 21906390 7 117 2.5 2.5 2.5 2.0 136 chr2R 21906254 intron Fili + chr2R 21906322 intron Fili + chr2R 21906390 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-441 908 chr2R 21912759 21912771 chr2R 21912829 21912872 4 88 4.5 1.5 3.0 1.0 113 chr2R 21912759 intron Fili + chr2R 21912816 intron Fili + chr2R 21912872 intron Fili + chr2R_4_21910001 chr2R_21910001 RAL-441 909 chr2R 21919854 21919907 chr2R 21919958 21919997 15 100 3.5 1.0 2.2 4.7 143 chr2R 21919854 intron Fili + chr2R 21919926 intron Fili + chr2R 21919997 intron Fili + chr2R_15_21915001 chr2R_21915001 RAL-441 910 chr2R 21932234 21932273 chr2R 21932327 21932327 8 88 6.5 5.5 6.0 1.1 93 chr2R 21932234 intron Fili + chr2R 21932280 intron Fili + chr2R 21932327 intron Fili + chr2R_8_21930001 chr2R_21930001 RAL-441 911 chr2R 21985520 21985561 chr2R 21985621 21985661 9 100 3.5 1.5 2.5 2.6 141 chr2R 21985520 intergenic CG30401 - chr2R 21985590 intergenic CG30401 - chr2R 21985661 3` UTR CG30401 - chr2R_9_21985001 chr2R_21985001 RAL-441 912 chr2R 22095943 22095977 chr2R 22096046 22096080 6 101 7.0 2.0 4.5 1.1 137 chr2R 22095943 intron CG11073 - chr2R 22096012 intron CG11073 - chr2R 22096080 intron CG11073 - chr2R_6_22095001 chr2R_22095001 RAL-441 913 chr2R 22124287 22124337 chr2R 22124394 22124446 10 108 2.5 2.5 2.5 2.9 159 chr2R 22124287 3` UTR mei-S332 + chr2R 22124366 3` UTR mei-S332 + chr2R 22124446 intergenic mei-S332 +,GM130 - chr2R_10_22120001 chr2R_22120001 RAL-441 914 chr2R 22272060 22272103 chr2R 22272182 22272225 17 122 4.0 2.0 3.0 4.2 165 chr2R 22272060 intron dve + chr2R 22272142 intron dve + chr2R 22272225 intron dve + chr2R_17_22270001 chr2R_22270001 RAL-441 915 chr2R 22290064 22290081 chr2R 22290168 22290185 7 104 7.0 3.0 5.0 1.2 121 chr2R 22290064 intergenic not near genes chr2R 22290124 intergenic not near genes chr2R 22290185 intergenic not near genes chr2R_7_22290001 chr2R_22290001 RAL-441 916 chr2R 22312757 22312802 chr2R 22312903 22312905 8 140 5.0 2.5 3.8 1.7 148 chr2R 22312757 intergenic CR44758 + chr2R 22312831 intergenic CR44758 + chr2R 22312905 5` UTR CR44758 + chr2R_8_22310001 chr2R_22310001 RAL-441 917 chr2R 22349689 22349715 chr2R 22351483 22351519 jockey 8 1801 6.5 9.0 7.8 0.9 1830 chr2R 22349689 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351519 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-441 918 chr2R 22360180 22360211 chr2R 22360284 22360314 8 103 1.5 2.5 2.0 2.7 134 chr2R 22360180 intron Liprin-gamma - chr2R 22360247 intron Liprin-gamma - chr2R 22360314 intron Liprin-gamma - chr2R_8_22360001 chr2R_22360001 RAL-441 919 chr2R 22360374 22360394 chr2R 22360826 22360830 jockey 4 448 7.0 4.0 5.5 0.6 456 chr2R 22360374 intron Liprin-gamma - chr2R 22360602 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-441 920 chr2R 22363683 22363716 chr2R 22363763 22363811 10 82 3.0 5.0 4.0 2.0 128 chr2R 22363683 intron Liprin-gamma - chr2R 22363747 intron Liprin-gamma - chr2R 22363811 intron Liprin-gamma - chr2R_10_22360001 chr2R_22360001 RAL-441 921 chr2R 22370760 22370774 chr2R 22370857 22370870 4 97 0.0 3.0 1.5 1.6 110 chr2R 22370760 intron Liprin-gamma - chr2R 22370815 intron Liprin-gamma - chr2R 22370870 intron Liprin-gamma - chr2R_4_22370001 chr2R_22370001 RAL-441 922 chr2R 22460360 22460401 chr2R 22460459 22460498 8 98 0.5 1.5 1.0 4.0 138 chr2R 22460360 intron CG10384 + chr2R 22460429 intron CG10384 + chr2R 22460498 intron CG10384 + chr2R_8_22460001 chr2R_22460001 RAL-441 923 chr2R 22499857 22499875 chr2R 22499951 22499971 8 95 0.5 6.0 3.2 1.9 114 chr2R 22499857 intron px - chr2R 22499914 intron px - chr2R 22499971 intron px - chr2R_8_22495001 chr2R_22495001 RAL-441 924 chr2R 22499877 22499887 chr2R 22499949 22499980 4 84 1.5 6.0 3.8 0.8 103 chr2R 22499877 intron px - chr2R 22499928 intron px - chr2R 22499980 intron px - chr2R_4_22495001 chr2R_22495001 RAL-441 925 chr2R 22524959 22524987 chr2R 22525055 22525081 10 93 3.5 6.5 5.0 1.7 122 chr2R 22524959 intron px - chr2R 22525020 intron px - chr2R 22525081 intron px - chr2R_10_22525001 chr2R_22525001 RAL-441 926 chr2R 22525744 22525786 chr2R 22529323 22529359 jockey 13 3578 2.5 3.5 3.0 3.2 3615 chr2R 22525744 intron px - chr2R 22527552 intron px - chr2R 22529359 intron px - chr2R_13_22525001 chr2R_22525001 RAL-441 927 chr2R 22774947 22774991 chr2R 22775386 22775429 jockey 16 437 6.0 4.0 5.0 2.7 482 chr2R 22774947 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775429 intron CG42260 - chr2R_16_22775001 chr2R_22775001 RAL-441 928 chr2R 22785721 22785740 chr2R 22785819 22785837 6 98 4.0 4.0 4.0 1.2 116 chr2R 22785721 intron CG42260 - chr2R 22785779 intron CG42260 - chr2R 22785837 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-441 929 chr2R 22787585 22787592 chr2R 22787738 22787745 6 153 3.5 1.5 2.5 1.7 160 chr2R 22787585 intron CG42260 - chr2R 22787665 intron CG42260 - chr2R 22787745 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-441 930 chr2R 22834773 22834800 chr2R 22834906 22834907 6 123 0.5 3.0 1.8 2.1 134 chr2R 22834773 intron CG12490 + chr2R 22834840 intron CG12490 + chr2R 22834907 intron CG12490 + chr2R_6_22830001 chr2R_22830001 RAL-441 931 chr2R 22912677 22912709 chr2R 22912787 22912816 13 111 2.0 6.0 4.0 2.6 139 chr2R 22912677 exon nahoda + chr2R 22912746 exon nahoda + chr2R 22912816 exon nahoda + chr2R_13_22910001 chr2R_22910001 RAL-441 932 chr2R 22951719 22951861 chr2R 22951864 22951965 5 166 0.0 0.0 0.0 5.0 246 chr2R 22951719 3` UTR CR32835 - chr2R 22951842 3` UTR CR32835 - chr2R 22951965 intron CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-441 933 chr2R 22968120 22968169 chr2R 22968229 22968251 15 104 2.5 2.5 2.5 4.3 131 chr2R 22968120 intergenic not near genes chr2R 22968186 intergenic not near genes chr2R 22968251 intergenic not near genes chr2R_15_22965001 chr2R_22965001 RAL-441 934 chr2R 22978265 22978309 chr2R 22978363 22978408 8 97 2.0 3.0 2.5 2.3 143 chr2R 22978265 intergenic not near genes chr2R 22978336 intergenic not near genes chr2R 22978408 intergenic not near genes chr2R_8_22975001 chr2R_22975001 RAL-441 935 chr2R 23052635 23052658 chr2R 23052731 23052754 5 96 6.0 4.5 5.2 0.8 119 chr2R 23052635 intergenic not near genes chr2R 23052694 intergenic not near genes chr2R 23052754 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-441 936 chr2R 23102748 23102790 chr2R 23102859 23102885 11 110 2.5 4.5 3.5 2.4 137 chr2R 23102748 exon Gr59c - chr2R 23102816 exon Gr59c - chr2R 23102885 exon Gr59c - chr2R_11_23100001 chr2R_23100001 RAL-441 937 chr2R 23158326 23158355 chr2R 23158423 23158452 5 94 7.5 11.5 9.5 0.5 126 chr2R 23158326 intron CG9899 + chr2R 23158389 intron CG9899 + chr2R 23158452 intron CG9899 + chr2R_5_23155001 chr2R_23155001 RAL-441 938 chr2R 23175017 23175067 chr2R 23175114 23175132 6 87 3.0 2.5 2.8 1.6 115 chr2R 23175017 intron CG34371 - chr2R 23175074 intron CG34371 - chr2R 23175132 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-441 939 chr2R 23188547 23188576 chr2R 23188635 23188674 8 96 3.0 2.0 2.5 2.3 127 chr2R 23188547 intron CG34371 - chr2R 23188610 intron CG34371 - chr2R 23188674 intron CG34371 - chr2R_8_23185001 chr2R_23185001 RAL-441 940 chr2R 23236842 23236851 chr2R 23236955 23236964 4 114 0.0 5.5 2.8 1.1 122 chr2R 23236842 intergenic not near genes chr2R 23236903 intergenic not near genes chr2R 23236964 intergenic not near genes chr2R_4_23235001 chr2R_23235001 RAL-441 941 chr2R 23291312 23291333 chr2R 23291410 23291430 6 96 3.5 0.0 1.8 2.1 118 chr2R 23291312 3` UTR CR44783 - chr2R 23291371 3` UTR CR44783 - chr2R 23291430 intergenic CR44783 - chr2R_6_23290001 chr2R_23290001 RAL-441 942 chr2R 23356257 23356276 chr2R 23356366 23356383 6 108 11.5 3.0 7.2 0.7 126 chr2R 23356257 3` UTR Rpi + chr2R 23356320 3` UTR Rpi + chr2R 23356383 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-441 943 chr2R 23356278 23356306 chr2R 23356362 23356415 10 98 7.5 2.5 5.0 1.7 137 chr2R 23356278 3` UTR Rpi + chr2R 23356346 3` UTR Rpi + chr2R 23356415 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-441 944 chr2R 23402590 23402639 chr2R 23407684 23407732 flea 11 5093 3.0 4.0 3.5 2.4 5142 chr2R 23402590 intergenic CG3520 - chr2R 23405161 intergenic not near genes chr2R 23407732 intergenic not near genes chr2R_11_23405001 chr2R_23405001 RAL-441 945 chr2R 23423723 23423774 chr2R 23423901 23423951 13 175 2.5 10.0 6.2 1.8 228 chr2R 23423723 intron CG9815 - chr2R 23423837 intron CG9815 - chr2R 23423951 intron CG9815 - chr2R_13_23420001 chr2R_23420001 RAL-441 946 chr2R 23437231 23437248 chr2R 23437300 23437303 5 64 3.0 3.0 3.0 1.2 72 chr2R 23437231 intergenic not near genes chr2R 23437267 intergenic not near genes chr2R 23437303 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-441 947 chr2R 23464510 23464563 chr2R 23464697 23464712 7 175 1.5 2.5 2.0 2.3 202 chr2R 23464510 intron CG43795 + chr2R 23464611 intron CG43795 + chr2R 23464712 intron CG43795 + chr2R_7_23460001 chr2R_23460001 RAL-441 948 chr2R 23567029 23567037 chr2R 23567112 23567130 5 90 4.0 2.5 3.2 1.2 101 chr2R 23567029 intron apt + chr2R 23567080 intron apt + chr2R 23567130 intron apt + chr2R_5_23565001 chr2R_23565001 RAL-441 949 chr2R 23607018 23607050 chr2R 23607119 23607151 7 99 4.0 1.5 2.8 1.8 133 chr2R 23607018 intron CG17664 - chr2R 23607084 intron CG17664 - chr2R 23607151 intron CG17664 - chr2R_7_23605001 chr2R_23605001 RAL-441 950 chr2R 23607057 23607192 chr2R 23607116 23607303 16 105 1.0 1.5 1.2 7.3 246 chr2R 23607057 intron CG17664 - chr2R 23607180 intron CG17664 - chr2R 23607303 intron CG17664 - chr2R_16_23605001 chr2R_23605001 RAL-441 951 chr2R 23619156 23619205 chr2R 23619304 23619341 16 147 4.0 5.0 4.5 2.9 185 chr2R 23619156 intergenic not near genes chr2R 23619248 intergenic not near genes chr2R 23619341 intergenic not near genes chr2R_16_23615001 chr2R_23615001 RAL-441 952 chr2R 23663353 23663396 chr2R 23663449 23663492 12 95 2.0 5.5 3.8 2.5 139 chr2R 23663353 intron Pde8 + chr2R 23663422 intron Pde8 + chr2R 23663492 intron Pde8 + chr2R_12_23660001 chr2R_23660001 RAL-441 953 chr2R 23758305 23758357 chr2R 23758401 23758442 9 92 4.5 2.5 3.5 2.0 137 chr2R 23758305 intron CG9850 - chr2R 23758374 intron CG9850 - chr2R 23758442 intron CG9850 - chr2R_9_23755001 chr2R_23755001 RAL-441 954 chr2R 23865807 23865852 chr2R 23865909 23865954 6 102 6.0 0.5 3.2 1.4 147 chr2R 23865807 intron CG5569 + chr2R 23865880 intron CG5569 + chr2R 23865954 intron CG5569 + chr2R_6_23865001 chr2R_23865001 RAL-441 955 chr2R 23914312 23914329 chr2R 23921937 23921950 412 7 7632 5.0 3.5 4.2 1.3 7638 chr2R 23914312 exon kcc + chr2R 23918131 intron kcc + chr2R 23921950 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-441 956 chr2R 23926811 23926859 chr2R 23926913 23926961 20 99 1.5 2.5 2.0 6.7 150 chr2R 23926811 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926886 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926961 3` UTR Ca-P60A - chr2R_20_23925001 chr2R_23925001 RAL-441 957 chr2R 24031374 24031412 chr2R 24031470 24031516 12 93 6.0 5.5 5.8 1.8 142 chr2R 24031374 5` UTR CG30172 - chr2R 24031445 intergenic CG30172 -,Chi - chr2R 24031516 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-441 958 chr2R 24147047 24147095 chr2R 24154645 24154692 412 10 7596 4.0 6.5 5.2 1.6 7645 chr2R 24147047 intron Dat + chr2R 24150870 intron Dat + chr2R 24154692 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-441 959 chr2R 24166983 24167014 chr2R 24167075 24167086 8 88 4.0 1.0 2.5 2.3 103 chr2R 24166983 intron CG3328 + chr2R 24167034 intron CG3328 + chr2R 24167086 intron CG3328 + chr2R_8_24165001 chr2R_24165001 RAL-441 960 chr2R 24177214 24177266 chr2R 24184720 24184770 412 13 7505 8.5 3.5 6.0 1.9 7556 chr2R 24177214 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184770 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-441 961 chr2R 24226849 24226873 chr2R 24226944 24226962 7 93 8.0 5.5 6.8 0.9 113 chr2R 24226849 intron CG30419 - chr2R 24226906 intron CG30419 - chr2R 24226962 intron CG30419 - chr2R_7_24225001 chr2R_24225001 RAL-441 962 chr2R 24226876 24226887 chr2R 24226943 24226982 4 86 6.0 5.0 5.5 0.6 106 chr2R 24226876 intron CG30419 - chr2R 24226929 intron CG30419 - chr2R 24226982 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-441 963 chr2R 24260414 24260462 chr2R 24260584 24260602 10 168 3.5 1.5 2.5 2.9 188 chr2R 24260414 intron CG3376 + chr2R 24260508 intron CG3376 + chr2R 24260602 intron CG3376 + chr2R_10_24260001 chr2R_24260001 RAL-441 964 chr2R 24271702 24271717 chr2R 24271795 24271813 6 95 9.0 6.5 7.8 0.7 111 chr2R 24271702 intergenic not near genes chr2R 24271758 intergenic not near genes chr2R 24271813 intergenic not near genes chr2R_6_24270001 chr2R_24270001 RAL-441 965 chr2R 24303874 24303894 chr2R 24303974 24303982 7 101 9.5 1.5 5.5 1.1 108 chr2R 24303874 intergenic not near genes chr2R 24303928 intergenic not near genes chr2R 24303982 intergenic not near genes chr2R_7_24300001 chr2R_24300001 RAL-441 966 chr2R 24351392 24351436 chr2R 24351493 24351520 11 98 1.5 2.5 2.0 3.7 128 chr2R 24351392 intron bs + chr2R 24351456 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_11_24350001 chr2R_24350001 RAL-441 967 chr2R 24353412 24353431 chr2R 24361793 24361798 roo 5 8378 5.0 5.0 5.0 0.8 8386 chr2R 24353412 intron,intron bs +,CR44811 - chr2R 24357605 intron,intron bs +,CR44811 - chr2R 24361798 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-441 968 chr2R 24353432 24353447 chr2R 24361791 24361829 roo 7 8378 2.0 5.0 3.5 1.6 8397 chr2R 24353432 intron,intron bs +,CR44811 - chr2R 24357630 intron,intron bs +,CR44811 - chr2R 24361829 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-441 969 chr2R 24366236 24366273 chr2R 24366343 24366380 6 105 2.0 2.0 2.0 2.0 144 chr2R 24366236 intron,intron bs +,CR44811 - chr2R 24366308 intron,intron bs +,CR44811 - chr2R 24366380 intron,intron bs +,CR44811 - chr2R_6_24365001 chr2R_24365001 RAL-441 970 chr2R 24383806 24383852 chr2R 24383906 24383937 12 99 4.0 2.5 3.2 2.9 131 chr2R 24383806 intron mAChR-A - chr2R 24383872 intron mAChR-A - chr2R 24383937 exon mAChR-A - chr2R_12_24380001 chr2R_24380001 RAL-441 971 chr2R 24430700 24430949 chr2R 24430854 24431049 5 107 0.5 0.5 0.5 3.3 349 chr2R 24430700 intergenic CG15873 - chr2R 24430874 intergenic CG15873 -,Pgam5-2 - chr2R 24431049 intergenic Pgam5-2 -,CG15873 - chr2R_5_24430001 chr2R_24430001 RAL-441 972 chr2R 24470370 24470392 chr2R 24470453 24470506 9 103 0.5 2.5 1.5 3.6 136 chr2R 24470370 intron CG13579 + chr2R 24470438 intron CG13579 + chr2R 24470506 intron CG13579 + chr2R_9_24470001 chr2R_24470001 RAL-441 973 chr2R 24493076 24493085 chr2R 24493185 24493194 4 108 1.5 9.0 5.2 0.6 118 chr2R 24493076 intergenic CG13590 -,CG13589 - chr2R 24493135 intergenic CG13590 -,CG13589 - chr2R 24493194 intergenic CG13590 -,CG13589 - chr2R_4_24490001 chr2R_24490001 RAL-441 974 chr2R 24518021 24518049 chr2R 24518102 24518110 7 73 4.0 1.5 2.8 1.8 89 chr2R 24518021 intergenic not near genes chr2R 24518066 intergenic not near genes chr2R 24518110 intergenic not near genes chr2R_7_24515001 chr2R_24515001 RAL-441 975 chr2R 24542948 24542994 chr2R 24543047 24543093 12 95 3.5 6.0 4.8 2.1 145 chr2R 24542948 intron,intron CG4622 -,ITP + chr2R 24543020 intron,intron CG4622 -,ITP + chr2R 24543093 intron,intron CG4622 -,ITP + chr2R_12_24540001 chr2R_24540001 RAL-441 976 chr2R 24590095 24590140 chr2R 24590206 24590247 8 100 4.5 4.0 4.2 1.5 152 chr2R 24590095 intron pio + chr2R 24590171 intron pio + chr2R 24590247 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-441 977 chr2R 24647576 24647615 chr2R 24655153 24655190 412 8 7576 4.0 3.5 3.8 1.7 7614 chr2R 24647576 intergenic not near genes chr2R 24651383 intergenic not near genes chr2R 24655190 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-441 978 chr2R 24727864 24727907 chr2R 24735392 24735409 mdg1 7 7517 3.0 2.5 2.8 1.8 7545 chr2R 24727864 intron Mid1 - chr2R 24731636 intron Mid1 - chr2R 24735409 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-441 979 chr2R 24763626 24763644 chr2R 24765585 24765617 G2 6 1982 2.0 3.5 2.8 1.6 1991 chr2R 24763626 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765617 exon CG3894 + chr2R_6_24760001 chr2R_24760001 RAL-441 980 chr2R 24802179 24802201 chr2R 24802249 24802254 4 71 5.0 2.0 3.5 0.9 75 chr2R 24802179 intergenic not near genes chr2R 24802216 intergenic not near genes chr2R 24802254 intergenic not near genes chr2R_4_24800001 chr2R_24800001 RAL-441 981 chr2R 24859828 24859870 chr2R 24859929 24859962 10 96 3.5 3.0 3.2 2.4 134 chr2R 24859828 5` UTR CR44829 + chr2R 24859895 5` UTR CR44829 + chr2R 24859962 5` UTR CR44829 + chr2R_10_24855001 chr2R_24855001 RAL-441 982 chr2R 24884035 24884077 chr2R 24884137 24884179 14 102 5.0 3.5 4.2 2.7 144 chr2R 24884035 intron NKAIN + chr2R 24884107 intron NKAIN + chr2R 24884179 intron NKAIN + chr2R_14_24880001 chr2R_24880001 RAL-441 983 chr2R 25014546 25014574 chr2R 25014618 25014666 9 91 4.0 2.5 3.2 2.1 120 chr2R 25014546 intron uzip + chr2R 25014606 intron uzip + chr2R 25014666 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-441 984 chr2R 25101254 25101309 chr2R 25101376 25101412 16 119 3.5 2.0 2.8 4.2 158 chr2R 25101254 intron lov - chr2R 25101333 intron lov - chr2R 25101412 intron lov - chr2R_16_25100001 chr2R_25100001 RAL-441 985 chr2R 25141632 25141677 chr2R 25159342 25159386 roo 10 17704 4.5 2.0 3.2 2.4 17754 chr2R 25141632 intergenic not near genes chr2R 25150509 intergenic not near genes chr2R 25159386 intergenic not near genes chr2R_10_25150001 chr2R_25150001 RAL-441 986 chr2R 25180748 25180783 chr2R 25180845 25180880 8 97 1.0 2.5 1.8 2.9 132 chr2R 25180748 intergenic not near genes chr2R 25180814 intergenic not near genes chr2R 25180880 intergenic not near genes chr2R_8_25180001 chr2R_25180001 RAL-441 987 chr2R 25207810 25207844 chr2R 25208232 25208266 8 422 10.0 13.5 11.8 0.6 456 chr2R 25207810 5` UTR CG9380 - chr2R 25208038 intron CG9380 - chr2R 25208266 intron CG9380 - chr2R_8_25205001 chr2R_25205001 RAL-441 988 chr3L 68960 69016 chr3L 69067 69098 17 102 2.0 4.5 3.2 4.0 138 chr3L 68960 3` UTR Lsp1gamma + chr3L 69029 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_17_65001 chr3L_65001 RAL-441 989 chr3L 88722 88778 chr3L 90662 90716 16 1935 5.0 5.0 5.0 2.7 1994 chr3L 88722 intergenic not near genes chr3L 89719 intergenic not near genes chr3L 90716 intergenic not near genes chr3L_16_85001 chr3L_85001 RAL-441 990 chr3L 110196 110244 chr3L 119383 119431 roo 9 9186 5.0 4.0 4.5 1.6 9235 chr3L 110196 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119431 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-441 991 chr3L 274238 274269 chr3L 274324 274338 8 88 6.5 4.5 5.5 1.2 100 chr3L 274238 exon miple2 + chr3L 274288 intron miple2 + chr3L 274338 intron miple2 + chr3L_8_270001 chr3L_270001 RAL-441 992 chr3L 339463 339473 chr3L 339528 339549 5 85 1.0 8.5 4.8 0.9 86 chr3L 339463 intron,intron Ptpmeg +,mthl10 - chr3L 339506 intron,intron Ptpmeg +,mthl10 - chr3L 339549 intron,intron Ptpmeg +,mthl10 - chr3L_5_335001 chr3L_335001 RAL-441 993 chr3L 349382 349412 chr3L 349469 349518 9 103 2.0 5.5 3.8 1.9 136 chr3L 349382 intron Ptpmeg + chr3L 349450 intron Ptpmeg + chr3L 349518 intron Ptpmeg + chr3L_9_345001 chr3L_345001 RAL-441 994 chr3L 402672 402709 chr3L 409742 409782 297 8 7070 6.0 3.5 4.8 1.4 7110 chr3L 402672 intergenic not near genes chr3L 406227 intergenic not near genes chr3L 409782 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-441 995 chr3L 523642 523660 chr3L 523782 523800 5 141 4.0 4.0 4.0 1.0 158 chr3L 523642 intron klar - chr3L 523721 intron klar - chr3L 523800 intron klar - chr3L_5_520001 chr3L_520001 RAL-441 996 chr3L 523662 523677 chr3L 523781 523781 8 132 2.5 4.0 3.2 1.9 119 chr3L 523662 intron klar - chr3L 523722 intron klar - chr3L 523781 intron klar - chr3L_8_520001 chr3L_520001 RAL-441 997 chr3L 526763 526800 chr3L 526860 526901 12 100 2.5 1.0 1.8 4.3 138 chr3L 526763 intron klar - chr3L 526832 intron klar - chr3L 526901 intron klar - chr3L_12_525001 chr3L_525001 RAL-441 998 chr3L 561466 561503 chr3L 561563 561583 5 94 2.0 0.5 1.2 2.3 117 chr3L 561466 intron hipk + chr3L 561524 intron hipk + chr3L 561583 intron hipk + chr3L_5_560001 chr3L_560001 RAL-441 999 chr3L 648489 648512 chr3L 648570 648595 4 91 2.5 0.0 1.2 1.8 106 chr3L 648489 intergenic Gale + chr3L 648542 intergenic Gale + chr3L 648595 5` UTR Gale + chr3L_4_645001 chr3L_645001 RAL-441 1000 chr3L 651369 651418 chr3L 651475 651526 22 107 5.5 3.0 4.2 4.2 157 chr3L 651369 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651526 intergenic CG3402 -,Gale + chr3L_22_650001 chr3L_650001 RAL-441 1001 chr3L 690259 690307 chr3L 690355 690403 8 90 3.5 3.5 3.5 1.8 144 chr3L 690259 intergenic CG32483 -,RabX6 + chr3L 690331 intergenic RabX6 +,CG32483 - chr3L 690403 intergenic RabX6 +,CG32483 - chr3L_8_690001 chr3L_690001 RAL-441 1002 chr3L 705226 705258 chr3L 705322 705324 12 92 5.0 2.5 3.8 2.5 98 chr3L 705226 intergenic CR44514 + chr3L 705275 intergenic CR44514 + chr3L 705324 intergenic CR44514 + chr3L_12_705001 chr3L_705001 RAL-441 1003 chr3L 705887 705911 chr3L 705992 706027 6 111 7.0 4.0 5.5 0.9 140 chr3L 705887 intergenic CG13895 -,CR44514 + chr3L 705957 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-441 1004 chr3L 789898 789935 chr3L 790402 790440 roo 10 504 4.5 4.5 4.5 1.8 542 chr3L 789898 intergenic not near genes chr3L 790169 intergenic not near genes chr3L 790440 intergenic not near genes chr3L_10_790001 chr3L_790001 RAL-441 1005 chr3L 858009 858029 chr3L 866492 866495 Tirant 4 8481 6.0 4.0 5.0 0.7 8486 chr3L 858009 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866495 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-441 1006 chr3L 904242 904251 chr3L 904326 904340 5 93 4.0 2.5 3.2 1.2 98 chr3L 904242 intergenic CG13905 + chr3L 904291 intergenic CG13905 + chr3L 904340 intergenic not near genes chr3L_5_900001 chr3L_900001 RAL-441 1007 chr3L 925155 925202 chr3L 932600 932648 mdg1 15 7444 3.5 2.0 2.8 3.9 7493 chr3L 925155 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932648 intron Glut1 + chr3L_15_925001 chr3L_925001 RAL-441 1008 chr3L 939758 939797 chr3L 940894 940937 jockey 18 1139 5.5 6.0 5.8 2.6 1179 chr3L 939758 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940937 intron Glut1 + chr3L_18_940001 chr3L_940001 RAL-441 1009 chr3L 976550 976571 chr3L 976696 976716 4 146 2.0 5.5 3.8 0.8 166 chr3L 976550 intron Glut1 + chr3L 976633 intron Glut1 + chr3L 976716 intron Glut1 + chr3L_4_975001 chr3L_975001 RAL-441 1010 chr3L 1010995 1011028 chr3L 1011084 1011102 10 95 1.5 4.5 3.0 2.5 107 chr3L 1010995 intron trio - chr3L 1011048 intron trio - chr3L 1011102 intron trio - chr3L_10_1010001 chr3L_1010001 RAL-441 1011 chr3L 1015008 1015054 chr3L 1015140 1015168 6 119 6.0 2.0 4.0 1.2 160 chr3L 1015008 intron trio - chr3L 1015088 intron trio - chr3L 1015168 intron trio - chr3L_6_1015001 chr3L_1015001 RAL-441 1012 chr3L 1031556 1031600 chr3L 1031652 1031663 4 78 6.5 6.5 6.5 0.5 107 chr3L 1031556 intron trio - chr3L 1031610 intron trio - chr3L 1031663 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-441 1013 chr3L 1040535 1040565 chr3L 1040639 1040669 6 100 5.0 4.5 4.8 1.0 134 chr3L 1040535 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040669 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-441 1014 chr3L 1061575 1061611 chr3L 1061692 1061717 9 117 2.0 3.0 2.5 2.6 142 chr3L 1061575 intron bab1 - chr3L 1061646 intron bab1 - chr3L 1061717 intron bab1 - chr3L_9_1060001 chr3L_1060001 RAL-441 1015 chr3L 1109612 1109660 chr3L 1109720 1109765 14 104 4.0 1.5 2.8 3.7 153 chr3L 1109612 intergenic not near genes chr3L 1109688 intergenic not near genes chr3L 1109765 intergenic not near genes chr3L_14_1105001 chr3L_1105001 RAL-441 1016 chr3L 1154142 1154163 chr3L 1163281 1163331 roo 9 9161 2.0 3.0 2.5 2.6 9189 chr3L 1154142 intron bab2 - chr3L 1158736 intron bab2 - chr3L 1163331 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-441 1017 chr3L 1219583 1219623 chr3L 1227332 1227341 412 13 7743 3.0 3.0 3.0 3.2 7758 chr3L 1219583 intron mwh + chr3L 1223462 intron mwh + chr3L 1227341 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-441 1018 chr3L 1257624 1257657 chr3L 1257724 1257757 14 99 0.5 4.0 2.2 4.4 133 chr3L 1257624 intron CG9134 + chr3L 1257690 intron CG9134 + chr3L 1257757 intron CG9134 + chr3L_14_1255001 chr3L_1255001 RAL-441 1019 chr3L 1310986 1311032 chr3L 1315840 1315872 6 4850 25.5 30.5 28.0 0.2 4886 chr3L 1310986 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-441 1020 chr3L 1324628 1324655 chr3L 1324726 1324749 9 95 3.5 3.0 3.2 2.1 121 chr3L 1324628 intron Myo61F + chr3L 1324688 intron Myo61F + chr3L 1324749 intron Myo61F + chr3L_9_1320001 chr3L_1320001 RAL-441 1021 chr3L 1347159 1347168 chr3L 1347247 1347249 6 96 5.0 5.0 5.0 1.0 90 chr3L 1347159 intron Ptp61F - chr3L 1347204 intron Ptp61F - chr3L 1347249 intron Ptp61F - chr3L_6_1345001 chr3L_1345001 RAL-441 1022 chr3L 1385157 1385193 chr3L 1385263 1385297 10 104 4.0 4.5 4.2 1.9 140 chr3L 1385157 intron,intron Ptp61F -,ru + chr3L 1385227 intron,intron Ptp61F -,ru + chr3L 1385297 intron,intron Ptp61F -,ru + chr3L_10_1385001 chr3L_1385001 RAL-441 1023 chr3L 1396718 1396753 chr3L 1396822 1396832 9 98 31.5 32.0 31.8 0.3 114 chr3L 1396718 intron Ptp61F - chr3L 1396775 intron Ptp61F - chr3L 1396832 intron Ptp61F - chr3L_9_1395001 chr3L_1395001 RAL-441 1024 chr3L 1415766 1415801 chr3L 1415866 1415882 5 89 1.5 6.5 4.0 1.0 116 chr3L 1415766 intron Ptp61F - chr3L 1415824 intron Ptp61F - chr3L 1415882 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-441 1025 chr3L 1415802 1415805 chr3L 1415864 1415906 5 86 1.5 5.5 3.5 1.1 104 chr3L 1415802 intron Ptp61F - chr3L 1415854 intron Ptp61F - chr3L 1415906 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-441 1026 chr3L 1505980 1506009 chr3L 1513597 1513625 17.6 6 7614 5.0 3.5 4.2 1.2 7645 chr3L 1505980 intron,intron Psa +,cue - chr3L 1509802 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-441 1027 chr3L 1528567 1528607 chr3L 1528666 1528681 7 101 3.0 0.0 1.5 2.8 114 chr3L 1528567 intron CG12090 - chr3L 1528624 intron CG12090 - chr3L 1528681 intron CG12090 - chr3L_7_1525001 chr3L_1525001 RAL-441 1028 chr3L 1569518 1569524 chr3L 1569599 1569619 5 92 5.0 5.0 5.0 0.8 101 chr3L 1569518 5` UTR CG12004 + chr3L 1569568 intron CG12004 + chr3L 1569619 intron CG12004 + chr3L_5_1565001 chr3L_1565001 RAL-441 1029 chr3L 1585918 1585935 chr3L 1586019 1586036 8 101 3.5 4.5 4.0 1.6 118 chr3L 1585918 intron CG13917 + chr3L 1585977 intron CG13917 + chr3L 1586036 intron CG13917 + chr3L_8_1585001 chr3L_1585001 RAL-441 1030 chr3L 1728502 1728550 chr3L 1728601 1728652 17 101 3.5 2.0 2.8 4.5 150 chr3L 1728502 intron drpr - chr3L 1728577 intron drpr - chr3L 1728652 intron drpr - chr3L_17_1725001 chr3L_1725001 RAL-441 1031 chr3L 1740840 1740885 chr3L 1741099 1741129 pogo 9 258 5.5 2.5 4.0 1.8 289 chr3L 1740840 intron Gk + chr3L 1740984 intron Gk + chr3L 1741129 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-441 1032 chr3L 1805683 1805707 chr3L 1805871 1805901 5 192 4.0 1.5 2.8 1.3 218 chr3L 1805683 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805901 intron CG42676 + chr3L_5_1805001 chr3L_1805001 RAL-441 1033 chr3L 1882343 1882379 chr3L 1882464 1882502 6 122 3.5 6.0 4.8 1.0 159 chr3L 1882343 intron CG13937 - chr3L 1882422 intron CG13937 - chr3L 1882502 intron CG13937 - chr3L_6_1880001 chr3L_1880001 RAL-441 1034 chr3L 1885272 1885315 chr3L 1885376 1885417 10 95 4.5 5.5 5.0 1.7 145 chr3L 1885272 intergenic Aprt -,Tmhs + chr3L 1885344 intergenic Tmhs +,Aprt - chr3L 1885417 intergenic Tmhs +,Aprt - chr3L_10_1885001 chr3L_1885001 RAL-441 1035 chr3L 1923003 1923029 chr3L 1923096 1923130 16 105 4.5 3.0 3.8 3.3 127 chr3L 1923003 intron Dbx + chr3L 1923066 intron Dbx + chr3L 1923130 intron Dbx + chr3L_16_1920001 chr3L_1920001 RAL-441 1036 chr3L 1924962 1924975 chr3L 1925103 1925132 6 154 0.5 0.5 0.5 4.0 170 chr3L 1924962 exon Dbx + chr3L 1925047 intron Dbx + chr3L 1925132 intron Dbx + chr3L_6_1925001 chr3L_1925001 RAL-441 1037 chr3L 1991114 1991139 chr3L 1991212 1991235 10 95 6.0 5.0 5.5 1.5 121 chr3L 1991114 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991235 intergenic not near genes chr3L_10_1990001 chr3L_1990001 RAL-441 1038 chr3L 2025534 2025545 chr3L 2025594 2025602 8 72 4.5 2.0 3.2 1.9 68 chr3L 2025534 intergenic not near genes chr3L 2025568 intergenic not near genes chr3L 2025602 intergenic not near genes chr3L_8_2025001 chr3L_2025001 RAL-441 1039 chr3L 2035104 2035306 chr3L 2035297 2035403 4 120 0.0 0.0 0.0 4.0 299 chr3L 2035104 intergenic not near genes chr3L 2035254 intergenic not near genes chr3L 2035403 intergenic not near genes chr3L_4_2035001 chr3L_2035001 RAL-441 1040 chr3L 2052034 2052082 chr3L 2052227 2052256 13 191 4.5 2.5 3.5 2.9 222 chr3L 2052034 intron sls - chr3L 2052145 intron sls - chr3L 2052256 intron sls - chr3L_13_2050001 chr3L_2050001 RAL-441 1041 chr3L 2108257 2108275 chr3L 2113481 2113499 copia 6 5224 2.5 4.5 3.5 1.3 5242 chr3L 2108257 intron sls - chr3L 2110878 intron sls - chr3L 2113499 intron sls - chr3L_6_2110001 chr3L_2110001 RAL-441 1042 chr3L 2139193 2139222 chr3L 2139294 2139323 7 101 5.5 4.5 5.0 1.2 130 chr3L 2139193 intron zormin - chr3L 2139258 intron zormin - chr3L 2139323 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-441 1043 chr3L 2168766 2168803 chr3L 2168874 2168914 10 108 3.5 6.5 5.0 1.7 148 chr3L 2168766 exon CG15879 - chr3L 2168840 intron CG15879 - chr3L 2168914 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-441 1044 chr3L 2307994 2308029 chr3L 2308120 2308154 8 123 5.0 3.5 4.2 1.5 160 chr3L 2307994 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308154 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-441 1045 chr3L 2332984 2333007 chr3L 2333247 2333295 7 278 5.0 3.5 4.2 1.3 311 chr3L 2332984 intron MsR1 + chr3L 2333140 intron MsR1 + chr3L 2333295 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-441 1046 chr3L 2411318 2411338 chr3L 2411415 2411434 7 97 2.0 1.5 1.8 2.5 116 chr3L 2411318 intron CG45186 + chr3L 2411376 intron CG45186 + chr3L 2411434 intron CG45186 + chr3L_7_2410001 chr3L_2410001 RAL-441 1047 chr3L 2447495 2447534 chr3L 2456661 2456710 roo 5 9168 3.0 5.0 4.0 1.0 9215 chr3L 2447495 intron CG45186 + chr3L 2452102 intron CG45186 + chr3L 2456710 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-441 1048 chr3L 2467431 2467482 chr3L 2467547 2467598 5 117 2.5 0.0 1.2 2.3 167 chr3L 2467431 intron CG45186 + chr3L 2467514 intron CG45186 + chr3L 2467598 intron CG45186 + chr3L_5_2465001 chr3L_2465001 RAL-441 1049 chr3L 2483594 2483607 chr3L 2483873 2483883 5 277 12.0 3.5 7.8 0.6 289 chr3L 2483594 intron CG45186 + chr3L 2483738 intron CG45186 + chr3L 2483883 intron CG45186 + chr3L_5_2480001 chr3L_2480001 RAL-441 1050 chr3L 2533648 2533683 chr3L 2533729 2533763 5 72 2.5 3.5 3.0 1.2 115 chr3L 2533648 intron Spn - chr3L 2533706 intron Spn - chr3L 2533763 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-441 1051 chr3L 2534617 2534642 chr3L 2534707 2534729 5 97 0.0 5.5 2.8 1.3 112 chr3L 2534617 intron Spn - chr3L 2534673 intron Spn - chr3L 2534729 exon Spn - chr3L_5_2530001 chr3L_2530001 RAL-441 1052 chr3L 2546741 2546746 chr3L 2546850 2546855 4 109 7.5 0.0 3.8 0.8 114 chr3L 2546741 intron Spn - chr3L 2546798 intron Spn - chr3L 2546855 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-441 1053 chr3L 2561529 2561558 chr3L 2561626 2561655 11 96 0.5 6.0 3.2 2.6 126 chr3L 2561529 intron msn - chr3L 2561592 intron msn - chr3L 2561655 intron msn - chr3L_11_2560001 chr3L_2560001 RAL-441 1054 chr3L 2585305 2585339 chr3L 2585415 2585451 11 106 2.0 3.0 2.5 3.1 146 chr3L 2585305 intron msn - chr3L 2585378 intron msn - chr3L 2585451 intron msn - chr3L_11_2585001 chr3L_2585001 RAL-441 1055 chr3L 2683924 2683978 chr3L 2684020 2684074 16 94 3.0 1.0 2.0 5.3 150 chr3L 2683924 intron Fife - chr3L 2683999 intron Fife - chr3L 2684074 intron Fife - chr3L_16_2680001 chr3L_2680001 RAL-441 1056 chr3L 2719523 2719560 chr3L 2719645 2719682 8 119 1.5 1.5 1.5 3.2 159 chr3L 2719523 3` UTR Mrtf - chr3L 2719602 3` UTR Mrtf - chr3L 2719682 3` UTR Mrtf - chr3L_8_2715001 chr3L_2715001 RAL-441 1057 chr3L 2735590 2735633 chr3L 2735702 2735741 7 111 7.0 5.0 6.0 1.0 151 chr3L 2735590 intron Mrtf - chr3L 2735666 intron Mrtf - chr3L 2735741 intron Mrtf - chr3L_7_2735001 chr3L_2735001 RAL-441 1058 chr3L 2766715 2766764 chr3L 2766832 2766876 9 114 3.0 2.5 2.8 2.4 161 chr3L 2766715 intergenic Mrtf -,Non2 + chr3L 2766796 intergenic Non2 +,Mrtf - chr3L 2766876 intergenic Non2 +,Mrtf - chr3L_9_2765001 chr3L_2765001 RAL-441 1059 chr3L 2795706 2795744 chr3L 2795849 2795887 7 143 2.0 2.0 2.0 2.3 181 chr3L 2795706 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795887 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-441 1060 chr3L 2927838 2927868 chr3L 2936114 2936165 Tirant 12 8293 2.0 0.0 1.0 6.0 8327 chr3L 2927838 intron Shab + chr3L 2932002 intron Shab + chr3L 2936165 intron Shab + chr3L_12_2930001 chr3L_2930001 RAL-441 1061 chr3L 3028323 3028369 chr3L 3028418 3028466 13 95 3.0 1.5 2.2 4.1 143 chr3L 3028323 intergenic not near genes chr3L 3028394 intergenic not near genes chr3L 3028466 intergenic not near genes chr3L_13_3025001 chr3L_3025001 RAL-441 1062 chr3L 3040312 3040330 chr3L 3042121 3042138 S-element 4 1805 2.0 0.5 1.2 1.8 1826 chr3L 3040312 3` UTR CG2162 + chr3L 3041225 intergenic not near genes chr3L 3042138 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-441 1063 chr3L 3042932 3042975 chr3L 3043037 3043059 10 101 3.5 1.5 2.5 2.9 127 chr3L 3042932 intron Jafrac2 + chr3L 3042996 intron Jafrac2 + chr3L 3043059 exon Jafrac2 + chr3L_10_3040001 chr3L_3040001 RAL-441 1064 chr3L 3103431 3103471 chr3L 3103530 3103568 9 98 2.0 1.5 1.8 3.2 137 chr3L 3103431 intron Cht7 - chr3L 3103500 intron Cht7 - chr3L 3103568 intron Cht7 - chr3L_9_3100001 chr3L_3100001 RAL-441 1065 chr3L 3252319 3252327 chr3L 3252415 3252423 4 96 2.0 0.5 1.2 1.8 104 chr3L 3252319 5` UTR CR43626 + chr3L 3252371 5` UTR CR43626 + chr3L 3252423 5` UTR CR43626 + chr3L_4_3250001 chr3L_3250001 RAL-441 1066 chr3L 3314116 3314166 chr3L 3314270 3314301 18 146 10.5 9.5 10.0 1.6 185 chr3L 3314116 intergenic ZnT63C +,Drsl2 + chr3L 3314208 intergenic Drsl2 +,ZnT63C + chr3L 3314301 intergenic Drsl2 +,ZnT63C + chr3L_18_3310001 chr3L_3310001 RAL-441 1067 chr3L 3312269 3312279 chr3L 3315531 3315580 7 3269 18.0 28.0 23.0 0.3 3311 chr3L 3312269 exon ZnT63C + chr3L 3313924 3` UTR ZnT63C + chr3L 3315580 intergenic Drsl4 +,Drsl3 + chr3L_7_3310001 chr3L_3310001 RAL-441 1068 chr3L 3315957 3315994 chr3L 3316078 3316115 6 121 4.5 1.5 3.0 1.5 158 chr3L 3315957 intergenic Drsl4 + chr3L 3316036 intergenic Drsl4 + chr3L 3316115 intergenic Drsl4 + chr3L_6_3315001 chr3L_3315001 RAL-441 1069 chr3L 3392977 3393030 chr3L 3393080 3393118 9 98 2.0 6.5 4.2 1.7 141 chr3L 3392977 intergenic not near genes chr3L 3393048 intergenic not near genes chr3L 3393118 intergenic not near genes chr3L_9_3390001 chr3L_3390001 RAL-441 1070 chr3L 3436273 3436304 chr3L 3436372 3436393 6 96 4.0 2.5 3.2 1.4 120 chr3L 3436273 intron eIF5B - chr3L 3436333 intron eIF5B - chr3L 3436393 intron eIF5B - chr3L_6_3435001 chr3L_3435001 RAL-441 1071 chr3L 3436306 3436311 chr3L 3436370 3436409 4 89 4.0 1.0 2.5 1.1 103 chr3L 3436306 intron eIF5B - chr3L 3436358 intron eIF5B - chr3L 3436409 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-441 1072 chr3L 3475066 3475102 chr3L 3475527 3475564 jockey 8 460 3.5 5.5 4.5 1.5 498 chr3L 3475066 intron CG42324 + chr3L 3475315 intron CG42324 + chr3L 3475564 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-441 1073 chr3L 3484393 3484446 chr3L 3484490 3484536 8 92 2.5 3.0 2.8 2.1 143 chr3L 3484393 intron,intron CG42324 +,CG43074 - chr3L 3484464 intron,exon CG42324 +,CG43074 - chr3L 3484536 intron,intron CG42324 +,CG43074 - chr3L_8_3480001 chr3L_3480001 RAL-441 1074 chr3L 3577718 3577766 chr3L 3577816 3577861 11 97 1.5 5.0 3.2 2.6 143 chr3L 3577718 intron Eip63E + chr3L 3577790 intron Eip63E + chr3L 3577861 intron Eip63E + chr3L_11_3575001 chr3L_3575001 RAL-441 1075 chr3L 3601279 3601301 chr3L 3606610 3606632 copia 7 5327 9.0 4.5 6.8 0.9 5353 chr3L 3601279 intron Eip63E + chr3L 3603956 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-441 1076 chr3L 3601303 3601328 chr3L 3606608 3606659 copia 9 5323 6.0 3.5 4.8 1.6 5356 chr3L 3601303 intron Eip63E + chr3L 3603981 intron Eip63E + chr3L 3606659 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-441 1077 chr3L 3640729 3640777 chr3L 3640863 3640911 15 133 5.0 4.0 4.5 2.7 182 chr3L 3640729 intron dar1 + chr3L 3640820 intron dar1 + chr3L 3640911 intron dar1 + chr3L_15_3640001 chr3L_3640001 RAL-441 1078 chr3L 3729406 3729445 chr3L 3730047 3730097 18 644 32.0 27.0 29.5 0.6 691 chr3L 3729406 intron CG32264 - chr3L 3729752 intron CG32264 - chr3L 3730097 intron CG32264 - chr3L_18_3725001 chr3L_3725001 RAL-441 1079 chr3L 3766721 3766748 chr3L 3766827 3766854 7 106 4.0 1.0 2.5 2.0 133 chr3L 3766721 intron CG32264 - chr3L 3766788 intron CG32264 - chr3L 3766854 intron CG32264 - chr3L_7_3765001 chr3L_3765001 RAL-441 1080 chr3L 3783259 3783282 chr3L 3783355 3783361 5 92 1.5 5.5 3.5 1.1 102 chr3L 3783259 intron CG32264 - chr3L 3783310 intron CG32264 - chr3L 3783361 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-441 1081 chr3L 3797236 3797260 chr3L 3797339 3797361 5 100 1.0 4.0 2.5 1.4 125 chr3L 3797236 intron CG32264 - chr3L 3797298 intron CG32264 - chr3L 3797361 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-441 1082 chr3L 3814869 3815068 chr3L 3814973 3815155 11 99 5.5 2.5 4.0 2.2 286 chr3L 3814869 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815012 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815155 intron,intron Scsalpha +,CR43932 - chr3L_11_3815001 chr3L_3815001 RAL-441 1083 chr3L 3833724 3833754 chr3L 3833984 3834015 pogo 6 260 5.5 2.0 3.8 1.2 291 chr3L 3833724 intron enc + chr3L 3833870 intron enc + chr3L 3834015 intron enc + chr3L_6_3830001 chr3L_3830001 RAL-441 1084 chr3L 3877453 3877468 chr3L 3877595 3877611 7 141 0.0 4.5 2.2 2.2 158 chr3L 3877453 intergenic not near genes chr3L 3877532 intergenic not near genes chr3L 3877611 intergenic not near genes chr3L_7_3875001 chr3L_3875001 RAL-441 1085 chr3L 4099462 4099489 chr3L 4099563 4099590 6 100 4.0 1.5 2.8 1.6 128 chr3L 4099462 intron CG14995 - chr3L 4099526 intron CG14995 - chr3L 4099590 intron CG14995 - chr3L_6_4095001 chr3L_4095001 RAL-441 1086 chr3L 4240079 4240121 chr3L 4240266 4240287 14 179 8.5 7.0 7.8 1.6 208 chr3L 4240079 3` UTR CR45738 - chr3L 4240183 3` UTR,5` UTR CR45738 -,CG14997 + chr3L 4240287 3` UTR,intron CR45738 -,CG14997 + chr3L_14_4240001 chr3L_4240001 RAL-441 1087 chr3L 4328739 4328765 chr3L 4336255 4336282 412 4 7515 2.5 4.5 3.5 0.9 7543 chr3L 4328739 intron Cip4 - chr3L 4332510 intron Cip4 - chr3L 4336282 exon Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-441 1088 chr3L 4342395 4342436 chr3L 4342491 4342520 8 91 1.0 4.0 2.5 2.3 125 chr3L 4342395 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342520 intron Cip4 - chr3L_8_4340001 chr3L_4340001 RAL-441 1089 chr3L 4438724 4438739 chr3L 4438826 4438845 5 104 5.0 2.5 3.8 1.0 121 chr3L 4438724 intergenic CG15021 + chr3L 4438784 intergenic CG15021 + chr3L 4438845 intergenic not near genes chr3L_5_4435001 chr3L_4435001 RAL-441 1090 chr3L 4441796 4441811 chr3L 4441903 4441921 6 108 6.5 8.0 7.2 0.7 125 chr3L 4441796 intergenic not near genes chr3L 4441858 intergenic not near genes chr3L 4441921 intergenic not near genes chr3L_6_4440001 chr3L_4440001 RAL-441 1091 chr3L 4441813 4441820 chr3L 4441895 4441929 4 95 4.5 6.5 5.5 0.6 116 chr3L 4441813 intergenic not near genes chr3L 4441871 intergenic not near genes chr3L 4441929 intergenic not near genes chr3L_4_4440001 chr3L_4440001 RAL-441 1092 chr3L 4516831 4516857 chr3L 4516928 4516953 6 96 0.0 3.0 1.5 2.4 122 chr3L 4516831 intron Tie - chr3L 4516892 intron Tie - chr3L 4516953 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-441 1093 chr3L 4624346 4624374 chr3L 4624448 4624448 6 96 3.0 4.5 3.8 1.2 102 chr3L 4624346 intron Src64B - chr3L 4624397 intron Src64B - chr3L 4624448 intron Src64B - chr3L_6_4620001 chr3L_4620001 RAL-441 1094 chr3L 4631621 4631655 chr3L 4631716 4631751 7 94 2.5 4.0 3.2 1.7 130 chr3L 4631621 intron axo - chr3L 4631686 intron axo - chr3L 4631751 intron axo - chr3L_7_4630001 chr3L_4630001 RAL-441 1095 chr3L 4713294 4713301 chr3L 4713390 4713394 6 95 10.5 0.5 5.5 0.9 100 chr3L 4713294 intron RhoGEF64C + chr3L 4713344 intron RhoGEF64C + chr3L 4713394 intron RhoGEF64C + chr3L_6_4710001 chr3L_4710001 RAL-441 1096 chr3L 4839522 4839551 chr3L 4839746 4839786 6 234 0.0 4.5 2.2 1.9 264 chr3L 4839522 intron CG13707 - chr3L 4839654 intron CG13707 - chr3L 4839786 exon CG13707 - chr3L_6_4835001 chr3L_4835001 RAL-441 1097 chr3L 4901118 4901159 chr3L 4907328 4907367 diver 10 6205 4.0 3.0 3.5 2.2 6249 chr3L 4901118 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907367 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-441 1098 chr3L 4925724 4925763 chr3L 4925821 4925860 11 94 3.0 2.5 2.8 2.9 136 chr3L 4925724 intergenic not near genes chr3L 4925792 intergenic not near genes chr3L 4925860 intergenic not near genes chr3L_11_4925001 chr3L_4925001 RAL-441 1099 chr3L 5045437 5045479 chr3L 5050238 5050273 Doc 6 4797 3.0 3.0 3.0 1.5 4836 chr3L 5045437 intron Con - chr3L 5047855 intron Con - chr3L 5050273 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-441 1100 chr3L 5089122 5089145 chr3L 5089220 5089234 5 96 0.0 1.5 0.8 2.8 112 chr3L 5089122 intergenic not near genes chr3L 5089178 intergenic not near genes chr3L 5089234 intergenic not near genes chr3L_5_5085001 chr3L_5085001 RAL-441 1101 chr3L 5103592 5103607 chr3L 5103692 5103703 5 98 4.0 0.0 2.0 1.7 111 chr3L 5103592 intergenic not near genes chr3L 5103648 intergenic not near genes chr3L 5103703 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-441 1102 chr3L 5104473 5104512 chr3L 5124627 5124665 9 20152 1.0 3.0 2.0 3.0 20192 chr3L 5104473 intergenic not near genes chr3L 5114569 intergenic not near genes chr3L 5124665 intergenic not near genes chr3L_9_5110001 chr3L_5110001 RAL-441 1103 chr3L 5261153 5261169 chr3L 5261252 5261262 5 97 5.0 3.5 4.2 1.0 109 chr3L 5261153 intron shep - chr3L 5261208 intron shep - chr3L 5261262 intron shep - chr3L_5_5260001 chr3L_5260001 RAL-441 1104 chr3L 5271157 5271188 chr3L 5271255 5271286 8 98 0.0 3.0 1.5 3.2 129 chr3L 5271157 intron shep - chr3L 5271222 intron shep - chr3L 5271286 intron shep - chr3L_8_5270001 chr3L_5270001 RAL-441 1105 chr3L 5353173 5353201 chr3L 5353350 5353399 8 194 4.0 6.5 5.2 1.3 226 chr3L 5353173 intron lama - chr3L 5353286 intron lama - chr3L 5353399 intron lama - chr3L_8_5350001 chr3L_5350001 RAL-441 1106 chr3L 5393458 5393466 chr3L 5393640 5393648 4 182 6.0 2.5 4.2 0.8 190 chr3L 5393458 intergenic not near genes chr3L 5393553 intergenic not near genes chr3L 5393648 intergenic not near genes chr3L_4_5390001 chr3L_5390001 RAL-441 1107 chr3L 5482946 5483088 chr3L 5483170 5483181 9 150 0.5 4.0 2.2 2.8 235 chr3L 5482946 exon CG4835 + chr3L 5483064 exon CG4835 + chr3L 5483181 exon CG4835 + chr3L_9_5480001 chr3L_5480001 RAL-441 1108 chr3L 5492953 5492970 chr3L 5493025 5493069 5 88 3.5 2.5 3.0 1.2 116 chr3L 5492953 intergenic CR44520 - chr3L 5493011 intergenic CR44520 - chr3L 5493069 intergenic CR44520 - chr3L_5_5490001 chr3L_5490001 RAL-441 1109 chr3L 5496014 5496038 chr3L 5496405 5496407 8 401 2.5 4.0 3.2 1.9 393 chr3L 5496014 intergenic not near genes chr3L 5496210 intergenic not near genes chr3L 5496407 intergenic not near genes chr3L_8_5495001 chr3L_5495001 RAL-441 1110 chr3L 5504543 5504567 chr3L 5504640 5504665 8 98 2.5 0.0 1.2 3.6 122 chr3L 5504543 intron CG34342 - chr3L 5504604 intron CG34342 - chr3L 5504665 intron CG34342 - chr3L_8_5500001 chr3L_5500001 RAL-441 1111 chr3L 5537724 5537757 chr3L 5538066 5538088 jockey 6 349 0.5 7.5 4.0 1.2 364 chr3L 5537724 intergenic not near genes chr3L 5537906 intergenic not near genes chr3L 5538088 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-441 1112 chr3L 5573397 5573439 chr3L 5573515 5573550 5 112 0.0 7.0 3.5 1.1 153 chr3L 5573397 intron Msr-110 - chr3L 5573474 intron Msr-110 - chr3L 5573550 intron Msr-110 - chr3L_5_5570001 chr3L_5570001 RAL-441 1113 chr3L 5581991 5582021 chr3L 5582086 5582099 5 92 3.5 0.0 1.8 1.8 108 chr3L 5581991 intergenic not near genes chr3L 5582045 intergenic not near genes chr3L 5582099 intergenic not near genes chr3L_5_5580001 chr3L_5580001 RAL-441 1114 chr3L 5677170 5677204 chr3L 5677265 5677279 16 94 0.5 7.0 3.8 3.3 109 chr3L 5677170 intron sif + chr3L 5677224 intron sif + chr3L 5677279 intron sif + chr3L_16_5675001 chr3L_5675001 RAL-441 1115 chr3L 5841407 5841429 chr3L 5841492 5841526 5 91 7.5 4.0 5.8 0.7 119 chr3L 5841407 intron vn - chr3L 5841466 intron vn - chr3L 5841526 intron vn - chr3L_5_5840001 chr3L_5840001 RAL-441 1116 chr3L 5866934 5866954 chr3L 5867008 5867035 5 84 3.0 4.0 3.5 1.1 101 chr3L 5866934 intergenic not near genes chr3L 5866984 intergenic not near genes chr3L 5867035 intergenic not near genes chr3L_5_5865001 chr3L_5865001 RAL-441 1117 chr3L 5908063 5908105 chr3L 5908163 5908205 7 100 0.5 1.5 1.0 3.5 142 chr3L 5908063 intron CG13288 + chr3L 5908134 intron CG13288 + chr3L 5908205 intron CG13288 + chr3L_7_5905001 chr3L_5905001 RAL-441 1118 chr3L 5917204 5917251 chr3L 5917494 5917541 9 288 3.5 2.5 3.0 2.2 337 chr3L 5917204 3` UTR CG13288 + chr3L 5917372 3` UTR CG13288 + chr3L 5917541 intergenic CG13288 +,CG10483 - chr3L_9_5915001 chr3L_5915001 RAL-441 1119 chr3L 5992575 5992613 chr3L 5992694 5992706 9 116 5.0 0.0 2.5 2.6 131 chr3L 5992575 intergenic not near genes chr3L 5992640 intergenic not near genes chr3L 5992706 intergenic not near genes chr3L_9_5990001 chr3L_5990001 RAL-441 1120 chr3L 5992693 5992730 chr3L 5993101 5993138 13 408 0.0 4.5 2.2 4.1 445 chr3L 5992693 intergenic not near genes chr3L 5992916 intergenic not near genes chr3L 5993138 intergenic not near genes chr3L_13_5990001 chr3L_5990001 RAL-441 1121 chr3L 6001663 6001711 chr3L 6004383 6004431 jockey 9 2720 4.0 1.0 2.5 2.6 2768 chr3L 6001663 intron PVRAP + chr3L 6003047 intron PVRAP + chr3L 6004431 intron PVRAP + chr3L_9_6000001 chr3L_6000001 RAL-441 1122 chr3L 6040346 6040394 chr3L 6042722 6042770 Doc 12 2376 1.5 4.5 3.0 3.0 2424 chr3L 6040346 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042770 intergenic not near genes chr3L_12_6040001 chr3L_6040001 RAL-441 1123 chr3L 6152072 6152086 chr3L 6152169 6152170 6 102 9.0 4.0 6.5 0.8 98 chr3L 6152072 3` UTR Acp65Aa - chr3L 6152121 3` UTR Acp65Aa - chr3L 6152170 3` UTR Acp65Aa - chr3L_6_6150001 chr3L_6150001 RAL-441 1124 chr3L 6155675 6155706 chr3L 6155781 6155811 5 105 3.5 0.5 2.0 1.7 136 chr3L 6155675 intergenic CR45421 - chr3L 6155743 intergenic not near genes chr3L 6155811 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-441 1125 chr3L 6219409 6219444 chr3L 6219512 6219546 8 95 5.0 5.0 5.0 1.3 137 chr3L 6219409 intergenic not near genes chr3L 6219478 intergenic not near genes chr3L 6219546 intergenic not near genes chr3L_8_6215001 chr3L_6215001 RAL-441 1126 chr3L 6220905 6220947 chr3L 6230073 6230104 roo 12 9165 2.5 4.5 3.5 2.7 9199 chr3L 6220905 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230104 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-441 1127 chr3L 6335008 6335042 chr3L 6335498 6335532 297 6 490 3.0 3.5 3.2 1.4 524 chr3L 6335008 intron CG13300 - chr3L 6335270 intron CG13300 - chr3L 6335532 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-441 1128 chr3L 6362375 6362394 chr3L 6362472 6362491 6 97 1.5 0.5 1.0 3.0 116 chr3L 6362375 intergenic not near genes chr3L 6362433 intergenic not near genes chr3L 6362491 intergenic not near genes chr3L_6_6360001 chr3L_6360001 RAL-441 1129 chr3L 6401261 6401282 chr3L 6401360 6401377 4 97 8.0 5.0 6.5 0.5 116 chr3L 6401261 intron CG42747 + chr3L 6401319 intron CG42747 + chr3L 6401377 intron CG42747 + chr3L_4_6400001 chr3L_6400001 RAL-441 1130 chr3L 6401287 6401307 chr3L 6401356 6401372 8 90 4.0 5.0 4.5 1.5 85 chr3L 6401287 intron CG42747 + chr3L 6401330 intron CG42747 + chr3L 6401372 intron CG42747 + chr3L_8_6400001 chr3L_6400001 RAL-441 1131 chr3L 6405640 6405682 chr3L 6432124 6432165 roo 7 26484 2.5 3.5 3.0 1.8 26525 chr3L 6405640 intron CG42747 + chr3L 6418902 intron CG42747 + chr3L 6432165 intron CG42747 + chr3L_7_6415001 chr3L_6415001 RAL-441 1132 chr3L 6561200 6561250 chr3L 6561425 6561474 13 219 2.0 3.5 2.8 3.4 274 chr3L 6561200 intron CG18769 + chr3L 6561337 intron CG18769 + chr3L 6561474 intron CG18769 + chr3L_13_6560001 chr3L_6560001 RAL-441 1133 chr3L 6562834 6562864 chr3L 6562934 6562935 9 94 2.0 2.0 2.0 3.0 101 chr3L 6562834 intron CG18769 + chr3L 6562884 intron CG18769 + chr3L 6562935 intron CG18769 + chr3L_9_6560001 chr3L_6560001 RAL-441 1134 chr3L 6582445 6582494 chr3L 6582566 6582615 8 121 4.0 4.0 4.0 1.6 170 chr3L 6582445 intron,intron CG18769 +,jv - chr3L 6582530 intron,intron CG18769 +,jv - chr3L 6582615 intron,intron CG18769 +,jv - chr3L_8_6580001 chr3L_6580001 RAL-441 1135 chr3L 6620592 6620613 chr3L 6621052 6621052 Rt1c 5 456 5.5 11.5 8.5 0.5 460 chr3L 6620592 intergenic not near genes chr3L 6620822 intergenic not near genes chr3L 6621052 intergenic not near genes chr3L_5_6620001 chr3L_6620001 RAL-441 1136 chr3L 6652062 6652107 chr3L 6652160 6652205 17 93 3.0 7.0 5.0 2.8 143 chr3L 6652062 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652205 intergenic not near genes chr3L_17_6650001 chr3L_6650001 RAL-441 1137 chr3L 6667461 6667511 chr3L 6667560 6667602 22 91 2.0 2.5 2.2 6.9 141 chr3L 6667461 exon CG32395 - chr3L 6667532 exon CG32395 - chr3L 6667602 exon CG32395 - chr3L_22_6665001 chr3L_6665001 RAL-441 1138 chr3L 6781103 6781145 chr3L 6783136 6783175 Doc 6 2032 2.5 0.0 1.2 2.7 2072 chr3L 6781103 intergenic not near genes chr3L 6782139 intergenic not near genes chr3L 6783175 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-441 1139 chr3L 6855927 6855950 chr3L 6860726 6860751 Doc 6 4803 3.0 4.5 3.8 1.2 4824 chr3L 6855927 intergenic not near genes chr3L 6858339 intergenic not near genes chr3L 6860751 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-441 1140 chr3L 6875218 6875250 chr3L 6875315 6875347 4 96 2.5 2.0 2.2 1.2 129 chr3L 6875218 intergenic not near genes chr3L 6875282 intergenic not near genes chr3L 6875347 intergenic not near genes chr3L_4_6875001 chr3L_6875001 RAL-441 1141 chr3L 6887497 6887523 chr3L 6895007 6895034 roo 7 7512 4.0 0.0 2.0 2.3 7537 chr3L 6887497 intergenic not near genes chr3L 6891266 intergenic not near genes chr3L 6895034 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-441 1142 chr3L 6942051 6942062 chr3L 6942168 6942181 5 118 10.0 5.5 7.8 0.6 130 chr3L 6942051 intergenic not near genes chr3L 6942116 intergenic not near genes chr3L 6942181 intergenic not near genes chr3L_5_6940001 chr3L_6940001 RAL-441 1143 chr3L 6942066 6942079 chr3L 6942163 6942198 7 116 8.0 4.5 6.2 1.0 132 chr3L 6942066 intergenic not near genes chr3L 6942132 intergenic not near genes chr3L 6942198 intergenic not near genes chr3L_7_6940001 chr3L_6940001 RAL-441 1144 chr3L 7027667 7027674 chr3L 7027727 7027738 7 74 5.0 4.5 4.8 1.2 71 chr3L 7027667 intron Mp + chr3L 7027702 intron Mp + chr3L 7027738 intron Mp + chr3L_7_7025001 chr3L_7025001 RAL-441 1145 chr3L 7041903 7041924 chr3L 7042000 7042021 11 94 4.5 3.5 4.0 2.2 118 chr3L 7041903 intron Mp + chr3L 7041962 intron Mp + chr3L 7042021 intron Mp + chr3L_11_7040001 chr3L_7040001 RAL-441 1146 chr3L 7090912 7090946 chr3L 7091015 7091047 5 102 2.5 3.5 3.0 1.2 135 chr3L 7090912 intergenic not near genes chr3L 7090980 intergenic not near genes chr3L 7091047 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-441 1147 chr3L 7091512 7091556 chr3L 7091609 7091638 6 92 1.0 4.5 2.8 1.6 126 chr3L 7091512 intergenic not near genes chr3L 7091575 intergenic not near genes chr3L 7091638 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-441 1148 chr3L 7277094 7277132 chr3L 7277216 7277237 10 118 4.0 3.0 3.5 2.2 143 chr3L 7277094 exon unc-13-4A - chr3L 7277166 intron unc-13-4A - chr3L 7277237 intron unc-13-4A - chr3L_10_7275001 chr3L_7275001 RAL-441 1149 chr3L 7285437 7285478 chr3L 7285526 7285575 20 96 4.0 3.0 3.5 4.4 138 chr3L 7285437 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285575 intron unc-13-4A - chr3L_20_7285001 chr3L_7285001 RAL-441 1150 chr3L 7318196 7318219 chr3L 7318281 7318322 7 103 4.5 2.0 3.2 1.7 126 chr3L 7318196 intergenic not near genes chr3L 7318259 intergenic not near genes chr3L 7318322 intergenic not near genes chr3L_7_7315001 chr3L_7315001 RAL-441 1151 chr3L 7358288 7358326 chr3L 7359578 7359588 11 1287 23.5 22.5 23.0 0.5 1300 chr3L 7358288 exon pst - chr3L 7358938 exon pst - chr3L 7359588 exon pst - chr3L_11_7355001 chr3L_7355001 RAL-441 1152 chr3L 7404496 7404537 chr3L 7404731 7404777 8 234 3.0 5.0 4.0 1.6 281 chr3L 7404496 intergenic CG8560 - chr3L 7404636 intergenic CG8560 - chr3L 7404777 intergenic not near genes chr3L_8_7400001 chr3L_7400001 RAL-441 1153 chr3L 7444005 7444041 chr3L 7444121 7444140 8 114 4.0 0.0 2.0 2.7 135 chr3L 7444005 intron CG42458 + chr3L 7444072 intron CG42458 + chr3L 7444140 intron CG42458 + chr3L_8_7440001 chr3L_7440001 RAL-441 1154 chr3L 7498750 7498781 chr3L 7503546 7503578 F-element 6 4796 4.5 6.0 5.2 1.0 4828 chr3L 7498750 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503578 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-441 1155 chr3L 7591142 7591170 chr3L 7591238 7591242 6 84 4.0 2.0 3.0 1.5 100 chr3L 7591142 intergenic CG7716 - chr3L 7591192 intergenic CG7716 - chr3L 7591242 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-441 1156 chr3L 7711813 7711851 chr3L 7711904 7711936 7 92 1.0 3.5 2.2 2.2 123 chr3L 7711813 intron,intron CG32373 +,Ank2 - chr3L 7711874 intron,intron CG32373 +,Ank2 - chr3L 7711936 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-441 1157 chr3L 7732432 7732454 chr3L 7732541 7732559 5 100 6.5 6.0 6.2 0.7 127 chr3L 7732432 intron CG32373 + chr3L 7732496 intron CG32373 + chr3L 7732559 intron CG32373 + chr3L_5_7730001 chr3L_7730001 RAL-441 1158 chr3L 7732456 7732473 chr3L 7732532 7732582 10 96 3.5 4.5 4.0 2.0 126 chr3L 7732456 intron CG32373 + chr3L 7732519 intron CG32373 + chr3L 7732582 intron CG32373 + chr3L_10_7730001 chr3L_7730001 RAL-441 1159 chr3L 7793703 7793734 chr3L 7800775 7800801 297 9 7071 6.5 6.0 6.2 1.2 7098 chr3L 7793703 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800801 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-441 1160 chr3L 7886502 7886534 chr3L 7889040 7889069 Stalker4 8 2533 3.0 1.5 2.2 2.5 2567 chr3L 7886502 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889069 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-441 1161 chr3L 7886537 7886546 chr3L 7889039 7889084 Stalker4 6 2532 2.0 1.5 1.8 2.1 2547 chr3L 7886537 intron CG32365 + chr3L 7887810 intron CG32365 + chr3L 7889084 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-441 1162 chr3L 7916813 7916853 chr3L 7926003 7926044 roo 10 9191 2.0 1.5 1.8 3.6 9231 chr3L 7916813 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926044 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-441 1163 chr3L 7985380 7985395 chr3L 7987711 7987744 NOF 8 2346 4.0 6.0 5.0 1.3 2364 chr3L 7985380 intron nmo + chr3L 7986562 intron nmo + chr3L 7987744 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-441 1164 chr3L 8041541 8041565 chr3L 8041631 8041663 4 95 5.5 4.5 5.0 0.7 122 chr3L 8041541 intron nmo + chr3L 8041602 intron nmo + chr3L 8041663 intron nmo + chr3L_4_8040001 chr3L_8040001 RAL-441 1165 chr3L 8157379 8157414 chr3L 8157481 8157517 7 100 1.0 5.0 3.0 1.8 138 chr3L 8157379 intron CG42445 - chr3L 8157448 intron CG42445 - chr3L 8157517 intron CG42445 - chr3L_7_8155001 chr3L_8155001 RAL-441 1166 chr3L 8165968 8165981 chr3L 8166068 8166079 4 102 5.0 2.5 3.8 0.8 111 chr3L 8165968 intergenic CG13675 - chr3L 8166024 intergenic not near genes chr3L 8166079 intergenic not near genes chr3L_4_8165001 chr3L_8165001 RAL-441 1167 chr3L 8165986 8165994 chr3L 8166063 8166098 6 99 3.5 2.5 3.0 1.5 112 chr3L 8165986 intergenic CG13675 - chr3L 8166042 intergenic not near genes chr3L 8166098 intergenic not near genes chr3L_6_8165001 chr3L_8165001 RAL-441 1168 chr3L 8210781 8210832 chr3L 8210916 8210917 8 127 2.0 8.0 5.0 1.3 136 chr3L 8210781 intergenic CG32364 - chr3L 8210849 intergenic CG32364 - chr3L 8210917 intergenic CG32364 - chr3L_8_8210001 chr3L_8210001 RAL-441 1169 chr3L 8243806 8243842 chr3L 8243909 8243933 7 101 4.0 7.5 5.8 1.0 127 chr3L 8243806 intron Dscam4 + chr3L 8243870 intron Dscam4 + chr3L 8243933 intron Dscam4 + chr3L_7_8240001 chr3L_8240001 RAL-441 1170 chr3L 8274825 8274841 chr3L 8274959 8274960 4 130 2.0 0.0 1.0 2.0 135 chr3L 8274825 intron Dscam4 + chr3L 8274892 intron Dscam4 + chr3L 8274960 intron Dscam4 + chr3L_4_8270001 chr3L_8270001 RAL-441 1171 chr3L 8314757 8314769 chr3L 8314870 8314882 4 112 0.0 5.5 2.8 1.1 125 chr3L 8314757 intron CG7185 - chr3L 8314820 intron CG7185 - chr3L 8314882 intron CG7185 - chr3L_4_8310001 chr3L_8310001 RAL-441 1172 chr3L 8395832 8395858 chr3L 8395929 8395946 6 101 5.5 4.0 4.8 1.0 114 chr3L 8395832 intergenic CG7120 + chr3L 8395889 intergenic CG7120 + chr3L 8395946 intergenic CG7120 + chr3L_6_8395001 chr3L_8395001 RAL-441 1173 chr3L 8443548 8443582 chr3L 8443649 8443684 5 102 2.0 2.5 2.2 1.6 136 chr3L 8443548 3` UTR CG6983 - chr3L 8443616 3` UTR CG6983 - chr3L 8443684 3` UTR CG6983 - chr3L_5_8440001 chr3L_8440001 RAL-441 1174 chr3L 8456458 8456488 chr3L 8456569 8456598 11 110 5.0 10.0 7.5 1.3 140 chr3L 8456458 intron Gug + chr3L 8456528 intron Gug + chr3L 8456598 intron Gug + chr3L_11_8455001 chr3L_8455001 RAL-441 1175 chr3L 8459190 8459224 chr3L 8459287 8459321 6 96 4.5 3.5 4.0 1.2 131 chr3L 8459190 intron Gug + chr3L 8459256 intron Gug + chr3L 8459321 intron Gug + chr3L_6_8455001 chr3L_8455001 RAL-441 1176 chr3L 8498307 8498321 chr3L 8505767 8505808 blood 7 7476 2.0 2.5 2.2 2.2 7501 chr3L 8498307 intron CG43163 - chr3L 8502058 intron CG43163 - chr3L 8505808 intron CG43163 - chr3L_7_8500001 chr3L_8500001 RAL-441 1177 chr3L 8619495 8619533 chr3L 8619604 8619642 6 108 2.5 1.5 2.0 2.0 147 chr3L 8619495 intergenic S-Lap1 +,S-Lap2 + chr3L 8619568 intergenic S-Lap1 +,S-Lap2 + chr3L 8619642 intergenic S-Lap1 +,S-Lap2 + chr3L_6_8615001 chr3L_8615001 RAL-441 1178 chr3L 8719096 8719134 chr3L 8719199 8719236 11 100 5.5 3.5 4.5 2.0 140 chr3L 8719096 3` UTR SrpRbeta - chr3L 8719166 3` UTR SrpRbeta - chr3L 8719236 3` UTR SrpRbeta - chr3L_11_8715001 chr3L_8715001 RAL-441 1179 chr3L 8719135 8719142 chr3L 8719198 8719244 5 88 4.0 3.5 3.8 1.0 109 chr3L 8719135 3` UTR SrpRbeta - chr3L 8719190 3` UTR SrpRbeta - chr3L 8719244 3` UTR SrpRbeta - chr3L_5_8715001 chr3L_8715001 RAL-441 1180 chr3L 8772035 8772059 chr3L 8772132 8772157 9 98 9.5 4.5 7.0 1.1 122 chr3L 8772035 intron Fhos + chr3L 8772096 intron Fhos + chr3L 8772157 intron Fhos + chr3L_9_8770001 chr3L_8770001 RAL-441 1181 chr3L 8772060 8772073 chr3L 8772131 8772149 4 86 6.0 4.5 5.2 0.6 89 chr3L 8772060 intron Fhos + chr3L 8772104 intron Fhos + chr3L 8772149 intron Fhos + chr3L_4_8770001 chr3L_8770001 RAL-441 1182 chr3L 8791257 8791271 chr3L 8796697 8796697 I-element 8 5437 3.5 0.0 1.8 2.9 5440 chr3L 8791257 exon Fhos + chr3L 8793977 intron Fhos + chr3L 8796697 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-441 1183 chr3L 8791286 8791308 chr3L 8796694 8796747 I-element 4 5424 3.5 0.0 1.8 1.4 5461 chr3L 8791286 exon Fhos + chr3L 8794016 intron Fhos + chr3L 8796747 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-441 1184 chr3L 8832392 8832434 chr3L 8832504 8832518 15 110 4.5 9.5 7.0 1.9 126 chr3L 8832392 intron dally + chr3L 8832455 intron dally + chr3L 8832518 intron dally + chr3L_15_8830001 chr3L_8830001 RAL-441 1185 chr3L 8928253 8928284 chr3L 8928349 8928380 4 96 1.5 2.0 1.8 1.4 127 chr3L 8928253 intron Tsp66E + chr3L 8928316 intron Tsp66E + chr3L 8928380 intron Tsp66E + chr3L_4_8925001 chr3L_8925001 RAL-441 1186 chr3L 8928286 8928293 chr3L 8928346 8928389 5 89 1.0 2.0 1.5 2.0 103 chr3L 8928286 intron Tsp66E + chr3L 8928338 intron Tsp66E + chr3L 8928389 intron Tsp66E + chr3L_5_8925001 chr3L_8925001 RAL-441 1187 chr3L 8949495 8949510 chr3L 8949596 8949611 4 100 0.0 6.0 3.0 1.0 116 chr3L 8949495 intron,intron CG43783 -,orb2 - chr3L 8949553 intron,intron CG43783 -,orb2 - chr3L 8949611 intron,intron CG43783 -,orb2 - chr3L_4_8945001 chr3L_8945001 RAL-441 1188 chr3L 9003934 9003944 chr3L 9004038 9004049 5 105 4.5 4.0 4.2 1.0 115 chr3L 9003934 intergenic not near genes chr3L 9003992 intergenic not near genes chr3L 9004049 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-441 1189 chr3L 9003947 9003974 chr3L 9004033 9004079 5 100 3.0 4.0 3.5 1.1 132 chr3L 9003947 intergenic not near genes chr3L 9004013 intergenic not near genes chr3L 9004079 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-441 1190 chr3L 9076907 9076930 chr3L 9084487 9084509 412 7 7579 8.5 5.0 6.8 0.9 7602 chr3L 9076907 exon Tequila + chr3L 9080708 intron Tequila + chr3L 9084509 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-441 1191 chr3L 9076931 9076954 chr3L 9084485 9084531 412 11 7571 5.0 4.5 4.8 1.9 7600 chr3L 9076931 exon Tequila + chr3L 9080731 intron Tequila + chr3L 9084531 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-441 1192 chr3L 9118337 9118344 chr3L 9118435 9118443 4 99 5.5 8.0 6.8 0.5 106 chr3L 9118337 intron bol - chr3L 9118390 intron bol - chr3L 9118443 intron bol - chr3L_4_9115001 chr3L_9115001 RAL-441 1193 chr3L 9125778 9125797 chr3L 9125875 9125894 6 97 1.5 2.5 2.0 2.0 116 chr3L 9125778 intron bol - chr3L 9125836 intron bol - chr3L 9125894 intron bol - chr3L_6_9125001 chr3L_9125001 RAL-441 1194 chr3L 9129194 9129222 chr3L 9129293 9129319 5 99 1.5 4.5 3.0 1.2 125 chr3L 9129194 intron bol - chr3L 9129256 intron bol - chr3L 9129319 intron bol - chr3L_5_9125001 chr3L_9125001 RAL-441 1195 chr3L 9130538 9130579 chr3L 9134319 9134360 412 13 3769 5.5 1.5 3.5 2.9 3822 chr3L 9130538 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134360 intergenic Dhpr + chr3L_13_9130001 chr3L_9130001 RAL-441 1196 chr3L 9219256 9219268 chr3L 9219923 9219940 jockey 4 680 4.0 3.0 3.5 0.9 684 chr3L 9219256 intergenic not near genes chr3L 9219598 intergenic not near genes chr3L 9219940 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-441 1197 chr3L 9241132 9241149 chr3L 9241232 9241234 5 96 1.0 6.0 3.5 1.1 102 chr3L 9241132 intergenic not near genes chr3L 9241183 intergenic not near genes chr3L 9241234 intergenic not near genes chr3L_5_9240001 chr3L_9240001 RAL-441 1198 chr3L 9270596 9270644 chr3L 9278371 9278392 roo 4 7768 1.0 2.0 1.5 1.6 7796 chr3L 9270596 intron GluRIB + chr3L 9274494 intron GluRIB + chr3L 9278392 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-441 1199 chr3L 9286235 9286265 chr3L 9286747 9286761 6 508 4.0 1.0 2.5 1.7 526 chr3L 9286235 3` UTR GluRIB + chr3L 9286498 3` UTR GluRIB + chr3L 9286761 3` UTR GluRIB + chr3L_6_9285001 chr3L_9285001 RAL-441 1200 chr3L 9443517 9443543 chr3L 9445300 9445331 S-element 15 1797 3.5 7.0 5.2 2.4 1814 chr3L 9443517 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_15_9440001 chr3L_9440001 RAL-441 1201 chr3L 9498190 9498227 chr3L 9498287 9498324 8 95 2.0 1.5 1.8 2.9 134 chr3L 9498190 intron path - chr3L 9498257 intron path - chr3L 9498324 intron path - chr3L_8_9495001 chr3L_9495001 RAL-441 1202 chr3L 9501683 9501725 chr3L 9502188 9502227 roo 12 501 3.5 6.0 4.8 2.1 544 chr3L 9501683 intron path - chr3L 9501955 intron path - chr3L 9502227 intron path - chr3L_12_9500001 chr3L_9500001 RAL-441 1203 chr3L 9507798 9507809 chr3L 9507898 9507908 5 100 8.5 2.0 5.2 0.8 110 chr3L 9507798 exon CG3408 - chr3L 9507853 exon CG3408 - chr3L 9507908 exon CG3408 - chr3L_5_9505001 chr3L_9505001 RAL-441 1204 chr3L 9507812 9507822 chr3L 9507894 9507922 6 91 7.0 1.0 4.0 1.2 110 chr3L 9507812 exon CG3408 - chr3L 9507867 exon CG3408 - chr3L 9507922 exon CG3408 - chr3L_6_9505001 chr3L_9505001 RAL-441 1205 chr3L 9507825 9507843 chr3L 9507891 9507925 5 87 5.0 1.0 3.0 1.2 100 chr3L 9507825 exon CG3408 - chr3L 9507875 exon CG3408 - chr3L 9507925 exon CG3408 - chr3L_5_9505001 chr3L_9505001 RAL-441 1206 chr3L 9558986 9559004 chr3L 9559052 9559103 6 84 5.0 3.5 4.2 1.2 117 chr3L 9558986 intron CG42673 + chr3L 9559044 intron CG42673 + chr3L 9559103 intron CG42673 + chr3L_6_9555001 chr3L_9555001 RAL-441 1207 chr3L 9571881 9571925 chr3L 9572248 9572293 jockey 11 367 3.5 0.5 2.0 3.7 412 chr3L 9571881 intron CG42673 + chr3L 9572087 intron CG42673 + chr3L 9572293 intron CG42673 + chr3L_11_9570001 chr3L_9570001 RAL-441 1208 chr3L 9572274 9572297 chr3L 9572381 9572405 4 108 0.5 5.0 2.8 1.1 131 chr3L 9572274 intron CG42673 + chr3L 9572340 intron CG42673 + chr3L 9572405 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-441 1209 chr3L 9575903 9575919 chr3L 9580991 9581016 jockey 4 5090 10.5 6.5 8.5 0.4 5113 chr3L 9575903 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-441 1210 chr3L 9575921 9575948 chr3L 9580985 9581015 jockey 8 5074 7.0 4.5 5.8 1.2 5094 chr3L 9575921 intron CG42673 + chr3L 9578468 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-441 1211 chr3L 9637832 9637879 chr3L 9637934 9637979 25 99 1.0 3.5 2.2 7.8 147 chr3L 9637832 exon fry - chr3L 9637906 intron fry - chr3L 9637979 intron fry - chr3L_25_9635001 chr3L_9635001 RAL-441 1212 chr3L 9639009 9639060 chr3L 9639114 9639164 9 105 0.0 1.0 0.5 6.0 155 chr3L 9639009 intron,3` UTR fry -,CG8329 + chr3L 9639086 intron fry - chr3L 9639164 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-441 1213 chr3L 9646473 9646500 chr3L 9646592 9646637 5 131 3.5 0.0 1.8 1.8 164 chr3L 9646473 intron,intron fry -,CG33696 + chr3L 9646555 intron,intron fry -,CG33696 + chr3L 9646637 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-441 1214 chr3L 9733338 9733384 chr3L 9733437 9733483 7 95 4.0 5.0 4.5 1.3 145 chr3L 9733338 exon CG6749 - chr3L 9733410 intron CG6749 - chr3L 9733483 intron CG6749 - chr3L_7_9730001 chr3L_9730001 RAL-441 1215 chr3L 9775347 9775397 chr3L 9775726 9775774 14 378 0.5 3.5 2.0 4.7 427 chr3L 9775347 intron CG8177 + chr3L 9775560 intron CG8177 + chr3L 9775774 intron CG8177 + chr3L_14_9775001 chr3L_9775001 RAL-441 1216 chr3L 9809714 9809740 chr3L 9809803 9809832 4 91 5.0 3.5 4.2 0.8 118 chr3L 9809714 intergenic not near genes chr3L 9809773 intergenic not near genes chr3L 9809832 intergenic not near genes chr3L_4_9805001 chr3L_9805001 RAL-441 1217 chr3L 9875533 9875578 chr3L 9875670 9875717 16 138 2.0 4.0 3.0 4.0 184 chr3L 9875533 intergenic CR45406 + chr3L 9875625 intergenic CR45406 + chr3L 9875717 intergenic CR45406 + chr3L_16_9875001 chr3L_9875001 RAL-441 1218 chr3L 9918767 9918821 chr3L 9918998 9919018 14 215 4.5 3.5 4.0 2.8 251 chr3L 9918767 intron CG34356 + chr3L 9918892 intron CG34356 + chr3L 9919018 intron CG34356 + chr3L_14_9915001 chr3L_9915001 RAL-441 1219 chr3L 9929652 9929701 chr3L 9938451 9938465 roo 14 8793 5.0 4.0 4.5 2.5 8813 chr3L 9929652 intron CG34356 + chr3L 9934058 intron CG34356 + chr3L 9938465 intron CG34356 + chr3L_14_9930001 chr3L_9930001 RAL-441 1220 chr3L 10003145 10003181 chr3L 10003262 10003297 6 117 1.5 2.5 2.0 2.0 152 chr3L 10003145 intron dpr6 + chr3L 10003221 intron dpr6 + chr3L 10003297 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-441 1221 chr3L 10007174 10007204 chr3L 10007297 10007327 4 122 3.5 6.5 5.0 0.7 153 chr3L 10007174 intron dpr6 + chr3L 10007250 intron dpr6 + chr3L 10007327 intron dpr6 + chr3L_4_10005001 chr3L_10005001 RAL-441 1222 chr3L 10103870 10103876 chr3L 10103946 10103956 5 84 1.5 2.0 1.8 1.8 86 chr3L 10103870 intron dpr6 + chr3L 10103913 intron dpr6 + chr3L 10103956 intron dpr6 + chr3L_5_10100001 chr3L_10100001 RAL-441 1223 chr3L 10165642 10165669 chr3L 10165738 10165738 4 85 3.5 0.0 1.8 1.4 96 chr3L 10165642 intron dpr10 - chr3L 10165690 intron dpr10 - chr3L 10165738 intron dpr10 - chr3L_4_10165001 chr3L_10165001 RAL-441 1224 chr3L 10204058 10204093 chr3L 10204218 10204253 9 160 1.0 1.0 1.0 4.5 195 chr3L 10204058 intergenic not near genes chr3L 10204156 intergenic not near genes chr3L 10204253 intergenic not near genes chr3L_9_10200001 chr3L_10200001 RAL-441 1225 chr3L 10222722 10222777 chr3L 10222820 10222863 5 91 1.5 2.0 1.8 1.8 141 chr3L 10222722 intron scramb1 - chr3L 10222792 intron scramb1 - chr3L 10222863 intron scramb1 - chr3L_5_10220001 chr3L_10220001 RAL-441 1226 chr3L 10250317 10250353 chr3L 10250423 10250434 8 99 1.5 2.5 2.0 2.7 117 chr3L 10250317 intergenic not near genes chr3L 10250376 intergenic not near genes chr3L 10250434 intergenic not near genes chr3L_8_10250001 chr3L_10250001 RAL-441 1227 chr3L 10255364 10255406 chr3L 10255482 10255487 8 112 0.0 2.5 1.2 3.6 123 chr3L 10255364 intergenic not near genes chr3L 10255426 intergenic not near genes chr3L 10255487 intergenic not near genes chr3L_8_10255001 chr3L_10255001 RAL-441 1228 chr3L 10308723 10308771 chr3L 10308817 10308861 19 94 3.0 4.5 3.8 4.0 138 chr3L 10308723 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308861 intergenic not near genes chr3L_19_10305001 chr3L_10305001 RAL-441 1229 chr3L 10348636 10348674 chr3L 10348773 10348811 15 137 2.0 0.0 1.0 7.5 175 chr3L 10348636 intron CR44327 + chr3L 10348724 intron CR44327 + chr3L 10348811 intron CR44327 + chr3L_15_10345001 chr3L_10345001 RAL-441 1230 chr3L 10362381 10362407 chr3L 10362475 10362504 6 96 2.5 6.5 4.5 1.1 123 chr3L 10362381 5` UTR CR44327 + chr3L 10362442 5` UTR CR44327 + chr3L 10362504 5` UTR CR44327 + chr3L_6_10360001 chr3L_10360001 RAL-441 1231 chr3L 10386377 10386393 chr3L 10386469 10386486 5 95 2.0 5.5 3.8 1.0 109 chr3L 10386377 intergenic CR45245 + chr3L 10386432 intergenic CR45245 + chr3L 10386486 5` UTR CR45245 + chr3L_5_10385001 chr3L_10385001 RAL-441 1232 chr3L 10386396 10386399 chr3L 10386464 10386474 4 84 1.5 3.5 2.5 1.1 78 chr3L 10386396 intergenic CR45245 + chr3L 10386435 intergenic CR45245 + chr3L 10386474 5` UTR CR45245 + chr3L_4_10385001 chr3L_10385001 RAL-441 1233 chr3L 10469913 10469963 chr3L 10470009 10470059 11 95 1.0 1.5 1.2 5.0 146 chr3L 10469913 intergenic not near genes chr3L 10469986 intergenic not near genes chr3L 10470059 intergenic not near genes chr3L_11_10465001 chr3L_10465001 RAL-441 1234 chr3L 10505628 10505664 chr3L 10505717 10505760 5 94 2.0 3.0 2.5 1.4 132 chr3L 10505628 intron A2bp1 + chr3L 10505694 intron A2bp1 + chr3L 10505760 intron A2bp1 + chr3L_5_10505001 chr3L_10505001 RAL-441 1235 chr3L 10537214 10537252 chr3L 10537310 10537348 7 95 0.5 1.5 1.0 3.5 134 chr3L 10537214 intron A2bp1 + chr3L 10537281 intron A2bp1 + chr3L 10537348 intron A2bp1 + chr3L_7_10535001 chr3L_10535001 RAL-441 1236 chr3L 10584267 10584302 chr3L 10584369 10584407 9 106 0.5 2.0 1.2 4.1 140 chr3L 10584267 intron A2bp1 + chr3L 10584337 intron A2bp1 + chr3L 10584407 intron A2bp1 + chr3L_9_10580001 chr3L_10580001 RAL-441 1237 chr3L 10600435 10600467 chr3L 10600538 10600567 4 96 3.5 2.5 3.0 1.0 132 chr3L 10600435 intergenic not near genes chr3L 10600501 intergenic not near genes chr3L 10600567 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-441 1238 chr3L 10621825 10621867 chr3L 10621932 10621974 8 107 4.5 1.5 3.0 2.0 149 chr3L 10621825 intergenic not near genes chr3L 10621900 intergenic not near genes chr3L 10621974 intergenic not near genes chr3L_8_10620001 chr3L_10620001 RAL-441 1239 chr3L 10653335 10653358 chr3L 10653437 10653463 7 104 3.5 4.0 3.8 1.5 128 chr3L 10653335 intron CG32066 - chr3L 10653399 intron CG32066 - chr3L 10653463 intron CG32066 - chr3L_7_10650001 chr3L_10650001 RAL-441 1240 chr3L 10654113 10654143 chr3L 10654212 10654229 6 97 3.5 1.5 2.5 1.7 116 chr3L 10654113 intron CG32066 - chr3L 10654171 intron CG32066 - chr3L 10654229 intron CG32066 - chr3L_6_10650001 chr3L_10650001 RAL-441 1241 chr3L 10654951 10655002 chr3L 10655051 10655080 11 82 2.5 2.5 2.5 3.1 129 chr3L 10654951 intron CG32066 - chr3L 10655016 intron CG32066 - chr3L 10655080 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-441 1242 chr3L 10658093 10658207 chr3L 10658161 10658349 9 125 0.0 0.0 0.0 9.0 256 chr3L 10658093 intron CG32066 - chr3L 10658221 intron CG32066 - chr3L 10658349 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-441 1243 chr3L 10712271 10712308 chr3L 10712532 10712573 4 258 3.5 0.5 2.0 1.3 302 chr3L 10712271 intergenic not near genes chr3L 10712422 intergenic not near genes chr3L 10712573 intergenic not near genes chr3L_4_10710001 chr3L_10710001 RAL-441 1244 chr3L 10721986 10722010 chr3L 10722071 10722076 9 92 3.0 0.0 1.5 3.6 90 chr3L 10721986 intergenic not near genes chr3L 10722031 intergenic not near genes chr3L 10722076 intergenic not near genes chr3L_9_10720001 chr3L_10720001 RAL-441 1245 chr3L 10762832 10762862 chr3L 10762914 10762926 6 79 1.5 2.0 1.8 2.1 94 chr3L 10762832 intergenic not near genes chr3L 10762879 intergenic not near genes chr3L 10762926 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-441 1246 chr3L 10769000 10769053 chr3L 10769115 10769165 12 106 4.5 3.0 3.8 2.5 165 chr3L 10769000 intergenic not near genes chr3L 10769082 intergenic not near genes chr3L 10769165 intergenic not near genes chr3L_12_10765001 chr3L_10765001 RAL-441 1247 chr3L 11087046 11087090 chr3L 11088850 11088893 S-element 8 1801 1.5 3.0 2.2 2.5 1847 chr3L 11087046 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088893 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-441 1248 chr3L 11127918 11127946 chr3L 11128039 11128069 4 122 2.5 2.5 2.5 1.1 151 chr3L 11127918 intron CG42575 + chr3L 11127994 intron CG42575 + chr3L 11128069 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-441 1249 chr3L 11135508 11135802 chr3L 11135758 11135907 5 134 0.5 0.0 0.2 4.2 399 chr3L 11135508 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135907 intergenic CG32082 +,CG14143 + chr3L_5_11135001 chr3L_11135001 RAL-441 1250 chr3L 11145535 11145556 chr3L 11145645 11145666 11 107 0.0 6.0 3.0 2.8 131 chr3L 11145535 intron CG32082 + chr3L 11145600 intron CG32082 + chr3L 11145666 intron CG32082 + chr3L_11_11145001 chr3L_11145001 RAL-441 1251 chr3L 11157810 11157856 chr3L 11157904 11157952 10 94 3.5 2.5 3.0 2.5 142 chr3L 11157810 intron CG32082 + chr3L 11157881 intron CG32082 + chr3L 11157952 intron CG32082 + chr3L_10_11155001 chr3L_11155001 RAL-441 1252 chr3L 11241765 11241790 chr3L 11241867 11241891 5 102 1.5 0.5 1.0 2.5 126 chr3L 11241765 intergenic not near genes chr3L 11241828 intergenic not near genes chr3L 11241891 intergenic not near genes chr3L_5_11240001 chr3L_11240001 RAL-441 1253 chr3L 11249839 11249893 chr3L 11249942 11249953 8 97 1.5 1.5 1.5 3.2 114 chr3L 11249839 5` UTR CR44717 + chr3L 11249896 5` UTR CR44717 + chr3L 11249953 5` UTR CR44717 + chr3L_8_11245001 chr3L_11245001 RAL-441 1254 chr3L 11264461 11264487 chr3L 11271416 11271449 17.6 7 6967 6.0 1.5 3.8 1.5 6988 chr3L 11264461 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271449 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-441 1255 chr3L 11274067 11274090 chr3L 11274216 11274239 10 148 1.5 2.0 1.8 3.6 172 chr3L 11274067 3` UTR CR44720 - chr3L 11274153 3` UTR CR44720 - chr3L 11274239 3` UTR CR44720 - chr3L_10_11270001 chr3L_11270001 RAL-441 1256 chr3L 11291727 11291775 chr3L 11291836 11291883 7 109 2.5 2.5 2.5 2.0 156 chr3L 11291727 intron CG6175 - chr3L 11291805 intron CG6175 - chr3L 11291883 intron CG6175 - chr3L_7_11290001 chr3L_11290001 RAL-441 1257 chr3L 11329671 11329726 chr3L 11332896 11332948 jockey 6 3213 6.0 2.0 4.0 1.2 3277 chr3L 11329671 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332948 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-441 1258 chr3L 11404810 11404840 chr3L 11404945 11404974 5 134 2.5 0.5 1.5 2.0 164 chr3L 11404810 intergenic not near genes chr3L 11404892 intergenic not near genes chr3L 11404974 intergenic not near genes chr3L_5_11400001 chr3L_11400001 RAL-441 1259 chr3L 11432902 11432932 chr3L 11432995 11433031 9 98 1.5 1.5 1.5 3.6 129 chr3L 11432902 intergenic not near genes chr3L 11432966 intergenic not near genes chr3L 11433031 intergenic not near genes chr3L_9_11430001 chr3L_11430001 RAL-441 1260 chr3L 11456893 11456915 chr3L 11457009 11457033 6 116 4.0 0.0 2.0 2.0 140 chr3L 11456893 intergenic CG12289 - chr3L 11456963 intergenic CG12289 - chr3L 11457033 intergenic CG12289 - chr3L_6_11455001 chr3L_11455001 RAL-441 1261 chr3L 11471561 11471611 chr3L 11471659 11471708 10 96 2.0 3.5 2.8 2.6 147 chr3L 11471561 intergenic not near genes chr3L 11471634 intergenic not near genes chr3L 11471708 intergenic not near genes chr3L_10_11470001 chr3L_11470001 RAL-441 1262 chr3L 11493139 11493180 chr3L 11493240 11493281 10 102 1.5 2.0 1.8 3.6 142 chr3L 11493139 intron chrb + chr3L 11493210 intron chrb + chr3L 11493281 intron chrb + chr3L_10_11490001 chr3L_11490001 RAL-441 1263 chr3L 11678076 11678125 chr3L 11678183 11678232 16 106 2.0 3.0 2.5 4.6 156 chr3L 11678076 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678232 intron CG32085 - chr3L_16_11675001 chr3L_11675001 RAL-441 1264 chr3L 11723070 11723092 chr3L 11727884 11727907 Doc 5 4813 7.0 2.5 4.8 0.9 4837 chr3L 11723070 3` UTR Bmcp + chr3L 11725488 intron Bmcp + chr3L 11727907 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-441 1265 chr3L 11729670 11729705 chr3L 11729766 11729801 10 94 4.5 6.0 5.2 1.6 131 chr3L 11729670 exon CG32088 + chr3L 11729736 intron CG32088 + chr3L 11729801 exon CG32088 + chr3L_10_11725001 chr3L_11725001 RAL-441 1266 chr3L 11740147 11740152 chr3L 11740230 11740269 5 96 10.5 4.5 7.5 0.6 122 chr3L 11740147 intron CG6024 - chr3L 11740208 intron CG6024 - chr3L 11740269 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-441 1267 chr3L 11744012 11744019 chr3L 11744120 11744147 4 119 6.5 2.0 4.2 0.8 135 chr3L 11744012 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-441 1268 chr3L 7749471 7749471 chr3L 11777678 11777678 5 4028207 11.0 20.0 15.5 0.3 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-441 1269 chr3L 11777678 11777678 chr3L 12163305 12163305 6 385627 17.0 19.0 18.0 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_6_11970001 chr3L_11970001 RAL-441 1270 chr3L 11826539 11826564 chr3L 11826667 11826692 10 126 7.0 2.5 4.8 1.7 153 chr3L 11826539 intergenic CycA - chr3L 11826616 intergenic CycA - chr3L 11826692 intergenic CycA - chr3L_10_11825001 chr3L_11825001 RAL-441 1271 chr3L 11864532 11864584 chr3L 11865847 11865896 pogo 10 1310 4.5 4.0 4.2 1.9 1364 chr3L 11864532 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865896 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-441 1272 chr3L 11910590 11910632 chr3L 11910753 11910792 5 161 3.5 5.0 4.2 1.0 202 chr3L 11910590 intron CG44837 - chr3L 11910691 intron CG44837 - chr3L 11910792 intron CG44837 - chr3L_5_11910001 chr3L_11910001 RAL-441 1273 chr3L 11943474 11943515 chr3L 11943595 11943635 14 118 2.5 0.5 1.5 5.6 161 chr3L 11943474 3` UTR Rpt4R + chr3L 11943554 intergenic Rpt4R +,CG5883 - chr3L 11943635 intergenic CG5883 -,Rpt4R + chr3L_14_11940001 chr3L_11940001 RAL-441 1274 chr3L 12019320 12019348 chr3L 12019453 12019481 6 132 2.0 6.5 4.2 1.2 161 chr3L 12019320 intron rols - chr3L 12019400 intron rols - chr3L 12019481 intron rols - chr3L_6_12015001 chr3L_12015001 RAL-441 1275 chr3L 12052693 12052738 chr3L 12052802 12052847 14 108 2.5 7.0 4.8 2.4 154 chr3L 12052693 intron rols - chr3L 12052770 intron rols - chr3L 12052847 intron rols - chr3L_14_12050001 chr3L_12050001 RAL-441 1276 chr3L 12089066 12089100 chr3L 12089166 12089177 7 97 2.0 6.0 4.0 1.4 111 chr3L 12089066 exon CG17154 + chr3L 12089122 3` UTR CG17154 + chr3L 12089177 3` UTR CG17154 + chr3L_7_12085001 chr3L_12085001 RAL-441 1277 chr3L 12110354 12110397 chr3L 12110525 12110566 6 167 1.0 6.0 3.5 1.3 212 chr3L 12110354 intergenic not near genes chr3L 12110460 intergenic not near genes chr3L 12110566 intergenic not near genes chr3L_6_12110001 chr3L_12110001 RAL-441 1278 chr3L 12119742 12119790 chr3L 12119859 12119907 5 111 2.0 2.5 2.2 1.6 165 chr3L 12119742 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119907 intergenic CG11560 +,ssp + chr3L_5_12115001 chr3L_12115001 RAL-441 1279 chr3L 12170770 12170822 chr3L 12170872 12170924 7 101 2.0 4.0 3.0 1.8 154 chr3L 12170770 intron Rh7 - chr3L 12170847 intron Rh7 - chr3L 12170924 intron Rh7 - chr3L_7_12170001 chr3L_12170001 RAL-441 1280 chr3L 12356469 12356482 chr3L 12356636 12356651 7 169 6.0 5.0 5.5 1.1 182 chr3L 12356469 intergenic not near genes chr3L 12356560 intergenic not near genes chr3L 12356651 intergenic not near genes chr3L_7_12355001 chr3L_12355001 RAL-441 1281 chr3L 12369515 12369566 chr3L 12369625 12369676 15 109 4.0 1.0 2.5 4.3 161 chr3L 12369515 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369676 intron Ncc69 - chr3L_15_12365001 chr3L_12365001 RAL-441 1282 chr3L 12381524 12381547 chr3L 12381622 12381645 5 98 0.0 0.5 0.2 4.2 121 chr3L 12381524 intron Ncc69 - chr3L 12381584 intron Ncc69 - chr3L 12381645 intron Ncc69 - chr3L_5_12380001 chr3L_12380001 RAL-441 1283 chr3L 12476267 12476316 chr3L 12476364 12476411 12 94 2.0 1.5 1.8 4.3 144 chr3L 12476267 intron CG10663 - chr3L 12476339 intron CG10663 - chr3L 12476411 intron CG10663 - chr3L_12_12475001 chr3L_12475001 RAL-441 1284 chr3L 12563987 12564017 chr3L 12564222 12564252 8 236 2.0 3.5 2.8 2.1 265 chr3L 12563987 intron sowah - chr3L 12564120 intron sowah - chr3L 12564252 intron sowah - chr3L_8_12560001 chr3L_12560001 RAL-441 1285 chr3L 12566823 12566842 chr3L 12566925 12566945 5 115 4.0 4.0 4.0 1.0 122 chr3L 12566823 intron sowah - chr3L 12566884 intron sowah - chr3L 12566945 intron sowah - chr3L_5_12565001 chr3L_12565001 RAL-441 1286 chr3L 12626133 12626165 chr3L 12626262 12626294 8 128 0.0 3.0 1.5 3.2 161 chr3L 12626133 intergenic not near genes chr3L 12626214 intergenic not near genes chr3L 12626294 intergenic not near genes chr3L_8_12625001 chr3L_12625001 RAL-441 1287 chr3L 12706624 12706649 chr3L 12706770 12706773 4 139 5.0 5.0 5.0 0.7 149 chr3L 12706624 intron mirr + chr3L 12706698 intron mirr + chr3L 12706773 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-441 1288 chr3L 12722286 12722309 chr3L 12722387 12722410 4 102 2.0 1.0 1.5 1.6 124 chr3L 12722286 intergenic not near genes chr3L 12722348 intergenic not near genes chr3L 12722410 intergenic not near genes chr3L_4_12720001 chr3L_12720001 RAL-441 1289 chr3L 12801961 12801970 chr3L 12802057 12802066 4 94 4.5 2.0 3.2 1.0 105 chr3L 12801961 intron Atg1 - chr3L 12802014 intron Atg1 - chr3L 12802066 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-441 1290 chr3L 12801971 12802009 chr3L 12802056 12802105 12 91 2.5 2.0 2.2 3.8 134 chr3L 12801971 intron Atg1 - chr3L 12802038 intron Atg1 - chr3L 12802105 intron Atg1 - chr3L_12_12800001 chr3L_12800001 RAL-441 1291 chr3L 12874920 12874960 chr3L 12877232 12877237 jockey 12 2307 3.5 5.0 4.2 2.3 2317 chr3L 12874920 intergenic not near genes chr3L 12876078 intergenic not near genes chr3L 12877237 intergenic not near genes chr3L_12_12875001 chr3L_12875001 RAL-441 1292 chr3L 12894784 12894816 chr3L 12894882 12894914 10 92 5.0 9.0 7.0 1.2 130 chr3L 12894784 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894914 intergenic CG14118 + chr3L_10_12890001 chr3L_12890001 RAL-441 1293 chr3L 12896214 12896260 chr3L 12896312 12896318 4 83 4.0 1.5 2.8 1.1 104 chr3L 12896214 intergenic not near genes chr3L 12896266 intergenic not near genes chr3L 12896318 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-441 1294 chr3L 12957768 12957814 chr3L 12962270 12962315 copia 15 4501 4.5 6.5 5.5 2.3 4547 chr3L 12957768 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962315 intergenic not near genes chr3L_15_12960001 chr3L_12960001 RAL-441 1295 chr3L 12970967 12971018 chr3L 12971070 12971118 8 102 1.5 1.5 1.5 3.2 151 chr3L 12970967 intergenic CG10748 - chr3L 12971042 intergenic CG10748 - chr3L 12971118 intergenic CG10748 - chr3L_8_12970001 chr3L_12970001 RAL-441 1296 chr3L 12980498 12980553 chr3L 12980607 12980664 10 105 3.0 0.0 1.5 4.0 166 chr3L 12980498 intergenic not near genes chr3L 12980581 intergenic not near genes chr3L 12980664 intergenic not near genes chr3L_10_12980001 chr3L_12980001 RAL-441 1297 chr3L 13007677 13007716 chr3L 13007772 13007814 7 95 2.5 1.5 2.0 2.3 137 chr3L 13007677 exon CG11263 + chr3L 13007746 3` UTR CG11263 + chr3L 13007814 3` UTR CG11263 + chr3L_7_13005001 chr3L_13005001 RAL-441 1298 chr3L 13092055 13092090 chr3L 13092152 13092172 4 93 4.0 3.0 3.5 0.9 117 chr3L 13092055 intergenic not near genes chr3L 13092114 intergenic not near genes chr3L 13092172 intergenic not near genes chr3L_4_13090001 chr3L_13090001 RAL-441 1299 chr3L 13144100 13144127 chr3L 13144197 13144221 10 96 1.5 3.0 2.2 3.1 121 chr3L 13144100 intergenic not near genes chr3L 13144160 intergenic not near genes chr3L 13144221 intergenic not near genes chr3L_10_13140001 chr3L_13140001 RAL-441 1300 chr3L 13144128 13144141 chr3L 13144195 13144237 4 83 1.0 3.0 2.0 1.3 109 chr3L 13144128 intergenic not near genes chr3L 13144182 intergenic not near genes chr3L 13144237 intergenic not near genes chr3L_4_13140001 chr3L_13140001 RAL-441 1301 chr3L 13182435 13182469 chr3L 13182530 13182567 4 97 3.5 1.0 2.2 1.2 132 chr3L 13182435 intergenic not near genes chr3L 13182501 intergenic not near genes chr3L 13182567 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-441 1302 chr3L 13226036 13226079 chr3L 13226259 13226271 11 217 4.5 6.0 5.2 1.8 235 chr3L 13226036 intergenic not near genes chr3L 13226154 intergenic not near genes chr3L 13226271 intergenic not near genes chr3L_11_13225001 chr3L_13225001 RAL-441 1303 chr3L 13267271 13267309 chr3L 13267400 13267441 5 131 6.0 3.5 4.8 0.9 170 chr3L 13267271 intron caps + chr3L 13267356 intron caps + chr3L 13267441 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-441 1304 chr3L 13296501 13296547 chr3L 13296612 13296656 15 110 6.5 2.0 4.2 2.9 155 chr3L 13296501 intergenic Sfp70A4 - chr3L 13296578 3` UTR Sfp70A4 - chr3L 13296656 3` UTR Sfp70A4 - chr3L_15_13295001 chr3L_13295001 RAL-441 1305 chr3L 13299382 13299414 chr3L 13299493 13299525 9 111 4.5 1.0 2.8 2.4 143 chr3L 13299382 intergenic CG42481 -,CG43147 - chr3L 13299454 intergenic CG43147 -,CG42481 - chr3L 13299525 intergenic CG43147 - chr3L_9_13295001 chr3L_13295001 RAL-441 1306 chr3L 13315851 13315859 chr3L 13315958 13315966 6 107 2.5 2.0 2.2 1.9 115 chr3L 13315851 intergenic not near genes chr3L 13315908 intergenic not near genes chr3L 13315966 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-441 1307 chr3L 13335518 13335559 chr3L 13335638 13335679 13 117 2.0 2.5 2.2 4.1 161 chr3L 13335518 intergenic not near genes chr3L 13335598 intergenic not near genes chr3L 13335679 intergenic not near genes chr3L_13_13335001 chr3L_13335001 RAL-441 1308 chr3L 13337151 13337156 chr3L 13337262 13337267 4 111 0.0 2.5 1.2 1.8 116 chr3L 13337151 intergenic not near genes chr3L 13337209 intergenic not near genes chr3L 13337267 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-441 1309 chr3L 13338268 13338313 chr3L 13338382 13338429 21 110 3.0 5.5 4.2 4.0 161 chr3L 13338268 intergenic not near genes chr3L 13338348 intergenic not near genes chr3L 13338429 intergenic not near genes chr3L_21_13335001 chr3L_13335001 RAL-441 1310 chr3L 13392751 13392765 chr3L 13392854 13392868 6 103 6.5 0.0 3.2 1.4 117 chr3L 13392751 intergenic not near genes chr3L 13392810 intergenic not near genes chr3L 13392868 intergenic not near genes chr3L_6_13390001 chr3L_13390001 RAL-441 1311 chr3L 13396046 13396091 chr3L 13396149 13396196 10 101 5.0 1.5 3.2 2.4 150 chr3L 13396046 intergenic sens - chr3L 13396121 intergenic sens - chr3L 13396196 intergenic sens - chr3L_10_13395001 chr3L_13395001 RAL-441 1312 chr3L 13525140 13525186 chr3L 13532956 13532999 roo 10 7807 6.0 8.5 7.2 1.2 7859 chr3L 13525140 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532999 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-441 1313 chr3L 13535897 13535935 chr3L 13535985 13536031 6 91 4.0 3.0 3.5 1.3 134 chr3L 13535897 intergenic not near genes chr3L 13535964 intergenic not near genes chr3L 13536031 intergenic not near genes chr3L_6_13535001 chr3L_13535001 RAL-441 1314 chr3L 13559961 13559986 chr3L 13560067 13560092 10 106 5.5 4.0 4.8 1.7 131 chr3L 13559961 intron bru-3 - chr3L 13560026 intron bru-3 - chr3L 13560092 intron bru-3 - chr3L_10_13560001 chr3L_13560001 RAL-441 1315 chr3L 13559988 13559997 chr3L 13560057 13560103 5 92 3.0 3.0 3.0 1.2 115 chr3L 13559988 intron bru-3 - chr3L 13560046 intron bru-3 - chr3L 13560103 intron bru-3 - chr3L_5_13560001 chr3L_13560001 RAL-441 1316 chr3L 13582225 13582237 chr3L 13582314 13582345 6 103 3.0 6.5 4.8 1.0 120 chr3L 13582225 intron bru-3 - chr3L 13582285 intron bru-3 - chr3L 13582345 intron bru-3 - chr3L_6_13580001 chr3L_13580001 RAL-441 1317 chr3L 13582238 13582242 chr3L 13582298 13582350 5 96 2.0 5.0 3.5 1.1 112 chr3L 13582238 intron bru-3 - chr3L 13582294 intron bru-3 - chr3L 13582350 intron bru-3 - chr3L_5_13580001 chr3L_13580001 RAL-441 1318 chr3L 13677514 13677553 chr3L 13677611 13677650 7 96 2.5 1.5 2.0 2.3 136 chr3L 13677514 intron bru-3 - chr3L 13677582 intron bru-3 - chr3L 13677650 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-441 1319 chr3L 13703449 13703466 chr3L 13703532 13703572 8 100 3.5 5.5 4.5 1.5 123 chr3L 13703449 intron bru-3 - chr3L 13703510 intron bru-3 - chr3L 13703572 intron bru-3 - chr3L_8_13700001 chr3L_13700001 RAL-441 1320 chr3L 13722430 13722454 chr3L 13722528 13722552 4 98 2.0 2.5 2.2 1.2 122 chr3L 13722430 intron bru-3 - chr3L 13722491 intron bru-3 - chr3L 13722552 intron bru-3 - chr3L_4_13720001 chr3L_13720001 RAL-441 1321 chr3L 13722456 13722471 chr3L 13722526 13722565 5 86 1.0 2.0 1.5 2.0 109 chr3L 13722456 intron bru-3 - chr3L 13722510 intron bru-3 - chr3L 13722565 intron bru-3 - chr3L_5_13720001 chr3L_13720001 RAL-441 1322 chr3L 13745280 13745307 chr3L 13745389 13745389 5 103 2.0 0.0 1.0 2.5 109 chr3L 13745280 intron bru-3 - chr3L 13745334 intron bru-3 - chr3L 13745389 intron bru-3 - chr3L_5_13745001 chr3L_13745001 RAL-441 1323 chr3L 13755900 13755929 chr3L 13756007 13756036 8 106 7.0 3.5 5.2 1.3 136 chr3L 13755900 intron bru-3 - chr3L 13755968 intron bru-3 - chr3L 13756036 intron bru-3 - chr3L_8_13755001 chr3L_13755001 RAL-441 1324 chr3L 13804524 13804577 chr3L 13822829 13822856 roo 12 18300 3.0 4.0 3.5 2.7 18332 chr3L 13804524 intergenic not near genes chr3L 13813690 intergenic not near genes chr3L 13822856 intergenic not near genes chr3L_12_13810001 chr3L_13810001 RAL-441 1325 chr3L 13841132 13841162 chr3L 13841243 13841269 4 109 0.0 3.0 1.5 1.6 137 chr3L 13841132 3` UTR CG8757 - chr3L 13841200 3` UTR CG8757 - chr3L 13841269 3` UTR CG8757 - chr3L_4_13840001 chr3L_13840001 RAL-441 1326 chr3L 13936639 13936651 chr3L 13936791 13936804 6 153 0.5 2.0 1.2 2.7 165 chr3L 13936639 intergenic not near genes chr3L 13936722 intergenic not near genes chr3L 13936804 intergenic not near genes chr3L_6_13935001 chr3L_13935001 RAL-441 1327 chr3L 14004422 14004470 chr3L 14004518 14004569 14 90 5.0 3.5 4.2 2.7 147 chr3L 14004422 intron upSET + chr3L 14004496 intron upSET + chr3L 14004569 intron upSET + chr3L_14_14000001 chr3L_14000001 RAL-441 1328 chr3L 14110591 14110618 chr3L 14110671 14110681 6 87 3.5 5.0 4.2 1.2 90 chr3L 14110591 intergenic not near genes chr3L 14110636 intergenic not near genes chr3L 14110681 intergenic not near genes chr3L_6_14110001 chr3L_14110001 RAL-441 1329 chr3L 14185142 14185188 chr3L 14185238 14185284 15 92 1.5 5.0 3.2 3.6 142 chr3L 14185142 intergenic not near genes chr3L 14185213 intergenic not near genes chr3L 14185284 intergenic not near genes chr3L_15_14185001 chr3L_14185001 RAL-441 1330 chr3L 14234828 14234855 chr3L 14234945 14234947 6 113 2.5 5.5 4.0 1.2 119 chr3L 14234828 intergenic CG7924 +,CG34244 - chr3L 14234888 intergenic CG34244 -,CG7924 + chr3L 14234947 intergenic CG34244 -,CG7924 + chr3L_6_14230001 chr3L_14230001 RAL-441 1331 chr3L 14239976 14240001 chr3L 14240093 14240118 5 116 4.5 4.0 4.2 1.0 142 chr3L 14239976 intergenic not near genes chr3L 14240047 intergenic not near genes chr3L 14240118 intergenic not near genes chr3L_5_14240001 chr3L_14240001 RAL-441 1332 chr3L 14245556 14245586 chr3L 14245666 14245699 1360 7 110 4.5 3.0 3.8 1.5 143 chr3L 14245556 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245699 intergenic CR44561 -,CR44560 + chr3L_7_14245001 chr3L_14245001 RAL-441 1333 chr3L 14282575 14282607 chr3L 14282667 14282669 9 90 5.5 3.5 4.5 1.6 94 chr3L 14282575 intron fz + chr3L 14282622 intron fz + chr3L 14282669 intron fz + chr3L_9_14280001 chr3L_14280001 RAL-441 1334 chr3L 14286640 14286686 chr3L 14286733 14286782 8 96 4.0 3.0 3.5 1.8 142 chr3L 14286640 intron fz + chr3L 14286711 intron fz + chr3L 14286782 intron fz + chr3L_8_14285001 chr3L_14285001 RAL-441 1335 chr3L 14295975 14296013 chr3L 14296471 14296518 roo 7 501 4.0 3.0 3.5 1.6 543 chr3L 14295975 intron fz + chr3L 14296246 intron fz + chr3L 14296518 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-441 1336 chr3L 14338298 14338325 chr3L 14338395 14338441 10 114 0.5 1.0 0.8 5.6 143 chr3L 14338298 intron fz + chr3L 14338370 intron fz + chr3L 14338441 intron fz + chr3L_10_14335001 chr3L_14335001 RAL-441 1337 chr3L 14341423 14341432 chr3L 14341578 14341587 4 155 1.0 4.5 2.8 1.1 164 chr3L 14341423 intron fz + chr3L 14341505 intron fz + chr3L 14341587 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-441 1338 chr3L 14356500 14356551 chr3L 14356598 14356651 13 97 4.5 4.0 4.2 2.5 151 chr3L 14356500 intron fz + chr3L 14356576 intron fz + chr3L 14356651 intron fz + chr3L_13_14355001 chr3L_14355001 RAL-441 1339 chr3L 14370040 14370045 chr3L 14370105 14370133 4 79 6.5 7.0 6.8 0.5 93 chr3L 14370040 intergenic CG13481 - chr3L 14370086 intergenic CG13481 - chr3L 14370133 intergenic CG13481 - chr3L_4_14370001 chr3L_14370001 RAL-441 1340 chr3L 14443603 14443657 chr3L 14443812 14443856 8 206 1.5 2.5 2.0 2.7 253 chr3L 14443603 intron bbg - chr3L 14443730 intron bbg - chr3L 14443856 intron bbg - chr3L_8_14440001 chr3L_14440001 RAL-441 1341 chr3L 14468435 14468464 chr3L 14473660 14473690 copia 6 5224 6.5 2.0 4.2 1.2 5255 chr3L 14468435 intron bbg - chr3L 14471062 intron bbg - chr3L 14473690 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-441 1342 chr3L 14522087 14522120 chr3L 14522206 14522229 7 117 3.5 3.5 3.5 1.6 142 chr3L 14522087 intron bbg - chr3L 14522158 intron bbg - chr3L 14522229 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-441 1343 chr3L 14546810 14546816 chr3L 14546914 14546936 4 113 0.0 5.0 2.5 1.1 126 chr3L 14546810 intron CG9238 - chr3L 14546873 intron CG9238 - chr3L 14546936 intron CG9238 - chr3L_4_14545001 chr3L_14545001 RAL-441 1344 chr3L 14555898 14555940 chr3L 14556000 14556042 6 96 2.5 7.0 4.8 1.0 144 chr3L 14555898 intergenic not near genes chr3L 14555970 intergenic not near genes chr3L 14556042 intergenic not near genes chr3L_6_14555001 chr3L_14555001 RAL-441 1345 chr3L 14618388 14618423 chr3L 14618623 14618635 6 231 4.5 3.0 3.8 1.2 247 chr3L 14618388 intron shd + chr3L 14618512 intron shd + chr3L 14618635 intron shd + chr3L_6_14615001 chr3L_14615001 RAL-441 1346 chr3L 14635690 14635721 chr3L 14635788 14635819 4 97 7.5 2.0 4.8 0.7 129 chr3L 14635690 intron dlp + chr3L 14635754 intron dlp + chr3L 14635819 intron dlp + chr3L_4_14635001 chr3L_14635001 RAL-441 1347 chr3L 14702007 14702019 chr3L 14702106 14702118 4 99 0.0 4.5 2.2 1.2 111 chr3L 14702007 intron ome + chr3L 14702062 intron ome + chr3L 14702118 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-441 1348 chr3L 14721165 14721203 chr3L 14723027 14723052 Rt1c 4 1856 9.0 3.0 6.0 0.6 1887 chr3L 14721165 intron ome + chr3L 14722108 intron ome + chr3L 14723052 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-441 1349 chr3L 14724810 14724836 chr3L 14724914 14724940 4 104 0.0 6.5 3.2 1.0 130 chr3L 14724810 intron ome + chr3L 14724875 intron ome + chr3L 14724940 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-441 1350 chr3L 14725584 14725619 chr3L 14728598 14728633 Doc 4 3014 0.0 6.5 3.2 1.0 3049 chr3L 14725584 intron ome + chr3L 14727108 intron ome + chr3L 14728633 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-441 1351 chr3L 14741127 14741167 chr3L 14741225 14741229 10 92 4.0 5.5 4.8 1.7 102 chr3L 14741127 intron ome + chr3L 14741178 intron ome + chr3L 14741229 intron ome + chr3L_10_14740001 chr3L_14740001 RAL-441 1352 chr3L 14840377 14840390 chr3L 14840473 14840495 4 111 1.0 5.5 3.2 1.0 118 chr3L 14840377 intron CG17839 + chr3L 14840436 intron CG17839 + chr3L 14840495 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-441 1353 chr3L 14861787 14861831 chr3L 14861884 14861911 7 96 5.0 3.0 4.0 1.4 124 chr3L 14861787 intron CG17839 + chr3L 14861849 intron CG17839 + chr3L 14861911 intron CG17839 + chr3L_7_14860001 chr3L_14860001 RAL-441 1354 chr3L 14893645 14893683 chr3L 14893743 14893780 11 101 2.5 5.0 3.8 2.3 135 chr3L 14893645 intergenic CG34245 - chr3L 14893712 intergenic CG34245 - chr3L 14893780 3` UTR CG34245 - chr3L_11_14890001 chr3L_14890001 RAL-441 1355 chr3L 14913893 14913931 chr3L 14913978 14914021 8 90 1.0 0.0 0.5 5.3 128 chr3L 14913893 intron DCX-EMAP + chr3L 14913957 intron DCX-EMAP + chr3L 14914021 intron DCX-EMAP + chr3L_8_14910001 chr3L_14910001 RAL-441 1356 chr3L 15085056 15085074 chr3L 15086216 15086237 1360 6 1169 2.5 2.0 2.2 1.9 1181 chr3L 15085056 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086237 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-441 1357 chr3L 15166960 15166965 chr3L 15167067 15167072 4 107 10.5 5.5 8.0 0.4 112 chr3L 15166960 intergenic not near genes chr3L 15167016 intergenic not near genes chr3L 15167072 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-441 1358 chr3L 15166968 15166999 chr3L 15167065 15167107 15 104 4.0 5.5 4.8 2.6 139 chr3L 15166968 intergenic not near genes chr3L 15167038 intergenic not near genes chr3L 15167107 intergenic not near genes chr3L_15_15165001 chr3L_15165001 RAL-441 1359 chr3L 15233534 15233581 chr3L 15233635 15233682 6 101 1.0 1.5 1.2 2.7 148 chr3L 15233534 intergenic not near genes chr3L 15233608 intergenic not near genes chr3L 15233682 intergenic not near genes chr3L_6_15230001 chr3L_15230001 RAL-441 1360 chr3L 15295755 15295801 chr3L 15298617 15298664 gypsy5 9 2860 3.5 3.0 3.2 2.1 2909 chr3L 15295755 intergenic not near genes chr3L 15297210 intergenic not near genes chr3L 15298664 intergenic Best4 + chr3L_9_15295001 chr3L_15295001 RAL-441 1361 chr3L 15303185 15303237 chr3L 15303292 15303344 9 103 1.0 1.5 1.2 4.1 159 chr3L 15303185 intergenic Best3 - chr3L 15303264 intergenic Best3 - chr3L 15303344 intergenic not near genes chr3L_9_15300001 chr3L_15300001 RAL-441 1362 chr3L 15327214 15327251 chr3L 15327295 15327298 14 86 2.5 2.5 2.5 4.0 84 chr3L 15327214 intergenic not near genes chr3L 15327256 intergenic not near genes chr3L 15327298 intergenic not near genes chr3L_14_15325001 chr3L_15325001 RAL-441 1363 chr3L 15406003 15406054 chr3L 15406105 15406128 13 92 1.0 2.5 1.8 4.6 125 chr3L 15406003 intergenic not near genes chr3L 15406066 intergenic not near genes chr3L 15406128 intergenic not near genes chr3L_13_15405001 chr3L_15405001 RAL-441 1364 chr3L 15413890 15413928 chr3L 15413991 15414034 6 105 2.5 1.5 2.0 2.0 144 chr3L 15413890 intergenic not near genes chr3L 15413962 intergenic not near genes chr3L 15414034 intergenic not near genes chr3L_6_15410001 chr3L_15410001 RAL-441 1365 chr3L 15423748 15423784 chr3L 15426612 15426648 opus 7 2864 3.0 0.5 1.8 2.5 2900 chr3L 15423748 intergenic not near genes chr3L 15425198 intergenic not near genes chr3L 15426648 intergenic not near genes chr3L_7_15425001 chr3L_15425001 RAL-441 1366 chr3L 15444632 15444683 chr3L 15444746 15444793 11 97 2.0 2.0 2.0 3.7 161 chr3L 15444632 intergenic not near genes chr3L 15444712 intergenic not near genes chr3L 15444793 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-441 1367 chr3L 15474698 15474726 chr3L 15474804 15474836 5 107 4.0 5.5 4.8 0.9 138 chr3L 15474698 intergenic not near genes chr3L 15474767 intergenic not near genes chr3L 15474836 intergenic not near genes chr3L_5_15470001 chr3L_15470001 RAL-441 1368 chr3L 15511295 15511319 chr3L 15511392 15511419 11 96 2.0 3.0 2.5 3.1 124 chr3L 15511295 intron Eip71CD + chr3L 15511357 intron Eip71CD + chr3L 15511419 intron Eip71CD + chr3L_11_15510001 chr3L_15510001 RAL-441 1369 chr3L 15533127 15533156 chr3L 15533228 15533255 7 101 0.0 5.0 2.5 2.0 128 chr3L 15533127 intergenic not near genes chr3L 15533191 intergenic not near genes chr3L 15533255 intergenic not near genes chr3L_7_15530001 chr3L_15530001 RAL-441 1370 chr3L 15541600 15541643 chr3L 15541711 15541751 7 110 4.5 1.5 3.0 1.8 151 chr3L 15541600 intron CrebA + chr3L 15541676 intron CrebA + chr3L 15541751 intron CrebA + chr3L_7_15540001 chr3L_15540001 RAL-441 1371 chr3L 15600191 15600195 chr3L 15600312 15600312 4 120 3.0 2.0 2.5 1.1 121 chr3L 15600191 intron RhoGAP71E + chr3L 15600252 intron RhoGAP71E + chr3L 15600312 intron RhoGAP71E + chr3L_4_15600001 chr3L_15600001 RAL-441 1372 chr3L 15633068 15633190 chr3L 15633156 15633290 11 93 0.0 1.5 0.8 6.1 222 chr3L 15633068 intron comm3 - chr3L 15633179 intron comm3 - chr3L 15633290 intron comm3 - chr3L_11_15630001 chr3L_15630001 RAL-441 1373 chr3L 15638010 15638043 chr3L 15638164 15638190 6 151 2.0 1.0 1.5 2.4 180 chr3L 15638010 intron comm3 - chr3L 15638100 intron comm3 - chr3L 15638190 intron comm3 - chr3L_6_15635001 chr3L_15635001 RAL-441 1374 chr3L 15679154 15679200 chr3L 15679505 15679552 11 349 3.0 1.5 2.2 3.4 398 chr3L 15679154 intergenic not near genes chr3L 15679353 intergenic CG7304 + chr3L 15679552 intergenic CG7304 + chr3L_11_15675001 chr3L_15675001 RAL-441 1375 chr3L 15695973 15695990 chr3L 15696071 15696088 4 98 5.5 6.5 6.0 0.6 115 chr3L 15695973 intergenic not near genes chr3L 15696030 intergenic not near genes chr3L 15696088 intergenic not near genes chr3L_4_15695001 chr3L_15695001 RAL-441 1376 chr3L 15695991 15695996 chr3L 15696067 15696094 5 93 5.5 6.0 5.8 0.7 103 chr3L 15695991 intergenic not near genes chr3L 15696042 intergenic not near genes chr3L 15696094 intergenic not near genes chr3L_5_15695001 chr3L_15695001 RAL-441 1377 chr3L 15732112 15732153 chr3L 15732213 15732254 5 100 3.5 0.0 1.8 1.8 142 chr3L 15732112 intergenic not near genes chr3L 15732183 intergenic not near genes chr3L 15732254 intergenic not near genes chr3L_5_15730001 chr3L_15730001 RAL-441 1378 chr3L 15756860 15756876 chr3L 15756963 15756963 9 101 11.5 0.0 5.8 1.3 103 chr3L 15756860 intergenic not near genes chr3L 15756912 intergenic not near genes chr3L 15756963 intergenic not near genes chr3L_9_15755001 chr3L_15755001 RAL-441 1379 chr3L 15756881 15756904 chr3L 15756962 15757001 6 94 6.0 0.0 3.0 1.5 120 chr3L 15756881 intergenic not near genes chr3L 15756941 intergenic not near genes chr3L 15757001 intergenic not near genes chr3L_6_15755001 chr3L_15755001 RAL-441 1380 chr3L 15832241 15832276 chr3L 15832341 15832377 13 99 2.5 3.5 3.0 3.2 136 chr3L 15832241 intergenic CG12713 +,dbo + chr3L 15832309 intergenic CG12713 +,dbo + chr3L 15832377 intergenic CG12713 +,dbo + chr3L_13_15830001 chr3L_15830001 RAL-441 1381 chr3L 15840420 15840468 chr3L 15840526 15840573 5 101 2.0 1.0 1.5 2.0 153 chr3L 15840420 intron CG32150 - chr3L 15840496 intron CG32150 - chr3L 15840573 intron CG32150 - chr3L_5_15840001 chr3L_15840001 RAL-441 1382 chr3L 15871582 15871608 chr3L 15871686 15871712 4 104 1.5 0.5 1.0 2.0 130 chr3L 15871582 intron pHCl - chr3L 15871647 intron pHCl - chr3L 15871712 intron pHCl - chr3L_4_15870001 chr3L_15870001 RAL-441 1383 chr3L 15883174 15883215 chr3L 15883485 15883493 8 305 3.0 4.0 3.5 1.8 319 chr3L 15883174 intron pHCl - chr3L 15883334 intron pHCl - chr3L 15883493 intron pHCl - chr3L_8_15880001 chr3L_15880001 RAL-441 1384 chr3L 15916830 15916857 chr3L 15916927 15916954 6 95 3.0 1.0 2.0 2.0 124 chr3L 15916830 intron sff - chr3L 15916892 intron sff - chr3L 15916954 intron sff - chr3L_6_15915001 chr3L_15915001 RAL-441 1385 chr3L 16112935 16112964 chr3L 16113154 16113184 8 220 1.5 7.0 4.2 1.5 249 chr3L 16112935 intergenic Taf4 +,Zn72D - chr3L 16113060 intergenic Taf4 +,Zn72D - chr3L 16113184 intergenic Taf4 + chr3L_8_16110001 chr3L_16110001 RAL-441 1386 chr3L 16162597 16162608 chr3L 16162700 16162710 5 103 4.0 3.0 3.5 1.1 113 chr3L 16162597 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162710 intron CG5151 - chr3L_5_16160001 chr3L_16160001 RAL-441 1387 chr3L 16182066 16182094 chr3L 16182191 16182234 8 133 0.0 6.0 3.0 2.0 168 chr3L 16182066 intergenic not near genes chr3L 16182150 intergenic not near genes chr3L 16182234 intergenic not near genes chr3L_8_16180001 chr3L_16180001 RAL-441 1388 chr3L 16184087 16184135 chr3L 16188926 16188941 X-element 4 4830 2.0 2.0 2.0 1.3 4854 chr3L 16184087 intergenic not near genes chr3L 16186514 intergenic not near genes chr3L 16188941 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-441 1389 chr3L 16212789 16212844 chr3L 16212900 16212949 6 110 2.0 0.5 1.2 2.7 160 chr3L 16212789 intergenic CG13073 - chr3L 16212869 intergenic CG13073 - chr3L 16212949 intergenic CG13073 - chr3L_6_16210001 chr3L_16210001 RAL-441 1390 chr3L 16236322 16236350 chr3L 16236457 16236485 6 132 4.0 1.5 2.8 1.6 163 chr3L 16236322 3` UTR l(3)72Dp + chr3L 16236404 3` UTR l(3)72Dp + chr3L 16236485 3` UTR l(3)72Dp + chr3L_6_16235001 chr3L_16235001 RAL-441 1391 chr3L 16239918 16239935 chr3L 16240014 16240029 6 96 6.0 3.0 4.5 1.1 111 chr3L 16239918 intergenic l(3)72Dr + chr3L 16239974 intergenic not near genes chr3L 16240029 intergenic not near genes chr3L_6_16235001 chr3L_16235001 RAL-441 1392 chr3L 16246564 16246597 chr3L 16250218 16250251 8 3656 23.0 18.5 20.8 0.4 3687 chr3L 16246564 intergenic not near genes chr3L 16248408 intergenic not near genes chr3L 16250251 3` UTR CG13055 - chr3L_8_16245001 chr3L_16245001 RAL-441 1393 chr3L 16457508 16457541 chr3L 16457624 16457656 5 114 4.5 4.5 4.5 0.9 148 chr3L 16457508 intron CG33158 + chr3L 16457582 intron CG33158 + chr3L 16457656 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-441 1394 chr3L 16462719 16462727 chr3L 16462824 16462835 4 110 5.0 2.5 3.8 0.8 116 chr3L 16462719 intron CG33158 + chr3L 16462777 intron CG33158 + chr3L 16462835 intron CG33158 + chr3L_4_16460001 chr3L_16460001 RAL-441 1395 chr3L 16493959 16494003 chr3L 16494492 16494514 jockey 13 530 8.0 6.5 7.2 1.6 555 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494236 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494514 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_13_16490001 chr3L_16490001 RAL-441 1396 chr3L 16498510 16498553 chr3L 16498637 16498677 12 126 3.5 0.0 1.8 4.3 167 chr3L 16498510 intron,exon CG43373 -,st + chr3L 16498594 intron,intron CG43373 -,st + chr3L 16498677 intron,intron CG43373 -,st + chr3L_12_16495001 chr3L_16495001 RAL-441 1397 chr3L 16533543 16533578 chr3L 16533674 16533709 6 128 0.5 2.5 1.5 2.4 166 chr3L 16533543 intron CG43373 - chr3L 16533626 intron CG43373 - chr3L 16533709 intron CG43373 - chr3L_6_16530001 chr3L_16530001 RAL-441 1398 chr3L 16537829 16537876 chr3L 16537936 16537983 10 103 0.0 3.5 1.8 3.6 154 chr3L 16537829 intron CG43373 - chr3L 16537906 intron CG43373 - chr3L 16537983 intron CG43373 - chr3L_10_16535001 chr3L_16535001 RAL-441 1399 chr3L 16560308 16560334 chr3L 16560387 16560413 6 93 2.5 3.5 3.0 1.5 105 chr3L 16560308 intergenic not near genes chr3L 16560360 intergenic not near genes chr3L 16560413 intergenic not near genes chr3L_6_16560001 chr3L_16560001 RAL-441 1400 chr3L 16561093 16561130 chr3L 16561186 16561202 14 93 3.0 4.5 3.8 2.9 109 chr3L 16561093 intergenic not near genes chr3L 16561148 intergenic not near genes chr3L 16561202 intergenic not near genes chr3L_14_16560001 chr3L_16560001 RAL-441 1401 chr3L 16563215 16563229 chr3L 16563316 16563329 8 100 6.0 0.5 3.2 1.9 114 chr3L 16563215 intergenic Mipp1 - chr3L 16563272 intergenic Mipp1 - chr3L 16563329 intergenic Mipp1 - chr3L_8_16560001 chr3L_16560001 RAL-441 1402 chr3L 16616497 16616509 chr3L 16621844 16621856 297 5 5347 7.0 4.0 5.5 0.8 5359 chr3L 16616497 3` UTR Abl - chr3L 16619176 3` UTR Abl - chr3L 16621856 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-441 1403 chr3L 16616510 16616530 chr3L 16621842 16621863 297 5 5339 4.0 4.0 4.0 1.0 5353 chr3L 16616510 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621863 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-441 1404 chr3L 16684010 16684053 chr3L 16689250 16689263 copia 7 5236 0.5 1.0 0.8 3.9 5253 chr3L 16684010 intron,intron Lasp -,CG43954 - chr3L 16686636 intron,intron Lasp -,CG43954 - chr3L 16689263 intron,intron Lasp -,CG43954 - chr3L_7_16685001 chr3L_16685001 RAL-441 1405 chr3L 16786984 16786992 chr3L 16787064 16787088 6 92 1.0 2.5 1.8 2.1 104 chr3L 16786984 intergenic Int6 - chr3L 16787036 intergenic Int6 - chr3L 16787088 intergenic Int6 -,CG9674 - chr3L_6_16785001 chr3L_16785001 RAL-441 1406 chr3L 16817858 16817901 chr3L 16818018 16818060 8 156 4.0 3.0 3.5 1.8 202 chr3L 16817858 intron,intron nudC +,CG13024 - chr3L 16817959 intron,intron nudC +,CG13024 - chr3L 16818060 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-441 1407 chr3L 16818729 16818764 chr3L 16818825 16818860 7 95 4.0 3.5 3.8 1.5 131 chr3L 16818729 intron,intron nudC +,CG13024 - chr3L 16818794 intron,intron nudC +,CG13024 - chr3L 16818860 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-441 1408 chr3L 16818766 16818779 chr3L 16818824 16818875 7 87 1.5 3.5 2.5 2.0 109 chr3L 16818766 intron,intron nudC +,CG13024 - chr3L 16818820 intron,intron nudC +,CG13024 - chr3L 16818875 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-441 1409 chr3L 16845018 16845028 chr3L 16845141 16845161 8 132 2.5 3.5 3.0 2.0 143 chr3L 16845018 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845161 intergenic CG9669 -,CG9715 + chr3L_8_16845001 chr3L_16845001 RAL-441 1410 chr3L 16845029 16845045 chr3L 16845138 16845156 9 125 1.0 3.0 2.0 3.0 127 chr3L 16845029 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_9_16845001 chr3L_16845001 RAL-441 1411 chr3L 16861008 16861052 chr3L 16861130 16861173 10 121 2.0 2.5 2.2 3.1 165 chr3L 16861008 intron,exon Rh4 -,CG13029 + chr3L 16861090 intron,intron Rh4 -,CG13029 + chr3L 16861173 intron,exon Rh4 -,CG13029 + chr3L_10_16860001 chr3L_16860001 RAL-441 1412 chr3L 16866192 16866238 chr3L 16866303 16866344 7 110 0.5 0.0 0.2 5.8 152 chr3L 16866192 intron Lmpt + chr3L 16866268 intron Lmpt + chr3L 16866344 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-441 1413 chr3L 16879814 16879852 chr3L 16879925 16879964 15 105 1.5 1.5 1.5 6.0 150 chr3L 16879814 intron Lmpt + chr3L 16879889 intron Lmpt + chr3L 16879964 intron Lmpt + chr3L_15_16875001 chr3L_16875001 RAL-441 1414 chr3L 16886885 16886931 chr3L 16886981 16887027 8 92 4.5 4.0 4.2 1.5 142 chr3L 16886885 intron Lmpt + chr3L 16886956 intron Lmpt + chr3L 16887027 intron Lmpt + chr3L_8_16885001 chr3L_16885001 RAL-441 1415 chr3L 16945732 16945751 chr3L 16954878 16954891 roo 10 9149 4.5 2.5 3.5 2.2 9159 chr3L 16945732 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954891 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-441 1416 chr3L 16980015 16980053 chr3L 16980232 16980275 7 216 2.5 1.0 1.8 2.5 260 chr3L 16980015 intron Exn + chr3L 16980145 intron Exn + chr3L 16980275 intron Exn + chr3L_7_16980001 chr3L_16980001 RAL-441 1417 chr3L 17026780 17026806 chr3L 17026869 17026906 5 93 7.0 2.5 4.8 0.9 126 chr3L 17026780 exon Fit2 + chr3L 17026843 3` UTR Fit2 + chr3L 17026906 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-441 1418 chr3L 17034926 17034955 chr3L 17035134 17035163 G2 5 208 2.0 1.5 1.8 1.8 237 chr3L 17034926 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035163 intergenic not near genes chr3L_5_17035001 chr3L_17035001 RAL-441 1419 chr3L 17084988 17085031 chr3L 17094156 17094198 roo 13 9168 3.5 5.5 4.5 2.4 9210 chr3L 17084988 intron Rbp6 - chr3L 17089593 intron Rbp6 - chr3L 17094198 intron Rbp6 - chr3L_13_17085001 chr3L_17085001 RAL-441 1420 chr3L 17272241 17272253 chr3L 17272374 17272406 7 147 0.5 4.0 2.2 2.2 165 chr3L 17272241 intergenic not near genes chr3L 17272324 intergenic not near genes chr3L 17272406 intergenic not near genes chr3L_7_17270001 chr3L_17270001 RAL-441 1421 chr3L 17474886 17474939 chr3L 17474983 17475034 10 92 3.5 3.5 3.5 2.2 148 chr3L 17474886 intergenic CG7580 +,CG7589 + chr3L 17474960 intergenic CG7580 +,CG7589 + chr3L 17475034 intergenic CG7580 + chr3L_10_17470001 chr3L_17470001 RAL-441 1422 chr3L 17510718 17510766 chr3L 17510822 17510855 6 99 2.5 3.5 3.0 1.5 137 chr3L 17510718 exon Oatp74D + chr3L 17510786 intron Oatp74D + chr3L 17510855 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-441 1423 chr3L 17516959 17517002 chr3L 17524537 17524579 412 8 7574 6.5 4.5 5.5 1.2 7620 chr3L 17516959 intron CG7564 + chr3L 17520769 intron CG7564 + chr3L 17524579 3` UTR CG7564 + chr3L_8_17520001 chr3L_17520001 RAL-441 1424 chr3L 17594223 17594269 chr3L 17594324 17594370 7 101 1.0 1.5 1.2 3.2 147 chr3L 17594223 intron Eip74EF - chr3L 17594296 intron Eip74EF - chr3L 17594370 intron Eip74EF - chr3L_7_17590001 chr3L_17590001 RAL-441 1425 chr3L 17701170 17701176 chr3L 17701269 17701276 5 100 2.5 6.5 4.5 0.9 106 chr3L 17701170 intron Ccn + chr3L 17701223 intron Ccn + chr3L 17701276 intron Ccn + chr3L_5_17700001 chr3L_17700001 RAL-441 1426 chr3L 17702340 17702383 chr3L 17702441 17702487 13 101 2.0 2.5 2.2 4.1 147 chr3L 17702340 intron Ccn + chr3L 17702414 intron Ccn + chr3L 17702487 intron Ccn + chr3L_13_17700001 chr3L_17700001 RAL-441 1427 chr3L 17743416 17743436 chr3L 17743505 17743528 5 90 4.5 4.5 4.5 0.9 112 chr3L 17743416 intron Ccn + chr3L 17743472 intron Ccn + chr3L 17743528 intron Ccn + chr3L_5_17740001 chr3L_17740001 RAL-441 1428 chr3L 17769076 17769105 chr3L 17769191 17769240 11 132 2.5 5.5 4.0 2.2 164 chr3L 17769076 intergenic not near genes chr3L 17769158 intergenic not near genes chr3L 17769240 intergenic not near genes chr3L_11_17765001 chr3L_17765001 RAL-441 1429 chr3L 17789831 17789872 chr3L 17789927 17789968 8 91 1.0 4.0 2.5 2.3 137 chr3L 17789831 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789968 intergenic not near genes chr3L_8_17785001 chr3L_17785001 RAL-441 1430 chr3L 17799792 17799839 chr3L 17801597 17801637 S-element 6 1799 1.0 2.0 1.5 2.4 1845 chr3L 17799792 intron NUCB1 - chr3L 17800714 intron NUCB1 - chr3L 17801637 intron NUCB1 - chr3L_6_17800001 chr3L_17800001 RAL-441 1431 chr3L 17884674 17884693 chr3L 17884794 17884813 6 120 2.0 0.5 1.2 2.7 139 chr3L 17884674 intergenic CG5506 - chr3L 17884744 intergenic CG5506 - chr3L 17884813 intergenic CG5506 - chr3L_6_17880001 chr3L_17880001 RAL-441 1432 chr3L 17917627 17917636 chr3L 17917907 17917911 7 300 0.0 0.0 0.0 7.0 284 chr3L 17917627 intergenic not near genes chr3L 17917769 intergenic not near genes chr3L 17917911 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-441 1433 chr3L 17918354 17918402 chr3L 17921176 17921225 opus 10 2819 3.0 1.0 2.0 3.3 2871 chr3L 17918354 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921225 intergenic not near genes chr3L_10_17915001 chr3L_17915001 RAL-441 1434 chr3L 17990786 17990797 chr3L 17990888 17990909 4 108 0.0 7.0 3.5 0.9 123 chr3L 17990786 intron Eip75B - chr3L 17990848 intron Eip75B - chr3L 17990909 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-441 1435 chr3L 17991560 17991585 chr3L 17991658 17991683 5 98 8.5 5.5 7.0 0.6 123 chr3L 17991560 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991683 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-441 1436 chr3L 18026242 18026288 chr3L 18026875 18026919 10 633 3.5 2.0 2.8 2.6 677 chr3L 18026242 intron Eip75B - chr3L 18026580 intron Eip75B - chr3L 18026919 intron Eip75B - chr3L_10_18025001 chr3L_18025001 RAL-441 1437 chr3L 18029938 18029983 chr3L 18030035 18030062 6 94 1.0 0.0 0.5 4.0 124 chr3L 18029938 intron Eip75B - chr3L 18030000 intron Eip75B - chr3L 18030062 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-441 1438 chr3L 18047688 18047721 chr3L 18056764 18056797 roo 4 9076 2.0 2.0 2.0 1.3 9109 chr3L 18047688 intron Eip75B - chr3L 18052242 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-441 1439 chr3L 18064050 18064072 chr3L 18064156 18064178 4 106 1.0 1.5 1.2 1.8 128 chr3L 18064050 intron Eip75B - chr3L 18064114 intron Eip75B - chr3L 18064178 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-441 1440 chr3L 18075230 18075248 chr3L 18075515 18075533 5 285 4.5 2.5 3.5 1.1 303 chr3L 18075230 intergenic not near genes chr3L 18075382 intergenic not near genes chr3L 18075533 intergenic not near genes chr3L_5_18075001 chr3L_18075001 RAL-441 1441 chr3L 18175811 18175838 chr3L 18176063 18176079 6 251 2.5 2.5 2.5 1.7 268 chr3L 18175811 intron W - chr3L 18175945 intron W - chr3L 18176079 intron W - chr3L_6_18175001 chr3L_18175001 RAL-441 1442 chr3L 18203580 18203626 chr3L 18203695 18203729 4 109 2.5 0.0 1.2 1.8 149 chr3L 18203580 3` UTR CG7320 + chr3L 18203654 intergenic CG7320 + chr3L 18203729 intergenic CG7320 + chr3L_4_18200001 chr3L_18200001 RAL-441 1443 chr3L 18223144 18223189 chr3L 18223247 18223300 7 105 2.5 0.0 1.2 3.2 156 chr3L 18223144 intergenic not near genes chr3L 18223222 intergenic not near genes chr3L 18223300 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-441 1444 chr3L 18248938 18248985 chr3L 18249056 18249103 17 118 2.0 6.0 4.0 3.4 165 chr3L 18248938 intergenic not near genes chr3L 18249020 intergenic not near genes chr3L 18249103 intergenic not near genes chr3L_17_18245001 chr3L_18245001 RAL-441 1445 chr3L 18257126 18257154 chr3L 18257224 18257251 8 98 3.5 3.0 3.2 1.9 125 chr3L 18257126 intergenic not near genes chr3L 18257188 intergenic not near genes chr3L 18257251 intergenic not near genes chr3L_8_18255001 chr3L_18255001 RAL-441 1446 chr3L 18375966 18375997 chr3L 18376056 18376067 8 95 2.0 1.5 1.8 2.9 101 chr3L 18375966 intergenic not near genes chr3L 18376016 intergenic not near genes chr3L 18376067 intergenic not near genes chr3L_8_18375001 chr3L_18375001 RAL-441 1447 chr3L 18406111 18406153 chr3L 18406207 18406250 8 94 2.0 4.5 3.2 1.9 139 chr3L 18406111 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406250 intergenic not near genes chr3L_8_18405001 chr3L_18405001 RAL-441 1448 chr3L 18408717 18408759 chr3L 18408823 18408864 4 99 3.0 0.5 1.8 1.4 147 chr3L 18408717 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408864 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-441 1449 chr3L 18456253 18456295 chr3L 18456361 18456403 15 106 4.0 2.5 3.2 3.6 150 chr3L 18456253 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456403 3` UTR CR44670 - chr3L_15_18455001 chr3L_18455001 RAL-441 1450 chr3L 18473071 18473104 chr3L 18473187 18473221 9 114 2.5 3.0 2.8 2.4 150 chr3L 18473071 intergenic not near genes chr3L 18473146 intergenic not near genes chr3L 18473221 intergenic not near genes chr3L_9_18470001 chr3L_18470001 RAL-441 1451 chr3L 18485672 18485714 chr3L 18485779 18485821 4 106 2.0 1.0 1.5 1.6 149 chr3L 18485672 3` UTR AstC-R2 - chr3L 18485746 3` UTR AstC-R2 - chr3L 18485821 3` UTR AstC-R2 - chr3L_4_18485001 chr3L_18485001 RAL-441 1452 chr3L 18506109 18506153 chr3L 18509595 18509625 F-element 10 3489 4.0 3.5 3.8 2.1 3516 chr3L 18506109 intergenic not near genes chr3L 18507867 intergenic not near genes chr3L 18509625 intergenic not near genes chr3L_10_18505001 chr3L_18505001 RAL-441 1453 chr3L 18514878 18514907 chr3L 18520091 18520121 BS 8 5214 5.0 3.5 4.2 1.5 5243 chr3L 18514878 intergenic not near genes chr3L 18517500 intergenic not near genes chr3L 18520121 intergenic not near genes chr3L_8_18515001 chr3L_18515001 RAL-441 1454 chr3L 18528609 18528658 chr3L 18537790 18537810 roo 6 9172 2.0 1.5 1.8 2.1 9201 chr3L 18528609 intergenic not near genes chr3L 18533210 intergenic not near genes chr3L 18537810 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-441 1455 chr3L 18581348 18581359 chr3L 18581438 18581453 4 94 2.5 2.5 2.5 1.1 105 chr3L 18581348 intergenic not near genes chr3L 18581400 intergenic not near genes chr3L 18581453 intergenic not near genes chr3L_4_18580001 chr3L_18580001 RAL-441 1456 chr3L 18593929 18593964 chr3L 18595926 18595962 Doc 4 1992 2.0 0.0 1.0 2.0 2033 chr3L 18593929 intergenic term - chr3L 18594946 intergenic not near genes chr3L 18595962 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-441 1457 chr3L 18634610 18634660 chr3L 18634713 18634754 20 101 3.5 3.5 3.5 4.4 144 chr3L 18634610 intron MYPT-75D + chr3L 18634682 intron MYPT-75D + chr3L 18634754 intron MYPT-75D + chr3L_20_18630001 chr3L_18630001 RAL-441 1458 chr3L 18649630 18649641 chr3L 18650013 18650022 4 380 5.0 6.0 5.5 0.6 392 chr3L 18649630 intron MYPT-75D + chr3L 18649826 intron MYPT-75D + chr3L 18650022 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-441 1459 chr3L 18710780 18710791 chr3L 18718750 18718761 Stalker2 4 7970 2.5 1.5 2.0 1.3 7981 chr3L 18710780 intergenic not near genes chr3L 18714770 intergenic not near genes chr3L 18718761 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-441 1460 chr3L 18721765 18721790 chr3L 18721876 18721901 10 108 3.5 2.5 3.0 2.5 136 chr3L 18721765 intergenic CG12477 - chr3L 18721833 intergenic CG12477 - chr3L 18721901 3` UTR CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-441 1461 chr3L 18736037 18736058 chr3L 18736152 18736173 4 115 2.5 5.0 3.8 0.8 136 chr3L 18736037 intergenic not near genes chr3L 18736105 intergenic not near genes chr3L 18736173 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-441 1462 chr3L 18772393 18772436 chr3L 18781094 18781096 roo 16 8698 5.5 7.5 6.5 2.1 8703 chr3L 18772393 intron ftz-f1 - chr3L 18776744 intron ftz-f1 - chr3L 18781096 intron ftz-f1 - chr3L_16_18775001 chr3L_18775001 RAL-441 1463 chr3L 18810129 18810166 chr3L 18810225 18810263 6 97 4.0 2.0 3.0 1.5 134 chr3L 18810129 intron CG14073 - chr3L 18810196 intron CG14073 - chr3L 18810263 intron CG14073 - chr3L_6_18810001 chr3L_18810001 RAL-441 1464 chr3L 18833775 18833812 chr3L 18834941 18834979 1360 15 1172 3.5 2.5 3.0 3.8 1204 chr3L 18833775 intron Indy - chr3L 18834377 intron Indy - chr3L 18834979 intron Indy - chr3L_15_18830001 chr3L_18830001 RAL-441 1465 chr3L 18836354 18836408 chr3L 18836457 18836511 7 99 1.0 2.5 1.8 2.5 157 chr3L 18836354 intron Indy - chr3L 18836432 intron Indy - chr3L 18836511 intron Indy - chr3L_7_18835001 chr3L_18835001 RAL-441 1466 chr3L 18839724 18839768 chr3L 18839827 18839871 10 99 3.0 4.0 3.5 2.2 147 chr3L 18839724 intron Indy - chr3L 18839798 intron Indy - chr3L 18839871 intron Indy - chr3L_10_18835001 chr3L_18835001 RAL-441 1467 chr3L 18861767 18861796 chr3L 18861861 18861886 9 99 3.0 4.0 3.5 2.0 119 chr3L 18861767 intergenic not near genes chr3L 18861826 intergenic not near genes chr3L 18861886 intergenic not near genes chr3L_9_18860001 chr3L_18860001 RAL-441 1468 chr3L 18885998 18886008 chr3L 18886094 18886103 4 96 0.5 1.0 0.8 2.2 105 chr3L 18885998 intron CG3961 - chr3L 18886050 intron CG3961 - chr3L 18886103 intron CG3961 - chr3L_4_18885001 chr3L_18885001 RAL-441 1469 chr3L 18888413 18888465 chr3L 18888515 18888567 12 100 3.0 2.0 2.5 3.4 154 chr3L 18888413 intron CG3961 - chr3L 18888490 intron CG3961 - chr3L 18888567 intron CG3961 - chr3L_12_18885001 chr3L_18885001 RAL-441 1470 chr3L 18933613 18933619 chr3L 18933727 18933733 4 114 6.0 2.0 4.0 0.8 120 chr3L 18933613 intron CG32204 - chr3L 18933673 intron CG32204 - chr3L 18933733 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-441 1471 chr3L 18933628 18933656 chr3L 18933721 18933766 9 103 1.5 1.5 1.5 3.6 138 chr3L 18933628 intron CG32204 - chr3L 18933697 intron CG32204 - chr3L 18933766 intron CG32204 - chr3L_9_18930001 chr3L_18930001 RAL-441 1472 chr3L 18935829 18935862 chr3L 18935938 18935965 5 106 2.5 3.5 3.0 1.2 136 chr3L 18935829 intron CG32204 - chr3L 18935897 intron CG32204 - chr3L 18935965 intron CG32204 - chr3L_5_18935001 chr3L_18935001 RAL-441 1473 chr3L 18948867 18948909 chr3L 18949112 18949155 12 244 2.0 4.5 3.2 2.9 288 chr3L 18948867 intergenic not near genes chr3L 18949011 intergenic not near genes chr3L 18949155 intergenic not near genes chr3L_12_18945001 chr3L_18945001 RAL-441 1474 chr3L 19008829 19008854 chr3L 19009187 19009211 jockey 4 358 4.5 4.0 4.2 0.8 382 chr3L 19008829 intron nkd - chr3L 19009020 intron nkd - chr3L 19009211 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-441 1475 chr3L 19008858 19008867 chr3L 19009185 19009225 jockey 4 350 3.5 3.0 3.2 1.0 367 chr3L 19008858 intron nkd - chr3L 19009042 intron nkd - chr3L 19009225 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-441 1476 chr3L 19009982 19010007 chr3L 19010109 19010156 5 144 4.5 2.0 3.2 1.2 174 chr3L 19009982 intron nkd - chr3L 19010069 intron nkd - chr3L 19010156 intron nkd - chr3L_5_19010001 chr3L_19010001 RAL-441 1477 chr3L 19025920 19025950 chr3L 19026022 19026047 10 99 7.5 0.0 3.8 2.1 127 chr3L 19025920 intron nkd - chr3L 19025984 intron nkd - chr3L 19026047 intron nkd - chr3L_10_19025001 chr3L_19025001 RAL-441 1478 chr3L 19033153 19033202 chr3L 19033274 19033325 13 116 1.0 4.0 2.5 3.7 172 chr3L 19033153 intron nkd - chr3L 19033239 intron nkd - chr3L 19033325 intron nkd - chr3L_13_19030001 chr3L_19030001 RAL-441 1479 chr3L 19111272 19111323 chr3L 19111375 19111396 13 97 5.0 5.0 5.0 2.2 124 chr3L 19111272 intron CG14082 - chr3L 19111334 intron CG14082 - chr3L 19111396 intron CG14082 - chr3L_13_19110001 chr3L_19110001 RAL-441 1480 chr3L 19115635 19115661 chr3L 19115816 19115828 BS 7 177 7.5 2.5 5.0 1.2 193 chr3L 19115635 intron CG14082 - chr3L 19115732 intron CG14082 - chr3L 19115828 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-441 1481 chr3L 19117022 19117069 chr3L 19124489 19124506 mdg1 9 7450 6.5 5.5 6.0 1.3 7484 chr3L 19117022 intron CG14082 - chr3L 19120764 intron CG14082 - chr3L 19124506 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-441 1482 chr3L 19182371 19182420 chr3L 19182471 19182517 11 100 2.0 3.0 2.5 3.1 146 chr3L 19182371 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182517 intron fz2 - chr3L_11_19180001 chr3L_19180001 RAL-441 1483 chr3L 19208050 19208060 chr3L 19209439 19209453 Doc 6 1390 8.0 3.0 5.5 0.9 1403 chr3L 19208050 intron fz2 - chr3L 19208752 intron fz2 - chr3L 19209453 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-441 1484 chr3L 19208072 19208092 chr3L 19209433 19209463 Doc 6 1371 3.0 2.0 2.5 1.7 1391 chr3L 19208072 intron fz2 - chr3L 19208768 intron fz2 - chr3L 19209463 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-441 1485 chr3L 19220633 19220633 chr3L 22908066 22908067 5 3687434 18.0 21.5 19.8 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-441 1486 chr3L 19220635 19220637 chr3L 22908066 22908066 6 3687430 17.5 21.5 19.5 0.3 3687431 chr3L 19220635 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-441 1487 chr3L 19228384 19228434 chr3L 19228496 19228528 16 110 4.0 4.0 4.0 3.2 144 chr3L 19228384 intron fz2 - chr3L 19228456 intron fz2 - chr3L 19228528 intron fz2 - chr3L_16_19225001 chr3L_19225001 RAL-441 1488 chr3L 19231334 19231385 chr3L 19231441 19231484 10 104 2.5 4.5 3.5 2.2 150 chr3L 19231334 intron fz2 - chr3L 19231409 intron fz2 - chr3L 19231484 intron fz2 - chr3L_10_19230001 chr3L_19230001 RAL-441 1489 chr3L 19248834 19248865 chr3L 19248944 19248974 7 108 4.5 2.0 3.2 1.7 140 chr3L 19248834 intergenic not near genes chr3L 19248904 intergenic not near genes chr3L 19248974 intergenic not near genes chr3L_7_19245001 chr3L_19245001 RAL-441 1490 chr3L 19269817 19269844 chr3L 19270023 19270037 4 202 5.0 4.5 4.8 0.7 220 chr3L 19269817 intron,exon CG14085 +,CG14088 - chr3L 19269927 intron,exon CG14085 +,CG14088 - chr3L 19270037 intron,exon CG14085 +,CG14088 - chr3L_4_19265001 chr3L_19265001 RAL-441 1491 chr3L 19285871 19285908 chr3L 19285967 19286004 4 95 2.0 1.5 1.8 1.4 133 chr3L 19285871 intron Gbs-76A - chr3L 19285938 intron Gbs-76A - chr3L 19286004 intron Gbs-76A - chr3L_4_19285001 chr3L_19285001 RAL-441 1492 chr3L 19335724 19335773 chr3L 19335831 19335880 12 106 4.0 4.5 4.2 2.3 156 chr3L 19335724 intron pip - chr3L 19335802 intron pip - chr3L 19335880 intron pip - chr3L_12_19335001 chr3L_19335001 RAL-441 1493 chr3L 19338347 19338405 chr3L 19338462 19338517 8 112 0.0 2.0 1.0 4.0 170 chr3L 19338347 intergenic not near genes chr3L 19338432 intergenic not near genes chr3L 19338517 intergenic not near genes chr3L_8_19335001 chr3L_19335001 RAL-441 1494 chr3L 19342749 19342767 chr3L 19342860 19342878 4 111 2.0 2.5 2.2 1.2 129 chr3L 19342749 3` UTR CG32206 - chr3L 19342814 3` UTR CG32206 - chr3L 19342878 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-441 1495 chr3L 19488482 19488498 chr3L 19488557 19488600 7 91 5.5 3.0 4.2 1.3 118 chr3L 19488482 intergenic pncr009:3L -,CG32212 + chr3L 19488541 intergenic pncr009:3L -,CG32212 + chr3L 19488600 intergenic pncr009:3L -,CG32212 + chr3L_7_19485001 chr3L_19485001 RAL-441 1496 chr3L 19544217 19544229 chr3L 19544313 19544322 6 95 2.5 1.0 1.8 2.1 105 chr3L 19544217 intergenic CG9279 -,l(3)76BDr - chr3L 19544270 intergenic l(3)76BDr -,CG9279 - chr3L 19544322 intergenic l(3)76BDr -,CG9279 - chr3L_6_19540001 chr3L_19540001 RAL-441 1497 chr3L 19544230 19544259 chr3L 19544311 19544355 5 92 0.5 1.0 0.8 2.8 125 chr3L 19544230 intergenic CG9279 -,l(3)76BDr - chr3L 19544292 intergenic l(3)76BDr -,CG9279 - chr3L 19544355 3` UTR l(3)76BDr - chr3L_5_19540001 chr3L_19540001 RAL-441 1498 chr3L 19554823 19554847 chr3L 19554937 19554961 5 114 1.5 3.5 2.5 1.4 138 chr3L 19554823 intergenic CG9300 + chr3L 19554892 intergenic CG9300 + chr3L 19554961 intergenic CG9300 + chr3L_5_19550001 chr3L_19550001 RAL-441 1499 chr3L 19576362 19576390 chr3L 19576459 19576487 12 97 2.5 1.5 2.0 4.0 125 chr3L 19576362 intron Shal - chr3L 19576424 intron Shal - chr3L 19576487 intron Shal - chr3L_12_19575001 chr3L_19575001 RAL-441 1500 chr3L 19820292 19820319 chr3L 19827861 19827888 412 6 7566 2.5 5.5 4.0 1.2 7596 chr3L 19820292 intron Deaf1 + chr3L 19824090 intron Deaf1 + chr3L 19827888 intron Deaf1 + chr3L_6_19820001 chr3L_19820001 RAL-441 1501 chr3L 19848509 19848532 chr3L 19857693 19857694 roo 7 9195 2.5 3.0 2.8 1.8 9185 chr3L 19848509 intron Papss + chr3L 19853102 intron Papss + chr3L 19857694 intron Papss + chr3L_7_19850001 chr3L_19850001 RAL-441 1502 chr3L 19861803 19861848 chr3L 19863610 19863656 S-element 6 1806 4.5 3.5 4.0 1.2 1853 chr3L 19861803 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863656 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-441 1503 chr3L 19961271 19961306 chr3L 19961496 19961537 11 229 6.0 2.0 4.0 2.2 266 chr3L 19961271 intron Ac76E + chr3L 19961404 intron Ac76E + chr3L 19961537 intron Ac76E + chr3L_11_19960001 chr3L_19960001 RAL-441 1504 chr3L 19981194 19981235 chr3L 19981291 19981335 11 96 3.0 2.5 2.8 2.9 141 chr3L 19981194 intergenic CG17732 + chr3L 19981264 intergenic CG17732 + chr3L 19981335 intergenic CG17732 + chr3L_11_19980001 chr3L_19980001 RAL-441 1505 chr3L 20081727 20081767 chr3L 20081830 20081832 10 96 0.5 1.0 0.8 5.6 105 chr3L 20081727 intron sNPF-R - chr3L 20081780 intron sNPF-R - chr3L 20081832 intron sNPF-R - chr3L_10_20080001 chr3L_20080001 RAL-441 1506 chr3L 20096094 20096119 chr3L 20096189 20096235 4 102 4.0 0.5 2.2 1.2 141 chr3L 20096094 intergenic not near genes chr3L 20096164 intergenic not near genes chr3L 20096235 intergenic not near genes chr3L_4_20095001 chr3L_20095001 RAL-441 1507 chr3L 20113463 20113511 chr3L 20113576 20113622 15 110 1.0 2.5 1.8 5.4 159 chr3L 20113463 intergenic not near genes chr3L 20113542 intergenic not near genes chr3L 20113622 intergenic not near genes chr3L_15_20110001 chr3L_20110001 RAL-441 1508 chr3L 20113647 20113677 chr3L 20122924 20122954 roo 6 9277 1.5 4.5 3.0 1.5 9307 chr3L 20113647 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122954 intergenic not near genes chr3L_6_20115001 chr3L_20115001 RAL-441 1509 chr3L 20143067 20143114 chr3L 20143167 20143214 16 98 2.0 6.0 4.0 3.2 147 chr3L 20143067 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143214 intergenic not near genes chr3L_16_20140001 chr3L_20140001 RAL-441 1510 chr3L 20148267 20148300 chr3L 20148377 20148409 10 104 4.0 5.5 4.8 1.7 142 chr3L 20148267 intergenic not near genes chr3L 20148338 intergenic not near genes chr3L 20148409 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-441 1511 chr3L 20231129 20231167 chr3L 20231280 20231317 5 150 3.0 2.0 2.5 1.4 188 chr3L 20231129 intergenic not near genes chr3L 20231223 intergenic CG13813 + chr3L 20231317 intergenic CG13813 + chr3L_5_20230001 chr3L_20230001 RAL-441 1512 chr3L 20256638 20256666 chr3L 20256768 20256796 5 126 2.5 5.0 3.8 1.0 158 chr3L 20256638 exon rdgC + chr3L 20256717 intron rdgC + chr3L 20256796 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-441 1513 chr3L 20264309 20264331 chr3L 20264414 20264436 5 105 2.5 5.0 3.8 1.0 127 chr3L 20264309 3` UTR rdgC + chr3L 20264372 3` UTR rdgC + chr3L 20264436 3` UTR rdgC + chr3L_5_20260001 chr3L_20260001 RAL-441 1514 chr3L 20386918 20386971 chr3L 20387040 20387090 13 120 3.0 2.5 2.8 3.4 172 chr3L 20386918 intron fbl + chr3L 20387004 intron fbl + chr3L 20387090 intron fbl + chr3L_13_20385001 chr3L_20385001 RAL-441 1515 chr3L 20431576 20431623 chr3L 20431742 20431796 15 170 1.0 4.5 2.8 3.9 220 chr3L 20431576 exon Las - chr3L 20431686 intron Las - chr3L 20431796 intron Las - chr3L_15_20430001 chr3L_20430001 RAL-441 1516 chr3L 20476735 20476784 chr3L 20484354 20484382 springer 16 7614 2.5 6.0 4.2 3.1 7647 chr3L 20476735 3` UTR isoQC + chr3L 20480558 intergenic not near genes chr3L 20484382 3` UTR ZnT77C - chr3L_16_20480001 chr3L_20480001 RAL-441 1517 chr3L 20490742 20490764 chr3L 20490907 20490920 6 163 1.0 2.5 1.8 2.1 178 chr3L 20490742 intron ZnT77C - chr3L 20490831 intron ZnT77C - chr3L 20490920 intron ZnT77C - chr3L_6_20490001 chr3L_20490001 RAL-441 1518 chr3L 20499365 20499417 chr3L 20499505 20499556 9 136 3.0 2.0 2.5 2.6 191 chr3L 20499365 intron CG32425 + chr3L 20499460 intron CG32425 + chr3L 20499556 intron CG32425 + chr3L_9_20495001 chr3L_20495001 RAL-441 1519 chr3L 20548348 20548386 chr3L 20548457 20548495 10 108 4.0 4.0 4.0 2.0 147 chr3L 20548348 intergenic not near genes chr3L 20548422 intergenic not near genes chr3L 20548495 intergenic not near genes chr3L_10_20545001 chr3L_20545001 RAL-441 1520 chr3L 20590055 20590074 chr3L 20590611 20590616 412 6 551 7.0 6.5 6.8 0.8 561 chr3L 20590055 intergenic not near genes chr3L 20590336 intergenic not near genes chr3L 20590616 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-441 1521 chr3L 20752117 20752138 chr3L 20752202 20752235 4 90 5.5 7.5 6.5 0.5 118 chr3L 20752117 intergenic not near genes chr3L 20752176 intergenic not near genes chr3L 20752235 intergenic not near genes chr3L_4_20750001 chr3L_20750001 RAL-441 1522 chr3L 20821280 20821308 chr3L 20824768 20824791 NOF 7 3486 5.0 5.5 5.2 1.1 3511 chr3L 20821280 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824791 intron Pka-R1 + chr3L_7_20820001 chr3L_20820001 RAL-441 1523 chr3L 20863365 20863398 chr3L 20863465 20863498 16 97 5.0 5.5 5.2 2.6 133 chr3L 20863365 intron CG32432 - chr3L 20863432 intron CG32432 - chr3L 20863498 intron CG32432 - chr3L_16_20860001 chr3L_20860001 RAL-441 1524 chr3L 20890895 20890939 chr3L 20891015 20891019 7 108 5.0 4.0 4.5 1.3 124 chr3L 20890895 intergenic not near genes chr3L 20890957 intergenic not near genes chr3L 20891019 intergenic not near genes chr3L_7_20890001 chr3L_20890001 RAL-441 1525 chr3L 20913765 20913773 chr3L 20913829 20913862 6 90 3.0 4.5 3.8 1.2 97 chr3L 20913765 intergenic CR43930 - chr3L 20913814 intergenic CR43930 - chr3L 20913862 intergenic CR43930 - chr3L_6_20910001 chr3L_20910001 RAL-441 1526 chr3L 20917075 20917121 chr3L 20917172 20917218 9 95 1.0 7.0 4.0 1.8 143 chr3L 20917075 intergenic not near genes chr3L 20917146 intergenic not near genes chr3L 20917218 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-441 1527 chr3L 20931781 20931831 chr3L 20931883 20931932 4 102 1.0 1.5 1.2 1.8 151 chr3L 20931781 intron fng - chr3L 20931856 intron fng - chr3L 20931932 intron fng - chr3L_4_20930001 chr3L_20930001 RAL-441 1528 chr3L 20948649 20948700 chr3L 20948760 20948778 15 100 3.0 3.0 3.0 3.8 129 chr3L 20948649 intron fng - chr3L 20948714 intron fng - chr3L 20948778 intron fng - chr3L_15_20945001 chr3L_20945001 RAL-441 1529 chr3L 21010637 21010679 chr3L 21010727 21010780 9 96 1.0 2.5 1.8 3.2 143 chr3L 21010637 intron skd - chr3L 21010708 intron skd - chr3L 21010780 intron skd - chr3L_9_21010001 chr3L_21010001 RAL-441 1530 chr3L 21014910 21014946 chr3L 21023403 21023417 Tirant 10 8491 3.0 5.5 4.2 1.9 8507 chr3L 21014910 intron skd - chr3L 21019164 intron skd - chr3L 21023417 intron skd - chr3L_10_21015001 chr3L_21015001 RAL-441 1531 chr3L 21035432 21035483 chr3L 21035529 21035568 20 95 4.5 1.5 3.0 5.0 136 chr3L 21035432 intron siz + chr3L 21035500 intron siz + chr3L 21035568 intron siz + chr3L_20_21035001 chr3L_21035001 RAL-441 1532 chr3L 21065455 21065510 chr3L 21065563 21065618 12 108 2.5 2.0 2.2 3.8 163 chr3L 21065455 intron siz + chr3L 21065536 intron siz + chr3L 21065618 intron siz + chr3L_12_21065001 chr3L_21065001 RAL-441 1533 chr3L 21151856 21151892 chr3L 21156959 21156995 flea 10 5103 4.0 4.0 4.0 2.0 5139 chr3L 21151856 intron Ac78C - chr3L 21154426 intron Ac78C - chr3L 21156995 intron Ac78C - chr3L_10_21150001 chr3L_21150001 RAL-441 1534 chr3L 21186690 21186731 chr3L 21187013 21187054 16 321 4.0 4.5 4.2 3.1 364 chr3L 21186690 intron CG42337 - chr3L 21186872 intron CG42337 - chr3L 21187054 intron CG42337 - chr3L_16_21185001 chr3L_21185001 RAL-441 1535 chr3L 21186732 21186735 chr3L 21187011 21187054 6 315 3.5 4.5 4.0 1.2 322 chr3L 21186732 intron CG42337 - chr3L 21186893 intron CG42337 - chr3L 21187054 intron CG42337 - chr3L_6_21185001 chr3L_21185001 RAL-441 1536 chr3L 21232785 21232838 chr3L 21232933 21232949 15 144 3.0 4.5 3.8 3.1 164 chr3L 21232785 intron Eip78C + chr3L 21232867 intron Eip78C + chr3L 21232949 intron Eip78C + chr3L_15_21230001 chr3L_21230001 RAL-441 1537 chr3L 21306133 21306173 chr3L 21315310 21315350 roo 7 9178 1.5 1.0 1.2 3.2 9217 chr3L 21306133 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315350 3` UTR Pc - chr3L_7_21310001 chr3L_21310001 RAL-441 1538 chr3L 21406985 21407026 chr3L 21407073 21407114 10 88 4.5 3.0 3.8 2.1 129 chr3L 21406985 intron rgn + chr3L 21407050 intron rgn + chr3L 21407114 intron rgn + chr3L_10_21405001 chr3L_21405001 RAL-441 1539 chr3L 21412166 21412217 chr3L 21412287 21412338 11 119 3.0 4.0 3.5 2.4 172 chr3L 21412166 intron rgn + chr3L 21412252 intron rgn + chr3L 21412338 intron rgn + chr3L_11_21410001 chr3L_21410001 RAL-441 1540 chr3L 21414520 21414526 chr3L 21414612 21414621 4 94 6.0 3.5 4.8 0.7 101 chr3L 21414520 intron rgn + chr3L 21414570 intron rgn + chr3L 21414621 intron rgn + chr3L_4_21410001 chr3L_21410001 RAL-441 1541 chr3L 21415433 21415481 chr3L 21415527 21415563 13 88 4.5 3.5 4.0 2.6 130 chr3L 21415433 intron rgn + chr3L 21415498 intron rgn + chr3L 21415563 intron rgn + chr3L_13_21415001 chr3L_21415001 RAL-441 1542 chr3L 4341331 4341333 chr3L 21448027 21448027 4 17106695 18.5 17.5 18.0 0.2 17106696 chr3L 4341331 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-441 1543 chr3L 21459846 21459873 chr3L 21459943 21459971 7 95 1.5 2.5 2.0 2.3 125 chr3L 21459846 intergenic not near genes chr3L 21459908 intergenic not near genes chr3L 21459971 intergenic not near genes chr3L_7_21455001 chr3L_21455001 RAL-441 1544 chr3L 21498828 21498849 chr3L 21500480 21500502 1360 4 1654 10.5 3.5 7.0 0.5 1674 chr3L 21498828 5` UTR,intron CR43933 +,Glg1 - chr3L 21499665 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-441 1545 chr3L 21498852 21498869 chr3L 21500476 21500528 1360 4 1631 6.0 3.5 4.8 0.7 1676 chr3L 21498852 intron Glg1 - chr3L 21499690 intron Glg1 - chr3L 21500528 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-441 1546 chr3L 21584130 21584180 chr3L 21584262 21584313 12 128 2.0 1.0 1.5 4.8 183 chr3L 21584130 intergenic not near genes chr3L 21584222 intergenic not near genes chr3L 21584313 intergenic not near genes chr3L_12_21580001 chr3L_21580001 RAL-441 1547 chr3L 21649760 21649801 chr3L 21650003 21650045 12 243 2.0 3.5 2.8 3.2 285 chr3L 21649760 intron CG43980 + chr3L 21649902 intron CG43980 + chr3L 21650045 intron CG43980 + chr3L_12_21645001 chr3L_21645001 RAL-441 1548 chr3L 21650904 21650943 chr3L 21651096 21651139 13 192 1.0 3.5 2.2 4.1 235 chr3L 21650904 intron CG43980 + chr3L 21651022 intron CG43980 + chr3L 21651139 intron CG43980 + chr3L_13_21650001 chr3L_21650001 RAL-441 1549 chr3L 21749305 21749311 chr3L 21754485 21754491 Doc 4 5180 5.0 5.5 5.2 0.6 5186 chr3L 21749305 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754491 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-441 1550 chr3L 21749320 21749340 chr3L 21754477 21754490 Doc 5 5152 4.5 4.5 4.5 0.9 5170 chr3L 21749320 intron Syn1 - chr3L 21751905 intron Syn1 - chr3L 21754490 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-441 1551 chr3L 21769041 21769072 chr3L 21769148 21769179 5 107 1.5 2.5 2.0 1.7 138 chr3L 21769041 intron,intron Syn1 -,CG42689 + chr3L 21769110 intron,intron Syn1 -,CG42689 + chr3L 21769179 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-441 1552 chr3L 21852238 21852277 chr3L 21852350 21852371 11 97 5.0 5.0 5.0 1.8 133 chr3L 21852238 intron mub + chr3L 21852304 intron mub + chr3L 21852371 intron mub + chr3L_11_21850001 chr3L_21850001 RAL-441 1553 chr3L 21872412 21872455 chr3L 21872509 21872554 10 99 3.5 3.5 3.5 2.2 142 chr3L 21872412 intron mub + chr3L 21872483 intron mub + chr3L 21872554 intron mub + chr3L_10_21870001 chr3L_21870001 RAL-441 1554 chr3L 21942978 21943020 chr3L 21943088 21943131 15 107 3.0 5.5 4.2 2.9 153 chr3L 21942978 intron CG14562 + chr3L 21943054 intron CG14562 + chr3L 21943131 intron CG14562 + chr3L_15_21940001 chr3L_21940001 RAL-441 1555 chr3L 21970500 21970550 chr3L 21970706 21970759 22 207 0.5 4.5 2.5 6.3 259 chr3L 21970500 intergenic not near genes chr3L 21970630 intergenic not near genes chr3L 21970759 intergenic not near genes chr3L_22_21970001 chr3L_21970001 RAL-441 1556 chr3L 21991834 21991845 chr3L 21991980 21991991 5 146 1.0 1.5 1.2 2.3 157 chr3L 21991834 intergenic not near genes chr3L 21991912 intergenic not near genes chr3L 21991991 intergenic not near genes chr3L_5_21990001 chr3L_21990001 RAL-441 1557 chr3L 22099668 22099699 chr3L 22105862 22105874 3S18 6 6190 4.5 3.5 4.0 1.2 6206 chr3L 22099668 intergenic not near genes chr3L 22102771 intergenic not near genes chr3L 22105874 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-441 1558 chr3L 22114777 22114810 chr3L 22114875 22114908 6 98 1.5 5.5 3.5 1.3 131 chr3L 22114777 intergenic not near genes chr3L 22114842 intergenic not near genes chr3L 22114908 intergenic not near genes chr3L_6_22110001 chr3L_22110001 RAL-441 1559 chr3L 22207328 22207361 chr3L 22207439 22207451 11 106 7.0 1.0 4.0 2.2 123 chr3L 22207328 intron olf413 + chr3L 22207390 intron olf413 + chr3L 22207451 intron olf413 + chr3L_11_22205001 chr3L_22205001 RAL-441 1560 chr3L 22333028 22333066 chr3L 22333129 22333165 9 91 4.0 5.0 4.5 1.6 137 chr3L 22333028 intron Ten-m - chr3L 22333096 intron Ten-m - chr3L 22333165 intron Ten-m - chr3L_9_22330001 chr3L_22330001 RAL-441 1561 chr3L 22447178 22447231 chr3L 22447289 22447325 13 109 3.0 2.5 2.8 3.4 147 chr3L 22447178 intergenic not near genes chr3L 22447252 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_13_22445001 chr3L_22445001 RAL-441 1562 chr3L 22507138 22507151 chr3L 22507215 22507244 5 95 2.0 6.5 4.2 1.0 106 chr3L 22507138 intergenic not near genes chr3L 22507191 intergenic not near genes chr3L 22507244 intergenic not near genes chr3L_5_22505001 chr3L_22505001 RAL-441 1563 chr3L 22542889 22542914 chr3L 22543003 22543053 5 131 2.5 3.5 3.0 1.2 164 chr3L 22542889 intergenic not near genes chr3L 22542971 intergenic not near genes chr3L 22543053 intergenic not near genes chr3L_5_22540001 chr3L_22540001 RAL-441 1564 chr3L 22544386 22544417 chr3L 22544482 22544514 7 94 3.5 8.0 5.8 1.0 128 chr3L 22544386 intergenic not near genes chr3L 22544450 intergenic not near genes chr3L 22544514 intergenic not near genes chr3L_7_22540001 chr3L_22540001 RAL-441 1565 chr3L 22554410 22554454 chr3L 22554501 22554550 13 91 3.5 6.5 5.0 2.2 140 chr3L 22554410 intergenic not near genes chr3L 22554480 intergenic not near genes chr3L 22554550 intergenic not near genes chr3L_13_22550001 chr3L_22550001 RAL-441 1566 chr3L 22555749 22555769 chr3L 22563239 22563259 blood 6 7487 11.5 1.0 6.2 0.8 7510 chr3L 22555749 intergenic not near genes chr3L 22559504 intergenic not near genes chr3L 22563259 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-441 1567 chr3L 22569584 22569603 chr3L 22569673 22569718 10 112 1.5 4.5 3.0 2.5 134 chr3L 22569584 intergenic not near genes chr3L 22569651 intergenic not near genes chr3L 22569718 intergenic not near genes chr3L_10_22565001 chr3L_22565001 RAL-441 1568 chr3L 22577608 22577647 chr3L 22582414 22582426 Doc 14 4799 4.5 2.5 3.5 3.1 4818 chr3L 22577608 intergenic not near genes chr3L 22580017 intergenic not near genes chr3L 22582426 3` UTR CG14459 - chr3L_14_22580001 chr3L_22580001 RAL-441 1569 chr3L 22617168 22617222 chr3L 22624640 22624694 blood 15 7468 3.0 4.0 3.5 3.3 7526 chr3L 22617168 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624694 intron CG14459 - chr3L_15_22620001 chr3L_22620001 RAL-441 1570 chr3L 22732449 22732494 chr3L 22732550 22732589 9 96 3.5 3.5 3.5 2.0 140 chr3L 22732449 intron CG11367 + chr3L 22732519 intron CG11367 + chr3L 22732589 exon CG11367 + chr3L_9_22730001 chr3L_22730001 RAL-441 1571 chr3L 22756378 22756432 chr3L 22756475 22756509 19 91 5.5 7.5 6.5 2.5 131 chr3L 22756378 intron SPoCk + chr3L 22756444 intron SPoCk + chr3L 22756509 intron SPoCk + chr3L_19_22755001 chr3L_22755001 RAL-441 1572 chr3L 22761406 22761421 chr3L 22766824 22766831 Ivk 4 5434 2.5 3.5 3.0 1.0 5425 chr3L 22761406 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766831 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-441 1573 chr3L 22838568 22838616 chr3L 22838669 22838711 10 90 7.5 4.0 5.8 1.5 143 chr3L 22838568 intergenic CG11226 + chr3L 22838640 intergenic CG11226 + chr3L 22838711 intergenic not near genes chr3L_10_22835001 chr3L_22835001 RAL-441 1574 chr3L 22853446 22853720 chr3L 22853552 22853826 25 101 1.5 9.0 5.2 4.0 380 chr3L 22853446 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853826 5` UTR CR43426 + chr3L_25_22850001 chr3L_22850001 RAL-441 1575 chr3L 22865973 22866009 chr3L 22867126 22867162 Doc 12 1153 3.0 3.5 3.2 2.9 1189 chr3L 22865973 intron CG33170 + chr3L 22866568 intron CG33170 + chr3L 22867162 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-441 1576 chr3L 19220632 19220637 chr3L 22908066 22908066 10 3687432 17.5 21.5 19.5 0.5 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-441 1577 chr3L 19220632 19220637 chr3L 22908067 22908067 7 3687433 17.5 21.5 19.5 0.3 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-441 1578 chr3L 22985872 22985920 chr3L 22985969 22986021 12 99 4.0 2.0 3.0 3.0 149 chr3L 22985872 intergenic not near genes chr3L 22985946 intergenic not near genes chr3L 22986021 intergenic not near genes chr3L_12_22985001 chr3L_22985001 RAL-441 1579 chr3L 22989851 22989865 chr3L 22996843 22996859 297 4 6992 8.0 2.0 5.0 0.7 7008 chr3L 22989851 intergenic not near genes chr3L 22993355 intergenic not near genes chr3L 22996859 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-441 1580 chr3L 23012292 23012333 chr3L 23012392 23012433 11 97 2.5 5.0 3.8 2.3 141 chr3L 23012292 intron nrm + chr3L 23012362 intron nrm + chr3L 23012433 intron nrm + chr3L_11_23010001 chr3L_23010001 RAL-441 1581 chr3L 23182820 23182851 chr3L 23182915 23182942 9 90 1.0 5.5 3.2 2.1 122 chr3L 23182820 intron CG34031 + chr3L 23182881 intron CG34031 + chr3L 23182942 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-441 1582 chr3L 23253314 23253367 chr3L 23253419 23253465 8 99 2.5 3.5 3.0 2.0 151 chr3L 23253314 intron nAChRalpha4 + chr3L 23253390 intron nAChRalpha4 + chr3L 23253465 intron nAChRalpha4 + chr3L_8_23250001 chr3L_23250001 RAL-441 1583 chr3L 23253662 23253696 chr3L 23254108 23254142 4 444 2.0 2.5 2.2 1.2 480 chr3L 23253662 intron nAChRalpha4 + chr3L 23253902 intron nAChRalpha4 + chr3L 23254142 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-441 1584 chr3L 23665516 23665528 chr3L 23665626 23665628 gypsy8 4 108 22.5 27.5 25.0 0.2 112 chr3L 23665516 intron AGO3 + chr3L 23665572 intron AGO3 + chr3L 23665628 intron AGO3 + chr3L_4_23665001 chr3L_23665001 RAL-441 1585 chr3L 23824005 23824036 chr3L 23824438 23824465 8 429 4.0 3.0 3.5 1.8 460 chr3L 23824005 intergenic not near genes chr3L 23824235 intergenic not near genes chr3L 23824465 intergenic not near genes chr3L_8_23820001 chr3L_23820001 RAL-441 1586 chr3L 24012392 24012432 chr3L 24020747 24020792 roo 10 8356 1.5 2.5 2.0 3.3 8400 chr3L 24012392 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020792 intergenic not near genes chr3L_10_24015001 chr3L_24015001 RAL-441 1587 chr3L 24021258 24021310 chr3L 24022435 24022472 1360 10 1168 5.0 2.5 3.8 2.1 1214 chr3L 24021258 intergenic not near genes chr3L 24021865 intergenic not near genes chr3L 24022472 intergenic not near genes chr3L_10_24020001 chr3L_24020001 RAL-441 1588 chr3L 24152769 24152822 chr3L 24153187 24153210 9 418 2.5 2.5 2.5 2.6 441 chr3L 24152769 intron Snap25 + chr3L 24152990 intron Snap25 + chr3L 24153210 intron Snap25 + chr3L_9_24150001 chr3L_24150001 RAL-441 1589 chr3L 24791876 24791899 chr3L 24796675 24796698 Doc 5 4799 3.5 3.5 3.5 1.1 4822 chr3L 24791876 intergenic not near genes chr3L 24794287 intergenic not near genes chr3L 24796698 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-441 1590 chr3L 26694930 26694956 chr3L 26695007 26695056 4 93 3.0 3.0 3.0 1.0 126 chr3L 26694930 intergenic not near genes chr3L 26694993 intergenic not near genes chr3L 26695056 intergenic not near genes chr3L_4_26690001 chr3L_26690001 RAL-441 1591 chr3L 27368871 27368900 chr3L 27369429 27369464 13 560 5.0 3.5 4.2 2.5 593 chr3L 27368871 intron Dbp80 + chr3L 27369168 intron Dbp80 + chr3L 27369464 intron Dbp80 + chr3L_13_27365001 chr3L_27365001 RAL-441 1592 chr3L 27390699 27390708 chr3L 27390772 27390793 4 78 37.0 35.5 36.2 0.1 94 chr3L 27390699 intron Dbp80 + chr3L 27390746 intron Dbp80 + chr3L 27390793 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-441 1593 chr3L 27980677 27980723 chr3L 27985495 27985541 Doc 5 4818 2.5 3.0 2.8 1.3 4864 chr3L 27980677 intron CG17514 - chr3L 27983109 intron CG17514 - chr3L 27985541 intron CG17514 - chr3L_5_27980001 chr3L_27980001 RAL-441 1594 chr3R 97110 97114 chr3R 99846 99850 7 2737 8.0 3.0 5.5 1.1 2740 chr3R 97110 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99850 intergenic not near genes chr3R_7_95001 chr3R_95001 RAL-441 1595 chr3R 1021764 1021816 chr3R 1021999 1022050 15 240 20.5 25.5 23.0 0.6 286 chr3R 1021764 intergenic not near genes chr3R 1021907 intergenic not near genes chr3R 1022050 intergenic not near genes chr3R_15_1020001 chr3R_1020001 RAL-441 1596 chr3R 1521170 1521172 chr3R 1521247 1521274 5 87 10.5 10.5 10.5 0.4 104 chr3R 1521170 intergenic not near genes chr3R 1521222 intergenic not near genes chr3R 1521274 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-441 1597 chr3R 1521173 1521182 chr3R 1521246 1521266 12 97 10.0 10.5 10.2 1.1 93 chr3R 1521173 intergenic not near genes chr3R 1521220 intergenic not near genes chr3R 1521266 intergenic not near genes chr3R_12_1520001 chr3R_1520001 RAL-441 1598 chr3R 1939035 1939068 chr3R 1939149 1939182 8 112 2.0 0.5 1.2 3.6 147 chr3R 1939035 intergenic not near genes chr3R 1939108 intergenic not near genes chr3R 1939182 intergenic not near genes chr3R_8_1935001 chr3R_1935001 RAL-441 1599 chr3R 3178699 3178707 chr3R 3595185 3595211 5 416494 9.5 15.5 12.5 0.4 416512 chr3R 3178699 intron CG42617 - chr3R 3386955 intergenic not near genes chr3R 3595211 intergenic not near genes chr3R_5_3385001 chr3R_3385001 RAL-441 1600 chr3R 3178708 3178713 chr3R 3595184 3595217 8 416498 11.5 15.5 13.5 0.6 416509 chr3R 3178708 intron CG42617 - chr3R 3386962 intergenic not near genes chr3R 3595217 intergenic not near genes chr3R_8_3385001 chr3R_3385001 RAL-441 1601 chr3R 3267259 3267270 chr3R 3267420 3267432 6 163 21.5 24.0 22.8 0.3 173 chr3R 3267259 intergenic not near genes chr3R 3267346 intergenic not near genes chr3R 3267432 intergenic not near genes chr3R_6_3265001 chr3R_3265001 RAL-441 1602 chr3R 3267251 3267274 chr3R 3267436 3267449 7 175 23.0 23.0 23.0 0.3 198 chr3R 3267251 intergenic not near genes chr3R 3267350 intergenic not near genes chr3R 3267449 intergenic not near genes chr3R_7_3265001 chr3R_3265001 RAL-441 1603 chr3R 3584967 3585001 chr3R 3585143 3585177 10 176 3.0 3.0 3.0 2.5 210 chr3R 3584967 intron Parp - chr3R 3585072 exon Parp - chr3R 3585177 exon Parp - chr3R_10_3585001 chr3R_3585001 RAL-441 1604 chr3R 3752720 3752761 chr3R 3752823 3752830 7 92 2.5 1.5 2.0 2.3 110 chr3R 3752720 intergenic CG41128 + chr3R 3752775 intergenic CG41128 + chr3R 3752830 intergenic CG41128 + chr3R_7_3750001 chr3R_3750001 RAL-441 1605 chr3R 4206051 4206088 chr3R 4211646 4211683 mdg3 13 5591 4.5 3.5 4.0 2.6 5632 chr3R 4206051 intron CG14636 - chr3R 4208867 intron CG14636 - chr3R 4211683 intron CG14636 - chr3R_13_4205001 chr3R_4205001 RAL-441 1606 chr3R 4366739 4366783 chr3R 4375142 4375186 roo 7 8401 4.5 2.5 3.5 1.6 8447 chr3R 4366739 3` UTR CG1090 + chr3R 4370962 intergenic not near genes chr3R 4375186 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 RAL-441 1607 chr3R 4408401 4408436 chr3R 4412716 4412760 Juan 10 4321 7.0 4.5 5.8 1.5 4359 chr3R 4408401 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412760 intron CG32944 - chr3R_10_4410001 chr3R_4410001 RAL-441 1608 chr3R 4609535 4609581 chr3R 4610719 4610732 1360 13 1178 6.5 7.5 7.0 1.6 1197 chr3R 4609535 intergenic not near genes chr3R 4610134 intergenic not near genes chr3R 4610732 intergenic not near genes chr3R_13_4610001 chr3R_4610001 RAL-441 1609 chr3R 4647932 4647957 chr3R 4648131 4648177 12 214 2.5 2.0 2.2 3.8 245 chr3R 4647932 exon,3` UTR rpk +,CR44155 - chr3R 4648054 exon,3` UTR rpk +,CR44155 - chr3R 4648177 3` UTR,3` UTR rpk +,CR44155 - chr3R_12_4645001 chr3R_4645001 RAL-441 1610 chr3R 4680695 4680740 chr3R 4680794 4680839 9 97 2.0 1.5 1.8 3.2 144 chr3R 4680695 intron CG43427 + chr3R 4680767 intron CG43427 + chr3R 4680839 intron CG43427 + chr3R_9_4680001 chr3R_4680001 RAL-441 1611 chr3R 4733654 4733703 chr3R 4733798 4733847 11 143 2.5 3.0 2.8 2.9 193 chr3R 4733654 intergenic not near genes chr3R 4733750 intergenic not near genes chr3R 4733847 intergenic not near genes chr3R_11_4730001 chr3R_4730001 RAL-441 1612 chr3R 4759709 4759735 chr3R 4761226 4761249 hopper2 9 1516 7.0 12.5 9.8 0.8 1540 chr3R 4759709 intron,intron atms +,CG44098 - chr3R 4760479 intron,intron atms +,CG44098 - chr3R 4761249 intron,intron atms +,CG44098 - chr3R_9_4760001 chr3R_4760001 RAL-441 1613 chr3R 4769154 4769184 chr3R 4769238 4769282 10 92 4.0 4.5 4.2 1.9 128 chr3R 4769154 intron,intron atms +,CG44098 - chr3R 4769218 intron,intron atms +,CG44098 - chr3R 4769282 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-441 1614 chr3R 4861560 4861593 chr3R 4861646 4861647 9 83 5.0 3.5 4.2 1.7 87 chr3R 4861560 intron opa + chr3R 4861604 intron opa + chr3R 4861647 intron opa + chr3R_9_4860001 chr3R_4860001 RAL-441 1615 chr3R 4887468 4887512 chr3R 4894864 4894869 rover 9 7382 2.5 3.5 3.0 2.2 7401 chr3R 4887468 intergenic not near genes chr3R 4891168 intergenic not near genes chr3R 4894869 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-441 1616 chr3R 4896284 4896297 chr3R 4896397 4896408 5 111 2.5 1.5 2.0 1.7 124 chr3R 4896284 intergenic CR45580 + chr3R 4896346 intergenic CR45580 + chr3R 4896408 intergenic CR45580 + chr3R_5_4895001 chr3R_4895001 RAL-441 1617 chr3R 5045826 5045875 chr3R 5052948 5052997 HMS-Beagle 5 7119 4.5 3.5 4.0 1.0 7171 chr3R 5045826 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052997 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-441 1618 chr3R 5067961 5068011 chr3R 5073498 5073548 mdg3 23 5534 3.0 4.5 3.8 4.8 5587 chr3R 5067961 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073548 intergenic not near genes chr3R_23_5070001 chr3R_5070001 RAL-441 1619 chr3R 5236200 5236245 chr3R 5236348 5236380 9 145 3.5 3.5 3.5 2.0 180 chr3R 5236200 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236290 3` UTR rtp - chr3R 5236380 3` UTR rtp - chr3R_9_5235001 chr3R_5235001 RAL-441 1620 chr3R 5278073 5278090 chr3R 5278172 5278173 4 96 10.5 5.5 8.0 0.4 100 chr3R 5278073 intron mtd - chr3R 5278123 intron mtd - chr3R 5278173 intron mtd - chr3R_4_5275001 chr3R_5275001 RAL-441 1621 chr3R 5278092 5278118 chr3R 5278169 5278218 15 96 5.0 4.5 4.8 2.6 126 chr3R 5278092 intron mtd - chr3R 5278155 intron mtd - chr3R 5278218 intron mtd - chr3R_15_5275001 chr3R_5275001 RAL-441 1622 chr3R 5306143 5306159 chr3R 5306222 5306266 4 98 4.0 6.5 5.2 0.6 123 chr3R 5306143 intron mtd - chr3R 5306204 intron mtd - chr3R 5306266 intron mtd - chr3R_4_5305001 chr3R_5305001 RAL-441 1623 chr3R 5338383 5338426 chr3R 5343578 5343623 Rt1c 16 5195 4.0 5.0 4.5 2.9 5240 chr3R 5338383 intron mtd - chr3R 5341003 intron mtd - chr3R 5343623 intron mtd - chr3R_16_5340001 chr3R_5340001 RAL-441 1624 chr3R 5385977 5385997 chr3R 5386155 5386179 7 181 3.0 5.5 4.2 1.3 202 chr3R 5385977 intron kkv - chr3R 5386078 intron kkv - chr3R 5386179 intron kkv - chr3R_7_5385001 chr3R_5385001 RAL-441 1625 chr3R 5445949 5445978 chr3R 5452428 5452456 Burdock 8 6479 6.0 2.0 4.0 1.6 6507 chr3R 5445949 intron CG14669 + chr3R 5449202 intron CG14669 + chr3R 5452456 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-441 1626 chr3R 5627158 5627179 chr3R 5627561 5627610 4 422 3.0 3.0 3.0 1.0 452 chr3R 5627158 intergenic not near genes chr3R 5627384 intergenic CG31551 + chr3R 5627610 intergenic CG31551 + chr3R_4_5625001 chr3R_5625001 RAL-441 1627 chr3R 5726077 5726115 chr3R 5726257 5726297 5 178 2.0 2.0 2.0 1.7 220 chr3R 5726077 intergenic not near genes chr3R 5726187 intergenic not near genes chr3R 5726297 intergenic not near genes chr3R_5_5725001 chr3R_5725001 RAL-441 1628 chr3R 5745999 5746045 chr3R 5746260 5746302 pogo 15 259 1.5 3.5 2.5 4.3 303 chr3R 5745999 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746302 3` UTR Madm + chr3R_15_5745001 chr3R_5745001 RAL-441 1629 chr3R 5747010 5747025 chr3R 5753221 5753236 diver 4 6210 2.5 5.5 4.0 0.8 6226 chr3R 5747010 intergenic Madm + chr3R 5750123 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-441 1630 chr3R 5772367 5772409 chr3R 5772545 5772587 11 178 1.0 3.5 2.2 3.4 220 chr3R 5772367 intron CG2082 - chr3R 5772477 intron CG2082 - chr3R 5772587 intron CG2082 - chr3R_11_5770001 chr3R_5770001 RAL-441 1631 chr3R 5809101 5809139 chr3R 5809362 5809400 pogo 10 260 1.5 3.5 2.5 2.9 299 chr3R 5809101 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809400 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 RAL-441 1632 chr3R 5822373 5822406 chr3R 5823560 5823593 1360 5 1187 4.0 4.5 4.2 1.0 1220 chr3R 5822373 3` UTR CG2023 - chr3R 5822983 3` UTR CG2023 - chr3R 5823593 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-441 1633 chr3R 5871296 5871320 chr3R 5871423 5871446 8 126 3.5 5.0 4.2 1.5 150 chr3R 5871296 intron CG34113 - chr3R 5871371 intron CG34113 - chr3R 5871446 intron CG34113 - chr3R_8_5870001 chr3R_5870001 RAL-441 1634 chr3R 5871327 5871349 chr3R 5871420 5871467 7 110 0.5 4.5 2.5 2.0 140 chr3R 5871327 intron CG34113 - chr3R 5871397 intron CG34113 - chr3R 5871467 intron CG34113 - chr3R_7_5870001 chr3R_5870001 RAL-441 1635 chr3R 5896958 5896997 chr3R 5897334 5897369 11 372 3.5 4.0 3.8 2.3 411 chr3R 5896958 intron CG34113 - chr3R 5897164 intron CG34113 - chr3R 5897369 intron CG34113 - chr3R_11_5895001 chr3R_5895001 RAL-441 1636 chr3R 5927565 5927572 chr3R 5927808 5927831 pogo 5 255 3.0 4.0 3.5 1.1 266 chr3R 5927565 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-441 1637 chr3R 5927579 5927590 chr3R 5927802 5927820 pogo 4 234 1.5 4.0 2.8 1.1 241 chr3R 5927579 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927820 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-441 1638 chr3R 5942450 5942499 chr3R 5942568 5942605 9 110 1.0 2.0 1.5 3.6 155 chr3R 5942450 intron CG34113 - chr3R 5942528 intron CG34113 - chr3R 5942605 intron CG34113 - chr3R_9_5940001 chr3R_5940001 RAL-441 1639 chr3R 6015565 6015580 chr3R 6015670 6015685 4 105 0.0 8.0 4.0 0.8 120 chr3R 6015565 intergenic not near genes chr3R 6015625 intergenic not near genes chr3R 6015685 intergenic not near genes chr3R_4_6015001 chr3R_6015001 RAL-441 1640 chr3R 6042567 6042601 chr3R 6042684 6042714 4 114 5.0 5.5 5.2 0.6 147 chr3R 6042567 intergenic not near genes chr3R 6042640 intergenic not near genes chr3R 6042714 intergenic not near genes chr3R_4_6040001 chr3R_6040001 RAL-441 1641 chr3R 6158493 6158530 chr3R 6167093 6167114 Tirant 9 8598 6.0 3.5 4.8 1.6 8621 chr3R 6158493 intergenic not near genes chr3R 6162804 intergenic not near genes chr3R 6167114 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-441 1642 chr3R 6175153 6175192 chr3R 6182445 6182478 HMS-Beagle2 5 7284 7.5 4.0 5.8 0.7 7325 chr3R 6175153 intergenic Osi1 + chr3R 6178816 intron CR45194 + chr3R 6182478 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-441 1643 chr3R 6461586 6461605 chr3R 6461686 6461705 4 98 1.5 2.5 2.0 1.3 119 chr3R 6461586 intergenic not near genes chr3R 6461646 intergenic not near genes chr3R 6461705 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-441 1644 chr3R 6510007 6510041 chr3R 6515108 6515135 jockey 4 5099 4.5 2.5 3.5 0.9 5128 chr3R 6510007 intergenic not near genes chr3R 6512571 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-441 1645 chr3R 6519091 6519142 chr3R 6519219 6519273 6 128 4.5 1.0 2.8 1.6 182 chr3R 6519091 intergenic not near genes chr3R 6519182 intergenic not near genes chr3R 6519273 intergenic not near genes chr3R_6_6515001 chr3R_6515001 RAL-441 1646 chr3R 6538189 6538217 chr3R 6538307 6538324 5 115 7.0 3.0 5.0 0.8 135 chr3R 6538189 intron dpr11 - chr3R 6538256 intron dpr11 - chr3R 6538324 exon dpr11 - chr3R_5_6535001 chr3R_6535001 RAL-441 1647 chr3R 6538220 6538224 chr3R 6538304 6538319 5 100 6.0 3.0 4.5 0.9 99 chr3R 6538220 intron dpr11 - chr3R 6538270 intron dpr11 - chr3R 6538319 exon dpr11 - chr3R_5_6535001 chr3R_6535001 RAL-441 1648 chr3R 6550321 6550352 chr3R 6550407 6550452 12 90 1.0 4.0 2.5 3.4 131 chr3R 6550321 intron dpr11 - chr3R 6550386 intron dpr11 - chr3R 6550452 intron dpr11 - chr3R_12_6550001 chr3R_6550001 RAL-441 1649 chr3R 6551098 6551142 chr3R 6551212 6551256 11 113 3.5 6.0 4.8 1.9 158 chr3R 6551098 intron dpr11 - chr3R 6551177 intron dpr11 - chr3R 6551256 intron dpr11 - chr3R_11_6550001 chr3R_6550001 RAL-441 1650 chr3R 6561938 6561972 chr3R 6562041 6562076 4 104 2.5 3.0 2.8 1.1 138 chr3R 6561938 intron dpr11 - chr3R 6562007 intron dpr11 - chr3R 6562076 intron dpr11 - chr3R_4_6560001 chr3R_6560001 RAL-441 1651 chr3R 6624240 6624265 chr3R 6624342 6624367 10 102 4.0 2.0 3.0 2.5 127 chr3R 6624240 intergenic not near genes chr3R 6624304 intergenic not near genes chr3R 6624367 intergenic not near genes chr3R_10_6620001 chr3R_6620001 RAL-441 1652 chr3R 6639905 6639925 chr3R 6639988 6639998 9 86 3.0 0.0 1.5 3.6 93 chr3R 6639905 intergenic not near genes chr3R 6639952 intergenic not near genes chr3R 6639998 intergenic not near genes chr3R_9_6635001 chr3R_6635001 RAL-441 1653 chr3R 6705672 6705711 chr3R 6705916 6705930 8 239 1.0 3.5 2.2 2.5 258 chr3R 6705672 intergenic not near genes chr3R 6705801 intergenic not near genes chr3R 6705930 intergenic not near genes chr3R_8_6705001 chr3R_6705001 RAL-441 1654 chr3R 6737483 6737515 chr3R 6739288 6739310 Doc 7 1800 5.0 3.0 4.0 1.4 1827 chr3R 6737483 intron pb - chr3R 6738396 intron pb - chr3R 6739310 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-441 1655 chr3R 6737517 6737529 chr3R 6739287 6739313 Doc 5 1790 2.5 3.0 2.8 1.3 1796 chr3R 6737517 intron pb - chr3R 6738415 intron pb - chr3R 6739313 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-441 1656 chr3R 6805004 6805050 chr3R 6805100 6805147 13 93 2.5 3.0 2.8 3.4 143 chr3R 6805004 intergenic not near genes chr3R 6805076 intergenic not near genes chr3R 6805147 intergenic not near genes chr3R_13_6805001 chr3R_6805001 RAL-441 1657 chr3R 6806302 6806313 chr3R 6806368 6806420 5 90 1.0 4.5 2.8 1.3 118 chr3R 6806302 intergenic not near genes chr3R 6806361 intergenic not near genes chr3R 6806420 intergenic not near genes chr3R_5_6805001 chr3R_6805001 RAL-441 1658 chr3R 6807594 6807626 chr3R 6807913 6807945 5 318 2.0 2.5 2.2 1.6 351 chr3R 6807594 intergenic not near genes chr3R 6807770 intergenic not near genes chr3R 6807945 intergenic not near genes chr3R_5_6805001 chr3R_6805001 RAL-441 1659 chr3R 6812211 6812247 chr3R 6812411 6812412 5 188 4.5 5.5 5.0 0.8 201 chr3R 6812211 intron CR42651 - chr3R 6812312 intron CR42651 - chr3R 6812412 intron CR42651 - chr3R_5_6810001 chr3R_6810001 RAL-441 1660 chr3R 6836615 6836661 chr3R 6836738 6836784 15 120 3.5 3.5 3.5 3.3 169 chr3R 6836615 intron Scr - chr3R 6836700 intron Scr - chr3R 6836784 intron Scr - chr3R_15_6835001 chr3R_6835001 RAL-441 1661 chr3R 6862202 6862249 chr3R 6862308 6862355 11 105 0.5 2.0 1.2 5.0 153 chr3R 6862202 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862355 intergenic not near genes chr3R_11_6860001 chr3R_6860001 RAL-441 1662 chr3R 6918041 6918093 chr3R 6918137 6918191 12 95 1.0 4.0 2.5 3.4 150 chr3R 6918041 intron Antp - chr3R 6918116 intron Antp - chr3R 6918191 intron Antp - chr3R_12_6915001 chr3R_6915001 RAL-441 1663 chr3R 7017568 7017614 chr3R 7017676 7017704 7 105 4.0 1.0 2.5 2.0 136 chr3R 7017568 intergenic not near genes chr3R 7017636 intergenic not near genes chr3R 7017704 intergenic not near genes chr3R_7_7015001 chr3R_7015001 RAL-441 1664 chr3R 7026854 7026877 chr3R 7026939 7026964 5 92 5.5 2.0 3.8 1.0 110 chr3R 7026854 intergenic not near genes chr3R 7026909 intergenic not near genes chr3R 7026964 intergenic not near genes chr3R_5_7025001 chr3R_7025001 RAL-441 1665 chr3R 7103274 7103295 chr3R 7103370 7103370 6 92 6.0 6.5 6.2 0.8 96 chr3R 7103274 intron Alh - chr3R 7103322 intron Alh - chr3R 7103370 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-441 1666 chr3R 7210574 7210618 chr3R 7210671 7210688 6 97 0.0 3.0 1.5 2.4 114 chr3R 7210574 intergenic not near genes chr3R 7210631 intergenic not near genes chr3R 7210688 intergenic not near genes chr3R_6_7210001 chr3R_7210001 RAL-441 1667 chr3R 7372991 7373016 chr3R 7373089 7373095 4 92 5.0 4.5 4.8 0.7 104 chr3R 7372991 intergenic not near genes chr3R 7373043 intergenic not near genes chr3R 7373095 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-441 1668 chr3R 7385585 7385612 chr3R 7385660 7385694 8 72 2.0 2.0 2.0 2.7 109 chr3R 7385585 intergenic not near genes chr3R 7385640 intergenic not near genes chr3R 7385694 intergenic not near genes chr3R_8_7385001 chr3R_7385001 RAL-441 1669 chr3R 7447971 7448004 chr3R 7448069 7448102 4 98 5.0 5.0 5.0 0.7 131 chr3R 7447971 intergenic not near genes chr3R 7448036 intergenic not near genes chr3R 7448102 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-441 1670 chr3R 7464670 7464723 chr3R 7464776 7464828 14 102 3.0 6.5 4.8 2.4 158 chr3R 7464670 intergenic not near genes chr3R 7464749 intergenic not near genes chr3R 7464828 intergenic not near genes chr3R_14_7460001 chr3R_7460001 RAL-441 1671 chr3R 7492577 7492626 chr3R 7492674 7492720 5 96 1.5 4.0 2.8 1.3 143 chr3R 7492577 intron alpha-Est10 - chr3R 7492648 intron alpha-Est10 - chr3R 7492720 intron alpha-Est10 - chr3R_5_7490001 chr3R_7490001 RAL-441 1672 chr3R 7556936 7556964 chr3R 7557028 7557077 12 106 1.0 3.5 2.2 3.8 141 chr3R 7556936 intergenic not near genes chr3R 7557006 intergenic not near genes chr3R 7557077 intergenic not near genes chr3R_12_7555001 chr3R_7555001 RAL-441 1673 chr3R 7617978 7618018 chr3R 7618086 7618130 6 110 0.5 2.5 1.5 2.4 152 chr3R 7617978 intron CG34127 - chr3R 7618054 intron CG34127 - chr3R 7618130 intron CG34127 - chr3R_6_7615001 chr3R_7615001 RAL-441 1674 chr3R 7677905 7677943 chr3R 7678038 7678049 7 123 2.0 5.5 3.8 1.5 144 chr3R 7677905 intron Nlg1 + chr3R 7677977 intron Nlg1 + chr3R 7678049 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-441 1675 chr3R 7729458 7729497 chr3R 7737414 7737435 Stalker2 15 7954 2.0 4.5 3.2 3.6 7977 chr3R 7729458 intergenic not near genes chr3R 7733446 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_15_7730001 chr3R_7730001 RAL-441 1676 chr3R 7760237 7760282 chr3R 7760766 7760811 8 517 5.5 7.0 6.2 1.1 574 chr3R 7760237 intron Sp7 + chr3R 7760524 intron Sp7 + chr3R 7760811 5` UTR Sp7 + chr3R_8_7760001 chr3R_7760001 RAL-441 1677 chr3R 7775893 7775951 chr3R 7775994 7776047 6 97 1.5 3.0 2.2 1.9 154 chr3R 7775893 intergenic not near genes chr3R 7775970 intergenic not near genes chr3R 7776047 intergenic not near genes chr3R_6_7775001 chr3R_7775001 RAL-441 1678 chr3R 7973304 7973341 chr3R 7974386 7974421 1360 10 1082 4.5 6.5 5.5 1.5 1117 chr3R 7973304 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974421 3` UTR CD98hc - chr3R_10_7970001 chr3R_7970001 RAL-441 1679 chr3R 8003269 8003304 chr3R 8003520 8003573 9 256 4.0 1.5 2.8 2.4 304 chr3R 8003269 exon CG2698 + chr3R 8003421 exon CG2698 + chr3R 8003573 exon CG2698 + chr3R_9_8000001 chr3R_8000001 RAL-441 1680 chr3R 8056131 8056182 chr3R 8056299 8056331 11 159 1.5 4.0 2.8 2.9 200 chr3R 8056131 intergenic CG43060 + chr3R 8056231 intergenic CG43060 + chr3R 8056331 intergenic CG43060 + chr3R_11_8055001 chr3R_8055001 RAL-441 1681 chr3R 8090548 8090560 chr3R 8094045 8094055 297 4 3496 3.5 9.5 6.5 0.5 3507 chr3R 8090548 intergenic CR44330 + chr3R 8092302 intergenic not near genes chr3R 8094055 intergenic CG7900 + chr3R_4_8090001 chr3R_8090001 RAL-441 1682 chr3R 8094390 8094435 chr3R 8099715 8099760 Transpac 9 5325 3.5 7.5 5.5 1.4 5370 chr3R 8094390 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099760 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-441 1683 chr3R 8101757 8101790 chr3R 8104858 8104882 G2 7 3096 1.5 1.5 1.5 2.8 3125 chr3R 8101757 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104882 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-441 1684 chr3R 8255517 8255533 chr3R 8255597 8255606 6 80 3.0 5.0 4.0 1.2 89 chr3R 8255517 intron mtg + chr3R 8255562 intron mtg + chr3R 8255606 intron mtg + chr3R_6_8255001 chr3R_8255001 RAL-441 1685 chr3R 8273715 8273760 chr3R 8273822 8273867 12 103 4.0 2.5 3.2 2.9 152 chr3R 8273715 intergenic not near genes chr3R 8273791 intergenic not near genes chr3R 8273867 intergenic not near genes chr3R_12_8270001 chr3R_8270001 RAL-441 1686 chr3R 8304228 8304270 chr3R 8304344 8304386 9 114 4.0 3.0 3.5 2.0 158 chr3R 8304228 3` UTR Sgt1 - chr3R 8304307 3` UTR Sgt1 - chr3R 8304386 3` UTR Sgt1 - chr3R_9_8300001 chr3R_8300001 RAL-441 1687 chr3R 8339246 8339246 chr3R 21907535 21907536 4 13568289 14.0 20.0 17.0 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-441 1688 chr3R 8393551 8393603 chr3R 8393655 8393688 7 88 1.5 3.5 2.5 2.0 137 chr3R 8393551 intron CG45263 - chr3R 8393620 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_7_8390001 chr3R_8390001 RAL-441 1689 chr3R 8402996 8403025 chr3R 8412177 8412208 roo 10 9180 6.0 2.5 4.2 1.9 9212 chr3R 8402996 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412208 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-441 1690 chr3R 8418684 8418697 chr3R 8418775 8418811 11 103 5.5 4.5 5.0 1.8 127 chr3R 8418684 intron CG45263 - chr3R 8418748 intron CG45263 - chr3R 8418811 intron CG45263 - chr3R_11_8415001 chr3R_8415001 RAL-441 1691 chr3R 8450501 8450525 chr3R 8450768 8450791 4 265 2.5 4.5 3.5 0.9 290 chr3R 8450501 intron CG45263 - chr3R 8450646 intron CG45263 - chr3R 8450791 intron CG45263 - chr3R_4_8450001 chr3R_8450001 RAL-441 1692 chr3R 8478095 8478106 chr3R 8478160 8478178 7 85 1.0 4.0 2.5 2.0 83 chr3R 8478095 intergenic CG45263 - chr3R 8478136 intergenic not near genes chr3R 8478178 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-441 1693 chr3R 8570458 8570506 chr3R 8575114 8575162 HMS-Beagle 9 4654 7.0 8.5 7.8 1.0 4704 chr3R 8570458 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575162 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-441 1694 chr3R 8601772 8601794 chr3R 8610925 8610965 roo 5 9168 6.0 7.0 6.5 0.7 9193 chr3R 8601772 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610965 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-441 1695 chr3R 8612065 8612098 chr3R 8612164 8612196 5 96 3.0 2.0 2.5 1.4 131 chr3R 8612065 intron 5-HT2B + chr3R 8612130 intron 5-HT2B + chr3R 8612196 intron 5-HT2B + chr3R_5_8610001 chr3R_8610001 RAL-441 1696 chr3R 8621534 8621565 chr3R 8621619 8621632 4 82 4.5 4.0 4.2 0.8 98 chr3R 8621534 intron 5-HT2B + chr3R 8621583 intron 5-HT2B + chr3R 8621632 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-441 1697 chr3R 8685277 8685306 chr3R 8685395 8685426 6 119 4.5 2.5 3.5 1.3 149 chr3R 8685277 intron CR44937 - chr3R 8685352 intron CR44937 - chr3R 8685426 intron CR44937 - chr3R_6_8685001 chr3R_8685001 RAL-441 1698 chr3R 8745732 8745776 chr3R 8745859 8745907 10 125 4.5 3.0 3.8 2.1 175 chr3R 8745732 intron CG9801 - chr3R 8745820 intron CG9801 - chr3R 8745907 intron CG9801 - chr3R_10_8745001 chr3R_8745001 RAL-441 1699 chr3R 8917876 8917908 chr3R 8917976 8918008 8 99 0.5 4.5 2.5 2.3 132 chr3R 8917876 intron pyd - chr3R 8917942 intron pyd - chr3R 8918008 intron pyd - chr3R_8_8915001 chr3R_8915001 RAL-441 1700 chr3R 9047703 9047737 chr3R 9047786 9047835 14 93 4.5 5.5 5.0 2.3 132 chr3R 9047703 intron,5` UTR Nmdmc -,Rel - chr3R 9047769 intron,5` UTR Nmdmc -,Rel - chr3R 9047835 intron,5` UTR Nmdmc -,Rel - chr3R_14_9045001 chr3R_9045001 RAL-441 1701 chr3R 9108869 9108884 chr3R 9108950 9108979 5 93 6.0 3.5 4.8 0.9 110 chr3R 9108869 intron pum - chr3R 9108924 intron pum - chr3R 9108979 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-441 1702 chr3R 9166520 9166554 chr3R 9166858 9166911 13 354 3.5 6.5 5.0 2.2 391 chr3R 9166520 intron pum - chr3R 9166716 intron pum - chr3R 9166911 intron pum - chr3R_13_9165001 chr3R_9165001 RAL-441 1703 chr3R 9294997 9295034 chr3R 9295095 9295132 6 94 1.5 1.0 1.2 2.7 135 chr3R 9294997 3` UTR CG8861 - chr3R 9295064 3` UTR CG8861 - chr3R 9295132 3` UTR CG8861 - chr3R_6_9295001 chr3R_9295001 RAL-441 1704 chr3R 9296287 9296334 chr3R 9296400 9296425 6 105 19.5 22.5 21.0 0.3 138 chr3R 9296287 intron CG8861 - chr3R 9296356 intron CG8861 - chr3R 9296425 intron CG8861 - chr3R_6_9295001 chr3R_9295001 RAL-441 1705 chr3R 9296180 9296199 chr3R 9296530 9296554 5 354 16.0 32.5 24.2 0.2 374 chr3R 9296180 intron CG8861 - chr3R 9296367 intron CG8861 - chr3R 9296554 intron CG8861 - chr3R_5_9295001 chr3R_9295001 RAL-441 1706 chr3R 9319565 9319585 chr3R 9320020 9320040 jockey 6 455 6.0 3.5 4.8 1.0 475 chr3R 9319565 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320040 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-441 1707 chr3R 9361808 9361839 chr3R 9362069 9362100 pogo 5 261 0.5 2.5 1.5 2.0 292 chr3R 9361808 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362100 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-441 1708 chr3R 9362964 9363007 chr3R 9363068 9363116 6 103 1.5 4.0 2.8 1.6 152 chr3R 9362964 3` UTR CG45050 + chr3R 9363040 intergenic CG45050 +,CG18473 + chr3R 9363116 intergenic CG45050 +,CG18473 + chr3R_6_9360001 chr3R_9360001 RAL-441 1709 chr3R 9526579 9526598 chr3R 9526676 9526694 7 94 4.0 7.0 5.5 1.1 115 chr3R 9526579 exon CG8176 + chr3R 9526636 3` UTR CG8176 + chr3R 9526694 3` UTR CG8176 + chr3R_7_9525001 chr3R_9525001 RAL-441 1710 chr3R 9526602 9526626 chr3R 9526671 9526708 9 86 2.0 4.5 3.2 2.1 106 chr3R 9526602 exon CG8176 + chr3R 9526655 3` UTR CG8176 + chr3R 9526708 3` UTR CG8176 + chr3R_9_9525001 chr3R_9525001 RAL-441 1711 chr3R 9610839 9610869 chr3R 9610998 9611030 5 158 2.0 6.5 4.2 1.0 191 chr3R 9610839 intron CG8312 + chr3R 9610934 intron CG8312 + chr3R 9611030 intron CG8312 + chr3R_5_9610001 chr3R_9610001 RAL-441 1712 chr3R 9647508 9647532 chr3R 9647750 9647798 10 258 5.5 4.0 4.8 1.7 290 chr3R 9647508 intron Dh44 + chr3R 9647653 intron Dh44 + chr3R 9647798 intron Dh44 + chr3R_10_9645001 chr3R_9645001 RAL-441 1713 chr3R 9836868 9836898 chr3R 9836959 9837005 8 101 7.0 6.0 6.5 1.1 137 chr3R 9836868 intron Teh1 - chr3R 9836936 intron Teh1 - chr3R 9837005 intron Teh1 - chr3R_8_9835001 chr3R_9835001 RAL-441 1714 chr3R 9891455 9891478 chr3R 9891612 9891638 7 154 6.0 0.5 3.2 1.7 183 chr3R 9891455 intron Glut4EF + chr3R 9891546 intron Glut4EF + chr3R 9891638 intron Glut4EF + chr3R_7_9890001 chr3R_9890001 RAL-441 1715 chr3R 9898780 9898793 chr3R 9898880 9898905 4 108 9.0 6.5 7.8 0.5 125 chr3R 9898780 intron Glut4EF + chr3R 9898842 intron Glut4EF + chr3R 9898905 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-441 1716 chr3R 9898794 9898816 chr3R 9898879 9898923 10 103 6.5 6.0 6.2 1.4 129 chr3R 9898794 intron Glut4EF + chr3R 9898858 intron Glut4EF + chr3R 9898923 intron Glut4EF + chr3R_10_9895001 chr3R_9895001 RAL-441 1717 chr3R 10073754 10073802 chr3R 10073883 10073931 6 128 2.0 4.0 3.0 1.5 177 chr3R 10073754 3` UTR nerfin-2 + chr3R 10073842 3` UTR CG5361 - chr3R 10073931 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-441 1718 chr3R 10148000 10148053 chr3R 10148163 10148218 12 163 5.5 2.5 4.0 2.4 218 chr3R 10148000 intron Invadolysin + chr3R 10148109 intron Invadolysin + chr3R 10148218 intron Invadolysin + chr3R_12_10145001 chr3R_10145001 RAL-441 1719 chr3R 10220241 10220274 chr3R 10220433 10220437 6 184 6.5 5.5 6.0 0.9 196 chr3R 10220241 3` UTR Syn + chr3R 10220339 3` UTR Syn + chr3R 10220437 3` UTR Syn + chr3R_6_10220001 chr3R_10220001 RAL-441 1720 chr3R 10231763 10231811 chr3R 10237359 10237398 mdg3 11 5592 2.0 2.5 2.2 3.4 5635 chr3R 10231763 intron CG42795 + chr3R 10234580 intron CG42795 + chr3R 10237398 intron CG42795 + chr3R_11_10230001 chr3R_10230001 RAL-441 1721 chr3R 10275557 10275584 chr3R 10275653 10275681 9 96 2.5 8.5 5.5 1.4 124 chr3R 10275557 intron CG43143 + chr3R 10275619 intron CG43143 + chr3R 10275681 intron CG43143 + chr3R_9_10275001 chr3R_10275001 RAL-441 1722 chr3R 10403016 10403062 chr3R 10403114 10403163 7 99 3.0 5.0 4.0 1.4 147 chr3R 10403016 3` UTR CG6325 - chr3R 10403090 3` UTR CG6325 - chr3R 10403163 3` UTR CG6325 - chr3R_7_10400001 chr3R_10400001 RAL-441 1723 chr3R 10427401 10427429 chr3R 10427531 10427559 5 130 9.0 0.0 4.5 0.9 158 chr3R 10427401 intergenic not near genes chr3R 10427480 intergenic not near genes chr3R 10427559 intergenic not near genes chr3R_5_10425001 chr3R_10425001 RAL-441 1724 chr3R 10553844 10553868 chr3R 10553921 10553961 5 94 4.0 5.0 4.5 0.9 117 chr3R 10553844 intron hth - chr3R 10553902 intron hth - chr3R 10553961 intron hth - chr3R_5_10550001 chr3R_10550001 RAL-441 1725 chr3R 10606178 10606227 chr3R 10606273 10606320 16 89 4.0 4.5 4.2 3.1 142 chr3R 10606178 intron hth - chr3R 10606249 intron hth - chr3R 10606320 intron hth - chr3R_16_10605001 chr3R_10605001 RAL-441 1726 chr3R 10727639 10727679 chr3R 10727723 10727763 10 87 3.5 3.5 3.5 2.2 124 chr3R 10727639 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727763 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-441 1727 chr3R 10804165 10804196 chr3R 10811702 10811748 17.6 7 7539 2.0 2.5 2.2 2.2 7583 chr3R 10804165 intergenic CG14692 - chr3R 10807956 intergenic not near genes chr3R 10811748 3` UTR CG14693 - chr3R_7_10805001 chr3R_10805001 RAL-441 1728 chr3R 10817403 10817443 chr3R 10817518 10817557 5 114 11.5 12.5 12.0 0.4 154 chr3R 10817403 3` UTR CG4089 + chr3R 10817480 3` UTR CG4089 + chr3R 10817557 intergenic CG4089 + chr3R_5_10815001 chr3R_10815001 RAL-441 1729 chr3R 10820128 10820151 chr3R 10820247 10820274 10 118 6.0 7.5 6.8 1.3 146 chr3R 10820128 intergenic not near genes chr3R 10820201 intergenic not near genes chr3R 10820274 intergenic not near genes chr3R_10_10820001 chr3R_10820001 RAL-441 1730 chr3R 10844786 10844829 chr3R 10844905 10844954 5 117 0.0 1.5 0.8 2.8 168 chr3R 10844786 intron Cad86C + chr3R 10844870 intron Cad86C + chr3R 10844954 intron Cad86C + chr3R_5_10840001 chr3R_10840001 RAL-441 1731 chr3R 10862868 10862914 chr3R 10862966 10863015 16 99 1.5 4.0 2.8 4.2 147 chr3R 10862868 5` UTR CG6574 - chr3R 10862942 5` UTR CG6574 - chr3R 10863015 intergenic CG6574 -,SelR - chr3R_16_10860001 chr3R_10860001 RAL-441 1732 chr3R 10868580 10868625 chr3R 10868668 10868668 4 66 4.5 3.0 3.8 0.8 88 chr3R 10868580 5` UTR SelR - chr3R 10868624 5` UTR SelR - chr3R 10868668 intergenic SelR -,Tsp86D + chr3R_4_10865001 chr3R_10865001 RAL-441 1733 chr3R 11054577 11054603 chr3R 11054694 11054720 5 117 3.0 5.5 4.2 1.0 143 chr3R 11054577 intergenic not near genes chr3R 11054648 intergenic not near genes chr3R 11054720 intergenic not near genes chr3R_5_11050001 chr3R_11050001 RAL-441 1734 chr3R 11056884 11056899 chr3R 11056978 11056997 6 96 5.5 0.0 2.8 1.6 113 chr3R 11056884 intergenic not near genes chr3R 11056940 intergenic not near genes chr3R 11056997 intergenic not near genes chr3R_6_11055001 chr3R_11055001 RAL-441 1735 chr3R 11059285 11059328 chr3R 11059385 11059426 7 99 2.5 3.0 2.8 1.8 141 chr3R 11059285 intergenic not near genes chr3R 11059356 intergenic not near genes chr3R 11059426 intergenic not near genes chr3R_7_11055001 chr3R_11055001 RAL-441 1736 chr3R 11075779 11075828 chr3R 11075875 11075925 18 92 3.0 3.5 3.2 4.3 146 chr3R 11075779 intergenic not near genes chr3R 11075852 intergenic not near genes chr3R 11075925 intergenic not near genes chr3R_18_11075001 chr3R_11075001 RAL-441 1737 chr3R 11078943 11078979 chr3R 11079043 11079056 10 95 3.5 2.5 3.0 2.5 113 chr3R 11078943 intergenic not near genes chr3R 11079000 intergenic not near genes chr3R 11079056 intergenic not near genes chr3R_10_11075001 chr3R_11075001 RAL-441 1738 chr3R 11100198 11100237 chr3R 11100562 11100601 18 360 6.5 5.5 6.0 2.6 403 chr3R 11100198 intergenic not near genes chr3R 11100400 intergenic not near genes chr3R 11100601 intergenic not near genes chr3R_18_11100001 chr3R_11100001 RAL-441 1739 chr3R 11142501 11142543 chr3R 11142631 11142678 10 127 3.0 2.5 2.8 2.6 177 chr3R 11142501 intergenic not near genes chr3R 11142590 intergenic not near genes chr3R 11142678 intergenic not near genes chr3R_10_11140001 chr3R_11140001 RAL-441 1740 chr3R 11172791 11172818 chr3R 11172902 11172929 9 110 6.5 3.0 4.8 1.6 138 chr3R 11172791 intergenic Ugt35a - chr3R 11172860 intergenic Ugt35a - chr3R 11172929 intergenic Ugt35a - chr3R_9_11170001 chr3R_11170001 RAL-441 1741 chr3R 11174604 11174612 chr3R 11175307 11175343 6 719 21.0 14.0 17.5 0.3 739 chr3R 11174604 exon Ugt86Dj - chr3R 11174974 intron Ugt86Dj - chr3R 11175343 exon Ugt86Dj - chr3R_6_11170001 chr3R_11170001 RAL-441 1742 chr3R 11342521 11342560 chr3R 11342617 11342654 11 95 3.5 1.5 2.5 3.1 133 chr3R 11342521 intron pros + chr3R 11342588 intron pros + chr3R 11342654 intron pros + chr3R_11_11340001 chr3R_11340001 RAL-441 1743 chr3R 11345620 11345646 chr3R 11345739 11345765 6 118 4.5 4.5 4.5 1.1 145 chr3R 11345620 intron pros + chr3R 11345692 intron pros + chr3R 11345765 intron pros + chr3R_6_11345001 chr3R_11345001 RAL-441 1744 chr3R 11345649 11345668 chr3R 11345734 11345787 4 106 3.0 4.0 3.5 0.9 138 chr3R 11345649 intron pros + chr3R 11345718 intron pros + chr3R 11345787 intron pros + chr3R_4_11345001 chr3R_11345001 RAL-441 1745 chr3R 11379218 11379245 chr3R 11388392 11388420 roo 7 9174 6.5 4.5 5.5 1.1 9202 chr3R 11379218 intron pros + chr3R 11383819 intron pros + chr3R 11388420 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-441 1746 chr3R 11476932 11476971 chr3R 11477054 11477092 6 121 3.5 3.0 3.2 1.4 160 chr3R 11476932 intergenic not near genes chr3R 11477012 intergenic not near genes chr3R 11477092 intergenic not near genes chr3R_6_11475001 chr3R_11475001 RAL-441 1747 chr3R 11830335 11830358 chr3R 11830440 11830461 7 104 3.5 4.0 3.8 1.5 126 chr3R 11830335 intron CG6959 - chr3R 11830398 intron CG6959 - chr3R 11830461 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-441 1748 chr3R 11841040 11841099 chr3R 11846251 11846284 BS 10 5198 2.5 2.0 2.2 3.1 5244 chr3R 11841040 intron CG6959 - chr3R 11843662 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_10_11840001 chr3R_11840001 RAL-441 1749 chr3R 11945378 11945405 chr3R 11945492 11945499 8 114 4.0 3.5 3.8 1.7 121 chr3R 11945378 intron Cad87A - chr3R 11945438 intron Cad87A - chr3R 11945499 intron Cad87A - chr3R_8_11945001 chr3R_11945001 RAL-441 1750 chr3R 11957840 11957878 chr3R 11958143 11958150 S-element 5 295 1.0 0.0 0.5 3.3 310 chr3R 11957840 intergenic not near genes chr3R 11957995 intergenic not near genes chr3R 11958150 intergenic not near genes chr3R_5_11955001 chr3R_11955001 RAL-441 1751 chr3R 12022870 12022891 chr3R 12025066 12025086 pogo 9 2194 7.0 4.5 5.8 1.3 2216 chr3R 12022870 intergenic not near genes chr3R 12023978 intergenic not near genes chr3R 12025086 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-441 1752 chr3R 12022894 12022908 chr3R 12025065 12025105 pogo 6 2186 3.5 3.5 3.5 1.3 2211 chr3R 12022894 intergenic not near genes chr3R 12024000 intergenic not near genes chr3R 12025105 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-441 1753 chr3R 12045155 12045158 chr3R 12045251 12045254 4 96 6.5 2.0 4.2 0.8 99 chr3R 12045155 intergenic not near genes chr3R 12045204 intergenic not near genes chr3R 12045254 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-441 1754 chr3R 12045159 12045202 chr3R 12045250 12045297 10 93 2.5 1.5 2.0 3.3 138 chr3R 12045159 intergenic not near genes chr3R 12045228 intergenic not near genes chr3R 12045297 intergenic not near genes chr3R_10_12045001 chr3R_12045001 RAL-441 1755 chr3R 12081989 12082028 chr3R 12082073 12082124 15 91 0.5 1.5 1.0 7.5 135 chr3R 12081989 intron CG14741 - chr3R 12082056 intron CG14741 - chr3R 12082124 intron CG14741 - chr3R_15_12080001 chr3R_12080001 RAL-441 1756 chr3R 12111900 12111923 chr3R 12111968 12111998 14 87 1.0 4.0 2.5 4.0 98 chr3R 12111900 intergenic dpr17 + chr3R 12111949 intergenic not near genes chr3R 12111998 intergenic not near genes chr3R_14_12110001 chr3R_12110001 RAL-441 1757 chr3R 12165859 12165869 chr3R 12165957 12165967 4 98 1.5 3.0 2.2 1.2 108 chr3R 12165859 intron Cpn - chr3R 12165913 intron Cpn - chr3R 12165967 intron Cpn - chr3R_4_12165001 chr3R_12165001 RAL-441 1758 chr3R 12183161 12183206 chr3R 12183263 12183311 18 104 4.5 3.5 4.0 3.6 150 chr3R 12183161 intergenic not near genes chr3R 12183236 intergenic not near genes chr3R 12183311 intergenic not near genes chr3R_18_12180001 chr3R_12180001 RAL-441 1759 chr3R 12247135 12247171 chr3R 12247228 12247272 5 101 4.0 1.5 2.8 1.3 137 chr3R 12247135 intergenic not near genes chr3R 12247204 intergenic not near genes chr3R 12247272 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-441 1760 chr3R 12267838 12267879 chr3R 12267938 12267979 11 96 2.0 2.0 2.0 3.7 141 chr3R 12267838 intron svp + chr3R 12267908 intron svp + chr3R 12267979 intron svp + chr3R_11_12265001 chr3R_12265001 RAL-441 1761 chr3R 12365180 12365232 chr3R 12365406 12365458 12 221 1.0 3.5 2.2 3.8 278 chr3R 12365180 exon GstD10 - chr3R 12365319 exon GstD10 - chr3R 12365458 exon GstD10 - chr3R_12_12365001 chr3R_12365001 RAL-441 1762 chr3R 12392877 12392888 chr3R 12392997 12393008 4 118 7.5 9.5 8.5 0.4 131 chr3R 12392877 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392942 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393008 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-441 1763 chr3R 12546441 12546478 chr3R 12546541 12546581 9 102 5.0 6.5 5.8 1.3 140 chr3R 12546441 intron Octbeta3R - chr3R 12546511 intron Octbeta3R - chr3R 12546581 intron Octbeta3R - chr3R_9_12545001 chr3R_12545001 RAL-441 1764 chr3R 12599367 12599373 chr3R 12599467 12599476 4 102 5.5 6.0 5.8 0.6 109 chr3R 12599367 intergenic not near genes chr3R 12599422 intergenic not near genes chr3R 12599476 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-441 1765 chr3R 12599376 12599405 chr3R 12599455 12599493 6 86 3.0 5.0 4.0 1.2 117 chr3R 12599376 intergenic not near genes chr3R 12599434 intergenic not near genes chr3R 12599493 intergenic not near genes chr3R_6_12595001 chr3R_12595001 RAL-441 1766 chr3R 12628618 12628630 chr3R 12628699 12628718 4 87 7.5 3.5 5.5 0.6 100 chr3R 12628618 intron Snx3 + chr3R 12628668 intron Snx3 + chr3R 12628718 intron Snx3 + chr3R_4_12625001 chr3R_12625001 RAL-441 1767 chr3R 12704826 12704845 chr3R 12704924 12704941 5 98 6.5 3.5 5.0 0.8 115 chr3R 12704826 3` UTR Past1 + chr3R 12704884 intergenic Past1 +,CG12279 + chr3R 12704941 intergenic Past1 +,CG12279 + chr3R_5_12700001 chr3R_12700001 RAL-441 1768 chr3R 12704848 12705044 chr3R 12704923 12705141 14 94 5.0 3.0 4.0 2.8 293 chr3R 12704848 3` UTR Past1 + chr3R 12704994 intergenic CG12279 +,Past1 + chr3R 12705141 5` UTR CG12279 + chr3R_14_12700001 chr3R_12700001 RAL-441 1769 chr3R 12733483 12733507 chr3R 12733563 12733603 10 87 3.5 6.0 4.8 1.7 120 chr3R 12733483 intergenic not near genes chr3R 12733543 intergenic not near genes chr3R 12733603 intergenic not near genes chr3R_10_12730001 chr3R_12730001 RAL-441 1770 chr3R 12769932 12769979 chr3R 12770373 12770403 13 439 6.0 3.0 4.5 2.4 471 chr3R 12769932 intron beat-Vc - chr3R 12770168 intron beat-Vc - chr3R 12770403 intron beat-Vc - chr3R_13_12770001 chr3R_12770001 RAL-441 1771 chr3R 12819022 12819046 chr3R 12819125 12819148 7 102 4.0 5.0 4.5 1.3 126 chr3R 12819022 intergenic not near genes chr3R 12819085 intergenic not near genes chr3R 12819148 intergenic not near genes chr3R_7_12815001 chr3R_12815001 RAL-441 1772 chr3R 12866469 12866513 chr3R 12866640 12866684 18 170 1.5 3.0 2.2 5.6 215 chr3R 12866469 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866684 intergenic not near genes chr3R_18_12865001 chr3R_12865001 RAL-441 1773 chr3R 12870597 12870638 chr3R 12870698 12870737 12 98 3.5 2.0 2.8 3.2 140 chr3R 12870597 intergenic not near genes chr3R 12870667 intergenic not near genes chr3R 12870737 intergenic not near genes chr3R_12_12870001 chr3R_12870001 RAL-441 1774 chr3R 12920153 12920183 chr3R 12925356 12925406 copia 10 5215 1.0 4.0 2.5 2.9 5253 chr3R 12920153 intron beat-Vb + chr3R 12922780 intron beat-Vb + chr3R 12925406 intron beat-Vb + chr3R_10_12920001 chr3R_12920001 RAL-441 1775 chr3R 12947542 12947551 chr3R 12947619 12947651 4 89 1.5 4.5 3.0 1.0 109 chr3R 12947542 intergenic not near genes chr3R 12947596 intergenic not near genes chr3R 12947651 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-441 1776 chr3R 13048304 13048330 chr3R 13052392 13052412 19 4085 71.5 49.5 60.5 0.3 4108 chr3R 13048304 intron CG31157 + chr3R 13050358 exon CG7966 - chr3R 13052412 exon pic + chr3R_19_13050001 chr3R_13050001 RAL-441 1777 chr3R 13048303 13048338 chr3R 13052414 13052435 19 4092 75.0 43.5 59.2 0.3 4132 chr3R 13048303 intron CG31157 + chr3R 13050369 exon CG7966 - chr3R 13052435 exon pic + chr3R_19_13050001 chr3R_13050001 RAL-441 1778 chr3R 13059944 13059963 chr3R 13060159 13060174 4 214 5.0 2.0 3.5 0.9 230 chr3R 13059944 intron sim + chr3R 13060059 intron sim + chr3R 13060174 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-441 1779 chr3R 13073962 13074007 chr3R 13074061 13074063 6 88 2.5 2.0 2.2 1.9 101 chr3R 13073962 intron sim + chr3R 13074012 intron sim + chr3R 13074063 intron sim + chr3R_6_13070001 chr3R_13070001 RAL-441 1780 chr3R 13135807 13135855 chr3R 13138002 13138040 pogo 12 2190 8.0 5.0 6.5 1.6 2233 chr3R 13135807 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136924 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_12_13135001 chr3R_13135001 RAL-441 1781 chr3R 13195937 13195972 chr3R 13196045 13196072 7 106 3.0 3.0 3.0 1.8 135 chr3R 13195937 intergenic not near genes chr3R 13196004 intergenic not near genes chr3R 13196072 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-441 1782 chr3R 13197154 13197201 chr3R 13198454 13198501 9 1298 8.0 18.0 13.0 0.6 1347 chr3R 13197154 intergenic not near genes chr3R 13197828 intergenic not near genes chr3R 13198501 intergenic not near genes chr3R_9_13195001 chr3R_13195001 RAL-441 1783 chr3R 13197028 13197067 chr3R 13198478 13198517 9 1451 10.5 18.5 14.5 0.6 1489 chr3R 13197028 intergenic not near genes chr3R 13197772 intergenic not near genes chr3R 13198517 intergenic not near genes chr3R_9_13195001 chr3R_13195001 RAL-441 1784 chr3R 13252250 13252290 chr3R 13252338 13252358 10 84 2.5 3.0 2.8 2.6 108 chr3R 13252250 intron Ace - chr3R 13252304 intron Ace - chr3R 13252358 intron Ace - chr3R_10_13250001 chr3R_13250001 RAL-441 1785 chr3R 13314074 13314104 chr3R 13318883 13318912 Doc 5 4808 4.0 3.0 3.5 1.1 4838 chr3R 13314074 intergenic not near genes chr3R 13316493 intergenic not near genes chr3R 13318912 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-441 1786 chr3R 13338862 13338909 chr3R 13339236 13339284 5 369 1.0 3.0 2.0 1.7 422 chr3R 13338862 intron PK2-R1 + chr3R 13339073 intron PK2-R1 + chr3R 13339284 intron PK2-R1 + chr3R_5_13335001 chr3R_13335001 RAL-441 1787 chr3R 13351830 13351873 chr3R 13351926 13351936 6 84 2.5 4.0 3.2 1.4 106 chr3R 13351830 intergenic not near genes chr3R 13351883 intergenic not near genes chr3R 13351936 intergenic not near genes chr3R_6_13350001 chr3R_13350001 RAL-441 1788 chr3R 13418646 13418670 chr3R 13418740 13418766 7 95 4.0 2.5 3.2 1.7 120 chr3R 13418646 intergenic not near genes chr3R 13418706 intergenic not near genes chr3R 13418766 intergenic not near genes chr3R_7_13415001 chr3R_13415001 RAL-441 1789 chr3R 13470846 13470875 chr3R 13471178 13471219 5 344 3.5 3.0 3.2 1.2 373 chr3R 13470846 intergenic not near genes chr3R 13471032 intergenic not near genes chr3R 13471219 intergenic not near genes chr3R_5_13470001 chr3R_13470001 RAL-441 1790 chr3R 13584144 13584186 chr3R 13584244 13584286 11 98 2.0 2.5 2.2 3.4 142 chr3R 13584144 intergenic not near genes chr3R 13584215 intergenic not near genes chr3R 13584286 intergenic not near genes chr3R_11_13580001 chr3R_13580001 RAL-441 1791 chr3R 13603044 13603074 chr3R 13603155 13603185 7 111 4.5 3.5 4.0 1.4 141 chr3R 13603044 intergenic not near genes chr3R 13603114 intergenic not near genes chr3R 13603185 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-441 1792 chr3R 13672930 13672969 chr3R 13673017 13673067 19 93 4.5 3.0 3.8 4.0 137 chr3R 13672930 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673067 intron Task6 - chr3R_19_13670001 chr3R_13670001 RAL-441 1793 chr3R 13872781 13872787 chr3R 13873182 13873202 4 404 16.0 8.0 12.0 0.3 421 chr3R 13872781 intron E5 - chr3R 13872992 intron E5 - chr3R 13873202 intron E5 - chr3R_4_13870001 chr3R_13870001 RAL-441 1794 chr3R 13878227 13878274 chr3R 13878341 13878393 12 113 4.0 2.5 3.2 2.9 166 chr3R 13878227 intergenic not near genes chr3R 13878310 intergenic not near genes chr3R 13878393 intergenic not near genes chr3R_12_13875001 chr3R_13875001 RAL-441 1795 chr3R 13988246 13988297 chr3R 13988352 13988403 12 100 6.0 5.0 5.5 1.8 157 chr3R 13988246 intron rdx - chr3R 13988324 intron rdx - chr3R 13988403 intron rdx - chr3R_12_13985001 chr3R_13985001 RAL-441 1796 chr3R 14021630 14021679 chr3R 14023467 14023504 S-element 12 1826 2.0 1.5 1.8 4.3 1874 chr3R 14021630 intron rdx - chr3R 14022567 intron rdx - chr3R 14023504 intron rdx - chr3R_12_14020001 chr3R_14020001 RAL-441 1797 chr3R 14049004 14049040 chr3R 14049100 14049140 6 94 5.0 5.0 5.0 1.0 136 chr3R 14049004 intergenic not near genes chr3R 14049072 intergenic not near genes chr3R 14049140 intergenic not near genes chr3R_6_14045001 chr3R_14045001 RAL-441 1798 chr3R 14058103 14058141 chr3R 14058243 14058281 8 140 3.5 3.0 3.2 1.9 178 chr3R 14058103 5` UTR foxo + chr3R 14058192 intron foxo + chr3R 14058281 intron foxo + chr3R_8_14055001 chr3R_14055001 RAL-441 1799 chr3R 14070120 14070146 chr3R 14070211 14070247 11 97 4.0 6.5 5.2 1.8 127 chr3R 14070120 intron foxo + chr3R 14070184 intron foxo + chr3R 14070247 intron foxo + chr3R_11_14070001 chr3R_14070001 RAL-441 1800 chr3R 14117426 14117469 chr3R 14117522 14117565 7 93 2.5 2.0 2.2 2.2 139 chr3R 14117426 intron Kif19A - chr3R 14117496 intron Kif19A - chr3R 14117565 intron Kif19A - chr3R_7_14115001 chr3R_14115001 RAL-441 1801 chr3R 14180793 14180818 chr3R 14185578 14185588 F-element 6 4782 4.5 0.0 2.2 1.9 4795 chr3R 14180793 intron Dop1R1 - chr3R 14183190 intron Dop1R1 - chr3R 14185588 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-441 1802 chr3R 14194442 14194454 chr3R 14203596 14203607 roo 5 9154 4.5 0.5 2.5 1.4 9165 chr3R 14194442 intron Dop1R1 - chr3R 14199024 intron Dop1R1 - chr3R 14203607 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-441 1803 chr3R 14246398 14246410 chr3R 14247890 14247900 jockey 4 1503 5.0 5.0 5.0 0.7 1502 chr3R 14246398 intergenic not near genes chr3R 14247149 intergenic not near genes chr3R 14247900 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-441 1804 chr3R 14325367 14325417 chr3R 14325476 14325526 14 104 4.5 4.0 4.2 2.7 159 chr3R 14325367 exon Afti - chr3R 14325446 exon Afti - chr3R 14325526 exon Afti - chr3R_14_14325001 chr3R_14325001 RAL-441 1805 chr3R 14400395 14400434 chr3R 14402754 14402788 5 2359 26.5 25.0 25.8 0.2 2393 chr3R 14400395 intron cv-c - chr3R 14401592 intron cv-c - chr3R 14402788 intron cv-c - chr3R_5_14400001 chr3R_14400001 RAL-441 1806 chr3R 14440703 14440755 chr3R 14440798 14440851 11 95 3.0 3.0 3.0 2.8 148 chr3R 14440703 intron cv-c - chr3R 14440777 intron cv-c - chr3R 14440851 intron cv-c - chr3R_11_14440001 chr3R_14440001 RAL-441 1807 chr3R 14549017 14549067 chr3R 14549124 14549131 6 98 1.5 5.5 3.5 1.3 114 chr3R 14549017 intron Pde6 - chr3R 14549074 intron Pde6 - chr3R 14549131 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-441 1808 chr3R 14556580 14556594 chr3R 14556682 14556695 4 102 1.5 1.5 1.5 1.6 115 chr3R 14556580 intron Pde6 - chr3R 14556638 intron Pde6 - chr3R 14556695 intron Pde6 - chr3R_4_14555001 chr3R_14555001 RAL-441 1809 chr3R 14560644 14560692 chr3R 14560858 14560902 17 213 0.5 2.5 1.5 6.8 258 chr3R 14560644 intergenic CG14850 + chr3R 14560773 intergenic CG14850 + chr3R 14560902 intergenic CG14850 + chr3R_17_14560001 chr3R_14560001 RAL-441 1810 chr3R 14577949 14577986 chr3R 14578080 14578122 10 134 2.0 4.0 3.0 2.5 173 chr3R 14577949 intron stumps + chr3R 14578036 intron stumps + chr3R 14578122 intron stumps + chr3R_10_14575001 chr3R_14575001 RAL-441 1811 chr3R 14579342 14579373 chr3R 14579442 14579456 5 102 6.0 2.0 4.0 1.0 114 chr3R 14579342 intron stumps + chr3R 14579399 intron stumps + chr3R 14579456 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-441 1812 chr3R 14608461 14608476 chr3R 14608573 14608588 9 111 1.0 7.5 4.2 1.7 127 chr3R 14608461 intergenic stumps + chr3R 14608524 intergenic stumps + chr3R 14608588 intergenic not near genes chr3R_9_14605001 chr3R_14605001 RAL-441 1813 chr3R 14612433 14612469 chr3R 14612566 14612609 5 138 3.5 0.0 1.8 1.8 176 chr3R 14612433 intron CG14853 + chr3R 14612521 intron CG14853 + chr3R 14612609 intron CG14853 + chr3R_5_14610001 chr3R_14610001 RAL-441 1814 chr3R 14656763 14656817 chr3R 14657260 14657313 19 496 2.5 3.0 2.8 5.0 550 chr3R 14656763 intergenic not near genes chr3R 14657038 intergenic CG3505 + chr3R 14657313 intergenic CG3505 + chr3R_19_14655001 chr3R_14655001 RAL-441 1815 chr3R 14704363 14704380 chr3R 14704460 14704477 4 97 7.0 3.5 5.2 0.6 114 chr3R 14704363 intron kibra - chr3R 14704420 intron kibra - chr3R 14704477 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-441 1816 chr3R 14704381 14704410 chr3R 14704459 14704495 11 89 4.5 3.0 3.8 2.3 114 chr3R 14704381 intron kibra - chr3R 14704438 intron kibra - chr3R 14704495 intron kibra - chr3R_11_14700001 chr3R_14700001 RAL-441 1817 chr3R 14734460 14734476 chr3R 14734573 14734589 4 113 1.0 4.0 2.5 1.1 129 chr3R 14734460 intron eff - chr3R 14734524 intron eff - chr3R 14734589 intron eff - chr3R_4_14730001 chr3R_14730001 RAL-441 1818 chr3R 14869852 14869890 chr3R 14869963 14870001 12 108 3.5 5.0 4.2 2.3 149 chr3R 14869852 intron btsz - chr3R 14869926 intron btsz - chr3R 14870001 intron btsz - chr3R_12_14865001 chr3R_14865001 RAL-441 1819 chr3R 14871797 14871841 chr3R 14871903 14871947 10 103 5.0 4.5 4.8 1.7 150 chr3R 14871797 intron btsz - chr3R 14871872 intron btsz - chr3R 14871947 intron btsz - chr3R_10_14870001 chr3R_14870001 RAL-441 1820 chr3R 14898456 14898496 chr3R 14898596 14898636 10 140 3.5 1.5 2.5 2.9 180 chr3R 14898456 intergenic Nup93-2 -,CG3817 + chr3R 14898546 intergenic Nup93-2 -,CG3817 + chr3R 14898636 intergenic CG3817 +,Nup93-2 - chr3R_10_14895001 chr3R_14895001 RAL-441 1821 chr3R 14971334 14971356 chr3R 14971452 14971471 4 118 3.0 7.0 5.0 0.7 137 chr3R 14971334 intergenic not near genes chr3R 14971402 intergenic not near genes chr3R 14971471 intergenic not near genes chr3R_4_14970001 chr3R_14970001 RAL-441 1822 chr3R 14971359 14971362 chr3R 14971443 14971470 5 102 2.5 4.5 3.5 1.1 111 chr3R 14971359 intergenic not near genes chr3R 14971414 intergenic not near genes chr3R 14971470 intergenic not near genes chr3R_5_14970001 chr3R_14970001 RAL-441 1823 chr3R 15002371 15002407 chr3R 15002487 15002508 7 115 3.5 6.0 4.8 1.2 137 chr3R 15002371 intergenic not near genes chr3R 15002440 intergenic not near genes chr3R 15002508 intergenic not near genes chr3R_7_15000001 chr3R_15000001 RAL-441 1824 chr3R 15041410 15041438 chr3R 15045198 15045226 Doc 4 3788 0.0 7.0 3.5 0.9 3816 chr3R 15041410 intergenic not near genes chr3R 15043318 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-441 1825 chr3R 15079786 15079826 chr3R 15080047 15080087 pogo 6 256 6.0 1.5 3.8 1.2 301 chr3R 15079786 3` UTR CG6966 - chr3R 15079936 3` UTR CG6966 - chr3R 15080087 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-441 1826 chr3R 15114896 15114945 chr3R 15114993 15115009 8 93 4.5 1.5 3.0 2.0 113 chr3R 15114896 intron CG42788 - chr3R 15114952 intron CG42788 - chr3R 15115009 intron CG42788 - chr3R_8_15110001 chr3R_15110001 RAL-441 1827 chr3R 15127763 15127811 chr3R 15127863 15127911 9 100 1.5 0.5 1.0 4.5 148 chr3R 15127763 intron CG42788 - chr3R 15127837 intron CG42788 - chr3R 15127911 intron CG42788 - chr3R_9_15125001 chr3R_15125001 RAL-441 1828 chr3R 15132048 15132058 chr3R 15135128 15135144 Juan 4 3081 19.0 10.5 14.8 0.3 3096 chr3R 15132048 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135144 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-441 1829 chr3R 15132062 15132089 chr3R 15135116 15135175 Juan 14 3077 9.0 7.5 8.2 1.5 3113 chr3R 15132062 intergenic CG42788 - chr3R 15133618 intergenic not near genes chr3R 15135175 3` UTR CG6912 - chr3R_14_15130001 chr3R_15130001 RAL-441 1830 chr3R 15130872 15130878 chr3R 15141217 15141236 7 10345 17.0 22.0 19.5 0.3 10364 chr3R 15130872 intron CG42788 - chr3R 15136054 exon CG6912 - chr3R 15141236 exon CG3987 + chr3R_7_15135001 chr3R_15135001 RAL-441 1831 chr3R 15162547 15162560 chr3R 15167325 15167348 F-element 5 4785 5.5 7.0 6.2 0.7 4801 chr3R 15162547 intron Gyc88E + chr3R 15164948 intron Gyc88E + chr3R 15167348 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-441 1832 chr3R 15190630 15190680 chr3R 15190775 15190825 13 143 4.0 3.5 3.8 2.7 195 chr3R 15190630 3` UTR Gyc88E + chr3R 15190728 3` UTR Gyc88E + chr3R 15190825 3` UTR Gyc88E + chr3R_13_15190001 chr3R_15190001 RAL-441 1833 chr3R 15246908 15246916 chr3R 15247112 15247120 4 204 4.5 3.0 3.8 0.8 212 chr3R 15246908 intergenic CG6499 -,Hsc70-4 + chr3R 15247014 intergenic CG6499 -,Hsc70-4 + chr3R 15247120 intergenic CG6499 - chr3R_4_15245001 chr3R_15245001 RAL-441 1834 chr3R 15246926 15246945 chr3R 15247108 15247148 4 198 1.5 2.5 2.0 1.3 222 chr3R 15246926 intergenic CG6499 -,Hsc70-4 + chr3R 15247037 intergenic CG6499 -,Hsc70-4 + chr3R 15247148 intergenic CG6499 - chr3R_4_15245001 chr3R_15245001 RAL-441 1835 chr3R 15302487 15302533 chr3R 15302585 15302609 12 93 3.5 3.5 3.5 2.7 122 chr3R 15302487 intron Tm1 + chr3R 15302548 intron Tm1 + chr3R 15302609 intron Tm1 + chr3R_12_15300001 chr3R_15300001 RAL-441 1836 chr3R 15416247 15416279 chr3R 15416328 15416379 10 96 3.0 4.5 3.8 2.1 132 chr3R 15416247 3` UTR Atx2 + chr3R 15416313 3` UTR Atx2 + chr3R 15416379 3` UTR Atx2 + chr3R_10_15415001 chr3R_15415001 RAL-441 1837 chr3R 15452255 15452309 chr3R 15452352 15452404 16 95 6.0 4.5 5.2 2.6 149 chr3R 15452255 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452404 intron AdamTS-A - chr3R_16_15450001 chr3R_15450001 RAL-441 1838 chr3R 15464758 15464773 chr3R 15464868 15464870 4 106 6.0 6.5 6.2 0.6 112 chr3R 15464758 intron AdamTS-A - chr3R 15464814 intron AdamTS-A - chr3R 15464870 intron AdamTS-A - chr3R_4_15460001 chr3R_15460001 RAL-441 1839 chr3R 15536655 15536665 chr3R 15536826 15536836 5 170 10.5 4.5 7.5 0.6 181 chr3R 15536655 intron CG18522 - chr3R 15536746 intron CG18522 - chr3R 15536836 intron CG18522 - chr3R_5_15535001 chr3R_15535001 RAL-441 1840 chr3R 15536673 15536702 chr3R 15536825 15536873 7 164 5.0 4.5 4.8 1.2 200 chr3R 15536673 intron CG18522 - chr3R 15536773 intron CG18522 - chr3R 15536873 intron CG18522 - chr3R_7_15535001 chr3R_15535001 RAL-441 1841 chr3R 15601165 15601196 chr3R 15608704 15608732 412 6 7535 6.5 6.0 6.2 0.8 7567 chr3R 15601165 intergenic not near genes chr3R 15604948 intergenic not near genes chr3R 15608732 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-441 1842 chr3R 15610564 15610588 chr3R 15610660 15610684 4 96 0.0 2.0 1.0 2.0 120 chr3R 15610564 intergenic not near genes chr3R 15610624 intergenic not near genes chr3R 15610684 intergenic not near genes chr3R_4_15610001 chr3R_15610001 RAL-441 1843 chr3R 15639340 15639367 chr3R 15639625 15639673 6 294 2.0 5.5 3.8 1.2 333 chr3R 15639340 intergenic not near genes chr3R 15639506 intergenic not near genes chr3R 15639673 intergenic not near genes chr3R_6_15635001 chr3R_15635001 RAL-441 1844 chr3R 15646776 15646797 chr3R 15646879 15646900 7 103 3.0 4.5 3.8 1.5 124 chr3R 15646776 intergenic not near genes chr3R 15646838 intergenic not near genes chr3R 15646900 intergenic not near genes chr3R_7_15645001 chr3R_15645001 RAL-441 1845 chr3R 15670170 15670192 chr3R 15670252 15670267 5 87 8.5 1.0 4.8 0.9 97 chr3R 15670170 intron pxb + chr3R 15670218 intron pxb + chr3R 15670267 intron pxb + chr3R_5_15670001 chr3R_15670001 RAL-441 1846 chr3R 15691163 15691328 chr3R 15691288 15691435 18 112 0.5 0.5 0.5 12.0 272 chr3R 15691163 intergenic not near genes chr3R 15691299 intergenic not near genes chr3R 15691435 intergenic not near genes chr3R_18_15690001 chr3R_15690001 RAL-441 1847 chr3R 15734187 15734200 chr3R 15734263 15734294 5 86 6.5 4.5 5.5 0.8 107 chr3R 15734187 intergenic not near genes chr3R 15734240 intergenic not near genes chr3R 15734294 intergenic not near genes chr3R_5_15730001 chr3R_15730001 RAL-441 1848 chr3R 15777681 15777715 chr3R 15777835 15777867 5 154 0.5 4.5 2.5 1.4 186 chr3R 15777681 intergenic CG4525 + chr3R 15777774 intergenic CG4525 + chr3R 15777867 intergenic CG4525 + chr3R_5_15775001 chr3R_15775001 RAL-441 1849 chr3R 15783720 15783762 chr3R 15784019 15784062 9 299 4.5 7.5 6.0 1.3 342 chr3R 15783720 intergenic not near genes chr3R 15783891 intergenic not near genes chr3R 15784062 intergenic not near genes chr3R_9_15780001 chr3R_15780001 RAL-441 1850 chr3R 15808046 15808097 chr3R 15808161 15808198 11 107 2.0 3.5 2.8 2.9 152 chr3R 15808046 intron alpha-Man-IIb + chr3R 15808122 intron alpha-Man-IIb + chr3R 15808198 intron alpha-Man-IIb + chr3R_11_15805001 chr3R_15805001 RAL-441 1851 chr3R 15813309 15813343 chr3R 15813410 15813448 9 100 8.0 2.5 5.2 1.5 139 chr3R 15813309 intron alpha-Man-IIb + chr3R 15813378 intron alpha-Man-IIb + chr3R 15813448 intron alpha-Man-IIb + chr3R_9_15810001 chr3R_15810001 RAL-441 1852 chr3R 15844088 15844101 chr3R 15844204 15844208 4 112 5.5 1.0 3.2 1.0 120 chr3R 15844088 exon spn-E + chr3R 15844148 3` UTR spn-E + chr3R 15844208 3` UTR spn-E + chr3R_4_15840001 chr3R_15840001 RAL-441 1853 chr3R 16025453 16025490 chr3R 16025575 16025617 6 123 2.5 3.5 3.0 1.5 164 chr3R 16025453 intergenic not near genes chr3R 16025535 intergenic not near genes chr3R 16025617 intergenic pnr + chr3R_6_16025001 chr3R_16025001 RAL-441 1854 chr3R 16167807 16167833 chr3R 16167922 16167947 5 114 1.5 4.5 3.0 1.2 140 chr3R 16167807 intron CG6006 + chr3R 16167877 intron CG6006 + chr3R 16167947 exon CG6006 + chr3R_5_16165001 chr3R_16165001 RAL-441 1855 chr3R 16215087 16215129 chr3R 16215212 16215254 5 125 0.5 3.0 1.8 1.8 167 chr3R 16215087 intergenic CR45641 + chr3R 16215170 intergenic CR45641 + chr3R 16215254 intergenic CR45641 + chr3R_5_16215001 chr3R_16215001 RAL-441 1856 chr3R 16246525 16246553 chr3R 16246621 16246647 5 96 0.0 8.5 4.2 1.0 122 chr3R 16246525 intron tara + chr3R 16246586 intron tara + chr3R 16246647 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-441 1857 chr3R 16354484 16354514 chr3R 16354863 16354890 8 381 5.0 4.0 4.5 1.5 406 chr3R 16354484 intron CG10311 - chr3R 16354687 intron CG10311 - chr3R 16354890 intron CG10311 - chr3R_8_16350001 chr3R_16350001 RAL-441 1858 chr3R 16374280 16374298 chr3R 16374417 16374435 4 137 3.0 5.0 4.0 0.8 155 chr3R 16374280 intergenic ss - chr3R 16374358 intergenic ss - chr3R 16374435 3` UTR ss - chr3R_4_16370001 chr3R_16370001 RAL-441 1859 chr3R 16472561 16472588 chr3R 16472657 16472663 4 90 7.5 4.5 6.0 0.6 102 chr3R 16472561 intergenic Gyc-89Da + chr3R 16472612 5` UTR Gyc-89Da + chr3R 16472663 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-441 1860 chr3R 16582894 16582904 chr3R 16582993 16583003 4 98 4.5 4.0 4.2 0.8 109 chr3R 16582894 intron Scp2 - chr3R 16582948 intron Scp2 - chr3R 16583003 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-441 1861 chr3R 16663591 16663639 chr3R 16663683 16663703 6 85 3.5 4.0 3.8 1.2 112 chr3R 16663591 intron Ubx - chr3R 16663647 intron Ubx - chr3R 16663703 intron Ubx - chr3R_6_16660001 chr3R_16660001 RAL-441 1862 chr3R 16732155 16732178 chr3R 16732271 16732294 4 115 0.5 2.0 1.2 1.8 139 chr3R 16732155 intron Ubx - chr3R 16732224 intron Ubx - chr3R 16732294 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-441 1863 chr3R 16756302 16756342 chr3R 16762513 16762550 diver 10 6204 3.0 3.0 3.0 2.5 6248 chr3R 16756302 intron bxd - chr3R 16759426 intron bxd - chr3R 16762550 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-441 1864 chr3R 17023948 17024002 chr3R 17024121 17024175 5 173 3.5 0.0 1.8 1.8 227 chr3R 17023948 intron Pxd + chr3R 17024062 intron Pxd + chr3R 17024175 intron Pxd + chr3R_5_17020001 chr3R_17020001 RAL-441 1865 chr3R 17027619 17027637 chr3R 17030949 17030967 4 3330 21.5 17.5 19.5 0.2 3348 chr3R 17027619 intron Pxd + chr3R 17029293 exon CG5225 + chr3R 17030967 intergenic CG5225 + chr3R_4_17025001 chr3R_17025001 RAL-441 1866 chr3R 17121509 17121551 chr3R 17121721 17121759 12 212 3.0 1.0 2.0 4.0 250 chr3R 17121509 intron cher - chr3R 17121634 intron,exon cher -,CG42779 + chr3R 17121759 intron,exon cher -,CG42779 + chr3R_12_17120001 chr3R_17120001 RAL-441 1867 chr3R 17227312 17227314 chr3R 26242183 26242212 4 9014890 9.5 6.5 8.0 0.4 9014900 chr3R 17227312 intergenic not near genes chr3R 21734762 intergenic not near genes chr3R 26242212 intron CR42745 + chr3R_4_21730001 chr3R_21730001 RAL-441 1868 chr3R 17242648 17242695 chr3R 17242746 17242797 8 99 3.5 6.0 4.8 1.4 149 chr3R 17242648 intron beat-IIb - chr3R 17242722 intron beat-IIb - chr3R 17242797 intron beat-IIb - chr3R_8_17240001 chr3R_17240001 RAL-441 1869 chr3R 17294651 17294703 chr3R 17295099 17295138 BS 20 443 2.0 5.5 3.8 4.2 487 chr3R 17294651 intergenic not near genes chr3R 17294894 intergenic not near genes chr3R 17295138 intergenic not near genes chr3R_20_17290001 chr3R_17290001 RAL-441 1870 chr3R 17346681 17346720 chr3R 17348264 17348303 F-element 10 1581 3.0 6.0 4.5 1.8 1622 chr3R 17346681 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348303 intron beat-IIa - chr3R_10_17345001 chr3R_17345001 RAL-441 1871 chr3R 17348703 17348750 chr3R 17348811 17348846 15 105 4.5 1.5 3.0 3.8 143 chr3R 17348703 intron beat-IIa - chr3R 17348774 intron beat-IIa - chr3R 17348846 intron beat-IIa - chr3R_15_17345001 chr3R_17345001 RAL-441 1872 chr3R 17406982 17407030 chr3R 17407104 17407152 10 120 3.0 3.5 3.2 2.4 170 chr3R 17406982 intron CG42798 + chr3R 17407067 5` UTR CG42798 + chr3R 17407152 exon CG42798 + chr3R_10_17405001 chr3R_17405001 RAL-441 1873 chr3R 17461182 17461228 chr3R 17461284 17461330 7 102 2.0 4.0 3.0 1.8 148 chr3R 17461182 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461330 intergenic not near genes chr3R_7_17460001 chr3R_17460001 RAL-441 1874 chr3R 17467511 17467521 chr3R 17467580 17467610 9 83 5.0 2.5 3.8 1.9 99 chr3R 17467511 intergenic not near genes chr3R 17467560 intergenic not near genes chr3R 17467610 intergenic not near genes chr3R_9_17465001 chr3R_17465001 RAL-441 1875 chr3R 17522209 17522242 chr3R 17522306 17522320 4 91 4.5 0.0 2.2 1.2 111 chr3R 17522209 intergenic not near genes chr3R 17522264 intergenic not near genes chr3R 17522320 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-441 1876 chr3R 17546347 17546398 chr3R 17546447 17546501 19 101 3.0 2.5 2.8 5.0 154 chr3R 17546347 intron Prx3 - chr3R 17546424 5` UTR Prx3 - chr3R 17546501 5` UTR Prx3 - chr3R_19_17545001 chr3R_17545001 RAL-441 1877 chr3R 17554333 17554383 chr3R 17554630 17554680 15 296 6.5 1.5 4.0 3.0 347 chr3R 17554333 intergenic not near genes chr3R 17554506 intergenic not near genes chr3R 17554680 intergenic not near genes chr3R_15_17550001 chr3R_17550001 RAL-441 1878 chr3R 17593024 17593053 chr3R 17593181 17593210 6 156 2.5 1.5 2.0 2.0 186 chr3R 17593024 intergenic not near genes chr3R 17593117 intergenic not near genes chr3R 17593210 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-441 1879 chr3R 17638298 17638338 chr3R 17638804 17638844 roo 7 506 3.0 2.5 2.8 1.8 546 chr3R 17638298 intron CG43175 + chr3R 17638571 intron CG43175 + chr3R 17638844 intron,intron CG43175 +,CR45222 + chr3R_7_17635001 chr3R_17635001 RAL-441 1880 chr3R 17653067 17653105 chr3R 17653175 17653204 8 102 3.0 6.0 4.5 1.5 137 chr3R 17653067 intron,intron CG14322 +,CR45223 - chr3R 17653136 intron,intron CG14322 +,CR45223 - chr3R 17653204 intron,intron CG14322 +,CR45223 - chr3R_8_17650001 chr3R_17650001 RAL-441 1881 chr3R 17734833 17734851 chr3R 17734964 17734984 4 132 2.5 0.5 1.5 1.6 151 chr3R 17734833 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17734984 intergenic not near genes chr3R_4_17730001 chr3R_17730001 RAL-441 1882 chr3R 17773358 17773388 chr3R 17773473 17773483 9 111 3.5 4.5 4.0 1.8 125 chr3R 17773358 exon CG43102 - chr3R 17773420 intron CG43102 - chr3R 17773483 exon CG43102 - chr3R_9_17770001 chr3R_17770001 RAL-441 1883 chr3R 17823197 17823209 chr3R 17823302 17823314 5 104 5.0 3.5 4.2 1.0 117 chr3R 17823197 intron tinc + chr3R 17823256 intron tinc + chr3R 17823314 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-441 1884 chr3R 17895324 17895377 chr3R 17895432 17895487 5 108 5.0 3.0 4.0 1.0 163 chr3R 17895324 intron Rim - chr3R 17895406 intron Rim - chr3R 17895487 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-441 1885 chr3R 17925865 17925886 chr3R 17927338 17927361 hobo 8 1479 3.0 9.0 6.0 1.1 1496 chr3R 17925865 intron cpo + chr3R 17926613 intron cpo + chr3R 17927361 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-441 1886 chr3R 18003021 18003038 chr3R 18003134 18003149 7 114 4.5 1.0 2.8 1.8 128 chr3R 18003021 intron cpo + chr3R 18003085 intron cpo + chr3R 18003149 intron cpo + chr3R_7_18000001 chr3R_18000001 RAL-441 1887 chr3R 18032805 18032810 chr3R 18040496 18040503 opus 4 7692 0.0 8.5 4.2 0.8 7698 chr3R 18032805 intergenic not near genes chr3R 18036654 intergenic not near genes chr3R 18040503 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-441 1888 chr3R 18041739 18041770 chr3R 18041833 18041850 9 93 0.5 1.0 0.8 5.0 111 chr3R 18041739 intergenic not near genes chr3R 18041794 intergenic not near genes chr3R 18041850 intergenic not near genes chr3R_9_18040001 chr3R_18040001 RAL-441 1889 chr3R 18061423 18061447 chr3R 18061535 18061559 6 112 3.5 0.5 2.0 2.0 136 chr3R 18061423 intergenic not near genes chr3R 18061491 intergenic not near genes chr3R 18061559 intergenic not near genes chr3R_6_18060001 chr3R_18060001 RAL-441 1890 chr3R 18067960 18068022 chr3R 18068076 18068124 7 106 0.0 1.5 0.8 3.9 164 chr3R 18067960 intergenic not near genes chr3R 18068042 intergenic not near genes chr3R 18068124 intergenic not near genes chr3R_7_18065001 chr3R_18065001 RAL-441 1891 chr3R 18078157 18078175 chr3R 18078255 18078273 5 98 7.0 5.0 6.0 0.7 116 chr3R 18078157 intergenic not near genes chr3R 18078215 intergenic not near genes chr3R 18078273 intergenic not near genes chr3R_5_18075001 chr3R_18075001 RAL-441 1892 chr3R 18125159 18125206 chr3R 18125271 18125309 8 106 1.5 5.5 3.5 1.8 150 chr3R 18125159 intron sr + chr3R 18125234 intron sr + chr3R 18125309 intron sr + chr3R_8_18125001 chr3R_18125001 RAL-441 1893 chr3R 18143565 18143590 chr3R 18143674 18143699 5 107 2.0 6.0 4.0 1.0 134 chr3R 18143565 intergenic not near genes chr3R 18143632 intergenic not near genes chr3R 18143699 intergenic not near genes chr3R_5_18140001 chr3R_18140001 RAL-441 1894 chr3R 18215757 18215767 chr3R 18215934 18215956 4 186 1.5 4.0 2.8 1.1 199 chr3R 18215757 intergenic CG14314 + chr3R 18215856 intergenic CG14314 + chr3R 18215956 intergenic CG14314 + chr3R_4_18215001 chr3R_18215001 RAL-441 1895 chr3R 18324912 18324958 chr3R 18325017 18325061 12 103 7.0 3.0 5.0 2.0 149 chr3R 18324912 intron CG31235 - chr3R 18324986 intron CG31235 - chr3R 18325061 intron CG31235 - chr3R_12_18320001 chr3R_18320001 RAL-441 1896 chr3R 18352561 18352607 chr3R 18352672 18352720 9 108 1.5 5.5 3.5 2.0 159 chr3R 18352561 intron CG15803 - chr3R 18352640 intron CG15803 - chr3R 18352720 intron CG15803 - chr3R_9_18350001 chr3R_18350001 RAL-441 1897 chr3R 18429430 18429475 chr3R 18429727 18429772 8 297 1.0 5.0 3.0 2.0 342 chr3R 18429430 intron fru - chr3R 18429601 intron fru - chr3R 18429772 intron fru - chr3R_8_18425001 chr3R_18425001 RAL-441 1898 chr3R 18464293 18464335 chr3R 18464451 18464494 4 158 0.0 4.0 2.0 1.3 201 chr3R 18464293 intron fru - chr3R 18464394 intron fru - chr3R 18464494 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-441 1899 chr3R 18472265 18472279 chr3R 18472386 18472398 5 120 4.0 1.0 2.5 1.4 133 chr3R 18472265 intron fru - chr3R 18472332 intron fru - chr3R 18472398 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-441 1900 chr3R 18606484 18606532 chr3R 18610735 18610784 F-element 8 4249 4.0 5.0 4.5 1.5 4300 chr3R 18606484 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_8_18605001 chr3R_18605001 RAL-441 1901 chr3R 18618267 18618275 chr3R 18618372 18618380 4 105 2.5 8.0 5.2 0.6 113 chr3R 18618267 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618380 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-441 1902 chr3R 18628856 18629035 chr3R 18629000 18629145 10 119 0.0 0.0 0.0 10.0 289 chr3R 18628856 intron qin + chr3R 18629000 intron qin + chr3R 18629145 intron qin + chr3R_10_18625001 chr3R_18625001 RAL-441 1903 chr3R 18631945 18631999 chr3R 18632059 18632105 6 110 0.0 5.0 2.5 1.7 160 chr3R 18631945 intron,intron qin +,CG14301 - chr3R 18632025 intron,intron qin +,CG14301 - chr3R 18632105 intron,intron qin +,CG14301 - chr3R_6_18630001 chr3R_18630001 RAL-441 1904 chr3R 18670388 18670398 chr3R 18670477 18670488 5 102 7.0 4.0 5.5 0.8 100 chr3R 18670388 intron CG7702 + chr3R 18670438 intron CG7702 + chr3R 18670488 intron CG7702 + chr3R_5_18670001 chr3R_18670001 RAL-441 1905 chr3R 18681815 18681833 chr3R 18681929 18681947 5 114 2.5 1.0 1.8 1.8 132 chr3R 18681815 intron CG7708 + chr3R 18681881 intron CG7708 + chr3R 18681947 intron CG7708 + chr3R_5_18680001 chr3R_18680001 RAL-441 1906 chr3R 18695742 18695784 chr3R 18695846 18695849 4 94 3.5 0.0 1.8 1.4 107 chr3R 18695742 3` UTR CG34282 + chr3R 18695796 intergenic CG34282 + chr3R 18695849 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-441 1907 chr3R 18766755 18766801 chr3R 18766853 18766899 11 87 4.0 2.0 3.0 2.8 144 chr3R 18766755 intron CG7720 - chr3R 18766827 intron CG7720 - chr3R 18766899 intron CG7720 - chr3R_11_18765001 chr3R_18765001 RAL-441 1908 chr3R 18802113 18802156 chr3R 18802215 18802261 9 104 2.5 4.0 3.2 2.1 148 chr3R 18802113 3` UTR CG18208 - chr3R 18802187 3` UTR CG18208 - chr3R 18802261 3` UTR CG18208 - chr3R_9_18800001 chr3R_18800001 RAL-441 1909 chr3R 18817519 18817539 chr3R 18817637 18817656 4 117 0.0 0.0 0.0 4.0 137 chr3R 18817519 intron CG18208 - chr3R 18817588 intron CG18208 - chr3R 18817656 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-441 1910 chr3R 18818153 18818202 chr3R 18818251 18818261 11 91 1.5 3.5 2.5 3.1 108 chr3R 18818153 intron CG18208 - chr3R 18818207 intron CG18208 - chr3R 18818261 intron CG18208 - chr3R_11_18815001 chr3R_18815001 RAL-441 1911 chr3R 18822896 18822945 chr3R 18823008 18823057 13 106 5.5 1.0 3.2 3.1 161 chr3R 18822896 intron CG18208 - chr3R 18822976 intron CG18208 - chr3R 18823057 intron CG18208 - chr3R_13_18820001 chr3R_18820001 RAL-441 1912 chr3R 18839792 18839830 chr3R 18839896 18839933 17 101 6.5 3.0 4.8 2.9 141 chr3R 18839792 intron CG18208 - chr3R 18839862 intron CG18208 - chr3R 18839933 intron CG18208 - chr3R_17_18835001 chr3R_18835001 RAL-441 1913 chr3R 18843723 18843758 chr3R 18843811 18843861 8 99 4.0 2.5 3.2 1.9 138 chr3R 18843723 intron CG18208 - chr3R 18843792 intron CG18208 - chr3R 18843861 intron CG18208 - chr3R_8_18840001 chr3R_18840001 RAL-441 1914 chr3R 18861688 18861735 chr3R 18861920 18861976 19 238 4.5 4.0 4.2 3.7 288 chr3R 18861688 intergenic not near genes chr3R 18861832 intergenic not near genes chr3R 18861976 intergenic not near genes chr3R_19_18860001 chr3R_18860001 RAL-441 1915 chr3R 18863754 18863799 chr3R 18864085 18864110 16 329 3.0 1.0 2.0 5.3 356 chr3R 18863754 intergenic not near genes chr3R 18863932 intergenic not near genes chr3R 18864110 intergenic not near genes chr3R_16_18860001 chr3R_18860001 RAL-441 1916 chr3R 18891796 18891843 chr3R 18891898 18891945 15 95 2.5 2.0 2.2 4.7 149 chr3R 18891796 intergenic not near genes chr3R 18891870 intergenic not near genes chr3R 18891945 intergenic not near genes chr3R_15_18890001 chr3R_18890001 RAL-441 1917 chr3R 19136406 19136409 chr3R 19139775 19139872 Bari1 20 3381 63.0 31.0 47.0 0.4 3466 chr3R 19136406 exon Cyp12a4 + chr3R 19138139 intergenic not near genes chr3R 19139872 3` UTR Ppcs - chr3R_20_19135001 chr3R_19135001 RAL-441 1918 chr3R 19140244 19140301 chr3R 19140712 19140748 8 459 2.5 1.0 1.8 2.9 504 chr3R 19140244 3` UTR Ppcs - chr3R 19140496 3` UTR Ppcs - chr3R 19140748 3` UTR Ppcs - chr3R_8_19140001 chr3R_19140001 RAL-441 1919 chr3R 19165900 19165951 chr3R 19166030 19166080 14 128 5.0 7.0 6.0 2.0 180 chr3R 19165900 intron sqz + chr3R 19165990 intron sqz + chr3R 19166080 intron sqz + chr3R_14_19165001 chr3R_19165001 RAL-441 1920 chr3R 19206109 19206140 chr3R 19206346 19206378 8 238 4.5 3.5 4.0 1.6 269 chr3R 19206109 intergenic not near genes chr3R 19206244 intergenic not near genes chr3R 19206378 intergenic not near genes chr3R_8_19205001 chr3R_19205001 RAL-441 1921 chr3R 19291607 19291625 chr3R 19291918 19291925 4 307 6.5 2.5 4.5 0.7 318 chr3R 19291607 intergenic not near genes chr3R 19291766 intergenic not near genes chr3R 19291925 intergenic not near genes chr3R_4_19290001 chr3R_19290001 RAL-441 1922 chr3R 19291627 19291653 chr3R 19291910 19291964 6 302 3.5 2.0 2.8 1.6 337 chr3R 19291627 intergenic not near genes chr3R 19291796 intergenic not near genes chr3R 19291964 intergenic not near genes chr3R_6_19290001 chr3R_19290001 RAL-441 1923 chr3R 19340384 19340412 chr3R 19340478 19340495 9 93 3.0 3.0 3.0 2.2 111 chr3R 19340384 intergenic not near genes chr3R 19340440 intergenic not near genes chr3R 19340495 intergenic not near genes chr3R_9_19340001 chr3R_19340001 RAL-441 1924 chr3R 19344647 19344698 chr3R 19344802 19344804 6 135 2.5 2.5 2.5 1.7 157 chr3R 19344647 intergenic not near genes chr3R 19344726 intergenic not near genes chr3R 19344804 intergenic not near genes chr3R_6_19340001 chr3R_19340001 RAL-441 1925 chr3R 19431095 19431126 chr3R 19431350 19431381 10 252 2.0 3.0 2.5 2.9 286 chr3R 19431095 intron CG31221 + chr3R 19431238 intron CG31221 + chr3R 19431381 intron CG31221 + chr3R_10_19430001 chr3R_19430001 RAL-441 1926 chr3R 19534270 19534300 chr3R 19534372 19534404 7 99 3.5 3.5 3.5 1.6 134 chr3R 19534270 intron Dys + chr3R 19534337 intron Dys + chr3R 19534404 intron Dys + chr3R_7_19530001 chr3R_19530001 RAL-441 1927 chr3R 19556730 19556768 chr3R 19557141 19557179 6 406 4.5 4.5 4.5 1.1 449 chr3R 19556730 intron Dys + chr3R 19556954 intron Dys + chr3R 19557179 intron Dys + chr3R_6_19555001 chr3R_19555001 RAL-441 1928 chr3R 19702303 19702354 chr3R 19702404 19702456 13 99 5.5 3.5 4.5 2.4 153 chr3R 19702303 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702456 intergenic not near genes chr3R_13_19700001 chr3R_19700001 RAL-441 1929 chr3R 19718929 19718932 chr3R 19719029 19719032 4 100 0.0 5.0 2.5 1.1 103 chr3R 19718929 intergenic not near genes chr3R 19718980 intergenic not near genes chr3R 19719032 intergenic not near genes chr3R_4_19715001 chr3R_19715001 RAL-441 1930 chr3R 19750041 19750068 chr3R 19750132 19750158 7 97 3.5 4.0 3.8 1.5 117 chr3R 19750041 intron GluClalpha + chr3R 19750100 intron GluClalpha + chr3R 19750158 intron GluClalpha + chr3R_7_19750001 chr3R_19750001 RAL-441 1931 chr3R 19827509 19827558 chr3R 19827615 19827664 6 106 2.0 2.5 2.2 1.9 155 chr3R 19827509 intron bnl - chr3R 19827586 intron bnl - chr3R 19827664 exon bnl - chr3R_6_19825001 chr3R_19825001 RAL-441 1932 chr3R 19830873 19830882 chr3R 19830970 19830979 5 97 0.0 4.0 2.0 1.7 106 chr3R 19830873 intron bnl - chr3R 19830926 intron bnl - chr3R 19830979 intron bnl - chr3R_5_19830001 chr3R_19830001 RAL-441 1933 chr3R 19846939 19846992 chr3R 19847119 19847152 11 178 2.5 3.5 3.0 2.8 213 chr3R 19846939 intergenic CG4662 + chr3R 19847046 intergenic CG4662 + chr3R 19847152 intergenic CG4662 + chr3R_11_19845001 chr3R_19845001 RAL-441 1934 chr3R 19943860 19943893 chr3R 19943960 19943972 11 90 6.5 0.0 3.2 2.6 112 chr3R 19943860 intron Hs6st - chr3R 19943916 intron Hs6st - chr3R 19943972 intron Hs6st - chr3R_11_19940001 chr3R_19940001 RAL-441 1935 chr3R 19953938 19953979 chr3R 19954028 19954040 7 73 3.5 2.5 3.0 1.8 102 chr3R 19953938 intron Hs6st - chr3R 19953989 intron Hs6st - chr3R 19954040 intron Hs6st - chr3R_7_19950001 chr3R_19950001 RAL-441 1936 chr3R 20008823 20008855 chr3R 20008906 20008942 6 90 3.0 4.5 3.8 1.2 119 chr3R 20008823 intergenic MED25 +,Hs6st - chr3R 20008882 intergenic MED25 +,Hs6st - chr3R 20008942 intergenic MED25 +,Hs6st - chr3R_6_20005001 chr3R_20005001 RAL-441 1937 chr3R 20060615 20060656 chr3R 20060715 20060759 19 100 4.5 3.0 3.8 4.0 144 chr3R 20060615 intergenic not near genes chr3R 20060687 intergenic not near genes chr3R 20060759 intergenic not near genes chr3R_19_20060001 chr3R_20060001 RAL-441 1938 chr3R 20064088 20064120 chr3R 20064184 20064216 12 92 3.5 1.5 2.5 3.4 128 chr3R 20064088 intergenic not near genes chr3R 20064152 intergenic not near genes chr3R 20064216 intergenic not near genes chr3R_12_20060001 chr3R_20060001 RAL-441 1939 chr3R 20077015 20077069 chr3R 20077121 20077158 10 100 2.5 5.0 3.8 2.1 143 chr3R 20077015 intergenic not near genes chr3R 20077086 intergenic not near genes chr3R 20077158 intergenic not near genes chr3R_10_20075001 chr3R_20075001 RAL-441 1940 chr3R 20109529 20109550 chr3R 20114754 20114776 copia 10 5225 5.0 5.5 5.2 1.6 5247 chr3R 20109529 intergenic not near genes chr3R 20112152 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_10_20110001 chr3R_20110001 RAL-441 1941 chr3R 20109551 20109563 chr3R 20114741 20114753 copia 7 5212 3.0 5.0 4.0 1.4 5202 chr3R 20109551 intergenic not near genes chr3R 20112152 intergenic not near genes chr3R 20114753 intergenic CG10887 + chr3R_7_20110001 chr3R_20110001 RAL-441 1942 chr3R 20166278 20166302 chr3R 20166373 20166398 10 93 3.5 4.5 4.0 2.0 120 chr3R 20166278 intergenic not near genes chr3R 20166338 intergenic not near genes chr3R 20166398 intergenic not near genes chr3R_10_20165001 chr3R_20165001 RAL-441 1943 chr3R 20205546 20205589 chr3R 20205688 20205729 7 142 3.5 1.0 2.2 2.2 183 chr3R 20205546 intron Nlg4 + chr3R 20205638 intron Nlg4 + chr3R 20205729 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-441 1944 chr3R 20228687 20228714 chr3R 20228786 20228821 7 104 18.0 19.0 18.5 0.4 134 chr3R 20228687 intron Nlg4 + chr3R 20228754 intron Nlg4 + chr3R 20228821 intron Nlg4 + chr3R_7_20225001 chr3R_20225001 RAL-441 1945 chr3R 20245271 20245291 chr3R 20248902 20248922 F-element 4 3631 2.0 2.0 2.0 1.3 3651 chr3R 20245271 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248922 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-441 1946 chr3R 20252234 20252251 chr3R 20252332 20252349 4 98 0.0 0.0 0.0 4.0 115 chr3R 20252234 intergenic not near genes chr3R 20252292 intergenic cic + chr3R 20252349 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-441 1947 chr3R 20256845 20256869 chr3R 20256915 20256967 6 87 0.0 1.5 0.8 3.3 122 chr3R 20256845 intron cic + chr3R 20256906 intron cic + chr3R 20256967 intron cic + chr3R_6_20255001 chr3R_20255001 RAL-441 1948 chr3R 20266501 20266536 chr3R 20272992 20273027 Burdock 8 6490 2.0 4.0 3.0 2.0 6526 chr3R 20266501 intron cic + chr3R 20269764 intron cic + chr3R 20273027 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-441 1949 chr3R 20282293 20282308 chr3R 20282388 20282404 4 96 0.0 7.0 3.5 0.9 111 chr3R 20282293 intron cic + chr3R 20282348 intron cic + chr3R 20282404 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-441 1950 chr3R 20308176 20308215 chr3R 20308284 20308332 4 113 3.5 0.5 2.0 1.3 156 chr3R 20308176 intergenic not near genes chr3R 20308254 intergenic not near genes chr3R 20308332 intergenic not near genes chr3R_4_20305001 chr3R_20305001 RAL-441 1951 chr3R 20330978 20331022 chr3R 20331484 20331501 roo 7 502 3.5 2.0 2.8 1.8 523 chr3R 20330978 intergenic Sirt2 + chr3R 20331240 intergenic Sirt2 + chr3R 20331501 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-441 1952 chr3R 20382575 20382603 chr3R 20382694 20382728 7 130 2.5 2.5 2.5 2.0 153 chr3R 20382575 intron Gfrl - chr3R 20382652 intron Gfrl - chr3R 20382728 intron Gfrl - chr3R_7_20380001 chr3R_20380001 RAL-441 1953 chr3R 20389461 20389502 chr3R 20389559 20389608 11 99 3.5 3.0 3.2 2.6 147 chr3R 20389461 intron Gfrl - chr3R 20389534 intron Gfrl - chr3R 20389608 intron Gfrl - chr3R_11_20385001 chr3R_20385001 RAL-441 1954 chr3R 20498500 20498545 chr3R 20498611 20498658 4 112 2.5 1.5 2.0 1.3 158 chr3R 20498500 intergenic not near genes chr3R 20498579 intergenic not near genes chr3R 20498658 intergenic not near genes chr3R_4_20495001 chr3R_20495001 RAL-441 1955 chr3R 20506573 20506606 chr3R 20507396 20507429 BS 6 822 1.5 2.0 1.8 2.1 856 chr3R 20506573 intergenic Or92a + chr3R 20507001 intergenic CG4288 - chr3R 20507429 3` UTR CG4288 - chr3R_6_20505001 chr3R_20505001 RAL-441 1956 chr3R 20564125 20564154 chr3R 20564478 20564527 13 363 3.0 4.0 3.5 2.9 402 chr3R 20564125 intron CG5191 + chr3R 20564326 intron CG5191 + chr3R 20564527 intron CG5191 + chr3R_13_20560001 chr3R_20560001 RAL-441 1957 chr3R 20573283 20573305 chr3R 20573504 20573526 5 221 5.0 0.5 2.8 1.3 243 chr3R 20573283 intergenic CG5191 + chr3R 20573404 intergenic CG5191 + chr3R 20573526 intergenic not near genes chr3R_5_20570001 chr3R_20570001 RAL-441 1958 chr3R 20594466 20594512 chr3R 20594576 20594619 9 109 0.5 0.5 0.5 6.0 153 chr3R 20594466 intron bon + chr3R 20594542 intron bon + chr3R 20594619 intron bon + chr3R_9_20590001 chr3R_20590001 RAL-441 1959 chr3R 20657301 20657344 chr3R 20657465 20657492 5 160 1.5 1.0 1.2 2.3 191 chr3R 20657301 intron Nep4 - chr3R 20657396 intron Nep4 - chr3R 20657492 intron Nep4 - chr3R_5_20655001 chr3R_20655001 RAL-441 1960 chr3R 20669907 20669948 chr3R 20670018 20670059 8 109 1.5 1.5 1.5 3.2 152 chr3R 20669907 intron Cpr92F + chr3R 20669983 intron Cpr92F + chr3R 20670059 intron Cpr92F + chr3R_8_20665001 chr3R_20665001 RAL-441 1961 chr3R 20719104 20719141 chr3R 20719212 20719232 6 105 3.5 4.0 3.8 1.2 128 chr3R 20719104 intergenic not near genes chr3R 20719168 intergenic not near genes chr3R 20719232 intergenic not near genes chr3R_6_20715001 chr3R_20715001 RAL-441 1962 chr3R 20722834 20722886 chr3R 20722981 20722996 15 141 2.0 3.0 2.5 4.3 162 chr3R 20722834 intergenic not near genes chr3R 20722915 intergenic not near genes chr3R 20722996 intergenic not near genes chr3R_15_20720001 chr3R_20720001 RAL-441 1963 chr3R 20730924 20730943 chr3R 20731035 20731052 6 110 3.5 0.5 2.0 2.0 128 chr3R 20730924 intergenic not near genes chr3R 20730988 intergenic not near genes chr3R 20731052 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-441 1964 chr3R 20771709 20771723 chr3R 20771809 20771824 4 100 0.0 3.0 1.5 1.6 115 chr3R 20771709 intron,intron Syp +,Takl1 - chr3R 20771766 intron,intron Syp +,Takl1 - chr3R 20771824 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-441 1965 chr3R 20787421 20787457 chr3R 20787532 20787568 5 109 3.0 2.0 2.5 1.4 147 chr3R 20787421 intron Syp + chr3R 20787494 intron Syp + chr3R 20787568 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-441 1966 chr3R 20854472 20854481 chr3R 20859276 20859291 Doc 4 4806 11.5 4.0 7.8 0.5 4819 chr3R 20854472 intron Ir93a - chr3R 20856882 intron Ir93a - chr3R 20859291 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-441 1967 chr3R 20854506 20854521 chr3R 20859270 20859270 Doc 4 4764 5.5 2.5 4.0 0.8 4764 chr3R 20854506 intron Ir93a - chr3R 20856888 intron Ir93a - chr3R 20859270 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-441 1968 chr3R 20865285 20865321 chr3R 20865384 20865402 5 94 3.5 5.0 4.2 1.0 117 chr3R 20865285 intron CG3822 - chr3R 20865344 intron CG3822 - chr3R 20865402 intron CG3822 - chr3R_5_20865001 chr3R_20865001 RAL-441 1969 chr3R 20940570 20940592 chr3R 20940667 20940689 5 91 6.0 9.5 7.8 0.6 119 chr3R 20940570 intron CG31191 - chr3R 20940630 intron CG31191 - chr3R 20940689 intron CG31191 - chr3R_5_20940001 chr3R_20940001 RAL-441 1970 chr3R 21108029 21108048 chr3R 21108309 21108329 4 280 4.0 3.5 3.8 0.8 300 chr3R 21108029 intergenic Sec15 -,rtet + chr3R 21108179 intergenic Sec15 -,rtet + chr3R 21108329 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-441 1971 chr3R 21132611 21132649 chr3R 21132714 21132752 4 103 2.0 0.0 1.0 2.0 141 chr3R 21132611 3` UTR Ice2 + chr3R 21132682 3` UTR Ice2 + chr3R 21132752 3` UTR CG7009 - chr3R_4_21130001 chr3R_21130001 RAL-441 1972 chr3R 21154552 21154587 chr3R 21154787 21154822 9 234 2.5 1.5 2.0 3.0 270 chr3R 21154552 intron SNF4Agamma + chr3R 21154687 intron SNF4Agamma + chr3R 21154822 intron SNF4Agamma + chr3R_9_21150001 chr3R_21150001 RAL-441 1973 chr3R 21464383 21464402 chr3R 21464489 21464508 6 105 2.5 1.0 1.8 2.1 125 chr3R 21464383 intergenic not near genes chr3R 21464446 intergenic not near genes chr3R 21464508 intergenic not near genes chr3R_6_21460001 chr3R_21460001 RAL-441 1974 chr3R 21471999 21472034 chr3R 21472099 21472133 8 100 5.0 2.0 3.5 1.8 134 chr3R 21471999 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472133 intergenic not near genes chr3R_8_21470001 chr3R_21470001 RAL-441 1975 chr3R 21502945 21502952 chr3R 21503111 21503117 6 165 6.0 3.0 4.5 1.1 172 chr3R 21502945 intron C15 + chr3R 21503031 intron C15 + chr3R 21503117 intron C15 + chr3R_6_21500001 chr3R_21500001 RAL-441 1976 chr3R 21502956 21502985 chr3R 21503105 21503133 7 156 3.0 3.0 3.0 1.8 177 chr3R 21502956 intron C15 + chr3R 21503044 intron C15 + chr3R 21503133 intron C15 + chr3R_7_21500001 chr3R_21500001 RAL-441 1977 chr3R 21582984 21582995 chr3R 21583104 21583116 9 119 5.0 6.0 5.5 1.4 132 chr3R 21582984 intron InR - chr3R 21583050 intron InR - chr3R 21583116 intron InR - chr3R_9_21580001 chr3R_21580001 RAL-441 1978 chr3R 21624089 21624117 chr3R 21624203 21624231 8 114 3.5 3.0 3.2 1.9 142 chr3R 21624089 intron E2f - chr3R 21624160 intron E2f - chr3R 21624231 intron E2f - chr3R_8_21620001 chr3R_21620001 RAL-441 1979 chr3R 21761116 21761146 chr3R 21768513 21768547 mdg1 5 7390 7.0 2.0 4.5 0.9 7431 chr3R 21761116 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768547 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-441 1980 chr3R 21903618 21903634 chr3R 21903735 21903750 7 116 0.0 4.0 2.0 2.3 132 chr3R 21903618 intron CG6678 + chr3R 21903684 intron CG6678 + chr3R 21903750 intron CG6678 + chr3R_7_21900001 chr3R_21900001 RAL-441 1981 chr3R 17389054 17389054 chr3R 21907534 21907534 6 4518480 8.0 20.0 14.0 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-441 1982 chr3R 21337429 21337429 chr3R 21907534 21907534 4 570105 10.5 20.0 15.2 0.2 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-441 1983 chr3R 21907534 21907534 chr3R 28831801 28831803 20 6924268 21.0 17.0 19.0 1.0 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-441 1984 chr3R 21907535 21907535 chr3R 28831801 28831803 27 6924267 21.5 17.0 19.2 1.3 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-441 1985 chr3R 21907536 21907536 chr3R 28831801 28831802 23 6924266 21.5 17.0 19.2 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-441 1986 chr3R 21944379 21944402 chr3R 21944477 21944478 4 93 5.5 6.0 5.8 0.6 99 chr3R 21944379 intergenic not near genes chr3R 21944428 intergenic not near genes chr3R 21944478 intergenic not near genes chr3R_4_21940001 chr3R_21940001 RAL-441 1987 chr3R 21983132 21983170 chr3R 21983220 21983225 15 84 2.5 3.0 2.8 3.9 93 chr3R 21983132 intron Eip93F + chr3R 21983178 intron Eip93F + chr3R 21983225 intron Eip93F + chr3R_15_21980001 chr3R_21980001 RAL-441 1988 chr3R 21985209 21985240 chr3R 21985334 21985362 7 124 4.5 2.0 3.2 1.7 153 chr3R 21985209 intron Eip93F + chr3R 21985286 intron Eip93F + chr3R 21985362 intron Eip93F + chr3R_7_21985001 chr3R_21985001 RAL-441 1989 chr3R 22000977 22001002 chr3R 22001303 22001342 6 330 1.5 2.5 2.0 2.0 365 chr3R 22000977 intron Eip93F + chr3R 22001160 intron Eip93F + chr3R 22001342 intron Eip93F + chr3R_6_22000001 chr3R_22000001 RAL-441 1990 chr3R 22055549 22055585 chr3R 22055758 22055794 10 206 3.5 2.5 3.0 2.5 245 chr3R 22055549 intron how + chr3R 22055672 intron how + chr3R 22055794 intron how + chr3R_10_22055001 chr3R_22055001 RAL-441 1991 chr3R 22157500 22157549 chr3R 22157619 22157669 16 119 3.5 2.0 2.8 4.2 169 chr3R 22157500 intron SKIP + chr3R 22157584 intron SKIP + chr3R 22157669 intron SKIP + chr3R_16_22155001 chr3R_22155001 RAL-441 1992 chr3R 22239505 22239525 chr3R 22248549 22248584 roo 5 9061 1.5 0.0 0.8 2.8 9079 chr3R 22239505 intron SKIP + chr3R 22244044 intron SKIP + chr3R 22248584 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-441 1993 chr3R 22272330 22272366 chr3R 22272432 22272452 7 96 5.5 5.0 5.2 1.1 122 chr3R 22272330 intron SKIP + chr3R 22272391 intron SKIP + chr3R 22272452 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-441 1994 chr3R 22292456 22292503 chr3R 22292554 22292601 12 97 3.0 2.0 2.5 3.4 145 chr3R 22292456 exon SKIP + chr3R 22292528 intron SKIP + chr3R 22292601 intron SKIP + chr3R_12_22290001 chr3R_22290001 RAL-441 1995 chr3R 22428558 22428602 chr3R 22428653 22428679 8 88 2.5 2.0 2.2 2.5 121 chr3R 22428558 intron CG13847 - chr3R 22428618 intron CG13847 - chr3R 22428679 intron CG13847 - chr3R_8_22425001 chr3R_22425001 RAL-441 1996 chr3R 22450531 22450555 chr3R 22453190 22453215 NOF 5 2659 8.0 6.0 7.0 0.6 2684 chr3R 22450531 intron CG34376 + chr3R 22451873 intron CG34376 + chr3R 22453215 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-441 1997 chr3R 22450566 22450578 chr3R 22453186 22453237 NOF 4 2637 5.5 5.0 5.2 0.6 2671 chr3R 22450566 intron CG34376 + chr3R 22451902 intron CG34376 + chr3R 22453237 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-441 1998 chr3R 22507774 22507799 chr3R 22507878 22507901 4 103 10.5 5.5 8.0 0.4 127 chr3R 22507774 intron Octbeta1R + chr3R 22507838 intron Octbeta1R + chr3R 22507901 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-441 1999 chr3R 22507801 22507819 chr3R 22507874 22507912 4 91 4.0 4.5 4.2 0.8 111 chr3R 22507801 intron Octbeta1R + chr3R 22507856 intron Octbeta1R + chr3R 22507912 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-441 2000 chr3R 22538435 22538463 chr3R 22538534 22538560 11 100 4.0 4.0 4.0 2.2 125 chr3R 22538435 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538560 intron CG5326 - chr3R_11_22535001 chr3R_22535001 RAL-441 2001 chr3R 22582477 22582492 chr3R 22583441 22583497 7 999 16.0 12.0 14.0 0.5 1020 chr3R 22582477 exon Dph5 - chr3R 22582987 exon Dph5 - chr3R 22583497 exon CG33107 - chr3R_7_22580001 chr3R_22580001 RAL-441 2002 chr3R 22582439 22582439 chr3R 22583401 22583433 9 967 14.0 10.0 12.0 0.7 994 chr3R 22582439 exon Dph5 - chr3R 22582936 intron Dph5 - chr3R 22583433 3` UTR CG33107 - chr3R_9_22580001 chr3R_22580001 RAL-441 2003 chr3R 22769089 22769124 chr3R 22769169 22769221 14 91 3.5 3.5 3.5 3.1 132 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769155 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769221 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_14_22765001 chr3R_22765001 RAL-441 2004 chr3R 22779468 22779503 chr3R 22779553 22779592 5 85 4.5 4.0 4.2 1.0 124 chr3R 22779468 intron,3` UTR CG7029 +,CR43654 - chr3R 22779530 intron,3` UTR CG7029 +,CR43654 - chr3R 22779592 intron,3` UTR CG7029 +,CR43654 - chr3R_5_22775001 chr3R_22775001 RAL-441 2005 chr3R 22794500 22794520 chr3R 22794596 22794616 6 95 6.5 4.5 5.5 0.9 116 chr3R 22794500 intergenic CG7029 + chr3R 22794558 intergenic not near genes chr3R 22794616 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-441 2006 chr3R 22794522 22794546 chr3R 22794593 22794642 4 90 4.5 5.0 4.8 0.7 120 chr3R 22794522 intergenic CG7029 + chr3R 22794582 intergenic not near genes chr3R 22794642 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-441 2007 chr3R 22797746 22797931 chr3R 22797852 22798045 13 104 0.5 0.0 0.2 10.8 299 chr3R 22797746 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798045 intergenic not near genes chr3R_13_22795001 chr3R_22795001 RAL-441 2008 chr3R 22842379 22842392 chr3R 22842498 22842509 4 116 5.5 7.0 6.2 0.6 130 chr3R 22842379 intergenic not near genes chr3R 22842444 intergenic not near genes chr3R 22842509 intergenic not near genes chr3R_4_22840001 chr3R_22840001 RAL-441 2009 chr3R 22842394 22842420 chr3R 22842491 22842539 7 111 2.0 6.5 4.2 1.3 145 chr3R 22842394 intergenic not near genes chr3R 22842466 intergenic not near genes chr3R 22842539 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-441 2010 chr3R 22853279 22853296 chr3R 22853375 22853390 6 96 4.5 4.5 4.5 1.1 111 chr3R 22853279 intergenic not near genes chr3R 22853334 intergenic not near genes chr3R 22853390 intergenic not near genes chr3R_6_22850001 chr3R_22850001 RAL-441 2011 chr3R 22860143 22860175 chr3R 22860244 22860286 11 109 1.0 0.5 0.8 6.1 143 chr3R 22860143 intergenic not near genes chr3R 22860214 intergenic not near genes chr3R 22860286 intergenic not near genes chr3R_11_22860001 chr3R_22860001 RAL-441 2012 chr3R 22880914 22880958 chr3R 22881072 22881115 6 158 2.0 2.5 2.2 1.9 201 chr3R 22880914 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881115 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-441 2013 chr3R 22916715 22916765 chr3R 22916811 22916836 8 87 4.0 3.0 3.5 1.8 121 chr3R 22916715 intron klg + chr3R 22916776 intron klg + chr3R 22916836 intron klg + chr3R_8_22915001 chr3R_22915001 RAL-441 2014 chr3R 22971224 22971259 chr3R 22971337 22971373 8 113 7.0 4.0 5.5 1.2 149 chr3R 22971224 intergenic not near genes chr3R 22971298 intergenic not near genes chr3R 22971373 intergenic not near genes chr3R_8_22970001 chr3R_22970001 RAL-441 2015 chr3R 22993498 22993536 chr3R 22993640 22993690 6 145 2.5 5.0 3.8 1.2 192 chr3R 22993498 intron Nha2 - chr3R 22993594 intron Nha2 - chr3R 22993690 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-441 2016 chr3R 22994977 22995025 chr3R 22995113 22995164 14 130 3.0 2.5 2.8 3.7 187 chr3R 22994977 intron Nha2 - chr3R 22995070 intron Nha2 - chr3R 22995164 intron Nha2 - chr3R_14_22995001 chr3R_22995001 RAL-441 2017 chr3R 23073639 23073655 chr3R 23073746 23073749 4 104 5.5 2.5 4.0 0.8 110 chr3R 23073639 intron CG13830 - chr3R 23073694 intron CG13830 - chr3R 23073749 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-441 2018 chr3R 23073673 23073684 chr3R 23073745 23073789 4 96 4.0 2.5 3.2 1.0 116 chr3R 23073673 intron CG13830 - chr3R 23073731 intron CG13830 - chr3R 23073789 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-441 2019 chr3R 23100160 23100420 chr3R 23100241 23100511 7 92 7.5 2.5 5.0 1.2 351 chr3R 23100160 intron,exon CG13830 -,CG6738 + chr3R 23100336 intron,exon CG13830 -,CG6738 + chr3R 23100511 intron,exon CG13830 -,CG6738 + chr3R_7_23100001 chr3R_23100001 RAL-441 2020 chr3R 23291236 23291279 chr3R 23291341 23291352 6 94 8.5 8.0 8.2 0.7 116 chr3R 23291236 3` UTR pnt - chr3R 23291294 3` UTR pnt - chr3R 23291352 3` UTR pnt - chr3R_6_23290001 chr3R_23290001 RAL-441 2021 chr3R 23335424 23335462 chr3R 23335518 23335560 5 96 3.0 9.0 6.0 0.7 136 chr3R 23335424 intron pnt - chr3R 23335492 intron pnt - chr3R 23335560 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-441 2022 chr3R 23548065 23548100 chr3R 23548371 23548409 4 312 3.0 0.5 1.8 1.4 344 chr3R 23548065 intergenic not near genes chr3R 23548237 intergenic not near genes chr3R 23548409 intergenic not near genes chr3R_4_23545001 chr3R_23545001 RAL-441 2023 chr3R 23558392 23558420 chr3R 23560192 23560221 Bari1 8 1800 2.0 3.0 2.5 2.3 1829 chr3R 23558392 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560221 intron beat-IV + chr3R_8_23555001 chr3R_23555001 RAL-441 2024 chr3R 23618345 23618379 chr3R 23618454 23618462 4 103 2.5 3.0 2.8 1.1 117 chr3R 23618345 intron CG31145 - chr3R 23618404 intron CG31145 - chr3R 23618462 intron CG31145 - chr3R_4_23615001 chr3R_23615001 RAL-441 2025 chr3R 23620794 23620828 chr3R 23620933 23620955 11 135 4.0 4.5 4.2 2.1 161 chr3R 23620794 intron CG31145 - chr3R 23620874 intron CG31145 - chr3R 23620955 intron CG31145 - chr3R_11_23620001 chr3R_23620001 RAL-441 2026 chr3R 23682535 23682582 chr3R 23682634 23682681 15 98 4.0 4.0 4.0 3.0 146 chr3R 23682535 exon CG16710 + chr3R 23682608 intron CG16710 + chr3R 23682681 intron CG16710 + chr3R_15_23680001 chr3R_23680001 RAL-441 2027 chr3R 23733797 23733844 chr3R 23734027 23734068 14 229 3.5 6.0 4.8 2.4 271 chr3R 23733797 5` UTR Hmgcr + chr3R 23733932 intron Hmgcr + chr3R 23734068 intron Hmgcr + chr3R_14_23730001 chr3R_23730001 RAL-441 2028 chr3R 23783631 23783647 chr3R 23783727 23783743 6 94 7.0 5.0 6.0 0.9 112 chr3R 23783631 intron mbc + chr3R 23783687 intron mbc + chr3R 23783743 intron mbc + chr3R_6_23780001 chr3R_23780001 RAL-441 2029 chr3R 23783648 23783661 chr3R 23783721 23783740 8 82 5.0 4.5 4.8 1.4 92 chr3R 23783648 intron mbc + chr3R 23783694 intron mbc + chr3R 23783740 intron mbc + chr3R_8_23780001 chr3R_23780001 RAL-441 2030 chr3R 23835390 23835406 chr3R 23844560 23844575 roo 6 9170 9.0 0.5 4.8 1.0 9185 chr3R 23835390 intron CG34355 + chr3R 23839982 intron CG34355 + chr3R 23844575 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-441 2031 chr3R 23865012 23865063 chr3R 23865121 23865172 17 105 3.0 2.5 2.8 4.5 160 chr3R 23865012 intron Pli - chr3R 23865092 intron Pli - chr3R 23865172 intron Pli - chr3R_17_23865001 chr3R_23865001 RAL-441 2032 chr3R 23883089 23883126 chr3R 23883471 23883504 9 374 3.0 6.0 4.5 1.6 415 chr3R 23883089 intron Pli - chr3R 23883296 intron Pli - chr3R 23883504 intron Pli - chr3R_9_23880001 chr3R_23880001 RAL-441 2033 chr3R 23888063 23888109 chr3R 23888169 23888209 10 102 2.0 2.0 2.0 3.3 146 chr3R 23888063 intron Pli - chr3R 23888136 intron Pli - chr3R 23888209 intron Pli - chr3R_10_23885001 chr3R_23885001 RAL-441 2034 chr3R 23944892 23944929 chr3R 23944997 23945034 15 104 3.5 1.5 2.5 4.3 142 chr3R 23944892 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945034 exon CG12268 - chr3R_15_23940001 chr3R_23940001 RAL-441 2035 chr3R 23949021 23949063 chr3R 23949118 23949159 8 95 3.0 3.5 3.2 1.9 138 chr3R 23949021 intergenic not near genes chr3R 23949090 intergenic not near genes chr3R 23949159 intergenic not near genes chr3R_8_23945001 chr3R_23945001 RAL-441 2036 chr3R 24011656 24011671 chr3R 24011757 24011774 4 102 1.0 5.5 3.2 1.0 118 chr3R 24011656 intron KrT95D - chr3R 24011715 intron KrT95D - chr3R 24011774 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-441 2037 chr3R 24015046 24015069 chr3R 24015134 24015139 7 86 4.0 1.0 2.5 2.0 93 chr3R 24015046 intron KrT95D - chr3R 24015092 intron KrT95D - chr3R 24015139 intron KrT95D - chr3R_7_24015001 chr3R_24015001 RAL-441 2038 chr3R 24072084 24072098 chr3R 24072533 24072545 jockey 4 449 8.0 4.5 6.2 0.6 461 chr3R 24072084 intron 4EHP - chr3R 24072314 intron 4EHP - chr3R 24072545 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-441 2039 chr3R 24072101 24072110 chr3R 24072530 24072565 jockey 6 438 5.5 4.5 5.0 1.0 464 chr3R 24072101 intron 4EHP - chr3R 24072333 intron 4EHP - chr3R 24072565 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-441 2040 chr3R 24076919 24076934 chr3R 24078380 24078399 hobo 4 1469 3.5 3.0 3.2 1.0 1480 chr3R 24076919 intron 4EHP - chr3R 24077659 intron 4EHP - chr3R 24078399 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-441 2041 chr3R 24207218 24207246 chr3R 24212313 24212327 flea 8 5092 4.5 11.0 7.8 0.9 5109 chr3R 24207218 intron twin - chr3R 24209772 intron twin - chr3R 24212327 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-441 2042 chr3R 24266978 24267007 chr3R 24270248 24270293 11 3272 18.0 26.5 22.2 0.5 3315 chr3R 24266978 intron jar - chr3R 24268636 intron jar - chr3R 24270293 intron jar - chr3R_11_24265001 chr3R_24265001 RAL-441 2043 chr3R 24431584 24431614 chr3R 24431680 24431712 9 98 6.0 0.0 3.0 2.2 128 chr3R 24431584 intron nAChRalpha1 - chr3R 24431648 intron nAChRalpha1 - chr3R 24431712 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-441 2044 chr3R 24433468 24433505 chr3R 24433559 24433602 5 96 2.0 4.5 3.2 1.2 134 chr3R 24433468 intron nAChRalpha1 - chr3R 24433535 intron nAChRalpha1 - chr3R 24433602 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-441 2045 chr3R 24434968 24435019 chr3R 24435081 24435132 11 109 4.5 3.5 4.0 2.2 164 chr3R 24434968 intron nAChRalpha1 - chr3R 24435050 intron nAChRalpha1 - chr3R 24435132 intron nAChRalpha1 - chr3R_11_24435001 chr3R_24435001 RAL-441 2046 chr3R 24466447 24466491 chr3R 24466545 24466589 7 94 4.5 5.5 5.0 1.2 142 chr3R 24466447 intergenic not near genes chr3R 24466518 intergenic not near genes chr3R 24466589 intergenic not near genes chr3R_7_24465001 chr3R_24465001 RAL-441 2047 chr3R 24473562 24473569 chr3R 24473700 24473708 6 138 9.0 3.0 6.0 0.9 146 chr3R 24473562 intergenic not near genes chr3R 24473635 intergenic not near genes chr3R 24473708 intergenic not near genes chr3R_6_24470001 chr3R_24470001 RAL-441 2048 chr3R 24473583 24473606 chr3R 24473696 24473744 10 135 3.0 2.5 2.8 2.6 161 chr3R 24473583 intergenic not near genes chr3R 24473664 intergenic not near genes chr3R 24473744 intergenic not near genes chr3R_10_24470001 chr3R_24470001 RAL-441 2049 chr3R 24493291 24493307 chr3R 24493533 24493554 BS 5 248 3.5 9.0 6.2 0.7 263 chr3R 24493291 intergenic not near genes chr3R 24493422 intergenic not near genes chr3R 24493554 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-441 2050 chr3R 24527797 24527835 chr3R 24527908 24527945 7 111 1.5 4.5 3.0 1.8 148 chr3R 24527797 intergenic CG6607 +,CG13618 + chr3R 24527871 intergenic CG6607 +,CG13618 + chr3R 24527945 intergenic CG6607 +,CG13618 + chr3R_7_24525001 chr3R_24525001 RAL-441 2051 chr3R 24624364 24624381 chr3R 24624473 24624490 6 109 0.0 6.5 3.2 1.4 126 chr3R 24624364 intron Syx18 - chr3R 24624427 intron Syx18 - chr3R 24624490 exon Syx18 - chr3R_6_24620001 chr3R_24620001 RAL-441 2052 chr3R 24670140 24670196 chr3R 24670244 24670298 9 103 1.0 1.5 1.2 4.1 158 chr3R 24670140 intron slo + chr3R 24670219 intron slo + chr3R 24670298 intron slo + chr3R_9_24670001 chr3R_24670001 RAL-441 2053 chr3R 24730077 24730114 chr3R 24732471 24732482 Doc 8 2386 6.0 0.5 3.2 1.9 2405 chr3R 24730077 intron tok + chr3R 24731280 intron tok + chr3R 24732482 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-441 2054 chr3R 24789965 24790013 chr3R 24790130 24790177 7 158 2.0 2.5 2.2 2.2 212 chr3R 24789965 intron,5` UTR Ets96B +,CG13634 - chr3R 24790071 intron,5` UTR Ets96B +,CG13634 - chr3R 24790177 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-441 2055 chr3R 24836018 24836056 chr3R 24836274 24836316 4 253 0.0 0.5 0.2 3.3 298 chr3R 24836018 intron,5` UTR sosie +,CR45216 + chr3R 24836167 intron,5` UTR sosie +,CR45216 + chr3R 24836316 intron sosie + chr3R_4_24835001 chr3R_24835001 RAL-441 2056 chr3R 24912462 24912513 chr3R 24912562 24912615 12 100 3.0 2.0 2.5 3.4 153 chr3R 24912462 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912615 intergenic CR44267 + chr3R_12_24910001 chr3R_24910001 RAL-441 2057 chr3R 24927120 24927139 chr3R 24931927 24931950 Doc 5 4810 2.5 4.0 3.2 1.2 4830 chr3R 24927120 intergenic Trf4-2 + chr3R 24929535 intergenic not near genes chr3R 24931950 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-441 2058 chr3R 24934590 24934619 chr3R 24934720 24934723 6 120 4.5 1.5 3.0 1.5 133 chr3R 24934590 3` UTR CG11771 + chr3R 24934656 3` UTR CG11771 + chr3R 24934723 3` UTR CG11771 + chr3R_6_24930001 chr3R_24930001 RAL-441 2059 chr3R 25004896 25004921 chr3R 25004999 25005024 8 102 1.5 4.0 2.8 2.1 128 chr3R 25004896 intron tnc + chr3R 25004960 intron tnc + chr3R 25005024 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-441 2060 chr3R 25082252 25082269 chr3R 25082347 25082366 5 97 1.5 9.0 5.2 0.8 114 chr3R 25082252 intergenic fd96Ca + chr3R 25082309 intergenic fd96Ca + chr3R 25082366 intergenic fd96Ca + chr3R_5_25080001 chr3R_25080001 RAL-441 2061 chr3R 25302135 25302136 chr3R 25302331 25302375 10 202 22.5 23.0 22.8 0.4 240 chr3R 25302135 exon CG13659 + chr3R 25302255 exon CG13659 + chr3R 25302375 intergenic CG13659 +,CG31370 + chr3R_10_25300001 chr3R_25300001 RAL-441 2062 chr3R 25368466 25368487 chr3R 25368604 25368624 5 137 4.0 0.0 2.0 1.7 158 chr3R 25368466 intron Fur1 - chr3R 25368545 intron Fur1 - chr3R 25368624 intron Fur1 - chr3R_5_25365001 chr3R_25365001 RAL-441 2063 chr3R 25425538 25425569 chr3R 25425671 25425676 6 125 4.0 1.5 2.8 1.6 138 chr3R 25425538 intron Fur1 - chr3R 25425607 intron Fur1 - chr3R 25425676 intron Fur1 - chr3R_6_25425001 chr3R_25425001 RAL-441 2064 chr3R 25671226 25671267 chr3R 25671344 25671382 6 118 3.0 4.0 3.5 1.3 156 chr3R 25671226 intron Lgr3 + chr3R 25671304 intron Lgr3 + chr3R 25671382 intron Lgr3 + chr3R_6_25670001 chr3R_25670001 RAL-441 2065 chr3R 25725813 25725854 chr3R 25734992 25735034 roo 7 9178 2.5 1.5 2.0 2.3 9221 chr3R 25725813 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735034 intron LpR2 - chr3R_7_25730001 chr3R_25730001 RAL-441 2066 chr3R 25738614 25738649 chr3R 25738721 25738754 12 105 5.0 3.5 4.2 2.3 140 chr3R 25738614 intron LpR2 - chr3R 25738684 intron LpR2 - chr3R 25738754 intron LpR2 - chr3R_12_25735001 chr3R_25735001 RAL-441 2067 chr3R 25743691 25743737 chr3R 25743796 25743799 8 88 1.0 2.0 1.5 3.2 108 chr3R 25743691 intron LpR1 - chr3R 25743745 intron LpR1 - chr3R 25743799 intron LpR1 - chr3R_8_25740001 chr3R_25740001 RAL-441 2068 chr3R 25765863 25765912 chr3R 25765962 25765988 13 82 4.5 0.5 2.5 3.7 125 chr3R 25765863 intergenic not near genes chr3R 25765926 intergenic not near genes chr3R 25765988 intergenic not near genes chr3R_13_25765001 chr3R_25765001 RAL-441 2069 chr3R 25832712 25832723 chr3R 25841878 25841909 roo 4 9189 2.5 5.0 3.8 0.8 9197 chr3R 25832712 exon alpha4GT2 + chr3R 25837310 intron alpha4GT2 + chr3R 25841909 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-441 2070 chr3R 25843618 25843669 chr3R 25843768 25843819 8 150 2.0 2.5 2.2 2.5 201 chr3R 25843618 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843819 intergenic CR45653 + chr3R_8_25840001 chr3R_25840001 RAL-441 2071 chr3R 25864826 25864875 chr3R 25865104 25865153 12 274 3.0 4.5 3.8 2.5 327 chr3R 25864826 intron CG5890 + chr3R 25864990 intron CG5890 + chr3R 25865153 intron CG5890 + chr3R_12_25860001 chr3R_25860001 RAL-441 2072 chr3R 25872884 25872935 chr3R 25872989 25873039 8 104 1.5 3.5 2.5 2.3 155 chr3R 25872884 intergenic Tsp96F -,CG5890 + chr3R 25872962 3` UTR Tsp96F - chr3R 25873039 3` UTR Tsp96F - chr3R_8_25870001 chr3R_25870001 RAL-441 2073 chr3R 25962034 25962079 chr3R 25962150 25962195 10 116 2.0 4.5 3.2 2.4 161 chr3R 25962034 5` UTR boss + chr3R 25962114 intron boss + chr3R 25962195 intron boss + chr3R_10_25960001 chr3R_25960001 RAL-441 2074 chr3R 25997233 25997245 chr3R 25997339 25997352 6 107 5.0 2.0 3.5 1.3 119 chr3R 25997233 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997292 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997352 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_6_25995001 chr3R_25995001 RAL-441 2075 chr3R 26093827 26093866 chr3R 26093924 26093964 5 98 4.5 4.5 4.5 0.9 137 chr3R 26093827 intron dys - chr3R 26093896 intron dys - chr3R 26093964 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-441 2076 chr3R 26122450 26122475 chr3R 26122545 26122568 6 95 3.0 6.0 4.5 1.1 118 chr3R 26122450 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122568 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-441 2077 chr3R 26126530 26126568 chr3R 26126636 26126674 13 105 1.0 4.5 2.8 3.4 144 chr3R 26126530 intron CG31324 + chr3R 26126602 intron CG31324 + chr3R 26126674 intron,5` UTR CG31324 +,CG14556 + chr3R_13_26125001 chr3R_26125001 RAL-441 2078 chr3R 26144437 26144451 chr3R 26144535 26144549 4 98 5.5 2.5 4.0 0.8 112 chr3R 26144437 intergenic not near genes chr3R 26144493 intergenic not near genes chr3R 26144549 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-441 2079 chr3R 26144464 26144476 chr3R 26144530 26144574 4 84 3.0 2.5 2.8 1.1 110 chr3R 26144464 intergenic not near genes chr3R 26144519 intergenic not near genes chr3R 26144574 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-441 2080 chr3R 26239810 26239853 chr3R 26240140 26240179 13 328 2.5 3.5 3.0 3.2 369 chr3R 26239810 intron CR42745 + chr3R 26239994 intron CR42745 + chr3R 26240179 intron CR42745 + chr3R_13_26235001 chr3R_26235001 RAL-441 2081 chr3R 26292088 26292135 chr3R 26292188 26292235 12 97 4.5 2.5 3.5 2.7 147 chr3R 26292088 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292235 intergenic not near genes chr3R_12_26290001 chr3R_26290001 RAL-441 2082 chr3R 26339209 26339252 chr3R 26339322 26339366 10 114 2.0 4.5 3.2 2.4 157 chr3R 26339209 intron CG33970 + chr3R 26339288 intron CG33970 + chr3R 26339366 intron CG33970 + chr3R_10_26335001 chr3R_26335001 RAL-441 2083 chr3R 26374831 26374843 chr3R 26374943 26374964 6 120 4.0 3.5 3.8 1.2 133 chr3R 26374831 intergenic not near genes chr3R 26374898 intergenic not near genes chr3R 26374964 intergenic not near genes chr3R_6_26370001 chr3R_26370001 RAL-441 2084 chr3R 26376305 26376355 chr3R 26385485 26385522 roo 10 9176 3.5 0.0 1.8 3.6 9217 chr3R 26376305 intergenic not near genes chr3R 26380914 intergenic not near genes chr3R 26385522 intergenic not near genes chr3R_10_26380001 chr3R_26380001 RAL-441 2085 chr3R 26419573 26419607 chr3R 26419709 26419712 7 131 1.0 3.0 2.0 2.3 139 chr3R 26419573 intergenic not near genes chr3R 26419642 intergenic not near genes chr3R 26419712 intergenic not near genes chr3R_7_26415001 chr3R_26415001 RAL-441 2086 chr3R 26482337 26482393 chr3R 26482435 26482446 12 89 5.0 3.5 4.2 2.3 109 chr3R 26482337 intron plum - chr3R 26482392 intron plum - chr3R 26482446 intron plum - chr3R_12_26480001 chr3R_26480001 RAL-441 2087 chr3R 26510501 26510533 chr3R 26519576 26519582 roo 10 9072 1.5 4.0 2.8 2.6 9081 chr3R 26510501 intron plum - chr3R 26515042 intron plum - chr3R 26519582 intron,5` UTR plum -,CR45226 + chr3R_10_26515001 chr3R_26515001 RAL-441 2088 chr3R 26541701 26541747 chr3R 26541951 26541976 17 252 4.5 2.0 3.2 4.0 275 chr3R 26541701 intron scrib + chr3R 26541838 intron scrib + chr3R 26541976 intron scrib + chr3R_17_26540001 chr3R_26540001 RAL-441 2089 chr3R 26558327 26558360 chr3R 26565659 26565685 Stalker4 8 7319 2.5 4.5 3.5 1.8 7358 chr3R 26558327 intron scrib + chr3R 26562006 intron scrib + chr3R 26565685 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-441 2090 chr3R 26642713 26642744 chr3R 26643125 26643155 jockey 10 411 7.0 1.5 4.2 1.9 442 chr3R 26642713 intergenic not near genes chr3R 26642934 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-441 2091 chr3R 26668617 26668653 chr3R 26668695 26668749 14 87 5.0 2.5 3.8 2.9 132 chr3R 26668617 intron beat-VII - chr3R 26668683 intron beat-VII - chr3R 26668749 intron beat-VII - chr3R_14_26665001 chr3R_26665001 RAL-441 2092 chr3R 26685841 26685892 chr3R 26686038 26686092 13 198 3.5 5.5 4.5 2.4 251 chr3R 26685841 intergenic not near genes chr3R 26685966 intergenic not near genes chr3R 26686092 intergenic not near genes chr3R_13_26685001 chr3R_26685001 RAL-441 2093 chr3R 26788955 26788966 chr3R 26789019 26789066 5 81 3.0 1.5 2.2 1.6 111 chr3R 26788955 intergenic not near genes chr3R 26789010 intergenic not near genes chr3R 26789066 intergenic not near genes chr3R_5_26785001 chr3R_26785001 RAL-441 2094 chr3R 26810542 26810583 chr3R 26811046 26811077 roo 13 504 2.5 6.0 4.2 2.5 535 chr3R 26810542 intron Tl + chr3R 26810810 intron Tl + chr3R 26811077 intron Tl + chr3R_13_26810001 chr3R_26810001 RAL-441 2095 chr3R 26945421 26945434 chr3R 26945521 26945534 4 100 2.5 5.0 3.8 0.8 113 chr3R 26945421 intergenic sda +,CG14252 + chr3R 26945478 intergenic CG14252 +,sda + chr3R 26945534 5` UTR CG14252 + chr3R_4_26945001 chr3R_26945001 RAL-441 2096 chr3R 27007396 27007438 chr3R 27016547 27016563 roo 9 9150 3.5 2.0 2.8 2.4 9167 chr3R 27007396 intron RYa-R + chr3R 27011980 intron RYa-R + chr3R 27016563 intron RYa-R + chr3R_9_27010001 chr3R_27010001 RAL-441 2097 chr3R 27028709 27028746 chr3R 27028808 27028825 9 97 5.5 2.0 3.8 1.9 116 chr3R 27028709 intron RYa-R + chr3R 27028767 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-441 2098 chr3R 27028747 27028754 chr3R 27028803 27028853 4 88 4.0 1.5 2.8 1.1 106 chr3R 27028747 intron RYa-R + chr3R 27028800 intron RYa-R + chr3R 27028853 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-441 2099 chr3R 27030203 27030246 chr3R 27030350 27030392 10 146 1.5 0.0 0.8 5.6 189 chr3R 27030203 intron RYa-R + chr3R 27030298 intron RYa-R + chr3R 27030392 intron RYa-R + chr3R_10_27030001 chr3R_27030001 RAL-441 2100 chr3R 27054495 27054539 chr3R 27054614 27054653 9 116 6.0 8.5 7.2 1.1 158 chr3R 27054495 intron RYa-R + chr3R 27054574 intron RYa-R + chr3R 27054653 intron RYa-R + chr3R_9_27050001 chr3R_27050001 RAL-441 2101 chr3R 27088359 27088410 chr3R 27088473 27088508 10 101 4.5 1.5 3.0 2.5 149 chr3R 27088359 intergenic not near genes chr3R 27088434 intergenic not near genes chr3R 27088508 intergenic not near genes chr3R_10_27085001 chr3R_27085001 RAL-441 2102 chr3R 27091427 27091465 chr3R 27091519 27091572 9 102 1.5 3.5 2.5 2.6 145 chr3R 27091427 intergenic Cpr97Eb - chr3R 27091500 intergenic Cpr97Eb - chr3R 27091572 intergenic Cpr97Eb - chr3R_9_27090001 chr3R_27090001 RAL-441 2103 chr3R 27133503 27133535 chr3R 27133639 27133670 8 135 5.0 3.0 4.0 1.6 167 chr3R 27133503 intron CG6051 - chr3R 27133586 intron CG6051 - chr3R 27133670 intron CG6051 - chr3R_8_27130001 chr3R_27130001 RAL-441 2104 chr3R 27140496 27140548 chr3R 27148124 27148178 412 13 7626 4.0 3.5 3.8 2.7 7682 chr3R 27140496 intron CG6051 - chr3R 27144337 intron CG6051 - chr3R 27148178 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-441 2105 chr3R 27300866 27300877 chr3R 27300952 27300989 4 100 1.5 4.0 2.8 1.1 123 chr3R 27300866 intron CG3339 - chr3R 27300928 intron CG3339 - chr3R 27300989 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-441 2106 chr3R 27323237 27323273 chr3R 27323999 27324033 9 761 5.5 5.5 5.5 1.4 796 chr3R 27323237 intergenic not near genes chr3R 27323635 intergenic not near genes chr3R 27324033 intergenic not near genes chr3R_9_27320001 chr3R_27320001 RAL-441 2107 chr3R 27327410 27327456 chr3R 27327506 27327522 9 84 2.0 4.0 3.0 2.2 112 chr3R 27327410 intergenic not near genes chr3R 27327466 intergenic not near genes chr3R 27327522 intergenic not near genes chr3R_9_27325001 chr3R_27325001 RAL-441 2108 chr3R 27329461 27329491 chr3R 27329557 27329587 5 97 4.0 4.0 4.0 1.0 126 chr3R 27329461 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329587 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-441 2109 chr3R 27342779 27342814 chr3R 27351380 27351406 Tirant 12 8600 5.0 3.0 4.0 2.4 8627 chr3R 27342779 intron CG42534 + chr3R 27347092 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_12_27345001 chr3R_27345001 RAL-441 2110 chr3R 27492360 27492404 chr3R 27492467 27492510 8 102 3.0 1.0 2.0 2.7 150 chr3R 27492360 intergenic not near genes chr3R 27492435 intergenic not near genes chr3R 27492510 intergenic not near genes chr3R_8_27490001 chr3R_27490001 RAL-441 2111 chr3R 27496580 27496600 chr3R 27496699 27496725 11 123 3.0 3.0 3.0 2.8 145 chr3R 27496580 intergenic not near genes chr3R 27496652 intergenic not near genes chr3R 27496725 intergenic not near genes chr3R_11_27495001 chr3R_27495001 RAL-441 2112 chr3R 27517414 27517461 chr3R 27517537 27517577 20 120 3.5 7.5 5.5 3.1 163 chr3R 27517414 intergenic CG13972 - chr3R 27517496 intergenic CG13972 - chr3R 27517577 intergenic CG13972 - chr3R_20_27515001 chr3R_27515001 RAL-441 2113 chr3R 27521167 27521178 chr3R 27530381 27530407 roo 4 9221 2.5 2.0 2.2 1.2 9240 chr3R 27521167 intron CG12885 + chr3R 27525787 intron CG12885 + chr3R 27530407 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-441 2114 chr3R 27594720 27594759 chr3R 27594825 27594864 7 105 3.5 2.0 2.8 1.8 144 chr3R 27594720 intron CG5639 - chr3R 27594792 intron CG5639 - chr3R 27594864 intron CG5639 - chr3R_7_27590001 chr3R_27590001 RAL-441 2115 chr3R 27619691 27619728 chr3R 27619818 27619846 11 121 3.0 0.5 1.8 3.9 155 chr3R 27619691 intron Tusp + chr3R 27619768 intron Tusp + chr3R 27619846 intron Tusp + chr3R_11_27615001 chr3R_27615001 RAL-441 2116 chr3R 27703411 27703459 chr3R 27703511 27703558 10 100 4.5 3.5 4.0 2.0 147 chr3R 27703411 3` UTR,3` UTR btz +,CG12428 - chr3R 27703484 3` UTR CG12428 - chr3R 27703558 3` UTR CG12428 - chr3R_10_27700001 chr3R_27700001 RAL-441 2117 chr3R 27718559 27718596 chr3R 27718658 27718695 6 99 4.0 1.5 2.8 1.6 136 chr3R 27718559 intergenic not near genes chr3R 27718627 intergenic not near genes chr3R 27718695 intergenic not near genes chr3R_6_27715001 chr3R_27715001 RAL-441 2118 chr3R 27725553 27725589 chr3R 27731015 27731051 I-element 4 5462 6.5 6.0 6.2 0.6 5498 chr3R 27725553 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731051 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-441 2119 chr3R 27752739 27752787 chr3R 27753143 27753192 10 402 2.0 3.0 2.5 2.9 453 chr3R 27752739 intergenic not near genes chr3R 27752966 intergenic not near genes chr3R 27753192 intergenic not near genes chr3R_10_27750001 chr3R_27750001 RAL-441 2120 chr3R 27779261 27779264 chr3R 27779360 27779364 4 100 3.5 7.0 5.2 0.6 103 chr3R 27779261 exon CG34353 - chr3R 27779312 intron CG34353 - chr3R 27779364 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-441 2121 chr3R 27799936 27799963 chr3R 27800022 27800065 9 100 0.5 2.5 1.5 3.6 129 chr3R 27799936 intron CG34353 - chr3R 27800000 intron CG34353 - chr3R 27800065 intron CG34353 - chr3R_9_27795001 chr3R_27795001 RAL-441 2122 chr3R 27856763 27856789 chr3R 27858251 27858292 hopper2 10 1500 3.0 2.5 2.8 2.6 1529 chr3R 27856763 intron CG34353 - chr3R 27857528 intron CG34353 - chr3R 27858292 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-441 2123 chr3R 27862940 27862967 chr3R 27868265 27868291 Transpac 7 5324 6.5 4.5 5.5 1.1 5351 chr3R 27862940 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868291 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-441 2124 chr3R 27871035 27871086 chr3R 27871156 27871201 9 117 2.0 3.0 2.5 2.6 166 chr3R 27871035 intron CG34353 - chr3R 27871118 intron CG34353 - chr3R 27871201 intron CG34353 - chr3R_9_27870001 chr3R_27870001 RAL-441 2125 chr3R 28039964 28039993 chr3R 28040067 28040075 7 96 3.0 5.0 4.0 1.4 111 chr3R 28039964 intron CG34362 + chr3R 28040020 intron CG34362 + chr3R 28040075 intron CG34362 + chr3R_7_28040001 chr3R_28040001 RAL-441 2126 chr3R 28068486 28068507 chr3R 28073948 28073956 I-element 5 5459 6.0 4.0 5.0 0.8 5470 chr3R 28068486 intron CG34362 + chr3R 28071221 intron CG34362 + chr3R 28073956 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-441 2127 chr3R 28084959 28085002 chr3R 28085091 28085127 10 126 4.0 3.5 3.8 2.1 168 chr3R 28084959 intron CG34362 + chr3R 28085043 intron CG34362 + chr3R 28085127 intron CG34362 + chr3R_10_28085001 chr3R_28085001 RAL-441 2128 chr3R 28102220 28102269 chr3R 28102317 28102360 5 97 0.5 1.0 0.8 2.8 140 chr3R 28102220 intergenic not near genes chr3R 28102290 intergenic not near genes chr3R 28102360 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-441 2129 chr3R 28126739 28126755 chr3R 28126813 28126834 5 94 4.5 2.0 3.2 1.2 95 chr3R 28126739 intergenic not near genes chr3R 28126786 intergenic not near genes chr3R 28126834 intergenic not near genes chr3R_5_28125001 chr3R_28125001 RAL-441 2130 chr3R 28131420 28131459 chr3R 28131622 28131647 7 197 0.5 3.5 2.0 2.3 227 chr3R 28131420 intergenic not near genes chr3R 28131534 intergenic not near genes chr3R 28131647 intergenic not near genes chr3R_7_28130001 chr3R_28130001 RAL-441 2131 chr3R 28152333 28152358 chr3R 28152428 28152453 9 95 6.5 5.0 5.8 1.3 120 chr3R 28152333 intron CG34354 + chr3R 28152393 intron CG34354 + chr3R 28152453 intron CG34354 + chr3R_9_28150001 chr3R_28150001 RAL-441 2132 chr3R 28173657 28173697 chr3R 28181107 28181147 mdg1 8 7450 7.5 2.5 5.0 1.3 7490 chr3R 28173657 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181147 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-441 2133 chr3R 28202245 28202295 chr3R 28202348 28202398 5 103 4.5 1.0 2.8 1.3 153 chr3R 28202245 exon CG34354 + chr3R 28202322 intron CG34354 + chr3R 28202398 intron CG34354 + chr3R_5_28200001 chr3R_28200001 RAL-441 2134 chr3R 28212543 28212571 chr3R 28212624 28212675 10 98 3.0 1.5 2.2 3.1 132 chr3R 28212543 intron CG34354 + chr3R 28212609 intron CG34354 + chr3R 28212675 intron CG34354 + chr3R_10_28210001 chr3R_28210001 RAL-441 2135 chr3R 28230804 28230853 chr3R 28230904 28230956 13 101 2.0 4.0 3.0 3.2 152 chr3R 28230804 intron CG34354 + chr3R 28230880 intron CG34354 + chr3R 28230956 intron CG34354 + chr3R_13_28230001 chr3R_28230001 RAL-441 2136 chr3R 28253341 28253368 chr3R 28255853 28255898 jockey 9 2518 2.5 5.0 3.8 1.9 2557 chr3R 28253341 intergenic not near genes chr3R 28254620 intergenic not near genes chr3R 28255898 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-441 2137 chr3R 28267291 28267303 chr3R 28267393 28267405 4 102 2.5 2.0 2.2 1.2 114 chr3R 28267291 intergenic not near genes chr3R 28267348 intergenic not near genes chr3R 28267405 intergenic not near genes chr3R_4_28265001 chr3R_28265001 RAL-441 2138 chr3R 28282978 28283013 chr3R 28283618 28283661 11 647 4.0 5.0 4.5 2.0 683 chr3R 28282978 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283661 intergenic CG34437 +,CG34436 + chr3R_11_28280001 chr3R_28280001 RAL-441 2139 chr3R 28302090 28302131 chr3R 28302549 28302586 jockey 12 459 5.0 7.5 6.2 1.7 496 chr3R 28302090 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302586 intergenic not near genes chr3R_12_28300001 chr3R_28300001 RAL-441 2140 chr3R 28330281 28330309 chr3R 28330544 28330572 8 260 7.0 1.5 4.2 1.5 291 chr3R 28330281 intron larp - chr3R 28330426 intron larp - chr3R 28330572 intron larp - chr3R_8_28330001 chr3R_28330001 RAL-441 2141 chr3R 28331502 28331521 chr3R 28331601 28331620 5 99 2.5 4.5 3.5 1.1 118 chr3R 28331502 intron larp - chr3R 28331561 intron larp - chr3R 28331620 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-441 2142 chr3R 28352494 28352536 chr3R 28352853 28352896 11 358 3.5 2.5 3.0 2.8 402 chr3R 28352494 exon Or98b + chr3R 28352695 exon Or98b + chr3R 28352896 exon Or98b + chr3R_11_28350001 chr3R_28350001 RAL-441 2143 chr3R 28393683 28393728 chr3R 28393797 28393810 10 108 2.0 3.5 2.8 2.6 127 chr3R 28393683 intergenic not near genes chr3R 28393746 intergenic not near genes chr3R 28393810 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-441 2144 chr3R 28478420 28478439 chr3R 28478501 28478537 4 89 3.0 3.0 3.0 1.0 117 chr3R 28478420 intergenic not near genes chr3R 28478478 intergenic not near genes chr3R 28478537 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-441 2145 chr3R 28479150 28479164 chr3R 28479230 28479267 5 97 3.0 2.0 2.5 1.4 117 chr3R 28479150 intergenic not near genes chr3R 28479208 intergenic not near genes chr3R 28479267 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-441 2146 chr3R 28480317 28480330 chr3R 28480407 28480431 4 98 1.5 2.0 1.8 1.4 114 chr3R 28480317 intergenic not near genes chr3R 28480374 intergenic not near genes chr3R 28480431 intergenic not near genes chr3R_4_28480001 chr3R_28480001 RAL-441 2147 chr3R 28484354 28484375 chr3R 28486256 28486273 16 1899 37.5 65.5 51.5 0.3 1919 chr3R 28484354 intergenic CG1894 + chr3R 28485314 exon CG1894 + chr3R 28486273 intergenic CG1894 + chr3R_16_28485001 chr3R_28485001 RAL-441 2148 chr3R 28484353 28484394 chr3R 28486274 28486291 17 1904 45.0 44.5 44.8 0.4 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_17_28485001 chr3R_28485001 RAL-441 2149 chr3R 28563867 28563910 chr3R 28563960 28563980 7 81 5.0 2.5 3.8 1.5 113 chr3R 28563867 intergenic not near genes chr3R 28563924 intergenic not near genes chr3R 28563980 intergenic not near genes chr3R_7_28560001 chr3R_28560001 RAL-441 2150 chr3R 28599354 28599405 chr3R 28599520 28599572 14 164 4.0 3.5 3.8 2.9 218 chr3R 28599354 intergenic Noa36 - chr3R 28599463 intergenic Noa36 - chr3R 28599572 intergenic Noa36 - chr3R_14_28595001 chr3R_28595001 RAL-441 2151 chr3R 28616459 28616495 chr3R 28616573 28616609 10 110 3.0 3.0 3.0 2.5 150 chr3R 28616459 intron CG10011 - chr3R 28616534 intron CG10011 - chr3R 28616609 intron CG10011 - chr3R_10_28615001 chr3R_28615001 RAL-441 2152 chr3R 28686708 28686762 chr3R 28686809 28686831 21 93 1.5 2.5 2.0 7.0 123 chr3R 28686708 intron CG9990 + chr3R 28686770 intron CG9990 + chr3R 28686831 intron CG9990 + chr3R_21_28685001 chr3R_28685001 RAL-441 2153 chr3R 28696470 28696488 chr3R 28696566 28696585 10 97 5.0 2.5 3.8 2.1 115 chr3R 28696470 intron htt + chr3R 28696528 intron htt + chr3R 28696585 intron htt + chr3R_10_28695001 chr3R_28695001 RAL-441 2154 chr3R 28696490 28696495 chr3R 28696564 28696594 4 86 4.5 2.5 3.5 0.9 104 chr3R 28696490 intron htt + chr3R 28696542 intron htt + chr3R 28696594 intron htt + chr3R_4_28695001 chr3R_28695001 RAL-441 2155 chr3R 28698159 28698205 chr3R 28698261 28698299 8 100 3.5 4.0 3.8 1.7 140 chr3R 28698159 intron htt + chr3R 28698229 intron htt + chr3R 28698299 intron htt + chr3R_8_28695001 chr3R_28695001 RAL-441 2156 chr3R 28758266 28758287 chr3R 28763903 28763921 roo 4 5636 5.5 1.0 3.2 1.0 5655 chr3R 28758266 intergenic aqrs - chr3R 28761094 intergenic not near genes chr3R 28763921 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-441 2157 chr3R 28792886 28792900 chr3R 28797963 28798015 jockey 5 5094 1.5 2.0 1.8 1.8 5129 chr3R 28792886 intergenic not near genes chr3R 28795450 intergenic not near genes chr3R 28798015 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-441 2158 chr3R 28830869 28830920 chr3R 28830967 28830985 10 91 2.5 3.5 3.0 2.5 116 chr3R 28830869 intron WASp - chr3R 28830927 intron WASp - chr3R 28830985 intron WASp - chr3R_10_28830001 chr3R_28830001 RAL-441 2159 chr3R 21907534 21907536 chr3R 28831798 28831801 22 6924266 21.5 17.5 19.5 1.1 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-441 2160 chr3R 21907534 21907536 chr3R 28831802 28831802 18 6924267 21.5 17.0 19.2 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-441 2161 chr3R 28947959 28947984 chr3R 28948091 28948116 10 130 8.5 6.5 7.5 1.2 157 chr3R 28947959 intron CG14521 - chr3R 28948038 intron CG14521 - chr3R 28948116 intron CG14521 - chr3R_10_28945001 chr3R_28945001 RAL-441 2162 chr3R 28968394 28968447 chr3R 28968490 28968544 12 92 2.5 3.5 3.0 3.0 150 chr3R 28968394 intron CG14521 - chr3R 28968469 intron CG14521 - chr3R 28968544 intron CG14521 - chr3R_12_28965001 chr3R_28965001 RAL-441 2163 chr3R 21907536 21907536 chr3R 29013340 29013340 4 7105804 21.5 22.0 21.8 0.2 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-441 2164 chr3R 29034449 29034490 chr3R 29034552 29034577 13 99 4.0 4.0 4.0 2.6 128 chr3R 29034449 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R 29034513 intergenic Cpsf100 +,CR45044 + chr3R 29034577 5` UTR Cpsf100 + chr3R_13_29030001 chr3R_29030001 RAL-441 2165 chr3R 29070038 29070080 chr3R 29070139 29070181 8 100 2.5 4.5 3.5 1.8 143 chr3R 29070038 intron CG11873 + chr3R 29070110 intron CG11873 + chr3R 29070181 intron CG11873 + chr3R_8_29070001 chr3R_29070001 RAL-441 2166 chr3R 29077797 29077810 chr3R 29077898 29077908 5 99 3.5 1.0 2.2 1.6 111 chr3R 29077797 intron CG11873 + chr3R 29077852 intron CG11873 + chr3R 29077908 intron CG11873 + chr3R_5_29075001 chr3R_29075001 RAL-441 2167 chr3R 29077819 29077845 chr3R 29077896 29077925 5 81 1.0 1.0 1.0 2.5 106 chr3R 29077819 intron CG11873 + chr3R 29077872 intron CG11873 + chr3R 29077925 intron CG11873 + chr3R_5_29075001 chr3R_29075001 RAL-441 2168 chr3R 29079380 29079405 chr3R 29080771 29080777 NOF 5 1388 5.0 0.5 2.8 1.3 1397 chr3R 29079380 intron CG11873 + chr3R 29080078 intron CG11873 + chr3R 29080777 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-441 2169 chr3R 29090732 29090783 chr3R 29090869 29090894 8 130 2.0 4.5 3.2 1.9 162 chr3R 29090732 intron CG11873 + chr3R 29090813 intron CG11873 + chr3R 29090894 intron CG11873 + chr3R_8_29090001 chr3R_29090001 RAL-441 2170 chr3R 29128454 29128499 chr3R 29128577 29128622 6 122 1.5 1.5 1.5 2.4 168 chr3R 29128454 intergenic dgt6 -,CG11880 + chr3R 29128538 intergenic dgt6 -,CG11880 + chr3R 29128622 3` UTR dgt6 - chr3R_6_29125001 chr3R_29125001 RAL-441 2171 chr3R 29203829 29203852 chr3R 29203929 29203951 5 99 6.0 0.0 3.0 1.2 122 chr3R 29203829 5` UTR CG14508 - chr3R 29203890 intron CG14508 - chr3R 29203951 intron CG14508 - chr3R_5_29200001 chr3R_29200001 RAL-441 2172 chr3R 29213051 29213091 chr3R 29213157 29213189 11 104 2.0 3.5 2.8 2.9 138 chr3R 29213051 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213189 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-441 2173 chr3R 29237269 29237276 chr3R 29239279 29239292 4 2016 14.5 8.5 11.5 0.3 2023 chr3R 29237269 exon CG11951 - chr3R 29238280 intron CG11951 - chr3R 29239292 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-441 2174 chr3R 29240291 29240333 chr3R 29240395 29240431 6 103 2.0 0.5 1.2 2.7 140 chr3R 29240291 intron CG31427 - chr3R 29240361 5` UTR CG31427 - chr3R 29240431 intergenic CG31427 -,CG31445 - chr3R_6_29240001 chr3R_29240001 RAL-441 2175 chr3R 29264174 29264199 chr3R 29264291 29264313 5 119 1.0 2.0 1.5 2.0 139 chr3R 29264174 intergenic not near genes chr3R 29264244 intergenic not near genes chr3R 29264313 intergenic not near genes chr3R_5_29260001 chr3R_29260001 RAL-441 2176 chr3R 29319807 29319855 chr3R 29320140 29320186 jockey 8 336 1.5 3.5 2.5 2.3 379 chr3R 29319807 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320186 intergenic not near genes chr3R_8_29315001 chr3R_29315001 RAL-441 2177 chr3R 29356028 29356082 chr3R 29356128 29356183 7 99 4.0 2.0 3.0 1.8 155 chr3R 29356028 intergenic CR45547 - chr3R 29356106 intergenic CR45547 - chr3R 29356183 3` UTR CR45547 - chr3R_7_29355001 chr3R_29355001 RAL-441 2178 chr3R 29365379 29365414 chr3R 29365481 29365509 8 101 3.5 5.5 4.5 1.5 130 chr3R 29365379 intergenic not near genes chr3R 29365444 intergenic not near genes chr3R 29365509 intergenic not near genes chr3R_8_29365001 chr3R_29365001 RAL-441 2179 chr3R 29406614 29406643 chr3R 29407905 29407931 jockey 8 1295 2.5 4.0 3.2 1.9 1317 chr3R 29406614 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-441 2180 chr3R 29429793 29429806 chr3R 29429871 29429904 5 87 3.0 3.5 3.2 1.2 111 chr3R 29429793 intron Ptp99A + chr3R 29429848 intron Ptp99A + chr3R 29429904 intron Ptp99A + chr3R_5_29425001 chr3R_29425001 RAL-441 2181 chr3R 29431467 29431486 chr3R 29431569 29431571 5 100 4.0 8.5 6.2 0.7 104 chr3R 29431467 intron Ptp99A + chr3R 29431519 intron Ptp99A + chr3R 29431571 intron Ptp99A + chr3R_5_29430001 chr3R_29430001 RAL-441 2182 chr3R 29440602 29440624 chr3R 29441079 29441084 5 473 10.0 3.5 6.8 0.6 482 chr3R 29440602 intron Ptp99A + chr3R 29440843 intron Ptp99A + chr3R 29441084 intron Ptp99A + chr3R_5_29440001 chr3R_29440001 RAL-441 2183 chr3R 29446978 29447010 chr3R 29447085 29447110 6 105 5.0 4.5 4.8 1.0 132 chr3R 29446978 intron Ptp99A + chr3R 29447044 intron Ptp99A + chr3R 29447110 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-441 2184 chr3R 29471991 29472032 chr3R 29472103 29472144 11 105 3.5 1.5 2.5 3.1 153 chr3R 29471991 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472144 intron Ptp99A + chr3R_11_29470001 chr3R_29470001 RAL-441 2185 chr3R 29474410 29474457 chr3R 29474517 29474562 11 106 2.5 4.5 3.5 2.4 152 chr3R 29474410 intron Ptp99A + chr3R 29474486 intron Ptp99A + chr3R 29474562 intron Ptp99A + chr3R_11_29470001 chr3R_29470001 RAL-441 2186 chr3R 29549327 29549343 chr3R 29549429 29549445 5 102 3.5 2.0 2.8 1.3 118 chr3R 29549327 intergenic not near genes chr3R 29549386 intergenic not near genes chr3R 29549445 intergenic not near genes chr3R_5_29545001 chr3R_29545001 RAL-441 2187 chr3R 29581519 29581548 chr3R 29581620 29581649 8 99 5.0 4.0 4.5 1.5 130 chr3R 29581519 intergenic not near genes chr3R 29581584 intergenic not near genes chr3R 29581649 intergenic not near genes chr3R_8_29580001 chr3R_29580001 RAL-441 2188 chr3R 29645825 29645855 chr3R 29645907 29645956 5 90 2.5 1.5 2.0 1.7 131 chr3R 29645825 intron Dop1R2 - chr3R 29645890 intron Dop1R2 - chr3R 29645956 intron Dop1R2 - chr3R_5_29645001 chr3R_29645001 RAL-441 2189 chr3R 29655634 29655659 chr3R 29655733 29655758 6 99 4.5 2.5 3.5 1.3 124 chr3R 29655634 intron Dop1R2 - chr3R 29655696 intron Dop1R2 - chr3R 29655758 intron Dop1R2 - chr3R_6_29655001 chr3R_29655001 RAL-441 2190 chr3R 29738245 29738293 chr3R 29739732 29739779 hobo 18 1484 5.0 1.5 3.2 4.3 1534 chr3R 29738245 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739779 5` UTR CG1969 + chr3R_18_29735001 chr3R_29735001 RAL-441 2191 chr3R 29882008 29882033 chr3R 29891184 29891209 roo 5 9175 5.0 6.0 5.5 0.8 9201 chr3R 29882008 intron CG31038 + chr3R 29886608 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-441 2192 chr3R 29882034 29882051 chr3R 29891181 29891190 roo 8 9164 4.5 5.5 5.0 1.3 9156 chr3R 29882034 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891190 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-441 2193 chr3R 29923607 29923645 chr3R 29925434 29925487 5 1834 3.0 19.0 11.0 0.4 1880 chr3R 29923607 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924547 exon Jon99Cii - chr3R 29925487 exon Jon99Ci - chr3R_5_29920001 chr3R_29920001 RAL-441 2194 chr3R 30001712 30001763 chr3R 30001806 30001827 8 81 6.5 1.5 4.0 1.6 115 chr3R 30001712 intron Tace + chr3R 30001770 intron Tace + chr3R 30001827 intron Tace + chr3R_8_30000001 chr3R_30000001 RAL-441 2195 chr3R 30084865 30084872 chr3R 30086341 30086359 hobo 4 1484 0.0 6.0 3.0 1.0 1494 chr3R 30084865 intron sima + chr3R 30085612 intron sima + chr3R 30086359 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-441 2196 chr3R 30238743 30238795 chr3R 30239927 30239953 1360 9 1180 1.5 2.0 1.8 3.2 1210 chr3R 30238743 intergenic not near genes chr3R 30239348 intergenic not near genes chr3R 30239953 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-441 2197 chr3R 30264462 30264471 chr3R 30264668 30264676 4 206 9.0 0.5 4.8 0.7 214 chr3R 30264462 intergenic not near genes chr3R 30264569 intergenic not near genes chr3R 30264676 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-441 2198 chr3R 30264476 30264505 chr3R 30264664 30264675 4 190 3.0 0.5 1.8 1.4 199 chr3R 30264476 intergenic not near genes chr3R 30264576 intergenic not near genes chr3R 30264675 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-441 2199 chr3R 30268224 30268443 chr3R 30268323 30268526 11 91 7.5 2.5 5.0 1.8 302 chr3R 30268224 intergenic not near genes chr3R 30268375 intergenic not near genes chr3R 30268526 intergenic not near genes chr3R_11_30265001 chr3R_30265001 RAL-441 2200 chr3R 30317313 30317358 chr3R 30324924 30324930 roo 10 7604 1.5 3.5 2.5 2.9 7617 chr3R 30317313 intron hdc + chr3R 30321122 intron hdc + chr3R 30324930 intron hdc + chr3R_10_30320001 chr3R_30320001 RAL-441 2201 chr3R 30332468 30332483 chr3R 30332546 30332551 4 84 1.5 6.0 3.8 0.8 83 chr3R 30332468 intron hdc + chr3R 30332510 intron hdc + chr3R 30332551 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-441 2202 chr3R 30375520 30375561 chr3R 30383165 30383205 412 8 7644 2.0 4.0 3.0 2.0 7685 chr3R 30375520 intergenic not near genes chr3R 30379362 intergenic not near genes chr3R 30383205 intergenic not near genes chr3R_8_30375001 chr3R_30375001 RAL-441 2203 chr3R 30396219 30396234 chr3R 30404499 30404520 roo 4 8284 4.5 6.0 5.2 0.6 8301 chr3R 30396219 intergenic not near genes chr3R 30400370 intergenic not near genes chr3R 30404520 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-441 2204 chr3R 30456377 30456422 chr3R 30456470 30456520 13 96 1.0 3.5 2.2 4.1 143 chr3R 30456377 intergenic CG2224 - chr3R 30456448 3` UTR CG2224 - chr3R 30456520 3` UTR CG2224 - chr3R_13_30455001 chr3R_30455001 RAL-441 2205 chr3R 30458007 30458039 chr3R 30458090 30458139 12 96 2.5 3.0 2.8 3.2 132 chr3R 30458007 intron CG2224 - chr3R 30458073 intron CG2224 - chr3R 30458139 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-441 2206 chr3R 30480462 30480506 chr3R 30482945 30482994 jockey 12 2484 2.0 3.5 2.8 3.2 2532 chr3R 30480462 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482994 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-441 2207 chr3R 30498404 30498430 chr3R 30498624 30498649 11 218 0.0 10.0 5.0 1.8 245 chr3R 30498404 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498649 intron PH4alphaNE1 - chr3R_11_30495001 chr3R_30495001 RAL-441 2208 chr3R 30549002 30549039 chr3R 30549114 30549151 4 112 3.5 6.0 4.8 0.7 149 chr3R 30549002 intron tmod + chr3R 30549076 intron tmod + chr3R 30549151 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-441 2209 chr3R 30554380 30554422 chr3R 30554476 30554518 4 94 3.0 2.5 2.8 1.1 138 chr3R 30554380 intron tmod + chr3R 30554449 intron tmod + chr3R 30554518 intron tmod + chr3R_4_30550001 chr3R_30550001 RAL-441 2210 chr3R 30571706 30571726 chr3R 30571806 30571826 4 100 1.0 6.5 3.8 0.8 120 chr3R 30571706 intron tmod + chr3R 30571766 intron tmod + chr3R 30571826 exon tmod + chr3R_4_30570001 chr3R_30570001 RAL-441 2211 chr3R 30618294 30618303 chr3R 30618391 30618396 5 96 9.0 3.0 6.0 0.7 102 chr3R 30618294 intergenic CG44954 - chr3R 30618345 intergenic CG44954 - chr3R 30618396 intergenic CG44954 - chr3R_5_30615001 chr3R_30615001 RAL-441 2212 chr3R 30618306 30618345 chr3R 30618389 30618415 11 84 4.5 3.0 3.8 2.3 109 chr3R 30618306 intergenic CG44954 - chr3R 30618360 intergenic CG44954 - chr3R 30618415 intergenic CG44954 - chr3R_11_30615001 chr3R_30615001 RAL-441 2213 chr3R 30620818 30620858 chr3R 30620918 30620955 5 93 6.5 6.0 6.2 0.7 137 chr3R 30620818 intron CG44954 - chr3R 30620886 intron CG44954 - chr3R 30620955 intron CG44954 - chr3R_5_30620001 chr3R_30620001 RAL-441 2214 chr3R 30627599 30627636 chr3R 30627683 30627732 12 81 4.5 3.5 4.0 2.4 133 chr3R 30627599 3` UTR CG2267 - chr3R 30627666 exon CG2267 - chr3R 30627732 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-441 2215 chr3R 30649855 30649878 chr3R 30649955 30649974 5 99 2.0 4.5 3.2 1.2 119 chr3R 30649855 3` UTR CG34432 + chr3R 30649914 intergenic CG34432 +,CG34433 + chr3R 30649974 exon CG34433 + chr3R_5_30645001 chr3R_30645001 RAL-441 2216 chr3R 30679499 30679529 chr3R 30686988 30687018 blood 5 7485 8.0 3.5 5.8 0.7 7519 chr3R 30679499 intergenic not near genes chr3R 30683258 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-441 2217 chr3R 30750483 30750536 chr3R 30750581 30750601 8 87 0.5 4.0 2.2 2.5 118 chr3R 30750483 intergenic not near genes chr3R 30750542 intergenic not near genes chr3R 30750601 intergenic not near genes chr3R_8_30750001 chr3R_30750001 RAL-441 2218 chr3R 30791905 30791943 chr3R 30792025 30792056 10 121 3.5 3.5 3.5 2.2 151 chr3R 30791905 exon wts - chr3R 30791980 intron wts - chr3R 30792056 exon wts - chr3R_10_30790001 chr3R_30790001 RAL-441 2219 chr3R 30818793 30818842 chr3R 30820377 30820425 1360 12 1582 3.0 5.0 4.0 2.4 1632 chr3R 30818793 intron cindr + chr3R 30819609 intron cindr + chr3R 30820425 intron cindr + chr3R_12_30815001 chr3R_30815001 RAL-441 2220 chr3R 30859387 30859392 chr3R 30859485 30859490 4 98 8.5 2.5 5.5 0.6 103 chr3R 30859387 intergenic not near genes chr3R 30859438 intergenic not near genes chr3R 30859490 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-441 2221 chr3R 30859393 30859421 chr3R 30859484 30859519 4 96 4.5 2.5 3.5 0.9 126 chr3R 30859393 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859519 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-441 2222 chr3R 30906236 30906281 chr3R 30906335 30906380 6 94 1.0 4.0 2.5 1.7 144 chr3R 30906236 intergenic not near genes chr3R 30906308 intergenic not near genes chr3R 30906380 intergenic not near genes chr3R_6_30905001 chr3R_30905001 RAL-441 2223 chr3R 30973114 30973167 chr3R 30973295 30973347 10 180 1.0 1.5 1.2 4.5 233 chr3R 30973114 intron 5-HT7 - chr3R 30973230 intron 5-HT7 - chr3R 30973347 intron 5-HT7 - chr3R_10_30970001 chr3R_30970001 RAL-441 2224 chr3R 31024146 31024195 chr3R 31024243 31024292 5 95 2.5 2.5 2.5 1.4 146 chr3R 31024146 intergenic not near genes chr3R 31024219 intergenic not near genes chr3R 31024292 intergenic not near genes chr3R_5_31020001 chr3R_31020001 RAL-441 2225 chr3R 31024560 31024584 chr3R 31024629 31024689 8 86 3.5 2.0 2.8 2.1 129 chr3R 31024560 intergenic not near genes chr3R 31024624 intergenic not near genes chr3R 31024689 intergenic not near genes chr3R_8_31020001 chr3R_31020001 RAL-441 2226 chr3R 31042089 31042142 chr3R 31042196 31042249 17 106 5.0 5.0 5.0 2.8 160 chr3R 31042089 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042249 intron CanA1 + chr3R_17_31040001 chr3R_31040001 RAL-441 2227 chr3R 31059290 31059317 chr3R 31059399 31059427 11 106 4.0 5.0 4.5 2.0 137 chr3R 31059290 intron dco - chr3R 31059358 intron dco - chr3R 31059427 intron dco - chr3R_11_31055001 chr3R_31055001 RAL-441 2228 chr3R 31059320 31059334 chr3R 31059397 31059441 4 96 2.5 4.5 3.5 0.9 121 chr3R 31059320 intron dco - chr3R 31059380 intron dco - chr3R 31059441 intron dco - chr3R_4_31055001 chr3R_31055001 RAL-441 2229 chr3R 31074217 31074249 chr3R 31081835 31081867 springer 10 7618 5.0 2.5 3.8 2.1 7650 chr3R 31074217 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081867 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-441 2230 chr3R 31087681 31087697 chr3R 31087871 31087889 4 198 2.5 6.0 4.2 0.8 208 chr3R 31087681 intergenic not near genes chr3R 31087785 intergenic not near genes chr3R 31087889 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-441 2231 chr3R 31137139 31137180 chr3R 31137235 31137246 9 92 5.0 5.0 5.0 1.5 107 chr3R 31137139 intron Gycbeta100B + chr3R 31137192 intron Gycbeta100B + chr3R 31137246 intron Gycbeta100B + chr3R_9_31135001 chr3R_31135001 RAL-441 2232 chr3R 31253060 31253103 chr3R 31253748 31253773 10 675 23.0 28.0 25.5 0.4 713 chr3R 31253060 exon mRpL32 + chr3R 31253416 exon mRpL32 + chr3R 31253773 exon CG1750 - chr3R_10_31250001 chr3R_31250001 RAL-441 2233 chr3R 31320144 31320190 chr3R 31320255 31320303 12 110 2.5 3.0 2.8 3.2 159 chr3R 31320144 intron CG34347 + chr3R 31320224 intron CG34347 + chr3R 31320303 intron CG34347 + chr3R_12_31320001 chr3R_31320001 RAL-441 2234 chr3R 31412689 31412739 chr3R 31412802 31412849 15 110 3.0 3.0 3.0 3.8 160 chr3R 31412689 intron Gprk2 + chr3R 31412769 intron Gprk2 + chr3R 31412849 intron Gprk2 + chr3R_15_31410001 chr3R_31410001 RAL-441 2235 chr3R 31413080 31413118 chr3R 31418287 31418308 copia 13 5212 1.0 1.0 1.0 6.5 5228 chr3R 31413080 intron Gprk2 + chr3R 31415694 intron Gprk2 + chr3R 31418308 intron Gprk2 + chr3R_13_31415001 chr3R_31415001 RAL-441 2236 chr3R 31426871 31426904 chr3R 31426982 31427016 8 110 5.5 6.0 5.8 1.2 145 chr3R 31426871 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427016 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-441 2237 chr3R 31435342 31435385 chr3R 31435514 31435557 19 168 5.0 4.5 4.8 3.3 215 chr3R 31435342 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435557 intron Gprk2 + chr3R_19_31435001 chr3R_31435001 RAL-441 2238 chr3R 31450763 31450784 chr3R 31450924 31450933 4 150 29.5 25.0 27.2 0.1 170 chr3R 31450763 intron Gprk2 + chr3R 31450848 intron Gprk2 + chr3R 31450933 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-441 2239 chr3R 31450757 31450781 chr3R 31450935 31450957 14 161 29.5 21.0 25.2 0.5 200 chr3R 31450757 intron Gprk2 + chr3R 31450857 intron Gprk2 + chr3R 31450957 intron Gprk2 + chr3R_14_31450001 chr3R_31450001 RAL-441 2240 chr3R 31691530 31691544 chr3R 31696316 31696323 Doc 4 4784 2.5 10.5 6.5 0.5 4793 chr3R 31691530 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696323 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-441 2241 chr3R 31808594 31808641 chr3R 31808690 31808737 10 96 3.0 3.5 3.2 2.4 143 chr3R 31808594 intron CG11576 - chr3R 31808666 intron CG11576 - chr3R 31808737 intron CG11576 - chr3R_10_31805001 chr3R_31805001 RAL-441 2242 chr3R 31809240 31809284 chr3R 31809361 31809400 14 117 2.5 2.5 2.5 4.0 160 chr3R 31809240 intron CG11576 - chr3R 31809320 intron CG11576 - chr3R 31809400 intron CG11576 - chr3R_14_31805001 chr3R_31805001 RAL-441 2243 chr3R 31827249 31827293 chr3R 31827348 31827392 12 93 3.5 1.0 2.2 3.8 143 chr3R 31827249 intron RhoGAP100F + chr3R 31827320 intron RhoGAP100F + chr3R 31827392 intron RhoGAP100F + chr3R_12_31825001 chr3R_31825001 RAL-441 2244 chr3R 31885653 31885679 chr3R 31885750 31885775 5 97 6.5 3.0 4.8 0.9 122 chr3R 31885653 intron heph - chr3R 31885714 intron heph - chr3R 31885775 intron heph - chr3R_5_31885001 chr3R_31885001 RAL-441 2245 chr3R 31885686 31885697 chr3R 31885781 31885794 5 97 4.5 8.5 6.5 0.7 108 chr3R 31885686 intron heph - chr3R 31885740 intron heph - chr3R 31885794 intron heph - chr3R_5_31885001 chr3R_31885001 RAL-441 2246 chr3R 31961356 31961368 chr3R 31961459 31961471 6 103 3.0 10.0 6.5 0.8 115 chr3R 31961356 intron heph - chr3R 31961414 intron heph - chr3R 31961471 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-441 2247 chr3R 31962072 31962094 chr3R 31962384 31962419 4 320 2.0 1.0 1.5 1.6 347 chr3R 31962072 intron heph - chr3R 31962246 intron heph - chr3R 31962419 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-441 2248 chr3R 31962458 31962476 chr3R 31962556 31962580 5 102 0.0 5.5 2.8 1.3 122 chr3R 31962458 intron heph - chr3R 31962519 intron heph - chr3R 31962580 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-441 2249 chr3R 31964158 31964187 chr3R 31964273 31964303 9 116 2.0 1.5 1.8 3.2 145 chr3R 31964158 intron heph - chr3R 31964230 intron heph - chr3R 31964303 intron heph - chr3R_9_31960001 chr3R_31960001 RAL-441 2250 chr3R 31976541 31976569 chr3R 31976841 31976870 6 300 0.0 2.5 1.2 2.7 329 chr3R 31976541 intron heph - chr3R 31976706 intron heph - chr3R 31976870 intron heph - chr3R_6_31975001 chr3R_31975001 RAL-441 2251 chr3R 31997974 31997994 chr3R 32005464 32005483 blood 5 7490 10.5 6.0 8.2 0.5 7509 chr3R 31997974 intron heph - chr3R 32001728 intron heph - chr3R 32005483 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-441 2252 chr3R 31998000 31998024 chr3R 32005462 32005471 blood 9 7481 4.5 5.5 5.0 1.5 7471 chr3R 31998000 intron heph - chr3R 32001736 intron heph - chr3R 32005471 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-441 2253 chr4 76481 76505 chr4 81944 81968 I-element 4 5463 6.0 2.0 4.0 0.8 5487 chr4 76481 intron pan + chr4 79224 intron pan + chr4 81968 intron pan + chr4_4_75001 chr4_75001 RAL-441 2254 chr4 319970 320004 chr4 328166 328198 Stalker2 4 8195 3.5 0.5 2.0 1.3 8228 chr4 319970 3` UTR CG32850 + chr4 324084 intron CG32850 + chr4 328198 3` UTR,3` UTR CG32850 +,PMCA - chr4_4_320001 chr4_320001 RAL-441 2255 chr4 336240 336277 chr4 336424 336463 6 184 3.5 5.0 4.2 1.2 223 chr4 336240 intron PMCA - chr4 336352 intron PMCA - chr4 336463 intron PMCA - chr4_6_335001 chr4_335001 RAL-441 2256 chr4 671588 671599 chr4 680190 680202 Tirant 4 8602 9.0 3.5 6.2 0.6 8614 chr4 671588 intron CG11360 + chr4 675895 intron CG11360 + chr4 680202 intron CG11360 + chr4_4_675001 chr4_675001 RAL-441 2257 chr4 671602 671636 chr4 680189 680226 Tirant 15 8597 3.5 3.5 3.5 3.3 8624 chr4 671602 intron CG11360 + chr4 675914 intron CG11360 + chr4 680226 intron CG11360 + chr4_15_675001 chr4_675001 RAL-441 2258 chr4 694889 694921 chr4 694989 695021 8 98 6.0 3.0 4.5 1.5 132 chr4 694889 intron myo - chr4 694955 intron myo - chr4 695021 intron myo - chr4_8_690001 chr4_690001 RAL-441 2259 chr4 847091 847107 chr4 847306 847322 4 215 0.5 2.5 1.5 1.6 231 chr4 847091 intergenic not near genes chr4 847206 intergenic not near genes chr4 847322 intergenic not near genes chr4_4_845001 chr4_845001 RAL-441 2260 chr4 972491 972513 chr4 972574 972609 5 96 2.0 1.5 1.8 1.8 118 chr4 972491 intron fuss - chr4 972550 intron fuss - chr4 972609 intron fuss - chr4_5_970001 chr4_970001 RAL-441 2261 chr4 1171933 1171981 chr4 1172216 1172253 9 281 2.5 3.0 2.8 2.4 320 chr4 1171933 intergenic not near genes chr4 1172093 intergenic pho - chr4 1172253 intergenic pho - chr4_9_1170001 chr4_1170001 RAL-441 2262 chrX 295844 295868 chrX 303483 303506 412 4 7638 5.5 5.0 5.2 0.6 7662 chrX 295844 intron CG3777 + chrX 299675 intron CG3777 + chrX 303506 intron CG3777 + chrX_4_295001 chrX_295001 RAL-441 2263 chrX 318470 318499 chrX 323575 323577 flea 9 5100 2.0 5.0 3.5 2.0 5107 chrX 318470 intron,intron CG3777 +,CG32816 - chrX 321024 intron,intron CG3777 +,CG32816 - chrX 323577 intron,intron CG3777 +,CG32816 - chrX_9_320001 chrX_320001 RAL-441 2264 chrX 428416 428425 chrX 434615 434630 3S18 4 6204 6.0 1.5 3.8 0.8 6214 chrX 428416 intron CG32816 - chrX 431523 intron CG32816 - chrX 434630 intron CG32816 - chrX_4_430001 chrX_430001 RAL-441 2265 chrX 428430 428451 chrX 434603 434655 3S18 4 6197 4.5 1.5 3.0 1.0 6225 chrX 428430 intron CG32816 - chrX 431542 intron CG32816 - chrX 434655 intron CG32816 - chrX_4_430001 chrX_430001 RAL-441 2266 chrX 551405 551454 chrX 558987 559020 412 7 7577 2.0 3.0 2.5 2.0 7615 chrX 551405 intron Appl + chrX 555212 intron Appl + chrX 559020 intron Appl + chrX_7_555001 chrX_555001 RAL-441 2267 chrX 609865 609917 chrX 609977 610003 10 104 3.0 1.0 2.0 3.3 138 chrX 609865 intron CG13366 - chrX 609934 intron CG13366 - chrX 610003 intron CG13366 - chrX_10_605001 chrX_605001 RAL-441 2268 chrX 735178 735188 chrX 736266 736303 6 1104 12.0 22.0 17.0 0.3 1125 chrX 735178 intron sdk + chrX 735740 intron sdk + chrX 736303 intron sdk + chrX_6_735001 chrX_735001 RAL-441 2269 chrX 802269 802311 chrX 802365 802400 4 93 2.5 4.0 3.2 1.0 131 chrX 802269 exon CG13359 - chrX 802334 exon CG13359 - chrX 802400 exon CG13359 - chrX_4_800001 chrX_800001 RAL-441 2270 chrX 812259 812297 chrX 817910 817947 297 5 5650 2.5 3.0 2.8 1.3 5688 chrX 812259 intron CG43867 - chrX 815103 intron CG43867 - chrX 817947 intron CG43867 - chrX_5_815001 chrX_815001 RAL-441 2271 chrX 827584 827602 chrX 835395 835395 roo 6 7806 11.0 3.5 7.2 0.7 7811 chrX 827584 intron CG43867 - chrX 831490 intron CG43867 - chrX 835395 intron CG43867 - chrX_6_830001 chrX_830001 RAL-441 2272 chrX 827611 827635 chrX 835391 835428 roo 7 7796 4.5 3.0 3.8 1.5 7817 chrX 827611 intron CG43867 - chrX 831520 intron CG43867 - chrX 835428 intron CG43867 - chrX_7_830001 chrX_830001 RAL-441 2273 chrX 865664 865713 chrX 865765 865813 13 99 2.0 4.5 3.2 3.1 149 chrX 865664 intron CG43867 - chrX 865738 intron CG43867 - chrX 865813 intron CG43867 - chrX_13_865001 chrX_865001 RAL-441 2274 chrX 906681 906730 chrX 908490 908539 S-element 10 1807 2.5 10.0 6.2 1.4 1858 chrX 906681 intron CG43867 - chrX 907610 intron CG43867 - chrX 908539 intron CG43867 - chrX_10_905001 chrX_905001 RAL-441 2275 chrX 911194 911210 chrX 911449 911466 5 253 4.0 4.0 4.0 1.0 272 chrX 911194 intron CG43867 - chrX 911330 intron CG43867 - chrX 911466 intron CG43867 - chrX_5_910001 chrX_910001 RAL-441 2276 chrX 911225 911236 chrX 911442 911458 5 241 1.5 3.5 2.5 1.4 233 chrX 911225 intron CG43867 - chrX 911342 intron CG43867 - chrX 911458 intron CG43867 - chrX_5_910001 chrX_910001 RAL-441 2277 chrX 1051064 1051091 chrX 1051162 1051187 9 97 8.5 9.0 8.8 0.9 123 chrX 1051064 intron CR44779 + chrX 1051126 intron CR44779 + chrX 1051187 intron CR44779 + chrX_9_1050001 chrX_1050001 RAL-441 2278 chrX 1253723 1253762 chrX 1253822 1253860 11 101 1.0 5.5 3.2 2.6 137 chrX 1253723 intron Atf3 - chrX 1253792 intron Atf3 - chrX 1253860 intron Atf3 - chrX_11_1250001 chrX_1250001 RAL-441 2279 chrX 1357759 1357794 chrX 1367949 1367983 Doc 9 10190 5.5 2.0 3.8 1.9 10224 chrX 1357759 intergenic png - chrX 1362871 intergenic not near genes chrX 1367983 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-441 2280 chrX 1416397 1416420 chrX 1416478 1416519 6 94 2.0 6.0 4.0 1.2 122 chrX 1416397 intron futsch + chrX 1416458 intron futsch + chrX 1416519 intron futsch + chrX_6_1415001 chrX_1415001 RAL-441 2281 chrX 1518033 1518064 chrX 1523452 1523486 jockey 9 5416 4.5 10.0 7.2 1.1 5453 chrX 1518033 intergenic inc + chrX 1520760 intergenic not near genes chrX 1523486 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-441 2282 chrX 1560641 1560663 chrX 1560753 1560774 4 110 2.0 0.5 1.2 1.8 133 chrX 1560641 intron Mur2B - chrX 1560708 intron Mur2B - chrX 1560774 intron Mur2B - chrX_4_1560001 chrX_1560001 RAL-441 2283 chrX 1674856 1674905 chrX 1674964 1674982 5 102 3.0 4.5 3.8 1.0 126 chrX 1674856 3` UTR CG32809 - chrX 1674919 3` UTR CG32809 - chrX 1674982 3` UTR CG32809 - chrX_5_1670001 chrX_1670001 RAL-441 2284 chrX 1930549 1930567 chrX 1938115 1938116 opus 5 7573 1.5 4.0 2.8 1.3 7567 chrX 1930549 intergenic CG11596 + chrX 1934332 intergenic not near genes chrX 1938116 3` UTR CG3857 - chrX_5_1930001 chrX_1930001 RAL-441 2285 chrX 2376741 2376787 chrX 2376844 2376891 9 102 2.5 4.0 3.2 2.1 150 chrX 2376741 intron PsGEF - chrX 2376816 intron PsGEF - chrX 2376891 intron PsGEF - chrX_9_2375001 chrX_2375001 RAL-441 2286 chrX 2399841 2399868 chrX 2408193 2408236 roo 4 8365 2.5 7.5 5.0 0.7 8395 chrX 2399841 intergenic not near genes chrX 2404038 intergenic not near genes chrX 2408236 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-441 2287 chrX 2419682 2419731 chrX 2419790 2419837 11 107 2.0 2.0 2.0 3.7 155 chrX 2419682 intergenic not near genes chrX 2419760 intergenic not near genes chrX 2419837 intergenic not near genes chrX_11_2415001 chrX_2415001 RAL-441 2288 chrX 2454456 2454493 chrX 2454555 2454593 10 94 3.5 3.0 3.2 2.4 137 chrX 2454456 intron boi - chrX 2454524 intron boi - chrX 2454593 intron boi - chrX_10_2450001 chrX_2450001 RAL-441 2289 chrX 2495331 2495382 chrX 2495466 2495519 8 127 4.5 3.0 3.8 1.7 188 chrX 2495331 intron trol - chrX 2495425 intron trol - chrX 2495519 intron trol - chrX_8_2495001 chrX_2495001 RAL-441 2290 chrX 2562325 2562363 chrX 2562473 2562485 4 132 3.5 2.0 2.8 1.1 160 chrX 2562325 intron Pdfr + chrX 2562405 intron Pdfr + chrX 2562485 intron Pdfr + chrX_4_2560001 chrX_2560001 RAL-441 2291 chrX 2578798 2578812 chrX 2578904 2578905 6 107 6.5 5.5 6.0 0.9 107 chrX 2578798 intergenic Pdfr +,Vha36-3 - chrX 2578852 intergenic Pdfr +,Vha36-3 - chrX 2578905 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-441 2292 chrX 2578816 2578832 chrX 2578898 2578938 5 102 4.5 4.5 4.5 0.9 122 chrX 2578816 intergenic Pdfr +,Vha36-3 - chrX 2578877 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-441 2293 chrX 2664370 2664417 chrX 2665534 2665582 1360 11 1165 3.0 4.5 3.8 2.3 1212 chrX 2664370 intron sgg + chrX 2664976 intron sgg + chrX 2665582 intron sgg + chrX_11_2660001 chrX_2660001 RAL-441 2294 chrX 2844882 2844932 chrX 2852310 2852362 mdg1 7 7428 3.0 4.5 3.8 1.5 7480 chrX 2844882 intron kirre + chrX 2848622 intron kirre + chrX 2852362 intron kirre + chrX_7_2845001 chrX_2845001 RAL-441 2295 chrX 3058006 3058045 chrX 3058267 3058306 pogo 4 261 3.0 3.0 3.0 1.0 300 chrX 3058006 intron kirre + chrX 3058156 intron kirre + chrX 3058306 intron kirre + chrX_4_3055001 chrX_3055001 RAL-441 2296 chrX 3109425 3109469 chrX 3109522 3109558 11 96 4.5 3.5 4.0 2.2 133 chrX 3109425 intron kirre + chrX 3109492 intron kirre + chrX 3109558 intron kirre + chrX_11_3105001 chrX_3105001 RAL-441 2297 chrX 3365609 3365636 chrX 3365782 3365808 5 173 4.0 2.0 3.0 1.2 199 chrX 3365609 intergenic not near genes chrX 3365708 intergenic not near genes chrX 3365808 intergenic not near genes chrX_5_3365001 chrX_3365001 RAL-441 2298 chrX 3437421 3437451 chrX 3437515 3437547 5 92 5.5 2.5 4.0 1.0 126 chrX 3437421 intron,intron CR44999 +,CG12535 - chrX 3437484 intron,intron CR44999 +,CG12535 - chrX 3437547 intron,intron CR44999 +,CG12535 - chrX_5_3435001 chrX_3435001 RAL-441 2299 chrX 3459977 3460006 chrX 3460074 3460103 7 97 5.0 3.5 4.2 1.3 126 chrX 3459977 intron,intron CR44999 +,CG16782 - chrX 3460040 intron,5` UTR CR44999 +,CG16782 - chrX 3460103 intron,5` UTR CR44999 +,CG16782 - chrX_7_3460001 chrX_3460001 RAL-441 2300 chrX 3493071 3493112 chrX 3502250 3502291 roo 7 9178 3.5 1.0 2.2 2.2 9220 chrX 3493071 intron,intron CR44999 +,Gas8 - chrX 3497681 intron,intron CR44999 +,Gas8 - chrX 3502291 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-441 2301 chrX 3597531 3597582 chrX 3619719 3619770 roo 19 22185 3.0 2.0 2.5 5.4 22239 chrX 3597531 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619770 intron AstA-R1 + chrX_19_3605001 chrX_3605001 RAL-441 2302 chrX 3657398 3657441 chrX 3657492 3657522 14 90 3.5 3.0 3.2 3.3 124 chrX 3657398 intron AstA-R1 + chrX 3657460 intron AstA-R1 + chrX 3657522 intron AstA-R1 + chrX_14_3655001 chrX_3655001 RAL-441 2303 chrX 3662480 3662492 chrX 3662562 3662596 4 93 4.5 1.0 2.8 1.1 116 chrX 3662480 intron AstA-R1 + chrX 3662538 intron AstA-R1 + chrX 3662596 intron AstA-R1 + chrX_4_3660001 chrX_3660001 RAL-441 2304 chrX 3712382 3712411 chrX 3712684 3712714 6 301 0.0 3.0 1.5 2.4 332 chrX 3712382 intron Rala - chrX 3712548 intron Rala - chrX 3712714 intron Rala - chrX_6_3710001 chrX_3710001 RAL-441 2305 chrX 3726761 3726797 chrX 3730177 3730181 NOF 4 3408 4.0 0.5 2.2 1.2 3420 chrX 3726761 intron tlk + chrX 3728471 intron tlk + chrX 3730181 intron tlk + chrX_4_3725001 chrX_3725001 RAL-441 2306 chrX 3840229 3840267 chrX 3840330 3840356 7 95 4.0 1.0 2.5 2.0 127 chrX 3840229 intron ec + chrX 3840292 intron ec + chrX 3840356 intron ec + chrX_7_3840001 chrX_3840001 RAL-441 2307 chrX 3842312 3842352 chrX 3842572 3842611 pogo 13 261 2.5 4.5 3.5 2.9 299 chrX 3842312 intron ec + chrX 3842462 intron ec + chrX 3842611 intron ec + chrX_13_3840001 chrX_3840001 RAL-441 2308 chrX 3950781 3950811 chrX 3950876 3950890 9 96 2.5 1.0 1.8 3.2 109 chrX 3950781 intron Vap-33A + chrX 3950836 intron Vap-33A + chrX 3950890 intron Vap-33A + chrX_9_3950001 chrX_3950001 RAL-441 2309 chrX 3986843 3986894 chrX 3994496 3994547 412 10 7647 4.0 4.5 4.2 1.9 7704 chrX 3986843 intergenic not near genes chrX 3990695 intergenic not near genes chrX 3994547 intergenic not near genes chrX_10_3990001 chrX_3990001 RAL-441 2310 chrX 4048482 4048521 chrX 4048577 4048617 7 96 4.0 2.0 3.0 1.8 135 chrX 4048482 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048617 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-441 2311 chrX 4101846 4101895 chrX 4101944 4101983 6 96 2.0 1.5 1.8 2.1 137 chrX 4101846 exon CG15375 + chrX 4101914 exon CG15375 + chrX 4101983 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-441 2312 chrX 4157881 4157915 chrX 4164953 4164970 297 8 7071 5.0 4.0 4.5 1.5 7089 chrX 4157881 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164970 intron Fas2 - chrX_8_4160001 chrX_4160001 RAL-441 2313 chrX 4216327 4216338 chrX 4216422 4216432 5 96 6.5 5.5 6.0 0.7 105 chrX 4216327 intergenic not near genes chrX 4216380 intergenic CG15571 - chrX 4216432 intergenic CG15571 - chrX_5_4215001 chrX_4215001 RAL-441 2314 chrX 4262757 4262784 chrX 4262853 4262903 10 112 0.5 5.5 3.0 2.5 146 chrX 4262757 intergenic not near genes chrX 4262830 intergenic not near genes chrX 4262903 intergenic not near genes chrX_10_4260001 chrX_4260001 RAL-441 2315 chrX 4267297 4267348 chrX 4267397 4267448 12 99 2.0 3.0 2.5 3.4 151 chrX 4267297 intergenic not near genes chrX 4267372 intergenic not near genes chrX 4267448 intergenic not near genes chrX_12_4265001 chrX_4265001 RAL-441 2316 chrX 4276461 4276490 chrX 4276559 4276589 8 95 6.0 4.0 5.0 1.3 128 chrX 4276461 intergenic CG15577 -,CR45483 - chrX 4276525 3` UTR CG15577 - chrX 4276589 3` UTR CG15577 - chrX_8_4275001 chrX_4275001 RAL-441 2317 chrX 4324377 4324415 chrX 4324471 4324512 9 95 0.5 2.5 1.5 3.6 135 chrX 4324377 intron norpA + chrX 4324444 intron norpA + chrX 4324512 intron norpA + chrX_9_4320001 chrX_4320001 RAL-441 2318 chrX 4415288 4415335 chrX 4415384 4415430 8 91 2.5 4.5 3.5 1.8 142 chrX 4415288 intron,intron CR32773 -,bi + chrX 4415359 intron,intron CR32773 -,bi + chrX 4415430 intron,intron CR32773 -,bi + chrX_8_4415001 chrX_4415001 RAL-441 2319 chrX 4436468 4436496 chrX 4436535 4436599 4 94 1.0 1.0 1.0 2.0 131 chrX 4436468 intron,intron CR32773 -,bi + chrX 4436534 intron,intron CR32773 -,bi + chrX 4436599 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-441 2320 chrX 4574882 4574931 chrX 4574993 4575041 5 111 1.5 0.0 0.8 2.8 159 chrX 4574882 intron CR32773 - chrX 4574962 intron CR32773 - chrX 4575041 intron CR32773 - chrX_5_4570001 chrX_4570001 RAL-441 2321 chrX 4575596 4575645 chrX 4575705 4575754 11 108 2.5 2.0 2.2 3.4 158 chrX 4575596 intron CR32773 - chrX 4575675 intron CR32773 - chrX 4575754 intron CR32773 - chrX_11_4575001 chrX_4575001 RAL-441 2322 chrX 4700376 4700415 chrX 4700739 4700777 jockey 9 361 1.5 1.5 1.5 3.6 401 chrX 4700376 3` UTR ctp + chrX 4700576 3` UTR ctp + chrX 4700777 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-441 2323 chrX 4763257 4763282 chrX 4763735 4763790 Stalker4 5 491 3.5 3.0 3.2 1.2 533 chrX 4763257 intergenic not near genes chrX 4763524 intergenic not near genes chrX 4763790 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-441 2324 chrX 4792367 4792403 chrX 4792815 4792856 jockey 5 452 1.5 4.0 2.8 1.3 489 chrX 4792367 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792856 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-441 2325 chrX 4827971 4827984 chrX 4835351 4835375 Stalker4 4 7381 3.0 3.5 3.2 1.0 7404 chrX 4827971 intergenic not near genes chrX 4831673 intergenic not near genes chrX 4835375 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-441 2326 chrX 4827995 4828002 chrX 4835342 4835373 Stalker4 6 7354 2.0 2.5 2.2 1.9 7378 chrX 4827995 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835373 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-441 2327 chrX 4848753 4848788 chrX 4848876 4848911 11 122 2.0 5.0 3.5 2.4 158 chrX 4848753 intron CG42594 + chrX 4848832 intron CG42594 + chrX 4848911 intron CG42594 + chrX_11_4845001 chrX_4845001 RAL-441 2328 chrX 4885797 4885807 chrX 4885867 4885890 5 76 0.5 1.0 0.8 2.8 93 chrX 4885797 intron CG42594 + chrX 4885844 intron CG42594 + chrX 4885890 intron CG42594 + chrX_5_4885001 chrX_4885001 RAL-441 2329 chrX 4931330 4931369 chrX 4931444 4931478 8 110 23.0 21.0 22.0 0.3 148 chrX 4931330 intron CG44774 - chrX 4931404 intron CG44774 - chrX 4931478 intron CG44774 - chrX_8_4930001 chrX_4930001 RAL-441 2330 chrX 4987559 4987564 chrX 4987631 4987665 4 90 4.0 3.0 3.5 0.9 106 chrX 4987559 intron CR44833 - chrX 4987612 intron CR44833 - chrX 4987665 intron CR44833 - chrX_4_4985001 chrX_4985001 RAL-441 2331 chrX 4987565 4987576 chrX 4987625 4987632 6 83 2.5 2.5 2.5 1.7 67 chrX 4987565 intron CR44833 - chrX 4987598 intron CR44833 - chrX 4987632 intron CR44833 - chrX_6_4985001 chrX_4985001 RAL-441 2332 chrX 4988910 4988924 chrX 4988998 4989042 6 102 1.0 1.0 1.0 3.0 132 chrX 4988910 intron CR44833 - chrX 4988976 intron CR44833 - chrX 4989042 intron CR44833 - chrX_6_4985001 chrX_4985001 RAL-441 2333 chrX 4990041 4990073 chrX 4997274 4997307 roo 10 7232 1.5 2.5 2.0 3.3 7266 chrX 4990041 intron CR44833 - chrX 4993674 intron CR44833 - chrX 4997307 intron CR44833 - chrX_10_4990001 chrX_4990001 RAL-441 2334 chrX 5055839 5055869 chrX 5055991 5056020 8 151 3.5 3.0 3.2 1.9 181 chrX 5055839 intron,intron CR44833 -,ovo + chrX 5055930 intron,intron CR44833 -,ovo + chrX 5056020 intron,intron CR44833 -,ovo + chrX_8_5055001 chrX_5055001 RAL-441 2335 chrX 5096259 5096299 chrX 5103844 5103884 springer 8 7580 1.0 4.0 2.5 2.3 7625 chrX 5096259 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103884 intron,intron CG15465 +,rg + chrX_8_5100001 chrX_5100001 RAL-441 2336 chrX 5159706 5159750 chrX 5159821 5159865 8 113 1.5 1.5 1.5 3.2 159 chrX 5159706 intron,intron CG15465 +,rg + chrX 5159786 intron,intron CG15465 +,rg + chrX 5159865 intron,intron CG15465 +,rg + chrX_8_5155001 chrX_5155001 RAL-441 2337 chrX 5338695 5338732 chrX 5339967 5339983 jockey 7 1268 3.0 2.0 2.5 2.0 1288 chrX 5338695 intergenic not near genes chrX 5339339 intergenic not near genes chrX 5339983 intergenic SK + chrX_7_5335001 chrX_5335001 RAL-441 2338 chrX 5349259 5349307 chrX 5349355 5349385 9 94 3.5 2.0 2.8 2.4 126 chrX 5349259 intron SK + chrX 5349322 intron SK + chrX 5349385 intron SK + chrX_9_5345001 chrX_5345001 RAL-441 2339 chrX 5441989 5442005 chrX 5442115 5442133 5 127 3.5 9.5 6.5 0.7 144 chrX 5441989 intergenic not near genes chrX 5442061 intergenic not near genes chrX 5442133 intergenic not near genes chrX_5_5440001 chrX_5440001 RAL-441 2340 chrX 5442011 5442019 chrX 5442097 5442147 5 113 0.0 6.0 3.0 1.2 136 chrX 5442011 intergenic not near genes chrX 5442079 intergenic not near genes chrX 5442147 intergenic not near genes chrX_5_5440001 chrX_5440001 RAL-441 2341 chrX 5473592 5473620 chrX 5473671 5473677 5 79 3.5 5.5 4.5 0.9 85 chrX 5473592 intron SPR + chrX 5473634 intron SPR + chrX 5473677 intron SPR + chrX_5_5470001 chrX_5470001 RAL-441 2342 chrX 5487492 5487513 chrX 5487765 5487789 6 274 7.5 2.0 4.8 1.0 297 chrX 5487492 intron SPR + chrX 5487640 intron SPR + chrX 5487789 intron SPR + chrX_6_5485001 chrX_5485001 RAL-441 2343 chrX 5524834 5524846 chrX 5528717 5528729 412 4 3883 2.0 0.5 1.2 1.8 3895 chrX 5524834 intergenic snoRNA:Psi28S-3342 - chrX 5526782 intergenic not near genes chrX 5528729 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-441 2344 chrX 5542133 5542152 chrX 5542237 5542256 9 103 1.5 5.0 3.2 2.1 123 chrX 5542133 intron Vsx2 - chrX 5542194 intron Vsx2 - chrX 5542256 intron Vsx2 - chrX_9_5540001 chrX_5540001 RAL-441 2345 chrX 5550971 5551001 chrX 5551125 5551150 6 156 1.5 6.0 3.8 1.2 179 chrX 5550971 intron Vsx2 - chrX 5551060 intron Vsx2 - chrX 5551150 intron Vsx2 - chrX_6_5550001 chrX_5550001 RAL-441 2346 chrX 5579531 5579560 chrX 5579647 5579703 6 126 2.0 3.0 2.5 1.7 172 chrX 5579531 intergenic not near genes chrX 5579617 intergenic not near genes chrX 5579703 intergenic not near genes chrX_6_5575001 chrX_5575001 RAL-441 2347 chrX 5716774 5716818 chrX 5716919 5716965 9 142 3.0 4.0 3.5 2.0 191 chrX 5716774 intron CG33080 - chrX 5716870 intron CG33080 - chrX 5716965 intron CG33080 - chrX_9_5715001 chrX_5715001 RAL-441 2348 chrX 5725019 5725034 chrX 5725134 5725158 4 121 5.5 2.0 3.8 0.8 139 chrX 5725019 intron CG32758 - chrX 5725088 intron CG32758 - chrX 5725158 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-441 2349 chrX 5727404 5727416 chrX 5732162 5732175 Doc 8 4758 3.0 3.0 3.0 2.0 4771 chrX 5727404 intron CG32758 - chrX 5729790 intron CG32758 - chrX 5732175 intron CG32758 - chrX_8_5725001 chrX_5725001 RAL-441 2350 chrX 5798857 5798889 chrX 5799024 5799071 6 171 1.5 2.5 2.0 2.0 214 chrX 5798857 intergenic not near genes chrX 5798964 intergenic not near genes chrX 5799071 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-441 2351 chrX 5883789 5883840 chrX 5884050 5884101 pogo 11 260 3.0 2.5 2.8 2.9 312 chrX 5883789 intron CR45668 - chrX 5883945 intron CR45668 - chrX 5884101 intron CR45668 - chrX_11_5880001 chrX_5880001 RAL-441 2352 chrX 5884142 5884189 chrX 5884403 5884450 pogo 17 258 5.0 3.0 4.0 3.4 308 chrX 5884142 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884450 intron CR45668 - chrX_17_5880001 chrX_5880001 RAL-441 2353 chrX 6118676 6118731 chrX 6118778 6118831 14 94 4.0 3.5 3.8 2.9 155 chrX 6118676 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118831 intron Ca-alpha1T - chrX_14_6115001 chrX_6115001 RAL-441 2354 chrX 6171568 6171614 chrX 6179018 6179047 Quasimodo 8 7443 2.5 4.5 3.5 1.8 7479 chrX 6171568 intron Ca-alpha1T - chrX 6175308 intron Ca-alpha1T - chrX 6179047 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-441 2355 chrX 6215508 6215526 chrX 6215609 6215621 7 99 5.5 6.0 5.8 1.0 113 chrX 6215508 intergenic not near genes chrX 6215564 intergenic not near genes chrX 6215621 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-441 2356 chrX 6335235 6335243 chrX 6337727 6337773 Tirant 6 2518 0.0 5.5 2.8 1.6 2538 chrX 6335235 intergenic not near genes chrX 6336504 intergenic not near genes chrX 6337773 5` UTR CG3842 + chrX_6_6335001 chrX_6335001 RAL-441 2357 chrX 6392883 6392890 chrX 6397667 6397675 Doc 4 4784 2.0 0.5 1.2 1.8 4792 chrX 6392883 intergenic not near genes chrX 6395279 intergenic not near genes chrX 6397675 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-441 2358 chrX 6487962 6487982 chrX 6488064 6488083 6 102 4.5 5.5 5.0 1.0 121 chrX 6487962 intron CG42340 - chrX 6488022 intron CG42340 - chrX 6488083 intron CG42340 - chrX_6_6485001 chrX_6485001 RAL-441 2359 chrX 6562810 6562834 chrX 6571298 6571329 Tirant 6 8496 4.0 2.0 3.0 1.5 8519 chrX 6562810 intron CG34417 + chrX 6567070 intron CG34417 + chrX 6571329 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-441 2360 chrX 6591849 6591857 chrX 6591950 6591962 4 104 4.5 0.0 2.2 1.2 113 chrX 6591849 intron Pat1 + chrX 6591906 intron Pat1 + chrX 6591962 intron Pat1 + chrX_4_6590001 chrX_6590001 RAL-441 2361 chrX 6605460 6605497 chrX 6608502 6608539 Burdock 7 3042 2.0 5.0 3.5 1.6 3079 chrX 6605460 intron pigs + chrX 6607000 intron pigs + chrX 6608539 intron pigs + chrX_7_6605001 chrX_6605001 RAL-441 2362 chrX 6618452 6618472 chrX 6618544 6618569 4 94 7.5 6.5 7.0 0.5 117 chrX 6618452 intron pigs + chrX 6618510 intron pigs + chrX 6618569 intron pigs + chrX_4_6615001 chrX_6615001 RAL-441 2363 chrX 6737506 6737543 chrX 6737602 6737616 8 89 3.0 4.5 3.8 1.7 110 chrX 6737506 intron CG3168 - chrX 6737561 intron CG3168 - chrX 6737616 intron CG3168 - chrX_8_6735001 chrX_6735001 RAL-441 2364 chrX 6792067 6792081 chrX 6792172 6792187 4 106 3.0 2.0 2.5 1.1 120 chrX 6792067 intron C3G - chrX 6792127 intron C3G - chrX 6792187 intron C3G - chrX_4_6790001 chrX_6790001 RAL-441 2365 chrX 6794997 6795028 chrX 6795102 6795108 5 100 4.5 4.0 4.2 1.0 111 chrX 6794997 intron C3G - chrX 6795052 intron C3G - chrX 6795108 intron C3G - chrX_5_6795001 chrX_6795001 RAL-441 2366 chrX 6897570 6897578 chrX 7243786 7243792 4 346216 0.0 3.5 1.8 1.4 346222 chrX 6897570 intergenic not near genes chrX 7070681 exon CG4607 + chrX 7243792 intron CR44357 - chrX_4_7070001 chrX_7070001 RAL-441 2367 chrX 6897597 6897693 chrX 6897665 6897813 14 124 1.5 1.5 1.5 5.6 216 chrX 6897597 intergenic not near genes chrX 6897705 intergenic not near genes chrX 6897813 intergenic not near genes chrX_14_6895001 chrX_6895001 RAL-441 2368 chrX 6901363 6901387 chrX 6901456 6901456 7 91 1.0 5.0 3.0 1.8 93 chrX 6901363 intergenic not near genes chrX 6901410 intergenic not near genes chrX 6901456 intergenic not near genes chrX_7_6900001 chrX_6900001 RAL-441 2369 chrX 6989489 6989529 chrX 6989596 6989635 6 107 3.0 7.0 5.0 1.0 146 chrX 6989489 intron ogre - chrX 6989562 intron ogre - chrX 6989635 intron ogre - chrX_6_6985001 chrX_6985001 RAL-441 2370 chrX 7023588 7023626 chrX 7030998 7031036 Tabor 9 7409 5.0 3.5 4.2 1.7 7448 chrX 7023588 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031036 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-441 2371 chrX 7125251 7125256 chrX 7134430 7134433 roo 4 9178 1.5 4.0 2.8 1.1 9182 chrX 7125251 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134433 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-441 2372 chrX 7470207 7470216 chrX 7470315 7470324 4 108 0.5 2.5 1.5 1.6 117 chrX 7470207 intergenic not near genes chrX 7470266 intergenic not near genes chrX 7470324 intergenic not near genes chrX_4_7470001 chrX_7470001 RAL-441 2373 chrX 7702889 7702928 chrX 7703344 7703387 jockey 14 455 3.5 3.0 3.2 3.3 498 chrX 7702889 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703387 intron CHES-1-like - chrX_14_7700001 chrX_7700001 RAL-441 2374 chrX 7737147 7737163 chrX 7737249 7737265 6 102 3.0 2.5 2.8 1.6 118 chrX 7737147 5` UTR Tom40 + chrX 7737206 intron Tom40 + chrX 7737265 intron Tom40 + chrX_6_7735001 chrX_7735001 RAL-441 2375 chrX 8031412 8031465 chrX 8035741 8035785 Juan 9 4328 4.5 4.5 4.5 1.6 4373 chrX 8031412 intergenic not near genes chrX 8033598 intergenic not near genes chrX 8035785 3` UTR CG2233 - chrX_9_8030001 chrX_8030001 RAL-441 2376 chrX 8092268 8092319 chrX 8092373 8092424 9 101 3.5 1.5 2.5 2.6 156 chrX 8092268 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092424 intron Ubc-E2H - chrX_9_8090001 chrX_8090001 RAL-441 2377 chrX 8337862 8337909 chrX 8338371 8338419 7 503 1.5 2.0 1.8 2.5 557 chrX 8337862 intron nAChRalpha3 - chrX 8338140 intron nAChRalpha3 - chrX 8338419 intron nAChRalpha3 - chrX_7_8335001 chrX_8335001 RAL-441 2378 chrX 8364839 8364871 chrX 8365255 8365285 BS 11 416 2.5 2.5 2.5 3.1 446 chrX 8364839 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365285 intron nAChRalpha3 - chrX_11_8365001 chrX_8365001 RAL-441 2379 chrX 8708690 8708738 chrX 8708853 8708901 18 165 24.5 9.5 17.0 1.0 211 chrX 8708690 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708901 intergenic not near genes chrX_18_8705001 chrX_8705001 RAL-441 2380 chrX 8772235 8772250 chrX 8772331 8772347 5 97 5.0 3.5 4.2 1.0 112 chrX 8772235 intron Lim1 - chrX 8772291 intron Lim1 - chrX 8772347 intron Lim1 - chrX_5_8770001 chrX_8770001 RAL-441 2381 chrX 8922315 8922358 chrX 8922765 8922812 jockey 9 450 2.5 4.5 3.5 2.0 497 chrX 8922315 intron rdgA + chrX 8922564 intron rdgA + chrX 8922812 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-441 2382 chrX 8948754 8948789 chrX 8956284 8956319 roo 7 7529 3.0 5.5 4.2 1.3 7565 chrX 8948754 intron rdgA + chrX 8952536 intron rdgA + chrX 8956319 intron rdgA + chrX_7_8950001 chrX_8950001 RAL-441 2383 chrX 9129458 9129495 chrX 9129563 9129598 12 100 6.0 4.5 5.2 1.9 140 chrX 9129458 intron fend - chrX 9129528 intron fend - chrX 9129598 intron fend - chrX_12_9125001 chrX_9125001 RAL-441 2384 chrX 9337956 9337969 chrX 9338033 9338080 7 97 3.0 3.5 3.2 1.7 124 chrX 9337956 intron CG34449 - chrX 9338018 intron CG34449 - chrX 9338080 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-441 2385 chrX 9508130 9508163 chrX 9509668 9509701 jockey 7 1538 3.0 5.0 4.0 1.4 1571 chrX 9508130 intron CG32700 - chrX 9508916 intron CG32700 - chrX 9509701 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-441 2386 chrX 9531638 9531660 chrX 9531738 9531757 4 98 6.0 0.0 3.0 1.0 119 chrX 9531638 intron CG32700 - chrX 9531698 intron CG32700 - chrX 9531757 intron CG32700 - chrX_4_9530001 chrX_9530001 RAL-441 2387 chrX 9575786 9575803 chrX 9576114 9576130 mdg3 5 332 4.0 4.0 4.0 1.0 344 chrX 9575786 intron,exon CG32699 -,CG42395 - chrX 9575958 intron,intron CG32699 -,CG42395 - chrX 9576130 intron,exon CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-441 2388 chrX 9575805 9575818 chrX 9576113 9576157 mdg3 6 337 3.0 4.0 3.5 1.3 352 chrX 9575805 intron,exon CG32699 -,CG42395 - chrX 9575981 intron,intron CG32699 -,CG42395 - chrX 9576157 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-441 2389 chrX 9758031 9758065 chrX 9758135 9758170 8 104 5.5 0.0 2.8 2.1 139 chrX 9758031 intergenic not near genes chrX 9758100 intergenic not near genes chrX 9758170 intergenic not near genes chrX_8_9755001 chrX_9755001 RAL-441 2390 chrX 9791841 9791891 chrX 9791958 9792008 14 112 2.5 2.0 2.2 4.4 167 chrX 9791841 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9792008 intron CG32698 + chrX_14_9790001 chrX_9790001 RAL-441 2391 chrX 9839330 9839375 chrX 9839425 9839466 4 98 0.0 4.0 2.0 1.3 136 chrX 9839330 intron CG32698 + chrX 9839398 intron CG32698 + chrX 9839466 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-441 2392 chrX 10138216 10138248 chrX 10145738 10145772 412 4 7523 4.5 0.5 2.5 1.1 7556 chrX 10138216 intron,intron RhoU +,CR44894 - chrX 10141994 intron,intron RhoU +,CR44894 - chrX 10145772 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-441 2393 chrX 10149995 10150036 chrX 10150238 10150278 11 241 2.0 1.5 1.8 3.9 283 chrX 10149995 intron CR44894 - chrX 10150136 intron CR44894 - chrX 10150278 intron CR44894 - chrX_11_10150001 chrX_10150001 RAL-441 2394 chrX 10348784 10348820 chrX 10356368 10356403 springer 6 7584 1.0 2.0 1.5 2.4 7619 chrX 10348784 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356403 intergenic l(1)G0289 - chrX_6_10350001 chrX_10350001 RAL-441 2395 chrX 10453054 10453098 chrX 10453265 10453309 6 211 1.5 2.5 2.0 2.0 255 chrX 10453054 intron CG32683 - chrX 10453182 intron CG32683 - chrX 10453309 intron CG32683 - chrX_6_10450001 chrX_10450001 RAL-441 2396 chrX 10550839 10550868 chrX 10552326 10552355 hobo 8 1484 3.5 7.5 5.5 1.2 1516 chrX 10550839 intron spri - chrX 10551597 intron spri - chrX 10552355 intron spri - chrX_8_10550001 chrX_10550001 RAL-441 2397 chrX 10550872 10550889 chrX 10552320 10552337 hobo 4 1462 2.5 6.0 4.2 0.8 1465 chrX 10550872 intron spri - chrX 10551604 intron spri - chrX 10552337 intron spri - chrX_4_10550001 chrX_10550001 RAL-441 2398 chrX 10651620 10651646 chrX 10651755 10651782 7 136 2.0 4.5 3.2 1.7 162 chrX 10651620 intron X11Lbeta + chrX 10651701 intron X11Lbeta + chrX 10651782 intron X11Lbeta + chrX_7_10650001 chrX_10650001 RAL-441 2399 chrX 10686030 10686079 chrX 10691187 10691236 roo 15 5156 2.0 3.5 2.8 3.9 5206 chrX 10686030 intron X11Lbeta + chrX 10688633 intron X11Lbeta + chrX 10691236 intron X11Lbeta + chrX_15_10685001 chrX_10685001 RAL-441 2400 chrX 10719130 10719148 chrX 10719234 10719252 7 103 0.0 4.5 2.2 2.2 122 chrX 10719130 intron CG32676 - chrX 10719191 intron CG32676 - chrX 10719252 intron CG32676 - chrX_7_10715001 chrX_10715001 RAL-441 2401 chrX 10803014 10803046 chrX 10803118 10803151 6 104 6.0 6.5 6.2 0.8 137 chrX 10803014 intron Imp - chrX 10803082 intron Imp - chrX 10803151 intron Imp - chrX_6_10800001 chrX_10800001 RAL-441 2402 chrX 11069138 11069178 chrX 11069301 11069341 10 160 3.5 1.5 2.5 2.9 203 chrX 11069138 intergenic not near genes chrX 11069240 intergenic not near genes chrX 11069341 intergenic not near genes chrX_10_11065001 chrX_11065001 RAL-441 2403 chrX 11095979 11096027 chrX 11103098 11103133 HMS-Beagle 8 7119 1.5 0.5 1.0 4.0 7154 chrX 11095979 intergenic not near genes chrX 11099556 intergenic not near genes chrX 11103133 intron CG42249 + chrX_8_11095001 chrX_11095001 RAL-441 2404 chrX 11109417 11109417 chrX 12946233 12946235 6 1836817 6.5 10.0 8.2 0.7 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-441 2405 chrX 11142052 11142069 chrX 11142148 11142165 5 96 0.0 2.5 1.2 2.3 113 chrX 11142052 intergenic CG15199 -,CG15202 + chrX 11142108 intergenic CG15199 -,CG15202 + chrX 11142165 intergenic CG15199 -,CG15202 + chrX_5_11140001 chrX_11140001 RAL-441 2406 chrX 11184249 11184281 chrX 11189329 11189376 flea 7 5090 1.5 2.0 1.8 2.5 5127 chrX 11184249 intergenic not near genes chrX 11186812 intergenic not near genes chrX 11189376 intergenic not near genes chrX_7_11185001 chrX_11185001 RAL-441 2407 chrX 11215007 11215014 chrX 11215372 11215397 4 378 0.0 4.5 2.2 1.2 390 chrX 11215007 intergenic not near genes chrX 11215202 intergenic not near genes chrX 11215397 intergenic not near genes chrX_4_11215001 chrX_11215001 RAL-441 2408 chrX 11242430 11242472 chrX 11242527 11242561 11 97 1.5 4.5 3.0 2.8 131 chrX 11242430 intron CG44422 - chrX 11242496 intron CG44422 - chrX 11242561 intron CG44422 - chrX_11_11240001 chrX_11240001 RAL-441 2409 chrX 11262328 11262362 chrX 11262439 11262471 9 110 4.0 4.0 4.0 1.8 143 chrX 11262328 intron CG44422 - chrX 11262400 intron CG44422 - chrX 11262471 intron CG44422 - chrX_9_11260001 chrX_11260001 RAL-441 2410 chrX 11268575 11268583 chrX 11270063 11270074 hopper2 6 1492 1.5 5.0 3.2 1.4 1499 chrX 11268575 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270074 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-441 2411 chrX 11279139 11279149 chrX 11279244 11279254 4 104 4.5 4.0 4.2 0.8 115 chrX 11279139 intron CG44422 - chrX 11279196 intron CG44422 - chrX 11279254 intron CG44422 - chrX_4_11275001 chrX_11275001 RAL-441 2412 chrX 11279150 11279170 chrX 11279234 11279251 4 92 3.0 3.5 3.2 1.0 101 chrX 11279150 intron CG44422 - chrX 11279200 intron CG44422 - chrX 11279251 intron CG44422 - chrX_4_11275001 chrX_11275001 RAL-441 2413 chrX 11312040 11312085 chrX 11319413 11319458 Stalker2 8 7361 2.0 0.5 1.2 3.6 7418 chrX 11312040 intergenic not near genes chrX 11315749 intergenic not near genes chrX 11319458 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-441 2414 chrX 11379762 11379791 chrX 11379911 11379934 8 157 3.5 5.5 4.5 1.5 172 chrX 11379762 intron dlg1 + chrX 11379848 intron dlg1 + chrX 11379934 intron dlg1 + chrX_8_11375001 chrX_11375001 RAL-441 2415 chrX 11571442 11571475 chrX 11571698 11571728 pogo 7 255 6.5 2.0 4.2 1.3 286 chrX 11571442 3` UTR Kmn1 - chrX 11571585 3` UTR Kmn1 - chrX 11571728 3` UTR Kmn1 - chrX_7_11570001 chrX_11570001 RAL-441 2416 chrX 11633401 11633440 chrX 11640472 11640513 297 9 7073 4.0 2.0 3.0 2.2 7112 chrX 11633401 intron Ptp10D + chrX 11636957 intron Ptp10D + chrX 11640513 intron Ptp10D + chrX_9_11635001 chrX_11635001 RAL-441 2417 chrX 11645093 11645117 chrX 11648279 11648306 NOF 6 3188 2.5 1.0 1.8 2.1 3213 chrX 11645093 intron Ptp10D + chrX 11646700 intron Ptp10D + chrX 11648306 intron Ptp10D + chrX_6_11645001 chrX_11645001 RAL-441 2418 chrX 11719859 11719903 chrX 11719954 11719983 5 92 2.5 3.0 2.8 1.3 124 chrX 11719859 3` UTR prtp + chrX 11719921 intergenic prtp +,Tango10 + chrX 11719983 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-441 2419 chrX 11860582 11860618 chrX 11860679 11860715 7 96 1.5 5.0 3.2 1.7 133 chrX 11860582 intron ATP7 + chrX 11860648 intron ATP7 + chrX 11860715 intron ATP7 + chrX_7_11860001 chrX_11860001 RAL-441 2420 chrX 12176720 12176765 chrX 12176813 12176839 8 88 1.5 2.5 2.0 2.7 119 chrX 12176720 intron,3` UTR Ten-a +,CG1924 - chrX 12176780 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_8_12175001 chrX_12175001 RAL-441 2421 chrX 12202751 12202792 chrX 12202855 12202896 7 104 1.5 2.5 2.0 2.3 145 chrX 12202751 intron Ten-a + chrX 12202824 intron Ten-a + chrX 12202896 intron Ten-a + chrX_7_12200001 chrX_12200001 RAL-441 2422 chrX 12241174 12241215 chrX 12241276 12241317 9 100 2.5 2.0 2.2 2.8 143 chrX 12241174 intron Ten-a + chrX 12241246 intron Ten-a + chrX 12241317 intron Ten-a + chrX_9_12240001 chrX_12240001 RAL-441 2423 chrX 12307432 12307452 chrX 12307514 12307525 7 100 4.0 3.0 3.5 1.6 93 chrX 12307432 intron Ten-a + chrX 12307478 intron Ten-a + chrX 12307525 intron Ten-a + chrX_7_12305001 chrX_12305001 RAL-441 2424 chrX 12350772 12350801 chrX 12350852 12350883 8 95 4.0 0.0 2.0 2.7 111 chrX 12350772 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350883 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-441 2425 chrX 12381838 12381895 chrX 12385771 12385817 flea 4 3930 0.0 2.5 1.2 1.8 3979 chrX 12381838 intergenic not near genes chrX 12383828 intergenic not near genes chrX 12385817 intergenic not near genes chrX_4_12380001 chrX_12380001 RAL-441 2426 chrX 12808472 12808479 chrX 12808581 12808590 5 111 3.0 6.0 4.5 0.9 118 chrX 12808472 intron Pde9 - chrX 12808531 intron Pde9 - chrX 12808590 intron Pde9 - chrX_5_12805001 chrX_12805001 RAL-441 2427 chrX 13099103 13099139 chrX 13099216 13099252 4 113 0.0 1.0 0.5 2.7 149 chrX 13099103 intron CG43313 - chrX 13099178 intron CG43313 - chrX 13099252 intron CG43313 - chrX_4_13095001 chrX_13095001 RAL-441 2428 chrX 13278155 13278177 chrX 13278258 13278280 6 103 5.0 3.0 4.0 1.2 125 chrX 13278155 intron HDAC4 - chrX 13278218 intron HDAC4 - chrX 13278280 intron HDAC4 - chrX_6_13275001 chrX_13275001 RAL-441 2429 chrX 13401467 13401513 chrX 13401839 13401885 jockey 5 372 3.0 2.5 2.8 1.3 418 chrX 13401467 intergenic CG1673 +,CG12725 - chrX 13401676 intergenic CG12725 -,CG1673 + chrX 13401885 3` UTR CG12725 - chrX_5_13400001 chrX_13400001 RAL-441 2430 chrX 13442119 13442171 chrX 13442230 13442282 18 109 0.0 3.5 1.8 6.4 163 chrX 13442119 intergenic not near genes chrX 13442200 intergenic not near genes chrX 13442282 intergenic not near genes chrX_18_13440001 chrX_13440001 RAL-441 2431 chrX 13443393 13443416 chrX 13443487 13443497 4 86 3.0 5.0 4.0 0.8 104 chrX 13443393 intergenic not near genes chrX 13443445 intergenic not near genes chrX 13443497 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-441 2432 chrX 13463636 13463672 chrX 13469233 13469269 mdg3 8 5596 3.0 3.0 3.0 2.0 5633 chrX 13463636 intron Neto + chrX 13466452 intron Neto + chrX 13469269 intron Neto + chrX_8_13465001 chrX_13465001 RAL-441 2433 chrX 13593201 13593214 chrX 13593300 13593313 4 99 2.0 0.0 1.0 2.0 112 chrX 13593201 3` UTR Tango13 + chrX 13593257 intergenic Tango13 +,up - chrX 13593313 intergenic Tango13 +,up - chrX_4_13590001 chrX_13590001 RAL-441 2434 chrX 13632144 13632185 chrX 13632434 13632475 6 288 3.5 7.5 5.5 0.9 331 chrX 13632144 intron NFAT + chrX 13632310 intron NFAT + chrX 13632475 intron NFAT + chrX_6_13630001 chrX_13630001 RAL-441 2435 chrX 13700115 13700155 chrX 13700221 13700244 6 101 4.0 4.5 4.2 1.2 129 chrX 13700115 intron,intron CG9940 -,NnaD + chrX 13700180 intron,intron CG9940 -,NnaD + chrX 13700244 intron,intron CG9940 -,NnaD + chrX_6_13700001 chrX_13700001 RAL-441 2436 chrX 13754415 13754462 chrX 13754527 13754567 10 103 2.5 2.0 2.2 3.1 152 chrX 13754415 intron Pdcd4 - chrX 13754491 intron Pdcd4 - chrX 13754567 intron Pdcd4 - chrX_10_13750001 chrX_13750001 RAL-441 2437 chrX 13821453 13821469 chrX 13821550 13821563 4 94 6.0 4.5 5.2 0.6 110 chrX 13821453 intron Clic - chrX 13821508 intron Clic - chrX 13821563 intron Clic - chrX_4_13820001 chrX_13820001 RAL-441 2438 chrX 13934282 13934308 chrX 13934385 13934411 4 103 1.5 4.0 2.8 1.1 129 chrX 13934282 intron mamo - chrX 13934346 intron mamo - chrX 13934411 intron mamo - chrX_4_13930001 chrX_13930001 RAL-441 2439 chrX 13935495 13935527 chrX 13935598 13935630 7 103 3.0 9.0 6.0 1.0 135 chrX 13935495 intron mamo - chrX 13935562 intron mamo - chrX 13935630 intron mamo - chrX_7_13935001 chrX_13935001 RAL-441 2440 chrX 13057302 13057304 chrX 13966949 13966949 6 909646 8.0 3.5 5.8 0.9 909647 chrX 13057302 intron rad + chrX 13512126 intron Neto + chrX 13966949 intron mamo - chrX_6_13510001 chrX_13510001 RAL-441 2441 chrX 14157575 14157599 chrX 14163252 14163276 297 5 5677 3.5 1.5 2.5 1.4 5701 chrX 14157575 intergenic not near genes chrX 14160426 intergenic not near genes chrX 14163276 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-441 2442 chrX 14209453 14209477 chrX 14209563 14209588 5 111 3.5 3.0 3.2 1.2 135 chrX 14209453 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209588 intron,intron l(1)G0007 +,l(1)G0469 - chrX_5_14205001 chrX_14205001 RAL-441 2443 chrX 14331572 14331625 chrX 14331673 14331717 16 98 2.5 0.5 1.5 6.4 145 chrX 14331572 intron dpr8 + chrX 14331644 intron dpr8 + chrX 14331717 intron dpr8 + chrX_16_14330001 chrX_14330001 RAL-441 2444 chrX 14333269 14333317 chrX 14333371 14333383 5 84 1.0 0.5 0.8 2.8 114 chrX 14333269 intron dpr8 + chrX 14333326 intron dpr8 + chrX 14333383 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-441 2445 chrX 14401536 14401569 chrX 14401665 14401694 6 128 1.5 3.0 2.2 1.9 158 chrX 14401536 intron dpr8 + chrX 14401615 intron dpr8 + chrX 14401694 intron dpr8 + chrX_6_14400001 chrX_14400001 RAL-441 2446 chrX 14413803 14413856 chrX 14413917 14413968 13 111 2.0 3.5 2.8 3.4 165 chrX 14413803 intron dpr8 + chrX 14413886 intron dpr8 + chrX 14413968 intron dpr8 + chrX_13_14410001 chrX_14410001 RAL-441 2447 chrX 14572890 14572907 chrX 14572971 14573015 10 87 4.0 3.5 3.8 2.1 125 chrX 14572890 intergenic not near genes chrX 14572952 intergenic not near genes chrX 14573015 intergenic not near genes chrX_10_14570001 chrX_14570001 RAL-441 2448 chrX 14589686 14589705 chrX 14589938 14589961 pogo 10 256 3.0 8.0 5.5 1.5 275 chrX 14589686 intron CG9413 - chrX 14589824 intron CG9413 - chrX 14589961 intron CG9413 - chrX_10_14585001 chrX_14585001 RAL-441 2449 chrX 14636446 14636491 chrX 14641907 14641951 I-element 14 5461 5.0 5.0 5.0 2.3 5505 chrX 14636446 intron NetA - chrX 14639198 intron NetA - chrX 14641951 intron NetA - chrX_14_14635001 chrX_14635001 RAL-441 2450 chrX 14714025 14714063 chrX 14714127 14714148 10 97 1.5 3.0 2.2 3.1 123 chrX 14714025 intron NetB - chrX 14714086 intron NetB - chrX 14714148 intron NetB - chrX_10_14710001 chrX_14710001 RAL-441 2451 chrX 14778016 14778048 chrX 14782833 14782865 Doc 5 4816 3.0 3.0 3.0 1.2 4849 chrX 14778016 intergenic CG5347 + chrX 14780440 intergenic not near genes chrX 14782865 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-441 2452 chrX 14813722 14813754 chrX 14813820 14813851 8 96 5.0 1.5 3.2 1.9 129 chrX 14813722 intron rut - chrX 14813786 intron rut - chrX 14813851 intron rut - chrX_8_14810001 chrX_14810001 RAL-441 2453 chrX 14818779 14818796 chrX 14823987 14823992 copia 5 5211 1.0 5.5 3.2 1.2 5213 chrX 14818779 intron rut - chrX 14821386 intron rut - chrX 14823992 intron rut - chrX_5_14820001 chrX_14820001 RAL-441 2454 chrX 14825368 14825378 chrX 14825435 14825453 6 79 8.5 3.5 6.0 0.9 85 chrX 14825368 intron rut - chrX 14825410 intron rut - chrX 14825453 intron rut - chrX_6_14825001 chrX_14825001 RAL-441 2455 chrX 14881750 14881755 chrX 14881832 14881865 4 103 1.0 0.0 0.5 2.7 115 chrX 14881750 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881808 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881865 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX_4_14880001 chrX_14880001 RAL-441 2456 chrX 14890450 14890491 chrX 14890545 14890585 7 90 1.0 0.0 0.5 4.7 135 chrX 14890450 intron,intron Flo2 +,CG9514 - chrX 14890518 intron,intron Flo2 +,CG9514 - chrX 14890585 intron,intron Flo2 +,CG9514 - chrX_7_14890001 chrX_14890001 RAL-441 2457 chrX 14936842 14936888 chrX 14946117 14946164 roo 8 9274 3.0 1.0 2.0 2.7 9322 chrX 14936842 intron pdgy - chrX 14941503 intron pdgy - chrX 14946164 intron pdgy - chrX_8_14940001 chrX_14940001 RAL-441 2458 chrX 15234356 15234387 chrX 15234458 15234490 8 100 1.5 4.0 2.8 2.1 134 chrX 15234356 intergenic not near genes chrX 15234423 intergenic not near genes chrX 15234490 intergenic not near genes chrX_8_15230001 chrX_15230001 RAL-441 2459 chrX 15273717 15273738 chrX 15274869 15274881 1360 7 1154 3.0 5.0 4.0 1.4 1164 chrX 15273717 intergenic not near genes chrX 15274299 intergenic not near genes chrX 15274881 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-441 2460 chrX 15369809 15369856 chrX 15369912 15369958 7 103 3.5 4.5 4.0 1.4 149 chrX 15369809 intron acj6 - chrX 15369884 intron acj6 - chrX 15369958 intron acj6 - chrX_7_15365001 chrX_15365001 RAL-441 2461 chrX 15519780 15519825 chrX 15519878 15519890 7 92 2.0 2.5 2.2 2.2 110 chrX 15519780 intron Ac13E - chrX 15519835 intron Ac13E - chrX 15519890 intron Ac13E - chrX_7_15515001 chrX_15515001 RAL-441 2462 chrX 15565624 15565649 chrX 15565730 15565755 4 105 4.5 2.5 3.5 0.9 131 chrX 15565624 intergenic not near genes chrX 15565690 intergenic not near genes chrX 15565755 intergenic not near genes chrX_4_15565001 chrX_15565001 RAL-441 2463 chrX 15666195 15666229 chrX 15666292 15666304 5 92 2.0 3.0 2.5 1.4 109 chrX 15666195 intergenic CR43299 - chrX 15666250 intergenic not near genes chrX 15666304 intergenic not near genes chrX_5_15665001 chrX_15665001 RAL-441 2464 chrX 16074126 16074163 chrX 16074482 16074519 7 356 0.0 1.0 0.5 4.7 393 chrX 16074126 intergenic not near genes chrX 16074322 intergenic Tob - chrX 16074519 intergenic Tob - chrX_7_16070001 chrX_16070001 RAL-441 2465 chrX 16209391 16209398 chrX 16209497 16209505 4 106 6.5 0.0 3.2 1.0 114 chrX 16209391 intergenic not near genes chrX 16209448 intergenic not near genes chrX 16209505 intergenic not near genes chrX_4_16205001 chrX_16205001 RAL-441 2466 chrX 16222769 16222810 chrX 16231139 16231157 roo 4 8364 1.0 3.5 2.2 1.2 8388 chrX 16222769 intergenic not near genes chrX 16226963 intergenic not near genes chrX 16231157 intergenic not near genes chrX_4_16225001 chrX_16225001 RAL-441 2467 chrX 16295507 16295531 chrX 16295610 16295626 4 102 3.0 0.0 1.5 1.6 119 chrX 16295507 intron CG9911 - chrX 16295566 intron CG9911 - chrX 16295626 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-441 2468 chrX 16438537 16438571 chrX 16440492 16440528 5 1955 15.5 20.5 18.0 0.3 1991 chrX 16438537 3` UTR CG9947 - chrX 16439532 intron CG9947 - chrX 16440528 intron CG9947 - chrX_5_16435001 chrX_16435001 RAL-441 2469 chrX 16570858 16570888 chrX 16570958 16570988 7 100 6.5 2.0 4.2 1.3 130 chrX 16570858 intron CanA-14F - chrX 16570923 intron CanA-14F - chrX 16570988 intron CanA-14F - chrX_7_16570001 chrX_16570001 RAL-441 2470 chrX 16668756 16668803 chrX 16668850 16668871 6 90 2.5 3.0 2.8 1.6 115 chrX 16668756 intergenic r +,CG13012 - chrX 16668814 intergenic CG13012 -,r + chrX 16668871 3` UTR CG13012 - chrX_6_16665001 chrX_16665001 RAL-441 2471 chrX 16681617 16681663 chrX 16681713 16681759 9 96 2.5 4.0 3.2 2.1 142 chrX 16681617 3` UTR,intron sing +,Axs - chrX 16681688 3` UTR,intron sing +,Axs - chrX 16681759 3` UTR,intron sing +,Axs - chrX_9_16680001 chrX_16680001 RAL-441 2472 chrX 16785260 16785293 chrX 16785384 16785417 5 122 3.0 4.5 3.8 1.0 157 chrX 16785260 3` UTR CG9609 - chrX 16785338 3` UTR CG9609 - chrX 16785417 3` UTR CG9609 - chrX_5_16785001 chrX_16785001 RAL-441 2473 chrX 16833194 16833224 chrX 16833291 16833329 7 102 3.0 1.0 2.0 2.3 135 chrX 16833194 intron CG13004 - chrX 16833262 intron CG13004 - chrX 16833329 intron CG13004 - chrX_7_16830001 chrX_16830001 RAL-441 2474 chrX 1053117 1053123 chrX 16983076 16983076 4 15929955 5.5 13.0 9.2 0.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-441 2475 chrX 1053118 1053120 chrX 16983077 16983077 4 15929958 5.5 13.0 9.2 0.4 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-441 2476 chrX 17011980 17011999 chrX 17012051 17012092 4 91 1.0 3.0 2.0 1.3 112 chrX 17011980 intron CG45002 - chrX 17012036 intron CG45002 - chrX 17012092 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-441 2477 chrX 17054154 17054201 chrX 17054377 17054428 11 225 2.5 2.0 2.2 3.4 274 chrX 17054154 intron CG45002 - chrX 17054291 intron CG45002 - chrX 17054428 intron CG45002 - chrX_11_17050001 chrX_17050001 RAL-441 2478 chrX 17089585 17089627 chrX 17089725 17089773 10 142 2.0 2.0 2.0 3.3 188 chrX 17089585 intergenic not near genes chrX 17089679 intergenic not near genes chrX 17089773 intergenic not near genes chrX_10_17085001 chrX_17085001 RAL-441 2479 chrX 17211436 17211474 chrX 17212135 17212166 20 689 19.0 23.5 21.2 0.9 730 chrX 17211436 intergenic not near genes chrX 17211801 intergenic not near genes chrX 17212166 intergenic CG18258 + chrX_20_17210001 chrX_17210001 RAL-441 2480 chrX 17229939 17229966 chrX 17230061 17230089 11 121 6.0 3.0 4.5 2.0 150 chrX 17229939 intergenic CG10597 - chrX 17230014 intergenic CG10597 - chrX 17230089 intergenic CG10597 - chrX_11_17230001 chrX_17230001 RAL-441 2481 chrX 17290063 17290096 chrX 17290159 17290192 6 96 0.0 1.0 0.5 4.0 129 chrX 17290063 intron,intron CG5445 +,Fim - chrX 17290128 intron,intron CG5445 +,Fim - chrX 17290192 intron,intron CG5445 +,Fim - chrX_6_17290001 chrX_17290001 RAL-441 2482 chrX 17352604 17352617 chrX 17352709 17352736 5 119 0.5 2.5 1.5 2.0 132 chrX 17352604 intergenic not near genes chrX 17352670 intergenic not near genes chrX 17352736 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-441 2483 chrX 17434412 17434446 chrX 17434525 17434559 5 113 1.5 0.0 0.8 2.8 147 chrX 17434412 intron CG12994 - chrX 17434486 intron CG12994 - chrX 17434559 intron CG12994 - chrX_5_17430001 chrX_17430001 RAL-441 2484 chrX 17520772 17520811 chrX 17520865 17520907 4 96 2.0 3.5 2.8 1.1 135 chrX 17520772 intron CG43658 - chrX 17520840 intron CG43658 - chrX 17520907 intron CG43658 - chrX_4_17520001 chrX_17520001 RAL-441 2485 chrX 17544989 17545034 chrX 17545091 17545136 12 101 2.5 3.0 2.8 3.2 147 chrX 17544989 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545136 intron CG43658 - chrX_12_17545001 chrX_17545001 RAL-441 2486 chrX 17771283 17771324 chrX 17771374 17771394 7 88 2.0 3.0 2.5 2.0 111 chrX 17771283 intron unc-4 + chrX 17771338 intron unc-4 + chrX 17771394 intron unc-4 + chrX_7_17770001 chrX_17770001 RAL-441 2487 chrX 17790632 17790650 chrX 17790735 17790739 4 94 5.5 0.5 3.0 1.0 107 chrX 17790632 intergenic OdsH + chrX 17790686 intergenic OdsH + chrX 17790739 intergenic OdsH + chrX_4_17790001 chrX_17790001 RAL-441 2488 chrX 17981499 17981519 chrX 17981775 17981799 7 290 2.0 6.0 4.0 1.4 300 chrX 17981499 intron Sh - chrX 17981649 intron Sh - chrX 17981799 intron Sh - chrX_7_17980001 chrX_17980001 RAL-441 2489 chrX 18122801 18122843 chrX 18122895 18122939 7 95 2.5 1.5 2.0 2.3 138 chrX 18122801 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122939 intergenic CR45606 + chrX_7_18120001 chrX_18120001 RAL-441 2490 chrX 18194059 18194098 chrX 18194613 18194649 BS 9 553 1.5 3.5 2.5 2.6 590 chrX 18194059 intron Frq2 + chrX 18194354 intron Frq2 + chrX 18194649 intron Frq2 + chrX_9_18190001 chrX_18190001 RAL-441 2491 chrX 18341618 18341657 chrX 18342008 18342051 6 394 4.0 3.0 3.5 1.3 433 chrX 18341618 intron CG6123 - chrX 18341834 intron CG6123 - chrX 18342051 intron CG6123 - chrX_6_18340001 chrX_18340001 RAL-441 2492 chrX 18349992 18350020 chrX 18350097 18350119 6 104 4.5 3.5 4.0 1.2 127 chrX 18349992 intron CG6123 - chrX 18350056 intron CG6123 - chrX 18350119 intron CG6123 - chrX_6_18350001 chrX_18350001 RAL-441 2493 chrX 18453492 18453510 chrX 18453569 18453621 4 98 1.0 1.0 1.0 2.0 129 chrX 18453492 intron CG32547 - chrX 18453556 intron CG32547 - chrX 18453621 intron CG32547 - chrX_4_18450001 chrX_18450001 RAL-441 2494 chrX 18474306 18474342 chrX 18474402 18474428 7 94 3.5 1.5 2.5 2.0 122 chrX 18474306 intron CG32547 - chrX 18474367 intron CG32547 - chrX 18474428 intron CG32547 - chrX_7_18470001 chrX_18470001 RAL-441 2495 chrX 18490025 18490212 chrX 18490200 18490299 5 139 0.5 0.5 0.5 3.3 274 chrX 18490025 intergenic CG15046 - chrX 18490162 intergenic not near genes chrX 18490299 intergenic not near genes chrX_5_18490001 chrX_18490001 RAL-441 2496 chrX 18543094 18543117 chrX 18543197 18543220 6 102 3.5 2.0 2.8 1.6 126 chrX 18543094 intron Bx + chrX 18543157 intron Bx + chrX 18543220 intron Bx + chrX_6_18540001 chrX_18540001 RAL-441 2497 chrX 18558770 18558807 chrX 18558872 18558908 9 98 0.5 7.0 3.8 1.9 138 chrX 18558770 intron Bx + chrX 18558839 intron Bx + chrX 18558908 intron Bx + chrX_9_18555001 chrX_18555001 RAL-441 2498 chrX 18644998 18645045 chrX 18645115 18645163 10 117 2.0 8.0 5.0 1.7 165 chrX 18644998 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645163 intron Rip11 - chrX_10_18645001 chrX_18645001 RAL-441 2499 chrX 18698828 18698875 chrX 18698964 18699012 11 132 1.5 1.0 1.2 5.0 184 chrX 18698828 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18699012 intergenic not near genes chrX_11_18695001 chrX_18695001 RAL-441 2500 chrX 18749849 18749902 chrX 18749953 18749986 9 100 2.0 2.5 2.2 2.8 137 chrX 18749849 intergenic not near genes chrX 18749918 intergenic not near genes chrX 18749986 intergenic not near genes chrX_9_18745001 chrX_18745001 RAL-441 2501 chrX 18870467 18870484 chrX 18870770 18870786 8 302 9.0 1.0 5.0 1.3 319 chrX 18870467 intron CG34401 + chrX 18870626 intron CG34401 + chrX 18870786 intron CG34401 + chrX_8_18870001 chrX_18870001 RAL-441 2502 chrX 18870492 18870504 chrX 18870761 18870803 6 294 5.5 0.5 3.0 1.5 311 chrX 18870492 intron CG34401 + chrX 18870648 intron CG34401 + chrX 18870803 intron CG34401 + chrX_6_18870001 chrX_18870001 RAL-441 2503 chrX 18898509 18898529 chrX 18898639 18898651 6 126 5.0 5.5 5.2 1.0 142 chrX 18898509 intergenic not near genes chrX 18898580 intergenic not near genes chrX 18898651 intergenic not near genes chrX_6_18895001 chrX_18895001 RAL-441 2504 chrX 18898533 18898553 chrX 18898637 18898683 7 126 4.0 5.5 4.8 1.2 150 chrX 18898533 intergenic not near genes chrX 18898608 intergenic not near genes chrX 18898683 intergenic not near genes chrX_7_18895001 chrX_18895001 RAL-441 2505 chrX 18957061 18957101 chrX 18965741 18965784 roo 6 8674 1.5 2.0 1.8 2.1 8723 chrX 18957061 intron CG43759 + chrX 18961422 intron CG43759 + chrX 18965784 intron CG43759 + chrX_6_18960001 chrX_18960001 RAL-441 2506 chrX 19060395 19060435 chrX 19065198 19065239 Doc 11 4804 3.5 3.0 3.2 2.6 4844 chrX 19060395 intron CG14190 + chrX 19062817 intron CG14190 + chrX 19065239 intron CG14190 + chrX_11_19060001 chrX_19060001 RAL-441 2507 chrX 19084073 19084123 chrX 19084213 19084263 11 136 1.0 1.5 1.2 5.0 190 chrX 19084073 intergenic CR45503 + chrX 19084168 intergenic CR45503 + chrX 19084263 intergenic CR45503 + chrX_11_19080001 chrX_19080001 RAL-441 2508 chrX 19106007 19106040 chrX 19106244 19106277 12 236 2.0 3.0 2.5 3.4 270 chrX 19106007 intergenic not near genes chrX 19106142 intergenic not near genes chrX 19106277 intergenic not near genes chrX_12_19105001 chrX_19105001 RAL-441 2509 chrX 19124421 19124463 chrX 19124525 19124538 8 103 2.0 3.0 2.5 2.3 117 chrX 19124421 intergenic CG15882 - chrX 19124480 intergenic CG15882 - chrX 19124538 intergenic CG15882 -,tgy - chrX_8_19120001 chrX_19120001 RAL-441 2510 chrX 19125676 19125721 chrX 19125824 19125869 8 140 5.5 3.5 4.5 1.5 193 chrX 19125676 intron tgy - chrX 19125772 intron tgy - chrX 19125869 intron tgy - chrX_8_19125001 chrX_19125001 RAL-441 2511 chrX 19131966 19132001 chrX 19132052 19132089 10 92 3.0 2.0 2.5 2.9 123 chrX 19131966 intergenic not near genes chrX 19132028 intergenic not near genes chrX 19132089 intergenic not near genes chrX_10_19130001 chrX_19130001 RAL-441 2512 chrX 19136542 19136563 chrX 19143482 19143495 412 4 6936 2.5 1.5 2.0 1.3 6953 chrX 19136542 intergenic not near genes chrX 19140018 intergenic not near genes chrX 19143495 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-441 2513 chrX 19162241 19162283 chrX 19162631 19162678 11 394 2.5 2.0 2.2 3.4 437 chrX 19162241 intron RhoGAP18B - chrX 19162460 intron RhoGAP18B - chrX 19162678 intron RhoGAP18B - chrX_11_19160001 chrX_19160001 RAL-441 2514 chrX 19176199 19176207 chrX 19176297 19176310 5 100 5.5 3.0 4.2 1.0 111 chrX 19176199 3` UTR CG7556 - chrX 19176254 3` UTR CG7556 - chrX 19176310 3` UTR CG7556 - chrX_5_19175001 chrX_19175001 RAL-441 2515 chrX 19176208 19176236 chrX 19176293 19176340 6 98 2.0 2.5 2.2 1.9 132 chrX 19176208 3` UTR CG7556 - chrX 19176274 3` UTR CG7556 - chrX 19176340 3` UTR CG7556 - chrX_6_19175001 chrX_19175001 RAL-441 2516 chrX 19182011 19182036 chrX 19182143 19182151 6 126 1.0 1.5 1.2 2.7 140 chrX 19182011 3` UTR CG7453 + chrX 19182081 intergenic CG7453 + chrX 19182151 intergenic CG7453 + chrX_6_19180001 chrX_19180001 RAL-441 2517 chrX 19187498 19187543 chrX 19187595 19187614 12 88 1.5 0.5 1.0 6.0 116 chrX 19187498 intergenic CG33253 + chrX 19187556 intergenic CG33253 +,Mec2 + chrX 19187614 intergenic CG33253 +,Mec2 + chrX_12_19185001 chrX_19185001 RAL-441 2518 chrX 19462317 19462335 chrX 19462403 19462423 6 100 3.5 1.5 2.5 1.7 106 chrX 19462317 intron kek5 + chrX 19462370 intron kek5 + chrX 19462423 intron kek5 + chrX_6_19460001 chrX_19460001 RAL-441 2519 chrX 19472122 19472155 chrX 19472694 19472716 jockey 5 573 2.0 3.0 2.5 1.4 594 chrX 19472122 intergenic kek5 + chrX 19472419 intergenic not near genes chrX 19472716 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-441 2520 chrX 19560658 19560690 chrX 19560777 19560809 5 119 1.0 4.5 2.8 1.3 151 chrX 19560658 3` UTR Grip84 - chrX 19560734 3` UTR Grip84 - chrX 19560809 3` UTR Grip84 - chrX_5_19560001 chrX_19560001 RAL-441 2521 chrX 19593939 19593971 chrX 19594044 19594060 7 101 5.0 2.5 3.8 1.5 121 chrX 19593939 exon CG14205 + chrX 19594000 intron CG14205 + chrX 19594060 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-441 2522 chrX 19595715 19595735 chrX 19595824 19595840 5 107 1.0 4.0 2.5 1.4 125 chrX 19595715 intergenic CG14205 + chrX 19595778 intergenic CG14205 + chrX 19595840 intergenic CG14205 + chrX_5_19595001 chrX_19595001 RAL-441 2523 chrX 19710070 19710100 chrX 19711874 19711904 S-element 12 1803 3.0 6.5 4.8 2.1 1834 chrX 19710070 intron meso18E - chrX 19710987 intron meso18E - chrX 19711904 intron meso18E - chrX_12_19710001 chrX_19710001 RAL-441 2524 chrX 19819419 19819441 chrX 19819522 19819541 5 101 4.0 2.0 3.0 1.2 122 chrX 19819419 intergenic not near genes chrX 19819480 intergenic not near genes chrX 19819541 intergenic not near genes chrX_5_19815001 chrX_19815001 RAL-441 2525 chrX 19820013 19820033 chrX 19820117 19820138 9 104 5.0 0.0 2.5 2.6 125 chrX 19820013 intergenic not near genes chrX 19820076 intergenic not near genes chrX 19820138 intergenic not near genes chrX_9_19820001 chrX_19820001 RAL-441 2526 chrX 19822811 19822859 chrX 19822998 19823046 10 177 3.5 2.0 2.8 2.6 235 chrX 19822811 intergenic not near genes chrX 19822928 intergenic skpE - chrX 19823046 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-441 2527 chrX 19880382 19880394 chrX 19880521 19880531 4 138 2.5 1.5 2.0 1.3 149 chrX 19880382 intron Hers + chrX 19880456 intron Hers + chrX 19880531 intron Hers + chrX_4_19880001 chrX_19880001 RAL-441 2528 chrX 19881450 19881479 chrX 19881548 19881573 5 97 3.0 2.0 2.5 1.4 123 chrX 19881450 intron Hers + chrX 19881512 intron Hers + chrX 19881573 intron Hers + chrX_5_19880001 chrX_19880001 RAL-441 2529 chrX 19884103 19884122 chrX 19884162 19884181 4 60 1.5 1.5 1.5 1.6 78 chrX 19884103 intron Hers + chrX 19884142 intron Hers + chrX 19884181 intron Hers + chrX_4_19880001 chrX_19880001 RAL-441 2530 chrX 19971811 19971824 chrX 19971908 19971919 4 96 4.5 6.0 5.2 0.6 108 chrX 19971811 intergenic not near genes chrX 19971865 intergenic not near genes chrX 19971919 intergenic not near genes chrX_4_19970001 chrX_19970001 RAL-441 2531 chrX 19983410 19983535 chrX 19983515 19983712 9 146 0.0 0.0 0.0 9.0 302 chrX 19983410 intergenic not near genes chrX 19983561 intergenic not near genes chrX 19983712 intergenic not near genes chrX_9_19980001 chrX_19980001 RAL-441 2532 chrX 20257088 20257092 chrX 20257426 20257446 4 347 18.5 21.0 19.8 0.2 358 chrX 20257088 5` UTR CG17065 - chrX 20257267 intergenic CG17065 - chrX 20257446 intergenic CG17065 - chrX_4_20255001 chrX_20255001 RAL-441 2533 chrX 20257750 20257769 chrX 20257843 20257871 8 102 3.0 1.5 2.2 2.5 121 chrX 20257750 intergenic not near genes chrX 20257810 intergenic not near genes chrX 20257871 intergenic not near genes chrX_8_20255001 chrX_20255001 RAL-441 2534 chrX 20262862 20262917 chrX 20262992 20263016 18 124 1.0 5.0 3.0 4.5 154 chrX 20262862 intergenic not near genes chrX 20262939 intergenic not near genes chrX 20263016 intergenic not near genes chrX_18_20260001 chrX_20260001 RAL-441 2535 chrX 20312865 20312906 chrX 20312958 20313004 5 97 3.0 3.5 3.2 1.2 139 chrX 20312865 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20313004 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-441 2536 chrX 20359124 20359132 chrX 20359222 20359226 4 96 10.5 4.5 7.5 0.5 102 chrX 20359124 intergenic not near genes chrX 20359175 intergenic not near genes chrX 20359226 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-441 2537 chrX 20359136 20359162 chrX 20359215 20359260 7 88 4.5 4.5 4.5 1.3 124 chrX 20359136 intergenic not near genes chrX 20359198 intergenic not near genes chrX 20359260 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-441 2538 chrX 20374080 20374124 chrX 20374174 20374220 4 90 1.0 2.0 1.5 1.6 140 chrX 20374080 intergenic not near genes chrX 20374150 intergenic not near genes chrX 20374220 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-441 2539 chrX 20377325 20377347 chrX 20378798 20378804 hobo 7 1479 5.0 3.5 4.2 1.3 1479 chrX 20377325 intergenic not near genes chrX 20378064 intergenic not near genes chrX 20378804 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-441 2540 chrX 20468002 20468025 chrX 20468109 20468133 4 108 2.5 0.5 1.5 1.6 131 chrX 20468002 intron GstT3 + chrX 20468068 intron GstT3 + chrX 20468133 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-441 2541 chrX 20570746 20570792 chrX 20570850 20570897 11 104 4.5 4.0 4.2 2.1 151 chrX 20570746 intergenic not near genes chrX 20570822 intergenic not near genes chrX 20570897 intergenic not near genes chrX_11_20570001 chrX_20570001 RAL-441 2542 chrX 20625254 20625297 chrX 20625349 20625389 7 94 1.5 1.5 1.5 2.8 135 chrX 20625254 intergenic not near genes chrX 20625322 intergenic not near genes chrX 20625389 intergenic not near genes chrX_7_20625001 chrX_20625001 RAL-441 2543 chrX 20645333 20645343 chrX 20645549 20645555 5 215 2.0 2.0 2.0 1.7 222 chrX 20645333 intergenic not near genes chrX 20645444 intergenic not near genes chrX 20645555 intergenic not near genes chrX_5_20645001 chrX_20645001 RAL-441 2544 chrX 20800924 20800954 chrX 20801028 20801049 5 103 0.5 1.0 0.8 2.8 125 chrX 20800924 intron shakB - chrX 20800986 intron shakB - chrX 20801049 intron shakB - chrX_5_20800001 chrX_20800001 RAL-441 2545 chrX 20836708 20836757 chrX 20844329 20844378 roo 13 7621 2.0 2.5 2.2 4.1 7670 chrX 20836708 intron shakB - chrX 20840543 intron shakB - chrX 20844378 intron shakB - chrX_13_20840001 chrX_20840001 RAL-441 2546 chrX 20940718 20940743 chrX 20942207 20942230 hobo 8 1487 3.5 0.5 2.0 2.7 1512 chrX 20940718 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942230 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-441 2547 chrX 21032262 21032271 chrX 21035253 21035255 Rt1b 7 2989 0.5 15.0 7.8 0.8 2993 chrX 21032262 intergenic CG1529 - chrX 21033758 intergenic not near genes chrX 21035255 intergenic Ntf-2 + chrX_7_21030001 chrX_21030001 RAL-441 2548 chrX 21058357 21058370 chrX 21058477 21058488 5 119 3.0 3.0 3.0 1.2 131 chrX 21058357 intron bves + chrX 21058422 intron bves + chrX 21058488 intron bves + chrX_5_21055001 chrX_21055001 RAL-441 2549 chrX 21061868 21061896 chrX 21062363 21062401 roo 6 501 1.0 3.5 2.2 1.9 533 chrX 21061868 intron bves + chrX 21062134 intron bves + chrX 21062401 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-441 2550 chrX 21076317 21076355 chrX 21076414 21076454 11 94 1.0 0.0 0.5 7.3 137 chrX 21076317 intron bves + chrX 21076386 intron bves + chrX 21076454 intron bves + chrX_11_21075001 chrX_21075001 RAL-441 2551 chrX 21086137 21086160 chrX 21087163 21087177 jockey 4 1035 5.5 5.0 5.2 0.6 1040 chrX 21086137 intergenic not near genes chrX 21086657 intergenic not near genes chrX 21087177 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-441 2552 chrX 21166130 21166165 chrX 21166228 21166266 4 99 1.0 0.5 0.8 2.2 136 chrX 21166130 intergenic not near genes chrX 21166198 intergenic not near genes chrX 21166266 intergenic not near genes chrX_4_21165001 chrX_21165001 RAL-441 2553 chrX 21253267 21253296 chrX 21253364 21253369 7 93 4.0 5.0 4.5 1.3 102 chrX 21253267 intron CG32521 - chrX 21253318 intron CG32521 - chrX 21253369 intron CG32521 - chrX_7_21250001 chrX_21250001 RAL-441 2554 chrX 21275148 21275179 chrX 21275246 21275252 6 94 0.5 2.5 1.5 2.4 104 chrX 21275148 intron CG32521 - chrX 21275200 intron CG32521 - chrX 21275252 intron CG32521 - chrX_6_21275001 chrX_21275001 RAL-441 2555 chrX 21308878 21308909 chrX 21308980 21309031 5 111 5.0 0.0 2.5 1.4 153 chrX 21308878 exon CG1801 - chrX 21308954 intron CG1801 - chrX 21309031 intron CG1801 - chrX_5_21305001 chrX_21305001 RAL-441 2556 chrX 21311650 21311676 chrX 21311771 21311797 7 118 2.5 0.5 1.5 2.8 147 chrX 21311650 intron CG1801 - chrX 21311724 intron CG1801 - chrX 21311797 intron CG1801 - chrX_7_21310001 chrX_21310001 RAL-441 2557 chrX 21328116 21328143 chrX 21328247 21328274 5 131 1.5 0.5 1.0 2.5 158 chrX 21328116 3` UTR CG1486 + chrX 21328195 intergenic CG1486 +,tty - chrX 21328274 intergenic CG1486 +,tty - chrX_5_21325001 chrX_21325001 RAL-441 2558 chrX 21358058 21358091 chrX 21358158 21358191 11 99 3.0 4.0 3.5 2.4 133 chrX 21358058 intergenic sol +,Sep1 + chrX 21358124 intergenic Sep1 +,sol + chrX 21358191 intergenic Sep1 +,sol + chrX_11_21355001 chrX_21355001 RAL-441 2559 chrX 21428316 21428369 chrX 21428526 21428579 10 206 2.0 2.0 2.0 3.3 263 chrX 21428316 intron CG42343 - chrX 21428448 intron CG42343 - chrX 21428579 intron CG42343 - chrX_10_21425001 chrX_21425001 RAL-441 2560 chrX 21455193 21455241 chrX 21455392 21455448 4 202 0.5 0.0 0.2 3.3 255 chrX 21455193 intron CG42343 - chrX 21455320 intron CG42343 - chrX 21455448 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-441 2561 chrX 21458696 21458727 chrX 21464149 21464161 Ivk 11 5453 0.0 0.5 0.2 9.2 5465 chrX 21458696 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464161 intergenic not near genes chrX_11_21460001 chrX_21460001 RAL-441 2562 chrX 21466994 21467041 chrX 21467097 21467145 7 103 2.5 0.5 1.5 2.8 151 chrX 21466994 intergenic CR45507 - chrX 21467070 intergenic CR45507 - chrX 21467145 3` UTR CR45507 - chrX_7_21465001 chrX_21465001 RAL-441 2563 chrX 21474401 21474435 chrX 21474787 21474818 1731 7 385 7.5 5.0 6.2 1.0 417 chrX 21474401 intergenic not near genes chrX 21474610 intergenic not near genes chrX 21474818 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-441 2564 chrX 21500553 21500568 chrX 21500771 21500783 5 218 1.0 2.5 1.8 1.8 230 chrX 21500553 intron CR45082 - chrX 21500668 intron CR45082 - chrX 21500783 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-441 2565 chrX 21516973 21517009 chrX 21517072 21517072 6 90 9.5 2.5 6.0 0.9 99 chrX 21516973 intron CR45082 - chrX 21517022 intron CR45082 - chrX 21517072 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-441 2566 chrX 21565401 21565439 chrX 21565491 21565537 10 94 3.0 3.0 3.0 2.5 136 chrX 21565401 intergenic not near genes chrX 21565469 intergenic not near genes chrX 21565537 intergenic not near genes chrX_10_21565001 chrX_21565001 RAL-441 2567 chrX 21581540 21581559 chrX 21581641 21581654 4 100 1.0 0.0 0.5 2.7 114 chrX 21581540 intergenic not near genes chrX 21581597 intergenic not near genes chrX 21581654 intergenic not near genes chrX_4_21580001 chrX_21580001 RAL-441 2568 chrX 22448264 22448290 chrX 22448423 22448449 8 158 1.0 7.5 4.2 1.5 185 chrX 22448264 intron CG14615 - chrX 22448356 intron CG14615 - chrX 22448449 intron CG14615 - chrX_8_22445001 chrX_22445001 RAL-441 2569 chrX 22564562 22564584 chrX 22575114 22575142 jockey 6 10554 17.0 3.0 10.0 0.5 10580 chrX 22564562 intergenic not near genes chrX 22569852 intergenic not near genes chrX 22575142 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-441 2570 chrX 22585523 22585538 chrX 22585597 22585642 6 99 2.5 2.5 2.5 1.7 119 chrX 22585523 intron Cda4 - chrX 22585582 intron Cda4 - chrX 22585642 intron Cda4 - chrX_6_22585001 chrX_22585001 RAL-441 2571 chrX 22697479 22697515 chrX 22701796 22701832 Juan 7 4317 4.5 6.5 5.5 1.1 4353 chrX 22697479 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701832 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-441 2572 chrX 22733789 22733836 chrX 22733966 22734000 7 172 4.0 2.0 3.0 1.8 211 chrX 22733789 intron CR44997 + chrX 22733894 intron CR44997 + chrX 22734000 intron CR44997 + chrX_7_22730001 chrX_22730001 RAL-441 2573 chrX 22771490 22771537 chrX 22774799 22774828 297 7 3300 4.0 6.5 5.2 1.1 3338 chrX 22771490 intron CR44997 + chrX 22773159 intron CR44997 + chrX 22774828 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-441 2574 chrX 22824400 22824415 chrX 22824553 22824568 5 151 0.5 3.0 1.8 1.8 168 chrX 22824400 3` UTR fog - chrX 22824484 3` UTR fog - chrX 22824568 3` UTR fog - chrX_5_22820001 chrX_22820001 RAL-441 2575 chrX 22867966 22868008 chrX 22868099 22868116 6 126 1.0 0.0 0.5 4.0 150 chrX 22867966 exon CG42346 + chrX 22868041 intron CG42346 + chrX 22868116 intron CG42346 + chrX_6_22865001 chrX_22865001 RAL-441 2576 chrX 22895712 22895759 chrX 22895843 22895870 8 119 1.0 1.5 1.2 3.6 158 chrX 22895712 intergenic not near genes chrX 22895791 intergenic not near genes chrX 22895870 intergenic not near genes chrX_8_22895001 chrX_22895001 RAL-441 2577 chrX 22967372 22967492 chrX 23154543 23154689 diver 4 187178 2.5 10.0 6.2 0.6 187317 chrX 22967372 intergenic not near genes chrX 23061030 intergenic not near genes chrX 23154689 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-441 2578 chrX 22987084 22987121 chrX 22989762 22989798 Burdock 5 2677 5.0 2.5 3.8 1.0 2714 chrX 22987084 intron,intron stnA -,stnB - chrX 22988441 intron,intron stnA -,stnB - chrX 22989798 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-441 2579 chrX 22992381 22992429 chrX 22992532 22992580 11 146 3.0 2.0 2.5 3.1 199 chrX 22992381 intron,intron stnA -,stnB - chrX 22992480 intron,intron stnA -,stnB - chrX 22992580 3` UTR,exon stnA -,stnB - chrX_11_22990001 chrX_22990001 RAL-441 2580 chrX 22996315 22996339 chrX 23003549 23003590 roo 8 7243 3.0 2.0 2.5 2.3 7275 chrX 22996315 intron,intron stnA -,stnB - chrX 22999952 intron,intron stnA -,stnB - chrX 23003590 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-441 2581 chrX 23036361 23036410 chrX 23037782 23037831 pogo 13 1419 2.5 1.0 1.8 4.6 1470 chrX 23036361 intron CG12061 + chrX 23037096 intron CG12061 + chrX 23037831 intron CG12061 + chrX_13_23035001 chrX_23035001 RAL-441 2582 chrY 975802 975818 chrY 975885 975904 5 122 106.0 129.5 117.8 0.0 102 chrY 975802 intergenic not near genes chrY 975853 intergenic not near genes chrY 975904 intergenic not near genes chrY_5_975001 chrY_975001 RAL-441 2583 chrY 2761732 2761748 chrY 2761835 2761852 4 106 2.5 2.0 2.2 1.2 120 chrY 2761732 intergenic not near genes chrY 2761792 intergenic not near genes chrY 2761852 intergenic not near genes chrY_4_2760001 chrY_2760001 RAL-441