SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
3	chr2L	47453	47487	chr2L	52567	52592	jockey	11	5118	7.0	10.0	8.5	1.2	5139	chr2L	47453	intron	Cda5 -	chr2L	50022	intron	Cda5 -	chr2L	52592	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-440
4	chr2L	347875	347911	chr2L	355384	355402	blood	8	7507	4.5	2.0	3.2	1.9	7527	chr2L	347875	3` UTR	Plc21C +	chr2L	351638	intron	Plc21C +	chr2L	355402	3` UTR	Plc21C +	chr2L_8_350001	chr2L_350001	RAL-440
8	chr2L	686927	686947	chr2L	695968	695984	roo	6	9047	2.0	7.0	4.5	1.1	9057	chr2L	686927	intron	ds -	chr2L	691456	intron	ds -	chr2L	695984	intron	ds -	chr2L_6_690001	chr2L_690001	RAL-440
10	chr2L	770475	770494	chr2L	772244	772246	Bari1	9	1777	4.0	4.5	4.2	1.7	1771	chr2L	770475	intergenic	not near genes	chr2L	771360	intergenic	not near genes	chr2L	772246	intergenic	CR44614 +	chr2L_9_770001	chr2L_770001	RAL-440
14	chr2L	976873	976899	chr2L	984518	984547	roo	8	7645	6.5	2.5	4.5	1.5	7674	chr2L	976873	intergenic	not near genes	chr2L	980710	intergenic	not near genes	chr2L	984547	intergenic	not near genes	chr2L_8_980001	chr2L_980001	RAL-440
19	chr2L	1220124	1220161	chr2L	1227596	1227646	blood	15	7477	3.0	3.0	3.0	3.8	7522	chr2L	1220124	intron	CG42329 +	chr2L	1223885	intron	CG42329 +	chr2L	1227646	intron	CG42329 +	chr2L_15_1220001	chr2L_1220001	RAL-440
20	chr2L	1301735	1301782	chr2L	1302294	1302338	gypsy	10	552	2.0	3.5	2.8	2.6	603	chr2L	1301735	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302338	intergenic	not near genes	chr2L_10_1300001	chr2L_1300001	RAL-440
23	chr2L	1570674	1570715	chr2L	1573563	1573601	F-element	8	2886	3.0	4.0	3.5	1.8	2927	chr2L	1570674	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573601	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-440
25	chr2L	1678969	1679003	chr2L	1686444	1686463	blood	5	7475	3.5	6.5	5.0	0.8	7494	chr2L	1678969	intron	chinmo +	chr2L	1682716	intron	chinmo +	chr2L	1686463	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-440
28	chr2L	2100390	2100402	chr2L	2109525	2109546	roo	4	9145	4.0	2.5	3.2	1.0	9156	chr2L	2100390	intron	dpr3 -	chr2L	2104968	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-440
34	chr2L	2565535	2565556	chr2L	2571627	2571649	297	6	6088	4.5	2.0	3.2	1.4	6114	chr2L	2565535	exon	Cyp309a2 -	chr2L	2568592	intron	Cyp309a2 -	chr2L	2571649	exon	Cyp309a2 -	chr2L_6_2565001	chr2L_2565001	RAL-440
37	chr2L	2661198	2661233	chr2L	2663030	2663073	I-element	4	1840	1.0	1.0	1.0	2.0	1875	chr2L	2661198	intergenic	not near genes	chr2L	2662136	intergenic	not near genes	chr2L	2663073	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-440
41	chr2L	3073016	3073058	chr2L	3078233	3078270	copia	10	5219	3.0	3.5	3.2	2.4	5254	chr2L	3073016	intron	toc -	chr2L	3075643	intron	toc -	chr2L	3078270	intron	toc -	chr2L_10_3075001	chr2L_3075001	RAL-440
49	chr2L	3251482	3251526	chr2L	3259067	3259106	springer	13	7581	1.5	6.0	3.8	2.7	7624	chr2L	3251482	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259106	intergenic	not near genes	chr2L_13_3255001	chr2L_3255001	RAL-440
61	chr2L	3649793	3649805	chr2L	3654992	3655024	copia	6	5209	0.0	5.5	2.8	1.6	5231	chr2L	3649793	intron	for -	chr2L	3652408	intron	for -	chr2L	3655024	intron	for -	chr2L_6_3650001	chr2L_3650001	RAL-440
68	chr2L	4066043	4066061	chr2L	4068861	4068880	Juan	6	2826	2.5	2.0	2.2	1.9	2837	chr2L	4066043	intron	ed +	chr2L	4067462	intron	ed +	chr2L	4068880	intron	ed +	chr2L_6_4065001	chr2L_4065001	RAL-440
77	chr2L	4601685	4601737	chr2L	4609146	4609189	mdg1	14	7454	4.5	5.5	5.0	2.3	7504	chr2L	4601685	intron	dp -	chr2L	4605437	intron	dp -	chr2L	4609189	intron	dp -	chr2L_14_4605001	chr2L_4605001	RAL-440
78	chr2L	4661832	4661854	chr2L	4669432	4669433	opus	6	7592	4.0	5.0	4.5	1.1	7601	chr2L	4661832	intergenic	not near genes	chr2L	4665632	intergenic	not near genes	chr2L	4669433	intergenic	not near genes	chr2L_6_4665001	chr2L_4665001	RAL-440
83	chr2L	4918172	4918198	chr2L	4923244	4923278	jockey	6	5082	3.5	5.5	4.5	1.1	5106	chr2L	4918172	intron	hoe1 -	chr2L	4920725	intron	hoe1 -	chr2L	4923278	intron	hoe1 -	chr2L_6_4920001	chr2L_4920001	RAL-440
86	chr2L	5342753	5342793	chr2L	5345153	5345193	Doc	7	2398	4.5	2.5	3.5	1.6	2440	chr2L	5342753	intergenic	not near genes	chr2L	5343973	intergenic	not near genes	chr2L	5345193	intergenic	not near genes	chr2L_7_5340001	chr2L_5340001	RAL-440
93	chr2L	5827700	5827724	chr2L	5836724	5836735	roo	5	9020	7.5	5.0	6.2	0.7	9035	chr2L	5827700	intron	TrissinR +	chr2L	5832218	intron	TrissinR +	chr2L	5836735	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-440
94	chr2L	5827725	5827741	chr2L	5836717	5836758	roo	7	9012	5.5	4.0	4.8	1.2	9033	chr2L	5827725	intron	TrissinR +	chr2L	5832242	intron	TrissinR +	chr2L	5836758	intron	TrissinR +	chr2L_7_5830001	chr2L_5830001	RAL-440
103	chr2L	6363133	6363183	chr2L	6366079	6366114	Burdock	6	2938	4.0	1.5	2.8	1.6	2981	chr2L	6363133	intergenic	not near genes	chr2L	6364624	intergenic	not near genes	chr2L	6366114	intergenic	not near genes	chr2L_6_6360001	chr2L_6360001	RAL-440
104	chr2L	6426845	6426887	chr2L	6445123	6445147	roo	10	18272	7.0	5.0	6.0	1.4	18302	chr2L	6426845	3` UTR	CG9527 -	chr2L	6435996	intron	CG9527 -	chr2L	6445147	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	RAL-440
110	chr2L	6876781	6876794	chr2L	6882967	6883005	diver	5	6201	8.5	4.5	6.5	0.7	6224	chr2L	6876781	intron	Nlg2 +	chr2L	6879893	intron	Nlg2 +	chr2L	6883005	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-440
116	chr2L	7343320	7343353	chr2L	7350443	7350489	roo	4	7127	5.0	2.0	3.5	0.9	7169	chr2L	7343320	intron	Wnt6 +	chr2L	7346904	intron	Wnt6 +	chr2L	7350489	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-440
122	chr2L	7579190	7579225	chr2L	7579397	7579432	BS	4	207	4.0	2.0	3.0	1.0	242	chr2L	7579190	intergenic	RapGAP1 -	chr2L	7579311	intergenic	RapGAP1 -	chr2L	7579432	intergenic	RapGAP1 -	chr2L_4_7575001	chr2L_7575001	RAL-440
126	chr2L	7977071	7977113	chr2L	7984066	7984107	297	11	6985	4.0	3.5	3.8	2.3	7036	chr2L	7977071	intron	Snoo -	chr2L	7980589	intron	Snoo -	chr2L	7984107	intron,5` UTR	Snoo -,CG7231 +	chr2L_11_7980001	chr2L_7980001	RAL-440
128	chr2L	8013607	8013636	chr2L	8018816	8018823	copia	5	5207	5.0	0.0	2.5	1.4	5216	chr2L	8013607	intron	Tg +	chr2L	8016215	intron	Tg +	chr2L	8018823	intron	Tg +	chr2L_5_8015001	chr2L_8015001	RAL-440
136	chr2L	8452416	8452449	chr2L	8461590	8461640	roo	10	9181	5.5	3.5	4.5	1.8	9224	chr2L	8452416	intron	fu12 -	chr2L	8457028	intron	fu12 -	chr2L	8461640	intron	fu12 -	chr2L_10_8455001	chr2L_8455001	RAL-440
142	chr2L	8723119	8723147	chr2L	8731490	8731527	Tirant	10	8385	3.0	5.5	4.2	1.9	8408	chr2L	8723119	intron	raw -	chr2L	8727323	intron	raw -	chr2L	8731527	intron	raw -	chr2L_10_8725001	chr2L_8725001	RAL-440
147	chr2L	9000266	9000279	chr2L	9007796	9007798	roo	4	7526	13.0	5.5	9.2	0.4	7532	chr2L	9000266	intergenic	Try29F +	chr2L	9004032	intergenic	not near genes	chr2L	9007798	intergenic	not near genes	chr2L_4_9000001	chr2L_9000001	RAL-440
148	chr2L	9000281	9000309	chr2L	9007789	9007795	roo	10	7516	5.5	5.0	5.2	1.6	7514	chr2L	9000281	intergenic	Try29F +	chr2L	9004038	intergenic	not near genes	chr2L	9007795	intergenic	not near genes	chr2L_10_9000001	chr2L_9000001	RAL-440
161	chr2L	9393479	9393531	chr2L	9396464	9396508	jockey	17	2983	3.5	5.0	4.2	3.3	3029	chr2L	9393479	intron	Shawl -	chr2L	9394994	intron	Shawl -	chr2L	9396508	intron	Shawl -	chr2L_17_9390001	chr2L_9390001	RAL-440
172	chr2L	9973709	9973733	chr2L	9980846	9980851	HMS-Beagle	4	7129	7.0	3.5	5.2	0.6	7142	chr2L	9973709	intergenic	not near genes	chr2L	9977280	intergenic	not near genes	chr2L	9980851	intergenic	not near genes	chr2L_4_9975001	chr2L_9975001	RAL-440
173	chr2L	9973734	9973737	chr2L	9980845	9980846	HMS-Beagle	4	7121	6.5	3.5	5.0	0.7	7112	chr2L	9973734	intergenic	not near genes	chr2L	9977290	intergenic	not near genes	chr2L	9980846	intergenic	not near genes	chr2L_4_9975001	chr2L_9975001	RAL-440
174	chr2L	9973742	9973759	chr2L	9980844	9980874	HMS-Beagle	10	7114	4.0	3.0	3.5	2.2	7132	chr2L	9973742	intergenic	not near genes	chr2L	9977308	intergenic	not near genes	chr2L	9980874	intergenic	not near genes	chr2L_10_9975001	chr2L_9975001	RAL-440
177	chr2L	10138172	10138190	chr2L	10143436	10143438	Rt1c	6	5257	3.5	3.5	3.5	1.3	5266	chr2L	10138172	intron	CG44153 -	chr2L	10140805	intron	CG44153 -	chr2L	10143438	intron	CG44153 -	chr2L_6_10140001	chr2L_10140001	RAL-440
178	chr2L	10156334	10156355	chr2L	10163790	10163822	blood	7	7469	3.5	5.0	4.2	1.3	7488	chr2L	10156334	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160078	intron	CG44153 -	chr2L	10163822	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	RAL-440
188	chr2L	10592826	10592869	chr2L	10600507	10600537	opus	8	7676	3.0	5.0	4.0	1.6	7711	chr2L	10592826	intron	Trim9 +	chr2L	10596682	intron	Trim9 +	chr2L	10600537	intron	Trim9 +	chr2L_8_10595001	chr2L_10595001	RAL-440
195	chr2L	10862857	10862869	chr2L	10864464	10864488	Rt1c	4	1612	3.5	4.5	4.0	0.8	1631	chr2L	10862857	3` UTR	CR43807 -	chr2L	10863672	intron	CR43807 -	chr2L	10864488	3` UTR	CR43807 -	chr2L_4_10860001	chr2L_10860001	RAL-440
199	chr2L	10946960	10946968	chr2L	10956162	10956187	roo	5	9220	6.0	6.5	6.2	0.7	9227	chr2L	10946960	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956187	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	RAL-440
210	chr2L	11540597	11540607	chr2L	11548002	11548028	Tabor	5	7416	1.5	4.0	2.8	1.3	7431	chr2L	11540597	intergenic	not near genes	chr2L	11544312	intergenic	not near genes	chr2L	11548028	intergenic	not near genes	chr2L_5_11540001	chr2L_11540001	RAL-440
211	chr2L	11563636	11563665	chr2L	11568841	11568874	copia	7	5212	1.5	5.5	3.5	1.6	5238	chr2L	11563636	intergenic	not near genes	chr2L	11566255	intergenic	not near genes	chr2L	11568874	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-440
212	chr2L	11713497	11713517	chr2L	11720981	11721005	blood	4	7484	5.5	6.5	6.0	0.6	7508	chr2L	11713497	intergenic	not near genes	chr2L	11717251	intergenic	not near genes	chr2L	11721005	intergenic	CR44143 +	chr2L_4_11715001	chr2L_11715001	RAL-440
213	chr2L	11713518	11713540	chr2L	11720974	11721016	blood	10	7472	3.0	6.0	4.5	1.8	7498	chr2L	11713518	intergenic	not near genes	chr2L	11717267	intergenic	not near genes	chr2L	11721016	intergenic	CR44143 +	chr2L_10_11715001	chr2L_11715001	RAL-440
219	chr2L	12067315	12067358	chr2L	12074384	12074430	297	10	7069	3.0	3.5	3.2	2.4	7115	chr2L	12067315	intergenic	not near genes	chr2L	12070872	intergenic	not near genes	chr2L	12074430	intergenic	not near genes	chr2L_10_12070001	chr2L_12070001	RAL-440
230	chr2L	12558309	12558350	chr2L	12565458	12565483	HMS-Beagle	11	7141	1.0	1.5	1.2	5.0	7174	chr2L	12558309	intergenic	not near genes	chr2L	12561896	intergenic	not near genes	chr2L	12565483	intergenic	not near genes	chr2L_11_12560001	chr2L_12560001	RAL-440
233	chr2L	12728912	12728944	chr2L	12729169	12729204	pogo	7	260	7.0	2.5	4.8	1.2	292	chr2L	12728912	intron	MRP +	chr2L	12729058	intron	MRP +	chr2L	12729204	exon	MRP +	chr2L_7_12725001	chr2L_12725001	RAL-440
234	chr2L	12731042	12731078	chr2L	12735826	12735857	F-element	5	4784	7.5	1.5	4.5	0.9	4815	chr2L	12731042	intron	MRP +	chr2L	12733450	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-440
236	chr2L	12739166	12739205	chr2L	12743956	12743991	Doc	11	4793	3.5	6.5	5.0	1.8	4825	chr2L	12739166	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12743991	exon	MRP +	chr2L_11_12740001	chr2L_12740001	RAL-440
238	chr2L	12763811	12763872	chr2L	12764039	12764092	BS	4	224	0.0	0.0	0.0	4.0	281	chr2L	12763811	intergenic	not near genes	chr2L	12763952	intergenic	not near genes	chr2L	12764092	intergenic	not near genes	chr2L_4_12760001	chr2L_12760001	RAL-440
239	chr2L	12791593	12791626	chr2L	12795288	12795313	F-element	6	3690	4.0	7.0	5.5	0.9	3720	chr2L	12791593	intergenic	not near genes	chr2L	12793453	intergenic	not near genes	chr2L	12795313	intergenic	not near genes	chr2L_6_12790001	chr2L_12790001	RAL-440
242	chr2L	12861692	12861731	chr2L	12863162	12863196	hobo	10	1464	3.0	3.0	3.0	2.5	1504	chr2L	12861692	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-440
244	chr2L	12933850	12933883	chr2L	12941330	12941353	blood	9	7473	4.0	6.0	5.0	1.5	7503	chr2L	12933850	intergenic	not near genes	chr2L	12937602	intergenic	not near genes	chr2L	12941353	intergenic	not near genes	chr2L_9_12935001	chr2L_12935001	RAL-440
251	chr2L	13405632	13405683	chr2L	13410443	13410478	Doc	19	4808	2.0	3.0	2.5	5.4	4846	chr2L	13405632	exon	CG7110 +	chr2L	13408055	intron	CG7110 +	chr2L	13410478	intron	CG7110 +	chr2L_19_13405001	chr2L_13405001	RAL-440
254	chr2L	13481450	13481475	chr2L	13482062	13482085	jockey	8	618	5.5	8.5	7.0	1.0	635	chr2L	13481450	intron	CG42784 +	chr2L	13481768	intron	CG42784 +	chr2L	13482085	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-440
256	chr2L	13522270	13522288	chr2L	13527593	13527601	Transpac	4	5321	4.5	7.5	6.0	0.6	5331	chr2L	13522270	intron	B4 -	chr2L	13524936	intron	B4 -	chr2L	13527601	intron	B4 -	chr2L_4_13520001	chr2L_13520001	RAL-440
257	chr2L	13560402	13560419	chr2L	13565231	13565260	F-element	6	4837	3.5	3.5	3.5	1.3	4858	chr2L	13560402	intron	kuz +	chr2L	13562831	intron	kuz +	chr2L	13565260	intron	kuz +	chr2L_6_13560001	chr2L_13560001	RAL-440
259	chr2L	13761796	13761808	chr2L	13762915	13762933	Doc	4	1121	11.5	4.0	7.8	0.5	1137	chr2L	13761796	intron	TM9SF4 +	chr2L	13762364	intron	TM9SF4 +	chr2L	13762933	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-440
260	chr2L	13761825	13761834	chr2L	13762908	13762945	Doc	5	1109	5.0	4.0	4.5	0.9	1120	chr2L	13761825	intron	TM9SF4 +	chr2L	13762385	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_5_13760001	chr2L_13760001	RAL-440
262	chr2L	13853078	13853115	chr2L	13862233	13862248	roo	16	9158	5.0	2.0	3.5	3.6	9170	chr2L	13853078	intron	CenG1A +	chr2L	13857663	intron	CenG1A +	chr2L	13862248	intron	CenG1A +	chr2L_16_13855001	chr2L_13855001	RAL-440
273	chr2L	14642566	14642600	chr2L	14651736	14651770	roo	14	9175	2.0	6.0	4.0	2.8	9204	chr2L	14642566	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651770	intron	osp -	chr2L_14_14645001	chr2L_14645001	RAL-440
281	chr2L	14984370	14984391	chr2L	14991987	14992007	opus	4	7619	6.5	5.5	6.0	0.6	7637	chr2L	14984370	intron	mol -	chr2L	14988188	intron	mol -	chr2L	14992007	intron	mol -	chr2L_4_14985001	chr2L_14985001	RAL-440
294	chr2L	15446041	15446083	chr2L	15453518	15453538	blood	5	7474	2.0	2.5	2.2	1.6	7497	chr2L	15446041	intergenic	not near genes	chr2L	15449790	intergenic	not near genes	chr2L	15453538	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-440
298	chr2L	15586390	15586440	chr2L	15593462	15593511	297	9	7064	2.0	5.5	3.8	1.9	7121	chr2L	15586390	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593511	intergenic	not near genes	chr2L_9_15585001	chr2L_15585001	RAL-440
302	chr2L	15956006	15956025	chr2L	15957492	15957492	hobo	5	1481	9.0	4.0	6.5	0.7	1486	chr2L	15956006	intron	beat-Ib -	chr2L	15956749	intron	beat-Ib -	chr2L	15957492	intron	beat-Ib -	chr2L_5_15955001	chr2L_15955001	RAL-440
303	chr2L	15956030	15956057	chr2L	15957488	15957525	hobo	8	1466	5.0	3.0	4.0	1.6	1495	chr2L	15956030	intron	beat-Ib -	chr2L	15956778	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-440
306	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	18.5	20.0	19.2	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-440
315	chr2L	16511949	16511976	chr2L	16519174	16519203	HMS-Beagle	4	7223	3.5	8.0	5.8	0.6	7254	chr2L	16511949	intron	CG5953 -	chr2L	16515576	intron	CG5953 -	chr2L	16519203	intron	CG5953 -	chr2L_4_16515001	chr2L_16515001	RAL-440
326	chr2L	16958096	16958135	chr2L	16962902	16962943	Doc	8	4803	2.5	3.0	2.8	2.1	4847	chr2L	16958096	intergenic	not near genes	chr2L	16960520	intergenic	not near genes	chr2L	16962943	intergenic	not near genes	chr2L_8_16960001	chr2L_16960001	RAL-440
335	chr2L	17167587	17167596	chr2L	17167818	17167856	pogo	4	246	3.0	4.0	3.5	0.9	269	chr2L	17167587	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167722	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167856	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	RAL-440
336	chr2L	17199171	17199180	chr2L	17200643	17200663	hobo	4	1482	6.5	3.0	4.8	0.7	1492	chr2L	17199171	intron	beat-IIIc -	chr2L	17199917	intron	beat-IIIc -	chr2L	17200663	intron	beat-IIIc -	chr2L_4_17195001	chr2L_17195001	RAL-440
338	chr2L	17273190	17273228	chr2L	17277975	17277993	F-element	15	4786	5.0	6.5	5.8	2.2	4803	chr2L	17273190	intergenic	not near genes	chr2L	17275592	intergenic	not near genes	chr2L	17277993	intergenic	not near genes	chr2L_15_17275001	chr2L_17275001	RAL-440
347	chr2L	17727861	17727882	chr2L	17729338	17729351	hobo	5	1471	3.0	7.0	5.0	0.8	1490	chr2L	17727861	intron	CadN -	chr2L	17728606	intron	CadN -	chr2L	17729351	intron	CadN -	chr2L_5_17725001	chr2L_17725001	RAL-440
355	chr2L	17911956	17911980	chr2L	17914138	17914164	pogo	4	2184	4.0	4.0	4.0	0.8	2208	chr2L	17911956	intergenic	not near genes	chr2L	17913060	intergenic	not near genes	chr2L	17914164	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-440
356	chr2L	17951941	17951979	chr2L	17953418	17953446	hobo	19	1480	4.0	1.5	2.8	5.0	1505	chr2L	17951941	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953446	intergenic	not near genes	chr2L_19_17950001	chr2L_17950001	RAL-440
363	chr2L	18051885	18051909	chr2L	18061026	18061046	roo	7	9153	3.5	4.5	4.0	1.4	9161	chr2L	18051885	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061046	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-440
369	chr2L	18408024	18408043	chr2L	18412814	18412842	Doc	8	4796	3.5	5.0	4.2	1.5	4818	chr2L	18408024	intergenic	not near genes	chr2L	18410433	intergenic	not near genes	chr2L	18412842	intergenic	not near genes	chr2L_8_18410001	chr2L_18410001	RAL-440
382	chr2L	19147350	19147397	chr2L	19154405	19154431	297	12	7040	3.5	7.0	5.2	1.9	7081	chr2L	19147350	intron	brat +	chr2L	19150890	intron	brat +	chr2L	19154431	intron	brat +	chr2L_12_19150001	chr2L_19150001	RAL-440
386	chr2L	19345007	19345035	chr2L	19357226	19357247	blood	10	12222	5.5	7.0	6.2	1.4	12240	chr2L	19345007	intron	dnt -	chr2L	19351127	intron	dnt -	chr2L	19357247	intron	dnt -	chr2L_10_19350001	chr2L_19350001	RAL-440
394	chr2L	19620088	19620119	chr2L	19621082	19621128	jockey	5	994	7.5	2.5	5.0	0.8	1040	chr2L	19620088	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621128	intron	Lar +	chr2L_5_19620001	chr2L_19620001	RAL-440
395	chr2L	19620121	19620130	chr2L	19621079	19621122	jockey	5	982	5.5	2.5	4.0	1.0	1001	chr2L	19620121	intron	Lar +	chr2L	19620622	intron	Lar +	chr2L	19621122	intron	Lar +	chr2L_5_19620001	chr2L_19620001	RAL-440
396	chr2L	19652559	19652601	chr2L	19674005	19674055	opus	14	21449	5.5	2.5	4.0	2.8	21496	chr2L	19652559	intron	Lar +	chr2L	19663307	intron	Lar +	chr2L	19674055	intron	Lar +	chr2L_14_19660001	chr2L_19660001	RAL-440
399	chr2L	19703530	19703570	chr2L	19712673	19712710	roo	15	9143	7.5	1.0	4.2	2.9	9180	chr2L	19703530	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712710	intron	Lar +	chr2L_15_19705001	chr2L_19705001	RAL-440
401	chr2L	19737366	19737386	chr2L	19740822	19740823	1360	8	3457	2.0	3.5	2.8	2.1	3457	chr2L	19737366	intergenic	Nf-YB +	chr2L	19739094	intergenic	not near genes	chr2L	19740823	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	RAL-440
402	chr2L	19762799	19762833	chr2L	19763053	19763095	pogo	10	257	1.5	2.5	2.0	3.3	296	chr2L	19762799	5` UTR	fbp -	chr2L	19762947	intron	fbp -	chr2L	19763095	intron	fbp -	chr2L_10_19760001	chr2L_19760001	RAL-440
407	chr2L	20005880	20005902	chr2L	20010947	20010998	flea	6	5084	5.5	1.5	3.5	1.3	5118	chr2L	20005880	intron	CG43861 -	chr2L	20008439	intron	CG43861 -	chr2L	20010998	intron	CG43861 -	chr2L_6_20005001	chr2L_20005001	RAL-440
409	chr2L	20272099	20272141	chr2L	20282824	20282855	copia	12	10720	6.5	5.5	6.0	1.7	10756	chr2L	20272099	intergenic	not near genes	chr2L	20277477	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_12_20275001	chr2L_20275001	RAL-440
412	chr2L	20303163	20303178	chr2L	20310646	20310656	blood	4	7483	0.0	2.0	1.0	2.0	7493	chr2L	20303163	intergenic	not near genes	chr2L	20306910	intergenic	not near genes	chr2L	20310656	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-440
415	chr2L	20372210	20372243	chr2L	20372471	20372485	pogo	8	255	1.0	3.0	2.0	2.7	275	chr2L	20372210	intergenic	Ugt37a1 -	chr2L	20372348	intergenic	Ugt37a1 -	chr2L	20372485	exon	Ugt37a1 -	chr2L_8_20370001	chr2L_20370001	RAL-440
418	chr2L	20568658	20568687	chr2L	20569054	20569091	X-element	7	403	5.5	2.0	3.8	1.5	433	chr2L	20568658	intron	CR45347 +	chr2L	20568874	intron	CR45347 +	chr2L	20569091	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RAL-440
421	chr2L	20576215	20576244	chr2L	20583689	20583717	blood	7	7473	5.5	5.5	5.5	1.1	7502	chr2L	20576215	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583717	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-440
426	chr2L	20835814	20835838	chr2L	20836542	20836575	Quasimodo	6	727	0.5	4.5	2.5	1.7	761	chr2L	20835814	5` UTR	Oseg5 -	chr2L	20836194	intergenic	Oseg5 -,Spn38F -	chr2L	20836575	intergenic	Spn38F -	chr2L_6_20835001	chr2L_20835001	RAL-440
427	chr2L	20891525	20891543	chr2L	20896639	20896664	jockey	4	5114	5.5	5.0	5.2	0.6	5139	chr2L	20891525	intron,intron	CG43739 -,sky -	chr2L	20894094	intron,intron	CG43739 -,sky -	chr2L	20896664	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	RAL-440
429	chr2L	20976625	20976680	chr2L	20981458	20981463	X-element	15	4825	3.0	4.0	3.5	3.3	4838	chr2L	20976625	intron	CG42238 -	chr2L	20979044	intron	CG42238 -	chr2L	20981463	intron	CG42238 -	chr2L_15_20975001	chr2L_20975001	RAL-440
430	chr2L	21020271	21020301	chr2L	21023950	21023986	NOF	10	3682	7.5	2.5	5.0	1.7	3715	chr2L	21020271	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_10_21020001	chr2L_21020001	RAL-440
431	chr2L	21041126	21041165	chr2L	21049400	21049442	Tirant	4	8276	4.0	5.5	4.8	0.7	8316	chr2L	21041126	intron	CG42238 -	chr2L	21045284	intron	CG42238 -	chr2L	21049442	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-440
437	chr2L	21347544	21347574	chr2L	21355025	21355066	blood	7	7487	2.5	1.0	1.8	2.5	7522	chr2L	21347544	intron	Tsp39D +	chr2L	21351305	intron	Tsp39D +	chr2L	21355066	intron	Tsp39D +	chr2L_7_21350001	chr2L_21350001	RAL-440
439	chr2L	21597027	21597058	chr2L	21604781	21604805	roo	7	7754	4.5	4.0	4.2	1.3	7778	chr2L	21597027	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604805	intergenic	not near genes	chr2L_7_21600001	chr2L_21600001	RAL-440
441	chr2L	21691816	21691852	chr2L	21698304	21698323	Burdock	6	6478	4.5	1.0	2.8	1.6	6507	chr2L	21691816	intron	CG31619 +	chr2L	21695070	intron	CG31619 +	chr2L	21698323	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-440
449	chr2L	21981689	21981704	chr2L	21990863	21990875	roo	4	9172	4.0	12.0	8.0	0.4	9186	chr2L	21981689	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990875	exon	CG2528 -	chr2L_4_21985001	chr2L_21985001	RAL-440
456	chr2L	22548921	22548945	chr2L	22550151	22550175	1360	8	1234	0.5	12.0	6.2	1.1	1254	chr2L	22548921	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550175	intergenic	CG17493 +	chr2L_8_22545001	chr2L_22545001	RAL-440
457	chr2L	22581953	22582001	chr2L	22583762	22583809	S-element	5	1800	2.5	5.0	3.8	1.0	1856	chr2L	22581953	intron	CG17494 +	chr2L	22582881	intron	CG17494 +	chr2L	22583809	intron	CG17494 +	chr2L_5_22580001	chr2L_22580001	RAL-440
460	chr2L	22679811	22679824	chr2L	22684586	22684605	F-element	6	4780	3.5	7.5	5.5	0.9	4794	chr2L	22679811	intron	CG40006 -	chr2L	22682208	intron	CG40006 -	chr2L	22684605	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-440
464	chr2L	22776410	22776441	chr2L	22778212	22778247	S-element	9	1803	3.5	2.5	3.0	2.2	1837	chr2L	22776410	intergenic	not near genes	chr2L	22777328	intergenic	not near genes	chr2L	22778247	intergenic	not near genes	chr2L_9_22775001	chr2L_22775001	RAL-440
469	chr2R	1516594	1516603	chr2R	1521333	1521336	1731	8	4741	13.0	8.0	10.5	0.7	4742	chr2R	1516594	exon	Maf1 -	chr2R	1518965	intron	Maf1 -	chr2R	1521336	5` UTR	Maf1 -	chr2R_8_1515001	chr2R_1515001	RAL-440
471	chr2R	2498979	2499016	chr2R	2508132	2508183	roo	9	9161	6.5	4.5	5.5	1.4	9204	chr2R	2498979	intron	MFS17 -	chr2R	2503581	intron	MFS17 -	chr2R	2508183	intron	MFS17 -	chr2R_9_2500001	chr2R_2500001	RAL-440
479	chr2R	4750327	4750377	chr2R	4751497	4751516	1360	13	1162	2.0	1.5	1.8	4.6	1189	chr2R	4750327	intron	conu +	chr2R	4750922	intron	conu +	chr2R	4751516	intron	conu +	chr2R_13_4750001	chr2R_4750001	RAL-440
492	chr2R	5543197	5543222	chr2R	5547294	5547326	invader1	5	4098	0.0	4.0	2.0	1.7	4129	chr2R	5543197	intron	CG30438 +	chr2R	5545262	intron	CG30438 +	chr2R	5547326	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-440
497	chr2R	5869255	5869308	chr2R	5874351	5874387	flea	21	5087	2.0	5.5	3.8	4.4	5132	chr2R	5869255	intergenic	not near genes	chr2R	5871821	intergenic	not near genes	chr2R	5874387	intergenic	not near genes	chr2R_21_5870001	chr2R_5870001	RAL-440
506	chr2R	6494529	6494555	chr2R	6499293	6499329	F-element	7	4769	2.0	1.5	1.8	2.5	4800	chr2R	6494529	intergenic	not near genes	chr2R	6496929	intergenic	not near genes	chr2R	6499329	intergenic	not near genes	chr2R_7_6495001	chr2R_6495001	RAL-440
512	chr2R	6952151	6952179	chr2R	6959745	6959776	opus	5	7597	3.5	2.0	2.8	1.3	7625	chr2R	6952151	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959776	intron,intron	mim -,CheB42c -	chr2R_5_6955001	chr2R_6955001	RAL-440
517	chr2R	7196556	7196592	chr2R	7201341	7201379	F-element	6	4784	2.5	2.0	2.2	1.9	4823	chr2R	7196556	intron	pk +	chr2R	7198968	intron	pk +	chr2R	7201379	intron	pk +	chr2R_6_7195001	chr2R_7195001	RAL-440
518	chr2R	7434885	7434911	chr2R	7439204	7439223	Juan	4	4311	3.0	5.5	4.2	0.8	4338	chr2R	7434885	intergenic	so +	chr2R	7437054	intergenic	not near genes	chr2R	7439223	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-440
520	chr2R	7608399	7608437	chr2R	7613611	7613633	I-element	11	5210	3.5	6.0	4.8	1.9	5234	chr2R	7608399	intron	CG1358 -	chr2R	7611016	intron	CG1358 -	chr2R	7613633	intron	CG1358 -	chr2R_11_7610001	chr2R_7610001	RAL-440
522	chr2R	7815664	7815700	chr2R	7822139	7822185	Burdock	7	6481	4.0	2.5	3.2	1.7	6521	chr2R	7815664	intergenic	CG1882 +	chr2R	7818924	intergenic	not near genes	chr2R	7822185	3` UTR	cathD -	chr2R_7_7815001	chr2R_7815001	RAL-440
523	chr2R	7869179	7869209	chr2R	7873975	7873997	Doc	11	4793	5.0	2.5	3.8	2.3	4818	chr2R	7869179	intron	Dgk -	chr2R	7871588	intron	Dgk -	chr2R	7873997	intron	Dgk -	chr2R_11_7870001	chr2R_7870001	RAL-440
534	chr2R	8160928	8160936	chr2R	8161027	8161046	1360	4	102	5.0	8.0	6.5	0.5	118	chr2R	8160928	exon	CG8708 -	chr2R	8160987	intron	CG8708 -	chr2R	8161046	intron	CG8708 -	chr2R_4_8160001	chr2R_8160001	RAL-440
535	chr2R	8160938	8160948	chr2R	8161026	8161055	1360	5	97	4.0	7.5	5.8	0.7	117	chr2R	8160938	intron	CG8708 -	chr2R	8160996	intron	CG8708 -	chr2R	8161055	intron	CG8708 -	chr2R_5_8160001	chr2R_8160001	RAL-440
540	chr2R	8330858	8330871	chr2R	8331364	8331377	roo	5	505	4.5	4.5	4.5	0.9	519	chr2R	8330858	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331377	intron	pdm3 +	chr2R_5_8330001	chr2R_8330001	RAL-440
541	chr2R	8330873	8330887	chr2R	8331363	8331373	roo	6	494	2.0	4.5	3.2	1.4	500	chr2R	8330873	intron	pdm3 +	chr2R	8331123	intron	pdm3 +	chr2R	8331373	intron	pdm3 +	chr2R_6_8330001	chr2R_8330001	RAL-440
542	chr2R	8398211	8398236	chr2R	8402993	8402998	Doc	8	4783	4.0	3.0	3.5	1.8	4787	chr2R	8398211	intron	CG2121 -	chr2R	8400604	intron	CG2121 -	chr2R	8402998	intron	CG2121 -	chr2R_8_8400001	chr2R_8400001	RAL-440
543	chr2R	8416305	8416321	chr2R	8417143	8417152	I-element	6	834	4.0	2.0	3.0	1.5	847	chr2R	8416305	intergenic	not near genes	chr2R	8416728	intergenic	CG43296 -	chr2R	8417152	intergenic	CG43296 -	chr2R_6_8415001	chr2R_8415001	RAL-440
546	chr2R	8566018	8566058	chr2R	8566989	8567028	1360	15	967	3.0	12.0	7.5	1.8	1010	chr2R	8566018	5` UTR	Cyp6a14 -	chr2R	8566523	5` UTR	Cyp6a14 -	chr2R	8567028	5` UTR	Cyp6a14 -	chr2R_15_8565001	chr2R_8565001	RAL-440
556	chr2R	8722766	8722785	chr2R	8723005	8723043	pogo	10	247	6.0	3.5	4.8	1.7	277	chr2R	8722766	intron	CG14767 -	chr2R	8722904	intron	CG14767 -	chr2R	8723043	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	RAL-440
561	chr2R	9212690	9212719	chr2R	9213178	9213207	roo	7	486	4.0	2.0	3.0	1.8	517	chr2R	9212690	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213207	5` UTR	CR45309 +	chr2R_7_9210001	chr2R_9210001	RAL-440
566	chr2R	9480061	9480106	chr2R	9490609	9490646	roo	4	10543	3.5	3.0	3.2	1.0	10585	chr2R	9480061	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490646	intergenic	not near genes	chr2R_4_9485001	chr2R_9485001	RAL-440
574	chr2R	9726606	9726639	chr2R	9734165	9734199	17.6	10	7561	4.0	2.0	3.0	2.5	7593	chr2R	9726606	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734199	intron	sqa -	chr2R_10_9730001	chr2R_9730001	RAL-440
576	chr2R	9871038	9871068	chr2R	9871532	9871547	roo	8	494	1.0	4.5	2.8	2.1	509	chr2R	9871038	intron	cbx -	chr2R	9871292	intron	cbx -	chr2R	9871547	intron,5` UTR	cbx -,CG18446 +	chr2R_8_9870001	chr2R_9870001	RAL-440
579	chr2R	10005839	10005876	chr2R	10007017	10007061	1360	11	1172	6.0	3.5	4.8	1.9	1222	chr2R	10005839	intron	Pka-R2 -	chr2R	10006450	intron	Pka-R2 -	chr2R	10007061	intron	Pka-R2 -	chr2R_11_10005001	chr2R_10005001	RAL-440
584	chr2R	10176859	10176907	chr2R	10186044	10186093	roo	11	9181	4.0	2.5	3.2	2.6	9234	chr2R	10176859	intron	KCNQ -	chr2R	10181476	intron	KCNQ -	chr2R	10186093	intron	KCNQ -	chr2R_11_10180001	chr2R_10180001	RAL-440
604	chr2R	10585579	10585591	chr2R	10594154	10594180	Tirant	6	8584	5.0	3.0	4.0	1.2	8601	chr2R	10585579	intron	psq +	chr2R	10589880	intron	psq +	chr2R	10594180	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-440
609	chr2R	10948044	10948062	chr2R	10955577	10955620	17.6	6	7545	1.5	2.5	2.0	2.0	7576	chr2R	10948044	intergenic	not near genes	chr2R	10951832	intergenic	not near genes	chr2R	10955620	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-440
610	chr2R	10979650	10979670	chr2R	10980133	10980137	297	4	478	2.0	4.0	3.0	1.0	487	chr2R	10979650	intergenic	not near genes	chr2R	10979894	intergenic	not near genes	chr2R	10980137	intergenic	not near genes	chr2R_4_10975001	chr2R_10975001	RAL-440
611	chr2R	11019896	11019913	chr2R	11024940	11024970	jockey	6	5062	1.5	1.0	1.2	2.7	5074	chr2R	11019896	intron	luna -	chr2R	11022433	intron	luna -	chr2R	11024970	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-440
615	chr2R	11207811	11207840	chr2R	11208009	11208018	BS	12	197	9.5	5.5	7.5	1.4	207	chr2R	11207811	intron	shn +	chr2R	11207914	intron	shn +	chr2R	11208018	intron	shn +	chr2R_12_11205001	chr2R_11205001	RAL-440
616	chr2R	11207842	11207848	chr2R	11208006	11208047	BS	4	196	5.0	4.5	4.8	0.7	205	chr2R	11207842	intron	shn +	chr2R	11207944	intron	shn +	chr2R	11208047	intron	shn +	chr2R_4_11205001	chr2R_11205001	RAL-440
617	chr2R	11206453	11206492	chr2R	11209290	11209300	BS	5	2824	12.0	12.5	12.2	0.4	2847	chr2R	11206453	intron	shn +	chr2R	11207876	intron	shn +	chr2R	11209300	exon	shn +	chr2R_5_11205001	chr2R_11205001	RAL-440
622	chr2R	11415535	11415551	chr2R	11418680	11418701	opus	9	3153	4.5	10.0	7.2	1.1	3166	chr2R	11415535	intron	Drip -	chr2R	11417118	intron	Drip -	chr2R	11418701	intron	Drip -	chr2R_9_11415001	chr2R_11415001	RAL-440
623	chr2R	11472644	11472677	chr2R	11473845	11473878	pogo	12	1209	5.5	4.5	5.0	2.0	1234	chr2R	11472644	intergenic	not near genes	chr2R	11473261	intergenic	not near genes	chr2R	11473878	intergenic	not near genes	chr2R_12_11470001	chr2R_11470001	RAL-440
636	chr2R	12501700	12501718	chr2R	12503855	12503879	Rt1c	5	2154	2.0	5.0	3.5	1.1	2179	chr2R	12501700	intron	fdl -	chr2R	12502790	intron	fdl -	chr2R	12503879	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-440
642	chr2R	12707499	12707547	chr2R	12715885	12715926	roo	11	8378	0.5	1.0	0.8	6.1	8427	chr2R	12707499	intron	CG42663 +	chr2R	12711712	intron	CG42663 +	chr2R	12715926	intron	CG42663 +	chr2R_11_12710001	chr2R_12710001	RAL-440
644	chr2R	12789276	12789316	chr2R	12797657	12797670	roo	4	8362	3.0	2.5	2.8	1.1	8394	chr2R	12789276	intron,3` UTR	sca +,CR45137 -	chr2R	12793473	intron,intron	sca +,CR45137 -	chr2R	12797670	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-440
645	chr2R	12819446	12819464	chr2R	12824526	12824546	jockey	5	5080	3.5	5.5	4.5	0.9	5100	chr2R	12819446	intergenic	not near genes	chr2R	12821996	intergenic	not near genes	chr2R	12824546	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-440
651	chr2R	13136820	13136861	chr2R	13141638	13141673	Doc	7	4812	6.0	3.5	4.8	1.2	4853	chr2R	13136820	exon	Cap-G +	chr2R	13139246	intron	Cap-G +	chr2R	13141673	intron	Cap-G +	chr2R_7_13135001	chr2R_13135001	RAL-440
658	chr2R	13580482	13580531	chr2R	13580848	13580877	jockey	5	355	1.5	4.5	3.0	1.2	395	chr2R	13580482	3` UTR	CG6191 -	chr2R	13580680	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580877	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-440
659	chr2R	13728114	13728160	chr2R	13735790	13735837	opus	8	7674	2.0	3.0	2.5	2.3	7723	chr2R	13728114	intron	fas +	chr2R	13731976	intron	fas +	chr2R	13735837	intron	fas +	chr2R_8_13730001	chr2R_13730001	RAL-440
663	chr2R	13905600	13905635	chr2R	13907585	13907591	Rt1a	6	1983	4.5	1.5	3.0	1.5	1991	chr2R	13905600	intron	shot -	chr2R	13906596	intron	shot -	chr2R	13907591	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-440
675	chr2R	14467303	14467318	chr2R	14476470	14476476	roo	5	9167	1.5	5.5	3.5	1.1	9173	chr2R	14467303	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476476	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	RAL-440
676	chr2R	14467319	14467327	chr2R	14476463	14476505	roo	6	9161	1.5	4.5	3.0	1.5	9186	chr2R	14467319	intergenic	not near genes	chr2R	14471912	intergenic	not near genes	chr2R	14476505	5` UTR	CR44462 +	chr2R_6_14470001	chr2R_14470001	RAL-440
681	chr2R	14889197	14889227	chr2R	14897815	14897844	Max-element	7	8618	7.5	0.0	3.8	1.5	8647	chr2R	14889197	intergenic	Cyp6a8 -	chr2R	14893520	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_7_14890001	chr2R_14890001	RAL-440
688	chr2R	15004724	15004753	chr2R	15005063	15005101	jockey	6	342	0.0	5.5	2.8	1.6	377	chr2R	15004724	intergenic	not near genes	chr2R	15004912	intergenic	not near genes	chr2R	15005101	intergenic	not near genes	chr2R_6_15000001	chr2R_15000001	RAL-440
689	chr2R	15015467	15015485	chr2R	15022882	15022927	mdg1	11	7437	4.5	3.5	4.0	2.2	7460	chr2R	15015467	intron	hbs +	chr2R	15019197	intron	hbs +	chr2R	15022927	intron	hbs +	chr2R_11_15015001	chr2R_15015001	RAL-440
692	chr2R	15084977	15085001	chr2R	15092038	15092063	297	7	7064	2.5	2.5	2.5	2.0	7086	chr2R	15084977	intergenic	not near genes	chr2R	15088520	intergenic	not near genes	chr2R	15092063	5` UTR	CR44457 +	chr2R_7_15085001	chr2R_15085001	RAL-440
693	chr2R	15119306	15119347	chr2R	15127799	15127820	Tirant	4	8486	6.5	9.0	7.8	0.5	8514	chr2R	15119306	intron	chn +	chr2R	15123563	intron	chn +	chr2R	15127820	intron	chn +	chr2R_4_15120001	chr2R_15120001	RAL-440
712	chr2R	17147249	17147267	chr2R	17152280	17152313	jockey	8	5043	6.5	3.5	5.0	1.3	5064	chr2R	17147249	intergenic	not near genes	chr2R	17149781	intergenic	not near genes	chr2R	17152313	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	RAL-440
714	chr2R	17236506	17236537	chr2R	17241720	17241751	copia	7	5210	5.0	5.5	5.2	1.1	5245	chr2R	17236506	intron	mbl +	chr2R	17239128	intron	mbl +	chr2R	17241751	intron	mbl +	chr2R_7_17235001	chr2R_17235001	RAL-440
719	chr2R	17485907	17485918	chr2R	17490696	17490699	F-element	4	4786	5.0	1.0	3.0	1.0	4792	chr2R	17485907	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488303	intron	NT5E-2 +	chr2R	17490699	intron	NT5E-2 +	chr2R_4_17485001	chr2R_17485001	RAL-440
723	chr2R	17784015	17784057	chr2R	17784267	17784300	pogo	11	245	3.5	4.0	3.8	2.3	285	chr2R	17784015	intergenic	mir-31a -	chr2R	17784158	intergenic	mir-31a -	chr2R	17784300	intergenic	mir-31a -	chr2R_11_17780001	chr2R_17780001	RAL-440
729	chr2R	18358383	18358405	chr2R	18372604	18372629	roo	10	14224	5.0	6.0	5.5	1.5	14246	chr2R	18358383	intergenic	not near genes	chr2R	18365506	intergenic	not near genes	chr2R	18372629	intergenic	not near genes	chr2R_10_18365001	chr2R_18365001	RAL-440
730	chr2R	18358409	18358418	chr2R	18372598	18372640	roo	4	14212	4.0	6.0	5.0	0.7	14231	chr2R	18358409	intergenic	not near genes	chr2R	18365524	intergenic	not near genes	chr2R	18372640	intergenic	not near genes	chr2R_4_18365001	chr2R_18365001	RAL-440
736	chr2R	18575797	18575831	chr2R	18581985	18581995	3S18	5	6189	2.0	3.0	2.5	1.4	6198	chr2R	18575797	intron	GEFmeso -	chr2R	18578896	intron	GEFmeso -	chr2R	18581995	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-440
737	chr2R	18590854	18590895	chr2R	18600020	18600059	roo	5	9165	3.0	1.0	2.0	1.7	9205	chr2R	18590854	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600059	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-440
758	chr2R	19776586	19776613	chr2R	19779917	19779956	jockey	10	3334	3.5	4.0	3.8	2.1	3370	chr2R	19776586	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779956	intergenic	not near genes	chr2R_10_19775001	chr2R_19775001	RAL-440
759	chr2R	19914828	19914864	chr2R	19922260	19922271	mdg1	5	7422	3.5	2.5	3.0	1.2	7443	chr2R	19914828	intergenic	not near genes	chr2R	19918550	intergenic	not near genes	chr2R	19922271	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-440
761	chr2R	20069226	20069254	chr2R	20071874	20071912	opus	10	2652	0.5	1.5	1.0	5.0	2686	chr2R	20069226	intergenic	not near genes	chr2R	20070569	intergenic	not near genes	chr2R	20071912	intergenic	not near genes	chr2R_10_20070001	chr2R_20070001	RAL-440
772	chr2R	20739430	20739474	chr2R	20744209	20744244	F-element	7	4777	3.5	1.0	2.2	2.2	4814	chr2R	20739430	intron	dpr +	chr2R	20741837	intron	dpr +	chr2R	20744244	intron	dpr +	chr2R_7_20740001	chr2R_20740001	RAL-440
773	chr2R	20783312	20783328	chr2R	20788089	20788090	F-element	6	4781	5.5	4.5	5.0	1.0	4778	chr2R	20783312	intergenic	not near genes	chr2R	20785701	intergenic	not near genes	chr2R	20788090	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-440
783	chr2R	21151104	21151128	chr2R	21153755	21153780	opus	5	2647	8.0	7.0	7.5	0.6	2676	chr2R	21151104	intron	CG30389 -	chr2R	21152442	intron	CG30389 -	chr2R	21153780	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	RAL-440
784	chr2R	21151131	21151145	chr2R	21153749	21153794	opus	4	2638	5.5	6.0	5.8	0.6	2663	chr2R	21151131	intron	CG30389 -	chr2R	21152462	intron	CG30389 -	chr2R	21153794	intron	CG30389 -	chr2R_4_21150001	chr2R_21150001	RAL-440
793	chr2R	21753062	21753112	chr2R	21753567	21753582	roo	11	496	3.5	2.5	3.0	2.8	520	chr2R	21753062	intergenic	not near genes	chr2R	21753322	intergenic	not near genes	chr2R	21753582	intergenic	not near genes	chr2R_11_21750001	chr2R_21750001	RAL-440
809	chr2R	22349689	22349699	chr2R	22351476	22351486	jockey	4	1790	7.0	3.5	5.2	0.6	1797	chr2R	22349689	intron	Liprin-gamma -	chr2R	22350588	intron	Liprin-gamma -	chr2R	22351486	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-440
810	chr2R	22349701	22349716	chr2R	22351473	22351515	jockey	4	1786	5.5	3.0	4.2	0.8	1814	chr2R	22349701	intron	Liprin-gamma -	chr2R	22350608	intron	Liprin-gamma -	chr2R	22351515	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-440
811	chr2R	22525735	22525781	chr2R	22529305	22529351	jockey	11	3570	4.5	4.5	4.5	2.0	3616	chr2R	22525735	intron	px -	chr2R	22527543	intron	px -	chr2R	22529351	intron	px -	chr2R_11_22525001	chr2R_22525001	RAL-440
817	chr2R	22774948	22774957	chr2R	22775387	22775395	jockey	4	436	10.0	4.5	7.2	0.5	447	chr2R	22774948	intron	CG42260 -	chr2R	22775172	intron	CG42260 -	chr2R	22775395	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-440
818	chr2R	22774968	22775002	chr2R	22775382	22775421	jockey	7	419	2.0	4.5	3.2	1.7	453	chr2R	22774968	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775421	intron	CG42260 -	chr2R_7_22775001	chr2R_22775001	RAL-440
828	chr2R	23402613	23402637	chr2R	23407683	23407732	flea	7	5079	5.0	5.5	5.2	1.1	5119	chr2R	23402613	intergenic	CG3520 -	chr2R	23405172	intergenic	not near genes	chr2R	23407732	intergenic	not near genes	chr2R_7_23405001	chr2R_23405001	RAL-440
836	chr2R	23914291	23914332	chr2R	23921921	23921929	412	16	7622	2.5	3.5	3.0	4.0	7638	chr2R	23914291	exon	kcc +	chr2R	23918110	intron	kcc +	chr2R	23921929	intron	kcc +	chr2R_16_23915001	chr2R_23915001	RAL-440
839	chr2R	24147072	24147094	chr2R	24154653	24154667	412	4	7580	3.0	6.0	4.5	0.7	7595	chr2R	24147072	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154667	intron	Dat +	chr2R_4_24150001	chr2R_24150001	RAL-440
840	chr2R	24177215	24177268	chr2R	24184720	24184753	412	21	7497	5.5	3.5	4.5	3.8	7538	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180984	intron	Nop60B +	chr2R	24184753	3` UTR	Nop60B +	chr2R_21_24180001	chr2R_24180001	RAL-440
841	chr2R	24353421	24353441	chr2R	24361803	24361805	roo	4	8374	5.0	4.0	4.5	0.7	8384	chr2R	24353421	intron,intron	bs +,CR44811 -	chr2R	24357613	intron,intron	bs +,CR44811 -	chr2R	24361805	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-440
842	chr2R	24353442	24353460	chr2R	24361799	24361824	roo	4	8366	2.5	4.0	3.2	1.0	8382	chr2R	24353442	intron,intron	bs +,CR44811 -	chr2R	24357633	intron,intron	bs +,CR44811 -	chr2R	24361824	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-440
849	chr2R	24727889	24727918	chr2R	24735397	24735436	mdg1	6	7508	1.0	6.5	3.8	1.2	7547	chr2R	24727889	intron	Mid1 -	chr2R	24731662	intron	Mid1 -	chr2R	24735436	intron	Mid1 -	chr2R_6_24730001	chr2R_24730001	RAL-440
859	chr2R	25141643	25141683	chr2R	25159338	25159385	roo	12	17702	3.0	6.5	4.8	2.1	17742	chr2R	25141643	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159385	intergenic	not near genes	chr2R_12_25150001	chr2R_25150001	RAL-440
863	chr3L	110206	110211	chr3L	119388	119398	roo	4	9186	6.0	7.5	6.8	0.5	9192	chr3L	110206	intergenic	not near genes	chr3L	114802	intergenic	not near genes	chr3L	119398	intergenic	not near genes	chr3L_4_110001	chr3L_110001	RAL-440
864	chr3L	110214	110237	chr3L	119381	119416	roo	11	9176	5.5	6.0	5.8	1.6	9202	chr3L	110214	intergenic	not near genes	chr3L	114815	intergenic	not near genes	chr3L	119416	intergenic	not near genes	chr3L_11_110001	chr3L_110001	RAL-440
865	chr3L	402705	402718	chr3L	409746	409788	297	6	7061	3.0	7.0	5.0	1.0	7083	chr3L	402705	intergenic	not near genes	chr3L	406246	intergenic	not near genes	chr3L	409788	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-440
872	chr3L	789917	789946	chr3L	790411	790449	roo	7	493	1.0	5.0	3.0	1.8	532	chr3L	789917	intergenic	not near genes	chr3L	790183	intergenic	not near genes	chr3L	790449	intergenic	not near genes	chr3L_7_790001	chr3L_790001	RAL-440
873	chr3L	858002	858022	chr3L	866482	866485	Tirant	5	8477	4.0	3.5	3.8	1.0	8483	chr3L	858002	intergenic	not near genes	chr3L	862244	intergenic	not near genes	chr3L	866485	intergenic	CG12502 +	chr3L_5_860001	chr3L_860001	RAL-440
874	chr3L	925173	925202	chr3L	932613	932648	mdg1	10	7438	4.5	5.0	4.8	1.7	7475	chr3L	925173	intron	Glut1 +	chr3L	928910	intron	Glut1 +	chr3L	932648	intron	Glut1 +	chr3L_10_925001	chr3L_925001	RAL-440
876	chr3L	939769	939798	chr3L	940892	940915	jockey	8	1125	7.5	6.0	6.8	1.0	1146	chr3L	939769	intron	Glut1 +	chr3L	940342	intron	Glut1 +	chr3L	940915	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RAL-440
885	chr3L	1154115	1154122	chr3L	1163284	1163284	roo	4	9167	9.0	3.0	6.0	0.6	9169	chr3L	1154115	intron	bab2 -	chr3L	1158700	intron	bab2 -	chr3L	1163284	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-440
886	chr3L	1154129	1154163	chr3L	1163278	1163320	roo	14	9160	4.0	3.0	3.5	3.1	9191	chr3L	1154129	intron	bab2 -	chr3L	1158724	intron	bab2 -	chr3L	1163320	intron	bab2 -	chr3L_14_1155001	chr3L_1155001	RAL-440
888	chr3L	1219604	1219625	chr3L	1227328	1227349	412	6	7735	1.0	4.0	2.5	1.7	7745	chr3L	1219604	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227349	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-440
897	chr3L	1740838	1740874	chr3L	1741102	1741123	pogo	8	255	5.0	3.5	4.2	1.5	285	chr3L	1740838	intron	Gk +	chr3L	1740980	intron	Gk +	chr3L	1741123	intron	Gk +	chr3L_8_1740001	chr3L_1740001	RAL-440
901	chr3L	2108237	2108250	chr3L	2113459	2113468	copia	4	5219	1.0	1.5	1.2	1.8	5231	chr3L	2108237	intron	sls -	chr3L	2110852	intron	sls -	chr3L	2113468	intron	sls -	chr3L_4_2110001	chr3L_2110001	RAL-440
907	chr3L	2447487	2447505	chr3L	2456663	2456670	roo	5	9170	10.5	3.0	6.8	0.6	9183	chr3L	2447487	intron	CG45186 +	chr3L	2452078	intron	CG45186 +	chr3L	2456670	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-440
908	chr3L	2447507	2447536	chr3L	2456662	2456692	roo	7	9159	3.5	3.0	3.2	1.7	9185	chr3L	2447507	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-440
922	chr3L	2927822	2927872	chr3L	2936118	2936154	Tirant	8	8290	0.5	1.0	0.8	4.4	8332	chr3L	2927822	intron	Shab +	chr3L	2931988	intron	Shab +	chr3L	2936154	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-440
925	chr3L	3281443	3281454	chr3L	3281944	3281966	Doc	4	508	5.0	8.5	6.8	0.5	523	chr3L	3281443	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281966	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-440
926	chr3L	3281458	3281478	chr3L	3281939	3281941	Doc	10	491	2.5	8.5	5.5	1.5	483	chr3L	3281458	intron	CG12017 +	chr3L	3281700	intron	CG12017 +	chr3L	3281941	intron	CG12017 +	chr3L_10_3280001	chr3L_3280001	RAL-440
932	chr3L	3475082	3475093	chr3L	3475530	3475557	jockey	5	457	1.5	6.0	3.8	1.0	475	chr3L	3475082	intron	CG42324 +	chr3L	3475320	intron	CG42324 +	chr3L	3475557	intron	CG42324 +	chr3L_5_3475001	chr3L_3475001	RAL-440
939	chr3L	3601281	3601331	chr3L	3606612	3606661	copia	12	5325	2.5	3.5	3.0	3.0	5380	chr3L	3601281	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606661	intron	Eip63E +	chr3L_12_3600001	chr3L_3600001	RAL-440
945	chr3L	3833727	3833752	chr3L	3833984	3834013	pogo	4	256	5.5	1.5	3.5	0.9	286	chr3L	3833727	intron	enc +	chr3L	3833870	intron	enc +	chr3L	3834013	intron	enc +	chr3L_4_3830001	chr3L_3830001	RAL-440
949	chr3L	4328735	4328756	chr3L	4336251	4336273	412	7	7514	3.5	3.0	3.2	1.7	7538	chr3L	4328735	intron	Cip4 -	chr3L	4332504	intron	Cip4 -	chr3L	4336273	exon	Cip4 -	chr3L_7_4330001	chr3L_4330001	RAL-440
955	chr3L	4901108	4901160	chr3L	4907315	4907340	diver	11	6198	4.5	1.0	2.8	2.9	6232	chr3L	4901108	intergenic	CG13704 +	chr3L	4904224	intergenic	not near genes	chr3L	4907340	intergenic	not near genes	chr3L_11_4900001	chr3L_4900001	RAL-440
957	chr3L	5034149	5034186	chr3L	5043309	5043352	roo	10	9160	2.0	1.0	1.5	4.0	9203	chr3L	5034149	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043352	intron	Con -	chr3L_10_5035001	chr3L_5035001	RAL-440
958	chr3L	5045438	5045449	chr3L	5050239	5050245	Doc	5	4799	5.5	4.5	5.0	0.8	4807	chr3L	5045438	intron	Con -	chr3L	5047842	intron	Con -	chr3L	5050245	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-440
959	chr3L	5045451	5045466	chr3L	5050236	5050267	Doc	4	4794	5.0	4.0	4.5	0.7	4816	chr3L	5045451	intron	Con -	chr3L	5047859	intron	Con -	chr3L	5050267	intron	Con -	chr3L_4_5045001	chr3L_5045001	RAL-440
964	chr3L	5299139	5299158	chr3L	5306595	5306614	Quasimodo	4	7456	6.5	2.5	4.5	0.7	7475	chr3L	5299139	intergenic	not near genes	chr3L	5302876	intergenic	not near genes	chr3L	5306614	intergenic	not near genes	chr3L_4_5300001	chr3L_5300001	RAL-440
970	chr3L	5910026	5910056	chr3L	5910275	5910313	pogo	12	252	5.5	7.5	6.5	1.6	287	chr3L	5910026	intron	CG13288 +	chr3L	5910170	intron	CG13288 +	chr3L	5910313	intron	CG13288 +	chr3L_12_5910001	chr3L_5910001	RAL-440
972	chr3L	6001683	6001713	chr3L	6004391	6004427	jockey	8	2716	5.5	5.0	5.2	1.3	2744	chr3L	6001683	intron	PVRAP +	chr3L	6003055	intron	PVRAP +	chr3L	6004427	intron	PVRAP +	chr3L_8_6000001	chr3L_6000001	RAL-440
974	chr3L	6220908	6220936	chr3L	6230066	6230101	roo	12	9164	11.0	7.0	9.0	1.2	9193	chr3L	6220908	5` UTR	pncr008:3L +	chr3L	6225504	intergenic	not near genes	chr3L	6230101	intergenic	not near genes	chr3L_12_6225001	chr3L_6225001	RAL-440
975	chr3L	6334988	6335042	chr3L	6335479	6335525	297	9	485	1.0	4.5	2.8	2.4	537	chr3L	6334988	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335525	intron	CG13300 -	chr3L_9_6335001	chr3L_6335001	RAL-440
976	chr3L	6405651	6405687	chr3L	6432125	6432159	roo	7	26477	3.0	1.5	2.2	2.2	26508	chr3L	6405651	intron	CG42747 +	chr3L	6418905	intron	CG42747 +	chr3L	6432159	intron	CG42747 +	chr3L_7_6415001	chr3L_6415001	RAL-440
980	chr3L	6855915	6855948	chr3L	6860718	6860733	Doc	7	4794	2.5	2.0	2.2	2.2	4818	chr3L	6855915	intergenic	not near genes	chr3L	6858324	intergenic	not near genes	chr3L	6860733	intergenic	not near genes	chr3L_7_6855001	chr3L_6855001	RAL-440
982	chr3L	6887532	6887548	chr3L	6895023	6895043	roo	4	7497	3.5	3.0	3.2	1.0	7511	chr3L	6887532	intergenic	not near genes	chr3L	6891288	intergenic	not near genes	chr3L	6895043	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	RAL-440
986	chr3L	6994892	6994914	chr3L	6995501	6995539	BS	4	624	0.5	1.0	0.8	2.2	647	chr3L	6994892	intergenic	bin +	chr3L	6995216	intergenic	not near genes	chr3L	6995539	intergenic	not near genes	chr3L_4_6995001	chr3L_6995001	RAL-440
990	chr3L	7129933	7129969	chr3L	7130145	7130168	BS	5	207	0.0	3.0	1.5	2.0	235	chr3L	7129933	intergenic	CG15829 +	chr3L	7130050	intergenic	CG15829 +	chr3L	7130168	intergenic	CG15829 +	chr3L_5_7130001	chr3L_7130001	RAL-440
994	chr3L	7377308	7377344	chr3L	7380422	7380445	297	8	3113	4.5	7.0	5.8	1.2	3137	chr3L	7377308	intron	SMSr -	chr3L	7378876	intron	SMSr -	chr3L	7380445	intron	SMSr -	chr3L_8_7375001	chr3L_7375001	RAL-440
997	chr3L	7498748	7498789	chr3L	7503544	7503577	F-element	5	4794	1.5	2.5	2.0	1.7	4829	chr3L	7498748	5` UTR	CG8539 -	chr3L	7501162	intergenic	not near genes	chr3L	7503577	intergenic	not near genes	chr3L_5_7500001	chr3L_7500001	RAL-440
1002	chr3L	7793708	7793744	chr3L	7800767	7800798	297	14	7065	4.0	4.5	4.2	2.7	7090	chr3L	7793708	intron	CG32369 -	chr3L	7797253	intron	CG32369 -	chr3L	7800798	intron	CG32369 -	chr3L_14_7795001	chr3L_7795001	RAL-440
1007	chr3L	7886502	7886542	chr3L	7889032	7889039	Stalker4	9	2528	1.0	2.0	1.5	3.6	2537	chr3L	7886502	intron	CG32365 +	chr3L	7887770	intron	CG32365 +	chr3L	7889039	intron	CG32365 +	chr3L_9_7885001	chr3L_7885001	RAL-440
1008	chr3L	7916817	7916862	chr3L	7926008	7926048	roo	6	9189	2.5	2.0	2.2	1.9	9231	chr3L	7916817	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926048	3` UTR	syd -	chr3L_6_7920001	chr3L_7920001	RAL-440
1014	chr3L	8233577	8233593	chr3L	8238855	8238867	Rt1a	5	5272	1.0	10.0	5.5	0.8	5290	chr3L	8233577	intron	CG7213 -	chr3L	8236222	intron	CG7213 -	chr3L	8238867	intron,intron	CG7213 -,Dscam4 +	chr3L_5_8235001	chr3L_8235001	RAL-440
1020	chr3L	8498297	8498327	chr3L	8505771	8505801	blood	5	7478	0.0	7.5	3.8	1.0	7504	chr3L	8498297	intron	CG43163 -	chr3L	8502049	intron	CG43163 -	chr3L	8505801	intron	CG43163 -	chr3L_5_8500001	chr3L_8500001	RAL-440
1029	chr3L	9076923	9076956	chr3L	9084488	9084518	412	9	7568	6.5	5.5	6.0	1.3	7595	chr3L	9076923	exon	Tequila +	chr3L	9080720	intron	Tequila +	chr3L	9084518	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	RAL-440
1030	chr3L	9130562	9130582	chr3L	9134321	9134324	412	4	3758	6.0	5.5	5.8	0.6	3762	chr3L	9130562	intergenic	bol -	chr3L	9132443	intergenic	not near genes	chr3L	9134324	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-440
1031	chr3L	9164677	9164714	chr3L	9166164	9166200	hobo	13	1480	8.0	1.0	4.5	2.4	1523	chr3L	9164677	intron	Rdl -	chr3L	9165438	intron	Rdl -	chr3L	9166200	intron	Rdl -	chr3L_13_9165001	chr3L_9165001	RAL-440
1033	chr3L	9443499	9443540	chr3L	9445300	9445305	S-element	7	1794	3.0	1.0	2.0	2.3	1806	chr3L	9443499	intron	CG33926 +	chr3L	9444402	intron	CG33926 +	chr3L	9445305	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	RAL-440
1035	chr3L	9501696	9501731	chr3L	9502188	9502237	roo	8	500	3.0	2.0	2.5	2.3	541	chr3L	9501696	intron	path -	chr3L	9501966	intron	path -	chr3L	9502237	intron	path -	chr3L_8_9500001	chr3L_9500001	RAL-440
1037	chr3L	9571900	9571906	chr3L	9572253	9572272	jockey	5	363	8.5	3.5	6.0	0.7	372	chr3L	9571900	intron	CG42673 +	chr3L	9572086	intron	CG42673 +	chr3L	9572272	intron	CG42673 +	chr3L_5_9570001	chr3L_9570001	RAL-440
1038	chr3L	9571908	9571931	chr3L	9572252	9572293	jockey	4	357	4.5	3.5	4.0	0.8	385	chr3L	9571908	intron	CG42673 +	chr3L	9572100	intron	CG42673 +	chr3L	9572293	intron	CG42673 +	chr3L_4_9570001	chr3L_9570001	RAL-440
1039	chr3L	9575922	9575938	chr3L	9580990	9581000	jockey	5	5080	8.5	9.0	8.8	0.5	5078	chr3L	9575922	intron	CG42673 +	chr3L	9578461	intron	CG42673 +	chr3L	9581000	intron	CG42673 +	chr3L_5_9575001	chr3L_9575001	RAL-440
1044	chr3L	9929677	9929700	chr3L	9938459	9938493	roo	6	8786	3.0	6.0	4.5	1.1	8816	chr3L	9929677	intron	CG34356 +	chr3L	9934085	intron	CG34356 +	chr3L	9938493	intron	CG34356 +	chr3L_6_9930001	chr3L_9930001	RAL-440
1054	chr3L	10414929	10414971	chr3L	10417315	10417361	Doc	6	2381	0.5	4.0	2.2	1.9	2432	chr3L	10414929	intergenic	CG12362 +	chr3L	10416145	intergenic	not near genes	chr3L	10417361	intergenic	not near genes	chr3L_6_10415001	chr3L_10415001	RAL-440
1069	chr3L	11087064	11087082	chr3L	11088858	11088875	S-element	7	1797	0.5	2.5	1.5	2.8	1811	chr3L	11087064	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088875	intron	JIL-1 -	chr3L_7_11085001	chr3L_11085001	RAL-440
1070	chr3L	11105279	11105303	chr3L	11107001	11107027	X-element	6	1728	2.0	1.5	1.8	2.1	1748	chr3L	11105279	intergenic	not near genes	chr3L	11106153	intergenic	not near genes	chr3L	11107027	3` UTR	CG32073 -	chr3L_6_11105001	chr3L_11105001	RAL-440
1075	chr3L	11264458	11264494	chr3L	11271416	11271458	17.6	6	6962	2.5	1.0	1.8	2.1	7000	chr3L	11264458	intergenic	not near genes	chr3L	11267958	intergenic	not near genes	chr3L	11271458	intergenic	not near genes	chr3L_6_11265001	chr3L_11265001	RAL-440
1076	chr3L	11277455	11277477	chr3L	11278455	11278468	Rt1a	5	1003	0.0	2.5	1.2	2.3	1013	chr3L	11277455	intergenic	not near genes	chr3L	11277962	intergenic	not near genes	chr3L	11278468	intergenic	not near genes	chr3L_5_11275001	chr3L_11275001	RAL-440
1078	chr3L	11329679	11329697	chr3L	11332895	11332900	jockey	4	3212	7.0	2.5	4.8	0.7	3221	chr3L	11329679	intergenic	not near genes	chr3L	11331290	intergenic	not near genes	chr3L	11332900	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-440
1079	chr3L	11329704	11329728	chr3L	11332894	11332925	jockey	5	3198	4.5	2.0	3.2	1.2	3221	chr3L	11329704	intergenic	not near genes	chr3L	11331314	intergenic	not near genes	chr3L	11332925	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-440
1089	chr3L	11723071	11723114	chr3L	11727876	11727923	Doc	12	4808	4.0	3.0	3.5	2.7	4852	chr3L	11723071	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727923	3` UTR	Bmcp +	chr3L_12_11725001	chr3L_11725001	RAL-440
1127	chr3L	12874928	12874956	chr3L	12877217	12877268	jockey	7	2300	2.5	3.5	3.0	1.8	2340	chr3L	12874928	intergenic	not near genes	chr3L	12876098	intergenic	not near genes	chr3L	12877268	intergenic	not near genes	chr3L_7_12875001	chr3L_12875001	RAL-440
1129	chr3L	12919257	12919303	chr3L	12924761	12924770	Rt1c	6	5491	6.5	4.5	5.5	0.9	5513	chr3L	12919257	intergenic	not near genes	chr3L	12922014	intergenic	not near genes	chr3L	12924770	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-440
1132	chr3L	12957783	12957817	chr3L	12962266	12962309	copia	17	4491	4.0	4.0	4.0	3.4	4526	chr3L	12957783	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962309	intergenic	not near genes	chr3L_17_12960001	chr3L_12960001	RAL-440
1146	chr3L	13804533	13804577	chr3L	13822839	13822855	roo	12	18299	2.5	6.5	4.5	2.2	18322	chr3L	13804533	intergenic	not near genes	chr3L	13813694	intergenic	not near genes	chr3L	13822855	intergenic	not near genes	chr3L_12_13810001	chr3L_13810001	RAL-440
1154	chr3L	14245572	14245586	chr3L	14245674	14245700	1360	13	104	5.0	3.0	4.0	2.6	128	chr3L	14245572	3` UTR	CR44561 -	chr3L	14245636	3` UTR	CR44561 -	chr3L	14245700	intergenic	CR44561 -,CR44560 +	chr3L_13_14245001	chr3L_14245001	RAL-440
1155	chr3L	14267367	14267388	chr3L	14271811	14271849	F-element	5	4450	2.5	4.5	3.5	1.1	4482	chr3L	14267367	intergenic	not near genes	chr3L	14269608	intergenic	not near genes	chr3L	14271849	intergenic	not near genes	chr3L_5_14265001	chr3L_14265001	RAL-440
1157	chr3L	14295978	14296014	chr3L	14296470	14296504	roo	8	492	3.0	4.5	3.8	1.7	526	chr3L	14295978	intron	fz +	chr3L	14296241	intron	fz +	chr3L	14296504	intron	fz +	chr3L_8_14295001	chr3L_14295001	RAL-440
1163	chr3L	14468429	14468478	chr3L	14473654	14473700	copia	7	5223	3.0	1.0	2.0	2.3	5271	chr3L	14468429	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473700	intron	bbg -	chr3L_7_14470001	chr3L_14470001	RAL-440
1172	chr3L	14954357	14954394	chr3L	14956034	14956083	transib2	4	1681	2.0	1.0	1.5	1.6	1726	chr3L	14954357	intergenic	not near genes	chr3L	14955220	intergenic	not near genes	chr3L	14956083	intergenic	not near genes	chr3L_4_14955001	chr3L_14955001	RAL-440
1175	chr3L	15085054	15085082	chr3L	15086215	15086267	1360	6	1167	1.5	3.5	2.5	1.7	1213	chr3L	15085054	intron	cp309 -	chr3L	15085660	intron	cp309 -	chr3L	15086267	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	RAL-440
1177	chr3L	15295763	15295801	chr3L	15298620	15298636	gypsy5	4	2850	0.5	2.0	1.2	1.8	2873	chr3L	15295763	intergenic	not near genes	chr3L	15297200	intergenic	not near genes	chr3L	15298636	intergenic	Best4 +	chr3L_4_15295001	chr3L_15295001	RAL-440
1182	chr3L	15423740	15423769	chr3L	15426604	15426619	opus	5	2861	4.0	3.5	3.8	1.0	2879	chr3L	15423740	intergenic	not near genes	chr3L	15425180	intergenic	not near genes	chr3L	15426619	intergenic	not near genes	chr3L_5_15425001	chr3L_15425001	RAL-440
1193	chr3L	15929181	15929226	chr3L	15938342	15938393	roo	6	9163	4.0	2.0	3.0	1.5	9212	chr3L	15929181	intron	Pka-C3 -	chr3L	15933787	intron	Pka-C3 -	chr3L	15938393	intron	Pka-C3 -	chr3L_6_15930001	chr3L_15930001	RAL-440
1200	chr3L	16184094	16184135	chr3L	16188927	16188950	X-element	12	4831	4.5	4.0	4.2	2.3	4856	chr3L	16184094	intergenic	not near genes	chr3L	16186522	intergenic	not near genes	chr3L	16188950	intergenic	not near genes	chr3L_12_16185001	chr3L_16185001	RAL-440
1209	chr3L	16493959	16493980	chr3L	16494496	16494499	jockey	6	534	10.5	6.5	8.5	0.6	540	chr3L	16493959	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494229	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494499	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_6_16490001	chr3L_16490001	RAL-440
1210	chr3L	16493984	16494012	chr3L	16494493	16494523	jockey	13	515	3.5	6.5	5.0	2.2	539	chr3L	16493984	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494254	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494523	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_13_16490001	chr3L_16490001	RAL-440
1214	chr3L	16616512	16616542	chr3L	16621845	16621882	297	9	5333	2.5	3.5	3.0	2.2	5370	chr3L	16616512	3` UTR	Abl -	chr3L	16619197	3` UTR	Abl -	chr3L	16621882	3` UTR	Abl -	chr3L_9_16615001	chr3L_16615001	RAL-440
1229	chr3L	16945736	16945749	chr3L	16954883	16954892	roo	5	9148	4.0	9.5	6.8	0.6	9156	chr3L	16945736	exon	Obp73a +	chr3L	16950314	intergenic	not near genes	chr3L	16954892	5` UTR	Nc73EF +	chr3L_5_16950001	chr3L_16950001	RAL-440
1232	chr3L	17034924	17034954	chr3L	17035128	17035156	G2	6	204	2.0	0.5	1.2	2.7	232	chr3L	17034924	intergenic	not near genes	chr3L	17035040	intergenic	not near genes	chr3L	17035156	intergenic	not near genes	chr3L_6_17035001	chr3L_17035001	RAL-440
1233	chr3L	17084986	17085029	chr3L	17094155	17094198	roo	12	9163	7.5	4.0	5.8	1.8	9212	chr3L	17084986	intron	Rbp6 -	chr3L	17089592	intron	Rbp6 -	chr3L	17094198	intron	Rbp6 -	chr3L_12_17085001	chr3L_17085001	RAL-440
1239	chr3L	17516974	17517002	chr3L	17524536	17524559	412	7	7556	5.5	2.5	4.0	1.4	7585	chr3L	17516974	intron	CG7564 +	chr3L	17520766	intron	CG7564 +	chr3L	17524559	3` UTR	CG7564 +	chr3L_7_17520001	chr3L_17520001	RAL-440
1242	chr3L	17730848	17730882	chr3L	17738184	17738209	mdg1	8	7337	2.0	3.0	2.5	2.3	7361	chr3L	17730848	intron	Ccn +	chr3L	17734528	intron	Ccn +	chr3L	17738209	intron	Ccn +	chr3L_8_17730001	chr3L_17730001	RAL-440
1246	chr3L	17799795	17799842	chr3L	17801602	17801644	S-element	6	1802	2.5	3.0	2.8	1.6	1849	chr3L	17799795	intron	NUCB1 -	chr3L	17800720	intron	NUCB1 -	chr3L	17801644	intron	NUCB1 -	chr3L_6_17800001	chr3L_17800001	RAL-440
1250	chr3L	17918369	17918401	chr3L	17921181	17921220	opus	5	2813	2.0	1.5	1.8	1.8	2851	chr3L	17918369	intergenic	not near genes	chr3L	17919794	intergenic	not near genes	chr3L	17921220	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	RAL-440
1254	chr3L	18047711	18047738	chr3L	18056766	18056815	roo	12	9070	1.5	3.5	2.5	3.4	9104	chr3L	18047711	intron	Eip75B -	chr3L	18052263	intron	Eip75B -	chr3L	18056815	intron	Eip75B -	chr3L_12_18050001	chr3L_18050001	RAL-440
1273	chr3L	18528622	18528656	chr3L	18537786	18537826	roo	10	9174	3.0	0.5	1.8	3.6	9204	chr3L	18528622	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537826	intergenic	not near genes	chr3L_10_18530001	chr3L_18530001	RAL-440
1278	chr3L	18772389	18772439	chr3L	18781090	18781140	roo	16	8692	4.0	4.5	4.2	3.1	8751	chr3L	18772389	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781140	intron	ftz-f1 -	chr3L_16_18775001	chr3L_18775001	RAL-440
1282	chr3L	18833773	18833798	chr3L	18834944	18834978	1360	9	1171	7.0	4.5	5.8	1.3	1205	chr3L	18833773	intron	Indy -	chr3L	18834376	intron	Indy -	chr3L	18834978	intron	Indy -	chr3L_9_18830001	chr3L_18830001	RAL-440
1289	chr3L	19008836	19008867	chr3L	19009183	19009215	jockey	10	352	4.0	3.5	3.8	2.1	379	chr3L	19008836	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009215	intron	nkd -	chr3L_10_19005001	chr3L_19005001	RAL-440
1290	chr3L	19008869	19008870	chr3L	19009178	19009194	jockey	4	324	3.0	3.5	3.2	1.0	325	chr3L	19008869	intron	nkd -	chr3L	19009032	intron	nkd -	chr3L	19009194	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-440
1292	chr3L	19115652	19115669	chr3L	19115815	19115825	BS	4	170	7.0	2.5	4.8	0.7	173	chr3L	19115652	intron	CG14082 -	chr3L	19115738	intron	CG14082 -	chr3L	19115825	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-440
1293	chr3L	19117020	19117072	chr3L	19124487	19124530	mdg1	12	7450	6.5	4.5	5.5	1.8	7510	chr3L	19117020	intron	CG14082 -	chr3L	19120775	intron	CG14082 -	chr3L	19124530	intron	CG14082 -	chr3L_12_19120001	chr3L_19120001	RAL-440
1296	chr3L	19208063	19208089	chr3L	19209444	19209460	Doc	6	1376	2.5	3.0	2.8	1.6	1397	chr3L	19208063	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209460	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-440
1307	chr3L	19820278	19820314	chr3L	19827847	19827876	412	5	7566	2.5	2.0	2.2	1.6	7598	chr3L	19820278	intron	Deaf1 +	chr3L	19824077	intron	Deaf1 +	chr3L	19827876	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	RAL-440
1308	chr3L	19848491	19848531	chr3L	19857697	19857702	roo	13	9198	8.0	7.0	7.5	1.5	9211	chr3L	19848491	intron	Papss +	chr3L	19853096	intron	Papss +	chr3L	19857702	intron	Papss +	chr3L_13_19850001	chr3L_19850001	RAL-440
1309	chr3L	19861833	19861852	chr3L	19863613	19863646	S-element	9	1790	2.5	1.5	2.0	3.0	1813	chr3L	19861833	5` UTR	CR45433 +	chr3L	19862740	intergenic	not near genes	chr3L	19863646	intergenic	not near genes	chr3L_9_19860001	chr3L_19860001	RAL-440
1319	chr3L	20113641	20113686	chr3L	20122917	20122960	roo	4	9275	0.5	3.5	2.0	1.3	9319	chr3L	20113641	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122960	intergenic	not near genes	chr3L_4_20115001	chr3L_20115001	RAL-440
1324	chr3L	20257312	20257361	chr3L	20258452	20258486	pogo	5	1133	5.5	9.0	7.2	0.6	1174	chr3L	20257312	intron	rdgC +	chr3L	20257899	intron	rdgC +	chr3L	20258486	intron	rdgC +	chr3L_5_20255001	chr3L_20255001	RAL-440
1328	chr3L	20476736	20476782	chr3L	20484355	20484401	springer	17	7612	4.5	6.5	5.5	2.6	7665	chr3L	20476736	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484401	3` UTR	ZnT77C -	chr3L_17_20480001	chr3L_20480001	RAL-440
1334	chr3L	21014907	21014942	chr3L	21023395	21023399	Tirant	6	8478	4.5	2.0	3.2	1.4	8492	chr3L	21014907	intron	skd -	chr3L	21019153	intron	skd -	chr3L	21023399	intron	skd -	chr3L_6_21015001	chr3L_21015001	RAL-440
1336	chr3L	21151845	21151866	chr3L	21156949	21156970	flea	4	5104	4.0	2.5	3.2	1.0	5125	chr3L	21151845	intron	Ac78C -	chr3L	21154408	intron	Ac78C -	chr3L	21156970	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-440
1337	chr3L	21151867	21151896	chr3L	21156946	21156975	flea	5	5092	2.0	2.0	2.0	1.7	5108	chr3L	21151867	intron	Ac78C -	chr3L	21154421	intron	Ac78C -	chr3L	21156975	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	RAL-440
1341	chr3L	21306140	21306179	chr3L	21315306	21315356	roo	9	9175	1.5	2.5	2.0	3.0	9216	chr3L	21306140	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310748	intron	Pc -	chr3L	21315356	3` UTR	Pc -	chr3L_9_21310001	chr3L_21310001	RAL-440
1347	chr3L	21501162	21501170	chr3L	21501276	21501277	1360	4	112	7.5	10.0	8.8	0.4	115	chr3L	21501162	intron	Glg1 -	chr3L	21501220	intron	Glg1 -	chr3L	21501277	intron	Glg1 -	chr3L_4_21500001	chr3L_21500001	RAL-440
1350	chr3L	21749334	21749350	chr3L	21754485	21754495	Doc	5	5152	2.5	3.5	3.0	1.2	5161	chr3L	21749334	intron	Syn1 -	chr3L	21751914	intron	Syn1 -	chr3L	21754495	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-440
1361	chr3L	22099669	22099702	chr3L	22105864	22105908	3S18	5	6193	2.0	3.0	2.5	1.4	6239	chr3L	22099669	intergenic	not near genes	chr3L	22102788	intergenic	not near genes	chr3L	22105908	intergenic	not near genes	chr3L_5_22100001	chr3L_22100001	RAL-440
1369	chr3L	22555751	22555776	chr3L	22563240	22563262	blood	5	7483	8.0	1.0	4.5	0.9	7511	chr3L	22555751	intergenic	not near genes	chr3L	22559506	intergenic	not near genes	chr3L	22563262	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-440
1371	chr3L	22617177	22617221	chr3L	22624643	22624677	blood	7	7461	3.0	4.0	3.5	1.6	7500	chr3L	22617177	intron	CG14459 -	chr3L	22620927	intron	CG14459 -	chr3L	22624677	intron	CG14459 -	chr3L_7_22620001	chr3L_22620001	RAL-440
1374	chr3L	22761386	22761408	chr3L	22766829	22766834	Ivk	5	5445	16.5	9.0	12.8	0.4	5448	chr3L	22761386	intron	SPoCk +	chr3L	22764110	intron	SPoCk +	chr3L	22766834	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-440
1378	chr3L	22865971	22866014	chr3L	22867113	22867162	Doc	14	1147	3.5	3.5	3.5	3.1	1191	chr3L	22865971	intron	CG33170 +	chr3L	22866566	intron	CG33170 +	chr3L	22867162	intron	CG33170 +	chr3L_14_22865001	chr3L_22865001	RAL-440
1385	chr3L	22989845	22989857	chr3L	22996838	22996842	297	5	6992	10.5	1.5	6.0	0.7	6997	chr3L	22989845	intergenic	not near genes	chr3L	22993344	intergenic	not near genes	chr3L	22996842	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	RAL-440
1386	chr3L	22989861	22989872	chr3L	22996834	22996851	297	7	6981	7.0	1.5	4.2	1.3	6990	chr3L	22989861	intergenic	not near genes	chr3L	22993356	intergenic	not near genes	chr3L	22996851	intergenic	not near genes	chr3L_7_22990001	chr3L_22990001	RAL-440
1390	chr3L	23665522	23665527	chr3L	23665624	23665637	gypsy8	7	108	31.5	26.5	29.0	0.2	115	chr3L	23665522	intron	AGO3 +	chr3L	23665580	intron	AGO3 +	chr3L	23665637	intron	AGO3 +	chr3L_7_23665001	chr3L_23665001	RAL-440
1393	chr3L	24021279	24021314	chr3L	24022441	24022451	1360	4	1160	5.0	6.5	5.8	0.6	1172	chr3L	24021279	intergenic	not near genes	chr3L	24021865	intergenic	not near genes	chr3L	24022451	intergenic	not near genes	chr3L_4_24020001	chr3L_24020001	RAL-440
1403	chr3L	25628503	25628528	chr3L	25633264	25633303	F-element	8	4777	3.5	2.0	2.8	2.1	4800	chr3L	25628503	intron	CG41343 -	chr3L	25630903	intron	CG41343 -	chr3L	25633303	intron	CG41343 -	chr3L_8_25630001	chr3L_25630001	RAL-440
1415	chr3R	4206063	4206098	chr3R	4211653	4211676	mdg3	8	5584	5.0	3.0	4.0	1.6	5613	chr3R	4206063	intron	CG14636 -	chr3R	4208870	intron	CG14636 -	chr3R	4211676	intron	CG14636 -	chr3R_8_4205001	chr3R_4205001	RAL-440
1416	chr3R	4366756	4366784	chr3R	4375138	4375186	roo	4	8394	2.0	2.5	2.2	1.2	8430	chr3R	4366756	3` UTR	CG1090 +	chr3R	4370971	intergenic	not near genes	chr3R	4375186	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	RAL-440
1417	chr3R	4408400	4408443	chr3R	4412714	4412739	Juan	12	4312	3.5	3.5	3.5	2.7	4339	chr3R	4408400	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412739	intron	CG32944 -	chr3R_12_4410001	chr3R_4410001	RAL-440
1418	chr3R	4538900	4538907	chr3R	4540154	4540170	1360	4	1268	2.0	4.0	3.0	1.0	1270	chr3R	4538900	intron	CG34357 -	chr3R	4539535	intron	CG34357 -	chr3R	4540170	intron	CG34357 -	chr3R_4_4535001	chr3R_4535001	RAL-440
1422	chr3R	4609531	4609582	chr3R	4610710	4610741	1360	19	1175	4.0	4.0	4.0	3.8	1210	chr3R	4609531	intergenic	not near genes	chr3R	4610136	intergenic	not near genes	chr3R	4610741	intergenic	not near genes	chr3R_19_4610001	chr3R_4610001	RAL-440
1425	chr3R	4683172	4683202	chr3R	4684940	4684956	S-element	4	1767	5.0	4.0	4.5	0.7	1784	chr3R	4683172	intron	CG43427 +	chr3R	4684064	intron	CG43427 +	chr3R	4684956	intron	CG43427 +	chr3R_4_4680001	chr3R_4680001	RAL-440
1426	chr3R	4753236	4753265	chr3R	4757550	4757587	F-element	5	4316	9.5	5.5	7.5	0.6	4351	chr3R	4753236	intron,intron	atms +,CG44098 -	chr3R	4755412	intron,intron	atms +,CG44098 -	chr3R	4757587	intron,exon	atms +,CG44098 -	chr3R_5_4755001	chr3R_4755001	RAL-440
1427	chr3R	4759710	4759746	chr3R	4761226	4761238	hopper2	6	1510	8.5	22.5	15.5	0.4	1528	chr3R	4759710	intron,intron	atms +,CG44098 -	chr3R	4760474	intron,intron	atms +,CG44098 -	chr3R	4761238	intron,intron	atms +,CG44098 -	chr3R_6_4760001	chr3R_4760001	RAL-440
1429	chr3R	4887481	4887511	chr3R	4894855	4894882	rover	5	7372	4.5	4.0	4.2	1.0	7401	chr3R	4887481	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894882	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-440
1435	chr3R	5045824	5045873	chr3R	5052945	5052995	HMS-Beagle	7	7115	2.5	2.5	2.5	2.0	7171	chr3R	5045824	3` UTR	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5052995	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-440
1436	chr3R	5067962	5068004	chr3R	5073498	5073538	mdg3	11	5530	9.5	8.0	8.8	1.1	5576	chr3R	5067962	intergenic	not near genes	chr3R	5070750	intergenic	not near genes	chr3R	5073538	intergenic	not near genes	chr3R_11_5070001	chr3R_5070001	RAL-440
1440	chr3R	5338381	5338425	chr3R	5343575	5343612	Rt1c	4	5193	5.0	6.5	5.8	0.6	5231	chr3R	5338381	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343612	intron	mtd -	chr3R_4_5340001	chr3R_5340001	RAL-440
1443	chr3R	5445940	5445985	chr3R	5452420	5452463	Burdock	7	6478	4.0	4.5	4.2	1.3	6523	chr3R	5445940	intron	CG14669 +	chr3R	5449202	intron	CG14669 +	chr3R	5452463	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-440
1447	chr3R	5746008	5746045	chr3R	5746264	5746287	pogo	6	250	2.5	6.0	4.2	1.2	279	chr3R	5746008	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-440
1448	chr3R	5746998	5747035	chr3R	5753204	5753237	diver	8	6202	5.0	4.0	4.5	1.5	6239	chr3R	5746998	intergenic	Madm +	chr3R	5750118	intergenic	not near genes	chr3R	5753237	intergenic	CG2091 -	chr3R_8_5750001	chr3R_5750001	RAL-440
1450	chr3R	5809104	5809133	chr3R	5809354	5809394	pogo	5	252	4.0	5.5	4.8	0.9	290	chr3R	5809104	3` UTR	CG11000 +	chr3R	5809249	3` UTR	CG11000 +	chr3R	5809394	3` UTR	CG11000 +	chr3R_5_5805001	chr3R_5805001	RAL-440
1451	chr3R	5822365	5822408	chr3R	5823544	5823580	1360	4	1178	13.0	15.0	14.0	0.3	1215	chr3R	5822365	3` UTR	CG2023 -	chr3R	5822972	3` UTR	CG2023 -	chr3R	5823580	3` UTR	CG2023 -	chr3R_4_5820001	chr3R_5820001	RAL-440
1457	chr3R	5927560	5927589	chr3R	5927801	5927828	pogo	11	249	4.0	4.5	4.2	2.1	268	chr3R	5927560	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927828	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-440
1461	chr3R	6158519	6158540	chr3R	6167096	6167143	Tirant	5	8585	5.5	3.0	4.2	1.0	8624	chr3R	6158519	intergenic	not near genes	chr3R	6162831	intergenic	not near genes	chr3R	6167143	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	RAL-440
1462	chr3R	6175158	6175173	chr3R	6182450	6182460	HMS-Beagle2	4	7289	2.0	2.0	2.0	1.3	7302	chr3R	6175158	intergenic	Osi1 +	chr3R	6178809	intron	CR45194 +	chr3R	6182460	intergenic	CR45194 +	chr3R_4_6175001	chr3R_6175001	RAL-440
1463	chr3R	6175181	6175195	chr3R	6182446	6182479	HMS-Beagle2	5	7276	0.5	2.0	1.2	2.3	7298	chr3R	6175181	intergenic	Osi1 +	chr3R	6178830	intron	CR45194 +	chr3R	6182479	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	RAL-440
1464	chr3R	6206286	6206306	chr3R	6206510	6206513	BS	4	224	4.5	5.5	5.0	0.7	227	chr3R	6206286	exon	Osi24 +	chr3R	6206400	intron	Osi24 +	chr3R	6206513	intron	Osi24 +	chr3R_4_6205001	chr3R_6205001	RAL-440
1465	chr3R	6206309	6206316	chr3R	6206499	6206501	BS	4	198	4.0	4.5	4.2	0.8	192	chr3R	6206309	exon	Osi24 +	chr3R	6206405	intron	Osi24 +	chr3R	6206501	intron	Osi24 +	chr3R_4_6205001	chr3R_6205001	RAL-440
1475	chr3R	6737518	6737527	chr3R	6739299	6739334	Doc	6	1796	1.0	3.5	2.2	1.9	1816	chr3R	6737518	intron	pb -	chr3R	6738426	intron	pb -	chr3R	6739334	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-440
1503	chr3R	7694558	7694610	chr3R	7713637	7713682	invader3	8	19075	0.0	2.5	1.2	3.6	19124	chr3R	7694558	3` UTR	Nlg1 +	chr3R	7704120	intergenic	not near genes	chr3R	7713682	intergenic	not near genes	chr3R_8_7700001	chr3R_7700001	RAL-440
1505	chr3R	7729450	7729495	chr3R	7737407	7737438	Stalker2	18	7947	6.0	4.5	5.2	2.9	7988	chr3R	7729450	intergenic	not near genes	chr3R	7733444	intergenic	not near genes	chr3R	7737438	intergenic	not near genes	chr3R_18_7730001	chr3R_7730001	RAL-440
1508	chr3R	7849652	7849673	chr3R	7850824	7850852	1360	7	1177	2.0	8.0	5.0	1.2	1200	chr3R	7849652	intron	CG34384 +	chr3R	7850252	intron	CG34384 +	chr3R	7850852	intron	CG34384 +	chr3R_7_7850001	chr3R_7850001	RAL-440
1514	chr3R	7973303	7973343	chr3R	7974377	7974403	1360	5	1076	2.0	2.5	2.2	1.6	1100	chr3R	7973303	intergenic	not near genes	chr3R	7973853	intergenic	not near genes	chr3R	7974403	intergenic	CD98hc -	chr3R_5_7970001	chr3R_7970001	RAL-440
1516	chr3R	8094397	8094434	chr3R	8099720	8099759	Transpac	8	5318	4.5	4.5	4.5	1.5	5362	chr3R	8094397	intron	CG7900 +	chr3R	8097078	intron	CG7900 +	chr3R	8099759	intron	CG7900 +	chr3R_8_8095001	chr3R_8095001	RAL-440
1517	chr3R	8101769	8101776	chr3R	8104853	8104880	G2	4	3096	6.5	2.0	4.2	0.8	3111	chr3R	8101769	exon	CG7900 +	chr3R	8103324	intron	CG7900 +	chr3R	8104880	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-440
1523	chr3R	8402996	8403008	chr3R	8412179	8412185	roo	4	9182	5.5	6.0	5.8	0.6	9189	chr3R	8402996	intron	CG45263 -	chr3R	8407590	intron	CG45263 -	chr3R	8412185	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-440
1524	chr3R	8403012	8403039	chr3R	8412176	8412207	roo	5	9174	3.0	5.5	4.2	1.0	9195	chr3R	8403012	intron	CG45263 -	chr3R	8407610	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-440
1527	chr3R	8570458	8570483	chr3R	8575114	8575130	HMS-Beagle	4	4652	6.0	3.0	4.5	0.7	4672	chr3R	8570458	intergenic	not near genes	chr3R	8572794	intergenic	not near genes	chr3R	8575130	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-440
1530	chr3R	8601753	8601798	chr3R	8610920	8610951	roo	9	9155	5.5	1.5	3.5	2.0	9198	chr3R	8601753	intron	5-HT2B +	chr3R	8606352	intron	5-HT2B +	chr3R	8610951	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-440
1533	chr3R	8707355	8707387	chr3R	8709805	8709817	jockey	4	2446	2.0	5.5	3.8	0.8	2462	chr3R	8707355	intergenic	not near genes	chr3R	8708586	intergenic	not near genes	chr3R	8709817	intergenic	not near genes	chr3R_4_8705001	chr3R_8705001	RAL-440
1541	chr3R	8894865	8894902	chr3R	8896026	8896052	1360	11	1166	1.5	4.0	2.8	2.9	1187	chr3R	8894865	intron	pyd -	chr3R	8895458	intron	pyd -	chr3R	8896052	intron	pyd -	chr3R_11_8895001	chr3R_8895001	RAL-440
1554	chr3R	9278785	9278808	chr3R	9284046	9284073	Rt1a	10	5269	5.5	8.5	7.0	1.2	5288	chr3R	9278785	intergenic	not near genes	chr3R	9281429	intergenic	not near genes	chr3R	9284073	intergenic	not near genes	chr3R_10_9280001	chr3R_9280001	RAL-440
1556	chr3R	9319574	9319602	chr3R	9320005	9320048	jockey	10	447	2.5	4.5	3.5	2.2	474	chr3R	9319574	intron	CG8861 -	chr3R	9319811	intron	CG8861 -	chr3R	9320048	intron	CG8861 -	chr3R_10_9315001	chr3R_9315001	RAL-440
1559	chr3R	9361805	9361847	chr3R	9362065	9362093	pogo	5	254	1.0	3.5	2.2	1.6	288	chr3R	9361805	3` UTR	CG45050 +	chr3R	9361949	3` UTR	CG45050 +	chr3R	9362093	3` UTR	CG45050 +	chr3R_5_9360001	chr3R_9360001	RAL-440
1565	chr3R	9699966	9700001	chr3R	9700061	9700095	1360	5	97	10.0	14.5	12.2	0.4	129	chr3R	9699966	intron	Unc-115a -	chr3R	9700030	intron	Unc-115a -	chr3R	9700095	intron	Unc-115a -	chr3R_5_9700001	chr3R_9700001	RAL-440
1571	chr3R	10231777	10231809	chr3R	10237367	10237372	mdg3	9	5579	1.5	2.0	1.8	3.2	5595	chr3R	10231777	intron	CG42795 +	chr3R	10234574	intron	CG42795 +	chr3R	10237372	intron	CG42795 +	chr3R_9_10230001	chr3R_10230001	RAL-440
1602	chr3R	11841059	11841093	chr3R	11846252	11846279	BS	14	5196	2.0	2.0	2.0	4.7	5220	chr3R	11841059	intron	CG6959 -	chr3R	11843669	intron	CG6959 -	chr3R	11846279	intron	CG6959 -	chr3R_14_11840001	chr3R_11840001	RAL-440
1607	chr3R	12022864	12022916	chr3R	12025061	12025111	pogo	16	2193	2.5	3.0	2.8	4.2	2247	chr3R	12022864	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025111	intergenic	not near genes	chr3R_16_12020001	chr3R_12020001	RAL-440
1629	chr3R	12920131	12920181	chr3R	12925354	12925371	copia	11	5209	3.0	5.5	4.2	2.1	5240	chr3R	12920131	intron	beat-Vb +	chr3R	12922751	intron	beat-Vb +	chr3R	12925371	intron	beat-Vb +	chr3R_11_12920001	chr3R_12920001	RAL-440
1635	chr3R	13135820	13135856	chr3R	13138008	13138051	pogo	9	2192	4.0	5.0	4.5	1.6	2231	chr3R	13135820	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136936	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138051	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13135001	chr3R_13135001	RAL-440
1636	chr3R	13143041	13143066	chr3R	13148621	13148623	mdg3	5	5577	2.5	6.5	4.5	0.9	5582	chr3R	13143041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145832	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148623	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-440
1644	chr3R	13517204	13517252	chr3R	13520041	13520048	jockey	4	2821	3.5	0.0	1.8	1.4	2844	chr3R	13517204	intergenic	not near genes	chr3R	13518626	intergenic	not near genes	chr3R	13520048	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	RAL-440
1654	chr3R	14021643	14021658	chr3R	14023465	14023498	S-element	4	1834	5.5	4.5	5.0	0.7	1855	chr3R	14021643	intron	rdx -	chr3R	14022570	intron	rdx -	chr3R	14023498	intron	rdx -	chr3R_4_14020001	chr3R_14020001	RAL-440
1660	chr3R	14246400	14246418	chr3R	14247895	14247917	jockey	5	1498	4.0	6.0	5.0	0.8	1517	chr3R	14246400	intergenic	not near genes	chr3R	14247158	intergenic	not near genes	chr3R	14247917	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-440
1671	chr3R	15041420	15041441	chr3R	15045193	15045212	Doc	4	3772	0.5	4.5	2.5	1.1	3792	chr3R	15041420	intergenic	not near genes	chr3R	15043316	intergenic	not near genes	chr3R	15045212	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	RAL-440
1672	chr3R	15079805	15079836	chr3R	15080049	15080060	pogo	8	248	3.5	1.5	2.5	2.3	255	chr3R	15079805	3` UTR	CG6966 -	chr3R	15079932	3` UTR	CG6966 -	chr3R	15080060	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RAL-440
1675	chr3R	15102482	15102526	chr3R	15109760	15109796	412	6	7274	2.0	3.5	2.8	1.6	7314	chr3R	15102482	intron	CG42788 -	chr3R	15106139	intron	CG42788 -	chr3R	15109796	intron	CG42788 -	chr3R_6_15105001	chr3R_15105001	RAL-440
1679	chr3R	15132055	15132076	chr3R	15135119	15135147	Juan	7	3069	5.5	4.5	5.0	1.2	3092	chr3R	15132055	intergenic	CG42788 -	chr3R	15133601	intergenic	not near genes	chr3R	15135147	3` UTR	CG6912 -	chr3R_7_15130001	chr3R_15130001	RAL-440
1681	chr3R	15162525	15162574	chr3R	15167312	15167353	F-element	9	4776	3.5	1.0	2.2	2.8	4828	chr3R	15162525	intron	Gyc88E +	chr3R	15164939	intron	Gyc88E +	chr3R	15167353	intron	Gyc88E +	chr3R_9_15160001	chr3R_15160001	RAL-440
1690	chr3R	15601165	15601196	chr3R	15608687	15608738	412	10	7530	5.5	2.5	4.0	2.0	7573	chr3R	15601165	intergenic	not near genes	chr3R	15604952	intergenic	not near genes	chr3R	15608738	intergenic	not near genes	chr3R_10_15600001	chr3R_15600001	RAL-440
1702	chr3R	16189393	16189439	chr3R	16189813	16189860	invader4	4	418	8.0	8.0	8.0	0.4	467	chr3R	16189393	intron	sra +	chr3R	16189626	intron	sra +	chr3R	16189860	intron	sra +	chr3R_4_16185001	chr3R_16185001	RAL-440
1710	chr3R	16756325	16756351	chr3R	16762520	16762521	diver	4	6187	3.0	3.5	3.2	1.0	6196	chr3R	16756325	intron	bxd -	chr3R	16759423	intron	bxd -	chr3R	16762521	intron	bxd -	chr3R_4_16755001	chr3R_16755001	RAL-440
1719	chr3R	17294673	17294704	chr3R	17295097	17295128	BS	13	435	2.0	3.5	2.8	3.4	455	chr3R	17294673	intergenic	not near genes	chr3R	17294900	intergenic	not near genes	chr3R	17295128	intergenic	not near genes	chr3R_13_17290001	chr3R_17290001	RAL-440
1739	chr3R	17925850	17925880	chr3R	17927334	17927367	hobo	7	1479	5.5	7.5	6.5	0.9	1517	chr3R	17925850	intron	cpo +	chr3R	17926608	intron	cpo +	chr3R	17927367	intron	cpo +	chr3R_7_17925001	chr3R_17925001	RAL-440
1740	chr3R	18061576	18061605	chr3R	18063158	18063190	F-element	5	1577	2.0	2.5	2.2	1.6	1614	chr3R	18061576	intergenic	not near genes	chr3R	18062383	intergenic	not near genes	chr3R	18063190	intergenic	not near genes	chr3R_5_18060001	chr3R_18060001	RAL-440
1750	chr3R	18606493	18606528	chr3R	18610737	18610770	F-element	6	4239	3.5	5.0	4.2	1.2	4277	chr3R	18606493	intron,intron	qin +,CG14304 -	chr3R	18608632	intron,intron	qin +,CG14304 -	chr3R	18610770	intron,intron	qin +,CG14304 -	chr3R_6_18605001	chr3R_18605001	RAL-440
1761	chr3R	19136406	19136411	chr3R	19139785	19139806	Bari1	5	3381	32.5	19.0	25.8	0.2	3400	chr3R	19136406	exon	Cyp12a4 +	chr3R	19138106	intergenic	not near genes	chr3R	19139806	3` UTR	Ppcs -	chr3R_5_19135001	chr3R_19135001	RAL-440
1774	chr3R	20109545	20109567	chr3R	20114755	20114792	copia	9	5220	1.0	6.0	3.5	2.0	5247	chr3R	20109545	intergenic	not near genes	chr3R	20112168	intergenic	not near genes	chr3R	20114792	intergenic	CG10887 +	chr3R_9_20110001	chr3R_20110001	RAL-440
1775	chr3R	20156683	20156699	chr3R	20165864	20165878	roo	8	9180	10.0	5.5	7.8	0.9	9195	chr3R	20156683	intergenic	not near genes	chr3R	20161280	intergenic	not near genes	chr3R	20165878	intergenic	not near genes	chr3R_8_20160001	chr3R_20160001	RAL-440
1776	chr3R	20156700	20156718	chr3R	20165862	20165908	roo	6	9175	7.0	5.0	6.0	0.9	9208	chr3R	20156700	intergenic	not near genes	chr3R	20161304	intergenic	not near genes	chr3R	20165908	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-440
1781	chr3R	20266511	20266541	chr3R	20272995	20273023	Burdock	8	6483	2.5	6.5	4.5	1.5	6512	chr3R	20266511	intron	cic +	chr3R	20269767	intron	cic +	chr3R	20273023	intron	cic +	chr3R_8_20265001	chr3R_20265001	RAL-440
1783	chr3R	20330982	20331007	chr3R	20331488	20331509	roo	6	504	5.5	2.0	3.8	1.2	527	chr3R	20330982	intergenic	Sirt2 +	chr3R	20331246	intergenic	Sirt2 +	chr3R	20331509	intergenic	not near genes	chr3R_6_20330001	chr3R_20330001	RAL-440
1789	chr3R	20506588	20506600	chr3R	20507411	20507418	BS	4	818	4.0	5.5	4.8	0.7	830	chr3R	20506588	intergenic	Or92a +	chr3R	20507003	intergenic	CG4288 -	chr3R	20507418	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-440
1790	chr3R	20506603	20506610	chr3R	20507410	20507415	BS	4	810	4.0	5.0	4.5	0.7	812	chr3R	20506603	intergenic	Or92a +	chr3R	20507009	intergenic	CG4288 -	chr3R	20507415	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-440
1797	chr3R	20854499	20854509	chr3R	20859287	20859318	Doc	4	4796	14.5	7.5	11.0	0.3	4819	chr3R	20854499	intron	Ir93a -	chr3R	20856908	intron	Ir93a -	chr3R	20859318	exon	Ir93a -	chr3R_4_20855001	chr3R_20855001	RAL-440
1803	chr3R	21141667	21141699	chr3R	21150161	21150184	Tirant	5	8484	4.5	4.0	4.2	1.0	8517	chr3R	21141667	intron	SNF4Agamma +	chr3R	21145926	intron	SNF4Agamma +	chr3R	21150184	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-440
1815	chr3R	21761115	21761151	chr3R	21768514	21768539	mdg1	7	7399	2.5	4.5	3.5	1.6	7424	chr3R	21761115	exon	CG42335 +	chr3R	21764827	intron	CG42335 +	chr3R	21768539	exon	CG42335 +	chr3R_7_21760001	chr3R_21760001	RAL-440
1826	chr3R	22234677	22234710	chr3R	22236003	22236040	pogo	9	1332	2.5	5.0	3.8	1.9	1363	chr3R	22234677	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236040	intron	SKIP +	chr3R_9_22235001	chr3R_22235001	RAL-440
1832	chr3R	22450539	22450579	chr3R	22453183	22453214	NOF	9	2641	3.0	4.5	3.8	1.9	2675	chr3R	22450539	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453214	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-440
1855	chr3R	23558384	23558428	chr3R	23560185	23560226	Bari1	4	1798	1.5	3.0	2.2	1.2	1842	chr3R	23558384	intron	beat-IV +	chr3R	23559305	intron	beat-IV +	chr3R	23560226	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-440
1857	chr3R	23684717	23684728	chr3R	23685180	23685216	roo	4	474	1.5	4.5	3.0	1.0	499	chr3R	23684717	intron	CG18754 +	chr3R	23684966	intron	CG18754 +	chr3R	23685216	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-440
1859	chr3R	23835406	23835433	chr3R	23844558	23844603	roo	10	9166	3.0	2.0	2.5	2.9	9197	chr3R	23835406	intron	CG34355 +	chr3R	23840004	intron	CG34355 +	chr3R	23844603	intron	CG34355 +	chr3R_10_23840001	chr3R_23840001	RAL-440
1866	chr3R	24072084	24072122	chr3R	24072524	24072531	jockey	4	438	3.5	3.0	3.2	1.0	447	chr3R	24072084	intron	4EHP -	chr3R	24072308	intron	4EHP -	chr3R	24072531	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-440
1867	chr3R	24076919	24076947	chr3R	24078386	24078409	hobo	8	1472	6.5	4.0	5.2	1.3	1490	chr3R	24076919	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078409	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-440
1871	chr3R	24207220	24207239	chr3R	24212295	24212308	flea	5	5078	3.5	7.5	5.5	0.8	5088	chr3R	24207220	intron	twin -	chr3R	24209764	intron	twin -	chr3R	24212308	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-440
1881	chr3R	24493276	24493305	chr3R	24493517	24493545	BS	6	241	5.5	9.0	7.2	0.7	269	chr3R	24493276	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493545	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-440
1891	chr3R	24927139	24927148	chr3R	24931915	24931950	Doc	5	4792	4.5	1.5	3.0	1.2	4811	chr3R	24927139	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931950	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	RAL-440
1912	chr3R	25725814	25725860	chr3R	25734987	25735038	roo	11	9171	2.0	2.0	2.0	3.7	9224	chr3R	25725814	intron	LpR2 -	chr3R	25730426	intron	LpR2 -	chr3R	25735038	intron	LpR2 -	chr3R_11_25730001	chr3R_25730001	RAL-440
1914	chr3R	25832712	25832721	chr3R	25841884	25841912	roo	6	9186	3.0	5.0	4.0	1.2	9200	chr3R	25832712	exon	alpha4GT2 +	chr3R	25837312	intron	alpha4GT2 +	chr3R	25841912	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-440
1930	chr3R	26376316	26376358	chr3R	26385485	26385528	roo	12	9169	3.5	2.0	2.8	3.2	9212	chr3R	26376316	intergenic	not near genes	chr3R	26380922	intergenic	not near genes	chr3R	26385528	intergenic	not near genes	chr3R_12_26380001	chr3R_26380001	RAL-440
1933	chr3R	26510511	26510532	chr3R	26519581	26519606	roo	6	9070	3.5	6.0	4.8	1.0	9095	chr3R	26510511	intron	plum -	chr3R	26515058	intron	plum -	chr3R	26519606	intron,5` UTR	plum -,CR45226 +	chr3R_6_26515001	chr3R_26515001	RAL-440
1935	chr3R	26558314	26558358	chr3R	26565637	26565650	Stalker4	11	7314	5.5	1.0	3.2	2.6	7336	chr3R	26558314	intron	scrib +	chr3R	26561982	intron	scrib +	chr3R	26565650	intron	scrib +	chr3R_11_26560001	chr3R_26560001	RAL-440
1936	chr3R	26642722	26642760	chr3R	26643123	26643155	jockey	11	405	4.5	7.5	6.0	1.6	433	chr3R	26642722	intergenic	not near genes	chr3R	26642938	intergenic	not near genes	chr3R	26643155	intergenic	not near genes	chr3R_11_26640001	chr3R_26640001	RAL-440
1944	chr3R	26810540	26810576	chr3R	26811039	26811076	roo	13	500	3.5	7.0	5.2	2.1	536	chr3R	26810540	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811076	intron	Tl +	chr3R_13_26810001	chr3R_26810001	RAL-440
1947	chr3R	27007389	27007434	chr3R	27016542	27016546	roo	7	9140	4.0	2.5	3.2	1.7	9157	chr3R	27007389	intron	RYa-R +	chr3R	27011968	intron	RYa-R +	chr3R	27016546	intron	RYa-R +	chr3R_7_27010001	chr3R_27010001	RAL-440
1952	chr3R	27140506	27140547	chr3R	27148126	27148156	412	14	7615	9.5	6.5	8.0	1.6	7650	chr3R	27140506	intron	CG6051 -	chr3R	27144331	intron	CG6051 -	chr3R	27148156	intron	CG6051 -	chr3R_14_27140001	chr3R_27140001	RAL-440
1953	chr3R	27342791	27342817	chr3R	27351384	27351418	Tirant	11	8594	3.5	7.0	5.2	1.8	8627	chr3R	27342791	intron	CG42534 +	chr3R	27347104	intron	CG42534 +	chr3R	27351418	intron	CG42534 +	chr3R_11_27345001	chr3R_27345001	RAL-440
1967	chr3R	27725549	27725597	chr3R	27731011	27731053	I-element	10	5457	4.5	2.0	3.2	2.4	5504	chr3R	27725549	intergenic	not near genes	chr3R	27728301	intergenic	not near genes	chr3R	27731053	intergenic	not near genes	chr3R_10_27725001	chr3R_27725001	RAL-440
1970	chr3R	27856738	27856790	chr3R	27858241	27858283	hopper2	14	1495	6.0	2.0	4.0	2.8	1545	chr3R	27856738	intron	CG34353 -	chr3R	27857510	intron	CG34353 -	chr3R	27858283	intron	CG34353 -	chr3R_14_27855001	chr3R_27855001	RAL-440
1971	chr3R	27875700	27875731	chr3R	27882760	27882761	297	13	7061	1.5	8.0	4.8	2.2	7061	chr3R	27875700	intron	CG34353 -	chr3R	27879230	intron	CG34353 -	chr3R	27882761	intron	CG34353 -	chr3R_13_27875001	chr3R_27875001	RAL-440
1976	chr3R	28068477	28068517	chr3R	28073939	28073944	I-element	5	5449	0.5	2.0	1.2	2.3	5467	chr3R	28068477	intron	CG34362 +	chr3R	28071210	intron	CG34362 +	chr3R	28073944	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	RAL-440
1979	chr3R	28253348	28253366	chr3R	28255861	28255888	jockey	6	2518	1.5	5.5	3.5	1.3	2540	chr3R	28253348	intergenic	not near genes	chr3R	28254618	intergenic	not near genes	chr3R	28255888	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-440
1980	chr3R	28302102	28302128	chr3R	28302544	28302569	jockey	5	442	3.0	3.5	3.2	1.2	467	chr3R	28302102	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302569	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-440
1999	chr3R	28758279	28758287	chr3R	28763900	28763915	roo	7	5631	9.5	0.0	4.8	1.2	5636	chr3R	28758279	intergenic	aqrs -	chr3R	28761097	intergenic	not near genes	chr3R	28763915	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-440
2013	chr3R	29319817	29319854	chr3R	29320149	29320189	jockey	6	329	2.0	2.0	2.0	2.0	372	chr3R	29319817	intergenic	Cnx99A -	chr3R	29320003	intergenic	Cnx99A -	chr3R	29320189	intergenic	not near genes	chr3R_6_29320001	chr3R_29320001	RAL-440
2017	chr3R	29406628	29406645	chr3R	29407911	29407934	jockey	4	1288	2.5	7.5	5.0	0.7	1306	chr3R	29406628	intron	Ptp99A +	chr3R	29407281	intron	Ptp99A +	chr3R	29407934	intron	Ptp99A +	chr3R_4_29405001	chr3R_29405001	RAL-440
2024	chr3R	29738245	29738296	chr3R	29739732	29739769	hobo	10	1482	2.0	1.5	1.8	3.6	1524	chr3R	29738245	intergenic	CG1969 +,CG7598 +	chr3R	29739007	intron	CG1969 +	chr3R	29739769	5` UTR	CG1969 +	chr3R_10_29735001	chr3R_29735001	RAL-440
2025	chr3R	29760354	29760383	chr3R	29761568	29761600	pogo	6	1218	4.5	3.5	4.0	1.2	1246	chr3R	29760354	intergenic	not near genes	chr3R	29760977	intergenic	not near genes	chr3R	29761600	intergenic	not near genes	chr3R_6_29760001	chr3R_29760001	RAL-440
2028	chr3R	29882007	29882023	chr3R	29891183	29891200	roo	4	9176	6.0	4.5	5.2	0.6	9193	chr3R	29882007	intron	CG31038 +	chr3R	29886604	intron	CG31038 +	chr3R	29891200	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-440
2029	chr3R	29882025	29882051	chr3R	29891182	29891212	roo	12	9169	3.0	4.5	3.8	2.5	9187	chr3R	29882025	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891212	intron	CG31038 +	chr3R_12_29885001	chr3R_29885001	RAL-440
2039	chr3R	30317326	30317349	chr3R	30324920	30324955	roo	5	7603	1.0	6.0	3.5	1.1	7629	chr3R	30317326	intron	hdc +	chr3R	30321140	intron	hdc +	chr3R	30324955	intron	hdc +	chr3R_5_30320001	chr3R_30320001	RAL-440
2041	chr3R	30375528	30375568	chr3R	30383169	30383201	412	6	7633	1.5	1.0	1.2	2.7	7673	chr3R	30375528	intergenic	not near genes	chr3R	30379364	intergenic	not near genes	chr3R	30383201	intergenic	not near genes	chr3R_6_30375001	chr3R_30375001	RAL-440
2042	chr3R	30396196	30396240	chr3R	30404482	30404516	roo	6	8272	6.0	4.5	5.2	1.0	8320	chr3R	30396196	intergenic	not near genes	chr3R	30400356	intergenic	not near genes	chr3R	30404516	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	RAL-440
2052	chr3R	30679514	30679551	chr3R	30686992	30687025	blood	9	7476	4.0	6.0	5.0	1.5	7511	chr3R	30679514	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687025	intergenic	not near genes	chr3R_9_30680001	chr3R_30680001	RAL-440
2056	chr3R	30818803	30818843	chr3R	30820379	30820402	1360	5	1573	7.5	3.0	5.2	0.8	1599	chr3R	30818803	intron	cindr +	chr3R	30819602	intron	cindr +	chr3R	30820402	intron	cindr +	chr3R_5_30815001	chr3R_30815001	RAL-440
2063	chr3R	31074235	31074261	chr3R	31081832	31081864	springer	6	7603	3.5	2.5	3.0	1.5	7629	chr3R	31074235	intron	Sox100B +	chr3R	31078050	intron	Sox100B +	chr3R	31081864	intron	Sox100B +	chr3R_6_31075001	chr3R_31075001	RAL-440
2067	chr3R	31279388	31279403	chr3R	31285564	31285580	diver	6	6186	2.0	1.5	1.8	2.1	6192	chr3R	31279388	intergenic	not near genes	chr3R	31282484	intergenic	not near genes	chr3R	31285580	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-440
2068	chr3R	31413087	31413119	chr3R	31418288	31418322	copia	7	5201	2.0	0.5	1.2	3.2	5235	chr3R	31413087	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	RAL-440
2079	chr3R	31691519	31691559	chr3R	31696296	31696330	Doc	15	4773	5.0	6.5	5.8	2.2	4811	chr3R	31691519	intergenic	not near genes	chr3R	31693924	intergenic	not near genes	chr3R	31696330	intergenic	not near genes	chr3R_15_31690001	chr3R_31690001	RAL-440
2087	chr3R	31997984	31997994	chr3R	32005468	32005484	blood	4	7488	6.0	7.0	6.5	0.5	7500	chr3R	31997984	intron	heph -	chr3R	32001734	intron	heph -	chr3R	32005484	intron	heph -	chr3R_4_32000001	chr3R_32000001	RAL-440
2088	chr3R	31997996	31998021	chr3R	32005464	32005508	blood	8	7476	2.0	6.0	4.0	1.6	7512	chr3R	31997996	intron	heph -	chr3R	32001752	intron	heph -	chr3R	32005508	intron	heph -	chr3R_8_32000001	chr3R_32000001	RAL-440
2092	chr4	76481	76515	chr4	81941	81958	I-element	6	5450	4.5	2.5	3.5	1.3	5477	chr4	76481	intron	pan +	chr4	79220	intron	pan +	chr4	81958	intron	pan +	chr4_6_75001	chr4_75001	RAL-440
2099	chr4	671601	671634	chr4	680186	680222	Tirant	14	8594	3.5	7.0	5.2	2.3	8621	chr4	671601	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680222	intron	CG11360 +	chr4_14_675001	chr4_675001	RAL-440
2107	chrX	318451	318498	chrX	323557	323600	flea	11	5099	3.5	3.0	3.2	2.6	5149	chrX	318451	intron,intron	CG3777 +,CG32816 -	chrX	321026	intron,intron	CG3777 +,CG32816 -	chrX	323600	intron,intron	CG3777 +,CG32816 -	chrX_11_320001	chrX_320001	RAL-440
2109	chrX	428401	428452	chrX	434605	434652	3S18	15	6195	3.5	5.0	4.2	2.9	6251	chrX	428401	intron	CG32816 -	chrX	431526	intron	CG32816 -	chrX	434652	intron	CG32816 -	chrX_15_430001	chrX_430001	RAL-440
2117	chrX	812265	812289	chrX	817908	817930	297	4	5646	2.5	3.0	2.8	1.1	5665	chrX	812265	intron	CG43867 -	chrX	815098	intron	CG43867 -	chrX	817930	intron	CG43867 -	chrX_4_815001	chrX_815001	RAL-440
2118	chrX	827599	827606	chrX	835396	835408	roo	5	7798	8.0	8.5	8.2	0.5	7809	chrX	827599	intron	CG43867 -	chrX	831504	intron	CG43867 -	chrX	835408	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-440
2119	chrX	827608	827631	chrX	835395	835443	roo	14	7800	4.5	8.0	6.2	1.9	7835	chrX	827608	intron	CG43867 -	chrX	831526	intron	CG43867 -	chrX	835443	intron	CG43867 -	chrX_14_830001	chrX_830001	RAL-440
2120	chrX	906686	906720	chrX	908490	908510	S-element	10	1800	3.0	7.0	5.0	1.7	1824	chrX	906686	intron	CG43867 -	chrX	907598	intron	CG43867 -	chrX	908510	intron	CG43867 -	chrX_10_905001	chrX_905001	RAL-440
2125	chrX	1357770	1357806	chrX	1367947	1367984	Doc	15	10178	3.5	5.5	4.5	2.7	10214	chrX	1357770	intergenic	png -	chrX	1362877	intergenic	not near genes	chrX	1367984	intergenic	not near genes	chrX_15_1360001	chrX_1360001	RAL-440
2126	chrX	1518020	1518037	chrX	1523442	1523442	jockey	4	5415	5.5	6.0	5.8	0.6	5422	chrX	1518020	intergenic	inc +	chrX	1520731	intergenic	not near genes	chrX	1523442	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-440
2127	chrX	1518045	1518076	chrX	1523441	1523452	jockey	10	5407	2.5	6.0	4.2	1.9	5407	chrX	1518045	intergenic	inc +	chrX	1520748	intergenic	not near genes	chrX	1523452	intergenic	not near genes	chrX_10_1520001	chrX_1520001	RAL-440
2129	chrX	1930524	1930570	chrX	1938115	1938161	opus	6	7583	1.5	4.0	2.8	1.6	7637	chrX	1930524	intergenic	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938161	3` UTR	CG3857 -	chrX_6_1930001	chrX_1930001	RAL-440
2135	chrX	2664378	2664418	chrX	2665538	2665568	1360	6	1154	5.5	1.5	3.5	1.3	1190	chrX	2664378	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665568	intron	sgg +	chrX_6_2660001	chrX_2660001	RAL-440
2136	chrX	2844889	2844929	chrX	2852309	2852358	mdg1	10	7422	4.5	3.5	4.0	2.0	7469	chrX	2844889	intron	kirre +	chrX	2848624	intron	kirre +	chrX	2852358	intron	kirre +	chrX_10_2845001	chrX_2845001	RAL-440
2147	chrX	3415015	3415046	chrX	3421202	3421235	3S18	10	6194	2.0	4.5	3.2	2.4	6220	chrX	3415015	intron,intron	CR44999 +,CG12535 -	chrX	3418125	intron,intron	CR44999 +,CG12535 -	chrX	3421235	intron,intron	CR44999 +,CG12535 -	chrX_10_3415001	chrX_3415001	RAL-440
2148	chrX	3493082	3493125	chrX	3502253	3502273	roo	6	9160	5.5	2.5	4.0	1.2	9191	chrX	3493082	intron,intron	CR44999 +,Gas8 -	chrX	3497678	intron,intron	CR44999 +,Gas8 -	chrX	3502273	intron,intron	CR44999 +,Gas8 -	chrX_6_3495001	chrX_3495001	RAL-440
2149	chrX	3597548	3597584	chrX	3619721	3619741	roo	12	22179	3.5	3.0	3.2	2.9	22193	chrX	3597548	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619741	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	RAL-440
2153	chrX	3726753	3726772	chrX	3730170	3730174	NOF	5	3410	10.5	4.0	7.2	0.6	3421	chrX	3726753	intron	tlk +	chrX	3728464	intron	tlk +	chrX	3730174	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-440
2157	chrX	3986858	3986894	chrX	3994497	3994547	412	8	7647	3.0	4.0	3.5	1.8	7689	chrX	3986858	intergenic	not near genes	chrX	3990702	intergenic	not near genes	chrX	3994547	intergenic	not near genes	chrX_8_3990001	chrX_3990001	RAL-440
2162	chrX	4157890	4157917	chrX	4164958	4164981	297	6	7066	6.0	3.0	4.5	1.1	7091	chrX	4157890	intron	Fas2 -	chrX	4161436	intron	Fas2 -	chrX	4164981	intron	Fas2 -	chrX_6_4160001	chrX_4160001	RAL-440
2166	chrX	4700381	4700390	chrX	4700737	4700753	jockey	4	358	8.5	4.0	6.2	0.6	372	chrX	4700381	3` UTR	ctp +	chrX	4700567	3` UTR	ctp +	chrX	4700753	3` UTR	ctp +	chrX_4_4700001	chrX_4700001	RAL-440
2167	chrX	4700392	4700421	chrX	4700733	4700773	jockey	9	352	5.0	3.0	4.0	1.8	381	chrX	4700392	3` UTR	ctp +	chrX	4700582	3` UTR	ctp +	chrX	4700773	3` UTR	ctp +	chrX_9_4700001	chrX_4700001	RAL-440
2168	chrX	4731797	4731830	chrX	4736907	4736922	jockey	9	5099	6.0	6.5	6.2	1.2	5125	chrX	4731797	intergenic	not near genes	chrX	4734360	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_9_4730001	chrX_4730001	RAL-440
2169	chrX	4763248	4763266	chrX	4763745	4763773	Stalker4	7	501	7.5	6.0	6.8	0.9	525	chrX	4763248	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_7_4760001	chrX_4760001	RAL-440
2170	chrX	4792377	4792395	chrX	4792813	4792843	jockey	6	444	4.0	3.5	3.8	1.2	466	chrX	4792377	intergenic	not near genes	chrX	4792610	intergenic	not near genes	chrX	4792843	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-440
2171	chrX	4827952	4827994	chrX	4835343	4835375	Stalker4	7	7374	2.0	3.0	2.5	2.0	7423	chrX	4827952	intergenic	not near genes	chrX	4831664	intergenic	not near genes	chrX	4835375	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-440
2172	chrX	4827995	4828001	chrX	4835340	4835376	Stalker4	5	7360	2.0	2.0	2.0	1.7	7381	chrX	4827995	intergenic	not near genes	chrX	4831686	intergenic	not near genes	chrX	4835376	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-440
2175	chrX	4990023	4990070	chrX	4997257	4997295	roo	11	7229	3.0	3.0	3.0	2.8	7272	chrX	4990023	intron	CR44833 -	chrX	4993659	intron	CR44833 -	chrX	4997295	intron	CR44833 -	chrX_11_4990001	chrX_4990001	RAL-440
2176	chrX	5096276	5096304	chrX	5103845	5103885	springer	6	7569	1.0	2.0	1.5	2.4	7609	chrX	5096276	intron,intron	CG15465 +,rg +	chrX	5100080	intron,intron	CG15465 +,rg +	chrX	5103885	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-440
2181	chrX	5338698	5338735	chrX	5339960	5339991	jockey	4	1261	1.0	5.5	3.2	1.0	1293	chrX	5338698	intergenic	not near genes	chrX	5339344	intergenic	not near genes	chrX	5339991	intergenic	SK +	chrX_4_5335001	chrX_5335001	RAL-440
2185	chrX	5883792	5883795	chrX	5884053	5884056	pogo	4	260	10.5	5.5	8.0	0.4	264	chrX	5883792	intron	CR45668 -	chrX	5883924	intron	CR45668 -	chrX	5884056	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-440
2186	chrX	5883803	5883841	chrX	5884049	5884096	pogo	8	254	3.0	5.0	4.0	1.6	293	chrX	5883803	intron	CR45668 -	chrX	5883950	intron	CR45668 -	chrX	5884096	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-440
2187	chrX	5884154	5884191	chrX	5884406	5884443	pogo	12	254	2.5	5.0	3.8	2.5	289	chrX	5884154	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884443	intron	CR45668 -	chrX_12_5880001	chrX_5880001	RAL-440
2191	chrX	6171589	6171610	chrX	6179015	6179055	Quasimodo	6	7434	3.5	4.5	4.0	1.2	7466	chrX	6171589	intron	Ca-alpha1T -	chrX	6175322	intron	Ca-alpha1T -	chrX	6179055	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-440
2195	chrX	6392884	6392902	chrX	6397653	6397665	Doc	4	4770	2.0	4.0	3.0	1.0	4781	chrX	6392884	intergenic	not near genes	chrX	6395274	intergenic	not near genes	chrX	6397665	intergenic	not near genes	chrX_4_6395001	chrX_6395001	RAL-440
2197	chrX	6562815	6562849	chrX	6571302	6571337	Tirant	5	8489	3.0	1.5	2.2	1.6	8522	chrX	6562815	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571337	intron	CG34417 +	chrX_5_6565001	chrX_6565001	RAL-440
2199	chrX	6605459	6605509	chrX	6608500	6608551	Burdock	10	3036	0.5	6.5	3.5	2.2	3092	chrX	6605459	intron	pigs +	chrX	6607005	intron	pigs +	chrX	6608551	intron	pigs +	chrX_10_6605001	chrX_6605001	RAL-440
2205	chrX	7023592	7023614	chrX	7030998	7031012	Tabor	5	7406	12.0	4.0	8.0	0.6	7420	chrX	7023592	intron	CG12541 -	chrX	7027302	intron	CG12541 -	chrX	7031012	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-440
2206	chrX	7023618	7023633	chrX	7030989	7031033	Tabor	4	7384	8.5	3.0	5.8	0.6	7415	chrX	7023618	intron	CG12541 -	chrX	7027326	intron	CG12541 -	chrX	7031033	intron	CG12541 -	chrX_4_7025001	chrX_7025001	RAL-440
2208	chrX	7125238	7125275	chrX	7134402	7134443	roo	10	9171	1.5	2.5	2.0	3.3	9205	chrX	7125238	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134443	intergenic	not near genes	chrX_10_7125001	chrX_7125001	RAL-440
2213	chrX	7702897	7702939	chrX	7703344	7703365	jockey	13	447	3.0	0.0	1.5	5.2	468	chrX	7702897	intron	CHES-1-like -	chrX	7703131	intron	CHES-1-like -	chrX	7703365	intron	CHES-1-like -	chrX_13_7700001	chrX_7700001	RAL-440
2215	chrX	8031411	8031453	chrX	8035740	8035769	Juan	11	4324	5.0	6.5	5.8	1.6	4358	chrX	8031411	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035769	3` UTR	CG2233 -	chrX_11_8030001	chrX_8030001	RAL-440
2223	chrX	8922328	8922363	chrX	8922758	8922789	jockey	10	442	3.5	3.5	3.5	2.2	461	chrX	8922328	intron	rdgA +	chrX	8922558	intron	rdgA +	chrX	8922789	intron	rdgA +	chrX_10_8920001	chrX_8920001	RAL-440
2224	chrX	8948758	8948784	chrX	8956272	8956289	roo	6	7521	2.5	3.0	2.8	1.6	7531	chrX	8948758	intron	rdgA +	chrX	8952524	intron	rdgA +	chrX	8956289	intron	rdgA +	chrX_6_8950001	chrX_8950001	RAL-440
2227	chrX	9508129	9508168	chrX	9509662	9509691	jockey	8	1529	3.5	4.0	3.8	1.7	1562	chrX	9508129	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509691	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-440
2230	chrX	9575802	9575811	chrX	9576115	9576129	mdg3	5	325	5.5	7.0	6.2	0.7	327	chrX	9575802	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576129	intron,exon	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-440
2231	chrX	9575815	9575820	chrX	9576113	9576136	mdg3	4	314	4.0	6.5	5.2	0.6	321	chrX	9575815	intron,exon	CG32699 -,CG42395 -	chrX	9575976	intron,intron	CG32699 -,CG42395 -	chrX	9576136	intron,5` UTR	CG32699 -,CG42395 -	chrX_4_9575001	chrX_9575001	RAL-440
2234	chrX	10138197	10138239	chrX	10145720	10145761	412	8	7516	3.5	4.5	4.0	1.6	7564	chrX	10138197	intron,intron	RhoU +,CR44894 -	chrX	10141979	intron,intron	RhoU +,CR44894 -	chrX	10145761	intron,intron	RhoU +,CR44894 -	chrX_8_10140001	chrX_10140001	RAL-440
2238	chrX	10267307	10267326	chrX	10276462	10276482	roo	4	9161	0.5	1.0	0.8	2.2	9175	chrX	10267307	3` UTR	alpha-Man-I -	chrX	10271894	intron	alpha-Man-I -	chrX	10276482	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	RAL-440
2240	chrX	10348815	10348831	chrX	10356368	10356395	springer	5	7567	0.5	1.5	1.0	2.5	7580	chrX	10348815	intergenic	snoRNA:U3:9B +	chrX	10352605	intergenic	not near genes	chrX	10356395	intergenic	l(1)G0289 -	chrX_5_10350001	chrX_10350001	RAL-440
2243	chrX	10550856	10550883	chrX	10552317	10552355	hobo	9	1469	6.5	2.5	4.5	1.6	1499	chrX	10550856	intron	spri -	chrX	10551606	intron	spri -	chrX	10552355	intron	spri -	chrX_9_10550001	chrX_10550001	RAL-440
2246	chrX	10686048	10686083	chrX	10691185	10691236	roo	9	5148	4.0	4.0	4.0	1.8	5188	chrX	10686048	intron	X11Lbeta +	chrX	10688642	intron	X11Lbeta +	chrX	10691236	intron	X11Lbeta +	chrX_9_10685001	chrX_10685001	RAL-440
2247	chrX	10772678	10772690	chrX	10772766	10772786	Tirant	5	93	3.5	2.0	2.8	1.3	108	chrX	10772678	intron	CG15211 +	chrX	10772732	intron	CG15211 +	chrX	10772786	intron	CG15211 +	chrX_5_10770001	chrX_10770001	RAL-440
2251	chrX	11184237	11184283	chrX	11189336	11189363	flea	4	5088	1.5	5.5	3.5	0.9	5126	chrX	11184237	intergenic	not near genes	chrX	11186800	intergenic	not near genes	chrX	11189363	intergenic	not near genes	chrX_4_11185001	chrX_11185001	RAL-440
2253	chrX	11312038	11312092	chrX	11319411	11319438	Stalker2	7	7361	1.5	2.0	1.8	2.5	7400	chrX	11312038	intergenic	not near genes	chrX	11315738	intergenic	not near genes	chrX	11319438	intergenic	not near genes	chrX_7_11315001	chrX_11315001	RAL-440
2256	chrX	11535029	11535041	chrX	11541511	11541531	Burdock	4	6487	9.0	3.5	6.2	0.6	6502	chrX	11535029	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541531	intron	Drak +	chrX_4_11535001	chrX_11535001	RAL-440
2257	chrX	11633410	11633444	chrX	11640469	11640517	297	15	7068	6.5	4.5	5.5	2.3	7107	chrX	11633410	intron	Ptp10D +	chrX	11636964	intron	Ptp10D +	chrX	11640517	intron	Ptp10D +	chrX_15_11635001	chrX_11635001	RAL-440
2261	chrX	12168129	12168153	chrX	12173581	12173615	I-element	4	5454	2.0	2.0	2.0	1.3	5486	chrX	12168129	intron	Ten-a +	chrX	12170872	intron	Ten-a +	chrX	12173615	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-440
2271	chrX	12930595	12930607	chrX	12937720	12937743	HMS-Beagle	5	7126	3.0	7.0	5.0	0.8	7148	chrX	12930595	intron	fne +	chrX	12934169	intron	fne +	chrX	12937743	intron	fne +	chrX_5_12930001	chrX_12930001	RAL-440
2279	chrX	13401465	13401496	chrX	13401835	13401856	jockey	6	368	1.5	1.5	1.5	2.4	391	chrX	13401465	intergenic	CG1673 +,CG12725 -	chrX	13401660	intergenic	CG12725 -,CG1673 +	chrX	13401856	3` UTR	CG12725 -	chrX_6_13400001	chrX_13400001	RAL-440
2280	chrX	13429459	13429487	chrX	13430614	13430632	jockey	5	1156	6.5	5.0	5.8	0.7	1173	chrX	13429459	intergenic	not near genes	chrX	13430046	intergenic	not near genes	chrX	13430632	intergenic	not near genes	chrX_5_13430001	chrX_13430001	RAL-440
2281	chrX	13463637	13463676	chrX	13469226	13469260	mdg3	9	5590	4.5	1.5	3.0	2.2	5623	chrX	13463637	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469260	intron	Neto +	chrX_9_13465001	chrX_13465001	RAL-440
2284	chrX	13937959	13938009	chrX	13941248	13941250	I-element	8	3275	2.5	1.0	1.8	2.9	3291	chrX	13937959	intron	mamo -	chrX	13939604	intron	mamo -	chrX	13941250	intron	mamo -	chrX_8_13935001	chrX_13935001	RAL-440
2287	chrX	14105022	14105056	chrX	14114172	14114176	roo	9	9148	3.5	3.5	3.5	2.0	9154	chrX	14105022	intergenic	not near genes	chrX	14109599	intergenic	not near genes	chrX	14114176	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-440
2291	chrX	14157584	14157603	chrX	14163261	14163276	297	7	5674	5.0	5.5	5.2	1.1	5692	chrX	14157584	intergenic	not near genes	chrX	14160430	intergenic	not near genes	chrX	14163276	intergenic	not near genes	chrX_7_14160001	chrX_14160001	RAL-440
2302	chrX	14636451	14636494	chrX	14641909	14641932	I-element	7	5449	2.5	7.0	4.8	1.2	5481	chrX	14636451	intron	NetA -	chrX	14639192	intron	NetA -	chrX	14641932	intron	NetA -	chrX_7_14635001	chrX_14635001	RAL-440
2303	chrX	14778019	14778031	chrX	14782835	14782848	Doc	4	4816	8.5	4.0	6.2	0.6	4829	chrX	14778019	intergenic	CG5347 +	chrX	14780434	intergenic	not near genes	chrX	14782848	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-440
2304	chrX	14778034	14778063	chrX	14782826	14782838	Doc	10	4806	5.0	3.0	4.0	2.0	4804	chrX	14778034	intergenic	CG5347 +	chrX	14780436	intergenic	not near genes	chrX	14782838	intergenic	Ag5r2 -	chrX_10_14780001	chrX_14780001	RAL-440
2305	chrX	14818777	14818798	chrX	14823983	14824007	copia	7	5206	3.0	5.0	4.0	1.4	5230	chrX	14818777	intron	rut -	chrX	14821392	intron	rut -	chrX	14824007	intron	rut -	chrX_7_14820001	chrX_14820001	RAL-440
2307	chrX	14936843	14936888	chrX	14946115	14946162	roo	9	9274	2.0	2.0	2.0	3.0	9319	chrX	14936843	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946162	intron	pdgy -	chrX_9_14940001	chrX_14940001	RAL-440
2311	chrX	15413050	15413086	chrX	15417358	15417371	Juan	7	4303	4.5	6.5	5.5	1.1	4321	chrX	15413050	intron	Cngl -	chrX	15415210	intron	Cngl -	chrX	15417371	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-440
2312	chrX	15435690	15435697	chrX	15436127	15436143	rover	4	446	0.0	5.5	2.8	1.1	453	chrX	15435690	intron	Cngl -	chrX	15435916	intron	Cngl -	chrX	15436143	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-440
2317	chrX	16492642	16492670	chrX	16498223	16498257	mdg3	9	5590	4.0	6.0	5.0	1.5	5615	chrX	16492642	intron	para -	chrX	16495450	intron	para -	chrX	16498257	intron	para -	chrX_9_16495001	chrX_16495001	RAL-440
2320	chrX	17057926	17057963	chrX	17058176	17058222	pogo	5	256	2.5	2.0	2.2	1.6	296	chrX	17057926	intron	CG45002 -	chrX	17058074	intron	CG45002 -	chrX	17058222	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-440
2322	chrX	17195198	17195227	chrX	17200289	17200326	flea	8	5098	1.5	3.0	2.2	2.5	5128	chrX	17195198	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200326	3` UTR	baz +	chrX_8_17195001	chrX_17195001	RAL-440
2339	chrX	18194057	18194097	chrX	18194599	18194645	BS	15	543	8.0	2.5	5.2	2.4	588	chrX	18194057	intron	Frq2 +	chrX	18194351	intron	Frq2 +	chrX	18194645	intron	Frq2 +	chrX_15_18190001	chrX_18190001	RAL-440
2342	chrX	18429481	18429524	chrX	18434812	18434847	Transpac	5	5328	2.0	4.0	3.0	1.2	5366	chrX	18429481	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434847	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-440
2349	chrX	18957054	18957085	chrX	18965735	18965766	roo	4	8681	2.5	4.5	3.5	0.9	8712	chrX	18957054	intron	CG43759 +	chrX	18961410	intron	CG43759 +	chrX	18965766	intron	CG43759 +	chrX_4_18960001	chrX_18960001	RAL-440
2351	chrX	19060394	19060434	chrX	19065197	19065235	Doc	9	4801	4.0	4.5	4.2	1.7	4841	chrX	19060394	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065235	intron	CG14190 +	chrX_9_19060001	chrX_19060001	RAL-440
2364	chrX	19356982	19357015	chrX	19358434	19358435	NOF	5	1445	4.5	0.0	2.2	1.6	1453	chrX	19356982	intron	kek5 +	chrX	19357708	intron	kek5 +	chrX	19358435	intron	kek5 +	chrX_5_19355001	chrX_19355001	RAL-440
2365	chrX	19380138	19380188	chrX	19380396	19380433	pogo	10	255	6.5	2.5	4.5	1.8	295	chrX	19380138	intron	kek5 +	chrX	19380286	intron	kek5 +	chrX	19380433	intron	kek5 +	chrX_10_19380001	chrX_19380001	RAL-440
2366	chrX	19472130	19472150	chrX	19472698	19472739	jockey	8	575	2.0	6.0	4.0	1.6	609	chrX	19472130	intergenic	kek5 +	chrX	19472434	intergenic	not near genes	chrX	19472739	intergenic	not near genes	chrX_8_19470001	chrX_19470001	RAL-440
2367	chrX	19472152	19472160	chrX	19472697	19472705	jockey	5	565	2.0	5.5	3.8	1.0	553	chrX	19472152	intergenic	kek5 +	chrX	19472428	intergenic	not near genes	chrX	19472705	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-440
2370	chrX	19710069	19710104	chrX	19711859	19711894	S-element	13	1794	3.0	5.0	4.0	2.6	1825	chrX	19710069	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711894	intron	meso18E -	chrX_13_19710001	chrX_19710001	RAL-440
2384	chrX	20377333	20377347	chrX	20378805	20378805	hobo	7	1476	3.0	2.5	2.8	1.8	1472	chrX	20377333	intergenic	not near genes	chrX	20378069	intergenic	not near genes	chrX	20378805	intergenic	not near genes	chrX_7_20375001	chrX_20375001	RAL-440
2391	chrX	20504116	20504138	chrX	20505657	20505675	transib2	6	1535	4.0	5.5	4.8	1.0	1559	chrX	20504116	intron	RhoGAP19D -	chrX	20504896	intron	RhoGAP19D -	chrX	20505675	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RAL-440
2395	chrX	20836716	20836757	chrX	20844338	20844355	roo	7	7615	0.5	4.0	2.2	2.2	7639	chrX	20836716	intron	shakB -	chrX	20840536	intron	shakB -	chrX	20844355	intron	shakB -	chrX_7_20840001	chrX_20840001	RAL-440
2396	chrX	20940715	20940749	chrX	20942188	20942217	hobo	10	1478	5.0	2.0	3.5	2.2	1502	chrX	20940715	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942217	intergenic	not near genes	chrX_10_20940001	chrX_20940001	RAL-440
2399	chrX	20956982	20956995	chrX	20962427	20962443	I-element	5	5451	2.5	2.5	2.5	1.4	5461	chrX	20956982	intergenic	not near genes	chrX	20959712	intergenic	not near genes	chrX	20962443	intergenic	Ser6 -	chrX_5_20955001	chrX_20955001	RAL-440
2403	chrX	21061874	21061897	chrX	21062376	21062402	roo	4	504	2.5	2.5	2.5	1.1	528	chrX	21061874	intron	bves +	chrX	21062138	intron	bves +	chrX	21062402	intron,3` UTR	bves +,CG32512 -	chrX_4_21060001	chrX_21060001	RAL-440
2405	chrX	21086122	21086164	chrX	21087158	21087201	jockey	14	1038	1.5	4.5	3.0	3.5	1079	chrX	21086122	intergenic	not near genes	chrX	21086662	intergenic	not near genes	chrX	21087201	intergenic	not near genes	chrX_14_21085001	chrX_21085001	RAL-440
2412	chrX	21458694	21458728	chrX	21464130	21464163	Ivk	8	5440	0.5	5.0	2.8	2.1	5469	chrX	21458694	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464163	intergenic	not near genes	chrX_8_21460001	chrX_21460001	RAL-440
2413	chrX	21474390	21474434	chrX	21474776	21474819	1731	10	380	3.5	5.5	4.5	1.8	429	chrX	21474390	intergenic	not near genes	chrX	21474604	intergenic	not near genes	chrX	21474819	intergenic	not near genes	chrX_10_21470001	chrX_21470001	RAL-440
2419	chrX	22522632	22522649	chrX	22525449	22525489	NOF	5	2833	6.0	3.0	4.5	0.9	2857	chrX	22522632	intron	CG17600 +	chrX	22524060	intron	CG17600 +	chrX	22525489	intron	CG17600 +	chrX_5_22520001	chrX_22520001	RAL-440
2420	chrX	22564563	22564565	chrX	22575116	22575135	jockey	5	10564	18.5	14.0	16.2	0.3	10572	chrX	22564563	intergenic	not near genes	chrX	22569849	intergenic	not near genes	chrX	22575135	intergenic	not near genes	chrX_5_22565001	chrX_22565001	RAL-440
2423	chrX	22697501	22697520	chrX	22701806	22701824	Juan	8	4308	2.0	4.5	3.2	1.9	4323	chrX	22697501	intron	CR44997 +	chrX	22699662	intron	CR44997 +	chrX	22701824	intron	CR44997 +	chrX_8_22695001	chrX_22695001	RAL-440
2426	chrX	22771499	22771536	chrX	22774795	22774821	297	7	3302	4.5	2.5	3.5	1.6	3322	chrX	22771499	intron	CR44997 +	chrX	22773160	intron	CR44997 +	chrX	22774821	intron	CR44997 +	chrX_7_22770001	chrX_22770001	RAL-440
2430	chrX	22908987	22908990	chrX	22913220	22913229	Burdock	5	4235	3.5	9.5	6.5	0.7	4242	chrX	22908987	intergenic	not near genes	chrX	22911108	intergenic	not near genes	chrX	22913229	intergenic	not near genes	chrX_5_22910001	chrX_22910001	RAL-440
2431	chrX	22987083	22987133	chrX	22989762	22989799	Burdock	6	2674	1.5	1.0	1.2	2.7	2716	chrX	22987083	intron,intron	stnA -,stnB -	chrX	22988441	intron,intron	stnA -,stnB -	chrX	22989799	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	RAL-440
2432	chrX	22996305	22996330	chrX	23003542	23003580	roo	8	7246	2.0	3.5	2.8	2.1	7275	chrX	22996305	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003580	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	RAL-440