SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46337 46385 chr2L 46434 46463 9 92 1.5 2.5 2.0 3.0 126 chr2L 46337 intron Cda5 - chr2L 46400 intron Cda5 - chr2L 46463 intron Cda5 - chr2L_9_45001 chr2L_45001 RAL-440 2 chr2L 47140 47168 chr2L 47303 47330 12 164 9.5 1.0 5.2 1.9 190 chr2L 47140 intron Cda5 - chr2L 47235 intron Cda5 - chr2L 47330 intron Cda5 - chr2L_12_45001 chr2L_45001 RAL-440 3 chr2L 47453 47487 chr2L 52567 52592 jockey 11 5118 7.0 10.0 8.5 1.2 5139 chr2L 47453 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-440 4 chr2L 347875 347911 chr2L 355384 355402 blood 8 7507 4.5 2.0 3.2 1.9 7527 chr2L 347875 3` UTR Plc21C + chr2L 351638 intron Plc21C + chr2L 355402 3` UTR Plc21C + chr2L_8_350001 chr2L_350001 RAL-440 5 chr2L 371431 371455 chr2L 371522 371543 6 91 3.0 3.5 3.2 1.4 112 chr2L 371431 intergenic not near genes chr2L 371487 intergenic not near genes chr2L 371543 intergenic not near genes chr2L_6_370001 chr2L_370001 RAL-440 6 chr2L 425693 425704 chr2L 425793 425810 4 105 3.0 0.5 1.8 1.4 117 chr2L 425693 intergenic BBS8 + chr2L 425752 intergenic BBS8 + chr2L 425810 intergenic BBS8 + chr2L_4_425001 chr2L_425001 RAL-440 7 chr2L 504310 504343 chr2L 504396 504430 4 85 4.5 6.0 5.2 0.6 120 chr2L 504310 intron ush + chr2L 504370 intron ush + chr2L 504430 intron ush + chr2L_4_500001 chr2L_500001 RAL-440 8 chr2L 686927 686947 chr2L 695968 695984 roo 6 9047 2.0 7.0 4.5 1.1 9057 chr2L 686927 intron ds - chr2L 691456 intron ds - chr2L 695984 intron ds - chr2L_6_690001 chr2L_690001 RAL-440 9 chr2L 764570 764591 chr2L 764647 764679 8 86 6.0 1.5 3.8 1.7 109 chr2L 764570 intergenic not near genes chr2L 764624 intergenic not near genes chr2L 764679 intergenic not near genes chr2L_8_760001 chr2L_760001 RAL-440 10 chr2L 770475 770494 chr2L 772244 772246 Bari1 9 1777 4.0 4.5 4.2 1.7 1771 chr2L 770475 intergenic not near genes chr2L 771360 intergenic not near genes chr2L 772246 intergenic CR44614 + chr2L_9_770001 chr2L_770001 RAL-440 11 chr2L 798870 798901 chr2L 799192 799220 11 321 4.5 1.5 3.0 2.8 350 chr2L 798870 intergenic not near genes chr2L 799045 intergenic not near genes chr2L 799220 intergenic not near genes chr2L_11_795001 chr2L_795001 RAL-440 12 chr2L 877839 877870 chr2L 877925 877943 5 83 4.0 2.5 3.2 1.2 104 chr2L 877839 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-440 13 chr2L 964555 964571 chr2L 964659 964674 4 100 0.5 9.5 5.0 0.7 119 chr2L 964555 intergenic not near genes chr2L 964614 intergenic not near genes chr2L 964674 intergenic not near genes chr2L_4_960001 chr2L_960001 RAL-440 14 chr2L 976873 976899 chr2L 984518 984547 roo 8 7645 6.5 2.5 4.5 1.5 7674 chr2L 976873 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-440 15 chr2L 1066076 1066126 chr2L 1066174 1066222 13 88 6.0 3.0 4.5 2.4 146 chr2L 1066076 intron S - chr2L 1066149 intron S - chr2L 1066222 intron S - chr2L_13_1065001 chr2L_1065001 RAL-440 16 chr2L 1094239 1094263 chr2L 1094329 1094359 6 90 5.0 1.0 3.0 1.5 120 chr2L 1094239 intron CG4629 - chr2L 1094299 intron CG4629 - chr2L 1094359 intron CG4629 - chr2L_6_1090001 chr2L_1090001 RAL-440 17 chr2L 1119198 1119233 chr2L 1119570 1119588 13 356 38.0 31.0 34.5 0.4 390 chr2L 1119198 intron Pino - chr2L 1119393 intron Pino - chr2L 1119588 intron Pino - chr2L_13_1115001 chr2L_1115001 RAL-440 18 chr2L 1156853 1156882 chr2L 1156964 1156966 5 108 4.0 3.0 3.5 1.1 113 chr2L 1156853 intron capt - chr2L 1156910 intron capt - chr2L 1156966 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-440 19 chr2L 1220124 1220161 chr2L 1227596 1227646 blood 15 7477 3.0 3.0 3.0 3.8 7522 chr2L 1220124 intron CG42329 + chr2L 1223885 intron CG42329 + chr2L 1227646 intron CG42329 + chr2L_15_1220001 chr2L_1220001 RAL-440 20 chr2L 1301735 1301782 chr2L 1302294 1302338 gypsy 10 552 2.0 3.5 2.8 2.6 603 chr2L 1301735 intergenic not near genes chr2L 1302036 intergenic not near genes chr2L 1302338 intergenic not near genes chr2L_10_1300001 chr2L_1300001 RAL-440 21 chr2L 1328234 1328248 chr2L 1328309 1328345 7 94 5.5 6.5 6.0 1.0 111 chr2L 1328234 intergenic not near genes chr2L 1328290 intergenic not near genes chr2L 1328345 intergenic not near genes chr2L_7_1325001 chr2L_1325001 RAL-440 22 chr2L 1400787 1400817 chr2L 1401155 1401191 7 370 6.0 1.5 3.8 1.5 404 chr2L 1400787 intron lea - chr2L 1400989 intron lea - chr2L 1401191 intron lea - chr2L_7_1400001 chr2L_1400001 RAL-440 23 chr2L 1570674 1570715 chr2L 1573563 1573601 F-element 8 2886 3.0 4.0 3.5 1.8 2927 chr2L 1570674 intron haf + chr2L 1572138 intron haf + chr2L 1573601 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-440 24 chr2L 1590956 1590985 chr2L 1591044 1591065 7 91 4.5 2.5 3.5 1.6 109 chr2L 1590956 intron haf + chr2L 1591010 intron haf + chr2L 1591065 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-440 25 chr2L 1678969 1679003 chr2L 1686444 1686463 blood 5 7475 3.5 6.5 5.0 0.8 7494 chr2L 1678969 intron chinmo + chr2L 1682716 intron chinmo + chr2L 1686463 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-440 26 chr2L 1781119 1781133 chr2L 1781276 1781297 8 161 11.0 7.5 9.2 0.8 178 chr2L 1781119 intergenic not near genes chr2L 1781208 intergenic not near genes chr2L 1781297 intergenic not near genes chr2L_8_1780001 chr2L_1780001 RAL-440 27 chr2L 2016127 2016161 chr2L 2016210 2016261 4 92 1.0 2.5 1.8 1.4 134 chr2L 2016127 intron CG4238 + chr2L 2016194 intron CG4238 + chr2L 2016261 intron CG4238 + chr2L_4_2015001 chr2L_2015001 RAL-440 28 chr2L 2100390 2100402 chr2L 2109525 2109546 roo 4 9145 4.0 2.5 3.2 1.0 9156 chr2L 2100390 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-440 29 chr2L 2305113 2305140 chr2L 2305208 2305248 11 106 4.5 4.5 4.5 2.0 135 chr2L 2305113 intergenic not near genes chr2L 2305180 intergenic not near genes chr2L 2305248 intergenic not near genes chr2L_11_2305001 chr2L_2305001 RAL-440 30 chr2L 2317111 2317132 chr2L 2317301 2317323 6 188 15.5 16.5 16.0 0.4 212 chr2L 2317111 intron,intron CG9967 -,eys + chr2L 2317217 intron,intron CG9967 -,eys + chr2L 2317323 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-440 31 chr2L 2498189 2498206 chr2L 2498265 2498298 4 83 3.0 2.5 2.8 1.1 109 chr2L 2498189 3` UTR oaf + chr2L 2498244 3` UTR oaf + chr2L 2498298 3` UTR oaf + chr2L_4_2495001 chr2L_2495001 RAL-440 32 chr2L 2504218 2504233 chr2L 2504314 2504323 5 94 6.5 6.0 6.2 0.7 105 chr2L 2504218 intergenic not near genes chr2L 2504270 intergenic not near genes chr2L 2504323 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-440 33 chr2L 2543077 2543080 chr2L 2543225 2543255 4 162 4.5 4.0 4.2 0.8 178 chr2L 2543077 intergenic not near genes chr2L 2543166 intergenic not near genes chr2L 2543255 intergenic not near genes chr2L_4_2540001 chr2L_2540001 RAL-440 34 chr2L 2565535 2565556 chr2L 2571627 2571649 297 6 6088 4.5 2.0 3.2 1.4 6114 chr2L 2565535 exon Cyp309a2 - chr2L 2568592 intron Cyp309a2 - chr2L 2571649 exon Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-440 35 chr2L 2587810 2587841 chr2L 2587893 2587910 9 81 1.5 3.0 2.2 2.8 100 chr2L 2587810 intergenic not near genes chr2L 2587860 intergenic not near genes chr2L 2587910 intergenic not near genes chr2L_9_2585001 chr2L_2585001 RAL-440 36 chr2L 2618027 2618060 chr2L 2618117 2618125 8 90 2.5 5.0 3.8 1.7 98 chr2L 2618027 intergenic not near genes chr2L 2618076 intergenic not near genes chr2L 2618125 intergenic not near genes chr2L_8_2615001 chr2L_2615001 RAL-440 37 chr2L 2661198 2661233 chr2L 2663030 2663073 I-element 4 1840 1.0 1.0 1.0 2.0 1875 chr2L 2661198 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663073 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-440 38 chr2L 2698866 2698895 chr2L 2698966 2698996 7 96 2.0 3.5 2.8 1.8 130 chr2L 2698866 intron CG31690 + chr2L 2698931 intron CG31690 + chr2L 2698996 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-440 39 chr2L 2713514 2713548 chr2L 2713616 2713639 10 100 4.0 6.0 5.0 1.7 125 chr2L 2713514 intron CG31690 + chr2L 2713576 intron CG31690 + chr2L 2713639 intron CG31690 + chr2L_10_2710001 chr2L_2710001 RAL-440 40 chr2L 2937407 2937445 chr2L 2937505 2937537 7 88 4.5 4.0 4.2 1.3 130 chr2L 2937407 intron lilli + chr2L 2937472 intron lilli + chr2L 2937537 intron lilli + chr2L_7_2935001 chr2L_2935001 RAL-440 41 chr2L 3073016 3073058 chr2L 3078233 3078270 copia 10 5219 3.0 3.5 3.2 2.4 5254 chr2L 3073016 intron toc - chr2L 3075643 intron toc - chr2L 3078270 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-440 42 chr2L 3108864 3108883 chr2L 3108944 3108963 8 90 1.0 1.5 1.2 3.6 99 chr2L 3108864 intron toc - chr2L 3108914 intron toc - chr2L 3108963 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-440 43 chr2L 3113409 3113445 chr2L 3113523 3113544 5 108 0.0 4.5 2.2 1.6 135 chr2L 3113409 intron toc - chr2L 3113476 intron toc - chr2L 3113544 intron toc - chr2L_5_3110001 chr2L_3110001 RAL-440 44 chr2L 3115555 3115577 chr2L 3115645 3115673 4 92 4.0 0.5 2.2 1.2 118 chr2L 3115555 intron toc - chr2L 3115614 intron toc - chr2L 3115673 intron toc - chr2L_4_3115001 chr2L_3115001 RAL-440 45 chr2L 3137070 3137121 chr2L 3137687 3137721 14 608 5.5 5.5 5.5 2.2 651 chr2L 3137070 intron toc - chr2L 3137396 intron toc - chr2L 3137721 intron toc - chr2L_14_3135001 chr2L_3135001 RAL-440 46 chr2L 3178795 3178797 chr2L 3179841 3179857 4 1050 25.5 42.0 33.8 0.1 1062 chr2L 3178795 intron CG34393 - chr2L 3179326 intron CG34393 - chr2L 3179857 intron CG34393 - chr2L_4_3175001 chr2L_3175001 RAL-440 47 chr2L 3178794 3178823 chr2L 3179859 3179885 8 1058 20.0 34.0 27.0 0.3 1091 chr2L 3178794 intron CG34393 - chr2L 3179340 intron CG34393 - chr2L 3179885 intron CG34393 - chr2L_8_3175001 chr2L_3175001 RAL-440 48 chr2L 3185681 3185723 chr2L 3185770 3185822 11 87 2.0 5.0 3.5 2.4 141 chr2L 3185681 intron CG34393 - chr2L 3185752 intron CG34393 - chr2L 3185822 intron CG34393 - chr2L_11_3185001 chr2L_3185001 RAL-440 49 chr2L 3251482 3251526 chr2L 3259067 3259106 springer 13 7581 1.5 6.0 3.8 2.7 7624 chr2L 3251482 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259106 intergenic not near genes chr2L_13_3255001 chr2L_3255001 RAL-440 50 chr2L 3286758 3286770 chr2L 3286824 3286833 10 81 4.5 4.5 4.5 1.8 75 chr2L 3286758 intergenic not near genes chr2L 3286796 intergenic not near genes chr2L 3286833 intergenic not near genes chr2L_10_3285001 chr2L_3285001 RAL-440 51 chr2L 3291218 3291256 chr2L 3291317 3291354 9 91 5.0 6.0 5.5 1.4 136 chr2L 3291218 intergenic CG9664 - chr2L 3291286 3` UTR CG9664 - chr2L 3291354 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-440 52 chr2L 3351636 3351660 chr2L 3351941 3351955 10 304 3.0 6.0 4.5 1.8 319 chr2L 3351636 intron E23 - chr2L 3351796 intron E23 - chr2L 3351955 intron E23 - chr2L_10_3350001 chr2L_3350001 RAL-440 53 chr2L 3367008 3367037 chr2L 3367164 3367166 13 162 3.5 2.0 2.8 3.4 158 chr2L 3367008 intron CG34394 - chr2L 3367087 intron CG34394 - chr2L 3367166 intron CG34394 - chr2L_13_3365001 chr2L_3365001 RAL-440 54 chr2L 3401867 3401890 chr2L 3401955 3401998 4 100 5.0 4.0 4.5 0.7 131 chr2L 3401867 intergenic not near genes chr2L 3401932 intergenic not near genes chr2L 3401998 intergenic not near genes chr2L_4_3400001 chr2L_3400001 RAL-440 55 chr2L 3437145 3437162 chr2L 3437240 3437260 7 99 1.5 5.0 3.2 1.7 115 chr2L 3437145 intergenic not near genes chr2L 3437202 intergenic not near genes chr2L 3437260 intergenic not near genes chr2L_7_3435001 chr2L_3435001 RAL-440 56 chr2L 3438572 3438578 chr2L 3438649 3438673 5 86 3.5 6.5 5.0 0.8 101 chr2L 3438572 intergenic not near genes chr2L 3438622 intergenic not near genes chr2L 3438673 intergenic not near genes chr2L_5_3435001 chr2L_3435001 RAL-440 57 chr2L 3508418 3508460 chr2L 3508503 3508520 14 78 1.0 2.0 1.5 5.6 102 chr2L 3508418 intergenic CR45299 +,tim - chr2L 3508469 intergenic CR45299 +,tim - chr2L 3508520 intergenic CR45299 +,tim - chr2L_14_3505001 chr2L_3505001 RAL-440 58 chr2L 3582879 3582895 chr2L 3582962 3582992 4 90 2.0 2.0 2.0 1.3 113 chr2L 3582879 intergenic not near genes chr2L 3582936 intergenic not near genes chr2L 3582992 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-440 59 chr2L 3603625 3603651 chr2L 3603723 3603760 8 107 3.0 3.5 3.2 1.9 135 chr2L 3603625 intergenic not near genes chr2L 3603692 intergenic not near genes chr2L 3603760 intergenic odd - chr2L_8_3600001 chr2L_3600001 RAL-440 60 chr2L 3634095 3634140 chr2L 3634185 3634212 26 95 4.5 7.5 6.0 3.7 117 chr2L 3634095 intron for - chr2L 3634154 intron for - chr2L 3634212 intron for - chr2L_26_3630001 chr2L_3630001 RAL-440 61 chr2L 3649793 3649805 chr2L 3654992 3655024 copia 6 5209 0.0 5.5 2.8 1.6 5231 chr2L 3649793 intron for - chr2L 3652408 intron for - chr2L 3655024 intron for - chr2L_6_3650001 chr2L_3650001 RAL-440 62 chr2L 3814598 3814637 chr2L 3814698 3814737 5 100 4.5 2.5 3.5 1.1 139 chr2L 3814598 intergenic not near genes chr2L 3814668 intergenic not near genes chr2L 3814737 intergenic not near genes chr2L_5_3810001 chr2L_3810001 RAL-440 63 chr2L 3891880 3891921 chr2L 3891981 3891986 8 92 3.0 2.5 2.8 2.1 106 chr2L 3891880 intron capu - chr2L 3891933 intron capu - chr2L 3891986 intron capu - chr2L_8_3890001 chr2L_3890001 RAL-440 64 chr2L 3936620 3936651 chr2L 3936703 3936742 7 90 3.5 0.0 1.8 2.5 122 chr2L 3936620 intron fred - chr2L 3936681 intron fred - chr2L 3936742 intron fred - chr2L_7_3935001 chr2L_3935001 RAL-440 65 chr2L 4007379 4007404 chr2L 4007471 4007484 7 91 0.0 2.5 1.2 3.2 105 chr2L 4007379 intergenic CG43773 + chr2L 4007432 intergenic CG43773 + chr2L 4007484 intergenic CG43773 + chr2L_7_4005001 chr2L_4005001 RAL-440 66 chr2L 4037787 4037807 chr2L 4037892 4037899 9 103 4.0 3.5 3.8 1.9 112 chr2L 4037787 intron ed + chr2L 4037843 intron ed + chr2L 4037899 intron ed + chr2L_9_4035001 chr2L_4035001 RAL-440 67 chr2L 4062106 4062149 chr2L 4062207 4062231 9 87 3.5 3.0 3.2 2.1 125 chr2L 4062106 intron ed + chr2L 4062168 intron ed + chr2L 4062231 intron ed + chr2L_9_4060001 chr2L_4060001 RAL-440 68 chr2L 4066043 4066061 chr2L 4068861 4068880 Juan 6 2826 2.5 2.0 2.2 1.9 2837 chr2L 4066043 intron ed + chr2L 4067462 intron ed + chr2L 4068880 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-440 69 chr2L 4150621 4150644 chr2L 4150718 4150744 4 93 1.5 3.0 2.2 1.2 123 chr2L 4150621 exon CG2955 + chr2L 4150682 exon CG2955 + chr2L 4150744 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-440 70 chr2L 4150646 4150648 chr2L 4150701 4150728 4 73 1.5 2.0 1.8 1.4 82 chr2L 4150646 exon CG2955 + chr2L 4150687 exon CG2955 + chr2L 4150728 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-440 71 chr2L 4184454 4184495 chr2L 4184793 4184824 7 335 0.5 2.0 1.2 3.2 370 chr2L 4184454 intergenic not near genes chr2L 4184639 intergenic not near genes chr2L 4184824 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-440 72 chr2L 4285716 4285725 chr2L 4285802 4285807 4 88 7.0 5.5 6.2 0.6 91 chr2L 4285716 intron tutl + chr2L 4285762 intron tutl + chr2L 4285807 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-440 73 chr2L 4342260 4342277 chr2L 4342362 4342377 6 106 3.0 1.5 2.2 1.9 117 chr2L 4342260 intron Atet + chr2L 4342318 intron Atet + chr2L 4342377 intron Atet + chr2L_6_4340001 chr2L_4340001 RAL-440 74 chr2L 4351469 4351498 chr2L 4351548 4351573 8 82 4.5 0.0 2.2 2.5 104 chr2L 4351469 intergenic CR44700 + chr2L 4351521 intergenic CR44700 + chr2L 4351573 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-440 75 chr2L 4424494 4424548 chr2L 4424623 4424660 8 123 3.5 1.5 2.5 2.3 166 chr2L 4424494 intron CG15431 - chr2L 4424577 intron CG15431 - chr2L 4424660 intron CG15431 - chr2L_8_4420001 chr2L_4420001 RAL-440 76 chr2L 4586290 4586326 chr2L 4586376 4586378 6 72 1.0 4.5 2.8 1.6 88 chr2L 4586290 intron dp - chr2L 4586334 intron dp - chr2L 4586378 intron dp - chr2L_6_4585001 chr2L_4585001 RAL-440 77 chr2L 4601685 4601737 chr2L 4609146 4609189 mdg1 14 7454 4.5 5.5 5.0 2.3 7504 chr2L 4601685 intron dp - chr2L 4605437 intron dp - chr2L 4609189 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-440 78 chr2L 4661832 4661854 chr2L 4669432 4669433 opus 6 7592 4.0 5.0 4.5 1.1 7601 chr2L 4661832 intergenic not near genes chr2L 4665632 intergenic not near genes chr2L 4669433 intergenic not near genes chr2L_6_4665001 chr2L_4665001 RAL-440 79 chr2L 4677592 4677619 chr2L 4677708 4677754 5 121 4.5 3.0 3.8 1.0 162 chr2L 4677592 intergenic not near genes chr2L 4677673 intergenic not near genes chr2L 4677754 intergenic not near genes chr2L_5_4675001 chr2L_4675001 RAL-440 80 chr2L 4698782 4698813 chr2L 4699303 4699341 10 523 20.5 18.5 19.5 0.5 559 chr2L 4698782 intron CG34351 + chr2L 4699062 intron CG34351 + chr2L 4699341 intron CG34351 + chr2L_10_4695001 chr2L_4695001 RAL-440 81 chr2L 4819502 4819511 chr2L 4819628 4819646 5 133 4.0 7.0 5.5 0.8 144 chr2L 4819502 intergenic not near genes chr2L 4819574 intergenic not near genes chr2L 4819646 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-440 82 chr2L 4869471 4869492 chr2L 4869566 4869592 7 95 3.5 5.5 4.5 1.3 121 chr2L 4869471 intron pog + chr2L 4869532 intron pog + chr2L 4869592 intron pog + chr2L_7_4865001 chr2L_4865001 RAL-440 83 chr2L 4918172 4918198 chr2L 4923244 4923278 jockey 6 5082 3.5 5.5 4.5 1.1 5106 chr2L 4918172 intron hoe1 - chr2L 4920725 intron hoe1 - chr2L 4923278 intron hoe1 - chr2L_6_4920001 chr2L_4920001 RAL-440 84 chr2L 4925659 4925696 chr2L 4925758 4925787 4 95 3.0 1.5 2.2 1.2 128 chr2L 4925659 intron hoe1 - chr2L 4925723 intron hoe1 - chr2L 4925787 intron hoe1 - chr2L_4_4925001 chr2L_4925001 RAL-440 85 chr2L 5117280 5117323 chr2L 5117381 5117384 10 93 3.0 4.5 3.8 2.1 104 chr2L 5117280 intron Msp300 + chr2L 5117332 intron Msp300 + chr2L 5117384 intron Msp300 + chr2L_10_5115001 chr2L_5115001 RAL-440 86 chr2L 5342753 5342793 chr2L 5345153 5345193 Doc 7 2398 4.5 2.5 3.5 1.6 2440 chr2L 5342753 intergenic not near genes chr2L 5343973 intergenic not near genes chr2L 5345193 intergenic not near genes chr2L_7_5340001 chr2L_5340001 RAL-440 87 chr2L 5351780 5351793 chr2L 5351886 5351886 6 102 8.5 3.5 6.0 0.9 106 chr2L 5351780 intron nompC + chr2L 5351833 intron nompC + chr2L 5351886 intron nompC + chr2L_6_5350001 chr2L_5350001 RAL-440 88 chr2L 5351795 5351830 chr2L 5351885 5351930 14 96 2.0 3.5 2.8 3.7 135 chr2L 5351795 intron nompC + chr2L 5351862 intron nompC + chr2L 5351930 intron nompC + chr2L_14_5350001 chr2L_5350001 RAL-440 89 chr2L 5494534 5494581 chr2L 5494649 5494688 13 110 3.0 2.5 2.8 3.4 154 chr2L 5494534 intergenic not near genes chr2L 5494611 intergenic not near genes chr2L 5494688 intergenic not near genes chr2L_13_5490001 chr2L_5490001 RAL-440 90 chr2L 5695855 5695892 chr2L 5695964 5695995 8 106 1.5 6.0 3.8 1.7 140 chr2L 5695855 intergenic not near genes chr2L 5695925 intergenic not near genes chr2L 5695995 intergenic not near genes chr2L_8_5695001 chr2L_5695001 RAL-440 91 chr2L 5698765 5698802 chr2L 5699508 5699551 7 747 3.5 2.5 3.0 1.8 786 chr2L 5698765 intergenic not near genes chr2L 5699158 intergenic not near genes chr2L 5699551 intergenic not near genes chr2L_7_5695001 chr2L_5695001 RAL-440 92 chr2L 5814687 5814714 chr2L 5814784 5814811 4 97 1.0 4.5 2.8 1.1 124 chr2L 5814687 intergenic not near genes chr2L 5814749 intergenic not near genes chr2L 5814811 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-440 93 chr2L 5827700 5827724 chr2L 5836724 5836735 roo 5 9020 7.5 5.0 6.2 0.7 9035 chr2L 5827700 intron TrissinR + chr2L 5832218 intron TrissinR + chr2L 5836735 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-440 94 chr2L 5827725 5827741 chr2L 5836717 5836758 roo 7 9012 5.5 4.0 4.8 1.2 9033 chr2L 5827725 intron TrissinR + chr2L 5832242 intron TrissinR + chr2L 5836758 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-440 95 chr2L 5852499 5852542 chr2L 5852621 5852662 11 120 8.0 1.5 4.8 1.9 163 chr2L 5852499 intron TrissinR + chr2L 5852580 intron TrissinR + chr2L 5852662 intron TrissinR + chr2L_11_5850001 chr2L_5850001 RAL-440 96 chr2L 5887587 5887633 chr2L 5887682 5887734 13 89 5.0 6.5 5.8 1.9 147 chr2L 5887587 3` UTR CR44577 - chr2L 5887660 3` UTR CR44577 - chr2L 5887734 3` UTR CR44577 - chr2L_13_5885001 chr2L_5885001 RAL-440 97 chr2L 5902183 5902208 chr2L 5902358 5902404 12 186 2.0 3.0 2.5 3.4 221 chr2L 5902183 intergenic not near genes chr2L 5902294 intergenic not near genes chr2L 5902404 intergenic not near genes chr2L_12_5900001 chr2L_5900001 RAL-440 98 chr2L 6070896 6070924 chr2L 6070985 6071022 7 98 0.0 4.5 2.2 2.2 126 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070959 intergenic Kr-h2 +,CG9154 - chr2L 6071022 5` UTR Kr-h2 + chr2L_7_6070001 chr2L_6070001 RAL-440 99 chr2L 6136545 6136579 chr2L 6136651 6136695 5 107 0.5 5.5 3.0 1.2 150 chr2L 6136545 intergenic not near genes chr2L 6136620 intergenic not near genes chr2L 6136695 intergenic not near genes chr2L_5_6135001 chr2L_6135001 RAL-440 100 chr2L 6211062 6211103 chr2L 6211163 6211198 10 98 1.5 4.5 3.0 2.5 136 chr2L 6211062 3` UTR CG34380 + chr2L 6211130 intergenic CG34380 + chr2L 6211198 intergenic CG34380 + chr2L_10_6210001 chr2L_6210001 RAL-440 101 chr2L 6227703 6227717 chr2L 6227805 6227821 5 101 5.0 3.0 4.0 1.0 118 chr2L 6227703 intergenic not near genes chr2L 6227762 intergenic not near genes chr2L 6227821 intergenic not near genes chr2L_5_6225001 chr2L_6225001 RAL-440 102 chr2L 6242960 6242986 chr2L 6243076 6243091 6 116 4.5 3.5 4.0 1.2 131 chr2L 6242960 intergenic not near genes chr2L 6243026 intergenic not near genes chr2L 6243091 intergenic not near genes chr2L_6_6240001 chr2L_6240001 RAL-440 103 chr2L 6363133 6363183 chr2L 6366079 6366114 Burdock 6 2938 4.0 1.5 2.8 1.6 2981 chr2L 6363133 intergenic not near genes chr2L 6364624 intergenic not near genes chr2L 6366114 intergenic not near genes chr2L_6_6360001 chr2L_6360001 RAL-440 104 chr2L 6426845 6426887 chr2L 6445123 6445147 roo 10 18272 7.0 5.0 6.0 1.4 18302 chr2L 6426845 3` UTR CG9527 - chr2L 6435996 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-440 105 chr2L 6537125 6537165 chr2L 6537221 6537263 10 95 2.5 1.5 2.0 3.3 138 chr2L 6537125 intron eya - chr2L 6537194 intron eya - chr2L 6537263 intron eya - chr2L_10_6535001 chr2L_6535001 RAL-440 106 chr2L 6544352 6544394 chr2L 6544464 6544488 12 107 7.0 5.0 6.0 1.7 136 chr2L 6544352 intron eya - chr2L 6544420 intron eya - chr2L 6544488 intron eya - chr2L_12_6540001 chr2L_6540001 RAL-440 107 chr2L 6564839 6564855 chr2L 6564939 6564942 4 100 4.0 2.5 3.2 1.0 103 chr2L 6564839 3` UTR CG13766 - chr2L 6564890 3` UTR CG13766 - chr2L 6564942 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-440 108 chr2L 6799523 6799570 chr2L 6799623 6799671 9 97 2.0 1.5 1.8 3.2 148 chr2L 6799523 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799671 intergenic CR43610 +,CG17376 - chr2L_9_6795001 chr2L_6795001 RAL-440 109 chr2L 6850357 6850399 chr2L 6850460 6850486 14 98 3.5 1.5 2.5 4.0 129 chr2L 6850357 intergenic not near genes chr2L 6850422 intergenic not near genes chr2L 6850486 intergenic not near genes chr2L_14_6850001 chr2L_6850001 RAL-440 110 chr2L 6876781 6876794 chr2L 6882967 6883005 diver 5 6201 8.5 4.5 6.5 0.7 6224 chr2L 6876781 intron Nlg2 + chr2L 6879893 intron Nlg2 + chr2L 6883005 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-440 111 chr2L 6891437 6891450 chr2L 6891553 6891561 5 114 7.5 7.0 7.2 0.6 124 chr2L 6891437 intron Nlg2 + chr2L 6891499 intron Nlg2 + chr2L 6891561 intron Nlg2 + chr2L_5_6890001 chr2L_6890001 RAL-440 112 chr2L 6891455 6891467 chr2L 6891548 6891553 5 100 4.0 6.5 5.2 0.8 98 chr2L 6891455 intron Nlg2 + chr2L 6891504 intron Nlg2 + chr2L 6891553 intron Nlg2 + chr2L_5_6890001 chr2L_6890001 RAL-440 113 chr2L 7126857 7126878 chr2L 7126945 7126962 4 90 2.5 0.5 1.5 1.6 105 chr2L 7126857 intron Pvf3 - chr2L 7126910 intron Pvf3 - chr2L 7126962 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-440 114 chr2L 7246551 7246580 chr2L 7247419 7247457 4 872 0.5 3.5 2.0 1.3 906 chr2L 7246551 intron Ndae1 - chr2L 7247004 intron Ndae1 - chr2L 7247457 intron Ndae1 - chr2L_4_7245001 chr2L_7245001 RAL-440 115 chr2L 7295976 7296023 chr2L 7296134 7296175 6 155 2.0 2.5 2.2 1.9 199 chr2L 7295976 intergenic not near genes chr2L 7296076 intergenic not near genes chr2L 7296175 intergenic not near genes chr2L_6_7295001 chr2L_7295001 RAL-440 116 chr2L 7343320 7343353 chr2L 7350443 7350489 roo 4 7127 5.0 2.0 3.5 0.9 7169 chr2L 7343320 intron Wnt6 + chr2L 7346904 intron Wnt6 + chr2L 7350489 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-440 117 chr2L 7436192 7436211 chr2L 7436298 7436307 5 101 4.5 2.0 3.2 1.2 115 chr2L 7436192 intergenic not near genes chr2L 7436250 intergenic not near genes chr2L 7436307 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-440 118 chr2L 7436212 7436221 chr2L 7436293 7436309 6 92 2.5 2.0 2.2 1.9 97 chr2L 7436212 intergenic not near genes chr2L 7436260 intergenic not near genes chr2L 7436309 intergenic not near genes chr2L_6_7435001 chr2L_7435001 RAL-440 119 chr2L 7513763 7513798 chr2L 7513858 7513895 12 94 1.0 3.0 2.0 4.0 132 chr2L 7513763 intron RapGAP1 - chr2L 7513829 intron RapGAP1 - chr2L 7513895 intron RapGAP1 - chr2L_12_7510001 chr2L_7510001 RAL-440 120 chr2L 7525358 7525392 chr2L 7525453 7525466 4 88 7.5 6.5 7.0 0.5 108 chr2L 7525358 intron RapGAP1 - chr2L 7525412 intron RapGAP1 - chr2L 7525466 intron RapGAP1 - chr2L_4_7525001 chr2L_7525001 RAL-440 121 chr2L 7567468 7567507 chr2L 7567565 7567596 13 91 5.0 3.5 4.2 2.5 128 chr2L 7567468 intron RapGAP1 - chr2L 7567532 intron RapGAP1 - chr2L 7567596 intron RapGAP1 - chr2L_13_7565001 chr2L_7565001 RAL-440 122 chr2L 7579190 7579225 chr2L 7579397 7579432 BS 4 207 4.0 2.0 3.0 1.0 242 chr2L 7579190 intergenic RapGAP1 - chr2L 7579311 intergenic RapGAP1 - chr2L 7579432 intergenic RapGAP1 - chr2L_4_7575001 chr2L_7575001 RAL-440 123 chr2L 7766629 7766652 chr2L 7766705 7766744 5 73 3.0 0.0 1.5 2.0 115 chr2L 7766629 intergenic not near genes chr2L 7766686 intergenic not near genes chr2L 7766744 intergenic not near genes chr2L_5_7765001 chr2L_7765001 RAL-440 124 chr2L 7814122 7814152 chr2L 7814203 7814243 15 90 1.5 3.0 2.2 4.7 121 chr2L 7814122 intron LanB1 + chr2L 7814182 intron LanB1 + chr2L 7814243 intron LanB1 + chr2L_15_7810001 chr2L_7810001 RAL-440 125 chr2L 7928275 7928295 chr2L 7928358 7928368 8 84 3.0 4.5 3.8 1.7 93 chr2L 7928275 intron Snoo - chr2L 7928322 intron Snoo - chr2L 7928368 intron Snoo - chr2L_8_7925001 chr2L_7925001 RAL-440 126 chr2L 7977071 7977113 chr2L 7984066 7984107 297 11 6985 4.0 3.5 3.8 2.3 7036 chr2L 7977071 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984107 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 RAL-440 127 chr2L 8003032 8003061 chr2L 8003134 8003163 4 102 0.5 7.0 3.8 0.8 131 chr2L 8003032 intron Wwox - chr2L 8003098 intron Wwox - chr2L 8003163 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-440 128 chr2L 8013607 8013636 chr2L 8018816 8018823 copia 5 5207 5.0 0.0 2.5 1.4 5216 chr2L 8013607 intron Tg + chr2L 8016215 intron Tg + chr2L 8018823 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-440 129 chr2L 8044093 8044126 chr2L 8044177 8044211 11 89 2.0 2.0 2.0 3.7 118 chr2L 8044093 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044211 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-440 130 chr2L 8156297 8156327 chr2L 8156417 8156448 7 119 3.5 3.5 3.5 1.6 151 chr2L 8156297 intron,intron CG8552 -,CG43394 + chr2L 8156372 intron,intron CG8552 -,CG43394 + chr2L 8156448 intron,intron CG8552 -,CG43394 + chr2L_7_8155001 chr2L_8155001 RAL-440 131 chr2L 8171277 8171296 chr2L 8171361 8171388 4 92 0.0 4.0 2.0 1.3 111 chr2L 8171277 intron Piezo + chr2L 8171332 intron Piezo + chr2L 8171388 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-440 132 chr2L 8184907 8184953 chr2L 8185010 8185056 13 102 1.0 3.0 2.0 4.3 149 chr2L 8184907 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185056 intron Piezo + chr2L_13_8180001 chr2L_8180001 RAL-440 133 chr2L 8285018 8285036 chr2L 8285096 8285132 9 86 4.5 4.0 4.2 1.7 114 chr2L 8285018 intron Btk29A - chr2L 8285075 intron Btk29A - chr2L 8285132 intron Btk29A - chr2L_9_8285001 chr2L_8285001 RAL-440 134 chr2L 8334443 8334487 chr2L 8334533 8334583 5 94 4.0 6.5 5.2 0.8 140 chr2L 8334443 intergenic not near genes chr2L 8334513 intergenic not near genes chr2L 8334583 intergenic not near genes chr2L_5_8330001 chr2L_8330001 RAL-440 135 chr2L 8377053 8377059 chr2L 8383112 8383163 13 6069 30.5 41.0 35.8 0.4 6110 chr2L 8377053 5` UTR CG17294 + chr2L 8380108 exon Aats-ala - chr2L 8383163 exon Rcd4 + chr2L_13_8380001 chr2L_8380001 RAL-440 136 chr2L 8452416 8452449 chr2L 8461590 8461640 roo 10 9181 5.5 3.5 4.5 1.8 9224 chr2L 8452416 intron fu12 - chr2L 8457028 intron fu12 - chr2L 8461640 intron fu12 - chr2L_10_8455001 chr2L_8455001 RAL-440 137 chr2L 8508975 8509000 chr2L 8509097 8509120 5 119 0.0 3.0 1.5 2.0 145 chr2L 8508975 intergenic CG13096 - chr2L 8509048 intergenic CG13096 - chr2L 8509120 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-440 138 chr2L 8558820 8558868 chr2L 8558913 8558955 13 88 4.5 5.0 4.8 2.2 135 chr2L 8558820 intron Sema-1a + chr2L 8558888 intron Sema-1a + chr2L 8558955 intron Sema-1a + chr2L_13_8555001 chr2L_8555001 RAL-440 139 chr2L 8580173 8580221 chr2L 8580274 8580322 9 94 4.0 4.0 4.0 1.8 149 chr2L 8580173 intron Sema-1a + chr2L 8580248 intron Sema-1a + chr2L 8580322 intron Sema-1a + chr2L_9_8580001 chr2L_8580001 RAL-440 140 chr2L 8612846 8612868 chr2L 8612933 8612958 5 86 3.5 5.0 4.2 1.0 112 chr2L 8612846 intron Sema-1a + chr2L 8612902 intron Sema-1a + chr2L 8612958 intron Sema-1a + chr2L_5_8610001 chr2L_8610001 RAL-440 141 chr2L 8698325 8698341 chr2L 8698474 8698500 7 156 5.5 0.0 2.8 1.8 175 chr2L 8698325 intron Hnf4 - chr2L 8698412 intron Hnf4 - chr2L 8698500 intron Hnf4 - chr2L_7_8695001 chr2L_8695001 RAL-440 142 chr2L 8723119 8723147 chr2L 8731490 8731527 Tirant 10 8385 3.0 5.5 4.2 1.9 8408 chr2L 8723119 intron raw - chr2L 8727323 intron raw - chr2L 8731527 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-440 143 chr2L 8810753 8810802 chr2L 8810862 8810890 5 97 1.5 3.5 2.5 1.4 137 chr2L 8810753 intergenic not near genes chr2L 8810822 intergenic not near genes chr2L 8810890 intergenic not near genes chr2L_5_8810001 chr2L_8810001 RAL-440 144 chr2L 8910725 8910739 chr2L 8910813 8910849 6 100 4.0 2.5 3.2 1.4 124 chr2L 8910725 intron CG34398 + chr2L 8910787 intron CG34398 + chr2L 8910849 intron CG34398 + chr2L_6_8910001 chr2L_8910001 RAL-440 145 chr2L 8956211 8956235 chr2L 8956305 8956324 8 94 2.5 0.0 1.2 3.6 113 chr2L 8956211 intron CG31886 - chr2L 8956268 intron CG31886 - chr2L 8956324 intron CG31886 - chr2L_8_8955001 chr2L_8955001 RAL-440 146 chr2L 8997267 8997267 chr2L 8997611 8997655 9 357 27.5 35.5 31.5 0.3 388 chr2L 8997267 5` UTR alien - chr2L 8997461 intergenic alien -,CG18661 + chr2L 8997655 5` UTR CG18661 + chr2L_9_8995001 chr2L_8995001 RAL-440 147 chr2L 9000266 9000279 chr2L 9007796 9007798 roo 4 7526 13.0 5.5 9.2 0.4 7532 chr2L 9000266 intergenic Try29F + chr2L 9004032 intergenic not near genes chr2L 9007798 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-440 148 chr2L 9000281 9000309 chr2L 9007789 9007795 roo 10 7516 5.5 5.0 5.2 1.6 7514 chr2L 9000281 intergenic Try29F + chr2L 9004038 intergenic not near genes chr2L 9007795 intergenic not near genes chr2L_10_9000001 chr2L_9000001 RAL-440 149 chr2L 9027752 9027794 chr2L 9028051 9028079 10 291 2.0 6.0 4.0 2.0 327 chr2L 9027752 intron,intron CG9582 -,CR44352 - chr2L 9027916 intron,intron CG9582 -,CR44352 - chr2L 9028079 intron,intron CG9582 -,CR44352 - chr2L_10_9025001 chr2L_9025001 RAL-440 150 chr2L 9116590 9116627 chr2L 9116710 9116746 6 119 3.5 2.0 2.8 1.6 156 chr2L 9116590 intergenic not near genes chr2L 9116668 intergenic not near genes chr2L 9116746 intergenic not near genes chr2L_6_9115001 chr2L_9115001 RAL-440 151 chr2L 9190953 9190958 chr2L 9191028 9191047 4 88 0.0 4.5 2.2 1.2 94 chr2L 9190953 intron tai + chr2L 9191000 intron tai + chr2L 9191047 intron tai + chr2L_4_9190001 chr2L_9190001 RAL-440 152 chr2L 9268219 9268234 chr2L 9268283 9268327 4 71 2.5 3.0 2.8 1.1 108 chr2L 9268219 intron Ggamma30A + chr2L 9268273 intron Ggamma30A + chr2L 9268327 intron Ggamma30A + chr2L_4_9265001 chr2L_9265001 RAL-440 153 chr2L 9278882 9278904 chr2L 9278983 9279011 8 104 6.0 0.0 3.0 2.0 129 chr2L 9278882 intron Ggamma30A + chr2L 9278946 intron Ggamma30A + chr2L 9279011 intron Ggamma30A + chr2L_8_9275001 chr2L_9275001 RAL-440 154 chr2L 9283214 9283429 chr2L 9283322 9283528 12 95 2.0 0.0 1.0 6.0 314 chr2L 9283214 intron Ggamma30A + chr2L 9283371 intron Ggamma30A + chr2L 9283528 intron Ggamma30A + chr2L_12_9280001 chr2L_9280001 RAL-440 155 chr2L 9297362 9297391 chr2L 9297456 9297468 7 91 6.5 6.0 6.2 1.0 106 chr2L 9297362 3` UTR Ggamma30A + chr2L 9297415 3` UTR Ggamma30A + chr2L 9297468 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-440 156 chr2L 9322803 9322831 chr2L 9322895 9322895 10 91 4.0 3.0 3.5 2.2 92 chr2L 9322803 intergenic not near genes chr2L 9322849 intergenic not near genes chr2L 9322895 intergenic not near genes chr2L_10_9320001 chr2L_9320001 RAL-440 157 chr2L 9354082 9354102 chr2L 9354490 9354522 5 414 1.0 3.5 2.2 1.6 440 chr2L 9354082 intergenic not near genes chr2L 9354302 intergenic not near genes chr2L 9354522 intergenic not near genes chr2L_5_9350001 chr2L_9350001 RAL-440 158 chr2L 9362134 9362149 chr2L 9362228 9362243 6 94 5.5 7.5 6.5 0.8 109 chr2L 9362134 intergenic not near genes chr2L 9362188 intergenic not near genes chr2L 9362243 intergenic not near genes chr2L_6_9360001 chr2L_9360001 RAL-440 159 chr2L 9379445 9379474 chr2L 9379680 9379718 9 235 2.5 4.0 3.2 2.1 273 chr2L 9379445 intron Shawl - chr2L 9379582 intron Shawl - chr2L 9379718 intron Shawl - chr2L_9_9375001 chr2L_9375001 RAL-440 160 chr2L 9380226 9380247 chr2L 9380341 9380356 7 110 5.0 3.5 4.2 1.3 130 chr2L 9380226 exon Shawl - chr2L 9380291 intron Shawl - chr2L 9380356 intron Shawl - chr2L_7_9380001 chr2L_9380001 RAL-440 161 chr2L 9393479 9393531 chr2L 9396464 9396508 jockey 17 2983 3.5 5.0 4.2 3.3 3029 chr2L 9393479 intron Shawl - chr2L 9394994 intron Shawl - chr2L 9396508 intron Shawl - chr2L_17_9390001 chr2L_9390001 RAL-440 162 chr2L 9454983 9454999 chr2L 9455091 9455109 5 117 5.0 2.0 3.5 1.1 126 chr2L 9454983 intron numb + chr2L 9455046 intron numb + chr2L 9455109 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-440 163 chr2L 9490501 9490552 chr2L 9490601 9490652 15 90 2.5 7.0 4.8 2.6 151 chr2L 9490501 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490652 intergenic not near genes chr2L_15_9490001 chr2L_9490001 RAL-440 164 chr2L 9496944 9496947 chr2L 9497033 9497068 4 114 0.0 4.5 2.2 1.2 124 chr2L 9496944 intron CG33298 + chr2L 9497006 intron CG33298 + chr2L 9497068 intron CG33298 + chr2L_4_9495001 chr2L_9495001 RAL-440 165 chr2L 9524130 9524170 chr2L 9524230 9524258 12 98 2.5 5.0 3.8 2.5 128 chr2L 9524130 intron Oatp30B + chr2L 9524194 intron Oatp30B + chr2L 9524258 intron Oatp30B + chr2L_12_9520001 chr2L_9520001 RAL-440 166 chr2L 9676854 9676905 chr2L 9677094 9677125 16 232 4.5 4.0 4.2 3.1 271 chr2L 9676854 intergenic not near genes chr2L 9676990 intergenic not near genes chr2L 9677125 intergenic not near genes chr2L_16_9675001 chr2L_9675001 RAL-440 167 chr2L 9680214 9680246 chr2L 9680302 9680339 8 91 4.0 7.5 5.8 1.2 125 chr2L 9680214 intergenic not near genes chr2L 9680276 intergenic not near genes chr2L 9680339 intergenic not near genes chr2L_8_9680001 chr2L_9680001 RAL-440 168 chr2L 9837413 9837445 chr2L 9837511 9837529 7 93 4.0 0.0 2.0 2.3 116 chr2L 9837413 intron nAChRalpha6 - chr2L 9837471 intron nAChRalpha6 - chr2L 9837529 intron nAChRalpha6 - chr2L_7_9835001 chr2L_9835001 RAL-440 169 chr2L 9845995 9846034 chr2L 9846117 9846148 11 124 4.0 2.0 3.0 2.8 153 chr2L 9845995 intron nAChRalpha6 - chr2L 9846072 intron nAChRalpha6 - chr2L 9846148 intron nAChRalpha6 - chr2L_11_9845001 chr2L_9845001 RAL-440 170 chr2L 9880986 9881040 chr2L 9881084 9881126 15 92 4.0 4.5 4.2 2.9 140 chr2L 9880986 intron nAChRalpha6 - chr2L 9881056 intron nAChRalpha6 - chr2L 9881126 intron nAChRalpha6 - chr2L_15_9880001 chr2L_9880001 RAL-440 171 chr2L 9892497 9892533 chr2L 9892593 9892629 13 92 4.5 7.5 6.0 1.9 132 chr2L 9892497 intron mtDNA-helicase - chr2L 9892563 intron mtDNA-helicase - chr2L 9892629 intron mtDNA-helicase - chr2L_13_9890001 chr2L_9890001 RAL-440 172 chr2L 9973709 9973733 chr2L 9980846 9980851 HMS-Beagle 4 7129 7.0 3.5 5.2 0.6 7142 chr2L 9973709 intergenic not near genes chr2L 9977280 intergenic not near genes chr2L 9980851 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-440 173 chr2L 9973734 9973737 chr2L 9980845 9980846 HMS-Beagle 4 7121 6.5 3.5 5.0 0.7 7112 chr2L 9973734 intergenic not near genes chr2L 9977290 intergenic not near genes chr2L 9980846 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-440 174 chr2L 9973742 9973759 chr2L 9980844 9980874 HMS-Beagle 10 7114 4.0 3.0 3.5 2.2 7132 chr2L 9973742 intergenic not near genes chr2L 9977308 intergenic not near genes chr2L 9980874 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-440 175 chr2L 10095619 10095658 chr2L 10095715 10095754 7 94 6.0 2.5 4.2 1.3 135 chr2L 10095619 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095754 intron CG44153 - chr2L_7_10095001 chr2L_10095001 RAL-440 176 chr2L 10129158 10129200 chr2L 10129265 10129304 13 109 1.5 4.5 3.0 3.2 146 chr2L 10129158 intron CG44153 - chr2L 10129231 intron CG44153 - chr2L 10129304 intron CG44153 - chr2L_13_10125001 chr2L_10125001 RAL-440 177 chr2L 10138172 10138190 chr2L 10143436 10143438 Rt1c 6 5257 3.5 3.5 3.5 1.3 5266 chr2L 10138172 intron CG44153 - chr2L 10140805 intron CG44153 - chr2L 10143438 intron CG44153 - chr2L_6_10140001 chr2L_10140001 RAL-440 178 chr2L 10156334 10156355 chr2L 10163790 10163822 blood 7 7469 3.5 5.0 4.2 1.3 7488 chr2L 10156334 intron,3` UTR CG44153 -,CG4839 + chr2L 10160078 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-440 179 chr2L 10178317 10178331 chr2L 10178744 10178777 4 438 1.5 3.5 2.5 1.1 460 chr2L 10178317 5` UTR CG44153 - chr2L 10178547 intron CG44153 - chr2L 10178777 intron CG44153 - chr2L_4_10175001 chr2L_10175001 RAL-440 180 chr2L 10209829 10209849 chr2L 10209926 10209946 4 95 3.5 0.0 1.8 1.4 117 chr2L 10209829 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209888 3` UTR CG5727 - chr2L 10209946 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-440 181 chr2L 10232912 10232938 chr2L 10233009 10233026 5 92 2.0 4.0 3.0 1.2 114 chr2L 10232912 intron eEF1delta + chr2L 10232969 intron eEF1delta + chr2L 10233026 intron eEF1delta + chr2L_5_10230001 chr2L_10230001 RAL-440 182 chr2L 10294657 10294682 chr2L 10294761 10294787 7 104 3.0 2.5 2.8 1.8 130 chr2L 10294657 intron Hand - chr2L 10294722 intron Hand - chr2L 10294787 intron Hand - chr2L_7_10290001 chr2L_10290001 RAL-440 183 chr2L 10458199 10458212 chr2L 10458314 10458326 4 115 0.5 1.0 0.8 2.2 127 chr2L 10458199 intron LM408 + chr2L 10458262 intron LM408 + chr2L 10458326 intron LM408 + chr2L_4_10455001 chr2L_10455001 RAL-440 184 chr2L 10490256 10490304 chr2L 10490358 10490406 7 97 4.5 3.0 3.8 1.5 150 chr2L 10490256 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490331 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490406 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_7_10490001 chr2L_10490001 RAL-440 185 chr2L 10515349 10515382 chr2L 10515452 10515482 7 105 3.0 2.0 2.5 2.0 133 chr2L 10515349 intron,intron CG45083 -,Fatp - chr2L 10515416 intron,intron CG45083 -,Fatp - chr2L 10515482 intron,intron CG45083 -,Fatp - chr2L_7_10515001 chr2L_10515001 RAL-440 186 chr2L 10574559 10574598 chr2L 10574670 10574715 12 112 4.0 2.5 3.2 2.9 156 chr2L 10574559 intron Trim9 + chr2L 10574637 intron Trim9 + chr2L 10574715 intron Trim9 + chr2L_12_10570001 chr2L_10570001 RAL-440 187 chr2L 10580771 10580810 chr2L 10580872 10580900 4 93 2.0 1.5 1.8 1.4 129 chr2L 10580771 intron Trim9 + chr2L 10580836 intron Trim9 + chr2L 10580900 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-440 188 chr2L 10592826 10592869 chr2L 10600507 10600537 opus 8 7676 3.0 5.0 4.0 1.6 7711 chr2L 10592826 intron Trim9 + chr2L 10596682 intron Trim9 + chr2L 10600537 intron Trim9 + chr2L_8_10595001 chr2L_10595001 RAL-440 189 chr2L 10698559 10698587 chr2L 10698657 10698697 4 97 1.5 2.5 2.0 1.3 138 chr2L 10698559 intergenic CR44181 + chr2L 10698628 intergenic CR44181 + chr2L 10698697 intergenic not near genes chr2L_4_10695001 chr2L_10695001 RAL-440 190 chr2L 10755560 10755582 chr2L 10755676 10755683 4 116 6.5 2.5 4.5 0.7 123 chr2L 10755560 intron CG17124 - chr2L 10755622 intron CG17124 - chr2L 10755683 intron CG17124 - chr2L_4_10755001 chr2L_10755001 RAL-440 191 chr2L 10756372 10756387 chr2L 10756743 10756758 4 372 9.0 5.5 7.2 0.5 386 chr2L 10756372 intergenic CG17124 - chr2L 10756565 intergenic CG17124 - chr2L 10756758 intergenic CG17124 - chr2L_4_10755001 chr2L_10755001 RAL-440 192 chr2L 10756390 10756406 chr2L 10756737 10756773 6 354 6.0 5.0 5.5 0.9 383 chr2L 10756390 intergenic CG17124 - chr2L 10756582 intergenic CG17124 - chr2L 10756773 intergenic CG17124 - chr2L_6_10755001 chr2L_10755001 RAL-440 193 chr2L 10793309 10793313 chr2L 10793401 10793411 4 96 1.0 1.0 1.0 2.0 102 chr2L 10793309 intron CG31869 - chr2L 10793360 intron CG31869 - chr2L 10793411 intron CG31869 - chr2L_4_10790001 chr2L_10790001 RAL-440 194 chr2L 10798756 10798792 chr2L 10798849 10798877 7 88 4.5 4.0 4.2 1.3 121 chr2L 10798756 intron CG31869 - chr2L 10798816 intron CG31869 - chr2L 10798877 intron CG31869 - chr2L_7_10795001 chr2L_10795001 RAL-440 195 chr2L 10862857 10862869 chr2L 10864464 10864488 Rt1c 4 1612 3.5 4.5 4.0 0.8 1631 chr2L 10862857 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864488 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-440 196 chr2L 10874985 10875028 chr2L 10875081 10875116 10 95 5.5 3.0 4.2 1.9 131 chr2L 10874985 intergenic not near genes chr2L 10875050 intergenic not near genes chr2L 10875116 intergenic not near genes chr2L_10_10875001 chr2L_10875001 RAL-440 197 chr2L 10912982 10912995 chr2L 10913068 10913092 8 91 7.5 4.0 5.8 1.2 110 chr2L 10912982 intergenic not near genes chr2L 10913037 intergenic not near genes chr2L 10913092 intergenic not near genes chr2L_8_10910001 chr2L_10910001 RAL-440 198 chr2L 10919787 10919832 chr2L 10919896 10919927 9 98 1.5 5.5 3.5 2.0 140 chr2L 10919787 intron dpr2 - chr2L 10919857 intron dpr2 - chr2L 10919927 intron dpr2 - chr2L_9_10915001 chr2L_10915001 RAL-440 199 chr2L 10946960 10946968 chr2L 10956162 10956187 roo 5 9220 6.0 6.5 6.2 0.7 9227 chr2L 10946960 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956187 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-440 200 chr2L 11056069 11056105 chr2L 11056164 11056209 7 97 1.0 4.0 2.5 2.0 140 chr2L 11056069 intron Samuel - chr2L 11056139 intron Samuel - chr2L 11056209 intron Samuel - chr2L_7_11055001 chr2L_11055001 RAL-440 201 chr2L 11056550 11056599 chr2L 11056649 11056700 9 95 0.5 2.5 1.5 3.6 150 chr2L 11056550 intron Samuel - chr2L 11056625 intron Samuel - chr2L 11056700 intron Samuel - chr2L_9_11055001 chr2L_11055001 RAL-440 202 chr2L 11142498 11142521 chr2L 11142600 11142613 4 99 2.0 2.5 2.2 1.2 115 chr2L 11142498 intron Gyc32E - chr2L 11142556 intron Gyc32E - chr2L 11142613 intron Gyc32E - chr2L_4_11140001 chr2L_11140001 RAL-440 203 chr2L 11142524 11142534 chr2L 11142598 11142619 4 90 1.5 2.0 1.8 1.4 95 chr2L 11142524 intron Gyc32E - chr2L 11142572 intron Gyc32E - chr2L 11142619 intron Gyc32E - chr2L_4_11140001 chr2L_11140001 RAL-440 204 chr2L 11145776 11145804 chr2L 11145886 11145916 10 116 0.0 3.5 1.8 3.6 140 chr2L 11145776 intron Gyc32E - chr2L 11145846 intron Gyc32E - chr2L 11145916 intron Gyc32E - chr2L_10_11145001 chr2L_11145001 RAL-440 205 chr2L 11183772 11183812 chr2L 11183883 11183925 7 113 3.5 1.0 2.2 2.2 153 chr2L 11183772 intron Ca-beta - chr2L 11183848 intron Ca-beta - chr2L 11183925 intron Ca-beta - chr2L_7_11180001 chr2L_11180001 RAL-440 206 chr2L 11339720 11339731 chr2L 11339816 11339816 4 93 3.5 2.0 2.8 1.1 96 chr2L 11339720 intergenic not near genes chr2L 11339768 intergenic not near genes chr2L 11339816 intergenic not near genes chr2L_4_11335001 chr2L_11335001 RAL-440 207 chr2L 11380609 11380624 chr2L 11380701 11380707 4 90 1.0 4.0 2.5 1.1 98 chr2L 11380609 intergenic not near genes chr2L 11380658 intergenic not near genes chr2L 11380707 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-440 208 chr2L 11399516 11399533 chr2L 11399603 11399604 6 85 1.0 0.0 0.5 4.0 88 chr2L 11399516 intergenic not near genes chr2L 11399560 intergenic not near genes chr2L 11399604 intergenic not near genes chr2L_6_11395001 chr2L_11395001 RAL-440 209 chr2L 11537176 11537211 chr2L 11537272 11537275 6 82 1.5 3.0 2.2 1.9 99 chr2L 11537176 intergenic CG43438 + chr2L 11537226 intergenic CG43438 + chr2L 11537275 intergenic CG43438 + chr2L_6_11535001 chr2L_11535001 RAL-440 210 chr2L 11540597 11540607 chr2L 11548002 11548028 Tabor 5 7416 1.5 4.0 2.8 1.3 7431 chr2L 11540597 intergenic not near genes chr2L 11544312 intergenic not near genes chr2L 11548028 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-440 211 chr2L 11563636 11563665 chr2L 11568841 11568874 copia 7 5212 1.5 5.5 3.5 1.6 5238 chr2L 11563636 intergenic not near genes chr2L 11566255 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-440 212 chr2L 11713497 11713517 chr2L 11720981 11721005 blood 4 7484 5.5 6.5 6.0 0.6 7508 chr2L 11713497 intergenic not near genes chr2L 11717251 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-440 213 chr2L 11713518 11713540 chr2L 11720974 11721016 blood 10 7472 3.0 6.0 4.5 1.8 7498 chr2L 11713518 intergenic not near genes chr2L 11717267 intergenic not near genes chr2L 11721016 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-440 214 chr2L 11736548 11736574 chr2L 11736628 11736663 8 88 2.0 6.0 4.0 1.6 115 chr2L 11736548 5` UTR CR44145 + chr2L 11736606 5` UTR CR44145 + chr2L 11736663 5` UTR CR44145 + chr2L_8_11735001 chr2L_11735001 RAL-440 215 chr2L 11826943 11826969 chr2L 11827021 11827036 13 84 1.5 2.5 2.0 4.3 93 chr2L 11826943 intron Pde1c - chr2L 11826990 intron Pde1c - chr2L 11827036 intron Pde1c - chr2L_13_11825001 chr2L_11825001 RAL-440 216 chr2L 11863132 11863149 chr2L 11863212 11863237 7 86 6.5 4.0 5.2 1.1 105 chr2L 11863132 intron Pde1c - chr2L 11863184 intron Pde1c - chr2L 11863237 intron Pde1c - chr2L_7_11860001 chr2L_11860001 RAL-440 217 chr2L 11892538 11892813 chr2L 11892636 11892912 15 96 5.0 4.0 4.5 2.7 374 chr2L 11892538 intron Pde1c - chr2L 11892725 intron Pde1c - chr2L 11892912 intron Pde1c - chr2L_15_11890001 chr2L_11890001 RAL-440 218 chr2L 11941727 11941752 chr2L 11941839 11941883 10 127 4.5 5.5 5.0 1.7 156 chr2L 11941727 intergenic not near genes chr2L 11941805 intergenic not near genes chr2L 11941883 intergenic not near genes chr2L_10_11940001 chr2L_11940001 RAL-440 219 chr2L 12067315 12067358 chr2L 12074384 12074430 297 10 7069 3.0 3.5 3.2 2.4 7115 chr2L 12067315 intergenic not near genes chr2L 12070872 intergenic not near genes chr2L 12074430 intergenic not near genes chr2L_10_12070001 chr2L_12070001 RAL-440 220 chr2L 12132708 12132744 chr2L 12132810 12132844 5 101 0.0 2.0 1.0 2.5 136 chr2L 12132708 intron rho-6 - chr2L 12132776 intron rho-6 - chr2L 12132844 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-440 221 chr2L 12141168 12141212 chr2L 12141264 12141307 7 95 2.5 0.0 1.2 3.2 139 chr2L 12141168 intergenic not near genes chr2L 12141238 intergenic not near genes chr2L 12141307 intergenic not near genes chr2L_7_12140001 chr2L_12140001 RAL-440 222 chr2L 12175830 12175847 chr2L 12175899 12175949 4 85 0.0 0.5 0.2 3.3 119 chr2L 12175830 intron,intron aret +,atilla - chr2L 12175890 intron,intron aret +,atilla - chr2L 12175949 intron,intron aret +,atilla - chr2L_4_12175001 chr2L_12175001 RAL-440 223 chr2L 12254011 12254035 chr2L 12254123 12254146 5 112 6.5 0.0 3.2 1.2 135 chr2L 12254011 intron aret + chr2L 12254078 intron aret + chr2L 12254146 intron aret + chr2L_5_12250001 chr2L_12250001 RAL-440 224 chr2L 12272167 12272196 chr2L 12272243 12272243 8 80 1.0 4.5 2.8 2.1 76 chr2L 12272167 intron aret + chr2L 12272205 intron aret + chr2L 12272243 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-440 225 chr2L 12366846 12366886 chr2L 12366950 12366992 4 104 1.5 1.5 1.5 1.6 146 chr2L 12366846 intron bru-2 + chr2L 12366919 intron bru-2 + chr2L 12366992 intron bru-2 + chr2L_4_12365001 chr2L_12365001 RAL-440 226 chr2L 12424358 12424380 chr2L 12424440 12424473 7 89 0.0 1.5 0.8 3.9 115 chr2L 12424358 intergenic not near genes chr2L 12424416 intergenic CG6405 + chr2L 12424473 intergenic CG6405 + chr2L_7_12420001 chr2L_12420001 RAL-440 227 chr2L 12487884 12487919 chr2L 12487966 12488013 11 91 2.5 5.5 4.0 2.2 129 chr2L 12487884 intron bun - chr2L 12487948 intron bun - chr2L 12488013 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-440 228 chr2L 12527686 12527693 chr2L 12528251 12528254 4 573 9.0 6.0 7.5 0.5 568 chr2L 12527686 intron bun - chr2L 12527970 intron bun - chr2L 12528254 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-440 229 chr2L 12529248 12529440 chr2L 12529379 12529526 14 108 0.5 0.5 0.5 9.3 278 chr2L 12529248 intron bun - chr2L 12529387 intron bun - chr2L 12529526 intron bun - chr2L_14_12525001 chr2L_12525001 RAL-440 230 chr2L 12558309 12558350 chr2L 12565458 12565483 HMS-Beagle 11 7141 1.0 1.5 1.2 5.0 7174 chr2L 12558309 intergenic not near genes chr2L 12561896 intergenic not near genes chr2L 12565483 intergenic not near genes chr2L_11_12560001 chr2L_12560001 RAL-440 231 chr2L 12653777 12653802 chr2L 12653909 12653921 4 129 3.5 2.0 2.8 1.1 144 chr2L 12653777 intergenic not near genes chr2L 12653849 intergenic not near genes chr2L 12653921 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-440 232 chr2L 12699867 12699877 chr2L 12699926 12699934 5 61 2.5 1.0 1.8 1.8 67 chr2L 12699867 exon CG17036 - chr2L 12699900 exon CG17036 - chr2L 12699934 exon CG17036 - chr2L_5_12695001 chr2L_12695001 RAL-440 233 chr2L 12728912 12728944 chr2L 12729169 12729204 pogo 7 260 7.0 2.5 4.8 1.2 292 chr2L 12728912 intron MRP + chr2L 12729058 intron MRP + chr2L 12729204 exon MRP + chr2L_7_12725001 chr2L_12725001 RAL-440 234 chr2L 12731042 12731078 chr2L 12735826 12735857 F-element 5 4784 7.5 1.5 4.5 0.9 4815 chr2L 12731042 intron MRP + chr2L 12733450 intron MRP + chr2L 12735857 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-440 235 chr2L 12736653 12736705 chr2L 12736747 12736785 11 85 5.5 5.0 5.2 1.8 132 chr2L 12736653 intron MRP + chr2L 12736719 intron MRP + chr2L 12736785 intron MRP + chr2L_11_12735001 chr2L_12735001 RAL-440 236 chr2L 12739166 12739205 chr2L 12743956 12743991 Doc 11 4793 3.5 6.5 5.0 1.8 4825 chr2L 12739166 exon MRP + chr2L 12741578 intron MRP + chr2L 12743991 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-440 237 chr2L 12751290 12751336 chr2L 12751393 12751419 7 97 1.5 2.5 2.0 2.3 129 chr2L 12751290 intergenic not near genes chr2L 12751354 intergenic not near genes chr2L 12751419 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-440 238 chr2L 12763811 12763872 chr2L 12764039 12764092 BS 4 224 0.0 0.0 0.0 4.0 281 chr2L 12763811 intergenic not near genes chr2L 12763952 intergenic not near genes chr2L 12764092 intergenic not near genes chr2L_4_12760001 chr2L_12760001 RAL-440 239 chr2L 12791593 12791626 chr2L 12795288 12795313 F-element 6 3690 4.0 7.0 5.5 0.9 3720 chr2L 12791593 intergenic not near genes chr2L 12793453 intergenic not near genes chr2L 12795313 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-440 240 chr2L 12807434 12807470 chr2L 12807532 12807563 10 90 2.0 2.0 2.0 3.3 129 chr2L 12807434 intergenic CR43818 - chr2L 12807498 intergenic CR43818 - chr2L 12807563 intergenic CR43818 - chr2L_10_12805001 chr2L_12805001 RAL-440 241 chr2L 12855586 12855620 chr2L 12856096 12856123 5 507 18.0 23.0 20.5 0.2 537 chr2L 12855586 intergenic not near genes chr2L 12855854 intergenic not near genes chr2L 12856123 intergenic not near genes chr2L_5_12855001 chr2L_12855001 RAL-440 242 chr2L 12861692 12861731 chr2L 12863162 12863196 hobo 10 1464 3.0 3.0 3.0 2.5 1504 chr2L 12861692 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-440 243 chr2L 12905463 12905496 chr2L 12905565 12905596 6 100 4.5 3.5 4.0 1.2 133 chr2L 12905463 intergenic not near genes chr2L 12905530 intergenic not near genes chr2L 12905596 intergenic not near genes chr2L_6_12905001 chr2L_12905001 RAL-440 244 chr2L 12933850 12933883 chr2L 12941330 12941353 blood 9 7473 4.0 6.0 5.0 1.5 7503 chr2L 12933850 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941353 intergenic not near genes chr2L_9_12935001 chr2L_12935001 RAL-440 245 chr2L 12945956 12946008 chr2L 12946055 12946084 7 80 3.0 1.0 2.0 2.3 128 chr2L 12945956 intergenic not near genes chr2L 12946020 intergenic not near genes chr2L 12946084 intergenic not near genes chr2L_7_12945001 chr2L_12945001 RAL-440 246 chr2L 12963782 12963820 chr2L 12963897 12963917 7 114 3.5 4.5 4.0 1.4 135 chr2L 12963782 intergenic not near genes chr2L 12963850 intergenic not near genes chr2L 12963917 intergenic not near genes chr2L_7_12960001 chr2L_12960001 RAL-440 247 chr2L 13152225 13152251 chr2L 13152309 13152339 9 88 9.0 6.5 7.8 1.0 114 chr2L 13152225 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152339 intergenic not near genes chr2L_9_13150001 chr2L_13150001 RAL-440 248 chr2L 13187419 13187468 chr2L 13187527 13187564 13 103 1.0 4.5 2.8 3.4 145 chr2L 13187419 intron CG16974 - chr2L 13187492 intron CG16974 - chr2L 13187564 intron CG16974 - chr2L_13_13185001 chr2L_13185001 RAL-440 249 chr2L 13304583 13304599 chr2L 13304693 13304713 8 117 4.0 3.0 3.5 1.8 130 chr2L 13304583 3` UTR CG43778 - chr2L 13304648 3` UTR CG43778 - chr2L 13304713 3` UTR CG43778 - chr2L_8_13300001 chr2L_13300001 RAL-440 250 chr2L 13341787 13341796 chr2L 13342394 13342417 4 617 1.5 3.5 2.5 1.1 630 chr2L 13341787 intergenic not near genes chr2L 13342102 intergenic not near genes chr2L 13342417 intergenic not near genes chr2L_4_13340001 chr2L_13340001 RAL-440 251 chr2L 13405632 13405683 chr2L 13410443 13410478 Doc 19 4808 2.0 3.0 2.5 5.4 4846 chr2L 13405632 exon CG7110 + chr2L 13408055 intron CG7110 + chr2L 13410478 intron CG7110 + chr2L_19_13405001 chr2L_13405001 RAL-440 252 chr2L 13422493 13422503 chr2L 13422582 13422600 5 89 0.0 8.5 4.2 1.0 107 chr2L 13422493 intron CG42784 + chr2L 13422546 intron CG42784 + chr2L 13422600 intron CG42784 + chr2L_5_13420001 chr2L_13420001 RAL-440 253 chr2L 13440235 13440261 chr2L 13440334 13440373 12 103 5.5 4.0 4.8 2.1 138 chr2L 13440235 intron,3` UTR CG42784 +,CR45683 - chr2L 13440304 intron,3` UTR CG42784 +,CR45683 - chr2L 13440373 intron,3` UTR CG42784 +,CR45683 - chr2L_12_13440001 chr2L_13440001 RAL-440 254 chr2L 13481450 13481475 chr2L 13482062 13482085 jockey 8 618 5.5 8.5 7.0 1.0 635 chr2L 13481450 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482085 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-440 255 chr2L 13491903 13491942 chr2L 13492046 13492051 10 135 3.5 0.0 1.8 3.6 148 chr2L 13491903 intron CG42784 + chr2L 13491977 intron CG42784 + chr2L 13492051 intron CG42784 + chr2L_10_13490001 chr2L_13490001 RAL-440 256 chr2L 13522270 13522288 chr2L 13527593 13527601 Transpac 4 5321 4.5 7.5 6.0 0.6 5331 chr2L 13522270 intron B4 - chr2L 13524936 intron B4 - chr2L 13527601 intron B4 - chr2L_4_13520001 chr2L_13520001 RAL-440 257 chr2L 13560402 13560419 chr2L 13565231 13565260 F-element 6 4837 3.5 3.5 3.5 1.3 4858 chr2L 13560402 intron kuz + chr2L 13562831 intron kuz + chr2L 13565260 intron kuz + chr2L_6_13560001 chr2L_13560001 RAL-440 258 chr2L 13693007 13693040 chr2L 13693082 13693133 5 82 5.5 8.0 6.8 0.6 126 chr2L 13693007 intron CG31814 - chr2L 13693070 intron CG31814 - chr2L 13693133 intron CG31814 - chr2L_5_13690001 chr2L_13690001 RAL-440 259 chr2L 13761796 13761808 chr2L 13762915 13762933 Doc 4 1121 11.5 4.0 7.8 0.5 1137 chr2L 13761796 intron TM9SF4 + chr2L 13762364 intron TM9SF4 + chr2L 13762933 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-440 260 chr2L 13761825 13761834 chr2L 13762908 13762945 Doc 5 1109 5.0 4.0 4.5 0.9 1120 chr2L 13761825 intron TM9SF4 + chr2L 13762385 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-440 261 chr2L 13842559 13842591 chr2L 13842656 13842682 6 92 0.5 2.0 1.2 2.7 123 chr2L 13842559 intron CenG1A + chr2L 13842620 intron CenG1A + chr2L 13842682 intron CenG1A + chr2L_6_13840001 chr2L_13840001 RAL-440 262 chr2L 13853078 13853115 chr2L 13862233 13862248 roo 16 9158 5.0 2.0 3.5 3.6 9170 chr2L 13853078 intron CenG1A + chr2L 13857663 intron CenG1A + chr2L 13862248 intron CenG1A + chr2L_16_13855001 chr2L_13855001 RAL-440 263 chr2L 14012407 14012453 chr2L 14012506 14012553 17 89 5.0 5.0 5.0 2.8 146 chr2L 14012407 intergenic not near genes chr2L 14012480 intergenic not near genes chr2L 14012553 intergenic bgm + chr2L_17_14010001 chr2L_14010001 RAL-440 264 chr2L 14017750 14017786 chr2L 14017856 14017878 7 105 4.5 2.0 3.2 1.7 128 chr2L 14017750 intron bgm + chr2L 14017814 intron bgm + chr2L 14017878 intron bgm + chr2L_7_14015001 chr2L_14015001 RAL-440 265 chr2L 14160668 14160718 chr2L 14160774 14160824 9 101 0.5 1.5 1.0 4.5 156 chr2L 14160668 intergenic CG17341 +,CG43332 - chr2L 14160746 intergenic CG17341 +,CG43332 - chr2L 14160824 intergenic CG17341 +,CG43332 - chr2L_9_14160001 chr2L_14160001 RAL-440 266 chr2L 14378631 14378679 chr2L 14378726 14378767 14 94 3.5 0.0 1.8 5.0 136 chr2L 14378631 3` UTR ppk - chr2L 14378699 3` UTR ppk - chr2L 14378767 3` UTR ppk - chr2L_14_14375001 chr2L_14375001 RAL-440 267 chr2L 14429413 14429454 chr2L 14429514 14429521 13 93 3.0 1.5 2.2 4.1 108 chr2L 14429413 3` UTR CR44732 - chr2L 14429467 3` UTR CR44732 - chr2L 14429521 3` UTR CR44732 - chr2L_13_14425001 chr2L_14425001 RAL-440 268 chr2L 14564218 14564231 chr2L 14564269 14564298 4 69 3.0 3.0 3.0 1.0 80 chr2L 14564218 intergenic CG3473 - chr2L 14564258 intergenic not near genes chr2L 14564298 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-440 269 chr2L 14565876 14565902 chr2L 14565965 14565988 5 93 1.0 4.5 2.8 1.3 112 chr2L 14565876 intergenic not near genes chr2L 14565932 intergenic not near genes chr2L 14565988 intergenic not near genes chr2L_5_14565001 chr2L_14565001 RAL-440 270 chr2L 14570553 14570587 chr2L 14570875 14570909 7 326 4.0 2.5 3.2 1.7 356 chr2L 14570553 intergenic not near genes chr2L 14570731 intergenic not near genes chr2L 14570909 intergenic not near genes chr2L_7_14570001 chr2L_14570001 RAL-440 271 chr2L 14588363 14588420 chr2L 14588536 14588559 16 166 4.0 4.0 4.0 3.2 196 chr2L 14588363 intergenic CG42680 - chr2L 14588461 intergenic CG42680 - chr2L 14588559 intergenic CG42680 - chr2L_16_14585001 chr2L_14585001 RAL-440 272 chr2L 14621372 14621402 chr2L 14621474 14621503 12 108 1.5 1.0 1.2 5.5 131 chr2L 14621372 intron osp - chr2L 14621438 intron osp - chr2L 14621503 intron osp - chr2L_12_14620001 chr2L_14620001 RAL-440 273 chr2L 14642566 14642600 chr2L 14651736 14651770 roo 14 9175 2.0 6.0 4.0 2.8 9204 chr2L 14642566 intron osp - chr2L 14647168 intron osp - chr2L 14651770 intron osp - chr2L_14_14645001 chr2L_14645001 RAL-440 274 chr2L 14707201 14707239 chr2L 14707327 14707360 25 131 6.0 3.5 4.8 4.3 159 chr2L 14707201 intergenic not near genes chr2L 14707280 intergenic not near genes chr2L 14707360 intergenic not near genes chr2L_25_14705001 chr2L_14705001 RAL-440 275 chr2L 14707575 14707616 chr2L 14708597 14708636 12 1021 3.5 20.0 11.8 0.9 1061 chr2L 14707575 intergenic not near genes chr2L 14708106 intergenic not near genes chr2L 14708636 intergenic not near genes chr2L_12_14705001 chr2L_14705001 RAL-440 276 chr2L 14706731 14706758 chr2L 14708985 14709008 6 2252 20.0 29.5 24.8 0.2 2277 chr2L 14706731 intergenic not near genes chr2L 14707870 intergenic not near genes chr2L 14709008 intergenic not near genes chr2L_6_14705001 chr2L_14705001 RAL-440 277 chr2L 14765223 14765238 chr2L 14765321 14765323 7 92 9.5 4.0 6.8 0.9 100 chr2L 14765223 intergenic not near genes chr2L 14765273 intergenic not near genes chr2L 14765323 intergenic not near genes chr2L_7_14765001 chr2L_14765001 RAL-440 278 chr2L 14765239 14765271 chr2L 14765320 14765351 11 83 2.0 4.0 3.0 2.8 112 chr2L 14765239 intergenic not near genes chr2L 14765295 intergenic not near genes chr2L 14765351 intergenic not near genes chr2L_11_14765001 chr2L_14765001 RAL-440 279 chr2L 14923084 14923134 chr2L 14923183 14923233 12 92 4.0 2.0 3.0 3.0 149 chr2L 14923084 intron CG42313 - chr2L 14923158 intron CG42313 - chr2L 14923233 intron CG42313 - chr2L_12_14920001 chr2L_14920001 RAL-440 280 chr2L 14945420 14945456 chr2L 14945532 14945559 9 106 2.0 0.5 1.2 4.1 139 chr2L 14945420 intron CG42313 - chr2L 14945490 intron CG42313 - chr2L 14945559 intron CG42313 - chr2L_9_14945001 chr2L_14945001 RAL-440 281 chr2L 14984370 14984391 chr2L 14991987 14992007 opus 4 7619 6.5 5.5 6.0 0.6 7637 chr2L 14984370 intron mol - chr2L 14988188 intron mol - chr2L 14992007 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-440 282 chr2L 15013147 15013180 chr2L 15013256 15013291 5 110 0.0 1.5 0.8 2.8 144 chr2L 15013147 intergenic CR43856 - chr2L 15013219 intergenic not near genes chr2L 15013291 intergenic not near genes chr2L_5_15010001 chr2L_15010001 RAL-440 283 chr2L 15053123 15053135 chr2L 15053205 15053227 6 88 0.0 3.5 1.8 2.1 104 chr2L 15053123 intron ck - chr2L 15053175 intron ck - chr2L 15053227 intron ck - chr2L_6_15050001 chr2L_15050001 RAL-440 284 chr2L 15077881 15078081 chr2L 15077985 15078187 9 97 9.5 4.5 7.0 1.1 306 chr2L 15077881 intron CG15270 + chr2L 15078034 intron CG15270 + chr2L 15078187 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-440 285 chr2L 15080889 15080935 chr2L 15080993 15081051 7 106 2.5 1.0 1.8 2.5 162 chr2L 15080889 intron CG15270 + chr2L 15080970 intron CG15270 + chr2L 15081051 intron CG15270 + chr2L_7_15080001 chr2L_15080001 RAL-440 286 chr2L 15083947 15083962 chr2L 15084902 15084934 5 962 8.5 2.0 5.2 0.8 987 chr2L 15083947 intron CG15270 + chr2L 15084440 intron CG15270 + chr2L 15084934 intron CG15270 + chr2L_5_15080001 chr2L_15080001 RAL-440 287 chr2L 15098524 15098541 chr2L 15098622 15098625 4 93 6.5 5.5 6.0 0.6 101 chr2L 15098524 intergenic not near genes chr2L 15098574 intergenic not near genes chr2L 15098625 intergenic not near genes chr2L_4_15095001 chr2L_15095001 RAL-440 288 chr2L 15122765 15122792 chr2L 15122854 15122892 6 96 2.0 0.5 1.2 2.7 127 chr2L 15122765 intergenic not near genes chr2L 15122828 intergenic not near genes chr2L 15122892 intergenic not near genes chr2L_6_15120001 chr2L_15120001 RAL-440 289 chr2L 15179517 15179542 chr2L 15179595 15179630 4 86 3.5 8.5 6.0 0.6 113 chr2L 15179517 intron CG4168 - chr2L 15179574 intron CG4168 - chr2L 15179630 intron CG4168 - chr2L_4_15175001 chr2L_15175001 RAL-440 290 chr2L 15204299 15204312 chr2L 15204574 15204593 4 278 0.5 3.5 2.0 1.3 294 chr2L 15204299 intergenic CR43357 + chr2L 15204446 intergenic CR43357 + chr2L 15204593 intergenic not near genes chr2L_4_15200001 chr2L_15200001 RAL-440 291 chr2L 15226388 15226395 chr2L 15226447 15226455 5 70 2.5 5.5 4.0 1.0 67 chr2L 15226388 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226455 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-440 292 chr2L 15252961 15253000 chr2L 15253060 15253096 8 94 3.5 4.5 4.0 1.6 135 chr2L 15252961 intron dao + chr2L 15253028 intron dao + chr2L 15253096 intron dao + chr2L_8_15250001 chr2L_15250001 RAL-440 293 chr2L 15343518 15343564 chr2L 15343623 15343648 7 96 1.0 0.0 0.5 4.7 130 chr2L 15343518 intergenic not near genes chr2L 15343583 intergenic not near genes chr2L 15343648 intergenic not near genes chr2L_7_15340001 chr2L_15340001 RAL-440 294 chr2L 15446041 15446083 chr2L 15453518 15453538 blood 5 7474 2.0 2.5 2.2 1.6 7497 chr2L 15446041 intergenic not near genes chr2L 15449790 intergenic not near genes chr2L 15453538 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-440 295 chr2L 15482562 15482604 chr2L 15482718 15482758 7 150 2.0 4.0 3.0 1.8 196 chr2L 15482562 intergenic not near genes chr2L 15482660 intergenic not near genes chr2L 15482758 intergenic not near genes chr2L_7_15480001 chr2L_15480001 RAL-440 296 chr2L 15514303 15514326 chr2L 15514407 15514416 5 98 6.0 7.5 6.8 0.6 113 chr2L 15514303 intergenic not near genes chr2L 15514360 intergenic not near genes chr2L 15514416 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-440 297 chr2L 15535875 15535917 chr2L 15535975 15536013 15 99 3.0 4.0 3.5 3.3 138 chr2L 15535875 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536013 intergenic not near genes chr2L_15_15535001 chr2L_15535001 RAL-440 298 chr2L 15586390 15586440 chr2L 15593462 15593511 297 9 7064 2.0 5.5 3.8 1.9 7121 chr2L 15586390 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593511 intergenic not near genes chr2L_9_15585001 chr2L_15585001 RAL-440 299 chr2L 15636664 15636684 chr2L 15636755 15636775 4 89 3.5 0.0 1.8 1.4 111 chr2L 15636664 intergenic not near genes chr2L 15636720 intergenic not near genes chr2L 15636775 intergenic not near genes chr2L_4_15635001 chr2L_15635001 RAL-440 300 chr2L 15790188 15790210 chr2L 15790271 15790306 5 88 3.5 5.0 4.2 1.0 118 chr2L 15790188 intergenic CG18109 + chr2L 15790247 intergenic CG18109 + chr2L 15790306 intergenic CG18109 + chr2L_5_15790001 chr2L_15790001 RAL-440 301 chr2L 15830343 15830381 chr2L 15830530 15830566 10 179 0.5 2.0 1.2 4.5 223 chr2L 15830343 intergenic not near genes chr2L 15830454 intergenic not near genes chr2L 15830566 intergenic not near genes chr2L_10_15830001 chr2L_15830001 RAL-440 302 chr2L 15956006 15956025 chr2L 15957492 15957492 hobo 5 1481 9.0 4.0 6.5 0.7 1486 chr2L 15956006 intron beat-Ib - chr2L 15956749 intron beat-Ib - chr2L 15957492 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-440 303 chr2L 15956030 15956057 chr2L 15957488 15957525 hobo 8 1466 5.0 3.0 4.0 1.6 1495 chr2L 15956030 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-440 304 chr2L 16005592 16005630 chr2L 16005677 16005727 8 92 3.0 0.5 1.8 2.9 135 chr2L 16005592 intron beat-Ic + chr2L 16005660 intron beat-Ic + chr2L 16005727 intron beat-Ic + chr2L_8_16005001 chr2L_16005001 RAL-440 305 chr2L 16008683 16008724 chr2L 16008769 16008809 4 91 2.0 1.0 1.5 1.6 126 chr2L 16008683 intron beat-Ic + chr2L 16008746 intron beat-Ic + chr2L 16008809 intron beat-Ic + chr2L_4_16005001 chr2L_16005001 RAL-440 306 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 18.5 20.0 19.2 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-440 307 chr2L 16161585 16161619 chr2L 16161737 16161784 16 158 2.5 4.0 3.2 3.8 199 chr2L 16161585 intergenic not near genes chr2L 16161684 intergenic not near genes chr2L 16161784 intergenic not near genes chr2L_16_16160001 chr2L_16160001 RAL-440 308 chr2L 16197101 16197153 chr2L 16197797 16197849 13 688 1.5 5.0 3.2 3.1 748 chr2L 16197101 intergenic not near genes chr2L 16197475 intergenic not near genes chr2L 16197849 intergenic not near genes chr2L_13_16195001 chr2L_16195001 RAL-440 309 chr2L 16224808 16224831 chr2L 16224914 16224924 4 108 2.5 1.0 1.8 1.4 116 chr2L 16224808 intergenic not near genes chr2L 16224866 intergenic not near genes chr2L 16224924 intergenic not near genes chr2L_4_16220001 chr2L_16220001 RAL-440 310 chr2L 16243706 16243839 chr2L 16243783 16243951 12 105 3.5 3.0 3.2 2.9 245 chr2L 16243706 exon CG42818 + chr2L 16243828 exon CG42818 + chr2L 16243951 exon CG42818 + chr2L_12_16240001 chr2L_16240001 RAL-440 311 chr2L 16263982 16264019 chr2L 16264079 16264100 8 95 5.0 3.5 4.2 1.5 118 chr2L 16263982 3` UTR crp - chr2L 16264041 3` UTR crp - chr2L 16264100 3` UTR crp - chr2L_8_16260001 chr2L_16260001 RAL-440 312 chr2L 16354763 16354784 chr2L 16354871 16354881 6 106 3.0 3.0 3.0 1.5 118 chr2L 16354763 intergenic CaBP1 -,CG4455 + chr2L 16354822 intergenic CaBP1 -,CG4455 + chr2L 16354881 intergenic CaBP1 -,CG4455 + chr2L_6_16350001 chr2L_16350001 RAL-440 313 chr2L 16363925 16363974 chr2L 16364191 16364230 7 262 0.5 3.0 1.8 2.5 305 chr2L 16363925 intergenic not near genes chr2L 16364078 intergenic not near genes chr2L 16364230 intergenic not near genes chr2L_7_16360001 chr2L_16360001 RAL-440 314 chr2L 16391785 16391832 chr2L 16391881 16391926 7 90 0.5 0.0 0.2 5.8 141 chr2L 16391785 intergenic not near genes chr2L 16391856 intergenic not near genes chr2L 16391926 intergenic not near genes chr2L_7_16390001 chr2L_16390001 RAL-440 315 chr2L 16511949 16511976 chr2L 16519174 16519203 HMS-Beagle 4 7223 3.5 8.0 5.8 0.6 7254 chr2L 16511949 intron CG5953 - chr2L 16515576 intron CG5953 - chr2L 16519203 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-440 316 chr2L 16633175 16633218 chr2L 16633262 16633306 6 92 2.0 0.0 1.0 3.0 131 chr2L 16633175 intron CG42389 + chr2L 16633240 intron CG42389 + chr2L 16633306 intron CG42389 + chr2L_6_16630001 chr2L_16630001 RAL-440 317 chr2L 16655625 16655652 chr2L 16656148 16656195 6 536 1.5 6.5 4.0 1.2 570 chr2L 16655625 intron CG42389 + chr2L 16655910 intron CG42389 + chr2L 16656195 intron CG42389 + chr2L_6_16655001 chr2L_16655001 RAL-440 318 chr2L 16697051 16697082 chr2L 16697264 16697283 6 205 4.0 0.5 2.2 1.9 232 chr2L 16697051 intron grp + chr2L 16697167 intron grp + chr2L 16697283 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-440 319 chr2L 16709060 16709101 chr2L 16709163 16709191 8 98 5.0 4.5 4.8 1.4 131 chr2L 16709060 intron CG31808 - chr2L 16709126 intron CG31808 - chr2L 16709191 intron CG31808 - chr2L_8_16705001 chr2L_16705001 RAL-440 320 chr2L 16721426 16721471 chr2L 16721533 16721583 10 103 1.5 2.5 2.0 3.3 157 chr2L 16721426 intron Cyt-c-p + chr2L 16721504 intron Cyt-c-p + chr2L 16721583 intron Cyt-c-p + chr2L_10_16720001 chr2L_16720001 RAL-440 321 chr2L 16722575 16722601 chr2L 16722681 16722706 7 102 2.0 0.0 1.0 3.5 131 chr2L 16722575 3` UTR Cyt-c-p + chr2L 16722640 3` UTR Cyt-c-p + chr2L 16722706 intergenic Cyt-c-p +,VhaSFD - chr2L_7_16720001 chr2L_16720001 RAL-440 322 chr2L 16764951 16764981 chr2L 16765050 16765081 6 97 5.0 4.5 4.8 1.0 130 chr2L 16764951 intergenic not near genes chr2L 16765016 intergenic not near genes chr2L 16765081 intergenic not near genes chr2L_6_16765001 chr2L_16765001 RAL-440 323 chr2L 16867008 16867039 chr2L 16867122 16867150 7 113 3.5 4.5 4.0 1.4 142 chr2L 16867008 intergenic not near genes chr2L 16867079 intergenic not near genes chr2L 16867150 intergenic not near genes chr2L_7_16865001 chr2L_16865001 RAL-440 324 chr2L 16889831 16889870 chr2L 16889924 16889968 7 97 2.0 1.0 1.5 2.8 137 chr2L 16889831 intron tweek + chr2L 16889900 intron tweek + chr2L 16889968 intron,5` UTR tweek +,CG42556 + chr2L_7_16885001 chr2L_16885001 RAL-440 325 chr2L 16952130 16952148 chr2L 16952222 16952241 4 96 0.5 5.5 3.0 1.0 111 chr2L 16952130 intergenic not near genes chr2L 16952186 intergenic not near genes chr2L 16952241 intergenic not near genes chr2L_4_16950001 chr2L_16950001 RAL-440 326 chr2L 16958096 16958135 chr2L 16962902 16962943 Doc 8 4803 2.5 3.0 2.8 2.1 4847 chr2L 16958096 intergenic not near genes chr2L 16960520 intergenic not near genes chr2L 16962943 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-440 327 chr2L 17000109 17000149 chr2L 17000242 17000291 11 137 4.5 7.5 6.0 1.6 182 chr2L 17000109 intergenic not near genes chr2L 17000200 intergenic not near genes chr2L 17000291 intergenic not near genes chr2L_11_17000001 chr2L_17000001 RAL-440 328 chr2L 17087376 17087397 chr2L 17087503 17087503 5 121 1.5 3.5 2.5 1.4 127 chr2L 17087376 intergenic CG12620 + chr2L 17087440 intergenic CG12620 + chr2L 17087503 intergenic CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-440 329 chr2L 17089513 17089520 chr2L 17089696 17089696 4 185 0.5 2.5 1.5 1.6 183 chr2L 17089513 intergenic CG12620 + chr2L 17089604 intergenic CG12620 + chr2L 17089696 intergenic not near genes chr2L_4_17085001 chr2L_17085001 RAL-440 330 chr2L 17089526 17089532 chr2L 17089693 17089716 5 179 0.5 2.5 1.5 2.0 190 chr2L 17089526 intergenic CG12620 + chr2L 17089621 intergenic CG12620 + chr2L 17089716 intergenic not near genes chr2L_5_17085001 chr2L_17085001 RAL-440 331 chr2L 17101023 17101040 chr2L 17101538 17101560 4 515 10.0 16.5 13.2 0.3 537 chr2L 17101023 intergenic not near genes chr2L 17101292 intergenic not near genes chr2L 17101560 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-440 332 chr2L 17157859 17157877 chr2L 17157940 17157965 6 90 4.5 4.5 4.5 1.1 106 chr2L 17157859 intron,intron CG34106 +,beat-IIIa + chr2L 17157912 intron,intron CG34106 +,beat-IIIa + chr2L 17157965 intron,intron CG34106 +,beat-IIIa + chr2L_6_17155001 chr2L_17155001 RAL-440 333 chr2L 17158734 17158750 chr2L 17158833 17158873 5 112 0.5 3.0 1.8 1.8 139 chr2L 17158734 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158804 intron,intron CG34106 +,beat-IIIa + chr2L 17158873 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-440 334 chr2L 17163591 17163638 chr2L 17163694 17163736 11 103 2.5 2.0 2.2 3.4 145 chr2L 17163591 intron,intron CG34106 +,beat-IIIa + chr2L 17163664 intron,intron CG34106 +,beat-IIIa + chr2L 17163736 intron,intron CG34106 +,beat-IIIa + chr2L_11_17160001 chr2L_17160001 RAL-440 335 chr2L 17167587 17167596 chr2L 17167818 17167856 pogo 4 246 3.0 4.0 3.5 0.9 269 chr2L 17167587 intron,intron CG34106 +,beat-IIIa + chr2L 17167722 intron,intron CG34106 +,beat-IIIa + chr2L 17167856 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-440 336 chr2L 17199171 17199180 chr2L 17200643 17200663 hobo 4 1482 6.5 3.0 4.8 0.7 1492 chr2L 17199171 intron beat-IIIc - chr2L 17199917 intron beat-IIIc - chr2L 17200663 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-440 337 chr2L 17208041 17208079 chr2L 17208153 17208192 13 105 4.0 7.0 5.5 2.0 151 chr2L 17208041 intron beat-IIIc - chr2L 17208116 intron beat-IIIc - chr2L 17208192 intron beat-IIIc - chr2L_13_17205001 chr2L_17205001 RAL-440 338 chr2L 17273190 17273228 chr2L 17277975 17277993 F-element 15 4786 5.0 6.5 5.8 2.2 4803 chr2L 17273190 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277993 intergenic not near genes chr2L_15_17275001 chr2L_17275001 RAL-440 339 chr2L 17353092 17353138 chr2L 17353195 17353227 8 98 1.5 3.0 2.2 2.5 135 chr2L 17353092 intergenic not near genes chr2L 17353160 intergenic not near genes chr2L 17353227 intergenic not near genes chr2L_8_17350001 chr2L_17350001 RAL-440 340 chr2L 17360013 17360048 chr2L 17360201 17360237 7 192 1.5 0.0 0.8 3.9 224 chr2L 17360013 intergenic not near genes chr2L 17360125 intergenic not near genes chr2L 17360237 intergenic not near genes chr2L_7_17360001 chr2L_17360001 RAL-440 341 chr2L 17425757 17425783 chr2L 17425897 17425926 5 143 3.5 3.5 3.5 1.1 169 chr2L 17425757 intron Dif - chr2L 17425842 intron Dif - chr2L 17425926 intron Dif - chr2L_5_17425001 chr2L_17425001 RAL-440 342 chr2L 17532907 17532946 chr2L 17533260 17533294 14 353 3.5 5.0 4.2 2.7 387 chr2L 17532907 intergenic not near genes chr2L 17533100 intergenic not near genes chr2L 17533294 intergenic not near genes chr2L_14_17530001 chr2L_17530001 RAL-440 343 chr2L 17537005 17537053 chr2L 17537128 17537179 17 119 4.0 2.0 3.0 4.2 174 chr2L 17537005 intergenic not near genes chr2L 17537092 intergenic not near genes chr2L 17537179 intergenic not near genes chr2L_17_17535001 chr2L_17535001 RAL-440 344 chr2L 17543579 17543622 chr2L 17543684 17543721 13 105 1.5 4.5 3.0 3.2 142 chr2L 17543579 intergenic not near genes chr2L 17543650 intergenic not near genes chr2L 17543721 intergenic not near genes chr2L_13_17540001 chr2L_17540001 RAL-440 345 chr2L 17623664 17623690 chr2L 17623900 17623940 7 245 8.0 4.0 6.0 1.0 276 chr2L 17623664 intergenic not near genes chr2L 17623802 intergenic not near genes chr2L 17623940 intergenic not near genes chr2L_7_17620001 chr2L_17620001 RAL-440 346 chr2L 17723779 17723794 chr2L 17723884 17723897 4 104 6.5 3.0 4.8 0.7 118 chr2L 17723779 intron CadN - chr2L 17723838 intron CadN - chr2L 17723897 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-440 347 chr2L 17727861 17727882 chr2L 17729338 17729351 hobo 5 1471 3.0 7.0 5.0 0.8 1490 chr2L 17727861 intron CadN - chr2L 17728606 intron CadN - chr2L 17729351 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-440 348 chr2L 17734873 17734901 chr2L 17734971 17734989 7 92 5.0 4.0 4.5 1.3 116 chr2L 17734873 intron CadN - chr2L 17734931 intron CadN - chr2L 17734989 intron CadN - chr2L_7_17730001 chr2L_17730001 RAL-440 349 chr2L 17790198 17790241 chr2L 17790301 17790335 8 95 1.0 3.5 2.2 2.5 137 chr2L 17790198 intron CadN2 - chr2L 17790266 intron CadN2 - chr2L 17790335 intron CadN2 - chr2L_8_17790001 chr2L_17790001 RAL-440 350 chr2L 17796013 17796045 chr2L 17796108 17796134 7 96 3.5 2.0 2.8 1.8 121 chr2L 17796013 intron CadN2 - chr2L 17796074 intron CadN2 - chr2L 17796134 intron CadN2 - chr2L_7_17795001 chr2L_17795001 RAL-440 351 chr2L 17828232 17828265 chr2L 17828356 17828373 8 117 3.0 3.5 3.2 1.9 141 chr2L 17828232 intron CadN2 - chr2L 17828302 intron CadN2 - chr2L 17828373 intron CadN2 - chr2L_8_17825001 chr2L_17825001 RAL-440 352 chr2L 17849640 17849672 chr2L 17849962 17849989 6 318 3.0 2.0 2.5 1.7 349 chr2L 17849640 intron CadN2 - chr2L 17849814 intron CadN2 - chr2L 17849989 intron CadN2 - chr2L_6_17845001 chr2L_17845001 RAL-440 353 chr2L 17855489 17855518 chr2L 17855578 17855612 6 91 5.0 3.0 4.0 1.2 123 chr2L 17855489 intron CadN2 - chr2L 17855550 intron CadN2 - chr2L 17855612 intron CadN2 - chr2L_6_17855001 chr2L_17855001 RAL-440 354 chr2L 17880575 17880596 chr2L 17880707 17880707 4 123 3.0 3.5 3.2 1.0 132 chr2L 17880575 intergenic not near genes chr2L 17880641 intergenic not near genes chr2L 17880707 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-440 355 chr2L 17911956 17911980 chr2L 17914138 17914164 pogo 4 2184 4.0 4.0 4.0 0.8 2208 chr2L 17911956 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914164 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-440 356 chr2L 17951941 17951979 chr2L 17953418 17953446 hobo 19 1480 4.0 1.5 2.8 5.0 1505 chr2L 17951941 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_19_17950001 chr2L_17950001 RAL-440 357 chr2L 17989986 17990011 chr2L 17990075 17990096 11 88 8.5 8.0 8.2 1.2 110 chr2L 17989986 intergenic Prosbeta5R2 + chr2L 17990041 intergenic Prosbeta5R2 + chr2L 17990096 intergenic Prosbeta5R2 + chr2L_11_17990001 chr2L_17990001 RAL-440 358 chr2L 17990012 17990025 chr2L 17990074 17990101 11 84 7.0 8.5 7.8 1.2 89 chr2L 17990012 intergenic Prosbeta5R2 + chr2L 17990056 intergenic Prosbeta5R2 + chr2L 17990101 intergenic Prosbeta5R2 + chr2L_11_17990001 chr2L_17990001 RAL-440 359 chr2L 17986755 17986772 chr2L 17991471 17991501 9 4721 27.0 40.5 33.8 0.3 4746 chr2L 17986755 exon CG5681 + chr2L 17989128 intergenic not near genes chr2L 17991501 3` UTR Prosbeta5R2 + chr2L_9_17985001 chr2L_17985001 RAL-440 360 chr2L 18026983 18027016 chr2L 18027320 18027365 12 348 4.0 3.0 3.5 2.7 382 chr2L 18026983 5` UTR rdo + chr2L 18027174 intron rdo + chr2L 18027365 intron rdo + chr2L_12_18025001 chr2L_18025001 RAL-440 361 chr2L 18040751 18040757 chr2L 18040818 18040846 4 83 0.5 1.0 0.8 2.2 95 chr2L 18040751 intron rdo + chr2L 18040798 intron rdo + chr2L 18040846 intron rdo + chr2L_4_18040001 chr2L_18040001 RAL-440 362 chr2L 18041426 18041460 chr2L 18041701 18041742 16 280 2.0 1.5 1.8 5.7 316 chr2L 18041426 intron rdo + chr2L 18041584 intron rdo + chr2L 18041742 intron rdo + chr2L_16_18040001 chr2L_18040001 RAL-440 363 chr2L 18051885 18051909 chr2L 18061026 18061046 roo 7 9153 3.5 4.5 4.0 1.4 9161 chr2L 18051885 intron rdo + chr2L 18056466 intron rdo + chr2L 18061046 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-440 364 chr2L 18110078 18110108 chr2L 18110196 18110211 4 111 2.5 4.0 3.2 1.0 133 chr2L 18110078 intergenic not near genes chr2L 18110144 intergenic not near genes chr2L 18110211 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-440 365 chr2L 18134822 18134864 chr2L 18135305 18135339 8 477 3.0 2.0 2.5 2.3 517 chr2L 18134822 exon kel - chr2L 18135080 intron kel - chr2L 18135339 intron kel - chr2L_8_18135001 chr2L_18135001 RAL-440 366 chr2L 18235065 18235093 chr2L 18235194 18235230 12 129 3.5 4.5 4.0 2.4 165 chr2L 18235065 intron CG42750 - chr2L 18235148 intron CG42750 - chr2L 18235230 intron CG42750 - chr2L_12_18235001 chr2L_18235001 RAL-440 367 chr2L 18245505 18245555 chr2L 18245679 18245718 19 167 5.5 4.0 4.8 3.3 213 chr2L 18245505 intron CG42750 - chr2L 18245612 intron CG42750 - chr2L 18245718 intron CG42750 - chr2L_19_18245001 chr2L_18245001 RAL-440 368 chr2L 18394753 18394786 chr2L 18394961 18394984 7 205 6.0 5.5 5.8 1.0 231 chr2L 18394753 intergenic not near genes chr2L 18394868 intergenic not near genes chr2L 18394984 intergenic not near genes chr2L_7_18390001 chr2L_18390001 RAL-440 369 chr2L 18408024 18408043 chr2L 18412814 18412842 Doc 8 4796 3.5 5.0 4.2 1.5 4818 chr2L 18408024 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412842 intergenic not near genes chr2L_8_18410001 chr2L_18410001 RAL-440 370 chr2L 18538551 18538595 chr2L 18538647 18538694 6 95 0.0 2.5 1.2 2.7 143 chr2L 18538551 intron Pde11 - chr2L 18538622 intron Pde11 - chr2L 18538694 intron Pde11 - chr2L_6_18535001 chr2L_18535001 RAL-440 371 chr2L 18561547 18561577 chr2L 18561654 18561689 10 105 4.5 4.0 4.2 1.9 142 chr2L 18561547 intron Pde11 - chr2L 18561618 intron Pde11 - chr2L 18561689 intron Pde11 - chr2L_10_18560001 chr2L_18560001 RAL-440 372 chr2L 18568306 18568332 chr2L 18568406 18568419 9 96 4.5 5.0 4.8 1.6 113 chr2L 18568306 intron Pde11 - chr2L 18568362 intron Pde11 - chr2L 18568419 intron Pde11 - chr2L_9_18565001 chr2L_18565001 RAL-440 373 chr2L 18578722 18578768 chr2L 18578824 18578864 9 99 2.5 4.0 3.2 2.1 142 chr2L 18578722 intron Pde11 - chr2L 18578793 intron Pde11 - chr2L 18578864 intron Pde11 - chr2L_9_18575001 chr2L_18575001 RAL-440 374 chr2L 18703004 18703045 chr2L 18703103 18703144 6 94 5.5 5.0 5.2 1.0 140 chr2L 18703004 5` UTR CG10376 - chr2L 18703074 5` UTR CG10376 - chr2L 18703144 intergenic CG10376 -,CG10343 + chr2L_6_18700001 chr2L_18700001 RAL-440 375 chr2L 18728502 18728538 chr2L 18728603 18728640 5 102 5.0 3.0 4.0 1.0 138 chr2L 18728502 intron CG10348 - chr2L 18728571 intron CG10348 - chr2L 18728640 intron CG10348 - chr2L_5_18725001 chr2L_18725001 RAL-440 376 chr2L 18807595 18807633 chr2L 18807683 18807736 7 98 1.5 3.0 2.2 2.2 141 chr2L 18807595 intergenic not near genes chr2L 18807666 intergenic not near genes chr2L 18807736 intergenic not near genes chr2L_7_18805001 chr2L_18805001 RAL-440 377 chr2L 18816744 18816769 chr2L 18816871 18816900 12 141 4.5 6.0 5.2 1.9 156 chr2L 18816744 intergenic not near genes chr2L 18816822 intergenic not near genes chr2L 18816900 intergenic not near genes chr2L_12_18815001 chr2L_18815001 RAL-440 378 chr2L 18876869 18876884 chr2L 18876946 18876981 8 94 5.0 3.0 4.0 1.6 112 chr2L 18876869 intron tup - chr2L 18876925 intron tup - chr2L 18876981 intron tup - chr2L_8_18875001 chr2L_18875001 RAL-440 379 chr2L 18898395 18898428 chr2L 18898479 18898523 10 90 4.5 1.5 3.0 2.5 128 chr2L 18898395 intergenic not near genes chr2L 18898459 intergenic not near genes chr2L 18898523 intergenic not near genes chr2L_10_18895001 chr2L_18895001 RAL-440 380 chr2L 18902620 18902655 chr2L 18902904 18902942 8 288 1.5 1.5 1.5 3.2 322 chr2L 18902620 intergenic not near genes chr2L 18902781 intergenic not near genes chr2L 18902942 intergenic not near genes chr2L_8_18900001 chr2L_18900001 RAL-440 381 chr2L 19075862 19076078 chr2L 19075984 19076141 13 106 5.0 3.5 4.2 2.5 279 chr2L 19075862 intergenic not near genes chr2L 19076002 intergenic not near genes chr2L 19076141 intergenic not near genes chr2L_13_19075001 chr2L_19075001 RAL-440 382 chr2L 19147350 19147397 chr2L 19154405 19154431 297 12 7040 3.5 7.0 5.2 1.9 7081 chr2L 19147350 intron brat + chr2L 19150890 intron brat + chr2L 19154431 intron brat + chr2L_12_19150001 chr2L_19150001 RAL-440 383 chr2L 19182971 19183004 chr2L 19183051 19183088 13 88 5.5 7.0 6.2 1.8 117 chr2L 19182971 intergenic CR17567 -,CG42688 - chr2L 19183030 intergenic CR17567 -,CG42688 - chr2L 19183088 3` UTR CR17567 - chr2L_13_19180001 chr2L_19180001 RAL-440 384 chr2L 19183347 19183371 chr2L 19183427 19183462 7 87 3.0 6.0 4.5 1.3 115 chr2L 19183347 intron CR17567 - chr2L 19183404 3` UTR CR17567 - chr2L 19183462 intron CR17567 - chr2L_7_19180001 chr2L_19180001 RAL-440 385 chr2L 19251687 19251730 chr2L 19251807 19251812 8 110 5.0 7.0 6.0 1.1 125 chr2L 19251687 intergenic not near genes chr2L 19251750 intergenic not near genes chr2L 19251812 intergenic not near genes chr2L_8_19250001 chr2L_19250001 RAL-440 386 chr2L 19345007 19345035 chr2L 19357226 19357247 blood 10 12222 5.5 7.0 6.2 1.4 12240 chr2L 19345007 intron dnt - chr2L 19351127 intron dnt - chr2L 19357247 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-440 387 chr2L 19357530 19357569 chr2L 19357636 19357665 5 97 4.0 4.0 4.0 1.0 135 chr2L 19357530 intron dnt - chr2L 19357598 intron dnt - chr2L 19357665 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-440 388 chr2L 19359156 19359208 chr2L 19359269 19359319 16 106 7.5 4.5 6.0 2.3 163 chr2L 19359156 intron dnt - chr2L 19359238 intron dnt - chr2L 19359319 intron dnt - chr2L_16_19355001 chr2L_19355001 RAL-440 389 chr2L 19376814 19376852 chr2L 19376897 19376911 6 73 2.5 2.0 2.2 1.9 97 chr2L 19376814 intergenic not near genes chr2L 19376862 intergenic not near genes chr2L 19376911 intergenic not near genes chr2L_6_19375001 chr2L_19375001 RAL-440 390 chr2L 19407718 19407739 chr2L 19407913 19407923 14 204 5.0 6.0 5.5 2.2 205 chr2L 19407718 intron Pax - chr2L 19407820 intron Pax - chr2L 19407923 intron Pax - chr2L_14_19405001 chr2L_19405001 RAL-440 391 chr2L 19541611 19541654 chr2L 19541715 19541759 15 97 4.5 1.5 3.0 3.8 148 chr2L 19541611 intergenic CG13081 + chr2L 19541685 intergenic CG13081 + chr2L 19541759 intergenic CG13081 + chr2L_15_19540001 chr2L_19540001 RAL-440 392 chr2L 19544620 19544630 chr2L 19544667 19544673 4 53 6.0 7.5 6.8 0.5 53 chr2L 19544620 exon ref(2)P + chr2L 19544646 exon ref(2)P + chr2L 19544673 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-440 393 chr2L 19562511 19562562 chr2L 19562612 19562650 7 93 0.0 5.5 2.8 1.8 139 chr2L 19562511 exon Tep5 + chr2L 19562580 intron Tep5 + chr2L 19562650 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-440 394 chr2L 19620088 19620119 chr2L 19621082 19621128 jockey 5 994 7.5 2.5 5.0 0.8 1040 chr2L 19620088 intron Lar + chr2L 19620608 intron Lar + chr2L 19621128 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-440 395 chr2L 19620121 19620130 chr2L 19621079 19621122 jockey 5 982 5.5 2.5 4.0 1.0 1001 chr2L 19620121 intron Lar + chr2L 19620622 intron Lar + chr2L 19621122 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-440 396 chr2L 19652559 19652601 chr2L 19674005 19674055 opus 14 21449 5.5 2.5 4.0 2.8 21496 chr2L 19652559 intron Lar + chr2L 19663307 intron Lar + chr2L 19674055 intron Lar + chr2L_14_19660001 chr2L_19660001 RAL-440 397 chr2L 19689057 19689090 chr2L 19689160 19689213 7 108 1.5 3.0 2.2 2.2 156 chr2L 19689057 intron Lar + chr2L 19689135 intron Lar + chr2L 19689213 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-440 398 chr2L 19697142 19697169 chr2L 19697228 19697258 8 91 5.5 2.5 4.0 1.6 116 chr2L 19697142 intron Lar + chr2L 19697200 intron Lar + chr2L 19697258 intron Lar + chr2L_8_19695001 chr2L_19695001 RAL-440 399 chr2L 19703530 19703570 chr2L 19712673 19712710 roo 15 9143 7.5 1.0 4.2 2.9 9180 chr2L 19703530 intron Lar + chr2L 19708120 intron Lar + chr2L 19712710 intron Lar + chr2L_15_19705001 chr2L_19705001 RAL-440 400 chr2L 19712701 19712721 chr2L 19712773 19712803 8 80 3.0 6.5 4.8 1.4 102 chr2L 19712701 intron Lar + chr2L 19712752 intron Lar + chr2L 19712803 intron Lar + chr2L_8_19710001 chr2L_19710001 RAL-440 401 chr2L 19737366 19737386 chr2L 19740822 19740823 1360 8 3457 2.0 3.5 2.8 2.1 3457 chr2L 19737366 intergenic Nf-YB + chr2L 19739094 intergenic not near genes chr2L 19740823 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-440 402 chr2L 19762799 19762833 chr2L 19763053 19763095 pogo 10 257 1.5 2.5 2.0 3.3 296 chr2L 19762799 5` UTR fbp - chr2L 19762947 intron fbp - chr2L 19763095 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-440 403 chr2L 19773148 19773184 chr2L 19773250 19773272 10 102 5.0 4.0 4.5 1.8 124 chr2L 19773148 intergenic not near genes chr2L 19773210 intergenic not near genes chr2L 19773272 intergenic not near genes chr2L_10_19770001 chr2L_19770001 RAL-440 404 chr2L 19837273 19837276 chr2L 19837364 19837376 4 97 11.5 4.0 7.8 0.5 103 chr2L 19837273 intron sick + chr2L 19837324 intron sick + chr2L 19837376 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-440 405 chr2L 19837281 19837308 chr2L 19837359 19837407 8 90 3.0 2.5 2.8 2.1 126 chr2L 19837281 intron sick + chr2L 19837344 intron sick + chr2L 19837407 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-440 406 chr2L 19911298 19911308 chr2L 19911384 19911415 6 92 4.5 6.5 5.5 0.9 117 chr2L 19911298 intron,3` UTR sick +,CR43097 - chr2L 19911356 intron,3` UTR sick +,CR43097 - chr2L 19911415 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-440 407 chr2L 20005880 20005902 chr2L 20010947 20010998 flea 6 5084 5.5 1.5 3.5 1.3 5118 chr2L 20005880 intron CG43861 - chr2L 20008439 intron CG43861 - chr2L 20010998 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-440 408 chr2L 20269606 20269630 chr2L 20269832 20269860 6 226 3.5 3.0 3.2 1.4 254 chr2L 20269606 intergenic not near genes chr2L 20269733 intergenic not near genes chr2L 20269860 intergenic not near genes chr2L_6_20265001 chr2L_20265001 RAL-440 409 chr2L 20272099 20272141 chr2L 20282824 20282855 copia 12 10720 6.5 5.5 6.0 1.7 10756 chr2L 20272099 intergenic not near genes chr2L 20277477 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_12_20275001 chr2L_20275001 RAL-440 410 chr2L 20296508 20296536 chr2L 20296595 20296627 5 92 0.5 4.0 2.2 1.6 119 chr2L 20296508 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296627 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-440 411 chr2L 20298836 20298852 chr2L 20298918 20298935 5 85 5.0 5.5 5.2 0.8 99 chr2L 20298836 intergenic not near genes chr2L 20298886 intergenic not near genes chr2L 20298935 intergenic not near genes chr2L_5_20295001 chr2L_20295001 RAL-440 412 chr2L 20303163 20303178 chr2L 20310646 20310656 blood 4 7483 0.0 2.0 1.0 2.0 7493 chr2L 20303163 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310656 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-440 413 chr2L 20310878 20310893 chr2L 20310964 20310990 9 89 1.0 5.0 3.0 2.2 112 chr2L 20310878 intergenic spir + chr2L 20310934 intergenic spir + chr2L 20310990 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-440 414 chr2L 20351735 20351774 chr2L 20351841 20351882 7 106 2.0 4.0 3.0 1.8 147 chr2L 20351735 intron RtGEF + chr2L 20351808 intron RtGEF + chr2L 20351882 intron RtGEF + chr2L_7_20350001 chr2L_20350001 RAL-440 415 chr2L 20372210 20372243 chr2L 20372471 20372485 pogo 8 255 1.0 3.0 2.0 2.7 275 chr2L 20372210 intergenic Ugt37a1 - chr2L 20372348 intergenic Ugt37a1 - chr2L 20372485 exon Ugt37a1 - chr2L_8_20370001 chr2L_20370001 RAL-440 416 chr2L 20383434 20383472 chr2L 20383535 20383577 9 97 3.5 4.0 3.8 1.9 143 chr2L 20383434 intergenic not near genes chr2L 20383506 intergenic not near genes chr2L 20383577 intergenic not near genes chr2L_9_20380001 chr2L_20380001 RAL-440 417 chr2L 20498669 20498706 chr2L 20498787 20498823 10 112 4.0 5.5 4.8 1.7 154 chr2L 20498669 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498823 intergenic not near genes chr2L_10_20495001 chr2L_20495001 RAL-440 418 chr2L 20568658 20568687 chr2L 20569054 20569091 X-element 7 403 5.5 2.0 3.8 1.5 433 chr2L 20568658 intron CR45347 + chr2L 20568874 intron CR45347 + chr2L 20569091 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-440 419 chr2L 20570777 20570781 chr2L 20570870 20570875 4 94 11.5 8.5 10.0 0.4 98 chr2L 20570777 intron CR45347 + chr2L 20570826 intron CR45347 + chr2L 20570875 intron CR45347 + chr2L_4_20570001 chr2L_20570001 RAL-440 420 chr2L 20570788 20570800 chr2L 20570863 20570884 4 89 9.5 7.5 8.5 0.4 96 chr2L 20570788 intron CR45347 + chr2L 20570836 intron CR45347 + chr2L 20570884 intron CR45347 + chr2L_4_20570001 chr2L_20570001 RAL-440 421 chr2L 20576215 20576244 chr2L 20583689 20583717 blood 7 7473 5.5 5.5 5.5 1.1 7502 chr2L 20576215 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-440 422 chr2L 20597112 20597117 chr2L 20597175 20597205 4 78 3.0 7.0 5.0 0.7 93 chr2L 20597112 intron CR44909 - chr2L 20597158 intron CR44909 - chr2L 20597205 intron CR44909 - chr2L_4_20595001 chr2L_20595001 RAL-440 423 chr2L 20668685 20668709 chr2L 20668763 20668794 5 82 1.5 3.5 2.5 1.4 109 chr2L 20668685 intron CG31678 - chr2L 20668740 intron CG31678 - chr2L 20668794 intron CG31678 - chr2L_5_20665001 chr2L_20665001 RAL-440 424 chr2L 20674819 20674864 chr2L 20674921 20674957 5 95 3.0 0.0 1.5 2.0 138 chr2L 20674819 intron CG31678 - chr2L 20674888 intron CG31678 - chr2L 20674957 intron CG31678 - chr2L_5_20670001 chr2L_20670001 RAL-440 425 chr2L 20804690 20804733 chr2L 20804795 20804824 6 96 7.5 5.5 6.5 0.8 134 chr2L 20804690 intron CG9328 + chr2L 20804757 intron CG9328 + chr2L 20804824 intron CG9328 + chr2L_6_20800001 chr2L_20800001 RAL-440 426 chr2L 20835814 20835838 chr2L 20836542 20836575 Quasimodo 6 727 0.5 4.5 2.5 1.7 761 chr2L 20835814 5` UTR Oseg5 - chr2L 20836194 intergenic Oseg5 -,Spn38F - chr2L 20836575 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-440 427 chr2L 20891525 20891543 chr2L 20896639 20896664 jockey 4 5114 5.5 5.0 5.2 0.6 5139 chr2L 20891525 intron,intron CG43739 -,sky - chr2L 20894094 intron,intron CG43739 -,sky - chr2L 20896664 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 RAL-440 428 chr2L 20967077 20967105 chr2L 20967168 20967210 8 99 2.0 3.5 2.8 2.1 133 chr2L 20967077 3` UTR CG42238 - chr2L 20967144 3` UTR CG42238 - chr2L 20967210 3` UTR CG42238 - chr2L_8_20965001 chr2L_20965001 RAL-440 429 chr2L 20976625 20976680 chr2L 20981458 20981463 X-element 15 4825 3.0 4.0 3.5 3.3 4838 chr2L 20976625 intron CG42238 - chr2L 20979044 intron CG42238 - chr2L 20981463 intron CG42238 - chr2L_15_20975001 chr2L_20975001 RAL-440 430 chr2L 21020271 21020301 chr2L 21023950 21023986 NOF 10 3682 7.5 2.5 5.0 1.7 3715 chr2L 21020271 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_10_21020001 chr2L_21020001 RAL-440 431 chr2L 21041126 21041165 chr2L 21049400 21049442 Tirant 4 8276 4.0 5.5 4.8 0.7 8316 chr2L 21041126 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049442 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-440 432 chr2L 21119273 21119314 chr2L 21119371 21119412 13 97 4.5 4.0 4.2 2.5 139 chr2L 21119273 intron Nhe2 + chr2L 21119342 intron Nhe2 + chr2L 21119412 intron Nhe2 + chr2L_13_21115001 chr2L_21115001 RAL-440 433 chr2L 21284042 21284082 chr2L 21284527 21284571 11 484 3.0 6.0 4.5 2.0 529 chr2L 21284042 intergenic not near genes chr2L 21284306 intergenic not near genes chr2L 21284571 intergenic not near genes chr2L_11_21280001 chr2L_21280001 RAL-440 434 chr2L 21285634 21285669 chr2L 21285732 21285771 12 106 4.0 5.0 4.5 2.2 137 chr2L 21285634 intergenic Mio - chr2L 21285702 intergenic Mio - chr2L 21285771 intergenic Mio - chr2L_12_21285001 chr2L_21285001 RAL-440 435 chr2L 21286609 21286633 chr2L 21286682 21286724 6 89 5.0 6.5 5.8 0.9 115 chr2L 21286609 exon Mio - chr2L 21286666 intron Mio - chr2L 21286724 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-440 436 chr2L 21307454 21307491 chr2L 21307554 21307584 8 96 4.5 4.5 4.5 1.5 130 chr2L 21307454 intron Mio - chr2L 21307519 intron Mio - chr2L 21307584 intron Mio - chr2L_8_21305001 chr2L_21305001 RAL-440 437 chr2L 21347544 21347574 chr2L 21355025 21355066 blood 7 7487 2.5 1.0 1.8 2.5 7522 chr2L 21347544 intron Tsp39D + chr2L 21351305 intron Tsp39D + chr2L 21355066 intron Tsp39D + chr2L_7_21350001 chr2L_21350001 RAL-440 438 chr2L 21396593 21396620 chr2L 21396833 21396870 5 237 3.5 5.0 4.2 1.0 277 chr2L 21396593 intergenic not near genes chr2L 21396732 intergenic not near genes chr2L 21396870 intergenic not near genes chr2L_5_21395001 chr2L_21395001 RAL-440 439 chr2L 21597027 21597058 chr2L 21604781 21604805 roo 7 7754 4.5 4.0 4.2 1.3 7778 chr2L 21597027 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604805 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-440 440 chr2L 21605040 21605064 chr2L 21606722 21606730 4 1675 1.5 6.0 3.8 0.8 1690 chr2L 21605040 intergenic not near genes chr2L 21605885 intergenic not near genes chr2L 21606730 intergenic not near genes chr2L_4_21605001 chr2L_21605001 RAL-440 441 chr2L 21691816 21691852 chr2L 21698304 21698323 Burdock 6 6478 4.5 1.0 2.8 1.6 6507 chr2L 21691816 intron CG31619 + chr2L 21695070 intron CG31619 + chr2L 21698323 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-440 442 chr2L 21743746 21743789 chr2L 21743836 21743871 12 90 1.5 2.0 1.8 4.3 125 chr2L 21743746 intron step - chr2L 21743808 intron step - chr2L 21743871 exon step - chr2L_12_21740001 chr2L_21740001 RAL-440 443 chr2L 21744684 21744720 chr2L 21744778 21744811 5 100 5.5 6.0 5.8 0.7 127 chr2L 21744684 intron step - chr2L 21744748 intron step - chr2L 21744811 intron step - chr2L_5_21740001 chr2L_21740001 RAL-440 444 chr2L 21745254 21745274 chr2L 21745364 21745377 4 103 2.0 2.5 2.2 1.2 123 chr2L 21745254 intron step - chr2L 21745316 intron step - chr2L 21745377 intron step - chr2L_4_21745001 chr2L_21745001 RAL-440 445 chr2L 21766625 21766657 chr2L 21766732 21766762 4 106 5.5 4.5 5.0 0.7 137 chr2L 21766625 intron CG31612 - chr2L 21766694 intron CG31612 - chr2L 21766762 intron CG31612 - chr2L_4_21765001 chr2L_21765001 RAL-440 446 chr2L 21819327 21819360 chr2L 21819419 21819456 4 96 2.0 4.5 3.2 1.0 129 chr2L 21819327 intergenic CR44786 + chr2L 21819392 intergenic CR44786 + chr2L 21819456 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-440 447 chr2L 21898910 21898918 chr2L 21899027 21899032 4 116 3.0 3.5 3.2 1.0 122 chr2L 21898910 intergenic not near genes chr2L 21898971 intergenic not near genes chr2L 21899032 intergenic not near genes chr2L_4_21895001 chr2L_21895001 RAL-440 448 chr2L 21963780 21963806 chr2L 21963854 21963904 8 87 2.5 3.5 3.0 2.0 124 chr2L 21963780 intergenic not near genes chr2L 21963842 intergenic not near genes chr2L 21963904 intergenic not near genes chr2L_8_21960001 chr2L_21960001 RAL-440 449 chr2L 21981689 21981704 chr2L 21990863 21990875 roo 4 9172 4.0 12.0 8.0 0.4 9186 chr2L 21981689 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990875 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-440 450 chr2L 22011915 22011946 chr2L 22011998 22012027 6 87 2.0 1.0 1.5 2.4 112 chr2L 22011915 intergenic not near genes chr2L 22011971 intergenic not near genes chr2L 22012027 intergenic not near genes chr2L_6_22010001 chr2L_22010001 RAL-440 451 chr2L 22047255 22047256 chr2L 22047378 22047401 4 134 3.0 2.5 2.8 1.1 146 chr2L 22047255 intergenic not near genes chr2L 22047328 intergenic not near genes chr2L 22047401 intergenic not near genes chr2L_4_22045001 chr2L_22045001 RAL-440 452 chr2L 22192003 22192058 chr2L 22192112 22192146 19 102 3.5 9.5 6.5 2.5 143 chr2L 22192003 intron Ir40a - chr2L 22192074 intron Ir40a - chr2L 22192146 intron Ir40a - chr2L_19_22190001 chr2L_22190001 RAL-440 453 chr2L 22192199 22192248 chr2L 22192612 22192646 6 399 5.5 4.0 4.8 1.0 447 chr2L 22192199 intron Ir40a - chr2L 22192422 intron Ir40a - chr2L 22192646 intron Ir40a - chr2L_6_22190001 chr2L_22190001 RAL-440 454 chr2L 22294358 22294387 chr2L 22294455 22294485 7 101 1.5 3.5 2.5 2.0 127 chr2L 22294358 intergenic not near genes chr2L 22294422 intergenic not near genes chr2L 22294485 intergenic not near genes chr2L_7_22290001 chr2L_22290001 RAL-440 455 chr2L 22545983 22546009 chr2L 22546080 22546094 12 93 5.5 3.0 4.2 2.3 111 chr2L 22545983 intron CG17490 + chr2L 22546038 intron CG17490 + chr2L 22546094 intron CG17490 + chr2L_12_22545001 chr2L_22545001 RAL-440 456 chr2L 22548921 22548945 chr2L 22550151 22550175 1360 8 1234 0.5 12.0 6.2 1.1 1254 chr2L 22548921 intergenic CG17490 + chr2L 22549548 intergenic not near genes chr2L 22550175 intergenic CG17493 + chr2L_8_22545001 chr2L_22545001 RAL-440 457 chr2L 22581953 22582001 chr2L 22583762 22583809 S-element 5 1800 2.5 5.0 3.8 1.0 1856 chr2L 22581953 intron CG17494 + chr2L 22582881 intron CG17494 + chr2L 22583809 intron CG17494 + chr2L_5_22580001 chr2L_22580001 RAL-440 458 chr2L 22674052 22674093 chr2L 22674148 22674176 8 90 2.0 3.0 2.5 2.3 124 chr2L 22674052 intron CG40006 - chr2L 22674114 intron CG40006 - chr2L 22674176 intron CG40006 - chr2L_8_22670001 chr2L_22670001 RAL-440 459 chr2L 22676110 22676155 chr2L 22676367 22676413 7 255 2.0 2.0 2.0 2.3 303 chr2L 22676110 intron CG40006 - chr2L 22676262 intron CG40006 - chr2L 22676413 intron CG40006 - chr2L_7_22675001 chr2L_22675001 RAL-440 460 chr2L 22679811 22679824 chr2L 22684586 22684605 F-element 6 4780 3.5 7.5 5.5 0.9 4794 chr2L 22679811 intron CG40006 - chr2L 22682208 intron CG40006 - chr2L 22684605 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-440 461 chr2L 22693927 22693950 chr2L 22694004 22694047 8 96 1.0 2.0 1.5 3.2 120 chr2L 22693927 intron CG40006 - chr2L 22693987 intron CG40006 - chr2L 22694047 intron CG40006 - chr2L_8_22690001 chr2L_22690001 RAL-440 462 chr2L 22727618 22727636 chr2L 22727721 22727783 8 141 3.0 0.0 1.5 3.2 165 chr2L 22727618 intron CG40006 - chr2L 22727700 intron CG40006 - chr2L 22727783 intron CG40006 - chr2L_8_22725001 chr2L_22725001 RAL-440 463 chr2L 22737939 22737947 chr2L 22738066 22738071 5 130 7.0 4.0 5.5 0.8 132 chr2L 22737939 intron CG40006 - chr2L 22738005 intron CG40006 - chr2L 22738071 intron CG40006 - chr2L_5_22735001 chr2L_22735001 RAL-440 464 chr2L 22776410 22776441 chr2L 22778212 22778247 S-element 9 1803 3.5 2.5 3.0 2.2 1837 chr2L 22776410 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778247 intergenic not near genes chr2L_9_22775001 chr2L_22775001 RAL-440 465 chr2L 22983940 22983961 chr2L 22984025 22984025 4 79 3.5 3.5 3.5 0.9 85 chr2L 22983940 intron cta + chr2L 22983982 intron cta + chr2L 22984025 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-440 466 chr2R 490754 490764 chr2R 490844 490859 6 95 6.5 1.5 4.0 1.2 105 chr2R 490754 intergenic not near genes chr2R 490806 intergenic not near genes chr2R 490859 intergenic not near genes chr2R_6_490001 chr2R_490001 RAL-440 467 chr2R 952433 952456 chr2R 952561 952583 4 134 1.5 1.0 1.2 1.8 150 chr2R 952433 intergenic not near genes chr2R 952508 intergenic not near genes chr2R 952583 intergenic not near genes chr2R_4_950001 chr2R_950001 RAL-440 468 chr2R 1365868 1365892 chr2R 1365985 1366024 8 124 4.0 10.5 7.2 1.0 156 chr2R 1365868 intron l(2)41Ab + chr2R 1365946 intron l(2)41Ab + chr2R 1366024 intron l(2)41Ab + chr2R_8_1365001 chr2R_1365001 RAL-440 469 chr2R 1516594 1516603 chr2R 1521333 1521336 1731 8 4741 13.0 8.0 10.5 0.7 4742 chr2R 1516594 exon Maf1 - chr2R 1518965 intron Maf1 - chr2R 1521336 5` UTR Maf1 - chr2R_8_1515001 chr2R_1515001 RAL-440 470 chr2R 2015123 2015165 chr2R 2015213 2015262 6 91 3.0 3.0 3.0 1.5 139 chr2R 2015123 intron CG17684 - chr2R 2015192 intron CG17684 - chr2R 2015262 intron CG17684 - chr2R_6_2015001 chr2R_2015001 RAL-440 471 chr2R 2498979 2499016 chr2R 2508132 2508183 roo 9 9161 6.5 4.5 5.5 1.4 9204 chr2R 2498979 intron MFS17 - chr2R 2503581 intron MFS17 - chr2R 2508183 intron MFS17 - chr2R_9_2500001 chr2R_2500001 RAL-440 472 chr2R 2508299 2508332 chr2R 2508457 2508490 6 156 2.0 4.0 3.0 1.5 191 chr2R 2508299 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508490 intron MFS17 - chr2R_6_2505001 chr2R_2505001 RAL-440 473 chr2R 3291800 3292099 chr2R 3914992 3915278 8 623181 9.5 21.5 15.5 0.5 623478 chr2R 3291800 intergenic not near genes chr2R 3603539 intergenic not near genes chr2R 3915278 intron uex - chr2R_8_3600001 chr2R_3600001 RAL-440 474 chr2R 3293756 3293761 chr2R 3293828 3293835 4 78 2.5 1.5 2.0 1.3 79 chr2R 3293756 intergenic not near genes chr2R 3293796 intergenic not near genes chr2R 3293835 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-440 475 chr2R 4312938 4312984 chr2R 4313036 4313088 17 96 7.5 2.0 4.8 2.9 150 chr2R 4312938 intergenic not near genes chr2R 4313013 intergenic not near genes chr2R 4313088 intergenic not near genes chr2R_17_4310001 chr2R_4310001 RAL-440 476 chr2R 4624358 4624384 chr2R 4624477 4624505 7 120 5.0 4.0 4.5 1.3 147 chr2R 4624358 intergenic not near genes chr2R 4624432 intergenic not near genes chr2R 4624505 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-440 477 chr2R 4634164 4634186 chr2R 4634233 4634267 13 82 3.5 4.5 4.0 2.6 103 chr2R 4634164 intergenic not near genes chr2R 4634216 intergenic not near genes chr2R 4634267 intergenic not near genes chr2R_13_4630001 chr2R_4630001 RAL-440 478 chr2R 4702480 4702506 chr2R 4702616 4702663 10 150 2.5 6.0 4.2 1.9 183 chr2R 4702480 intron Nipped-B - chr2R 4702572 intron Nipped-B - chr2R 4702663 intron Nipped-B - chr2R_10_4700001 chr2R_4700001 RAL-440 479 chr2R 4750327 4750377 chr2R 4751497 4751516 1360 13 1162 2.0 1.5 1.8 4.6 1189 chr2R 4750327 intron conu + chr2R 4750922 intron conu + chr2R 4751516 intron conu + chr2R_13_4750001 chr2R_4750001 RAL-440 480 chr2R 5009139 5009171 chr2R 5009381 5009404 5 240 2.5 3.0 2.8 1.3 265 chr2R 5009139 intron Ir41a + chr2R 5009272 intron Ir41a + chr2R 5009404 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-440 481 chr2R 5019276 5019311 chr2R 5019364 5019414 15 99 3.5 5.5 4.5 2.7 138 chr2R 5019276 intron Ir41a + chr2R 5019345 intron Ir41a + chr2R 5019414 intron Ir41a + chr2R_15_5015001 chr2R_5015001 RAL-440 482 chr2R 5075931 5075962 chr2R 5076092 5076123 7 153 23.5 28.5 26.0 0.3 192 chr2R 5075931 intergenic not near genes chr2R 5076027 intergenic not near genes chr2R 5076123 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-440 483 chr2R 5080774 5080819 chr2R 5080879 5080906 10 96 1.5 4.0 2.8 2.6 132 chr2R 5080774 intergenic not near genes chr2R 5080840 intergenic not near genes chr2R 5080906 intergenic not near genes chr2R_10_5080001 chr2R_5080001 RAL-440 484 chr2R 5087176 5087189 chr2R 5087279 5087295 4 110 9.5 4.0 6.8 0.5 119 chr2R 5087176 intergenic not near genes chr2R 5087236 intergenic not near genes chr2R 5087295 intergenic not near genes chr2R_4_5085001 chr2R_5085001 RAL-440 485 chr2R 5087191 5087213 chr2R 5087277 5087284 4 88 2.0 4.0 3.0 1.0 93 chr2R 5087191 intergenic not near genes chr2R 5087238 intergenic not near genes chr2R 5087284 intergenic not near genes chr2R_4_5085001 chr2R_5085001 RAL-440 486 chr2R 5237336 5237371 chr2R 5237430 5237465 15 94 3.5 0.0 1.8 5.4 129 chr2R 5237336 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237465 intron Nipped-A - chr2R_15_5235001 chr2R_5235001 RAL-440 487 chr2R 5303480 5303522 chr2R 5303586 5303611 9 102 2.5 5.0 3.8 1.9 131 chr2R 5303480 intergenic not near genes chr2R 5303546 intergenic not near genes chr2R 5303611 intergenic not near genes chr2R_9_5300001 chr2R_5300001 RAL-440 488 chr2R 5363486 5363503 chr2R 5363569 5363575 5 84 7.5 2.0 4.8 0.9 89 chr2R 5363486 5` UTR CR42646 + chr2R 5363530 intron CR42646 + chr2R 5363575 intron CR42646 + chr2R_5_5360001 chr2R_5360001 RAL-440 489 chr2R 5396254 5396287 chr2R 5396501 5396541 8 250 21.5 20.0 20.8 0.4 287 chr2R 5396254 intergenic not near genes chr2R 5396398 intergenic not near genes chr2R 5396541 intergenic not near genes chr2R_8_5395001 chr2R_5395001 RAL-440 490 chr2R 5472376 5472387 chr2R 5472470 5472478 4 95 6.5 7.5 7.0 0.5 102 chr2R 5472376 intron CG30440 - chr2R 5472427 intron CG30440 - chr2R 5472478 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-440 491 chr2R 5473358 5473391 chr2R 5473462 5473501 9 101 2.5 3.0 2.8 2.4 143 chr2R 5473358 intron CG30440 - chr2R 5473430 intron CG30440 - chr2R 5473501 intron CG30440 - chr2R_9_5470001 chr2R_5470001 RAL-440 492 chr2R 5543197 5543222 chr2R 5547294 5547326 invader1 5 4098 0.0 4.0 2.0 1.7 4129 chr2R 5543197 intron CG30438 + chr2R 5545262 intron CG30438 + chr2R 5547326 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-440 493 chr2R 5581410 5581424 chr2R 5627606 5627653 4 46218 0.5 6.5 3.5 0.9 46243 chr2R 5581410 intergenic not near genes chr2R 5604532 intron Fis1 - chr2R 5627653 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-440 494 chr2R 5640028 5640044 chr2R 5640094 5640138 6 80 4.5 8.0 6.2 0.8 110 chr2R 5640028 intergenic not near genes chr2R 5640083 intergenic not near genes chr2R 5640138 intergenic not near genes chr2R_6_5640001 chr2R_5640001 RAL-440 495 chr2R 5774279 5774304 chr2R 5774538 5774575 8 260 4.5 4.0 4.2 1.5 296 chr2R 5774279 3` UTR Gp210 + chr2R 5774427 intergenic Gp210 +,ZnT41F - chr2R 5774575 intergenic ZnT41F -,Gp210 + chr2R_8_5770001 chr2R_5770001 RAL-440 496 chr2R 5794230 5794264 chr2R 5794359 5794412 16 141 8.0 5.5 6.8 2.1 182 chr2R 5794230 intergenic not near genes chr2R 5794321 intergenic not near genes chr2R 5794412 intergenic not near genes chr2R_16_5790001 chr2R_5790001 RAL-440 497 chr2R 5869255 5869308 chr2R 5874351 5874387 flea 21 5087 2.0 5.5 3.8 4.4 5132 chr2R 5869255 intergenic not near genes chr2R 5871821 intergenic not near genes chr2R 5874387 intergenic not near genes chr2R_21_5870001 chr2R_5870001 RAL-440 498 chr2R 5878943 5878957 chr2R 5879009 5879049 7 78 3.0 4.0 3.5 1.6 106 chr2R 5878943 intergenic CG44438 - chr2R 5878996 intergenic CG44438 - chr2R 5879049 intergenic CG44438 - chr2R_7_5875001 chr2R_5875001 RAL-440 499 chr2R 5885345 5885366 chr2R 5885494 5885510 4 145 5.5 3.5 4.5 0.7 165 chr2R 5885345 5` UTR CR44125 + chr2R 5885428 5` UTR CR44125 + chr2R 5885510 5` UTR CR44125 + chr2R_4_5885001 chr2R_5885001 RAL-440 500 chr2R 5947051 5947073 chr2R 5947192 5947205 4 132 4.0 2.5 3.2 1.0 154 chr2R 5947051 intergenic not near genes chr2R 5947128 intergenic not near genes chr2R 5947205 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-440 501 chr2R 6016782 6016819 chr2R 6016886 6016901 5 98 2.0 5.5 3.8 1.0 119 chr2R 6016782 intergenic not near genes chr2R 6016842 intergenic not near genes chr2R 6016901 intergenic not near genes chr2R_5_6015001 chr2R_6015001 RAL-440 502 chr2R 6065756 6065782 chr2R 6065864 6065906 5 115 4.5 1.5 3.0 1.2 150 chr2R 6065756 intron CCHa2-R + chr2R 6065831 intron CCHa2-R + chr2R 6065906 exon CCHa2-R + chr2R_5_6065001 chr2R_6065001 RAL-440 503 chr2R 6129315 6129358 chr2R 6129402 6129441 13 89 3.0 2.5 2.8 3.4 126 chr2R 6129315 intron EcR - chr2R 6129378 intron EcR - chr2R 6129441 intron EcR - chr2R_13_6125001 chr2R_6125001 RAL-440 504 chr2R 6168192 6168222 chr2R 6168280 6168323 6 95 2.0 4.0 3.0 1.5 131 chr2R 6168192 intron EcR - chr2R 6168258 intron EcR - chr2R 6168323 intron EcR - chr2R_6_6165001 chr2R_6165001 RAL-440 505 chr2R 6178108 6178141 chr2R 6178249 6178281 7 140 4.0 3.5 3.8 1.5 173 chr2R 6178108 intergenic not near genes chr2R 6178194 intergenic not near genes chr2R 6178281 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-440 506 chr2R 6494529 6494555 chr2R 6499293 6499329 F-element 7 4769 2.0 1.5 1.8 2.5 4800 chr2R 6494529 intergenic not near genes chr2R 6496929 intergenic not near genes chr2R 6499329 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-440 507 chr2R 6546697 6546753 chr2R 6546818 6546860 19 113 3.5 2.0 2.8 5.0 163 chr2R 6546697 intron jing + chr2R 6546778 intron jing + chr2R 6546860 intron jing + chr2R_19_6545001 chr2R_6545001 RAL-440 508 chr2R 6597855 6597892 chr2R 6597963 6597983 6 99 6.5 5.5 6.0 0.9 128 chr2R 6597855 intron jing + chr2R 6597919 intron jing + chr2R 6597983 intron jing + chr2R_6_6595001 chr2R_6595001 RAL-440 509 chr2R 6607908 6607948 chr2R 6608030 6608068 11 114 6.0 4.5 5.2 1.8 160 chr2R 6607908 intron jing + chr2R 6607988 intron jing + chr2R 6608068 intron jing + chr2R_11_6605001 chr2R_6605001 RAL-440 510 chr2R 6692461 6692498 chr2R 6692838 6692873 9 384 1.0 4.5 2.8 2.4 412 chr2R 6692461 exon CG9422 + chr2R 6692667 3` UTR CG9422 + chr2R 6692873 3` UTR CG9422 + chr2R_9_6690001 chr2R_6690001 RAL-440 511 chr2R 6948077 6948094 chr2R 6948163 6948165 5 87 3.0 4.0 3.5 1.1 88 chr2R 6948077 intron,intron mim -,CheB42c - chr2R 6948121 intron,intron mim -,CheB42c - chr2R 6948165 intron,intron mim -,CheB42c - chr2R_5_6945001 chr2R_6945001 RAL-440 512 chr2R 6952151 6952179 chr2R 6959745 6959776 opus 5 7597 3.5 2.0 2.8 1.3 7625 chr2R 6952151 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955964 intron,intron mim -,CheB42c - chr2R 6959776 intron,intron mim -,CheB42c - chr2R_5_6955001 chr2R_6955001 RAL-440 513 chr2R 6964136 6964146 chr2R 6964244 6964254 4 106 9.5 1.0 5.2 0.6 118 chr2R 6964136 intron,intron mim -,CheB42c - chr2R 6964195 intron,intron mim -,CheB42c - chr2R 6964254 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-440 514 chr2R 6964148 6964310 chr2R 6964240 6964394 14 97 0.5 1.0 0.8 7.8 246 chr2R 6964148 intron,intron mim -,CheB42c - chr2R 6964271 intron,intron mim -,CheB42c - chr2R 6964394 intron,intron mim -,CheB42c - chr2R_14_6960001 chr2R_6960001 RAL-440 515 chr2R 7052039 7052067 chr2R 7052113 7052143 8 88 3.5 5.0 4.2 1.5 104 chr2R 7052039 intergenic lbm + chr2R 7052091 intergenic lbm + chr2R 7052143 intergenic lbm + chr2R_8_7050001 chr2R_7050001 RAL-440 516 chr2R 7153159 7153191 chr2R 7153245 7153293 4 90 3.0 2.0 2.5 1.1 134 chr2R 7153159 intron,intron pk +,Spn43Ab - chr2R 7153226 intron,intron pk +,Spn43Ab - chr2R 7153293 intron,intron pk +,Spn43Ab - chr2R_4_7150001 chr2R_7150001 RAL-440 517 chr2R 7196556 7196592 chr2R 7201341 7201379 F-element 6 4784 2.5 2.0 2.2 1.9 4823 chr2R 7196556 intron pk + chr2R 7198968 intron pk + chr2R 7201379 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-440 518 chr2R 7434885 7434911 chr2R 7439204 7439223 Juan 4 4311 3.0 5.5 4.2 0.8 4338 chr2R 7434885 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439223 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-440 519 chr2R 7529059 7529084 chr2R 7529144 7529178 11 95 5.0 5.5 5.2 1.8 119 chr2R 7529059 intron Drat - chr2R 7529118 intron Drat - chr2R 7529178 intron Drat - chr2R_11_7525001 chr2R_7525001 RAL-440 520 chr2R 7608399 7608437 chr2R 7613611 7613633 I-element 11 5210 3.5 6.0 4.8 1.9 5234 chr2R 7608399 intron CG1358 - chr2R 7611016 intron CG1358 - chr2R 7613633 intron CG1358 - chr2R_11_7610001 chr2R_7610001 RAL-440 521 chr2R 7642856 7642884 chr2R 7642948 7642964 13 90 7.0 2.5 4.8 2.2 108 chr2R 7642856 intron CG43340 + chr2R 7642910 intron CG43340 + chr2R 7642964 intron CG43340 + chr2R_13_7640001 chr2R_7640001 RAL-440 522 chr2R 7815664 7815700 chr2R 7822139 7822185 Burdock 7 6481 4.0 2.5 3.2 1.7 6521 chr2R 7815664 intergenic CG1882 + chr2R 7818924 intergenic not near genes chr2R 7822185 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-440 523 chr2R 7869179 7869209 chr2R 7873975 7873997 Doc 11 4793 5.0 2.5 3.8 2.3 4818 chr2R 7869179 intron Dgk - chr2R 7871588 intron Dgk - chr2R 7873997 intron Dgk - chr2R_11_7870001 chr2R_7870001 RAL-440 524 chr2R 7897136 7897156 chr2R 7897230 7897240 6 100 0.0 8.5 4.2 1.2 104 chr2R 7897136 intron CG30377 + chr2R 7897188 intron CG30377 + chr2R 7897240 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-440 525 chr2R 8014421 8014455 chr2R 8014526 8014543 4 98 1.5 3.0 2.2 1.2 122 chr2R 8014421 intergenic not near genes chr2R 8014482 intergenic not near genes chr2R 8014543 intergenic not near genes chr2R_4_8010001 chr2R_8010001 RAL-440 526 chr2R 8015665 8015683 chr2R 8017673 8017700 7 2023 3.5 5.0 4.2 1.3 2035 chr2R 8015665 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017700 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-440 527 chr2R 8026802 8026833 chr2R 8026898 8026923 6 90 1.5 3.5 2.5 1.7 121 chr2R 8026802 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026923 intergenic CR45267 + chr2R_6_8025001 chr2R_8025001 RAL-440 528 chr2R 8067051 8067093 chr2R 8067149 8067196 20 97 2.5 6.5 4.5 3.6 145 chr2R 8067051 intron CG17977 - chr2R 8067124 intron CG17977 - chr2R 8067196 exon CG17977 - chr2R_20_8065001 chr2R_8065001 RAL-440 529 chr2R 8089242 8089287 chr2R 8089345 8089393 13 100 3.0 2.5 2.8 3.4 151 chr2R 8089242 3` UTR sut2 + chr2R 8089318 intergenic sut2 +,sut3 + chr2R 8089393 intergenic sut3 +,sut2 + chr2R_13_8085001 chr2R_8085001 RAL-440 530 chr2R 8105932 8105958 chr2R 8106029 8106061 13 97 3.5 4.5 4.0 2.6 129 chr2R 8105932 5` UTR Cul4 - chr2R 8105996 intron Cul4 - chr2R 8106061 5` UTR Cul4 - chr2R_13_8105001 chr2R_8105001 RAL-440 531 chr2R 8155581 8155612 chr2R 8155675 8155719 8 98 3.0 3.0 3.0 2.0 138 chr2R 8155581 intron,intron Lpin -,kermit - chr2R 8155650 intron,intron Lpin -,kermit - chr2R 8155719 intron,intron Lpin -,kermit - chr2R_8_8155001 chr2R_8155001 RAL-440 532 chr2R 8159143 8159156 chr2R 8159659 8159672 4 516 4.0 3.5 3.8 0.8 529 chr2R 8159143 intergenic CG8708 - chr2R 8159408 3` UTR CG8708 - chr2R 8159672 exon CG8708 - chr2R_4_8155001 chr2R_8155001 RAL-440 533 chr2R 8159161 8159184 chr2R 8159656 8159667 4 499 2.0 3.0 2.5 1.1 506 chr2R 8159161 intergenic CG8708 - chr2R 8159414 3` UTR CG8708 - chr2R 8159667 exon CG8708 - chr2R_4_8155001 chr2R_8155001 RAL-440 534 chr2R 8160928 8160936 chr2R 8161027 8161046 1360 4 102 5.0 8.0 6.5 0.5 118 chr2R 8160928 exon CG8708 - chr2R 8160987 intron CG8708 - chr2R 8161046 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-440 535 chr2R 8160938 8160948 chr2R 8161026 8161055 1360 5 97 4.0 7.5 5.8 0.7 117 chr2R 8160938 intron CG8708 - chr2R 8160996 intron CG8708 - chr2R 8161055 intron CG8708 - chr2R_5_8160001 chr2R_8160001 RAL-440 536 chr2R 8187324 8187353 chr2R 8187417 8187460 4 100 3.0 1.0 2.0 1.3 136 chr2R 8187324 intron LRP1 + chr2R 8187392 intron LRP1 + chr2R 8187460 intron LRP1 + chr2R_4_8185001 chr2R_8185001 RAL-440 537 chr2R 8209038 8209078 chr2R 8209140 8209155 10 90 4.0 0.5 2.2 3.1 117 chr2R 8209038 intron LRP1 + chr2R 8209096 intron LRP1 + chr2R 8209155 intron LRP1 + chr2R_10_8205001 chr2R_8205001 RAL-440 538 chr2R 8241819 8241860 chr2R 8241918 8241948 9 90 2.0 9.0 5.5 1.4 129 chr2R 8241819 3` UTR CR44276 - chr2R 8241884 3` UTR CR44276 - chr2R 8241948 3` UTR CR44276 - chr2R_9_8240001 chr2R_8240001 RAL-440 539 chr2R 8249544 8249596 chr2R 8249646 8249678 9 97 4.0 2.0 3.0 2.2 134 chr2R 8249544 5` UTR CG44439 - chr2R 8249611 intergenic CG44439 - chr2R 8249678 intergenic CG44439 - chr2R_9_8245001 chr2R_8245001 RAL-440 540 chr2R 8330858 8330871 chr2R 8331364 8331377 roo 5 505 4.5 4.5 4.5 0.9 519 chr2R 8330858 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-440 541 chr2R 8330873 8330887 chr2R 8331363 8331373 roo 6 494 2.0 4.5 3.2 1.4 500 chr2R 8330873 intron pdm3 + chr2R 8331123 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-440 542 chr2R 8398211 8398236 chr2R 8402993 8402998 Doc 8 4783 4.0 3.0 3.5 1.8 4787 chr2R 8398211 intron CG2121 - chr2R 8400604 intron CG2121 - chr2R 8402998 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-440 543 chr2R 8416305 8416321 chr2R 8417143 8417152 I-element 6 834 4.0 2.0 3.0 1.5 847 chr2R 8416305 intergenic not near genes chr2R 8416728 intergenic CG43296 - chr2R 8417152 intergenic CG43296 - chr2R_6_8415001 chr2R_8415001 RAL-440 544 chr2R 8452013 8452065 chr2R 8452116 8452154 18 95 1.5 4.5 3.0 4.5 141 chr2R 8452013 intergenic Mal-A1 - chr2R 8452084 intergenic Mal-A1 - chr2R 8452154 intergenic Mal-A1 - chr2R_18_8450001 chr2R_8450001 RAL-440 545 chr2R 8483949 8483987 chr2R 8484039 8484063 8 89 3.5 4.5 4.0 1.6 114 chr2R 8483949 intron mtt - chr2R 8484006 intron mtt - chr2R 8484063 intron mtt - chr2R_8_8480001 chr2R_8480001 RAL-440 546 chr2R 8566018 8566058 chr2R 8566989 8567028 1360 15 967 3.0 12.0 7.5 1.8 1010 chr2R 8566018 5` UTR Cyp6a14 - chr2R 8566523 5` UTR Cyp6a14 - chr2R 8567028 5` UTR Cyp6a14 - chr2R_15_8565001 chr2R_8565001 RAL-440 547 chr2R 8568745 8568773 chr2R 8568839 8568875 8 100 2.5 4.0 3.2 1.9 130 chr2R 8568745 intergenic not near genes chr2R 8568810 intergenic not near genes chr2R 8568875 intergenic not near genes chr2R_8_8565001 chr2R_8565001 RAL-440 548 chr2R 8595954 8595963 chr2R 8596047 8596061 6 95 7.5 4.0 5.8 0.9 107 chr2R 8595954 intergenic not near genes chr2R 8596008 intergenic not near genes chr2R 8596061 intergenic not near genes chr2R_6_8595001 chr2R_8595001 RAL-440 549 chr2R 8595965 8595992 chr2R 8596042 8596080 7 88 4.0 4.5 4.2 1.3 115 chr2R 8595965 intergenic not near genes chr2R 8596022 intergenic not near genes chr2R 8596080 intergenic not near genes chr2R_7_8595001 chr2R_8595001 RAL-440 550 chr2R 8612288 8612585 chr2R 8612481 8612671 12 124 5.5 1.0 3.2 2.9 383 chr2R 8612288 3` UTR,intron rgr +,CG8642 - chr2R 8612480 intron CG8642 - chr2R 8612671 intron CG8642 - chr2R_12_8610001 chr2R_8610001 RAL-440 551 chr2R 8635919 8635930 chr2R 8636006 8636028 6 89 0.0 6.0 3.0 1.5 109 chr2R 8635919 intergenic not near genes chr2R 8635974 intergenic not near genes chr2R 8636028 intergenic not near genes chr2R_6_8635001 chr2R_8635001 RAL-440 552 chr2R 8671797 8671805 chr2R 8671878 8671902 5 88 7.5 9.0 8.2 0.5 105 chr2R 8671797 intron Acsl + chr2R 8671850 intron Acsl + chr2R 8671902 intron Acsl + chr2R_5_8670001 chr2R_8670001 RAL-440 553 chr2R 8671811 8671823 chr2R 8671860 8671864 11 75 8.0 8.0 8.0 1.2 53 chr2R 8671811 intron Acsl + chr2R 8671838 intron Acsl + chr2R 8671864 intron Acsl + chr2R_11_8670001 chr2R_8670001 RAL-440 554 chr2R 8691129 8691150 chr2R 8691594 8691600 5 471 2.0 3.0 2.5 1.4 471 chr2R 8691129 intergenic Jon44E + chr2R 8691364 intergenic Jon44E + chr2R 8691600 exon Jon44E + chr2R_5_8690001 chr2R_8690001 RAL-440 555 chr2R 8714711 8714719 chr2R 8714786 8714812 4 88 0.0 7.5 3.8 0.8 101 chr2R 8714711 3` UTR PGRP-SC1b + chr2R 8714762 3` UTR PGRP-SC1b + chr2R 8714812 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-440 556 chr2R 8722766 8722785 chr2R 8723005 8723043 pogo 10 247 6.0 3.5 4.8 1.7 277 chr2R 8722766 intron CG14767 - chr2R 8722904 intron CG14767 - chr2R 8723043 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-440 557 chr2R 8755205 8755216 chr2R 8755652 8755681 4 467 3.0 7.0 5.0 0.7 476 chr2R 8755205 intron CG8740 + chr2R 8755443 intron CG8740 + chr2R 8755681 intron CG8740 + chr2R_4_8755001 chr2R_8755001 RAL-440 558 chr2R 8849214 8849257 chr2R 8849312 8849355 4 96 4.5 0.5 2.5 1.1 141 chr2R 8849214 intron sns + chr2R 8849284 intron sns + chr2R 8849355 intron sns + chr2R_4_8845001 chr2R_8845001 RAL-440 559 chr2R 9031995 9032007 chr2R 9032080 9032105 6 92 5.5 13.5 9.5 0.6 110 chr2R 9031995 intergenic not near genes chr2R 9032050 intergenic not near genes chr2R 9032105 intergenic not near genes chr2R_6_9030001 chr2R_9030001 RAL-440 560 chr2R 9184997 9185039 chr2R 9185106 9185134 5 101 3.5 2.5 3.0 1.2 137 chr2R 9184997 intron ltd - chr2R 9185066 intron ltd - chr2R 9185134 intron ltd - chr2R_5_9185001 chr2R_9185001 RAL-440 561 chr2R 9212690 9212719 chr2R 9213178 9213207 roo 7 486 4.0 2.0 3.0 1.8 517 chr2R 9212690 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-440 562 chr2R 9230225 9230242 chr2R 9230315 9230323 8 87 4.0 4.5 4.2 1.5 98 chr2R 9230225 intron hig - chr2R 9230274 intron hig - chr2R 9230323 exon hig - chr2R_8_9230001 chr2R_9230001 RAL-440 563 chr2R 9368122 9368150 chr2R 9368201 9368222 5 77 2.5 0.0 1.2 2.3 100 chr2R 9368122 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368222 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-440 564 chr2R 9390873 9390913 chr2R 9390971 9391012 9 98 3.0 2.0 2.5 2.6 139 chr2R 9390873 exon l(2)03659 + chr2R 9390942 intron l(2)03659 + chr2R 9391012 exon l(2)03659 + chr2R_9_9390001 chr2R_9390001 RAL-440 565 chr2R 9408105 9408142 chr2R 9408450 9408492 24 347 3.0 3.5 3.2 5.7 387 chr2R 9408105 intron wun - chr2R 9408298 intron wun - chr2R 9408492 intron wun - chr2R_24_9405001 chr2R_9405001 RAL-440 566 chr2R 9480061 9480106 chr2R 9490609 9490646 roo 4 10543 3.5 3.0 3.2 1.0 10585 chr2R 9480061 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490646 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-440 567 chr2R 9510656 9510697 chr2R 9510782 9510812 8 123 0.0 1.0 0.5 5.3 156 chr2R 9510656 intron brp + chr2R 9510734 intron brp + chr2R 9510812 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-440 568 chr2R 9541614 9541651 chr2R 9541702 9541741 10 90 0.0 2.5 1.2 4.5 127 chr2R 9541614 intergenic brp +,CG1888 - chr2R 9541678 intergenic brp +,CG1888 - chr2R 9541741 intergenic brp +,CG1888 - chr2R_10_9540001 chr2R_9540001 RAL-440 569 chr2R 9561039 9561074 chr2R 9561180 9561228 18 148 2.0 2.5 2.2 5.6 189 chr2R 9561039 3` UTR,exon CR45281 -,Or45b + chr2R 9561134 3` UTR CR45281 - chr2R 9561228 3` UTR CR45281 - chr2R_18_9560001 chr2R_9560001 RAL-440 570 chr2R 9561826 9561840 chr2R 9561928 9561948 4 106 0.0 1.5 0.8 2.2 122 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561887 3` UTR,intron CR45281 -,CG1809 + chr2R 9561948 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-440 571 chr2R 9616622 9616640 chr2R 9616745 9616762 5 123 12.5 2.0 7.2 0.6 140 chr2R 9616622 intron Mmp2 - chr2R 9616692 intron Mmp2 - chr2R 9616762 intron Mmp2 - chr2R_5_9615001 chr2R_9615001 RAL-440 572 chr2R 9653246 9653259 chr2R 9653342 9653361 5 99 3.5 4.0 3.8 1.0 115 chr2R 9653246 intron Mmp2 - chr2R 9653304 intron Mmp2 - chr2R 9653361 intron Mmp2 - chr2R_5_9650001 chr2R_9650001 RAL-440 573 chr2R 9653264 9653283 chr2R 9653340 9653369 7 92 2.0 3.5 2.8 1.8 105 chr2R 9653264 intron Mmp2 - chr2R 9653316 intron Mmp2 - chr2R 9653369 intron Mmp2 - chr2R_7_9650001 chr2R_9650001 RAL-440 574 chr2R 9726606 9726639 chr2R 9734165 9734199 17.6 10 7561 4.0 2.0 3.0 2.5 7593 chr2R 9726606 intron sqa - chr2R 9730402 intron sqa - chr2R 9734199 intron sqa - chr2R_10_9730001 chr2R_9730001 RAL-440 575 chr2R 9793603 9793644 chr2R 9793940 9793981 15 339 2.5 5.0 3.8 3.1 378 chr2R 9793603 intron,intron CG1688 -,CG1698 + chr2R 9793792 intron,intron CG1688 -,CG1698 + chr2R 9793981 intron,intron CG1688 -,CG1698 + chr2R_15_9790001 chr2R_9790001 RAL-440 576 chr2R 9871038 9871068 chr2R 9871532 9871547 roo 8 494 1.0 4.5 2.8 2.1 509 chr2R 9871038 intron cbx - chr2R 9871292 intron cbx - chr2R 9871547 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-440 577 chr2R 9957021 9957046 chr2R 9957114 9957147 6 94 3.5 3.5 3.5 1.3 126 chr2R 9957021 intron Mef2 - chr2R 9957084 intron Mef2 - chr2R 9957147 intron Mef2 - chr2R_6_9955001 chr2R_9955001 RAL-440 578 chr2R 10005549 10005581 chr2R 10005656 10005687 7 106 5.0 1.5 3.2 1.7 138 chr2R 10005549 intron Pka-R2 - chr2R 10005618 intron Pka-R2 - chr2R 10005687 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-440 579 chr2R 10005839 10005876 chr2R 10007017 10007061 1360 11 1172 6.0 3.5 4.8 1.9 1222 chr2R 10005839 intron Pka-R2 - chr2R 10006450 intron Pka-R2 - chr2R 10007061 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-440 580 chr2R 10059254 10059294 chr2R 10059658 10059701 6 396 0.5 3.5 2.0 2.0 447 chr2R 10059254 intron magu + chr2R 10059478 intron magu + chr2R 10059701 intron magu + chr2R_6_10055001 chr2R_10055001 RAL-440 581 chr2R 10086900 10086932 chr2R 10087017 10087028 5 109 3.0 2.5 2.8 1.3 128 chr2R 10086900 intron,exon CG2269 +,sut4 - chr2R 10086964 intron,5` UTR CG2269 +,sut4 - chr2R 10087028 intron,5` UTR CG2269 +,sut4 - chr2R_5_10085001 chr2R_10085001 RAL-440 582 chr2R 10122740 10122750 chr2R 10122961 10122978 5 226 3.0 3.0 3.0 1.2 238 chr2R 10122740 intergenic Ccs - chr2R 10122859 intergenic Ccs - chr2R 10122978 intergenic Ccs - chr2R_5_10120001 chr2R_10120001 RAL-440 583 chr2R 10155837 10155880 chr2R 10155951 10155984 5 111 2.0 3.0 2.5 1.4 147 chr2R 10155837 intron KCNQ - chr2R 10155910 intron KCNQ - chr2R 10155984 intron,3` UTR KCNQ -,mlt - chr2R_5_10155001 chr2R_10155001 RAL-440 584 chr2R 10176859 10176907 chr2R 10186044 10186093 roo 11 9181 4.0 2.5 3.2 2.6 9234 chr2R 10176859 intron KCNQ - chr2R 10181476 intron KCNQ - chr2R 10186093 intron KCNQ - chr2R_11_10180001 chr2R_10180001 RAL-440 585 chr2R 10190451 10190468 chr2R 10190523 10190534 4 77 0.5 3.5 2.0 1.3 83 chr2R 10190451 intron KCNQ - chr2R 10190492 intron KCNQ - chr2R 10190534 intron KCNQ - chr2R_4_10190001 chr2R_10190001 RAL-440 586 chr2R 10201020 10201038 chr2R 10201099 10201123 4 80 5.0 0.0 2.5 1.1 103 chr2R 10201020 intergenic not near genes chr2R 10201072 intergenic not near genes chr2R 10201123 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-440 587 chr2R 10203626 10203642 chr2R 10203731 10203731 4 97 6.0 4.0 5.0 0.7 105 chr2R 10203626 intergenic not near genes chr2R 10203678 intergenic not near genes chr2R 10203731 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-440 588 chr2R 10216168 10216222 chr2R 10216266 10216289 10 82 3.0 4.5 3.8 2.1 121 chr2R 10216168 intron,intron CG12912 -,Hr46 - chr2R 10216228 intron,intron CG12912 -,Hr46 - chr2R 10216289 intron,intron CG12912 -,Hr46 - chr2R_10_10215001 chr2R_10215001 RAL-440 589 chr2R 10225719 10225744 chr2R 10225818 10225842 7 99 3.0 1.0 2.0 2.3 123 chr2R 10225719 intron,intron CG12912 -,Hr46 - chr2R 10225780 intron,intron CG12912 -,Hr46 - chr2R 10225842 intron,intron CG12912 -,Hr46 - chr2R_7_10225001 chr2R_10225001 RAL-440 590 chr2R 10257161 10257191 chr2R 10257248 10257296 4 94 1.0 0.0 0.5 2.7 135 chr2R 10257161 intron CG12911 + chr2R 10257228 intron CG12911 + chr2R 10257296 intron CG12911 + chr2R_4_10255001 chr2R_10255001 RAL-440 591 chr2R 10274806 10274825 chr2R 10274902 10274920 5 91 3.5 0.5 2.0 1.7 114 chr2R 10274806 intron CAP + chr2R 10274863 intron CAP + chr2R 10274920 intron CAP + chr2R_5_10270001 chr2R_10270001 RAL-440 592 chr2R 10277865 10277897 chr2R 10277958 10277989 12 91 4.5 7.0 5.8 1.8 124 chr2R 10277865 intron CAP + chr2R 10277927 intron CAP + chr2R 10277989 intron CAP + chr2R_12_10275001 chr2R_10275001 RAL-440 593 chr2R 10313314 10313348 chr2R 10313408 10313456 6 104 1.0 5.0 3.0 1.5 142 chr2R 10313314 intergenic not near genes chr2R 10313385 intergenic not near genes chr2R 10313456 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-440 594 chr2R 10352669 10352705 chr2R 10352750 10352802 12 83 6.5 7.0 6.8 1.5 133 chr2R 10352669 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352736 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352802 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_12_10350001 chr2R_10350001 RAL-440 595 chr2R 10376229 10376265 chr2R 10376338 10376360 6 95 3.5 6.0 4.8 1.0 131 chr2R 10376229 intron CG42732 - chr2R 10376294 intron CG42732 - chr2R 10376360 intron CG42732 - chr2R_6_10375001 chr2R_10375001 RAL-440 596 chr2R 10409066 10409078 chr2R 10409141 10409158 7 83 1.0 3.5 2.2 2.2 92 chr2R 10409066 intron CG42732 - chr2R 10409112 intron CG42732 - chr2R 10409158 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-440 597 chr2R 10429002 10429052 chr2R 10429095 10429115 11 81 4.5 1.5 3.0 2.8 113 chr2R 10429002 intergenic not near genes chr2R 10429058 intergenic not near genes chr2R 10429115 intergenic not near genes chr2R_11_10425001 chr2R_10425001 RAL-440 598 chr2R 10443419 10443447 chr2R 10443539 10443552 9 116 0.0 0.0 0.0 9.0 133 chr2R 10443419 intron Galphao + chr2R 10443486 intron Galphao + chr2R 10443552 intron Galphao + chr2R_9_10440001 chr2R_10440001 RAL-440 599 chr2R 10477154 10477184 chr2R 10477502 10477534 7 351 2.5 0.5 1.5 2.8 380 chr2R 10477154 intron whd - chr2R 10477344 intron whd - chr2R 10477534 intron whd - chr2R_7_10475001 chr2R_10475001 RAL-440 600 chr2R 10562979 10563005 chr2R 10563077 10563081 4 90 2.0 0.0 1.0 2.0 102 chr2R 10562979 intron psq + chr2R 10563030 intron psq + chr2R 10563081 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-440 601 chr2R 10563554 10563578 chr2R 10563636 10563662 6 80 4.5 4.5 4.5 1.1 108 chr2R 10563554 intron psq + chr2R 10563608 intron psq + chr2R 10563662 intron psq + chr2R_6_10560001 chr2R_10560001 RAL-440 602 chr2R 10563913 10563923 chr2R 10564111 10564119 4 201 0.0 4.0 2.0 1.3 206 chr2R 10563913 intron psq + chr2R 10564016 intron psq + chr2R 10564119 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-440 603 chr2R 10574627 10574643 chr2R 10574719 10574745 6 96 6.5 2.0 4.2 1.2 118 chr2R 10574627 intron psq + chr2R 10574686 intron psq + chr2R 10574745 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-440 604 chr2R 10585579 10585591 chr2R 10594154 10594180 Tirant 6 8584 5.0 3.0 4.0 1.2 8601 chr2R 10585579 intron psq + chr2R 10589880 intron psq + chr2R 10594180 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-440 605 chr2R 10644042 10644079 chr2R 10644140 10644172 8 93 3.0 0.0 1.5 3.2 130 chr2R 10644042 intron Git - chr2R 10644107 intron Git - chr2R 10644172 intron Git - chr2R_8_10640001 chr2R_10640001 RAL-440 606 chr2R 10827350 10827361 chr2R 10827420 10827465 9 94 2.5 6.0 4.2 1.7 115 chr2R 10827350 exon CG12325 + chr2R 10827408 3` UTR CG12325 + chr2R 10827465 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_9_10825001 chr2R_10825001 RAL-440 607 chr2R 10859690 10859718 chr2R 10859773 10859811 6 88 0.5 3.5 2.0 2.0 121 chr2R 10859690 intron CG30015 - chr2R 10859750 intron,5` UTR CG30015 -,CR44302 + chr2R 10859811 intron,5` UTR CG30015 -,CR44302 + chr2R_6_10855001 chr2R_10855001 RAL-440 608 chr2R 10937799 10937826 chr2R 10937947 10937984 7 147 0.0 7.5 3.8 1.5 185 chr2R 10937799 intergenic not near genes chr2R 10937892 intergenic not near genes chr2R 10937984 intergenic Spn47C - chr2R_7_10935001 chr2R_10935001 RAL-440 609 chr2R 10948044 10948062 chr2R 10955577 10955620 17.6 6 7545 1.5 2.5 2.0 2.0 7576 chr2R 10948044 intergenic not near genes chr2R 10951832 intergenic not near genes chr2R 10955620 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-440 610 chr2R 10979650 10979670 chr2R 10980133 10980137 297 4 478 2.0 4.0 3.0 1.0 487 chr2R 10979650 intergenic not near genes chr2R 10979894 intergenic not near genes chr2R 10980137 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-440 611 chr2R 11019896 11019913 chr2R 11024940 11024970 jockey 6 5062 1.5 1.0 1.2 2.7 5074 chr2R 11019896 intron luna - chr2R 11022433 intron luna - chr2R 11024970 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-440 612 chr2R 11032633 11032662 chr2R 11032741 11032767 9 108 6.5 2.0 4.2 1.7 134 chr2R 11032633 intron luna - chr2R 11032700 intron luna - chr2R 11032767 intron luna - chr2R_9_11030001 chr2R_11030001 RAL-440 613 chr2R 11158849 11158890 chr2R 11159036 11159065 4 182 1.5 1.0 1.2 1.8 216 chr2R 11158849 intron CG13229 - chr2R 11158957 intron CG13229 - chr2R 11159065 intron CG13229 - chr2R_4_11155001 chr2R_11155001 RAL-440 614 chr2R 11184673 11184688 chr2R 11184767 11184773 4 87 4.5 7.0 5.8 0.6 100 chr2R 11184673 intron shn + chr2R 11184723 intron shn + chr2R 11184773 intron shn + chr2R_4_11180001 chr2R_11180001 RAL-440 615 chr2R 11207811 11207840 chr2R 11208009 11208018 BS 12 197 9.5 5.5 7.5 1.4 207 chr2R 11207811 intron shn + chr2R 11207914 intron shn + chr2R 11208018 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-440 616 chr2R 11207842 11207848 chr2R 11208006 11208047 BS 4 196 5.0 4.5 4.8 0.7 205 chr2R 11207842 intron shn + chr2R 11207944 intron shn + chr2R 11208047 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-440 617 chr2R 11206453 11206492 chr2R 11209290 11209300 BS 5 2824 12.0 12.5 12.2 0.4 2847 chr2R 11206453 intron shn + chr2R 11207876 intron shn + chr2R 11209300 exon shn + chr2R_5_11205001 chr2R_11205001 RAL-440 618 chr2R 11253229 11253257 chr2R 11253305 11253347 7 83 3.5 5.0 4.2 1.3 118 chr2R 11253229 intron Cpr47Ea - chr2R 11253288 intron Cpr47Ea - chr2R 11253347 intron Cpr47Ea - chr2R_7_11250001 chr2R_11250001 RAL-440 619 chr2R 11262196 11262220 chr2R 11262283 11262288 6 89 5.0 1.5 3.2 1.4 92 chr2R 11262196 intergenic Cpr47Ed - chr2R 11262242 intergenic Cpr47Ed - chr2R 11262288 intergenic Cpr47Ed - chr2R_6_11260001 chr2R_11260001 RAL-440 620 chr2R 11263833 11263839 chr2R 11263966 11263974 4 134 0.0 8.5 4.2 0.8 141 chr2R 11263833 intergenic not near genes chr2R 11263904 intergenic not near genes chr2R 11263974 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-440 621 chr2R 11276796 11276814 chr2R 11276973 11276984 5 176 4.0 3.0 3.5 1.1 188 chr2R 11276796 intergenic not near genes chr2R 11276890 intergenic not near genes chr2R 11276984 intergenic not near genes chr2R_5_11275001 chr2R_11275001 RAL-440 622 chr2R 11415535 11415551 chr2R 11418680 11418701 opus 9 3153 4.5 10.0 7.2 1.1 3166 chr2R 11415535 intron Drip - chr2R 11417118 intron Drip - chr2R 11418701 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-440 623 chr2R 11472644 11472677 chr2R 11473845 11473878 pogo 12 1209 5.5 4.5 5.0 2.0 1234 chr2R 11472644 intergenic not near genes chr2R 11473261 intergenic not near genes chr2R 11473878 intergenic not near genes chr2R_12_11470001 chr2R_11470001 RAL-440 624 chr2R 11494596 11494633 chr2R 11494692 11494723 9 91 2.0 5.0 3.5 2.0 127 chr2R 11494596 intron inv + chr2R 11494660 intron inv + chr2R 11494723 intron inv + chr2R_9_11490001 chr2R_11490001 RAL-440 625 chr2R 11631391 11631413 chr2R 11631476 11631512 8 95 0.0 3.5 1.8 2.9 121 chr2R 11631391 intron CG9005 - chr2R 11631452 intron CG9005 - chr2R 11631512 intron CG9005 - chr2R_8_11630001 chr2R_11630001 RAL-440 626 chr2R 11637321 11637335 chr2R 11637403 11637417 6 88 7.0 9.5 8.2 0.7 96 chr2R 11637321 intron CG9005 - chr2R 11637369 intron CG9005 - chr2R 11637417 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-440 627 chr2R 11665807 11665841 chr2R 11665911 11665927 6 94 5.0 4.0 4.5 1.1 120 chr2R 11665807 intron,5` UTR Roc2 -,Tret1-1 + chr2R 11665867 intron,intron Roc2 -,Tret1-1 + chr2R 11665927 intron,intron Roc2 -,Tret1-1 + chr2R_6_11665001 chr2R_11665001 RAL-440 628 chr2R 11724149 11724183 chr2R 11724240 11724291 6 104 2.0 4.5 3.2 1.4 142 chr2R 11724149 intron pyr + chr2R 11724220 intron pyr + chr2R 11724291 intron pyr + chr2R_6_11720001 chr2R_11720001 RAL-440 629 chr2R 12145915 12145926 chr2R 12148613 12148625 4 2692 25.5 21.5 23.5 0.2 2710 chr2R 12145915 exon Hen1 + chr2R 12147270 intron,intron Hen1 +,CG8878 - chr2R 12148625 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-440 630 chr2R 12185988 12186033 chr2R 12186095 12186138 9 105 1.5 1.5 1.5 3.6 150 chr2R 12185988 intron Cyp6g1 + chr2R 12186063 intron Cyp6g1 + chr2R 12186138 intron Cyp6g1 + chr2R_9_12185001 chr2R_12185001 RAL-440 631 chr2R 12187473 12187494 chr2R 12190084 12190104 6 2613 64.5 50.5 57.5 0.1 2631 chr2R 12187473 exon Cyp6g1 + chr2R 12188788 exon Cyp6g2 - chr2R 12190104 exon Cyp6g2 - chr2R_6_12185001 chr2R_12185001 RAL-440 632 chr2R 12187471 12187517 chr2R 12190106 12190124 17 2623 77.0 52.5 64.8 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_17_12185001 chr2R_12185001 RAL-440 633 chr2R 12217565 12217602 chr2R 12217657 12217703 9 93 2.5 5.5 4.0 1.8 138 chr2R 12217565 intergenic not near genes chr2R 12217634 intergenic not near genes chr2R 12217703 intergenic not near genes chr2R_9_12215001 chr2R_12215001 RAL-440 634 chr2R 12301870 12301908 chr2R 12301952 12301982 14 80 6.0 6.5 6.2 1.9 112 chr2R 12301870 intron CG8850 - chr2R 12301926 intron CG8850 - chr2R 12301982 intron CG8850 - chr2R_14_12300001 chr2R_12300001 RAL-440 635 chr2R 12363377 12363413 chr2R 12363813 12363854 17 441 8.0 0.5 4.2 3.3 477 chr2R 12363377 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363854 intergenic not near genes chr2R_17_12360001 chr2R_12360001 RAL-440 636 chr2R 12501700 12501718 chr2R 12503855 12503879 Rt1c 5 2154 2.0 5.0 3.5 1.1 2179 chr2R 12501700 intron fdl - chr2R 12502790 intron fdl - chr2R 12503879 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-440 637 chr2R 12565279 12565301 chr2R 12565379 12565406 6 102 6.0 0.0 3.0 1.5 127 chr2R 12565279 intergenic CG33775 - chr2R 12565342 intergenic CG33775 - chr2R 12565406 intergenic not near genes chr2R_6_12565001 chr2R_12565001 RAL-440 638 chr2R 12597948 12597990 chr2R 12598053 12598087 11 101 4.0 3.0 3.5 2.4 139 chr2R 12597948 intron Amph + chr2R 12598018 intron Amph + chr2R 12598087 intron Amph + chr2R_11_12595001 chr2R_12595001 RAL-440 639 chr2R 12610709 12610719 chr2R 12610822 12610834 5 113 7.0 4.5 5.8 0.7 125 chr2R 12610709 exon Amph + chr2R 12610772 intron Amph + chr2R 12610834 intron Amph + chr2R_5_12610001 chr2R_12610001 RAL-440 640 chr2R 12610720 12610745 chr2R 12610815 12610851 10 102 3.0 4.0 3.5 2.2 131 chr2R 12610720 exon Amph + chr2R 12610786 intron Amph + chr2R 12610851 intron Amph + chr2R_10_12610001 chr2R_12610001 RAL-440 641 chr2R 12627488 12627500 chr2R 12627590 12627609 7 105 0.0 8.5 4.2 1.3 121 chr2R 12627488 intron CG17760 + chr2R 12627548 intron CG17760 + chr2R 12627609 exon CG17760 + chr2R_7_12625001 chr2R_12625001 RAL-440 642 chr2R 12707499 12707547 chr2R 12715885 12715926 roo 11 8378 0.5 1.0 0.8 6.1 8427 chr2R 12707499 intron CG42663 + chr2R 12711712 intron CG42663 + chr2R 12715926 intron CG42663 + chr2R_11_12710001 chr2R_12710001 RAL-440 643 chr2R 12728851 12728901 chr2R 12728974 12729017 5 117 0.0 2.5 1.2 2.3 166 chr2R 12728851 intron CG42663 + chr2R 12728934 intron CG42663 + chr2R 12729017 intron CG42663 + chr2R_5_12725001 chr2R_12725001 RAL-440 644 chr2R 12789276 12789316 chr2R 12797657 12797670 roo 4 8362 3.0 2.5 2.8 1.1 8394 chr2R 12789276 intron,3` UTR sca +,CR45137 - chr2R 12793473 intron,intron sca +,CR45137 - chr2R 12797670 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-440 645 chr2R 12819446 12819464 chr2R 12824526 12824546 jockey 5 5080 3.5 5.5 4.5 0.9 5100 chr2R 12819446 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-440 646 chr2R 12836374 12836407 chr2R 12836476 12836500 6 98 5.0 3.5 4.2 1.2 126 chr2R 12836374 intergenic not near genes chr2R 12836437 intergenic not near genes chr2R 12836500 intergenic not near genes chr2R_6_12835001 chr2R_12835001 RAL-440 647 chr2R 12887365 12887403 chr2R 12887636 12887674 5 268 1.0 5.0 3.0 1.2 309 chr2R 12887365 intron vg + chr2R 12887520 intron vg + chr2R 12887674 intron vg + chr2R_5_12885001 chr2R_12885001 RAL-440 648 chr2R 12897464 12897486 chr2R 12897555 12897596 10 102 5.0 2.5 3.8 2.1 132 chr2R 12897464 intron vg + chr2R 12897530 intron vg + chr2R 12897596 intron vg + chr2R_10_12895001 chr2R_12895001 RAL-440 649 chr2R 12951666 12951677 chr2R 12951755 12951774 4 91 0.5 5.5 3.0 1.0 108 chr2R 12951666 intron,intron CG44251 -,CG44250 - chr2R 12951720 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-440 650 chr2R 13129176 13129221 chr2R 13129269 13129318 10 90 4.0 1.5 2.8 2.6 142 chr2R 13129176 intergenic CG3955 -,CG13326 - chr2R 13129247 intergenic CG3955 -,CG13326 - chr2R 13129318 intergenic CG13326 -,CG3955 - chr2R_10_13125001 chr2R_13125001 RAL-440 651 chr2R 13136820 13136861 chr2R 13141638 13141673 Doc 7 4812 6.0 3.5 4.8 1.2 4853 chr2R 13136820 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141673 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-440 652 chr2R 13167427 13167441 chr2R 13167540 13167555 5 113 6.0 0.0 3.0 1.2 128 chr2R 13167427 intron GLaz - chr2R 13167491 intron GLaz - chr2R 13167555 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-440 653 chr2R 13345568 13345616 chr2R 13346156 13346173 20 578 3.5 6.0 4.8 3.4 605 chr2R 13345568 intron CR44206 - chr2R 13345870 intron CR44206 - chr2R 13346173 intron CR44206 - chr2R_20_13345001 chr2R_13345001 RAL-440 654 chr2R 13418302 13418319 chr2R 13418408 13418421 6 104 1.5 4.5 3.0 1.5 119 chr2R 13418302 intron CG42321 - chr2R 13418362 intron CG42321 - chr2R 13418421 intron CG42321 - chr2R_6_13415001 chr2R_13415001 RAL-440 655 chr2R 13431481 13431518 chr2R 13431579 13431603 5 96 5.5 2.0 3.8 1.0 122 chr2R 13431481 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431603 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-440 656 chr2R 13432926 13432956 chr2R 13433021 13433031 10 91 2.0 5.5 3.8 2.1 105 chr2R 13432926 intron CG42321 - chr2R 13432978 intron CG42321 - chr2R 13433031 intron,5` UTR CG42321 -,CG30065 + chr2R_10_13430001 chr2R_13430001 RAL-440 657 chr2R 13439106 13439132 chr2R 13439230 13439290 5 148 7.5 0.0 3.8 1.0 184 chr2R 13439106 intergenic CG42321 -,cnn - chr2R 13439198 intergenic cnn -,CG42321 - chr2R 13439290 intergenic cnn -,CG42321 - chr2R_5_13435001 chr2R_13435001 RAL-440 658 chr2R 13580482 13580531 chr2R 13580848 13580877 jockey 5 355 1.5 4.5 3.0 1.2 395 chr2R 13580482 3` UTR CG6191 - chr2R 13580680 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580877 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-440 659 chr2R 13728114 13728160 chr2R 13735790 13735837 opus 8 7674 2.0 3.0 2.5 2.3 7723 chr2R 13728114 intron fas + chr2R 13731976 intron fas + chr2R 13735837 intron fas + chr2R_8_13730001 chr2R_13730001 RAL-440 660 chr2R 13749499 13749530 chr2R 13749592 13749626 12 97 4.5 4.0 4.2 2.3 127 chr2R 13749499 intergenic fas + chr2R 13749562 intergenic fas + chr2R 13749626 intergenic fas + chr2R_12_13745001 chr2R_13745001 RAL-440 661 chr2R 13817641 13817691 chr2R 13817740 13817778 6 98 1.5 0.0 0.8 3.3 137 chr2R 13817641 intron stj + chr2R 13817710 intron stj + chr2R 13817778 intron stj + chr2R_6_13815001 chr2R_13815001 RAL-440 662 chr2R 13861438 13861456 chr2R 13861521 13861555 4 90 2.0 5.5 3.8 0.8 117 chr2R 13861438 intron CG16935 - chr2R 13861496 intron CG16935 - chr2R 13861555 intron CG16935 - chr2R_4_13860001 chr2R_13860001 RAL-440 663 chr2R 13905600 13905635 chr2R 13907585 13907591 Rt1a 6 1983 4.5 1.5 3.0 1.5 1991 chr2R 13905600 intron shot - chr2R 13906596 intron shot - chr2R 13907591 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-440 664 chr2R 13923178 13923230 chr2R 13923288 13923313 7 94 2.5 3.5 3.0 1.8 135 chr2R 13923178 intron shot - chr2R 13923246 intron shot - chr2R 13923313 intron shot - chr2R_7_13920001 chr2R_13920001 RAL-440 665 chr2R 13925829 13925868 chr2R 13926023 13926064 13 191 5.0 3.5 4.2 2.5 235 chr2R 13925829 intron shot - chr2R 13925946 intron shot - chr2R 13926064 intron shot - chr2R_13_13925001 chr2R_13925001 RAL-440 666 chr2R 13993272 13993305 chr2R 13993353 13993393 4 84 5.5 3.0 4.2 0.8 121 chr2R 13993272 intron mam + chr2R 13993332 intron mam + chr2R 13993393 intron mam + chr2R_4_13990001 chr2R_13990001 RAL-440 667 chr2R 14014968 14014997 chr2R 14015768 14015782 9 804 0.5 2.0 1.2 4.1 814 chr2R 14014968 intron mam + chr2R 14015375 intron mam + chr2R 14015782 intron mam + chr2R_9_14015001 chr2R_14015001 RAL-440 668 chr2R 14086655 14086662 chr2R 14086750 14086761 4 97 0.0 11.0 5.5 0.6 106 chr2R 14086655 intron Prosap - chr2R 14086708 intron Prosap - chr2R 14086761 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-440 669 chr2R 14277573 14277601 chr2R 14277675 14277703 12 99 5.5 8.0 6.8 1.5 130 chr2R 14277573 5` UTR Ih + chr2R 14277638 5` UTR Ih + chr2R 14277703 5` UTR Ih + chr2R_12_14275001 chr2R_14275001 RAL-440 670 chr2R 14307425 14307449 chr2R 14308053 14308072 5 624 5.0 1.5 3.2 1.2 647 chr2R 14307425 intergenic not near genes chr2R 14307748 intergenic Shroom + chr2R 14308072 intergenic Shroom + chr2R_5_14305001 chr2R_14305001 RAL-440 671 chr2R 14352704 14352711 chr2R 14352783 14352821 4 99 2.5 4.5 3.5 0.9 117 chr2R 14352704 exon CG8613 + chr2R 14352762 intron CG8613 + chr2R 14352821 intron CG8613 + chr2R_4_14350001 chr2R_14350001 RAL-440 672 chr2R 14357548 14357753 chr2R 14357654 14357884 12 116 2.0 1.5 1.8 4.3 336 chr2R 14357548 intergenic CG8617 -,Arc1 - chr2R 14357716 intergenic Arc1 -,CG8617 - chr2R 14357884 intergenic Arc1 - chr2R_12_14355001 chr2R_14355001 RAL-440 673 chr2R 14373502 14373530 chr2R 14373596 14373618 6 87 3.5 7.0 5.2 1.0 116 chr2R 14373502 exon Obp50d + chr2R 14373560 exon Obp50d + chr2R 14373618 exon Obp50d + chr2R_6_14370001 chr2R_14370001 RAL-440 674 chr2R 14427226 14427253 chr2R 14427317 14427351 8 96 2.5 3.5 3.0 2.0 125 chr2R 14427226 intergenic phyl - chr2R 14427288 intergenic phyl - chr2R 14427351 3` UTR phyl - chr2R_8_14425001 chr2R_14425001 RAL-440 675 chr2R 14467303 14467318 chr2R 14476470 14476476 roo 5 9167 1.5 5.5 3.5 1.1 9173 chr2R 14467303 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-440 676 chr2R 14467319 14467327 chr2R 14476463 14476505 roo 6 9161 1.5 4.5 3.0 1.5 9186 chr2R 14467319 intergenic not near genes chr2R 14471912 intergenic not near genes chr2R 14476505 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-440 677 chr2R 14538953 14538983 chr2R 14539040 14539054 4 75 5.5 5.0 5.2 0.6 101 chr2R 14538953 intron ttv + chr2R 14539004 intron ttv + chr2R 14539054 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-440 678 chr2R 14556844 14556864 chr2R 14556946 14556964 5 102 1.5 1.5 1.5 2.0 120 chr2R 14556844 intron ttv + chr2R 14556904 intron ttv + chr2R 14556964 intron ttv + chr2R_5_14555001 chr2R_14555001 RAL-440 679 chr2R 14733402 14733625 chr2R 14733485 14733702 20 90 1.5 1.5 1.5 8.0 300 chr2R 14733402 intergenic not near genes chr2R 14733552 intergenic not near genes chr2R 14733702 intergenic not near genes chr2R_20_14730001 chr2R_14730001 RAL-440 680 chr2R 14873696 14873721 chr2R 14875223 14875259 4 1530 1.0 1.5 1.2 1.8 1563 chr2R 14873696 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874478 exon Cyp6a17 + chr2R 14875259 exon Cyp6a17 + chr2R_4_14870001 chr2R_14870001 RAL-440 681 chr2R 14889197 14889227 chr2R 14897815 14897844 Max-element 7 8618 7.5 0.0 3.8 1.5 8647 chr2R 14889197 intergenic Cyp6a8 - chr2R 14893520 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_7_14890001 chr2R_14890001 RAL-440 682 chr2R 14906476 14906518 chr2R 14906596 14906633 14 114 4.0 4.0 4.0 2.8 157 chr2R 14906476 intron CG10249 - chr2R 14906554 intron CG10249 - chr2R 14906633 intron CG10249 - chr2R_14_14905001 chr2R_14905001 RAL-440 683 chr2R 14911682 14911727 chr2R 14911824 14911870 9 136 5.0 6.0 5.5 1.4 188 chr2R 14911682 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911870 intron CG10249 - chr2R_9_14910001 chr2R_14910001 RAL-440 684 chr2R 14917844 14917877 chr2R 14917933 14917982 10 99 4.0 4.5 4.2 1.9 138 chr2R 14917844 intron CG10249 - chr2R 14917913 intron CG10249 - chr2R 14917982 intron CG10249 - chr2R_10_14915001 chr2R_14915001 RAL-440 685 chr2R 14922137 14922169 chr2R 14922221 14922265 13 87 6.0 4.0 5.0 2.2 128 chr2R 14922137 intron CG10249 - chr2R 14922201 intron CG10249 - chr2R 14922265 intron CG10249 - chr2R_13_14920001 chr2R_14920001 RAL-440 686 chr2R 14957747 14957768 chr2R 14958192 14958231 4 462 1.0 3.0 2.0 1.3 484 chr2R 14957747 intron aPKC - chr2R 14957989 intron aPKC - chr2R 14958231 intron aPKC - chr2R_4_14955001 chr2R_14955001 RAL-440 687 chr2R 14968428 14968472 chr2R 14968530 14968563 8 87 2.0 7.5 4.8 1.4 135 chr2R 14968428 intron ckn + chr2R 14968496 intron ckn + chr2R 14968563 intron ckn + chr2R_8_14965001 chr2R_14965001 RAL-440 688 chr2R 15004724 15004753 chr2R 15005063 15005101 jockey 6 342 0.0 5.5 2.8 1.6 377 chr2R 15004724 intergenic not near genes chr2R 15004912 intergenic not near genes chr2R 15005101 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-440 689 chr2R 15015467 15015485 chr2R 15022882 15022927 mdg1 11 7437 4.5 3.5 4.0 2.2 7460 chr2R 15015467 intron hbs + chr2R 15019197 intron hbs + chr2R 15022927 intron hbs + chr2R_11_15015001 chr2R_15015001 RAL-440 690 chr2R 15051067 15051108 chr2R 15051166 15051210 15 92 7.5 7.0 7.2 1.8 143 chr2R 15051067 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051210 intergenic not near genes chr2R_15_15050001 chr2R_15050001 RAL-440 691 chr2R 15054741 15054768 chr2R 15054813 15054841 7 73 5.0 5.0 5.0 1.2 100 chr2R 15054741 intergenic not near genes chr2R 15054791 intergenic not near genes chr2R 15054841 intergenic not near genes chr2R_7_15050001 chr2R_15050001 RAL-440 692 chr2R 15084977 15085001 chr2R 15092038 15092063 297 7 7064 2.5 2.5 2.5 2.0 7086 chr2R 15084977 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092063 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-440 693 chr2R 15119306 15119347 chr2R 15127799 15127820 Tirant 4 8486 6.5 9.0 7.8 0.5 8514 chr2R 15119306 intron chn + chr2R 15123563 intron chn + chr2R 15127820 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-440 694 chr2R 15196072 15196121 chr2R 15196187 15196226 10 102 5.5 2.0 3.8 2.1 154 chr2R 15196072 intergenic not near genes chr2R 15196149 intergenic not near genes chr2R 15196226 intergenic not near genes chr2R_10_15195001 chr2R_15195001 RAL-440 695 chr2R 15201215 15201258 chr2R 15201326 15201369 12 108 5.0 1.5 3.2 2.9 154 chr2R 15201215 intergenic GPHR -,CG11807 + chr2R 15201292 5` UTR CG11807 + chr2R 15201369 5` UTR CG11807 + chr2R_12_15200001 chr2R_15200001 RAL-440 696 chr2R 15230354 15230358 chr2R 15230666 15230676 4 312 10.5 0.5 5.5 0.6 322 chr2R 15230354 intron,5` UTR Fs -,CR44370 + chr2R 15230515 intron,5` UTR Fs -,CR44370 + chr2R 15230676 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-440 697 chr2R 15276599 15276622 chr2R 15276691 15276715 6 99 1.0 6.0 3.5 1.3 116 chr2R 15276599 intron Trpm - chr2R 15276657 intron Trpm - chr2R 15276715 intron Trpm - chr2R_6_15275001 chr2R_15275001 RAL-440 698 chr2R 15573006 15573023 chr2R 15573129 15573137 11 122 10.5 0.0 5.2 1.8 131 chr2R 15573006 3` UTR CG30466 + chr2R 15573072 3` UTR CG30466 + chr2R 15573137 3` UTR CG30466 + chr2R_11_15570001 chr2R_15570001 RAL-440 699 chr2R 15587538 15587554 chr2R 15587672 15587677 4 132 13.0 1.0 7.0 0.5 139 chr2R 15587538 intergenic not near genes chr2R 15587608 intergenic not near genes chr2R 15587677 intergenic not near genes chr2R_4_15585001 chr2R_15585001 RAL-440 700 chr2R 15587557 15587574 chr2R 15587670 15587706 8 129 8.5 1.0 4.8 1.4 149 chr2R 15587557 intergenic not near genes chr2R 15587632 intergenic not near genes chr2R 15587706 intergenic not near genes chr2R_8_15585001 chr2R_15585001 RAL-440 701 chr2R 15606121 15606130 chr2R 15606208 15606212 6 90 3.5 2.5 3.0 1.5 91 chr2R 15606121 intergenic not near genes chr2R 15606166 intergenic not near genes chr2R 15606212 intergenic not near genes chr2R_6_15605001 chr2R_15605001 RAL-440 702 chr2R 15685356 15685385 chr2R 15685467 15685486 7 111 4.0 2.0 3.0 1.8 130 chr2R 15685356 intron,exon Ranbp11 +,CG30082 - chr2R 15685421 intron,intron Ranbp11 +,CG30082 - chr2R 15685486 intron,intron Ranbp11 +,CG30082 - chr2R_7_15685001 chr2R_15685001 RAL-440 703 chr2R 15697882 15697896 chr2R 15697981 15697997 4 100 3.5 0.0 1.8 1.4 115 chr2R 15697882 exon CG33462 + chr2R 15697940 3` UTR CG33462 + chr2R 15697997 3` UTR CG33462 + chr2R_4_15695001 chr2R_15695001 RAL-440 704 chr2R 15712690 15712719 chr2R 15712788 15712822 4 99 2.0 4.0 3.0 1.0 132 chr2R 15712690 intergenic CG30083 - chr2R 15712756 intergenic CG30083 - chr2R 15712822 intergenic CG30083 - chr2R_4_15710001 chr2R_15710001 RAL-440 705 chr2R 15740482 15740514 chr2R 15740559 15740592 6 82 2.5 2.5 2.5 1.7 110 chr2R 15740482 intron CG30089 + chr2R 15740537 intron CG30089 + chr2R 15740592 intron CG30089 + chr2R_6_15740001 chr2R_15740001 RAL-440 706 chr2R 16614111 16614155 chr2R 16614348 16614394 11 234 3.0 2.0 2.5 3.1 283 chr2R 16614111 intron CG5065 + chr2R 16614252 intron CG5065 + chr2R 16614394 intron CG5065 + chr2R_11_16610001 chr2R_16610001 RAL-440 707 chr2R 16701313 16701343 chr2R 16701450 16701490 9 143 4.0 2.0 3.0 2.2 177 chr2R 16701313 intron CG30463 - chr2R 16701402 intron CG30463 - chr2R 16701490 intron CG30463 - chr2R_9_16700001 chr2R_16700001 RAL-440 708 chr2R 16833828 16833835 chr2R 16833917 16833945 4 102 9.5 6.0 7.8 0.5 117 chr2R 16833828 5` UTR CR43650 + chr2R 16833886 5` UTR CR43650 + chr2R 16833945 5` UTR CR43650 + chr2R_4_16830001 chr2R_16830001 RAL-440 709 chr2R 16911767 16911776 chr2R 16913067 16913079 4 1299 5.5 13.0 9.2 0.4 1312 chr2R 16911767 intergenic not near genes chr2R 16912423 intergenic not near genes chr2R 16913079 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-440 710 chr2R 16933320 16933358 chr2R 16933429 16933474 9 112 5.0 2.5 3.8 1.9 154 chr2R 16933320 intron Pkc53E + chr2R 16933397 intron Pkc53E + chr2R 16933474 intron Pkc53E + chr2R_9_16930001 chr2R_16930001 RAL-440 711 chr2R 17086574 17086605 chr2R 17086657 17086692 9 86 1.0 4.0 2.5 2.6 118 chr2R 17086574 intron CG30460 - chr2R 17086633 intron CG30460 - chr2R 17086692 intron CG30460 - chr2R_9_17085001 chr2R_17085001 RAL-440 712 chr2R 17147249 17147267 chr2R 17152280 17152313 jockey 8 5043 6.5 3.5 5.0 1.3 5064 chr2R 17147249 intergenic not near genes chr2R 17149781 intergenic not near genes chr2R 17152313 intergenic not near genes chr2R_8_17145001 chr2R_17145001 RAL-440 713 chr2R 17161341 17161356 chr2R 17161568 17161576 4 224 6.0 0.0 3.0 1.0 235 chr2R 17161341 intergenic not near genes chr2R 17161458 intergenic not near genes chr2R 17161576 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-440 714 chr2R 17236506 17236537 chr2R 17241720 17241751 copia 7 5210 5.0 5.5 5.2 1.1 5245 chr2R 17236506 intron mbl + chr2R 17239128 intron mbl + chr2R 17241751 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-440 715 chr2R 17389252 17389301 chr2R 17389363 17389369 6 94 2.5 2.0 2.2 1.9 117 chr2R 17389252 intergenic CR44344 - chr2R 17389310 intergenic CR44344 - chr2R 17389369 intergenic CR44344 - chr2R_6_17385001 chr2R_17385001 RAL-440 716 chr2R 17395264 17395316 chr2R 17395362 17395382 18 85 4.0 3.0 3.5 4.0 118 chr2R 17395264 intron Sip1 + chr2R 17395323 intron Sip1 + chr2R 17395382 intron Sip1 + chr2R_18_17395001 chr2R_17395001 RAL-440 717 chr2R 17459001 17459038 chr2R 17459091 17459133 11 97 4.0 4.0 4.0 2.2 132 chr2R 17459001 intron CG14478 + chr2R 17459067 intron CG14478 + chr2R 17459133 intron CG14478 + chr2R_11_17455001 chr2R_17455001 RAL-440 718 chr2R 17470343 17470354 chr2R 17470420 17470452 4 88 3.0 3.0 3.0 1.0 109 chr2R 17470343 intron qkr54B + chr2R 17470398 intron qkr54B + chr2R 17470452 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-440 719 chr2R 17485907 17485918 chr2R 17490696 17490699 F-element 4 4786 5.0 1.0 3.0 1.0 4792 chr2R 17485907 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488303 intron NT5E-2 + chr2R 17490699 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-440 720 chr2R 17561581 17561610 chr2R 17561680 17561683 6 91 2.5 4.0 3.2 1.4 102 chr2R 17561581 exon Klp54D + chr2R 17561632 intron Klp54D + chr2R 17561683 intron Klp54D + chr2R_6_17560001 chr2R_17560001 RAL-440 721 chr2R 17629590 17629630 chr2R 17629684 17629718 13 90 3.5 3.0 3.2 3.1 128 chr2R 17629590 intron,intron CG10936 -,rhi - chr2R 17629654 intron,intron CG10936 -,rhi - chr2R 17629718 intron,intron CG10936 -,rhi - chr2R_13_17625001 chr2R_17625001 RAL-440 722 chr2R 17655196 17655231 chr2R 17655281 17655304 6 81 3.0 4.5 3.8 1.2 108 chr2R 17655196 intron CCHa1-R - chr2R 17655250 intron CCHa1-R - chr2R 17655304 intron CCHa1-R - chr2R_6_17655001 chr2R_17655001 RAL-440 723 chr2R 17784015 17784057 chr2R 17784267 17784300 pogo 11 245 3.5 4.0 3.8 2.3 285 chr2R 17784015 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784300 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-440 724 chr2R 17975636 17975678 chr2R 17975881 17975923 8 239 5.0 5.5 5.2 1.3 287 chr2R 17975636 3` UTR dpr13 - chr2R 17975780 3` UTR dpr13 - chr2R 17975923 3` UTR dpr13 - chr2R_8_17975001 chr2R_17975001 RAL-440 725 chr2R 18127361 18127406 chr2R 18127493 18127527 12 128 1.5 4.5 3.0 3.0 166 chr2R 18127361 intron Spn55B + chr2R 18127444 intron Spn55B + chr2R 18127527 intron Spn55B + chr2R_12_18125001 chr2R_18125001 RAL-440 726 chr2R 18204122 18204154 chr2R 18204227 18204254 7 103 2.0 2.0 2.0 2.3 132 chr2R 18204122 intergenic not near genes chr2R 18204188 intergenic not near genes chr2R 18204254 intergenic not near genes chr2R_7_18200001 chr2R_18200001 RAL-440 727 chr2R 18245615 18245654 chr2R 18245702 18245747 4 89 0.0 3.0 1.5 1.6 132 chr2R 18245615 intergenic not near genes chr2R 18245681 intergenic CR44420 - chr2R 18245747 intergenic CR44420 - chr2R_4_18245001 chr2R_18245001 RAL-440 728 chr2R 18314392 18314433 chr2R 18314485 18314514 10 90 0.5 3.5 2.0 3.3 122 chr2R 18314392 intron sbb - chr2R 18314453 intron sbb - chr2R 18314514 intron sbb - chr2R_10_18310001 chr2R_18310001 RAL-440 729 chr2R 18358383 18358405 chr2R 18372604 18372629 roo 10 14224 5.0 6.0 5.5 1.5 14246 chr2R 18358383 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372629 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-440 730 chr2R 18358409 18358418 chr2R 18372598 18372640 roo 4 14212 4.0 6.0 5.0 0.7 14231 chr2R 18358409 intergenic not near genes chr2R 18365524 intergenic not near genes chr2R 18372640 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-440 731 chr2R 18376734 18376753 chr2R 18376821 18376847 5 94 3.0 5.0 4.0 1.0 113 chr2R 18376734 intergenic not near genes chr2R 18376790 intergenic not near genes chr2R 18376847 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-440 732 chr2R 18402492 18402510 chr2R 18402590 18402607 6 99 8.0 4.0 6.0 0.9 115 chr2R 18402492 intergenic not near genes chr2R 18402550 intergenic not near genes chr2R 18402607 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-440 733 chr2R 18402516 18402532 chr2R 18402588 18402626 7 91 2.0 3.5 2.8 1.8 110 chr2R 18402516 intergenic not near genes chr2R 18402571 intergenic not near genes chr2R 18402626 intergenic not near genes chr2R_7_18400001 chr2R_18400001 RAL-440 734 chr2R 18405735 18405783 chr2R 18405836 18405877 5 95 0.0 0.0 0.0 5.0 142 chr2R 18405735 intergenic GstE6 +,GstE5 + chr2R 18405806 intergenic GstE6 +,GstE5 + chr2R 18405877 intergenic GstE6 + chr2R_5_18405001 chr2R_18405001 RAL-440 735 chr2R 18408280 18408316 chr2R 18408404 18408438 8 125 4.0 2.5 3.2 1.9 158 chr2R 18408280 exon GstE8 + chr2R 18408359 exon GstE8 + chr2R 18408438 exon GstE8 + chr2R_8_18405001 chr2R_18405001 RAL-440 736 chr2R 18575797 18575831 chr2R 18581985 18581995 3S18 5 6189 2.0 3.0 2.5 1.4 6198 chr2R 18575797 intron GEFmeso - chr2R 18578896 intron GEFmeso - chr2R 18581995 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-440 737 chr2R 18590854 18590895 chr2R 18600020 18600059 roo 5 9165 3.0 1.0 2.0 1.7 9205 chr2R 18590854 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600059 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-440 738 chr2R 18629268 18629310 chr2R 18629401 18629442 11 126 4.0 5.5 4.8 1.9 174 chr2R 18629268 3` UTR Eip55E + chr2R 18629355 3` UTR Eip55E + chr2R 18629442 intergenic Eip55E +,CG5482 - chr2R_11_18625001 chr2R_18625001 RAL-440 739 chr2R 18675160 18675170 chr2R 18675248 18675268 4 93 1.0 10.5 5.8 0.6 108 chr2R 18675160 intergenic not near genes chr2R 18675214 intergenic not near genes chr2R 18675268 intergenic not near genes chr2R_4_18675001 chr2R_18675001 RAL-440 740 chr2R 18678510 18678540 chr2R 18678650 18678656 5 133 4.0 0.0 2.0 1.7 146 chr2R 18678510 intergenic CG44434 -,CG44435 - chr2R 18678583 intergenic CG44434 -,CG44435 - chr2R 18678656 intergenic CG44434 -,CG44435 - chr2R_5_18675001 chr2R_18675001 RAL-440 741 chr2R 18738188 18738230 chr2R 18738284 18738311 8 87 1.5 1.0 1.2 3.6 123 chr2R 18738188 intron Hs3st-A + chr2R 18738250 intron Hs3st-A + chr2R 18738311 intron Hs3st-A + chr2R_8_18735001 chr2R_18735001 RAL-440 742 chr2R 18808144 18808176 chr2R 18808232 18808246 8 84 3.5 1.5 2.5 2.3 102 chr2R 18808144 intergenic CG15096 - chr2R 18808195 intergenic CG15096 - chr2R 18808246 intergenic CG15096 - chr2R_8_18805001 chr2R_18805001 RAL-440 743 chr2R 18826566 18826591 chr2R 18826653 18826675 8 86 4.0 5.0 4.5 1.5 109 chr2R 18826566 intron CG15097 - chr2R 18826620 intron CG15097 - chr2R 18826675 intron CG15097 - chr2R_8_18825001 chr2R_18825001 RAL-440 744 chr2R 18863296 18863349 chr2R 18863398 18863428 12 91 5.0 2.5 3.8 2.5 132 chr2R 18863296 intergenic CG43069 + chr2R 18863362 intergenic CG43069 + chr2R 18863428 intergenic CG43069 +,CG43070 + chr2R_12_18860001 chr2R_18860001 RAL-440 745 chr2R 18871640 18871674 chr2R 18871742 18871746 4 92 3.0 1.0 2.0 1.3 106 chr2R 18871640 intergenic not near genes chr2R 18871693 intergenic not near genes chr2R 18871746 intergenic not near genes chr2R_4_18870001 chr2R_18870001 RAL-440 746 chr2R 18926491 18926522 chr2R 18926591 18926619 7 103 3.5 2.0 2.8 1.8 128 chr2R 18926491 intron sano + chr2R 18926555 intron sano + chr2R 18926619 intron sano + chr2R_7_18925001 chr2R_18925001 RAL-440 747 chr2R 18948039 18948071 chr2R 18948137 18948177 4 104 3.5 0.0 1.8 1.4 138 chr2R 18948039 intron sano + chr2R 18948108 intron sano + chr2R 18948177 intron sano + chr2R_4_18945001 chr2R_18945001 RAL-440 748 chr2R 18953172 18953187 chr2R 18953257 18953292 7 101 4.5 3.0 3.8 1.5 120 chr2R 18953172 intron sano + chr2R 18953232 intron sano + chr2R 18953292 intron sano + chr2R_7_18950001 chr2R_18950001 RAL-440 749 chr2R 19040738 19040760 chr2R 19040816 19040860 7 95 0.0 4.0 2.0 2.3 122 chr2R 19040738 intergenic not near genes chr2R 19040799 intergenic not near genes chr2R 19040860 intergenic not near genes chr2R_7_19040001 chr2R_19040001 RAL-440 750 chr2R 19069940 19069960 chr2R 19070049 19070080 4 122 3.5 1.5 2.5 1.1 140 chr2R 19069940 intron 5-HT1A + chr2R 19070010 intron 5-HT1A + chr2R 19070080 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-440 751 chr2R 19112773 19112812 chr2R 19112956 19112984 10 177 4.5 0.0 2.2 3.1 211 chr2R 19112773 intron 5-HT1A + chr2R 19112878 intron 5-HT1A + chr2R 19112984 intron 5-HT1A + chr2R_10_19110001 chr2R_19110001 RAL-440 752 chr2R 19168720 19168736 chr2R 19168819 19168837 7 99 4.5 1.0 2.8 1.8 117 chr2R 19168720 intron CG10737 + chr2R 19168778 intron CG10737 + chr2R 19168837 intron CG10737 + chr2R_7_19165001 chr2R_19165001 RAL-440 753 chr2R 19267341 19267364 chr2R 19267452 19267487 12 117 3.5 2.5 3.0 3.0 146 chr2R 19267341 intergenic not near genes chr2R 19267414 intergenic not near genes chr2R 19267487 intergenic not near genes chr2R_12_19265001 chr2R_19265001 RAL-440 754 chr2R 19383999 19384045 chr2R 19384123 19384163 13 119 6.0 5.0 5.5 2.0 164 chr2R 19383999 exon CG10073 + chr2R 19384081 exon CG10073 + chr2R 19384163 intron CG10073 + chr2R_13_19380001 chr2R_19380001 RAL-440 755 chr2R 19385099 19385144 chr2R 19385653 19385704 6 556 0.0 1.5 0.8 3.3 605 chr2R 19385099 intergenic CG10073 + chr2R 19385402 intergenic CG10073 + chr2R 19385704 intergenic CG10081 + chr2R_6_19385001 chr2R_19385001 RAL-440 756 chr2R 19535737 19535769 chr2R 19535924 19535963 8 191 1.0 5.5 3.2 1.9 226 chr2R 19535737 intron sm - chr2R 19535850 intron sm - chr2R 19535963 intron sm - chr2R_8_19535001 chr2R_19535001 RAL-440 757 chr2R 19588730 19588778 chr2R 19588828 19588873 12 92 4.0 4.0 4.0 2.4 143 chr2R 19588730 intron sm - chr2R 19588802 intron sm - chr2R 19588873 intron sm - chr2R_12_19585001 chr2R_19585001 RAL-440 758 chr2R 19776586 19776613 chr2R 19779917 19779956 jockey 10 3334 3.5 4.0 3.8 2.1 3370 chr2R 19776586 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779956 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-440 759 chr2R 19914828 19914864 chr2R 19922260 19922271 mdg1 5 7422 3.5 2.5 3.0 1.2 7443 chr2R 19914828 intergenic not near genes chr2R 19918550 intergenic not near genes chr2R 19922271 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-440 760 chr2R 19997034 19997052 chr2R 19997101 19997124 7 74 1.5 2.0 1.8 2.5 90 chr2R 19997034 intergenic not near genes chr2R 19997079 intergenic not near genes chr2R 19997124 intergenic not near genes chr2R_7_19995001 chr2R_19995001 RAL-440 761 chr2R 20069226 20069254 chr2R 20071874 20071912 opus 10 2652 0.5 1.5 1.0 5.0 2686 chr2R 20069226 intergenic not near genes chr2R 20070569 intergenic not near genes chr2R 20071912 intergenic not near genes chr2R_10_20070001 chr2R_20070001 RAL-440 762 chr2R 20079824 20079871 chr2R 20079919 20079963 5 88 0.0 4.5 2.2 1.6 139 chr2R 20079824 intergenic not near genes chr2R 20079894 intergenic not near genes chr2R 20079963 intergenic not near genes chr2R_5_20075001 chr2R_20075001 RAL-440 763 chr2R 20125727 20125739 chr2R 20125834 20125862 8 118 1.5 5.0 3.2 1.9 135 chr2R 20125727 intergenic not near genes chr2R 20125794 intergenic not near genes chr2R 20125862 intergenic not near genes chr2R_8_20125001 chr2R_20125001 RAL-440 764 chr2R 20223935 20223979 chr2R 20224035 20224084 10 93 5.0 2.5 3.8 2.1 149 chr2R 20223935 intergenic not near genes chr2R 20224010 intergenic not near genes chr2R 20224084 intergenic not near genes chr2R_10_20220001 chr2R_20220001 RAL-440 765 chr2R 20326754 20326785 chr2R 20326836 20326848 7 78 4.5 0.5 2.5 2.0 94 chr2R 20326754 5` UTR MED8 - chr2R 20326801 5` UTR MED8 - chr2R 20326848 intergenic MED8 -,CG8929 + chr2R_7_20325001 chr2R_20325001 RAL-440 766 chr2R 20403018 20403036 chr2R 20403108 20403116 5 84 1.5 3.0 2.2 1.6 98 chr2R 20403018 intergenic not near genes chr2R 20403067 intergenic not near genes chr2R 20403116 intergenic not near genes chr2R_5_20400001 chr2R_20400001 RAL-440 767 chr2R 20483894 20483945 chr2R 20484287 20484333 16 386 3.0 3.5 3.2 3.8 439 chr2R 20483894 intergenic not near genes chr2R 20484114 intergenic not near genes chr2R 20484333 intergenic not near genes chr2R_16_20480001 chr2R_20480001 RAL-440 768 chr2R 20502269 20502306 chr2R 20502402 20502440 12 128 6.5 4.5 5.5 1.8 171 chr2R 20502269 intergenic not near genes chr2R 20502354 intergenic not near genes chr2R 20502440 intergenic not near genes chr2R_12_20500001 chr2R_20500001 RAL-440 769 chr2R 20508158 20508204 chr2R 20508256 20508297 9 88 1.5 5.0 3.2 2.1 139 chr2R 20508158 intergenic CR44646 + chr2R 20508228 intergenic CR44646 + chr2R 20508297 intergenic CR44646 + chr2R_9_20505001 chr2R_20505001 RAL-440 770 chr2R 20633091 20633120 chr2R 20633188 20633230 4 96 4.5 6.5 5.5 0.6 139 chr2R 20633091 5` UTR Rcd6 - chr2R 20633160 5` UTR Rcd6 - chr2R 20633230 5` UTR Rcd6 - chr2R_4_20630001 chr2R_20630001 RAL-440 771 chr2R 20725043 20725079 chr2R 20725170 20725220 16 130 2.0 2.0 2.0 5.3 177 chr2R 20725043 intron dpr + chr2R 20725132 intron dpr + chr2R 20725220 intron dpr + chr2R_16_20725001 chr2R_20725001 RAL-440 772 chr2R 20739430 20739474 chr2R 20744209 20744244 F-element 7 4777 3.5 1.0 2.2 2.2 4814 chr2R 20739430 intron dpr + chr2R 20741837 intron dpr + chr2R 20744244 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-440 773 chr2R 20783312 20783328 chr2R 20788089 20788090 F-element 6 4781 5.5 4.5 5.0 1.0 4778 chr2R 20783312 intergenic not near genes chr2R 20785701 intergenic not near genes chr2R 20788090 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-440 774 chr2R 20848917 20848959 chr2R 20849013 20849056 14 98 2.5 5.0 3.8 2.9 139 chr2R 20848917 exon CG17999 - chr2R 20848986 intron CG17999 - chr2R 20849056 intron CG17999 - chr2R_14_20845001 chr2R_20845001 RAL-440 775 chr2R 20931964 20931987 chr2R 20932047 20932076 10 85 2.5 3.0 2.8 2.6 112 chr2R 20931964 intron Rx + chr2R 20932020 intron Rx + chr2R 20932076 intron Rx + chr2R_10_20930001 chr2R_20930001 RAL-440 776 chr2R 20962172 20962196 chr2R 20962402 20962438 15 235 4.0 3.5 3.8 3.1 266 chr2R 20962172 intergenic not near genes chr2R 20962305 intergenic not near genes chr2R 20962438 intergenic not near genes chr2R_15_20960001 chr2R_20960001 RAL-440 777 chr2R 20962905 20962936 chr2R 20963010 20963052 12 110 3.0 3.5 3.2 2.9 147 chr2R 20962905 intergenic not near genes chr2R 20962978 intergenic not near genes chr2R 20963052 intergenic not near genes chr2R_12_20960001 chr2R_20960001 RAL-440 778 chr2R 20967006 20967060 chr2R 20967102 20967148 6 86 1.5 0.0 0.8 3.3 142 chr2R 20967006 intergenic not near genes chr2R 20967077 intergenic not near genes chr2R 20967148 intergenic not near genes chr2R_6_20965001 chr2R_20965001 RAL-440 779 chr2R 20980652 20980670 chr2R 20980772 20980801 8 122 3.5 6.0 4.8 1.4 149 chr2R 20980652 intron CG9313 + chr2R 20980726 intron CG9313 + chr2R 20980801 intron CG9313 + chr2R_8_20980001 chr2R_20980001 RAL-440 780 chr2R 21043648 21043682 chr2R 21043738 21043793 4 92 5.5 0.0 2.8 1.1 145 chr2R 21043648 intergenic not near genes chr2R 21043720 intergenic not near genes chr2R 21043793 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-440 781 chr2R 21048460 21048478 chr2R 21048593 21048621 5 135 1.5 6.0 3.8 1.0 161 chr2R 21048460 intergenic not near genes chr2R 21048540 intergenic not near genes chr2R 21048621 intergenic not near genes chr2R_5_21045001 chr2R_21045001 RAL-440 782 chr2R 21141117 21141151 chr2R 21141224 21141267 12 106 0.5 3.0 1.8 4.3 150 chr2R 21141117 intron Magi - chr2R 21141192 intron Magi - chr2R 21141267 intron Magi - chr2R_12_21140001 chr2R_21140001 RAL-440 783 chr2R 21151104 21151128 chr2R 21153755 21153780 opus 5 2647 8.0 7.0 7.5 0.6 2676 chr2R 21151104 intron CG30389 - chr2R 21152442 intron CG30389 - chr2R 21153780 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-440 784 chr2R 21151131 21151145 chr2R 21153749 21153794 opus 4 2638 5.5 6.0 5.8 0.6 2663 chr2R 21151131 intron CG30389 - chr2R 21152462 intron CG30389 - chr2R 21153794 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-440 785 chr2R 21188202 21188250 chr2R 21188297 21188337 6 94 4.5 5.5 5.0 1.0 135 chr2R 21188202 exon tud + chr2R 21188270 intron tud + chr2R 21188337 intron tud + chr2R_6_21185001 chr2R_21185001 RAL-440 786 chr2R 21199994 21200037 chr2R 21200095 21200139 9 96 1.5 4.0 2.8 2.4 145 chr2R 21199994 intergenic CG44245 +,Glycogenin + chr2R 21200066 intergenic CG44245 +,Glycogenin + chr2R 21200139 intergenic CG44245 +,Glycogenin + chr2R_9_21200001 chr2R_21200001 RAL-440 787 chr2R 21363118 21363144 chr2R 21363235 21363246 4 109 0.5 1.0 0.8 2.2 128 chr2R 21363118 intron cv-2 - chr2R 21363182 intron cv-2 - chr2R 21363246 intron cv-2 - chr2R_4_21360001 chr2R_21360001 RAL-440 788 chr2R 21380197 21380209 chr2R 21380349 21380388 5 171 1.5 2.0 1.8 1.8 191 chr2R 21380197 intergenic not near genes chr2R 21380292 intergenic not near genes chr2R 21380388 intergenic not near genes chr2R_5_21380001 chr2R_21380001 RAL-440 789 chr2R 21417263 21417282 chr2R 21417378 21417384 5 108 7.0 0.0 3.5 1.1 121 chr2R 21417263 intron Sdc - chr2R 21417324 intron Sdc - chr2R 21417384 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-440 790 chr2R 21421332 21421351 chr2R 21421421 21421434 6 86 5.5 5.0 5.2 1.0 102 chr2R 21421332 intron Sdc - chr2R 21421383 intron Sdc - chr2R 21421434 intron Sdc - chr2R_6_21420001 chr2R_21420001 RAL-440 791 chr2R 21612342 21612377 chr2R 21612450 21612467 17 101 8.0 1.0 4.5 3.1 125 chr2R 21612342 intron CG15673 - chr2R 21612404 intron CG15673 - chr2R 21612467 intron CG15673 - chr2R_17_21610001 chr2R_21610001 RAL-440 792 chr2R 21708163 21708211 chr2R 21709946 21709994 8 1791 14.0 7.0 10.5 0.7 1831 chr2R 21708163 intron HmgD + chr2R 21709078 intron,3` UTR HmgD +,CR44749 - chr2R 21709994 intron,3` UTR HmgD +,CG30403 - chr2R_8_21705001 chr2R_21705001 RAL-440 793 chr2R 21753062 21753112 chr2R 21753567 21753582 roo 11 496 3.5 2.5 3.0 2.8 520 chr2R 21753062 intergenic not near genes chr2R 21753322 intergenic not near genes chr2R 21753582 intergenic not near genes chr2R_11_21750001 chr2R_21750001 RAL-440 794 chr2R 21796449 21796479 chr2R 21796539 21796582 7 93 5.5 3.5 4.5 1.3 133 chr2R 21796449 5` UTR CG34204 + chr2R 21796516 5` UTR CG34204 + chr2R 21796582 exon CG34204 + chr2R_7_21795001 chr2R_21795001 RAL-440 795 chr2R 21818863 21818902 chr2R 21818969 21818995 9 98 8.5 1.0 4.8 1.6 132 chr2R 21818863 intergenic not near genes chr2R 21818929 intergenic not near genes chr2R 21818995 intergenic not near genes chr2R_9_21815001 chr2R_21815001 RAL-440 796 chr2R 21906267 21906290 chr2R 21906388 21906409 4 117 5.0 5.0 5.0 0.7 142 chr2R 21906267 intron Fili + chr2R 21906338 intron Fili + chr2R 21906409 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-440 797 chr2R 21919885 21919904 chr2R 21919967 21919985 8 95 2.0 5.0 3.5 1.8 100 chr2R 21919885 intron Fili + chr2R 21919935 intron Fili + chr2R 21919985 intron Fili + chr2R_8_21915001 chr2R_21915001 RAL-440 798 chr2R 21932250 21932277 chr2R 21932324 21932363 6 78 3.5 6.0 4.8 1.0 113 chr2R 21932250 intron Fili + chr2R 21932306 intron Fili + chr2R 21932363 intron Fili + chr2R_6_21930001 chr2R_21930001 RAL-440 799 chr2R 21992407 21992425 chr2R 21992504 21992515 5 95 1.5 7.0 4.2 1.0 108 chr2R 21992407 intron CG34370 - chr2R 21992461 intron CG34370 - chr2R 21992515 intron CG34370 - chr2R_5_21990001 chr2R_21990001 RAL-440 800 chr2R 22009761 22009807 chr2R 22009850 22009902 14 88 3.0 4.5 3.8 2.9 141 chr2R 22009761 intron CG34370 - chr2R 22009832 intron CG34370 - chr2R 22009902 intron CG34370 - chr2R_14_22005001 chr2R_22005001 RAL-440 801 chr2R 22012982 22013011 chr2R 22013096 22013107 4 106 2.5 4.0 3.2 1.0 125 chr2R 22012982 intron CG34370 - chr2R 22013044 intron CG34370 - chr2R 22013107 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-440 802 chr2R 22037765 22037804 chr2R 22037867 22037877 6 91 1.0 0.5 0.8 3.3 112 chr2R 22037765 intron CG34370 - chr2R 22037821 intron CG34370 - chr2R 22037877 intron CG34370 - chr2R_6_22035001 chr2R_22035001 RAL-440 803 chr2R 22072685 22072713 chr2R 22072783 22072810 11 96 7.5 5.0 6.2 1.5 125 chr2R 22072685 intron CG11474 - chr2R 22072748 intron CG11474 - chr2R 22072810 exon CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-440 804 chr2R 22118411 22118451 chr2R 22118499 22118530 21 92 1.5 3.0 2.2 6.6 119 chr2R 22118411 intron Vrp1 - chr2R 22118470 intron Vrp1 - chr2R 22118530 intron Vrp1 - chr2R_21_22115001 chr2R_22115001 RAL-440 805 chr2R 22124294 22124338 chr2R 22124399 22124438 8 101 1.5 3.5 2.5 2.3 144 chr2R 22124294 3` UTR mei-S332 + chr2R 22124366 3` UTR mei-S332 + chr2R 22124438 intergenic mei-S332 +,GM130 - chr2R_8_22120001 chr2R_22120001 RAL-440 806 chr2R 22185683 22185700 chr2R 22185783 22185805 6 111 0.5 1.5 1.0 3.0 122 chr2R 22185683 3` UTR MED16 + chr2R 22185744 3` UTR MED16 + chr2R 22185805 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-440 807 chr2R 22189442 22189473 chr2R 22189572 22189620 6 140 4.5 2.0 3.2 1.4 178 chr2R 22189442 3` UTR Vps35 + chr2R 22189531 3` UTR Vps35 + chr2R 22189620 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-440 808 chr2R 22290060 22290096 chr2R 22290164 22290182 5 96 1.5 4.0 2.8 1.3 122 chr2R 22290060 intergenic not near genes chr2R 22290121 intergenic not near genes chr2R 22290182 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-440 809 chr2R 22349689 22349699 chr2R 22351476 22351486 jockey 4 1790 7.0 3.5 5.2 0.6 1797 chr2R 22349689 intron Liprin-gamma - chr2R 22350588 intron Liprin-gamma - chr2R 22351486 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-440 810 chr2R 22349701 22349716 chr2R 22351473 22351515 jockey 4 1786 5.5 3.0 4.2 0.8 1814 chr2R 22349701 intron Liprin-gamma - chr2R 22350608 intron Liprin-gamma - chr2R 22351515 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-440 811 chr2R 22525735 22525781 chr2R 22529305 22529351 jockey 11 3570 4.5 4.5 4.5 2.0 3616 chr2R 22525735 intron px - chr2R 22527543 intron px - chr2R 22529351 intron px - chr2R_11_22525001 chr2R_22525001 RAL-440 812 chr2R 22623447 22623481 chr2R 22623592 22623629 6 140 7.0 5.5 6.2 0.8 182 chr2R 22623447 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623629 intron CG33143 + chr2R_6_22620001 chr2R_22620001 RAL-440 813 chr2R 22643919 22643935 chr2R 22644006 22644014 4 86 7.0 6.5 6.8 0.5 95 chr2R 22643919 intergenic Ugt58Fa - chr2R 22643966 intergenic Ugt58Fa - chr2R 22644014 intergenic Ugt58Fa - chr2R_4_22640001 chr2R_22640001 RAL-440 814 chr2R 22643937 22643955 chr2R 22644005 22644047 14 88 4.5 6.0 5.2 2.3 110 chr2R 22643937 intergenic Ugt58Fa - chr2R 22643992 intergenic Ugt58Fa - chr2R 22644047 intergenic Ugt58Fa - chr2R_14_22640001 chr2R_22640001 RAL-440 815 chr2R 22723222 22723265 chr2R 22723310 22723356 7 87 1.5 4.5 3.0 1.8 134 chr2R 22723222 intron jbug - chr2R 22723289 intron jbug - chr2R 22723356 intron jbug - chr2R_7_22720001 chr2R_22720001 RAL-440 816 chr2R 22774210 22774226 chr2R 22774507 22774534 5 310 1.0 2.5 1.8 1.8 324 chr2R 22774210 intron CG42260 - chr2R 22774372 intron CG42260 - chr2R 22774534 intron CG42260 - chr2R_5_22770001 chr2R_22770001 RAL-440 817 chr2R 22774948 22774957 chr2R 22775387 22775395 jockey 4 436 10.0 4.5 7.2 0.5 447 chr2R 22774948 intron CG42260 - chr2R 22775172 intron CG42260 - chr2R 22775395 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-440 818 chr2R 22774968 22775002 chr2R 22775382 22775421 jockey 7 419 2.0 4.5 3.2 1.7 453 chr2R 22774968 intron CG42260 - chr2R 22775194 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_7_22775001 chr2R_22775001 RAL-440 819 chr2R 22839473 22839499 chr2R 22839572 22839592 5 95 4.5 1.0 2.8 1.3 119 chr2R 22839473 intergenic CG9825 + chr2R 22839532 intergenic CG9825 + chr2R 22839592 intergenic CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-440 820 chr2R 22903632 22903677 chr2R 22903880 22903920 10 235 1.0 3.5 2.2 3.1 288 chr2R 22903632 intron nahoda + chr2R 22903776 intron nahoda + chr2R 22903920 intron nahoda + chr2R_10_22900001 chr2R_22900001 RAL-440 821 chr2R 22906378 22906411 chr2R 22906579 22906589 7 201 3.0 2.0 2.5 2.0 211 chr2R 22906378 intron nahoda + chr2R 22906484 intron nahoda + chr2R 22906589 intron nahoda + chr2R_7_22905001 chr2R_22905001 RAL-440 822 chr2R 22941809 22941848 chr2R 22941902 22941942 11 94 4.0 1.5 2.8 2.9 133 chr2R 22941809 intergenic CG42694 + chr2R 22941876 5` UTR CG42694 + chr2R 22941942 5` UTR CG42694 + chr2R_11_22940001 chr2R_22940001 RAL-440 823 chr2R 22964208 22964230 chr2R 22964323 22964328 4 107 4.0 1.5 2.8 1.1 120 chr2R 22964208 intergenic not near genes chr2R 22964268 intergenic not near genes chr2R 22964328 intergenic not near genes chr2R_4_22960001 chr2R_22960001 RAL-440 824 chr2R 22993413 22993448 chr2R 22993607 22993635 6 181 2.5 4.5 3.5 1.3 222 chr2R 22993413 intron twi + chr2R 22993524 intron twi + chr2R 22993635 intron twi + chr2R_6_22990001 chr2R_22990001 RAL-440 825 chr2R 23045322 23045358 chr2R 23045556 23045589 9 228 5.0 5.5 5.2 1.5 267 chr2R 23045322 intron twi + chr2R 23045456 intron twi + chr2R 23045589 intron twi + chr2R_9_23045001 chr2R_23045001 RAL-440 826 chr2R 23052630 23052664 chr2R 23052726 23052726 6 88 5.5 5.5 5.5 0.9 96 chr2R 23052630 intergenic not near genes chr2R 23052678 intergenic not near genes chr2R 23052726 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-440 827 chr2R 23219006 23219019 chr2R 23219258 23219271 6 250 6.0 0.0 3.0 1.5 265 chr2R 23219006 intergenic not near genes chr2R 23219138 intergenic not near genes chr2R 23219271 intergenic not near genes chr2R_6_23215001 chr2R_23215001 RAL-440 828 chr2R 23402613 23402637 chr2R 23407683 23407732 flea 7 5079 5.0 5.5 5.2 1.1 5119 chr2R 23402613 intergenic CG3520 - chr2R 23405172 intergenic not near genes chr2R 23407732 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-440 829 chr2R 23437210 23437239 chr2R 23437307 23437317 4 83 2.0 1.5 1.8 1.4 107 chr2R 23437210 intergenic not near genes chr2R 23437264 intergenic not near genes chr2R 23437317 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-440 830 chr2R 23518174 23518209 chr2R 23518272 23518286 4 87 2.0 3.0 2.5 1.1 112 chr2R 23518174 intergenic not near genes chr2R 23518230 intergenic not near genes chr2R 23518286 intergenic not near genes chr2R_4_23515001 chr2R_23515001 RAL-440 831 chr2R 23607022 23607032 chr2R 23607119 23607133 5 99 7.0 2.5 4.8 0.9 111 chr2R 23607022 intron CG17664 - chr2R 23607078 intron CG17664 - chr2R 23607133 intron CG17664 - chr2R_5_23605001 chr2R_23605001 RAL-440 832 chr2R 23607033 23607193 chr2R 23607118 23607298 22 101 2.0 2.5 2.2 6.9 265 chr2R 23607033 intron CG17664 - chr2R 23607166 intron CG17664 - chr2R 23607298 intron CG17664 - chr2R_22_23605001 chr2R_23605001 RAL-440 833 chr2R 23726226 23726255 chr2R 23726314 23726349 8 93 3.5 2.0 2.8 2.1 123 chr2R 23726226 intron Sesn + chr2R 23726288 intron Sesn + chr2R 23726349 intron Sesn + chr2R_8_23725001 chr2R_23725001 RAL-440 834 chr2R 23784452 23784506 chr2R 23784550 23784588 12 85 4.0 4.5 4.2 2.3 136 chr2R 23784452 intron CG9850 - chr2R 23784520 intron CG9850 - chr2R 23784588 intron CG9850 - chr2R_12_23780001 chr2R_23780001 RAL-440 835 chr2R 23819121 23819141 chr2R 23819236 23819256 5 113 5.5 2.5 4.0 1.0 135 chr2R 23819121 intergenic not near genes chr2R 23819188 intergenic not near genes chr2R 23819256 intergenic not near genes chr2R_5_23815001 chr2R_23815001 RAL-440 836 chr2R 23914291 23914332 chr2R 23921921 23921929 412 16 7622 2.5 3.5 3.0 4.0 7638 chr2R 23914291 exon kcc + chr2R 23918110 intron kcc + chr2R 23921929 intron kcc + chr2R_16_23915001 chr2R_23915001 RAL-440 837 chr2R 23986497 23986544 chr2R 23986593 23986644 13 91 1.5 5.0 3.2 3.1 147 chr2R 23986497 intron Phm - chr2R 23986570 intron Phm - chr2R 23986644 intron,5` UTR Phm -,CG30178 + chr2R_13_23985001 chr2R_23985001 RAL-440 838 chr2R 24031366 24031412 chr2R 24031466 24031500 16 96 5.0 5.0 5.0 2.7 134 chr2R 24031366 5` UTR CG30172 - chr2R 24031433 intergenic CG30172 -,Chi - chr2R 24031500 intergenic Chi -,CG30172 - chr2R_16_24030001 chr2R_24030001 RAL-440 839 chr2R 24147072 24147094 chr2R 24154653 24154667 412 4 7580 3.0 6.0 4.5 0.7 7595 chr2R 24147072 intron Dat + chr2R 24150870 intron Dat + chr2R 24154667 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-440 840 chr2R 24177215 24177268 chr2R 24184720 24184753 412 21 7497 5.5 3.5 4.5 3.8 7538 chr2R 24177215 3` UTR Nop60B + chr2R 24180984 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_21_24180001 chr2R_24180001 RAL-440 841 chr2R 24353421 24353441 chr2R 24361803 24361805 roo 4 8374 5.0 4.0 4.5 0.7 8384 chr2R 24353421 intron,intron bs +,CR44811 - chr2R 24357613 intron,intron bs +,CR44811 - chr2R 24361805 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-440 842 chr2R 24353442 24353460 chr2R 24361799 24361824 roo 4 8366 2.5 4.0 3.2 1.0 8382 chr2R 24353442 intron,intron bs +,CR44811 - chr2R 24357633 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-440 843 chr2R 24509313 24509338 chr2R 24509395 24509426 16 92 5.0 2.5 3.8 3.3 113 chr2R 24509313 intergenic Letm1 - chr2R 24509370 intergenic Letm1 - chr2R 24509426 intergenic Letm1 - chr2R_16_24505001 chr2R_24505001 RAL-440 844 chr2R 24591500 24591544 chr2R 24591592 24591635 16 91 3.0 2.0 2.5 4.6 135 chr2R 24591500 intron pio + chr2R 24591568 intron pio + chr2R 24591635 intron pio + chr2R_16_24590001 chr2R_24590001 RAL-440 845 chr2R 24633984 24634025 chr2R 24634074 24634090 13 79 2.5 3.0 2.8 3.4 106 chr2R 24633984 intron CG13594 - chr2R 24634037 intron CG13594 - chr2R 24634090 intron CG13594 - chr2R_13_24630001 chr2R_24630001 RAL-440 846 chr2R 24636902 24636923 chr2R 24637008 24637012 5 100 3.5 0.5 2.0 1.7 110 chr2R 24636902 intron CG13594 - chr2R 24636957 intron CG13594 - chr2R 24637012 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-440 847 chr2R 24660375 24660390 chr2R 24660686 24660746 4 352 4.0 0.0 2.0 1.3 371 chr2R 24660375 intergenic not near genes chr2R 24660560 intergenic not near genes chr2R 24660746 intergenic not near genes chr2R_4_24660001 chr2R_24660001 RAL-440 848 chr2R 24687639 24687671 chr2R 24687722 24687761 7 88 5.0 6.0 5.5 1.1 122 chr2R 24687639 intergenic Mmp1 - chr2R 24687700 intergenic Mmp1 - chr2R 24687761 intergenic Mmp1 - chr2R_7_24685001 chr2R_24685001 RAL-440 849 chr2R 24727889 24727918 chr2R 24735397 24735436 mdg1 6 7508 1.0 6.5 3.8 1.2 7547 chr2R 24727889 intron Mid1 - chr2R 24731662 intron Mid1 - chr2R 24735436 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-440 850 chr2R 24742103 24742145 chr2R 24742206 24742236 7 98 2.0 5.0 3.5 1.6 133 chr2R 24742103 intergenic not near genes chr2R 24742170 intergenic not near genes chr2R 24742236 intergenic not near genes chr2R_7_24740001 chr2R_24740001 RAL-440 851 chr2R 24859836 24859868 chr2R 24859928 24859937 8 83 0.0 3.0 1.5 3.2 101 chr2R 24859836 5` UTR CR44829 + chr2R 24859886 5` UTR CR44829 + chr2R 24859937 5` UTR CR44829 + chr2R_8_24855001 chr2R_24855001 RAL-440 852 chr2R 24884042 24884076 chr2R 24884137 24884175 9 95 3.0 1.5 2.2 2.8 133 chr2R 24884042 intron NKAIN + chr2R 24884108 intron NKAIN + chr2R 24884175 intron NKAIN + chr2R_9_24880001 chr2R_24880001 RAL-440 853 chr2R 25014550 25014576 chr2R 25014626 25014659 11 79 2.0 8.0 5.0 1.8 109 chr2R 25014550 intron uzip + chr2R 25014604 intron uzip + chr2R 25014659 intron uzip + chr2R_11_25010001 chr2R_25010001 RAL-440 854 chr2R 25018335 25018374 chr2R 25018439 25018495 16 107 3.5 6.0 4.8 2.8 160 chr2R 25018335 intron uzip + chr2R 25018415 intron uzip + chr2R 25018495 intron uzip + chr2R_16_25015001 chr2R_25015001 RAL-440 855 chr2R 25022635 25022667 chr2R 25022728 25022771 9 97 3.5 3.0 3.2 2.1 136 chr2R 25022635 intron uzip + chr2R 25022703 intron uzip + chr2R 25022771 intron uzip + chr2R_9_25020001 chr2R_25020001 RAL-440 856 chr2R 25061330 25061365 chr2R 25061422 25061452 5 95 5.5 3.5 4.5 0.9 122 chr2R 25061330 intergenic not near genes chr2R 25061391 intergenic not near genes chr2R 25061452 intergenic not near genes chr2R_5_25060001 chr2R_25060001 RAL-440 857 chr2R 25081620 25081637 chr2R 25082705 25082746 4 1098 3.0 3.0 3.0 1.0 1126 chr2R 25081620 intron gol - chr2R 25082183 intron gol - chr2R 25082746 intron gol - chr2R_4_25080001 chr2R_25080001 RAL-440 858 chr2R 25101259 25101309 chr2R 25101376 25101415 19 110 3.5 3.0 3.2 4.5 156 chr2R 25101259 intron lov - chr2R 25101337 intron lov - chr2R 25101415 intron lov - chr2R_19_25100001 chr2R_25100001 RAL-440 859 chr2R 25141643 25141683 chr2R 25159338 25159385 roo 12 17702 3.0 6.5 4.8 2.1 17742 chr2R 25141643 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159385 intergenic not near genes chr2R_12_25150001 chr2R_25150001 RAL-440 860 chr2R 25167686 25167696 chr2R 25167779 25167792 5 93 4.0 3.0 3.5 1.1 106 chr2R 25167686 5` UTR CG34038 + chr2R 25167739 5` UTR CG34038 + chr2R 25167792 5` UTR CG34038 + chr2R_5_25165001 chr2R_25165001 RAL-440 861 chr3L 68976 69016 chr3L 69074 69096 11 94 2.5 4.5 3.5 2.4 120 chr3L 68976 3` UTR Lsp1gamma + chr3L 69036 intergenic Lsp1gamma +,CR44510 + chr3L 69096 intergenic CR44510 +,Lsp1gamma + chr3L_11_65001 chr3L_65001 RAL-440 862 chr3L 93788 93814 chr3L 93879 93893 4 84 5.5 9.5 7.5 0.5 105 chr3L 93788 intergenic not near genes chr3L 93840 intergenic not near genes chr3L 93893 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-440 863 chr3L 110206 110211 chr3L 119388 119398 roo 4 9186 6.0 7.5 6.8 0.5 9192 chr3L 110206 intergenic not near genes chr3L 114802 intergenic not near genes chr3L 119398 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-440 864 chr3L 110214 110237 chr3L 119381 119416 roo 11 9176 5.5 6.0 5.8 1.6 9202 chr3L 110214 intergenic not near genes chr3L 114815 intergenic not near genes chr3L 119416 intergenic not near genes chr3L_11_110001 chr3L_110001 RAL-440 865 chr3L 402705 402718 chr3L 409746 409788 297 6 7061 3.0 7.0 5.0 1.0 7083 chr3L 402705 intergenic not near genes chr3L 406246 intergenic not near genes chr3L 409788 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-440 866 chr3L 507040 507076 chr3L 507133 507169 9 96 2.5 0.5 1.5 3.6 129 chr3L 507040 intron klar - chr3L 507104 intron klar - chr3L 507169 intron klar - chr3L_9_505001 chr3L_505001 RAL-440 867 chr3L 514266 514304 chr3L 514355 514383 10 85 3.5 6.5 5.0 1.7 117 chr3L 514266 intron klar - chr3L 514324 intron klar - chr3L 514383 intron klar - chr3L_10_510001 chr3L_510001 RAL-440 868 chr3L 606877 606922 chr3L 606973 607020 4 93 0.0 0.0 0.0 4.0 143 chr3L 606877 intergenic Reg-2 - chr3L 606948 intergenic Reg-2 - chr3L 607020 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-440 869 chr3L 642462 642500 chr3L 642573 642605 4 110 1.0 7.0 4.0 0.8 143 chr3L 642462 5` UTR CR43334 + chr3L 642534 5` UTR CR43334 + chr3L 642605 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-440 870 chr3L 705884 705932 chr3L 705999 706034 10 111 3.5 3.0 3.2 2.4 150 chr3L 705884 intergenic CG13895 -,CR44514 + chr3L 705959 3` UTR CG13895 - chr3L 706034 3` UTR CG13895 - chr3L_10_705001 chr3L_705001 RAL-440 871 chr3L 732756 732785 chr3L 733178 733205 10 427 0.0 3.0 1.5 4.0 449 chr3L 732756 intergenic not near genes chr3L 732980 intergenic not near genes chr3L 733205 intergenic not near genes chr3L_10_730001 chr3L_730001 RAL-440 872 chr3L 789917 789946 chr3L 790411 790449 roo 7 493 1.0 5.0 3.0 1.8 532 chr3L 789917 intergenic not near genes chr3L 790183 intergenic not near genes chr3L 790449 intergenic not near genes chr3L_7_790001 chr3L_790001 RAL-440 873 chr3L 858002 858022 chr3L 866482 866485 Tirant 5 8477 4.0 3.5 3.8 1.0 8483 chr3L 858002 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866485 intergenic CG12502 + chr3L_5_860001 chr3L_860001 RAL-440 874 chr3L 925173 925202 chr3L 932613 932648 mdg1 10 7438 4.5 5.0 4.8 1.7 7475 chr3L 925173 intron Glut1 + chr3L 928910 intron Glut1 + chr3L 932648 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-440 875 chr3L 933905 933940 chr3L 934013 934060 11 116 3.5 2.5 3.0 2.8 155 chr3L 933905 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934060 intron Glut1 + chr3L_11_930001 chr3L_930001 RAL-440 876 chr3L 939769 939798 chr3L 940892 940915 jockey 8 1125 7.5 6.0 6.8 1.0 1146 chr3L 939769 intron Glut1 + chr3L 940342 intron Glut1 + chr3L 940915 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-440 877 chr3L 1008503 1008531 chr3L 1008581 1008620 4 85 3.0 2.5 2.8 1.1 117 chr3L 1008503 intron trio - chr3L 1008562 intron trio - chr3L 1008620 intron trio - chr3L_4_1005001 chr3L_1005001 RAL-440 878 chr3L 1009071 1009085 chr3L 1009169 1009183 5 102 0.0 6.5 3.2 1.2 112 chr3L 1009071 intron trio - chr3L 1009127 intron trio - chr3L 1009183 intron trio - chr3L_5_1005001 chr3L_1005001 RAL-440 879 chr3L 1021364 1021407 chr3L 1021458 1021491 10 90 4.5 7.5 6.0 1.4 127 chr3L 1021364 intron trio - chr3L 1021428 intron trio - chr3L 1021491 intron trio - chr3L_10_1020001 chr3L_1020001 RAL-440 880 chr3L 1040558 1040580 chr3L 1040648 1040668 4 91 3.5 4.0 3.8 0.8 110 chr3L 1040558 intron bab1 - chr3L 1040613 intron bab1 - chr3L 1040668 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-440 881 chr3L 1042951 1042985 chr3L 1043041 1043069 4 86 4.0 4.5 4.2 0.8 118 chr3L 1042951 intron bab1 - chr3L 1043010 intron bab1 - chr3L 1043069 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-440 882 chr3L 1095024 1095049 chr3L 1095099 1095099 4 64 2.5 2.5 2.5 1.1 75 chr3L 1095024 intron bab1 - chr3L 1095062 intron bab1 - chr3L 1095099 intron bab1 - chr3L_4_1095001 chr3L_1095001 RAL-440 883 chr3L 1115797 1115821 chr3L 1116000 1116028 4 206 1.0 6.5 3.8 0.8 231 chr3L 1115797 intergenic not near genes chr3L 1115912 intergenic not near genes chr3L 1116028 intergenic not near genes chr3L_4_1115001 chr3L_1115001 RAL-440 884 chr3L 1127618 1127664 chr3L 1127798 1127810 7 169 2.5 1.5 2.0 2.3 192 chr3L 1127618 intergenic not near genes chr3L 1127714 intergenic not near genes chr3L 1127810 intergenic not near genes chr3L_7_1125001 chr3L_1125001 RAL-440 885 chr3L 1154115 1154122 chr3L 1163284 1163284 roo 4 9167 9.0 3.0 6.0 0.6 9169 chr3L 1154115 intron bab2 - chr3L 1158700 intron bab2 - chr3L 1163284 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-440 886 chr3L 1154129 1154163 chr3L 1163278 1163320 roo 14 9160 4.0 3.0 3.5 3.1 9191 chr3L 1154129 intron bab2 - chr3L 1158724 intron bab2 - chr3L 1163320 intron bab2 - chr3L_14_1155001 chr3L_1155001 RAL-440 887 chr3L 1195349 1195401 chr3L 1195573 1195613 5 210 0.5 0.0 0.2 4.2 264 chr3L 1195349 intergenic LysX - chr3L 1195481 intergenic LysX - chr3L 1195613 intergenic LysX - chr3L_5_1195001 chr3L_1195001 RAL-440 888 chr3L 1219604 1219625 chr3L 1227328 1227349 412 6 7735 1.0 4.0 2.5 1.7 7745 chr3L 1219604 intron mwh + chr3L 1223476 intron mwh + chr3L 1227349 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-440 889 chr3L 1310983 1311007 chr3L 1315836 1315863 5 4855 20.5 30.5 25.5 0.2 4880 chr3L 1310983 exon CG2469 + chr3L 1313423 intergenic CG9186 -,CG9153 + chr3L 1315863 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-440 890 chr3L 1324612 1324654 chr3L 1324704 1324751 8 92 5.0 1.0 3.0 2.0 139 chr3L 1324612 intron Myo61F + chr3L 1324682 intron Myo61F + chr3L 1324751 intron Myo61F + chr3L_8_1320001 chr3L_1320001 RAL-440 891 chr3L 1338327 1338353 chr3L 1341887 1341906 4 3561 23.0 22.0 22.5 0.2 3579 chr3L 1338327 exon l(3)02640 + chr3L 1340116 exon CG2199 - chr3L 1341906 intron CG2199 - chr3L_4_1340001 chr3L_1340001 RAL-440 892 chr3L 1396729 1396752 chr3L 1396822 1396838 5 90 23.0 24.5 23.8 0.2 109 chr3L 1396729 intron Ptp61F - chr3L 1396784 intron Ptp61F - chr3L 1396838 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-440 893 chr3L 1440501 1440721 chr3L 1440588 1440773 16 83 0.0 0.5 0.2 13.3 272 chr3L 1440501 intron Ptp61F - chr3L 1440637 intron Ptp61F - chr3L 1440773 intron Ptp61F - chr3L_16_1440001 chr3L_1440001 RAL-440 894 chr3L 1480987 1481022 chr3L 1481077 1481102 6 84 5.5 2.5 4.0 1.2 115 chr3L 1480987 intron stet - chr3L 1481044 intron stet - chr3L 1481102 intron stet - chr3L_6_1480001 chr3L_1480001 RAL-440 895 chr3L 1514781 1514788 chr3L 1514880 1514892 4 102 3.5 0.0 1.8 1.4 111 chr3L 1514781 intron,intron Psa +,cue - chr3L 1514836 intron,intron Psa +,cue - chr3L 1514892 intron,intron Psa +,cue - chr3L_4_1510001 chr3L_1510001 RAL-440 896 chr3L 1706791 1706821 chr3L 1707284 1707301 10 487 1.5 1.0 1.2 4.5 510 chr3L 1706791 intron CG7991 + chr3L 1707046 intron CG7991 + chr3L 1707301 intron CG7991 + chr3L_10_1705001 chr3L_1705001 RAL-440 897 chr3L 1740838 1740874 chr3L 1741102 1741123 pogo 8 255 5.0 3.5 4.2 1.5 285 chr3L 1740838 intron Gk + chr3L 1740980 intron Gk + chr3L 1741123 intron Gk + chr3L_8_1740001 chr3L_1740001 RAL-440 898 chr3L 1830287 1830322 chr3L 1830378 1830383 10 94 4.5 1.5 3.0 2.5 96 chr3L 1830287 intron Cpr62Ba - chr3L 1830335 intron Cpr62Ba - chr3L 1830383 intron Cpr62Ba - chr3L_10_1830001 chr3L_1830001 RAL-440 899 chr3L 1905332 1905375 chr3L 1905446 1905485 6 107 2.5 7.0 4.8 1.0 153 chr3L 1905332 intron CG1887 - chr3L 1905408 intron CG1887 - chr3L 1905485 intron CG1887 - chr3L_6_1905001 chr3L_1905001 RAL-440 900 chr3L 1988860 1988875 chr3L 1989019 1989058 7 179 1.0 1.5 1.2 3.2 198 chr3L 1988860 intergenic not near genes chr3L 1988959 intergenic not near genes chr3L 1989058 intergenic not near genes chr3L_7_1985001 chr3L_1985001 RAL-440 901 chr3L 2108237 2108250 chr3L 2113459 2113468 copia 4 5219 1.0 1.5 1.2 1.8 5231 chr3L 2108237 intron sls - chr3L 2110852 intron sls - chr3L 2113468 intron sls - chr3L_4_2110001 chr3L_2110001 RAL-440 902 chr3L 2139198 2139226 chr3L 2139286 2139316 6 90 7.5 4.5 6.0 0.9 118 chr3L 2139198 intron zormin - chr3L 2139257 intron zormin - chr3L 2139316 intron zormin - chr3L_6_2135001 chr3L_2135001 RAL-440 903 chr3L 2168762 2168796 chr3L 2168861 2168892 14 102 5.0 1.5 3.2 3.3 130 chr3L 2168762 exon CG15879 - chr3L 2168827 intron CG15879 - chr3L 2168892 intron CG15879 - chr3L_14_2165001 chr3L_2165001 RAL-440 904 chr3L 2307994 2308015 chr3L 2308112 2308115 5 112 10.0 3.5 6.8 0.6 121 chr3L 2307994 intergenic not near genes chr3L 2308054 intergenic not near genes chr3L 2308115 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-440 905 chr3L 2355431 2355460 chr3L 2355634 2355666 5 196 1.0 1.0 1.0 2.5 235 chr3L 2355431 intergenic not near genes chr3L 2355548 intergenic not near genes chr3L 2355666 intergenic not near genes chr3L_5_2355001 chr3L_2355001 RAL-440 906 chr3L 2400902 2400939 chr3L 2401280 2401310 10 376 3.5 5.5 4.5 1.8 408 chr3L 2400902 intron CG45186 + chr3L 2401106 intron CG45186 + chr3L 2401310 intron CG45186 + chr3L_10_2400001 chr3L_2400001 RAL-440 907 chr3L 2447487 2447505 chr3L 2456663 2456670 roo 5 9170 10.5 3.0 6.8 0.6 9183 chr3L 2447487 intron CG45186 + chr3L 2452078 intron CG45186 + chr3L 2456670 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-440 908 chr3L 2447507 2447536 chr3L 2456662 2456692 roo 7 9159 3.5 3.0 3.2 1.7 9185 chr3L 2447507 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-440 909 chr3L 2478878 2479027 chr3L 2478964 2479123 11 101 2.5 3.0 2.8 2.9 245 chr3L 2478878 intron CG45186 + chr3L 2479000 intron CG45186 + chr3L 2479123 intron CG45186 + chr3L_11_2475001 chr3L_2475001 RAL-440 910 chr3L 2493817 2493850 chr3L 2493901 2493947 9 98 1.0 0.0 0.5 6.0 130 chr3L 2493817 intron CG45186 + chr3L 2493882 intron CG45186 + chr3L 2493947 intron CG45186 + chr3L_9_2490001 chr3L_2490001 RAL-440 911 chr3L 2514395 2514439 chr3L 2514662 2514693 13 267 7.0 4.5 5.8 1.9 298 chr3L 2514395 intron Spn - chr3L 2514544 intron Spn - chr3L 2514693 intron Spn - chr3L_13_2510001 chr3L_2510001 RAL-440 912 chr3L 2517783 2517807 chr3L 2517913 2517957 6 141 3.5 7.0 5.2 1.0 174 chr3L 2517783 intron,5` UTR Spn -,CR45170 + chr3L 2517870 intron,5` UTR Spn -,CR45170 + chr3L 2517957 intron,5` UTR Spn -,CR45170 + chr3L_6_2515001 chr3L_2515001 RAL-440 913 chr3L 2533649 2533679 chr3L 2533738 2533759 4 86 3.0 6.5 4.8 0.7 110 chr3L 2533649 intron Spn - chr3L 2533704 intron Spn - chr3L 2533759 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-440 914 chr3L 2626395 2626439 chr3L 2626539 2626566 5 136 2.5 4.5 3.5 1.1 171 chr3L 2626395 intron Pxn - chr3L 2626480 intron Pxn - chr3L 2626566 intron Pxn - chr3L_5_2625001 chr3L_2625001 RAL-440 915 chr3L 2674753 2674808 chr3L 2674854 2674908 16 94 2.0 5.0 3.5 3.6 155 chr3L 2674753 intron Fife - chr3L 2674830 intron Fife - chr3L 2674908 intron Fife - chr3L_16_2670001 chr3L_2670001 RAL-440 916 chr3L 2675621 2675657 chr3L 2676124 2676158 6 496 2.5 5.5 4.0 1.2 537 chr3L 2675621 intron Fife - chr3L 2675890 intron Fife - chr3L 2676158 intron Fife - chr3L_6_2675001 chr3L_2675001 RAL-440 917 chr3L 2683936 2683966 chr3L 2684025 2684058 6 88 5.0 1.5 3.2 1.4 122 chr3L 2683936 intron Fife - chr3L 2683997 intron Fife - chr3L 2684058 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-440 918 chr3L 2706188 2706221 chr3L 2706347 2706370 13 150 4.0 2.5 3.2 3.1 182 chr3L 2706188 intron Fife - chr3L 2706279 intron Fife - chr3L 2706370 intron Fife - chr3L_13_2705001 chr3L_2705001 RAL-440 919 chr3L 2719530 2719556 chr3L 2719638 2719655 4 110 2.0 4.0 3.0 1.0 125 chr3L 2719530 3` UTR Mrtf - chr3L 2719592 3` UTR Mrtf - chr3L 2719655 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-440 920 chr3L 2854499 2854503 chr3L 2854565 2854581 4 76 2.0 4.5 3.2 1.0 82 chr3L 2854499 intron CG43444 - chr3L 2854540 intron CG43444 - chr3L 2854581 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-440 921 chr3L 2908131 2908178 chr3L 2908252 2908284 9 115 5.0 4.5 4.8 1.6 153 chr3L 2908131 intron Shab + chr3L 2908208 intron Shab + chr3L 2908284 intron Shab + chr3L_9_2905001 chr3L_2905001 RAL-440 922 chr3L 2927822 2927872 chr3L 2936118 2936154 Tirant 8 8290 0.5 1.0 0.8 4.4 8332 chr3L 2927822 intron Shab + chr3L 2931988 intron Shab + chr3L 2936154 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-440 923 chr3L 3057261 3057279 chr3L 3057401 3057441 10 156 4.0 1.5 2.8 2.6 180 chr3L 3057261 exon CG32486 - chr3L 3057351 intron CG32486 - chr3L 3057441 exon CG32486 - chr3L_10_3055001 chr3L_3055001 RAL-440 924 chr3L 3259817 3259833 chr3L 3259923 3259948 6 117 0.0 3.5 1.8 2.1 131 chr3L 3259817 intron ckd + chr3L 3259882 intron ckd + chr3L 3259948 intron ckd + chr3L_6_3255001 chr3L_3255001 RAL-440 925 chr3L 3281443 3281454 chr3L 3281944 3281966 Doc 4 508 5.0 8.5 6.8 0.5 523 chr3L 3281443 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281966 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-440 926 chr3L 3281458 3281478 chr3L 3281939 3281941 Doc 10 491 2.5 8.5 5.5 1.5 483 chr3L 3281458 intron CG12017 + chr3L 3281700 intron CG12017 + chr3L 3281941 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-440 927 chr3L 3285637 3285664 chr3L 3285728 3285728 10 92 2.5 2.5 2.5 2.9 91 chr3L 3285637 intron CG12017 + chr3L 3285682 intron CG12017 + chr3L 3285728 intron CG12017 + chr3L_10_3285001 chr3L_3285001 RAL-440 928 chr3L 3310288 3310326 chr3L 3310371 3310411 19 86 3.0 5.0 4.0 3.8 123 chr3L 3310288 intron ZnT63C + chr3L 3310350 intron ZnT63C + chr3L 3310411 intron ZnT63C + chr3L_19_3310001 chr3L_3310001 RAL-440 929 chr3L 3315981 3316004 chr3L 3316102 3316106 7 114 3.0 1.5 2.2 2.2 125 chr3L 3315981 intergenic Drsl4 + chr3L 3316044 intergenic Drsl4 + chr3L 3316106 intergenic Drsl4 + chr3L_7_3315001 chr3L_3315001 RAL-440 930 chr3L 3317523 3317566 chr3L 3317614 3317643 8 85 1.0 4.0 2.5 2.3 120 chr3L 3317523 intergenic Drsl5 + chr3L 3317583 intergenic Drsl5 +,PIG-C - chr3L 3317643 intergenic PIG-C -,Drsl5 + chr3L_8_3315001 chr3L_3315001 RAL-440 931 chr3L 3470138 3470181 chr3L 3470233 3470276 5 95 1.0 1.5 1.2 2.3 138 chr3L 3470138 intron CG14971 - chr3L 3470207 intron CG14971 - chr3L 3470276 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-440 932 chr3L 3475082 3475093 chr3L 3475530 3475557 jockey 5 457 1.5 6.0 3.8 1.0 475 chr3L 3475082 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_5_3475001 chr3L_3475001 RAL-440 933 chr3L 3494178 3494201 chr3L 3494275 3494296 8 96 1.0 2.5 1.8 2.9 118 chr3L 3494178 intron CG42324 + chr3L 3494237 intron CG42324 + chr3L 3494296 intron CG42324 + chr3L_8_3490001 chr3L_3490001 RAL-440 934 chr3L 3494756 3494781 chr3L 3494847 3494870 9 94 3.0 6.0 4.5 1.6 114 chr3L 3494756 intron CG42324 + chr3L 3494813 intron CG42324 + chr3L 3494870 intron CG42324 + chr3L_9_3490001 chr3L_3490001 RAL-440 935 chr3L 3571057 3571062 chr3L 3571147 3571158 4 92 4.5 5.0 4.8 0.7 101 chr3L 3571057 intron Eip63E + chr3L 3571108 intron Eip63E + chr3L 3571158 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-440 936 chr3L 3581738 3581776 chr3L 3581832 3581865 9 94 2.5 5.0 3.8 1.9 127 chr3L 3581738 intron Eip63E + chr3L 3581802 intron Eip63E + chr3L 3581865 intron Eip63E + chr3L_9_3580001 chr3L_3580001 RAL-440 937 chr3L 3585610 3585625 chr3L 3585703 3585718 6 102 0.0 1.5 0.8 3.3 108 chr3L 3585610 intron Eip63E + chr3L 3585664 intron Eip63E + chr3L 3585718 intron Eip63E + chr3L_6_3585001 chr3L_3585001 RAL-440 938 chr3L 3593886 3593894 chr3L 3593991 3593999 4 102 3.5 0.0 1.8 1.4 113 chr3L 3593886 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593942 intron Eip63E + chr3L 3593999 intron Eip63E + chr3L_4_3590001 chr3L_3590001 RAL-440 939 chr3L 3601281 3601331 chr3L 3606612 3606661 copia 12 5325 2.5 3.5 3.0 3.0 5380 chr3L 3601281 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606661 intron Eip63E + chr3L_12_3600001 chr3L_3600001 RAL-440 940 chr3L 3655570 3655613 chr3L 3655689 3655708 8 115 2.0 3.0 2.5 2.3 138 chr3L 3655570 intergenic not near genes chr3L 3655639 intergenic not near genes chr3L 3655708 intergenic not near genes chr3L_8_3655001 chr3L_3655001 RAL-440 941 chr3L 3766718 3766749 chr3L 3766824 3766853 4 104 3.0 0.5 1.8 1.4 135 chr3L 3766718 intron CG32264 - chr3L 3766786 intron CG32264 - chr3L 3766853 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-440 942 chr3L 3783262 3783287 chr3L 3783349 3783356 4 82 2.0 4.5 3.2 1.0 94 chr3L 3783262 intron CG32264 - chr3L 3783309 intron CG32264 - chr3L 3783356 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-440 943 chr3L 3797233 3797265 chr3L 3797325 3797364 4 96 1.0 2.0 1.5 1.6 131 chr3L 3797233 intron CG32264 - chr3L 3797298 intron CG32264 - chr3L 3797364 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-440 944 chr3L 3801938 3801978 chr3L 3802114 3802148 10 180 3.5 4.0 3.8 2.1 210 chr3L 3801938 intron CG32264 - chr3L 3802043 intron CG32264 - chr3L 3802148 intron CG32264 - chr3L_10_3800001 chr3L_3800001 RAL-440 945 chr3L 3833727 3833752 chr3L 3833984 3834013 pogo 4 256 5.5 1.5 3.5 0.9 286 chr3L 3833727 intron enc + chr3L 3833870 intron enc + chr3L 3834013 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-440 946 chr3L 4099861 4099897 chr3L 4099963 4099983 5 98 1.0 4.5 2.8 1.3 122 chr3L 4099861 intron CG14995 - chr3L 4099922 intron CG14995 - chr3L 4099983 intron CG14995 - chr3L_5_4095001 chr3L_4095001 RAL-440 947 chr3L 4120061 4120092 chr3L 4120143 4120177 7 83 2.5 5.5 4.0 1.4 116 chr3L 4120061 intron Chd64 - chr3L 4120119 intron Chd64 - chr3L 4120177 intron Chd64 - chr3L_7_4120001 chr3L_4120001 RAL-440 948 chr3L 4195134 4195166 chr3L 4195240 4195275 8 108 4.0 3.0 3.5 1.8 141 chr3L 4195134 exon CG43367 + chr3L 4195204 intron CG43367 + chr3L 4195275 intron CG43367 + chr3L_8_4195001 chr3L_4195001 RAL-440 949 chr3L 4328735 4328756 chr3L 4336251 4336273 412 7 7514 3.5 3.0 3.2 1.7 7538 chr3L 4328735 intron Cip4 - chr3L 4332504 intron Cip4 - chr3L 4336273 exon Cip4 - chr3L_7_4330001 chr3L_4330001 RAL-440 950 chr3L 4343506 4343518 chr3L 4343587 4343606 5 86 1.5 0.5 1.0 2.5 100 chr3L 4343506 intron Cip4 - chr3L 4343556 intron Cip4 - chr3L 4343606 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-440 951 chr3L 4344879 4345066 chr3L 4345001 4345156 13 104 0.0 0.0 0.0 13.0 277 chr3L 4344879 intron Cip4 - chr3L 4345018 intron Cip4 - chr3L 4345156 intron Cip4 - chr3L_13_4345001 chr3L_4345001 RAL-440 952 chr3L 4503897 4503918 chr3L 4503992 4504001 4 93 4.5 0.0 2.2 1.2 104 chr3L 4503897 intron NT1 - chr3L 4503949 intron NT1 - chr3L 4504001 intron NT1 - chr3L_4_4500001 chr3L_4500001 RAL-440 953 chr3L 4748700 4748730 chr3L 4748796 4748821 8 98 1.0 3.0 2.0 2.7 121 chr3L 4748700 intron RhoGEF64C + chr3L 4748760 intron RhoGEF64C + chr3L 4748821 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-440 954 chr3L 4858319 4858334 chr3L 4858406 4858443 6 97 2.5 6.0 4.2 1.2 124 chr3L 4858319 intergenic not near genes chr3L 4858381 intergenic not near genes chr3L 4858443 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-440 955 chr3L 4901108 4901160 chr3L 4907315 4907340 diver 11 6198 4.5 1.0 2.8 2.9 6232 chr3L 4901108 intergenic CG13704 + chr3L 4904224 intergenic not near genes chr3L 4907340 intergenic not near genes chr3L_11_4900001 chr3L_4900001 RAL-440 956 chr3L 4925791 4925832 chr3L 4925932 4925974 5 140 3.5 4.0 3.8 1.0 183 chr3L 4925791 intergenic not near genes chr3L 4925882 intergenic not near genes chr3L 4925974 intergenic not near genes chr3L_5_4925001 chr3L_4925001 RAL-440 957 chr3L 5034149 5034186 chr3L 5043309 5043352 roo 10 9160 2.0 1.0 1.5 4.0 9203 chr3L 5034149 intron Con - chr3L 5038750 intron Con - chr3L 5043352 intron Con - chr3L_10_5035001 chr3L_5035001 RAL-440 958 chr3L 5045438 5045449 chr3L 5050239 5050245 Doc 5 4799 5.5 4.5 5.0 0.8 4807 chr3L 5045438 intron Con - chr3L 5047842 intron Con - chr3L 5050245 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-440 959 chr3L 5045451 5045466 chr3L 5050236 5050267 Doc 4 4794 5.0 4.0 4.5 0.7 4816 chr3L 5045451 intron Con - chr3L 5047859 intron Con - chr3L 5050267 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-440 960 chr3L 5103596 5103611 chr3L 5103691 5103711 4 98 4.5 0.0 2.2 1.2 115 chr3L 5103596 intergenic not near genes chr3L 5103654 intergenic not near genes chr3L 5103711 intergenic not near genes chr3L_4_5100001 chr3L_5100001 RAL-440 961 chr3L 5104469 5104498 chr3L 5124620 5124644 6 20144 2.5 4.5 3.5 1.3 20175 chr3L 5104469 intergenic not near genes chr3L 5114556 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-440 962 chr3L 5248985 5249001 chr3L 5249089 5249101 5 101 2.0 8.0 5.0 0.8 116 chr3L 5248985 intron shep - chr3L 5249043 intron shep - chr3L 5249101 intron shep - chr3L_5_5245001 chr3L_5245001 RAL-440 963 chr3L 5263312 5263339 chr3L 5263394 5263434 9 90 2.5 4.5 3.5 2.0 122 chr3L 5263312 intron shep - chr3L 5263373 intron shep - chr3L 5263434 intron shep - chr3L_9_5260001 chr3L_5260001 RAL-440 964 chr3L 5299139 5299158 chr3L 5306595 5306614 Quasimodo 4 7456 6.5 2.5 4.5 0.7 7475 chr3L 5299139 intergenic not near genes chr3L 5302876 intergenic not near genes chr3L 5306614 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-440 965 chr3L 5327459 5327478 chr3L 5327550 5327577 5 101 2.0 5.5 3.8 1.0 118 chr3L 5327459 intergenic not near genes chr3L 5327518 intergenic not near genes chr3L 5327577 intergenic not near genes chr3L_5_5325001 chr3L_5325001 RAL-440 966 chr3L 5376037 5376044 chr3L 5376121 5376133 4 89 2.0 3.0 2.5 1.1 96 chr3L 5376037 intergenic not near genes chr3L 5376085 intergenic not near genes chr3L 5376133 intergenic not near genes chr3L_4_5375001 chr3L_5375001 RAL-440 967 chr3L 5403424 5403478 chr3L 5403842 5403883 5 414 3.0 1.5 2.2 1.6 459 chr3L 5403424 intergenic not near genes chr3L 5403654 intergenic not near genes chr3L 5403883 intergenic not near genes chr3L_5_5400001 chr3L_5400001 RAL-440 968 chr3L 5516413 5516438 chr3L 5516511 5516523 5 93 5.0 3.5 4.2 1.0 110 chr3L 5516413 intron Lkr - chr3L 5516468 intron Lkr - chr3L 5516523 intron Lkr - chr3L_5_5515001 chr3L_5515001 RAL-440 969 chr3L 5667615 5667632 chr3L 5667715 5667717 4 94 7.5 0.0 3.8 0.8 102 chr3L 5667615 intron sif + chr3L 5667666 intron sif + chr3L 5667717 intron sif + chr3L_4_5665001 chr3L_5665001 RAL-440 970 chr3L 5910026 5910056 chr3L 5910275 5910313 pogo 12 252 5.5 7.5 6.5 1.6 287 chr3L 5910026 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910313 intron CG13288 + chr3L_12_5910001 chr3L_5910001 RAL-440 971 chr3L 5983817 5983865 chr3L 5983953 5984003 10 133 2.0 0.5 1.2 4.5 186 chr3L 5983817 3` UTR CR45439 - chr3L 5983910 intergenic CR45439 -,CR45440 - chr3L 5984003 intergenic CR45440 -,CR45439 - chr3L_10_5980001 chr3L_5980001 RAL-440 972 chr3L 6001683 6001713 chr3L 6004391 6004427 jockey 8 2716 5.5 5.0 5.2 1.3 2744 chr3L 6001683 intron PVRAP + chr3L 6003055 intron PVRAP + chr3L 6004427 intron PVRAP + chr3L_8_6000001 chr3L_6000001 RAL-440 973 chr3L 6169110 6169128 chr3L 6169210 6169219 7 95 5.5 5.0 5.2 1.1 109 chr3L 6169110 3` UTR CG10289 - chr3L 6169164 3` UTR CG10289 - chr3L 6169219 3` UTR CG10289 - chr3L_7_6165001 chr3L_6165001 RAL-440 974 chr3L 6220908 6220936 chr3L 6230066 6230101 roo 12 9164 11.0 7.0 9.0 1.2 9193 chr3L 6220908 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230101 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-440 975 chr3L 6334988 6335042 chr3L 6335479 6335525 297 9 485 1.0 4.5 2.8 2.4 537 chr3L 6334988 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335525 intron CG13300 - chr3L_9_6335001 chr3L_6335001 RAL-440 976 chr3L 6405651 6405687 chr3L 6432125 6432159 roo 7 26477 3.0 1.5 2.2 2.2 26508 chr3L 6405651 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432159 intron CG42747 + chr3L_7_6415001 chr3L_6415001 RAL-440 977 chr3L 6486513 6486535 chr3L 6486621 6486643 4 104 2.5 3.0 2.8 1.1 130 chr3L 6486513 3` UTR CG10147 - chr3L 6486578 3` UTR CG10147 - chr3L 6486643 3` UTR CG10147 - chr3L_4_6485001 chr3L_6485001 RAL-440 978 chr3L 6550251 6550280 chr3L 6550337 6550376 11 89 7.0 5.0 6.0 1.6 125 chr3L 6550251 intergenic sfl +,CG18769 + chr3L 6550314 intergenic sfl +,CG18769 + chr3L 6550376 intergenic sfl +,CG18769 + chr3L_11_6550001 chr3L_6550001 RAL-440 979 chr3L 6562848 6562863 chr3L 6562933 6562957 6 91 3.0 5.0 4.0 1.2 109 chr3L 6562848 intron CG18769 + chr3L 6562902 intron CG18769 + chr3L 6562957 intron CG18769 + chr3L_6_6560001 chr3L_6560001 RAL-440 980 chr3L 6855915 6855948 chr3L 6860718 6860733 Doc 7 4794 2.5 2.0 2.2 2.2 4818 chr3L 6855915 intergenic not near genes chr3L 6858324 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-440 981 chr3L 6868713 6868736 chr3L 6868803 6868834 4 96 1.0 3.0 2.0 1.3 121 chr3L 6868713 intergenic not near genes chr3L 6868774 intergenic not near genes chr3L 6868834 intergenic not near genes chr3L_4_6865001 chr3L_6865001 RAL-440 982 chr3L 6887532 6887548 chr3L 6895023 6895043 roo 4 7497 3.5 3.0 3.2 1.0 7511 chr3L 6887532 intergenic not near genes chr3L 6891288 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-440 983 chr3L 6908010 6908047 chr3L 6908101 6908138 5 92 5.0 0.0 2.5 1.4 128 chr3L 6908010 intergenic not near genes chr3L 6908074 intergenic not near genes chr3L 6908138 intergenic not near genes chr3L_5_6905001 chr3L_6905001 RAL-440 984 chr3L 6942056 6942073 chr3L 6942175 6942181 6 115 5.0 7.5 6.2 0.8 125 chr3L 6942056 intergenic not near genes chr3L 6942118 intergenic not near genes chr3L 6942181 intergenic not near genes chr3L_6_6940001 chr3L_6940001 RAL-440 985 chr3L 6974503 6974523 chr3L 6974607 6974614 5 102 0.5 4.0 2.2 1.6 111 chr3L 6974503 intron Galphai - chr3L 6974558 intron Galphai - chr3L 6974614 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-440 986 chr3L 6994892 6994914 chr3L 6995501 6995539 BS 4 624 0.5 1.0 0.8 2.2 647 chr3L 6994892 intergenic bin + chr3L 6995216 intergenic not near genes chr3L 6995539 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-440 987 chr3L 7079605 7079632 chr3L 7079683 7079711 12 88 3.0 0.5 1.8 4.3 106 chr3L 7079605 intergenic not near genes chr3L 7079658 intergenic not near genes chr3L 7079711 intergenic not near genes chr3L_12_7075001 chr3L_7075001 RAL-440 988 chr3L 7107322 7107357 chr3L 7107416 7107455 11 90 3.0 3.0 3.0 2.8 133 chr3L 7107322 intron form3 + chr3L 7107388 intron form3 + chr3L 7107455 intron form3 + chr3L_11_7105001 chr3L_7105001 RAL-440 989 chr3L 7112573 7112616 chr3L 7112675 7112689 8 94 2.5 6.5 4.5 1.5 116 chr3L 7112573 intron form3 + chr3L 7112631 intron form3 + chr3L 7112689 intron form3 + chr3L_8_7110001 chr3L_7110001 RAL-440 990 chr3L 7129933 7129969 chr3L 7130145 7130168 BS 5 207 0.0 3.0 1.5 2.0 235 chr3L 7129933 intergenic CG15829 + chr3L 7130050 intergenic CG15829 + chr3L 7130168 intergenic CG15829 + chr3L_5_7130001 chr3L_7130001 RAL-440 991 chr3L 7206008 7206050 chr3L 7206141 7206190 10 134 2.0 2.5 2.2 3.1 182 chr3L 7206008 intergenic not near genes chr3L 7206099 intergenic not near genes chr3L 7206190 intergenic not near genes chr3L_10_7205001 chr3L_7205001 RAL-440 992 chr3L 7236611 7236624 chr3L 7236805 7236817 4 192 1.0 0.5 0.8 2.2 206 chr3L 7236611 intergenic CG14829 - chr3L 7236714 intergenic CG14829 - chr3L 7236817 3` UTR CG14829 - chr3L_4_7235001 chr3L_7235001 RAL-440 993 chr3L 7285458 7285470 chr3L 7285528 7285545 7 86 4.0 2.0 3.0 1.8 87 chr3L 7285458 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285545 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-440 994 chr3L 7377308 7377344 chr3L 7380422 7380445 297 8 3113 4.5 7.0 5.8 1.2 3137 chr3L 7377308 intron SMSr - chr3L 7378876 intron SMSr - chr3L 7380445 intron SMSr - chr3L_8_7375001 chr3L_7375001 RAL-440 995 chr3L 7444003 7444025 chr3L 7444121 7444143 7 114 5.0 0.0 2.5 2.0 140 chr3L 7444003 intron CG42458 + chr3L 7444073 intron CG42458 + chr3L 7444143 intron CG42458 + chr3L_7_7440001 chr3L_7440001 RAL-440 996 chr3L 7450684 7450717 chr3L 7450769 7450817 8 92 2.5 2.0 2.2 2.5 133 chr3L 7450684 intron CG42458 + chr3L 7450750 intron CG42458 + chr3L 7450817 intron CG42458 + chr3L_8_7450001 chr3L_7450001 RAL-440 997 chr3L 7498748 7498789 chr3L 7503544 7503577 F-element 5 4794 1.5 2.5 2.0 1.7 4829 chr3L 7498748 5` UTR CG8539 - chr3L 7501162 intergenic not near genes chr3L 7503577 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-440 998 chr3L 7524138 7524174 chr3L 7524235 7524270 5 95 3.5 0.5 2.0 1.7 132 chr3L 7524138 intron ltl + chr3L 7524204 intron ltl + chr3L 7524270 intron ltl + chr3L_5_7520001 chr3L_7520001 RAL-440 999 chr3L 7571683 7571706 chr3L 7571782 7571818 5 102 4.0 5.5 4.8 0.9 135 chr3L 7571683 intergenic not near genes chr3L 7571750 intergenic not near genes chr3L 7571818 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-440 1000 chr3L 7591131 7591167 chr3L 7591237 7591259 5 99 3.5 4.0 3.8 1.0 128 chr3L 7591131 intergenic CG7716 - chr3L 7591195 intergenic CG7716 - chr3L 7591259 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-440 1001 chr3L 7752148 7752178 chr3L 7752253 7752281 6 118 3.5 6.5 5.0 1.0 133 chr3L 7752148 intron CG32373 + chr3L 7752214 intron CG32373 + chr3L 7752281 intron CG32373 + chr3L_6_7750001 chr3L_7750001 RAL-440 1002 chr3L 7793708 7793744 chr3L 7800767 7800798 297 14 7065 4.0 4.5 4.2 2.7 7090 chr3L 7793708 intron CG32369 - chr3L 7797253 intron CG32369 - chr3L 7800798 intron CG32369 - chr3L_14_7795001 chr3L_7795001 RAL-440 1003 chr3L 7845378 7845407 chr3L 7845470 7845490 4 88 6.5 1.0 3.8 0.8 112 chr3L 7845378 intron Pdp1 - chr3L 7845434 intron Pdp1 - chr3L 7845490 intron Pdp1 - chr3L_4_7845001 chr3L_7845001 RAL-440 1004 chr3L 7882164 7882189 chr3L 7882275 7882283 6 106 0.5 6.5 3.5 1.3 119 chr3L 7882164 intron CG32365 + chr3L 7882224 intron CG32365 + chr3L 7882283 intron CG32365 + chr3L_6_7880001 chr3L_7880001 RAL-440 1005 chr3L 7883728 7883743 chr3L 7883903 7883918 4 174 7.0 0.0 3.5 0.9 190 chr3L 7883728 intron CG32365 + chr3L 7883823 intron CG32365 + chr3L 7883918 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-440 1006 chr3L 7883746 7883774 chr3L 7883901 7883930 6 164 3.5 0.0 1.8 2.1 184 chr3L 7883746 intron CG32365 + chr3L 7883838 intron CG32365 + chr3L 7883930 intron CG32365 + chr3L_6_7880001 chr3L_7880001 RAL-440 1007 chr3L 7886502 7886542 chr3L 7889032 7889039 Stalker4 9 2528 1.0 2.0 1.5 3.6 2537 chr3L 7886502 intron CG32365 + chr3L 7887770 intron CG32365 + chr3L 7889039 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-440 1008 chr3L 7916817 7916862 chr3L 7926008 7926048 roo 6 9189 2.5 2.0 2.2 1.9 9231 chr3L 7916817 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926048 3` UTR syd - chr3L_6_7920001 chr3L_7920001 RAL-440 1009 chr3L 8025899 8025933 chr3L 8026002 8026022 10 107 3.0 8.0 5.5 1.5 123 chr3L 8025899 intron nmo + chr3L 8025960 intron nmo + chr3L 8026022 intron nmo + chr3L_10_8025001 chr3L_8025001 RAL-440 1010 chr3L 8064580 8064631 chr3L 8064812 8064863 4 232 2.5 0.0 1.2 1.8 283 chr3L 8064580 intron Ect4 + chr3L 8064722 intron Ect4 + chr3L 8064863 intron Ect4 + chr3L_4_8060001 chr3L_8060001 RAL-440 1011 chr3L 8076342 8076382 chr3L 8076703 8076729 8 356 3.0 4.5 3.8 1.7 387 chr3L 8076342 intron Ect4 + chr3L 8076536 intron Ect4 + chr3L 8076729 intron Ect4 + chr3L_8_8075001 chr3L_8075001 RAL-440 1012 chr3L 8114757 8114798 chr3L 8114859 8114898 4 98 1.0 1.0 1.0 2.0 141 chr3L 8114757 exon Arp3 - chr3L 8114828 intron Arp3 - chr3L 8114898 intron Arp3 - chr3L_4_8110001 chr3L_8110001 RAL-440 1013 chr3L 8208121 8208152 chr3L 8208257 8208301 7 135 4.0 6.5 5.2 1.1 180 chr3L 8208121 intergenic not near genes chr3L 8208211 intergenic not near genes chr3L 8208301 intergenic not near genes chr3L_7_8205001 chr3L_8205001 RAL-440 1014 chr3L 8233577 8233593 chr3L 8238855 8238867 Rt1a 5 5272 1.0 10.0 5.5 0.8 5290 chr3L 8233577 intron CG7213 - chr3L 8236222 intron CG7213 - chr3L 8238867 intron,intron CG7213 -,Dscam4 + chr3L_5_8235001 chr3L_8235001 RAL-440 1015 chr3L 8243800 8243850 chr3L 8243903 8243937 11 96 3.5 4.0 3.8 2.3 137 chr3L 8243800 intron Dscam4 + chr3L 8243868 intron Dscam4 + chr3L 8243937 intron Dscam4 + chr3L_11_8240001 chr3L_8240001 RAL-440 1016 chr3L 8295772 8295791 chr3L 8295950 8295968 4 177 14.0 6.0 10.0 0.4 196 chr3L 8295772 intergenic CG7201 - chr3L 8295870 intergenic not near genes chr3L 8295968 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-440 1017 chr3L 8295794 8295823 chr3L 8295947 8295999 9 173 7.0 6.0 6.5 1.2 205 chr3L 8295794 intergenic CG7201 - chr3L 8295896 intergenic not near genes chr3L 8295999 intergenic not near genes chr3L_9_8295001 chr3L_8295001 RAL-440 1018 chr3L 8319430 8319449 chr3L 8319515 8319537 4 82 5.5 5.0 5.2 0.6 107 chr3L 8319430 intergenic CG43059 - chr3L 8319484 intergenic not near genes chr3L 8319537 intergenic not near genes chr3L_4_8315001 chr3L_8315001 RAL-440 1019 chr3L 8443552 8443582 chr3L 8443652 8443682 4 96 1.5 2.0 1.8 1.4 130 chr3L 8443552 3` UTR CG6983 - chr3L 8443617 3` UTR CG6983 - chr3L 8443682 3` UTR CG6983 - chr3L_4_8440001 chr3L_8440001 RAL-440 1020 chr3L 8498297 8498327 chr3L 8505771 8505801 blood 5 7478 0.0 7.5 3.8 1.0 7504 chr3L 8498297 intron CG43163 - chr3L 8502049 intron CG43163 - chr3L 8505801 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-440 1021 chr3L 8542085 8542106 chr3L 8542173 8542205 5 87 3.5 3.0 3.2 1.2 120 chr3L 8542085 intergenic not near genes chr3L 8542145 intergenic not near genes chr3L 8542205 intergenic not near genes chr3L_5_8540001 chr3L_8540001 RAL-440 1022 chr3L 8579833 8579876 chr3L 8579932 8579957 5 84 1.5 4.0 2.8 1.3 124 chr3L 8579833 intron CG43078 + chr3L 8579895 intron CG43078 + chr3L 8579957 intron CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-440 1023 chr3L 8606897 8606936 chr3L 8607018 8607064 4 123 3.0 4.0 3.5 0.9 167 chr3L 8606897 intron CG6282 + chr3L 8606980 intron CG6282 + chr3L 8607064 intron CG6282 + chr3L_4_8605001 chr3L_8605001 RAL-440 1024 chr3L 8690581 8690631 chr3L 8690845 8690866 14 251 9.5 4.0 6.8 1.8 285 chr3L 8690581 intergenic not near genes chr3L 8690724 intergenic not near genes chr3L 8690866 intergenic not near genes chr3L_14_8690001 chr3L_8690001 RAL-440 1025 chr3L 8849218 8849239 chr3L 8849287 8849317 5 79 1.5 2.0 1.8 1.8 99 chr3L 8849218 intron dally + chr3L 8849268 intron dally + chr3L 8849317 intron dally + chr3L_5_8845001 chr3L_8845001 RAL-440 1026 chr3L 8884399 8884424 chr3L 8884603 8884610 6 197 3.0 0.5 1.8 2.1 211 chr3L 8884399 intron dally + chr3L 8884504 intron dally + chr3L 8884610 intron dally + chr3L_6_8880001 chr3L_8880001 RAL-440 1027 chr3L 8928260 8928296 chr3L 8928348 8928391 6 88 1.5 3.5 2.5 1.7 131 chr3L 8928260 intron Tsp66E + chr3L 8928326 intron Tsp66E + chr3L 8928391 intron Tsp66E + chr3L_6_8925001 chr3L_8925001 RAL-440 1028 chr3L 9009941 9009976 chr3L 9010060 9010099 6 116 1.5 3.5 2.5 1.7 158 chr3L 9009941 intergenic CG5194 - chr3L 9010020 intergenic CG5194 - chr3L 9010099 intergenic CG5194 - chr3L_6_9010001 chr3L_9010001 RAL-440 1029 chr3L 9076923 9076956 chr3L 9084488 9084518 412 9 7568 6.5 5.5 6.0 1.3 7595 chr3L 9076923 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084518 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-440 1030 chr3L 9130562 9130582 chr3L 9134321 9134324 412 4 3758 6.0 5.5 5.8 0.6 3762 chr3L 9130562 intergenic bol - chr3L 9132443 intergenic not near genes chr3L 9134324 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-440 1031 chr3L 9164677 9164714 chr3L 9166164 9166200 hobo 13 1480 8.0 1.0 4.5 2.4 1523 chr3L 9164677 intron Rdl - chr3L 9165438 intron Rdl - chr3L 9166200 intron Rdl - chr3L_13_9165001 chr3L_9165001 RAL-440 1032 chr3L 9202491 9202541 chr3L 9202608 9202634 7 107 5.5 5.0 5.2 1.1 143 chr3L 9202491 intergenic not near genes chr3L 9202562 intergenic not near genes chr3L 9202634 intergenic Slc45-1 - chr3L_7_9200001 chr3L_9200001 RAL-440 1033 chr3L 9443499 9443540 chr3L 9445300 9445305 S-element 7 1794 3.0 1.0 2.0 2.3 1806 chr3L 9443499 intron CG33926 + chr3L 9444402 intron CG33926 + chr3L 9445305 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-440 1034 chr3L 9498200 9498231 chr3L 9498284 9498314 4 89 2.5 2.5 2.5 1.1 114 chr3L 9498200 intron path - chr3L 9498257 intron path - chr3L 9498314 intron path - chr3L_4_9495001 chr3L_9495001 RAL-440 1035 chr3L 9501696 9501731 chr3L 9502188 9502237 roo 8 500 3.0 2.0 2.5 2.3 541 chr3L 9501696 intron path - chr3L 9501966 intron path - chr3L 9502237 intron path - chr3L_8_9500001 chr3L_9500001 RAL-440 1036 chr3L 9546664 9546671 chr3L 9546817 9546843 6 161 0.0 9.5 4.8 1.0 179 chr3L 9546664 intergenic not near genes chr3L 9546754 intergenic CG42673 + chr3L 9546843 intergenic CG42673 + chr3L_6_9545001 chr3L_9545001 RAL-440 1037 chr3L 9571900 9571906 chr3L 9572253 9572272 jockey 5 363 8.5 3.5 6.0 0.7 372 chr3L 9571900 intron CG42673 + chr3L 9572086 intron CG42673 + chr3L 9572272 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-440 1038 chr3L 9571908 9571931 chr3L 9572252 9572293 jockey 4 357 4.5 3.5 4.0 0.8 385 chr3L 9571908 intron CG42673 + chr3L 9572100 intron CG42673 + chr3L 9572293 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-440 1039 chr3L 9575922 9575938 chr3L 9580990 9581000 jockey 5 5080 8.5 9.0 8.8 0.5 5078 chr3L 9575922 intron CG42673 + chr3L 9578461 intron CG42673 + chr3L 9581000 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-440 1040 chr3L 9637836 9637882 chr3L 9637935 9637982 10 96 4.0 5.0 4.5 1.8 146 chr3L 9637836 intron fry - chr3L 9637909 intron fry - chr3L 9637982 intron fry - chr3L_10_9635001 chr3L_9635001 RAL-440 1041 chr3L 9639009 9639060 chr3L 9639114 9639150 4 97 0.0 3.5 1.8 1.4 141 chr3L 9639009 intron,3` UTR fry -,CG8329 + chr3L 9639080 intron fry - chr3L 9639150 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-440 1042 chr3L 9676171 9676204 chr3L 9676281 9676293 7 101 5.0 0.0 2.5 2.0 122 chr3L 9676171 intron fry - chr3L 9676232 intron fry - chr3L 9676293 intron fry - chr3L_7_9675001 chr3L_9675001 RAL-440 1043 chr3L 9741620 9741652 chr3L 9741715 9741745 5 102 0.5 4.5 2.5 1.4 125 chr3L 9741620 intron,intron CG42268 -,CR44348 + chr3L 9741682 intron,intron CG42268 -,CR44348 + chr3L 9741745 intron,intron CG42268 -,CR44348 + chr3L_5_9740001 chr3L_9740001 RAL-440 1044 chr3L 9929677 9929700 chr3L 9938459 9938493 roo 6 8786 3.0 6.0 4.5 1.1 8816 chr3L 9929677 intron CG34356 + chr3L 9934085 intron CG34356 + chr3L 9938493 intron CG34356 + chr3L_6_9930001 chr3L_9930001 RAL-440 1045 chr3L 9951177 9951226 chr3L 9951284 9951318 8 96 6.0 3.5 4.8 1.4 141 chr3L 9951177 intron CG34356 + chr3L 9951248 intron CG34356 + chr3L 9951318 intron CG34356 + chr3L_8_9950001 chr3L_9950001 RAL-440 1046 chr3L 9987096 9987136 chr3L 9987194 9987228 10 88 3.5 2.5 3.0 2.5 132 chr3L 9987096 intron dpr6 + chr3L 9987162 intron dpr6 + chr3L 9987228 intron dpr6 + chr3L_10_9985001 chr3L_9985001 RAL-440 1047 chr3L 10049535 10049571 chr3L 10049622 10049669 9 92 3.0 3.5 3.2 2.1 134 chr3L 10049535 intron dpr6 + chr3L 10049602 intron dpr6 + chr3L 10049669 intron dpr6 + chr3L_9_10045001 chr3L_10045001 RAL-440 1048 chr3L 10127751 10127767 chr3L 10127812 10127846 10 72 5.0 2.0 3.5 2.2 95 chr3L 10127751 intron dpr6 + chr3L 10127798 intron dpr6 + chr3L 10127846 intron dpr6 + chr3L_10_10125001 chr3L_10125001 RAL-440 1049 chr3L 10141294 10141333 chr3L 10141382 10141410 7 90 3.0 2.5 2.8 1.8 116 chr3L 10141294 intergenic not near genes chr3L 10141352 intergenic not near genes chr3L 10141410 intergenic not near genes chr3L_7_10140001 chr3L_10140001 RAL-440 1050 chr3L 10219217 10219267 chr3L 10219334 10219380 24 108 5.5 2.5 4.0 4.8 163 chr3L 10219217 exon CG32055 - chr3L 10219298 exon CG32055 - chr3L 10219380 exon CG32055 - chr3L_24_10215001 chr3L_10215001 RAL-440 1051 chr3L 10308730 10308755 chr3L 10308816 10308828 9 90 2.0 3.0 2.5 2.6 98 chr3L 10308730 intergenic not near genes chr3L 10308779 intergenic not near genes chr3L 10308828 intergenic not near genes chr3L_9_10305001 chr3L_10305001 RAL-440 1052 chr3L 10310348 10310381 chr3L 10310460 10310488 11 111 1.0 4.5 2.8 2.9 140 chr3L 10310348 intergenic not near genes chr3L 10310418 intergenic not near genes chr3L 10310488 intergenic not near genes chr3L_11_10310001 chr3L_10310001 RAL-440 1053 chr3L 10348650 10348675 chr3L 10348783 10348795 6 133 3.0 0.0 1.5 2.4 145 chr3L 10348650 intron CR44327 + chr3L 10348722 intron CR44327 + chr3L 10348795 intron CR44327 + chr3L_6_10345001 chr3L_10345001 RAL-440 1054 chr3L 10414929 10414971 chr3L 10417315 10417361 Doc 6 2381 0.5 4.0 2.2 1.9 2432 chr3L 10414929 intergenic CG12362 + chr3L 10416145 intergenic not near genes chr3L 10417361 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-440 1055 chr3L 10417570 10417605 chr3L 10417648 10417665 8 74 4.0 3.5 3.8 1.7 95 chr3L 10417570 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417665 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-440 1056 chr3L 10421338 10421384 chr3L 10421514 10421542 8 169 3.0 3.0 3.0 2.0 204 chr3L 10421338 intergenic not near genes chr3L 10421440 intergenic not near genes chr3L 10421542 intergenic not near genes chr3L_8_10420001 chr3L_10420001 RAL-440 1057 chr3L 10469910 10469960 chr3L 10470006 10470056 11 92 3.0 2.5 2.8 2.9 146 chr3L 10469910 intergenic not near genes chr3L 10469983 intergenic not near genes chr3L 10470056 intergenic not near genes chr3L_11_10465001 chr3L_10465001 RAL-440 1058 chr3L 10476574 10476597 chr3L 10476663 10476689 6 94 6.0 7.0 6.5 0.8 115 chr3L 10476574 intergenic not near genes chr3L 10476632 intergenic not near genes chr3L 10476689 intergenic not near genes chr3L_6_10475001 chr3L_10475001 RAL-440 1059 chr3L 10509469 10509511 chr3L 10509618 10509649 7 138 3.5 0.5 2.0 2.3 180 chr3L 10509469 intron A2bp1 + chr3L 10509559 intron A2bp1 + chr3L 10509649 intron A2bp1 + chr3L_7_10505001 chr3L_10505001 RAL-440 1060 chr3L 10518568 10518609 chr3L 10518715 10518754 9 151 1.5 1.5 1.5 3.6 186 chr3L 10518568 intron A2bp1 + chr3L 10518661 intron A2bp1 + chr3L 10518754 intron A2bp1 + chr3L_9_10515001 chr3L_10515001 RAL-440 1061 chr3L 10600445 10600458 chr3L 10600537 10600545 5 96 6.0 0.0 3.0 1.2 100 chr3L 10600445 intergenic not near genes chr3L 10600495 intergenic not near genes chr3L 10600545 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-440 1062 chr3L 10614108 10614134 chr3L 10615124 10615135 6 1008 6.5 2.5 4.5 1.1 1027 chr3L 10614108 intergenic not near genes chr3L 10614622 intergenic not near genes chr3L 10615135 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-440 1063 chr3L 10621841 10621872 chr3L 10621937 10621939 10 96 2.0 1.0 1.5 4.0 98 chr3L 10621841 intergenic not near genes chr3L 10621890 intergenic not near genes chr3L 10621939 intergenic not near genes chr3L_10_10620001 chr3L_10620001 RAL-440 1064 chr3L 10658067 10658212 chr3L 10658159 10658354 16 119 0.0 0.5 0.2 13.3 287 chr3L 10658067 intron CG32066 - chr3L 10658210 intron CG32066 - chr3L 10658354 intron CG32066 - chr3L_16_10655001 chr3L_10655001 RAL-440 1065 chr3L 10744392 10744425 chr3L 10744474 10744488 6 73 5.5 2.5 4.0 1.2 96 chr3L 10744392 intergenic not near genes chr3L 10744440 intergenic not near genes chr3L 10744488 intergenic not near genes chr3L_6_10740001 chr3L_10740001 RAL-440 1066 chr3L 10745117 10745164 chr3L 10745263 10745295 12 133 3.0 5.5 4.2 2.3 178 chr3L 10745117 intergenic not near genes chr3L 10745206 intergenic not near genes chr3L 10745295 intergenic not near genes chr3L_12_10745001 chr3L_10745001 RAL-440 1067 chr3L 11083501 11083535 chr3L 11083600 11083641 7 113 4.5 3.5 4.0 1.4 140 chr3L 11083501 intron JIL-1 - chr3L 11083571 intron JIL-1 - chr3L 11083641 intron JIL-1 - chr3L_7_11080001 chr3L_11080001 RAL-440 1068 chr3L 11085666 11085696 chr3L 11085769 11085786 7 99 4.5 5.0 4.8 1.2 120 chr3L 11085666 exon JIL-1 - chr3L 11085726 intron JIL-1 - chr3L 11085786 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-440 1069 chr3L 11087064 11087082 chr3L 11088858 11088875 S-element 7 1797 0.5 2.5 1.5 2.8 1811 chr3L 11087064 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088875 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-440 1070 chr3L 11105279 11105303 chr3L 11107001 11107027 X-element 6 1728 2.0 1.5 1.8 2.1 1748 chr3L 11105279 intergenic not near genes chr3L 11106153 intergenic not near genes chr3L 11107027 3` UTR CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-440 1071 chr3L 11135484 11135531 chr3L 11135734 11135765 4 245 0.5 0.5 0.5 2.7 281 chr3L 11135484 intergenic CG14143 + chr3L 11135624 intergenic CG14143 +,CG32082 + chr3L 11135765 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-440 1072 chr3L 11217498 11217529 chr3L 11217593 11217631 10 97 4.0 1.0 2.5 2.9 133 chr3L 11217498 intron CG42671 + chr3L 11217564 intron CG42671 + chr3L 11217631 intron CG42671 + chr3L_10_11215001 chr3L_11215001 RAL-440 1073 chr3L 11241767 11241793 chr3L 11241868 11241894 5 95 0.5 3.5 2.0 1.7 127 chr3L 11241767 intergenic not near genes chr3L 11241830 intergenic not near genes chr3L 11241894 intergenic not near genes chr3L_5_11240001 chr3L_11240001 RAL-440 1074 chr3L 11245088 11245099 chr3L 11245172 11245191 5 90 0.5 12.0 6.2 0.7 103 chr3L 11245088 intergenic not near genes chr3L 11245140 intergenic not near genes chr3L 11245191 intergenic not near genes chr3L_5_11245001 chr3L_11245001 RAL-440 1075 chr3L 11264458 11264494 chr3L 11271416 11271458 17.6 6 6962 2.5 1.0 1.8 2.1 7000 chr3L 11264458 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271458 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-440 1076 chr3L 11277455 11277477 chr3L 11278455 11278468 Rt1a 5 1003 0.0 2.5 1.2 2.3 1013 chr3L 11277455 intergenic not near genes chr3L 11277962 intergenic not near genes chr3L 11278468 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-440 1077 chr3L 11290612 11290657 chr3L 11290947 11291000 15 337 2.0 4.0 3.0 3.8 388 chr3L 11290612 intron CG6175 - chr3L 11290806 intron CG6175 - chr3L 11291000 intron CG6175 - chr3L_15_11290001 chr3L_11290001 RAL-440 1078 chr3L 11329679 11329697 chr3L 11332895 11332900 jockey 4 3212 7.0 2.5 4.8 0.7 3221 chr3L 11329679 intergenic not near genes chr3L 11331290 intergenic not near genes chr3L 11332900 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-440 1079 chr3L 11329704 11329728 chr3L 11332894 11332925 jockey 5 3198 4.5 2.0 3.2 1.2 3221 chr3L 11329704 intergenic not near genes chr3L 11331314 intergenic not near genes chr3L 11332925 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-440 1080 chr3L 11435552 11435584 chr3L 11435730 11435767 12 181 5.5 6.5 6.0 1.7 215 chr3L 11435552 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435767 5` UTR CR44548 + chr3L_12_11435001 chr3L_11435001 RAL-440 1081 chr3L 11445051 11445062 chr3L 11445139 11445157 4 90 0.0 3.5 1.8 1.4 106 chr3L 11445051 3` UTR CR44549 - chr3L 11445104 3` UTR CR44549 - chr3L 11445157 intergenic CG7557 +,CR44549 - chr3L_4_11445001 chr3L_11445001 RAL-440 1082 chr3L 11471571 11471605 chr3L 11471659 11471703 5 88 3.0 3.5 3.2 1.2 132 chr3L 11471571 intergenic not near genes chr3L 11471637 intergenic not near genes chr3L 11471703 intergenic not near genes chr3L_5_11470001 chr3L_11470001 RAL-440 1083 chr3L 11548842 11548878 chr3L 11548935 11548971 13 98 3.0 2.5 2.8 3.4 129 chr3L 11548842 intron Mob2 - chr3L 11548906 intron Mob2 - chr3L 11548971 intron Mob2 - chr3L_13_11545001 chr3L_11545001 RAL-440 1084 chr3L 11579550 11579571 chr3L 11579670 11579681 6 118 8.0 6.0 7.0 0.8 131 chr3L 11579550 intergenic CG43390 - chr3L 11579616 intergenic CG43390 - chr3L 11579681 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-440 1085 chr3L 11579572 11579583 chr3L 11579669 11579693 4 110 3.0 6.0 4.5 0.7 121 chr3L 11579572 intergenic CG43390 - chr3L 11579632 intergenic CG43390 - chr3L 11579693 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-440 1086 chr3L 11590737 11590769 chr3L 11590839 11590850 7 94 2.0 3.0 2.5 2.0 113 chr3L 11590737 intergenic CG33268 - chr3L 11590794 intergenic CG33268 - chr3L 11590850 intergenic CG33268 - chr3L_7_11590001 chr3L_11590001 RAL-440 1087 chr3L 11648496 11648512 chr3L 11648598 11648608 4 99 8.0 0.0 4.0 0.8 112 chr3L 11648496 intergenic RIOK1 -,CG7339 + chr3L 11648552 intergenic RIOK1 -,CG7339 + chr3L 11648608 intergenic RIOK1 -,CG7339 + chr3L_4_11645001 chr3L_11645001 RAL-440 1088 chr3L 11659416 11659444 chr3L 11659753 11659785 4 338 3.0 4.5 3.8 0.8 369 chr3L 11659416 intron CG32085 - chr3L 11659600 intron CG32085 - chr3L 11659785 intron CG32085 - chr3L_4_11655001 chr3L_11655001 RAL-440 1089 chr3L 11723071 11723114 chr3L 11727876 11727923 Doc 12 4808 4.0 3.0 3.5 2.7 4852 chr3L 11723071 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727923 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-440 1090 chr3L 11744003 11744032 chr3L 11744124 11744134 11 117 7.5 2.0 4.8 1.9 131 chr3L 11744003 exon CG6024 - chr3L 11744068 intron CG6024 - chr3L 11744134 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-440 1091 chr3L 11757915 11757938 chr3L 11758024 11758044 4 111 4.5 0.0 2.2 1.2 129 chr3L 11757915 intron CG6024 - chr3L 11757980 intron CG6024 - chr3L 11758044 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-440 1092 chr3L 7749471 7749471 chr3L 11777678 11777678 4 4028207 13.5 5.0 9.2 0.4 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-440 1093 chr3L 11777678 11777678 chr3L 12163305 12163305 5 385627 4.5 16.5 10.5 0.4 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_5_11970001 chr3L_11970001 RAL-440 1094 chr3L 11816801 11816812 chr3L 11816890 11816924 6 102 5.0 5.5 5.2 1.0 123 chr3L 11816801 3` UTR CG5946 - chr3L 11816862 3` UTR CG5946 - chr3L 11816924 3` UTR CG5946 - chr3L_6_11815001 chr3L_11815001 RAL-440 1095 chr3L 11822546 11822584 chr3L 11822630 11822680 12 86 1.5 3.5 2.5 3.4 134 chr3L 11822546 intergenic CG5946 -,CG11597 -,RpL10Ab +,snoRNA:Psi18S-920 + chr3L 11822613 intergenic RpL10Ab +,CG5946 -,CG11597 -,snoRNA:Psi18S-920 + chr3L 11822680 intergenic RpL10Ab +,snoRNA:Psi18S-920 +,CG5946 -,CG11597 - chr3L_12_11820001 chr3L_11820001 RAL-440 1096 chr3L 11849323 11849355 chr3L 11849443 11849471 7 116 3.0 2.5 2.8 1.8 148 chr3L 11849323 intergenic not near genes chr3L 11849397 intergenic not near genes chr3L 11849471 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-440 1097 chr3L 11872240 11872261 chr3L 11872343 11872345 4 94 5.0 4.0 4.5 0.7 105 chr3L 11872240 intron CG44837 - chr3L 11872292 intron CG44837 - chr3L 11872345 intron CG44837 - chr3L_4_11870001 chr3L_11870001 RAL-440 1098 chr3L 11887246 11887288 chr3L 11887357 11887386 11 109 3.0 1.0 2.0 3.7 140 chr3L 11887246 intron CG44837 - chr3L 11887316 intron,3` UTR CG44837 -,CG5897 - chr3L 11887386 intron,3` UTR CG44837 -,CG5897 - chr3L_11_11885001 chr3L_11885001 RAL-440 1099 chr3L 11902481 11902506 chr3L 11902550 11902602 7 83 1.5 3.0 2.2 2.2 121 chr3L 11902481 intron CG44837 - chr3L 11902542 intron CG44837 - chr3L 11902602 intron CG44837 - chr3L_7_11900001 chr3L_11900001 RAL-440 1100 chr3L 11905109 11905162 chr3L 11905206 11905253 18 91 4.5 2.0 3.2 4.3 144 chr3L 11905109 intron CG44837 - chr3L 11905181 intron CG44837 - chr3L 11905253 intron CG44837 - chr3L_18_11905001 chr3L_11905001 RAL-440 1101 chr3L 11943479 11943519 chr3L 11943596 11943632 9 111 2.5 1.0 1.8 3.2 153 chr3L 11943479 3` UTR Rpt4R + chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943632 intergenic CG5883 -,Rpt4R + chr3L_9_11940001 chr3L_11940001 RAL-440 1102 chr3L 12013903 12013937 chr3L 12014006 12014036 10 98 2.5 2.0 2.2 3.1 133 chr3L 12013903 intron rols - chr3L 12013970 intron rols - chr3L 12014036 intron rols - chr3L_10_12010001 chr3L_12010001 RAL-440 1103 chr3L 12052691 12052735 chr3L 12052792 12052842 11 102 5.5 0.0 2.8 2.9 151 chr3L 12052691 intron rols - chr3L 12052766 intron rols - chr3L 12052842 intron rols - chr3L_11_12050001 chr3L_12050001 RAL-440 1104 chr3L 12067074 12067081 chr3L 12067173 12067176 4 98 0.0 0.0 0.0 4.0 102 chr3L 12067074 intergenic Sema-5c - chr3L 12067125 intergenic Sema-5c - chr3L 12067176 intergenic Sema-5c - chr3L_4_12065001 chr3L_12065001 RAL-440 1105 chr3L 12075406 12075438 chr3L 12075515 12075538 7 104 9.5 0.0 4.8 1.2 132 chr3L 12075406 intron Sema-5c - chr3L 12075472 intron Sema-5c - chr3L 12075538 intron Sema-5c - chr3L_7_12075001 chr3L_12075001 RAL-440 1106 chr3L 12106253 12106297 chr3L 12106361 12106392 5 104 2.5 4.5 3.5 1.1 139 chr3L 12106253 intergenic not near genes chr3L 12106322 intergenic not near genes chr3L 12106392 intergenic not near genes chr3L_5_12105001 chr3L_12105001 RAL-440 1107 chr3L 12158491 12158524 chr3L 12158716 12158765 26 232 24.0 37.0 30.5 0.8 274 chr3L 12158491 intron CG9760 - chr3L 12158628 intron CG9760 - chr3L 12158765 intron CG9760 - chr3L_26_12155001 chr3L_12155001 RAL-440 1108 chr3L 12158776 12158829 chr3L 12160240 12160280 8 1466 106.0 64.5 85.2 0.1 1504 chr3L 12158776 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160280 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-440 1109 chr3L 12156429 12156456 chr3L 12160314 12160347 16 3885 29.0 40.5 34.8 0.4 3918 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158388 intron CG9760 - chr3L 12160347 intron CG9760 - chr3L_16_12155001 chr3L_12155001 RAL-440 1110 chr3L 12170790 12170815 chr3L 12170878 12170916 4 96 1.0 4.0 2.5 1.1 126 chr3L 12170790 intron Rh7 - chr3L 12170853 intron Rh7 - chr3L 12170916 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-440 1111 chr3L 12204371 12204419 chr3L 12204479 12204530 10 108 2.5 3.5 3.0 2.5 159 chr3L 12204371 3` UTR CG5626 - chr3L 12204450 intron CG5626 - chr3L 12204530 intron CG5626 - chr3L_10_12200001 chr3L_12200001 RAL-440 1112 chr3L 12231379 12231411 chr3L 12231661 12231690 10 287 37.0 33.0 35.0 0.3 311 chr3L 12231379 intron app - chr3L 12231534 intron app - chr3L 12231690 intron app - chr3L_10_12230001 chr3L_12230001 RAL-440 1113 chr3L 12231377 12231379 chr3L 12231691 12231703 5 306 30.0 28.0 29.0 0.2 326 chr3L 12231377 intron app - chr3L 12231540 intron app - chr3L 12231703 intron app - chr3L_5_12230001 chr3L_12230001 RAL-440 1114 chr3L 12319740 12319766 chr3L 12319888 12319910 4 148 4.5 6.0 5.2 0.6 170 chr3L 12319740 intergenic not near genes chr3L 12319825 intergenic not near genes chr3L 12319910 intergenic not near genes chr3L_4_12315001 chr3L_12315001 RAL-440 1115 chr3L 12353933 12353950 chr3L 12354017 12354052 7 96 1.5 4.5 3.0 1.8 119 chr3L 12353933 intergenic not near genes chr3L 12353992 intergenic not near genes chr3L 12354052 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-440 1116 chr3L 12369518 12369568 chr3L 12369625 12369675 14 104 4.5 3.5 4.0 2.8 157 chr3L 12369518 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369675 intron Ncc69 - chr3L_14_12365001 chr3L_12365001 RAL-440 1117 chr3L 12491705 12491735 chr3L 12491792 12491823 4 86 0.0 2.5 1.2 1.8 118 chr3L 12491705 intergenic CG10657 -,CR45682 + chr3L 12491764 intergenic CG10657 -,CR45682 + chr3L 12491823 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-440 1118 chr3L 12610983 12611022 chr3L 12611247 12611288 6 263 0.5 0.5 0.5 4.0 305 chr3L 12610983 intron caup + chr3L 12611136 intron caup + chr3L 12611288 intron caup + chr3L_6_12610001 chr3L_12610001 RAL-440 1119 chr3L 12614592 12614599 chr3L 12614742 12614757 6 155 0.0 3.5 1.8 2.1 165 chr3L 12614592 intron caup + chr3L 12614674 intron caup + chr3L 12614757 intron caup + chr3L_6_12610001 chr3L_12610001 RAL-440 1120 chr3L 12626151 12626185 chr3L 12626280 12626302 9 121 2.5 0.0 1.2 4.1 151 chr3L 12626151 intergenic not near genes chr3L 12626226 intergenic not near genes chr3L 12626302 intergenic not near genes chr3L_9_12625001 chr3L_12625001 RAL-440 1121 chr3L 12647949 12647975 chr3L 12648033 12648065 6 85 1.5 1.5 1.5 2.4 116 chr3L 12647949 5` UTR CR32111 + chr3L 12648007 5` UTR CR32111 + chr3L 12648065 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-440 1122 chr3L 12657344 12657379 chr3L 12657442 12657463 10 92 5.0 4.0 4.5 1.8 119 chr3L 12657344 intergenic not near genes chr3L 12657404 intergenic not near genes chr3L 12657463 intergenic not near genes chr3L_10_12655001 chr3L_12655001 RAL-440 1123 chr3L 12659271 12659294 chr3L 12661214 12661240 7 1938 13.5 25.5 19.5 0.3 1969 chr3L 12659271 5` UTR CR44553 + chr3L 12660256 intergenic CR44553 + chr3L 12661240 intergenic not near genes chr3L_7_12660001 chr3L_12660001 RAL-440 1124 chr3L 12706624 12706655 chr3L 12706771 12706782 6 141 3.0 4.0 3.5 1.3 158 chr3L 12706624 intron mirr + chr3L 12706703 intron mirr + chr3L 12706782 intron mirr + chr3L_6_12705001 chr3L_12705001 RAL-440 1125 chr3L 12743265 12743309 chr3L 12743353 12743404 7 92 1.5 0.0 0.8 3.9 139 chr3L 12743265 intron CG32112 + chr3L 12743334 intron CG32112 + chr3L 12743404 intron CG32112 + chr3L_7_12740001 chr3L_12740001 RAL-440 1126 chr3L 12801973 12802008 chr3L 12802054 12802101 6 81 3.5 3.0 3.2 1.4 128 chr3L 12801973 intron Atg1 - chr3L 12802037 intron Atg1 - chr3L 12802101 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-440 1127 chr3L 12874928 12874956 chr3L 12877217 12877268 jockey 7 2300 2.5 3.5 3.0 1.8 2340 chr3L 12874928 intergenic not near genes chr3L 12876098 intergenic not near genes chr3L 12877268 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-440 1128 chr3L 12894796 12894814 chr3L 12894881 12894894 4 88 5.5 4.5 5.0 0.7 98 chr3L 12894796 intergenic CG14118 + chr3L 12894845 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-440 1129 chr3L 12919257 12919303 chr3L 12924761 12924770 Rt1c 6 5491 6.5 4.5 5.5 0.9 5513 chr3L 12919257 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-440 1130 chr3L 12929724 12929734 chr3L 12930050 12930063 4 325 0.0 2.5 1.2 1.8 339 chr3L 12929724 intergenic not near genes chr3L 12929894 intergenic not near genes chr3L 12930063 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-440 1131 chr3L 12955111 12955163 chr3L 12955207 12955251 14 88 6.0 4.0 5.0 2.3 140 chr3L 12955111 intergenic CG10752 - chr3L 12955181 intergenic not near genes chr3L 12955251 intergenic not near genes chr3L_14_12955001 chr3L_12955001 RAL-440 1132 chr3L 12957783 12957817 chr3L 12962266 12962309 copia 17 4491 4.0 4.0 4.0 3.4 4526 chr3L 12957783 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962309 intergenic not near genes chr3L_17_12960001 chr3L_12960001 RAL-440 1133 chr3L 12966122 12966140 chr3L 12966228 12966239 5 102 7.5 3.0 5.2 0.8 117 chr3L 12966122 intron Or69a - chr3L 12966180 intron Or69a - chr3L 12966239 intron Or69a - chr3L_5_12965001 chr3L_12965001 RAL-440 1134 chr3L 12966148 12966158 chr3L 12966223 12966266 6 88 4.5 3.0 3.8 1.2 118 chr3L 12966148 intron Or69a - chr3L 12966207 intron Or69a - chr3L 12966266 intron Or69a - chr3L_6_12965001 chr3L_12965001 RAL-440 1135 chr3L 12977726 12977766 chr3L 12977847 12977879 15 116 6.5 6.0 6.2 2.1 153 chr3L 12977726 intergenic not near genes chr3L 12977802 intergenic not near genes chr3L 12977879 intergenic not near genes chr3L_15_12975001 chr3L_12975001 RAL-440 1136 chr3L 13007686 13007727 chr3L 13007772 13007799 8 86 2.0 2.0 2.0 2.7 113 chr3L 13007686 exon CG11263 + chr3L 13007742 3` UTR CG11263 + chr3L 13007799 3` UTR CG11263 + chr3L_8_13005001 chr3L_13005001 RAL-440 1137 chr3L 13067538 13067569 chr3L 13067631 13067648 7 91 3.0 0.0 1.5 2.8 110 chr3L 13067538 intergenic not near genes chr3L 13067593 intergenic not near genes chr3L 13067648 intergenic not near genes chr3L_7_13065001 chr3L_13065001 RAL-440 1138 chr3L 13142148 13142154 chr3L 13142272 13142286 4 128 3.5 5.5 4.5 0.7 138 chr3L 13142148 intergenic not near genes chr3L 13142217 intergenic not near genes chr3L 13142286 intergenic not near genes chr3L_4_13140001 chr3L_13140001 RAL-440 1139 chr3L 13142155 13142175 chr3L 13142271 13142295 8 124 1.5 5.5 3.5 1.8 140 chr3L 13142155 intergenic not near genes chr3L 13142225 intergenic not near genes chr3L 13142295 intergenic not near genes chr3L_8_13140001 chr3L_13140001 RAL-440 1140 chr3L 13188084 13188098 chr3L 13188288 13188311 4 206 1.5 3.5 2.5 1.1 227 chr3L 13188084 intergenic not near genes chr3L 13188198 intergenic not near genes chr3L 13188311 intergenic not near genes chr3L_4_13185001 chr3L_13185001 RAL-440 1141 chr3L 13206239 13206256 chr3L 13206322 13206341 5 85 4.0 5.0 4.5 0.9 102 chr3L 13206239 intergenic not near genes chr3L 13206290 intergenic not near genes chr3L 13206341 intergenic not near genes chr3L_5_13205001 chr3L_13205001 RAL-440 1142 chr3L 13254712 13254721 chr3L 13254847 13254857 4 136 11.5 7.0 9.2 0.4 145 chr3L 13254712 intron caps + chr3L 13254784 intron caps + chr3L 13254857 intron caps + chr3L_4_13250001 chr3L_13250001 RAL-440 1143 chr3L 13254725 13254757 chr3L 13254844 13254876 8 128 5.5 6.5 6.0 1.1 151 chr3L 13254725 intron caps + chr3L 13254800 intron caps + chr3L 13254876 intron caps + chr3L_8_13250001 chr3L_13250001 RAL-440 1144 chr3L 13374241 13374271 chr3L 13374332 13374380 13 100 3.5 5.0 4.2 2.5 139 chr3L 13374241 intergenic not near genes chr3L 13374310 intergenic not near genes chr3L 13374380 intergenic not near genes chr3L_13_13370001 chr3L_13370001 RAL-440 1145 chr3L 13677528 13677554 chr3L 13677613 13677650 6 89 3.5 4.0 3.8 1.2 122 chr3L 13677528 intron bru-3 - chr3L 13677589 intron bru-3 - chr3L 13677650 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-440 1146 chr3L 13804533 13804577 chr3L 13822839 13822855 roo 12 18299 2.5 6.5 4.5 2.2 18322 chr3L 13804533 intergenic not near genes chr3L 13813694 intergenic not near genes chr3L 13822855 intergenic not near genes chr3L_12_13810001 chr3L_13810001 RAL-440 1147 chr3L 13865612 13865644 chr3L 13865709 13865744 6 96 6.5 2.5 4.5 1.1 132 chr3L 13865612 intron CG8745 - chr3L 13865678 intron CG8745 - chr3L 13865744 intron CG8745 - chr3L_6_13865001 chr3L_13865001 RAL-440 1148 chr3L 13901580 13901600 chr3L 13901668 13901697 6 91 3.5 3.5 3.5 1.3 117 chr3L 13901580 intron dysc - chr3L 13901638 intron dysc - chr3L 13901697 5` UTR dysc - chr3L_6_13900001 chr3L_13900001 RAL-440 1149 chr3L 14059215 14059250 chr3L 14059338 14059363 5 123 1.0 6.0 3.5 1.1 148 chr3L 14059215 intron CG32138 + chr3L 14059289 intron CG32138 + chr3L 14059363 intron CG32138 + chr3L_5_14055001 chr3L_14055001 RAL-440 1150 chr3L 14107256 14107287 chr3L 14107338 14107367 7 90 4.5 0.5 2.5 2.0 111 chr3L 14107256 intron Sox21a - chr3L 14107312 intron Sox21a - chr3L 14107367 intron Sox21a - chr3L_7_14105001 chr3L_14105001 RAL-440 1151 chr3L 14144131 14144151 chr3L 14144214 14144243 13 89 3.5 1.0 2.2 4.1 112 chr3L 14144131 intergenic not near genes chr3L 14144187 intergenic not near genes chr3L 14144243 intergenic not near genes chr3L_13_14140001 chr3L_14140001 RAL-440 1152 chr3L 14196419 14196445 chr3L 14196508 14196538 7 95 4.0 5.5 4.8 1.2 119 chr3L 14196419 intron nuf + chr3L 14196478 intron nuf + chr3L 14196538 intron nuf + chr3L_7_14195001 chr3L_14195001 RAL-440 1153 chr3L 14222818 14222834 chr3L 14222906 14222941 9 99 2.5 2.0 2.2 2.8 123 chr3L 14222818 intron nuf + chr3L 14222880 intron nuf + chr3L 14222941 intron nuf + chr3L_9_14220001 chr3L_14220001 RAL-440 1154 chr3L 14245572 14245586 chr3L 14245674 14245700 1360 13 104 5.0 3.0 4.0 2.6 128 chr3L 14245572 3` UTR CR44561 - chr3L 14245636 3` UTR CR44561 - chr3L 14245700 intergenic CR44561 -,CR44560 + chr3L_13_14245001 chr3L_14245001 RAL-440 1155 chr3L 14267367 14267388 chr3L 14271811 14271849 F-element 5 4450 2.5 4.5 3.5 1.1 4482 chr3L 14267367 intergenic not near genes chr3L 14269608 intergenic not near genes chr3L 14271849 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-440 1156 chr3L 14282590 14282604 chr3L 14282666 14282703 6 83 3.0 4.0 3.5 1.3 113 chr3L 14282590 intron fz + chr3L 14282646 intron fz + chr3L 14282703 intron fz + chr3L_6_14280001 chr3L_14280001 RAL-440 1157 chr3L 14295978 14296014 chr3L 14296470 14296504 roo 8 492 3.0 4.5 3.8 1.7 526 chr3L 14295978 intron fz + chr3L 14296241 intron fz + chr3L 14296504 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-440 1158 chr3L 14302979 14303009 chr3L 14303075 14303099 5 90 3.5 1.0 2.2 1.6 120 chr3L 14302979 intron fz + chr3L 14303039 intron fz + chr3L 14303099 intron fz + chr3L_5_14300001 chr3L_14300001 RAL-440 1159 chr3L 14356520 14356553 chr3L 14356604 14356627 18 86 4.0 4.5 4.2 3.5 107 chr3L 14356520 intron fz + chr3L 14356574 intron fz + chr3L 14356627 intron fz + chr3L_18_14355001 chr3L_14355001 RAL-440 1160 chr3L 14440758 14440766 chr3L 14440856 14440864 4 102 1.0 2.0 1.5 1.6 106 chr3L 14440758 intron bbg - chr3L 14440811 intron bbg - chr3L 14440864 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-440 1161 chr3L 14453697 14453723 chr3L 14453785 14453821 4 94 0.0 2.5 1.2 1.8 124 chr3L 14453697 intron bbg - chr3L 14453759 intron bbg - chr3L 14453821 intron bbg - chr3L_4_14450001 chr3L_14450001 RAL-440 1162 chr3L 14458926 14458958 chr3L 14459020 14459055 4 92 2.0 1.5 1.8 1.4 129 chr3L 14458926 intron bbg - chr3L 14458990 intron bbg - chr3L 14459055 intron bbg - chr3L_4_14455001 chr3L_14455001 RAL-440 1163 chr3L 14468429 14468478 chr3L 14473654 14473700 copia 7 5223 3.0 1.0 2.0 2.3 5271 chr3L 14468429 intron bbg - chr3L 14471064 intron bbg - chr3L 14473700 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-440 1164 chr3L 14487608 14487627 chr3L 14487695 14487697 4 80 4.5 0.0 2.2 1.2 89 chr3L 14487608 intron bbg - chr3L 14487652 intron bbg - chr3L 14487697 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-440 1165 chr3L 14533876 14533917 chr3L 14533976 14533999 17 91 4.5 8.0 6.2 2.4 123 chr3L 14533876 intron bbg - chr3L 14533938 intron bbg - chr3L 14533999 intron bbg - chr3L_17_14530001 chr3L_14530001 RAL-440 1166 chr3L 14533923 14533929 chr3L 14533975 14534011 6 76 3.5 8.0 5.8 0.9 88 chr3L 14533923 intron bbg - chr3L 14533967 intron bbg - chr3L 14534011 intron bbg - chr3L_6_14530001 chr3L_14530001 RAL-440 1167 chr3L 14565739 14565777 chr3L 14565842 14565888 6 101 3.0 1.0 2.0 2.0 149 chr3L 14565739 intergenic not near genes chr3L 14565814 intergenic not near genes chr3L 14565888 intergenic not near genes chr3L_6_14565001 chr3L_14565001 RAL-440 1168 chr3L 14633775 14633792 chr3L 14633883 14633907 4 112 2.0 2.0 2.0 1.3 132 chr3L 14633775 intron dlp + chr3L 14633841 intron dlp + chr3L 14633907 intron dlp + chr3L_4_14630001 chr3L_14630001 RAL-440 1169 chr3L 14809178 14809218 chr3L 14809274 14809315 10 93 1.5 4.0 2.8 2.6 137 chr3L 14809178 intron CG17839 + chr3L 14809246 intron CG17839 + chr3L 14809315 intron CG17839 + chr3L_10_14805001 chr3L_14805001 RAL-440 1170 chr3L 14924946 14924964 chr3L 14925085 14925116 4 150 4.0 2.0 3.0 1.0 170 chr3L 14924946 intron DCX-EMAP + chr3L 14925031 intron DCX-EMAP + chr3L 14925116 intron DCX-EMAP + chr3L_4_14925001 chr3L_14925001 RAL-440 1171 chr3L 14933434 14933449 chr3L 14933528 14933549 4 99 4.0 1.5 2.8 1.1 115 chr3L 14933434 intron DCX-EMAP + chr3L 14933492 intron DCX-EMAP + chr3L 14933549 intron DCX-EMAP + chr3L_4_14930001 chr3L_14930001 RAL-440 1172 chr3L 14954357 14954394 chr3L 14956034 14956083 transib2 4 1681 2.0 1.0 1.5 1.6 1726 chr3L 14954357 intergenic not near genes chr3L 14955220 intergenic not near genes chr3L 14956083 intergenic not near genes chr3L_4_14955001 chr3L_14955001 RAL-440 1173 chr3L 15048113 15048137 chr3L 15048458 15048493 6 350 14.5 29.5 22.0 0.3 380 chr3L 15048113 intron Sytbeta - chr3L 15048303 intron Sytbeta - chr3L 15048493 intron Sytbeta - chr3L_6_15045001 chr3L_15045001 RAL-440 1174 chr3L 15053397 15053449 chr3L 15053756 15053807 6 356 4.0 5.0 4.5 1.1 410 chr3L 15053397 intron Sytbeta - chr3L 15053602 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053807 intron,3` UTR Sytbeta -,CG18649 - chr3L_6_15050001 chr3L_15050001 RAL-440 1175 chr3L 15085054 15085082 chr3L 15086215 15086267 1360 6 1167 1.5 3.5 2.5 1.7 1213 chr3L 15085054 intron cp309 - chr3L 15085660 intron cp309 - chr3L 15086267 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-440 1176 chr3L 15257413 15257440 chr3L 15257646 15257670 7 227 6.5 2.0 4.2 1.3 257 chr3L 15257413 intergenic not near genes chr3L 15257542 intergenic not near genes chr3L 15257670 intergenic not near genes chr3L_7_15255001 chr3L_15255001 RAL-440 1177 chr3L 15295763 15295801 chr3L 15298620 15298636 gypsy5 4 2850 0.5 2.0 1.2 1.8 2873 chr3L 15295763 intergenic not near genes chr3L 15297200 intergenic not near genes chr3L 15298636 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-440 1178 chr3L 15327211 15327252 chr3L 15327295 15327333 7 81 3.5 5.0 4.2 1.3 122 chr3L 15327211 intergenic not near genes chr3L 15327272 intergenic not near genes chr3L 15327333 intergenic not near genes chr3L_7_15325001 chr3L_15325001 RAL-440 1179 chr3L 15333136 15333164 chr3L 15333220 15333265 4 90 1.5 5.0 3.2 1.0 129 chr3L 15333136 intergenic CR43247 + chr3L 15333200 intergenic CR43247 + chr3L 15333265 intergenic CR43247 + chr3L_4_15330001 chr3L_15330001 RAL-440 1180 chr3L 15384941 15384984 chr3L 15385089 15385129 13 141 6.0 4.5 5.2 2.1 188 chr3L 15384941 intergenic not near genes chr3L 15385035 intergenic not near genes chr3L 15385129 intergenic not near genes chr3L_13_15385001 chr3L_15385001 RAL-440 1181 chr3L 15406045 15406055 chr3L 15406122 15406135 6 84 1.5 3.5 2.5 1.7 90 chr3L 15406045 intergenic not near genes chr3L 15406090 intergenic not near genes chr3L 15406135 intergenic not near genes chr3L_6_15405001 chr3L_15405001 RAL-440 1182 chr3L 15423740 15423769 chr3L 15426604 15426619 opus 5 2861 4.0 3.5 3.8 1.0 2879 chr3L 15423740 intergenic not near genes chr3L 15425180 intergenic not near genes chr3L 15426619 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-440 1183 chr3L 15466040 15466134 chr3L 15466120 15466244 4 102 0.0 0.0 0.0 4.0 204 chr3L 15466040 intergenic not near genes chr3L 15466142 intergenic not near genes chr3L 15466244 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-440 1184 chr3L 15466510 15466553 chr3L 15466612 15466652 4 89 3.0 2.0 2.5 1.1 142 chr3L 15466510 intergenic not near genes chr3L 15466581 intergenic not near genes chr3L 15466652 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-440 1185 chr3L 15472631 15472671 chr3L 15472726 15472753 6 88 9.5 12.0 10.8 0.5 122 chr3L 15472631 exon CG7804 - chr3L 15472692 exon CG7804 - chr3L 15472753 exon CG7804 - chr3L_6_15470001 chr3L_15470001 RAL-440 1186 chr3L 15541598 15541650 chr3L 15541709 15541761 6 110 4.0 2.0 3.0 1.5 163 chr3L 15541598 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541761 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-440 1187 chr3L 15691397 15691406 chr3L 15691499 15691502 4 100 0.0 3.0 1.5 1.6 105 chr3L 15691397 intron CG34451 - chr3L 15691450 intron CG34451 - chr3L 15691502 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-440 1188 chr3L 15691408 15691446 chr3L 15691496 15691505 7 76 0.0 2.5 1.2 3.2 97 chr3L 15691408 intron CG34451 - chr3L 15691456 intron CG34451 - chr3L 15691505 intron CG34451 - chr3L_7_15690001 chr3L_15690001 RAL-440 1189 chr3L 15756873 15756909 chr3L 15756961 15756998 5 84 5.0 0.0 2.5 1.4 125 chr3L 15756873 intergenic not near genes chr3L 15756936 intergenic not near genes chr3L 15756998 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-440 1190 chr3L 15784558 15784590 chr3L 15784675 15784692 6 112 2.5 1.0 1.8 2.1 134 chr3L 15784558 intergenic not near genes chr3L 15784625 intergenic not near genes chr3L 15784692 intergenic not near genes chr3L_6_15780001 chr3L_15780001 RAL-440 1191 chr3L 15871581 15871608 chr3L 15871682 15871701 7 100 5.0 2.5 3.8 1.5 120 chr3L 15871581 intron pHCl - chr3L 15871641 intron pHCl - chr3L 15871701 intron pHCl - chr3L_7_15870001 chr3L_15870001 RAL-440 1192 chr3L 15916517 15916565 chr3L 15916615 15916653 4 92 0.0 1.5 0.8 2.2 136 chr3L 15916517 intron sff - chr3L 15916585 intron sff - chr3L 15916653 intron sff - chr3L_4_15915001 chr3L_15915001 RAL-440 1193 chr3L 15929181 15929226 chr3L 15938342 15938393 roo 6 9163 4.0 2.0 3.0 1.5 9212 chr3L 15929181 intron Pka-C3 - chr3L 15933787 intron Pka-C3 - chr3L 15938393 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 RAL-440 1194 chr3L 15944575 15944605 chr3L 15944660 15944688 8 84 7.0 1.5 4.2 1.5 113 chr3L 15944575 intron Pka-C3 - chr3L 15944632 intron Pka-C3 - chr3L 15944688 intron Pka-C3 - chr3L_8_15940001 chr3L_15940001 RAL-440 1195 chr3L 15989227 15989271 chr3L 15989323 15989362 11 93 0.5 2.0 1.2 5.0 135 chr3L 15989227 intron Hip14 + chr3L 15989294 intron Hip14 + chr3L 15989362 intron Hip14 + chr3L_11_15985001 chr3L_15985001 RAL-440 1196 chr3L 16070721 16070762 chr3L 16070818 16070856 10 94 3.5 3.5 3.5 2.2 135 chr3L 16070721 intron Mbs + chr3L 16070788 intron Mbs + chr3L 16070856 exon Mbs + chr3L_10_16070001 chr3L_16070001 RAL-440 1197 chr3L 16159252 16159261 chr3L 16159345 16159350 4 92 9.0 4.0 6.5 0.5 98 chr3L 16159252 intron CG5151 - chr3L 16159301 intron CG5151 - chr3L 16159350 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-440 1198 chr3L 16159265 16159300 chr3L 16159343 16159357 17 88 4.5 3.5 4.0 3.4 92 chr3L 16159265 intron CG5151 - chr3L 16159311 intron CG5151 - chr3L 16159357 intron CG5151 - chr3L_17_16155001 chr3L_16155001 RAL-440 1199 chr3L 16162590 16162624 chr3L 16162682 16162723 12 95 2.5 2.5 2.5 3.4 133 chr3L 16162590 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162723 intron CG5151 - chr3L_12_16160001 chr3L_16160001 RAL-440 1200 chr3L 16184094 16184135 chr3L 16188927 16188950 X-element 12 4831 4.5 4.0 4.2 2.3 4856 chr3L 16184094 intergenic not near genes chr3L 16186522 intergenic not near genes chr3L 16188950 intergenic not near genes chr3L_12_16185001 chr3L_16185001 RAL-440 1201 chr3L 16212805 16212843 chr3L 16212901 16212953 10 107 2.0 1.5 1.8 3.6 148 chr3L 16212805 intergenic CG13073 - chr3L 16212879 intergenic CG13073 - chr3L 16212953 intergenic CG13073 - chr3L_10_16210001 chr3L_16210001 RAL-440 1202 chr3L 16252100 16252104 chr3L 16252231 16252236 4 136 4.0 5.0 4.5 0.7 136 chr3L 16252100 5` UTR CG13055 - chr3L 16252168 5` UTR CG13055 - chr3L 16252236 5` UTR CG13055 - chr3L_4_16250001 chr3L_16250001 RAL-440 1203 chr3L 16279065 16279103 chr3L 16279166 16279204 7 100 2.0 2.5 2.2 2.2 139 chr3L 16279065 exon CG13050 - chr3L 16279134 intron CG13050 - chr3L 16279204 exon CG13050 - chr3L_7_16275001 chr3L_16275001 RAL-440 1204 chr3L 16322808 16322848 chr3L 16322918 16322942 11 98 5.0 4.0 4.5 2.0 134 chr3L 16322808 intergenic not near genes chr3L 16322875 intergenic not near genes chr3L 16322942 intergenic not near genes chr3L_11_16320001 chr3L_16320001 RAL-440 1205 chr3L 16427074 16427120 chr3L 16427175 16427222 8 96 6.0 5.5 5.8 1.2 148 chr3L 16427074 intron,intron CG33158 +,dsx-c73A - chr3L 16427148 intron,intron CG33158 +,dsx-c73A - chr3L 16427222 intron,intron CG33158 +,dsx-c73A - chr3L_8_16425001 chr3L_16425001 RAL-440 1206 chr3L 16437046 16437104 chr3L 16437145 16437205 13 99 3.0 0.5 1.8 4.6 159 chr3L 16437046 intron,intron CG33158 +,dsx-c73A - chr3L 16437126 intron,intron CG33158 +,dsx-c73A - chr3L 16437205 intron,intron CG33158 +,dsx-c73A - chr3L_13_16435001 chr3L_16435001 RAL-440 1207 chr3L 16450002 16450051 chr3L 16450107 16450156 8 100 0.0 2.5 1.2 3.6 154 chr3L 16450002 intron,intron CG33158 +,dsx-c73A - chr3L 16450079 intron,intron CG33158 +,dsx-c73A - chr3L 16450156 intron,exon CG33158 +,dsx-c73A - chr3L_8_16450001 chr3L_16450001 RAL-440 1208 chr3L 16457530 16457532 chr3L 16457627 16457631 4 100 8.5 7.0 7.8 0.5 101 chr3L 16457530 intron CG33158 + chr3L 16457580 intron CG33158 + chr3L 16457631 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-440 1209 chr3L 16493959 16493980 chr3L 16494496 16494499 jockey 6 534 10.5 6.5 8.5 0.6 540 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494229 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494499 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-440 1210 chr3L 16493984 16494012 chr3L 16494493 16494523 jockey 13 515 3.5 6.5 5.0 2.2 539 chr3L 16493984 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494254 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494523 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_13_16490001 chr3L_16490001 RAL-440 1211 chr3L 16509376 16509423 chr3L 16509544 16509586 12 165 4.0 1.5 2.8 3.2 210 chr3L 16509376 intron CG43373 - chr3L 16509481 intron CG43373 - chr3L 16509586 intron CG43373 - chr3L_12_16505001 chr3L_16505001 RAL-440 1212 chr3L 16515313 16515342 chr3L 16515415 16515438 9 99 3.0 3.5 3.2 2.1 125 chr3L 16515313 intron CG43373 - chr3L 16515376 intron CG43373 - chr3L 16515438 intron CG43373 - chr3L_9_16515001 chr3L_16515001 RAL-440 1213 chr3L 16610666 16610706 chr3L 16610771 16610800 8 97 3.0 4.5 3.8 1.7 134 chr3L 16610666 3` UTR Su(P) - chr3L 16610733 3` UTR Su(P) - chr3L 16610800 exon Su(P) - chr3L_8_16610001 chr3L_16610001 RAL-440 1214 chr3L 16616512 16616542 chr3L 16621845 16621882 297 9 5333 2.5 3.5 3.0 2.2 5370 chr3L 16616512 3` UTR Abl - chr3L 16619197 3` UTR Abl - chr3L 16621882 3` UTR Abl - chr3L_9_16615001 chr3L_16615001 RAL-440 1215 chr3L 16643654 16643681 chr3L 16643732 16643783 14 89 3.5 6.5 5.0 2.3 129 chr3L 16643654 intron Abl - chr3L 16643718 intron Abl - chr3L 16643783 intron Abl - chr3L_14_16640001 chr3L_16640001 RAL-440 1216 chr3L 16746807 16746845 chr3L 16746919 16746932 4 99 6.0 2.5 4.2 0.8 125 chr3L 16746807 intergenic not near genes chr3L 16746870 intergenic not near genes chr3L 16746932 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-440 1217 chr3L 16772489 16772508 chr3L 16772585 16772618 8 106 5.0 3.5 4.2 1.5 129 chr3L 16772489 intron Nrt + chr3L 16772554 intron Nrt + chr3L 16772618 intron Nrt + chr3L_8_16770001 chr3L_16770001 RAL-440 1218 chr3L 16796391 16796399 chr3L 16796496 16796497 5 104 9.5 2.5 6.0 0.7 106 chr3L 16796391 intron CG9674 - chr3L 16796444 intron CG9674 - chr3L 16796497 intron CG9674 - chr3L_5_16795001 chr3L_16795001 RAL-440 1219 chr3L 16796401 16796438 chr3L 16796492 16796538 4 96 4.5 2.0 3.2 1.0 137 chr3L 16796401 intron CG9674 - chr3L 16796470 intron CG9674 - chr3L 16796538 intron CG9674 - chr3L_4_16795001 chr3L_16795001 RAL-440 1220 chr3L 16802435 16802483 chr3L 16803618 16803650 11 1181 44.0 32.0 38.0 0.3 1215 chr3L 16802435 intron CG9674 - chr3L 16803042 intron CG9674 - chr3L 16803650 intron CG9674 - chr3L_11_16800001 chr3L_16800001 RAL-440 1221 chr3L 16817331 16817367 chr3L 16817426 16817458 17 101 0.0 6.5 3.2 4.0 127 chr3L 16817331 intron,intron nudC +,CG13024 - chr3L 16817394 intron,intron nudC +,CG13024 - chr3L 16817458 intron,intron nudC +,CG13024 - chr3L_17_16815001 chr3L_16815001 RAL-440 1222 chr3L 16818739 16818771 chr3L 16818823 16818860 15 90 7.5 3.0 5.2 2.4 121 chr3L 16818739 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818860 intron,intron nudC +,CG13024 - chr3L_15_16815001 chr3L_16815001 RAL-440 1223 chr3L 16836896 16836941 chr3L 16837011 16837033 8 93 8.5 3.5 6.0 1.1 137 chr3L 16836896 intergenic not near genes chr3L 16836964 intergenic not near genes chr3L 16837033 intergenic not near genes chr3L_8_16835001 chr3L_16835001 RAL-440 1224 chr3L 16845006 16845042 chr3L 16845139 16845174 6 125 2.5 5.5 4.0 1.2 168 chr3L 16845006 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845174 intergenic CG9669 -,CG9715 + chr3L_6_16845001 chr3L_16845001 RAL-440 1225 chr3L 16867546 16867569 chr3L 16867632 16867666 6 87 1.0 6.0 3.5 1.3 120 chr3L 16867546 intron Lmpt + chr3L 16867606 intron Lmpt + chr3L 16867666 intron Lmpt + chr3L_6_16865001 chr3L_16865001 RAL-440 1226 chr3L 16870848 16870897 chr3L 16870956 16871008 6 104 0.5 0.0 0.2 5.0 160 chr3L 16870848 intron Lmpt + chr3L 16870928 intron Lmpt + chr3L 16871008 intron Lmpt + chr3L_6_16870001 chr3L_16870001 RAL-440 1227 chr3L 16873325 16873363 chr3L 16873450 16873476 9 121 7.0 4.0 5.5 1.4 151 chr3L 16873325 intron Lmpt + chr3L 16873400 intron Lmpt + chr3L 16873476 intron Lmpt + chr3L_9_16870001 chr3L_16870001 RAL-440 1228 chr3L 16911030 16911043 chr3L 16911128 16911148 4 102 6.0 1.5 3.8 0.8 118 chr3L 16911030 intron Lmpt + chr3L 16911089 intron Lmpt + chr3L 16911148 intron Lmpt + chr3L_4_16910001 chr3L_16910001 RAL-440 1229 chr3L 16945736 16945749 chr3L 16954883 16954892 roo 5 9148 4.0 9.5 6.8 0.6 9156 chr3L 16945736 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954892 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-440 1230 chr3L 17008451 17008473 chr3L 17008526 17008571 5 85 3.0 8.0 5.5 0.8 120 chr3L 17008451 intron CG3764 - chr3L 17008511 intron CG3764 - chr3L 17008571 intron CG3764 - chr3L_5_17005001 chr3L_17005001 RAL-440 1231 chr3L 17026786 17026819 chr3L 17026878 17026895 5 86 3.0 6.0 4.5 0.9 109 chr3L 17026786 exon Fit2 + chr3L 17026840 3` UTR Fit2 + chr3L 17026895 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-440 1232 chr3L 17034924 17034954 chr3L 17035128 17035156 G2 6 204 2.0 0.5 1.2 2.7 232 chr3L 17034924 intergenic not near genes chr3L 17035040 intergenic not near genes chr3L 17035156 intergenic not near genes chr3L_6_17035001 chr3L_17035001 RAL-440 1233 chr3L 17084986 17085029 chr3L 17094155 17094198 roo 12 9163 7.5 4.0 5.8 1.8 9212 chr3L 17084986 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094198 intron Rbp6 - chr3L_12_17085001 chr3L_17085001 RAL-440 1234 chr3L 17120641 17120680 chr3L 17120730 17120776 9 91 5.5 4.5 5.0 1.5 135 chr3L 17120641 intron Rbp6 - chr3L 17120708 intron Rbp6 - chr3L 17120776 intron Rbp6 - chr3L_9_17120001 chr3L_17120001 RAL-440 1235 chr3L 17272237 17272245 chr3L 17272390 17272398 4 151 1.5 3.5 2.5 1.1 161 chr3L 17272237 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272398 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-440 1236 chr3L 17272248 17272266 chr3L 17272373 17272411 8 139 1.0 3.5 2.2 2.5 163 chr3L 17272248 intergenic not near genes chr3L 17272330 intergenic not near genes chr3L 17272411 intergenic not near genes chr3L_8_17270001 chr3L_17270001 RAL-440 1237 chr3L 17498084 17498111 chr3L 17498181 17498183 8 92 2.5 3.0 2.8 2.1 99 chr3L 17498084 intron Oatp74D + chr3L 17498134 intron Oatp74D + chr3L 17498183 intron Oatp74D + chr3L_8_17495001 chr3L_17495001 RAL-440 1238 chr3L 17510743 17510762 chr3L 17510838 17510857 5 95 5.0 5.0 5.0 0.8 114 chr3L 17510743 exon Oatp74D + chr3L 17510800 intron Oatp74D + chr3L 17510857 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-440 1239 chr3L 17516974 17517002 chr3L 17524536 17524559 412 7 7556 5.5 2.5 4.0 1.4 7585 chr3L 17516974 intron CG7564 + chr3L 17520766 intron CG7564 + chr3L 17524559 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-440 1240 chr3L 17547570 17547614 chr3L 17547680 17547716 13 108 2.5 2.5 2.5 3.7 146 chr3L 17547570 intron Jon74E - chr3L 17547643 intron Jon74E - chr3L 17547716 intron Jon74E - chr3L_13_17545001 chr3L_17545001 RAL-440 1241 chr3L 17659703 17659738 chr3L 17659800 17659834 6 92 4.5 1.5 3.0 1.5 131 chr3L 17659703 intergenic Crtc - chr3L 17659768 intergenic Crtc - chr3L 17659834 3` UTR Crtc - chr3L_6_17655001 chr3L_17655001 RAL-440 1242 chr3L 17730848 17730882 chr3L 17738184 17738209 mdg1 8 7337 2.0 3.0 2.5 2.3 7361 chr3L 17730848 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738209 intron Ccn + chr3L_8_17730001 chr3L_17730001 RAL-440 1243 chr3L 17743983 17744027 chr3L 17745764 17745799 7 1774 22.0 22.0 22.0 0.3 1816 chr3L 17743983 intron Ccn + chr3L 17744891 intron Ccn + chr3L 17745799 intron,exon Ccn +,CG6034 - chr3L_7_17740001 chr3L_17740001 RAL-440 1244 chr3L 17787668 17787690 chr3L 17787781 17787803 6 111 1.5 3.5 2.5 1.7 135 chr3L 17787668 intergenic not near genes chr3L 17787736 intergenic not near genes chr3L 17787803 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-440 1245 chr3L 17790176 17790450 chr3L 17790309 17790595 15 121 12.0 7.5 9.8 1.4 419 chr3L 17790176 intergenic not near genes chr3L 17790386 intergenic not near genes chr3L 17790595 intergenic CG42815 - chr3L_15_17790001 chr3L_17790001 RAL-440 1246 chr3L 17799795 17799842 chr3L 17801602 17801644 S-element 6 1802 2.5 3.0 2.8 1.6 1849 chr3L 17799795 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801644 intron NUCB1 - chr3L_6_17800001 chr3L_17800001 RAL-440 1247 chr3L 17837623 17837652 chr3L 17837718 17837744 6 93 1.5 2.5 2.0 2.0 121 chr3L 17837623 exon Grd + chr3L 17837684 intron Grd + chr3L 17837744 exon Grd + chr3L_6_17835001 chr3L_17835001 RAL-440 1248 chr3L 17870397 17870436 chr3L 17870724 17870771 5 334 33.0 33.0 33.0 0.1 374 chr3L 17870397 intergenic not near genes chr3L 17870584 intergenic not near genes chr3L 17870771 intergenic not near genes chr3L_5_17870001 chr3L_17870001 RAL-440 1249 chr3L 17896588 17896642 chr3L 17896685 17896731 14 91 4.0 4.5 4.2 2.7 143 chr3L 17896588 intergenic not near genes chr3L 17896660 intergenic not near genes chr3L 17896731 intergenic not near genes chr3L_14_17895001 chr3L_17895001 RAL-440 1250 chr3L 17918369 17918401 chr3L 17921181 17921220 opus 5 2813 2.0 1.5 1.8 1.8 2851 chr3L 17918369 intergenic not near genes chr3L 17919794 intergenic not near genes chr3L 17921220 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-440 1251 chr3L 18009844 18009879 chr3L 18009980 18010029 10 148 2.5 4.5 3.5 2.2 185 chr3L 18009844 intron Eip75B - chr3L 18009936 intron Eip75B - chr3L 18010029 intron Eip75B - chr3L_10_18005001 chr3L_18005001 RAL-440 1252 chr3L 18013958 18013979 chr3L 18014066 18014077 4 105 2.5 0.0 1.2 1.8 119 chr3L 18013958 intron Eip75B - chr3L 18014018 intron Eip75B - chr3L 18014077 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-440 1253 chr3L 18029958 18029978 chr3L 18030034 18030049 4 77 1.5 0.0 0.8 2.2 91 chr3L 18029958 intron Eip75B - chr3L 18030004 intron Eip75B - chr3L 18030049 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-440 1254 chr3L 18047711 18047738 chr3L 18056766 18056815 roo 12 9070 1.5 3.5 2.5 3.4 9104 chr3L 18047711 intron Eip75B - chr3L 18052263 intron Eip75B - chr3L 18056815 intron Eip75B - chr3L_12_18050001 chr3L_18050001 RAL-440 1255 chr3L 18064048 18064060 chr3L 18064152 18064166 4 105 0.5 1.0 0.8 2.2 118 chr3L 18064048 intron Eip75B - chr3L 18064107 intron Eip75B - chr3L 18064166 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-440 1256 chr3L 18075234 18075252 chr3L 18075519 18075523 5 282 5.5 3.0 4.2 1.0 289 chr3L 18075234 intergenic not near genes chr3L 18075378 intergenic not near genes chr3L 18075523 intergenic not near genes chr3L_5_18075001 chr3L_18075001 RAL-440 1257 chr3L 18106255 18106284 chr3L 18106371 18106410 4 130 3.5 0.0 1.8 1.4 155 chr3L 18106255 intergenic CG13698 -,mRpS26 + chr3L 18106332 intergenic CG13698 -,mRpS26 + chr3L 18106410 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-440 1258 chr3L 18118202 18118238 chr3L 18118300 18118334 9 97 5.0 5.5 5.2 1.5 132 chr3L 18118202 3` UTR,intron CG32195 +,CG7341 + chr3L 18118268 3` UTR,intron CG32195 +,CG7341 + chr3L 18118334 3` UTR,intron CG32195 +,CG7341 + chr3L_9_18115001 chr3L_18115001 RAL-440 1259 chr3L 18171851 18171890 chr3L 18171953 18171992 10 102 4.5 2.5 3.5 2.2 141 chr3L 18171851 intron W - chr3L 18171922 intron W - chr3L 18171992 intron W - chr3L_10_18170001 chr3L_18170001 RAL-440 1260 chr3L 18175815 18175829 chr3L 18176055 18176088 8 251 2.5 4.0 3.2 1.9 273 chr3L 18175815 intron W - chr3L 18175952 intron W - chr3L 18176088 intron W - chr3L_8_18175001 chr3L_18175001 RAL-440 1261 chr3L 18180935 18180963 chr3L 18181036 18181041 5 92 5.0 0.0 2.5 1.4 106 chr3L 18180935 intron W - chr3L 18180988 intron W - chr3L 18181041 intron W - chr3L_5_18180001 chr3L_18180001 RAL-440 1262 chr3L 18198930 18198931 chr3L 24821493 24821494 4 6622563 0.5 6.5 3.5 0.9 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-440 1263 chr3L 18248933 18248984 chr3L 18249051 18249098 10 112 1.0 0.5 0.8 5.6 165 chr3L 18248933 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249098 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-440 1264 chr3L 18255102 18255107 chr3L 18255188 18255195 4 88 4.5 4.5 4.5 0.7 93 chr3L 18255102 intergenic not near genes chr3L 18255148 intergenic not near genes chr3L 18255195 intergenic not near genes chr3L_4_18255001 chr3L_18255001 RAL-440 1265 chr3L 18255113 18255115 chr3L 18255183 18255212 5 90 4.5 4.5 4.5 0.9 99 chr3L 18255113 intergenic not near genes chr3L 18255162 intergenic not near genes chr3L 18255212 intergenic not near genes chr3L_5_18255001 chr3L_18255001 RAL-440 1266 chr3L 18262446 18262479 chr3L 18262563 18262586 7 112 3.5 2.0 2.8 1.8 140 chr3L 18262446 intergenic not near genes chr3L 18262516 intergenic not near genes chr3L 18262586 intergenic not near genes chr3L_7_18260001 chr3L_18260001 RAL-440 1267 chr3L 18408714 18408760 chr3L 18408817 18408853 11 99 3.5 1.5 2.5 3.1 139 chr3L 18408714 intergenic not near genes chr3L 18408784 intergenic not near genes chr3L 18408853 intergenic not near genes chr3L_11_18405001 chr3L_18405001 RAL-440 1268 chr3L 18437257 18437284 chr3L 18437375 18437394 6 114 1.5 4.0 2.8 1.6 137 chr3L 18437257 intergenic not near genes chr3L 18437326 intergenic not near genes chr3L 18437394 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-440 1269 chr3L 18448600 18448621 chr3L 18448709 18448730 5 111 3.5 2.5 3.0 1.2 130 chr3L 18448600 intergenic not near genes chr3L 18448665 intergenic not near genes chr3L 18448730 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-440 1270 chr3L 18456268 18456303 chr3L 18456360 18456411 8 98 5.5 3.0 4.2 1.5 143 chr3L 18456268 intergenic CR44670 - chr3L 18456340 intergenic CR44670 - chr3L 18456411 3` UTR CR44670 - chr3L_8_18455001 chr3L_18455001 RAL-440 1271 chr3L 18464485 18464508 chr3L 18464575 18464606 5 88 2.5 4.0 3.2 1.2 121 chr3L 18464485 intergenic not near genes chr3L 18464546 intergenic not near genes chr3L 18464606 intergenic not near genes chr3L_5_18460001 chr3L_18460001 RAL-440 1272 chr3L 18479069 18479096 chr3L 18479166 18479210 4 105 1.0 4.0 2.5 1.1 141 chr3L 18479069 5` UTR CR44673 + chr3L 18479140 5` UTR CR44673 + chr3L 18479210 5` UTR CR44673 + chr3L_4_18475001 chr3L_18475001 RAL-440 1273 chr3L 18528622 18528656 chr3L 18537786 18537826 roo 10 9174 3.0 0.5 1.8 3.6 9204 chr3L 18528622 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537826 intergenic not near genes chr3L_10_18530001 chr3L_18530001 RAL-440 1274 chr3L 18638570 18638609 chr3L 18638669 18638723 12 102 1.5 3.5 2.5 3.4 153 chr3L 18638570 intron MYPT-75D + chr3L 18638646 intron MYPT-75D + chr3L 18638723 intron MYPT-75D + chr3L_12_18635001 chr3L_18635001 RAL-440 1275 chr3L 18656170 18656219 chr3L 18656275 18656293 8 87 6.5 7.0 6.8 1.0 123 chr3L 18656170 intron MYPT-75D + chr3L 18656232 intron MYPT-75D + chr3L 18656293 intron MYPT-75D + chr3L_8_18655001 chr3L_18655001 RAL-440 1276 chr3L 18721763 18721798 chr3L 18721862 18721874 10 99 4.0 2.5 3.2 2.4 111 chr3L 18721763 intergenic CG12477 - chr3L 18721818 intergenic CG12477 - chr3L 18721874 intergenic CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-440 1277 chr3L 18741533 18741571 chr3L 18741762 18741780 8 222 3.0 5.5 4.2 1.5 247 chr3L 18741533 intergenic not near genes chr3L 18741656 intergenic not near genes chr3L 18741780 intergenic not near genes chr3L_8_18740001 chr3L_18740001 RAL-440 1278 chr3L 18772389 18772439 chr3L 18781090 18781140 roo 16 8692 4.0 4.5 4.2 3.1 8751 chr3L 18772389 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781140 intron ftz-f1 - chr3L_16_18775001 chr3L_18775001 RAL-440 1279 chr3L 18797295 18797334 chr3L 18797395 18797419 5 93 3.0 3.0 3.0 1.2 124 chr3L 18797295 intron ftz-f1 - chr3L 18797357 intron ftz-f1 - chr3L 18797419 intron ftz-f1 - chr3L_5_18795001 chr3L_18795001 RAL-440 1280 chr3L 18810137 18810174 chr3L 18810220 18810276 5 94 4.0 1.0 2.5 1.4 139 chr3L 18810137 intron CG14073 - chr3L 18810206 intron CG14073 - chr3L 18810276 intron CG14073 - chr3L_5_18810001 chr3L_18810001 RAL-440 1281 chr3L 18820867 18820893 chr3L 18821066 18821092 5 196 3.0 4.0 3.5 1.1 225 chr3L 18820867 intergenic CG14073 -,HipHop + chr3L 18820980 intergenic HipHop +,CG14073 - chr3L 18821092 intergenic HipHop +,CG14073 - chr3L_5_18820001 chr3L_18820001 RAL-440 1282 chr3L 18833773 18833798 chr3L 18834944 18834978 1360 9 1171 7.0 4.5 5.8 1.3 1205 chr3L 18833773 intron Indy - chr3L 18834376 intron Indy - chr3L 18834978 intron Indy - chr3L_9_18830001 chr3L_18830001 RAL-440 1283 chr3L 18839721 18839763 chr3L 18839819 18839825 13 94 3.5 5.5 4.5 2.4 104 chr3L 18839721 intron Indy - chr3L 18839773 intron Indy - chr3L 18839825 intron Indy - chr3L_13_18835001 chr3L_18835001 RAL-440 1284 chr3L 18902876 18902906 chr3L 18903053 18903074 9 174 36.0 44.5 40.2 0.2 198 chr3L 18902876 exon CG6843 + chr3L 18902975 intergenic CG6843 +,CSN1b - chr3L 18903074 3` UTR CSN1b - chr3L_9_18900001 chr3L_18900001 RAL-440 1285 chr3L 18900039 18900052 chr3L 18904642 18904681 10 4608 31.0 39.5 35.2 0.3 4642 chr3L 18900039 intergenic RpL26 + chr3L 18902360 exon CG6843 + chr3L 18904681 exon CSN1b - chr3L_10_18900001 chr3L_18900001 RAL-440 1286 chr3L 18924480 18924501 chr3L 18924562 18924569 4 83 0.5 2.0 1.2 1.8 89 chr3L 18924480 intron CG32204 - chr3L 18924524 intron CG32204 - chr3L 18924569 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-440 1287 chr3L 18929949 18929981 chr3L 18930040 18930070 6 91 2.0 3.5 2.8 1.6 121 chr3L 18929949 intron CG32204 - chr3L 18930010 intron CG32204 - chr3L 18930070 exon CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-440 1288 chr3L 18969605 18969621 chr3L 18969689 18969721 8 103 5.5 3.5 4.5 1.5 116 chr3L 18969605 intergenic not near genes chr3L 18969663 intergenic not near genes chr3L 18969721 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-440 1289 chr3L 19008836 19008867 chr3L 19009183 19009215 jockey 10 352 4.0 3.5 3.8 2.1 379 chr3L 19008836 intron nkd - chr3L 19009026 intron nkd - chr3L 19009215 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-440 1290 chr3L 19008869 19008870 chr3L 19009178 19009194 jockey 4 324 3.0 3.5 3.2 1.0 325 chr3L 19008869 intron nkd - chr3L 19009032 intron nkd - chr3L 19009194 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-440 1291 chr3L 19111287 19111323 chr3L 19111372 19111407 10 86 2.5 5.5 4.0 2.0 120 chr3L 19111287 intron CG14082 - chr3L 19111347 intron CG14082 - chr3L 19111407 intron CG14082 - chr3L_10_19110001 chr3L_19110001 RAL-440 1292 chr3L 19115652 19115669 chr3L 19115815 19115825 BS 4 170 7.0 2.5 4.8 0.7 173 chr3L 19115652 intron CG14082 - chr3L 19115738 intron CG14082 - chr3L 19115825 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-440 1293 chr3L 19117020 19117072 chr3L 19124487 19124530 mdg1 12 7450 6.5 4.5 5.5 1.8 7510 chr3L 19117020 intron CG14082 - chr3L 19120775 intron CG14082 - chr3L 19124530 intron CG14082 - chr3L_12_19120001 chr3L_19120001 RAL-440 1294 chr3L 19162363 19162397 chr3L 19162442 19162480 6 83 2.5 3.5 3.0 1.5 117 chr3L 19162363 intron fz2 - chr3L 19162422 intron fz2 - chr3L 19162480 intron fz2 - chr3L_6_19160001 chr3L_19160001 RAL-440 1295 chr3L 19182378 19182419 chr3L 19182467 19182520 9 92 1.0 3.5 2.2 2.8 142 chr3L 19182378 intron fz2 - chr3L 19182449 intron fz2 - chr3L 19182520 intron fz2 - chr3L_9_19180001 chr3L_19180001 RAL-440 1296 chr3L 19208063 19208089 chr3L 19209444 19209460 Doc 6 1376 2.5 3.0 2.8 1.6 1397 chr3L 19208063 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209460 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-440 1297 chr3L 19216495 19216521 chr3L 19216592 19216613 4 96 5.0 2.5 3.8 0.8 118 chr3L 19216495 intron fz2 - chr3L 19216554 intron fz2 - chr3L 19216613 intron fz2 - chr3L_4_19215001 chr3L_19215001 RAL-440 1298 chr3L 19228406 19228431 chr3L 19228502 19228543 10 104 4.0 3.0 3.5 2.2 137 chr3L 19228406 intron fz2 - chr3L 19228474 intron fz2 - chr3L 19228543 intron fz2 - chr3L_10_19225001 chr3L_19225001 RAL-440 1299 chr3L 19248831 19248866 chr3L 19248941 19248975 6 106 4.5 1.0 2.8 1.6 144 chr3L 19248831 intergenic not near genes chr3L 19248903 intergenic not near genes chr3L 19248975 intergenic not near genes chr3L_6_19245001 chr3L_19245001 RAL-440 1300 chr3L 19269807 19269849 chr3L 19270023 19270033 7 199 3.5 2.0 2.8 1.8 226 chr3L 19269807 intron,exon CG14085 +,CG14088 - chr3L 19269920 intron,exon CG14085 +,CG14088 - chr3L 19270033 intron,exon CG14085 +,CG14088 - chr3L_7_19265001 chr3L_19265001 RAL-440 1301 chr3L 19285872 19285905 chr3L 19285968 19285997 8 93 2.0 1.0 1.5 3.2 125 chr3L 19285872 intron Gbs-76A - chr3L 19285934 intron Gbs-76A - chr3L 19285997 intron Gbs-76A - chr3L_8_19285001 chr3L_19285001 RAL-440 1302 chr3L 19335724 19335770 chr3L 19335831 19335876 9 103 6.0 6.0 6.0 1.3 152 chr3L 19335724 intron pip - chr3L 19335800 intron pip - chr3L 19335876 intron pip - chr3L_9_19335001 chr3L_19335001 RAL-440 1303 chr3L 19338348 19338393 chr3L 19338463 19338505 5 113 0.0 3.5 1.8 1.8 157 chr3L 19338348 intergenic not near genes chr3L 19338426 intergenic not near genes chr3L 19338505 intergenic not near genes chr3L_5_19335001 chr3L_19335001 RAL-440 1304 chr3L 19342746 19342765 chr3L 19342856 19342876 7 106 2.5 1.5 2.0 2.3 130 chr3L 19342746 3` UTR CG32206 - chr3L 19342811 3` UTR CG32206 - chr3L 19342876 3` UTR CG32206 - chr3L_7_19340001 chr3L_19340001 RAL-440 1305 chr3L 19379171 19379194 chr3L 19379277 19379301 11 103 4.5 4.0 4.2 2.1 130 chr3L 19379171 intron CG32206 - chr3L 19379236 intron CG32206 - chr3L 19379301 intron CG32206 - chr3L_11_19375001 chr3L_19375001 RAL-440 1306 chr3L 19695418 19695456 chr3L 19695508 19695540 5 86 2.5 3.0 2.8 1.3 122 chr3L 19695418 intergenic verm - chr3L 19695479 intergenic verm - chr3L 19695540 intergenic verm - chr3L_5_19695001 chr3L_19695001 RAL-440 1307 chr3L 19820278 19820314 chr3L 19827847 19827876 412 5 7566 2.5 2.0 2.2 1.6 7598 chr3L 19820278 intron Deaf1 + chr3L 19824077 intron Deaf1 + chr3L 19827876 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-440 1308 chr3L 19848491 19848531 chr3L 19857697 19857702 roo 13 9198 8.0 7.0 7.5 1.5 9211 chr3L 19848491 intron Papss + chr3L 19853096 intron Papss + chr3L 19857702 intron Papss + chr3L_13_19850001 chr3L_19850001 RAL-440 1309 chr3L 19861833 19861852 chr3L 19863613 19863646 S-element 9 1790 2.5 1.5 2.0 3.0 1813 chr3L 19861833 5` UTR CR45433 + chr3L 19862740 intergenic not near genes chr3L 19863646 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-440 1310 chr3L 19903263 19903297 chr3L 19903365 19903398 8 97 11.5 11.0 11.2 0.7 135 chr3L 19903263 intron,intron Mi-2 -,Su(Tpl) - chr3L 19903330 intron,intron Mi-2 -,Su(Tpl) - chr3L 19903398 intron,intron Mi-2 -,Su(Tpl) - chr3L_8_19900001 chr3L_19900001 RAL-440 1311 chr3L 19933534 19933560 chr3L 19934359 19934394 7 829 5.0 3.0 4.0 1.4 860 chr3L 19933534 intergenic CR45678 + chr3L 19933964 5` UTR CR45678 + chr3L 19934394 intergenic CR45678 + chr3L_7_19930001 chr3L_19930001 RAL-440 1312 chr3L 19961280 19961302 chr3L 19961497 19961516 8 219 6.0 3.5 4.8 1.4 236 chr3L 19961280 intron Ac76E + chr3L 19961398 intron Ac76E + chr3L 19961516 intron Ac76E + chr3L_8_19960001 chr3L_19960001 RAL-440 1313 chr3L 19962948 19962963 chr3L 19963025 19963046 6 87 1.5 3.5 2.5 1.7 98 chr3L 19962948 intron Ac76E + chr3L 19962997 intron Ac76E + chr3L 19963046 intron Ac76E + chr3L_6_19960001 chr3L_19960001 RAL-440 1314 chr3L 19962969 19962980 chr3L 19963024 19963068 4 76 1.0 3.5 2.2 1.2 99 chr3L 19962969 intron Ac76E + chr3L 19963018 intron Ac76E + chr3L 19963068 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-440 1315 chr3L 19981188 19981233 chr3L 19981283 19981333 10 96 3.0 2.0 2.5 2.9 145 chr3L 19981188 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981333 intergenic CG17732 + chr3L_10_19980001 chr3L_19980001 RAL-440 1316 chr3L 20056259 20056286 chr3L 20056368 20056394 7 103 12.5 11.5 12.0 0.5 135 chr3L 20056259 intergenic not near genes chr3L 20056326 intergenic not near genes chr3L 20056394 intergenic not near genes chr3L_7_20055001 chr3L_20055001 RAL-440 1317 chr3L 20076817 20076865 chr3L 20076974 20076997 7 146 13.5 10.0 11.8 0.5 180 chr3L 20076817 intron sNPF-R - chr3L 20076907 intron sNPF-R - chr3L 20076997 intron sNPF-R - chr3L_7_20075001 chr3L_20075001 RAL-440 1318 chr3L 20086788 20086812 chr3L 20086866 20086894 4 86 8.0 6.0 7.0 0.5 106 chr3L 20086788 intron sNPF-R - chr3L 20086841 intron sNPF-R - chr3L 20086894 intron sNPF-R - chr3L_4_20085001 chr3L_20085001 RAL-440 1319 chr3L 20113641 20113686 chr3L 20122917 20122960 roo 4 9275 0.5 3.5 2.0 1.3 9319 chr3L 20113641 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122960 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-440 1320 chr3L 20143066 20143116 chr3L 20143164 20143207 12 92 7.0 4.0 5.5 1.8 141 chr3L 20143066 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143207 intergenic not near genes chr3L_12_20140001 chr3L_20140001 RAL-440 1321 chr3L 20157955 20157993 chr3L 20158071 20158096 5 111 12.0 6.0 9.0 0.5 141 chr3L 20157955 intron CG42674 - chr3L 20158026 intron CG42674 - chr3L 20158096 intron CG42674 - chr3L_5_20155001 chr3L_20155001 RAL-440 1322 chr3L 20158895 20158929 chr3L 20159043 20159079 4 156 9.0 10.5 9.8 0.4 184 chr3L 20158895 intron CG42674 - chr3L 20158987 intron CG42674 - chr3L 20159079 intron CG42674 - chr3L_4_20155001 chr3L_20155001 RAL-440 1323 chr3L 20187466 20187486 chr3L 20187539 20187572 8 87 20.0 22.5 21.2 0.4 106 chr3L 20187466 intron CG42674 - chr3L 20187519 intron CG42674 - chr3L 20187572 intron CG42674 - chr3L_8_20185001 chr3L_20185001 RAL-440 1324 chr3L 20257312 20257361 chr3L 20258452 20258486 pogo 5 1133 5.5 9.0 7.2 0.6 1174 chr3L 20257312 intron rdgC + chr3L 20257899 intron rdgC + chr3L 20258486 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-440 1325 chr3L 20283662 20283707 chr3L 20283763 20283800 5 97 15.5 12.0 13.8 0.3 138 chr3L 20283662 intron gogo - chr3L 20283731 intron gogo - chr3L 20283800 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-440 1326 chr3L 20386933 20386967 chr3L 20387040 20387084 10 116 2.5 4.5 3.5 2.2 151 chr3L 20386933 intron fbl + chr3L 20387008 intron fbl + chr3L 20387084 intron fbl + chr3L_10_20385001 chr3L_20385001 RAL-440 1327 chr3L 20402184 20402207 chr3L 20402276 20402305 5 95 6.5 5.5 6.0 0.7 121 chr3L 20402184 intergenic not near genes chr3L 20402244 intergenic not near genes chr3L 20402305 intergenic not near genes chr3L_5_20400001 chr3L_20400001 RAL-440 1328 chr3L 20476736 20476782 chr3L 20484355 20484401 springer 17 7612 4.5 6.5 5.5 2.6 7665 chr3L 20476736 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484401 3` UTR ZnT77C - chr3L_17_20480001 chr3L_20480001 RAL-440 1329 chr3L 20548355 20548388 chr3L 20548461 20548482 6 99 4.5 6.5 5.5 0.9 127 chr3L 20548355 intergenic not near genes chr3L 20548418 intergenic not near genes chr3L 20548482 intergenic not near genes chr3L_6_20545001 chr3L_20545001 RAL-440 1330 chr3L 20616141 20616168 chr3L 20616346 20616388 6 212 2.0 10.5 6.2 0.8 247 chr3L 20616141 intron knrl - chr3L 20616264 intron knrl - chr3L 20616388 intron knrl - chr3L_6_20615001 chr3L_20615001 RAL-440 1331 chr3L 20849269 20849297 chr3L 20849350 20849395 8 92 3.5 1.5 2.5 2.3 126 chr3L 20849269 intron CG32432 - chr3L 20849332 intron CG32432 - chr3L 20849395 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-440 1332 chr3L 20858064 20858103 chr3L 20858179 20858201 13 114 3.5 4.5 4.0 2.6 137 chr3L 20858064 intron CG32432 - chr3L 20858132 intron CG32432 - chr3L 20858201 intron CG32432 - chr3L_13_20855001 chr3L_20855001 RAL-440 1333 chr3L 21011468 21011493 chr3L 21011737 21011763 6 272 10.5 21.0 15.8 0.4 295 chr3L 21011468 intron skd - chr3L 21011616 intron skd - chr3L 21011763 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-440 1334 chr3L 21014907 21014942 chr3L 21023395 21023399 Tirant 6 8478 4.5 2.0 3.2 1.4 8492 chr3L 21014907 intron skd - chr3L 21019153 intron skd - chr3L 21023399 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-440 1335 chr3L 21082204 21082228 chr3L 21082286 21082312 11 88 3.0 3.0 3.0 2.8 108 chr3L 21082204 intron ko - chr3L 21082258 intron ko - chr3L 21082312 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-440 1336 chr3L 21151845 21151866 chr3L 21156949 21156970 flea 4 5104 4.0 2.5 3.2 1.0 5125 chr3L 21151845 intron Ac78C - chr3L 21154408 intron Ac78C - chr3L 21156970 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-440 1337 chr3L 21151867 21151896 chr3L 21156946 21156975 flea 5 5092 2.0 2.0 2.0 1.7 5108 chr3L 21151867 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156975 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-440 1338 chr3L 21232439 21232487 chr3L 21232578 21232617 7 136 7.5 12.0 9.8 0.6 178 chr3L 21232439 intron Eip78C + chr3L 21232528 intron Eip78C + chr3L 21232617 intron Eip78C + chr3L_7_21230001 chr3L_21230001 RAL-440 1339 chr3L 21266320 21266345 chr3L 21266411 21266428 4 94 11.5 10.5 11.0 0.3 108 chr3L 21266320 3` UTR Eip78C + chr3L 21266374 3` UTR Eip78C + chr3L 21266428 3` UTR Eip78C + chr3L_4_21265001 chr3L_21265001 RAL-440 1340 chr3L 21303702 21303737 chr3L 21303800 21303844 8 102 9.5 10.0 9.8 0.7 142 chr3L 21303702 intron CG11309 - chr3L 21303773 intron CG11309 - chr3L 21303844 intron CG11309 - chr3L_8_21300001 chr3L_21300001 RAL-440 1341 chr3L 21306140 21306179 chr3L 21315306 21315356 roo 9 9175 1.5 2.5 2.0 3.0 9216 chr3L 21306140 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310748 intron Pc - chr3L 21315356 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-440 1342 chr3L 21319521 21319556 chr3L 21319623 21319663 9 96 18.0 13.5 15.8 0.5 142 chr3L 21319521 5` UTR Rab26 + chr3L 21319592 5` UTR Rab26 + chr3L 21319663 5` UTR Rab26 + chr3L_9_21315001 chr3L_21315001 RAL-440 1343 chr3L 21406993 21407026 chr3L 21407072 21407114 6 81 5.0 6.0 5.5 0.9 121 chr3L 21406993 intron rgn + chr3L 21407054 intron rgn + chr3L 21407114 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-440 1344 chr3L 21415137 21415164 chr3L 21415226 21415267 4 96 9.0 11.5 10.2 0.4 130 chr3L 21415137 intron rgn + chr3L 21415202 intron rgn + chr3L 21415267 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-440 1345 chr3L 21415876 21415910 chr3L 21415989 21416026 4 108 13.0 17.0 15.0 0.2 150 chr3L 21415876 intron rgn + chr3L 21415951 intron rgn + chr3L 21416026 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-440 1346 chr3L 21492806 21492818 chr3L 21493056 21493070 5 248 7.0 8.0 7.5 0.6 264 chr3L 21492806 intergenic CG7202 -,CG7519 + chr3L 21492938 intergenic CG7519 +,CG7202 - chr3L 21493070 intergenic CG7519 +,CG7202 - chr3L_5_21490001 chr3L_21490001 RAL-440 1347 chr3L 21501162 21501170 chr3L 21501276 21501277 1360 4 112 7.5 10.0 8.8 0.4 115 chr3L 21501162 intron Glg1 - chr3L 21501220 intron Glg1 - chr3L 21501277 intron Glg1 - chr3L_4_21500001 chr3L_21500001 RAL-440 1348 chr3L 21639205 21639226 chr3L 21639291 21639319 6 88 8.5 14.5 11.5 0.5 114 chr3L 21639205 intergenic CG32444 +,CG32445 + chr3L 21639262 intergenic CG32445 +,CG32444 + chr3L 21639319 intergenic CG32445 +,CG32444 + chr3L_6_21635001 chr3L_21635001 RAL-440 1349 chr3L 21656985 21657025 chr3L 21657088 21657134 7 103 10.5 11.5 11.0 0.6 149 chr3L 21656985 intron CG43980 + chr3L 21657060 intron CG43980 + chr3L 21657134 intron CG43980 + chr3L_7_21655001 chr3L_21655001 RAL-440 1350 chr3L 21749334 21749350 chr3L 21754485 21754495 Doc 5 5152 2.5 3.5 3.0 1.2 5161 chr3L 21749334 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754495 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-440 1351 chr3L 21767036 21767063 chr3L 21767127 21767159 5 96 2.0 3.0 2.5 1.4 123 chr3L 21767036 intron Syn1 - chr3L 21767098 intron Syn1 - chr3L 21767159 intron Syn1 - chr3L_5_21765001 chr3L_21765001 RAL-440 1352 chr3L 21776677 21776690 chr3L 21776770 21776789 4 99 6.5 5.5 6.0 0.6 112 chr3L 21776677 intron,intron CG42689 +,CG42552 + chr3L 21776733 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-440 1353 chr3L 21905353 21905361 chr3L 21905416 21905423 4 67 13.0 13.0 13.0 0.3 70 chr3L 21905353 intron mub + chr3L 21905388 intron mub + chr3L 21905423 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-440 1354 chr3L 21991102 21991150 chr3L 21991225 21991273 7 120 15.0 14.0 14.5 0.5 171 chr3L 21991102 intergenic not near genes chr3L 21991188 intergenic not near genes chr3L 21991273 intergenic not near genes chr3L_7_21990001 chr3L_21990001 RAL-440 1355 chr3L 21998480 21998521 chr3L 21998616 21998646 8 125 7.0 3.0 5.0 1.3 166 chr3L 21998480 intergenic not near genes chr3L 21998563 intergenic not near genes chr3L 21998646 intergenic not near genes chr3L_8_21995001 chr3L_21995001 RAL-440 1356 chr3L 22010142 22010177 chr3L 22010248 22010273 9 101 13.5 10.0 11.8 0.7 131 chr3L 22010142 intergenic not near genes chr3L 22010208 intergenic not near genes chr3L 22010273 intergenic not near genes chr3L_9_22010001 chr3L_22010001 RAL-440 1357 chr3L 22010492 22010639 chr3L 22010727 22010807 7 188 1.5 2.5 2.0 2.3 315 chr3L 22010492 intergenic not near genes chr3L 22010650 intergenic not near genes chr3L 22010807 intergenic not near genes chr3L_7_22010001 chr3L_22010001 RAL-440 1358 chr3L 22012341 22012380 chr3L 22012503 22012555 8 161 9.5 7.5 8.5 0.8 214 chr3L 22012341 intergenic not near genes chr3L 22012448 intergenic not near genes chr3L 22012555 intergenic not near genes chr3L_8_22010001 chr3L_22010001 RAL-440 1359 chr3L 22044570 22044591 chr3L 22044656 22044678 6 90 13.0 13.5 13.2 0.4 108 chr3L 22044570 intron Oct-TyrR + chr3L 22044624 intron Oct-TyrR + chr3L 22044678 intron Oct-TyrR + chr3L_6_22040001 chr3L_22040001 RAL-440 1360 chr3L 22046163 22046217 chr3L 22046285 22046322 12 114 12.5 14.5 13.5 0.8 159 chr3L 22046163 intron Oct-TyrR + chr3L 22046242 intron Oct-TyrR + chr3L 22046322 intron Oct-TyrR + chr3L_12_22045001 chr3L_22045001 RAL-440 1361 chr3L 22099669 22099702 chr3L 22105864 22105908 3S18 5 6193 2.0 3.0 2.5 1.4 6239 chr3L 22099669 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105908 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-440 1362 chr3L 22124813 22124840 chr3L 22124896 22124942 5 97 12.0 12.5 12.2 0.4 129 chr3L 22124813 intergenic not near genes chr3L 22124878 intergenic not near genes chr3L 22124942 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-440 1363 chr3L 22151660 22151696 chr3L 22151757 22151795 6 97 9.5 12.0 10.8 0.5 135 chr3L 22151660 intron olf413 + chr3L 22151728 intron olf413 + chr3L 22151795 intron olf413 + chr3L_6_22150001 chr3L_22150001 RAL-440 1364 chr3L 22169449 22169476 chr3L 22169551 22169582 5 104 11.0 14.0 12.5 0.4 133 chr3L 22169449 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169582 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-440 1365 chr3L 22250867 22250908 chr3L 22250994 22251021 6 124 12.0 11.0 11.5 0.5 154 chr3L 22250867 intergenic not near genes chr3L 22250944 intergenic not near genes chr3L 22251021 intergenic not near genes chr3L_6_22250001 chr3L_22250001 RAL-440 1366 chr3L 22399574 22399608 chr3L 22399666 22399708 7 94 7.5 10.5 9.0 0.7 134 chr3L 22399574 intron Ten-m - chr3L 22399641 intron Ten-m - chr3L 22399708 intron Ten-m - chr3L_7_22395001 chr3L_22395001 RAL-440 1367 chr3L 22447202 22447232 chr3L 22447288 22447337 13 101 1.0 0.5 0.8 7.2 135 chr3L 22447202 intergenic not near genes chr3L 22447270 intergenic not near genes chr3L 22447337 intergenic not near genes chr3L_13_22445001 chr3L_22445001 RAL-440 1368 chr3L 22513011 22513035 chr3L 22513118 22513140 4 103 5.0 6.0 5.5 0.6 129 chr3L 22513011 intergenic not near genes chr3L 22513076 intergenic not near genes chr3L 22513140 intergenic not near genes chr3L_4_22510001 chr3L_22510001 RAL-440 1369 chr3L 22555751 22555776 chr3L 22563240 22563262 blood 5 7483 8.0 1.0 4.5 0.9 7511 chr3L 22555751 intergenic not near genes chr3L 22559506 intergenic not near genes chr3L 22563262 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-440 1370 chr3L 22571100 22571110 chr3L 22571172 22571214 4 82 9.5 14.0 11.8 0.3 114 chr3L 22571100 intergenic not near genes chr3L 22571157 intergenic not near genes chr3L 22571214 intergenic not near genes chr3L_4_22570001 chr3L_22570001 RAL-440 1371 chr3L 22617177 22617221 chr3L 22624643 22624677 blood 7 7461 3.0 4.0 3.5 1.6 7500 chr3L 22617177 intron CG14459 - chr3L 22620927 intron CG14459 - chr3L 22624677 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-440 1372 chr3L 22652316 22652343 chr3L 22652474 22652488 4 153 14.0 11.0 12.5 0.3 172 chr3L 22652316 exon CG33772 - chr3L 22652402 intron CG33772 - chr3L 22652488 exon CG33772 - chr3L_4_22650001 chr3L_22650001 RAL-440 1373 chr3L 22732449 22732490 chr3L 22732550 22732591 10 95 9.0 11.0 10.0 0.9 142 chr3L 22732449 intron CG11367 + chr3L 22732520 intron CG11367 + chr3L 22732591 exon CG11367 + chr3L_10_22730001 chr3L_22730001 RAL-440 1374 chr3L 22761386 22761408 chr3L 22766829 22766834 Ivk 5 5445 16.5 9.0 12.8 0.4 5448 chr3L 22761386 intron SPoCk + chr3L 22764110 intron SPoCk + chr3L 22766834 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-440 1375 chr3L 22771836 22771854 chr3L 22771931 22771956 4 93 16.5 20.5 18.5 0.2 120 chr3L 22771836 intron SPoCk + chr3L 22771896 intron SPoCk + chr3L 22771956 intron SPoCk + chr3L_4_22770001 chr3L_22770001 RAL-440 1376 chr3L 22838574 22838606 chr3L 22838671 22838695 4 97 5.0 6.0 5.5 0.6 121 chr3L 22838574 intergenic CG11226 + chr3L 22838634 intergenic CG11226 + chr3L 22838695 intergenic not near genes chr3L_4_22835001 chr3L_22835001 RAL-440 1377 chr3L 22853444 22853723 chr3L 22853549 22853814 21 97 2.5 6.5 4.5 3.8 370 chr3L 22853444 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853629 5` UTR CR43426 + chr3L 22853814 5` UTR CR43426 + chr3L_21_22850001 chr3L_22850001 RAL-440 1378 chr3L 22865971 22866014 chr3L 22867113 22867162 Doc 14 1147 3.5 3.5 3.5 3.1 1191 chr3L 22865971 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867162 intron CG33170 + chr3L_14_22865001 chr3L_22865001 RAL-440 1379 chr3L 19220635 19220636 chr3L 22908066 22908066 4 3687430 16.5 24.0 20.2 0.2 3687431 chr3L 19220635 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-440 1380 chr3L 22908066 22908066 chr3L 24821492 24821494 5 1913427 23.0 6.0 14.5 0.3 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_5_23860001 chr3L_23860001 RAL-440 1381 chr3L 19220635 19220637 chr3L 22908067 22908067 5 3687431 16.5 24.5 20.5 0.2 3687432 chr3L 19220635 intron fz2 - chr3L 21064351 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-440 1382 chr3L 22908067 22908067 chr3L 24821492 24821494 5 1913426 23.0 6.0 14.5 0.3 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_5_23860001 chr3L_23860001 RAL-440 1383 chr3L 22909019 22909054 chr3L 22909115 22909121 6 90 11.5 13.0 12.2 0.5 102 chr3L 22909019 intergenic CR45661 + chr3L 22909070 intergenic CR45661 + chr3L 22909121 intergenic CR45661 + chr3L_6_22905001 chr3L_22905001 RAL-440 1384 chr3L 22967636 22967667 chr3L 22967735 22967740 4 87 3.0 6.5 4.8 0.7 104 chr3L 22967636 intergenic not near genes chr3L 22967688 intergenic not near genes chr3L 22967740 intergenic not near genes chr3L_4_22965001 chr3L_22965001 RAL-440 1385 chr3L 22989845 22989857 chr3L 22996838 22996842 297 5 6992 10.5 1.5 6.0 0.7 6997 chr3L 22989845 intergenic not near genes chr3L 22993344 intergenic not near genes chr3L 22996842 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-440 1386 chr3L 22989861 22989872 chr3L 22996834 22996851 297 7 6981 7.0 1.5 4.2 1.3 6990 chr3L 22989861 intergenic not near genes chr3L 22993356 intergenic not near genes chr3L 22996851 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-440 1387 chr3L 23011141 23011161 chr3L 23011227 23011246 4 91 9.5 10.5 10.0 0.4 105 chr3L 23011141 intron nrm + chr3L 23011194 intron nrm + chr3L 23011246 intron nrm + chr3L_4_23010001 chr3L_23010001 RAL-440 1388 chr3L 23183291 23183333 chr3L 23183504 23183535 6 207 19.5 13.5 16.5 0.3 244 chr3L 23183291 intron CG34031 + chr3L 23183413 intron CG34031 + chr3L 23183535 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-440 1389 chr3L 23428242 23428269 chr3L 23428326 23428364 4 84 9.5 8.0 8.8 0.4 122 chr3L 23428242 intergenic not near genes chr3L 23428303 intergenic not near genes chr3L 23428364 intergenic not near genes chr3L_4_23425001 chr3L_23425001 RAL-440 1390 chr3L 23665522 23665527 chr3L 23665624 23665637 gypsy8 7 108 31.5 26.5 29.0 0.2 115 chr3L 23665522 intron AGO3 + chr3L 23665580 intron AGO3 + chr3L 23665637 intron AGO3 + chr3L_7_23665001 chr3L_23665001 RAL-440 1391 chr3L 23854280 23854318 chr3L 23854398 23854433 5 110 5.5 5.5 5.5 0.8 153 chr3L 23854280 intron CG40470 - chr3L 23854356 intron CG40470 - chr3L 23854433 intron CG40470 - chr3L_5_23850001 chr3L_23850001 RAL-440 1392 chr3L 24009646 24009699 chr3L 24009848 24009891 11 195 3.5 4.5 4.0 2.2 245 chr3L 24009646 intergenic CR40053 - chr3L 24009768 intergenic CR40053 - chr3L 24009891 intergenic CR40053 - chr3L_11_24005001 chr3L_24005001 RAL-440 1393 chr3L 24021279 24021314 chr3L 24022441 24022451 1360 4 1160 5.0 6.5 5.8 0.6 1172 chr3L 24021279 intergenic not near genes chr3L 24021865 intergenic not near genes chr3L 24022451 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-440 1394 chr3L 24036734 24036774 chr3L 24036841 24036869 7 100 10.5 11.5 11.0 0.6 135 chr3L 24036734 intergenic not near genes chr3L 24036802 intergenic not near genes chr3L 24036869 intergenic not near genes chr3L_7_24035001 chr3L_24035001 RAL-440 1395 chr3L 24282147 24282169 chr3L 24282240 24282262 5 96 1.5 2.5 2.0 1.7 115 chr3L 24282147 intron Snap25 + chr3L 24282204 intron Snap25 + chr3L 24282262 intron Snap25 + chr3L_5_24280001 chr3L_24280001 RAL-440 1396 chr3L 24282170 24282183 chr3L 24282233 24282260 8 80 1.0 1.5 1.2 3.6 90 chr3L 24282170 intron Snap25 + chr3L 24282215 intron Snap25 + chr3L 24282260 intron Snap25 + chr3L_8_24280001 chr3L_24280001 RAL-440 1397 chr3L 24349927 24349956 chr3L 24352507 24352528 6 2582 7.5 9.5 8.5 0.6 2601 chr3L 24349927 intron nvd + chr3L 24351228 intron nvd + chr3L 24352528 intron nvd + chr3L_6_24350001 chr3L_24350001 RAL-440 1398 chr3L 24363228 24363245 chr3L 24363317 24363343 4 93 5.0 6.5 5.8 0.6 115 chr3L 24363228 intron nvd + chr3L 24363286 intron nvd + chr3L 24363343 intron nvd + chr3L_4_24360001 chr3L_24360001 RAL-440 1399 chr3L 24363247 24363273 chr3L 24363315 24363356 10 86 3.5 6.0 4.8 1.7 109 chr3L 24363247 intron nvd + chr3L 24363302 intron nvd + chr3L 24363356 intron nvd + chr3L_10_24360001 chr3L_24360001 RAL-440 1400 chr3L 25106587 25106603 chr3L 25106677 25106710 8 100 14.5 12.5 13.5 0.6 123 chr3L 25106587 intergenic not near genes chr3L 25106648 intergenic not near genes chr3L 25106710 intergenic not near genes chr3L_8_25105001 chr3L_25105001 RAL-440 1401 chr3L 25106606 25106616 chr3L 25106672 25106706 5 84 14.0 11.5 12.8 0.4 100 chr3L 25106606 intergenic not near genes chr3L 25106656 intergenic not near genes chr3L 25106706 intergenic not near genes chr3L_5_25105001 chr3L_25105001 RAL-440 1402 chr3L 25268545 25268583 chr3L 25268645 25268683 6 101 5.0 3.5 4.2 1.2 138 chr3L 25268545 intron CG40467 - chr3L 25268614 intron CG40467 - chr3L 25268683 intron CG40467 - chr3L_6_25265001 chr3L_25265001 RAL-440 1403 chr3L 25628503 25628528 chr3L 25633264 25633303 F-element 8 4777 3.5 2.0 2.8 2.1 4800 chr3L 25628503 intron CG41343 - chr3L 25630903 intron CG41343 - chr3L 25633303 intron CG41343 - chr3L_8_25630001 chr3L_25630001 RAL-440 1404 chr3L 25887119 25887156 chr3L 25887286 25887330 6 172 3.0 3.0 3.0 1.5 211 chr3L 25887119 intron CG40178 - chr3L 25887224 intron CG40178 - chr3L 25887330 intron CG40178 - chr3L_6_25885001 chr3L_25885001 RAL-440 1405 chr3L 26694930 26694946 chr3L 26695017 26695046 5 96 3.0 4.0 3.5 1.1 116 chr3L 26694930 intergenic not near genes chr3L 26694988 intergenic not near genes chr3L 26695046 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-440 1406 chr3L 26694952 26694956 chr3L 26695010 26695037 5 81 1.5 3.0 2.2 1.6 85 chr3L 26694952 intergenic not near genes chr3L 26694994 intergenic not near genes chr3L 26695037 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-440 1407 chr3L 27167957 27167972 chr3L 27168069 27168112 6 123 14.5 11.5 13.0 0.4 155 chr3L 27167957 intergenic not near genes chr3L 27168034 intergenic not near genes chr3L 27168112 intergenic not near genes chr3L_6_27165001 chr3L_27165001 RAL-440 1408 chr3L 27368876 27368888 chr3L 27369424 27369453 7 556 8.0 3.0 5.5 1.1 577 chr3L 27368876 intron Dbp80 + chr3L 27369164 intron Dbp80 + chr3L 27369453 intron Dbp80 + chr3L_7_27365001 chr3L_27365001 RAL-440 1409 chr3L 27390681 27390709 chr3L 27390767 27390792 6 81 33.5 36.5 35.0 0.2 111 chr3L 27390681 intron Dbp80 + chr3L 27390736 intron Dbp80 + chr3L 27390792 intron Dbp80 + chr3L_6_27390001 chr3L_27390001 RAL-440 1410 chr3R 1202774 1202801 chr3R 1203135 1203165 4 360 4.5 6.5 5.5 0.6 391 chr3R 1202774 intergenic not near genes chr3R 1202970 intergenic not near genes chr3R 1203165 intergenic not near genes chr3R_4_1200001 chr3R_1200001 RAL-440 1411 chr3R 1938786 1939083 chr3R 1938899 1939197 6 111 3.0 7.0 5.0 1.0 411 chr3R 1938786 intergenic not near genes chr3R 1938992 intergenic not near genes chr3R 1939197 intergenic not near genes chr3R_6_1935001 chr3R_1935001 RAL-440 1412 chr3R 3267253 3267261 chr3R 3267414 3267448 6 172 11.5 23.5 17.5 0.3 195 chr3R 3267253 intergenic not near genes chr3R 3267350 intergenic not near genes chr3R 3267448 intergenic not near genes chr3R_6_3265001 chr3R_3265001 RAL-440 1413 chr3R 3752735 3752760 chr3R 3752835 3752863 6 93 2.5 6.5 4.5 1.1 128 chr3R 3752735 intergenic CG41128 + chr3R 3752799 intergenic CG41128 + chr3R 3752863 intergenic not near genes chr3R_6_3750001 chr3R_3750001 RAL-440 1414 chr3R 4195476 4195506 chr3R 4195790 4195820 8 318 15.0 12.5 13.8 0.5 344 chr3R 4195476 intergenic not near genes chr3R 4195648 intergenic not near genes chr3R 4195820 intergenic not near genes chr3R_8_4195001 chr3R_4195001 RAL-440 1415 chr3R 4206063 4206098 chr3R 4211653 4211676 mdg3 8 5584 5.0 3.0 4.0 1.6 5613 chr3R 4206063 intron CG14636 - chr3R 4208870 intron CG14636 - chr3R 4211676 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-440 1416 chr3R 4366756 4366784 chr3R 4375138 4375186 roo 4 8394 2.0 2.5 2.2 1.2 8430 chr3R 4366756 3` UTR CG1090 + chr3R 4370971 intergenic not near genes chr3R 4375186 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-440 1417 chr3R 4408400 4408443 chr3R 4412714 4412739 Juan 12 4312 3.5 3.5 3.5 2.7 4339 chr3R 4408400 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412739 intron CG32944 - chr3R_12_4410001 chr3R_4410001 RAL-440 1418 chr3R 4538900 4538907 chr3R 4540154 4540170 1360 4 1268 2.0 4.0 3.0 1.0 1270 chr3R 4538900 intron CG34357 - chr3R 4539535 intron CG34357 - chr3R 4540170 intron CG34357 - chr3R_4_4535001 chr3R_4535001 RAL-440 1419 chr3R 4568592 4568729 chr3R 4568693 4568802 12 96 16.0 13.0 14.5 0.8 210 chr3R 4568592 intergenic not near genes chr3R 4568697 intergenic not near genes chr3R 4568802 intergenic not near genes chr3R_12_4565001 chr3R_4565001 RAL-440 1420 chr3R 4594325 4594373 chr3R 4594427 4594465 6 94 8.5 8.0 8.2 0.7 140 chr3R 4594325 intergenic not near genes chr3R 4594395 intergenic not near genes chr3R 4594465 intergenic not near genes chr3R_6_4590001 chr3R_4590001 RAL-440 1421 chr3R 4606731 4606780 chr3R 4607100 4607131 5 361 12.0 18.5 15.2 0.3 400 chr3R 4606731 intergenic not near genes chr3R 4606931 intergenic not near genes chr3R 4607131 intergenic not near genes chr3R_5_4605001 chr3R_4605001 RAL-440 1422 chr3R 4609531 4609582 chr3R 4610710 4610741 1360 19 1175 4.0 4.0 4.0 3.8 1210 chr3R 4609531 intergenic not near genes chr3R 4610136 intergenic not near genes chr3R 4610741 intergenic not near genes chr3R_19_4610001 chr3R_4610001 RAL-440 1423 chr3R 4681823 4681842 chr3R 4681923 4681936 4 97 12.5 11.0 11.8 0.3 113 chr3R 4681823 intron CG43427 + chr3R 4681880 intron CG43427 + chr3R 4681936 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-440 1424 chr3R 4681847 4681858 chr3R 4681919 4681941 5 86 11.0 11.0 11.0 0.4 94 chr3R 4681847 intron CG43427 + chr3R 4681894 intron CG43427 + chr3R 4681941 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-440 1425 chr3R 4683172 4683202 chr3R 4684940 4684956 S-element 4 1767 5.0 4.0 4.5 0.7 1784 chr3R 4683172 intron CG43427 + chr3R 4684064 intron CG43427 + chr3R 4684956 intron CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-440 1426 chr3R 4753236 4753265 chr3R 4757550 4757587 F-element 5 4316 9.5 5.5 7.5 0.6 4351 chr3R 4753236 intron,intron atms +,CG44098 - chr3R 4755412 intron,intron atms +,CG44098 - chr3R 4757587 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-440 1427 chr3R 4759710 4759746 chr3R 4761226 4761238 hopper2 6 1510 8.5 22.5 15.5 0.4 1528 chr3R 4759710 intron,intron atms +,CG44098 - chr3R 4760474 intron,intron atms +,CG44098 - chr3R 4761238 intron,intron atms +,CG44098 - chr3R_6_4760001 chr3R_4760001 RAL-440 1428 chr3R 4861565 4861579 chr3R 4861646 4861660 4 82 5.5 2.0 3.8 0.8 95 chr3R 4861565 intron opa + chr3R 4861612 intron opa + chr3R 4861660 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-440 1429 chr3R 4887481 4887511 chr3R 4894855 4894882 rover 5 7372 4.5 4.0 4.2 1.0 7401 chr3R 4887481 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894882 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-440 1430 chr3R 4896277 4896326 chr3R 4896387 4896435 7 109 1.0 4.5 2.8 1.8 158 chr3R 4896277 intergenic CR45580 + chr3R 4896356 intergenic CR45580 + chr3R 4896435 5` UTR CR45580 + chr3R_7_4895001 chr3R_4895001 RAL-440 1431 chr3R 4943595 4943605 chr3R 4943720 4943730 4 124 15.5 7.0 11.2 0.3 135 chr3R 4943595 intron Cdep + chr3R 4943662 intron Cdep + chr3R 4943730 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-440 1432 chr3R 4966002 4966036 chr3R 4966097 4966147 11 105 3.5 2.5 3.0 2.8 145 chr3R 4966002 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966147 intron CG1124 + chr3R_11_4965001 chr3R_4965001 RAL-440 1433 chr3R 4975925 4975966 chr3R 4976046 4976064 5 106 12.0 11.0 11.5 0.4 139 chr3R 4975925 intergenic not near genes chr3R 4975994 intergenic not near genes chr3R 4976064 intergenic not near genes chr3R_5_4975001 chr3R_4975001 RAL-440 1434 chr3R 4984282 4984321 chr3R 4984388 4984428 6 102 6.5 7.5 7.0 0.8 146 chr3R 4984282 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984355 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984428 intergenic CR43424 -,CG14662 - chr3R_6_4980001 chr3R_4980001 RAL-440 1435 chr3R 5045824 5045873 chr3R 5052945 5052995 HMS-Beagle 7 7115 2.5 2.5 2.5 2.0 7171 chr3R 5045824 3` UTR CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052995 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-440 1436 chr3R 5067962 5068004 chr3R 5073498 5073538 mdg3 11 5530 9.5 8.0 8.8 1.1 5576 chr3R 5067962 intergenic not near genes chr3R 5070750 intergenic not near genes chr3R 5073538 intergenic not near genes chr3R_11_5070001 chr3R_5070001 RAL-440 1437 chr3R 5133158 5133164 chr3R 5133261 5133268 4 110 6.5 6.5 6.5 0.5 110 chr3R 5133158 intergenic not near genes chr3R 5133213 intergenic not near genes chr3R 5133268 intergenic not near genes chr3R_4_5130001 chr3R_5130001 RAL-440 1438 chr3R 5158130 5158169 chr3R 5158236 5158237 7 101 5.5 3.5 4.5 1.3 107 chr3R 5158130 intron dpr16 + chr3R 5158184 intron dpr16 + chr3R 5158237 intron dpr16 + chr3R_7_5155001 chr3R_5155001 RAL-440 1439 chr3R 5206794 5206828 chr3R 5206956 5206973 7 156 16.0 13.0 14.5 0.5 179 chr3R 5206794 intron cno - chr3R 5206884 intron cno - chr3R 5206973 intron cno - chr3R_7_5205001 chr3R_5205001 RAL-440 1440 chr3R 5338381 5338425 chr3R 5343575 5343612 Rt1c 4 5193 5.0 6.5 5.8 0.6 5231 chr3R 5338381 intron mtd - chr3R 5340996 intron mtd - chr3R 5343612 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-440 1441 chr3R 5385971 5386000 chr3R 5386145 5386191 5 181 11.0 11.5 11.2 0.4 220 chr3R 5385971 intron kkv - chr3R 5386081 intron kkv - chr3R 5386191 intron kkv - chr3R_5_5385001 chr3R_5385001 RAL-440 1442 chr3R 5437942 5437976 chr3R 5438072 5438100 6 127 11.5 10.5 11.0 0.5 158 chr3R 5437942 intron CG14669 + chr3R 5438021 intron CG14669 + chr3R 5438100 intron CG14669 + chr3R_6_5435001 chr3R_5435001 RAL-440 1443 chr3R 5445940 5445985 chr3R 5452420 5452463 Burdock 7 6478 4.0 4.5 4.2 1.3 6523 chr3R 5445940 intron CG14669 + chr3R 5449202 intron CG14669 + chr3R 5452463 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-440 1444 chr3R 5497042 5497093 chr3R 5497916 5497943 6 874 31.0 18.0 24.5 0.2 901 chr3R 5497042 intron CG31547 - chr3R 5497492 intron CG31547 - chr3R 5497943 intron CG31547 - chr3R_6_5495001 chr3R_5495001 RAL-440 1445 chr3R 5627132 5627180 chr3R 5627562 5627594 7 425 5.5 13.0 9.2 0.7 462 chr3R 5627132 intergenic not near genes chr3R 5627363 intergenic CG31551 + chr3R 5627594 intergenic CG31551 + chr3R_7_5625001 chr3R_5625001 RAL-440 1446 chr3R 5726076 5726119 chr3R 5726257 5726285 6 178 6.0 5.0 5.5 0.9 209 chr3R 5726076 intergenic not near genes chr3R 5726180 intergenic not near genes chr3R 5726285 intergenic not near genes chr3R_6_5725001 chr3R_5725001 RAL-440 1447 chr3R 5746008 5746045 chr3R 5746264 5746287 pogo 6 250 2.5 6.0 4.2 1.2 279 chr3R 5746008 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-440 1448 chr3R 5746998 5747035 chr3R 5753204 5753237 diver 8 6202 5.0 4.0 4.5 1.5 6239 chr3R 5746998 intergenic Madm + chr3R 5750118 intergenic not near genes chr3R 5753237 intergenic CG2091 - chr3R_8_5750001 chr3R_5750001 RAL-440 1449 chr3R 5772359 5772395 chr3R 5772535 5772565 7 172 6.0 3.0 4.5 1.3 206 chr3R 5772359 intron CG2082 - chr3R 5772462 intron CG2082 - chr3R 5772565 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-440 1450 chr3R 5809104 5809133 chr3R 5809354 5809394 pogo 5 252 4.0 5.5 4.8 0.9 290 chr3R 5809104 3` UTR CG11000 + chr3R 5809249 3` UTR CG11000 + chr3R 5809394 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-440 1451 chr3R 5822365 5822408 chr3R 5823544 5823580 1360 4 1178 13.0 15.0 14.0 0.3 1215 chr3R 5822365 3` UTR CG2023 - chr3R 5822972 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-440 1452 chr3R 5846444 5846464 chr3R 5849907 5849922 4 3458 16.5 22.0 19.2 0.2 3478 chr3R 5846444 3` UTR CG1213 + chr3R 5848183 intergenic CG14676 + chr3R 5849922 3` UTR disp - chr3R_4_5845001 chr3R_5845001 RAL-440 1453 chr3R 5896966 5896999 chr3R 5897324 5897376 5 364 4.5 8.0 6.2 0.7 410 chr3R 5896966 intron CG34113 - chr3R 5897171 intron CG34113 - chr3R 5897376 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-440 1454 chr3R 5904102 5904126 chr3R 5904222 5904244 6 124 8.5 12.0 10.2 0.5 142 chr3R 5904102 intron CG34113 - chr3R 5904173 intron CG34113 - chr3R 5904244 intron CG34113 - chr3R_6_5900001 chr3R_5900001 RAL-440 1455 chr3R 5916055 5916087 chr3R 5916188 5916227 6 136 15.0 17.5 16.2 0.3 172 chr3R 5916055 intron CG34113 - chr3R 5916141 intron CG34113 - chr3R 5916227 intron CG34113 - chr3R_6_5915001 chr3R_5915001 RAL-440 1456 chr3R 5917472 5917499 chr3R 5917811 5917840 6 345 4.5 21.5 13.0 0.4 368 chr3R 5917472 intron CG34113 - chr3R 5917656 intron CG34113 - chr3R 5917840 intron CG34113 - chr3R_6_5915001 chr3R_5915001 RAL-440 1457 chr3R 5927560 5927589 chr3R 5927801 5927828 pogo 11 249 4.0 4.5 4.2 2.1 268 chr3R 5927560 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-440 1458 chr3R 5933690 5933714 chr3R 5934041 5934078 4 359 11.5 10.0 10.8 0.3 388 chr3R 5933690 intron CG34113 - chr3R 5933884 intron CG34113 - chr3R 5934078 intron CG34113 - chr3R_4_5930001 chr3R_5930001 RAL-440 1459 chr3R 5971217 5971249 chr3R 5971595 5971624 5 374 2.0 9.5 5.8 0.7 407 chr3R 5971217 intergenic not near genes chr3R 5971420 intergenic not near genes chr3R 5971624 intergenic not near genes chr3R_5_5970001 chr3R_5970001 RAL-440 1460 chr3R 6028178 6028219 chr3R 6028276 6028319 5 97 11.5 10.5 11.0 0.4 141 chr3R 6028178 intergenic not near genes chr3R 6028248 intergenic not near genes chr3R 6028319 intergenic not near genes chr3R_5_6025001 chr3R_6025001 RAL-440 1461 chr3R 6158519 6158540 chr3R 6167096 6167143 Tirant 5 8585 5.5 3.0 4.2 1.0 8624 chr3R 6158519 intergenic not near genes chr3R 6162831 intergenic not near genes chr3R 6167143 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-440 1462 chr3R 6175158 6175173 chr3R 6182450 6182460 HMS-Beagle2 4 7289 2.0 2.0 2.0 1.3 7302 chr3R 6175158 intergenic Osi1 + chr3R 6178809 intron CR45194 + chr3R 6182460 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-440 1463 chr3R 6175181 6175195 chr3R 6182446 6182479 HMS-Beagle2 5 7276 0.5 2.0 1.2 2.3 7298 chr3R 6175181 intergenic Osi1 + chr3R 6178830 intron CR45194 + chr3R 6182479 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-440 1464 chr3R 6206286 6206306 chr3R 6206510 6206513 BS 4 224 4.5 5.5 5.0 0.7 227 chr3R 6206286 exon Osi24 + chr3R 6206400 intron Osi24 + chr3R 6206513 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-440 1465 chr3R 6206309 6206316 chr3R 6206499 6206501 BS 4 198 4.0 4.5 4.2 0.8 192 chr3R 6206309 exon Osi24 + chr3R 6206405 intron Osi24 + chr3R 6206501 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-440 1466 chr3R 6408019 6408029 chr3R 6408132 6408140 4 126 6.5 8.0 7.2 0.5 121 chr3R 6408019 intron gpp + chr3R 6408080 intron gpp + chr3R 6408140 intron gpp + chr3R_4_6405001 chr3R_6405001 RAL-440 1467 chr3R 6428796 6428832 chr3R 6428910 6428946 12 117 5.0 3.0 4.0 2.4 150 chr3R 6428796 intron gpp + chr3R 6428871 intron gpp + chr3R 6428946 intron gpp + chr3R_12_6425001 chr3R_6425001 RAL-440 1468 chr3R 6461568 6461613 chr3R 6461657 6461709 16 96 4.5 2.0 3.2 3.8 141 chr3R 6461568 intergenic not near genes chr3R 6461638 intergenic not near genes chr3R 6461709 intergenic not near genes chr3R_16_6460001 chr3R_6460001 RAL-440 1469 chr3R 6523296 6523351 chr3R 6523692 6523721 5 391 6.0 9.5 7.8 0.6 425 chr3R 6523296 intergenic not near genes chr3R 6523508 intergenic not near genes chr3R 6523721 intergenic not near genes chr3R_5_6520001 chr3R_6520001 RAL-440 1470 chr3R 6532111 6532127 chr3R 6532491 6532511 4 383 8.0 8.5 8.2 0.4 400 chr3R 6532111 intron dpr11 - chr3R 6532311 intron dpr11 - chr3R 6532511 intron dpr11 - chr3R_4_6530001 chr3R_6530001 RAL-440 1471 chr3R 6550315 6550349 chr3R 6550408 6550437 4 88 9.5 10.0 9.8 0.4 122 chr3R 6550315 intron dpr11 - chr3R 6550376 intron dpr11 - chr3R 6550437 intron dpr11 - chr3R_4_6550001 chr3R_6550001 RAL-440 1472 chr3R 6639900 6639931 chr3R 6639994 6640005 7 87 1.5 1.0 1.2 3.2 105 chr3R 6639900 intergenic not near genes chr3R 6639952 intergenic not near genes chr3R 6640005 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-440 1473 chr3R 6655768 6655792 chr3R 6656037 6656084 6 282 7.5 5.0 6.2 0.8 316 chr3R 6655768 exon Taf1 + chr3R 6655926 3` UTR Taf1 + chr3R 6656084 intergenic Taf1 +,CG1307 - chr3R_6_6655001 chr3R_6655001 RAL-440 1474 chr3R 6663589 6663628 chr3R 6663683 6663716 6 85 12.0 11.0 11.5 0.5 127 chr3R 6663589 intron lab - chr3R 6663652 intron lab - chr3R 6663716 intron lab - chr3R_6_6660001 chr3R_6660001 RAL-440 1475 chr3R 6737518 6737527 chr3R 6739299 6739334 Doc 6 1796 1.0 3.5 2.2 1.9 1816 chr3R 6737518 intron pb - chr3R 6738426 intron pb - chr3R 6739334 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-440 1476 chr3R 6780437 6780482 chr3R 6780536 6780584 6 100 7.0 6.0 6.5 0.8 147 chr3R 6780437 intergenic not near genes chr3R 6780510 intergenic not near genes chr3R 6780584 intergenic not near genes chr3R_6_6780001 chr3R_6780001 RAL-440 1477 chr3R 6782430 6782468 chr3R 6782517 6782567 13 88 14.5 12.5 13.5 0.9 137 chr3R 6782430 intergenic not near genes chr3R 6782498 intergenic not near genes chr3R 6782567 intergenic not near genes chr3R_13_6780001 chr3R_6780001 RAL-440 1478 chr3R 6804187 6804216 chr3R 6804307 6804339 6 116 6.0 2.0 4.0 1.2 152 chr3R 6804187 intergenic not near genes chr3R 6804263 intergenic not near genes chr3R 6804339 intergenic not near genes chr3R_6_6800001 chr3R_6800001 RAL-440 1479 chr3R 6828004 6828038 chr3R 6828100 6828117 7 90 1.5 4.0 2.8 1.8 113 chr3R 6828004 intron Scr - chr3R 6828060 intron Scr - chr3R 6828117 intron Scr - chr3R_7_6825001 chr3R_6825001 RAL-440 1480 chr3R 6856367 6856391 chr3R 6856504 6856528 5 135 5.0 8.5 6.8 0.6 161 chr3R 6856367 intergenic not near genes chr3R 6856448 intergenic not near genes chr3R 6856528 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-440 1481 chr3R 6961181 6961202 chr3R 6961259 6961296 4 87 6.0 5.0 5.5 0.6 115 chr3R 6961181 intron Antp - chr3R 6961238 intron Antp - chr3R 6961296 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-440 1482 chr3R 7012188 7012230 chr3R 7012282 7012299 9 85 7.5 8.0 7.8 1.0 111 chr3R 7012188 intergenic not near genes chr3R 7012244 intergenic not near genes chr3R 7012299 intergenic not near genes chr3R_9_7010001 chr3R_7010001 RAL-440 1483 chr3R 7030692 7030723 chr3R 7030780 7030819 6 92 9.0 5.0 7.0 0.8 127 chr3R 7030692 intergenic not near genes chr3R 7030756 intergenic not near genes chr3R 7030819 intergenic not near genes chr3R_6_7030001 chr3R_7030001 RAL-440 1484 chr3R 7036755 7036783 chr3R 7036840 7036864 4 89 7.5 8.0 7.8 0.5 109 chr3R 7036755 intergenic not near genes chr3R 7036810 intergenic not near genes chr3R 7036864 intergenic not near genes chr3R_4_7035001 chr3R_7035001 RAL-440 1485 chr3R 7103909 7103932 chr3R 7104028 7104051 5 114 18.0 16.5 17.2 0.3 142 chr3R 7103909 intron Alh - chr3R 7103980 intron Alh - chr3R 7104051 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-440 1486 chr3R 7103933 7103958 chr3R 7104027 7104073 6 108 14.5 16.5 15.5 0.4 140 chr3R 7103933 intron Alh - chr3R 7104003 intron Alh - chr3R 7104073 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-440 1487 chr3R 7281048 7281077 chr3R 7281141 7281173 7 100 3.5 4.5 4.0 1.4 125 chr3R 7281048 intron rn - chr3R 7281110 intron rn - chr3R 7281173 intron rn - chr3R_7_7280001 chr3R_7280001 RAL-440 1488 chr3R 7320414 7320443 chr3R 7320522 7320551 6 107 6.5 11.5 9.0 0.6 137 chr3R 7320414 intergenic not near genes chr3R 7320482 intergenic not near genes chr3R 7320551 intergenic not near genes chr3R_6_7320001 chr3R_7320001 RAL-440 1489 chr3R 7386991 7387012 chr3R 7387104 7387129 5 115 8.5 6.0 7.2 0.6 138 chr3R 7386991 intergenic CR45560 + chr3R 7387060 intergenic CR45560 + chr3R 7387129 intergenic CR45560 + chr3R_5_7385001 chr3R_7385001 RAL-440 1490 chr3R 7396038 7396084 chr3R 7396153 7396172 11 108 4.0 2.5 3.2 2.6 134 chr3R 7396038 intergenic not near genes chr3R 7396105 intergenic not near genes chr3R 7396172 intergenic not near genes chr3R_11_7395001 chr3R_7395001 RAL-440 1491 chr3R 7396369 7396386 chr3R 7396476 7396495 5 116 3.0 7.5 5.2 0.8 126 chr3R 7396369 intergenic not near genes chr3R 7396432 intergenic not near genes chr3R 7396495 intergenic not near genes chr3R_5_7395001 chr3R_7395001 RAL-440 1492 chr3R 7437644 7437689 chr3R 7437930 7437961 6 275 10.0 5.5 7.8 0.7 317 chr3R 7437644 intergenic not near genes chr3R 7437802 intergenic not near genes chr3R 7437961 intergenic not near genes chr3R_6_7435001 chr3R_7435001 RAL-440 1493 chr3R 7438919 7438934 chr3R 7438991 7439016 4 85 12.0 11.5 11.8 0.3 97 chr3R 7438919 intergenic not near genes chr3R 7438968 intergenic not near genes chr3R 7439016 intergenic not near genes chr3R_4_7435001 chr3R_7435001 RAL-440 1494 chr3R 7447971 7448009 chr3R 7448069 7448100 10 93 6.0 7.5 6.8 1.3 129 chr3R 7447971 intergenic not near genes chr3R 7448036 intergenic not near genes chr3R 7448100 intergenic not near genes chr3R_10_7445001 chr3R_7445001 RAL-440 1495 chr3R 7461709 7461750 chr3R 7462276 7462300 6 554 14.0 9.0 11.5 0.5 591 chr3R 7461709 intergenic not near genes chr3R 7462004 intergenic not near genes chr3R 7462300 intergenic not near genes chr3R_6_7460001 chr3R_7460001 RAL-440 1496 chr3R 7507487 7507528 chr3R 7507623 7507668 6 130 13.5 9.5 11.5 0.5 181 chr3R 7507487 intergenic not near genes chr3R 7507578 intergenic not near genes chr3R 7507668 intergenic not near genes chr3R_6_7505001 chr3R_7505001 RAL-440 1497 chr3R 7509547 7509595 chr3R 7509673 7509708 11 120 9.0 6.5 7.8 1.2 161 chr3R 7509547 3` UTR alpha-Est8 - chr3R 7509628 3` UTR alpha-Est8 - chr3R 7509708 3` UTR alpha-Est8 - chr3R_11_7505001 chr3R_7505001 RAL-440 1498 chr3R 7548606 7548635 chr3R 7548687 7548705 5 83 11.5 11.0 11.2 0.4 99 chr3R 7548606 intron alpha-Est1 - chr3R 7548656 intron alpha-Est1 - chr3R 7548705 intron alpha-Est1 - chr3R_5_7545001 chr3R_7545001 RAL-440 1499 chr3R 7635659 7635681 chr3R 7635746 7635773 5 91 17.0 16.5 16.8 0.3 114 chr3R 7635659 intron CG34127 - chr3R 7635716 intron CG34127 - chr3R 7635773 intron CG34127 - chr3R_5_7635001 chr3R_7635001 RAL-440 1500 chr3R 7656996 7657047 chr3R 7657329 7657372 9 325 9.5 5.5 7.5 1.1 376 chr3R 7656996 intergenic not near genes chr3R 7657184 intergenic not near genes chr3R 7657372 intergenic not near genes chr3R_9_7655001 chr3R_7655001 RAL-440 1501 chr3R 7677909 7677947 chr3R 7678026 7678035 10 114 1.0 2.5 1.8 3.6 126 chr3R 7677909 intron Nlg1 + chr3R 7677972 intron Nlg1 + chr3R 7678035 intron Nlg1 + chr3R_10_7675001 chr3R_7675001 RAL-440 1502 chr3R 7684928 7684971 chr3R 7685255 7685280 4 323 7.5 12.0 9.8 0.4 352 chr3R 7684928 intron Nlg1 + chr3R 7685104 intron Nlg1 + chr3R 7685280 intron Nlg1 + chr3R_4_7685001 chr3R_7685001 RAL-440 1503 chr3R 7694558 7694610 chr3R 7713637 7713682 invader3 8 19075 0.0 2.5 1.2 3.6 19124 chr3R 7694558 3` UTR Nlg1 + chr3R 7704120 intergenic not near genes chr3R 7713682 intergenic not near genes chr3R_8_7700001 chr3R_7700001 RAL-440 1504 chr3R 7716264 7716305 chr3R 7716375 7716416 6 106 15.0 9.0 12.0 0.5 152 chr3R 7716264 intergenic not near genes chr3R 7716340 intergenic not near genes chr3R 7716416 intergenic not near genes chr3R_6_7715001 chr3R_7715001 RAL-440 1505 chr3R 7729450 7729495 chr3R 7737407 7737438 Stalker2 18 7947 6.0 4.5 5.2 2.9 7988 chr3R 7729450 intergenic not near genes chr3R 7733444 intergenic not near genes chr3R 7737438 intergenic not near genes chr3R_18_7730001 chr3R_7730001 RAL-440 1506 chr3R 7822146 7822186 chr3R 7822287 7822327 7 137 10.0 16.0 13.0 0.5 181 chr3R 7822146 intron CG34384 + chr3R 7822236 intron CG34384 + chr3R 7822327 intron CG34384 + chr3R_7_7820001 chr3R_7820001 RAL-440 1507 chr3R 7830311 7830331 chr3R 7830452 7830468 6 152 6.0 3.0 4.5 1.1 157 chr3R 7830311 intron CG34384 + chr3R 7830390 intron CG34384 + chr3R 7830468 intron CG34384 + chr3R_6_7830001 chr3R_7830001 RAL-440 1508 chr3R 7849652 7849673 chr3R 7850824 7850852 1360 7 1177 2.0 8.0 5.0 1.2 1200 chr3R 7849652 intron CG34384 + chr3R 7850252 intron CG34384 + chr3R 7850852 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-440 1509 chr3R 7857625 7857668 chr3R 7857726 7857744 9 92 4.0 5.0 4.5 1.6 119 chr3R 7857625 3` UTR CG17816 - chr3R 7857684 3` UTR CG17816 - chr3R 7857744 3` UTR CG17816 - chr3R_9_7855001 chr3R_7855001 RAL-440 1510 chr3R 7883137 7883147 chr3R 7883228 7883245 4 96 9.5 11.0 10.2 0.4 108 chr3R 7883137 intron CG17816 - chr3R 7883191 intron CG17816 - chr3R 7883245 intron CG17816 - chr3R_4_7880001 chr3R_7880001 RAL-440 1511 chr3R 7948429 7948467 chr3R 7948525 7948529 5 81 9.0 6.5 7.8 0.6 100 chr3R 7948429 intron dsx - chr3R 7948479 intron dsx - chr3R 7948529 intron dsx - chr3R_5_7945001 chr3R_7945001 RAL-440 1512 chr3R 7955931 7955967 chr3R 7956017 7956063 4 92 10.0 9.0 9.5 0.4 132 chr3R 7955931 intron dsx - chr3R 7955997 intron dsx - chr3R 7956063 intron dsx - chr3R_4_7955001 chr3R_7955001 RAL-440 1513 chr3R 7965315 7965341 chr3R 7965412 7965437 6 102 10.5 9.5 10.0 0.5 122 chr3R 7965315 intron dsx - chr3R 7965376 intron dsx - chr3R 7965437 intron dsx - chr3R_6_7965001 chr3R_7965001 RAL-440 1514 chr3R 7973303 7973343 chr3R 7974377 7974403 1360 5 1076 2.0 2.5 2.2 1.6 1100 chr3R 7973303 intergenic not near genes chr3R 7973853 intergenic not near genes chr3R 7974403 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-440 1515 chr3R 8090265 8090301 chr3R 8090457 8090498 12 194 5.5 14.5 10.0 1.1 233 chr3R 8090265 5` UTR CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090498 intergenic CR44330 + chr3R_12_8090001 chr3R_8090001 RAL-440 1516 chr3R 8094397 8094434 chr3R 8099720 8099759 Transpac 8 5318 4.5 4.5 4.5 1.5 5362 chr3R 8094397 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099759 intron CG7900 + chr3R_8_8095001 chr3R_8095001 RAL-440 1517 chr3R 8101769 8101776 chr3R 8104853 8104880 G2 4 3096 6.5 2.0 4.2 0.8 3111 chr3R 8101769 exon CG7900 + chr3R 8103324 intron CG7900 + chr3R 8104880 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-440 1518 chr3R 8182638 8182676 chr3R 8182750 8182776 5 108 11.5 13.0 12.2 0.4 138 chr3R 8182638 intergenic not near genes chr3R 8182707 intergenic not near genes chr3R 8182776 intergenic not near genes chr3R_5_8180001 chr3R_8180001 RAL-440 1519 chr3R 8183494 8183506 chr3R 8183601 8183609 4 106 11.5 13.5 12.5 0.3 115 chr3R 8183494 intergenic not near genes chr3R 8183552 intergenic not near genes chr3R 8183609 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-440 1520 chr3R 8183509 8183534 chr3R 8183591 8183634 4 97 10.0 14.0 12.0 0.3 125 chr3R 8183509 intergenic not near genes chr3R 8183572 intergenic not near genes chr3R 8183634 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-440 1521 chr3R 8363214 8363239 chr3R 8363283 8363306 7 71 14.0 12.5 13.2 0.5 92 chr3R 8363214 exon CG7963 + chr3R 8363260 exon CG7963 + chr3R 8363306 exon CG7963 + chr3R_7_8360001 chr3R_8360001 RAL-440 1522 chr3R 8393570 8393605 chr3R 8393673 8393709 5 96 0.5 6.0 3.2 1.2 139 chr3R 8393570 intron CG45263 - chr3R 8393640 intron CG45263 - chr3R 8393709 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-440 1523 chr3R 8402996 8403008 chr3R 8412179 8412185 roo 4 9182 5.5 6.0 5.8 0.6 9189 chr3R 8402996 intron CG45263 - chr3R 8407590 intron CG45263 - chr3R 8412185 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-440 1524 chr3R 8403012 8403039 chr3R 8412176 8412207 roo 5 9174 3.0 5.5 4.2 1.0 9195 chr3R 8403012 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-440 1525 chr3R 8449827 8449851 chr3R 8449899 8449917 5 74 7.0 9.5 8.2 0.5 90 chr3R 8449827 intron CG45263 - chr3R 8449872 intron CG45263 - chr3R 8449917 intron CG45263 - chr3R_5_8445001 chr3R_8445001 RAL-440 1526 chr3R 8485326 8485361 chr3R 8485426 8485461 9 95 11.5 11.5 11.5 0.7 135 chr3R 8485326 intergenic not near genes chr3R 8485394 intergenic not near genes chr3R 8485461 intergenic not near genes chr3R_9_8485001 chr3R_8485001 RAL-440 1527 chr3R 8570458 8570483 chr3R 8575114 8575130 HMS-Beagle 4 4652 6.0 3.0 4.5 0.7 4672 chr3R 8570458 intergenic not near genes chr3R 8572794 intergenic not near genes chr3R 8575130 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-440 1528 chr3R 8587588 8587633 chr3R 8587837 8587852 8 241 10.0 8.5 9.2 0.8 264 chr3R 8587588 intron 5-HT2B + chr3R 8587720 intron 5-HT2B + chr3R 8587852 intron 5-HT2B + chr3R_8_8585001 chr3R_8585001 RAL-440 1529 chr3R 8590066 8590095 chr3R 8590371 8590402 5 310 10.5 9.0 9.8 0.5 336 chr3R 8590066 intron 5-HT2B + chr3R 8590234 intron 5-HT2B + chr3R 8590402 intron 5-HT2B + chr3R_5_8590001 chr3R_8590001 RAL-440 1530 chr3R 8601753 8601798 chr3R 8610920 8610951 roo 9 9155 5.5 1.5 3.5 2.0 9198 chr3R 8601753 intron 5-HT2B + chr3R 8606352 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-440 1531 chr3R 8636937 8636957 chr3R 8637236 8637280 8 309 13.0 11.0 12.0 0.6 343 chr3R 8636937 intergenic not near genes chr3R 8637108 intergenic not near genes chr3R 8637280 intergenic not near genes chr3R_8_8635001 chr3R_8635001 RAL-440 1532 chr3R 8671393 8671438 chr3R 8671489 8671535 7 97 5.0 5.5 5.2 1.1 142 chr3R 8671393 intron CG8036 + chr3R 8671464 intron CG8036 + chr3R 8671535 intron CG8036 + chr3R_7_8670001 chr3R_8670001 RAL-440 1533 chr3R 8707355 8707387 chr3R 8709805 8709817 jockey 4 2446 2.0 5.5 3.8 0.8 2462 chr3R 8707355 intergenic not near genes chr3R 8708586 intergenic not near genes chr3R 8709817 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-440 1534 chr3R 8740238 8740271 chr3R 8740334 8740364 6 97 3.0 3.5 3.2 1.4 126 chr3R 8740238 intron CG9801 - chr3R 8740301 intron CG9801 - chr3R 8740364 intron CG9801 - chr3R_6_8740001 chr3R_8740001 RAL-440 1535 chr3R 8743177 8743217 chr3R 8743270 8743301 9 89 18.5 14.0 16.2 0.5 124 chr3R 8743177 intron CG9801 - chr3R 8743239 intron CG9801 - chr3R 8743301 intron CG9801 - chr3R_9_8740001 chr3R_8740001 RAL-440 1536 chr3R 8744544 8744557 chr3R 8745136 8745146 6 591 4.5 8.0 6.2 0.8 602 chr3R 8744544 intron CG9801 - chr3R 8744845 intron CG9801 - chr3R 8745146 intron CG9801 - chr3R_6_8740001 chr3R_8740001 RAL-440 1537 chr3R 8745749 8745775 chr3R 8745864 8745905 14 121 3.0 3.0 3.0 3.5 156 chr3R 8745749 intron CG9801 - chr3R 8745827 intron CG9801 - chr3R 8745905 intron CG9801 - chr3R_14_8745001 chr3R_8745001 RAL-440 1538 chr3R 8756267 8756313 chr3R 8756363 8756395 12 88 2.0 3.0 2.5 3.4 128 chr3R 8756267 intron,intron CG11768 -,CG34135 - chr3R 8756331 intron,intron CG11768 -,CG34135 - chr3R 8756395 intron,intron CG11768 -,CG34135 - chr3R_12_8755001 chr3R_8755001 RAL-440 1539 chr3R 8867705 8867732 chr3R 8867821 8867845 9 117 11.5 4.5 8.0 1.0 140 chr3R 8867705 intron pyd - chr3R 8867775 intron pyd - chr3R 8867845 intron pyd - chr3R_9_8865001 chr3R_8865001 RAL-440 1540 chr3R 8882055 8882076 chr3R 8882164 8882185 4 110 9.5 12.5 11.0 0.3 130 chr3R 8882055 intron pyd - chr3R 8882120 intron pyd - chr3R 8882185 intron pyd - chr3R_4_8880001 chr3R_8880001 RAL-440 1541 chr3R 8894865 8894902 chr3R 8896026 8896052 1360 11 1166 1.5 4.0 2.8 2.9 1187 chr3R 8894865 intron pyd - chr3R 8895458 intron pyd - chr3R 8896052 intron pyd - chr3R_11_8895001 chr3R_8895001 RAL-440 1542 chr3R 9044008 9044032 chr3R 9044105 9044129 5 91 11.0 11.0 11.0 0.4 121 chr3R 9044008 intron Nmdmc - chr3R 9044068 intron Nmdmc - chr3R 9044129 intron Nmdmc - chr3R_5_9040001 chr3R_9040001 RAL-440 1543 chr3R 9055218 9055233 chr3R 9055327 9055344 5 105 13.0 9.0 11.0 0.4 126 chr3R 9055218 intron Kdm2 + chr3R 9055281 intron Kdm2 + chr3R 9055344 intron Kdm2 + chr3R_5_9055001 chr3R_9055001 RAL-440 1544 chr3R 9055235 9055257 chr3R 9055326 9055338 7 97 12.0 9.0 10.5 0.6 103 chr3R 9055235 intron Kdm2 + chr3R 9055286 intron Kdm2 + chr3R 9055338 intron Kdm2 + chr3R_7_9055001 chr3R_9055001 RAL-440 1545 chr3R 9069469 9069515 chr3R 9069568 9069607 7 94 14.0 15.5 14.8 0.4 138 chr3R 9069469 3` UTR pum - chr3R 9069538 3` UTR pum - chr3R 9069607 3` UTR pum - chr3R_7_9065001 chr3R_9065001 RAL-440 1546 chr3R 9083136 9083170 chr3R 9083230 9083254 13 93 1.0 4.0 2.5 3.7 118 chr3R 9083136 intron pum - chr3R 9083195 intron pum - chr3R 9083254 intron pum - chr3R_13_9080001 chr3R_9080001 RAL-440 1547 chr3R 9099439 9099482 chr3R 9099543 9099569 4 99 1.5 4.0 2.8 1.1 130 chr3R 9099439 intron pum - chr3R 9099504 intron pum - chr3R 9099569 intron pum - chr3R_4_9095001 chr3R_9095001 RAL-440 1548 chr3R 9101828 9101869 chr3R 9101936 9101969 17 111 4.0 3.5 3.8 3.5 141 chr3R 9101828 intron pum - chr3R 9101898 intron pum - chr3R 9101969 intron pum - chr3R_17_9100001 chr3R_9100001 RAL-440 1549 chr3R 9141123 9141172 chr3R 9141227 9141275 8 96 11.5 14.5 13.0 0.6 152 chr3R 9141123 intron pum - chr3R 9141199 intron pum - chr3R 9141275 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-440 1550 chr3R 9149437 9149456 chr3R 9149526 9149540 4 93 7.5 5.5 6.5 0.5 103 chr3R 9149437 intron pum - chr3R 9149488 intron pum - chr3R 9149540 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-440 1551 chr3R 9204251 9204277 chr3R 9204337 9204375 8 87 13.0 9.5 11.2 0.7 124 chr3R 9204251 intron pum - chr3R 9204313 intron pum - chr3R 9204375 intron pum - chr3R_8_9200001 chr3R_9200001 RAL-440 1552 chr3R 9207486 9207516 chr3R 9208103 9208123 5 620 11.5 8.0 9.8 0.5 637 chr3R 9207486 intron pum - chr3R 9207804 intron pum - chr3R 9208123 intron pum - chr3R_5_9205001 chr3R_9205001 RAL-440 1553 chr3R 9224790 9224797 chr3R 9224933 9224950 6 152 3.5 10.0 6.8 0.8 160 chr3R 9224790 intron pum - chr3R 9224870 intron pum - chr3R 9224950 intron pum - chr3R_6_9220001 chr3R_9220001 RAL-440 1554 chr3R 9278785 9278808 chr3R 9284046 9284073 Rt1a 10 5269 5.5 8.5 7.0 1.2 5288 chr3R 9278785 intergenic not near genes chr3R 9281429 intergenic not near genes chr3R 9284073 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-440 1555 chr3R 9303110 9303143 chr3R 9303192 9303206 5 70 6.0 6.5 6.2 0.7 96 chr3R 9303110 intron CG8861 - chr3R 9303158 intron CG8861 - chr3R 9303206 intron CG8861 - chr3R_5_9300001 chr3R_9300001 RAL-440 1556 chr3R 9319574 9319602 chr3R 9320005 9320048 jockey 10 447 2.5 4.5 3.5 2.2 474 chr3R 9319574 intron CG8861 - chr3R 9319811 intron CG8861 - chr3R 9320048 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-440 1557 chr3R 9337406 9337449 chr3R 9337525 9337569 8 121 7.5 9.5 8.5 0.8 163 chr3R 9337406 3` UTR CG8121 + chr3R 9337488 intergenic CG8121 + chr3R 9337569 intergenic CG8121 + chr3R_8_9335001 chr3R_9335001 RAL-440 1558 chr3R 9347605 9347655 chr3R 9347722 9347772 6 114 14.0 14.5 14.2 0.4 167 chr3R 9347605 intron CG45050 + chr3R 9347688 intron CG45050 + chr3R 9347772 intron CG45050 + chr3R_6_9345001 chr3R_9345001 RAL-440 1559 chr3R 9361805 9361847 chr3R 9362065 9362093 pogo 5 254 1.0 3.5 2.2 1.6 288 chr3R 9361805 3` UTR CG45050 + chr3R 9361949 3` UTR CG45050 + chr3R 9362093 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-440 1560 chr3R 9376874 9376918 chr3R 9385348 9385371 4 8461 6.0 9.0 7.5 0.5 8497 chr3R 9376874 intron FER - chr3R 9381122 intron FER - chr3R 9385371 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-440 1561 chr3R 9382799 9382849 chr3R 9382943 9382989 5 138 0.5 1.0 0.8 2.8 190 chr3R 9382799 intron FER - chr3R 9382894 intron FER - chr3R 9382989 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-440 1562 chr3R 9447438 9447447 chr3R 9447548 9447560 4 115 8.5 6.0 7.2 0.5 122 chr3R 9447438 intron ps + chr3R 9447499 intron ps + chr3R 9447560 intron ps + chr3R_4_9445001 chr3R_9445001 RAL-440 1563 chr3R 9601452 9601491 chr3R 9601580 9601624 6 130 10.0 11.0 10.5 0.5 172 chr3R 9601452 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601624 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-440 1564 chr3R 9647488 9647533 chr3R 9647752 9647752 5 256 15.0 10.0 12.5 0.4 264 chr3R 9647488 intron Dh44 + chr3R 9647620 intron Dh44 + chr3R 9647752 intron Dh44 + chr3R_5_9645001 chr3R_9645001 RAL-440 1565 chr3R 9699966 9700001 chr3R 9700061 9700095 1360 5 97 10.0 14.5 12.2 0.4 129 chr3R 9699966 intron Unc-115a - chr3R 9700030 intron Unc-115a - chr3R 9700095 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-440 1566 chr3R 9702243 9702294 chr3R 9702337 9702364 7 87 7.5 6.5 7.0 0.9 121 chr3R 9702243 intron Unc-115a - chr3R 9702304 intron Unc-115a - chr3R 9702364 intron Unc-115a - chr3R_7_9700001 chr3R_9700001 RAL-440 1567 chr3R 9891444 9891480 chr3R 9891604 9891620 8 150 7.0 8.5 7.8 0.9 176 chr3R 9891444 intron Glut4EF + chr3R 9891532 intron Glut4EF + chr3R 9891620 intron Glut4EF + chr3R_8_9890001 chr3R_9890001 RAL-440 1568 chr3R 9898615 9898819 chr3R 9898698 9898908 9 97 10.5 8.0 9.2 0.9 293 chr3R 9898615 intron Glut4EF + chr3R 9898762 intron Glut4EF + chr3R 9898908 intron Glut4EF + chr3R_9_9895001 chr3R_9895001 RAL-440 1569 chr3R 10099915 10099942 chr3R 10100000 10100033 4 89 9.5 13.5 11.5 0.3 118 chr3R 10099915 5` UTR CR43459 + chr3R 10099974 5` UTR CR43459 + chr3R 10100033 5` UTR,5` UTR CR43459 +,mir-277 + chr3R_4_10095001 chr3R_10095001 RAL-440 1570 chr3R 10158489 10158518 chr3R 10158568 10158620 9 95 9.5 6.5 8.0 1.0 131 chr3R 10158489 3` UTR Invadolysin + chr3R 10158554 3` UTR Invadolysin + chr3R 10158620 3` UTR Invadolysin + chr3R_9_10155001 chr3R_10155001 RAL-440 1571 chr3R 10231777 10231809 chr3R 10237367 10237372 mdg3 9 5579 1.5 2.0 1.8 3.2 5595 chr3R 10231777 intron CG42795 + chr3R 10234574 intron CG42795 + chr3R 10237372 intron CG42795 + chr3R_9_10230001 chr3R_10230001 RAL-440 1572 chr3R 10277129 10277150 chr3R 10277215 10277248 7 92 5.5 5.0 5.2 1.1 119 chr3R 10277129 intron CG43143 + chr3R 10277188 intron CG43143 + chr3R 10277248 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-440 1573 chr3R 10423482 10423505 chr3R 10423552 10423601 5 89 10.0 10.0 10.0 0.5 119 chr3R 10423482 intergenic not near genes chr3R 10423542 intergenic not near genes chr3R 10423601 intergenic not near genes chr3R_5_10420001 chr3R_10420001 RAL-440 1574 chr3R 10531861 10531898 chr3R 10531953 10531972 6 86 10.5 9.0 9.8 0.6 111 chr3R 10531861 intron hth - chr3R 10531916 intron hth - chr3R 10531972 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-440 1575 chr3R 10593428 10593454 chr3R 10593516 10593558 4 91 14.0 11.5 12.8 0.3 130 chr3R 10593428 intron hth - chr3R 10593493 intron hth - chr3R 10593558 exon hth - chr3R_4_10590001 chr3R_10590001 RAL-440 1576 chr3R 10594574 10594611 chr3R 10594677 10594710 4 102 12.5 12.5 12.5 0.3 136 chr3R 10594574 intron hth - chr3R 10594642 intron hth - chr3R 10594710 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-440 1577 chr3R 10732317 10732342 chr3R 10733197 10733228 7 881 13.5 15.0 14.2 0.5 911 chr3R 10732317 intergenic not near genes chr3R 10732772 intergenic not near genes chr3R 10733228 intergenic not near genes chr3R_7_10730001 chr3R_10730001 RAL-440 1578 chr3R 10745428 10745447 chr3R 10745517 10745527 6 93 8.0 10.0 9.0 0.6 99 chr3R 10745428 intron TkR86C - chr3R 10745478 intron TkR86C - chr3R 10745527 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-440 1579 chr3R 10777860 10777897 chr3R 10777959 10778000 5 97 7.5 7.0 7.2 0.6 140 chr3R 10777860 intergenic CG45076 -,fau -,CG45078 - chr3R 10777930 intergenic not near genes chr3R 10778000 intergenic not near genes chr3R_5_10775001 chr3R_10775001 RAL-440 1580 chr3R 10817234 10817248 chr3R 10817311 10817350 5 94 7.5 6.0 6.8 0.6 116 chr3R 10817234 3` UTR CG4089 + chr3R 10817292 3` UTR CG4089 + chr3R 10817350 3` UTR CG4089 + chr3R_5_10815001 chr3R_10815001 RAL-440 1581 chr3R 10904889 10904934 chr3R 10905113 10905152 6 220 7.5 4.5 6.0 0.9 263 chr3R 10904889 intergenic not near genes chr3R 10905020 intergenic not near genes chr3R 10905152 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-440 1582 chr3R 10910980 10911024 chr3R 10911116 10911157 6 131 10.5 14.0 12.2 0.5 177 chr3R 10910980 intergenic not near genes chr3R 10911068 intergenic not near genes chr3R 10911157 intergenic not near genes chr3R_6_10910001 chr3R_10910001 RAL-440 1583 chr3R 10919671 10919708 chr3R 10919762 10919781 11 85 2.5 2.0 2.2 3.4 110 chr3R 10919671 intergenic not near genes chr3R 10919726 intergenic not near genes chr3R 10919781 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-440 1584 chr3R 10920049 10920078 chr3R 10920123 10920171 11 90 5.0 3.0 4.0 2.2 122 chr3R 10920049 intergenic not near genes chr3R 10920110 intergenic not near genes chr3R 10920171 intergenic not near genes chr3R_11_10920001 chr3R_10920001 RAL-440 1585 chr3R 11085476 11085490 chr3R 11085538 11085551 4 69 3.0 1.0 2.0 1.3 75 chr3R 11085476 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085551 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-440 1586 chr3R 11102328 11102353 chr3R 11102406 11102407 6 78 6.0 4.5 5.2 1.0 79 chr3R 11102328 intergenic not near genes chr3R 11102368 intergenic not near genes chr3R 11102407 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-440 1587 chr3R 11120490 11120517 chr3R 11120593 11120620 5 97 5.0 9.5 7.2 0.6 130 chr3R 11120490 intergenic not near genes chr3R 11120555 intergenic not near genes chr3R 11120620 intergenic not near genes chr3R_5_11120001 chr3R_11120001 RAL-440 1588 chr3R 11149857 11149903 chr3R 11149965 11150008 5 107 5.5 3.5 4.5 0.9 151 chr3R 11149857 intergenic not near genes chr3R 11149932 intergenic not near genes chr3R 11150008 intergenic not near genes chr3R_5_11145001 chr3R_11145001 RAL-440 1589 chr3R 11257515 11257530 chr3R 11257580 11257620 4 76 10.5 12.5 11.5 0.3 105 chr3R 11257515 intergenic not near genes chr3R 11257568 intergenic not near genes chr3R 11257620 intergenic not near genes chr3R_4_11255001 chr3R_11255001 RAL-440 1590 chr3R 11406302 11406319 chr3R 11406381 11406407 4 84 7.0 5.0 6.0 0.6 105 chr3R 11406302 3` UTR pros + chr3R 11406354 3` UTR pros + chr3R 11406407 3` UTR pros + chr3R_4_11405001 chr3R_11405001 RAL-440 1591 chr3R 11455564 11455608 chr3R 11455707 11455754 12 142 11.5 9.5 10.5 1.0 190 chr3R 11455564 intron,intron CG17230 +,PGRP-LB - chr3R 11455659 intron,intron CG17230 +,PGRP-LB - chr3R 11455754 intron,intron CG17230 +,PGRP-LB - chr3R_12_11455001 chr3R_11455001 RAL-440 1592 chr3R 11476936 11476966 chr3R 11477058 11477076 6 119 4.0 2.5 3.2 1.4 140 chr3R 11476936 intergenic not near genes chr3R 11477006 intergenic not near genes chr3R 11477076 intergenic not near genes chr3R_6_11475001 chr3R_11475001 RAL-440 1593 chr3R 11484699 11484745 chr3R 11484817 11484869 9 107 9.0 9.0 9.0 0.9 170 chr3R 11484699 intergenic not near genes chr3R 11484784 intergenic not near genes chr3R 11484869 intergenic not near genes chr3R_9_11480001 chr3R_11480001 RAL-440 1594 chr3R 11518804 11518847 chr3R 11518913 11518926 4 90 13.0 9.0 11.0 0.3 122 chr3R 11518804 intergenic not near genes chr3R 11518865 intergenic not near genes chr3R 11518926 intergenic not near genes chr3R_4_11515001 chr3R_11515001 RAL-440 1595 chr3R 11537511 11537527 chr3R 11537598 11537628 5 95 11.0 9.5 10.2 0.4 117 chr3R 11537511 intron dpr4 - chr3R 11537570 intron dpr4 - chr3R 11537628 intron dpr4 - chr3R_5_11535001 chr3R_11535001 RAL-440 1596 chr3R 11571805 11571847 chr3R 11571912 11571963 11 108 5.5 1.5 3.5 2.4 158 chr3R 11571805 exon Mrp4 + chr3R 11571884 intron Mrp4 + chr3R 11571963 intron Mrp4 + chr3R_11_11570001 chr3R_11570001 RAL-440 1597 chr3R 11583573 11583612 chr3R 11583665 11583684 10 90 10.0 8.0 9.0 1.0 111 chr3R 11583573 intron wkd + chr3R 11583628 intron wkd + chr3R 11583684 intron wkd + chr3R_10_11580001 chr3R_11580001 RAL-440 1598 chr3R 11589765 11589791 chr3R 11589866 11589905 6 104 3.5 6.5 5.0 1.0 140 chr3R 11589765 exon CG6791 - chr3R 11589835 5` UTR CG6791 - chr3R 11589905 5` UTR CG6791 - chr3R_6_11585001 chr3R_11585001 RAL-440 1599 chr3R 11694720 11694752 chr3R 11694829 11694843 8 107 2.0 0.5 1.2 3.6 123 chr3R 11694720 intergenic Fer3 - chr3R 11694782 intergenic Fer3 - chr3R 11694843 intergenic not near genes chr3R_8_11690001 chr3R_11690001 RAL-440 1600 chr3R 11710201 11710226 chr3R 11710282 11710312 4 79 9.0 8.5 8.8 0.4 111 chr3R 11710201 intergenic not near genes chr3R 11710256 intergenic not near genes chr3R 11710312 intergenic not near genes chr3R_4_11710001 chr3R_11710001 RAL-440 1601 chr3R 11830332 11830358 chr3R 11830436 11830462 7 101 3.5 3.5 3.5 1.6 130 chr3R 11830332 intron CG6959 - chr3R 11830397 intron CG6959 - chr3R 11830462 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-440 1602 chr3R 11841059 11841093 chr3R 11846252 11846279 BS 14 5196 2.0 2.0 2.0 4.7 5220 chr3R 11841059 intron CG6959 - chr3R 11843669 intron CG6959 - chr3R 11846279 intron CG6959 - chr3R_14_11840001 chr3R_11840001 RAL-440 1603 chr3R 11853420 11853467 chr3R 11853585 11853634 8 165 9.0 14.0 11.5 0.6 214 chr3R 11853420 intron CG6959 - chr3R 11853527 intron CG6959 - chr3R 11853634 intron CG6959 - chr3R_8_11850001 chr3R_11850001 RAL-440 1604 chr3R 11853750 11853797 chr3R 11853875 11853918 6 124 17.0 10.5 13.8 0.4 168 chr3R 11853750 intron CG6959 - chr3R 11853834 intron CG6959 - chr3R 11853918 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-440 1605 chr3R 11914356 11914404 chr3R 11914461 11914497 4 101 6.0 12.0 9.0 0.4 141 chr3R 11914356 intron Cad87A - chr3R 11914426 intron Cad87A - chr3R 11914497 intron Cad87A - chr3R_4_11910001 chr3R_11910001 RAL-440 1606 chr3R 11965178 11965214 chr3R 11965421 11965453 10 249 5.5 8.5 7.0 1.2 275 chr3R 11965178 3` UTR CG12213 - chr3R 11965316 3` UTR CG12213 - chr3R 11965453 exon CG12213 - chr3R_10_11965001 chr3R_11965001 RAL-440 1607 chr3R 12022864 12022916 chr3R 12025061 12025111 pogo 16 2193 2.5 3.0 2.8 4.2 2247 chr3R 12022864 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025111 intergenic not near genes chr3R_16_12020001 chr3R_12020001 RAL-440 1608 chr3R 12118815 12118825 chr3R 12118908 12118914 5 94 6.0 9.0 7.5 0.6 99 chr3R 12118815 intergenic not near genes chr3R 12118864 intergenic not near genes chr3R 12118914 intergenic not near genes chr3R_5_12115001 chr3R_12115001 RAL-440 1609 chr3R 12137924 12137953 chr3R 12138007 12138008 6 81 9.0 8.5 8.8 0.6 84 chr3R 12137924 intergenic not near genes chr3R 12137966 intergenic not near genes chr3R 12138008 intergenic not near genes chr3R_6_12135001 chr3R_12135001 RAL-440 1610 chr3R 12156794 12157071 chr3R 12156880 12157167 4 94 10.0 13.0 11.5 0.3 373 chr3R 12156794 intron dpr15 - chr3R 12156980 intron dpr15 - chr3R 12157167 intron dpr15 - chr3R_4_12155001 chr3R_12155001 RAL-440 1611 chr3R 12157090 12157103 chr3R 12157186 12157199 5 95 6.0 10.0 8.0 0.6 109 chr3R 12157090 intron dpr15 - chr3R 12157144 intron dpr15 - chr3R 12157199 intron dpr15 - chr3R_5_12155001 chr3R_12155001 RAL-440 1612 chr3R 12211657 12211683 chr3R 12211741 12211761 7 92 14.0 16.0 15.0 0.4 104 chr3R 12211657 intergenic not near genes chr3R 12211709 intergenic not near genes chr3R 12211761 intergenic not near genes chr3R_7_12210001 chr3R_12210001 RAL-440 1613 chr3R 12214350 12214358 chr3R 12214445 12214452 4 93 7.0 2.5 4.8 0.7 102 chr3R 12214350 3` UTR CG4848 - chr3R 12214401 3` UTR CG4848 - chr3R 12214452 3` UTR CG4848 - chr3R_4_12210001 chr3R_12210001 RAL-440 1614 chr3R 12350440 12350469 chr3R 12350526 12350570 5 92 8.5 12.0 10.2 0.4 130 chr3R 12350440 exon CG10038 - chr3R 12350505 5` UTR CG10038 - chr3R 12350570 5` UTR CG10038 - chr3R_5_12350001 chr3R_12350001 RAL-440 1615 chr3R 12364745 12364771 chr3R 12364856 12364875 4 109 6.5 7.0 6.8 0.5 130 chr3R 12364745 intergenic GstD10 -,Tim17a1 - chr3R 12364810 3` UTR GstD10 - chr3R 12364875 3` UTR GstD10 - chr3R_4_12360001 chr3R_12360001 RAL-440 1616 chr3R 12376395 12376419 chr3R 12376481 12376513 7 96 8.0 5.5 6.8 0.9 118 chr3R 12376395 exon GstD5 + chr3R 12376454 3` UTR GstD5 + chr3R 12376513 3` UTR GstD5 + chr3R_7_12375001 chr3R_12375001 RAL-440 1617 chr3R 12441063 12441098 chr3R 12441147 12441190 8 90 10.5 8.0 9.2 0.8 127 chr3R 12441063 intron Desat1 + chr3R 12441126 intron Desat1 + chr3R 12441190 intron Desat1 + chr3R_8_12440001 chr3R_12440001 RAL-440 1618 chr3R 12516066 12516092 chr3R 12516172 12516187 4 106 3.5 8.5 6.0 0.6 121 chr3R 12516066 intron Octbeta3R - chr3R 12516126 intron Octbeta3R - chr3R 12516187 intron Octbeta3R - chr3R_4_12515001 chr3R_12515001 RAL-440 1619 chr3R 12535092 12535131 chr3R 12535188 12535228 6 98 7.5 4.5 6.0 0.9 136 chr3R 12535092 intron Octbeta3R - chr3R 12535160 intron Octbeta3R - chr3R 12535228 intron Octbeta3R - chr3R_6_12535001 chr3R_12535001 RAL-440 1620 chr3R 12615463 12615497 chr3R 12615712 12615730 4 246 13.0 6.0 9.5 0.4 267 chr3R 12615463 intergenic not near genes chr3R 12615596 intergenic not near genes chr3R 12615730 intergenic not near genes chr3R_4_12615001 chr3R_12615001 RAL-440 1621 chr3R 12666785 12666797 chr3R 12666917 12666930 4 137 12.5 15.5 14.0 0.3 145 chr3R 12666785 intron CG14395 + chr3R 12666858 intron CG14395 + chr3R 12666930 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-440 1622 chr3R 12729537 12729551 chr3R 12729640 12729669 5 117 12.5 8.0 10.2 0.4 132 chr3R 12729537 intergenic not near genes chr3R 12729603 intergenic not near genes chr3R 12729669 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-440 1623 chr3R 12733485 12733503 chr3R 12733560 12733566 4 81 9.5 10.0 9.8 0.4 81 chr3R 12733485 intergenic not near genes chr3R 12733526 intergenic not near genes chr3R 12733566 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-440 1624 chr3R 12748955 12748967 chr3R 12749054 12749080 4 109 8.0 8.5 8.2 0.4 125 chr3R 12748955 intron beat-Vc - chr3R 12749018 intron beat-Vc - chr3R 12749080 intron beat-Vc - chr3R_4_12745001 chr3R_12745001 RAL-440 1625 chr3R 12763132 12763154 chr3R 12763210 12763249 6 89 0.0 3.5 1.8 2.1 117 chr3R 12763132 intron beat-Vc - chr3R 12763190 intron beat-Vc - chr3R 12763249 intron beat-Vc - chr3R_6_12760001 chr3R_12760001 RAL-440 1626 chr3R 12814245 12814267 chr3R 12814334 12814363 4 90 6.0 10.0 8.0 0.4 118 chr3R 12814245 intron CG31345 - chr3R 12814304 intron CG31345 - chr3R 12814363 intron CG31345 - chr3R_4_12810001 chr3R_12810001 RAL-440 1627 chr3R 12815627 12815644 chr3R 12815698 12815699 8 72 8.0 6.5 7.2 1.0 72 chr3R 12815627 intron CG31345 - chr3R 12815663 intron CG31345 - chr3R 12815699 intron CG31345 - chr3R_8_12815001 chr3R_12815001 RAL-440 1628 chr3R 12858733 12858771 chr3R 12858823 12858867 7 88 5.5 6.0 5.8 1.0 134 chr3R 12858733 intron CG10126 - chr3R 12858800 intron CG10126 - chr3R 12858867 intron CG10126 - chr3R_7_12855001 chr3R_12855001 RAL-440 1629 chr3R 12920131 12920181 chr3R 12925354 12925371 copia 11 5209 3.0 5.5 4.2 2.1 5240 chr3R 12920131 intron beat-Vb + chr3R 12922751 intron beat-Vb + chr3R 12925371 intron beat-Vb + chr3R_11_12920001 chr3R_12920001 RAL-440 1630 chr3R 13066988 13067131 chr3R 13067092 13067212 10 96 2.0 0.5 1.2 4.5 224 chr3R 13066988 intron sim + chr3R 13067100 intron sim + chr3R 13067212 intron sim + chr3R_10_13065001 chr3R_13065001 RAL-440 1631 chr3R 13075342 13075368 chr3R 13075442 13075467 6 100 2.0 3.0 2.5 1.7 125 chr3R 13075342 intron sim + chr3R 13075404 intron sim + chr3R 13075467 intron sim + chr3R_6_13075001 chr3R_13075001 RAL-440 1632 chr3R 13078118 13078133 chr3R 13078209 13078219 4 94 3.5 2.5 3.0 1.0 101 chr3R 13078118 3` UTR sim + chr3R 13078168 intergenic sim + chr3R 13078219 intergenic sim + chr3R_4_13075001 chr3R_13075001 RAL-440 1633 chr3R 13079624 13079646 chr3R 13079824 13079845 7 201 7.0 8.0 7.5 0.8 221 chr3R 13079624 intergenic not near genes chr3R 13079734 intergenic not near genes chr3R 13079845 intergenic not near genes chr3R_7_13075001 chr3R_13075001 RAL-440 1634 chr3R 13120768 13120800 chr3R 13120851 13120878 7 78 5.0 3.0 4.0 1.4 110 chr3R 13120768 intron timeout + chr3R 13120823 intron timeout + chr3R 13120878 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-440 1635 chr3R 13135820 13135856 chr3R 13138008 13138051 pogo 9 2192 4.0 5.0 4.5 1.6 2231 chr3R 13135820 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136936 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138051 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13135001 chr3R_13135001 RAL-440 1636 chr3R 13143041 13143066 chr3R 13148621 13148623 mdg3 5 5577 2.5 6.5 4.5 0.9 5582 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148623 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-440 1637 chr3R 13205399 13205443 chr3R 13205500 13205542 5 90 11.5 14.5 13.0 0.4 143 chr3R 13205399 intergenic not near genes chr3R 13205470 intergenic not near genes chr3R 13205542 intergenic not near genes chr3R_5_13205001 chr3R_13205001 RAL-440 1638 chr3R 13206650 13206679 chr3R 13206895 13206903 8 243 8.0 10.5 9.2 0.8 253 chr3R 13206650 intergenic not near genes chr3R 13206776 intergenic not near genes chr3R 13206903 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-440 1639 chr3R 13248648 13248673 chr3R 13248763 13248792 4 114 9.0 7.0 8.0 0.4 144 chr3R 13248648 intron Ace - chr3R 13248720 intron Ace - chr3R 13248792 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-440 1640 chr3R 13325063 13325068 chr3R 13325202 13325230 4 149 10.0 11.5 10.8 0.3 167 chr3R 13325063 intergenic not near genes chr3R 13325146 intergenic not near genes chr3R 13325230 intergenic not near genes chr3R_4_13325001 chr3R_13325001 RAL-440 1641 chr3R 13378827 13378870 chr3R 13378936 13378957 4 101 8.5 12.5 10.5 0.3 130 chr3R 13378827 intron CG9813 - chr3R 13378892 intron CG9813 - chr3R 13378957 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-440 1642 chr3R 13456365 13456383 chr3R 13456460 13456491 5 104 7.0 7.5 7.2 0.6 126 chr3R 13456365 intron,intron CG14372 +,CR17025 - chr3R 13456428 intron,intron CG14372 +,CR17025 - chr3R 13456491 intron,intron CG14372 +,CR17025 - chr3R_5_13455001 chr3R_13455001 RAL-440 1643 chr3R 13496319 13496328 chr3R 13496401 13496442 5 92 12.5 15.0 13.8 0.3 123 chr3R 13496319 intergenic not near genes chr3R 13496380 intergenic not near genes chr3R 13496442 intergenic not near genes chr3R_5_13495001 chr3R_13495001 RAL-440 1644 chr3R 13517204 13517252 chr3R 13520041 13520048 jockey 4 2821 3.5 0.0 1.8 1.4 2844 chr3R 13517204 intergenic not near genes chr3R 13518626 intergenic not near genes chr3R 13520048 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-440 1645 chr3R 13603037 13603062 chr3R 13603148 13603166 5 109 13.0 7.5 10.2 0.4 129 chr3R 13603037 intergenic not near genes chr3R 13603102 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-440 1646 chr3R 13615182 13615217 chr3R 13615283 13615304 4 93 12.5 9.5 11.0 0.3 122 chr3R 13615182 intergenic not near genes chr3R 13615243 intergenic not near genes chr3R 13615304 intergenic not near genes chr3R_4_13615001 chr3R_13615001 RAL-440 1647 chr3R 13629083 13629096 chr3R 13629196 13629218 5 123 6.5 8.0 7.2 0.6 135 chr3R 13629083 intergenic not near genes chr3R 13629150 intergenic not near genes chr3R 13629218 intergenic not near genes chr3R_5_13625001 chr3R_13625001 RAL-440 1648 chr3R 13830190 13830213 chr3R 13830281 13830317 5 90 10.5 7.5 9.0 0.5 127 chr3R 13830190 intergenic not near genes chr3R 13830254 intergenic not near genes chr3R 13830317 intergenic not near genes chr3R_5_13830001 chr3R_13830001 RAL-440 1649 chr3R 13872179 13872200 chr3R 13872255 13872297 5 85 8.0 5.0 6.5 0.7 118 chr3R 13872179 intron E5 - chr3R 13872238 intron E5 - chr3R 13872297 intron E5 - chr3R_5_13870001 chr3R_13870001 RAL-440 1650 chr3R 13915670 13915715 chr3R 13916027 13916056 8 350 5.0 4.5 4.8 1.4 386 chr3R 13915670 intergenic not near genes chr3R 13915863 intergenic not near genes chr3R 13916056 intergenic not near genes chr3R_8_13915001 chr3R_13915001 RAL-440 1651 chr3R 13916310 13916342 chr3R 13916395 13916411 11 88 10.5 12.5 11.5 0.9 101 chr3R 13916310 intergenic not near genes chr3R 13916360 intergenic not near genes chr3R 13916411 intergenic not near genes chr3R_11_13915001 chr3R_13915001 RAL-440 1652 chr3R 13948208 13948236 chr3R 13948321 13948334 4 107 3.0 4.0 3.5 0.9 126 chr3R 13948208 intergenic CG31517 + chr3R 13948271 intergenic CG31517 + chr3R 13948334 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-440 1653 chr3R 13981222 13981243 chr3R 13981348 13981373 6 128 17.0 17.0 17.0 0.3 151 chr3R 13981222 intron rdx - chr3R 13981298 intron rdx - chr3R 13981373 intron rdx - chr3R_6_13980001 chr3R_13980001 RAL-440 1654 chr3R 14021643 14021658 chr3R 14023465 14023498 S-element 4 1834 5.5 4.5 5.0 0.7 1855 chr3R 14021643 intron rdx - chr3R 14022570 intron rdx - chr3R 14023498 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-440 1655 chr3R 14062844 14062863 chr3R 14062920 14062957 8 87 18.0 14.5 16.2 0.5 113 chr3R 14062844 intron foxo + chr3R 14062900 intron foxo + chr3R 14062957 intron foxo + chr3R_8_14060001 chr3R_14060001 RAL-440 1656 chr3R 14083394 14083430 chr3R 14083514 14083542 6 114 13.0 9.5 11.2 0.5 148 chr3R 14083394 intron foxo + chr3R 14083468 intron foxo + chr3R 14083542 intron foxo + chr3R_6_14080001 chr3R_14080001 RAL-440 1657 chr3R 14117442 14117464 chr3R 14117517 14117560 10 90 2.0 4.5 3.2 2.4 118 chr3R 14117442 intron Kif19A - chr3R 14117501 intron Kif19A - chr3R 14117560 intron Kif19A - chr3R_10_14115001 chr3R_14115001 RAL-440 1658 chr3R 14170155 14170176 chr3R 14170245 14170284 7 97 1.5 4.0 2.8 1.8 129 chr3R 14170155 3` UTR Dop1R1 - chr3R 14170220 3` UTR Dop1R1 - chr3R 14170284 3` UTR Dop1R1 - chr3R_7_14170001 chr3R_14170001 RAL-440 1659 chr3R 14217428 14217440 chr3R 14217500 14217505 5 82 13.0 14.0 13.5 0.3 77 chr3R 14217428 intron CG9649 - chr3R 14217466 intron CG9649 - chr3R 14217505 intron CG9649 - chr3R_5_14215001 chr3R_14215001 RAL-440 1660 chr3R 14246400 14246418 chr3R 14247895 14247917 jockey 5 1498 4.0 6.0 5.0 0.8 1517 chr3R 14246400 intergenic not near genes chr3R 14247158 intergenic not near genes chr3R 14247917 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-440 1661 chr3R 14366188 14366228 chr3R 14366284 14366320 7 88 8.0 10.5 9.2 0.7 132 chr3R 14366188 intron NK7.1 - chr3R 14366254 intron NK7.1 - chr3R 14366320 intron NK7.1 - chr3R_7_14365001 chr3R_14365001 RAL-440 1662 chr3R 14440714 14440739 chr3R 14440810 14440835 4 96 4.5 7.0 5.8 0.6 121 chr3R 14440714 intron cv-c - chr3R 14440774 intron cv-c - chr3R 14440835 intron cv-c - chr3R_4_14440001 chr3R_14440001 RAL-440 1663 chr3R 14504497 14504520 chr3R 14504851 14504868 4 346 5.0 9.0 7.0 0.5 371 chr3R 14504497 intron CR44177 + chr3R 14504682 intron CR44177 + chr3R 14504868 intron CR44177 + chr3R_4_14500001 chr3R_14500001 RAL-440 1664 chr3R 14549787 14549834 chr3R 14549883 14549901 7 89 14.0 16.0 15.0 0.4 114 chr3R 14549787 intron Pde6 - chr3R 14549844 intron Pde6 - chr3R 14549901 intron Pde6 - chr3R_7_14545001 chr3R_14545001 RAL-440 1665 chr3R 14682876 14682885 chr3R 14682972 14682985 5 97 4.5 9.0 6.8 0.6 109 chr3R 14682876 intron Meltrin - chr3R 14682930 intron Meltrin - chr3R 14682985 intron Meltrin - chr3R_5_14680001 chr3R_14680001 RAL-440 1666 chr3R 14680714 14680740 chr3R 14687829 14687855 5 7117 27.0 26.5 26.8 0.2 7141 chr3R 14680714 intron Meltrin - chr3R 14684284 intron Meltrin - chr3R 14687855 intron Meltrin - chr3R_5_14680001 chr3R_14680001 RAL-440 1667 chr3R 14704368 14704410 chr3R 14704461 14704505 13 89 5.5 4.5 5.0 2.2 137 chr3R 14704368 intron kibra - chr3R 14704436 intron kibra - chr3R 14704505 intron kibra - chr3R_13_14700001 chr3R_14700001 RAL-440 1668 chr3R 14744226 14744270 chr3R 14745944 14745998 9 1723 20.5 20.0 20.2 0.4 1772 chr3R 14744226 intron jvl + chr3R 14745112 intron jvl + chr3R 14745998 intron jvl + chr3R_9_14745001 chr3R_14745001 RAL-440 1669 chr3R 14881500 14881776 chr3R 14881593 14881884 12 105 18.5 25.0 21.8 0.5 384 chr3R 14881500 exon CG3631 + chr3R 14881692 exon CG3631 + chr3R 14881884 exon CG3631 + chr3R_12_14880001 chr3R_14880001 RAL-440 1670 chr3R 15004183 15004220 chr3R 15004289 15004326 7 104 11.0 8.0 9.5 0.7 143 chr3R 15004183 intergenic CR45599 - chr3R 15004254 intergenic CR45599 - chr3R 15004326 3` UTR CR45599 - chr3R_7_15000001 chr3R_15000001 RAL-440 1671 chr3R 15041420 15041441 chr3R 15045193 15045212 Doc 4 3772 0.5 4.5 2.5 1.1 3792 chr3R 15041420 intergenic not near genes chr3R 15043316 intergenic not near genes chr3R 15045212 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-440 1672 chr3R 15079805 15079836 chr3R 15080049 15080060 pogo 8 248 3.5 1.5 2.5 2.3 255 chr3R 15079805 3` UTR CG6966 - chr3R 15079932 3` UTR CG6966 - chr3R 15080060 3` UTR CG6966 - chr3R_8_15075001 chr3R_15075001 RAL-440 1673 chr3R 15084141 15084169 chr3R 15084279 15084318 4 146 3.0 4.5 3.8 0.8 177 chr3R 15084141 intron CG6966 - chr3R 15084230 intron CG6966 - chr3R 15084318 intron CG6966 - chr3R_4_15080001 chr3R_15080001 RAL-440 1674 chr3R 15087752 15087798 chr3R 15087852 15087882 7 97 13.5 15.0 14.2 0.5 130 chr3R 15087752 intron CG6966 - chr3R 15087817 intron CG6966 - chr3R 15087882 intron CG6966 - chr3R_7_15085001 chr3R_15085001 RAL-440 1675 chr3R 15102482 15102526 chr3R 15109760 15109796 412 6 7274 2.0 3.5 2.8 1.6 7314 chr3R 15102482 intron CG42788 - chr3R 15106139 intron CG42788 - chr3R 15109796 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-440 1676 chr3R 15112999 15113017 chr3R 15113102 15113116 6 104 9.0 12.0 10.5 0.5 117 chr3R 15112999 intron CG42788 - chr3R 15113058 intron CG42788 - chr3R 15113116 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-440 1677 chr3R 15114903 15114942 chr3R 15114999 15115022 6 89 10.5 10.0 10.2 0.5 119 chr3R 15114903 intron CG42788 - chr3R 15114962 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-440 1678 chr3R 15127774 15127806 chr3R 15127863 15127901 5 91 1.5 1.5 1.5 2.0 127 chr3R 15127774 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127901 intron CG42788 - chr3R_5_15125001 chr3R_15125001 RAL-440 1679 chr3R 15132055 15132076 chr3R 15135119 15135147 Juan 7 3069 5.5 4.5 5.0 1.2 3092 chr3R 15132055 intergenic CG42788 - chr3R 15133601 intergenic not near genes chr3R 15135147 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-440 1680 chr3R 15160545 15160583 chr3R 15160662 15160696 7 112 12.5 10.5 11.5 0.6 151 chr3R 15160545 intron Gyc88E + chr3R 15160620 intron Gyc88E + chr3R 15160696 intron Gyc88E + chr3R_7_15160001 chr3R_15160001 RAL-440 1681 chr3R 15162525 15162574 chr3R 15167312 15167353 F-element 9 4776 3.5 1.0 2.2 2.8 4828 chr3R 15162525 intron Gyc88E + chr3R 15164939 intron Gyc88E + chr3R 15167353 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-440 1682 chr3R 15167807 15167827 chr3R 15167969 15168003 5 165 10.5 9.5 10.0 0.5 196 chr3R 15167807 intron Gyc88E + chr3R 15167905 intron Gyc88E + chr3R 15168003 intron Gyc88E + chr3R_5_15165001 chr3R_15165001 RAL-440 1683 chr3R 15302492 15302534 chr3R 15302583 15302627 8 85 9.5 9.5 9.5 0.8 135 chr3R 15302492 intron Tm1 + chr3R 15302560 intron Tm1 + chr3R 15302627 intron Tm1 + chr3R_8_15300001 chr3R_15300001 RAL-440 1684 chr3R 15325142 15325164 chr3R 15325255 15325259 4 104 7.0 8.5 7.8 0.5 117 chr3R 15325142 3` UTR ear + chr3R 15325200 3` UTR ear + chr3R 15325259 3` UTR ear + chr3R_4_15325001 chr3R_15325001 RAL-440 1685 chr3R 15361717 15361726 chr3R 15361808 15361825 4 93 8.5 6.5 7.5 0.5 108 chr3R 15361717 5` UTR Trax + chr3R 15361771 5` UTR Trax + chr3R 15361825 exon Trax + chr3R_4_15360001 chr3R_15360001 RAL-440 1686 chr3R 15406150 15406171 chr3R 15406240 15406263 5 89 4.0 0.0 2.0 1.7 113 chr3R 15406150 intron CG6125 - chr3R 15406206 intron CG6125 - chr3R 15406263 intron CG6125 - chr3R_5_15405001 chr3R_15405001 RAL-440 1687 chr3R 15469352 15469393 chr3R 15469463 15469493 6 104 12.0 11.5 11.8 0.5 141 chr3R 15469352 intron AdamTS-A - chr3R 15469422 intron AdamTS-A - chr3R 15469493 intron AdamTS-A - chr3R_6_15465001 chr3R_15465001 RAL-440 1688 chr3R 15564434 15564459 chr3R 15564597 15564604 4 158 16.5 12.0 14.2 0.3 170 chr3R 15564434 intergenic not near genes chr3R 15564519 intergenic not near genes chr3R 15564604 intergenic not near genes chr3R_4_15560001 chr3R_15560001 RAL-440 1689 chr3R 15571122 15571139 chr3R 15571392 15571403 4 268 11.0 9.5 10.2 0.4 281 chr3R 15571122 intergenic not near genes chr3R 15571262 intergenic not near genes chr3R 15571403 intergenic not near genes chr3R_4_15570001 chr3R_15570001 RAL-440 1690 chr3R 15601165 15601196 chr3R 15608687 15608738 412 10 7530 5.5 2.5 4.0 2.0 7573 chr3R 15601165 intergenic not near genes chr3R 15604952 intergenic not near genes chr3R 15608738 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-440 1691 chr3R 15646777 15646800 chr3R 15646878 15646882 10 95 1.0 4.0 2.5 2.9 105 chr3R 15646777 intergenic not near genes chr3R 15646830 intergenic not near genes chr3R 15646882 intergenic not near genes chr3R_10_15645001 chr3R_15645001 RAL-440 1692 chr3R 15664496 15664540 chr3R 15664583 15664608 4 84 4.5 6.5 5.5 0.6 112 chr3R 15664496 intergenic not near genes chr3R 15664552 intergenic not near genes chr3R 15664608 intergenic not near genes chr3R_4_15660001 chr3R_15660001 RAL-440 1693 chr3R 15691180 15691331 chr3R 15691289 15691438 9 104 0.0 0.0 0.0 9.0 258 chr3R 15691180 intergenic not near genes chr3R 15691309 intergenic not near genes chr3R 15691438 intergenic not near genes chr3R_9_15690001 chr3R_15690001 RAL-440 1694 chr3R 15716840 15716868 chr3R 15716942 15716987 6 108 11.5 11.0 11.2 0.5 147 chr3R 15716840 intergenic CG31294 - chr3R 15716914 intergenic CG31294 - chr3R 15716987 intergenic CG31294 - chr3R_6_15715001 chr3R_15715001 RAL-440 1695 chr3R 15758904 15758936 chr3R 15759113 15759121 6 214 11.0 8.0 9.5 0.6 217 chr3R 15758904 intergenic not near genes chr3R 15759012 intergenic not near genes chr3R 15759121 intergenic not near genes chr3R_6_15755001 chr3R_15755001 RAL-440 1696 chr3R 15844096 15844137 chr3R 15844206 15844240 11 111 1.5 1.5 1.5 4.4 144 chr3R 15844096 exon spn-E + chr3R 15844168 3` UTR spn-E + chr3R 15844240 3` UTR spn-E + chr3R_11_15840001 chr3R_15840001 RAL-440 1697 chr3R 15845911 15845945 chr3R 15846009 15846042 4 96 9.0 9.5 9.2 0.4 131 chr3R 15845911 intron cv-d - chr3R 15845976 intron cv-d - chr3R 15846042 intron cv-d - chr3R_4_15845001 chr3R_15845001 RAL-440 1698 chr3R 15871401 15871435 chr3R 15871505 15871521 7 97 7.0 1.0 4.0 1.4 120 chr3R 15871401 intron CG31183 - chr3R 15871461 intron CG31183 - chr3R 15871521 intron CG31183 - chr3R_7_15870001 chr3R_15870001 RAL-440 1699 chr3R 15879330 15879361 chr3R 15879437 15879459 5 105 11.5 10.5 11.0 0.4 129 chr3R 15879330 intergenic not near genes chr3R 15879394 intergenic not near genes chr3R 15879459 intergenic not near genes chr3R_5_15875001 chr3R_15875001 RAL-440 1700 chr3R 15892643 15892681 chr3R 15892738 15892782 6 97 9.5 9.0 9.2 0.6 139 chr3R 15892643 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892782 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-440 1701 chr3R 16116598 16116649 chr3R 16116700 16116740 4 92 3.5 3.5 3.5 0.9 142 chr3R 16116598 intron Sb + chr3R 16116669 intron Sb + chr3R 16116740 intron Sb + chr3R_4_16115001 chr3R_16115001 RAL-440 1702 chr3R 16189393 16189439 chr3R 16189813 16189860 invader4 4 418 8.0 8.0 8.0 0.4 467 chr3R 16189393 intron sra + chr3R 16189626 intron sra + chr3R 16189860 intron sra + chr3R_4_16185001 chr3R_16185001 RAL-440 1703 chr3R 16225069 16225119 chr3R 16225173 16225220 9 99 1.5 3.0 2.2 2.8 151 chr3R 16225069 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225220 intergenic tara + chr3R_9_16225001 chr3R_16225001 RAL-440 1704 chr3R 16230594 16230631 chr3R 16230685 16230712 6 89 17.0 15.0 16.0 0.4 118 chr3R 16230594 intron tara + chr3R 16230653 intron tara + chr3R 16230712 intron tara + chr3R_6_16230001 chr3R_16230001 RAL-440 1705 chr3R 16246541 16246552 chr3R 16246623 16246636 4 90 6.0 11.0 8.5 0.4 95 chr3R 16246541 intron tara + chr3R 16246588 intron tara + chr3R 16246636 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-440 1706 chr3R 16374288 16374326 chr3R 16374415 16374463 6 131 4.0 5.5 4.8 1.0 175 chr3R 16374288 intergenic ss - chr3R 16374376 intergenic ss - chr3R 16374463 3` UTR ss - chr3R_6_16370001 chr3R_16370001 RAL-440 1707 chr3R 16422117 16422154 chr3R 16422204 16422247 7 82 2.0 2.0 2.0 2.3 130 chr3R 16422117 intergenic not near genes chr3R 16422182 intergenic not near genes chr3R 16422247 intergenic not near genes chr3R_7_16420001 chr3R_16420001 RAL-440 1708 chr3R 16499555 16499574 chr3R 16499640 16499675 4 96 0.0 5.5 2.8 1.1 120 chr3R 16499555 intron decay - chr3R 16499615 intron decay - chr3R 16499675 intron decay - chr3R_4_16495001 chr3R_16495001 RAL-440 1709 chr3R 16671243 16671250 chr3R 16671325 16671326 5 85 5.5 6.0 5.8 0.7 83 chr3R 16671243 intron Ubx - chr3R 16671284 intron Ubx - chr3R 16671326 intron Ubx - chr3R_5_16670001 chr3R_16670001 RAL-440 1710 chr3R 16756325 16756351 chr3R 16762520 16762521 diver 4 6187 3.0 3.5 3.2 1.0 6196 chr3R 16756325 intron bxd - chr3R 16759423 intron bxd - chr3R 16762521 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-440 1711 chr3R 16786804 16786839 chr3R 16786897 16786928 6 95 12.0 14.0 13.0 0.4 124 chr3R 16786804 intergenic not near genes chr3R 16786866 intergenic not near genes chr3R 16786928 intergenic not near genes chr3R_6_16785001 chr3R_16785001 RAL-440 1712 chr3R 16836956 16836986 chr3R 16837298 16837300 4 335 9.0 3.0 6.0 0.6 344 chr3R 16836956 intron iab-8 - chr3R 16837128 intron iab-8 - chr3R 16837300 intron iab-8 - chr3R_4_16835001 chr3R_16835001 RAL-440 1713 chr3R 16845156 16845166 chr3R 16845243 16845260 5 94 8.0 4.5 6.2 0.7 104 chr3R 16845156 intron iab-8 - chr3R 16845208 intron iab-8 - chr3R 16845260 intron iab-8 - chr3R_5_16845001 chr3R_16845001 RAL-440 1714 chr3R 16860325 16860359 chr3R 16860417 16860443 6 88 6.0 6.0 6.0 0.9 118 chr3R 16860325 intron iab-8 - chr3R 16860384 intron iab-8 - chr3R 16860443 intron iab-8 - chr3R_6_16860001 chr3R_16860001 RAL-440 1715 chr3R 16936934 16936981 chr3R 16937045 16937087 6 110 8.0 8.0 8.0 0.7 153 chr3R 16936934 intron Abd-B - chr3R 16937010 intron Abd-B - chr3R 16937087 intron Abd-B - chr3R_6_16935001 chr3R_16935001 RAL-440 1716 chr3R 17023994 17024003 chr3R 17024156 17024162 4 165 10.5 7.5 9.0 0.4 168 chr3R 17023994 intron Pxd + chr3R 17024078 intron Pxd + chr3R 17024162 intron Pxd + chr3R_4_17020001 chr3R_17020001 RAL-440 1717 chr3R 17082093 17082129 chr3R 17082185 17082227 6 89 13.0 16.0 14.5 0.4 134 chr3R 17082093 intron kuk + chr3R 17082160 intron kuk + chr3R 17082227 intron kuk + chr3R_6_17080001 chr3R_17080001 RAL-440 1718 chr3R 17175743 17175757 chr3R 17175867 17175907 6 141 10.5 12.5 11.5 0.5 164 chr3R 17175743 intron Mur89F - chr3R 17175825 intron Mur89F - chr3R 17175907 intron Mur89F - chr3R_6_17175001 chr3R_17175001 RAL-440 1719 chr3R 17294673 17294704 chr3R 17295097 17295128 BS 13 435 2.0 3.5 2.8 3.4 455 chr3R 17294673 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295128 intergenic not near genes chr3R_13_17290001 chr3R_17290001 RAL-440 1720 chr3R 17319029 17319063 chr3R 17319135 17319169 5 101 11.0 10.5 10.8 0.4 140 chr3R 17319029 intergenic not near genes chr3R 17319099 intergenic not near genes chr3R 17319169 intergenic not near genes chr3R_5_17315001 chr3R_17315001 RAL-440 1721 chr3R 17326490 17326531 chr3R 17326587 17326633 4 96 9.5 8.5 9.0 0.4 143 chr3R 17326490 intron beat-IIa - chr3R 17326562 intron beat-IIa - chr3R 17326633 intron beat-IIa - chr3R_4_17325001 chr3R_17325001 RAL-440 1722 chr3R 17329861 17329902 chr3R 17329970 17330021 4 109 10.0 6.5 8.2 0.4 160 chr3R 17329861 intron beat-IIa - chr3R 17329941 intron beat-IIa - chr3R 17330021 intron beat-IIa - chr3R_4_17325001 chr3R_17325001 RAL-440 1723 chr3R 17396706 17396718 chr3R 17396802 17396819 4 97 22.5 21.5 22.0 0.2 113 chr3R 17396706 3` UTR Sur-8 - chr3R 17396762 3` UTR Sur-8 - chr3R 17396819 3` UTR Sur-8 - chr3R_4_17395001 chr3R_17395001 RAL-440 1724 chr3R 17463246 17463284 chr3R 17463541 17463586 8 301 9.0 16.0 12.5 0.6 340 chr3R 17463246 intergenic not near genes chr3R 17463416 intergenic not near genes chr3R 17463586 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-440 1725 chr3R 17497958 17497992 chr3R 17498048 17498088 9 98 3.5 3.0 3.2 2.1 130 chr3R 17497958 intron Dscam3 - chr3R 17498023 intron Dscam3 - chr3R 17498088 intron Dscam3 - chr3R_9_17495001 chr3R_17495001 RAL-440 1726 chr3R 17500582 17500634 chr3R 17500733 17500785 5 150 5.5 4.5 5.0 0.8 203 chr3R 17500582 intron Dscam3 - chr3R 17500684 intron Dscam3 - chr3R 17500785 intron Dscam3 - chr3R_5_17500001 chr3R_17500001 RAL-440 1727 chr3R 17517697 17517732 chr3R 17517804 17517838 7 114 6.0 6.5 6.2 1.0 141 chr3R 17517697 intergenic not near genes chr3R 17517768 intergenic CR44349 - chr3R 17517838 intergenic CR44349 - chr3R_7_17515001 chr3R_17515001 RAL-440 1728 chr3R 17624954 17624972 chr3R 17625048 17625053 5 91 2.0 2.0 2.0 1.7 99 chr3R 17624954 intergenic AttD + chr3R 17625004 intergenic AttD + chr3R 17625053 intergenic AttD + chr3R_5_17625001 chr3R_17625001 RAL-440 1729 chr3R 17702537 17702579 chr3R 17702672 17702712 6 132 4.0 11.0 7.5 0.7 175 chr3R 17702537 intron osa - chr3R 17702624 intron osa - chr3R 17702712 intron osa - chr3R_6_17700001 chr3R_17700001 RAL-440 1730 chr3R 17711750 17711780 chr3R 17711842 17711873 6 96 8.5 10.0 9.2 0.6 123 chr3R 17711750 intron osa - chr3R 17711812 intron osa - chr3R 17711873 intron osa - chr3R_6_17710001 chr3R_17710001 RAL-440 1731 chr3R 17734832 17734857 chr3R 17734956 17734990 4 129 2.0 1.5 1.8 1.4 158 chr3R 17734832 intergenic CG14321 + chr3R 17734911 intergenic not near genes chr3R 17734990 intergenic not near genes chr3R_4_17730001 chr3R_17730001 RAL-440 1732 chr3R 17743217 17743235 chr3R 17743298 17743318 4 87 10.5 12.0 11.2 0.3 101 chr3R 17743217 intron TyrRII + chr3R 17743268 intron TyrRII + chr3R 17743318 intron TyrRII + chr3R_4_17740001 chr3R_17740001 RAL-440 1733 chr3R 17768024 17768070 chr3R 17768147 17768177 8 118 8.0 8.5 8.2 0.9 153 chr3R 17768024 intergenic CG43102 - chr3R 17768100 intergenic CG43102 - chr3R 17768177 intergenic CG43102 - chr3R_8_17765001 chr3R_17765001 RAL-440 1734 chr3R 17823189 17823227 chr3R 17823294 17823325 7 100 5.0 5.0 5.0 1.2 136 chr3R 17823189 intron tinc + chr3R 17823257 intron tinc + chr3R 17823325 intron tinc + chr3R_7_17820001 chr3R_17820001 RAL-440 1735 chr3R 17871529 17871564 chr3R 17878684 17878719 9 7147 29.5 21.5 25.5 0.3 7190 chr3R 17871529 3` UTR tinc + chr3R 17875124 3` UTR Rim - chr3R 17878719 intron Rim - chr3R_9_17875001 chr3R_17875001 RAL-440 1736 chr3R 17895327 17895376 chr3R 17895431 17895480 4 105 8.0 7.5 7.8 0.5 153 chr3R 17895327 intron Rim - chr3R 17895404 intron Rim - chr3R 17895480 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-440 1737 chr3R 17912815 17912845 chr3R 17912915 17912928 5 91 16.0 12.0 14.0 0.3 113 chr3R 17912815 intron Rim - chr3R 17912872 intron Rim - chr3R 17912928 intron Rim - chr3R_5_17910001 chr3R_17910001 RAL-440 1738 chr3R 17922955 17922991 chr3R 17923058 17923092 7 100 11.5 11.5 11.5 0.6 137 chr3R 17922955 intron cpo + chr3R 17923024 intron cpo + chr3R 17923092 intron cpo + chr3R_7_17920001 chr3R_17920001 RAL-440 1739 chr3R 17925850 17925880 chr3R 17927334 17927367 hobo 7 1479 5.5 7.5 6.5 0.9 1517 chr3R 17925850 intron cpo + chr3R 17926608 intron cpo + chr3R 17927367 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-440 1740 chr3R 18061576 18061605 chr3R 18063158 18063190 F-element 5 1577 2.0 2.5 2.2 1.6 1614 chr3R 18061576 intergenic not near genes chr3R 18062383 intergenic not near genes chr3R 18063190 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-440 1741 chr3R 18109267 18109288 chr3R 18109374 18109397 5 105 17.5 12.0 14.8 0.3 130 chr3R 18109267 intron sr + chr3R 18109332 intron sr + chr3R 18109397 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-440 1742 chr3R 18145268 18145284 chr3R 18145444 18145469 7 182 11.0 9.5 10.2 0.6 201 chr3R 18145268 intergenic not near genes chr3R 18145368 intergenic not near genes chr3R 18145469 intergenic not near genes chr3R_7_18145001 chr3R_18145001 RAL-440 1743 chr3R 18209467 18209490 chr3R 18209560 18209574 4 83 7.0 10.5 8.8 0.4 107 chr3R 18209467 intron CG7985 + chr3R 18209520 intron CG7985 + chr3R 18209574 intron CG7985 + chr3R_4_18205001 chr3R_18205001 RAL-440 1744 chr3R 18235397 18235439 chr3R 18235487 18235541 6 92 5.5 4.5 5.0 1.0 144 chr3R 18235397 intergenic not near genes chr3R 18235469 intergenic not near genes chr3R 18235541 intergenic not near genes chr3R_6_18235001 chr3R_18235001 RAL-440 1745 chr3R 18257825 18257854 chr3R 18257947 18257981 5 127 5.5 8.0 6.8 0.6 156 chr3R 18257825 intergenic Tgs1 +,moi + chr3R 18257903 intergenic Tgs1 +,moi + chr3R 18257981 intergenic Tgs1 +,moi + chr3R_5_18255001 chr3R_18255001 RAL-440 1746 chr3R 18374642 18374663 chr3R 18374765 18374767 5 112 10.5 15.0 12.8 0.4 125 chr3R 18374642 5` UTR CR44946 + chr3R 18374704 5` UTR CR44946 + chr3R 18374767 5` UTR CR44946 + chr3R_5_18370001 chr3R_18370001 RAL-440 1747 chr3R 18472271 18472296 chr3R 18472388 18472417 6 116 3.5 1.0 2.2 1.9 146 chr3R 18472271 intron fru - chr3R 18472344 intron fru - chr3R 18472417 intron fru - chr3R_6_18470001 chr3R_18470001 RAL-440 1748 chr3R 18473231 18473253 chr3R 18473328 18473359 5 103 0.0 3.5 1.8 1.8 128 chr3R 18473231 intron fru - chr3R 18473295 intron fru - chr3R 18473359 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-440 1749 chr3R 18501594 18501628 chr3R 18501690 18501715 8 93 6.5 10.5 8.5 0.8 121 chr3R 18501594 intron fru - chr3R 18501654 intron fru - chr3R 18501715 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-440 1750 chr3R 18606493 18606528 chr3R 18610737 18610770 F-element 6 4239 3.5 5.0 4.2 1.2 4277 chr3R 18606493 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610770 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-440 1751 chr3R 18618245 18618297 chr3R 18618350 18618388 10 100 0.5 1.5 1.0 5.0 143 chr3R 18618245 intron,intron qin +,CG14304 - chr3R 18618316 intron,intron qin +,CG14304 - chr3R 18618388 intron,intron qin +,CG14304 - chr3R_10_18615001 chr3R_18615001 RAL-440 1752 chr3R 18695742 18695772 chr3R 18695844 18695855 4 94 6.5 0.0 3.2 1.0 113 chr3R 18695742 3` UTR CG34282 + chr3R 18695798 intergenic CG34282 + chr3R 18695855 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-440 1753 chr3R 18766773 18766807 chr3R 18766866 18766889 5 87 12.5 8.5 10.5 0.4 116 chr3R 18766773 intron CG7720 - chr3R 18766831 intron CG7720 - chr3R 18766889 intron CG7720 - chr3R_5_18765001 chr3R_18765001 RAL-440 1754 chr3R 18781718 18781918 chr3R 18781774 18782025 4 81 3.5 4.0 3.8 0.8 307 chr3R 18781718 intron CG7720 - chr3R 18781872 intron CG7720 - chr3R 18782025 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-440 1755 chr3R 18812078 18812108 chr3R 18812161 18812198 18 89 2.0 8.5 5.2 2.9 120 chr3R 18812078 intron CG18208 - chr3R 18812138 intron CG18208 - chr3R 18812198 intron CG18208 - chr3R_18_18810001 chr3R_18810001 RAL-440 1756 chr3R 18821606 18821642 chr3R 18821695 18821726 7 85 8.5 9.5 9.0 0.7 120 chr3R 18821606 intron CG18208 - chr3R 18821666 intron CG18208 - chr3R 18821726 intron CG18208 - chr3R_7_18820001 chr3R_18820001 RAL-440 1757 chr3R 18842890 18842932 chr3R 18842990 18843032 6 102 11.0 12.5 11.8 0.5 142 chr3R 18842890 intron CG18208 - chr3R 18842961 intron CG18208 - chr3R 18843032 intron CG18208 - chr3R_6_18840001 chr3R_18840001 RAL-440 1758 chr3R 18850853 18850887 chr3R 18850943 18850986 6 97 6.0 7.0 6.5 0.8 133 chr3R 18850853 intergenic CR45633 -,CG31226 - chr3R 18850920 intergenic CR45633 -,CG31226 - chr3R 18850986 3` UTR CR45633 - chr3R_6_18850001 chr3R_18850001 RAL-440 1759 chr3R 18885919 18885944 chr3R 18886020 18886026 4 92 10.0 6.5 8.2 0.4 107 chr3R 18885919 intergenic not near genes chr3R 18885972 intergenic not near genes chr3R 18886026 intergenic not near genes chr3R_4_18885001 chr3R_18885001 RAL-440 1760 chr3R 18926986 18927003 chr3R 18927164 18927169 4 178 4.5 7.5 6.0 0.6 183 chr3R 18926986 intergenic Mpc1 -,Xrp1 + chr3R 18927078 3` UTR Mpc1 - chr3R 18927169 3` UTR Mpc1 - chr3R_4_18925001 chr3R_18925001 RAL-440 1761 chr3R 19136406 19136411 chr3R 19139785 19139806 Bari1 5 3381 32.5 19.0 25.8 0.2 3400 chr3R 19136406 exon Cyp12a4 + chr3R 19138106 intergenic not near genes chr3R 19139806 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-440 1762 chr3R 19253284 19253323 chr3R 19253394 19253395 6 94 2.0 6.0 4.0 1.2 111 chr3R 19253284 intergenic not near genes chr3R 19253340 intergenic not near genes chr3R 19253395 intergenic not near genes chr3R_6_19250001 chr3R_19250001 RAL-440 1763 chr3R 19340375 19340421 chr3R 19340472 19340478 8 86 4.0 2.0 3.0 2.0 103 chr3R 19340375 intergenic not near genes chr3R 19340426 intergenic not near genes chr3R 19340478 intergenic not near genes chr3R_8_19340001 chr3R_19340001 RAL-440 1764 chr3R 19344662 19344700 chr3R 19344808 19344849 5 147 1.5 1.0 1.2 2.3 187 chr3R 19344662 intergenic not near genes chr3R 19344756 intergenic not near genes chr3R 19344849 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-440 1765 chr3R 19367571 19367599 chr3R 19367680 19367690 4 103 3.5 6.0 4.8 0.7 119 chr3R 19367571 intergenic not near genes chr3R 19367630 intergenic not near genes chr3R 19367690 intergenic not near genes chr3R_4_19365001 chr3R_19365001 RAL-440 1766 chr3R 19474870 19474895 chr3R 19475025 19475049 8 162 3.5 3.0 3.2 1.9 179 chr3R 19474870 intron Dys + chr3R 19474960 intron Dys + chr3R 19475049 intron Dys + chr3R_8_19470001 chr3R_19470001 RAL-440 1767 chr3R 19611992 19612015 chr3R 19616005 19616048 6 4022 11.5 16.5 14.0 0.4 4056 chr3R 19611992 exon CG17752 + chr3R 19614020 exon CG16727 + chr3R 19616048 3` UTR CG6231 - chr3R_6_19610001 chr3R_19610001 RAL-440 1768 chr3R 19657672 19657713 chr3R 19657777 19657783 7 97 16.0 17.5 16.8 0.4 111 chr3R 19657672 5` UTR CG6184 - chr3R 19657728 5` UTR CG6184 - chr3R 19657783 5` UTR CG6184 - chr3R_7_19655001 chr3R_19655001 RAL-440 1769 chr3R 19702314 19702353 chr3R 19702401 19702445 9 91 4.5 5.0 4.8 1.6 131 chr3R 19702314 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702445 intergenic not near genes chr3R_9_19700001 chr3R_19700001 RAL-440 1770 chr3R 19757192 19757213 chr3R 19757293 19757303 4 94 7.5 5.5 6.5 0.5 111 chr3R 19757192 intron GluClalpha + chr3R 19757248 intron GluClalpha + chr3R 19757303 intron GluClalpha + chr3R_4_19755001 chr3R_19755001 RAL-440 1771 chr3R 19793888 19793914 chr3R 19793987 19793994 4 97 11.5 13.5 12.5 0.3 106 chr3R 19793888 intergenic bnl - chr3R 19793941 intergenic bnl - chr3R 19793994 intergenic bnl - chr3R_4_19790001 chr3R_19790001 RAL-440 1772 chr3R 20059449 20059494 chr3R 20059545 20059592 4 93 6.0 5.5 5.8 0.6 143 chr3R 20059449 intron CG4390 - chr3R 20059520 intron CG4390 - chr3R 20059592 exon CG4390 - chr3R_4_20055001 chr3R_20055001 RAL-440 1773 chr3R 20077032 20077060 chr3R 20077130 20077152 5 97 9.0 11.5 10.2 0.4 120 chr3R 20077032 intergenic not near genes chr3R 20077092 intergenic not near genes chr3R 20077152 intergenic not near genes chr3R_5_20075001 chr3R_20075001 RAL-440 1774 chr3R 20109545 20109567 chr3R 20114755 20114792 copia 9 5220 1.0 6.0 3.5 2.0 5247 chr3R 20109545 intergenic not near genes chr3R 20112168 intergenic not near genes chr3R 20114792 intergenic CG10887 + chr3R_9_20110001 chr3R_20110001 RAL-440 1775 chr3R 20156683 20156699 chr3R 20165864 20165878 roo 8 9180 10.0 5.5 7.8 0.9 9195 chr3R 20156683 intergenic not near genes chr3R 20161280 intergenic not near genes chr3R 20165878 intergenic not near genes chr3R_8_20160001 chr3R_20160001 RAL-440 1776 chr3R 20156700 20156718 chr3R 20165862 20165908 roo 6 9175 7.0 5.0 6.0 0.9 9208 chr3R 20156700 intergenic not near genes chr3R 20161304 intergenic not near genes chr3R 20165908 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-440 1777 chr3R 20195229 20195256 chr3R 20195313 20195340 10 76 2.0 1.5 1.8 3.6 111 chr3R 20195229 intergenic not near genes chr3R 20195284 intergenic not near genes chr3R 20195340 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-440 1778 chr3R 20197097 20197130 chr3R 20197190 20197204 4 89 13.0 14.0 13.5 0.3 107 chr3R 20197097 intergenic not near genes chr3R 20197150 intergenic not near genes chr3R 20197204 intergenic not near genes chr3R_4_20195001 chr3R_20195001 RAL-440 1779 chr3R 20231458 20231458 chr3R 20231627 20231634 4 168 23.5 9.0 16.2 0.2 176 chr3R 20231458 intron Nlg4 + chr3R 20231546 intron Nlg4 + chr3R 20231634 intron Nlg4 + chr3R_4_20230001 chr3R_20230001 RAL-440 1780 chr3R 20258655 20258677 chr3R 20258754 20258779 7 98 15.0 10.5 12.8 0.5 124 chr3R 20258655 intron cic + chr3R 20258717 intron cic + chr3R 20258779 intron cic + chr3R_7_20255001 chr3R_20255001 RAL-440 1781 chr3R 20266511 20266541 chr3R 20272995 20273023 Burdock 8 6483 2.5 6.5 4.5 1.5 6512 chr3R 20266511 intron cic + chr3R 20269767 intron cic + chr3R 20273023 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-440 1782 chr3R 20282286 20282303 chr3R 20282351 20282399 6 88 0.0 3.0 1.5 2.4 113 chr3R 20282286 intron cic + chr3R 20282342 intron cic + chr3R 20282399 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-440 1783 chr3R 20330982 20331007 chr3R 20331488 20331509 roo 6 504 5.5 2.0 3.8 1.2 527 chr3R 20330982 intergenic Sirt2 + chr3R 20331246 intergenic Sirt2 + chr3R 20331509 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-440 1784 chr3R 20389686 20389721 chr3R 20389779 20389789 4 89 5.0 3.0 4.0 0.8 103 chr3R 20389686 intron Gfrl - chr3R 20389738 intron Gfrl - chr3R 20389789 intron Gfrl - chr3R_4_20385001 chr3R_20385001 RAL-440 1785 chr3R 20433114 20433129 chr3R 20433209 20433232 4 104 7.5 8.0 7.8 0.5 118 chr3R 20433114 intron Gfrl - chr3R 20433173 intron Gfrl - chr3R 20433232 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-440 1786 chr3R 20434825 20434864 chr3R 20435030 20435069 4 205 5.5 1.0 3.2 1.0 244 chr3R 20434825 intron Gfrl - chr3R 20434947 intron Gfrl - chr3R 20435069 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-440 1787 chr3R 20469299 20469476 chr3R 20469402 20469576 4 100 0.0 0.0 0.0 4.0 277 chr3R 20469299 intron Gfrl - chr3R 20469438 intron Gfrl - chr3R 20469576 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-440 1788 chr3R 20499849 20499889 chr3R 20499959 20499981 12 102 13.5 12.5 13.0 0.9 132 chr3R 20499849 intergenic Dic2 - chr3R 20499915 intergenic Dic2 - chr3R 20499981 intergenic Dic2 - chr3R_12_20495001 chr3R_20495001 RAL-440 1789 chr3R 20506588 20506600 chr3R 20507411 20507418 BS 4 818 4.0 5.5 4.8 0.7 830 chr3R 20506588 intergenic Or92a + chr3R 20507003 intergenic CG4288 - chr3R 20507418 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-440 1790 chr3R 20506603 20506610 chr3R 20507410 20507415 BS 4 810 4.0 5.0 4.5 0.7 812 chr3R 20506603 intergenic Or92a + chr3R 20507009 intergenic CG4288 - chr3R 20507415 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-440 1791 chr3R 20545985 20546009 chr3R 20546061 20546105 7 87 11.0 12.0 11.5 0.6 120 chr3R 20545985 intron Stat92E - chr3R 20546045 intron Stat92E - chr3R 20546105 intron Stat92E - chr3R_7_20545001 chr3R_20545001 RAL-440 1792 chr3R 20594488 20594512 chr3R 20594596 20594610 5 106 6.0 4.0 5.0 0.8 122 chr3R 20594488 intron bon + chr3R 20594549 intron bon + chr3R 20594610 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-440 1793 chr3R 20663729 20663738 chr3R 20663814 20663842 4 105 14.5 16.0 15.2 0.2 113 chr3R 20663729 intergenic not near genes chr3R 20663786 intergenic not near genes chr3R 20663842 intergenic not near genes chr3R_4_20660001 chr3R_20660001 RAL-440 1794 chr3R 20733292 20733317 chr3R 20733360 20733409 8 84 9.5 9.0 9.2 0.8 117 chr3R 20733292 intergenic not near genes chr3R 20733350 intergenic not near genes chr3R 20733409 intergenic not near genes chr3R_8_20730001 chr3R_20730001 RAL-440 1795 chr3R 20733761 20733776 chr3R 20733852 20733869 5 97 19.5 13.0 16.2 0.3 108 chr3R 20733761 intergenic not near genes chr3R 20733815 intergenic not near genes chr3R 20733869 intergenic not near genes chr3R_5_20730001 chr3R_20730001 RAL-440 1796 chr3R 20771706 20771724 chr3R 20771790 20771825 8 89 0.0 5.5 2.8 2.1 119 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771766 intron,intron Syp +,Takl1 - chr3R 20771825 intron,exon Syp +,Takl1 - chr3R_8_20770001 chr3R_20770001 RAL-440 1797 chr3R 20854499 20854509 chr3R 20859287 20859318 Doc 4 4796 14.5 7.5 11.0 0.3 4819 chr3R 20854499 intron Ir93a - chr3R 20856908 intron Ir93a - chr3R 20859318 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-440 1798 chr3R 20870238 20870269 chr3R 20870341 20870374 6 100 12.0 12.5 12.2 0.5 136 chr3R 20870238 intergenic not near genes chr3R 20870306 intergenic not near genes chr3R 20870374 intergenic not near genes chr3R_6_20870001 chr3R_20870001 RAL-440 1799 chr3R 20942796 20942831 chr3R 20942885 20942922 4 88 4.5 5.5 5.0 0.7 126 chr3R 20942796 intron CG31191 - chr3R 20942859 intron CG31191 - chr3R 20942922 intron CG31191 - chr3R_4_20940001 chr3R_20940001 RAL-440 1800 chr3R 21015247 21015286 chr3R 21015352 21015387 5 105 6.5 9.5 8.0 0.6 140 chr3R 21015247 3` UTR Calx + chr3R 21015317 3` UTR Calx + chr3R 21015387 3` UTR Calx + chr3R_5_21015001 chr3R_21015001 RAL-440 1801 chr3R 21074809 21074830 chr3R 21075015 21075049 8 217 1.0 3.5 2.2 2.5 240 chr3R 21074809 intron dmrt93B + chr3R 21074929 intron dmrt93B + chr3R 21075049 intron dmrt93B + chr3R_8_21070001 chr3R_21070001 RAL-440 1802 chr3R 21108023 21108056 chr3R 21108304 21108329 6 279 4.0 3.5 3.8 1.2 306 chr3R 21108023 intergenic Sec15 -,rtet + chr3R 21108176 intergenic Sec15 -,rtet + chr3R 21108329 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-440 1803 chr3R 21141667 21141699 chr3R 21150161 21150184 Tirant 5 8484 4.5 4.0 4.2 1.0 8517 chr3R 21141667 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150184 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-440 1804 chr3R 21154532 21154587 chr3R 21154755 21154800 14 226 2.0 0.0 1.0 7.0 268 chr3R 21154532 intron SNF4Agamma + chr3R 21154666 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_14_21150001 chr3R_21150001 RAL-440 1805 chr3R 21189311 21189358 chr3R 21189437 21189455 4 112 8.5 3.0 5.8 0.6 144 chr3R 21189311 intron SNF4Agamma + chr3R 21189383 intron SNF4Agamma + chr3R 21189455 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-440 1806 chr3R 21203690 21203727 chr3R 21203791 21203819 7 97 14.5 20.5 17.5 0.4 129 chr3R 21203690 intron SNF4Agamma + chr3R 21203754 intron SNF4Agamma + chr3R 21203819 intron SNF4Agamma + chr3R_7_21200001 chr3R_21200001 RAL-440 1807 chr3R 21245835 21245852 chr3R 21245939 21245954 4 104 3.5 6.5 5.0 0.7 119 chr3R 21245835 intergenic CG5892 + chr3R 21245894 intergenic CG5892 + chr3R 21245954 intergenic not near genes chr3R_4_21245001 chr3R_21245001 RAL-440 1808 chr3R 21322970 21322983 chr3R 21323058 21323065 5 84 5.0 2.5 3.8 1.0 95 chr3R 21322970 intron CG16791 - chr3R 21323018 intron CG16791 - chr3R 21323065 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-440 1809 chr3R 21422511 21422557 chr3R 21422604 21422633 11 87 8.0 6.0 7.0 1.4 122 chr3R 21422511 intron lbl - chr3R 21422572 intron lbl - chr3R 21422633 intron lbl - chr3R_11_21420001 chr3R_21420001 RAL-440 1810 chr3R 21472019 21472031 chr3R 21472102 21472113 5 90 2.5 6.0 4.2 1.0 94 chr3R 21472019 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472113 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-440 1811 chr3R 21519972 21520137 chr3R 21520087 21520231 9 109 1.5 1.5 1.5 3.6 259 chr3R 21519972 intergenic not near genes chr3R 21520102 intergenic not near genes chr3R 21520231 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-440 1812 chr3R 21586412 21586446 chr3R 21586504 21586520 7 94 14.0 13.5 13.8 0.5 108 chr3R 21586412 intron InR - chr3R 21586466 intron InR - chr3R 21586520 intron InR - chr3R_7_21585001 chr3R_21585001 RAL-440 1813 chr3R 21592828 21592841 chr3R 21592929 21592938 4 99 5.5 7.5 6.5 0.5 110 chr3R 21592828 intron,intron InR -,CR43653 + chr3R 21592883 intron,intron InR -,CR43653 + chr3R 21592938 intron,intron InR -,CR43653 + chr3R_4_21590001 chr3R_21590001 RAL-440 1814 chr3R 21634218 21634248 chr3R 21634313 21634349 4 97 7.5 10.0 8.8 0.4 131 chr3R 21634218 intron E2f - chr3R 21634284 intron E2f - chr3R 21634349 intron E2f - chr3R_4_21630001 chr3R_21630001 RAL-440 1815 chr3R 21761115 21761151 chr3R 21768514 21768539 mdg1 7 7399 2.5 4.5 3.5 1.6 7424 chr3R 21761115 exon CG42335 + chr3R 21764827 intron CG42335 + chr3R 21768539 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-440 1816 chr3R 21898450 21898465 chr3R 21898541 21898563 5 99 6.0 4.0 5.0 0.8 113 chr3R 21898450 intron CG6678 + chr3R 21898506 intron CG6678 + chr3R 21898563 intron CG6678 + chr3R_5_21895001 chr3R_21895001 RAL-440 1817 chr3R 21903618 21903635 chr3R 21903735 21903752 4 117 7.0 10.0 8.5 0.4 134 chr3R 21903618 intron CG6678 + chr3R 21903685 intron CG6678 + chr3R 21903752 intron CG6678 + chr3R_4_21900001 chr3R_21900001 RAL-440 1818 chr3R 17389054 17389054 chr3R 21907534 21907534 5 4518480 6.5 20.5 13.5 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-440 1819 chr3R 21907534 21907534 chr3R 28831801 28831802 17 6924268 23.0 21.0 22.0 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-440 1820 chr3R 21907535 21907535 chr3R 28831801 28831802 18 6924267 23.5 21.0 22.2 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-440 1821 chr3R 17389054 17389054 chr3R 21907536 21907536 4 4518482 6.5 20.5 13.5 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-440 1822 chr3R 21907536 21907536 chr3R 28831801 28831802 16 6924266 23.0 21.0 22.0 0.7 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-440 1823 chr3R 21928952 21929002 chr3R 21929063 21929097 10 106 14.0 12.5 13.2 0.7 145 chr3R 21928952 intergenic not near genes chr3R 21929024 intergenic not near genes chr3R 21929097 intergenic not near genes chr3R_10_21925001 chr3R_21925001 RAL-440 1824 chr3R 21939690 21939704 chr3R 21939812 21939831 4 126 10.0 10.5 10.2 0.4 141 chr3R 21939690 intergenic not near genes chr3R 21939760 intergenic not near genes chr3R 21939831 intergenic not near genes chr3R_4_21935001 chr3R_21935001 RAL-440 1825 chr3R 22108366 22108389 chr3R 22108586 22108618 4 230 12.0 9.0 10.5 0.3 252 chr3R 22108366 intron CG5778 - chr3R 22108492 intron CG5778 - chr3R 22108618 intron CG5778 - chr3R_4_22105001 chr3R_22105001 RAL-440 1826 chr3R 22234677 22234710 chr3R 22236003 22236040 pogo 9 1332 2.5 5.0 3.8 1.9 1363 chr3R 22234677 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236040 intron SKIP + chr3R_9_22235001 chr3R_22235001 RAL-440 1827 chr3R 22270062 22270104 chr3R 22270303 22270326 7 230 8.5 6.5 7.5 0.8 264 chr3R 22270062 intron SKIP + chr3R 22270194 intron SKIP + chr3R 22270326 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-440 1828 chr3R 22321646 22321678 chr3R 22321736 22321771 6 93 13.5 9.0 11.2 0.5 125 chr3R 22321646 intron CG34377 - chr3R 22321708 intron CG34377 - chr3R 22321771 intron CG34377 - chr3R_6_22320001 chr3R_22320001 RAL-440 1829 chr3R 22428579 22428599 chr3R 22428655 22428680 5 83 4.5 7.0 5.8 0.7 101 chr3R 22428579 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428680 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-440 1830 chr3R 22433071 22433104 chr3R 22433191 22433208 4 114 7.0 9.5 8.2 0.4 137 chr3R 22433071 intron CG13847 - chr3R 22433140 intron CG13847 - chr3R 22433208 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-440 1831 chr3R 22437786 22437824 chr3R 22437880 22437924 6 93 6.0 7.0 6.5 0.8 138 chr3R 22437786 intergenic not near genes chr3R 22437855 intergenic not near genes chr3R 22437924 intergenic not near genes chr3R_6_22435001 chr3R_22435001 RAL-440 1832 chr3R 22450539 22450579 chr3R 22453183 22453214 NOF 9 2641 3.0 4.5 3.8 1.9 2675 chr3R 22450539 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-440 1833 chr3R 22526295 22526330 chr3R 22526376 22526431 4 86 9.0 6.5 7.8 0.5 136 chr3R 22526295 intron CG5346 - chr3R 22526363 intron CG5346 - chr3R 22526431 intron CG5346 - chr3R_4_22525001 chr3R_22525001 RAL-440 1834 chr3R 22547203 22547230 chr3R 22547346 22547395 6 158 16.0 10.0 13.0 0.4 192 chr3R 22547203 intron AdipoR - chr3R 22547299 intron AdipoR - chr3R 22547395 intron AdipoR - chr3R_6_22545001 chr3R_22545001 RAL-440 1835 chr3R 22591645 22591697 chr3R 22591744 22591780 7 94 10.5 11.0 10.8 0.6 135 chr3R 22591645 intron Efa6 + chr3R 22591712 intron Efa6 + chr3R 22591780 intron Efa6 + chr3R_7_22590001 chr3R_22590001 RAL-440 1836 chr3R 22595179 22595212 chr3R 22595281 22595319 4 102 15.0 21.0 18.0 0.2 140 chr3R 22595179 intron Efa6 + chr3R 22595249 intron Efa6 + chr3R 22595319 intron Efa6 + chr3R_4_22595001 chr3R_22595001 RAL-440 1837 chr3R 22663500 22663539 chr3R 22663594 22663622 12 87 18.0 18.5 18.2 0.6 122 chr3R 22663500 intron wake + chr3R 22663561 intron wake + chr3R 22663622 intron wake + chr3R_12_22660001 chr3R_22660001 RAL-440 1838 chr3R 22684200 22684238 chr3R 22684280 22684315 8 81 5.5 10.0 7.8 0.9 115 chr3R 22684200 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684315 intergenic not near genes chr3R_8_22680001 chr3R_22680001 RAL-440 1839 chr3R 22794512 22794543 chr3R 22794597 22794639 7 89 8.5 9.0 8.8 0.7 127 chr3R 22794512 intergenic CG7029 + chr3R 22794576 intergenic not near genes chr3R 22794639 intergenic not near genes chr3R_7_22790001 chr3R_22790001 RAL-440 1840 chr3R 22797746 22797935 chr3R 22797849 22798050 6 101 6.0 5.5 5.8 0.9 304 chr3R 22797746 intergenic not near genes chr3R 22797898 intergenic not near genes chr3R 22798050 intergenic not near genes chr3R_6_22795001 chr3R_22795001 RAL-440 1841 chr3R 22840816 22840850 chr3R 22841282 22841312 8 469 5.0 14.0 9.5 0.8 496 chr3R 22840816 intergenic not near genes chr3R 22841064 intergenic not near genes chr3R 22841312 intergenic not near genes chr3R_8_22840001 chr3R_22840001 RAL-440 1842 chr3R 22953838 22953860 chr3R 22954491 22954514 4 659 6.5 11.5 9.0 0.4 676 chr3R 22953838 intron klg + chr3R 22954176 intron klg + chr3R 22954514 intron klg + chr3R_4_22950001 chr3R_22950001 RAL-440 1843 chr3R 22974287 22974311 chr3R 22974368 22974399 4 84 4.0 5.0 4.5 0.7 112 chr3R 22974287 intergenic not near genes chr3R 22974343 intergenic not near genes chr3R 22974399 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-440 1844 chr3R 23064177 23064185 chr3R 23064291 23064298 4 112 6.5 4.0 5.2 0.6 121 chr3R 23064177 exon CG17111 - chr3R 23064238 intron CG17111 - chr3R 23064298 exon CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-440 1845 chr3R 23073633 23073687 chr3R 23073741 23073776 5 86 9.0 5.5 7.2 0.6 143 chr3R 23073633 intron CG13830 - chr3R 23073704 intron CG13830 - chr3R 23073776 intron CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-440 1846 chr3R 23075418 23075449 chr3R 23075517 23075548 4 95 8.5 11.5 10.0 0.4 130 chr3R 23075418 intron CG13830 - chr3R 23075483 intron CG13830 - chr3R 23075548 intron CG13830 - chr3R_4_23075001 chr3R_23075001 RAL-440 1847 chr3R 23091250 23091286 chr3R 23091343 23091388 7 95 8.5 6.5 7.5 0.8 138 chr3R 23091250 intron CG13830 - chr3R 23091319 intron CG13830 - chr3R 23091388 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-440 1848 chr3R 23145145 23145191 chr3R 23145242 23145269 5 88 5.0 6.0 5.5 0.8 124 chr3R 23145145 intergenic not near genes chr3R 23145207 intergenic not near genes chr3R 23145269 intergenic not near genes chr3R_5_23145001 chr3R_23145001 RAL-440 1849 chr3R 23161990 23162001 chr3R 23162091 23162104 4 102 9.5 9.0 9.2 0.4 114 chr3R 23161990 intergenic not near genes chr3R 23162047 intergenic not near genes chr3R 23162104 intergenic not near genes chr3R_4_23160001 chr3R_23160001 RAL-440 1850 chr3R 23170475 23170511 chr3R 23170578 23170612 5 102 9.0 14.0 11.5 0.4 137 chr3R 23170475 exon Irk1 + chr3R 23170544 intron Irk1 + chr3R 23170612 intron Irk1 + chr3R_5_23170001 chr3R_23170001 RAL-440 1851 chr3R 23172496 23172534 chr3R 23172626 23172664 4 121 6.0 17.0 11.5 0.3 168 chr3R 23172496 intron Irk1 + chr3R 23172580 intron Irk1 + chr3R 23172664 intron Irk1 + chr3R_4_23170001 chr3R_23170001 RAL-440 1852 chr3R 23182670 23182699 chr3R 23182773 23182785 7 97 2.0 5.5 3.8 1.5 115 chr3R 23182670 intron Irk1 + chr3R 23182728 intron Irk1 + chr3R 23182785 intron Irk1 + chr3R_7_23180001 chr3R_23180001 RAL-440 1853 chr3R 23393571 23393614 chr3R 23393668 23393698 8 100 2.0 4.0 3.0 2.0 127 chr3R 23393571 intergenic not near genes chr3R 23393634 intergenic not near genes chr3R 23393698 intergenic not near genes chr3R_8_23390001 chr3R_23390001 RAL-440 1854 chr3R 23543302 23543319 chr3R 23543399 23543416 4 95 11.5 8.5 10.0 0.4 114 chr3R 23543302 intergenic not near genes chr3R 23543359 intergenic not near genes chr3R 23543416 intergenic not near genes chr3R_4_23540001 chr3R_23540001 RAL-440 1855 chr3R 23558384 23558428 chr3R 23560185 23560226 Bari1 4 1798 1.5 3.0 2.2 1.2 1842 chr3R 23558384 intron beat-IV + chr3R 23559305 intron beat-IV + chr3R 23560226 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-440 1856 chr3R 23593828 23593862 chr3R 23593926 23593970 12 105 8.0 9.0 8.5 1.3 142 chr3R 23593828 exon CG16723 - chr3R 23593899 intron CG16723 - chr3R 23593970 exon CG16723 - chr3R_12_23590001 chr3R_23590001 RAL-440 1857 chr3R 23684717 23684728 chr3R 23685180 23685216 roo 4 474 1.5 4.5 3.0 1.0 499 chr3R 23684717 intron CG18754 + chr3R 23684966 intron CG18754 + chr3R 23685216 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-440 1858 chr3R 23783979 23784015 chr3R 23784091 23784137 4 120 11.0 15.0 13.0 0.3 158 chr3R 23783979 intron mbc + chr3R 23784058 intron mbc + chr3R 23784137 intron mbc + chr3R_4_23780001 chr3R_23780001 RAL-440 1859 chr3R 23835406 23835433 chr3R 23844558 23844603 roo 10 9166 3.0 2.0 2.5 2.9 9197 chr3R 23835406 intron CG34355 + chr3R 23840004 intron CG34355 + chr3R 23844603 intron CG34355 + chr3R_10_23840001 chr3R_23840001 RAL-440 1860 chr3R 23907785 23907821 chr3R 23907883 23907910 8 94 9.0 10.0 9.5 0.8 125 chr3R 23907785 intron sba - chr3R 23907848 intron sba - chr3R 23907910 intron sba - chr3R_8_23905001 chr3R_23905001 RAL-440 1861 chr3R 23944890 23944934 chr3R 23944995 23945010 10 95 4.5 2.5 3.5 2.2 120 chr3R 23944890 intron CG12268 - chr3R 23944950 intron CG12268 - chr3R 23945010 intron CG12268 - chr3R_10_23940001 chr3R_23940001 RAL-440 1862 chr3R 23949035 23949068 chr3R 23949131 23949165 5 93 3.5 4.5 4.0 1.0 130 chr3R 23949035 intergenic not near genes chr3R 23949100 intergenic not near genes chr3R 23949165 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-440 1863 chr3R 24011649 24011658 chr3R 24011752 24011758 6 101 9.5 5.5 7.5 0.7 109 chr3R 24011649 intron KrT95D - chr3R 24011704 intron KrT95D - chr3R 24011758 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-440 1864 chr3R 24011660 24011678 chr3R 24011740 24011763 5 92 4.5 4.0 4.2 1.0 103 chr3R 24011660 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011763 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-440 1865 chr3R 24021620 24021658 chr3R 24021717 24021768 9 104 4.5 2.5 3.5 2.0 148 chr3R 24021620 intron KrT95D - chr3R 24021694 intron KrT95D - chr3R 24021768 intron KrT95D - chr3R_9_24020001 chr3R_24020001 RAL-440 1866 chr3R 24072084 24072122 chr3R 24072524 24072531 jockey 4 438 3.5 3.0 3.2 1.0 447 chr3R 24072084 intron 4EHP - chr3R 24072308 intron 4EHP - chr3R 24072531 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-440 1867 chr3R 24076919 24076947 chr3R 24078386 24078409 hobo 8 1472 6.5 4.0 5.2 1.3 1490 chr3R 24076919 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078409 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-440 1868 chr3R 24096705 24096745 chr3R 24096809 24096847 6 101 14.5 13.0 13.8 0.4 142 chr3R 24096705 intron 4EHP - chr3R 24096776 intron 4EHP - chr3R 24096847 intron 4EHP - chr3R_6_24095001 chr3R_24095001 RAL-440 1869 chr3R 24110566 24110595 chr3R 24110658 24110685 14 97 10.5 12.0 11.2 1.1 119 chr3R 24110566 intron CG13605 - chr3R 24110626 intron CG13605 - chr3R 24110685 intron CG13605 - chr3R_14_24110001 chr3R_24110001 RAL-440 1870 chr3R 24167067 24167094 chr3R 24167166 24167182 6 97 8.0 10.5 9.2 0.6 115 chr3R 24167067 exon Apc2 + chr3R 24167124 intron Apc2 + chr3R 24167182 intron Apc2 + chr3R_6_24165001 chr3R_24165001 RAL-440 1871 chr3R 24207220 24207239 chr3R 24212295 24212308 flea 5 5078 3.5 7.5 5.5 0.8 5088 chr3R 24207220 intron twin - chr3R 24209764 intron twin - chr3R 24212308 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-440 1872 chr3R 24261170 24261213 chr3R 24261268 24261289 6 91 10.5 12.5 11.5 0.5 119 chr3R 24261170 intron jar - chr3R 24261230 intron jar - chr3R 24261289 intron jar - chr3R_6_24260001 chr3R_24260001 RAL-440 1873 chr3R 24327562 24327562 chr3R 24329006 24329039 7 1456 14.0 31.5 22.8 0.3 1477 chr3R 24327562 exon BRWD3 + chr3R 24328300 3` UTR BRWD3 + chr3R 24329039 exon CG5728 - chr3R_7_24325001 chr3R_24325001 RAL-440 1874 chr3R 24424035 24424061 chr3R 24424273 24424308 4 244 9.5 11.5 10.5 0.3 273 chr3R 24424035 intron nAChRalpha1 - chr3R 24424172 intron nAChRalpha1 - chr3R 24424308 intron nAChRalpha1 - chr3R_4_24420001 chr3R_24420001 RAL-440 1875 chr3R 24426269 24426308 chr3R 24426541 24426585 5 264 8.5 13.5 11.0 0.4 316 chr3R 24426269 intron nAChRalpha1 - chr3R 24426427 intron nAChRalpha1 - chr3R 24426585 intron nAChRalpha1 - chr3R_5_24425001 chr3R_24425001 RAL-440 1876 chr3R 24431611 24431620 chr3R 24431701 24431717 4 92 11.0 9.0 10.0 0.4 106 chr3R 24431611 intron nAChRalpha1 - chr3R 24431664 intron nAChRalpha1 - chr3R 24431717 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-440 1877 chr3R 24433332 24433374 chr3R 24433495 24433539 10 161 5.0 7.5 6.2 1.4 207 chr3R 24433332 intron nAChRalpha1 - chr3R 24433436 intron nAChRalpha1 - chr3R 24433539 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-440 1878 chr3R 24434239 24434268 chr3R 24434322 24434366 4 89 8.0 6.5 7.2 0.5 127 chr3R 24434239 intron nAChRalpha1 - chr3R 24434302 intron nAChRalpha1 - chr3R 24434366 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-440 1879 chr3R 24444158 24444207 chr3R 24444337 24444381 5 169 6.0 4.5 5.2 0.8 223 chr3R 24444158 intron nAChRalpha1 - chr3R 24444270 intron nAChRalpha1 - chr3R 24444381 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-440 1880 chr3R 24493044 24493069 chr3R 24493150 24493161 6 100 7.0 7.5 7.2 0.7 117 chr3R 24493044 intergenic not near genes chr3R 24493102 intergenic not near genes chr3R 24493161 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-440 1881 chr3R 24493276 24493305 chr3R 24493517 24493545 BS 6 241 5.5 9.0 7.2 0.7 269 chr3R 24493276 intergenic not near genes chr3R 24493410 intergenic not near genes chr3R 24493545 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-440 1882 chr3R 24501956 24501976 chr3R 24502051 24502067 4 98 8.0 9.5 8.8 0.4 111 chr3R 24501956 intergenic not near genes chr3R 24502012 intergenic not near genes chr3R 24502067 intergenic not near genes chr3R_4_24500001 chr3R_24500001 RAL-440 1883 chr3R 24624368 24624389 chr3R 24624468 24624473 6 97 11.0 13.5 12.2 0.5 105 chr3R 24624368 intron Syx18 - chr3R 24624420 intron Syx18 - chr3R 24624473 intron Syx18 - chr3R_6_24620001 chr3R_24620001 RAL-440 1884 chr3R 24667598 24667628 chr3R 24667694 24667719 5 90 4.0 0.0 2.0 1.7 121 chr3R 24667598 intron slo + chr3R 24667658 intron slo + chr3R 24667719 intron slo + chr3R_5_24665001 chr3R_24665001 RAL-440 1885 chr3R 24670153 24670193 chr3R 24670253 24670297 11 98 1.5 4.0 2.8 2.9 144 chr3R 24670153 intron slo + chr3R 24670225 intron slo + chr3R 24670297 intron slo + chr3R_11_24670001 chr3R_24670001 RAL-440 1886 chr3R 24739918 24739932 chr3R 24740016 24740063 4 120 10.5 7.5 9.0 0.4 145 chr3R 24739918 intron tok + chr3R 24739990 intron tok + chr3R 24740063 intron tok + chr3R_4_24735001 chr3R_24735001 RAL-440 1887 chr3R 24741065 24741115 chr3R 24741181 24741232 11 108 10.0 9.0 9.5 1.0 167 chr3R 24741065 intron tok + chr3R 24741148 intron tok + chr3R 24741232 intron tok + chr3R_11_24740001 chr3R_24740001 RAL-440 1888 chr3R 24743017 24743063 chr3R 24743114 24743159 5 100 6.0 8.5 7.2 0.6 142 chr3R 24743017 intron tok + chr3R 24743088 intron tok + chr3R 24743159 intron tok + chr3R_5_24740001 chr3R_24740001 RAL-440 1889 chr3R 24789974 24790013 chr3R 24790134 24790163 4 157 7.0 5.0 6.0 0.6 189 chr3R 24789974 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790163 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-440 1890 chr3R 24925317 24925345 chr3R 24925400 24925412 4 83 14.0 13.0 13.5 0.3 95 chr3R 24925317 5` UTR Trf4-2 + chr3R 24925364 5` UTR Trf4-2 + chr3R 24925412 5` UTR Trf4-2 + chr3R_4_24925001 chr3R_24925001 RAL-440 1891 chr3R 24927139 24927148 chr3R 24931915 24931950 Doc 5 4792 4.5 1.5 3.0 1.2 4811 chr3R 24927139 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931950 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-440 1892 chr3R 24938808 24938825 chr3R 24938884 24938899 5 80 5.5 9.0 7.2 0.6 91 chr3R 24938808 3` UTR ssh - chr3R 24938854 3` UTR ssh - chr3R 24938899 3` UTR ssh - chr3R_5_24935001 chr3R_24935001 RAL-440 1893 chr3R 25004896 25004922 chr3R 25004993 25005009 6 94 0.5 2.0 1.2 2.7 113 chr3R 25004896 intron tnc + chr3R 25004952 intron tnc + chr3R 25005009 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-440 1894 chr3R 25027520 25027567 chr3R 25027753 25027786 8 222 4.5 11.0 7.8 0.9 266 chr3R 25027520 intron Hr96 + chr3R 25027653 intron Hr96 + chr3R 25027786 intron Hr96 + chr3R_8_25025001 chr3R_25025001 RAL-440 1895 chr3R 25053107 25053162 chr3R 25053216 25053246 4 96 9.0 13.0 11.0 0.3 139 chr3R 25053107 intergenic CG11791 +,CG31109 - chr3R 25053176 intergenic CG11791 +,CG31109 - chr3R 25053246 intergenic CG31109 -,CG11791 + chr3R_4_25050001 chr3R_25050001 RAL-440 1896 chr3R 25159494 25159529 chr3R 25159597 25159625 11 97 3.5 5.5 4.5 2.0 131 chr3R 25159494 intergenic not near genes chr3R 25159560 intergenic not near genes chr3R 25159625 intergenic not near genes chr3R_11_25155001 chr3R_25155001 RAL-440 1897 chr3R 25239183 25239211 chr3R 25239293 25239302 4 101 15.0 13.0 14.0 0.3 119 chr3R 25239183 intergenic CG11852 + chr3R 25239242 intergenic CG11852 + chr3R 25239302 intergenic CG11852 + chr3R_4_25235001 chr3R_25235001 RAL-440 1898 chr3R 25300661 25300702 chr3R 25300786 25300833 6 126 12.5 18.5 15.5 0.4 172 chr3R 25300661 intergenic CG13659 + chr3R 25300747 intergenic CG13659 + chr3R 25300833 intergenic CG13659 + chr3R_6_25300001 chr3R_25300001 RAL-440 1899 chr3R 25368454 25368498 chr3R 25368591 25368608 11 127 4.0 0.0 2.0 3.7 154 chr3R 25368454 intron Fur1 - chr3R 25368531 intron Fur1 - chr3R 25368608 intron Fur1 - chr3R_11_25365001 chr3R_25365001 RAL-440 1900 chr3R 25374841 25374855 chr3R 25374932 25374949 5 92 6.5 5.0 5.8 0.7 108 chr3R 25374841 intron Fur1 - chr3R 25374895 intron Fur1 - chr3R 25374949 intron Fur1 - chr3R_5_25370001 chr3R_25370001 RAL-440 1901 chr3R 25436477 25436514 chr3R 25436584 25436609 8 93 10.5 10.5 10.5 0.7 132 chr3R 25436477 intron Fur1 - chr3R 25436543 intron Fur1 - chr3R 25436609 intron Fur1 - chr3R_8_25435001 chr3R_25435001 RAL-440 1902 chr3R 25464491 25464525 chr3R 25464807 25464855 6 323 11.0 7.5 9.2 0.6 364 chr3R 25464491 intron Fur1 - chr3R 25464673 intron Fur1 - chr3R 25464855 intron Fur1 - chr3R_6_25460001 chr3R_25460001 RAL-440 1903 chr3R 25544842 25544882 chr3R 25544948 25544972 5 101 7.5 7.5 7.5 0.6 130 chr3R 25544842 intron msi + chr3R 25544907 intron msi + chr3R 25544972 intron msi + chr3R_5_25540001 chr3R_25540001 RAL-440 1904 chr3R 25557322 25557335 chr3R 25557437 25557448 5 115 9.5 14.0 11.8 0.4 126 chr3R 25557322 intron msi + chr3R 25557385 intron msi + chr3R 25557448 intron msi + chr3R_5_25555001 chr3R_25555001 RAL-440 1905 chr3R 25559732 25559763 chr3R 25559824 25559849 7 91 13.0 12.0 12.5 0.5 117 chr3R 25559732 intron msi + chr3R 25559790 intron msi + chr3R 25559849 intron msi + chr3R_7_25555001 chr3R_25555001 RAL-440 1906 chr3R 25642587 25642615 chr3R 25642692 25642726 7 105 19.0 15.0 17.0 0.4 139 chr3R 25642587 intron jigr1 + chr3R 25642656 intron jigr1 + chr3R 25642726 intron jigr1 + chr3R_7_25640001 chr3R_25640001 RAL-440 1907 chr3R 25650567 25650603 chr3R 25650656 25650707 5 99 9.5 11.5 10.5 0.4 140 chr3R 25650567 intergenic jigr1 + chr3R 25650637 intergenic jigr1 + chr3R 25650707 intergenic jigr1 + chr3R_5_25650001 chr3R_25650001 RAL-440 1908 chr3R 25658745 25658783 chr3R 25658843 25658882 6 92 11.5 13.5 12.5 0.4 137 chr3R 25658745 intron Tnks - chr3R 25658814 intron Tnks - chr3R 25658882 intron Tnks - chr3R_6_25655001 chr3R_25655001 RAL-440 1909 chr3R 25661263 25661303 chr3R 25661348 25661402 4 95 6.5 3.0 4.8 0.7 139 chr3R 25661263 5` UTR Tnks - chr3R 25661332 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661402 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_4_25660001 chr3R_25660001 RAL-440 1910 chr3R 25671239 25671274 chr3R 25671340 25671376 8 105 3.5 2.5 3.0 2.0 137 chr3R 25671239 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671376 intron Lgr3 + chr3R_8_25670001 chr3R_25670001 RAL-440 1911 chr3R 25689110 25689153 chr3R 25689234 25689262 5 117 10.0 7.5 8.8 0.5 152 chr3R 25689110 intergenic not near genes chr3R 25689186 intergenic not near genes chr3R 25689262 intergenic not near genes chr3R_5_25685001 chr3R_25685001 RAL-440 1912 chr3R 25725814 25725860 chr3R 25734987 25735038 roo 11 9171 2.0 2.0 2.0 3.7 9224 chr3R 25725814 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735038 intron LpR2 - chr3R_11_25730001 chr3R_25730001 RAL-440 1913 chr3R 25831036 25831074 chr3R 25831124 25831136 8 85 10.0 7.5 8.8 0.8 100 chr3R 25831036 intergenic Mst57Db - chr3R 25831086 intergenic Mst57Db -,Mst57Da - chr3R 25831136 intergenic Mst57Db -,Mst57Da - chr3R_8_25830001 chr3R_25830001 RAL-440 1914 chr3R 25832712 25832721 chr3R 25841884 25841912 roo 6 9186 3.0 5.0 4.0 1.2 9200 chr3R 25832712 exon alpha4GT2 + chr3R 25837312 intron alpha4GT2 + chr3R 25841912 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-440 1915 chr3R 25956455 25956467 chr3R 25956558 25956563 4 102 14.5 7.5 11.0 0.3 108 chr3R 25956455 intergenic CCAP-R - chr3R 25956509 intergenic CCAP-R - chr3R 25956563 intergenic CCAP-R - chr3R_4_25955001 chr3R_25955001 RAL-440 1916 chr3R 25956471 25956488 chr3R 25956557 25956561 4 82 13.0 7.5 10.2 0.4 90 chr3R 25956471 intergenic CCAP-R - chr3R 25956516 intergenic CCAP-R - chr3R 25956561 intergenic CCAP-R - chr3R_4_25955001 chr3R_25955001 RAL-440 1917 chr3R 25983687 25983710 chr3R 25983792 25983796 4 96 17.5 13.0 15.2 0.2 109 chr3R 25983687 exon Nf1 + chr3R 25983742 intron Nf1 + chr3R 25983796 intron Nf1 + chr3R_4_25980001 chr3R_25980001 RAL-440 1918 chr3R 26093845 26093869 chr3R 26093928 26093946 6 84 3.0 6.5 4.8 1.0 101 chr3R 26093845 intron dys - chr3R 26093896 intron dys - chr3R 26093946 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-440 1919 chr3R 26121953 26121973 chr3R 26122044 26122090 4 100 6.0 9.0 7.5 0.5 137 chr3R 26121953 intron CG31324 + chr3R 26122022 intron CG31324 + chr3R 26122090 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-440 1920 chr3R 26122458 26122478 chr3R 26122541 26122570 6 84 4.5 6.5 5.5 0.9 112 chr3R 26122458 intron CG31324 + chr3R 26122514 intron CG31324 + chr3R 26122570 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-440 1921 chr3R 26126268 26126291 chr3R 26126376 26126416 5 114 2.0 6.5 4.2 1.0 148 chr3R 26126268 intron CG31324 + chr3R 26126342 intron CG31324 + chr3R 26126416 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-440 1922 chr3R 26143074 26143101 chr3R 26143170 26143203 6 100 15.0 17.5 16.2 0.3 129 chr3R 26143074 intergenic not near genes chr3R 26143138 intergenic not near genes chr3R 26143203 intergenic not near genes chr3R_6_26140001 chr3R_26140001 RAL-440 1923 chr3R 26144681 26144721 chr3R 26144772 26144811 7 91 22.5 19.0 20.8 0.3 130 chr3R 26144681 intergenic not near genes chr3R 26144746 intergenic not near genes chr3R 26144811 intergenic not near genes chr3R_7_26140001 chr3R_26140001 RAL-440 1924 chr3R 26210433 26210459 chr3R 26210649 26210675 4 216 7.5 11.0 9.2 0.4 242 chr3R 26210433 intergenic CR44320 + chr3R 26210554 intergenic CR44320 + chr3R 26210675 intergenic CR44320 + chr3R_4_26210001 chr3R_26210001 RAL-440 1925 chr3R 26241422 26241439 chr3R 26241525 26241544 4 101 8.5 9.0 8.8 0.4 122 chr3R 26241422 intron CR42745 + chr3R 26241483 intron CR42745 + chr3R 26241544 intron CR42745 + chr3R_4_26240001 chr3R_26240001 RAL-440 1926 chr3R 26265810 26265842 chr3R 26265901 26265950 7 97 12.0 11.5 11.8 0.5 140 chr3R 26265810 intron CG6154 + chr3R 26265880 intron CG6154 + chr3R 26265950 intron CG6154 + chr3R_7_26265001 chr3R_26265001 RAL-440 1927 chr3R 26294722 26294734 chr3R 26294805 26294832 4 94 10.5 10.0 10.2 0.4 110 chr3R 26294722 intergenic not near genes chr3R 26294777 intergenic not near genes chr3R 26294832 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-440 1928 chr3R 26307793 26307833 chr3R 26307898 26307924 8 90 9.5 11.0 10.2 0.7 131 chr3R 26307793 intergenic not near genes chr3R 26307858 intergenic not near genes chr3R 26307924 intergenic not near genes chr3R_8_26305001 chr3R_26305001 RAL-440 1929 chr3R 26339211 26339259 chr3R 26339326 26339374 6 110 8.5 7.0 7.8 0.7 163 chr3R 26339211 intron CG33970 + chr3R 26339292 intron CG33970 + chr3R 26339374 intron CG33970 + chr3R_6_26335001 chr3R_26335001 RAL-440 1930 chr3R 26376316 26376358 chr3R 26385485 26385528 roo 12 9169 3.5 2.0 2.8 3.2 9212 chr3R 26376316 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385528 intergenic not near genes chr3R_12_26380001 chr3R_26380001 RAL-440 1931 chr3R 26405922 26405932 chr3R 26406017 26406026 5 93 0.5 2.0 1.2 2.3 104 chr3R 26405922 intergenic not near genes chr3R 26405974 intergenic not near genes chr3R 26406026 intergenic not near genes chr3R_5_26405001 chr3R_26405001 RAL-440 1932 chr3R 26453223 26453273 chr3R 26453323 26453376 4 86 8.0 11.0 9.5 0.4 153 chr3R 26453223 exon CG5447 + chr3R 26453300 intron CG5447 + chr3R 26453376 intron CG5447 + chr3R_4_26450001 chr3R_26450001 RAL-440 1933 chr3R 26510511 26510532 chr3R 26519581 26519606 roo 6 9070 3.5 6.0 4.8 1.0 9095 chr3R 26510511 intron plum - chr3R 26515058 intron plum - chr3R 26519606 intron,5` UTR plum -,CR45226 + chr3R_6_26515001 chr3R_26515001 RAL-440 1934 chr3R 26529336 26529371 chr3R 26529429 26529474 9 94 12.5 9.0 10.8 0.8 138 chr3R 26529336 intron plum - chr3R 26529405 intron plum - chr3R 26529474 intron plum - chr3R_9_26525001 chr3R_26525001 RAL-440 1935 chr3R 26558314 26558358 chr3R 26565637 26565650 Stalker4 11 7314 5.5 1.0 3.2 2.6 7336 chr3R 26558314 intron scrib + chr3R 26561982 intron scrib + chr3R 26565650 intron scrib + chr3R_11_26560001 chr3R_26560001 RAL-440 1936 chr3R 26642722 26642760 chr3R 26643123 26643155 jockey 11 405 4.5 7.5 6.0 1.6 433 chr3R 26642722 intergenic not near genes chr3R 26642938 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_11_26640001 chr3R_26640001 RAL-440 1937 chr3R 26651525 26651543 chr3R 26651610 26651636 4 82 13.0 12.5 12.8 0.3 111 chr3R 26651525 intron beat-VII - chr3R 26651580 intron beat-VII - chr3R 26651636 intron beat-VII - chr3R_4_26650001 chr3R_26650001 RAL-440 1938 chr3R 26669650 26669689 chr3R 26669752 26669765 4 91 6.0 6.5 6.2 0.6 115 chr3R 26669650 intron beat-VII - chr3R 26669708 intron beat-VII - chr3R 26669765 intron beat-VII - chr3R_4_26665001 chr3R_26665001 RAL-440 1939 chr3R 26682597 26682643 chr3R 26682736 26682784 5 134 3.5 8.5 6.0 0.7 187 chr3R 26682597 intergenic not near genes chr3R 26682690 intergenic not near genes chr3R 26682784 intergenic not near genes chr3R_5_26680001 chr3R_26680001 RAL-440 1940 chr3R 26703247 26703302 chr3R 26703363 26703410 6 106 11.0 6.5 8.8 0.6 163 chr3R 26703247 intron amon - chr3R 26703328 intron amon - chr3R 26703410 intron amon - chr3R_6_26700001 chr3R_26700001 RAL-440 1941 chr3R 26706121 26706145 chr3R 26706200 26706238 7 85 13.0 7.0 10.0 0.6 117 chr3R 26706121 intron amon - chr3R 26706180 intron amon - chr3R 26706238 intron amon - chr3R_7_26705001 chr3R_26705001 RAL-440 1942 chr3R 26710818 26710856 chr3R 26710913 26710959 8 97 6.0 6.0 6.0 1.1 141 chr3R 26710818 intron amon - chr3R 26710888 intron amon - chr3R 26710959 intron amon - chr3R_8_26710001 chr3R_26710001 RAL-440 1943 chr3R 26770221 26770271 chr3R 26770318 26770367 12 93 3.0 2.5 2.8 3.2 146 chr3R 26770221 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770367 intergenic not near genes chr3R_12_26770001 chr3R_26770001 RAL-440 1944 chr3R 26810540 26810576 chr3R 26811039 26811076 roo 13 500 3.5 7.0 5.2 2.1 536 chr3R 26810540 intron Tl + chr3R 26810808 intron Tl + chr3R 26811076 intron Tl + chr3R_13_26810001 chr3R_26810001 RAL-440 1945 chr3R 26857229 26857278 chr3R 26857344 26857393 4 115 12.0 11.0 11.5 0.3 164 chr3R 26857229 intron Lerp - chr3R 26857311 intron Lerp - chr3R 26857393 intron Lerp - chr3R_4_26855001 chr3R_26855001 RAL-440 1946 chr3R 26896771 26896807 chr3R 26896864 26896905 5 95 4.5 5.5 5.0 0.8 134 chr3R 26896771 intron T48 + chr3R 26896838 intron T48 + chr3R 26896905 intron T48 + chr3R_5_26895001 chr3R_26895001 RAL-440 1947 chr3R 27007389 27007434 chr3R 27016542 27016546 roo 7 9140 4.0 2.5 3.2 1.7 9157 chr3R 27007389 intron RYa-R + chr3R 27011968 intron RYa-R + chr3R 27016546 intron RYa-R + chr3R_7_27010001 chr3R_27010001 RAL-440 1948 chr3R 27027671 27027721 chr3R 27027765 27027780 5 92 7.5 7.0 7.2 0.6 109 chr3R 27027671 intron RYa-R + chr3R 27027726 intron RYa-R + chr3R 27027780 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-440 1949 chr3R 27028734 27028754 chr3R 27028810 27028853 7 89 3.0 3.5 3.2 1.7 119 chr3R 27028734 intron RYa-R + chr3R 27028794 intron RYa-R + chr3R 27028853 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-440 1950 chr3R 27101542 27101559 chr3R 27101655 27101679 4 114 7.5 9.5 8.5 0.4 137 chr3R 27101542 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101679 exon CG17189 + chr3R_4_27100001 chr3R_27100001 RAL-440 1951 chr3R 27107160 27107187 chr3R 27107384 27107416 10 236 7.5 12.5 10.0 0.9 256 chr3R 27107160 intergenic not near genes chr3R 27107288 intergenic not near genes chr3R 27107416 intergenic not near genes chr3R_10_27105001 chr3R_27105001 RAL-440 1952 chr3R 27140506 27140547 chr3R 27148126 27148156 412 14 7615 9.5 6.5 8.0 1.6 7650 chr3R 27140506 intron CG6051 - chr3R 27144331 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-440 1953 chr3R 27342791 27342817 chr3R 27351384 27351418 Tirant 11 8594 3.5 7.0 5.2 1.8 8627 chr3R 27342791 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351418 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-440 1954 chr3R 27355560 27355576 chr3R 27355637 27355661 4 84 8.0 10.0 9.0 0.4 101 chr3R 27355560 intron CG42534 + chr3R 27355610 intron CG42534 + chr3R 27355661 intron CG42534 + chr3R_4_27355001 chr3R_27355001 RAL-440 1955 chr3R 27377450 27377502 chr3R 27377558 27377594 4 90 4.5 5.0 4.8 0.7 144 chr3R 27377450 3` UTR side - chr3R 27377522 3` UTR side - chr3R 27377594 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-440 1956 chr3R 27452572 27452609 chr3R 27452769 27452772 4 188 8.0 7.5 7.8 0.5 200 chr3R 27452572 intergenic not near genes chr3R 27452672 intergenic not near genes chr3R 27452772 intergenic not near genes chr3R_4_27450001 chr3R_27450001 RAL-440 1957 chr3R 27473900 27473911 chr3R 27473976 27473988 4 77 8.0 6.0 7.0 0.5 88 chr3R 27473900 intergenic not near genes chr3R 27473944 intergenic not near genes chr3R 27473988 intergenic not near genes chr3R_4_27470001 chr3R_27470001 RAL-440 1958 chr3R 27473918 27473923 chr3R 27473974 27473993 4 74 8.0 6.5 7.2 0.5 75 chr3R 27473918 intergenic not near genes chr3R 27473956 intergenic not near genes chr3R 27473993 intergenic not near genes chr3R_4_27470001 chr3R_27470001 RAL-440 1959 chr3R 27492369 27492407 chr3R 27492467 27492512 5 98 10.0 9.0 9.5 0.5 143 chr3R 27492369 intergenic not near genes chr3R 27492440 intergenic not near genes chr3R 27492512 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-440 1960 chr3R 27496578 27496627 chr3R 27496697 27496744 6 120 1.5 2.0 1.8 2.1 166 chr3R 27496578 intergenic not near genes chr3R 27496661 intergenic not near genes chr3R 27496744 intergenic not near genes chr3R_6_27495001 chr3R_27495001 RAL-440 1961 chr3R 27547676 27547704 chr3R 27554337 27554355 5 6658 19.5 26.5 23.0 0.2 6679 chr3R 27547676 intergenic Klp98A -,Gr98d + chr3R 27551016 exon Klp98A - chr3R 27554355 intron Klp98A - chr3R_5_27550001 chr3R_27550001 RAL-440 1962 chr3R 27574097 27574131 chr3R 27574516 27574522 4 412 14.0 11.5 12.8 0.3 425 chr3R 27574097 intron wdb - chr3R 27574310 intron wdb - chr3R 27574522 intron wdb - chr3R_4_27570001 chr3R_27570001 RAL-440 1963 chr3R 27622803 27622855 chr3R 27622910 27622962 9 97 15.5 15.5 15.5 0.5 159 chr3R 27622803 intron Tusp + chr3R 27622882 intron Tusp + chr3R 27622962 intron Tusp + chr3R_9_27620001 chr3R_27620001 RAL-440 1964 chr3R 27628842 27628877 chr3R 27629229 27629230 10 377 13.5 2.5 8.0 1.1 388 chr3R 27628842 intron Tusp + chr3R 27629036 intron Tusp + chr3R 27629230 intron Tusp + chr3R_10_27625001 chr3R_27625001 RAL-440 1965 chr3R 27648826 27648867 chr3R 27648923 27648940 7 84 13.0 9.0 11.0 0.6 114 chr3R 27648826 intron tau - chr3R 27648883 intron tau - chr3R 27648940 intron tau - chr3R_7_27645001 chr3R_27645001 RAL-440 1966 chr3R 27721478 27721509 chr3R 27721559 27721606 6 87 10.0 9.5 9.8 0.6 128 chr3R 27721478 intergenic not near genes chr3R 27721542 intergenic not near genes chr3R 27721606 intergenic not near genes chr3R_6_27720001 chr3R_27720001 RAL-440 1967 chr3R 27725549 27725597 chr3R 27731011 27731053 I-element 10 5457 4.5 2.0 3.2 2.4 5504 chr3R 27725549 intergenic not near genes chr3R 27728301 intergenic not near genes chr3R 27731053 intergenic not near genes chr3R_10_27725001 chr3R_27725001 RAL-440 1968 chr3R 27799911 27799963 chr3R 27800018 27800047 9 96 3.5 1.5 2.5 2.6 136 chr3R 27799911 intron CG34353 - chr3R 27799979 intron CG34353 - chr3R 27800047 intron CG34353 - chr3R_9_27795001 chr3R_27795001 RAL-440 1969 chr3R 27840238 27840269 chr3R 27840376 27840396 5 124 0.0 1.5 0.8 2.8 158 chr3R 27840238 intron CG34353 - chr3R 27840317 intron CG34353 - chr3R 27840396 intron CG34353 - chr3R_5_27840001 chr3R_27840001 RAL-440 1970 chr3R 27856738 27856790 chr3R 27858241 27858283 hopper2 14 1495 6.0 2.0 4.0 2.8 1545 chr3R 27856738 intron CG34353 - chr3R 27857510 intron CG34353 - chr3R 27858283 intron CG34353 - chr3R_14_27855001 chr3R_27855001 RAL-440 1971 chr3R 27875700 27875731 chr3R 27882760 27882761 297 13 7061 1.5 8.0 4.8 2.2 7061 chr3R 27875700 intron CG34353 - chr3R 27879230 intron CG34353 - chr3R 27882761 intron CG34353 - chr3R_13_27875001 chr3R_27875001 RAL-440 1972 chr3R 27911237 27911256 chr3R 27911335 27911348 4 96 9.0 9.5 9.2 0.4 111 chr3R 27911237 intergenic not near genes chr3R 27911292 intergenic not near genes chr3R 27911348 intergenic not near genes chr3R_4_27910001 chr3R_27910001 RAL-440 1973 chr3R 28016636 28016668 chr3R 28016737 28016763 4 103 16.0 8.0 12.0 0.3 127 chr3R 28016636 intergenic not near genes chr3R 28016700 intergenic not near genes chr3R 28016763 intergenic not near genes chr3R_4_28015001 chr3R_28015001 RAL-440 1974 chr3R 28035473 28035508 chr3R 28035570 28035591 5 86 2.0 2.5 2.2 1.6 118 chr3R 28035473 intron CG34362 + chr3R 28035532 intron CG34362 + chr3R 28035591 intron CG34362 + chr3R_5_28035001 chr3R_28035001 RAL-440 1975 chr3R 28054443 28054469 chr3R 28054523 28054564 6 84 13.5 13.5 13.5 0.4 121 chr3R 28054443 intron CG34362 + chr3R 28054504 intron CG34362 + chr3R 28054564 intron CG34362 + chr3R_6_28050001 chr3R_28050001 RAL-440 1976 chr3R 28068477 28068517 chr3R 28073939 28073944 I-element 5 5449 0.5 2.0 1.2 2.3 5467 chr3R 28068477 intron CG34362 + chr3R 28071210 intron CG34362 + chr3R 28073944 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-440 1977 chr3R 28115497 28115545 chr3R 28115590 28115597 4 72 11.5 10.5 11.0 0.3 100 chr3R 28115497 intergenic not near genes chr3R 28115547 intergenic not near genes chr3R 28115597 intergenic not near genes chr3R_4_28115001 chr3R_28115001 RAL-440 1978 chr3R 28223738 28223773 chr3R 28223845 28223868 6 99 7.0 7.5 7.2 0.7 130 chr3R 28223738 intron CG34354 + chr3R 28223803 intron CG34354 + chr3R 28223868 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-440 1979 chr3R 28253348 28253366 chr3R 28255861 28255888 jockey 6 2518 1.5 5.5 3.5 1.3 2540 chr3R 28253348 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255888 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-440 1980 chr3R 28302102 28302128 chr3R 28302544 28302569 jockey 5 442 3.0 3.5 3.2 1.2 467 chr3R 28302102 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-440 1981 chr3R 28312258 28312290 chr3R 28312536 28312545 4 271 11.0 14.0 12.5 0.3 287 chr3R 28312258 intergenic not near genes chr3R 28312402 intergenic not near genes chr3R 28312545 intergenic not near genes chr3R_4_28310001 chr3R_28310001 RAL-440 1982 chr3R 28368982 28369010 chr3R 28369083 28369114 6 100 7.0 9.0 8.0 0.7 132 chr3R 28368982 intergenic not near genes chr3R 28369048 intergenic not near genes chr3R 28369114 intergenic not near genes chr3R_6_28365001 chr3R_28365001 RAL-440 1983 chr3R 28376084 28376131 chr3R 28376628 28376645 5 532 6.5 13.5 10.0 0.5 561 chr3R 28376084 intergenic not near genes chr3R 28376364 intergenic not near genes chr3R 28376645 intergenic not near genes chr3R_5_28375001 chr3R_28375001 RAL-440 1984 chr3R 28393696 28393731 chr3R 28393799 28393843 6 112 11.0 8.5 9.8 0.6 147 chr3R 28393696 intergenic not near genes chr3R 28393770 intergenic not near genes chr3R 28393843 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-440 1985 chr3R 28395572 28395594 chr3R 28395668 28395706 9 104 9.0 13.0 11.0 0.8 134 chr3R 28395572 intergenic not near genes chr3R 28395639 intergenic not near genes chr3R 28395706 intergenic not near genes chr3R_9_28395001 chr3R_28395001 RAL-440 1986 chr3R 28421667 28421687 chr3R 28421744 28421780 6 88 6.5 5.0 5.8 0.9 113 chr3R 28421667 intron beat-VI + chr3R 28421724 intron beat-VI + chr3R 28421780 intron beat-VI + chr3R_6_28420001 chr3R_28420001 RAL-440 1987 chr3R 28466170 28466197 chr3R 28466492 28466507 5 311 8.0 12.5 10.2 0.4 337 chr3R 28466170 intron beat-VI + chr3R 28466338 intron beat-VI + chr3R 28466507 intron beat-VI + chr3R_5_28465001 chr3R_28465001 RAL-440 1988 chr3R 28469696 28469714 chr3R 28470085 28470092 5 389 11.5 10.5 11.0 0.4 396 chr3R 28469696 intron beat-VI + chr3R 28469894 intron beat-VI + chr3R 28470092 intron beat-VI + chr3R_5_28465001 chr3R_28465001 RAL-440 1989 chr3R 28478507 28478523 chr3R 28478585 28478605 4 85 10.0 12.5 11.2 0.3 98 chr3R 28478507 intergenic not near genes chr3R 28478556 intergenic not near genes chr3R 28478605 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-440 1990 chr3R 28479134 28479168 chr3R 28479243 28479281 7 112 8.5 6.0 7.2 0.9 147 chr3R 28479134 intergenic not near genes chr3R 28479208 intergenic not near genes chr3R 28479281 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-440 1991 chr3R 28554684 28554722 chr3R 28554789 28554797 4 98 7.0 4.5 5.8 0.6 113 chr3R 28554684 intergenic not near genes chr3R 28554740 intergenic not near genes chr3R 28554797 intergenic not near genes chr3R_4_28550001 chr3R_28550001 RAL-440 1992 chr3R 28591271 28591309 chr3R 28591384 28591422 15 111 4.0 3.0 3.5 3.3 151 chr3R 28591271 5` UTR MRE23 + chr3R 28591346 5` UTR MRE23 + chr3R 28591422 intergenic MRE23 + chr3R_15_28590001 chr3R_28590001 RAL-440 1993 chr3R 28597483 28597514 chr3R 28597572 28597590 4 90 9.5 8.5 9.0 0.4 107 chr3R 28597483 intergenic not near genes chr3R 28597536 intergenic not near genes chr3R 28597590 intergenic Noa36 - chr3R_4_28595001 chr3R_28595001 RAL-440 1994 chr3R 28633186 28633223 chr3R 28633280 28633323 11 92 10.5 6.0 8.2 1.2 137 chr3R 28633186 intron CG10011 - chr3R 28633254 intron CG10011 - chr3R 28633323 intron CG10011 - chr3R_11_28630001 chr3R_28630001 RAL-440 1995 chr3R 28643422 28643436 chr3R 28643582 28643593 4 166 10.5 19.0 14.8 0.3 171 chr3R 28643422 intergenic not near genes chr3R 28643508 intergenic not near genes chr3R 28643593 intergenic not near genes chr3R_4_28640001 chr3R_28640001 RAL-440 1996 chr3R 28687950 28687970 chr3R 28688046 28688076 7 103 63.5 56.0 59.8 0.1 126 chr3R 28687950 intron CG9990 + chr3R 28688013 intron CG9990 + chr3R 28688076 intron CG9990 + chr3R_7_28685001 chr3R_28685001 RAL-440 1997 chr3R 28696466 28696482 chr3R 28696565 28696567 4 94 12.0 8.5 10.2 0.4 101 chr3R 28696466 intron htt + chr3R 28696516 intron htt + chr3R 28696567 intron htt + chr3R_4_28695001 chr3R_28695001 RAL-440 1998 chr3R 28742477 28742514 chr3R 28742561 28742609 10 92 1.5 3.0 2.2 3.1 132 chr3R 28742477 intron AstA-R2 - chr3R 28742543 intron AstA-R2 - chr3R 28742609 intron AstA-R2 - chr3R_10_28740001 chr3R_28740001 RAL-440 1999 chr3R 28758279 28758287 chr3R 28763900 28763915 roo 7 5631 9.5 0.0 4.8 1.2 5636 chr3R 28758279 intergenic aqrs - chr3R 28761097 intergenic not near genes chr3R 28763915 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-440 2000 chr3R 28811565 28811584 chr3R 28811717 28811745 4 157 2.0 0.5 1.2 1.8 180 chr3R 28811565 intergenic wdn - chr3R 28811655 intergenic wdn -,CG1646 + chr3R 28811745 intergenic CG1646 +,wdn - chr3R_4_28810001 chr3R_28810001 RAL-440 2001 chr3R 21907534 21907536 chr3R 28831801 28831802 43 6924267 23.0 21.0 22.0 1.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-440 2002 chr3R 28870601 28870648 chr3R 28870704 28870751 8 99 8.0 8.0 8.0 0.9 150 chr3R 28870601 intergenic CG33203 -,spg + chr3R 28870676 3` UTR CG33203 - chr3R 28870751 3` UTR CG33203 - chr3R_8_28870001 chr3R_28870001 RAL-440 2003 chr3R 28882922 28882942 chr3R 28883054 28883069 4 132 9.0 6.0 7.5 0.5 147 chr3R 28882922 intron,3` UTR CG33203 -,CG14527 + chr3R 28882996 intron CG33203 - chr3R 28883069 intron CG33203 - chr3R_4_28880001 chr3R_28880001 RAL-440 2004 chr3R 28897319 28897344 chr3R 28897433 28897462 4 110 12.5 10.0 11.2 0.3 143 chr3R 28897319 intron Doa + chr3R 28897390 intron Doa + chr3R 28897462 intron Doa + chr3R_4_28895001 chr3R_28895001 RAL-440 2005 chr3R 28913456 28913480 chr3R 28913523 28913576 6 81 12.0 14.5 13.2 0.4 120 chr3R 28913456 intron Doa + chr3R 28913516 intron Doa + chr3R 28913576 intron Doa + chr3R_6_28910001 chr3R_28910001 RAL-440 2006 chr3R 28998978 28998992 chr3R 28999079 28999099 4 104 12.5 8.5 10.5 0.3 121 chr3R 28998978 intron wat - chr3R 28999038 intron wat - chr3R 28999099 intron wat - chr3R_4_28995001 chr3R_28995001 RAL-440 2007 chr3R 29009956 29009980 chr3R 29010064 29010106 6 118 12.0 7.5 9.8 0.6 150 chr3R 29009956 intron wat - chr3R 29010031 intron wat - chr3R 29010106 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-440 2008 chr3R 29032751 29032774 chr3R 29032832 29032852 6 84 5.5 2.5 4.0 1.2 101 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032802 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032852 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_6_29030001 chr3R_29030001 RAL-440 2009 chr3R 29053722 29053769 chr3R 29054249 29054299 9 522 9.5 6.0 7.8 1.0 577 chr3R 29053722 exon CG11842 + chr3R 29054010 intergenic CG11842 +,CG11843 + chr3R 29054299 intergenic CG11843 +,CG11842 + chr3R_9_29050001 chr3R_29050001 RAL-440 2010 chr3R 29207511 29207547 chr3R 29207719 29207757 4 208 7.5 9.0 8.2 0.4 246 chr3R 29207511 intergenic not near genes chr3R 29207634 intergenic not near genes chr3R 29207757 intergenic not near genes chr3R_4_29205001 chr3R_29205001 RAL-440 2011 chr3R 29213044 29213090 chr3R 29213147 29213185 16 96 13.0 16.0 14.5 1.0 141 chr3R 29213044 intergenic not near genes chr3R 29213114 intergenic not near genes chr3R 29213185 intergenic not near genes chr3R_16_29210001 chr3R_29210001 RAL-440 2012 chr3R 29256282 29256299 chr3R 29256368 29256376 5 88 11.5 16.0 13.8 0.3 94 chr3R 29256282 intergenic CG45544 +,stg - chr3R 29256329 intergenic CG45544 + chr3R 29256376 intergenic CG45544 + chr3R_5_29255001 chr3R_29255001 RAL-440 2013 chr3R 29319817 29319854 chr3R 29320149 29320189 jockey 6 329 2.0 2.0 2.0 2.0 372 chr3R 29319817 intergenic Cnx99A - chr3R 29320003 intergenic Cnx99A - chr3R 29320189 intergenic not near genes chr3R_6_29320001 chr3R_29320001 RAL-440 2014 chr3R 29333879 29333902 chr3R 29334006 29334036 4 130 4.5 7.5 6.0 0.6 157 chr3R 29333879 intergenic not near genes chr3R 29333958 intergenic not near genes chr3R 29334036 intergenic not near genes chr3R_4_29330001 chr3R_29330001 RAL-440 2015 chr3R 29334214 29334238 chr3R 29334313 29334328 5 91 6.0 6.5 6.2 0.7 114 chr3R 29334214 intergenic not near genes chr3R 29334271 intergenic not near genes chr3R 29334328 intergenic not near genes chr3R_5_29330001 chr3R_29330001 RAL-440 2016 chr3R 29365380 29365409 chr3R 29365480 29365498 4 98 1.5 7.0 4.2 0.8 118 chr3R 29365380 intergenic not near genes chr3R 29365439 intergenic not near genes chr3R 29365498 intergenic not near genes chr3R_4_29365001 chr3R_29365001 RAL-440 2017 chr3R 29406628 29406645 chr3R 29407911 29407934 jockey 4 1288 2.5 7.5 5.0 0.7 1306 chr3R 29406628 intron Ptp99A + chr3R 29407281 intron Ptp99A + chr3R 29407934 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-440 2018 chr3R 29472007 29472035 chr3R 29472112 29472129 5 103 3.0 4.0 3.5 1.1 122 chr3R 29472007 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-440 2019 chr3R 29474412 29474425 chr3R 29474519 29474532 5 106 6.5 5.5 6.0 0.7 120 chr3R 29474412 intron Ptp99A + chr3R 29474472 intron Ptp99A + chr3R 29474532 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-440 2020 chr3R 29526222 29526260 chr3R 29526321 29526367 5 96 9.0 13.5 11.2 0.4 145 chr3R 29526222 intergenic not near genes chr3R 29526294 intergenic not near genes chr3R 29526367 intergenic not near genes chr3R_5_29525001 chr3R_29525001 RAL-440 2021 chr3R 29606940 29606966 chr3R 29607014 29607026 5 76 10.0 8.5 9.2 0.5 86 chr3R 29606940 intron alph + chr3R 29606983 intron alph + chr3R 29607026 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-440 2022 chr3R 29655651 29655674 chr3R 29655736 29655770 5 88 14.5 10.5 12.5 0.4 119 chr3R 29655651 intron Dop1R2 - chr3R 29655710 intron Dop1R2 - chr3R 29655770 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-440 2023 chr3R 29718135 29718162 chr3R 29718228 29718244 6 88 9.0 8.0 8.5 0.6 109 chr3R 29718135 intergenic not near genes chr3R 29718190 intergenic CG15506 + chr3R 29718244 intergenic CG15506 + chr3R_6_29715001 chr3R_29715001 RAL-440 2024 chr3R 29738245 29738296 chr3R 29739732 29739769 hobo 10 1482 2.0 1.5 1.8 3.6 1524 chr3R 29738245 intergenic CG1969 +,CG7598 + chr3R 29739007 intron CG1969 + chr3R 29739769 5` UTR CG1969 + chr3R_10_29735001 chr3R_29735001 RAL-440 2025 chr3R 29760354 29760383 chr3R 29761568 29761600 pogo 6 1218 4.5 3.5 4.0 1.2 1246 chr3R 29760354 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761600 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-440 2026 chr3R 29773865 29773895 chr3R 29773972 29773999 6 101 2.5 4.5 3.5 1.3 134 chr3R 29773865 intron kay + chr3R 29773932 intron kay + chr3R 29773999 intron kay + chr3R_6_29770001 chr3R_29770001 RAL-440 2027 chr3R 29854847 29854859 chr3R 29854911 29854939 5 79 3.5 5.0 4.2 1.0 92 chr3R 29854847 3` UTR dgt1 - chr3R 29854893 exon dgt1 - chr3R 29854939 exon dgt1 - chr3R_5_29850001 chr3R_29850001 RAL-440 2028 chr3R 29882007 29882023 chr3R 29891183 29891200 roo 4 9176 6.0 4.5 5.2 0.6 9193 chr3R 29882007 intron CG31038 + chr3R 29886604 intron CG31038 + chr3R 29891200 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-440 2029 chr3R 29882025 29882051 chr3R 29891182 29891212 roo 12 9169 3.0 4.5 3.8 2.5 9187 chr3R 29882025 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891212 intron CG31038 + chr3R_12_29885001 chr3R_29885001 RAL-440 2030 chr3R 29949582 29949611 chr3R 29949666 29949695 4 89 11.5 9.5 10.5 0.3 113 chr3R 29949582 intergenic not near genes chr3R 29949638 intergenic not near genes chr3R 29949695 intergenic not near genes chr3R_4_29945001 chr3R_29945001 RAL-440 2031 chr3R 29963482 29963510 chr3R 29963593 29963628 9 112 9.0 10.5 9.8 0.8 146 chr3R 29963482 intron TkR99D - chr3R 29963555 intron TkR99D - chr3R 29963628 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-440 2032 chr3R 29979722 29979736 chr3R 29979861 29979868 4 140 9.5 6.0 7.8 0.5 146 chr3R 29979722 intergenic not near genes chr3R 29979795 intergenic not near genes chr3R 29979868 intergenic not near genes chr3R_4_29975001 chr3R_29975001 RAL-440 2033 chr3R 30070139 30070165 chr3R 30070420 30070438 4 287 12.5 10.5 11.5 0.3 299 chr3R 30070139 intron sima + chr3R 30070288 intron sima + chr3R 30070438 intron sima + chr3R_4_30070001 chr3R_30070001 RAL-440 2034 chr3R 30077901 30077926 chr3R 30077992 30078033 11 100 6.0 8.5 7.2 1.3 132 chr3R 30077901 intron sima + chr3R 30077967 intron sima + chr3R 30078033 intron sima + chr3R_11_30075001 chr3R_30075001 RAL-440 2035 chr3R 30260362 30260393 chr3R 30260449 30260488 12 89 1.5 2.0 1.8 4.3 126 chr3R 30260362 intergenic not near genes chr3R 30260425 intergenic not near genes chr3R 30260488 intergenic not near genes chr3R_12_30260001 chr3R_30260001 RAL-440 2036 chr3R 30264453 30264503 chr3R 30264659 30264674 6 187 14.5 7.5 11.0 0.5 221 chr3R 30264453 intergenic not near genes chr3R 30264564 intergenic not near genes chr3R 30264674 intergenic not near genes chr3R_6_30260001 chr3R_30260001 RAL-440 2037 chr3R 30268849 30268856 chr3R 30268932 30268949 4 87 8.5 11.5 10.0 0.4 100 chr3R 30268849 intergenic not near genes chr3R 30268899 intergenic not near genes chr3R 30268949 intergenic not near genes chr3R_4_30265001 chr3R_30265001 RAL-440 2038 chr3R 30269643 30269670 chr3R 30269727 30269759 4 88 1.5 4.0 2.8 1.1 116 chr3R 30269643 intergenic not near genes chr3R 30269701 intergenic not near genes chr3R 30269759 intergenic not near genes chr3R_4_30265001 chr3R_30265001 RAL-440 2039 chr3R 30317326 30317349 chr3R 30324920 30324955 roo 5 7603 1.0 6.0 3.5 1.1 7629 chr3R 30317326 intron hdc + chr3R 30321140 intron hdc + chr3R 30324955 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-440 2040 chr3R 30352529 30352556 chr3R 30352658 30352685 5 139 4.5 3.5 4.0 1.0 156 chr3R 30352529 intron hdc + chr3R 30352607 intron hdc + chr3R 30352685 intron hdc + chr3R_5_30350001 chr3R_30350001 RAL-440 2041 chr3R 30375528 30375568 chr3R 30383169 30383201 412 6 7633 1.5 1.0 1.2 2.7 7673 chr3R 30375528 intergenic not near genes chr3R 30379364 intergenic not near genes chr3R 30383201 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-440 2042 chr3R 30396196 30396240 chr3R 30404482 30404516 roo 6 8272 6.0 4.5 5.2 1.0 8320 chr3R 30396196 intergenic not near genes chr3R 30400356 intergenic not near genes chr3R 30404516 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-440 2043 chr3R 30413050 30413091 chr3R 30413137 30413181 6 86 14.0 10.5 12.2 0.5 131 chr3R 30413050 intergenic not near genes chr3R 30413116 intergenic not near genes chr3R 30413181 intergenic not near genes chr3R_6_30410001 chr3R_30410001 RAL-440 2044 chr3R 30445492 30445533 chr3R 30445604 30445639 5 102 11.5 9.5 10.5 0.4 147 chr3R 30445492 intergenic aralar1 -,Osi23 - chr3R 30445566 intergenic aralar1 - chr3R 30445639 3` UTR aralar1 - chr3R_5_30445001 chr3R_30445001 RAL-440 2045 chr3R 30456382 30456424 chr3R 30456476 30456517 8 90 10.0 13.5 11.8 0.6 135 chr3R 30456382 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456517 3` UTR CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-440 2046 chr3R 30457999 30458039 chr3R 30458097 30458136 7 93 14.0 17.0 15.5 0.4 137 chr3R 30457999 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458136 intron CG2224 - chr3R_7_30455001 chr3R_30455001 RAL-440 2047 chr3R 30461485 30461521 chr3R 30461613 30461629 11 124 3.0 6.0 4.5 2.0 144 chr3R 30461485 intron CDase + chr3R 30461557 intron CDase + chr3R 30461629 intron CDase + chr3R_11_30460001 chr3R_30460001 RAL-440 2048 chr3R 30485057 30485066 chr3R 30485139 30485162 4 90 9.0 10.0 9.5 0.4 105 chr3R 30485057 intron PH4alphaEFB + chr3R 30485110 intron PH4alphaEFB + chr3R 30485162 intron PH4alphaEFB + chr3R_4_30485001 chr3R_30485001 RAL-440 2049 chr3R 30548825 30548831 chr3R 30549109 30549136 6 301 10.0 10.5 10.2 0.5 311 chr3R 30548825 intron tmod + chr3R 30548980 intron tmod + chr3R 30549136 intron tmod + chr3R_6_30545001 chr3R_30545001 RAL-440 2050 chr3R 30571683 30571715 chr3R 30571783 30571792 5 92 7.5 6.0 6.8 0.6 109 chr3R 30571683 intron tmod + chr3R 30571738 intron tmod + chr3R 30571792 intron tmod + chr3R_5_30570001 chr3R_30570001 RAL-440 2051 chr3R 30627599 30627638 chr3R 30627683 30627708 8 78 6.0 6.0 6.0 1.1 109 chr3R 30627599 3` UTR CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627708 exon CG2267 - chr3R_8_30625001 chr3R_30625001 RAL-440 2052 chr3R 30679514 30679551 chr3R 30686992 30687025 blood 9 7476 4.0 6.0 5.0 1.5 7511 chr3R 30679514 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687025 intergenic not near genes chr3R_9_30680001 chr3R_30680001 RAL-440 2053 chr3R 30690166 30690192 chr3R 30690248 30690281 5 88 8.0 5.5 6.8 0.6 115 chr3R 30690166 intergenic Spn100A + chr3R 30690224 intergenic Spn100A + chr3R 30690281 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-440 2054 chr3R 30753349 30753365 chr3R 30753444 30753470 5 99 9.0 13.5 11.2 0.4 121 chr3R 30753349 intergenic not near genes chr3R 30753410 intergenic not near genes chr3R 30753470 intergenic not near genes chr3R_5_30750001 chr3R_30750001 RAL-440 2055 chr3R 30812729 30812756 chr3R 30812821 30812850 5 101 6.0 8.5 7.2 0.6 121 chr3R 30812729 intron cindr + chr3R 30812790 intron cindr + chr3R 30812850 intron cindr + chr3R_5_30810001 chr3R_30810001 RAL-440 2056 chr3R 30818803 30818843 chr3R 30820379 30820402 1360 5 1573 7.5 3.0 5.2 0.8 1599 chr3R 30818803 intron cindr + chr3R 30819602 intron cindr + chr3R 30820402 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-440 2057 chr3R 30859392 30859420 chr3R 30859484 30859518 6 92 4.5 5.0 4.8 1.0 126 chr3R 30859392 intergenic not near genes chr3R 30859455 intergenic not near genes chr3R 30859518 intergenic not near genes chr3R_6_30855001 chr3R_30855001 RAL-440 2058 chr3R 30896167 30896199 chr3R 30896258 30896300 7 100 6.5 2.0 4.2 1.3 133 chr3R 30896167 intron Cyp4c3 + chr3R 30896234 intron Cyp4c3 + chr3R 30896300 intron Cyp4c3 + chr3R_7_30895001 chr3R_30895001 RAL-440 2059 chr3R 30948077 30948102 chr3R 30948270 30948311 4 202 4.5 9.0 6.8 0.5 234 chr3R 30948077 intergenic not near genes chr3R 30948194 intergenic not near genes chr3R 30948311 intergenic not near genes chr3R_4_30945001 chr3R_30945001 RAL-440 2060 chr3R 30973116 30973160 chr3R 30973297 30973332 4 176 7.5 10.5 9.0 0.4 216 chr3R 30973116 intron 5-HT7 - chr3R 30973224 intron 5-HT7 - chr3R 30973332 intron 5-HT7 - chr3R_4_30970001 chr3R_30970001 RAL-440 2061 chr3R 30994119 30994149 chr3R 30994248 30994257 4 123 10.0 7.0 8.5 0.4 138 chr3R 30994119 intron 5-HT7 - chr3R 30994188 intron 5-HT7 - chr3R 30994257 intron 5-HT7 - chr3R_4_30990001 chr3R_30990001 RAL-440 2062 chr3R 31047205 31047243 chr3R 31047508 31047557 4 311 12.0 5.5 8.8 0.4 352 chr3R 31047205 intergenic CanA1 + chr3R 31047381 intergenic not near genes chr3R 31047557 intergenic not near genes chr3R_4_31045001 chr3R_31045001 RAL-440 2063 chr3R 31074235 31074261 chr3R 31081832 31081864 springer 6 7603 3.5 2.5 3.0 1.5 7629 chr3R 31074235 intron Sox100B + chr3R 31078050 intron Sox100B + chr3R 31081864 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-440 2064 chr3R 31137143 31137186 chr3R 31137237 31137277 9 90 9.0 8.5 8.8 0.9 134 chr3R 31137143 intron Gycbeta100B + chr3R 31137210 intron Gycbeta100B + chr3R 31137277 intron Gycbeta100B + chr3R_9_31135001 chr3R_31135001 RAL-440 2065 chr3R 31146750 31146784 chr3R 31146834 31146846 6 80 17.0 18.5 17.8 0.3 96 chr3R 31146750 intron Gycbeta100B + chr3R 31146798 intron Gycbeta100B + chr3R 31146846 intron Gycbeta100B + chr3R_6_31145001 chr3R_31145001 RAL-440 2066 chr3R 31251530 31251563 chr3R 31251627 31251669 5 96 8.5 4.0 6.2 0.7 139 chr3R 31251530 intron qless - chr3R 31251600 intron qless - chr3R 31251669 intron qless - chr3R_5_31250001 chr3R_31250001 RAL-440 2067 chr3R 31279388 31279403 chr3R 31285564 31285580 diver 6 6186 2.0 1.5 1.8 2.1 6192 chr3R 31279388 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285580 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-440 2068 chr3R 31413087 31413119 chr3R 31418288 31418322 copia 7 5201 2.0 0.5 1.2 3.2 5235 chr3R 31413087 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-440 2069 chr3R 31426865 31426887 chr3R 31426974 31426998 5 110 7.5 4.5 6.0 0.7 133 chr3R 31426865 intron Gprk2 + chr3R 31426932 intron Gprk2 + chr3R 31426998 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-440 2070 chr3R 31426894 31426912 chr3R 31426971 31427011 8 97 2.5 4.5 3.5 1.8 117 chr3R 31426894 intron Gprk2 + chr3R 31426952 intron Gprk2 + chr3R 31427011 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-440 2071 chr3R 31435350 31435388 chr3R 31435517 31435553 7 165 11.5 8.5 10.0 0.6 203 chr3R 31435350 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435553 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-440 2072 chr3R 31442273 31442295 chr3R 31442360 31442374 4 83 12.5 11.5 12.0 0.3 101 chr3R 31442273 intron Gprk2 + chr3R 31442324 intron Gprk2 + chr3R 31442374 intron Gprk2 + chr3R_4_31440001 chr3R_31440001 RAL-440 2073 chr3R 31446073 31446101 chr3R 31446176 31446186 4 100 1.0 1.5 1.2 1.8 113 chr3R 31446073 intron Gprk2 + chr3R 31446130 intron Gprk2 + chr3R 31446186 intron Gprk2 + chr3R_4_31445001 chr3R_31445001 RAL-440 2074 chr3R 31530838 31530847 chr3R 31531145 31531150 6 312 3.5 2.0 2.8 1.6 312 chr3R 31530838 intergenic not near genes chr3R 31530994 intergenic not near genes chr3R 31531150 intergenic not near genes chr3R_6_31530001 chr3R_31530001 RAL-440 2075 chr3R 31538483 31538506 chr3R 31538568 31538604 4 92 9.0 10.0 9.5 0.4 121 chr3R 31538483 intergenic not near genes chr3R 31538544 intergenic not near genes chr3R 31538604 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-440 2076 chr3R 31539337 31539352 chr3R 31539427 31539448 4 93 13.0 12.0 12.5 0.3 111 chr3R 31539337 intergenic not near genes chr3R 31539392 intergenic not near genes chr3R 31539448 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-440 2077 chr3R 31539849 31539883 chr3R 31539947 31539973 7 92 11.5 11.0 11.2 0.6 124 chr3R 31539849 intergenic not near genes chr3R 31539911 intergenic not near genes chr3R 31539973 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-440 2078 chr3R 31610122 31610147 chr3R 31610224 31610237 4 100 7.0 10.0 8.5 0.4 115 chr3R 31610122 intron CycG - chr3R 31610180 intron CycG - chr3R 31610237 intron CycG - chr3R_4_31610001 chr3R_31610001 RAL-440 2079 chr3R 31691519 31691559 chr3R 31696296 31696330 Doc 15 4773 5.0 6.5 5.8 2.2 4811 chr3R 31691519 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696330 intergenic not near genes chr3R_15_31690001 chr3R_31690001 RAL-440 2080 chr3R 31774850 31774890 chr3R 31775015 31775026 6 150 13.5 10.0 11.8 0.5 176 chr3R 31774850 3` UTR sip3 + chr3R 31774938 3` UTR sip3 + chr3R 31775026 3` UTR sip3 + chr3R_6_31770001 chr3R_31770001 RAL-440 2081 chr3R 31808597 31808801 chr3R 31808692 31808928 11 107 11.0 12.5 11.8 0.9 331 chr3R 31808597 intron CG11576 - chr3R 31808762 intron CG11576 - chr3R 31808928 intron CG11576 - chr3R_11_31805001 chr3R_31805001 RAL-440 2082 chr3R 31831524 31831562 chr3R 31831615 31831652 6 84 11.0 12.5 11.8 0.5 128 chr3R 31831524 intron RhoGAP100F + chr3R 31831588 intron RhoGAP100F + chr3R 31831652 intron RhoGAP100F + chr3R_6_31830001 chr3R_31830001 RAL-440 2083 chr3R 31887555 31887605 chr3R 31887656 31887698 11 94 12.5 11.5 12.0 0.8 143 chr3R 31887555 intron heph - chr3R 31887626 intron heph - chr3R 31887698 intron heph - chr3R_11_31885001 chr3R_31885001 RAL-440 2084 chr3R 31911662 31911710 chr3R 31911764 31911793 7 94 6.5 9.5 8.0 0.8 131 chr3R 31911662 intron heph - chr3R 31911728 intron heph - chr3R 31911793 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-440 2085 chr3R 31930899 31931194 chr3R 31931025 31931279 4 104 4.0 5.5 4.8 0.7 380 chr3R 31930899 intron heph - chr3R 31931089 intron heph - chr3R 31931279 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-440 2086 chr3R 31947400 31947420 chr3R 31947938 31947960 5 536 18.5 18.0 18.2 0.3 560 chr3R 31947400 intron heph - chr3R 31947680 intron heph - chr3R 31947960 intron heph - chr3R_5_31945001 chr3R_31945001 RAL-440 2087 chr3R 31997984 31997994 chr3R 32005468 32005484 blood 4 7488 6.0 7.0 6.5 0.5 7500 chr3R 31997984 intron heph - chr3R 32001734 intron heph - chr3R 32005484 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-440 2088 chr3R 31997996 31998021 chr3R 32005464 32005508 blood 8 7476 2.0 6.0 4.0 1.6 7512 chr3R 31997996 intron heph - chr3R 32001752 intron heph - chr3R 32005508 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-440 2089 chr3R 32009966 32010010 chr3R 32010110 32010136 9 135 9.5 6.5 8.0 1.0 170 chr3R 32009966 intron heph - chr3R 32010051 intron heph - chr3R 32010136 intron heph - chr3R_9_32010001 chr3R_32010001 RAL-440 2090 chr3R 32016707 32016738 chr3R 32016788 32016828 4 90 4.5 8.0 6.2 0.6 121 chr3R 32016707 5` UTR CR45557 + chr3R 32016768 5` UTR CR45557 + chr3R 32016828 5` UTR CR45557 + chr3R_4_32015001 chr3R_32015001 RAL-440 2091 chr3R 32034282 32034288 chr3R 32034344 32034375 4 84 14.5 10.0 12.2 0.3 93 chr3R 32034282 intergenic not near genes chr3R 32034328 intergenic not near genes chr3R 32034375 intergenic not near genes chr3R_4_32030001 chr3R_32030001 RAL-440 2092 chr4 76481 76515 chr4 81941 81958 I-element 6 5450 4.5 2.5 3.5 1.3 5477 chr4 76481 intron pan + chr4 79220 intron pan + chr4 81958 intron pan + chr4_6_75001 chr4_75001 RAL-440 2093 chr4 257388 257405 chr4 257578 257594 4 188 9.5 2.5 6.0 0.6 206 chr4 257388 exon RhoGAP102A + chr4 257491 intron RhoGAP102A + chr4 257594 intron RhoGAP102A + chr4_4_255001 chr4_255001 RAL-440 2094 chr4 257406 257430 chr4 257572 257605 4 176 2.5 2.5 2.5 1.1 199 chr4 257406 intron RhoGAP102A + chr4 257506 intron RhoGAP102A + chr4 257605 intron RhoGAP102A + chr4_4_255001 chr4_255001 RAL-440 2095 chr4 280787 280834 chr4 281437 281465 6 642 1.5 4.5 3.0 1.5 678 chr4 280787 intron Syt7 - chr4 281126 intron Syt7 - chr4 281465 intron Syt7 - chr4_6_280001 chr4_280001 RAL-440 2096 chr4 293863 293900 chr4 294120 294165 9 254 1.5 3.0 2.2 2.8 302 chr4 293863 intron Syt7 - chr4 294014 intron Syt7 - chr4 294165 intron Syt7 - chr4_9_290001 chr4_290001 RAL-440 2097 chr4 418214 418264 chr4 418328 418352 18 106 4.5 4.0 4.2 3.5 138 chr4 418214 intergenic not near genes chr4 418283 intergenic not near genes chr4 418352 intergenic not near genes chr4_18_415001 chr4_415001 RAL-440 2098 chr4 654356 654391 chr4 654449 654492 8 99 6.0 4.5 5.2 1.3 136 chr4 654356 intron gw - chr4 654424 intron gw - chr4 654492 intron gw - chr4_8_650001 chr4_650001 RAL-440 2099 chr4 671601 671634 chr4 680186 680222 Tirant 14 8594 3.5 7.0 5.2 2.3 8621 chr4 671601 intron CG11360 + chr4 675912 intron CG11360 + chr4 680222 intron CG11360 + chr4_14_675001 chr4_675001 RAL-440 2100 chr4 896767 896818 chr4 896864 896913 6 94 5.0 3.5 4.2 1.2 146 chr4 896767 intron unc-13 - chr4 896840 intron unc-13 - chr4 896913 intron unc-13 - chr4_6_895001 chr4_895001 RAL-440 2101 chr4 905550 905590 chr4 905652 905691 14 94 5.0 4.5 4.8 2.4 141 chr4 905550 5` UTR unc-13 - chr4 905620 5` UTR unc-13 - chr4 905691 5` UTR unc-13 - chr4_14_905001 chr4_905001 RAL-440 2102 chr4 1231231 1231245 chr4 1231368 1231376 5 140 5.0 3.0 4.0 1.0 145 chr4 1231231 intron Caps + chr4 1231304 intron Caps + chr4 1231376 intron Caps + chr4_5_1230001 chr4_1230001 RAL-440 2103 chr4 1250557 1250569 chr4 1250648 1250671 4 98 3.5 2.0 2.8 1.1 114 chr4 1250557 intron Caps + chr4 1250614 intron Caps + chr4 1250671 intron Caps + chr4_4_1250001 chr4_1250001 RAL-440 2104 chrX 178891 178898 chrX 178980 178986 4 92 7.0 1.5 4.2 0.8 95 chrX 178891 intron tyn + chrX 178938 intron tyn + chrX 178986 intron tyn + chrX_4_175001 chrX_175001 RAL-440 2105 chrX 178899 178918 chrX 178973 178997 7 84 5.0 1.0 3.0 1.8 98 chrX 178899 intron tyn + chrX 178948 intron tyn + chrX 178997 intron tyn + chrX_7_175001 chrX_175001 RAL-440 2106 chrX 201036 201069 chrX 201116 201149 13 86 2.0 3.5 2.8 3.4 113 chrX 201036 intergenic not near genes chrX 201092 intergenic not near genes chrX 201149 intergenic not near genes chrX_13_200001 chrX_200001 RAL-440 2107 chrX 318451 318498 chrX 323557 323600 flea 11 5099 3.5 3.0 3.2 2.6 5149 chrX 318451 intron,intron CG3777 +,CG32816 - chrX 321026 intron,intron CG3777 +,CG32816 - chrX 323600 intron,intron CG3777 +,CG32816 - chrX_11_320001 chrX_320001 RAL-440 2108 chrX 367031 367063 chrX 367148 367173 7 110 1.0 4.0 2.5 2.0 142 chrX 367031 intron,5` UTR CG32816 -,yar + chrX 367102 intron CG32816 - chrX 367173 intron CG32816 - chrX_7_365001 chrX_365001 RAL-440 2109 chrX 428401 428452 chrX 434605 434652 3S18 15 6195 3.5 5.0 4.2 2.9 6251 chrX 428401 intron CG32816 - chrX 431526 intron CG32816 - chrX 434652 intron CG32816 - chrX_15_430001 chrX_430001 RAL-440 2110 chrX 449869 449921 chrX 449986 450038 16 107 3.5 4.5 4.0 3.2 169 chrX 449869 intron CG32816 - chrX 449954 intron CG32816 - chrX 450038 intron CG32816 - chrX_16_445001 chrX_445001 RAL-440 2111 chrX 450349 450394 chrX 450445 450485 6 95 1.0 1.5 1.2 2.7 136 chrX 450349 intron CG32816 - chrX 450417 intron CG32816 - chrX 450485 intron CG32816 - chrX_6_450001 chrX_450001 RAL-440 2112 chrX 547620 547666 chrX 547876 547902 12 251 6.0 4.0 5.0 2.0 282 chrX 547620 intron Appl + chrX 547761 intron Appl + chrX 547902 intron Appl + chrX_12_545001 chrX_545001 RAL-440 2113 chrX 667659 667678 chrX 667746 667782 5 98 2.0 2.0 2.0 1.7 123 chrX 667659 intergenic not near genes chrX 667720 intergenic not near genes chrX 667782 intergenic not near genes chrX_5_665001 chrX_665001 RAL-440 2114 chrX 670284 670294 chrX 670363 670373 4 83 0.5 2.0 1.2 1.8 89 chrX 670284 intergenic not near genes chrX 670328 intergenic not near genes chrX 670373 intergenic not near genes chrX_4_670001 chrX_670001 RAL-440 2115 chrX 680842 680859 chrX 680927 680939 5 82 2.0 6.0 4.0 1.0 97 chrX 680842 intergenic not near genes chrX 680890 intergenic not near genes chrX 680939 intergenic not near genes chrX_5_680001 chrX_680001 RAL-440 2116 chrX 802285 802318 chrX 802365 802390 9 77 6.0 3.0 4.5 1.6 105 chrX 802285 exon CG13359 - chrX 802338 exon CG13359 - chrX 802390 exon CG13359 - chrX_9_800001 chrX_800001 RAL-440 2117 chrX 812265 812289 chrX 817908 817930 297 4 5646 2.5 3.0 2.8 1.1 5665 chrX 812265 intron CG43867 - chrX 815098 intron CG43867 - chrX 817930 intron CG43867 - chrX_4_815001 chrX_815001 RAL-440 2118 chrX 827599 827606 chrX 835396 835408 roo 5 7798 8.0 8.5 8.2 0.5 7809 chrX 827599 intron CG43867 - chrX 831504 intron CG43867 - chrX 835408 intron CG43867 - chrX_5_830001 chrX_830001 RAL-440 2119 chrX 827608 827631 chrX 835395 835443 roo 14 7800 4.5 8.0 6.2 1.9 7835 chrX 827608 intron CG43867 - chrX 831526 intron CG43867 - chrX 835443 intron CG43867 - chrX_14_830001 chrX_830001 RAL-440 2120 chrX 906686 906720 chrX 908490 908510 S-element 10 1800 3.0 7.0 5.0 1.7 1824 chrX 906686 intron CG43867 - chrX 907598 intron CG43867 - chrX 908510 intron CG43867 - chrX_10_905001 chrX_905001 RAL-440 2121 chrX 912010 912054 chrX 912117 912148 7 97 1.5 3.5 2.5 2.0 138 chrX 912010 intron CG43867 - chrX 912079 intron CG43867 - chrX 912148 intron CG43867 - chrX_7_910001 chrX_910001 RAL-440 2122 chrX 1051070 1051085 chrX 1051147 1051173 6 83 9.0 9.5 9.2 0.6 103 chrX 1051070 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051173 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-440 2123 chrX 1053117 1053120 chrX 16983077 16983077 6 15929958 16.5 7.5 12.0 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-440 2124 chrX 1253737 1253763 chrX 1253815 1253865 8 92 1.0 4.5 2.8 2.1 128 chrX 1253737 intron Atf3 - chrX 1253801 intron Atf3 - chrX 1253865 intron Atf3 - chrX_8_1250001 chrX_1250001 RAL-440 2125 chrX 1357770 1357806 chrX 1367947 1367984 Doc 15 10178 3.5 5.5 4.5 2.7 10214 chrX 1357770 intergenic png - chrX 1362877 intergenic not near genes chrX 1367984 intergenic not near genes chrX_15_1360001 chrX_1360001 RAL-440 2126 chrX 1518020 1518037 chrX 1523442 1523442 jockey 4 5415 5.5 6.0 5.8 0.6 5422 chrX 1518020 intergenic inc + chrX 1520731 intergenic not near genes chrX 1523442 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-440 2127 chrX 1518045 1518076 chrX 1523441 1523452 jockey 10 5407 2.5 6.0 4.2 1.9 5407 chrX 1518045 intergenic inc + chrX 1520748 intergenic not near genes chrX 1523452 intergenic not near genes chrX_10_1520001 chrX_1520001 RAL-440 2128 chrX 1674845 1674874 chrX 1674931 1674932 6 80 6.5 2.0 4.2 1.2 87 chrX 1674845 3` UTR CG32809 - chrX 1674888 3` UTR CG32809 - chrX 1674932 3` UTR CG32809 - chrX_6_1670001 chrX_1670001 RAL-440 2129 chrX 1930524 1930570 chrX 1938115 1938161 opus 6 7583 1.5 4.0 2.8 1.6 7637 chrX 1930524 intergenic CG11596 + chrX 1934342 intergenic not near genes chrX 1938161 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-440 2130 chrX 2287520 2287547 chrX 2288217 2288244 4 692 2.0 0.0 1.0 2.0 724 chrX 2287520 intron CG2865 - chrX 2287882 intron CG2865 - chrX 2288244 intron CG2865 - chrX_4_2285001 chrX_2285001 RAL-440 2131 chrX 2320472 2320504 chrX 2320552 2320562 5 73 3.5 2.0 2.8 1.3 90 chrX 2320472 intron phl + chrX 2320517 intron phl + chrX 2320562 intron phl + chrX_5_2320001 chrX_2320001 RAL-440 2132 chrX 2385734 2385762 chrX 2385818 2385858 7 90 3.0 3.5 3.2 1.7 124 chrX 2385734 intron PsGEF - chrX 2385796 intron PsGEF - chrX 2385858 intron PsGEF - chrX_7_2385001 chrX_2385001 RAL-440 2133 chrX 2578826 2578837 chrX 2578907 2578930 6 90 3.0 7.5 5.2 1.0 104 chrX 2578826 intergenic Pdfr +,Vha36-3 - chrX 2578878 intergenic Vha36-3 -,Pdfr + chrX 2578930 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-440 2134 chrX 2635359 2635401 chrX 2635484 2635518 10 122 4.0 3.0 3.5 2.2 159 chrX 2635359 intron sgg + chrX 2635438 intron sgg + chrX 2635518 intron sgg + chrX_10_2635001 chrX_2635001 RAL-440 2135 chrX 2664378 2664418 chrX 2665538 2665568 1360 6 1154 5.5 1.5 3.5 1.3 1190 chrX 2664378 intron sgg + chrX 2664973 intron sgg + chrX 2665568 intron sgg + chrX_6_2660001 chrX_2660001 RAL-440 2136 chrX 2844889 2844929 chrX 2852309 2852358 mdg1 10 7422 4.5 3.5 4.0 2.0 7469 chrX 2844889 intron kirre + chrX 2848624 intron kirre + chrX 2852358 intron kirre + chrX_10_2845001 chrX_2845001 RAL-440 2137 chrX 2888101 2888141 chrX 2888189 2888235 7 81 3.5 4.0 3.8 1.5 134 chrX 2888101 intron kirre + chrX 2888168 intron kirre + chrX 2888235 intron kirre + chrX_7_2885001 chrX_2885001 RAL-440 2138 chrX 2896182 2896192 chrX 2896414 2896444 4 237 3.0 5.5 4.2 0.8 262 chrX 2896182 intron kirre + chrX 2896313 intron kirre + chrX 2896444 intron kirre + chrX_4_2895001 chrX_2895001 RAL-440 2139 chrX 3028801 3028814 chrX 3028905 3028917 4 104 2.0 5.0 3.5 0.9 116 chrX 3028801 intron kirre + chrX 3028859 intron kirre + chrX 3028917 intron kirre + chrX_4_3025001 chrX_3025001 RAL-440 2140 chrX 3038738 3038739 chrX 3038826 3038826 4 91 7.5 3.5 5.5 0.6 88 chrX 3038738 intron kirre + chrX 3038782 intron kirre + chrX 3038826 intron kirre + chrX_4_3035001 chrX_3035001 RAL-440 2141 chrX 3038749 3038768 chrX 3038824 3038849 6 82 2.0 1.5 1.8 2.1 100 chrX 3038749 intron kirre + chrX 3038799 intron kirre + chrX 3038849 intron kirre + chrX_6_3035001 chrX_3035001 RAL-440 2142 chrX 3275518 3275555 chrX 3275613 3275614 6 88 2.0 2.0 2.0 2.0 96 chrX 3275518 intron dnc + chrX 3275566 intron dnc + chrX 3275614 intron dnc + chrX_6_3275001 chrX_3275001 RAL-440 2143 chrX 3293186 3293226 chrX 3293358 3293391 6 172 1.0 3.0 2.0 2.0 205 chrX 3293186 intron dnc + chrX 3293288 intron dnc + chrX 3293391 intron dnc + chrX_6_3290001 chrX_3290001 RAL-440 2144 chrX 3306348 3306369 chrX 3306425 3306438 4 81 4.5 3.0 3.8 0.8 90 chrX 3306348 intron dnc + chrX 3306393 intron dnc + chrX 3306438 intron dnc + chrX_4_3305001 chrX_3305001 RAL-440 2145 chrX 3334322 3334350 chrX 3334398 3334448 7 91 1.0 4.5 2.8 1.8 126 chrX 3334322 exon,intron dnc +,CR44886 - chrX 3334385 intron,intron dnc +,CR44886 - chrX 3334448 intron,intron dnc +,CR44886 - chrX_7_3330001 chrX_3330001 RAL-440 2146 chrX 3408977 3409017 chrX 3409064 3409104 8 86 2.0 3.5 2.8 2.1 127 chrX 3408977 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409104 intron,intron CR44999 +,CG12535 - chrX_8_3405001 chrX_3405001 RAL-440 2147 chrX 3415015 3415046 chrX 3421202 3421235 3S18 10 6194 2.0 4.5 3.2 2.4 6220 chrX 3415015 intron,intron CR44999 +,CG12535 - chrX 3418125 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_10_3415001 chrX_3415001 RAL-440 2148 chrX 3493082 3493125 chrX 3502253 3502273 roo 6 9160 5.5 2.5 4.0 1.2 9191 chrX 3493082 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502273 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-440 2149 chrX 3597548 3597584 chrX 3619721 3619741 roo 12 22179 3.5 3.0 3.2 2.9 22193 chrX 3597548 intron AstA-R1 + chrX 3608644 intron AstA-R1 + chrX 3619741 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-440 2150 chrX 3630537 3630573 chrX 3630633 3630669 9 88 0.5 6.0 3.2 2.1 132 chrX 3630537 intron AstA-R1 + chrX 3630603 intron AstA-R1 + chrX 3630669 intron AstA-R1 + chrX_9_3630001 chrX_3630001 RAL-440 2151 chrX 3648903 3648950 chrX 3649468 3649480 12 557 3.0 2.0 2.5 3.4 577 chrX 3648903 intron AstA-R1 + chrX 3649192 intron AstA-R1 + chrX 3649480 intron AstA-R1 + chrX_12_3645001 chrX_3645001 RAL-440 2152 chrX 3713093 3713137 chrX 3713214 3713266 8 123 1.0 1.5 1.2 3.6 173 chrX 3713093 intron Rala - chrX 3713180 intron Rala - chrX 3713266 intron Rala - chrX_8_3710001 chrX_3710001 RAL-440 2153 chrX 3726753 3726772 chrX 3730170 3730174 NOF 5 3410 10.5 4.0 7.2 0.6 3421 chrX 3726753 intron tlk + chrX 3728464 intron tlk + chrX 3730174 intron tlk + chrX_5_3725001 chrX_3725001 RAL-440 2154 chrX 3862817 3862842 chrX 3862906 3862946 5 99 4.5 2.0 3.2 1.2 129 chrX 3862817 intergenic yin - chrX 3862882 intergenic yin - chrX 3862946 intergenic yin - chrX_5_3860001 chrX_3860001 RAL-440 2155 chrX 3874721 3874762 chrX 3874821 3874843 8 91 4.0 3.0 3.5 1.8 122 chrX 3874721 intron CG2930 + chrX 3874782 intron CG2930 + chrX 3874843 intron CG2930 + chrX_8_3870001 chrX_3870001 RAL-440 2156 chrX 3950783 3950829 chrX 3950881 3950929 12 95 3.5 3.0 3.2 2.9 146 chrX 3950783 intron Vap-33A + chrX 3950856 intron Vap-33A + chrX 3950929 intron Vap-33A + chrX_12_3950001 chrX_3950001 RAL-440 2157 chrX 3986858 3986894 chrX 3994497 3994547 412 8 7647 3.0 4.0 3.5 1.8 7689 chrX 3986858 intergenic not near genes chrX 3990702 intergenic not near genes chrX 3994547 intergenic not near genes chrX_8_3990001 chrX_3990001 RAL-440 2158 chrX 4048480 4048528 chrX 4048576 4048616 8 85 0.5 2.5 1.5 3.2 136 chrX 4048480 3` UTR CR45482 - chrX 4048548 3` UTR CR45482 - chrX 4048616 3` UTR CR45482 - chrX_8_4045001 chrX_4045001 RAL-440 2159 chrX 4101862 4101890 chrX 4101955 4101990 5 94 2.0 6.0 4.0 1.0 128 chrX 4101862 exon CG15375 + chrX 4101926 exon CG15375 + chrX 4101990 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-440 2160 chrX 4101892 4101899 chrX 4101948 4101985 4 80 2.0 5.0 3.5 0.9 93 chrX 4101892 exon CG15375 + chrX 4101938 exon CG15375 + chrX 4101985 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-440 2161 chrX 4132653 4132689 chrX 4132838 4132860 4 182 3.5 3.5 3.5 0.9 207 chrX 4132653 3` UTR GlcAT-I + chrX 4132756 3` UTR GlcAT-I + chrX 4132860 intergenic Fas2 -,GlcAT-I + chrX_4_4130001 chrX_4130001 RAL-440 2162 chrX 4157890 4157917 chrX 4164958 4164981 297 6 7066 6.0 3.0 4.5 1.1 7091 chrX 4157890 intron Fas2 - chrX 4161436 intron Fas2 - chrX 4164981 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-440 2163 chrX 4206225 4206238 chrX 4206351 4206364 7 130 0.5 2.0 1.2 3.2 139 chrX 4206225 intergenic Fas2 - chrX 4206294 intergenic Fas2 - chrX 4206364 intergenic Fas2 - chrX_7_4205001 chrX_4205001 RAL-440 2164 chrX 4216327 4216334 chrX 4216422 4216433 4 98 7.5 4.5 6.0 0.6 106 chrX 4216327 intergenic not near genes chrX 4216380 intergenic CG15571 - chrX 4216433 intergenic CG15571 - chrX_4_4215001 chrX_4215001 RAL-440 2165 chrX 4252943 4252972 chrX 4253034 4253069 4 96 5.0 2.0 3.5 0.9 126 chrX 4252943 intergenic CG15576 - chrX 4253006 intergenic CG15576 - chrX 4253069 intergenic CG15576 - chrX_4_4250001 chrX_4250001 RAL-440 2166 chrX 4700381 4700390 chrX 4700737 4700753 jockey 4 358 8.5 4.0 6.2 0.6 372 chrX 4700381 3` UTR ctp + chrX 4700567 3` UTR ctp + chrX 4700753 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-440 2167 chrX 4700392 4700421 chrX 4700733 4700773 jockey 9 352 5.0 3.0 4.0 1.8 381 chrX 4700392 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700773 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-440 2168 chrX 4731797 4731830 chrX 4736907 4736922 jockey 9 5099 6.0 6.5 6.2 1.2 5125 chrX 4731797 intergenic not near genes chrX 4734360 intergenic not near genes chrX 4736922 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-440 2169 chrX 4763248 4763266 chrX 4763745 4763773 Stalker4 7 501 7.5 6.0 6.8 0.9 525 chrX 4763248 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763773 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-440 2170 chrX 4792377 4792395 chrX 4792813 4792843 jockey 6 444 4.0 3.5 3.8 1.2 466 chrX 4792377 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792843 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-440 2171 chrX 4827952 4827994 chrX 4835343 4835375 Stalker4 7 7374 2.0 3.0 2.5 2.0 7423 chrX 4827952 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835375 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-440 2172 chrX 4827995 4828001 chrX 4835340 4835376 Stalker4 5 7360 2.0 2.0 2.0 1.7 7381 chrX 4827995 intergenic not near genes chrX 4831686 intergenic not near genes chrX 4835376 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-440 2173 chrX 4871196 4871229 chrX 4871309 4871317 11 112 2.0 2.5 2.2 3.4 121 chrX 4871196 intron CG42594 + chrX 4871256 intron CG42594 + chrX 4871317 intron CG42594 + chrX_11_4870001 chrX_4870001 RAL-440 2174 chrX 4931330 4931373 chrX 4931444 4931480 11 106 27.0 24.0 25.5 0.4 150 chrX 4931330 intron CG44774 - chrX 4931405 intron CG44774 - chrX 4931480 intron CG44774 - chrX_11_4930001 chrX_4930001 RAL-440 2175 chrX 4990023 4990070 chrX 4997257 4997295 roo 11 7229 3.0 3.0 3.0 2.8 7272 chrX 4990023 intron CR44833 - chrX 4993659 intron CR44833 - chrX 4997295 intron CR44833 - chrX_11_4990001 chrX_4990001 RAL-440 2176 chrX 5096276 5096304 chrX 5103845 5103885 springer 6 7569 1.0 2.0 1.5 2.4 7609 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100080 intron,intron CG15465 +,rg + chrX 5103885 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-440 2177 chrX 5203669 5203713 chrX 5203762 5203794 6 81 2.0 1.5 1.8 2.1 125 chrX 5203669 intron,intron CG15465 +,rg + chrX 5203732 intron,intron CG15465 +,rg + chrX 5203794 intron,intron CG15465 +,rg + chrX_6_5200001 chrX_5200001 RAL-440 2178 chrX 5204674 5204722 chrX 5204897 5204931 6 214 2.5 3.0 2.8 1.6 257 chrX 5204674 intron,intron CG15465 +,rg + chrX 5204802 intron,intron CG15465 +,rg + chrX 5204931 intron,intron CG15465 +,rg + chrX_6_5200001 chrX_5200001 RAL-440 2179 chrX 5215091 5215115 chrX 5215179 5215216 5 93 5.0 3.5 4.2 1.0 125 chrX 5215091 intron,intron CG15465 +,rg + chrX 5215154 intron,intron CG15465 +,rg + chrX 5215216 intron,intron CG15465 +,rg + chrX_5_5215001 chrX_5215001 RAL-440 2180 chrX 5277565 5277582 chrX 5277733 5277764 5 185 2.5 6.5 4.5 0.9 199 chrX 5277565 intergenic not near genes chrX 5277664 intergenic not near genes chrX 5277764 intergenic not near genes chrX_5_5275001 chrX_5275001 RAL-440 2181 chrX 5338698 5338735 chrX 5339960 5339991 jockey 4 1261 1.0 5.5 3.2 1.0 1293 chrX 5338698 intergenic not near genes chrX 5339344 intergenic not near genes chrX 5339991 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-440 2182 chrX 5349257 5349309 chrX 5349354 5349406 11 90 4.0 2.5 3.2 2.6 149 chrX 5349257 intron SK + chrX 5349332 intron SK + chrX 5349406 intron SK + chrX_11_5345001 chrX_5345001 RAL-440 2183 chrX 5473569 5473617 chrX 5473665 5473713 9 92 2.5 4.5 3.5 2.0 144 chrX 5473569 intron SPR + chrX 5473641 intron SPR + chrX 5473713 intron SPR + chrX_9_5470001 chrX_5470001 RAL-440 2184 chrX 5512038 5512053 chrX 5512163 5512170 4 123 2.0 4.5 3.2 1.0 132 chrX 5512038 intergenic not near genes chrX 5512104 intergenic not near genes chrX 5512170 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-440 2185 chrX 5883792 5883795 chrX 5884053 5884056 pogo 4 260 10.5 5.5 8.0 0.4 264 chrX 5883792 intron CR45668 - chrX 5883924 intron CR45668 - chrX 5884056 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-440 2186 chrX 5883803 5883841 chrX 5884049 5884096 pogo 8 254 3.0 5.0 4.0 1.6 293 chrX 5883803 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884096 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-440 2187 chrX 5884154 5884191 chrX 5884406 5884443 pogo 12 254 2.5 5.0 3.8 2.5 289 chrX 5884154 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884443 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-440 2188 chrX 6003285 6003310 chrX 6003366 6003410 7 83 0.5 2.5 1.5 2.8 125 chrX 6003285 intron CR44498 + chrX 6003348 intron CR44498 + chrX 6003410 intron CR44498 + chrX_7_6000001 chrX_6000001 RAL-440 2189 chrX 6009224 6009275 chrX 6009584 6009633 5 354 1.0 4.5 2.8 1.3 409 chrX 6009224 intron mab-21 - chrX 6009428 intron mab-21 - chrX 6009633 intron mab-21 - chrX_5_6005001 chrX_6005001 RAL-440 2190 chrX 6118678 6118724 chrX 6118778 6118810 14 92 2.5 4.5 3.5 3.1 132 chrX 6118678 intron Ca-alpha1T - chrX 6118744 intron Ca-alpha1T - chrX 6118810 intron Ca-alpha1T - chrX_14_6115001 chrX_6115001 RAL-440 2191 chrX 6171589 6171610 chrX 6179015 6179055 Quasimodo 6 7434 3.5 4.5 4.0 1.2 7466 chrX 6171589 intron Ca-alpha1T - chrX 6175322 intron Ca-alpha1T - chrX 6179055 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-440 2192 chrX 6300922 6300926 chrX 6302279 6302310 4 1366 6.0 27.5 16.8 0.2 1388 chrX 6300922 exon CG12219 - chrX 6301616 intergenic CG12219 - chrX 6302310 intergenic not near genes chrX_4_6300001 chrX_6300001 RAL-440 2193 chrX 6312183 6312226 chrX 6312274 6312306 17 91 2.5 4.5 3.5 3.8 123 chrX 6312183 intron CG15894 + chrX 6312244 intron CG15894 + chrX 6312306 intron CG15894 + chrX_17_6310001 chrX_6310001 RAL-440 2194 chrX 6388651 6388693 chrX 6388747 6388779 7 93 1.5 3.5 2.5 2.0 128 chrX 6388651 intergenic not near genes chrX 6388715 intergenic not near genes chrX 6388779 intergenic not near genes chrX_7_6385001 chrX_6385001 RAL-440 2195 chrX 6392884 6392902 chrX 6397653 6397665 Doc 4 4770 2.0 4.0 3.0 1.0 4781 chrX 6392884 intergenic not near genes chrX 6395274 intergenic not near genes chrX 6397665 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-440 2196 chrX 6487976 6487982 chrX 6488064 6488073 4 88 6.0 4.5 5.2 0.6 97 chrX 6487976 intron CG42340 - chrX 6488024 intron CG42340 - chrX 6488073 intron CG42340 - chrX_4_6485001 chrX_6485001 RAL-440 2197 chrX 6562815 6562849 chrX 6571302 6571337 Tirant 5 8489 3.0 1.5 2.2 1.6 8522 chrX 6562815 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571337 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-440 2198 chrX 6578781 6578824 chrX 6578890 6578908 5 94 4.0 1.0 2.5 1.4 127 chrX 6578781 intron CG34417 + chrX 6578844 intron CG34417 + chrX 6578908 intron CG34417 + chrX_5_6575001 chrX_6575001 RAL-440 2199 chrX 6605459 6605509 chrX 6608500 6608551 Burdock 10 3036 0.5 6.5 3.5 2.2 3092 chrX 6605459 intron pigs + chrX 6607005 intron pigs + chrX 6608551 intron pigs + chrX_10_6605001 chrX_6605001 RAL-440 2200 chrX 6629771 6629795 chrX 6629874 6629901 6 102 5.0 1.5 3.2 1.4 130 chrX 6629771 intron pigs + chrX 6629836 intron pigs + chrX 6629901 intron pigs + chrX_6_6625001 chrX_6625001 RAL-440 2201 chrX 6792075 6792088 chrX 6792180 6792199 5 106 1.5 5.5 3.5 1.1 124 chrX 6792075 intron C3G - chrX 6792137 intron C3G - chrX 6792199 intron C3G - chrX_5_6790001 chrX_6790001 RAL-440 2202 chrX 6804998 6805050 chrX 6805095 6805145 17 95 6.0 8.5 7.2 2.1 147 chrX 6804998 intron pod1 + chrX 6805072 intron pod1 + chrX 6805145 intron pod1 + chrX_17_6805001 chrX_6805001 RAL-440 2203 chrX 6984609 6984637 chrX 6984705 6984710 4 90 5.0 2.5 3.8 0.8 101 chrX 6984609 intron ogre - chrX 6984660 intron ogre - chrX 6984710 intron ogre - chrX_4_6980001 chrX_6980001 RAL-440 2204 chrX 6989482 6989526 chrX 6989589 6989613 10 96 2.0 3.0 2.5 2.9 131 chrX 6989482 intron ogre - chrX 6989548 intron ogre - chrX 6989613 intron ogre - chrX_10_6985001 chrX_6985001 RAL-440 2205 chrX 7023592 7023614 chrX 7030998 7031012 Tabor 5 7406 12.0 4.0 8.0 0.6 7420 chrX 7023592 intron CG12541 - chrX 7027302 intron CG12541 - chrX 7031012 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-440 2206 chrX 7023618 7023633 chrX 7030989 7031033 Tabor 4 7384 8.5 3.0 5.8 0.6 7415 chrX 7023618 intron CG12541 - chrX 7027326 intron CG12541 - chrX 7031033 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-440 2207 chrX 7082391 7082400 chrX 7082456 7082462 6 72 2.0 5.5 3.8 1.2 71 chrX 7082391 intron Sxl - chrX 7082426 intron Sxl - chrX 7082462 intron Sxl - chrX_6_7080001 chrX_7080001 RAL-440 2208 chrX 7125238 7125275 chrX 7134402 7134443 roo 10 9171 1.5 2.5 2.0 3.3 9205 chrX 7125238 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134443 intergenic not near genes chrX_10_7125001 chrX_7125001 RAL-440 2209 chrX 7227903 7227918 chrX 7228001 7228005 4 93 1.5 0.0 0.8 2.2 102 chrX 7227903 intron,intron CG9650 +,CR44357 - chrX 7227954 intron,intron CG9650 +,CR44357 - chrX 7228005 intron,intron CG9650 +,CR44357 - chrX_4_7225001 chrX_7225001 RAL-440 2210 chrX 7294502 7294542 chrX 7294612 7294637 12 98 4.0 3.0 3.5 2.7 135 chrX 7294502 intron,intron CR44357 -,CG1677 - chrX 7294570 intron,intron CR44357 -,CG1677 - chrX 7294637 intron,intron CR44357 -,CG1677 - chrX_12_7290001 chrX_7290001 RAL-440 2211 chrX 7633944 7633959 chrX 7634028 7634041 4 90 2.5 1.0 1.8 1.4 97 chrX 7633944 intron ct + chrX 7633992 intron ct + chrX 7634041 intron ct + chrX_4_7630001 chrX_7630001 RAL-440 2212 chrX 7702517 7702520 chrX 7702604 7702622 5 98 1.0 6.5 3.8 1.0 105 chrX 7702517 intron CHES-1-like - chrX 7702570 intron CHES-1-like - chrX 7702622 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-440 2213 chrX 7702897 7702939 chrX 7703344 7703365 jockey 13 447 3.0 0.0 1.5 5.2 468 chrX 7702897 intron CHES-1-like - chrX 7703131 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_13_7700001 chrX_7700001 RAL-440 2214 chrX 7832439 7832465 chrX 7832542 7832574 8 102 1.5 2.5 2.0 2.7 135 chrX 7832439 intron CG1402 + chrX 7832506 intron CG1402 + chrX 7832574 intron CG1402 + chrX_8_7830001 chrX_7830001 RAL-440 2215 chrX 8031411 8031453 chrX 8035740 8035769 Juan 11 4324 5.0 6.5 5.8 1.6 4358 chrX 8031411 intergenic not near genes chrX 8033590 intergenic not near genes chrX 8035769 3` UTR CG2233 - chrX_11_8030001 chrX_8030001 RAL-440 2216 chrX 8075133 8075174 chrX 8075247 8075275 5 109 3.0 2.0 2.5 1.4 142 chrX 8075133 exon Upf2 - chrX 8075204 5` UTR Upf2 - chrX 8075275 5` UTR Upf2 - chrX_5_8075001 chrX_8075001 RAL-440 2217 chrX 8092281 8092320 chrX 8092377 8092423 6 100 2.0 1.5 1.8 2.1 142 chrX 8092281 intron Ubc-E2H - chrX 8092352 intron Ubc-E2H - chrX 8092423 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-440 2218 chrX 8361937 8361961 chrX 8362056 8362090 6 122 1.5 6.0 3.8 1.2 153 chrX 8361937 intron nAChRalpha3 - chrX 8362014 intron nAChRalpha3 - chrX 8362090 intron nAChRalpha3 - chrX_6_8360001 chrX_8360001 RAL-440 2219 chrX 8509108 8509150 chrX 8509195 8509230 6 88 1.0 4.5 2.8 1.6 122 chrX 8509108 intron CG33181 + chrX 8509169 intron CG33181 + chrX 8509230 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-440 2220 chrX 8727383 8727428 chrX 8727477 8727522 6 93 0.5 0.5 0.5 4.0 139 chrX 8727383 intergenic not near genes chrX 8727452 intergenic not near genes chrX 8727522 intergenic not near genes chrX_6_8725001 chrX_8725001 RAL-440 2221 chrX 8744283 8744317 chrX 8744449 8744477 10 163 1.0 2.5 1.8 3.6 194 chrX 8744283 intergenic not near genes chrX 8744380 intergenic not near genes chrX 8744477 intergenic not near genes chrX_10_8740001 chrX_8740001 RAL-440 2222 chrX 8755413 8755446 chrX 8755523 8755547 10 112 1.0 2.5 1.8 3.6 134 chrX 8755413 intergenic not near genes chrX 8755480 intergenic not near genes chrX 8755547 intergenic not near genes chrX_10_8755001 chrX_8755001 RAL-440 2223 chrX 8922328 8922363 chrX 8922758 8922789 jockey 10 442 3.5 3.5 3.5 2.2 461 chrX 8922328 intron rdgA + chrX 8922558 intron rdgA + chrX 8922789 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-440 2224 chrX 8948758 8948784 chrX 8956272 8956289 roo 6 7521 2.5 3.0 2.8 1.6 7531 chrX 8948758 intron rdgA + chrX 8952524 intron rdgA + chrX 8956289 intron rdgA + chrX_6_8950001 chrX_8950001 RAL-440 2225 chrX 9010204 9010230 chrX 9010297 9010313 6 91 9.5 4.0 6.8 0.8 109 chrX 9010204 intron,intron rdgA +,CR43836 - chrX 9010258 intron,intron rdgA +,CR43836 - chrX 9010313 intron,intron rdgA +,CR43836 - chrX_6_9010001 chrX_9010001 RAL-440 2226 chrX 9439429 9439446 chrX 9439506 9439532 7 87 7.5 5.0 6.2 1.0 103 chrX 9439429 intron mgl - chrX 9439480 intron mgl - chrX 9439532 intron mgl - chrX_7_9435001 chrX_9435001 RAL-440 2227 chrX 9508129 9508168 chrX 9509662 9509691 jockey 8 1529 3.5 4.0 3.8 1.7 1562 chrX 9508129 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509691 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-440 2228 chrX 9531641 9531673 chrX 9531739 9531757 4 94 4.5 0.5 2.5 1.1 116 chrX 9531641 intron CG32700 - chrX 9531699 intron CG32700 - chrX 9531757 intron CG32700 - chrX_4_9530001 chrX_9530001 RAL-440 2229 chrX 9555417 9555445 chrX 9555534 9555573 5 118 4.0 3.0 3.5 1.1 156 chrX 9555417 3` UTR RpS28b + chrX 9555495 3` UTR RpS28b + chrX 9555573 3` UTR RpS28b + chrX_5_9555001 chrX_9555001 RAL-440 2230 chrX 9575802 9575811 chrX 9576115 9576129 mdg3 5 325 5.5 7.0 6.2 0.7 327 chrX 9575802 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576129 intron,exon CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-440 2231 chrX 9575815 9575820 chrX 9576113 9576136 mdg3 4 314 4.0 6.5 5.2 0.6 321 chrX 9575815 intron,exon CG32699 -,CG42395 - chrX 9575976 intron,intron CG32699 -,CG42395 - chrX 9576136 intron,5` UTR CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-440 2232 chrX 9758029 9758068 chrX 9758134 9758173 7 105 3.5 0.0 1.8 2.5 144 chrX 9758029 intergenic not near genes chrX 9758101 intergenic not near genes chrX 9758173 intergenic not near genes chrX_7_9755001 chrX_9755001 RAL-440 2233 chrX 10106693 10106719 chrX 10106771 10106809 7 95 2.5 2.5 2.5 2.0 116 chrX 10106693 intron RhoU + chrX 10106751 intron RhoU + chrX 10106809 intron RhoU + chrX_7_10105001 chrX_10105001 RAL-440 2234 chrX 10138197 10138239 chrX 10145720 10145761 412 8 7516 3.5 4.5 4.0 1.6 7564 chrX 10138197 intron,intron RhoU +,CR44894 - chrX 10141979 intron,intron RhoU +,CR44894 - chrX 10145761 intron,intron RhoU +,CR44894 - chrX_8_10140001 chrX_10140001 RAL-440 2235 chrX 10154270 10154304 chrX 10154365 10154387 8 90 2.5 3.0 2.8 2.1 117 chrX 10154270 intron,intron CR44894 -,CG12645 + chrX 10154328 intron,intron CR44894 -,CG12645 + chrX 10154387 intron,exon CR44894 -,CG12645 + chrX_8_10150001 chrX_10150001 RAL-440 2236 chrX 10167668 10167680 chrX 10167784 10167792 4 115 4.5 3.0 3.8 0.8 124 chrX 10167668 intron,intron CR44894 -,CG43902 + chrX 10167730 intron,intron CR44894 -,CG43902 + chrX 10167792 intron,intron CR44894 -,CG43902 + chrX_4_10165001 chrX_10165001 RAL-440 2237 chrX 10216829 10216852 chrX 10216925 10216936 8 95 5.5 11.0 8.2 0.9 107 chrX 10216829 3` UTR l(1)G0230 + chrX 10216882 3` UTR l(1)G0230 + chrX 10216936 3` UTR l(1)G0230 + chrX_8_10215001 chrX_10215001 RAL-440 2238 chrX 10267307 10267326 chrX 10276462 10276482 roo 4 9161 0.5 1.0 0.8 2.2 9175 chrX 10267307 3` UTR alpha-Man-I - chrX 10271894 intron alpha-Man-I - chrX 10276482 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-440 2239 chrX 10317549 10317575 chrX 10317633 10317673 4 92 0.5 0.5 0.5 2.7 124 chrX 10317549 intron alpha-Man-I - chrX 10317611 intron alpha-Man-I - chrX 10317673 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-440 2240 chrX 10348815 10348831 chrX 10356368 10356395 springer 5 7567 0.5 1.5 1.0 2.5 7580 chrX 10348815 intergenic snoRNA:U3:9B + chrX 10352605 intergenic not near genes chrX 10356395 intergenic l(1)G0289 - chrX_5_10350001 chrX_10350001 RAL-440 2241 chrX 10446664 10446715 chrX 10446766 10446815 8 97 4.0 4.0 4.0 1.6 151 chrX 10446664 intron CG32683 - chrX 10446740 intron CG32683 - chrX 10446815 intron CG32683 - chrX_8_10445001 chrX_10445001 RAL-440 2242 chrX 10453051 10453098 chrX 10453262 10453309 9 208 3.0 2.5 2.8 2.4 258 chrX 10453051 intron CG32683 - chrX 10453180 intron CG32683 - chrX 10453309 intron CG32683 - chrX_9_10450001 chrX_10450001 RAL-440 2243 chrX 10550856 10550883 chrX 10552317 10552355 hobo 9 1469 6.5 2.5 4.5 1.6 1499 chrX 10550856 intron spri - chrX 10551606 intron spri - chrX 10552355 intron spri - chrX_9_10550001 chrX_10550001 RAL-440 2244 chrX 10590797 10590811 chrX 10590868 10590895 6 82 2.5 5.0 3.8 1.2 98 chrX 10590797 intergenic Hmr - chrX 10590846 intergenic Hmr - chrX 10590895 intergenic Hmr - chrX_6_10590001 chrX_10590001 RAL-440 2245 chrX 10651619 10651644 chrX 10651747 10651777 6 128 2.5 4.0 3.2 1.4 158 chrX 10651619 intron X11Lbeta + chrX 10651698 intron X11Lbeta + chrX 10651777 intron X11Lbeta + chrX_6_10650001 chrX_10650001 RAL-440 2246 chrX 10686048 10686083 chrX 10691185 10691236 roo 9 5148 4.0 4.0 4.0 1.8 5188 chrX 10686048 intron X11Lbeta + chrX 10688642 intron X11Lbeta + chrX 10691236 intron X11Lbeta + chrX_9_10685001 chrX_10685001 RAL-440 2247 chrX 10772678 10772690 chrX 10772766 10772786 Tirant 5 93 3.5 2.0 2.8 1.3 108 chrX 10772678 intron CG15211 + chrX 10772732 intron CG15211 + chrX 10772786 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-440 2248 chrX 10803043 10803049 chrX 10803126 10803138 4 95 9.0 6.5 7.8 0.5 95 chrX 10803043 intron Imp - chrX 10803090 intron Imp - chrX 10803138 intron Imp - chrX_4_10800001 chrX_10800001 RAL-440 2249 chrX 10876645 10876651 chrX 10876707 10876739 5 80 0.0 8.5 4.2 1.0 94 chrX 10876645 intron CG1637 - chrX 10876692 intron CG1637 - chrX 10876739 intron CG1637 - chrX_5_10875001 chrX_10875001 RAL-440 2250 chrX 10982459 10982478 chrX 10982661 10982684 4 195 3.5 2.5 3.0 1.0 225 chrX 10982459 intron CG42339 - chrX 10982572 intron CG42339 - chrX 10982684 intron CG42339 - chrX_4_10980001 chrX_10980001 RAL-440 2251 chrX 11184237 11184283 chrX 11189336 11189363 flea 4 5088 1.5 5.5 3.5 0.9 5126 chrX 11184237 intergenic not near genes chrX 11186800 intergenic not near genes chrX 11189363 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-440 2252 chrX 11254155 11254185 chrX 11254286 11254308 9 125 7.0 2.5 4.8 1.6 153 chrX 11254155 intron CG44422 - chrX 11254232 intron CG44422 - chrX 11254308 intron CG44422 - chrX_9_11250001 chrX_11250001 RAL-440 2253 chrX 11312038 11312092 chrX 11319411 11319438 Stalker2 7 7361 1.5 2.0 1.8 2.5 7400 chrX 11312038 intergenic not near genes chrX 11315738 intergenic not near genes chrX 11319438 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-440 2254 chrX 11379764 11379792 chrX 11379911 11379943 11 152 7.0 6.0 6.5 1.5 179 chrX 11379764 intron dlg1 + chrX 11379854 intron dlg1 + chrX 11379943 intron dlg1 + chrX_11_11375001 chrX_11375001 RAL-440 2255 chrX 11409488 11409526 chrX 11409594 11409615 6 96 3.5 0.5 2.0 2.0 127 chrX 11409488 3` UTR dlg1 + chrX 11409552 3` UTR dlg1 + chrX 11409615 3` UTR dlg1 + chrX_6_11405001 chrX_11405001 RAL-440 2256 chrX 11535029 11535041 chrX 11541511 11541531 Burdock 4 6487 9.0 3.5 6.2 0.6 6502 chrX 11535029 intron Drak + chrX 11538280 intron Drak + chrX 11541531 intron Drak + chrX_4_11535001 chrX_11535001 RAL-440 2257 chrX 11633410 11633444 chrX 11640469 11640517 297 15 7068 6.5 4.5 5.5 2.3 7107 chrX 11633410 intron Ptp10D + chrX 11636964 intron Ptp10D + chrX 11640517 intron Ptp10D + chrX_15_11635001 chrX_11635001 RAL-440 2258 chrX 11719869 11719890 chrX 11719952 11719978 5 92 2.5 2.5 2.5 1.4 109 chrX 11719869 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719978 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-440 2259 chrX 11799009 11799019 chrX 11799102 11799122 4 98 4.0 1.5 2.8 1.1 113 chrX 11799009 intron CkIIbeta + chrX 11799066 intron CkIIbeta + chrX 11799122 intron CkIIbeta + chrX_4_11795001 chrX_11795001 RAL-440 2260 chrX 12038066 12038116 chrX 12038280 12038325 13 205 6.5 3.5 5.0 2.2 259 chrX 12038066 intergenic not near genes chrX 12038196 intergenic not near genes chrX 12038325 intergenic not near genes chrX_13_12035001 chrX_12035001 RAL-440 2261 chrX 12168129 12168153 chrX 12173581 12173615 I-element 4 5454 2.0 2.0 2.0 1.3 5486 chrX 12168129 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173615 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-440 2262 chrX 12176716 12176765 chrX 12176812 12176835 8 82 3.0 3.5 3.2 1.9 119 chrX 12176716 intron,3` UTR Ten-a +,CG1924 - chrX 12176776 intron,3` UTR Ten-a +,CG1924 - chrX 12176835 intron,3` UTR Ten-a +,CG1924 - chrX_8_12175001 chrX_12175001 RAL-440 2263 chrX 12202777 12202801 chrX 12202876 12202905 8 100 1.0 5.5 3.2 1.9 128 chrX 12202777 intron Ten-a + chrX 12202841 intron Ten-a + chrX 12202905 intron Ten-a + chrX_8_12200001 chrX_12200001 RAL-440 2264 chrX 12281958 12281981 chrX 12282050 12282073 4 94 1.0 0.5 0.8 2.2 115 chrX 12281958 intron Ten-a + chrX 12282016 intron Ten-a + chrX 12282073 intron Ten-a + chrX_4_12280001 chrX_12280001 RAL-440 2265 chrX 12350758 12350798 chrX 12350853 12350887 6 93 7.0 0.0 3.5 1.3 129 chrX 12350758 intergenic not near genes chrX 12350822 intergenic not near genes chrX 12350887 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-440 2266 chrX 12465463 12465485 chrX 12465559 12465576 4 95 0.5 0.5 0.5 2.7 113 chrX 12465463 exon CG42258 + chrX 12465520 intron CG42258 + chrX 12465576 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-440 2267 chrX 12469884 12469929 chrX 12470006 12470046 4 118 3.0 3.5 3.2 1.0 162 chrX 12469884 intron CG42258 + chrX 12469965 intron CG42258 + chrX 12470046 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-440 2268 chrX 12705373 12705412 chrX 12705467 12705511 8 90 1.5 1.5 1.5 3.2 138 chrX 12705373 intron Smr - chrX 12705442 intron Smr - chrX 12705511 intron Smr - chrX_8_12705001 chrX_12705001 RAL-440 2269 chrX 12752259 12752310 chrX 12752366 12752412 21 101 6.5 5.5 6.0 3.0 153 chrX 12752259 5` UTR CR44619 + chrX 12752336 5` UTR CR44619 + chrX 12752412 5` UTR CR44619 + chrX_21_12750001 chrX_12750001 RAL-440 2270 chrX 12786010 12786029 chrX 12786105 12786129 7 96 2.0 2.5 2.2 2.2 119 chrX 12786010 3` UTR Pde9 - chrX 12786070 3` UTR Pde9 - chrX 12786129 3` UTR Pde9 - chrX_7_12785001 chrX_12785001 RAL-440 2271 chrX 12930595 12930607 chrX 12937720 12937743 HMS-Beagle 5 7126 3.0 7.0 5.0 0.8 7148 chrX 12930595 intron fne + chrX 12934169 intron fne + chrX 12937743 intron fne + chrX_5_12930001 chrX_12930001 RAL-440 2272 chrX 12971692 12971697 chrX 12971772 12971793 4 85 10.0 6.0 8.0 0.4 101 chrX 12971692 intron,exon CR43636 -,CG15721 + chrX 12971742 intron,exon CR43636 -,CG15721 + chrX 12971793 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-440 2273 chrX 13146586 13146627 chrX 13146691 13146735 5 107 3.0 0.0 1.5 2.0 149 chrX 13146586 intron CG32645 + chrX 13146660 intron CG32645 + chrX 13146735 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-440 2274 chrX 13161676 13161721 chrX 13161773 13161811 7 94 0.5 4.0 2.2 2.2 135 chrX 13161676 3` UTR CG12096 + chrX 13161744 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161811 3` UTR,3` UTR CG12096 +,CG34411 - chrX_7_13160001 chrX_13160001 RAL-440 2275 chrX 13229094 13229105 chrX 13229179 13229209 4 91 0.0 5.0 2.5 1.1 115 chrX 13229094 intron mew - chrX 13229152 intron mew - chrX 13229209 intron mew - chrX_4_13225001 chrX_13225001 RAL-440 2276 chrX 13269206 13269221 chrX 13269296 13269306 4 90 0.5 0.0 0.2 3.3 100 chrX 13269206 intron HDAC4 - chrX 13269256 intron HDAC4 - chrX 13269306 intron HDAC4 - chrX_4_13265001 chrX_13265001 RAL-440 2277 chrX 13278143 13278176 chrX 13278242 13278276 5 95 6.5 1.0 3.8 1.0 133 chrX 13278143 intron HDAC4 - chrX 13278210 intron HDAC4 - chrX 13278276 intron HDAC4 - chrX_5_13275001 chrX_13275001 RAL-440 2278 chrX 13374818 13374849 chrX 13374918 13374944 5 93 6.5 3.0 4.8 0.9 126 chrX 13374818 intron CG1640 + chrX 13374881 intron CG1640 + chrX 13374944 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-440 2279 chrX 13401465 13401496 chrX 13401835 13401856 jockey 6 368 1.5 1.5 1.5 2.4 391 chrX 13401465 intergenic CG1673 +,CG12725 - chrX 13401660 intergenic CG12725 -,CG1673 + chrX 13401856 3` UTR CG12725 - chrX_6_13400001 chrX_13400001 RAL-440 2280 chrX 13429459 13429487 chrX 13430614 13430632 jockey 5 1156 6.5 5.0 5.8 0.7 1173 chrX 13429459 intergenic not near genes chrX 13430046 intergenic not near genes chrX 13430632 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-440 2281 chrX 13463637 13463676 chrX 13469226 13469260 mdg3 9 5590 4.5 1.5 3.0 2.2 5623 chrX 13463637 intron Neto + chrX 13466448 intron Neto + chrX 13469260 intron Neto + chrX_9_13465001 chrX_13465001 RAL-440 2282 chrX 13507302 13507328 chrX 13507393 13507428 6 89 2.5 5.0 3.8 1.2 126 chrX 13507302 intron Neto + chrX 13507365 intron Neto + chrX 13507428 intron Neto + chrX_6_13505001 chrX_13505001 RAL-440 2283 chrX 13734083 13734104 chrX 13734191 13734193 4 96 8.0 6.0 7.0 0.5 110 chrX 13734083 intron g - chrX 13734138 intron g - chrX 13734193 intron g - chrX_4_13730001 chrX_13730001 RAL-440 2284 chrX 13937959 13938009 chrX 13941248 13941250 I-element 8 3275 2.5 1.0 1.8 2.9 3291 chrX 13937959 intron mamo - chrX 13939604 intron mamo - chrX 13941250 intron mamo - chrX_8_13935001 chrX_13935001 RAL-440 2285 chrX 13057297 13057304 chrX 13966949 13966949 4 909648 9.5 11.0 10.2 0.4 909652 chrX 13057297 intron rad + chrX 13512123 intron Neto + chrX 13966949 intron mamo - chrX_4_13510001 chrX_13510001 RAL-440 2286 chrX 13975874 13975899 chrX 13975961 13975989 8 88 0.0 6.5 3.2 1.9 115 chrX 13975874 intron mamo - chrX 13975932 intron mamo - chrX 13975989 intron mamo - chrX_8_13975001 chrX_13975001 RAL-440 2287 chrX 14105022 14105056 chrX 14114172 14114176 roo 9 9148 3.5 3.5 3.5 2.0 9154 chrX 14105022 intergenic not near genes chrX 14109599 intergenic not near genes chrX 14114176 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-440 2288 chrX 14131494 14131523 chrX 14131568 14131587 5 67 1.5 0.5 1.0 2.5 93 chrX 14131494 intergenic not near genes chrX 14131540 intergenic not near genes chrX 14131587 intergenic not near genes chrX_5_14130001 chrX_14130001 RAL-440 2289 chrX 14142867 14142898 chrX 14142964 14142989 5 93 2.0 0.5 1.2 2.3 122 chrX 14142867 intergenic not near genes chrX 14142928 intergenic not near genes chrX 14142989 intergenic not near genes chrX_5_14140001 chrX_14140001 RAL-440 2290 chrX 14150377 14150411 chrX 14152272 14152287 4 1882 25.0 22.0 23.5 0.2 1910 chrX 14150377 intergenic not near genes chrX 14151332 intergenic CG12479 - chrX 14152287 intergenic CG12479 - chrX_4_14150001 chrX_14150001 RAL-440 2291 chrX 14157584 14157603 chrX 14163261 14163276 297 7 5674 5.0 5.5 5.2 1.1 5692 chrX 14157584 intergenic not near genes chrX 14160430 intergenic not near genes chrX 14163276 intergenic not near genes chrX_7_14160001 chrX_14160001 RAL-440 2292 chrX 14163793 14163802 chrX 14167037 14167063 5 3252 14.0 15.5 14.8 0.3 3270 chrX 14163793 intergenic not near genes chrX 14165428 intergenic not near genes chrX 14167063 intergenic not near genes chrX_5_14165001 chrX_14165001 RAL-440 2293 chrX 14188069 14188081 chrX 14188160 14188184 4 96 4.5 2.0 3.2 1.0 115 chrX 14188069 intergenic CG12481 + chrX 14188126 intergenic CG12481 + chrX 14188184 intergenic CG12481 + chrX_4_14185001 chrX_14185001 RAL-440 2294 chrX 14190743 14190777 chrX 14191012 14191052 5 262 3.0 1.0 2.0 1.7 309 chrX 14190743 3` UTR CG11585 + chrX 14190898 intergenic CG11585 +,CG13403 - chrX 14191052 intergenic CG13403 -,CG11585 + chrX_5_14190001 chrX_14190001 RAL-440 2295 chrX 14209448 14209487 chrX 14209554 14209592 5 107 3.0 4.0 3.5 1.1 144 chrX 14209448 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209592 intron,intron l(1)G0007 +,l(1)G0469 - chrX_5_14205001 chrX_14205001 RAL-440 2296 chrX 14244957 14244962 chrX 14245048 14245065 4 98 4.0 3.5 3.8 0.8 108 chrX 14244957 intron CG32599 + chrX 14245011 intron CG32599 + chrX 14245065 intron CG32599 + chrX_4_14245001 chrX_14245001 RAL-440 2297 chrX 14395101 14395131 chrX 14395204 14395249 9 116 0.5 3.0 1.8 3.2 148 chrX 14395101 intron dpr8 + chrX 14395175 intron dpr8 + chrX 14395249 intron dpr8 + chrX_9_14395001 chrX_14395001 RAL-440 2298 chrX 14411243 14411272 chrX 14411341 14411358 5 93 3.5 3.0 3.2 1.2 115 chrX 14411243 intron dpr8 + chrX 14411300 intron dpr8 + chrX 14411358 intron dpr8 + chrX_5_14410001 chrX_14410001 RAL-440 2299 chrX 14411281 14411291 chrX 14411336 14411372 7 82 2.5 3.0 2.8 1.8 91 chrX 14411281 intron dpr8 + chrX 14411326 intron dpr8 + chrX 14411372 intron dpr8 + chrX_7_14410001 chrX_14410001 RAL-440 2300 chrX 14484960 14484996 chrX 14485062 14485104 8 104 0.0 3.0 1.5 3.2 144 chrX 14484960 intergenic not near genes chrX 14485032 intergenic not near genes chrX 14485104 intergenic not near genes chrX_8_14485001 chrX_14485001 RAL-440 2301 chrX 14500489 14500534 chrX 14500605 14500637 7 108 2.0 2.5 2.2 2.2 148 chrX 14500489 intergenic not near genes chrX 14500563 intergenic not near genes chrX 14500637 intergenic not near genes chrX_7_14500001 chrX_14500001 RAL-440 2302 chrX 14636451 14636494 chrX 14641909 14641932 I-element 7 5449 2.5 7.0 4.8 1.2 5481 chrX 14636451 intron NetA - chrX 14639192 intron NetA - chrX 14641932 intron NetA - chrX_7_14635001 chrX_14635001 RAL-440 2303 chrX 14778019 14778031 chrX 14782835 14782848 Doc 4 4816 8.5 4.0 6.2 0.6 4829 chrX 14778019 intergenic CG5347 + chrX 14780434 intergenic not near genes chrX 14782848 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-440 2304 chrX 14778034 14778063 chrX 14782826 14782838 Doc 10 4806 5.0 3.0 4.0 2.0 4804 chrX 14778034 intergenic CG5347 + chrX 14780436 intergenic not near genes chrX 14782838 intergenic Ag5r2 - chrX_10_14780001 chrX_14780001 RAL-440 2305 chrX 14818777 14818798 chrX 14823983 14824007 copia 7 5206 3.0 5.0 4.0 1.4 5230 chrX 14818777 intron rut - chrX 14821392 intron rut - chrX 14824007 intron rut - chrX_7_14820001 chrX_14820001 RAL-440 2306 chrX 14897830 14897853 chrX 14897901 14897957 7 95 1.5 3.0 2.2 2.2 127 chrX 14897830 intron Flo2 + chrX 14897894 intron Flo2 + chrX 14897957 intron Flo2 + chrX_7_14895001 chrX_14895001 RAL-440 2307 chrX 14936843 14936888 chrX 14946115 14946162 roo 9 9274 2.0 2.0 2.0 3.0 9319 chrX 14936843 intron pdgy - chrX 14941502 intron pdgy - chrX 14946162 intron pdgy - chrX_9_14940001 chrX_14940001 RAL-440 2308 chrX 14952438 14952463 chrX 14952604 14952610 8 171 7.0 3.5 5.2 1.3 172 chrX 14952438 intron,3` UTR pdgy -,CR44831 - chrX 14952524 intron,3` UTR pdgy -,CR44831 - chrX 14952610 intron,3` UTR pdgy -,CR44831 - chrX_8_14950001 chrX_14950001 RAL-440 2309 chrX 15248269 15248291 chrX 15248348 15248384 5 87 1.0 3.0 2.0 1.7 115 chrX 15248269 intergenic not near genes chrX 15248326 intergenic not near genes chrX 15248384 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-440 2310 chrX 15369824 15369860 chrX 15369918 15369963 7 95 3.5 4.0 3.8 1.5 139 chrX 15369824 intron acj6 - chrX 15369894 intron acj6 - chrX 15369963 intron acj6 - chrX_7_15365001 chrX_15365001 RAL-440 2311 chrX 15413050 15413086 chrX 15417358 15417371 Juan 7 4303 4.5 6.5 5.5 1.1 4321 chrX 15413050 intron Cngl - chrX 15415210 intron Cngl - chrX 15417371 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-440 2312 chrX 15435690 15435697 chrX 15436127 15436143 rover 4 446 0.0 5.5 2.8 1.1 453 chrX 15435690 intron Cngl - chrX 15435916 intron Cngl - chrX 15436143 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-440 2313 chrX 15519785 15519831 chrX 15519876 15519912 9 84 4.0 1.0 2.5 2.6 127 chrX 15519785 intron Ac13E - chrX 15519848 intron Ac13E - chrX 15519912 intron Ac13E - chrX_9_15515001 chrX_15515001 RAL-440 2314 chrX 15678016 15678064 chrX 15678113 15678144 6 89 4.5 5.0 4.8 1.0 128 chrX 15678016 intergenic CG12708 + chrX 15678080 intergenic CG12708 + chrX 15678144 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-440 2315 chrX 15681406 15681428 chrX 15681477 15681509 6 86 3.0 1.5 2.2 1.9 103 chrX 15681406 intergenic not near genes chrX 15681458 intergenic not near genes chrX 15681509 intergenic not near genes chrX_6_15680001 chrX_15680001 RAL-440 2316 chrX 16156694 16156731 chrX 16156805 16156856 4 112 2.0 6.0 4.0 0.8 162 chrX 16156694 intergenic not near genes chrX 16156775 intergenic not near genes chrX 16156856 intergenic not near genes chrX_4_16155001 chrX_16155001 RAL-440 2317 chrX 16492642 16492670 chrX 16498223 16498257 mdg3 9 5590 4.0 6.0 5.0 1.5 5615 chrX 16492642 intron para - chrX 16495450 intron para - chrX 16498257 intron para - chrX_9_16495001 chrX_16495001 RAL-440 2318 chrX 16570861 16570891 chrX 16570951 16570979 7 91 4.5 1.5 3.0 1.8 118 chrX 16570861 intron CanA-14F - chrX 16570920 intron CanA-14F - chrX 16570979 intron CanA-14F - chrX_7_16570001 chrX_16570001 RAL-440 2319 chrX 17011969 17011999 chrX 17012052 17012088 8 84 3.0 6.0 4.5 1.5 119 chrX 17011969 intron CG45002 - chrX 17012028 intron CG45002 - chrX 17012088 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-440 2320 chrX 17057926 17057963 chrX 17058176 17058222 pogo 5 256 2.5 2.0 2.2 1.6 296 chrX 17057926 intron CG45002 - chrX 17058074 intron CG45002 - chrX 17058222 intron CG45002 - chrX_5_17055001 chrX_17055001 RAL-440 2321 chrX 17063187 17063208 chrX 17063278 17063300 5 95 1.5 1.5 1.5 2.0 113 chrX 17063187 intron CG45002 - chrX 17063244 intron CG45002 - chrX 17063300 intron CG45002 - chrX_5_17060001 chrX_17060001 RAL-440 2322 chrX 17195198 17195227 chrX 17200289 17200326 flea 8 5098 1.5 3.0 2.2 2.5 5128 chrX 17195198 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200326 3` UTR baz + chrX_8_17195001 chrX_17195001 RAL-440 2323 chrX 17205847 17205859 chrX 17205950 17205963 4 105 1.5 4.0 2.8 1.1 116 chrX 17205847 intergenic not near genes chrX 17205905 intergenic not near genes chrX 17205963 intergenic CG32564 + chrX_4_17205001 chrX_17205001 RAL-440 2324 chrX 17221824 17221840 chrX 17221915 17221942 6 99 1.5 2.0 1.8 2.1 118 chrX 17221824 intron CG5172 + chrX 17221883 intron CG5172 + chrX 17221942 intron CG5172 + chrX_6_17220001 chrX_17220001 RAL-440 2325 chrX 17282867 17282905 chrX 17282953 17282980 9 84 3.5 1.0 2.2 2.8 113 chrX 17282867 intron CG5445 + chrX 17282924 5` UTR CG5445 + chrX 17282980 intron CG5445 + chrX_9_17280001 chrX_17280001 RAL-440 2326 chrX 17352576 17352619 chrX 17352690 17352736 9 117 0.0 1.5 0.8 5.0 160 chrX 17352576 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352736 intergenic not near genes chrX_9_17350001 chrX_17350001 RAL-440 2327 chrX 17462762 17462795 chrX 17462918 17462948 10 156 4.0 1.0 2.5 2.9 186 chrX 17462762 intron CG43658 - chrX 17462855 intron CG43658 - chrX 17462948 intron CG43658 - chrX_10_17460001 chrX_17460001 RAL-440 2328 chrX 17538487 17538496 chrX 17538794 17538810 5 308 10.5 4.5 7.5 0.6 323 chrX 17538487 intron CG43658 - chrX 17538648 intron CG43658 - chrX 17538810 intron CG43658 - chrX_5_17535001 chrX_17535001 RAL-440 2329 chrX 17538504 17538530 chrX 17538791 17538805 10 299 4.5 3.5 4.0 2.0 301 chrX 17538504 intron CG43658 - chrX 17538654 intron CG43658 - chrX 17538805 intron CG43658 - chrX_10_17535001 chrX_17535001 RAL-440 2330 chrX 17657091 17657103 chrX 17657175 17657203 5 92 2.0 1.5 1.8 1.8 112 chrX 17657091 intergenic IntS2 -,beta-Spec + chrX 17657147 intergenic beta-Spec +,IntS2 - chrX 17657203 intergenic beta-Spec +,IntS2 - chrX_5_17655001 chrX_17655001 RAL-440 2331 chrX 17680903 17680924 chrX 17680981 17681001 7 84 4.0 8.0 6.0 1.0 98 chrX 17680903 intron chas - chrX 17680952 intron chas - chrX 17681001 intron chas - chrX_7_17680001 chrX_17680001 RAL-440 2332 chrX 17716566 17716604 chrX 17716672 17716704 4 105 1.5 2.5 2.0 1.3 138 chrX 17716566 intron CG42684 + chrX 17716635 intron CG42684 + chrX 17716704 intron CG42684 + chrX_4_17715001 chrX_17715001 RAL-440 2333 chrX 17743581 17743632 chrX 17743686 17743727 11 94 5.0 4.0 4.5 2.0 146 chrX 17743581 intron CG42684 + chrX 17743654 intron CG42684 + chrX 17743727 intron CG42684 + chrX_11_17740001 chrX_17740001 RAL-440 2334 chrX 17838097 17838115 chrX 17838174 17838194 5 80 6.0 1.0 3.5 1.1 97 chrX 17838097 intron CG6398 + chrX 17838146 intron CG6398 + chrX 17838194 intron CG6398 + chrX_5_17835001 chrX_17835001 RAL-440 2335 chrX 17911856 17911894 chrX 17911952 17911993 8 97 2.0 3.5 2.8 2.1 137 chrX 17911856 intron CG6847 + chrX 17911924 intron CG6847 + chrX 17911993 intron CG6847 + chrX_8_17910001 chrX_17910001 RAL-440 2336 chrX 17968892 17968925 chrX 17969021 17969038 5 128 2.0 3.0 2.5 1.4 146 chrX 17968892 intron Sh - chrX 17968965 intron Sh - chrX 17969038 intron Sh - chrX_5_17965001 chrX_17965001 RAL-440 2337 chrX 18005361 18005374 chrX 18005517 18005548 5 179 0.5 2.0 1.2 2.3 187 chrX 18005361 intron Sh - chrX 18005454 intron Sh - chrX 18005548 intron Sh - chrX_5_18005001 chrX_18005001 RAL-440 2338 chrX 18126587 18126802 chrX 18126729 18126898 8 110 5.0 1.0 3.0 2.0 311 chrX 18126587 intron CG32553 - chrX 18126742 intron CG32553 - chrX 18126898 intron CG32553 - chrX_8_18125001 chrX_18125001 RAL-440 2339 chrX 18194057 18194097 chrX 18194599 18194645 BS 15 543 8.0 2.5 5.2 2.4 588 chrX 18194057 intron Frq2 + chrX 18194351 intron Frq2 + chrX 18194645 intron Frq2 + chrX_15_18190001 chrX_18190001 RAL-440 2340 chrX 18218022 18218067 chrX 18218157 18218204 7 132 1.0 3.0 2.0 2.3 182 chrX 18218022 intron CG33639 - chrX 18218113 intron CG33639 - chrX 18218204 intron CG33639 - chrX_7_18215001 chrX_18215001 RAL-440 2341 chrX 18427361 18427408 chrX 18427792 18427832 13 424 4.0 0.5 2.2 4.1 471 chrX 18427361 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427832 intergenic not near genes chrX_13_18425001 chrX_18425001 RAL-440 2342 chrX 18429481 18429524 chrX 18434812 18434847 Transpac 5 5328 2.0 4.0 3.0 1.2 5366 chrX 18429481 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434847 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-440 2343 chrX 18467212 18467257 chrX 18467389 18467429 16 173 2.5 6.5 4.5 2.9 217 chrX 18467212 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467429 intron CG32547 - chrX_16_18465001 chrX_18465001 RAL-440 2344 chrX 18558757 18558805 chrX 18558859 18558906 18 98 2.0 2.0 2.0 6.0 149 chrX 18558757 intron Bx + chrX 18558832 intron Bx + chrX 18558906 intron Bx + chrX_18_18555001 chrX_18555001 RAL-440 2345 chrX 18645010 18645047 chrX 18645117 18645152 6 110 4.5 2.0 3.2 1.4 142 chrX 18645010 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645152 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-440 2346 chrX 18698833 18698855 chrX 18698969 18698977 7 130 8.0 6.5 7.2 0.9 144 chrX 18698833 intergenic not near genes chrX 18698905 intergenic not near genes chrX 18698977 intergenic not near genes chrX_7_18695001 chrX_18695001 RAL-440 2347 chrX 18896504 18896549 chrX 18896634 18896669 6 126 3.5 5.0 4.2 1.2 165 chrX 18896504 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896669 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-440 2348 chrX 18926533 18926543 chrX 18926645 18926645 4 110 1.5 0.0 0.8 2.2 112 chrX 18926533 intergenic not near genes chrX 18926589 intergenic not near genes chrX 18926645 intergenic not near genes chrX_4_18925001 chrX_18925001 RAL-440 2349 chrX 18957054 18957085 chrX 18965735 18965766 roo 4 8681 2.5 4.5 3.5 0.9 8712 chrX 18957054 intron CG43759 + chrX 18961410 intron CG43759 + chrX 18965766 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-440 2350 chrX 19047519 19047522 chrX 19047599 19047622 4 97 7.5 5.0 6.2 0.6 103 chrX 19047519 intergenic not near genes chrX 19047570 intergenic not near genes chrX 19047622 intergenic not near genes chrX_4_19045001 chrX_19045001 RAL-440 2351 chrX 19060394 19060434 chrX 19065197 19065235 Doc 9 4801 4.0 4.5 4.2 1.7 4841 chrX 19060394 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065235 intron CG14190 + chrX_9_19060001 chrX_19060001 RAL-440 2352 chrX 19073680 19073697 chrX 19073775 19073804 7 98 4.0 3.5 3.8 1.5 124 chrX 19073680 intergenic not near genes chrX 19073742 intergenic not near genes chrX 19073804 intergenic not near genes chrX_7_19070001 chrX_19070001 RAL-440 2353 chrX 19080324 19080354 chrX 19080430 19080474 11 122 2.5 2.0 2.2 3.4 150 chrX 19080324 intergenic not near genes chrX 19080399 intergenic not near genes chrX 19080474 intergenic not near genes chrX_11_19080001 chrX_19080001 RAL-440 2354 chrX 19084108 19084123 chrX 19084219 19084244 5 120 0.0 0.5 0.2 4.2 136 chrX 19084108 intergenic CR45503 + chrX 19084176 intergenic CR45503 + chrX 19084244 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-440 2355 chrX 19097519 19097541 chrX 19097606 19097620 7 89 3.5 3.0 3.2 1.7 101 chrX 19097519 intergenic not near genes chrX 19097570 intergenic not near genes chrX 19097620 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-440 2356 chrX 19098755 19098773 chrX 19098853 19098862 4 96 2.5 0.5 1.5 1.6 107 chrX 19098755 intergenic not near genes chrX 19098808 intergenic not near genes chrX 19098862 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-440 2357 chrX 19101193 19101207 chrX 19101328 19101335 5 132 1.0 0.5 0.8 2.8 142 chrX 19101193 intergenic not near genes chrX 19101264 intergenic not near genes chrX 19101335 intergenic not near genes chrX_5_19100001 chrX_19100001 RAL-440 2358 chrX 19109117 19109135 chrX 19109303 19109323 7 183 0.0 2.5 1.2 3.2 206 chrX 19109117 intergenic not near genes chrX 19109220 intergenic not near genes chrX 19109323 intergenic not near genes chrX_7_19105001 chrX_19105001 RAL-440 2359 chrX 19124423 19124458 chrX 19124531 19124549 5 99 3.5 1.5 2.5 1.4 126 chrX 19124423 intergenic CG15882 - chrX 19124486 intergenic CG15882 - chrX 19124549 intergenic CG15882 -,tgy - chrX_5_19120001 chrX_19120001 RAL-440 2360 chrX 19125676 19125694 chrX 19125761 19125763 4 80 4.5 4.5 4.5 0.7 87 chrX 19125676 intron tgy - chrX 19125720 intron tgy - chrX 19125763 intron tgy - chrX_4_19125001 chrX_19125001 RAL-440 2361 chrX 19147904 19147942 chrX 19148000 19148009 5 85 2.5 3.0 2.8 1.3 105 chrX 19147904 intron RhoGAP18B - chrX 19147956 intron RhoGAP18B - chrX 19148009 intron RhoGAP18B - chrX_5_19145001 chrX_19145001 RAL-440 2362 chrX 19180070 19180092 chrX 19180157 19180173 5 95 2.0 1.0 1.5 2.0 103 chrX 19180070 intergenic CG7453 +,CG7556 - chrX 19180122 intergenic CG7453 +,CG7556 - chrX 19180173 5` UTR CG7453 + chrX_5_19180001 chrX_19180001 RAL-440 2363 chrX 19181995 19182044 chrX 19182126 19182157 8 126 0.0 0.5 0.2 6.7 162 chrX 19181995 3` UTR CG7453 + chrX 19182076 intergenic CG7453 + chrX 19182157 intergenic CG7453 + chrX_8_19180001 chrX_19180001 RAL-440 2364 chrX 19356982 19357015 chrX 19358434 19358435 NOF 5 1445 4.5 0.0 2.2 1.6 1453 chrX 19356982 intron kek5 + chrX 19357708 intron kek5 + chrX 19358435 intron kek5 + chrX_5_19355001 chrX_19355001 RAL-440 2365 chrX 19380138 19380188 chrX 19380396 19380433 pogo 10 255 6.5 2.5 4.5 1.8 295 chrX 19380138 intron kek5 + chrX 19380286 intron kek5 + chrX 19380433 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-440 2366 chrX 19472130 19472150 chrX 19472698 19472739 jockey 8 575 2.0 6.0 4.0 1.6 609 chrX 19472130 intergenic kek5 + chrX 19472434 intergenic not near genes chrX 19472739 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-440 2367 chrX 19472152 19472160 chrX 19472697 19472705 jockey 5 565 2.0 5.5 3.8 1.0 553 chrX 19472152 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472705 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-440 2368 chrX 19541418 19541443 chrX 19541515 19541538 4 97 0.5 1.0 0.8 2.2 120 chrX 19541418 intron CG32532 - chrX 19541478 intron CG32532 - chrX 19541538 intron CG32532 - chrX_4_19540001 chrX_19540001 RAL-440 2369 chrX 19593936 19593977 chrX 19594032 19594075 12 93 2.0 6.0 4.0 2.4 139 chrX 19593936 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594075 intron CG14205 + chrX_12_19590001 chrX_19590001 RAL-440 2370 chrX 19710069 19710104 chrX 19711859 19711894 S-element 13 1794 3.0 5.0 4.0 2.6 1825 chrX 19710069 intron meso18E - chrX 19710982 intron meso18E - chrX 19711894 intron meso18E - chrX_13_19710001 chrX_19710001 RAL-440 2371 chrX 19787259 19787271 chrX 19787361 19787373 4 102 4.5 0.0 2.2 1.2 114 chrX 19787259 3` UTR CR44885 - chrX 19787316 intron CR44885 - chrX 19787373 intron CR44885 - chrX_4_19785001 chrX_19785001 RAL-440 2372 chrX 19881439 19881485 chrX 19881535 19881574 13 89 3.0 1.5 2.2 4.1 135 chrX 19881439 intron Hers + chrX 19881506 intron Hers + chrX 19881574 intron Hers + chrX_13_19880001 chrX_19880001 RAL-440 2373 chrX 19897379 19897414 chrX 19897466 19897507 10 91 5.0 5.0 5.0 1.7 128 chrX 19897379 intron Hers + chrX 19897443 intron Hers + chrX 19897507 intron Hers + chrX_10_19895001 chrX_19895001 RAL-440 2374 chrX 19983849 19983861 chrX 19983949 19983961 4 100 0.5 6.5 3.5 0.9 112 chrX 19983849 intergenic not near genes chrX 19983905 intergenic not near genes chrX 19983961 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-440 2375 chrX 19983862 19983890 chrX 19983943 19983972 5 88 0.5 5.0 2.8 1.3 110 chrX 19983862 intergenic not near genes chrX 19983917 intergenic not near genes chrX 19983972 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-440 2376 chrX 20052774 20052804 chrX 20052878 20052908 7 101 3.0 0.5 1.8 2.5 134 chrX 20052774 intron Dop2R - chrX 20052841 intron Dop2R - chrX 20052908 intron Dop2R - chrX_7_20050001 chrX_20050001 RAL-440 2377 chrX 20065799 20065826 chrX 20065886 20065921 9 90 4.0 3.0 3.5 2.0 122 chrX 20065799 intergenic not near genes chrX 20065860 intergenic not near genes chrX 20065921 intergenic not near genes chrX_9_20065001 chrX_20065001 RAL-440 2378 chrX 20262869 20262917 chrX 20262991 20263012 13 116 2.0 2.0 2.0 4.3 143 chrX 20262869 intergenic not near genes chrX 20262940 intergenic not near genes chrX 20263012 intergenic not near genes chrX_13_20260001 chrX_20260001 RAL-440 2379 chrX 20312885 20312908 chrX 20312959 20313000 11 85 4.0 5.5 4.8 1.9 115 chrX 20312885 intron CG1504 - chrX 20312942 intron CG1504 - chrX 20313000 intron CG1504 - chrX_11_20310001 chrX_20310001 RAL-440 2380 chrX 20328147 20328158 chrX 20328198 20328228 4 61 1.0 4.5 2.8 1.1 81 chrX 20328147 intron,exon CG1504 -,CG1631 + chrX 20328188 intron,exon CG1504 -,CG1631 + chrX 20328228 intron,3` UTR CG1504 -,CG1631 + chrX_4_20325001 chrX_20325001 RAL-440 2381 chrX 20359134 20359160 chrX 20359222 20359258 7 85 3.5 2.0 2.8 1.8 124 chrX 20359134 intergenic not near genes chrX 20359196 intergenic not near genes chrX 20359258 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-440 2382 chrX 20359161 20359170 chrX 20359215 20359263 7 81 4.0 2.0 3.0 1.8 102 chrX 20359161 intergenic not near genes chrX 20359212 intergenic not near genes chrX 20359263 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-440 2383 chrX 20369318 20369342 chrX 20369405 20369436 8 92 2.5 2.0 2.2 2.5 118 chrX 20369318 intergenic not near genes chrX 20369377 intergenic not near genes chrX 20369436 intergenic not near genes chrX_8_20365001 chrX_20365001 RAL-440 2384 chrX 20377333 20377347 chrX 20378805 20378805 hobo 7 1476 3.0 2.5 2.8 1.8 1472 chrX 20377333 intergenic not near genes chrX 20378069 intergenic not near genes chrX 20378805 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-440 2385 chrX 20383307 20383343 chrX 20383442 20383487 9 132 1.0 3.5 2.2 2.8 180 chrX 20383307 intergenic not near genes chrX 20383397 intergenic not near genes chrX 20383487 intergenic not near genes chrX_9_20380001 chrX_20380001 RAL-440 2386 chrX 20383871 20383906 chrX 20383957 20383995 4 87 1.5 3.0 2.2 1.2 124 chrX 20383871 intergenic not near genes chrX 20383933 intergenic not near genes chrX 20383995 intergenic not near genes chrX_4_20380001 chrX_20380001 RAL-440 2387 chrX 20384198 20384227 chrX 20384314 20384346 8 117 1.5 1.5 1.5 3.2 148 chrX 20384198 intergenic not near genes chrX 20384272 intergenic not near genes chrX 20384346 intergenic not near genes chrX_8_20380001 chrX_20380001 RAL-440 2388 chrX 20448427 20448465 chrX 20448521 20448568 5 95 1.0 0.0 0.5 3.3 141 chrX 20448427 intergenic not near genes chrX 20448498 intergenic not near genes chrX 20448568 intergenic not near genes chrX_5_20445001 chrX_20445001 RAL-440 2389 chrX 20459639 20459664 chrX 20459711 20459730 6 71 6.0 1.5 3.8 1.2 91 chrX 20459639 intron CG32506 + chrX 20459684 intron CG32506 + chrX 20459730 intron CG32506 + chrX_6_20455001 chrX_20455001 RAL-440 2390 chrX 20468018 20468036 chrX 20468105 20468105 4 92 1.5 0.0 0.8 2.2 87 chrX 20468018 intron GstT3 + chrX 20468062 intron GstT3 + chrX 20468105 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-440 2391 chrX 20504116 20504138 chrX 20505657 20505675 transib2 6 1535 4.0 5.5 4.8 1.0 1559 chrX 20504116 intron RhoGAP19D - chrX 20504896 intron RhoGAP19D - chrX 20505675 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-440 2392 chrX 20578073 20578087 chrX 20578153 20578181 5 85 4.0 2.0 3.0 1.2 108 chrX 20578073 intergenic not near genes chrX 20578127 intergenic not near genes chrX 20578181 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-440 2393 chrX 20635419 20635447 chrX 20635599 20635609 5 176 1.0 4.5 2.8 1.3 190 chrX 20635419 intergenic not near genes chrX 20635514 intergenic not near genes chrX 20635609 intergenic not near genes chrX_5_20635001 chrX_20635001 RAL-440 2394 chrX 20719193 20719199 chrX 20719533 20719534 4 345 2.5 2.0 2.2 1.2 341 chrX 20719193 intergenic not near genes chrX 20719364 intergenic not near genes chrX 20719534 intergenic not near genes chrX_4_20715001 chrX_20715001 RAL-440 2395 chrX 20836716 20836757 chrX 20844338 20844355 roo 7 7615 0.5 4.0 2.2 2.2 7639 chrX 20836716 intron shakB - chrX 20840536 intron shakB - chrX 20844355 intron shakB - chrX_7_20840001 chrX_20840001 RAL-440 2396 chrX 20940715 20940749 chrX 20942188 20942217 hobo 10 1478 5.0 2.0 3.5 2.2 1502 chrX 20940715 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942217 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-440 2397 chrX 20947661 20947683 chrX 20948514 20948523 4 850 1.0 5.5 3.2 1.0 862 chrX 20947661 intergenic not near genes chrX 20948092 intergenic not near genes chrX 20948523 intergenic not near genes chrX_4_20945001 chrX_20945001 RAL-440 2398 chrX 20955845 20955891 chrX 20956009 20956049 14 164 2.0 1.5 1.8 5.0 204 chrX 20955845 intergenic not near genes chrX 20955947 intergenic not near genes chrX 20956049 intergenic not near genes chrX_14_20955001 chrX_20955001 RAL-440 2399 chrX 20956982 20956995 chrX 20962427 20962443 I-element 5 5451 2.5 2.5 2.5 1.4 5461 chrX 20956982 intergenic not near genes chrX 20959712 intergenic not near genes chrX 20962443 intergenic Ser6 - chrX_5_20955001 chrX_20955001 RAL-440 2400 chrX 21022249 21022262 chrX 21022429 21022440 5 181 11.5 3.5 7.5 0.6 191 chrX 21022249 intergenic not near genes chrX 21022344 intergenic not near genes chrX 21022440 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-440 2401 chrX 21022263 21022268 chrX 21022424 21022457 4 179 12.0 3.0 7.5 0.5 194 chrX 21022263 intergenic not near genes chrX 21022360 intergenic not near genes chrX 21022457 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-440 2402 chrX 21055686 21055710 chrX 21055770 21055803 7 92 4.0 2.5 3.2 1.7 117 chrX 21055686 intron bves + chrX 21055744 intron bves + chrX 21055803 intron bves + chrX_7_21055001 chrX_21055001 RAL-440 2403 chrX 21061874 21061897 chrX 21062376 21062402 roo 4 504 2.5 2.5 2.5 1.1 528 chrX 21061874 intron bves + chrX 21062138 intron bves + chrX 21062402 intron,3` UTR bves +,CG32512 - chrX_4_21060001 chrX_21060001 RAL-440 2404 chrX 21076322 21076355 chrX 21076407 21076454 7 85 2.5 0.0 1.2 3.2 132 chrX 21076322 intron bves + chrX 21076388 intron bves + chrX 21076454 intron bves + chrX_7_21075001 chrX_21075001 RAL-440 2405 chrX 21086122 21086164 chrX 21087158 21087201 jockey 14 1038 1.5 4.5 3.0 3.5 1079 chrX 21086122 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087201 intergenic not near genes chrX_14_21085001 chrX_21085001 RAL-440 2406 chrX 21088039 21088063 chrX 21088177 21088215 6 141 4.0 1.0 2.5 1.7 176 chrX 21088039 intergenic not near genes chrX 21088127 intergenic not near genes chrX 21088215 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-440 2407 chrX 21197064 21197071 chrX 21197145 21197156 4 82 2.5 3.0 2.8 1.1 92 chrX 21197064 intergenic not near genes chrX 21197110 intergenic not near genes chrX 21197156 intergenic not near genes chrX_4_21195001 chrX_21195001 RAL-440 2408 chrX 21197073 21197089 chrX 21197141 21197174 11 82 2.0 2.5 2.2 3.4 101 chrX 21197073 intergenic not near genes chrX 21197124 intergenic not near genes chrX 21197174 intergenic not near genes chrX_11_21195001 chrX_21195001 RAL-440 2409 chrX 21268076 21268079 chrX 21268152 21268170 4 88 5.5 4.5 5.0 0.7 94 chrX 21268076 intron CG32521 - chrX 21268123 intron CG32521 - chrX 21268170 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-440 2410 chrX 21328103 21328136 chrX 21328230 21328252 4 125 1.5 1.5 1.5 1.6 149 chrX 21328103 3` UTR CG1486 + chrX 21328178 intergenic CG1486 +,tty - chrX 21328252 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-440 2411 chrX 21455200 21455237 chrX 21455394 21455432 4 198 1.5 0.5 1.0 2.0 232 chrX 21455200 intron CG42343 - chrX 21455316 intron CG42343 - chrX 21455432 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-440 2412 chrX 21458694 21458728 chrX 21464130 21464163 Ivk 8 5440 0.5 5.0 2.8 2.1 5469 chrX 21458694 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464163 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-440 2413 chrX 21474390 21474434 chrX 21474776 21474819 1731 10 380 3.5 5.5 4.5 1.8 429 chrX 21474390 intergenic not near genes chrX 21474604 intergenic not near genes chrX 21474819 intergenic not near genes chrX_10_21470001 chrX_21470001 RAL-440 2414 chrX 21500548 21500589 chrX 21500763 21500771 8 208 0.0 3.0 1.5 3.2 223 chrX 21500548 intron CR45082 - chrX 21500660 intron CR45082 - chrX 21500771 intron CR45082 - chrX_8_21500001 chrX_21500001 RAL-440 2415 chrX 21565407 21565438 chrX 21565492 21565536 7 95 2.5 2.0 2.2 2.2 129 chrX 21565407 intergenic not near genes chrX 21565472 intergenic not near genes chrX 21565536 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-440 2416 chrX 21573890 21573912 chrX 21573983 21574007 4 90 2.0 0.5 1.2 1.8 117 chrX 21573890 intergenic not near genes chrX 21573948 intergenic not near genes chrX 21574007 intergenic not near genes chrX_4_21570001 chrX_21570001 RAL-440 2417 chrX 21575539 21575559 chrX 21575625 21575644 6 92 3.0 4.5 3.8 1.2 105 chrX 21575539 intergenic not near genes chrX 21575592 intergenic not near genes chrX 21575644 intergenic not near genes chrX_6_21575001 chrX_21575001 RAL-440 2418 chrX 21668241 21668290 chrX 21668346 21668380 8 98 30.5 21.5 26.0 0.3 139 chrX 21668241 intergenic not near genes chrX 21668310 intergenic not near genes chrX 21668380 intergenic not near genes chrX_8_21665001 chrX_21665001 RAL-440 2419 chrX 22522632 22522649 chrX 22525449 22525489 NOF 5 2833 6.0 3.0 4.5 0.9 2857 chrX 22522632 intron CG17600 + chrX 22524060 intron CG17600 + chrX 22525489 intron CG17600 + chrX_5_22520001 chrX_22520001 RAL-440 2420 chrX 22564563 22564565 chrX 22575116 22575135 jockey 5 10564 18.5 14.0 16.2 0.3 10572 chrX 22564563 intergenic not near genes chrX 22569849 intergenic not near genes chrX 22575135 intergenic not near genes chrX_5_22565001 chrX_22565001 RAL-440 2421 chrX 22606698 22606743 chrX 22610685 22610730 9 3992 21.0 22.0 21.5 0.4 4032 chrX 22606698 intron Cda4 - chrX 22608714 intron Cda4 - chrX 22610730 intron Cda4 - chrX_9_22605001 chrX_22605001 RAL-440 2422 chrX 22660574 22660604 chrX 22660664 22660707 4 96 3.5 0.0 1.8 1.4 133 chrX 22660574 intron CR44997 + chrX 22660640 intron CR44997 + chrX 22660707 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-440 2423 chrX 22697501 22697520 chrX 22701806 22701824 Juan 8 4308 2.0 4.5 3.2 1.9 4323 chrX 22697501 intron CR44997 + chrX 22699662 intron CR44997 + chrX 22701824 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-440 2424 chrX 22731904 22731947 chrX 22732010 22732030 7 96 3.0 6.5 4.8 1.2 126 chrX 22731904 intron CR44997 + chrX 22731967 intron CR44997 + chrX 22732030 intron CR44997 + chrX_7_22730001 chrX_22730001 RAL-440 2425 chrX 22752471 22752507 chrX 22752588 22752609 8 103 3.0 3.5 3.2 1.9 138 chrX 22752471 intron CR44997 + chrX 22752540 intron CR44997 + chrX 22752609 intron CR44997 + chrX_8_22750001 chrX_22750001 RAL-440 2426 chrX 22771499 22771536 chrX 22774795 22774821 297 7 3302 4.5 2.5 3.5 1.6 3322 chrX 22771499 intron CR44997 + chrX 22773160 intron CR44997 + chrX 22774821 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-440 2427 chrX 22820952 22820985 chrX 22821154 22821189 5 201 1.0 3.0 2.0 1.7 237 chrX 22820952 intergenic not near genes chrX 22821070 intergenic not near genes chrX 22821189 intergenic not near genes chrX_5_22820001 chrX_22820001 RAL-440 2428 chrX 22867971 22868000 chrX 22868098 22868118 13 124 2.0 0.0 1.0 6.5 147 chrX 22867971 exon CG42346 + chrX 22868044 intron CG42346 + chrX 22868118 intron CG42346 + chrX_13_22865001 chrX_22865001 RAL-440 2429 chrX 22870874 22870897 chrX 22870964 22870998 7 94 3.5 4.5 4.0 1.4 124 chrX 22870874 intron,3` UTR CG42346 +,CR43656 - chrX 22870936 intron,3` UTR CG42346 +,CR43656 - chrX 22870998 intron,3` UTR CG42346 +,CR43656 - chrX_7_22870001 chrX_22870001 RAL-440 2430 chrX 22908987 22908990 chrX 22913220 22913229 Burdock 5 4235 3.5 9.5 6.5 0.7 4242 chrX 22908987 intergenic not near genes chrX 22911108 intergenic not near genes chrX 22913229 intergenic not near genes chrX_5_22910001 chrX_22910001 RAL-440 2431 chrX 22987083 22987133 chrX 22989762 22989799 Burdock 6 2674 1.5 1.0 1.2 2.7 2716 chrX 22987083 intron,intron stnA -,stnB - chrX 22988441 intron,intron stnA -,stnB - chrX 22989799 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-440 2432 chrX 22996305 22996330 chrX 23003542 23003580 roo 8 7246 2.0 3.5 2.8 2.1 7275 chrX 22996305 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003580 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-440