SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47456 47481 chr2L 52566 52606 jockey 6 5117 5.5 8.5 7.0 0.8 5150 chr2L 47456 intron Cda5 - chr2L 50031 intron Cda5 - chr2L 52606 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-439 2 chr2L 106947 106987 chr2L 107043 107081 11 97 4.0 2.0 3.0 2.8 134 chr2L 106947 5` UTR Sam-S + chr2L 107014 intron Sam-S + chr2L 107081 intron Sam-S + chr2L_11_105001 chr2L_105001 RAL-439 3 chr2L 263299 263330 chr2L 263455 263496 6 159 2.0 6.5 4.2 1.2 197 chr2L 263299 intron,3` UTR CG3645 -,CG17075 - chr2L 263398 intron,3` UTR CG3645 -,CG17075 - chr2L 263496 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-439 4 chr2L 313456 313497 chr2L 313575 313616 6 112 1.0 3.5 2.2 1.9 160 chr2L 313456 intron Plc21C + chr2L 313536 intron Plc21C + chr2L 313616 intron Plc21C + chr2L_6_310001 chr2L_310001 RAL-439 5 chr2L 407955 407963 chr2L 408045 408064 9 99 10.0 6.5 8.2 1.0 109 chr2L 407955 3` UTR RpI135 + chr2L 408010 intergenic AP-2alpha -,RpI135 + chr2L 408064 3` UTR AP-2alpha - chr2L_9_405001 chr2L_405001 RAL-439 6 chr2L 407969 407972 chr2L 408028 408058 4 87 8.5 4.0 6.2 0.6 89 chr2L 407969 3` UTR RpI135 + chr2L 408014 intergenic AP-2alpha -,RpI135 + chr2L 408058 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-439 7 chr2L 458872 458920 chr2L 458969 459011 15 92 7.5 5.0 6.2 2.1 139 chr2L 458872 intergenic CG4297 -,CG4133 + chr2L 458942 3` UTR CG4297 - chr2L 459011 3` UTR CG4297 - chr2L_15_455001 chr2L_455001 RAL-439 8 chr2L 590313 590342 chr2L 590425 590454 10 109 1.5 4.5 3.0 2.5 141 chr2L 590313 intron Gsc - chr2L 590384 intron Gsc - chr2L 590454 intron Gsc - chr2L_10_590001 chr2L_590001 RAL-439 9 chr2L 666283 666306 chr2L 666356 666372 5 80 2.0 1.0 1.5 2.0 89 chr2L 666283 intron ds - chr2L 666328 intron ds - chr2L 666372 intron ds - chr2L_5_665001 chr2L_665001 RAL-439 10 chr2L 877832 877871 chr2L 877925 877944 6 95 1.0 3.5 2.2 1.9 112 chr2L 877832 3` UTR,exon CG15824 -,ninaA + chr2L 877888 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-439 11 chr2L 922471 922493 chr2L 922545 922552 4 84 4.0 2.5 3.2 1.0 81 chr2L 922471 intergenic CG4341 + chr2L 922512 intergenic CG4341 + chr2L 922552 intergenic CG4341 + chr2L_4_920001 chr2L_920001 RAL-439 12 chr2L 964537 964574 chr2L 964641 964677 10 99 3.5 4.5 4.0 2.0 140 chr2L 964537 intergenic not near genes chr2L 964607 intergenic not near genes chr2L 964677 intergenic not near genes chr2L_10_960001 chr2L_960001 RAL-439 13 chr2L 976879 976897 chr2L 984514 984528 roo 4 7637 10.5 3.5 7.0 0.5 7649 chr2L 976879 intergenic not near genes chr2L 980704 intergenic not near genes chr2L 984528 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-439 14 chr2L 996712 996716 chr2L 1005827 1005831 roo 4 9115 10.5 6.5 8.5 0.4 9119 chr2L 996712 intergenic not near genes chr2L 1001272 intergenic not near genes chr2L 1005831 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-439 15 chr2L 996737 996748 chr2L 1005819 1005863 roo 5 9107 4.5 5.5 5.0 0.8 9126 chr2L 996737 intergenic not near genes chr2L 1001300 intergenic not near genes chr2L 1005863 intergenic not near genes chr2L_5_1000001 chr2L_1000001 RAL-439 16 chr2L 1042583 1042604 chr2L 1042694 1042705 8 108 1.5 0.0 0.8 4.4 122 chr2L 1042583 intron IA-2 - chr2L 1042644 intron IA-2 - chr2L 1042705 intron IA-2 - chr2L_8_1040001 chr2L_1040001 RAL-439 17 chr2L 1156873 1156885 chr2L 1156963 1157010 5 118 3.5 2.0 2.8 1.3 137 chr2L 1156873 intron capt - chr2L 1156942 intron capt - chr2L 1157010 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-439 18 chr2L 1164230 1164283 chr2L 1164336 1164389 13 104 3.5 4.0 3.8 2.7 159 chr2L 1164230 intergenic IntS14 +,CG5080 - chr2L 1164310 intergenic IntS14 +,CG5080 - chr2L 1164389 intergenic IntS14 + chr2L_13_1160001 chr2L_1160001 RAL-439 19 chr2L 1188752 1188797 chr2L 1188849 1188896 7 94 2.0 7.5 4.8 1.2 144 chr2L 1188752 intron CG5001 + chr2L 1188824 intron CG5001 + chr2L 1188896 intron CG5001 + chr2L_7_1185001 chr2L_1185001 RAL-439 20 chr2L 1220113 1220161 chr2L 1227599 1227647 blood 9 7483 4.5 2.5 3.5 2.0 7534 chr2L 1220113 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227647 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-439 21 chr2L 1244391 1244431 chr2L 1244488 1244528 14 96 3.5 4.0 3.8 2.9 137 chr2L 1244391 intergenic not near genes chr2L 1244460 intergenic not near genes chr2L 1244528 intergenic not near genes chr2L_14_1240001 chr2L_1240001 RAL-439 22 chr2L 1261143 1261242 chr2L 1261234 1261333 7 97 0.0 0.0 0.0 7.0 190 chr2L 1261143 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261333 intron robo3 + chr2L_7_1260001 chr2L_1260001 RAL-439 23 chr2L 1301750 1301782 chr2L 1302307 1302341 gypsy 4 557 0.0 10.5 5.2 0.6 591 chr2L 1301750 intergenic not near genes chr2L 1302046 intergenic not near genes chr2L 1302341 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-439 24 chr2L 1322002 1322049 chr2L 1322111 1322158 6 107 3.5 4.5 4.0 1.2 156 chr2L 1322002 intergenic not near genes chr2L 1322080 intergenic not near genes chr2L 1322158 intergenic not near genes chr2L_6_1320001 chr2L_1320001 RAL-439 25 chr2L 1343533 1343560 chr2L 1343721 1343766 12 201 4.0 2.5 3.2 2.9 233 chr2L 1343533 exon CG33922 - chr2L 1343650 intron CG33922 - chr2L 1343766 exon CG33922 - chr2L_12_1340001 chr2L_1340001 RAL-439 26 chr2L 1570690 1570717 chr2L 1573560 1573609 F-element 12 2882 5.5 3.0 4.2 2.3 2919 chr2L 1570690 intron haf + chr2L 1572150 intron haf + chr2L 1573609 intron haf + chr2L_12_1570001 chr2L_1570001 RAL-439 27 chr2L 1590946 1590977 chr2L 1591034 1591073 4 94 4.5 1.5 3.0 1.0 127 chr2L 1590946 intron haf + chr2L 1591010 intron haf + chr2L 1591073 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-439 28 chr2L 1635398 1635430 chr2L 1635533 1635586 9 146 2.0 7.5 4.8 1.6 188 chr2L 1635398 intergenic not near genes chr2L 1635492 intergenic not near genes chr2L 1635586 intergenic not near genes chr2L_9_1635001 chr2L_1635001 RAL-439 29 chr2L 1678957 1678994 chr2L 1686442 1686462 blood 14 7479 8.5 7.5 8.0 1.6 7505 chr2L 1678957 intron chinmo + chr2L 1682710 intron chinmo + chr2L 1686462 intron chinmo + chr2L_14_1680001 chr2L_1680001 RAL-439 30 chr2L 1957067 1957088 chr2L 1957164 1957187 6 99 3.5 2.0 2.8 1.6 120 chr2L 1957067 intron erm - chr2L 1957127 intron erm - chr2L 1957187 intron erm - chr2L_6_1955001 chr2L_1955001 RAL-439 31 chr2L 2112109 2112144 chr2L 2119776 2119776 opus 5 7657 0.0 1.5 0.8 2.8 7667 chr2L 2112109 intergenic not near genes chr2L 2115942 intergenic not near genes chr2L 2119776 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-439 32 chr2L 2262295 2262334 chr2L 2262392 2262400 5 88 3.5 1.5 2.5 1.4 105 chr2L 2262295 intergenic not near genes chr2L 2262348 intergenic not near genes chr2L 2262400 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-439 33 chr2L 2311073 2311091 chr2L 2311171 2311207 11 110 1.5 5.0 3.2 2.6 134 chr2L 2311073 intron CG9967 - chr2L 2311140 intron CG9967 - chr2L 2311207 intron CG9967 - chr2L_11_2310001 chr2L_2310001 RAL-439 34 chr2L 2331604 2331618 chr2L 2331700 2331707 6 93 8.0 2.5 5.2 1.0 103 chr2L 2331604 intron,intron CG9967 -,eys + chr2L 2331656 intron,intron CG9967 -,eys + chr2L 2331707 intron,intron CG9967 -,eys + chr2L_6_2330001 chr2L_2330001 RAL-439 35 chr2L 2337338 2337371 chr2L 2337439 2337442 12 99 2.5 1.5 2.0 4.0 104 chr2L 2337338 intron,intron CG9967 -,eys + chr2L 2337390 intron,intron CG9967 -,eys + chr2L 2337442 intron,intron CG9967 -,eys + chr2L_12_2335001 chr2L_2335001 RAL-439 36 chr2L 2392138 2392156 chr2L 2392268 2392285 5 130 14.0 2.5 8.2 0.5 147 chr2L 2392138 intron VGlut + chr2L 2392212 intron VGlut + chr2L 2392285 intron VGlut + chr2L_5_2390001 chr2L_2390001 RAL-439 37 chr2L 2427361 2427401 chr2L 2427467 2427507 7 105 4.5 3.5 4.0 1.4 146 chr2L 2427361 3` UTR CR44912 - chr2L 2427434 3` UTR CR44912 - chr2L 2427507 3` UTR CR44912 - chr2L_7_2425001 chr2L_2425001 RAL-439 38 chr2L 2475671 2475689 chr2L 2475771 2475776 10 97 1.0 6.5 3.8 2.1 105 chr2L 2475671 intergenic not near genes chr2L 2475724 intergenic not near genes chr2L 2475776 intergenic not near genes chr2L_10_2475001 chr2L_2475001 RAL-439 39 chr2L 2503695 2503732 chr2L 2504494 2504496 4 784 6.0 6.5 6.2 0.6 801 chr2L 2503695 intergenic not near genes chr2L 2504096 intergenic not near genes chr2L 2504496 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-439 40 chr2L 2565548 2565561 chr2L 2571627 2571638 297 9 6088 3.0 4.5 3.8 1.9 6090 chr2L 2565548 exon Cyp309a2 - chr2L 2568593 intron Cyp309a2 - chr2L 2571638 intron Cyp309a2 - chr2L_9_2565001 chr2L_2565001 RAL-439 41 chr2L 2667611 2667658 chr2L 2667703 2667710 6 75 2.0 2.0 2.0 2.0 99 chr2L 2667611 intergenic not near genes chr2L 2667660 intergenic not near genes chr2L 2667710 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-439 42 chr2L 2724384 2724439 chr2L 2724480 2724520 17 89 7.0 7.0 7.0 2.1 136 chr2L 2724384 intergenic not near genes chr2L 2724452 intergenic not near genes chr2L 2724520 intergenic not near genes chr2L_17_2720001 chr2L_2720001 RAL-439 43 chr2L 2772595 2772626 chr2L 2779201 2779210 297 8 6601 2.5 6.5 4.5 1.5 6615 chr2L 2772595 3` UTR Syt1 - chr2L 2775902 intron Syt1 - chr2L 2779210 3` UTR Syt1 - chr2L_8_2775001 chr2L_2775001 RAL-439 44 chr2L 2909900 2909927 chr2L 2909989 2910011 8 95 4.5 5.0 4.8 1.4 111 chr2L 2909900 intron lilli + chr2L 2909956 intron lilli + chr2L 2910011 intron lilli + chr2L_8_2905001 chr2L_2905001 RAL-439 45 chr2L 2937418 2937448 chr2L 2937500 2937539 9 90 4.5 4.0 4.2 1.7 121 chr2L 2937418 intron lilli + chr2L 2937478 intron lilli + chr2L 2937539 intron lilli + chr2L_9_2935001 chr2L_2935001 RAL-439 46 chr2L 3073014 3073065 chr2L 3078237 3078263 copia 12 5217 1.5 2.0 1.8 4.3 5249 chr2L 3073014 intron toc - chr2L 3075638 intron toc - chr2L 3078263 intron toc - chr2L_12_3075001 chr2L_3075001 RAL-439 47 chr2L 3108862 3108886 chr2L 3108944 3108982 8 90 3.5 2.0 2.8 2.1 120 chr2L 3108862 intron toc - chr2L 3108922 intron toc - chr2L 3108982 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-439 48 chr2L 3117387 3117402 chr2L 3117695 3117710 4 307 7.5 3.0 5.2 0.6 323 chr2L 3117387 intron toc - chr2L 3117548 intron toc - chr2L 3117710 intron toc - chr2L_4_3115001 chr2L_3115001 RAL-439 49 chr2L 3117404 3117414 chr2L 3117694 3117701 4 296 5.5 3.0 4.2 0.8 297 chr2L 3117404 intron toc - chr2L 3117552 intron toc - chr2L 3117701 intron toc - chr2L_4_3115001 chr2L_3115001 RAL-439 50 chr2L 3192187 3192227 chr2L 3192318 3192358 8 129 1.0 4.0 2.5 2.3 171 chr2L 3192187 exon CG34393 - chr2L 3192272 intron CG34393 - chr2L 3192358 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-439 51 chr2L 3251492 3251527 chr2L 3259060 3259087 springer 6 7572 2.0 6.0 4.0 1.2 7595 chr2L 3251492 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259087 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-439 52 chr2L 3291216 3291245 chr2L 3291316 3291345 4 96 8.5 1.5 5.0 0.7 129 chr2L 3291216 intergenic CG9664 - chr2L 3291280 3` UTR CG9664 - chr2L 3291345 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-439 53 chr2L 3388579 3388627 chr2L 3388840 3388878 pogo 11 258 7.0 6.5 6.8 1.4 299 chr2L 3388579 intergenic CG42460 - chr2L 3388728 intergenic CG42460 - chr2L 3388878 intergenic CG42460 -,CR44791 + chr2L_11_3385001 chr2L_3385001 RAL-439 54 chr2L 3437148 3437158 chr2L 3437241 3437261 5 101 0.5 4.0 2.2 1.6 113 chr2L 3437148 intergenic not near genes chr2L 3437204 intergenic not near genes chr2L 3437261 intergenic not near genes chr2L_5_3435001 chr2L_3435001 RAL-439 55 chr2L 3604260 3604286 chr2L 3604408 3604439 6 148 3.5 4.5 4.0 1.2 179 chr2L 3604260 3` UTR odd - chr2L 3604350 3` UTR odd - chr2L 3604439 3` UTR odd - chr2L_6_3600001 chr2L_3600001 RAL-439 56 chr2L 3634089 3634134 chr2L 3634186 3634203 16 96 9.5 7.0 8.2 1.7 114 chr2L 3634089 intron for - chr2L 3634146 intron for - chr2L 3634203 intron for - chr2L_16_3630001 chr2L_3630001 RAL-439 57 chr2L 3649795 3649804 chr2L 3654990 3655026 copia 4 5215 0.0 7.5 3.8 0.8 5231 chr2L 3649795 intron for - chr2L 3652410 intron for - chr2L 3655026 intron for - chr2L_4_3650001 chr2L_3650001 RAL-439 58 chr2L 3667958 3667980 chr2L 3668131 3668166 6 172 5.0 2.5 3.8 1.2 208 chr2L 3667958 intron CG34340 + chr2L 3668062 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668166 intron,exon CG34340 +,Sfp24Ba - chr2L_6_3665001 chr2L_3665001 RAL-439 59 chr2L 3707542 3707590 chr2L 3707644 3707652 12 95 5.0 2.0 3.5 2.7 110 chr2L 3707542 exon cutlet - chr2L 3707597 intron cutlet - chr2L 3707652 intron cutlet - chr2L_12_3705001 chr2L_3705001 RAL-439 60 chr2L 3831827 3831864 chr2L 3831928 3831965 16 98 2.5 4.0 3.2 3.8 138 chr2L 3831827 intergenic not near genes chr2L 3831896 intergenic not near genes chr2L 3831965 intergenic not near genes chr2L_16_3830001 chr2L_3830001 RAL-439 61 chr2L 3943777 3943822 chr2L 3943888 3943928 9 109 0.5 4.5 2.5 2.6 151 chr2L 3943777 intron fred - chr2L 3943852 intron fred - chr2L 3943928 intron fred - chr2L_9_3940001 chr2L_3940001 RAL-439 62 chr2L 4037781 4037807 chr2L 4037888 4037914 12 105 5.0 1.0 3.0 3.0 133 chr2L 4037781 intron ed + chr2L 4037848 intron ed + chr2L 4037914 intron ed + chr2L_12_4035001 chr2L_4035001 RAL-439 63 chr2L 4184455 4184509 chr2L 4184794 4184838 8 328 0.0 6.0 3.0 2.0 383 chr2L 4184455 intergenic not near genes chr2L 4184646 intergenic not near genes chr2L 4184838 intergenic not near genes chr2L_8_4180001 chr2L_4180001 RAL-439 64 chr2L 4224276 4224304 chr2L 4224423 4224471 9 156 22.5 23.5 23.0 0.4 195 chr2L 4224276 intergenic CG3702 - chr2L 4224374 intergenic CG3702 - chr2L 4224471 intergenic CG3702 - chr2L_9_4220001 chr2L_4220001 RAL-439 65 chr2L 4351490 4351501 chr2L 4351556 4351597 6 84 3.5 3.0 3.2 1.4 107 chr2L 4351490 intergenic CR44700 + chr2L 4351544 intergenic CR44700 + chr2L 4351597 intergenic CR44700 + chr2L_6_4350001 chr2L_4350001 RAL-439 66 chr2L 4356614 4356658 chr2L 4356713 4356757 9 99 2.5 3.5 3.0 2.2 143 chr2L 4356614 intergenic not near genes chr2L 4356686 intergenic not near genes chr2L 4356757 intergenic not near genes chr2L_9_4355001 chr2L_4355001 RAL-439 67 chr2L 4386117 4386153 chr2L 4386244 4386270 7 126 1.5 3.5 2.5 2.0 153 chr2L 4386117 intergenic CG3338 -,Psf2 - chr2L 4386194 3` UTR Psf2 - chr2L 4386270 3` UTR Psf2 - chr2L_7_4385001 chr2L_4385001 RAL-439 68 chr2L 4601695 4601734 chr2L 4609143 4609195 mdg1 15 7457 2.5 3.5 3.0 3.8 7500 chr2L 4601695 intron dp - chr2L 4605445 intron dp - chr2L 4609195 intron dp - chr2L_15_4605001 chr2L_4605001 RAL-439 69 chr2L 4661838 4661852 chr2L 4669423 4669432 opus 5 7592 3.5 3.5 3.5 1.1 7594 chr2L 4661838 intergenic not near genes chr2L 4665635 intergenic not near genes chr2L 4669432 intergenic not near genes chr2L_5_4665001 chr2L_4665001 RAL-439 70 chr2L 4681283 4681297 chr2L 4681567 4681576 5 283 7.0 2.5 4.8 0.9 293 chr2L 4681283 intergenic not near genes chr2L 4681430 intergenic not near genes chr2L 4681576 intergenic not near genes chr2L_5_4680001 chr2L_4680001 RAL-439 71 chr2L 4681299 4681318 chr2L 4681561 4681562 6 260 2.0 1.0 1.5 2.4 263 chr2L 4681299 intergenic not near genes chr2L 4681430 intergenic not near genes chr2L 4681562 intergenic not near genes chr2L_6_4680001 chr2L_4680001 RAL-439 72 chr2L 4770103 4770133 chr2L 4770201 4770236 7 101 1.5 5.0 3.2 1.7 133 chr2L 4770103 intron CG15630 - chr2L 4770170 intron CG15630 - chr2L 4770236 intron CG15630 - chr2L_7_4770001 chr2L_4770001 RAL-439 73 chr2L 4803864 4803912 chr2L 4803968 4803991 12 95 4.5 4.0 4.2 2.3 127 chr2L 4803864 intergenic not near genes chr2L 4803928 intergenic not near genes chr2L 4803991 intergenic not near genes chr2L_12_4800001 chr2L_4800001 RAL-439 74 chr2L 4819500 4819506 chr2L 4819632 4819649 5 139 2.0 3.0 2.5 1.4 149 chr2L 4819500 intergenic not near genes chr2L 4819574 intergenic not near genes chr2L 4819649 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-439 75 chr2L 4819507 4819518 chr2L 4819627 4819636 4 131 2.0 3.0 2.5 1.1 129 chr2L 4819507 intergenic not near genes chr2L 4819572 intergenic not near genes chr2L 4819636 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-439 76 chr2L 4953512 4953533 chr2L 4953756 4953764 pogo 7 242 5.0 4.0 4.5 1.3 252 chr2L 4953512 intergenic Jon25Bii - chr2L 4953638 intergenic not near genes chr2L 4953764 intergenic not near genes chr2L_7_4950001 chr2L_4950001 RAL-439 77 chr2L 5092395 5092443 chr2L 5092502 5092550 11 102 2.5 6.5 4.5 2.0 155 chr2L 5092395 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092550 intron pgant5 - chr2L_11_5090001 chr2L_5090001 RAL-439 78 chr2L 5117284 5117325 chr2L 5117381 5117390 11 88 1.5 2.5 2.0 3.7 106 chr2L 5117284 intron Msp300 + chr2L 5117337 intron Msp300 + chr2L 5117390 intron Msp300 + chr2L_11_5115001 chr2L_5115001 RAL-439 79 chr2L 5120969 5121003 chr2L 5121072 5121102 8 107 4.0 1.0 2.5 2.3 133 chr2L 5120969 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121102 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-439 80 chr2L 5342528 5342547 chr2L 5345180 5345199 Doc 9 2652 8.5 5.5 7.0 1.1 2671 chr2L 5342528 intergenic CG12512 - chr2L 5343864 intergenic not near genes chr2L 5345199 intergenic not near genes chr2L_9_5340001 chr2L_5340001 RAL-439 81 chr2L 5342553 5342572 chr2L 5345179 5345224 Doc 7 2638 4.5 5.0 4.8 1.2 2671 chr2L 5342553 intergenic CG12512 - chr2L 5343888 intergenic not near genes chr2L 5345224 intergenic not near genes chr2L_7_5340001 chr2L_5340001 RAL-439 82 chr2L 5378410 5378451 chr2L 5378509 5378550 14 96 4.5 4.0 4.2 2.7 140 chr2L 5378410 intergenic not near genes chr2L 5378480 intergenic not near genes chr2L 5378550 intergenic not near genes chr2L_14_5375001 chr2L_5375001 RAL-439 83 chr2L 5475136 5475164 chr2L 5475261 5475289 7 124 4.0 2.5 3.2 1.7 153 chr2L 5475136 intergenic not near genes chr2L 5475212 intergenic not near genes chr2L 5475289 intergenic not near genes chr2L_7_5475001 chr2L_5475001 RAL-439 84 chr2L 5501426 5501471 chr2L 5501522 5501567 9 95 5.5 2.5 4.0 1.8 141 chr2L 5501426 intergenic not near genes chr2L 5501496 intergenic not near genes chr2L 5501567 intergenic not near genes chr2L_9_5500001 chr2L_5500001 RAL-439 85 chr2L 5508527 5508545 chr2L 5508609 5508610 6 88 5.0 5.0 5.0 1.0 83 chr2L 5508527 intergenic not near genes chr2L 5508568 intergenic not near genes chr2L 5508610 intergenic not near genes chr2L_6_5505001 chr2L_5505001 RAL-439 86 chr2L 5508549 5508557 chr2L 5508607 5508653 5 87 4.0 4.5 4.2 1.0 104 chr2L 5508549 intergenic not near genes chr2L 5508601 intergenic not near genes chr2L 5508653 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-439 87 chr2L 5511310 5511342 chr2L 5511413 5511435 5 99 9.0 2.5 5.8 0.7 125 chr2L 5511310 intergenic not near genes chr2L 5511372 intergenic not near genes chr2L 5511435 intergenic not near genes chr2L_5_5510001 chr2L_5510001 RAL-439 88 chr2L 5784929 5784979 chr2L 5785032 5785077 17 100 7.5 4.0 5.8 2.5 148 chr2L 5784929 intron CG9171 - chr2L 5785003 intron CG9171 - chr2L 5785077 intron CG9171 - chr2L_17_5785001 chr2L_5785001 RAL-439 89 chr2L 5805787 5805791 chr2L 5806222 5806246 5 450 1.0 5.0 3.0 1.2 459 chr2L 5805787 intron CG11034 + chr2L 5806016 intron CG11034 + chr2L 5806246 intron CG11034 + chr2L_5_5805001 chr2L_5805001 RAL-439 90 chr2L 5814674 5814705 chr2L 5814777 5814807 7 101 7.0 4.0 5.5 1.1 133 chr2L 5814674 intergenic not near genes chr2L 5814740 intergenic not near genes chr2L 5814807 intergenic not near genes chr2L_7_5810001 chr2L_5810001 RAL-439 91 chr2L 5827707 5827738 chr2L 5836724 5836761 roo 6 9020 6.5 7.5 7.0 0.8 9054 chr2L 5827707 intron TrissinR + chr2L 5832234 intron TrissinR + chr2L 5836761 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-439 92 chr2L 5926250 5926452 chr2L 5926346 5926560 9 117 0.0 0.0 0.0 9.0 310 chr2L 5926250 intron dsf + chr2L 5926405 intron dsf + chr2L 5926560 intron dsf + chr2L_9_5925001 chr2L_5925001 RAL-439 93 chr2L 5931303 5931328 chr2L 5931429 5931455 12 131 5.5 7.5 6.5 1.6 152 chr2L 5931303 intron dsf + chr2L 5931379 intron dsf + chr2L 5931455 intron dsf + chr2L_12_5930001 chr2L_5930001 RAL-439 94 chr2L 5962261 5962270 chr2L 5962357 5962361 5 95 9.5 7.5 8.5 0.5 100 chr2L 5962261 intergenic not near genes chr2L 5962311 intergenic not near genes chr2L 5962361 intergenic not near genes chr2L_5_5960001 chr2L_5960001 RAL-439 95 chr2L 5962272 5962298 chr2L 5962347 5962394 9 87 4.5 5.5 5.0 1.5 122 chr2L 5962272 intergenic not near genes chr2L 5962333 intergenic not near genes chr2L 5962394 intergenic not near genes chr2L_9_5960001 chr2L_5960001 RAL-439 96 chr2L 5989045 5989065 chr2L 5989134 5989161 11 92 3.5 2.5 3.0 2.8 116 chr2L 5989045 intergenic ifc +,lid - chr2L 5989103 intergenic ifc +,lid - chr2L 5989161 intergenic lid -,ifc + chr2L_11_5985001 chr2L_5985001 RAL-439 97 chr2L 6002421 6002445 chr2L 6002527 6002551 8 104 6.0 9.0 7.5 0.9 130 chr2L 6002421 3` UTR Tsp26A + chr2L 6002486 3` UTR Tsp26A + chr2L 6002551 3` UTR Tsp26A + chr2L_8_6000001 chr2L_6000001 RAL-439 98 chr2L 6002447 6002467 chr2L 6002523 6002573 9 97 3.0 8.5 5.8 1.3 126 chr2L 6002447 3` UTR Tsp26A + chr2L 6002510 3` UTR Tsp26A + chr2L 6002573 3` UTR Tsp26A + chr2L_9_6000001 chr2L_6000001 RAL-439 99 chr2L 6007100 6007125 chr2L 6007186 6007203 8 87 1.0 2.5 1.8 2.9 103 chr2L 6007100 intergenic CG9098 -,Gal - chr2L 6007152 intergenic CG9098 -,Gal - chr2L 6007203 intergenic CG9098 -,Gal - chr2L_8_6005001 chr2L_6005001 RAL-439 100 chr2L 6050420 6050466 chr2L 6050544 6050569 9 116 6.0 4.0 5.0 1.5 149 chr2L 6050420 3` UTR CG12393 + chr2L 6050494 intergenic CG12393 +,CG9135 + chr2L 6050569 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-439 101 chr2L 6108776 6108814 chr2L 6108878 6108911 7 90 2.5 3.0 2.8 1.8 135 chr2L 6108776 intron stai + chr2L 6108844 intron stai + chr2L 6108911 intron stai + chr2L_7_6105001 chr2L_6105001 RAL-439 102 chr2L 6147936 6147967 chr2L 6148051 6148083 5 110 0.5 2.5 1.5 2.0 147 chr2L 6147936 intergenic not near genes chr2L 6148010 intergenic not near genes chr2L 6148083 intergenic not near genes chr2L_5_6145001 chr2L_6145001 RAL-439 103 chr2L 6157270 6157299 chr2L 6157379 6157408 11 106 1.5 9.0 5.2 1.8 138 chr2L 6157270 intergenic not near genes chr2L 6157339 intergenic not near genes chr2L 6157408 intergenic not near genes chr2L_11_6155001 chr2L_6155001 RAL-439 104 chr2L 6227707 6227727 chr2L 6227803 6227831 8 102 4.0 4.5 4.2 1.5 124 chr2L 6227707 intergenic not near genes chr2L 6227769 intergenic not near genes chr2L 6227831 intergenic not near genes chr2L_8_6225001 chr2L_6225001 RAL-439 105 chr2L 6283944 6283977 chr2L 6284055 6284098 5 116 1.5 3.0 2.2 1.6 154 chr2L 6283944 intron Ddr + chr2L 6284021 intron Ddr + chr2L 6284098 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-439 106 chr2L 6363129 6363170 chr2L 6366071 6366112 Burdock 5 2937 2.5 1.0 1.8 1.8 2983 chr2L 6363129 intergenic not near genes chr2L 6364620 intergenic not near genes chr2L 6366112 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-439 107 chr2L 6426836 6426889 chr2L 6445113 6445129 roo 14 18271 7.5 2.5 5.0 2.3 18293 chr2L 6426836 3` UTR CG9527 - chr2L 6435982 intron CG9527 - chr2L 6445129 exon CG9527 - chr2L_14_6435001 chr2L_6435001 RAL-439 108 chr2L 6465789 6465841 chr2L 6466003 6466054 4 208 1.0 1.5 1.2 1.8 265 chr2L 6465789 intergenic CG16947 -,CG9531 - chr2L 6465922 intergenic CG16947 -,CG9531 - chr2L 6466054 intergenic CG9531 -,CG16947 - chr2L_4_6465001 chr2L_6465001 RAL-439 109 chr2L 6504562 6504608 chr2L 6504663 6504669 4 86 0.5 2.5 1.5 1.6 107 chr2L 6504562 intron CG31637 + chr2L 6504616 intron CG31637 + chr2L 6504669 intron CG31637 + chr2L_4_6500001 chr2L_6500001 RAL-439 110 chr2L 6509249 6509300 chr2L 6509419 6509465 9 153 5.5 5.5 5.5 1.4 216 chr2L 6509249 intron CG31637 + chr2L 6509357 intron CG31637 + chr2L 6509465 intron CG31637 + chr2L_9_6505001 chr2L_6505001 RAL-439 111 chr2L 6544356 6544378 chr2L 6544468 6544489 8 110 3.5 4.0 3.8 1.7 133 chr2L 6544356 intron eya - chr2L 6544422 intron eya - chr2L 6544489 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-439 112 chr2L 6544379 6544391 chr2L 6544466 6544502 7 104 3.5 4.0 3.8 1.5 123 chr2L 6544379 intron eya - chr2L 6544440 intron eya - chr2L 6544502 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-439 113 chr2L 6598111 6598149 chr2L 6599073 6599126 9 965 2.0 4.0 3.0 2.2 1015 chr2L 6598111 intron CG11319 - chr2L 6598618 intron CG11319 - chr2L 6599126 intron CG11319 - chr2L_9_6595001 chr2L_6595001 RAL-439 114 chr2L 6626871 6626911 chr2L 6626976 6626995 6 98 7.5 2.5 5.0 1.0 124 chr2L 6626871 intron Oatp26F - chr2L 6626933 intron Oatp26F - chr2L 6626995 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-439 115 chr2L 6787887 6787922 chr2L 6789838 6789853 4 1941 16.5 31.5 24.0 0.2 1966 chr2L 6787887 intergenic not near genes chr2L 6788870 intergenic not near genes chr2L 6789853 3` UTR nrv2 - chr2L_4_6785001 chr2L_6785001 RAL-439 116 chr2L 6850360 6850412 chr2L 6850463 6850494 9 97 4.0 3.0 3.5 2.0 134 chr2L 6850360 intergenic not near genes chr2L 6850427 intergenic not near genes chr2L 6850494 intergenic not near genes chr2L_9_6850001 chr2L_6850001 RAL-439 117 chr2L 7005225 7005249 chr2L 7005331 7005364 12 114 3.5 3.0 3.2 2.9 139 chr2L 7005225 intron uif - chr2L 7005294 intron uif - chr2L 7005364 intron uif - chr2L_12_7005001 chr2L_7005001 RAL-439 118 chr2L 7042045 7042082 chr2L 7042154 7042170 6 104 4.0 3.0 3.5 1.3 125 chr2L 7042045 intron milt + chr2L 7042108 intron milt + chr2L 7042170 intron milt + chr2L_6_7040001 chr2L_7040001 RAL-439 119 chr2L 7048016 7048033 chr2L 7048464 7048481 6 448 3.0 3.5 3.2 1.4 465 chr2L 7048016 intron milt + chr2L 7048248 intron milt + chr2L 7048481 intron milt + chr2L_6_7045001 chr2L_7045001 RAL-439 120 chr2L 7106804 7106817 chr2L 7106913 7106916 4 105 3.0 1.0 2.0 1.3 112 chr2L 7106804 intron Pvf3 - chr2L 7106860 intron Pvf3 - chr2L 7106916 intron Pvf3 - chr2L_4_7105001 chr2L_7105001 RAL-439 121 chr2L 7111743 7111768 chr2L 7111847 7111873 5 105 3.5 0.0 1.8 1.8 130 chr2L 7111743 intron Pvf3 - chr2L 7111808 intron Pvf3 - chr2L 7111873 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-439 122 chr2L 7125775 7125824 chr2L 7125910 7125945 10 126 1.5 5.0 3.2 2.4 170 chr2L 7125775 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125945 intron Pvf3 - chr2L_10_7125001 chr2L_7125001 RAL-439 123 chr2L 7197976 7198017 chr2L 7198075 7198116 11 97 3.5 4.0 3.8 2.3 140 chr2L 7197976 intron CG4502 - chr2L 7198046 intron CG4502 - chr2L 7198116 intron CG4502 - chr2L_11_7195001 chr2L_7195001 RAL-439 124 chr2L 7254526 7254546 chr2L 7254614 7254640 8 96 1.0 9.0 5.0 1.3 114 chr2L 7254526 intergenic not near genes chr2L 7254583 intergenic not near genes chr2L 7254640 intergenic not near genes chr2L_8_7250001 chr2L_7250001 RAL-439 125 chr2L 7268450 7268473 chr2L 7268540 7268563 7 97 0.0 1.0 0.5 4.7 113 chr2L 7268450 intron Wnt4 - chr2L 7268506 intron Wnt4 - chr2L 7268563 intron Wnt4 - chr2L_7_7265001 chr2L_7265001 RAL-439 126 chr2L 7335188 7335234 chr2L 7335305 7335351 9 109 6.0 6.0 6.0 1.3 163 chr2L 7335188 intron Wnt6 + chr2L 7335270 intron Wnt6 + chr2L 7335351 intron Wnt6 + chr2L_9_7335001 chr2L_7335001 RAL-439 127 chr2L 7377891 7377898 chr2L 7377998 7378015 4 112 0.0 6.5 3.2 1.0 124 chr2L 7377891 intron ninaC + chr2L 7377953 intron ninaC + chr2L 7378015 intron ninaC + chr2L_4_7375001 chr2L_7375001 RAL-439 128 chr2L 7399295 7399334 chr2L 7399688 7399712 4 389 1.5 7.0 4.2 0.8 417 chr2L 7399295 intergenic not near genes chr2L 7399504 intergenic not near genes chr2L 7399712 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-439 129 chr2L 7436186 7436202 chr2L 7436295 7436295 7 109 7.0 5.0 6.0 1.0 109 chr2L 7436186 intergenic not near genes chr2L 7436240 intergenic not near genes chr2L 7436295 intergenic not near genes chr2L_7_7435001 chr2L_7435001 RAL-439 130 chr2L 7436203 7436215 chr2L 7436291 7436329 5 104 4.5 5.0 4.8 0.9 126 chr2L 7436203 intergenic not near genes chr2L 7436266 intergenic not near genes chr2L 7436329 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-439 131 chr2L 7436216 7436221 chr2L 7436290 7436335 5 93 4.0 5.0 4.5 0.9 119 chr2L 7436216 intergenic not near genes chr2L 7436276 intergenic not near genes chr2L 7436335 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-439 132 chr2L 7717862 7717896 chr2L 7717960 7717974 11 103 4.5 5.0 4.8 1.9 112 chr2L 7717862 exon CG13793 - chr2L 7717918 exon CG13793 - chr2L 7717974 exon CG13793 - chr2L_11_7715001 chr2L_7715001 RAL-439 133 chr2L 7959024 7959073 chr2L 7960455 7960483 pogo 14 1428 7.0 4.5 5.8 2.1 1459 chr2L 7959024 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960483 intron Snoo - chr2L_14_7955001 chr2L_7955001 RAL-439 134 chr2L 7973052 7973099 chr2L 7973213 7973259 11 149 5.0 5.5 5.2 1.8 207 chr2L 7973052 intron Snoo - chr2L 7973156 intron Snoo - chr2L 7973259 intron Snoo - chr2L_11_7970001 chr2L_7970001 RAL-439 135 chr2L 7994602 7994643 chr2L 7994775 7994816 5 161 2.5 7.5 5.0 0.8 214 chr2L 7994602 3` UTR CG7227 - chr2L 7994709 3` UTR CG7227 - chr2L 7994816 3` UTR,5` UTR CG7227 -,CR44996 + chr2L_5_7990001 chr2L_7990001 RAL-439 136 chr2L 8002573 8002604 chr2L 8002719 8002740 5 143 8.5 0.0 4.2 1.0 167 chr2L 8002573 intron Wwox - chr2L 8002656 intron Wwox - chr2L 8002740 intron Wwox - chr2L_5_8000001 chr2L_8000001 RAL-439 137 chr2L 8003033 8003117 chr2L 8003167 8003223 6 109 0.0 4.5 2.2 1.9 190 chr2L 8003033 intron Wwox - chr2L 8003128 intron Wwox - chr2L 8003223 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-439 138 chr2L 8167129 8167162 chr2L 8167238 8167263 5 108 7.5 2.0 4.8 0.9 134 chr2L 8167129 intron Piezo + chr2L 8167196 intron Piezo + chr2L 8167263 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-439 139 chr2L 8171276 8171299 chr2L 8171354 8171397 8 94 1.5 5.0 3.2 1.9 121 chr2L 8171276 intron Piezo + chr2L 8171336 intron Piezo + chr2L 8171397 intron Piezo + chr2L_8_8170001 chr2L_8170001 RAL-439 140 chr2L 8184914 8184954 chr2L 8185015 8185065 17 107 2.5 3.5 3.0 4.2 151 chr2L 8184914 intron Piezo + chr2L 8184990 intron Piezo + chr2L 8185065 intron Piezo + chr2L_17_8180001 chr2L_8180001 RAL-439 141 chr2L 8349589 8349625 chr2L 8349714 8349745 7 122 3.0 0.0 1.5 2.8 156 chr2L 8349589 exon CG7778 + chr2L 8349667 intron CG7778 + chr2L 8349745 exon CG7778 + chr2L_7_8345001 chr2L_8345001 RAL-439 142 chr2L 8351539 8351587 chr2L 8351636 8351664 13 87 0.0 7.0 3.5 2.9 125 chr2L 8351539 intergenic CG7778 + chr2L 8351602 intergenic CG7778 + chr2L 8351664 intergenic not near genes chr2L_13_8350001 chr2L_8350001 RAL-439 143 chr2L 8412870 8412892 chr2L 8412977 8412979 6 99 9.5 4.5 7.0 0.8 109 chr2L 8412870 3` UTR CG13398 - chr2L 8412924 3` UTR CG13398 - chr2L 8412979 3` UTR CG13398 - chr2L_6_8410001 chr2L_8410001 RAL-439 144 chr2L 8452412 8452449 chr2L 8461593 8461635 roo 17 9187 5.5 10.0 7.8 1.9 9223 chr2L 8452412 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461635 intron fu12 - chr2L_17_8455001 chr2L_8455001 RAL-439 145 chr2L 8508980 8509003 chr2L 8509097 8509120 12 120 0.0 2.0 1.0 6.0 140 chr2L 8508980 intergenic CG13096 - chr2L 8509050 intergenic CG13096 - chr2L 8509120 3` UTR CG13096 - chr2L_12_8505001 chr2L_8505001 RAL-439 146 chr2L 8538147 8538180 chr2L 8538242 8538254 8 87 10.0 0.0 5.0 1.3 107 chr2L 8538147 intron CG17834 + chr2L 8538200 intron CG17834 + chr2L 8538254 intron CG17834 + chr2L_8_8535001 chr2L_8535001 RAL-439 147 chr2L 8593749 8593796 chr2L 8593865 8593869 14 109 4.5 7.5 6.0 2.0 120 chr2L 8593749 intron,intron Sema-1a +,CR43855 - chr2L 8593809 intron,intron Sema-1a +,CR43855 - chr2L 8593869 intron,intron Sema-1a +,CR43855 - chr2L_14_8590001 chr2L_8590001 RAL-439 148 chr2L 8594451 8594496 chr2L 8601518 8601570 297 5 7071 2.5 0.5 1.5 2.0 7119 chr2L 8594451 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598010 intron Sema-1a + chr2L 8601570 intron Sema-1a + chr2L_5_8595001 chr2L_8595001 RAL-439 149 chr2L 8612806 8612843 chr2L 8613041 8613088 6 242 1.5 1.5 1.5 2.4 282 chr2L 8612806 intron Sema-1a + chr2L 8612947 intron Sema-1a + chr2L 8613088 intron Sema-1a + chr2L_6_8610001 chr2L_8610001 RAL-439 150 chr2L 8653092 8653129 chr2L 8653194 8653231 4 102 3.0 6.5 4.8 0.7 139 chr2L 8653092 intron Sema-1a + chr2L 8653162 intron Sema-1a + chr2L 8653231 intron Sema-1a + chr2L_4_8650001 chr2L_8650001 RAL-439 151 chr2L 8723103 8723138 chr2L 8731493 8731535 Tirant 13 8394 3.0 3.0 3.0 3.2 8432 chr2L 8723103 intron raw - chr2L 8727319 intron raw - chr2L 8731535 intron raw - chr2L_13_8725001 chr2L_8725001 RAL-439 152 chr2L 8733976 8734027 chr2L 8734102 8734128 10 122 4.5 9.0 6.8 1.3 152 chr2L 8733976 intron raw - chr2L 8734052 intron raw - chr2L 8734128 intron raw - chr2L_10_8730001 chr2L_8730001 RAL-439 153 chr2L 8750739 8750777 chr2L 8750840 8750873 7 102 0.0 6.5 3.2 1.7 134 chr2L 8750739 intergenic not near genes chr2L 8750806 intergenic not near genes chr2L 8750873 intergenic not near genes chr2L_7_8750001 chr2L_8750001 RAL-439 154 chr2L 8759971 8760008 chr2L 8760132 8760186 4 165 2.0 0.0 1.0 2.0 215 chr2L 8759971 intergenic not near genes chr2L 8760078 intergenic not near genes chr2L 8760186 intergenic not near genes chr2L_4_8760001 chr2L_8760001 RAL-439 155 chr2L 8786533 8786575 chr2L 8786640 8786676 7 103 3.0 7.5 5.2 1.1 143 chr2L 8786533 intergenic not near genes chr2L 8786604 intergenic not near genes chr2L 8786676 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-439 156 chr2L 8788775 8788790 chr2L 8788855 8788901 7 102 3.0 6.0 4.5 1.3 126 chr2L 8788775 intergenic not near genes chr2L 8788838 intergenic not near genes chr2L 8788901 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-439 157 chr2L 8795168 8795217 chr2L 8795313 8795364 4 146 5.5 1.5 3.5 0.9 196 chr2L 8795168 intergenic not near genes chr2L 8795266 intergenic not near genes chr2L 8795364 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-439 158 chr2L 8875418 8875472 chr2L 8875511 8875525 9 89 1.5 2.0 1.8 3.2 107 chr2L 8875418 intergenic not near genes chr2L 8875472 intergenic not near genes chr2L 8875525 intergenic not near genes chr2L_9_8875001 chr2L_8875001 RAL-439 159 chr2L 8900381 8900412 chr2L 8900459 8900498 15 83 2.0 2.5 2.2 4.7 117 chr2L 8900381 intron CG34398 + chr2L 8900440 intron CG34398 + chr2L 8900498 intron CG34398 + chr2L_15_8900001 chr2L_8900001 RAL-439 160 chr2L 9000257 9000307 chr2L 9007787 9007837 roo 10 7524 6.5 5.5 6.0 1.4 7580 chr2L 9000257 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007837 intergenic not near genes chr2L_10_9000001 chr2L_9000001 RAL-439 161 chr2L 9073274 9073298 chr2L 9073356 9073365 11 91 1.5 3.0 2.2 3.4 91 chr2L 9073274 intergenic not near genes chr2L 9073320 intergenic not near genes chr2L 9073365 intergenic not near genes chr2L_11_9070001 chr2L_9070001 RAL-439 162 chr2L 9077015 9077055 chr2L 9077588 9077608 4 566 1.5 0.0 0.8 2.2 593 chr2L 9077015 intergenic CG12439 + chr2L 9077312 exon CG12439 + chr2L 9077608 exon CG12439 + chr2L_4_9075001 chr2L_9075001 RAL-439 163 chr2L 9095552 9095592 chr2L 9095659 9095662 9 100 5.5 1.5 3.5 2.0 110 chr2L 9095552 intergenic not near genes chr2L 9095607 intergenic not near genes chr2L 9095662 intergenic not near genes chr2L_9_9095001 chr2L_9095001 RAL-439 164 chr2L 9116588 9116630 chr2L 9116712 9116742 9 124 3.0 3.5 3.2 2.1 154 chr2L 9116588 intergenic not near genes chr2L 9116665 intergenic not near genes chr2L 9116742 intergenic not near genes chr2L_9_9115001 chr2L_9115001 RAL-439 165 chr2L 9195858 9195882 chr2L 9195956 9195964 11 99 4.5 6.5 5.5 1.7 106 chr2L 9195858 intron tai + chr2L 9195911 intron tai + chr2L 9195964 intron tai + chr2L_11_9195001 chr2L_9195001 RAL-439 166 chr2L 9217979 9218004 chr2L 9222756 9222819 Doc 4 4783 4.0 0.0 2.0 1.3 4840 chr2L 9217979 intron tai + chr2L 9220399 intron tai + chr2L 9222819 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-439 167 chr2L 9270728 9270763 chr2L 9270837 9270843 6 99 2.5 1.5 2.0 2.0 115 chr2L 9270728 intron Ggamma30A + chr2L 9270786 intron Ggamma30A + chr2L 9270843 intron Ggamma30A + chr2L_6_9270001 chr2L_9270001 RAL-439 168 chr2L 9279976 9280021 chr2L 9280080 9280135 8 109 0.5 5.0 2.8 2.1 159 chr2L 9279976 intron Ggamma30A + chr2L 9280056 intron Ggamma30A + chr2L 9280135 intron Ggamma30A + chr2L_8_9280001 chr2L_9280001 RAL-439 169 chr2L 9287304 9287321 chr2L 9287421 9287438 4 116 7.0 3.0 5.0 0.7 134 chr2L 9287304 intron Ggamma30A + chr2L 9287371 intron Ggamma30A + chr2L 9287438 intron Ggamma30A + chr2L_4_9285001 chr2L_9285001 RAL-439 170 chr2L 9287325 9287355 chr2L 9287419 9287444 12 99 2.5 2.5 2.5 3.4 119 chr2L 9287325 intron Ggamma30A + chr2L 9287384 intron Ggamma30A + chr2L 9287444 intron Ggamma30A + chr2L_12_9285001 chr2L_9285001 RAL-439 171 chr2L 9337439 9337489 chr2L 9337540 9337570 15 94 5.0 3.0 4.0 3.0 131 chr2L 9337439 intron Eaat1 + chr2L 9337504 intron Eaat1 + chr2L 9337570 intron Eaat1 + chr2L_15_9335001 chr2L_9335001 RAL-439 172 chr2L 9383573 9383591 chr2L 9383666 9383689 7 96 0.0 0.5 0.2 5.8 116 chr2L 9383573 intron Shawl - chr2L 9383631 intron Shawl - chr2L 9383689 intron Shawl - chr2L_7_9380001 chr2L_9380001 RAL-439 173 chr2L 9387235 9387278 chr2L 9387353 9387380 9 110 4.5 2.5 3.5 2.0 145 chr2L 9387235 intron Shawl - chr2L 9387308 intron Shawl - chr2L 9387380 intron Shawl - chr2L_9_9385001 chr2L_9385001 RAL-439 174 chr2L 9428487 9428538 chr2L 9428586 9428637 9 93 4.0 5.0 4.5 1.6 150 chr2L 9428487 exon CG42847 + chr2L 9428562 3` UTR CG42847 + chr2L 9428637 3` UTR CG42847 + chr2L_9_9425001 chr2L_9425001 RAL-439 175 chr2L 9451031 9451066 chr2L 9451154 9451175 4 120 0.0 3.0 1.5 1.6 144 chr2L 9451031 intron numb + chr2L 9451103 intron numb + chr2L 9451175 intron numb + chr2L_4_9450001 chr2L_9450001 RAL-439 176 chr2L 9454957 9455007 chr2L 9455079 9455129 10 115 5.5 3.0 4.2 1.9 172 chr2L 9454957 intron numb + chr2L 9455043 intron numb + chr2L 9455129 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-439 177 chr2L 9506348 9506368 chr2L 9506445 9506476 11 106 8.5 5.5 7.0 1.4 128 chr2L 9506348 intron CG33298 + chr2L 9506412 intron CG33298 + chr2L 9506476 intron CG33298 + chr2L_11_9505001 chr2L_9505001 RAL-439 178 chr2L 9808384 9808406 chr2L 9808481 9808503 5 96 8.5 8.0 8.2 0.5 119 chr2L 9808384 intron nAChRalpha6 - chr2L 9808444 intron nAChRalpha6 - chr2L 9808503 intron nAChRalpha6 - chr2L_5_9805001 chr2L_9805001 RAL-439 179 chr2L 9808410 9808424 chr2L 9808477 9808506 4 82 6.0 8.0 7.0 0.5 96 chr2L 9808410 intron nAChRalpha6 - chr2L 9808458 intron nAChRalpha6 - chr2L 9808506 intron nAChRalpha6 - chr2L_4_9805001 chr2L_9805001 RAL-439 180 chr2L 9873110 9873156 chr2L 9873406 9873452 10 295 4.5 3.0 3.8 2.1 342 chr2L 9873110 intron nAChRalpha6 - chr2L 9873281 intron nAChRalpha6 - chr2L 9873452 intron nAChRalpha6 - chr2L_10_9870001 chr2L_9870001 RAL-439 181 chr2L 9973747 9973752 chr2L 9980845 9980846 HMS-Beagle 4 7104 1.0 3.0 2.0 1.3 7099 chr2L 9973747 intergenic not near genes chr2L 9977296 intergenic not near genes chr2L 9980846 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-439 182 chr2L 10095609 10095663 chr2L 10095709 10095763 17 93 3.5 2.0 2.8 4.5 154 chr2L 10095609 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095763 intron CG44153 - chr2L_17_10095001 chr2L_10095001 RAL-439 183 chr2L 10105275 10105288 chr2L 10105371 10105384 5 95 4.0 4.5 4.2 1.0 109 chr2L 10105275 intron,intron CG44153 -,CG34109 + chr2L 10105330 intron,intron CG44153 -,CG34109 + chr2L 10105384 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-439 184 chr2L 10138181 10138185 chr2L 10143436 10143440 Rt1c 4 5259 1.5 3.0 2.2 1.2 5259 chr2L 10138181 intron CG44153 - chr2L 10140810 intron CG44153 - chr2L 10143440 intron CG44153 - chr2L_4_10140001 chr2L_10140001 RAL-439 185 chr2L 10156308 10156352 chr2L 10163798 10163816 blood 5 7473 4.5 5.0 4.8 0.9 7508 chr2L 10156308 intron,3` UTR CG44153 -,CG4839 + chr2L 10160062 intron CG44153 - chr2L 10163816 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-439 186 chr2L 10177883 10177918 chr2L 10177983 10178018 6 95 5.5 3.5 4.5 1.1 135 chr2L 10177883 intron CG44153 - chr2L 10177950 intron CG44153 - chr2L 10178018 intron CG44153 - chr2L_6_10175001 chr2L_10175001 RAL-439 187 chr2L 10191446 10191493 chr2L 10191549 10191586 13 96 2.5 7.5 5.0 2.2 140 chr2L 10191446 intron,5` UTR Sur -,CG31874 - chr2L 10191516 intron Sur - chr2L 10191586 intron Sur - chr2L_13_10190001 chr2L_10190001 RAL-439 188 chr2L 10209840 10209859 chr2L 10209927 10209946 8 92 5.0 0.0 2.5 2.3 106 chr2L 10209840 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209893 3` UTR CG5727 - chr2L 10209946 3` UTR CG5727 - chr2L_8_10205001 chr2L_10205001 RAL-439 189 chr2L 10232892 10232943 chr2L 10232990 10233026 19 90 3.0 9.0 6.0 2.7 134 chr2L 10232892 intron eEF1delta + chr2L 10232959 intron eEF1delta + chr2L 10233026 intron eEF1delta + chr2L_19_10230001 chr2L_10230001 RAL-439 190 chr2L 10276183 10276226 chr2L 10276276 10276324 12 93 5.5 3.0 4.2 2.3 141 chr2L 10276183 intron Utx - chr2L 10276254 intron Utx - chr2L 10276324 intron Utx - chr2L_12_10275001 chr2L_10275001 RAL-439 191 chr2L 10277996 10278030 chr2L 10278096 10278130 10 100 5.5 3.5 4.5 1.8 134 chr2L 10277996 intron Utx - chr2L 10278063 intron Utx - chr2L 10278130 intron Utx - chr2L_10_10275001 chr2L_10275001 RAL-439 192 chr2L 10278032 10278040 chr2L 10278094 10278140 5 92 5.0 3.5 4.2 1.0 108 chr2L 10278032 intron Utx - chr2L 10278086 intron Utx - chr2L 10278140 intron Utx - chr2L_5_10275001 chr2L_10275001 RAL-439 193 chr2L 10294658 10294688 chr2L 10294764 10294794 8 104 7.5 4.5 6.0 1.1 136 chr2L 10294658 intron Hand - chr2L 10294726 intron Hand - chr2L 10294794 intron Hand - chr2L_8_10290001 chr2L_10290001 RAL-439 194 chr2L 10458087 10458102 chr2L 10458368 10458377 4 280 1.5 0.0 0.8 2.2 290 chr2L 10458087 intron LM408 + chr2L 10458232 intron LM408 + chr2L 10458377 intron LM408 + chr2L_4_10455001 chr2L_10455001 RAL-439 195 chr2L 10515340 10515391 chr2L 10515453 10515504 17 104 4.5 6.5 5.5 2.6 164 chr2L 10515340 intron,intron CG45083 -,Fatp - chr2L 10515422 intron,intron CG45083 -,Fatp - chr2L 10515504 intron,intron CG45083 -,Fatp - chr2L_17_10515001 chr2L_10515001 RAL-439 196 chr2L 10572700 10572732 chr2L 10572780 10572818 11 92 2.0 4.5 3.2 2.6 118 chr2L 10572700 intron Trim9 + chr2L 10572759 intron Trim9 + chr2L 10572818 intron Trim9 + chr2L_11_10570001 chr2L_10570001 RAL-439 197 chr2L 10580772 10580819 chr2L 10580873 10580894 11 90 2.0 1.5 1.8 3.9 122 chr2L 10580772 intron Trim9 + chr2L 10580833 intron Trim9 + chr2L 10580894 intron Trim9 + chr2L_11_10580001 chr2L_10580001 RAL-439 198 chr2L 10592828 10592870 chr2L 10600502 10600552 opus 9 7676 1.5 3.0 2.2 2.8 7724 chr2L 10592828 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600552 intron Trim9 + chr2L_9_10595001 chr2L_10595001 RAL-439 199 chr2L 10688522 10688572 chr2L 10688618 10688668 13 87 4.5 4.0 4.2 2.5 146 chr2L 10688522 intergenic CG7294 - chr2L 10688595 intergenic CG7294 - chr2L 10688668 intergenic CG7294 - chr2L_13_10685001 chr2L_10685001 RAL-439 200 chr2L 10723527 10723541 chr2L 10723641 10723650 8 113 3.5 3.0 3.2 1.9 123 chr2L 10723527 intergenic not near genes chr2L 10723588 intergenic not near genes chr2L 10723650 intergenic not near genes chr2L_8_10720001 chr2L_10720001 RAL-439 201 chr2L 10724254 10724269 chr2L 10724703 10724718 6 448 3.0 5.5 4.2 1.2 464 chr2L 10724254 5` UTR CG6431 + chr2L 10724486 exon CG6431 + chr2L 10724718 intron CG6431 + chr2L_6_10720001 chr2L_10720001 RAL-439 202 chr2L 10724271 10724292 chr2L 10724702 10724724 6 437 1.5 5.5 3.5 1.3 453 chr2L 10724271 5` UTR CG6431 + chr2L 10724498 exon CG6431 + chr2L 10724724 intron CG6431 + chr2L_6_10720001 chr2L_10720001 RAL-439 203 chr2L 10803774 10803802 chr2L 10803857 10803908 11 96 4.0 4.0 4.0 2.2 134 chr2L 10803774 intergenic Nos - chr2L 10803841 intergenic Nos - chr2L 10803908 intergenic Nos - chr2L_11_10800001 chr2L_10800001 RAL-439 204 chr2L 10820500 10820536 chr2L 10820591 10820629 7 90 4.5 6.5 5.5 1.1 129 chr2L 10820500 intron Nos - chr2L 10820564 intron Nos - chr2L 10820629 intron Nos - chr2L_7_10820001 chr2L_10820001 RAL-439 205 chr2L 10852155 10852181 chr2L 10852264 10852285 9 107 8.5 10.5 9.5 0.9 130 chr2L 10852155 intron CG43129 + chr2L 10852220 intron CG43129 + chr2L 10852285 intron CG43129 + chr2L_9_10850001 chr2L_10850001 RAL-439 206 chr2L 10862867 10862883 chr2L 10864450 10864453 Rt1c 5 1577 0.0 2.0 1.0 2.5 1586 chr2L 10862867 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864453 intron CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-439 207 chr2L 10945057 10945093 chr2L 10945336 10945372 5 269 3.0 3.5 3.2 1.2 315 chr2L 10945057 intron dpr2 - chr2L 10945214 intron dpr2 - chr2L 10945372 intron dpr2 - chr2L_5_10945001 chr2L_10945001 RAL-439 208 chr2L 10946935 10946972 chr2L 10956170 10956207 roo 7 9229 1.0 4.5 2.8 1.8 9272 chr2L 10946935 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956207 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-439 209 chr2L 11039314 11039338 chr2L 11039398 11039406 7 87 3.0 5.5 4.2 1.3 92 chr2L 11039314 intron Samuel - chr2L 11039360 intron Samuel - chr2L 11039406 intron Samuel - chr2L_7_11035001 chr2L_11035001 RAL-439 210 chr2L 11130475 11130485 chr2L 11130585 11130589 6 109 13.0 4.0 8.5 0.6 114 chr2L 11130475 5` UTR RfC38 - chr2L 11130532 5` UTR RfC38 - chr2L 11130589 5` UTR RfC38 - chr2L_6_11130001 chr2L_11130001 RAL-439 211 chr2L 11130488 11130524 chr2L 11130583 11130634 15 105 5.5 4.0 4.8 2.6 146 chr2L 11130488 5` UTR RfC38 - chr2L 11130561 5` UTR RfC38 - chr2L 11130634 5` UTR RfC38 - chr2L_15_11130001 chr2L_11130001 RAL-439 212 chr2L 11174578 11174649 chr2L 11174649 11174746 4 74 0.0 0.0 0.0 4.0 168 chr2L 11174578 intron Ca-beta - chr2L 11174662 intron Ca-beta - chr2L 11174746 intron Ca-beta - chr2L_4_11170001 chr2L_11170001 RAL-439 213 chr2L 11193560 11193596 chr2L 11193663 11193710 11 102 0.0 8.0 4.0 2.2 150 chr2L 11193560 intron Ca-beta - chr2L 11193635 intron Ca-beta - chr2L 11193710 intron Ca-beta - chr2L_11_11190001 chr2L_11190001 RAL-439 214 chr2L 11224036 11224091 chr2L 11224167 11224222 12 127 3.0 1.0 2.0 4.0 186 chr2L 11224036 intron ab + chr2L 11224129 intron ab + chr2L 11224222 intron ab + chr2L_12_11220001 chr2L_11220001 RAL-439 215 chr2L 11292363 11292407 chr2L 11292460 11292503 14 98 3.0 5.5 4.2 2.7 140 chr2L 11292363 intergenic not near genes chr2L 11292433 intergenic not near genes chr2L 11292503 intergenic not near genes chr2L_14_11290001 chr2L_11290001 RAL-439 216 chr2L 11298812 11298853 chr2L 11298909 11298950 11 96 2.0 3.5 2.8 2.9 138 chr2L 11298812 intergenic not near genes chr2L 11298881 intergenic not near genes chr2L 11298950 intergenic not near genes chr2L_11_11295001 chr2L_11295001 RAL-439 217 chr2L 11356406 11356415 chr2L 11356517 11356518 5 107 7.5 4.0 5.8 0.7 112 chr2L 11356406 intergenic not near genes chr2L 11356462 intergenic not near genes chr2L 11356518 intergenic not near genes chr2L_5_11355001 chr2L_11355001 RAL-439 218 chr2L 11478661 11478711 chr2L 11478768 11478773 17 93 6.5 5.0 5.8 2.5 112 chr2L 11478661 intergenic not near genes chr2L 11478717 intergenic not near genes chr2L 11478773 intergenic not near genes chr2L_17_11475001 chr2L_11475001 RAL-439 219 chr2L 11496617 11496652 chr2L 11496714 11496750 11 91 1.5 4.5 3.0 2.8 133 chr2L 11496617 intergenic CG6488 - chr2L 11496684 intergenic CG6488 - chr2L 11496750 intergenic CG6488 - chr2L_11_11495001 chr2L_11495001 RAL-439 220 chr2L 11540594 11540616 chr2L 11548016 11548038 Tabor 9 7421 6.5 8.0 7.2 1.1 7444 chr2L 11540594 intergenic not near genes chr2L 11544316 intergenic not near genes chr2L 11548038 intergenic not near genes chr2L_9_11540001 chr2L_11540001 RAL-439 221 chr2L 11555415 11555427 chr2L 11555554 11555566 5 139 3.0 2.0 2.5 1.4 151 chr2L 11555415 intergenic not near genes chr2L 11555490 intergenic not near genes chr2L 11555566 intergenic not near genes chr2L_5_11555001 chr2L_11555001 RAL-439 222 chr2L 11563653 11563663 chr2L 11568872 11568876 copia 4 5217 0.0 15.5 7.8 0.5 5223 chr2L 11563653 intergenic not near genes chr2L 11566264 intergenic not near genes chr2L 11568876 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-439 223 chr2L 11589703 11589753 chr2L 11589807 11589850 7 99 2.5 0.5 1.5 2.8 147 chr2L 11589703 intron kek2 + chr2L 11589776 intron kek2 + chr2L 11589850 intron kek2 + chr2L_7_11585001 chr2L_11585001 RAL-439 224 chr2L 11631797 11631827 chr2L 11631904 11631930 7 107 0.0 6.5 3.2 1.7 133 chr2L 11631797 intergenic not near genes chr2L 11631864 intergenic not near genes chr2L 11631930 intergenic not near genes chr2L_7_11630001 chr2L_11630001 RAL-439 225 chr2L 11633777 11633818 chr2L 11633874 11633920 13 100 3.5 3.5 3.5 2.9 143 chr2L 11633777 intergenic not near genes chr2L 11633848 intergenic not near genes chr2L 11633920 intergenic not near genes chr2L_13_11630001 chr2L_11630001 RAL-439 226 chr2L 11733791 11733806 chr2L 11733877 11733898 4 96 2.0 1.0 1.5 1.6 107 chr2L 11733791 intergenic not near genes chr2L 11733844 intergenic not near genes chr2L 11733898 intergenic not near genes chr2L_4_11730001 chr2L_11730001 RAL-439 227 chr2L 11752844 11752893 chr2L 11753154 11753203 15 298 3.5 5.0 4.2 2.9 359 chr2L 11752844 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753203 exon CG42470 - chr2L_15_11750001 chr2L_11750001 RAL-439 228 chr2L 11755713 11755754 chr2L 11755813 11755854 22 93 9.0 7.5 8.2 2.4 141 chr2L 11755713 intergenic not near genes chr2L 11755784 intergenic not near genes chr2L 11755854 intergenic not near genes chr2L_22_11755001 chr2L_11755001 RAL-439 229 chr2L 11825686 11825698 chr2L 11825785 11825797 5 99 4.0 0.0 2.0 1.7 111 chr2L 11825686 intron Pde1c - chr2L 11825742 intron Pde1c - chr2L 11825797 intron Pde1c - chr2L_5_11825001 chr2L_11825001 RAL-439 230 chr2L 11841331 11841340 chr2L 11841448 11841457 4 116 7.5 0.0 3.8 0.8 126 chr2L 11841331 intron Pde1c - chr2L 11841394 intron Pde1c - chr2L 11841457 intron Pde1c - chr2L_4_11840001 chr2L_11840001 RAL-439 231 chr2L 11889408 11889453 chr2L 11889771 11889782 5 355 6.0 1.0 3.5 1.1 374 chr2L 11889408 intron Pde1c - chr2L 11889595 intron Pde1c - chr2L 11889782 intron Pde1c - chr2L_5_11885001 chr2L_11885001 RAL-439 232 chr2L 11892525 11892560 chr2L 11892634 11892669 9 107 2.0 3.0 2.5 2.6 144 chr2L 11892525 intron Pde1c - chr2L 11892597 intron Pde1c - chr2L 11892669 intron Pde1c - chr2L_9_11890001 chr2L_11890001 RAL-439 233 chr2L 11944431 11944451 chr2L 11944541 11944558 4 107 5.0 0.0 2.5 1.1 127 chr2L 11944431 intron Cry + chr2L 11944494 intron Cry + chr2L 11944558 intron Cry + chr2L_4_11940001 chr2L_11940001 RAL-439 234 chr2L 12031389 12031416 chr2L 12031465 12031517 10 94 4.5 5.0 4.8 1.7 128 chr2L 12031389 intron dmGlut + chr2L 12031453 intron dmGlut + chr2L 12031517 intron dmGlut + chr2L_10_12030001 chr2L_12030001 RAL-439 235 chr2L 12067339 12067351 chr2L 12074393 12074423 297 5 7064 7.0 6.5 6.8 0.6 7084 chr2L 12067339 intergenic not near genes chr2L 12070881 intergenic not near genes chr2L 12074423 intergenic not near genes chr2L_5_12070001 chr2L_12070001 RAL-439 236 chr2L 12121880 12121908 chr2L 12121982 12122010 11 97 5.0 8.0 6.5 1.5 130 chr2L 12121880 intron CG17211 + chr2L 12121945 intron CG17211 + chr2L 12122010 intron CG17211 + chr2L_11_12120001 chr2L_12120001 RAL-439 237 chr2L 12121910 12122161 chr2L 12121981 12122264 13 94 4.0 8.0 6.0 1.9 354 chr2L 12121910 intron CG17211 + chr2L 12122087 intron CG17211 + chr2L 12122264 intron CG17211 + chr2L_13_12120001 chr2L_12120001 RAL-439 238 chr2L 12123227 12123251 chr2L 12123332 12123356 5 104 6.0 2.0 4.0 1.0 129 chr2L 12123227 intron CG17211 + chr2L 12123292 intron CG17211 + chr2L 12123356 intron CG17211 + chr2L_5_12120001 chr2L_12120001 RAL-439 239 chr2L 12192346 12192368 chr2L 12192491 12192505 6 142 2.0 7.5 4.8 1.0 159 chr2L 12192346 intron aret + chr2L 12192426 intron aret + chr2L 12192505 intron aret + chr2L_6_12190001 chr2L_12190001 RAL-439 240 chr2L 12267291 12267325 chr2L 12267391 12267409 7 95 7.5 2.0 4.8 1.2 118 chr2L 12267291 intron aret + chr2L 12267350 intron aret + chr2L 12267409 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-439 241 chr2L 12272146 12272195 chr2L 12272242 12272291 15 94 4.0 5.0 4.5 2.7 145 chr2L 12272146 intron aret + chr2L 12272218 intron aret + chr2L 12272291 intron aret + chr2L_15_12270001 chr2L_12270001 RAL-439 242 chr2L 12294230 12294263 chr2L 12294332 12294365 11 99 5.0 0.0 2.5 3.1 135 chr2L 12294230 intron aret + chr2L 12294298 intron aret + chr2L 12294365 intron aret + chr2L_11_12290001 chr2L_12290001 RAL-439 243 chr2L 12305389 12305425 chr2L 12305497 12305533 8 106 5.0 1.0 3.0 2.0 144 chr2L 12305389 intron aret + chr2L 12305461 intron aret + chr2L 12305533 intron aret + chr2L_8_12305001 chr2L_12305001 RAL-439 244 chr2L 12309529 12309578 chr2L 12309624 12309650 8 84 2.5 8.0 5.2 1.3 121 chr2L 12309529 intron aret + chr2L 12309590 intron aret + chr2L 12309650 intron aret + chr2L_8_12305001 chr2L_12305001 RAL-439 245 chr2L 12340786 12340807 chr2L 12340876 12340917 6 106 0.5 4.5 2.5 1.7 131 chr2L 12340786 intergenic not near genes chr2L 12340852 intergenic not near genes chr2L 12340917 intergenic not near genes chr2L_6_12340001 chr2L_12340001 RAL-439 246 chr2L 12466213 12466242 chr2L 12466319 12466328 6 98 1.5 0.5 1.0 3.0 115 chr2L 12466213 intron bun - chr2L 12466270 intron bun - chr2L 12466328 intron bun - chr2L_6_12465001 chr2L_12465001 RAL-439 247 chr2L 12487892 12487920 chr2L 12487966 12488017 11 90 4.5 4.5 4.5 2.0 125 chr2L 12487892 intron bun - chr2L 12487954 intron bun - chr2L 12488017 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-439 248 chr2L 12529237 12529447 chr2L 12529378 12529518 14 112 1.0 0.0 0.5 9.3 281 chr2L 12529237 intron bun - chr2L 12529378 intron bun - chr2L 12529518 intron bun - chr2L_14_12525001 chr2L_12525001 RAL-439 249 chr2L 12598193 12598199 chr2L 12598284 12598296 4 96 6.0 5.5 5.8 0.6 103 chr2L 12598193 intron nub + chr2L 12598244 intron nub + chr2L 12598296 intron nub + chr2L_4_12595001 chr2L_12595001 RAL-439 250 chr2L 12731038 12731089 chr2L 12735825 12735870 F-element 13 4781 3.0 2.0 2.5 3.7 4832 chr2L 12731038 intron MRP + chr2L 12733454 intron MRP + chr2L 12735870 intron MRP + chr2L_13_12730001 chr2L_12730001 RAL-439 251 chr2L 12739165 12739198 chr2L 12743966 12743999 Doc 7 4801 3.0 3.0 3.0 1.8 4834 chr2L 12739165 exon MRP + chr2L 12741582 intron MRP + chr2L 12743999 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-439 252 chr2L 12751295 12751326 chr2L 12751398 12751407 4 95 3.5 1.0 2.2 1.2 112 chr2L 12751295 intergenic not near genes chr2L 12751351 intergenic not near genes chr2L 12751407 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-439 253 chr2L 12751327 12751340 chr2L 12751392 12751443 4 87 3.0 0.5 1.8 1.4 116 chr2L 12751327 intergenic not near genes chr2L 12751385 intergenic not near genes chr2L 12751443 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-439 254 chr2L 12760231 12760257 chr2L 12760347 12760373 10 116 5.5 3.0 4.2 1.9 142 chr2L 12760231 intergenic CG15483 - chr2L 12760302 intergenic CG15483 - chr2L 12760373 3` UTR CG15483 - chr2L_10_12760001 chr2L_12760001 RAL-439 255 chr2L 12781786 12781815 chr2L 12789256 12789285 Quasimodo 9 7464 3.5 4.5 4.0 1.8 7499 chr2L 12781786 intergenic not near genes chr2L 12785536 intergenic not near genes chr2L 12789285 intergenic not near genes chr2L_9_12785001 chr2L_12785001 RAL-439 256 chr2L 12791589 12791630 chr2L 12795283 12795325 F-element 13 3690 2.0 11.0 6.5 1.7 3736 chr2L 12791589 intergenic not near genes chr2L 12793457 intergenic not near genes chr2L 12795325 intergenic not near genes chr2L_13_12790001 chr2L_12790001 RAL-439 257 chr2L 12861686 12861722 chr2L 12863173 12863199 hobo 5 1485 0.5 1.0 0.8 2.8 1513 chr2L 12861686 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863199 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-439 258 chr2L 12905466 12905507 chr2L 12905565 12905581 10 98 2.5 3.0 2.8 2.6 115 chr2L 12905466 intergenic not near genes chr2L 12905524 intergenic not near genes chr2L 12905581 intergenic not near genes chr2L_10_12905001 chr2L_12905001 RAL-439 259 chr2L 13036260 13036262 chr2L 13036493 13036513 X-element 4 246 3.5 0.5 2.0 1.3 253 chr2L 13036260 intron CG9932 - chr2L 13036386 intron CG9932 - chr2L 13036513 intron CG9932 - chr2L_4_13035001 chr2L_13035001 RAL-439 260 chr2L 13230628 13230652 chr2L 13231020 13231036 8 391 5.5 8.0 6.8 1.0 408 chr2L 13230628 intergenic CG16815 + chr2L 13230832 intergenic CG16815 + chr2L 13231036 intergenic CG16815 + chr2L_8_13230001 chr2L_13230001 RAL-439 261 chr2L 13266375 13266412 chr2L 13266474 13266504 11 100 1.5 5.5 3.5 2.4 129 chr2L 13266375 intron CG44085 + chr2L 13266440 intron CG44085 + chr2L 13266504 intron CG44085 + chr2L_11_13265001 chr2L_13265001 RAL-439 262 chr2L 13294917 13294933 chr2L 13295013 13295020 5 90 11.0 0.0 5.5 0.8 103 chr2L 13294917 intron CG31729 + chr2L 13294968 intron CG31729 + chr2L 13295020 intron CG31729 + chr2L_5_13290001 chr2L_13290001 RAL-439 263 chr2L 13294936 13294967 chr2L 13295012 13295018 4 66 5.0 0.0 2.5 1.1 82 chr2L 13294936 intron CG31729 + chr2L 13294977 intron CG31729 + chr2L 13295018 intron CG31729 + chr2L_4_13290001 chr2L_13290001 RAL-439 264 chr2L 13351801 13351811 chr2L 13351907 13351917 8 106 5.0 3.0 4.0 1.6 116 chr2L 13351801 exon CG9395 - chr2L 13351859 intron CG9395 - chr2L 13351917 intron CG9395 - chr2L_8_13350001 chr2L_13350001 RAL-439 265 chr2L 13351815 13351851 chr2L 13351905 13351942 17 101 2.0 3.0 2.5 4.9 127 chr2L 13351815 exon CG9395 - chr2L 13351878 intron CG9395 - chr2L 13351942 exon CG9395 - chr2L_17_13350001 chr2L_13350001 RAL-439 266 chr2L 13405643 13405678 chr2L 13410450 13410495 Doc 14 4805 2.0 4.5 3.2 3.3 4852 chr2L 13405643 exon CG7110 + chr2L 13408069 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-439 267 chr2L 13449445 13449492 chr2L 13456901 13456936 Quasimodo 14 7446 2.5 3.0 2.8 3.7 7491 chr2L 13449445 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453190 intron CG42784 + chr2L 13456936 intron CG42784 + chr2L_14_13450001 chr2L_13450001 RAL-439 268 chr2L 13481450 13481468 chr2L 13482055 13482095 jockey 10 622 5.0 3.5 4.2 1.9 645 chr2L 13481450 intron CG42784 + chr2L 13481772 intron CG42784 + chr2L 13482095 intron CG42784 + chr2L_10_13480001 chr2L_13480001 RAL-439 269 chr2L 13528697 13528718 chr2L 13528789 13528790 10 92 1.0 2.5 1.8 3.6 93 chr2L 13528697 intron B4 - chr2L 13528744 intron B4 - chr2L 13528790 intron B4 - chr2L_10_13525001 chr2L_13525001 RAL-439 270 chr2L 13560392 13560408 chr2L 13565229 13565245 F-element 4 4836 8.0 2.0 5.0 0.7 4853 chr2L 13560392 intron kuz + chr2L 13562818 intron kuz + chr2L 13565245 intron kuz + chr2L_4_13560001 chr2L_13560001 RAL-439 271 chr2L 13570211 13570252 chr2L 13570344 13570385 4 133 3.5 4.5 4.0 0.8 174 chr2L 13570211 intron kuz + chr2L 13570298 intron kuz + chr2L 13570385 intron kuz + chr2L_4_13570001 chr2L_13570001 RAL-439 272 chr2L 13594977 13595017 chr2L 13595067 13595116 22 95 6.5 5.5 6.0 3.1 139 chr2L 13594977 intron kuz + chr2L 13595046 intron kuz + chr2L 13595116 intron kuz + chr2L_22_13595001 chr2L_13595001 RAL-439 273 chr2L 13713535 13713557 chr2L 13713631 13713643 4 94 9.0 2.0 5.5 0.6 108 chr2L 13713535 intron CG31814 - chr2L 13713589 intron CG31814 - chr2L 13713643 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-439 274 chr2L 13749197 13749208 chr2L 13749300 13749311 8 102 0.5 0.0 0.2 6.7 114 chr2L 13749197 intron,intron CR44846 +,TM9SF4 + chr2L 13749254 intron,intron CR44846 +,TM9SF4 + chr2L 13749311 intron,intron CR44846 +,TM9SF4 + chr2L_8_13745001 chr2L_13745001 RAL-439 275 chr2L 13752799 13752826 chr2L 13752932 13752938 4 128 2.0 4.0 3.0 1.0 139 chr2L 13752799 intron,intron CR44846 +,TM9SF4 + chr2L 13752868 intron,intron CR44846 +,TM9SF4 + chr2L 13752938 intron,intron CR44846 +,TM9SF4 + chr2L_4_13750001 chr2L_13750001 RAL-439 276 chr2L 13800172 13800203 chr2L 13800285 13800312 9 119 6.0 5.0 5.5 1.4 140 chr2L 13800172 intergenic Sec71 + chr2L 13800242 intergenic not near genes chr2L 13800312 intergenic not near genes chr2L_9_13800001 chr2L_13800001 RAL-439 277 chr2L 13842554 13842592 chr2L 13842651 13842689 12 96 6.0 5.0 5.5 1.8 135 chr2L 13842554 intron CenG1A + chr2L 13842622 intron CenG1A + chr2L 13842689 intron CenG1A + chr2L_12_13840001 chr2L_13840001 RAL-439 278 chr2L 13853078 13853117 chr2L 13862234 13862271 roo 11 9164 5.0 10.0 7.5 1.3 9193 chr2L 13853078 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862271 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-439 279 chr2L 13935288 13935301 chr2L 13935440 13935467 4 163 0.0 6.0 3.0 1.0 179 chr2L 13935288 intron Ance-3 + chr2L 13935378 intron Ance-3 + chr2L 13935467 intron Ance-3 + chr2L_4_13935001 chr2L_13935001 RAL-439 280 chr2L 13981502 13981546 chr2L 13981613 13981657 5 108 3.0 4.5 3.8 1.0 155 chr2L 13981502 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981657 intron NimC2 + chr2L_5_13980001 chr2L_13980001 RAL-439 281 chr2L 14102840 14102858 chr2L 14102925 14102959 6 92 0.0 0.0 0.0 6.0 119 chr2L 14102840 intergenic not near genes chr2L 14102900 intergenic not near genes chr2L 14102959 intergenic not near genes chr2L_6_14100001 chr2L_14100001 RAL-439 282 chr2L 14151591 14151629 chr2L 14151670 14151720 8 87 1.5 2.0 1.8 2.9 129 chr2L 14151591 intron CG17341 + chr2L 14151656 intron CG17341 + chr2L 14151720 intron CG17341 + chr2L_8_14150001 chr2L_14150001 RAL-439 283 chr2L 14160665 14160719 chr2L 14160771 14160825 16 100 5.5 4.5 5.0 2.7 160 chr2L 14160665 intergenic CG17341 +,CG43332 - chr2L 14160745 intergenic CG17341 +,CG43332 - chr2L 14160825 intergenic CG17341 +,CG43332 - chr2L_16_14160001 chr2L_14160001 RAL-439 284 chr2L 14257128 14257153 chr2L 14257753 14257766 6 617 4.5 3.5 4.0 1.2 638 chr2L 14257128 intergenic not near genes chr2L 14257447 intergenic not near genes chr2L 14257766 intergenic not near genes chr2L_6_14255001 chr2L_14255001 RAL-439 285 chr2L 14257158 14257171 chr2L 14257751 14257781 4 607 2.5 3.0 2.8 1.1 623 chr2L 14257158 intergenic not near genes chr2L 14257470 intergenic not near genes chr2L 14257781 intergenic not near genes chr2L_4_14255001 chr2L_14255001 RAL-439 286 chr2L 14293343 14293393 chr2L 14293443 14293493 14 94 3.0 5.0 4.0 2.8 150 chr2L 14293343 intron,3` UTR wb +,CR43640 - chr2L 14293418 intron,3` UTR wb +,CR43640 - chr2L 14293493 intron,3` UTR wb +,CR43640 - chr2L_14_14290001 chr2L_14290001 RAL-439 287 chr2L 14374765 14374800 chr2L 14374876 14374906 13 107 2.5 3.0 2.8 3.4 141 chr2L 14374765 intergenic not near genes chr2L 14374836 intergenic not near genes chr2L 14374906 intergenic not near genes chr2L_13_14370001 chr2L_14370001 RAL-439 288 chr2L 14440092 14440111 chr2L 14440206 14440215 7 111 5.0 7.0 6.0 1.0 123 chr2L 14440092 intergenic not near genes chr2L 14440154 intergenic not near genes chr2L 14440215 intergenic not near genes chr2L_7_14440001 chr2L_14440001 RAL-439 289 chr2L 14440112 14440122 chr2L 14440199 14440236 5 104 2.5 4.0 3.2 1.2 124 chr2L 14440112 intergenic not near genes chr2L 14440174 intergenic not near genes chr2L 14440236 intergenic not near genes chr2L_5_14440001 chr2L_14440001 RAL-439 290 chr2L 14462709 14462822 chr2L 14462816 14462938 5 110 0.0 0.0 0.0 5.0 229 chr2L 14462709 intergenic not near genes chr2L 14462824 intergenic not near genes chr2L 14462938 intergenic not near genes chr2L_5_14460001 chr2L_14460001 RAL-439 291 chr2L 14465587 14465611 chr2L 14469051 14469108 hopper2 6 3490 6.5 0.0 3.2 1.4 3521 chr2L 14465587 intergenic not near genes chr2L 14467348 intergenic not near genes chr2L 14469108 intergenic not near genes chr2L_6_14465001 chr2L_14465001 RAL-439 292 chr2L 14529088 14529119 chr2L 14529183 14529188 5 91 2.0 2.5 2.2 1.6 100 chr2L 14529088 intergenic not near genes chr2L 14529138 intergenic not near genes chr2L 14529188 intergenic not near genes chr2L_5_14525001 chr2L_14525001 RAL-439 293 chr2L 14570706 14570718 chr2L 14570806 14570819 5 100 0.0 2.0 1.0 2.5 113 chr2L 14570706 intergenic not near genes chr2L 14570762 intergenic not near genes chr2L 14570819 intergenic not near genes chr2L_5_14570001 chr2L_14570001 RAL-439 294 chr2L 14576694 14576728 chr2L 14576802 14576811 4 98 2.0 2.0 2.0 1.3 117 chr2L 14576694 5` UTR CR44856 + chr2L 14576752 5` UTR CR44856 + chr2L 14576811 5` UTR CR44856 + chr2L_4_14575001 chr2L_14575001 RAL-439 295 chr2L 14585548 14585575 chr2L 14585750 14585751 5 195 4.5 4.5 4.5 0.9 203 chr2L 14585548 intergenic not near genes chr2L 14585650 intergenic not near genes chr2L 14585751 intergenic not near genes chr2L_5_14585001 chr2L_14585001 RAL-439 296 chr2L 14588374 14588414 chr2L 14588542 14588576 9 160 4.5 2.5 3.5 2.0 202 chr2L 14588374 intergenic CG42680 - chr2L 14588475 intergenic CG42680 - chr2L 14588576 intergenic CG42680 - chr2L_9_14585001 chr2L_14585001 RAL-439 297 chr2L 14624535 14624559 chr2L 14624634 14624658 6 99 5.5 7.0 6.2 0.8 123 chr2L 14624535 intron osp - chr2L 14624596 intron osp - chr2L 14624658 intron osp - chr2L_6_14620001 chr2L_14620001 RAL-439 298 chr2L 14694249 14694289 chr2L 14694377 14694412 12 139 5.0 4.5 4.8 2.1 163 chr2L 14694249 intergenic not near genes chr2L 14694330 intergenic not near genes chr2L 14694412 intergenic not near genes chr2L_12_14690001 chr2L_14690001 RAL-439 299 chr2L 14803888 14803912 chr2L 14809096 14809135 copia 6 5211 3.5 5.0 4.2 1.2 5247 chr2L 14803888 intergenic not near genes chr2L 14806512 intergenic not near genes chr2L 14809135 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-439 300 chr2L 14849270 14849310 chr2L 14849366 14849420 20 102 4.0 1.0 2.5 5.7 150 chr2L 14849270 intron CG15279 - chr2L 14849345 intron CG15279 - chr2L 14849420 intron CG15279 - chr2L_20_14845001 chr2L_14845001 RAL-439 301 chr2L 14889957 14889979 chr2L 14890378 14890424 jockey 8 441 2.5 2.5 2.5 2.3 467 chr2L 14889957 intergenic not near genes chr2L 14890190 intergenic not near genes chr2L 14890424 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-439 302 chr2L 14984388 14984397 chr2L 14991977 14992009 opus 6 7601 2.5 2.5 2.5 1.7 7621 chr2L 14984388 intron mol - chr2L 14988198 intron mol - chr2L 14992009 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-439 303 chr2L 15003527 15003566 chr2L 15003631 15003659 6 98 7.0 3.0 5.0 1.0 132 chr2L 15003527 intergenic not near genes chr2L 15003593 intergenic not near genes chr2L 15003659 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-439 304 chr2L 15021398 15021427 chr2L 15021625 15021637 8 221 1.5 0.0 0.8 4.4 239 chr2L 15021398 intron GABA-B-R1 + chr2L 15021518 intron GABA-B-R1 + chr2L 15021637 intron GABA-B-R1 + chr2L_8_15020001 chr2L_15020001 RAL-439 305 chr2L 15044704 15044729 chr2L 15044800 15044825 9 92 9.0 1.5 5.2 1.5 121 chr2L 15044704 intergenic ck - chr2L 15044764 intergenic ck - chr2L 15044825 intergenic ck - chr2L_9_15040001 chr2L_15040001 RAL-439 306 chr2L 15044730 15044734 chr2L 15044790 15044827 4 82 6.5 1.5 4.0 0.8 97 chr2L 15044730 intergenic ck - chr2L 15044778 intergenic ck - chr2L 15044827 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-439 307 chr2L 15077920 15078098 chr2L 15078017 15078171 6 87 2.0 8.0 5.0 1.0 251 chr2L 15077920 intron CG15270 + chr2L 15078046 intron CG15270 + chr2L 15078171 intron CG15270 + chr2L_6_15075001 chr2L_15075001 RAL-439 308 chr2L 15080887 15080912 chr2L 15081000 15081028 5 109 8.5 1.0 4.8 0.9 141 chr2L 15080887 intron CG15270 + chr2L 15080958 intron CG15270 + chr2L 15081028 intron CG15270 + chr2L_5_15080001 chr2L_15080001 RAL-439 309 chr2L 15080916 15080933 chr2L 15080994 15081049 6 109 4.5 0.5 2.5 1.7 133 chr2L 15080916 intron CG15270 + chr2L 15080982 intron CG15270 + chr2L 15081049 intron CG15270 + chr2L_6_15080001 chr2L_15080001 RAL-439 310 chr2L 15083920 15083975 chr2L 15084897 15084897 13 962 3.5 5.5 4.5 2.4 977 chr2L 15083920 intron CG15270 + chr2L 15084408 intron CG15270 + chr2L 15084897 intron CG15270 + chr2L_13_15080001 chr2L_15080001 RAL-439 311 chr2L 15138756 15138799 chr2L 15138859 15138906 4 103 0.0 4.0 2.0 1.3 150 chr2L 15138756 intergenic not near genes chr2L 15138831 intergenic not near genes chr2L 15138906 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-439 312 chr2L 15163922 15163933 chr2L 15164019 15164030 5 97 3.0 4.0 3.5 1.1 108 chr2L 15163922 intron CG4168 - chr2L 15163976 intron CG4168 - chr2L 15164030 intron CG4168 - chr2L_5_15160001 chr2L_15160001 RAL-439 313 chr2L 15324599 15324623 chr2L 15324672 15324721 4 82 4.5 3.0 3.8 0.8 122 chr2L 15324599 intergenic not near genes chr2L 15324660 intergenic not near genes chr2L 15324721 intergenic not near genes chr2L_4_15320001 chr2L_15320001 RAL-439 314 chr2L 15342332 15342378 chr2L 15342424 15342480 11 100 5.0 4.5 4.8 1.9 148 chr2L 15342332 intergenic not near genes chr2L 15342406 intergenic not near genes chr2L 15342480 intergenic not near genes chr2L_11_15340001 chr2L_15340001 RAL-439 315 chr2L 15446029 15446078 chr2L 15453518 15453567 blood 14 7487 4.5 4.0 4.2 2.7 7538 chr2L 15446029 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453567 intergenic not near genes chr2L_14_15445001 chr2L_15445001 RAL-439 316 chr2L 15482584 15482602 chr2L 15482724 15482758 5 147 5.0 6.5 5.8 0.7 174 chr2L 15482584 intergenic not near genes chr2L 15482671 intergenic not near genes chr2L 15482758 intergenic not near genes chr2L_5_15480001 chr2L_15480001 RAL-439 317 chr2L 15499894 15499940 chr2L 15500002 15500047 12 98 1.5 4.5 3.0 3.0 153 chr2L 15499894 intron lace + chr2L 15499970 intron lace + chr2L 15500047 intron lace + chr2L_12_15495001 chr2L_15495001 RAL-439 318 chr2L 15586398 15586429 chr2L 15593465 15593496 297 12 7067 9.5 4.0 6.8 1.5 7098 chr2L 15586398 intergenic not near genes chr2L 15589947 intergenic not near genes chr2L 15593496 intergenic not near genes chr2L_12_15585001 chr2L_15585001 RAL-439 319 chr2L 15598748 15598800 chr2L 15598847 15598899 8 99 2.0 0.5 1.2 3.6 151 chr2L 15598748 intergenic not near genes chr2L 15598824 intergenic not near genes chr2L 15598899 intergenic not near genes chr2L_8_15595001 chr2L_15595001 RAL-439 320 chr2L 15734295 15734324 chr2L 15734389 15734422 8 97 0.0 6.5 3.2 1.9 127 chr2L 15734295 intron CycE - chr2L 15734358 intron CycE - chr2L 15734422 intron CycE - chr2L_8_15730001 chr2L_15730001 RAL-439 321 chr2L 15735391 15735396 chr2L 15735571 15735576 4 180 5.0 3.0 4.0 0.8 185 chr2L 15735391 intron CycE - chr2L 15735484 intron CycE - chr2L 15735576 intron CycE - chr2L_4_15735001 chr2L_15735001 RAL-439 322 chr2L 15735400 15735412 chr2L 15735569 15735582 4 174 5.0 3.0 4.0 0.8 182 chr2L 15735400 intron CycE - chr2L 15735491 intron CycE - chr2L 15735582 intron CycE - chr2L_4_15735001 chr2L_15735001 RAL-439 323 chr2L 15947728 15947754 chr2L 15948372 15948382 7 638 0.5 1.5 1.0 3.5 654 chr2L 15947728 intron beat-Ib - chr2L 15948055 intron beat-Ib - chr2L 15948382 intron beat-Ib - chr2L_7_15945001 chr2L_15945001 RAL-439 324 chr2L 15947758 15947770 chr2L 15948366 15948399 5 615 0.5 1.5 1.0 2.5 641 chr2L 15947758 intron beat-Ib - chr2L 15948078 intron beat-Ib - chr2L 15948399 intron beat-Ib - chr2L_5_15945001 chr2L_15945001 RAL-439 325 chr2L 15950363 15950380 chr2L 15950461 15950478 7 96 1.5 4.0 2.8 1.8 115 chr2L 15950363 intron beat-Ib - chr2L 15950420 intron beat-Ib - chr2L 15950478 intron beat-Ib - chr2L_7_15950001 chr2L_15950001 RAL-439 326 chr2L 15950382 15950409 chr2L 15950460 15950492 7 85 1.5 4.0 2.8 1.8 110 chr2L 15950382 intron beat-Ib - chr2L 15950437 intron beat-Ib - chr2L 15950492 intron beat-Ib - chr2L_7_15950001 chr2L_15950001 RAL-439 327 chr2L 15963755 15963783 chr2L 15964372 15964395 6 612 4.5 1.0 2.8 1.6 640 chr2L 15963755 intergenic not near genes chr2L 15964075 intergenic not near genes chr2L 15964395 intergenic not near genes chr2L_6_15960001 chr2L_15960001 RAL-439 328 chr2L 16008706 16008724 chr2L 16008792 16008817 8 94 4.0 7.0 5.5 1.2 111 chr2L 16008706 intron beat-Ic + chr2L 16008762 intron beat-Ic + chr2L 16008817 intron beat-Ic + chr2L_8_16005001 chr2L_16005001 RAL-439 329 chr2L 16017632 16017657 chr2L 16017728 16017753 5 93 1.5 4.5 3.0 1.2 121 chr2L 16017632 intron beat-Ic + chr2L 16017692 intron beat-Ic + chr2L 16017753 intron beat-Ic + chr2L_5_16015001 chr2L_16015001 RAL-439 330 chr2L 16027378 16027396 chr2L 16027474 16027492 4 96 6.5 3.0 4.8 0.7 114 chr2L 16027378 intron beat-Ic + chr2L 16027435 intron beat-Ic + chr2L 16027492 intron beat-Ic + chr2L_4_16025001 chr2L_16025001 RAL-439 331 chr2L 16027397 16027423 chr2L 16027473 16027507 6 89 3.5 3.0 3.2 1.4 110 chr2L 16027397 intron beat-Ic + chr2L 16027452 intron beat-Ic + chr2L 16027507 intron beat-Ic + chr2L_6_16025001 chr2L_16025001 RAL-439 332 chr2L 16045433 16045469 chr2L 16045603 16045639 7 170 3.5 0.0 1.8 2.5 206 chr2L 16045433 intron,intron BicC +,CG45084 + chr2L 16045536 intron,intron BicC +,CG45084 + chr2L 16045639 intron,intron BicC +,CG45084 + chr2L_7_16045001 chr2L_16045001 RAL-439 333 chr2L 16058107 16058152 chr2L 16058268 16058313 19 155 4.0 5.0 4.5 3.5 206 chr2L 16058107 intron beat-Ia + chr2L 16058210 intron beat-Ia + chr2L 16058313 intron beat-Ia + chr2L_19_16055001 chr2L_16055001 RAL-439 334 chr2L 16115507 16115544 chr2L 16115603 16115638 13 93 8.0 6.0 7.0 1.6 131 chr2L 16115507 intergenic not near genes chr2L 16115572 intergenic not near genes chr2L 16115638 intergenic not near genes chr2L_13_16115001 chr2L_16115001 RAL-439 335 chr2L 16141164 16141196 chr2L 16146379 16146383 copia 17 5220 2.5 3.0 2.8 4.5 5219 chr2L 16141164 intergenic not near genes chr2L 16143774 intergenic not near genes chr2L 16146383 intergenic not near genes chr2L_17_16140001 chr2L_16140001 RAL-439 336 chr2L 16354758 16354785 chr2L 16354870 16354872 7 108 2.5 3.0 2.8 1.8 114 chr2L 16354758 intergenic CaBP1 -,CG4455 + chr2L 16354815 intergenic CaBP1 -,CG4455 + chr2L 16354872 intergenic CaBP1 -,CG4455 + chr2L_7_16350001 chr2L_16350001 RAL-439 337 chr2L 16363923 16363970 chr2L 16364189 16364209 9 260 6.5 2.5 4.5 1.6 286 chr2L 16363923 intergenic not near genes chr2L 16364066 intergenic not near genes chr2L 16364209 intergenic not near genes chr2L_9_16360001 chr2L_16360001 RAL-439 338 chr2L 16365444 16365465 chr2L 16365565 16365597 5 127 1.5 0.0 0.8 2.8 153 chr2L 16365444 intergenic jhamt + chr2L 16365520 intergenic jhamt + chr2L 16365597 intergenic jhamt + chr2L_5_16365001 chr2L_16365001 RAL-439 339 chr2L 16391789 16391823 chr2L 16391880 16391909 9 91 3.5 5.5 4.5 1.6 120 chr2L 16391789 intergenic not near genes chr2L 16391849 intergenic not near genes chr2L 16391909 intergenic not near genes chr2L_9_16390001 chr2L_16390001 RAL-439 340 chr2L 16417153 16417194 chr2L 16417252 16417281 12 93 1.5 1.0 1.2 5.5 128 chr2L 16417153 intron CG5888 - chr2L 16417217 intron CG5888 - chr2L 16417281 intron CG5888 - chr2L_12_16415001 chr2L_16415001 RAL-439 341 chr2L 16504985 16505008 chr2L 16505100 16505138 14 128 0.0 5.5 2.8 3.7 153 chr2L 16504985 intron Tpr2 + chr2L 16505062 intron Tpr2 + chr2L 16505138 intron Tpr2 + chr2L_14_16505001 chr2L_16505001 RAL-439 342 chr2L 16511951 16511983 chr2L 16519084 16519109 HMS-Beagle 8 7138 4.0 3.0 3.5 1.8 7158 chr2L 16511951 intron CG5953 - chr2L 16515530 intron CG5953 - chr2L 16519109 intron CG5953 - chr2L_8_16515001 chr2L_16515001 RAL-439 343 chr2L 16616571 16616608 chr2L 16616664 16616692 6 87 1.5 4.5 3.0 1.5 121 chr2L 16616571 intron CG42389 + chr2L 16616632 intron CG42389 + chr2L 16616692 intron CG42389 + chr2L_6_16615001 chr2L_16615001 RAL-439 344 chr2L 16670413 16670449 chr2L 16670495 16670546 11 92 6.5 4.0 5.2 1.8 133 chr2L 16670413 intron Trpgamma - chr2L 16670480 intron Trpgamma - chr2L 16670546 intron Trpgamma - chr2L_11_16670001 chr2L_16670001 RAL-439 345 chr2L 16693897 16693939 chr2L 16693998 16694001 11 94 5.5 3.0 4.2 2.1 104 chr2L 16693897 intron grp + chr2L 16693949 intron grp + chr2L 16694001 intron grp + chr2L_11_16690001 chr2L_16690001 RAL-439 346 chr2L 16697053 16697083 chr2L 16697262 16697268 11 209 2.5 1.0 1.8 3.9 215 chr2L 16697053 intron grp + chr2L 16697160 intron grp + chr2L 16697268 intron grp + chr2L_11_16695001 chr2L_16695001 RAL-439 347 chr2L 16709093 16709103 chr2L 16709167 16709198 5 89 2.0 6.0 4.0 1.0 105 chr2L 16709093 intron CG31808 - chr2L 16709146 intron CG31808 - chr2L 16709198 intron CG31808 - chr2L_5_16705001 chr2L_16705001 RAL-439 348 chr2L 16867006 16867036 chr2L 16867120 16867151 9 110 2.0 4.0 3.0 2.2 145 chr2L 16867006 intergenic not near genes chr2L 16867078 intergenic not near genes chr2L 16867151 intergenic not near genes chr2L_9_16865001 chr2L_16865001 RAL-439 349 chr2L 16944189 16944229 chr2L 16944295 16944325 10 100 1.5 1.0 1.2 4.5 136 chr2L 16944189 intergenic not near genes chr2L 16944257 intergenic CR43053 - chr2L 16944325 intergenic CR43053 - chr2L_10_16940001 chr2L_16940001 RAL-439 350 chr2L 16958086 16958140 chr2L 16962894 16962905 Doc 16 4801 5.0 3.0 4.0 3.2 4819 chr2L 16958086 intergenic not near genes chr2L 16960496 intergenic not near genes chr2L 16962905 intergenic not near genes chr2L_16_16960001 chr2L_16960001 RAL-439 351 chr2L 16993591 16993632 chr2L 16993693 16993733 10 103 4.0 5.0 4.5 1.8 142 chr2L 16993591 3` UTR beat-IIIb + chr2L 16993662 3` UTR beat-IIIb + chr2L 16993733 3` UTR beat-IIIb + chr2L_10_16990001 chr2L_16990001 RAL-439 352 chr2L 17005424 17005429 chr2L 17005511 17005544 4 95 1.5 3.5 2.5 1.1 120 chr2L 17005424 intergenic not near genes chr2L 17005484 intergenic not near genes chr2L 17005544 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-439 353 chr2L 17018687 17018729 chr2L 17018783 17018825 14 92 3.5 0.0 1.8 5.0 138 chr2L 17018687 intergenic not near genes chr2L 17018756 intergenic not near genes chr2L 17018825 intergenic not near genes chr2L_14_17015001 chr2L_17015001 RAL-439 354 chr2L 17032486 17032519 chr2L 17032591 17032622 7 100 2.5 1.0 1.8 2.5 136 chr2L 17032486 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032622 intergenic not near genes chr2L_7_17030001 chr2L_17030001 RAL-439 355 chr2L 17052400 17052437 chr2L 17052532 17052569 6 129 6.0 2.5 4.2 1.2 169 chr2L 17052400 intergenic not near genes chr2L 17052484 intergenic not near genes chr2L 17052569 intergenic not near genes chr2L_6_17050001 chr2L_17050001 RAL-439 356 chr2L 17053266 17053311 chr2L 17053696 17053741 4 428 0.5 1.5 1.0 2.0 475 chr2L 17053266 intergenic not near genes chr2L 17053504 intergenic not near genes chr2L 17053741 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-439 357 chr2L 17069242 17069286 chr2L 17069334 17069383 7 93 2.5 3.5 3.0 1.8 141 chr2L 17069242 intergenic not near genes chr2L 17069312 intergenic not near genes chr2L 17069383 intergenic not near genes chr2L_7_17065001 chr2L_17065001 RAL-439 358 chr2L 17129839 17129864 chr2L 17129954 17129964 5 117 4.5 7.0 5.8 0.7 125 chr2L 17129839 intergenic not near genes chr2L 17129902 intergenic not near genes chr2L 17129964 intergenic not near genes chr2L_5_17125001 chr2L_17125001 RAL-439 359 chr2L 17158719 17158764 chr2L 17158841 17158874 7 120 0.5 3.0 1.8 2.5 155 chr2L 17158719 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158796 intron,intron CG34106 +,beat-IIIa + chr2L 17158874 intron,intron CG34106 +,beat-IIIa + chr2L_7_17155001 chr2L_17155001 RAL-439 360 chr2L 17167554 17167589 chr2L 17167815 17167850 pogo 9 254 3.0 3.0 3.0 2.2 296 chr2L 17167554 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167850 intron,intron CG34106 +,beat-IIIa + chr2L_9_17165001 chr2L_17165001 RAL-439 361 chr2L 17168175 17168224 chr2L 17168971 17169012 17 792 3.5 6.5 5.0 2.8 837 chr2L 17168175 intron,intron CG34106 +,beat-IIIa + chr2L 17168594 intron,intron CG34106 +,beat-IIIa + chr2L 17169012 intron,intron CG34106 +,beat-IIIa + chr2L_17_17165001 chr2L_17165001 RAL-439 362 chr2L 17199153 17199159 chr2L 17200635 17200646 hobo 6 1484 8.0 5.0 6.5 0.8 1493 chr2L 17199153 intron beat-IIIc - chr2L 17199900 intron beat-IIIc - chr2L 17200646 intron beat-IIIc - chr2L_6_17195001 chr2L_17195001 RAL-439 363 chr2L 17199176 17199183 chr2L 17200625 17200642 hobo 5 1474 6.0 4.5 5.2 0.8 1466 chr2L 17199176 intron beat-IIIc - chr2L 17199909 intron beat-IIIc - chr2L 17200642 intron beat-IIIc - chr2L_5_17195001 chr2L_17195001 RAL-439 364 chr2L 17264735 17264776 chr2L 17264835 17264871 8 98 3.0 5.0 4.0 1.6 136 chr2L 17264735 intergenic not near genes chr2L 17264803 intergenic not near genes chr2L 17264871 intergenic not near genes chr2L_8_17260001 chr2L_17260001 RAL-439 365 chr2L 17273215 17273228 chr2L 17277982 17278000 F-element 5 4782 2.5 4.0 3.2 1.2 4785 chr2L 17273215 intergenic not near genes chr2L 17275608 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-439 366 chr2L 17335518 17335536 chr2L 17336712 17336721 1360 8 1191 2.0 1.0 1.5 3.2 1203 chr2L 17335518 intergenic not near genes chr2L 17336120 intergenic not near genes chr2L 17336721 intergenic not near genes chr2L_8_17335001 chr2L_17335001 RAL-439 367 chr2L 17424703 17424726 chr2L 17424834 17424858 4 132 5.5 3.5 4.5 0.7 155 chr2L 17424703 intron Dif - chr2L 17424780 intron Dif - chr2L 17424858 intron Dif - chr2L_4_17420001 chr2L_17420001 RAL-439 368 chr2L 17424729 17424739 chr2L 17424825 17424832 4 113 3.0 2.5 2.8 1.1 103 chr2L 17424729 intron Dif - chr2L 17424780 intron Dif - chr2L 17424832 intron Dif - chr2L_4_17420001 chr2L_17420001 RAL-439 369 chr2L 17425751 17425796 chr2L 17425898 17425943 15 145 6.5 3.5 5.0 2.5 192 chr2L 17425751 intron Dif - chr2L 17425847 intron Dif - chr2L 17425943 intron Dif - chr2L_15_17425001 chr2L_17425001 RAL-439 370 chr2L 17432020 17432033 chr2L 17432145 17432159 1360 5 126 0.0 6.0 3.0 1.2 139 chr2L 17432020 intron Dif - chr2L 17432090 intron Dif - chr2L 17432159 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-439 371 chr2L 17466421 17466428 chr2L 17466524 17466539 5 110 2.5 5.5 4.0 1.0 118 chr2L 17466421 intron BicD - chr2L 17466480 intron BicD - chr2L 17466539 intron BicD - chr2L_5_17465001 chr2L_17465001 RAL-439 372 chr2L 17466432 17466447 chr2L 17466523 17466545 7 105 1.5 5.5 3.5 1.6 113 chr2L 17466432 intron BicD - chr2L 17466488 intron BicD - chr2L 17466545 intron BicD - chr2L_7_17465001 chr2L_17465001 RAL-439 373 chr2L 17503201 17503250 chr2L 17503298 17503347 11 94 4.5 4.0 4.2 2.1 146 chr2L 17503201 intron Dhc36C + chr2L 17503274 intron Dhc36C + chr2L 17503347 intron Dhc36C + chr2L_11_17500001 chr2L_17500001 RAL-439 374 chr2L 17538302 17538308 chr2L 17538617 17538618 6 314 5.0 6.0 5.5 0.9 316 chr2L 17538302 intergenic not near genes chr2L 17538460 intergenic not near genes chr2L 17538618 intergenic not near genes chr2L_6_17535001 chr2L_17535001 RAL-439 375 chr2L 17538309 17538339 chr2L 17538615 17538654 10 313 3.5 5.5 4.5 1.8 345 chr2L 17538309 intergenic not near genes chr2L 17538482 intergenic not near genes chr2L 17538654 intergenic not near genes chr2L_10_17535001 chr2L_17535001 RAL-439 376 chr2L 17543576 17543622 chr2L 17543689 17543700 7 106 4.0 2.5 3.2 1.7 124 chr2L 17543576 intergenic not near genes chr2L 17543638 intergenic not near genes chr2L 17543700 intergenic not near genes chr2L_7_17540001 chr2L_17540001 RAL-439 377 chr2L 17564141 17564177 chr2L 17564244 17564268 9 101 6.0 3.5 4.8 1.6 127 chr2L 17564141 intergenic not near genes chr2L 17564204 intergenic not near genes chr2L 17564268 intergenic not near genes chr2L_9_17560001 chr2L_17560001 RAL-439 378 chr2L 17607469 17607478 chr2L 17607567 17607591 4 109 12.0 2.0 7.0 0.5 122 chr2L 17607469 intergenic CR44412 - chr2L 17607530 intergenic CR44412 - chr2L 17607591 intergenic CR44412 - chr2L_4_17605001 chr2L_17605001 RAL-439 379 chr2L 17675925 17675933 chr2L 17676024 17676026 4 98 9.0 4.0 6.5 0.5 101 chr2L 17675925 intron CadN - chr2L 17675976 intron CadN - chr2L 17676026 intron CadN - chr2L_4_17675001 chr2L_17675001 RAL-439 380 chr2L 17675942 17675970 chr2L 17676020 17676069 12 94 4.5 3.5 4.0 2.4 127 chr2L 17675942 intron CadN - chr2L 17676006 intron CadN - chr2L 17676069 intron CadN - chr2L_12_17675001 chr2L_17675001 RAL-439 381 chr2L 17692941 17692972 chr2L 17693075 17693106 9 131 3.5 2.5 3.0 2.2 165 chr2L 17692941 intron CadN - chr2L 17693024 intron CadN - chr2L 17693106 intron CadN - chr2L_9_17690001 chr2L_17690001 RAL-439 382 chr2L 17703652 17703680 chr2L 17703744 17703787 5 94 2.5 5.5 4.0 1.0 135 chr2L 17703652 intron CadN - chr2L 17703720 intron CadN - chr2L 17703787 intron CadN - chr2L_5_17700001 chr2L_17700001 RAL-439 383 chr2L 17723774 17723801 chr2L 17723887 17723907 7 107 2.0 5.5 3.8 1.5 133 chr2L 17723774 intron CadN - chr2L 17723840 intron CadN - chr2L 17723907 intron CadN - chr2L_7_17720001 chr2L_17720001 RAL-439 384 chr2L 17727753 17727772 chr2L 17729446 17729466 hobo 5 1700 4.0 2.0 3.0 1.2 1713 chr2L 17727753 intron CadN - chr2L 17728610 intron CadN - chr2L 17729466 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-439 385 chr2L 17796008 17796045 chr2L 17796108 17796145 10 95 2.0 4.0 3.0 2.5 137 chr2L 17796008 intron CadN2 - chr2L 17796076 intron CadN2 - chr2L 17796145 intron CadN2 - chr2L_10_17795001 chr2L_17795001 RAL-439 386 chr2L 17944417 17944452 chr2L 17944593 17944635 7 180 3.0 2.5 2.8 1.8 218 chr2L 17944417 intergenic not near genes chr2L 17944526 intergenic not near genes chr2L 17944635 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-439 387 chr2L 17951927 17951974 chr2L 17953412 17953461 hobo 15 1482 2.0 4.5 3.2 3.6 1534 chr2L 17951927 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953461 intergenic not near genes chr2L_15_17950001 chr2L_17950001 RAL-439 388 chr2L 18051878 18051905 chr2L 18061023 18061040 roo 6 9153 3.5 6.0 4.8 1.0 9162 chr2L 18051878 intron rdo + chr2L 18056459 intron rdo + chr2L 18061040 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-439 389 chr2L 18095569 18095589 chr2L 18095670 18095690 4 101 9.5 4.0 6.8 0.5 121 chr2L 18095569 intergenic not near genes chr2L 18095630 intergenic not near genes chr2L 18095690 intergenic not near genes chr2L_4_18095001 chr2L_18095001 RAL-439 390 chr2L 18111226 18111251 chr2L 18111337 18111351 7 105 7.5 4.5 6.0 1.0 125 chr2L 18111226 intergenic not near genes chr2L 18111288 intergenic not near genes chr2L 18111351 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-439 391 chr2L 18159718 18159742 chr2L 18162235 18162274 5 2521 23.5 20.5 22.0 0.2 2556 chr2L 18159718 intergenic CG42750 -,CG7200 - chr2L 18160996 3` UTR CG42750 - chr2L 18162274 intron CG42750 - chr2L_5_18160001 chr2L_18160001 RAL-439 392 chr2L 18199036 18199066 chr2L 18199137 18199167 9 100 2.0 9.0 5.5 1.4 131 chr2L 18199036 intron CG42750 - chr2L 18199102 intron CG42750 - chr2L 18199167 intron CG42750 - chr2L_9_18195001 chr2L_18195001 RAL-439 393 chr2L 18254790 18254839 chr2L 18254910 18254959 7 119 6.0 3.5 4.8 1.2 169 chr2L 18254790 intron CG42750 - chr2L 18254874 intron CG42750 - chr2L 18254959 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-439 394 chr2L 18264119 18264172 chr2L 18264226 18264270 18 102 4.0 0.0 2.0 6.0 151 chr2L 18264119 intron CG42750 - chr2L 18264194 intron CG42750 - chr2L 18264270 intron CG42750 - chr2L_18_18260001 chr2L_18260001 RAL-439 395 chr2L 18291530 18291554 chr2L 18291632 18291632 5 99 7.0 0.0 3.5 1.1 102 chr2L 18291530 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291581 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291632 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_5_18290001 chr2L_18290001 RAL-439 396 chr2L 18408023 18408053 chr2L 18412806 18412852 Doc 11 4795 2.5 4.0 3.2 2.6 4829 chr2L 18408023 intergenic not near genes chr2L 18410438 intergenic not near genes chr2L 18412852 intergenic not near genes chr2L_11_18410001 chr2L_18410001 RAL-439 397 chr2L 18417992 18417996 chr2L 18418068 18418094 6 85 0.5 11.0 5.8 0.9 102 chr2L 18417992 intergenic not near genes chr2L 18418043 intergenic not near genes chr2L 18418094 intergenic not near genes chr2L_6_18415001 chr2L_18415001 RAL-439 398 chr2L 18717073 18717090 chr2L 18717182 18717226 4 122 3.5 4.5 4.0 0.8 153 chr2L 18717073 intron CG10348 - chr2L 18717150 intron CG10348 - chr2L 18717226 intron CG10348 - chr2L_4_18715001 chr2L_18715001 RAL-439 399 chr2L 18811406 18811437 chr2L 18811500 18811539 10 100 7.0 1.0 4.0 2.0 133 chr2L 18811406 intergenic CG10570 -,CG42502 - chr2L 18811472 intergenic CG10570 -,CG42502 - chr2L 18811539 intergenic not near genes chr2L_10_18810001 chr2L_18810001 RAL-439 400 chr2L 18812541 18812586 chr2L 18812824 18812836 6 272 1.0 3.5 2.2 1.9 295 chr2L 18812541 intergenic CG17325 +,CG42305 + chr2L 18812688 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812836 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_6_18810001 chr2L_18810001 RAL-439 401 chr2L 18898383 18898428 chr2L 18898485 18898517 14 98 2.0 2.0 2.0 4.7 134 chr2L 18898383 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898517 intergenic not near genes chr2L_14_18895001 chr2L_18895001 RAL-439 402 chr2L 18902614 18902656 chr2L 18902915 18902920 11 292 2.5 7.0 4.8 1.9 306 chr2L 18902614 intergenic not near genes chr2L 18902767 intergenic not near genes chr2L 18902920 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-439 403 chr2L 18926572 18926588 chr2L 18926689 18926705 10 123 3.5 4.5 4.0 2.0 133 chr2L 18926572 intron ssp3 - chr2L 18926638 intron ssp3 - chr2L 18926705 intron ssp3 - chr2L_10_18925001 chr2L_18925001 RAL-439 404 chr2L 19121883 19121899 chr2L 19121999 19122001 6 112 3.0 8.0 5.5 0.9 118 chr2L 19121883 3` UTR l(2)37Cc - chr2L 19121942 3` UTR l(2)37Cc - chr2L 19122001 3` UTR l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-439 405 chr2L 19189958 19190004 chr2L 19190128 19190138 11 162 3.5 3.5 3.5 2.4 180 chr2L 19189958 intergenic pigeon +,drl + chr2L 19190048 intergenic pigeon +,drl + chr2L 19190138 intergenic pigeon +,drl + chr2L_11_19190001 chr2L_19190001 RAL-439 406 chr2L 19246822 19246827 chr2L 19246920 19246925 4 98 8.0 5.5 6.8 0.5 103 chr2L 19246822 intergenic not near genes chr2L 19246874 intergenic not near genes chr2L 19246925 intergenic not near genes chr2L_4_19245001 chr2L_19245001 RAL-439 407 chr2L 19246828 19246839 chr2L 19246919 19246932 6 94 5.0 5.5 5.2 1.0 104 chr2L 19246828 intergenic not near genes chr2L 19246880 intergenic not near genes chr2L 19246932 intergenic not near genes chr2L_6_19245001 chr2L_19245001 RAL-439 408 chr2L 19264451 19264479 chr2L 19264545 19264553 5 92 3.5 0.0 1.8 1.8 102 chr2L 19264451 intergenic not near genes chr2L 19264502 intergenic not near genes chr2L 19264553 intergenic not near genes chr2L_5_19260001 chr2L_19260001 RAL-439 409 chr2L 19357530 19357568 chr2L 19357637 19357675 5 108 2.5 6.5 4.5 0.9 145 chr2L 19357530 intron dnt - chr2L 19357602 intron dnt - chr2L 19357675 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-439 410 chr2L 19377243 19377269 chr2L 19377342 19377368 6 92 0.5 0.0 0.2 5.0 125 chr2L 19377243 intergenic not near genes chr2L 19377306 intergenic not near genes chr2L 19377368 intergenic not near genes chr2L_6_19375001 chr2L_19375001 RAL-439 411 chr2L 19378335 19378356 chr2L 19378427 19378447 4 96 5.0 4.0 4.5 0.7 112 chr2L 19378335 intergenic not near genes chr2L 19378391 intergenic not near genes chr2L 19378447 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-439 412 chr2L 19378359 19378369 chr2L 19378422 19378452 8 84 4.0 3.0 3.5 1.8 93 chr2L 19378359 intergenic not near genes chr2L 19378406 intergenic not near genes chr2L 19378452 intergenic not near genes chr2L_8_19375001 chr2L_19375001 RAL-439 413 chr2L 19405602 19405614 chr2L 19405712 19405724 7 110 5.0 3.5 4.2 1.3 122 chr2L 19405602 intron Pax - chr2L 19405663 intron Pax - chr2L 19405724 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-439 414 chr2L 19405615 19405639 chr2L 19405710 19405733 7 100 2.0 3.5 2.8 1.8 118 chr2L 19405615 intron Pax - chr2L 19405674 intron Pax - chr2L 19405733 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-439 415 chr2L 19437502 19437532 chr2L 19437614 19437644 17 110 3.5 0.0 1.8 6.1 142 chr2L 19437502 intron CG10237 - chr2L 19437573 intron CG10237 - chr2L 19437644 intron CG10237 - chr2L_17_19435001 chr2L_19435001 RAL-439 416 chr2L 19548286 19548310 chr2L 19548373 19548412 8 97 0.0 3.0 1.5 3.2 126 chr2L 19548286 intergenic Tep4 + chr2L 19548349 intergenic Tep4 + chr2L 19548412 intergenic Tep4 + chr2L_8_19545001 chr2L_19545001 RAL-439 417 chr2L 19597265 19597304 chr2L 19597513 19597557 7 240 1.5 3.0 2.2 2.2 292 chr2L 19597265 intron Lar + chr2L 19597411 intron Lar + chr2L 19597557 intron Lar + chr2L_7_19595001 chr2L_19595001 RAL-439 418 chr2L 19608587 19608609 chr2L 19608698 19608720 7 109 5.5 3.0 4.2 1.3 133 chr2L 19608587 intron Lar + chr2L 19608654 intron Lar + chr2L 19608720 intron Lar + chr2L_7_19605001 chr2L_19605001 RAL-439 419 chr2L 19638522 19638572 chr2L 19638620 19638634 10 97 4.0 4.0 4.0 2.0 112 chr2L 19638522 intron Lar + chr2L 19638578 intron Lar + chr2L 19638634 intron Lar + chr2L_10_19635001 chr2L_19635001 RAL-439 420 chr2L 19652559 19652602 chr2L 19674015 19674042 opus 10 21454 9.0 10.5 9.8 0.9 21483 chr2L 19652559 intron Lar + chr2L 19663300 intron Lar + chr2L 19674042 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-439 421 chr2L 19703519 19703565 chr2L 19712675 19712716 roo 5 9155 9.0 5.0 7.0 0.6 9197 chr2L 19703519 intron Lar + chr2L 19708118 intron Lar + chr2L 19712716 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-439 422 chr2L 19762818 19762840 chr2L 19763053 19763086 pogo 11 255 0.0 7.0 3.5 2.4 268 chr2L 19762818 intron fbp - chr2L 19762952 intron fbp - chr2L 19763086 intron fbp - chr2L_11_19760001 chr2L_19760001 RAL-439 423 chr2L 19893640 19893689 chr2L 19893739 19893777 19 101 3.5 4.5 4.0 3.8 137 chr2L 19893640 intron sick + chr2L 19893708 intron sick + chr2L 19893777 intron sick + chr2L_19_19890001 chr2L_19890001 RAL-439 424 chr2L 19901498 19901518 chr2L 19901601 19901631 4 104 4.0 4.5 4.2 0.8 133 chr2L 19901498 intron sick + chr2L 19901564 intron sick + chr2L 19901631 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-439 425 chr2L 19911295 19911319 chr2L 19911387 19911427 4 99 1.5 1.0 1.2 1.8 132 chr2L 19911295 intron,3` UTR sick +,CR43097 - chr2L 19911361 intron,3` UTR sick +,CR43097 - chr2L 19911427 intron,3` UTR sick +,CR43097 - chr2L_4_19910001 chr2L_19910001 RAL-439 426 chr2L 20005873 20005904 chr2L 20010947 20010995 flea 10 5086 7.0 4.0 5.5 1.5 5122 chr2L 20005873 intron CG43861 - chr2L 20008434 intron CG43861 - chr2L 20010995 intron CG43861 - chr2L_10_20005001 chr2L_20005001 RAL-439 427 chr2L 20011751 20011761 chr2L 20011844 20011854 5 96 0.0 7.0 3.5 1.1 103 chr2L 20011751 intron CG43861 - chr2L 20011802 intron CG43861 - chr2L 20011854 intron CG43861 - chr2L_5_20010001 chr2L_20010001 RAL-439 428 chr2L 20022073 20022122 chr2L 20022206 20022218 6 124 2.5 6.5 4.5 1.1 145 chr2L 20022073 intergenic not near genes chr2L 20022146 intergenic not near genes chr2L 20022218 intergenic not near genes chr2L_6_20020001 chr2L_20020001 RAL-439 429 chr2L 20057046 20057076 chr2L 20057127 20057158 8 82 8.5 7.5 8.0 0.9 112 chr2L 20057046 intergenic not near genes chr2L 20057102 intergenic not near genes chr2L 20057158 intergenic not near genes chr2L_8_20055001 chr2L_20055001 RAL-439 430 chr2L 20122618 20122633 chr2L 20122728 20122732 7 107 9.0 4.0 6.5 0.9 114 chr2L 20122618 intergenic not near genes chr2L 20122675 intergenic not near genes chr2L 20122732 intergenic not near genes chr2L_7_20120001 chr2L_20120001 RAL-439 431 chr2L 20124327 20124355 chr2L 20124405 20124443 6 85 6.5 4.0 5.2 1.0 116 chr2L 20124327 intergenic not near genes chr2L 20124385 intergenic not near genes chr2L 20124443 intergenic not near genes chr2L_6_20120001 chr2L_20120001 RAL-439 432 chr2L 20272102 20272123 chr2L 20282827 20282854 copia 9 10729 9.0 7.5 8.2 1.0 10752 chr2L 20272102 intergenic not near genes chr2L 20277478 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_9_20275001 chr2L_20275001 RAL-439 433 chr2L 20272132 20272142 chr2L 20282823 20282873 copia 5 10718 7.0 7.0 7.0 0.6 10741 chr2L 20272132 intergenic not near genes chr2L 20277502 intergenic not near genes chr2L 20282873 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-439 434 chr2L 20296491 20296522 chr2L 20296588 20296623 15 98 2.0 1.5 1.8 5.4 132 chr2L 20296491 intergenic CR43414 - chr2L 20296557 intergenic CR43414 - chr2L 20296623 intergenic CR43414 - chr2L_15_20295001 chr2L_20295001 RAL-439 435 chr2L 20303165 20303188 chr2L 20310642 20310676 blood 10 7483 0.0 4.5 2.2 3.1 7511 chr2L 20303165 intergenic not near genes chr2L 20306920 intergenic not near genes chr2L 20310676 intergenic not near genes chr2L_10_20305001 chr2L_20305001 RAL-439 436 chr2L 20310881 20310918 chr2L 20310960 20310992 6 78 3.0 6.0 4.5 1.1 111 chr2L 20310881 intergenic spir + chr2L 20310936 intergenic spir + chr2L 20310992 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-439 437 chr2L 20320020 20320065 chr2L 20320144 20320204 11 123 3.5 0.0 1.8 3.9 184 chr2L 20320020 intron spir + chr2L 20320112 intron spir + chr2L 20320204 intron spir + chr2L_11_20320001 chr2L_20320001 RAL-439 438 chr2L 20372204 20372223 chr2L 20372474 20372493 pogo 5 269 8.5 6.5 7.5 0.6 289 chr2L 20372204 intergenic Ugt37a1 - chr2L 20372348 intergenic Ugt37a1 - chr2L 20372493 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-439 439 chr2L 20464413 20464413 chr2L 22003994 22003994 4 1539581 9.5 9.0 9.2 0.4 1539581 chr2L 20464413 intergenic CR44980 - chr2L 21234204 intron CG31626 - chr2L 22003994 intergenic not near genes chr2L_4_21230001 chr2L_21230001 RAL-439 440 chr2L 20494766 20494800 chr2L 20494947 20494960 12 179 5.0 2.5 3.8 2.5 194 chr2L 20494766 intergenic CG34007 + chr2L 20494863 intergenic CG34007 + chr2L 20494960 intergenic CG34007 + chr2L_12_20490001 chr2L_20490001 RAL-439 441 chr2L 20498678 20498704 chr2L 20498789 20498823 9 114 3.0 4.5 3.8 1.9 145 chr2L 20498678 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498823 intergenic not near genes chr2L_9_20495001 chr2L_20495001 RAL-439 442 chr2L 20568666 20568687 chr2L 20569066 20569081 X-element 5 401 6.0 4.5 5.2 0.8 415 chr2L 20568666 intron CR45347 + chr2L 20568874 intron CR45347 + chr2L 20569081 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-439 443 chr2L 20576223 20576247 chr2L 20583685 20583697 blood 4 7466 5.0 2.0 3.5 0.9 7474 chr2L 20576223 intergenic not near genes chr2L 20579960 intergenic not near genes chr2L 20583697 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-439 444 chr2L 20639484 20639513 chr2L 20639780 20639803 INE-1 7 295 7.0 4.0 5.5 1.1 319 chr2L 20639484 intergenic not near genes chr2L 20639644 intergenic CG31680 + chr2L 20639803 intergenic CG31680 + chr2L_7_20635001 chr2L_20635001 RAL-439 445 chr2L 20639515 20639529 chr2L 20639776 20639794 INE-1 5 266 5.0 4.0 4.5 0.9 279 chr2L 20639515 intergenic not near genes chr2L 20639654 intergenic CG31680 + chr2L 20639794 intergenic CG31680 + chr2L_5_20635001 chr2L_20635001 RAL-439 446 chr2L 20643323 20643336 chr2L 20643475 20643488 4 151 6.0 8.5 7.2 0.5 165 chr2L 20643323 intergenic phr6-4 -,CG17470 - chr2L 20643406 3` UTR phr6-4 - chr2L 20643488 3` UTR phr6-4 - chr2L_4_20640001 chr2L_20640001 RAL-439 447 chr2L 20644197 20644209 chr2L 20644451 20644463 4 253 1.0 2.5 1.8 1.4 266 chr2L 20644197 exon phr6-4 - chr2L 20644330 exon phr6-4 - chr2L 20644463 exon phr6-4 - chr2L_4_20640001 chr2L_20640001 RAL-439 448 chr2L 20674813 20674848 chr2L 20674917 20674946 7 102 5.0 0.0 2.5 2.0 133 chr2L 20674813 intron CG31678 - chr2L 20674880 intron CG31678 - chr2L 20674946 intron CG31678 - chr2L_7_20670001 chr2L_20670001 RAL-439 449 chr2L 20835803 20835834 chr2L 20836525 20836570 Quasimodo 14 731 6.5 2.0 4.2 2.7 767 chr2L 20835803 5` UTR Oseg5 - chr2L 20836186 intergenic Oseg5 -,Spn38F - chr2L 20836570 intergenic Spn38F - chr2L_14_20835001 chr2L_20835001 RAL-439 450 chr2L 20901478 20901483 chr2L 20902617 20902653 1360 4 1159 1.0 3.0 2.0 1.3 1175 chr2L 20901478 intron,intron CG43739 -,sky - chr2L 20902066 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-439 451 chr2L 20976634 20976654 chr2L 20981469 20981479 X-element 8 4834 3.0 4.5 3.8 1.7 4845 chr2L 20976634 intron CG42238 - chr2L 20979056 intron CG42238 - chr2L 20981479 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-439 452 chr2L 20976661 20976676 chr2L 20981463 20981488 X-element 7 4814 1.0 4.0 2.5 2.0 4827 chr2L 20976661 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981488 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-439 453 chr2L 21020287 21020303 chr2L 21023948 21023991 NOF 4 3673 1.0 2.0 1.5 1.6 3704 chr2L 21020287 intron CG42238 - chr2L 21022139 intron CG42238 - chr2L 21023991 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-439 454 chr2L 21031873 21031904 chr2L 21032134 21032183 7 271 5.0 5.0 5.0 1.2 310 chr2L 21031873 intron CG42238 - chr2L 21032028 intron CG42238 - chr2L 21032183 intron CG42238 - chr2L_7_21030001 chr2L_21030001 RAL-439 455 chr2L 21041139 21041165 chr2L 21049396 21049396 Tirant 7 8261 1.0 4.5 2.8 1.8 8257 chr2L 21041139 intron CG42238 - chr2L 21045268 intron CG42238 - chr2L 21049396 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-439 456 chr2L 21109978 21109988 chr2L 21110090 21110094 4 113 8.0 16.0 12.0 0.3 116 chr2L 21109978 intron Nhe2 + chr2L 21110036 intron Nhe2 + chr2L 21110094 intron Nhe2 + chr2L_4_21110001 chr2L_21110001 RAL-439 457 chr2L 21119264 21119278 chr2L 21119368 21119382 6 104 12.5 5.0 8.8 0.6 118 chr2L 21119264 intron Nhe2 + chr2L 21119323 intron Nhe2 + chr2L 21119382 intron Nhe2 + chr2L_6_21115001 chr2L_21115001 RAL-439 458 chr2L 21119296 21119316 chr2L 21119365 21119420 13 98 4.5 5.0 4.8 2.2 124 chr2L 21119296 intron Nhe2 + chr2L 21119358 intron Nhe2 + chr2L 21119420 intron Nhe2 + chr2L_13_21115001 chr2L_21115001 RAL-439 459 chr2L 21160741 21160787 chr2L 21160837 21160843 6 92 7.5 4.0 5.8 0.9 102 chr2L 21160741 3` UTR,3` UTR CG9248 +,Nbr - chr2L 21160792 3` UTR,3` UTR CG9248 +,Nbr - chr2L 21160843 3` UTR,3` UTR CG9248 +,Nbr - chr2L_6_21160001 chr2L_21160001 RAL-439 460 chr2L 21286589 21286623 chr2L 21286682 21286721 15 94 7.0 3.5 5.2 2.4 132 chr2L 21286589 exon Mio - chr2L 21286655 intron Mio - chr2L 21286721 intron Mio - chr2L_15_21285001 chr2L_21285001 RAL-439 461 chr2L 21347543 21347568 chr2L 21355023 21355060 blood 7 7484 11.0 7.0 9.0 0.7 7517 chr2L 21347543 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355060 intron Tsp39D + chr2L_7_21350001 chr2L_21350001 RAL-439 462 chr2L 21691829 21691844 chr2L 21698296 21698329 Burdock 5 6478 9.5 2.0 5.8 0.7 6500 chr2L 21691829 intron CG31619 + chr2L 21695079 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_5_21695001 chr2L_21695001 RAL-439 463 chr2L 21769948 21769986 chr2L 21770033 21770087 17 90 6.5 2.0 4.2 3.3 139 chr2L 21769948 intron CG31612 - chr2L 21770018 intron CG31612 - chr2L 21770087 intron CG31612 - chr2L_17_21770001 chr2L_21770001 RAL-439 464 chr2L 21825209 21825244 chr2L 21825308 21825326 16 102 3.0 5.5 4.2 3.1 117 chr2L 21825209 intergenic not near genes chr2L 21825268 intergenic not near genes chr2L 21825326 intergenic not near genes chr2L_16_21825001 chr2L_21825001 RAL-439 465 chr2L 21981676 21981702 chr2L 21990856 21990876 roo 10 9180 4.5 4.5 4.5 1.8 9200 chr2L 21981676 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-439 466 chr2L 22037353 22037404 chr2L 22037675 22037721 INE-1 21 318 4.5 5.0 4.8 3.6 368 chr2L 22037353 intergenic not near genes chr2L 22037537 intergenic CG41434 + chr2L 22037721 intergenic CG41434 + chr2L_21_22035001 chr2L_22035001 RAL-439 467 chr2L 22107353 22107408 chr2L 22107500 22107523 9 142 11.0 1.0 6.0 1.3 170 chr2L 22107353 intergenic CG10834 - chr2L 22107438 intergenic CG10834 - chr2L 22107523 intergenic CG10834 - chr2L_9_22105001 chr2L_22105001 RAL-439 468 chr2L 22305737 22305786 chr2L 22305835 22305853 23 93 4.5 3.0 3.8 4.8 116 chr2L 22305737 intergenic not near genes chr2L 22305795 intergenic not near genes chr2L 22305853 intergenic not near genes chr2L_23_22305001 chr2L_22305001 RAL-439 469 chr2L 22574140 22574145 chr2L 22574450 22574457 6 318 8.0 5.5 6.8 0.8 317 chr2L 22574140 intergenic not near genes chr2L 22574298 intergenic not near genes chr2L 22574457 intergenic not near genes chr2L_6_22570001 chr2L_22570001 RAL-439 470 chr2L 22581950 22581998 chr2L 22583759 22583797 S-element 15 1802 2.5 4.0 3.2 3.6 1847 chr2L 22581950 intron CG17494 + chr2L 22582874 intron CG17494 + chr2L 22583797 intron CG17494 + chr2L_15_22580001 chr2L_22580001 RAL-439 471 chr2L 22642645 22642679 chr2L 22642735 22642745 14 85 6.5 3.0 4.8 2.4 100 chr2L 22642645 intron CG40006 - chr2L 22642695 intron CG40006 - chr2L 22642745 intron CG40006 - chr2L_14_22640001 chr2L_22640001 RAL-439 472 chr2L 22674050 22674093 chr2L 22674147 22674170 10 88 5.5 2.5 4.0 2.0 120 chr2L 22674050 intron CG40006 - chr2L 22674110 intron CG40006 - chr2L 22674170 intron CG40006 - chr2L_10_22670001 chr2L_22670001 RAL-439 473 chr2L 22679801 22679828 chr2L 22684573 22684590 F-element 7 4778 2.5 6.0 4.2 1.3 4789 chr2L 22679801 intron CG40006 - chr2L 22682196 intron CG40006 - chr2L 22684590 intron CG40006 - chr2L_7_22680001 chr2L_22680001 RAL-439 474 chr2L 22750706 22750733 chr2L 22751043 22751085 12 349 4.0 1.0 2.5 3.4 379 chr2L 22750706 intron CG40006 - chr2L 22750896 intron CG40006 - chr2L 22751085 intron CG40006 - chr2L_12_22750001 chr2L_22750001 RAL-439 475 chr2L 22776401 22776412 chr2L 22778210 22778213 S-element 4 1807 15.0 8.5 11.8 0.3 1812 chr2L 22776401 intergenic not near genes chr2L 22777307 intergenic not near genes chr2L 22778213 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-439 476 chr2L 22776413 22776450 chr2L 22778209 22778259 S-element 18 1802 8.0 8.0 8.0 2.0 1846 chr2L 22776413 intergenic not near genes chr2L 22777336 intergenic not near genes chr2L 22778259 intergenic not near genes chr2L_18_22775001 chr2L_22775001 RAL-439 477 chr2R 529318 529357 chr2R 537948 537956 Max-element 5 8625 0.5 4.5 2.5 1.4 8638 chr2R 529318 intron CG40378 + chr2R 533637 intron CG40378 + chr2R 537956 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-439 478 chr2R 698933 698963 chr2R 699015 699030 4 77 2.0 1.0 1.5 1.6 97 chr2R 698933 intron CG43676 + chr2R 698982 intron CG43676 + chr2R 699030 intron CG43676 + chr2R_4_695001 chr2R_695001 RAL-439 479 chr2R 1082375 1082385 chr2R 1087126 1087131 Doc 4 4772 2.0 3.0 2.5 1.1 4756 chr2R 1082375 intron rl + chr2R 1084753 intron rl + chr2R 1087131 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-439 480 chr2R 1365848 1365893 chr2R 1365975 1366025 16 118 2.0 4.5 3.2 3.8 177 chr2R 1365848 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366025 intron l(2)41Ab + chr2R_16_1365001 chr2R_1365001 RAL-439 481 chr2R 1516585 1516603 chr2R 1521333 1521351 1731 15 4747 20.0 9.0 14.5 1.0 4766 chr2R 1516585 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521351 5` UTR Maf1 - chr2R_15_1515001 chr2R_1515001 RAL-439 482 chr2R 2015119 2015162 chr2R 2015216 2015259 8 95 3.5 3.0 3.2 1.9 140 chr2R 2015119 intron CG17684 - chr2R 2015189 intron CG17684 - chr2R 2015259 intron CG17684 - chr2R_8_2015001 chr2R_2015001 RAL-439 483 chr2R 2498972 2499015 chr2R 2508133 2508176 roo 11 9164 5.5 4.0 4.8 1.9 9204 chr2R 2498972 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508176 intron MFS17 - chr2R_11_2500001 chr2R_2500001 RAL-439 484 chr2R 2508292 2508334 chr2R 2508446 2508487 5 154 3.0 2.5 2.8 1.3 195 chr2R 2508292 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508487 intron MFS17 - chr2R_5_2505001 chr2R_2505001 RAL-439 485 chr2R 2529276 2529283 chr2R 2529370 2529382 5 95 9.5 4.5 7.0 0.6 106 chr2R 2529276 intron MFS17 - chr2R 2529329 intron MFS17 - chr2R 2529382 intron MFS17 - chr2R_5_2525001 chr2R_2525001 RAL-439 486 chr2R 2529297 2529322 chr2R 2529369 2529419 11 87 7.5 4.5 6.0 1.6 122 chr2R 2529297 intron MFS17 - chr2R 2529358 intron MFS17 - chr2R 2529419 intron MFS17 - chr2R_11_2525001 chr2R_2525001 RAL-439 487 chr2R 2591520 2591562 chr2R 2594216 2594234 roo 7 2677 20.5 9.0 14.8 0.4 2714 chr2R 2591520 intergenic not near genes chr2R 2592877 intergenic not near genes chr2R 2594234 intergenic not near genes chr2R_7_2590001 chr2R_2590001 RAL-439 488 chr2R 3515262 3515307 chr2R 3515370 3515415 11 105 28.5 23.0 25.8 0.4 153 chr2R 3515262 intergenic not near genes chr2R 3515338 intergenic not near genes chr2R 3515415 intergenic not near genes chr2R_11_3515001 chr2R_3515001 RAL-439 489 chr2R 3532600 3532643 chr2R 3536063 3536106 Doc 7 3455 2.5 5.5 4.0 1.4 3506 chr2R 3532600 intergenic not near genes chr2R 3534353 intergenic not near genes chr2R 3536106 intergenic not near genes chr2R_7_3530001 chr2R_3530001 RAL-439 490 chr2R 4312943 4312949 chr2R 4313047 4313053 4 103 8.5 4.0 6.2 0.6 110 chr2R 4312943 intergenic not near genes chr2R 4312998 intergenic not near genes chr2R 4313053 intergenic not near genes chr2R_4_4310001 chr2R_4310001 RAL-439 491 chr2R 4312956 4312987 chr2R 4313041 4313091 13 96 3.0 3.5 3.2 3.1 135 chr2R 4312956 intergenic not near genes chr2R 4313024 intergenic not near genes chr2R 4313091 intergenic not near genes chr2R_13_4310001 chr2R_4310001 RAL-439 492 chr2R 4621316 4621342 chr2R 4621860 4621861 5 541 3.0 2.0 2.5 1.4 545 chr2R 4621316 3` UTR CR44101 - chr2R 4621588 3` UTR CR44101 - chr2R 4621861 3` UTR CR44101 - chr2R_5_4620001 chr2R_4620001 RAL-439 493 chr2R 4622943 4622984 chr2R 4624110 4624163 1360 9 1167 1.0 3.5 2.2 2.8 1220 chr2R 4622943 intergenic CR44101 - chr2R 4623553 intergenic not near genes chr2R 4624163 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-439 494 chr2R 4624630 4624671 chr2R 4626545 4626596 Bica 8 1907 4.5 3.0 3.8 1.7 1966 chr2R 4624630 intergenic not near genes chr2R 4625613 intergenic not near genes chr2R 4626596 intergenic not near genes chr2R_8_4625001 chr2R_4625001 RAL-439 495 chr2R 4821200 4821244 chr2R 4821305 4821329 17 94 4.0 9.0 6.5 2.3 129 chr2R 4821200 intron CG17528 - chr2R 4821264 intron CG17528 - chr2R 4821329 intron CG17528 - chr2R_17_4820001 chr2R_4820001 RAL-439 496 chr2R 4838862 4838899 chr2R 4840394 4840442 transib2 7 1539 4.0 0.5 2.2 2.2 1580 chr2R 4838862 intergenic not near genes chr2R 4839652 intergenic not near genes chr2R 4840442 intergenic not near genes chr2R_7_4835001 chr2R_4835001 RAL-439 497 chr2R 4908909 4908928 chr2R 4909006 4909023 4 90 3.5 4.5 4.0 0.8 114 chr2R 4908909 intergenic not near genes chr2R 4908966 intergenic not near genes chr2R 4909023 intergenic not near genes chr2R_4_4905001 chr2R_4905001 RAL-439 498 chr2R 4955018 4955054 chr2R 4955389 4955395 4 364 10.5 1.5 6.0 0.6 377 chr2R 4955018 intron Ir41a + chr2R 4955206 intron Ir41a + chr2R 4955395 intron Ir41a + chr2R_4_4955001 chr2R_4955001 RAL-439 499 chr2R 4957000 4957044 chr2R 4957122 4957137 14 111 9.5 3.5 6.5 1.9 137 chr2R 4957000 intron Ir41a + chr2R 4957068 intron Ir41a + chr2R 4957137 intron Ir41a + chr2R_14_4955001 chr2R_4955001 RAL-439 500 chr2R 5075929 5075979 chr2R 5076071 5076121 4 142 32.5 35.5 34.0 0.1 192 chr2R 5075929 intergenic not near genes chr2R 5076025 intergenic not near genes chr2R 5076121 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-439 501 chr2R 5125250 5125271 chr2R 5125569 5125592 6 324 2.0 2.0 2.0 2.0 342 chr2R 5125250 intron gus - chr2R 5125421 intron gus - chr2R 5125592 intron gus - chr2R_6_5125001 chr2R_5125001 RAL-439 502 chr2R 5237349 5237370 chr2R 5237451 5237472 4 99 5.0 2.5 3.8 0.8 123 chr2R 5237349 intron Nipped-A - chr2R 5237410 intron Nipped-A - chr2R 5237472 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-439 503 chr2R 5364469 5364493 chr2R 5364545 5364589 6 85 3.0 1.5 2.2 1.9 120 chr2R 5364469 5` UTR CR42646 + chr2R 5364529 5` UTR CR42646 + chr2R 5364589 intron CR42646 + chr2R_6_5360001 chr2R_5360001 RAL-439 504 chr2R 5417984 5418021 chr2R 5420624 5420643 Burdock 13 2638 5.5 5.0 5.2 2.1 2659 chr2R 5417984 intron laccase2 + chr2R 5419314 intron laccase2 + chr2R 5420643 intron laccase2 + chr2R_13_5415001 chr2R_5415001 RAL-439 505 chr2R 5476336 5476384 chr2R 5476896 5476912 9 556 4.5 2.5 3.5 2.0 576 chr2R 5476336 intron CG30440 - chr2R 5476624 intron CG30440 - chr2R 5476912 intron CG30440 - chr2R_9_5475001 chr2R_5475001 RAL-439 506 chr2R 5484851 5484889 chr2R 5484949 5484996 5 105 1.5 5.0 3.2 1.2 145 chr2R 5484851 intron CG30440 - chr2R 5484924 intron CG30440 - chr2R 5484996 intron CG30440 - chr2R_5_5480001 chr2R_5480001 RAL-439 507 chr2R 5519346 5519385 chr2R 5519509 5519561 13 168 5.0 3.5 4.2 2.5 215 chr2R 5519346 intron CG30438 + chr2R 5519454 intron CG30438 + chr2R 5519561 intron CG30438 + chr2R_13_5515001 chr2R_5515001 RAL-439 508 chr2R 5543203 5543208 chr2R 5547297 5547302 invader1 4 4099 0.5 10.5 5.5 0.6 4099 chr2R 5543203 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547302 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-439 509 chr2R 5581409 5581425 chr2R 5627599 5627634 6 46209 1.5 7.0 4.2 1.2 46225 chr2R 5581409 intergenic not near genes chr2R 5604522 intron Fis1 - chr2R 5627634 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-439 510 chr2R 5639998 5640043 chr2R 5640094 5640140 5 86 1.5 5.0 3.2 1.2 142 chr2R 5639998 intergenic not near genes chr2R 5640069 intergenic not near genes chr2R 5640140 intergenic not near genes chr2R_5_5640001 chr2R_5640001 RAL-439 511 chr2R 5640469 5640494 chr2R 5640556 5640566 12 102 3.5 3.5 3.5 2.7 97 chr2R 5640469 intergenic CG11665 - chr2R 5640518 intergenic CG11665 - chr2R 5640566 intergenic CG11665 - chr2R_12_5640001 chr2R_5640001 RAL-439 512 chr2R 5655397 5655432 chr2R 5655497 5655516 6 97 11.0 7.0 9.0 0.6 119 chr2R 5655397 exon CG1344 + chr2R 5655456 exon CG1344 + chr2R 5655516 exon CG1344 + chr2R_6_5655001 chr2R_5655001 RAL-439 513 chr2R 5655857 5655908 chr2R 5655965 5656016 15 101 5.0 2.5 3.8 3.1 159 chr2R 5655857 3` UTR CG1344 + chr2R 5655936 3` UTR CG1344 + chr2R 5656016 3` UTR CG1344 + chr2R_15_5655001 chr2R_5655001 RAL-439 514 chr2R 5710631 5710683 chr2R 5710728 5710780 7 81 3.0 4.5 3.8 1.5 149 chr2R 5710631 intron ap - chr2R 5710706 intron ap - chr2R 5710780 intron ap - chr2R_7_5710001 chr2R_5710001 RAL-439 515 chr2R 5750439 5750452 chr2R 5750545 5750558 7 105 7.5 7.5 7.5 0.8 119 chr2R 5750439 intergenic not near genes chr2R 5750498 intergenic not near genes chr2R 5750558 intergenic not near genes chr2R_7_5750001 chr2R_5750001 RAL-439 516 chr2R 5790455 5790494 chr2R 5790550 5790599 19 102 6.5 8.0 7.2 2.3 144 chr2R 5790455 intergenic not near genes chr2R 5790527 intergenic not near genes chr2R 5790599 intergenic not near genes chr2R_19_5790001 chr2R_5790001 RAL-439 517 chr2R 5869269 5869307 chr2R 5874350 5874393 flea 13 5083 4.0 4.5 4.2 2.5 5124 chr2R 5869269 intergenic not near genes chr2R 5871831 intergenic not near genes chr2R 5874393 intergenic not near genes chr2R_13_5870001 chr2R_5870001 RAL-439 518 chr2R 5902148 5902165 chr2R 5909727 5909743 17.6 5 7576 8.5 8.5 8.5 0.5 7595 chr2R 5902148 intron CG43366 + chr2R 5905946 intron CG43366 + chr2R 5909743 intron CG43366 + chr2R_5_5905001 chr2R_5905001 RAL-439 519 chr2R 5947048 5947082 chr2R 5947189 5947223 13 141 5.0 4.5 4.8 2.2 175 chr2R 5947048 intergenic not near genes chr2R 5947136 intergenic not near genes chr2R 5947223 intergenic not near genes chr2R_13_5945001 chr2R_5945001 RAL-439 520 chr2R 6088366 6088388 chr2R 6088473 6088501 8 108 4.5 9.5 7.0 1.0 135 chr2R 6088366 intergenic not near genes chr2R 6088434 intergenic not near genes chr2R 6088501 intergenic not near genes chr2R_8_6085001 chr2R_6085001 RAL-439 521 chr2R 6090848 6090891 chr2R 6090970 6091008 14 119 6.5 4.0 5.2 2.3 160 chr2R 6090848 3` UTR EcR - chr2R 6090928 3` UTR EcR - chr2R 6091008 3` UTR EcR - chr2R_14_6090001 chr2R_6090001 RAL-439 522 chr2R 6129314 6129356 chr2R 6129407 6129454 10 90 2.5 4.0 3.2 2.4 140 chr2R 6129314 intron EcR - chr2R 6129384 intron EcR - chr2R 6129454 intron EcR - chr2R_10_6125001 chr2R_6125001 RAL-439 523 chr2R 6168177 6168222 chr2R 6168279 6168324 11 99 1.5 3.0 2.2 3.4 147 chr2R 6168177 intron EcR - chr2R 6168250 intron EcR - chr2R 6168324 intron EcR - chr2R_11_6165001 chr2R_6165001 RAL-439 524 chr2R 6178100 6178144 chr2R 6178246 6178290 17 145 4.5 4.5 4.5 3.1 190 chr2R 6178100 intergenic not near genes chr2R 6178195 intergenic not near genes chr2R 6178290 intergenic not near genes chr2R_17_6175001 chr2R_6175001 RAL-439 525 chr2R 6194666 6194704 chr2R 6194769 6194771 7 94 4.5 1.5 3.0 1.8 105 chr2R 6194666 intron Ptr - chr2R 6194718 intron Ptr - chr2R 6194771 intron Ptr - chr2R_7_6190001 chr2R_6190001 RAL-439 526 chr2R 6494515 6494553 chr2R 6499292 6499325 F-element 7 4775 2.5 4.5 3.5 1.6 4810 chr2R 6494515 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499325 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-439 527 chr2R 6530544 6530569 chr2R 6530676 6530716 9 143 3.5 9.0 6.2 1.2 172 chr2R 6530544 intron jing + chr2R 6530630 intron jing + chr2R 6530716 intron jing + chr2R_9_6530001 chr2R_6530001 RAL-439 528 chr2R 6538365 6538410 chr2R 6538463 6538478 10 92 2.0 1.5 1.8 3.6 113 chr2R 6538365 intron jing + chr2R 6538422 intron jing + chr2R 6538478 intron jing + chr2R_10_6535001 chr2R_6535001 RAL-439 529 chr2R 6539803 6539851 chr2R 6539946 6539984 11 131 1.5 2.5 2.0 3.7 181 chr2R 6539803 intron jing + chr2R 6539894 intron jing + chr2R 6539984 intron jing + chr2R_11_6535001 chr2R_6535001 RAL-439 530 chr2R 6539852 6539856 chr2R 6539944 6539963 5 115 1.5 2.5 2.0 1.7 111 chr2R 6539852 intron jing + chr2R 6539908 intron jing + chr2R 6539963 intron jing + chr2R_5_6535001 chr2R_6535001 RAL-439 531 chr2R 6579787 6579799 chr2R 6584894 6584906 flea 4 5107 4.0 9.0 6.5 0.5 5119 chr2R 6579787 intron jing + chr2R 6582346 intron jing + chr2R 6584906 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-439 532 chr2R 6664165 6664197 chr2R 6665986 6666018 S-element 6 1820 5.0 2.0 3.5 1.3 1853 chr2R 6664165 intron,3` UTR Adf1 +,CR45128 - chr2R 6665092 intron Adf1 + chr2R 6666018 intron Adf1 + chr2R_6_6665001 chr2R_6665001 RAL-439 533 chr2R 6841246 6841285 chr2R 6841368 6841402 26 120 9.0 1.5 5.2 4.2 156 chr2R 6841246 intergenic CR44166 + chr2R 6841324 intergenic CR44166 + chr2R 6841402 intergenic CR44166 + chr2R_26_6840001 chr2R_6840001 RAL-439 534 chr2R 6952151 6952185 chr2R 6959751 6959785 opus 11 7600 3.5 7.5 5.5 1.7 7634 chr2R 6952151 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959785 intron,intron mim -,CheB42c - chr2R_11_6955001 chr2R_6955001 RAL-439 535 chr2R 6964265 6964316 chr2R 6964362 6964403 18 90 3.0 7.0 5.0 3.0 138 chr2R 6964265 intron,intron mim -,CheB42c - chr2R 6964334 intron,intron mim -,CheB42c - chr2R 6964403 intron,intron mim -,CheB42c - chr2R_18_6960001 chr2R_6960001 RAL-439 536 chr2R 6978801 6978818 chr2R 6978951 6978980 5 157 4.0 2.5 3.2 1.2 179 chr2R 6978801 intron vimar - chr2R 6978890 intron vimar - chr2R 6978980 intron vimar - chr2R_5_6975001 chr2R_6975001 RAL-439 537 chr2R 6978820 6978835 chr2R 6978947 6978987 6 152 3.0 2.5 2.8 1.6 167 chr2R 6978820 intron vimar - chr2R 6978904 intron vimar - chr2R 6978987 intron vimar - chr2R_6_6975001 chr2R_6975001 RAL-439 538 chr2R 7008523 7008543 chr2R 7008613 7008655 5 107 3.0 8.5 5.8 0.7 132 chr2R 7008523 3` UTR Tsp42Ec + chr2R 7008589 3` UTR Tsp42Ec + chr2R 7008655 intergenic Tsp42Ec + chr2R_5_7005001 chr2R_7005001 RAL-439 539 chr2R 7102638 7102670 chr2R 7102758 7102780 5 116 3.0 10.0 6.5 0.7 142 chr2R 7102638 intron esn + chr2R 7102709 intron esn + chr2R 7102780 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-439 540 chr2R 7196555 7196569 chr2R 7201350 7201364 F-element 6 4794 7.0 1.5 4.2 1.2 4809 chr2R 7196555 intron pk + chr2R 7198960 intron pk + chr2R 7201364 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-439 541 chr2R 7196571 7196596 chr2R 7201348 7201366 F-element 14 4786 3.5 1.5 2.5 4.0 4795 chr2R 7196571 intron pk + chr2R 7198968 intron pk + chr2R 7201366 intron pk + chr2R_14_7195001 chr2R_7195001 RAL-439 542 chr2R 7209864 7209872 chr2R 7217635 7217653 roo 4 7778 6.0 3.5 4.8 0.7 7789 chr2R 7209864 intron pk + chr2R 7213758 intron pk + chr2R 7217653 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-439 543 chr2R 7294514 7294538 chr2R 7294615 7294632 7 101 8.0 6.0 7.0 0.9 118 chr2R 7294514 intron pwn + chr2R 7294573 intron pwn + chr2R 7294632 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-439 544 chr2R 7417883 7418162 chr2R 7417989 7418231 17 95 8.5 6.0 7.2 2.1 348 chr2R 7417883 intergenic not near genes chr2R 7418057 intergenic not near genes chr2R 7418231 intergenic not near genes chr2R_17_7415001 chr2R_7415001 RAL-439 545 chr2R 7418905 7418919 chr2R 7419026 7419040 9 120 10.0 7.5 8.8 0.9 135 chr2R 7418905 intergenic so + chr2R 7418972 intergenic so + chr2R 7419040 intergenic so + chr2R_9_7415001 chr2R_7415001 RAL-439 546 chr2R 7418920 7418927 chr2R 7419022 7419048 5 116 8.0 6.0 7.0 0.6 128 chr2R 7418920 intergenic so + chr2R 7418984 intergenic so + chr2R 7419048 intergenic so + chr2R_5_7415001 chr2R_7415001 RAL-439 547 chr2R 7434882 7434895 chr2R 7439198 7439201 Juan 4 4316 7.0 7.0 7.0 0.5 4319 chr2R 7434882 intergenic so + chr2R 7437042 intergenic not near genes chr2R 7439201 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-439 548 chr2R 7434898 7434917 chr2R 7439194 7439208 Juan 7 4307 13.0 6.5 9.8 0.6 4310 chr2R 7434898 intergenic so + chr2R 7437053 intergenic not near genes chr2R 7439208 intergenic not near genes chr2R_7_7435001 chr2R_7435001 RAL-439 549 chr2R 7459263 7459307 chr2R 7459371 7459385 16 102 5.5 2.5 4.0 3.2 122 chr2R 7459263 intergenic Inos -,CG11141 - chr2R 7459324 intergenic CG11141 -,Inos - chr2R 7459385 intergenic CG11141 - chr2R_16_7455001 chr2R_7455001 RAL-439 550 chr2R 7608389 7608432 chr2R 7613612 7613637 I-element 9 5215 7.0 5.5 6.2 1.2 5248 chr2R 7608389 intron CG1358 - chr2R 7611013 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-439 551 chr2R 7743463 7743496 chr2R 7743564 7743577 5 92 5.5 1.0 3.2 1.2 114 chr2R 7743463 intron,intron CG30497 -,CG45093 - chr2R 7743520 intron,intron CG30497 -,CG45093 - chr2R 7743577 intron,intron CG30497 -,CG45093 - chr2R_5_7740001 chr2R_7740001 RAL-439 552 chr2R 7743497 7743510 chr2R 7743562 7743590 6 82 3.0 1.0 2.0 2.0 93 chr2R 7743497 intron,intron CG30497 -,CG45093 - chr2R 7743544 intron,intron CG30497 -,CG45093 - chr2R 7743590 intron,intron CG30497 -,CG45093 - chr2R_6_7740001 chr2R_7740001 RAL-439 553 chr2R 7815651 7815655 chr2R 7822140 7822144 Burdock 4 6489 10.0 4.5 7.2 0.5 6493 chr2R 7815651 intergenic CG1882 + chr2R 7818898 intergenic not near genes chr2R 7822144 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-439 554 chr2R 7815657 7815700 chr2R 7822139 7822164 Burdock 12 6482 5.0 4.5 4.8 2.1 6507 chr2R 7815657 intergenic CG1882 + chr2R 7818910 intergenic not near genes chr2R 7822164 3` UTR cathD - chr2R_12_7815001 chr2R_7815001 RAL-439 555 chr2R 7869196 7869221 chr2R 7873976 7874007 Doc 6 4786 2.5 3.5 3.0 1.5 4811 chr2R 7869196 intron Dgk - chr2R 7871602 intron Dgk - chr2R 7874007 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-439 556 chr2R 7952141 7952158 chr2R 7952415 7952422 8 283 1.5 4.5 3.0 2.0 281 chr2R 7952141 intron CG14764 - chr2R 7952282 intron CG14764 - chr2R 7952422 intron CG14764 - chr2R_8_7950001 chr2R_7950001 RAL-439 557 chr2R 7982044 7982091 chr2R 7982174 7982177 14 117 5.5 4.0 4.8 2.4 133 chr2R 7982044 intron ACC - chr2R 7982110 intron ACC - chr2R 7982177 intron ACC - chr2R_14_7980001 chr2R_7980001 RAL-439 558 chr2R 8026792 8026837 chr2R 8026888 8026933 18 90 5.5 5.0 5.2 2.9 141 chr2R 8026792 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026933 intergenic CR45267 + chr2R_18_8025001 chr2R_8025001 RAL-439 559 chr2R 8049587 8049602 chr2R 8049732 8049734 8 148 1.5 10.0 5.8 1.2 147 chr2R 8049587 intergenic not near genes chr2R 8049660 intergenic not near genes chr2R 8049734 intergenic not near genes chr2R_8_8045001 chr2R_8045001 RAL-439 560 chr2R 8067048 8067094 chr2R 8067151 8067198 12 95 5.5 5.5 5.5 1.8 150 chr2R 8067048 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067198 exon CG17977 - chr2R_12_8065001 chr2R_8065001 RAL-439 561 chr2R 8076664 8076678 chr2R 8076764 8076778 8 100 6.5 4.0 5.2 1.3 114 chr2R 8076664 intron lig + chr2R 8076721 intron lig + chr2R 8076778 intron lig + chr2R_8_8075001 chr2R_8075001 RAL-439 562 chr2R 8076681 8076698 chr2R 8076761 8076798 8 96 5.0 4.0 4.5 1.5 117 chr2R 8076681 intron lig + chr2R 8076740 intron lig + chr2R 8076798 intron lig + chr2R_8_8075001 chr2R_8075001 RAL-439 563 chr2R 8076700 8076708 chr2R 8076759 8076808 5 90 4.0 4.0 4.0 1.0 108 chr2R 8076700 intron lig + chr2R 8076754 intron lig + chr2R 8076808 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-439 564 chr2R 8089241 8089260 chr2R 8089342 8089366 6 103 10.5 5.5 8.0 0.7 125 chr2R 8089241 3` UTR sut2 + chr2R 8089304 intergenic sut2 +,sut3 + chr2R 8089366 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-439 565 chr2R 8089263 8089284 chr2R 8089339 8089390 9 98 8.0 3.0 5.5 1.4 127 chr2R 8089263 3` UTR sut2 + chr2R 8089326 intergenic sut2 +,sut3 + chr2R 8089390 intergenic sut3 +,sut2 + chr2R_9_8085001 chr2R_8085001 RAL-439 566 chr2R 8203743 8203764 chr2R 8203855 8203876 4 108 4.0 1.5 2.8 1.1 133 chr2R 8203743 intron LRP1 + chr2R 8203810 intron LRP1 + chr2R 8203876 intron LRP1 + chr2R_4_8200001 chr2R_8200001 RAL-439 567 chr2R 8236016 8236057 chr2R 8236117 8236147 10 97 5.5 5.0 5.2 1.6 131 chr2R 8236016 intergenic not near genes chr2R 8236082 intergenic not near genes chr2R 8236147 intergenic not near genes chr2R_10_8235001 chr2R_8235001 RAL-439 568 chr2R 8330852 8330870 chr2R 8331353 8331376 roo 5 505 7.0 8.5 7.8 0.6 524 chr2R 8330852 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-439 569 chr2R 8330872 8330888 chr2R 8331348 8331364 roo 8 497 4.5 7.0 5.8 1.2 492 chr2R 8330872 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331364 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-439 570 chr2R 8452885 8452935 chr2R 8452981 8453024 24 95 1.5 7.0 4.2 4.6 139 chr2R 8452885 intergenic not near genes chr2R 8452954 intergenic not near genes chr2R 8453024 intergenic not near genes chr2R_24_8450001 chr2R_8450001 RAL-439 571 chr2R 8483947 8483988 chr2R 8484038 8484071 10 90 3.5 1.0 2.2 3.1 124 chr2R 8483947 intron mtt - chr2R 8484009 intron mtt - chr2R 8484071 intron mtt - chr2R_10_8480001 chr2R_8480001 RAL-439 572 chr2R 8566024 8566054 chr2R 8566986 8567026 1360 5 970 8.5 11.0 9.8 0.5 1002 chr2R 8566024 5` UTR Cyp6a14 - chr2R 8566525 5` UTR Cyp6a14 - chr2R 8567026 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-439 573 chr2R 8587996 8588045 chr2R 8588100 8588134 11 100 4.5 6.5 5.5 1.7 138 chr2R 8587996 intergenic not near genes chr2R 8588065 intergenic not near genes chr2R 8588134 intergenic not near genes chr2R_11_8585001 chr2R_8585001 RAL-439 574 chr2R 8627735 8627743 chr2R 8627834 8627842 5 98 10.5 3.0 6.8 0.6 107 chr2R 8627735 intergenic beta3GalTII -,CG14749 + chr2R 8627788 intergenic CG14749 +,beta3GalTII - chr2R 8627842 intergenic CG14749 +,beta3GalTII - chr2R_5_8625001 chr2R_8625001 RAL-439 575 chr2R 8633048 8633076 chr2R 8633130 8633138 10 88 6.0 1.5 3.8 2.1 90 chr2R 8633048 intergenic not near genes chr2R 8633093 intergenic not near genes chr2R 8633138 intergenic not near genes chr2R_10_8630001 chr2R_8630001 RAL-439 576 chr2R 8636917 8636926 chr2R 8636989 8637033 5 92 1.0 5.5 3.2 1.2 116 chr2R 8636917 intergenic not near genes chr2R 8636975 intergenic not near genes chr2R 8637033 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-439 577 chr2R 8722763 8722778 chr2R 8723004 8723009 pogo 4 243 3.0 1.0 2.0 1.3 246 chr2R 8722763 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723009 intron CG14767 - chr2R_4_8720001 chr2R_8720001 RAL-439 578 chr2R 8777904 8777943 chr2R 8784128 8784129 diver 5 6211 2.5 4.5 3.5 1.1 6225 chr2R 8777904 intergenic not near genes chr2R 8781016 intergenic not near genes chr2R 8784129 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-439 579 chr2R 8967130 8967160 chr2R 8967218 8967265 8 104 2.5 8.0 5.2 1.3 135 chr2R 8967130 intron CG8216 - chr2R 8967198 intron CG8216 - chr2R 8967265 intron CG8216 - chr2R_8_8965001 chr2R_8965001 RAL-439 580 chr2R 8976207 8976224 chr2R 8976290 8976333 7 97 0.5 3.5 2.0 2.3 126 chr2R 8976207 intron CG8213 - chr2R 8976270 intron CG8213 - chr2R 8976333 intron CG8213 - chr2R_7_8975001 chr2R_8975001 RAL-439 581 chr2R 9331289 9331337 chr2R 9331389 9331437 4 100 0.5 3.5 2.0 1.3 148 chr2R 9331289 intron,intron CG13739 -,CG13954 - chr2R 9331363 intron,intron CG13739 -,CG13954 - chr2R 9331437 intron,intron CG13739 -,CG13954 - chr2R_4_9330001 chr2R_9330001 RAL-439 582 chr2R 9391049 9391087 chr2R 9391622 9391661 6 576 5.5 3.0 4.2 1.2 612 chr2R 9391049 exon l(2)03659 + chr2R 9391355 exon l(2)03659 + chr2R 9391661 exon l(2)03659 + chr2R_6_9390001 chr2R_9390001 RAL-439 583 chr2R 9412063 9412080 chr2R 9412194 9412211 4 131 8.0 6.5 7.2 0.5 148 chr2R 9412063 intron wun - chr2R 9412137 intron wun - chr2R 9412211 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-439 584 chr2R 9412086 9412110 chr2R 9412190 9412206 4 109 3.5 5.5 4.5 0.7 120 chr2R 9412086 intron wun - chr2R 9412146 intron wun - chr2R 9412206 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-439 585 chr2R 9442966 9443019 chr2R 9443065 9443108 13 90 6.5 2.0 4.2 2.5 142 chr2R 9442966 intron ced-6 - chr2R 9443037 intron ced-6 - chr2R 9443108 intron ced-6 - chr2R_13_9440001 chr2R_9440001 RAL-439 586 chr2R 9480055 9480103 chr2R 9490606 9490654 roo 15 10545 3.5 5.5 4.5 2.7 10599 chr2R 9480055 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490654 intergenic not near genes chr2R_15_9485001 chr2R_9485001 RAL-439 587 chr2R 9510646 9510693 chr2R 9510782 9510825 9 134 0.5 1.5 1.0 4.5 179 chr2R 9510646 exon brp + chr2R 9510736 intron brp + chr2R 9510825 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-439 588 chr2R 9529027 9529071 chr2R 9529129 9529171 20 99 6.5 7.5 7.0 2.5 144 chr2R 9529027 intron brp + chr2R 9529099 intron brp + chr2R 9529171 intron brp + chr2R_20_9525001 chr2R_9525001 RAL-439 589 chr2R 9541629 9541653 chr2R 9541708 9541750 8 91 0.0 5.5 2.8 2.1 121 chr2R 9541629 intergenic brp +,CG1888 - chr2R 9541690 intergenic brp +,CG1888 - chr2R 9541750 intergenic brp +,CG1888 - chr2R_8_9540001 chr2R_9540001 RAL-439 590 chr2R 9561805 9561850 chr2R 9561912 9561958 4 108 0.0 2.0 1.0 2.0 153 chr2R 9561805 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561958 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-439 591 chr2R 9726592 9726639 chr2R 9734164 9734207 17.6 14 7569 3.5 8.5 6.0 2.0 7615 chr2R 9726592 intron sqa - chr2R 9730400 intron sqa - chr2R 9734207 intron sqa - chr2R_14_9730001 chr2R_9730001 RAL-439 592 chr2R 9869667 9869699 chr2R 9869798 9869830 4 131 3.0 7.5 5.2 0.6 163 chr2R 9869667 intron cbx - chr2R 9869748 intron cbx - chr2R 9869830 intron cbx - chr2R_4_9865001 chr2R_9865001 RAL-439 593 chr2R 9956063 9956098 chr2R 9956137 9956169 15 83 5.5 5.5 5.5 2.3 106 chr2R 9956063 intron Mef2 - chr2R 9956116 intron Mef2 - chr2R 9956169 intron Mef2 - chr2R_15_9955001 chr2R_9955001 RAL-439 594 chr2R 10005540 10005585 chr2R 10005656 10005687 20 115 5.5 4.5 5.0 3.3 147 chr2R 10005540 intron Pka-R2 - chr2R 10005614 intron Pka-R2 - chr2R 10005687 intron Pka-R2 - chr2R_20_10005001 chr2R_10005001 RAL-439 595 chr2R 10005830 10005878 chr2R 10007015 10007028 1360 7 1165 2.5 2.5 2.5 2.0 1198 chr2R 10005830 intron Pka-R2 - chr2R 10006429 intron Pka-R2 - chr2R 10007028 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-439 596 chr2R 10047813 10047838 chr2R 10047901 10047901 8 94 5.5 4.0 4.8 1.4 88 chr2R 10047813 intron oys - chr2R 10047857 intron oys - chr2R 10047901 intron oys - chr2R_8_10045001 chr2R_10045001 RAL-439 597 chr2R 10122722 10122750 chr2R 10122952 10122962 8 223 6.5 1.0 3.8 1.7 240 chr2R 10122722 intergenic Ccs - chr2R 10122842 intergenic Ccs - chr2R 10122962 intergenic Ccs - chr2R_8_10120001 chr2R_10120001 RAL-439 598 chr2R 10132178 10132215 chr2R 10132276 10132315 4 98 0.5 3.0 1.8 1.4 137 chr2R 10132178 intron gem + chr2R 10132246 intron gem + chr2R 10132315 exon gem + chr2R_4_10130001 chr2R_10130001 RAL-439 599 chr2R 10176881 10176913 chr2R 10186068 10186100 roo 6 9185 3.5 6.0 4.8 1.0 9219 chr2R 10176881 intron KCNQ - chr2R 10181490 intron KCNQ - chr2R 10186100 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-439 600 chr2R 10189194 10189229 chr2R 10189292 10189327 7 98 4.0 7.5 5.8 1.0 133 chr2R 10189194 intron KCNQ - chr2R 10189260 intron KCNQ - chr2R 10189327 intron KCNQ - chr2R_7_10185001 chr2R_10185001 RAL-439 601 chr2R 10201003 10201028 chr2R 10201094 10201124 10 91 10.5 0.5 5.5 1.5 121 chr2R 10201003 intergenic not near genes chr2R 10201064 intergenic not near genes chr2R 10201124 intergenic not near genes chr2R_10_10200001 chr2R_10200001 RAL-439 602 chr2R 10263169 10263179 chr2R 10263276 10263286 5 106 13.5 5.0 9.2 0.5 117 chr2R 10263169 3` UTR CR30009 - chr2R 10263228 3` UTR CR30009 - chr2R 10263286 3` UTR CR30009 - chr2R_5_10260001 chr2R_10260001 RAL-439 603 chr2R 10263181 10263211 chr2R 10263275 10263313 15 100 6.5 5.0 5.8 2.2 132 chr2R 10263181 3` UTR CR30009 - chr2R 10263247 3` UTR CR30009 - chr2R 10263313 3` UTR CR30009 - chr2R_15_10260001 chr2R_10260001 RAL-439 604 chr2R 10270566 10270590 chr2R 10270666 10270694 4 105 5.5 11.0 8.2 0.4 128 chr2R 10270566 intron CAP + chr2R 10270630 intron CAP + chr2R 10270694 intron CAP + chr2R_4_10270001 chr2R_10270001 RAL-439 605 chr2R 10318494 10318545 chr2R 10318600 10318645 12 104 1.5 2.5 2.0 4.0 151 chr2R 10318494 intron Ndg + chr2R 10318570 intron Ndg + chr2R 10318645 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-439 606 chr2R 10319699 10319740 chr2R 10319811 10319842 12 108 2.0 4.5 3.2 2.9 143 chr2R 10319699 intron Ndg + chr2R 10319770 intron Ndg + chr2R 10319842 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-439 607 chr2R 10349916 10349943 chr2R 10349988 10350001 5 72 2.0 0.5 1.2 2.3 85 chr2R 10349916 intron CG42732 - chr2R 10349958 intron CG42732 - chr2R 10350001 intron CG42732 - chr2R_5_10345001 chr2R_10345001 RAL-439 608 chr2R 10352658 10352704 chr2R 10352750 10352762 10 80 2.5 5.5 4.0 2.0 104 chr2R 10352658 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352710 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352762 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_10_10350001 chr2R_10350001 RAL-439 609 chr2R 10409040 10409082 chr2R 10409137 10409178 9 95 2.0 1.0 1.5 3.6 138 chr2R 10409040 intron CG42732 - chr2R 10409109 intron CG42732 - chr2R 10409178 intron,exon CG42732 -,CG33477 - chr2R_9_10405001 chr2R_10405001 RAL-439 610 chr2R 10561169 10561172 chr2R 10561276 10561305 4 124 0.0 2.0 1.0 2.0 136 chr2R 10561169 intron psq + chr2R 10561237 intron psq + chr2R 10561305 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-439 611 chr2R 10574606 10574639 chr2R 10574708 10574735 4 100 5.0 7.0 6.0 0.6 129 chr2R 10574606 intron psq + chr2R 10574670 intron psq + chr2R 10574735 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-439 612 chr2R 10582098 10582135 chr2R 10582210 10582250 12 112 4.0 0.5 2.2 3.8 152 chr2R 10582098 intron psq + chr2R 10582174 intron psq + chr2R 10582250 intron psq + chr2R_12_10580001 chr2R_10580001 RAL-439 613 chr2R 10622341 10622372 chr2R 10637126 10637127 mdg1 8 14780 11.0 7.0 9.0 0.8 14786 chr2R 10622341 intron CG11883 + chr2R 10629734 intron CG11883 + chr2R 10637127 intron CG11883 + chr2R_8_10625001 chr2R_10625001 RAL-439 614 chr2R 10644038 10644091 chr2R 10644136 10644183 18 93 3.0 0.5 1.8 6.4 145 chr2R 10644038 intron Git - chr2R 10644110 intron Git - chr2R 10644183 intron Git - chr2R_18_10640001 chr2R_10640001 RAL-439 615 chr2R 10757673 10757715 chr2R 10757780 10757802 12 101 1.0 1.0 1.0 6.0 129 chr2R 10757673 intron CG33144 - chr2R 10757738 intron CG33144 - chr2R 10757802 intron CG33144 - chr2R_12_10755001 chr2R_10755001 RAL-439 616 chr2R 10758779 10758819 chr2R 10758896 10758938 7 115 2.0 6.5 4.2 1.3 159 chr2R 10758779 intron CG33144 - chr2R 10758858 intron CG33144 - chr2R 10758938 intron CG33144 - chr2R_7_10755001 chr2R_10755001 RAL-439 617 chr2R 10761549 10761588 chr2R 10761717 10761762 10 167 1.0 3.0 2.0 3.3 213 chr2R 10761549 intron,5` UTR CG33144 -,CR43605 + chr2R 10761656 intron,5` UTR CG33144 -,CR43605 + chr2R 10761762 intron CG33144 - chr2R_10_10760001 chr2R_10760001 RAL-439 618 chr2R 10827341 10827362 chr2R 10827419 10827463 8 87 1.5 4.0 2.8 2.1 122 chr2R 10827341 exon CG12325 + chr2R 10827402 3` UTR CG12325 + chr2R 10827463 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_8_10825001 chr2R_10825001 RAL-439 619 chr2R 10959073 10959097 chr2R 10959172 10959172 8 90 4.5 1.0 2.8 2.1 99 chr2R 10959073 intergenic not near genes chr2R 10959122 intergenic not near genes chr2R 10959172 intergenic not near genes chr2R_8_10955001 chr2R_10955001 RAL-439 620 chr2R 11009807 11009840 chr2R 11018996 11019026 roo 4 9179 5.0 3.5 4.2 0.8 9219 chr2R 11009807 intron luna - chr2R 11014416 intron luna - chr2R 11019026 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-439 621 chr2R 11117986 11117999 chr2R 11118470 11118483 4 484 4.0 1.0 2.5 1.1 497 chr2R 11117986 3` UTR Cyp12d1-p - chr2R 11118234 3` UTR Cyp12d1-p - chr2R 11118483 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-439 622 chr2R 11161648 11161653 chr2R 11161808 11161808 4 159 7.5 6.0 6.8 0.5 160 chr2R 11161648 intron,intron CG13229 -,shn + chr2R 11161728 intron,intron CG13229 -,shn + chr2R 11161808 intron,intron CG13229 -,shn + chr2R_4_11160001 chr2R_11160001 RAL-439 623 chr2R 11176134 11176142 chr2R 11176382 11176390 5 247 3.0 10.5 6.8 0.6 256 chr2R 11176134 intron shn + chr2R 11176262 intron shn + chr2R 11176390 intron shn + chr2R_5_11175001 chr2R_11175001 RAL-439 624 chr2R 11179251 11179264 chr2R 11179357 11179370 4 106 15.5 2.0 8.8 0.4 119 chr2R 11179251 intron shn + chr2R 11179310 intron shn + chr2R 11179370 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-439 625 chr2R 11179266 11179296 chr2R 11179356 11179367 8 84 5.0 2.0 3.5 1.8 101 chr2R 11179266 intron shn + chr2R 11179316 intron shn + chr2R 11179367 intron shn + chr2R_8_11175001 chr2R_11175001 RAL-439 626 chr2R 11194753 11194785 chr2R 11194871 11194913 6 126 6.5 3.0 4.8 1.0 160 chr2R 11194753 intron shn + chr2R 11194833 intron shn + chr2R 11194913 intron shn + chr2R_6_11190001 chr2R_11190001 RAL-439 627 chr2R 11207823 11207846 chr2R 11208012 11208031 BS 7 198 6.5 10.5 8.5 0.7 208 chr2R 11207823 intron shn + chr2R 11207927 intron shn + chr2R 11208031 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-439 628 chr2R 11260497 11260544 chr2R 11260623 11260668 8 118 3.0 0.0 1.5 3.2 171 chr2R 11260497 intergenic not near genes chr2R 11260582 intergenic Cpr47Ed - chr2R 11260668 intergenic Cpr47Ed - chr2R_8_11260001 chr2R_11260001 RAL-439 629 chr2R 11297619 11297638 chr2R 11301963 11301971 flea 6 4342 7.0 0.0 3.5 1.3 4352 chr2R 11297619 intergenic CG42336 - chr2R 11299795 intergenic not near genes chr2R 11301971 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-439 630 chr2R 11415550 11415551 chr2R 11418674 11418695 opus 4 3133 2.5 5.0 3.8 0.8 3145 chr2R 11415550 intron Drip - chr2R 11417122 intron Drip - chr2R 11418695 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-439 631 chr2R 11472632 11472677 chr2R 11473849 11473894 pogo 13 1210 4.5 5.0 4.8 2.2 1262 chr2R 11472632 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473894 intergenic not near genes chr2R_13_11470001 chr2R_11470001 RAL-439 632 chr2R 11480785 11480833 chr2R 11480898 11480936 4 110 0.0 3.5 1.8 1.4 151 chr2R 11480785 intron inv + chr2R 11480860 intron inv + chr2R 11480936 intron inv + chr2R_4_11480001 chr2R_11480001 RAL-439 633 chr2R 11494294 11494334 chr2R 11494397 11494427 4 100 1.0 5.0 3.0 1.0 133 chr2R 11494294 intron inv + chr2R 11494360 intron inv + chr2R 11494427 intron inv + chr2R_4_11490001 chr2R_11490001 RAL-439 634 chr2R 11631378 11631411 chr2R 11631477 11631511 10 98 1.0 3.0 2.0 3.3 133 chr2R 11631378 intron CG9005 - chr2R 11631444 intron CG9005 - chr2R 11631511 intron CG9005 - chr2R_10_11630001 chr2R_11630001 RAL-439 635 chr2R 11660351 11660385 chr2R 11660485 11660522 4 135 2.0 1.5 1.8 1.4 171 chr2R 11660351 intron Roc2 - chr2R 11660436 intron Roc2 - chr2R 11660522 intron Roc2 - chr2R_4_11660001 chr2R_11660001 RAL-439 636 chr2R 11668026 11668052 chr2R 11668308 11668342 8 291 0.5 9.5 5.0 1.3 316 chr2R 11668026 intron,intron Roc2 -,Tret1-1 + chr2R 11668184 intron,intron Roc2 -,Tret1-1 + chr2R 11668342 intron,intron Roc2 -,Tret1-1 + chr2R_8_11665001 chr2R_11665001 RAL-439 637 chr2R 11719823 11719859 chr2R 11720034 11720038 6 203 3.5 4.0 3.8 1.2 215 chr2R 11719823 intron pyr + chr2R 11719930 intron pyr + chr2R 11720038 intron pyr + chr2R_6_11715001 chr2R_11715001 RAL-439 638 chr2R 11724147 11724183 chr2R 11724252 11724291 6 100 2.5 3.0 2.8 1.6 144 chr2R 11724147 intron pyr + chr2R 11724219 intron pyr + chr2R 11724291 intron pyr + chr2R_6_11720001 chr2R_11720001 RAL-439 639 chr2R 11754377 11754407 chr2R 11754468 11754513 12 100 5.0 4.0 4.5 2.2 136 chr2R 11754377 intergenic not near genes chr2R 11754445 intergenic not near genes chr2R 11754513 intergenic not near genes chr2R_12_11750001 chr2R_11750001 RAL-439 640 chr2R 11945881 11945909 chr2R 11945968 11945996 8 89 3.0 5.0 4.0 1.6 115 chr2R 11945881 intron CG13188 + chr2R 11945938 intron CG13188 + chr2R 11945996 intron CG13188 + chr2R_8_11945001 chr2R_11945001 RAL-439 641 chr2R 11999415 11999462 chr2R 11999509 11999526 15 87 1.0 4.5 2.8 3.9 111 chr2R 11999415 intergenic not near genes chr2R 11999470 intergenic not near genes chr2R 11999526 intergenic not near genes chr2R_15_11995001 chr2R_11995001 RAL-439 642 chr2R 12004194 12004219 chr2R 12004284 12004309 8 98 0.5 2.5 1.5 3.2 115 chr2R 12004194 exon otk - chr2R 12004252 intron otk - chr2R 12004309 intron otk - chr2R_8_12000001 chr2R_12000001 RAL-439 643 chr2R 12093930 12093979 chr2R 12094063 12094107 8 126 6.0 2.0 4.0 1.6 177 chr2R 12093930 intron jeb - chr2R 12094018 intron jeb - chr2R 12094107 intron jeb - chr2R_8_12090001 chr2R_12090001 RAL-439 644 chr2R 12124820 12124835 chr2R 12124924 12124932 4 102 4.5 1.0 2.8 1.1 112 chr2R 12124820 intergenic not near genes chr2R 12124876 intergenic not near genes chr2R 12124932 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-439 645 chr2R 12185987 12186037 chr2R 12186097 12186147 26 102 9.0 14.5 11.8 2.0 160 chr2R 12185987 intron Cyp6g1 + chr2R 12186067 intron Cyp6g1 + chr2R 12186147 intron Cyp6g1 + chr2R_26_12185001 chr2R_12185001 RAL-439 646 chr2R 12285373 12285409 chr2R 12285490 12285526 8 113 4.0 0.0 2.0 2.7 153 chr2R 12285373 intron CG42700 + chr2R 12285450 intron CG42700 + chr2R 12285526 intron CG42700 + chr2R_8_12285001 chr2R_12285001 RAL-439 647 chr2R 12334868 12334902 chr2R 12334966 12334985 4 92 6.0 4.0 5.0 0.7 117 chr2R 12334868 intergenic CG8490 + chr2R 12334926 intergenic CG8490 + chr2R 12334985 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-439 648 chr2R 12363368 12363390 chr2R 12363820 12363842 10 451 7.0 0.0 3.5 2.2 474 chr2R 12363368 intergenic CG30043 + chr2R 12363605 intergenic CG30043 + chr2R 12363842 intergenic not near genes chr2R_10_12360001 chr2R_12360001 RAL-439 649 chr2R 12363392 12363410 chr2R 12363811 12363841 12 438 4.0 0.0 2.0 4.0 449 chr2R 12363392 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363841 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-439 650 chr2R 12548547 12548554 chr2R 12548599 12548634 4 74 0.5 4.0 2.2 1.2 87 chr2R 12548547 intron fra + chr2R 12548590 intron fra + chr2R 12548634 intron fra + chr2R_4_12545001 chr2R_12545001 RAL-439 651 chr2R 12565562 12565572 chr2R 12565965 12565975 7 402 1.0 7.0 4.0 1.4 413 chr2R 12565562 intergenic not near genes chr2R 12565768 intergenic Cyp301a1 + chr2R 12565975 intergenic Cyp301a1 + chr2R_7_12565001 chr2R_12565001 RAL-439 652 chr2R 12565575 12565594 chr2R 12565963 12565997 8 401 0.5 7.0 3.8 1.7 422 chr2R 12565575 intergenic not near genes chr2R 12565786 intergenic Cyp301a1 + chr2R 12565997 intergenic Cyp301a1 + chr2R_8_12565001 chr2R_12565001 RAL-439 653 chr2R 12602825 12602836 chr2R 12602909 12602930 6 98 0.0 6.5 3.2 1.4 105 chr2R 12602825 intron Amph + chr2R 12602878 intron Amph + chr2R 12602930 intron Amph + chr2R_6_12600001 chr2R_12600001 RAL-439 654 chr2R 12625975 12626026 chr2R 12626136 12626164 6 148 0.0 5.5 2.8 1.6 189 chr2R 12625975 5` UTR CG17760 + chr2R 12626070 5` UTR CG17760 + chr2R 12626164 intron CG17760 + chr2R_6_12625001 chr2R_12625001 RAL-439 655 chr2R 12627488 12627501 chr2R 12627593 12627614 7 111 0.0 5.5 2.8 1.8 126 chr2R 12627488 intron CG17760 + chr2R 12627551 intron CG17760 + chr2R 12627614 exon CG17760 + chr2R_7_12625001 chr2R_12625001 RAL-439 656 chr2R 12707510 12707535 chr2R 12715896 12715920 roo 7 8384 1.5 5.0 3.2 1.7 8410 chr2R 12707510 intron CG42663 + chr2R 12711715 intron CG42663 + chr2R 12715920 intron CG42663 + chr2R_7_12710001 chr2R_12710001 RAL-439 657 chr2R 12707541 12707546 chr2R 12715892 12715932 roo 5 8376 1.0 5.0 3.0 1.2 8391 chr2R 12707541 intron CG42663 + chr2R 12711736 intron CG42663 + chr2R 12715932 intron CG42663 + chr2R_5_12710001 chr2R_12710001 RAL-439 658 chr2R 12774237 12774253 chr2R 12774330 12774343 5 98 2.0 0.0 1.0 2.5 106 chr2R 12774237 intergenic not near genes chr2R 12774290 intergenic not near genes chr2R 12774343 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-439 659 chr2R 12808321 12808345 chr2R 12808416 12808437 9 100 4.0 4.0 4.0 1.8 116 chr2R 12808321 intergenic not near genes chr2R 12808379 intergenic not near genes chr2R 12808437 intergenic not near genes chr2R_9_12805001 chr2R_12805001 RAL-439 660 chr2R 12834142 12834192 chr2R 12834245 12834295 19 101 5.5 7.5 6.5 2.5 153 chr2R 12834142 intergenic not near genes chr2R 12834218 intergenic not near genes chr2R 12834295 intergenic not near genes chr2R_19_12830001 chr2R_12830001 RAL-439 661 chr2R 12887358 12887406 chr2R 12887629 12887677 9 270 3.5 6.0 4.8 1.6 319 chr2R 12887358 intron vg + chr2R 12887518 intron vg + chr2R 12887677 intron vg + chr2R_9_12885001 chr2R_12885001 RAL-439 662 chr2R 13043033 13043063 chr2R 13043133 13043162 8 99 0.0 3.0 1.5 3.2 129 chr2R 13043033 intergenic not near genes chr2R 13043098 intergenic not near genes chr2R 13043162 intergenic not near genes chr2R_8_13040001 chr2R_13040001 RAL-439 663 chr2R 13136841 13136868 chr2R 13141639 13141659 Doc 4 4800 2.0 0.5 1.2 1.8 4818 chr2R 13136841 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141659 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-439 664 chr2R 13167393 13167429 chr2R 13167490 13167531 10 97 5.5 6.0 5.8 1.5 138 chr2R 13167393 intron GLaz - chr2R 13167462 intron GLaz - chr2R 13167531 intron GLaz - chr2R_10_13165001 chr2R_13165001 RAL-439 665 chr2R 13172078 13172123 chr2R 13172176 13172220 8 90 1.0 4.5 2.8 2.1 142 chr2R 13172078 intron AGBE + chr2R 13172149 intron AGBE + chr2R 13172220 intron AGBE + chr2R_8_13170001 chr2R_13170001 RAL-439 666 chr2R 13196553 13196594 chr2R 13197057 13197096 15 502 2.5 5.5 4.0 3.0 543 chr2R 13196553 intergenic not near genes chr2R 13196824 intergenic not near genes chr2R 13197096 intergenic not near genes chr2R_15_13195001 chr2R_13195001 RAL-439 667 chr2R 13268071 13268126 chr2R 13268183 13268238 18 104 4.0 2.5 3.2 4.3 167 chr2R 13268071 3` UTR Dh31-R - chr2R 13268154 3` UTR Dh31-R - chr2R 13268238 3` UTR Dh31-R - chr2R_18_13265001 chr2R_13265001 RAL-439 668 chr2R 13309660 13309683 chr2R 13309793 13309806 8 133 4.0 5.5 4.8 1.4 146 chr2R 13309660 intergenic not near genes chr2R 13309733 intergenic not near genes chr2R 13309806 intergenic not near genes chr2R_8_13305001 chr2R_13305001 RAL-439 669 chr2R 13399794 13399821 chr2R 13399870 13399919 4 79 1.0 0.5 0.8 2.2 125 chr2R 13399794 intergenic CG4744 - chr2R 13399856 intergenic CG4744 - chr2R 13399919 intergenic not near genes chr2R_4_13395001 chr2R_13395001 RAL-439 670 chr2R 13418390 13418409 chr2R 13418502 13418521 7 111 20.0 8.0 14.0 0.5 131 chr2R 13418390 intron CG42321 - chr2R 13418456 intron CG42321 - chr2R 13418521 intron CG42321 - chr2R_7_13415001 chr2R_13415001 RAL-439 671 chr2R 13418412 13418437 chr2R 13418494 13418519 9 92 11.5 5.5 8.5 0.9 107 chr2R 13418412 intron CG42321 - chr2R 13418466 intron CG42321 - chr2R 13418519 intron CG42321 - chr2R_9_13415001 chr2R_13415001 RAL-439 672 chr2R 13431474 13431516 chr2R 13431568 13431604 19 95 6.5 2.0 4.2 3.7 130 chr2R 13431474 intron CG42321 - chr2R 13431539 intron CG42321 - chr2R 13431604 intron CG42321 - chr2R_19_13430001 chr2R_13430001 RAL-439 673 chr2R 13449668 13449670 chr2R 13449755 13449767 5 93 1.5 1.5 1.5 2.0 99 chr2R 13449668 intron cnn - chr2R 13449718 intron cnn - chr2R 13449767 intron cnn - chr2R_5_13445001 chr2R_13445001 RAL-439 674 chr2R 13544547 13544592 chr2R 13544636 13544642 14 76 0.0 4.0 2.0 4.7 95 chr2R 13544547 intron CG6145 - chr2R 13544594 intron CG6145 - chr2R 13544642 intron CG6145 - chr2R_14_13540001 chr2R_13540001 RAL-439 675 chr2R 13566243 13566287 chr2R 13566343 13566370 9 97 3.5 0.5 2.0 3.0 127 chr2R 13566243 intergenic not near genes chr2R 13566306 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-439 676 chr2R 13580483 13580532 chr2R 13580853 13580855 jockey 4 349 1.5 0.5 1.0 2.0 372 chr2R 13580483 3` UTR CG6191 - chr2R 13580669 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580855 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-439 677 chr2R 13728122 13728142 chr2R 13735794 13735819 opus 6 7676 12.0 5.5 8.8 0.6 7697 chr2R 13728122 intron fas + chr2R 13731970 intron fas + chr2R 13735819 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-439 678 chr2R 13728150 13728156 chr2R 13735790 13735828 opus 4 7664 8.5 5.5 7.0 0.5 7678 chr2R 13728150 intron fas + chr2R 13731989 intron fas + chr2R 13735828 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-439 679 chr2R 13749497 13749508 chr2R 13749594 13749617 5 107 4.5 6.0 5.2 0.8 120 chr2R 13749497 intergenic fas + chr2R 13749557 intergenic fas + chr2R 13749617 intergenic fas + chr2R_5_13745001 chr2R_13745001 RAL-439 680 chr2R 13749510 13749526 chr2R 13749589 13749593 4 91 2.5 4.5 3.5 0.9 83 chr2R 13749510 intergenic fas + chr2R 13749552 intergenic fas + chr2R 13749593 intergenic fas + chr2R_4_13745001 chr2R_13745001 RAL-439 681 chr2R 13790317 13790333 chr2R 13790407 13790409 4 88 2.5 0.0 1.2 1.8 92 chr2R 13790317 intergenic not near genes chr2R 13790363 intergenic not near genes chr2R 13790409 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-439 682 chr2R 13905600 13905623 chr2R 13907582 13907605 Rt1a 4 1982 6.0 2.0 4.0 0.8 2005 chr2R 13905600 intron shot - chr2R 13906602 intron shot - chr2R 13907605 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-439 683 chr2R 13925829 13925868 chr2R 13926025 13926029 10 185 6.0 5.0 5.5 1.5 200 chr2R 13925829 intron shot - chr2R 13925929 intron shot - chr2R 13926029 intron shot - chr2R_10_13925001 chr2R_13925001 RAL-439 684 chr2R 14003613 14003645 chr2R 14003724 14003760 8 112 3.5 2.5 3.0 2.0 147 chr2R 14003613 intron mam + chr2R 14003686 intron mam + chr2R 14003760 intron mam + chr2R_8_14000001 chr2R_14000001 RAL-439 685 chr2R 14086653 14086663 chr2R 14086715 14086762 4 83 0.0 3.5 1.8 1.4 109 chr2R 14086653 intron Prosap - chr2R 14086708 intron Prosap - chr2R 14086762 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-439 686 chr2R 14168350 14168397 chr2R 14168459 14168501 19 103 5.5 9.5 7.5 2.2 151 chr2R 14168350 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168426 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168501 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_19_14165001 chr2R_14165001 RAL-439 687 chr2R 14338739 14338787 chr2R 14338865 14338887 7 121 3.0 0.0 1.5 2.8 148 chr2R 14338739 intron Shroom + chr2R 14338813 intron Shroom + chr2R 14338887 intron Shroom + chr2R_7_14335001 chr2R_14335001 RAL-439 688 chr2R 14352693 14352719 chr2R 14352783 14352833 8 101 2.5 2.0 2.2 2.5 140 chr2R 14352693 exon CG8613 + chr2R 14352763 intron CG8613 + chr2R 14352833 intron CG8613 + chr2R_8_14350001 chr2R_14350001 RAL-439 689 chr2R 14357535 14357576 chr2R 14357645 14357686 14 102 6.0 4.0 5.0 2.3 151 chr2R 14357535 intergenic CG8617 -,Arc1 - chr2R 14357610 intergenic Arc1 -,CG8617 - chr2R 14357686 intergenic Arc1 -,CG8617 - chr2R_14_14355001 chr2R_14355001 RAL-439 690 chr2R 14373496 14373529 chr2R 14373582 14373620 7 86 5.0 4.0 4.5 1.3 124 chr2R 14373496 exon Obp50d + chr2R 14373558 exon Obp50d + chr2R 14373620 exon Obp50d + chr2R_7_14370001 chr2R_14370001 RAL-439 691 chr2R 14394208 14394265 chr2R 14399017 14399018 Doc 7 4788 5.5 2.5 4.0 1.4 4810 chr2R 14394208 intergenic not near genes chr2R 14396613 intergenic not near genes chr2R 14399018 intergenic not near genes chr2R_7_14395001 chr2R_14395001 RAL-439 692 chr2R 14434812 14434835 chr2R 14434918 14434923 7 101 3.0 0.0 1.5 2.8 111 chr2R 14434812 intergenic not near genes chr2R 14434868 intergenic not near genes chr2R 14434923 intergenic not near genes chr2R_7_14430001 chr2R_14430001 RAL-439 693 chr2R 14467294 14467326 chr2R 14476469 14476504 roo 9 9174 1.5 3.5 2.5 2.6 9210 chr2R 14467294 intergenic not near genes chr2R 14471899 intergenic not near genes chr2R 14476504 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-439 694 chr2R 14497379 14497410 chr2R 14498555 14498596 1360 7 1175 5.0 2.5 3.8 1.5 1217 chr2R 14497379 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498596 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-439 695 chr2R 14497411 14497415 chr2R 14498553 14498601 1360 4 1162 3.5 2.5 3.0 1.0 1190 chr2R 14497411 3` UTR Cpsf160 - chr2R 14498006 intron Cpsf160 - chr2R 14498601 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-439 696 chr2R 14514465 14514495 chr2R 14514578 14514612 11 111 5.5 8.0 6.8 1.4 147 chr2R 14514465 intron,intron Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514612 intron,intron Cpr51A -,CG30197 + chr2R_11_14510001 chr2R_14510001 RAL-439 697 chr2R 14521773 14521814 chr2R 14522055 14522061 11 271 3.0 6.0 4.5 2.0 288 chr2R 14521773 intergenic not near genes chr2R 14521917 intergenic not near genes chr2R 14522061 intergenic not near genes chr2R_11_14520001 chr2R_14520001 RAL-439 698 chr2R 14525875 14525900 chr2R 14525978 14526000 4 96 10.0 1.0 5.5 0.6 125 chr2R 14525875 intergenic ttv + chr2R 14525938 intergenic ttv + chr2R 14526000 intergenic ttv + chr2R_4_14525001 chr2R_14525001 RAL-439 699 chr2R 14525904 14525913 chr2R 14525977 14526016 6 91 7.5 1.0 4.2 1.2 112 chr2R 14525904 intergenic ttv + chr2R 14525960 intergenic ttv + chr2R 14526016 intergenic ttv + chr2R_6_14525001 chr2R_14525001 RAL-439 700 chr2R 14525914 14525927 chr2R 14525976 14526005 11 83 5.5 1.0 3.2 2.6 91 chr2R 14525914 intergenic ttv + chr2R 14525960 intergenic ttv + chr2R 14526005 intergenic ttv + chr2R_11_14525001 chr2R_14525001 RAL-439 701 chr2R 14530349 14530376 chr2R 14530458 14530475 7 104 3.5 5.5 4.5 1.3 126 chr2R 14530349 intron ttv + chr2R 14530412 intron ttv + chr2R 14530475 intron ttv + chr2R_7_14530001 chr2R_14530001 RAL-439 702 chr2R 14533759 14533769 chr2R 14533861 14533871 6 100 2.5 3.0 2.8 1.6 112 chr2R 14533759 intron ttv + chr2R 14533815 intron ttv + chr2R 14533871 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-439 703 chr2R 14539151 14539168 chr2R 14539390 14539417 5 241 1.5 4.0 2.8 1.3 266 chr2R 14539151 intron ttv + chr2R 14539284 intron ttv + chr2R 14539417 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-439 704 chr2R 14541239 14541256 chr2R 14541485 14541528 5 270 3.5 1.5 2.5 1.4 289 chr2R 14541239 intron ttv + chr2R 14541384 intron ttv + chr2R 14541528 intron ttv + chr2R_5_14540001 chr2R_14540001 RAL-439 705 chr2R 14566429 14566475 chr2R 14566531 14566582 9 101 5.0 1.5 3.2 2.1 153 chr2R 14566429 intron ttv + chr2R 14566506 intron ttv + chr2R 14566582 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-439 706 chr2R 14707056 14707096 chr2R 14707156 14707191 9 93 1.5 4.5 3.0 2.2 135 chr2R 14707056 intron mspo - chr2R 14707124 intron mspo - chr2R 14707191 intron mspo - chr2R_9_14705001 chr2R_14705001 RAL-439 707 chr2R 14780440 14780448 chr2R 14780576 14780593 5 146 2.5 5.5 4.0 1.0 153 chr2R 14780440 intron kn - chr2R 14780516 intron kn - chr2R 14780593 intron kn - chr2R_5_14780001 chr2R_14780001 RAL-439 708 chr2R 14796345 14796361 chr2R 14796437 14796478 5 107 10.5 12.0 11.2 0.4 133 chr2R 14796345 intron kn - chr2R 14796412 intron kn - chr2R 14796478 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-439 709 chr2R 14873669 14873722 chr2R 14875207 14875255 13 1526 8.0 1.0 4.5 2.4 1586 chr2R 14873669 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874462 exon Cyp6a17 + chr2R 14875255 exon Cyp6a17 + chr2R_13_14870001 chr2R_14870001 RAL-439 710 chr2R 14911686 14911728 chr2R 14911824 14911856 13 139 4.0 4.0 4.0 2.6 170 chr2R 14911686 intron CG10249 - chr2R 14911771 intron CG10249 - chr2R 14911856 intron CG10249 - chr2R_13_14910001 chr2R_14910001 RAL-439 711 chr2R 14916535 14916557 chr2R 14916635 14916657 4 100 5.5 1.5 3.5 0.9 122 chr2R 14916535 intron CG10249 - chr2R 14916596 intron CG10249 - chr2R 14916657 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-439 712 chr2R 14917837 14917883 chr2R 14917935 14917988 9 101 3.5 3.0 3.2 2.1 151 chr2R 14917837 intron CG10249 - chr2R 14917912 intron CG10249 - chr2R 14917988 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-439 713 chr2R 14922129 14922171 chr2R 14922225 14922262 12 88 4.5 1.5 3.0 3.0 133 chr2R 14922129 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922262 intron CG10249 - chr2R_12_14920001 chr2R_14920001 RAL-439 714 chr2R 15004721 15004740 chr2R 15005070 15005089 jockey 8 346 5.5 7.0 6.2 1.1 368 chr2R 15004721 intergenic not near genes chr2R 15004905 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-439 715 chr2R 15015445 15015490 chr2R 15022889 15022919 mdg1 8 7438 2.5 5.0 3.8 1.7 7474 chr2R 15015445 intron hbs + chr2R 15019182 intron hbs + chr2R 15022919 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-439 716 chr2R 15094885 15094895 chr2R 15094972 15094992 5 95 7.0 3.0 5.0 0.8 107 chr2R 15094885 intergenic not near genes chr2R 15094938 intergenic not near genes chr2R 15094992 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-439 717 chr2R 15105172 15105209 chr2R 15105284 15105303 11 100 3.5 4.0 3.8 2.3 131 chr2R 15105172 intergenic not near genes chr2R 15105238 intergenic not near genes chr2R 15105303 intergenic not near genes chr2R_11_15105001 chr2R_15105001 RAL-439 718 chr2R 15133470 15133505 chr2R 15133564 15133604 8 96 3.5 3.5 3.5 1.8 134 chr2R 15133470 intron chn + chr2R 15133537 intron chn + chr2R 15133604 intron chn + chr2R_8_15130001 chr2R_15130001 RAL-439 719 chr2R 15134299 15134311 chr2R 15134396 15134408 4 97 0.0 4.5 2.2 1.2 109 chr2R 15134299 intron chn + chr2R 15134354 intron chn + chr2R 15134408 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-439 720 chr2R 15295721 15295739 chr2R 15295833 15295859 5 120 2.5 2.0 2.2 1.6 138 chr2R 15295721 intron Trpm - chr2R 15295790 intron Trpm - chr2R 15295859 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-439 721 chr2R 15296149 15296172 chr2R 15296243 15296275 6 95 4.5 1.5 3.0 1.5 126 chr2R 15296149 intron Trpm - chr2R 15296212 intron Trpm - chr2R 15296275 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-439 722 chr2R 15336290 15336304 chr2R 15336364 15336365 4 73 0.0 2.0 1.0 2.0 75 chr2R 15336290 intron Hr51 + chr2R 15336328 intron Hr51 + chr2R 15336365 intron Hr51 + chr2R_4_15335001 chr2R_15335001 RAL-439 723 chr2R 15685345 15685395 chr2R 15685468 15685508 9 117 1.0 2.5 1.8 3.2 163 chr2R 15685345 intron,exon Ranbp11 +,CG30082 - chr2R 15685426 intron,intron Ranbp11 +,CG30082 - chr2R 15685508 intron,intron Ranbp11 +,CG30082 - chr2R_9_15685001 chr2R_15685001 RAL-439 724 chr2R 15700243 15700277 chr2R 15700349 15700365 12 103 2.5 4.5 3.5 2.7 122 chr2R 15700243 intron,5` UTR CG30080 -,CG42662 - chr2R 15700304 intron,5` UTR CG30080 -,CG42662 - chr2R 15700365 intron,5` UTR CG30080 -,CG42662 - chr2R_12_15700001 chr2R_15700001 RAL-439 725 chr2R 15710429 15710464 chr2R 15710693 15710728 9 261 4.5 5.0 4.8 1.6 299 chr2R 15710429 intergenic not near genes chr2R 15710578 intergenic not near genes chr2R 15710728 intergenic not near genes chr2R_9_15710001 chr2R_15710001 RAL-439 726 chr2R 16224895 16224921 chr2R 16224971 16225022 9 91 1.0 3.5 2.2 2.8 127 chr2R 16224895 exon CG15706 - chr2R 16224958 intron CG15706 - chr2R 16225022 intron CG15706 - chr2R_9_16220001 chr2R_16220001 RAL-439 727 chr2R 16243589 16243623 chr2R 16243710 16243719 12 124 3.5 1.0 2.2 3.8 130 chr2R 16243589 3` UTR CngA - chr2R 16243654 3` UTR CngA - chr2R 16243719 3` UTR CngA - chr2R_12_16240001 chr2R_16240001 RAL-439 728 chr2R 16245393 16245427 chr2R 16245507 16245519 7 109 2.0 4.5 3.2 1.7 126 chr2R 16245393 intron CngA - chr2R 16245456 intron CngA - chr2R 16245519 intron CngA - chr2R_7_16245001 chr2R_16245001 RAL-439 729 chr2R 16279397 16279407 chr2R 16279466 16279475 11 93 0.0 2.0 1.0 5.5 78 chr2R 16279397 intergenic not near genes chr2R 16279436 intergenic not near genes chr2R 16279475 intergenic not near genes chr2R_11_16275001 chr2R_16275001 RAL-439 730 chr2R 16352847 16352868 chr2R 16352950 16352965 5 100 3.5 11.5 7.5 0.6 118 chr2R 16352847 intergenic not near genes chr2R 16352906 intergenic not near genes chr2R 16352965 intergenic not near genes chr2R_5_16350001 chr2R_16350001 RAL-439 731 chr2R 16520996 16521020 chr2R 16521086 16521125 6 96 7.5 2.0 4.8 1.0 129 chr2R 16520996 intron Sema-2a + chr2R 16521060 intron Sema-2a + chr2R 16521125 intron Sema-2a + chr2R_6_16520001 chr2R_16520001 RAL-439 732 chr2R 16538077 16538091 chr2R 16538191 16538205 5 114 3.0 5.0 4.0 1.0 128 chr2R 16538077 intergenic not near genes chr2R 16538141 intergenic not near genes chr2R 16538205 intergenic not near genes chr2R_5_16535001 chr2R_16535001 RAL-439 733 chr2R 16701328 16701342 chr2R 16701460 16701489 7 140 1.5 9.0 5.2 1.1 161 chr2R 16701328 intron CG30463 - chr2R 16701408 intron CG30463 - chr2R 16701489 intron CG30463 - chr2R_7_16700001 chr2R_16700001 RAL-439 734 chr2R 16726655 16726678 chr2R 16726774 16726797 8 116 4.0 7.0 5.5 1.2 142 chr2R 16726655 intron CG30463 - chr2R 16726726 intron CG30463 - chr2R 16726797 intron CG30463 - chr2R_8_16725001 chr2R_16725001 RAL-439 735 chr2R 16775638 16775670 chr2R 16775925 16775957 11 284 4.5 5.0 4.8 1.9 319 chr2R 16775638 3` UTR Arp53D + chr2R 16775798 intergenic Arp53D + chr2R 16775957 intergenic Arp53D + chr2R_11_16775001 chr2R_16775001 RAL-439 736 chr2R 16787457 16787492 chr2R 16787559 16787564 10 93 5.0 2.5 3.8 2.1 107 chr2R 16787457 intron CG5522 + chr2R 16787510 intron CG5522 + chr2R 16787564 intron CG5522 + chr2R_10_16785001 chr2R_16785001 RAL-439 737 chr2R 16930619 16930626 chr2R 16930709 16930719 5 95 0.0 4.5 2.2 1.6 100 chr2R 16930619 intron Pkc53E + chr2R 16930669 intron Pkc53E + chr2R 16930719 intron Pkc53E + chr2R_5_16930001 chr2R_16930001 RAL-439 738 chr2R 16975209 16975222 chr2R 16975285 16975309 6 92 2.5 3.5 3.0 1.5 100 chr2R 16975209 intron Cbp53E + chr2R 16975259 intron Cbp53E + chr2R 16975309 intron Cbp53E + chr2R_6_16975001 chr2R_16975001 RAL-439 739 chr2R 17016414 17016428 chr2R 17016478 17016484 4 69 2.5 1.5 2.0 1.3 70 chr2R 17016414 3` UTR CG8963 - chr2R 17016449 3` UTR CG8963 - chr2R 17016484 3` UTR CG8963 - chr2R_4_17015001 chr2R_17015001 RAL-439 740 chr2R 17147230 17147268 chr2R 17152276 17152279 jockey 10 5040 3.0 2.5 2.8 2.6 5049 chr2R 17147230 intergenic not near genes chr2R 17149754 intergenic not near genes chr2R 17152279 intergenic not near genes chr2R_10_17145001 chr2R_17145001 RAL-439 741 chr2R 17161343 17161360 chr2R 17161570 17161573 4 223 2.5 0.0 1.2 1.8 230 chr2R 17161343 intergenic not near genes chr2R 17161458 intergenic not near genes chr2R 17161573 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-439 742 chr2R 17176352 17176383 chr2R 17182549 17182578 diver 15 6206 1.5 9.0 5.2 2.4 6226 chr2R 17176352 intergenic not near genes chr2R 17179465 intergenic not near genes chr2R 17182578 intergenic not near genes chr2R_15_17175001 chr2R_17175001 RAL-439 743 chr2R 17236496 17236522 chr2R 17241715 17241746 copia 5 5221 2.0 2.5 2.2 1.6 5250 chr2R 17236496 intron mbl + chr2R 17239121 intron mbl + chr2R 17241746 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-439 744 chr2R 17273091 17273129 chr2R 17273194 17273197 13 95 1.0 3.0 2.0 4.3 106 chr2R 17273091 intron mbl + chr2R 17273144 intron mbl + chr2R 17273197 intron mbl + chr2R_13_17270001 chr2R_17270001 RAL-439 745 chr2R 17331692 17331724 chr2R 17331787 17331790 10 88 2.5 1.5 2.0 3.3 98 chr2R 17331692 intron mbl + chr2R 17331741 intron mbl + chr2R 17331790 intron mbl + chr2R_10_17330001 chr2R_17330001 RAL-439 746 chr2R 17395265 17395316 chr2R 17395358 17395396 6 98 2.0 0.5 1.2 2.7 131 chr2R 17395265 intron Sip1 + chr2R 17395330 intron Sip1 + chr2R 17395396 intron Sip1 + chr2R_6_17395001 chr2R_17395001 RAL-439 747 chr2R 17458986 17459037 chr2R 17459091 17459126 19 99 5.5 8.0 6.8 2.4 140 chr2R 17458986 intron CG14478 + chr2R 17459056 intron CG14478 + chr2R 17459126 intron CG14478 + chr2R_19_17455001 chr2R_17455001 RAL-439 748 chr2R 17485917 17485947 chr2R 17490700 17490735 F-element 6 4783 3.5 6.0 4.8 1.0 4818 chr2R 17485917 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488326 intron NT5E-2 + chr2R 17490735 intron NT5E-2 + chr2R_6_17485001 chr2R_17485001 RAL-439 749 chr2R 17708381 17708423 chr2R 17708482 17708524 10 98 3.5 6.5 5.0 1.7 143 chr2R 17708381 intron CG6424 - chr2R 17708452 intron CG6424 - chr2R 17708524 intron CG6424 - chr2R_10_17705001 chr2R_17705001 RAL-439 750 chr2R 17709959 17710112 chr2R 17710070 17710202 18 98 1.0 0.5 0.8 10.0 243 chr2R 17709959 intron CG6424 - chr2R 17710080 intron CG6424 - chr2R 17710202 intron CG6424 - chr2R_18_17710001 chr2R_17710001 RAL-439 751 chr2R 17782344 17782372 chr2R 17783565 17783585 pogo 5 1219 11.0 5.0 8.0 0.6 1241 chr2R 17782344 intergenic CG33981 -,fab1 - chr2R 17782964 intergenic not near genes chr2R 17783585 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-439 752 chr2R 17782380 17782394 chr2R 17783564 17783582 pogo 6 1210 4.5 4.5 4.5 1.1 1202 chr2R 17782380 intergenic CG33981 -,fab1 - chr2R 17782981 intergenic not near genes chr2R 17783582 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-439 753 chr2R 17784007 17784027 chr2R 17784266 17784276 pogo 6 256 5.0 2.0 3.5 1.3 269 chr2R 17784007 intergenic mir-31a - chr2R 17784142 intergenic mir-31a - chr2R 17784276 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-439 754 chr2R 17805698 17805736 chr2R 17805946 17805984 7 245 4.5 0.5 2.5 2.0 286 chr2R 17805698 intron grh + chr2R 17805841 intron grh + chr2R 17805984 intron grh + chr2R_7_17805001 chr2R_17805001 RAL-439 755 chr2R 17846769 17846809 chr2R 17846873 17846873 6 96 1.5 4.0 2.8 1.6 104 chr2R 17846769 intron,5` UTR olf186-F +,olf186-M + chr2R 17846821 intron,5` UTR olf186-F +,olf186-M + chr2R 17846873 intron,5` UTR olf186-F +,olf186-M + chr2R_6_17845001 chr2R_17845001 RAL-439 756 chr2R 17897464 17897483 chr2R 17897571 17897574 4 112 1.5 0.0 0.8 2.2 110 chr2R 17897464 intron Elk + chr2R 17897519 intron Elk + chr2R 17897574 intron Elk + chr2R_4_17895001 chr2R_17895001 RAL-439 757 chr2R 18074588 18074620 chr2R 18074678 18074710 5 84 6.5 7.0 6.8 0.6 122 chr2R 18074588 intron CG34386 + chr2R 18074649 intron CG34386 + chr2R 18074710 intron CG34386 + chr2R_5_18070001 chr2R_18070001 RAL-439 758 chr2R 18111695 18111714 chr2R 18115563 18115589 F-element 7 3881 2.0 4.0 3.0 1.8 3894 chr2R 18111695 intergenic not near genes chr2R 18113642 intergenic not near genes chr2R 18115589 intergenic not near genes chr2R_7_18110001 chr2R_18110001 RAL-439 759 chr2R 18124327 18124335 chr2R 18124419 18124432 6 92 13.5 4.0 8.8 0.6 105 chr2R 18124327 intron stau - chr2R 18124380 intron stau - chr2R 18124432 intron stau - chr2R_6_18120001 chr2R_18120001 RAL-439 760 chr2R 18124339 18124370 chr2R 18124415 18124425 16 78 5.0 3.5 4.2 3.1 86 chr2R 18124339 intron stau - chr2R 18124382 intron stau - chr2R 18124425 intron stau - chr2R_16_18120001 chr2R_18120001 RAL-439 761 chr2R 18308293 18308311 chr2R 18308389 18308437 8 116 2.0 1.5 1.8 2.9 144 chr2R 18308293 intron sbb - chr2R 18308365 intron sbb - chr2R 18308437 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-439 762 chr2R 18358375 18358391 chr2R 18372607 18372622 roo 8 14232 4.0 6.0 5.0 1.3 14247 chr2R 18358375 intergenic not near genes chr2R 18365498 intergenic not near genes chr2R 18372622 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-439 763 chr2R 18358392 18358417 chr2R 18372603 18372619 roo 13 14226 3.5 5.5 4.5 2.4 14227 chr2R 18358392 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372619 intergenic not near genes chr2R_13_18365001 chr2R_18365001 RAL-439 764 chr2R 18390848 18390906 chr2R 18390955 18390963 6 84 1.5 4.5 3.0 1.5 115 chr2R 18390848 intergenic CG15068 - chr2R 18390906 intergenic CG15068 - chr2R 18390963 intergenic CG15068 - chr2R_6_18390001 chr2R_18390001 RAL-439 765 chr2R 18392046 18392059 chr2R 18392155 18392162 6 117 0.5 2.0 1.2 2.7 116 chr2R 18392046 intergenic not near genes chr2R 18392104 intergenic not near genes chr2R 18392162 intergenic not near genes chr2R_6_18390001 chr2R_18390001 RAL-439 766 chr2R 18392061 18392066 chr2R 18392154 18392202 6 115 0.5 2.0 1.2 2.7 141 chr2R 18392061 intergenic not near genes chr2R 18392132 intergenic not near genes chr2R 18392202 intergenic not near genes chr2R_6_18390001 chr2R_18390001 RAL-439 767 chr2R 18404794 18404829 chr2R 18404882 18404924 11 85 2.0 2.5 2.2 3.4 130 chr2R 18404794 exon GstE5 + chr2R 18404859 exon GstE5 + chr2R 18404924 exon GstE5 + chr2R_11_18400001 chr2R_18400001 RAL-439 768 chr2R 18405730 18405785 chr2R 18405830 18405885 10 96 3.5 0.0 1.8 3.6 155 chr2R 18405730 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405885 intergenic GstE6 + chr2R_10_18405001 chr2R_18405001 RAL-439 769 chr2R 18471903 18471929 chr2R 18471999 18472025 5 95 2.0 5.0 3.5 1.1 122 chr2R 18471903 intron CG30116 - chr2R 18471964 intron CG30116 - chr2R 18472025 intron CG30116 - chr2R_5_18470001 chr2R_18470001 RAL-439 770 chr2R 18480442 18480522 chr2R 18480569 18480628 4 122 0.0 0.0 0.0 4.0 186 chr2R 18480442 intron CG30116 - chr2R 18480535 intron CG30116 - chr2R 18480628 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-439 771 chr2R 18511607 18511614 chr2R 18511713 18511720 4 106 2.5 11.0 6.8 0.5 113 chr2R 18511607 intergenic not near genes chr2R 18511664 intergenic not near genes chr2R 18511720 intergenic not near genes chr2R_4_18510001 chr2R_18510001 RAL-439 772 chr2R 18528196 18528221 chr2R 18528277 18528295 5 78 4.0 2.0 3.0 1.2 99 chr2R 18528196 intron CG10924 + chr2R 18528246 intron CG10924 + chr2R 18528295 intron CG10924 + chr2R_5_18525001 chr2R_18525001 RAL-439 773 chr2R 18575806 18575824 chr2R 18581987 18582012 3S18 7 6191 0.5 3.0 1.8 2.5 6206 chr2R 18575806 intron GEFmeso - chr2R 18578909 intron GEFmeso - chr2R 18582012 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-439 774 chr2R 18590880 18590900 chr2R 18600020 18600057 roo 6 9146 1.5 2.5 2.0 2.0 9177 chr2R 18590880 intron GEFmeso - chr2R 18595468 intron GEFmeso - chr2R 18600057 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-439 775 chr2R 18736773 18736780 chr2R 18736918 18736925 5 145 7.0 8.5 7.8 0.6 152 chr2R 18736773 intron Hs3st-A + chr2R 18736849 intron Hs3st-A + chr2R 18736925 intron Hs3st-A + chr2R_5_18735001 chr2R_18735001 RAL-439 776 chr2R 18778192 18778235 chr2R 18778302 18778309 5 94 1.0 2.5 1.8 1.8 117 chr2R 18778192 intergenic not near genes chr2R 18778250 intergenic not near genes chr2R 18778309 intergenic not near genes chr2R_5_18775001 chr2R_18775001 RAL-439 777 chr2R 18778597 18778607 chr2R 18778710 18778725 5 117 3.0 1.0 2.0 1.7 128 chr2R 18778597 intergenic not near genes chr2R 18778661 intergenic not near genes chr2R 18778725 intergenic not near genes chr2R_5_18775001 chr2R_18775001 RAL-439 778 chr2R 18808142 18808146 chr2R 18808237 18808237 7 95 12.5 2.0 7.2 0.9 95 chr2R 18808142 intergenic CG15096 - chr2R 18808190 intergenic CG15096 - chr2R 18808237 intergenic CG15096 - chr2R_7_18805001 chr2R_18805001 RAL-439 779 chr2R 18808150 18808186 chr2R 18808236 18808277 8 85 6.5 2.0 4.2 1.5 127 chr2R 18808150 intergenic CG15096 - chr2R 18808214 intergenic CG15096 - chr2R 18808277 intergenic CG15096 - chr2R_8_18805001 chr2R_18805001 RAL-439 780 chr2R 18857391 18857403 chr2R 18857487 18857499 5 96 1.5 11.5 6.5 0.7 108 chr2R 18857391 exon Jheh2 - chr2R 18857445 intron Jheh2 - chr2R 18857499 intron Jheh2 - chr2R_5_18855001 chr2R_18855001 RAL-439 781 chr2R 18926489 18926527 chr2R 18926596 18926634 13 102 1.0 2.0 1.5 5.2 145 chr2R 18926489 intron sano + chr2R 18926562 intron sano + chr2R 18926634 intron sano + chr2R_13_18925001 chr2R_18925001 RAL-439 782 chr2R 18930435 18930481 chr2R 18930548 18930579 12 110 6.0 7.5 6.8 1.5 144 chr2R 18930435 intron sano + chr2R 18930507 intron sano + chr2R 18930579 intron sano + chr2R_12_18930001 chr2R_18930001 RAL-439 783 chr2R 18953151 18953185 chr2R 18953258 18953292 6 107 1.5 6.5 4.0 1.2 141 chr2R 18953151 intron sano + chr2R 18953222 intron sano + chr2R 18953292 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-439 784 chr2R 18953186 18953192 chr2R 18953247 18953286 4 92 1.0 5.0 3.0 1.0 100 chr2R 18953186 intron sano + chr2R 18953236 intron sano + chr2R 18953286 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-439 785 chr2R 19012923 19012967 chr2R 19013037 19013080 4 108 5.5 3.5 4.5 0.7 157 chr2R 19012923 intergenic not near genes chr2R 19013002 intergenic not near genes chr2R 19013080 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-439 786 chr2R 19026042 19026059 chr2R 19026188 19026205 4 146 4.5 5.0 4.8 0.7 163 chr2R 19026042 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026205 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-439 787 chr2R 19067716 19067754 chr2R 19067812 19067814 8 92 3.5 4.0 3.8 1.7 98 chr2R 19067716 intron 5-HT1A + chr2R 19067765 intron 5-HT1A + chr2R 19067814 intron 5-HT1A + chr2R_8_19065001 chr2R_19065001 RAL-439 788 chr2R 19104869 19104908 chr2R 19104994 19105033 8 124 3.5 7.0 5.2 1.3 164 chr2R 19104869 intron 5-HT1A + chr2R 19104951 intron 5-HT1A + chr2R 19105033 intron 5-HT1A + chr2R_8_19100001 chr2R_19100001 RAL-439 789 chr2R 19297723 19297759 chr2R 19297821 19297857 6 97 6.0 4.5 5.2 1.0 134 chr2R 19297723 intron Tab2 + chr2R 19297790 intron Tab2 + chr2R 19297857 intron Tab2 + chr2R_6_19295001 chr2R_19295001 RAL-439 790 chr2R 19297760 19297773 chr2R 19297820 19297866 6 80 4.0 4.5 4.2 1.2 106 chr2R 19297760 intron Tab2 + chr2R 19297813 intron Tab2 + chr2R 19297866 intron Tab2 + chr2R_6_19295001 chr2R_19295001 RAL-439 791 chr2R 19376115 19376142 chr2R 19376328 19376355 5 209 0.5 4.5 2.5 1.4 240 chr2R 19376115 intron CG10062 + chr2R 19376235 intron CG10062 + chr2R 19376355 intron CG10062 + chr2R_5_19375001 chr2R_19375001 RAL-439 792 chr2R 19555583 19555608 chr2R 19555682 19555712 6 94 1.0 5.5 3.2 1.4 129 chr2R 19555583 intron sm - chr2R 19555648 intron sm - chr2R 19555712 intron sm - chr2R_6_19555001 chr2R_19555001 RAL-439 793 chr2R 19575548 19575577 chr2R 19575646 19575675 10 94 2.5 4.0 3.2 2.4 127 chr2R 19575548 intron sm - chr2R 19575612 intron sm - chr2R 19575675 intron sm - chr2R_10_19575001 chr2R_19575001 RAL-439 794 chr2R 19588737 19588780 chr2R 19588835 19588871 16 97 3.0 1.5 2.2 5.0 134 chr2R 19588737 intron sm - chr2R 19588804 intron sm - chr2R 19588871 intron sm - chr2R_16_19585001 chr2R_19585001 RAL-439 795 chr2R 19773992 19774039 chr2R 19774125 19774165 18 126 5.5 5.5 5.5 2.8 173 chr2R 19773992 intergenic not near genes chr2R 19774078 intergenic not near genes chr2R 19774165 intergenic not near genes chr2R_18_19770001 chr2R_19770001 RAL-439 796 chr2R 19776580 19776619 chr2R 19779918 19779962 jockey 7 3342 2.5 3.5 3.0 1.8 3382 chr2R 19776580 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779962 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-439 797 chr2R 19914830 19914867 chr2R 19922262 19922268 mdg1 4 7423 4.0 1.0 2.5 1.1 7438 chr2R 19914830 intergenic not near genes chr2R 19918549 intergenic not near genes chr2R 19922268 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-439 798 chr2R 20004756 20004779 chr2R 20004858 20004881 4 100 6.0 5.0 5.5 0.6 125 chr2R 20004756 exon CG16898 - chr2R 20004818 exon CG16898 - chr2R 20004881 exon CG16898 - chr2R_4_20000001 chr2R_20000001 RAL-439 799 chr2R 20026168 20026198 chr2R 20026264 20026281 12 102 3.0 2.0 2.5 3.4 113 chr2R 20026168 intergenic not near genes chr2R 20026224 intergenic not near genes chr2R 20026281 intergenic not near genes chr2R_12_20025001 chr2R_20025001 RAL-439 800 chr2R 20069214 20069232 chr2R 20071873 20071873 opus 6 2654 0.0 0.5 0.2 5.0 2659 chr2R 20069214 intergenic not near genes chr2R 20070544 intergenic not near genes chr2R 20071873 intergenic not near genes chr2R_6_20070001 chr2R_20070001 RAL-439 801 chr2R 20069233 20069246 chr2R 20071872 20071906 opus 9 2649 0.0 0.5 0.2 7.5 2673 chr2R 20069233 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071906 intergenic not near genes chr2R_9_20070001 chr2R_20070001 RAL-439 802 chr2R 20080602 20080617 chr2R 20080698 20080714 4 97 0.0 9.0 4.5 0.7 112 chr2R 20080602 intergenic not near genes chr2R 20080658 intergenic not near genes chr2R 20080714 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-439 803 chr2R 20125727 20125748 chr2R 20125813 20125844 9 90 4.5 5.5 5.0 1.5 117 chr2R 20125727 intergenic not near genes chr2R 20125786 intergenic not near genes chr2R 20125844 intergenic not near genes chr2R_9_20125001 chr2R_20125001 RAL-439 804 chr2R 20174640 20174662 chr2R 20174721 20174745 4 81 4.0 0.5 2.2 1.2 105 chr2R 20174640 intergenic not near genes chr2R 20174692 intergenic not near genes chr2R 20174745 intergenic not near genes chr2R_4_20170001 chr2R_20170001 RAL-439 805 chr2R 20218745 20218788 chr2R 20218848 20218866 15 98 3.5 2.0 2.8 3.9 121 chr2R 20218745 intergenic not near genes chr2R 20218806 intergenic not near genes chr2R 20218866 intergenic not near genes chr2R_15_20215001 chr2R_20215001 RAL-439 806 chr2R 20223959 20223984 chr2R 20224039 20224089 8 90 3.0 1.0 2.0 2.7 130 chr2R 20223959 intergenic not near genes chr2R 20224024 intergenic not near genes chr2R 20224089 intergenic not near genes chr2R_8_20220001 chr2R_20220001 RAL-439 807 chr2R 20338742 20338768 chr2R 20338836 20338858 9 91 8.5 0.5 4.5 1.6 116 chr2R 20338742 intergenic not near genes chr2R 20338800 intergenic not near genes chr2R 20338858 intergenic not near genes chr2R_9_20335001 chr2R_20335001 RAL-439 808 chr2R 20389411 20389412 chr2R 20389881 20389901 4 480 2.5 6.0 4.2 0.8 490 chr2R 20389411 intergenic not near genes chr2R 20389656 intergenic not near genes chr2R 20389901 intergenic not near genes chr2R_4_20385001 chr2R_20385001 RAL-439 809 chr2R 20391572 20391619 chr2R 20391671 20391723 7 93 1.5 2.5 2.0 2.3 151 chr2R 20391572 intergenic not near genes chr2R 20391648 intergenic not near genes chr2R 20391723 intergenic not near genes chr2R_7_20390001 chr2R_20390001 RAL-439 810 chr2R 20442954 20442957 chr2R 20443087 20443100 4 132 13.5 20.5 17.0 0.2 146 chr2R 20442954 intron CG12484 + chr2R 20443027 intron CG12484 + chr2R 20443100 intron CG12484 + chr2R_4_20440001 chr2R_20440001 RAL-439 811 chr2R 20475054 20475088 chr2R 20475154 20475158 4 92 0.0 3.5 1.8 1.4 104 chr2R 20475054 intron CG12484 + chr2R 20475106 intron CG12484 + chr2R 20475158 intron CG12484 + chr2R_4_20475001 chr2R_20475001 RAL-439 812 chr2R 20555325 20555332 chr2R 20555437 20555444 4 112 5.0 4.0 4.5 0.7 119 chr2R 20555325 intergenic not near genes chr2R 20555384 intergenic not near genes chr2R 20555444 intergenic not near genes chr2R_4_20555001 chr2R_20555001 RAL-439 813 chr2R 20577082 20577117 chr2R 20577174 20577228 6 96 0.5 2.5 1.5 2.4 146 chr2R 20577082 intron qsm - chr2R 20577155 intron qsm - chr2R 20577228 intron qsm - chr2R_6_20575001 chr2R_20575001 RAL-439 814 chr2R 20578633 20578674 chr2R 20578742 20578778 5 108 1.5 2.5 2.0 1.7 145 chr2R 20578633 intron qsm - chr2R 20578706 intron qsm - chr2R 20578778 intron qsm - chr2R_5_20575001 chr2R_20575001 RAL-439 815 chr2R 20601734 20601753 chr2R 20601813 20601848 6 95 1.0 4.0 2.5 1.7 114 chr2R 20601734 intron bl + chr2R 20601791 intron bl + chr2R 20601848 intron bl + chr2R_6_20600001 chr2R_20600001 RAL-439 816 chr2R 20783294 20783329 chr2R 20788086 20788111 F-element 8 4787 3.0 4.0 3.5 1.8 4817 chr2R 20783294 intergenic not near genes chr2R 20785702 intergenic not near genes chr2R 20788111 intergenic CG43666 - chr2R_8_20785001 chr2R_20785001 RAL-439 817 chr2R 20796045 20796075 chr2R 20796158 20796187 16 124 6.5 1.5 4.0 3.2 142 chr2R 20796045 intergenic not near genes chr2R 20796116 intergenic not near genes chr2R 20796187 intergenic not near genes chr2R_16_20795001 chr2R_20795001 RAL-439 818 chr2R 20870922 20870930 chr2R 20871144 20871158 4 225 1.0 8.5 4.8 0.7 236 chr2R 20870922 intron Ipk1 + chr2R 20871040 intron Ipk1 + chr2R 20871158 intron Ipk1 + chr2R_4_20870001 chr2R_20870001 RAL-439 819 chr2R 20870932 20870956 chr2R 20871140 20871163 13 220 1.0 6.5 3.8 2.7 231 chr2R 20870932 intron Ipk1 + chr2R 20871048 intron Ipk1 + chr2R 20871163 intron Ipk1 + chr2R_13_20870001 chr2R_20870001 RAL-439 820 chr2R 20889533 20889561 chr2R 20889689 20889714 4 154 3.5 3.5 3.5 0.9 181 chr2R 20889533 intron otp - chr2R 20889624 intron otp - chr2R 20889714 intron otp - chr2R_4_20885001 chr2R_20885001 RAL-439 821 chr2R 20942364 20942375 chr2R 20942482 20942483 8 117 0.0 6.0 3.0 2.0 119 chr2R 20942364 intergenic not near genes chr2R 20942424 intergenic not near genes chr2R 20942483 intergenic not near genes chr2R_8_20940001 chr2R_20940001 RAL-439 822 chr2R 20968047 20968087 chr2R 20968143 20968183 16 93 3.0 3.0 3.0 4.0 136 chr2R 20968047 intergenic not near genes chr2R 20968115 intergenic not near genes chr2R 20968183 intergenic not near genes chr2R_16_20965001 chr2R_20965001 RAL-439 823 chr2R 21040868 21040880 chr2R 21040950 21040971 4 88 3.5 7.5 5.5 0.6 103 chr2R 21040868 intergenic not near genes chr2R 21040920 intergenic not near genes chr2R 21040971 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-439 824 chr2R 21057493 21057517 chr2R 21057569 21057575 5 67 3.0 0.0 1.5 2.0 82 chr2R 21057493 intergenic cpa +,shg - chr2R 21057534 intergenic cpa +,shg - chr2R 21057575 intergenic cpa +,shg - chr2R_5_21055001 chr2R_21055001 RAL-439 825 chr2R 21141114 21141150 chr2R 21141230 21141266 6 114 1.5 8.0 4.8 1.0 152 chr2R 21141114 intron Magi - chr2R 21141190 intron Magi - chr2R 21141266 intron Magi - chr2R_6_21140001 chr2R_21140001 RAL-439 826 chr2R 21158874 21158911 chr2R 21159018 21159055 13 143 1.0 5.0 3.0 3.2 181 chr2R 21158874 intron CG30389 - chr2R 21158964 intron CG30389 - chr2R 21159055 intron CG30389 - chr2R_13_21155001 chr2R_21155001 RAL-439 827 chr2R 21188207 21188248 chr2R 21188303 21188337 7 90 3.5 5.0 4.2 1.3 130 chr2R 21188207 exon tud + chr2R 21188272 intron tud + chr2R 21188337 intron tud + chr2R_7_21185001 chr2R_21185001 RAL-439 828 chr2R 21241202 21241236 chr2R 21241566 21241607 5 368 2.0 6.0 4.0 1.0 405 chr2R 21241202 intron ASPP - chr2R 21241404 intron ASPP - chr2R 21241607 intron ASPP - chr2R_5_21240001 chr2R_21240001 RAL-439 829 chr2R 21360867 21360878 chr2R 21360945 21360975 6 82 1.0 3.0 2.0 2.0 108 chr2R 21360867 intron cv-2 - chr2R 21360921 intron cv-2 - chr2R 21360975 intron cv-2 - chr2R_6_21360001 chr2R_21360001 RAL-439 830 chr2R 21370501 21370524 chr2R 21370628 21370644 6 124 3.0 1.0 2.0 2.0 143 chr2R 21370501 intron cv-2 - chr2R 21370572 intron cv-2 - chr2R 21370644 intron cv-2 - chr2R_6_21370001 chr2R_21370001 RAL-439 831 chr2R 21608261 21608310 chr2R 21608396 21608445 12 122 1.0 6.0 3.5 2.7 184 chr2R 21608261 5` UTR CR43243 + chr2R 21608353 5` UTR CR43243 + chr2R 21608445 5` UTR,3` UTR CR43243 +,CG15673 - chr2R_12_21605001 chr2R_21605001 RAL-439 832 chr2R 21753091 21753116 chr2R 21753571 21753611 roo 9 499 2.0 6.5 4.2 1.7 520 chr2R 21753091 intergenic not near genes chr2R 21753351 intergenic not near genes chr2R 21753611 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-439 833 chr2R 21797296 21797335 chr2R 21797396 21797435 10 94 3.0 2.0 2.5 2.9 139 chr2R 21797296 intergenic CG34204 + chr2R 21797366 intergenic CG34204 + chr2R 21797435 intergenic CG34204 + chr2R_10_21795001 chr2R_21795001 RAL-439 834 chr2R 21805809 21805855 chr2R 21805906 21805938 12 89 6.5 3.5 5.0 2.0 129 chr2R 21805809 intergenic not near genes chr2R 21805874 intergenic not near genes chr2R 21805938 intergenic not near genes chr2R_12_21805001 chr2R_21805001 RAL-439 835 chr2R 21809505 21809512 chr2R 21817765 21817772 roo 4 8260 10.5 4.5 7.5 0.5 8267 chr2R 21809505 intergenic not near genes chr2R 21813638 intergenic not near genes chr2R 21817772 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-439 836 chr2R 21886149 21886159 chr2R 21886213 21886244 4 77 4.5 0.0 2.2 1.2 95 chr2R 21886149 intron Fili + chr2R 21886196 intron Fili + chr2R 21886244 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-439 837 chr2R 21888299 21888321 chr2R 21888409 21888426 5 106 4.5 3.0 3.8 1.0 127 chr2R 21888299 intron Fili + chr2R 21888362 intron Fili + chr2R 21888426 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-439 838 chr2R 21906261 21906295 chr2R 21906373 21906411 7 116 2.5 6.0 4.2 1.3 150 chr2R 21906261 intron Fili + chr2R 21906336 intron Fili + chr2R 21906411 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-439 839 chr2R 21928493 21928527 chr2R 21928586 21928593 8 87 2.0 3.5 2.8 2.1 100 chr2R 21928493 intron Fili + chr2R 21928543 intron Fili + chr2R 21928593 intron Fili + chr2R_8_21925001 chr2R_21925001 RAL-439 840 chr2R 21932246 21932281 chr2R 21932325 21932372 9 89 2.0 3.5 2.8 2.4 126 chr2R 21932246 intron Fili + chr2R 21932309 intron Fili + chr2R 21932372 intron Fili + chr2R_9_21930001 chr2R_21930001 RAL-439 841 chr2R 22029509 22029530 chr2R 22029607 22029628 8 98 7.0 0.5 3.8 1.7 119 chr2R 22029509 intron CG34370 - chr2R 22029568 intron CG34370 - chr2R 22029628 intron CG34370 - chr2R_8_22025001 chr2R_22025001 RAL-439 842 chr2R 22037761 22037804 chr2R 22037856 22037901 5 100 4.0 0.5 2.2 1.6 140 chr2R 22037761 intron CG34370 - chr2R 22037831 intron CG34370 - chr2R 22037901 intron CG34370 - chr2R_5_22035001 chr2R_22035001 RAL-439 843 chr2R 22072681 22072690 chr2R 22072786 22072795 9 104 7.5 7.0 7.2 1.1 114 chr2R 22072681 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-439 844 chr2R 22072692 22072711 chr2R 22072782 22072801 6 99 6.0 6.5 6.2 0.8 109 chr2R 22072692 intron CG11474 - chr2R 22072746 intron CG11474 - chr2R 22072801 exon CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-439 845 chr2R 22185671 22185709 chr2R 22185790 22185807 15 111 2.0 1.0 1.5 6.0 136 chr2R 22185671 3` UTR MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_15_22185001 chr2R_22185001 RAL-439 846 chr2R 22360370 22360396 chr2R 22360821 22360824 jockey 7 446 6.0 2.0 4.0 1.4 454 chr2R 22360370 intron Liprin-gamma - chr2R 22360597 intron Liprin-gamma - chr2R 22360824 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-439 847 chr2R 22377835 22377839 chr2R 22377918 22377936 4 91 2.0 6.0 4.0 0.8 101 chr2R 22377835 3` UTR Rtf1 + chr2R 22377886 3` UTR Rtf1 + chr2R 22377936 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-439 848 chr2R 22411480 22411525 chr2R 22411570 22411598 12 87 2.0 3.5 2.8 3.2 118 chr2R 22411480 5` UTR qkr58E-3 - chr2R 22411539 5` UTR qkr58E-3 - chr2R 22411598 intergenic qkr58E-3 -,Mes4 + chr2R_12_22410001 chr2R_22410001 RAL-439 849 chr2R 22420497 22420505 chr2R 22420595 22420598 6 97 4.5 0.0 2.2 1.9 101 chr2R 22420497 intergenic mRpS29 - chr2R 22420548 intergenic mRpS29 -,rad50 + chr2R 22420598 intergenic mRpS29 -,rad50 + chr2R_6_22420001 chr2R_22420001 RAL-439 850 chr2R 22465302 22465351 chr2R 22465510 22465538 BS 10 208 0.0 5.0 2.5 2.9 236 chr2R 22465302 intron CG10384 + chr2R 22465420 intron CG10384 + chr2R 22465538 intron CG10384 + chr2R_10_22465001 chr2R_22465001 RAL-439 851 chr2R 22503795 22503806 chr2R 22503896 22503899 5 104 3.0 4.0 3.5 1.1 104 chr2R 22503795 intron px - chr2R 22503847 intron px - chr2R 22503899 intron px - chr2R_5_22500001 chr2R_22500001 RAL-439 852 chr2R 22575595 22575627 chr2R 22575681 22575726 8 92 0.0 4.0 2.0 2.7 131 chr2R 22575595 intron dnr1 - chr2R 22575660 intron dnr1 - chr2R 22575726 intron dnr1 - chr2R_8_22575001 chr2R_22575001 RAL-439 853 chr2R 22623433 22623481 chr2R 22623593 22623636 9 145 5.0 3.0 4.0 1.8 203 chr2R 22623433 intron CG33143 + chr2R 22623534 intron CG33143 + chr2R 22623636 intron CG33143 + chr2R_9_22620001 chr2R_22620001 RAL-439 854 chr2R 22774963 22774993 chr2R 22775384 22775432 jockey 6 436 5.0 4.0 4.5 1.1 469 chr2R 22774963 intron CG42260 - chr2R 22775198 intron CG42260 - chr2R 22775432 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-439 855 chr2R 22780641 22780674 chr2R 22780757 22780800 5 116 5.5 3.0 4.2 1.0 159 chr2R 22780641 intron CG42260 - chr2R 22780720 intron CG42260 - chr2R 22780800 intron CG42260 - chr2R_5_22780001 chr2R_22780001 RAL-439 856 chr2R 22839473 22839497 chr2R 22839572 22839576 4 85 9.0 0.0 4.5 0.7 103 chr2R 22839473 intergenic CG9825 + chr2R 22839524 intergenic CG9825 + chr2R 22839576 intergenic CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-439 857 chr2R 22912696 22912711 chr2R 22912800 22912838 7 116 1.0 4.0 2.5 2.0 142 chr2R 22912696 exon nahoda + chr2R 22912767 exon nahoda + chr2R 22912838 exon nahoda + chr2R_7_22910001 chr2R_22910001 RAL-439 858 chr2R 22951695 22951868 chr2R 22951855 22951959 9 141 0.0 0.0 0.0 9.0 264 chr2R 22951695 3` UTR CR32835 - chr2R 22951827 3` UTR CR32835 - chr2R 22951959 intron CR32835 - chr2R_9_22950001 chr2R_22950001 RAL-439 859 chr2R 22968119 22968163 chr2R 22968228 22968267 7 102 4.5 1.0 2.8 1.8 148 chr2R 22968119 intergenic not near genes chr2R 22968193 intergenic not near genes chr2R 22968267 intergenic not near genes chr2R_7_22965001 chr2R_22965001 RAL-439 860 chr2R 23000118 23000167 chr2R 23000216 23000247 9 95 3.0 2.5 2.8 2.4 129 chr2R 23000118 intron twi + chr2R 23000182 intron twi + chr2R 23000247 intron twi + chr2R_9_23000001 chr2R_23000001 RAL-439 861 chr2R 23105754 23105775 chr2R 23105940 23105961 6 184 4.5 4.5 4.5 1.1 207 chr2R 23105754 intergenic not near genes chr2R 23105858 intergenic not near genes chr2R 23105961 intergenic not near genes chr2R_6_23105001 chr2R_23105001 RAL-439 862 chr2R 23115493 23115536 chr2R 23116019 23116058 12 527 3.5 3.5 3.5 2.7 565 chr2R 23115493 intergenic not near genes chr2R 23115776 intergenic not near genes chr2R 23116058 intergenic not near genes chr2R_12_23115001 chr2R_23115001 RAL-439 863 chr2R 23356264 23356278 chr2R 23356373 23356382 4 108 9.5 5.0 7.2 0.5 118 chr2R 23356264 3` UTR Rpi + chr2R 23356323 3` UTR Rpi + chr2R 23356382 3` UTR,3` UTR Rpi +,CG3500 - chr2R_4_23355001 chr2R_23355001 RAL-439 864 chr2R 23356290 23356306 chr2R 23356368 23356415 6 100 5.5 4.5 5.0 1.0 125 chr2R 23356290 3` UTR Rpi + chr2R 23356352 3` UTR Rpi + chr2R 23356415 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-439 865 chr2R 23451997 23452031 chr2R 23453047 23453101 16 1057 3.0 7.5 5.2 2.6 1104 chr2R 23451997 intron CG43795 + chr2R 23452549 intron CG43795 + chr2R 23453101 intron CG43795 + chr2R_16_23450001 chr2R_23450001 RAL-439 866 chr2R 23508902 23508934 chr2R 23509039 23509071 7 134 7.5 3.0 5.2 1.1 169 chr2R 23508902 intergenic not near genes chr2R 23508986 intergenic not near genes chr2R 23509071 intergenic not near genes chr2R_7_23505001 chr2R_23505001 RAL-439 867 chr2R 23512647 23512693 chr2R 23512753 23512794 7 102 2.5 1.5 2.0 2.3 147 chr2R 23512647 intergenic CG3906 - chr2R 23512720 intergenic CG3906 - chr2R 23512794 intergenic not near genes chr2R_7_23510001 chr2R_23510001 RAL-439 868 chr2R 23607024 23607193 chr2R 23607122 23607301 17 101 4.0 5.0 4.5 3.1 277 chr2R 23607024 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607301 intron CG17664 - chr2R_17_23605001 chr2R_23605001 RAL-439 869 chr2R 23744755 23744795 chr2R 23744843 23744884 6 91 3.5 3.5 3.5 1.3 129 chr2R 23744755 intron egl - chr2R 23744820 intron egl - chr2R 23744884 intron egl - chr2R_6_23740001 chr2R_23740001 RAL-439 870 chr2R 23986498 23986548 chr2R 23986598 23986638 11 93 2.5 6.0 4.2 2.1 140 chr2R 23986498 intron Phm - chr2R 23986568 intron Phm - chr2R 23986638 intron,5` UTR Phm -,CG30178 + chr2R_11_23985001 chr2R_23985001 RAL-439 871 chr2R 23987648 23987665 chr2R 23987732 23987764 9 94 2.0 2.5 2.2 2.8 116 chr2R 23987648 exon Phm - chr2R 23987706 intron Phm - chr2R 23987764 intron Phm - chr2R_9_23985001 chr2R_23985001 RAL-439 872 chr2R 24177214 24177266 chr2R 24184719 24184740 412 18 7496 10.5 4.5 7.5 2.1 7526 chr2R 24177214 3` UTR Nop60B + chr2R 24180977 intron Nop60B + chr2R 24184740 3` UTR Nop60B + chr2R_18_24180001 chr2R_24180001 RAL-439 873 chr2R 24278305 24278355 chr2R 24278409 24278451 7 96 0.5 2.5 1.5 2.8 146 chr2R 24278305 intron nvy + chr2R 24278378 intron nvy + chr2R 24278451 intron nvy + chr2R_7_24275001 chr2R_24275001 RAL-439 874 chr2R 24336150 24336196 chr2R 24336257 24336271 13 101 3.5 1.5 2.5 3.7 121 chr2R 24336150 intergenic CR44282 - chr2R 24336210 intergenic CR44282 - chr2R 24336271 intergenic CR44282 - chr2R_13_24335001 chr2R_24335001 RAL-439 875 chr2R 24636885 24636911 chr2R 24636989 24637017 7 106 3.5 0.0 1.8 2.5 132 chr2R 24636885 intron CG13594 - chr2R 24636951 intron CG13594 - chr2R 24637017 intron CG13594 - chr2R_7_24635001 chr2R_24635001 RAL-439 876 chr2R 24884033 24884073 chr2R 24884135 24884175 28 99 2.0 6.5 4.2 5.4 142 chr2R 24884033 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884175 intron NKAIN + chr2R_28_24880001 chr2R_24880001 RAL-439 877 chr2R 24927829 24927865 chr2R 24927932 24927968 7 99 7.5 6.0 6.8 0.9 139 chr2R 24927829 intron pain - chr2R 24927898 intron pain - chr2R 24927968 intron pain - chr2R_7_24925001 chr2R_24925001 RAL-439 878 chr2R 25022629 25022667 chr2R 25022733 25022771 9 101 7.0 8.5 7.8 1.0 142 chr2R 25022629 intron uzip + chr2R 25022700 intron uzip + chr2R 25022771 intron uzip + chr2R_9_25020001 chr2R_25020001 RAL-439 879 chr2R 25097875 25097886 chr2R 25097949 25098004 5 101 5.0 2.5 3.8 1.0 129 chr2R 25097875 intron lov - chr2R 25097940 intron lov - chr2R 25098004 intron lov - chr2R_5_25095001 chr2R_25095001 RAL-439 880 chr2R 25141665 25141681 chr2R 25159352 25159386 roo 6 17704 2.0 5.5 3.8 1.2 17721 chr2R 25141665 intergenic not near genes chr2R 25150526 intergenic not near genes chr2R 25159386 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-439 881 chr2R 25193320 25193370 chr2R 25193482 25193532 12 157 2.0 1.5 1.8 4.3 212 chr2R 25193320 intron CG9380 - chr2R 25193426 intron CG9380 - chr2R 25193532 intron CG9380 - chr2R_12_25190001 chr2R_25190001 RAL-439 882 chr2R 25234755 25234797 chr2R 25234855 25234877 12 95 3.5 7.0 5.2 1.9 122 chr2R 25234755 intron CG9380 - chr2R 25234816 intron CG9380 - chr2R 25234877 intron CG9380 - chr2R_12_25230001 chr2R_25230001 RAL-439 883 chr2R 25253436 25253460 chr2R 25253527 25253533 7 89 6.0 6.5 6.2 1.0 97 chr2R 25253436 intron,intron CG9380 -,CG30428 + chr2R 25253484 intron,intron CG9380 -,CG30428 + chr2R 25253533 intron,intron CG9380 -,CG30428 + chr2R_7_25250001 chr2R_25250001 RAL-439 884 chr3L 110192 110234 chr3L 119379 119399 roo 13 9182 6.0 4.0 5.0 2.2 9207 chr3L 110192 intergenic not near genes chr3L 114796 intergenic not near genes chr3L 119399 intergenic not near genes chr3L_13_110001 chr3L_110001 RAL-439 885 chr3L 402712 402714 chr3L 409760 409781 297 4 7059 1.5 10.5 6.0 0.6 7069 chr3L 402712 intergenic not near genes chr3L 406246 intergenic not near genes chr3L 409781 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-439 886 chr3L 494598 494609 chr3L 494668 494706 4 91 4.0 0.0 2.0 1.3 108 chr3L 494598 intron klar - chr3L 494652 intron klar - chr3L 494706 intron klar - chr3L_4_490001 chr3L_490001 RAL-439 887 chr3L 524744 524775 chr3L 524827 524872 8 94 0.5 3.0 1.8 2.9 128 chr3L 524744 intron klar - chr3L 524808 intron klar - chr3L 524872 intron klar - chr3L_8_520001 chr3L_520001 RAL-439 888 chr3L 538128 538130 chr3L 538916 538918 4 788 40.5 11.5 26.0 0.1 790 chr3L 538128 intron klar - chr3L 538523 intron klar - chr3L 538918 intron klar - chr3L_4_535001 chr3L_535001 RAL-439 889 chr3L 538126 538154 chr3L 538919 538947 13 791 48.5 11.5 30.0 0.4 821 chr3L 538126 intron klar - chr3L 538536 intron klar - chr3L 538947 intron klar - chr3L_13_535001 chr3L_535001 RAL-439 890 chr3L 606872 606918 chr3L 606968 607016 6 89 4.5 0.0 2.2 1.9 144 chr3L 606872 intergenic Reg-2 - chr3L 606944 intergenic Reg-2 - chr3L 607016 intergenic Reg-2 - chr3L_6_605001 chr3L_605001 RAL-439 891 chr3L 705880 705930 chr3L 705996 706036 23 114 6.0 6.0 6.0 3.3 156 chr3L 705880 intergenic CG13895 -,CR44514 + chr3L 705958 3` UTR CG13895 - chr3L 706036 3` UTR CG13895 - chr3L_23_705001 chr3L_705001 RAL-439 892 chr3L 789895 789908 chr3L 790400 790411 roo 6 505 6.0 1.0 3.5 1.3 516 chr3L 789895 intergenic not near genes chr3L 790153 intergenic not near genes chr3L 790411 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-439 893 chr3L 832590 832627 chr3L 832697 832733 6 102 5.0 0.5 2.8 1.6 143 chr3L 832590 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832662 intron CG13900 - chr3L 832733 exon CG13900 - chr3L_6_830001 chr3L_830001 RAL-439 894 chr3L 875643 875692 chr3L 875750 875799 5 99 5.5 1.5 3.5 1.1 156 chr3L 875643 intron CG32479 + chr3L 875721 intron CG32479 + chr3L 875799 intron CG32479 + chr3L_5_875001 chr3L_875001 RAL-439 895 chr3L 900000 900004 chr3L 900100 900108 4 103 0.0 8.5 4.2 0.8 108 chr3L 900000 intergenic not near genes chr3L 900054 intergenic not near genes chr3L 900108 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-439 896 chr3L 925183 925210 chr3L 932601 932680 mdg1 11 7462 3.0 0.0 1.5 4.4 7497 chr3L 925183 intron Glut1 + chr3L 928932 intron Glut1 + chr3L 932680 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-439 897 chr3L 932603 932606 chr3L 932700 932703 4 97 0.0 13.0 6.5 0.5 100 chr3L 932603 intron Glut1 + chr3L 932653 intron Glut1 + chr3L 932703 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-439 898 chr3L 933909 933944 chr3L 934017 934067 14 120 4.0 4.5 4.2 2.7 158 chr3L 933909 intron Glut1 + chr3L 933988 intron Glut1 + chr3L 934067 intron Glut1 + chr3L_14_930001 chr3L_930001 RAL-439 899 chr3L 939772 939794 chr3L 940893 940935 jockey 8 1133 4.5 5.5 5.0 1.3 1163 chr3L 939772 intron Glut1 + chr3L 940354 intron Glut1 + chr3L 940935 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-439 900 chr3L 939797 939803 chr3L 940887 940929 jockey 6 1117 5.0 5.0 5.0 1.0 1132 chr3L 939797 intron Glut1 + chr3L 940363 intron Glut1 + chr3L 940929 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-439 901 chr3L 949872 949921 chr3L 949977 950026 23 100 3.5 5.0 4.2 4.4 154 chr3L 949872 intron Glut1 + chr3L 949949 intron Glut1 + chr3L 950026 intron Glut1 + chr3L_23_945001 chr3L_945001 RAL-439 902 chr3L 960998 961044 chr3L 961111 961157 25 110 7.0 7.0 7.0 3.1 159 chr3L 960998 intron Glut1 + chr3L 961078 intron Glut1 + chr3L 961157 intron Glut1 + chr3L_25_960001 chr3L_960001 RAL-439 903 chr3L 1031175 1031193 chr3L 1031283 1031292 4 106 1.5 2.0 1.8 1.4 117 chr3L 1031175 intron trio - chr3L 1031234 intron trio - chr3L 1031292 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-439 904 chr3L 1040532 1040580 chr3L 1040636 1040684 14 101 5.0 3.5 4.2 2.7 152 chr3L 1040532 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040684 intron bab1 - chr3L_14_1040001 chr3L_1040001 RAL-439 905 chr3L 1154118 1154154 chr3L 1163278 1163319 roo 13 9158 2.0 0.5 1.2 5.9 9201 chr3L 1154118 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163319 intron bab2 - chr3L_13_1155001 chr3L_1155001 RAL-439 906 chr3L 1260148 1260163 chr3L 1260236 1260256 5 96 2.0 3.0 2.5 1.4 108 chr3L 1260148 intron CG9134 + chr3L 1260202 intron CG9134 + chr3L 1260256 intron CG9134 + chr3L_5_1260001 chr3L_1260001 RAL-439 907 chr3L 1347159 1347190 chr3L 1347244 1347254 4 84 0.5 2.0 1.2 1.8 95 chr3L 1347159 intron Ptp61F - chr3L 1347206 intron Ptp61F - chr3L 1347254 intron Ptp61F - chr3L_4_1345001 chr3L_1345001 RAL-439 908 chr3L 1372353 1372376 chr3L 1372451 1372474 8 97 3.0 2.5 2.8 2.1 121 chr3L 1372353 intron,intron Ptp61F -,ru + chr3L 1372414 intron,intron Ptp61F -,ru + chr3L 1372474 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-439 909 chr3L 1403135 1403150 chr3L 1403248 1403273 6 116 7.0 2.5 4.8 1.0 138 chr3L 1403135 intron Ptp61F - chr3L 1403204 intron Ptp61F - chr3L 1403273 intron Ptp61F - chr3L_6_1400001 chr3L_1400001 RAL-439 910 chr3L 1506000 1506025 chr3L 1513612 1513613 17.6 6 7607 2.0 4.5 3.2 1.4 7613 chr3L 1506000 intron,intron Psa +,cue - chr3L 1509806 intron,intron Psa +,cue - chr3L 1513613 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-439 911 chr3L 1585910 1585934 chr3L 1586013 1586037 9 100 2.5 0.0 1.2 4.1 127 chr3L 1585910 intron CG13917 + chr3L 1585974 intron CG13917 + chr3L 1586037 intron CG13917 + chr3L_9_1585001 chr3L_1585001 RAL-439 912 chr3L 1585935 1585938 chr3L 1586008 1586041 4 92 2.5 0.0 1.2 1.8 106 chr3L 1585935 intron CG13917 + chr3L 1585988 intron CG13917 + chr3L 1586041 intron CG13917 + chr3L_4_1585001 chr3L_1585001 RAL-439 913 chr3L 1639215 1639242 chr3L 1639400 1639443 8 189 2.0 5.0 3.5 1.8 228 chr3L 1639215 5` UTR metl - chr3L 1639329 intergenic metl -,Bgb + chr3L 1639443 intergenic metl -,Bgb + chr3L_8_1635001 chr3L_1635001 RAL-439 914 chr3L 1740839 1740884 chr3L 1741102 1741146 pogo 9 251 4.0 4.5 4.2 1.7 307 chr3L 1740839 intron Gk + chr3L 1740992 intron Gk + chr3L 1741146 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-439 915 chr3L 1848631 1848659 chr3L 1848719 1848724 10 84 4.0 3.0 3.5 2.2 93 chr3L 1848631 intergenic not near genes chr3L 1848678 intergenic not near genes chr3L 1848724 intergenic not near genes chr3L_10_1845001 chr3L_1845001 RAL-439 916 chr3L 1885161 1885174 chr3L 1885251 1885274 8 96 0.0 5.0 2.5 2.3 113 chr3L 1885161 intergenic Aprt -,Tmhs + chr3L 1885218 intergenic Aprt -,Tmhs + chr3L 1885274 intergenic Aprt -,Tmhs + chr3L_8_1885001 chr3L_1885001 RAL-439 917 chr3L 1885177 1885186 chr3L 1885247 1885286 5 94 0.0 5.0 2.5 1.4 109 chr3L 1885177 intergenic Aprt -,Tmhs + chr3L 1885232 intergenic Aprt -,Tmhs + chr3L 1885286 intergenic Aprt -,Tmhs + chr3L_5_1885001 chr3L_1885001 RAL-439 918 chr3L 2017769 2017786 chr3L 2017856 2017890 4 98 6.5 7.5 7.0 0.5 121 chr3L 2017769 intergenic not near genes chr3L 2017830 intergenic not near genes chr3L 2017890 intergenic not near genes chr3L_4_2015001 chr3L_2015001 RAL-439 919 chr3L 2108234 2108282 chr3L 2113458 2113506 copia 16 5222 4.5 5.5 5.0 2.7 5272 chr3L 2108234 intron sls - chr3L 2110870 intron sls - chr3L 2113506 intron sls - chr3L_16_2110001 chr3L_2110001 RAL-439 920 chr3L 2139185 2139228 chr3L 2139286 2139294 14 93 9.0 2.0 5.5 2.2 109 chr3L 2139185 intron zormin - chr3L 2139240 intron zormin - chr3L 2139294 intron zormin - chr3L_14_2135001 chr3L_2135001 RAL-439 921 chr3L 2168770 2168806 chr3L 2168876 2168903 8 100 1.0 7.0 4.0 1.6 133 chr3L 2168770 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168903 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-439 922 chr3L 2303196 2303244 chr3L 2303357 2303400 8 151 4.0 2.0 3.0 2.0 204 chr3L 2303196 intergenic not near genes chr3L 2303298 intergenic not near genes chr3L 2303400 intergenic not near genes chr3L_8_2300001 chr3L_2300001 RAL-439 923 chr3L 2308002 2308033 chr3L 2308112 2308159 5 118 7.5 3.0 5.2 0.8 157 chr3L 2308002 intergenic not near genes chr3L 2308080 intergenic not near genes chr3L 2308159 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-439 924 chr3L 2321174 2321192 chr3L 2321237 2321284 6 82 0.5 0.5 0.5 4.0 110 chr3L 2321174 intergenic not near genes chr3L 2321229 intergenic not near genes chr3L 2321284 intergenic not near genes chr3L_6_2320001 chr3L_2320001 RAL-439 925 chr3L 2331563 2331607 chr3L 2331660 2331664 8 86 2.0 2.5 2.2 2.5 101 chr3L 2331563 intron MsR1 + chr3L 2331614 intron MsR1 + chr3L 2331664 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-439 926 chr3L 2350384 2350390 chr3L 2350484 2350490 4 100 11.0 7.5 9.2 0.4 106 chr3L 2350384 intergenic not near genes chr3L 2350437 intergenic not near genes chr3L 2350490 intergenic not near genes chr3L_4_2350001 chr3L_2350001 RAL-439 927 chr3L 2350398 2350422 chr3L 2350483 2350522 6 95 5.5 7.0 6.2 0.8 124 chr3L 2350398 intergenic not near genes chr3L 2350460 intergenic not near genes chr3L 2350522 intergenic not near genes chr3L_6_2350001 chr3L_2350001 RAL-439 928 chr3L 2561520 2561555 chr3L 2561606 2561626 9 87 2.5 4.5 3.5 2.0 106 chr3L 2561520 intron msn - chr3L 2561573 intron msn - chr3L 2561626 intron msn - chr3L_9_2560001 chr3L_2560001 RAL-439 929 chr3L 2581905 2581915 chr3L 2582008 2582024 4 110 0.0 7.5 3.8 0.8 119 chr3L 2581905 intron msn - chr3L 2581964 intron msn - chr3L 2582024 intron msn - chr3L_4_2580001 chr3L_2580001 RAL-439 930 chr3L 2624375 2624391 chr3L 2624537 2624553 5 161 9.0 5.0 7.0 0.6 178 chr3L 2624375 intron Pxn - chr3L 2624464 intron Pxn - chr3L 2624553 intron Pxn - chr3L_5_2620001 chr3L_2620001 RAL-439 931 chr3L 2624394 2624417 chr3L 2624531 2624579 11 145 3.5 4.5 4.0 2.2 185 chr3L 2624394 intron Pxn - chr3L 2624486 intron Pxn - chr3L 2624579 intron Pxn - chr3L_11_2620001 chr3L_2620001 RAL-439 932 chr3L 2683930 2683942 chr3L 2684026 2684038 4 95 14.0 2.0 8.0 0.4 108 chr3L 2683930 intron Fife - chr3L 2683984 intron Fife - chr3L 2684038 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-439 933 chr3L 2683943 2683975 chr3L 2684025 2684065 14 91 6.0 2.0 4.0 2.8 122 chr3L 2683943 intron Fife - chr3L 2684004 intron Fife - chr3L 2684065 intron Fife - chr3L_14_2680001 chr3L_2680001 RAL-439 934 chr3L 2719521 2719558 chr3L 2719643 2719652 9 113 4.5 3.0 3.8 1.9 131 chr3L 2719521 3` UTR Mrtf - chr3L 2719586 3` UTR Mrtf - chr3L 2719652 3` UTR Mrtf - chr3L_9_2715001 chr3L_2715001 RAL-439 935 chr3L 2731502 2731526 chr3L 2731603 2731612 7 99 3.0 6.0 4.5 1.3 110 chr3L 2731502 intron Mrtf - chr3L 2731557 intron Mrtf - chr3L 2731612 intron Mrtf - chr3L_7_2730001 chr3L_2730001 RAL-439 936 chr3L 2731533 2731545 chr3L 2731599 2731647 5 91 2.5 4.5 3.5 1.1 114 chr3L 2731533 intron Mrtf - chr3L 2731590 intron Mrtf - chr3L 2731647 intron Mrtf - chr3L_5_2730001 chr3L_2730001 RAL-439 937 chr3L 2795708 2795743 chr3L 2795851 2795851 7 133 3.0 3.0 3.0 1.8 143 chr3L 2795708 intron CG43444 - chr3L 2795780 intron CG43444 - chr3L 2795851 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-439 938 chr3L 2835145 2835145 chr3L 17500202 17500202 4 14665057 4.0 5.0 4.5 0.7 14665057 chr3L 2835145 intron CG43444 - chr3L 10167674 intron dpr10 - chr3L 17500202 intron Oatp74D + chr3L_4_10165001 chr3L_10165001 RAL-439 939 chr3L 2927865 2927871 chr3L 2936118 2936158 Tirant 4 8277 2.0 8.5 5.2 0.6 8293 chr3L 2927865 intron Shab + chr3L 2932012 intron Shab + chr3L 2936158 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-439 940 chr3L 2966702 2966719 chr3L 2974149 2974166 mdg1 4 7444 4.5 0.0 2.2 1.2 7464 chr3L 2966702 intergenic not near genes chr3L 2970434 intergenic not near genes chr3L 2974166 intergenic not near genes chr3L_4_2970001 chr3L_2970001 RAL-439 941 chr3L 2987696 2987728 chr3L 2987797 2987814 8 98 1.0 0.5 0.8 4.4 118 chr3L 2987696 intergenic not near genes chr3L 2987755 intergenic not near genes chr3L 2987814 intergenic not near genes chr3L_8_2985001 chr3L_2985001 RAL-439 942 chr3L 3040316 3040344 chr3L 3042125 3042138 S-element 6 1803 6.5 4.0 5.2 1.0 1822 chr3L 3040316 3` UTR CG2162 + chr3L 3041227 intergenic not near genes chr3L 3042138 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-439 943 chr3L 3051723 3051754 chr3L 3051985 3051994 pogo 13 257 8.5 2.0 5.2 2.1 271 chr3L 3051723 3` UTR CG32485 + chr3L 3051858 intergenic CG32485 + chr3L 3051994 intergenic CG32485 + chr3L_13_3050001 chr3L_3050001 RAL-439 944 chr3L 3057232 3057267 chr3L 3057396 3057431 6 164 1.0 2.5 1.8 2.1 199 chr3L 3057232 exon CG32486 - chr3L 3057332 intron CG32486 - chr3L 3057431 exon CG32486 - chr3L_6_3055001 chr3L_3055001 RAL-439 945 chr3L 3263708 3263737 chr3L 3263811 3263832 8 98 4.5 2.5 3.5 1.8 124 chr3L 3263708 intron ckd + chr3L 3263770 intron ckd + chr3L 3263832 intron ckd + chr3L_8_3260001 chr3L_3260001 RAL-439 946 chr3L 3317512 3317564 chr3L 3317611 3317638 19 96 1.5 4.5 3.0 4.8 126 chr3L 3317512 intergenic Drsl5 + chr3L 3317575 intergenic Drsl5 +,PIG-C - chr3L 3317638 intergenic PIG-C -,Drsl5 + chr3L_19_3315001 chr3L_3315001 RAL-439 947 chr3L 3341246 3341297 chr3L 3341346 3341394 18 97 1.5 5.5 3.5 4.0 148 chr3L 3341246 intron kst + chr3L 3341320 intron kst + chr3L 3341394 intron kst + chr3L_18_3340001 chr3L_3340001 RAL-439 948 chr3L 3436275 3436316 chr3L 3436369 3436375 15 95 4.0 2.5 3.2 3.6 100 chr3L 3436275 intron eIF5B - chr3L 3436325 intron eIF5B - chr3L 3436375 intron eIF5B - chr3L_15_3435001 chr3L_3435001 RAL-439 949 chr3L 3470138 3470183 chr3L 3470232 3470274 19 95 1.0 5.0 3.0 4.8 136 chr3L 3470138 intron CG14971 - chr3L 3470206 intron CG14971 - chr3L 3470274 intron CG14971 - chr3L_19_3470001 chr3L_3470001 RAL-439 950 chr3L 3475062 3475113 chr3L 3475523 3475542 jockey 9 455 1.5 0.5 1.0 4.5 480 chr3L 3475062 intron CG42324 + chr3L 3475302 intron CG42324 + chr3L 3475542 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-439 951 chr3L 3494176 3494194 chr3L 3494273 3494291 6 97 1.5 2.5 2.0 2.0 115 chr3L 3494176 intron CG42324 + chr3L 3494234 intron CG42324 + chr3L 3494291 intron CG42324 + chr3L_6_3490001 chr3L_3490001 RAL-439 952 chr3L 3573165 3573187 chr3L 3573251 3573274 5 95 4.5 5.5 5.0 0.8 109 chr3L 3573165 intron Eip63E + chr3L 3573220 intron Eip63E + chr3L 3573274 intron Eip63E + chr3L_5_3570001 chr3L_3570001 RAL-439 953 chr3L 3601281 3601324 chr3L 3606610 3606616 copia 7 5323 2.0 2.0 2.0 2.3 5335 chr3L 3601281 intron Eip63E + chr3L 3603948 intron Eip63E + chr3L 3606616 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-439 954 chr3L 3766717 3766748 chr3L 3766823 3766853 11 103 2.0 2.5 2.2 3.4 136 chr3L 3766717 intron CG32264 - chr3L 3766785 intron CG32264 - chr3L 3766853 intron CG32264 - chr3L_11_3765001 chr3L_3765001 RAL-439 955 chr3L 3772200 3772226 chr3L 3772303 3772326 8 95 6.5 2.0 4.2 1.5 126 chr3L 3772200 intron CG32264 - chr3L 3772263 intron CG32264 - chr3L 3772326 intron CG32264 - chr3L_8_3770001 chr3L_3770001 RAL-439 956 chr3L 3783262 3783287 chr3L 3783353 3783366 5 89 5.0 5.5 5.2 0.8 104 chr3L 3783262 intron CG32264 - chr3L 3783314 intron CG32264 - chr3L 3783366 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-439 957 chr3L 3797231 3797266 chr3L 3797324 3797369 16 100 2.0 3.5 2.8 4.2 138 chr3L 3797231 intron CG32264 - chr3L 3797300 intron CG32264 - chr3L 3797369 intron CG32264 - chr3L_16_3795001 chr3L_3795001 RAL-439 958 chr3L 3833718 3833756 chr3L 3833979 3834012 pogo 7 256 2.5 2.5 2.5 2.0 294 chr3L 3833718 intron enc + chr3L 3833865 intron enc + chr3L 3834012 intron enc + chr3L_7_3830001 chr3L_3830001 RAL-439 959 chr3L 3845541 3845570 chr3L 3845655 3845684 5 114 3.5 0.5 2.0 1.7 143 chr3L 3845541 intergenic not near genes chr3L 3845612 intergenic not near genes chr3L 3845684 intergenic not near genes chr3L_5_3845001 chr3L_3845001 RAL-439 960 chr3L 3890941 3890985 chr3L 3891042 3891086 13 99 6.5 0.5 3.5 2.9 145 chr3L 3890941 intergenic not near genes chr3L 3891014 intergenic not near genes chr3L 3891086 intergenic not near genes chr3L_13_3890001 chr3L_3890001 RAL-439 961 chr3L 3921403 3921423 chr3L 3921658 3921670 5 259 1.5 2.0 1.8 1.8 267 chr3L 3921403 intron Eip63F-1 - chr3L 3921536 intron Eip63F-1 - chr3L 3921670 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-439 962 chr3L 4015716 4015746 chr3L 4015818 4015844 4 102 4.5 6.0 5.2 0.6 128 chr3L 4015716 intergenic not near genes chr3L 4015780 intergenic not near genes chr3L 4015844 intergenic not near genes chr3L_4_4015001 chr3L_4015001 RAL-439 963 chr3L 4098385 4098412 chr3L 4098588 4098636 4 210 5.0 3.5 4.2 0.8 251 chr3L 4098385 intron CG14995 - chr3L 4098510 intron CG14995 - chr3L 4098636 intron CG14995 - chr3L_4_4095001 chr3L_4095001 RAL-439 964 chr3L 4099461 4099491 chr3L 4099562 4099592 9 98 4.0 5.5 4.8 1.6 131 chr3L 4099461 intron CG14995 - chr3L 4099526 intron CG14995 - chr3L 4099592 intron CG14995 - chr3L_9_4095001 chr3L_4095001 RAL-439 965 chr3L 4146801 4146808 chr3L 4146903 4146910 7 102 0.0 4.0 2.0 2.3 109 chr3L 4146801 intergenic not near genes chr3L 4146856 intergenic not near genes chr3L 4146910 intergenic not near genes chr3L_7_4145001 chr3L_4145001 RAL-439 966 chr3L 4146811 4146821 chr3L 4146900 4146923 6 100 0.0 3.5 1.8 2.1 112 chr3L 4146811 intergenic not near genes chr3L 4146867 intergenic not near genes chr3L 4146923 intergenic not near genes chr3L_6_4145001 chr3L_4145001 RAL-439 967 chr3L 4146822 4146840 chr3L 4146899 4146915 9 94 0.0 3.0 1.5 3.6 93 chr3L 4146822 intergenic not near genes chr3L 4146868 intergenic not near genes chr3L 4146915 intergenic not near genes chr3L_9_4145001 chr3L_4145001 RAL-439 968 chr3L 4328734 4328765 chr3L 4336250 4336257 412 12 7509 5.0 4.0 4.5 2.2 7523 chr3L 4328734 intron Cip4 - chr3L 4332496 intron Cip4 - chr3L 4336257 intron Cip4 - chr3L_12_4330001 chr3L_4330001 RAL-439 969 chr3L 4337574 4337591 chr3L 4337698 4337720 5 125 1.0 7.0 4.0 1.0 146 chr3L 4337574 intron Cip4 - chr3L 4337647 intron Cip4 - chr3L 4337720 intron Cip4 - chr3L_5_4335001 chr3L_4335001 RAL-439 970 chr3L 4341330 4341335 chr3L 21448026 21448026 4 17106694 13.0 12.5 12.8 0.3 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-439 971 chr3L 4344868 4344886 chr3L 4344995 4345013 7 125 8.0 0.0 4.0 1.4 145 chr3L 4344868 intron Cip4 - chr3L 4344940 intron Cip4 - chr3L 4345013 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-439 972 chr3L 4364210 4364231 chr3L 4364319 4364340 9 107 2.5 10.0 6.2 1.2 130 chr3L 4364210 intergenic Cip4 -,mRpS6 + chr3L 4364275 intergenic Cip4 -,mRpS6 + chr3L 4364340 intergenic mRpS6 +,Cip4 - chr3L_9_4360001 chr3L_4360001 RAL-439 973 chr3L 4441817 4441864 chr3L 4441914 4441933 7 81 3.0 1.5 2.2 2.2 116 chr3L 4441817 intergenic not near genes chr3L 4441875 intergenic not near genes chr3L 4441933 intergenic not near genes chr3L_7_4440001 chr3L_4440001 RAL-439 974 chr3L 4607248 4607292 chr3L 4607359 4607403 8 104 1.0 6.5 3.8 1.7 155 chr3L 4607248 intron Src64B - chr3L 4607326 intron Src64B - chr3L 4607403 intron Src64B - chr3L_8_4605001 chr3L_4605001 RAL-439 975 chr3L 4676016 4676054 chr3L 4676117 4676155 6 96 1.5 2.5 2.0 2.0 139 chr3L 4676016 intron axo - chr3L 4676086 intron axo - chr3L 4676155 intron axo - chr3L_6_4675001 chr3L_4675001 RAL-439 976 chr3L 4836938 4836985 chr3L 4837050 4837091 7 102 6.0 1.5 3.8 1.5 153 chr3L 4836938 intergenic not near genes chr3L 4837014 intergenic not near genes chr3L 4837091 intergenic not near genes chr3L_7_4835001 chr3L_4835001 RAL-439 977 chr3L 4839578 4839626 chr3L 4839679 4839727 11 94 2.5 1.0 1.8 3.9 149 chr3L 4839578 intron CG13707 - chr3L 4839652 intron CG13707 - chr3L 4839727 intron CG13707 - chr3L_11_4835001 chr3L_4835001 RAL-439 978 chr3L 4901108 4901153 chr3L 4907318 4907363 diver 9 6207 3.5 2.5 3.0 2.2 6255 chr3L 4901108 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907363 intergenic not near genes chr3L_9_4900001 chr3L_4900001 RAL-439 979 chr3L 4959630 4959671 chr3L 4960080 4960123 4 449 0.0 1.0 0.5 2.7 493 chr3L 4959630 intron Con - chr3L 4959876 intron Con - chr3L 4960123 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-439 980 chr3L 5045440 5045459 chr3L 5050236 5050260 Doc 5 4800 7.0 2.5 4.8 0.9 4820 chr3L 5045440 intron Con - chr3L 5047850 intron Con - chr3L 5050260 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-439 981 chr3L 5045461 5045484 chr3L 5050234 5050273 Doc 14 4784 5.5 2.5 4.0 2.8 4812 chr3L 5045461 intron Con - chr3L 5047867 intron Con - chr3L 5050273 intron Con - chr3L_14_5045001 chr3L_5045001 RAL-439 982 chr3L 5066287 5066323 chr3L 5066404 5066407 6 113 4.5 4.0 4.2 1.2 120 chr3L 5066287 intron Con - chr3L 5066347 intron Con - chr3L 5066407 intron Con - chr3L_6_5065001 chr3L_5065001 RAL-439 983 chr3L 5219800 5219824 chr3L 5220110 5220128 6 315 4.5 0.5 2.5 1.7 328 chr3L 5219800 intron shep - chr3L 5219964 intron shep - chr3L 5220128 intron shep - chr3L_6_5215001 chr3L_5215001 RAL-439 984 chr3L 5261146 5261175 chr3L 5261245 5261274 8 96 7.5 3.0 5.2 1.3 128 chr3L 5261146 intron shep - chr3L 5261210 intron shep - chr3L 5261274 intron shep - chr3L_8_5260001 chr3L_5260001 RAL-439 985 chr3L 5271167 5271195 chr3L 5271245 5271270 4 85 0.0 0.0 0.0 4.0 103 chr3L 5271167 intron shep - chr3L 5271218 intron shep - chr3L 5271270 intron shep - chr3L_4_5270001 chr3L_5270001 RAL-439 986 chr3L 5292270 5292280 chr3L 5292355 5292386 5 93 5.0 1.0 3.0 1.2 116 chr3L 5292270 intergenic not near genes chr3L 5292328 intergenic not near genes chr3L 5292386 intergenic not near genes chr3L_5_5290001 chr3L_5290001 RAL-439 987 chr3L 5306657 5306663 chr3L 5306767 5306773 4 108 0.5 2.0 1.2 1.8 116 chr3L 5306657 intergenic not near genes chr3L 5306715 intergenic not near genes chr3L 5306773 intergenic not near genes chr3L_4_5305001 chr3L_5305001 RAL-439 988 chr3L 5327450 5327473 chr3L 5327550 5327578 8 104 4.0 4.0 4.0 1.6 128 chr3L 5327450 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327578 intergenic not near genes chr3L_8_5325001 chr3L_5325001 RAL-439 989 chr3L 5351095 5351125 chr3L 5351200 5351215 13 104 7.5 2.5 5.0 2.2 120 chr3L 5351095 intron lama - chr3L 5351155 intron lama - chr3L 5351215 intron lama - chr3L_13_5350001 chr3L_5350001 RAL-439 990 chr3L 5428660 5428688 chr3L 5428756 5428789 7 99 3.0 0.5 1.8 2.5 129 chr3L 5428660 intron CG34391 + chr3L 5428724 intron CG34391 + chr3L 5428789 intron CG34391 + chr3L_7_5425001 chr3L_5425001 RAL-439 991 chr3L 5493786 5493824 chr3L 5493877 5493899 4 90 5.0 0.0 2.5 1.1 113 chr3L 5493786 3` UTR CR44520 - chr3L 5493842 3` UTR CR44520 - chr3L 5493899 3` UTR CR44520 - chr3L_4_5490001 chr3L_5490001 RAL-439 992 chr3L 5537702 5537755 chr3L 5538061 5538099 jockey 8 351 4.5 5.0 4.8 1.4 397 chr3L 5537702 intergenic not near genes chr3L 5537900 intergenic not near genes chr3L 5538099 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-439 993 chr3L 5633209 5633211 chr3L 6155966 6155968 6 522757 11.0 12.5 11.8 0.5 522759 chr3L 5633209 intron Blimp-1 + chr3L 5894588 intergenic not near genes chr3L 6155968 intergenic not near genes chr3L_6_5890001 chr3L_5890001 RAL-439 994 chr3L 5910012 5910063 chr3L 5910273 5910294 pogo 15 251 4.5 5.5 5.0 2.5 282 chr3L 5910012 intron CG13288 + chr3L 5910153 intron CG13288 + chr3L 5910294 intron CG13288 + chr3L_15_5910001 chr3L_5910001 RAL-439 995 chr3L 6001691 6001715 chr3L 6004389 6004435 jockey 8 2712 5.0 1.5 3.2 1.9 2744 chr3L 6001691 intron PVRAP + chr3L 6003063 intron PVRAP + chr3L 6004435 intron PVRAP + chr3L_8_6000001 chr3L_6000001 RAL-439 996 chr3L 6052142 6052149 chr3L 6052234 6052234 5 96 0.0 4.5 2.2 1.6 92 chr3L 6052142 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052234 intergenic Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-439 997 chr3L 6102939 6102963 chr3L 6103036 6103066 14 101 4.5 0.5 2.5 4.0 127 chr3L 6102939 intron Ets65A + chr3L 6103002 intron Ets65A + chr3L 6103066 intron Ets65A + chr3L_14_6100001 chr3L_6100001 RAL-439 998 chr3L 6119141 6119156 chr3L 6119250 6119255 7 108 1.5 6.5 4.0 1.4 114 chr3L 6119141 exon Ets65A + chr3L 6119198 intron Ets65A + chr3L 6119255 intron Ets65A + chr3L_7_6115001 chr3L_6115001 RAL-439 999 chr3L 6155676 6155698 chr3L 6155782 6155798 6 105 4.5 8.5 6.5 0.8 122 chr3L 6155676 intergenic CR45421 - chr3L 6155737 intergenic not near genes chr3L 6155798 intergenic not near genes chr3L_6_6155001 chr3L_6155001 RAL-439 1000 chr3L 6159920 6159974 chr3L 6160020 6160083 8 90 5.0 0.0 2.5 2.3 163 chr3L 6159920 intergenic not near genes chr3L 6160002 intergenic not near genes chr3L 6160083 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-439 1001 chr3L 6220903 6220943 chr3L 6230069 6230115 roo 11 9165 6.5 4.5 5.5 1.7 9212 chr3L 6220903 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230115 intergenic not near genes chr3L_11_6225001 chr3L_6225001 RAL-439 1002 chr3L 6266367 6266400 chr3L 6266456 6266473 5 89 0.5 0.0 0.2 4.2 106 chr3L 6266367 intergenic not near genes chr3L 6266420 intergenic not near genes chr3L 6266473 intergenic not near genes chr3L_5_6265001 chr3L_6265001 RAL-439 1003 chr3L 6267295 6267341 chr3L 6267403 6267449 14 104 1.5 5.5 3.5 3.1 154 chr3L 6267295 intergenic not near genes chr3L 6267372 intergenic not near genes chr3L 6267449 intergenic not near genes chr3L_14_6265001 chr3L_6265001 RAL-439 1004 chr3L 6334992 6335040 chr3L 6335481 6335531 297 4 481 1.0 5.5 3.2 1.0 539 chr3L 6334992 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335531 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-439 1005 chr3L 6362370 6362410 chr3L 6362462 6362507 11 95 5.0 3.0 4.0 2.2 137 chr3L 6362370 intergenic not near genes chr3L 6362438 intergenic not near genes chr3L 6362507 intergenic not near genes chr3L_11_6360001 chr3L_6360001 RAL-439 1006 chr3L 6405645 6405659 chr3L 6432129 6432142 roo 8 26484 7.0 7.0 7.0 1.0 26497 chr3L 6405645 intron CG42747 + chr3L 6418894 intron CG42747 + chr3L 6432142 intron CG42747 + chr3L_8_6415001 chr3L_6415001 RAL-439 1007 chr3L 6405660 6405681 chr3L 6432128 6432165 roo 8 26478 6.5 7.0 6.8 1.0 26505 chr3L 6405660 intron CG42747 + chr3L 6418912 intron CG42747 + chr3L 6432165 intron CG42747 + chr3L_8_6415001 chr3L_6415001 RAL-439 1008 chr3L 6442148 6442202 chr3L 6442342 6442396 11 196 33.0 26.0 29.5 0.4 248 chr3L 6442148 intron CG42747 + chr3L 6442272 intron CG42747 + chr3L 6442396 intron CG42747 + chr3L_11_6440001 chr3L_6440001 RAL-439 1009 chr3L 6535000 6535032 chr3L 6535152 6535200 8 161 2.5 1.5 2.0 2.7 200 chr3L 6535000 intron sfl + chr3L 6535100 intron sfl + chr3L 6535200 intron sfl + chr3L_8_6535001 chr3L_6535001 RAL-439 1010 chr3L 6585822 6585844 chr3L 6586131 6586184 4 324 0.5 1.5 1.0 2.0 362 chr3L 6585822 intron,intron CG18769 +,jv - chr3L 6586003 intron,intron CG18769 +,jv - chr3L 6586184 intron,intron CG18769 +,jv - chr3L_4_6585001 chr3L_6585001 RAL-439 1011 chr3L 6620598 6620604 chr3L 6621057 6621064 Rt1c 4 460 7.5 10.0 8.8 0.4 466 chr3L 6620598 intergenic not near genes chr3L 6620831 intergenic not near genes chr3L 6621064 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-439 1012 chr3L 6705620 6705647 chr3L 6706052 6706079 14 427 10.5 9.0 9.8 1.3 459 chr3L 6705620 intron CG8519 + chr3L 6705850 intron CG8519 + chr3L 6706079 intron CG8519 + chr3L_14_6705001 chr3L_6705001 RAL-439 1013 chr3L 6705602 6705646 chr3L 6705967 6705999 12 361 10.5 8.5 9.5 1.1 397 chr3L 6705602 intron CG8519 + chr3L 6705800 intron CG8519 + chr3L 6705999 intron CG8519 + chr3L_12_6705001 chr3L_6705001 RAL-439 1014 chr3L 6795356 6795384 chr3L 6795675 6795713 9 322 6.0 3.5 4.8 1.6 357 chr3L 6795356 intergenic vvl + chr3L 6795534 intergenic not near genes chr3L 6795713 intergenic not near genes chr3L_9_6795001 chr3L_6795001 RAL-439 1015 chr3L 6868698 6868743 chr3L 6868796 6868841 18 96 2.0 2.0 2.0 6.0 143 chr3L 6868698 intergenic not near genes chr3L 6868770 intergenic not near genes chr3L 6868841 intergenic not near genes chr3L_18_6865001 chr3L_6865001 RAL-439 1016 chr3L 6887499 6887540 chr3L 6895011 6895032 roo 11 7500 6.5 7.5 7.0 1.4 7533 chr3L 6887499 intergenic not near genes chr3L 6891266 intergenic not near genes chr3L 6895032 intergenic not near genes chr3L_11_6890001 chr3L_6890001 RAL-439 1017 chr3L 6989273 6989324 chr3L 6989371 6989382 11 91 6.5 2.5 4.5 2.0 109 chr3L 6989273 intergenic not near genes chr3L 6989328 intergenic not near genes chr3L 6989382 intergenic not near genes chr3L_11_6985001 chr3L_6985001 RAL-439 1018 chr3L 6994890 6994901 chr3L 6995506 6995532 BS 7 626 0.0 10.5 5.2 1.1 642 chr3L 6994890 intergenic bin + chr3L 6995211 intergenic not near genes chr3L 6995532 intergenic not near genes chr3L_7_6995001 chr3L_6995001 RAL-439 1019 chr3L 6994902 6994914 chr3L 6995498 6995498 BS 5 606 0.0 9.0 4.5 0.9 596 chr3L 6994902 intergenic bin + chr3L 6995200 intergenic not near genes chr3L 6995498 intergenic not near genes chr3L_5_6995001 chr3L_6995001 RAL-439 1020 chr3L 7013439 7013474 chr3L 7013547 7013597 7 118 4.0 0.0 2.0 2.3 158 chr3L 7013439 intron Mp + chr3L 7013518 intron Mp + chr3L 7013597 intron Mp + chr3L_7_7010001 chr3L_7010001 RAL-439 1021 chr3L 7022020 7022051 chr3L 7022248 7022278 4 226 0.0 5.0 2.5 1.1 258 chr3L 7022020 intron Mp + chr3L 7022149 intron Mp + chr3L 7022278 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-439 1022 chr3L 7033033 7033081 chr3L 7033151 7033154 4 96 2.5 1.5 2.0 1.3 121 chr3L 7033033 intron Mp + chr3L 7033094 intron Mp + chr3L 7033154 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-439 1023 chr3L 7090880 7090919 chr3L 7090983 7091023 8 101 1.5 5.5 3.5 1.8 143 chr3L 7090880 intergenic not near genes chr3L 7090952 intergenic not near genes chr3L 7091023 intergenic not near genes chr3L_8_7090001 chr3L_7090001 RAL-439 1024 chr3L 7175020 7175058 chr3L 7175270 7175294 11 240 2.5 2.5 2.5 3.1 274 chr3L 7175020 intron Dscam2 - chr3L 7175157 intron Dscam2 - chr3L 7175294 intron Dscam2 - chr3L_11_7175001 chr3L_7175001 RAL-439 1025 chr3L 7318204 7318211 chr3L 7318280 7318281 4 92 3.5 0.0 1.8 1.4 77 chr3L 7318204 intergenic not near genes chr3L 7318242 intergenic not near genes chr3L 7318281 intergenic not near genes chr3L_4_7315001 chr3L_7315001 RAL-439 1026 chr3L 7329002 7329027 chr3L 7329104 7329129 5 100 0.5 1.0 0.8 2.8 127 chr3L 7329002 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329066 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329129 intergenic CG42307 +,mus312 +,CG8602 - chr3L_5_7325001 chr3L_7325001 RAL-439 1027 chr3L 7377300 7377344 chr3L 7380425 7380460 297 11 3121 6.5 2.0 4.2 2.1 3160 chr3L 7377300 intron SMSr - chr3L 7378880 intron SMSr - chr3L 7380460 intron SMSr - chr3L_11_7375001 chr3L_7375001 RAL-439 1028 chr3L 7426004 7426041 chr3L 7426406 7426443 16 398 2.5 4.0 3.2 3.8 439 chr3L 7426004 intron CG42458 + chr3L 7426224 intron CG42458 + chr3L 7426443 intron CG42458 + chr3L_16_7425001 chr3L_7425001 RAL-439 1029 chr3L 7460362 7460391 chr3L 7460465 7460495 10 102 4.0 9.0 6.5 1.3 133 chr3L 7460362 intergenic not near genes chr3L 7460428 intergenic not near genes chr3L 7460495 intergenic not near genes chr3L_10_7460001 chr3L_7460001 RAL-439 1030 chr3L 7462975 7462990 chr3L 7463043 7463079 6 92 1.5 4.5 3.0 1.5 104 chr3L 7462975 intergenic not near genes chr3L 7463027 intergenic not near genes chr3L 7463079 intergenic not near genes chr3L_6_7460001 chr3L_7460001 RAL-439 1031 chr3L 7498744 7498771 chr3L 7503541 7503568 F-element 4 4796 10.5 4.5 7.5 0.5 4824 chr3L 7498744 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503568 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-439 1032 chr3L 7498774 7498785 chr3L 7503533 7503581 F-element 7 4785 7.5 3.5 5.5 1.1 4807 chr3L 7498774 5` UTR CG8539 - chr3L 7501178 intergenic not near genes chr3L 7503581 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-439 1033 chr3L 7505417 7505430 chr3L 7505508 7505521 4 93 2.0 10.0 6.0 0.6 104 chr3L 7505417 intergenic CG7548 - chr3L 7505469 intergenic CG7548 - chr3L 7505521 intergenic CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-439 1034 chr3L 7524129 7524169 chr3L 7524246 7524286 9 114 6.0 4.5 5.2 1.5 157 chr3L 7524129 intron ltl + chr3L 7524208 intron ltl + chr3L 7524286 intron ltl + chr3L_9_7520001 chr3L_7520001 RAL-439 1035 chr3L 7708821 7708866 chr3L 7708942 7708987 9 116 1.5 4.5 3.0 2.2 166 chr3L 7708821 intron,intron CG32373 +,Ank2 - chr3L 7708904 intron,intron CG32373 +,Ank2 - chr3L 7708987 intron,intron CG32373 +,Ank2 - chr3L_9_7705001 chr3L_7705001 RAL-439 1036 chr3L 7793695 7793738 chr3L 7800767 7800795 297 12 7066 7.0 8.0 7.5 1.4 7100 chr3L 7793695 intron CG32369 - chr3L 7797245 intron CG32369 - chr3L 7800795 intron CG32369 - chr3L_12_7795001 chr3L_7795001 RAL-439 1037 chr3L 7867795 7867801 chr3L 7867893 7867899 4 97 4.5 9.5 7.0 0.5 104 chr3L 7867795 intergenic Pdp1 - chr3L 7867847 intergenic Pdp1 - chr3L 7867899 intergenic not near genes chr3L_4_7865001 chr3L_7865001 RAL-439 1038 chr3L 7876090 7876112 chr3L 7876189 7876211 6 97 0.5 1.5 1.0 3.0 121 chr3L 7876090 intron CG32365 + chr3L 7876150 intron CG32365 + chr3L 7876211 intron CG32365 + chr3L_6_7875001 chr3L_7875001 RAL-439 1039 chr3L 7876114 7876130 chr3L 7876188 7876209 7 93 0.0 1.0 0.5 4.7 95 chr3L 7876114 intron CG32365 + chr3L 7876162 intron CG32365 + chr3L 7876209 intron CG32365 + chr3L_7_7875001 chr3L_7875001 RAL-439 1040 chr3L 7883731 7883780 chr3L 7883901 7883909 8 160 1.5 0.5 1.0 4.0 178 chr3L 7883731 intron CG32365 + chr3L 7883820 intron CG32365 + chr3L 7883909 intron CG32365 + chr3L_8_7880001 chr3L_7880001 RAL-439 1041 chr3L 7886501 7886547 chr3L 7889029 7889049 Stalker4 11 2529 2.5 1.5 2.0 3.7 2548 chr3L 7886501 intron CG32365 + chr3L 7887775 intron CG32365 + chr3L 7889049 intron CG32365 + chr3L_11_7885001 chr3L_7885001 RAL-439 1042 chr3L 7916815 7916861 chr3L 7926006 7926051 roo 10 9190 6.0 6.5 6.2 1.4 9236 chr3L 7916815 3` UTR syd - chr3L 7921433 intron syd - chr3L 7926051 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-439 1043 chr3L 7985356 7985390 chr3L 7987702 7987726 NOF 8 2342 2.5 6.5 4.5 1.5 2370 chr3L 7985356 intron nmo + chr3L 7986541 intron nmo + chr3L 7987726 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-439 1044 chr3L 8149746 8149754 chr3L 8149872 8149880 7 125 9.0 6.5 7.8 0.8 134 chr3L 8149746 intron CG13676 - chr3L 8149813 intron CG13676 - chr3L 8149880 intron CG13676 - chr3L_7_8145001 chr3L_8145001 RAL-439 1045 chr3L 8160025 8160029 chr3L 8160097 8160137 5 96 2.5 5.0 3.8 1.0 112 chr3L 8160025 intergenic CG43886 -,CG13675 - chr3L 8160081 intergenic CG13675 -,CG43886 - chr3L 8160137 intergenic CG13675 -,CG43886 - chr3L_5_8160001 chr3L_8160001 RAL-439 1046 chr3L 8178513 8178532 chr3L 8178600 8178609 7 90 1.5 0.0 0.8 3.9 96 chr3L 8178513 intergenic Nmt -,mthl7 - chr3L 8178561 intergenic mthl7 -,Nmt - chr3L 8178609 intergenic mthl7 -,Nmt - chr3L_7_8175001 chr3L_8175001 RAL-439 1047 chr3L 8219552 8219569 chr3L 8219845 8219864 6 303 5.0 1.5 3.2 1.4 312 chr3L 8219552 intergenic not near genes chr3L 8219708 intergenic not near genes chr3L 8219864 intergenic not near genes chr3L_6_8215001 chr3L_8215001 RAL-439 1048 chr3L 8248298 8248343 chr3L 8248407 8248451 4 106 1.0 2.5 1.8 1.4 153 chr3L 8248298 intron Dscam4 + chr3L 8248374 intron Dscam4 + chr3L 8248451 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-439 1049 chr3L 8295773 8295825 chr3L 8295950 8295988 15 173 6.0 4.0 5.0 2.5 215 chr3L 8295773 intergenic CG7201 - chr3L 8295880 intergenic not near genes chr3L 8295988 intergenic not near genes chr3L_15_8295001 chr3L_8295001 RAL-439 1050 chr3L 8413818 8413871 chr3L 8413917 8413970 8 97 9.0 3.0 6.0 1.1 152 chr3L 8413818 intron,3` UTR Exo70 +,mtrm + chr3L 8413894 intron,3` UTR Exo70 +,mtrm + chr3L 8413970 intron,3` UTR Exo70 +,mtrm + chr3L_8_8410001 chr3L_8410001 RAL-439 1051 chr3L 8442917 8442945 chr3L 8443003 8443041 8 95 1.0 4.0 2.5 2.3 124 chr3L 8442917 intergenic CG6983 - chr3L 8442979 intergenic CG6983 - chr3L 8443041 3` UTR CG6983 - chr3L_8_8440001 chr3L_8440001 RAL-439 1052 chr3L 8498297 8498307 chr3L 8505774 8505789 blood 4 7483 0.5 9.0 4.8 0.7 7492 chr3L 8498297 intron CG43163 - chr3L 8502043 intron CG43163 - chr3L 8505789 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-439 1053 chr3L 8521864 8521908 chr3L 8522055 8522064 9 177 2.5 3.0 2.8 2.4 200 chr3L 8521864 exon GstO2 - chr3L 8521964 exon GstO2 - chr3L 8522064 exon GstO2 - chr3L_9_8520001 chr3L_8520001 RAL-439 1054 chr3L 8551757 8551772 chr3L 8551827 8551870 7 86 5.0 3.5 4.2 1.3 113 chr3L 8551757 intron rhea + chr3L 8551814 intron rhea + chr3L 8551870 intron rhea + chr3L_7_8550001 chr3L_8550001 RAL-439 1055 chr3L 8578134 8578138 chr3L 8578239 8578253 4 112 2.0 6.0 4.0 0.8 119 chr3L 8578134 5` UTR CG43078 + chr3L 8578194 5` UTR CG43078 + chr3L 8578253 5` UTR CG43078 + chr3L_4_8575001 chr3L_8575001 RAL-439 1056 chr3L 8580807 8580836 chr3L 8580910 8580916 4 95 2.0 2.5 2.2 1.2 109 chr3L 8580807 intron CG43078 + chr3L 8580862 intron CG43078 + chr3L 8580916 intron CG43078 + chr3L_4_8580001 chr3L_8580001 RAL-439 1057 chr3L 8582721 8582774 chr3L 8583093 8583140 7 362 1.5 2.0 1.8 2.5 419 chr3L 8582721 intron CG43078 + chr3L 8582930 intron CG43078 + chr3L 8583140 intron CG43078 + chr3L_7_8580001 chr3L_8580001 RAL-439 1058 chr3L 8649224 8649258 chr3L 8649459 8649488 9 225 2.5 7.0 4.8 1.6 264 chr3L 8649224 intron Pex7 + chr3L 8649356 intron Pex7 + chr3L 8649488 intron Pex7 + chr3L_9_8645001 chr3L_8645001 RAL-439 1059 chr3L 8699519 8699552 chr3L 8699828 8699859 5 306 4.0 1.0 2.5 1.4 340 chr3L 8699519 intergenic not near genes chr3L 8699689 intergenic not near genes chr3L 8699859 intergenic not near genes chr3L_5_8695001 chr3L_8695001 RAL-439 1060 chr3L 8761885 8761925 chr3L 8762045 8762079 8 149 2.5 0.5 1.5 3.2 194 chr3L 8761885 exon Fhos + chr3L 8761982 exon Fhos + chr3L 8762079 exon Fhos + chr3L_8_8760001 chr3L_8760001 RAL-439 1061 chr3L 8784838 8784860 chr3L 8784941 8784963 4 103 2.0 2.5 2.2 1.2 125 chr3L 8784838 intron Fhos + chr3L 8784900 intron Fhos + chr3L 8784963 intron Fhos + chr3L_4_8780001 chr3L_8780001 RAL-439 1062 chr3L 8839721 8839744 chr3L 8839818 8839826 10 96 4.5 0.5 2.5 2.9 105 chr3L 8839721 intron dally + chr3L 8839774 intron dally + chr3L 8839826 intron dally + chr3L_10_8835001 chr3L_8835001 RAL-439 1063 chr3L 8846184 8846206 chr3L 8846285 8846285 11 98 0.5 1.5 1.0 5.5 101 chr3L 8846184 intron dally + chr3L 8846234 intron dally + chr3L 8846285 intron dally + chr3L_11_8845001 chr3L_8845001 RAL-439 1064 chr3L 9030408 9030415 chr3L 9030507 9030514 5 99 8.0 0.0 4.0 1.0 106 chr3L 9030408 intergenic not near genes chr3L 9030461 intergenic not near genes chr3L 9030514 intergenic not near genes chr3L_5_9030001 chr3L_9030001 RAL-439 1065 chr3L 9030422 9030448 chr3L 9030506 9030515 7 88 5.5 0.0 2.8 1.8 93 chr3L 9030422 intergenic not near genes chr3L 9030468 intergenic not near genes chr3L 9030515 intergenic not near genes chr3L_7_9030001 chr3L_9030001 RAL-439 1066 chr3L 9047075 9047091 chr3L 9047182 9047186 4 104 3.0 0.0 1.5 1.6 111 chr3L 9047075 intergenic CG5144 + chr3L 9047130 intergenic CG5144 + chr3L 9047186 intergenic CG5144 + chr3L_4_9045001 chr3L_9045001 RAL-439 1067 chr3L 9096218 9096230 chr3L 9096305 9096313 4 86 3.5 0.5 2.0 1.3 95 chr3L 9096218 intergenic not near genes chr3L 9096266 intergenic not near genes chr3L 9096313 intergenic not near genes chr3L_4_9095001 chr3L_9095001 RAL-439 1068 chr3L 9116172 9116223 chr3L 9116271 9116315 18 100 7.5 6.5 7.0 2.2 143 chr3L 9116172 intron bol - chr3L 9116244 intron bol - chr3L 9116315 intron bol - chr3L_18_9115001 chr3L_9115001 RAL-439 1069 chr3L 9128195 9128220 chr3L 9128284 9128324 8 96 5.0 8.0 6.5 1.1 129 chr3L 9128195 intron bol - chr3L 9128260 intron bol - chr3L 9128324 intron bol - chr3L_8_9125001 chr3L_9125001 RAL-439 1070 chr3L 9164700 9164719 chr3L 9166161 9166185 hobo 9 1470 2.5 2.0 2.2 2.8 1485 chr3L 9164700 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166185 intron Rdl - chr3L_9_9165001 chr3L_9165001 RAL-439 1071 chr3L 9219252 9219266 chr3L 9219919 9219927 jockey 4 665 3.5 3.0 3.2 1.0 675 chr3L 9219252 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-439 1072 chr3L 9237476 9237518 chr3L 9237575 9237582 5 92 6.5 0.5 3.5 1.1 106 chr3L 9237476 intergenic not near genes chr3L 9237529 intergenic not near genes chr3L 9237582 intergenic not near genes chr3L_5_9235001 chr3L_9235001 RAL-439 1073 chr3L 9321017 9321059 chr3L 9321110 9321156 7 96 2.0 2.0 2.0 2.3 139 chr3L 9321017 intergenic not near genes chr3L 9321086 intergenic not near genes chr3L 9321156 intergenic not near genes chr3L_7_9320001 chr3L_9320001 RAL-439 1074 chr3L 9390839 9390870 chr3L 9390983 9391009 10 146 4.5 6.5 5.5 1.5 170 chr3L 9390839 intron CG4080 - chr3L 9390924 intron CG4080 - chr3L 9391009 intron CG4080 - chr3L_10_9390001 chr3L_9390001 RAL-439 1075 chr3L 9443504 9443533 chr3L 9445300 9445304 S-element 11 1801 5.0 4.5 4.8 1.9 1800 chr3L 9443504 intron CG33926 + chr3L 9444404 intron CG33926 + chr3L 9445304 intron CG33926 + chr3L_11_9440001 chr3L_9440001 RAL-439 1076 chr3L 9501682 9501725 chr3L 9502188 9502229 roo 13 504 3.0 8.0 5.5 2.0 547 chr3L 9501682 intron path - chr3L 9501956 intron path - chr3L 9502229 intron path - chr3L_13_9500001 chr3L_9500001 RAL-439 1077 chr3L 9502595 9502643 chr3L 9502695 9502743 21 92 3.0 4.0 3.5 4.7 148 chr3L 9502595 intron path - chr3L 9502669 intron path - chr3L 9502743 intron path - chr3L_21_9500001 chr3L_9500001 RAL-439 1078 chr3L 9600326 9600369 chr3L 9600445 9600487 6 116 6.0 0.0 3.0 1.5 161 chr3L 9600326 3` UTR CG3222 + chr3L 9600406 intergenic CG3222 +,CG3088 - chr3L 9600487 intergenic CG3088 -,CG3222 + chr3L_6_9600001 chr3L_9600001 RAL-439 1079 chr3L 9604235 9604241 chr3L 9604349 9604350 5 113 0.0 1.5 0.8 2.8 115 chr3L 9604235 intron CG3280 + chr3L 9604292 intron CG3280 + chr3L 9604350 intron CG3280 + chr3L_5_9600001 chr3L_9600001 RAL-439 1080 chr3L 9613877 9613925 chr3L 9613983 9613987 16 96 2.5 2.0 2.2 5.0 110 chr3L 9613877 3` UTR CG3280 + chr3L 9613932 intergenic CG3280 + chr3L 9613987 intergenic CG3280 + chr3L_16_9610001 chr3L_9610001 RAL-439 1081 chr3L 9637834 9637885 chr3L 9637936 9637977 9 100 3.0 2.5 2.8 2.4 143 chr3L 9637834 intron fry - chr3L 9637906 intron fry - chr3L 9637977 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-439 1082 chr3L 9639008 9639055 chr3L 9639113 9639160 7 96 0.0 6.5 3.2 1.7 152 chr3L 9639008 intron,3` UTR fry -,CG8329 + chr3L 9639084 intron fry - chr3L 9639160 intron fry - chr3L_7_9635001 chr3L_9635001 RAL-439 1083 chr3L 9741605 9741651 chr3L 9741717 9741758 14 109 2.0 2.0 2.0 4.7 153 chr3L 9741605 intron,intron CG42268 -,CR44348 + chr3L 9741682 intron,intron CG42268 -,CR44348 + chr3L 9741758 intron,intron CG42268 -,CR44348 + chr3L_14_9740001 chr3L_9740001 RAL-439 1084 chr3L 9918874 9918912 chr3L 9918974 9919027 7 109 3.5 2.5 3.0 1.8 153 chr3L 9918874 intron CG34356 + chr3L 9918950 intron CG34356 + chr3L 9919027 intron CG34356 + chr3L_7_9915001 chr3L_9915001 RAL-439 1085 chr3L 9929679 9929692 chr3L 9938448 9938479 roo 4 8788 1.5 6.5 4.0 0.8 8800 chr3L 9929679 intron CG34356 + chr3L 9934079 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-439 1086 chr3L 9951187 9951218 chr3L 9951294 9951325 5 100 6.5 1.5 4.0 1.0 138 chr3L 9951187 intron CG34356 + chr3L 9951256 intron CG34356 + chr3L 9951325 intron CG34356 + chr3L_5_9950001 chr3L_9950001 RAL-439 1087 chr3L 9981527 9981556 chr3L 9981633 9981662 12 102 3.0 6.0 4.5 2.2 135 chr3L 9981527 intron dpr6 + chr3L 9981594 intron dpr6 + chr3L 9981662 intron dpr6 + chr3L_12_9980001 chr3L_9980001 RAL-439 1088 chr3L 9989088 9989141 chr3L 9989403 9989445 9 314 2.0 1.0 1.5 3.6 357 chr3L 9989088 intron dpr6 + chr3L 9989266 intron dpr6 + chr3L 9989445 intron dpr6 + chr3L_9_9985001 chr3L_9985001 RAL-439 1089 chr3L 10003140 10003171 chr3L 10003257 10003281 9 114 8.0 4.5 6.2 1.2 141 chr3L 10003140 intron dpr6 + chr3L 10003210 intron dpr6 + chr3L 10003281 intron dpr6 + chr3L_9_10000001 chr3L_10000001 RAL-439 1090 chr3L 10027949 10027980 chr3L 10028056 10028066 9 103 3.5 2.5 3.0 2.2 117 chr3L 10027949 intron dpr6 + chr3L 10028008 intron dpr6 + chr3L 10028066 intron dpr6 + chr3L_9_10025001 chr3L_10025001 RAL-439 1091 chr3L 10035209 10035239 chr3L 10035316 10035346 10 102 3.5 3.0 3.2 2.4 137 chr3L 10035209 intron dpr6 + chr3L 10035278 intron dpr6 + chr3L 10035346 intron dpr6 + chr3L_10_10035001 chr3L_10035001 RAL-439 1092 chr3L 10060094 10060117 chr3L 10067693 10067706 17.6 10 7596 4.0 2.5 3.2 2.4 7612 chr3L 10060094 intron dpr6 + chr3L 10063900 intron dpr6 + chr3L 10067706 intron dpr6 + chr3L_10_10060001 chr3L_10060001 RAL-439 1093 chr3L 10145047 10145064 chr3L 10145236 10145253 6 189 6.0 6.0 6.0 0.9 206 chr3L 10145047 intergenic not near genes chr3L 10145150 intergenic not near genes chr3L 10145253 intergenic not near genes chr3L_6_10145001 chr3L_10145001 RAL-439 1094 chr3L 10145070 10145085 chr3L 10145234 10145272 7 183 3.5 5.5 4.5 1.3 202 chr3L 10145070 intergenic not near genes chr3L 10145171 intergenic not near genes chr3L 10145272 intergenic not near genes chr3L_7_10145001 chr3L_10145001 RAL-439 1095 chr3L 10198605 10198657 chr3L 10198703 10198738 6 95 4.5 5.5 5.0 1.0 133 chr3L 10198605 intron ect - chr3L 10198672 intron ect - chr3L 10198738 intron ect - chr3L_6_10195001 chr3L_10195001 RAL-439 1096 chr3L 10214795 10214828 chr3L 10214917 10214951 9 121 5.5 2.5 4.0 1.8 156 chr3L 10214795 intergenic not near genes chr3L 10214873 intergenic not near genes chr3L 10214951 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-439 1097 chr3L 10298656 10298702 chr3L 10298757 10298764 19 101 1.0 2.0 1.5 7.6 108 chr3L 10298656 intergenic not near genes chr3L 10298710 intergenic not near genes chr3L 10298764 intergenic not near genes chr3L_19_10295001 chr3L_10295001 RAL-439 1098 chr3L 10328100 10328119 chr3L 10328232 10328251 8 129 8.0 5.0 6.5 1.1 151 chr3L 10328100 intergenic not near genes chr3L 10328176 intergenic not near genes chr3L 10328251 intergenic not near genes chr3L_8_10325001 chr3L_10325001 RAL-439 1099 chr3L 10362667 10362677 chr3L 10363049 10363059 6 381 1.0 2.5 1.8 2.1 392 chr3L 10362667 5` UTR CR44327 + chr3L 10362863 5` UTR CR44327 + chr3L 10363059 5` UTR CR44327 + chr3L_6_10360001 chr3L_10360001 RAL-439 1100 chr3L 10383192 10383245 chr3L 10383311 10383364 18 111 2.5 3.0 2.8 4.7 172 chr3L 10383192 intergenic not near genes chr3L 10383278 intergenic not near genes chr3L 10383364 intergenic not near genes chr3L_18_10380001 chr3L_10380001 RAL-439 1101 chr3L 10414945 10414978 chr3L 10417312 10417319 Doc 13 2366 7.5 3.0 5.2 2.1 2374 chr3L 10414945 intergenic CG12362 + chr3L 10416132 intergenic not near genes chr3L 10417319 intergenic not near genes chr3L_13_10415001 chr3L_10415001 RAL-439 1102 chr3L 10417581 10417600 chr3L 10417645 10417666 5 69 3.0 2.0 2.5 1.4 85 chr3L 10417581 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417666 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-439 1103 chr3L 10450676 10450708 chr3L 10450776 10450808 5 95 0.0 8.0 4.0 1.0 132 chr3L 10450676 intergenic not near genes chr3L 10450742 intergenic not near genes chr3L 10450808 intergenic not near genes chr3L_5_10450001 chr3L_10450001 RAL-439 1104 chr3L 10538689 10538712 chr3L 10538773 10538811 4 86 5.0 3.5 4.2 0.8 122 chr3L 10538689 intron A2bp1 + chr3L 10538750 intron A2bp1 + chr3L 10538811 intron A2bp1 + chr3L_4_10535001 chr3L_10535001 RAL-439 1105 chr3L 10538713 10538722 chr3L 10538772 10538821 4 82 3.0 3.5 3.2 1.0 108 chr3L 10538713 intron A2bp1 + chr3L 10538767 intron A2bp1 + chr3L 10538821 intron A2bp1 + chr3L_4_10535001 chr3L_10535001 RAL-439 1106 chr3L 10584261 10584302 chr3L 10584368 10584409 10 106 6.5 8.5 7.5 1.2 148 chr3L 10584261 intron A2bp1 + chr3L 10584335 intron A2bp1 + chr3L 10584409 intron A2bp1 + chr3L_10_10580001 chr3L_10580001 RAL-439 1107 chr3L 10600455 10600477 chr3L 10600541 10600574 5 95 4.5 3.0 3.8 1.0 119 chr3L 10600455 intergenic not near genes chr3L 10600514 intergenic not near genes chr3L 10600574 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-439 1108 chr3L 10603705 10603707 chr3L 10603871 10603881 4 181 0.0 0.0 0.0 4.0 176 chr3L 10603705 intergenic not near genes chr3L 10603793 intergenic not near genes chr3L 10603881 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-439 1109 chr3L 10613157 10613199 chr3L 10613472 10613499 14 306 2.5 4.5 3.5 3.1 342 chr3L 10613157 intergenic not near genes chr3L 10613328 intergenic not near genes chr3L 10613499 intergenic not near genes chr3L_14_10610001 chr3L_10610001 RAL-439 1110 chr3L 10621843 10621857 chr3L 10621934 10621964 8 103 7.0 2.5 4.8 1.4 121 chr3L 10621843 intergenic not near genes chr3L 10621904 intergenic not near genes chr3L 10621964 intergenic not near genes chr3L_8_10620001 chr3L_10620001 RAL-439 1111 chr3L 10653342 10653358 chr3L 10653447 10653448 5 102 3.0 10.0 6.5 0.7 106 chr3L 10653342 intron CG32066 - chr3L 10653395 intron CG32066 - chr3L 10653448 intron CG32066 - chr3L_5_10650001 chr3L_10650001 RAL-439 1112 chr3L 10658078 10658209 chr3L 10658162 10658336 17 117 0.5 0.5 0.5 11.3 258 chr3L 10658078 intron CG32066 - chr3L 10658207 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_17_10655001 chr3L_10655001 RAL-439 1113 chr3L 10694899 10694924 chr3L 10695011 10695036 7 112 2.5 2.0 2.2 2.2 137 chr3L 10694899 intron NijA - chr3L 10694968 intron NijA - chr3L 10695036 exon NijA - chr3L_7_10690001 chr3L_10690001 RAL-439 1114 chr3L 10735811 10735831 chr3L 10735920 10735926 10 106 2.5 12.0 7.2 1.2 115 chr3L 10735811 intergenic not near genes chr3L 10735868 intergenic not near genes chr3L 10735926 intergenic not near genes chr3L_10_10735001 chr3L_10735001 RAL-439 1115 chr3L 10745523 10745566 chr3L 10745623 10745666 19 94 4.0 5.0 4.5 3.5 143 chr3L 10745523 intergenic not near genes chr3L 10745594 intergenic not near genes chr3L 10745666 intergenic not near genes chr3L_19_10745001 chr3L_10745001 RAL-439 1116 chr3L 10749440 10749448 chr3L 10749518 10749547 4 94 0.0 2.0 1.0 2.0 107 chr3L 10749440 intergenic not near genes chr3L 10749494 intergenic not near genes chr3L 10749547 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-439 1117 chr3L 10887365 10887377 chr3L 10887464 10887476 5 99 0.5 11.0 5.8 0.7 111 chr3L 10887365 intergenic not near genes chr3L 10887420 intergenic not near genes chr3L 10887476 intergenic not near genes chr3L_5_10885001 chr3L_10885001 RAL-439 1118 chr3L 11180640 11180655 chr3L 11180767 11180783 6 128 4.5 7.0 5.8 0.9 143 chr3L 11180640 intron GlcAT-P - chr3L 11180712 intron GlcAT-P - chr3L 11180783 intron GlcAT-P - chr3L_6_11180001 chr3L_11180001 RAL-439 1119 chr3L 11224531 11224555 chr3L 11224668 11224682 8 138 6.5 5.0 5.8 1.2 151 chr3L 11224531 intron CG42671 + chr3L 11224606 intron CG42671 + chr3L 11224682 intron CG42671 + chr3L_8_11220001 chr3L_11220001 RAL-439 1120 chr3L 11241775 11241786 chr3L 11241872 11241878 5 99 0.5 3.0 1.8 1.8 103 chr3L 11241775 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241878 intergenic not near genes chr3L_5_11240001 chr3L_11240001 RAL-439 1121 chr3L 11264445 11264495 chr3L 11271417 11271430 17.6 10 6962 4.0 3.0 3.5 2.2 6985 chr3L 11264445 intergenic not near genes chr3L 11267938 intergenic not near genes chr3L 11271430 intergenic not near genes chr3L_10_11265001 chr3L_11265001 RAL-439 1122 chr3L 11290613 11290650 chr3L 11290947 11290993 16 340 5.0 3.0 4.0 3.2 380 chr3L 11290613 intron CG6175 - chr3L 11290803 intron CG6175 - chr3L 11290993 intron CG6175 - chr3L_16_11290001 chr3L_11290001 RAL-439 1123 chr3L 11322319 11322371 chr3L 11322431 11322483 9 91 1.5 2.5 2.0 3.0 164 chr3L 11322319 intergenic not near genes chr3L 11322401 intergenic not near genes chr3L 11322483 intergenic not near genes chr3L_9_11320001 chr3L_11320001 RAL-439 1124 chr3L 11442775 11442801 chr3L 11442880 11442896 5 95 6.5 0.0 3.2 1.2 121 chr3L 11442775 intergenic not near genes chr3L 11442836 intergenic not near genes chr3L 11442896 intergenic not near genes chr3L_5_11440001 chr3L_11440001 RAL-439 1125 chr3L 11443732 11443754 chr3L 11446759 11446781 8 3029 17.0 28.0 22.5 0.3 3049 chr3L 11443732 intergenic not near genes chr3L 11445256 5` UTR CG7557 + chr3L 11446781 intergenic CG7557 + chr3L_8_11445001 chr3L_11445001 RAL-439 1126 chr3L 11550311 11550325 chr3L 11550382 11550418 5 88 3.5 4.0 3.8 1.0 107 chr3L 11550311 intron Mob2 - chr3L 11550364 intron Mob2 - chr3L 11550418 intron Mob2 - chr3L_5_11550001 chr3L_11550001 RAL-439 1127 chr3L 11587903 11587954 chr3L 11587999 11588050 7 96 4.5 8.5 6.5 0.9 147 chr3L 11587903 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588050 intergenic rt - chr3L_7_11585001 chr3L_11585001 RAL-439 1128 chr3L 11588732 11588754 chr3L 11588888 11588898 9 160 2.0 2.0 2.0 3.0 166 chr3L 11588732 intergenic not near genes chr3L 11588815 intergenic not near genes chr3L 11588898 intergenic not near genes chr3L_9_11585001 chr3L_11585001 RAL-439 1129 chr3L 11590253 11590272 chr3L 11590363 11590382 5 109 2.5 2.5 2.5 1.4 129 chr3L 11590253 intergenic CG7377 + chr3L 11590318 intergenic CG7377 + chr3L 11590382 intergenic CG7377 +,CG33268 - chr3L_5_11590001 chr3L_11590001 RAL-439 1130 chr3L 11678082 11678125 chr3L 11678189 11678232 23 105 5.5 7.0 6.2 3.2 150 chr3L 11678082 intron CG32085 - chr3L 11678157 intron CG32085 - chr3L 11678232 intron CG32085 - chr3L_23_11675001 chr3L_11675001 RAL-439 1131 chr3L 11723068 11723110 chr3L 11727883 11727925 Doc 11 4812 2.0 10.5 6.2 1.5 4857 chr3L 11723068 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727925 3` UTR Bmcp + chr3L_11_11725001 chr3L_11725001 RAL-439 1132 chr3L 11729656 11729701 chr3L 11729752 11729791 15 94 3.0 2.5 2.8 3.9 135 chr3L 11729656 exon CG32088 + chr3L 11729724 intron CG32088 + chr3L 11729791 exon CG32088 + chr3L_15_11725001 chr3L_11725001 RAL-439 1133 chr3L 11744008 11744045 chr3L 11744121 11744136 9 108 3.0 3.5 3.2 2.1 128 chr3L 11744008 exon CG6024 - chr3L 11744072 intron CG6024 - chr3L 11744136 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-439 1134 chr3L 11811442 11811482 chr3L 11811533 11811559 12 88 1.5 1.5 1.5 4.8 117 chr3L 11811442 intron CG42255 - chr3L 11811500 intron CG42255 - chr3L 11811559 exon CG42255 - chr3L_12_11810001 chr3L_11810001 RAL-439 1135 chr3L 11833705 11833746 chr3L 11833819 11833849 4 111 1.5 6.0 3.8 0.8 144 chr3L 11833705 intergenic CycA - chr3L 11833777 intergenic CycA - chr3L 11833849 intergenic CycA - chr3L_4_11830001 chr3L_11830001 RAL-439 1136 chr3L 11843360 11843376 chr3L 11843459 11843475 8 99 1.0 7.5 4.2 1.5 115 chr3L 11843360 intergenic not near genes chr3L 11843418 intergenic not near genes chr3L 11843475 intergenic not near genes chr3L_8_11840001 chr3L_11840001 RAL-439 1137 chr3L 11846396 11846412 chr3L 11846519 11846523 5 124 0.0 0.5 0.2 4.2 127 chr3L 11846396 intergenic not near genes chr3L 11846460 intergenic not near genes chr3L 11846523 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-439 1138 chr3L 11849315 11849356 chr3L 11849435 11849471 14 112 2.5 7.5 5.0 2.3 156 chr3L 11849315 intergenic not near genes chr3L 11849393 intergenic not near genes chr3L 11849471 intergenic not near genes chr3L_14_11845001 chr3L_11845001 RAL-439 1139 chr3L 11850119 11850170 chr3L 11850234 11850271 14 110 1.5 2.5 2.0 4.7 152 chr3L 11850119 intergenic not near genes chr3L 11850195 intergenic CG44837 - chr3L 11850271 intergenic CG44837 - chr3L_14_11850001 chr3L_11850001 RAL-439 1140 chr3L 11864568 11864581 chr3L 11865852 11865896 pogo 6 1305 1.5 3.5 2.5 1.7 1328 chr3L 11864568 intron CG44837 - chr3L 11865232 intron CG44837 - chr3L 11865896 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-439 1141 chr3L 11887238 11887289 chr3L 11887355 11887381 12 112 3.5 1.5 2.5 3.4 143 chr3L 11887238 intron CG44837 - chr3L 11887310 intron,3` UTR CG44837 -,CG5897 - chr3L 11887381 intron,3` UTR CG44837 -,CG5897 - chr3L_12_11885001 chr3L_11885001 RAL-439 1142 chr3L 11943481 11943521 chr3L 11943602 11943642 12 118 6.0 6.0 6.0 1.7 161 chr3L 11943481 3` UTR Rpt4R + chr3L 11943562 intergenic Rpt4R +,CG5883 - chr3L 11943642 3` UTR CG5883 - chr3L_12_11940001 chr3L_11940001 RAL-439 1143 chr3L 12013906 12013936 chr3L 12014005 12014020 9 103 1.0 4.0 2.5 2.6 114 chr3L 12013906 intron rols - chr3L 12013963 intron rols - chr3L 12014020 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-439 1144 chr3L 12052685 12052732 chr3L 12052794 12052841 13 106 7.0 2.0 4.5 2.4 156 chr3L 12052685 intron rols - chr3L 12052763 intron rols - chr3L 12052841 intron rols - chr3L_13_12050001 chr3L_12050001 RAL-439 1145 chr3L 12075406 12075423 chr3L 12075515 12075519 4 106 5.0 0.0 2.5 1.1 113 chr3L 12075406 intron Sema-5c - chr3L 12075462 intron Sema-5c - chr3L 12075519 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-439 1146 chr3L 12075433 12075458 chr3L 12075513 12075560 5 91 3.0 0.0 1.5 2.0 127 chr3L 12075433 intron Sema-5c - chr3L 12075496 intron Sema-5c - chr3L 12075560 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-439 1147 chr3L 12083920 12083952 chr3L 12084103 12084136 6 176 22.0 4.0 13.0 0.4 216 chr3L 12083920 intergenic not near genes chr3L 12084028 intergenic not near genes chr3L 12084136 intergenic not near genes chr3L_6_12080001 chr3L_12080001 RAL-439 1148 chr3L 12092389 12092420 chr3L 12092475 12092517 6 94 3.5 3.0 3.2 1.4 128 chr3L 12092389 intergenic not near genes chr3L 12092453 intergenic not near genes chr3L 12092517 intergenic not near genes chr3L_6_12090001 chr3L_12090001 RAL-439 1149 chr3L 12119742 12119764 chr3L 12119859 12119863 6 113 10.5 3.0 6.8 0.8 121 chr3L 12119742 3` UTR ssp + chr3L 12119802 intergenic ssp +,CG11560 + chr3L 12119863 intergenic ssp +,CG11560 + chr3L_6_12115001 chr3L_12115001 RAL-439 1150 chr3L 12119767 12119787 chr3L 12119857 12119904 14 110 7.0 2.5 4.8 2.4 137 chr3L 12119767 3` UTR ssp + chr3L 12119836 intergenic ssp +,CG11560 + chr3L 12119904 intergenic CG11560 +,ssp + chr3L_14_12115001 chr3L_12115001 RAL-439 1151 chr3L 12170770 12170822 chr3L 12170872 12170902 13 92 1.0 4.0 2.5 3.7 132 chr3L 12170770 intron Rh7 - chr3L 12170836 intron Rh7 - chr3L 12170902 intron Rh7 - chr3L_13_12170001 chr3L_12170001 RAL-439 1152 chr3L 12231376 12231401 chr3L 12231655 12231696 4 287 29.5 21.0 25.2 0.2 320 chr3L 12231376 intron app - chr3L 12231536 intron app - chr3L 12231696 intron app - chr3L_4_12230001 chr3L_12230001 RAL-439 1153 chr3L 12369537 12369565 chr3L 12369625 12369675 8 106 2.5 5.0 3.8 1.7 138 chr3L 12369537 intron Ncc69 - chr3L 12369606 intron Ncc69 - chr3L 12369675 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-439 1154 chr3L 12371105 12371118 chr3L 12371188 12371208 5 89 2.5 1.0 1.8 1.8 103 chr3L 12371105 intron Ncc69 - chr3L 12371156 intron Ncc69 - chr3L 12371208 intron Ncc69 - chr3L_5_12370001 chr3L_12370001 RAL-439 1155 chr3L 12378498 12378541 chr3L 12378583 12378628 9 84 3.5 2.0 2.8 2.4 130 chr3L 12378498 intron Ncc69 - chr3L 12378563 intron Ncc69 - chr3L 12378628 intron Ncc69 - chr3L_9_12375001 chr3L_12375001 RAL-439 1156 chr3L 12381521 12381553 chr3L 12381619 12381645 13 96 2.5 0.5 1.5 5.2 124 chr3L 12381521 intron Ncc69 - chr3L 12381583 intron Ncc69 - chr3L 12381645 intron Ncc69 - chr3L_13_12380001 chr3L_12380001 RAL-439 1157 chr3L 12578047 12578049 chr3L 12578150 12578157 4 107 1.5 0.5 1.0 2.0 110 chr3L 12578047 intergenic not near genes chr3L 12578102 intergenic not near genes chr3L 12578157 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-439 1158 chr3L 12578055 12578078 chr3L 12578133 12578186 9 91 1.5 0.0 0.8 5.0 131 chr3L 12578055 intergenic not near genes chr3L 12578120 intergenic not near genes chr3L 12578186 intergenic not near genes chr3L_9_12575001 chr3L_12575001 RAL-439 1159 chr3L 12626140 12626160 chr3L 12626264 12626280 7 125 4.5 5.0 4.8 1.2 140 chr3L 12626140 intergenic not near genes chr3L 12626210 intergenic not near genes chr3L 12626280 intergenic not near genes chr3L_7_12625001 chr3L_12625001 RAL-439 1160 chr3L 12647936 12647973 chr3L 12648032 12648049 14 90 3.0 4.5 3.8 2.9 113 chr3L 12647936 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648049 5` UTR CR32111 + chr3L_14_12645001 chr3L_12645001 RAL-439 1161 chr3L 12728019 12728039 chr3L 12728123 12728132 7 102 6.5 8.0 7.2 0.9 113 chr3L 12728019 intergenic not near genes chr3L 12728076 intergenic not near genes chr3L 12728132 intergenic not near genes chr3L_7_12725001 chr3L_12725001 RAL-439 1162 chr3L 12799828 12799836 chr3L 12799940 12799964 4 124 14.5 14.0 14.2 0.3 136 chr3L 12799828 intron Atg1 - chr3L 12799896 intron Atg1 - chr3L 12799964 intron Atg1 - chr3L_4_12795001 chr3L_12795001 RAL-439 1163 chr3L 12803538 12803553 chr3L 12803810 12803825 5 272 3.5 4.5 4.0 1.0 287 chr3L 12803538 intron Atg1 - chr3L 12803682 intron Atg1 - chr3L 12803825 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-439 1164 chr3L 12803555 12803572 chr3L 12803802 12803844 11 267 3.0 4.5 3.8 2.3 289 chr3L 12803555 intron Atg1 - chr3L 12803700 intron Atg1 - chr3L 12803844 intron Atg1 - chr3L_11_12800001 chr3L_12800001 RAL-439 1165 chr3L 12874913 12874956 chr3L 12877218 12877252 jockey 8 2303 1.5 4.5 3.0 2.0 2339 chr3L 12874913 intergenic not near genes chr3L 12876082 intergenic not near genes chr3L 12877252 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-439 1166 chr3L 12894795 12894815 chr3L 12894881 12894886 6 88 20.0 9.0 14.5 0.4 91 chr3L 12894795 intergenic CG14118 + chr3L 12894840 intergenic CG14118 + chr3L 12894886 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-439 1167 chr3L 12929710 12929744 chr3L 12930046 12930080 12 331 0.5 3.5 2.0 4.0 370 chr3L 12929710 intergenic not near genes chr3L 12929895 intergenic not near genes chr3L 12930080 intergenic not near genes chr3L_12_12925001 chr3L_12925001 RAL-439 1168 chr3L 12943857 12943869 chr3L 12943968 12943980 4 110 4.5 0.0 2.2 1.2 123 chr3L 12943857 intergenic not near genes chr3L 12943918 intergenic not near genes chr3L 12943980 intergenic not near genes chr3L_4_12940001 chr3L_12940001 RAL-439 1169 chr3L 12957781 12957816 chr3L 12962268 12962317 copia 12 4498 5.0 4.5 4.8 2.1 4536 chr3L 12957781 intergenic not near genes chr3L 12960049 intergenic not near genes chr3L 12962317 intergenic not near genes chr3L_12_12960001 chr3L_12960001 RAL-439 1170 chr3L 12977723 12977774 chr3L 12977846 12977897 7 114 3.0 3.5 3.2 1.7 174 chr3L 12977723 intergenic not near genes chr3L 12977810 intergenic not near genes chr3L 12977897 intergenic not near genes chr3L_7_12975001 chr3L_12975001 RAL-439 1171 chr3L 12978301 12978325 chr3L 12978418 12978442 4 117 11.5 5.5 8.5 0.4 141 chr3L 12978301 intergenic not near genes chr3L 12978372 intergenic not near genes chr3L 12978442 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-439 1172 chr3L 12978335 12978343 chr3L 12978416 12978460 7 107 9.5 5.5 7.5 0.8 125 chr3L 12978335 intergenic not near genes chr3L 12978398 intergenic not near genes chr3L 12978460 intergenic not near genes chr3L_7_12975001 chr3L_12975001 RAL-439 1173 chr3L 12980505 12980525 chr3L 12980613 12980626 7 101 6.0 0.0 3.0 1.8 121 chr3L 12980505 intergenic not near genes chr3L 12980566 intergenic not near genes chr3L 12980626 intergenic not near genes chr3L_7_12980001 chr3L_12980001 RAL-439 1174 chr3L 13074040 13074065 chr3L 13074168 13074173 5 134 4.5 2.0 3.2 1.2 133 chr3L 13074040 intergenic not near genes chr3L 13074106 intergenic not near genes chr3L 13074173 intergenic not near genes chr3L_5_13070001 chr3L_13070001 RAL-439 1175 chr3L 13085040 13085060 chr3L 13085139 13085159 5 98 7.0 2.0 4.5 0.9 119 chr3L 13085040 intergenic not near genes chr3L 13085100 intergenic not near genes chr3L 13085159 intergenic not near genes chr3L_5_13085001 chr3L_13085001 RAL-439 1176 chr3L 13085064 13085086 chr3L 13085132 13085180 5 90 5.0 1.5 3.2 1.2 116 chr3L 13085064 intergenic not near genes chr3L 13085122 intergenic not near genes chr3L 13085180 intergenic not near genes chr3L_5_13085001 chr3L_13085001 RAL-439 1177 chr3L 13095814 13095838 chr3L 13095907 13095942 4 101 4.5 0.5 2.5 1.1 128 chr3L 13095814 intergenic not near genes chr3L 13095878 intergenic not near genes chr3L 13095942 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-439 1178 chr3L 13174246 13174270 chr3L 13174358 13174382 9 111 2.0 7.5 4.8 1.6 136 chr3L 13174246 intergenic snky + chr3L 13174314 intergenic snky + chr3L 13174382 intergenic snky + chr3L_9_13170001 chr3L_13170001 RAL-439 1179 chr3L 13194064 13194093 chr3L 13194153 13194192 8 94 1.5 5.0 3.2 1.9 128 chr3L 13194064 intergenic not near genes chr3L 13194128 intergenic not near genes chr3L 13194192 intergenic not near genes chr3L_8_13190001 chr3L_13190001 RAL-439 1180 chr3L 13206218 13206265 chr3L 13206320 13206335 6 87 2.5 0.5 1.5 2.4 117 chr3L 13206218 intergenic not near genes chr3L 13206276 intergenic not near genes chr3L 13206335 intergenic not near genes chr3L_6_13205001 chr3L_13205001 RAL-439 1181 chr3L 13222259 13222302 chr3L 13222358 13222401 8 90 2.5 7.0 4.8 1.4 142 chr3L 13222259 intergenic not near genes chr3L 13222330 intergenic not near genes chr3L 13222401 intergenic not near genes chr3L_8_13220001 chr3L_13220001 RAL-439 1182 chr3L 13311038 13311047 chr3L 13311101 13311132 5 80 1.5 2.5 2.0 1.7 94 chr3L 13311038 intergenic not near genes chr3L 13311085 intergenic not near genes chr3L 13311132 intergenic not near genes chr3L_5_13310001 chr3L_13310001 RAL-439 1183 chr3L 13315841 13315863 chr3L 13315943 13315965 7 104 3.5 7.0 5.2 1.1 124 chr3L 13315841 intergenic not near genes chr3L 13315903 intergenic not near genes chr3L 13315965 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-439 1184 chr3L 13392750 13392767 chr3L 13392853 13392855 5 97 5.5 0.0 2.8 1.3 105 chr3L 13392750 intergenic not near genes chr3L 13392802 intergenic not near genes chr3L 13392855 intergenic not near genes chr3L_5_13390001 chr3L_13390001 RAL-439 1185 chr3L 13452665 13452683 chr3L 13452753 13452758 9 94 0.0 8.0 4.0 1.8 93 chr3L 13452665 intron CG10738 + chr3L 13452712 intron CG10738 + chr3L 13452758 intron CG10738 + chr3L_9_13450001 chr3L_13450001 RAL-439 1186 chr3L 13455742 13455769 chr3L 13455908 13455931 15 170 4.0 4.0 4.0 3.0 189 chr3L 13455742 intron CG10738 + chr3L 13455836 intron CG10738 + chr3L 13455931 intron CG10738 + chr3L_15_13455001 chr3L_13455001 RAL-439 1187 chr3L 13455770 13455783 chr3L 13455905 13455958 4 156 3.5 4.0 3.8 0.8 188 chr3L 13455770 intron CG10738 + chr3L 13455864 intron CG10738 + chr3L 13455958 intron CG10738 + chr3L_4_13455001 chr3L_13455001 RAL-439 1188 chr3L 13477003 13477035 chr3L 13477100 13477121 11 93 0.0 4.0 2.0 3.7 118 chr3L 13477003 intergenic not near genes chr3L 13477062 intergenic stv + chr3L 13477121 intergenic stv + chr3L_11_13475001 chr3L_13475001 RAL-439 1189 chr3L 13525146 13525190 chr3L 13532951 13532977 roo 10 7803 5.5 4.0 4.8 1.7 7831 chr3L 13525146 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532977 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-439 1190 chr3L 13597190 13597197 chr3L 13597244 13597285 4 80 3.5 1.5 2.5 1.1 95 chr3L 13597190 intron bru-3 - chr3L 13597238 intron bru-3 - chr3L 13597285 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-439 1191 chr3L 13626673 13626709 chr3L 13626777 13626812 4 102 1.0 0.0 0.5 2.7 139 chr3L 13626673 intron bru-3 - chr3L 13626742 intron bru-3 - chr3L 13626812 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-439 1192 chr3L 13633399 13633445 chr3L 13633773 13633796 4 364 0.5 2.5 1.5 1.6 397 chr3L 13633399 intron bru-3 - chr3L 13633598 intron bru-3 - chr3L 13633796 intron bru-3 - chr3L_4_13630001 chr3L_13630001 RAL-439 1193 chr3L 13677510 13677562 chr3L 13677607 13677659 12 95 3.0 6.0 4.5 2.2 149 chr3L 13677510 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677659 intron bru-3 - chr3L_12_13675001 chr3L_13675001 RAL-439 1194 chr3L 13804526 13804535 chr3L 13822832 13822841 roo 6 18306 13.0 2.0 7.5 0.7 18315 chr3L 13804526 intergenic not near genes chr3L 13813684 intergenic not near genes chr3L 13822841 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-439 1195 chr3L 13804536 13804565 chr3L 13822830 13822845 roo 11 18291 7.0 2.0 4.5 2.0 18309 chr3L 13804536 intergenic not near genes chr3L 13813690 intergenic not near genes chr3L 13822845 intergenic not near genes chr3L_11_13810001 chr3L_13810001 RAL-439 1196 chr3L 13838917 13838951 chr3L 13839156 13839190 6 239 6.5 4.0 5.2 1.0 273 chr3L 13838917 intergenic not near genes chr3L 13839054 intergenic not near genes chr3L 13839190 intergenic not near genes chr3L_6_13835001 chr3L_13835001 RAL-439 1197 chr3L 14126201 14126233 chr3L 14126305 14126332 11 101 6.0 9.0 7.5 1.3 131 chr3L 14126201 intron Sox21b - chr3L 14126266 intron Sox21b - chr3L 14126332 intron Sox21b - chr3L_11_14125001 chr3L_14125001 RAL-439 1198 chr3L 14141394 14141412 chr3L 14141500 14141519 4 107 2.0 0.0 1.0 2.0 125 chr3L 14141394 intergenic not near genes chr3L 14141456 intergenic not near genes chr3L 14141519 intergenic not near genes chr3L_4_14140001 chr3L_14140001 RAL-439 1199 chr3L 14194702 14194740 chr3L 14194798 14194836 18 92 8.0 4.5 6.2 2.5 134 chr3L 14194702 intron nuf + chr3L 14194769 intron nuf + chr3L 14194836 intron nuf + chr3L_18_14190001 chr3L_14190001 RAL-439 1200 chr3L 14209278 14209327 chr3L 14209382 14209431 16 101 1.5 6.5 4.0 3.2 153 chr3L 14209278 intron nuf + chr3L 14209354 intron nuf + chr3L 14209431 intron nuf + chr3L_16_14205001 chr3L_14205001 RAL-439 1201 chr3L 14211420 14211467 chr3L 14211518 14211536 8 87 9.5 1.5 5.5 1.2 116 chr3L 14211420 intron nuf + chr3L 14211478 intron nuf + chr3L 14211536 intron nuf + chr3L_8_14210001 chr3L_14210001 RAL-439 1202 chr3L 14215041 14215087 chr3L 14215141 14215170 15 89 5.5 2.5 4.0 3.0 129 chr3L 14215041 intron nuf + chr3L 14215106 intron nuf + chr3L 14215170 intron nuf + chr3L_15_14215001 chr3L_14215001 RAL-439 1203 chr3L 14267375 14267392 chr3L 14271815 14271824 F-element 8 4449 7.0 8.5 7.8 0.9 4449 chr3L 14267375 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271824 intergenic not near genes chr3L_8_14265001 chr3L_14265001 RAL-439 1204 chr3L 14295992 14296009 chr3L 14296476 14296508 roo 4 491 0.5 6.5 3.5 0.9 516 chr3L 14295992 intron fz + chr3L 14296250 intron fz + chr3L 14296508 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-439 1205 chr3L 14326974 14326981 chr3L 14327105 14327127 4 147 4.5 7.0 5.8 0.6 153 chr3L 14326974 intron fz + chr3L 14327050 intron fz + chr3L 14327127 intron fz + chr3L_4_14325001 chr3L_14325001 RAL-439 1206 chr3L 14326985 14326997 chr3L 14327101 14327123 6 136 2.5 5.5 4.0 1.2 138 chr3L 14326985 intron fz + chr3L 14327054 intron fz + chr3L 14327123 intron fz + chr3L_6_14325001 chr3L_14325001 RAL-439 1207 chr3L 14341404 14341438 chr3L 14341547 14341593 4 152 1.0 0.5 0.8 2.2 189 chr3L 14341404 intron fz + chr3L 14341498 intron fz + chr3L 14341593 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-439 1208 chr3L 14462878 14462882 chr3L 14462986 14462990 4 108 0.5 1.0 0.8 2.2 112 chr3L 14462878 intron bbg - chr3L 14462934 intron bbg - chr3L 14462990 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-439 1209 chr3L 14468430 14468477 chr3L 14473655 14473703 copia 15 5224 4.5 3.5 4.0 3.0 5273 chr3L 14468430 intron bbg - chr3L 14471066 intron bbg - chr3L 14473703 intron bbg - chr3L_15_14470001 chr3L_14470001 RAL-439 1210 chr3L 14535306 14535349 chr3L 14535524 14535554 9 213 5.5 0.0 2.8 2.4 248 chr3L 14535306 intron bbg - chr3L 14535430 intron bbg - chr3L 14535554 intron bbg - chr3L_9_14535001 chr3L_14535001 RAL-439 1211 chr3L 14585617 14585641 chr3L 14585688 14585693 6 78 4.0 7.0 5.5 0.9 76 chr3L 14585617 intron HGTX - chr3L 14585655 intron HGTX - chr3L 14585693 intron HGTX - chr3L_6_14585001 chr3L_14585001 RAL-439 1212 chr3L 14741124 14741153 chr3L 14741222 14741251 5 95 5.0 8.5 6.8 0.6 127 chr3L 14741124 intron ome + chr3L 14741188 intron ome + chr3L 14741251 intron ome + chr3L_5_14740001 chr3L_14740001 RAL-439 1213 chr3L 14825143 14825154 chr3L 14832889 14832901 Stalker2 4 7744 0.0 3.5 1.8 1.4 7758 chr3L 14825143 intron CG17839 + chr3L 14829022 intron CG17839 + chr3L 14832901 intron CG17839 + chr3L_4_14825001 chr3L_14825001 RAL-439 1214 chr3L 14840342 14840387 chr3L 14840467 14840472 4 106 3.5 2.5 3.0 1.0 130 chr3L 14840342 intron CG17839 + chr3L 14840407 intron CG17839 + chr3L 14840472 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-439 1215 chr3L 14912167 14912207 chr3L 14912268 14912309 11 99 6.5 1.5 4.0 2.2 142 chr3L 14912167 intron DCX-EMAP + chr3L 14912238 intron DCX-EMAP + chr3L 14912309 intron DCX-EMAP + chr3L_11_14910001 chr3L_14910001 RAL-439 1216 chr3L 14970747 14970765 chr3L 14971076 14971094 F-element 7 329 8.5 4.5 6.5 0.9 347 chr3L 14970747 intergenic Tom + chr3L 14970920 intergenic not near genes chr3L 14971094 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-439 1217 chr3L 15085031 15085078 chr3L 15086217 15086264 1360 4 1186 10.5 4.0 7.2 0.5 1233 chr3L 15085031 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086264 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-439 1218 chr3L 15146144 15146172 chr3L 15146241 15146281 6 101 0.0 7.5 3.8 1.2 137 chr3L 15146144 3` UTR Pex3 + chr3L 15146212 3` UTR Pex3 + chr3L 15146281 3` UTR Pex3 + chr3L_6_15145001 chr3L_15145001 RAL-439 1219 chr3L 15193674 15193726 chr3L 15193863 15193915 12 185 1.5 5.5 3.5 2.7 241 chr3L 15193674 intergenic not near genes chr3L 15193794 intergenic not near genes chr3L 15193915 intergenic not near genes chr3L_12_15190001 chr3L_15190001 RAL-439 1220 chr3L 15219724 15219775 chr3L 15219826 15219860 6 98 3.0 4.5 3.8 1.2 136 chr3L 15219724 intergenic not near genes chr3L 15219792 intergenic not near genes chr3L 15219860 intergenic not near genes chr3L_6_15215001 chr3L_15215001 RAL-439 1221 chr3L 15257412 15257428 chr3L 15257645 15257661 4 233 3.5 0.5 2.0 1.3 249 chr3L 15257412 intergenic not near genes chr3L 15257536 intergenic not near genes chr3L 15257661 intergenic not near genes chr3L_4_15255001 chr3L_15255001 RAL-439 1222 chr3L 15281983 15282001 chr3L 15282134 15282162 6 158 1.0 4.5 2.8 1.6 179 chr3L 15281983 intergenic not near genes chr3L 15282072 intergenic not near genes chr3L 15282162 intergenic not near genes chr3L_6_15280001 chr3L_15280001 RAL-439 1223 chr3L 15286508 15286555 chr3L 15286664 15286698 8 151 1.5 0.0 0.8 4.4 190 chr3L 15286508 intergenic not near genes chr3L 15286603 intergenic not near genes chr3L 15286698 intergenic not near genes chr3L_8_15285001 chr3L_15285001 RAL-439 1224 chr3L 15295749 15295768 chr3L 15298612 15298631 gypsy5 8 2862 12.5 10.5 11.5 0.6 2882 chr3L 15295749 intergenic not near genes chr3L 15297190 intergenic not near genes chr3L 15298631 intergenic Best4 + chr3L_8_15295001 chr3L_15295001 RAL-439 1225 chr3L 15295771 15295779 chr3L 15298611 15298637 gypsy5 4 2856 12.5 8.5 10.5 0.3 2866 chr3L 15295771 intergenic not near genes chr3L 15297204 intergenic not near genes chr3L 15298637 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-439 1226 chr3L 15402722 15402741 chr3L 15402897 15402918 5 176 0.5 4.5 2.5 1.4 196 chr3L 15402722 intergenic not near genes chr3L 15402820 intergenic not near genes chr3L 15402918 intergenic not near genes chr3L_5_15400001 chr3L_15400001 RAL-439 1227 chr3L 15423740 15423781 chr3L 15426604 15426645 opus 16 2861 7.0 3.5 5.2 2.6 2905 chr3L 15423740 intergenic not near genes chr3L 15425192 intergenic not near genes chr3L 15426645 intergenic not near genes chr3L_16_15425001 chr3L_15425001 RAL-439 1228 chr3L 15443576 15443603 chr3L 15443672 15443683 5 93 7.5 3.5 5.5 0.8 107 chr3L 15443576 intergenic not near genes chr3L 15443630 intergenic not near genes chr3L 15443683 intergenic not near genes chr3L_5_15440001 chr3L_15440001 RAL-439 1229 chr3L 15466028 15466035 chr3L 15466123 15466137 4 98 6.0 0.0 3.0 1.0 109 chr3L 15466028 intergenic not near genes chr3L 15466082 intergenic not near genes chr3L 15466137 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-439 1230 chr3L 15466045 15466138 chr3L 15466122 15466254 10 107 0.0 0.0 0.0 10.0 209 chr3L 15466045 intergenic not near genes chr3L 15466150 intergenic not near genes chr3L 15466254 intergenic not near genes chr3L_10_15465001 chr3L_15465001 RAL-439 1231 chr3L 15466502 15466551 chr3L 15466606 15466628 7 96 1.0 1.0 1.0 3.5 126 chr3L 15466502 intergenic not near genes chr3L 15466565 intergenic not near genes chr3L 15466628 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-439 1232 chr3L 15493294 15493347 chr3L 15493409 15493462 5 111 1.5 0.0 0.8 2.8 168 chr3L 15493294 exon CG12355 - chr3L 15493378 intron CG12355 - chr3L 15493462 intron CG12355 - chr3L_5_15490001 chr3L_15490001 RAL-439 1233 chr3L 15514007 15514053 chr3L 15514433 15514479 12 422 6.0 1.5 3.8 2.5 472 chr3L 15514007 intergenic not near genes chr3L 15514243 intergenic not near genes chr3L 15514479 intergenic not near genes chr3L_12_15510001 chr3L_15510001 RAL-439 1234 chr3L 15541602 15541652 chr3L 15541713 15541763 9 106 4.5 6.0 5.2 1.5 161 chr3L 15541602 intron CrebA + chr3L 15541682 intron CrebA + chr3L 15541763 intron CrebA + chr3L_9_15540001 chr3L_15540001 RAL-439 1235 chr3L 15541964 15541982 chr3L 15542042 15542061 5 100 0.5 6.0 3.2 1.2 97 chr3L 15541964 intron CrebA + chr3L 15542012 intron CrebA + chr3L 15542061 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-439 1236 chr3L 15554922 15554952 chr3L 15556709 15556759 S-element 15 1799 7.0 4.5 5.8 2.2 1837 chr3L 15554922 intron AGO2 + chr3L 15555840 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_15_15555001 chr3L_15555001 RAL-439 1237 chr3L 15600148 15600192 chr3L 15600253 15600313 4 117 4.5 0.0 2.2 1.2 165 chr3L 15600148 intron RhoGAP71E + chr3L 15600230 intron RhoGAP71E + chr3L 15600313 intron RhoGAP71E + chr3L_4_15600001 chr3L_15600001 RAL-439 1238 chr3L 15633163 15633216 chr3L 15633263 15633316 7 95 2.5 1.5 2.0 2.3 153 chr3L 15633163 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633316 intron comm3 - chr3L_7_15630001 chr3L_15630001 RAL-439 1239 chr3L 15641798 15641812 chr3L 15641878 15641916 6 100 0.0 3.5 1.8 2.1 118 chr3L 15641798 intron comm3 - chr3L 15641857 intron comm3 - chr3L 15641916 intron comm3 - chr3L_6_15640001 chr3L_15640001 RAL-439 1240 chr3L 15754468 15754503 chr3L 15754580 15754611 5 110 0.0 4.0 2.0 1.7 143 chr3L 15754468 intergenic not near genes chr3L 15754540 intergenic not near genes chr3L 15754611 intergenic not near genes chr3L_5_15750001 chr3L_15750001 RAL-439 1241 chr3L 15782558 15782583 chr3L 15782670 15782705 9 120 0.0 9.5 4.8 1.6 147 chr3L 15782558 intergenic not near genes chr3L 15782632 intergenic not near genes chr3L 15782705 intergenic not near genes chr3L_9_15780001 chr3L_15780001 RAL-439 1242 chr3L 15883183 15883210 chr3L 15883486 15883519 5 305 4.5 1.0 2.8 1.3 336 chr3L 15883183 intron pHCl - chr3L 15883351 intron pHCl - chr3L 15883519 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-439 1243 chr3L 15883215 15883224 chr3L 15883485 15883536 4 293 2.5 0.5 1.5 1.6 321 chr3L 15883215 intron pHCl - chr3L 15883376 intron pHCl - chr3L 15883536 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-439 1244 chr3L 15929222 15929226 chr3L 15938383 15938393 roo 4 9166 0.0 16.0 8.0 0.4 9171 chr3L 15929222 intron Pka-C3 - chr3L 15933808 intron Pka-C3 - chr3L 15938393 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-439 1245 chr3L 16060477 16060496 chr3L 16060636 16060645 6 157 3.5 3.5 3.5 1.3 168 chr3L 16060477 intron Mbs + chr3L 16060561 intron Mbs + chr3L 16060645 intron Mbs + chr3L_6_16060001 chr3L_16060001 RAL-439 1246 chr3L 16060499 16060512 chr3L 16060630 16060641 5 146 2.5 3.0 2.8 1.3 142 chr3L 16060499 intron Mbs + chr3L 16060570 intron Mbs + chr3L 16060641 intron Mbs + chr3L_5_16060001 chr3L_16060001 RAL-439 1247 chr3L 16070724 16070762 chr3L 16070821 16070854 11 95 3.5 4.5 4.0 2.2 130 chr3L 16070724 intron Mbs + chr3L 16070789 intron Mbs + chr3L 16070854 exon Mbs + chr3L_11_16070001 chr3L_16070001 RAL-439 1248 chr3L 16149183 16149231 chr3L 16149292 16149340 17 104 4.0 2.0 3.0 4.2 157 chr3L 16149183 intron CG5151 - chr3L 16149262 intron CG5151 - chr3L 16149340 intron CG5151 - chr3L_17_16145001 chr3L_16145001 RAL-439 1249 chr3L 16184098 16184136 chr3L 16188927 16188971 X-element 8 4827 8.5 2.5 5.5 1.2 4873 chr3L 16184098 intergenic not near genes chr3L 16186534 intergenic not near genes chr3L 16188971 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-439 1250 chr3L 16239918 16239948 chr3L 16240014 16240044 15 95 5.0 5.0 5.0 2.5 126 chr3L 16239918 intergenic l(3)72Dr + chr3L 16239981 intergenic not near genes chr3L 16240044 intergenic not near genes chr3L_15_16235001 chr3L_16235001 RAL-439 1251 chr3L 16252084 16252098 chr3L 16252202 16252242 4 138 1.5 1.0 1.2 1.8 158 chr3L 16252084 5` UTR CG13055 - chr3L 16252163 5` UTR CG13055 - chr3L 16252242 5` UTR CG13055 - chr3L_4_16250001 chr3L_16250001 RAL-439 1252 chr3L 16340249 16340285 chr3L 16340387 16340429 5 142 3.0 3.5 3.2 1.2 180 chr3L 16340249 intron CG4998 + chr3L 16340339 intron CG4998 + chr3L 16340429 intron CG4998 + chr3L_5_16340001 chr3L_16340001 RAL-439 1253 chr3L 16412054 16412072 chr3L 16412358 16412386 13 307 32.0 48.0 40.0 0.3 332 chr3L 16412054 intergenic fax - chr3L 16412220 intergenic fax - chr3L 16412386 intergenic TMS1 + chr3L_13_16410001 chr3L_16410001 RAL-439 1254 chr3L 16431811 16431862 chr3L 16431925 16431972 11 114 2.5 2.0 2.2 3.4 161 chr3L 16431811 intron,intron CG33158 +,dsx-c73A - chr3L 16431892 intron,intron CG33158 +,dsx-c73A - chr3L 16431972 intron,intron CG33158 +,dsx-c73A - chr3L_11_16430001 chr3L_16430001 RAL-439 1255 chr3L 16443839 16443878 chr3L 16446188 16446227 Doc 17 2352 4.0 3.0 3.5 3.8 2388 chr3L 16443839 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446227 intron,intron CG33158 +,dsx-c73A - chr3L_17_16445001 chr3L_16445001 RAL-439 1256 chr3L 16457531 16457543 chr3L 16457643 16457658 4 112 3.5 5.5 4.5 0.7 127 chr3L 16457531 intron CG33158 + chr3L 16457594 intron CG33158 + chr3L 16457658 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-439 1257 chr3L 16493956 16494012 chr3L 16494493 16494529 jockey 10 525 7.5 5.5 6.5 1.3 573 chr3L 16493956 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494242 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_10_16490001 chr3L_16490001 RAL-439 1258 chr3L 16533544 16533587 chr3L 16533675 16533718 10 129 3.5 5.5 4.5 1.8 174 chr3L 16533544 intron CG43373 - chr3L 16533631 intron CG43373 - chr3L 16533718 intron CG43373 - chr3L_10_16530001 chr3L_16530001 RAL-439 1259 chr3L 16537829 16537881 chr3L 16537936 16537988 17 105 3.5 5.0 4.2 3.3 159 chr3L 16537829 intron CG43373 - chr3L 16537908 intron CG43373 - chr3L 16537988 intron CG43373 - chr3L_17_16535001 chr3L_16535001 RAL-439 1260 chr3L 16540035 16540078 chr3L 16540143 16540176 18 105 8.0 3.5 5.8 2.6 141 chr3L 16540035 intron CG43373 - chr3L 16540106 intron CG43373 - chr3L 16540176 intron CG43373 - chr3L_18_16540001 chr3L_16540001 RAL-439 1261 chr3L 16563215 16563257 chr3L 16563312 16563338 9 91 4.0 0.5 2.2 2.8 123 chr3L 16563215 intergenic Mipp1 - chr3L 16563276 intergenic Mipp1 - chr3L 16563338 intergenic Mipp1 - chr3L_9_16560001 chr3L_16560001 RAL-439 1262 chr3L 16610671 16610712 chr3L 16610769 16610817 15 99 4.0 4.0 4.0 3.0 146 chr3L 16610671 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610817 exon Su(P) - chr3L_15_16610001 chr3L_16610001 RAL-439 1263 chr3L 16616490 16616542 chr3L 16621838 16621865 297 12 5339 5.0 2.0 3.5 2.7 5375 chr3L 16616490 3` UTR Abl - chr3L 16619178 3` UTR Abl - chr3L 16621865 3` UTR Abl - chr3L_12_16615001 chr3L_16615001 RAL-439 1264 chr3L 16643734 16643755 chr3L 16643850 16643871 6 116 4.0 0.0 2.0 2.0 137 chr3L 16643734 intron Abl - chr3L 16643802 intron Abl - chr3L 16643871 intron Abl - chr3L_6_16640001 chr3L_16640001 RAL-439 1265 chr3L 16684000 16684045 chr3L 16689241 16689281 copia 16 5238 5.0 3.5 4.2 3.1 5281 chr3L 16684000 intron,intron Lasp -,CG43954 - chr3L 16686640 intron,intron Lasp -,CG43954 - chr3L 16689281 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_16_16685001 chr3L_16685001 RAL-439 1266 chr3L 16714829 16714871 chr3L 16714933 16714933 12 99 5.5 4.0 4.8 2.1 104 chr3L 16714829 intron Dab + chr3L 16714881 intron Dab + chr3L 16714933 intron Dab + chr3L_12_16710001 chr3L_16710001 RAL-439 1267 chr3L 16735878 16735885 chr3L 16735979 16735988 5 115 2.0 9.5 5.8 0.7 110 chr3L 16735878 intron CG9701 + chr3L 16735933 intron CG9701 + chr3L 16735988 intron CG9701 + chr3L_5_16735001 chr3L_16735001 RAL-439 1268 chr3L 16817330 16817351 chr3L 16817438 16817459 4 106 0.0 3.0 1.5 1.6 129 chr3L 16817330 intron,intron nudC +,CG13024 - chr3L 16817394 intron,intron nudC +,CG13024 - chr3L 16817459 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-439 1269 chr3L 16818731 16818780 chr3L 16818822 16818876 16 93 4.0 4.0 4.0 3.2 145 chr3L 16818731 intron,intron nudC +,CG13024 - chr3L 16818804 intron,intron nudC +,CG13024 - chr3L 16818876 intron,intron nudC +,CG13024 - chr3L_16_16815001 chr3L_16815001 RAL-439 1270 chr3L 16845004 16845037 chr3L 16845137 16845170 5 132 3.0 8.0 5.5 0.8 166 chr3L 16845004 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845087 intergenic CG9669 -,CG9715 + chr3L 16845170 intergenic CG9669 -,CG9715 + chr3L_5_16845001 chr3L_16845001 RAL-439 1271 chr3L 16869567 16869582 chr3L 16869669 16869684 4 100 6.5 8.5 7.5 0.5 117 chr3L 16869567 intron Lmpt + chr3L 16869626 intron Lmpt + chr3L 16869684 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-439 1272 chr3L 16869584 16869607 chr3L 16869660 16869710 7 90 4.0 7.0 5.5 1.1 126 chr3L 16869584 intron Lmpt + chr3L 16869647 intron Lmpt + chr3L 16869710 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-439 1273 chr3L 16870846 16870896 chr3L 16870958 16871007 10 109 2.5 1.0 1.8 3.6 161 chr3L 16870846 intron Lmpt + chr3L 16870926 intron Lmpt + chr3L 16871007 intron Lmpt + chr3L_10_16870001 chr3L_16870001 RAL-439 1274 chr3L 16945728 16945761 chr3L 16954885 16954896 roo 8 9150 4.0 3.5 3.8 1.7 9168 chr3L 16945728 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_8_16950001 chr3L_16950001 RAL-439 1275 chr3L 16973377 16973394 chr3L 23583082 23583089 5 6609703 12.0 18.0 15.0 0.3 6609712 chr3L 16973377 intron Exn + chr3L 20278233 exon gogo - chr3L 23583089 intron AGO3 + chr3L_5_20275001 chr3L_20275001 RAL-439 1276 chr3L 17026810 17026817 chr3L 17026872 17026918 4 83 4.5 4.0 4.2 0.8 108 chr3L 17026810 3` UTR Fit2 + chr3L 17026864 3` UTR Fit2 + chr3L 17026918 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-439 1277 chr3L 17027152 17027159 chr3L 17027263 17027271 5 112 3.0 8.0 5.5 0.8 119 chr3L 17027152 intergenic Fit2 +,CG7730 + chr3L 17027212 intergenic Fit2 +,CG7730 + chr3L 17027271 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-439 1278 chr3L 17027164 17027188 chr3L 17027261 17027300 14 108 1.0 7.0 4.0 2.8 136 chr3L 17027164 intergenic Fit2 +,CG7730 + chr3L 17027232 intergenic Fit2 +,CG7730 + chr3L 17027300 intergenic Fit2 +,CG7730 + chr3L_14_17025001 chr3L_17025001 RAL-439 1279 chr3L 17034914 17034973 chr3L 17035122 17035126 G2 16 196 3.0 5.5 4.2 3.1 212 chr3L 17034914 intergenic not near genes chr3L 17035020 intergenic not near genes chr3L 17035126 intergenic not near genes chr3L_16_17035001 chr3L_17035001 RAL-439 1280 chr3L 17217260 17217280 chr3L 17217344 17217380 5 96 1.5 12.5 7.0 0.6 120 chr3L 17217260 intron Rbp6 - chr3L 17217320 intron Rbp6 - chr3L 17217380 intron Rbp6 - chr3L_5_17215001 chr3L_17215001 RAL-439 1281 chr3L 17217281 17217284 chr3L 17217336 17217384 4 88 3.0 10.5 6.8 0.5 103 chr3L 17217281 intron Rbp6 - chr3L 17217332 intron Rbp6 - chr3L 17217384 intron Rbp6 - chr3L_4_17215001 chr3L_17215001 RAL-439 1282 chr3L 17237366 17237403 chr3L 17237538 17237545 11 166 6.5 0.0 3.2 2.6 179 chr3L 17237366 intron Rbp6 - chr3L 17237456 intron Rbp6 - chr3L 17237545 intron Rbp6 - chr3L_11_17235001 chr3L_17235001 RAL-439 1283 chr3L 17310083 17310089 chr3L 17310192 17310198 4 109 0.0 5.5 2.8 1.1 115 chr3L 17310083 intergenic not near genes chr3L 17310140 intergenic not near genes chr3L 17310198 intergenic not near genes chr3L_4_17310001 chr3L_17310001 RAL-439 1284 chr3L 17331043 17331087 chr3L 17331153 17331197 12 109 4.0 1.5 2.8 3.2 154 chr3L 17331043 intergenic not near genes chr3L 17331120 intergenic not near genes chr3L 17331197 intergenic not near genes chr3L_12_17330001 chr3L_17330001 RAL-439 1285 chr3L 17408907 17408917 chr3L 17408993 17409013 4 94 9.0 6.5 7.8 0.5 106 chr3L 17408907 intron blot - chr3L 17408960 intron blot - chr3L 17409013 intron blot - chr3L_4_17405001 chr3L_17405001 RAL-439 1286 chr3L 17488053 17488095 chr3L 17488145 17488164 8 90 4.5 1.5 3.0 2.0 111 chr3L 17488053 intron Oatp74D + chr3L 17488108 5` UTR Oatp74D + chr3L 17488164 5` UTR Oatp74D + chr3L_8_17485001 chr3L_17485001 RAL-439 1287 chr3L 17498086 17498111 chr3L 17498183 17498203 5 94 0.0 1.5 0.8 2.8 117 chr3L 17498086 intron Oatp74D + chr3L 17498144 intron Oatp74D + chr3L 17498203 intron Oatp74D + chr3L_5_17495001 chr3L_17495001 RAL-439 1288 chr3L 17580566 17580604 chr3L 17580762 17580765 7 184 6.0 1.0 3.5 1.6 199 chr3L 17580566 intron Eip74EF - chr3L 17580666 intron Eip74EF - chr3L 17580765 intron Eip74EF - chr3L_7_17580001 chr3L_17580001 RAL-439 1289 chr3L 17585315 17585361 chr3L 17585645 17585671 7 315 42.5 44.5 43.5 0.2 356 chr3L 17585315 intron Eip74EF - chr3L 17585493 intron Eip74EF - chr3L 17585671 intron Eip74EF - chr3L_7_17585001 chr3L_17585001 RAL-439 1290 chr3L 17592769 17592815 chr3L 17592880 17592921 23 105 1.0 4.5 2.8 6.1 152 chr3L 17592769 intron Eip74EF - chr3L 17592845 intron Eip74EF - chr3L 17592921 intron Eip74EF - chr3L_23_17590001 chr3L_17590001 RAL-439 1291 chr3L 17730827 17730884 chr3L 17738178 17738219 mdg1 9 7347 4.0 4.0 4.0 1.8 7392 chr3L 17730827 intron Ccn + chr3L 17734523 intron Ccn + chr3L 17738219 intron Ccn + chr3L_9_17730001 chr3L_17730001 RAL-439 1292 chr3L 17789826 17789876 chr3L 17789922 17789972 15 91 7.5 7.0 7.2 1.8 146 chr3L 17789826 intergenic not near genes chr3L 17789899 intergenic not near genes chr3L 17789972 intergenic not near genes chr3L_15_17785001 chr3L_17785001 RAL-439 1293 chr3L 17790596 17790628 chr3L 17790868 17790889 7 277 1.5 3.5 2.5 2.0 293 chr3L 17790596 intergenic CG42815 - chr3L 17790742 intergenic CG42815 - chr3L 17790889 intergenic CG42815 - chr3L_7_17790001 chr3L_17790001 RAL-439 1294 chr3L 17799792 17799838 chr3L 17801597 17801638 S-element 24 1800 7.0 5.5 6.2 3.3 1846 chr3L 17799792 intron NUCB1 - chr3L 17800715 intron NUCB1 - chr3L 17801638 intron NUCB1 - chr3L_24_17800001 chr3L_17800001 RAL-439 1295 chr3L 17834323 17834340 chr3L 17834500 17834524 4 182 2.5 7.5 5.0 0.7 201 chr3L 17834323 intron Grd + chr3L 17834424 intron Grd + chr3L 17834524 intron Grd + chr3L_4_17830001 chr3L_17830001 RAL-439 1296 chr3L 17837603 17837651 chr3L 17837711 17837724 10 100 1.5 2.5 2.0 3.3 121 chr3L 17837603 exon Grd + chr3L 17837664 intron Grd + chr3L 17837724 intron Grd + chr3L_10_17835001 chr3L_17835001 RAL-439 1297 chr3L 17918363 17918405 chr3L 17921186 17921212 opus 7 2819 0.5 6.5 3.5 1.6 2849 chr3L 17918363 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921212 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-439 1298 chr3L 17957412 17957435 chr3L 17957491 17957517 5 89 3.0 4.0 3.5 1.1 105 chr3L 17957412 intron Eip75B - chr3L 17957464 intron Eip75B - chr3L 17957517 intron Eip75B - chr3L_5_17955001 chr3L_17955001 RAL-439 1299 chr3L 18006203 18006252 chr3L 18006347 18006396 15 143 8.0 3.5 5.8 2.2 193 chr3L 18006203 intron Eip75B - chr3L 18006300 intron Eip75B - chr3L 18006396 intron Eip75B - chr3L_15_18005001 chr3L_18005001 RAL-439 1300 chr3L 18013950 18013985 chr3L 18014059 18014071 4 103 10.0 0.5 5.2 0.6 121 chr3L 18013950 intron Eip75B - chr3L 18014010 intron Eip75B - chr3L 18014071 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-439 1301 chr3L 18029940 18029985 chr3L 18030037 18030047 7 87 3.0 0.0 1.5 2.8 107 chr3L 18029940 intron Eip75B - chr3L 18029994 intron Eip75B - chr3L 18030047 intron Eip75B - chr3L_7_18030001 chr3L_18030001 RAL-439 1302 chr3L 18047691 18047734 chr3L 18056763 18056798 roo 9 9065 3.5 4.0 3.8 1.9 9107 chr3L 18047691 intron Eip75B - chr3L 18052244 intron Eip75B - chr3L 18056798 intron Eip75B - chr3L_9_18050001 chr3L_18050001 RAL-439 1303 chr3L 18064050 18064073 chr3L 18064150 18064179 5 104 3.0 3.5 3.2 1.2 129 chr3L 18064050 intron Eip75B - chr3L 18064114 intron Eip75B - chr3L 18064179 intron Eip75B - chr3L_5_18060001 chr3L_18060001 RAL-439 1304 chr3L 18092763 18092790 chr3L 18092898 18092910 11 132 5.0 0.0 2.5 3.1 147 chr3L 18092763 intron CG13698 - chr3L 18092836 intron CG13698 - chr3L 18092910 intron CG13698 - chr3L_11_18090001 chr3L_18090001 RAL-439 1305 chr3L 18119611 18119676 chr3L 18119743 18119782 16 114 0.5 5.5 3.0 4.0 171 chr3L 18119611 intron CG7341 + chr3L 18119696 intron CG7341 + chr3L 18119782 intron CG7341 + chr3L_16_18115001 chr3L_18115001 RAL-439 1306 chr3L 18124401 18124427 chr3L 18124505 18124531 6 97 2.5 8.0 5.2 1.0 130 chr3L 18124401 intergenic not near genes chr3L 18124466 intergenic not near genes chr3L 18124531 intergenic not near genes chr3L_6_18120001 chr3L_18120001 RAL-439 1307 chr3L 18133000 18133047 chr3L 18133110 18133131 24 107 4.0 0.0 2.0 8.0 131 chr3L 18133000 intergenic Cyp312a1 - chr3L 18133066 intergenic Cyp312a1 - chr3L 18133131 intergenic Cyp312a1 - chr3L_24_18130001 chr3L_18130001 RAL-439 1308 chr3L 18163969 18164239 chr3L 18164190 18164408 21 203 0.0 0.0 0.0 21.0 439 chr3L 18163969 intergenic not near genes chr3L 18164188 intergenic not near genes chr3L 18164408 intergenic not near genes chr3L_21_18160001 chr3L_18160001 RAL-439 1309 chr3L 18172670 18172702 chr3L 18172766 18172783 16 92 5.0 8.5 6.8 2.1 113 chr3L 18172670 intron W - chr3L 18172726 intron W - chr3L 18172783 intron W - chr3L_16_18170001 chr3L_18170001 RAL-439 1310 chr3L 18175812 18175839 chr3L 18176061 18176097 12 256 5.0 7.0 6.0 1.7 285 chr3L 18175812 intron W - chr3L 18175954 intron W - chr3L 18176097 intron W - chr3L_12_18175001 chr3L_18175001 RAL-439 1311 chr3L 18198929 18198931 chr3L 24821492 24821494 16 6622563 0.5 6.0 3.2 3.8 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_16_21510001 chr3L_21510001 RAL-439 1312 chr3L 18221083 18221124 chr3L 18221184 18221189 6 85 3.0 0.5 1.8 2.1 106 chr3L 18221083 intergenic not near genes chr3L 18221136 intergenic not near genes chr3L 18221189 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-439 1313 chr3L 18223158 18223162 chr3L 18223247 18223265 4 100 7.0 1.5 4.2 0.8 107 chr3L 18223158 intergenic not near genes chr3L 18223212 intergenic not near genes chr3L 18223265 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-439 1314 chr3L 18239874 18239896 chr3L 18239969 18239972 9 92 4.0 5.0 4.5 1.6 98 chr3L 18239874 intergenic not near genes chr3L 18239923 intergenic not near genes chr3L 18239972 intergenic not near genes chr3L_9_18235001 chr3L_18235001 RAL-439 1315 chr3L 18258837 18258883 chr3L 18258983 18259029 7 141 1.5 2.0 1.8 2.5 192 chr3L 18258837 intergenic not near genes chr3L 18258933 intergenic not near genes chr3L 18259029 intergenic not near genes chr3L_7_18255001 chr3L_18255001 RAL-439 1316 chr3L 18262453 18262459 chr3L 18262555 18262562 4 103 12.0 4.0 8.0 0.4 109 chr3L 18262453 intergenic not near genes chr3L 18262508 intergenic not near genes chr3L 18262562 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-439 1317 chr3L 18262460 18262485 chr3L 18262553 18262588 6 101 7.0 3.5 5.2 1.0 128 chr3L 18262460 intergenic not near genes chr3L 18262524 intergenic not near genes chr3L 18262588 intergenic not near genes chr3L_6_18260001 chr3L_18260001 RAL-439 1318 chr3L 18342021 18342102 chr3L 18342102 18342180 7 114 0.0 0.0 0.0 7.0 159 chr3L 18342021 intergenic not near genes chr3L 18342100 intergenic not near genes chr3L 18342180 intergenic not near genes chr3L_7_18340001 chr3L_18340001 RAL-439 1319 chr3L 18376060 18376109 chr3L 18376169 18376198 8 101 2.0 0.5 1.2 3.6 138 chr3L 18376060 intergenic not near genes chr3L 18376129 intergenic not near genes chr3L 18376198 intergenic not near genes chr3L_8_18375001 chr3L_18375001 RAL-439 1320 chr3L 18406112 18406153 chr3L 18406208 18406248 5 88 3.0 4.0 3.5 1.1 136 chr3L 18406112 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406248 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-439 1321 chr3L 18408726 18408760 chr3L 18408818 18408846 16 99 4.5 6.0 5.2 2.6 120 chr3L 18408726 intergenic not near genes chr3L 18408786 intergenic not near genes chr3L 18408846 intergenic not near genes chr3L_16_18405001 chr3L_18405001 RAL-439 1322 chr3L 18436044 18436094 chr3L 18436161 18436202 19 116 2.0 8.5 5.2 3.1 158 chr3L 18436044 intergenic not near genes chr3L 18436123 intergenic not near genes chr3L 18436202 intergenic not near genes chr3L_19_18435001 chr3L_18435001 RAL-439 1323 chr3L 18448600 18448612 chr3L 18448712 18448724 6 111 12.5 5.5 9.0 0.6 124 chr3L 18448600 intergenic not near genes chr3L 18448662 intergenic not near genes chr3L 18448724 intergenic not near genes chr3L_6_18445001 chr3L_18445001 RAL-439 1324 chr3L 18456278 18456301 chr3L 18456363 18456380 6 96 4.5 5.0 4.8 1.0 102 chr3L 18456278 intergenic CR44670 - chr3L 18456329 intergenic CR44670 - chr3L 18456380 intergenic CR44670 - chr3L_6_18455001 chr3L_18455001 RAL-439 1325 chr3L 18506131 18506163 chr3L 18509594 18509616 F-element 6 3471 3.5 6.5 5.0 1.0 3485 chr3L 18506131 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509616 intergenic not near genes chr3L_6_18505001 chr3L_18505001 RAL-439 1326 chr3L 18528623 18528656 chr3L 18537788 18537837 roo 10 9169 4.5 5.5 5.0 1.7 9214 chr3L 18528623 intergenic not near genes chr3L 18533230 intergenic not near genes chr3L 18537837 intergenic not near genes chr3L_10_18530001 chr3L_18530001 RAL-439 1327 chr3L 18546681 18546733 chr3L 18546795 18546804 4 98 0.5 2.5 1.5 1.6 123 chr3L 18546681 intergenic not near genes chr3L 18546742 intergenic not near genes chr3L 18546804 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-439 1328 chr3L 18564279 18564312 chr3L 18564379 18564411 17 96 8.5 6.5 7.5 2.0 132 chr3L 18564279 intron AstC-R1 + chr3L 18564345 intron AstC-R1 + chr3L 18564411 intron AstC-R1 + chr3L_17_18560001 chr3L_18560001 RAL-439 1329 chr3L 18593933 18593981 chr3L 18595933 18595960 Doc 12 1994 4.5 4.0 4.2 2.3 2027 chr3L 18593933 intergenic term - chr3L 18594946 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_12_18590001 chr3L_18590001 RAL-439 1330 chr3L 18603137 18603170 chr3L 18603236 18603270 4 100 0.0 2.5 1.2 1.8 133 chr3L 18603137 intron,intron CG13380 -,CG4174 - chr3L 18603204 intron,intron CG13380 -,CG4174 - chr3L 18603270 intron,intron CG13380 -,CG4174 - chr3L_4_18600001 chr3L_18600001 RAL-439 1331 chr3L 18647678 18647724 chr3L 18647786 18647802 15 105 5.5 3.5 4.5 2.7 124 chr3L 18647678 intron MYPT-75D + chr3L 18647740 intron MYPT-75D + chr3L 18647802 intron MYPT-75D + chr3L_15_18645001 chr3L_18645001 RAL-439 1332 chr3L 18710781 18710792 chr3L 18718741 18718762 Stalker2 4 7968 5.0 2.5 3.8 0.8 7981 chr3L 18710781 intergenic not near genes chr3L 18714772 intergenic not near genes chr3L 18718762 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-439 1333 chr3L 18721783 18721800 chr3L 18721864 18721911 4 100 2.0 6.5 4.2 0.8 128 chr3L 18721783 intergenic CG12477 - chr3L 18721847 intergenic CG12477 - chr3L 18721911 3` UTR CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-439 1334 chr3L 18736043 18736057 chr3L 18736158 18736172 6 113 4.5 6.0 5.2 1.0 129 chr3L 18736043 intergenic not near genes chr3L 18736108 intergenic not near genes chr3L 18736172 intergenic not near genes chr3L_6_18735001 chr3L_18735001 RAL-439 1335 chr3L 18772391 18772436 chr3L 18781091 18781111 roo 13 8695 5.0 1.5 3.2 3.1 8720 chr3L 18772391 intron ftz-f1 - chr3L 18776751 intron ftz-f1 - chr3L 18781111 intron ftz-f1 - chr3L_13_18775001 chr3L_18775001 RAL-439 1336 chr3L 18784378 18784400 chr3L 18784487 18784509 10 109 9.0 8.5 8.8 1.0 131 chr3L 18784378 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784509 intron ftz-f1 - chr3L_10_18780001 chr3L_18780001 RAL-439 1337 chr3L 18797293 18797335 chr3L 18797397 18797439 8 102 13.0 2.5 7.8 0.9 146 chr3L 18797293 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797439 intron ftz-f1 - chr3L_8_18795001 chr3L_18795001 RAL-439 1338 chr3L 18810144 18810153 chr3L 18810223 18810255 4 96 8.5 1.5 5.0 0.7 111 chr3L 18810144 intron CG14073 - chr3L 18810200 intron CG14073 - chr3L 18810255 intron CG14073 - chr3L_4_18810001 chr3L_18810001 RAL-439 1339 chr3L 18810154 18810178 chr3L 18810221 18810262 10 96 2.0 1.5 1.8 3.6 108 chr3L 18810154 intron CG14073 - chr3L 18810208 intron CG14073 - chr3L 18810262 intron CG14073 - chr3L_10_18810001 chr3L_18810001 RAL-439 1340 chr3L 18838731 18838750 chr3L 18838849 18838863 7 114 2.0 2.0 2.0 2.3 132 chr3L 18838731 intron Indy - chr3L 18838797 intron Indy - chr3L 18838863 intron Indy - chr3L_7_18835001 chr3L_18835001 RAL-439 1341 chr3L 18843855 18843881 chr3L 18843962 18843964 10 108 7.0 5.0 6.0 1.4 109 chr3L 18843855 intron Indy - chr3L 18843910 intron Indy - chr3L 18843964 intron Indy - chr3L_10_18840001 chr3L_18840001 RAL-439 1342 chr3L 18856994 18857021 chr3L 18857096 18857103 6 95 9.5 5.5 7.5 0.7 109 chr3L 18856994 5` UTR CR45388 + chr3L 18857048 5` UTR CR45388 + chr3L 18857103 5` UTR CR45388 + chr3L_6_18855001 chr3L_18855001 RAL-439 1343 chr3L 18924470 18924506 chr3L 18924556 18924602 7 92 2.0 3.5 2.8 1.8 132 chr3L 18924470 intron CG32204 - chr3L 18924536 intron CG32204 - chr3L 18924602 intron CG32204 - chr3L_7_18920001 chr3L_18920001 RAL-439 1344 chr3L 18933622 18933627 chr3L 18933726 18933741 4 108 16.5 6.5 11.5 0.3 119 chr3L 18933622 intron CG32204 - chr3L 18933682 intron CG32204 - chr3L 18933741 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-439 1345 chr3L 18933635 18933660 chr3L 18933724 18933774 18 105 4.5 6.5 5.5 2.8 139 chr3L 18933635 intron CG32204 - chr3L 18933704 intron CG32204 - chr3L 18933774 intron CG32204 - chr3L_18_18930001 chr3L_18930001 RAL-439 1346 chr3L 18957280 18957324 chr3L 18957374 18957375 13 87 1.0 1.5 1.2 5.9 95 chr3L 18957280 intergenic not near genes chr3L 18957328 intergenic not near genes chr3L 18957375 intergenic not near genes chr3L_13_18955001 chr3L_18955001 RAL-439 1347 chr3L 19029443 19029476 chr3L 19029552 19029583 5 104 1.5 2.5 2.0 1.7 140 chr3L 19029443 intron nkd - chr3L 19029513 intron nkd - chr3L 19029583 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-439 1348 chr3L 19117047 19117075 chr3L 19124497 19124514 mdg1 5 7454 3.5 2.5 3.0 1.2 7467 chr3L 19117047 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124514 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-439 1349 chr3L 19127361 19127394 chr3L 19127451 19127490 8 88 2.5 1.5 2.0 2.7 129 chr3L 19127361 intron CG14082 - chr3L 19127426 intron CG14082 - chr3L 19127490 intron CG14082 - chr3L_8_19125001 chr3L_19125001 RAL-439 1350 chr3L 19127729 19127761 chr3L 19127821 19127821 7 91 1.5 2.5 2.0 2.3 92 chr3L 19127729 intron CG14082 - chr3L 19127775 intron CG14082 - chr3L 19127821 intron CG14082 - chr3L_7_19125001 chr3L_19125001 RAL-439 1351 chr3L 19182367 19182417 chr3L 19182468 19182513 10 97 6.0 0.0 3.0 2.5 146 chr3L 19182367 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182513 intron fz2 - chr3L_10_19180001 chr3L_19180001 RAL-439 1352 chr3L 19189019 19189055 chr3L 19189148 19189178 5 122 3.0 0.0 1.5 2.0 159 chr3L 19189019 intron fz2 - chr3L 19189098 intron fz2 - chr3L 19189178 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-439 1353 chr3L 19210121 19210133 chr3L 19210210 19210234 4 101 0.0 0.5 0.2 3.3 113 chr3L 19210121 intron fz2 - chr3L 19210178 intron fz2 - chr3L 19210234 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-439 1354 chr3L 19217157 19217189 chr3L 19217231 19217236 9 82 2.0 3.5 2.8 2.4 79 chr3L 19217157 intron fz2 - chr3L 19217196 intron fz2 - chr3L 19217236 intron fz2 - chr3L_9_19215001 chr3L_19215001 RAL-439 1355 chr3L 19220633 19220636 chr3L 22908066 22908066 10 3687432 11.5 28.0 19.8 0.5 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-439 1356 chr3L 19253795 19253802 chr3L 19253892 19253894 6 95 11.5 11.0 11.2 0.5 99 chr3L 19253795 3` UTR mRpL21 - chr3L 19253844 3` UTR mRpL21 - chr3L 19253894 3` UTR mRpL21 - chr3L_6_19250001 chr3L_19250001 RAL-439 1357 chr3L 19253808 19253827 chr3L 19253890 19253924 9 91 7.0 11.0 9.0 0.9 116 chr3L 19253808 3` UTR mRpL21 - chr3L 19253866 3` UTR mRpL21 - chr3L 19253924 3` UTR mRpL21 - chr3L_9_19250001 chr3L_19250001 RAL-439 1358 chr3L 19253828 19253846 chr3L 19253889 19253936 11 89 6.5 10.5 8.5 1.2 108 chr3L 19253828 3` UTR mRpL21 - chr3L 19253882 3` UTR mRpL21 - chr3L 19253936 3` UTR mRpL21 - chr3L_11_19250001 chr3L_19250001 RAL-439 1359 chr3L 19295145 19295196 chr3L 19295509 19295558 10 361 0.5 2.0 1.2 4.5 413 chr3L 19295145 intron fal + chr3L 19295352 intron fal + chr3L 19295558 intron fal + chr3L_10_19295001 chr3L_19295001 RAL-439 1360 chr3L 19342743 19342769 chr3L 19342854 19342880 17 109 3.5 6.5 5.0 2.8 137 chr3L 19342743 3` UTR CG32206 - chr3L 19342812 3` UTR CG32206 - chr3L 19342880 3` UTR CG32206 - chr3L_17_19340001 chr3L_19340001 RAL-439 1361 chr3L 19430368 19430430 chr3L 19430474 19430503 21 86 0.0 3.5 1.8 7.5 135 chr3L 19430368 intergenic not near genes chr3L 19430436 intergenic not near genes chr3L 19430503 intergenic not near genes chr3L_21_19430001 chr3L_19430001 RAL-439 1362 chr3L 19439165 19439189 chr3L 19439264 19439282 8 96 7.5 6.0 6.8 1.0 117 chr3L 19439165 intergenic not near genes chr3L 19439224 intergenic not near genes chr3L 19439282 intergenic not near genes chr3L_8_19435001 chr3L_19435001 RAL-439 1363 chr3L 19439191 19439203 chr3L 19439260 19439302 7 95 3.5 5.5 4.5 1.3 111 chr3L 19439191 intergenic not near genes chr3L 19439246 intergenic not near genes chr3L 19439302 intergenic not near genes chr3L_7_19435001 chr3L_19435001 RAL-439 1364 chr3L 19554806 19554852 chr3L 19554911 19554945 7 96 4.0 4.5 4.2 1.3 139 chr3L 19554806 intergenic CG9300 + chr3L 19554876 intergenic CG9300 + chr3L 19554945 intergenic CG9300 + chr3L_7_19550001 chr3L_19550001 RAL-439 1365 chr3L 19644935 19644971 chr3L 19645047 19645098 17 122 5.5 6.5 6.0 2.4 163 chr3L 19644935 intergenic not near genes chr3L 19645016 intergenic not near genes chr3L 19645098 intergenic not near genes chr3L_17_19645001 chr3L_19645001 RAL-439 1366 chr3L 19820279 19820312 chr3L 19827848 19827861 412 13 7566 8.0 4.5 6.2 1.8 7582 chr3L 19820279 intron Deaf1 + chr3L 19824070 intron Deaf1 + chr3L 19827861 intron Deaf1 + chr3L_13_19820001 chr3L_19820001 RAL-439 1367 chr3L 19861818 19861852 chr3L 19863616 19863660 S-element 4 1800 2.5 3.0 2.8 1.1 1842 chr3L 19861818 5` UTR CR45433 + chr3L 19862739 intergenic not near genes chr3L 19863660 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-439 1368 chr3L 19930643 19930681 chr3L 19930746 19930784 8 98 4.5 8.5 6.5 1.1 141 chr3L 19930643 intron RhoGDI + chr3L 19930714 intron RhoGDI + chr3L 19930784 intron RhoGDI + chr3L_8_19930001 chr3L_19930001 RAL-439 1369 chr3L 19981195 19981235 chr3L 19981284 19981329 13 91 4.0 6.5 5.2 2.1 134 chr3L 19981195 intergenic CG17732 + chr3L 19981262 intergenic CG17732 + chr3L 19981329 intergenic CG17732 + chr3L_13_19980001 chr3L_19980001 RAL-439 1370 chr3L 20113458 20113508 chr3L 20113573 20113602 19 110 5.5 3.5 4.5 3.5 144 chr3L 20113458 intergenic not near genes chr3L 20113530 intergenic not near genes chr3L 20113602 intergenic not near genes chr3L_19_20110001 chr3L_20110001 RAL-439 1371 chr3L 20113651 20113664 chr3L 20122923 20122941 roo 4 9273 9.5 6.0 7.8 0.5 9290 chr3L 20113651 intergenic not near genes chr3L 20118296 intergenic not near genes chr3L 20122941 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-439 1372 chr3L 20143079 20143105 chr3L 20143171 20143195 11 95 4.5 9.0 6.8 1.4 116 chr3L 20143079 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143195 intergenic not near genes chr3L_11_20140001 chr3L_20140001 RAL-439 1373 chr3L 20143110 20143111 chr3L 20143169 20143201 4 80 4.0 9.0 6.5 0.5 91 chr3L 20143110 intergenic not near genes chr3L 20143156 intergenic not near genes chr3L 20143201 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-439 1374 chr3L 20187441 20187485 chr3L 20187540 20187567 12 94 33.5 26.5 30.0 0.4 126 chr3L 20187441 intron CG42674 - chr3L 20187504 intron CG42674 - chr3L 20187567 intron CG42674 - chr3L_12_20185001 chr3L_20185001 RAL-439 1375 chr3L 20257325 20257359 chr3L 20258465 20258499 pogo 5 1140 3.5 8.0 5.8 0.7 1174 chr3L 20257325 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258499 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-439 1376 chr3L 20266424 20266440 chr3L 20266555 20266571 5 133 16.0 12.5 14.2 0.3 147 chr3L 20266424 exon CG32228 + chr3L 20266498 exon CG32228 + chr3L 20266571 exon CG32228 + chr3L_5_20265001 chr3L_20265001 RAL-439 1377 chr3L 20345585 20345639 chr3L 20345686 20345692 8 90 7.0 4.0 5.5 1.2 107 chr3L 20345585 intergenic Rbbp5 - chr3L 20345638 intergenic Rbbp5 - chr3L 20345692 intergenic Rbbp5 - chr3L_8_20345001 chr3L_20345001 RAL-439 1378 chr3L 20386922 20386972 chr3L 20387042 20387094 14 119 1.5 2.0 1.8 5.0 172 chr3L 20386922 intron fbl + chr3L 20387008 intron fbl + chr3L 20387094 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-439 1379 chr3L 20476738 20476762 chr3L 20484357 20484381 springer 7 7619 13.0 5.5 9.2 0.7 7643 chr3L 20476738 3` UTR isoQC + chr3L 20480560 intergenic not near genes chr3L 20484381 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-439 1380 chr3L 20476771 20476782 chr3L 20484354 20484401 springer 5 7607 6.0 4.5 5.2 0.8 7630 chr3L 20476771 3` UTR isoQC + chr3L 20480586 intergenic not near genes chr3L 20484401 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-439 1381 chr3L 20525229 20525229 chr3L 22908066 22908067 4 2382838 5.0 28.0 16.5 0.2 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-439 1382 chr3L 20525229 20525229 chr3L 24821492 24821494 5 4296264 5.0 6.0 5.5 0.8 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-439 1383 chr3L 20710742 20710762 chr3L 20710838 20710849 6 94 8.5 3.5 6.0 0.9 107 chr3L 20710742 intergenic not near genes chr3L 20710796 intergenic not near genes chr3L 20710849 intergenic not near genes chr3L_6_20710001 chr3L_20710001 RAL-439 1384 chr3L 20710764 20710793 chr3L 20710833 20710877 10 88 6.5 4.0 5.2 1.6 113 chr3L 20710764 intergenic not near genes chr3L 20710820 intergenic not near genes chr3L 20710877 intergenic not near genes chr3L_10_20710001 chr3L_20710001 RAL-439 1385 chr3L 20739473 20739525 chr3L 20739608 20739637 12 133 1.0 5.0 3.0 3.0 164 chr3L 20739473 intron CG13252 + chr3L 20739555 intron CG13252 + chr3L 20739637 intron CG13252 + chr3L_12_20735001 chr3L_20735001 RAL-439 1386 chr3L 20781368 20781415 chr3L 20781474 20781481 14 96 4.0 3.5 3.8 2.9 113 chr3L 20781368 3` UTR CG11399 - chr3L 20781424 3` UTR CG11399 - chr3L 20781481 3` UTR CG11399 - chr3L_14_20780001 chr3L_20780001 RAL-439 1387 chr3L 20821266 20821309 chr3L 20824897 20824925 NOF 7 3625 5.5 1.5 3.5 1.6 3659 chr3L 20821266 intron Pka-R1 + chr3L 20823096 intron Pka-R1 + chr3L 20824925 intron Pka-R1 + chr3L_7_20820001 chr3L_20820001 RAL-439 1388 chr3L 20831480 20831496 chr3L 20831587 20831637 6 121 3.5 3.0 3.2 1.4 157 chr3L 20831480 intron Pka-R1 + chr3L 20831558 intron Pka-R1 + chr3L 20831637 intron Pka-R1 + chr3L_6_20830001 chr3L_20830001 RAL-439 1389 chr3L 20849250 20849301 chr3L 20849349 20849400 12 92 4.5 2.5 3.5 2.7 150 chr3L 20849250 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849400 intron CG32432 - chr3L_12_20845001 chr3L_20845001 RAL-439 1390 chr3L 21082188 21082238 chr3L 21082286 21082323 11 94 4.0 0.5 2.2 3.4 135 chr3L 21082188 intron ko - chr3L 21082256 intron ko - chr3L 21082323 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-439 1391 chr3L 21130558 21130595 chr3L 21130762 21130798 15 209 4.5 4.5 4.5 2.7 240 chr3L 21130558 intron ko - chr3L 21130678 intron ko - chr3L 21130798 intron ko - chr3L_15_21130001 chr3L_21130001 RAL-439 1392 chr3L 21151854 21151894 chr3L 21156947 21156998 flea 20 5096 4.5 2.0 3.2 4.8 5144 chr3L 21151854 intron Ac78C - chr3L 21154426 intron Ac78C - chr3L 21156998 intron Ac78C - chr3L_20_21150001 chr3L_21150001 RAL-439 1393 chr3L 21306131 21306179 chr3L 21315310 21315358 roo 17 9172 5.5 4.0 4.8 2.9 9227 chr3L 21306131 3` UTR CG7632 + chr3L 21310744 intron Pc - chr3L 21315358 3` UTR Pc - chr3L_17_21310001 chr3L_21310001 RAL-439 1394 chr3L 21372711 21372753 chr3L 21379228 21379280 McClintock 9 6525 4.0 2.5 3.2 2.1 6569 chr3L 21372711 intergenic not near genes chr3L 21375996 intergenic not near genes chr3L 21379280 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-439 1395 chr3L 21415140 21415148 chr3L 21415230 21415251 4 97 3.0 5.0 4.0 0.8 111 chr3L 21415140 intron rgn + chr3L 21415196 intron rgn + chr3L 21415251 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-439 1396 chr3L 21415152 21415163 chr3L 21415224 21415266 5 93 2.5 4.5 3.5 1.1 114 chr3L 21415152 intron rgn + chr3L 21415209 intron rgn + chr3L 21415266 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-439 1397 chr3L 21769033 21769087 chr3L 21769140 21769194 20 101 5.5 4.5 5.0 3.3 161 chr3L 21769033 intron,intron Syn1 -,CG42689 + chr3L 21769114 intron,intron Syn1 -,CG42689 + chr3L 21769194 intron,intron Syn1 -,CG42689 + chr3L_20_21765001 chr3L_21765001 RAL-439 1398 chr3L 21776676 21776703 chr3L 21776763 21776810 8 101 2.0 6.0 4.0 1.6 134 chr3L 21776676 intron,intron CG42689 +,CG42552 + chr3L 21776743 intron,intron CG42689 +,CG42552 + chr3L 21776810 intron,intron CG42689 +,CG42552 + chr3L_8_21775001 chr3L_21775001 RAL-439 1399 chr3L 21836710 21836750 chr3L 21836816 21836856 11 101 9.0 8.5 8.8 1.1 146 chr3L 21836710 3` UTR P5CDh1 - chr3L 21836783 3` UTR P5CDh1 - chr3L 21836856 3` UTR P5CDh1 - chr3L_11_21835001 chr3L_21835001 RAL-439 1400 chr3L 21849480 21849506 chr3L 21849582 21849600 9 96 5.0 3.5 4.2 1.7 120 chr3L 21849480 intron mub + chr3L 21849540 intron mub + chr3L 21849600 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-439 1401 chr3L 21849518 21849532 chr3L 21849580 21849634 9 96 3.5 3.5 3.5 2.0 116 chr3L 21849518 intron mub + chr3L 21849576 intron mub + chr3L 21849634 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-439 1402 chr3L 21874977 21875027 chr3L 21875154 21875197 22 171 5.0 8.5 6.8 2.8 220 chr3L 21874977 intron mub + chr3L 21875087 intron mub + chr3L 21875197 intron mub + chr3L_22_21875001 chr3L_21875001 RAL-439 1403 chr3L 21952448 21952466 chr3L 21953205 21953214 transib1 5 756 9.5 3.0 6.2 0.7 766 chr3L 21952448 intergenic not near genes chr3L 21952831 intergenic not near genes chr3L 21953214 intergenic not near genes chr3L_5_21950001 chr3L_21950001 RAL-439 1404 chr3L 21952467 21952481 chr3L 21953195 21953202 transib1 4 742 6.5 2.5 4.5 0.7 735 chr3L 21952467 intergenic not near genes chr3L 21952834 intergenic not near genes chr3L 21953202 intergenic not near genes chr3L_4_21950001 chr3L_21950001 RAL-439 1405 chr3L 22016348 22016373 chr3L 22016484 22016491 4 131 8.5 3.0 5.8 0.6 143 chr3L 22016348 intergenic not near genes chr3L 22016420 intergenic not near genes chr3L 22016491 intergenic not near genes chr3L_4_22015001 chr3L_22015001 RAL-439 1406 chr3L 22033689 22033716 chr3L 22033767 22033814 10 93 5.0 2.5 3.8 2.1 125 chr3L 22033689 intergenic not near genes chr3L 22033752 intergenic not near genes chr3L 22033814 intergenic not near genes chr3L_10_22030001 chr3L_22030001 RAL-439 1407 chr3L 22046183 22046214 chr3L 22046286 22046327 11 115 6.5 4.0 5.2 1.8 144 chr3L 22046183 intron Oct-TyrR + chr3L 22046255 intron Oct-TyrR + chr3L 22046327 intron Oct-TyrR + chr3L_11_22045001 chr3L_22045001 RAL-439 1408 chr3L 22099656 22099682 chr3L 22105862 22105888 3S18 13 6202 8.5 5.5 7.0 1.6 6232 chr3L 22099656 intergenic not near genes chr3L 22102772 intergenic not near genes chr3L 22105888 intergenic not near genes chr3L_13_22100001 chr3L_22100001 RAL-439 1409 chr3L 22099685 22099705 chr3L 22105861 22105911 3S18 10 6196 3.0 5.5 4.2 1.9 6226 chr3L 22099685 intergenic not near genes chr3L 22102798 intergenic not near genes chr3L 22105911 intergenic not near genes chr3L_10_22100001 chr3L_22100001 RAL-439 1410 chr3L 22124932 22124982 chr3L 22125103 22125137 12 169 3.5 3.0 3.2 2.9 205 chr3L 22124932 intergenic not near genes chr3L 22125034 intergenic not near genes chr3L 22125137 intergenic not near genes chr3L_12_22125001 chr3L_22125001 RAL-439 1411 chr3L 22130490 22130519 chr3L 22130646 22130685 9 163 5.5 2.0 3.8 1.9 195 chr3L 22130490 intergenic not near genes chr3L 22130588 intergenic not near genes chr3L 22130685 intergenic not near genes chr3L_9_22130001 chr3L_22130001 RAL-439 1412 chr3L 22361951 22361971 chr3L 22362027 22362068 8 91 5.0 3.5 4.2 1.5 117 chr3L 22361951 intron Ten-m - chr3L 22362010 intron Ten-m - chr3L 22362068 intron Ten-m - chr3L_8_22360001 chr3L_22360001 RAL-439 1413 chr3L 22522680 22522726 chr3L 22522777 22522810 10 95 5.0 0.5 2.8 2.6 130 chr3L 22522680 intergenic not near genes chr3L 22522745 intergenic not near genes chr3L 22522810 intergenic not near genes chr3L_10_22520001 chr3L_22520001 RAL-439 1414 chr3L 22555764 22555799 chr3L 22563244 22563268 blood 6 7474 4.0 1.0 2.5 1.7 7504 chr3L 22555764 intergenic not near genes chr3L 22559516 intergenic not near genes chr3L 22563268 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-439 1415 chr3L 22577620 22577648 chr3L 22582428 22582436 Doc 4 4794 0.0 5.0 2.5 1.1 4816 chr3L 22577620 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-439 1416 chr3L 22587195 22587216 chr3L 22587312 22587333 8 116 12.0 4.5 8.2 0.9 138 chr3L 22587195 intron CG14459 - chr3L 22587264 intron CG14459 - chr3L 22587333 intron CG14459 - chr3L_8_22585001 chr3L_22585001 RAL-439 1417 chr3L 22587217 22587246 chr3L 22587309 22587363 19 109 2.5 4.0 3.2 4.5 146 chr3L 22587217 intron CG14459 - chr3L 22587290 intron CG14459 - chr3L 22587363 intron CG14459 - chr3L_19_22585001 chr3L_22585001 RAL-439 1418 chr3L 22617175 22617213 chr3L 22624647 22624669 blood 9 7468 1.5 3.5 2.5 2.6 7494 chr3L 22617175 intron CG14459 - chr3L 22620922 intron CG14459 - chr3L 22624669 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-439 1419 chr3L 22617217 22617220 chr3L 22624644 22624691 blood 4 7450 1.5 3.5 2.5 1.1 7474 chr3L 22617217 intron CG14459 - chr3L 22620954 intron CG14459 - chr3L 22624691 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-439 1420 chr3L 22797315 22797332 chr3L 22797428 22797439 5 109 14.0 2.0 8.0 0.6 124 chr3L 22797315 3` UTR jim - chr3L 22797377 3` UTR jim - chr3L 22797439 3` UTR jim - chr3L_5_22795001 chr3L_22795001 RAL-439 1421 chr3L 22797345 22797364 chr3L 22797424 22797444 6 84 6.5 2.0 4.2 1.2 99 chr3L 22797345 3` UTR jim - chr3L 22797394 3` UTR jim - chr3L 22797444 3` UTR jim - chr3L_6_22795001 chr3L_22795001 RAL-439 1422 chr3L 22853443 22853721 chr3L 22853550 22853801 28 97 0.5 2.5 1.5 11.2 358 chr3L 22853443 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853622 5` UTR CR43426 + chr3L 22853801 5` UTR CR43426 + chr3L_28_22850001 chr3L_22850001 RAL-439 1423 chr3L 22865977 22866004 chr3L 22867120 22867137 Doc 12 1144 7.5 6.0 6.8 1.5 1160 chr3L 22865977 intron CG33170 + chr3L 22866557 intron CG33170 + chr3L 22867137 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-439 1424 chr3L 20525228 20525230 chr3L 22908066 22908066 5 2382837 5.0 28.0 16.5 0.3 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-439 1425 chr3L 22980568 22980598 chr3L 22980673 22980688 9 92 2.0 1.5 1.8 3.2 120 chr3L 22980568 intergenic not near genes chr3L 22980628 intergenic not near genes chr3L 22980688 intergenic not near genes chr3L_9_22980001 chr3L_22980001 RAL-439 1426 chr3L 22982469 22982483 chr3L 22982877 22982901 INE-1 7 416 5.0 6.0 5.5 1.1 432 chr3L 22982469 intergenic not near genes chr3L 22982685 intergenic not near genes chr3L 22982901 intergenic not near genes chr3L_7_22980001 chr3L_22980001 RAL-439 1427 chr3L 22989847 22989887 chr3L 22996840 22996864 297 8 6984 3.5 5.0 4.2 1.5 7017 chr3L 22989847 intergenic not near genes chr3L 22993356 intergenic not near genes chr3L 22996864 intergenic not near genes chr3L_8_22990001 chr3L_22990001 RAL-439 1428 chr3L 23008183 23008198 chr3L 23008279 23008294 5 96 13.0 1.0 7.0 0.6 111 chr3L 23008183 intron nrm + chr3L 23008238 intron nrm + chr3L 23008294 intron nrm + chr3L_5_23005001 chr3L_23005001 RAL-439 1429 chr3L 23008202 23008232 chr3L 23008274 23008293 9 85 5.5 2.0 3.8 1.9 91 chr3L 23008202 intron nrm + chr3L 23008248 intron nrm + chr3L 23008293 intron nrm + chr3L_9_23005001 chr3L_23005001 RAL-439 1430 chr3L 23042225 23042257 chr3L 23048978 23049030 gypsy6 6 6755 3.0 4.5 3.8 1.2 6805 chr3L 23042225 intergenic not near genes chr3L 23045628 intergenic not near genes chr3L 23049030 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-439 1431 chr3L 23062874 23062885 chr3L 25074004 25074010 Tirant 7 2011129 11.5 17.0 14.2 0.5 2011136 chr3L 23062874 intergenic not near genes chr3L 24068442 intergenic not near genes chr3L 25074010 intergenic not near genes chr3L_7_24065001 chr3L_24065001 RAL-439 1432 chr3L 23101262 23101299 chr3L 23101493 23101526 7 227 7.5 2.0 4.8 1.2 264 chr3L 23101262 intron CkIIalpha + chr3L 23101394 intron CkIIalpha + chr3L 23101526 intron CkIIalpha + chr3L_7_23100001 chr3L_23100001 RAL-439 1433 chr3L 23182256 23182287 chr3L 23182375 23182411 5 119 6.5 1.0 3.8 1.0 155 chr3L 23182256 intron CG34031 + chr3L 23182334 intron CG34031 + chr3L 23182411 intron CG34031 + chr3L_5_23180001 chr3L_23180001 RAL-439 1434 chr3L 23402314 23402324 chr3L 23402387 23402405 5 82 1.5 1.0 1.2 2.3 91 chr3L 23402314 intergenic not near genes chr3L 23402360 intergenic not near genes chr3L 23402405 intergenic not near genes chr3L_5_23400001 chr3L_23400001 RAL-439 1435 chr3L 24791901 24791916 chr3L 24796678 24796713 Doc 4 4790 4.0 4.0 4.0 0.8 4812 chr3L 24791901 intergenic not near genes chr3L 24794307 intergenic not near genes chr3L 24796713 intergenic not near genes chr3L_4_24790001 chr3L_24790001 RAL-439 1436 chr3L 18198930 18198931 chr3L 24821492 24821492 4 6622562 0.5 6.0 3.2 1.0 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-439 1437 chr3L 18198930 18198931 chr3L 24821493 24821493 9 6622562 0.5 6.0 3.2 2.1 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_9_21510001 chr3L_21510001 RAL-439 1438 chr3L 25354060 25354075 chr3L 25354236 25354256 6 182 1.0 2.5 1.8 2.1 196 chr3L 25354060 intergenic not near genes chr3L 25354158 intergenic not near genes chr3L 25354256 intergenic not near genes chr3L_6_25350001 chr3L_25350001 RAL-439 1439 chr3L 26695938 26695942 chr3L 26697293 26697303 4 1337 14.5 12.5 13.5 0.3 1365 chr3L 26695938 intergenic not near genes chr3L 26696620 intergenic not near genes chr3L 26697303 intergenic not near genes chr3L_4_26695001 chr3L_26695001 RAL-439 1440 chr3L 26720991 26721013 chr3L 26722317 26722365 INE-1 8 1351 15.0 17.5 16.2 0.5 1374 chr3L 26720991 intergenic not near genes chr3L 26721678 intergenic not near genes chr3L 26722365 intergenic not near genes chr3L_8_26720001 chr3L_26720001 RAL-439 1441 chr3L 27383181 27383209 chr3L 27383334 27383374 4 162 37.0 39.0 38.0 0.1 193 chr3L 27383181 intron Dbp80 + chr3L 27383278 intron Dbp80 + chr3L 27383374 intron Dbp80 + chr3L_4_27380001 chr3L_27380001 RAL-439 1442 chr3L 28005572 28005603 chr3L 28005649 28005690 11 87 8.5 4.5 6.5 1.5 118 chr3L 28005572 intron CG17514 - chr3L 28005631 intron CG17514 - chr3L 28005690 intron CG17514 - chr3L_11_28005001 chr3L_28005001 RAL-439 1443 chr3R 97110 97111 chr3R 99846 99847 5 2736 9.5 13.0 11.2 0.4 2737 chr3R 97110 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99847 intergenic not near genes chr3R_5_95001 chr3R_95001 RAL-439 1444 chr3R 97107 97113 chr3R 99848 99849 5 2737 10.0 13.0 11.5 0.4 2742 chr3R 97107 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_5_95001 chr3R_95001 RAL-439 1445 chr3R 2556882 2556910 chr3R 2557621 2557640 5 724 24.5 21.5 23.0 0.2 758 chr3R 2556882 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557640 intron CG41056 - chr3R_5_2555001 chr3R_2555001 RAL-439 1446 chr3R 4105028 4105064 chr3R 4110252 4110264 copia 6 5218 1.5 1.5 1.5 2.4 5236 chr3R 4105028 intergenic not near genes chr3R 4107646 intergenic not near genes chr3R 4110264 intergenic not near genes chr3R_6_4105001 chr3R_4105001 RAL-439 1447 chr3R 4132880 4132925 chr3R 4133054 4133076 11 167 3.0 2.5 2.8 2.9 196 chr3R 4132880 intron Gfat1 + chr3R 4132978 intron Gfat1 + chr3R 4133076 intron Gfat1 + chr3R_11_4130001 chr3R_4130001 RAL-439 1448 chr3R 4206079 4206102 chr3R 4211653 4211681 mdg3 8 5576 4.5 4.0 4.2 1.5 5602 chr3R 4206079 intron CG14636 - chr3R 4208880 intron CG14636 - chr3R 4211681 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-439 1449 chr3R 4366740 4366756 chr3R 4375143 4375159 roo 6 8402 16.0 4.0 10.0 0.5 8419 chr3R 4366740 3` UTR CG1090 + chr3R 4370950 intergenic not near genes chr3R 4375159 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-439 1450 chr3R 4366757 4366773 chr3R 4375140 4375176 roo 6 8395 12.5 4.0 8.2 0.7 8419 chr3R 4366757 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375176 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-439 1451 chr3R 4366774 4366787 chr3R 4375139 4375180 roo 4 8390 7.5 4.0 5.8 0.6 8406 chr3R 4366774 3` UTR CG1090 + chr3R 4370977 intergenic not near genes chr3R 4375180 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-439 1452 chr3R 4408426 4408439 chr3R 4412709 4412753 Juan 5 4304 3.5 7.0 5.2 0.8 4327 chr3R 4408426 intron CG32944 - chr3R 4410590 intron CG32944 - chr3R 4412753 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-439 1453 chr3R 4609530 4609581 chr3R 4610714 4610755 1360 16 1176 6.5 7.5 7.0 2.0 1225 chr3R 4609530 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610755 intergenic not near genes chr3R_16_4610001 chr3R_4610001 RAL-439 1454 chr3R 4680697 4680702 chr3R 4680795 4680797 5 97 9.0 6.5 7.8 0.6 100 chr3R 4680697 intron CG43427 + chr3R 4680747 intron CG43427 + chr3R 4680797 5` UTR CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-439 1455 chr3R 4680703 4680739 chr3R 4680787 4680838 10 93 4.5 6.0 5.2 1.6 135 chr3R 4680703 intron CG43427 + chr3R 4680770 intron CG43427 + chr3R 4680838 intron CG43427 + chr3R_10_4680001 chr3R_4680001 RAL-439 1456 chr3R 4753224 4753268 chr3R 4757547 4757559 F-element 10 4317 7.5 1.0 4.2 1.9 4335 chr3R 4753224 intron,intron atms +,CG44098 - chr3R 4755392 intron,intron atms +,CG44098 - chr3R 4757559 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-439 1457 chr3R 4769140 4769186 chr3R 4769238 4769284 10 92 3.5 2.0 2.8 2.6 144 chr3R 4769140 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769284 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-439 1458 chr3R 4922352 4922362 chr3R 4922429 4922458 4 86 3.0 3.0 3.0 1.0 106 chr3R 4922352 intron Cdep + chr3R 4922405 intron Cdep + chr3R 4922458 intron Cdep + chr3R_4_4920001 chr3R_4920001 RAL-439 1459 chr3R 4948368 4948391 chr3R 4949002 4949033 5 640 36.0 23.0 29.5 0.2 665 chr3R 4948368 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948700 intergenic UbcD6 - chr3R 4949033 3` UTR UbcD6 - chr3R_5_4945001 chr3R_4945001 RAL-439 1460 chr3R 4965991 4966035 chr3R 4966103 4966147 6 112 3.0 5.0 4.0 1.2 156 chr3R 4965991 intron CG1124 + chr3R 4966069 intron CG1124 + chr3R 4966147 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-439 1461 chr3R 5045826 5045876 chr3R 5052948 5052973 HMS-Beagle 17 7119 10.0 4.5 7.2 2.1 7147 chr3R 5045826 3` UTR CR43635 - chr3R 5049400 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_17_5045001 chr3R_5045001 RAL-439 1462 chr3R 5067972 5068003 chr3R 5073509 5073540 mdg3 10 5536 6.5 11.0 8.8 1.0 5568 chr3R 5067972 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073540 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-439 1463 chr3R 5068005 5068013 chr3R 5073507 5073535 mdg3 5 5521 4.5 11.0 7.8 0.6 5530 chr3R 5068005 intergenic not near genes chr3R 5070770 intergenic not near genes chr3R 5073535 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-439 1464 chr3R 5158124 5158176 chr3R 5158237 5158282 7 111 8.5 2.0 5.2 1.1 158 chr3R 5158124 intron dpr16 + chr3R 5158203 intron dpr16 + chr3R 5158282 intron dpr16 + chr3R_7_5155001 chr3R_5155001 RAL-439 1465 chr3R 5191366 5191366 chr3R 5191622 5191672 6 277 9.5 23.5 16.5 0.3 306 chr3R 5191366 intron cno - chr3R 5191519 intron cno - chr3R 5191672 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-439 1466 chr3R 5338384 5338401 chr3R 5343580 5343598 Rt1c 4 5190 12.5 6.0 9.2 0.4 5214 chr3R 5338384 intron mtd - chr3R 5340991 intron mtd - chr3R 5343598 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-439 1467 chr3R 5397297 5397338 chr3R 5397396 5397437 12 96 7.5 5.5 6.5 1.6 140 chr3R 5397297 3` UTR CG1172 + chr3R 5397367 3` UTR CG1172 + chr3R 5397437 3` UTR CG1172 + chr3R_12_5395001 chr3R_5395001 RAL-439 1468 chr3R 5422824 5422831 chr3R 5423155 5423169 5 337 1.5 9.5 5.5 0.8 345 chr3R 5422824 intron CG14669 + chr3R 5422996 intron CG14669 + chr3R 5423169 intron CG14669 + chr3R_5_5420001 chr3R_5420001 RAL-439 1469 chr3R 5445947 5445993 chr3R 5452420 5452442 Burdock 14 6475 3.5 2.5 3.0 3.5 6495 chr3R 5445947 intron CG14669 + chr3R 5449194 intron CG14669 + chr3R 5452442 intron CG14669 + chr3R_14_5445001 chr3R_5445001 RAL-439 1470 chr3R 5578783 5578818 chr3R 5578875 5578915 11 94 10.5 2.5 6.5 1.5 132 chr3R 5578783 3` UTR CRMP + chr3R 5578849 3` UTR CRMP + chr3R 5578915 3` UTR CRMP + chr3R_11_5575001 chr3R_5575001 RAL-439 1471 chr3R 5712065 5712103 chr3R 5712173 5712191 7 105 4.5 4.5 4.5 1.3 126 chr3R 5712065 3` UTR plx + chr3R 5712128 3` UTR plx + chr3R 5712191 3` UTR plx + chr3R_7_5710001 chr3R_5710001 RAL-439 1472 chr3R 5745996 5746040 chr3R 5746257 5746263 pogo 12 251 2.5 5.0 3.8 2.5 267 chr3R 5745996 3` UTR Madm + chr3R 5746130 3` UTR Madm + chr3R 5746263 3` UTR Madm + chr3R_12_5745001 chr3R_5745001 RAL-439 1473 chr3R 5746996 5747005 chr3R 5753207 5753216 diver 5 6210 13.0 7.0 10.0 0.5 6220 chr3R 5746996 intergenic Madm + chr3R 5750106 intergenic not near genes chr3R 5753216 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-439 1474 chr3R 5747006 5747042 chr3R 5753202 5753253 diver 15 6204 8.0 4.5 6.2 2.1 6247 chr3R 5747006 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753253 intergenic CG2091 - chr3R_15_5750001 chr3R_5750001 RAL-439 1475 chr3R 5772355 5772409 chr3R 5772533 5772587 24 172 3.0 4.0 3.5 5.3 232 chr3R 5772355 intron CG2082 - chr3R 5772471 intron CG2082 - chr3R 5772587 intron CG2082 - chr3R_24_5770001 chr3R_5770001 RAL-439 1476 chr3R 5809094 5809129 chr3R 5809355 5809385 pogo 6 256 6.0 8.5 7.2 0.7 291 chr3R 5809094 3` UTR CG11000 + chr3R 5809240 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-439 1477 chr3R 5822367 5822404 chr3R 5823554 5823591 1360 10 1185 5.5 6.5 6.0 1.4 1224 chr3R 5822367 3` UTR CG2023 - chr3R 5822979 3` UTR CG2023 - chr3R 5823591 3` UTR CG2023 - chr3R_10_5820001 chr3R_5820001 RAL-439 1478 chr3R 5846865 5846874 chr3R 5846961 5846970 4 96 13.0 4.5 8.8 0.4 105 chr3R 5846865 intergenic CG1213 +,CG14676 + chr3R 5846918 intergenic CG14676 +,CG1213 + chr3R 5846970 intergenic CG14676 +,CG1213 + chr3R_4_5845001 chr3R_5845001 RAL-439 1479 chr3R 5846882 5846907 chr3R 5846950 5847003 7 85 6.0 5.0 5.5 1.1 121 chr3R 5846882 intergenic CG1213 +,CG14676 + chr3R 5846942 intergenic CG14676 +,CG1213 + chr3R 5847003 intergenic CG14676 +,CG1213 + chr3R_7_5845001 chr3R_5845001 RAL-439 1480 chr3R 5880772 5880810 chr3R 5881138 5881171 5 361 2.0 4.5 3.2 1.2 399 chr3R 5880772 intron CG34113 - chr3R 5880972 intron CG34113 - chr3R 5881171 intron CG34113 - chr3R_5_5880001 chr3R_5880001 RAL-439 1481 chr3R 5895940 5895989 chr3R 5896169 5896223 10 229 0.5 1.5 1.0 5.0 283 chr3R 5895940 intron CG34113 - chr3R 5896082 intron CG34113 - chr3R 5896223 intron CG34113 - chr3R_10_5895001 chr3R_5895001 RAL-439 1482 chr3R 5927560 5927587 chr3R 5927810 5927827 pogo 8 252 2.5 3.5 3.0 2.0 267 chr3R 5927560 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927827 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-439 1483 chr3R 5935341 5935393 chr3R 5935437 5935489 21 86 3.5 2.0 2.8 5.5 148 chr3R 5935341 intron CG34113 - chr3R 5935415 intron CG34113 - chr3R 5935489 intron CG34113 - chr3R_21_5935001 chr3R_5935001 RAL-439 1484 chr3R 5988895 5988929 chr3R 5989106 5989148 6 218 3.5 1.0 2.2 1.9 253 chr3R 5988895 intergenic CR44927 + chr3R 5989022 intergenic CR44927 + chr3R 5989148 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-439 1485 chr3R 6104335 6104377 chr3R 6104475 6104509 10 132 6.0 4.0 5.0 1.7 174 chr3R 6104335 intron CR44929 - chr3R 6104422 intron CR44929 - chr3R 6104509 intron CR44929 - chr3R_10_6100001 chr3R_6100001 RAL-439 1486 chr3R 6158492 6158540 chr3R 6167095 6167143 Tirant 8 8593 2.5 1.0 1.8 2.9 8651 chr3R 6158492 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167143 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-439 1487 chr3R 6175151 6175202 chr3R 6182443 6182469 HMS-Beagle2 14 7285 3.0 2.5 2.8 3.7 7318 chr3R 6175151 intergenic Osi1 + chr3R 6178810 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_14_6175001 chr3R_6175001 RAL-439 1488 chr3R 6194959 6194973 chr3R 6195029 6195073 6 86 3.0 4.0 3.5 1.3 114 chr3R 6194959 3` UTR NPFR + chr3R 6195016 3` UTR NPFR + chr3R 6195073 3` UTR NPFR + chr3R_6_6195001 chr3R_6195001 RAL-439 1489 chr3R 6199211 6199233 chr3R 6201026 6201060 4 1823 12.5 41.5 27.0 0.1 1849 chr3R 6199211 5` UTR Osi24 + chr3R 6200136 intron Osi24 + chr3R 6201060 intron Osi24 + chr3R_4_6200001 chr3R_6200001 RAL-439 1490 chr3R 6415205 6415250 chr3R 6415321 6415366 13 110 1.5 2.5 2.0 4.3 161 chr3R 6415205 intron gpp + chr3R 6415286 intron gpp + chr3R 6415366 intron gpp + chr3R_13_6415001 chr3R_6415001 RAL-439 1491 chr3R 6461556 6461611 chr3R 6461657 6461706 7 90 3.0 3.5 3.2 1.7 150 chr3R 6461556 intergenic not near genes chr3R 6461631 intergenic not near genes chr3R 6461706 intergenic not near genes chr3R_7_6460001 chr3R_6460001 RAL-439 1492 chr3R 6482726 6482763 chr3R 6483479 6483494 6 746 0.5 0.5 0.5 4.0 768 chr3R 6482726 intron CG15186 + chr3R 6483110 intron CG15186 + chr3R 6483494 intron CG15186 + chr3R_6_6480001 chr3R_6480001 RAL-439 1493 chr3R 6510012 6510051 chr3R 6515113 6515146 jockey 10 5097 3.5 2.5 3.0 2.5 5134 chr3R 6510012 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515146 intergenic not near genes chr3R_10_6510001 chr3R_6510001 RAL-439 1494 chr3R 6526341 6526372 chr3R 6526553 6526584 8 211 3.0 8.5 5.8 1.2 243 chr3R 6526341 intergenic not near genes chr3R 6526462 intergenic not near genes chr3R 6526584 intergenic not near genes chr3R_8_6525001 chr3R_6525001 RAL-439 1495 chr3R 6624238 6624285 chr3R 6624340 6624383 16 99 6.0 4.5 5.2 2.6 145 chr3R 6624238 intergenic not near genes chr3R 6624310 intergenic not near genes chr3R 6624383 intergenic not near genes chr3R_16_6620001 chr3R_6620001 RAL-439 1496 chr3R 6737515 6737528 chr3R 6739297 6739335 Doc 4 1796 1.0 1.5 1.2 1.8 1820 chr3R 6737515 intron pb - chr3R 6738425 intron pb - chr3R 6739335 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-439 1497 chr3R 6856374 6856397 chr3R 6856501 6856534 11 132 5.0 4.5 4.8 1.9 160 chr3R 6856374 intergenic not near genes chr3R 6856454 intergenic not near genes chr3R 6856534 intergenic not near genes chr3R_11_6855001 chr3R_6855001 RAL-439 1498 chr3R 6862208 6862230 chr3R 6862315 6862327 6 104 4.0 9.0 6.5 0.8 119 chr3R 6862208 intergenic not near genes chr3R 6862268 intergenic not near genes chr3R 6862327 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-439 1499 chr3R 6862232 6862251 chr3R 6862309 6862358 9 96 1.5 7.5 4.5 1.6 126 chr3R 6862232 intergenic not near genes chr3R 6862295 intergenic not near genes chr3R 6862358 intergenic not near genes chr3R_9_6860001 chr3R_6860001 RAL-439 1500 chr3R 7036751 7036786 chr3R 7036850 7036861 16 92 9.5 6.0 7.8 1.8 110 chr3R 7036751 intergenic not near genes chr3R 7036806 intergenic not near genes chr3R 7036861 intergenic not near genes chr3R_16_7035001 chr3R_7035001 RAL-439 1501 chr3R 7103299 7103314 chr3R 7103363 7103364 5 77 4.0 4.0 4.0 1.0 65 chr3R 7103299 intron Alh - chr3R 7103332 intron Alh - chr3R 7103364 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-439 1502 chr3R 7126489 7126533 chr3R 7126604 7126648 18 109 10.0 7.5 8.8 1.8 159 chr3R 7126489 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126648 3` UTR CG10068 - chr3R_18_7125001 chr3R_7125001 RAL-439 1503 chr3R 7173666 7173710 chr3R 7173764 7173790 17 93 3.5 8.0 5.8 2.5 124 chr3R 7173666 intron sas + chr3R 7173728 intron sas + chr3R 7173790 intron sas + chr3R_17_7170001 chr3R_7170001 RAL-439 1504 chr3R 7187722 7187743 chr3R 7187830 7187851 7 108 7.5 6.0 6.8 0.9 129 chr3R 7187722 intron lap + chr3R 7187786 intron lap + chr3R 7187851 intron lap + chr3R_7_7185001 chr3R_7185001 RAL-439 1505 chr3R 7281029 7281074 chr3R 7281141 7281148 11 102 2.0 1.0 1.5 4.4 119 chr3R 7281029 intron rn - chr3R 7281088 intron rn - chr3R 7281148 intron rn - chr3R_11_7280001 chr3R_7280001 RAL-439 1506 chr3R 7356195 7356246 chr3R 7356308 7356359 11 107 5.5 1.0 3.2 2.6 164 chr3R 7356195 intergenic not near genes chr3R 7356277 intergenic not near genes chr3R 7356359 intergenic not near genes chr3R_11_7355001 chr3R_7355001 RAL-439 1507 chr3R 7371024 7371065 chr3R 7371337 7371373 8 308 5.5 4.0 4.8 1.4 349 chr3R 7371024 intergenic not near genes chr3R 7371198 intergenic not near genes chr3R 7371373 intergenic not near genes chr3R_8_7370001 chr3R_7370001 RAL-439 1508 chr3R 7410606 7410615 chr3R 7410688 7410717 6 96 2.5 4.5 3.5 1.3 111 chr3R 7410606 intergenic not near genes chr3R 7410662 intergenic not near genes chr3R 7410717 intergenic not near genes chr3R_6_7410001 chr3R_7410001 RAL-439 1509 chr3R 7428705 7428752 chr3R 7428892 7428898 10 188 2.5 5.0 3.8 2.1 193 chr3R 7428705 intergenic not near genes chr3R 7428802 intergenic not near genes chr3R 7428898 intergenic not near genes chr3R_10_7425001 chr3R_7425001 RAL-439 1510 chr3R 7447990 7447999 chr3R 7448076 7448094 7 94 8.0 7.5 7.8 0.8 104 chr3R 7447990 intergenic not near genes chr3R 7448042 intergenic not near genes chr3R 7448094 intergenic not near genes chr3R_7_7445001 chr3R_7445001 RAL-439 1511 chr3R 7448001 7448010 chr3R 7448069 7448108 6 85 4.5 6.5 5.5 0.9 107 chr3R 7448001 intergenic not near genes chr3R 7448054 intergenic not near genes chr3R 7448108 intergenic not near genes chr3R_6_7445001 chr3R_7445001 RAL-439 1512 chr3R 7542448 7542457 chr3R 7542546 7542555 5 98 9.0 0.0 4.5 0.9 107 chr3R 7542448 intron alpha-Est2 + chr3R 7542502 intron alpha-Est2 + chr3R 7542555 intron alpha-Est2 + chr3R_5_7540001 chr3R_7540001 RAL-439 1513 chr3R 7548594 7548635 chr3R 7548680 7548729 18 87 3.0 1.0 2.0 6.0 135 chr3R 7548594 intron alpha-Est1 - chr3R 7548662 intron alpha-Est1 - chr3R 7548729 intron alpha-Est1 - chr3R_18_7545001 chr3R_7545001 RAL-439 1514 chr3R 7621551 7621561 chr3R 7621624 7621671 5 92 2.5 1.5 2.0 1.7 120 chr3R 7621551 intron CG34127 - chr3R 7621611 intron CG34127 - chr3R 7621671 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-439 1515 chr3R 7655006 7655037 chr3R 7655087 7655134 5 86 4.5 1.5 3.0 1.2 128 chr3R 7655006 intergenic not near genes chr3R 7655070 intergenic not near genes chr3R 7655134 intergenic not near genes chr3R_5_7655001 chr3R_7655001 RAL-439 1516 chr3R 7677902 7677945 chr3R 7678035 7678078 10 125 3.0 3.5 3.2 2.4 176 chr3R 7677902 intron Nlg1 + chr3R 7677990 intron Nlg1 + chr3R 7678078 intron Nlg1 + chr3R_10_7675001 chr3R_7675001 RAL-439 1517 chr3R 7726145 7726187 chr3R 7726230 7726263 4 81 1.0 0.5 0.8 2.2 118 chr3R 7726145 intergenic not near genes chr3R 7726204 intergenic not near genes chr3R 7726263 intergenic not near genes chr3R_4_7725001 chr3R_7725001 RAL-439 1518 chr3R 7729451 7729495 chr3R 7737409 7737453 Stalker2 8 7958 4.0 8.5 6.2 1.1 8002 chr3R 7729451 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737453 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-439 1519 chr3R 7738591 7738610 chr3R 7738730 7738776 7 158 2.0 2.5 2.2 2.2 185 chr3R 7738591 intergenic CG43254 - chr3R 7738684 intergenic CG43254 - chr3R 7738776 intergenic CG43254 - chr3R_7_7735001 chr3R_7735001 RAL-439 1520 chr3R 7760235 7760278 chr3R 7760764 7760807 13 528 8.0 8.0 8.0 1.4 572 chr3R 7760235 intron Sp7 + chr3R 7760521 intron Sp7 + chr3R 7760807 5` UTR Sp7 + chr3R_13_7760001 chr3R_7760001 RAL-439 1521 chr3R 7775916 7775951 chr3R 7775998 7776050 8 96 3.5 4.5 4.0 1.6 134 chr3R 7775916 intergenic not near genes chr3R 7775983 intergenic not near genes chr3R 7776050 intergenic not near genes chr3R_8_7775001 chr3R_7775001 RAL-439 1522 chr3R 7849624 7849675 chr3R 7850811 7850827 1360 10 1173 2.0 4.5 3.2 2.4 1203 chr3R 7849624 intron CG34384 + chr3R 7850226 intron CG34384 + chr3R 7850827 intron CG34384 + chr3R_10_7850001 chr3R_7850001 RAL-439 1523 chr3R 7857626 7857669 chr3R 7857729 7857758 5 90 6.5 6.0 6.2 0.7 132 chr3R 7857626 3` UTR CG17816 - chr3R 7857692 3` UTR CG17816 - chr3R 7857758 3` UTR CG17816 - chr3R_5_7855001 chr3R_7855001 RAL-439 1524 chr3R 7883115 7883135 chr3R 7883213 7883228 7 96 4.0 7.0 5.5 1.1 113 chr3R 7883115 intron CG17816 - chr3R 7883172 intron CG17816 - chr3R 7883228 intron CG17816 - chr3R_7_7880001 chr3R_7880001 RAL-439 1525 chr3R 7883138 7883157 chr3R 7883211 7883220 5 86 4.0 6.5 5.2 0.8 82 chr3R 7883138 intron CG17816 - chr3R 7883179 intron CG17816 - chr3R 7883220 intron CG17816 - chr3R_5_7880001 chr3R_7880001 RAL-439 1526 chr3R 7973306 7973329 chr3R 7974388 7974411 1360 6 1082 6.5 9.5 8.0 0.7 1105 chr3R 7973306 intergenic not near genes chr3R 7973858 intergenic not near genes chr3R 7974411 3` UTR CD98hc - chr3R_6_7970001 chr3R_7970001 RAL-439 1527 chr3R 7973330 7973342 chr3R 7974382 7974424 1360 8 1076 5.5 8.5 7.0 1.0 1094 chr3R 7973330 intergenic not near genes chr3R 7973877 intergenic not near genes chr3R 7974424 3` UTR CD98hc - chr3R_8_7970001 chr3R_7970001 RAL-439 1528 chr3R 8040654 8040673 chr3R 8040749 8040778 4 102 1.5 5.5 3.5 0.9 124 chr3R 8040654 intergenic not near genes chr3R 8040716 intergenic not near genes chr3R 8040778 intergenic CG43060 + chr3R_4_8040001 chr3R_8040001 RAL-439 1529 chr3R 8090253 8090301 chr3R 8090449 8090484 15 191 4.0 4.0 4.0 3.0 231 chr3R 8090253 5` UTR CR44330 + chr3R 8090368 intergenic CR44330 + chr3R 8090484 intergenic CR44330 + chr3R_15_8090001 chr3R_8090001 RAL-439 1530 chr3R 8094397 8094431 chr3R 8099722 8099756 Transpac 9 5315 6.0 5.5 5.8 1.3 5359 chr3R 8094397 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099756 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-439 1531 chr3R 8101767 8101785 chr3R 8104848 8104889 G2 4 3091 1.5 4.5 3.0 1.0 3122 chr3R 8101767 exon CG7900 + chr3R 8103328 intron CG7900 + chr3R 8104889 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-439 1532 chr3R 8273719 8273763 chr3R 8273826 8273870 15 106 2.0 5.5 3.8 3.1 151 chr3R 8273719 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273870 intergenic not near genes chr3R_15_8270001 chr3R_8270001 RAL-439 1533 chr3R 8358124 8358137 chr3R 8358375 8358401 4 261 8.5 8.0 8.2 0.4 277 chr3R 8358124 intron stck + chr3R 8358262 intron stck + chr3R 8358401 intron stck + chr3R_4_8355001 chr3R_8355001 RAL-439 1534 chr3R 8403010 8403035 chr3R 8412180 8412214 roo 5 9176 1.5 1.0 1.2 2.3 9204 chr3R 8403010 intron CG45263 - chr3R 8407612 intron CG45263 - chr3R 8412214 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-439 1535 chr3R 8478075 8478107 chr3R 8478163 8478202 8 92 5.5 1.0 3.2 1.9 127 chr3R 8478075 intergenic CG45263 - chr3R 8478138 intergenic not near genes chr3R 8478202 intergenic not near genes chr3R_8_8475001 chr3R_8475001 RAL-439 1536 chr3R 8538259 8538299 chr3R 8542721 8542771 15 4464 24.0 37.0 30.5 0.5 4512 chr3R 8538259 intergenic not near genes chr3R 8540515 intergenic not near genes chr3R 8542771 intergenic not near genes chr3R_15_8540001 chr3R_8540001 RAL-439 1537 chr3R 8570458 8570471 chr3R 8575113 8575127 HMS-Beagle 5 4654 10.0 5.5 7.8 0.6 4669 chr3R 8570458 intergenic not near genes chr3R 8572792 intergenic not near genes chr3R 8575127 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-439 1538 chr3R 8570472 8570507 chr3R 8575112 8575163 HMS-Beagle 6 4640 3.5 5.0 4.2 1.2 4691 chr3R 8570472 intergenic not near genes chr3R 8572818 intergenic not near genes chr3R 8575163 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-439 1539 chr3R 8601778 8601786 chr3R 8610934 8610951 roo 4 9161 6.5 4.5 5.5 0.6 9173 chr3R 8601778 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-439 1540 chr3R 8601790 8601797 chr3R 8610930 8610931 roo 4 9146 5.5 4.0 4.8 0.7 9141 chr3R 8601790 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610931 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-439 1541 chr3R 8685275 8685307 chr3R 8685395 8685422 14 119 4.0 8.0 6.0 2.0 147 chr3R 8685275 intron CR44937 - chr3R 8685348 intron CR44937 - chr3R 8685422 intron CR44937 - chr3R_14_8685001 chr3R_8685001 RAL-439 1542 chr3R 8707336 8707382 chr3R 8709797 8709798 jockey 7 2450 1.5 3.0 2.2 2.2 2462 chr3R 8707336 intergenic not near genes chr3R 8708567 intergenic not near genes chr3R 8709798 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-439 1543 chr3R 8917892 8917907 chr3R 8917972 8918001 5 89 4.5 4.5 4.5 0.9 109 chr3R 8917892 intron pyd - chr3R 8917946 intron pyd - chr3R 8918001 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-439 1544 chr3R 8997359 8997391 chr3R 8997469 8997494 10 108 4.0 10.0 7.0 1.2 135 chr3R 8997359 intron CG31100 - chr3R 8997426 intron CG31100 - chr3R 8997494 intron CG31100 - chr3R_10_8995001 chr3R_8995001 RAL-439 1545 chr3R 9083120 9083159 chr3R 9083225 9083259 5 97 2.5 1.0 1.8 1.8 139 chr3R 9083120 intron pum - chr3R 9083190 intron pum - chr3R 9083259 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-439 1546 chr3R 9101822 9101851 chr3R 9101939 9101947 10 113 11.5 4.0 7.8 1.1 125 chr3R 9101822 intron pum - chr3R 9101884 intron pum - chr3R 9101947 intron pum - chr3R_10_9100001 chr3R_9100001 RAL-439 1547 chr3R 9108844 9108876 chr3R 9108940 9108971 8 94 9.5 3.5 6.5 1.1 127 chr3R 9108844 intron pum - chr3R 9108908 intron pum - chr3R 9108971 intron pum - chr3R_8_9105001 chr3R_9105001 RAL-439 1548 chr3R 9149434 9149474 chr3R 9149534 9149549 10 95 6.5 0.5 3.5 2.2 115 chr3R 9149434 intron pum - chr3R 9149492 intron pum - chr3R 9149549 intron pum - chr3R_10_9145001 chr3R_9145001 RAL-439 1549 chr3R 9278783 9278798 chr3R 9284056 9284062 Rt1a 5 5274 3.5 7.5 5.5 0.8 5279 chr3R 9278783 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284062 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-439 1550 chr3R 9278804 9278809 chr3R 9284045 9284058 Rt1a 5 5252 3.0 6.0 4.5 0.9 5254 chr3R 9278804 intergenic not near genes chr3R 9281431 intergenic not near genes chr3R 9284058 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-439 1551 chr3R 9316226 9316234 chr3R 9316429 9316437 4 203 7.0 7.0 7.0 0.5 211 chr3R 9316226 intron CG8861 - chr3R 9316332 intron CG8861 - chr3R 9316437 intron CG8861 - chr3R_4_9315001 chr3R_9315001 RAL-439 1552 chr3R 9319562 9319592 chr3R 9320011 9320037 jockey 7 450 12.5 6.5 9.5 0.7 475 chr3R 9319562 intron CG8861 - chr3R 9319800 intron CG8861 - chr3R 9320037 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-439 1553 chr3R 9319595 9319601 chr3R 9320005 9320010 jockey 4 430 10.0 4.5 7.2 0.5 415 chr3R 9319595 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320010 intron CG8861 - chr3R_4_9315001 chr3R_9315001 RAL-439 1554 chr3R 9330038 9330039 chr3R 18955051 18955052 4 9625013 9.5 18.0 13.8 0.3 9625014 chr3R 9330038 intron CG12951 - chr3R 14142545 intergenic not near genes chr3R 18955052 intron,intron CG42613 +,CG43732 + chr3R_4_14140001 chr3R_14140001 RAL-439 1555 chr3R 9361807 9361840 chr3R 9362068 9362096 pogo 13 257 5.5 8.5 7.0 1.6 289 chr3R 9361807 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362096 3` UTR CG45050 + chr3R_13_9360001 chr3R_9360001 RAL-439 1556 chr3R 9382828 9382849 chr3R 9382952 9382976 5 128 1.5 10.0 5.8 0.7 148 chr3R 9382828 intron FER - chr3R 9382902 intron FER - chr3R 9382976 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-439 1557 chr3R 9434706 9434725 chr3R 9434774 9434797 7 86 4.5 3.5 4.0 1.4 91 chr3R 9434706 intron ps + chr3R 9434752 intron ps + chr3R 9434797 intron ps + chr3R_7_9430001 chr3R_9430001 RAL-439 1558 chr3R 9447452 9447455 chr3R 9447550 9447579 4 113 6.0 4.5 5.2 0.6 127 chr3R 9447452 intron ps + chr3R 9447516 intron ps + chr3R 9447579 intron ps + chr3R_4_9445001 chr3R_9445001 RAL-439 1559 chr3R 9526569 9526618 chr3R 9526671 9526698 5 92 0.5 2.0 1.2 2.3 129 chr3R 9526569 exon CG8176 + chr3R 9526634 3` UTR CG8176 + chr3R 9526698 3` UTR CG8176 + chr3R_5_9525001 chr3R_9525001 RAL-439 1560 chr3R 9586678 9586711 chr3R 9586785 9586818 7 109 6.0 0.5 3.2 1.7 140 chr3R 9586678 intergenic CG8301 +,P58IPK + chr3R 9586748 intergenic CG8301 +,P58IPK + chr3R 9586818 intergenic P58IPK +,CG8301 + chr3R_7_9585001 chr3R_9585001 RAL-439 1561 chr3R 9592468 9592516 chr3R 9592841 9592887 14 370 5.0 8.0 6.5 1.9 419 chr3R 9592468 intron CG8312 + chr3R 9592678 intron CG8312 + chr3R 9592887 intron CG8312 + chr3R_14_9590001 chr3R_9590001 RAL-439 1562 chr3R 9611856 9611897 chr3R 9611958 9611989 11 100 8.5 1.0 4.8 1.9 133 chr3R 9611856 intron CG8312 + chr3R 9611922 intron CG8312 + chr3R 9611989 intron CG8312 + chr3R_11_9610001 chr3R_9610001 RAL-439 1563 chr3R 9702260 9702291 chr3R 9702345 9702347 4 70 5.5 3.5 4.5 0.7 87 chr3R 9702260 intron Unc-115a - chr3R 9702304 intron Unc-115a - chr3R 9702347 intron Unc-115a - chr3R_4_9700001 chr3R_9700001 RAL-439 1564 chr3R 9858666 9858688 chr3R 9858784 9858806 7 116 7.0 5.0 6.0 1.0 140 chr3R 9858666 intron Teh1 - chr3R 9858736 intron Teh1 - chr3R 9858806 intron Teh1 - chr3R_7_9855001 chr3R_9855001 RAL-439 1565 chr3R 9878001 9878016 chr3R 9878109 9878119 4 105 0.5 0.0 0.2 3.3 118 chr3R 9878001 intron,intron Glut4EF +,CR45029 - chr3R 9878060 intron,intron Glut4EF +,CR45029 - chr3R 9878119 intron,intron Glut4EF +,CR45029 - chr3R_4_9875001 chr3R_9875001 RAL-439 1566 chr3R 9885641 9885647 chr3R 9885738 9885751 7 103 5.0 8.0 6.5 0.9 110 chr3R 9885641 intron Glut4EF + chr3R 9885696 intron Glut4EF + chr3R 9885751 intron Glut4EF + chr3R_7_9885001 chr3R_9885001 RAL-439 1567 chr3R 10073761 10073793 chr3R 10073882 10073890 11 123 6.0 6.5 6.2 1.5 129 chr3R 10073761 3` UTR nerfin-2 + chr3R 10073826 3` UTR CG5361 - chr3R 10073890 exon CG5361 - chr3R_11_10070001 chr3R_10070001 RAL-439 1568 chr3R 10174100 10174157 chr3R 10174202 10174244 16 92 1.5 4.0 2.8 4.2 144 chr3R 10174100 intron CG12814 - chr3R 10174172 intron CG12814 - chr3R 10174244 intron CG12814 - chr3R_16_10170001 chr3R_10170001 RAL-439 1569 chr3R 10231149 10231179 chr3R 10231629 10231669 8 482 7.0 7.0 7.0 1.0 520 chr3R 10231149 intron CG42795 + chr3R 10231409 intron CG42795 + chr3R 10231669 intron CG42795 + chr3R_8_10230001 chr3R_10230001 RAL-439 1570 chr3R 10231769 10231811 chr3R 10237366 10237408 mdg3 18 5594 5.0 4.5 4.8 3.1 5639 chr3R 10231769 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237408 intron CG42795 + chr3R_18_10230001 chr3R_10230001 RAL-439 1571 chr3R 10255363 10255382 chr3R 10260823 10260837 I-element 6 5459 11.0 3.5 7.2 0.7 5474 chr3R 10255363 3` UTR Sirt6 - chr3R 10258100 intron Sirt6 - chr3R 10260837 exon Sirt6 - chr3R_6_10255001 chr3R_10255001 RAL-439 1572 chr3R 10403013 10403059 chr3R 10403114 10403160 4 101 10.5 5.5 8.0 0.4 147 chr3R 10403013 3` UTR CG6325 - chr3R 10403086 3` UTR CG6325 - chr3R 10403160 3` UTR CG6325 - chr3R_4_10400001 chr3R_10400001 RAL-439 1573 chr3R 10531875 10531895 chr3R 10531961 10531996 5 92 4.5 1.0 2.8 1.3 121 chr3R 10531875 intron hth - chr3R 10531936 intron hth - chr3R 10531996 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-439 1574 chr3R 10535328 10535338 chr3R 10535427 10535451 6 109 4.0 0.5 2.2 1.9 123 chr3R 10535328 intron hth - chr3R 10535390 intron hth - chr3R 10535451 intron hth - chr3R_6_10535001 chr3R_10535001 RAL-439 1575 chr3R 10594573 10594623 chr3R 10594678 10594708 11 98 0.5 2.0 1.2 5.0 135 chr3R 10594573 intron hth - chr3R 10594640 intron hth - chr3R 10594708 intron hth - chr3R_11_10590001 chr3R_10590001 RAL-439 1576 chr3R 10627622 10627628 chr3R 10627749 10627751 4 126 5.0 9.0 7.0 0.5 129 chr3R 10627622 intergenic not near genes chr3R 10627686 intergenic not near genes chr3R 10627751 intergenic not near genes chr3R_4_10625001 chr3R_10625001 RAL-439 1577 chr3R 10646087 10646134 chr3R 10646258 10646305 10 164 8.0 6.0 7.0 1.2 218 chr3R 10646087 intergenic CR44018 + chr3R 10646196 intergenic CR44018 + chr3R 10646305 intergenic not near genes chr3R_10_10645001 chr3R_10645001 RAL-439 1578 chr3R 10727644 10727678 chr3R 10727729 10727753 7 78 2.0 3.5 2.8 1.8 109 chr3R 10727644 intergenic not near genes chr3R 10727698 intergenic not near genes chr3R 10727753 intergenic not near genes chr3R_7_10725001 chr3R_10725001 RAL-439 1579 chr3R 10804160 10804208 chr3R 10811707 10811725 17.6 19 7545 6.0 6.5 6.2 2.6 7565 chr3R 10804160 intergenic CG14692 - chr3R 10807942 intergenic not near genes chr3R 10811725 3` UTR CG14693 - chr3R_19_10805001 chr3R_10805001 RAL-439 1580 chr3R 10878124 10878156 chr3R 10878383 10878414 4 259 4.0 2.5 3.2 1.0 290 chr3R 10878124 3` UTR Sodh-2 + chr3R 10878269 3` UTR CG14695 - chr3R 10878414 exon CG14695 - chr3R_4_10875001 chr3R_10875001 RAL-439 1581 chr3R 10919667 10919717 chr3R 10919764 10919815 6 98 6.0 2.5 4.2 1.2 148 chr3R 10919667 intergenic not near genes chr3R 10919741 intergenic not near genes chr3R 10919815 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-439 1582 chr3R 10920041 10920074 chr3R 10920129 10920172 18 95 4.0 3.0 3.5 4.0 131 chr3R 10920041 intergenic not near genes chr3R 10920106 intergenic not near genes chr3R 10920172 intergenic not near genes chr3R_18_10920001 chr3R_10920001 RAL-439 1583 chr3R 11088659 11088698 chr3R 11088761 11088800 11 106 5.0 2.0 3.5 2.4 141 chr3R 11088659 exon CG43449 + chr3R 11088730 3` UTR CG43449 + chr3R 11088800 3` UTR CG43449 + chr3R_11_11085001 chr3R_11085001 RAL-439 1584 chr3R 11090826 11090863 chr3R 11090934 11090954 8 96 5.0 3.5 4.2 1.5 128 chr3R 11090826 intergenic not near genes chr3R 11090890 intergenic not near genes chr3R 11090954 intergenic not near genes chr3R_8_11090001 chr3R_11090001 RAL-439 1585 chr3R 11090872 11090874 chr3R 11090930 11090970 5 73 3.0 3.0 3.0 1.2 98 chr3R 11090872 intergenic not near genes chr3R 11090921 intergenic not near genes chr3R 11090970 intergenic not near genes chr3R_5_11090001 chr3R_11090001 RAL-439 1586 chr3R 11103150 11103173 chr3R 11103252 11103265 6 97 0.5 0.0 0.2 5.0 115 chr3R 11103150 intergenic not near genes chr3R 11103208 intergenic not near genes chr3R 11103265 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-439 1587 chr3R 11369645 11369668 chr3R 11370120 11370132 7 471 1.5 7.5 4.5 1.3 487 chr3R 11369645 intron pros + chr3R 11369888 intron pros + chr3R 11370132 intron pros + chr3R_7_11365001 chr3R_11365001 RAL-439 1588 chr3R 11379225 11379261 chr3R 11388393 11388433 roo 6 9168 6.5 3.5 5.0 1.0 9208 chr3R 11379225 intron pros + chr3R 11383829 intron pros + chr3R 11388433 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-439 1589 chr3R 11618499 11618540 chr3R 11618909 11618960 6 406 2.5 1.0 1.8 2.1 461 chr3R 11618499 intron Jupiter - chr3R 11618730 intron Jupiter - chr3R 11618960 intron Jupiter - chr3R_6_11615001 chr3R_11615001 RAL-439 1590 chr3R 11694705 11694751 chr3R 11694818 11694844 12 107 6.5 2.0 4.2 2.3 139 chr3R 11694705 intergenic Fer3 - chr3R 11694774 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_12_11690001 chr3R_11690001 RAL-439 1591 chr3R 11695721 11695768 chr3R 11695822 11695869 15 95 2.0 5.5 3.8 3.1 148 chr3R 11695721 intergenic not near genes chr3R 11695795 intergenic not near genes chr3R 11695869 intergenic not near genes chr3R_15_11695001 chr3R_11695001 RAL-439 1592 chr3R 11853436 11853468 chr3R 11853605 11853616 8 159 1.0 10.0 5.5 1.2 180 chr3R 11853436 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853616 intron CG6959 - chr3R_8_11850001 chr3R_11850001 RAL-439 1593 chr3R 11853472 11853765 chr3R 11853596 11853888 5 126 14.5 6.0 10.2 0.4 416 chr3R 11853472 intron CG6959 - chr3R 11853680 intron CG6959 - chr3R 11853888 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-439 1594 chr3R 11853787 11853804 chr3R 11853877 11853899 6 114 6.0 7.5 6.8 0.8 112 chr3R 11853787 intron CG6959 - chr3R 11853843 intron CG6959 - chr3R 11853899 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-439 1595 chr3R 11957837 11957875 chr3R 11958140 11958171 S-element 6 292 2.0 1.5 1.8 2.1 334 chr3R 11957837 intergenic not near genes chr3R 11958004 intergenic not near genes chr3R 11958171 intergenic not near genes chr3R_6_11955001 chr3R_11955001 RAL-439 1596 chr3R 12088072 12088323 chr3R 12088174 12088437 16 108 7.5 2.0 4.8 2.8 365 chr3R 12088072 intron CG14741 - chr3R 12088254 intron CG14741 - chr3R 12088437 intron CG14741 - chr3R_16_12085001 chr3R_12085001 RAL-439 1597 chr3R 12328159 12328189 chr3R 12328290 12328313 4 130 7.0 2.0 4.5 0.7 154 chr3R 12328159 intergenic CR45584 + chr3R 12328236 intergenic CR45584 + chr3R 12328313 intergenic CR45584 + chr3R_4_12325001 chr3R_12325001 RAL-439 1598 chr3R 12546435 12546483 chr3R 12546538 12546586 21 98 4.5 7.0 5.8 3.1 151 chr3R 12546435 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546586 intron Octbeta3R - chr3R_21_12545001 chr3R_12545001 RAL-439 1599 chr3R 12720719 12720758 chr3R 12720898 12720907 9 169 1.5 3.0 2.2 2.8 188 chr3R 12720719 intron Men - chr3R 12720813 intron Men - chr3R 12720907 intron Men - chr3R_9_12720001 chr3R_12720001 RAL-439 1600 chr3R 12763116 12763154 chr3R 12763213 12763251 14 95 0.0 4.5 2.2 4.4 135 chr3R 12763116 intron beat-Vc - chr3R 12763184 intron beat-Vc - chr3R 12763251 intron beat-Vc - chr3R_14_12760001 chr3R_12760001 RAL-439 1601 chr3R 12819020 12819051 chr3R 12819118 12819151 8 100 2.5 4.5 3.5 1.8 131 chr3R 12819020 intergenic not near genes chr3R 12819086 intergenic not near genes chr3R 12819151 intergenic not near genes chr3R_8_12815001 chr3R_12815001 RAL-439 1602 chr3R 12864556 12864586 chr3R 12865051 12865091 roo 6 501 2.0 3.0 2.5 1.7 535 chr3R 12864556 intergenic not near genes chr3R 12864824 intergenic not near genes chr3R 12865091 intergenic not near genes chr3R_6_12860001 chr3R_12860001 RAL-439 1603 chr3R 12866477 12866518 chr3R 12866641 12866679 11 167 1.0 1.5 1.2 5.0 202 chr3R 12866477 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866679 intergenic not near genes chr3R_11_12865001 chr3R_12865001 RAL-439 1604 chr3R 12885092 12885132 chr3R 12885218 12885229 8 118 3.5 5.5 4.5 1.5 137 chr3R 12885092 intergenic not near genes chr3R 12885160 intergenic not near genes chr3R 12885229 intergenic not near genes chr3R_8_12885001 chr3R_12885001 RAL-439 1605 chr3R 12972535 12972583 chr3R 12972694 12972742 10 154 7.5 3.5 5.5 1.5 207 chr3R 12972535 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972742 intron CG7381 - chr3R_10_12970001 chr3R_12970001 RAL-439 1606 chr3R 13064763 13064777 chr3R 13064882 13064896 5 118 2.5 0.0 1.2 2.3 133 chr3R 13064763 intron sim + chr3R 13064830 intron sim + chr3R 13064896 intron sim + chr3R_5_13060001 chr3R_13060001 RAL-439 1607 chr3R 13066984 13067007 chr3R 13067091 13067114 6 104 5.0 5.0 5.0 1.0 130 chr3R 13066984 intron sim + chr3R 13067049 intron sim + chr3R 13067114 intron sim + chr3R_6_13065001 chr3R_13065001 RAL-439 1608 chr3R 13075347 13075367 chr3R 13075448 13075468 8 100 7.5 1.0 4.2 1.5 121 chr3R 13075347 intron sim + chr3R 13075408 intron sim + chr3R 13075468 intron sim + chr3R_8_13075001 chr3R_13075001 RAL-439 1609 chr3R 13075379 13075385 chr3R 13075440 13075446 5 74 4.0 1.0 2.5 1.4 67 chr3R 13075379 intron sim + chr3R 13075412 intron sim + chr3R 13075446 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-439 1610 chr3R 13135820 13135852 chr3R 13138005 13138037 pogo 5 2184 6.0 5.5 5.8 0.7 2217 chr3R 13135820 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138037 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-439 1611 chr3R 13143055 13143066 chr3R 13148619 13148657 mdg3 4 5578 2.0 6.5 4.2 0.8 5602 chr3R 13143055 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145856 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148657 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-439 1612 chr3R 13314088 13314130 chr3R 13318890 13318893 Doc 10 4802 7.5 10.0 8.8 1.0 4805 chr3R 13314088 intergenic not near genes chr3R 13316490 intergenic not near genes chr3R 13318893 intergenic CG45080 - chr3R_10_13315001 chr3R_13315001 RAL-439 1613 chr3R 13348991 13349002 chr3R 13349087 13349096 4 95 13.0 5.0 9.0 0.4 105 chr3R 13348991 intergenic not near genes chr3R 13349044 intergenic not near genes chr3R 13349096 intergenic not near genes chr3R_4_13345001 chr3R_13345001 RAL-439 1614 chr3R 13349003 13349028 chr3R 13349079 13349116 9 88 7.0 5.0 6.0 1.3 113 chr3R 13349003 intergenic not near genes chr3R 13349060 intergenic not near genes chr3R 13349116 intergenic not near genes chr3R_9_13345001 chr3R_13345001 RAL-439 1615 chr3R 13364620 13364646 chr3R 13364719 13364750 5 102 6.0 0.5 3.2 1.2 130 chr3R 13364620 intron poly - chr3R 13364685 intron poly - chr3R 13364750 intron poly - chr3R_5_13360001 chr3R_13360001 RAL-439 1616 chr3R 13418657 13418682 chr3R 13418753 13418762 4 90 4.5 7.5 6.0 0.6 105 chr3R 13418657 intergenic not near genes chr3R 13418710 intergenic not near genes chr3R 13418762 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-439 1617 chr3R 13435384 13435419 chr3R 13435566 13435579 7 184 6.5 3.5 5.0 1.2 195 chr3R 13435384 intergenic yrt - chr3R 13435482 intergenic yrt - chr3R 13435579 intergenic not near genes chr3R_7_13435001 chr3R_13435001 RAL-439 1618 chr3R 13517208 13517259 chr3R 13520045 13520096 jockey 4 2829 3.0 0.0 1.5 1.6 2888 chr3R 13517208 intergenic not near genes chr3R 13518652 intergenic not near genes chr3R 13520096 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-439 1619 chr3R 13603052 13603074 chr3R 13603150 13603160 8 103 3.5 5.5 4.5 1.5 108 chr3R 13603052 intergenic not near genes chr3R 13603106 intergenic not near genes chr3R 13603160 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-439 1620 chr3R 13604041 13604046 chr3R 13604296 13604301 6 255 12.0 4.5 8.2 0.7 260 chr3R 13604041 intergenic not near genes chr3R 13604171 intergenic not near genes chr3R 13604301 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-439 1621 chr3R 13604050 13604088 chr3R 13604295 13604333 13 247 5.0 4.5 4.8 2.2 283 chr3R 13604050 intergenic not near genes chr3R 13604192 intergenic not near genes chr3R 13604333 intergenic not near genes chr3R_13_13600001 chr3R_13600001 RAL-439 1622 chr3R 13606691 13606733 chr3R 13606858 13606900 11 159 1.5 3.0 2.2 3.4 209 chr3R 13606691 intergenic CG9759 - chr3R 13606796 intergenic CG9759 - chr3R 13606900 intergenic CG9759 - chr3R_11_13605001 chr3R_13605001 RAL-439 1623 chr3R 13625671 13625724 chr3R 13625772 13625775 15 94 3.0 4.5 3.8 3.1 104 chr3R 13625671 intergenic not near genes chr3R 13625723 intergenic not near genes chr3R 13625775 intergenic not near genes chr3R_15_13625001 chr3R_13625001 RAL-439 1624 chr3R 13758135 13758172 chr3R 13758241 13758278 5 106 0.0 11.5 5.8 0.7 143 chr3R 13758135 intron CG34383 + chr3R 13758206 intron CG34383 + chr3R 13758278 intron CG34383 + chr3R_5_13755001 chr3R_13755001 RAL-439 1625 chr3R 13782043 13782071 chr3R 13782134 13782162 4 93 5.0 2.0 3.5 0.9 119 chr3R 13782043 exon CG9286 + chr3R 13782102 intergenic CG9286 +,Dip-B + chr3R 13782162 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-439 1626 chr3R 13975356 13975405 chr3R 13975451 13975483 14 93 6.0 1.5 3.8 2.9 127 chr3R 13975356 intron rdx - chr3R 13975420 intron rdx - chr3R 13975483 intron rdx - chr3R_14_13975001 chr3R_13975001 RAL-439 1627 chr3R 14047764 14047803 chr3R 14047869 14047912 8 107 0.0 8.5 4.2 1.5 148 chr3R 14047764 intergenic not near genes chr3R 14047838 intergenic not near genes chr3R 14047912 intergenic not near genes chr3R_8_14045001 chr3R_14045001 RAL-439 1628 chr3R 14049013 14049045 chr3R 14049094 14049142 8 88 1.5 6.5 4.0 1.6 129 chr3R 14049013 intergenic not near genes chr3R 14049078 intergenic not near genes chr3R 14049142 intergenic not near genes chr3R_8_14045001 chr3R_14045001 RAL-439 1629 chr3R 14058137 14058147 chr3R 14058242 14058287 6 129 3.5 5.0 4.2 1.2 150 chr3R 14058137 intron foxo + chr3R 14058212 intron foxo + chr3R 14058287 intron foxo + chr3R_6_14055001 chr3R_14055001 RAL-439 1630 chr3R 14067124 14067155 chr3R 14067223 14067254 12 96 2.0 3.5 2.8 3.2 130 chr3R 14067124 exon foxo + chr3R 14067189 intron foxo + chr3R 14067254 intron foxo + chr3R_12_14065001 chr3R_14065001 RAL-439 1631 chr3R 14070115 14070132 chr3R 14070216 14070226 4 98 6.5 3.0 4.8 0.7 111 chr3R 14070115 intron foxo + chr3R 14070170 intron foxo + chr3R 14070226 intron foxo + chr3R_4_14070001 chr3R_14070001 RAL-439 1632 chr3R 14117428 14117471 chr3R 14117524 14117567 10 92 6.5 8.0 7.2 1.2 139 chr3R 14117428 intron Kif19A - chr3R 14117498 intron Kif19A - chr3R 14117567 intron Kif19A - chr3R_10_14115001 chr3R_14115001 RAL-439 1633 chr3R 14144219 14144243 chr3R 14144291 14144332 5 83 1.0 1.5 1.2 2.3 113 chr3R 14144219 intergenic not near genes chr3R 14144276 intergenic not near genes chr3R 14144332 intergenic not near genes chr3R_5_14140001 chr3R_14140001 RAL-439 1634 chr3R 14163620 14163669 chr3R 14163722 14163745 10 94 4.5 6.5 5.5 1.5 125 chr3R 14163620 3` UTR CG3199 + chr3R 14163682 intergenic CG3199 + chr3R 14163745 intergenic CG3199 + chr3R_10_14160001 chr3R_14160001 RAL-439 1635 chr3R 14180798 14180829 chr3R 14185583 14185590 F-element 8 4774 4.5 2.5 3.5 1.8 4792 chr3R 14180798 intron Dop1R1 - chr3R 14183194 intron Dop1R1 - chr3R 14185590 intron Dop1R1 - chr3R_8_14180001 chr3R_14180001 RAL-439 1636 chr3R 14384635 14384642 chr3R 14384714 14384727 4 87 0.0 0.0 0.0 4.0 92 chr3R 14384635 intergenic not near genes chr3R 14384681 intergenic not near genes chr3R 14384727 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-439 1637 chr3R 14469778 14469827 chr3R 14469874 14469923 10 91 2.0 3.5 2.8 2.6 145 chr3R 14469778 intron cv-c - chr3R 14469850 intron cv-c - chr3R 14469923 intron cv-c - chr3R_10_14465001 chr3R_14465001 RAL-439 1638 chr3R 14514473 14514507 chr3R 14514564 14514577 9 94 2.5 5.0 3.8 1.9 104 chr3R 14514473 3` UTR Pde6 - chr3R 14514525 3` UTR Pde6 - chr3R 14514577 3` UTR Pde6 - chr3R_9_14510001 chr3R_14510001 RAL-439 1639 chr3R 14533587 14533591 chr3R 14533679 14533694 4 103 0.0 5.0 2.5 1.1 107 chr3R 14533587 intron Pde6 - chr3R 14533640 intron Pde6 - chr3R 14533694 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-439 1640 chr3R 14560891 14560926 chr3R 14560994 14561030 8 103 3.0 1.0 2.0 2.7 139 chr3R 14560891 intergenic CG14850 + chr3R 14560960 5` UTR CG14850 + chr3R 14561030 exon CG14850 + chr3R_8_14560001 chr3R_14560001 RAL-439 1641 chr3R 14608449 14608476 chr3R 14608561 14608588 11 112 4.0 10.0 7.0 1.4 139 chr3R 14608449 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608588 intergenic not near genes chr3R_11_14605001 chr3R_14605001 RAL-439 1642 chr3R 14695804 14695833 chr3R 14696059 14696098 15 262 8.5 6.0 7.2 1.8 294 chr3R 14695804 intron Meltrin - chr3R 14695951 intron Meltrin - chr3R 14696098 intron Meltrin - chr3R_15_14695001 chr3R_14695001 RAL-439 1643 chr3R 14704374 14704419 chr3R 14704460 14704474 11 86 5.0 3.5 4.2 2.1 100 chr3R 14704374 intron kibra - chr3R 14704424 intron kibra - chr3R 14704474 intron kibra - chr3R_11_14700001 chr3R_14700001 RAL-439 1644 chr3R 14738188 14738214 chr3R 14738408 14738458 4 232 1.0 3.5 2.2 1.2 270 chr3R 14738188 intron eff - chr3R 14738323 intron eff - chr3R 14738458 intron eff - chr3R_4_14735001 chr3R_14735001 RAL-439 1645 chr3R 14779063 14779081 chr3R 14779163 14779169 6 98 4.0 2.0 3.0 1.5 106 chr3R 14779063 intron jvl + chr3R 14779116 intron jvl + chr3R 14779169 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-439 1646 chr3R 14779082 14779095 chr3R 14779154 14779195 4 88 2.0 2.0 2.0 1.3 113 chr3R 14779082 intron jvl + chr3R 14779138 intron jvl + chr3R 14779195 intron jvl + chr3R_4_14775001 chr3R_14775001 RAL-439 1647 chr3R 14787120 14787136 chr3R 14787547 14787564 7 429 3.5 2.0 2.8 1.8 444 chr3R 14787120 intron jvl + chr3R 14787342 intron jvl + chr3R 14787564 intron jvl + chr3R_7_14785001 chr3R_14785001 RAL-439 1648 chr3R 14821602 14821647 chr3R 14821762 14821811 22 166 4.0 6.5 5.2 3.5 209 chr3R 14821602 intron btsz - chr3R 14821706 intron btsz - chr3R 14821811 intron btsz - chr3R_22_14820001 chr3R_14820001 RAL-439 1649 chr3R 14898454 14898505 chr3R 14898594 14898632 19 133 9.5 4.5 7.0 2.4 178 chr3R 14898454 intergenic Nup93-2 -,CG3817 + chr3R 14898543 intergenic Nup93-2 -,CG3817 + chr3R 14898632 intergenic CG3817 +,Nup93-2 - chr3R_19_14895001 chr3R_14895001 RAL-439 1650 chr3R 14924365 14924405 chr3R 14924457 14924512 6 100 3.5 3.0 3.2 1.4 147 chr3R 14924365 intergenic not near genes chr3R 14924438 intergenic not near genes chr3R 14924512 intergenic not near genes chr3R_6_14920001 chr3R_14920001 RAL-439 1651 chr3R 15026313 15026336 chr3R 15026419 15026442 4 105 2.5 4.0 3.2 1.0 129 chr3R 15026313 intergenic not near genes chr3R 15026378 intergenic not near genes chr3R 15026442 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-439 1652 chr3R 15041431 15041451 chr3R 15045195 15045239 Doc 5 3775 5.5 5.0 5.2 0.8 3808 chr3R 15041431 intergenic not near genes chr3R 15043335 intergenic not near genes chr3R 15045239 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-439 1653 chr3R 15079792 15079838 chr3R 15080048 15080099 pogo 12 256 3.5 4.5 4.0 2.4 307 chr3R 15079792 3` UTR CG6966 - chr3R 15079946 3` UTR CG6966 - chr3R 15080099 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-439 1654 chr3R 15102493 15102531 chr3R 15109771 15109805 412 6 7274 3.5 4.5 4.0 1.2 7312 chr3R 15102493 intron CG42788 - chr3R 15106149 intron CG42788 - chr3R 15109805 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-439 1655 chr3R 15114894 15114919 chr3R 15114990 15115015 6 96 8.5 5.0 6.8 0.8 121 chr3R 15114894 intron CG42788 - chr3R 15114954 intron CG42788 - chr3R 15115015 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-439 1656 chr3R 15127761 15127807 chr3R 15127861 15127907 17 100 2.5 5.5 4.0 3.4 146 chr3R 15127761 intron CG42788 - chr3R 15127834 intron CG42788 - chr3R 15127907 intron CG42788 - chr3R_17_15125001 chr3R_15125001 RAL-439 1657 chr3R 15132041 15132078 chr3R 15135120 15135157 Juan 7 3072 7.5 9.0 8.2 0.8 3116 chr3R 15132041 intergenic CG42788 - chr3R 15133599 intergenic not near genes chr3R 15135157 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-439 1658 chr3R 15160547 15160590 chr3R 15160665 15160708 15 115 7.0 6.5 6.8 1.9 161 chr3R 15160547 intron Gyc88E + chr3R 15160628 intron Gyc88E + chr3R 15160708 intron Gyc88E + chr3R_15_15160001 chr3R_15160001 RAL-439 1659 chr3R 15180890 15180903 chr3R 15180996 15181004 4 102 8.0 0.0 4.0 0.8 114 chr3R 15180890 intron Gyc88E + chr3R 15180947 intron Gyc88E + chr3R 15181004 intron Gyc88E + chr3R_4_15180001 chr3R_15180001 RAL-439 1660 chr3R 15184536 15184569 chr3R 15184622 15184651 13 90 2.5 2.5 2.5 3.7 115 chr3R 15184536 intron Gyc88E + chr3R 15184594 intron Gyc88E + chr3R 15184651 intron Gyc88E + chr3R_13_15180001 chr3R_15180001 RAL-439 1661 chr3R 15246904 15246949 chr3R 15247108 15247117 12 195 4.0 3.5 3.8 2.5 213 chr3R 15246904 intergenic CG6499 -,Hsc70-4 + chr3R 15247010 intergenic CG6499 -,Hsc70-4 + chr3R 15247117 intergenic CG6499 - chr3R_12_15245001 chr3R_15245001 RAL-439 1662 chr3R 15302222 15302225 chr3R 15302322 15302331 4 103 10.0 1.0 5.5 0.6 109 chr3R 15302222 intron Tm1 + chr3R 15302276 intron Tm1 + chr3R 15302331 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-439 1663 chr3R 15302236 15302248 chr3R 15302319 15302327 4 85 6.0 1.0 3.5 0.9 91 chr3R 15302236 intron Tm1 + chr3R 15302282 intron Tm1 + chr3R 15302327 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-439 1664 chr3R 15406127 15406153 chr3R 15406228 15406242 8 96 9.5 1.5 5.5 1.2 115 chr3R 15406127 intron CG6125 - chr3R 15406184 intron CG6125 - chr3R 15406242 intron CG6125 - chr3R_8_15405001 chr3R_15405001 RAL-439 1665 chr3R 15416235 15416285 chr3R 15416335 15416343 5 87 1.0 5.0 3.0 1.2 108 chr3R 15416235 3` UTR Atx2 + chr3R 15416289 3` UTR Atx2 + chr3R 15416343 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-439 1666 chr3R 15464758 15464773 chr3R 15464868 15464883 4 110 11.0 1.0 6.0 0.6 125 chr3R 15464758 intron AdamTS-A - chr3R 15464820 intron AdamTS-A - chr3R 15464883 intron AdamTS-A - chr3R_4_15460001 chr3R_15460001 RAL-439 1667 chr3R 15571248 15571484 chr3R 15571365 15571595 8 116 8.5 2.5 5.5 1.2 347 chr3R 15571248 intergenic not near genes chr3R 15571422 intergenic not near genes chr3R 15571595 intergenic not near genes chr3R_8_15570001 chr3R_15570001 RAL-439 1668 chr3R 15601152 15601193 chr3R 15608694 15608715 412 9 7537 3.5 6.0 4.8 1.6 7563 chr3R 15601152 intergenic not near genes chr3R 15604934 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-439 1669 chr3R 15610551 15610591 chr3R 15610642 15610687 8 90 1.0 2.5 1.8 2.9 136 chr3R 15610551 intergenic not near genes chr3R 15610619 intergenic not near genes chr3R 15610687 intergenic not near genes chr3R_8_15610001 chr3R_15610001 RAL-439 1670 chr3R 15639342 15639367 chr3R 15639632 15639652 4 288 1.5 8.5 5.0 0.7 310 chr3R 15639342 intergenic not near genes chr3R 15639497 intergenic not near genes chr3R 15639652 intergenic not near genes chr3R_4_15635001 chr3R_15635001 RAL-439 1671 chr3R 15691187 15691311 chr3R 15691287 15691412 6 108 0.5 0.5 0.5 4.0 225 chr3R 15691187 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691412 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-439 1672 chr3R 15711271 15711281 chr3R 15711359 15711380 4 96 5.5 2.5 4.0 0.8 109 chr3R 15711271 intergenic not near genes chr3R 15711326 intergenic not near genes chr3R 15711380 intergenic not near genes chr3R_4_15710001 chr3R_15710001 RAL-439 1673 chr3R 15718413 15718450 chr3R 15724763 15724793 15 6346 17.0 14.5 15.8 0.9 6380 chr3R 15718413 intergenic not near genes chr3R 15721603 intergenic not near genes chr3R 15724793 intergenic not near genes chr3R_15_15720001 chr3R_15720001 RAL-439 1674 chr3R 15718263 15718295 chr3R 15724913 15724930 7 6643 27.0 28.5 27.8 0.2 6667 chr3R 15718263 intergenic not near genes chr3R 15721596 intergenic not near genes chr3R 15724930 intergenic not near genes chr3R_7_15720001 chr3R_15720001 RAL-439 1675 chr3R 15735222 15735237 chr3R 15739962 15739977 F-element 6 4740 2.5 5.0 3.8 1.2 4755 chr3R 15735222 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739977 intergenic not near genes chr3R_6_15735001 chr3R_15735001 RAL-439 1676 chr3R 15779641 15779667 chr3R 15779742 15779768 9 98 4.5 7.5 6.0 1.3 127 chr3R 15779641 intergenic CG5614 + chr3R 15779704 intergenic CG5614 + chr3R 15779768 intergenic CG5614 + chr3R_9_15775001 chr3R_15775001 RAL-439 1677 chr3R 16073424 16073450 chr3R 16073548 16073574 5 124 6.0 4.5 5.2 0.8 150 chr3R 16073424 intron Mhcl - chr3R 16073499 intron Mhcl - chr3R 16073574 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-439 1678 chr3R 16073455 16073471 chr3R 16073544 16073595 5 110 3.5 3.0 3.2 1.2 140 chr3R 16073455 intron Mhcl - chr3R 16073525 intron Mhcl - chr3R 16073595 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-439 1679 chr3R 16225073 16225119 chr3R 16225173 16225204 18 99 3.0 4.5 3.8 3.8 131 chr3R 16225073 intergenic not near genes chr3R 16225138 intergenic not near genes chr3R 16225204 intergenic tara + chr3R_18_16225001 chr3R_16225001 RAL-439 1680 chr3R 16374279 16374314 chr3R 16374416 16374451 13 132 3.5 4.5 4.0 2.6 172 chr3R 16374279 intergenic ss - chr3R 16374365 intergenic ss - chr3R 16374451 3` UTR ss - chr3R_13_16370001 chr3R_16370001 RAL-439 1681 chr3R 16601394 16601437 chr3R 16601496 16601523 13 98 2.0 3.5 2.8 3.4 129 chr3R 16601394 intron CG10345 - chr3R 16601458 intron CG10345 - chr3R 16601523 intron CG10345 - chr3R_13_16600001 chr3R_16600001 RAL-439 1682 chr3R 16735843 16735871 chr3R 16736029 16736041 4 182 3.0 5.0 4.0 0.8 198 chr3R 16735843 intergenic not near genes chr3R 16735942 intergenic not near genes chr3R 16736041 intergenic not near genes chr3R_4_16735001 chr3R_16735001 RAL-439 1683 chr3R 16797448 16797473 chr3R 16797557 16797603 5 115 0.0 5.0 2.5 1.4 155 chr3R 16797448 intergenic not near genes chr3R 16797526 intergenic not near genes chr3R 16797603 intergenic not near genes chr3R_5_16795001 chr3R_16795001 RAL-439 1684 chr3R 16889943 16889991 chr3R 16890040 16890068 7 88 1.0 2.0 1.5 2.8 125 chr3R 16889943 intron iab-8 - chr3R 16890006 intron iab-8 - chr3R 16890068 intron iab-8 - chr3R_7_16890001 chr3R_16890001 RAL-439 1685 chr3R 16961180 16961231 chr3R 16961289 16961318 18 103 4.5 5.5 5.0 3.0 138 chr3R 16961180 intron Abd-B - chr3R 16961249 intron Abd-B - chr3R 16961318 intron Abd-B - chr3R_18_16960001 chr3R_16960001 RAL-439 1686 chr3R 17121504 17121525 chr3R 17121719 17121733 7 213 10.0 2.0 6.0 1.0 229 chr3R 17121504 intron cher - chr3R 17121618 intron,exon cher -,CG42779 + chr3R 17121733 intron,exon cher -,CG42779 + chr3R_7_17120001 chr3R_17120001 RAL-439 1687 chr3R 17121527 17121554 chr3R 17121717 17121769 7 201 4.5 2.0 3.2 1.7 242 chr3R 17121527 intron cher - chr3R 17121648 intron,exon cher -,CG42779 + chr3R 17121769 intron,exon cher -,CG42779 + chr3R_7_17120001 chr3R_17120001 RAL-439 1688 chr3R 17132051 17132075 chr3R 17132131 17132175 4 94 2.0 1.5 1.8 1.4 124 chr3R 17132051 exon CG4053 - chr3R 17132113 exon CG4053 - chr3R 17132175 5` UTR CG4053 - chr3R_4_17130001 chr3R_17130001 RAL-439 1689 chr3R 17294647 17294705 chr3R 17295095 17295158 BS 9 448 0.5 0.0 0.2 7.5 511 chr3R 17294647 intergenic not near genes chr3R 17294902 intergenic not near genes chr3R 17295158 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-439 1690 chr3R 17346674 17346707 chr3R 17348257 17348290 F-element 7 1578 10.5 5.5 8.0 0.8 1616 chr3R 17346674 intron beat-IIa - chr3R 17347482 intron beat-IIa - chr3R 17348290 intron beat-IIa - chr3R_7_17345001 chr3R_17345001 RAL-439 1691 chr3R 17355490 17355499 chr3R 17355567 17355577 4 88 8.5 3.5 6.0 0.6 87 chr3R 17355490 intron beat-IIa - chr3R 17355534 intron beat-IIa - chr3R 17355577 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-439 1692 chr3R 17461178 17461231 chr3R 17461280 17461320 19 96 4.0 2.0 3.0 4.8 142 chr3R 17461178 intergenic not near genes chr3R 17461249 intergenic not near genes chr3R 17461320 intergenic not near genes chr3R_19_17460001 chr3R_17460001 RAL-439 1693 chr3R 17463236 17463283 chr3R 17463541 17463588 11 304 8.0 5.5 6.8 1.4 352 chr3R 17463236 intergenic not near genes chr3R 17463412 intergenic not near genes chr3R 17463588 intergenic not near genes chr3R_11_17460001 chr3R_17460001 RAL-439 1694 chr3R 17645682 17645725 chr3R 17645832 17645843 8 137 0.5 3.0 1.8 2.9 161 chr3R 17645682 intergenic CG43175 + chr3R 17645762 intergenic not near genes chr3R 17645843 intergenic not near genes chr3R_8_17645001 chr3R_17645001 RAL-439 1695 chr3R 17657651 17657661 chr3R 17657810 17657832 INE-1 4 168 0.5 1.5 1.0 2.0 181 chr3R 17657651 intron CG14322 + chr3R 17657742 intron CG14322 + chr3R 17657832 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-439 1696 chr3R 17773376 17773390 chr3R 17773476 17773490 4 100 2.5 2.0 2.2 1.2 114 chr3R 17773376 intron CG43102 - chr3R 17773433 intron CG43102 - chr3R 17773490 exon CG43102 - chr3R_4_17770001 chr3R_17770001 RAL-439 1697 chr3R 17823191 17823231 chr3R 17823296 17823308 11 98 6.5 4.5 5.5 1.7 117 chr3R 17823191 intron tinc + chr3R 17823250 intron tinc + chr3R 17823308 intron tinc + chr3R_11_17820001 chr3R_17820001 RAL-439 1698 chr3R 17899071 17899079 chr3R 17899169 17899177 4 98 10.5 6.0 8.2 0.4 106 chr3R 17899071 intron Rim - chr3R 17899124 intron Rim - chr3R 17899177 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-439 1699 chr3R 17925842 17925889 chr3R 17927323 17927336 hobo 6 1472 0.0 5.0 2.5 1.7 1494 chr3R 17925842 intron cpo + chr3R 17926589 intron cpo + chr3R 17927336 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-439 1700 chr3R 17976506 17976533 chr3R 17976603 17976630 13 95 2.0 11.0 6.5 1.7 124 chr3R 17976506 intron cpo + chr3R 17976568 intron cpo + chr3R 17976630 intron cpo + chr3R_13_17975001 chr3R_17975001 RAL-439 1701 chr3R 18025321 18025363 chr3R 18025412 18025456 10 97 1.0 3.0 2.0 3.3 135 chr3R 18025321 3` UTR CG7794 + chr3R 18025388 intergenic CG7794 + chr3R 18025456 intergenic CG7794 + chr3R_10_18025001 chr3R_18025001 RAL-439 1702 chr3R 18041745 18041774 chr3R 18041842 18041855 5 91 1.5 1.0 1.2 2.3 110 chr3R 18041745 intergenic not near genes chr3R 18041800 intergenic not near genes chr3R 18041855 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-439 1703 chr3R 18061549 18061613 chr3R 18063146 18063201 F-element 6 1590 0.0 0.0 0.0 6.0 1652 chr3R 18061549 intergenic not near genes chr3R 18062375 intergenic not near genes chr3R 18063201 intergenic not near genes chr3R_6_18060001 chr3R_18060001 RAL-439 1704 chr3R 18122878 18122886 chr3R 18122975 18122983 6 96 10.5 5.0 7.8 0.7 105 chr3R 18122878 intron sr + chr3R 18122930 intron sr + chr3R 18122983 intron sr + chr3R_6_18120001 chr3R_18120001 RAL-439 1705 chr3R 18302972 18302992 chr3R 18303096 18303115 6 123 2.0 0.5 1.2 2.7 143 chr3R 18302972 intergenic CG7126 -,PKD - chr3R 18303044 intergenic CG7126 -,PKD - chr3R 18303115 intergenic PKD -,CG7126 - chr3R_6_18300001 chr3R_18300001 RAL-439 1706 chr3R 18331763 18331790 chr3R 18333277 18333282 hopper2 8 1505 7.5 5.5 6.5 1.1 1519 chr3R 18331763 3` UTR CG15803 - chr3R 18332522 intron CG15803 - chr3R 18333282 3` UTR CG15803 - chr3R_8_18330001 chr3R_18330001 RAL-439 1707 chr3R 18352578 18352608 chr3R 18352686 18352705 5 108 7.0 4.0 5.5 0.8 127 chr3R 18352578 intron CG15803 - chr3R 18352642 intron CG15803 - chr3R 18352705 intron CG15803 - chr3R_5_18350001 chr3R_18350001 RAL-439 1708 chr3R 18603931 18603965 chr3R 18604028 18604052 17 93 4.5 8.0 6.2 2.4 121 chr3R 18603931 intron,intron qin +,CG14304 - chr3R 18603992 intron,intron qin +,CG14304 - chr3R 18604052 intron,intron qin +,CG14304 - chr3R_17_18600001 chr3R_18600001 RAL-439 1709 chr3R 18606493 18606532 chr3R 18610745 18610784 F-element 14 4251 3.0 12.0 7.5 1.6 4291 chr3R 18606493 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_14_18605001 chr3R_18605001 RAL-439 1710 chr3R 18618257 18618288 chr3R 18618362 18618365 7 101 2.5 3.0 2.8 1.8 108 chr3R 18618257 intron,intron qin +,CG14304 - chr3R 18618311 intron,intron qin +,CG14304 - chr3R 18618365 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-439 1711 chr3R 18628764 18628787 chr3R 18628860 18628883 6 94 2.0 5.5 3.8 1.2 119 chr3R 18628764 intron qin + chr3R 18628824 intron qin + chr3R 18628883 intron qin + chr3R_6_18625001 chr3R_18625001 RAL-439 1712 chr3R 18670369 18670387 chr3R 18670482 18670500 9 113 3.5 4.0 3.8 1.9 131 chr3R 18670369 intron CG7702 + chr3R 18670434 intron CG7702 + chr3R 18670500 intron CG7702 + chr3R_9_18670001 chr3R_18670001 RAL-439 1713 chr3R 18670391 18670411 chr3R 18670479 18670524 5 108 2.5 3.5 3.0 1.2 133 chr3R 18670391 intron CG7702 + chr3R 18670458 intron CG7702 + chr3R 18670524 intron CG7702 + chr3R_5_18670001 chr3R_18670001 RAL-439 1714 chr3R 18766766 18766808 chr3R 18766854 18766906 17 88 5.5 2.5 4.0 3.4 140 chr3R 18766766 intron CG7720 - chr3R 18766836 intron CG7720 - chr3R 18766906 intron CG7720 - chr3R_17_18765001 chr3R_18765001 RAL-439 1715 chr3R 18916196 18916225 chr3R 18916461 18916500 19 271 6.0 6.0 6.0 2.7 304 chr3R 18916196 intron Xrp1 + chr3R 18916348 intron Xrp1 + chr3R 18916500 intron Xrp1 + chr3R_19_18915001 chr3R_18915001 RAL-439 1716 chr3R 19136406 19136407 chr3R 19139783 19139808 Bari1 6 3378 23.0 32.5 27.8 0.2 3402 chr3R 19136406 exon Cyp12a4 + chr3R 19138107 intergenic not near genes chr3R 19139808 3` UTR Ppcs - chr3R_6_19135001 chr3R_19135001 RAL-439 1717 chr3R 19201263 19201282 chr3R 19201370 19201384 10 105 7.0 4.0 5.5 1.5 121 chr3R 19201263 intergenic CG31475 + chr3R 19201324 intergenic CG31475 + chr3R 19201384 intergenic CG31475 + chr3R_10_19200001 chr3R_19200001 RAL-439 1718 chr3R 19201286 19201296 chr3R 19201363 19201403 5 101 5.5 2.5 4.0 1.0 117 chr3R 19201286 intergenic CG31475 + chr3R 19201344 intergenic CG31475 + chr3R 19201403 intergenic CG31475 + chr3R_5_19200001 chr3R_19200001 RAL-439 1719 chr3R 19340379 19340387 chr3R 19340475 19340482 4 96 8.5 5.0 6.8 0.5 103 chr3R 19340379 intergenic not near genes chr3R 19340430 intergenic not near genes chr3R 19340482 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-439 1720 chr3R 19340393 19340430 chr3R 19340474 19340527 18 93 5.0 5.0 5.0 3.0 134 chr3R 19340393 intergenic not near genes chr3R 19340460 intergenic not near genes chr3R 19340527 intergenic not near genes chr3R_18_19340001 chr3R_19340001 RAL-439 1721 chr3R 19344654 19344697 chr3R 19344809 19344852 13 154 7.5 9.0 8.2 1.4 198 chr3R 19344654 intergenic not near genes chr3R 19344753 intergenic not near genes chr3R 19344852 intergenic not near genes chr3R_13_19340001 chr3R_19340001 RAL-439 1722 chr3R 19533271 19533318 chr3R 19533366 19533398 13 93 1.0 1.0 1.0 6.5 127 chr3R 19533271 intron Dys + chr3R 19533334 intron Dys + chr3R 19533398 intron Dys + chr3R_13_19530001 chr3R_19530001 RAL-439 1723 chr3R 19544472 19544510 chr3R 19544580 19544630 7 115 3.5 2.0 2.8 1.8 158 chr3R 19544472 intron Dys + chr3R 19544551 intron Dys + chr3R 19544630 intron Dys + chr3R_7_19540001 chr3R_19540001 RAL-439 1724 chr3R 19564978 19564993 chr3R 19565070 19565092 7 94 2.5 4.5 3.5 1.6 114 chr3R 19564978 intron Dys + chr3R 19565035 intron Dys + chr3R 19565092 intron Dys + chr3R_7_19565001 chr3R_19565001 RAL-439 1725 chr3R 19570300 19570340 chr3R 19570388 19570416 13 92 1.5 7.0 4.2 2.5 116 chr3R 19570300 intron Dys + chr3R 19570358 intron Dys + chr3R 19570416 intron Dys + chr3R_13_19570001 chr3R_19570001 RAL-439 1726 chr3R 19602756 19602786 chr3R 19602839 19602859 9 88 8.0 4.0 6.0 1.3 103 chr3R 19602756 intergenic CG7333 + chr3R 19602808 intergenic CG7333 + chr3R 19602859 intergenic CG7333 + chr3R_9_19600001 chr3R_19600001 RAL-439 1727 chr3R 19827506 19827548 chr3R 19827612 19827653 8 105 4.0 1.5 2.8 2.1 147 chr3R 19827506 intron bnl - chr3R 19827580 intron bnl - chr3R 19827653 exon bnl - chr3R_8_19825001 chr3R_19825001 RAL-439 1728 chr3R 19908280 19908299 chr3R 19908377 19908403 4 101 0.0 2.0 1.0 2.0 123 chr3R 19908280 intron RhoGAP92B + chr3R 19908342 intron RhoGAP92B + chr3R 19908403 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_4_19905001 chr3R_19905001 RAL-439 1729 chr3R 19913993 19914006 chr3R 19914106 19914118 7 112 15.0 7.5 11.2 0.6 125 chr3R 19913993 3` UTR RhoGAP92B + chr3R 19914056 3` UTR RhoGAP92B + chr3R 19914118 3` UTR RhoGAP92B + chr3R_7_19910001 chr3R_19910001 RAL-439 1730 chr3R 19914009 19914045 chr3R 19914105 19914158 18 107 7.5 7.0 7.2 2.2 149 chr3R 19914009 3` UTR RhoGAP92B + chr3R 19914084 3` UTR RhoGAP92B + chr3R 19914158 3` UTR RhoGAP92B + chr3R_18_19910001 chr3R_19910001 RAL-439 1731 chr3R 19990821 19990862 chr3R 19990964 19991015 13 143 7.0 2.0 4.5 2.4 194 chr3R 19990821 intron Hs6st - chr3R 19990918 intron Hs6st - chr3R 19991015 intron Hs6st - chr3R_13_19990001 chr3R_19990001 RAL-439 1732 chr3R 20060627 20060637 chr3R 20060730 20060740 4 99 7.0 2.5 4.8 0.7 113 chr3R 20060627 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060740 intergenic not near genes chr3R_4_20060001 chr3R_20060001 RAL-439 1733 chr3R 20109540 20109571 chr3R 20114749 20114776 copia 6 5213 2.0 4.0 3.0 1.5 5236 chr3R 20109540 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-439 1734 chr3R 20132960 20132993 chr3R 20133056 20133058 6 88 4.0 0.0 2.0 2.0 98 chr3R 20132960 intergenic not near genes chr3R 20133009 intergenic not near genes chr3R 20133058 intergenic not near genes chr3R_6_20130001 chr3R_20130001 RAL-439 1735 chr3R 20156703 20156721 chr3R 20165858 20165871 roo 7 9159 5.0 4.5 4.8 1.2 9168 chr3R 20156703 intergenic not near genes chr3R 20161287 intergenic not near genes chr3R 20165871 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-439 1736 chr3R 20205390 20205591 chr3R 20205527 20205717 16 133 0.0 1.0 0.5 10.7 327 chr3R 20205390 intron Nlg4 + chr3R 20205554 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_16_20205001 chr3R_20205001 RAL-439 1737 chr3R 20245264 20245298 chr3R 20248894 20248928 F-element 6 3627 12.0 1.5 6.8 0.8 3664 chr3R 20245264 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248928 intergenic not near genes chr3R_6_20245001 chr3R_20245001 RAL-439 1738 chr3R 20252203 20252253 chr3R 20252301 20252351 19 95 5.5 1.0 3.2 4.5 148 chr3R 20252203 intergenic not near genes chr3R 20252277 intergenic cic + chr3R 20252351 intergenic cic + chr3R_19_20250001 chr3R_20250001 RAL-439 1739 chr3R 20256854 20256868 chr3R 20256952 20256956 7 96 0.0 6.5 3.2 1.7 102 chr3R 20256854 intron cic + chr3R 20256905 intron cic + chr3R 20256956 intron cic + chr3R_7_20255001 chr3R_20255001 RAL-439 1740 chr3R 20266502 20266521 chr3R 20272993 20273012 Burdock 11 6490 4.0 5.0 4.5 2.0 6510 chr3R 20266502 intron cic + chr3R 20269757 intron cic + chr3R 20273012 intron cic + chr3R_11_20265001 chr3R_20265001 RAL-439 1741 chr3R 20266522 20266544 chr3R 20272991 20273035 Burdock 5 6484 4.0 4.5 4.2 1.0 6513 chr3R 20266522 intron cic + chr3R 20269778 intron cic + chr3R 20273035 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-439 1742 chr3R 20282273 20282310 chr3R 20282369 20282406 15 91 0.5 3.0 1.8 5.4 133 chr3R 20282273 intron cic + chr3R 20282340 intron cic + chr3R 20282406 intron cic + chr3R_15_20280001 chr3R_20280001 RAL-439 1743 chr3R 20308168 20308217 chr3R 20308276 20308336 8 104 5.5 0.0 2.8 2.1 168 chr3R 20308168 intergenic not near genes chr3R 20308252 intergenic not near genes chr3R 20308336 intergenic not near genes chr3R_8_20305001 chr3R_20305001 RAL-439 1744 chr3R 20312843 20312883 chr3R 20312944 20312989 18 98 5.0 3.0 4.0 3.6 146 chr3R 20312843 intron CG42668 + chr3R 20312916 intron CG42668 + chr3R 20312989 intron CG42668 + chr3R_18_20310001 chr3R_20310001 RAL-439 1745 chr3R 20330989 20330996 chr3R 20331495 20331502 roo 6 506 13.0 8.5 10.8 0.5 513 chr3R 20330989 intergenic Sirt2 + chr3R 20331246 intergenic Sirt2 + chr3R 20331502 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-439 1746 chr3R 20331002 20331025 chr3R 20331483 20331511 roo 10 497 7.5 5.0 6.2 1.4 509 chr3R 20331002 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331511 intergenic not near genes chr3R_10_20330001 chr3R_20330001 RAL-439 1747 chr3R 20406486 20406514 chr3R 20406589 20406633 7 107 6.0 0.0 3.0 1.8 147 chr3R 20406486 intron Gfrl - chr3R 20406560 intron Gfrl - chr3R 20406633 intron,3` UTR Gfrl -,CG4335 - chr3R_7_20405001 chr3R_20405001 RAL-439 1748 chr3R 20512983 20513033 chr3R 20515706 20515756 opus 9 2723 4.5 0.0 2.2 2.8 2773 chr3R 20512983 intergenic not near genes chr3R 20514370 intergenic not near genes chr3R 20515756 intergenic not near genes chr3R_9_20510001 chr3R_20510001 RAL-439 1749 chr3R 20594464 20594512 chr3R 20594572 20594621 6 105 6.5 0.0 3.2 1.4 157 chr3R 20594464 intron bon + chr3R 20594542 intron bon + chr3R 20594621 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-439 1750 chr3R 20596182 20596198 chr3R 20596289 20596305 11 106 7.0 6.0 6.5 1.5 123 chr3R 20596182 intron bon + chr3R 20596244 intron bon + chr3R 20596305 intron bon + chr3R_11_20595001 chr3R_20595001 RAL-439 1751 chr3R 20596206 20596212 chr3R 20596278 20596319 4 93 6.0 4.0 5.0 0.7 113 chr3R 20596206 intron bon + chr3R 20596262 intron bon + chr3R 20596319 intron bon + chr3R_4_20595001 chr3R_20595001 RAL-439 1752 chr3R 20870253 20870268 chr3R 20870340 20870343 4 93 3.0 3.0 3.0 1.0 90 chr3R 20870253 intergenic not near genes chr3R 20870298 intergenic not near genes chr3R 20870343 intergenic not near genes chr3R_4_20870001 chr3R_20870001 RAL-439 1753 chr3R 20878250 20878267 chr3R 20878477 20878479 7 226 3.0 1.0 2.0 2.3 229 chr3R 20878250 exon TotZ + chr3R 20878364 intergenic TotZ +,CR44048 - chr3R 20878479 3` UTR CR44048 - chr3R_7_20875001 chr3R_20875001 RAL-439 1754 chr3R 20929262 20929314 chr3R 20929373 20929384 19 106 4.5 8.5 6.5 2.5 122 chr3R 20929262 intron CG31191 - chr3R 20929323 intron CG31191 - chr3R 20929384 intron CG31191 - chr3R_19_20925001 chr3R_20925001 RAL-439 1755 chr3R 20966123 20966132 chr3R 20966226 20966235 4 103 0.5 8.0 4.2 0.8 112 chr3R 20966123 intron Atpalpha + chr3R 20966179 intron Atpalpha + chr3R 20966235 intron Atpalpha + chr3R_4_20965001 chr3R_20965001 RAL-439 1756 chr3R 20966136 20966157 chr3R 20966219 20966260 11 96 0.5 8.0 4.2 2.1 124 chr3R 20966136 intron Atpalpha + chr3R 20966198 intron Atpalpha + chr3R 20966260 intron Atpalpha + chr3R_11_20965001 chr3R_20965001 RAL-439 1757 chr3R 21014000 21014017 chr3R 21014092 21014111 7 93 9.5 5.5 7.5 0.8 111 chr3R 21014000 3` UTR Calx + chr3R 21014056 3` UTR Calx + chr3R 21014111 3` UTR Calx + chr3R_7_21010001 chr3R_21010001 RAL-439 1758 chr3R 21014018 21014030 chr3R 21014090 21014128 7 87 8.0 5.5 6.8 0.9 110 chr3R 21014018 3` UTR Calx + chr3R 21014073 3` UTR Calx + chr3R 21014128 3` UTR Calx + chr3R_7_21010001 chr3R_21010001 RAL-439 1759 chr3R 21014034 21014043 chr3R 21014086 21014121 6 68 5.0 5.0 5.0 1.0 87 chr3R 21014034 3` UTR Calx + chr3R 21014078 3` UTR Calx + chr3R 21014121 3` UTR Calx + chr3R_6_21010001 chr3R_21010001 RAL-439 1760 chr3R 21020404 21020424 chr3R 21020476 21020509 10 87 13.0 7.5 10.2 0.9 105 chr3R 21020404 3` UTR Rlip + chr3R 21020456 3` UTR Rlip + chr3R 21020509 3` UTR Rlip + chr3R_10_21020001 chr3R_21020001 RAL-439 1761 chr3R 21076330 21076332 chr3R 21076419 21076424 4 91 0.5 5.5 3.0 1.0 94 chr3R 21076330 exon dmrt93B + chr3R 21076377 intron dmrt93B + chr3R 21076424 intron dmrt93B + chr3R_4_21075001 chr3R_21075001 RAL-439 1762 chr3R 21129805 21130018 chr3R 21129914 21130115 23 93 0.5 0.0 0.2 19.2 310 chr3R 21129805 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129960 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130115 intergenic Ice2 +,Obp93a - chr3R_23_21125001 chr3R_21125001 RAL-439 1763 chr3R 21132612 21132649 chr3R 21132715 21132752 5 103 2.5 0.0 1.2 2.3 140 chr3R 21132612 3` UTR Ice2 + chr3R 21132682 3` UTR Ice2 + chr3R 21132752 3` UTR CG7009 - chr3R_5_21130001 chr3R_21130001 RAL-439 1764 chr3R 21154540 21154581 chr3R 21154754 21154816 8 230 4.0 0.0 2.0 2.7 276 chr3R 21154540 intron SNF4Agamma + chr3R 21154678 intron SNF4Agamma + chr3R 21154816 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-439 1765 chr3R 21188371 21188416 chr3R 21188468 21188496 7 86 1.5 1.5 1.5 2.8 125 chr3R 21188371 intron SNF4Agamma + chr3R 21188434 intron SNF4Agamma + chr3R 21188496 intron SNF4Agamma + chr3R_7_21185001 chr3R_21185001 RAL-439 1766 chr3R 21189674 21189716 chr3R 21189771 21189814 7 90 5.5 3.5 4.5 1.3 140 chr3R 21189674 intron SNF4Agamma + chr3R 21189744 intron SNF4Agamma + chr3R 21189814 intron SNF4Agamma + chr3R_7_21185001 chr3R_21185001 RAL-439 1767 chr3R 21240447 21240478 chr3R 21240546 21240561 11 102 1.0 3.0 2.0 3.7 114 chr3R 21240447 intergenic not near genes chr3R 21240504 intergenic not near genes chr3R 21240561 intergenic not near genes chr3R_11_21240001 chr3R_21240001 RAL-439 1768 chr3R 21245834 21245865 chr3R 21245937 21245964 12 103 6.0 5.0 5.5 1.8 130 chr3R 21245834 intergenic CG5892 + chr3R 21245899 intergenic CG5892 + chr3R 21245964 intergenic not near genes chr3R_12_21245001 chr3R_21245001 RAL-439 1769 chr3R 21321489 21321528 chr3R 21321605 21321623 10 108 1.5 2.5 2.0 3.3 134 chr3R 21321489 intron CG16791 - chr3R 21321556 intron CG16791 - chr3R 21321623 intron CG16791 - chr3R_10_21320001 chr3R_21320001 RAL-439 1770 chr3R 21464387 21464429 chr3R 21464493 21464533 9 103 2.0 2.5 2.2 2.8 146 chr3R 21464387 intergenic not near genes chr3R 21464460 intergenic not near genes chr3R 21464533 intergenic not near genes chr3R_9_21460001 chr3R_21460001 RAL-439 1771 chr3R 21481371 21481374 chr3R 21481482 21481485 4 111 13.0 0.0 6.5 0.5 114 chr3R 21481371 intergenic not near genes chr3R 21481428 intergenic not near genes chr3R 21481485 intergenic not near genes chr3R_4_21480001 chr3R_21480001 RAL-439 1772 chr3R 21519966 21520133 chr3R 21520087 21520247 19 118 3.0 2.5 2.8 5.0 281 chr3R 21519966 intergenic not near genes chr3R 21520106 intergenic not near genes chr3R 21520247 intergenic not near genes chr3R_19_21520001 chr3R_21520001 RAL-439 1773 chr3R 21725666 21725674 chr3R 21725816 21725830 8 155 0.5 9.0 4.8 1.4 164 chr3R 21725666 intergenic not near genes chr3R 21725748 intergenic not near genes chr3R 21725830 intergenic not near genes chr3R_8_21725001 chr3R_21725001 RAL-439 1774 chr3R 21820451 21820491 chr3R 21820578 21820593 5 114 1.5 5.0 3.2 1.2 142 chr3R 21820451 intron CASK - chr3R 21820522 intron CASK - chr3R 21820593 intron CASK - chr3R_5_21820001 chr3R_21820001 RAL-439 1775 chr3R 21903614 21903629 chr3R 21903731 21903746 5 117 0.0 2.5 1.2 2.3 132 chr3R 21903614 intron CG6678 + chr3R 21903680 intron CG6678 + chr3R 21903746 intron CG6678 + chr3R_5_21900001 chr3R_21900001 RAL-439 1776 chr3R 21920409 21920423 chr3R 21920501 21920503 4 88 2.5 1.0 1.8 1.4 94 chr3R 21920409 intergenic not near genes chr3R 21920456 intergenic not near genes chr3R 21920503 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-439 1777 chr3R 21937210 21937229 chr3R 21937307 21937326 8 96 2.5 4.0 3.2 1.9 116 chr3R 21937210 intergenic not near genes chr3R 21937268 intergenic not near genes chr3R 21937326 intergenic not near genes chr3R_8_21935001 chr3R_21935001 RAL-439 1778 chr3R 21985227 21985262 chr3R 21985352 21985379 6 121 3.0 3.5 3.2 1.4 152 chr3R 21985227 intron Eip93F + chr3R 21985303 intron Eip93F + chr3R 21985379 intron Eip93F + chr3R_6_21985001 chr3R_21985001 RAL-439 1779 chr3R 22234664 22234715 chr3R 22236003 22236054 pogo 14 1331 1.0 5.5 3.2 3.3 1390 chr3R 22234664 intron SKIP + chr3R 22235359 intron SKIP + chr3R 22236054 intron SKIP + chr3R_14_22235001 chr3R_22235001 RAL-439 1780 chr3R 22239477 22239522 chr3R 22248557 22248590 roo 6 9073 6.0 0.0 3.0 1.5 9113 chr3R 22239477 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248590 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-439 1781 chr3R 22348505 22348526 chr3R 22349249 22349290 4 758 9.0 2.5 5.8 0.6 785 chr3R 22348505 intergenic not near genes chr3R 22348898 intergenic not near genes chr3R 22349290 intergenic not near genes chr3R_4_22345001 chr3R_22345001 RAL-439 1782 chr3R 22433091 22433099 chr3R 22433195 22433209 5 111 6.5 8.0 7.2 0.6 118 chr3R 22433091 intron CG13847 - chr3R 22433150 intron CG13847 - chr3R 22433209 intron CG13847 - chr3R_5_22430001 chr3R_22430001 RAL-439 1783 chr3R 22769074 22769126 chr3R 22769169 22769223 17 89 3.5 2.0 2.8 4.5 149 chr3R 22769074 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769148 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769223 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_17_22765001 chr3R_22765001 RAL-439 1784 chr3R 22797889 22797932 chr3R 22798005 22798037 12 110 3.5 1.0 2.2 3.8 148 chr3R 22797889 intergenic not near genes chr3R 22797963 intergenic not near genes chr3R 22798037 intergenic not near genes chr3R_12_22795001 chr3R_22795001 RAL-439 1785 chr3R 22829788 22829811 chr3R 22829890 22829902 8 99 6.0 2.0 4.0 1.6 114 chr3R 22829788 intergenic not near genes chr3R 22829845 intergenic not near genes chr3R 22829902 intergenic not near genes chr3R_8_22825001 chr3R_22825001 RAL-439 1786 chr3R 22829812 22829817 chr3R 22829873 22829904 4 87 5.5 1.5 3.5 0.9 92 chr3R 22829812 intergenic not near genes chr3R 22829858 intergenic not near genes chr3R 22829904 intergenic not near genes chr3R_4_22825001 chr3R_22825001 RAL-439 1787 chr3R 22860145 22860166 chr3R 22860249 22860278 5 108 3.0 0.0 1.5 2.0 133 chr3R 22860145 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860278 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-439 1788 chr3R 22871423 22871457 chr3R 22871566 22871610 6 142 0.0 2.5 1.2 2.7 187 chr3R 22871423 intergenic not near genes chr3R 22871516 intergenic not near genes chr3R 22871610 intergenic not near genes chr3R_6_22870001 chr3R_22870001 RAL-439 1789 chr3R 22953833 22953856 chr3R 22954482 22954493 6 660 1.0 0.0 0.5 4.0 660 chr3R 22953833 intron klg + chr3R 22954163 intron klg + chr3R 22954493 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-439 1790 chr3R 23197940 23197970 chr3R 23198039 23198057 11 97 6.0 4.0 5.0 1.8 117 chr3R 23197940 exon cnc - chr3R 23197998 intron cnc - chr3R 23198057 intron cnc - chr3R_11_23195001 chr3R_23195001 RAL-439 1791 chr3R 23260969 23260990 chr3R 23261037 23261093 8 70 3.0 3.0 3.0 2.0 124 chr3R 23260969 3` UTR orb - chr3R 23261031 3` UTR orb - chr3R 23261093 3` UTR orb - chr3R_8_23260001 chr3R_23260001 RAL-439 1792 chr3R 23319660 23319674 chr3R 23319753 23319772 6 96 0.0 7.0 3.5 1.3 112 chr3R 23319660 intron pnt - chr3R 23319716 intron pnt - chr3R 23319772 intron pnt - chr3R_6_23315001 chr3R_23315001 RAL-439 1793 chr3R 23324006 23324013 chr3R 23324112 23324113 7 105 10.5 4.0 7.2 0.9 107 chr3R 23324006 intron pnt - chr3R 23324060 intron pnt - chr3R 23324113 intron pnt - chr3R_7_23320001 chr3R_23320001 RAL-439 1794 chr3R 23324014 23324056 chr3R 23324110 23324162 19 99 4.5 4.0 4.2 3.7 148 chr3R 23324014 intron pnt - chr3R 23324088 intron pnt - chr3R 23324162 intron pnt - chr3R_19_23320001 chr3R_23320001 RAL-439 1795 chr3R 23346820 23346870 chr3R 23346918 23346968 9 94 1.5 4.0 2.8 2.4 148 chr3R 23346820 intergenic not near genes chr3R 23346894 intergenic not near genes chr3R 23346968 intergenic not near genes chr3R_9_23345001 chr3R_23345001 RAL-439 1796 chr3R 23356980 23357009 chr3R 23357086 23357115 4 100 3.0 7.0 5.0 0.7 135 chr3R 23356980 intron Sec13 + chr3R 23357048 intron Sec13 + chr3R 23357115 intron Sec13 + chr3R_4_23355001 chr3R_23355001 RAL-439 1797 chr3R 23550071 23550120 chr3R 23550186 23550235 7 113 7.5 0.5 4.0 1.4 164 chr3R 23550071 intergenic not near genes chr3R 23550153 intergenic not near genes chr3R 23550235 intergenic not near genes chr3R_7_23550001 chr3R_23550001 RAL-439 1798 chr3R 23558381 23558397 chr3R 23560182 23560195 Bari1 5 1799 9.5 0.5 5.0 0.8 1814 chr3R 23558381 intron beat-IV + chr3R 23559288 intron beat-IV + chr3R 23560195 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-439 1799 chr3R 23564421 23564472 chr3R 23564585 23564600 16 151 3.5 4.0 3.8 3.3 179 chr3R 23564421 intron beat-IV + chr3R 23564510 intron beat-IV + chr3R 23564600 intron beat-IV + chr3R_16_23560001 chr3R_23560001 RAL-439 1800 chr3R 23650237 23650271 chr3R 23650376 23650400 8 138 1.5 0.5 1.0 4.0 163 chr3R 23650237 intron CG31145 - chr3R 23650318 intron CG31145 - chr3R 23650400 intron CG31145 - chr3R_8_23650001 chr3R_23650001 RAL-439 1801 chr3R 23662830 23662863 chr3R 23662975 23662982 4 129 3.5 5.0 4.2 0.8 152 chr3R 23662830 intron CG31145 - chr3R 23662906 intron CG31145 - chr3R 23662982 intron CG31145 - chr3R_4_23660001 chr3R_23660001 RAL-439 1802 chr3R 23662868 23662871 chr3R 23662967 23663015 4 119 2.0 4.0 3.0 1.0 147 chr3R 23662868 intron CG31145 - chr3R 23662942 intron CG31145 - chr3R 23663015 intron CG31145 - chr3R_4_23660001 chr3R_23660001 RAL-439 1803 chr3R 23808840 23808872 chr3R 23808923 23808965 5 86 0.5 2.5 1.5 2.0 125 chr3R 23808840 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808902 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808965 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_5_23805001 chr3R_23805001 RAL-439 1804 chr3R 23835395 23835433 chr3R 23844565 23844566 roo 17 9164 2.0 6.0 4.0 3.4 9171 chr3R 23835395 intron CG34355 + chr3R 23839980 intron CG34355 + chr3R 23844566 intron CG34355 + chr3R_17_23835001 chr3R_23835001 RAL-439 1805 chr3R 23851067 23851086 chr3R 23858754 23858773 opus 9 7685 5.0 19.0 12.0 0.7 7706 chr3R 23851067 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858773 intergenic not near genes chr3R_9_23850001 chr3R_23850001 RAL-439 1806 chr3R 23888064 23888106 chr3R 23888170 23888207 18 103 9.0 7.5 8.2 2.0 143 chr3R 23888064 intron Pli - chr3R 23888136 intron Pli - chr3R 23888207 intron Pli - chr3R_18_23885001 chr3R_23885001 RAL-439 1807 chr3R 23888107 23888114 chr3R 23888169 23888170 4 76 6.5 7.0 6.8 0.5 63 chr3R 23888107 intron Pli - chr3R 23888138 intron Pli - chr3R 23888170 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-439 1808 chr3R 23949030 23949070 chr3R 23949122 23949167 22 91 3.5 3.5 3.5 4.9 137 chr3R 23949030 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949167 intergenic not near genes chr3R_22_23945001 chr3R_23945001 RAL-439 1809 chr3R 24026174 24026210 chr3R 24026278 24026304 7 102 5.5 1.0 3.2 1.7 130 chr3R 24026174 intron KrT95D - chr3R 24026239 intron KrT95D - chr3R 24026304 intron KrT95D - chr3R_7_24025001 chr3R_24025001 RAL-439 1810 chr3R 24076902 24076943 chr3R 24078389 24078430 hobo 4 1484 1.5 2.0 1.8 1.4 1528 chr3R 24076902 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078430 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-439 1811 chr3R 24100437 24100477 chr3R 24100552 24100592 7 113 5.0 4.5 4.8 1.2 155 chr3R 24100437 intron 4EHP - chr3R 24100514 intron 4EHP - chr3R 24100592 intron 4EHP - chr3R_7_24100001 chr3R_24100001 RAL-439 1812 chr3R 24113746 24113978 chr3R 24113929 24114076 32 150 5.5 4.0 4.8 5.5 330 chr3R 24113746 intron Rootletin + chr3R 24113911 intron Rootletin + chr3R 24114076 intron,3` UTR Rootletin +,CG13607 - chr3R_32_24110001 chr3R_24110001 RAL-439 1813 chr3R 24199730 24199770 chr3R 24199830 24199870 11 92 1.0 3.0 2.0 3.7 140 chr3R 24199730 intron twin - chr3R 24199800 intron twin - chr3R 24199870 intron twin - chr3R_11_24195001 chr3R_24195001 RAL-439 1814 chr3R 24431590 24431625 chr3R 24431678 24431724 10 88 8.0 1.5 4.8 1.7 134 chr3R 24431590 intron nAChRalpha1 - chr3R 24431657 intron nAChRalpha1 - chr3R 24431724 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-439 1815 chr3R 24433471 24433500 chr3R 24433555 24433599 6 85 1.5 3.5 2.5 1.7 128 chr3R 24433471 intron nAChRalpha1 - chr3R 24433535 intron nAChRalpha1 - chr3R 24433599 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-439 1816 chr3R 24493268 24493308 chr3R 24493518 24493558 BS 7 247 6.5 6.5 6.5 0.9 290 chr3R 24493268 intergenic not near genes chr3R 24493413 intergenic not near genes chr3R 24493558 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-439 1817 chr3R 24527787 24527836 chr3R 24527898 24527915 12 105 6.0 4.0 5.0 2.0 128 chr3R 24527787 intergenic CG13618 +,CG6607 + chr3R 24527851 intergenic CG6607 +,CG13618 + chr3R 24527915 intergenic CG6607 +,CG13618 + chr3R_12_24525001 chr3R_24525001 RAL-439 1818 chr3R 24566351 24566363 chr3R 24566447 24566470 4 104 8.5 6.5 7.5 0.5 119 chr3R 24566351 intron CG13624 - chr3R 24566410 intron CG13624 - chr3R 24566470 intron CG13624 - chr3R_4_24565001 chr3R_24565001 RAL-439 1819 chr3R 24579345 24579371 chr3R 24579446 24579473 11 100 4.5 0.0 2.2 3.4 128 chr3R 24579345 intron CG13624 - chr3R 24579409 intron CG13624 - chr3R 24579473 intron CG13624 - chr3R_11_24575001 chr3R_24575001 RAL-439 1820 chr3R 24667603 24667622 chr3R 24667685 24667719 8 94 3.5 1.5 2.5 2.3 116 chr3R 24667603 intron slo + chr3R 24667661 intron slo + chr3R 24667719 intron slo + chr3R_8_24665001 chr3R_24665001 RAL-439 1821 chr3R 24670164 24670195 chr3R 24670269 24670270 10 96 4.5 3.0 3.8 2.1 106 chr3R 24670164 intron slo + chr3R 24670217 intron slo + chr3R 24670270 intron slo + chr3R_10_24670001 chr3R_24670001 RAL-439 1822 chr3R 24854868 24854910 chr3R 24854970 24855006 12 99 3.5 4.0 3.8 2.5 138 chr3R 24854868 3` UTR,3` UTR nct +,HdacX - chr3R 24854937 3` UTR HdacX - chr3R 24855006 3` UTR HdacX - chr3R_12_24850001 chr3R_24850001 RAL-439 1823 chr3R 24927111 24927132 chr3R 24931922 24931924 Doc 5 4807 9.0 3.0 6.0 0.7 4813 chr3R 24927111 intergenic Trf4-2 + chr3R 24929518 intergenic not near genes chr3R 24931924 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-439 1824 chr3R 24927133 24927151 chr3R 24931919 24931962 Doc 9 4799 7.0 3.0 5.0 1.5 4829 chr3R 24927133 intergenic Trf4-2 + chr3R 24929548 intergenic not near genes chr3R 24931962 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-439 1825 chr3R 25004896 25004905 chr3R 25004999 25005003 4 102 0.0 2.0 1.0 2.0 107 chr3R 25004896 intron tnc + chr3R 25004950 intron tnc + chr3R 25005003 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-439 1826 chr3R 25093119 25093159 chr3R 25093387 25093402 7 262 3.0 9.0 6.0 1.0 283 chr3R 25093119 intergenic not near genes chr3R 25093260 intergenic not near genes chr3R 25093402 intergenic not near genes chr3R_7_25090001 chr3R_25090001 RAL-439 1827 chr3R 25166237 25166393 chr3R 25166337 25166488 7 95 0.5 0.0 0.2 5.8 251 chr3R 25166237 intergenic not near genes chr3R 25166362 intergenic not near genes chr3R 25166488 intergenic not near genes chr3R_7_25165001 chr3R_25165001 RAL-439 1828 chr3R 25235798 25235837 chr3R 25235898 25235932 13 96 5.5 3.5 4.5 2.4 134 chr3R 25235798 intergenic CG10420 - chr3R 25235865 intergenic CG10420 - chr3R 25235932 intergenic CG10420 - chr3R_13_25235001 chr3R_25235001 RAL-439 1829 chr3R 25235843 25235847 chr3R 25235893 25235942 4 74 5.5 3.5 4.5 0.7 99 chr3R 25235843 intergenic CG10420 - chr3R 25235892 intergenic CG10420 - chr3R 25235942 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-439 1830 chr3R 25302134 25302154 chr3R 25302330 25302375 8 202 21.0 31.5 26.2 0.3 241 chr3R 25302134 exon CG13659 + chr3R 25302254 exon CG13659 + chr3R 25302375 intergenic CG13659 +,CG31370 + chr3R_8_25300001 chr3R_25300001 RAL-439 1831 chr3R 25368467 25368496 chr3R 25368605 25368621 8 133 5.0 0.5 2.8 2.1 154 chr3R 25368467 intron Fur1 - chr3R 25368544 intron Fur1 - chr3R 25368621 intron Fur1 - chr3R_8_25365001 chr3R_25365001 RAL-439 1832 chr3R 25512394 25512419 chr3R 25512478 25512498 5 91 7.0 3.5 5.2 0.8 104 chr3R 25512394 intergenic not near genes chr3R 25512446 intergenic not near genes chr3R 25512498 intergenic not near genes chr3R_5_25510001 chr3R_25510001 RAL-439 1833 chr3R 7773344 7773344 chr3R 25538124 25538124 5 17764780 19.0 9.0 14.0 0.3 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_5_16655001 chr3R_16655001 RAL-439 1834 chr3R 25591409 25591437 chr3R 25591485 25591535 8 95 2.5 0.0 1.2 3.6 126 chr3R 25591409 intron msi + chr3R 25591472 intron msi + chr3R 25591535 intron,3` UTR msi +,ymp - chr3R_8_25590001 chr3R_25590001 RAL-439 1835 chr3R 25608464 25608504 chr3R 25608565 25608626 10 111 2.5 0.0 1.2 4.5 162 chr3R 25608464 intron ymp - chr3R 25608545 intron ymp - chr3R 25608626 intron ymp - chr3R_10_25605001 chr3R_25605001 RAL-439 1836 chr3R 25671225 25671272 chr3R 25671343 25671376 8 114 2.0 0.0 1.0 4.0 151 chr3R 25671225 intron Lgr3 + chr3R 25671300 intron Lgr3 + chr3R 25671376 intron Lgr3 + chr3R_8_25670001 chr3R_25670001 RAL-439 1837 chr3R 25703173 25703208 chr3R 25703716 25703723 5 537 4.5 1.5 3.0 1.2 550 chr3R 25703173 intron LpR2 - chr3R 25703448 intron LpR2 - chr3R 25703723 intron LpR2 - chr3R_5_25700001 chr3R_25700001 RAL-439 1838 chr3R 25722538 25722563 chr3R 25722905 25722935 10 369 1.5 0.5 1.0 5.0 397 chr3R 25722538 exon LpR2 - chr3R 25722736 intron LpR2 - chr3R 25722935 intron LpR2 - chr3R_10_25720001 chr3R_25720001 RAL-439 1839 chr3R 25725814 25725833 chr3R 25734989 25734989 roo 8 9175 6.0 4.5 5.2 1.3 9175 chr3R 25725814 intron LpR2 - chr3R 25730402 intron LpR2 - chr3R 25734989 intron LpR2 - chr3R_8_25730001 chr3R_25730001 RAL-439 1840 chr3R 25738645 25738661 chr3R 25738718 25738769 12 84 1.5 4.0 2.8 3.2 124 chr3R 25738645 intron LpR2 - chr3R 25738707 intron LpR2 - chr3R 25738769 intron LpR2 - chr3R_12_25735001 chr3R_25735001 RAL-439 1841 chr3R 25814041 25814068 chr3R 25814138 25814150 4 90 2.0 6.0 4.0 0.8 109 chr3R 25814041 intergenic not near genes chr3R 25814096 intergenic not near genes chr3R 25814150 intergenic not near genes chr3R_4_25810001 chr3R_25810001 RAL-439 1842 chr3R 25843615 25843665 chr3R 25843765 25843815 18 147 2.0 4.5 3.2 4.3 200 chr3R 25843615 intergenic CR45653 + chr3R 25843715 intergenic CR45653 + chr3R 25843815 intergenic CR45653 + chr3R_18_25840001 chr3R_25840001 RAL-439 1843 chr3R 25846543 25846573 chr3R 25846636 25846672 5 88 6.0 4.5 5.2 0.8 129 chr3R 25846543 intergenic CR45654 +,CR45655 + chr3R 25846608 intergenic CR45655 +,CR45654 + chr3R 25846672 intergenic CR45655 +,CR45654 + chr3R_5_25845001 chr3R_25845001 RAL-439 1844 chr3R 25905619 25905657 chr3R 25905742 25905780 11 122 5.5 2.5 4.0 2.2 161 chr3R 25905619 intron CR43259 - chr3R 25905700 intron CR43259 - chr3R 25905780 intron CR43259 - chr3R_11_25905001 chr3R_25905001 RAL-439 1845 chr3R 25927498 25927538 chr3R 25927589 25927639 8 95 4.5 2.5 3.5 1.8 141 chr3R 25927498 intron CCAP-R - chr3R 25927568 intron CCAP-R - chr3R 25927639 intron CCAP-R - chr3R_8_25925001 chr3R_25925001 RAL-439 1846 chr3R 25962044 25962058 chr3R 25962160 25962174 4 115 3.5 7.0 5.2 0.6 130 chr3R 25962044 intron boss + chr3R 25962109 intron boss + chr3R 25962174 intron boss + chr3R_4_25960001 chr3R_25960001 RAL-439 1847 chr3R 25962062 25962076 chr3R 25962157 25962186 4 108 2.0 7.0 4.5 0.7 124 chr3R 25962062 intron boss + chr3R 25962124 intron boss + chr3R 25962186 intron boss + chr3R_4_25960001 chr3R_25960001 RAL-439 1848 chr3R 26038343 26038394 chr3R 26038449 26038496 4 104 6.5 4.0 5.2 0.6 153 chr3R 26038343 intergenic E(spl)m7-HLH + chr3R 26038420 intergenic E(spl)m7-HLH + chr3R 26038496 intergenic E(spl)m7-HLH + chr3R_4_26035001 chr3R_26035001 RAL-439 1849 chr3R 26038949 26038968 chr3R 26039106 26039125 6 156 4.5 3.5 4.0 1.2 176 chr3R 26038949 intergenic not near genes chr3R 26039037 intergenic not near genes chr3R 26039125 intergenic not near genes chr3R_6_26035001 chr3R_26035001 RAL-439 1850 chr3R 26038969 26038998 chr3R 26039105 26039155 9 152 2.5 3.5 3.0 2.2 186 chr3R 26038969 intergenic not near genes chr3R 26039062 intergenic not near genes chr3R 26039155 intergenic not near genes chr3R_9_26035001 chr3R_26035001 RAL-439 1851 chr3R 26093836 26093856 chr3R 26093932 26093949 6 92 3.5 3.5 3.5 1.3 113 chr3R 26093836 intron dys - chr3R 26093892 intron dys - chr3R 26093949 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-439 1852 chr3R 26093859 26093870 chr3R 26093923 26093928 5 80 2.0 3.0 2.5 1.4 69 chr3R 26093859 intron dys - chr3R 26093894 intron dys - chr3R 26093928 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-439 1853 chr3R 26122446 26122476 chr3R 26122542 26122557 4 86 3.5 1.5 2.5 1.1 111 chr3R 26122446 intron CG31324 + chr3R 26122502 intron CG31324 + chr3R 26122557 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-439 1854 chr3R 26140515 26140532 chr3R 26140648 26140655 4 129 4.5 11.0 7.8 0.5 140 chr3R 26140515 intergenic not near genes chr3R 26140585 intergenic not near genes chr3R 26140655 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-439 1855 chr3R 26140533 26140542 chr3R 26140626 26140675 4 118 2.5 5.0 3.8 0.8 142 chr3R 26140533 intergenic not near genes chr3R 26140604 intergenic not near genes chr3R 26140675 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-439 1856 chr3R 26144426 26144474 chr3R 26144524 26144561 12 90 2.0 2.5 2.2 3.8 135 chr3R 26144426 intergenic not near genes chr3R 26144494 intergenic not near genes chr3R 26144561 intergenic not near genes chr3R_12_26140001 chr3R_26140001 RAL-439 1857 chr3R 26284224 26284253 chr3R 26284343 26284380 4 125 0.0 4.5 2.2 1.2 156 chr3R 26284224 intergenic not near genes chr3R 26284302 intergenic not near genes chr3R 26284380 intergenic not near genes chr3R_4_26280001 chr3R_26280001 RAL-439 1858 chr3R 26294714 26294746 chr3R 26294797 26294818 9 86 3.0 3.0 3.0 2.2 104 chr3R 26294714 intergenic not near genes chr3R 26294766 intergenic not near genes chr3R 26294818 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-439 1859 chr3R 26325361 26325398 chr3R 26325463 26325509 6 109 3.5 0.0 1.8 2.1 148 chr3R 26325361 intron CG33970 + chr3R 26325435 intron CG33970 + chr3R 26325509 intron CG33970 + chr3R_6_26325001 chr3R_26325001 RAL-439 1860 chr3R 26332879 26332913 chr3R 26332978 26332997 5 92 5.5 0.0 2.8 1.3 118 chr3R 26332879 intron CG33970 + chr3R 26332938 intron CG33970 + chr3R 26332997 intron CG33970 + chr3R_5_26330001 chr3R_26330001 RAL-439 1861 chr3R 26370317 26370362 chr3R 26370421 26370466 10 98 0.5 5.0 2.8 2.6 149 chr3R 26370317 intergenic not near genes chr3R 26370392 intergenic not near genes chr3R 26370466 intergenic not near genes chr3R_10_26370001 chr3R_26370001 RAL-439 1862 chr3R 26376342 26376358 chr3R 26385482 26385493 roo 8 9151 4.5 3.0 3.8 1.7 9151 chr3R 26376342 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385493 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-439 1863 chr3R 26405909 26405940 chr3R 26405995 26406011 11 88 2.0 2.0 2.0 3.7 102 chr3R 26405909 intergenic not near genes chr3R 26405960 intergenic not near genes chr3R 26406011 intergenic not near genes chr3R_11_26405001 chr3R_26405001 RAL-439 1864 chr3R 26456543 26456594 chr3R 26456687 26456719 16 140 3.0 2.0 2.5 4.6 176 chr3R 26456543 intergenic CG14237 +,Pdf - chr3R 26456631 intergenic CG14237 +,Pdf - chr3R 26456719 intergenic CG14237 + chr3R_16_26455001 chr3R_26455001 RAL-439 1865 chr3R 26510533 26510535 chr3R 26519583 26519605 roo 6 9058 4.5 4.0 4.2 1.2 9072 chr3R 26510533 intron plum - chr3R 26515069 intron plum - chr3R 26519605 intron,5` UTR plum -,CR45226 + chr3R_6_26515001 chr3R_26515001 RAL-439 1866 chr3R 26540984 26541030 chr3R 26541084 26541129 8 93 1.5 4.5 3.0 2.0 145 chr3R 26540984 intron scrib + chr3R 26541056 intron scrib + chr3R 26541129 intron scrib + chr3R_8_26540001 chr3R_26540001 RAL-439 1867 chr3R 26542059 26542072 chr3R 26542135 26542158 6 89 2.0 1.5 1.8 2.1 99 chr3R 26542059 intron scrib + chr3R 26542108 intron scrib + chr3R 26542158 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-439 1868 chr3R 26642735 26642759 chr3R 26643137 26643152 jockey 13 405 5.5 5.5 5.5 2.0 417 chr3R 26642735 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_13_26640001 chr3R_26640001 RAL-439 1869 chr3R 26668623 26668638 chr3R 26668698 26668731 5 87 6.5 2.0 4.2 1.0 108 chr3R 26668623 intron beat-VII - chr3R 26668677 intron beat-VII - chr3R 26668731 intron beat-VII - chr3R_5_26665001 chr3R_26665001 RAL-439 1870 chr3R 26685850 26685887 chr3R 26686035 26686047 10 185 1.5 3.5 2.5 2.9 197 chr3R 26685850 intergenic not near genes chr3R 26685948 intergenic not near genes chr3R 26686047 intergenic not near genes chr3R_10_26685001 chr3R_26685001 RAL-439 1871 chr3R 26810531 26810583 chr3R 26811036 26811058 roo 10 499 3.0 3.0 3.0 2.5 527 chr3R 26810531 intron Tl + chr3R 26810794 intron Tl + chr3R 26811058 intron Tl + chr3R_10_26810001 chr3R_26810001 RAL-439 1872 chr3R 26845558 26845596 chr3R 26845651 26845691 8 97 1.0 2.0 1.5 3.2 133 chr3R 26845558 intron Lerp - chr3R 26845624 intron Lerp - chr3R 26845691 intron Lerp - chr3R_8_26845001 chr3R_26845001 RAL-439 1873 chr3R 26901517 26901533 chr3R 26901622 26901633 5 102 7.5 0.0 3.8 1.0 116 chr3R 26901517 intron T48 + chr3R 26901575 intron T48 + chr3R 26901633 intron T48 + chr3R_5_26900001 chr3R_26900001 RAL-439 1874 chr3R 26945379 26945426 chr3R 26945479 26945526 11 95 4.0 3.5 3.8 2.3 147 chr3R 26945379 intergenic sda +,CG14252 + chr3R 26945452 intergenic CG14252 +,sda + chr3R 26945526 intergenic CG14252 +,sda + chr3R_11_26945001 chr3R_26945001 RAL-439 1875 chr3R 27007387 27007406 chr3R 27016542 27016561 roo 6 9155 11.5 3.0 7.2 0.7 9174 chr3R 27007387 intron RYa-R + chr3R 27011974 intron RYa-R + chr3R 27016561 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-439 1876 chr3R 27007407 27007436 chr3R 27016540 27016581 roo 16 9139 8.5 3.0 5.8 2.4 9174 chr3R 27007407 intron RYa-R + chr3R 27011994 intron RYa-R + chr3R 27016581 intron RYa-R + chr3R_16_27010001 chr3R_27010001 RAL-439 1877 chr3R 27027661 27027697 chr3R 27027765 27027768 9 94 9.0 2.0 5.5 1.4 107 chr3R 27027661 intron RYa-R + chr3R 27027714 intron RYa-R + chr3R 27027768 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-439 1878 chr3R 27028702 27028752 chr3R 27028801 27028836 14 96 3.5 2.0 2.8 3.7 134 chr3R 27028702 intron RYa-R + chr3R 27028769 intron RYa-R + chr3R 27028836 intron RYa-R + chr3R_14_27025001 chr3R_27025001 RAL-439 1879 chr3R 27041805 27041844 chr3R 27041915 27041924 13 106 4.0 5.5 4.8 2.2 119 chr3R 27041805 intron RYa-R + chr3R 27041864 intron RYa-R + chr3R 27041924 intron RYa-R + chr3R_13_27040001 chr3R_27040001 RAL-439 1880 chr3R 27140499 27140535 chr3R 27148129 27148165 412 8 7625 2.0 3.0 2.5 2.3 7666 chr3R 27140499 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148165 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-439 1881 chr3R 27317086 27317095 chr3R 27317180 27317193 4 94 4.0 1.5 2.8 1.1 107 chr3R 27317086 intron CG3339 - chr3R 27317140 intron CG3339 - chr3R 27317193 intron CG3339 - chr3R_4_27315001 chr3R_27315001 RAL-439 1882 chr3R 27329454 27329502 chr3R 27329551 27329559 18 91 2.0 5.0 3.5 4.0 105 chr3R 27329454 intergenic CG3330 - chr3R 27329506 intergenic CG3330 - chr3R 27329559 intergenic CG3330 - chr3R_18_27325001 chr3R_27325001 RAL-439 1883 chr3R 27342774 27342810 chr3R 27351375 27351411 Tirant 7 8599 1.0 4.0 2.5 2.0 8637 chr3R 27342774 intron CG42534 + chr3R 27347092 intron CG42534 + chr3R 27351411 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-439 1884 chr3R 27492359 27492407 chr3R 27492466 27492509 7 103 3.0 2.5 2.8 1.8 150 chr3R 27492359 intergenic not near genes chr3R 27492434 intergenic not near genes chr3R 27492509 intergenic not near genes chr3R_7_27490001 chr3R_27490001 RAL-439 1885 chr3R 27496571 27496604 chr3R 27496696 27496722 5 120 6.5 4.5 5.5 0.8 151 chr3R 27496571 intergenic not near genes chr3R 27496646 intergenic not near genes chr3R 27496722 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-439 1886 chr3R 27511231 27511283 chr3R 27511338 27511389 15 102 2.0 5.5 3.8 3.1 158 chr3R 27511231 intergenic not near genes chr3R 27511310 intergenic not near genes chr3R 27511389 intergenic not near genes chr3R_15_27510001 chr3R_27510001 RAL-439 1887 chr3R 27521146 27521183 chr3R 27530370 27530412 roo 21 9224 8.0 4.0 6.0 3.0 9266 chr3R 27521146 intron CG12885 + chr3R 27525779 intron CG12885 + chr3R 27530412 intron CG12885 + chr3R_21_27525001 chr3R_27525001 RAL-439 1888 chr3R 27619711 27619731 chr3R 27619818 27619856 6 111 2.0 3.0 2.5 1.7 145 chr3R 27619711 intron Tusp + chr3R 27619784 intron Tusp + chr3R 27619856 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-439 1889 chr3R 27725553 27725560 chr3R 27731010 27731012 I-element 4 5457 13.0 0.0 6.5 0.5 5459 chr3R 27725553 intergenic not near genes chr3R 27728282 intergenic not near genes chr3R 27731012 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-439 1890 chr3R 27779283 27779286 chr3R 27779348 27779380 4 86 0.0 2.0 1.0 2.0 97 chr3R 27779283 exon CG34353 - chr3R 27779332 intron CG34353 - chr3R 27779380 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-439 1891 chr3R 27856743 27856768 chr3R 27858246 27858271 hopper2 4 1502 12.5 7.0 9.8 0.4 1528 chr3R 27856743 intron CG34353 - chr3R 27857507 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-439 1892 chr3R 27856769 27856790 chr3R 27858242 27858293 hopper2 7 1497 7.5 7.0 7.2 0.9 1524 chr3R 27856769 intron CG34353 - chr3R 27857531 intron CG34353 - chr3R 27858293 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-439 1893 chr3R 27862934 27862979 chr3R 27868259 27868269 Transpac 6 5299 2.5 2.0 2.2 1.9 5335 chr3R 27862934 intron CG34353 - chr3R 27865602 intron CG34353 - chr3R 27868269 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-439 1894 chr3R 27875697 27875732 chr3R 27882756 27882782 297 15 7069 2.0 4.0 3.0 3.8 7085 chr3R 27875697 intron CG34353 - chr3R 27879240 intron CG34353 - chr3R 27882782 intron CG34353 - chr3R_15_27875001 chr3R_27875001 RAL-439 1895 chr3R 28068475 28068523 chr3R 28073937 28073964 I-element 5 5457 0.5 0.5 0.5 3.3 5489 chr3R 28068475 intron CG34362 + chr3R 28071220 intron CG34362 + chr3R 28073964 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-439 1896 chr3R 28173657 28173701 chr3R 28181107 28181136 mdg1 6 7446 5.0 4.0 4.5 1.1 7479 chr3R 28173657 intron CG34354 + chr3R 28177396 intron CG34354 + chr3R 28181136 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-439 1897 chr3R 28209957 28210005 chr3R 28210051 28210101 9 95 4.0 5.5 4.8 1.6 144 chr3R 28209957 intron CG34354 + chr3R 28210029 intron CG34354 + chr3R 28210101 intron CG34354 + chr3R_9_28210001 chr3R_28210001 RAL-439 1898 chr3R 28223238 28223269 chr3R 28223344 28223369 5 102 5.0 2.0 3.5 1.1 131 chr3R 28223238 intron CG34354 + chr3R 28223304 intron CG34354 + chr3R 28223369 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-439 1899 chr3R 28223271 28223284 chr3R 28223340 28223374 5 84 2.0 2.0 2.0 1.7 103 chr3R 28223271 intron CG34354 + chr3R 28223322 intron CG34354 + chr3R 28223374 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-439 1900 chr3R 28253350 28253368 chr3R 28255854 28255873 jockey 7 2509 2.0 1.5 1.8 2.5 2523 chr3R 28253350 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255873 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-439 1901 chr3R 28302088 28302127 chr3R 28302547 28302569 jockey 10 451 6.0 6.5 6.2 1.4 481 chr3R 28302088 intergenic not near genes chr3R 28302328 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_10_28300001 chr3R_28300001 RAL-439 1902 chr3R 28302130 28302134 chr3R 28302544 28302593 jockey 6 442 5.5 5.5 5.5 0.9 463 chr3R 28302130 intergenic not near genes chr3R 28302362 intergenic not near genes chr3R 28302593 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-439 1903 chr3R 28351958 28351991 chr3R 28352044 28352055 6 88 3.0 1.0 2.0 2.0 97 chr3R 28351958 intergenic Or98b + chr3R 28352006 intergenic Or98b + chr3R 28352055 intergenic Or98b + chr3R_6_28350001 chr3R_28350001 RAL-439 1904 chr3R 28393677 28393729 chr3R 28393797 28393848 16 117 2.0 1.0 1.5 6.4 171 chr3R 28393677 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393848 intergenic not near genes chr3R_16_28390001 chr3R_28390001 RAL-439 1905 chr3R 28478420 28478448 chr3R 28478495 28478549 6 88 2.5 2.0 2.2 1.9 129 chr3R 28478420 intergenic not near genes chr3R 28478484 intergenic not near genes chr3R 28478549 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-439 1906 chr3R 28480305 28480325 chr3R 28480406 28480421 5 100 1.5 5.5 3.5 1.1 116 chr3R 28480305 intergenic not near genes chr3R 28480363 intergenic not near genes chr3R 28480421 intergenic not near genes chr3R_5_28480001 chr3R_28480001 RAL-439 1907 chr3R 28484353 28484385 chr3R 28486251 28486292 28 1902 90.5 99.5 95.0 0.3 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_28_28485001 chr3R_28485001 RAL-439 1908 chr3R 28546948 28546990 chr3R 28547072 28547116 8 117 4.5 2.0 3.2 1.9 168 chr3R 28546948 intergenic not near genes chr3R 28547032 intergenic not near genes chr3R 28547116 intergenic not near genes chr3R_8_28545001 chr3R_28545001 RAL-439 1909 chr3R 28656767 28656800 chr3R 28657668 28657708 4 896 1.5 0.0 0.8 2.2 941 chr3R 28656767 intergenic not near genes chr3R 28657238 intergenic not near genes chr3R 28657708 intergenic not near genes chr3R_4_28655001 chr3R_28655001 RAL-439 1910 chr3R 28758304 28758311 chr3R 28771331 28771338 Stalker4 4 13027 4.0 3.5 3.8 0.8 13034 chr3R 28758304 intergenic aqrs - chr3R 28764821 intergenic not near genes chr3R 28771338 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-439 1911 chr3R 28763905 28763913 chr3R 28771341 28771376 Stalker4 5 7456 0.5 3.5 2.0 1.7 7471 chr3R 28763905 intergenic not near genes chr3R 28767640 intergenic not near genes chr3R 28771376 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-439 1912 chr3R 28830881 28830915 chr3R 28830969 28831013 7 91 5.5 6.5 6.0 1.0 132 chr3R 28830881 intron WASp - chr3R 28830947 intron WASp - chr3R 28831013 intron WASp - chr3R_7_28830001 chr3R_28830001 RAL-439 1913 chr3R 28882920 28882947 chr3R 28883048 28883077 12 131 1.0 1.5 1.2 5.5 157 chr3R 28882920 intron,3` UTR CG33203 -,CG14527 + chr3R 28882998 intron CG33203 - chr3R 28883077 intron CG33203 - chr3R_12_28880001 chr3R_28880001 RAL-439 1914 chr3R 28950240 28950277 chr3R 28950340 28950351 6 96 5.5 6.0 5.8 0.9 111 chr3R 28950240 intron CG14521 - chr3R 28950296 intron CG14521 - chr3R 28950351 intron CG14521 - chr3R_6_28950001 chr3R_28950001 RAL-439 1915 chr3R 29032756 29032769 chr3R 29032822 29032829 4 67 10.0 0.5 5.2 0.6 73 chr3R 29032756 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032792 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032829 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-439 1916 chr3R 29070035 29070077 chr3R 29070136 29070163 11 98 7.0 8.0 7.5 1.3 128 chr3R 29070035 intron CG11873 + chr3R 29070099 intron CG11873 + chr3R 29070163 intron CG11873 + chr3R_11_29070001 chr3R_29070001 RAL-439 1917 chr3R 29079372 29079405 chr3R 29080764 29080797 NOF 8 1391 6.0 3.5 4.8 1.4 1425 chr3R 29079372 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080797 intron CG11873 + chr3R_8_29080001 chr3R_29080001 RAL-439 1918 chr3R 29159105 29159145 chr3R 29159206 29159246 11 102 4.5 2.5 3.5 2.4 141 chr3R 29159105 intron CG11897 + chr3R 29159176 intron CG11897 + chr3R 29159246 intron CG11897 + chr3R_11_29155001 chr3R_29155001 RAL-439 1919 chr3R 29203830 29203851 chr3R 29203930 29203951 7 99 5.5 0.0 2.8 1.8 121 chr3R 29203830 5` UTR CG14508 - chr3R 29203890 intron CG14508 - chr3R 29203951 intron CG14508 - chr3R_7_29200001 chr3R_29200001 RAL-439 1920 chr3R 29213040 29213092 chr3R 29213143 29213163 14 96 1.5 2.5 2.0 4.7 123 chr3R 29213040 intergenic not near genes chr3R 29213102 intergenic not near genes chr3R 29213163 intergenic not near genes chr3R_14_29210001 chr3R_29210001 RAL-439 1921 chr3R 29237523 29237540 chr3R 29239411 29239431 7 1892 8.0 10.0 9.0 0.7 1908 chr3R 29237523 exon CG11951 - chr3R 29238477 intron CG11951 - chr3R 29239431 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-439 1922 chr3R 29249631 29249652 chr3R 29249711 29249759 11 95 1.5 4.5 3.0 2.8 128 chr3R 29249631 intron SP1029 - chr3R 29249695 intron SP1029 - chr3R 29249759 intron SP1029 - chr3R_11_29245001 chr3R_29245001 RAL-439 1923 chr3R 29256245 29256299 chr3R 29256345 29256389 17 92 0.5 2.5 1.5 6.8 144 chr3R 29256245 intergenic CG45544 +,stg - chr3R 29256317 intergenic CG45544 + chr3R 29256389 intergenic CG45544 + chr3R_17_29255001 chr3R_29255001 RAL-439 1924 chr3R 29264197 29264213 chr3R 29264299 29264330 6 116 0.5 3.0 1.8 2.1 133 chr3R 29264197 intergenic not near genes chr3R 29264264 intergenic not near genes chr3R 29264330 intergenic not near genes chr3R_6_29260001 chr3R_29260001 RAL-439 1925 chr3R 29319805 29319856 chr3R 29320144 29320160 jockey 11 332 5.0 3.0 4.0 2.2 355 chr3R 29319805 intergenic Cnx99A - chr3R 29319982 intergenic Cnx99A - chr3R 29320160 intergenic not near genes chr3R_11_29315001 chr3R_29315001 RAL-439 1926 chr3R 29332267 29332305 chr3R 29332363 29332402 16 94 4.0 4.0 4.0 3.2 135 chr3R 29332267 intergenic not near genes chr3R 29332334 intergenic not near genes chr3R 29332402 intergenic not near genes chr3R_16_29330001 chr3R_29330001 RAL-439 1927 chr3R 29362850 29362886 chr3R 29362951 29362985 11 103 0.5 6.0 3.2 2.6 135 chr3R 29362850 intergenic not near genes chr3R 29362918 intergenic not near genes chr3R 29362985 intergenic not near genes chr3R_11_29360001 chr3R_29360001 RAL-439 1928 chr3R 29406618 29406638 chr3R 29407899 29407934 jockey 6 1288 0.0 4.0 2.0 2.0 1316 chr3R 29406618 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407934 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-439 1929 chr3R 29433421 29433450 chr3R 29433514 29433548 4 91 3.0 0.5 1.8 1.4 127 chr3R 29433421 intron Ptp99A + chr3R 29433484 intron Ptp99A + chr3R 29433548 intron Ptp99A + chr3R_4_29430001 chr3R_29430001 RAL-439 1930 chr3R 29474423 29474463 chr3R 29474518 29474570 14 101 3.0 5.5 4.2 2.7 147 chr3R 29474423 intron Ptp99A + chr3R 29474496 intron Ptp99A + chr3R 29474570 intron Ptp99A + chr3R_14_29470001 chr3R_29470001 RAL-439 1931 chr3R 29505877 29505916 chr3R 29505974 29506013 5 95 4.0 3.0 3.5 1.1 136 chr3R 29505877 intergenic not near genes chr3R 29505945 intergenic not near genes chr3R 29506013 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-439 1932 chr3R 29516563 29516580 chr3R 29516655 29516659 5 86 7.0 3.5 5.2 0.8 96 chr3R 29516563 intergenic CG2014 + chr3R 29516611 intergenic CG2014 + chr3R 29516659 intergenic CG2014 + chr3R_5_29515001 chr3R_29515001 RAL-439 1933 chr3R 29516590 29516596 chr3R 29516654 29516656 4 69 3.0 3.5 3.2 1.0 66 chr3R 29516590 intergenic CG2014 + chr3R 29516623 intergenic CG2014 + chr3R 29516656 intergenic CG2014 + chr3R_4_29515001 chr3R_29515001 RAL-439 1934 chr3R 29539411 29539455 chr3R 29539507 29539517 4 86 5.0 0.0 2.5 1.1 106 chr3R 29539411 intergenic not near genes chr3R 29539464 intergenic not near genes chr3R 29539517 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-439 1935 chr3R 29655638 29655682 chr3R 29655737 29655766 6 94 1.5 1.5 1.5 2.4 128 chr3R 29655638 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655766 intron Dop1R2 - chr3R_6_29655001 chr3R_29655001 RAL-439 1936 chr3R 29854813 29854856 chr3R 29854912 29854945 7 91 1.5 3.5 2.5 2.0 132 chr3R 29854813 3` UTR dgt1 - chr3R 29854879 exon dgt1 - chr3R 29854945 exon dgt1 - chr3R_7_29850001 chr3R_29850001 RAL-439 1937 chr3R 29882009 29882052 chr3R 29891181 29891229 roo 12 9173 3.0 3.0 3.0 3.0 9220 chr3R 29882009 intron CG31038 + chr3R 29886619 intron CG31038 + chr3R 29891229 intron CG31038 + chr3R_12_29885001 chr3R_29885001 RAL-439 1938 chr3R 29963479 29963510 chr3R 29963601 29963613 5 114 0.5 3.5 2.0 1.7 134 chr3R 29963479 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963613 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-439 1939 chr3R 30059376 30059424 chr3R 30059482 30059519 13 104 5.0 0.0 2.5 3.7 143 chr3R 30059376 intron sima + chr3R 30059448 intron sima + chr3R 30059519 intron sima + chr3R_13_30055001 chr3R_30055001 RAL-439 1940 chr3R 30084867 30084877 chr3R 30086328 30086339 hobo 5 1467 0.5 4.5 2.5 1.4 1472 chr3R 30084867 intron sima + chr3R 30085603 intron sima + chr3R 30086339 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-439 1941 chr3R 30097472 30097654 chr3R 30097573 30097768 15 124 3.5 3.5 3.5 3.3 296 chr3R 30097472 intron sima + chr3R 30097620 intron sima + chr3R 30097768 intron sima + chr3R_15_30095001 chr3R_30095001 RAL-439 1942 chr3R 30147829 30147867 chr3R 30147935 30147948 19 100 1.5 5.5 3.5 4.2 119 chr3R 30147829 intron AdoR - chr3R 30147888 intron AdoR - chr3R 30147948 intron AdoR - chr3R_19_30145001 chr3R_30145001 RAL-439 1943 chr3R 30163345 30163379 chr3R 30163430 30163456 10 98 5.0 2.5 3.8 2.1 111 chr3R 30163345 intergenic not near genes chr3R 30163400 intergenic not near genes chr3R 30163456 intergenic not near genes chr3R_10_30160001 chr3R_30160001 RAL-439 1944 chr3R 30170753 30170789 chr3R 30170845 30170890 11 94 3.0 5.0 4.0 2.2 137 chr3R 30170753 intron CG31028 - chr3R 30170822 intron CG31028 - chr3R 30170890 intron CG31028 - chr3R_11_30170001 chr3R_30170001 RAL-439 1945 chr3R 30183197 30183245 chr3R 30183326 30183374 8 126 1.0 2.5 1.8 2.9 177 chr3R 30183197 intergenic not near genes chr3R 30183286 intergenic not near genes chr3R 30183374 intergenic CR44262 - chr3R_8_30180001 chr3R_30180001 RAL-439 1946 chr3R 30238756 30238787 chr3R 30239925 30239933 1360 4 1171 5.5 0.5 3.0 1.0 1177 chr3R 30238756 intergenic not near genes chr3R 30239344 intergenic not near genes chr3R 30239933 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-439 1947 chr3R 30276664 30276683 chr3R 30276764 30276778 7 103 5.5 1.5 3.5 1.6 114 chr3R 30276664 intergenic not near genes chr3R 30276721 intergenic not near genes chr3R 30276778 intergenic not near genes chr3R_7_30275001 chr3R_30275001 RAL-439 1948 chr3R 30351422 30351433 chr3R 30351500 30351527 4 92 7.5 5.5 6.5 0.5 105 chr3R 30351422 intron hdc + chr3R 30351474 intron hdc + chr3R 30351527 intron hdc + chr3R_4_30350001 chr3R_30350001 RAL-439 1949 chr3R 30375525 30375569 chr3R 30383170 30383214 412 7 7640 5.0 6.0 5.5 1.1 7689 chr3R 30375525 intergenic not near genes chr3R 30379370 intergenic not near genes chr3R 30383214 intergenic not near genes chr3R_7_30375001 chr3R_30375001 RAL-439 1950 chr3R 30396196 30396244 chr3R 30404482 30404517 roo 10 8279 2.0 2.5 2.2 3.1 8321 chr3R 30396196 intergenic not near genes chr3R 30400356 intergenic not near genes chr3R 30404517 5` UTR CR45570 + chr3R_10_30400001 chr3R_30400001 RAL-439 1951 chr3R 30445498 30445538 chr3R 30445602 30445650 22 109 3.5 8.5 6.0 3.1 152 chr3R 30445498 intergenic aralar1 -,Osi23 - chr3R 30445574 intergenic aralar1 - chr3R 30445650 3` UTR aralar1 - chr3R_22_30445001 chr3R_30445001 RAL-439 1952 chr3R 30448114 30448128 chr3R 30448187 30448226 4 92 5.5 0.0 2.8 1.1 112 chr3R 30448114 intron aralar1 - chr3R 30448170 intron aralar1 - chr3R 30448226 intron aralar1 - chr3R_4_30445001 chr3R_30445001 RAL-439 1953 chr3R 30480493 30480513 chr3R 30482941 30482951 jockey 5 2448 0.5 4.5 2.5 1.4 2458 chr3R 30480493 intron PH4alphaEFB + chr3R 30481722 intron PH4alphaEFB + chr3R 30482951 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-439 1954 chr3R 30498407 30498435 chr3R 30498615 30498644 11 216 0.5 5.0 2.8 2.9 237 chr3R 30498407 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498644 intron PH4alphaNE1 - chr3R_11_30495001 chr3R_30495001 RAL-439 1955 chr3R 30539708 30539741 chr3R 30540356 30540406 9 650 1.0 2.5 1.8 3.2 698 chr3R 30539708 intron tmod + chr3R 30540057 intron tmod + chr3R 30540406 intron tmod + chr3R_9_30540001 chr3R_30540001 RAL-439 1956 chr3R 30548990 30549034 chr3R 30549102 30549141 15 109 5.5 2.5 4.0 3.0 151 chr3R 30548990 intron tmod + chr3R 30549066 intron tmod + chr3R 30549141 intron tmod + chr3R_15_30545001 chr3R_30545001 RAL-439 1957 chr3R 30571681 30571704 chr3R 30571781 30571804 8 98 3.5 1.0 2.2 2.5 123 chr3R 30571681 intron tmod + chr3R 30571742 intron tmod + chr3R 30571804 intron tmod + chr3R_8_30570001 chr3R_30570001 RAL-439 1958 chr3R 30818792 30818845 chr3R 30820377 30820395 1360 15 1580 7.0 4.0 5.5 2.3 1603 chr3R 30818792 intron cindr + chr3R 30819594 intron cindr + chr3R 30820395 intron cindr + chr3R_15_30815001 chr3R_30815001 RAL-439 1959 chr3R 30859386 30859409 chr3R 30859484 30859507 4 98 9.0 2.5 5.8 0.6 121 chr3R 30859386 intergenic not near genes chr3R 30859446 intergenic not near genes chr3R 30859507 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-439 1960 chr3R 30859411 30859427 chr3R 30859483 30859525 7 90 6.0 2.0 4.0 1.4 114 chr3R 30859411 intergenic not near genes chr3R 30859468 intergenic not near genes chr3R 30859525 intergenic not near genes chr3R_7_30855001 chr3R_30855001 RAL-439 1961 chr3R 31042120 31042144 chr3R 31042202 31042236 8 98 3.5 3.5 3.5 1.8 116 chr3R 31042120 intron CanA1 + chr3R 31042178 intron CanA1 + chr3R 31042236 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-439 1962 chr3R 31074226 31074259 chr3R 31081839 31081852 springer 7 7611 1.0 3.5 2.2 2.2 7626 chr3R 31074226 intron Sox100B + chr3R 31078039 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-439 1963 chr3R 31084900 31084921 chr3R 31084995 31085002 5 93 4.0 3.5 3.8 1.0 102 chr3R 31084900 intergenic not near genes chr3R 31084951 intergenic not near genes chr3R 31085002 intergenic not near genes chr3R_5_31080001 chr3R_31080001 RAL-439 1964 chr3R 31137165 31137185 chr3R 31137234 31137285 7 88 1.5 2.0 1.8 2.5 120 chr3R 31137165 intron Gycbeta100B + chr3R 31137225 intron Gycbeta100B + chr3R 31137285 intron Gycbeta100B + chr3R_7_31135001 chr3R_31135001 RAL-439 1965 chr3R 31426866 31426905 chr3R 31426978 31427015 8 108 4.0 8.5 6.2 1.1 149 chr3R 31426866 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427015 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-439 1966 chr3R 31435354 31435382 chr3R 31435525 31435554 6 172 5.5 8.0 6.8 0.8 200 chr3R 31435354 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435554 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-439 1967 chr3R 31539852 31539869 chr3R 31539957 31539974 5 105 5.5 5.0 5.2 0.8 122 chr3R 31539852 intergenic not near genes chr3R 31539913 intergenic not near genes chr3R 31539974 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-439 1968 chr3R 31539870 31539884 chr3R 31539956 31539988 4 94 3.0 5.0 4.0 0.8 118 chr3R 31539870 intergenic not near genes chr3R 31539929 intergenic not near genes chr3R 31539988 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-439 1969 chr3R 31610100 31610144 chr3R 31610206 31610240 24 102 5.5 3.5 4.5 4.4 140 chr3R 31610100 intron CycG - chr3R 31610170 intron CycG - chr3R 31610240 intron CycG - chr3R_24_31610001 chr3R_31610001 RAL-439 1970 chr3R 31691547 31691564 chr3R 31696302 31696350 Doc 4 4770 2.5 2.5 2.5 1.1 4803 chr3R 31691547 intergenic not near genes chr3R 31693948 intergenic not near genes chr3R 31696350 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-439 1971 chr3R 31805133 31805160 chr3R 31805203 31805250 12 84 5.0 5.0 5.0 2.0 117 chr3R 31805133 5` UTR CG42233 - chr3R 31805192 5` UTR CG42233 - chr3R 31805250 5` UTR CG42233 - chr3R_12_31805001 chr3R_31805001 RAL-439 1972 chr3R 31831542 31831562 chr3R 31831615 31831661 4 90 3.5 8.0 5.8 0.6 119 chr3R 31831542 intron RhoGAP100F + chr3R 31831602 intron RhoGAP100F + chr3R 31831661 intron RhoGAP100F + chr3R_4_31830001 chr3R_31830001 RAL-439 1973 chr3R 31878635 31878650 chr3R 31878719 31878730 5 95 2.0 2.0 2.0 1.7 95 chr3R 31878635 intron heph - chr3R 31878682 intron heph - chr3R 31878730 intron heph - chr3R_5_31875001 chr3R_31875001 RAL-439 1974 chr3R 31881296 31881319 chr3R 31881370 31881394 4 84 1.0 5.5 3.2 1.0 98 chr3R 31881296 intron heph - chr3R 31881345 intron heph - chr3R 31881394 intron heph - chr3R_4_31880001 chr3R_31880001 RAL-439 1975 chr3R 31911671 31911713 chr3R 31911763 31911796 12 90 0.5 5.0 2.8 3.2 125 chr3R 31911671 intron heph - chr3R 31911734 intron heph - chr3R 31911796 intron heph - chr3R_12_31910001 chr3R_31910001 RAL-439 1976 chr3R 31971395 31971440 chr3R 31971492 31971537 17 92 8.0 5.5 6.8 2.2 142 chr3R 31971395 intron heph - chr3R 31971466 intron heph - chr3R 31971537 intron heph - chr3R_17_31970001 chr3R_31970001 RAL-439 1977 chr3R 31991088 31991138 chr3R 31991182 31991237 22 95 5.0 7.5 6.2 3.1 149 chr3R 31991088 intron heph - chr3R 31991162 intron heph - chr3R 31991237 intron heph - chr3R_22_31990001 chr3R_31990001 RAL-439 1978 chr3R 31997878 31997926 chr3R 32005576 32005603 blood 11 7691 2.5 4.5 3.5 2.4 7725 chr3R 31997878 intron heph - chr3R 32001740 intron heph - chr3R 32005603 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-439 1979 chr3R 32022311 32022335 chr3R 32022433 32022452 4 121 7.0 5.0 6.0 0.6 141 chr3R 32022311 5` UTR CR45557 + chr3R 32022382 5` UTR CR45557 + chr3R 32022452 5` UTR CR45557 + chr3R_4_32020001 chr3R_32020001 RAL-439 1980 chr3R 32045568 32045592 chr3R 32045669 32045693 11 101 8.0 8.5 8.2 1.2 125 chr3R 32045568 3` UTR krz - chr3R 32045630 3` UTR krz - chr3R 32045693 3` UTR krz - chr3R_11_32045001 chr3R_32045001 RAL-439 1981 chr3R 32045595 32045603 chr3R 32045661 32045694 5 91 6.5 6.5 6.5 0.7 99 chr3R 32045595 3` UTR krz - chr3R 32045644 3` UTR krz - chr3R 32045694 3` UTR krz - chr3R_5_32045001 chr3R_32045001 RAL-439 1982 chr4 314498 314530 chr4 314596 314628 9 96 4.0 7.5 5.8 1.3 130 chr4 314498 intergenic Zip102B -,CG32850 + chr4 314563 intergenic CG32850 +,Zip102B - chr4 314628 intergenic CG32850 + chr4_9_310001 chr4_310001 RAL-439 1983 chr4 319973 320013 chr4 328169 328204 Stalker2 12 8194 11.5 6.5 9.0 1.2 8231 chr4 319973 3` UTR CG32850 + chr4 324088 intron CG32850 + chr4 328204 3` UTR,3` UTR CG32850 +,PMCA - chr4_12_320001 chr4_320001 RAL-439 1984 chr4 521325 521354 chr4 521423 521452 10 92 3.0 3.0 3.0 2.5 127 chr4 521325 intron zfh2 + chr4 521388 intron zfh2 + chr4 521452 intron zfh2 + chr4_10_520001 chr4_520001 RAL-439 1985 chr4 662193 662206 chr4 662853 662862 INE-1 4 661 0.0 7.5 3.8 0.8 669 chr4 662193 intron gw - chr4 662528 intron gw - chr4 662862 5` UTR gw - chr4_4_660001 chr4_660001 RAL-439 1986 chr4 671605 671630 chr4 680187 680233 Tirant 5 8590 4.0 8.0 6.0 0.7 8628 chr4 671605 intron CG11360 + chr4 675919 intron CG11360 + chr4 680233 intron CG11360 + chr4_5_675001 chr4_675001 RAL-439 1987 chrX 292425 292448 chrX 293064 293113 G3 10 648 4.0 25.0 14.5 0.6 688 chrX 292425 intron,intron CG3777 +,CG13375 - chrX 292769 intron,intron CG3777 +,CG13375 - chrX 293113 intron,intron CG3777 +,CG13375 - chrX_10_290001 chrX_290001 RAL-439 1988 chrX 295836 295880 chrX 303476 303520 412 5 7640 1.0 3.0 2.0 1.7 7684 chrX 295836 intron CG3777 + chrX 299678 intron CG3777 + chrX 303520 intron CG3777 + chrX_5_295001 chrX_295001 RAL-439 1989 chrX 318457 318496 chrX 323562 323597 flea 12 5100 2.5 5.5 4.0 2.4 5140 chrX 318457 intron,intron CG3777 +,CG32816 - chrX 321027 intron,intron CG3777 +,CG32816 - chrX 323597 intron,intron CG3777 +,CG32816 - chrX_12_320001 chrX_320001 RAL-439 1990 chrX 428416 428448 chrX 434603 434647 3S18 6 6199 6.0 4.5 5.2 1.0 6231 chrX 428416 intron CG32816 - chrX 431532 intron CG32816 - chrX 434647 intron CG32816 - chrX_6_430001 chrX_430001 RAL-439 1991 chrX 440984 441022 chrX 441077 441095 7 93 1.5 3.0 2.2 2.2 111 chrX 440984 intron CG32816 - chrX 441040 intron CG32816 - chrX 441095 intron CG32816 - chrX_7_440001 chrX_440001 RAL-439 1992 chrX 450344 450395 chrX 450442 450493 9 97 2.0 7.0 4.5 1.6 149 chrX 450344 intron CG32816 - chrX 450418 intron CG32816 - chrX 450493 intron CG32816 - chrX_9_450001 chrX_450001 RAL-439 1993 chrX 494611 494635 chrX 494687 494692 7 87 4.0 3.0 3.5 1.6 81 chrX 494611 intergenic CG17778 + chrX 494652 5` UTR CG17778 + chrX 494692 5` UTR CG17778 + chrX_7_490001 chrX_490001 RAL-439 1994 chrX 547616 547648 chrX 547880 547892 7 260 8.0 4.0 6.0 1.0 276 chrX 547616 intron Appl + chrX 547754 intron Appl + chrX 547892 intron Appl + chrX_7_545001 chrX_545001 RAL-439 1995 chrX 547649 547655 chrX 547877 547919 4 249 6.5 4.0 5.2 0.6 270 chrX 547649 intron Appl + chrX 547784 intron Appl + chrX 547919 intron Appl + chrX_4_545001 chrX_545001 RAL-439 1996 chrX 667635 667682 chrX 667729 667785 10 101 1.0 3.0 2.0 3.3 150 chrX 667635 intergenic not near genes chrX 667710 intergenic not near genes chrX 667785 intergenic not near genes chrX_10_665001 chrX_665001 RAL-439 1997 chrX 680826 680868 chrX 680920 680951 8 86 2.5 1.5 2.0 2.7 125 chrX 680826 intergenic not near genes chrX 680888 intergenic not near genes chrX 680951 intergenic not near genes chrX_8_680001 chrX_680001 RAL-439 1998 chrX 812253 812296 chrX 817900 817931 297 6 5640 5.5 5.0 5.2 1.0 5678 chrX 812253 intron CG43867 - chrX 815092 intron CG43867 - chrX 817931 intron CG43867 - chrX_6_815001 chrX_815001 RAL-439 1999 chrX 1253733 1253748 chrX 1253818 1253849 4 97 0.5 5.0 2.8 1.1 116 chrX 1253733 intron Atf3 - chrX 1253791 intron Atf3 - chrX 1253849 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-439 2000 chrX 1357761 1357813 chrX 1367951 1367970 Doc 13 10180 2.0 6.0 4.0 2.6 10209 chrX 1357761 intergenic png - chrX 1362866 intergenic not near genes chrX 1367970 intergenic not near genes chrX_13_1360001 chrX_1360001 RAL-439 2001 chrX 1428573 1428625 chrX 1428679 1428696 11 95 5.0 3.5 4.2 2.1 123 chrX 1428573 intron futsch + chrX 1428634 intron futsch + chrX 1428696 intron futsch + chrX_11_1425001 chrX_1425001 RAL-439 2002 chrX 1494704 1494739 chrX 1494849 1494868 5 135 3.5 3.0 3.2 1.2 164 chrX 1494704 intron,intron inc +,Nmdar2 - chrX 1494786 intron,intron inc +,Nmdar2 - chrX 1494868 intron,intron inc +,Nmdar2 - chrX_5_1490001 chrX_1490001 RAL-439 2003 chrX 1518038 1518048 chrX 1523449 1523470 jockey 5 5420 0.5 6.5 3.5 1.1 5432 chrX 1518038 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523470 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-439 2004 chrX 1518051 1518061 chrX 1523443 1523483 jockey 5 5409 0.5 4.5 2.5 1.4 5432 chrX 1518051 intergenic inc + chrX 1520767 intergenic not near genes chrX 1523483 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-439 2005 chrX 1930525 1930570 chrX 1938116 1938161 opus 4 7587 5.5 8.0 6.8 0.5 7636 chrX 1930525 intergenic CG11596 + chrX 1934343 intergenic not near genes chrX 1938161 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-439 2006 chrX 2146634 2146686 chrX 2146746 2146783 6 102 0.5 2.5 1.5 2.4 149 chrX 2146634 intron Pgd + chrX 2146708 intron Pgd + chrX 2146783 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-439 2007 chrX 2429661 2429666 chrX 2429739 2429767 4 95 0.0 4.5 2.2 1.2 106 chrX 2429661 intergenic not near genes chrX 2429714 intergenic not near genes chrX 2429767 intergenic not near genes chrX_4_2425001 chrX_2425001 RAL-439 2008 chrX 2461501 2461535 chrX 2461666 2461685 5 164 2.5 1.0 1.8 1.8 184 chrX 2461501 intron boi - chrX 2461593 intron boi - chrX 2461685 intron boi - chrX_5_2460001 chrX_2460001 RAL-439 2009 chrX 2610376 2610400 chrX 2617505 2617511 HMS-Beagle 4 7128 4.5 2.5 3.5 0.9 7135 chrX 2610376 intergenic CG8636 - chrX 2613944 intergenic not near genes chrX 2617511 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-439 2010 chrX 2664367 2664417 chrX 2665533 2665563 1360 8 1152 5.5 3.5 4.5 1.5 1196 chrX 2664367 intron sgg + chrX 2664965 intron sgg + chrX 2665563 intron sgg + chrX_8_2660001 chrX_2660001 RAL-439 2011 chrX 2844900 2844925 chrX 2852316 2852355 mdg1 5 7425 3.5 5.0 4.2 1.0 7455 chrX 2844900 intron kirre + chrX 2848628 intron kirre + chrX 2852355 intron kirre + chrX_5_2845001 chrX_2845001 RAL-439 2012 chrX 3075634 3075645 chrX 3080959 3080969 Transpac 5 5325 4.0 1.0 2.5 1.4 5335 chrX 3075634 intron kirre + chrX 3078302 intron kirre + chrX 3080969 intron kirre + chrX_5_3075001 chrX_3075001 RAL-439 2013 chrX 3075647 3075659 chrX 3080944 3080984 Transpac 5 5305 3.5 1.0 2.2 1.6 5337 chrX 3075647 intron kirre + chrX 3078316 intron kirre + chrX 3080984 intron kirre + chrX_5_3075001 chrX_3075001 RAL-439 2014 chrX 3107749 3107784 chrX 3107850 3107893 7 102 2.5 3.5 3.0 1.8 144 chrX 3107749 intron kirre + chrX 3107821 intron kirre + chrX 3107893 intron kirre + chrX_7_3105001 chrX_3105001 RAL-439 2015 chrX 3243640 3243660 chrX 3243719 3243729 8 89 2.5 3.0 2.8 2.1 89 chrX 3243640 intron dnc + chrX 3243684 intron dnc + chrX 3243729 intron dnc + chrX_8_3240001 chrX_3240001 RAL-439 2016 chrX 3306325 3306373 chrX 3306426 3306475 5 96 2.0 1.5 1.8 1.8 150 chrX 3306325 intron dnc + chrX 3306400 intron dnc + chrX 3306475 intron dnc + chrX_5_3305001 chrX_3305001 RAL-439 2017 chrX 3414321 3414358 chrX 3414468 3414505 4 146 2.0 2.5 2.2 1.2 184 chrX 3414321 intron,intron CR44999 +,CG12535 - chrX 3414413 intron,intron CR44999 +,CG12535 - chrX 3414505 intron,intron CR44999 +,CG12535 - chrX_4_3410001 chrX_3410001 RAL-439 2018 chrX 3481734 3481745 chrX 3481830 3481841 4 96 5.0 3.5 4.2 0.8 107 chrX 3481734 intron,intron CR44999 +,CG10804 - chrX 3481788 intron,intron CR44999 +,CG10804 - chrX 3481841 intron,intron CR44999 +,CG10804 - chrX_4_3480001 chrX_3480001 RAL-439 2019 chrX 3481750 3481773 chrX 3481818 3481864 6 90 3.5 3.0 3.2 1.4 114 chrX 3481750 intron,intron CR44999 +,CG10804 - chrX 3481807 intron,intron CR44999 +,CG10804 - chrX 3481864 intron,intron CR44999 +,CG10804 - chrX_6_3480001 chrX_3480001 RAL-439 2020 chrX 3513742 3513790 chrX 3513845 3513891 14 98 2.5 1.0 1.8 5.0 149 chrX 3513742 intron,intron CR44999 +,CG32791 - chrX 3513816 intron,intron CR44999 +,CG32791 - chrX 3513891 intron,intron CR44999 +,CG32791 - chrX_14_3510001 chrX_3510001 RAL-439 2021 chrX 3535407 3535435 chrX 3535507 3535546 8 108 1.5 5.0 3.2 1.9 139 chrX 3535407 intron CG32791 - chrX 3535476 intron CG32791 - chrX 3535546 intron CG32791 - chrX_8_3535001 chrX_3535001 RAL-439 2022 chrX 3597092 3597127 chrX 3597200 3597211 8 100 3.5 3.5 3.5 1.8 119 chrX 3597092 intron AstA-R1 + chrX 3597152 intron AstA-R1 + chrX 3597211 intron AstA-R1 + chrX_8_3595001 chrX_3595001 RAL-439 2023 chrX 3597544 3597575 chrX 3619725 3619749 roo 4 22178 5.5 1.0 3.2 1.0 22205 chrX 3597544 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-439 2024 chrX 3629830 3629877 chrX 3629935 3629977 13 101 1.0 3.0 2.0 4.3 147 chrX 3629830 intron AstA-R1 + chrX 3629904 intron AstA-R1 + chrX 3629977 intron AstA-R1 + chrX_13_3625001 chrX_3625001 RAL-439 2025 chrX 3630559 3630573 chrX 3630622 3630664 5 79 1.0 2.5 1.8 1.8 105 chrX 3630559 intron AstA-R1 + chrX 3630612 intron AstA-R1 + chrX 3630664 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-439 2026 chrX 3842334 3842352 chrX 3842572 3842589 pogo 6 236 3.5 5.5 4.5 1.1 255 chrX 3842334 intron ec + chrX 3842462 intron ec + chrX 3842589 intron ec + chrX_6_3840001 chrX_3840001 RAL-439 2027 chrX 3881254 3881298 chrX 3881412 3881436 6 150 2.0 0.0 1.0 3.0 182 chrX 3881254 intron VhaAC39-1 + chrX 3881345 intron VhaAC39-1 + chrX 3881436 intron VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-439 2028 chrX 3888482 3888493 chrX 3888580 3888587 6 97 0.0 2.0 1.0 3.0 105 chrX 3888482 intron CG15239 + chrX 3888534 intron CG15239 + chrX 3888587 intron CG15239 + chrX_6_3885001 chrX_3885001 RAL-439 2029 chrX 3915534 3915553 chrX 3915616 3915660 9 98 0.5 3.5 2.0 3.0 126 chrX 3915534 intron CG42541 - chrX 3915597 intron CG42541 - chrX 3915660 intron CG42541 - chrX_9_3915001 chrX_3915001 RAL-439 2030 chrX 3919113 3919145 chrX 3919211 3919243 9 94 0.5 2.5 1.5 3.6 130 chrX 3919113 intron CG42541 - chrX 3919178 intron CG42541 - chrX 3919243 intron CG42541 - chrX_9_3915001 chrX_3915001 RAL-439 2031 chrX 3922127 3922154 chrX 3922411 3922444 5 287 2.5 4.5 3.5 1.1 317 chrX 3922127 intron CG42541 - chrX 3922286 intron CG42541 - chrX 3922444 intron CG42541 - chrX_5_3920001 chrX_3920001 RAL-439 2032 chrX 3930035 3930072 chrX 3930126 3930173 8 96 3.5 7.0 5.2 1.3 138 chrX 3930035 5` UTR CG42541 - chrX 3930104 5` UTR CG42541 - chrX 3930173 5` UTR CG42541 - chrX_8_3930001 chrX_3930001 RAL-439 2033 chrX 3939736 3939771 chrX 3939903 3939922 12 163 6.5 3.5 5.0 2.0 186 chrX 3939736 3` UTR CG2941 + chrX 3939829 3` UTR CG2941 + chrX 3939922 3` UTR CG2941 + chrX_12_3935001 chrX_3935001 RAL-439 2034 chrX 3986868 3986894 chrX 3994494 3994546 412 5 7645 1.0 3.0 2.0 1.7 7678 chrX 3986868 intergenic not near genes chrX 3990707 intergenic not near genes chrX 3994546 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-439 2035 chrX 4048482 4048525 chrX 4048578 4048621 13 94 7.0 5.5 6.2 1.8 139 chrX 4048482 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048621 3` UTR CR45482 - chrX_13_4045001 chrX_4045001 RAL-439 2036 chrX 4132653 4132691 chrX 4132841 4132865 8 183 6.0 3.0 4.5 1.5 212 chrX 4132653 3` UTR GlcAT-I + chrX 4132759 3` UTR GlcAT-I + chrX 4132865 intergenic Fas2 -,GlcAT-I + chrX_8_4130001 chrX_4130001 RAL-439 2037 chrX 4157876 4157920 chrX 4164949 4164973 297 7 7061 4.0 2.5 3.2 1.7 7097 chrX 4157876 intron Fas2 - chrX 4161424 intron Fas2 - chrX 4164973 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-439 2038 chrX 4343864 4343895 chrX 4343999 4344019 6 131 4.0 1.5 2.8 1.6 155 chrX 4343864 intron norpA + chrX 4343942 intron norpA + chrX 4344019 intron norpA + chrX_6_4340001 chrX_4340001 RAL-439 2039 chrX 4348766 4348809 chrX 4348960 4349004 10 188 2.5 0.0 1.2 4.5 238 chrX 4348766 intron norpA + chrX 4348885 intron norpA + chrX 4349004 5` UTR norpA + chrX_10_4345001 chrX_4345001 RAL-439 2040 chrX 4415286 4415333 chrX 4415382 4415396 6 87 7.5 3.5 5.5 0.9 110 chrX 4415286 intron,intron CR32773 -,bi + chrX 4415341 intron,intron CR32773 -,bi + chrX 4415396 intron,intron CR32773 -,bi + chrX_6_4415001 chrX_4415001 RAL-439 2041 chrX 4525747 4525761 chrX 4525854 4525873 5 108 6.0 4.5 5.2 0.8 126 chrX 4525747 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525873 intron CR32773 - chrX_5_4525001 chrX_4525001 RAL-439 2042 chrX 4525762 4525766 chrX 4525849 4525878 4 106 5.0 2.5 3.8 0.8 116 chrX 4525762 intron CR32773 - chrX 4525820 intron CR32773 - chrX 4525878 intron CR32773 - chrX_4_4525001 chrX_4525001 RAL-439 2043 chrX 4700374 4700392 chrX 4700737 4700744 jockey 5 360 8.5 6.0 7.2 0.6 370 chrX 4700374 3` UTR ctp + chrX 4700559 3` UTR ctp + chrX 4700744 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-439 2044 chrX 4700408 4700424 chrX 4700735 4700749 jockey 4 340 3.5 6.0 4.8 0.7 341 chrX 4700408 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700749 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-439 2045 chrX 4723566 4723585 chrX 4723666 4723673 4 97 2.5 2.5 2.5 1.1 107 chrX 4723566 exon Proc-R + chrX 4723620 intron Proc-R + chrX 4723673 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-439 2046 chrX 4744145 4744174 chrX 4744258 4744292 12 113 3.0 0.5 1.8 4.3 147 chrX 4744145 intergenic not near genes chrX 4744218 intergenic not near genes chrX 4744292 intergenic not near genes chrX_12_4740001 chrX_4740001 RAL-439 2047 chrX 4827954 4827996 chrX 4835345 4835387 Stalker4 6 7386 4.0 3.5 3.8 1.2 7433 chrX 4827954 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835387 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-439 2048 chrX 4931326 4931377 chrX 4931440 4931471 7 109 44.0 33.5 38.8 0.2 145 chrX 4931326 intron CG44774 - chrX 4931398 intron CG44774 - chrX 4931471 intron CG44774 - chrX_7_4930001 chrX_4930001 RAL-439 2049 chrX 4990023 4990077 chrX 4997257 4997310 roo 16 7233 0.5 4.5 2.5 4.6 7287 chrX 4990023 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997310 intron CR44833 - chrX_16_4990001 chrX_4990001 RAL-439 2050 chrX 5096278 5096306 chrX 5103838 5103874 springer 10 7574 0.5 2.0 1.2 4.5 7596 chrX 5096278 intron,intron CG15465 +,rg + chrX 5100076 intron,intron CG15465 +,rg + chrX 5103874 intron,intron CG15465 +,rg + chrX_10_5100001 chrX_5100001 RAL-439 2051 chrX 5147837 5147864 chrX 5147963 5147983 5 116 4.5 1.0 2.8 1.3 146 chrX 5147837 intron,intron CG15465 +,rg + chrX 5147910 intron,intron CG15465 +,rg + chrX 5147983 intron,intron CG15465 +,rg + chrX_5_5145001 chrX_5145001 RAL-439 2052 chrX 5204453 5204476 chrX 5204656 5204699 7 217 2.5 4.5 3.5 1.6 246 chrX 5204453 intron,intron CG15465 +,rg + chrX 5204576 intron,intron CG15465 +,rg + chrX 5204699 intron,intron CG15465 +,rg + chrX_7_5200001 chrX_5200001 RAL-439 2053 chrX 5264036 5264075 chrX 5264137 5264148 6 98 3.5 1.5 2.5 1.7 112 chrX 5264036 intergenic not near genes chrX 5264092 intergenic not near genes chrX 5264148 intergenic not near genes chrX_6_5260001 chrX_5260001 RAL-439 2054 chrX 5345366 5345396 chrX 5345524 5345550 5 157 3.0 7.0 5.0 0.8 184 chrX 5345366 intron SK + chrX 5345458 intron SK + chrX 5345550 intron SK + chrX_5_5345001 chrX_5345001 RAL-439 2055 chrX 5349274 5349285 chrX 5349355 5349364 7 86 5.0 2.5 3.8 1.5 90 chrX 5349274 intron SK + chrX 5349319 intron SK + chrX 5349364 intron SK + chrX_7_5345001 chrX_5345001 RAL-439 2056 chrX 5349292 5349309 chrX 5349354 5349399 11 82 1.5 3.0 2.2 3.4 107 chrX 5349292 intron SK + chrX 5349346 intron SK + chrX 5349399 intron SK + chrX_11_5345001 chrX_5345001 RAL-439 2057 chrX 5456568 5456609 chrX 5456704 5456726 9 128 4.5 4.5 4.5 1.6 158 chrX 5456568 intron SPR + chrX 5456647 intron SPR + chrX 5456726 intron SPR + chrX_9_5455001 chrX_5455001 RAL-439 2058 chrX 5524849 5524855 chrX 5528732 5528738 412 4 3882 4.5 2.0 3.2 1.0 3889 chrX 5524849 intergenic snoRNA:Psi28S-3342 - chrX 5526794 intergenic not near genes chrX 5528738 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-439 2059 chrX 5726260 5726276 chrX 5726600 5726626 6 353 0.0 5.0 2.5 1.7 366 chrX 5726260 intron CG32758 - chrX 5726443 intron CG32758 - chrX 5726626 intron CG32758 - chrX_6_5725001 chrX_5725001 RAL-439 2060 chrX 5883808 5883837 chrX 5884064 5884098 pogo 6 255 1.5 6.0 3.8 1.2 290 chrX 5883808 intron CR45668 - chrX 5883953 intron CR45668 - chrX 5884098 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-439 2061 chrX 5884176 5884192 chrX 5884401 5884438 pogo 5 242 3.0 2.0 2.5 1.4 262 chrX 5884176 intron CR45668 - chrX 5884307 intron CR45668 - chrX 5884438 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-439 2062 chrX 6003284 6003293 chrX 6003370 6003388 4 91 2.0 1.5 1.8 1.4 104 chrX 6003284 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003388 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-439 2063 chrX 6003300 6003305 chrX 6003366 6003375 4 83 0.5 1.5 1.0 2.0 75 chrX 6003300 intron CR44498 + chrX 6003338 intron CR44498 + chrX 6003375 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-439 2064 chrX 6171582 6171614 chrX 6179020 6179032 Quasimodo 13 7447 4.5 2.0 3.2 3.1 7450 chrX 6171582 intron Ca-alpha1T - chrX 6175307 intron Ca-alpha1T - chrX 6179032 intron Ca-alpha1T - chrX_13_6175001 chrX_6175001 RAL-439 2065 chrX 6198781 6198822 chrX 6198881 6198931 7 107 4.0 3.5 3.8 1.5 150 chrX 6198781 intergenic CG32751 -,CG43090 - chrX 6198856 intergenic CG32751 -,CG43090 - chrX 6198931 intergenic CG32751 -,CG43090 - chrX_7_6195001 chrX_6195001 RAL-439 2066 chrX 6312180 6312215 chrX 6312273 6312308 10 93 4.0 1.5 2.8 2.6 128 chrX 6312180 intron CG15894 + chrX 6312244 intron CG15894 + chrX 6312308 intron CG15894 + chrX_10_6310001 chrX_6310001 RAL-439 2067 chrX 6315164 6315190 chrX 6315299 6315340 7 145 5.0 4.5 4.8 1.2 176 chrX 6315164 intron CG15894 + chrX 6315252 intron CG15894 + chrX 6315340 intron CG15894 + chrX_7_6315001 chrX_6315001 RAL-439 2068 chrX 6392864 6392893 chrX 6397649 6397661 Doc 4 4775 1.5 7.0 4.2 0.8 4797 chrX 6392864 intergenic not near genes chrX 6395262 intergenic not near genes chrX 6397661 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-439 2069 chrX 6591837 6591872 chrX 6591942 6591956 8 102 5.5 0.0 2.8 2.1 119 chrX 6591837 intron Pat1 + chrX 6591896 intron Pat1 + chrX 6591956 intron Pat1 + chrX_8_6590001 chrX_6590001 RAL-439 2070 chrX 6897580 6897707 chrX 6897648 6897837 7 103 0.5 1.0 0.8 3.9 257 chrX 6897580 intergenic not near genes chrX 6897708 intergenic not near genes chrX 6897837 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-439 2071 chrX 6933504 6933520 chrX 6933950 6933997 4 450 3.0 1.5 2.2 1.2 493 chrX 6933504 intron CG14431 + chrX 6933750 intron CG14431 + chrX 6933997 intron CG14431 + chrX_4_6930001 chrX_6930001 RAL-439 2072 chrX 6984605 6984629 chrX 6984701 6984716 7 92 8.0 3.5 5.8 1.0 111 chrX 6984605 intron ogre - chrX 6984660 intron ogre - chrX 6984716 intron ogre - chrX_7_6980001 chrX_6980001 RAL-439 2073 chrX 6984634 6984653 chrX 6984700 6984740 6 83 3.5 3.0 3.2 1.4 106 chrX 6984634 intron ogre - chrX 6984687 intron ogre - chrX 6984740 intron ogre - chrX_6_6980001 chrX_6980001 RAL-439 2074 chrX 7023581 7023630 chrX 7030991 7031030 Tabor 8 7398 5.0 1.5 3.2 1.9 7449 chrX 7023581 intron CG12541 - chrX 7027306 intron CG12541 - chrX 7031030 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-439 2075 chrX 7125226 7125278 chrX 7134405 7134428 roo 11 9175 1.5 3.0 2.2 3.4 9202 chrX 7125226 intergenic not near genes chrX 7129827 intergenic not near genes chrX 7134428 intergenic not near genes chrX_11_7125001 chrX_7125001 RAL-439 2076 chrX 7702923 7702934 chrX 7703342 7703365 jockey 6 439 5.5 5.0 5.2 1.0 442 chrX 7702923 intron CHES-1-like - chrX 7703144 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-439 2077 chrX 7832422 7832465 chrX 7832526 7832564 9 101 3.5 3.5 3.5 2.0 142 chrX 7832422 intron CG1402 + chrX 7832493 intron CG1402 + chrX 7832564 intron CG1402 + chrX_9_7830001 chrX_7830001 RAL-439 2078 chrX 7845704 7845757 chrX 7847215 7847268 hopper2 6 1508 3.0 5.0 4.0 1.2 1564 chrX 7845704 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847268 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-439 2079 chrX 7881868 7881880 chrX 7881960 7881982 4 100 1.5 12.0 6.8 0.5 114 chrX 7881868 intergenic Ir7f -,Ir7e - chrX 7881925 intergenic Ir7f -,Ir7e - chrX 7881982 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-439 2080 chrX 8031406 8031451 chrX 8035735 8035760 Juan 8 4325 3.0 5.5 4.2 1.5 4354 chrX 8031406 intergenic not near genes chrX 8033583 intergenic not near genes chrX 8035760 3` UTR CG2233 - chrX_8_8030001 chrX_8030001 RAL-439 2081 chrX 8085553 8085599 chrX 8085659 8085705 7 101 1.0 2.5 1.8 2.5 152 chrX 8085553 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085705 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-439 2082 chrX 8092287 8092320 chrX 8092372 8092415 5 96 3.0 4.0 3.5 1.1 128 chrX 8092287 intron Ubc-E2H - chrX 8092351 intron Ubc-E2H - chrX 8092415 intron Ubc-E2H - chrX_5_8090001 chrX_8090001 RAL-439 2083 chrX 8506014 8506055 chrX 8506112 8506153 5 97 3.0 6.0 4.5 0.9 139 chrX 8506014 intron CG33181 + chrX 8506084 intron CG33181 + chrX 8506153 intron CG33181 + chrX_5_8505001 chrX_8505001 RAL-439 2084 chrX 8506529 8506560 chrX 8506736 8506753 6 214 1.5 0.0 0.8 3.3 224 chrX 8506529 intron CG33181 + chrX 8506641 intron CG33181 + chrX 8506753 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-439 2085 chrX 8509100 8509150 chrX 8509197 8509215 7 91 2.5 4.0 3.2 1.7 115 chrX 8509100 intron CG33181 + chrX 8509158 intron CG33181 + chrX 8509215 intron CG33181 + chrX_7_8505001 chrX_8505001 RAL-439 2086 chrX 8536741 8536778 chrX 8536837 8536874 9 89 9.0 3.5 6.2 1.2 133 chrX 8536741 intron Nrg + chrX 8536808 intron Nrg + chrX 8536874 intron Nrg + chrX_9_8535001 chrX_8535001 RAL-439 2087 chrX 8668879 8668895 chrX 8668991 8668991 4 107 7.5 0.0 3.8 0.8 112 chrX 8668879 intergenic not near genes chrX 8668935 intergenic not near genes chrX 8668991 intergenic not near genes chrX_4_8665001 chrX_8665001 RAL-439 2088 chrX 8948737 8948792 chrX 8956267 8956297 roo 10 7521 3.5 5.5 4.5 1.8 7560 chrX 8948737 intron rdgA + chrX 8952517 intron rdgA + chrX 8956297 intron rdgA + chrX_10_8950001 chrX_8950001 RAL-439 2089 chrX 9062717 9062752 chrX 9062815 9062850 7 95 2.5 0.5 1.5 2.8 133 chrX 9062717 intron CG15365 - chrX 9062784 intron CG15365 - chrX 9062850 intron CG15365 - chrX_7_9060001 chrX_9060001 RAL-439 2090 chrX 9129462 9129512 chrX 9129567 9129606 9 99 2.5 3.0 2.8 2.4 144 chrX 9129462 intron fend - chrX 9129534 intron fend - chrX 9129606 intron fend - chrX_9_9125001 chrX_9125001 RAL-439 2091 chrX 9508143 9508163 chrX 9509661 9509691 jockey 8 1533 4.0 0.5 2.2 2.5 1548 chrX 9508143 intron CG32700 - chrX 9508917 intron CG32700 - chrX 9509691 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-439 2092 chrX 9527925 9527946 chrX 9528005 9528027 4 78 4.0 1.5 2.8 1.1 102 chrX 9527925 intron CG32700 - chrX 9527976 intron CG32700 - chrX 9528027 intron CG32700 - chrX_4_9525001 chrX_9525001 RAL-439 2093 chrX 9575794 9575815 chrX 9576113 9576123 mdg3 6 323 0.5 4.0 2.2 1.9 329 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575958 intron,intron CG32699 -,CG42395 - chrX 9576123 intron,exon CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-439 2094 chrX 9599164 9599202 chrX 9599253 9599292 6 90 2.0 1.0 1.5 2.4 128 chrX 9599164 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599292 intergenic not near genes chrX_6_9595001 chrX_9595001 RAL-439 2095 chrX 9923374 9923423 chrX 9923483 9923493 5 99 4.5 4.5 4.5 0.9 119 chrX 9923374 intergenic not near genes chrX 9923434 intergenic not near genes chrX 9923493 intergenic not near genes chrX_5_9920001 chrX_9920001 RAL-439 2096 chrX 10138224 10138239 chrX 10145748 10145763 412 7 7523 5.0 8.5 6.8 0.9 7539 chrX 10138224 intron,intron RhoU +,CR44894 - chrX 10141994 intron,intron RhoU +,CR44894 - chrX 10145763 intron,intron RhoU +,CR44894 - chrX_7_10140001 chrX_10140001 RAL-439 2097 chrX 10138242 10138247 chrX 10145719 10145771 412 4 7512 3.5 4.0 3.8 0.8 7529 chrX 10138242 intron,intron RhoU +,CR44894 - chrX 10142006 intron,intron RhoU +,CR44894 - chrX 10145771 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-439 2098 chrX 10267300 10267332 chrX 10276470 10276500 roo 9 9168 1.0 3.0 2.0 3.0 9200 chrX 10267300 3` UTR alpha-Man-I - chrX 10271900 intron alpha-Man-I - chrX 10276500 3` UTR alpha-Man-I - chrX_9_10270001 chrX_10270001 RAL-439 2099 chrX 10317536 10317579 chrX 10317634 10317677 13 94 0.0 3.0 1.5 5.2 141 chrX 10317536 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317677 intron alpha-Man-I - chrX_13_10315001 chrX_10315001 RAL-439 2100 chrX 10348780 10348825 chrX 10356365 10356368 springer 10 7566 2.5 2.5 2.5 2.9 7588 chrX 10348780 intergenic snoRNA:U3:9B + chrX 10352574 intergenic not near genes chrX 10356368 intergenic l(1)G0289 - chrX_10_10350001 chrX_10350001 RAL-439 2101 chrX 10433876 10433915 chrX 10434089 10434104 10 204 3.0 5.0 4.0 2.0 228 chrX 10433876 intron CG32683 - chrX 10433990 intron CG32683 - chrX 10434104 intron CG32683 - chrX_10_10430001 chrX_10430001 RAL-439 2102 chrX 10532494 10532524 chrX 10532586 10532613 4 93 5.0 4.0 4.5 0.7 119 chrX 10532494 intron spri - chrX 10532554 intron spri - chrX 10532613 intron spri - chrX_4_10530001 chrX_10530001 RAL-439 2103 chrX 10550859 10550866 chrX 10552325 10552326 hobo 5 1474 5.0 0.5 2.8 1.3 1467 chrX 10550859 intron spri - chrX 10551592 intron spri - chrX 10552326 intron spri - chrX_5_10550001 chrX_10550001 RAL-439 2104 chrX 10651617 10651631 chrX 10651748 10651767 8 134 1.0 5.5 3.2 1.9 150 chrX 10651617 intron X11Lbeta + chrX 10651692 intron X11Lbeta + chrX 10651767 intron X11Lbeta + chrX_8_10650001 chrX_10650001 RAL-439 2105 chrX 10651634 10651644 chrX 10651745 10651780 5 129 1.0 5.5 3.2 1.2 146 chrX 10651634 intron X11Lbeta + chrX 10651707 intron X11Lbeta + chrX 10651780 intron X11Lbeta + chrX_5_10650001 chrX_10650001 RAL-439 2106 chrX 10666432 10666469 chrX 10666614 10666656 10 184 8.0 5.5 6.8 1.3 224 chrX 10666432 intron X11Lbeta + chrX 10666544 intron X11Lbeta + chrX 10666656 intron X11Lbeta + chrX_10_10665001 chrX_10665001 RAL-439 2107 chrX 10686037 10686057 chrX 10691194 10691209 roo 5 5156 7.5 1.5 4.5 0.9 5172 chrX 10686037 intron X11Lbeta + chrX 10688623 intron X11Lbeta + chrX 10691209 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-439 2108 chrX 10773236 10773262 chrX 10773340 10773366 6 103 0.0 4.5 2.2 1.9 130 chrX 10773236 intron CG15211 + chrX 10773301 intron CG15211 + chrX 10773366 intron CG15211 + chrX_6_10770001 chrX_10770001 RAL-439 2109 chrX 11095985 11096022 chrX 11103107 11103144 HMS-Beagle 10 7120 6.0 7.0 6.5 1.3 7159 chrX 11095985 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103144 intron CG42249 + chrX_10_11095001 chrX_11095001 RAL-439 2110 chrX 11167765 11167803 chrX 11167868 11167880 6 106 3.0 2.0 2.5 1.7 115 chrX 11167765 intergenic antdh - chrX 11167822 intergenic antdh - chrX 11167880 intergenic antdh - chrX_6_11165001 chrX_11165001 RAL-439 2111 chrX 11184250 11184280 chrX 11189332 11189376 flea 4 5090 2.0 2.5 2.2 1.2 5126 chrX 11184250 intergenic not near genes chrX 11186813 intergenic not near genes chrX 11189376 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-439 2112 chrX 11203611 11203623 chrX 11203690 11203719 5 89 0.5 9.5 5.0 0.8 108 chrX 11203611 intergenic not near genes chrX 11203665 intergenic not near genes chrX 11203719 intergenic not near genes chrX_5_11200001 chrX_11200001 RAL-439 2113 chrX 11379754 11379770 chrX 11379919 11379935 4 162 4.5 3.0 3.8 0.8 181 chrX 11379754 intron dlg1 + chrX 11379844 intron dlg1 + chrX 11379935 intron dlg1 + chrX_4_11375001 chrX_11375001 RAL-439 2114 chrX 11379772 11379792 chrX 11379916 11379933 5 145 2.5 3.0 2.8 1.3 161 chrX 11379772 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379933 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-439 2115 chrX 11533320 11533324 chrX 11533413 11533425 4 107 0.5 3.0 1.8 1.4 105 chrX 11533320 intron Drak + chrX 11533372 intron Drak + chrX 11533425 intron Drak + chrX_4_11530001 chrX_11530001 RAL-439 2116 chrX 11633403 11633430 chrX 11640472 11640483 297 13 7070 8.5 3.5 6.0 1.9 7080 chrX 11633403 intron Ptp10D + chrX 11636943 intron Ptp10D + chrX 11640483 intron Ptp10D + chrX_13_11635001 chrX_11635001 RAL-439 2117 chrX 11719851 11719901 chrX 11719950 11719976 10 94 1.5 1.0 1.2 4.5 125 chrX 11719851 3` UTR prtp + chrX 11719914 intergenic prtp +,Tango10 + chrX 11719976 intergenic prtp +,Tango10 + chrX_10_11715001 chrX_11715001 RAL-439 2118 chrX 11804666 11804687 chrX 11804790 11804811 4 124 4.5 2.5 3.5 0.9 145 chrX 11804666 intron Hsc70-3 - chrX 11804738 intron Hsc70-3 - chrX 11804811 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-439 2119 chrX 11922366 11922383 chrX 11922504 11922536 8 148 4.0 4.0 4.0 1.6 170 chrX 11922366 exon Sclp - chrX 11922451 intron Sclp - chrX 11922536 intron Sclp - chrX_8_11920001 chrX_11920001 RAL-439 2120 chrX 11936555 11936589 chrX 11936674 11936698 6 117 0.5 1.5 1.0 3.0 143 chrX 11936555 intron cac - chrX 11936626 intron cac - chrX 11936698 exon cac - chrX_6_11935001 chrX_11935001 RAL-439 2121 chrX 12094054 12094060 chrX 12094136 12094146 4 86 3.0 5.5 4.2 0.8 92 chrX 12094054 intron,intron CR43960 +,Ten-a + chrX 12094100 intron,intron CR43960 +,Ten-a + chrX 12094146 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-439 2122 chrX 12168136 12168162 chrX 12173578 12173604 I-element 4 5444 0.5 1.5 1.0 2.0 5468 chrX 12168136 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173604 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-439 2123 chrX 12206646 12206676 chrX 12206743 12206768 5 95 5.0 0.5 2.8 1.3 122 chrX 12206646 intron Ten-a + chrX 12206707 intron Ten-a + chrX 12206768 intron Ten-a + chrX_5_12205001 chrX_12205001 RAL-439 2124 chrX 12246953 12246987 chrX 12247061 12247080 4 104 2.0 3.5 2.8 1.1 127 chrX 12246953 intron Ten-a + chrX 12247016 intron Ten-a + chrX 12247080 intron Ten-a + chrX_4_12245001 chrX_12245001 RAL-439 2125 chrX 12511327 12511351 chrX 12511409 12511433 5 92 0.0 1.5 0.8 2.8 106 chrX 12511327 intron CG2556 + chrX 12511380 intron CG2556 + chrX 12511433 intron CG2556 + chrX_5_12510001 chrX_12510001 RAL-439 2126 chrX 12528846 12528896 chrX 12528942 12528951 7 88 2.0 0.0 1.0 3.5 105 chrX 12528846 intron CG43921 - chrX 12528898 intron CG43921 - chrX 12528951 intron CG43921 - chrX_7_12525001 chrX_12525001 RAL-439 2127 chrX 12823218 12823224 chrX 12823277 12823294 5 79 1.5 2.0 1.8 1.8 76 chrX 12823218 intron Pde9 - chrX 12823256 intron Pde9 - chrX 12823294 intron Pde9 - chrX_5_12820001 chrX_12820001 RAL-439 2128 chrX 12917876 12917914 chrX 12917986 12918019 11 110 4.5 4.5 4.5 2.0 143 chrX 12917876 intron fne + chrX 12917948 intron fne + chrX 12918019 intron fne + chrX_11_12915001 chrX_12915001 RAL-439 2129 chrX 12930579 12930605 chrX 12937715 12937740 HMS-Beagle 6 7130 7.5 10.5 9.0 0.6 7161 chrX 12930579 intron fne + chrX 12934160 intron fne + chrX 12937740 intron fne + chrX_6_12930001 chrX_12930001 RAL-439 2130 chrX 13146582 13146631 chrX 13146684 13146739 21 105 3.0 2.0 2.5 6.0 157 chrX 13146582 intron CG32645 + chrX 13146660 intron CG32645 + chrX 13146739 intron CG32645 + chrX_21_13145001 chrX_13145001 RAL-439 2131 chrX 13161676 13161720 chrX 13161768 13161817 19 92 3.5 3.5 3.5 4.2 141 chrX 13161676 3` UTR CG12096 + chrX 13161746 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161817 3` UTR,3` UTR CG12096 +,CG34411 - chrX_19_13160001 chrX_13160001 RAL-439 2132 chrX 13172334 13172379 chrX 13172430 13172475 12 91 3.0 3.5 3.2 2.9 141 chrX 13172334 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172475 intron CG34411 - chrX_12_13170001 chrX_13170001 RAL-439 2133 chrX 13225990 13226002 chrX 13226115 13226147 4 133 6.5 5.5 6.0 0.6 157 chrX 13225990 intron mew - chrX 13226068 intron mew - chrX 13226147 intron mew - chrX_4_13225001 chrX_13225001 RAL-439 2134 chrX 13236892 13236900 chrX 13236997 13237005 4 105 0.5 7.5 4.0 0.8 113 chrX 13236892 intron mew - chrX 13236948 intron mew - chrX 13237005 intron mew - chrX_4_13235001 chrX_13235001 RAL-439 2135 chrX 13238082 13238098 chrX 13238179 13238189 6 94 0.0 1.5 0.8 3.3 107 chrX 13238082 intron mew - chrX 13238136 intron mew - chrX 13238189 intron mew - chrX_6_13235001 chrX_13235001 RAL-439 2136 chrX 13269201 13269232 chrX 13269281 13269313 7 89 2.0 0.0 1.0 3.5 112 chrX 13269201 intron HDAC4 - chrX 13269257 intron HDAC4 - chrX 13269313 intron HDAC4 - chrX_7_13265001 chrX_13265001 RAL-439 2137 chrX 13401473 13401490 chrX 13401845 13401852 jockey 8 371 3.5 2.0 2.8 2.1 379 chrX 13401473 intergenic CG1673 +,CG12725 - chrX 13401662 intergenic CG12725 -,CG1673 + chrX 13401852 3` UTR CG12725 - chrX_8_13400001 chrX_13400001 RAL-439 2138 chrX 13401502 13401522 chrX 13401843 13401848 jockey 4 342 2.5 2.0 2.2 1.2 346 chrX 13401502 intergenic CG1673 +,CG12725 - chrX 13401675 intergenic CG12725 -,CG1673 + chrX 13401848 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-439 2139 chrX 13429456 13429495 chrX 13430614 13430634 jockey 8 1159 5.0 4.5 4.8 1.4 1178 chrX 13429456 intergenic not near genes chrX 13430045 intergenic not near genes chrX 13430634 intergenic not near genes chrX_8_13430001 chrX_13430001 RAL-439 2140 chrX 13463628 13463678 chrX 13469225 13469259 mdg3 16 5587 5.5 5.0 5.2 2.6 5631 chrX 13463628 intron Neto + chrX 13466444 intron Neto + chrX 13469259 intron Neto + chrX_16_13465001 chrX_13465001 RAL-439 2141 chrX 13937969 13938004 chrX 13941260 13941269 I-element 9 3285 2.5 0.0 1.2 4.1 3300 chrX 13937969 intron mamo - chrX 13939619 intron mamo - chrX 13941269 intron mamo - chrX_9_13935001 chrX_13935001 RAL-439 2142 chrX 13057299 13057304 chrX 13966949 13966949 5 909646 15.0 4.5 9.8 0.5 909650 chrX 13057299 intron rad + chrX 13512124 intron Neto + chrX 13966949 intron mamo - chrX_5_13510001 chrX_13510001 RAL-439 2143 chrX 14157573 14157610 chrX 14163250 14163272 297 12 5674 8.5 5.0 6.8 1.5 5699 chrX 14157573 intergenic not near genes chrX 14160422 intergenic not near genes chrX 14163272 intergenic not near genes chrX_12_14160001 chrX_14160001 RAL-439 2144 chrX 14302588 14302608 chrX 14302686 14302706 4 96 6.5 3.5 5.0 0.7 118 chrX 14302588 intergenic not near genes chrX 14302647 intergenic not near genes chrX 14302706 intergenic not near genes chrX_4_14300001 chrX_14300001 RAL-439 2145 chrX 14312753 14312777 chrX 14312854 14312878 5 99 8.5 0.0 4.2 1.0 125 chrX 14312753 intergenic not near genes chrX 14312816 intergenic not near genes chrX 14312878 intergenic not near genes chrX_5_14310001 chrX_14310001 RAL-439 2146 chrX 14396841 14396874 chrX 14396928 14396936 9 76 1.5 3.0 2.2 2.8 95 chrX 14396841 intron dpr8 + chrX 14396888 intron dpr8 + chrX 14396936 intron dpr8 + chrX_9_14395001 chrX_14395001 RAL-439 2147 chrX 14416295 14416319 chrX 14421083 14421106 F-element 5 4788 8.5 6.0 7.2 0.6 4811 chrX 14416295 intron dpr8 + chrX 14418700 intron dpr8 + chrX 14421106 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-439 2148 chrX 14448707 14448728 chrX 14448935 14448981 4 247 2.5 3.0 2.8 1.1 274 chrX 14448707 intron dpr8 + chrX 14448844 intron dpr8 + chrX 14448981 intron dpr8 + chrX_4_14445001 chrX_14445001 RAL-439 2149 chrX 14560268 14560296 chrX 14560372 14560400 4 104 1.5 4.0 2.8 1.1 132 chrX 14560268 intergenic not near genes chrX 14560334 intergenic not near genes chrX 14560400 intergenic not near genes chrX_4_14560001 chrX_14560001 RAL-439 2150 chrX 14636458 14636492 chrX 14641904 14641934 I-element 4 5437 2.5 2.5 2.5 1.1 5476 chrX 14636458 intron NetA - chrX 14639196 intron NetA - chrX 14641934 intron NetA - chrX_4_14635001 chrX_14635001 RAL-439 2151 chrX 14778017 14778044 chrX 14782834 14782861 Doc 7 4813 13.5 7.0 10.2 0.6 4844 chrX 14778017 intergenic CG5347 + chrX 14780439 intergenic not near genes chrX 14782861 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-439 2152 chrX 14778045 14778055 chrX 14782831 14782851 Doc 6 4806 9.0 6.5 7.8 0.7 4806 chrX 14778045 intergenic CG5347 + chrX 14780448 intergenic not near genes chrX 14782851 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-439 2153 chrX 14818758 14818795 chrX 14823966 14824019 copia 4 5215 0.5 3.5 2.0 1.3 5261 chrX 14818758 intron rut - chrX 14821388 intron rut - chrX 14824019 intron rut - chrX_4_14820001 chrX_14820001 RAL-439 2154 chrX 14936844 14936885 chrX 14946121 14946162 roo 11 9275 8.5 3.5 6.0 1.6 9318 chrX 14936844 intron pdgy - chrX 14941503 intron pdgy - chrX 14946162 intron pdgy - chrX_11_14940001 chrX_14940001 RAL-439 2155 chrX 14950049 14950097 chrX 14950146 14950146 4 85 4.5 0.0 2.2 1.2 97 chrX 14950049 intron pdgy - chrX 14950098 intron pdgy - chrX 14950146 intron pdgy - chrX_4_14950001 chrX_14950001 RAL-439 2156 chrX 14981686 14981739 chrX 14981785 14981838 10 94 6.0 1.0 3.5 2.2 152 chrX 14981686 intron eag + chrX 14981762 intron eag + chrX 14981838 intron eag + chrX_10_14980001 chrX_14980001 RAL-439 2157 chrX 15019095 15019098 chrX 21183367 21183384 4 6164293 23.5 3.0 13.2 0.3 6164289 chrX 15019095 intron hiw - chrX 18101240 5` UTR CG7192 - chrX 21183384 intergenic not near genes chrX_4_18100001 chrX_18100001 RAL-439 2158 chrX 15070164 15070357 chrX 15070277 15070412 11 107 0.0 0.0 0.0 11.0 248 chrX 15070164 3` UTR Lsd-2 - chrX 15070288 3` UTR Lsd-2 - chrX 15070412 3` UTR Lsd-2 - chrX_11_15070001 chrX_15070001 RAL-439 2159 chrX 15116881 15116932 chrX 15117018 15117069 11 132 5.5 7.0 6.2 1.5 188 chrX 15116881 intergenic Cyp4s3 - chrX 15116975 intergenic Cyp4s3 - chrX 15117069 intergenic not near genes chrX_11_15115001 chrX_15115001 RAL-439 2160 chrX 15226559 15226574 chrX 15226874 15226907 4 329 0.0 4.0 2.0 1.3 348 chrX 15226559 intergenic CR44430 + chrX 15226733 intergenic CR44430 + chrX 15226907 intergenic not near genes chrX_4_15225001 chrX_15225001 RAL-439 2161 chrX 15277615 15277668 chrX 15277720 15277773 15 95 3.5 3.0 3.2 3.6 158 chrX 15277615 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277773 intergenic not near genes chrX_15_15275001 chrX_15275001 RAL-439 2162 chrX 15358287 15358341 chrX 15358395 15358428 18 100 3.0 2.5 2.8 4.7 141 chrX 15358287 intron acj6 - chrX 15358358 intron acj6 - chrX 15358428 intron acj6 - chrX_18_15355001 chrX_15355001 RAL-439 2163 chrX 15413064 15413078 chrX 15417350 15417400 Juan 5 4304 3.0 2.0 2.5 1.4 4336 chrX 15413064 intron Cngl - chrX 15415232 intron Cngl - chrX 15417400 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-439 2164 chrX 15421912 15421940 chrX 15423436 15423463 pogo 7 1524 3.5 6.0 4.8 1.2 1551 chrX 15421912 intron Cngl - chrX 15422688 intron Cngl - chrX 15423463 intron Cngl - chrX_7_15420001 chrX_15420001 RAL-439 2165 chrX 15455533 15455551 chrX 15455630 15455643 4 94 4.5 5.0 4.8 0.7 110 chrX 15455533 3` UTR CG11655 + chrX 15455588 3` UTR shtd - chrX 15455643 3` UTR shtd - chrX_4_15455001 chrX_15455001 RAL-439 2166 chrX 15565623 15565670 chrX 15565721 15565766 14 98 5.0 3.0 4.0 2.8 143 chrX 15565623 intergenic not near genes chrX 15565694 intergenic not near genes chrX 15565766 intergenic not near genes chrX_14_15565001 chrX_15565001 RAL-439 2167 chrX 15671177 15671184 chrX 15671284 15671291 4 107 5.0 0.5 2.8 1.1 114 chrX 15671177 intergenic CG15646 - chrX 15671234 intergenic CG15646 - chrX 15671291 intergenic CG15646 - chrX_4_15670001 chrX_15670001 RAL-439 2168 chrX 15671186 15671204 chrX 15671266 15671301 6 99 4.0 0.0 2.0 2.0 115 chrX 15671186 intergenic CG15646 - chrX 15671244 intergenic CG15646 - chrX 15671301 intergenic CG15646 - chrX_6_15670001 chrX_15670001 RAL-439 2169 chrX 15749655 15749671 chrX 15749778 15749794 7 123 3.0 1.5 2.2 2.2 139 chrX 15749655 intron CG8239 + chrX 15749724 intron CG8239 + chrX 15749794 intron CG8239 + chrX_7_15745001 chrX_15745001 RAL-439 2170 chrX 15749673 15749685 chrX 15749762 15749808 4 112 1.5 0.5 1.0 2.0 135 chrX 15749673 intron CG8239 + chrX 15749740 intron CG8239 + chrX 15749808 intron CG8239 + chrX_4_15745001 chrX_15745001 RAL-439 2171 chrX 16222757 16222803 chrX 16231126 16231173 roo 13 8360 5.0 4.5 4.8 2.2 8416 chrX 16222757 intergenic not near genes chrX 16226965 intergenic not near genes chrX 16231173 intergenic not near genes chrX_13_16225001 chrX_16225001 RAL-439 2172 chrX 16245934 16245953 chrX 16246061 16246080 INE-1 11 126 10.5 7.5 9.0 1.1 146 chrX 16245934 intergenic not near genes chrX 16246007 intergenic not near genes chrX 16246080 intergenic not near genes chrX_11_16245001 chrX_16245001 RAL-439 2173 chrX 16340658 16340698 chrX 16349833 16349875 roo 6 9176 0.5 6.0 3.2 1.4 9217 chrX 16340658 intergenic Dsp1 + chrX 16345266 intergenic not near genes chrX 16349875 intergenic sl + chrX_6_16345001 chrX_16345001 RAL-439 2174 chrX 16492634 16492676 chrX 16498221 16498233 mdg3 17 5591 5.0 2.5 3.8 3.5 5599 chrX 16492634 intron para - chrX 16495434 intron para - chrX 16498233 intron para - chrX_17_16495001 chrX_16495001 RAL-439 2175 chrX 16785270 16785306 chrX 16785389 16785418 13 120 3.0 3.5 3.2 3.1 148 chrX 16785270 3` UTR CG9609 - chrX 16785344 3` UTR CG9609 - chrX 16785418 3` UTR CG9609 - chrX_13_16785001 chrX_16785001 RAL-439 2176 chrX 16833200 16833220 chrX 16833303 16833325 4 104 2.5 1.0 1.8 1.4 125 chrX 16833200 intron CG13004 - chrX 16833262 intron CG13004 - chrX 16833325 intron CG13004 - chrX_4_16830001 chrX_16830001 RAL-439 2177 chrX 16870072 16870098 chrX 16870169 16870201 8 96 1.5 1.0 1.2 3.6 129 chrX 16870072 intron CG13003 - chrX 16870136 intron CG13003 - chrX 16870201 intron CG13003 - chrX_8_16870001 chrX_16870001 RAL-439 2178 chrX 17057917 17057950 chrX 17058178 17058211 pogo 4 261 1.0 4.0 2.5 1.1 294 chrX 17057917 intron CG45002 - chrX 17058064 intron CG45002 - chrX 17058211 intron CG45002 - chrX_4_17055001 chrX_17055001 RAL-439 2179 chrX 17063159 17063207 chrX 17063266 17063314 14 105 5.0 1.5 3.2 3.3 155 chrX 17063159 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063314 intron CG45002 - chrX_14_17060001 chrX_17060001 RAL-439 2180 chrX 17112247 17112252 chrX 17112349 17112354 4 102 0.5 11.5 6.0 0.6 107 chrX 17112247 intron CG5004 + chrX 17112300 intron CG5004 + chrX 17112354 intron CG5004 + chrX_4_17110001 chrX_17110001 RAL-439 2181 chrX 17161327 17161374 chrX 17161552 17161553 10 217 3.0 6.0 4.5 1.8 226 chrX 17161327 intron baz + chrX 17161440 intron baz + chrX 17161553 intron baz + chrX_10_17160001 chrX_17160001 RAL-439 2182 chrX 17195220 17195231 chrX 17200317 17200335 flea 5 5103 6.5 6.5 6.5 0.7 5115 chrX 17195220 3` UTR baz + chrX 17197778 3` UTR baz + chrX 17200335 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-439 2183 chrX 17205829 17205857 chrX 17205939 17205951 13 106 4.0 6.0 5.0 2.2 122 chrX 17205829 intergenic not near genes chrX 17205890 intergenic not near genes chrX 17205951 intergenic CG32564 + chrX_13_17205001 chrX_17205001 RAL-439 2184 chrX 17237511 17237518 chrX 17237615 17237622 4 104 6.5 6.5 6.5 0.5 111 chrX 17237511 intron f + chrX 17237566 intron f + chrX 17237622 intron f + chrX_4_17235001 chrX_17235001 RAL-439 2185 chrX 17290055 17290096 chrX 17290145 17290192 16 95 3.5 5.0 4.2 3.1 137 chrX 17290055 intron,intron CG5445 +,Fim - chrX 17290124 intron,intron CG5445 +,Fim - chrX 17290192 intron,intron CG5445 +,Fim - chrX_16_17290001 chrX_17290001 RAL-439 2186 chrX 17352576 17352620 chrX 17352690 17352743 7 114 0.5 5.0 2.8 1.8 167 chrX 17352576 intergenic not near genes chrX 17352660 intergenic not near genes chrX 17352743 intergenic not near genes chrX_7_17350001 chrX_17350001 RAL-439 2187 chrX 17357525 17357530 chrX 17357639 17357644 4 114 2.5 0.5 1.5 1.6 119 chrX 17357525 intergenic not near genes chrX 17357584 intergenic not near genes chrX 17357644 intergenic not near genes chrX_4_17355001 chrX_17355001 RAL-439 2188 chrX 17362491 17362504 chrX 17362585 17362616 4 104 2.5 3.0 2.8 1.1 125 chrX 17362491 intergenic not near genes chrX 17362554 intergenic not near genes chrX 17362616 intergenic not near genes chrX_4_17360001 chrX_17360001 RAL-439 2189 chrX 17418127 17418160 chrX 17418568 17418606 5 442 33.5 25.0 29.2 0.2 479 chrX 17418127 intron CG8611 - chrX 17418366 intron CG8611 - chrX 17418606 intron CG8611 - chrX_5_17415001 chrX_17415001 RAL-439 2190 chrX 17455766 17455812 chrX 17455881 17455923 9 117 6.5 5.5 6.0 1.3 157 chrX 17455766 intergenic not near genes chrX 17455844 intergenic not near genes chrX 17455923 intergenic not near genes chrX_9_17455001 chrX_17455001 RAL-439 2191 chrX 17502330 17502358 chrX 17502430 17502458 5 94 8.5 3.0 5.8 0.7 128 chrX 17502330 intron CG43658 - chrX 17502394 intron CG43658 - chrX 17502458 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-439 2192 chrX 17545008 17545009 chrX 17545105 17545111 4 100 12.0 3.5 7.8 0.5 103 chrX 17545008 intron CG43658 - chrX 17545060 intron CG43658 - chrX 17545111 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-439 2193 chrX 17546955 17546986 chrX 17547103 17547139 4 152 3.0 3.5 3.2 1.0 184 chrX 17546955 intron CG43658 - chrX 17547047 intron CG43658 - chrX 17547139 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-439 2194 chrX 17680894 17680924 chrX 17680985 17681019 6 95 2.0 4.5 3.2 1.4 125 chrX 17680894 intron chas - chrX 17680956 intron chas - chrX 17681019 intron chas - chrX_6_17680001 chrX_17680001 RAL-439 2195 chrX 17731648 17731670 chrX 17731718 17731768 8 92 2.5 1.5 2.0 2.7 120 chrX 17731648 intron CG42684 + chrX 17731708 intron CG42684 + chrX 17731768 intron CG42684 + chrX_8_17730001 chrX_17730001 RAL-439 2196 chrX 17968873 17968925 chrX 17969012 17969062 13 137 4.0 5.0 4.5 2.4 189 chrX 17968873 intron Sh - chrX 17968968 intron Sh - chrX 17969062 intron Sh - chrX_13_17965001 chrX_17965001 RAL-439 2197 chrX 18122813 18122838 chrX 18122894 18122904 10 81 2.0 7.5 4.8 1.7 91 chrX 18122813 5` UTR CR45606 + chrX 18122858 5` UTR CR45606 + chrX 18122904 5` UTR CR45606 + chrX_10_18120001 chrX_18120001 RAL-439 2198 chrX 18194047 18194099 chrX 18194602 18194652 BS 12 550 4.0 2.5 3.2 2.9 605 chrX 18194047 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194652 intron Frq2 + chrX_12_18190001 chrX_18190001 RAL-439 2199 chrX 18337437 18337449 chrX 18337528 18337569 6 106 6.5 4.0 5.2 1.0 132 chrX 18337437 intron CG6123 - chrX 18337503 intron CG6123 - chrX 18337569 intron CG6123 - chrX_6_18335001 chrX_18335001 RAL-439 2200 chrX 18429475 18429524 chrX 18434806 18434826 Transpac 8 5321 2.5 6.0 4.2 1.5 5351 chrX 18429475 intergenic not near genes chrX 18432150 intergenic not near genes chrX 18434826 intergenic not near genes chrX_8_18430001 chrX_18430001 RAL-439 2201 chrX 18467241 18467248 chrX 18467390 18467431 8 166 1.5 5.5 3.5 1.8 190 chrX 18467241 intron CG32547 - chrX 18467336 intron CG32547 - chrX 18467431 intron CG32547 - chrX_8_18465001 chrX_18465001 RAL-439 2202 chrX 18558758 18558806 chrX 18558860 18558900 10 97 0.5 3.5 2.0 3.3 142 chrX 18558758 intron Bx + chrX 18558829 intron Bx + chrX 18558900 intron Bx + chrX_10_18555001 chrX_18555001 RAL-439 2203 chrX 18644994 18645044 chrX 18645112 18645162 13 111 3.5 3.0 3.2 3.1 168 chrX 18644994 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645162 intron Rip11 - chrX_13_18645001 chrX_18645001 RAL-439 2204 chrX 18698828 18698878 chrX 18698965 18699005 8 133 4.0 4.5 4.2 1.5 177 chrX 18698828 intergenic not near genes chrX 18698916 intergenic not near genes chrX 18699005 intergenic not near genes chrX_8_18695001 chrX_18695001 RAL-439 2205 chrX 18896500 18896546 chrX 18896630 18896677 18 128 4.5 2.0 3.2 4.3 177 chrX 18896500 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896677 intergenic CG7349 + chrX_18_18895001 chrX_18895001 RAL-439 2206 chrX 18947482 18947534 chrX 18947595 18947627 10 98 1.5 6.5 4.0 2.0 145 chrX 18947482 intron CG43759 + chrX 18947554 intron CG43759 + chrX 18947627 intron CG43759 + chrX_10_18945001 chrX_18945001 RAL-439 2207 chrX 18957054 18957088 chrX 18965737 18965772 roo 9 8681 3.0 3.5 3.2 2.1 8718 chrX 18957054 intron CG43759 + chrX 18961413 intron CG43759 + chrX 18965772 intron CG43759 + chrX_9_18960001 chrX_18960001 RAL-439 2208 chrX 19020568 19020619 chrX 19020666 19020717 13 95 5.0 5.5 5.2 2.1 149 chrX 19020568 intron CG43759 + chrX 19020642 intron CG43759 + chrX 19020717 intron CG43759 + chrX_13_19020001 chrX_19020001 RAL-439 2209 chrX 19060396 19060439 chrX 19065199 19065243 Doc 10 4800 6.5 4.5 5.5 1.5 4847 chrX 19060396 intron CG14190 + chrX 19062820 intron CG14190 + chrX 19065243 intron CG14190 + chrX_10_19060001 chrX_19060001 RAL-439 2210 chrX 19073676 19073694 chrX 19073783 19073791 5 104 5.0 5.0 5.0 0.8 115 chrX 19073676 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073791 intergenic not near genes chrX_5_19070001 chrX_19070001 RAL-439 2211 chrX 19098741 19098782 chrX 19098838 19098880 7 95 4.5 1.5 3.0 1.8 139 chrX 19098741 intergenic not near genes chrX 19098810 intergenic not near genes chrX 19098880 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-439 2212 chrX 19109111 19109131 chrX 19109299 19109334 6 200 1.0 2.0 1.5 2.4 223 chrX 19109111 intergenic not near genes chrX 19109222 intergenic not near genes chrX 19109334 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-439 2213 chrX 19119682 19119708 chrX 19119788 19119814 8 102 7.0 0.0 3.5 1.8 132 chrX 19119682 intergenic not near genes chrX 19119748 intergenic not near genes chrX 19119814 intergenic not near genes chrX_8_19115001 chrX_19115001 RAL-439 2214 chrX 19136536 19136583 chrX 19143474 19143496 412 9 6924 1.5 1.0 1.2 4.1 6960 chrX 19136536 intergenic not near genes chrX 19140016 intergenic not near genes chrX 19143496 3` UTR RhoGAP18B - chrX_9_19140001 chrX_19140001 RAL-439 2215 chrX 19249611 19249638 chrX 19256377 19256409 5 6761 8.5 6.0 7.2 0.6 6798 chrX 19249611 intron Hs3st-B + chrX 19253010 exon rictor - chrX 19256409 exon rictor - chrX_5_19250001 chrX_19250001 RAL-439 2216 chrX 19356969 19357013 chrX 19358430 19358464 NOF 10 1460 7.0 4.0 5.5 1.5 1495 chrX 19356969 intron kek5 + chrX 19357716 intron kek5 + chrX 19358464 intron kek5 + chrX_10_19355001 chrX_19355001 RAL-439 2217 chrX 19541402 19541439 chrX 19541502 19541518 4 90 5.0 2.5 3.8 0.8 116 chrX 19541402 intron CG32532 - chrX 19541460 intron CG32532 - chrX 19541518 intron CG32532 - chrX_4_19540001 chrX_19540001 RAL-439 2218 chrX 19560655 19560689 chrX 19560774 19560801 14 117 4.0 7.5 5.8 2.1 146 chrX 19560655 3` UTR Grip84 - chrX 19560728 3` UTR Grip84 - chrX 19560801 3` UTR Grip84 - chrX_14_19560001 chrX_19560001 RAL-439 2219 chrX 19576538 19576591 chrX 19576636 19576676 6 91 0.5 2.0 1.2 2.7 138 chrX 19576538 intron Tao - chrX 19576607 intron Tao - chrX 19576676 intron Tao - chrX_6_19575001 chrX_19575001 RAL-439 2220 chrX 19593939 19593974 chrX 19594044 19594079 7 105 1.5 1.0 1.2 3.2 140 chrX 19593939 exon CG14205 + chrX 19594009 intron CG14205 + chrX 19594079 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-439 2221 chrX 19762579 19762616 chrX 19762674 19762674 9 92 2.0 5.0 3.5 2.0 95 chrX 19762579 5` UTR CG12702 - chrX 19762626 5` UTR CG12702 - chrX 19762674 5` UTR CG12702 - chrX_9_19760001 chrX_19760001 RAL-439 2222 chrX 19821739 19821747 chrX 19821850 19821858 4 111 4.0 4.5 4.2 0.8 119 chrX 19821739 intergenic not near genes chrX 19821798 intergenic not near genes chrX 19821858 intergenic not near genes chrX_4_19820001 chrX_19820001 RAL-439 2223 chrX 19881440 19881483 chrX 19881539 19881584 18 92 5.0 5.5 5.2 2.9 144 chrX 19881440 intron Hers + chrX 19881512 intron Hers + chrX 19881584 intron Hers + chrX_18_19880001 chrX_19880001 RAL-439 2224 chrX 19897375 19897415 chrX 19897457 19897512 9 92 8.0 4.5 6.2 1.2 137 chrX 19897375 intron Hers + chrX 19897444 intron Hers + chrX 19897512 intron Hers + chrX_9_19895001 chrX_19895001 RAL-439 2225 chrX 20041528 20041561 chrX 20041618 20041661 15 98 3.0 4.5 3.8 3.1 133 chrX 20041528 intron Dop2R - chrX 20041594 intron Dop2R - chrX 20041661 intron Dop2R - chrX_15_20040001 chrX_20040001 RAL-439 2226 chrX 20043519 20043541 chrX 20043623 20043645 4 102 1.0 4.5 2.8 1.1 126 chrX 20043519 intron Dop2R - chrX 20043582 intron Dop2R - chrX 20043645 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-439 2227 chrX 20124067 20124092 chrX 20124226 20124226 9 153 8.0 3.0 5.5 1.4 159 chrX 20124067 intron CG34331 + chrX 20124146 intron CG34331 + chrX 20124226 intron CG34331 + chrX_9_20120001 chrX_20120001 RAL-439 2228 chrX 20279736 20279777 chrX 20279837 20279838 8 94 4.5 8.0 6.2 1.1 102 chrX 20279736 intergenic not near genes chrX 20279787 intergenic not near genes chrX 20279838 intergenic not near genes chrX_8_20275001 chrX_20275001 RAL-439 2229 chrX 20312863 20312908 chrX 20312961 20312983 14 91 1.5 7.0 4.2 2.7 120 chrX 20312863 intron CG1504 - chrX 20312923 intron CG1504 - chrX 20312983 intron CG1504 - chrX_14_20310001 chrX_20310001 RAL-439 2230 chrX 20369299 20369343 chrX 20369403 20369447 15 97 1.5 2.5 2.0 5.0 148 chrX 20369299 intergenic not near genes chrX 20369373 intergenic not near genes chrX 20369447 intergenic not near genes chrX_15_20365001 chrX_20365001 RAL-439 2231 chrX 20377328 20377343 chrX 20378807 20378820 hobo 6 1481 3.0 1.0 2.0 2.0 1492 chrX 20377328 intergenic not near genes chrX 20378074 intergenic not near genes chrX 20378820 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-439 2232 chrX 20383801 20383821 chrX 20383891 20383916 7 98 3.0 0.5 1.8 2.5 115 chrX 20383801 intergenic not near genes chrX 20383858 intergenic not near genes chrX 20383916 intergenic not near genes chrX_7_20380001 chrX_20380001 RAL-439 2233 chrX 20443167 20443179 chrX 20443263 20443265 5 92 3.5 3.0 3.2 1.2 98 chrX 20443167 exon CG1695 + chrX 20443216 intron CG1695 + chrX 20443265 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-439 2234 chrX 20443181 20443196 chrX 20443262 20443287 5 88 3.0 3.0 3.0 1.2 106 chrX 20443181 intron CG1695 + chrX 20443234 intron CG1695 + chrX 20443287 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-439 2235 chrX 20484371 20484394 chrX 20484496 20484519 6 122 4.0 6.5 5.2 1.0 148 chrX 20484371 intron RhoGAP19D - chrX 20484445 intron RhoGAP19D - chrX 20484519 intron RhoGAP19D - chrX_6_20480001 chrX_20480001 RAL-439 2236 chrX 20493910 20493927 chrX 20494090 20494108 5 180 0.0 12.5 6.2 0.7 198 chrX 20493910 intron RhoGAP19D - chrX 20494009 intron RhoGAP19D - chrX 20494108 intron RhoGAP19D - chrX_5_20490001 chrX_20490001 RAL-439 2237 chrX 20504115 20504149 chrX 20505647 20505675 transib2 4 1535 7.0 2.5 4.8 0.7 1560 chrX 20504115 intron RhoGAP19D - chrX 20504895 intron RhoGAP19D - chrX 20505675 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-439 2238 chrX 20528588 20528632 chrX 20528956 20528995 9 362 2.5 4.0 3.2 2.1 407 chrX 20528588 intergenic not near genes chrX 20528792 intergenic not near genes chrX 20528995 intergenic not near genes chrX_9_20525001 chrX_20525001 RAL-439 2239 chrX 20546530 20546568 chrX 20546716 20546754 12 180 6.0 3.0 4.5 2.2 224 chrX 20546530 intron RunxB + chrX 20546642 intron RunxB + chrX 20546754 intron RunxB + chrX_12_20545001 chrX_20545001 RAL-439 2240 chrX 20635414 20635446 chrX 20635600 20635611 8 183 2.5 4.5 3.5 1.8 197 chrX 20635414 intergenic not near genes chrX 20635512 intergenic not near genes chrX 20635611 intergenic not near genes chrX_8_20635001 chrX_20635001 RAL-439 2241 chrX 20636399 20636439 chrX 20636493 20636538 12 97 3.5 5.0 4.2 2.3 139 chrX 20636399 intergenic not near genes chrX 20636468 intergenic not near genes chrX 20636538 intergenic not near genes chrX_12_20635001 chrX_20635001 RAL-439 2242 chrX 20645326 20645359 chrX 20645544 20645577 7 217 4.5 3.0 3.8 1.5 251 chrX 20645326 intergenic not near genes chrX 20645452 intergenic not near genes chrX 20645577 intergenic not near genes chrX_7_20645001 chrX_20645001 RAL-439 2243 chrX 20836712 20836759 chrX 20844334 20844371 roo 4 7618 2.5 2.0 2.2 1.2 7659 chrX 20836712 intron shakB - chrX 20840542 intron shakB - chrX 20844371 intron shakB - chrX_4_20840001 chrX_20840001 RAL-439 2244 chrX 20915028 20915074 chrX 20915219 20915245 7 187 7.0 5.5 6.2 1.0 217 chrX 20915028 intron shakB - chrX 20915136 intron shakB - chrX 20915245 intron shakB - chrX_7_20915001 chrX_20915001 RAL-439 2245 chrX 20940721 20940739 chrX 20942187 20942228 hobo 5 1482 2.5 1.0 1.8 1.8 1507 chrX 20940721 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942228 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-439 2246 chrX 21061880 21061892 chrX 21062379 21062394 roo 4 502 5.5 5.0 5.2 0.6 514 chrX 21061880 intron bves + chrX 21062137 intron bves + chrX 21062394 intron,3` UTR bves +,CG32512 - chrX_4_21060001 chrX_21060001 RAL-439 2247 chrX 21086115 21086138 chrX 21087164 21087173 jockey 6 1046 8.5 4.5 6.5 0.8 1058 chrX 21086115 intergenic not near genes chrX 21086644 intergenic not near genes chrX 21087173 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-439 2248 chrX 21166126 21166164 chrX 21166219 21166265 4 98 4.0 5.5 4.8 0.7 139 chrX 21166126 intergenic not near genes chrX 21166196 intergenic not near genes chrX 21166265 intergenic not near genes chrX_4_21165001 chrX_21165001 RAL-439 2249 chrX 21218792 21218817 chrX 21218879 21218920 8 96 4.5 3.0 3.8 1.7 128 chrX 21218792 intron,3` UTR CG32521 -,CG32523 + chrX 21218856 intron CG32521 - chrX 21218920 intron CG32521 - chrX_8_21215001 chrX_21215001 RAL-439 2250 chrX 21328098 21328148 chrX 21328229 21328279 22 123 3.0 2.5 2.8 5.8 181 chrX 21328098 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328279 intergenic CG1486 +,tty - chrX_22_21325001 chrX_21325001 RAL-439 2251 chrX 21358082 21358093 chrX 21358162 21358169 5 91 6.5 1.0 3.8 1.0 87 chrX 21358082 intergenic sol +,Sep1 + chrX 21358126 intergenic Sep1 +,sol + chrX 21358169 intergenic Sep1 +,sol + chrX_5_21355001 chrX_21355001 RAL-439 2252 chrX 21419195 21419233 chrX 21419300 21419338 12 101 7.0 4.0 5.5 1.8 143 chrX 21419195 intergenic not near genes chrX 21419266 intergenic not near genes chrX 21419338 intergenic not near genes chrX_12_21415001 chrX_21415001 RAL-439 2253 chrX 21434039 21434049 chrX 21434761 21434774 INE-1 4 734 1.0 4.0 2.5 1.1 735 chrX 21434039 intron CG42343 - chrX 21434406 intron CG42343 - chrX 21434774 intron CG42343 - chrX_4_21430001 chrX_21430001 RAL-439 2254 chrX 21455200 21455237 chrX 21455394 21455443 5 204 3.5 0.0 1.8 1.8 243 chrX 21455200 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455443 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-439 2255 chrX 21458695 21458728 chrX 21464133 21464183 Ivk 8 5444 0.0 1.5 0.8 4.4 5488 chrX 21458695 intergenic not near genes chrX 21461439 intergenic not near genes chrX 21464183 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-439 2256 chrX 21474386 21474435 chrX 21474772 21474821 1731 7 383 1.0 0.5 0.8 3.9 435 chrX 21474386 intergenic not near genes chrX 21474604 intergenic not near genes chrX 21474821 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-439 2257 chrX 21565396 21565414 chrX 21565494 21565512 6 94 1.0 3.0 2.0 2.0 116 chrX 21565396 intergenic not near genes chrX 21565454 intergenic not near genes chrX 21565512 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-439 2258 chrX 21565419 21565443 chrX 21565492 21565526 7 88 0.5 3.0 1.8 2.5 107 chrX 21565419 intergenic not near genes chrX 21565472 intergenic not near genes chrX 21565526 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-439 2259 chrX 21581548 21581569 chrX 21581639 21581645 7 85 2.0 0.5 1.2 3.2 97 chrX 21581548 intergenic not near genes chrX 21581596 intergenic not near genes chrX 21581645 intergenic not near genes chrX_7_21580001 chrX_21580001 RAL-439 2260 chrX 21624899 21624945 chrX 21625004 21625006 9 95 3.5 1.0 2.2 2.8 107 chrX 21624899 3` UTR DIP1 - chrX 21624952 3` UTR DIP1 - chrX 21625006 3` UTR DIP1 - chrX_9_21620001 chrX_21620001 RAL-439 2261 chrX 21668242 21668288 chrX 21668342 21668362 14 95 2.5 1.0 1.8 5.0 120 chrX 21668242 intergenic not near genes chrX 21668302 intergenic not near genes chrX 21668362 intergenic not near genes chrX_14_21665001 chrX_21665001 RAL-439 2262 chrX 22478881 22478891 chrX 22479034 22479044 5 151 0.0 8.0 4.0 1.0 163 chrX 22478881 intron CG12576 - chrX 22478962 intron CG12576 - chrX 22479044 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-439 2263 chrX 22478892 22478895 chrX 22479020 22479048 5 148 0.0 5.0 2.5 1.4 156 chrX 22478892 intron CG12576 - chrX 22478970 intron CG12576 - chrX 22479048 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-439 2264 chrX 22544419 22544444 chrX 22544519 22544544 4 100 1.5 2.0 1.8 1.4 125 chrX 22544419 intergenic CG17599 - chrX 22544482 intergenic CG17599 - chrX 22544544 intergenic CG17599 - chrX_4_22540001 chrX_22540001 RAL-439 2265 chrX 22697495 22697502 chrX 22701812 22701819 Juan 5 4317 8.0 6.5 7.2 0.6 4324 chrX 22697495 intron CR44997 + chrX 22699657 intron CR44997 + chrX 22701819 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-439 2266 chrX 22697504 22697513 chrX 22701805 22701830 Juan 6 4308 6.0 6.0 6.0 0.9 4326 chrX 22697504 intron CR44997 + chrX 22699667 intron CR44997 + chrX 22701830 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-439 2267 chrX 22811987 22812002 chrX 22816764 22816794 F-element 5 4785 8.0 2.5 5.2 0.8 4807 chrX 22811987 intergenic CG12446 - chrX 22814390 intergenic not near genes chrX 22816794 intergenic not near genes chrX_5_22810001 chrX_22810001 RAL-439 2268 chrX 22898844 22898870 chrX 22899261 22899264 5 409 1.5 0.0 0.8 2.8 420 chrX 22898844 intergenic not near genes chrX 22899054 intergenic not near genes chrX 22899264 intergenic not near genes chrX_5_22895001 chrX_22895001 RAL-439 2269 chrX 22982846 22982860 chrX 22983023 22983063 4 195 3.0 4.5 3.8 0.8 217 chrX 22982846 intron,intron stnA -,stnB - chrX 22982954 intron,intron stnA -,stnB - chrX 22983063 intron,intron stnA -,stnB - chrX_4_22980001 chrX_22980001 RAL-439 2270 chrX 22987110 22987127 chrX 22989764 22989805 Burdock 6 2668 4.5 1.0 2.8 1.6 2695 chrX 22987110 intron,intron stnA -,stnB - chrX 22988458 intron,intron stnA -,stnB - chrX 22989805 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-439 2271 chrX 22996300 22996329 chrX 23003548 23003583 roo 6 7247 4.0 5.0 4.5 1.1 7283 chrX 22996300 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003583 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-439 2272 chrY 1419897 1419919 chrY 1420171 1420193 5 274 13.5 14.5 14.0 0.3 296 chrY 1419897 intergenic not near genes chrY 1420045 intergenic not near genes chrY 1420193 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-439 2273 chrY 1420499 1420499 chrY 1420759 1420775 4 235 19.5 19.0 19.2 0.2 276 chrY 1420499 intergenic not near genes chrY 1420637 intergenic not near genes chrY 1420775 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-439 2274 chrY 1420991 1421006 chrY 1421890 1421898 4 897 15.5 5.0 10.2 0.4 907 chrY 1420991 intergenic not near genes chrY 1421444 intergenic not near genes chrY 1421898 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-439