SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 89710 89748 chr2L 89806 89835 4 93 4.0 2.5 3.2 1.0 125 chr2L 89710 intergenic not near genes chr2L 89772 intergenic not near genes chr2L 89835 intergenic not near genes chr2L_4_85001 chr2L_85001 RAL-42 2 chr2L 263286 263315 chr2L 263452 263481 7 166 1.0 4.5 2.8 1.8 195 chr2L 263286 intron,3` UTR CG3645 -,CG17075 - chr2L 263384 intron,3` UTR CG3645 -,CG17075 - chr2L 263481 intron,3` UTR CG3645 -,CG17075 - chr2L_7_260001 chr2L_260001 RAL-42 3 chr2L 276549 276567 chr2L 276646 276670 6 98 9.0 8.0 8.5 0.6 121 chr2L 276549 intron CG17078 - chr2L 276610 intron CG17078 - chr2L 276670 intron CG17078 - chr2L_6_275001 chr2L_275001 RAL-42 4 chr2L 297664 297711 chr2L 297784 297830 12 119 2.5 2.0 2.2 3.8 166 chr2L 297664 intergenic Hop +,Pi3K21B + chr2L 297747 intergenic Pi3K21B +,Hop + chr2L 297830 intergenic Pi3K21B +,Hop + chr2L_12_295001 chr2L_295001 RAL-42 5 chr2L 325123 325134 chr2L 325208 325231 4 94 0.5 2.0 1.2 1.8 108 chr2L 325123 intron Plc21C + chr2L 325177 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-42 6 chr2L 347865 347918 chr2L 355385 355438 blood 10 7520 2.5 4.0 3.2 2.4 7573 chr2L 347865 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355438 3` UTR Plc21C + chr2L_10_350001 chr2L_350001 RAL-42 7 chr2L 371425 371456 chr2L 371524 371555 8 99 4.0 4.0 4.0 1.6 130 chr2L 371425 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371555 intergenic not near genes chr2L_8_370001 chr2L_370001 RAL-42 8 chr2L 407927 407971 chr2L 408028 408072 16 100 6.5 5.5 6.0 2.3 145 chr2L 407927 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408072 3` UTR AP-2alpha - chr2L_16_405001 chr2L_405001 RAL-42 9 chr2L 422084 422126 chr2L 422215 422223 4 116 1.0 0.5 0.8 2.2 139 chr2L 422084 exon CG13692 + chr2L 422154 exon CG13692 + chr2L 422223 intron CG13692 + chr2L_4_420001 chr2L_420001 RAL-42 10 chr2L 544808 544860 chr2L 544911 544963 12 103 5.5 7.0 6.2 1.7 155 chr2L 544808 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544886 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544963 3` UTR Ets21C - chr2L_12_540001 chr2L_540001 RAL-42 11 chr2L 686918 686944 chr2L 695978 696004 roo 4 9059 2.0 8.0 5.0 0.7 9086 chr2L 686918 intron ds - chr2L 691461 intron ds - chr2L 696004 intron ds - chr2L_4_690001 chr2L_690001 RAL-42 12 chr2L 736859 736902 chr2L 736983 737027 11 125 3.0 3.0 3.0 2.8 168 chr2L 736859 intergenic Eaat2 - chr2L 736943 intergenic Eaat2 - chr2L 737027 intergenic Eaat2 - chr2L_11_735001 chr2L_735001 RAL-42 13 chr2L 844944 844970 chr2L 845051 845077 6 105 2.5 7.5 5.0 1.0 133 chr2L 844944 intron drongo - chr2L 845010 intron drongo - chr2L 845077 intron drongo - chr2L_6_845001 chr2L_845001 RAL-42 14 chr2L 922445 922491 chr2L 922546 922592 14 100 4.5 3.0 3.8 2.9 147 chr2L 922445 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922592 intergenic CG4341 + chr2L_14_920001 chr2L_920001 RAL-42 15 chr2L 976859 976913 chr2L 984515 984569 roo 11 7656 3.5 4.0 3.8 2.3 7710 chr2L 976859 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984569 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-42 16 chr2L 996706 996752 chr2L 1005821 1005867 roo 7 9115 3.0 5.0 4.0 1.4 9161 chr2L 996706 intergenic not near genes chr2L 1001286 intergenic not near genes chr2L 1005867 intergenic not near genes chr2L_7_1000001 chr2L_1000001 RAL-42 17 chr2L 1035540 1035584 chr2L 1035637 1035680 6 95 5.0 3.5 4.2 1.2 140 chr2L 1035540 intron IA-2 - chr2L 1035610 intron IA-2 - chr2L 1035680 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-42 18 chr2L 1045362 1045382 chr2L 1045468 1045479 5 103 7.0 6.5 6.8 0.6 117 chr2L 1045362 intron IA-2 - chr2L 1045420 intron IA-2 - chr2L 1045479 intron IA-2 - chr2L_5_1045001 chr2L_1045001 RAL-42 19 chr2L 1066077 1066081 chr2L 1066178 1066182 6 101 11.5 4.5 8.0 0.7 105 chr2L 1066077 intron S - chr2L 1066130 intron S - chr2L 1066182 intron S - chr2L_6_1065001 chr2L_1065001 RAL-42 20 chr2L 1066084 1066124 chr2L 1066175 1066203 7 96 2.5 4.5 3.5 1.6 119 chr2L 1066084 intron S - chr2L 1066144 intron S - chr2L 1066203 intron S - chr2L_7_1065001 chr2L_1065001 RAL-42 21 chr2L 1212971 1213019 chr2L 1213074 1213122 7 103 1.5 2.0 1.8 2.5 151 chr2L 1212971 intergenic not near genes chr2L 1213046 intergenic not near genes chr2L 1213122 intergenic not near genes chr2L_7_1210001 chr2L_1210001 RAL-42 22 chr2L 1220110 1220161 chr2L 1227596 1227640 blood 13 7483 5.5 5.0 5.2 2.1 7530 chr2L 1220110 intron CG42329 + chr2L 1223875 intron CG42329 + chr2L 1227640 intron CG42329 + chr2L_13_1220001 chr2L_1220001 RAL-42 23 chr2L 1287272 1287316 chr2L 1287368 1287410 10 95 5.0 6.5 5.8 1.5 138 chr2L 1287272 intron robo3 + chr2L 1287341 intron robo3 + chr2L 1287410 intron robo3 + chr2L_10_1285001 chr2L_1285001 RAL-42 24 chr2L 1322005 1322054 chr2L 1322114 1322163 10 106 4.5 1.0 2.8 2.6 158 chr2L 1322005 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322163 intergenic not near genes chr2L_10_1320001 chr2L_1320001 RAL-42 25 chr2L 1399083 1399104 chr2L 1399206 1399221 4 122 1.5 2.0 1.8 1.4 138 chr2L 1399083 intron lea - chr2L 1399152 intron lea - chr2L 1399221 intron lea - chr2L_4_1395001 chr2L_1395001 RAL-42 26 chr2L 1415082 1415126 chr2L 1415344 1415377 8 260 4.0 2.5 3.2 1.9 295 chr2L 1415082 intron lea - chr2L 1415230 intron lea - chr2L 1415377 intron lea - chr2L_8_1415001 chr2L_1415001 RAL-42 27 chr2L 1570674 1570713 chr2L 1573566 1573605 F-element 10 2892 4.5 2.5 3.5 2.2 2931 chr2L 1570674 intron haf + chr2L 1572140 intron haf + chr2L 1573605 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-42 28 chr2L 1678940 1678998 chr2L 1686443 1686483 blood 7 7495 0.5 6.0 3.2 1.7 7543 chr2L 1678940 intron chinmo + chr2L 1682712 intron chinmo + chr2L 1686483 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-42 29 chr2L 1711338 1711385 chr2L 1711682 1711719 mdg3 7 336 5.0 3.5 4.2 1.3 381 chr2L 1711338 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711719 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-42 30 chr2L 1721819 1721852 chr2L 1721915 1721951 7 99 0.0 3.0 1.5 2.8 132 chr2L 1721819 intron Rim2 - chr2L 1721885 intron Rim2 - chr2L 1721951 intron Rim2 - chr2L_7_1720001 chr2L_1720001 RAL-42 31 chr2L 1828382 1828421 chr2L 1828486 1828520 6 101 4.5 1.0 2.8 1.6 138 chr2L 1828382 intergenic not near genes chr2L 1828451 intergenic not near genes chr2L 1828520 intergenic not near genes chr2L_6_1825001 chr2L_1825001 RAL-42 32 chr2L 1883397 1883447 chr2L 1884001 1884044 8 595 0.5 3.0 1.8 2.9 647 chr2L 1883397 intron CG15358 - chr2L 1883720 intron CG15358 - chr2L 1884044 exon CG15358 - chr2L_8_1880001 chr2L_1880001 RAL-42 33 chr2L 1999571 1999576 chr2L 1999724 1999760 4 170 4.0 3.5 3.8 0.8 189 chr2L 1999571 intron CG33543 - chr2L 1999666 intron CG33543 - chr2L 1999760 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-42 34 chr2L 2001794 2001815 chr2L 2001892 2001913 7 98 1.5 9.0 5.2 1.1 119 chr2L 2001794 intron,5` UTR CG33543 -,CR43464 + chr2L 2001854 intron,5` UTR CG33543 -,CR43464 + chr2L 2001913 intron,5` UTR CG33543 -,CR43464 + chr2L_7_2000001 chr2L_2000001 RAL-42 35 chr2L 2047794 2047810 chr2L 2048009 2048025 4 215 1.5 0.0 0.8 2.2 231 chr2L 2047794 3` UTR Kebab + chr2L 2047910 3` UTR Kebab + chr2L 2048025 3` UTR Kebab + chr2L_4_2045001 chr2L_2045001 RAL-42 36 chr2L 2100376 2100408 chr2L 2109540 2109551 roo 8 9156 4.0 5.0 4.5 1.5 9175 chr2L 2100376 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-42 37 chr2L 2125521 2125566 chr2L 2125843 2125889 7 323 7.0 11.5 9.2 0.7 368 chr2L 2125521 intergenic not near genes chr2L 2125705 intergenic not near genes chr2L 2125889 intergenic not near genes chr2L_7_2125001 chr2L_2125001 RAL-42 38 chr2L 2372343 2372400 chr2L 2372449 2372500 5 105 0.0 4.0 2.0 1.7 157 chr2L 2372343 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372500 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-42 39 chr2L 2392136 2392179 chr2L 2392266 2392303 13 129 7.0 0.5 3.8 2.7 167 chr2L 2392136 intron VGlut + chr2L 2392220 intron VGlut + chr2L 2392303 intron VGlut + chr2L_13_2390001 chr2L_2390001 RAL-42 40 chr2L 2597016 2597060 chr2L 2597141 2597185 13 125 4.5 8.0 6.2 1.8 169 chr2L 2597016 intergenic not near genes chr2L 2597100 intergenic not near genes chr2L 2597185 intergenic not near genes chr2L_13_2595001 chr2L_2595001 RAL-42 41 chr2L 2612282 2612312 chr2L 2612390 2612420 6 107 0.0 7.0 3.5 1.3 138 chr2L 2612282 intergenic not near genes chr2L 2612351 intergenic not near genes chr2L 2612420 intergenic not near genes chr2L_6_2610001 chr2L_2610001 RAL-42 42 chr2L 2702606 2702635 chr2L 2702700 2702736 14 100 6.0 10.0 8.0 1.6 130 chr2L 2702606 intron CG31690 + chr2L 2702671 intron CG31690 + chr2L 2702736 intron CG31690 + chr2L_14_2700001 chr2L_2700001 RAL-42 43 chr2L 2719595 2719641 chr2L 2719849 2719895 12 254 4.5 5.5 5.0 2.0 300 chr2L 2719595 intergenic CG31690 + chr2L 2719745 intergenic CG31690 + chr2L 2719895 intergenic CG31690 + chr2L_12_2715001 chr2L_2715001 RAL-42 44 chr2L 2724386 2724423 chr2L 2724481 2724519 4 93 1.0 1.0 1.0 2.0 133 chr2L 2724386 intergenic not near genes chr2L 2724452 intergenic not near genes chr2L 2724519 intergenic not near genes chr2L_4_2720001 chr2L_2720001 RAL-42 45 chr2L 2826526 2826574 chr2L 2826634 2826679 5 108 0.0 3.5 1.8 1.8 153 chr2L 2826526 intron Duox - chr2L 2826602 intron Duox - chr2L 2826679 intron Duox - chr2L_5_2825001 chr2L_2825001 RAL-42 46 chr2L 2895670 2895717 chr2L 2895776 2895805 8 100 5.5 1.0 3.2 1.9 135 chr2L 2895670 intron lilli + chr2L 2895738 intron lilli + chr2L 2895805 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-42 47 chr2L 2937422 2937451 chr2L 2937522 2937551 8 100 7.0 3.5 5.2 1.3 129 chr2L 2937422 intron lilli + chr2L 2937486 intron lilli + chr2L 2937551 intron lilli + chr2L_8_2935001 chr2L_2935001 RAL-42 48 chr2L 3073010 3073051 chr2L 3078233 3078274 copia 8 5223 5.0 3.0 4.0 1.6 5264 chr2L 3073010 intron toc - chr2L 3075642 intron toc - chr2L 3078274 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-42 49 chr2L 3108872 3108889 chr2L 3108969 3108986 4 97 0.5 2.5 1.5 1.6 114 chr2L 3108872 intron toc - chr2L 3108929 intron toc - chr2L 3108986 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-42 50 chr2L 3147260 3147307 chr2L 3147356 3147394 9 95 1.5 4.5 3.0 2.2 134 chr2L 3147260 3` UTR Mad - chr2L 3147327 3` UTR Mad - chr2L 3147394 3` UTR Mad - chr2L_9_3145001 chr2L_3145001 RAL-42 51 chr2L 3202721 3202771 chr2L 3210170 3210220 mdg1 20 7449 5.0 9.0 7.0 2.5 7499 chr2L 3202721 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210220 intergenic CR45336 + chr2L_20_3205001 chr2L_3205001 RAL-42 52 chr2L 3251474 3251525 chr2L 3259059 3259110 springer 14 7581 5.0 4.5 4.8 2.4 7636 chr2L 3251474 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259110 intergenic not near genes chr2L_14_3255001 chr2L_3255001 RAL-42 53 chr2L 3323254 3323275 chr2L 3323379 3323392 6 122 6.0 5.5 5.8 0.9 138 chr2L 3323254 intergenic CG8837 + chr2L 3323323 intergenic CG8837 + chr2L 3323392 intergenic CG8837 + chr2L_6_3320001 chr2L_3320001 RAL-42 54 chr2L 3380735 3380744 chr2L 3380840 3380849 4 105 0.0 1.5 0.8 2.2 114 chr2L 3380735 intergenic not near genes chr2L 3380792 intergenic not near genes chr2L 3380849 intergenic not near genes chr2L_4_3380001 chr2L_3380001 RAL-42 55 chr2L 3388585 3388620 chr2L 3388846 3388881 pogo 4 261 1.0 2.0 1.5 1.6 296 chr2L 3388585 intergenic CG42460 - chr2L 3388733 intergenic CG42460 - chr2L 3388881 intergenic CG42460 -,CR44791 + chr2L_4_3385001 chr2L_3385001 RAL-42 56 chr2L 3393546 3393573 chr2L 3393677 3393704 5 131 3.0 3.5 3.2 1.2 158 chr2L 3393546 intergenic not near genes chr2L 3393625 intergenic not near genes chr2L 3393704 intergenic not near genes chr2L_5_3390001 chr2L_3390001 RAL-42 57 chr2L 3505573 3505617 chr2L 3505669 3505713 16 96 4.0 6.5 5.2 2.6 140 chr2L 3505573 intron tim - chr2L 3505643 intron tim - chr2L 3505713 intron tim - chr2L_16_3505001 chr2L_3505001 RAL-42 58 chr2L 3508352 3508373 chr2L 3508450 3508471 8 98 0.0 11.0 5.5 1.2 119 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508412 intergenic CR45299 +,tim - chr2L 3508471 intergenic CR45299 +,tim - chr2L_8_3505001 chr2L_3505001 RAL-42 59 chr2L 3604256 3604286 chr2L 3604404 3604439 8 152 6.5 4.5 5.5 1.2 183 chr2L 3604256 3` UTR odd - chr2L 3604348 3` UTR odd - chr2L 3604439 3` UTR odd - chr2L_8_3600001 chr2L_3600001 RAL-42 60 chr2L 3749292 3749334 chr2L 3749387 3749408 10 94 3.0 4.0 3.5 2.2 116 chr2L 3749292 exon CG10019 + chr2L 3749350 intron CG10019 + chr2L 3749408 intron CG10019 + chr2L_10_3745001 chr2L_3745001 RAL-42 61 chr2L 3831818 3831862 chr2L 3831919 3831963 15 101 4.5 4.0 4.2 2.9 145 chr2L 3831818 intergenic not near genes chr2L 3831890 intergenic not near genes chr2L 3831963 intergenic not near genes chr2L_15_3830001 chr2L_3830001 RAL-42 62 chr2L 3936611 3936652 chr2L 3936708 3936735 7 96 1.0 0.5 0.8 3.9 124 chr2L 3936611 intron fred - chr2L 3936673 intron fred - chr2L 3936735 intron fred - chr2L_7_3935001 chr2L_3935001 RAL-42 63 chr2L 3943775 3943820 chr2L 3943886 3943931 7 111 2.5 5.5 4.0 1.4 156 chr2L 3943775 intron fred - chr2L 3943853 intron fred - chr2L 3943931 intron fred - chr2L_7_3940001 chr2L_3940001 RAL-42 64 chr2L 3959159 3959195 chr2L 3959255 3959291 6 96 1.0 1.5 1.2 2.7 132 chr2L 3959159 intron fred - chr2L 3959225 intron fred - chr2L 3959291 intron fred - chr2L_6_3955001 chr2L_3955001 RAL-42 65 chr2L 4159402 4159437 chr2L 4159622 4159657 9 220 4.0 9.0 6.5 1.2 255 chr2L 4159402 intergenic not near genes chr2L 4159530 intergenic not near genes chr2L 4159657 intergenic not near genes chr2L_9_4155001 chr2L_4155001 RAL-42 66 chr2L 4166361 4166401 chr2L 4166462 4166504 7 103 3.5 2.5 3.0 1.8 143 chr2L 4166361 intergenic Or24a - chr2L 4166432 intergenic Or24a - chr2L 4166504 intergenic Or24a - chr2L_7_4165001 chr2L_4165001 RAL-42 67 chr2L 4184525 4184571 chr2L 4184635 4184681 13 110 2.5 6.0 4.2 2.5 156 chr2L 4184525 intergenic not near genes chr2L 4184603 intergenic not near genes chr2L 4184681 intergenic not near genes chr2L_13_4180001 chr2L_4180001 RAL-42 68 chr2L 4224410 4224421 chr2L 4224479 4224520 7 95 3.0 4.0 3.5 1.6 110 chr2L 4224410 intergenic CG3702 - chr2L 4224465 intergenic CG3702 - chr2L 4224520 intergenic CG3702 - chr2L_7_4220001 chr2L_4220001 RAL-42 69 chr2L 4351461 4351502 chr2L 4351551 4351597 13 93 6.5 6.0 6.2 1.8 136 chr2L 4351461 intergenic CR44700 + chr2L 4351529 intergenic CR44700 + chr2L 4351597 intergenic CR44700 + chr2L_13_4350001 chr2L_4350001 RAL-42 70 chr2L 4586955 4586986 chr2L 4587067 4587098 6 112 0.5 5.0 2.8 1.6 143 chr2L 4586955 intron dp - chr2L 4587026 intron dp - chr2L 4587098 intron dp - chr2L_6_4585001 chr2L_4585001 RAL-42 71 chr2L 4601709 4601735 chr2L 4609170 4609196 mdg1 6 7460 2.5 3.0 2.8 1.6 7487 chr2L 4601709 intron dp - chr2L 4605452 intron dp - chr2L 4609196 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-42 72 chr2L 4661827 4661858 chr2L 4669427 4669458 opus 8 7599 4.5 10.5 7.5 0.9 7631 chr2L 4661827 intergenic not near genes chr2L 4665642 intergenic not near genes chr2L 4669458 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-42 73 chr2L 4789901 4789944 chr2L 4790005 4790042 5 102 2.0 2.0 2.0 1.7 141 chr2L 4789901 intron CG15630 - chr2L 4789972 intron CG15630 - chr2L 4790042 intron CG15630 - chr2L_5_4785001 chr2L_4785001 RAL-42 74 chr2L 4819498 4819519 chr2L 4819641 4819662 10 143 3.5 5.5 4.5 1.8 164 chr2L 4819498 intergenic not near genes chr2L 4819580 intergenic not near genes chr2L 4819662 intergenic not near genes chr2L_10_4815001 chr2L_4815001 RAL-42 75 chr2L 4917325 4917345 chr2L 4917408 4917441 4 98 1.5 1.0 1.2 1.8 116 chr2L 4917325 intron hoe1 - chr2L 4917383 intron hoe1 - chr2L 4917441 intron hoe1 - chr2L_4_4915001 chr2L_4915001 RAL-42 76 chr2L 4918159 4918186 chr2L 4923252 4923279 jockey 7 5093 6.5 7.0 6.8 0.9 5120 chr2L 4918159 intron hoe1 - chr2L 4920719 intron hoe1 - chr2L 4923279 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-42 77 chr2L 4925659 4925691 chr2L 4925758 4925787 6 98 4.5 2.5 3.5 1.3 128 chr2L 4925659 intron hoe1 - chr2L 4925723 intron hoe1 - chr2L 4925787 intron hoe1 - chr2L_6_4925001 chr2L_4925001 RAL-42 78 chr2L 4953500 4953534 chr2L 4953761 4953795 pogo 15 258 2.0 10.0 6.0 2.1 295 chr2L 4953500 intergenic Jon25Bii - chr2L 4953648 intergenic not near genes chr2L 4953795 intergenic Jon25Bi - chr2L_15_4950001 chr2L_4950001 RAL-42 79 chr2L 5025114 5025160 chr2L 5025210 5025256 9 96 5.5 0.5 3.0 2.2 142 chr2L 5025114 intron vkg - chr2L 5025185 intron vkg - chr2L 5025256 intron vkg - chr2L_9_5025001 chr2L_5025001 RAL-42 80 chr2L 5040666 5040716 chr2L 5040782 5040832 22 116 6.5 6.0 6.2 3.1 166 chr2L 5040666 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040749 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040832 3` UTR CG31650 - chr2L_22_5040001 chr2L_5040001 RAL-42 81 chr2L 5224212 5224260 chr2L 5224361 5224408 18 147 5.5 3.5 4.5 3.3 196 chr2L 5224212 intron tkv - chr2L 5224310 intron tkv - chr2L 5224408 intron tkv - chr2L_18_5220001 chr2L_5220001 RAL-42 82 chr2L 5242936 5242937 chr2L 16217660 16217660 5 10974724 13.5 13.0 13.2 0.4 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_5_10730001 chr2L_10730001 RAL-42 83 chr2L 5475141 5475164 chr2L 5475266 5475289 4 125 1.5 2.0 1.8 1.4 148 chr2L 5475141 intergenic not near genes chr2L 5475215 intergenic not near genes chr2L 5475289 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-42 84 chr2L 5488920 5488955 chr2L 5489023 5489058 4 102 3.5 1.5 2.5 1.1 138 chr2L 5488920 intergenic not near genes chr2L 5488989 intergenic not near genes chr2L 5489058 intergenic not near genes chr2L_4_5485001 chr2L_5485001 RAL-42 85 chr2L 5500040 5500070 chr2L 5500146 5500176 9 106 8.0 3.5 5.8 1.3 136 chr2L 5500040 intergenic not near genes chr2L 5500108 intergenic not near genes chr2L 5500176 intergenic not near genes chr2L_9_5500001 chr2L_5500001 RAL-42 86 chr2L 5549454 5549480 chr2L 5549558 5549584 8 102 0.5 0.0 0.2 6.7 130 chr2L 5549454 3` UTR Oscillin + chr2L 5549519 3` UTR Oscillin + chr2L 5549584 3` UTR Oscillin + chr2L_8_5545001 chr2L_5545001 RAL-42 87 chr2L 5634168 5634188 chr2L 5634265 5634299 5 108 5.5 2.0 3.8 1.0 131 chr2L 5634168 intron CG31646 - chr2L 5634234 intron CG31646 - chr2L 5634299 intron CG31646 - chr2L_5_5630001 chr2L_5630001 RAL-42 88 chr2L 5720243 5720288 chr2L 5720350 5720395 21 103 6.0 8.5 7.2 2.6 152 chr2L 5720243 intron CG11149 - chr2L 5720319 intron CG11149 - chr2L 5720395 intron CG11149 - chr2L_21_5720001 chr2L_5720001 RAL-42 89 chr2L 5796881 5796932 chr2L 5796977 5797029 13 96 8.5 7.5 8.0 1.4 148 chr2L 5796881 intron CG9171 - chr2L 5796955 intron CG9171 - chr2L 5797029 intron CG9171 - chr2L_13_5795001 chr2L_5795001 RAL-42 90 chr2L 5819660 5819708 chr2L 5819764 5819792 11 102 4.0 2.5 3.2 2.6 132 chr2L 5819660 intergenic not near genes chr2L 5819726 intergenic not near genes chr2L 5819792 intergenic not near genes chr2L_11_5815001 chr2L_5815001 RAL-42 91 chr2L 5820381 5820425 chr2L 5820556 5820601 8 166 2.5 3.5 3.0 2.0 220 chr2L 5820381 intergenic not near genes chr2L 5820491 intergenic not near genes chr2L 5820601 intergenic not near genes chr2L_8_5820001 chr2L_5820001 RAL-42 92 chr2L 5904444 5904474 chr2L 5904544 5904574 12 100 2.5 0.0 1.2 5.5 130 chr2L 5904444 exon CG9021 - chr2L 5904509 intron CG9021 - chr2L 5904574 intron CG9021 - chr2L_12_5900001 chr2L_5900001 RAL-42 93 chr2L 5931299 5931332 chr2L 5931431 5931464 5 132 4.0 2.5 3.2 1.2 165 chr2L 5931299 intron dsf + chr2L 5931382 intron dsf + chr2L 5931464 intron dsf + chr2L_5_5930001 chr2L_5930001 RAL-42 94 chr2L 5944551 5944587 chr2L 5948973 5949009 15 4422 23.0 35.5 29.2 0.5 4458 chr2L 5944551 intron Gpdh + chr2L 5946780 intron Gpdh + chr2L 5949009 intergenic Gpdh +,CG9044 + chr2L_15_5945001 chr2L_5945001 RAL-42 95 chr2L 5962248 5962305 chr2L 5962344 5962401 14 96 5.0 4.0 4.5 2.5 153 chr2L 5962248 intergenic not near genes chr2L 5962324 intergenic not near genes chr2L 5962401 intergenic not near genes chr2L_14_5960001 chr2L_5960001 RAL-42 96 chr2L 5989033 5989055 chr2L 5989114 5989151 7 92 4.5 0.0 2.2 2.2 118 chr2L 5989033 intergenic ifc +,lid - chr2L 5989092 intergenic ifc +,lid - chr2L 5989151 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 RAL-42 97 chr2L 5993309 5993358 chr2L 5993420 5993469 15 110 4.5 4.0 4.2 2.9 160 chr2L 5993309 exon lid - chr2L 5993389 intron lid - chr2L 5993469 intron lid - chr2L_15_5990001 chr2L_5990001 RAL-42 98 chr2L 6028860 6028892 chr2L 6028967 6028999 7 104 4.0 3.5 3.8 1.5 139 chr2L 6028860 intron CG9109 - chr2L 6028930 intron CG9109 - chr2L 6028999 intron CG9109 - chr2L_7_6025001 chr2L_6025001 RAL-42 99 chr2L 6050421 6050466 chr2L 6050545 6050590 14 123 8.0 1.0 4.5 2.5 169 chr2L 6050421 3` UTR CG12393 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050590 intergenic CG12393 +,CG9135 + chr2L_14_6050001 chr2L_6050001 RAL-42 100 chr2L 6242957 6242984 chr2L 6243075 6243102 8 118 5.5 4.0 4.8 1.4 145 chr2L 6242957 intergenic not near genes chr2L 6243030 intergenic not near genes chr2L 6243102 intergenic not near genes chr2L_8_6240001 chr2L_6240001 RAL-42 101 chr2L 6349058 6349074 chr2L 6349156 6349172 6 98 3.0 4.0 3.5 1.3 114 chr2L 6349058 intergenic CG9498 - chr2L 6349115 intergenic CG9498 - chr2L 6349172 intergenic CG9498 - chr2L_6_6345001 chr2L_6345001 RAL-42 102 chr2L 6363133 6363182 chr2L 6366079 6366112 Burdock 11 2940 9.0 4.5 6.8 1.4 2979 chr2L 6363133 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366112 intergenic not near genes chr2L_11_6360001 chr2L_6360001 RAL-42 103 chr2L 6426835 6426875 chr2L 6445115 6445155 roo 6 18280 6.5 3.0 4.8 1.0 18320 chr2L 6426835 3` UTR CG9527 - chr2L 6435995 intron CG9527 - chr2L 6445155 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-42 104 chr2L 6458563 6458608 chr2L 6458664 6458709 22 100 3.0 5.0 4.0 4.4 146 chr2L 6458563 exon frj + chr2L 6458636 3` UTR frj + chr2L 6458709 3` UTR frj + chr2L_22_6455001 chr2L_6455001 RAL-42 105 chr2L 6566798 6566812 chr2L 6566908 6566917 4 108 4.5 4.0 4.2 0.8 119 chr2L 6566798 intergenic not near genes chr2L 6566858 intergenic not near genes chr2L 6566917 intergenic not near genes chr2L_4_6565001 chr2L_6565001 RAL-42 106 chr2L 6640914 6640939 chr2L 6641029 6641054 5 111 3.0 5.5 4.2 1.0 140 chr2L 6640914 exon CG31635 - chr2L 6640984 intron CG31635 - chr2L 6641054 intron CG31635 - chr2L_5_6640001 chr2L_6640001 RAL-42 107 chr2L 6689921 6689956 chr2L 6690020 6690055 7 99 6.0 2.5 4.2 1.3 134 chr2L 6689921 intron Tsp - chr2L 6689988 intron Tsp - chr2L 6690055 intron Tsp - chr2L_7_6685001 chr2L_6685001 RAL-42 108 chr2L 6818109 6818141 chr2L 6818218 6818248 4 104 0.0 2.5 1.2 1.8 139 chr2L 6818109 intergenic not near genes chr2L 6818178 intergenic not near genes chr2L 6818248 intergenic not near genes chr2L_4_6815001 chr2L_6815001 RAL-42 109 chr2L 6836488 6836525 chr2L 6836585 6836627 9 101 7.5 2.0 4.8 1.6 139 chr2L 6836488 intron sens-2 + chr2L 6836558 intron sens-2 + chr2L 6836627 intron sens-2 + chr2L_9_6835001 chr2L_6835001 RAL-42 110 chr2L 6850358 6850401 chr2L 6850461 6850504 12 103 9.0 1.0 5.0 2.0 146 chr2L 6850358 intergenic not near genes chr2L 6850431 intergenic not near genes chr2L 6850504 intergenic not near genes chr2L_12_6850001 chr2L_6850001 RAL-42 111 chr2L 6851507 6851537 chr2L 6851603 6851633 6 96 2.0 4.0 3.0 1.5 126 chr2L 6851507 intergenic not near genes chr2L 6851570 intergenic not near genes chr2L 6851633 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-42 112 chr2L 6864973 6864994 chr2L 6865310 6865331 11 337 8.5 6.5 7.5 1.3 358 chr2L 6864973 intron Nha1 - chr2L 6865152 intron Nha1 - chr2L 6865331 intron Nha1 - chr2L_11_6865001 chr2L_6865001 RAL-42 113 chr2L 6876775 6876809 chr2L 6882967 6882997 diver 5 6188 5.0 4.0 4.5 0.9 6222 chr2L 6876775 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882997 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-42 114 chr2L 6968461 6968510 chr2L 6968643 6968692 16 182 5.0 5.0 5.0 2.7 231 chr2L 6968461 intergenic snRNP-U1-70K - chr2L 6968576 intergenic snRNP-U1-70K - chr2L 6968692 intergenic snRNP-U1-70K - chr2L_16_6965001 chr2L_6965001 RAL-42 115 chr2L 7111734 7111769 chr2L 7111839 7111874 8 103 0.5 0.0 0.2 6.7 140 chr2L 7111734 intron Pvf3 - chr2L 7111804 intron Pvf3 - chr2L 7111874 intron Pvf3 - chr2L_8_7110001 chr2L_7110001 RAL-42 116 chr2L 7125771 7125795 chr2L 7125907 7125930 4 136 3.0 2.0 2.5 1.1 159 chr2L 7125771 intron Pvf3 - chr2L 7125850 intron Pvf3 - chr2L 7125930 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-42 117 chr2L 7126861 7126875 chr2L 7126960 7126974 4 99 2.0 0.0 1.0 2.0 113 chr2L 7126861 intron Pvf3 - chr2L 7126918 intron Pvf3 - chr2L 7126974 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-42 118 chr2L 7197979 7198020 chr2L 7198078 7198119 7 98 1.5 3.0 2.2 2.2 140 chr2L 7197979 intron CG4502 - chr2L 7198049 intron CG4502 - chr2L 7198119 intron CG4502 - chr2L_7_7195001 chr2L_7195001 RAL-42 119 chr2L 7301287 7301317 chr2L 7301390 7301420 6 103 9.0 2.5 5.8 0.9 133 chr2L 7301287 intergenic not near genes chr2L 7301354 intergenic not near genes chr2L 7301420 intergenic not near genes chr2L_6_7300001 chr2L_7300001 RAL-42 120 chr2L 7301321 7301330 chr2L 7301382 7301433 8 97 6.5 2.5 4.5 1.5 112 chr2L 7301321 intergenic not near genes chr2L 7301377 intergenic not near genes chr2L 7301433 intergenic not near genes chr2L_8_7300001 chr2L_7300001 RAL-42 121 chr2L 7335262 7335275 chr2L 7335368 7335381 5 106 2.5 4.5 3.5 1.1 119 chr2L 7335262 intron Wnt6 + chr2L 7335322 intron Wnt6 + chr2L 7335381 intron Wnt6 + chr2L_5_7335001 chr2L_7335001 RAL-42 122 chr2L 7343314 7343356 chr2L 7350450 7350492 roo 8 7135 2.5 3.5 3.0 2.0 7178 chr2L 7343314 intron Wnt6 + chr2L 7346903 intron Wnt6 + chr2L 7350492 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-42 123 chr2L 7399290 7399323 chr2L 7399683 7399716 10 391 0.5 4.5 2.5 2.9 426 chr2L 7399290 intergenic not near genes chr2L 7399503 intergenic not near genes chr2L 7399716 intergenic not near genes chr2L_10_7395001 chr2L_7395001 RAL-42 124 chr2L 7447772 7447812 chr2L 7447887 7447927 5 115 3.0 2.0 2.5 1.4 155 chr2L 7447772 5` UTR santa-maria - chr2L 7447850 5` UTR santa-maria - chr2L 7447927 5` UTR santa-maria - chr2L_5_7445001 chr2L_7445001 RAL-42 125 chr2L 7489684 7489714 chr2L 7489793 7489823 5 109 2.5 2.0 2.2 1.6 139 chr2L 7489684 intron Ziz - chr2L 7489754 intron Ziz - chr2L 7489823 intron Ziz - chr2L_5_7485001 chr2L_7485001 RAL-42 126 chr2L 7513319 7513348 chr2L 7513417 7513446 5 96 1.5 0.5 1.0 2.5 127 chr2L 7513319 intron RapGAP1 - chr2L 7513382 intron RapGAP1 - chr2L 7513446 intron RapGAP1 - chr2L_5_7510001 chr2L_7510001 RAL-42 127 chr2L 7555212 7555234 chr2L 7555296 7555331 4 94 0.5 4.5 2.5 1.1 119 chr2L 7555212 intron RapGAP1 - chr2L 7555272 intron RapGAP1 - chr2L 7555331 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-42 128 chr2L 7562169 7562186 chr2L 7562269 7562286 4 100 2.0 3.5 2.8 1.1 117 chr2L 7562169 intron RapGAP1 - chr2L 7562228 intron RapGAP1 - chr2L 7562286 intron RapGAP1 - chr2L_4_7560001 chr2L_7560001 RAL-42 129 chr2L 7609513 7609745 chr2L 7609628 7609842 5 104 3.5 1.0 2.2 1.6 329 chr2L 7609513 intron CG6739 + chr2L 7609678 intron CG6739 + chr2L 7609842 intron CG6739 + chr2L_5_7605001 chr2L_7605001 RAL-42 130 chr2L 7867550 7867595 chr2L 7867664 7867709 7 114 5.0 3.5 4.2 1.3 159 chr2L 7867550 intron Proc - chr2L 7867630 intron Proc - chr2L 7867709 intron Proc - chr2L_7_7865001 chr2L_7865001 RAL-42 131 chr2L 7922722 7922775 chr2L 7922823 7922876 10 100 5.0 5.0 5.0 1.7 154 chr2L 7922722 intron Snoo - chr2L 7922799 intron Snoo - chr2L 7922876 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-42 132 chr2L 7959020 7959057 chr2L 7960451 7960468 pogo 4 1425 2.5 3.5 3.0 1.0 1448 chr2L 7959020 intron Snoo - chr2L 7959744 intron Snoo - chr2L 7960468 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-42 133 chr2L 7977082 7977110 chr2L 7984078 7984103 297 11 6994 1.0 1.5 1.2 5.0 7021 chr2L 7977082 intron Snoo - chr2L 7980592 intron Snoo - chr2L 7984103 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 RAL-42 134 chr2L 7986910 7986914 chr2L 7987016 7987020 4 106 5.5 16.0 10.8 0.3 110 chr2L 7986910 3` UTR pes - chr2L 7986965 3` UTR pes - chr2L 7987020 3` UTR pes - chr2L_4_7985001 chr2L_7985001 RAL-42 135 chr2L 8003037 8003064 chr2L 8003139 8003166 6 101 2.5 10.0 6.2 0.8 129 chr2L 8003037 intron Wwox - chr2L 8003102 intron Wwox - chr2L 8003166 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-42 136 chr2L 8044076 8044124 chr2L 8044175 8044223 12 99 4.5 3.0 3.8 2.5 147 chr2L 8044076 intron CG7466 + chr2L 8044150 intron CG7466 + chr2L 8044223 intron CG7466 + chr2L_12_8040001 chr2L_8040001 RAL-42 137 chr2L 8128010 8128059 chr2L 8128114 8128143 7 101 3.5 3.5 3.5 1.6 133 chr2L 8128010 intron CG8668 + chr2L 8128076 intron CG8668 + chr2L 8128143 intron CG8668 + chr2L_7_8125001 chr2L_8125001 RAL-42 138 chr2L 8167126 8167162 chr2L 8167236 8167273 7 111 3.5 1.5 2.5 2.0 147 chr2L 8167126 intron Piezo + chr2L 8167200 intron Piezo + chr2L 8167273 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-42 139 chr2L 8230302 8230341 chr2L 8230406 8230441 5 102 1.5 5.5 3.5 1.1 139 chr2L 8230302 5` UTR Pvr - chr2L 8230372 intron Pvr - chr2L 8230441 intron Pvr - chr2L_5_8230001 chr2L_8230001 RAL-42 140 chr2L 8334433 8334486 chr2L 8334532 8334585 9 99 1.0 5.0 3.0 2.2 152 chr2L 8334433 intergenic not near genes chr2L 8334509 intergenic not near genes chr2L 8334585 intergenic not near genes chr2L_9_8330001 chr2L_8330001 RAL-42 141 chr2L 8336929 8336965 chr2L 8337028 8337064 5 98 0.0 3.0 1.5 2.0 135 chr2L 8336929 intergenic not near genes chr2L 8336996 intergenic not near genes chr2L 8337064 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-42 142 chr2L 8349587 8349630 chr2L 8349712 8349752 6 124 2.5 1.5 2.0 2.0 165 chr2L 8349587 exon CG7778 + chr2L 8349670 intron CG7778 + chr2L 8349752 exon CG7778 + chr2L_6_8345001 chr2L_8345001 RAL-42 143 chr2L 8498187 8498239 chr2L 8498288 8498340 15 100 2.5 2.0 2.2 4.7 153 chr2L 8498187 intron Dh31 - chr2L 8498264 intron Dh31 - chr2L 8498340 intron Dh31 - chr2L_15_8495001 chr2L_8495001 RAL-42 144 chr2L 8510118 8510170 chr2L 8510224 8510279 15 106 0.5 4.0 2.2 4.7 161 chr2L 8510118 exon CG13096 - chr2L 8510198 intron CG13096 - chr2L 8510279 intron CG13096 - chr2L_15_8510001 chr2L_8510001 RAL-42 145 chr2L 8538144 8538194 chr2L 8538240 8538300 6 93 5.5 0.5 3.0 1.5 156 chr2L 8538144 intron CG17834 + chr2L 8538222 intron CG17834 + chr2L 8538300 intron CG17834 + chr2L_6_8535001 chr2L_8535001 RAL-42 146 chr2L 8551414 8551428 chr2L 8551649 8551663 4 235 2.0 1.5 1.8 1.4 249 chr2L 8551414 intron Sema-1a + chr2L 8551538 intron Sema-1a + chr2L 8551663 intron Sema-1a + chr2L_4_8550001 chr2L_8550001 RAL-42 147 chr2L 8605945 8605988 chr2L 8606040 8606080 11 95 4.0 0.0 2.0 3.7 135 chr2L 8605945 intron Sema-1a + chr2L 8606012 intron Sema-1a + chr2L 8606080 intron Sema-1a + chr2L_11_8605001 chr2L_8605001 RAL-42 148 chr2L 8612839 8612869 chr2L 8612936 8612966 10 97 6.0 6.0 6.0 1.4 127 chr2L 8612839 intron Sema-1a + chr2L 8612902 intron Sema-1a + chr2L 8612966 intron Sema-1a + chr2L_10_8610001 chr2L_8610001 RAL-42 149 chr2L 8687070 8687094 chr2L 8687194 8687218 4 124 3.0 9.5 6.2 0.6 148 chr2L 8687070 intergenic Trs23 +,Hnf4 - chr2L 8687144 intergenic Hnf4 -,Trs23 + chr2L 8687218 intergenic Hnf4 -,Trs23 + chr2L_4_8685001 chr2L_8685001 RAL-42 150 chr2L 8701519 8701566 chr2L 8701616 8701663 10 96 2.5 4.0 3.2 2.4 144 chr2L 8701519 intron Hnf4 - chr2L 8701591 intron Hnf4 - chr2L 8701663 intron Hnf4 - chr2L_10_8700001 chr2L_8700001 RAL-42 151 chr2L 8723109 8723144 chr2L 8731506 8731541 Tirant 5 8397 2.5 1.0 1.8 1.8 8432 chr2L 8723109 intron raw - chr2L 8727325 intron raw - chr2L 8731541 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-42 152 chr2L 8736723 8736767 chr2L 8736913 8736957 12 187 4.5 3.5 4.0 2.4 234 chr2L 8736723 intron raw - chr2L 8736840 intron raw - chr2L 8736957 intron raw - chr2L_12_8735001 chr2L_8735001 RAL-42 153 chr2L 8772770 8772817 chr2L 8772875 8772924 7 106 4.5 0.0 2.2 2.2 154 chr2L 8772770 intergenic CG9466 -,CG9465 - chr2L 8772847 intergenic CG9466 - chr2L 8772924 intergenic CG9466 - chr2L_7_8770001 chr2L_8770001 RAL-42 154 chr2L 8799782 8799830 chr2L 8799918 8799965 7 133 1.5 2.5 2.0 2.3 183 chr2L 8799782 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799965 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-42 155 chr2L 8946703 8946738 chr2L 8946820 8946851 9 126 0.5 1.5 1.0 4.5 148 chr2L 8946703 intron C1GalTA - chr2L 8946777 intron C1GalTA - chr2L 8946851 intron C1GalTA - chr2L_9_8945001 chr2L_8945001 RAL-42 156 chr2L 9000269 9000280 chr2L 9007799 9007810 roo 4 7530 6.0 5.0 5.5 0.6 7541 chr2L 9000269 intergenic Try29F + chr2L 9004040 intergenic not near genes chr2L 9007810 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-42 157 chr2L 9000304 9000308 chr2L 9007833 9007838 roo 4 7530 3.5 10.0 6.8 0.5 7534 chr2L 9000304 intergenic Try29F + chr2L 9004071 intergenic not near genes chr2L 9007838 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-42 158 chr2L 9027783 9027795 chr2L 9028070 9028088 4 297 1.5 5.0 3.2 1.0 305 chr2L 9027783 intron,intron CG9582 -,CR44352 - chr2L 9027936 intron,intron CG9582 -,CR44352 - chr2L 9028088 intron,intron CG9582 -,CR44352 - chr2L_4_9025001 chr2L_9025001 RAL-42 159 chr2L 9095556 9095607 chr2L 9095663 9095667 9 100 3.0 1.5 2.2 2.8 111 chr2L 9095556 intergenic not near genes chr2L 9095612 intergenic not near genes chr2L 9095667 intergenic not near genes chr2L_9_9095001 chr2L_9095001 RAL-42 160 chr2L 9158775 9158785 chr2L 9158892 9158902 4 117 5.0 0.0 2.5 1.1 127 chr2L 9158775 intron CG32982 + chr2L 9158838 intron CG32982 + chr2L 9158902 intron CG32982 + chr2L_4_9155001 chr2L_9155001 RAL-42 161 chr2L 9217961 9217991 chr2L 9222768 9222792 Doc 8 4806 4.0 6.5 5.2 1.3 4831 chr2L 9217961 intron tai + chr2L 9220376 intron tai + chr2L 9222792 intron tai + chr2L_8_9220001 chr2L_9220001 RAL-42 162 chr2L 9227209 9227250 chr2L 9227312 9227351 8 103 4.0 3.5 3.8 1.7 142 chr2L 9227209 intron tai + chr2L 9227280 intron tai + chr2L 9227351 intron tai + chr2L_8_9225001 chr2L_9225001 RAL-42 163 chr2L 9253946 9253993 chr2L 9254043 9254090 6 97 4.5 4.5 4.5 1.1 144 chr2L 9253946 intergenic lectin-30A - chr2L 9254018 intergenic lectin-30A - chr2L 9254090 3` UTR lectin-30A - chr2L_6_9250001 chr2L_9250001 RAL-42 164 chr2L 9297362 9297398 chr2L 9297459 9297495 4 97 1.5 2.0 1.8 1.4 133 chr2L 9297362 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297495 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-42 165 chr2L 9375837 9375867 chr2L 9377246 9377294 11 1425 2.5 4.0 3.2 2.6 1457 chr2L 9375837 intron Shawl - chr2L 9376566 intron Shawl - chr2L 9377294 intron Shawl - chr2L_11_9375001 chr2L_9375001 RAL-42 166 chr2L 9385098 9385148 chr2L 9385208 9385258 5 110 3.0 2.5 2.8 1.3 160 chr2L 9385098 intron Shawl - chr2L 9385178 intron Shawl - chr2L 9385258 intron Shawl - chr2L_5_9385001 chr2L_9385001 RAL-42 167 chr2L 9387231 9387278 chr2L 9387348 9387396 15 117 2.0 2.0 2.0 5.0 165 chr2L 9387231 intron Shawl - chr2L 9387314 intron Shawl - chr2L 9387396 intron,5` UTR Shawl -,Aldh + chr2L_15_9385001 chr2L_9385001 RAL-42 168 chr2L 9391518 9391563 chr2L 9391705 9391740 16 184 4.5 2.5 3.5 3.6 222 chr2L 9391518 intron,3` UTR Shawl -,Aldh + chr2L 9391629 intron Shawl - chr2L 9391740 intron Shawl - chr2L_16_9390001 chr2L_9390001 RAL-42 169 chr2L 9393479 9393528 chr2L 9396466 9396515 jockey 10 2987 1.5 3.0 2.2 3.1 3036 chr2L 9393479 intron Shawl - chr2L 9394997 intron Shawl - chr2L 9396515 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-42 170 chr2L 9460737 9460782 chr2L 9460843 9460897 6 112 4.0 0.0 2.0 2.0 160 chr2L 9460737 exon numb + chr2L 9460817 intron numb + chr2L 9460897 intron numb + chr2L_6_9460001 chr2L_9460001 RAL-42 171 chr2L 9463749 9463763 chr2L 9463854 9463868 4 105 2.5 5.5 4.0 0.8 119 chr2L 9463749 intergenic not near genes chr2L 9463808 intergenic not near genes chr2L 9463868 intergenic not near genes chr2L_4_9460001 chr2L_9460001 RAL-42 172 chr2L 9470085 9470121 chr2L 9470184 9470220 13 99 4.5 5.0 4.8 2.2 135 chr2L 9470085 intergenic CR43769 + chr2L 9470152 intergenic CR43769 + chr2L 9470220 intergenic CR43769 + chr2L_13_9470001 chr2L_9470001 RAL-42 173 chr2L 9474762 9474803 chr2L 9474876 9474917 8 114 2.0 5.0 3.5 1.8 155 chr2L 9474762 intergenic not near genes chr2L 9474840 intergenic not near genes chr2L 9474917 intergenic not near genes chr2L_8_9470001 chr2L_9470001 RAL-42 174 chr2L 9506342 9506367 chr2L 9506444 9506469 7 102 2.0 2.5 2.2 2.2 127 chr2L 9506342 intron CG33298 + chr2L 9506406 intron CG33298 + chr2L 9506469 intron CG33298 + chr2L_7_9505001 chr2L_9505001 RAL-42 175 chr2L 9533860 9533871 chr2L 9533968 9533979 4 108 8.0 2.5 5.2 0.6 119 chr2L 9533860 intron Oatp30B + chr2L 9533920 intron Oatp30B + chr2L 9533979 intron Oatp30B + chr2L_4_9530001 chr2L_9530001 RAL-42 176 chr2L 9719757 9719777 chr2L 9719859 9719879 4 102 0.0 0.5 0.2 3.3 122 chr2L 9719757 intron Nckx30C - chr2L 9719818 intron Nckx30C - chr2L 9719879 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-42 177 chr2L 9830799 9830854 chr2L 9831034 9831071 9 221 0.5 1.0 0.8 5.0 272 chr2L 9830799 intron nAChRalpha6 - chr2L 9830935 intron nAChRalpha6 - chr2L 9831071 intron nAChRalpha6 - chr2L_9_9830001 chr2L_9830001 RAL-42 178 chr2L 9837438 9837446 chr2L 9837536 9837544 5 98 2.0 3.5 2.8 1.3 106 chr2L 9837438 intron nAChRalpha6 - chr2L 9837491 intron nAChRalpha6 - chr2L 9837544 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-42 179 chr2L 9849036 9849078 chr2L 9849391 9849422 7 353 5.0 0.5 2.8 1.8 386 chr2L 9849036 intron nAChRalpha6 - chr2L 9849229 intron nAChRalpha6 - chr2L 9849422 intron nAChRalpha6 - chr2L_7_9845001 chr2L_9845001 RAL-42 180 chr2L 9973709 9973732 chr2L 9980847 9980861 HMS-Beagle 4 7135 3.5 1.5 2.5 1.1 7152 chr2L 9973709 intergenic not near genes chr2L 9977285 intergenic not near genes chr2L 9980861 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-42 181 chr2L 9986352 9986382 chr2L 9986448 9986497 8 109 4.0 5.5 4.8 1.4 145 chr2L 9986352 intron bib + chr2L 9986424 intron bib + chr2L 9986497 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-42 182 chr2L 10002811 10002864 chr2L 10002953 10003006 12 140 4.5 5.0 4.8 2.1 195 chr2L 10002811 intergenic CG31875 -,SoYb - chr2L 10002908 intergenic CG31875 -,SoYb - chr2L 10003006 intergenic CG31875 -,SoYb - chr2L_12_10000001 chr2L_10000001 RAL-42 183 chr2L 10005083 10005133 chr2L 10005196 10005246 30 113 7.0 9.5 8.2 3.3 163 chr2L 10005083 intron CG4747 + chr2L 10005164 intron CG4747 + chr2L 10005246 intron CG4747 + chr2L_30_10005001 chr2L_10005001 RAL-42 184 chr2L 10050583 10050625 chr2L 10050685 10050727 9 102 1.5 4.0 2.8 2.4 144 chr2L 10050583 exon CG33301 + chr2L 10050655 intron CG33301 + chr2L 10050727 exon CG33301 + chr2L_9_10050001 chr2L_10050001 RAL-42 185 chr2L 10083030 10083082 chr2L 10083142 10083194 11 112 2.5 3.0 2.8 2.9 164 chr2L 10083030 intron CG44153 - chr2L 10083112 intron CG44153 - chr2L 10083194 intron CG44153 - chr2L_11_10080001 chr2L_10080001 RAL-42 186 chr2L 10095610 10095660 chr2L 10095710 10095760 16 100 3.0 1.5 2.2 5.0 150 chr2L 10095610 intron CG44153 - chr2L 10095685 intron CG44153 - chr2L 10095760 intron CG44153 - chr2L_16_10095001 chr2L_10095001 RAL-42 187 chr2L 10105270 10105302 chr2L 10105357 10105398 14 91 4.0 6.5 5.2 2.3 128 chr2L 10105270 intron,intron CG44153 -,CG34109 + chr2L 10105334 intron,intron CG44153 -,CG34109 + chr2L 10105398 intron,intron CG44153 -,CG34109 + chr2L_14_10105001 chr2L_10105001 RAL-42 188 chr2L 10138172 10138192 chr2L 10143437 10143454 Rt1c 6 5263 2.5 17.0 9.8 0.6 5282 chr2L 10138172 intron CG44153 - chr2L 10140813 intron CG44153 - chr2L 10143454 intron CG44153 - chr2L_6_10140001 chr2L_10140001 RAL-42 189 chr2L 10156312 10156355 chr2L 10163802 10163844 blood 9 7487 2.0 7.0 4.5 1.6 7532 chr2L 10156312 intron,3` UTR CG44153 -,CG4839 + chr2L 10160078 intron CG44153 - chr2L 10163844 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-42 190 chr2L 10209839 10209853 chr2L 10209936 10209950 8 96 3.5 0.0 1.8 2.9 111 chr2L 10209839 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209894 3` UTR CG5727 - chr2L 10209950 3` UTR CG5727 - chr2L_8_10205001 chr2L_10205001 RAL-42 191 chr2L 10220278 10220325 chr2L 10220682 10220729 7 404 4.5 4.5 4.5 1.3 451 chr2L 10220278 intron Npc1a - chr2L 10220504 intron Npc1a - chr2L 10220729 intron Npc1a - chr2L_7_10220001 chr2L_10220001 RAL-42 192 chr2L 10232916 10232931 chr2L 10233014 10233029 4 98 3.0 3.0 3.0 1.0 113 chr2L 10232916 intron eEF1delta + chr2L 10232972 intron eEF1delta + chr2L 10233029 intron eEF1delta + chr2L_4_10230001 chr2L_10230001 RAL-42 193 chr2L 10490261 10490297 chr2L 10490361 10490391 5 99 8.0 8.5 8.2 0.5 130 chr2L 10490261 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490326 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490391 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_5_10490001 chr2L_10490001 RAL-42 194 chr2L 10515345 10515381 chr2L 10515458 10515494 5 113 4.5 4.5 4.5 0.9 149 chr2L 10515345 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515494 intron,intron CG45083 -,Fatp - chr2L_5_10515001 chr2L_10515001 RAL-42 195 chr2L 10579032 10579076 chr2L 10579142 10579186 6 109 1.5 5.0 3.2 1.4 154 chr2L 10579032 intron Trim9 + chr2L 10579109 intron Trim9 + chr2L 10579186 intron Trim9 + chr2L_6_10575001 chr2L_10575001 RAL-42 196 chr2L 10592824 10592859 chr2L 10600506 10600541 opus 5 7682 1.0 1.0 1.0 2.5 7717 chr2L 10592824 intron Trim9 + chr2L 10596682 intron Trim9 + chr2L 10600541 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-42 197 chr2L 10688522 10688566 chr2L 10688618 10688662 8 96 2.5 6.0 4.2 1.5 140 chr2L 10688522 intergenic CG7294 - chr2L 10688592 intergenic CG7294 - chr2L 10688662 intergenic CG7294 - chr2L_8_10685001 chr2L_10685001 RAL-42 198 chr2L 10723521 10723546 chr2L 10723635 10723654 4 112 1.5 2.5 2.0 1.3 133 chr2L 10723521 intergenic not near genes chr2L 10723588 intergenic not near genes chr2L 10723654 intergenic not near genes chr2L_4_10720001 chr2L_10720001 RAL-42 199 chr2L 10836743 10836777 chr2L 10836842 10836875 6 98 5.0 3.5 4.2 1.2 132 chr2L 10836743 intron Nos - chr2L 10836809 intron Nos - chr2L 10836875 intron Nos - chr2L_6_10835001 chr2L_10835001 RAL-42 200 chr2L 10849616 10849666 chr2L 10849909 10849938 5 288 1.5 0.5 1.0 2.5 322 chr2L 10849616 5` UTR porin - chr2L 10849777 5` UTR porin - chr2L 10849938 5` UTR porin - chr2L_5_10845001 chr2L_10845001 RAL-42 201 chr2L 10850976 10850988 chr2L 10851078 10851089 6 102 8.0 7.5 7.8 0.7 113 chr2L 10850976 intron CG43129 + chr2L 10851032 intron CG43129 + chr2L 10851089 intron CG43129 + chr2L_6_10850001 chr2L_10850001 RAL-42 202 chr2L 10852391 10852425 chr2L 10852613 10852655 5 225 5.0 3.0 4.0 1.0 264 chr2L 10852391 intron CG43129 + chr2L 10852523 intron CG43129 + chr2L 10852655 intron CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-42 203 chr2L 10862854 10862872 chr2L 10864480 10864482 Rt1c 4 1617 1.0 6.5 3.8 0.8 1628 chr2L 10862854 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864482 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-42 204 chr2L 11056549 11056599 chr2L 11056651 11056701 12 102 3.5 4.0 3.8 2.5 152 chr2L 11056549 intron Samuel - chr2L 11056625 intron Samuel - chr2L 11056701 intron Samuel - chr2L_12_11055001 chr2L_11055001 RAL-42 205 chr2L 11224063 11224082 chr2L 11224194 11224213 4 131 0.0 7.5 3.8 0.8 150 chr2L 11224063 intron ab + chr2L 11224138 intron ab + chr2L 11224213 intron ab + chr2L_4_11220001 chr2L_11220001 RAL-42 206 chr2L 11292365 11292408 chr2L 11292466 11292510 9 100 2.5 8.5 5.5 1.4 145 chr2L 11292365 intergenic not near genes chr2L 11292438 intergenic not near genes chr2L 11292510 intergenic not near genes chr2L_9_11290001 chr2L_11290001 RAL-42 207 chr2L 11347924 11347954 chr2L 11348020 11348050 14 96 26.0 26.5 26.2 0.5 126 chr2L 11347924 intergenic not near genes chr2L 11347987 intergenic not near genes chr2L 11348050 intergenic not near genes chr2L_14_11345001 chr2L_11345001 RAL-42 208 chr2L 11380614 11380628 chr2L 11380691 11380725 4 84 2.0 4.0 3.0 1.0 111 chr2L 11380614 intergenic not near genes chr2L 11380670 intergenic not near genes chr2L 11380725 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-42 209 chr2L 11395034 11395046 chr2L 11395136 11395148 5 102 4.5 5.5 5.0 0.8 114 chr2L 11395034 intergenic not near genes chr2L 11395091 intergenic not near genes chr2L 11395148 intergenic not near genes chr2L_5_11395001 chr2L_11395001 RAL-42 210 chr2L 11404779 11404811 chr2L 11404859 11404907 12 94 1.5 3.0 2.2 3.8 128 chr2L 11404779 intergenic not near genes chr2L 11404843 intergenic not near genes chr2L 11404907 intergenic not near genes chr2L_12_11400001 chr2L_11400001 RAL-42 211 chr2L 11413272 11413316 chr2L 11413416 11413455 7 143 2.0 1.5 1.8 2.5 183 chr2L 11413272 intergenic not near genes chr2L 11413364 intergenic not near genes chr2L 11413455 intergenic not near genes chr2L_7_11410001 chr2L_11410001 RAL-42 212 chr2L 11450105 11450150 chr2L 11450211 11450252 6 104 0.0 1.5 0.8 3.3 147 chr2L 11450105 intergenic not near genes chr2L 11450178 intergenic not near genes chr2L 11450252 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-42 213 chr2L 11540562 11540610 chr2L 11547987 11548032 Tabor 5 7423 2.0 4.0 3.0 1.2 7470 chr2L 11540562 intergenic not near genes chr2L 11544297 intergenic not near genes chr2L 11548032 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-42 214 chr2L 11563622 11563656 chr2L 11568846 11568880 copia 4 5224 0.5 1.5 1.0 2.0 5258 chr2L 11563622 intergenic not near genes chr2L 11566251 intergenic not near genes chr2L 11568880 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-42 215 chr2L 11750314 11750339 chr2L 11750619 11750645 7 306 1.0 8.0 4.5 1.3 331 chr2L 11750314 intergenic not near genes chr2L 11750480 intergenic not near genes chr2L 11750645 intergenic not near genes chr2L_7_11750001 chr2L_11750001 RAL-42 216 chr2L 11841350 11841390 chr2L 11841448 11841488 5 98 4.5 0.5 2.5 1.4 138 chr2L 11841350 intron Pde1c - chr2L 11841419 intron Pde1c - chr2L 11841488 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-42 217 chr2L 11905111 11905157 chr2L 11905224 11905270 16 113 2.0 4.0 3.0 4.0 159 chr2L 11905111 intron Pde1c - chr2L 11905190 intron Pde1c - chr2L 11905270 intron Pde1c - chr2L_16_11905001 chr2L_11905001 RAL-42 218 chr2L 12067308 12067358 chr2L 12074380 12074430 297 10 7072 6.5 6.0 6.2 1.4 7122 chr2L 12067308 intergenic not near genes chr2L 12070869 intergenic not near genes chr2L 12074430 intergenic not near genes chr2L_10_12070001 chr2L_12070001 RAL-42 219 chr2L 12180825 12180873 chr2L 12180947 12180987 7 115 1.0 0.5 0.8 3.9 162 chr2L 12180825 intron aret + chr2L 12180906 intron aret + chr2L 12180987 intron aret + chr2L_7_12180001 chr2L_12180001 RAL-42 220 chr2L 12255837 12255887 chr2L 12255953 12256003 13 116 6.0 5.0 5.5 2.0 166 chr2L 12255837 intron aret + chr2L 12255920 intron aret + chr2L 12256003 intron aret + chr2L_13_12255001 chr2L_12255001 RAL-42 221 chr2L 12283546 12283587 chr2L 12283645 12283685 7 96 0.5 0.0 0.2 5.8 139 chr2L 12283546 intron aret + chr2L 12283616 intron aret + chr2L 12283685 intron aret + chr2L_7_12280001 chr2L_12280001 RAL-42 222 chr2L 12323740 12323769 chr2L 12323861 12323890 4 121 1.5 3.0 2.2 1.2 150 chr2L 12323740 intergenic not near genes chr2L 12323815 intergenic not near genes chr2L 12323890 intergenic not near genes chr2L_4_12320001 chr2L_12320001 RAL-42 223 chr2L 12410992 12411032 chr2L 12411091 12411131 10 98 1.5 0.0 0.8 5.6 139 chr2L 12410992 intron vir-1 - chr2L 12411062 intron vir-1 - chr2L 12411131 intron vir-1 - chr2L_10_12410001 chr2L_12410001 RAL-42 224 chr2L 12413826 12413859 chr2L 12414086 12414120 4 260 4.5 0.0 2.2 1.2 294 chr2L 12413826 intron vir-1 - chr2L 12413973 intron vir-1 - chr2L 12414120 intron vir-1 - chr2L_4_12410001 chr2L_12410001 RAL-42 225 chr2L 12420956 12421002 chr2L 12421304 12421353 6 350 5.0 1.0 3.0 1.5 397 chr2L 12420956 intron vir-1 - chr2L 12421154 intron vir-1 - chr2L 12421353 intron vir-1 - chr2L_6_12420001 chr2L_12420001 RAL-42 226 chr2L 12424345 12424378 chr2L 12424441 12424474 6 96 0.0 4.5 2.2 1.9 129 chr2L 12424345 intergenic not near genes chr2L 12424410 intergenic CG6405 + chr2L 12424474 intergenic CG6405 + chr2L_6_12420001 chr2L_12420001 RAL-42 227 chr2L 12479876 12479912 chr2L 12479989 12480004 6 109 1.5 6.5 4.0 1.2 128 chr2L 12479876 intron bun - chr2L 12479940 intron bun - chr2L 12480004 intron bun - chr2L_6_12475001 chr2L_12475001 RAL-42 228 chr2L 12490084 12490110 chr2L 12490243 12490269 4 159 0.0 0.5 0.2 3.3 185 chr2L 12490084 intron bun - chr2L 12490176 intron bun - chr2L 12490269 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-42 229 chr2L 12529215 12529261 chr2L 12529387 12529433 5 169 1.0 4.0 2.5 1.4 218 chr2L 12529215 intron bun - chr2L 12529324 intron bun - chr2L 12529433 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-42 230 chr2L 12547446 12547487 chr2L 12547550 12547585 4 101 0.0 0.0 0.0 4.0 139 chr2L 12547446 intergenic not near genes chr2L 12547516 intergenic not near genes chr2L 12547585 intergenic not near genes chr2L_4_12545001 chr2L_12545001 RAL-42 231 chr2L 12558299 12558350 chr2L 12565448 12565499 HMS-Beagle 4 7148 0.5 2.0 1.2 1.8 7200 chr2L 12558299 intergenic not near genes chr2L 12561899 intergenic not near genes chr2L 12565499 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-42 232 chr2L 12625137 12625191 chr2L 12625249 12625304 14 110 2.0 5.0 3.5 3.1 167 chr2L 12625137 intron,intron nub +,Ref2 - chr2L 12625220 intron,intron nub +,Ref2 - chr2L 12625304 intron,intron nub +,Ref2 - chr2L_14_12625001 chr2L_12625001 RAL-42 233 chr2L 12638758 12638808 chr2L 12638881 12638931 11 123 4.0 3.0 3.5 2.4 173 chr2L 12638758 intron Ref2 - chr2L 12638844 intron Ref2 - chr2L 12638931 intron Ref2 - chr2L_11_12635001 chr2L_12635001 RAL-42 234 chr2L 12684205 12684249 chr2L 12684306 12684350 30 101 5.0 8.5 6.8 3.8 145 chr2L 12684205 intron pdm2 + chr2L 12684278 intron pdm2 + chr2L 12684350 intron pdm2 + chr2L_30_12680001 chr2L_12680001 RAL-42 235 chr2L 12728901 12728946 chr2L 12729161 12729206 pogo 18 259 5.5 0.5 3.0 4.5 305 chr2L 12728901 intron MRP + chr2L 12729054 intron MRP + chr2L 12729206 exon MRP + chr2L_18_12725001 chr2L_12725001 RAL-42 236 chr2L 12731039 12731089 chr2L 12735826 12735876 F-element 19 4787 5.5 5.5 5.5 2.9 4837 chr2L 12731039 intron MRP + chr2L 12733458 intron MRP + chr2L 12735876 intron MRP + chr2L_19_12730001 chr2L_12730001 RAL-42 237 chr2L 12739163 12739196 chr2L 12743964 12743997 Doc 7 4800 6.0 9.5 7.8 0.8 4834 chr2L 12739163 exon MRP + chr2L 12741580 intron MRP + chr2L 12743997 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-42 238 chr2L 12751290 12751317 chr2L 12751393 12751420 4 102 1.5 2.0 1.8 1.4 130 chr2L 12751290 intergenic not near genes chr2L 12751355 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-42 239 chr2L 12753957 12754001 chr2L 12754081 12754125 10 124 4.0 3.5 3.8 2.1 168 chr2L 12753957 intergenic not near genes chr2L 12754041 intergenic not near genes chr2L 12754125 intergenic not near genes chr2L_10_12750001 chr2L_12750001 RAL-42 240 chr2L 12781781 12781805 chr2L 12789251 12789275 Quasimodo 6 7470 3.0 2.0 2.5 1.7 7494 chr2L 12781781 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789275 intergenic not near genes chr2L_6_12785001 chr2L_12785001 RAL-42 241 chr2L 12791620 12791628 chr2L 12795283 12795323 F-element 4 3683 2.0 3.5 2.8 1.1 3703 chr2L 12791620 intergenic not near genes chr2L 12793472 intergenic not near genes chr2L 12795323 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-42 242 chr2L 12905458 12905507 chr2L 12905562 12905611 17 103 3.5 4.5 4.0 3.4 153 chr2L 12905458 intergenic not near genes chr2L 12905534 intergenic not near genes chr2L 12905611 intergenic not near genes chr2L_17_12905001 chr2L_12905001 RAL-42 243 chr2L 12930471 12930497 chr2L 12930567 12930593 9 94 2.0 6.5 4.2 1.7 122 chr2L 12930471 intergenic not near genes chr2L 12930532 intergenic not near genes chr2L 12930593 intergenic not near genes chr2L_9_12930001 chr2L_12930001 RAL-42 244 chr2L 12933832 12933880 chr2L 12941319 12941365 blood 10 7486 2.5 3.0 2.8 2.6 7533 chr2L 12933832 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941365 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-42 245 chr2L 13036230 13036275 chr2L 13036492 13036537 X-element 9 262 1.0 6.0 3.5 2.0 307 chr2L 13036230 intron CG9932 - chr2L 13036384 intron CG9932 - chr2L 13036537 intron CG9932 - chr2L_9_13035001 chr2L_13035001 RAL-42 246 chr2L 13109437 13109477 chr2L 13109585 13109610 8 146 5.0 9.5 7.2 1.0 173 chr2L 13109437 3` UTR CG5142 + chr2L 13109524 intergenic CG5142 + chr2L 13109610 intergenic CG5142 + chr2L_8_13105001 chr2L_13105001 RAL-42 247 chr2L 13152218 13152260 chr2L 13152316 13152335 4 92 2.5 1.0 1.8 1.4 117 chr2L 13152218 intergenic not near genes chr2L 13152276 intergenic not near genes chr2L 13152335 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-42 248 chr2L 13266365 13266411 chr2L 13266473 13266519 12 106 3.5 5.0 4.2 2.3 154 chr2L 13266365 intron CG44085 + chr2L 13266442 intron CG44085 + chr2L 13266519 intron CG44085 + chr2L_12_13265001 chr2L_13265001 RAL-42 249 chr2L 13346030 13346073 chr2L 13346133 13346177 12 104 5.0 11.0 8.0 1.3 147 chr2L 13346030 intergenic not near genes chr2L 13346104 intergenic not near genes chr2L 13346177 intergenic not near genes chr2L_12_13345001 chr2L_13345001 RAL-42 250 chr2L 13405633 13405670 chr2L 13410450 13410487 Doc 9 4817 3.0 9.5 6.2 1.2 4854 chr2L 13405633 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410487 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-42 251 chr2L 13449448 13449494 chr2L 13456904 13456950 Quasimodo 26 7456 6.0 7.5 6.8 3.3 7502 chr2L 13449448 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453199 intron CG42784 + chr2L 13456950 intron CG42784 + chr2L_26_13450001 chr2L_13450001 RAL-42 252 chr2L 13481452 13481470 chr2L 13482063 13482097 jockey 5 624 4.0 3.0 3.5 1.1 645 chr2L 13481452 intron CG42784 + chr2L 13481774 intron CG42784 + chr2L 13482097 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-42 253 chr2L 13515360 13515372 chr2L 13515457 13515469 5 97 12.0 6.0 9.0 0.5 109 chr2L 13515360 intron B4 - chr2L 13515414 intron B4 - chr2L 13515469 intron B4 - chr2L_5_13515001 chr2L_13515001 RAL-42 254 chr2L 13556399 13556438 chr2L 13556495 13556535 8 96 3.5 5.0 4.2 1.5 136 chr2L 13556399 intron kuz + chr2L 13556467 intron kuz + chr2L 13556535 intron kuz + chr2L_8_13555001 chr2L_13555001 RAL-42 255 chr2L 13560383 13560421 chr2L 13565224 13565262 F-element 11 4840 9.5 5.0 7.2 1.3 4879 chr2L 13560383 intron kuz + chr2L 13562822 intron kuz + chr2L 13565262 intron kuz + chr2L_11_13560001 chr2L_13560001 RAL-42 256 chr2L 13567453 13567492 chr2L 13567551 13567590 6 96 1.0 3.0 2.0 2.0 137 chr2L 13567453 intron kuz + chr2L 13567522 intron kuz + chr2L 13567590 intron kuz + chr2L_6_13565001 chr2L_13565001 RAL-42 257 chr2L 13644496 13644546 chr2L 13644595 13644636 7 92 3.5 0.5 2.0 2.3 140 chr2L 13644496 intergenic not near genes chr2L 13644566 intergenic not near genes chr2L 13644636 intergenic not near genes chr2L_7_13640001 chr2L_13640001 RAL-42 258 chr2L 13713534 13713571 chr2L 13713630 13713667 12 96 6.0 0.0 3.0 3.0 133 chr2L 13713534 intron CG31814 - chr2L 13713600 intron CG31814 - chr2L 13713667 intron CG31814 - chr2L_12_13710001 chr2L_13710001 RAL-42 259 chr2L 13862328 13862351 chr2L 13862441 13862464 6 113 2.5 7.5 5.0 1.0 136 chr2L 13862328 intron CenG1A + chr2L 13862396 intron CenG1A + chr2L 13862464 intron CenG1A + chr2L_6_13860001 chr2L_13860001 RAL-42 260 chr2L 13972328 13972363 chr2L 13972873 13972908 15 545 2.5 3.0 2.8 3.9 580 chr2L 13972328 exon He - chr2L 13972618 intron He - chr2L 13972908 5` UTR He - chr2L_15_13970001 chr2L_13970001 RAL-42 261 chr2L 13988268 13988295 chr2L 13988375 13988402 5 107 4.0 3.5 3.8 1.0 134 chr2L 13988268 intron rk - chr2L 13988335 intron rk - chr2L 13988402 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-42 262 chr2L 14149145 14149178 chr2L 14149325 14149359 4 179 7.0 3.5 5.2 0.6 214 chr2L 14149145 intron CG17341 + chr2L 14149252 intron CG17341 + chr2L 14149359 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-42 263 chr2L 14160676 14160718 chr2L 14160782 14160824 8 106 4.5 2.5 3.5 1.8 148 chr2L 14160676 intergenic CG17341 +,CG43332 - chr2L 14160750 intergenic CG17341 +,CG43332 - chr2L 14160824 intergenic CG17341 +,CG43332 - chr2L_8_14160001 chr2L_14160001 RAL-42 264 chr2L 14180047 14180094 chr2L 14180143 14180190 18 96 4.5 3.0 3.8 3.8 143 chr2L 14180047 intron CG43333 - chr2L 14180118 intron CG43333 - chr2L 14180190 intron CG43333 - chr2L_18_14180001 chr2L_14180001 RAL-42 265 chr2L 14285273 14285313 chr2L 14285437 14285475 4 164 0.5 0.5 0.5 2.7 202 chr2L 14285273 intron wb + chr2L 14285374 intron wb + chr2L 14285475 intron wb + chr2L_4_14285001 chr2L_14285001 RAL-42 266 chr2L 14524597 14524650 chr2L 14525115 14525168 17 518 3.5 6.0 4.8 2.9 571 chr2L 14524597 intron CG33648 + chr2L 14524882 intron CG33648 + chr2L 14525168 exon CG33648 + chr2L_17_14520001 chr2L_14520001 RAL-42 267 chr2L 14564198 14564228 chr2L 14564277 14564282 8 71 0.5 3.0 1.8 2.9 84 chr2L 14564198 intergenic CG3473 - chr2L 14564240 intergenic not near genes chr2L 14564282 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-42 268 chr2L 14570700 14570719 chr2L 14570801 14570820 4 101 0.0 4.5 2.2 1.2 120 chr2L 14570700 intergenic not near genes chr2L 14570760 intergenic not near genes chr2L 14570820 intergenic not near genes chr2L_4_14570001 chr2L_14570001 RAL-42 269 chr2L 14624533 14624563 chr2L 14624632 14624662 5 99 5.0 2.0 3.5 1.1 129 chr2L 14624533 intron osp - chr2L 14624598 intron osp - chr2L 14624662 intron osp - chr2L_5_14620001 chr2L_14620001 RAL-42 270 chr2L 14642548 14642604 chr2L 14651731 14651787 roo 7 9182 0.0 3.5 1.8 2.5 9239 chr2L 14642548 intron osp - chr2L 14647168 intron osp - chr2L 14651787 intron osp - chr2L_7_14645001 chr2L_14645001 RAL-42 271 chr2L 14694233 14694260 chr2L 14694377 14694404 4 144 3.5 0.5 2.0 1.3 171 chr2L 14694233 intergenic not near genes chr2L 14694318 intergenic not near genes chr2L 14694404 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-42 272 chr2L 14840955 14841010 chr2L 14841063 14841117 9 107 2.0 2.0 2.0 3.0 162 chr2L 14840955 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841117 3` UTR CR43805 - chr2L_9_14840001 chr2L_14840001 RAL-42 273 chr2L 14849262 14849311 chr2L 14849372 14849421 10 109 1.5 0.5 1.0 5.0 159 chr2L 14849262 intron CG15279 - chr2L 14849342 intron CG15279 - chr2L 14849421 intron CG15279 - chr2L_10_14845001 chr2L_14845001 RAL-42 274 chr2L 14889933 14889980 chr2L 14890378 14890424 jockey 5 443 2.5 0.5 1.5 2.0 491 chr2L 14889933 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890424 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-42 275 chr2L 14964097 14964137 chr2L 14964521 14964561 6 422 4.0 2.0 3.0 1.5 464 chr2L 14964097 intron CG42313 - chr2L 14964329 intron CG42313 - chr2L 14964561 intron CG42313 - chr2L_6_14960001 chr2L_14960001 RAL-42 276 chr2L 14984371 14984380 chr2L 14991977 14991984 opus 5 7609 2.5 3.5 3.0 1.2 7613 chr2L 14984371 intron mol - chr2L 14988178 intron mol - chr2L 14991984 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-42 277 chr2L 14984381 14984390 chr2L 14991976 14992012 opus 8 7614 2.0 3.5 2.8 2.1 7631 chr2L 14984381 intron mol - chr2L 14988196 intron mol - chr2L 14992012 intron mol - chr2L_8_14985001 chr2L_14985001 RAL-42 278 chr2L 15013138 15013178 chr2L 15013262 15013289 10 123 1.0 4.0 2.5 2.9 151 chr2L 15013138 intergenic CR43856 - chr2L 15013214 intergenic not near genes chr2L 15013289 intergenic not near genes chr2L_10_15010001 chr2L_15010001 RAL-42 279 chr2L 15014607 15014625 chr2L 15014706 15014724 6 99 2.0 4.0 3.0 1.5 117 chr2L 15014607 intergenic not near genes chr2L 15014666 intergenic not near genes chr2L 15014724 intergenic not near genes chr2L_6_15010001 chr2L_15010001 RAL-42 280 chr2L 15078049 15078102 chr2L 15078156 15078210 13 105 1.5 1.5 1.5 5.2 161 chr2L 15078049 intron CG15270 + chr2L 15078130 intron CG15270 + chr2L 15078210 intron CG15270 + chr2L_13_15075001 chr2L_15075001 RAL-42 281 chr2L 15127749 15127788 chr2L 15127855 15127894 8 101 5.5 4.0 4.8 1.4 145 chr2L 15127749 intergenic not near genes chr2L 15127822 intergenic not near genes chr2L 15127894 intergenic not near genes chr2L_8_15125001 chr2L_15125001 RAL-42 282 chr2L 15226368 15226396 chr2L 15226464 15226492 5 96 2.0 5.0 3.5 1.1 124 chr2L 15226368 intergenic not near genes chr2L 15226430 intergenic not near genes chr2L 15226492 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-42 283 chr2L 15252961 15253002 chr2L 15253060 15253101 15 99 7.5 3.5 5.5 2.3 140 chr2L 15252961 intron dao + chr2L 15253031 intron dao + chr2L 15253101 intron dao + chr2L_15_15250001 chr2L_15250001 RAL-42 284 chr2L 15446039 15446080 chr2L 15453528 15453565 blood 9 7488 1.5 4.5 3.0 2.2 7526 chr2L 15446039 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453565 intergenic not near genes chr2L_9_15445001 chr2L_15445001 RAL-42 285 chr2L 15458283 15458286 chr2L 15458376 15458394 4 104 0.0 7.5 3.8 0.8 111 chr2L 15458283 intergenic not near genes chr2L 15458338 intergenic not near genes chr2L 15458394 intergenic not near genes chr2L_4_15455001 chr2L_15455001 RAL-42 286 chr2L 15510915 15510967 chr2L 15511029 15511081 12 112 2.0 3.0 2.5 3.4 166 chr2L 15510915 intergenic not near genes chr2L 15510998 intergenic not near genes chr2L 15511081 intergenic not near genes chr2L_12_15510001 chr2L_15510001 RAL-42 287 chr2L 15535864 15535914 chr2L 15535974 15536024 9 108 4.5 4.5 4.5 1.6 160 chr2L 15535864 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536024 intergenic not near genes chr2L_9_15535001 chr2L_15535001 RAL-42 288 chr2L 15574983 15575005 chr2L 15575411 15575435 4 429 2.5 5.0 3.8 0.8 452 chr2L 15574983 intron kek3 + chr2L 15575209 intron kek3 + chr2L 15575435 intron kek3 + chr2L_4_15575001 chr2L_15575001 RAL-42 289 chr2L 15586395 15586440 chr2L 15593467 15593512 297 9 7072 4.0 5.0 4.5 1.6 7117 chr2L 15586395 intergenic not near genes chr2L 15589954 intergenic not near genes chr2L 15593512 intergenic not near genes chr2L_9_15585001 chr2L_15585001 RAL-42 290 chr2L 15598774 15598799 chr2L 15598873 15598898 7 99 4.5 0.0 2.2 2.2 124 chr2L 15598774 intergenic not near genes chr2L 15598836 intergenic not near genes chr2L 15598898 intergenic not near genes chr2L_7_15595001 chr2L_15595001 RAL-42 291 chr2L 15777801 15777824 chr2L 15778007 15778030 4 205 3.0 5.0 4.0 0.8 229 chr2L 15777801 intergenic not near genes chr2L 15777916 intergenic not near genes chr2L 15778030 intergenic not near genes chr2L_4_15775001 chr2L_15775001 RAL-42 292 chr2L 15823341 15823362 chr2L 15823437 15823458 5 95 2.0 0.0 1.0 2.5 117 chr2L 15823341 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823458 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-42 293 chr2L 15826875 15826888 chr2L 15829289 15829302 Tabor 5 2414 4.0 8.0 6.0 0.7 2427 chr2L 15826875 intergenic not near genes chr2L 15828088 intergenic not near genes chr2L 15829302 intergenic not near genes chr2L_5_15825001 chr2L_15825001 RAL-42 294 chr2L 16001455 16001494 chr2L 16001563 16001602 14 108 0.0 4.0 2.0 4.7 147 chr2L 16001455 intron beat-Ic + chr2L 16001528 intron beat-Ic + chr2L 16001602 intron beat-Ic + chr2L_14_16000001 chr2L_16000001 RAL-42 295 chr2L 16027390 16027419 chr2L 16027486 16027515 6 96 1.0 5.5 3.2 1.4 125 chr2L 16027390 intron beat-Ic + chr2L 16027452 intron beat-Ic + chr2L 16027515 intron beat-Ic + chr2L_6_16025001 chr2L_16025001 RAL-42 296 chr2L 16059940 16059970 chr2L 16060058 16060088 4 118 3.0 1.5 2.2 1.2 148 chr2L 16059940 intron beat-Ia + chr2L 16060014 intron beat-Ia + chr2L 16060088 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-42 297 chr2L 16141148 16141185 chr2L 16146375 16146411 copia 9 5227 3.0 4.0 3.5 2.0 5263 chr2L 16141148 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146411 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-42 298 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 6.5 13.0 9.8 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-42 299 chr2L 16259510 16259551 chr2L 16259612 16259653 18 102 8.0 8.0 8.0 2.0 143 chr2L 16259510 3` UTR twe - chr2L 16259582 3` UTR twe - chr2L 16259653 3` UTR twe - chr2L_18_16255001 chr2L_16255001 RAL-42 300 chr2L 16354762 16354786 chr2L 16354874 16354884 9 109 4.5 7.5 6.0 1.3 122 chr2L 16354762 intergenic CaBP1 -,CG4455 + chr2L 16354823 intergenic CaBP1 -,CG4455 + chr2L 16354884 intergenic CaBP1 -,CG4455 + chr2L_9_16350001 chr2L_16350001 RAL-42 301 chr2L 16511943 16511992 chr2L 16519077 16519126 HMS-Beagle 19 7134 5.0 6.0 5.5 2.9 7183 chr2L 16511943 intron CG5953 - chr2L 16515534 intron CG5953 - chr2L 16519126 intron CG5953 - chr2L_19_16515001 chr2L_16515001 RAL-42 302 chr2L 16654683 16654721 chr2L 16654795 16654833 9 112 5.5 3.5 4.5 1.6 150 chr2L 16654683 intron CG42389 + chr2L 16654758 intron CG42389 + chr2L 16654833 intron CG42389 + chr2L_9_16650001 chr2L_16650001 RAL-42 303 chr2L 16688380 16688407 chr2L 16688481 16688508 9 101 0.5 6.0 3.2 2.1 128 chr2L 16688380 intron grp + chr2L 16688444 intron grp + chr2L 16688508 intron grp + chr2L_9_16685001 chr2L_16685001 RAL-42 304 chr2L 16700884 16700924 chr2L 16701045 16701079 8 159 1.0 2.0 1.5 3.2 195 chr2L 16700884 intergenic not near genes chr2L 16700982 intergenic not near genes chr2L 16701079 intergenic not near genes chr2L_8_16700001 chr2L_16700001 RAL-42 305 chr2L 16764953 16764998 chr2L 16765053 16765098 10 100 5.0 2.5 3.8 2.1 145 chr2L 16764953 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765098 intergenic not near genes chr2L_10_16765001 chr2L_16765001 RAL-42 306 chr2L 16958090 16958137 chr2L 16962898 16962929 Doc 16 4806 4.0 6.0 5.0 2.7 4839 chr2L 16958090 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962929 intergenic not near genes chr2L_16_16960001 chr2L_16960001 RAL-42 307 chr2L 16968223 16968264 chr2L 16968333 16968374 7 108 3.5 6.5 5.0 1.2 151 chr2L 16968223 intergenic not near genes chr2L 16968298 intergenic not near genes chr2L 16968374 intergenic not near genes chr2L_7_16965001 chr2L_16965001 RAL-42 308 chr2L 17053281 17053308 chr2L 17053711 17053738 5 430 1.5 4.5 3.0 1.2 457 chr2L 17053281 intergenic not near genes chr2L 17053510 intergenic not near genes chr2L 17053738 intergenic not near genes chr2L_5_17050001 chr2L_17050001 RAL-42 309 chr2L 17070181 17070217 chr2L 17070297 17070332 4 116 2.0 6.5 4.2 0.8 151 chr2L 17070181 intergenic not near genes chr2L 17070256 intergenic not near genes chr2L 17070332 intergenic not near genes chr2L_4_17070001 chr2L_17070001 RAL-42 310 chr2L 17087367 17087398 chr2L 17087505 17087509 5 133 1.5 2.0 1.8 1.8 142 chr2L 17087367 intergenic CG12620 + chr2L 17087438 intergenic CG12620 + chr2L 17087509 intergenic CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-42 311 chr2L 17095829 17095869 chr2L 17095970 17096010 9 140 2.5 5.0 3.8 1.9 181 chr2L 17095829 intergenic not near genes chr2L 17095920 intergenic not near genes chr2L 17096010 intergenic not near genes chr2L_9_17095001 chr2L_17095001 RAL-42 312 chr2L 17167545 17167591 chr2L 17167806 17167852 pogo 7 261 1.5 1.5 1.5 2.8 307 chr2L 17167545 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167852 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-42 313 chr2L 17199147 17199190 chr2L 17200634 17200677 hobo 8 1485 1.0 3.5 2.2 2.5 1530 chr2L 17199147 intron beat-IIIc - chr2L 17199912 intron beat-IIIc - chr2L 17200677 intron beat-IIIc - chr2L_8_17195001 chr2L_17195001 RAL-42 314 chr2L 17273182 17273215 chr2L 17277979 17278018 F-element 4 4800 5.0 2.5 3.8 0.8 4836 chr2L 17273182 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278018 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-42 315 chr2L 17386002 17386038 chr2L 17386103 17386139 11 101 7.5 8.5 8.0 1.2 137 chr2L 17386002 intron CLIP-190 + chr2L 17386070 intron CLIP-190 + chr2L 17386139 intron CLIP-190 + chr2L_11_17385001 chr2L_17385001 RAL-42 316 chr2L 17432008 17432036 chr2L 17432135 17432163 1360 5 126 0.0 3.5 1.8 1.8 155 chr2L 17432008 intron Dif - chr2L 17432086 intron Dif - chr2L 17432163 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-42 317 chr2L 17466420 17466452 chr2L 17466533 17466565 5 113 1.0 4.5 2.8 1.3 145 chr2L 17466420 intron BicD - chr2L 17466492 intron BicD - chr2L 17466565 intron BicD - chr2L_5_17465001 chr2L_17465001 RAL-42 318 chr2L 17543577 17543612 chr2L 17543690 17543724 9 112 4.5 1.5 3.0 2.2 147 chr2L 17543577 intergenic not near genes chr2L 17543650 intergenic not near genes chr2L 17543724 intergenic not near genes chr2L_9_17540001 chr2L_17540001 RAL-42 319 chr2L 17554057 17554089 chr2L 17554153 17554185 9 96 3.0 4.0 3.5 2.0 128 chr2L 17554057 intergenic CG7094 - chr2L 17554121 intergenic CG7094 - chr2L 17554185 intergenic CG7094 - chr2L_9_17550001 chr2L_17550001 RAL-42 320 chr2L 17565120 17565148 chr2L 17565233 17565260 11 112 3.0 4.0 3.5 2.4 140 chr2L 17565120 intergenic not near genes chr2L 17565190 intergenic not near genes chr2L 17565260 intergenic not near genes chr2L_11_17565001 chr2L_17565001 RAL-42 321 chr2L 17819905 17819951 chr2L 17825127 17825174 copia 11 5220 2.0 2.0 2.0 3.7 5269 chr2L 17819905 intron CadN2 - chr2L 17822540 intron CadN2 - chr2L 17825174 intron CadN2 - chr2L_11_17820001 chr2L_17820001 RAL-42 322 chr2L 17951935 17951976 chr2L 17953412 17953463 hobo 25 1486 6.5 3.5 5.0 4.2 1528 chr2L 17951935 intergenic CR44398 -,CR44397 - chr2L 17952699 intergenic not near genes chr2L 17953463 intergenic not near genes chr2L_25_17950001 chr2L_17950001 RAL-42 323 chr2L 18047016 18047040 chr2L 18047113 18047140 5 101 3.0 3.5 3.2 1.2 124 chr2L 18047016 intron rdo + chr2L 18047078 intron rdo + chr2L 18047140 intron rdo + chr2L_5_18045001 chr2L_18045001 RAL-42 324 chr2L 18135000 18135036 chr2L 18135108 18135148 5 109 0.0 0.0 0.0 5.0 148 chr2L 18135000 intron kel - chr2L 18135074 intron kel - chr2L 18135148 intron kel - chr2L_5_18135001 chr2L_18135001 RAL-42 325 chr2L 18154049 18154083 chr2L 18154483 18154517 8 434 0.0 2.5 1.2 3.6 468 chr2L 18154049 exon CG17681 + chr2L 18154283 exon CG17681 + chr2L 18154517 intergenic CG17681 +,CG15155 + chr2L_8_18150001 chr2L_18150001 RAL-42 326 chr2L 18184982 18185020 chr2L 18185120 18185158 8 138 7.5 3.0 5.2 1.3 176 chr2L 18184982 intron,5` UTR CG42750 -,CG7180 - chr2L 18185070 intron CG42750 - chr2L 18185158 intron CG42750 - chr2L_8_18185001 chr2L_18185001 RAL-42 327 chr2L 18210234 18210246 chr2L 18210349 18210361 6 115 6.0 9.5 7.8 0.7 127 chr2L 18210234 intron CG42750 - chr2L 18210298 intron CG42750 - chr2L 18210361 intron CG42750 - chr2L_6_18210001 chr2L_18210001 RAL-42 328 chr2L 18221604 18221651 chr2L 18221701 18221749 4 97 3.0 2.0 2.5 1.1 145 chr2L 18221604 intron CG42750 - chr2L 18221676 intron CG42750 - chr2L 18221749 intron CG42750 - chr2L_4_18220001 chr2L_18220001 RAL-42 329 chr2L 18243360 18243389 chr2L 18243457 18243486 9 97 2.0 4.0 3.0 2.2 126 chr2L 18243360 intron CG42750 - chr2L 18243423 intron CG42750 - chr2L 18243486 intron CG42750 - chr2L_9_18240001 chr2L_18240001 RAL-42 330 chr2L 18309462 18309512 chr2L 18309628 18309678 9 166 3.5 3.5 3.5 2.0 216 chr2L 18309462 intergenic CG43354 -,CR44694 + chr2L 18309570 intergenic CR44694 +,CG43354 - chr2L 18309678 5` UTR CR44694 + chr2L_9_18305001 chr2L_18305001 RAL-42 331 chr2L 18315231 18315275 chr2L 18315331 18315375 4 99 1.5 2.0 1.8 1.4 144 chr2L 18315231 intergenic not near genes chr2L 18315303 intergenic not near genes chr2L 18315375 intergenic not near genes chr2L_4_18315001 chr2L_18315001 RAL-42 332 chr2L 18398417 18398433 chr2L 18398515 18398531 9 98 4.0 6.5 5.2 1.5 114 chr2L 18398417 intergenic not near genes chr2L 18398474 intergenic not near genes chr2L 18398531 intergenic not near genes chr2L_9_18395001 chr2L_18395001 RAL-42 333 chr2L 18408017 18408034 chr2L 18412821 18412838 Doc 6 4804 6.0 0.0 3.0 1.5 4821 chr2L 18408017 intergenic not near genes chr2L 18410428 intergenic not near genes chr2L 18412838 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-42 334 chr2L 18509789 18509804 chr2L 18509977 18509992 6 188 0.0 1.0 0.5 4.0 203 chr2L 18509789 intron CG10178 + chr2L 18509890 intron CG10178 + chr2L 18509992 intron CG10178 + chr2L_6_18505001 chr2L_18505001 RAL-42 335 chr2L 18587796 18587808 chr2L 18587938 18587950 5 142 3.0 0.5 1.8 1.8 154 chr2L 18587796 intron Pde11 - chr2L 18587873 intron Pde11 - chr2L 18587950 intron Pde11 - chr2L_5_18585001 chr2L_18585001 RAL-42 336 chr2L 18653980 18654028 chr2L 18654152 18654199 13 170 3.0 4.5 3.8 2.7 219 chr2L 18653980 intron MESR3 + chr2L 18654090 intron MESR3 + chr2L 18654199 intron MESR3 + chr2L_13_18650001 chr2L_18650001 RAL-42 337 chr2L 18678368 18678370 chr2L 18678473 18678475 4 105 7.0 3.0 5.0 0.7 107 chr2L 18678368 intron CG31751 + chr2L 18678422 intron CG31751 + chr2L 18678475 intron CG31751 + chr2L_4_18675001 chr2L_18675001 RAL-42 338 chr2L 18883835 18883885 chr2L 18883937 18883987 8 101 2.5 4.5 3.5 1.8 152 chr2L 18883835 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883987 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-42 339 chr2L 18902610 18902653 chr2L 18902911 18902954 12 298 3.5 4.0 3.8 2.5 344 chr2L 18902610 intergenic not near genes chr2L 18902782 intergenic not near genes chr2L 18902954 intergenic not near genes chr2L_12_18900001 chr2L_18900001 RAL-42 340 chr2L 18981751 18981782 chr2L 18981834 18981878 5 91 1.5 4.0 2.8 1.3 127 chr2L 18981751 intron Swip-1 - chr2L 18981814 intron Swip-1 - chr2L 18981878 intron Swip-1 - chr2L_5_18980001 chr2L_18980001 RAL-42 341 chr2L 19016228 19016275 chr2L 19016344 19016391 28 115 4.5 7.0 5.8 4.1 163 chr2L 19016228 intergenic not near genes chr2L 19016310 intergenic not near genes chr2L 19016391 intergenic not near genes chr2L_28_19015001 chr2L_19015001 RAL-42 342 chr2L 19035916 19035939 chr2L 19036006 19036034 6 99 3.0 6.5 4.8 1.0 118 chr2L 19035916 intron mib2 + chr2L 19035975 intron mib2 + chr2L 19036034 intron mib2 + chr2L_6_19035001 chr2L_19035001 RAL-42 343 chr2L 19147366 19147402 chr2L 19154418 19154457 297 6 7052 2.0 5.0 3.5 1.3 7091 chr2L 19147366 intron brat + chr2L 19150912 intron brat + chr2L 19154457 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-42 344 chr2L 19237300 19237339 chr2L 19237417 19237450 10 117 5.5 8.0 6.8 1.3 150 chr2L 19237300 intergenic not near genes chr2L 19237375 intergenic not near genes chr2L 19237450 intergenic not near genes chr2L_10_19235001 chr2L_19235001 RAL-42 345 chr2L 19345013 19345030 chr2L 19357242 19357259 blood 6 12228 1.0 5.0 3.0 1.5 12246 chr2L 19345013 intron dnt - chr2L 19351136 intron dnt - chr2L 19357259 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-42 346 chr2L 19357535 19357564 chr2L 19357645 19357674 6 110 3.0 3.5 3.2 1.4 139 chr2L 19357535 intron dnt - chr2L 19357604 intron dnt - chr2L 19357674 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-42 347 chr2L 19374495 19374517 chr2L 19374609 19374646 9 127 2.5 5.0 3.8 1.9 151 chr2L 19374495 intergenic not near genes chr2L 19374570 intergenic not near genes chr2L 19374646 intergenic not near genes chr2L_9_19370001 chr2L_19370001 RAL-42 348 chr2L 19405599 19405629 chr2L 19405709 19405739 7 110 7.5 2.0 4.8 1.2 140 chr2L 19405599 intron Pax - chr2L 19405669 intron Pax - chr2L 19405739 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-42 349 chr2L 19441059 19441089 chr2L 19441156 19441184 6 97 5.5 5.0 5.2 1.0 125 chr2L 19441059 intron CG10237 - chr2L 19441122 intron CG10237 - chr2L 19441184 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-42 350 chr2L 19601560 19601600 chr2L 19601656 19601692 9 96 2.5 2.5 2.5 2.6 132 chr2L 19601560 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601692 intron,intron Lar +,CR44978 - chr2L_9_19600001 chr2L_19600001 RAL-42 351 chr2L 19620093 19620125 chr2L 19621091 19621124 jockey 5 1001 4.0 2.0 3.0 1.2 1031 chr2L 19620093 intron Lar + chr2L 19620608 intron Lar + chr2L 19621124 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-42 352 chr2L 19652577 19652596 chr2L 19674011 19674050 opus 4 21449 4.5 6.0 5.2 0.6 21473 chr2L 19652577 intron Lar + chr2L 19663314 intron Lar + chr2L 19674050 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-42 353 chr2L 19689058 19689090 chr2L 19689181 19689214 5 124 2.0 3.5 2.8 1.3 156 chr2L 19689058 intron Lar + chr2L 19689136 intron Lar + chr2L 19689214 intron Lar + chr2L_5_19685001 chr2L_19685001 RAL-42 354 chr2L 19697118 19697164 chr2L 19697230 19697276 4 112 2.0 2.0 2.0 1.3 158 chr2L 19697118 intron Lar + chr2L 19697197 intron Lar + chr2L 19697276 intron Lar + chr2L_4_19695001 chr2L_19695001 RAL-42 355 chr2L 19703535 19703559 chr2L 19712691 19712702 roo 4 9150 5.0 1.5 3.2 1.0 9167 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712702 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-42 356 chr2L 19712673 19712717 chr2L 19712777 19712810 7 97 0.5 2.0 1.2 3.2 137 chr2L 19712673 intron Lar + chr2L 19712742 intron Lar + chr2L 19712810 intron Lar + chr2L_7_19710001 chr2L_19710001 RAL-42 357 chr2L 19762787 19762838 chr2L 19763049 19763100 pogo 20 260 1.5 6.0 3.8 4.2 313 chr2L 19762787 exon fbp - chr2L 19762944 intron fbp - chr2L 19763100 intron fbp - chr2L_20_19760001 chr2L_19760001 RAL-42 358 chr2L 19773145 19773191 chr2L 19773252 19773298 10 107 8.0 4.5 6.2 1.4 153 chr2L 19773145 intergenic not near genes chr2L 19773222 intergenic not near genes chr2L 19773298 intergenic not near genes chr2L_10_19770001 chr2L_19770001 RAL-42 359 chr2L 19776649 19776659 chr2L 19776749 19776759 6 99 8.0 6.0 7.0 0.8 110 chr2L 19776649 3` UTR CdGAPr - chr2L 19776704 3` UTR CdGAPr - chr2L 19776759 3` UTR CdGAPr - chr2L_6_19775001 chr2L_19775001 RAL-42 360 chr2L 20000030 20000074 chr2L 20000139 20000183 5 106 1.0 1.0 1.0 2.5 153 chr2L 20000030 intron CG43861 - chr2L 20000106 intron CG43861 - chr2L 20000183 intron,3` UTR CG43861 -,CR44908 - chr2L_5_20000001 chr2L_20000001 RAL-42 361 chr2L 20005853 20005905 chr2L 20010949 20010990 flea 12 5095 3.5 5.0 4.2 2.3 5137 chr2L 20005853 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010990 intron CG43861 - chr2L_12_20005001 chr2L_20005001 RAL-42 362 chr2L 20022078 20022096 chr2L 20022211 20022228 4 133 5.5 3.0 4.2 0.8 150 chr2L 20022078 intergenic not near genes chr2L 20022153 intergenic not near genes chr2L 20022228 intergenic not near genes chr2L_4_20020001 chr2L_20020001 RAL-42 363 chr2L 20057033 20057072 chr2L 20057130 20057169 4 95 3.0 2.5 2.8 1.1 136 chr2L 20057033 intergenic not near genes chr2L 20057101 intergenic not near genes chr2L 20057169 intergenic not near genes chr2L_4_20055001 chr2L_20055001 RAL-42 364 chr2L 20122618 20122648 chr2L 20122728 20122759 7 110 2.0 3.5 2.8 1.8 141 chr2L 20122618 intergenic not near genes chr2L 20122688 intergenic not near genes chr2L 20122759 intergenic not near genes chr2L_7_20120001 chr2L_20120001 RAL-42 365 chr2L 20272104 20272140 chr2L 20282835 20282871 copia 16 10731 9.5 13.0 11.2 1.3 10767 chr2L 20272104 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282871 intergenic not near genes chr2L_16_20275001 chr2L_20275001 RAL-42 366 chr2L 20296494 20296540 chr2L 20296595 20296641 7 101 0.0 3.5 1.8 2.5 147 chr2L 20296494 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296641 intergenic CR43414 - chr2L_7_20295001 chr2L_20295001 RAL-42 367 chr2L 20298821 20298854 chr2L 20298924 20298957 8 100 3.0 6.5 4.8 1.4 136 chr2L 20298821 intergenic not near genes chr2L 20298889 intergenic not near genes chr2L 20298957 intergenic not near genes chr2L_8_20295001 chr2L_20295001 RAL-42 368 chr2L 20303166 20303183 chr2L 20310654 20310671 blood 6 7488 0.5 5.5 3.0 1.5 7505 chr2L 20303166 intergenic not near genes chr2L 20306918 intergenic not near genes chr2L 20310671 intergenic not near genes chr2L_6_20305001 chr2L_20305001 RAL-42 369 chr2L 20367542 20367569 chr2L 20367699 20367705 9 153 2.5 1.0 1.8 3.2 163 chr2L 20367542 intergenic not near genes chr2L 20367624 intergenic not near genes chr2L 20367705 intergenic not near genes chr2L_9_20365001 chr2L_20365001 RAL-42 370 chr2L 20372199 20372255 chr2L 20372469 20372516 pogo 10 268 0.0 8.0 4.0 2.0 317 chr2L 20372199 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372516 exon Ugt37a1 - chr2L_10_20370001 chr2L_20370001 RAL-42 371 chr2L 20372837 20372876 chr2L 20372935 20372969 6 94 1.5 0.5 1.0 3.0 132 chr2L 20372837 exon Ugt37a1 - chr2L 20372903 exon Ugt37a1 - chr2L 20372969 exon Ugt37a1 - chr2L_6_20370001 chr2L_20370001 RAL-42 372 chr2L 20498670 20498705 chr2L 20498789 20498824 13 119 5.0 8.0 6.5 1.7 154 chr2L 20498670 intergenic not near genes chr2L 20498747 intergenic not near genes chr2L 20498824 intergenic not near genes chr2L_13_20495001 chr2L_20495001 RAL-42 373 chr2L 20500401 20500438 chr2L 20500501 20500538 13 100 2.5 4.0 3.2 3.1 137 chr2L 20500401 intergenic not near genes chr2L 20500470 intergenic not near genes chr2L 20500538 intergenic not near genes chr2L_13_20500001 chr2L_20500001 RAL-42 374 chr2L 20568644 20568684 chr2L 20569054 20569093 X-element 11 408 4.0 4.5 4.2 2.1 449 chr2L 20568644 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569093 intron CR45347 + chr2L_11_20565001 chr2L_20565001 RAL-42 375 chr2L 20576198 20576214 chr2L 20583686 20583689 blood 4 7484 5.0 3.5 4.2 0.8 7491 chr2L 20576198 intergenic CR45347 + chr2L 20579944 intergenic not near genes chr2L 20583689 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-42 376 chr2L 20576217 20576245 chr2L 20583685 20583733 blood 6 7481 3.5 3.5 3.5 1.3 7516 chr2L 20576217 intergenic CR45347 + chr2L 20579975 intergenic not near genes chr2L 20583733 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-42 377 chr2L 20643322 20643336 chr2L 20643474 20643488 6 152 6.0 8.5 7.2 0.7 166 chr2L 20643322 intergenic phr6-4 -,CG17470 - chr2L 20643405 3` UTR phr6-4 - chr2L 20643488 3` UTR phr6-4 - chr2L_6_20640001 chr2L_20640001 RAL-42 378 chr2L 20674810 20674843 chr2L 20674915 20674941 6 104 8.0 1.0 4.5 1.1 131 chr2L 20674810 intron CG31678 - chr2L 20674876 intron CG31678 - chr2L 20674941 intron CG31678 - chr2L_6_20670001 chr2L_20670001 RAL-42 379 chr2L 20805400 20805443 chr2L 20805766 20805809 7 366 3.0 4.5 3.8 1.5 409 chr2L 20805400 intron CG9328 + chr2L 20805604 intron CG9328 + chr2L 20805809 intron CG9328 + chr2L_7_20805001 chr2L_20805001 RAL-42 380 chr2L 20835793 20835823 chr2L 20836530 20836560 Quasimodo 10 737 6.5 2.0 4.2 1.9 767 chr2L 20835793 5` UTR Oseg5 - chr2L 20836176 intergenic Oseg5 -,Spn38F - chr2L 20836560 intergenic Spn38F - chr2L_10_20835001 chr2L_20835001 RAL-42 381 chr2L 20976633 20976666 chr2L 20981464 20981501 X-element 5 4831 4.5 3.0 3.8 1.0 4868 chr2L 20976633 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981501 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-42 382 chr2L 20991036 20991050 chr2L 20991134 20991148 4 98 5.0 2.0 3.5 0.9 112 chr2L 20991036 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991148 intron CG42238 - chr2L_4_20990001 chr2L_20990001 RAL-42 383 chr2L 21001524 21001544 chr2L 21001608 21001643 4 94 4.5 2.0 3.2 1.0 119 chr2L 21001524 intron CG42238 - chr2L 21001584 intron CG42238 - chr2L 21001643 intron CG42238 - chr2L_4_21000001 chr2L_21000001 RAL-42 384 chr2L 21020281 21020305 chr2L 21023948 21024002 NOF 7 3691 7.0 3.0 5.0 1.2 3721 chr2L 21020281 intron CG42238 - chr2L 21022142 intron CG42238 - chr2L 21024002 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-42 385 chr2L 21041125 21041158 chr2L 21049406 21049434 Tirant 10 8277 4.0 3.0 3.5 2.2 8309 chr2L 21041125 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049434 intron CG42238 - chr2L_10_21045001 chr2L_21045001 RAL-42 386 chr2L 21074906 21074942 chr2L 21075017 21075051 7 111 5.0 1.0 3.0 1.8 145 chr2L 21074906 intergenic tadr + chr2L 21074978 intergenic tadr + chr2L 21075051 intergenic tadr + chr2L_7_21070001 chr2L_21070001 RAL-42 387 chr2L 21113671 21113716 chr2L 21113784 21113828 12 112 3.0 1.0 2.0 4.0 157 chr2L 21113671 intron Nhe2 + chr2L 21113750 intron Nhe2 + chr2L 21113828 intron Nhe2 + chr2L_12_21110001 chr2L_21110001 RAL-42 388 chr2L 21169822 21169874 chr2L 21169924 21169976 28 102 9.5 7.0 8.2 3.0 154 chr2L 21169822 intron Acon + chr2L 21169899 intron Acon + chr2L 21169976 intron Acon + chr2L_28_21165001 chr2L_21165001 RAL-42 389 chr2L 21199205 21199259 chr2L 21199302 21199356 12 96 3.0 4.0 3.5 2.7 151 chr2L 21199205 intergenic CG31624 -,Ret - chr2L 21199280 3` UTR CG31624 - chr2L 21199356 3` UTR CG31624 - chr2L_12_21195001 chr2L_21195001 RAL-42 390 chr2L 21218961 21219005 chr2L 21219255 21219299 13 294 3.0 4.0 3.5 2.9 338 chr2L 21218961 intron Atg18b - chr2L 21219130 intron Atg18b - chr2L 21219299 intron Atg18b - chr2L_13_21215001 chr2L_21215001 RAL-42 391 chr2L 21246491 21246513 chr2L 21246606 21246619 5 113 2.0 2.0 2.0 1.7 128 chr2L 21246491 intron Hr39 + chr2L 21246555 intron Hr39 + chr2L 21246619 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-42 392 chr2L 21278649 21278676 chr2L 21278745 21278772 11 96 12.5 6.5 9.5 1.0 123 chr2L 21278649 intron CG8671 + chr2L 21278710 intron CG8671 + chr2L 21278772 intron CG8671 + chr2L_11_21275001 chr2L_21275001 RAL-42 393 chr2L 21278695 21278699 chr2L 21278761 21278795 6 90 9.0 9.0 9.0 0.6 100 chr2L 21278695 intron CG8671 + chr2L 21278745 intron CG8671 + chr2L 21278795 intron CG8671 + chr2L_6_21275001 chr2L_21275001 RAL-42 394 chr2L 21286587 21286619 chr2L 21286686 21286718 13 99 3.0 4.0 3.5 2.9 131 chr2L 21286587 exon Mio - chr2L 21286652 intron Mio - chr2L 21286718 intron Mio - chr2L_13_21285001 chr2L_21285001 RAL-42 395 chr2L 21323405 21323434 chr2L 21323513 21323542 12 108 2.0 4.5 3.2 2.9 137 chr2L 21323405 intergenic not near genes chr2L 21323474 intergenic not near genes chr2L 21323542 intergenic not near genes chr2L_12_21320001 chr2L_21320001 RAL-42 396 chr2L 21333113 21333164 chr2L 21333230 21333281 7 117 3.0 0.0 1.5 2.8 168 chr2L 21333113 intron dimm + chr2L 21333197 intron dimm + chr2L 21333281 intron dimm + chr2L_7_21330001 chr2L_21330001 RAL-42 397 chr2L 21355594 21355636 chr2L 21355759 21355801 10 164 4.0 1.5 2.8 2.6 207 chr2L 21355594 exon Tsp39D + chr2L 21355698 intron Tsp39D + chr2L 21355801 intron Tsp39D + chr2L_10_21355001 chr2L_21355001 RAL-42 398 chr2L 21691806 21691844 chr2L 21698296 21698327 Burdock 5 6488 6.5 0.5 3.5 1.1 6521 chr2L 21691806 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698327 intron CG31619 + chr2L_5_21695001 chr2L_21695001 RAL-42 399 chr2L 21769940 21769974 chr2L 21770041 21770075 14 101 6.0 5.0 5.5 2.2 135 chr2L 21769940 intron CG31612 - chr2L 21770008 intron CG31612 - chr2L 21770075 intron CG31612 - chr2L_14_21770001 chr2L_21770001 RAL-42 400 chr2L 21825224 21825241 chr2L 21825308 21825355 6 109 0.0 1.0 0.5 4.0 131 chr2L 21825224 intergenic not near genes chr2L 21825290 intergenic not near genes chr2L 21825355 intergenic not near genes chr2L_6_21825001 chr2L_21825001 RAL-42 401 chr2L 22037353 22037396 chr2L 22037675 22037718 INE-1 14 322 5.5 3.5 4.5 2.5 365 chr2L 22037353 intergenic not near genes chr2L 22037536 intergenic CG41434 + chr2L 22037718 intergenic CG41434 + chr2L_14_22035001 chr2L_22035001 RAL-42 402 chr2L 22776401 22776439 chr2L 22778210 22778248 S-element 11 1809 2.5 3.5 3.0 2.8 1847 chr2L 22776401 intergenic not near genes chr2L 22777324 intergenic not near genes chr2L 22778248 intergenic not near genes chr2L_11_22775001 chr2L_22775001 RAL-42 403 chr2L 22941231 22941272 chr2L 22941333 22941374 10 99 2.5 2.0 2.2 3.1 143 chr2L 22941231 3` UTR lt + chr2L 22941302 3` UTR lt + chr2L 22941374 3` UTR lt + chr2L_10_22940001 chr2L_22940001 RAL-42 404 chr2R 529323 529347 chr2R 537968 537992 Max-element 4 8644 1.5 1.5 1.5 1.6 8669 chr2R 529323 intron CG40378 + chr2R 533658 intron CG40378 + chr2R 537992 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-42 405 chr2R 1516589 1516603 chr2R 1521337 1521350 1731 9 4748 20.0 17.0 18.5 0.5 4761 chr2R 1516589 exon Maf1 - chr2R 1518970 intron Maf1 - chr2R 1521350 5` UTR Maf1 - chr2R_9_1515001 chr2R_1515001 RAL-42 406 chr2R 2498972 2499012 chr2R 2508134 2508179 roo 8 9166 1.0 1.5 1.2 3.6 9207 chr2R 2498972 intron MFS17 - chr2R 2503576 intron MFS17 - chr2R 2508179 intron MFS17 - chr2R_8_2500001 chr2R_2500001 RAL-42 407 chr2R 3532600 3532641 chr2R 3536063 3536104 Doc 9 3463 4.0 1.5 2.8 2.4 3504 chr2R 3532600 intergenic not near genes chr2R 3534352 intergenic not near genes chr2R 3536104 intergenic not near genes chr2R_9_3530001 chr2R_3530001 RAL-42 408 chr2R 4604540 4604576 chr2R 4604634 4604668 7 97 1.0 2.5 1.8 2.5 128 chr2R 4604540 intron p120ctn + chr2R 4604604 intron p120ctn + chr2R 4604668 intron p120ctn + chr2R_7_4600001 chr2R_4600001 RAL-42 409 chr2R 4634158 4634168 chr2R 4634256 4634267 4 99 3.0 2.0 2.5 1.1 109 chr2R 4634158 intergenic not near genes chr2R 4634212 intergenic not near genes chr2R 4634267 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-42 410 chr2R 4750320 4750373 chr2R 4751497 4751550 1360 12 1175 6.0 3.0 4.5 2.2 1230 chr2R 4750320 intron conu + chr2R 4750935 intron conu + chr2R 4751550 intron conu + chr2R_12_4750001 chr2R_4750001 RAL-42 411 chr2R 4821196 4821244 chr2R 4821302 4821350 15 105 4.5 3.0 3.8 3.1 154 chr2R 4821196 intron CG17528 - chr2R 4821273 intron CG17528 - chr2R 4821350 intron CG17528 - chr2R_15_4820001 chr2R_4820001 RAL-42 412 chr2R 5008982 5009024 chr2R 5009308 5009336 7 317 4.5 1.5 3.0 1.8 354 chr2R 5008982 intron Ir41a + chr2R 5009159 intron Ir41a + chr2R 5009336 intron Ir41a + chr2R_7_5005001 chr2R_5005001 RAL-42 413 chr2R 5019261 5019307 chr2R 5019367 5019413 12 106 2.5 3.0 2.8 3.2 152 chr2R 5019261 intron Ir41a + chr2R 5019337 intron Ir41a + chr2R 5019413 intron Ir41a + chr2R_12_5015001 chr2R_5015001 RAL-42 414 chr2R 5075962 5075971 chr2R 5076104 5076120 4 144 18.5 20.0 19.2 0.2 158 chr2R 5075962 intergenic not near genes chr2R 5076041 intergenic not near genes chr2R 5076120 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-42 415 chr2R 5080796 5080816 chr2R 5080907 5080922 10 110 2.0 9.5 5.8 1.5 126 chr2R 5080796 intergenic not near genes chr2R 5080859 intergenic not near genes chr2R 5080922 intergenic not near genes chr2R_10_5080001 chr2R_5080001 RAL-42 416 chr2R 5192700 5192730 chr2R 5192797 5192827 11 97 6.5 9.5 8.0 1.2 127 chr2R 5192700 intron Nipped-A - chr2R 5192764 intron Nipped-A - chr2R 5192827 intron Nipped-A - chr2R_11_5190001 chr2R_5190001 RAL-42 417 chr2R 5303481 5303520 chr2R 5303588 5303628 8 108 2.5 3.5 3.0 2.0 147 chr2R 5303481 intergenic not near genes chr2R 5303554 intergenic not near genes chr2R 5303628 intergenic not near genes chr2R_8_5300001 chr2R_5300001 RAL-42 418 chr2R 5363489 5363506 chr2R 5363587 5363603 4 98 4.5 4.5 4.5 0.7 114 chr2R 5363489 5` UTR CR42646 + chr2R 5363546 intron CR42646 + chr2R 5363603 intron CR42646 + chr2R_4_5360001 chr2R_5360001 RAL-42 419 chr2R 5417976 5418001 chr2R 5420628 5420653 Burdock 5 2652 3.0 1.0 2.0 1.7 2677 chr2R 5417976 intron laccase2 + chr2R 5419314 intron laccase2 + chr2R 5420653 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-42 420 chr2R 5790443 5790495 chr2R 5790548 5790600 11 105 2.5 5.0 3.8 2.3 157 chr2R 5790443 intergenic not near genes chr2R 5790522 intergenic not near genes chr2R 5790600 intergenic not near genes chr2R_11_5790001 chr2R_5790001 RAL-42 421 chr2R 5833033 5833083 chr2R 5833132 5833182 5 89 2.5 1.5 2.0 1.7 149 chr2R 5833033 intron dpr12 + chr2R 5833108 intron dpr12 + chr2R 5833182 intron dpr12 + chr2R_5_5830001 chr2R_5830001 RAL-42 422 chr2R 5861299 5861317 chr2R 5861409 5861458 6 128 1.5 4.0 2.8 1.6 159 chr2R 5861299 intergenic dpr12 + chr2R 5861378 intergenic not near genes chr2R 5861458 intergenic not near genes chr2R_6_5860001 chr2R_5860001 RAL-42 423 chr2R 5869261 5869304 chr2R 5874357 5874394 flea 8 5092 7.5 4.0 5.8 1.2 5133 chr2R 5869261 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874394 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-42 424 chr2R 5878914 5878954 chr2R 5879004 5879054 11 97 2.0 2.5 2.2 3.4 140 chr2R 5878914 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879054 intergenic CG44438 - chr2R_11_5875001 chr2R_5875001 RAL-42 425 chr2R 5896990 5897031 chr2R 5897096 5897137 14 106 4.0 8.0 6.0 2.0 147 chr2R 5896990 intron CG43366 + chr2R 5897064 intron CG43366 + chr2R 5897137 intron CG43366 + chr2R_14_5895001 chr2R_5895001 RAL-42 426 chr2R 5902141 5902169 chr2R 5909718 5909745 17.6 11 7578 6.5 4.0 5.2 1.8 7604 chr2R 5902141 intron CG43366 + chr2R 5905943 intron CG43366 + chr2R 5909745 intron CG43366 + chr2R_11_5905001 chr2R_5905001 RAL-42 427 chr2R 5933784 5933826 chr2R 5933881 5933922 10 97 3.5 6.5 5.0 1.7 138 chr2R 5933784 intergenic not near genes chr2R 5933853 intergenic not near genes chr2R 5933922 intergenic not near genes chr2R_10_5930001 chr2R_5930001 RAL-42 428 chr2R 5945782 5945833 chr2R 5945895 5945946 7 113 0.5 2.5 1.5 2.8 164 chr2R 5945782 intergenic not near genes chr2R 5945864 intergenic not near genes chr2R 5945946 intergenic not near genes chr2R_7_5945001 chr2R_5945001 RAL-42 429 chr2R 6033426 6033476 chr2R 6033531 6033581 11 101 3.5 3.5 3.5 2.4 155 chr2R 6033426 intron SCAP - chr2R 6033504 intron SCAP - chr2R 6033581 intron SCAP - chr2R_11_6030001 chr2R_6030001 RAL-42 430 chr2R 6065731 6065779 chr2R 6065863 6065903 7 127 5.5 2.0 3.8 1.5 172 chr2R 6065731 intron CCHa2-R + chr2R 6065817 intron CCHa2-R + chr2R 6065903 exon CCHa2-R + chr2R_7_6065001 chr2R_6065001 RAL-42 431 chr2R 6088356 6088388 chr2R 6088469 6088501 8 112 4.0 2.0 3.0 2.0 145 chr2R 6088356 intergenic not near genes chr2R 6088428 intergenic not near genes chr2R 6088501 intergenic not near genes chr2R_8_6085001 chr2R_6085001 RAL-42 432 chr2R 6173530 6173556 chr2R 6173627 6173653 7 97 6.0 1.0 3.5 1.6 123 chr2R 6173530 intergenic Cyp6w1 + chr2R 6173592 intergenic Cyp6w1 + chr2R 6173653 intergenic Cyp6w1 + chr2R_7_6170001 chr2R_6170001 RAL-42 433 chr2R 6177934 6177958 chr2R 6178132 6178156 4 198 5.5 3.5 4.5 0.7 222 chr2R 6177934 intergenic not near genes chr2R 6178045 intergenic not near genes chr2R 6178156 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-42 434 chr2R 6247801 6247838 chr2R 6247899 6247936 4 96 3.0 6.0 4.5 0.7 135 chr2R 6247801 intron Pld + chr2R 6247868 intron Pld + chr2R 6247936 intron Pld + chr2R_4_6245001 chr2R_6245001 RAL-42 435 chr2R 6494523 6494547 chr2R 6499304 6499329 F-element 7 4781 2.5 4.0 3.2 1.7 4806 chr2R 6494523 intergenic not near genes chr2R 6496926 intergenic not near genes chr2R 6499329 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-42 436 chr2R 6518076 6518108 chr2R 6518171 6518213 8 102 1.0 2.5 1.8 2.9 137 chr2R 6518076 intron jing + chr2R 6518144 intron jing + chr2R 6518213 intron jing + chr2R_8_6515001 chr2R_6515001 RAL-42 437 chr2R 6579760 6579796 chr2R 6584866 6584902 flea 11 5106 7.0 10.5 8.8 1.1 5142 chr2R 6579760 intron jing + chr2R 6582331 intron jing + chr2R 6584902 intron jing + chr2R_11_6580001 chr2R_6580001 RAL-42 438 chr2R 6597865 6597895 chr2R 6597960 6598003 5 101 4.5 4.5 4.5 0.9 138 chr2R 6597865 intron jing + chr2R 6597934 intron jing + chr2R 6598003 intron jing + chr2R_5_6595001 chr2R_6595001 RAL-42 439 chr2R 6607921 6607950 chr2R 6608042 6608061 10 121 3.5 6.5 5.0 1.7 140 chr2R 6607921 intron jing + chr2R 6607991 intron jing + chr2R 6608061 intron jing + chr2R_10_6605001 chr2R_6605001 RAL-42 440 chr2R 6659634 6659671 chr2R 6660152 6660203 19 522 31.0 39.0 35.0 0.5 569 chr2R 6659634 exon sced + chr2R 6659918 exon sced + chr2R 6660203 3` UTR sced + chr2R_19_6655001 chr2R_6655001 RAL-42 441 chr2R 6696590 6696624 chr2R 6696691 6696727 6 100 7.0 1.0 4.0 1.2 137 chr2R 6696590 5` UTR Mob4 - chr2R 6696658 5` UTR Mob4 - chr2R 6696727 intergenic Rab2 +,Mob4 - chr2R_6_6695001 chr2R_6695001 RAL-42 442 chr2R 6699573 6699620 chr2R 6699678 6699725 16 105 2.0 3.0 2.5 4.6 152 chr2R 6699573 intergenic Rab2 + chr2R 6699649 intergenic Rab2 + chr2R 6699725 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_16_6695001 chr2R_6695001 RAL-42 443 chr2R 6738844 6738877 chr2R 6738935 6738979 14 101 1.0 3.5 2.2 4.4 135 chr2R 6738844 intron l(2)01289 - chr2R 6738912 intron l(2)01289 - chr2R 6738979 intron l(2)01289 - chr2R_14_6735001 chr2R_6735001 RAL-42 444 chr2R 6759360 6759367 chr2R 6759441 6759463 4 86 5.5 11.5 8.5 0.4 103 chr2R 6759360 intergenic Epac -,CG9436 - chr2R 6759412 intergenic Epac - chr2R 6759463 intergenic Epac - chr2R_4_6755001 chr2R_6755001 RAL-42 445 chr2R 6769527 6769547 chr2R 6769912 6769956 7 404 2.0 8.5 5.2 1.1 429 chr2R 6769527 intron Epac - chr2R 6769742 intron Epac - chr2R 6769956 intron Epac - chr2R_7_6765001 chr2R_6765001 RAL-42 446 chr2R 6846294 6846324 chr2R 6846391 6846421 9 96 7.0 6.0 6.5 1.2 127 chr2R 6846294 intergenic not near genes chr2R 6846358 intergenic not near genes chr2R 6846421 intergenic not near genes chr2R_9_6845001 chr2R_6845001 RAL-42 447 chr2R 6952149 6952185 chr2R 6959749 6959785 opus 15 7600 1.5 4.0 2.8 3.9 7636 chr2R 6952149 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955967 intron,intron mim -,CheB42c - chr2R 6959785 intron,intron mim -,CheB42c - chr2R_15_6955001 chr2R_6955001 RAL-42 448 chr2R 6964269 6964316 chr2R 6964366 6964413 8 96 1.5 3.5 2.5 2.3 144 chr2R 6964269 intron,intron mim -,CheB42c - chr2R 6964341 intron,intron mim -,CheB42c - chr2R 6964413 intron,intron mim -,CheB42c - chr2R_8_6960001 chr2R_6960001 RAL-42 449 chr2R 7113926 7113962 chr2R 7114107 7114143 11 181 5.0 3.5 4.2 2.1 217 chr2R 7113926 intron esn + chr2R 7114034 intron esn + chr2R 7114143 intron esn + chr2R_11_7110001 chr2R_7110001 RAL-42 450 chr2R 7196554 7196593 chr2R 7201344 7201388 F-element 23 4795 8.5 10.5 9.5 2.2 4834 chr2R 7196554 intron pk + chr2R 7198971 intron pk + chr2R 7201388 intron pk + chr2R_23_7195001 chr2R_7195001 RAL-42 451 chr2R 7306546 7306592 chr2R 7306644 7306690 13 98 9.5 4.0 6.8 1.7 144 chr2R 7306546 intergenic not near genes chr2R 7306618 intergenic not near genes chr2R 7306690 intergenic not near genes chr2R_13_7305001 chr2R_7305001 RAL-42 452 chr2R 7353372 7353402 chr2R 7353498 7353528 6 126 5.0 2.0 3.5 1.3 156 chr2R 7353372 intron Dscam1 - chr2R 7353450 intron Dscam1 - chr2R 7353528 intron Dscam1 - chr2R_6_7350001 chr2R_7350001 RAL-42 453 chr2R 7417883 7418167 chr2R 7417989 7418265 18 101 6.0 4.0 5.0 3.0 382 chr2R 7417883 intergenic not near genes chr2R 7418074 intergenic not near genes chr2R 7418265 intergenic not near genes chr2R_18_7415001 chr2R_7415001 RAL-42 454 chr2R 7434878 7434903 chr2R 7439199 7439224 Juan 7 4321 15.0 10.5 12.8 0.5 4346 chr2R 7434878 intergenic so + chr2R 7437051 intergenic not near genes chr2R 7439224 intergenic not near genes chr2R_7_7435001 chr2R_7435001 RAL-42 455 chr2R 7459261 7459277 chr2R 7459369 7459385 5 108 13.5 4.0 8.8 0.5 124 chr2R 7459261 intergenic Inos -,CG11141 - chr2R 7459323 intergenic CG11141 -,Inos - chr2R 7459385 intergenic CG11141 - chr2R_5_7455001 chr2R_7455001 RAL-42 456 chr2R 7608388 7608434 chr2R 7613611 7613657 I-element 17 5221 4.5 9.0 6.8 2.2 5269 chr2R 7608388 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613657 intron CG1358 - chr2R_17_7610001 chr2R_7610001 RAL-42 457 chr2R 7623790 7623844 chr2R 7623997 7624051 18 206 3.0 5.0 4.0 3.6 261 chr2R 7623790 intron CG43340 + chr2R 7623920 intron CG43340 + chr2R 7624051 intron CG43340 + chr2R_18_7620001 chr2R_7620001 RAL-42 458 chr2R 7691994 7692037 chr2R 7692095 7692138 7 101 1.5 2.5 2.0 2.3 144 chr2R 7691994 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692138 intron CG1399 - chr2R_7_7690001 chr2R_7690001 RAL-42 459 chr2R 7724579 7724629 chr2R 7725286 7725336 13 707 5.5 3.0 4.2 2.5 757 chr2R 7724579 intron CG18812 - chr2R 7724958 intron CG18812 - chr2R 7725336 intron CG18812 - chr2R_13_7720001 chr2R_7720001 RAL-42 460 chr2R 7730073 7730116 chr2R 7730172 7730216 11 97 1.5 3.0 2.2 3.4 143 chr2R 7730073 intron CG18812 - chr2R 7730144 intron CG18812 - chr2R 7730216 intron CG18812 - chr2R_11_7730001 chr2R_7730001 RAL-42 461 chr2R 7762618 7762633 chr2R 7762864 7762902 5 257 5.5 6.0 5.8 0.7 284 chr2R 7762618 intron,intron CG30497 -,CG45093 - chr2R 7762760 intron,intron CG30497 -,CG45093 - chr2R 7762902 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-42 462 chr2R 7815655 7815698 chr2R 7822144 7822187 Burdock 12 6489 5.0 5.0 5.0 2.0 6532 chr2R 7815655 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822187 3` UTR cathD - chr2R_12_7815001 chr2R_7815001 RAL-42 463 chr2R 7869173 7869204 chr2R 7873974 7874005 Doc 5 4803 4.0 2.5 3.2 1.2 4832 chr2R 7869173 intron Dgk - chr2R 7871589 intron Dgk - chr2R 7874005 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-42 464 chr2R 7952146 7952158 chr2R 7952435 7952447 4 289 1.5 5.5 3.5 0.9 301 chr2R 7952146 intron CG14764 - chr2R 7952296 intron CG14764 - chr2R 7952447 intron CG14764 - chr2R_4_7950001 chr2R_7950001 RAL-42 465 chr2R 8014404 8014451 chr2R 8014509 8014556 13 105 4.5 3.5 4.0 2.6 152 chr2R 8014404 intergenic not near genes chr2R 8014480 intergenic not near genes chr2R 8014556 intergenic not near genes chr2R_13_8010001 chr2R_8010001 RAL-42 466 chr2R 8089245 8089285 chr2R 8089344 8089391 17 105 4.5 2.5 3.5 3.8 146 chr2R 8089245 3` UTR sut2 + chr2R 8089318 intergenic sut2 +,sut3 + chr2R 8089391 intergenic sut3 +,sut2 + chr2R_17_8085001 chr2R_8085001 RAL-42 467 chr2R 8160916 8160945 chr2R 8161026 8161055 1360 6 110 3.0 9.5 6.2 0.8 139 chr2R 8160916 exon CG8708 - chr2R 8160986 intron CG8708 - chr2R 8161055 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-42 468 chr2R 8218511 8218520 chr2R 8218634 8218643 8 123 15.0 15.0 15.0 0.5 132 chr2R 8218511 intron LRP1 + chr2R 8218577 intron LRP1 + chr2R 8218643 intron LRP1 + chr2R_8_8215001 chr2R_8215001 RAL-42 469 chr2R 8330858 8330884 chr2R 8331349 8331390 roo 6 503 3.0 2.0 2.5 1.7 532 chr2R 8330858 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331390 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-42 470 chr2R 8468846 8468884 chr2R 8468981 8469013 6 131 2.0 4.0 3.0 1.5 167 chr2R 8468846 3` UTR Mal-A7 - chr2R 8468930 3` UTR Mal-A7 - chr2R 8469013 3` UTR Mal-A7 - chr2R_6_8465001 chr2R_8465001 RAL-42 471 chr2R 8483942 8483992 chr2R 8484038 8484062 20 90 2.0 7.0 4.5 3.6 120 chr2R 8483942 intron mtt - chr2R 8484002 intron mtt - chr2R 8484062 intron mtt - chr2R_20_8480001 chr2R_8480001 RAL-42 472 chr2R 8489732 8489752 chr2R 8489831 8489851 4 99 1.5 7.5 4.5 0.7 119 chr2R 8489732 intron mtt - chr2R 8489792 intron mtt - chr2R 8489851 intron mtt - chr2R_4_8485001 chr2R_8485001 RAL-42 473 chr2R 8508753 8508776 chr2R 8508852 8508852 5 92 3.0 4.5 3.8 1.0 99 chr2R 8508753 intron mtt - chr2R 8508802 intron mtt - chr2R 8508852 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-42 474 chr2R 8525090 8525111 chr2R 8525186 8525208 4 97 0.0 8.5 4.2 0.8 118 chr2R 8525090 intron mtt - chr2R 8525149 intron mtt - chr2R 8525208 intron mtt - chr2R_4_8525001 chr2R_8525001 RAL-42 475 chr2R 8536192 8536229 chr2R 8536444 8536481 7 251 4.0 3.5 3.8 1.5 289 chr2R 8536192 intergenic not near genes chr2R 8536336 intergenic not near genes chr2R 8536481 intergenic not near genes chr2R_7_8535001 chr2R_8535001 RAL-42 476 chr2R 8566048 8566067 chr2R 8567014 8567033 1360 4 966 4.0 3.5 3.8 0.8 985 chr2R 8566048 5` UTR Cyp6a14 - chr2R 8566540 5` UTR Cyp6a14 - chr2R 8567033 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-42 477 chr2R 8568728 8568775 chr2R 8568831 8568878 10 103 2.0 5.5 3.8 2.1 150 chr2R 8568728 intergenic not near genes chr2R 8568803 intergenic not near genes chr2R 8568878 intergenic not near genes chr2R_10_8565001 chr2R_8565001 RAL-42 478 chr2R 8615755 8615802 chr2R 8615888 8615935 11 131 4.5 5.5 5.0 1.8 180 chr2R 8615755 intron Cirl + chr2R 8615845 intron Cirl + chr2R 8615935 5` UTR Cirl + chr2R_11_8615001 chr2R_8615001 RAL-42 479 chr2R 8722745 8722783 chr2R 8723006 8723017 pogo 6 254 6.0 2.0 4.0 1.2 272 chr2R 8722745 intron CG14767 - chr2R 8722881 intron CG14767 - chr2R 8723017 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-42 480 chr2R 8777892 8777941 chr2R 8784102 8784152 diver 14 6209 4.5 5.0 4.8 2.4 6260 chr2R 8777892 intergenic not near genes chr2R 8781022 intergenic not near genes chr2R 8784152 intergenic not near genes chr2R_14_8780001 chr2R_8780001 RAL-42 481 chr2R 8833405 8833453 chr2R 8833507 8833544 17 99 3.5 0.5 2.0 5.7 139 chr2R 8833405 intron sns + chr2R 8833474 intron sns + chr2R 8833544 intron sns + chr2R_17_8830001 chr2R_8830001 RAL-42 482 chr2R 8907216 8907270 chr2R 8907485 8907539 19 268 4.5 3.5 4.0 3.8 323 chr2R 8907216 intergenic CG8258 -,CG30349 + chr2R 8907378 intergenic CG30349 +,CG8258 - chr2R 8907539 5` UTR CG30349 + chr2R_19_8905001 chr2R_8905001 RAL-42 483 chr2R 8976180 8976225 chr2R 8976289 8976334 12 109 4.0 7.5 5.8 1.8 154 chr2R 8976180 intron CG8213 - chr2R 8976257 intron CG8213 - chr2R 8976334 intron CG8213 - chr2R_12_8975001 chr2R_8975001 RAL-42 484 chr2R 9052711 9052732 chr2R 9052811 9052833 5 101 1.0 5.5 3.2 1.2 122 chr2R 9052711 intron CG13743 - chr2R 9052772 intron CG13743 - chr2R 9052833 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-42 485 chr2R 9075883 9075935 chr2R 9076038 9076090 15 150 3.0 4.0 3.5 3.3 207 chr2R 9075883 exon ana + chr2R 9075986 intron ana + chr2R 9076090 intron ana + chr2R_15_9075001 chr2R_9075001 RAL-42 486 chr2R 9091795 9091843 chr2R 9091919 9091968 9 124 7.0 3.0 5.0 1.5 173 chr2R 9091795 intron CG8080 - chr2R 9091882 intron CG8080 - chr2R 9091968 intron CG8080 - chr2R_9_9090001 chr2R_9090001 RAL-42 487 chr2R 9230203 9230237 chr2R 9230303 9230307 9 96 6.5 3.0 4.8 1.6 104 chr2R 9230203 intron hig - chr2R 9230255 intron hig - chr2R 9230307 intron hig - chr2R_9_9230001 chr2R_9230001 RAL-42 488 chr2R 9368110 9368144 chr2R 9368206 9368210 6 87 5.5 0.0 2.8 1.6 100 chr2R 9368110 intron CG13954 - chr2R 9368160 intron CG13954 - chr2R 9368210 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-42 489 chr2R 9480062 9480100 chr2R 9490613 9490651 roo 11 10551 4.5 8.5 6.5 1.5 10589 chr2R 9480062 intergenic not near genes chr2R 9485356 intergenic not near genes chr2R 9490651 intergenic not near genes chr2R_11_9485001 chr2R_9485001 RAL-42 490 chr2R 9510652 9510694 chr2R 9510788 9510830 7 136 1.5 2.5 2.0 2.3 178 chr2R 9510652 exon brp + chr2R 9510741 intron brp + chr2R 9510830 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-42 491 chr2R 9529836 9529879 chr2R 9529936 9529986 13 105 6.5 5.5 6.0 1.9 150 chr2R 9529836 intron brp + chr2R 9529911 intron brp + chr2R 9529986 intron brp + chr2R_13_9525001 chr2R_9525001 RAL-42 492 chr2R 9561827 9561847 chr2R 9561935 9561955 7 108 0.0 0.0 0.0 7.0 128 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561891 3` UTR,intron CR45281 -,CG1809 + chr2R 9561955 3` UTR,intron CR45281 -,CG1809 + chr2R_7_9560001 chr2R_9560001 RAL-42 493 chr2R 9653246 9653287 chr2R 9653349 9653391 5 104 1.5 4.5 3.0 1.2 145 chr2R 9653246 intron Mmp2 - chr2R 9653318 intron Mmp2 - chr2R 9653391 intron Mmp2 - chr2R_5_9650001 chr2R_9650001 RAL-42 494 chr2R 9726600 9726608 chr2R 9734171 9734179 17.6 6 7571 5.5 8.5 7.0 0.8 7579 chr2R 9726600 intron sqa - chr2R 9730390 intron sqa - chr2R 9734179 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-42 495 chr2R 9726610 9726639 chr2R 9734167 9734210 17.6 8 7569 3.0 8.0 5.5 1.2 7600 chr2R 9726610 intron sqa - chr2R 9730410 intron sqa - chr2R 9734210 intron sqa - chr2R_8_9730001 chr2R_9730001 RAL-42 496 chr2R 9770050 9770095 chr2R 9770163 9770209 11 114 2.0 8.5 5.2 1.8 159 chr2R 9770050 intron CG1688 - chr2R 9770130 intron CG1688 - chr2R 9770209 intron CG1688 - chr2R_11_9770001 chr2R_9770001 RAL-42 497 chr2R 9966965 9966990 chr2R 9967063 9967111 6 117 7.0 4.5 5.8 0.9 146 chr2R 9966965 intergenic CG12133 + chr2R 9967038 intergenic CG12133 + chr2R 9967111 intergenic CG12133 + chr2R_6_9965001 chr2R_9965001 RAL-42 498 chr2R 9990170 9990206 chr2R 9990277 9990313 14 106 6.0 5.0 5.5 2.2 143 chr2R 9990170 intron TER94 + chr2R 9990242 intron TER94 + chr2R 9990313 intron TER94 + chr2R_14_9990001 chr2R_9990001 RAL-42 499 chr2R 10017635 10017679 chr2R 10017733 10017778 6 99 1.0 2.0 1.5 2.4 143 chr2R 10017635 intron Pka-R2 - chr2R 10017706 intron Pka-R2 - chr2R 10017778 intron Pka-R2 - chr2R_6_10015001 chr2R_10015001 RAL-42 500 chr2R 10132173 10132218 chr2R 10132269 10132318 10 100 1.5 4.0 2.8 2.6 145 chr2R 10132173 intron gem + chr2R 10132246 intron gem + chr2R 10132318 exon gem + chr2R_10_10130001 chr2R_10130001 RAL-42 501 chr2R 10168336 10168361 chr2R 10168433 10168456 8 94 1.0 2.5 1.8 2.9 120 chr2R 10168336 intron KCNQ - chr2R 10168396 intron KCNQ - chr2R 10168456 intron KCNQ - chr2R_8_10165001 chr2R_10165001 RAL-42 502 chr2R 10172623 10172650 chr2R 10172755 10172782 4 132 5.5 0.0 2.8 1.1 159 chr2R 10172623 intron KCNQ - chr2R 10172702 intron KCNQ - chr2R 10172782 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-42 503 chr2R 10176863 10176913 chr2R 10186050 10186100 roo 10 9187 3.0 4.5 3.8 2.1 9237 chr2R 10176863 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186100 intron KCNQ - chr2R_10_10180001 chr2R_10180001 RAL-42 504 chr2R 10189185 10189235 chr2R 10189283 10189333 15 97 4.0 2.5 3.2 3.6 148 chr2R 10189185 intron KCNQ - chr2R 10189259 intron KCNQ - chr2R 10189333 intron KCNQ - chr2R_15_10185001 chr2R_10185001 RAL-42 505 chr2R 10216169 10216216 chr2R 10216267 10216313 6 94 3.0 1.0 2.0 2.0 144 chr2R 10216169 intron,intron CG12912 -,Hr46 - chr2R 10216241 intron,intron CG12912 -,Hr46 - chr2R 10216313 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-42 506 chr2R 10225713 10225750 chr2R 10225815 10225852 16 102 4.0 7.0 5.5 2.5 139 chr2R 10225713 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225852 intron,intron CG12912 -,Hr46 - chr2R_16_10225001 chr2R_10225001 RAL-42 507 chr2R 10257138 10257190 chr2R 10257249 10257301 14 108 7.5 2.5 5.0 2.3 163 chr2R 10257138 intron CG12911 + chr2R 10257220 intron CG12911 + chr2R 10257301 intron CG12911 + chr2R_14_10255001 chr2R_10255001 RAL-42 508 chr2R 10286656 10286684 chr2R 10286753 10286781 12 97 3.0 5.5 4.2 2.3 125 chr2R 10286656 intron CAP + chr2R 10286718 intron CAP + chr2R 10286781 intron CAP + chr2R_12_10285001 chr2R_10285001 RAL-42 509 chr2R 10318495 10318540 chr2R 10318601 10318646 20 106 0.5 5.0 2.8 5.3 151 chr2R 10318495 intron Ndg + chr2R 10318570 intron Ndg + chr2R 10318646 intron Ndg + chr2R_20_10315001 chr2R_10315001 RAL-42 510 chr2R 10322058 10322080 chr2R 10322160 10322182 6 102 2.5 3.5 3.0 1.5 124 chr2R 10322058 3` UTR Ndg + chr2R 10322120 intergenic Ndg + chr2R 10322182 intergenic Ndg + chr2R_6_10320001 chr2R_10320001 RAL-42 511 chr2R 10352655 10352694 chr2R 10352752 10352784 8 93 3.0 3.5 3.2 1.9 129 chr2R 10352655 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352784 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-42 512 chr2R 10411787 10411835 chr2R 10411889 10411937 8 98 2.0 3.0 2.5 2.3 150 chr2R 10411787 intron CG42732 - chr2R 10411862 intron CG42732 - chr2R 10411937 intron CG42732 - chr2R_8_10410001 chr2R_10410001 RAL-42 513 chr2R 10454081 10454128 chr2R 10454178 10454225 8 94 2.0 7.0 4.5 1.5 144 chr2R 10454081 intron,intron Galphao +,Cyp49a1 - chr2R 10454153 intron,intron Galphao +,Cyp49a1 - chr2R 10454225 intron,intron Galphao +,Cyp49a1 - chr2R_8_10450001 chr2R_10450001 RAL-42 514 chr2R 10469016 10469055 chr2R 10469148 10469201 13 144 1.5 3.0 2.2 4.1 185 chr2R 10469016 intron CG11777 + chr2R 10469108 intron CG11777 + chr2R 10469201 exon CG11777 + chr2R_13_10465001 chr2R_10465001 RAL-42 515 chr2R 10622337 10622355 chr2R 10637122 10637140 mdg1 6 14784 16.0 8.0 12.0 0.5 14803 chr2R 10622337 intron CG11883 + chr2R 10629738 intron CG11883 + chr2R 10637140 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-42 516 chr2R 10644043 10644078 chr2R 10644141 10644176 7 98 6.5 0.0 3.2 1.7 133 chr2R 10644043 intron Git - chr2R 10644110 intron Git - chr2R 10644176 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-42 517 chr2R 10683962 10683983 chr2R 10684120 10684140 6 158 1.0 1.5 1.2 2.7 178 chr2R 10683962 intron stan + chr2R 10684051 intron stan + chr2R 10684140 intron stan + chr2R_6_10680001 chr2R_10680001 RAL-42 518 chr2R 10768257 10768293 chr2R 10768383 10768419 4 126 1.5 1.0 1.2 1.8 162 chr2R 10768257 intron CG33144 - chr2R 10768338 intron CG33144 - chr2R 10768419 intron CG33144 - chr2R_4_10765001 chr2R_10765001 RAL-42 519 chr2R 10790123 10790172 chr2R 10790231 10790276 5 107 4.0 3.0 3.5 1.1 153 chr2R 10790123 intron CG33144 - chr2R 10790200 intron CG33144 - chr2R 10790276 intron CG33144 - chr2R_5_10790001 chr2R_10790001 RAL-42 520 chr2R 10794894 10794937 chr2R 10794992 10795035 11 98 1.5 2.0 1.8 3.9 141 chr2R 10794894 intron CG33144 - chr2R 10794964 intron CG33144 - chr2R 10795035 intron CG33144 - chr2R_11_10790001 chr2R_10790001 RAL-42 521 chr2R 10827318 10827361 chr2R 10827426 10827469 9 106 3.5 5.5 4.5 1.6 151 chr2R 10827318 exon CG12325 + chr2R 10827394 3` UTR CG12325 + chr2R 10827469 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_9_10825001 chr2R_10825001 RAL-42 522 chr2R 10924333 10924346 chr2R 10924445 10924447 4 109 4.0 3.5 3.8 0.8 114 chr2R 10924333 intergenic not near genes chr2R 10924390 intergenic not near genes chr2R 10924447 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-42 523 chr2R 10959076 10959107 chr2R 10959170 10959206 9 96 2.0 2.0 2.0 3.0 130 chr2R 10959076 intergenic not near genes chr2R 10959141 intergenic not near genes chr2R 10959206 intergenic not near genes chr2R_9_10955001 chr2R_10955001 RAL-42 524 chr2R 11009802 11009848 chr2R 11018993 11019029 roo 6 9190 4.0 1.5 2.8 1.6 9227 chr2R 11009802 intron luna - chr2R 11014416 intron luna - chr2R 11019029 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-42 525 chr2R 11118144 11118170 chr2R 11118241 11118267 4 97 0.0 4.5 2.2 1.2 123 chr2R 11118144 3` UTR Cyp12d1-p - chr2R 11118206 3` UTR Cyp12d1-p - chr2R 11118267 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-42 526 chr2R 11150544 11150796 chr2R 11150652 11150892 10 107 6.5 2.5 4.5 1.8 348 chr2R 11150544 intron CG13229 - chr2R 11150718 intron CG13229 - chr2R 11150892 intron CG13229 - chr2R_10_11150001 chr2R_11150001 RAL-42 527 chr2R 11155831 11155846 chr2R 11155955 11155970 7 124 7.5 7.0 7.2 0.9 139 chr2R 11155831 intron CG13229 - chr2R 11155900 intron CG13229 - chr2R 11155970 intron CG13229 - chr2R_7_11155001 chr2R_11155001 RAL-42 528 chr2R 11179250 11179281 chr2R 11179356 11179383 10 104 9.0 4.0 6.5 1.3 133 chr2R 11179250 intron shn + chr2R 11179316 intron shn + chr2R 11179383 intron shn + chr2R_10_11175001 chr2R_11175001 RAL-42 529 chr2R 11207816 11207846 chr2R 11208012 11208044 BS 12 210 3.5 6.5 5.0 2.0 228 chr2R 11207816 intron shn + chr2R 11207930 intron shn + chr2R 11208044 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-42 530 chr2R 11250076 11250104 chr2R 11250254 11250282 7 178 3.5 1.0 2.2 2.2 206 chr2R 11250076 intergenic CG43112 +,Or47a + chr2R 11250179 intergenic Or47a +,CG43112 + chr2R 11250282 intergenic Or47a +,CG43112 + chr2R_7_11250001 chr2R_11250001 RAL-42 531 chr2R 11263830 11263840 chr2R 11263966 11263976 4 136 0.0 8.5 4.2 0.8 146 chr2R 11263830 intergenic not near genes chr2R 11263903 intergenic not near genes chr2R 11263976 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-42 532 chr2R 11265706 11265724 chr2R 11265808 11265817 5 100 3.5 0.0 1.8 1.8 111 chr2R 11265706 exon Cpr47Ee + chr2R 11265762 exon Cpr47Ee + chr2R 11265817 intron Cpr47Ee + chr2R_5_11265001 chr2R_11265001 RAL-42 533 chr2R 11274289 11274322 chr2R 11274507 11274524 8 212 4.0 2.0 3.0 2.0 235 chr2R 11274289 intron TpnC47D - chr2R 11274406 intron TpnC47D - chr2R 11274524 intron TpnC47D - chr2R_8_11270001 chr2R_11270001 RAL-42 534 chr2R 11297624 11297650 chr2R 11301965 11301991 flea 12 4341 5.0 0.0 2.5 3.4 4367 chr2R 11297624 intergenic CG42336 - chr2R 11299808 intergenic not near genes chr2R 11301991 5` UTR CG7741 + chr2R_12_11295001 chr2R_11295001 RAL-42 535 chr2R 11366152 11366163 chr2R 11366251 11366262 4 99 6.5 6.0 6.2 0.6 110 chr2R 11366152 intergenic not near genes chr2R 11366207 intergenic not near genes chr2R 11366262 intergenic CG13204 + chr2R_4_11365001 chr2R_11365001 RAL-42 536 chr2R 11366167 11366177 chr2R 11366246 11366276 5 92 5.0 5.0 5.0 0.8 109 chr2R 11366167 intergenic not near genes chr2R 11366222 intergenic CG13204 + chr2R 11366276 intergenic CG13204 + chr2R_5_11365001 chr2R_11365001 RAL-42 537 chr2R 11368009 11368042 chr2R 11368105 11368138 9 96 4.0 3.0 3.5 2.0 129 chr2R 11368009 intron CG13204 + chr2R 11368074 intron CG13204 + chr2R 11368138 intron CG13204 + chr2R_9_11365001 chr2R_11365001 RAL-42 538 chr2R 11404772 11404797 chr2R 11404879 11404903 4 106 3.5 10.5 7.0 0.5 131 chr2R 11404772 intergenic not near genes chr2R 11404838 intergenic not near genes chr2R 11404903 intergenic not near genes chr2R_4_11400001 chr2R_11400001 RAL-42 539 chr2R 11415533 11415551 chr2R 11418665 11418708 opus 5 3159 2.5 3.5 3.0 1.2 3175 chr2R 11415533 intron Drip - chr2R 11417120 intron Drip - chr2R 11418708 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-42 540 chr2R 11425662 11425683 chr2R 11425762 11425783 6 100 0.0 4.0 2.0 2.0 121 chr2R 11425662 intron Drip - chr2R 11425722 intron Drip - chr2R 11425783 intron Drip - chr2R_6_11425001 chr2R_11425001 RAL-42 541 chr2R 11472629 11472674 chr2R 11473846 11473891 pogo 11 1217 4.5 3.0 3.8 2.3 1262 chr2R 11472629 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473891 intergenic not near genes chr2R_11_11470001 chr2R_11470001 RAL-42 542 chr2R 11494291 11494328 chr2R 11494394 11494431 4 103 1.0 3.5 2.2 1.2 140 chr2R 11494291 intron inv + chr2R 11494361 intron inv + chr2R 11494431 intron inv + chr2R_4_11490001 chr2R_11490001 RAL-42 543 chr2R 11516773 11516819 chr2R 11516876 11516914 7 99 0.5 3.5 2.0 2.3 141 chr2R 11516773 intergenic not near genes chr2R 11516844 intergenic not near genes chr2R 11516914 intergenic not near genes chr2R_7_11515001 chr2R_11515001 RAL-42 544 chr2R 11538283 11538322 chr2R 11538403 11538442 15 120 2.0 3.0 2.5 4.3 159 chr2R 11538283 intergenic not near genes chr2R 11538362 intergenic not near genes chr2R 11538442 intergenic not near genes chr2R_15_11535001 chr2R_11535001 RAL-42 545 chr2R 11631376 11631407 chr2R 11631476 11631507 12 100 0.0 3.0 1.5 4.8 131 chr2R 11631376 intron CG9005 - chr2R 11631442 intron CG9005 - chr2R 11631507 intron CG9005 - chr2R_12_11630001 chr2R_11630001 RAL-42 546 chr2R 11667361 11667402 chr2R 11667475 11667486 14 112 1.5 2.5 2.0 4.7 125 chr2R 11667361 intron,intron Roc2 -,Tret1-1 + chr2R 11667424 intron,intron Roc2 -,Tret1-1 + chr2R 11667486 intron,intron Roc2 -,Tret1-1 + chr2R_14_11665001 chr2R_11665001 RAL-42 547 chr2R 11724138 11724185 chr2R 11724242 11724293 6 106 3.0 2.0 2.5 1.7 155 chr2R 11724138 intron pyr + chr2R 11724216 intron pyr + chr2R 11724293 intron pyr + chr2R_6_11720001 chr2R_11720001 RAL-42 548 chr2R 11826865 11826916 chr2R 11826997 11827048 18 132 6.5 6.5 6.5 2.4 183 chr2R 11826865 3` UTR CG13192 + chr2R 11826956 3` UTR CG13192 + chr2R 11827048 3` UTR CG13192 + chr2R_18_11825001 chr2R_11825001 RAL-42 549 chr2R 11829053 11829090 chr2R 11829187 11829228 9 136 2.0 6.0 4.0 1.8 175 chr2R 11829053 exon Sobp - chr2R 11829140 intron Sobp - chr2R 11829228 intron Sobp - chr2R_9_11825001 chr2R_11825001 RAL-42 550 chr2R 11863840 11863885 chr2R 11863947 11863992 10 107 3.0 3.0 3.0 2.5 152 chr2R 11863840 intergenic CG42531 + chr2R 11863916 intergenic CG42531 + chr2R 11863992 intergenic CG42531 + chr2R_10_11860001 chr2R_11860001 RAL-42 551 chr2R 11932701 11932755 chr2R 11932992 11933046 15 291 6.0 3.5 4.8 2.6 345 chr2R 11932701 intergenic not near genes chr2R 11932874 intergenic not near genes chr2R 11933046 intergenic not near genes chr2R_15_11930001 chr2R_11930001 RAL-42 552 chr2R 11951333 11951374 chr2R 11951430 11951471 4 96 2.5 2.5 2.5 1.1 138 chr2R 11951333 intron CG13188 + chr2R 11951402 intron CG13188 + chr2R 11951471 intron CG13188 + chr2R_4_11950001 chr2R_11950001 RAL-42 553 chr2R 12093933 12093980 chr2R 12094066 12094113 8 132 3.0 3.0 3.0 2.0 180 chr2R 12093933 intron jeb - chr2R 12094023 intron jeb - chr2R 12094113 intron jeb - chr2R_8_12090001 chr2R_12090001 RAL-42 554 chr2R 12185983 12186037 chr2R 12186098 12186152 22 112 3.5 5.5 4.5 4.0 169 chr2R 12185983 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186152 intron Cyp6g1 + chr2R_22_12185001 chr2R_12185001 RAL-42 555 chr2R 12187482 12187487 chr2R 12190078 12190100 5 2601 57.0 46.5 51.8 0.1 2618 chr2R 12187482 exon Cyp6g1 + chr2R 12188791 exon Cyp6g2 - chr2R 12190100 exon Cyp6g2 - chr2R_5_12185001 chr2R_12185001 RAL-42 556 chr2R 12187476 12187521 chr2R 12190109 12190124 9 2606 89.5 38.5 64.0 0.1 2648 chr2R 12187476 exon Cyp6g1 + chr2R 12188800 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_9_12185001 chr2R_12185001 RAL-42 557 chr2R 12217578 12217593 chr2R 12217662 12217694 6 97 5.5 5.5 5.5 0.9 116 chr2R 12217578 intergenic not near genes chr2R 12217636 intergenic not near genes chr2R 12217694 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-42 558 chr2R 12334876 12334886 chr2R 12334974 12334984 4 98 4.5 3.5 4.0 0.8 108 chr2R 12334876 intergenic CG8490 + chr2R 12334930 intergenic CG8490 + chr2R 12334984 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-42 559 chr2R 12492076 12492123 chr2R 12492182 12492229 7 102 2.0 2.5 2.2 2.2 153 chr2R 12492076 intron fdl - chr2R 12492152 intron fdl - chr2R 12492229 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-42 560 chr2R 12728857 12728906 chr2R 12728980 12729024 6 118 0.0 3.5 1.8 2.1 167 chr2R 12728857 intron CG42663 + chr2R 12728940 intron CG42663 + chr2R 12729024 intron CG42663 + chr2R_6_12725001 chr2R_12725001 RAL-42 561 chr2R 12730960 12730967 chr2R 12731259 12731266 5 299 7.0 5.5 6.2 0.7 306 chr2R 12730960 intron CG42663 + chr2R 12731113 intron CG42663 + chr2R 12731266 intron CG42663 + chr2R_5_12730001 chr2R_12730001 RAL-42 562 chr2R 12730969 12731011 chr2R 12731256 12731310 13 292 2.5 5.0 3.8 2.7 341 chr2R 12730969 intron CG42663 + chr2R 12731140 intron CG42663 + chr2R 12731310 intron CG42663 + chr2R_13_12730001 chr2R_12730001 RAL-42 563 chr2R 12845394 12845440 chr2R 12845495 12845537 6 100 6.5 1.5 4.0 1.2 143 chr2R 12845394 intergenic CG17575 - chr2R 12845466 intergenic CG17575 - chr2R 12845537 intergenic CG17575 - chr2R_6_12845001 chr2R_12845001 RAL-42 564 chr2R 12897460 12897483 chr2R 12897571 12897594 8 111 0.0 0.0 0.0 8.0 134 chr2R 12897460 intron vg + chr2R 12897527 intron vg + chr2R 12897594 intron vg + chr2R_8_12895001 chr2R_12895001 RAL-42 565 chr2R 13107846 13107856 chr2R 13107955 13107965 5 109 6.5 0.0 3.2 1.2 119 chr2R 13107846 intergenic not near genes chr2R 13107906 intergenic not near genes chr2R 13107965 intergenic not near genes chr2R_5_13105001 chr2R_13105001 RAL-42 566 chr2R 13129171 13129209 chr2R 13129269 13129307 5 98 8.5 1.5 5.0 0.8 136 chr2R 13129171 intergenic CG3955 -,CG13326 - chr2R 13129239 intergenic CG3955 -,CG13326 - chr2R 13129307 intergenic CG13326 -,CG3955 - chr2R_5_13125001 chr2R_13125001 RAL-42 567 chr2R 13136823 13136860 chr2R 13141641 13141678 Doc 12 4817 6.0 3.0 4.5 2.2 4855 chr2R 13136823 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141678 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-42 568 chr2R 13167428 13167440 chr2R 13167542 13167554 4 114 8.0 0.0 4.0 0.8 126 chr2R 13167428 intron GLaz - chr2R 13167491 intron GLaz - chr2R 13167554 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-42 569 chr2R 13218290 13218298 chr2R 13218393 13218401 5 103 14.0 0.0 7.0 0.6 111 chr2R 13218290 intron CG4630 - chr2R 13218346 intron CG4630 - chr2R 13218401 intron CG4630 - chr2R_5_13215001 chr2R_13215001 RAL-42 570 chr2R 13261113 13261146 chr2R 13261263 13261298 12 152 6.0 2.5 4.2 2.3 185 chr2R 13261113 intron CG42319 + chr2R 13261206 intron CG42319 + chr2R 13261298 intron CG42319 + chr2R_12_13260001 chr2R_13260001 RAL-42 571 chr2R 13368737 13368788 chr2R 13368868 13368919 7 131 3.0 0.5 1.8 2.5 182 chr2R 13368737 intergenic not near genes chr2R 13368828 intergenic not near genes chr2R 13368919 intergenic not near genes chr2R_7_13365001 chr2R_13365001 RAL-42 572 chr2R 13403916 13403931 chr2R 13404021 13404036 4 105 3.0 1.5 2.2 1.2 120 chr2R 13403916 intergenic not near genes chr2R 13403976 intergenic not near genes chr2R 13404036 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-42 573 chr2R 13431472 13431518 chr2R 13431571 13431617 7 99 3.5 2.5 3.0 1.8 145 chr2R 13431472 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431617 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-42 574 chr2R 13433720 13433748 chr2R 13433822 13433847 4 101 8.5 5.0 6.8 0.5 127 chr2R 13433720 intron,3` UTR CG42321 -,CG30065 + chr2R 13433784 intron CG42321 - chr2R 13433847 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-42 575 chr2R 13532515 13532526 chr2R 13532651 13532662 5 136 9.0 5.5 7.2 0.6 147 chr2R 13532515 intron Vmat - chr2R 13532588 intron Vmat - chr2R 13532662 intron Vmat - chr2R_5_13530001 chr2R_13530001 RAL-42 576 chr2R 13580484 13580532 chr2R 13580854 13580901 jockey 9 369 0.0 7.5 3.8 1.9 417 chr2R 13580484 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580901 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-42 577 chr2R 13694605 13694656 chr2R 13694702 13694753 12 97 3.0 3.5 3.2 2.9 148 chr2R 13694605 intron fas + chr2R 13694679 intron fas + chr2R 13694753 intron fas + chr2R_12_13690001 chr2R_13690001 RAL-42 578 chr2R 13709824 13709854 chr2R 13709937 13709967 8 113 3.0 9.5 6.2 1.1 143 chr2R 13709824 intron fas + chr2R 13709896 intron fas + chr2R 13709967 intron fas + chr2R_8_13705001 chr2R_13705001 RAL-42 579 chr2R 13738918 13738933 chr2R 13739041 13739056 10 123 5.0 5.5 5.2 1.6 138 chr2R 13738918 intron fas + chr2R 13738987 intron fas + chr2R 13739056 intron fas + chr2R_10_13735001 chr2R_13735001 RAL-42 580 chr2R 13748013 13748050 chr2R 13748112 13748149 7 99 10.0 6.5 8.2 0.8 136 chr2R 13748013 3` UTR fas + chr2R 13748081 3` UTR fas + chr2R 13748149 3` UTR fas + chr2R_7_13745001 chr2R_13745001 RAL-42 581 chr2R 13749495 13749526 chr2R 13749586 13749635 6 104 3.5 3.5 3.5 1.3 140 chr2R 13749495 intergenic fas + chr2R 13749565 intergenic fas + chr2R 13749635 intergenic fas + chr2R_6_13745001 chr2R_13745001 RAL-42 582 chr2R 13768980 13769005 chr2R 13769084 13769124 5 116 3.0 5.0 4.0 1.0 144 chr2R 13768980 intergenic not near genes chr2R 13769052 intergenic not near genes chr2R 13769124 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-42 583 chr2R 13888741 13888792 chr2R 13888838 13888902 4 105 2.0 0.0 1.0 2.0 161 chr2R 13888741 intron shot - chr2R 13888822 intron shot - chr2R 13888902 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-42 584 chr2R 14019929 14019975 chr2R 14020043 14020089 5 114 0.0 4.5 2.2 1.6 160 chr2R 14019929 intron mam + chr2R 14020009 intron mam + chr2R 14020089 intron mam + chr2R_5_14020001 chr2R_14020001 RAL-42 585 chr2R 14037242 14037297 chr2R 14037345 14037400 5 103 0.0 2.5 1.2 2.3 158 chr2R 14037242 intron mam + chr2R 14037321 intron mam + chr2R 14037400 intron mam + chr2R_5_14035001 chr2R_14035001 RAL-42 586 chr2R 14129455 14129493 chr2R 14129738 14129776 5 283 1.5 2.5 2.0 1.7 321 chr2R 14129455 intron Prosap - chr2R 14129616 intron Prosap - chr2R 14129776 intron Prosap - chr2R_5_14125001 chr2R_14125001 RAL-42 587 chr2R 14168348 14168396 chr2R 14168457 14168505 28 109 9.5 8.0 8.8 2.9 157 chr2R 14168348 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168426 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168505 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_28_14165001 chr2R_14165001 RAL-42 588 chr2R 14187293 14187339 chr2R 14187393 14187444 13 95 1.5 2.0 1.8 4.6 151 chr2R 14187293 exon CG30069 + chr2R 14187368 intron CG30069 + chr2R 14187444 intron CG30069 + chr2R_13_14185001 chr2R_14185001 RAL-42 589 chr2R 14285038 14285047 chr2R 14285141 14285150 7 103 4.0 6.0 5.0 1.2 112 chr2R 14285038 intron Ih + chr2R 14285094 intron Ih + chr2R 14285150 intron Ih + chr2R_7_14285001 chr2R_14285001 RAL-42 590 chr2R 14357535 14357570 chr2R 14357645 14357680 10 108 7.5 3.5 5.5 1.5 145 chr2R 14357535 intergenic CG8617 -,Arc1 - chr2R 14357608 intergenic Arc1 -,CG8617 - chr2R 14357680 intergenic Arc1 -,CG8617 - chr2R_10_14355001 chr2R_14355001 RAL-42 591 chr2R 14394215 14394228 chr2R 14399024 14399037 Doc 5 4808 8.0 0.0 4.0 1.0 4822 chr2R 14394215 intergenic not near genes chr2R 14396626 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-42 592 chr2R 14400513 14400523 chr2R 14400610 14400614 6 96 9.5 8.0 8.8 0.6 101 chr2R 14400513 intergenic not near genes chr2R 14400564 intergenic not near genes chr2R 14400614 intergenic not near genes chr2R_6_14400001 chr2R_14400001 RAL-42 593 chr2R 14400526 14400547 chr2R 14400609 14400646 11 98 6.5 7.5 7.0 1.4 120 chr2R 14400526 intergenic not near genes chr2R 14400586 intergenic not near genes chr2R 14400646 intergenic not near genes chr2R_11_14400001 chr2R_14400001 RAL-42 594 chr2R 14418966 14419012 chr2R 14419064 14419109 11 97 4.0 2.5 3.2 2.6 143 chr2R 14418966 intergenic not near genes chr2R 14419038 intergenic not near genes chr2R 14419109 intergenic not near genes chr2R_11_14415001 chr2R_14415001 RAL-42 595 chr2R 14497371 14497418 chr2R 14498554 14498604 1360 7 1183 0.0 3.0 1.5 2.8 1233 chr2R 14497371 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498604 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-42 596 chr2R 14566424 14566444 chr2R 14566531 14566550 4 107 7.0 1.0 4.0 0.8 126 chr2R 14566424 intron ttv + chr2R 14566487 intron ttv + chr2R 14566550 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-42 597 chr2R 14714367 14714397 chr2R 14714663 14714674 6 301 1.5 2.5 2.0 2.0 307 chr2R 14714367 intergenic not near genes chr2R 14714520 intergenic not near genes chr2R 14714674 intergenic not near genes chr2R_6_14710001 chr2R_14710001 RAL-42 598 chr2R 14799878 14799889 chr2R 14799973 14799985 4 96 1.5 9.5 5.5 0.6 107 chr2R 14799878 intron kn - chr2R 14799932 intron kn - chr2R 14799985 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-42 599 chr2R 14889194 14889214 chr2R 14897821 14897842 Max-element 6 8628 5.0 0.0 2.5 1.7 8648 chr2R 14889194 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-42 600 chr2R 14911680 14911727 chr2R 14911823 14911870 11 143 6.0 3.5 4.8 1.9 190 chr2R 14911680 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911870 intron CG10249 - chr2R_11_14910001 chr2R_14910001 RAL-42 601 chr2R 14922133 14922160 chr2R 14922229 14922244 9 95 0.5 3.0 1.8 3.2 111 chr2R 14922133 intron CG10249 - chr2R 14922188 intron CG10249 - chr2R 14922244 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-42 602 chr2R 14934436 14934449 chr2R 14934544 14934557 5 108 5.5 0.0 2.8 1.3 121 chr2R 14934436 intron CG10253 - chr2R 14934496 intron CG10253 - chr2R 14934557 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-42 603 chr2R 14955646 14955665 chr2R 14955755 14955774 7 109 5.0 0.0 2.5 2.0 128 chr2R 14955646 intron aPKC - chr2R 14955710 intron aPKC - chr2R 14955774 intron aPKC - chr2R_7_14955001 chr2R_14955001 RAL-42 604 chr2R 14973153 14973193 chr2R 14973263 14973305 8 110 3.5 0.0 1.8 2.9 152 chr2R 14973153 intron ckn + chr2R 14973229 intron ckn + chr2R 14973305 intron ckn + chr2R_8_14970001 chr2R_14970001 RAL-42 605 chr2R 15084957 15085001 chr2R 15092026 15092070 297 21 7068 5.0 2.5 3.8 4.4 7113 chr2R 15084957 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092070 5` UTR CR44457 + chr2R_21_15085001 chr2R_15085001 RAL-42 606 chr2R 15119298 15119333 chr2R 15127799 15127834 Tirant 4 8500 1.5 1.5 1.5 1.6 8536 chr2R 15119298 intron chn + chr2R 15123566 intron chn + chr2R 15127834 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-42 607 chr2R 15133468 15133517 chr2R 15133567 15133606 9 97 6.5 8.0 7.2 1.1 138 chr2R 15133468 intron chn + chr2R 15133537 intron chn + chr2R 15133606 intron chn + chr2R_9_15130001 chr2R_15130001 RAL-42 608 chr2R 15137949 15137998 chr2R 15138049 15138100 8 101 5.5 0.0 2.8 2.1 151 chr2R 15137949 intron chn + chr2R 15138024 intron chn + chr2R 15138100 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-42 609 chr2R 15296139 15296170 chr2R 15296242 15296272 6 101 4.0 3.0 3.5 1.3 133 chr2R 15296139 intron Trpm - chr2R 15296206 intron Trpm - chr2R 15296272 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-42 610 chr2R 15330185 15330226 chr2R 15330339 15330380 11 154 7.0 3.0 5.0 1.8 195 chr2R 15330185 intergenic CR44371 - chr2R 15330282 intergenic CR44371 - chr2R 15330380 intergenic CR44371 - chr2R_11_15330001 chr2R_15330001 RAL-42 611 chr2R 15537689 15537740 chr2R 15537791 15537842 16 102 8.5 5.5 7.0 2.0 153 chr2R 15537689 3` UTR CG30471 + chr2R 15537766 3` UTR CG30471 + chr2R 15537842 intergenic CG30471 +,CG30467 + chr2R_16_15535001 chr2R_15535001 RAL-42 612 chr2R 15702945 15702966 chr2R 15703042 15703063 11 96 8.5 8.0 8.2 1.2 118 chr2R 15702945 intergenic not near genes chr2R 15703004 intergenic not near genes chr2R 15703063 intergenic not near genes chr2R_11_15700001 chr2R_15700001 RAL-42 613 chr2R 16245395 16245430 chr2R 16245509 16245544 10 114 3.5 7.0 5.2 1.6 149 chr2R 16245395 intron CngA - chr2R 16245470 intron CngA - chr2R 16245544 intron CngA - chr2R_10_16245001 chr2R_16245001 RAL-42 614 chr2R 16352852 16352871 chr2R 16352955 16352974 4 103 2.0 3.0 2.5 1.1 122 chr2R 16352852 intergenic not near genes chr2R 16352913 intergenic not near genes chr2R 16352974 intergenic not near genes chr2R_4_16350001 chr2R_16350001 RAL-42 615 chr2R 16380110 16380143 chr2R 16380218 16380261 13 114 8.0 2.0 5.0 2.2 151 chr2R 16380110 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380186 3` UTR CR45317 - chr2R 16380261 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_13_16380001 chr2R_16380001 RAL-42 616 chr2R 16503856 16503902 chr2R 16503966 16504012 10 105 4.0 4.0 4.0 2.0 156 chr2R 16503856 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16504012 intron Sema-2a + chr2R_10_16500001 chr2R_16500001 RAL-42 617 chr2R 16518034 16518063 chr2R 16518129 16518159 5 96 5.5 5.5 5.5 0.8 125 chr2R 16518034 intron Sema-2a + chr2R 16518096 intron Sema-2a + chr2R 16518159 intron Sema-2a + chr2R_5_16515001 chr2R_16515001 RAL-42 618 chr2R 16546981 16546989 chr2R 16547081 16547088 5 100 0.0 0.0 0.0 5.0 107 chr2R 16546981 intergenic not near genes chr2R 16547034 intergenic not near genes chr2R 16547088 intergenic not near genes chr2R_5_16545001 chr2R_16545001 RAL-42 619 chr2R 16552047 16552079 chr2R 16552146 16552166 4 94 4.0 3.5 3.8 0.8 119 chr2R 16552047 intergenic Syn2 + chr2R 16552106 intergenic Syn2 + chr2R 16552166 intergenic Syn2 + chr2R_4_16550001 chr2R_16550001 RAL-42 620 chr2R 16571852 16571900 chr2R 16571967 16572015 15 115 4.0 6.0 5.0 2.5 163 chr2R 16571852 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16572015 intergenic CG4927 + chr2R_15_16570001 chr2R_16570001 RAL-42 621 chr2R 16665101 16665140 chr2R 16665205 16665244 5 104 1.0 2.5 1.8 1.8 143 chr2R 16665101 intron Picot - chr2R 16665172 intron Picot - chr2R 16665244 intron Picot - chr2R_5_16665001 chr2R_16665001 RAL-42 622 chr2R 16775624 16775673 chr2R 16775907 16775957 16 283 3.0 3.5 3.2 3.8 333 chr2R 16775624 3` UTR Arp53D + chr2R 16775790 intergenic Arp53D + chr2R 16775957 intergenic Arp53D + chr2R_16_16775001 chr2R_16775001 RAL-42 623 chr2R 16787454 16787485 chr2R 16787556 16787587 12 99 6.5 2.5 4.5 2.2 133 chr2R 16787454 intron CG5522 + chr2R 16787520 intron CG5522 + chr2R 16787587 intron CG5522 + chr2R_12_16785001 chr2R_16785001 RAL-42 624 chr2R 16893759 16893805 chr2R 16893859 16893908 9 102 5.5 3.5 4.5 1.6 149 chr2R 16893759 intron CG8910 - chr2R 16893834 intron CG8910 - chr2R 16893908 intron CG8910 - chr2R_9_16890001 chr2R_16890001 RAL-42 625 chr2R 16981949 16982097 chr2R 16982082 16982195 6 131 0.0 0.0 0.0 6.0 246 chr2R 16981949 intron Cbp53E + chr2R 16982072 intron Cbp53E + chr2R 16982195 intron Cbp53E + chr2R_6_16980001 chr2R_16980001 RAL-42 626 chr2R 16983608 16983657 chr2R 16983709 16983749 10 100 4.0 3.0 3.5 2.2 141 chr2R 16983608 intron Cbp53E + chr2R 16983678 intron Cbp53E + chr2R 16983749 intron Cbp53E + chr2R_10_16980001 chr2R_16980001 RAL-42 627 chr2R 17079035 17079083 chr2R 17079137 17079184 7 102 3.5 4.0 3.8 1.5 149 chr2R 17079035 intron CG30460 - chr2R 17079110 intron CG30460 - chr2R 17079184 intron CG30460 - chr2R_7_17075001 chr2R_17075001 RAL-42 628 chr2R 17147234 17147264 chr2R 17152285 17152315 jockey 5 5051 6.5 4.5 5.5 0.8 5081 chr2R 17147234 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152315 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-42 629 chr2R 17161147 17161202 chr2R 17161252 17161307 17 104 3.0 2.5 2.8 4.5 160 chr2R 17161147 intergenic CG30457 - chr2R 17161227 intergenic CG30457 - chr2R 17161307 intergenic CG30457 - chr2R_17_17160001 chr2R_17160001 RAL-42 630 chr2R 17176354 17176384 chr2R 17182554 17182594 diver 6 6208 0.0 6.0 3.0 1.5 6240 chr2R 17176354 intergenic not near genes chr2R 17179474 intergenic not near genes chr2R 17182594 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-42 631 chr2R 17236501 17236520 chr2R 17241725 17241744 copia 5 5224 2.0 5.0 3.5 1.1 5243 chr2R 17236501 intron mbl + chr2R 17239122 intron mbl + chr2R 17241744 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-42 632 chr2R 17299169 17299183 chr2R 17299297 17299311 4 128 5.5 2.5 4.0 0.8 142 chr2R 17299169 intron mbl + chr2R 17299240 intron mbl + chr2R 17299311 intron mbl + chr2R_4_17295001 chr2R_17295001 RAL-42 633 chr2R 17389266 17389299 chr2R 17389357 17389409 8 99 2.0 2.5 2.2 2.5 143 chr2R 17389266 intergenic CR44344 - chr2R 17389338 intergenic CR44344 - chr2R 17389409 intergenic CR44344 - chr2R_8_17385001 chr2R_17385001 RAL-42 634 chr2R 17458986 17459035 chr2R 17459091 17459140 19 105 5.5 8.0 6.8 2.4 154 chr2R 17458986 intron CG14478 + chr2R 17459063 intron CG14478 + chr2R 17459140 intron CG14478 + chr2R_19_17455001 chr2R_17455001 RAL-42 635 chr2R 17470331 17470355 chr2R 17470435 17470459 6 104 3.5 6.0 4.8 1.0 128 chr2R 17470331 intron qkr54B + chr2R 17470395 intron qkr54B + chr2R 17470459 intron qkr54B + chr2R_6_17470001 chr2R_17470001 RAL-42 636 chr2R 17485917 17485941 chr2R 17490689 17490731 F-element 9 4788 2.0 4.0 3.0 2.2 4814 chr2R 17485917 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488324 intron NT5E-2 + chr2R 17490731 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-42 637 chr2R 17500637 17500691 chr2R 17500733 17500787 16 96 5.5 5.5 5.5 2.5 150 chr2R 17500637 intergenic not near genes chr2R 17500712 intergenic not near genes chr2R 17500787 intergenic not near genes chr2R_16_17500001 chr2R_17500001 RAL-42 638 chr2R 17679589 17679596 chr2R 17679736 17679743 4 147 0.5 2.5 1.5 1.6 154 chr2R 17679589 intron Sema-1b - chr2R 17679666 intron Sema-1b - chr2R 17679743 intron Sema-1b - chr2R_4_17675001 chr2R_17675001 RAL-42 639 chr2R 17782342 17782390 chr2R 17783565 17783613 pogo 16 1223 3.5 6.5 5.0 2.7 1271 chr2R 17782342 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783613 intergenic mir-31a - chr2R_16_17780001 chr2R_17780001 RAL-42 640 chr2R 17784010 17784057 chr2R 17784271 17784313 pogo 12 257 7.5 2.5 5.0 2.0 303 chr2R 17784010 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784313 intergenic mir-31a - chr2R_12_17780001 chr2R_17780001 RAL-42 641 chr2R 17886617 17886654 chr2R 17886711 17886756 7 99 4.5 1.0 2.8 1.8 139 chr2R 17886617 intron Elk + chr2R 17886686 intron Elk + chr2R 17886756 intron Elk + chr2R_7_17885001 chr2R_17885001 RAL-42 642 chr2R 17920276 17920307 chr2R 17920498 17920509 10 220 2.0 3.5 2.8 2.6 233 chr2R 17920276 intron Elk + chr2R 17920392 intron Elk + chr2R 17920509 intron Elk + chr2R_10_17920001 chr2R_17920001 RAL-42 643 chr2R 17982908 17982940 chr2R 17983013 17983045 5 104 2.0 1.5 1.8 1.8 137 chr2R 17982908 intron dpr13 - chr2R 17982976 intron dpr13 - chr2R 17983045 intron dpr13 - chr2R_5_17980001 chr2R_17980001 RAL-42 644 chr2R 17997057 17997072 chr2R 17997177 17997195 9 124 26.0 11.5 18.8 0.5 138 chr2R 17997057 intron dpr13 - chr2R 17997126 intron dpr13 - chr2R 17997195 intron dpr13 - chr2R_9_17995001 chr2R_17995001 RAL-42 645 chr2R 18032078 18032111 chr2R 18032227 18032244 5 146 0.0 4.0 2.0 1.7 166 chr2R 18032078 intergenic not near genes chr2R 18032161 intergenic not near genes chr2R 18032244 intergenic not near genes chr2R_5_18030001 chr2R_18030001 RAL-42 646 chr2R 18045654 18045700 chr2R 18046026 18046072 jockey 26 372 5.5 12.5 9.0 2.6 418 chr2R 18045654 intergenic not near genes chr2R 18045863 intergenic not near genes chr2R 18046072 intergenic CG5767 - chr2R_26_18045001 chr2R_18045001 RAL-42 647 chr2R 18111685 18111713 chr2R 18115573 18115600 F-element 6 3888 0.0 5.5 2.8 1.6 3915 chr2R 18111685 intergenic not near genes chr2R 18113642 intergenic not near genes chr2R 18115600 intergenic not near genes chr2R_6_18110001 chr2R_18110001 RAL-42 648 chr2R 18124318 18124368 chr2R 18124415 18124465 23 96 5.5 3.5 4.5 4.2 147 chr2R 18124318 intron stau - chr2R 18124392 intron stau - chr2R 18124465 intron stau - chr2R_23_18120001 chr2R_18120001 RAL-42 649 chr2R 18207451 18207495 chr2R 18207562 18207606 13 110 5.0 7.5 6.2 1.8 155 chr2R 18207451 intergenic CG30114 + chr2R 18207528 intergenic CG30114 + chr2R 18207606 intergenic CG30114 + chr2R_13_18205001 chr2R_18205001 RAL-42 650 chr2R 18308267 18308288 chr2R 18308393 18308414 4 126 3.0 1.0 2.0 1.3 147 chr2R 18308267 intron sbb - chr2R 18308340 intron sbb - chr2R 18308414 intron sbb - chr2R_4_18305001 chr2R_18305001 RAL-42 651 chr2R 18358382 18358404 chr2R 18372614 18372636 roo 7 14232 8.0 6.5 7.2 0.9 14254 chr2R 18358382 intergenic not near genes chr2R 18365509 intergenic not near genes chr2R 18372636 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-42 652 chr2R 18402483 18402533 chr2R 18402591 18402631 8 107 2.5 1.0 1.8 2.9 148 chr2R 18402483 intergenic not near genes chr2R 18402557 intergenic not near genes chr2R 18402631 intergenic not near genes chr2R_8_18400001 chr2R_18400001 RAL-42 653 chr2R 18471897 18471928 chr2R 18471993 18472024 6 96 0.0 1.0 0.5 4.0 127 chr2R 18471897 intron CG30116 - chr2R 18471960 intron CG30116 - chr2R 18472024 intron CG30116 - chr2R_6_18470001 chr2R_18470001 RAL-42 654 chr2R 18506805 18506848 chr2R 18507363 18507406 21 556 6.5 6.0 6.2 2.9 601 chr2R 18506805 intergenic not near genes chr2R 18507106 intergenic not near genes chr2R 18507406 intergenic not near genes chr2R_21_18505001 chr2R_18505001 RAL-42 655 chr2R 18550562 18550579 chr2R 18550671 18550688 4 109 6.5 5.5 6.0 0.6 126 chr2R 18550562 intergenic not near genes chr2R 18550625 intergenic not near genes chr2R 18550688 intergenic not near genes chr2R_4_18550001 chr2R_18550001 RAL-42 656 chr2R 18550587 18550609 chr2R 18550664 18550718 9 101 2.5 3.5 3.0 2.2 131 chr2R 18550587 intergenic not near genes chr2R 18550652 intergenic not near genes chr2R 18550718 intergenic not near genes chr2R_9_18550001 chr2R_18550001 RAL-42 657 chr2R 18575136 18575161 chr2R 18575373 18575398 6 236 0.5 3.0 1.8 2.1 262 chr2R 18575136 intron GEFmeso - chr2R 18575267 intron GEFmeso - chr2R 18575398 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-42 658 chr2R 18590853 18590899 chr2R 18600024 18600063 roo 7 9167 3.0 3.0 3.0 1.8 9210 chr2R 18590853 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600063 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-42 659 chr2R 18646398 18646432 chr2R 18646563 18646576 4 160 5.5 3.0 4.2 0.8 178 chr2R 18646398 intron SP2637 - chr2R 18646487 intron SP2637 - chr2R 18646576 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-42 660 chr2R 18692885 18692913 chr2R 18692992 18693020 12 105 5.0 2.5 3.8 2.5 135 chr2R 18692885 intron Sik3 + chr2R 18692952 intron Sik3 + chr2R 18693020 intron Sik3 + chr2R_12_18690001 chr2R_18690001 RAL-42 661 chr2R 18713219 18713271 chr2R 18713316 18713368 13 96 5.5 7.5 6.5 1.7 149 chr2R 18713219 intergenic not near genes chr2R 18713294 intergenic not near genes chr2R 18713368 intergenic not near genes chr2R_13_18710001 chr2R_18710001 RAL-42 662 chr2R 18778593 18778604 chr2R 18778711 18778722 6 117 4.5 0.0 2.2 1.9 129 chr2R 18778593 intergenic not near genes chr2R 18778658 intergenic not near genes chr2R 18778722 intergenic not near genes chr2R_6_18775001 chr2R_18775001 RAL-42 663 chr2R 18835875 18835893 chr2R 18835977 18835995 4 102 6.0 0.0 3.0 1.0 120 chr2R 18835875 intron CG15083 + chr2R 18835935 intron CG15083 + chr2R 18835995 intron CG15083 + chr2R_4_18835001 chr2R_18835001 RAL-42 664 chr2R 18964899 18964950 chr2R 18964995 18965046 21 96 5.0 5.5 5.2 3.4 147 chr2R 18964899 intergenic not near genes chr2R 18964972 intergenic not near genes chr2R 18965046 intergenic not near genes chr2R_21_18960001 chr2R_18960001 RAL-42 665 chr2R 19067717 19067752 chr2R 19067802 19067848 10 95 5.5 3.0 4.2 1.9 131 chr2R 19067717 intron 5-HT1A + chr2R 19067782 intron 5-HT1A + chr2R 19067848 intron 5-HT1A + chr2R_10_19065001 chr2R_19065001 RAL-42 666 chr2R 19076380 19076408 chr2R 19076493 19076515 6 113 1.0 1.5 1.2 2.7 135 chr2R 19076380 intron 5-HT1A + chr2R 19076448 intron 5-HT1A + chr2R 19076515 intron 5-HT1A + chr2R_6_19075001 chr2R_19075001 RAL-42 667 chr2R 19244328 19244465 chr2R 19244449 19244564 5 112 0.0 0.0 0.0 5.0 236 chr2R 19244328 intergenic not near genes chr2R 19244446 intergenic not near genes chr2R 19244564 intergenic not near genes chr2R_5_19240001 chr2R_19240001 RAL-42 668 chr2R 19253750 19253788 chr2R 19253849 19253887 8 99 5.0 1.0 3.0 2.0 137 chr2R 19253750 intergenic not near genes chr2R 19253818 intergenic not near genes chr2R 19253887 intergenic not near genes chr2R_8_19250001 chr2R_19250001 RAL-42 669 chr2R 19466575 19466615 chr2R 19466689 19466729 12 112 8.5 3.0 5.8 1.8 154 chr2R 19466575 intron par-1 + chr2R 19466652 intron par-1 + chr2R 19466729 intron par-1 + chr2R_12_19465001 chr2R_19465001 RAL-42 670 chr2R 19498453 19498503 chr2R 19498550 19498600 7 97 0.5 3.0 1.8 2.5 147 chr2R 19498453 intron CG15120 + chr2R 19498526 intron CG15120 + chr2R 19498600 intron CG15120 + chr2R_7_19495001 chr2R_19495001 RAL-42 671 chr2R 19536451 19536501 chr2R 19536553 19536603 12 102 3.5 3.5 3.5 2.7 152 chr2R 19536451 intron sm - chr2R 19536527 intron sm - chr2R 19536603 intron sm - chr2R_12_19535001 chr2R_19535001 RAL-42 672 chr2R 19588745 19588776 chr2R 19588843 19588874 6 98 3.0 0.5 1.8 2.1 129 chr2R 19588745 intron sm - chr2R 19588810 intron sm - chr2R 19588874 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-42 673 chr2R 19680607 19680631 chr2R 19680705 19680729 6 98 1.5 2.5 2.0 2.0 122 chr2R 19680607 intergenic CG15127 - chr2R 19680668 intergenic CG15127 - chr2R 19680729 intergenic CG15127 - chr2R_6_19680001 chr2R_19680001 RAL-42 674 chr2R 19699876 19699928 chr2R 19699981 19700033 12 105 4.5 3.5 4.0 2.4 157 chr2R 19699876 intergenic Obp56c - chr2R 19699954 intergenic Obp56c - chr2R 19700033 3` UTR Obp56c - chr2R_12_19695001 chr2R_19695001 RAL-42 675 chr2R 19701503 19701521 chr2R 19701607 19701614 4 101 9.0 5.0 7.0 0.5 111 chr2R 19701503 intergenic Obp56c - chr2R 19701558 intergenic Obp56c - chr2R 19701614 intergenic Obp56c - chr2R_4_19700001 chr2R_19700001 RAL-42 676 chr2R 19701528 19701544 chr2R 19701606 19701648 9 101 6.5 4.5 5.5 1.4 120 chr2R 19701528 intergenic Obp56c - chr2R 19701588 intergenic Obp56c - chr2R 19701648 intergenic not near genes chr2R_9_19700001 chr2R_19700001 RAL-42 677 chr2R 19773994 19774034 chr2R 19774127 19774167 9 133 6.5 7.5 7.0 1.1 173 chr2R 19773994 intergenic not near genes chr2R 19774080 intergenic not near genes chr2R 19774167 intergenic not near genes chr2R_9_19770001 chr2R_19770001 RAL-42 678 chr2R 19776580 19776623 chr2R 19779923 19779966 jockey 12 3343 1.5 4.5 3.0 3.0 3386 chr2R 19776580 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779966 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-42 679 chr2R 19914843 19914866 chr2R 19922275 19922298 mdg1 7 7432 7.5 3.0 5.2 1.1 7455 chr2R 19914843 intergenic not near genes chr2R 19918570 intergenic not near genes chr2R 19922298 intergenic not near genes chr2R_7_19915001 chr2R_19915001 RAL-42 680 chr2R 20008159 20008202 chr2R 20008268 20008299 4 106 5.0 1.5 3.2 1.0 140 chr2R 20008159 intergenic not near genes chr2R 20008229 intergenic not near genes chr2R 20008299 intergenic not near genes chr2R_4_20005001 chr2R_20005001 RAL-42 681 chr2R 20069225 20069268 chr2R 20071875 20071914 opus 15 2650 3.5 3.5 3.5 3.3 2689 chr2R 20069225 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071914 intergenic not near genes chr2R_15_20070001 chr2R_20070001 RAL-42 682 chr2R 20079820 20079866 chr2R 20079916 20079968 4 98 0.0 1.5 0.8 2.2 148 chr2R 20079820 intergenic not near genes chr2R 20079894 intergenic not near genes chr2R 20079968 intergenic not near genes chr2R_4_20075001 chr2R_20075001 RAL-42 683 chr2R 20087978 20088027 chr2R 20088106 20088155 17 126 4.0 9.5 6.8 2.2 177 chr2R 20087978 intergenic not near genes chr2R 20088066 intergenic not near genes chr2R 20088155 intergenic not near genes chr2R_17_20085001 chr2R_20085001 RAL-42 684 chr2R 20142433 20142445 chr2R 20142532 20142533 5 97 2.0 4.0 3.0 1.2 100 chr2R 20142433 intergenic not near genes chr2R 20142483 intergenic not near genes chr2R 20142533 intergenic not near genes chr2R_5_20140001 chr2R_20140001 RAL-42 685 chr2R 20395008 20395058 chr2R 20395199 20395253 6 191 3.0 0.0 1.5 2.4 245 chr2R 20395008 intergenic not near genes chr2R 20395130 intergenic not near genes chr2R 20395253 intergenic not near genes chr2R_6_20395001 chr2R_20395001 RAL-42 686 chr2R 20541971 20542013 chr2R 20542069 20542111 17 98 6.0 5.5 5.8 2.5 140 chr2R 20541971 intergenic not near genes chr2R 20542041 intergenic not near genes chr2R 20542111 intergenic not near genes chr2R_17_20540001 chr2R_20540001 RAL-42 687 chr2R 20572555 20572588 chr2R 20572665 20572698 10 110 5.0 5.0 5.0 1.7 143 chr2R 20572555 intron qsm - chr2R 20572626 intron qsm - chr2R 20572698 intron qsm - chr2R_10_20570001 chr2R_20570001 RAL-42 688 chr2R 20577087 20577118 chr2R 20577180 20577229 4 101 0.0 0.0 0.0 4.0 142 chr2R 20577087 intron qsm - chr2R 20577158 intron qsm - chr2R 20577229 intron qsm - chr2R_4_20575001 chr2R_20575001 RAL-42 689 chr2R 20700030 20700074 chr2R 20700131 20700145 9 100 3.0 0.0 1.5 3.6 115 chr2R 20700030 intron dpr + chr2R 20700088 intron dpr + chr2R 20700145 intron dpr + chr2R_9_20700001 chr2R_20700001 RAL-42 690 chr2R 20739436 20739475 chr2R 20744224 20744263 F-element 5 4788 2.0 4.0 3.0 1.2 4827 chr2R 20739436 intron dpr + chr2R 20741850 intron dpr + chr2R 20744263 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-42 691 chr2R 20783292 20783326 chr2R 20788084 20788118 F-element 16 4791 5.5 7.5 6.5 2.1 4826 chr2R 20783292 intergenic not near genes chr2R 20785705 intergenic not near genes chr2R 20788118 intergenic CG43666 - chr2R_16_20785001 chr2R_20785001 RAL-42 692 chr2R 20953278 20953288 chr2R 20953385 20953394 4 107 2.0 3.5 2.8 1.1 116 chr2R 20953278 intergenic not near genes chr2R 20953336 intergenic not near genes chr2R 20953394 intergenic not near genes chr2R_4_20950001 chr2R_20950001 RAL-42 693 chr2R 20967011 20967051 chr2R 20967108 20967148 4 97 2.0 0.0 1.0 2.0 137 chr2R 20967011 intergenic not near genes chr2R 20967080 intergenic not near genes chr2R 20967148 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-42 694 chr2R 21061683 21061722 chr2R 21061957 21061994 12 269 5.5 5.5 5.5 1.8 311 chr2R 21061683 exon Cht8 + chr2R 21061838 exon Cht8 + chr2R 21061994 exon Cht8 + chr2R_12_21060001 chr2R_21060001 RAL-42 695 chr2R 21103529 21103553 chr2R 21103619 21103653 6 95 2.5 0.0 1.2 2.7 124 chr2R 21103529 intron ktub + chr2R 21103591 intron ktub + chr2R 21103653 intron ktub + chr2R_6_21100001 chr2R_21100001 RAL-42 696 chr2R 21113459 21113476 chr2R 21113568 21113585 8 109 6.0 4.5 5.2 1.3 126 chr2R 21113459 intron ktub + chr2R 21113522 intron ktub + chr2R 21113585 intron ktub + chr2R_8_21110001 chr2R_21110001 RAL-42 697 chr2R 21136876 21136918 chr2R 21136980 21137022 12 104 1.0 2.0 1.5 4.8 146 chr2R 21136876 intron Magi - chr2R 21136949 intron Magi - chr2R 21137022 intron Magi - chr2R_12_21135001 chr2R_21135001 RAL-42 698 chr2R 21243017 21243046 chr2R 21243129 21243158 7 111 1.0 2.5 1.8 2.5 141 chr2R 21243017 intron ASPP - chr2R 21243088 intron ASPP - chr2R 21243158 intron ASPP - chr2R_7_21240001 chr2R_21240001 RAL-42 699 chr2R 21285413 21285436 chr2R 21285510 21285533 12 97 9.5 9.0 9.2 1.2 120 chr2R 21285413 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285473 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285533 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_12_21285001 chr2R_21285001 RAL-42 700 chr2R 21363122 21363185 chr2R 21363240 21363294 5 114 0.0 0.0 0.0 5.0 172 chr2R 21363122 intron cv-2 - chr2R 21363208 intron cv-2 - chr2R 21363294 intron cv-2 - chr2R_5_21360001 chr2R_21360001 RAL-42 701 chr2R 21408382 21408401 chr2R 21408494 21408513 6 112 3.0 0.0 1.5 2.4 131 chr2R 21408382 intron Sdc - chr2R 21408448 intron Sdc - chr2R 21408513 intron Sdc - chr2R_6_21405001 chr2R_21405001 RAL-42 702 chr2R 21491272 21491294 chr2R 21491370 21491392 4 98 1.0 5.5 3.2 1.0 120 chr2R 21491272 intron Fkbp14 - chr2R 21491332 intron Fkbp14 - chr2R 21491392 intron Fkbp14 - chr2R_4_21490001 chr2R_21490001 RAL-42 703 chr2R 21721560 21721602 chr2R 21721668 21721669 8 100 7.0 0.0 3.5 1.8 109 chr2R 21721560 intron LBR + chr2R 21721614 intron LBR + chr2R 21721669 intron LBR + chr2R_8_21720001 chr2R_21720001 RAL-42 704 chr2R 21721603 21721611 chr2R 21721666 21721718 4 93 6.5 0.0 3.2 1.0 115 chr2R 21721603 intron LBR + chr2R 21721660 intron LBR + chr2R 21721718 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-42 705 chr2R 21753066 21753115 chr2R 21753570 21753610 roo 6 503 2.0 4.5 3.2 1.4 544 chr2R 21753066 intergenic not near genes chr2R 21753338 intergenic not near genes chr2R 21753610 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-42 706 chr2R 21777421 21777446 chr2R 21777524 21777549 4 103 1.0 3.0 2.0 1.3 128 chr2R 21777421 intergenic not near genes chr2R 21777485 intergenic not near genes chr2R 21777549 intergenic not near genes chr2R_4_21775001 chr2R_21775001 RAL-42 707 chr2R 21809522 21809550 chr2R 21817782 21817810 roo 4 8260 5.0 4.0 4.5 0.7 8288 chr2R 21809522 intergenic not near genes chr2R 21813666 intergenic not near genes chr2R 21817810 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-42 708 chr2R 21886126 21886158 chr2R 21886225 21886236 6 95 3.0 0.0 1.5 2.4 110 chr2R 21886126 intron Fili + chr2R 21886181 intron Fili + chr2R 21886236 intron Fili + chr2R_6_21885001 chr2R_21885001 RAL-42 709 chr2R 21903845 21903869 chr2R 21903947 21903971 9 101 1.5 3.0 2.2 2.8 126 chr2R 21903845 intron Fili + chr2R 21903908 intron Fili + chr2R 21903971 intron Fili + chr2R_9_21900001 chr2R_21900001 RAL-42 710 chr2R 21916088 21916101 chr2R 21916185 21916198 4 97 0.5 0.0 0.2 3.3 110 chr2R 21916088 intron Fili + chr2R 21916143 intron Fili + chr2R 21916198 intron Fili + chr2R_4_21915001 chr2R_21915001 RAL-42 711 chr2R 21924937 21924979 chr2R 21925039 21925070 4 99 2.0 2.0 2.0 1.3 133 chr2R 21924937 intron Fili + chr2R 21925004 intron Fili + chr2R 21925070 intron Fili + chr2R_4_21925001 chr2R_21925001 RAL-42 712 chr2R 21932242 21932273 chr2R 21932339 21932366 9 94 1.0 3.5 2.2 2.8 124 chr2R 21932242 intron Fili + chr2R 21932304 intron Fili + chr2R 21932366 intron Fili + chr2R_9_21930001 chr2R_21930001 RAL-42 713 chr2R 21992398 21992426 chr2R 21992495 21992523 7 97 0.0 5.5 2.8 1.8 125 chr2R 21992398 intron CG34370 - chr2R 21992460 intron CG34370 - chr2R 21992523 intron CG34370 - chr2R_7_21990001 chr2R_21990001 RAL-42 714 chr2R 22004279 22004320 chr2R 22004393 22004434 11 112 5.0 3.0 4.0 2.2 155 chr2R 22004279 intron CG34370 - chr2R 22004356 intron CG34370 - chr2R 22004434 intron CG34370 - chr2R_11_22000001 chr2R_22000001 RAL-42 715 chr2R 22029506 22029530 chr2R 22029604 22029628 8 98 1.5 0.0 0.8 4.4 122 chr2R 22029506 intron CG34370 - chr2R 22029567 intron CG34370 - chr2R 22029628 intron CG34370 - chr2R_8_22025001 chr2R_22025001 RAL-42 716 chr2R 22037761 22037800 chr2R 22037863 22037902 8 102 4.0 0.0 2.0 2.7 141 chr2R 22037761 intron CG34370 - chr2R 22037832 intron CG34370 - chr2R 22037902 intron CG34370 - chr2R_8_22035001 chr2R_22035001 RAL-42 717 chr2R 22072684 22072713 chr2R 22072789 22072818 13 103 4.5 2.0 3.2 3.1 134 chr2R 22072684 intron CG11474 - chr2R 22072751 intron CG11474 - chr2R 22072818 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-42 718 chr2R 22102102 22102159 chr2R 22102210 22102257 4 106 1.5 4.5 3.0 1.0 155 chr2R 22102102 intergenic not near genes chr2R 22102180 intergenic not near genes chr2R 22102257 intergenic not near genes chr2R_4_22100001 chr2R_22100001 RAL-42 719 chr2R 22185668 22185692 chr2R 22185787 22185811 9 119 5.0 2.0 3.5 2.0 143 chr2R 22185668 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185811 3` UTR MED16 + chr2R_9_22185001 chr2R_22185001 RAL-42 720 chr2R 22272061 22272101 chr2R 22272183 22272223 17 122 4.0 7.0 5.5 2.6 162 chr2R 22272061 intron dve + chr2R 22272142 intron dve + chr2R 22272223 intron dve + chr2R_17_22270001 chr2R_22270001 RAL-42 721 chr2R 22290058 22290080 chr2R 22290162 22290184 13 103 6.5 2.0 4.2 2.5 126 chr2R 22290058 intergenic not near genes chr2R 22290121 intergenic not near genes chr2R 22290184 intergenic not near genes chr2R_13_22290001 chr2R_22290001 RAL-42 722 chr2R 22297749 22297766 chr2R 22297861 22297878 4 112 4.0 4.0 4.0 0.8 129 chr2R 22297749 intergenic wdp - chr2R 22297814 intergenic wdp - chr2R 22297878 intergenic wdp - chr2R_4_22295001 chr2R_22295001 RAL-42 723 chr2R 22346992 22347041 chr2R 22347399 22347443 8 405 3.0 1.5 2.2 2.5 451 chr2R 22346992 intron Liprin-gamma - chr2R 22347218 intron Liprin-gamma - chr2R 22347443 intron Liprin-gamma - chr2R_8_22345001 chr2R_22345001 RAL-42 724 chr2R 22349701 22349717 chr2R 22351481 22351521 jockey 4 1791 3.0 7.5 5.2 0.6 1820 chr2R 22349701 intron Liprin-gamma - chr2R 22350611 intron Liprin-gamma - chr2R 22351521 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-42 725 chr2R 22360367 22360378 chr2R 22360820 22360831 jockey 5 453 9.0 2.5 5.8 0.7 464 chr2R 22360367 intron Liprin-gamma - chr2R 22360599 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-42 726 chr2R 22377785 22377835 chr2R 22377891 22377937 11 104 6.5 2.5 4.5 2.0 152 chr2R 22377785 3` UTR Rtf1 + chr2R 22377861 3` UTR Rtf1 + chr2R 22377937 3` UTR Rtf1 + chr2R_11_22375001 chr2R_22375001 RAL-42 727 chr2R 22453201 22453221 chr2R 22453324 22453343 8 123 0.0 2.0 1.0 4.0 142 chr2R 22453201 intergenic not near genes chr2R 22453272 intergenic not near genes chr2R 22453343 intergenic not near genes chr2R_8_22450001 chr2R_22450001 RAL-42 728 chr2R 22465299 22465323 chr2R 22465512 22465536 BS 10 213 2.5 2.5 2.5 2.9 237 chr2R 22465299 intron CG10384 + chr2R 22465418 intron CG10384 + chr2R 22465536 intron CG10384 + chr2R_10_22465001 chr2R_22465001 RAL-42 729 chr2R 22499858 22499873 chr2R 22499954 22499969 4 96 0.5 7.5 4.0 0.8 111 chr2R 22499858 intron px - chr2R 22499914 intron px - chr2R 22499969 intron px - chr2R_4_22495001 chr2R_22495001 RAL-42 730 chr2R 22503854 22503891 chr2R 22503969 22504006 26 114 0.0 10.0 5.0 4.3 152 chr2R 22503854 intron px - chr2R 22503930 intron px - chr2R 22504006 intron px - chr2R_26_22500001 chr2R_22500001 RAL-42 731 chr2R 22506697 22506727 chr2R 22506795 22506825 9 98 4.5 1.5 3.0 2.2 128 chr2R 22506697 intron px - chr2R 22506761 intron px - chr2R 22506825 intron px - chr2R_9_22505001 chr2R_22505001 RAL-42 732 chr2R 22545602 22545644 chr2R 22545701 22545743 14 99 4.5 3.0 3.8 2.9 141 chr2R 22545602 intron px - chr2R 22545672 intron px - chr2R 22545743 intron px - chr2R_14_22545001 chr2R_22545001 RAL-42 733 chr2R 22580436 22580445 chr2R 22586600 22586609 diver 4 6164 4.0 3.0 3.5 0.9 6173 chr2R 22580436 intron dnr1 - chr2R 22583522 intron dnr1 - chr2R 22586609 intron dnr1 - chr2R_4_22580001 chr2R_22580001 RAL-42 734 chr2R 22623431 22623473 chr2R 22623591 22623623 11 158 4.5 2.5 3.5 2.4 192 chr2R 22623431 intron CG33143 + chr2R 22623527 intron CG33143 + chr2R 22623623 intron CG33143 + chr2R_11_22620001 chr2R_22620001 RAL-42 735 chr2R 22723215 22723260 chr2R 22723311 22723356 6 96 6.0 4.5 5.2 1.0 141 chr2R 22723215 intron jbug - chr2R 22723286 intron jbug - chr2R 22723356 intron jbug - chr2R_6_22720001 chr2R_22720001 RAL-42 736 chr2R 22729442 22729467 chr2R 22729670 22729695 INE-1 8 225 1.5 7.0 4.2 1.5 253 chr2R 22729442 intron jbug - chr2R 22729568 intron jbug - chr2R 22729695 intron jbug - chr2R_8_22725001 chr2R_22725001 RAL-42 737 chr2R 22756532 22756582 chr2R 22756629 22756679 15 96 4.5 4.0 4.2 2.9 147 chr2R 22756532 intron,intron CG42260 -,CR30267 + chr2R 22756606 intron,intron CG42260 -,CR30267 + chr2R 22756679 intron,intron CG42260 -,CR30267 + chr2R_15_22755001 chr2R_22755001 RAL-42 738 chr2R 22774954 22775000 chr2R 22775393 22775439 jockey 12 438 2.5 3.0 2.8 3.2 485 chr2R 22774954 intron CG42260 - chr2R 22775196 intron CG42260 - chr2R 22775439 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-42 739 chr2R 22785709 22785758 chr2R 22785807 22785856 10 97 2.5 2.0 2.2 3.1 147 chr2R 22785709 intron CG42260 - chr2R 22785782 intron CG42260 - chr2R 22785856 intron CG42260 - chr2R_10_22785001 chr2R_22785001 RAL-42 740 chr2R 22843007 22843047 chr2R 22844989 22845029 flea 17 1982 6.5 7.0 6.8 2.2 2022 chr2R 22843007 intergenic CG9826 + chr2R 22844018 intergenic not near genes chr2R 22845029 intergenic not near genes chr2R_17_22840001 chr2R_22840001 RAL-42 741 chr2R 22908458 22908477 chr2R 22908553 22908573 4 96 1.5 1.0 1.2 1.8 115 chr2R 22908458 intron nahoda + chr2R 22908516 intron nahoda + chr2R 22908573 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-42 742 chr2R 23041187 23041201 chr2R 23041282 23041299 6 98 4.0 4.0 4.0 1.2 112 chr2R 23041187 intron,intron twi +,CG42741 - chr2R 23041243 intron,intron twi +,CG42741 - chr2R 23041299 intron,intron twi +,CG42741 - chr2R_6_23040001 chr2R_23040001 RAL-42 743 chr2R 23084048 23084082 chr2R 23086898 23086933 15 2851 29.0 25.5 27.2 0.5 2885 chr2R 23084048 intergenic not near genes chr2R 23085490 intergenic CG9877 - chr2R 23086933 intergenic CG13538 + chr2R_15_23085001 chr2R_23085001 RAL-42 744 chr2R 23084013 23084063 chr2R 23087244 23087294 26 3231 31.0 32.0 31.5 0.8 3281 chr2R 23084013 intergenic not near genes chr2R 23085654 intergenic CG9877 - chr2R 23087294 exon CG13538 + chr2R_26_23085001 chr2R_23085001 RAL-42 745 chr2R 23131448 23131470 chr2R 23131559 23131581 5 111 7.5 4.5 6.0 0.7 133 chr2R 23131448 intergenic not near genes chr2R 23131514 intergenic not near genes chr2R 23131581 intergenic not near genes chr2R_5_23130001 chr2R_23130001 RAL-42 746 chr2R 23158327 23158353 chr2R 23158424 23158431 6 94 7.0 7.5 7.2 0.7 104 chr2R 23158327 intron CG9899 + chr2R 23158379 intron CG9899 + chr2R 23158431 intron CG9899 + chr2R_6_23155001 chr2R_23155001 RAL-42 747 chr2R 23291310 23291327 chr2R 23291406 23291425 4 98 5.0 0.5 2.8 1.1 115 chr2R 23291310 3` UTR CR44783 - chr2R 23291368 3` UTR CR44783 - chr2R 23291425 intergenic CR44783 - chr2R_4_23290001 chr2R_23290001 RAL-42 748 chr2R 23319547 23319588 chr2R 23319669 23319706 4 114 2.0 3.5 2.8 1.1 159 chr2R 23319547 intergenic CG30412 - chr2R 23319626 intergenic CG30412 - chr2R 23319706 intergenic CG30412 - chr2R_4_23315001 chr2R_23315001 RAL-42 749 chr2R 23350515 23350535 chr2R 23350653 23350676 4 140 2.0 2.5 2.2 1.2 161 chr2R 23350515 intergenic not near genes chr2R 23350596 intergenic not near genes chr2R 23350676 intergenic not near genes chr2R_4_23350001 chr2R_23350001 RAL-42 750 chr2R 23356257 23356308 chr2R 23356366 23356417 14 106 6.0 3.5 4.8 2.4 160 chr2R 23356257 3` UTR Rpi + chr2R 23356337 3` UTR Rpi + chr2R 23356417 3` UTR,3` UTR Rpi +,CG3500 - chr2R_14_23355001 chr2R_23355001 RAL-42 751 chr2R 23402591 23402637 chr2R 23407687 23407698 flea 19 5090 3.5 10.5 7.0 2.4 5107 chr2R 23402591 intergenic CG3520 - chr2R 23405144 intergenic not near genes chr2R 23407698 intergenic not near genes chr2R_19_23405001 chr2R_23405001 RAL-42 752 chr2R 23433020 23433048 chr2R 23433102 23433146 4 86 1.0 2.0 1.5 1.6 126 chr2R 23433020 intron CG9815 - chr2R 23433083 intron CG9815 - chr2R 23433146 intron CG9815 - chr2R_4_23430001 chr2R_23430001 RAL-42 753 chr2R 23457832 23457879 chr2R 23458039 23458086 22 204 4.0 5.0 4.5 4.0 254 chr2R 23457832 exon CG43795 + chr2R 23457959 intron CG43795 + chr2R 23458086 intron,3` UTR CG43795 +,skpF - chr2R_22_23455001 chr2R_23455001 RAL-42 754 chr2R 23496726 23496767 chr2R 23497081 23497122 12 354 2.0 2.0 2.0 4.0 396 chr2R 23496726 intergenic not near genes chr2R 23496924 intergenic not near genes chr2R 23497122 intergenic not near genes chr2R_12_23495001 chr2R_23495001 RAL-42 755 chr2R 23508899 23508945 chr2R 23509036 23509082 9 137 3.0 5.0 4.0 1.8 183 chr2R 23508899 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509082 intergenic not near genes chr2R_9_23505001 chr2R_23505001 RAL-42 756 chr2R 23518174 23518209 chr2R 23518272 23518306 4 98 2.5 1.5 2.0 1.3 132 chr2R 23518174 intergenic not near genes chr2R 23518240 intergenic not near genes chr2R 23518306 intergenic not near genes chr2R_4_23515001 chr2R_23515001 RAL-42 757 chr2R 23563885 23563920 chr2R 23563985 23564020 11 98 3.0 9.5 6.2 1.5 135 chr2R 23563885 3` UTR Pi3K59F + chr2R 23563952 3` UTR Pi3K59F + chr2R 23564020 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_11_23560001 chr2R_23560001 RAL-42 758 chr2R 23607020 23607193 chr2R 23607118 23607306 12 103 1.5 2.0 1.8 4.3 286 chr2R 23607020 intron CG17664 - chr2R 23607163 intron CG17664 - chr2R 23607306 intron CG17664 - chr2R_12_23605001 chr2R_23605001 RAL-42 759 chr2R 23914283 23914331 chr2R 23921926 23921975 412 10 7637 3.0 4.0 3.5 2.2 7692 chr2R 23914283 exon kcc + chr2R 23918129 intron kcc + chr2R 23921975 exon kcc + chr2R_10_23915001 chr2R_23915001 RAL-42 760 chr2R 23926818 23926860 chr2R 23926920 23926941 9 99 1.5 8.0 4.8 1.6 123 chr2R 23926818 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926880 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926941 3` UTR Ca-P60A - chr2R_9_23925001 chr2R_23925001 RAL-42 761 chr2R 23986495 23986547 chr2R 23986595 23986646 20 99 2.0 6.0 4.0 4.0 151 chr2R 23986495 intron Phm - chr2R 23986570 intron Phm - chr2R 23986646 intron,5` UTR Phm -,CG30178 + chr2R_20_23985001 chr2R_23985001 RAL-42 762 chr2R 24147056 24147091 chr2R 24154646 24154664 412 5 7579 3.5 4.0 3.8 1.0 7608 chr2R 24147056 intron Dat + chr2R 24150860 intron Dat + chr2R 24154664 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-42 763 chr2R 24177218 24177261 chr2R 24184723 24184766 412 12 7505 6.5 6.5 6.5 1.6 7548 chr2R 24177218 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184766 3` UTR Nop60B + chr2R_12_24180001 chr2R_24180001 RAL-42 764 chr2R 24353411 24353434 chr2R 24361792 24361816 roo 6 8382 12.5 5.5 9.0 0.6 8405 chr2R 24353411 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361816 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-42 765 chr2R 24383806 24383856 chr2R 24383907 24383947 14 100 7.0 1.5 4.2 2.7 141 chr2R 24383806 intron mAChR-A - chr2R 24383876 intron mAChR-A - chr2R 24383947 exon mAChR-A - chr2R_14_24380001 chr2R_24380001 RAL-42 766 chr2R 24415299 24415310 chr2R 24415404 24415415 5 105 13.5 7.0 10.2 0.4 116 chr2R 24415299 intergenic CG45068 +,CG45069 +,prom - chr2R 24415357 intergenic prom -,CG45068 +,CG45069 + chr2R 24415415 3` UTR prom - chr2R_5_24415001 chr2R_24415001 RAL-42 767 chr2R 24415313 24415348 chr2R 24415402 24415453 18 104 3.5 6.5 5.0 3.0 140 chr2R 24415313 intergenic CG45068 +,CG45069 +,prom - chr2R 24415383 intergenic prom -,CG45068 +,CG45069 + chr2R 24415453 3` UTR prom - chr2R_18_24415001 chr2R_24415001 RAL-42 768 chr2R 24430700 24430947 chr2R 24430854 24431055 5 126 0.0 0.0 0.0 5.0 355 chr2R 24430700 intergenic CG15873 - chr2R 24430878 intergenic CG15873 -,Pgam5-2 - chr2R 24431055 intergenic Pgam5-2 -,CG15873 - chr2R_5_24430001 chr2R_24430001 RAL-42 769 chr2R 24487241 24487289 chr2R 24487449 24487487 14 203 34.0 43.5 38.8 0.4 246 chr2R 24487241 intron CG13579 + chr2R 24487364 intron CG13579 + chr2R 24487487 intron CG13579 + chr2R_14_24485001 chr2R_24485001 RAL-42 770 chr2R 24633995 24634023 chr2R 24634078 24634123 5 82 2.0 2.0 2.0 1.7 128 chr2R 24633995 intron CG13594 - chr2R 24634059 intron CG13594 - chr2R 24634123 intron CG13594 - chr2R_5_24630001 chr2R_24630001 RAL-42 771 chr2R 24647558 24647568 chr2R 24655148 24655149 412 4 7587 2.5 5.0 3.8 0.8 7591 chr2R 24647558 intergenic not near genes chr2R 24651354 intergenic not near genes chr2R 24655149 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-42 772 chr2R 24727900 24727915 chr2R 24735393 24735443 mdg1 6 7517 1.0 5.0 3.0 1.5 7543 chr2R 24727900 intron Mid1 - chr2R 24731672 intron Mid1 - chr2R 24735443 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-42 773 chr2R 24884030 24884079 chr2R 24884132 24884181 14 102 3.0 7.5 5.2 2.3 151 chr2R 24884030 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884181 intron NKAIN + chr2R_14_24880001 chr2R_24880001 RAL-42 774 chr2R 25014524 25014572 chr2R 25014619 25014667 8 93 3.0 1.5 2.2 2.5 143 chr2R 25014524 intron uzip + chr2R 25014596 intron uzip + chr2R 25014667 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-42 775 chr2R 25105467 25105509 chr2R 25105590 25105632 4 122 1.5 1.0 1.2 1.8 165 chr2R 25105467 intron lov - chr2R 25105550 intron lov - chr2R 25105632 intron lov - chr2R_4_25105001 chr2R_25105001 RAL-42 776 chr3L 110192 110242 chr3L 119378 119418 roo 9 9183 4.5 2.0 3.2 2.1 9226 chr3L 110192 intergenic not near genes chr3L 114805 intergenic not near genes chr3L 119418 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-42 777 chr3L 217658 217692 chr3L 217751 217770 5 91 1.0 4.0 2.5 1.4 112 chr3L 217658 exon Kaz1-ORFB + chr3L 217714 exon Kaz1-ORFB + chr3L 217770 exon Kaz1-ORFB + chr3L_5_215001 chr3L_215001 RAL-42 778 chr3L 402683 402709 chr3L 409755 409782 297 6 7069 4.0 7.5 5.8 0.9 7099 chr3L 402683 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409782 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-42 779 chr3L 445529 445566 chr3L 445625 445662 6 96 0.5 0.5 0.5 4.0 133 chr3L 445529 exon klar - chr3L 445596 intron klar - chr3L 445662 intron klar - chr3L_6_445001 chr3L_445001 RAL-42 780 chr3L 478029 478068 chr3L 478125 478166 9 97 5.0 3.5 4.2 1.7 137 chr3L 478029 intron klar - chr3L 478098 intron klar - chr3L 478166 intron klar - chr3L_9_475001 chr3L_475001 RAL-42 781 chr3L 563955 563992 chr3L 564154 564187 7 197 1.0 2.5 1.8 2.5 232 chr3L 563955 intron hipk + chr3L 564071 intron hipk + chr3L 564187 intron hipk + chr3L_7_560001 chr3L_560001 RAL-42 782 chr3L 611327 611378 chr3L 611429 611481 16 103 6.5 7.5 7.0 2.0 154 chr3L 611327 intergenic not near genes chr3L 611404 intergenic not near genes chr3L 611481 intergenic not near genes chr3L_16_610001 chr3L_610001 RAL-42 783 chr3L 649693 649736 chr3L 649805 649848 10 112 3.0 4.0 3.5 2.2 155 chr3L 649693 intron Gale + chr3L 649770 intron Gale + chr3L 649848 intron Gale + chr3L_10_645001 chr3L_645001 RAL-42 784 chr3L 665850 665881 chr3L 665952 665984 11 103 6.0 5.5 5.8 1.6 134 chr3L 665850 intergenic not near genes chr3L 665917 intergenic not near genes chr3L 665984 intergenic not near genes chr3L_11_665001 chr3L_665001 RAL-42 785 chr3L 705880 705929 chr3L 705996 706045 22 116 4.5 7.0 5.8 3.2 165 chr3L 705880 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706045 3` UTR CG13895 - chr3L_22_705001 chr3L_705001 RAL-42 786 chr3L 746489 746517 chr3L 746593 746622 4 104 5.0 3.5 4.2 0.8 133 chr3L 746489 intron hng3 - chr3L 746556 intron hng3 - chr3L 746622 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-42 787 chr3L 821064 821083 chr3L 821161 821180 10 97 4.0 4.0 4.0 2.0 116 chr3L 821064 5` UTR CR43883 + chr3L 821122 5` UTR CR43883 + chr3L 821180 5` UTR CR43883 + chr3L_10_820001 chr3L_820001 RAL-42 788 chr3L 827508 827562 chr3L 827604 827658 20 96 5.5 4.0 4.8 3.4 150 chr3L 827508 intron,intron CG13900 -,CR45184 - chr3L 827583 intron,intron,3` UTR CG13900 -,CR45184 -,snoRNA:Me28S-G3113b - chr3L 827658 3` UTR,3` UTR CG13900 -,CR45184 - chr3L_20_825001 chr3L_825001 RAL-42 789 chr3L 925157 925209 chr3L 932603 932655 mdg1 18 7445 3.5 5.5 4.5 3.3 7498 chr3L 925157 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932655 intron Glut1 + chr3L_18_925001 chr3L_925001 RAL-42 790 chr3L 939762 939788 chr3L 940892 940929 jockey 9 1139 2.5 6.5 4.5 1.6 1167 chr3L 939762 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940929 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-42 791 chr3L 961007 961039 chr3L 961120 961152 10 113 3.5 7.0 5.2 1.6 145 chr3L 961007 intron Glut1 + chr3L 961080 intron Glut1 + chr3L 961152 intron Glut1 + chr3L_10_960001 chr3L_960001 RAL-42 792 chr3L 974585 974623 chr3L 975202 975240 7 617 5.5 3.0 4.2 1.3 655 chr3L 974585 intron Glut1 + chr3L 974912 intron Glut1 + chr3L 975240 intron Glut1 + chr3L_7_970001 chr3L_970001 RAL-42 793 chr3L 1103976 1104007 chr3L 1104182 1104218 4 210 3.5 3.5 3.5 0.9 242 chr3L 1103976 intergenic not near genes chr3L 1104097 intergenic not near genes chr3L 1104218 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-42 794 chr3L 1194527 1194534 chr3L 1194642 1194649 7 115 11.0 10.5 10.8 0.6 122 chr3L 1194527 intergenic LysX - chr3L 1194588 intergenic LysX - chr3L 1194649 intergenic LysX - chr3L_7_1190001 chr3L_1190001 RAL-42 795 chr3L 1219587 1219604 chr3L 1227332 1227355 412 5 7747 1.5 1.5 1.5 2.0 7768 chr3L 1219587 intron mwh + chr3L 1223471 intron mwh + chr3L 1227355 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-42 796 chr3L 1219605 1219612 chr3L 1227327 1227365 412 4 7745 1.5 1.5 1.5 1.6 7760 chr3L 1219605 intron mwh + chr3L 1223485 intron mwh + chr3L 1227365 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-42 797 chr3L 1361293 1361322 chr3L 1361369 1361388 5 79 3.0 3.0 3.0 1.2 95 chr3L 1361293 intron Ptp61F - chr3L 1361340 intron Ptp61F - chr3L 1361388 intron Ptp61F - chr3L_5_1360001 chr3L_1360001 RAL-42 798 chr3L 1374416 1374463 chr3L 1374513 1374514 5 81 7.5 5.0 6.2 0.7 98 chr3L 1374416 intron,intron Ptp61F -,ru + chr3L 1374465 intron,intron Ptp61F -,ru + chr3L 1374514 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-42 799 chr3L 1396727 1396745 chr3L 1396826 1396849 5 103 1.0 4.5 2.8 1.3 122 chr3L 1396727 intron Ptp61F - chr3L 1396788 intron Ptp61F - chr3L 1396849 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-42 800 chr3L 1479566 1479609 chr3L 1479862 1479897 5 293 1.0 1.5 1.2 2.3 331 chr3L 1479566 intron stet - chr3L 1479732 intron stet - chr3L 1479897 intron stet - chr3L_5_1475001 chr3L_1475001 RAL-42 801 chr3L 1505981 1506027 chr3L 1513598 1513644 17.6 13 7616 7.0 4.0 5.5 2.0 7663 chr3L 1505981 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513644 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-42 802 chr3L 1529777 1529791 chr3L 1529871 1529883 8 94 6.5 5.5 6.0 1.1 106 chr3L 1529777 intron,exon CG12090 -,Ir62a - chr3L 1529830 intron,exon CG12090 -,Ir62a - chr3L 1529883 intron,exon CG12090 -,Ir62a - chr3L_8_1525001 chr3L_1525001 RAL-42 803 chr3L 1569502 1569531 chr3L 1569598 1569625 4 95 2.5 4.0 3.2 1.0 123 chr3L 1569502 5` UTR CG12004 + chr3L 1569564 intron CG12004 + chr3L 1569625 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-42 804 chr3L 1740855 1740883 chr3L 1741109 1741146 pogo 9 261 7.5 4.5 6.0 1.3 291 chr3L 1740855 intron Gk + chr3L 1741000 intron Gk + chr3L 1741146 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-42 805 chr3L 1805678 1805703 chr3L 1805872 1805897 8 194 4.5 4.0 4.2 1.5 219 chr3L 1805678 exon CG42676 + chr3L 1805788 intron CG42676 + chr3L 1805897 intron CG42676 + chr3L_8_1805001 chr3L_1805001 RAL-42 806 chr3L 1809989 1810028 chr3L 1810199 1810238 5 210 4.5 6.0 5.2 0.8 249 chr3L 1809989 intergenic not near genes chr3L 1810114 intergenic GV1 + chr3L 1810238 intergenic GV1 + chr3L_5_1810001 chr3L_1810001 RAL-42 807 chr3L 1853026 1853043 chr3L 1853130 1853147 4 104 2.5 3.5 3.0 1.0 121 chr3L 1853026 intron CG13936 - chr3L 1853086 intron CG13936 - chr3L 1853147 intron CG13936 - chr3L_4_1850001 chr3L_1850001 RAL-42 808 chr3L 1988846 1988863 chr3L 1989045 1989059 5 198 0.5 2.5 1.5 2.0 213 chr3L 1988846 intergenic not near genes chr3L 1988952 intergenic not near genes chr3L 1989059 intergenic not near genes chr3L_5_1985001 chr3L_1985001 RAL-42 809 chr3L 2033414 2033457 chr3L 2033519 2033558 9 102 2.0 2.5 2.2 2.8 144 chr3L 2033414 intergenic not near genes chr3L 2033486 intergenic not near genes chr3L 2033558 intergenic not near genes chr3L_9_2030001 chr3L_2030001 RAL-42 810 chr3L 2108234 2108282 chr3L 2113458 2113506 copia 29 5224 6.5 8.0 7.2 3.5 5272 chr3L 2108234 intron sls - chr3L 2110870 intron sls - chr3L 2113506 intron sls - chr3L_29_2110001 chr3L_2110001 RAL-42 811 chr3L 2139187 2139234 chr3L 2139288 2139335 11 98 2.0 4.5 3.2 2.6 148 chr3L 2139187 intron zormin - chr3L 2139261 intron zormin - chr3L 2139335 intron zormin - chr3L_11_2135001 chr3L_2135001 RAL-42 812 chr3L 2199792 2199799 chr3L 2199888 2199891 6 94 0.5 4.5 2.5 1.7 99 chr3L 2199792 intergenic not near genes chr3L 2199842 intergenic not near genes chr3L 2199891 intergenic not near genes chr3L_6_2195001 chr3L_2195001 RAL-42 813 chr3L 2199805 2199817 chr3L 2199885 2199913 4 92 0.0 3.0 1.5 1.6 108 chr3L 2199805 intergenic not near genes chr3L 2199859 intergenic not near genes chr3L 2199913 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-42 814 chr3L 2302565 2302599 chr3L 2302665 2302682 8 103 2.5 2.0 2.2 2.5 117 chr3L 2302565 intergenic not near genes chr3L 2302624 intergenic not near genes chr3L 2302682 intergenic not near genes chr3L_8_2300001 chr3L_2300001 RAL-42 815 chr3L 2307982 2308024 chr3L 2308108 2308150 6 122 5.5 1.0 3.2 1.4 168 chr3L 2307982 intergenic not near genes chr3L 2308066 intergenic not near genes chr3L 2308150 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-42 816 chr3L 2320358 2320413 chr3L 2320463 2320516 14 99 3.0 4.0 3.5 3.1 158 chr3L 2320358 intergenic CR45426 - chr3L 2320437 intergenic not near genes chr3L 2320516 intergenic not near genes chr3L_14_2320001 chr3L_2320001 RAL-42 817 chr3L 2331565 2331611 chr3L 2331662 2331692 7 95 2.0 3.5 2.8 1.8 127 chr3L 2331565 intron MsR1 + chr3L 2331628 intron MsR1 + chr3L 2331692 intron MsR1 + chr3L_7_2330001 chr3L_2330001 RAL-42 818 chr3L 2446734 2446771 chr3L 2446840 2446876 5 103 2.5 1.0 1.8 1.8 142 chr3L 2446734 intron CG45186 + chr3L 2446805 intron CG45186 + chr3L 2446876 intron CG45186 + chr3L_5_2445001 chr3L_2445001 RAL-42 819 chr3L 2518229 2518261 chr3L 2518329 2518361 7 100 1.5 2.5 2.0 2.3 132 chr3L 2518229 intron,intron Spn -,CR45170 + chr3L 2518295 intron,intron Spn -,CR45170 + chr3L 2518361 intron,5` UTR Spn -,CR45170 + chr3L_7_2515001 chr3L_2515001 RAL-42 820 chr3L 2561506 2561561 chr3L 2561603 2561658 14 96 5.5 8.5 7.0 1.8 152 chr3L 2561506 intron msn - chr3L 2561582 intron msn - chr3L 2561658 intron msn - chr3L_14_2560001 chr3L_2560001 RAL-42 821 chr3L 2683927 2683975 chr3L 2684023 2684071 12 96 3.0 3.5 3.2 2.9 144 chr3L 2683927 intron Fife - chr3L 2683999 intron Fife - chr3L 2684071 intron Fife - chr3L_12_2680001 chr3L_2680001 RAL-42 822 chr3L 2719515 2719560 chr3L 2719637 2719682 10 122 5.0 6.0 5.5 1.5 167 chr3L 2719515 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719682 3` UTR Mrtf - chr3L_10_2715001 chr3L_2715001 RAL-42 823 chr3L 2751442 2751450 chr3L 2755757 2755765 F-element 4 4315 9.0 4.5 6.8 0.5 4323 chr3L 2751442 intron Mrtf - chr3L 2753604 intron Mrtf - chr3L 2755765 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-42 824 chr3L 2795705 2795744 chr3L 2795848 2795887 11 143 2.0 1.5 1.8 3.9 182 chr3L 2795705 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795887 intron CG43444 - chr3L_11_2795001 chr3L_2795001 RAL-42 825 chr3L 2899554 2899607 chr3L 2899687 2899740 15 132 2.0 2.5 2.2 4.7 186 chr3L 2899554 intron Shab + chr3L 2899647 intron Shab + chr3L 2899740 intron Shab + chr3L_15_2895001 chr3L_2895001 RAL-42 826 chr3L 2904438 2904489 chr3L 2904542 2904593 8 104 3.0 2.5 2.8 2.1 155 chr3L 2904438 intron Shab + chr3L 2904516 intron Shab + chr3L 2904593 intron Shab + chr3L_8_2900001 chr3L_2900001 RAL-42 827 chr3L 2927843 2927870 chr3L 2936120 2936166 Tirant 7 8291 3.0 2.0 2.5 2.0 8323 chr3L 2927843 intron Shab + chr3L 2932004 intron Shab + chr3L 2936166 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-42 828 chr3L 3040307 3040330 chr3L 3042116 3042138 S-element 4 1807 8.5 2.5 5.5 0.6 1831 chr3L 3040307 3` UTR CG2162 + chr3L 3041222 intergenic not near genes chr3L 3042138 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-42 829 chr3L 3050876 3050884 chr3L 3050983 3050988 5 106 5.5 1.0 3.2 1.2 112 chr3L 3050876 intron CG32485 + chr3L 3050932 intron CG32485 + chr3L 3050988 intron CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-42 830 chr3L 3051728 3051749 chr3L 3051990 3052011 pogo 10 262 9.0 4.5 6.8 1.3 283 chr3L 3051728 3` UTR CG32485 + chr3L 3051870 intergenic CG32485 + chr3L 3052011 intergenic CG32485 + chr3L_10_3050001 chr3L_3050001 RAL-42 831 chr3L 3084465 3084506 chr3L 3084567 3084608 13 102 3.5 4.0 3.8 2.7 143 chr3L 3084465 intron CG11486 + chr3L 3084536 intron CG11486 + chr3L 3084608 intron CG11486 + chr3L_13_3080001 chr3L_3080001 RAL-42 832 chr3L 3252325 3252375 chr3L 3252419 3252471 4 96 4.0 0.0 2.0 1.3 146 chr3L 3252325 5` UTR CR43626 + chr3L 3252398 5` UTR CR43626 + chr3L 3252471 5` UTR CR43626 + chr3L_4_3250001 chr3L_3250001 RAL-42 833 chr3L 3317511 3317566 chr3L 3317610 3317665 19 97 0.0 3.0 1.5 7.6 154 chr3L 3317511 intergenic Drsl5 + chr3L 3317588 intergenic PIG-C -,Drsl5 + chr3L 3317665 intergenic PIG-C - chr3L_19_3315001 chr3L_3315001 RAL-42 834 chr3L 3436269 3436313 chr3L 3436368 3436412 5 99 2.5 3.5 3.0 1.2 143 chr3L 3436269 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436412 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-42 835 chr3L 3470138 3470187 chr3L 3470234 3470283 20 95 0.5 3.5 2.0 6.7 145 chr3L 3470138 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470283 intron CG14971 - chr3L_20_3470001 chr3L_3470001 RAL-42 836 chr3L 3512945 3512967 chr3L 3513045 3513067 8 100 4.0 5.5 4.8 1.4 122 chr3L 3512945 intergenic ImpE2 - chr3L 3513006 intergenic ImpE2 - chr3L 3513067 intergenic ImpE2 - chr3L_8_3510001 chr3L_3510001 RAL-42 837 chr3L 3601290 3601318 chr3L 3606611 3606643 copia 8 5329 2.0 1.5 1.8 2.9 5353 chr3L 3601290 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-42 838 chr3L 3627217 3627260 chr3L 3627342 3627385 11 125 2.5 1.5 2.0 3.7 168 chr3L 3627217 intron dar1 + chr3L 3627301 intron dar1 + chr3L 3627385 intron dar1 + chr3L_11_3625001 chr3L_3625001 RAL-42 839 chr3L 3700084 3700135 chr3L 3700187 3700238 8 103 2.5 1.0 1.8 2.9 154 chr3L 3700084 intergenic not near genes chr3L 3700161 intergenic not near genes chr3L 3700238 intergenic not near genes chr3L_8_3700001 chr3L_3700001 RAL-42 840 chr3L 3766727 3766745 chr3L 3766833 3766851 5 106 6.5 0.0 3.2 1.2 124 chr3L 3766727 intron CG32264 - chr3L 3766789 intron CG32264 - chr3L 3766851 intron CG32264 - chr3L_5_3765001 chr3L_3765001 RAL-42 841 chr3L 3797223 3797231 chr3L 3797326 3797333 4 102 1.5 8.0 4.8 0.7 110 chr3L 3797223 intron CG32264 - chr3L 3797278 intron CG32264 - chr3L 3797333 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-42 842 chr3L 3797235 3797256 chr3L 3797324 3797357 9 101 1.5 6.5 4.0 1.8 122 chr3L 3797235 intron CG32264 - chr3L 3797296 intron CG32264 - chr3L 3797357 intron CG32264 - chr3L_9_3795001 chr3L_3795001 RAL-42 843 chr3L 3803582 3803603 chr3L 3803670 3803700 5 92 0.0 0.5 0.2 4.2 118 chr3L 3803582 intron CG32264 - chr3L 3803641 intron CG32264 - chr3L 3803700 intron CG32264 - chr3L_5_3800001 chr3L_3800001 RAL-42 844 chr3L 3833717 3833755 chr3L 3833978 3834016 pogo 9 261 9.0 6.5 7.8 1.0 299 chr3L 3833717 intron enc + chr3L 3833866 intron enc + chr3L 3834016 intron enc + chr3L_9_3830001 chr3L_3830001 RAL-42 845 chr3L 3877427 3877443 chr3L 3877575 3877591 4 148 1.5 4.0 2.8 1.1 164 chr3L 3877427 intergenic not near genes chr3L 3877509 intergenic not near genes chr3L 3877591 intergenic not near genes chr3L_4_3875001 chr3L_3875001 RAL-42 846 chr3L 3890948 3890985 chr3L 3891049 3891086 4 101 2.5 0.0 1.2 1.8 138 chr3L 3890948 intergenic not near genes chr3L 3891017 intergenic not near genes chr3L 3891086 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-42 847 chr3L 3940785 3940822 chr3L 3940891 3940939 4 114 4.0 0.0 2.0 1.3 154 chr3L 3940785 intron CR43916 + chr3L 3940862 intron CR43916 + chr3L 3940939 intron CR43916 + chr3L_4_3940001 chr3L_3940001 RAL-42 848 chr3L 4015724 4015760 chr3L 4015827 4015863 11 103 4.0 0.0 2.0 3.7 139 chr3L 4015724 intergenic not near genes chr3L 4015794 intergenic not near genes chr3L 4015863 intergenic not near genes chr3L_11_4015001 chr3L_4015001 RAL-42 849 chr3L 4052608 4052616 chr3L 4052742 4052750 4 134 6.0 3.5 4.8 0.7 142 chr3L 4052608 intron CG1136 + chr3L 4052679 intron CG1136 + chr3L 4052750 intron CG1136 + chr3L_4_4050001 chr3L_4050001 RAL-42 850 chr3L 4052619 4052642 chr3L 4052723 4052746 5 121 2.0 2.5 2.2 1.6 127 chr3L 4052619 intron CG1136 + chr3L 4052682 intron CG1136 + chr3L 4052746 intron CG1136 + chr3L_5_4050001 chr3L_4050001 RAL-42 851 chr3L 4170074 4170106 chr3L 4170263 4170295 8 189 3.5 1.5 2.5 2.3 221 chr3L 4170074 intergenic Ero1L + chr3L 4170184 intergenic Ero1L + chr3L 4170295 intergenic Ero1L + chr3L_8_4170001 chr3L_4170001 RAL-42 852 chr3L 4214518 4214548 chr3L 4214680 4214710 12 162 5.5 8.0 6.8 1.5 192 chr3L 4214518 intron CG43367 + chr3L 4214614 intron CG43367 + chr3L 4214710 intron CG43367 + chr3L_12_4210001 chr3L_4210001 RAL-42 853 chr3L 4246071 4246097 chr3L 4246170 4246196 10 99 8.5 8.0 8.2 1.1 125 chr3L 4246071 3` UTR pav + chr3L 4246134 3` UTR pav + chr3L 4246196 3` UTR pav + chr3L_10_4245001 chr3L_4245001 RAL-42 854 chr3L 4246098 4246114 chr3L 4246169 4246213 11 91 6.5 8.0 7.2 1.3 115 chr3L 4246098 3` UTR pav + chr3L 4246156 3` UTR pav + chr3L 4246213 3` UTR pav + chr3L_11_4245001 chr3L_4245001 RAL-42 855 chr3L 4342406 4342439 chr3L 4342488 4342538 8 88 3.5 3.5 3.5 1.8 132 chr3L 4342406 intron Cip4 - chr3L 4342472 intron Cip4 - chr3L 4342538 intron Cip4 - chr3L_8_4340001 chr3L_4340001 RAL-42 856 chr3L 4364177 4364221 chr3L 4364286 4364330 8 109 2.5 4.5 3.5 1.8 153 chr3L 4364177 intergenic Cip4 -,mRpS6 + chr3L 4364254 intergenic Cip4 -,mRpS6 + chr3L 4364330 intergenic mRpS6 +,Cip4 - chr3L_8_4360001 chr3L_4360001 RAL-42 857 chr3L 4390016 4390031 chr3L 4390115 4390122 4 97 4.0 2.0 3.0 1.0 106 chr3L 4390016 intron slow + chr3L 4390069 intron slow + chr3L 4390122 intron slow + chr3L_4_4390001 chr3L_4390001 RAL-42 858 chr3L 4638762 4638789 chr3L 4638874 4638908 6 118 1.5 2.5 2.0 2.0 146 chr3L 4638762 intron axo - chr3L 4638835 intron axo - chr3L 4638908 intron axo - chr3L_6_4635001 chr3L_4635001 RAL-42 859 chr3L 4676018 4676052 chr3L 4676119 4676152 11 101 7.5 2.5 5.0 1.8 134 chr3L 4676018 intron axo - chr3L 4676085 intron axo - chr3L 4676152 intron axo - chr3L_11_4675001 chr3L_4675001 RAL-42 860 chr3L 4699276 4699316 chr3L 4699376 4699416 8 100 4.5 4.0 4.2 1.5 140 chr3L 4699276 intron RhoGEF64C + chr3L 4699346 intron RhoGEF64C + chr3L 4699416 intron RhoGEF64C + chr3L_8_4695001 chr3L_4695001 RAL-42 861 chr3L 4837874 4837921 chr3L 4837973 4838020 17 99 5.5 6.5 6.0 2.4 146 chr3L 4837874 3` UTR CG13707 - chr3L 4837947 3` UTR CG13707 - chr3L 4838020 3` UTR CG13707 - chr3L_17_4835001 chr3L_4835001 RAL-42 862 chr3L 4858293 4858323 chr3L 4858395 4858433 5 108 6.0 4.5 5.2 0.8 140 chr3L 4858293 intergenic not near genes chr3L 4858363 intergenic not near genes chr3L 4858433 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-42 863 chr3L 4901112 4901160 chr3L 4907322 4907370 diver 8 6208 1.5 3.0 2.2 2.5 6258 chr3L 4901112 intergenic CG13704 + chr3L 4904241 intergenic not near genes chr3L 4907370 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-42 864 chr3L 4958439 4958442 chr3L 4958500 4958550 4 92 2.5 0.5 1.5 1.6 111 chr3L 4958439 intron Con - chr3L 4958494 intron Con - chr3L 4958550 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-42 865 chr3L 4967140 4967176 chr3L 4967251 4967291 11 121 2.0 1.0 1.5 4.4 151 chr3L 4967140 intron Con - chr3L 4967216 intron Con - chr3L 4967291 intron Con - chr3L_11_4965001 chr3L_4965001 RAL-42 866 chr3L 5030755 5030797 chr3L 5030851 5030893 11 96 5.5 5.5 5.5 1.7 138 chr3L 5030755 intron Con - chr3L 5030824 intron Con - chr3L 5030893 intron Con - chr3L_11_5030001 chr3L_5030001 RAL-42 867 chr3L 5034140 5034191 chr3L 5043312 5043363 roo 13 9167 3.5 3.5 3.5 2.9 9223 chr3L 5034140 intron Con - chr3L 5038752 intron Con - chr3L 5043363 intron Con - chr3L_13_5035001 chr3L_5035001 RAL-42 868 chr3L 5045443 5045479 chr3L 5050244 5050280 Doc 4 4801 1.5 4.0 2.8 1.1 4837 chr3L 5045443 intron Con - chr3L 5047862 intron Con - chr3L 5050280 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-42 869 chr3L 5104467 5104510 chr3L 5124621 5124664 15 20154 3.5 4.0 3.8 3.1 20197 chr3L 5104467 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124664 intergenic not near genes chr3L_15_5110001 chr3L_5110001 RAL-42 870 chr3L 5164617 5164667 chr3L 5164713 5164763 14 96 4.0 3.5 3.8 2.9 146 chr3L 5164617 intron shep - chr3L 5164690 intron shep - chr3L 5164763 intron shep - chr3L_14_5160001 chr3L_5160001 RAL-42 871 chr3L 5215261 5215311 chr3L 5215443 5215493 13 182 4.5 5.5 5.0 2.2 232 chr3L 5215261 intron shep - chr3L 5215377 intron shep - chr3L 5215493 intron shep - chr3L_13_5215001 chr3L_5215001 RAL-42 872 chr3L 5299159 5299176 chr3L 5306615 5306632 Quasimodo 5 7456 2.0 6.0 4.0 1.0 7473 chr3L 5299159 intergenic not near genes chr3L 5302896 intergenic not near genes chr3L 5306632 intergenic not near genes chr3L_5_5300001 chr3L_5300001 RAL-42 873 chr3L 5537706 5537751 chr3L 5538068 5538084 jockey 9 354 2.0 7.5 4.8 1.6 378 chr3L 5537706 intergenic not near genes chr3L 5537895 intergenic not near genes chr3L 5538084 intergenic CG10625 - chr3L_9_5535001 chr3L_5535001 RAL-42 874 chr3L 5563558 5563590 chr3L 5563660 5563660 7 93 4.5 6.5 5.5 1.1 102 chr3L 5563558 5` UTR Sucb - chr3L 5563609 5` UTR Sucb - chr3L 5563660 5` UTR Sucb - chr3L_7_5560001 chr3L_5560001 RAL-42 875 chr3L 5576985 5576989 chr3L 5577087 5577091 4 102 1.5 6.5 4.0 0.8 106 chr3L 5576985 intron Msr-110 - chr3L 5577038 intron Msr-110 - chr3L 5577091 intron Msr-110 - chr3L_4_5575001 chr3L_5575001 RAL-42 876 chr3L 5581450 5581493 chr3L 5581556 5581599 8 104 5.0 1.0 3.0 2.0 149 chr3L 5581450 intergenic not near genes chr3L 5581524 intergenic not near genes chr3L 5581599 intergenic not near genes chr3L_8_5580001 chr3L_5580001 RAL-42 877 chr3L 5784543 5784556 chr3L 5784653 5784661 5 109 6.0 7.0 6.5 0.7 118 chr3L 5784543 3` UTR,3` UTR,intron PGRP-LD +,Pmi +,Cralbp - chr3L 5784602 3` UTR,3` UTR,intron PGRP-LD +,Pmi +,Cralbp - chr3L 5784661 3` UTR,3` UTR,intron PGRP-LD +,Pmi +,Cralbp - chr3L_5_5780001 chr3L_5780001 RAL-42 878 chr3L 5827900 5827951 chr3L 5828015 5828065 8 114 2.0 5.5 3.8 1.7 165 chr3L 5827900 intron vn - chr3L 5827982 intron vn - chr3L 5828065 intron vn - chr3L_8_5825001 chr3L_5825001 RAL-42 879 chr3L 5908063 5908106 chr3L 5908163 5908206 12 100 0.0 3.0 1.5 4.8 143 chr3L 5908063 intron CG13288 + chr3L 5908134 intron CG13288 + chr3L 5908206 intron CG13288 + chr3L_12_5905001 chr3L_5905001 RAL-42 880 chr3L 5910015 5910062 chr3L 5910276 5910323 pogo 22 261 4.5 7.0 5.8 3.2 308 chr3L 5910015 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910323 intron CG13288 + chr3L_22_5910001 chr3L_5910001 RAL-42 881 chr3L 5926298 5926349 chr3L 5926508 5926538 BS 13 199 4.5 2.0 3.2 3.1 240 chr3L 5926298 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_13_5925001 chr3L_5925001 RAL-42 882 chr3L 5992580 5992619 chr3L 5992702 5992741 10 122 3.0 3.0 3.0 2.5 161 chr3L 5992580 intergenic not near genes chr3L 5992660 intergenic not near genes chr3L 5992741 intergenic not near genes chr3L_10_5990001 chr3L_5990001 RAL-42 883 chr3L 6001671 6001704 chr3L 6004391 6004424 jockey 5 2720 1.0 1.5 1.2 2.3 2753 chr3L 6001671 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004424 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-42 884 chr3L 6040372 6040393 chr3L 6042747 6042769 Doc 7 2376 2.0 8.0 5.0 1.2 2397 chr3L 6040372 intergenic Jon65Aiv + chr3L 6041570 intergenic not near genes chr3L 6042769 intergenic not near genes chr3L_7_6040001 chr3L_6040001 RAL-42 885 chr3L 6116682 6116712 chr3L 6116785 6116815 7 104 3.0 0.0 1.5 2.8 133 chr3L 6116682 intron Ets65A + chr3L 6116748 intron Ets65A + chr3L 6116815 intron Ets65A + chr3L_7_6115001 chr3L_6115001 RAL-42 886 chr3L 6119128 6119152 chr3L 6119225 6119249 9 97 3.0 0.0 1.5 3.6 121 chr3L 6119128 exon Ets65A + chr3L 6119188 intron Ets65A + chr3L 6119249 intron Ets65A + chr3L_9_6115001 chr3L_6115001 RAL-42 887 chr3L 6151628 6151676 chr3L 6151733 6151781 22 105 4.0 6.0 5.0 3.7 153 chr3L 6151628 exon Lcp65Aa + chr3L 6151704 3` UTR Lcp65Aa + chr3L 6151781 3` UTR Lcp65Aa + chr3L_22_6150001 chr3L_6150001 RAL-42 888 chr3L 6155681 6155713 chr3L 6155787 6155819 8 106 8.5 5.0 6.8 1.0 138 chr3L 6155681 intergenic CR45421 - chr3L 6155750 intergenic not near genes chr3L 6155819 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-42 889 chr3L 6169119 6169135 chr3L 6169215 6169236 6 100 4.0 7.0 5.5 0.9 117 chr3L 6169119 3` UTR CG10289 - chr3L 6169178 3` UTR CG10289 - chr3L 6169236 3` UTR CG10289 - chr3L_6_6165001 chr3L_6165001 RAL-42 890 chr3L 6220913 6220941 chr3L 6230074 6230113 roo 4 9169 2.5 2.5 2.5 1.1 9200 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225513 intergenic not near genes chr3L 6230113 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-42 891 chr3L 6268108 6268129 chr3L 6268304 6268325 6 196 2.0 4.5 3.2 1.4 217 chr3L 6268108 intergenic not near genes chr3L 6268216 intergenic not near genes chr3L 6268325 intergenic not near genes chr3L_6_6265001 chr3L_6265001 RAL-42 892 chr3L 6278197 6278242 chr3L 6278293 6278337 6 96 4.0 0.0 2.0 2.0 140 chr3L 6278197 intergenic not near genes chr3L 6278267 intergenic not near genes chr3L 6278337 intergenic not near genes chr3L_6_6275001 chr3L_6275001 RAL-42 893 chr3L 6312062 6312068 chr3L 6312177 6312183 4 114 6.0 7.5 6.8 0.5 121 chr3L 6312062 intergenic not near genes chr3L 6312122 intergenic not near genes chr3L 6312183 intergenic not near genes chr3L_4_6310001 chr3L_6310001 RAL-42 894 chr3L 6334996 6335034 chr3L 6335487 6335522 297 7 489 5.5 2.5 4.0 1.4 526 chr3L 6334996 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335522 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-42 895 chr3L 6358603 6358652 chr3L 6358700 6358747 15 97 2.0 3.5 2.8 3.9 144 chr3L 6358603 intergenic not near genes chr3L 6358675 intergenic not near genes chr3L 6358747 intergenic not near genes chr3L_15_6355001 chr3L_6355001 RAL-42 896 chr3L 6405645 6405685 chr3L 6432129 6432169 roo 14 26484 6.5 6.0 6.2 1.9 26524 chr3L 6405645 intron CG42747 + chr3L 6418907 intron CG42747 + chr3L 6432169 intron CG42747 + chr3L_14_6415001 chr3L_6415001 RAL-42 897 chr3L 6641688 6641708 chr3L 6642046 6642066 8 358 2.0 0.0 1.0 4.0 378 chr3L 6641688 intergenic CR45238 + chr3L 6641877 intergenic CR45238 +,CR45239 + chr3L 6642066 intergenic CR45239 + chr3L_8_6640001 chr3L_6640001 RAL-42 898 chr3L 6727770 6727815 chr3L 6727887 6727910 6 111 5.5 3.0 4.2 1.2 140 chr3L 6727770 intergenic CR45417 + chr3L 6727840 intergenic CR45417 + chr3L 6727910 intergenic CR45417 + chr3L_6_6725001 chr3L_6725001 RAL-42 899 chr3L 6829241 6829269 chr3L 6829354 6829381 4 112 2.5 0.0 1.2 1.8 140 chr3L 6829241 intergenic not near genes chr3L 6829311 intergenic not near genes chr3L 6829381 intergenic not near genes chr3L_4_6825001 chr3L_6825001 RAL-42 900 chr3L 6855918 6855950 chr3L 6860723 6860755 Doc 5 4797 2.0 2.0 2.0 1.7 4837 chr3L 6855918 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860755 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-42 901 chr3L 6887497 6887545 chr3L 6895008 6895037 roo 19 7511 5.5 5.0 5.2 3.1 7540 chr3L 6887497 intergenic not near genes chr3L 6891267 intergenic not near genes chr3L 6895037 intergenic not near genes chr3L_19_6890001 chr3L_6890001 RAL-42 902 chr3L 6942044 6942070 chr3L 6942163 6942189 9 119 2.0 7.0 4.5 1.6 145 chr3L 6942044 intergenic not near genes chr3L 6942116 intergenic not near genes chr3L 6942189 intergenic not near genes chr3L_9_6940001 chr3L_6940001 RAL-42 903 chr3L 6989276 6989321 chr3L 6989374 6989419 14 98 6.5 4.0 5.2 2.3 143 chr3L 6989276 intergenic not near genes chr3L 6989348 intergenic not near genes chr3L 6989419 intergenic not near genes chr3L_14_6985001 chr3L_6985001 RAL-42 904 chr3L 7033163 7033204 chr3L 7033254 7033306 4 94 1.5 3.0 2.2 1.2 143 chr3L 7033163 intron Mp + chr3L 7033234 intron Mp + chr3L 7033306 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-42 905 chr3L 7100416 7100460 chr3L 7100523 7100562 6 106 3.0 1.5 2.2 1.9 146 chr3L 7100416 intron form3 + chr3L 7100489 intron form3 + chr3L 7100562 intron form3 + chr3L_6_7100001 chr3L_7100001 RAL-42 906 chr3L 7187394 7187409 chr3L 7187496 7187511 7 102 0.0 0.0 0.0 7.0 117 chr3L 7187394 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187511 intron Dscam2 - chr3L_7_7185001 chr3L_7185001 RAL-42 907 chr3L 7236612 7236624 chr3L 7236808 7236820 6 196 4.5 2.5 3.5 1.3 208 chr3L 7236612 intergenic CG14829 - chr3L 7236716 intergenic CG14829 - chr3L 7236820 3` UTR CG14829 - chr3L_6_7235001 chr3L_7235001 RAL-42 908 chr3L 7377298 7377329 chr3L 7380423 7380454 297 12 3125 9.0 6.5 7.8 1.4 3156 chr3L 7377298 intron SMSr - chr3L 7378876 intron SMSr - chr3L 7380454 intron SMSr - chr3L_12_7375001 chr3L_7375001 RAL-42 909 chr3L 7426009 7426041 chr3L 7426408 7426443 5 400 2.5 1.5 2.0 1.7 434 chr3L 7426009 intron CG42458 + chr3L 7426226 intron CG42458 + chr3L 7426443 intron CG42458 + chr3L_5_7425001 chr3L_7425001 RAL-42 910 chr3L 7460363 7460400 chr3L 7460467 7460504 7 104 0.0 5.5 2.8 1.8 141 chr3L 7460363 intergenic not near genes chr3L 7460434 intergenic not near genes chr3L 7460504 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-42 911 chr3L 7462967 7462989 chr3L 7463066 7463088 5 99 1.0 2.5 1.8 1.8 121 chr3L 7462967 intergenic not near genes chr3L 7463028 intergenic not near genes chr3L 7463088 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-42 912 chr3L 7480032 7480063 chr3L 7480141 7480172 9 109 4.0 2.0 3.0 2.2 140 chr3L 7480032 intergenic not near genes chr3L 7480102 intergenic not near genes chr3L 7480172 intergenic not near genes chr3L_9_7480001 chr3L_7480001 RAL-42 913 chr3L 7498746 7498771 chr3L 7503544 7503569 F-element 7 4798 11.0 5.5 8.2 0.8 4823 chr3L 7498746 5` UTR CG8539 - chr3L 7501158 intergenic not near genes chr3L 7503569 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-42 914 chr3L 7505395 7505428 chr3L 7505491 7505524 10 96 1.5 5.0 3.2 2.4 129 chr3L 7505395 intergenic CG7548 - chr3L 7505460 intergenic CG7548 - chr3L 7505524 intergenic CG7548 - chr3L_10_7505001 chr3L_7505001 RAL-42 915 chr3L 7524144 7524168 chr3L 7524261 7524285 8 116 5.0 6.0 5.5 1.2 141 chr3L 7524144 intron ltl + chr3L 7524214 intron ltl + chr3L 7524285 intron ltl + chr3L_8_7520001 chr3L_7520001 RAL-42 916 chr3L 7574843 7574849 chr3L 7574940 7574946 4 97 0.0 0.5 0.2 3.3 103 chr3L 7574843 intergenic not near genes chr3L 7574894 intergenic not near genes chr3L 7574946 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-42 917 chr3L 7576195 7576243 chr3L 7576303 7576351 14 106 3.0 3.5 3.2 3.3 156 chr3L 7576195 intergenic not near genes chr3L 7576273 intergenic not near genes chr3L 7576351 intergenic not near genes chr3L_14_7575001 chr3L_7575001 RAL-42 918 chr3L 7591162 7591177 chr3L 7591235 7591239 4 80 3.5 1.5 2.5 1.1 77 chr3L 7591162 intergenic CG7716 - chr3L 7591200 intergenic CG7716 - chr3L 7591239 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-42 919 chr3L 7630520 7630566 chr3L 7630616 7630663 5 95 0.5 1.5 1.0 2.5 143 chr3L 7630520 intron CG33275 + chr3L 7630592 intron CG33275 + chr3L 7630663 intron CG33275 + chr3L_5_7630001 chr3L_7630001 RAL-42 920 chr3L 7760075 7760095 chr3L 7760171 7760191 5 96 5.0 3.5 4.2 1.0 116 chr3L 7760075 intergenic Hn + chr3L 7760133 intergenic Hn + chr3L 7760191 intergenic Hn + chr3L_5_7760001 chr3L_7760001 RAL-42 921 chr3L 7833494 7833501 chr3L 7833620 7833627 4 126 0.0 0.0 0.0 4.0 133 chr3L 7833494 intron Pdp1 - chr3L 7833560 intron Pdp1 - chr3L 7833627 intron Pdp1 - chr3L_4_7830001 chr3L_7830001 RAL-42 922 chr3L 7867801 7867947 chr3L 7867899 7868058 6 106 3.0 3.5 3.2 1.4 257 chr3L 7867801 intergenic Pdp1 - chr3L 7867930 intergenic not near genes chr3L 7868058 intergenic not near genes chr3L_6_7865001 chr3L_7865001 RAL-42 923 chr3L 7916813 7916858 chr3L 7926004 7926049 roo 10 9191 5.0 6.5 5.8 1.5 9236 chr3L 7916813 3` UTR syd - chr3L 7921431 intron syd - chr3L 7926049 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-42 924 chr3L 7985359 7985392 chr3L 7987707 7987741 NOF 8 2348 2.0 5.5 3.8 1.7 2382 chr3L 7985359 intron nmo + chr3L 7986550 intron nmo + chr3L 7987741 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-42 925 chr3L 8019681 8019731 chr3L 8024113 8024161 NOF 10 4427 3.5 2.5 3.0 2.5 4480 chr3L 8019681 intron nmo + chr3L 8021921 intron nmo + chr3L 8024161 intron nmo + chr3L_10_8020001 chr3L_8020001 RAL-42 926 chr3L 8081259 8081311 chr3L 8081382 8081434 14 123 1.0 2.0 1.5 5.6 175 chr3L 8081259 intron Ect4 + chr3L 8081346 intron Ect4 + chr3L 8081434 intron Ect4 + chr3L_14_8080001 chr3L_8080001 RAL-42 927 chr3L 8210788 8210801 chr3L 8210923 8210936 4 134 6.5 7.0 6.8 0.5 148 chr3L 8210788 intergenic CG32364 - chr3L 8210862 intergenic CG32364 - chr3L 8210936 intergenic CG32364 - chr3L_4_8210001 chr3L_8210001 RAL-42 928 chr3L 8226700 8226728 chr3L 8226819 8226847 5 119 8.0 0.0 4.0 1.0 147 chr3L 8226700 intergenic not near genes chr3L 8226774 intergenic not near genes chr3L 8226847 intergenic not near genes chr3L_5_8225001 chr3L_8225001 RAL-42 929 chr3L 8248312 8248337 chr3L 8248408 8248447 4 106 3.0 1.5 2.2 1.2 135 chr3L 8248312 intron Dscam4 + chr3L 8248380 intron Dscam4 + chr3L 8248447 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-42 930 chr3L 8359816 8359851 chr3L 8359985 8360026 5 174 2.0 1.5 1.8 1.8 210 chr3L 8359816 intron Idh - chr3L 8359921 intron Idh - chr3L 8360026 intron Idh - chr3L_5_8355001 chr3L_8355001 RAL-42 931 chr3L 8364509 8364535 chr3L 8364620 8364646 7 111 2.5 0.0 1.2 3.2 137 chr3L 8364509 intergenic not near genes chr3L 8364578 intergenic not near genes chr3L 8364646 intergenic not near genes chr3L_7_8360001 chr3L_8360001 RAL-42 932 chr3L 8445715 8445728 chr3L 8445811 8445824 4 96 6.0 8.0 7.0 0.5 109 chr3L 8445715 intron CG6983 - chr3L 8445770 intron CG6983 - chr3L 8445824 intron CG6983 - chr3L_4_8445001 chr3L_8445001 RAL-42 933 chr3L 8481796 8481802 chr3L 8490939 8490980 roo 5 9159 2.0 4.0 3.0 1.2 9184 chr3L 8481796 intron CG43163 - chr3L 8486388 intron CG43163 - chr3L 8490980 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-42 934 chr3L 8546034 8546063 chr3L 8546139 8546168 5 105 5.0 9.5 7.2 0.6 134 chr3L 8546034 intron rhea + chr3L 8546101 intron rhea + chr3L 8546168 intron rhea + chr3L_5_8545001 chr3L_8545001 RAL-42 935 chr3L 8582927 8582973 chr3L 8583027 8583073 19 100 5.5 0.5 3.0 4.8 146 chr3L 8582927 intron CG43078 + chr3L 8583000 intron CG43078 + chr3L 8583073 intron CG43078 + chr3L_19_8580001 chr3L_8580001 RAL-42 936 chr3L 8717246 8717282 chr3L 8717468 8717473 10 215 2.0 11.0 6.5 1.3 227 chr3L 8717246 intergenic not near genes chr3L 8717360 intergenic not near genes chr3L 8717473 intergenic not near genes chr3L_10_8715001 chr3L_8715001 RAL-42 937 chr3L 8826760 8826799 chr3L 8826898 8826937 13 136 8.0 6.0 7.0 1.6 177 chr3L 8826760 intergenic not near genes chr3L 8826848 intergenic not near genes chr3L 8826937 intergenic not near genes chr3L_13_8825001 chr3L_8825001 RAL-42 938 chr3L 8839741 8839764 chr3L 8839861 8839884 11 120 2.0 2.5 2.2 3.4 143 chr3L 8839741 intron dally + chr3L 8839812 intron dally + chr3L 8839884 intron dally + chr3L_11_8835001 chr3L_8835001 RAL-42 939 chr3L 8846180 8846205 chr3L 8846281 8846306 9 101 2.0 0.0 1.0 4.5 126 chr3L 8846180 intron dally + chr3L 8846243 intron dally + chr3L 8846306 intron dally + chr3L_9_8845001 chr3L_8845001 RAL-42 940 chr3L 8849208 8849240 chr3L 8849303 8849328 7 95 2.0 5.0 3.5 1.6 120 chr3L 8849208 intron dally + chr3L 8849268 intron dally + chr3L 8849328 intron dally + chr3L_7_8845001 chr3L_8845001 RAL-42 941 chr3L 8860444 8860479 chr3L 8861098 8861133 8 653 3.0 5.0 4.0 1.6 689 chr3L 8860444 intron dally + chr3L 8860788 intron dally + chr3L 8861133 intron dally + chr3L_8_8860001 chr3L_8860001 RAL-42 942 chr3L 8959380 8959391 chr3L 8959561 8959572 6 181 6.5 0.5 3.5 1.3 192 chr3L 8959380 intron CG13313 + chr3L 8959476 intron CG13313 + chr3L 8959572 intron CG13313 + chr3L_6_8955001 chr3L_8955001 RAL-42 943 chr3L 8971670 8971719 chr3L 8971770 8971819 6 100 5.0 5.0 5.0 1.0 149 chr3L 8971670 3` UTR CG5026 + chr3L 8971744 3` UTR CG5026 + chr3L 8971819 intergenic CG5026 +,pix - chr3L_6_8970001 chr3L_8970001 RAL-42 944 chr3L 9008630 9008654 chr3L 9008732 9008757 4 102 6.5 2.5 4.5 0.7 127 chr3L 9008630 3` UTR CG5194 - chr3L 9008694 3` UTR CG5194 - chr3L 9008757 exon CG5194 - chr3L_4_9005001 chr3L_9005001 RAL-42 945 chr3L 9111128 9111180 chr3L 9111224 9111276 9 96 1.5 1.0 1.2 4.1 148 chr3L 9111128 intron bol - chr3L 9111202 intron bol - chr3L 9111276 intron bol - chr3L_9_9110001 chr3L_9110001 RAL-42 946 chr3L 9270595 9270642 chr3L 9278370 9278416 roo 7 7775 5.0 0.5 2.8 1.8 7821 chr3L 9270595 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278416 exon GluRIB + chr3L_7_9270001 chr3L_9270001 RAL-42 947 chr3L 9348445 9348480 chr3L 9348967 9348992 5 513 2.0 0.0 1.0 2.5 547 chr3L 9348445 intergenic PGRP-LC + chr3L 9348718 intergenic PGRP-LC + chr3L 9348992 intergenic not near genes chr3L_5_9345001 chr3L_9345001 RAL-42 948 chr3L 9390828 9390869 chr3L 9390978 9391019 20 149 5.5 7.5 6.5 2.7 191 chr3L 9390828 intron CG4080 - chr3L 9390924 intron CG4080 - chr3L 9391019 intron CG4080 - chr3L_20_9390001 chr3L_9390001 RAL-42 949 chr3L 9415132 9415179 chr3L 9415239 9415286 13 107 7.5 5.0 6.2 1.8 154 chr3L 9415132 intron CG3967 - chr3L 9415209 intron CG3967 - chr3L 9415286 intron CG3967 - chr3L_13_9415001 chr3L_9415001 RAL-42 950 chr3L 9437916 9437965 chr3L 9438047 9438096 12 131 4.0 4.5 4.2 2.3 180 chr3L 9437916 intron MTF-1 + chr3L 9438006 intron MTF-1 + chr3L 9438096 intron MTF-1 + chr3L_12_9435001 chr3L_9435001 RAL-42 951 chr3L 9443491 9443535 chr3L 9445302 9445346 S-element 20 1811 6.5 6.0 6.2 2.8 1855 chr3L 9443491 intron CG33926 + chr3L 9444418 intron CG33926 + chr3L 9445346 intron CG33926 + chr3L_20_9440001 chr3L_9440001 RAL-42 952 chr3L 9498183 9498225 chr3L 9498280 9498322 8 97 3.5 3.5 3.5 1.8 139 chr3L 9498183 intron path - chr3L 9498252 intron path - chr3L 9498322 intron path - chr3L_8_9495001 chr3L_9495001 RAL-42 953 chr3L 9501693 9501724 chr3L 9502188 9502215 roo 5 501 2.5 1.5 2.0 1.7 522 chr3L 9501693 intron path - chr3L 9501954 intron path - chr3L 9502215 intron path - chr3L_5_9500001 chr3L_9500001 RAL-42 954 chr3L 9513434 9513460 chr3L 9513541 9513566 9 107 1.0 2.5 1.8 3.2 132 chr3L 9513434 intergenic CG33702 - chr3L 9513500 intergenic CG33702 - chr3L 9513566 intergenic CG33702 - chr3L_9_9510001 chr3L_9510001 RAL-42 955 chr3L 9526463 9526507 chr3L 9528163 9528207 Doc 11 1700 4.5 3.5 4.0 2.2 1744 chr3L 9526463 intergenic not near genes chr3L 9527335 intergenic not near genes chr3L 9528207 intergenic not near genes chr3L_11_9525001 chr3L_9525001 RAL-42 956 chr3L 9571900 9571932 chr3L 9572268 9572300 jockey 4 368 2.0 3.0 2.5 1.1 400 chr3L 9571900 intron CG42673 + chr3L 9572100 intron CG42673 + chr3L 9572300 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-42 957 chr3L 9575903 9575940 chr3L 9581000 9581015 jockey 4 5093 1.0 7.0 4.0 0.8 5112 chr3L 9575903 intron CG42673 + chr3L 9578459 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-42 958 chr3L 9646447 9646500 chr3L 9646592 9646645 4 142 1.5 0.0 0.8 2.2 198 chr3L 9646447 intron,intron fry -,CG33696 + chr3L 9646546 intron,intron fry -,CG33696 + chr3L 9646645 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-42 959 chr3L 9929665 9929693 chr3L 9938466 9938493 roo 6 8800 1.0 3.5 2.2 1.9 8828 chr3L 9929665 intron CG34356 + chr3L 9934079 intron CG34356 + chr3L 9938493 intron CG34356 + chr3L_6_9930001 chr3L_9930001 RAL-42 960 chr3L 9951183 9951220 chr3L 9951289 9951293 8 98 4.0 3.5 3.8 1.7 110 chr3L 9951183 intron CG34356 + chr3L 9951238 intron CG34356 + chr3L 9951293 intron CG34356 + chr3L_8_9950001 chr3L_9950001 RAL-42 961 chr3L 10189844 10189890 chr3L 10190179 10190225 19 335 5.0 3.0 4.0 3.8 381 chr3L 10189844 intergenic ect - chr3L 10190034 intergenic ect - chr3L 10190225 intergenic ect - chr3L_19_10190001 chr3L_10190001 RAL-42 962 chr3L 10300033 10300056 chr3L 10300145 10300168 5 112 5.0 7.0 6.0 0.7 135 chr3L 10300033 intergenic not near genes chr3L 10300100 intergenic not near genes chr3L 10300168 intergenic not near genes chr3L_5_10300001 chr3L_10300001 RAL-42 963 chr3L 10328101 10328127 chr3L 10328233 10328259 5 132 4.0 4.5 4.2 1.0 158 chr3L 10328101 intergenic not near genes chr3L 10328180 intergenic not near genes chr3L 10328259 intergenic not near genes chr3L_5_10325001 chr3L_10325001 RAL-42 964 chr3L 10414932 10414974 chr3L 10417324 10417344 Doc 9 2386 4.5 4.0 4.2 1.7 2412 chr3L 10414932 intergenic CG12362 + chr3L 10416138 intergenic not near genes chr3L 10417344 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-42 965 chr3L 10420466 10420507 chr3L 10420618 10420658 6 152 5.0 0.0 2.5 1.7 192 chr3L 10420466 intergenic not near genes chr3L 10420562 intergenic not near genes chr3L 10420658 intergenic not near genes chr3L_6_10420001 chr3L_10420001 RAL-42 966 chr3L 10450676 10450713 chr3L 10450776 10450813 10 100 0.0 7.5 3.8 2.1 137 chr3L 10450676 intergenic not near genes chr3L 10450744 intergenic not near genes chr3L 10450813 intergenic not near genes chr3L_10_10450001 chr3L_10450001 RAL-42 967 chr3L 10497958 10497991 chr3L 10498135 10498147 6 172 1.5 1.0 1.2 2.7 189 chr3L 10497958 intron A2bp1 + chr3L 10498052 intron A2bp1 + chr3L 10498147 intron A2bp1 + chr3L_6_10495001 chr3L_10495001 RAL-42 968 chr3L 10500452 10500485 chr3L 10500585 10500618 4 133 2.5 2.5 2.5 1.1 166 chr3L 10500452 intron A2bp1 + chr3L 10500535 intron A2bp1 + chr3L 10500618 intron A2bp1 + chr3L_4_10500001 chr3L_10500001 RAL-42 969 chr3L 10509465 10509494 chr3L 10509613 10509643 5 145 3.5 0.0 1.8 1.8 178 chr3L 10509465 intron A2bp1 + chr3L 10509554 intron A2bp1 + chr3L 10509643 intron A2bp1 + chr3L_5_10505001 chr3L_10505001 RAL-42 970 chr3L 10600437 10600475 chr3L 10600539 10600577 6 102 3.5 1.5 2.5 1.7 140 chr3L 10600437 intergenic not near genes chr3L 10600507 intergenic not near genes chr3L 10600577 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-42 971 chr3L 10621840 10621861 chr3L 10621947 10621963 6 105 9.5 4.0 6.8 0.8 123 chr3L 10621840 intergenic not near genes chr3L 10621902 intergenic not near genes chr3L 10621963 intergenic not near genes chr3L_6_10620001 chr3L_10620001 RAL-42 972 chr3L 10735815 10735831 chr3L 10735924 10735940 6 109 3.5 6.0 4.8 1.0 125 chr3L 10735815 intergenic not near genes chr3L 10735878 intergenic not near genes chr3L 10735940 intergenic not near genes chr3L_6_10735001 chr3L_10735001 RAL-42 973 chr3L 10746329 10746379 chr3L 10746433 10746451 4 92 3.0 1.0 2.0 1.3 122 chr3L 10746329 intergenic not near genes chr3L 10746390 intergenic not near genes chr3L 10746451 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-42 974 chr3L 10865035 10865076 chr3L 10865135 10865176 6 97 1.0 1.5 1.2 2.7 141 chr3L 10865035 intron tna + chr3L 10865106 intron tna + chr3L 10865176 intron tna + chr3L_6_10865001 chr3L_10865001 RAL-42 975 chr3L 10889204 10889255 chr3L 10889304 10889329 7 96 3.5 1.5 2.5 2.0 125 chr3L 10889204 intergenic not near genes chr3L 10889266 intergenic not near genes chr3L 10889329 intergenic not near genes chr3L_7_10885001 chr3L_10885001 RAL-42 976 chr3L 11105278 11105327 chr3L 11107009 11107058 X-element 6 1731 3.0 1.5 2.2 1.9 1780 chr3L 11105278 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107058 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-42 977 chr3L 11135509 11135805 chr3L 11135759 11135908 10 177 0.0 0.0 0.0 10.0 399 chr3L 11135509 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135908 intergenic CG32082 +,CG14143 + chr3L_10_11135001 chr3L_11135001 RAL-42 978 chr3L 11303028 11303042 chr3L 11303134 11303147 5 106 3.0 0.0 1.5 2.0 119 chr3L 11303028 intergenic not near genes chr3L 11303088 intergenic not near genes chr3L 11303147 intergenic not near genes chr3L_5_11300001 chr3L_11300001 RAL-42 979 chr3L 11376090 11376122 chr3L 11376245 11376277 4 155 3.5 2.0 2.8 1.1 187 chr3L 11376090 intergenic not near genes chr3L 11376184 intergenic not near genes chr3L 11376277 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-42 980 chr3L 11456886 11456902 chr3L 11457005 11457021 6 119 2.5 7.5 5.0 1.0 135 chr3L 11456886 intergenic CG12289 - chr3L 11456954 intergenic CG12289 - chr3L 11457021 intergenic CG12289 - chr3L_6_11455001 chr3L_11455001 RAL-42 981 chr3L 11493144 11493188 chr3L 11493246 11493290 14 102 0.0 5.0 2.5 4.0 146 chr3L 11493144 intron chrb + chr3L 11493217 intron chrb + chr3L 11493290 intron chrb + chr3L_14_11490001 chr3L_11490001 RAL-42 982 chr3L 11587901 11587952 chr3L 11587997 11588048 13 95 1.5 3.0 2.2 4.1 147 chr3L 11587901 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588048 intergenic rt - chr3L_13_11585001 chr3L_11585001 RAL-42 983 chr3L 11590248 11590272 chr3L 11590358 11590382 11 109 4.0 4.0 4.0 2.2 134 chr3L 11590248 intergenic CG7377 + chr3L 11590315 intergenic CG7377 + chr3L 11590382 intergenic CG7377 +,CG33268 - chr3L_11_11590001 chr3L_11590001 RAL-42 984 chr3L 11590738 11590778 chr3L 11590840 11590880 15 102 4.0 7.5 5.8 2.2 142 chr3L 11590738 intergenic CG33268 - chr3L 11590809 intergenic CG33268 - chr3L 11590880 3` UTR CG33268 - chr3L_15_11590001 chr3L_11590001 RAL-42 985 chr3L 11678079 11678122 chr3L 11678186 11678229 18 107 5.0 7.0 6.0 2.6 150 chr3L 11678079 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678229 intron CG32085 - chr3L_18_11675001 chr3L_11675001 RAL-42 986 chr3L 11723080 11723112 chr3L 11727895 11727927 Doc 14 4815 5.5 10.0 7.8 1.6 4847 chr3L 11723080 3` UTR Bmcp + chr3L 11725504 intron Bmcp + chr3L 11727927 3` UTR Bmcp + chr3L_14_11725001 chr3L_11725001 RAL-42 987 chr3L 11729661 11729701 chr3L 11729757 11729761 8 91 5.5 5.5 5.5 1.2 100 chr3L 11729661 exon CG32088 + chr3L 11729711 intron CG32088 + chr3L 11729761 intron CG32088 + chr3L_8_11725001 chr3L_11725001 RAL-42 988 chr3L 11744000 11744019 chr3L 11744128 11744147 5 128 6.0 4.0 5.0 0.8 147 chr3L 11744000 exon CG6024 - chr3L 11744074 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-42 989 chr3L 11864548 11864582 chr3L 11865853 11865897 pogo 6 1313 0.5 3.5 2.0 2.0 1349 chr3L 11864548 intron CG44837 - chr3L 11865222 intron CG44837 - chr3L 11865897 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-42 990 chr3L 11870222 11870246 chr3L 11870374 11870398 7 152 2.5 0.0 1.2 3.2 176 chr3L 11870222 intron CG44837 - chr3L 11870310 intron CG44837 - chr3L 11870398 intron CG44837 - chr3L_7_11870001 chr3L_11870001 RAL-42 991 chr3L 11943474 11943521 chr3L 11943595 11943638 20 121 4.0 9.5 6.8 2.6 164 chr3L 11943474 3` UTR Rpt4R + chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943638 intergenic CG5883 -,Rpt4R + chr3L_20_11940001 chr3L_11940001 RAL-42 992 chr3L 12013901 12013934 chr3L 12014012 12014045 11 110 6.0 1.5 3.8 2.3 144 chr3L 12013901 intron rols - chr3L 12013973 intron rols - chr3L 12014045 intron rols - chr3L_11_12010001 chr3L_12010001 RAL-42 993 chr3L 12072361 12072400 chr3L 12072745 12072785 8 380 5.0 4.0 4.5 1.5 424 chr3L 12072361 intron Sema-5c - chr3L 12072573 intron Sema-5c - chr3L 12072785 intron Sema-5c - chr3L_8_12070001 chr3L_12070001 RAL-42 994 chr3L 12075404 12075460 chr3L 12075513 12075564 8 107 3.0 0.0 1.5 3.2 160 chr3L 12075404 intron Sema-5c - chr3L 12075484 intron Sema-5c - chr3L 12075564 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-42 995 chr3L 12092383 12092400 chr3L 12092480 12092497 4 97 2.0 1.0 1.5 1.6 114 chr3L 12092383 intergenic not near genes chr3L 12092440 intergenic not near genes chr3L 12092497 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-42 996 chr3L 12157156 12157174 chr3L 12158364 12158382 4 1208 76.0 57.0 66.5 0.1 1226 chr3L 12157156 3` UTR CG9760 - chr3L 12157769 3` UTR CG9760 - chr3L 12158382 intron CG9760 - chr3L_4_12155001 chr3L_12155001 RAL-42 997 chr3L 12158489 12158521 chr3L 12158730 12158762 14 241 35.5 29.5 32.5 0.4 273 chr3L 12158489 intron CG9760 - chr3L 12158626 intron CG9760 - chr3L 12158762 intron CG9760 - chr3L_14_12155001 chr3L_12155001 RAL-42 998 chr3L 12158779 12158806 chr3L 12160241 12160279 8 1465 59.5 61.0 60.2 0.1 1500 chr3L 12158779 intron CG9760 - chr3L 12159529 exon CG9760 - chr3L 12160279 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-42 999 chr3L 12156430 12156487 chr3L 12160295 12160349 15 3869 44.0 41.5 42.8 0.3 3919 chr3L 12156430 3` UTR Nrx-IV + chr3L 12158390 intron CG9760 - chr3L 12160349 intron CG9760 - chr3L_15_12155001 chr3L_12155001 RAL-42 1000 chr3L 12170785 12170824 chr3L 12170887 12170926 8 102 1.0 5.5 3.2 1.9 141 chr3L 12170785 intron Rh7 - chr3L 12170856 intron Rh7 - chr3L 12170926 intron Rh7 - chr3L_8_12170001 chr3L_12170001 RAL-42 1001 chr3L 12290229 12290259 chr3L 12290338 12290369 6 110 0.5 5.0 2.8 1.6 140 chr3L 12290229 intergenic CR45658 - chr3L 12290299 intergenic CR45658 - chr3L 12290369 intergenic CR45658 - chr3L_6_12290001 chr3L_12290001 RAL-42 1002 chr3L 12312487 12312508 chr3L 12312584 12312606 4 98 0.0 3.0 1.5 1.6 119 chr3L 12312487 intergenic not near genes chr3L 12312546 intergenic not near genes chr3L 12312606 intergenic not near genes chr3L_4_12310001 chr3L_12310001 RAL-42 1003 chr3L 12369517 12369567 chr3L 12369627 12369677 20 110 5.5 3.0 4.2 3.8 160 chr3L 12369517 intron Ncc69 - chr3L 12369597 intron Ncc69 - chr3L 12369677 intron Ncc69 - chr3L_20_12365001 chr3L_12365001 RAL-42 1004 chr3L 12412902 12412921 chr3L 12413004 12413023 12 101 4.5 3.0 3.8 2.5 121 chr3L 12412902 intron CG32103 - chr3L 12412962 intron CG32103 - chr3L 12413023 intron CG32103 - chr3L_12_12410001 chr3L_12410001 RAL-42 1005 chr3L 12446251 12446300 chr3L 12446349 12446352 7 77 4.5 4.0 4.2 1.3 101 chr3L 12446251 intergenic not near genes chr3L 12446302 intergenic not near genes chr3L 12446352 intergenic not near genes chr3L_7_12445001 chr3L_12445001 RAL-42 1006 chr3L 12578033 12578066 chr3L 12578140 12578174 6 108 4.5 0.0 2.2 1.9 141 chr3L 12578033 intergenic not near genes chr3L 12578104 intergenic not near genes chr3L 12578174 intergenic not near genes chr3L_6_12575001 chr3L_12575001 RAL-42 1007 chr3L 12581505 12581545 chr3L 12581601 12581642 7 95 3.0 2.0 2.5 2.0 137 chr3L 12581505 intron ara + chr3L 12581574 intron ara + chr3L 12581642 intron ara + chr3L_7_12580001 chr3L_12580001 RAL-42 1008 chr3L 12614582 12614597 chr3L 12614740 12614755 5 158 0.0 5.0 2.5 1.4 173 chr3L 12614582 intron caup + chr3L 12614668 intron caup + chr3L 12614755 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-42 1009 chr3L 12626133 12626163 chr3L 12626261 12626292 11 129 5.5 0.0 2.8 2.9 159 chr3L 12626133 intergenic not near genes chr3L 12626212 intergenic not near genes chr3L 12626292 intergenic not near genes chr3L_11_12625001 chr3L_12625001 RAL-42 1010 chr3L 12647930 12647959 chr3L 12648026 12648055 8 96 5.0 4.0 4.5 1.5 125 chr3L 12647930 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648055 5` UTR CR32111 + chr3L_8_12645001 chr3L_12645001 RAL-42 1011 chr3L 12689627 12689674 chr3L 12689728 12689775 14 100 1.0 6.5 3.8 2.9 148 chr3L 12689627 intergenic not near genes chr3L 12689701 intergenic not near genes chr3L 12689775 intergenic not near genes chr3L_14_12685001 chr3L_12685001 RAL-42 1012 chr3L 12788397 12788429 chr3L 12788537 12788561 6 139 6.0 3.0 4.5 1.1 164 chr3L 12788397 intron Atg1 - chr3L 12788479 intron Atg1 - chr3L 12788561 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-42 1013 chr3L 12801990 12802010 chr3L 12802086 12802106 6 95 0.0 1.0 0.5 4.0 116 chr3L 12801990 intron Atg1 - chr3L 12802048 intron Atg1 - chr3L 12802106 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-42 1014 chr3L 12874910 12874950 chr3L 12877222 12877262 jockey 7 2312 2.0 4.5 3.2 1.7 2352 chr3L 12874910 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877262 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-42 1015 chr3L 12894794 12894798 chr3L 12894892 12894895 5 97 15.5 5.5 10.5 0.4 101 chr3L 12894794 intergenic CG14118 + chr3L 12894844 intergenic CG14118 + chr3L 12894895 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-42 1016 chr3L 12894799 12894803 chr3L 12894890 12894901 4 96 13.0 5.5 9.2 0.4 102 chr3L 12894799 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894901 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-42 1017 chr3L 12957777 12957811 chr3L 12962279 12962313 copia 7 4502 2.5 2.5 2.5 2.0 4536 chr3L 12957777 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962313 intergenic not near genes chr3L_7_12960001 chr3L_12960001 RAL-42 1018 chr3L 12978746 12978762 chr3L 12978845 12978861 4 99 7.0 0.0 3.5 0.9 115 chr3L 12978746 intergenic not near genes chr3L 12978804 intergenic not near genes chr3L 12978861 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-42 1019 chr3L 13085062 13085082 chr3L 13085161 13085181 4 99 1.5 8.5 5.0 0.7 119 chr3L 13085062 intergenic not near genes chr3L 13085122 intergenic not near genes chr3L 13085181 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-42 1020 chr3L 13101315 13101358 chr3L 13101424 13101469 18 110 5.5 5.0 5.2 2.9 154 chr3L 13101315 intergenic CR44554 - chr3L 13101392 intergenic CR44554 - chr3L 13101469 intergenic CR44554 - chr3L_18_13100001 chr3L_13100001 RAL-42 1021 chr3L 13139295 13139339 chr3L 13139411 13139450 5 115 3.0 3.5 3.2 1.2 155 chr3L 13139295 intergenic not near genes chr3L 13139372 intergenic not near genes chr3L 13139450 intergenic not near genes chr3L_5_13135001 chr3L_13135001 RAL-42 1022 chr3L 13142129 13142177 chr3L 13142262 13142310 14 133 2.5 8.0 5.2 2.3 181 chr3L 13142129 intergenic not near genes chr3L 13142220 intergenic not near genes chr3L 13142310 intergenic not near genes chr3L_14_13140001 chr3L_13140001 RAL-42 1023 chr3L 13144101 13144135 chr3L 13144198 13144231 7 96 4.5 0.5 2.5 2.0 130 chr3L 13144101 intergenic not near genes chr3L 13144166 intergenic not near genes chr3L 13144231 intergenic not near genes chr3L_7_13140001 chr3L_13140001 RAL-42 1024 chr3L 13267275 13267317 chr3L 13267408 13267450 12 132 2.0 6.5 4.2 2.3 175 chr3L 13267275 intron caps + chr3L 13267362 intron caps + chr3L 13267450 intron caps + chr3L_12_13265001 chr3L_13265001 RAL-42 1025 chr3L 13296512 13296539 chr3L 13296623 13296650 12 111 4.5 6.0 5.2 1.9 138 chr3L 13296512 intergenic Sfp70A4 -,CR45253 + chr3L 13296581 3` UTR Sfp70A4 - chr3L 13296650 3` UTR Sfp70A4 - chr3L_12_13295001 chr3L_13295001 RAL-42 1026 chr3L 13338622 13338660 chr3L 13338719 13338757 6 97 2.5 2.0 2.2 1.9 135 chr3L 13338622 intergenic not near genes chr3L 13338690 intergenic not near genes chr3L 13338757 intergenic not near genes chr3L_6_13335001 chr3L_13335001 RAL-42 1027 chr3L 13400520 13400545 chr3L 13400616 13400641 8 96 2.0 8.5 5.2 1.3 121 chr3L 13400520 intron sens - chr3L 13400580 intron sens - chr3L 13400641 intron sens - chr3L_8_13400001 chr3L_13400001 RAL-42 1028 chr3L 13525135 13525185 chr3L 13532951 13532999 roo 4 7814 1.0 1.5 1.2 1.8 7864 chr3L 13525135 intergenic not near genes chr3L 13529067 intergenic not near genes chr3L 13532999 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-42 1029 chr3L 13745277 13745315 chr3L 13745379 13745417 8 102 0.5 3.5 2.0 2.7 140 chr3L 13745277 intron bru-3 - chr3L 13745347 intron bru-3 - chr3L 13745417 intron bru-3 - chr3L_8_13745001 chr3L_13745001 RAL-42 1030 chr3L 13751350 13751388 chr3L 13751447 13751485 7 97 0.0 1.0 0.5 4.7 135 chr3L 13751350 intron bru-3 - chr3L 13751418 intron bru-3 - chr3L 13751485 intron bru-3 - chr3L_7_13750001 chr3L_13750001 RAL-42 1031 chr3L 13766893 13766919 chr3L 13767011 13767037 10 118 8.5 8.0 8.2 1.1 144 chr3L 13766893 intron bru-3 - chr3L 13766965 intron bru-3 - chr3L 13767037 intron bru-3 - chr3L_10_13765001 chr3L_13765001 RAL-42 1032 chr3L 13804529 13804573 chr3L 13822835 13822871 roo 5 18304 3.5 5.0 4.2 1.0 18342 chr3L 13804529 intergenic not near genes chr3L 13813700 intergenic not near genes chr3L 13822871 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-42 1033 chr3L 13841137 13841162 chr3L 13841248 13841269 5 108 0.0 3.0 1.5 2.0 132 chr3L 13841137 3` UTR CG8757 - chr3L 13841203 3` UTR CG8757 - chr3L 13841269 3` UTR CG8757 - chr3L_5_13840001 chr3L_13840001 RAL-42 1034 chr3L 13884367 13884386 chr3L 13884478 13884497 4 111 4.0 3.0 3.5 0.9 130 chr3L 13884367 intron dysc - chr3L 13884432 intron dysc - chr3L 13884497 intron dysc - chr3L_4_13880001 chr3L_13880001 RAL-42 1035 chr3L 13920401 13920430 chr3L 13920501 13920530 8 100 4.5 4.5 4.5 1.5 129 chr3L 13920401 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920530 intron Rgl - chr3L_8_13920001 chr3L_13920001 RAL-42 1036 chr3L 14063040 14063084 chr3L 14063330 14063374 16 289 3.5 6.0 4.8 2.8 334 chr3L 14063040 intron CG32138 + chr3L 14063207 intron CG32138 + chr3L 14063374 intron CG32138 + chr3L_16_14060001 chr3L_14060001 RAL-42 1037 chr3L 14076282 14076311 chr3L 14076379 14076409 5 98 0.0 4.0 2.0 1.7 127 chr3L 14076282 intron btl + chr3L 14076346 intron btl + chr3L 14076409 intron btl + chr3L_5_14075001 chr3L_14075001 RAL-42 1038 chr3L 14175343 14175363 chr3L 14175511 14175531 8 168 5.0 4.5 4.8 1.4 188 chr3L 14175343 intergenic D - chr3L 14175437 intergenic D - chr3L 14175531 intergenic D - chr3L_8_14175001 chr3L_14175001 RAL-42 1039 chr3L 14234833 14234855 chr3L 14234950 14234972 5 117 6.0 4.5 5.2 0.8 139 chr3L 14234833 intergenic CG34244 -,CG7924 + chr3L 14234902 intergenic CG34244 -,CG7924 + chr3L 14234972 intergenic CG34244 -,CG7924 + chr3L_5_14230001 chr3L_14230001 RAL-42 1040 chr3L 14245557 14245589 chr3L 14245665 14245703 1360 7 113 3.0 2.5 2.8 1.8 146 chr3L 14245557 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245703 intergenic CR44561 -,CR44560 + chr3L_7_14245001 chr3L_14245001 RAL-42 1041 chr3L 14266037 14266083 chr3L 14266141 14266170 9 96 5.0 2.5 3.8 1.9 133 chr3L 14266037 intergenic not near genes chr3L 14266104 intergenic not near genes chr3L 14266170 intergenic not near genes chr3L_9_14265001 chr3L_14265001 RAL-42 1042 chr3L 14267357 14267382 chr3L 14271817 14271842 F-element 4 4460 4.0 6.0 5.0 0.7 4485 chr3L 14267357 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271842 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-42 1043 chr3L 14295963 14296005 chr3L 14296467 14296509 roo 10 502 1.5 3.0 2.2 3.1 546 chr3L 14295963 intron fz + chr3L 14296236 intron fz + chr3L 14296509 intron fz + chr3L_10_14295001 chr3L_14295001 RAL-42 1044 chr3L 14312018 14312052 chr3L 14316837 14316886 X-element 10 4832 2.0 8.0 5.0 1.7 4868 chr3L 14312018 exon fz + chr3L 14314452 intron fz + chr3L 14316886 intron fz + chr3L_10_14310001 chr3L_14310001 RAL-42 1045 chr3L 14338284 14338300 chr3L 14338400 14338402 5 113 0.5 3.5 2.0 1.7 118 chr3L 14338284 intron fz + chr3L 14338343 intron fz + chr3L 14338402 intron fz + chr3L_5_14335001 chr3L_14335001 RAL-42 1046 chr3L 14356523 14356552 chr3L 14356613 14356652 6 89 2.0 2.0 2.0 2.0 129 chr3L 14356523 intron fz + chr3L 14356588 intron fz + chr3L 14356652 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-42 1047 chr3L 14455351 14455390 chr3L 14455452 14455489 6 98 2.5 0.0 1.2 2.7 138 chr3L 14455351 intron bbg - chr3L 14455420 intron bbg - chr3L 14455489 intron bbg - chr3L_6_14455001 chr3L_14455001 RAL-42 1048 chr3L 14468431 14468471 chr3L 14473656 14473697 copia 9 5226 3.0 1.5 2.2 2.8 5266 chr3L 14468431 intron bbg - chr3L 14471064 intron bbg - chr3L 14473697 intron bbg - chr3L_9_14470001 chr3L_14470001 RAL-42 1049 chr3L 14485982 14486020 chr3L 14486250 14486280 7 267 4.5 1.0 2.8 1.8 298 chr3L 14485982 intron bbg - chr3L 14486131 intron bbg - chr3L 14486280 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-42 1050 chr3L 14546591 14546817 chr3L 14546692 14546918 5 101 0.5 3.5 2.0 1.7 327 chr3L 14546591 intron CG9238 - chr3L 14546754 intron CG9238 - chr3L 14546918 intron CG9238 - chr3L_5_14545001 chr3L_14545001 RAL-42 1051 chr3L 14715734 14715752 chr3L 14715841 14715859 6 107 1.5 1.0 1.2 2.7 125 chr3L 14715734 intron ome + chr3L 14715796 intron ome + chr3L 14715859 intron ome + chr3L_6_14715001 chr3L_14715001 RAL-42 1052 chr3L 14725575 14725614 chr3L 14728593 14728632 Doc 4 3018 1.0 4.0 2.5 1.1 3057 chr3L 14725575 intron ome + chr3L 14727104 intron ome + chr3L 14728632 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-42 1053 chr3L 14740871 14740921 chr3L 14740980 14741030 18 109 6.5 4.0 5.2 2.9 159 chr3L 14740871 intron ome + chr3L 14740950 intron ome + chr3L 14741030 intron ome + chr3L_18_14740001 chr3L_14740001 RAL-42 1054 chr3L 14883287 14883337 chr3L 14883387 14883437 9 100 1.0 2.0 1.5 3.6 150 chr3L 14883287 intergenic not near genes chr3L 14883362 intergenic not near genes chr3L 14883437 intergenic not near genes chr3L_9_14880001 chr3L_14880001 RAL-42 1055 chr3L 14924929 14924963 chr3L 14925084 14925118 9 155 1.5 4.5 3.0 2.2 189 chr3L 14924929 intron DCX-EMAP + chr3L 14925024 intron DCX-EMAP + chr3L 14925118 intron DCX-EMAP + chr3L_9_14925001 chr3L_14925001 RAL-42 1056 chr3L 14933432 14933452 chr3L 14933534 14933554 8 102 4.5 5.5 5.0 1.3 122 chr3L 14933432 intron DCX-EMAP + chr3L 14933493 intron DCX-EMAP + chr3L 14933554 intron DCX-EMAP + chr3L_8_14930001 chr3L_14930001 RAL-42 1057 chr3L 14970749 14970765 chr3L 14971081 14971097 F-element 6 332 0.0 8.0 4.0 1.2 348 chr3L 14970749 intergenic Tom + chr3L 14970923 intergenic not near genes chr3L 14971097 intergenic not near genes chr3L_6_14970001 chr3L_14970001 RAL-42 1058 chr3L 15085032 15085082 chr3L 15086218 15086266 1360 13 1181 4.0 2.5 3.2 3.1 1234 chr3L 15085032 intron cp309 - chr3L 15085649 intron cp309 - chr3L 15086266 intron cp309 - chr3L_13_15085001 chr3L_15085001 RAL-42 1059 chr3L 15105059 15105103 chr3L 15105181 15105228 13 118 2.0 6.5 4.2 2.5 169 chr3L 15105059 intron CTPsyn + chr3L 15105144 intron CTPsyn + chr3L 15105228 intron CTPsyn + chr3L_13_15105001 chr3L_15105001 RAL-42 1060 chr3L 15151196 15151241 chr3L 15151400 15151445 18 204 6.0 5.0 5.5 2.8 249 chr3L 15151196 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151445 intron FucTA + chr3L_18_15150001 chr3L_15150001 RAL-42 1061 chr3L 15257410 15257448 chr3L 15257643 15257681 16 232 3.5 3.0 3.2 3.8 271 chr3L 15257410 intergenic not near genes chr3L 15257546 intergenic not near genes chr3L 15257681 intergenic not near genes chr3L_16_15255001 chr3L_15255001 RAL-42 1062 chr3L 15273344 15273358 chr3L 15273510 15273524 11 166 1.5 10.0 5.8 1.6 180 chr3L 15273344 intergenic not near genes chr3L 15273434 intergenic not near genes chr3L 15273524 intergenic not near genes chr3L_11_15270001 chr3L_15270001 RAL-42 1063 chr3L 15284550 15284597 chr3L 15284649 15284691 10 93 3.5 7.0 5.2 1.6 141 chr3L 15284550 intergenic not near genes chr3L 15284620 intergenic not near genes chr3L 15284691 intergenic not near genes chr3L_10_15280001 chr3L_15280001 RAL-42 1064 chr3L 15315648 15315689 chr3L 15316845 15316886 11 1195 2.0 2.5 2.2 3.4 1238 chr3L 15315648 intergenic not near genes chr3L 15316267 intergenic not near genes chr3L 15316886 intergenic not near genes chr3L_11_15315001 chr3L_15315001 RAL-42 1065 chr3L 15333206 15333220 chr3L 15333310 15333324 4 104 5.5 1.5 3.5 0.9 118 chr3L 15333206 intergenic CR43247 + chr3L 15333265 intergenic CR43247 + chr3L 15333324 intergenic CR43247 + chr3L_4_15330001 chr3L_15330001 RAL-42 1066 chr3L 15423740 15423783 chr3L 15426604 15426646 opus 9 2864 3.5 2.0 2.8 2.4 2906 chr3L 15423740 intergenic not near genes chr3L 15425193 intergenic not near genes chr3L 15426646 intergenic not near genes chr3L_9_15425001 chr3L_15425001 RAL-42 1067 chr3L 15466021 15466128 chr3L 15466123 15466244 5 110 0.0 0.0 0.0 5.0 223 chr3L 15466021 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466244 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-42 1068 chr3L 15482583 15482606 chr3L 15482684 15482707 5 101 3.0 1.0 2.0 1.7 124 chr3L 15482583 intergenic not near genes chr3L 15482645 intergenic not near genes chr3L 15482707 intergenic not near genes chr3L_5_15480001 chr3L_15480001 RAL-42 1069 chr3L 15545989 15546018 chr3L 15546085 15546114 7 96 3.0 2.5 2.8 1.8 125 chr3L 15545989 intron CrebA + chr3L 15546052 intron CrebA + chr3L 15546114 intron CrebA + chr3L_7_15545001 chr3L_15545001 RAL-42 1070 chr3L 15550662 15550715 chr3L 15554085 15554138 11 3423 32.0 18.0 25.0 0.4 3476 chr3L 15550662 intron CrebA + chr3L 15552400 3` UTR CrebA + chr3L 15554138 5` UTR AGO2 + chr3L_11_15550001 chr3L_15550001 RAL-42 1071 chr3L 15554903 15554952 chr3L 15556710 15556759 S-element 25 1807 7.0 6.5 6.8 3.2 1856 chr3L 15554903 intron AGO2 + chr3L 15555831 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_25_15555001 chr3L_15555001 RAL-42 1072 chr3L 15600148 15600196 chr3L 15600253 15600317 9 117 2.5 0.0 1.2 4.1 169 chr3L 15600148 intron RhoGAP71E + chr3L 15600232 intron RhoGAP71E + chr3L 15600317 intron RhoGAP71E + chr3L_9_15600001 chr3L_15600001 RAL-42 1073 chr3L 15633164 15633213 chr3L 15633263 15633313 11 100 1.5 2.5 2.0 3.7 149 chr3L 15633164 intron comm3 - chr3L 15633238 intron comm3 - chr3L 15633313 intron comm3 - chr3L_11_15630001 chr3L_15630001 RAL-42 1074 chr3L 15744589 15744610 chr3L 15745043 15745064 8 456 27.5 31.0 29.2 0.3 475 chr3L 15744589 intergenic not near genes chr3L 15744826 intergenic not near genes chr3L 15745064 intergenic not near genes chr3L_8_15740001 chr3L_15740001 RAL-42 1075 chr3L 15760697 15760715 chr3L 15760801 15760819 7 103 7.5 10.5 9.0 0.7 122 chr3L 15760697 intergenic not near genes chr3L 15760758 intergenic not near genes chr3L 15760819 intergenic not near genes chr3L_7_15760001 chr3L_15760001 RAL-42 1076 chr3L 15840416 15840466 chr3L 15840524 15840557 4 100 5.5 1.5 3.5 0.9 141 chr3L 15840416 intron CG32150 - chr3L 15840486 intron CG32150 - chr3L 15840557 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-42 1077 chr3L 16015816 16015864 chr3L 16015912 16015922 16 95 7.0 4.0 5.5 2.5 106 chr3L 16015816 intergenic not near genes chr3L 16015869 intergenic not near genes chr3L 16015922 intergenic not near genes chr3L_16_16015001 chr3L_16015001 RAL-42 1078 chr3L 16162590 16162615 chr3L 16162694 16162719 4 102 2.0 1.5 1.8 1.4 129 chr3L 16162590 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162719 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-42 1079 chr3L 16184066 16184121 chr3L 16188930 16188953 X-element 26 4856 7.0 6.5 6.8 3.3 4887 chr3L 16184066 intergenic not near genes chr3L 16186510 intergenic not near genes chr3L 16188953 intergenic not near genes chr3L_26_16185001 chr3L_16185001 RAL-42 1080 chr3L 16304865 16304889 chr3L 16304963 16304987 5 98 1.5 11.5 6.5 0.7 122 chr3L 16304865 intergenic CG43249 +,CG13043 - chr3L 16304926 intergenic CG43249 +,CG13043 - chr3L 16304987 intergenic CG13043 -,CG43249 + chr3L_5_16300001 chr3L_16300001 RAL-42 1081 chr3L 16322803 16322853 chr3L 16322913 16322960 17 108 7.0 2.5 4.8 2.9 157 chr3L 16322803 intergenic not near genes chr3L 16322882 intergenic not near genes chr3L 16322960 intergenic not near genes chr3L_17_16320001 chr3L_16320001 RAL-42 1082 chr3L 16437050 16437101 chr3L 16437149 16437207 13 104 6.0 0.5 3.2 3.1 157 chr3L 16437050 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437207 intron,intron CG33158 +,dsx-c73A - chr3L_13_16435001 chr3L_16435001 RAL-42 1083 chr3L 16457508 16457536 chr3L 16457624 16457651 4 115 3.5 2.0 2.8 1.1 143 chr3L 16457508 intron CG33158 + chr3L 16457580 intron CG33158 + chr3L 16457651 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-42 1084 chr3L 16493977 16494005 chr3L 16494493 16494532 jockey 6 524 4.5 6.0 5.2 1.0 555 chr3L 16493977 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494254 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494532 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-42 1085 chr3L 16540038 16540079 chr3L 16540146 16540169 10 106 4.5 2.0 3.2 2.4 131 chr3L 16540038 intron CG43373 - chr3L 16540104 intron CG43373 - chr3L 16540169 intron CG43373 - chr3L_10_16540001 chr3L_16540001 RAL-42 1086 chr3L 16560291 16560334 chr3L 16560387 16560439 5 99 2.0 2.5 2.2 1.6 148 chr3L 16560291 intergenic not near genes chr3L 16560365 intergenic not near genes chr3L 16560439 intergenic not near genes chr3L_5_16560001 chr3L_16560001 RAL-42 1087 chr3L 16616497 16616528 chr3L 16621845 16621874 297 5 5347 4.0 2.0 3.0 1.2 5377 chr3L 16616497 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621874 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-42 1088 chr3L 16684000 16684046 chr3L 16689241 16689287 copia 14 5241 7.0 3.5 5.2 2.3 5287 chr3L 16684000 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689287 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_14_16685001 chr3L_16685001 RAL-42 1089 chr3L 16714823 16714872 chr3L 16714927 16714976 19 104 7.5 4.5 6.0 2.7 153 chr3L 16714823 intron Dab + chr3L 16714900 intron Dab + chr3L 16714976 intron Dab + chr3L_19_16710001 chr3L_16710001 RAL-42 1090 chr3L 16728081 16728104 chr3L 16728186 16728217 5 108 5.5 0.0 2.8 1.3 136 chr3L 16728081 intergenic PGRP-SB1 -,Dbp73D - chr3L 16728149 intergenic PGRP-SB1 -,Dbp73D - chr3L 16728217 intergenic PGRP-SB1 -,Dbp73D - chr3L_5_16725001 chr3L_16725001 RAL-42 1091 chr3L 16739354 16739406 chr3L 16739473 16739518 4 112 0.0 6.0 3.0 1.0 164 chr3L 16739354 3` UTR CG9701 + chr3L 16739436 intergenic CG9701 + chr3L 16739518 intergenic CG9701 + chr3L_4_16735001 chr3L_16735001 RAL-42 1092 chr3L 16785104 16785108 chr3L 16785208 16785212 4 104 10.5 6.5 8.5 0.4 108 chr3L 16785104 3` UTR CG9706 + chr3L 16785158 3` UTR CG9706 + chr3L 16785212 3` UTR CG9706 + chr3L_4_16785001 chr3L_16785001 RAL-42 1093 chr3L 16785111 16785123 chr3L 16785205 16785217 6 99 8.5 6.5 7.5 0.7 106 chr3L 16785111 3` UTR CG9706 + chr3L 16785164 3` UTR CG9706 + chr3L 16785217 3` UTR CG9706 + chr3L_6_16785001 chr3L_16785001 RAL-42 1094 chr3L 16808021 16808045 chr3L 16808117 16808141 4 96 6.5 2.0 4.2 0.8 120 chr3L 16808021 intron nudC + chr3L 16808081 intron nudC + chr3L 16808141 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-42 1095 chr3L 16818727 16818779 chr3L 16818823 16818875 15 96 2.0 2.5 2.2 4.7 148 chr3L 16818727 intron,intron nudC +,CG13024 - chr3L 16818801 intron,intron nudC +,CG13024 - chr3L 16818875 intron,intron nudC +,CG13024 - chr3L_15_16815001 chr3L_16815001 RAL-42 1096 chr3L 16836904 16836938 chr3L 16837022 16837056 4 115 1.5 3.0 2.2 1.2 152 chr3L 16836904 intergenic not near genes chr3L 16836980 intergenic not near genes chr3L 16837056 intergenic not near genes chr3L_4_16835001 chr3L_16835001 RAL-42 1097 chr3L 16845005 16845045 chr3L 16845138 16845178 15 133 1.5 5.0 3.2 3.6 173 chr3L 16845005 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845178 intergenic CG9669 -,CG9715 + chr3L_15_16845001 chr3L_16845001 RAL-42 1098 chr3L 16917565 16917604 chr3L 16917688 16917727 16 123 2.5 7.0 4.8 2.8 162 chr3L 16917565 intron Lmpt + chr3L 16917646 intron Lmpt + chr3L 16917727 intron Lmpt + chr3L_16_16915001 chr3L_16915001 RAL-42 1099 chr3L 16945711 16945758 chr3L 16954882 16954893 roo 6 9162 3.0 0.5 1.8 2.1 9182 chr3L 16945711 exon Obp73a + chr3L 16950302 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-42 1100 chr3L 17034916 17034965 chr3L 17035124 17035173 G2 22 207 3.0 8.0 5.5 3.4 257 chr3L 17034916 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035173 intergenic beg + chr3L_22_17035001 chr3L_17035001 RAL-42 1101 chr3L 17084985 17085032 chr3L 17094154 17094194 roo 10 9168 4.0 3.0 3.5 2.2 9209 chr3L 17084985 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094194 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-42 1102 chr3L 17113849 17113889 chr3L 17113954 17113994 6 105 4.0 5.5 4.8 1.0 145 chr3L 17113849 intron Rbp6 - chr3L 17113922 intron Rbp6 - chr3L 17113994 intron Rbp6 - chr3L_6_17110001 chr3L_17110001 RAL-42 1103 chr3L 17167963 17167992 chr3L 17168088 17168117 6 122 2.5 4.0 3.2 1.4 154 chr3L 17167963 intron Rbp6 - chr3L 17168040 intron Rbp6 - chr3L 17168117 intron Rbp6 - chr3L_6_17165001 chr3L_17165001 RAL-42 1104 chr3L 17280073 17280123 chr3L 17280181 17280231 7 108 1.5 1.5 1.5 2.8 158 chr3L 17280073 intergenic not near genes chr3L 17280152 intergenic not near genes chr3L 17280231 intergenic not near genes chr3L_7_17280001 chr3L_17280001 RAL-42 1105 chr3L 17320869 17320910 chr3L 17320976 17321017 18 107 8.5 8.5 8.5 1.9 148 chr3L 17320869 intergenic CG6485 - chr3L 17320943 intergenic CG6485 - chr3L 17321017 intergenic CG6485 - chr3L_18_17320001 chr3L_17320001 RAL-42 1106 chr3L 17332891 17332899 chr3L 17332957 17332981 4 86 4.5 1.0 2.8 1.1 90 chr3L 17332891 intergenic not near genes chr3L 17332936 intergenic not near genes chr3L 17332981 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-42 1107 chr3L 17492460 17492509 chr3L 17492789 17492838 9 327 1.0 1.5 1.2 4.1 378 chr3L 17492460 intron Oatp74D + chr3L 17492649 intron Oatp74D + chr3L 17492838 intron Oatp74D + chr3L_9_17490001 chr3L_17490001 RAL-42 1108 chr3L 17510738 17510760 chr3L 17510839 17510864 5 103 3.0 8.0 5.5 0.8 126 chr3L 17510738 exon Oatp74D + chr3L 17510801 intron Oatp74D + chr3L 17510864 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-42 1109 chr3L 17547563 17547611 chr3L 17547680 17547728 14 116 3.0 3.0 3.0 3.5 165 chr3L 17547563 intron Jon74E - chr3L 17547646 intron Jon74E - chr3L 17547728 intron Jon74E - chr3L_14_17545001 chr3L_17545001 RAL-42 1110 chr3L 17594221 17594274 chr3L 17594322 17594375 20 101 4.0 6.0 5.0 3.3 154 chr3L 17594221 intron Eip74EF - chr3L 17594298 intron Eip74EF - chr3L 17594375 intron Eip74EF - chr3L_20_17590001 chr3L_17590001 RAL-42 1111 chr3L 17595157 17595198 chr3L 17595279 17595341 8 134 3.5 0.0 1.8 2.9 184 chr3L 17595157 intron Eip74EF - chr3L 17595249 intron Eip74EF - chr3L 17595341 intron Eip74EF - chr3L_8_17595001 chr3L_17595001 RAL-42 1112 chr3L 17690832 17690886 chr3L 17690932 17690983 6 98 0.5 5.0 2.8 1.6 151 chr3L 17690832 intron Ccn + chr3L 17690908 intron Ccn + chr3L 17690983 intron Ccn + chr3L_6_17690001 chr3L_17690001 RAL-42 1113 chr3L 17730830 17730878 chr3L 17738180 17738228 mdg1 23 7350 4.5 3.0 3.8 4.8 7398 chr3L 17730830 intron Ccn + chr3L 17734529 intron Ccn + chr3L 17738228 intron Ccn + chr3L_23_17730001 chr3L_17730001 RAL-42 1114 chr3L 17753335 17753357 chr3L 17753441 17753463 11 106 3.0 6.5 4.8 1.9 128 chr3L 17753335 intron Adgf-A - chr3L 17753399 intron Adgf-A - chr3L 17753463 intron Adgf-A - chr3L_11_17750001 chr3L_17750001 RAL-42 1115 chr3L 17790583 17790636 chr3L 17790868 17790921 15 283 4.0 3.0 3.5 3.3 338 chr3L 17790583 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790921 intergenic CG42815 - chr3L_15_17790001 chr3L_17790001 RAL-42 1116 chr3L 17799790 17799842 chr3L 17801599 17801651 S-element 26 1809 9.5 6.0 7.8 3.0 1861 chr3L 17799790 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801651 intron NUCB1 - chr3L_26_17800001 chr3L_17800001 RAL-42 1117 chr3L 17884684 17884710 chr3L 17884804 17884830 4 120 6.5 4.0 5.2 0.6 146 chr3L 17884684 intergenic CG5506 - chr3L 17884757 intergenic CG5506 - chr3L 17884830 intergenic CG5506 - chr3L_4_17880001 chr3L_17880001 RAL-42 1118 chr3L 17887858 17887867 chr3L 17887963 17887972 4 105 4.0 7.0 5.5 0.6 114 chr3L 17887858 intron CG7402 + chr3L 17887915 intron CG7402 + chr3L 17887972 intron CG7402 + chr3L_4_17885001 chr3L_17885001 RAL-42 1119 chr3L 17918367 17918402 chr3L 17921191 17921226 opus 7 2823 2.0 3.0 2.5 2.0 2859 chr3L 17918367 intergenic not near genes chr3L 17919796 intergenic not near genes chr3L 17921226 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-42 1120 chr3L 17991559 17991588 chr3L 17991657 17991686 9 98 7.0 6.0 6.5 1.2 127 chr3L 17991559 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991686 intron Eip75B - chr3L_9_17990001 chr3L_17990001 RAL-42 1121 chr3L 18047700 18047735 chr3L 18056777 18056811 roo 9 9077 8.0 6.0 7.0 1.1 9111 chr3L 18047700 intron Eip75B - chr3L 18052256 intron Eip75B - chr3L 18056811 intron Eip75B - chr3L_9_18050001 chr3L_18050001 RAL-42 1122 chr3L 18064045 18064075 chr3L 18064151 18064181 4 106 5.5 7.0 6.2 0.6 136 chr3L 18064045 intron Eip75B - chr3L 18064113 intron Eip75B - chr3L 18064181 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-42 1123 chr3L 18081006 18081018 chr3L 18081108 18081120 5 102 5.0 5.0 5.0 0.8 114 chr3L 18081006 intergenic CR43253 - chr3L 18081063 intergenic CR43253 - chr3L 18081120 3` UTR CR43253 - chr3L_5_18080001 chr3L_18080001 RAL-42 1124 chr3L 18119658 18119673 chr3L 18119776 18119791 4 118 0.0 6.5 3.2 1.0 133 chr3L 18119658 intron CG7341 + chr3L 18119724 intron CG7341 + chr3L 18119791 5` UTR CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-42 1125 chr3L 18172672 18172701 chr3L 18172768 18172797 24 96 8.5 6.5 7.5 2.8 125 chr3L 18172672 intron W - chr3L 18172734 intron W - chr3L 18172797 intron W - chr3L_24_18170001 chr3L_18170001 RAL-42 1126 chr3L 18214515 18214550 chr3L 18214611 18214646 5 96 4.5 2.0 3.2 1.2 131 chr3L 18214515 intergenic not near genes chr3L 18214580 intergenic not near genes chr3L 18214646 intergenic not near genes chr3L_5_18210001 chr3L_18210001 RAL-42 1127 chr3L 18226661 18226668 chr3L 18226772 18226779 4 111 2.0 5.0 3.5 0.9 118 chr3L 18226661 intergenic not near genes chr3L 18226720 intergenic not near genes chr3L 18226779 intergenic not near genes chr3L_4_18225001 chr3L_18225001 RAL-42 1128 chr3L 18359580 18359618 chr3L 18359692 18359730 5 112 1.0 0.0 0.5 3.3 150 chr3L 18359580 intergenic not near genes chr3L 18359655 intergenic not near genes chr3L 18359730 intergenic not near genes chr3L_5_18355001 chr3L_18355001 RAL-42 1129 chr3L 18408719 18408759 chr3L 18408825 18408865 9 106 3.0 3.5 3.2 2.1 146 chr3L 18408719 intergenic not near genes chr3L 18408792 intergenic not near genes chr3L 18408865 intergenic not near genes chr3L_9_18405001 chr3L_18405001 RAL-42 1130 chr3L 18456257 18456300 chr3L 18456365 18456408 7 108 1.5 1.0 1.2 3.2 151 chr3L 18456257 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456408 3` UTR CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-42 1131 chr3L 18501336 18501370 chr3L 18501469 18501501 5 130 2.0 3.0 2.5 1.4 165 chr3L 18501336 intron AstC-R2 - chr3L 18501418 intron AstC-R2 - chr3L 18501501 intron AstC-R2 - chr3L_5_18500001 chr3L_18500001 RAL-42 1132 chr3L 18506120 18506162 chr3L 18509603 18509637 F-element 10 3482 4.5 7.5 6.0 1.4 3517 chr3L 18506120 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509637 intergenic not near genes chr3L_10_18505001 chr3L_18505001 RAL-42 1133 chr3L 18528613 18528656 chr3L 18537794 18537837 roo 6 9181 4.0 5.0 4.5 1.1 9224 chr3L 18528613 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537837 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-42 1134 chr3L 18546705 18546721 chr3L 18546819 18546819 5 111 3.0 7.0 5.0 0.8 114 chr3L 18546705 intergenic not near genes chr3L 18546762 intergenic not near genes chr3L 18546819 intergenic not near genes chr3L_5_18545001 chr3L_18545001 RAL-42 1135 chr3L 18593933 18593964 chr3L 18595933 18595964 Doc 10 2000 3.0 1.0 2.0 3.3 2031 chr3L 18593933 intergenic term - chr3L 18594948 intergenic not near genes chr3L 18595964 intergenic CR45389 + chr3L_10_18590001 chr3L_18590001 RAL-42 1136 chr3L 18701112 18701137 chr3L 18701219 18701245 13 108 5.0 2.5 3.8 2.7 133 chr3L 18701112 intergenic not near genes chr3L 18701178 intergenic not near genes chr3L 18701245 intergenic not near genes chr3L_13_18700001 chr3L_18700001 RAL-42 1137 chr3L 18721765 18721804 chr3L 18721863 18721915 10 108 0.0 1.5 0.8 5.6 150 chr3L 18721765 intergenic CG12477 - chr3L 18721840 intergenic CG12477 - chr3L 18721915 3` UTR CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-42 1138 chr3L 18725045 18725081 chr3L 18725681 18725717 11 636 4.0 3.0 3.5 2.4 672 chr3L 18725045 intergenic not near genes chr3L 18725381 intergenic not near genes chr3L 18725717 intergenic not near genes chr3L_11_18725001 chr3L_18725001 RAL-42 1139 chr3L 18736043 18736062 chr3L 18736158 18736177 5 115 4.0 7.0 5.5 0.8 134 chr3L 18736043 intergenic not near genes chr3L 18736110 intergenic not near genes chr3L 18736177 intergenic not near genes chr3L_5_18735001 chr3L_18735001 RAL-42 1140 chr3L 18753527 18753561 chr3L 18753629 18753663 6 102 2.5 2.5 2.5 1.7 136 chr3L 18753527 intron ftz-f1 - chr3L 18753595 intron ftz-f1 - chr3L 18753663 intron ftz-f1 - chr3L_6_18750001 chr3L_18750001 RAL-42 1141 chr3L 18772394 18772429 chr3L 18781095 18781130 roo 11 8701 4.0 3.0 3.5 2.4 8736 chr3L 18772394 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781130 intron ftz-f1 - chr3L_11_18775001 chr3L_18775001 RAL-42 1142 chr3L 18843854 18843868 chr3L 18843964 18843986 4 116 5.5 3.0 4.2 0.8 132 chr3L 18843854 intron Indy - chr3L 18843920 intron Indy - chr3L 18843986 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-42 1143 chr3L 18924469 18924505 chr3L 18924560 18924601 4 95 5.0 7.5 6.2 0.6 132 chr3L 18924469 intron CG32204 - chr3L 18924535 intron CG32204 - chr3L 18924601 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-42 1144 chr3L 18959977 18960027 chr3L 18960078 18960128 8 101 2.5 3.0 2.8 2.1 151 chr3L 18959977 intergenic not near genes chr3L 18960052 intergenic not near genes chr3L 18960128 intergenic not near genes chr3L_8_18960001 chr3L_18960001 RAL-42 1145 chr3L 18962584 18962590 chr3L 18962684 18962690 5 100 10.0 2.5 6.2 0.7 106 chr3L 18962584 intergenic not near genes chr3L 18962637 intergenic not near genes chr3L 18962690 intergenic not near genes chr3L_5_18960001 chr3L_18960001 RAL-42 1146 chr3L 19015162 19015217 chr3L 19015266 19015310 8 97 1.5 2.0 1.8 2.9 148 chr3L 19015162 intron nkd - chr3L 19015236 intron nkd - chr3L 19015310 intron nkd - chr3L_8_19015001 chr3L_19015001 RAL-42 1147 chr3L 19018825 19018862 chr3L 19018936 19018973 8 111 1.0 4.0 2.5 2.3 148 chr3L 19018825 intron nkd - chr3L 19018899 intron nkd - chr3L 19018973 intron nkd - chr3L_8_19015001 chr3L_19015001 RAL-42 1148 chr3L 19115630 19115667 chr3L 19115820 19115851 BS 7 196 1.0 2.0 1.5 2.8 221 chr3L 19115630 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-42 1149 chr3L 19117028 19117050 chr3L 19124494 19124517 mdg1 8 7467 8.5 7.5 8.0 0.9 7489 chr3L 19117028 intron CG14082 - chr3L 19120772 intron CG14082 - chr3L 19124517 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-42 1150 chr3L 19164324 19164360 chr3L 19164427 19164463 6 102 1.0 1.0 1.0 3.0 139 chr3L 19164324 intron fz2 - chr3L 19164394 intron fz2 - chr3L 19164463 intron fz2 - chr3L_6_19160001 chr3L_19160001 RAL-42 1151 chr3L 19182368 19182419 chr3L 19182469 19182520 12 98 3.0 3.0 3.0 3.0 152 chr3L 19182368 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182520 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-42 1152 chr3L 19190064 19190106 chr3L 19190151 19190185 5 85 1.5 1.5 1.5 2.0 121 chr3L 19190064 intron fz2 - chr3L 19190124 intron fz2 - chr3L 19190185 intron fz2 - chr3L_5_19190001 chr3L_19190001 RAL-42 1153 chr3L 19248831 19248868 chr3L 19248941 19248978 8 110 5.5 3.5 4.5 1.5 147 chr3L 19248831 intergenic not near genes chr3L 19248904 intergenic not near genes chr3L 19248978 intergenic not near genes chr3L_8_19245001 chr3L_19245001 RAL-42 1154 chr3L 19262190 19262244 chr3L 19262292 19262346 18 102 4.0 6.0 5.0 3.0 156 chr3L 19262190 3` UTR Bet1 + chr3L 19262268 3` UTR,3` UTR Bet1 +,Max - chr3L 19262346 3` UTR,3` UTR Bet1 +,Max - chr3L_18_19260001 chr3L_19260001 RAL-42 1155 chr3L 19342743 19342768 chr3L 19342854 19342879 17 110 6.5 7.5 7.0 2.1 136 chr3L 19342743 3` UTR CG32206 - chr3L 19342811 3` UTR CG32206 - chr3L 19342879 3` UTR CG32206 - chr3L_17_19340001 chr3L_19340001 RAL-42 1156 chr3L 19417787 19417826 chr3L 19417881 19417926 6 98 2.0 0.0 1.0 3.0 139 chr3L 19417787 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417926 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-42 1157 chr3L 19488479 19488503 chr3L 19488581 19488605 15 102 10.5 13.5 12.0 1.2 126 chr3L 19488479 intergenic pncr009:3L -,CG32212 + chr3L 19488542 intergenic pncr009:3L -,CG32212 + chr3L 19488605 intergenic pncr009:3L -,CG32212 + chr3L_15_19485001 chr3L_19485001 RAL-42 1158 chr3L 19544219 19544266 chr3L 19544315 19544362 14 96 6.5 6.0 6.2 1.9 143 chr3L 19544219 intergenic CG9279 -,l(3)76BDr - chr3L 19544290 intergenic l(3)76BDr -,CG9279 - chr3L 19544362 3` UTR l(3)76BDr - chr3L_14_19540001 chr3L_19540001 RAL-42 1159 chr3L 19554797 19554844 chr3L 19554912 19554958 5 114 3.5 4.0 3.8 1.0 161 chr3L 19554797 intergenic CG9300 + chr3L 19554878 intergenic CG9300 + chr3L 19554958 intergenic CG9300 + chr3L_5_19550001 chr3L_19550001 RAL-42 1160 chr3L 19820280 19820303 chr3L 19827849 19827872 412 10 7569 10.0 3.5 6.8 1.3 7592 chr3L 19820280 intron Deaf1 + chr3L 19824076 intron Deaf1 + chr3L 19827872 intron Deaf1 + chr3L_10_19820001 chr3L_19820001 RAL-42 1161 chr3L 19845714 19845741 chr3L 19845820 19845848 9 106 3.5 2.0 2.8 2.4 134 chr3L 19845714 intron Papss + chr3L 19845781 intron Papss + chr3L 19845848 intron Papss + chr3L_9_19845001 chr3L_19845001 RAL-42 1162 chr3L 19848492 19848531 chr3L 19857702 19857741 roo 8 9208 3.0 5.0 4.0 1.6 9249 chr3L 19848492 intron Papss + chr3L 19853116 intron Papss + chr3L 19857741 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-42 1163 chr3L 19981188 19981231 chr3L 19981288 19981331 15 100 2.5 4.5 3.5 3.3 143 chr3L 19981188 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981331 intergenic CG17732 + chr3L_15_19980001 chr3L_19980001 RAL-42 1164 chr3L 19995166 19995193 chr3L 19995278 19995305 7 111 4.0 2.0 3.0 1.8 139 chr3L 19995166 intron,intron CG7646 +,Nca + chr3L 19995236 intron,intron CG7646 +,Nca + chr3L 19995305 intron,intron CG7646 +,Nca + chr3L_7_19995001 chr3L_19995001 RAL-42 1165 chr3L 20113396 20113441 chr3L 20113503 20113544 15 105 3.0 10.0 6.5 2.0 148 chr3L 20113396 intergenic not near genes chr3L 20113470 intergenic not near genes chr3L 20113544 intergenic not near genes chr3L_15_20110001 chr3L_20110001 RAL-42 1166 chr3L 20113646 20113685 chr3L 20122923 20122962 roo 17 9277 7.5 7.0 7.2 2.1 9316 chr3L 20113646 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122962 intergenic not near genes chr3L_17_20115001 chr3L_20115001 RAL-42 1167 chr3L 20143072 20143110 chr3L 20143172 20143210 6 100 6.0 3.5 4.8 1.0 138 chr3L 20143072 intergenic not near genes chr3L 20143141 intergenic not near genes chr3L 20143210 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-42 1168 chr3L 20148263 20148315 chr3L 20148373 20148425 9 110 6.0 7.0 6.5 1.2 162 chr3L 20148263 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148425 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-42 1169 chr3L 20158880 20158919 chr3L 20159042 20159081 7 162 7.0 3.5 5.2 1.1 201 chr3L 20158880 intron CG42674 - chr3L 20158980 intron CG42674 - chr3L 20159081 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-42 1170 chr3L 20206756 20206791 chr3L 20206848 20206893 10 100 6.0 6.0 6.0 1.4 137 chr3L 20206756 intergenic not near genes chr3L 20206824 intergenic not near genes chr3L 20206893 intergenic not near genes chr3L_10_20205001 chr3L_20205001 RAL-42 1171 chr3L 20257320 20257357 chr3L 20258461 20258498 pogo 6 1140 3.5 3.0 3.2 1.4 1178 chr3L 20257320 intron rdgC + chr3L 20257909 intron rdgC + chr3L 20258498 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-42 1172 chr3L 20345586 20345637 chr3L 20345687 20345738 13 99 2.5 7.0 4.8 2.2 152 chr3L 20345586 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345738 3` UTR Rbbp5 - chr3L_13_20345001 chr3L_20345001 RAL-42 1173 chr3L 20386924 20386972 chr3L 20387046 20387094 15 122 6.0 3.5 4.8 2.6 170 chr3L 20386924 intron fbl + chr3L 20387009 intron fbl + chr3L 20387094 intron fbl + chr3L_15_20385001 chr3L_20385001 RAL-42 1174 chr3L 20462568 20462602 chr3L 20462669 20462703 10 100 5.0 9.0 7.0 1.2 135 chr3L 20462568 intron atk - chr3L 20462636 intron atk - chr3L 20462703 intron atk - chr3L_10_20460001 chr3L_20460001 RAL-42 1175 chr3L 20476732 20476781 chr3L 20484351 20484400 springer 16 7619 5.5 5.5 5.5 2.5 7668 chr3L 20476732 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484400 3` UTR ZnT77C - chr3L_16_20480001 chr3L_20480001 RAL-42 1176 chr3L 20509150 20509173 chr3L 20509249 20509272 7 99 4.0 4.0 4.0 1.4 122 chr3L 20509150 intron CG32425 + chr3L 20509211 intron CG32425 + chr3L 20509272 intron CG32425 + chr3L_7_20505001 chr3L_20505001 RAL-42 1177 chr3L 20525228 20525228 chr3L 24821492 24821493 6 4296265 13.0 21.5 17.2 0.3 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-42 1178 chr3L 20525229 20525229 chr3L 24821492 24821495 9 4296265 13.0 21.5 17.2 0.5 4296266 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821495 intergenic not near genes chr3L_9_22670001 chr3L_22670001 RAL-42 1179 chr3L 20536309 20536327 chr3L 20536410 20536428 4 101 2.0 0.0 1.0 2.0 119 chr3L 20536309 intron Rcd2 - chr3L 20536368 intron Rcd2 - chr3L 20536428 intron Rcd2 - chr3L_4_20535001 chr3L_20535001 RAL-42 1180 chr3L 20548349 20548380 chr3L 20548459 20548489 5 109 3.0 3.5 3.2 1.2 140 chr3L 20548349 intergenic not near genes chr3L 20548419 intergenic not near genes chr3L 20548489 intergenic not near genes chr3L_5_20545001 chr3L_20545001 RAL-42 1181 chr3L 20678833 20678855 chr3L 20681028 20681050 6 2195 1.0 2.5 1.8 2.1 2217 chr3L 20678833 intergenic not near genes chr3L 20679942 intergenic not near genes chr3L 20681050 intergenic not near genes chr3L_6_20675001 chr3L_20675001 RAL-42 1182 chr3L 20710757 20710782 chr3L 20710854 20710879 4 94 6.0 2.0 4.0 0.8 122 chr3L 20710757 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710879 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-42 1183 chr3L 20821273 20821310 chr3L 20824762 20824799 NOF 9 3487 8.0 6.0 7.0 1.1 3526 chr3L 20821273 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824799 intron Pka-R1 + chr3L_9_20820001 chr3L_20820001 RAL-42 1184 chr3L 20849260 20849292 chr3L 20849359 20849391 11 99 6.0 4.0 5.0 1.8 131 chr3L 20849260 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849391 intron CG32432 - chr3L_11_20845001 chr3L_20845001 RAL-42 1185 chr3L 20858052 20858101 chr3L 20858171 20858220 16 118 4.5 7.0 5.8 2.4 168 chr3L 20858052 intron CG32432 - chr3L 20858136 intron CG32432 - chr3L 20858220 intron CG32432 - chr3L_16_20855001 chr3L_20855001 RAL-42 1186 chr3L 20914374 20914401 chr3L 20915049 20915083 5 670 20.0 27.0 23.5 0.2 709 chr3L 20914374 intergenic not near genes chr3L 20914728 intergenic not near genes chr3L 20915083 intergenic not near genes chr3L_5_20910001 chr3L_20910001 RAL-42 1187 chr3L 20986742 20986789 chr3L 20986837 20986845 8 88 3.5 5.5 4.5 1.5 103 chr3L 20986742 intergenic not near genes chr3L 20986794 intergenic not near genes chr3L 20986845 intergenic not near genes chr3L_8_20985001 chr3L_20985001 RAL-42 1188 chr3L 21040332 21040370 chr3L 21040806 21040844 4 474 4.0 3.0 3.5 0.9 512 chr3L 21040332 intron siz + chr3L 21040588 intron siz + chr3L 21040844 intron siz + chr3L_4_21040001 chr3L_21040001 RAL-42 1189 chr3L 21071297 21071345 chr3L 21071480 21071527 24 183 7.5 10.5 9.0 2.4 230 chr3L 21071297 intron siz + chr3L 21071412 intron siz + chr3L 21071527 intron siz + chr3L_24_21070001 chr3L_21070001 RAL-42 1190 chr3L 21151858 21151885 chr3L 21156962 21156989 flea 4 5104 1.5 3.5 2.5 1.1 5131 chr3L 21151858 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21156989 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-42 1191 chr3L 21172817 21172873 chr3L 21172937 21172960 6 115 1.0 2.5 1.8 2.1 143 chr3L 21172817 intergenic chb +,asparagine-synthetase + chr3L 21172888 5` UTR chb + chr3L 21172960 5` UTR chb + chr3L_6_21170001 chr3L_21170001 RAL-42 1192 chr3L 21301721 21301761 chr3L 21301818 21301866 14 99 6.5 2.5 4.5 2.5 145 chr3L 21301721 5` UTR CR45432 + chr3L 21301794 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301866 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_14_21300001 chr3L_21300001 RAL-42 1193 chr3L 21306128 21306178 chr3L 21315307 21315357 roo 14 9178 5.5 3.5 4.5 2.5 9229 chr3L 21306128 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315357 3` UTR Pc - chr3L_14_21310001 chr3L_21310001 RAL-42 1194 chr3L 21319529 21319536 chr3L 21319638 21319646 7 110 7.5 15.5 11.5 0.6 117 chr3L 21319529 5` UTR Rab26 + chr3L 21319588 5` UTR Rab26 + chr3L 21319646 5` UTR Rab26 + chr3L_7_21315001 chr3L_21315001 RAL-42 1195 chr3L 21319538 21319558 chr3L 21319628 21319668 8 106 2.5 14.0 8.2 0.9 130 chr3L 21319538 5` UTR Rab26 + chr3L 21319603 5` UTR Rab26 + chr3L 21319668 5` UTR Rab26 + chr3L_8_21315001 chr3L_21315001 RAL-42 1196 chr3L 21372701 21372728 chr3L 21379229 21379256 McClintock 7 6528 9.0 4.5 6.8 0.9 6555 chr3L 21372701 intergenic not near genes chr3L 21375978 intergenic not near genes chr3L 21379256 intergenic not near genes chr3L_7_21375001 chr3L_21375001 RAL-42 1197 chr3L 4341331 4341338 chr3L 21448026 21448026 12 17106693 17.0 19.5 18.2 0.6 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_12_12890001 chr3L_12890001 RAL-42 1198 chr3L 7201270 7201270 chr3L 21448026 21448026 4 14246756 14.5 19.5 17.0 0.2 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 RAL-42 1199 chr3L 16736388 16736393 chr3L 21448026 21448026 6 4711634 0.5 19.5 10.0 0.5 4711638 chr3L 16736388 intron CG9701 + chr3L 19092207 intergenic MESR6 + chr3L 21448026 3` UTR Syx7 + chr3L_6_19090001 chr3L_19090001 RAL-42 1200 chr3L 4341332 4341335 chr3L 21448027 21448027 11 17106694 17.0 20.0 18.5 0.6 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_11_12890001 chr3L_12890001 RAL-42 1201 chr3L 21498836 21498843 chr3L 21500482 21500484 1360 8 1650 8.5 8.0 8.2 0.9 1648 chr3L 21498836 intron Glg1 - chr3L 21499660 intron Glg1 - chr3L 21500484 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-42 1202 chr3L 21501154 21501169 chr3L 21501268 21501283 1360 8 114 8.5 16.0 12.2 0.6 129 chr3L 21501154 intron Glg1 - chr3L 21501218 intron Glg1 - chr3L 21501283 intron Glg1 - chr3L_8_21500001 chr3L_21500001 RAL-42 1203 chr3L 21637303 21637353 chr3L 21637410 21637460 24 107 7.0 9.0 8.0 2.7 157 chr3L 21637303 exon CG32444 + chr3L 21637382 intron CG32444 + chr3L 21637460 intron CG32444 + chr3L_24_21635001 chr3L_21635001 RAL-42 1204 chr3L 21671037 21671079 chr3L 21671205 21671243 19 165 4.5 5.0 4.8 3.3 206 chr3L 21671037 intergenic not near genes chr3L 21671140 intergenic not near genes chr3L 21671243 intergenic not near genes chr3L_19_21670001 chr3L_21670001 RAL-42 1205 chr3L 21736355 21736371 chr3L 21736556 21736590 6 217 0.5 5.0 2.8 1.6 235 chr3L 21736355 intergenic CR43888 + chr3L 21736472 intergenic CR43888 + chr3L 21736590 intergenic CR43888 + chr3L_6_21735001 chr3L_21735001 RAL-42 1206 chr3L 21758500 21758516 chr3L 21758880 21758899 6 379 27.0 25.0 26.0 0.2 399 chr3L 21758500 intron Syn1 - chr3L 21758700 intron Syn1 - chr3L 21758899 intron Syn1 - chr3L_6_21755001 chr3L_21755001 RAL-42 1207 chr3L 21769035 21769086 chr3L 21769142 21769193 11 106 2.0 4.0 3.0 2.8 158 chr3L 21769035 intron,intron Syn1 -,CG42689 + chr3L 21769114 intron,intron Syn1 -,CG42689 + chr3L 21769193 intron,intron Syn1 -,CG42689 + chr3L_11_21765001 chr3L_21765001 RAL-42 1208 chr3L 21776662 21776699 chr3L 21776769 21776806 10 107 4.5 5.5 5.0 1.7 144 chr3L 21776662 intron,intron CG42689 +,CG42552 + chr3L 21776734 intron,intron CG42689 +,CG42552 + chr3L 21776806 intron,intron CG42689 +,CG42552 + chr3L_10_21775001 chr3L_21775001 RAL-42 1209 chr3L 21798741 21798785 chr3L 21798850 21798894 23 109 9.0 4.0 6.5 3.1 153 chr3L 21798741 intergenic not near genes chr3L 21798818 intergenic not near genes chr3L 21798894 intergenic not near genes chr3L_23_21795001 chr3L_21795001 RAL-42 1210 chr3L 21799850 21799864 chr3L 21799958 21799972 7 107 7.0 12.5 9.8 0.6 122 chr3L 21799850 intergenic not near genes chr3L 21799911 intergenic not near genes chr3L 21799972 intergenic not near genes chr3L_7_21795001 chr3L_21795001 RAL-42 1211 chr3L 21975658 21975712 chr3L 21975912 21975966 15 254 3.0 0.5 1.8 5.4 308 chr3L 21975658 intron CG7470 + chr3L 21975812 intron CG7470 + chr3L 21975966 intron CG7470 + chr3L_15_21975001 chr3L_21975001 RAL-42 1212 chr3L 22033668 22033714 chr3L 22033766 22033812 6 98 3.5 2.5 3.0 1.5 144 chr3L 22033668 intergenic not near genes chr3L 22033740 intergenic not near genes chr3L 22033812 intergenic not near genes chr3L_6_22030001 chr3L_22030001 RAL-42 1213 chr3L 22099656 22099701 chr3L 22105862 22105907 3S18 27 6206 7.5 5.0 6.2 3.8 6251 chr3L 22099656 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105907 intergenic not near genes chr3L_27_22100001 chr3L_22100001 RAL-42 1214 chr3L 22130480 22130522 chr3L 22130646 22130688 21 165 4.0 4.0 4.0 4.2 208 chr3L 22130480 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130688 intergenic not near genes chr3L_21_22130001 chr3L_22130001 RAL-42 1215 chr3L 22255883 22255931 chr3L 22255983 22256026 8 98 4.0 3.0 3.5 1.8 143 chr3L 22255883 intergenic not near genes chr3L 22255954 intergenic not near genes chr3L 22256026 intergenic not near genes chr3L_8_22255001 chr3L_22255001 RAL-42 1216 chr3L 22309074 22309092 chr3L 22309156 22309186 6 97 0.5 1.5 1.0 3.0 112 chr3L 22309074 intron Ten-m - chr3L 22309130 intron Ten-m - chr3L 22309186 intron Ten-m - chr3L_6_22305001 chr3L_22305001 RAL-42 1217 chr3L 22366692 22366731 chr3L 22366790 22366829 7 98 2.5 1.5 2.0 2.3 137 chr3L 22366692 intron Ten-m - chr3L 22366760 intron Ten-m - chr3L 22366829 intron Ten-m - chr3L_7_22365001 chr3L_22365001 RAL-42 1218 chr3L 22475963 22476001 chr3L 22476319 22476356 9 354 11.5 4.0 7.8 1.0 393 chr3L 22475963 intergenic CG11425 + chr3L 22476160 intergenic CG11425 + chr3L 22476356 intergenic not near genes chr3L_9_22475001 chr3L_22475001 RAL-42 1219 chr3L 22555749 22555802 chr3L 22563239 22563281 blood 7 7483 1.5 1.5 1.5 2.8 7532 chr3L 22555749 intergenic not near genes chr3L 22559515 intergenic not near genes chr3L 22563281 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-42 1220 chr3L 22577617 22577646 chr3L 22582403 22582453 Doc 5 4802 1.5 2.5 2.0 1.7 4836 chr3L 22577617 intergenic not near genes chr3L 22580035 intergenic not near genes chr3L 22582453 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-42 1221 chr3L 22617170 22617181 chr3L 22624642 22624653 blood 4 7472 9.5 6.0 7.8 0.5 7483 chr3L 22617170 intron CG14459 - chr3L 22620912 intron CG14459 - chr3L 22624653 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-42 1222 chr3L 22617185 22617222 chr3L 22624641 22624689 blood 15 7467 4.0 6.0 5.0 2.5 7504 chr3L 22617185 intron CG14459 - chr3L 22620937 intron CG14459 - chr3L 22624689 intron CG14459 - chr3L_15_22620001 chr3L_22620001 RAL-42 1223 chr3L 22732447 22732495 chr3L 22732548 22732596 14 101 3.5 3.0 3.2 3.3 149 chr3L 22732447 intron CG11367 + chr3L 22732522 intron CG11367 + chr3L 22732596 exon CG11367 + chr3L_14_22730001 chr3L_22730001 RAL-42 1224 chr3L 22761373 22761407 chr3L 22766824 22766861 Ivk 9 5453 5.5 1.5 3.5 2.0 5488 chr3L 22761373 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766861 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-42 1225 chr3L 22771650 22771666 chr3L 22771742 22771768 4 100 1.5 3.0 2.2 1.2 118 chr3L 22771650 intron SPoCk + chr3L 22771709 intron SPoCk + chr3L 22771768 intron SPoCk + chr3L_4_22770001 chr3L_22770001 RAL-42 1226 chr3L 22838586 22838617 chr3L 22838674 22838712 8 93 2.0 4.0 3.0 2.0 126 chr3L 22838586 intergenic CG11226 + chr3L 22838649 intergenic CG11226 + chr3L 22838712 intergenic not near genes chr3L_8_22835001 chr3L_22835001 RAL-42 1227 chr3L 22853672 22853721 chr3L 22853778 22853827 12 105 3.0 4.0 3.5 2.7 155 chr3L 22853672 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853827 5` UTR CR43426 + chr3L_12_22850001 chr3L_22850001 RAL-42 1228 chr3L 22865965 22866008 chr3L 22867118 22867161 Doc 12 1153 9.5 6.0 7.8 1.4 1196 chr3L 22865965 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867161 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-42 1229 chr3L 22897177 22897225 chr3L 22897280 22897309 12 96 2.0 2.5 2.2 3.8 132 chr3L 22897177 intergenic not near genes chr3L 22897243 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_12_22895001 chr3L_22895001 RAL-42 1230 chr3L 20525228 20525230 chr3L 22908066 22908066 11 2382837 12.5 18.5 15.5 0.7 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_11_21715001 chr3L_21715001 RAL-42 1231 chr3L 22908066 22908066 chr3L 24821492 24821494 10 1913428 18.0 21.5 19.8 0.5 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_10_23860001 chr3L_23860001 RAL-42 1232 chr3L 20525228 20525230 chr3L 22908067 22908067 7 2382837 12.5 18.5 15.5 0.4 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-42 1233 chr3L 22908067 22908067 chr3L 24821492 24821494 4 1913426 18.0 21.5 19.8 0.2 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-42 1234 chr3L 22909000 22909053 chr3L 22909111 22909163 22 109 3.5 3.5 3.5 4.9 163 chr3L 22909000 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909163 intergenic CR45661 + chr3L_22_22905001 chr3L_22905001 RAL-42 1235 chr3L 22930370 22930400 chr3L 22930493 22930523 8 121 1.5 6.0 3.8 1.7 153 chr3L 22930370 intergenic not near genes chr3L 22930446 intergenic not near genes chr3L 22930523 intergenic not near genes chr3L_8_22930001 chr3L_22930001 RAL-42 1236 chr3L 23251926 23251959 chr3L 23252063 23252096 7 136 2.0 1.5 1.8 2.5 170 chr3L 23251926 intron nAChRalpha4 + chr3L 23252011 intron nAChRalpha4 + chr3L 23252096 intron nAChRalpha4 + chr3L_7_23250001 chr3L_23250001 RAL-42 1237 chr3L 23288923 23288966 chr3L 23289071 23289075 6 139 2.5 1.5 2.0 2.0 152 chr3L 23288923 intergenic not near genes chr3L 23288999 intergenic not near genes chr3L 23289075 intergenic not near genes chr3L_6_23285001 chr3L_23285001 RAL-42 1238 chr3L 23816680 23816702 chr3L 23816780 23816803 8 101 4.5 1.0 2.8 2.1 123 chr3L 23816680 intergenic not near genes chr3L 23816742 intergenic not near genes chr3L 23816803 intergenic not near genes chr3L_8_23815001 chr3L_23815001 RAL-42 1239 chr3L 24012393 24012426 chr3L 24020751 24020787 roo 5 8357 1.5 1.0 1.2 2.3 8394 chr3L 24012393 intergenic not near genes chr3L 24016590 intergenic not near genes chr3L 24020787 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-42 1240 chr3L 24021264 24021300 chr3L 24022437 24022477 1360 8 1174 1.5 2.0 1.8 2.9 1213 chr3L 24021264 intergenic not near genes chr3L 24021870 intergenic not near genes chr3L 24022477 intergenic not near genes chr3L_8_24020001 chr3L_24020001 RAL-42 1241 chr3L 24324280 24324302 chr3L 24324395 24324412 4 112 2.5 0.5 1.5 1.6 132 chr3L 24324280 intergenic not near genes chr3L 24324346 intergenic not near genes chr3L 24324412 intergenic nvd + chr3L_4_24320001 chr3L_24320001 RAL-42 1242 chr3L 24363218 24363256 chr3L 24363316 24363354 7 98 5.5 4.0 4.8 1.2 136 chr3L 24363218 intron nvd + chr3L 24363286 intron nvd + chr3L 24363354 intron nvd + chr3L_7_24360001 chr3L_24360001 RAL-42 1243 chr3L 24791882 24791913 chr3L 24796681 24796712 Doc 6 4799 2.5 2.0 2.2 1.9 4830 chr3L 24791882 intergenic not near genes chr3L 24794297 intergenic not near genes chr3L 24796712 intergenic not near genes chr3L_6_24790001 chr3L_24790001 RAL-42 1244 chr3L 20525229 20525230 chr3L 24821492 24821492 4 4296262 12.5 21.5 17.0 0.2 4296263 chr3L 20525229 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-42 1245 chr3L 20525228 20525230 chr3L 24821493 24821493 7 4296264 12.5 21.5 17.0 0.4 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_7_22670001 chr3L_22670001 RAL-42 1246 chr3L 20525228 20525231 chr3L 24821494 24821494 4 4296265 12.5 21.0 16.8 0.2 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-42 1247 chr3L 27174397 27174424 chr3L 27174507 27174534 4 110 2.5 6.5 4.5 0.7 137 chr3L 27174397 intergenic not near genes chr3L 27174466 intergenic not near genes chr3L 27174534 intergenic not near genes chr3L_4_27170001 chr3L_27170001 RAL-42 1248 chr3L 27390673 27390696 chr3L 27390772 27390795 4 99 6.5 7.5 7.0 0.5 122 chr3L 27390673 intron Dbp80 + chr3L 27390734 intron Dbp80 + chr3L 27390795 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-42 1249 chr3R 97106 97112 chr3R 99845 99851 6 2737 4.5 9.0 6.8 0.8 2745 chr3R 97106 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99851 intergenic not near genes chr3R_6_95001 chr3R_95001 RAL-42 1250 chr3R 4132881 4132928 chr3R 4133055 4133102 15 174 2.5 2.0 2.2 4.7 221 chr3R 4132881 5` UTR Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133102 intron Gfat1 + chr3R_15_4130001 chr3R_4130001 RAL-42 1251 chr3R 4206054 4206103 chr3R 4211649 4211698 mdg3 20 5594 6.5 4.0 5.2 3.2 5644 chr3R 4206054 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211698 intron CG14636 - chr3R_20_4205001 chr3R_4205001 RAL-42 1252 chr3R 4366739 4366789 chr3R 4375142 4375192 roo 12 8402 4.0 3.5 3.8 2.5 8453 chr3R 4366739 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375192 5` UTR CR44922 + chr3R_12_4370001 chr3R_4370001 RAL-42 1253 chr3R 4408397 4408435 chr3R 4412721 4412759 Juan 8 4324 5.5 7.0 6.2 1.1 4362 chr3R 4408397 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412759 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-42 1254 chr3R 4609535 4609578 chr3R 4610709 4610762 1360 9 1182 3.5 2.5 3.0 2.2 1227 chr3R 4609535 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610762 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-42 1255 chr3R 4722332 4722373 chr3R 4722489 4722523 13 155 7.5 7.0 7.2 1.6 191 chr3R 4722332 intron Nep2 - chr3R 4722428 intron Nep2 - chr3R 4722523 intron Nep2 - chr3R_13_4720001 chr3R_4720001 RAL-42 1256 chr3R 4739111 4739147 chr3R 4739202 4739244 7 96 1.0 0.5 0.8 3.9 133 chr3R 4739111 intron tacc - chr3R 4739178 intron tacc - chr3R 4739244 intron tacc - chr3R_7_4735001 chr3R_4735001 RAL-42 1257 chr3R 4769146 4769187 chr3R 4769243 4769285 13 98 4.0 5.5 4.8 2.2 139 chr3R 4769146 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769285 intron,intron atms +,CG44098 - chr3R_13_4765001 chr3R_4765001 RAL-42 1258 chr3R 4887473 4887500 chr3R 4894869 4894879 rover 5 7393 3.5 3.0 3.2 1.2 7406 chr3R 4887473 intergenic not near genes chr3R 4891176 intergenic not near genes chr3R 4894879 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-42 1259 chr3R 4975917 4975963 chr3R 4976038 4976084 7 121 6.5 4.5 5.5 1.1 167 chr3R 4975917 intergenic not near genes chr3R 4976000 intergenic not near genes chr3R 4976084 intergenic not near genes chr3R_7_4975001 chr3R_4975001 RAL-42 1260 chr3R 5045823 5045876 chr3R 5052945 5052998 HMS-Beagle 18 7122 6.5 6.5 6.5 2.4 7175 chr3R 5045823 3` UTR CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052998 intergenic CR45588 - chr3R_18_5045001 chr3R_5045001 RAL-42 1261 chr3R 5067963 5068010 chr3R 5073497 5073547 mdg3 11 5537 3.0 3.5 3.2 2.6 5584 chr3R 5067963 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073547 intergenic not near genes chr3R_11_5070001 chr3R_5070001 RAL-42 1262 chr3R 5338384 5338427 chr3R 5343577 5343589 Rt1c 14 5194 6.0 5.5 5.8 2.1 5205 chr3R 5338384 intron mtd - chr3R 5340986 intron mtd - chr3R 5343589 intron mtd - chr3R_14_5340001 chr3R_5340001 RAL-42 1263 chr3R 5445943 5445990 chr3R 5452423 5452470 Burdock 18 6480 5.5 4.0 4.8 3.1 6527 chr3R 5445943 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452470 intron CG14669 + chr3R_18_5445001 chr3R_5445001 RAL-42 1264 chr3R 5682109 5682153 chr3R 5682219 5682262 22 108 6.5 4.0 5.2 3.5 153 chr3R 5682109 intron Rab23 - chr3R 5682186 intron Rab23 - chr3R 5682262 intron Rab23 - chr3R_22_5680001 chr3R_5680001 RAL-42 1265 chr3R 5701651 5701672 chr3R 5701754 5701775 6 103 0.0 3.5 1.8 2.1 124 chr3R 5701651 intron plx + chr3R 5701713 intron plx + chr3R 5701775 intron plx + chr3R_6_5700001 chr3R_5700001 RAL-42 1266 chr3R 5726076 5726111 chr3R 5726258 5726273 9 180 3.5 3.0 3.2 2.1 197 chr3R 5726076 intergenic not near genes chr3R 5726174 intergenic not near genes chr3R 5726273 intergenic not near genes chr3R_9_5725001 chr3R_5725001 RAL-42 1267 chr3R 5734631 5734683 chr3R 5734740 5734792 23 108 5.0 4.0 4.5 4.2 161 chr3R 5734631 exon CG1239 + chr3R 5734712 3` UTR CG2100 - chr3R 5734792 exon CG2100 - chr3R_23_5730001 chr3R_5730001 RAL-42 1268 chr3R 5745995 5746043 chr3R 5746255 5746304 pogo 11 259 3.0 5.0 4.0 2.2 309 chr3R 5745995 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746304 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-42 1269 chr3R 5746997 5747046 chr3R 5753208 5753257 diver 24 6209 11.5 7.5 9.5 2.3 6260 chr3R 5746997 intergenic Madm + chr3R 5750127 intergenic not near genes chr3R 5753257 intergenic CG2091 - chr3R_24_5750001 chr3R_5750001 RAL-42 1270 chr3R 5772355 5772408 chr3R 5772533 5772586 21 178 1.5 3.5 2.5 6.0 231 chr3R 5772355 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772586 intron CG2082 - chr3R_21_5770001 chr3R_5770001 RAL-42 1271 chr3R 5809092 5809114 chr3R 5809353 5809360 pogo 5 258 11.0 6.0 8.5 0.5 268 chr3R 5809092 3` UTR CG11000 + chr3R 5809226 3` UTR CG11000 + chr3R 5809360 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-42 1272 chr3R 5809126 5809143 chr3R 5809366 5809404 pogo 8 257 5.0 7.5 6.2 1.1 278 chr3R 5809126 3` UTR CG11000 + chr3R 5809265 3` UTR CG11000 + chr3R 5809404 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-42 1273 chr3R 5822363 5822410 chr3R 5823550 5823586 1360 22 1186 9.0 6.0 7.5 2.6 1223 chr3R 5822363 3` UTR CG2023 - chr3R 5822974 3` UTR CG2023 - chr3R 5823586 3` UTR CG2023 - chr3R_22_5820001 chr3R_5820001 RAL-42 1274 chr3R 5846867 5846902 chr3R 5846963 5846998 18 96 8.0 5.5 6.8 2.3 131 chr3R 5846867 intergenic CG1213 +,CG14676 + chr3R 5846932 intergenic CG14676 +,CG1213 + chr3R 5846998 intergenic CG14676 +,CG1213 + chr3R_18_5845001 chr3R_5845001 RAL-42 1275 chr3R 5885311 5885341 chr3R 5885411 5885445 8 103 4.5 0.5 2.5 2.3 134 chr3R 5885311 intron CG34113 - chr3R 5885378 intron CG34113 - chr3R 5885445 intron CG34113 - chr3R_8_5885001 chr3R_5885001 RAL-42 1276 chr3R 5893156 5893204 chr3R 5893348 5893396 9 192 2.0 7.5 4.8 1.6 240 chr3R 5893156 intron CG34113 - chr3R 5893276 intron CG34113 - chr3R 5893396 intron CG34113 - chr3R_9_5890001 chr3R_5890001 RAL-42 1277 chr3R 5927543 5927584 chr3R 5927803 5927839 pogo 10 259 4.0 3.5 3.8 2.1 296 chr3R 5927543 intron CG34113 - chr3R 5927691 intron CG34113 - chr3R 5927839 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-42 1278 chr3R 6015979 6015991 chr3R 6024442 6024492 Tirant 5 8488 2.0 3.5 2.8 1.3 8513 chr3R 6015979 intergenic not near genes chr3R 6020236 intergenic not near genes chr3R 6024492 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-42 1279 chr3R 6029945 6029983 chr3R 6030166 6030204 4 221 2.0 8.5 5.2 0.6 259 chr3R 6029945 intergenic not near genes chr3R 6030074 intergenic not near genes chr3R 6030204 intergenic not near genes chr3R_4_6030001 chr3R_6030001 RAL-42 1280 chr3R 6048432 6048469 chr3R 6048527 6048572 6 100 6.0 2.5 4.2 1.2 140 chr3R 6048432 intergenic not near genes chr3R 6048502 intergenic not near genes chr3R 6048572 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-42 1281 chr3R 6124210 6124250 chr3R 6124314 6124354 4 104 5.0 1.5 3.2 1.0 144 chr3R 6124210 3` UTR Vha14-2 + chr3R 6124282 3` UTR Vha14-2 + chr3R 6124354 3` UTR Vha14-2 + chr3R_4_6120001 chr3R_6120001 RAL-42 1282 chr3R 6170535 6170548 chr3R 6170649 6170662 8 114 8.0 1.0 4.5 1.5 127 chr3R 6170535 intergenic CG1077 + chr3R 6170598 intergenic CG1077 + chr3R 6170662 intergenic CG1077 + chr3R_8_6170001 chr3R_6170001 RAL-42 1283 chr3R 6175160 6175199 chr3R 6182452 6182491 HMS-Beagle2 9 7291 4.5 1.5 3.0 2.2 7331 chr3R 6175160 intergenic Osi1 + chr3R 6178826 intron CR45194 + chr3R 6182491 intergenic CR45194 + chr3R_9_6175001 chr3R_6175001 RAL-42 1284 chr3R 6185594 6185631 chr3R 6185714 6185751 7 119 4.0 4.0 4.0 1.4 157 chr3R 6185594 intergenic not near genes chr3R 6185672 intergenic not near genes chr3R 6185751 intergenic not near genes chr3R_7_6185001 chr3R_6185001 RAL-42 1285 chr3R 6206280 6206316 chr3R 6206504 6206541 BS 8 229 4.5 4.0 4.2 1.5 261 chr3R 6206280 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206541 intron Osi24 + chr3R_8_6205001 chr3R_6205001 RAL-42 1286 chr3R 6222286 6222339 chr3R 6222387 6222435 22 100 7.0 6.0 6.5 2.9 149 chr3R 6222286 intergenic not near genes chr3R 6222360 intergenic not near genes chr3R 6222435 intergenic not near genes chr3R_22_6220001 chr3R_6220001 RAL-42 1287 chr3R 6428789 6428833 chr3R 6428911 6428946 13 121 4.5 6.0 5.2 2.1 157 chr3R 6428789 intron gpp + chr3R 6428868 intron gpp + chr3R 6428946 intron gpp + chr3R_13_6425001 chr3R_6425001 RAL-42 1288 chr3R 6444799 6444840 chr3R 6444896 6444937 15 97 6.0 5.5 5.8 2.2 138 chr3R 6444799 intron gpp + chr3R 6444868 intron gpp + chr3R 6444937 intron gpp + chr3R_15_6440001 chr3R_6440001 RAL-42 1289 chr3R 6461578 6461613 chr3R 6461678 6461713 22 99 12.0 17.5 14.8 1.4 135 chr3R 6461578 intergenic not near genes chr3R 6461646 intergenic not near genes chr3R 6461713 intergenic not near genes chr3R_22_6460001 chr3R_6460001 RAL-42 1290 chr3R 6479927 6479970 chr3R 6480023 6480066 6 96 8.5 9.5 9.0 0.6 139 chr3R 6479927 intron CG15186 + chr3R 6479996 intron CG15186 + chr3R 6480066 intron CG15186 + chr3R_6_6475001 chr3R_6475001 RAL-42 1291 chr3R 6510009 6510034 chr3R 6515110 6515135 jockey 5 5101 6.5 4.0 5.2 0.8 5126 chr3R 6510009 intergenic not near genes chr3R 6512572 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-42 1292 chr3R 6523299 6523347 chr3R 6523695 6523743 12 395 6.5 5.5 6.0 1.7 444 chr3R 6523299 intergenic not near genes chr3R 6523521 intergenic not near genes chr3R 6523743 intergenic not near genes chr3R_12_6520001 chr3R_6520001 RAL-42 1293 chr3R 6532090 6532140 chr3R 6532484 6532521 15 392 3.0 5.0 4.0 3.0 431 chr3R 6532090 intron dpr11 - chr3R 6532306 intron dpr11 - chr3R 6532521 intron dpr11 - chr3R_15_6530001 chr3R_6530001 RAL-42 1294 chr3R 6561933 6561977 chr3R 6562037 6562081 11 102 8.0 8.0 8.0 1.2 148 chr3R 6561933 intron dpr11 - chr3R 6562007 intron dpr11 - chr3R 6562081 intron dpr11 - chr3R_11_6560001 chr3R_6560001 RAL-42 1295 chr3R 6639907 6639917 chr3R 6639989 6640015 4 94 4.0 0.0 2.0 1.3 108 chr3R 6639907 intergenic not near genes chr3R 6639961 intergenic not near genes chr3R 6640015 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-42 1296 chr3R 6689337 6689367 chr3R 6689439 6689469 6 98 5.0 8.0 6.5 0.8 132 chr3R 6689337 intergenic Ccp84Af - chr3R 6689403 intergenic Ccp84Af - chr3R 6689469 intergenic Ccp84Af - chr3R_6_6685001 chr3R_6685001 RAL-42 1297 chr3R 6693632 6693672 chr3R 6693739 6693768 12 106 5.5 8.5 7.0 1.5 136 chr3R 6693632 intergenic Ccp84Ad + chr3R 6693700 intergenic Ccp84Ad + chr3R 6693768 intergenic Ccp84Ad + chr3R_12_6690001 chr3R_6690001 RAL-42 1298 chr3R 6693965 6694008 chr3R 6694079 6694122 17 113 6.5 7.5 7.0 2.1 157 chr3R 6693965 intergenic Ccp84Ad + chr3R 6694044 intergenic not near genes chr3R 6694122 intergenic not near genes chr3R_17_6690001 chr3R_6690001 RAL-42 1299 chr3R 6705670 6705714 chr3R 6705914 6705958 9 244 0.0 5.0 2.5 2.6 288 chr3R 6705670 intergenic not near genes chr3R 6705814 intergenic not near genes chr3R 6705958 intergenic not near genes chr3R_9_6705001 chr3R_6705001 RAL-42 1300 chr3R 6737494 6737527 chr3R 6739299 6739330 Doc 6 1801 3.0 9.0 6.0 0.9 1836 chr3R 6737494 intron pb - chr3R 6738412 intron pb - chr3R 6739330 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-42 1301 chr3R 6862201 6862251 chr3R 6862308 6862358 13 107 2.0 1.0 1.5 5.2 157 chr3R 6862201 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862358 intergenic not near genes chr3R_13_6860001 chr3R_6860001 RAL-42 1302 chr3R 6866352 6866399 chr3R 6866681 6866728 18 329 4.5 1.5 3.0 4.5 376 chr3R 6866352 intergenic ftz + chr3R 6866540 intergenic ftz + chr3R 6866728 intergenic ftz + chr3R_18_6865001 chr3R_6865001 RAL-42 1303 chr3R 6918042 6918094 chr3R 6918140 6918192 9 98 3.5 3.0 3.2 2.1 150 chr3R 6918042 intron Antp - chr3R 6918117 intron Antp - chr3R 6918192 intron Antp - chr3R_9_6915001 chr3R_6915001 RAL-42 1304 chr3R 7017573 7017597 chr3R 7017681 7017704 8 108 4.5 3.5 4.0 1.6 131 chr3R 7017573 intergenic not near genes chr3R 7017638 intergenic not near genes chr3R 7017704 intergenic not near genes chr3R_8_7015001 chr3R_7015001 RAL-42 1305 chr3R 7026847 7026877 chr3R 7026945 7026962 7 96 3.0 4.0 3.5 1.6 115 chr3R 7026847 intergenic not near genes chr3R 7026904 intergenic not near genes chr3R 7026962 intergenic not near genes chr3R_7_7025001 chr3R_7025001 RAL-42 1306 chr3R 7103284 7103311 chr3R 7103363 7103407 9 90 3.5 2.0 2.8 2.4 123 chr3R 7103284 intron Alh - chr3R 7103346 intron Alh - chr3R 7103407 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-42 1307 chr3R 7173661 7173706 chr3R 7173761 7173806 12 100 7.0 10.0 8.5 1.3 145 chr3R 7173661 intron sas + chr3R 7173734 intron sas + chr3R 7173806 intron sas + chr3R_12_7170001 chr3R_7170001 RAL-42 1308 chr3R 7210608 7210616 chr3R 7210709 7210722 4 105 0.0 8.0 4.0 0.8 114 chr3R 7210608 intergenic not near genes chr3R 7210665 intergenic not near genes chr3R 7210722 intergenic not near genes chr3R_4_7210001 chr3R_7210001 RAL-42 1309 chr3R 7251811 7251859 chr3R 7251908 7251956 12 93 1.5 2.0 1.8 4.3 145 chr3R 7251811 exon Obp84a - chr3R 7251884 exon Obp84a - chr3R 7251956 exon Obp84a - chr3R_12_7250001 chr3R_7250001 RAL-42 1310 chr3R 7252389 7252428 chr3R 7252496 7252535 15 106 7.5 6.0 6.8 1.9 146 chr3R 7252389 3` UTR Gld - chr3R 7252462 3` UTR Gld - chr3R 7252535 3` UTR Gld - chr3R_15_7250001 chr3R_7250001 RAL-42 1311 chr3R 7447971 7448006 chr3R 7448069 7448104 17 98 8.0 5.5 6.8 2.2 133 chr3R 7447971 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448104 intergenic not near genes chr3R_17_7445001 chr3R_7445001 RAL-42 1312 chr3R 7542451 7542460 chr3R 7542549 7542558 5 98 7.5 0.0 3.8 1.0 107 chr3R 7542451 intron alpha-Est2 + chr3R 7542504 intron alpha-Est2 + chr3R 7542558 intron alpha-Est2 + chr3R_5_7540001 chr3R_7540001 RAL-42 1313 chr3R 7545678 7545731 chr3R 7545921 7545974 21 243 3.0 1.5 2.2 6.6 296 chr3R 7545678 intergenic alpha-Est1 -,alpha-Est2 + chr3R 7545826 3` UTR alpha-Est1 - chr3R 7545974 exon alpha-Est1 - chr3R_21_7545001 chr3R_7545001 RAL-42 1314 chr3R 7729446 7729495 chr3R 7737404 7737453 Stalker2 12 7957 5.5 6.5 6.0 1.7 8007 chr3R 7729446 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737453 intergenic not near genes chr3R_12_7730001 chr3R_7730001 RAL-42 1315 chr3R 7745585 7745630 chr3R 7745683 7745727 13 98 5.0 5.5 5.2 2.1 142 chr3R 7745585 intergenic not near genes chr3R 7745656 intergenic not near genes chr3R 7745727 intergenic not near genes chr3R_13_7745001 chr3R_7745001 RAL-42 1316 chr3R 7821695 7821739 chr3R 7821811 7821854 17 116 7.0 3.5 5.2 2.7 159 chr3R 7821695 intron CG34384 + chr3R 7821774 intron CG34384 + chr3R 7821854 intron CG34384 + chr3R_17_7820001 chr3R_7820001 RAL-42 1317 chr3R 7849622 7849677 chr3R 7850809 7850843 1360 15 1180 4.0 8.0 6.0 2.1 1221 chr3R 7849622 intron CG34384 + chr3R 7850232 intron CG34384 + chr3R 7850843 intron CG34384 + chr3R_15_7850001 chr3R_7850001 RAL-42 1318 chr3R 7973299 7973336 chr3R 7974381 7974418 1360 11 1082 3.5 11.0 7.2 1.3 1119 chr3R 7973299 intergenic not near genes chr3R 7973858 intergenic not near genes chr3R 7974418 3` UTR CD98hc - chr3R_11_7970001 chr3R_7970001 RAL-42 1319 chr3R 8101756 8101790 chr3R 8104860 8104894 G2 7 3104 2.0 9.0 5.5 1.1 3138 chr3R 8101756 exon CG7900 + chr3R 8103325 intron CG7900 + chr3R 8104894 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-42 1320 chr3R 8336516 8336530 chr3R 8336626 8336643 4 110 4.5 2.5 3.5 0.9 127 chr3R 8336516 intergenic not near genes chr3R 8336580 intergenic not near genes chr3R 8336643 intergenic not near genes chr3R_4_8335001 chr3R_8335001 RAL-42 1321 chr3R 8339246 8339247 chr3R 21907534 21907536 10 13568288 16.0 10.5 13.2 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-42 1322 chr3R 8403006 8403036 chr3R 8412187 8412202 roo 5 9176 1.5 5.0 3.2 1.2 9196 chr3R 8403006 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412202 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-42 1323 chr3R 8552358 8552402 chr3R 8552451 8552478 5 77 2.0 3.5 2.8 1.3 120 chr3R 8552358 intergenic Or85d + chr3R 8552418 intergenic Or85d + chr3R 8552478 intergenic Or85d + chr3R_5_8550001 chr3R_8550001 RAL-42 1324 chr3R 8599504 8599510 chr3R 8600161 8600176 4 660 5.5 0.0 2.8 1.1 672 chr3R 8599504 intron 5-HT2B + chr3R 8599840 intron 5-HT2B + chr3R 8600176 intron 5-HT2B + chr3R_4_8595001 chr3R_8595001 RAL-42 1325 chr3R 8694915 8694961 chr3R 8695084 8695130 12 167 3.0 4.0 3.5 2.7 215 chr3R 8694915 intron hb - chr3R 8695022 intron hb - chr3R 8695130 intron hb - chr3R_12_8695001 chr3R_8695001 RAL-42 1326 chr3R 8707340 8707381 chr3R 8709800 8709842 jockey 5 2461 2.0 1.5 1.8 1.8 2502 chr3R 8707340 intergenic not near genes chr3R 8708591 intergenic not near genes chr3R 8709842 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-42 1327 chr3R 8743174 8743179 chr3R 8743276 8743281 4 102 4.0 1.0 2.5 1.1 107 chr3R 8743174 intron CG9801 - chr3R 8743228 intron CG9801 - chr3R 8743281 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-42 1328 chr3R 8743181 8743218 chr3R 8743270 8743315 6 93 2.5 0.5 1.5 2.4 134 chr3R 8743181 intron CG9801 - chr3R 8743248 intron CG9801 - chr3R 8743315 intron CG9801 - chr3R_6_8740001 chr3R_8740001 RAL-42 1329 chr3R 8793404 8793445 chr3R 8793500 8793533 13 95 8.0 2.0 5.0 2.2 129 chr3R 8793404 intron,intron Pif1A -,Pif1B - chr3R 8793468 intron,intron Pif1A -,Pif1B - chr3R 8793533 intron,intron Pif1A -,Pif1B - chr3R_13_8790001 chr3R_8790001 RAL-42 1330 chr3R 8917871 8917899 chr3R 8917971 8917999 11 100 5.0 2.0 3.5 2.4 128 chr3R 8917871 intron pyd - chr3R 8917935 intron pyd - chr3R 8917999 intron pyd - chr3R_11_8915001 chr3R_8915001 RAL-42 1331 chr3R 8997367 8997396 chr3R 8997465 8997506 11 107 3.5 5.0 4.2 2.1 139 chr3R 8997367 intron CG31100 - chr3R 8997436 intron CG31100 - chr3R 8997506 intron CG31100 - chr3R_11_8995001 chr3R_8995001 RAL-42 1332 chr3R 9036367 9036400 chr3R 9036465 9036498 7 98 4.0 4.5 4.2 1.3 131 chr3R 9036367 intron neur - chr3R 9036432 intron neur - chr3R 9036498 intron neur - chr3R_7_9035001 chr3R_9035001 RAL-42 1333 chr3R 9083138 9083174 chr3R 9083233 9083279 4 99 2.0 1.0 1.5 1.6 141 chr3R 9083138 intron pum - chr3R 9083208 intron pum - chr3R 9083279 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-42 1334 chr3R 9099444 9099480 chr3R 9099547 9099583 7 103 0.5 5.5 3.0 1.8 139 chr3R 9099444 intron pum - chr3R 9099514 intron pum - chr3R 9099583 intron pum - chr3R_7_9095001 chr3R_9095001 RAL-42 1335 chr3R 9101832 9101860 chr3R 9101950 9101977 8 118 4.5 3.5 4.0 1.6 145 chr3R 9101832 intron pum - chr3R 9101904 intron pum - chr3R 9101977 intron pum - chr3R_8_9100001 chr3R_9100001 RAL-42 1336 chr3R 9108851 9108877 chr3R 9108947 9108973 6 95 2.0 2.5 2.2 1.9 122 chr3R 9108851 intron pum - chr3R 9108912 intron pum - chr3R 9108973 intron pum - chr3R_6_9105001 chr3R_9105001 RAL-42 1337 chr3R 9149425 9149448 chr3R 9149525 9149547 7 100 5.5 1.0 3.2 1.7 122 chr3R 9149425 intron pum - chr3R 9149486 intron pum - chr3R 9149547 intron pum - chr3R_7_9145001 chr3R_9145001 RAL-42 1338 chr3R 9251417 9251455 chr3R 9251517 9251555 11 98 7.5 7.0 7.2 1.3 138 chr3R 9251417 3` UTR CG8420 + chr3R 9251486 intergenic CG8420 +,St2 + chr3R 9251555 intergenic CG8420 +,St2 + chr3R_11_9250001 chr3R_9250001 RAL-42 1339 chr3R 9319561 9319599 chr3R 9320016 9320054 jockey 5 455 4.0 5.5 4.8 0.9 493 chr3R 9319561 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320054 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-42 1340 chr3R 9361827 9361844 chr3R 9362088 9362105 pogo 9 261 4.0 10.5 7.2 1.1 278 chr3R 9361827 3` UTR CG45050 + chr3R 9361966 3` UTR CG45050 + chr3R 9362105 3` UTR CG45050 + chr3R_9_9360001 chr3R_9360001 RAL-42 1341 chr3R 9379123 9379174 chr3R 9379225 9379268 5 100 0.0 0.5 0.2 4.2 145 chr3R 9379123 intron FER - chr3R 9379196 intron FER - chr3R 9379268 intron FER - chr3R_5_9375001 chr3R_9375001 RAL-42 1342 chr3R 9382809 9382835 chr3R 9382947 9382980 5 143 1.5 1.0 1.2 2.3 171 chr3R 9382809 intron FER - chr3R 9382894 intron FER - chr3R 9382980 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-42 1343 chr3R 9389945 9389991 chr3R 9390081 9390123 6 134 0.5 3.0 1.8 2.1 178 chr3R 9389945 intron FER - chr3R 9390034 intron FER - chr3R 9390123 intron FER - chr3R_6_9390001 chr3R_9390001 RAL-42 1344 chr3R 9611860 9611878 chr3R 9611962 9611980 6 102 6.5 0.5 3.5 1.3 120 chr3R 9611860 intron CG8312 + chr3R 9611920 intron CG8312 + chr3R 9611980 intron CG8312 + chr3R_6_9610001 chr3R_9610001 RAL-42 1345 chr3R 9702243 9702258 chr3R 9702339 9702355 7 95 9.0 5.5 7.2 0.9 112 chr3R 9702243 intron Unc-115a - chr3R 9702299 intron Unc-115a - chr3R 9702355 intron Unc-115a - chr3R_7_9700001 chr3R_9700001 RAL-42 1346 chr3R 9702261 9702280 chr3R 9702335 9702366 4 85 6.0 4.0 5.0 0.7 105 chr3R 9702261 intron Unc-115a - chr3R 9702314 intron Unc-115a - chr3R 9702366 intron Unc-115a - chr3R_4_9700001 chr3R_9700001 RAL-42 1347 chr3R 9739892 9739940 chr3R 9741858 9741891 9 1962 6.0 18.0 12.0 0.7 1999 chr3R 9739892 5` UTR CG12950 - chr3R 9740892 intergenic Pnn + chr3R 9741891 exon Pnn + chr3R_9_9740001 chr3R_9740001 RAL-42 1348 chr3R 9739234 9739271 chr3R 9742281 9742318 12 3047 27.5 42.0 34.8 0.3 3084 chr3R 9739234 intron CG12950 - chr3R 9740776 intergenic Pnn + chr3R 9742318 3` UTR Pnn + chr3R_12_9740001 chr3R_9740001 RAL-42 1349 chr3R 9765918 9765939 chr3R 9765998 9766022 6 86 3.0 11.0 7.0 0.8 104 chr3R 9765918 3` UTR CG8478 + chr3R 9765970 3` UTR CG8478 + chr3R 9766022 3` UTR CG8478 + chr3R_6_9765001 chr3R_9765001 RAL-42 1350 chr3R 9829399 9829422 chr3R 9829504 9829527 8 104 2.0 3.5 2.8 2.1 128 chr3R 9829399 intron Teh1 - chr3R 9829463 intron Teh1 - chr3R 9829527 intron Teh1 - chr3R_8_9825001 chr3R_9825001 RAL-42 1351 chr3R 9836885 9836930 chr3R 9836996 9837042 8 105 4.5 4.0 4.2 1.5 157 chr3R 9836885 intron Teh1 - chr3R 9836964 intron Teh1 - chr3R 9837042 intron Teh1 - chr3R_8_9835001 chr3R_9835001 RAL-42 1352 chr3R 9864347 9864369 chr3R 9864474 9864513 8 138 4.0 5.0 4.5 1.5 166 chr3R 9864347 intron Teh1 - chr3R 9864430 intron Teh1 - chr3R 9864513 intron Teh1 - chr3R_8_9860001 chr3R_9860001 RAL-42 1353 chr3R 10174107 10174146 chr3R 10174209 10174238 7 98 2.0 1.5 1.8 2.5 131 chr3R 10174107 intron CG12814 - chr3R 10174172 intron CG12814 - chr3R 10174238 intron CG12814 - chr3R_7_10170001 chr3R_10170001 RAL-42 1354 chr3R 10231779 10231813 chr3R 10237376 10237410 mdg3 10 5597 4.5 3.0 3.8 2.1 5631 chr3R 10231779 intron CG42795 + chr3R 10234594 intron CG42795 + chr3R 10237410 intron CG42795 + chr3R_10_10230001 chr3R_10230001 RAL-42 1355 chr3R 10255367 10255374 chr3R 10260827 10260834 I-element 4 5460 10.5 3.5 7.0 0.5 5467 chr3R 10255367 3` UTR Sirt6 - chr3R 10258100 intron Sirt6 - chr3R 10260834 exon Sirt6 - chr3R_4_10255001 chr3R_10255001 RAL-42 1356 chr3R 10275558 10275572 chr3R 10275655 10275669 5 97 6.5 5.0 5.8 0.7 111 chr3R 10275558 intron CG43143 + chr3R 10275614 intron CG43143 + chr3R 10275669 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-42 1357 chr3R 10306952 10306958 chr3R 10312191 10312197 5 5239 16.0 44.5 30.2 0.2 5245 chr3R 10306952 exon CG43143 + chr3R 10309574 exon CG6293 - chr3R 10312197 3` UTR Bruce - chr3R_5_10305001 chr3R_10305001 RAL-42 1358 chr3R 10306951 10307007 chr3R 10312198 10312246 11 5240 31.5 41.0 36.2 0.3 5295 chr3R 10306951 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312246 3` UTR Bruce - chr3R_11_10305001 chr3R_10305001 RAL-42 1359 chr3R 10641587 10641605 chr3R 10641676 10641705 5 97 7.0 1.5 4.2 1.0 118 chr3R 10641587 5` UTR CR44018 + chr3R 10641646 5` UTR CR44018 + chr3R 10641705 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-42 1360 chr3R 10651790 10651837 chr3R 10651909 10651956 13 118 7.0 5.5 6.2 1.8 166 chr3R 10651790 intergenic not near genes chr3R 10651873 intergenic not near genes chr3R 10651956 intergenic not near genes chr3R_13_10650001 chr3R_10650001 RAL-42 1361 chr3R 10724649 10724693 chr3R 10724822 10724866 8 172 1.5 1.0 1.2 3.6 217 chr3R 10724649 intergenic not near genes chr3R 10724758 intergenic not near genes chr3R 10724866 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-42 1362 chr3R 10886852 10886900 chr3R 10886952 10887000 7 100 3.5 5.0 4.2 1.3 148 chr3R 10886852 intron Leash + chr3R 10886926 intron Leash + chr3R 10887000 intron Leash + chr3R_7_10885001 chr3R_10885001 RAL-42 1363 chr3R 10919671 10919716 chr3R 10919769 10919814 14 98 1.0 5.0 3.0 3.5 143 chr3R 10919671 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919814 intergenic not near genes chr3R_14_10915001 chr3R_10915001 RAL-42 1364 chr3R 10920030 10920049 chr3R 10920128 10920147 5 98 7.5 3.0 5.2 0.8 117 chr3R 10920030 intergenic not near genes chr3R 10920088 intergenic not near genes chr3R 10920147 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-42 1365 chr3R 10920054 10920076 chr3R 10920123 10920173 13 93 6.5 3.0 4.8 2.2 119 chr3R 10920054 intergenic not near genes chr3R 10920114 intergenic not near genes chr3R 10920173 intergenic not near genes chr3R_13_10920001 chr3R_10920001 RAL-42 1366 chr3R 11016942 11016986 chr3R 11017045 11017094 12 112 2.5 4.0 3.2 2.9 152 chr3R 11016942 intron CG34114 + chr3R 11017018 intron CG34114 + chr3R 11017094 intron CG34114 + chr3R_12_11015001 chr3R_11015001 RAL-42 1367 chr3R 11054559 11054600 chr3R 11054676 11054717 10 117 0.5 1.0 0.8 5.6 158 chr3R 11054559 intergenic not near genes chr3R 11054638 intergenic not near genes chr3R 11054717 intergenic not near genes chr3R_10_11050001 chr3R_11050001 RAL-42 1368 chr3R 11085458 11085486 chr3R 11085554 11085569 8 95 1.0 3.0 2.0 2.7 111 chr3R 11085458 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085569 intergenic CR44940 - chr3R_8_11085001 chr3R_11085001 RAL-42 1369 chr3R 11379218 11379246 chr3R 11388392 11388421 roo 4 9175 9.5 7.0 8.2 0.4 9203 chr3R 11379218 intron pros + chr3R 11383820 intron pros + chr3R 11388421 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-42 1370 chr3R 11491586 11491633 chr3R 11491682 11491729 16 95 5.5 6.0 5.8 2.4 143 chr3R 11491586 intergenic not near genes chr3R 11491658 intergenic not near genes chr3R 11491729 intergenic not near genes chr3R_16_11490001 chr3R_11490001 RAL-42 1371 chr3R 11695718 11695769 chr3R 11695819 11695870 13 101 3.0 4.0 3.5 2.9 152 chr3R 11695718 intergenic not near genes chr3R 11695794 intergenic not near genes chr3R 11695870 intergenic not near genes chr3R_13_11695001 chr3R_11695001 RAL-42 1372 chr3R 11757727 11757763 chr3R 11757844 11757861 6 116 2.5 1.5 2.0 2.0 134 chr3R 11757727 intron Lk6 - chr3R 11757794 intron Lk6 - chr3R 11757861 intron Lk6 - chr3R_6_11755001 chr3R_11755001 RAL-42 1373 chr3R 11998946 11998961 chr3R 11999081 11999095 5 135 4.5 3.5 4.0 1.0 149 chr3R 11998946 intron Tk - chr3R 11999020 intron Tk - chr3R 11999095 intron Tk - chr3R_5_11995001 chr3R_11995001 RAL-42 1374 chr3R 12022867 12022912 chr3R 12025064 12025108 pogo 8 2196 1.5 1.5 1.5 3.2 2241 chr3R 12022867 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025108 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-42 1375 chr3R 12045158 12045200 chr3R 12045254 12045295 13 95 3.5 2.5 3.0 3.2 137 chr3R 12045158 intergenic not near genes chr3R 12045226 intergenic not near genes chr3R 12045295 intergenic not near genes chr3R_13_12045001 chr3R_12045001 RAL-42 1376 chr3R 12080847 12080882 chr3R 12080944 12080980 8 92 3.0 1.5 2.2 2.5 133 chr3R 12080847 intron CG14741 - chr3R 12080914 intron CG14741 - chr3R 12080980 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-42 1377 chr3R 12247123 12247159 chr3R 12247228 12247264 4 105 1.5 2.5 2.0 1.3 141 chr3R 12247123 intergenic not near genes chr3R 12247194 intergenic not near genes chr3R 12247264 intergenic not near genes chr3R_4_12245001 chr3R_12245001 RAL-42 1378 chr3R 12299791 12299835 chr3R 12299904 12299932 10 111 5.5 4.0 4.8 1.7 141 chr3R 12299791 intron svp + chr3R 12299862 intron svp + chr3R 12299932 intron svp + chr3R_10_12295001 chr3R_12295001 RAL-42 1379 chr3R 12314209 12314256 chr3R 12314338 12314390 15 133 4.0 5.0 4.5 2.7 181 chr3R 12314209 intergenic not near genes chr3R 12314300 intergenic not near genes chr3R 12314390 intergenic not near genes chr3R_15_12310001 chr3R_12310001 RAL-42 1380 chr3R 12328141 12328183 chr3R 12328272 12328316 11 131 7.0 3.0 5.0 1.8 175 chr3R 12328141 intergenic CR45584 + chr3R 12328228 intergenic CR45584 + chr3R 12328316 intergenic CR45584 + chr3R_11_12325001 chr3R_12325001 RAL-42 1381 chr3R 12344109 12344152 chr3R 12344206 12344249 7 97 3.5 3.5 3.5 1.6 140 chr3R 12344109 intergenic not near genes chr3R 12344179 intergenic not near genes chr3R 12344249 intergenic not near genes chr3R_7_12340001 chr3R_12340001 RAL-42 1382 chr3R 12436437 12436482 chr3R 12436541 12436589 8 96 4.0 2.5 3.2 1.9 152 chr3R 12436437 exon Desat2 + chr3R 12436513 exon Desat2 + chr3R 12436589 exon Desat2 + chr3R_8_12435001 chr3R_12435001 RAL-42 1383 chr3R 12520675 12520722 chr3R 12520783 12520822 10 99 2.0 2.5 2.2 3.1 147 chr3R 12520675 intron Octbeta3R - chr3R 12520748 intron Octbeta3R - chr3R 12520822 intron Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-42 1384 chr3R 12543592 12543624 chr3R 12543702 12543734 11 108 4.5 4.5 4.5 2.0 142 chr3R 12543592 intron Octbeta3R - chr3R 12543663 intron Octbeta3R - chr3R 12543734 intron Octbeta3R - chr3R_11_12540001 chr3R_12540001 RAL-42 1385 chr3R 12602377 12602416 chr3R 12602475 12602514 4 98 6.0 1.5 3.8 0.8 137 chr3R 12602377 intergenic not near genes chr3R 12602446 intergenic not near genes chr3R 12602514 intergenic not near genes chr3R_4_12600001 chr3R_12600001 RAL-42 1386 chr3R 12685396 12685446 chr3R 12685590 12685640 19 192 6.0 5.0 5.5 2.9 244 chr3R 12685396 intron kar - chr3R 12685518 intron kar - chr3R 12685640 intron kar - chr3R_19_12685001 chr3R_12685001 RAL-42 1387 chr3R 12748946 12748984 chr3R 12749059 12749097 9 113 4.0 4.5 4.2 1.7 151 chr3R 12748946 intron beat-Vc - chr3R 12749022 intron beat-Vc - chr3R 12749097 intron beat-Vc - chr3R_9_12745001 chr3R_12745001 RAL-42 1388 chr3R 12763120 12763154 chr3R 12763217 12763251 9 97 0.0 4.5 2.2 2.8 131 chr3R 12763120 intron beat-Vc - chr3R 12763186 intron beat-Vc - chr3R 12763251 intron beat-Vc - chr3R_9_12760001 chr3R_12760001 RAL-42 1389 chr3R 12787928 12787950 chr3R 12788031 12788053 4 103 1.5 2.5 2.0 1.3 125 chr3R 12787928 intergenic not near genes chr3R 12787990 intergenic not near genes chr3R 12788053 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-42 1390 chr3R 12864542 12864595 chr3R 12865047 12865100 roo 11 505 1.5 5.0 3.2 2.6 558 chr3R 12864542 intergenic not near genes chr3R 12864821 intergenic not near genes chr3R 12865100 intergenic not near genes chr3R_11_12860001 chr3R_12860001 RAL-42 1391 chr3R 12935338 12935347 chr3R 12935462 12935471 4 124 3.0 0.0 1.5 1.6 133 chr3R 12935338 intergenic not near genes chr3R 12935404 intergenic not near genes chr3R 12935471 intergenic not near genes chr3R_4_12935001 chr3R_12935001 RAL-42 1392 chr3R 13066984 13067116 chr3R 13067091 13067211 7 99 0.0 0.0 0.0 7.0 227 chr3R 13066984 intron sim + chr3R 13067098 intron sim + chr3R 13067211 intron sim + chr3R_7_13065001 chr3R_13065001 RAL-42 1393 chr3R 13075338 13075370 chr3R 13075439 13075471 16 101 8.0 6.5 7.2 2.0 133 chr3R 13075338 intron sim + chr3R 13075404 intron sim + chr3R 13075471 intron sim + chr3R_16_13075001 chr3R_13075001 RAL-42 1394 chr3R 13135809 13135846 chr3R 13138004 13138041 pogo 5 2195 3.0 1.5 2.2 1.6 2232 chr3R 13135809 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136925 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-42 1395 chr3R 13143034 13143057 chr3R 13148627 13148653 mdg3 4 5595 1.5 3.5 2.5 1.1 5619 chr3R 13143034 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148653 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-42 1396 chr3R 13206640 13206679 chr3R 13206897 13206936 7 253 3.0 1.5 2.2 2.2 296 chr3R 13206640 intergenic not near genes chr3R 13206788 intergenic not near genes chr3R 13206936 intergenic not near genes chr3R_7_13205001 chr3R_13205001 RAL-42 1397 chr3R 13274190 13274244 chr3R 13274289 13274343 4 99 2.0 1.5 1.8 1.4 153 chr3R 13274190 intergenic not near genes chr3R 13274266 intergenic not near genes chr3R 13274343 intergenic not near genes chr3R_4_13270001 chr3R_13270001 RAL-42 1398 chr3R 13314092 13314119 chr3R 13318898 13318927 Doc 7 4808 2.0 2.5 2.2 2.2 4835 chr3R 13314092 intergenic not near genes chr3R 13316510 intergenic not near genes chr3R 13318927 intergenic CG45080 - chr3R_7_13315001 chr3R_13315001 RAL-42 1399 chr3R 13348983 13349033 chr3R 13349079 13349129 13 92 3.5 3.5 3.5 2.9 146 chr3R 13348983 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349129 intergenic not near genes chr3R_13_13345001 chr3R_13345001 RAL-42 1400 chr3R 13368971 13369015 chr3R 13369090 13369134 15 119 3.5 5.0 4.2 2.9 163 chr3R 13368971 3` UTR Dic1 + chr3R 13369052 3` UTR Dic1 + chr3R 13369134 intergenic Dic1 + chr3R_15_13365001 chr3R_13365001 RAL-42 1401 chr3R 13391257 13391293 chr3R 13391364 13391400 4 107 2.0 1.5 1.8 1.4 143 chr3R 13391257 intron CCHa2 - chr3R 13391328 intron CCHa2 - chr3R 13391400 intron CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-42 1402 chr3R 13506834 13506886 chr3R 13506930 13506995 11 98 3.0 0.0 1.5 4.4 161 chr3R 13506834 intergenic not near genes chr3R 13506914 intergenic not near genes chr3R 13506995 intergenic not near genes chr3R_11_13505001 chr3R_13505001 RAL-42 1403 chr3R 13517222 13517242 chr3R 13520058 13520078 jockey 5 2836 3.0 5.5 4.2 1.0 2856 chr3R 13517222 intergenic not near genes chr3R 13518650 intergenic not near genes chr3R 13520078 intergenic not near genes chr3R_5_13515001 chr3R_13515001 RAL-42 1404 chr3R 13558015 13558049 chr3R 13558122 13558155 6 106 8.5 5.5 7.0 0.8 140 chr3R 13558015 intergenic not near genes chr3R 13558085 intergenic not near genes chr3R 13558155 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-42 1405 chr3R 13598067 13598111 chr3R 13598165 13598209 8 95 1.5 3.0 2.2 2.5 142 chr3R 13598067 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598209 intergenic not near genes chr3R_8_13595001 chr3R_13595001 RAL-42 1406 chr3R 13599204 13599241 chr3R 13599335 13599372 7 130 0.0 5.0 2.5 2.0 168 chr3R 13599204 intergenic not near genes chr3R 13599288 intergenic not near genes chr3R 13599372 intergenic not near genes chr3R_7_13595001 chr3R_13595001 RAL-42 1407 chr3R 13603044 13603070 chr3R 13603155 13603178 12 111 5.5 3.5 4.5 2.2 134 chr3R 13603044 intergenic not near genes chr3R 13603111 intergenic not near genes chr3R 13603178 intergenic not near genes chr3R_12_13600001 chr3R_13600001 RAL-42 1408 chr3R 13615187 13615221 chr3R 13615278 13615322 11 100 4.0 5.0 4.5 2.0 135 chr3R 13615187 intergenic not near genes chr3R 13615254 intergenic not near genes chr3R 13615322 intergenic not near genes chr3R_11_13615001 chr3R_13615001 RAL-42 1409 chr3R 13693028 13693028 chr3R 21907534 21907535 7 8214507 18.0 10.5 14.2 0.5 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-42 1410 chr3R 13763260 13763285 chr3R 13763341 13763387 6 98 0.5 2.0 1.2 2.7 127 chr3R 13763260 3` UTR CG34383 + chr3R 13763324 3` UTR CG34383 + chr3R 13763387 3` UTR CG34383 + chr3R_6_13760001 chr3R_13760001 RAL-42 1411 chr3R 13863664 13863709 chr3R 13863771 13863817 6 108 2.0 2.0 2.0 2.0 153 chr3R 13863664 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863817 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-42 1412 chr3R 13891213 13891254 chr3R 13891313 13891354 10 100 2.5 2.5 2.5 2.9 141 chr3R 13891213 intergenic not near genes chr3R 13891284 intergenic not near genes chr3R 13891354 intergenic not near genes chr3R_10_13890001 chr3R_13890001 RAL-42 1413 chr3R 13918225 13918236 chr3R 13918335 13918346 5 110 0.0 4.5 2.2 1.6 121 chr3R 13918225 intergenic not near genes chr3R 13918286 intergenic not near genes chr3R 13918346 intergenic not near genes chr3R_5_13915001 chr3R_13915001 RAL-42 1414 chr3R 13975359 13975409 chr3R 13975454 13975506 22 97 5.0 6.0 5.5 3.4 147 chr3R 13975359 intron rdx - chr3R 13975432 intron rdx - chr3R 13975506 intron rdx - chr3R_22_13975001 chr3R_13975001 RAL-42 1415 chr3R 14021647 14021670 chr3R 14023484 14023498 S-element 5 1835 2.0 1.5 1.8 1.8 1851 chr3R 14021647 intron rdx - chr3R 14022572 intron rdx - chr3R 14023498 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-42 1416 chr3R 14058398 14058418 chr3R 14058863 14058883 5 465 3.5 2.0 2.8 1.3 485 chr3R 14058398 intron foxo + chr3R 14058640 intron foxo + chr3R 14058883 intron foxo + chr3R_5_14055001 chr3R_14055001 RAL-42 1417 chr3R 14067135 14067153 chr3R 14067234 14067252 6 97 3.5 1.5 2.5 1.7 117 chr3R 14067135 exon foxo + chr3R 14067194 intron foxo + chr3R 14067252 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-42 1418 chr3R 14109064 14109112 chr3R 14109165 14109213 14 99 3.0 3.0 3.0 3.5 149 chr3R 14109064 intergenic CR44237 -,Or88a + chr3R 14109138 intergenic CR44237 -,Or88a + chr3R 14109213 intergenic CR44237 -,Or88a + chr3R_14_14105001 chr3R_14105001 RAL-42 1419 chr3R 14117427 14117469 chr3R 14117523 14117565 13 96 5.5 6.0 5.8 1.9 138 chr3R 14117427 intron Kif19A - chr3R 14117496 intron Kif19A - chr3R 14117565 intron Kif19A - chr3R_13_14115001 chr3R_14115001 RAL-42 1420 chr3R 14180792 14180813 chr3R 14185577 14185598 F-element 11 4783 10.0 0.0 5.0 1.8 4806 chr3R 14180792 intron Dop1R1 - chr3R 14183195 intron Dop1R1 - chr3R 14185598 intron Dop1R1 - chr3R_11_14180001 chr3R_14180001 RAL-42 1421 chr3R 14246396 14246414 chr3R 14247912 14247929 jockey 4 1516 2.0 8.0 5.0 0.7 1533 chr3R 14246396 intergenic not near genes chr3R 14247162 intergenic not near genes chr3R 14247929 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-42 1422 chr3R 14278420 14278448 chr3R 14278522 14278550 5 102 3.0 9.0 6.0 0.7 130 chr3R 14278420 intron trx - chr3R 14278485 intron trx - chr3R 14278550 intron trx - chr3R_5_14275001 chr3R_14275001 RAL-42 1423 chr3R 14364059 14364090 chr3R 14364135 14364164 4 80 3.0 1.0 2.0 1.3 105 chr3R 14364059 intron NK7.1 - chr3R 14364112 intron NK7.1 - chr3R 14364164 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-42 1424 chr3R 14384536 14384566 chr3R 14384662 14384667 4 120 1.5 0.0 0.8 2.2 131 chr3R 14384536 intergenic not near genes chr3R 14384602 intergenic not near genes chr3R 14384667 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-42 1425 chr3R 14469777 14469825 chr3R 14469873 14469921 15 95 3.5 5.0 4.2 2.9 144 chr3R 14469777 intron cv-c - chr3R 14469849 intron cv-c - chr3R 14469921 intron cv-c - chr3R_15_14465001 chr3R_14465001 RAL-42 1426 chr3R 14520420 14520470 chr3R 14520539 14520553 7 110 3.5 2.0 2.8 1.8 133 chr3R 14520420 intron Pde6 - chr3R 14520486 intron Pde6 - chr3R 14520553 intron Pde6 - chr3R_7_14520001 chr3R_14520001 RAL-42 1427 chr3R 14527359 14527403 chr3R 14527469 14527520 8 112 3.0 0.0 1.5 3.2 161 chr3R 14527359 intron Pde6 - chr3R 14527440 intron Pde6 - chr3R 14527520 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-42 1428 chr3R 14543611 14543629 chr3R 14543710 14543729 9 100 3.5 9.5 6.5 1.2 118 chr3R 14543611 intron Pde6 - chr3R 14543670 intron Pde6 - chr3R 14543729 intron Pde6 - chr3R_9_14540001 chr3R_14540001 RAL-42 1429 chr3R 14546052 14546073 chr3R 14546149 14546170 8 97 2.0 1.5 1.8 2.9 118 chr3R 14546052 intron Pde6 - chr3R 14546111 intron Pde6 - chr3R 14546170 intron Pde6 - chr3R_8_14545001 chr3R_14545001 RAL-42 1430 chr3R 14608455 14608477 chr3R 14608567 14608589 5 112 1.5 6.5 4.0 1.0 134 chr3R 14608455 intergenic stumps + chr3R 14608522 intergenic stumps + chr3R 14608589 intergenic not near genes chr3R_5_14605001 chr3R_14605001 RAL-42 1431 chr3R 14653136 14653162 chr3R 14653298 14653325 7 163 4.5 2.0 3.2 1.7 189 chr3R 14653136 intron l(3)L1231 - chr3R 14653230 intron l(3)L1231 - chr3R 14653325 intron l(3)L1231 - chr3R_7_14650001 chr3R_14650001 RAL-42 1432 chr3R 14662295 14662317 chr3R 14662396 14662418 6 99 6.0 4.0 5.0 1.0 123 chr3R 14662295 exon Rad17 - chr3R 14662356 intron Rad17 - chr3R 14662418 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-42 1433 chr3R 14704380 14704416 chr3R 14704477 14704513 4 90 4.0 3.0 3.5 0.9 133 chr3R 14704380 intron kibra - chr3R 14704446 intron kibra - chr3R 14704513 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-42 1434 chr3R 14869210 14869254 chr3R 14869333 14869376 9 118 3.5 5.0 4.2 1.7 166 chr3R 14869210 intron btsz - chr3R 14869293 intron btsz - chr3R 14869376 intron btsz - chr3R_9_14865001 chr3R_14865001 RAL-42 1435 chr3R 14898454 14898503 chr3R 14898594 14898643 27 140 5.5 7.5 6.5 3.6 189 chr3R 14898454 intergenic Nup93-2 -,CG3817 + chr3R 14898548 intergenic Nup93-2 -,CG3817 + chr3R 14898643 intergenic CG3817 +,Nup93-2 - chr3R_27_14895001 chr3R_14895001 RAL-42 1436 chr3R 14995040 14995070 chr3R 14995475 14995514 6 439 3.0 4.5 3.8 1.2 474 chr3R 14995040 intergenic not near genes chr3R 14995277 intergenic not near genes chr3R 14995514 intergenic not near genes chr3R_6_14995001 chr3R_14995001 RAL-42 1437 chr3R 15036265 15036308 chr3R 15036445 15036487 7 179 2.0 5.0 3.5 1.6 222 chr3R 15036265 intergenic not near genes chr3R 15036376 intergenic not near genes chr3R 15036487 intergenic not near genes chr3R_7_15035001 chr3R_15035001 RAL-42 1438 chr3R 15041412 15041430 chr3R 15045200 15045218 Doc 5 3788 0.0 3.0 1.5 2.0 3806 chr3R 15041412 intergenic not near genes chr3R 15043315 intergenic not near genes chr3R 15045218 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-42 1439 chr3R 15079787 15079818 chr3R 15080047 15080079 pogo 7 260 5.5 3.0 4.2 1.3 292 chr3R 15079787 3` UTR CG6966 - chr3R 15079933 3` UTR CG6966 - chr3R 15080079 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-42 1440 chr3R 15102494 15102530 chr3R 15109772 15109804 412 11 7277 4.0 4.5 4.2 2.1 7310 chr3R 15102494 intron CG42788 - chr3R 15106149 intron CG42788 - chr3R 15109804 intron CG42788 - chr3R_11_15105001 chr3R_15105001 RAL-42 1441 chr3R 15114897 15114919 chr3R 15114993 15115015 4 96 2.5 2.0 2.2 1.2 118 chr3R 15114897 intron CG42788 - chr3R 15114956 intron CG42788 - chr3R 15115015 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-42 1442 chr3R 15127762 15127811 chr3R 15127862 15127911 18 100 2.5 4.0 3.2 4.3 149 chr3R 15127762 intron CG42788 - chr3R 15127836 intron CG42788 - chr3R 15127911 intron CG42788 - chr3R_18_15125001 chr3R_15125001 RAL-42 1443 chr3R 15160546 15160588 chr3R 15160664 15160706 6 118 1.0 0.0 0.5 4.0 160 chr3R 15160546 intron Gyc88E + chr3R 15160626 intron Gyc88E + chr3R 15160706 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-42 1444 chr3R 15190630 15190675 chr3R 15190775 15190820 17 145 7.0 5.5 6.2 2.4 190 chr3R 15190630 3` UTR Gyc88E + chr3R 15190725 3` UTR Gyc88E + chr3R 15190820 3` UTR Gyc88E + chr3R_17_15190001 chr3R_15190001 RAL-42 1445 chr3R 15320378 15320423 chr3R 15320641 15320686 19 262 3.0 6.0 4.5 3.5 308 chr3R 15320378 5` UTR CG44040 + chr3R 15320532 exon CG44040 + chr3R 15320686 3` UTR CG44040 + chr3R_19_15320001 chr3R_15320001 RAL-42 1446 chr3R 15566406 15566443 chr3R 15566509 15566545 8 101 3.0 6.5 4.8 1.4 139 chr3R 15566406 intergenic not near genes chr3R 15566476 intergenic not near genes chr3R 15566545 intergenic not near genes chr3R_8_15565001 chr3R_15565001 RAL-42 1447 chr3R 15594656 15594670 chr3R 15594759 15594773 8 103 0.0 8.5 4.2 1.5 117 chr3R 15594656 intergenic not near genes chr3R 15594714 intergenic not near genes chr3R 15594773 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-42 1448 chr3R 15635194 15635238 chr3R 15635335 15635370 6 138 0.0 2.0 1.0 3.0 176 chr3R 15635194 intergenic CG43335 + chr3R 15635282 intergenic CG43335 + chr3R 15635370 intergenic CG43335 + chr3R_6_15635001 chr3R_15635001 RAL-42 1449 chr3R 15778715 15778748 chr3R 15778839 15778877 5 125 4.0 3.0 3.5 1.1 162 chr3R 15778715 intergenic not near genes chr3R 15778796 intergenic not near genes chr3R 15778877 intergenic not near genes chr3R_5_15775001 chr3R_15775001 RAL-42 1450 chr3R 15937421 15937435 chr3R 15937523 15937542 4 101 12.5 4.0 8.2 0.4 121 chr3R 15937421 intron Sap47 + chr3R 15937482 intron Sap47 + chr3R 15937542 intron Sap47 + chr3R_4_15935001 chr3R_15935001 RAL-42 1451 chr3R 15952875 15952927 chr3R 15952976 15953028 19 100 8.0 3.0 5.5 2.9 153 chr3R 15952875 intron Sap47 + chr3R 15952952 intron Sap47 + chr3R 15953028 intron Sap47 + chr3R_19_15950001 chr3R_15950001 RAL-42 1452 chr3R 15954384 15954437 chr3R 15954481 15954519 17 92 5.0 3.0 4.0 3.4 135 chr3R 15954384 intron Sap47 + chr3R 15954452 intron Sap47 + chr3R 15954519 intron Sap47 + chr3R_17_15950001 chr3R_15950001 RAL-42 1453 chr3R 16033399 16033438 chr3R 16033500 16033539 13 101 0.5 4.0 2.2 4.1 140 chr3R 16033399 intron pnr + chr3R 16033469 intron pnr + chr3R 16033539 intron pnr + chr3R_13_16030001 chr3R_16030001 RAL-42 1454 chr3R 16225071 16225110 chr3R 16225176 16225215 6 105 5.5 6.0 5.8 0.9 144 chr3R 16225071 intergenic not near genes chr3R 16225143 intergenic not near genes chr3R 16225215 intergenic tara + chr3R_6_16225001 chr3R_16225001 RAL-42 1455 chr3R 16241764 16241815 chr3R 16242047 16242098 13 280 2.0 6.0 4.0 2.6 334 chr3R 16241764 intron tara + chr3R 16241931 intron tara + chr3R 16242098 intron tara + chr3R_13_16240001 chr3R_16240001 RAL-42 1456 chr3R 16374280 16374329 chr3R 16374417 16374466 9 133 2.5 3.0 2.8 2.4 186 chr3R 16374280 intergenic ss - chr3R 16374373 intergenic ss - chr3R 16374466 3` UTR ss - chr3R_9_16370001 chr3R_16370001 RAL-42 1457 chr3R 16675295 16675336 chr3R 16675429 16675470 8 134 5.0 1.5 3.2 1.9 175 chr3R 16675295 intron Ubx - chr3R 16675382 intron Ubx - chr3R 16675470 intron Ubx - chr3R_8_16675001 chr3R_16675001 RAL-42 1458 chr3R 16731930 16731940 chr3R 16732015 16732040 4 96 1.0 4.0 2.5 1.1 110 chr3R 16731930 intron Ubx - chr3R 16731985 intron Ubx - chr3R 16732040 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-42 1459 chr3R 16849724 16849743 chr3R 16849847 16849866 4 122 1.0 7.5 4.2 0.8 142 chr3R 16849724 intron iab-8 - chr3R 16849795 intron iab-8 - chr3R 16849866 intron iab-8 - chr3R_4_16845001 chr3R_16845001 RAL-42 1460 chr3R 17129162 17129176 chr3R 17129264 17129278 10 102 6.0 0.0 3.0 2.5 116 chr3R 17129162 intergenic CG31265 +,CG17475 - chr3R 17129220 intergenic CG31265 +,CG17475 - chr3R 17129278 intergenic CG17475 -,CG31265 + chr3R_10_17125001 chr3R_17125001 RAL-42 1461 chr3R 17209687 17209704 chr3R 17209795 17209812 6 107 6.5 10.5 8.5 0.6 125 chr3R 17209687 intergenic not near genes chr3R 17209750 intergenic not near genes chr3R 17209812 intergenic not near genes chr3R_6_17205001 chr3R_17205001 RAL-42 1462 chr3R 17214002 17214025 chr3R 17214098 17214116 5 94 4.0 3.0 3.5 1.1 114 chr3R 17214002 intergenic not near genes chr3R 17214059 intergenic not near genes chr3R 17214116 intergenic not near genes chr3R_5_17210001 chr3R_17210001 RAL-42 1463 chr3R 17294653 17294690 chr3R 17295101 17295128 BS 9 447 2.0 4.5 3.2 2.1 475 chr3R 17294653 intergenic not near genes chr3R 17294890 intergenic not near genes chr3R 17295128 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-42 1464 chr3R 17346679 17346714 chr3R 17348262 17348297 F-element 11 1583 4.0 6.0 5.0 1.8 1618 chr3R 17346679 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348297 intron beat-IIa - chr3R_11_17345001 chr3R_17345001 RAL-42 1465 chr3R 17393136 17393192 chr3R 17393232 17393288 16 96 8.0 7.5 7.8 1.8 152 chr3R 17393136 intergenic sds22 +,CREG - chr3R 17393212 intergenic CREG -,sds22 + chr3R 17393288 3` UTR CREG - chr3R_16_17390001 chr3R_17390001 RAL-42 1466 chr3R 17497921 17497950 chr3R 17498047 17498076 8 126 2.5 2.5 2.5 2.3 155 chr3R 17497921 intron Dscam3 - chr3R 17497998 intron Dscam3 - chr3R 17498076 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-42 1467 chr3R 17566304 17566354 chr3R 17566478 17566528 14 173 4.0 3.5 3.8 2.9 224 chr3R 17566304 intron Hmx + chr3R 17566416 intron Hmx + chr3R 17566528 intron Hmx + chr3R_14_17565001 chr3R_17565001 RAL-42 1468 chr3R 17591312 17591321 chr3R 17591762 17591764 F-element 4 451 2.5 5.5 4.0 0.8 452 chr3R 17591312 intergenic not near genes chr3R 17591538 intergenic not near genes chr3R 17591764 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-42 1469 chr3R 17634362 17634408 chr3R 17634453 17634504 10 95 0.0 3.0 1.5 4.0 142 chr3R 17634362 intron CG43175 + chr3R 17634433 intron CG43175 + chr3R 17634504 intron CG43175 + chr3R_10_17630001 chr3R_17630001 RAL-42 1470 chr3R 17647223 17647274 chr3R 17647340 17647391 18 117 4.5 5.5 5.0 3.0 168 chr3R 17647223 intergenic CG14322 + chr3R 17647307 intergenic CG14322 + chr3R 17647391 intergenic CG14322 + chr3R_18_17645001 chr3R_17645001 RAL-42 1471 chr3R 17773355 17773390 chr3R 17773470 17773505 6 110 1.5 4.0 2.8 1.6 150 chr3R 17773355 exon CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773505 exon CG43102 - chr3R_6_17770001 chr3R_17770001 RAL-42 1472 chr3R 17823193 17823213 chr3R 17823298 17823318 6 104 4.0 2.0 3.0 1.5 125 chr3R 17823193 intron tinc + chr3R 17823256 intron tinc + chr3R 17823318 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-42 1473 chr3R 17845635 17845676 chr3R 17846100 17846145 7 468 4.5 2.0 3.2 1.7 510 chr3R 17845635 intron tinc + chr3R 17845890 intron tinc + chr3R 17846145 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-42 1474 chr3R 17858034 17858083 chr3R 17858146 17858195 13 110 1.5 5.0 3.2 3.1 161 chr3R 17858034 intron tinc + chr3R 17858114 intron tinc + chr3R 17858195 intron tinc + chr3R_13_17855001 chr3R_17855001 RAL-42 1475 chr3R 17861323 17861371 chr3R 17861419 17861467 12 95 2.5 3.5 3.0 3.0 144 chr3R 17861323 intron tinc + chr3R 17861395 intron tinc + chr3R 17861467 intron tinc + chr3R_12_17860001 chr3R_17860001 RAL-42 1476 chr3R 18098275 18098284 chr3R 18098372 18098378 4 96 1.0 0.0 0.5 2.7 103 chr3R 18098275 intron sr + chr3R 18098326 intron sr + chr3R 18098378 intron sr + chr3R_4_18095001 chr3R_18095001 RAL-42 1477 chr3R 18122876 18122912 chr3R 18122973 18123009 4 97 3.0 5.0 4.0 0.8 133 chr3R 18122876 intron sr + chr3R 18122942 intron sr + chr3R 18123009 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-42 1478 chr3R 18295076 18295108 chr3R 18295207 18295239 4 131 0.0 2.5 1.2 1.8 163 chr3R 18295076 intron l(3)05822 - chr3R 18295158 intron l(3)05822 - chr3R 18295239 intron l(3)05822 - chr3R_4_18295001 chr3R_18295001 RAL-42 1479 chr3R 18312129 18312153 chr3R 18312228 18312252 6 99 4.0 5.5 4.8 1.0 123 chr3R 18312129 intron PKD - chr3R 18312190 intron PKD - chr3R 18312252 intron PKD - chr3R_6_18310001 chr3R_18310001 RAL-42 1480 chr3R 18331762 18331775 chr3R 18333276 18333279 hopper2 5 1512 8.0 1.0 4.5 0.9 1517 chr3R 18331762 3` UTR CG15803 - chr3R 18332520 intron CG15803 - chr3R 18333279 3` UTR CG15803 - chr3R_5_18330001 chr3R_18330001 RAL-42 1481 chr3R 18500718 18500739 chr3R 18500859 18500880 5 141 6.0 4.5 5.2 0.8 162 chr3R 18500718 intron fru - chr3R 18500799 intron fru - chr3R 18500880 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-42 1482 chr3R 18528355 18528384 chr3R 18528462 18528491 9 104 2.5 4.5 3.5 2.0 136 chr3R 18528355 intron fru - chr3R 18528423 intron fru - chr3R 18528491 intron fru - chr3R_9_18525001 chr3R_18525001 RAL-42 1483 chr3R 18549720 18549755 chr3R 18549867 18549902 13 147 7.0 7.0 7.0 1.6 182 chr3R 18549720 intergenic not near genes chr3R 18549811 intergenic not near genes chr3R 18549902 intergenic not near genes chr3R_13_18545001 chr3R_18545001 RAL-42 1484 chr3R 18606493 18606532 chr3R 18610745 18610784 F-element 8 4252 3.0 6.0 4.5 1.5 4291 chr3R 18606493 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_8_18605001 chr3R_18605001 RAL-42 1485 chr3R 18617700 18617745 chr3R 18617800 18617845 22 100 4.0 3.0 3.5 4.9 145 chr3R 18617700 intron,intron qin +,CG14304 - chr3R 18617772 intron,intron qin +,CG14304 - chr3R 18617845 intron,intron qin +,CG14304 - chr3R_22_18615001 chr3R_18615001 RAL-42 1486 chr3R 18697534 18697587 chr3R 18697632 18697685 15 98 2.0 3.5 2.8 3.9 151 chr3R 18697534 intergenic not near genes chr3R 18697610 intergenic not near genes chr3R 18697685 intergenic not near genes chr3R_15_18695001 chr3R_18695001 RAL-42 1487 chr3R 18703015 18703063 chr3R 18703112 18703160 13 97 5.5 4.5 5.0 2.2 145 chr3R 18703015 intergenic not near genes chr3R 18703088 intergenic not near genes chr3R 18703160 intergenic not near genes chr3R_13_18700001 chr3R_18700001 RAL-42 1488 chr3R 18730012 18730036 chr3R 18730103 18730130 4 89 1.0 1.0 1.0 2.0 118 chr3R 18730012 exon Cha + chr3R 18730071 intron Cha + chr3R 18730130 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-42 1489 chr3R 18766759 18766800 chr3R 18766857 18766898 9 98 2.5 2.5 2.5 2.6 139 chr3R 18766759 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766898 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-42 1490 chr3R 18783296 18783333 chr3R 18783885 18783921 4 588 0.0 6.5 3.2 1.0 625 chr3R 18783296 intron CG7720 - chr3R 18783608 intron CG7720 - chr3R 18783921 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-42 1491 chr3R 18817487 18817529 chr3R 18817605 18817647 17 118 0.0 0.0 0.0 17.0 160 chr3R 18817487 intron CG18208 - chr3R 18817567 intron CG18208 - chr3R 18817647 intron CG18208 - chr3R_17_18815001 chr3R_18815001 RAL-42 1492 chr3R 18877990 18878028 chr3R 18878137 18878174 5 147 3.5 5.5 4.5 0.9 184 chr3R 18877990 intergenic not near genes chr3R 18878082 intergenic not near genes chr3R 18878174 intergenic not near genes chr3R_5_18875001 chr3R_18875001 RAL-42 1493 chr3R 18895382 18895579 chr3R 18895479 18895684 15 101 4.5 3.0 3.8 3.1 302 chr3R 18895382 intergenic not near genes chr3R 18895533 intergenic not near genes chr3R 18895684 intergenic not near genes chr3R_15_18895001 chr3R_18895001 RAL-42 1494 chr3R 18955014 18955062 chr3R 18955114 18955162 8 100 4.0 3.0 3.5 1.8 148 chr3R 18955014 intron,intron CG42613 +,CG43732 + chr3R 18955088 intron,intron CG42613 +,CG43732 + chr3R 18955162 intron,intron CG42613 +,CG43732 + chr3R_8_18955001 chr3R_18955001 RAL-42 1495 chr3R 19012998 19013046 chr3R 19013102 19013150 16 103 4.5 3.5 4.0 3.2 152 chr3R 19012998 intron gukh + chr3R 19013074 intron gukh + chr3R 19013150 intron gukh + chr3R_16_19010001 chr3R_19010001 RAL-42 1496 chr3R 19198313 19198358 chr3R 19198455 19198500 15 141 5.0 5.5 5.2 2.4 187 chr3R 19198313 intron CG31475 + chr3R 19198406 intron CG31475 + chr3R 19198500 intron CG31475 + chr3R_15_19195001 chr3R_19195001 RAL-42 1497 chr3R 19248861 19248884 chr3R 19248958 19248983 5 99 5.5 0.0 2.8 1.3 122 chr3R 19248861 intergenic not near genes chr3R 19248922 intergenic not near genes chr3R 19248983 intergenic not near genes chr3R_5_19245001 chr3R_19245001 RAL-42 1498 chr3R 19276910 19276940 chr3R 19277010 19277040 4 100 8.0 5.0 6.5 0.5 130 chr3R 19276910 intergenic not near genes chr3R 19276975 intergenic not near genes chr3R 19277040 intergenic not near genes chr3R_4_19275001 chr3R_19275001 RAL-42 1499 chr3R 19278738 19278779 chr3R 19278834 19278875 11 95 1.5 1.5 1.5 4.4 137 chr3R 19278738 intergenic CR44173 - chr3R 19278806 3` UTR CR44173 - chr3R 19278875 3` UTR CR44173 - chr3R_11_19275001 chr3R_19275001 RAL-42 1500 chr3R 19338542 19338582 chr3R 19338716 19338767 18 182 6.0 3.5 4.8 3.1 225 chr3R 19338542 intergenic not near genes chr3R 19338654 intergenic not near genes chr3R 19338767 intergenic not near genes chr3R_18_19335001 chr3R_19335001 RAL-42 1501 chr3R 19344646 19344697 chr3R 19344801 19344852 17 153 3.5 5.5 4.5 3.1 206 chr3R 19344646 intergenic not near genes chr3R 19344749 intergenic not near genes chr3R 19344852 intergenic not near genes chr3R_17_19340001 chr3R_19340001 RAL-42 1502 chr3R 19475612 19475652 chr3R 19475754 19475766 6 132 3.0 8.0 5.5 0.9 154 chr3R 19475612 intron Dys + chr3R 19475689 intron Dys + chr3R 19475766 intron Dys + chr3R_6_19475001 chr3R_19475001 RAL-42 1503 chr3R 19551052 19551092 chr3R 19551161 19551201 8 109 2.5 3.0 2.8 2.1 149 chr3R 19551052 intron Dys + chr3R 19551126 intron Dys + chr3R 19551201 intron Dys + chr3R_8_19550001 chr3R_19550001 RAL-42 1504 chr3R 19602550 19602598 chr3R 19602650 19602698 10 100 4.5 1.0 2.8 2.6 148 chr3R 19602550 exon CG7333 + chr3R 19602624 3` UTR CG7333 + chr3R 19602698 intergenic CG7333 + chr3R_10_19600001 chr3R_19600001 RAL-42 1505 chr3R 19698661 19698699 chr3R 19698770 19698808 11 109 5.0 3.5 4.2 2.1 147 chr3R 19698661 intergenic Naam + chr3R 19698734 intergenic Naam + chr3R 19698808 intergenic Naam + chr3R_11_19695001 chr3R_19695001 RAL-42 1506 chr3R 19955057 19955103 chr3R 19956031 19956078 6 974 4.0 1.5 2.8 1.6 1021 chr3R 19955057 intron Hs6st - chr3R 19955568 intron Hs6st - chr3R 19956078 intron Hs6st - chr3R_6_19955001 chr3R_19955001 RAL-42 1507 chr3R 19988134 19988176 chr3R 19988802 19988834 7 661 15.0 10.5 12.8 0.5 700 chr3R 19988134 intron Hs6st - chr3R 19988484 intron Hs6st - chr3R 19988834 intron Hs6st - chr3R_7_19985001 chr3R_19985001 RAL-42 1508 chr3R 20008806 20008847 chr3R 20008907 20008948 24 99 8.0 5.5 6.8 3.1 142 chr3R 20008806 intergenic MED25 +,Hs6st - chr3R 20008877 intergenic MED25 +,Hs6st - chr3R 20008948 5` UTR MED25 + chr3R_24_20005001 chr3R_20005001 RAL-42 1509 chr3R 20020131 20020183 chr3R 20020293 20020345 17 161 9.0 4.0 6.5 2.3 214 chr3R 20020131 intron CG4433 - chr3R 20020238 intron CG4433 - chr3R 20020345 intron CG4433 - chr3R_17_20020001 chr3R_20020001 RAL-42 1510 chr3R 20060618 20060656 chr3R 20060721 20060741 6 100 1.0 1.5 1.2 2.7 123 chr3R 20060618 intergenic not near genes chr3R 20060680 intergenic not near genes chr3R 20060741 intergenic not near genes chr3R_6_20060001 chr3R_20060001 RAL-42 1511 chr3R 20077031 20077038 chr3R 20077137 20077144 4 105 4.5 6.5 5.5 0.6 113 chr3R 20077031 intergenic not near genes chr3R 20077088 intergenic not near genes chr3R 20077144 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-42 1512 chr3R 20077040 20077060 chr3R 20077130 20077166 8 101 2.5 5.0 3.8 1.7 126 chr3R 20077040 intergenic not near genes chr3R 20077103 intergenic not near genes chr3R 20077166 intergenic not near genes chr3R_8_20075001 chr3R_20075001 RAL-42 1513 chr3R 20124559 20124592 chr3R 20124666 20124699 9 107 6.5 7.0 6.8 1.2 140 chr3R 20124559 intergenic not near genes chr3R 20124629 intergenic not near genes chr3R 20124699 intergenic not near genes chr3R_9_20120001 chr3R_20120001 RAL-42 1514 chr3R 20156681 20156717 chr3R 20165866 20165905 roo 11 9189 0.5 2.0 1.2 5.0 9224 chr3R 20156681 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165905 intergenic not near genes chr3R_11_20160001 chr3R_20160001 RAL-42 1515 chr3R 20205105 20205152 chr3R 20205292 20205335 5 184 2.5 2.5 2.5 1.4 230 chr3R 20205105 intron Nlg4 + chr3R 20205220 intron Nlg4 + chr3R 20205335 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-42 1516 chr3R 20205544 20205593 chr3R 20205686 20205735 19 142 2.0 7.5 4.8 3.3 191 chr3R 20205544 intron Nlg4 + chr3R 20205640 intron Nlg4 + chr3R 20205735 intron Nlg4 + chr3R_19_20205001 chr3R_20205001 RAL-42 1517 chr3R 20214004 20214051 chr3R 20214322 20214369 22 318 6.0 5.5 5.8 3.2 365 chr3R 20214004 intron Nlg4 + chr3R 20214186 intron Nlg4 + chr3R 20214369 intron Nlg4 + chr3R_22_20210001 chr3R_20210001 RAL-42 1518 chr3R 20222532 20222573 chr3R 20222768 20222809 12 235 6.5 4.0 5.2 1.9 277 chr3R 20222532 intron Nlg4 + chr3R 20222670 intron Nlg4 + chr3R 20222809 intron Nlg4 + chr3R_12_20220001 chr3R_20220001 RAL-42 1519 chr3R 20245260 20245302 chr3R 20248890 20248932 F-element 8 3630 7.5 1.5 4.5 1.5 3672 chr3R 20245260 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248932 intergenic not near genes chr3R_8_20245001 chr3R_20245001 RAL-42 1520 chr3R 20266495 20266543 chr3R 20272986 20273034 Burdock 18 6491 5.0 4.5 4.8 3.1 6539 chr3R 20266495 intron cic + chr3R 20269764 intron cic + chr3R 20273034 intron cic + chr3R_18_20265001 chr3R_20265001 RAL-42 1521 chr3R 20282255 20282310 chr3R 20282351 20282406 6 96 0.0 3.0 1.5 2.4 151 chr3R 20282255 intron cic + chr3R 20282330 intron cic + chr3R 20282406 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-42 1522 chr3R 20330986 20331026 chr3R 20331486 20331532 roo 12 505 3.0 4.5 3.8 2.5 546 chr3R 20330986 intergenic Sirt2 + chr3R 20331259 intergenic Sirt2 + chr3R 20331532 intergenic not near genes chr3R_12_20330001 chr3R_20330001 RAL-42 1523 chr3R 20416515 20416559 chr3R 20416633 20416679 6 119 2.5 4.5 3.5 1.3 164 chr3R 20416515 intron Gfrl - chr3R 20416597 intron Gfrl - chr3R 20416679 intron Gfrl - chr3R_6_20415001 chr3R_20415001 RAL-42 1524 chr3R 20488993 20489045 chr3R 20489089 20489141 14 96 5.0 1.0 3.0 3.5 148 chr3R 20488993 intergenic not near genes chr3R 20489067 intergenic not near genes chr3R 20489141 intergenic not near genes chr3R_14_20485001 chr3R_20485001 RAL-42 1525 chr3R 20506570 20506575 chr3R 20507393 20507398 BS 4 823 1.5 6.5 4.0 0.8 828 chr3R 20506570 intergenic Or92a + chr3R 20506984 intergenic CG4288 - chr3R 20507398 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-42 1526 chr3R 20506577 20506614 chr3R 20507391 20507437 BS 8 821 1.5 6.5 4.0 1.6 860 chr3R 20506577 intergenic Or92a + chr3R 20507007 intergenic CG4288 - chr3R 20507437 3` UTR CG4288 - chr3R_8_20505001 chr3R_20505001 RAL-42 1527 chr3R 20512985 20513034 chr3R 20515708 20515757 opus 19 2723 6.0 6.0 6.0 2.7 2772 chr3R 20512985 intergenic not near genes chr3R 20514371 intergenic not near genes chr3R 20515757 intergenic not near genes chr3R_19_20510001 chr3R_20510001 RAL-42 1528 chr3R 20525847 20525898 chr3R 20526314 20526365 13 465 6.0 3.0 4.5 2.4 518 chr3R 20525847 intergenic not near genes chr3R 20526106 intergenic not near genes chr3R 20526365 intergenic not near genes chr3R_13_20525001 chr3R_20525001 RAL-42 1529 chr3R 20594467 20594513 chr3R 20594577 20594622 6 110 2.5 0.0 1.2 2.7 155 chr3R 20594467 intron bon + chr3R 20594544 intron bon + chr3R 20594622 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-42 1530 chr3R 20596182 20596212 chr3R 20596289 20596319 7 107 5.0 3.5 4.2 1.3 137 chr3R 20596182 intron bon + chr3R 20596250 intron bon + chr3R 20596319 intron bon + chr3R_7_20595001 chr3R_20595001 RAL-42 1531 chr3R 20722839 20722882 chr3R 20722986 20723008 6 132 2.0 2.5 2.2 1.9 169 chr3R 20722839 intergenic not near genes chr3R 20722924 intergenic not near genes chr3R 20723008 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-42 1532 chr3R 20878369 20878403 chr3R 20878475 20878509 9 105 2.5 2.5 2.5 2.6 140 chr3R 20878369 intergenic TotZ +,CR44048 - chr3R 20878439 3` UTR CR44048 - chr3R 20878509 3` UTR CR44048 - chr3R_9_20875001 chr3R_20875001 RAL-42 1533 chr3R 20936068 20936101 chr3R 20936165 20936198 6 97 3.5 4.0 3.8 1.2 130 chr3R 20936068 intron CG31191 - chr3R 20936133 intron CG31191 - chr3R 20936198 intron CG31191 - chr3R_6_20935001 chr3R_20935001 RAL-42 1534 chr3R 20942797 20942832 chr3R 20942891 20942922 10 95 2.0 2.5 2.2 3.1 125 chr3R 20942797 intron CG31191 - chr3R 20942860 intron CG31191 - chr3R 20942922 intron CG31191 - chr3R_10_20940001 chr3R_20940001 RAL-42 1535 chr3R 21007589 21007633 chr3R 21007689 21007698 9 96 3.5 4.5 4.0 1.8 109 chr3R 21007589 intron Calx + chr3R 21007644 intron Calx + chr3R 21007698 intron Calx + chr3R_9_21005001 chr3R_21005001 RAL-42 1536 chr3R 21013996 21014044 chr3R 21014094 21014142 15 98 3.5 5.5 4.5 2.7 146 chr3R 21013996 3` UTR Calx + chr3R 21014069 3` UTR Calx + chr3R 21014142 3` UTR Calx + chr3R_15_21010001 chr3R_21010001 RAL-42 1537 chr3R 21020378 21020431 chr3R 21020474 21020527 24 96 3.5 3.0 3.2 5.7 149 chr3R 21020378 3` UTR Rlip + chr3R 21020452 3` UTR Rlip + chr3R 21020527 3` UTR Rlip + chr3R_24_21020001 chr3R_21020001 RAL-42 1538 chr3R 21108019 21108054 chr3R 21108300 21108335 12 281 5.5 7.0 6.2 1.7 316 chr3R 21108019 intergenic Sec15 -,rtet + chr3R 21108177 intergenic Sec15 -,rtet + chr3R 21108335 intergenic rtet +,Sec15 - chr3R_12_21105001 chr3R_21105001 RAL-42 1539 chr3R 21132611 21132649 chr3R 21132714 21132753 6 103 4.5 0.0 2.2 1.9 142 chr3R 21132611 3` UTR Ice2 + chr3R 21132682 3` UTR Ice2 + chr3R 21132753 exon CG7009 - chr3R_6_21130001 chr3R_21130001 RAL-42 1540 chr3R 21150784 21150835 chr3R 21150939 21150984 11 154 2.0 2.5 2.2 3.4 200 chr3R 21150784 intron SNF4Agamma + chr3R 21150884 intron SNF4Agamma + chr3R 21150984 intron SNF4Agamma + chr3R_11_21150001 chr3R_21150001 RAL-42 1541 chr3R 21154550 21154582 chr3R 21154785 21154817 7 235 5.0 5.0 5.0 1.2 267 chr3R 21154550 intron SNF4Agamma + chr3R 21154684 intron SNF4Agamma + chr3R 21154817 intron SNF4Agamma + chr3R_7_21150001 chr3R_21150001 RAL-42 1542 chr3R 21214727 21214748 chr3R 21214918 21214932 6 190 4.5 5.0 4.8 1.0 205 chr3R 21214727 intergenic CG5862 + chr3R 21214830 intergenic CG5862 + chr3R 21214932 intergenic CG5862 + chr3R_6_21210001 chr3R_21210001 RAL-42 1543 chr3R 21265466 21265511 chr3R 21265720 21265765 5 254 1.0 6.5 3.8 1.0 299 chr3R 21265466 intergenic ETHR + chr3R 21265616 intergenic Rab1 -,ETHR + chr3R 21265765 intergenic Rab1 - chr3R_5_21265001 chr3R_21265001 RAL-42 1544 chr3R 21321490 21321525 chr3R 21321606 21321641 10 116 0.0 4.0 2.0 3.3 151 chr3R 21321490 intron CG16791 - chr3R 21321566 intron CG16791 - chr3R 21321641 intron CG16791 - chr3R_10_21320001 chr3R_21320001 RAL-42 1545 chr3R 21322970 21322978 chr3R 21323069 21323077 4 98 4.0 3.5 3.8 0.8 107 chr3R 21322970 intron CG16791 - chr3R 21323024 intron CG16791 - chr3R 21323077 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-42 1546 chr3R 21383279 21383286 chr3R 21383347 21383382 4 89 1.0 5.5 3.2 1.0 103 chr3R 21383279 intergenic not near genes chr3R 21383330 intergenic not near genes chr3R 21383382 intergenic not near genes chr3R_4_21380001 chr3R_21380001 RAL-42 1547 chr3R 21464386 21464424 chr3R 21464492 21464528 9 106 4.5 2.5 3.5 2.0 142 chr3R 21464386 intergenic not near genes chr3R 21464457 intergenic not near genes chr3R 21464528 intergenic not near genes chr3R_9_21460001 chr3R_21460001 RAL-42 1548 chr3R 21472003 21472034 chr3R 21472097 21472135 5 95 1.5 8.5 5.0 0.8 132 chr3R 21472003 intergenic not near genes chr3R 21472069 intergenic not near genes chr3R 21472135 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-42 1549 chr3R 21506854 21506908 chr3R 21506960 21507008 16 105 0.5 7.5 4.0 3.2 154 chr3R 21506854 intron C15 + chr3R 21506931 intron C15 + chr3R 21507008 intron C15 + chr3R_16_21505001 chr3R_21505001 RAL-42 1550 chr3R 21519978 21520123 chr3R 21520099 21520237 18 119 1.0 1.0 1.0 9.0 259 chr3R 21519978 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520237 intergenic not near genes chr3R_18_21520001 chr3R_21520001 RAL-42 1551 chr3R 21640086 21640117 chr3R 21640190 21640215 6 101 3.0 2.5 2.8 1.6 129 chr3R 21640086 intron E2f - chr3R 21640150 intron E2f - chr3R 21640215 intron E2f - chr3R_6_21640001 chr3R_21640001 RAL-42 1552 chr3R 21725666 21725675 chr3R 21725822 21725831 4 156 0.0 9.0 4.5 0.7 165 chr3R 21725666 intergenic not near genes chr3R 21725748 intergenic not near genes chr3R 21725831 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-42 1553 chr3R 21731829 21731836 chr3R 21731956 21731963 4 127 5.5 3.5 4.5 0.7 134 chr3R 21731829 intergenic not near genes chr3R 21731896 intergenic not near genes chr3R 21731963 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-42 1554 chr3R 21883960 21883974 chr3R 21884058 21884072 5 98 2.5 4.5 3.5 1.1 112 chr3R 21883960 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884016 intron,3` UTR CR45046 -,fit - chr3R 21884072 3` UTR,exon CR45046 -,fit - chr3R_5_21880001 chr3R_21880001 RAL-42 1555 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 7.0 10.5 8.8 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-42 1556 chr3R 21907534 21907534 chr3R 28831801 28831805 18 6924268 10.0 9.5 9.8 1.7 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-42 1557 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 18.5 10.5 14.5 0.3 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-42 1558 chr3R 21907535 21907535 chr3R 28831801 28831802 29 6924266 10.0 9.5 9.8 2.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-42 1559 chr3R 9620955 9620956 chr3R 21907536 21907536 4 12286580 11.0 10.5 10.8 0.3 12286581 chr3R 9620955 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-42 1560 chr3R 21907536 21907536 chr3R 28831801 28831802 35 6924266 10.5 9.5 10.0 3.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-42 1561 chr3R 21907536 21907536 chr3R 29013339 29013340 5 7105804 10.5 4.5 7.5 0.6 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-42 1562 chr3R 21960885 21960933 chr3R 21961095 21961135 10 207 2.5 1.5 2.0 3.3 250 chr3R 21960885 exon Eip93F + chr3R 21961010 intron Eip93F + chr3R 21961135 intron Eip93F + chr3R_10_21960001 chr3R_21960001 RAL-42 1563 chr3R 21985209 21985256 chr3R 21985334 21985381 13 125 3.0 2.0 2.5 3.7 172 chr3R 21985209 intron Eip93F + chr3R 21985295 intron Eip93F + chr3R 21985381 intron Eip93F + chr3R_13_21985001 chr3R_21985001 RAL-42 1564 chr3R 22234686 22234715 chr3R 22236020 22236049 pogo 6 1337 2.0 3.5 2.8 1.6 1363 chr3R 22234686 intron SKIP + chr3R 22235368 intron SKIP + chr3R 22236049 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-42 1565 chr3R 22336907 22336918 chr3R 22337009 22337020 5 102 2.0 4.5 3.2 1.2 113 chr3R 22336907 intron CG5388 - chr3R 22336964 intron CG5388 - chr3R 22337020 intron CG5388 - chr3R_5_22335001 chr3R_22335001 RAL-42 1566 chr3R 22450524 22450565 chr3R 22453184 22453220 NOF 4 2658 2.0 1.5 1.8 1.4 2696 chr3R 22450524 intron CG34376 + chr3R 22451872 intron CG34376 + chr3R 22453220 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-42 1567 chr3R 22672282 22672329 chr3R 22672395 22672442 7 113 3.0 2.0 2.5 2.0 160 chr3R 22672282 intron wake + chr3R 22672362 intron wake + chr3R 22672442 intron wake + chr3R_7_22670001 chr3R_22670001 RAL-42 1568 chr3R 22673686 22673730 chr3R 22673801 22673845 7 113 2.5 5.5 4.0 1.4 159 chr3R 22673686 intron wake + chr3R 22673766 intron wake + chr3R 22673845 intron wake + chr3R_7_22670001 chr3R_22670001 RAL-42 1569 chr3R 22802899 22802935 chr3R 22802999 22803034 6 100 0.5 6.5 3.5 1.3 135 chr3R 22802899 intergenic not near genes chr3R 22802966 intergenic not near genes chr3R 22803034 intergenic not near genes chr3R_6_22800001 chr3R_22800001 RAL-42 1570 chr3R 22860133 22860176 chr3R 22860245 22860288 5 107 0.0 1.0 0.5 3.3 155 chr3R 22860133 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860288 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-42 1571 chr3R 22863912 22863925 chr3R 22864010 22864023 7 97 1.5 4.5 3.0 1.8 111 chr3R 22863912 intergenic not near genes chr3R 22863968 intergenic not near genes chr3R 22864023 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-42 1572 chr3R 22877317 22877330 chr3R 22877458 22877478 5 145 0.5 12.0 6.2 0.7 161 chr3R 22877317 intergenic not near genes chr3R 22877398 intergenic not near genes chr3R 22877478 intergenic not near genes chr3R_5_22875001 chr3R_22875001 RAL-42 1573 chr3R 22880919 22880952 chr3R 22881077 22881110 10 157 2.5 4.0 3.2 2.4 191 chr3R 22880919 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881110 intergenic not near genes chr3R_10_22880001 chr3R_22880001 RAL-42 1574 chr3R 22881184 22881230 chr3R 22884910 22884955 Doc 5 3723 3.0 3.5 3.2 1.2 3771 chr3R 22881184 intergenic not near genes chr3R 22883070 intergenic not near genes chr3R 22884955 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-42 1575 chr3R 22993489 22993536 chr3R 22993643 22993661 9 148 1.0 1.5 1.2 4.1 172 chr3R 22993489 intron Nha2 - chr3R 22993575 intron Nha2 - chr3R 22993661 intron Nha2 - chr3R_9_22990001 chr3R_22990001 RAL-42 1576 chr3R 23041019 23041065 chr3R 23041669 23041715 11 649 4.5 7.5 6.0 1.6 696 chr3R 23041019 5` UTR CR44226 + chr3R 23041367 intergenic CR44226 + chr3R 23041715 intergenic CR44226 + chr3R_11_23040001 chr3R_23040001 RAL-42 1577 chr3R 23070639 23070700 chr3R 23070739 23070798 9 105 0.0 0.0 0.0 9.0 159 chr3R 23070639 3` UTR CG13830 - chr3R 23070718 3` UTR CG13830 - chr3R 23070798 3` UTR CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-42 1578 chr3R 23197940 23197965 chr3R 23198039 23198064 5 99 3.5 4.5 4.0 1.0 124 chr3R 23197940 exon cnc - chr3R 23198002 intron cnc - chr3R 23198064 intron cnc - chr3R_5_23195001 chr3R_23195001 RAL-42 1579 chr3R 23356995 23357017 chr3R 23357101 23357123 5 106 5.5 5.0 5.2 0.8 128 chr3R 23356995 intron Sec13 + chr3R 23357059 intron Sec13 + chr3R 23357123 intron Sec13 + chr3R_5_23355001 chr3R_23355001 RAL-42 1580 chr3R 23385583 23385589 chr3R 23385716 23385731 4 140 3.0 0.5 1.8 1.4 148 chr3R 23385583 intergenic not near genes chr3R 23385657 intergenic not near genes chr3R 23385731 intergenic not near genes chr3R_4_23385001 chr3R_23385001 RAL-42 1581 chr3R 23390945 23390951 chr3R 23391047 23391053 5 102 2.5 0.0 1.2 2.3 108 chr3R 23390945 intergenic CR43387 + chr3R 23390999 intergenic CR43387 + chr3R 23391053 intergenic CR43387 + chr3R_5_23390001 chr3R_23390001 RAL-42 1582 chr3R 23497930 23497973 chr3R 23498028 23498077 4 102 1.0 2.5 1.8 1.4 147 chr3R 23497930 intergenic not near genes chr3R 23498004 intergenic not near genes chr3R 23498077 intergenic not near genes chr3R_4_23495001 chr3R_23495001 RAL-42 1583 chr3R 23558378 23558418 chr3R 23560179 23560219 Bari1 13 1799 4.0 3.5 3.8 2.7 1841 chr3R 23558378 intron beat-IV + chr3R 23559298 intron beat-IV + chr3R 23560219 intron beat-IV + chr3R_13_23555001 chr3R_23555001 RAL-42 1584 chr3R 23684699 23684728 chr3R 23685185 23685206 roo 6 493 2.0 1.5 1.8 2.1 507 chr3R 23684699 exon CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685206 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-42 1585 chr3R 23733111 23733145 chr3R 23733246 23733280 7 134 3.0 2.0 2.5 2.0 169 chr3R 23733111 intron Rpn9 - chr3R 23733196 intron Rpn9 - chr3R 23733280 5` UTR Rpn9 - chr3R_7_23730001 chr3R_23730001 RAL-42 1586 chr3R 23820621 23820657 chr3R 23820725 23820761 4 104 1.0 2.5 1.8 1.4 140 chr3R 23820621 5` UTR CG34355 + chr3R 23820691 5` UTR CG34355 + chr3R 23820761 5` UTR CG34355 + chr3R_4_23820001 chr3R_23820001 RAL-42 1587 chr3R 23846101 23846146 chr3R 23846206 23846241 10 102 5.5 4.5 5.0 1.7 140 chr3R 23846101 intron CG34355 + chr3R 23846171 intron CG34355 + chr3R 23846241 intron CG34355 + chr3R_10_23845001 chr3R_23845001 RAL-42 1588 chr3R 23851067 23851087 chr3R 23858754 23858774 opus 5 7687 2.5 8.0 5.2 0.8 7707 chr3R 23851067 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858774 intergenic not near genes chr3R_5_23850001 chr3R_23850001 RAL-42 1589 chr3R 23939200 23939237 chr3R 23939294 23939342 4 100 7.5 5.0 6.2 0.6 142 chr3R 23939200 intron Gdh - chr3R 23939271 intron Gdh - chr3R 23939342 intron Gdh - chr3R_4_23935001 chr3R_23935001 RAL-42 1590 chr3R 23944901 23944934 chr3R 23944998 23945036 12 102 5.5 1.5 3.5 2.7 135 chr3R 23944901 intron CG12268 - chr3R 23944968 intron CG12268 - chr3R 23945036 exon CG12268 - chr3R_12_23940001 chr3R_23940001 RAL-42 1591 chr3R 23949021 23949075 chr3R 23949118 23949172 13 96 3.0 5.0 4.0 2.6 151 chr3R 23949021 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949172 intergenic not near genes chr3R_13_23945001 chr3R_23945001 RAL-42 1592 chr3R 24011648 24011680 chr3R 24011751 24011783 6 103 1.5 3.5 2.5 1.7 135 chr3R 24011648 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011783 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-42 1593 chr3R 24021606 24021659 chr3R 24021716 24021769 11 110 2.5 3.5 3.0 2.8 163 chr3R 24021606 intron KrT95D - chr3R 24021688 intron KrT95D - chr3R 24021769 intron KrT95D - chr3R_11_24020001 chr3R_24020001 RAL-42 1594 chr3R 24199728 24199773 chr3R 24199828 24199868 15 98 4.0 3.5 3.8 3.1 140 chr3R 24199728 intron twin - chr3R 24199798 intron twin - chr3R 24199868 intron twin - chr3R_15_24195001 chr3R_24195001 RAL-42 1595 chr3R 24207203 24207242 chr3R 24212299 24212338 flea 8 5095 2.0 6.0 4.0 1.6 5135 chr3R 24207203 intron twin - chr3R 24209770 intron twin - chr3R 24212338 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-42 1596 chr3R 24359622 24359634 chr3R 24359730 24359742 9 108 6.0 8.0 7.0 1.1 120 chr3R 24359622 intron CG18528 - chr3R 24359682 intron CG18528 - chr3R 24359742 intron CG18528 - chr3R_9_24355001 chr3R_24355001 RAL-42 1597 chr3R 24431595 24431621 chr3R 24431694 24431720 6 99 3.5 0.0 1.8 2.1 125 chr3R 24431595 intron nAChRalpha1 - chr3R 24431658 intron nAChRalpha1 - chr3R 24431720 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-42 1598 chr3R 24434220 24434268 chr3R 24434318 24434366 11 95 4.0 3.0 3.5 2.4 146 chr3R 24434220 intron nAChRalpha1 - chr3R 24434293 intron nAChRalpha1 - chr3R 24434366 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-42 1599 chr3R 24467908 24467949 chr3R 24468157 24468198 7 249 3.5 4.5 4.0 1.4 290 chr3R 24467908 intergenic not near genes chr3R 24468053 intergenic not near genes chr3R 24468198 intergenic not near genes chr3R_7_24465001 chr3R_24465001 RAL-42 1600 chr3R 24493259 24493508 chr3R 24493508 24493613 BS 13 240 0.0 0.0 0.0 13.0 354 chr3R 24493259 intergenic not near genes chr3R 24493436 intergenic not near genes chr3R 24493613 intergenic not near genes chr3R_13_24490001 chr3R_24490001 RAL-42 1601 chr3R 24525428 24525477 chr3R 24525913 24525962 12 482 2.0 1.5 1.8 4.3 534 chr3R 24525428 intron CG13618 + chr3R 24525695 intron CG13618 + chr3R 24525962 intron CG13618 + chr3R_12_24525001 chr3R_24525001 RAL-42 1602 chr3R 24527785 24527831 chr3R 24527896 24527942 14 111 4.0 1.5 2.8 3.7 157 chr3R 24527785 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527942 intergenic CG6607 +,CG13618 + chr3R_14_24525001 chr3R_24525001 RAL-42 1603 chr3R 24667601 24667626 chr3R 24667698 24667723 6 97 4.0 0.0 2.0 2.0 122 chr3R 24667601 intron slo + chr3R 24667662 intron slo + chr3R 24667723 intron slo + chr3R_6_24665001 chr3R_24665001 RAL-42 1604 chr3R 24730083 24730118 chr3R 24732470 24732494 Doc 6 2391 3.0 0.0 1.5 2.4 2411 chr3R 24730083 intron tok + chr3R 24731288 intron tok + chr3R 24732494 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-42 1605 chr3R 24789980 24790005 chr3R 24790145 24790170 8 164 7.5 0.5 4.0 1.6 190 chr3R 24789980 intron,5` UTR Ets96B +,CG13634 - chr3R 24790075 intron,5` UTR Ets96B +,CG13634 - chr3R 24790170 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-42 1606 chr3R 24854867 24854913 chr3R 24854969 24855015 21 102 3.0 4.5 3.8 4.4 148 chr3R 24854867 3` UTR,3` UTR nct +,HdacX - chr3R 24854941 3` UTR HdacX - chr3R 24855015 3` UTR HdacX - chr3R_21_24850001 chr3R_24850001 RAL-42 1607 chr3R 24927118 24927148 chr3R 24931929 24931959 Doc 15 4811 9.5 3.5 6.5 2.0 4841 chr3R 24927118 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931959 intergenic CG11771 + chr3R_15_24925001 chr3R_24925001 RAL-42 1608 chr3R 24974898 24974933 chr3R 24974996 24975032 10 97 2.5 7.0 4.8 1.7 134 chr3R 24974898 intergenic not near genes chr3R 24974965 intergenic not near genes chr3R 24975032 intergenic not near genes chr3R_10_24970001 chr3R_24970001 RAL-42 1609 chr3R 25004894 25004905 chr3R 25004995 25005007 7 102 1.0 3.5 2.2 2.2 113 chr3R 25004894 intron tnc + chr3R 25004950 intron tnc + chr3R 25005007 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-42 1610 chr3R 25027522 25027567 chr3R 25027754 25027800 16 231 4.5 3.0 3.8 3.3 278 chr3R 25027522 intron Hr96 + chr3R 25027661 intron Hr96 + chr3R 25027800 intron Hr96 + chr3R_16_25025001 chr3R_25025001 RAL-42 1611 chr3R 25302661 25302707 chr3R 25302930 25302976 10 266 1.0 2.0 1.5 4.0 315 chr3R 25302661 exon CG31370 + chr3R 25302818 exon CG31370 + chr3R 25302976 exon CG31370 + chr3R_10_25300001 chr3R_25300001 RAL-42 1612 chr3R 25324370 25324387 chr3R 25328955 25328972 Doc 8 4585 2.0 4.5 3.2 1.9 4602 chr3R 25324370 exon CHKov1 - chr3R 25326671 intron CHKov1 - chr3R 25328972 exon CHKov1 - chr3R_8_25325001 chr3R_25325001 RAL-42 1613 chr3R 25337039 25337087 chr3R 25337151 25337199 11 110 3.5 4.5 4.0 2.2 160 chr3R 25337039 exon CG11902 + chr3R 25337119 exon CG11902 + chr3R 25337199 exon CG11902 + chr3R_11_25335001 chr3R_25335001 RAL-42 1614 chr3R 25354778 25354827 chr3R 25354884 25354935 15 108 6.0 4.0 5.0 2.5 157 chr3R 25354778 intron Fur1 - chr3R 25354856 intron Fur1 - chr3R 25354935 intron Fur1 - chr3R_15_25350001 chr3R_25350001 RAL-42 1615 chr3R 25671267 25671274 chr3R 25671340 25671394 6 112 2.0 0.0 1.0 3.0 127 chr3R 25671267 intron Lgr3 + chr3R 25671330 intron Lgr3 + chr3R 25671394 intron Lgr3 + chr3R_6_25670001 chr3R_25670001 RAL-42 1616 chr3R 25689114 25689152 chr3R 25689242 25689279 5 128 4.0 3.0 3.5 1.1 165 chr3R 25689114 intergenic not near genes chr3R 25689196 intergenic not near genes chr3R 25689279 intergenic not near genes chr3R_5_25685001 chr3R_25685001 RAL-42 1617 chr3R 25725814 25725850 chr3R 25734994 25735030 roo 7 9180 3.5 2.5 3.0 1.8 9216 chr3R 25725814 intron LpR2 - chr3R 25730422 intron LpR2 - chr3R 25735030 intron LpR2 - chr3R_7_25730001 chr3R_25730001 RAL-42 1618 chr3R 25765861 25765910 chr3R 25765957 25765974 12 92 3.5 1.0 2.2 3.8 113 chr3R 25765861 intergenic not near genes chr3R 25765918 intergenic not near genes chr3R 25765974 intergenic not near genes chr3R_12_25765001 chr3R_25765001 RAL-42 1619 chr3R 25832677 25832707 chr3R 25841879 25841899 roo 4 9198 1.5 4.5 3.0 1.0 9222 chr3R 25832677 exon alpha4GT2 + chr3R 25837288 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-42 1620 chr3R 25843632 25843651 chr3R 25843782 25843801 4 150 2.5 1.0 1.8 1.4 169 chr3R 25843632 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843801 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-42 1621 chr3R 26121956 26121976 chr3R 26122073 26122093 4 117 0.5 3.5 2.0 1.3 137 chr3R 26121956 intron CG31324 + chr3R 26122024 intron CG31324 + chr3R 26122093 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-42 1622 chr3R 26126530 26126570 chr3R 26126636 26126676 16 106 4.0 3.5 3.8 3.3 146 chr3R 26126530 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126676 intron,5` UTR CG31324 +,CG14556 + chr3R_16_26125001 chr3R_26125001 RAL-42 1623 chr3R 26292095 26292130 chr3R 26292195 26292230 5 100 2.5 6.5 4.5 0.9 135 chr3R 26292095 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292230 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-42 1624 chr3R 26365090 26365141 chr3R 26365195 26365245 13 104 1.5 5.0 3.2 3.1 155 chr3R 26365090 intergenic not near genes chr3R 26365168 intergenic not near genes chr3R 26365245 intergenic not near genes chr3R_13_26365001 chr3R_26365001 RAL-42 1625 chr3R 26376317 26376358 chr3R 26385487 26385528 roo 10 9173 3.5 0.0 1.8 3.6 9211 chr3R 26376317 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385528 intergenic not near genes chr3R_10_26380001 chr3R_26380001 RAL-42 1626 chr3R 26463757 26463807 chr3R 26463950 26463977 12 190 3.0 3.0 3.0 3.0 220 chr3R 26463757 intron CG5455 + chr3R 26463867 intron CG5455 + chr3R 26463977 intron CG5455 + chr3R_12_26460001 chr3R_26460001 RAL-42 1627 chr3R 26468259 26468281 chr3R 26472862 26472884 4 4603 15.5 48.0 31.8 0.1 4625 chr3R 26468259 exon CG5455 + chr3R 26470572 3` UTR plum - chr3R 26472884 3` UTR plum - chr3R_4_26470001 chr3R_26470001 RAL-42 1628 chr3R 26510485 26510533 chr3R 26519566 26519614 roo 10 9081 3.0 7.0 5.0 1.7 9129 chr3R 26510485 intron plum - chr3R 26515050 intron plum - chr3R 26519614 intron,5` UTR plum -,CR45226 + chr3R_10_26515001 chr3R_26515001 RAL-42 1629 chr3R 26611321 26611365 chr3R 26611417 26611460 10 91 2.0 3.0 2.5 2.9 139 chr3R 26611321 intergenic not near genes chr3R 26611390 intergenic not near genes chr3R 26611460 intergenic not near genes chr3R_10_26610001 chr3R_26610001 RAL-42 1630 chr3R 26641626 26641659 chr3R 26641732 26641732 10 99 6.5 4.0 5.2 1.6 106 chr3R 26641626 intergenic not near genes chr3R 26641679 intergenic not near genes chr3R 26641732 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-42 1631 chr3R 26642715 26642762 chr3R 26643128 26643159 jockey 13 409 6.5 6.5 6.5 1.7 444 chr3R 26642715 intergenic not near genes chr3R 26642937 intergenic not near genes chr3R 26643159 intergenic not near genes chr3R_13_26640001 chr3R_26640001 RAL-42 1632 chr3R 26685849 26685889 chr3R 26686043 26686080 14 194 1.5 4.0 2.8 3.7 231 chr3R 26685849 intergenic not near genes chr3R 26685964 intergenic not near genes chr3R 26686080 intergenic not near genes chr3R_14_26685001 chr3R_26685001 RAL-42 1633 chr3R 26740271 26740321 chr3R 26740366 26740417 13 96 0.5 4.0 2.2 4.1 146 chr3R 26740271 intergenic not near genes chr3R 26740344 intergenic not near genes chr3R 26740417 intergenic not near genes chr3R_13_26740001 chr3R_26740001 RAL-42 1634 chr3R 26770228 26770263 chr3R 26770317 26770360 6 96 5.0 5.0 5.0 1.0 132 chr3R 26770228 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770360 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-42 1635 chr3R 26771237 26771270 chr3R 26771431 26771464 6 194 3.5 0.0 1.8 2.1 227 chr3R 26771237 intergenic not near genes chr3R 26771350 intergenic not near genes chr3R 26771464 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-42 1636 chr3R 27007385 27007437 chr3R 27016540 27016592 roo 19 9153 6.5 4.5 5.5 2.9 9207 chr3R 27007385 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016592 intron RYa-R + chr3R_19_27010001 chr3R_27010001 RAL-42 1637 chr3R 27027662 27027720 chr3R 27027766 27027820 9 102 1.5 2.5 2.0 3.0 158 chr3R 27027662 intron RYa-R + chr3R 27027741 intron RYa-R + chr3R 27027820 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-42 1638 chr3R 27028706 27028748 chr3R 27028805 27028847 5 99 2.0 2.0 2.0 1.7 141 chr3R 27028706 intron RYa-R + chr3R 27028776 intron RYa-R + chr3R 27028847 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-42 1639 chr3R 27030313 27030328 chr3R 27030621 27030637 6 309 4.5 4.0 4.2 1.2 324 chr3R 27030313 intron RYa-R + chr3R 27030475 intron RYa-R + chr3R 27030637 intron RYa-R + chr3R_6_27030001 chr3R_27030001 RAL-42 1640 chr3R 27034756 27034806 chr3R 27034860 27034910 13 104 2.0 1.5 1.8 4.6 154 chr3R 27034756 intron RYa-R + chr3R 27034833 intron RYa-R + chr3R 27034910 intron RYa-R + chr3R_13_27030001 chr3R_27030001 RAL-42 1641 chr3R 27071400 27071443 chr3R 27071731 27071779 12 335 1.0 8.0 4.5 2.2 379 chr3R 27071400 intergenic not near genes chr3R 27071590 intergenic not near genes chr3R 27071779 intergenic not near genes chr3R_12_27070001 chr3R_27070001 RAL-42 1642 chr3R 27107145 27107190 chr3R 27107384 27107434 14 241 4.5 3.0 3.8 2.9 289 chr3R 27107145 intergenic not near genes chr3R 27107290 intergenic not near genes chr3R 27107434 intergenic not near genes chr3R_14_27105001 chr3R_27105001 RAL-42 1643 chr3R 27140500 27140546 chr3R 27148130 27148176 412 8 7627 0.5 1.5 1.0 4.0 7676 chr3R 27140500 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148176 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-42 1644 chr3R 27152362 27152405 chr3R 27152459 27152471 11 98 3.0 6.5 4.8 1.9 109 chr3R 27152362 intron Men-b + chr3R 27152416 intron Men-b + chr3R 27152471 intron Men-b + chr3R_11_27150001 chr3R_27150001 RAL-42 1645 chr3R 27193062 27193092 chr3R 27193280 27193310 10 218 7.0 4.0 5.5 1.5 248 chr3R 27193062 intron Ser - chr3R 27193186 intron Ser - chr3R 27193310 intron Ser - chr3R_10_27190001 chr3R_27190001 RAL-42 1646 chr3R 27221228 27221255 chr3R 27221338 27221364 9 110 6.5 5.0 5.8 1.3 136 chr3R 27221228 intergenic not near genes chr3R 27221296 intergenic not near genes chr3R 27221364 intergenic not near genes chr3R_9_27220001 chr3R_27220001 RAL-42 1647 chr3R 27225565 27225610 chr3R 27225675 27225721 7 111 4.5 3.5 4.0 1.4 156 chr3R 27225565 intergenic not near genes chr3R 27225643 intergenic not near genes chr3R 27225721 intergenic not near genes chr3R_7_27225001 chr3R_27225001 RAL-42 1648 chr3R 27329456 27329502 chr3R 27329553 27329599 21 95 4.0 7.0 5.5 3.2 143 chr3R 27329456 intergenic CG3330 - chr3R 27329528 intergenic CG3330 - chr3R 27329599 intergenic CG3330 - chr3R_21_27325001 chr3R_27325001 RAL-42 1649 chr3R 27335930 27335965 chr3R 27336029 27336066 8 96 2.0 0.0 1.0 4.0 136 chr3R 27335930 intergenic not near genes chr3R 27335998 intergenic not near genes chr3R 27336066 intergenic not near genes chr3R_8_27335001 chr3R_27335001 RAL-42 1650 chr3R 27342795 27342815 chr3R 27351396 27351416 Tirant 5 8601 1.0 2.5 1.8 1.8 8621 chr3R 27342795 intron CG42534 + chr3R 27347106 intron CG42534 + chr3R 27351416 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-42 1651 chr3R 27443392 27443408 chr3R 27443489 27443505 5 97 7.0 6.5 6.8 0.6 113 chr3R 27443392 intergenic not near genes chr3R 27443448 intergenic not near genes chr3R 27443505 intergenic not near genes chr3R_5_27440001 chr3R_27440001 RAL-42 1652 chr3R 27496574 27496597 chr3R 27496699 27496722 7 125 9.0 2.0 5.5 1.1 148 chr3R 27496574 intergenic not near genes chr3R 27496648 intergenic not near genes chr3R 27496722 intergenic not near genes chr3R_7_27495001 chr3R_27495001 RAL-42 1653 chr3R 27521143 27521184 chr3R 27530372 27530413 roo 17 9229 5.0 5.5 5.2 2.7 9270 chr3R 27521143 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530413 intron CG12885 + chr3R_17_27525001 chr3R_27525001 RAL-42 1654 chr3R 27571564 27571604 chr3R 27571687 27571726 7 123 5.5 3.5 4.5 1.3 162 chr3R 27571564 intron wdb - chr3R 27571645 intron wdb - chr3R 27571726 intron wdb - chr3R_7_27570001 chr3R_27570001 RAL-42 1655 chr3R 27706760 27706800 chr3R 27706857 27706872 11 94 2.5 2.0 2.2 3.4 112 chr3R 27706760 intergenic CG12428 -,CG12877 + chr3R 27706816 intergenic CG12428 -,CG12877 + chr3R 27706872 intergenic CG12428 -,CG12877 + chr3R_11_27705001 chr3R_27705001 RAL-42 1656 chr3R 27725551 27725590 chr3R 27731013 27731052 I-element 4 5462 6.0 7.5 6.8 0.5 5501 chr3R 27725551 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731052 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-42 1657 chr3R 27735214 27735259 chr3R 27735795 27735838 19 581 6.5 9.0 7.8 2.2 624 chr3R 27735214 intergenic not near genes chr3R 27735526 intergenic not near genes chr3R 27735838 intergenic not near genes chr3R_19_27735001 chr3R_27735001 RAL-42 1658 chr3R 27799924 27799952 chr3R 27800026 27800054 7 102 4.0 4.5 4.2 1.3 130 chr3R 27799924 intron CG34353 - chr3R 27799989 intron CG34353 - chr3R 27800054 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-42 1659 chr3R 27803259 27803272 chr3R 27803346 27803397 4 112 1.0 1.5 1.2 1.8 138 chr3R 27803259 intron CG34353 - chr3R 27803328 intron CG34353 - chr3R 27803397 intron CG34353 - chr3R_4_27800001 chr3R_27800001 RAL-42 1660 chr3R 27829881 27829895 chr3R 27829980 27829994 5 99 7.5 0.0 3.8 1.0 113 chr3R 27829881 intron CG34353 - chr3R 27829938 intron CG34353 - chr3R 27829994 intron CG34353 - chr3R_5_27825001 chr3R_27825001 RAL-42 1661 chr3R 27856740 27856787 chr3R 27858243 27858289 hopper2 6 1503 5.5 3.5 4.5 1.1 1549 chr3R 27856740 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858289 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-42 1662 chr3R 28068476 28068525 chr3R 28073938 28073987 I-element 7 5461 0.0 1.0 0.5 4.7 5511 chr3R 28068476 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073987 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-42 1663 chr3R 28173657 28173703 chr3R 28181107 28181157 mdg1 7 7453 4.0 1.0 2.5 2.0 7500 chr3R 28173657 intron CG34354 + chr3R 28177407 intron CG34354 + chr3R 28181157 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-42 1664 chr3R 28224889 28224933 chr3R 28224996 28225034 8 105 4.5 1.5 3.0 2.0 145 chr3R 28224889 intron CG34354 + chr3R 28224962 intron CG34354 + chr3R 28225034 intron CG34354 + chr3R_8_28220001 chr3R_28220001 RAL-42 1665 chr3R 28282975 28283010 chr3R 28283624 28283659 10 649 5.0 4.5 4.8 1.7 684 chr3R 28282975 exon CG34436 + chr3R 28283317 exon CG34436 + chr3R 28283659 intergenic CG34437 +,CG34436 + chr3R_10_28280001 chr3R_28280001 RAL-42 1666 chr3R 28302099 28302131 chr3R 28302541 28302590 jockey 14 457 6.5 6.5 6.5 1.9 491 chr3R 28302099 intergenic not near genes chr3R 28302344 intergenic not near genes chr3R 28302590 intergenic not near genes chr3R_14_28300001 chr3R_28300001 RAL-42 1667 chr3R 28319321 28319367 chr3R 28319421 28319467 13 100 3.0 3.5 3.2 3.1 146 chr3R 28319321 3` UTR larp - chr3R 28319394 3` UTR larp - chr3R 28319467 3` UTR larp - chr3R_13_28315001 chr3R_28315001 RAL-42 1668 chr3R 28331491 28331527 chr3R 28331590 28331626 17 99 3.5 5.0 4.2 3.3 135 chr3R 28331491 intron larp - chr3R 28331558 intron larp - chr3R 28331626 intron larp - chr3R_17_28330001 chr3R_28330001 RAL-42 1669 chr3R 28352493 28352545 chr3R 28352853 28352878 16 356 1.0 2.5 1.8 5.7 385 chr3R 28352493 exon Or98b + chr3R 28352686 exon Or98b + chr3R 28352878 exon Or98b + chr3R_16_28350001 chr3R_28350001 RAL-42 1670 chr3R 28393677 28393943 chr3R 28393797 28394043 11 116 4.5 3.5 4.0 2.2 366 chr3R 28393677 intergenic not near genes chr3R 28393860 intergenic not near genes chr3R 28394043 intergenic not near genes chr3R_11_28390001 chr3R_28390001 RAL-42 1671 chr3R 28407690 28407728 chr3R 28407790 28407834 8 102 3.0 3.5 3.2 1.9 144 chr3R 28407690 intergenic not near genes chr3R 28407762 intergenic not near genes chr3R 28407834 intergenic not near genes chr3R_8_28405001 chr3R_28405001 RAL-42 1672 chr3R 28546942 28546985 chr3R 28547068 28547111 11 125 5.0 3.5 4.2 2.1 169 chr3R 28546942 intergenic not near genes chr3R 28547026 intergenic not near genes chr3R 28547111 intergenic not near genes chr3R_11_28545001 chr3R_28545001 RAL-42 1673 chr3R 28594080 28594131 chr3R 28594178 28594230 10 98 1.0 8.5 4.8 1.7 150 chr3R 28594080 5` UTR CR43440 + chr3R 28594155 5` UTR CR43440 + chr3R 28594230 5` UTR CR43440 + chr3R_10_28590001 chr3R_28590001 RAL-42 1674 chr3R 28633174 28633219 chr3R 28633274 28633296 7 97 3.0 3.0 3.0 1.8 122 chr3R 28633174 intron CG10011 - chr3R 28633235 intron CG10011 - chr3R 28633296 intron CG10011 - chr3R_7_28630001 chr3R_28630001 RAL-42 1675 chr3R 28758305 28758318 chr3R 28771332 28771345 Stalker4 4 13027 2.5 5.0 3.8 0.8 13040 chr3R 28758305 intergenic aqrs - chr3R 28764825 intergenic not near genes chr3R 28771345 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-42 1676 chr3R 28763906 28763913 chr3R 28771369 28771376 Stalker4 4 7463 0.0 10.5 5.2 0.6 7470 chr3R 28763906 intergenic not near genes chr3R 28767641 intergenic not near genes chr3R 28771376 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-42 1677 chr3R 28792874 28792904 chr3R 28797978 28797999 jockey 4 5105 0.5 6.0 3.2 1.0 5125 chr3R 28792874 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797999 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-42 1678 chr3R 28823094 28823139 chr3R 28823191 28823216 10 86 0.5 2.5 1.5 4.0 122 chr3R 28823094 exon CG1647 + chr3R 28823155 exon CG1647 + chr3R 28823216 exon CG1647 + chr3R_10_28820001 chr3R_28820001 RAL-42 1679 chr3R 21907534 21907535 chr3R 28831799 28831803 61 6924267 10.0 9.5 9.8 5.6 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_61_25365001 chr3R_25365001 RAL-42 1680 chr3R 28922751 28922768 chr3R 28922847 28922864 4 96 5.0 0.0 2.5 1.1 113 chr3R 28922751 3` UTR Doa + chr3R 28922808 intergenic Doa +,CG11828 + chr3R 28922864 intergenic Doa +,CG11828 + chr3R_4_28920001 chr3R_28920001 RAL-42 1681 chr3R 28950233 28950248 chr3R 28950334 28950349 6 101 9.5 5.5 7.5 0.7 116 chr3R 28950233 intron CG14521 - chr3R 28950291 intron CG14521 - chr3R 28950349 intron CG14521 - chr3R_6_28950001 chr3R_28950001 RAL-42 1682 chr3R 29032734 29032767 chr3R 29032820 29032860 10 90 5.0 1.0 3.0 2.5 126 chr3R 29032734 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032797 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032860 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_10_29030001 chr3R_29030001 RAL-42 1683 chr3R 29034051 29034097 chr3R 29034467 29034512 6 415 0.0 3.5 1.8 2.1 461 chr3R 29034051 5` UTR CR45044 + chr3R 29034282 intergenic CR45044 +,beta4GalNAcTB -,Cpsf100 + chr3R 29034512 intergenic Cpsf100 +,CR45044 + chr3R_6_29030001 chr3R_29030001 RAL-42 1684 chr3R 29070048 29070077 chr3R 29070148 29070178 8 98 5.0 7.5 6.2 1.1 130 chr3R 29070048 intron CG11873 + chr3R 29070113 intron CG11873 + chr3R 29070178 intron CG11873 + chr3R_8_29070001 chr3R_29070001 RAL-42 1685 chr3R 29090737 29090782 chr3R 29090874 29090919 12 136 3.0 4.0 3.5 2.7 182 chr3R 29090737 intron CG11873 + chr3R 29090828 intron CG11873 + chr3R 29090919 intron CG11873 + chr3R_12_29090001 chr3R_29090001 RAL-42 1686 chr3R 29213041 29213091 chr3R 29213144 29213194 17 103 5.0 2.0 3.5 3.8 153 chr3R 29213041 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213194 intergenic not near genes chr3R_17_29210001 chr3R_29210001 RAL-42 1687 chr3R 29240032 29240056 chr3R 29240130 29240161 4 103 0.0 2.0 1.0 2.0 129 chr3R 29240032 intron CG31427 - chr3R 29240096 intron CG31427 - chr3R 29240161 intron CG31427 - chr3R_4_29240001 chr3R_29240001 RAL-42 1688 chr3R 29240489 29240499 chr3R 29240593 29240603 5 104 4.0 9.0 6.5 0.7 114 chr3R 29240489 intergenic CG31445 -,CG31427 - chr3R 29240546 intergenic CG31445 -,CG31427 - chr3R 29240603 3` UTR CG31445 - chr3R_5_29240001 chr3R_29240001 RAL-42 1689 chr3R 29319808 29319841 chr3R 29320147 29320180 jockey 16 339 4.5 6.5 5.5 2.5 372 chr3R 29319808 intergenic Cnx99A - chr3R 29319994 intergenic Cnx99A - chr3R 29320180 intergenic not near genes chr3R_16_29315001 chr3R_29315001 RAL-42 1690 chr3R 29332272 29332308 chr3R 29332369 29332405 7 96 3.0 7.0 5.0 1.2 133 chr3R 29332272 intergenic not near genes chr3R 29332338 intergenic not near genes chr3R 29332405 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-42 1691 chr3R 29355941 29355981 chr3R 29356040 29356081 5 100 3.5 2.0 2.8 1.3 140 chr3R 29355941 intergenic CR45547 - chr3R 29356011 intergenic CR45547 - chr3R 29356081 intergenic CR45547 - chr3R_5_29355001 chr3R_29355001 RAL-42 1692 chr3R 29362853 29362878 chr3R 29362962 29362987 7 107 0.0 1.0 0.5 4.7 134 chr3R 29362853 intergenic not near genes chr3R 29362920 intergenic not near genes chr3R 29362987 intergenic not near genes chr3R_7_29360001 chr3R_29360001 RAL-42 1693 chr3R 29402969 29403006 chr3R 29403084 29403121 15 115 2.0 6.0 4.0 3.0 152 chr3R 29402969 intron Ptp99A + chr3R 29403045 intron Ptp99A + chr3R 29403121 intron Ptp99A + chr3R_15_29400001 chr3R_29400001 RAL-42 1694 chr3R 29406605 29406643 chr3R 29407901 29407949 jockey 17 1300 4.5 5.5 5.0 2.8 1344 chr3R 29406605 intron Ptp99A + chr3R 29407277 intron Ptp99A + chr3R 29407949 intron Ptp99A + chr3R_17_29405001 chr3R_29405001 RAL-42 1695 chr3R 29429779 29429799 chr3R 29429865 29429877 5 88 3.5 0.0 1.8 1.8 98 chr3R 29429779 intron Ptp99A + chr3R 29429828 intron Ptp99A + chr3R 29429877 intron Ptp99A + chr3R_5_29425001 chr3R_29425001 RAL-42 1696 chr3R 29446972 29447021 chr3R 29447079 29447110 5 100 2.5 1.0 1.8 1.8 138 chr3R 29446972 intron Ptp99A + chr3R 29447041 intron Ptp99A + chr3R 29447110 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-42 1697 chr3R 29449336 29449388 chr3R 29449434 29449486 13 97 2.0 1.5 1.8 4.6 150 chr3R 29449336 intron Ptp99A + chr3R 29449411 intron Ptp99A + chr3R 29449486 intron Ptp99A + chr3R_13_29445001 chr3R_29445001 RAL-42 1698 chr3R 29472020 29472034 chr3R 29472101 29472140 5 105 2.5 3.5 3.0 1.2 120 chr3R 29472020 intron Ptp99A + chr3R 29472080 intron Ptp99A + chr3R 29472140 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-42 1699 chr3R 29474416 29474463 chr3R 29474523 29474570 26 107 1.5 8.5 5.0 4.3 154 chr3R 29474416 intron Ptp99A + chr3R 29474493 intron Ptp99A + chr3R 29474570 intron Ptp99A + chr3R_26_29470001 chr3R_29470001 RAL-42 1700 chr3R 29581536 29581566 chr3R 29581637 29581667 7 101 4.0 1.0 2.5 2.0 131 chr3R 29581536 intergenic not near genes chr3R 29581602 intergenic not near genes chr3R 29581667 intergenic not near genes chr3R_7_29580001 chr3R_29580001 RAL-42 1701 chr3R 29624945 29624989 chr3R 29625041 29625079 8 95 3.0 4.0 3.5 1.8 134 chr3R 29624945 intergenic not near genes chr3R 29625012 intergenic not near genes chr3R 29625079 intergenic not near genes chr3R_8_29625001 chr3R_29625001 RAL-42 1702 chr3R 29655642 29655667 chr3R 29655741 29655766 6 99 3.0 2.5 2.8 1.6 124 chr3R 29655642 intron Dop1R2 - chr3R 29655704 intron Dop1R2 - chr3R 29655766 intron Dop1R2 - chr3R_6_29655001 chr3R_29655001 RAL-42 1703 chr3R 29738251 29738276 chr3R 29739733 29739763 hobo 4 1486 4.5 3.0 3.8 0.8 1512 chr3R 29738251 intergenic CG1969 +,CG7598 + chr3R 29739007 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-42 1704 chr3R 29758927 29758968 chr3R 29759025 29759066 17 94 3.0 5.5 4.2 3.3 139 chr3R 29758927 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759066 intergenic CR44953 - chr3R_17_29755001 chr3R_29755001 RAL-42 1705 chr3R 29760340 29760385 chr3R 29761561 29761606 pogo 14 1221 5.0 7.5 6.2 1.9 1266 chr3R 29760340 intergenic not near genes chr3R 29760973 intergenic not near genes chr3R 29761606 intergenic not near genes chr3R_14_29760001 chr3R_29760001 RAL-42 1706 chr3R 29882004 29882050 chr3R 29891181 29891227 roo 10 9177 1.0 4.5 2.8 2.6 9223 chr3R 29882004 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891227 intron CG31038 + chr3R_10_29885001 chr3R_29885001 RAL-42 1707 chr3R 29923609 29923655 chr3R 29925437 29925482 13 1827 19.5 32.0 25.8 0.5 1873 chr3R 29923609 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924546 exon Jon99Cii - chr3R 29925482 exon Jon99Ci - chr3R_13_29920001 chr3R_29920001 RAL-42 1708 chr3R 29948082 29948129 chr3R 29948601 29948648 17 519 6.0 5.0 5.5 2.6 566 chr3R 29948082 exon CG15523 + chr3R 29948365 intergenic CG15523 + chr3R 29948648 intergenic CG15523 + chr3R_17_29945001 chr3R_29945001 RAL-42 1709 chr3R 29963471 29963500 chr3R 29963593 29963622 8 122 1.5 1.5 1.5 3.2 151 chr3R 29963471 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963622 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-42 1710 chr3R 30013672 30013701 chr3R 30013762 30013804 6 94 0.5 3.0 1.8 2.1 132 chr3R 30013672 intron CG7920 - chr3R 30013738 intron CG7920 - chr3R 30013804 intron CG7920 - chr3R_6_30010001 chr3R_30010001 RAL-42 1711 chr3R 30032141 30032160 chr3R 30032240 30032259 9 98 11.5 5.0 8.2 1.0 118 chr3R 30032141 intron Axn + chr3R 30032200 intron Axn + chr3R 30032259 intron Axn + chr3R_9_30030001 chr3R_30030001 RAL-42 1712 chr3R 30084840 30084885 chr3R 30086326 30086341 hobo 5 1481 0.5 0.5 0.5 3.3 1501 chr3R 30084840 intron sima + chr3R 30085590 intron sima + chr3R 30086341 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-42 1713 chr3R 30171810 30171817 chr3R 30171914 30171946 5 111 18.5 28.0 23.2 0.2 136 chr3R 30171810 3` UTR Mlc2 - chr3R 30171878 3` UTR Mlc2 - chr3R 30171946 3` UTR Mlc2 - chr3R_5_30170001 chr3R_30170001 RAL-42 1714 chr3R 30183197 30183235 chr3R 30183325 30183364 11 129 4.5 7.0 5.8 1.6 167 chr3R 30183197 intergenic not near genes chr3R 30183280 intergenic not near genes chr3R 30183364 intergenic CR44262 - chr3R_11_30180001 chr3R_30180001 RAL-42 1715 chr3R 30238748 30238791 chr3R 30239932 30239975 1360 13 1184 3.5 6.5 5.0 2.2 1227 chr3R 30238748 intergenic not near genes chr3R 30239362 intergenic not near genes chr3R 30239975 intergenic not near genes chr3R_13_30235001 chr3R_30235001 RAL-42 1716 chr3R 30246215 30246328 chr3R 30246309 30246427 4 97 0.0 0.0 0.0 4.0 212 chr3R 30246215 intron CG9733 - chr3R 30246321 intron CG9733 - chr3R 30246427 intron CG9733 - chr3R_4_30245001 chr3R_30245001 RAL-42 1717 chr3R 30272507 30272542 chr3R 30272616 30272651 16 107 1.5 6.5 4.0 3.2 144 chr3R 30272507 intergenic not near genes chr3R 30272579 intergenic not near genes chr3R 30272651 intergenic not near genes chr3R_16_30270001 chr3R_30270001 RAL-42 1718 chr3R 30317328 30317352 chr3R 30324940 30324964 roo 4 7607 0.0 3.5 1.8 1.4 7636 chr3R 30317328 intron hdc + chr3R 30321146 intron hdc + chr3R 30324964 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-42 1719 chr3R 30375523 30375566 chr3R 30383168 30383211 412 16 7645 6.5 5.5 6.0 2.3 7688 chr3R 30375523 intergenic not near genes chr3R 30379367 intergenic not near genes chr3R 30383211 intergenic not near genes chr3R_16_30375001 chr3R_30375001 RAL-42 1720 chr3R 30396197 30396242 chr3R 30404483 30404528 roo 16 8285 7.5 6.0 6.8 2.1 8331 chr3R 30396197 intergenic not near genes chr3R 30400362 intergenic not near genes chr3R 30404528 5` UTR CR45570 + chr3R_16_30400001 chr3R_30400001 RAL-42 1721 chr3R 30480472 30480505 chr3R 30482940 30482993 jockey 11 2481 1.5 5.5 3.5 2.4 2521 chr3R 30480472 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482993 intron PH4alphaEFB + chr3R_11_30480001 chr3R_30480001 RAL-42 1722 chr3R 30528273 30528315 chr3R 30528461 30528486 8 184 2.5 6.0 4.2 1.5 213 chr3R 30528273 intergenic CR45552 - chr3R 30528380 3` UTR CR45552 - chr3R 30528486 3` UTR CR45552 - chr3R_8_30525001 chr3R_30525001 RAL-42 1723 chr3R 30571684 30571715 chr3R 30571784 30571815 18 100 0.0 2.5 1.2 8.2 131 chr3R 30571684 intron tmod + chr3R 30571750 intron tmod + chr3R 30571815 exon tmod + chr3R_18_30570001 chr3R_30570001 RAL-42 1724 chr3R 30679499 30679551 chr3R 30686986 30687040 blood 7 7486 1.5 2.0 1.8 2.5 7541 chr3R 30679499 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687040 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-42 1725 chr3R 30818794 30818833 chr3R 30820379 30820418 1360 14 1583 11.5 10.0 10.8 1.2 1624 chr3R 30818794 intron cindr + chr3R 30819606 intron cindr + chr3R 30820418 intron cindr + chr3R_14_30815001 chr3R_30815001 RAL-42 1726 chr3R 30859391 30859426 chr3R 30859489 30859524 4 98 3.5 2.5 3.0 1.0 133 chr3R 30859391 intergenic not near genes chr3R 30859458 intergenic not near genes chr3R 30859524 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-42 1727 chr3R 30967278 30967294 chr3R 30967379 30967395 5 101 0.5 3.0 1.8 1.8 117 chr3R 30967278 intergenic not near genes chr3R 30967336 intergenic not near genes chr3R 30967395 intergenic not near genes chr3R_5_30965001 chr3R_30965001 RAL-42 1728 chr3R 30973113 30973158 chr3R 30973294 30973339 11 181 3.0 3.5 3.2 2.6 226 chr3R 30973113 intron 5-HT7 - chr3R 30973226 intron 5-HT7 - chr3R 30973339 intron 5-HT7 - chr3R_11_30970001 chr3R_30970001 RAL-42 1729 chr3R 31024170 31024194 chr3R 31024267 31024290 5 97 2.5 4.5 3.5 1.1 120 chr3R 31024170 intergenic not near genes chr3R 31024230 intergenic not near genes chr3R 31024290 intergenic not near genes chr3R_5_31020001 chr3R_31020001 RAL-42 1730 chr3R 31042089 31042143 chr3R 31042196 31042250 8 107 3.5 6.5 5.0 1.3 161 chr3R 31042089 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042250 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-42 1731 chr3R 31069627 31069675 chr3R 31069741 31069790 19 113 2.5 2.0 2.2 5.9 163 chr3R 31069627 intron Sox100B + chr3R 31069708 intron Sox100B + chr3R 31069790 intron Sox100B + chr3R_19_31065001 chr3R_31065001 RAL-42 1732 chr3R 31074220 31074259 chr3R 31081830 31081877 springer 13 7617 3.0 6.0 4.5 2.4 7657 chr3R 31074220 intron Sox100B + chr3R 31078048 intron Sox100B + chr3R 31081877 intron Sox100B + chr3R_13_31075001 chr3R_31075001 RAL-42 1733 chr3R 31090671 31090710 chr3R 31090775 31090814 12 103 5.0 3.5 4.2 2.3 143 chr3R 31090671 intergenic CG11317 - chr3R 31090742 3` UTR CG11317 - chr3R 31090814 3` UTR CG11317 - chr3R_12_31090001 chr3R_31090001 RAL-42 1734 chr3R 31109743 31109793 chr3R 31109840 31109859 4 89 1.5 0.0 0.8 2.2 116 chr3R 31109743 intergenic not near genes chr3R 31109801 intergenic not near genes chr3R 31109859 intergenic not near genes chr3R_4_31105001 chr3R_31105001 RAL-42 1735 chr3R 31187962 31187989 chr3R 31188181 31188207 7 218 5.5 1.0 3.2 1.7 245 chr3R 31187962 intron mesh - chr3R 31188084 intron mesh - chr3R 31188207 intron mesh - chr3R_7_31185001 chr3R_31185001 RAL-42 1736 chr3R 31412692 31412740 chr3R 31412805 31412853 13 112 5.0 4.0 4.5 2.4 161 chr3R 31412692 intron Gprk2 + chr3R 31412772 intron Gprk2 + chr3R 31412853 intron Gprk2 + chr3R_13_31410001 chr3R_31410001 RAL-42 1737 chr3R 31413075 31413106 chr3R 31418295 31418326 copia 5 5213 1.5 0.0 0.8 2.8 5251 chr3R 31413075 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418326 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-42 1738 chr3R 31426870 31426900 chr3R 31426977 31427012 7 111 1.5 2.0 1.8 2.5 142 chr3R 31426870 intron Gprk2 + chr3R 31426941 intron Gprk2 + chr3R 31427012 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-42 1739 chr3R 31435342 31435391 chr3R 31435514 31435563 15 171 5.0 0.0 2.5 4.3 221 chr3R 31435342 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435563 intron Gprk2 + chr3R_15_31435001 chr3R_31435001 RAL-42 1740 chr3R 31670586 31670628 chr3R 31670700 31670742 21 114 5.5 5.0 5.2 3.4 156 chr3R 31670586 intron CG1815 + chr3R 31670664 intron CG1815 + chr3R 31670742 intron CG1815 + chr3R_21_31670001 chr3R_31670001 RAL-42 1741 chr3R 31691510 31691552 chr3R 31696296 31696315 Doc 6 4778 2.5 3.0 2.8 1.6 4805 chr3R 31691510 intergenic not near genes chr3R 31693912 intergenic not near genes chr3R 31696315 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-42 1742 chr3R 31774852 31774894 chr3R 31775016 31775059 13 165 8.0 6.5 7.2 1.6 207 chr3R 31774852 3` UTR sip3 + chr3R 31774956 3` UTR sip3 + chr3R 31775059 3` UTR,3` UTR sip3 +,CG2126 - chr3R_13_31770001 chr3R_31770001 RAL-42 1743 chr3R 31808600 31808645 chr3R 31808689 31808709 16 91 5.5 6.5 6.0 2.3 109 chr3R 31808600 intron CG11576 - chr3R 31808654 intron CG11576 - chr3R 31808709 intron CG11576 - chr3R_16_31805001 chr3R_31805001 RAL-42 1744 chr3R 31841755 31841792 chr3R 31841879 31841916 14 123 7.5 3.0 5.2 2.3 161 chr3R 31841755 exon RhoGAP100F + chr3R 31841836 3` UTR RhoGAP100F + chr3R 31841916 3` UTR RhoGAP100F + chr3R_14_31840001 chr3R_31840001 RAL-42 1745 chr3R 31926346 31926401 chr3R 31926442 31926477 10 96 1.5 2.5 2.0 3.3 131 chr3R 31926346 intron heph - chr3R 31926412 intron heph - chr3R 31926477 intron heph - chr3R_10_31925001 chr3R_31925001 RAL-42 1746 chr3R 31930885 31931176 chr3R 31931016 31931279 5 119 9.0 2.5 5.8 0.7 394 chr3R 31930885 intron heph - chr3R 31931082 intron heph - chr3R 31931279 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-42 1747 chr3R 31931188 31931215 chr3R 31931291 31931318 9 103 6.5 5.5 6.0 1.3 130 chr3R 31931188 intron heph - chr3R 31931253 intron heph - chr3R 31931318 intron heph - chr3R_9_31930001 chr3R_31930001 RAL-42 1748 chr3R 31997972 31998017 chr3R 32005462 32005506 blood 5 7489 2.5 1.5 2.0 1.7 7534 chr3R 31997972 intron heph - chr3R 32001739 intron heph - chr3R 32005506 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-42 1749 chr3R 32009997 32010015 chr3R 32010113 32010160 4 138 1.5 0.5 1.0 2.0 163 chr3R 32009997 intron heph - chr3R 32010078 intron heph - chr3R 32010160 intron heph - chr3R_4_32010001 chr3R_32010001 RAL-42 1750 chr4 264957 264998 chr4 265180 265221 7 223 4.5 2.5 3.5 1.6 264 chr4 264957 exon RhoGAP102A + chr4 265089 3` UTR RhoGAP102A + chr4 265221 3` UTR RhoGAP102A + chr4_7_265001 chr4_265001 RAL-42 1751 chr4 409206 409241 chr4 409309 409344 5 103 1.0 0.5 0.8 2.8 138 chr4 409206 intergenic not near genes chr4 409275 intergenic not near genes chr4 409344 intergenic not near genes chr4_5_405001 chr4_405001 RAL-42 1752 chr4 852899 852928 chr4 853283 853312 4 383 1.5 2.0 1.8 1.4 413 chr4 852899 intergenic not near genes chr4 853106 intergenic not near genes chr4 853312 intergenic CG11148 - chr4_4_850001 chr4_850001 RAL-42 1753 chrX 318453 318486 chrX 323558 323592 flea 4 5106 4.0 0.5 2.2 1.2 5139 chrX 318453 intron,intron CG3777 +,CG32816 - chrX 321022 intron,intron CG3777 +,CG32816 - chrX 323592 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-42 1754 chrX 428414 428451 chrX 434619 434656 3S18 5 6205 1.5 2.5 2.0 1.7 6242 chrX 428414 intron CG32816 - chrX 431535 intron CG32816 - chrX 434656 intron CG32816 - chrX_5_430001 chrX_430001 RAL-42 1755 chrX 551403 551446 chrX 558983 558988 412 6 7572 5.0 2.5 3.8 1.2 7585 chrX 551403 intron Appl + chrX 555196 intron Appl + chrX 558988 intron Appl + chrX_6_555001 chrX_555001 RAL-42 1756 chrX 812250 812289 chrX 817901 817940 297 9 5650 4.0 5.5 4.8 1.6 5690 chrX 812250 intron CG43867 - chrX 815095 intron CG43867 - chrX 817940 intron CG43867 - chrX_9_815001 chrX_815001 RAL-42 1757 chrX 827601 827633 chrX 835398 835440 roo 6 7809 2.0 5.0 3.5 1.3 7839 chrX 827601 intron CG43867 - chrX 831520 intron CG43867 - chrX 835440 intron CG43867 - chrX_6_830001 chrX_830001 RAL-42 1758 chrX 906699 906730 chrX 908493 908539 S-element 5 1806 4.0 12.0 8.0 0.6 1840 chrX 906699 intron CG43867 - chrX 907619 intron CG43867 - chrX 908539 intron CG43867 - chrX_5_905001 chrX_905001 RAL-42 1759 chrX 1218481 1218486 chrX 1218595 1218600 4 114 7.0 13.5 10.2 0.4 119 chrX 1218481 3` UTR CG3638 - chrX 1218540 3` UTR CG3638 - chrX 1218600 3` UTR CG3638 - chrX_4_1215001 chrX_1215001 RAL-42 1760 chrX 1253715 1253764 chrX 1253817 1253866 6 102 2.0 3.0 2.5 1.7 151 chrX 1253715 intron Atf3 - chrX 1253790 intron Atf3 - chrX 1253866 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-42 1761 chrX 1357763 1357805 chrX 1367953 1367994 Doc 7 10190 4.5 4.0 4.2 1.3 10231 chrX 1357763 intergenic png - chrX 1362878 intergenic not near genes chrX 1367994 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-42 1762 chrX 1428584 1428623 chrX 1428690 1428729 11 103 5.0 5.0 5.0 1.8 145 chrX 1428584 intron futsch + chrX 1428656 intron futsch + chrX 1428729 intron futsch + chrX_11_1425001 chrX_1425001 RAL-42 1763 chrX 1674836 1674850 chrX 1674931 1674936 6 94 9.5 0.0 4.8 1.0 100 chrX 1674836 3` UTR CG32809 - chrX 1674886 3` UTR CG32809 - chrX 1674936 3` UTR CG32809 - chrX_6_1670001 chrX_1670001 RAL-42 1764 chrX 1830626 1830640 chrX 1830798 1830819 5 178 4.0 2.0 3.0 1.2 193 chrX 1830626 intron CG42666 + chrX 1830722 intron CG42666 + chrX 1830819 intron CG42666 + chrX_5_1830001 chrX_1830001 RAL-42 1765 chrX 1845716 1845753 chrX 1846301 1846347 12 591 5.0 4.5 4.8 2.1 631 chrX 1845716 intron CG42666 + chrX 1846032 intron CG42666 + chrX 1846347 intron CG42666 + chrX_12_1845001 chrX_1845001 RAL-42 1766 chrX 1930517 1930561 chrX 1938108 1938151 opus 13 7591 6.5 7.5 7.0 1.6 7634 chrX 1930517 3` UTR CG11596 + chrX 1934334 intergenic not near genes chrX 1938151 3` UTR CG3857 - chrX_13_1930001 chrX_1930001 RAL-42 1767 chrX 2099123 2099164 chrX 2099297 2099338 14 173 5.0 6.5 5.8 2.1 215 chrX 2099123 intron csw + chrX 2099230 intron csw + chrX 2099338 intron csw + chrX_14_2095001 chrX_2095001 RAL-42 1768 chrX 2146638 2146680 chrX 2146750 2146793 6 111 2.5 0.0 1.2 2.7 155 chrX 2146638 intron Pgd + chrX 2146716 intron Pgd + chrX 2146793 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-42 1769 chrX 2164378 2164389 chrX 2164472 2164472 5 98 1.5 4.5 3.0 1.2 94 chrX 2164378 intron CG3630 + chrX 2164425 intron CG3630 + chrX 2164472 intron CG3630 + chrX_5_2160001 chrX_2160001 RAL-42 1770 chrX 2578802 2578840 chrX 2578908 2578949 6 110 5.5 7.5 6.5 0.8 147 chrX 2578802 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578949 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-42 1771 chrX 2610373 2610381 chrX 2617503 2617515 HMS-Beagle 4 7134 5.5 5.0 5.2 0.6 7142 chrX 2610373 intergenic CG8636 - chrX 2613944 intergenic not near genes chrX 2617515 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-42 1772 chrX 2760006 2760059 chrX 2760319 2760371 5 312 3.0 3.5 3.2 1.2 365 chrX 2760006 intron kirre + chrX 2760188 intron kirre + chrX 2760371 intron kirre + chrX_5_2760001 chrX_2760001 RAL-42 1773 chrX 2803485 2803515 chrX 2803648 2803678 4 160 3.5 0.5 2.0 1.3 193 chrX 2803485 intron kirre + chrX 2803582 intron kirre + chrX 2803678 intron kirre + chrX_4_2800001 chrX_2800001 RAL-42 1774 chrX 2818821 2818851 chrX 2818942 2818972 6 120 7.0 3.0 5.0 1.0 151 chrX 2818821 intron kirre + chrX 2818896 intron kirre + chrX 2818972 intron kirre + chrX_6_2815001 chrX_2815001 RAL-42 1775 chrX 2844882 2844914 chrX 2852312 2852344 mdg1 8 7430 0.5 1.0 0.8 4.4 7462 chrX 2844882 intron kirre + chrX 2848613 intron kirre + chrX 2852344 intron kirre + chrX_8_2845001 chrX_2845001 RAL-42 1776 chrX 2888105 2888141 chrX 2888191 2888221 4 89 3.0 1.5 2.2 1.2 116 chrX 2888105 intron kirre + chrX 2888163 intron kirre + chrX 2888221 intron kirre + chrX_4_2885001 chrX_2885001 RAL-42 1777 chrX 2917073 2917120 chrX 2917173 2917220 17 100 3.5 2.0 2.8 4.5 147 chrX 2917073 intron kirre + chrX 2917146 intron kirre + chrX 2917220 intron kirre + chrX_17_2915001 chrX_2915001 RAL-42 1778 chrX 2959788 2959826 chrX 2959877 2959883 9 86 3.0 2.0 2.5 2.6 95 chrX 2959788 intron,intron kirre +,rst - chrX 2959836 intron,intron kirre +,rst - chrX 2959883 intron,intron kirre +,rst - chrX_9_2955001 chrX_2955001 RAL-42 1779 chrX 3067916 3067960 chrX 3068025 3068069 11 106 5.0 1.5 3.2 2.6 153 chrX 3067916 intron kirre + chrX 3067992 intron kirre + chrX 3068069 intron kirre + chrX_11_3065001 chrX_3065001 RAL-42 1780 chrX 3206489 3206505 chrX 3206588 3206604 5 99 0.5 13.0 6.8 0.6 115 chrX 3206489 intron dnc + chrX 3206546 intron dnc + chrX 3206604 intron dnc + chrX_5_3205001 chrX_3205001 RAL-42 1781 chrX 3459964 3459995 chrX 3460061 3460092 7 96 4.5 2.0 3.2 1.7 128 chrX 3459964 intron,intron CR44999 +,CG16782 - chrX 3460028 intron,5` UTR CR44999 +,CG16782 - chrX 3460092 intron,5` UTR CR44999 +,CG16782 - chrX_7_3460001 chrX_3460001 RAL-42 1782 chrX 3493072 3493102 chrX 3502251 3502281 roo 6 9179 6.5 2.0 4.2 1.2 9209 chrX 3493072 intron,intron CR44999 +,Gas8 - chrX 3497676 intron,intron CR44999 +,Gas8 - chrX 3502281 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-42 1783 chrX 3626124 3626140 chrX 3626229 3626245 5 105 0.0 0.0 0.0 5.0 121 chrX 3626124 intron AstA-R1 + chrX 3626184 intron AstA-R1 + chrX 3626245 intron AstA-R1 + chrX_5_3625001 chrX_3625001 RAL-42 1784 chrX 3840238 3840254 chrX 3840339 3840355 5 96 3.0 0.0 1.5 2.0 117 chrX 3840238 intron ec + chrX 3840296 intron ec + chrX 3840355 intron ec + chrX_5_3840001 chrX_3840001 RAL-42 1785 chrX 3842303 3842344 chrX 3842564 3842605 pogo 13 261 3.0 6.0 4.5 2.4 302 chrX 3842303 intron ec + chrX 3842454 intron ec + chrX 3842605 intron ec + chrX_13_3840001 chrX_3840001 RAL-42 1786 chrX 3866085 3866121 chrX 3866183 3866219 8 95 4.0 0.0 2.0 2.7 134 chrX 3866085 intron yin - chrX 3866152 intron yin - chrX 3866219 intron yin - chrX_8_3865001 chrX_3865001 RAL-42 1787 chrX 3880475 3880486 chrX 3880581 3880592 5 106 3.5 8.0 5.8 0.7 117 chrX 3880475 intergenic VhaAC39-1 + chrX 3880534 intergenic VhaAC39-1 + chrX 3880592 intergenic VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-42 1788 chrX 3986854 3986892 chrX 3994499 3994545 412 6 7647 2.0 3.5 2.8 1.6 7691 chrX 3986854 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994545 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-42 1789 chrX 4048479 4048524 chrX 4048575 4048620 9 96 2.0 2.5 2.2 2.8 141 chrX 4048479 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048620 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-42 1790 chrX 4101857 4101894 chrX 4101956 4101993 4 99 1.5 3.5 2.5 1.1 136 chrX 4101857 exon CG15375 + chrX 4101925 exon CG15375 + chrX 4101993 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-42 1791 chrX 4132649 4132685 chrX 4132837 4132873 10 187 6.5 5.5 6.0 1.4 224 chrX 4132649 3` UTR GlcAT-I + chrX 4132761 3` UTR GlcAT-I + chrX 4132873 intergenic Fas2 -,GlcAT-I + chrX_10_4130001 chrX_4130001 RAL-42 1792 chrX 4157873 4157906 chrX 4164928 4164961 297 6 7055 4.5 4.0 4.2 1.2 7088 chrX 4157873 intron Fas2 - chrX 4161417 intron Fas2 - chrX 4164961 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-42 1793 chrX 4166426 4166445 chrX 4166814 4166817 4 388 3.0 5.5 4.2 0.8 391 chrX 4166426 intron Fas2 - chrX 4166622 intron Fas2 - chrX 4166817 intron Fas2 - chrX_4_4165001 chrX_4165001 RAL-42 1794 chrX 4389358 4389380 chrX 12946233 12946235 4 8556860 14.5 17.0 15.8 0.2 8556877 chrX 4389358 intron CR32773 - chrX 8667796 intergenic not near genes chrX 12946235 3` UTR fne + chrX_4_8665001 chrX_8665001 RAL-42 1795 chrX 4396970 4397004 chrX 4397064 4397109 13 102 5.0 2.5 3.8 2.7 139 chrX 4396970 intron CR32773 - chrX 4397040 intron CR32773 - chrX 4397109 intron CR32773 - chrX_13_4395001 chrX_4395001 RAL-42 1796 chrX 4525738 4525769 chrX 4525846 4525881 11 110 3.5 3.5 3.5 2.4 143 chrX 4525738 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525881 intron CR32773 - chrX_11_4525001 chrX_4525001 RAL-42 1797 chrX 4744153 4744174 chrX 4744271 4744292 5 118 1.0 0.0 0.5 3.3 139 chrX 4744153 intergenic not near genes chrX 4744222 intergenic not near genes chrX 4744292 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-42 1798 chrX 4757363 4757410 chrX 4757462 4757508 7 99 0.0 3.0 1.5 2.8 145 chrX 4757363 intergenic not near genes chrX 4757436 intergenic not near genes chrX 4757508 intergenic not near genes chrX_7_4755001 chrX_4755001 RAL-42 1799 chrX 4763239 4763259 chrX 4763747 4763767 Stalker4 5 508 1.5 2.5 2.0 1.7 528 chrX 4763239 intergenic not near genes chrX 4763503 intergenic not near genes chrX 4763767 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-42 1800 chrX 4792367 4792391 chrX 4792820 4792844 jockey 4 449 5.0 4.5 4.8 0.7 477 chrX 4792367 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792844 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-42 1801 chrX 4844496 4844529 chrX 4844626 4844659 7 130 0.0 0.0 0.0 7.0 163 chrX 4844496 intron CG42594 + chrX 4844578 intron CG42594 + chrX 4844659 intron CG42594 + chrX_7_4840001 chrX_4840001 RAL-42 1802 chrX 4898244 4898283 chrX 4898342 4898368 4 94 0.0 1.5 0.8 2.2 124 chrX 4898244 intron CG42594 + chrX 4898306 intron CG42594 + chrX 4898368 intron CG42594 + chrX_4_4895001 chrX_4895001 RAL-42 1803 chrX 4931339 4931372 chrX 4931453 4931483 4 110 13.0 13.5 13.2 0.3 144 chrX 4931339 intron CG44774 - chrX 4931411 intron CG44774 - chrX 4931483 intron CG44774 - chrX_4_4930001 chrX_4930001 RAL-42 1804 chrX 5096260 5096302 chrX 5103845 5103887 springer 13 7585 1.0 4.5 2.8 3.4 7627 chrX 5096260 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103887 intron,intron CG15465 +,rg + chrX_13_5100001 chrX_5100001 RAL-42 1805 chrX 5122801 5122850 chrX 5123050 5123099 5 248 1.0 2.0 1.5 2.0 298 chrX 5122801 intron,intron CG15465 +,rg + chrX 5122950 intron,intron CG15465 +,rg + chrX 5123099 intron,intron CG15465 +,rg + chrX_5_5120001 chrX_5120001 RAL-42 1806 chrX 5134795 5134825 chrX 5134916 5134946 5 121 1.5 1.0 1.2 2.3 151 chrX 5134795 intron,intron CG15465 +,rg + chrX 5134870 intron,intron CG15465 +,rg + chrX 5134946 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-42 1807 chrX 5227518 5227571 chrX 5227649 5227702 6 130 2.5 3.0 2.8 1.6 184 chrX 5227518 intron,intron CG15465 +,rg + chrX 5227610 intron,intron CG15465 +,rg + chrX 5227702 intron,intron CG15465 +,rg + chrX_6_5225001 chrX_5225001 RAL-42 1808 chrX 5272820 5272848 chrX 5272921 5272955 5 106 3.5 5.0 4.2 1.0 135 chrX 5272820 intergenic not near genes chrX 5272888 intergenic not near genes chrX 5272955 intergenic not near genes chrX_5_5270001 chrX_5270001 RAL-42 1809 chrX 5345377 5345429 chrX 5345508 5345560 12 129 1.0 5.5 3.2 2.9 183 chrX 5345377 intron SK + chrX 5345468 intron SK + chrX 5345560 intron SK + chrX_12_5345001 chrX_5345001 RAL-42 1810 chrX 5345090 5345117 chrX 5348114 5348127 4 3018 22.5 7.0 14.8 0.3 3037 chrX 5345090 intron SK + chrX 5346608 intron SK + chrX 5348127 intron SK + chrX_4_5345001 chrX_5345001 RAL-42 1811 chrX 5349257 5349307 chrX 5349354 5349404 9 96 3.5 4.5 4.0 1.8 147 chrX 5349257 intron SK + chrX 5349330 intron SK + chrX 5349404 intron SK + chrX_9_5345001 chrX_5345001 RAL-42 1812 chrX 5441981 5442019 chrX 5442106 5442133 6 125 0.5 4.5 2.5 1.7 152 chrX 5441981 intergenic not near genes chrX 5442057 intergenic not near genes chrX 5442133 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-42 1813 chrX 5524827 5524869 chrX 5528706 5528736 412 5 3879 2.0 2.5 2.2 1.6 3909 chrX 5524827 intergenic snoRNA:Psi28S-3342 - chrX 5526782 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_5_5525001 chrX_5525001 RAL-42 1814 chrX 5883792 5883835 chrX 5884053 5884096 pogo 7 259 3.0 3.0 3.0 1.8 304 chrX 5883792 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884096 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-42 1815 chrX 6003285 6003306 chrX 6003386 6003407 8 101 3.5 7.0 5.2 1.3 122 chrX 6003285 intron CR44498 + chrX 6003346 intron CR44498 + chrX 6003407 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-42 1816 chrX 6100479 6100492 chrX 6100622 6100635 6 143 7.5 1.0 4.2 1.2 156 chrX 6100479 intron Nep1 + chrX 6100557 intron Nep1 + chrX 6100635 intron Nep1 + chrX_6_6100001 chrX_6100001 RAL-42 1817 chrX 6118690 6118718 chrX 6118791 6118820 4 102 2.5 1.0 1.8 1.4 130 chrX 6118690 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118820 intron Ca-alpha1T - chrX_4_6115001 chrX_6115001 RAL-42 1818 chrX 6171571 6171615 chrX 6179018 6179068 Quasimodo 17 7452 3.5 2.5 3.0 4.2 7497 chrX 6171571 intron Ca-alpha1T - chrX 6175320 intron Ca-alpha1T - chrX 6179068 intron Ca-alpha1T - chrX_17_6175001 chrX_6175001 RAL-42 1819 chrX 6413525 6413564 chrX 6413967 6414005 4 445 5.0 3.5 4.2 0.8 480 chrX 6413525 intergenic not near genes chrX 6413765 intergenic not near genes chrX 6414005 intergenic not near genes chrX_4_6410001 chrX_6410001 RAL-42 1820 chrX 6514905 6514923 chrX 6514980 6515013 6 94 0.0 1.5 0.8 3.3 108 chrX 6514905 intron CG42340 - chrX 6514959 intron CG42340 - chrX 6515013 intron CG42340 - chrX_6_6510001 chrX_6510001 RAL-42 1821 chrX 6539909 6539927 chrX 6540031 6540039 7 121 6.0 4.5 5.2 1.1 130 chrX 6539909 intergenic not near genes chrX 6539974 intergenic not near genes chrX 6540039 intergenic not near genes chrX_7_6535001 chrX_6535001 RAL-42 1822 chrX 6562816 6562825 chrX 6571312 6571327 Tirant 5 8497 6.0 8.5 7.2 0.6 8511 chrX 6562816 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571327 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-42 1823 chrX 6562830 6562843 chrX 6571307 6571345 Tirant 4 8492 3.0 7.5 5.2 0.6 8515 chrX 6562830 intron CG34417 + chrX 6567088 intron CG34417 + chrX 6571345 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-42 1824 chrX 6591835 6591847 chrX 6591940 6591952 5 105 5.0 0.0 2.5 1.4 117 chrX 6591835 intron Pat1 + chrX 6591894 intron Pat1 + chrX 6591952 intron Pat1 + chrX_5_6590001 chrX_6590001 RAL-42 1825 chrX 6884770 6884793 chrX 6884936 6884959 7 165 3.0 4.0 3.5 1.6 189 chrX 6884770 intergenic not near genes chrX 6884864 intergenic not near genes chrX 6884959 intergenic not near genes chrX_7_6880001 chrX_6880001 RAL-42 1826 chrX 6989481 6989532 chrX 6989588 6989639 4 106 1.5 2.0 1.8 1.4 158 chrX 6989481 intron ogre - chrX 6989560 intron ogre - chrX 6989639 intron ogre - chrX_4_6985001 chrX_6985001 RAL-42 1827 chrX 7023600 7023630 chrX 7031001 7031039 Tabor 4 7408 5.0 3.0 4.0 0.8 7439 chrX 7023600 intron CG12541 - chrX 7027320 intron CG12541 - chrX 7031039 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-42 1828 chrX 7125231 7125261 chrX 7134410 7134440 roo 6 9179 0.0 3.5 1.8 2.1 9209 chrX 7125231 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134440 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-42 1829 chrX 7259183 7259206 chrX 7259315 7259338 5 132 1.5 3.5 2.5 1.4 155 chrX 7259183 intron CR44357 - chrX 7259260 intron CR44357 - chrX 7259338 intron CR44357 - chrX_5_7255001 chrX_7255001 RAL-42 1830 chrX 7345178 7345199 chrX 7345290 7345306 5 108 0.5 0.5 0.5 3.3 128 chrX 7345178 intron,intron CR44357 -,CG1677 - chrX 7345242 intron,intron CR44357 -,CG1677 - chrX 7345306 intron,intron CR44357 -,CG1677 - chrX_5_7345001 chrX_7345001 RAL-42 1831 chrX 7702892 7702919 chrX 7703351 7703378 jockey 9 458 8.0 4.5 6.2 1.2 486 chrX 7702892 intron CHES-1-like - chrX 7703135 intron CHES-1-like - chrX 7703378 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-42 1832 chrX 7737139 7737187 chrX 7737241 7737289 8 102 2.5 2.5 2.5 2.3 150 chrX 7737139 5` UTR Tom40 + chrX 7737214 intron Tom40 + chrX 7737289 intron Tom40 + chrX_8_7735001 chrX_7735001 RAL-42 1833 chrX 7832429 7832464 chrX 7832538 7832571 6 108 3.5 3.0 3.2 1.4 142 chrX 7832429 intron CG1402 + chrX 7832500 intron CG1402 + chrX 7832571 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-42 1834 chrX 7845715 7845758 chrX 7847226 7847259 hopper2 10 1510 0.5 6.0 3.2 2.4 1544 chrX 7845715 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847259 intergenic not near genes chrX_10_7845001 chrX_7845001 RAL-42 1835 chrX 8031420 8031453 chrX 8035749 8035782 Juan 6 4329 4.0 9.0 6.5 0.8 4362 chrX 8031420 intergenic not near genes chrX 8033601 intergenic not near genes chrX 8035782 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-42 1836 chrX 8063719 8063766 chrX 8063838 8063869 5 112 3.5 4.0 3.8 1.0 150 chrX 8063719 intron mys + chrX 8063794 intron mys + chrX 8063869 5` UTR mys + chrX_5_8060001 chrX_8060001 RAL-42 1837 chrX 8085565 8085603 chrX 8085671 8085709 8 106 5.0 6.5 5.8 1.2 144 chrX 8085565 intron,5` UTR CG2256 -,CR45535 + chrX 8085637 intron,5` UTR CG2256 -,CR45535 + chrX 8085709 intron,5` UTR CG2256 -,CR45535 + chrX_8_8085001 chrX_8085001 RAL-42 1838 chrX 8092273 8092322 chrX 8092378 8092427 15 105 1.5 3.5 2.5 4.3 154 chrX 8092273 intron Ubc-E2H - chrX 8092350 intron Ubc-E2H - chrX 8092427 intron Ubc-E2H - chrX_15_8090001 chrX_8090001 RAL-42 1839 chrX 8190446 8190474 chrX 8190579 8190607 4 132 2.5 1.0 1.8 1.4 161 chrX 8190446 intron sdt + chrX 8190526 intron sdt + chrX 8190607 intron sdt + chrX_4_8190001 chrX_8190001 RAL-42 1840 chrX 8500917 8500947 chrX 8501101 8501131 5 184 6.0 0.0 3.0 1.2 214 chrX 8500917 intron CG33181 + chrX 8501024 intron CG33181 + chrX 8501131 intron CG33181 + chrX_5_8500001 chrX_8500001 RAL-42 1841 chrX 8670281 8670321 chrX 8670388 8670429 7 108 6.0 5.5 5.8 1.0 148 chrX 8670281 intergenic not near genes chrX 8670355 intergenic not near genes chrX 8670429 intergenic not near genes chrX_7_8670001 chrX_8670001 RAL-42 1842 chrX 8772231 8772243 chrX 8772330 8772339 7 98 4.0 1.0 2.5 2.0 108 chrX 8772231 intron Lim1 - chrX 8772285 intron Lim1 - chrX 8772339 intron Lim1 - chrX_7_8770001 chrX_8770001 RAL-42 1843 chrX 8922332 8922352 chrX 8922786 8922792 jockey 8 452 0.5 3.5 2.0 2.7 460 chrX 8922332 intron rdgA + chrX 8922562 intron rdgA + chrX 8922792 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-42 1844 chrX 9129467 9129501 chrX 9129573 9129607 6 100 3.0 3.5 3.2 1.4 140 chrX 9129467 intron fend - chrX 9129537 intron fend - chrX 9129607 intron fend - chrX_6_9125001 chrX_9125001 RAL-42 1845 chrX 9218061 9218077 chrX 9218172 9218188 4 111 11.5 0.0 5.8 0.6 127 chrX 9218061 3` UTR t - chrX 9218124 3` UTR t - chrX 9218188 3` UTR t - chrX_4_9215001 chrX_9215001 RAL-42 1846 chrX 9426307 9426362 chrX 9426776 9426831 7 469 1.0 1.0 1.0 3.5 524 chrX 9426307 intron mgl - chrX 9426569 intron mgl - chrX 9426831 intron mgl - chrX_7_9425001 chrX_9425001 RAL-42 1847 chrX 9508124 9508136 chrX 9509662 9509674 jockey 5 1537 9.5 2.5 6.0 0.7 1550 chrX 9508124 intron CG32700 - chrX 9508899 intron CG32700 - chrX 9509674 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-42 1848 chrX 9508144 9508159 chrX 9509660 9509697 jockey 12 1534 6.5 2.0 4.2 2.3 1553 chrX 9508144 intron CG32700 - chrX 9508920 intron CG32700 - chrX 9509697 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-42 1849 chrX 9575784 9575804 chrX 9576120 9576148 mdg3 5 341 4.5 6.5 5.5 0.8 364 chrX 9575784 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-42 1850 chrX 9575806 9575823 chrX 9576113 9576145 mdg3 5 328 2.0 6.0 4.0 1.0 339 chrX 9575806 intron,exon CG32699 -,CG42395 - chrX 9575976 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-42 1851 chrX 9599181 9599200 chrX 9599275 9599298 7 94 2.5 5.0 3.8 1.5 117 chrX 9599181 intergenic not near genes chrX 9599240 intergenic not near genes chrX 9599298 intergenic not near genes chrX_7_9595001 chrX_9595001 RAL-42 1852 chrX 9923390 9923422 chrX 9923492 9923533 7 108 2.0 3.5 2.8 1.8 143 chrX 9923390 intergenic not near genes chrX 9923462 intergenic not near genes chrX 9923533 intergenic not near genes chrX_7_9920001 chrX_9920001 RAL-42 1853 chrX 9988501 9988516 chrX 9988625 9988640 4 124 2.5 4.0 3.2 1.0 139 chrX 9988501 intergenic not near genes chrX 9988570 intergenic not near genes chrX 9988640 intergenic not near genes chrX_4_9985001 chrX_9985001 RAL-42 1854 chrX 10138199 10138246 chrX 10145723 10145770 412 14 7524 1.0 4.5 2.8 3.7 7571 chrX 10138199 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145770 intron,intron RhoU +,CR44894 - chrX_14_10140001 chrX_10140001 RAL-42 1855 chrX 10151918 10151926 chrX 10152008 10152023 4 92 6.0 6.5 6.2 0.6 105 chrX 10151918 intron CR44894 - chrX 10151970 intron CR44894 - chrX 10152023 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-42 1856 chrX 10154264 10154304 chrX 10154360 10154369 10 93 5.5 1.0 3.2 2.4 105 chrX 10154264 intron,intron CR44894 -,CG12645 + chrX 10154316 intron,intron CR44894 -,CG12645 + chrX 10154369 intron,intron CR44894 -,CG12645 + chrX_10_10150001 chrX_10150001 RAL-42 1857 chrX 10267297 10267332 chrX 10276467 10276502 roo 13 9170 0.0 5.0 2.5 3.7 9205 chrX 10267297 3` UTR alpha-Man-I - chrX 10271900 intron alpha-Man-I - chrX 10276502 3` UTR alpha-Man-I - chrX_13_10270001 chrX_10270001 RAL-42 1858 chrX 10317535 10317581 chrX 10317633 10317679 14 98 0.0 3.0 1.5 5.6 144 chrX 10317535 intron alpha-Man-I - chrX 10317607 intron alpha-Man-I - chrX 10317679 intron alpha-Man-I - chrX_14_10315001 chrX_10315001 RAL-42 1859 chrX 10348789 10348798 chrX 10356374 10356383 springer 5 7584 8.5 4.0 6.2 0.7 7594 chrX 10348789 intergenic snoRNA:U3:9B + chrX 10352586 intergenic not near genes chrX 10356383 intergenic l(1)G0289 - chrX_5_10350001 chrX_10350001 RAL-42 1860 chrX 10348800 10348827 chrX 10356369 10356378 springer 10 7578 5.5 4.0 4.8 1.7 7578 chrX 10348800 intergenic snoRNA:U3:9B + chrX 10352589 intergenic not near genes chrX 10356378 intergenic l(1)G0289 - chrX_10_10350001 chrX_10350001 RAL-42 1861 chrX 10446671 10446714 chrX 10446773 10446816 4 101 1.0 3.0 2.0 1.3 145 chrX 10446671 intron CG32683 - chrX 10446744 intron CG32683 - chrX 10446816 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-42 1862 chrX 10453057 10453088 chrX 10453268 10453295 9 210 5.5 4.0 4.8 1.6 238 chrX 10453057 intron CG32683 - chrX 10453176 intron CG32683 - chrX 10453295 intron CG32683 - chrX_9_10450001 chrX_10450001 RAL-42 1863 chrX 10487340 10487367 chrX 10487446 10487473 6 104 2.0 4.5 3.2 1.4 133 chrX 10487340 intergenic CG32687 - chrX 10487406 intergenic CG32687 - chrX 10487473 intergenic CG32687 - chrX_6_10485001 chrX_10485001 RAL-42 1864 chrX 10685109 10685158 chrX 10685227 10685276 12 118 1.0 3.0 2.0 4.0 167 chrX 10685109 intron X11Lbeta + chrX 10685192 intron X11Lbeta + chrX 10685276 intron X11Lbeta + chrX_12_10685001 chrX_10685001 RAL-42 1865 chrX 10686030 10686073 chrX 10691187 10691230 roo 6 5157 2.5 2.0 2.2 1.9 5200 chrX 10686030 intron X11Lbeta + chrX 10688630 intron X11Lbeta + chrX 10691230 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-42 1866 chrX 10717526 10717574 chrX 10717635 10717682 17 107 5.0 2.5 3.8 3.5 156 chrX 10717526 intron CG32676 - chrX 10717604 intron CG32676 - chrX 10717682 intron CG32676 - chrX_17_10715001 chrX_10715001 RAL-42 1867 chrX 10719128 10719142 chrX 10719232 10719246 5 104 0.0 10.0 5.0 0.8 118 chrX 10719128 intron CG32676 - chrX 10719187 intron CG32676 - chrX 10719246 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-42 1868 chrX 10772664 10772676 chrX 10772767 10772779 Tirant 4 103 6.5 3.5 5.0 0.7 115 chrX 10772664 intron CG15211 + chrX 10772722 intron CG15211 + chrX 10772779 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-42 1869 chrX 11069144 11069193 chrX 11069307 11069330 11 159 1.0 0.5 0.8 6.1 186 chrX 11069144 intergenic not near genes chrX 11069237 intergenic not near genes chrX 11069330 intergenic not near genes chrX_11_11065001 chrX_11065001 RAL-42 1870 chrX 11095980 11096021 chrX 11103102 11103143 HMS-Beagle 15 7122 5.5 4.5 5.0 2.5 7163 chrX 11095980 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103143 intron CG42249 + chrX_15_11095001 chrX_11095001 RAL-42 1871 chrX 11109417 11109417 chrX 12946233 12946235 9 1836817 22.5 17.0 19.8 0.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_9_12025001 chrX_12025001 RAL-42 1872 chrX 11184245 11184278 chrX 11189325 11189374 flea 6 5092 1.5 3.0 2.2 1.9 5129 chrX 11184245 intergenic not near genes chrX 11186810 intergenic not near genes chrX 11189374 intergenic not near genes chrX_6_11185001 chrX_11185001 RAL-42 1873 chrX 11203598 11203626 chrX 11203694 11203722 9 96 1.0 5.5 3.2 2.1 124 chrX 11203598 intergenic not near genes chrX 11203660 intergenic not near genes chrX 11203722 intergenic not near genes chrX_9_11200001 chrX_11200001 RAL-42 1874 chrX 11205279 11205322 chrX 11205375 11205418 10 96 3.5 3.5 3.5 2.2 139 chrX 11205279 intergenic not near genes chrX 11205348 intergenic not near genes chrX 11205418 intergenic not near genes chrX_10_11205001 chrX_11205001 RAL-42 1875 chrX 11254153 11254167 chrX 11254284 11254298 6 131 6.0 2.0 4.0 1.2 145 chrX 11254153 intron CG44422 - chrX 11254226 intron CG44422 - chrX 11254298 intron CG44422 - chrX_6_11250001 chrX_11250001 RAL-42 1876 chrX 11633405 11633444 chrX 11640479 11640518 297 4 7074 1.0 2.5 1.8 1.4 7113 chrX 11633405 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640518 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-42 1877 chrX 11684860 11684896 chrX 11685006 11685042 4 146 2.0 0.0 1.0 2.0 182 chrX 11684860 intron bif + chrX 11684951 intron bif + chrX 11685042 intron bif + chrX_4_11680001 chrX_11680001 RAL-42 1878 chrX 11719850 11719898 chrX 11719950 11719998 9 99 5.5 4.0 4.8 1.6 148 chrX 11719850 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719998 intergenic prtp +,Tango10 + chrX_9_11715001 chrX_11715001 RAL-42 1879 chrX 11798996 11799038 chrX 11799102 11799144 8 106 4.0 3.0 3.5 1.8 148 chrX 11798996 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799144 intron CkIIbeta + chrX_8_11795001 chrX_11795001 RAL-42 1880 chrX 11922361 11922374 chrX 11922514 11922527 5 153 0.0 2.0 1.0 2.5 166 chrX 11922361 exon Sclp - chrX 11922444 intron Sclp - chrX 11922527 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-42 1881 chrX 11936562 11936586 chrX 11936671 11936703 4 116 0.0 1.0 0.5 2.7 141 chrX 11936562 intron cac - chrX 11936632 intron cac - chrX 11936703 exon cac - chrX_4_11935001 chrX_11935001 RAL-42 1882 chrX 12057833 12057867 chrX 12058231 12058281 9 412 0.5 4.0 2.2 2.8 448 chrX 12057833 intron,intron CR43960 +,Ten-a + chrX 12058057 intron,intron CR43960 +,Ten-a + chrX 12058281 intron,intron CR43960 +,Ten-a + chrX_9_12055001 chrX_12055001 RAL-42 1883 chrX 12202748 12202799 chrX 12202852 12202903 8 104 3.0 5.5 4.2 1.5 155 chrX 12202748 intron Ten-a + chrX 12202826 intron Ten-a + chrX 12202903 intron Ten-a + chrX_8_12200001 chrX_12200001 RAL-42 1884 chrX 12272829 12272867 chrX 12272927 12272965 5 99 4.5 4.5 4.5 0.9 136 chrX 12272829 intron Ten-a + chrX 12272897 intron Ten-a + chrX 12272965 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-42 1885 chrX 12377805 12377840 chrX 12378002 12378037 4 197 5.0 5.5 5.2 0.6 232 chrX 12377805 intergenic Ir11a - chrX 12377921 intergenic Ir11a - chrX 12378037 intergenic Ir11a - chrX_4_12375001 chrX_12375001 RAL-42 1886 chrX 12497003 12497048 chrX 12497100 12497135 6 95 1.0 1.5 1.2 2.7 132 chrX 12497003 intergenic CG2556 +,Mks1 - chrX 12497069 intergenic CG2556 +,Mks1 - chrX 12497135 intergenic CG2556 + chrX_6_12495001 chrX_12495001 RAL-42 1887 chrX 12511339 12511350 chrX 12511443 12511454 4 104 0.0 7.0 3.5 0.9 115 chrX 12511339 intron CG2556 + chrX 12511396 intron CG2556 + chrX 12511454 intron CG2556 + chrX_4_12510001 chrX_12510001 RAL-42 1888 chrX 12912608 12912649 chrX 12912725 12912766 7 117 1.0 1.5 1.2 3.2 158 chrX 12912608 5` UTR CR45625 + chrX 12912687 5` UTR CR45625 + chrX 12912766 5` UTR CR45625 + chrX_7_12910001 chrX_12910001 RAL-42 1889 chrX 11109417 11109417 chrX 12946234 12946234 9 1836817 22.5 17.0 19.8 0.4 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_9_12025001 chrX_12025001 RAL-42 1890 chrX 12946234 12946234 chrX 18572525 18572525 4 5626291 13.0 13.5 13.2 0.3 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-42 1891 chrX 13172331 13172381 chrX 13172427 13172477 10 90 3.5 3.0 3.2 2.4 146 chrX 13172331 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172477 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-42 1892 chrX 13236883 13236901 chrX 13236987 13237006 8 105 0.0 7.5 3.8 1.7 123 chrX 13236883 intron mew - chrX 13236944 intron mew - chrX 13237006 intron mew - chrX_8_13235001 chrX_13235001 RAL-42 1893 chrX 13401464 13401514 chrX 13401836 13401886 jockey 7 372 2.5 4.0 3.2 1.7 422 chrX 13401464 intergenic CG1673 +,CG12725 - chrX 13401675 intergenic CG12725 -,CG1673 + chrX 13401886 3` UTR CG12725 - chrX_7_13400001 chrX_13400001 RAL-42 1894 chrX 13429455 13429486 chrX 13430611 13430655 jockey 7 1166 4.5 2.5 3.5 1.6 1200 chrX 13429455 intergenic not near genes chrX 13430055 intergenic not near genes chrX 13430655 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-42 1895 chrX 13463627 13463670 chrX 13469224 13469259 mdg3 10 5595 3.5 0.5 2.0 3.3 5632 chrX 13463627 intron Neto + chrX 13466443 intron Neto + chrX 13469259 intron Neto + chrX_10_13465001 chrX_13465001 RAL-42 1896 chrX 13513368 13513406 chrX 13513450 13513464 6 68 2.0 2.0 2.0 2.0 96 chrX 13513368 intron Neto + chrX 13513416 intron Neto + chrX 13513464 intron Neto + chrX_6_13510001 chrX_13510001 RAL-42 1897 chrX 13843378 13843399 chrX 13843475 13843496 5 97 0.0 0.0 0.0 5.0 118 chrX 13843378 intron AMPdeam - chrX 13843437 intron AMPdeam - chrX 13843496 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-42 1898 chrX 13908779 13908805 chrX 13908876 13908893 5 94 3.5 8.0 5.8 0.7 114 chrX 13908779 intron mamo - chrX 13908836 intron mamo - chrX 13908893 intron mamo - chrX_5_13905001 chrX_13905001 RAL-42 1899 chrX 13937974 13937976 chrX 13941264 13941267 I-element 4 3291 3.5 5.0 4.2 0.8 3293 chrX 13937974 intron mamo - chrX 13939620 intron mamo - chrX 13941267 intron mamo - chrX_4_13935001 chrX_13935001 RAL-42 1900 chrX 13974213 13974259 chrX 13974324 13974370 12 110 2.0 0.0 1.0 6.0 157 chrX 13974213 intron mamo - chrX 13974292 intron mamo - chrX 13974370 intron mamo - chrX_12_13970001 chrX_13970001 RAL-42 1901 chrX 14043095 14043132 chrX 14043500 14043503 4 394 1.5 1.5 1.5 1.6 408 chrX 14043095 intergenic not near genes chrX 14043299 intergenic not near genes chrX 14043503 intergenic not near genes chrX_4_14040001 chrX_14040001 RAL-42 1902 chrX 14105000 14105045 chrX 14114171 14114209 roo 11 9166 4.0 2.5 3.2 2.6 9209 chrX 14105000 intergenic not near genes chrX 14109604 intergenic not near genes chrX 14114209 5` UTR CR44657 + chrX_11_14105001 chrX_14105001 RAL-42 1903 chrX 14122606 14122650 chrX 14122702 14122746 9 96 1.0 2.5 1.8 3.2 140 chrX 14122606 intergenic not near genes chrX 14122676 intergenic not near genes chrX 14122746 intergenic not near genes chrX_9_14120001 chrX_14120001 RAL-42 1904 chrX 14167391 14167423 chrX 14167506 14167538 11 115 3.0 2.5 2.8 2.9 147 chrX 14167391 intergenic not near genes chrX 14167464 intergenic not near genes chrX 14167538 intergenic not near genes chrX_11_14165001 chrX_14165001 RAL-42 1905 chrX 14209444 14209489 chrX 14209555 14209600 11 110 2.5 4.0 3.2 2.6 156 chrX 14209444 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209600 intron,intron l(1)G0007 +,l(1)G0469 - chrX_11_14205001 chrX_14205001 RAL-42 1906 chrX 14312754 14312774 chrX 14312855 14312875 5 101 5.0 0.5 2.8 1.3 121 chrX 14312754 intergenic not near genes chrX 14312814 intergenic not near genes chrX 14312875 intergenic not near genes chrX_5_14310001 chrX_14310001 RAL-42 1907 chrX 14312783 14312808 chrX 14312884 14312908 4 101 4.0 0.5 2.2 1.2 125 chrX 14312783 intergenic not near genes chrX 14312846 intergenic not near genes chrX 14312908 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-42 1908 chrX 14416287 14416317 chrX 14421075 14421105 F-element 8 4788 5.5 3.0 4.2 1.5 4818 chrX 14416287 intron dpr8 + chrX 14418696 intron dpr8 + chrX 14421105 intron dpr8 + chrX_8_14415001 chrX_14415001 RAL-42 1909 chrX 14499605 14499631 chrX 14499830 14499856 6 224 1.0 3.0 2.0 2.0 251 chrX 14499605 intergenic not near genes chrX 14499730 intergenic not near genes chrX 14499856 intergenic not near genes chrX_6_14495001 chrX_14495001 RAL-42 1910 chrX 14658151 14658164 chrX 14658252 14658264 7 101 0.0 4.5 2.2 2.2 113 chrX 14658151 intergenic not near genes chrX 14658208 intergenic not near genes chrX 14658264 intergenic not near genes chrX_7_14655001 chrX_14655001 RAL-42 1911 chrX 14778014 14778051 chrX 14782831 14782868 Doc 17 4817 10.5 5.5 8.0 1.9 4854 chrX 14778014 intergenic CG5347 + chrX 14780441 intergenic not near genes chrX 14782868 intergenic Ag5r2 - chrX_17_14780001 chrX_14780001 RAL-42 1912 chrX 14813722 14813751 chrX 14813820 14813849 5 98 4.0 0.5 2.2 1.6 127 chrX 14813722 intron rut - chrX 14813786 intron rut - chrX 14813849 intron rut - chrX_5_14810001 chrX_14810001 RAL-42 1913 chrX 14816812 14816854 chrX 14816910 14816952 12 98 0.0 3.5 1.8 4.3 140 chrX 14816812 intron rut - chrX 14816882 intron rut - chrX 14816952 intron rut - chrX_12_14815001 chrX_14815001 RAL-42 1914 chrX 14917862 14917886 chrX 14917978 14917981 4 123 13.0 15.0 14.0 0.3 119 chrX 14917862 intron,exon Flo2 +,Eo - chrX 14917922 intron,exon Flo2 +,Eo - chrX 14917981 intron,exon Flo2 +,Eo - chrX_4_14915001 chrX_14915001 RAL-42 1915 chrX 14936827 14936884 chrX 14946114 14946161 roo 17 9284 0.5 3.0 1.8 6.1 9334 chrX 14936827 intron pdgy - chrX 14941494 intron pdgy - chrX 14946161 intron pdgy - chrX_17_14940001 chrX_14940001 RAL-42 1916 chrX 14960374 14960413 chrX 14960535 14960574 8 161 3.5 4.5 4.0 1.6 200 chrX 14960374 intron eag + chrX 14960474 intron eag + chrX 14960574 intron eag + chrX_8_14960001 chrX_14960001 RAL-42 1917 chrX 15123304 15123315 chrX 15123418 15123427 4 120 2.5 2.0 2.2 1.2 123 chrX 15123304 intergenic not near genes chrX 15123366 intergenic not near genes chrX 15123427 intergenic not near genes chrX_4_15120001 chrX_15120001 RAL-42 1918 chrX 15248241 15248293 chrX 15248337 15248389 11 96 3.0 4.0 3.5 2.4 148 chrX 15248241 intergenic not near genes chrX 15248315 intergenic not near genes chrX 15248389 intergenic not near genes chrX_11_15245001 chrX_15245001 RAL-42 1919 chrX 15273713 15273737 chrX 15274877 15274913 1360 5 1176 1.0 0.5 0.8 2.8 1200 chrX 15273713 intergenic not near genes chrX 15274313 intergenic not near genes chrX 15274913 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-42 1920 chrX 15277620 15277667 chrX 15277725 15277743 13 103 2.5 2.5 2.5 3.7 123 chrX 15277620 intergenic not near genes chrX 15277682 intergenic not near genes chrX 15277743 intergenic not near genes chrX_13_15275001 chrX_15275001 RAL-42 1921 chrX 15358286 15358341 chrX 15358394 15358449 11 108 2.5 1.0 1.8 3.9 163 chrX 15358286 intron acj6 - chrX 15358368 intron acj6 - chrX 15358449 intron acj6 - chrX_11_15355001 chrX_15355001 RAL-42 1922 chrX 15369847 15369856 chrX 15369942 15369959 4 101 3.0 5.5 4.2 0.8 112 chrX 15369847 intron acj6 - chrX 15369903 intron acj6 - chrX 15369959 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-42 1923 chrX 15421902 15421951 chrX 15423433 15423469 pogo 6 1529 0.5 4.0 2.2 1.9 1567 chrX 15421902 intron Cngl - chrX 15422686 intron Cngl - chrX 15423469 intron Cngl - chrX_6_15420001 chrX_15420001 RAL-42 1924 chrX 15435688 15435702 chrX 15436141 15436152 rover 4 452 2.5 4.5 3.5 0.9 464 chrX 15435688 intron Cngl - chrX 15435920 intron Cngl - chrX 15436152 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-42 1925 chrX 15648196 15648239 chrX 15648735 15648771 8 535 2.0 7.0 4.5 1.5 575 chrX 15648196 intergenic not near genes chrX 15648484 intergenic not near genes chrX 15648771 intergenic not near genes chrX_8_15645001 chrX_15645001 RAL-42 1926 chrX 15681383 15681426 chrX 15681478 15681508 10 99 3.0 4.5 3.8 2.1 125 chrX 15681383 intergenic not near genes chrX 15681446 intergenic not near genes chrX 15681508 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-42 1927 chrX 15713230 15713255 chrX 15713346 15713371 6 114 4.0 3.5 3.8 1.2 141 chrX 15713230 intron CG8184 + chrX 15713300 intron CG8184 + chrX 15713371 intron CG8184 + chrX_6_15710001 chrX_15710001 RAL-42 1928 chrX 15927677 15927698 chrX 15927747 15927777 5 75 2.0 2.0 2.0 1.7 100 chrX 15927677 exon,3` UTR Lcch3 +,Ranbp16 - chrX 15927727 exon,3` UTR Lcch3 +,Ranbp16 - chrX 15927777 exon,3` UTR Lcch3 +,Ranbp16 - chrX_5_15925001 chrX_15925001 RAL-42 1929 chrX 16100539 16100591 chrX 16100638 16100691 5 98 2.0 2.0 2.0 1.7 152 chrX 16100539 intron,intron CG42353 -,CG42354 - chrX 16100615 intron,intron CG42353 -,CG42354 - chrX 16100691 intron,intron CG42353 -,CG42354 - chrX_5_16100001 chrX_16100001 RAL-42 1930 chrX 16222766 16222810 chrX 16231136 16231179 roo 5 8370 1.5 1.0 1.2 2.3 8413 chrX 16222766 intergenic not near genes chrX 16226972 intergenic not near genes chrX 16231179 intergenic not near genes chrX_5_16225001 chrX_16225001 RAL-42 1931 chrX 16245932 16245963 chrX 16246059 16246090 INE-1 6 126 4.0 0.0 2.0 2.0 158 chrX 16245932 intergenic not near genes chrX 16246011 intergenic not near genes chrX 16246090 intergenic not near genes chrX_6_16245001 chrX_16245001 RAL-42 1932 chrX 16329405 16329447 chrX 16329504 16329550 4 99 0.0 2.5 1.2 1.8 145 chrX 16329405 intron CG9919 - chrX 16329478 intron CG9919 - chrX 16329550 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-42 1933 chrX 16340646 16340694 chrX 16349823 16349871 roo 16 9177 4.0 5.5 4.8 2.8 9225 chrX 16340646 intergenic Dsp1 + chrX 16345258 intergenic not near genes chrX 16349871 intergenic sl + chrX_16_16345001 chrX_16345001 RAL-42 1934 chrX 16492625 16492675 chrX 16498222 16498272 mdg3 25 5597 3.0 5.0 4.0 5.0 5647 chrX 16492625 intron para - chrX 16495448 intron para - chrX 16498272 exon para - chrX_25_16495001 chrX_16495001 RAL-42 1935 chrX 16785272 16785305 chrX 16785396 16785429 8 124 5.5 8.0 6.8 1.0 157 chrX 16785272 3` UTR CG9609 - chrX 16785350 3` UTR CG9609 - chrX 16785429 3` UTR CG9609 - chrX_8_16785001 chrX_16785001 RAL-42 1936 chrX 16936004 16936030 chrX 16936442 16936468 jockey 9 438 0.0 8.0 4.0 1.8 464 chrX 16936004 intron CG4928 + chrX 16936236 intron CG4928 + chrX 16936468 intron CG4928 + chrX_9_16935001 chrX_16935001 RAL-42 1937 chrX 17011968 17011980 chrX 17012057 17012067 4 92 0.5 3.5 2.0 1.3 99 chrX 17011968 intron CG45002 - chrX 17012018 intron CG45002 - chrX 17012067 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-42 1938 chrX 17195183 17195233 chrX 17200289 17200340 flea 22 5105 4.0 5.0 4.5 4.0 5157 chrX 17195183 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200340 3` UTR baz + chrX_22_17195001 chrX_17195001 RAL-42 1939 chrX 17205830 17205857 chrX 17205940 17205967 11 110 3.0 6.0 4.5 2.0 137 chrX 17205830 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205967 intergenic CG32564 + chrX_11_17205001 chrX_17205001 RAL-42 1940 chrX 17229938 17229966 chrX 17230061 17230089 10 121 4.0 5.5 4.8 1.7 151 chrX 17229938 intergenic CG10597 - chrX 17230014 intergenic CG10597 - chrX 17230089 intergenic CG10597 - chrX_10_17230001 chrX_17230001 RAL-42 1941 chrX 17708814 17708857 chrX 17708911 17708956 6 98 3.0 7.5 5.2 1.0 142 chrX 17708814 intron CG8173 - chrX 17708885 intron CG8173 - chrX 17708956 intron CG8173 - chrX_6_17705001 chrX_17705001 RAL-42 1942 chrX 17784461 17784471 chrX 17784557 17784567 6 96 0.0 5.5 2.8 1.6 106 chrX 17784461 intergenic not near genes chrX 17784514 intergenic not near genes chrX 17784567 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-42 1943 chrX 17911835 17911873 chrX 17911943 17911981 6 103 0.0 6.0 3.0 1.5 146 chrX 17911835 intron CG6847 + chrX 17911908 intron CG6847 + chrX 17911981 intron CG6847 + chrX_6_17910001 chrX_17910001 RAL-42 1944 chrX 18020804 18020846 chrX 18020901 18020953 5 105 3.5 1.5 2.5 1.4 149 chrX 18020804 intron Sh - chrX 18020878 intron Sh - chrX 18020953 intron Sh - chrX_5_18020001 chrX_18020001 RAL-42 1945 chrX 18166451 18166488 chrX 18167079 18167116 8 628 1.5 4.0 2.8 2.1 665 chrX 18166451 intron Frq1 + chrX 18166784 intron Frq1 + chrX 18167116 intron Frq1 + chrX_8_18165001 chrX_18165001 RAL-42 1946 chrX 18194049 18194096 chrX 18194604 18194651 BS 5 555 2.5 1.5 2.0 1.7 602 chrX 18194049 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194651 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-42 1947 chrX 18218021 18218062 chrX 18218157 18218199 7 137 4.5 6.5 5.5 1.1 178 chrX 18218021 intron CG33639 - chrX 18218110 intron CG33639 - chrX 18218199 intron CG33639 - chrX_7_18215001 chrX_18215001 RAL-42 1948 chrX 18245675 18245729 chrX 18246030 18246080 5 351 2.0 1.0 1.5 2.0 405 chrX 18245675 intergenic CR45607 - chrX 18245878 intergenic not near genes chrX 18246080 intergenic not near genes chrX_5_18245001 chrX_18245001 RAL-42 1949 chrX 18270048 18270055 chrX 18270156 18270162 4 106 2.5 1.0 1.8 1.4 114 chrX 18270048 intergenic not near genes chrX 18270105 intergenic not near genes chrX 18270162 intergenic not near genes chrX_4_18270001 chrX_18270001 RAL-42 1950 chrX 18429476 18429522 chrX 18434807 18434853 Transpac 13 5331 3.5 5.0 4.2 2.5 5377 chrX 18429476 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434853 intergenic not near genes chrX_13_18430001 chrX_18430001 RAL-42 1951 chrX 18524344 18524375 chrX 18524443 18524474 12 99 3.5 4.0 3.8 2.5 130 chrX 18524344 intron Bx + chrX 18524409 intron Bx + chrX 18524474 intron Bx + chrX_12_18520001 chrX_18520001 RAL-42 1952 chrX 18554840 18554870 chrX 18554943 18554968 4 102 1.0 4.0 2.5 1.1 128 chrX 18554840 intron Bx + chrX 18554904 intron Bx + chrX 18554968 intron Bx + chrX_4_18550001 chrX_18550001 RAL-42 1953 chrX 12946235 12946235 chrX 18572525 18572527 10 5626290 13.0 13.5 13.2 0.7 5626292 chrX 12946235 3` UTR fne + chrX 15759381 intron Graf - chrX 18572527 intergenic not near genes chrX_10_15755001 chrX_15755001 RAL-42 1954 chrX 18620315 18620339 chrX 18620439 18620462 7 124 6.5 7.5 7.0 0.9 147 chrX 18620315 intergenic not near genes chrX 18620388 intergenic not near genes chrX 18620462 intergenic not near genes chrX_7_18620001 chrX_18620001 RAL-42 1955 chrX 18645004 18645040 chrX 18645117 18645158 10 118 4.5 3.0 3.8 2.1 154 chrX 18645004 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645158 intron Rip11 - chrX_10_18645001 chrX_18645001 RAL-42 1956 chrX 18671201 18671250 chrX 18671303 18671352 14 102 2.0 3.5 2.8 3.7 151 chrX 18671201 intergenic not near genes chrX 18671276 intergenic not near genes chrX 18671352 intergenic not near genes chrX_14_18670001 chrX_18670001 RAL-42 1957 chrX 18896502 18896548 chrX 18896633 18896679 7 131 1.5 6.0 3.8 1.5 177 chrX 18896502 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896679 intergenic CG7349 + chrX_7_18895001 chrX_18895001 RAL-42 1958 chrX 18944882 18944899 chrX 18944996 18945013 5 114 0.0 4.5 2.2 1.6 131 chrX 18944882 intron CG43759 + chrX 18944948 intron CG43759 + chrX 18945013 intron CG43759 + chrX_5_18940001 chrX_18940001 RAL-42 1959 chrX 19014344 19014388 chrX 19014443 19014482 6 96 2.5 2.5 2.5 1.7 138 chrX 19014344 intron CG43759 + chrX 19014413 intron CG43759 + chrX 19014482 intron CG43759 + chrX_6_19010001 chrX_19010001 RAL-42 1960 chrX 19036409 19036417 chrX 19036505 19036512 6 96 8.5 0.0 4.2 1.2 103 chrX 19036409 intergenic not near genes chrX 19036460 intergenic not near genes chrX 19036512 intergenic not near genes chrX_6_19035001 chrX_19035001 RAL-42 1961 chrX 19060395 19060432 chrX 19065199 19065236 Doc 12 4804 4.0 3.5 3.8 2.5 4841 chrX 19060395 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065236 intron CG14190 + chrX_12_19060001 chrX_19060001 RAL-42 1962 chrX 19073664 19073698 chrX 19073771 19073804 5 106 3.5 3.0 3.2 1.2 140 chrX 19073664 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073804 intergenic not near genes chrX_5_19070001 chrX_19070001 RAL-42 1963 chrX 19119693 19119719 chrX 19119799 19119825 6 106 8.0 1.0 4.5 1.1 132 chrX 19119693 intergenic not near genes chrX 19119759 intergenic not near genes chrX 19119825 intergenic not near genes chrX_6_19115001 chrX_19115001 RAL-42 1964 chrX 19124424 19124457 chrX 19124532 19124566 8 108 3.0 5.0 4.0 1.6 142 chrX 19124424 intergenic CG15882 - chrX 19124495 intergenic CG15882 - chrX 19124566 intergenic CG15882 -,tgy - chrX_8_19120001 chrX_19120001 RAL-42 1965 chrX 19125675 19125721 chrX 19125819 19125870 23 147 3.5 7.0 5.2 3.7 195 chrX 19125675 intron tgy - chrX 19125772 intron tgy - chrX 19125870 intron tgy - chrX_23_19125001 chrX_19125001 RAL-42 1966 chrX 19136540 19136581 chrX 19143480 19143520 412 8 6939 1.5 2.0 1.8 2.9 6980 chrX 19136540 intergenic not near genes chrX 19140030 intergenic not near genes chrX 19143520 3` UTR RhoGAP18B - chrX_8_19140001 chrX_19140001 RAL-42 1967 chrX 19176201 19176229 chrX 19176301 19176315 4 97 1.0 1.0 1.0 2.0 114 chrX 19176201 3` UTR CG7556 - chrX 19176258 3` UTR CG7556 - chrX 19176315 3` UTR CG7556 - chrX_4_19175001 chrX_19175001 RAL-42 1968 chrX 19330443 19330464 chrX 19330583 19330604 8 140 6.5 6.5 6.5 1.1 161 chrX 19330443 intron nAChRalpha7 - chrX 19330524 intron nAChRalpha7 - chrX 19330604 intron nAChRalpha7 - chrX_8_19330001 chrX_19330001 RAL-42 1969 chrX 19352459 19352502 chrX 19370488 19370528 4 18028 25.0 4.5 14.8 0.3 18069 chrX 19352459 intergenic not near genes chrX 19361494 intron kek5 + chrX 19370528 intron kek5 + chrX_4_19360001 chrX_19360001 RAL-42 1970 chrX 19380154 19380175 chrX 19380415 19380436 pogo 4 257 3.0 5.5 4.2 0.8 282 chrX 19380154 intron kek5 + chrX 19380295 intron kek5 + chrX 19380436 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-42 1971 chrX 19472099 19472154 chrX 19472689 19472743 jockey 6 581 2.0 4.5 3.2 1.4 644 chrX 19472099 intergenic kek5 + chrX 19472421 intergenic not near genes chrX 19472743 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-42 1972 chrX 19470733 19470783 chrX 19474966 19475015 4 4232 33.5 42.0 37.8 0.1 4282 chrX 19470733 3` UTR kek5 + chrX 19472874 intergenic not near genes chrX 19475015 intron CG32533 - chrX_4_19470001 chrX_19470001 RAL-42 1973 chrX 19500544 19500750 chrX 19500638 19500857 13 101 2.5 1.5 2.0 4.3 313 chrX 19500544 intron,intron CG14200 +,Pfrx + chrX 19500700 intron,intron CG14200 +,Pfrx + chrX 19500857 intron,intron CG14200 +,Pfrx + chrX_13_19500001 chrX_19500001 RAL-42 1974 chrX 19576562 19576584 chrX 19576659 19576682 4 98 4.5 3.5 4.0 0.8 120 chrX 19576562 intron Tao - chrX 19576622 intron Tao - chrX 19576682 intron Tao - chrX_4_19575001 chrX_19575001 RAL-42 1975 chrX 19662012 19662054 chrX 19662255 19662297 5 241 4.0 4.5 4.2 1.0 285 chrX 19662012 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662297 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-42 1976 chrX 19710061 19710104 chrX 19711867 19711910 S-element 16 1805 1.5 3.5 2.5 4.6 1849 chrX 19710061 intron meso18E - chrX 19710986 intron meso18E - chrX 19711910 intron meso18E - chrX_16_19710001 chrX_19710001 RAL-42 1977 chrX 19821599 19821751 chrX 19821703 19821856 7 105 0.5 0.5 0.5 4.7 257 chrX 19821599 intergenic not near genes chrX 19821728 intergenic not near genes chrX 19821856 intergenic not near genes chrX_7_19820001 chrX_19820001 RAL-42 1978 chrX 19881435 19881483 chrX 19881536 19881584 16 100 4.5 4.5 4.5 2.9 149 chrX 19881435 intron Hers + chrX 19881510 intron Hers + chrX 19881584 intron Hers + chrX_16_19880001 chrX_19880001 RAL-42 1979 chrX 19897373 19897413 chrX 19897469 19897510 6 97 3.5 4.0 3.8 1.2 137 chrX 19897373 intron Hers + chrX 19897442 intron Hers + chrX 19897510 intron Hers + chrX_6_19895001 chrX_19895001 RAL-42 1980 chrX 19971800 19971824 chrX 19971897 19971921 4 97 3.0 4.0 3.5 0.9 121 chrX 19971800 intergenic not near genes chrX 19971860 intergenic not near genes chrX 19971921 intergenic not near genes chrX_4_19970001 chrX_19970001 RAL-42 1981 chrX 20065790 20065830 chrX 20065889 20065929 15 99 4.0 4.0 4.0 3.0 139 chrX 20065790 intergenic not near genes chrX 20065860 intergenic not near genes chrX 20065929 intergenic not near genes chrX_15_20065001 chrX_20065001 RAL-42 1982 chrX 20069257 20069294 chrX 20069395 20069447 5 144 2.0 1.5 1.8 1.8 190 chrX 20069257 intergenic not near genes chrX 20069352 intergenic not near genes chrX 20069447 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-42 1983 chrX 20125380 20125398 chrX 20125482 20125500 13 102 3.0 8.0 5.5 2.0 120 chrX 20125380 intergenic CG34331 + chrX 20125440 intergenic CG34331 + chrX 20125500 intergenic CG34331 + chrX_13_20125001 chrX_20125001 RAL-42 1984 chrX 20271486 20271519 chrX 20271597 20271631 4 112 2.0 0.0 1.0 2.0 145 chrX 20271486 intergenic not near genes chrX 20271558 intergenic not near genes chrX 20271631 intergenic not near genes chrX_4_20270001 chrX_20270001 RAL-42 1985 chrX 20312860 20312911 chrX 20312958 20313009 13 97 1.5 3.5 2.5 3.7 149 chrX 20312860 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20313009 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-42 1986 chrX 20314585 20314601 chrX 20314984 20315000 5 398 1.5 2.0 1.8 1.8 415 chrX 20314585 intron CG1504 - chrX 20314792 intron CG1504 - chrX 20315000 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-42 1987 chrX 20359122 20359157 chrX 20359220 20359255 6 98 3.5 2.5 3.0 1.5 133 chrX 20359122 intergenic not near genes chrX 20359188 intergenic not near genes chrX 20359255 intergenic not near genes chrX_6_20355001 chrX_20355001 RAL-42 1988 chrX 20363031 20363040 chrX 20363137 20363146 5 106 2.0 8.0 5.0 0.8 115 chrX 20363031 intergenic not near genes chrX 20363088 intergenic not near genes chrX 20363146 intergenic not near genes chrX_5_20360001 chrX_20360001 RAL-42 1989 chrX 20377325 20377334 chrX 20378811 20378821 hobo 4 1486 5.0 5.5 5.2 0.6 1496 chrX 20377325 intergenic not near genes chrX 20378073 intergenic not near genes chrX 20378821 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-42 1990 chrX 20443176 20443200 chrX 20443258 20443296 4 92 7.0 7.5 7.2 0.5 120 chrX 20443176 exon CG1695 + chrX 20443236 intron CG1695 + chrX 20443296 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-42 1991 chrX 20504109 20504138 chrX 20505649 20505679 transib2 12 1540 7.0 3.0 5.0 2.0 1570 chrX 20504109 intron RhoGAP19D - chrX 20504894 intron RhoGAP19D - chrX 20505679 intron RhoGAP19D - chrX_12_20500001 chrX_20500001 RAL-42 1992 chrX 20594296 20594312 chrX 20594387 20594418 5 103 4.0 2.0 3.0 1.2 122 chrX 20594296 intron RunxA - chrX 20594357 intron RunxA - chrX 20594418 intron RunxA - chrX_5_20590001 chrX_20590001 RAL-42 1993 chrX 20635414 20635438 chrX 20635600 20635624 5 186 4.0 2.5 3.2 1.2 210 chrX 20635414 intergenic not near genes chrX 20635519 intergenic not near genes chrX 20635624 intergenic not near genes chrX_5_20635001 chrX_20635001 RAL-42 1994 chrX 20704141 20704180 chrX 20704418 20704462 5 281 0.0 2.0 1.0 2.5 321 chrX 20704141 intergenic not near genes chrX 20704302 intergenic not near genes chrX 20704462 intergenic not near genes chrX_5_20700001 chrX_20700001 RAL-42 1995 chrX 20824071 20824093 chrX 20824194 20824195 6 119 6.0 2.5 4.2 1.2 124 chrX 20824071 intron,intron shakB -,CG15450 + chrX 20824133 intron,intron shakB -,CG15450 + chrX 20824195 intron,intron shakB -,CG15450 + chrX_6_20820001 chrX_20820001 RAL-42 1996 chrX 21008637 21008686 chrX 21008745 21008793 5 107 4.5 3.0 3.8 1.0 156 chrX 21008637 intergenic not near genes chrX 21008715 intergenic not near genes chrX 21008793 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-42 1997 chrX 21055678 21055720 chrX 21055769 21055816 13 94 3.0 4.5 3.8 2.7 138 chrX 21055678 intron bves + chrX 21055747 intron bves + chrX 21055816 intron bves + chrX_13_21055001 chrX_21055001 RAL-42 1998 chrX 21061857 21061894 chrX 21062362 21062399 roo 19 505 3.5 9.0 6.2 2.6 542 chrX 21061857 intron bves + chrX 21062128 intron bves + chrX 21062399 intron,3` UTR bves +,CG32512 - chrX_19_21060001 chrX_21060001 RAL-42 1999 chrX 21077579 21077631 chrX 21077688 21077729 6 105 1.0 7.0 4.0 1.2 150 chrX 21077579 intron bves + chrX 21077654 intron bves + chrX 21077729 intron bves + chrX_6_21075001 chrX_21075001 RAL-42 2000 chrX 21078757 21078780 chrX 21078850 21078878 4 97 3.0 0.0 1.5 1.6 121 chrX 21078757 intron bves + chrX 21078818 intron bves + chrX 21078878 intron bves + chrX_4_21075001 chrX_21075001 RAL-42 2001 chrX 21118041 21118090 chrX 21118157 21118206 19 115 7.0 5.5 6.2 2.6 165 chrX 21118041 intron CG15445 + chrX 21118124 intron CG15445 + chrX 21118206 intron CG15445 + chrX_19_21115001 chrX_21115001 RAL-42 2002 chrX 21166129 21166164 chrX 21166227 21166265 4 99 1.5 2.5 2.0 1.3 136 chrX 21166129 intergenic not near genes chrX 21166197 intergenic not near genes chrX 21166265 intergenic not near genes chrX_4_21165001 chrX_21165001 RAL-42 2003 chrX 21179268 21179305 chrX 21179368 21179405 7 100 1.5 3.0 2.2 2.2 137 chrX 21179268 intergenic not near genes chrX 21179336 intergenic not near genes chrX 21179405 intergenic not near genes chrX_7_21175001 chrX_21175001 RAL-42 2004 chrX 21253281 21253306 chrX 21253380 21253395 6 94 1.0 2.0 1.5 2.4 114 chrX 21253281 intron CG32521 - chrX 21253338 intron CG32521 - chrX 21253395 intron CG32521 - chrX_6_21250001 chrX_21250001 RAL-42 2005 chrX 21258839 21258849 chrX 21258959 21258969 4 120 4.5 5.5 5.0 0.7 130 chrX 21258839 intron CG32521 - chrX 21258904 intron CG32521 - chrX 21258969 intron CG32521 - chrX_4_21255001 chrX_21255001 RAL-42 2006 chrX 21328098 21328140 chrX 21328229 21328271 11 131 4.5 2.5 3.5 2.4 173 chrX 21328098 3` UTR CG1486 + chrX 21328184 intergenic CG1486 +,tty - chrX 21328271 intergenic CG1486 +,tty - chrX_11_21325001 chrX_21325001 RAL-42 2007 chrX 21358060 21358096 chrX 21358160 21358196 13 100 6.0 2.5 4.2 2.5 136 chrX 21358060 intergenic sol +,Sep1 + chrX 21358128 intergenic Sep1 +,sol + chrX 21358196 intergenic Sep1 +,sol + chrX_13_21355001 chrX_21355001 RAL-42 2008 chrX 21414357 21414377 chrX 21414448 21414473 5 94 2.5 3.5 3.0 1.2 116 chrX 21414357 intergenic not near genes chrX 21414415 intergenic not near genes chrX 21414473 intergenic not near genes chrX_5_21410001 chrX_21410001 RAL-42 2009 chrX 21428320 21428368 chrX 21428530 21428578 10 205 3.5 3.5 3.5 2.2 258 chrX 21428320 intron CG42343 - chrX 21428449 intron CG42343 - chrX 21428578 intron CG42343 - chrX_10_21425001 chrX_21425001 RAL-42 2010 chrX 21455227 21455241 chrX 21455434 21455441 4 205 0.0 1.5 0.8 2.2 214 chrX 21455227 intron CG42343 - chrX 21455334 intron CG42343 - chrX 21455441 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-42 2011 chrX 21458680 21458727 chrX 21464136 21464172 Ivk 6 5454 2.5 7.0 4.8 1.0 5492 chrX 21458680 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464172 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-42 2012 chrX 21516986 21517018 chrX 21517065 21517117 6 86 2.5 5.0 3.8 1.2 131 chrX 21516986 intron CR45082 - chrX 21517052 intron CR45082 - chrX 21517117 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-42 2013 chrX 21565399 21565435 chrX 21565491 21565533 9 97 3.0 5.0 4.0 1.8 134 chrX 21565399 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565533 intergenic not near genes chrX_9_21565001 chrX_21565001 RAL-42 2014 chrX 21668252 21668272 chrX 21668357 21668377 6 105 2.5 1.5 2.0 2.0 125 chrX 21668252 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668377 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-42 2015 chrX 22448253 22448294 chrX 22448411 22448453 10 159 3.5 5.0 4.2 1.9 200 chrX 22448253 intron CG14615 - chrX 22448353 intron CG14615 - chrX 22448453 intron CG14615 - chrX_10_22445001 chrX_22445001 RAL-42 2016 chrX 22681464 22681478 chrX 22688940 22688954 HMS-Beagle2 4 7476 6.0 2.5 4.2 0.8 7490 chrX 22681464 intron CR44997 + chrX 22685209 intron CR44997 + chrX 22688954 intron CR44997 + chrX_4_22685001 chrX_22685001 RAL-42 2017 chrX 22694309 22694353 chrX 22694419 22694460 4 110 2.0 1.0 1.5 1.6 151 chrX 22694309 intron CR44997 + chrX 22694384 intron CR44997 + chrX 22694460 intron CR44997 + chrX_4_22690001 chrX_22690001 RAL-42 2018 chrX 22697479 22697510 chrX 22701796 22701827 Juan 11 4317 6.0 4.0 5.0 1.8 4348 chrX 22697479 intron CR44997 + chrX 22699653 intron CR44997 + chrX 22701827 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-42 2019 chrX 22798759 22798801 chrX 22798896 22798938 12 134 2.5 6.0 4.2 2.3 179 chrX 22798759 intergenic not near genes chrX 22798848 intergenic not near genes chrX 22798938 intergenic not near genes chrX_12_22795001 chrX_22795001 RAL-42 2020 chrX 22811984 22812002 chrX 22816777 22816795 F-element 5 4793 10.5 8.0 9.2 0.5 4811 chrX 22811984 intergenic CG12446 - chrX 22814390 intergenic not near genes chrX 22816795 intergenic not near genes chrX_5_22810001 chrX_22810001 RAL-42 2021 chrX 22987083 22987129 chrX 22989762 22989780 Burdock 20 2672 3.5 6.0 4.8 3.4 2697 chrX 22987083 intron,intron stnA -,stnB - chrX 22988432 intron,intron stnA -,stnB - chrX 22989780 intron,intron stnA -,stnB - chrX_20_22985001 chrX_22985001 RAL-42 2022 chrX 22992381 22992414 chrX 22992532 22992562 6 150 4.5 5.0 4.8 1.0 181 chrX 22992381 intron,intron stnA -,stnB - chrX 22992472 intron,intron stnA -,stnB - chrX 22992562 3` UTR,exon stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-42 2023 chrX 22996296 22996341 chrX 23003548 23003553 roo 14 7249 3.5 3.0 3.2 3.3 7257 chrX 22996296 intron,intron stnA -,stnB - chrX 22999924 intron,intron stnA -,stnB - chrX 23003553 intron,intron stnA -,stnB - chrX_14_22995001 chrX_22995001 RAL-42 2024 chrX 23036368 23036408 chrX 23037789 23037829 pogo 6 1421 1.0 2.0 1.5 2.4 1461 chrX 23036368 intron CG12061 + chrX 23037098 intron CG12061 + chrX 23037829 intron CG12061 + chrX_6_23035001 chrX_23035001 RAL-42 2025 chrY 975796 975817 chrY 975896 975913 5 98 68.0 76.0 72.0 0.1 117 chrY 975796 intergenic not near genes chrY 975854 intergenic not near genes chrY 975913 intergenic not near genes chrY_5_975001 chrY_975001 RAL-42 2026 chrY 1419883 1419902 chrY 1420157 1420176 8 271 8.0 12.5 10.2 0.7 293 chrY 1419883 intergenic not near genes chrY 1420030 intergenic not near genes chrY 1420176 intergenic not near genes chrY_8_1420001 chrY_1420001 RAL-42