SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	686917	686952	chr2L	695957	695991	roo	5	9034	1.5	1.5	1.5	2.0	9074	chr2L	686917	intron	ds -	chr2L	691454	intron	ds -	chr2L	695991	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-41
9	chr2L	976883	976909	chr2L	984519	984544	roo	4	7636	1.5	1.0	1.2	1.8	7661	chr2L	976883	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984544	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-41
12	chr2L	1220137	1220160	chr2L	1227602	1227616	blood	7	7464	1.5	2.0	1.8	2.5	7479	chr2L	1220137	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227616	intron	CG42329 +	chr2L_7_1220001	chr2L_1220001	RAL-41
16	chr2L	1570687	1570712	chr2L	1573559	1573584	F-element	4	2872	6.0	3.5	4.8	0.7	2897	chr2L	1570687	intron	haf +	chr2L	1572136	intron	haf +	chr2L	1573584	intron	haf +	chr2L_4_1570001	chr2L_1570001	RAL-41
21	chr2L	1711358	1711387	chr2L	1711680	1711711	mdg3	7	324	3.0	2.5	2.8	1.8	353	chr2L	1711358	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711534	3` UTR	frtz -	chr2L	1711711	3` UTR	frtz -	chr2L_7_1710001	chr2L_1710001	RAL-41
28	chr2L	2100381	2100407	chr2L	2109529	2109555	roo	8	9150	1.5	2.0	1.8	2.9	9174	chr2L	2100381	intron	dpr3 -	chr2L	2104968	intron	dpr3 -	chr2L	2109555	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	RAL-41
33	chr2L	2661197	2661233	chr2L	2663035	2663070	I-element	6	1836	2.0	2.5	2.2	1.9	1873	chr2L	2661197	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	RAL-41
36	chr2L	2933304	2933324	chr2L	2935478	2935500	pogo	4	2176	1.5	2.0	1.8	1.4	2196	chr2L	2933304	intron	lilli +	chr2L	2934402	intron	lilli +	chr2L	2935500	intron	lilli +	chr2L_4_2930001	chr2L_2930001	RAL-41
38	chr2L	3073038	3073065	chr2L	3078240	3078268	copia	7	5203	1.0	2.0	1.5	2.8	5230	chr2L	3073038	intron	toc -	chr2L	3075653	intron	toc -	chr2L	3078268	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-41
39	chr2L	3251495	3251526	chr2L	3259059	3259091	springer	6	7564	0.5	1.5	1.0	3.0	7596	chr2L	3251495	intergenic	not near genes	chr2L	3255293	intergenic	not near genes	chr2L	3259091	intergenic	not near genes	chr2L_6_3255001	chr2L_3255001	RAL-41
53	chr2L	4601704	4601734	chr2L	4609145	4609175	mdg1	8	7441	0.0	2.0	1.0	4.0	7471	chr2L	4601704	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609175	intron	dp -	chr2L_8_4605001	chr2L_4605001	RAL-41
56	chr2L	4918178	4918197	chr2L	4923250	4923270	jockey	4	5072	3.5	3.0	3.2	1.0	5092	chr2L	4918178	intron	hoe1 -	chr2L	4920724	intron	hoe1 -	chr2L	4923270	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-41
64	chr2L	5342770	5342789	chr2L	5345150	5345169	Doc	4	2379	0.5	2.0	1.2	1.8	2399	chr2L	5342770	intergenic	not near genes	chr2L	5343970	intergenic	not near genes	chr2L	5345169	intergenic	not near genes	chr2L_4_5340001	chr2L_5340001	RAL-41
80	chr2L	6426859	6426887	chr2L	6445119	6445147	roo	8	18259	1.5	4.0	2.8	2.1	18288	chr2L	6426859	3` UTR	CG9527 -	chr2L	6436003	intron	CG9527 -	chr2L	6445147	exon	CG9527 -	chr2L_8_6435001	chr2L_6435001	RAL-41
88	chr2L	7343328	7343358	chr2L	7350444	7350473	roo	6	7115	3.0	1.5	2.2	1.9	7145	chr2L	7343328	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350473	intron	Wnt6 +	chr2L_6_7345001	chr2L_7345001	RAL-41
92	chr2L	7977094	7977112	chr2L	7984069	7984087	297	4	6975	0.0	2.5	1.2	1.8	6993	chr2L	7977094	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984087	intron,5` UTR	Snoo -,CG7231 +	chr2L_4_7980001	chr2L_7980001	RAL-41
98	chr2L	8452420	8452449	chr2L	8461591	8461620	roo	7	9171	0.5	0.5	0.5	4.7	9200	chr2L	8452420	intron	fu12 -	chr2L	8457020	intron	fu12 -	chr2L	8461620	intron	fu12 -	chr2L_7_8455001	chr2L_8455001	RAL-41
99	chr2L	8594465	8594497	chr2L	8601519	8601550	297	6	7051	0.5	2.0	1.2	2.7	7085	chr2L	8594465	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601550	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-41
100	chr2L	8723117	8723148	chr2L	8731493	8731525	Tirant	10	8377	0.5	2.0	1.2	4.5	8408	chr2L	8723117	intron	raw -	chr2L	8727321	intron	raw -	chr2L	8731525	intron	raw -	chr2L_10_8725001	chr2L_8725001	RAL-41
106	chr2L	9000294	9000304	chr2L	9007795	9007814	roo	4	7508	2.5	1.0	1.8	1.4	7520	chr2L	9000294	intergenic	Try29F +	chr2L	9004054	intergenic	not near genes	chr2L	9007814	intergenic	not near genes	chr2L_4_9000001	chr2L_9000001	RAL-41
113	chr2L	9973725	9973759	chr2L	9980843	9980876	HMS-Beagle	12	7117	3.0	2.0	2.5	3.4	7151	chr2L	9973725	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980876	intergenic	not near genes	chr2L_12_9975001	chr2L_9975001	RAL-41
131	chr2L	11614057	11614075	chr2L	11615547	11615568	hopper2	4	1491	4.0	0.0	2.0	1.3	1511	chr2L	11614057	intron	kek2 +	chr2L	11614812	intron	kek2 +	chr2L	11615568	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	RAL-41
148	chr2L	12728923	12728940	chr2L	12729165	12729179	pogo	4	240	2.0	4.0	3.0	1.0	256	chr2L	12728923	intron	MRP +	chr2L	12729051	intron	MRP +	chr2L	12729179	intron	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-41
149	chr2L	12731054	12731093	chr2L	12735821	12735859	F-element	8	4766	0.5	1.5	1.0	4.0	4805	chr2L	12731054	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735859	intron	MRP +	chr2L_8_12730001	chr2L_12730001	RAL-41
150	chr2L	12739173	12739206	chr2L	12743954	12743987	Doc	9	4780	1.0	2.5	1.8	3.2	4814	chr2L	12739173	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743987	exon	MRP +	chr2L_9_12740001	chr2L_12740001	RAL-41
152	chr2L	12861693	12861728	chr2L	12863160	12863182	hobo	8	1462	1.0	0.5	0.8	4.4	1489	chr2L	12861693	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_8_12860001	chr2L_12860001	RAL-41
153	chr2L	12933848	12933882	chr2L	12941315	12941342	blood	11	7466	1.5	2.0	1.8	3.9	7494	chr2L	12933848	intergenic	not near genes	chr2L	12937595	intergenic	not near genes	chr2L	12941342	intergenic	not near genes	chr2L_11_12935001	chr2L_12935001	RAL-41
158	chr2L	13405649	13405677	chr2L	13410446	13410474	Doc	6	4797	3.0	3.0	3.0	1.5	4825	chr2L	13405649	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_6_13405001	chr2L_13405001	RAL-41
159	chr2L	13449463	13449494	chr2L	13456899	13456923	Quasimodo	7	7434	2.0	2.5	2.2	2.2	7460	chr2L	13449463	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453193	intron	CG42784 +	chr2L	13456923	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	RAL-41
160	chr2L	13481447	13481470	chr2L	13482054	13482077	jockey	9	607	3.5	0.5	2.0	3.0	630	chr2L	13481447	intron	CG42784 +	chr2L	13481762	intron	CG42784 +	chr2L	13482077	intron	CG42784 +	chr2L_9_13480001	chr2L_13480001	RAL-41
176	chr2L	14803879	14803913	chr2L	14809082	14809116	copia	10	5201	1.0	1.5	1.2	4.5	5237	chr2L	14803879	intergenic	not near genes	chr2L	14806498	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_10_14805001	chr2L_14805001	RAL-41
177	chr2L	14889952	14889985	chr2L	14890377	14890410	jockey	7	425	0.5	3.0	1.8	2.5	458	chr2L	14889952	intergenic	not near genes	chr2L	14890181	intergenic	not near genes	chr2L	14890410	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	RAL-41
183	chr2L	15586413	15586437	chr2L	15593465	15593489	297	5	7052	0.0	2.5	1.2	2.3	7076	chr2L	15586413	intergenic	not near genes	chr2L	15589951	intergenic	not near genes	chr2L	15593489	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-41
185	chr2L	16071771	16071771	chr2L	16217659	16217660	copia	10	145889	11.0	12.0	11.5	0.8	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-41
187	chr2L	16141171	16141191	chr2L	16146378	16146398	copia	6	5207	0.0	2.0	1.0	3.0	5227	chr2L	16141171	intergenic	not near genes	chr2L	16143784	intergenic	not near genes	chr2L	16146398	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-41
189	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	9	145889	11.0	12.0	11.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_9_16140001	chr2L_16140001	RAL-41
190	chr2L	16280266	16280274	chr2L	16281437	16281445	1360	4	1170	3.5	5.5	4.5	0.7	1179	chr2L	16280266	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281445	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-41
200	chr2L	16958108	16958127	chr2L	16962895	16962911	Doc	5	4786	1.0	2.0	1.5	2.0	4803	chr2L	16958108	intergenic	not near genes	chr2L	16960510	intergenic	not near genes	chr2L	16962911	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-41
203	chr2L	17273198	17273223	chr2L	17277980	17278006	F-element	9	4781	2.5	1.0	1.8	3.2	4808	chr2L	17273198	intergenic	not near genes	chr2L	17275602	intergenic	not near genes	chr2L	17278006	intergenic	not near genes	chr2L_9_17275001	chr2L_17275001	RAL-41
212	chr2L	18051877	18051892	chr2L	18061024	18061039	roo	4	9147	5.5	2.0	3.8	0.8	9162	chr2L	18051877	intron	rdo +	chr2L	18056458	intron	rdo +	chr2L	18061039	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-41
217	chr2L	18408024	18408053	chr2L	18412808	18412836	Doc	5	4783	1.0	0.0	0.5	3.3	4812	chr2L	18408024	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412836	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	RAL-41
232	chr2L	19345025	19345045	chr2L	19357233	19357253	blood	5	12208	0.5	1.5	1.0	2.5	12228	chr2L	19345025	intron	dnt -	chr2L	19351139	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-41
238	chr2L	19620095	19620131	chr2L	19621084	19621104	jockey	11	987	2.0	3.5	2.8	2.9	1009	chr2L	19620095	intron	Lar +	chr2L	19620600	intron	Lar +	chr2L	19621104	intron	Lar +	chr2L_11_19620001	chr2L_19620001	RAL-41
240	chr2L	19703543	19703562	chr2L	19712679	19712698	roo	5	9136	5.0	4.0	4.5	0.9	9155	chr2L	19703543	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712698	intron	Lar +	chr2L_5_19705001	chr2L_19705001	RAL-41
245	chr2L	20005876	20005900	chr2L	20010950	20010976	flea	4	5075	0.0	2.5	1.2	1.8	5100	chr2L	20005876	intron	CG43861 -	chr2L	20008426	intron	CG43861 -	chr2L	20010976	intron	CG43861 -	chr2L_4_20005001	chr2L_20005001	RAL-41
247	chr2L	20272119	20272127	chr2L	20282829	20282838	copia	4	10711	1.5	0.5	1.0	2.0	10719	chr2L	20272119	intergenic	not near genes	chr2L	20277478	intergenic	not near genes	chr2L	20282838	intergenic	not near genes	chr2L_4_20275001	chr2L_20275001	RAL-41
248	chr2L	20303162	20303185	chr2L	20310630	20310653	blood	4	7468	0.0	1.0	0.5	2.7	7491	chr2L	20303162	intergenic	not near genes	chr2L	20306908	intergenic	not near genes	chr2L	20310653	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-41
250	chr2L	20568661	20568682	chr2L	20569051	20569069	X-element	4	389	1.0	2.0	1.5	1.6	408	chr2L	20568661	intron	CR45347 +	chr2L	20568865	intron	CR45347 +	chr2L	20569069	intron	CR45347 +	chr2L_4_20565001	chr2L_20565001	RAL-41
253	chr2L	21020280	21020293	chr2L	21023956	21023969	NOF	4	3676	4.5	2.0	3.2	1.0	3689	chr2L	21020280	intron	CG42238 -	chr2L	21022124	intron	CG42238 -	chr2L	21023969	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-41
254	chr2L	21041137	21041166	chr2L	21049398	21049427	Tirant	5	8260	0.0	1.0	0.5	3.3	8290	chr2L	21041137	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_5_21045001	chr2L_21045001	RAL-41
257	chr2L	21981692	21981716	chr2L	21990856	21990881	roo	4	9165	1.0	4.0	2.5	1.1	9189	chr2L	21981692	exon	CG2528 -	chr2L	21986286	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_4_21985001	chr2L_21985001	RAL-41
261	chr2L	22679806	22679825	chr2L	22684578	22684597	F-element	5	4771	0.5	2.5	1.5	2.0	4791	chr2L	22679806	intron	CG40006 -	chr2L	22682202	intron	CG40006 -	chr2L	22684597	intron	CG40006 -	chr2L_5_22680001	chr2L_22680001	RAL-41
272	chr2R	6096714	6096751	chr2R	6101912	6101926	BS	7	5187	4.0	2.0	3.0	1.8	5212	chr2R	6096714	intron	EcR -	chr2R	6099320	intron	EcR -	chr2R	6101926	intron	EcR -	chr2R_7_6095001	chr2R_6095001	RAL-41
276	chr2R	6494530	6494550	chr2R	6499288	6499312	F-element	5	4761	0.5	1.5	1.0	2.5	4782	chr2R	6494530	intergenic	not near genes	chr2R	6496921	intergenic	not near genes	chr2R	6499312	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	RAL-41
279	chr2R	7235820	7235852	chr2R	7240912	7240944	jockey	11	5091	2.0	0.5	1.2	5.0	5124	chr2R	7235820	intergenic	not near genes	chr2R	7238382	intergenic	not near genes	chr2R	7240944	intergenic	not near genes	chr2R_11_7235001	chr2R_7235001	RAL-41
284	chr2R	7869185	7869210	chr2R	7873971	7873975	Doc	6	4782	5.0	1.5	3.2	1.4	4790	chr2R	7869185	intron	Dgk -	chr2R	7871580	intron	Dgk -	chr2R	7873975	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-41
288	chr2R	8160941	8160951	chr2R	8161031	8161038	1360	4	89	1.5	9.0	5.2	0.6	97	chr2R	8160941	intron	CG8708 -	chr2R	8160990	intron	CG8708 -	chr2R	8161038	intron	CG8708 -	chr2R_4_8160001	chr2R_8160001	RAL-41
290	chr2R	8330863	8330881	chr2R	8331349	8331367	roo	4	486	1.5	2.5	2.0	1.3	504	chr2R	8330863	intron	pdm3 +	chr2R	8331115	intron	pdm3 +	chr2R	8331367	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-41
291	chr2R	8398210	8398244	chr2R	8402991	8403025	Doc	6	4781	3.0	1.0	2.0	2.0	4815	chr2R	8398210	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403025	intron	CG2121 -	chr2R_6_8400001	chr2R_8400001	RAL-41
294	chr2R	8722763	8722794	chr2R	8723004	8723032	pogo	9	239	2.0	1.0	1.5	3.6	269	chr2R	8722763	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723032	intron	CG14767 -	chr2R_9_8720001	chr2R_8720001	RAL-41
298	chr2R	9151311	9151324	chr2R	9157781	9157794	Burdock	4	6470	1.5	2.0	1.8	1.4	6483	chr2R	9151311	3` UTR	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157794	intergenic	CG8008 -	chr2R_4_9150001	chr2R_9150001	RAL-41
304	chr2R	9480075	9480099	chr2R	9490606	9490628	roo	5	10530	1.0	0.5	0.8	2.8	10553	chr2R	9480075	intergenic	not near genes	chr2R	9485352	intergenic	not near genes	chr2R	9490628	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-41
307	chr2R	10005849	10005882	chr2R	10007014	10007030	1360	8	1162	1.0	1.5	1.2	3.6	1181	chr2R	10005849	intron	Pka-R2 -	chr2R	10006440	intron	Pka-R2 -	chr2R	10007030	intron	Pka-R2 -	chr2R_8_10005001	chr2R_10005001	RAL-41
316	chr2R	10948030	10948060	chr2R	10955575	10955610	17.6	7	7549	0.5	3.0	1.8	2.5	7580	chr2R	10948030	intergenic	not near genes	chr2R	10951820	intergenic	not near genes	chr2R	10955610	intergenic	not near genes	chr2R_7_10950001	chr2R_10950001	RAL-41
332	chr2R	12501689	12501722	chr2R	12503851	12503877	Rt1c	4	2160	1.0	2.5	1.8	1.4	2188	chr2R	12501689	intron	fdl -	chr2R	12502783	intron	fdl -	chr2R	12503877	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-41
334	chr2R	12789299	12789323	chr2R	12797659	12797682	roo	4	8361	1.0	2.5	1.8	1.4	8383	chr2R	12789299	intron,3` UTR	sca +,CR45137 -	chr2R	12793490	intron,intron	sca +,CR45137 -	chr2R	12797682	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-41
335	chr2R	12819444	12819474	chr2R	12824516	12824547	jockey	4	5072	3.0	2.5	2.8	1.1	5103	chr2R	12819444	intergenic	not near genes	chr2R	12821996	intergenic	not near genes	chr2R	12824547	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-41
337	chr2R	13136836	13136863	chr2R	13141634	13141661	Doc	6	4796	4.0	2.5	3.2	1.4	4825	chr2R	13136836	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141661	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-41
340	chr2R	13580499	13580525	chr2R	13580849	13580875	jockey	4	348	3.0	3.0	3.0	1.0	376	chr2R	13580499	3` UTR	CG6191 -	chr2R	13580687	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580875	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-41
346	chr2R	14497388	14497419	chr2R	14498554	14498580	1360	6	1165	1.0	1.0	1.0	3.0	1192	chr2R	14497388	3` UTR	Cpsf160 -	chr2R	14497984	intron	Cpsf160 -	chr2R	14498580	3` UTR	Cpsf160 -	chr2R_6_14495001	chr2R_14495001	RAL-41
352	chr2R	15004729	15004760	chr2R	15005058	15005089	jockey	4	329	1.5	1.0	1.2	1.8	360	chr2R	15004729	intergenic	not near genes	chr2R	15004909	intergenic	not near genes	chr2R	15005089	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	RAL-41
353	chr2R	15015459	15015485	chr2R	15022882	15022908	mdg1	8	7423	2.0	2.0	2.0	2.7	7449	chr2R	15015459	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022908	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-41
355	chr2R	15119326	15119349	chr2R	15127807	15127830	Tirant	5	8480	7.0	3.0	5.0	0.8	8504	chr2R	15119326	intron	chn +	chr2R	15123578	intron	chn +	chr2R	15127830	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-41
363	chr2R	16539641	16539671	chr2R	16544847	16544880	copia	8	5207	0.0	0.5	0.2	6.7	5239	chr2R	16539641	intergenic	not near genes	chr2R	16542260	intergenic	not near genes	chr2R	16544880	intergenic	not near genes	chr2R_8_16540001	chr2R_16540001	RAL-41
369	chr2R	17176357	17176389	chr2R	17182546	17182579	diver	8	6188	1.5	1.0	1.2	3.6	6222	chr2R	17176357	intergenic	not near genes	chr2R	17179468	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	RAL-41
370	chr2R	17236514	17236528	chr2R	17241717	17241732	copia	4	5204	1.5	2.5	2.0	1.3	5218	chr2R	17236514	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241732	intron	mbl +	chr2R_4_17235001	chr2R_17235001	RAL-41
376	chr2R	17784025	17784056	chr2R	17784266	17784296	pogo	8	241	6.0	4.5	5.2	1.3	271	chr2R	17784025	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784296	intergenic	mir-31a -	chr2R_8_17780001	chr2R_17780001	RAL-41
383	chr2R	18590868	18590895	chr2R	18600019	18600046	roo	6	9152	4.0	2.0	3.0	1.5	9178	chr2R	18590868	intron	GEFmeso -	chr2R	18595457	intron	GEFmeso -	chr2R	18600046	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-41
392	chr2R	19776596	19776630	chr2R	19779918	19779952	jockey	6	3323	2.0	2.0	2.0	2.0	3356	chr2R	19776596	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-41
394	chr2R	19914846	19914862	chr2R	19922258	19922274	mdg1	5	7412	2.0	1.5	1.8	1.8	7428	chr2R	19914846	intergenic	not near genes	chr2R	19918560	intergenic	not near genes	chr2R	19922274	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-41
396	chr2R	19957433	19957447	chr2R	19962635	19962649	copia	5	5202	2.5	1.0	1.8	1.8	5216	chr2R	19957433	intergenic	CG44623 +	chr2R	19960041	intergenic	not near genes	chr2R	19962649	intergenic	not near genes	chr2R_5_19960001	chr2R_19960001	RAL-41
409	chr2R	21151122	21151145	chr2R	21153755	21153778	opus	9	2631	2.0	2.5	2.2	2.8	2656	chr2R	21151122	intron	CG30389 -	chr2R	21152450	intron	CG30389 -	chr2R	21153778	intron	CG30389 -	chr2R_9_21150001	chr2R_21150001	RAL-41
415	chr2R	21738279	21738284	chr2R	21747439	21747444	roo	4	9160	4.5	2.0	3.2	1.0	9165	chr2R	21738279	intergenic	not near genes	chr2R	21742862	intergenic	not near genes	chr2R	21747444	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-41
416	chr2R	21738287	21738308	chr2R	21747437	21747468	roo	4	9153	4.0	2.0	3.0	1.0	9181	chr2R	21738287	intergenic	not near genes	chr2R	21742878	intergenic	not near genes	chr2R	21747468	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-41
417	chr2R	21753083	21753113	chr2R	21753568	21753598	roo	6	485	0.5	3.0	1.8	2.1	515	chr2R	21753083	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753598	intergenic	not near genes	chr2R_6_21750001	chr2R_21750001	RAL-41
418	chr2R	21809532	21809557	chr2R	21817770	21817797	roo	7	8240	2.5	1.0	1.8	2.5	8265	chr2R	21809532	intergenic	not near genes	chr2R	21813664	intergenic	not near genes	chr2R	21817797	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-41
423	chr2R	22349690	22349715	chr2R	22351474	22351499	jockey	6	1782	6.0	2.5	4.2	1.2	1809	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350594	intron	Liprin-gamma -	chr2R	22351499	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-41
424	chr2R	22360381	22360397	chr2R	22360814	22360830	jockey	4	432	5.0	0.5	2.8	1.1	449	chr2R	22360381	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-41
426	chr2R	22525759	22525774	chr2R	22529318	22529333	jockey	4	3559	3.0	2.0	2.5	1.1	3574	chr2R	22525759	intron	px -	chr2R	22527546	intron	px -	chr2R	22529333	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-41
430	chr2R	22774964	22774979	chr2R	22775380	22775398	jockey	4	418	4.5	2.5	3.5	0.9	434	chr2R	22774964	intron	CG42260 -	chr2R	22775181	intron	CG42260 -	chr2R	22775398	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-41
438	chr2R	23529576	23529606	chr2R	23537151	23537182	412	8	7571	4.5	5.0	4.8	1.4	7606	chr2R	23529576	intron	bw -	chr2R	23533379	intron	bw -	chr2R	23537182	exon	bw -	chr2R_8_23530001	chr2R_23530001	RAL-41
443	chr2R	23914326	23914329	chr2R	23921923	23921948	412	4	7609	1.5	3.0	2.2	1.2	7622	chr2R	23914326	exon	kcc +	chr2R	23918137	intron	kcc +	chr2R	23921948	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-41
446	chr2R	24147081	24147094	chr2R	24154655	24154662	412	5	7572	2.0	5.0	3.5	1.1	7581	chr2R	24147081	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154662	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-41
447	chr2R	24177239	24177264	chr2R	24184721	24184749	412	7	7484	1.5	0.5	1.0	3.5	7510	chr2R	24177239	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184749	3` UTR	Nop60B +	chr2R_7_24180001	chr2R_24180001	RAL-41
455	chr2R	24647574	24647613	chr2R	24655145	24655165	412	7	7557	0.0	1.0	0.5	4.7	7591	chr2R	24647574	intergenic	not near genes	chr2R	24651370	intergenic	not near genes	chr2R	24655165	intergenic	not near genes	chr2R_7_24650001	chr2R_24650001	RAL-41
458	chr2R	24727885	24727904	chr2R	24735393	24735411	mdg1	4	7508	4.5	3.5	4.0	0.8	7526	chr2R	24727885	intron	Mid1 -	chr2R	24731648	intron	Mid1 -	chr2R	24735411	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-41
461	chr2R	24763610	24763642	chr2R	24765586	24765618	G2	10	1972	2.5	4.5	3.5	2.2	2008	chr2R	24763610	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765618	exon	CG3894 +	chr2R_10_24760001	chr2R_24760001	RAL-41
471	chr3L	110211	110242	chr3L	119378	119409	roo	5	9167	1.0	1.5	1.2	2.3	9198	chr3L	110211	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119409	intergenic	not near genes	chr3L_5_110001	chr3L_110001	RAL-41
474	chr3L	402697	402717	chr3L	409750	409764	297	7	7052	1.5	4.0	2.8	1.8	7067	chr3L	402697	intergenic	not near genes	chr3L	406230	intergenic	not near genes	chr3L	409764	intergenic	not near genes	chr3L_7_405001	chr3L_405001	RAL-41
481	chr3L	789917	789946	chr3L	790402	790431	roo	6	484	1.0	2.0	1.5	2.4	514	chr3L	789917	intergenic	not near genes	chr3L	790174	intergenic	not near genes	chr3L	790431	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-41
482	chr3L	858006	858029	chr3L	866485	866508	Tirant	8	8474	2.0	1.5	1.8	2.9	8502	chr3L	858006	intergenic	not near genes	chr3L	862257	intergenic	not near genes	chr3L	866508	5` UTR	CG12502 +	chr3L_8_860001	chr3L_860001	RAL-41
485	chr3L	925175	925194	chr3L	932601	932620	mdg1	4	7426	1.0	1.0	1.0	2.0	7445	chr3L	925175	intron	Glut1 +	chr3L	928898	intron	Glut1 +	chr3L	932620	intron	Glut1 +	chr3L_4_925001	chr3L_925001	RAL-41
490	chr3L	1219600	1219620	chr3L	1227333	1227352	412	6	7732	5.5	3.5	4.5	1.1	7752	chr3L	1219600	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227352	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-41
492	chr3L	1506010	1506032	chr3L	1513606	1513627	17.6	4	7596	1.5	4.0	2.8	1.1	7617	chr3L	1506010	intron,intron	Psa +,cue -	chr3L	1509818	intron,intron	Psa +,cue -	chr3L	1513627	intron,intron	Psa +,cue -	chr3L_4_1505001	chr3L_1505001	RAL-41
501	chr3L	3281440	3281474	chr3L	3281936	3281970	Doc	6	496	3.0	3.0	3.0	1.5	530	chr3L	3281440	intron	CG12017 +	chr3L	3281705	intron	CG12017 +	chr3L	3281970	intron	CG12017 +	chr3L_6_3280001	chr3L_3280001	RAL-41
502	chr3L	3475085	3475095	chr3L	3475528	3475537	jockey	4	443	2.5	4.0	3.2	1.0	452	chr3L	3475085	intron	CG42324 +	chr3L	3475311	intron	CG42324 +	chr3L	3475537	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-41
503	chr3L	3601302	3601328	chr3L	3606613	3606639	copia	5	5311	1.0	3.5	2.2	1.6	5337	chr3L	3601302	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-41
507	chr3L	3833745	3833766	chr3L	3833986	3834007	pogo	4	240	2.0	1.0	1.5	1.6	262	chr3L	3833745	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834007	intron	enc +	chr3L_4_3830001	chr3L_3830001	RAL-41
516	chr3L	5045464	5045484	chr3L	5050242	5050265	Doc	4	4780	1.5	1.5	1.5	1.6	4801	chr3L	5045464	intron	Con -	chr3L	5047864	intron	Con -	chr3L	5050265	intron	Con -	chr3L_4_5045001	chr3L_5045001	RAL-41
521	chr3L	5910031	5910059	chr3L	5910272	5910300	pogo	5	241	0.5	3.5	2.0	1.7	269	chr3L	5910031	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910300	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-41
522	chr3L	5926329	5926340	chr3L	5926514	5926530	BS	5	189	2.0	2.5	2.2	1.6	201	chr3L	5926329	intron	Vap-33B +	chr3L	5926430	intron	Vap-33B +	chr3L	5926530	intron	Vap-33B +	chr3L_5_5925001	chr3L_5925001	RAL-41
525	chr3L	6001679	6001714	chr3L	6004379	6004414	jockey	9	2700	0.5	1.0	0.8	5.0	2735	chr3L	6001679	intron	PVRAP +	chr3L	6003046	intron	PVRAP +	chr3L	6004414	intron	PVRAP +	chr3L_9_6000001	chr3L_6000001	RAL-41
528	chr3L	6220914	6220947	chr3L	6230066	6230097	roo	7	9151	0.5	2.0	1.2	3.2	9183	chr3L	6220914	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230097	intergenic	not near genes	chr3L_7_6225001	chr3L_6225001	RAL-41
529	chr3L	6335017	6335040	chr3L	6335487	6335494	297	6	467	0.0	2.0	1.0	3.0	477	chr3L	6335017	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335494	intron	CG13300 -	chr3L_6_6335001	chr3L_6335001	RAL-41
530	chr3L	6405666	6405690	chr3L	6432130	6432153	roo	4	26464	1.5	0.5	1.0	2.0	26487	chr3L	6405666	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432153	intron	CG42747 +	chr3L_4_6415001	chr3L_6415001	RAL-41
532	chr3L	6887521	6887550	chr3L	6895013	6895042	roo	6	7492	2.0	2.0	2.0	2.0	7521	chr3L	6887521	intergenic	not near genes	chr3L	6891282	intergenic	not near genes	chr3L	6895042	intergenic	not near genes	chr3L_6_6890001	chr3L_6890001	RAL-41
549	chr3L	8019731	8019736	chr3L	8024116	8024148	NOF	4	4406	0.0	0.0	0.0	4.0	4417	chr3L	8019731	intron	nmo +	chr3L	8021940	intron	nmo +	chr3L	8024148	intron	nmo +	chr3L_4_8020001	chr3L_8020001	RAL-41
556	chr3L	8791275	8791295	chr3L	8796693	8796712	I-element	6	5419	4.5	0.0	2.2	1.9	5437	chr3L	8791275	exon	Fhos +	chr3L	8793994	intron	Fhos +	chr3L	8796712	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-41
560	chr3L	9076928	9076950	chr3L	9084488	9084509	412	5	7559	3.0	2.0	2.5	1.4	7581	chr3L	9076928	exon	Tequila +	chr3L	9080718	intron	Tequila +	chr3L	9084509	exon	Tequila +	chr3L_5_9080001	chr3L_9080001	RAL-41
561	chr3L	9219242	9219274	chr3L	9219914	9219926	jockey	7	668	3.0	2.5	2.8	1.8	684	chr3L	9219242	intergenic	not near genes	chr3L	9219584	intergenic	not near genes	chr3L	9219926	intergenic	not near genes	chr3L_7_9215001	chr3L_9215001	RAL-41
562	chr3L	9270629	9270648	chr3L	9278380	9278397	roo	4	7750	4.0	3.5	3.8	0.8	7768	chr3L	9270629	intron	GluRIB +	chr3L	9274513	intron	GluRIB +	chr3L	9278397	exon	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-41
564	chr3L	9571913	9571937	chr3L	9572261	9572285	jockey	4	348	0.0	4.0	2.0	1.3	372	chr3L	9571913	intron	CG42673 +	chr3L	9572099	intron	CG42673 +	chr3L	9572285	intron	CG42673 +	chr3L_4_9570001	chr3L_9570001	RAL-41
565	chr3L	9575906	9575945	chr3L	9580984	9580999	jockey	10	5074	3.5	2.5	3.0	2.5	5093	chr3L	9575906	intron	CG42673 +	chr3L	9578452	intron	CG42673 +	chr3L	9580999	intron	CG42673 +	chr3L_10_9575001	chr3L_9575001	RAL-41
575	chr3L	10414947	10414977	chr3L	10417318	10417349	Doc	10	2368	0.0	1.5	0.8	5.6	2402	chr3L	10414947	intergenic	CG12362 +	chr3L	10416148	intergenic	not near genes	chr3L	10417349	intergenic	not near genes	chr3L_10_10415001	chr3L_10415001	RAL-41
581	chr3L	11087060	11087082	chr3L	11088849	11088866	S-element	7	1788	2.5	1.0	1.8	2.5	1806	chr3L	11087060	intron	JIL-1 -	chr3L	11087963	intron	JIL-1 -	chr3L	11088866	intron	JIL-1 -	chr3L_7_11085001	chr3L_11085001	RAL-41
588	chr3L	11723086	11723116	chr3L	11727881	11727911	Doc	5	4795	3.0	1.5	2.2	1.6	4825	chr3L	11723086	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727911	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	RAL-41
597	chr3L	12874949	12874954	chr3L	12877240	12877246	jockey	4	2292	2.0	0.5	1.2	1.8	2297	chr3L	12874949	intergenic	not near genes	chr3L	12876098	intergenic	not near genes	chr3L	12877246	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	RAL-41
599	chr3L	12957793	12957817	chr3L	12962267	12962299	copia	5	4480	0.5	3.0	1.8	1.8	4506	chr3L	12957793	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962299	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	RAL-41
612	chr3L	14245572	14245580	chr3L	14245666	14245674	1360	4	94	1.5	1.0	1.2	1.8	102	chr3L	14245572	3` UTR	CR44561 -	chr3L	14245623	3` UTR	CR44561 -	chr3L	14245674	3` UTR	CR44561 -	chr3L_4_14245001	chr3L_14245001	RAL-41
614	chr3L	14312029	14312054	chr3L	14316838	14316862	X-element	8	4811	1.5	1.5	1.5	3.2	4833	chr3L	14312029	exon	fz +	chr3L	14314446	intron	fz +	chr3L	14316862	intron	fz +	chr3L_8_14310001	chr3L_14310001	RAL-41
617	chr3L	14468448	14468473	chr3L	14473654	14473678	copia	4	5206	0.5	1.0	0.8	2.2	5230	chr3L	14468448	intron	bbg -	chr3L	14471063	intron	bbg -	chr3L	14473678	intron	bbg -	chr3L_4_14470001	chr3L_14470001	RAL-41
620	chr3L	14721185	14721208	chr3L	14723025	14723050	Rt1c	4	1842	2.0	2.5	2.2	1.2	1865	chr3L	14721185	intron	ome +	chr3L	14722118	intron	ome +	chr3L	14723050	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-41
628	chr3L	15423760	15423780	chr3L	15426604	15426623	opus	6	2844	1.5	1.0	1.2	2.7	2863	chr3L	15423760	intergenic	not near genes	chr3L	15425192	intergenic	not near genes	chr3L	15426623	intergenic	not near genes	chr3L_6_15425001	chr3L_15425001	RAL-41
633	chr3L	15554924	15554947	chr3L	15556711	15556734	S-element	6	1787	0.5	3.5	2.0	2.0	1810	chr3L	15554924	intron	AGO2 +	chr3L	15555829	intron	AGO2 +	chr3L	15556734	intron	AGO2 +	chr3L_6_15555001	chr3L_15555001	RAL-41
638	chr3L	15929197	15929228	chr3L	15938344	15938375	roo	6	9147	2.0	0.5	1.2	2.7	9178	chr3L	15929197	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938375	intron	Pka-C3 -	chr3L_6_15930001	chr3L_15930001	RAL-41
642	chr3L	16184106	16184130	chr3L	16188925	16188938	X-element	6	4817	2.0	2.0	2.0	2.0	4832	chr3L	16184106	intergenic	not near genes	chr3L	16186522	intergenic	not near genes	chr3L	16188938	intergenic	not near genes	chr3L_6_16185001	chr3L_16185001	RAL-41
643	chr3L	16443855	16443873	chr3L	16446195	16446210	Doc	6	2339	0.5	2.5	1.5	2.4	2355	chr3L	16443855	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446210	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-41
645	chr3L	16493978	16494011	chr3L	16494494	16494527	jockey	7	515	4.0	3.0	3.5	1.6	549	chr3L	16493978	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494527	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-41
650	chr3L	16684017	16684050	chr3L	16689238	16689270	copia	5	5221	0.5	0.5	0.5	3.3	5253	chr3L	16684017	intron,intron	Lasp -,CG43954 -	chr3L	16686644	intron,intron	Lasp -,CG43954 -	chr3L	16689270	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_5_16685001	chr3L_16685001	RAL-41
651	chr3L	16945731	16945757	chr3L	16954884	16954909	roo	7	9152	4.5	4.0	4.2	1.3	9178	chr3L	16945731	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954909	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	RAL-41
653	chr3L	17085012	17085028	chr3L	17094161	17094177	roo	4	9149	2.5	2.5	2.5	1.1	9165	chr3L	17085012	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094177	intron	Rbp6 -	chr3L_4_17085001	chr3L_17085001	RAL-41
659	chr3L	17516979	17517010	chr3L	17524537	17524566	412	6	7557	0.0	0.5	0.2	5.0	7587	chr3L	17516979	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524566	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-41
669	chr3L	18772410	18772441	chr3L	18781091	18781122	roo	10	8681	2.0	2.5	2.2	3.1	8712	chr3L	18772410	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_10_18775001	chr3L_18775001	RAL-41
671	chr3L	19008859	19008870	chr3L	19009178	19009185	jockey	4	327	3.0	2.5	2.8	1.1	326	chr3L	19008859	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009185	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-41
674	chr3L	19117040	19117075	chr3L	19124487	19124522	mdg1	7	7446	1.0	0.5	0.8	3.9	7482	chr3L	19117040	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_7_19120001	chr3L_19120001	RAL-41
675	chr3L	19208075	19208086	chr3L	19209445	19209455	Doc	5	1371	0.5	4.0	2.2	1.6	1380	chr3L	19208075	intron	fz2 -	chr3L	19208765	intron	fz2 -	chr3L	19209455	intron	fz2 -	chr3L_5_19205001	chr3L_19205001	RAL-41
682	chr3L	20040510	20040535	chr3L	20040928	20040953	invader3	7	418	2.5	1.0	1.8	2.5	443	chr3L	20040510	intergenic	not near genes	chr3L	20040732	intergenic	not near genes	chr3L	20040953	intergenic	not near genes	chr3L_7_20040001	chr3L_20040001	RAL-41
685	chr3L	20113658	20113689	chr3L	20122915	20122946	roo	6	9255	2.0	1.5	1.8	2.1	9288	chr3L	20113658	intergenic	not near genes	chr3L	20118302	intergenic	not near genes	chr3L	20122946	intergenic	not near genes	chr3L_6_20115001	chr3L_20115001	RAL-41
688	chr3L	20257333	20257351	chr3L	20258453	20258467	pogo	9	1119	3.5	1.0	2.2	2.8	1134	chr3L	20257333	intron	rdgC +	chr3L	20257900	intron	rdgC +	chr3L	20258467	intron	rdgC +	chr3L_9_20255001	chr3L_20255001	RAL-41
694	chr3L	20821271	20821307	chr3L	20824740	20824776	NOF	5	3469	0.5	1.5	1.0	2.5	3505	chr3L	20821271	intron	Pka-R1 +	chr3L	20823024	intron	Pka-R1 +	chr3L	20824776	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	RAL-41
697	chr3L	21014919	21014946	chr3L	21023400	21023427	Tirant	5	8476	1.5	3.0	2.2	1.6	8508	chr3L	21014919	intron	skd -	chr3L	21019173	intron	skd -	chr3L	21023427	intron	skd -	chr3L_5_21015001	chr3L_21015001	RAL-41
700	chr3L	21372732	21372751	chr3L	21379240	21379259	McClintock	4	6508	0.5	1.0	0.8	2.2	6527	chr3L	21372732	intergenic	not near genes	chr3L	21375996	intergenic	not near genes	chr3L	21379259	intergenic	not near genes	chr3L_4_21375001	chr3L_21375001	RAL-41
702	chr3L	21498844	21498860	chr3L	21500480	21500494	1360	7	1634	3.5	2.5	3.0	1.8	1650	chr3L	21498844	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500494	intron	Glg1 -	chr3L_7_21495001	chr3L_21495001	RAL-41
708	chr3L	21749330	21749347	chr3L	21754490	21754507	Doc	6	5159	1.5	1.5	1.5	2.4	5177	chr3L	21749330	intron	Syn1 -	chr3L	21751918	intron	Syn1 -	chr3L	21754507	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-41
717	chr3L	22555768	22555803	chr3L	22563238	22563270	blood	5	7467	1.0	0.5	0.8	2.8	7502	chr3L	22555768	intergenic	not near genes	chr3L	22559519	intergenic	not near genes	chr3L	22563270	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-41
718	chr3L	22577624	22577648	chr3L	22582410	22582436	Doc	10	4786	1.5	2.5	2.0	3.3	4812	chr3L	22577624	intergenic	not near genes	chr3L	22580030	intergenic	not near genes	chr3L	22582436	3` UTR	CG14459 -	chr3L_10_22580001	chr3L_22580001	RAL-41
719	chr3L	22617191	22617221	chr3L	22624643	22624673	blood	7	7450	2.0	0.5	1.2	3.2	7482	chr3L	22617191	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624673	intron	CG14459 -	chr3L_7_22620001	chr3L_22620001	RAL-41
731	chr3L	25628497	25628523	chr3L	25633266	25633294	F-element	6	4770	1.5	1.5	1.5	2.4	4797	chr3L	25628497	intron	CG41343 -	chr3L	25630896	intron	CG41343 -	chr3L	25633294	intron	CG41343 -	chr3L_6_25630001	chr3L_25630001	RAL-41
735	chr3R	4408420	4408445	chr3R	4412724	4412749	Juan	4	4303	0.0	3.0	1.5	1.6	4329	chr3R	4408420	intron	CG32944 -	chr3R	4410584	intron	CG32944 -	chr3R	4412749	intron	CG32944 -	chr3R_4_4410001	chr3R_4410001	RAL-41
739	chr3R	4753254	4753268	chr3R	4757557	4757571	F-element	4	4303	4.0	3.5	3.8	0.8	4317	chr3R	4753254	intron,intron	atms +,CG44098 -	chr3R	4755412	intron,intron	atms +,CG44098 -	chr3R	4757571	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-41
742	chr3R	4887486	4887499	chr3R	4894863	4894876	rover	5	7377	2.5	3.5	3.0	1.2	7390	chr3R	4887486	intergenic	not near genes	chr3R	4891181	intergenic	not near genes	chr3R	4894876	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-41
745	chr3R	5045845	5045871	chr3R	5052945	5052973	HMS-Beagle	4	7101	4.5	3.0	3.8	0.8	7128	chr3R	5045845	intron	CR43635 -	chr3R	5049409	intergenic	not near genes	chr3R	5052973	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-41
746	chr3R	5067984	5068010	chr3R	5073501	5073527	mdg3	5	5517	0.5	1.5	1.0	2.5	5543	chr3R	5067984	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073527	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-41
754	chr3R	5746020	5746046	chr3R	5746260	5746287	pogo	6	240	4.5	4.0	4.2	1.2	267	chr3R	5746020	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-41
757	chr3R	5927562	5927583	chr3R	5927801	5927823	pogo	6	240	2.5	3.0	2.8	1.6	261	chr3R	5927562	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927823	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	RAL-41
759	chr3R	6015964	6015982	chr3R	6024444	6024462	Tirant	4	8480	4.0	0.5	2.2	1.2	8498	chr3R	6015964	intergenic	not near genes	chr3R	6020213	intergenic	not near genes	chr3R	6024462	intergenic	not near genes	chr3R_4_6020001	chr3R_6020001	RAL-41
763	chr3R	6175180	6175203	chr3R	6182452	6182461	HMS-Beagle2	6	7270	1.0	3.5	2.2	1.9	7281	chr3R	6175180	intergenic	Osi1 +	chr3R	6178820	intron	CR45194 +	chr3R	6182461	intergenic	CR45194 +	chr3R_6_6175001	chr3R_6175001	RAL-41
765	chr3R	6737500	6737524	chr3R	6739287	6739311	Doc	10	1787	2.5	0.5	1.5	4.0	1811	chr3R	6737500	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739311	intron	pb -	chr3R_10_6735001	chr3R_6735001	RAL-41
776	chr3R	7729467	7729481	chr3R	7737405	7737418	Stalker2	5	7937	3.0	2.0	2.5	1.4	7951	chr3R	7729467	intergenic	not near genes	chr3R	7733442	intergenic	not near genes	chr3R	7737418	intergenic	not near genes	chr3R_5_7730001	chr3R_7730001	RAL-41
779	chr3R	7849659	7849673	chr3R	7850814	7850835	1360	9	1164	1.5	1.5	1.5	3.6	1176	chr3R	7849659	intron	CG34384 +	chr3R	7850247	intron	CG34384 +	chr3R	7850835	intron	CG34384 +	chr3R_9_7850001	chr3R_7850001	RAL-41
782	chr3R	8094417	8094440	chr3R	8099719	8099745	Transpac	6	5304	1.5	1.5	1.5	2.4	5328	chr3R	8094417	intron	CG7900 +	chr3R	8097081	intron	CG7900 +	chr3R	8099745	intron	CG7900 +	chr3R_6_8095001	chr3R_8095001	RAL-41
783	chr3R	8101772	8101793	chr3R	8104855	8104876	G2	4	3083	2.5	1.0	1.8	1.4	3104	chr3R	8101772	exon	CG7900 +	chr3R	8103324	intron	CG7900 +	chr3R	8104876	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-41
786	chr3R	8207554	8207588	chr3R	8208398	8208422	F-element	8	843	0.0	1.0	0.5	5.3	868	chr3R	8207554	intergenic	not near genes	chr3R	8207988	intergenic	not near genes	chr3R	8208422	intergenic	not near genes	chr3R_8_8205001	chr3R_8205001	RAL-41
789	chr3R	8403010	8403037	chr3R	8412175	8412203	roo	15	9164	2.0	1.5	1.8	5.4	9193	chr3R	8403010	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412203	intron	CG45263 -	chr3R_15_8405001	chr3R_8405001	RAL-41
792	chr3R	8570479	8570509	chr3R	8575114	8575114	HMS-Beagle	6	4630	1.5	2.0	1.8	2.1	4635	chr3R	8570479	intergenic	not near genes	chr3R	8572796	intergenic	not near genes	chr3R	8575114	intergenic	not near genes	chr3R_6_8570001	chr3R_8570001	RAL-41
794	chr3R	9278781	9278810	chr3R	9284041	9284067	Rt1a	7	5259	1.5	5.5	3.5	1.6	5286	chr3R	9278781	intergenic	not near genes	chr3R	9281424	intergenic	not near genes	chr3R	9284067	intergenic	not near genes	chr3R_7_9280001	chr3R_9280001	RAL-41
795	chr3R	9319585	9319608	chr3R	9320018	9320040	jockey	4	434	0.5	2.0	1.2	1.8	455	chr3R	9319585	intron	CG8861 -	chr3R	9319812	intron	CG8861 -	chr3R	9320040	intron	CG8861 -	chr3R_4_9315001	chr3R_9315001	RAL-41
815	chr3R	11379236	11379265	chr3R	11388391	11388420	roo	6	9155	1.5	2.5	2.0	2.0	9184	chr3R	11379236	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388420	intron	pros +	chr3R_6_11380001	chr3R_11380001	RAL-41
819	chr3R	11841078	11841096	chr3R	11846250	11846287	BS	6	5187	2.0	1.5	1.8	2.1	5209	chr3R	11841078	intron	CG6959 -	chr3R	11843682	intron	CG6959 -	chr3R	11846287	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	RAL-41
821	chr3R	12022886	12022916	chr3R	12025063	12025093	pogo	6	2175	1.0	1.0	1.0	3.0	2207	chr3R	12022886	intergenic	not near genes	chr3R	12023990	intergenic	not near genes	chr3R	12025093	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-41
824	chr3R	12920163	12920186	chr3R	12925366	12925388	copia	5	5203	1.5	4.0	2.8	1.3	5225	chr3R	12920163	intron	beat-Vb +	chr3R	12922776	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-41
826	chr3R	13135830	13135859	chr3R	13138005	13138034	pogo	6	2175	2.5	1.0	1.8	2.1	2204	chr3R	13135830	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136932	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138034	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13135001	chr3R_13135001	RAL-41
840	chr3R	14021649	14021677	chr3R	14023464	14023494	S-element	5	1813	2.0	0.5	1.2	2.3	1845	chr3R	14021649	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023494	intron	rdx -	chr3R_5_14020001	chr3R_14020001	RAL-41
842	chr3R	14246402	14246418	chr3R	14247893	14247914	jockey	5	1492	0.5	3.0	1.8	1.8	1512	chr3R	14246402	intergenic	not near genes	chr3R	14247158	intergenic	not near genes	chr3R	14247914	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-41
851	chr3R	15041426	15041459	chr3R	15045194	15045221	Doc	4	3766	1.5	0.0	0.8	2.2	3795	chr3R	15041426	intergenic	not near genes	chr3R	15043324	intergenic	not near genes	chr3R	15045221	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	RAL-41
853	chr3R	15079807	15079838	chr3R	15080048	15080079	pogo	8	241	0.5	1.0	0.8	4.4	272	chr3R	15079807	3` UTR	CG6966 -	chr3R	15079943	3` UTR	CG6966 -	chr3R	15080079	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RAL-41
854	chr3R	15132059	15132074	chr3R	15135119	15135134	Juan	6	3060	2.0	5.5	3.8	1.2	3075	chr3R	15132059	intergenic	CG42788 -	chr3R	15133596	intergenic	not near genes	chr3R	15135134	intergenic	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-41
857	chr3R	15601163	15601195	chr3R	15608685	15608717	412	7	7521	3.5	0.0	1.8	2.5	7554	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608717	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-41
858	chr3R	15618731	15618759	chr3R	15626205	15626214	blood	7	7471	0.5	2.5	1.5	2.8	7483	chr3R	15618731	intergenic	not near genes	chr3R	15622472	intergenic	not near genes	chr3R	15626214	intergenic	not near genes	chr3R_7_15620001	chr3R_15620001	RAL-41
869	chr3R	16756327	16756350	chr3R	16762515	16762541	diver	7	6190	2.0	1.5	1.8	2.5	6214	chr3R	16756327	intron	bxd -	chr3R	16759434	intron	bxd -	chr3R	16762541	intron	bxd -	chr3R_7_16755001	chr3R_16755001	RAL-41
872	chr3R	17346698	17346714	chr3R	17348260	17348275	F-element	6	1562	1.0	3.0	2.0	2.0	1577	chr3R	17346698	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348275	intron	beat-IIa -	chr3R_6_17345001	chr3R_17345001	RAL-41
877	chr3R	17638319	17638346	chr3R	17638805	17638832	roo	4	486	2.0	1.5	1.8	1.4	513	chr3R	17638319	intron	CG43175 +	chr3R	17638576	intron	CG43175 +	chr3R	17638832	intron,intron	CG43175 +,CR45222 +	chr3R_4_17635001	chr3R_17635001	RAL-41
878	chr3R	17925853	17925887	chr3R	17927319	17927354	hobo	6	1466	2.5	8.0	5.2	1.0	1501	chr3R	17925853	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_6_17925001	chr3R_17925001	RAL-41
884	chr3R	18606515	18606533	chr3R	18610746	18610764	F-element	6	4231	2.5	1.0	1.8	2.1	4249	chr3R	18606515	intron,intron	qin +,CG14304 -	chr3R	18608640	intron,intron	qin +,CG14304 -	chr3R	18610764	intron,intron	qin +,CG14304 -	chr3R_6_18605001	chr3R_18605001	RAL-41
909	chr3R	21141681	21141699	chr3R	21150153	21150159	Tirant	6	8472	1.5	2.5	2.0	2.0	8478	chr3R	21141681	intron	SNF4Agamma +	chr3R	21145920	intron	SNF4Agamma +	chr3R	21150159	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-41
913	chr3R	21761124	21761150	chr3R	21768516	21768528	mdg1	9	7389	1.5	2.0	1.8	3.2	7404	chr3R	21761124	exon	CG42335 +	chr3R	21764826	intron	CG42335 +	chr3R	21768528	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RAL-41
925	chr3R	22450548	22450579	chr3R	22453188	22453219	NOF	4	2640	2.5	1.5	2.0	1.3	2671	chr3R	22450548	intron	CG34376 +	chr3R	22451884	intron	CG34376 +	chr3R	22453219	intron	CG34376 +	chr3R_4_22450001	chr3R_22450001	RAL-41
937	chr3R	23558402	23558421	chr3R	23560183	23560202	Bari1	4	1781	2.0	1.5	1.8	1.4	1800	chr3R	23558402	intron	beat-IV +	chr3R	23559302	intron	beat-IV +	chr3R	23560202	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-41
939	chr3R	23684694	23684725	chr3R	23685180	23685194	roo	7	480	2.0	2.5	2.2	2.2	500	chr3R	23684694	exon	CG18754 +	chr3R	23684944	intron	CG18754 +	chr3R	23685194	exon	CG18754 +	chr3R_7_23680001	chr3R_23680001	RAL-41
944	chr3R	24072086	24072113	chr3R	24072523	24072551	jockey	6	436	5.0	1.0	3.0	1.5	465	chr3R	24072086	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072551	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-41
945	chr3R	24076914	24076935	chr3R	24078381	24078402	hobo	8	1466	2.0	2.5	2.2	2.5	1488	chr3R	24076914	intron	4EHP -	chr3R	24077658	intron	4EHP -	chr3R	24078402	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-41
947	chr3R	24207212	24207236	chr3R	24212288	24212312	flea	7	5073	3.0	2.0	2.5	2.0	5100	chr3R	24207212	intron	twin -	chr3R	24209762	intron	twin -	chr3R	24212312	intron	twin -	chr3R_7_24205001	chr3R_24205001	RAL-41
950	chr3R	24927133	24927155	chr3R	24931922	24931945	Doc	4	4790	3.0	3.5	3.2	1.0	4812	chr3R	24927133	intergenic	Trf4-2 +	chr3R	24929539	intergenic	not near genes	chr3R	24931945	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-41
955	chr3R	25832695	25832724	chr3R	25841877	25841906	roo	8	9182	3.0	4.5	3.8	1.7	9211	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_8_25835001	chr3R_25835001	RAL-41
966	chr3R	27140521	27140546	chr3R	27148130	27148156	412	11	7610	2.5	2.0	2.2	3.4	7635	chr3R	27140521	intron	CG6051 -	chr3R	27144338	intron	CG6051 -	chr3R	27148156	intron	CG6051 -	chr3R_11_27140001	chr3R_27140001	RAL-41
968	chr3R	27342796	27342826	chr3R	27351377	27351404	Tirant	5	8579	1.0	0.5	0.8	2.8	8608	chr3R	27342796	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351404	intron	CG42534 +	chr3R_5_27345001	chr3R_27345001	RAL-41
977	chr3R	27856757	27856793	chr3R	27858240	27858276	hopper2	13	1482	0.0	1.5	0.8	7.2	1519	chr3R	27856757	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858276	intron	CG34353 -	chr3R_13_27855001	chr3R_27855001	RAL-41
978	chr3R	27862954	27862981	chr3R	27868259	27868277	Transpac	5	5303	1.5	1.5	1.5	2.0	5323	chr3R	27862954	intron	CG34353 -	chr3R	27865616	intron	CG34353 -	chr3R	27868277	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-41
980	chr3R	28068505	28068526	chr3R	28073947	28073967	I-element	5	5442	0.5	2.5	1.5	2.0	5462	chr3R	28068505	intron	CG34362 +	chr3R	28071236	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	RAL-41
982	chr3R	28173673	28173704	chr3R	28181103	28181134	mdg1	5	7430	4.0	2.0	3.0	1.2	7461	chr3R	28173673	intron	CG34354 +	chr3R	28177404	intron	CG34354 +	chr3R	28181134	intron	CG34354 +	chr3R_5_28175001	chr3R_28175001	RAL-41
983	chr3R	28302106	28302129	chr3R	28302545	28302568	jockey	5	438	2.5	2.0	2.2	1.6	462	chr3R	28302106	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302568	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-41
995	chr3R	29079387	29079398	chr3R	29080759	29080770	NOF	4	1372	2.0	1.0	1.5	1.6	1383	chr3R	29079387	intron	CG11873 +	chr3R	29080078	intron	CG11873 +	chr3R	29080770	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-41
1002	chr3R	29406627	29406636	chr3R	29407905	29407906	jockey	5	1280	5.0	3.5	4.2	1.0	1279	chr3R	29406627	intron	Ptp99A +	chr3R	29407266	intron	Ptp99A +	chr3R	29407906	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-41
1008	chr3R	29738264	29738298	chr3R	29739731	29739754	hobo	8	1463	1.0	2.5	1.8	2.9	1490	chr3R	29738264	intergenic	CG1969 +,CG7598 +	chr3R	29739009	intron	CG1969 +	chr3R	29739754	5` UTR	CG1969 +	chr3R_8_29735001	chr3R_29735001	RAL-41
1010	chr3R	29882018	29882053	chr3R	29891175	29891210	roo	7	9156	3.5	2.0	2.8	1.8	9192	chr3R	29882018	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891210	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-41
1016	chr3R	30238774	30238791	chr3R	30239935	30239956	1360	4	1164	0.0	0.0	0.0	4.0	1182	chr3R	30238774	intergenic	not near genes	chr3R	30239365	intergenic	not near genes	chr3R	30239956	intergenic	not near genes	chr3R_4_30235001	chr3R_30235001	RAL-41
1018	chr3R	30375548	30375567	chr3R	30383171	30383190	412	4	7623	2.0	2.5	2.2	1.2	7642	chr3R	30375548	intergenic	not near genes	chr3R	30379369	intergenic	not near genes	chr3R	30383190	intergenic	not near genes	chr3R_4_30375001	chr3R_30375001	RAL-41
1024	chr3R	30679518	30679547	chr3R	30686987	30687016	blood	5	7469	1.0	2.0	1.5	2.0	7498	chr3R	30679518	intergenic	not near genes	chr3R	30683267	intergenic	not near genes	chr3R	30687016	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-41
1025	chr3R	30818812	30818830	chr3R	30820374	30820395	1360	4	1564	3.5	0.0	1.8	1.4	1583	chr3R	30818812	intron	cindr +	chr3R	30819604	intron	cindr +	chr3R	30820395	intron	cindr +	chr3R_4_30815001	chr3R_30815001	RAL-41
1029	chr3R	31074238	31074262	chr3R	31081836	31081860	springer	6	7598	4.5	2.5	3.5	1.3	7622	chr3R	31074238	intron	Sox100B +	chr3R	31078049	intron	Sox100B +	chr3R	31081860	intron	Sox100B +	chr3R_6_31075001	chr3R_31075001	RAL-41
1030	chr3R	31279389	31279409	chr3R	31285564	31285589	diver	6	6182	1.5	2.5	2.0	2.0	6200	chr3R	31279389	intergenic	not near genes	chr3R	31282489	intergenic	not near genes	chr3R	31285589	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-41
1033	chr3R	31413109	31413119	chr3R	31418309	31418319	copia	4	5198	2.5	1.5	2.0	1.3	5210	chr3R	31413109	intron	Gprk2 +	chr3R	31415714	intron	Gprk2 +	chr3R	31418319	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-41
1038	chr3R	31691533	31691539	chr3R	31696298	31696305	Doc	4	4766	4.5	4.5	4.5	0.7	4772	chr3R	31691533	intergenic	not near genes	chr3R	31693919	intergenic	not near genes	chr3R	31696305	intergenic	not near genes	chr3R_4_31690001	chr3R_31690001	RAL-41
1039	chr3R	31691542	31691557	chr3R	31696296	31696302	Doc	7	4760	3.0	4.0	3.5	1.6	4760	chr3R	31691542	intergenic	not near genes	chr3R	31693922	intergenic	not near genes	chr3R	31696302	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-41
1044	chrX	551426	551453	chrX	558982	559006	412	6	7559	1.5	2.0	1.8	2.1	7580	chrX	551426	intron	Appl +	chrX	555216	intron	Appl +	chrX	559006	intron	Appl +	chrX_6_555001	chrX_555001	RAL-41
1053	chrX	1518049	1518064	chrX	1523449	1523451	jockey	4	5398	4.5	2.5	3.5	0.9	5402	chrX	1518049	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523451	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-41
1054	chrX	1627975	1628003	chrX	1635443	1635456	gtwin	6	7465	3.0	3.5	3.2	1.4	7481	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631716	intron,intron	Mur2B -,br +	chrX	1635456	intron,intron	Mur2B -,br +	chrX_6_1630001	chrX_1630001	RAL-41
1056	chrX	1954885	1954894	chrX	1962825	1962832	Stalker2	4	7940	4.0	1.0	2.5	1.1	7947	chrX	1954885	intron	Hr4 +	chrX	1958858	intron	Hr4 +	chrX	1962832	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-41
1063	chrX	3597553	3597576	chrX	3619720	3619744	roo	7	22168	4.5	0.5	2.5	2.0	22191	chrX	3597553	intron	AstA-R1 +	chrX	3608648	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_7_3605001	chrX_3605001	RAL-41
1066	chrX	3726786	3726795	chrX	3730183	3730192	NOF	4	3396	2.0	1.5	1.8	1.4	3406	chrX	3726786	intron	tlk +	chrX	3728489	intron	tlk +	chrX	3730192	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-41
1067	chrX	4157904	4157918	chrX	4164957	4164971	297	4	7053	2.0	1.5	1.8	1.4	7067	chrX	4157904	intron	Fas2 -	chrX	4161438	intron	Fas2 -	chrX	4164971	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-41
1070	chrX	4763251	4763280	chrX	4763739	4763768	Stalker4	4	488	1.0	0.0	0.5	2.7	517	chrX	4763251	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763768	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-41
1071	chrX	4792397	4792408	chrX	4792830	4792841	jockey	6	432	0.5	4.0	2.2	1.9	444	chrX	4792397	intergenic	not near genes	chrX	4792619	intergenic	not near genes	chrX	4792841	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-41
1073	chrX	5096279	5096306	chrX	5103844	5103854	springer	4	7560	0.0	2.5	1.2	1.8	7575	chrX	5096279	intron,intron	CG15465 +,rg +	chrX	5100066	intron,intron	CG15465 +,rg +	chrX	5103854	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	RAL-41
1078	chrX	6335220	6335244	chrX	6337730	6337754	Tirant	7	2509	0.5	1.5	1.0	3.5	2534	chrX	6335220	intergenic	not near genes	chrX	6336487	intergenic	not near genes	chrX	6337754	intergenic	CG3842 +	chrX_7_6335001	chrX_6335001	RAL-41
1080	chrX	6562821	6562845	chrX	6571303	6571327	Tirant	4	8482	2.0	4.0	3.0	1.0	8506	chrX	6562821	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571327	intron	CG34417 +	chrX_4_6565001	chrX_6565001	RAL-41
1083	chrX	7023602	7023632	chrX	7030991	7031022	Tabor	7	7390	1.5	1.5	1.5	2.8	7420	chrX	7023602	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031022	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-41
1085	chrX	7125244	7125275	chrX	7134403	7134432	roo	5	9158	0.5	3.0	1.8	1.8	9188	chrX	7125244	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134432	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-41
1087	chrX	7702912	7702929	chrX	7703351	7703368	jockey	4	438	1.5	2.0	1.8	1.4	456	chrX	7702912	intron	CHES-1-like -	chrX	7703140	intron	CHES-1-like -	chrX	7703368	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-41
1090	chrX	8364851	8364878	chrX	8365241	8365274	BS	5	395	0.5	0.0	0.2	4.2	423	chrX	8364851	intron	nAChRalpha3 -	chrX	8365062	intron	nAChRalpha3 -	chrX	8365274	intron	nAChRalpha3 -	chrX_5_8365001	chrX_8365001	RAL-41
1093	chrX	8922324	8922357	chrX	8922758	8922791	jockey	6	432	1.0	0.5	0.8	3.3	467	chrX	8922324	intron	rdgA +	chrX	8922558	intron	rdgA +	chrX	8922791	intron	rdgA +	chrX_6_8920001	chrX_8920001	RAL-41
1094	chrX	9508134	9508166	chrX	9509652	9509682	jockey	7	1518	1.0	1.5	1.2	3.2	1548	chrX	9508134	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509682	intron	CG32700 -	chrX_7_9505001	chrX_9505001	RAL-41
1095	chrX	9575790	9575822	chrX	9576114	9576146	mdg3	6	321	0.5	0.5	0.5	4.0	356	chrX	9575790	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576146	intron,5` UTR	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	RAL-41
1099	chrX	10550857	10550887	chrX	10552317	10552354	hobo	8	1466	2.5	2.0	2.2	2.5	1497	chrX	10550857	intron	spri -	chrX	10551606	intron	spri -	chrX	10552354	intron	spri -	chrX_8_10550001	chrX_10550001	RAL-41
1101	chrX	10686054	10686080	chrX	10691191	10691216	roo	4	5137	2.0	0.5	1.2	1.8	5162	chrX	10686054	intron	X11Lbeta +	chrX	10688635	intron	X11Lbeta +	chrX	10691216	intron	X11Lbeta +	chrX_4_10685001	chrX_10685001	RAL-41
1106	chrX	11312062	11312089	chrX	11319414	11319438	Stalker2	6	7347	0.5	0.5	0.5	4.0	7376	chrX	11312062	intergenic	not near genes	chrX	11315750	intergenic	not near genes	chrX	11319438	intergenic	not near genes	chrX_6_11315001	chrX_11315001	RAL-41
1107	chrX	11633422	11633425	chrX	11640475	11640479	297	4	7054	3.5	1.5	2.5	1.1	7057	chrX	11633422	intron	Ptp10D +	chrX	11636950	intron	Ptp10D +	chrX	11640479	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-41
1110	chrX	12168136	12168167	chrX	12173578	12173609	I-element	4	5440	1.0	1.5	1.2	1.8	5473	chrX	12168136	intron	Ten-a +	chrX	12170872	intron	Ten-a +	chrX	12173609	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-41
1117	chrX	14105024	14105055	chrX	14114175	14114201	roo	7	9150	2.0	1.5	1.8	2.5	9177	chrX	14105024	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114201	5` UTR	CR44657 +	chrX_7_14105001	chrX_14105001	RAL-41
1121	chrX	14636467	14636491	chrX	14641908	14641932	I-element	4	5440	1.0	2.0	1.5	1.6	5465	chrX	14636467	intron	NetA -	chrX	14639200	intron	NetA -	chrX	14641932	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-41
1122	chrX	14936860	14936889	chrX	14946117	14946145	roo	6	9257	1.0	0.5	0.8	3.3	9285	chrX	14936860	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946145	intron	pdgy -	chrX_6_14940001	chrX_14940001	RAL-41
1124	chrX	15413058	15413079	chrX	15417360	15417380	Juan	4	4302	2.5	1.5	2.0	1.3	4322	chrX	15413058	intron	Cngl -	chrX	15415219	intron	Cngl -	chrX	15417380	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-41
1126	chrX	16492650	16492670	chrX	16498227	16498247	mdg3	4	5577	1.5	0.5	1.0	2.0	5597	chrX	16492650	intron	para -	chrX	16495448	intron	para -	chrX	16498247	intron	para -	chrX_4_16495001	chrX_16495001	RAL-41
1135	chrX	18194071	18194100	chrX	18194606	18194635	BS	7	535	1.5	2.0	1.8	2.5	564	chrX	18194071	intron	Frq2 +	chrX	18194353	intron	Frq2 +	chrX	18194635	intron	Frq2 +	chrX_7_18190001	chrX_18190001	RAL-41
1138	chrX	18429499	18429523	chrX	18434807	18434834	Transpac	5	5310	1.5	0.5	1.0	2.5	5335	chrX	18429499	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434834	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-41
1152	chrX	19472132	19472156	chrX	19472702	19472726	jockey	6	567	2.0	2.5	2.2	1.9	594	chrX	19472132	intergenic	kek5 +	chrX	19472429	intergenic	not near genes	chrX	19472726	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-41
1155	chrX	19710073	19710102	chrX	19711858	19711888	S-element	6	1786	1.0	1.0	1.0	3.0	1815	chrX	19710073	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711888	intron	meso18E -	chrX_6_19710001	chrX_19710001	RAL-41
1162	chrX	20377325	20377349	chrX	20378788	20378816	hobo	5	1463	2.5	1.5	2.0	1.7	1491	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-41
1165	chrX	20504140	20504148	chrX	20505661	20505669	transib2	4	1521	2.0	2.5	2.2	1.2	1529	chrX	20504140	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505669	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-41
1166	chrX	20836730	20836757	chrX	20844332	20844359	roo	5	7602	0.5	1.0	0.8	2.8	7629	chrX	20836730	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844359	intron	shakB -	chrX_5_20840001	chrX_20840001	RAL-41
1167	chrX	20940727	20940751	chrX	20942195	20942219	hobo	6	1468	4.0	1.5	2.8	1.6	1492	chrX	20940727	intergenic	not near genes	chrX	20941473	intergenic	not near genes	chrX	20942219	intergenic	not near genes	chrX_6_20940001	chrX_20940001	RAL-41
1172	chrX	21458708	21458729	chrX	21464143	21464165	Ivk	4	5436	0.0	2.5	1.2	1.8	5457	chrX	21458708	intergenic	not near genes	chrX	21461436	intergenic	not near genes	chrX	21464165	intergenic	not near genes	chrX_4_21460001	chrX_21460001	RAL-41
1177	chrX	22697495	22697523	chrX	22701792	22701820	Juan	5	4297	0.0	2.0	1.0	2.5	4325	chrX	22697495	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_5_22695001	chrX_22695001	RAL-41