SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 630317 630327 chr2L 630409 630419 5 92 1.0 2.0 1.5 2.0 102 chr2L 630317 intergenic not near genes chr2L 630368 intergenic not near genes chr2L 630419 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-41 2 chr2L 686917 686952 chr2L 695957 695991 roo 5 9034 1.5 1.5 1.5 2.0 9074 chr2L 686917 intron ds - chr2L 691454 intron ds - chr2L 695991 intron ds - chr2L_5_690001 chr2L_690001 RAL-41 3 chr2L 804304 804325 chr2L 804376 804401 8 72 2.5 1.0 1.8 2.9 97 chr2L 804304 intergenic not near genes chr2L 804352 intergenic not near genes chr2L 804401 intergenic not near genes chr2L_8_800001 chr2L_800001 RAL-41 4 chr2L 853324 853348 chr2L 853410 853434 10 85 4.0 2.5 3.2 2.4 110 chr2L 853324 intron kraken + chr2L 853379 intron kraken + chr2L 853434 intron kraken + chr2L_10_850001 chr2L_850001 RAL-41 5 chr2L 888987 889007 chr2L 889066 889082 4 76 3.5 1.5 2.5 1.1 95 chr2L 888987 intergenic not near genes chr2L 889034 intergenic not near genes chr2L 889082 intergenic not near genes chr2L_4_885001 chr2L_885001 RAL-41 6 chr2L 892412 892428 chr2L 892527 892543 5 115 1.0 1.5 1.2 2.3 131 chr2L 892412 intergenic not near genes chr2L 892478 intergenic not near genes chr2L 892543 intergenic not near genes chr2L_5_890001 chr2L_890001 RAL-41 7 chr2L 922467 922492 chr2L 922548 922572 5 81 2.0 1.0 1.5 2.0 105 chr2L 922467 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922572 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-41 8 chr2L 931632 931670 chr2L 931711 931749 10 78 1.0 2.0 1.5 4.0 117 chr2L 931632 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931749 intron CG4341 + chr2L_10_930001 chr2L_930001 RAL-41 9 chr2L 976883 976909 chr2L 984519 984544 roo 4 7636 1.5 1.0 1.2 1.8 7661 chr2L 976883 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-41 10 chr2L 1035559 1035593 chr2L 1035636 1035670 8 77 2.0 3.5 2.8 2.1 111 chr2L 1035559 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-41 11 chr2L 1042624 1042628 chr2L 1042701 1042705 5 77 1.0 0.0 0.5 3.3 81 chr2L 1042624 intron IA-2 - chr2L 1042664 intron IA-2 - chr2L 1042705 intron IA-2 - chr2L_5_1040001 chr2L_1040001 RAL-41 12 chr2L 1220137 1220160 chr2L 1227602 1227616 blood 7 7464 1.5 2.0 1.8 2.5 7479 chr2L 1220137 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227616 intron CG42329 + chr2L_7_1220001 chr2L_1220001 RAL-41 13 chr2L 1244411 1244435 chr2L 1244488 1244511 6 77 1.5 4.0 2.8 1.6 100 chr2L 1244411 intergenic not near genes chr2L 1244461 intergenic not near genes chr2L 1244511 intergenic not near genes chr2L_6_1240001 chr2L_1240001 RAL-41 14 chr2L 1261143 1261259 chr2L 1261223 1261340 4 81 0.5 0.5 0.5 2.7 197 chr2L 1261143 intron robo3 + chr2L 1261242 intron robo3 + chr2L 1261340 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-41 15 chr2L 1287286 1287317 chr2L 1287362 1287392 8 75 0.5 2.5 1.5 3.2 106 chr2L 1287286 intron robo3 + chr2L 1287339 intron robo3 + chr2L 1287392 intron robo3 + chr2L_8_1285001 chr2L_1285001 RAL-41 16 chr2L 1570687 1570712 chr2L 1573559 1573584 F-element 4 2872 6.0 3.5 4.8 0.7 2897 chr2L 1570687 intron haf + chr2L 1572136 intron haf + chr2L 1573584 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-41 17 chr2L 1584147 1584159 chr2L 1584387 1584398 5 239 8.5 2.0 5.2 0.8 251 chr2L 1584147 intron haf + chr2L 1584272 intron haf + chr2L 1584398 intron haf + chr2L_5_1580001 chr2L_1580001 RAL-41 18 chr2L 1584133 1584153 chr2L 1584331 1584354 6 199 8.5 3.5 6.0 0.9 221 chr2L 1584133 intron haf + chr2L 1584244 intron haf + chr2L 1584354 intron haf + chr2L_6_1580001 chr2L_1580001 RAL-41 19 chr2L 1655343 1655374 chr2L 1655433 1655464 4 90 1.5 0.5 1.0 2.0 121 chr2L 1655343 intron chinmo + chr2L 1655404 intron chinmo + chr2L 1655464 intron chinmo + chr2L_4_1655001 chr2L_1655001 RAL-41 20 chr2L 1662028 1662031 chr2L 1662113 1662115 4 85 1.5 0.0 0.8 2.2 87 chr2L 1662028 intron chinmo + chr2L 1662072 intron chinmo + chr2L 1662115 intron chinmo + chr2L_4_1660001 chr2L_1660001 RAL-41 21 chr2L 1711358 1711387 chr2L 1711680 1711711 mdg3 7 324 3.0 2.5 2.8 1.8 353 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-41 22 chr2L 1825248 1825276 chr2L 1825411 1825438 7 162 3.0 3.0 3.0 1.8 190 chr2L 1825248 exon CG31664 - chr2L 1825343 exon CG31664 - chr2L 1825438 exon CG31664 - chr2L_7_1825001 chr2L_1825001 RAL-41 23 chr2L 1848196 1848214 chr2L 1848287 1848307 5 93 2.0 5.0 3.5 1.1 111 chr2L 1848196 exon wry + chr2L 1848252 intron wry + chr2L 1848307 intron wry + chr2L_5_1845001 chr2L_1845001 RAL-41 24 chr2L 1901496 1901524 chr2L 1901573 1901601 5 73 3.0 3.0 3.0 1.2 105 chr2L 1901496 intron CG7337 + chr2L 1901548 intron CG7337 + chr2L 1901601 intron CG7337 + chr2L_5_1900001 chr2L_1900001 RAL-41 25 chr2L 1905084 1905112 chr2L 1905187 1905214 5 102 1.5 0.5 1.0 2.5 130 chr2L 1905084 intron CG7337 + chr2L 1905149 intron CG7337 + chr2L 1905214 intron CG7337 + chr2L_5_1905001 chr2L_1905001 RAL-41 26 chr2L 1946729 1946761 chr2L 1946805 1946837 8 75 1.5 0.0 0.8 4.4 108 chr2L 1946729 intergenic CG33673 - chr2L 1946783 intergenic CG33673 - chr2L 1946837 intergenic CG33673 - chr2L_8_1945001 chr2L_1945001 RAL-41 27 chr2L 1948624 1948656 chr2L 1948731 1948763 4 107 0.0 0.5 0.2 3.3 139 chr2L 1948624 intergenic not near genes chr2L 1948694 intergenic not near genes chr2L 1948763 intergenic not near genes chr2L_4_1945001 chr2L_1945001 RAL-41 28 chr2L 2100381 2100407 chr2L 2109529 2109555 roo 8 9150 1.5 2.0 1.8 2.9 9174 chr2L 2100381 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109555 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-41 29 chr2L 2260812 2260822 chr2L 2260897 2260908 4 86 3.0 1.0 2.0 1.3 96 chr2L 2260812 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260908 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-41 30 chr2L 2316474 2316498 chr2L 2316562 2316587 7 87 0.0 2.5 1.2 3.2 113 chr2L 2316474 intron,intron CG9967 -,eys + chr2L 2316530 intron,intron CG9967 -,eys + chr2L 2316587 intron,intron CG9967 -,eys + chr2L_7_2315001 chr2L_2315001 RAL-41 31 chr2L 2399394 2399416 chr2L 2399492 2399514 5 98 0.5 1.0 0.8 2.8 120 chr2L 2399394 intron VGlut + chr2L 2399454 intron VGlut + chr2L 2399514 intron VGlut + chr2L_5_2395001 chr2L_2395001 RAL-41 32 chr2L 2587816 2587847 chr2L 2587894 2587908 8 74 0.0 0.0 0.0 8.0 92 chr2L 2587816 intergenic not near genes chr2L 2587862 intergenic not near genes chr2L 2587908 intergenic not near genes chr2L_8_2585001 chr2L_2585001 RAL-41 33 chr2L 2661197 2661233 chr2L 2663035 2663070 I-element 6 1836 2.0 2.5 2.2 1.9 1873 chr2L 2661197 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663070 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-41 34 chr2L 2698870 2698891 chr2L 2698956 2698976 4 86 1.5 1.0 1.2 1.8 106 chr2L 2698870 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698976 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-41 35 chr2L 2927953 2927968 chr2L 2928039 2928055 7 87 0.0 1.5 0.8 3.9 102 chr2L 2927953 intron lilli + chr2L 2928004 intron lilli + chr2L 2928055 intron lilli + chr2L_7_2925001 chr2L_2925001 RAL-41 36 chr2L 2933304 2933324 chr2L 2935478 2935500 pogo 4 2176 1.5 2.0 1.8 1.4 2196 chr2L 2933304 intron lilli + chr2L 2934402 intron lilli + chr2L 2935500 intron lilli + chr2L_4_2930001 chr2L_2930001 RAL-41 37 chr2L 2937443 2937449 chr2L 2937520 2937526 4 77 2.5 2.0 2.2 1.2 83 chr2L 2937443 intron lilli + chr2L 2937484 intron lilli + chr2L 2937526 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-41 38 chr2L 3073038 3073065 chr2L 3078240 3078268 copia 7 5203 1.0 2.0 1.5 2.8 5230 chr2L 3073038 intron toc - chr2L 3075653 intron toc - chr2L 3078268 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-41 39 chr2L 3251495 3251526 chr2L 3259059 3259091 springer 6 7564 0.5 1.5 1.0 3.0 7596 chr2L 3251495 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-41 40 chr2L 3261641 3261665 chr2L 3261719 3261741 4 77 1.0 1.5 1.2 1.8 100 chr2L 3261641 3` UTR CR45338 - chr2L 3261691 3` UTR CR45338 - chr2L 3261741 3` UTR CR45338 - chr2L_4_3260001 chr2L_3260001 RAL-41 41 chr2L 3291261 3291270 chr2L 3291340 3291350 4 80 1.0 4.0 2.5 1.1 89 chr2L 3291261 3` UTR CG9664 - chr2L 3291306 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-41 42 chr2L 3367012 3367033 chr2L 3367162 3367182 6 150 2.5 1.5 2.0 2.0 170 chr2L 3367012 intron CG34394 - chr2L 3367097 intron CG34394 - chr2L 3367182 intron CG34394 - chr2L_6_3365001 chr2L_3365001 RAL-41 43 chr2L 3395026 3395048 chr2L 3395108 3395127 6 81 1.5 5.5 3.5 1.3 101 chr2L 3395026 intergenic not near genes chr2L 3395076 intergenic not near genes chr2L 3395127 intergenic not near genes chr2L_6_3395001 chr2L_3395001 RAL-41 44 chr2L 3482156 3482174 chr2L 3482246 3482264 7 90 0.0 0.5 0.2 5.8 108 chr2L 3482156 intron CG15414 - chr2L 3482210 intron CG15414 - chr2L 3482264 intron CG15414 - chr2L_7_3480001 chr2L_3480001 RAL-41 45 chr2L 3508350 3508369 chr2L 3508427 3508447 7 78 2.5 1.0 1.8 2.5 97 chr2L 3508350 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508447 intergenic CR45299 +,tim - chr2L_7_3505001 chr2L_3505001 RAL-41 46 chr2L 3663304 3663328 chr2L 3663383 3663407 4 79 2.5 3.0 2.8 1.1 103 chr2L 3663304 5` UTR CG34340 + chr2L 3663356 intron CG34340 + chr2L 3663407 intron CG34340 + chr2L_4_3660001 chr2L_3660001 RAL-41 47 chr2L 3729165 3729184 chr2L 3729263 3729282 4 98 0.5 1.5 1.0 2.0 117 chr2L 3729165 intergenic Shaw + chr2L 3729224 intergenic Shaw + chr2L 3729282 intergenic Shaw + chr2L_4_3725001 chr2L_3725001 RAL-41 48 chr2L 3785476 3785499 chr2L 3785552 3785575 5 76 6.0 3.0 4.5 0.9 99 chr2L 3785476 3` UTR CG31960 + chr2L 3785526 3` UTR CG31960 + chr2L 3785575 3` UTR CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-41 49 chr2L 3819032 3819055 chr2L 3819114 3819137 6 82 3.0 0.0 1.5 2.4 105 chr2L 3819032 intergenic CR44077 + chr2L 3819084 intergenic not near genes chr2L 3819137 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-41 50 chr2L 3937458 3937484 chr2L 3937535 3937562 7 76 0.0 1.0 0.5 4.7 104 chr2L 3937458 intron fred - chr2L 3937510 intron fred - chr2L 3937562 intron fred - chr2L_7_3935001 chr2L_3935001 RAL-41 51 chr2L 4160503 4160536 chr2L 4160914 4160947 6 411 0.0 1.0 0.5 4.0 444 chr2L 4160503 intergenic not near genes chr2L 4160725 intergenic not near genes chr2L 4160947 intergenic not near genes chr2L_6_4160001 chr2L_4160001 RAL-41 52 chr2L 4342269 4342279 chr2L 4342366 4342376 6 97 0.5 2.0 1.2 2.7 107 chr2L 4342269 intron Atet + chr2L 4342322 intron Atet + chr2L 4342376 intron Atet + chr2L_6_4340001 chr2L_4340001 RAL-41 53 chr2L 4601704 4601734 chr2L 4609145 4609175 mdg1 8 7441 0.0 2.0 1.0 4.0 7471 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609175 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-41 54 chr2L 4698784 4698806 chr2L 4699318 4699342 4 534 16.5 5.0 10.8 0.3 558 chr2L 4698784 intron CG34351 + chr2L 4699063 intron CG34351 + chr2L 4699342 intron CG34351 + chr2L_4_4695001 chr2L_4695001 RAL-41 55 chr2L 4862290 4862306 chr2L 4862365 4862378 6 75 3.0 0.5 1.8 2.1 88 chr2L 4862290 intron pog + chr2L 4862334 intron pog + chr2L 4862378 intron pog + chr2L_6_4860001 chr2L_4860001 RAL-41 56 chr2L 4918178 4918197 chr2L 4923250 4923270 jockey 4 5072 3.5 3.0 3.2 1.0 5092 chr2L 4918178 intron hoe1 - chr2L 4920724 intron hoe1 - chr2L 4923270 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-41 57 chr2L 5000999 5001016 chr2L 5001078 5001107 8 88 3.5 3.0 3.2 1.9 108 chr2L 5000999 intron Rtnl1 - chr2L 5001053 intron Rtnl1 - chr2L 5001107 intron Rtnl1 - chr2L_8_5000001 chr2L_5000001 RAL-41 58 chr2L 5001895 5001913 chr2L 5001972 5001991 6 78 1.0 0.5 0.8 3.3 96 chr2L 5001895 intron Rtnl1 - chr2L 5001943 intron Rtnl1 - chr2L 5001991 intron Rtnl1 - chr2L_6_5000001 chr2L_5000001 RAL-41 59 chr2L 5022424 5022459 chr2L 5022591 5022626 14 164 1.0 1.5 1.2 6.4 202 chr2L 5022424 intron vkg - chr2L 5022525 intron vkg - chr2L 5022626 intron vkg - chr2L_14_5020001 chr2L_5020001 RAL-41 60 chr2L 5027960 5027986 chr2L 5028044 5028065 5 79 0.5 2.0 1.2 2.3 105 chr2L 5027960 intron vkg - chr2L 5028012 intron vkg - chr2L 5028065 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-41 61 chr2L 5092411 5092434 chr2L 5092498 5092521 4 86 2.5 1.5 2.0 1.3 110 chr2L 5092411 intron pgant5 - chr2L 5092466 intron pgant5 - chr2L 5092521 intron pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-41 62 chr2L 5244287 5244304 chr2L 5244378 5244397 7 93 1.5 3.0 2.2 2.2 110 chr2L 5244287 intron tkv - chr2L 5244342 intron tkv - chr2L 5244397 intron tkv - chr2L_7_5240001 chr2L_5240001 RAL-41 63 chr2L 5296217 5296244 chr2L 5296296 5296323 6 79 0.0 0.5 0.2 5.0 106 chr2L 5296217 intron vri + chr2L 5296270 intron vri + chr2L 5296323 intron vri + chr2L_6_5295001 chr2L_5295001 RAL-41 64 chr2L 5342770 5342789 chr2L 5345150 5345169 Doc 4 2379 0.5 2.0 1.2 1.8 2399 chr2L 5342770 intergenic not near genes chr2L 5343970 intergenic not near genes chr2L 5345169 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-41 65 chr2L 5455415 5455449 chr2L 5455496 5455531 7 82 0.5 0.5 0.5 4.7 116 chr2L 5455415 intergenic not near genes chr2L 5455473 intergenic not near genes chr2L 5455531 intergenic not near genes chr2L_7_5455001 chr2L_5455001 RAL-41 66 chr2L 5500063 5500075 chr2L 5500149 5500161 4 86 3.0 1.5 2.2 1.2 98 chr2L 5500063 intergenic not near genes chr2L 5500112 intergenic not near genes chr2L 5500161 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-41 67 chr2L 5508529 5508549 chr2L 5508605 5508623 7 76 1.0 0.5 0.8 3.9 94 chr2L 5508529 intergenic not near genes chr2L 5508576 intergenic not near genes chr2L 5508623 intergenic not near genes chr2L_7_5505001 chr2L_5505001 RAL-41 68 chr2L 5511338 5511354 chr2L 5511420 5511436 4 82 4.5 2.5 3.5 0.9 98 chr2L 5511338 intergenic not near genes chr2L 5511387 intergenic not near genes chr2L 5511436 intergenic not near genes chr2L_4_5510001 chr2L_5510001 RAL-41 69 chr2L 5538496 5538523 chr2L 5538606 5538633 8 104 4.5 3.5 4.0 1.6 137 chr2L 5538496 exon CG14015 - chr2L 5538564 exon CG14015 - chr2L 5538633 exon CG14015 - chr2L_8_5535001 chr2L_5535001 RAL-41 70 chr2L 5588417 5588440 chr2L 5588546 5588554 7 124 1.0 0.5 0.8 3.9 137 chr2L 5588417 intergenic CG7251 - chr2L 5588486 intergenic CG7251 - chr2L 5588554 intergenic CG7251 - chr2L_7_5585001 chr2L_5585001 RAL-41 71 chr2L 5637776 5637793 chr2L 5637883 5637899 5 108 3.5 0.0 1.8 1.8 123 chr2L 5637776 intron CG31646 - chr2L 5637838 intron CG31646 - chr2L 5637899 intron CG31646 - chr2L_5_5635001 chr2L_5635001 RAL-41 72 chr2L 5650217 5650240 chr2L 5651029 5651055 7 814 9.0 14.0 11.5 0.6 838 chr2L 5650217 intron CG31646 - chr2L 5650636 intron CG31646 - chr2L 5651055 intron CG31646 - chr2L_7_5650001 chr2L_5650001 RAL-41 73 chr2L 5870481 5870500 chr2L 5870556 5870577 6 75 1.0 3.5 2.2 1.9 96 chr2L 5870481 intron rau - chr2L 5870529 intron rau - chr2L 5870577 intron rau - chr2L_6_5870001 chr2L_5870001 RAL-41 74 chr2L 5897596 5897624 chr2L 5897676 5897707 12 82 4.0 2.5 3.2 2.9 111 chr2L 5897596 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897707 intergenic not near genes chr2L_12_5895001 chr2L_5895001 RAL-41 75 chr2L 6007098 6007108 chr2L 6007174 6007184 4 76 1.5 0.5 1.0 2.0 86 chr2L 6007098 intergenic CG9098 -,Gal - chr2L 6007141 intergenic CG9098 -,Gal - chr2L 6007184 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-41 76 chr2L 6145081 6145101 chr2L 6145175 6145195 4 94 0.5 3.0 1.8 1.4 114 chr2L 6145081 intergenic CG13991 + chr2L 6145138 intergenic CG13991 + chr2L 6145195 intergenic CG13991 + chr2L_4_6145001 chr2L_6145001 RAL-41 77 chr2L 6185440 6185469 chr2L 6185518 6185542 8 76 1.5 1.5 1.5 3.2 102 chr2L 6185440 intron CG34380 + chr2L 6185491 intron CG34380 + chr2L 6185542 intron CG34380 + chr2L_8_6185001 chr2L_6185001 RAL-41 78 chr2L 6220134 6220159 chr2L 6220250 6220280 6 119 0.5 0.5 0.5 4.0 146 chr2L 6220134 intergenic not near genes chr2L 6220207 intergenic not near genes chr2L 6220280 intergenic not near genes chr2L_6_6220001 chr2L_6220001 RAL-41 79 chr2L 6400850 6400878 chr2L 6401146 6401174 7 296 1.0 2.0 1.5 2.8 324 chr2L 6400850 intron CG42368 - chr2L 6401012 intron CG42368 - chr2L 6401174 intron CG42368 - chr2L_7_6400001 chr2L_6400001 RAL-41 80 chr2L 6426859 6426887 chr2L 6445119 6445147 roo 8 18259 1.5 4.0 2.8 2.1 18288 chr2L 6426859 3` UTR CG9527 - chr2L 6436003 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-41 81 chr2L 6640907 6640937 chr2L 6641000 6641032 13 93 2.5 0.5 1.5 5.2 125 chr2L 6640907 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641032 intron CG31635 - chr2L_13_6640001 chr2L_6640001 RAL-41 82 chr2L 6655534 6655542 chr2L 6655887 6655904 4 359 4.0 3.0 3.5 0.9 370 chr2L 6655534 exon CG31633 - chr2L 6655719 exon CG31633 - chr2L 6655904 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-41 83 chr2L 6736623 6736651 chr2L 6736738 6736743 5 110 2.0 4.0 3.0 1.2 120 chr2L 6736623 exon TTLL3A - chr2L 6736683 exon TTLL3A - chr2L 6736743 exon TTLL3A - chr2L_5_6735001 chr2L_6735001 RAL-41 84 chr2L 6771988 6772015 chr2L 6772074 6772101 5 86 3.5 2.5 3.0 1.2 113 chr2L 6771988 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772101 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-41 85 chr2L 6799541 6799565 chr2L 6799629 6799653 8 88 1.0 0.5 0.8 4.4 112 chr2L 6799541 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799653 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-41 86 chr2L 6836518 6836529 chr2L 6836600 6836607 4 81 1.0 0.5 0.8 2.2 89 chr2L 6836518 intron sens-2 + chr2L 6836562 intron sens-2 + chr2L 6836607 intron sens-2 + chr2L_4_6835001 chr2L_6835001 RAL-41 87 chr2L 6850378 6850413 chr2L 6850461 6850496 5 82 2.5 1.5 2.0 1.7 118 chr2L 6850378 intergenic not near genes chr2L 6850437 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_5_6850001 chr2L_6850001 RAL-41 88 chr2L 7343328 7343358 chr2L 7350444 7350473 roo 6 7115 3.0 1.5 2.2 1.9 7145 chr2L 7343328 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-41 89 chr2L 7399306 7399325 chr2L 7399679 7399698 4 372 1.0 2.0 1.5 1.6 392 chr2L 7399306 intergenic not near genes chr2L 7399502 intergenic not near genes chr2L 7399698 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-41 90 chr2L 7502735 7502766 chr2L 7502811 7502842 7 74 0.5 1.0 0.8 3.9 107 chr2L 7502735 intron RapGAP1 - chr2L 7502788 intron RapGAP1 - chr2L 7502842 intron RapGAP1 - chr2L_7_7500001 chr2L_7500001 RAL-41 91 chr2L 7867566 7867597 chr2L 7867660 7867691 8 94 1.5 1.0 1.2 3.6 125 chr2L 7867566 intron Proc - chr2L 7867628 intron Proc - chr2L 7867691 intron Proc - chr2L_8_7865001 chr2L_7865001 RAL-41 92 chr2L 7977094 7977112 chr2L 7984069 7984087 297 4 6975 0.0 2.5 1.2 1.8 6993 chr2L 7977094 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-41 93 chr2L 8167152 8167181 chr2L 8167243 8167272 5 88 1.5 1.5 1.5 2.0 120 chr2L 8167152 intron Piezo + chr2L 8167212 intron Piezo + chr2L 8167272 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-41 94 chr2L 8244733 8244747 chr2L 8244854 8244869 5 122 0.0 2.5 1.2 2.3 136 chr2L 8244733 intron CG8086 - chr2L 8244801 intron CG8086 - chr2L 8244869 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-41 95 chr2L 8286295 8286323 chr2L 8286382 8286410 4 87 1.5 2.0 1.8 1.4 115 chr2L 8286295 intron Btk29A - chr2L 8286352 intron Btk29A - chr2L 8286410 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-41 96 chr2L 8349607 8349623 chr2L 8349712 8349728 5 105 4.0 1.0 2.5 1.4 121 chr2L 8349607 exon CG7778 + chr2L 8349668 intron CG7778 + chr2L 8349728 intron CG7778 + chr2L_5_8345001 chr2L_8345001 RAL-41 97 chr2L 8439683 8439704 chr2L 8440039 8440056 5 355 2.0 2.0 2.0 1.7 373 chr2L 8439683 exon mus201 + chr2L 8439870 exon mus201 + chr2L 8440056 exon mus201 + chr2L_5_8435001 chr2L_8435001 RAL-41 98 chr2L 8452420 8452449 chr2L 8461591 8461620 roo 7 9171 0.5 0.5 0.5 4.7 9200 chr2L 8452420 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461620 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-41 99 chr2L 8594465 8594497 chr2L 8601519 8601550 297 6 7051 0.5 2.0 1.2 2.7 7085 chr2L 8594465 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601550 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-41 100 chr2L 8723117 8723148 chr2L 8731493 8731525 Tirant 10 8377 0.5 2.0 1.2 4.5 8408 chr2L 8723117 intron raw - chr2L 8727321 intron raw - chr2L 8731525 intron raw - chr2L_10_8725001 chr2L_8725001 RAL-41 101 chr2L 8815752 8815771 chr2L 8815833 8815850 4 80 2.0 2.5 2.2 1.2 98 chr2L 8815752 intergenic not near genes chr2L 8815801 intergenic not near genes chr2L 8815850 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-41 102 chr2L 8846914 8846941 chr2L 8847011 8847038 5 95 1.0 0.5 0.8 2.8 124 chr2L 8846914 intergenic not near genes chr2L 8846976 intergenic not near genes chr2L 8847038 intergenic not near genes chr2L_5_8845001 chr2L_8845001 RAL-41 103 chr2L 8901086 8901116 chr2L 8901168 8901194 4 81 2.0 3.0 2.5 1.1 108 chr2L 8901086 intron CG34398 + chr2L 8901140 intron CG34398 + chr2L 8901194 intron CG34398 + chr2L_4_8900001 chr2L_8900001 RAL-41 104 chr2L 8939664 8939693 chr2L 8939744 8939773 11 80 0.5 2.0 1.2 5.0 109 chr2L 8939664 3` UTR Tsp29Fb + chr2L 8939718 3` UTR Tsp29Fb + chr2L 8939773 intergenic CG9510 -,Tsp29Fb + chr2L_11_8935001 chr2L_8935001 RAL-41 105 chr2L 8990398 8990411 chr2L 8990476 8990488 4 78 2.0 1.5 1.8 1.4 90 chr2L 8990398 intergenic not near genes chr2L 8990443 intergenic not near genes chr2L 8990488 intergenic not near genes chr2L_4_8990001 chr2L_8990001 RAL-41 106 chr2L 9000294 9000304 chr2L 9007795 9007814 roo 4 7508 2.5 1.0 1.8 1.4 7520 chr2L 9000294 intergenic Try29F + chr2L 9004054 intergenic not near genes chr2L 9007814 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-41 107 chr2L 9084336 9084340 chr2L 16217660 16217660 9 7133322 10.5 12.0 11.2 0.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-41 108 chr2L 9202056 9202088 chr2L 9202131 9202162 9 73 1.0 1.0 1.0 4.5 106 chr2L 9202056 intron tai + chr2L 9202109 intron tai + chr2L 9202162 intron tai + chr2L_9_9200001 chr2L_9200001 RAL-41 109 chr2L 9251157 9251176 chr2L 9251254 9251273 5 96 2.0 2.0 2.0 1.7 116 chr2L 9251157 intergenic aust -,borr - chr2L 9251215 intergenic aust -,borr - chr2L 9251273 intergenic borr -,aust - chr2L_5_9250001 chr2L_9250001 RAL-41 110 chr2L 9339392 9339400 chr2L 9339482 9339491 4 91 0.0 4.0 2.0 1.3 99 chr2L 9339392 intron Eaat1 + chr2L 9339442 intron Eaat1 + chr2L 9339491 intron Eaat1 + chr2L_4_9335001 chr2L_9335001 RAL-41 111 chr2L 9397378 9397408 chr2L 9397456 9397470 9 78 11.5 15.0 13.2 0.6 92 chr2L 9397378 intron,exon Shawl -,CG4438 - chr2L 9397424 intron,exon Shawl -,CG4438 - chr2L 9397470 intron,exon Shawl -,CG4438 - chr2L_9_9395001 chr2L_9395001 RAL-41 112 chr2L 9543767 9543773 chr2L 9543844 9543849 4 76 0.0 1.0 0.5 2.7 82 chr2L 9543767 intergenic Cpr30B +,CG13113 + chr2L 9543808 intergenic Cpr30B +,CG13113 + chr2L 9543849 intergenic Cpr30B +,CG13113 + chr2L_4_9540001 chr2L_9540001 RAL-41 113 chr2L 9973725 9973759 chr2L 9980843 9980876 HMS-Beagle 12 7117 3.0 2.0 2.5 3.4 7151 chr2L 9973725 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_12_9975001 chr2L_9975001 RAL-41 114 chr2L 10039109 10039131 chr2L 10039330 10039350 11 218 3.5 2.0 2.8 2.9 241 chr2L 10039109 intergenic obst-B + chr2L 10039230 intergenic obst-B + chr2L 10039350 intergenic obst-B + chr2L_11_10035001 chr2L_10035001 RAL-41 115 chr2L 10051727 10051750 chr2L 10051811 10051835 6 84 4.0 3.5 3.8 1.2 108 chr2L 10051727 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051835 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-41 116 chr2L 10102600 10102607 chr2L 10102681 10102688 5 80 4.0 0.0 2.0 1.7 88 chr2L 10102600 intron,intron CG44153 -,CG34109 + chr2L 10102644 intron,intron CG44153 -,CG34109 + chr2L 10102688 intron,intron CG44153 -,CG34109 + chr2L_5_10100001 chr2L_10100001 RAL-41 117 chr2L 10102612 10102626 chr2L 10102680 10102707 5 78 2.5 0.0 1.2 2.3 95 chr2L 10102612 intron,intron CG44153 -,CG34109 + chr2L 10102660 intron,intron CG44153 -,CG34109 + chr2L 10102707 intron,intron CG44153 -,CG34109 + chr2L_5_10100001 chr2L_10100001 RAL-41 118 chr2L 10153201 10153237 chr2L 10153279 10153316 7 76 1.5 3.0 2.2 2.2 115 chr2L 10153201 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-41 119 chr2L 10176004 10176010 chr2L 10176085 10176091 4 81 7.5 2.0 4.8 0.7 87 chr2L 10176004 intron CG44153 - chr2L 10176048 intron CG44153 - chr2L 10176091 intron CG44153 - chr2L_4_10175001 chr2L_10175001 RAL-41 120 chr2L 10372871 10372896 chr2L 10372959 10372984 5 88 1.5 1.5 1.5 2.0 113 chr2L 10372871 exon rho-5 - chr2L 10372928 intron rho-5 - chr2L 10372984 intron rho-5 - chr2L_5_10370001 chr2L_10370001 RAL-41 121 chr2L 10490276 10490306 chr2L 10490357 10490388 14 81 0.0 1.0 0.5 9.3 112 chr2L 10490276 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490388 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_14_10490001 chr2L_10490001 RAL-41 122 chr2L 10563913 10563946 chr2L 10564006 10564039 5 88 2.0 0.5 1.2 2.3 126 chr2L 10563913 intron Trim9 + chr2L 10563976 intron Trim9 + chr2L 10564039 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-41 123 chr2L 10580793 10580818 chr2L 10580874 10580899 4 81 0.5 2.5 1.5 1.6 106 chr2L 10580793 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580899 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-41 124 chr2L 10633353 10633385 chr2L 10633440 10633456 4 82 1.5 1.5 1.5 1.6 103 chr2L 10633353 intron CG7329 - chr2L 10633404 intron CG7329 - chr2L 10633456 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-41 125 chr2L 10656497 10656517 chr2L 10656582 10656602 5 85 2.5 2.5 2.5 1.4 105 chr2L 10656497 intergenic not near genes chr2L 10656550 intergenic not near genes chr2L 10656602 intergenic not near genes chr2L_5_10655001 chr2L_10655001 RAL-41 126 chr2L 10852169 10852181 chr2L 10852258 10852270 4 88 1.5 2.5 2.0 1.3 101 chr2L 10852169 intron CG43129 + chr2L 10852220 intron CG43129 + chr2L 10852270 intron CG43129 + chr2L_4_10850001 chr2L_10850001 RAL-41 127 chr2L 10873062 10873080 chr2L 10873129 10873151 6 72 2.5 2.5 2.5 1.7 89 chr2L 10873062 intergenic not near genes chr2L 10873106 intergenic not near genes chr2L 10873151 intergenic not near genes chr2L_6_10870001 chr2L_10870001 RAL-41 128 chr2L 11169478 11169503 chr2L 11169613 11169638 6 135 2.0 1.5 1.8 2.1 160 chr2L 11169478 intron Ca-beta - chr2L 11169558 intron Ca-beta - chr2L 11169638 intron Ca-beta - chr2L_6_11165001 chr2L_11165001 RAL-41 129 chr2L 11357982 11358003 chr2L 11358060 11358081 6 78 0.5 0.5 0.5 4.0 99 chr2L 11357982 intergenic not near genes chr2L 11358032 intergenic not near genes chr2L 11358081 intergenic not near genes chr2L_6_11355001 chr2L_11355001 RAL-41 130 chr2L 11418669 11418685 chr2L 11418748 11418763 5 79 0.5 3.0 1.8 1.8 94 chr2L 11418669 intergenic not near genes chr2L 11418716 intergenic not near genes chr2L 11418763 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-41 131 chr2L 11614057 11614075 chr2L 11615547 11615568 hopper2 4 1491 4.0 0.0 2.0 1.3 1511 chr2L 11614057 intron kek2 + chr2L 11614812 intron kek2 + chr2L 11615568 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-41 132 chr2L 11674700 11674722 chr2L 11675053 11675075 7 353 1.0 3.0 2.0 2.3 375 chr2L 11674700 intergenic not near genes chr2L 11674888 intergenic not near genes chr2L 11675075 intergenic not near genes chr2L_7_11670001 chr2L_11670001 RAL-41 133 chr2L 11770597 11770624 chr2L 11770684 11770710 6 87 3.5 2.5 3.0 1.5 113 chr2L 11770597 intergenic not near genes chr2L 11770654 intergenic not near genes chr2L 11770710 intergenic not near genes chr2L_6_11770001 chr2L_11770001 RAL-41 134 chr2L 11777190 11777213 chr2L 11777268 11777290 6 78 0.5 4.0 2.2 1.9 100 chr2L 11777190 intergenic not near genes chr2L 11777240 intergenic not near genes chr2L 11777290 intergenic not near genes chr2L_6_11775001 chr2L_11775001 RAL-41 135 chr2L 11808668 11808682 chr2L 11808738 11808758 7 74 2.0 2.0 2.0 2.3 90 chr2L 11808668 intron crol - chr2L 11808713 intron crol - chr2L 11808758 intron crol - chr2L_7_11805001 chr2L_11805001 RAL-41 136 chr2L 11862357 11862386 chr2L 11862450 11862479 7 92 1.0 0.5 0.8 3.9 122 chr2L 11862357 intron Pde1c - chr2L 11862418 intron Pde1c - chr2L 11862479 intron Pde1c - chr2L_7_11860001 chr2L_11860001 RAL-41 137 chr2L 11892546 11892813 chr2L 11892635 11892889 10 90 3.0 2.0 2.5 2.9 343 chr2L 11892546 intron Pde1c - chr2L 11892718 intron Pde1c - chr2L 11892889 intron Pde1c - chr2L_10_11890001 chr2L_11890001 RAL-41 138 chr2L 11954071 11954103 chr2L 11954223 11954241 5 149 0.0 0.0 0.0 5.0 170 chr2L 11954071 3` UTR CR43314 - chr2L 11954156 3` UTR CR43314 - chr2L 11954241 3` UTR CR43314 - chr2L_5_11950001 chr2L_11950001 RAL-41 139 chr2L 12018439 12018448 chr2L 12022371 12022381 4 3932 18.0 12.5 15.2 0.2 3942 chr2L 12018439 exon CG6734 - chr2L 12020410 exon CG6734 - chr2L 12022381 intergenic not near genes chr2L_4_12020001 chr2L_12020001 RAL-41 140 chr2L 12157616 12157641 chr2L 12157686 12157720 6 77 0.5 0.5 0.5 4.0 104 chr2L 12157616 intron CG31760 + chr2L 12157668 intron CG31760 + chr2L 12157720 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-41 141 chr2L 12158522 12158545 chr2L 12158712 12158737 6 190 1.5 2.0 1.8 2.1 215 chr2L 12158522 intron CG31760 + chr2L 12158630 intron CG31760 + chr2L 12158737 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-41 142 chr2L 12186621 12186639 chr2L 12186703 12186721 6 82 2.0 1.0 1.5 2.4 100 chr2L 12186621 intron aret + chr2L 12186671 intron aret + chr2L 12186721 intron aret + chr2L_6_12185001 chr2L_12185001 RAL-41 143 chr2L 12264186 12264220 chr2L 12264274 12264306 7 87 2.0 1.0 1.5 2.8 120 chr2L 12264186 intron aret + chr2L 12264246 intron aret + chr2L 12264306 intron aret + chr2L_7_12260001 chr2L_12260001 RAL-41 144 chr2L 12445440 12445464 chr2L 12445528 12445552 4 88 1.0 2.0 1.5 1.6 112 chr2L 12445440 intron Oatp33Ea - chr2L 12445496 intron Oatp33Ea - chr2L 12445552 intron Oatp33Ea - chr2L_4_12445001 chr2L_12445001 RAL-41 145 chr2L 12529252 12529448 chr2L 12529378 12529524 5 85 0.5 0.5 0.5 3.3 272 chr2L 12529252 intron bun - chr2L 12529388 intron bun - chr2L 12529524 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-41 146 chr2L 12653030 12653065 chr2L 12653107 12653142 9 75 2.5 2.0 2.2 2.8 112 chr2L 12653030 intergenic not near genes chr2L 12653086 intergenic not near genes chr2L 12653142 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-41 147 chr2L 12653789 12653812 chr2L 12653905 12653907 4 110 1.5 0.5 1.0 2.0 118 chr2L 12653789 intergenic not near genes chr2L 12653848 intergenic not near genes chr2L 12653907 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-41 148 chr2L 12728923 12728940 chr2L 12729165 12729179 pogo 4 240 2.0 4.0 3.0 1.0 256 chr2L 12728923 intron MRP + chr2L 12729051 intron MRP + chr2L 12729179 intron MRP + chr2L_4_12725001 chr2L_12725001 RAL-41 149 chr2L 12731054 12731093 chr2L 12735821 12735859 F-element 8 4766 0.5 1.5 1.0 4.0 4805 chr2L 12731054 intron MRP + chr2L 12733456 intron MRP + chr2L 12735859 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-41 150 chr2L 12739173 12739206 chr2L 12743954 12743987 Doc 9 4780 1.0 2.5 1.8 3.2 4814 chr2L 12739173 exon MRP + chr2L 12741580 intron MRP + chr2L 12743987 exon MRP + chr2L_9_12740001 chr2L_12740001 RAL-41 151 chr2L 12751309 12751341 chr2L 12751392 12751424 10 83 2.0 3.5 2.8 2.6 115 chr2L 12751309 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_10_12750001 chr2L_12750001 RAL-41 152 chr2L 12861693 12861728 chr2L 12863160 12863182 hobo 8 1462 1.0 0.5 0.8 4.4 1489 chr2L 12861693 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-41 153 chr2L 12933848 12933882 chr2L 12941315 12941342 blood 11 7466 1.5 2.0 1.8 3.9 7494 chr2L 12933848 intergenic not near genes chr2L 12937595 intergenic not near genes chr2L 12941342 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-41 154 chr2L 12945975 12945996 chr2L 12946055 12946076 4 80 2.0 3.5 2.8 1.1 101 chr2L 12945975 intergenic not near genes chr2L 12946026 intergenic not near genes chr2L 12946076 intergenic not near genes chr2L_4_12945001 chr2L_12945001 RAL-41 155 chr2L 12965188 12965217 chr2L 12965268 12965297 7 78 1.5 1.5 1.5 2.8 109 chr2L 12965188 intergenic not near genes chr2L 12965242 intergenic not near genes chr2L 12965297 intergenic not near genes chr2L_7_12965001 chr2L_12965001 RAL-41 156 chr2L 13204314 13204322 chr2L 13204413 13204421 4 99 4.0 2.5 3.2 1.0 107 chr2L 13204314 intron Pect + chr2L 13204368 intron Pect + chr2L 13204421 intron Pect + chr2L_4_13200001 chr2L_13200001 RAL-41 157 chr2L 13323837 13323858 chr2L 13324362 13324383 7 525 3.5 3.5 3.5 1.6 546 chr2L 13323837 intron CG43778 - chr2L 13324110 intron CG43778 - chr2L 13324383 intron CG43778 - chr2L_7_13320001 chr2L_13320001 RAL-41 158 chr2L 13405649 13405677 chr2L 13410446 13410474 Doc 6 4797 3.0 3.0 3.0 1.5 4825 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-41 159 chr2L 13449463 13449494 chr2L 13456899 13456923 Quasimodo 7 7434 2.0 2.5 2.2 2.2 7460 chr2L 13449463 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453193 intron CG42784 + chr2L 13456923 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-41 160 chr2L 13481447 13481470 chr2L 13482054 13482077 jockey 9 607 3.5 0.5 2.0 3.0 630 chr2L 13481447 intron CG42784 + chr2L 13481762 intron CG42784 + chr2L 13482077 intron CG42784 + chr2L_9_13480001 chr2L_13480001 RAL-41 161 chr2L 13573002 13573028 chr2L 13573172 13573198 6 170 1.5 1.5 1.5 2.4 196 chr2L 13573002 intron kuz + chr2L 13573100 intron kuz + chr2L 13573198 intron kuz + chr2L_6_13570001 chr2L_13570001 RAL-41 162 chr2L 13692157 13692182 chr2L 13692233 13692258 7 76 2.5 2.0 2.2 2.2 101 chr2L 13692157 intron CG31814 - chr2L 13692208 intron CG31814 - chr2L 13692258 intron CG31814 - chr2L_7_13690001 chr2L_13690001 RAL-41 163 chr2L 13699554 13699709 chr2L 13699631 13699928 15 151 2.0 1.0 1.5 6.0 374 chr2L 13699554 intron CG31814 - chr2L 13699741 intron CG31814 - chr2L 13699928 intron CG31814 - chr2L_15_13695001 chr2L_13695001 RAL-41 164 chr2L 13701886 13701918 chr2L 13701966 13701995 5 79 1.5 1.5 1.5 2.0 109 chr2L 13701886 intron CG31814 - chr2L 13701940 intron CG31814 - chr2L 13701995 intron CG31814 - chr2L_5_13700001 chr2L_13700001 RAL-41 165 chr2L 13988296 13988385 chr2L 13988383 13988442 4 76 0.0 0.0 0.0 4.0 146 chr2L 13988296 intron rk - chr2L 13988369 intron rk - chr2L 13988442 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-41 166 chr2L 14017764 14017798 chr2L 14017856 14017889 6 91 1.5 4.0 2.8 1.6 125 chr2L 14017764 intron bgm + chr2L 14017826 intron bgm + chr2L 14017889 intron bgm + chr2L_6_14015001 chr2L_14015001 RAL-41 167 chr2L 14112740 14112771 chr2L 14112831 14112862 5 91 2.0 1.5 1.8 1.8 122 chr2L 14112740 intergenic not near genes chr2L 14112801 intergenic not near genes chr2L 14112862 intergenic not near genes chr2L_5_14110001 chr2L_14110001 RAL-41 168 chr2L 14222308 14222320 chr2L 14222392 14222406 4 86 0.5 0.5 0.5 2.7 98 chr2L 14222308 intron Dyrk2 - chr2L 14222357 intron Dyrk2 - chr2L 14222406 intron Dyrk2 - chr2L_4_14220001 chr2L_14220001 RAL-41 169 chr2L 14333908 14333928 chr2L 14334008 14334028 6 100 0.5 1.0 0.8 3.3 120 chr2L 14333908 intergenic ms(2)34Fe +,CG33090 + chr2L 14333968 intergenic ms(2)34Fe +,CG33090 + chr2L 14334028 intergenic CG33090 +,ms(2)34Fe + chr2L_6_14330001 chr2L_14330001 RAL-41 170 chr2L 14369128 14369163 chr2L 14369244 14369279 7 115 0.5 0.0 0.2 5.8 151 chr2L 14369128 intergenic not near genes chr2L 14369204 intergenic not near genes chr2L 14369279 intergenic not near genes chr2L_7_14365001 chr2L_14365001 RAL-41 171 chr2L 14564198 14564203 chr2L 14564273 14564274 4 74 3.5 2.5 3.0 1.0 76 chr2L 14564198 intergenic CG3473 - chr2L 14564236 intergenic not near genes chr2L 14564274 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-41 172 chr2L 14564205 14564227 chr2L 14564271 14564277 8 61 1.5 2.0 1.8 2.9 72 chr2L 14564205 intergenic CG3473 - chr2L 14564241 intergenic not near genes chr2L 14564277 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-41 173 chr2L 14613268 14613292 chr2L 14613506 14613525 5 238 1.5 3.5 2.5 1.4 257 chr2L 14613268 intron,5` UTR osp -,CR43411 + chr2L 14613396 intron,5` UTR osp -,CR43411 + chr2L 14613525 intron,5` UTR osp -,CR43411 + chr2L_5_14610001 chr2L_14610001 RAL-41 174 chr2L 14678359 14678382 chr2L 14678467 14678487 5 106 1.0 1.0 1.0 2.5 128 chr2L 14678359 intron osp - chr2L 14678423 intron osp - chr2L 14678487 intron osp - chr2L_5_14675001 chr2L_14675001 RAL-41 175 chr2L 14802482 14802489 chr2L 14802565 14802570 4 82 0.0 2.0 1.0 2.0 88 chr2L 14802482 exon CG33308 + chr2L 14802526 exon CG33308 + chr2L 14802570 exon CG33308 + chr2L_4_14800001 chr2L_14800001 RAL-41 176 chr2L 14803879 14803913 chr2L 14809082 14809116 copia 10 5201 1.0 1.5 1.2 4.5 5237 chr2L 14803879 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_10_14805001 chr2L_14805001 RAL-41 177 chr2L 14889952 14889985 chr2L 14890377 14890410 jockey 7 425 0.5 3.0 1.8 2.5 458 chr2L 14889952 intergenic not near genes chr2L 14890181 intergenic not near genes chr2L 14890410 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-41 178 chr2L 15003551 15003568 chr2L 15003635 15003651 5 81 0.0 3.0 1.5 2.0 100 chr2L 15003551 intergenic not near genes chr2L 15003601 intergenic not near genes chr2L 15003651 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-41 179 chr2L 15026021 15026042 chr2L 15026101 15026122 8 80 2.5 1.5 2.0 2.7 101 chr2L 15026021 exon GABA-B-R1 + chr2L 15026072 intron GABA-B-R1 + chr2L 15026122 intron GABA-B-R1 + chr2L_8_15025001 chr2L_15025001 RAL-41 180 chr2L 15195382 15195410 chr2L 15195487 15195514 4 103 2.5 2.0 2.2 1.2 132 chr2L 15195382 intron CG4168 - chr2L 15195448 intron CG4168 - chr2L 15195514 intron CG4168 - chr2L_4_15195001 chr2L_15195001 RAL-41 181 chr2L 15393262 15393297 chr2L 15393353 15393381 4 86 1.5 1.0 1.2 1.8 119 chr2L 15393262 intergenic not near genes chr2L 15393322 intergenic not near genes chr2L 15393381 intergenic not near genes chr2L_4_15390001 chr2L_15390001 RAL-41 182 chr2L 15569063 15569092 chr2L 15569139 15569167 10 73 3.5 0.5 2.0 3.3 104 chr2L 15569063 intron kek3 + chr2L 15569115 intron kek3 + chr2L 15569167 intron kek3 + chr2L_10_15565001 chr2L_15565001 RAL-41 183 chr2L 15586413 15586437 chr2L 15593465 15593489 297 5 7052 0.0 2.5 1.2 2.3 7076 chr2L 15586413 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593489 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-41 184 chr2L 16059961 16059978 chr2L 16060059 16060076 4 98 1.5 1.5 1.5 1.6 115 chr2L 16059961 intron beat-Ia + chr2L 16060018 intron beat-Ia + chr2L 16060076 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-41 185 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 10 145889 11.0 12.0 11.5 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-41 186 chr2L 16078778 16078804 chr2L 16078925 16078951 6 146 1.5 2.0 1.8 2.1 173 chr2L 16078778 intron beat-Ia + chr2L 16078864 intron beat-Ia + chr2L 16078951 intron beat-Ia + chr2L_6_16075001 chr2L_16075001 RAL-41 187 chr2L 16141171 16141191 chr2L 16146378 16146398 copia 6 5207 0.0 2.0 1.0 3.0 5227 chr2L 16141171 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-41 188 chr2L 9084337 9084340 chr2L 16217660 16217660 12 7133321 10.5 12.0 11.2 1.0 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-41 189 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 11.0 12.0 11.5 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-41 190 chr2L 16280266 16280274 chr2L 16281437 16281445 1360 4 1170 3.5 5.5 4.5 0.7 1179 chr2L 16280266 intron crp - chr2L 16280856 intron crp - chr2L 16281445 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-41 191 chr2L 16381836 16381868 chr2L 16382074 16382106 12 236 1.0 4.0 2.5 3.4 270 chr2L 16381836 intergenic not near genes chr2L 16381971 intergenic not near genes chr2L 16382106 intergenic not near genes chr2L_12_16380001 chr2L_16380001 RAL-41 192 chr2L 16391802 16391832 chr2L 16391878 16391907 5 76 1.5 1.0 1.2 2.3 105 chr2L 16391802 intergenic not near genes chr2L 16391854 intergenic not near genes chr2L 16391907 intergenic not near genes chr2L_5_16390001 chr2L_16390001 RAL-41 193 chr2L 16434107 16434123 chr2L 16434189 16434205 4 82 0.0 1.5 0.8 2.2 98 chr2L 16434107 intron CG5888 - chr2L 16434156 intron CG5888 - chr2L 16434205 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-41 194 chr2L 16504999 16505009 chr2L 16505108 16505118 5 109 0.0 1.5 0.8 2.8 119 chr2L 16504999 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505118 intron Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-41 195 chr2L 16583094 16583116 chr2L 16583182 16583204 5 88 0.5 0.0 0.2 4.2 110 chr2L 16583094 intron CG42389 + chr2L 16583149 intron CG42389 + chr2L 16583204 intron CG42389 + chr2L_5_16580001 chr2L_16580001 RAL-41 196 chr2L 16616601 16616612 chr2L 16616669 16616696 4 77 4.0 2.5 3.2 1.0 95 chr2L 16616601 intron CG42389 + chr2L 16616648 intron CG42389 + chr2L 16616696 intron CG42389 + chr2L_4_16615001 chr2L_16615001 RAL-41 197 chr2L 16693921 16693942 chr2L 16694002 16694022 6 81 0.5 2.5 1.5 2.4 101 chr2L 16693921 intron grp + chr2L 16693972 intron grp + chr2L 16694022 intron grp + chr2L_6_16690001 chr2L_16690001 RAL-41 198 chr2L 16709079 16709102 chr2L 16709162 16709186 5 84 1.5 2.0 1.8 1.8 107 chr2L 16709079 intron CG31808 - chr2L 16709132 intron CG31808 - chr2L 16709186 intron CG31808 - chr2L_5_16705001 chr2L_16705001 RAL-41 199 chr2L 16927549 16927569 chr2L 16928204 16928225 7 651 3.0 0.0 1.5 2.8 676 chr2L 16927549 intergenic not near genes chr2L 16927887 intergenic not near genes chr2L 16928225 intergenic not near genes chr2L_7_16925001 chr2L_16925001 RAL-41 200 chr2L 16958108 16958127 chr2L 16962895 16962911 Doc 5 4786 1.0 2.0 1.5 2.0 4803 chr2L 16958108 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962911 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-41 201 chr2L 17062756 17062790 chr2L 17062838 17062872 4 82 1.0 2.0 1.5 1.6 116 chr2L 17062756 intergenic not near genes chr2L 17062814 intergenic not near genes chr2L 17062872 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-41 202 chr2L 17264753 17264778 chr2L 17264833 17264857 4 80 0.5 2.5 1.5 1.6 104 chr2L 17264753 intergenic not near genes chr2L 17264805 intergenic not near genes chr2L 17264857 intergenic not near genes chr2L_4_17260001 chr2L_17260001 RAL-41 203 chr2L 17273198 17273223 chr2L 17277980 17278006 F-element 9 4781 2.5 1.0 1.8 3.2 4808 chr2L 17273198 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_9_17275001 chr2L_17275001 RAL-41 204 chr2L 17294472 17294484 chr2L 17294562 17294573 4 90 2.0 0.5 1.2 1.8 101 chr2L 17294472 intergenic not near genes chr2L 17294522 intergenic not near genes chr2L 17294573 intergenic not near genes chr2L_4_17290001 chr2L_17290001 RAL-41 205 chr2L 17543597 17543625 chr2L 17543690 17543718 4 93 0.0 1.5 0.8 2.2 121 chr2L 17543597 intergenic not near genes chr2L 17543658 intergenic not near genes chr2L 17543718 intergenic not near genes chr2L_4_17540001 chr2L_17540001 RAL-41 206 chr2L 17607476 17607483 chr2L 17607574 17607580 4 98 0.5 0.0 0.2 3.3 104 chr2L 17607476 intergenic CR44412 - chr2L 17607528 intergenic CR44412 - chr2L 17607580 intergenic CR44412 - chr2L_4_17605001 chr2L_17605001 RAL-41 207 chr2L 17709137 17709145 chr2L 17709220 17709229 4 83 1.0 2.0 1.5 1.6 92 chr2L 17709137 intron CadN - chr2L 17709183 intron CadN - chr2L 17709229 intron CadN - chr2L_4_17705001 chr2L_17705001 RAL-41 208 chr2L 17867883 17867915 chr2L 17868025 17868057 8 142 0.5 2.0 1.2 3.6 174 chr2L 17867883 intron CadN2 - chr2L 17867970 intron CadN2 - chr2L 17868057 intron CadN2 - chr2L_8_17865001 chr2L_17865001 RAL-41 209 chr2L 17943890 17943909 chr2L 17943993 17944011 5 103 3.5 1.5 2.5 1.4 121 chr2L 17943890 intergenic not near genes chr2L 17943950 intergenic not near genes chr2L 17944011 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-41 210 chr2L 18009741 18009762 chr2L 18009820 18009845 5 81 4.0 3.5 3.8 1.0 104 chr2L 18009741 3` UTR elfless - chr2L 18009793 3` UTR elfless - chr2L 18009845 3` UTR elfless - chr2L_5_18005001 chr2L_18005001 RAL-41 211 chr2L 18045692 18045716 chr2L 18045899 18045923 5 206 3.0 4.0 3.5 1.1 231 chr2L 18045692 intron rdo + chr2L 18045808 intron rdo + chr2L 18045923 intron rdo + chr2L_5_18045001 chr2L_18045001 RAL-41 212 chr2L 18051877 18051892 chr2L 18061024 18061039 roo 4 9147 5.5 2.0 3.8 0.8 9162 chr2L 18051877 intron rdo + chr2L 18056458 intron rdo + chr2L 18061039 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-41 213 chr2L 18111242 18111262 chr2L 18111333 18111353 4 90 2.5 1.5 2.0 1.3 111 chr2L 18111242 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-41 214 chr2L 18235061 18235095 chr2L 18235193 18235226 8 122 2.5 4.0 3.2 1.9 165 chr2L 18235061 intron CG42750 - chr2L 18235144 intron CG42750 - chr2L 18235226 intron CG42750 - chr2L_8_18235001 chr2L_18235001 RAL-41 215 chr2L 18315255 18315281 chr2L 18315331 18315361 9 79 2.5 2.0 2.2 2.8 106 chr2L 18315255 intergenic not near genes chr2L 18315308 intergenic not near genes chr2L 18315361 intergenic not near genes chr2L_9_18315001 chr2L_18315001 RAL-41 216 chr2L 18400400 18400431 chr2L 18400475 18400511 5 79 0.0 1.5 0.8 2.8 111 chr2L 18400400 intergenic CR44486 + chr2L 18400456 intergenic CR44486 + chr2L 18400511 5` UTR CR44486 + chr2L_5_18400001 chr2L_18400001 RAL-41 217 chr2L 18408024 18408053 chr2L 18412808 18412836 Doc 5 4783 1.0 0.0 0.5 3.3 4812 chr2L 18408024 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-41 218 chr2L 18449396 18449419 chr2L 18449497 18449520 4 100 0.0 0.5 0.2 3.3 124 chr2L 18449396 intergenic bsf -,ncm - chr2L 18449458 intergenic bsf - chr2L 18449520 3` UTR bsf - chr2L_4_18445001 chr2L_18445001 RAL-41 219 chr2L 18573644 18573657 chr2L 18573967 18573979 4 322 10.5 17.0 13.8 0.3 335 chr2L 18573644 intron Pde11 - chr2L 18573812 intron Pde11 - chr2L 18573979 intron Pde11 - chr2L_4_18570001 chr2L_18570001 RAL-41 220 chr2L 18673673 18673691 chr2L 18674104 18674123 7 431 4.0 2.0 3.0 1.8 450 chr2L 18673673 intron Mst36Fb - chr2L 18673898 exon Mst36Fb - chr2L 18674123 exon Mst36Fb - chr2L_7_18670001 chr2L_18670001 RAL-41 221 chr2L 18876869 18876883 chr2L 18876946 18876960 5 77 0.0 2.0 1.0 2.5 91 chr2L 18876869 intron tup - chr2L 18876914 intron tup - chr2L 18876960 intron tup - chr2L_5_18875001 chr2L_18875001 RAL-41 222 chr2L 18898402 18898425 chr2L 18898484 18898507 5 81 0.5 0.5 0.5 3.3 105 chr2L 18898402 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898507 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-41 223 chr2L 18984257 18984281 chr2L 18984324 18984358 4 74 4.0 0.0 2.0 1.3 101 chr2L 18984257 intron Swip-1 - chr2L 18984308 intron Swip-1 - chr2L 18984358 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-41 224 chr2L 18990314 18990337 chr2L 18990425 18990447 5 110 3.0 1.5 2.2 1.6 133 chr2L 18990314 intergenic CG15170 - chr2L 18990380 intergenic CG15170 - chr2L 18990447 intergenic CG15170 - chr2L_5_18990001 chr2L_18990001 RAL-41 225 chr2L 19016244 19016265 chr2L 19016340 19016361 5 96 1.5 3.5 2.5 1.4 117 chr2L 19016244 intergenic not near genes chr2L 19016302 intergenic not near genes chr2L 19016361 intergenic not near genes chr2L_5_19015001 chr2L_19015001 RAL-41 226 chr2L 19024096 19024097 chr2L 21768291 21768291 5 2744195 5.0 10.5 7.8 0.6 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-41 227 chr2L 19182979 19183003 chr2L 19183058 19183082 5 79 0.0 1.5 0.8 2.8 103 chr2L 19182979 intergenic CR17567 -,CG42688 - chr2L 19183030 intergenic CR17567 -,CG42688 - chr2L 19183082 3` UTR CR17567 - chr2L_5_19180001 chr2L_19180001 RAL-41 228 chr2L 19183345 19183370 chr2L 19183422 19183450 11 79 1.5 3.5 2.5 3.1 105 chr2L 19183345 intron CR17567 - chr2L 19183398 3` UTR CR17567 - chr2L 19183450 3` UTR CR17567 - chr2L_11_19180001 chr2L_19180001 RAL-41 229 chr2L 19316197 19316228 chr2L 19316272 19316273 4 66 0.5 0.0 0.2 3.3 76 chr2L 19316197 intergenic not near genes chr2L 19316235 intergenic not near genes chr2L 19316273 intergenic not near genes chr2L_4_19315001 chr2L_19315001 RAL-41 230 chr2L 19331132 19331155 chr2L 19331233 19331249 5 97 2.0 4.5 3.2 1.2 117 chr2L 19331132 intergenic not near genes chr2L 19331190 intergenic not near genes chr2L 19331249 intergenic not near genes chr2L_5_19330001 chr2L_19330001 RAL-41 231 chr2L 19331671 19331692 chr2L 19331749 19331771 5 77 2.5 4.0 3.2 1.2 100 chr2L 19331671 intergenic not near genes chr2L 19331721 intergenic not near genes chr2L 19331771 intergenic not near genes chr2L_5_19330001 chr2L_19330001 RAL-41 232 chr2L 19345025 19345045 chr2L 19357233 19357253 blood 5 12208 0.5 1.5 1.0 2.5 12228 chr2L 19345025 intron dnt - chr2L 19351139 intron dnt - chr2L 19357253 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-41 233 chr2L 19380506 19380521 chr2L 19380586 19380601 5 80 2.0 0.5 1.2 2.3 95 chr2L 19380506 intergenic CG17350 + chr2L 19380554 intergenic CG17350 + chr2L 19380601 intergenic CG17350 + chr2L_5_19380001 chr2L_19380001 RAL-41 234 chr2L 19487204 19487236 chr2L 19487291 19487323 8 87 1.5 2.5 2.0 2.7 119 chr2L 19487204 intergenic CG13083 + chr2L 19487264 intergenic CG13083 + chr2L 19487323 intergenic CG13083 + chr2L_8_19485001 chr2L_19485001 RAL-41 235 chr2L 19543125 19543158 chr2L 19543208 19543242 7 83 0.5 1.0 0.8 3.9 117 chr2L 19543125 intron ref(2)P + chr2L 19543184 intron ref(2)P + chr2L 19543242 intron ref(2)P + chr2L_7_19540001 chr2L_19540001 RAL-41 236 chr2L 19559191 19559205 chr2L 19559274 19559293 4 87 2.5 2.5 2.5 1.1 102 chr2L 19559191 exon Tep5 + chr2L 19559242 exon Tep5 + chr2L 19559293 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-41 237 chr2L 19560004 19560038 chr2L 19560257 19560290 5 252 1.0 2.0 1.5 2.0 286 chr2L 19560004 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-41 238 chr2L 19620095 19620131 chr2L 19621084 19621104 jockey 11 987 2.0 3.5 2.8 2.9 1009 chr2L 19620095 intron Lar + chr2L 19620600 intron Lar + chr2L 19621104 intron Lar + chr2L_11_19620001 chr2L_19620001 RAL-41 239 chr2L 19638536 19638568 chr2L 19638624 19638655 8 88 4.5 1.5 3.0 2.0 119 chr2L 19638536 intron Lar + chr2L 19638596 intron Lar + chr2L 19638655 intron Lar + chr2L_8_19635001 chr2L_19635001 RAL-41 240 chr2L 19703543 19703562 chr2L 19712679 19712698 roo 5 9136 5.0 4.0 4.5 0.9 9155 chr2L 19703543 intron Lar + chr2L 19708120 intron Lar + chr2L 19712698 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-41 241 chr2L 19846250 19846276 chr2L 19846331 19846357 7 81 0.0 0.5 0.2 5.8 107 chr2L 19846250 intron sick + chr2L 19846304 intron sick + chr2L 19846357 intron sick + chr2L_7_19845001 chr2L_19845001 RAL-41 242 chr2L 19911296 19911319 chr2L 19911380 19911406 7 87 3.5 1.5 2.5 2.0 110 chr2L 19911296 intron,3` UTR sick +,CR43097 - chr2L 19911351 intron,3` UTR sick +,CR43097 - chr2L 19911406 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 RAL-41 243 chr2L 19947711 19947735 chr2L 19947797 19947821 5 86 1.5 1.0 1.2 2.3 110 chr2L 19947711 intron sick + chr2L 19947766 intron sick + chr2L 19947821 intron sick + chr2L_5_19945001 chr2L_19945001 RAL-41 244 chr2L 19994653 19994680 chr2L 19994732 19994759 6 78 0.5 1.0 0.8 3.3 106 chr2L 19994653 intron CG43861 - chr2L 19994706 intron CG43861 - chr2L 19994759 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-41 245 chr2L 20005876 20005900 chr2L 20010950 20010976 flea 4 5075 0.0 2.5 1.2 1.8 5100 chr2L 20005876 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-41 246 chr2L 20036533 20036543 chr2L 20036617 20036627 4 84 2.0 1.0 1.5 1.6 94 chr2L 20036533 intron sNPF + chr2L 20036580 intron sNPF + chr2L 20036627 intron sNPF + chr2L_4_20035001 chr2L_20035001 RAL-41 247 chr2L 20272119 20272127 chr2L 20282829 20282838 copia 4 10711 1.5 0.5 1.0 2.0 10719 chr2L 20272119 intergenic not near genes chr2L 20277478 intergenic not near genes chr2L 20282838 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-41 248 chr2L 20303162 20303185 chr2L 20310630 20310653 blood 4 7468 0.0 1.0 0.5 2.7 7491 chr2L 20303162 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310653 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-41 249 chr2L 20538068 20538093 chr2L 20538144 20538169 7 75 0.5 0.0 0.2 5.8 101 chr2L 20538068 intergenic not near genes chr2L 20538118 intergenic not near genes chr2L 20538169 intergenic not near genes chr2L_7_20535001 chr2L_20535001 RAL-41 250 chr2L 20568661 20568682 chr2L 20569051 20569069 X-element 4 389 1.0 2.0 1.5 1.6 408 chr2L 20568661 intron CR45347 + chr2L 20568865 intron CR45347 + chr2L 20569069 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-41 251 chr2L 20695797 20695825 chr2L 20695885 20695913 4 88 3.0 1.0 2.0 1.3 116 chr2L 20695797 intron Hr38 - chr2L 20695855 intron Hr38 - chr2L 20695913 intron Hr38 - chr2L_4_20695001 chr2L_20695001 RAL-41 252 chr2L 20947438 20947457 chr2L 20947517 20947536 11 79 0.5 2.0 1.2 5.0 98 chr2L 20947438 3` UTR CR44606 - chr2L 20947487 3` UTR CR44606 - chr2L 20947536 3` UTR CR44606 - chr2L_11_20945001 chr2L_20945001 RAL-41 253 chr2L 21020280 21020293 chr2L 21023956 21023969 NOF 4 3676 4.5 2.0 3.2 1.0 3689 chr2L 21020280 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023969 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-41 254 chr2L 21041137 21041166 chr2L 21049398 21049427 Tirant 5 8260 0.0 1.0 0.5 3.3 8290 chr2L 21041137 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-41 255 chr2L 21119295 21119315 chr2L 21119379 21119399 4 84 1.5 2.5 2.0 1.3 104 chr2L 21119295 intron Nhe2 + chr2L 21119347 intron Nhe2 + chr2L 21119399 intron Nhe2 + chr2L_4_21115001 chr2L_21115001 RAL-41 256 chr2L 21246515 21246540 chr2L 21246608 21246635 9 93 0.5 1.0 0.8 5.0 120 chr2L 21246515 intron Hr39 + chr2L 21246575 intron Hr39 + chr2L 21246635 intron Hr39 + chr2L_9_21245001 chr2L_21245001 RAL-41 257 chr2L 21981692 21981716 chr2L 21990856 21990881 roo 4 9165 1.0 4.0 2.5 1.1 9189 chr2L 21981692 exon CG2528 - chr2L 21986286 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-41 258 chr2L 22011932 22011946 chr2L 22012013 22012026 4 81 2.0 4.0 3.0 1.0 94 chr2L 22011932 intergenic not near genes chr2L 22011979 intergenic not near genes chr2L 22012026 intergenic not near genes chr2L_4_22010001 chr2L_22010001 RAL-41 259 chr2L 22199018 22199046 chr2L 22199107 22199136 7 90 0.0 2.0 1.0 3.5 118 chr2L 22199018 intron Ir40a - chr2L 22199077 intron Ir40a - chr2L 22199136 intron Ir40a - chr2L_7_22195001 chr2L_22195001 RAL-41 260 chr2L 22545979 22546007 chr2L 22546075 22546103 6 95 2.5 0.5 1.5 2.4 124 chr2L 22545979 intron CG17490 + chr2L 22546041 intron CG17490 + chr2L 22546103 intron CG17490 + chr2L_6_22545001 chr2L_22545001 RAL-41 261 chr2L 22679806 22679825 chr2L 22684578 22684597 F-element 5 4771 0.5 2.5 1.5 2.0 4791 chr2L 22679806 intron CG40006 - chr2L 22682202 intron CG40006 - chr2L 22684597 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-41 262 chr2R 3130227 3130257 chr2R 3130314 3130344 5 87 1.5 0.5 1.0 2.5 117 chr2R 3130227 intron CG42596 + chr2R 3130286 intron CG42596 + chr2R 3130344 intron CG42596 + chr2R_5_3130001 chr2R_3130001 RAL-41 263 chr2R 4015314 4015345 chr2R 4015484 4015510 4 170 1.0 0.0 0.5 2.7 196 chr2R 4015314 intron Haspin + chr2R 4015412 intron Haspin + chr2R 4015510 intron Haspin + chr2R_4_4015001 chr2R_4015001 RAL-41 264 chr2R 4387295 4387313 chr2R 4387446 4387463 4 150 0.5 0.0 0.2 3.3 168 chr2R 4387295 intron Gprk1 - chr2R 4387379 intron Gprk1 - chr2R 4387463 intron Gprk1 - chr2R_4_4385001 chr2R_4385001 RAL-41 265 chr2R 5080799 5080817 chr2R 5080889 5080907 4 88 0.5 0.5 0.5 2.7 108 chr2R 5080799 intergenic not near genes chr2R 5080853 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-41 266 chr2R 5476355 5476381 chr2R 5476899 5476925 8 544 2.5 3.0 2.8 2.1 570 chr2R 5476355 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476925 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-41 267 chr2R 5476384 5476385 chr2R 5476898 5476929 4 536 2.5 2.5 2.5 1.1 545 chr2R 5476384 intron CG30440 - chr2R 5476656 intron CG30440 - chr2R 5476929 intron CG30440 - chr2R_4_5475001 chr2R_5475001 RAL-41 268 chr2R 5484862 5484879 chr2R 5484948 5484966 4 86 0.0 1.0 0.5 2.7 104 chr2R 5484862 intron CG30440 - chr2R 5484914 intron CG30440 - chr2R 5484966 intron CG30440 - chr2R_4_5480001 chr2R_5480001 RAL-41 269 chr2R 5876879 5876903 chr2R 5876981 5877001 6 101 3.0 3.5 3.2 1.4 122 chr2R 5876879 intergenic not near genes chr2R 5876940 intergenic not near genes chr2R 5877001 intergenic not near genes chr2R_6_5875001 chr2R_5875001 RAL-41 270 chr2R 5886683 5886701 chr2R 5886804 5886822 5 121 0.5 1.5 1.0 2.5 139 chr2R 5886683 intergenic CR44125 + chr2R 5886752 intergenic CR44125 + chr2R 5886822 intergenic CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-41 271 chr2R 5947935 5947965 chr2R 5948086 5948116 6 150 1.0 0.0 0.5 4.0 181 chr2R 5947935 intergenic not near genes chr2R 5948026 intergenic not near genes chr2R 5948116 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-41 272 chr2R 6096714 6096751 chr2R 6101912 6101926 BS 7 5187 4.0 2.0 3.0 1.8 5212 chr2R 6096714 intron EcR - chr2R 6099320 intron EcR - chr2R 6101926 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-41 273 chr2R 6175607 6175619 chr2R 6175695 6175707 4 88 0.5 2.0 1.2 1.8 100 chr2R 6175607 3` UTR Cyp6w1 + chr2R 6175657 3` UTR Cyp6w1 + chr2R 6175707 3` UTR Cyp6w1 + chr2R_4_6175001 chr2R_6175001 RAL-41 274 chr2R 6178678 6178686 chr2R 6178765 6178772 4 86 2.5 0.0 1.2 1.8 94 chr2R 6178678 intergenic not near genes chr2R 6178725 intergenic not near genes chr2R 6178772 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-41 275 chr2R 6194686 6194703 chr2R 6194769 6194786 4 82 3.0 2.0 2.5 1.1 100 chr2R 6194686 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194786 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-41 276 chr2R 6494530 6494550 chr2R 6499288 6499312 F-element 5 4761 0.5 1.5 1.0 2.5 4782 chr2R 6494530 intergenic not near genes chr2R 6496921 intergenic not near genes chr2R 6499312 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-41 277 chr2R 6530772 6530796 chr2R 6530852 6530876 4 78 1.0 0.5 0.8 2.2 104 chr2R 6530772 intron jing + chr2R 6530824 intron jing + chr2R 6530876 intron jing + chr2R_4_6530001 chr2R_6530001 RAL-41 278 chr2R 7160573 7160585 chr2R 7160651 7160662 5 76 1.0 4.5 2.8 1.3 89 chr2R 7160573 intron pk + chr2R 7160618 intron pk + chr2R 7160662 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-41 279 chr2R 7235820 7235852 chr2R 7240912 7240944 jockey 11 5091 2.0 0.5 1.2 5.0 5124 chr2R 7235820 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_11_7235001 chr2R_7235001 RAL-41 280 chr2R 7411321 7411327 chr2R 7411407 7411411 4 85 1.5 2.0 1.8 1.4 90 chr2R 7411321 intergenic not near genes chr2R 7411366 intergenic not near genes chr2R 7411411 intergenic not near genes chr2R_4_7410001 chr2R_7410001 RAL-41 281 chr2R 7417912 7418169 chr2R 7417998 7418248 6 81 0.0 3.0 1.5 2.4 336 chr2R 7417912 intergenic not near genes chr2R 7418080 intergenic not near genes chr2R 7418248 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-41 282 chr2R 7692016 7692034 chr2R 7692097 7692115 4 81 1.0 1.0 1.0 2.0 99 chr2R 7692016 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692115 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-41 283 chr2R 7742636 7742649 chr2R 7742878 7742904 4 249 0.5 2.0 1.2 1.8 268 chr2R 7742636 intron,intron CG30497 -,CG45093 - chr2R 7742770 intron,intron CG30497 -,CG45093 - chr2R 7742904 intron,intron CG30497 -,CG45093 - chr2R_4_7740001 chr2R_7740001 RAL-41 284 chr2R 7869185 7869210 chr2R 7873971 7873975 Doc 6 4782 5.0 1.5 3.2 1.4 4790 chr2R 7869185 intron Dgk - chr2R 7871580 intron Dgk - chr2R 7873975 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-41 285 chr2R 7897142 7897153 chr2R 7897231 7897237 4 86 0.0 7.0 3.5 0.9 95 chr2R 7897142 intron CG30377 + chr2R 7897190 intron CG30377 + chr2R 7897237 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-41 286 chr2R 8015655 8015679 chr2R 8017678 8017702 5 2022 2.0 2.5 2.2 1.6 2047 chr2R 8015655 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-41 287 chr2R 8089262 8089284 chr2R 8089343 8089370 8 85 0.0 4.0 2.0 2.7 108 chr2R 8089262 3` UTR sut2 + chr2R 8089316 intergenic sut2 +,sut3 + chr2R 8089370 intergenic sut2 +,sut3 + chr2R_8_8085001 chr2R_8085001 RAL-41 288 chr2R 8160941 8160951 chr2R 8161031 8161038 1360 4 89 1.5 9.0 5.2 0.6 97 chr2R 8160941 intron CG8708 - chr2R 8160990 intron CG8708 - chr2R 8161038 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-41 289 chr2R 8307862 8307879 chr2R 8307942 8307959 7 80 1.0 1.5 1.2 3.2 97 chr2R 8307862 intergenic not near genes chr2R 8307910 intergenic not near genes chr2R 8307959 intergenic not near genes chr2R_7_8305001 chr2R_8305001 RAL-41 290 chr2R 8330863 8330881 chr2R 8331349 8331367 roo 4 486 1.5 2.5 2.0 1.3 504 chr2R 8330863 intron pdm3 + chr2R 8331115 intron pdm3 + chr2R 8331367 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-41 291 chr2R 8398210 8398244 chr2R 8402991 8403025 Doc 6 4781 3.0 1.0 2.0 2.0 4815 chr2R 8398210 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-41 292 chr2R 8488913 8488942 chr2R 8488998 8489027 4 85 1.0 2.0 1.5 1.6 114 chr2R 8488913 intron mtt - chr2R 8488970 intron mtt - chr2R 8489027 intron mtt - chr2R_4_8485001 chr2R_8485001 RAL-41 293 chr2R 8658239 8658258 chr2R 8658315 8658332 6 72 1.0 2.0 1.5 2.4 93 chr2R 8658239 intron ptc + chr2R 8658286 intron ptc + chr2R 8658332 intron ptc + chr2R_6_8655001 chr2R_8655001 RAL-41 294 chr2R 8722763 8722794 chr2R 8723004 8723032 pogo 9 239 2.0 1.0 1.5 3.6 269 chr2R 8722763 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-41 295 chr2R 9005936 9005961 chr2R 9006031 9006053 7 95 0.0 3.5 1.8 2.5 117 chr2R 9005936 intron Np - chr2R 9005994 intron Np - chr2R 9006053 intron Np - chr2R_7_9005001 chr2R_9005001 RAL-41 296 chr2R 9032000 9032009 chr2R 9032075 9032086 4 76 2.5 5.0 3.8 0.8 86 chr2R 9032000 intergenic not near genes chr2R 9032043 intergenic not near genes chr2R 9032086 intergenic not near genes chr2R_4_9030001 chr2R_9030001 RAL-41 297 chr2R 9055793 9055823 chr2R 9055868 9055903 4 77 1.0 0.5 0.8 2.2 110 chr2R 9055793 intron CG13743 - chr2R 9055848 intron CG13743 - chr2R 9055903 intron CG13743 - chr2R_4_9055001 chr2R_9055001 RAL-41 298 chr2R 9151311 9151324 chr2R 9157781 9157794 Burdock 4 6470 1.5 2.0 1.8 1.4 6483 chr2R 9151311 3` UTR CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157794 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-41 299 chr2R 9183132 9183143 chr2R 9183214 9183224 4 82 6.0 2.0 4.0 0.8 92 chr2R 9183132 intron ltd - chr2R 9183178 intron ltd - chr2R 9183224 intron ltd - chr2R_4_9180001 chr2R_9180001 RAL-41 300 chr2R 9216998 9217019 chr2R 9217074 9217095 5 75 1.0 3.5 2.2 1.6 97 chr2R 9216998 intergenic not near genes chr2R 9217046 intergenic not near genes chr2R 9217095 intergenic not near genes chr2R_5_9215001 chr2R_9215001 RAL-41 301 chr2R 9267978 9268007 chr2R 9268062 9268093 9 85 2.0 2.0 2.0 3.0 115 chr2R 9267978 intron Pkn - chr2R 9268036 intron Pkn - chr2R 9268093 intron Pkn - chr2R_9_9265001 chr2R_9265001 RAL-41 302 chr2R 9368125 9368152 chr2R 9368201 9368228 7 74 2.0 0.0 1.0 3.5 103 chr2R 9368125 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368228 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-41 303 chr2R 9412083 9412105 chr2R 9412192 9412214 4 110 1.5 1.5 1.5 1.6 131 chr2R 9412083 intron wun - chr2R 9412148 intron wun - chr2R 9412214 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-41 304 chr2R 9480075 9480099 chr2R 9490606 9490628 roo 5 10530 1.0 0.5 0.8 2.8 10553 chr2R 9480075 intergenic not near genes chr2R 9485352 intergenic not near genes chr2R 9490628 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-41 305 chr2R 9928420 9928440 chr2R 9928545 9928565 5 125 2.0 2.0 2.0 1.7 145 chr2R 9928420 intron Mef2 - chr2R 9928492 intron Mef2 - chr2R 9928565 intron Mef2 - chr2R_5_9925001 chr2R_9925001 RAL-41 306 chr2R 9935025 9935055 chr2R 9935107 9935137 7 82 2.5 1.5 2.0 2.3 112 chr2R 9935025 intron Mef2 - chr2R 9935081 intron Mef2 - chr2R 9935137 intron Mef2 - chr2R_7_9935001 chr2R_9935001 RAL-41 307 chr2R 10005849 10005882 chr2R 10007014 10007030 1360 8 1162 1.0 1.5 1.2 3.6 1181 chr2R 10005849 intron Pka-R2 - chr2R 10006440 intron Pka-R2 - chr2R 10007030 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-41 308 chr2R 10132201 10132222 chr2R 10132281 10132302 5 80 2.5 0.5 1.5 2.0 101 chr2R 10132201 intron gem + chr2R 10132252 intron gem + chr2R 10132302 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-41 309 chr2R 10318522 10318542 chr2R 10318608 10318628 6 86 2.0 2.0 2.0 2.0 106 chr2R 10318522 intron Ndg + chr2R 10318575 intron Ndg + chr2R 10318628 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-41 310 chr2R 10352675 10352705 chr2R 10352752 10352782 5 77 1.0 1.5 1.2 2.3 107 chr2R 10352675 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352782 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-41 311 chr2R 10409071 10409084 chr2R 10409147 10409159 5 76 0.0 1.5 0.8 2.8 88 chr2R 10409071 intron CG42732 - chr2R 10409115 intron CG42732 - chr2R 10409159 intron,exon CG42732 -,CG33477 - chr2R_5_10405001 chr2R_10405001 RAL-41 312 chr2R 10411821 10411836 chr2R 10411902 10411917 6 82 1.5 1.5 1.5 2.4 96 chr2R 10411821 intron CG42732 - chr2R 10411869 intron CG42732 - chr2R 10411917 intron CG42732 - chr2R_6_10410001 chr2R_10410001 RAL-41 313 chr2R 10469022 10469055 chr2R 10469147 10469180 11 125 0.5 1.5 1.0 5.5 158 chr2R 10469022 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-41 314 chr2R 10644058 10644086 chr2R 10644136 10644164 6 78 1.0 0.0 0.5 4.0 106 chr2R 10644058 intron Git - chr2R 10644111 intron Git - chr2R 10644164 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-41 315 chr2R 10862583 10862602 chr2R 10862694 10862712 7 110 1.0 2.0 1.5 2.8 129 chr2R 10862583 intron CG30015 - chr2R 10862648 intron CG30015 - chr2R 10862712 intron CG30015 - chr2R_7_10860001 chr2R_10860001 RAL-41 316 chr2R 10948030 10948060 chr2R 10955575 10955610 17.6 7 7549 0.5 3.0 1.8 2.5 7580 chr2R 10948030 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955610 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-41 317 chr2R 10959093 10959112 chr2R 10959172 10959191 4 78 0.5 2.5 1.5 1.6 98 chr2R 10959093 intergenic not near genes chr2R 10959142 intergenic not near genes chr2R 10959191 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-41 318 chr2R 11118172 11118176 chr2R 11118249 11118252 4 77 0.0 1.0 0.5 2.7 80 chr2R 11118172 3` UTR Cyp12d1-p - chr2R 11118212 3` UTR Cyp12d1-p - chr2R 11118252 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-41 319 chr2R 11179267 11179283 chr2R 11179353 11179369 4 86 3.0 3.0 3.0 1.0 102 chr2R 11179267 intron shn + chr2R 11179318 intron shn + chr2R 11179369 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-41 320 chr2R 11325654 11325670 chr2R 11325724 11325750 7 79 4.0 1.0 2.5 2.0 96 chr2R 11325654 intron sha + chr2R 11325702 intron sha + chr2R 11325750 intron sha + chr2R_7_11325001 chr2R_11325001 RAL-41 321 chr2R 11636431 11636441 chr2R 11636492 11636499 4 65 1.5 3.0 2.2 1.2 68 chr2R 11636431 intron CG9005 - chr2R 11636465 intron CG9005 - chr2R 11636499 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-41 322 chr2R 11638685 11638717 chr2R 11638934 11638966 4 249 1.5 0.0 0.8 2.2 281 chr2R 11638685 intron CG9005 - chr2R 11638826 intron CG9005 - chr2R 11638966 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-41 323 chr2R 11775936 11775966 chr2R 11776018 11776048 5 82 0.5 2.0 1.2 2.3 112 chr2R 11775936 intron ths + chr2R 11775992 intron ths + chr2R 11776048 intron ths + chr2R_5_11775001 chr2R_11775001 RAL-41 324 chr2R 11822978 11823005 chr2R 11823055 11823082 9 76 1.5 1.5 1.5 3.6 104 chr2R 11822978 intergenic not near genes chr2R 11823030 intergenic not near genes chr2R 11823082 intergenic not near genes chr2R_9_11820001 chr2R_11820001 RAL-41 325 chr2R 12073145 12073419 chr2R 12073225 12073508 9 88 1.0 2.0 1.5 3.6 363 chr2R 12073145 intron CG8888 - chr2R 12073326 intron CG8888 - chr2R 12073508 intron CG8888 - chr2R_9_12070001 chr2R_12070001 RAL-41 326 chr2R 12104682 12104703 chr2R 12104761 12104783 8 78 4.0 1.5 2.8 2.1 101 chr2R 12104682 intron jeb - chr2R 12104732 intron jeb - chr2R 12104783 intron jeb - chr2R_8_12100001 chr2R_12100001 RAL-41 327 chr2R 12110227 12110245 chr2R 12110318 12110328 6 89 2.0 2.0 2.0 2.0 101 chr2R 12110227 intron jeb - chr2R 12110278 intron jeb - chr2R 12110328 intron jeb - chr2R_6_12110001 chr2R_12110001 RAL-41 328 chr2R 12146470 12146502 chr2R 12147592 12147624 8 1120 15.5 16.0 15.8 0.5 1154 chr2R 12146470 intron,3` UTR Hen1 +,CG8878 - chr2R 12147047 intron,exon Hen1 +,CG8878 - chr2R 12147624 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-41 329 chr2R 12145910 12145947 chr2R 12148603 12148640 7 2697 15.5 32.0 23.8 0.3 2730 chr2R 12145910 exon Hen1 + chr2R 12147275 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_7_12145001 chr2R_12145001 RAL-41 330 chr2R 12187472 12187508 chr2R 12190088 12190124 41 2620 86.5 68.0 77.2 0.5 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_41_12185001 chr2R_12185001 RAL-41 331 chr2R 12385350 12385372 chr2R 12385431 12385452 4 80 0.0 2.0 1.0 2.0 102 chr2R 12385350 intergenic not near genes chr2R 12385401 intergenic not near genes chr2R 12385452 intergenic not near genes chr2R_4_12385001 chr2R_12385001 RAL-41 332 chr2R 12501689 12501722 chr2R 12503851 12503877 Rt1c 4 2160 1.0 2.5 1.8 1.4 2188 chr2R 12501689 intron fdl - chr2R 12502783 intron fdl - chr2R 12503877 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-41 333 chr2R 12565581 12565591 chr2R 12565964 12565974 4 382 0.5 3.0 1.8 1.4 393 chr2R 12565581 intergenic not near genes chr2R 12565778 intergenic Cyp301a1 + chr2R 12565974 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-41 334 chr2R 12789299 12789323 chr2R 12797659 12797682 roo 4 8361 1.0 2.5 1.8 1.4 8383 chr2R 12789299 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797682 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-41 335 chr2R 12819444 12819474 chr2R 12824516 12824547 jockey 4 5072 3.0 2.5 2.8 1.1 5103 chr2R 12819444 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-41 336 chr2R 12951673 12951693 chr2R 12951754 12951774 4 81 1.5 1.5 1.5 1.6 101 chr2R 12951673 intron,intron CG44251 -,CG44250 - chr2R 12951724 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-41 337 chr2R 13136836 13136863 chr2R 13141634 13141661 Doc 6 4796 4.0 2.5 3.2 1.4 4825 chr2R 13136836 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-41 338 chr2R 13167411 13167425 chr2R 13167493 13167507 5 82 0.5 0.5 0.5 3.3 96 chr2R 13167411 intron GLaz - chr2R 13167459 intron GLaz - chr2R 13167507 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-41 339 chr2R 13438871 13438889 chr2R 13440189 13440207 9 1318 8.0 18.0 13.0 0.6 1336 chr2R 13438871 5` UTR CG42321 - chr2R 13439539 3` UTR cnn - chr2R 13440207 exon cnn - chr2R_9_13435001 chr2R_13435001 RAL-41 340 chr2R 13580499 13580525 chr2R 13580849 13580875 jockey 4 348 3.0 3.0 3.0 1.0 376 chr2R 13580499 3` UTR CG6191 - chr2R 13580687 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580875 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-41 341 chr2R 13768981 13769003 chr2R 13769078 13769102 7 96 3.0 2.0 2.5 2.0 121 chr2R 13768981 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769102 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-41 342 chr2R 13888764 13888789 chr2R 13888841 13888866 5 77 3.5 0.0 1.8 1.8 102 chr2R 13888764 intron shot - chr2R 13888815 intron shot - chr2R 13888866 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-41 343 chr2R 14093438 14093443 chr2R 14109589 14109594 4 16151 4.0 2.0 3.0 1.0 16156 chr2R 14093438 intron Prosap - chr2R 14101516 intron Prosap - chr2R 14109594 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-41 344 chr2R 14342217 14342240 chr2R 14342293 14342316 6 76 4.0 3.0 3.5 1.3 99 chr2R 14342217 intron Shroom + chr2R 14342266 intron Shroom + chr2R 14342316 intron Shroom + chr2R_6_14340001 chr2R_14340001 RAL-41 345 chr2R 14393865 14393897 chr2R 14393949 14393982 10 83 3.0 0.5 1.8 3.6 117 chr2R 14393865 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393982 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-41 346 chr2R 14497388 14497419 chr2R 14498554 14498580 1360 6 1165 1.0 1.0 1.0 3.0 1192 chr2R 14497388 3` UTR Cpsf160 - chr2R 14497984 intron Cpsf160 - chr2R 14498580 3` UTR Cpsf160 - chr2R_6_14495001 chr2R_14495001 RAL-41 347 chr2R 14539151 14539183 chr2R 14539380 14539412 5 229 1.5 1.0 1.2 2.3 261 chr2R 14539151 intron ttv + chr2R 14539282 intron ttv + chr2R 14539412 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-41 348 chr2R 14544208 14544234 chr2R 14544430 14544455 4 222 1.5 2.5 2.0 1.3 247 chr2R 14544208 intron,3` UTR ttv +,CG30076 - chr2R 14544332 intron,3` UTR ttv +,CG30076 - chr2R 14544455 intron,exon ttv +,CG30076 - chr2R_4_14540001 chr2R_14540001 RAL-41 349 chr2R 14565556 14565578 chr2R 14565633 14565654 4 76 2.5 1.0 1.8 1.4 98 chr2R 14565556 intron ttv + chr2R 14565605 intron ttv + chr2R 14565654 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-41 350 chr2R 14591294 14591320 chr2R 14591398 14591424 6 101 0.0 2.0 1.0 3.0 130 chr2R 14591294 intron CG12869 + chr2R 14591359 intron CG12869 + chr2R 14591424 intron CG12869 + chr2R_6_14590001 chr2R_14590001 RAL-41 351 chr2R 14911700 14911715 chr2R 14911823 14911838 5 123 1.5 1.5 1.5 2.0 138 chr2R 14911700 intron CG10249 - chr2R 14911769 intron CG10249 - chr2R 14911838 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-41 352 chr2R 15004729 15004760 chr2R 15005058 15005089 jockey 4 329 1.5 1.0 1.2 1.8 360 chr2R 15004729 intergenic not near genes chr2R 15004909 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-41 353 chr2R 15015459 15015485 chr2R 15022882 15022908 mdg1 8 7423 2.0 2.0 2.0 2.7 7449 chr2R 15015459 intron hbs + chr2R 15019184 intron hbs + chr2R 15022908 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-41 354 chr2R 15074824 15074828 chr2R 15075064 15075089 4 251 1.5 1.5 1.5 1.6 265 chr2R 15074824 intergenic not near genes chr2R 15074956 intergenic not near genes chr2R 15075089 intergenic not near genes chr2R_4_15070001 chr2R_15070001 RAL-41 355 chr2R 15119326 15119349 chr2R 15127807 15127830 Tirant 5 8480 7.0 3.0 5.0 0.8 8504 chr2R 15119326 intron chn + chr2R 15123578 intron chn + chr2R 15127830 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-41 356 chr2R 15133483 15133505 chr2R 15133562 15133583 6 79 0.5 1.5 1.0 3.0 100 chr2R 15133483 intron chn + chr2R 15133533 intron chn + chr2R 15133583 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-41 357 chr2R 15137974 15138000 chr2R 15138054 15138081 4 80 1.5 0.0 0.8 2.2 107 chr2R 15137974 intron chn + chr2R 15138028 intron chn + chr2R 15138081 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-41 358 chr2R 15679109 15679128 chr2R 15679193 15679212 5 84 2.0 1.0 1.5 2.0 103 chr2R 15679109 intergenic CG8207 -,Vha14-1 - chr2R 15679160 intergenic CG8207 -,Vha14-1 - chr2R 15679212 intergenic Vha14-1 -,CG8207 - chr2R_5_15675001 chr2R_15675001 RAL-41 359 chr2R 15685366 15685387 chr2R 15685469 15685486 4 102 4.5 1.5 3.0 1.0 120 chr2R 15685366 intron,exon Ranbp11 +,CG30082 - chr2R 15685426 intron,intron Ranbp11 +,CG30082 - chr2R 15685486 intron,intron Ranbp11 +,CG30082 - chr2R_4_15685001 chr2R_15685001 RAL-41 360 chr2R 16235822 16235851 chr2R 16235926 16235956 7 104 2.0 3.0 2.5 2.0 134 chr2R 16235822 intergenic not near genes chr2R 16235889 intergenic not near genes chr2R 16235956 intergenic not near genes chr2R_7_16235001 chr2R_16235001 RAL-41 361 chr2R 16534256 16534280 chr2R 16534391 16534415 4 134 1.5 1.5 1.5 1.6 159 chr2R 16534256 intergenic not near genes chr2R 16534336 intergenic not near genes chr2R 16534415 intergenic not near genes chr2R_4_16530001 chr2R_16530001 RAL-41 362 chr2R 16536770 16536792 chr2R 16537162 16537184 6 392 3.5 3.5 3.5 1.3 414 chr2R 16536770 exon loopin-1 + chr2R 16536977 3` UTR loopin-1 + chr2R 16537184 intergenic loopin-1 + chr2R_6_16535001 chr2R_16535001 RAL-41 363 chr2R 16539641 16539671 chr2R 16544847 16544880 copia 8 5207 0.0 0.5 0.2 6.7 5239 chr2R 16539641 intergenic not near genes chr2R 16542260 intergenic not near genes chr2R 16544880 intergenic not near genes chr2R_8_16540001 chr2R_16540001 RAL-41 364 chr2R 16571875 16571898 chr2R 16571970 16571993 5 95 0.0 2.0 1.0 2.5 118 chr2R 16571875 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16571993 intergenic CG4927 + chr2R_5_16570001 chr2R_16570001 RAL-41 365 chr2R 16617069 16617090 chr2R 16617143 16617169 9 78 0.0 2.5 1.2 4.1 100 chr2R 16617069 intron CG5065 + chr2R 16617119 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_9_16615001 chr2R_16615001 RAL-41 366 chr2R 16775654 16775672 chr2R 16775921 16775939 5 267 1.5 1.5 1.5 2.0 285 chr2R 16775654 3` UTR Arp53D + chr2R 16775796 intergenic Arp53D + chr2R 16775939 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-41 367 chr2R 16910232 16910245 chr2R 16910329 16910344 5 98 3.5 2.5 3.0 1.2 112 chr2R 16910232 intergenic not near genes chr2R 16910288 intergenic not near genes chr2R 16910344 intergenic not near genes chr2R_5_16910001 chr2R_16910001 RAL-41 368 chr2R 17077962 17077988 chr2R 17078103 17078128 8 141 0.5 1.5 1.0 4.0 166 chr2R 17077962 intron CG30460 - chr2R 17078045 intron CG30460 - chr2R 17078128 intron CG30460 - chr2R_8_17075001 chr2R_17075001 RAL-41 369 chr2R 17176357 17176389 chr2R 17182546 17182579 diver 8 6188 1.5 1.0 1.2 3.6 6222 chr2R 17176357 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_8_17175001 chr2R_17175001 RAL-41 370 chr2R 17236514 17236528 chr2R 17241717 17241732 copia 4 5204 1.5 2.5 2.0 1.3 5218 chr2R 17236514 intron mbl + chr2R 17239123 intron mbl + chr2R 17241732 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-41 371 chr2R 17338429 17338448 chr2R 17338505 17338519 6 75 0.5 1.5 1.0 3.0 90 chr2R 17338429 intron mbl + chr2R 17338474 intron mbl + chr2R 17338519 intron mbl + chr2R_6_17335001 chr2R_17335001 RAL-41 372 chr2R 17389291 17389296 chr2R 17389369 17389385 4 84 2.0 1.0 1.5 1.6 94 chr2R 17389291 intergenic CR44344 - chr2R 17389338 intergenic CR44344 - chr2R 17389385 intergenic CR44344 - chr2R_4_17385001 chr2R_17385001 RAL-41 373 chr2R 17459006 17459033 chr2R 17459091 17459117 5 85 2.5 2.5 2.5 1.4 111 chr2R 17459006 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459117 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-41 374 chr2R 17627750 17627785 chr2R 17628077 17628112 6 327 1.0 1.0 1.0 3.0 362 chr2R 17627750 intron CG10936 - chr2R 17627931 intron CG10936 - chr2R 17628112 intron CG10936 - chr2R_6_17625001 chr2R_17625001 RAL-41 375 chr2R 17708394 17708418 chr2R 17708475 17708499 4 81 0.0 0.5 0.2 3.3 105 chr2R 17708394 intron CG6424 - chr2R 17708446 intron CG6424 - chr2R 17708499 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-41 376 chr2R 17784025 17784056 chr2R 17784266 17784296 pogo 8 241 6.0 4.5 5.2 1.3 271 chr2R 17784025 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-41 377 chr2R 17876346 17876370 chr2R 17876577 17876600 4 230 2.0 1.5 1.8 1.4 254 chr2R 17876346 intron Elk + chr2R 17876473 intron Elk + chr2R 17876600 intron Elk + chr2R_4_17875001 chr2R_17875001 RAL-41 378 chr2R 17982930 17982949 chr2R 17983014 17983034 5 84 0.5 1.5 1.0 2.5 104 chr2R 17982930 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983034 intron dpr13 - chr2R_5_17980001 chr2R_17980001 RAL-41 379 chr2R 18156170 18156193 chr2R 18156469 18156484 4 293 22.5 24.0 23.2 0.2 314 chr2R 18156170 intron lolal - chr2R 18156327 intron lolal - chr2R 18156484 intron lolal - chr2R_4_18155001 chr2R_18155001 RAL-41 380 chr2R 18233469 18233490 chr2R 18233555 18233576 7 84 1.0 4.5 2.8 1.8 107 chr2R 18233469 5` UTR fj + chr2R 18233522 5` UTR fj + chr2R 18233576 5` UTR fj + chr2R_7_18230001 chr2R_18230001 RAL-41 381 chr2R 18289440 18289460 chr2R 18289542 18289562 9 102 0.0 3.0 1.5 3.6 122 chr2R 18289440 intron,intron sbb -,CG14502 + chr2R 18289501 intron,intron sbb -,CG14502 + chr2R 18289562 exon,intron sbb -,CG14502 + chr2R_9_18285001 chr2R_18285001 RAL-41 382 chr2R 18408306 18408315 chr2R 18408414 18408436 5 118 1.5 4.0 2.8 1.3 130 chr2R 18408306 exon GstE8 + chr2R 18408371 exon GstE8 + chr2R 18408436 exon GstE8 + chr2R_5_18405001 chr2R_18405001 RAL-41 383 chr2R 18590868 18590895 chr2R 18600019 18600046 roo 6 9152 4.0 2.0 3.0 1.5 9178 chr2R 18590868 intron GEFmeso - chr2R 18595457 intron GEFmeso - chr2R 18600046 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-41 384 chr2R 18601135 18601156 chr2R 18601210 18601233 5 76 4.0 2.5 3.2 1.2 98 chr2R 18601135 intron GEFmeso - chr2R 18601184 intron GEFmeso - chr2R 18601233 intron GEFmeso - chr2R_5_18600001 chr2R_18600001 RAL-41 385 chr2R 18678526 18678539 chr2R 18678646 18678658 4 120 3.0 0.0 1.5 1.6 132 chr2R 18678526 intergenic CG44434 -,CG44435 - chr2R 18678592 intergenic CG44434 -,CG44435 - chr2R 18678658 intergenic CG44434 -,CG44435 - chr2R_4_18675001 chr2R_18675001 RAL-41 386 chr2R 18808164 18808172 chr2R 18808240 18808247 4 76 0.5 0.0 0.2 3.3 83 chr2R 18808164 intergenic CG15096 - chr2R 18808206 intergenic CG15096 - chr2R 18808247 intergenic CG15096 - chr2R_4_18805001 chr2R_18805001 RAL-41 387 chr2R 18830381 18830409 chr2R 18830465 18830476 5 77 3.0 2.5 2.8 1.3 95 chr2R 18830381 5` UTR CG15082 + chr2R 18830428 5` UTR CG15082 + chr2R 18830476 5` UTR CG15082 + chr2R_5_18830001 chr2R_18830001 RAL-41 388 chr2R 18903257 18903277 chr2R 18903363 18903363 6 103 1.5 1.0 1.2 2.7 106 chr2R 18903257 intron sano + chr2R 18903310 intron sano + chr2R 18903363 intron sano + chr2R_6_18900001 chr2R_18900001 RAL-41 389 chr2R 18930987 18931005 chr2R 18931305 18931323 5 318 2.0 1.0 1.5 2.0 336 chr2R 18930987 intron sano + chr2R 18931155 intron sano + chr2R 18931323 intron sano + chr2R_5_18930001 chr2R_18930001 RAL-41 390 chr2R 19026049 19026061 chr2R 19026150 19026161 4 100 5.5 0.5 3.0 1.0 112 chr2R 19026049 intron 5-HT1B - chr2R 19026105 intron 5-HT1B - chr2R 19026161 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-41 391 chr2R 19601833 19601863 chr2R 19601921 19601948 5 87 2.0 3.0 2.5 1.4 115 chr2R 19601833 intron sm - chr2R 19601890 intron sm - chr2R 19601948 intron sm - chr2R_5_19600001 chr2R_19600001 RAL-41 392 chr2R 19776596 19776630 chr2R 19779918 19779952 jockey 6 3323 2.0 2.0 2.0 2.0 3356 chr2R 19776596 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-41 393 chr2R 19797377 19797398 chr2R 19797478 19797495 6 100 1.0 0.5 0.8 3.3 118 chr2R 19797377 intergenic not near genes chr2R 19797436 intergenic not near genes chr2R 19797495 intergenic not near genes chr2R_6_19795001 chr2R_19795001 RAL-41 394 chr2R 19914846 19914862 chr2R 19922258 19922274 mdg1 5 7412 2.0 1.5 1.8 1.8 7428 chr2R 19914846 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922274 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-41 395 chr2R 19943279 19943292 chr2R 19943389 19943402 5 110 0.0 6.0 3.0 1.2 123 chr2R 19943279 intergenic not near genes chr2R 19943340 intergenic not near genes chr2R 19943402 intergenic not near genes chr2R_5_19940001 chr2R_19940001 RAL-41 396 chr2R 19957433 19957447 chr2R 19962635 19962649 copia 5 5202 2.5 1.0 1.8 1.8 5216 chr2R 19957433 intergenic CG44623 + chr2R 19960041 intergenic not near genes chr2R 19962649 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-41 397 chr2R 20008185 20008203 chr2R 20008274 20008292 5 89 0.5 2.5 1.5 2.0 107 chr2R 20008185 intergenic not near genes chr2R 20008238 intergenic not near genes chr2R 20008292 intergenic not near genes chr2R_5_20005001 chr2R_20005001 RAL-41 398 chr2R 20016046 20016063 chr2R 20016119 20016148 6 82 1.5 1.0 1.2 2.7 102 chr2R 20016046 intergenic CR44630 - chr2R 20016097 intergenic CR44630 - chr2R 20016148 intergenic CR44630 - chr2R_6_20015001 chr2R_20015001 RAL-41 399 chr2R 20080616 20080624 chr2R 20080685 20080701 5 74 0.0 0.0 0.0 5.0 85 chr2R 20080616 intergenic not near genes chr2R 20080658 intergenic not near genes chr2R 20080701 intergenic not near genes chr2R_5_20080001 chr2R_20080001 RAL-41 400 chr2R 20395174 20395195 chr2R 20395249 20395273 4 77 1.5 0.5 1.0 2.0 99 chr2R 20395174 intergenic not near genes chr2R 20395224 intergenic not near genes chr2R 20395273 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-41 401 chr2R 20408529 20408550 chr2R 20408599 20408626 7 76 2.0 2.5 2.2 2.2 97 chr2R 20408529 intergenic not near genes chr2R 20408578 intergenic not near genes chr2R 20408626 intergenic not near genes chr2R_7_20405001 chr2R_20405001 RAL-41 402 chr2R 20424416 20424452 chr2R 20424497 20424533 5 81 0.5 2.5 1.5 2.0 117 chr2R 20424416 5` UTR CG12484 + chr2R 20424474 5` UTR CG12484 + chr2R 20424533 5` UTR CG12484 + chr2R_5_20420001 chr2R_20420001 RAL-41 403 chr2R 20523037 20523068 chr2R 20523148 20523158 7 107 1.5 1.5 1.5 2.8 121 chr2R 20523037 intergenic not near genes chr2R 20523098 intergenic not near genes chr2R 20523158 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-41 404 chr2R 20541985 20541998 chr2R 20542063 20542075 4 78 2.0 0.5 1.2 1.8 90 chr2R 20541985 intergenic not near genes chr2R 20542030 intergenic not near genes chr2R 20542075 intergenic not near genes chr2R_4_20540001 chr2R_20540001 RAL-41 405 chr2R 20812242 20812275 chr2R 20812322 20812355 7 80 1.0 2.5 1.8 2.5 113 chr2R 20812242 intergenic not near genes chr2R 20812298 intergenic not near genes chr2R 20812355 intergenic not near genes chr2R_7_20810001 chr2R_20810001 RAL-41 406 chr2R 20901036 20901048 chr2R 20901150 20901159 5 114 2.5 0.0 1.2 2.3 123 chr2R 20901036 intron otp - chr2R 20901098 intron otp - chr2R 20901159 intron otp - chr2R_5_20900001 chr2R_20900001 RAL-41 407 chr2R 20910851 20910855 chr2R 20910934 20910940 4 84 1.0 0.0 0.5 2.7 89 chr2R 20910851 intergenic CG9235 + chr2R 20910896 intergenic CG9235 + chr2R 20910940 intergenic CG9235 + chr2R_4_20910001 chr2R_20910001 RAL-41 408 chr2R 20962907 20962930 chr2R 20963004 20963027 7 94 1.5 2.0 1.8 2.5 120 chr2R 20962907 intergenic not near genes chr2R 20962967 intergenic not near genes chr2R 20963027 intergenic not near genes chr2R_7_20960001 chr2R_20960001 RAL-41 409 chr2R 21151122 21151145 chr2R 21153755 21153778 opus 9 2631 2.0 2.5 2.2 2.8 2656 chr2R 21151122 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153778 intron CG30389 - chr2R_9_21150001 chr2R_21150001 RAL-41 410 chr2R 21363137 21363144 chr2R 21363235 21363242 4 98 0.0 0.0 0.0 4.0 105 chr2R 21363137 intron cv-2 - chr2R 21363190 intron cv-2 - chr2R 21363242 intron cv-2 - chr2R_4_21360001 chr2R_21360001 RAL-41 411 chr2R 21508077 21508092 chr2R 21508158 21508173 5 80 1.0 3.0 2.0 1.7 96 chr2R 21508077 intron MESK2 + chr2R 21508125 intron MESK2 + chr2R 21508173 intron MESK2 + chr2R_5_21505001 chr2R_21505001 RAL-41 412 chr2R 21648722 21648735 chr2R 21648944 21648956 4 221 5.5 2.5 4.0 0.8 234 chr2R 21648722 intron CG10082 + chr2R 21648839 intron CG10082 + chr2R 21648956 intron CG10082 + chr2R_4_21645001 chr2R_21645001 RAL-41 413 chr2R 21700155 21700182 chr2R 21700240 21700266 7 84 2.0 0.5 1.2 3.2 111 chr2R 21700155 intron HmgZ - chr2R 21700210 intron HmgZ - chr2R 21700266 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-41 414 chr2R 21710948 21710975 chr2R 21711030 21711057 8 82 0.5 0.5 0.5 5.3 109 chr2R 21710948 intron,intron HmgD +,CG30403 - chr2R 21711002 intron,intron HmgD +,CG30403 - chr2R 21711057 intron,intron HmgD +,CG30403 - chr2R_8_21710001 chr2R_21710001 RAL-41 415 chr2R 21738279 21738284 chr2R 21747439 21747444 roo 4 9160 4.5 2.0 3.2 1.0 9165 chr2R 21738279 intergenic not near genes chr2R 21742862 intergenic not near genes chr2R 21747444 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-41 416 chr2R 21738287 21738308 chr2R 21747437 21747468 roo 4 9153 4.0 2.0 3.0 1.0 9181 chr2R 21738287 intergenic not near genes chr2R 21742878 intergenic not near genes chr2R 21747468 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-41 417 chr2R 21753083 21753113 chr2R 21753568 21753598 roo 6 485 0.5 3.0 1.8 2.1 515 chr2R 21753083 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-41 418 chr2R 21809532 21809557 chr2R 21817770 21817797 roo 7 8240 2.5 1.0 1.8 2.5 8265 chr2R 21809532 intergenic not near genes chr2R 21813664 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-41 419 chr2R 21922592 21922621 chr2R 21922668 21922696 5 76 1.5 0.5 1.0 2.5 104 chr2R 21922592 intron Fili + chr2R 21922644 intron Fili + chr2R 21922696 intron Fili + chr2R_5_21920001 chr2R_21920001 RAL-41 420 chr2R 21963206 21963218 chr2R 21963289 21963303 4 84 0.5 2.0 1.2 1.8 97 chr2R 21963206 intergenic not near genes chr2R 21963254 intergenic not near genes chr2R 21963303 intergenic not near genes chr2R_4_21960001 chr2R_21960001 RAL-41 421 chr2R 22095962 22095987 chr2R 22096044 22096069 8 83 1.5 1.0 1.2 3.6 107 chr2R 22095962 intron CG11073 - chr2R 22096016 intron CG11073 - chr2R 22096069 intron CG11073 - chr2R_8_22095001 chr2R_22095001 RAL-41 422 chr2R 22135444 22135462 chr2R 22135551 22135569 7 108 3.5 2.0 2.8 1.8 125 chr2R 22135444 intergenic not near genes chr2R 22135506 intergenic not near genes chr2R 22135569 intergenic not near genes chr2R_7_22135001 chr2R_22135001 RAL-41 423 chr2R 22349690 22349715 chr2R 22351474 22351499 jockey 6 1782 6.0 2.5 4.2 1.2 1809 chr2R 22349690 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351499 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-41 424 chr2R 22360381 22360397 chr2R 22360814 22360830 jockey 4 432 5.0 0.5 2.8 1.1 449 chr2R 22360381 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-41 425 chr2R 22499850 22499887 chr2R 22499926 22499963 14 76 0.0 1.5 0.8 7.8 113 chr2R 22499850 intron px - chr2R 22499906 intron px - chr2R 22499963 intron px - chr2R_14_22495001 chr2R_22495001 RAL-41 426 chr2R 22525759 22525774 chr2R 22529318 22529333 jockey 4 3559 3.0 2.0 2.5 1.1 3574 chr2R 22525759 intron px - chr2R 22527546 intron px - chr2R 22529333 intron px - chr2R_4_22525001 chr2R_22525001 RAL-41 427 chr2R 22545617 22545645 chr2R 22545696 22545710 7 77 2.5 1.5 2.0 2.3 93 chr2R 22545617 intron px - chr2R 22545664 intron px - chr2R 22545710 intron px - chr2R_7_22545001 chr2R_22545001 RAL-41 428 chr2R 22663140 22663161 chr2R 22663220 22663240 4 80 1.0 1.0 1.0 2.0 100 chr2R 22663140 3` UTR CG42566 + chr2R 22663190 3` UTR CG42566 + chr2R 22663240 3` UTR CG42566 + chr2R_4_22660001 chr2R_22660001 RAL-41 429 chr2R 22723235 22723264 chr2R 22723311 22723340 9 76 0.5 1.5 1.0 4.5 105 chr2R 22723235 intron jbug - chr2R 22723288 intron jbug - chr2R 22723340 intron jbug - chr2R_9_22720001 chr2R_22720001 RAL-41 430 chr2R 22774964 22774979 chr2R 22775380 22775398 jockey 4 418 4.5 2.5 3.5 0.9 434 chr2R 22774964 intron CG42260 - chr2R 22775181 intron CG42260 - chr2R 22775398 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-41 431 chr2R 23052660 23052676 chr2R 23052736 23052751 7 76 1.0 1.0 1.0 3.5 91 chr2R 23052660 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052751 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-41 432 chr2R 23188564 23188586 chr2R 23188642 23188664 4 78 1.0 1.5 1.2 1.8 100 chr2R 23188564 intron CG34371 - chr2R 23188614 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-41 433 chr2R 23243811 23243841 chr2R 23243898 23243924 8 86 1.5 2.0 1.8 2.9 113 chr2R 23243811 intergenic yip3 - chr2R 23243868 intergenic yip3 - chr2R 23243924 intergenic yip3 - chr2R_8_23240001 chr2R_23240001 RAL-41 434 chr2R 23278277 23278292 chr2R 23278485 23278499 6 208 2.5 2.0 2.2 1.9 222 chr2R 23278277 intergenic not near genes chr2R 23278388 intergenic not near genes chr2R 23278499 intergenic not near genes chr2R_6_23275001 chr2R_23275001 RAL-41 435 chr2R 23356278 23356308 chr2R 23356367 23356392 6 88 1.0 1.0 1.0 3.0 114 chr2R 23356278 3` UTR Rpi + chr2R 23356335 3` UTR Rpi + chr2R 23356392 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-41 436 chr2R 23422647 23422680 chr2R 23422727 23422760 17 79 1.0 1.5 1.2 7.7 113 chr2R 23422647 intron CG9815 - chr2R 23422704 intron CG9815 - chr2R 23422760 intron CG9815 - chr2R_17_23420001 chr2R_23420001 RAL-41 437 chr2R 23463386 23463419 chr2R 23463465 23463497 9 78 4.0 3.5 3.8 1.9 111 chr2R 23463386 intron CG43795 + chr2R 23463442 intron CG43795 + chr2R 23463497 intron CG43795 + chr2R_9_23460001 chr2R_23460001 RAL-41 438 chr2R 23529576 23529606 chr2R 23537151 23537182 412 8 7571 4.5 5.0 4.8 1.4 7606 chr2R 23529576 intron bw - chr2R 23533379 intron bw - chr2R 23537182 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-41 439 chr2R 23607038 23607186 chr2R 23607119 23607279 8 82 2.5 1.0 1.8 2.9 241 chr2R 23607038 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607279 intron CG17664 - chr2R_8_23605001 chr2R_23605001 RAL-41 440 chr2R 23636718 23636744 chr2R 23636796 23636822 7 77 1.0 2.5 1.8 2.5 104 chr2R 23636718 intron retn + chr2R 23636770 intron retn + chr2R 23636822 intron retn + chr2R_7_23635001 chr2R_23635001 RAL-41 441 chr2R 23726226 23726257 chr2R 23726316 23726337 12 88 2.0 5.5 3.8 2.5 111 chr2R 23726226 intron Sesn + chr2R 23726282 intron Sesn + chr2R 23726337 intron Sesn + chr2R_12_23725001 chr2R_23725001 RAL-41 442 chr2R 23739184 23739212 chr2R 23739261 23739286 7 76 4.5 0.0 2.2 2.2 102 chr2R 23739184 intron egl - chr2R 23739235 intron egl - chr2R 23739286 intron egl - chr2R_7_23735001 chr2R_23735001 RAL-41 443 chr2R 23914326 23914329 chr2R 23921923 23921948 412 4 7609 1.5 3.0 2.2 1.2 7622 chr2R 23914326 exon kcc + chr2R 23918137 intron kcc + chr2R 23921948 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-41 444 chr2R 23986515 23986534 chr2R 23986595 23986614 5 80 0.5 1.5 1.0 2.5 99 chr2R 23986515 intron Phm - chr2R 23986564 intron Phm - chr2R 23986614 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-41 445 chr2R 24031382 24031410 chr2R 24031466 24031494 4 84 1.0 1.0 1.0 2.0 112 chr2R 24031382 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_4_24030001 chr2R_24030001 RAL-41 446 chr2R 24147081 24147094 chr2R 24154655 24154662 412 5 7572 2.0 5.0 3.5 1.1 7581 chr2R 24147081 intron Dat + chr2R 24150872 intron Dat + chr2R 24154662 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-41 447 chr2R 24177239 24177264 chr2R 24184721 24184749 412 7 7484 1.5 0.5 1.0 3.5 7510 chr2R 24177239 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184749 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-41 448 chr2R 24228398 24228426 chr2R 24228479 24228482 5 73 0.0 2.0 1.0 2.5 84 chr2R 24228398 intron CG30419 - chr2R 24228440 intron CG30419 - chr2R 24228482 intron CG30419 - chr2R_5_24225001 chr2R_24225001 RAL-41 449 chr2R 24292844 24292855 chr2R 24292914 24292932 9 75 1.0 2.0 1.5 3.6 88 chr2R 24292844 intergenic not near genes chr2R 24292888 intergenic not near genes chr2R 24292932 intergenic not near genes chr2R_9_24290001 chr2R_24290001 RAL-41 450 chr2R 24351412 24351437 chr2R 24351493 24351517 6 81 2.5 1.0 1.8 2.1 105 chr2R 24351412 intron bs + chr2R 24351464 intron bs + chr2R 24351517 intron,3` UTR bs +,CR44811 - chr2R_6_24350001 chr2R_24350001 RAL-41 451 chr2R 24383828 24383854 chr2R 24383909 24383913 11 79 2.0 3.0 2.5 3.1 85 chr2R 24383828 intron mAChR-A - chr2R 24383870 intron mAChR-A - chr2R 24383913 intron mAChR-A - chr2R_11_24380001 chr2R_24380001 RAL-41 452 chr2R 24548933 24548947 chr2R 24549017 24549028 6 83 1.0 3.0 2.0 2.0 95 chr2R 24548933 intron,intron CG4622 -,ITP + chr2R 24548980 intron,intron CG4622 -,ITP + chr2R 24549028 intron,intron CG4622 -,ITP + chr2R_6_24545001 chr2R_24545001 RAL-41 453 chr2R 24590119 24590146 chr2R 24590210 24590238 10 90 1.5 5.0 3.2 2.4 119 chr2R 24590119 intron pio + chr2R 24590178 intron pio + chr2R 24590238 intron pio + chr2R_10_24590001 chr2R_24590001 RAL-41 454 chr2R 24591520 24591539 chr2R 24591596 24591615 7 75 0.0 1.0 0.5 4.7 95 chr2R 24591520 intron pio + chr2R 24591568 intron pio + chr2R 24591615 intron pio + chr2R_7_24590001 chr2R_24590001 RAL-41 455 chr2R 24647574 24647613 chr2R 24655145 24655165 412 7 7557 0.0 1.0 0.5 4.7 7591 chr2R 24647574 intergenic not near genes chr2R 24651370 intergenic not near genes chr2R 24655165 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-41 456 chr2R 24688962 24688989 chr2R 24689042 24689043 7 75 0.5 0.5 0.5 4.7 81 chr2R 24688962 intergenic not near genes chr2R 24689002 intergenic not near genes chr2R 24689043 intergenic not near genes chr2R_7_24685001 chr2R_24685001 RAL-41 457 chr2R 24704689 24704713 chr2R 24704769 24704789 6 79 3.0 4.0 3.5 1.3 100 chr2R 24704689 intron Mid1 - chr2R 24704739 intron Mid1 - chr2R 24704789 intron Mid1 - chr2R_6_24700001 chr2R_24700001 RAL-41 458 chr2R 24727885 24727904 chr2R 24735393 24735411 mdg1 4 7508 4.5 3.5 4.0 0.8 7526 chr2R 24727885 intron Mid1 - chr2R 24731648 intron Mid1 - chr2R 24735411 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-41 459 chr2R 24737146 24737172 chr2R 24737266 24737290 8 119 3.0 2.0 2.5 2.3 144 chr2R 24737146 intergenic Mid1 - chr2R 24737218 intergenic not near genes chr2R 24737290 intergenic not near genes chr2R_8_24735001 chr2R_24735001 RAL-41 460 chr2R 24742897 24742909 chr2R 24742967 24742997 4 84 0.5 2.5 1.5 1.6 100 chr2R 24742897 intergenic not near genes chr2R 24742947 intergenic not near genes chr2R 24742997 intergenic not near genes chr2R_4_24740001 chr2R_24740001 RAL-41 461 chr2R 24763610 24763642 chr2R 24765586 24765618 G2 10 1972 2.5 4.5 3.5 2.2 2008 chr2R 24763610 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-41 462 chr2R 24859841 24859869 chr2R 24859927 24859953 8 85 3.5 1.0 2.2 2.5 112 chr2R 24859841 5` UTR CR44829 + chr2R 24859897 5` UTR CR44829 + chr2R 24859953 5` UTR CR44829 + chr2R_8_24855001 chr2R_24855001 RAL-41 463 chr2R 24884052 24884073 chr2R 24884134 24884155 4 82 1.0 0.0 0.5 2.7 103 chr2R 24884052 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884155 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-41 464 chr2R 25018345 25018374 chr2R 25018445 25018475 8 100 2.0 2.5 2.2 2.5 130 chr2R 25018345 intron uzip + chr2R 25018410 intron uzip + chr2R 25018475 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-41 465 chr2R 25022646 25022657 chr2R 25022730 25022740 4 84 0.5 0.5 0.5 2.7 94 chr2R 25022646 intron uzip + chr2R 25022693 intron uzip + chr2R 25022740 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-41 466 chr2R 25081610 25081635 chr2R 25082705 25082729 6 1095 1.0 1.5 1.2 2.7 1119 chr2R 25081610 intron gol - chr2R 25082170 intron gol - chr2R 25082729 intron gol - chr2R_6_25080001 chr2R_25080001 RAL-41 467 chr2R 25101276 25101307 chr2R 25101378 25101408 8 102 2.0 1.0 1.5 3.2 132 chr2R 25101276 intron lov - chr2R 25101342 intron lov - chr2R 25101408 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-41 468 chr2R 25131015 25131043 chr2R 25131088 25131119 4 76 0.5 0.0 0.2 3.3 104 chr2R 25131015 intron lov - chr2R 25131067 intron lov - chr2R 25131119 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-41 469 chr3L 48760 48772 chr3L 48845 48857 5 85 2.5 1.5 2.0 1.7 97 chr3L 48760 intergenic not near genes chr3L 48808 intergenic not near genes chr3L 48857 intergenic not near genes chr3L_5_45001 chr3L_45001 RAL-41 470 chr3L 68979 69009 chr3L 69066 69096 7 87 0.5 2.0 1.2 3.2 117 chr3L 68979 3` UTR Lsp1gamma + chr3L 69038 intergenic Lsp1gamma +,CR44510 + chr3L 69096 intergenic CR44510 +,Lsp1gamma + chr3L_7_65001 chr3L_65001 RAL-41 471 chr3L 110211 110242 chr3L 119378 119409 roo 5 9167 1.0 1.5 1.2 2.3 9198 chr3L 110211 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-41 472 chr3L 164792 164819 chr3L 164964 164991 10 173 15.5 15.0 15.2 0.6 199 chr3L 164792 intron p130CAS + chr3L 164892 intron p130CAS + chr3L 164991 intron p130CAS + chr3L_10_160001 chr3L_160001 RAL-41 473 chr3L 321242 321257 chr3L 321328 321350 4 91 2.0 0.5 1.2 1.8 108 chr3L 321242 3` UTR CG32344 - chr3L 321296 3` UTR CG32344 - chr3L 321350 3` UTR CG32344 - chr3L_4_320001 chr3L_320001 RAL-41 474 chr3L 402697 402717 chr3L 409750 409764 297 7 7052 1.5 4.0 2.8 1.8 7067 chr3L 402697 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409764 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-41 475 chr3L 459983 460009 chr3L 460060 460071 6 74 2.5 1.5 2.0 2.0 88 chr3L 459983 intron klar - chr3L 460027 intron klar - chr3L 460071 intron klar - chr3L_6_460001 chr3L_460001 RAL-41 476 chr3L 486689 486713 chr3L 486790 486815 4 102 4.0 2.0 3.0 1.0 126 chr3L 486689 intron klar - chr3L 486752 intron klar - chr3L 486815 intron klar - chr3L_4_485001 chr3L_485001 RAL-41 477 chr3L 535049 535078 chr3L 535131 535160 4 82 1.0 2.5 1.8 1.4 111 chr3L 535049 intron klar - chr3L 535104 intron klar - chr3L 535160 intron klar - chr3L_4_535001 chr3L_535001 RAL-41 478 chr3L 558221 558250 chr3L 558298 558327 6 77 1.5 2.0 1.8 2.1 106 chr3L 558221 intron hipk + chr3L 558274 intron hipk + chr3L 558327 intron hipk + chr3L_6_555001 chr3L_555001 RAL-41 479 chr3L 688186 688213 chr3L 688260 688289 5 75 1.5 0.5 1.0 2.5 103 chr3L 688186 intergenic CG3344 -,CG32483 - chr3L 688238 intergenic CG3344 -,CG32483 - chr3L 688289 intergenic CG32483 -,CG3344 - chr3L_5_685001 chr3L_685001 RAL-41 480 chr3L 705899 705928 chr3L 705995 706024 7 96 2.0 0.5 1.2 3.2 125 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706024 3` UTR CG13895 - chr3L_7_705001 chr3L_705001 RAL-41 481 chr3L 789917 789946 chr3L 790402 790431 roo 6 484 1.0 2.0 1.5 2.4 514 chr3L 789917 intergenic not near genes chr3L 790174 intergenic not near genes chr3L 790431 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-41 482 chr3L 858006 858029 chr3L 866485 866508 Tirant 8 8474 2.0 1.5 1.8 2.9 8502 chr3L 858006 intergenic not near genes chr3L 862257 intergenic not near genes chr3L 866508 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-41 483 chr3L 905076 905093 chr3L 905160 905177 5 84 0.0 3.5 1.8 1.8 101 chr3L 905076 intergenic not near genes chr3L 905126 intergenic not near genes chr3L 905177 intergenic not near genes chr3L_5_905001 chr3L_905001 RAL-41 484 chr3L 922172 922184 chr3L 922246 922261 7 76 3.0 3.0 3.0 1.8 89 chr3L 922172 intron Glut1 + chr3L 922216 intron Glut1 + chr3L 922261 intron Glut1 + chr3L_7_920001 chr3L_920001 RAL-41 485 chr3L 925175 925194 chr3L 932601 932620 mdg1 4 7426 1.0 1.0 1.0 2.0 7445 chr3L 925175 intron Glut1 + chr3L 928898 intron Glut1 + chr3L 932620 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-41 486 chr3L 933876 933910 chr3L 934002 934035 5 125 0.5 2.5 1.5 2.0 159 chr3L 933876 intron Glut1 + chr3L 933956 intron Glut1 + chr3L 934035 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-41 487 chr3L 1021597 1021624 chr3L 1021670 1021700 5 74 1.5 1.5 1.5 2.0 103 chr3L 1021597 intron trio - chr3L 1021648 intron trio - chr3L 1021700 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-41 488 chr3L 1021626 1021630 chr3L 1021669 1021706 5 63 0.5 1.5 1.0 2.5 80 chr3L 1021626 intron trio - chr3L 1021666 intron trio - chr3L 1021706 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-41 489 chr3L 1109634 1109658 chr3L 1109721 1109745 5 87 2.0 2.0 2.0 1.7 111 chr3L 1109634 intergenic not near genes chr3L 1109690 intergenic not near genes chr3L 1109745 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-41 490 chr3L 1219600 1219620 chr3L 1227333 1227352 412 6 7732 5.5 3.5 4.5 1.1 7752 chr3L 1219600 intron mwh + chr3L 1223476 intron mwh + chr3L 1227352 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-41 491 chr3L 1310983 1311014 chr3L 1315853 1315874 6 4864 18.5 16.0 17.2 0.3 4891 chr3L 1310983 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-41 492 chr3L 1506010 1506032 chr3L 1513606 1513627 17.6 4 7596 1.5 4.0 2.8 1.1 7617 chr3L 1506010 intron,intron Psa +,cue - chr3L 1509818 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-41 493 chr3L 1581155 1581182 chr3L 1581489 1581501 10 332 0.0 2.0 1.0 5.0 346 chr3L 1581155 intron CG13917 + chr3L 1581328 intron CG13917 + chr3L 1581501 intron CG13917 + chr3L_10_1580001 chr3L_1580001 RAL-41 494 chr3L 2308011 2308035 chr3L 2308116 2308139 5 105 1.0 1.0 1.0 2.5 128 chr3L 2308011 intergenic not near genes chr3L 2308075 intergenic not near genes chr3L 2308139 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-41 495 chr3L 2321160 2321186 chr3L 2321237 2321263 5 77 3.0 1.0 2.0 1.7 103 chr3L 2321160 intergenic not near genes chr3L 2321212 intergenic not near genes chr3L 2321263 intergenic not near genes chr3L_5_2320001 chr3L_2320001 RAL-41 496 chr3L 2534611 2534638 chr3L 2534694 2534698 5 78 0.5 3.0 1.8 1.8 87 chr3L 2534611 intron Spn - chr3L 2534654 intron Spn - chr3L 2534698 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-41 497 chr3L 2683942 2683973 chr3L 2684018 2684035 5 73 2.0 1.5 1.8 1.8 93 chr3L 2683942 intron Fife - chr3L 2683988 intron Fife - chr3L 2684035 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-41 498 chr3L 2725055 2725077 chr3L 2725130 2725154 4 76 1.0 1.0 1.0 2.0 99 chr3L 2725055 intron Mrtf - chr3L 2725104 intron Mrtf - chr3L 2725154 intron Mrtf - chr3L_4_2725001 chr3L_2725001 RAL-41 499 chr3L 2795727 2795747 chr3L 2795850 2795862 4 121 1.5 2.5 2.0 1.3 135 chr3L 2795727 intron CG43444 - chr3L 2795794 intron CG43444 - chr3L 2795862 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-41 500 chr3L 2882119 2882144 chr3L 2882194 2882220 5 76 1.0 0.0 0.5 3.3 101 chr3L 2882119 intergenic not near genes chr3L 2882170 intergenic not near genes chr3L 2882220 intergenic not near genes chr3L_5_2880001 chr3L_2880001 RAL-41 501 chr3L 3281440 3281474 chr3L 3281936 3281970 Doc 6 496 3.0 3.0 3.0 1.5 530 chr3L 3281440 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-41 502 chr3L 3475085 3475095 chr3L 3475528 3475537 jockey 4 443 2.5 4.0 3.2 1.0 452 chr3L 3475085 intron CG42324 + chr3L 3475311 intron CG42324 + chr3L 3475537 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-41 503 chr3L 3601302 3601328 chr3L 3606613 3606639 copia 5 5311 1.0 3.5 2.2 1.6 5337 chr3L 3601302 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-41 504 chr3L 3642156 3642188 chr3L 3642262 3642294 10 106 1.5 1.5 1.5 4.0 138 chr3L 3642156 intron dar1 + chr3L 3642225 intron dar1 + chr3L 3642294 intron dar1 + chr3L_10_3640001 chr3L_3640001 RAL-41 505 chr3L 3795599 3795622 chr3L 3795675 3795697 4 76 2.5 2.5 2.5 1.1 98 chr3L 3795599 intron CG32264 - chr3L 3795648 intron CG32264 - chr3L 3795697 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-41 506 chr3L 3801951 3801975 chr3L 3802116 3802140 4 165 1.0 1.0 1.0 2.0 189 chr3L 3801951 intron CG32264 - chr3L 3802046 intron CG32264 - chr3L 3802140 intron CG32264 - chr3L_4_3800001 chr3L_3800001 RAL-41 507 chr3L 3833745 3833766 chr3L 3833986 3834007 pogo 4 240 2.0 1.0 1.5 1.6 262 chr3L 3833745 intron enc + chr3L 3833876 intron enc + chr3L 3834007 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-41 508 chr3L 4098386 4098417 chr3L 4098590 4098621 7 203 1.0 2.0 1.5 2.8 235 chr3L 4098386 intron CG14995 - chr3L 4098504 intron CG14995 - chr3L 4098621 intron CG14995 - chr3L_7_4095001 chr3L_4095001 RAL-41 509 chr3L 4441833 4441864 chr3L 4441912 4441938 6 72 2.5 3.0 2.8 1.6 105 chr3L 4441833 intergenic not near genes chr3L 4441886 intergenic not near genes chr3L 4441938 intergenic not near genes chr3L_6_4440001 chr3L_4440001 RAL-41 510 chr3L 4484729 4484748 chr3L 4484807 4484826 6 78 1.5 1.5 1.5 2.4 97 chr3L 4484729 intergenic CG11350 +,CG13722 - chr3L 4484778 intergenic CG13722 -,CG11350 + chr3L 4484826 intergenic CG13722 -,CG11350 + chr3L_6_4480001 chr3L_4480001 RAL-41 511 chr3L 4519421 4519448 chr3L 4519498 4519523 6 76 1.0 1.5 1.2 2.7 102 chr3L 4519421 intron Tie - chr3L 4519472 intron Tie - chr3L 4519523 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-41 512 chr3L 4797968 4797990 chr3L 4798048 4798067 10 80 0.5 3.0 1.8 3.6 99 chr3L 4797968 intergenic not near genes chr3L 4798018 intergenic not near genes chr3L 4798067 intergenic not near genes chr3L_10_4795001 chr3L_4795001 RAL-41 513 chr3L 4858307 4858318 chr3L 4858397 4858408 4 88 5.0 3.0 4.0 0.8 101 chr3L 4858307 intergenic not near genes chr3L 4858358 intergenic not near genes chr3L 4858408 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-41 514 chr3L 4858321 4858326 chr3L 4858395 4858416 4 80 3.5 3.0 3.2 1.0 95 chr3L 4858321 intergenic not near genes chr3L 4858368 intergenic not near genes chr3L 4858416 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-41 515 chr3L 4990743 4990769 chr3L 4990857 4990881 10 112 1.5 1.5 1.5 4.0 138 chr3L 4990743 intron Con - chr3L 4990812 intron Con - chr3L 4990881 intron Con - chr3L_10_4990001 chr3L_4990001 RAL-41 516 chr3L 5045464 5045484 chr3L 5050242 5050265 Doc 4 4780 1.5 1.5 1.5 1.6 4801 chr3L 5045464 intron Con - chr3L 5047864 intron Con - chr3L 5050265 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-41 517 chr3L 5063843 5063859 chr3L 5063960 5063976 4 117 0.0 1.5 0.8 2.2 133 chr3L 5063843 intron Con - chr3L 5063910 intron Con - chr3L 5063976 intron Con - chr3L_4_5060001 chr3L_5060001 RAL-41 518 chr3L 5104482 5104511 chr3L 5124616 5124640 5 20133 1.5 0.0 0.8 2.8 20158 chr3L 5104482 intergenic not near genes chr3L 5114561 intergenic not near genes chr3L 5124640 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-41 519 chr3L 5310361 5310382 chr3L 5310487 5310507 11 125 1.0 3.0 2.0 3.7 146 chr3L 5310361 intergenic not near genes chr3L 5310434 intergenic not near genes chr3L 5310507 intergenic not near genes chr3L_11_5310001 chr3L_5310001 RAL-41 520 chr3L 5384323 5384328 chr3L 5384392 5384408 5 76 4.0 5.0 4.5 0.9 85 chr3L 5384323 intergenic not near genes chr3L 5384366 intergenic not near genes chr3L 5384408 intergenic not near genes chr3L_5_5380001 chr3L_5380001 RAL-41 521 chr3L 5910031 5910059 chr3L 5910272 5910300 pogo 5 241 0.5 3.5 2.0 1.7 269 chr3L 5910031 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910300 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-41 522 chr3L 5926329 5926340 chr3L 5926514 5926530 BS 5 189 2.0 2.5 2.2 1.6 201 chr3L 5926329 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926530 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-41 523 chr3L 5936950 5936971 chr3L 5937053 5937074 6 103 1.0 2.5 1.8 2.1 124 chr3L 5936950 intron CG33993 - chr3L 5937012 intron CG33993 - chr3L 5937074 intron CG33993 - chr3L_6_5935001 chr3L_5935001 RAL-41 524 chr3L 5957575 5957596 chr3L 5957650 5957673 4 76 2.0 2.0 2.0 1.3 98 chr3L 5957575 intergenic not near genes chr3L 5957624 intergenic not near genes chr3L 5957673 intergenic not near genes chr3L_4_5955001 chr3L_5955001 RAL-41 525 chr3L 6001679 6001714 chr3L 6004379 6004414 jockey 9 2700 0.5 1.0 0.8 5.0 2735 chr3L 6001679 intron PVRAP + chr3L 6003046 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_9_6000001 chr3L_6000001 RAL-41 526 chr3L 6022240 6022268 chr3L 6022324 6022348 8 83 3.5 2.0 2.8 2.1 108 chr3L 6022240 intron PVRAP + chr3L 6022294 intron PVRAP + chr3L 6022348 intron PVRAP + chr3L_8_6020001 chr3L_6020001 RAL-41 527 chr3L 6052652 6052669 chr3L 6052727 6052754 9 84 5.5 5.0 5.2 1.5 102 chr3L 6052652 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052754 exon Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-41 528 chr3L 6220914 6220947 chr3L 6230066 6230097 roo 7 9151 0.5 2.0 1.2 3.2 9183 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-41 529 chr3L 6335017 6335040 chr3L 6335487 6335494 297 6 467 0.0 2.0 1.0 3.0 477 chr3L 6335017 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335494 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-41 530 chr3L 6405666 6405690 chr3L 6432130 6432153 roo 4 26464 1.5 0.5 1.0 2.0 26487 chr3L 6405666 intron CG42747 + chr3L 6418910 intron CG42747 + chr3L 6432153 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-41 531 chr3L 6868721 6868741 chr3L 6868799 6868819 9 78 0.5 0.5 0.5 6.0 98 chr3L 6868721 intergenic not near genes chr3L 6868770 intergenic not near genes chr3L 6868819 intergenic not near genes chr3L_9_6865001 chr3L_6865001 RAL-41 532 chr3L 6887521 6887550 chr3L 6895013 6895042 roo 6 7492 2.0 2.0 2.0 2.0 7521 chr3L 6887521 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-41 533 chr3L 7068705 7068745 chr3L 7068802 7068842 7 96 0.5 2.5 1.5 2.8 137 chr3L 7068705 intron,exon CG8641 -,CG32391 - chr3L 7068774 intron,exon CG8641 -,CG32391 - chr3L 7068842 intron,intron CG8641 -,CG32391 - chr3L_7_7065001 chr3L_7065001 RAL-41 534 chr3L 7090028 7090059 chr3L 7090105 7090139 4 80 1.0 0.0 0.5 2.7 111 chr3L 7090028 intergenic not near genes chr3L 7090084 intergenic not near genes chr3L 7090139 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-41 535 chr3L 7198632 7198650 chr3L 7198733 7198751 6 100 1.0 1.5 1.2 2.7 119 chr3L 7198632 intergenic not near genes chr3L 7198692 intergenic not near genes chr3L 7198751 intergenic not near genes chr3L_6_7195001 chr3L_7195001 RAL-41 536 chr3L 7218095 7218114 chr3L 7218173 7218191 7 77 2.0 4.5 3.2 1.7 96 chr3L 7218095 intergenic not near genes chr3L 7218143 intergenic not near genes chr3L 7218191 intergenic not near genes chr3L_7_7215001 chr3L_7215001 RAL-41 537 chr3L 7244948 7244965 chr3L 7245040 7245057 6 91 1.5 2.5 2.0 2.0 109 chr3L 7244948 exon mei-P22 + chr3L 7245002 exon mei-P22 + chr3L 7245057 exon mei-P22 + chr3L_6_7245001 chr3L_7245001 RAL-41 538 chr3L 7264791 7264916 chr3L 7264883 7264998 7 88 0.0 0.0 0.0 7.0 207 chr3L 7264791 intergenic not near genes chr3L 7264894 intergenic not near genes chr3L 7264998 intergenic not near genes chr3L_7_7260001 chr3L_7260001 RAL-41 539 chr3L 7276157 7276177 chr3L 7276239 7276259 4 82 2.0 4.0 3.0 1.0 102 chr3L 7276157 intron unc-13-4A - chr3L 7276208 intron unc-13-4A - chr3L 7276259 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-41 540 chr3L 7277113 7277139 chr3L 7277214 7277241 4 102 2.0 2.0 2.0 1.3 128 chr3L 7277113 exon unc-13-4A - chr3L 7277177 intron unc-13-4A - chr3L 7277241 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-41 541 chr3L 7285457 7285471 chr3L 7285535 7285549 5 78 0.5 0.0 0.2 4.2 92 chr3L 7285457 intron unc-13-4A - chr3L 7285503 intron unc-13-4A - chr3L 7285549 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-41 542 chr3L 7303887 7303899 chr3L 7303962 7303985 4 84 3.0 1.5 2.2 1.2 98 chr3L 7303887 intron unc-13-4A - chr3L 7303936 intron unc-13-4A - chr3L 7303985 intron unc-13-4A - chr3L_4_7300001 chr3L_7300001 RAL-41 543 chr3L 7376669 7376692 chr3L 7376756 7376770 6 85 0.0 1.5 0.8 3.3 101 chr3L 7376669 intron SMSr - chr3L 7376720 intron SMSr - chr3L 7376770 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-41 544 chr3L 7464869 7464892 chr3L 7464946 7464968 4 76 1.5 2.0 1.8 1.4 99 chr3L 7464869 intergenic not near genes chr3L 7464918 intergenic not near genes chr3L 7464968 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-41 545 chr3L 7480053 7480056 chr3L 7480142 7480145 4 89 3.0 0.0 1.5 1.6 92 chr3L 7480053 intergenic not near genes chr3L 7480099 intergenic not near genes chr3L 7480145 intergenic not near genes chr3L_4_7480001 chr3L_7480001 RAL-41 546 chr3L 7691839 7691867 chr3L 7691931 7691957 5 91 0.0 1.5 0.8 2.8 118 chr3L 7691839 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691898 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691957 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_5_7690001 chr3L_7690001 RAL-41 547 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 6.0 3.5 4.8 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-41 548 chr3L 7982976 7982991 chr3L 7983057 7983079 7 84 0.0 3.0 1.5 2.8 103 chr3L 7982976 intron nmo + chr3L 7983028 intron nmo + chr3L 7983079 intron nmo + chr3L_7_7980001 chr3L_7980001 RAL-41 549 chr3L 8019731 8019736 chr3L 8024116 8024148 NOF 4 4406 0.0 0.0 0.0 4.0 4417 chr3L 8019731 intron nmo + chr3L 8021940 intron nmo + chr3L 8024148 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-41 550 chr3L 8164872 8164901 chr3L 8165063 8165092 4 191 0.5 0.5 0.5 2.7 220 chr3L 8164872 intron CG13675 - chr3L 8164982 intron CG13675 - chr3L 8165092 intron CG13675 - chr3L_4_8160001 chr3L_8160001 RAL-41 551 chr3L 8203547 8203567 chr3L 8203622 8203626 6 69 1.5 2.0 1.8 2.1 79 chr3L 8203547 intergenic CG13679 + chr3L 8203586 intergenic CG13679 + chr3L 8203626 intergenic CG13679 + chr3L_6_8200001 chr3L_8200001 RAL-41 552 chr3L 8226445 8226477 chr3L 8226662 8226693 6 217 1.5 1.0 1.2 2.7 248 chr3L 8226445 intergenic not near genes chr3L 8226569 intergenic not near genes chr3L 8226693 intergenic not near genes chr3L_6_8225001 chr3L_8225001 RAL-41 553 chr3L 8395832 8395856 chr3L 8395928 8395935 4 91 1.0 1.5 1.2 1.8 103 chr3L 8395832 intergenic CG7120 + chr3L 8395884 intergenic CG7120 + chr3L 8395935 intergenic CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-41 554 chr3L 8619510 8619545 chr3L 8619599 8619634 4 89 0.5 0.5 0.5 2.7 124 chr3L 8619510 intergenic S-Lap1 +,S-Lap2 + chr3L 8619572 intergenic S-Lap1 +,S-Lap2 + chr3L 8619634 intergenic S-Lap1 +,S-Lap2 + chr3L_4_8615001 chr3L_8615001 RAL-41 555 chr3L 8629495 8629521 chr3L 8629601 8629627 5 106 1.0 1.0 1.0 2.5 132 chr3L 8629495 intron Zasp66 + chr3L 8629561 intron Zasp66 + chr3L 8629627 intron Zasp66 + chr3L_5_8625001 chr3L_8625001 RAL-41 556 chr3L 8791275 8791295 chr3L 8796693 8796712 I-element 6 5419 4.5 0.0 2.2 1.9 5437 chr3L 8791275 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796712 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-41 557 chr3L 8800922 8800936 chr3L 8801065 8801081 4 144 1.5 1.5 1.5 1.6 159 chr3L 8800922 intergenic CG13310 - chr3L 8801002 intergenic CG13310 - chr3L 8801081 intergenic CG13311 - chr3L_4_8800001 chr3L_8800001 RAL-41 558 chr3L 8824569 8824597 chr3L 8824657 8824685 7 84 4.5 3.5 4.0 1.4 116 chr3L 8824569 intergenic not near genes chr3L 8824627 intergenic not near genes chr3L 8824685 intergenic not near genes chr3L_7_8820001 chr3L_8820001 RAL-41 559 chr3L 8831788 8831816 chr3L 8831869 8831897 4 80 2.5 0.0 1.2 1.8 109 chr3L 8831788 intron dally + chr3L 8831842 intron dally + chr3L 8831897 intron dally + chr3L_4_8830001 chr3L_8830001 RAL-41 560 chr3L 9076928 9076950 chr3L 9084488 9084509 412 5 7559 3.0 2.0 2.5 1.4 7581 chr3L 9076928 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084509 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-41 561 chr3L 9219242 9219274 chr3L 9219914 9219926 jockey 7 668 3.0 2.5 2.8 1.8 684 chr3L 9219242 intergenic not near genes chr3L 9219584 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-41 562 chr3L 9270629 9270648 chr3L 9278380 9278397 roo 4 7750 4.0 3.5 3.8 0.8 7768 chr3L 9270629 intron GluRIB + chr3L 9274513 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-41 563 chr3L 9348478 9348705 chr3L 9348973 9349065 5 444 0.0 0.0 0.0 5.0 587 chr3L 9348478 intergenic PGRP-LC + chr3L 9348772 intergenic PGRP-LC + chr3L 9349065 intergenic not near genes chr3L_5_9345001 chr3L_9345001 RAL-41 564 chr3L 9571913 9571937 chr3L 9572261 9572285 jockey 4 348 0.0 4.0 2.0 1.3 372 chr3L 9571913 intron CG42673 + chr3L 9572099 intron CG42673 + chr3L 9572285 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-41 565 chr3L 9575906 9575945 chr3L 9580984 9580999 jockey 10 5074 3.5 2.5 3.0 2.5 5093 chr3L 9575906 intron CG42673 + chr3L 9578452 intron CG42673 + chr3L 9580999 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-41 566 chr3L 9637857 9637885 chr3L 9637939 9637967 6 82 0.0 1.5 0.8 3.3 110 chr3L 9637857 intron fry - chr3L 9637912 intron fry - chr3L 9637967 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-41 567 chr3L 9646807 9646828 chr3L 9646905 9646926 8 98 1.5 1.5 1.5 3.2 119 chr3L 9646807 intron,intron fry -,CG33696 + chr3L 9646866 intron,intron fry -,CG33696 + chr3L 9646926 intron,intron fry -,CG33696 + chr3L_8_9645001 chr3L_9645001 RAL-41 568 chr3L 9676181 9676208 chr3L 9676271 9676298 5 90 1.0 0.0 0.5 3.3 117 chr3L 9676181 intron fry - chr3L 9676240 intron fry - chr3L 9676298 intron fry - chr3L_5_9675001 chr3L_9675001 RAL-41 569 chr3L 9871190 9871223 chr3L 9871286 9871319 4 96 1.0 2.0 1.5 1.6 129 chr3L 9871190 intergenic not near genes chr3L 9871254 intergenic not near genes chr3L 9871319 intergenic not near genes chr3L_4_9870001 chr3L_9870001 RAL-41 570 chr3L 9951194 9951224 chr3L 9951281 9951311 4 87 1.5 3.0 2.2 1.2 117 chr3L 9951194 intron CG34356 + chr3L 9951252 intron CG34356 + chr3L 9951311 intron CG34356 + chr3L_4_9950001 chr3L_9950001 RAL-41 571 chr3L 10004086 10004100 chr3L 10004165 10004180 5 80 2.5 1.0 1.8 1.8 94 chr3L 10004086 exon dpr6 + chr3L 10004133 intron dpr6 + chr3L 10004180 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-41 572 chr3L 10049541 10049560 chr3L 10049621 10049639 5 80 3.0 3.0 3.0 1.2 98 chr3L 10049541 intron dpr6 + chr3L 10049590 intron dpr6 + chr3L 10049639 intron dpr6 + chr3L_5_10045001 chr3L_10045001 RAL-41 573 chr3L 10214733 10214830 chr3L 10214818 10214932 7 95 0.0 0.0 0.0 7.0 199 chr3L 10214733 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-41 574 chr3L 10308740 10308767 chr3L 10308816 10308844 7 77 3.0 0.0 1.5 2.8 104 chr3L 10308740 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308844 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-41 575 chr3L 10414947 10414977 chr3L 10417318 10417349 Doc 10 2368 0.0 1.5 0.8 5.6 2402 chr3L 10414947 intergenic CG12362 + chr3L 10416148 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-41 576 chr3L 10417572 10417596 chr3L 10417649 10417672 7 75 2.5 3.0 2.8 1.8 100 chr3L 10417572 intergenic not near genes chr3L 10417622 intergenic not near genes chr3L 10417672 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-41 577 chr3L 10532746 10532764 chr3L 10532823 10532843 6 78 1.0 0.0 0.5 4.0 97 chr3L 10532746 intron A2bp1 + chr3L 10532794 intron A2bp1 + chr3L 10532843 intron A2bp1 + chr3L_6_10530001 chr3L_10530001 RAL-41 578 chr3L 10614263 10614297 chr3L 10614364 10614397 7 96 1.5 1.5 1.5 2.8 134 chr3L 10614263 intergenic not near genes chr3L 10614330 intergenic not near genes chr3L 10614397 intergenic not near genes chr3L_7_10610001 chr3L_10610001 RAL-41 579 chr3L 10658079 10658212 chr3L 10658156 10658338 8 102 1.0 1.0 1.0 4.0 259 chr3L 10658079 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-41 580 chr3L 10904393 10904400 chr3L 10904526 10904543 5 142 1.0 2.5 1.8 1.8 150 chr3L 10904393 intergenic not near genes chr3L 10904468 intergenic not near genes chr3L 10904543 intergenic not near genes chr3L_5_10900001 chr3L_10900001 RAL-41 581 chr3L 11087060 11087082 chr3L 11088849 11088866 S-element 7 1788 2.5 1.0 1.8 2.5 1806 chr3L 11087060 intron JIL-1 - chr3L 11087963 intron JIL-1 - chr3L 11088866 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-41 582 chr3L 11135532 11135799 chr3L 11135762 11135884 6 109 0.0 0.0 0.0 6.0 352 chr3L 11135532 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135884 intergenic CG32082 +,CG14143 + chr3L_6_11135001 chr3L_11135001 RAL-41 583 chr3L 11147157 11147181 chr3L 11147376 11147400 9 217 2.5 0.0 1.2 4.1 243 chr3L 11147157 intron CG32082 + chr3L 11147278 intron CG32082 + chr3L 11147400 intron CG32082 + chr3L_9_11145001 chr3L_11145001 RAL-41 584 chr3L 11245101 11245118 chr3L 11245182 11245210 6 90 1.0 2.5 1.8 2.1 109 chr3L 11245101 intergenic not near genes chr3L 11245156 intergenic not near genes chr3L 11245210 intergenic not near genes chr3L_6_11245001 chr3L_11245001 RAL-41 585 chr3L 11400135 11400151 chr3L 11400217 11400232 8 81 2.5 1.0 1.8 2.9 97 chr3L 11400135 intergenic not near genes chr3L 11400184 intergenic not near genes chr3L 11400232 intergenic not near genes chr3L_8_11400001 chr3L_11400001 RAL-41 586 chr3L 11435560 11435590 chr3L 11435729 11435759 14 169 2.5 1.5 2.0 4.7 199 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435759 5` UTR CR44548 + chr3L_14_11435001 chr3L_11435001 RAL-41 587 chr3L 11678107 11678121 chr3L 11678194 11678208 4 87 3.5 2.0 2.8 1.1 101 chr3L 11678107 intron CG32085 - chr3L 11678158 intron CG32085 - chr3L 11678208 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-41 588 chr3L 11723086 11723116 chr3L 11727881 11727911 Doc 5 4795 3.0 1.5 2.2 1.6 4825 chr3L 11723086 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-41 589 chr3L 11729681 11729699 chr3L 11729757 11729774 6 76 1.0 2.0 1.5 2.4 93 chr3L 11729681 exon CG32088 + chr3L 11729728 intron CG32088 + chr3L 11729774 intron CG32088 + chr3L_6_11725001 chr3L_11725001 RAL-41 590 chr3L 11849335 11849349 chr3L 11849434 11849449 4 100 1.5 2.5 2.0 1.3 114 chr3L 11849335 intergenic not near genes chr3L 11849392 intergenic not near genes chr3L 11849449 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-41 591 chr3L 11940677 11940713 chr3L 11940771 11940807 5 94 4.0 1.0 2.5 1.4 130 chr3L 11940677 intergenic not near genes chr3L 11940742 intergenic not near genes chr3L 11940807 intergenic not near genes chr3L_5_11940001 chr3L_11940001 RAL-41 592 chr3L 12078233 12078255 chr3L 12078407 12078427 5 180 2.0 1.5 1.8 1.8 194 chr3L 12078233 intron Sema-5c - chr3L 12078330 intron Sema-5c - chr3L 12078427 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-41 593 chr3L 12156432 12156460 chr3L 12160317 12160346 6 3887 9.5 12.0 10.8 0.5 3914 chr3L 12156432 3` UTR Nrx-IV + chr3L 12158389 intron CG9760 - chr3L 12160346 intron CG9760 - chr3L_6_12155001 chr3L_12155001 RAL-41 594 chr3L 12326745 12326773 chr3L 12326821 12326848 5 76 3.0 1.0 2.0 1.7 103 chr3L 12326745 intergenic not near genes chr3L 12326796 intergenic not near genes chr3L 12326848 intergenic not near genes chr3L_5_12325001 chr3L_12325001 RAL-41 595 chr3L 12335387 12335409 chr3L 12335465 12335471 4 72 2.0 3.0 2.5 1.1 84 chr3L 12335387 exon CG32105 + chr3L 12335429 3` UTR CG32105 + chr3L 12335471 3` UTR CG32105 + chr3L_4_12335001 chr3L_12335001 RAL-41 596 chr3L 12501669 12501693 chr3L 12501756 12501780 5 87 0.0 2.0 1.0 2.5 111 chr3L 12501669 5` UTR CG10681 + chr3L 12501724 intron CG10681 + chr3L 12501780 5` UTR CG10681 + chr3L_5_12500001 chr3L_12500001 RAL-41 597 chr3L 12874949 12874954 chr3L 12877240 12877246 jockey 4 2292 2.0 0.5 1.2 1.8 2297 chr3L 12874949 intergenic not near genes chr3L 12876098 intergenic not near genes chr3L 12877246 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-41 598 chr3L 12955130 12955155 chr3L 12955204 12955231 5 75 2.5 1.5 2.0 1.7 101 chr3L 12955130 intergenic CG10752 - chr3L 12955180 intergenic not near genes chr3L 12955231 intergenic not near genes chr3L_5_12955001 chr3L_12955001 RAL-41 599 chr3L 12957793 12957817 chr3L 12962267 12962299 copia 5 4480 0.5 3.0 1.8 1.8 4506 chr3L 12957793 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-41 600 chr3L 13205242 13205267 chr3L 13205325 13205353 4 85 1.5 1.0 1.2 1.8 111 chr3L 13205242 intergenic not near genes chr3L 13205298 intergenic not near genes chr3L 13205353 intergenic not near genes chr3L_4_13205001 chr3L_13205001 RAL-41 601 chr3L 13213737 13213757 chr3L 13213814 13213834 5 75 3.0 2.5 2.8 1.3 97 chr3L 13213737 intergenic not near genes chr3L 13213786 intergenic not near genes chr3L 13213834 intergenic not near genes chr3L_5_13210001 chr3L_13210001 RAL-41 602 chr3L 13261822 13261837 chr3L 13261912 13261927 6 90 1.5 1.5 1.5 2.4 105 chr3L 13261822 intron caps + chr3L 13261874 intron caps + chr3L 13261927 intron caps + chr3L_6_13260001 chr3L_13260001 RAL-41 603 chr3L 13338282 13338314 chr3L 13338378 13338410 8 95 2.5 0.0 1.2 3.6 128 chr3L 13338282 intergenic not near genes chr3L 13338346 intergenic not near genes chr3L 13338410 intergenic not near genes chr3L_8_13335001 chr3L_13335001 RAL-41 604 chr3L 13361775 13361799 chr3L 13361859 13361883 9 85 3.0 3.5 3.2 2.1 108 chr3L 13361775 intergenic not near genes chr3L 13361829 intergenic not near genes chr3L 13361883 intergenic not near genes chr3L_9_13360001 chr3L_13360001 RAL-41 605 chr3L 13458114 13458147 chr3L 13458200 13458233 12 84 2.5 3.5 3.0 3.0 119 chr3L 13458114 intron CG10738 + chr3L 13458174 intron CG10738 + chr3L 13458233 intron CG10738 + chr3L_12_13455001 chr3L_13455001 RAL-41 606 chr3L 13677537 13677747 chr3L 13677614 13677903 6 103 0.0 2.0 1.0 3.0 366 chr3L 13677537 intron bru-3 - chr3L 13677720 intron bru-3 - chr3L 13677903 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-41 607 chr3L 13901575 13901600 chr3L 13901651 13901677 5 77 1.5 2.0 1.8 1.8 102 chr3L 13901575 intron dysc - chr3L 13901626 intron dysc - chr3L 13901677 intron dysc - chr3L_5_13900001 chr3L_13900001 RAL-41 608 chr3L 14036678 14036693 chr3L 14036771 14036785 8 93 2.5 4.5 3.5 1.8 107 chr3L 14036678 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036732 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036785 3` UTR pncr014:3L - chr3L_8_14035001 chr3L_14035001 RAL-41 609 chr3L 14055378 14055397 chr3L 14055697 14055716 4 319 3.5 1.0 2.2 1.2 338 chr3L 14055378 intron CG32138 + chr3L 14055547 intron CG32138 + chr3L 14055716 intron CG32138 + chr3L_4_14055001 chr3L_14055001 RAL-41 610 chr3L 14063064 14063087 chr3L 14063334 14063357 4 270 0.0 1.5 0.8 2.2 293 chr3L 14063064 intron CG32138 + chr3L 14063210 intron CG32138 + chr3L 14063357 intron CG32138 + chr3L_4_14060001 chr3L_14060001 RAL-41 611 chr3L 14235876 14235893 chr3L 14235961 14235979 4 85 0.5 1.0 0.8 2.2 103 chr3L 14235876 5` UTR CG34244 - chr3L 14235928 5` UTR CG34244 - chr3L 14235979 intergenic CG34244 - chr3L_4_14235001 chr3L_14235001 RAL-41 612 chr3L 14245572 14245580 chr3L 14245666 14245674 1360 4 94 1.5 1.0 1.2 1.8 102 chr3L 14245572 3` UTR CR44561 - chr3L 14245623 3` UTR CR44561 - chr3L 14245674 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-41 613 chr3L 14302945 14302958 chr3L 14303019 14303043 4 83 1.5 0.5 1.0 2.0 98 chr3L 14302945 intron fz + chr3L 14302994 intron fz + chr3L 14303043 intron fz + chr3L_4_14300001 chr3L_14300001 RAL-41 614 chr3L 14312029 14312054 chr3L 14316838 14316862 X-element 8 4811 1.5 1.5 1.5 3.2 4833 chr3L 14312029 exon fz + chr3L 14314446 intron fz + chr3L 14316862 intron fz + chr3L_8_14310001 chr3L_14310001 RAL-41 615 chr3L 14326985 14326994 chr3L 14327121 14327130 5 136 0.5 2.5 1.5 2.0 145 chr3L 14326985 intron fz + chr3L 14327058 intron fz + chr3L 14327130 intron fz + chr3L_5_14325001 chr3L_14325001 RAL-41 616 chr3L 14394255 14394274 chr3L 14394354 14394373 5 99 0.5 0.5 0.5 3.3 118 chr3L 14394255 intergenic not near genes chr3L 14394314 intergenic not near genes chr3L 14394373 intergenic not near genes chr3L_5_14390001 chr3L_14390001 RAL-41 617 chr3L 14468448 14468473 chr3L 14473654 14473678 copia 4 5206 0.5 1.0 0.8 2.2 5230 chr3L 14468448 intron bbg - chr3L 14471063 intron bbg - chr3L 14473678 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-41 618 chr3L 14665025 14665054 chr3L 14665150 14665179 10 125 2.0 0.5 1.2 4.5 154 chr3L 14665025 exon dlp + chr3L 14665102 intron dlp + chr3L 14665179 intron dlp + chr3L_10_14665001 chr3L_14665001 RAL-41 619 chr3L 14693555 14693574 chr3L 14693653 14693673 5 96 0.5 1.0 0.8 2.8 118 chr3L 14693555 intron ome + chr3L 14693614 intron ome + chr3L 14693673 intron ome + chr3L_5_14690001 chr3L_14690001 RAL-41 620 chr3L 14721185 14721208 chr3L 14723025 14723050 Rt1c 4 1842 2.0 2.5 2.2 1.2 1865 chr3L 14721185 intron ome + chr3L 14722118 intron ome + chr3L 14723050 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-41 621 chr3L 14725200 14725229 chr3L 14725505 14725534 6 304 2.0 0.0 1.0 3.0 334 chr3L 14725200 intron ome + chr3L 14725367 intron ome + chr3L 14725534 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-41 622 chr3L 14731225 14731247 chr3L 14731415 14731435 4 189 0.5 1.5 1.0 2.0 210 chr3L 14731225 intron ome + chr3L 14731330 intron ome + chr3L 14731435 intron ome + chr3L_4_14730001 chr3L_14730001 RAL-41 623 chr3L 14741141 14741168 chr3L 14741219 14741246 5 77 0.0 1.0 0.5 3.3 105 chr3L 14741141 intron ome + chr3L 14741194 intron ome + chr3L 14741246 intron ome + chr3L_5_14740001 chr3L_14740001 RAL-41 624 chr3L 14870048 14870078 chr3L 14870124 14870154 5 76 0.5 0.5 0.5 3.3 106 chr3L 14870048 intron CG17839 + chr3L 14870101 intron CG17839 + chr3L 14870154 intron CG17839 + chr3L_5_14870001 chr3L_14870001 RAL-41 625 chr3L 14893656 14893684 chr3L 14893741 14893768 10 84 1.5 1.0 1.2 4.5 112 chr3L 14893656 intergenic CG34245 - chr3L 14893712 intergenic CG34245 - chr3L 14893768 3` UTR CG34245 - chr3L_10_14890001 chr3L_14890001 RAL-41 626 chr3L 14961878 14961911 chr3L 14962228 14962260 7 350 1.5 0.5 1.0 3.5 382 chr3L 14961878 intergenic not near genes chr3L 14962069 intergenic not near genes chr3L 14962260 intergenic not near genes chr3L_7_14960001 chr3L_14960001 RAL-41 627 chr3L 15393664 15393693 chr3L 15393866 15393894 5 202 0.5 1.5 1.0 2.5 230 chr3L 15393664 intergenic not near genes chr3L 15393779 intergenic not near genes chr3L 15393894 intergenic not near genes chr3L_5_15390001 chr3L_15390001 RAL-41 628 chr3L 15423760 15423780 chr3L 15426604 15426623 opus 6 2844 1.5 1.0 1.2 2.7 2863 chr3L 15423760 intergenic not near genes chr3L 15425192 intergenic not near genes chr3L 15426623 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-41 629 chr3L 15443589 15443615 chr3L 15443665 15443690 6 76 0.5 0.5 0.5 4.0 101 chr3L 15443589 intergenic not near genes chr3L 15443640 intergenic not near genes chr3L 15443690 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-41 630 chr3L 15466037 15466122 chr3L 15466119 15466218 8 85 0.0 0.0 0.0 8.0 181 chr3L 15466037 intergenic not near genes chr3L 15466128 intergenic not near genes chr3L 15466218 intergenic not near genes chr3L_8_15465001 chr3L_15465001 RAL-41 631 chr3L 15511303 15511319 chr3L 15511383 15511399 5 80 0.5 0.0 0.2 4.2 96 chr3L 15511303 intron Eip71CD + chr3L 15511351 intron Eip71CD + chr3L 15511399 intron Eip71CD + chr3L_5_15510001 chr3L_15510001 RAL-41 632 chr3L 15541621 15541635 chr3L 15541712 15541726 4 91 2.5 0.5 1.5 1.6 105 chr3L 15541621 intron CrebA + chr3L 15541674 intron CrebA + chr3L 15541726 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-41 633 chr3L 15554924 15554947 chr3L 15556711 15556734 S-element 6 1787 0.5 3.5 2.0 2.0 1810 chr3L 15554924 intron AGO2 + chr3L 15555829 intron AGO2 + chr3L 15556734 intron AGO2 + chr3L_6_15555001 chr3L_15555001 RAL-41 634 chr3L 15615929 15615959 chr3L 15616025 15616055 5 96 1.5 3.5 2.5 1.4 126 chr3L 15615929 intron comm3 - chr3L 15615992 intron comm3 - chr3L 15616055 intron comm3 - chr3L_5_15615001 chr3L_15615001 RAL-41 635 chr3L 15641784 15641811 chr3L 15641869 15641896 4 85 0.0 0.5 0.2 3.3 112 chr3L 15641784 intron comm3 - chr3L 15641840 intron comm3 - chr3L 15641896 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-41 636 chr3L 15880598 15880624 chr3L 15880676 15880703 5 78 1.0 2.5 1.8 1.8 105 chr3L 15880598 intron pHCl - chr3L 15880650 intron pHCl - chr3L 15880703 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-41 637 chr3L 15883194 15883207 chr3L 15883487 15883500 5 293 2.5 0.5 1.5 2.0 306 chr3L 15883194 intron pHCl - chr3L 15883347 intron pHCl - chr3L 15883500 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-41 638 chr3L 15929197 15929228 chr3L 15938344 15938375 roo 6 9147 2.0 0.5 1.2 2.7 9178 chr3L 15929197 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938375 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 RAL-41 639 chr3L 15944593 15944610 chr3L 15944669 15944685 4 76 2.5 2.5 2.5 1.1 92 chr3L 15944593 intron Pka-C3 - chr3L 15944639 intron Pka-C3 - chr3L 15944685 intron Pka-C3 - chr3L_4_15940001 chr3L_15940001 RAL-41 640 chr3L 16158805 16158832 chr3L 16158890 16158917 9 85 0.0 1.5 0.8 5.0 112 chr3L 16158805 intron CG5151 - chr3L 16158861 intron CG5151 - chr3L 16158917 intron CG5151 - chr3L_9_16155001 chr3L_16155001 RAL-41 641 chr3L 16182060 16182095 chr3L 16182180 16182215 9 120 0.0 0.0 0.0 9.0 155 chr3L 16182060 intergenic not near genes chr3L 16182138 intergenic not near genes chr3L 16182215 intergenic not near genes chr3L_9_16180001 chr3L_16180001 RAL-41 642 chr3L 16184106 16184130 chr3L 16188925 16188938 X-element 6 4817 2.0 2.0 2.0 2.0 4832 chr3L 16184106 intergenic not near genes chr3L 16186522 intergenic not near genes chr3L 16188938 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-41 643 chr3L 16443855 16443873 chr3L 16446195 16446210 Doc 6 2339 0.5 2.5 1.5 2.4 2355 chr3L 16443855 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446210 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-41 644 chr3L 16450027 16450051 chr3L 16450112 16450136 7 83 0.0 1.5 0.8 3.9 109 chr3L 16450027 intron,intron CG33158 +,dsx-c73A - chr3L 16450082 intron,intron CG33158 +,dsx-c73A - chr3L 16450136 intron,intron CG33158 +,dsx-c73A - chr3L_7_16450001 chr3L_16450001 RAL-41 645 chr3L 16493978 16494011 chr3L 16494494 16494527 jockey 7 515 4.0 3.0 3.5 1.6 549 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-41 646 chr3L 16533571 16533577 chr3L 16533682 16533688 5 111 1.5 2.5 2.0 1.7 117 chr3L 16533571 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533688 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-41 647 chr3L 16536800 16536833 chr3L 16537190 16537223 7 390 2.0 1.5 1.8 2.5 423 chr3L 16536800 intron CG43373 - chr3L 16537012 intron CG43373 - chr3L 16537223 intron CG43373 - chr3L_7_16535001 chr3L_16535001 RAL-41 648 chr3L 16540053 16540084 chr3L 16540141 16540172 4 88 1.0 2.0 1.5 1.6 119 chr3L 16540053 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540172 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-41 649 chr3L 16632779 16632813 chr3L 16640290 16640323 8 7511 19.5 15.5 17.5 0.4 7544 chr3L 16632779 intron Abl - chr3L 16636551 intron Abl - chr3L 16640323 intron Abl - chr3L_8_16635001 chr3L_16635001 RAL-41 650 chr3L 16684017 16684050 chr3L 16689238 16689270 copia 5 5221 0.5 0.5 0.5 3.3 5253 chr3L 16684017 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689270 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_5_16685001 chr3L_16685001 RAL-41 651 chr3L 16945731 16945757 chr3L 16954884 16954909 roo 7 9152 4.5 4.0 4.2 1.3 9178 chr3L 16945731 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954909 5` UTR Nc73EF + chr3L_7_16950001 chr3L_16950001 RAL-41 652 chr3L 17026792 17026820 chr3L 17026870 17026871 6 74 3.0 1.0 2.0 2.0 79 chr3L 17026792 exon Fit2 + chr3L 17026832 3` UTR Fit2 + chr3L 17026871 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-41 653 chr3L 17085012 17085028 chr3L 17094161 17094177 roo 4 9149 2.5 2.5 2.5 1.1 9165 chr3L 17085012 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094177 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-41 654 chr3L 17117120 17117130 chr3L 17117204 17117214 4 84 0.5 3.5 2.0 1.3 94 chr3L 17117120 intron Rbp6 - chr3L 17117167 intron Rbp6 - chr3L 17117214 intron Rbp6 - chr3L_4_17115001 chr3L_17115001 RAL-41 655 chr3L 17144156 17144184 chr3L 17144240 17144268 4 84 0.5 0.5 0.5 2.7 112 chr3L 17144156 intron Rbp6 - chr3L 17144212 intron Rbp6 - chr3L 17144268 intron Rbp6 - chr3L_4_17140001 chr3L_17140001 RAL-41 656 chr3L 17149166 17149179 chr3L 17149245 17149260 5 81 3.5 0.0 1.8 1.8 94 chr3L 17149166 intron Rbp6 - chr3L 17149213 intron Rbp6 - chr3L 17149260 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-41 657 chr3L 17367434 17367458 chr3L 17367528 17367552 9 94 4.0 1.5 2.8 2.4 118 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367493 intergenic CR45688 +,Cad74A - chr3L 17367552 intergenic CR45688 +,Cad74A - chr3L_9_17365001 chr3L_17365001 RAL-41 658 chr3L 17510745 17510760 chr3L 17510829 17510844 7 84 0.5 2.5 1.5 2.8 99 chr3L 17510745 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510844 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-41 659 chr3L 17516979 17517010 chr3L 17524537 17524566 412 6 7557 0.0 0.5 0.2 5.0 7587 chr3L 17516979 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524566 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-41 660 chr3L 18092782 18092802 chr3L 18092896 18092917 6 114 2.0 0.0 1.0 3.0 135 chr3L 18092782 intron CG13698 - chr3L 18092850 intron CG13698 - chr3L 18092917 intron CG13698 - chr3L_6_18090001 chr3L_18090001 RAL-41 661 chr3L 18119660 18119674 chr3L 18119758 18119772 4 98 0.0 1.5 0.8 2.2 112 chr3L 18119660 intron CG7341 + chr3L 18119716 intron CG7341 + chr3L 18119772 intron CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-41 662 chr3L 18224211 18224238 chr3L 18224296 18224324 6 86 1.5 0.0 0.8 3.3 113 chr3L 18224211 intergenic not near genes chr3L 18224268 intergenic not near genes chr3L 18224324 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-41 663 chr3L 18248960 18248979 chr3L 18249058 18249077 6 98 0.5 1.0 0.8 3.3 117 chr3L 18248960 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249077 intergenic not near genes chr3L_6_18245001 chr3L_18245001 RAL-41 664 chr3L 18301349 18301375 chr3L 18301438 18301464 6 89 0.0 1.0 0.5 4.0 115 chr3L 18301349 intergenic CG13700 - chr3L 18301406 intergenic CG13700 - chr3L 18301464 intergenic CG13700 - chr3L_6_18300001 chr3L_18300001 RAL-41 665 chr3L 18436071 18436092 chr3L 18436169 18436190 4 96 1.0 2.5 1.8 1.4 119 chr3L 18436071 intergenic not near genes chr3L 18436130 intergenic not near genes chr3L 18436190 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-41 666 chr3L 18582217 18582248 chr3L 18582302 18582332 6 84 4.0 1.5 2.8 1.6 115 chr3L 18582217 intergenic not near genes chr3L 18582274 intergenic not near genes chr3L 18582332 intergenic not near genes chr3L_6_18580001 chr3L_18580001 RAL-41 667 chr3L 18638577 18638604 chr3L 18638671 18638698 4 94 1.0 1.0 1.0 2.0 121 chr3L 18638577 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638698 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-41 668 chr3L 18679689 18679705 chr3L 18679795 18679811 5 106 0.5 3.5 2.0 1.7 122 chr3L 18679689 intergenic not near genes chr3L 18679750 intergenic not near genes chr3L 18679811 intergenic not near genes chr3L_5_18675001 chr3L_18675001 RAL-41 669 chr3L 18772410 18772441 chr3L 18781091 18781122 roo 10 8681 2.0 2.5 2.2 3.1 8712 chr3L 18772410 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-41 670 chr3L 18969605 18969619 chr3L 18969701 18969708 5 92 1.5 2.0 1.8 1.8 103 chr3L 18969605 intergenic not near genes chr3L 18969656 intergenic not near genes chr3L 18969708 intergenic not near genes chr3L_5_18965001 chr3L_18965001 RAL-41 671 chr3L 19008859 19008870 chr3L 19009178 19009185 jockey 4 327 3.0 2.5 2.8 1.1 326 chr3L 19008859 intron nkd - chr3L 19009022 intron nkd - chr3L 19009185 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-41 672 chr3L 19025937 19025967 chr3L 19026020 19026049 6 82 1.0 1.0 1.0 3.0 112 chr3L 19025937 intron nkd - chr3L 19025993 intron nkd - chr3L 19026049 intron nkd - chr3L_6_19025001 chr3L_19025001 RAL-41 673 chr3L 19064140 19064164 chr3L 19064245 19064269 7 105 2.0 2.5 2.2 2.2 129 chr3L 19064140 intron CG6812 + chr3L 19064204 intron CG6812 + chr3L 19064269 intron CG6812 + chr3L_7_19060001 chr3L_19060001 RAL-41 674 chr3L 19117040 19117075 chr3L 19124487 19124522 mdg1 7 7446 1.0 0.5 0.8 3.9 7482 chr3L 19117040 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-41 675 chr3L 19208075 19208086 chr3L 19209445 19209455 Doc 5 1371 0.5 4.0 2.2 1.6 1380 chr3L 19208075 intron fz2 - chr3L 19208765 intron fz2 - chr3L 19209455 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-41 676 chr3L 19228400 19228420 chr3L 19228493 19228513 5 93 2.5 3.0 2.8 1.3 113 chr3L 19228400 intron fz2 - chr3L 19228456 intron fz2 - chr3L 19228513 intron fz2 - chr3L_5_19225001 chr3L_19225001 RAL-41 677 chr3L 19232888 19232893 chr3L 19232970 19232975 4 82 1.0 2.0 1.5 1.6 87 chr3L 19232888 intron fz2 - chr3L 19232932 intron fz2 - chr3L 19232975 intron fz2 - chr3L_4_19230001 chr3L_19230001 RAL-41 678 chr3L 19426768 19426780 chr3L 19426827 19426857 4 72 1.0 2.5 1.8 1.4 89 chr3L 19426768 intergenic not near genes chr3L 19426812 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_4_19425001 chr3L_19425001 RAL-41 679 chr3L 19459458 19459484 chr3L 19460208 19460234 8 747 2.0 2.5 2.2 2.5 776 chr3L 19459458 intergenic not near genes chr3L 19459846 intergenic not near genes chr3L 19460234 intergenic not near genes chr3L_8_19455001 chr3L_19455001 RAL-41 680 chr3L 19655905 19655921 chr3L 19656021 19656037 5 116 1.5 0.0 0.8 2.8 132 chr3L 19655905 intron tey - chr3L 19655971 intron tey - chr3L 19656037 intron tey - chr3L_5_19655001 chr3L_19655001 RAL-41 681 chr3L 19981210 19981226 chr3L 19981290 19981306 5 80 0.5 0.5 0.5 3.3 96 chr3L 19981210 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981306 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-41 682 chr3L 20040510 20040535 chr3L 20040928 20040953 invader3 7 418 2.5 1.0 1.8 2.5 443 chr3L 20040510 intergenic not near genes chr3L 20040732 intergenic not near genes chr3L 20040953 intergenic not near genes chr3L_7_20040001 chr3L_20040001 RAL-41 683 chr3L 20081744 20081769 chr3L 20081825 20081852 4 82 0.0 1.5 0.8 2.2 108 chr3L 20081744 intron sNPF-R - chr3L 20081798 intron sNPF-R - chr3L 20081852 intron sNPF-R - chr3L_4_20080001 chr3L_20080001 RAL-41 684 chr3L 20113474 20113492 chr3L 20113569 20113587 7 95 1.5 1.5 1.5 2.8 113 chr3L 20113474 intergenic not near genes chr3L 20113530 intergenic not near genes chr3L 20113587 intergenic not near genes chr3L_7_20110001 chr3L_20110001 RAL-41 685 chr3L 20113658 20113689 chr3L 20122915 20122946 roo 6 9255 2.0 1.5 1.8 2.1 9288 chr3L 20113658 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122946 intergenic not near genes chr3L_6_20115001 chr3L_20115001 RAL-41 686 chr3L 20143081 20143118 chr3L 20143160 20143198 7 79 1.5 0.5 1.0 3.5 117 chr3L 20143081 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143198 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-41 687 chr3L 20148288 20148305 chr3L 20148377 20148395 5 90 3.5 1.5 2.5 1.4 107 chr3L 20148288 intergenic not near genes chr3L 20148342 intergenic not near genes chr3L 20148395 intergenic not near genes chr3L_5_20145001 chr3L_20145001 RAL-41 688 chr3L 20257333 20257351 chr3L 20258453 20258467 pogo 9 1119 3.5 1.0 2.2 2.8 1134 chr3L 20257333 intron rdgC + chr3L 20257900 intron rdgC + chr3L 20258467 intron rdgC + chr3L_9_20255001 chr3L_20255001 RAL-41 689 chr3L 20283678 20283707 chr3L 20283762 20283791 5 84 2.0 2.0 2.0 1.7 113 chr3L 20283678 intron gogo - chr3L 20283734 intron gogo - chr3L 20283791 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-41 690 chr3L 20345606 20345638 chr3L 20345686 20345717 4 80 5.0 5.5 5.2 0.6 111 chr3L 20345606 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345717 intergenic Rbbp5 - chr3L_4_20345001 chr3L_20345001 RAL-41 691 chr3L 20386949 20386972 chr3L 20387051 20387074 5 102 2.5 4.0 3.2 1.2 125 chr3L 20386949 intron fbl + chr3L 20387012 intron fbl + chr3L 20387074 intron fbl + chr3L_5_20385001 chr3L_20385001 RAL-41 692 chr3L 20668454 20668481 chr3L 20668530 20668558 5 74 4.0 4.5 4.2 1.0 104 chr3L 20668454 intergenic not near genes chr3L 20668506 intergenic not near genes chr3L 20668558 intergenic not near genes chr3L_5_20665001 chr3L_20665001 RAL-41 693 chr3L 20781383 20781411 chr3L 20781469 20781497 4 86 2.0 4.5 3.2 1.0 114 chr3L 20781383 3` UTR CG11399 - chr3L 20781440 3` UTR CG11399 - chr3L 20781497 3` UTR CG11399 - chr3L_4_20780001 chr3L_20780001 RAL-41 694 chr3L 20821271 20821307 chr3L 20824740 20824776 NOF 5 3469 0.5 1.5 1.0 2.5 3505 chr3L 20821271 intron Pka-R1 + chr3L 20823024 intron Pka-R1 + chr3L 20824776 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-41 695 chr3L 20826363 20826385 chr3L 20826554 20826572 7 190 4.0 2.0 3.0 1.8 209 chr3L 20826363 intron Pka-R1 + chr3L 20826468 intron Pka-R1 + chr3L 20826572 intron Pka-R1 + chr3L_7_20825001 chr3L_20825001 RAL-41 696 chr3L 20849271 20849297 chr3L 20849350 20849376 4 79 2.5 2.0 2.2 1.2 105 chr3L 20849271 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-41 697 chr3L 21014919 21014946 chr3L 21023400 21023427 Tirant 5 8476 1.5 3.0 2.2 1.6 8508 chr3L 21014919 intron skd - chr3L 21019173 intron skd - chr3L 21023427 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-41 698 chr3L 21082214 21082228 chr3L 21082292 21082306 4 78 0.5 1.5 1.0 2.0 92 chr3L 21082214 intron ko - chr3L 21082260 intron ko - chr3L 21082306 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-41 699 chr3L 21186066 21186088 chr3L 21186141 21186163 4 74 12.0 11.0 11.5 0.3 97 chr3L 21186066 intron CG42337 - chr3L 21186114 intron CG42337 - chr3L 21186163 intron CG42337 - chr3L_4_21185001 chr3L_21185001 RAL-41 700 chr3L 21372732 21372751 chr3L 21379240 21379259 McClintock 4 6508 0.5 1.0 0.8 2.2 6527 chr3L 21372732 intergenic not near genes chr3L 21375996 intergenic not near genes chr3L 21379259 intergenic not near genes chr3L_4_21375001 chr3L_21375001 RAL-41 701 chr3L 21407005 21407024 chr3L 21407084 21407103 5 79 2.5 2.0 2.2 1.6 98 chr3L 21407005 intron rgn + chr3L 21407054 intron rgn + chr3L 21407103 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-41 702 chr3L 21498844 21498860 chr3L 21500480 21500494 1360 7 1634 3.5 2.5 3.0 1.8 1650 chr3L 21498844 intron Glg1 - chr3L 21499669 intron Glg1 - chr3L 21500494 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-41 703 chr3L 21584167 21584170 chr3L 21584280 21584283 4 112 2.0 1.5 1.8 1.4 116 chr3L 21584167 intergenic not near genes chr3L 21584225 intergenic not near genes chr3L 21584283 intergenic not near genes chr3L_4_21580001 chr3L_21580001 RAL-41 704 chr3L 21649778 21649802 chr3L 21649999 21650026 5 223 1.5 2.0 1.8 1.8 248 chr3L 21649778 intron CG43980 + chr3L 21649902 intron CG43980 + chr3L 21650026 intron CG43980 + chr3L_5_21645001 chr3L_21645001 RAL-41 705 chr3L 21650915 21650940 chr3L 21651091 21651114 4 175 1.5 1.5 1.5 1.6 199 chr3L 21650915 intron CG43980 + chr3L 21651014 intron CG43980 + chr3L 21651114 intron CG43980 + chr3L_4_21650001 chr3L_21650001 RAL-41 706 chr3L 21710329 21710354 chr3L 21710544 21710569 4 215 8.5 9.5 9.0 0.4 240 chr3L 21710329 intergenic not near genes chr3L 21710449 intergenic not near genes chr3L 21710569 intergenic not near genes chr3L_4_21710001 chr3L_21710001 RAL-41 707 chr3L 21742503 21742528 chr3L 21742607 21742631 10 102 4.0 1.5 2.8 2.6 128 chr3L 21742503 intergenic CG14572 + chr3L 21742567 intergenic CG14572 + chr3L 21742631 intergenic CG14572 + chr3L_10_21740001 chr3L_21740001 RAL-41 708 chr3L 21749330 21749347 chr3L 21754490 21754507 Doc 6 5159 1.5 1.5 1.5 2.4 5177 chr3L 21749330 intron Syn1 - chr3L 21751918 intron Syn1 - chr3L 21754507 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-41 709 chr3L 21799943 21799958 chr3L 21800028 21800043 5 85 2.5 1.0 1.8 1.8 100 chr3L 21799943 intergenic not near genes chr3L 21799993 intergenic not near genes chr3L 21800043 intergenic not near genes chr3L_5_21795001 chr3L_21795001 RAL-41 710 chr3L 21840846 21840870 chr3L 21840969 21840993 5 123 4.5 2.5 3.5 1.1 147 chr3L 21840846 intron P5CDh1 - chr3L 21840920 intron P5CDh1 - chr3L 21840993 intron P5CDh1 - chr3L_5_21840001 chr3L_21840001 RAL-41 711 chr3L 22130501 22130520 chr3L 22130647 22130666 4 146 0.5 0.5 0.5 2.7 165 chr3L 22130501 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130666 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-41 712 chr3L 22215061 22215095 chr3L 22215139 22215162 8 72 1.5 0.5 1.0 4.0 101 chr3L 22215061 intron olf413 + chr3L 22215112 intron olf413 + chr3L 22215162 intron olf413 + chr3L_8_22215001 chr3L_22215001 RAL-41 713 chr3L 22370731 22370754 chr3L 22370812 22370833 4 80 1.0 1.0 1.0 2.0 102 chr3L 22370731 intron Ten-m - chr3L 22370782 intron Ten-m - chr3L 22370833 intron Ten-m - chr3L_4_22370001 chr3L_22370001 RAL-41 714 chr3L 22382655 22382694 chr3L 22382738 22382770 10 80 0.0 1.5 0.8 5.6 115 chr3L 22382655 intron Ten-m - chr3L 22382712 intron Ten-m - chr3L 22382770 intron Ten-m - chr3L_10_22380001 chr3L_22380001 RAL-41 715 chr3L 22447196 22447214 chr3L 22447287 22447305 6 89 4.5 2.5 3.5 1.3 109 chr3L 22447196 intergenic not near genes chr3L 22447250 intergenic not near genes chr3L 22447305 intergenic not near genes chr3L_6_22445001 chr3L_22445001 RAL-41 716 chr3L 22507121 22507151 chr3L 22507208 22507237 7 80 1.0 1.5 1.2 3.2 116 chr3L 22507121 intergenic not near genes chr3L 22507179 intergenic not near genes chr3L 22507237 intergenic not near genes chr3L_7_22505001 chr3L_22505001 RAL-41 717 chr3L 22555768 22555803 chr3L 22563238 22563270 blood 5 7467 1.0 0.5 0.8 2.8 7502 chr3L 22555768 intergenic not near genes chr3L 22559519 intergenic not near genes chr3L 22563270 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-41 718 chr3L 22577624 22577648 chr3L 22582410 22582436 Doc 10 4786 1.5 2.5 2.0 3.3 4812 chr3L 22577624 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-41 719 chr3L 22617191 22617221 chr3L 22624643 22624673 blood 7 7450 2.0 0.5 1.2 3.2 7482 chr3L 22617191 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-41 720 chr3L 22826207 22826240 chr3L 22826304 22826337 4 96 1.0 2.0 1.5 1.6 130 chr3L 22826207 intron jim - chr3L 22826272 intron jim - chr3L 22826337 intron jim - chr3L_4_22825001 chr3L_22825001 RAL-41 721 chr3L 22885243 22885273 chr3L 22885349 22885377 5 105 1.5 1.0 1.2 2.3 134 chr3L 22885243 intron slif + chr3L 22885310 intron slif + chr3L 22885377 intron slif + chr3L_5_22885001 chr3L_22885001 RAL-41 722 chr3L 22909029 22909053 chr3L 22909117 22909144 15 89 1.5 3.0 2.2 4.7 115 chr3L 22909029 intergenic CR45661 + chr3L 22909086 intergenic CR45661 + chr3L 22909144 intergenic CR45661 + chr3L_15_22905001 chr3L_22905001 RAL-41 723 chr3L 23101589 23101605 chr3L 23101667 23101683 4 78 0.5 0.5 0.5 2.7 94 chr3L 23101589 intron CkIIalpha + chr3L 23101636 intron CkIIalpha + chr3L 23101683 intron CkIIalpha + chr3L_4_23100001 chr3L_23100001 RAL-41 724 chr3L 23204703 23204729 chr3L 23204791 23204816 10 86 3.5 3.5 3.5 2.2 113 chr3L 23204703 intergenic not near genes chr3L 23204760 intergenic not near genes chr3L 23204816 intergenic not near genes chr3L_10_23200001 chr3L_23200001 RAL-41 725 chr3L 23251941 23251973 chr3L 23252058 23252089 4 117 0.5 0.5 0.5 2.7 148 chr3L 23251941 intron nAChRalpha4 + chr3L 23252015 intron nAChRalpha4 + chr3L 23252089 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-41 726 chr3L 23428243 23428273 chr3L 23428323 23428353 9 78 2.5 1.5 2.0 3.0 110 chr3L 23428243 intergenic not near genes chr3L 23428298 intergenic not near genes chr3L 23428353 intergenic not near genes chr3L_9_23425001 chr3L_23425001 RAL-41 727 chr3L 23913448 23913464 chr3L 23913539 23913555 4 91 0.5 0.5 0.5 2.7 107 chr3L 23913448 intron CG40470 - chr3L 23913502 intron CG40470 - chr3L 23913555 intron CG40470 - chr3L_4_23910001 chr3L_23910001 RAL-41 728 chr3L 25464022 25464098 chr3L 25464107 25464194 8 88 2.0 1.0 1.5 3.2 172 chr3L 25464022 intergenic not near genes chr3L 25464108 intergenic not near genes chr3L 25464194 intergenic not near genes chr3L_8_25460001 chr3L_25460001 RAL-41 729 chr3L 25513579 25513607 chr3L 25513657 25513684 4 78 0.0 3.5 1.8 1.4 105 chr3L 25513579 intron CG41343 - chr3L 25513632 intron CG41343 - chr3L 25513684 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-41 730 chr3L 25514885 25514897 chr3L 25514977 25514989 4 92 2.0 3.5 2.8 1.1 104 chr3L 25514885 intron CG41343 - chr3L 25514937 intron CG41343 - chr3L 25514989 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-41 731 chr3L 25628497 25628523 chr3L 25633266 25633294 F-element 6 4770 1.5 1.5 1.5 2.4 4797 chr3L 25628497 intron CG41343 - chr3L 25630896 intron CG41343 - chr3L 25633294 intron CG41343 - chr3L_6_25630001 chr3L_25630001 RAL-41 732 chr3L 26694932 26694949 chr3L 26695010 26695029 5 79 3.0 1.0 2.0 1.7 97 chr3L 26694932 intergenic not near genes chr3L 26694980 intergenic not near genes chr3L 26695029 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-41 733 chr3L 27284251 27284279 chr3L 27284357 27284385 7 105 1.5 3.5 2.5 2.0 134 chr3L 27284251 intron Dbp80 + chr3L 27284318 intron Dbp80 + chr3L 27284385 intron Dbp80 + chr3L_7_27280001 chr3L_27280001 RAL-41 734 chr3R 2534157 2534160 chr3R 2541701 2541726 6 7560 8.0 5.5 6.8 0.8 7569 chr3R 2534157 intergenic not near genes chr3R 2537942 intergenic not near genes chr3R 2541726 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-41 735 chr3R 4408420 4408445 chr3R 4412724 4412749 Juan 4 4303 0.0 3.0 1.5 1.6 4329 chr3R 4408420 intron CG32944 - chr3R 4410584 intron CG32944 - chr3R 4412749 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-41 736 chr3R 4634337 4634372 chr3R 4634424 4634459 4 87 1.5 2.0 1.8 1.4 122 chr3R 4634337 intergenic not near genes chr3R 4634398 intergenic not near genes chr3R 4634459 intergenic not near genes chr3R_4_4630001 chr3R_4630001 RAL-41 737 chr3R 4657291 4657317 chr3R 4657380 4657406 6 89 1.0 1.5 1.2 2.7 115 chr3R 4657291 intron spartin + chr3R 4657348 intron spartin + chr3R 4657406 intron spartin + chr3R_6_4655001 chr3R_4655001 RAL-41 738 chr3R 4665083 4665106 chr3R 4665162 4665185 6 77 2.5 3.5 3.0 1.5 102 chr3R 4665083 intron CG43427 + chr3R 4665134 intron CG43427 + chr3R 4665185 intron CG43427 + chr3R_6_4665001 chr3R_4665001 RAL-41 739 chr3R 4753254 4753268 chr3R 4757557 4757571 F-element 4 4303 4.0 3.5 3.8 0.8 4317 chr3R 4753254 intron,intron atms +,CG44098 - chr3R 4755412 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-41 740 chr3R 4769168 4769188 chr3R 4769246 4769266 6 78 2.5 1.0 1.8 2.1 98 chr3R 4769168 intron,intron atms +,CG44098 - chr3R 4769217 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-41 741 chr3R 4784515 4784550 chr3R 4791388 4791423 17 6874 17.5 21.5 19.5 0.8 6908 chr3R 4784515 exon CG17387 - chr3R 4787969 exon ctrip - chr3R 4791423 exon ctrip - chr3R_17_4785001 chr3R_4785001 RAL-41 742 chr3R 4887486 4887499 chr3R 4894863 4894876 rover 5 7377 2.5 3.5 3.0 1.2 7390 chr3R 4887486 intergenic not near genes chr3R 4891181 intergenic not near genes chr3R 4894876 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-41 743 chr3R 4922354 4922362 chr3R 4922430 4922430 5 75 1.0 6.0 3.5 1.1 76 chr3R 4922354 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922430 intron Cdep + chr3R_5_4920001 chr3R_4920001 RAL-41 744 chr3R 4975937 4975961 chr3R 4976038 4976062 4 101 1.0 1.5 1.2 1.8 125 chr3R 4975937 intergenic not near genes chr3R 4976000 intergenic not near genes chr3R 4976062 intergenic not near genes chr3R_4_4975001 chr3R_4975001 RAL-41 745 chr3R 5045845 5045871 chr3R 5052945 5052973 HMS-Beagle 4 7101 4.5 3.0 3.8 0.8 7128 chr3R 5045845 intron CR43635 - chr3R 5049409 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-41 746 chr3R 5067984 5068010 chr3R 5073501 5073527 mdg3 5 5517 0.5 1.5 1.0 2.5 5543 chr3R 5067984 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-41 747 chr3R 5142301 5142315 chr3R 5142383 5142398 6 82 5.0 1.5 3.2 1.4 97 chr3R 5142301 intergenic not near genes chr3R 5142350 intergenic not near genes chr3R 5142398 intergenic not near genes chr3R_6_5140001 chr3R_5140001 RAL-41 748 chr3R 5158158 5158177 chr3R 5158251 5158270 5 93 1.0 6.5 3.8 1.0 112 chr3R 5158158 intron dpr16 + chr3R 5158214 intron dpr16 + chr3R 5158270 intron dpr16 + chr3R_5_5155001 chr3R_5155001 RAL-41 749 chr3R 5437970 5437985 chr3R 5438080 5438095 5 110 3.0 1.0 2.0 1.7 125 chr3R 5437970 intron CG14669 + chr3R 5438032 intron CG14669 + chr3R 5438095 intron CG14669 + chr3R_5_5435001 chr3R_5435001 RAL-41 750 chr3R 5515135 5515162 chr3R 5515212 5515238 8 77 2.0 2.0 2.0 2.7 103 chr3R 5515135 intron Nmdar1 - chr3R 5515186 intron Nmdar1 - chr3R 5515238 intron Nmdar1 - chr3R_8_5515001 chr3R_5515001 RAL-41 751 chr3R 5525930 5525950 chr3R 5526071 5526092 4 141 2.0 1.5 1.8 1.4 162 chr3R 5525930 intron Itp-r83A + chr3R 5526011 intron Itp-r83A + chr3R 5526092 intron Itp-r83A + chr3R_4_5525001 chr3R_5525001 RAL-41 752 chr3R 5627150 5627174 chr3R 5627560 5627582 5 410 3.0 1.5 2.2 1.6 432 chr3R 5627150 intergenic not near genes chr3R 5627366 intergenic CG31551 + chr3R 5627582 intergenic CG31551 + chr3R_5_5625001 chr3R_5625001 RAL-41 753 chr3R 5712091 5712112 chr3R 5712172 5712198 6 85 1.0 1.5 1.2 2.7 107 chr3R 5712091 3` UTR plx + chr3R 5712144 3` UTR plx + chr3R 5712198 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-41 754 chr3R 5746020 5746046 chr3R 5746260 5746287 pogo 6 240 4.5 4.0 4.2 1.2 267 chr3R 5746020 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-41 755 chr3R 5846432 5846460 chr3R 5849906 5849936 5 3475 8.5 11.0 9.8 0.5 3504 chr3R 5846432 3` UTR CG1213 + chr3R 5848184 intergenic CG14676 + chr3R 5849936 3` UTR disp - chr3R_5_5845001 chr3R_5845001 RAL-41 756 chr3R 5896966 5897000 chr3R 5897324 5897356 5 358 1.5 0.0 0.8 2.8 390 chr3R 5896966 intron CG34113 - chr3R 5897161 intron CG34113 - chr3R 5897356 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-41 757 chr3R 5927562 5927583 chr3R 5927801 5927823 pogo 6 240 2.5 3.0 2.8 1.6 261 chr3R 5927562 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927823 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-41 758 chr3R 5947961 5948001 chr3R 5948056 5948086 7 86 1.5 0.5 1.0 3.5 125 chr3R 5947961 intron CG34113 - chr3R 5948024 intron CG34113 - chr3R 5948086 intron CG34113 - chr3R_7_5945001 chr3R_5945001 RAL-41 759 chr3R 6015964 6015982 chr3R 6024444 6024462 Tirant 4 8480 4.0 0.5 2.2 1.2 8498 chr3R 6015964 intergenic not near genes chr3R 6020213 intergenic not near genes chr3R 6024462 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-41 760 chr3R 6048445 6048469 chr3R 6048528 6048552 5 82 4.0 0.0 2.0 1.7 107 chr3R 6048445 intergenic not near genes chr3R 6048498 intergenic not near genes chr3R 6048552 intergenic not near genes chr3R_5_6045001 chr3R_6045001 RAL-41 761 chr3R 6158044 6158072 chr3R 6158393 6158406 6 346 0.0 1.0 0.5 4.0 362 chr3R 6158044 intergenic not near genes chr3R 6158225 intergenic not near genes chr3R 6158406 intergenic not near genes chr3R_6_6155001 chr3R_6155001 RAL-41 762 chr3R 6169751 6169783 chr3R 6169840 6169872 10 89 2.5 5.0 3.8 2.1 121 chr3R 6169751 exon CG1077 + chr3R 6169812 exon CG1077 + chr3R 6169872 exon CG1077 + chr3R_10_6165001 chr3R_6165001 RAL-41 763 chr3R 6175180 6175203 chr3R 6182452 6182461 HMS-Beagle2 6 7270 1.0 3.5 2.2 1.9 7281 chr3R 6175180 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182461 intergenic CR45194 + chr3R_6_6175001 chr3R_6175001 RAL-41 764 chr3R 6183475 6183506 chr3R 6183581 6183612 6 106 1.5 1.5 1.5 2.4 137 chr3R 6183475 intergenic not near genes chr3R 6183544 intergenic not near genes chr3R 6183612 intergenic not near genes chr3R_6_6180001 chr3R_6180001 RAL-41 765 chr3R 6737500 6737524 chr3R 6739287 6739311 Doc 10 1787 2.5 0.5 1.5 4.0 1811 chr3R 6737500 intron pb - chr3R 6738406 intron pb - chr3R 6739311 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-41 766 chr3R 6804205 6804217 chr3R 6804314 6804326 5 109 4.0 1.5 2.8 1.3 121 chr3R 6804205 intergenic not near genes chr3R 6804266 intergenic not near genes chr3R 6804326 intergenic not near genes chr3R_5_6800001 chr3R_6800001 RAL-41 767 chr3R 6891252 6891359 chr3R 6891328 6891555 5 173 1.0 1.5 1.2 2.3 303 chr3R 6891252 intergenic not near genes chr3R 6891404 intergenic not near genes chr3R 6891555 intergenic not near genes chr3R_5_6890001 chr3R_6890001 RAL-41 768 chr3R 6918062 6918093 chr3R 6918140 6918169 11 78 1.5 1.5 1.5 4.4 107 chr3R 6918062 intron Antp - chr3R 6918116 intron Antp - chr3R 6918169 intron Antp - chr3R_11_6915001 chr3R_6915001 RAL-41 769 chr3R 7103287 7103315 chr3R 7103363 7103391 5 73 1.0 1.5 1.2 2.3 104 chr3R 7103287 intron Alh - chr3R 7103339 intron Alh - chr3R 7103391 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-41 770 chr3R 7217458 7217486 chr3R 7217679 7217707 4 221 1.0 1.0 1.0 2.0 249 chr3R 7217458 intergenic CG14605 -,CG14606 - chr3R 7217582 intergenic CG14605 -,CG14606 - chr3R 7217707 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-41 771 chr3R 7418064 7418087 chr3R 7418381 7418403 4 317 1.0 2.0 1.5 1.6 339 chr3R 7418064 intergenic not near genes chr3R 7418234 intergenic not near genes chr3R 7418403 intergenic not near genes chr3R_4_7415001 chr3R_7415001 RAL-41 772 chr3R 7438912 7438945 chr3R 7438990 7439023 6 78 2.5 0.0 1.2 2.7 111 chr3R 7438912 intergenic not near genes chr3R 7438968 intergenic not near genes chr3R 7439023 intergenic not near genes chr3R_6_7435001 chr3R_7435001 RAL-41 773 chr3R 7536726 7536731 chr3R 7536881 7536886 4 155 7.0 14.0 10.5 0.3 160 chr3R 7536726 3` UTR alpha-Est4 - chr3R 7536806 exon alpha-Est4 - chr3R 7536886 exon alpha-Est4 - chr3R_4_7535001 chr3R_7535001 RAL-41 774 chr3R 7589798 7589828 chr3R 7589918 7589947 6 120 0.0 3.0 1.5 2.4 149 chr3R 7589798 intron CG34127 - chr3R 7589872 intron CG34127 - chr3R 7589947 intron CG34127 - chr3R_6_7585001 chr3R_7585001 RAL-41 775 chr3R 7724447 7724474 chr3R 7724537 7724557 5 82 3.0 3.0 3.0 1.2 110 chr3R 7724447 3` UTR CG2616 + chr3R 7724502 3` UTR CG2616 + chr3R 7724557 3` UTR CG2616 + chr3R_5_7720001 chr3R_7720001 RAL-41 776 chr3R 7729467 7729481 chr3R 7737405 7737418 Stalker2 5 7937 3.0 2.0 2.5 1.4 7951 chr3R 7729467 intergenic not near genes chr3R 7733442 intergenic not near genes chr3R 7737418 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-41 777 chr3R 7744933 7744954 chr3R 7745198 7745215 7 264 3.5 1.5 2.5 2.0 282 chr3R 7744933 intergenic not near genes chr3R 7745074 intergenic not near genes chr3R 7745215 intergenic not near genes chr3R_7_7745001 chr3R_7745001 RAL-41 778 chr3R 7830303 7830323 chr3R 7830452 7830473 6 150 1.0 3.5 2.2 1.9 170 chr3R 7830303 intron CG34384 + chr3R 7830388 intron CG34384 + chr3R 7830473 intron CG34384 + chr3R_6_7830001 chr3R_7830001 RAL-41 779 chr3R 7849659 7849673 chr3R 7850814 7850835 1360 9 1164 1.5 1.5 1.5 3.6 1176 chr3R 7849659 intron CG34384 + chr3R 7850247 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_9_7850001 chr3R_7850001 RAL-41 780 chr3R 7951479 7951493 chr3R 7951565 7951591 4 96 2.0 3.0 2.5 1.1 112 chr3R 7951479 intron dsx - chr3R 7951535 intron dsx - chr3R 7951591 intron dsx - chr3R_4_7950001 chr3R_7950001 RAL-41 781 chr3R 8090271 8090296 chr3R 8090448 8090473 5 177 2.0 1.5 1.8 1.8 202 chr3R 8090271 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090473 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-41 782 chr3R 8094417 8094440 chr3R 8099719 8099745 Transpac 6 5304 1.5 1.5 1.5 2.4 5328 chr3R 8094417 intron CG7900 + chr3R 8097081 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-41 783 chr3R 8101772 8101793 chr3R 8104855 8104876 G2 4 3083 2.5 1.0 1.8 1.4 3104 chr3R 8101772 exon CG7900 + chr3R 8103324 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-41 784 chr3R 8182651 8182685 chr3R 8182745 8182777 6 94 1.0 1.0 1.0 3.0 126 chr3R 8182651 intergenic not near genes chr3R 8182714 intergenic not near genes chr3R 8182777 intergenic not near genes chr3R_6_8180001 chr3R_8180001 RAL-41 785 chr3R 8188385 8188520 chr3R 8188469 8188610 11 86 0.0 0.0 0.0 11.0 225 chr3R 8188385 intergenic not near genes chr3R 8188498 intergenic not near genes chr3R 8188610 intergenic not near genes chr3R_11_8185001 chr3R_8185001 RAL-41 786 chr3R 8207554 8207588 chr3R 8208398 8208422 F-element 8 843 0.0 1.0 0.5 5.3 868 chr3R 8207554 intergenic not near genes chr3R 8207988 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_8_8205001 chr3R_8205001 RAL-41 787 chr3R 8339246 8339247 chr3R 21907534 21907536 11 13568289 12.5 11.5 12.0 0.8 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-41 788 chr3R 8391187 8391207 chr3R 8391270 8391272 4 78 1.5 5.0 3.2 1.0 85 chr3R 8391187 intron CG45263 - chr3R 8391230 intron CG45263 - chr3R 8391272 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-41 789 chr3R 8403010 8403037 chr3R 8412175 8412203 roo 15 9164 2.0 1.5 1.8 5.4 9193 chr3R 8403010 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-41 790 chr3R 8418672 8418700 chr3R 8418776 8418804 6 100 4.5 4.5 4.5 1.1 132 chr3R 8418672 intron CG45263 - chr3R 8418738 intron CG45263 - chr3R 8418804 intron CG45263 - chr3R_6_8415001 chr3R_8415001 RAL-41 791 chr3R 8478079 8478110 chr3R 8478159 8478182 5 78 3.5 3.5 3.5 1.1 103 chr3R 8478079 intergenic CG45263 - chr3R 8478130 intergenic not near genes chr3R 8478182 intergenic not near genes chr3R_5_8475001 chr3R_8475001 RAL-41 792 chr3R 8570479 8570509 chr3R 8575114 8575114 HMS-Beagle 6 4630 1.5 2.0 1.8 2.1 4635 chr3R 8570479 intergenic not near genes chr3R 8572796 intergenic not near genes chr3R 8575114 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-41 793 chr3R 8744831 8744862 chr3R 8744912 8744943 5 81 1.5 2.5 2.0 1.7 112 chr3R 8744831 intron CG9801 - chr3R 8744887 intron CG9801 - chr3R 8744943 intron CG9801 - chr3R_5_8740001 chr3R_8740001 RAL-41 794 chr3R 9278781 9278810 chr3R 9284041 9284067 Rt1a 7 5259 1.5 5.5 3.5 1.6 5286 chr3R 9278781 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-41 795 chr3R 9319585 9319608 chr3R 9320018 9320040 jockey 4 434 0.5 2.0 1.2 1.8 455 chr3R 9319585 intron CG8861 - chr3R 9319812 intron CG8861 - chr3R 9320040 intron CG8861 - chr3R_4_9315001 chr3R_9315001 RAL-41 796 chr3R 9382817 9382849 chr3R 9382942 9382974 4 120 0.5 0.5 0.5 2.7 157 chr3R 9382817 intron FER - chr3R 9382896 intron FER - chr3R 9382974 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-41 797 chr3R 9601467 9601473 chr3R 9601584 9601591 4 118 1.0 3.0 2.0 1.3 124 chr3R 9601467 intron CG8312 + chr3R 9601529 intron CG8312 + chr3R 9601591 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-41 798 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286579 6.5 11.5 9.0 0.4 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-41 799 chr3R 9663623 9663656 chr3R 9663749 9663783 8 122 0.5 1.5 1.0 4.0 160 chr3R 9663623 intron CG9492 - chr3R 9663703 intron CG9492 - chr3R 9663783 intron CG9492 - chr3R_8_9660001 chr3R_9660001 RAL-41 800 chr3R 9702260 9702294 chr3R 9702335 9702364 9 74 1.0 2.0 1.5 3.6 104 chr3R 9702260 intron Unc-115a - chr3R 9702312 intron Unc-115a - chr3R 9702364 intron Unc-115a - chr3R_9_9700001 chr3R_9700001 RAL-41 801 chr3R 9936885 9936911 chr3R 9936957 9936987 9 75 2.0 2.5 2.2 2.8 102 chr3R 9936885 intron Glut4EF + chr3R 9936936 intron Glut4EF + chr3R 9936987 intron Glut4EF + chr3R_9_9935001 chr3R_9935001 RAL-41 802 chr3R 10085952 10085979 chr3R 10086250 10086277 6 298 0.0 2.0 1.0 3.0 325 chr3R 10085952 intron CR45054 + chr3R 10086114 intron CR45054 + chr3R 10086277 intron CR45054 + chr3R_6_10085001 chr3R_10085001 RAL-41 803 chr3R 10275556 10275582 chr3R 10275633 10275658 4 77 1.5 3.0 2.2 1.2 102 chr3R 10275556 intron CG43143 + chr3R 10275607 intron CG43143 + chr3R 10275658 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-41 804 chr3R 10683553 10683585 chr3R 10683666 10683680 7 110 0.5 2.5 1.5 2.8 127 chr3R 10683553 intron CR44230 + chr3R 10683616 intron CR44230 + chr3R 10683680 intron CR44230 + chr3R_7_10680001 chr3R_10680001 RAL-41 805 chr3R 10724957 10724976 chr3R 10725031 10725053 5 76 1.5 2.5 2.0 1.7 96 chr3R 10724957 intergenic not near genes chr3R 10725005 intergenic not near genes chr3R 10725053 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-41 806 chr3R 10727645 10727678 chr3R 10727725 10727758 11 80 3.5 2.5 3.0 2.8 113 chr3R 10727645 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727758 intergenic not near genes chr3R_11_10725001 chr3R_10725001 RAL-41 807 chr3R 10732861 10732874 chr3R 10732927 10732937 8 74 1.0 2.5 1.8 2.9 76 chr3R 10732861 intergenic not near genes chr3R 10732899 intergenic not near genes chr3R 10732937 intergenic not near genes chr3R_8_10730001 chr3R_10730001 RAL-41 808 chr3R 10870865 10870892 chr3R 10870946 10870973 4 81 2.5 3.0 2.8 1.1 108 chr3R 10870865 intergenic Fdh -,Tsp86D + chr3R 10870919 3` UTR Fdh - chr3R 10870973 3` UTR Fdh - chr3R_4_10870001 chr3R_10870001 RAL-41 809 chr3R 10922017 10922046 chr3R 10922103 10922132 6 85 4.0 1.0 2.5 1.7 115 chr3R 10922017 intergenic not near genes chr3R 10922074 intergenic not near genes chr3R 10922132 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-41 810 chr3R 10963563 10963587 chr3R 10963657 10963681 5 94 1.0 1.0 1.0 2.5 118 chr3R 10963563 intergenic not near genes chr3R 10963622 intergenic not near genes chr3R 10963681 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-41 811 chr3R 11159248 11159273 chr3R 11163032 11163058 4 3784 13.5 7.0 10.2 0.4 3810 chr3R 11159248 exon Ugt86Da + chr3R 11161153 intergenic CG4757 + chr3R 11163058 exon CG4757 + chr3R_4_11160001 chr3R_11160001 RAL-41 812 chr3R 11242254 11242273 chr3R 11242343 11242354 7 88 2.0 1.5 1.8 2.5 100 chr3R 11242254 3` UTR CG17734 - chr3R 11242304 3` UTR CG17734 - chr3R 11242354 3` UTR CG17734 - chr3R_7_11240001 chr3R_11240001 RAL-41 813 chr3R 11263508 11263529 chr3R 11263582 11263612 7 77 2.0 0.0 1.0 3.5 104 chr3R 11263508 intergenic not near genes chr3R 11263560 intergenic not near genes chr3R 11263612 intergenic not near genes chr3R_7_11260001 chr3R_11260001 RAL-41 814 chr3R 11342563 11342571 chr3R 11342639 11342642 4 75 1.5 3.0 2.2 1.2 79 chr3R 11342563 intron pros + chr3R 11342602 intron pros + chr3R 11342642 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-41 815 chr3R 11379236 11379265 chr3R 11388391 11388420 roo 6 9155 1.5 2.5 2.0 2.0 9184 chr3R 11379236 intron pros + chr3R 11383828 intron pros + chr3R 11388420 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-41 816 chr3R 11545970 11546004 chr3R 11546064 11546097 4 94 0.5 0.0 0.2 3.3 127 chr3R 11545970 intergenic not near genes chr3R 11546034 intergenic not near genes chr3R 11546097 intergenic not near genes chr3R_4_11545001 chr3R_11545001 RAL-41 817 chr3R 11684376 11684396 chr3R 11684573 11684594 9 198 0.5 1.0 0.8 5.0 218 chr3R 11684376 intergenic CG6830 -,CG6834 - chr3R 11684485 intergenic CG6830 -,CG6834 - chr3R 11684594 intergenic CG6834 -,CG6830 - chr3R_9_11680001 chr3R_11680001 RAL-41 818 chr3R 11694732 11694745 chr3R 11694825 11694838 4 93 4.0 0.0 2.0 1.3 106 chr3R 11694732 intergenic Fer3 - chr3R 11694785 intergenic Fer3 - chr3R 11694838 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-41 819 chr3R 11841078 11841096 chr3R 11846250 11846287 BS 6 5187 2.0 1.5 1.8 2.1 5209 chr3R 11841078 intron CG6959 - chr3R 11843682 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-41 820 chr3R 11853771 11853802 chr3R 11853872 11853907 7 103 2.5 0.0 1.2 3.2 136 chr3R 11853771 intron CG6959 - chr3R 11853839 intron CG6959 - chr3R 11853907 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-41 821 chr3R 12022886 12022916 chr3R 12025063 12025093 pogo 6 2175 1.0 1.0 1.0 3.0 2207 chr3R 12022886 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025093 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-41 822 chr3R 12267639 12267884 chr3R 12267733 12267964 4 91 0.5 0.0 0.2 3.3 325 chr3R 12267639 intron svp + chr3R 12267802 intron svp + chr3R 12267964 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-41 823 chr3R 12685417 12685446 chr3R 12685591 12685617 8 170 2.0 1.5 1.8 2.9 200 chr3R 12685417 intron kar - chr3R 12685517 intron kar - chr3R 12685617 intron kar - chr3R_8_12685001 chr3R_12685001 RAL-41 824 chr3R 12920163 12920186 chr3R 12925366 12925388 copia 5 5203 1.5 4.0 2.8 1.3 5225 chr3R 12920163 intron beat-Vb + chr3R 12922776 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-41 825 chr3R 13120773 13120800 chr3R 13120850 13120877 7 74 1.0 1.5 1.2 3.2 104 chr3R 13120773 intron timeout + chr3R 13120825 intron timeout + chr3R 13120877 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-41 826 chr3R 13135830 13135859 chr3R 13138005 13138034 pogo 6 2175 2.5 1.0 1.8 2.1 2204 chr3R 13135830 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138034 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-41 827 chr3R 13205413 13205442 chr3R 13205492 13205520 7 80 2.0 4.0 3.0 1.8 107 chr3R 13205413 intergenic not near genes chr3R 13205466 intergenic not near genes chr3R 13205520 intergenic not near genes chr3R_7_13205001 chr3R_13205001 RAL-41 828 chr3R 13206654 13206679 chr3R 13206887 13206916 7 236 1.5 1.5 1.5 2.8 262 chr3R 13206654 intergenic not near genes chr3R 13206785 intergenic not near genes chr3R 13206916 intergenic not near genes chr3R_7_13205001 chr3R_13205001 RAL-41 829 chr3R 13274212 13274244 chr3R 13274290 13274323 8 77 1.0 2.0 1.5 3.2 111 chr3R 13274212 intergenic not near genes chr3R 13274268 intergenic not near genes chr3R 13274323 intergenic not near genes chr3R_8_13270001 chr3R_13270001 RAL-41 830 chr3R 13276991 13277016 chr3R 13277080 13277100 6 88 2.0 2.5 2.2 1.9 109 chr3R 13276991 intergenic not near genes chr3R 13277046 intergenic not near genes chr3R 13277100 intergenic not near genes chr3R_6_13275001 chr3R_13275001 RAL-41 831 chr3R 13349014 13349033 chr3R 13349089 13349108 5 73 0.5 0.5 0.5 3.3 94 chr3R 13349014 intergenic not near genes chr3R 13349061 intergenic not near genes chr3R 13349108 intergenic not near genes chr3R_5_13345001 chr3R_13345001 RAL-41 832 chr3R 13380721 13380752 chr3R 13380809 13380839 6 87 1.0 2.0 1.5 2.4 118 chr3R 13380721 exon CG8870 + chr3R 13380780 exon CG8870 + chr3R 13380839 intron CG8870 + chr3R_6_13380001 chr3R_13380001 RAL-41 833 chr3R 13672940 13672972 chr3R 13673017 13673050 6 77 3.5 1.5 2.5 1.7 110 chr3R 13672940 intron Task6 - chr3R 13672995 intron Task6 - chr3R 13673050 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-41 834 chr3R 13692785 13692810 chr3R 13692862 13692888 4 78 0.5 1.0 0.8 2.2 103 chr3R 13692785 3` UTR flfl + chr3R 13692836 3` UTR flfl + chr3R 13692888 3` UTR flfl + chr3R_4_13690001 chr3R_13690001 RAL-41 835 chr3R 13693028 13693028 chr3R 21907534 21907535 11 8214507 4.0 11.5 7.8 1.2 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-41 836 chr3R 13830753 13830769 chr3R 13830917 13830930 4 163 3.0 2.0 2.5 1.1 177 chr3R 13830753 intergenic not near genes chr3R 13830842 intergenic not near genes chr3R 13830930 intergenic not near genes chr3R_4_13830001 chr3R_13830001 RAL-41 837 chr3R 13850329 13850341 chr3R 13850414 13850428 4 87 0.0 3.0 1.5 1.6 99 chr3R 13850329 intergenic not near genes chr3R 13850378 intergenic not near genes chr3R 13850428 intergenic not near genes chr3R_4_13850001 chr3R_13850001 RAL-41 838 chr3R 13918196 13918220 chr3R 13918284 13918306 9 88 2.5 1.0 1.8 3.2 110 chr3R 13918196 intergenic not near genes chr3R 13918251 intergenic not near genes chr3R 13918306 intergenic not near genes chr3R_9_13915001 chr3R_13915001 RAL-41 839 chr3R 14006110 14006136 chr3R 14006186 14006211 4 76 0.5 1.0 0.8 2.2 101 chr3R 14006110 intron rdx - chr3R 14006160 intron rdx - chr3R 14006211 intron rdx - chr3R_4_14005001 chr3R_14005001 RAL-41 840 chr3R 14021649 14021677 chr3R 14023464 14023494 S-element 5 1813 2.0 0.5 1.2 2.3 1845 chr3R 14021649 intron rdx - chr3R 14022572 intron rdx - chr3R 14023494 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-41 841 chr3R 14083412 14083438 chr3R 14083512 14083539 5 100 1.0 0.0 0.5 3.3 127 chr3R 14083412 intron foxo + chr3R 14083476 intron foxo + chr3R 14083539 intron foxo + chr3R_5_14080001 chr3R_14080001 RAL-41 842 chr3R 14246402 14246418 chr3R 14247893 14247914 jockey 5 1492 0.5 3.0 1.8 1.8 1512 chr3R 14246402 intergenic not near genes chr3R 14247158 intergenic not near genes chr3R 14247914 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-41 843 chr3R 14327698 14327720 chr3R 14327780 14327802 8 82 1.5 1.5 1.5 3.2 104 chr3R 14327698 3` UTR CG3321 + chr3R 14327750 intergenic CG3321 +,spn-B + chr3R 14327802 intergenic CG3321 +,spn-B + chr3R_8_14325001 chr3R_14325001 RAL-41 844 chr3R 14458897 14458911 chr3R 14458972 14458986 4 78 0.0 1.5 0.8 2.2 89 chr3R 14458897 intron cv-c - chr3R 14458942 intron cv-c - chr3R 14458986 intron cv-c - chr3R_4_14455001 chr3R_14455001 RAL-41 845 chr3R 14482394 14482418 chr3R 14482470 14482474 5 72 1.5 0.0 0.8 2.8 80 chr3R 14482394 intergenic not near genes chr3R 14482434 intergenic not near genes chr3R 14482474 intergenic not near genes chr3R_5_14480001 chr3R_14480001 RAL-41 846 chr3R 14677676 14677702 chr3R 14677759 14677785 8 82 0.5 4.0 2.2 2.5 109 chr3R 14677676 intron Meltrin - chr3R 14677730 intron Meltrin - chr3R 14677785 intron Meltrin - chr3R_8_14675001 chr3R_14675001 RAL-41 847 chr3R 14767991 14767996 chr3R 14768046 14768065 4 69 1.0 4.0 2.5 1.1 74 chr3R 14767991 intron jvl + chr3R 14768028 intron jvl + chr3R 14768065 intron jvl + chr3R_4_14765001 chr3R_14765001 RAL-41 848 chr3R 14768408 14768435 chr3R 14768505 14768533 5 97 4.0 1.5 2.8 1.3 125 chr3R 14768408 intron jvl + chr3R 14768470 intron jvl + chr3R 14768533 intron jvl + chr3R_5_14765001 chr3R_14765001 RAL-41 849 chr3R 14836698 14836729 chr3R 14836783 14836814 11 85 0.5 2.5 1.5 4.4 116 chr3R 14836698 intron btsz - chr3R 14836756 intron btsz - chr3R 14836814 intron btsz - chr3R_11_14835001 chr3R_14835001 RAL-41 850 chr3R 14842564 14842594 chr3R 14842648 14842677 6 78 2.5 1.0 1.8 2.1 113 chr3R 14842564 intron btsz - chr3R 14842620 intron btsz - chr3R 14842677 intron btsz - chr3R_6_14840001 chr3R_14840001 RAL-41 851 chr3R 15041426 15041459 chr3R 15045194 15045221 Doc 4 3766 1.5 0.0 0.8 2.2 3795 chr3R 15041426 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045221 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-41 852 chr3R 15078345 15078375 chr3R 15078424 15078455 15 80 1.0 3.5 2.2 4.7 110 chr3R 15078345 intergenic CG6974 - chr3R 15078400 intergenic CG6974 - chr3R 15078455 intergenic CG6974 - chr3R_15_15075001 chr3R_15075001 RAL-41 853 chr3R 15079807 15079838 chr3R 15080048 15080079 pogo 8 241 0.5 1.0 0.8 4.4 272 chr3R 15079807 3` UTR CG6966 - chr3R 15079943 3` UTR CG6966 - chr3R 15080079 3` UTR CG6966 - chr3R_8_15075001 chr3R_15075001 RAL-41 854 chr3R 15132059 15132074 chr3R 15135119 15135134 Juan 6 3060 2.0 5.5 3.8 1.2 3075 chr3R 15132059 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135134 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-41 855 chr3R 15265404 15265430 chr3R 15265489 15265515 6 85 0.5 0.5 0.5 4.0 111 chr3R 15265404 intergenic Set +,Oscp + chr3R 15265460 intergenic Oscp +,Set + chr3R 15265515 intergenic Oscp +,Set + chr3R_6_15265001 chr3R_15265001 RAL-41 856 chr3R 15416249 15416282 chr3R 15416328 15416362 8 79 0.0 1.0 0.5 5.3 113 chr3R 15416249 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416362 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-41 857 chr3R 15601163 15601195 chr3R 15608685 15608717 412 7 7521 3.5 0.0 1.8 2.5 7554 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-41 858 chr3R 15618731 15618759 chr3R 15626205 15626214 blood 7 7471 0.5 2.5 1.5 2.8 7483 chr3R 15618731 intergenic not near genes chr3R 15622472 intergenic not near genes chr3R 15626214 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-41 859 chr3R 15713455 15713482 chr3R 15713536 15713563 4 80 2.0 2.5 2.2 1.2 108 chr3R 15713455 intergenic not near genes chr3R 15713509 intergenic not near genes chr3R 15713563 intergenic not near genes chr3R_4_15710001 chr3R_15710001 RAL-41 860 chr3R 15841056 15841073 chr3R 15845395 15845428 4 4343 21.0 13.0 17.0 0.2 4372 chr3R 15841056 exon spn-E + chr3R 15843242 exon spn-E + chr3R 15845428 intron cv-d - chr3R_4_15840001 chr3R_15840001 RAL-41 861 chr3R 16003654 16003655 chr3R 16003747 16003752 4 96 4.5 2.5 3.5 0.9 98 chr3R 16003654 3` UTR srp + chr3R 16003703 3` UTR srp + chr3R 16003752 3` UTR srp + chr3R_4_16000001 chr3R_16000001 RAL-41 862 chr3R 16048854 16048870 chr3R 16048944 16048959 4 90 4.0 2.5 3.2 1.0 105 chr3R 16048854 intron ird5 - chr3R 16048906 intron ird5 - chr3R 16048959 intron ird5 - chr3R_4_16045001 chr3R_16045001 RAL-41 863 chr3R 16225088 16225117 chr3R 16225173 16225197 5 84 2.5 0.0 1.2 2.3 109 chr3R 16225088 intergenic not near genes chr3R 16225142 intergenic not near genes chr3R 16225197 intergenic tara + chr3R_5_16225001 chr3R_16225001 RAL-41 864 chr3R 16234247 16234263 chr3R 16234323 16234328 4 73 6.5 0.0 3.2 1.0 81 chr3R 16234247 intron tara + chr3R 16234288 intron tara + chr3R 16234328 intron tara + chr3R_4_16230001 chr3R_16230001 RAL-41 865 chr3R 16246542 16246551 chr3R 16246618 16246627 5 76 0.0 5.5 2.8 1.3 85 chr3R 16246542 intron tara + chr3R 16246584 intron tara + chr3R 16246627 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-41 866 chr3R 16472582 16472595 chr3R 16472656 16472668 4 75 5.0 4.0 4.5 0.7 86 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472625 5` UTR Gyc-89Da + chr3R 16472668 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-41 867 chr3R 16555331 16555356 chr3R 16555424 16555448 10 93 0.0 2.5 1.2 4.5 117 chr3R 16555331 intron CG42342 + chr3R 16555390 intron CG42342 + chr3R 16555448 intron CG42342 + chr3R_10_16555001 chr3R_16555001 RAL-41 868 chr3R 16633806 16633825 chr3R 16642387 16642406 7 8581 12.5 13.0 12.8 0.5 8600 chr3R 16633806 intron Fas1 + chr3R 16638106 intron Fas1 + chr3R 16642406 3` UTR nonA-l + chr3R_7_16635001 chr3R_16635001 RAL-41 869 chr3R 16756327 16756350 chr3R 16762515 16762541 diver 7 6190 2.0 1.5 1.8 2.5 6214 chr3R 16756327 intron bxd - chr3R 16759434 intron bxd - chr3R 16762541 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-41 870 chr3R 16816322 16816346 chr3R 16816494 16816518 5 172 1.0 1.0 1.0 2.5 196 chr3R 16816322 intron abd-A - chr3R 16816420 intron abd-A - chr3R 16816518 intron abd-A - chr3R_5_16815001 chr3R_16815001 RAL-41 871 chr3R 17320566 17320825 chr3R 17320650 17320891 6 76 0.0 5.5 2.8 1.6 325 chr3R 17320566 3` UTR beat-IIa - chr3R 17320728 3` UTR beat-IIa - chr3R 17320891 exon beat-IIa - chr3R_6_17320001 chr3R_17320001 RAL-41 872 chr3R 17346698 17346714 chr3R 17348260 17348275 F-element 6 1562 1.0 3.0 2.0 2.0 1577 chr3R 17346698 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348275 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-41 873 chr3R 17355500 17355502 chr3R 17355577 17355580 4 78 3.5 3.5 3.5 0.9 80 chr3R 17355500 intron beat-IIa - chr3R 17355540 intron beat-IIa - chr3R 17355580 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-41 874 chr3R 17497962 17497984 chr3R 17498048 17498070 4 86 1.5 2.0 1.8 1.4 108 chr3R 17497962 intron Dscam3 - chr3R 17498016 intron Dscam3 - chr3R 17498070 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-41 875 chr3R 17565613 17565632 chr3R 17565702 17565706 4 80 1.5 2.5 2.0 1.3 93 chr3R 17565613 intron Hmx + chr3R 17565660 intron Hmx + chr3R 17565706 intron Hmx + chr3R_4_17565001 chr3R_17565001 RAL-41 876 chr3R 17569984 17569987 chr3R 17570036 17570059 4 68 0.0 3.0 1.5 1.6 75 chr3R 17569984 intergenic not near genes chr3R 17570022 intergenic not near genes chr3R 17570059 intergenic not near genes chr3R_4_17570001 chr3R_17570001 RAL-41 877 chr3R 17638319 17638346 chr3R 17638805 17638832 roo 4 486 2.0 1.5 1.8 1.4 513 chr3R 17638319 intron CG43175 + chr3R 17638576 intron CG43175 + chr3R 17638832 intron,intron CG43175 +,CR45222 + chr3R_4_17635001 chr3R_17635001 RAL-41 878 chr3R 17925853 17925887 chr3R 17927319 17927354 hobo 6 1466 2.5 8.0 5.2 1.0 1501 chr3R 17925853 intron cpo + chr3R 17926604 intron cpo + chr3R 17927354 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-41 879 chr3R 18107610 18107624 chr3R 18107708 18107722 4 97 2.5 2.0 2.2 1.2 112 chr3R 18107610 intron sr + chr3R 18107666 intron sr + chr3R 18107722 intron sr + chr3R_4_18105001 chr3R_18105001 RAL-41 880 chr3R 18126211 18126230 chr3R 18126290 18126309 4 79 1.0 3.0 2.0 1.3 98 chr3R 18126211 intron sr + chr3R 18126260 intron sr + chr3R 18126309 intron sr + chr3R_4_18125001 chr3R_18125001 RAL-41 881 chr3R 18346365 18346387 chr3R 18346483 18346497 6 118 1.5 1.5 1.5 2.4 132 chr3R 18346365 intron CG15803 - chr3R 18346431 intron CG15803 - chr3R 18346497 intron CG15803 - chr3R_6_18345001 chr3R_18345001 RAL-41 882 chr3R 18352582 18352594 chr3R 18352675 18352687 7 93 1.5 2.0 1.8 2.5 105 chr3R 18352582 intron CG15803 - chr3R 18352634 intron CG15803 - chr3R 18352687 intron CG15803 - chr3R_7_18350001 chr3R_18350001 RAL-41 883 chr3R 18500318 18500347 chr3R 18500475 18500504 8 154 0.5 1.0 0.8 4.4 186 chr3R 18500318 intron fru - chr3R 18500411 intron fru - chr3R 18500504 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-41 884 chr3R 18606515 18606533 chr3R 18610746 18610764 F-element 6 4231 2.5 1.0 1.8 2.1 4249 chr3R 18606515 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610764 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-41 885 chr3R 18766779 18766807 chr3R 18766856 18766883 5 75 2.0 1.0 1.5 2.0 104 chr3R 18766779 intron CG7720 - chr3R 18766831 intron CG7720 - chr3R 18766883 intron CG7720 - chr3R_5_18765001 chr3R_18765001 RAL-41 886 chr3R 18812075 18812108 chr3R 18812153 18812185 11 77 2.0 1.0 1.5 4.4 110 chr3R 18812075 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-41 887 chr3R 18813604 18813639 chr3R 18813760 18813796 4 156 1.0 1.5 1.2 1.8 192 chr3R 18813604 intron CG18208 - chr3R 18813700 intron CG18208 - chr3R 18813796 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-41 888 chr3R 18891816 18891836 chr3R 18891895 18891919 4 82 3.5 0.5 2.0 1.3 103 chr3R 18891816 intergenic not near genes chr3R 18891868 intergenic not near genes chr3R 18891919 intergenic not near genes chr3R_4_18890001 chr3R_18890001 RAL-41 889 chr3R 19033927 19033951 chr3R 19034004 19034027 4 75 3.5 1.0 2.2 1.2 100 chr3R 19033927 intron CG6026 + chr3R 19033977 intron CG6026 + chr3R 19034027 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-41 890 chr3R 19140263 19140293 chr3R 19140711 19140741 13 447 2.0 3.5 2.8 3.4 478 chr3R 19140263 3` UTR Ppcs - chr3R 19140502 3` UTR Ppcs - chr3R 19140741 3` UTR Ppcs - chr3R_13_19140001 chr3R_19140001 RAL-41 891 chr3R 19165919 19165952 chr3R 19166029 19166062 9 110 2.5 0.5 1.5 3.6 143 chr3R 19165919 intron sqz + chr3R 19165990 intron sqz + chr3R 19166062 intron sqz + chr3R_9_19165001 chr3R_19165001 RAL-41 892 chr3R 19276930 19276943 chr3R 19277010 19277021 5 80 1.5 2.0 1.8 1.8 91 chr3R 19276930 intergenic not near genes chr3R 19276976 intergenic not near genes chr3R 19277021 intergenic not near genes chr3R_5_19275001 chr3R_19275001 RAL-41 893 chr3R 19298741 19298752 chr3R 19298842 19298853 4 101 1.0 1.5 1.2 1.8 112 chr3R 19298741 intergenic not near genes chr3R 19298797 intergenic not near genes chr3R 19298853 intergenic not near genes chr3R_4_19295001 chr3R_19295001 RAL-41 894 chr3R 19668647 19668680 chr3R 19668722 19668754 5 76 4.0 2.0 3.0 1.2 107 chr3R 19668647 exon CG7432 + chr3R 19668700 exon CG7432 + chr3R 19668754 exon CG7432 + chr3R_5_19665001 chr3R_19665001 RAL-41 895 chr3R 19702322 19702350 chr3R 19702403 19702432 5 79 2.5 0.5 1.5 2.0 110 chr3R 19702322 intergenic not near genes chr3R 19702377 intergenic not near genes chr3R 19702432 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-41 896 chr3R 19839541 19839557 chr3R 19839760 19839789 9 229 1.5 3.0 2.2 2.8 248 chr3R 19839541 intergenic not near genes chr3R 19839665 intergenic not near genes chr3R 19839789 intergenic not near genes chr3R_9_19835001 chr3R_19835001 RAL-41 897 chr3R 19955353 19955362 chr3R 19955454 19955461 4 100 3.0 1.5 2.2 1.2 108 chr3R 19955353 intron Hs6st - chr3R 19955407 intron Hs6st - chr3R 19955461 intron Hs6st - chr3R_4_19955001 chr3R_19955001 RAL-41 898 chr3R 19957270 19957300 chr3R 19957345 19957348 5 68 1.5 2.0 1.8 1.8 78 chr3R 19957270 intron Hs6st - chr3R 19957309 intron Hs6st - chr3R 19957348 intron Hs6st - chr3R_5_19955001 chr3R_19955001 RAL-41 899 chr3R 20008821 20008856 chr3R 20008902 20008934 8 77 1.0 3.5 2.2 2.5 113 chr3R 20008821 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008934 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 RAL-41 900 chr3R 20188189 20188219 chr3R 20188338 20188368 4 147 1.0 2.0 1.5 1.6 179 chr3R 20188189 intergenic not near genes chr3R 20188278 intergenic not near genes chr3R 20188368 intergenic not near genes chr3R_4_20185001 chr3R_20185001 RAL-41 901 chr3R 20209803 20209824 chr3R 20209888 20209909 7 85 0.5 0.5 0.5 4.7 106 chr3R 20209803 intron Nlg4 + chr3R 20209856 intron Nlg4 + chr3R 20209909 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-41 902 chr3R 20282291 20282302 chr3R 20282367 20282378 4 76 0.0 2.0 1.0 2.0 87 chr3R 20282291 intron cic + chr3R 20282334 intron cic + chr3R 20282378 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-41 903 chr3R 20739579 20739597 chr3R 20739697 20739715 5 118 1.5 2.0 1.8 1.8 136 chr3R 20739579 intergenic CG17267 - chr3R 20739647 intergenic CG42322 + chr3R 20739715 intergenic CG42322 + chr3R_5_20735001 chr3R_20735001 RAL-41 904 chr3R 20771704 20771731 chr3R 20771785 20771812 5 81 0.0 1.0 0.5 3.3 108 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771758 intron,intron Syp +,Takl1 - chr3R 20771812 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-41 905 chr3R 20901658 20901676 chr3R 20901760 20901779 4 102 3.5 1.0 2.2 1.2 121 chr3R 20901658 intergenic CG5621 + chr3R 20901718 intergenic CG5621 + chr3R 20901779 intergenic CG5621 + chr3R_4_20900001 chr3R_20900001 RAL-41 906 chr3R 20934824 20934842 chr3R 20934901 20934921 4 78 2.0 1.0 1.5 1.6 97 chr3R 20934824 intron CG31191 - chr3R 20934872 intron CG31191 - chr3R 20934921 intron CG31191 - chr3R_4_20930001 chr3R_20930001 RAL-41 907 chr3R 21014010 21014044 chr3R 21014088 21014122 8 77 1.5 1.0 1.2 3.6 112 chr3R 21014010 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_8_21010001 chr3R_21010001 RAL-41 908 chr3R 21108043 21108066 chr3R 21108304 21108327 4 260 1.0 0.0 0.5 2.7 284 chr3R 21108043 intergenic Sec15 -,rtet + chr3R 21108185 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-41 909 chr3R 21141681 21141699 chr3R 21150153 21150159 Tirant 6 8472 1.5 2.5 2.0 2.0 8478 chr3R 21141681 intron SNF4Agamma + chr3R 21145920 intron SNF4Agamma + chr3R 21150159 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-41 910 chr3R 21161701 21161728 chr3R 21161785 21161812 6 84 0.5 2.0 1.2 2.7 111 chr3R 21161701 intron SNF4Agamma + chr3R 21161756 intron SNF4Agamma + chr3R 21161812 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-41 911 chr3R 21240446 21240472 chr3R 21240538 21240564 4 92 0.5 1.5 1.0 2.0 118 chr3R 21240446 intergenic not near genes chr3R 21240505 intergenic not near genes chr3R 21240564 intergenic not near genes chr3R_4_21240001 chr3R_21240001 RAL-41 912 chr3R 21408586 21408607 chr3R 21408694 21408715 4 108 1.5 2.5 2.0 1.3 129 chr3R 21408586 intergenic CheB93a + chr3R 21408650 intergenic CheB93a +,CheB93b + chr3R 21408715 intergenic CheB93a +,CheB93b + chr3R_4_21405001 chr3R_21405001 RAL-41 913 chr3R 21761124 21761150 chr3R 21768516 21768528 mdg1 9 7389 1.5 2.0 1.8 3.2 7404 chr3R 21761124 exon CG42335 + chr3R 21764826 intron CG42335 + chr3R 21768528 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-41 914 chr3R 21784863 21784886 chr3R 21784961 21784979 5 97 1.5 0.0 0.8 2.8 116 chr3R 21784863 3` UTR,3` UTR CASK -,CRG - chr3R 21784921 3` UTR,3` UTR CASK -,CRG - chr3R 21784979 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-41 915 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 12.5 11.5 12.0 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-41 916 chr3R 21907534 21907534 chr3R 28831801 28831802 10 6924268 10.5 12.0 11.2 0.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-41 917 chr3R 21907535 21907535 chr3R 28831801 28831804 29 6924267 10.5 12.0 11.2 2.4 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-41 918 chr3R 21907535 21907535 chr3R 29013339 29013340 6 7105805 10.5 6.0 8.2 0.7 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-41 919 chr3R 21907536 21907536 chr3R 28831801 28831804 27 6924266 10.5 12.0 11.2 2.2 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-41 920 chr3R 21952133 21952165 chr3R 21952218 21952249 7 85 1.5 0.5 1.0 3.5 116 chr3R 21952133 intron Eip93F + chr3R 21952191 intron Eip93F + chr3R 21952249 intron Eip93F + chr3R_7_21950001 chr3R_21950001 RAL-41 921 chr3R 21968999 21969016 chr3R 21969202 21969219 4 203 0.0 2.5 1.2 1.8 220 chr3R 21968999 intron Eip93F + chr3R 21969109 intron Eip93F + chr3R 21969219 intron Eip93F + chr3R_4_21965001 chr3R_21965001 RAL-41 922 chr3R 22181233 22181253 chr3R 22181312 22181331 6 79 2.0 1.5 1.8 2.1 98 chr3R 22181233 intron SKIP + chr3R 22181282 intron SKIP + chr3R 22181331 intron SKIP + chr3R_6_22180001 chr3R_22180001 RAL-41 923 chr3R 22280947 22280966 chr3R 22281029 22281048 4 82 0.5 2.0 1.2 1.8 101 chr3R 22280947 intron SKIP + chr3R 22280998 intron SKIP + chr3R 22281048 intron SKIP + chr3R_4_22280001 chr3R_22280001 RAL-41 924 chr3R 22291489 22291500 chr3R 22291794 22291802 5 303 7.0 4.0 5.5 0.8 313 chr3R 22291489 intron SKIP + chr3R 22291646 intron SKIP + chr3R 22291802 intron SKIP + chr3R_5_22290001 chr3R_22290001 RAL-41 925 chr3R 22450548 22450579 chr3R 22453188 22453219 NOF 4 2640 2.5 1.5 2.0 1.3 2671 chr3R 22450548 intron CG34376 + chr3R 22451884 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-41 926 chr3R 22684204 22684236 chr3R 22684279 22684312 6 75 2.0 2.0 2.0 2.0 108 chr3R 22684204 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684312 intergenic not near genes chr3R_6_22680001 chr3R_22680001 RAL-41 927 chr3R 22797759 22797937 chr3R 22797845 22798033 9 91 4.5 3.5 4.0 1.8 274 chr3R 22797759 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-41 928 chr3R 22835812 22835841 chr3R 22835894 22835923 8 82 6.5 6.5 6.5 1.1 111 chr3R 22835812 intergenic not near genes chr3R 22835868 intergenic not near genes chr3R 22835923 intergenic not near genes chr3R_8_22835001 chr3R_22835001 RAL-41 929 chr3R 22840820 22840846 chr3R 22841275 22841308 5 460 2.5 4.0 3.2 1.2 488 chr3R 22840820 intergenic not near genes chr3R 22841064 intergenic not near genes chr3R 22841308 intergenic not near genes chr3R_5_22840001 chr3R_22840001 RAL-41 930 chr3R 22842389 22842420 chr3R 22842487 22842519 7 99 1.5 1.0 1.2 3.2 130 chr3R 22842389 intergenic not near genes chr3R 22842454 intergenic not near genes chr3R 22842519 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-41 931 chr3R 22860157 22860175 chr3R 22860249 22860267 4 92 0.0 1.0 0.5 2.7 110 chr3R 22860157 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860267 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-41 932 chr3R 22880950 22880960 chr3R 22881088 22881097 4 138 0.5 2.0 1.2 1.8 147 chr3R 22880950 intergenic not near genes chr3R 22881024 intergenic not near genes chr3R 22881097 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-41 933 chr3R 22953828 22953848 chr3R 22954480 22954500 6 652 6.5 4.0 5.2 1.0 672 chr3R 22953828 intron klg + chr3R 22954164 intron klg + chr3R 22954500 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-41 934 chr3R 23073652 23073688 chr3R 23073741 23073777 6 88 2.0 0.0 1.0 3.0 125 chr3R 23073652 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073777 intron CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-41 935 chr3R 23225435 23225467 chr3R 23225529 23225562 4 95 1.0 2.5 1.8 1.4 127 chr3R 23225435 intron cnc - chr3R 23225498 intron cnc - chr3R 23225562 intron cnc - chr3R_4_23225001 chr3R_23225001 RAL-41 936 chr3R 23246007 23246021 chr3R 23246088 23246099 4 80 1.5 1.5 1.5 1.6 92 chr3R 23246007 intron CG4467 - chr3R 23246053 intron CG4467 - chr3R 23246099 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-41 937 chr3R 23558402 23558421 chr3R 23560183 23560202 Bari1 4 1781 2.0 1.5 1.8 1.4 1800 chr3R 23558402 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560202 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-41 938 chr3R 23615342 23615364 chr3R 23615419 23615441 4 77 6.5 6.5 6.5 0.5 99 chr3R 23615342 intron CG31145 - chr3R 23615392 intron CG31145 - chr3R 23615441 intron CG31145 - chr3R_4_23615001 chr3R_23615001 RAL-41 939 chr3R 23684694 23684725 chr3R 23685180 23685194 roo 7 480 2.0 2.5 2.2 2.2 500 chr3R 23684694 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685194 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-41 940 chr3R 23846112 23846151 chr3R 23846197 23846236 13 84 2.5 2.5 2.5 3.7 124 chr3R 23846112 intron CG34355 + chr3R 23846174 intron CG34355 + chr3R 23846236 intron CG34355 + chr3R_13_23845001 chr3R_23845001 RAL-41 941 chr3R 23865032 23865061 chr3R 23865121 23865150 4 88 1.5 1.5 1.5 1.6 118 chr3R 23865032 intron Pli - chr3R 23865091 intron Pli - chr3R 23865150 intron Pli - chr3R_4_23865001 chr3R_23865001 RAL-41 942 chr3R 23949041 23949069 chr3R 23949118 23949146 11 77 1.5 1.0 1.2 5.0 105 chr3R 23949041 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-41 943 chr3R 24021637 24021648 chr3R 24021726 24021738 4 90 1.5 2.0 1.8 1.4 101 chr3R 24021637 intron KrT95D - chr3R 24021688 intron KrT95D - chr3R 24021738 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-41 944 chr3R 24072086 24072113 chr3R 24072523 24072551 jockey 6 436 5.0 1.0 3.0 1.5 465 chr3R 24072086 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072551 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-41 945 chr3R 24076914 24076935 chr3R 24078381 24078402 hobo 8 1466 2.0 2.5 2.2 2.5 1488 chr3R 24076914 intron 4EHP - chr3R 24077658 intron 4EHP - chr3R 24078402 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-41 946 chr3R 24093556 24093592 chr3R 24093771 24093806 14 215 1.0 1.5 1.2 6.4 250 chr3R 24093556 intron 4EHP - chr3R 24093681 intron 4EHP - chr3R 24093806 intron 4EHP - chr3R_14_24090001 chr3R_24090001 RAL-41 947 chr3R 24207212 24207236 chr3R 24212288 24212312 flea 7 5073 3.0 2.0 2.5 2.0 5100 chr3R 24207212 intron twin - chr3R 24209762 intron twin - chr3R 24212312 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-41 948 chr3R 24384063 24384079 chr3R 24384142 24384161 4 80 4.5 3.0 3.8 0.8 98 chr3R 24384063 intron CG17780 - chr3R 24384112 intron CG17780 - chr3R 24384161 exon CG17780 - chr3R_4_24380001 chr3R_24380001 RAL-41 949 chr3R 24785084 24785106 chr3R 24785160 24785177 6 74 3.5 2.0 2.8 1.6 93 chr3R 24785084 3` UTR CG5805 - chr3R 24785130 3` UTR CG5805 - chr3R 24785177 3` UTR CG5805 - chr3R_6_24785001 chr3R_24785001 RAL-41 950 chr3R 24927133 24927155 chr3R 24931922 24931945 Doc 4 4790 3.0 3.5 3.2 1.0 4812 chr3R 24927133 intergenic Trf4-2 + chr3R 24929539 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-41 951 chr3R 25296168 25296194 chr3R 25296248 25296275 7 81 3.0 2.5 2.8 1.8 107 chr3R 25296168 3` UTR CG31097 - chr3R 25296222 3` UTR CG31097 - chr3R 25296275 3` UTR CG31097 - chr3R_7_25295001 chr3R_25295001 RAL-41 952 chr3R 25524605 25524618 chr3R 25524689 25524703 5 85 2.0 2.0 2.0 1.7 98 chr3R 25524605 intron msi + chr3R 25524654 intron msi + chr3R 25524703 intron msi + chr3R_5_25520001 chr3R_25520001 RAL-41 953 chr3R 25669064 25669094 chr3R 25669157 25669188 6 90 2.0 5.0 3.5 1.3 124 chr3R 25669064 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669188 intron Lgr3 + chr3R_6_25665001 chr3R_25665001 RAL-41 954 chr3R 25689126 25689163 chr3R 25689234 25689271 6 108 2.0 4.5 3.2 1.4 145 chr3R 25689126 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-41 955 chr3R 25832695 25832724 chr3R 25841877 25841906 roo 8 9182 3.0 4.5 3.8 1.7 9211 chr3R 25832695 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-41 956 chr3R 25962052 25962079 chr3R 25962148 25962175 7 95 2.0 2.0 2.0 2.3 123 chr3R 25962052 intron boss + chr3R 25962114 intron boss + chr3R 25962175 intron boss + chr3R_7_25960001 chr3R_25960001 RAL-41 957 chr3R 26013856 26013862 chr3R 26013932 26013940 4 78 4.5 2.0 3.2 1.0 84 chr3R 26013856 intergenic not near genes chr3R 26013898 intergenic not near genes chr3R 26013940 intergenic not near genes chr3R_4_26010001 chr3R_26010001 RAL-41 958 chr3R 26122471 26122476 chr3R 26122537 26122552 4 73 1.5 2.5 2.0 1.3 81 chr3R 26122471 intron CG31324 + chr3R 26122512 intron CG31324 + chr3R 26122552 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-41 959 chr3R 26144446 26144482 chr3R 26144524 26144560 4 78 0.5 0.0 0.2 3.3 114 chr3R 26144446 intergenic not near genes chr3R 26144503 intergenic not near genes chr3R 26144560 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-41 960 chr3R 26409050 26409078 chr3R 26409141 26409169 4 90 0.0 1.0 0.5 2.7 119 chr3R 26409050 intergenic not near genes chr3R 26409110 intergenic not near genes chr3R 26409169 intergenic not near genes chr3R_4_26405001 chr3R_26405001 RAL-41 961 chr3R 26641643 26641664 chr3R 26641729 26641751 4 85 3.0 1.0 2.0 1.3 108 chr3R 26641643 intergenic not near genes chr3R 26641697 intergenic not near genes chr3R 26641751 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-41 962 chr3R 26728484 26728511 chr3R 26728568 26728597 8 81 0.5 3.0 1.8 2.9 113 chr3R 26728484 intron CG14246 + chr3R 26728540 intron CG14246 + chr3R 26728597 intron CG14246 + chr3R_8_26725001 chr3R_26725001 RAL-41 963 chr3R 26740306 26740321 chr3R 26740382 26740397 5 76 0.5 4.5 2.5 1.4 91 chr3R 26740306 intergenic not near genes chr3R 26740352 intergenic not near genes chr3R 26740397 intergenic not near genes chr3R_5_26740001 chr3R_26740001 RAL-41 964 chr3R 26767371 26767388 chr3R 26767449 26767459 7 76 2.0 3.0 2.5 2.0 88 chr3R 26767371 intergenic not near genes chr3R 26767415 intergenic not near genes chr3R 26767459 intergenic not near genes chr3R_7_26765001 chr3R_26765001 RAL-41 965 chr3R 27028721 27028738 chr3R 27028800 27028817 4 79 3.5 1.0 2.2 1.2 96 chr3R 27028721 intron RYa-R + chr3R 27028769 intron RYa-R + chr3R 27028817 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-41 966 chr3R 27140521 27140546 chr3R 27148130 27148156 412 11 7610 2.5 2.0 2.2 3.4 7635 chr3R 27140521 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-41 967 chr3R 27195577 27195604 chr3R 27195663 27195674 6 83 3.5 1.5 2.5 1.7 97 chr3R 27195577 intergenic not near genes chr3R 27195626 intergenic not near genes chr3R 27195674 intergenic not near genes chr3R_6_27195001 chr3R_27195001 RAL-41 968 chr3R 27342796 27342826 chr3R 27351377 27351404 Tirant 5 8579 1.0 0.5 0.8 2.8 8608 chr3R 27342796 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351404 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-41 969 chr3R 27445249 27445279 chr3R 27445325 27445356 8 74 1.5 2.0 1.8 2.9 107 chr3R 27445249 intergenic not near genes chr3R 27445302 intergenic not near genes chr3R 27445356 intergenic not near genes chr3R_8_27445001 chr3R_27445001 RAL-41 970 chr3R 27492383 27492404 chr3R 27492469 27492491 4 87 1.0 1.0 1.0 2.0 108 chr3R 27492383 intergenic not near genes chr3R 27492437 intergenic not near genes chr3R 27492491 intergenic not near genes chr3R_4_27490001 chr3R_27490001 RAL-41 971 chr3R 27578480 27578512 chr3R 27578570 27578602 8 88 4.5 2.0 3.2 1.9 122 chr3R 27578480 intron wdb - chr3R 27578541 intron wdb - chr3R 27578602 intron wdb - chr3R_8_27575001 chr3R_27575001 RAL-41 972 chr3R 27659564 27659590 chr3R 27659648 27659666 8 82 3.0 1.0 2.0 2.7 102 chr3R 27659564 intron Mlc1 - chr3R 27659615 intron Mlc1 - chr3R 27659666 intron Mlc1 - chr3R_8_27655001 chr3R_27655001 RAL-41 973 chr3R 27705359 27705392 chr3R 27705439 27705471 8 78 1.0 3.5 2.2 2.5 112 chr3R 27705359 exon CG12428 - chr3R 27705415 intron CG12428 - chr3R 27705471 exon CG12428 - chr3R_8_27705001 chr3R_27705001 RAL-41 974 chr3R 27718577 27718587 chr3R 27718656 27718666 4 79 4.0 1.0 2.5 1.1 89 chr3R 27718577 intergenic not near genes chr3R 27718622 intergenic not near genes chr3R 27718666 intergenic not near genes chr3R_4_27715001 chr3R_27715001 RAL-41 975 chr3R 27779269 27779285 chr3R 27779349 27779365 7 79 4.0 7.0 5.5 1.1 96 chr3R 27779269 exon CG34353 - chr3R 27779317 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-41 976 chr3R 27799936 27799961 chr3R 27800018 27800042 8 82 2.0 1.5 1.8 2.9 106 chr3R 27799936 intron CG34353 - chr3R 27799989 intron CG34353 - chr3R 27800042 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-41 977 chr3R 27856757 27856793 chr3R 27858240 27858276 hopper2 13 1482 0.0 1.5 0.8 7.2 1519 chr3R 27856757 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_13_27855001 chr3R_27855001 RAL-41 978 chr3R 27862954 27862981 chr3R 27868259 27868277 Transpac 5 5303 1.5 1.5 1.5 2.0 5323 chr3R 27862954 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868277 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-41 979 chr3R 27954662 27954684 chr3R 27954746 27954768 7 84 3.5 1.5 2.5 2.0 106 chr3R 27954662 intergenic CG5527 + chr3R 27954715 intergenic CG5527 + chr3R 27954768 intergenic CG5527 + chr3R_7_27950001 chr3R_27950001 RAL-41 980 chr3R 28068505 28068526 chr3R 28073947 28073967 I-element 5 5442 0.5 2.5 1.5 2.0 5462 chr3R 28068505 intron CG34362 + chr3R 28071236 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-41 981 chr3R 28103329 28103359 chr3R 28103421 28103452 6 92 2.0 1.5 1.8 2.1 123 chr3R 28103329 intergenic not near genes chr3R 28103390 intergenic not near genes chr3R 28103452 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-41 982 chr3R 28173673 28173704 chr3R 28181103 28181134 mdg1 5 7430 4.0 2.0 3.0 1.2 7461 chr3R 28173673 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-41 983 chr3R 28302106 28302129 chr3R 28302545 28302568 jockey 5 438 2.5 2.0 2.2 1.6 462 chr3R 28302106 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302568 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-41 984 chr3R 28307306 28307326 chr3R 28307507 28307527 10 201 1.0 5.0 3.0 2.5 221 chr3R 28307306 intergenic not near genes chr3R 28307416 intergenic not near genes chr3R 28307527 intergenic not near genes chr3R_10_28305001 chr3R_28305001 RAL-41 985 chr3R 28308074 28308080 chr3R 28308149 28308156 4 76 4.0 2.5 3.2 1.0 82 chr3R 28308074 intergenic not near genes chr3R 28308115 intergenic not near genes chr3R 28308156 intergenic not near genes chr3R_4_28305001 chr3R_28305001 RAL-41 986 chr3R 28352515 28352544 chr3R 28352854 28352884 12 340 3.0 1.5 2.2 3.8 369 chr3R 28352515 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352884 exon Or98b + chr3R_12_28350001 chr3R_28350001 RAL-41 987 chr3R 28407709 28407742 chr3R 28407795 28407824 11 83 2.5 2.0 2.2 3.4 115 chr3R 28407709 intergenic not near genes chr3R 28407766 intergenic not near genes chr3R 28407824 intergenic not near genes chr3R_11_28405001 chr3R_28405001 RAL-41 988 chr3R 28484355 28484375 chr3R 28486272 28486292 11 1917 19.0 22.5 20.8 0.5 1937 chr3R 28484355 intergenic CG1894 + chr3R 28485324 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_11_28485001 chr3R_28485001 RAL-41 989 chr3R 28601550 28601561 chr3R 28601649 28601659 4 100 3.0 3.0 3.0 1.0 109 chr3R 28601550 intron,5` UTR Hrb98DE +,snoRNA:Psi28S-3405a + chr3R 28601604 intron,5` UTR Hrb98DE +,snoRNA:Psi28S-3405a + chr3R 28601659 intron,5` UTR Hrb98DE +,snoRNA:Psi28S-3405a + chr3R_4_28600001 chr3R_28600001 RAL-41 990 chr3R 28616479 28616503 chr3R 28616573 28616587 6 92 1.0 2.0 1.5 2.4 108 chr3R 28616479 intron CG10011 - chr3R 28616533 intron CG10011 - chr3R 28616587 intron CG10011 - chr3R_6_28615001 chr3R_28615001 RAL-41 991 chr3R 28686727 28686749 chr3R 28686809 28686831 5 82 3.5 2.0 2.8 1.3 104 chr3R 28686727 intron CG9990 + chr3R 28686779 intron CG9990 + chr3R 28686831 intron CG9990 + chr3R_5_28685001 chr3R_28685001 RAL-41 992 chr3R 28698384 28698395 chr3R 28698766 28698777 6 382 1.5 3.0 2.2 1.9 393 chr3R 28698384 intron htt + chr3R 28698580 intron htt + chr3R 28698777 intron htt + chr3R_6_28695001 chr3R_28695001 RAL-41 993 chr3R 21907534 21907536 chr3R 28831801 28831802 43 6924266 10.5 12.0 11.2 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-41 994 chr3R 21907534 21907534 chr3R 29013340 29013340 4 7105806 10.5 6.5 8.5 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-41 995 chr3R 29079387 29079398 chr3R 29080759 29080770 NOF 4 1372 2.0 1.0 1.5 1.6 1383 chr3R 29079387 intron CG11873 + chr3R 29080078 intron CG11873 + chr3R 29080770 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-41 996 chr3R 29164597 29164627 chr3R 29164672 29164705 5 78 1.5 3.5 2.5 1.4 108 chr3R 29164597 3` UTR CG11897 + chr3R 29164651 3` UTR CG11897 + chr3R 29164705 3` UTR CG11897 + chr3R_5_29160001 chr3R_29160001 RAL-41 997 chr3R 29213061 29213076 chr3R 29213144 29213159 6 83 3.5 3.5 3.5 1.3 98 chr3R 29213061 intergenic not near genes chr3R 29213110 intergenic not near genes chr3R 29213159 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-41 998 chr3R 29237253 29237281 chr3R 29239274 29239302 12 2018 10.5 5.0 7.8 1.4 2049 chr3R 29237253 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_12_29235001 chr3R_29235001 RAL-41 999 chr3R 29264190 29264211 chr3R 29264291 29264296 7 98 0.0 1.0 0.5 4.7 106 chr3R 29264190 intergenic not near genes chr3R 29264243 intergenic not near genes chr3R 29264296 intergenic not near genes chr3R_7_29260001 chr3R_29260001 RAL-41 1000 chr3R 29351733 29351754 chr3R 29351818 29351839 5 82 1.0 3.5 2.2 1.6 106 chr3R 29351733 intergenic not near genes chr3R 29351786 intergenic not near genes chr3R 29351839 intergenic not near genes chr3R_5_29350001 chr3R_29350001 RAL-41 1001 chr3R 29365389 29365393 chr3R 29365471 29365475 4 82 2.5 0.5 1.5 1.6 86 chr3R 29365389 intergenic not near genes chr3R 29365432 intergenic not near genes chr3R 29365475 intergenic not near genes chr3R_4_29365001 chr3R_29365001 RAL-41 1002 chr3R 29406627 29406636 chr3R 29407905 29407906 jockey 5 1280 5.0 3.5 4.2 1.0 1279 chr3R 29406627 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407906 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-41 1003 chr3R 29472010 29472035 chr3R 29472103 29472127 4 92 1.0 2.5 1.8 1.4 117 chr3R 29472010 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-41 1004 chr3R 29539436 29539456 chr3R 29539511 29539531 4 75 1.5 0.0 0.8 2.2 95 chr3R 29539436 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539531 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-41 1005 chr3R 29590376 29590392 chr3R 29590469 29590485 9 93 2.5 1.5 2.0 3.0 109 chr3R 29590376 intron CG31041 - chr3R 29590430 intron CG31041 - chr3R 29590485 intron CG31041 - chr3R_9_29590001 chr3R_29590001 RAL-41 1006 chr3R 29642516 29642533 chr3R 29642592 29642604 4 75 2.0 2.5 2.2 1.2 88 chr3R 29642516 intron Dop1R2 - chr3R 29642560 intron Dop1R2 - chr3R 29642604 intron Dop1R2 - chr3R_4_29640001 chr3R_29640001 RAL-41 1007 chr3R 29718146 29718179 chr3R 29718222 29718255 5 75 2.0 1.0 1.5 2.0 109 chr3R 29718146 intergenic not near genes chr3R 29718200 intergenic CG15506 + chr3R 29718255 intergenic CG15506 + chr3R_5_29715001 chr3R_29715001 RAL-41 1008 chr3R 29738264 29738298 chr3R 29739731 29739754 hobo 8 1463 1.0 2.5 1.8 2.9 1490 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739009 intron CG1969 + chr3R 29739754 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-41 1009 chr3R 29831809 29831843 chr3R 29831894 29831926 8 83 2.0 2.0 2.0 2.7 117 chr3R 29831809 exon Atg16 - chr3R 29831868 intron Atg16 - chr3R 29831926 exon Atg16 - chr3R_8_29830001 chr3R_29830001 RAL-41 1010 chr3R 29882018 29882053 chr3R 29891175 29891210 roo 7 9156 3.5 2.0 2.8 1.8 9192 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-41 1011 chr3R 29950575 29950598 chr3R 29950652 29950674 5 76 2.0 1.0 1.5 2.0 99 chr3R 29950575 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-41 1012 chr3R 29968763 29968792 chr3R 29968943 29968976 5 183 2.0 1.5 1.8 1.8 213 chr3R 29968763 intron TkR99D - chr3R 29968870 intron TkR99D - chr3R 29968976 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-41 1013 chr3R 29979723 29979742 chr3R 29979851 29979852 7 125 2.5 3.0 2.8 1.8 129 chr3R 29979723 intergenic not near genes chr3R 29979788 intergenic not near genes chr3R 29979852 intergenic not near genes chr3R_7_29975001 chr3R_29975001 RAL-41 1014 chr3R 30060415 30060436 chr3R 30060492 30060514 10 77 1.5 0.0 0.8 5.6 99 chr3R 30060415 intron sima + chr3R 30060464 intron sima + chr3R 30060514 intron sima + chr3R_10_30060001 chr3R_30060001 RAL-41 1015 chr3R 30224660 30224673 chr3R 30224738 30224751 4 78 1.0 3.0 2.0 1.3 91 chr3R 30224660 intergenic not near genes chr3R 30224706 intergenic not near genes chr3R 30224751 intergenic not near genes chr3R_4_30220001 chr3R_30220001 RAL-41 1016 chr3R 30238774 30238791 chr3R 30239935 30239956 1360 4 1164 0.0 0.0 0.0 4.0 1182 chr3R 30238774 intergenic not near genes chr3R 30239365 intergenic not near genes chr3R 30239956 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-41 1017 chr3R 30332037 30332061 chr3R 30332113 30332140 5 78 1.0 1.5 1.2 2.3 103 chr3R 30332037 intron hdc + chr3R 30332088 intron hdc + chr3R 30332140 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-41 1018 chr3R 30375548 30375567 chr3R 30383171 30383190 412 4 7623 2.0 2.5 2.2 1.2 7642 chr3R 30375548 intergenic not near genes chr3R 30379369 intergenic not near genes chr3R 30383190 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-41 1019 chr3R 30461503 30461520 chr3R 30461616 30461637 5 116 1.0 3.5 2.2 1.6 134 chr3R 30461503 intron CDase + chr3R 30461570 intron CDase + chr3R 30461637 intron CDase + chr3R_5_30460001 chr3R_30460001 RAL-41 1020 chr3R 30549013 30549037 chr3R 30549104 30549129 5 90 0.5 2.0 1.2 2.3 116 chr3R 30549013 intron tmod + chr3R 30549071 intron tmod + chr3R 30549129 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-41 1021 chr3R 30589525 30589553 chr3R 30589761 30589779 4 234 0.5 0.0 0.2 3.3 254 chr3R 30589525 intergenic not near genes chr3R 30589652 intergenic not near genes chr3R 30589779 intergenic not near genes chr3R_4_30585001 chr3R_30585001 RAL-41 1022 chr3R 30591328 30591338 chr3R 30591430 30591440 4 102 0.0 1.5 0.8 2.2 112 chr3R 30591328 intergenic not near genes chr3R 30591384 intergenic not near genes chr3R 30591440 intergenic not near genes chr3R_4_30590001 chr3R_30590001 RAL-41 1023 chr3R 30627605 30627633 chr3R 30627683 30627712 9 79 3.5 2.0 2.8 2.4 107 chr3R 30627605 exon CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-41 1024 chr3R 30679518 30679547 chr3R 30686987 30687016 blood 5 7469 1.0 2.0 1.5 2.0 7498 chr3R 30679518 intergenic not near genes chr3R 30683267 intergenic not near genes chr3R 30687016 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-41 1025 chr3R 30818812 30818830 chr3R 30820374 30820395 1360 4 1564 3.5 0.0 1.8 1.4 1583 chr3R 30818812 intron cindr + chr3R 30819604 intron cindr + chr3R 30820395 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-41 1026 chr3R 30900547 30900559 chr3R 30901681 30901693 4 1134 4.0 0.5 2.2 1.2 1146 chr3R 30900547 3` UTR Cyp4c3 + chr3R 30901120 intron CG33483 - chr3R 30901693 intron CG33483 - chr3R_4_30900001 chr3R_30900001 RAL-41 1027 chr3R 31010784 31010811 chr3R 31010913 31010933 6 127 1.0 3.5 2.2 1.9 149 chr3R 31010784 intron 5-HT7 - chr3R 31010858 intron 5-HT7 - chr3R 31010933 intron 5-HT7 - chr3R_6_31010001 chr3R_31010001 RAL-41 1028 chr3R 31042115 31042141 chr3R 31042202 31042228 6 87 0.5 5.0 2.8 1.6 113 chr3R 31042115 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042228 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-41 1029 chr3R 31074238 31074262 chr3R 31081836 31081860 springer 6 7598 4.5 2.5 3.5 1.3 7622 chr3R 31074238 intron Sox100B + chr3R 31078049 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-41 1030 chr3R 31279389 31279409 chr3R 31285564 31285589 diver 6 6182 1.5 2.5 2.0 2.0 6200 chr3R 31279389 intergenic not near genes chr3R 31282489 intergenic not near genes chr3R 31285589 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-41 1031 chr3R 31313864 31313889 chr3R 31313958 31313983 4 91 0.5 0.0 0.2 3.3 119 chr3R 31313864 intron CG34347 + chr3R 31313924 intron CG34347 + chr3R 31313983 intron CG34347 + chr3R_4_31310001 chr3R_31310001 RAL-41 1032 chr3R 31346729 31346743 chr3R 31346808 31346822 5 79 4.0 3.5 3.8 1.0 93 chr3R 31346729 intron CG34347 + chr3R 31346776 intron CG34347 + chr3R 31346822 intron CG34347 + chr3R_5_31345001 chr3R_31345001 RAL-41 1033 chr3R 31413109 31413119 chr3R 31418309 31418319 copia 4 5198 2.5 1.5 2.0 1.3 5210 chr3R 31413109 intron Gprk2 + chr3R 31415714 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-41 1034 chr3R 31426889 31426912 chr3R 31426981 31427004 6 92 1.0 1.5 1.2 2.7 115 chr3R 31426889 intron Gprk2 + chr3R 31426946 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-41 1035 chr3R 31450776 31450793 chr3R 31450942 31450959 4 166 18.5 11.5 15.0 0.2 183 chr3R 31450776 intron Gprk2 + chr3R 31450868 intron Gprk2 + chr3R 31450959 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-41 1036 chr3R 31530822 31530847 chr3R 31531149 31531174 4 326 2.0 2.0 2.0 1.3 352 chr3R 31530822 intergenic not near genes chr3R 31530998 intergenic not near genes chr3R 31531174 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-41 1037 chr3R 31610122 31610138 chr3R 31610208 31610224 5 85 1.0 2.5 1.8 1.8 102 chr3R 31610122 intron CycG - chr3R 31610173 intron CycG - chr3R 31610224 intron CycG - chr3R_5_31610001 chr3R_31610001 RAL-41 1038 chr3R 31691533 31691539 chr3R 31696298 31696305 Doc 4 4766 4.5 4.5 4.5 0.7 4772 chr3R 31691533 intergenic not near genes chr3R 31693919 intergenic not near genes chr3R 31696305 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-41 1039 chr3R 31691542 31691557 chr3R 31696296 31696302 Doc 7 4760 3.0 4.0 3.5 1.6 4760 chr3R 31691542 intergenic not near genes chr3R 31693922 intergenic not near genes chr3R 31696302 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-41 1040 chr3R 31829384 31829412 chr3R 31829452 31829487 11 70 1.5 1.5 1.5 4.4 103 chr3R 31829384 intron RhoGAP100F + chr3R 31829436 intron RhoGAP100F + chr3R 31829487 intron RhoGAP100F + chr3R_11_31825001 chr3R_31825001 RAL-41 1041 chr3R 31874848 31874872 chr3R 31874922 31874948 5 76 1.0 2.5 1.8 1.8 100 chr3R 31874848 intron heph - chr3R 31874898 intron heph - chr3R 31874948 intron heph - chr3R_5_31870001 chr3R_31870001 RAL-41 1042 chr3R 31885676 31885703 chr3R 31885753 31885779 7 77 1.5 3.0 2.2 2.2 103 chr3R 31885676 intron heph - chr3R 31885728 intron heph - chr3R 31885779 intron heph - chr3R_7_31885001 chr3R_31885001 RAL-41 1043 chr3R 31974192 31974216 chr3R 31974278 31974300 5 85 0.5 1.0 0.8 2.8 108 chr3R 31974192 intron heph - chr3R 31974246 intron heph - chr3R 31974300 intron heph - chr3R_5_31970001 chr3R_31970001 RAL-41 1044 chrX 551426 551453 chrX 558982 559006 412 6 7559 1.5 2.0 1.8 2.1 7580 chrX 551426 intron Appl + chrX 555216 intron Appl + chrX 559006 intron Appl + chrX_6_555001 chrX_555001 RAL-41 1045 chrX 667649 667672 chrX 667733 667756 4 84 3.0 1.0 2.0 1.3 107 chrX 667649 intergenic not near genes chrX 667702 intergenic not near genes chrX 667756 intergenic not near genes chrX_4_665001 chrX_665001 RAL-41 1046 chrX 670263 670295 chrX 670343 670374 5 79 0.0 0.5 0.2 4.2 111 chrX 670263 intergenic not near genes chrX 670318 intergenic not near genes chrX 670374 intergenic not near genes chrX_5_670001 chrX_670001 RAL-41 1047 chrX 706804 706828 chrX 707168 707192 8 364 0.5 2.5 1.5 3.2 388 chrX 706804 intron sdk + chrX 706998 intron sdk + chrX 707192 intron sdk + chrX_8_705001 chrX_705001 RAL-41 1048 chrX 718330 718352 chrX 718410 718431 4 79 1.0 0.5 0.8 2.2 101 chrX 718330 intron sdk + chrX 718380 intron sdk + chrX 718431 intron sdk + chrX_4_715001 chrX_715001 RAL-41 1049 chrX 778130 778155 chrX 778220 778244 5 89 0.5 0.0 0.2 4.2 114 chrX 778130 intron fz3 + chrX 778187 intron fz3 + chrX 778244 intron fz3 + chrX_5_775001 chrX_775001 RAL-41 1050 chrX 882237 882257 chrX 882324 882344 5 87 0.5 1.5 1.0 2.5 107 chrX 882237 intron CG43867 - chrX 882290 intron CG43867 - chrX 882344 intron CG43867 - chrX_5_880001 chrX_880001 RAL-41 1051 chrX 1191950 1191975 chrX 1192026 1192044 10 74 3.5 1.5 2.5 2.9 94 chrX 1191950 intron CG11380 + chrX 1191997 intron CG11380 + chrX 1192044 intron CG11380 + chrX_10_1190001 chrX_1190001 RAL-41 1052 chrX 1253741 1253763 chrX 1253821 1253845 6 82 1.5 1.0 1.2 2.7 104 chrX 1253741 intron Atf3 - chrX 1253793 intron Atf3 - chrX 1253845 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-41 1053 chrX 1518049 1518064 chrX 1523449 1523451 jockey 4 5398 4.5 2.5 3.5 0.9 5402 chrX 1518049 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523451 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-41 1054 chrX 1627975 1628003 chrX 1635443 1635456 gtwin 6 7465 3.0 3.5 3.2 1.4 7481 chrX 1627975 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635456 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-41 1055 chrX 1753137 1753168 chrX 1753215 1753240 4 76 1.0 1.0 1.0 2.0 103 chrX 1753137 intron Scgdelta - chrX 1753188 intron Scgdelta - chrX 1753240 intron Scgdelta - chrX_4_1750001 chrX_1750001 RAL-41 1056 chrX 1954885 1954894 chrX 1962825 1962832 Stalker2 4 7940 4.0 1.0 2.5 1.1 7947 chrX 1954885 intron Hr4 + chrX 1958858 intron Hr4 + chrX 1962832 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-41 1057 chrX 2146654 2146683 chrX 2146746 2146775 5 91 2.0 3.5 2.8 1.3 121 chrX 2146654 intron Pgd + chrX 2146714 intron Pgd + chrX 2146775 intron Pgd + chrX_5_2145001 chrX_2145001 RAL-41 1058 chrX 2568203 2568224 chrX 2568451 2568470 8 247 1.0 2.5 1.8 2.9 267 chrX 2568203 intron Pdfr + chrX 2568336 intron Pdfr + chrX 2568470 intron Pdfr + chrX_8_2565001 chrX_2565001 RAL-41 1059 chrX 2578807 2578832 chrX 2578899 2578924 6 90 1.0 0.0 0.5 4.0 117 chrX 2578807 intergenic Pdfr +,Vha36-3 - chrX 2578866 intergenic Vha36-3 -,Pdfr + chrX 2578924 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-41 1060 chrX 2888112 2888142 chrX 2888190 2888220 7 77 1.5 3.0 2.2 2.2 108 chrX 2888112 intron kirre + chrX 2888166 intron kirre + chrX 2888220 intron kirre + chrX_7_2885001 chrX_2885001 RAL-41 1061 chrX 2932239 2932249 chrX 2932322 2932328 5 81 1.5 1.0 1.2 2.3 89 chrX 2932239 intron,exon kirre +,CG32793 + chrX 2932284 intron,exon kirre +,CG32793 + chrX 2932328 intron,exon kirre +,CG32793 + chrX_5_2930001 chrX_2930001 RAL-41 1062 chrX 3595019 3595044 chrX 3595097 3595122 4 78 0.0 1.5 0.8 2.2 103 chrX 3595019 intron AstA-R1 + chrX 3595070 intron AstA-R1 + chrX 3595122 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-41 1063 chrX 3597553 3597576 chrX 3619720 3619744 roo 7 22168 4.5 0.5 2.5 2.0 22191 chrX 3597553 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-41 1064 chrX 3630548 3630571 chrX 3630624 3630647 6 75 1.0 1.0 1.0 3.0 99 chrX 3630548 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630647 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-41 1065 chrX 3657412 3657439 chrX 3657492 3657514 4 77 2.0 2.5 2.2 1.2 102 chrX 3657412 intron AstA-R1 + chrX 3657463 intron AstA-R1 + chrX 3657514 intron AstA-R1 + chrX_4_3655001 chrX_3655001 RAL-41 1066 chrX 3726786 3726795 chrX 3730183 3730192 NOF 4 3396 2.0 1.5 1.8 1.4 3406 chrX 3726786 intron tlk + chrX 3728489 intron tlk + chrX 3730192 intron tlk + chrX_4_3725001 chrX_3725001 RAL-41 1067 chrX 4157904 4157918 chrX 4164957 4164971 297 4 7053 2.0 1.5 1.8 1.4 7067 chrX 4157904 intron Fas2 - chrX 4161438 intron Fas2 - chrX 4164971 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-41 1068 chrX 4396983 4397007 chrX 4397062 4397091 5 81 0.5 1.5 1.0 2.5 108 chrX 4396983 intron CR32773 - chrX 4397037 intron CR32773 - chrX 4397091 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-41 1069 chrX 4613543 4613558 chrX 4613633 4613648 7 89 4.0 2.0 3.0 1.8 105 chrX 4613543 intergenic not near genes chrX 4613596 intergenic not near genes chrX 4613648 intergenic not near genes chrX_7_4610001 chrX_4610001 RAL-41 1070 chrX 4763251 4763280 chrX 4763739 4763768 Stalker4 4 488 1.0 0.0 0.5 2.7 517 chrX 4763251 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763768 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-41 1071 chrX 4792397 4792408 chrX 4792830 4792841 jockey 6 432 0.5 4.0 2.2 1.9 444 chrX 4792397 intergenic not near genes chrX 4792619 intergenic not near genes chrX 4792841 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-41 1072 chrX 4963253 4963263 chrX 4963940 4963959 5 693 1.0 1.0 1.0 2.5 706 chrX 4963253 intron CR44833 - chrX 4963606 intron CR44833 - chrX 4963959 intron CR44833 - chrX_5_4960001 chrX_4960001 RAL-41 1073 chrX 5096279 5096306 chrX 5103844 5103854 springer 4 7560 0.0 2.5 1.2 1.8 7575 chrX 5096279 intron,intron CG15465 +,rg + chrX 5100066 intron,intron CG15465 +,rg + chrX 5103854 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-41 1074 chrX 6013550 6013571 chrX 6013749 6013771 10 200 9.5 11.0 10.2 0.9 221 chrX 6013550 intergenic CR44499 +,mab-21 - chrX 6013660 intergenic CR44499 +,mab-21 - chrX 6013771 5` UTR CR44499 + chrX_10_6010001 chrX_6010001 RAL-41 1075 chrX 6118698 6118733 chrX 6118780 6118815 6 82 3.0 3.5 3.2 1.4 117 chrX 6118698 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118815 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-41 1076 chrX 6215340 6215368 chrX 6215423 6215451 13 83 0.5 2.0 1.2 5.9 111 chrX 6215340 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215451 intergenic not near genes chrX_13_6215001 chrX_6215001 RAL-41 1077 chrX 6306557 6306573 chrX 6306634 6306650 4 77 2.0 2.5 2.2 1.2 93 chrX 6306557 3` UTR CG3823 + chrX 6306604 3` UTR CG3823 + chrX 6306650 3` UTR CG3823 + chrX_4_6305001 chrX_6305001 RAL-41 1078 chrX 6335220 6335244 chrX 6337730 6337754 Tirant 7 2509 0.5 1.5 1.0 3.5 2534 chrX 6335220 intergenic not near genes chrX 6336487 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-41 1079 chrX 6413544 6413567 chrX 6413970 6414001 10 431 2.5 3.0 2.8 2.6 457 chrX 6413544 intergenic not near genes chrX 6413772 intergenic not near genes chrX 6414001 intergenic not near genes chrX_10_6410001 chrX_6410001 RAL-41 1080 chrX 6562821 6562845 chrX 6571303 6571327 Tirant 4 8482 2.0 4.0 3.0 1.0 8506 chrX 6562821 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571327 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-41 1081 chrX 6737523 6737535 chrX 6737605 6737617 4 82 2.5 1.0 1.8 1.4 94 chrX 6737523 intron CG3168 - chrX 6737570 intron CG3168 - chrX 6737617 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-41 1082 chrX 6997921 6997942 chrX 6998009 6998026 6 87 2.0 0.5 1.2 2.7 105 chrX 6997921 intron Inx7 - chrX 6997974 intron Inx7 - chrX 6998026 intron Inx7 - chrX_6_6995001 chrX_6995001 RAL-41 1083 chrX 7023602 7023632 chrX 7030991 7031022 Tabor 7 7390 1.5 1.5 1.5 2.8 7420 chrX 7023602 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031022 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-41 1084 chrX 7048627 7048656 chrX 7048705 7048733 5 77 1.0 0.0 0.5 3.3 106 chrX 7048627 intron CG12541 - chrX 7048680 intron CG12541 - chrX 7048733 intron CG12541 - chrX_5_7045001 chrX_7045001 RAL-41 1085 chrX 7125244 7125275 chrX 7134403 7134432 roo 5 9158 0.5 3.0 1.8 1.8 9188 chrX 7125244 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134432 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-41 1086 chrX 7345199 7345214 chrX 7345290 7345306 4 92 0.5 0.0 0.2 3.3 107 chrX 7345199 intron,intron CR44357 -,CG1677 - chrX 7345252 intron,intron CR44357 -,CG1677 - chrX 7345306 intron,intron CR44357 -,CG1677 - chrX_4_7345001 chrX_7345001 RAL-41 1087 chrX 7702912 7702929 chrX 7703351 7703368 jockey 4 438 1.5 2.0 1.8 1.4 456 chrX 7702912 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703368 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-41 1088 chrX 7960885 7960902 chrX 7960974 7960991 6 88 0.5 3.5 2.0 2.0 106 chrX 7960885 intron,5` UTR sws -,CR45620 + chrX 7960938 intron sws - chrX 7960991 intron sws - chrX_6_7960001 chrX_7960001 RAL-41 1089 chrX 8085574 8085598 chrX 8085660 8085684 5 86 1.0 1.0 1.0 2.5 110 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085684 intron,5` UTR CG2256 -,CR45535 + chrX_5_8085001 chrX_8085001 RAL-41 1090 chrX 8364851 8364878 chrX 8365241 8365274 BS 5 395 0.5 0.0 0.2 4.2 423 chrX 8364851 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365274 intron nAChRalpha3 - chrX_5_8365001 chrX_8365001 RAL-41 1091 chrX 8416019 8416049 chrX 8416133 8416162 4 114 1.5 1.5 1.5 1.6 143 chrX 8416019 intron Trf2 + chrX 8416090 intron Trf2 + chrX 8416162 intron Trf2 + chrX_4_8415001 chrX_8415001 RAL-41 1092 chrX 8506026 8506060 chrX 8506104 8506137 4 78 0.5 1.0 0.8 2.2 111 chrX 8506026 intron CG33181 + chrX 8506082 intron CG33181 + chrX 8506137 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-41 1093 chrX 8922324 8922357 chrX 8922758 8922791 jockey 6 432 1.0 0.5 0.8 3.3 467 chrX 8922324 intron rdgA + chrX 8922558 intron rdgA + chrX 8922791 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-41 1094 chrX 9508134 9508166 chrX 9509652 9509682 jockey 7 1518 1.0 1.5 1.2 3.2 1548 chrX 9508134 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509682 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-41 1095 chrX 9575790 9575822 chrX 9576114 9576146 mdg3 6 321 0.5 0.5 0.5 4.0 356 chrX 9575790 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-41 1096 chrX 9784176 9784203 chrX 9784364 9784389 4 186 1.0 3.0 2.0 1.3 213 chrX 9784176 intron CG32698 + chrX 9784282 intron CG32698 + chrX 9784389 intron CG32698 + chrX_4_9780001 chrX_9780001 RAL-41 1097 chrX 9791873 9791893 chrX 9791970 9791990 4 97 1.5 2.5 2.0 1.3 117 chrX 9791873 intron CG32698 + chrX 9791932 intron CG32698 + chrX 9791990 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-41 1098 chrX 10223681 10223710 chrX 10223800 10223829 4 119 2.0 1.5 1.8 1.4 148 chrX 10223681 intron CG34408 + chrX 10223755 intron CG34408 + chrX 10223829 intron CG34408 + chrX_4_10220001 chrX_10220001 RAL-41 1099 chrX 10550857 10550887 chrX 10552317 10552354 hobo 8 1466 2.5 2.0 2.2 2.5 1497 chrX 10550857 intron spri - chrX 10551606 intron spri - chrX 10552354 intron spri - chrX_8_10550001 chrX_10550001 RAL-41 1100 chrX 10668934 10668951 chrX 10669011 10669031 4 80 1.5 3.5 2.5 1.1 97 chrX 10668934 intron X11Lbeta + chrX 10668982 intron X11Lbeta + chrX 10669031 intron X11Lbeta + chrX_4_10665001 chrX_10665001 RAL-41 1101 chrX 10686054 10686080 chrX 10691191 10691216 roo 4 5137 2.0 0.5 1.2 1.8 5162 chrX 10686054 intron X11Lbeta + chrX 10688635 intron X11Lbeta + chrX 10691216 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-41 1102 chrX 10977889 10977913 chrX 10977968 10977993 5 78 2.0 2.5 2.2 1.6 104 chrX 10977889 intron CG42339 - chrX 10977941 intron CG42339 - chrX 10977993 intron CG42339 - chrX_5_10975001 chrX_10975001 RAL-41 1103 chrX 11068774 11068798 chrX 11068868 11068892 7 94 0.5 1.5 1.0 3.5 118 chrX 11068774 intergenic CG15203 + chrX 11068833 intergenic CG15203 + chrX 11068892 intergenic not near genes chrX_7_11065001 chrX_11065001 RAL-41 1104 chrX 11141981 11141992 chrX 11142057 11142063 4 74 5.0 0.0 2.5 1.1 82 chrX 11141981 intergenic CG15199 - chrX 11142022 intergenic CG15199 - chrX 11142063 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-41 1105 chrX 11254169 11254201 chrX 11254280 11254312 5 111 0.5 2.0 1.2 2.3 143 chrX 11254169 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254312 intron CG44422 - chrX_5_11250001 chrX_11250001 RAL-41 1106 chrX 11312062 11312089 chrX 11319414 11319438 Stalker2 6 7347 0.5 0.5 0.5 4.0 7376 chrX 11312062 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319438 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-41 1107 chrX 11633422 11633425 chrX 11640475 11640479 297 4 7054 3.5 1.5 2.5 1.1 7057 chrX 11633422 intron Ptp10D + chrX 11636950 intron Ptp10D + chrX 11640479 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-41 1108 chrX 11651221 11651238 chrX 11651301 11651320 4 82 1.5 0.0 0.8 2.2 99 chrX 11651221 intron Ptp10D + chrX 11651270 intron Ptp10D + chrX 11651320 intron Ptp10D + chrX_4_11650001 chrX_11650001 RAL-41 1109 chrX 12094036 12094065 chrX 12094128 12094157 5 92 0.0 0.5 0.2 4.2 121 chrX 12094036 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094157 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-41 1110 chrX 12168136 12168167 chrX 12173578 12173609 I-element 4 5440 1.0 1.5 1.2 1.8 5473 chrX 12168136 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173609 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-41 1111 chrX 12176736 12176769 chrX 12176812 12176838 12 75 3.5 1.5 2.5 3.4 102 chrX 12176736 intron,3` UTR Ten-a +,CG1924 - chrX 12176787 intron,3` UTR Ten-a +,CG1924 - chrX 12176838 intron,3` UTR Ten-a +,CG1924 - chrX_12_12175001 chrX_12175001 RAL-41 1112 chrX 12250606 12250626 chrX 12250682 12250705 5 77 1.0 1.0 1.0 2.5 99 chrX 12250606 intron Ten-a + chrX 12250656 intron Ten-a + chrX 12250705 intron Ten-a + chrX_5_12250001 chrX_12250001 RAL-41 1113 chrX 12272847 12272862 chrX 12272926 12272941 5 79 1.0 4.5 2.8 1.3 94 chrX 12272847 intron Ten-a + chrX 12272894 intron Ten-a + chrX 12272941 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-41 1114 chrX 13172355 13172376 chrX 13172431 13172451 9 76 1.5 1.0 1.2 4.1 96 chrX 13172355 exon CG34411 - chrX 13172403 intron CG34411 - chrX 13172451 intron CG34411 - chrX_9_13170001 chrX_13170001 RAL-41 1115 chrX 13442140 13442170 chrX 13442231 13442261 8 91 1.0 3.0 2.0 2.7 121 chrX 13442140 intergenic not near genes chrX 13442200 intergenic not near genes chrX 13442261 intergenic not near genes chrX_8_13440001 chrX_13440001 RAL-41 1116 chrX 13934292 13934320 chrX 13934375 13934403 4 82 0.5 0.5 0.5 2.7 111 chrX 13934292 intron mamo - chrX 13934348 intron mamo - chrX 13934403 intron mamo - chrX_4_13930001 chrX_13930001 RAL-41 1117 chrX 14105024 14105055 chrX 14114175 14114201 roo 7 9150 2.0 1.5 1.8 2.5 9177 chrX 14105024 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-41 1118 chrX 14131491 14131521 chrX 14131572 14131602 5 80 1.0 3.5 2.2 1.6 111 chrX 14131491 intergenic not near genes chrX 14131546 intergenic not near genes chrX 14131602 intergenic not near genes chrX_5_14130001 chrX_14130001 RAL-41 1119 chrX 14300809 14300834 chrX 14300887 14300912 6 76 1.5 2.5 2.0 2.0 103 chrX 14300809 intergenic not near genes chrX 14300860 intergenic not near genes chrX 14300912 intergenic not near genes chrX_6_14300001 chrX_14300001 RAL-41 1120 chrX 14531358 14531376 chrX 14531447 14531465 5 89 0.5 1.5 1.0 2.5 107 chrX 14531358 intergenic not near genes chrX 14531412 intergenic not near genes chrX 14531465 intergenic not near genes chrX_5_14530001 chrX_14530001 RAL-41 1121 chrX 14636467 14636491 chrX 14641908 14641932 I-element 4 5440 1.0 2.0 1.5 1.6 5465 chrX 14636467 intron NetA - chrX 14639200 intron NetA - chrX 14641932 intron NetA - chrX_4_14635001 chrX_14635001 RAL-41 1122 chrX 14936860 14936889 chrX 14946117 14946145 roo 6 9257 1.0 0.5 0.8 3.3 9285 chrX 14936860 intron pdgy - chrX 14941502 intron pdgy - chrX 14946145 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-41 1123 chrX 15395718 15395737 chrX 15395805 15395824 5 87 0.0 1.5 0.8 2.8 106 chrX 15395718 intron Cngl - chrX 15395771 intron Cngl - chrX 15395824 intron Cngl - chrX_5_15395001 chrX_15395001 RAL-41 1124 chrX 15413058 15413079 chrX 15417360 15417380 Juan 4 4302 2.5 1.5 2.0 1.3 4322 chrX 15413058 intron Cngl - chrX 15415219 intron Cngl - chrX 15417380 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-41 1125 chrX 16295526 16295544 chrX 16295610 16295627 4 83 2.5 0.0 1.2 1.8 101 chrX 16295526 intron CG9911 - chrX 16295576 intron CG9911 - chrX 16295627 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-41 1126 chrX 16492650 16492670 chrX 16498227 16498247 mdg3 4 5577 1.5 0.5 1.0 2.0 5597 chrX 16492650 intron para - chrX 16495448 intron para - chrX 16498247 intron para - chrX_4_16495001 chrX_16495001 RAL-41 1127 chrX 16519954 16519965 chrX 16520038 16520051 4 85 2.0 2.5 2.2 1.2 97 chrX 16519954 intron para - chrX 16520002 intron para - chrX 16520051 intron para - chrX_4_16520001 chrX_16520001 RAL-41 1128 chrX 17010968 17011004 chrX 17011054 17011091 5 86 0.0 0.5 0.2 4.2 123 chrX 17010968 intron CG45002 - chrX 17011030 intron CG45002 - chrX 17011091 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-41 1129 chrX 17110310 17110336 chrX 17110432 17110458 5 122 0.0 0.5 0.2 4.2 148 chrX 17110310 intron CG5004 + chrX 17110384 intron CG5004 + chrX 17110458 intron CG5004 + chrX_5_17110001 chrX_17110001 RAL-41 1130 chrX 17282877 17282901 chrX 17282955 17282979 5 78 3.5 0.0 1.8 1.8 102 chrX 17282877 intron CG5445 + chrX 17282928 5` UTR CG5445 + chrX 17282979 intron CG5445 + chrX_5_17280001 chrX_17280001 RAL-41 1131 chrX 17438742 17438758 chrX 17440612 17440628 6 1873 9.5 7.5 8.5 0.6 1886 chrX 17438742 intron CG12994 - chrX 17439685 intron CG12994 - chrX 17440628 intron CG12994 - chrX_6_17435001 chrX_17435001 RAL-41 1132 chrX 17541355 17541368 chrX 17541446 17541453 4 89 0.5 4.5 2.5 1.1 98 chrX 17541355 intron CG43658 - chrX 17541404 intron CG43658 - chrX 17541453 intron CG43658 - chrX_4_17540001 chrX_17540001 RAL-41 1133 chrX 17555478 17555505 chrX 17555578 17555607 5 101 0.5 2.0 1.2 2.3 129 chrX 17555478 intron CG43658 - chrX 17555542 intron CG43658 - chrX 17555607 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-41 1134 chrX 17680892 17680908 chrX 17680968 17680985 7 75 2.0 1.0 1.5 2.8 93 chrX 17680892 intron chas - chrX 17680938 intron chas - chrX 17680985 intron chas - chrX_7_17680001 chrX_17680001 RAL-41 1135 chrX 18194071 18194100 chrX 18194606 18194635 BS 7 535 1.5 2.0 1.8 2.5 564 chrX 18194071 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194635 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-41 1136 chrX 18230527 18230547 chrX 18235216 18235234 4 4688 14.0 12.5 13.2 0.3 4707 chrX 18230527 intergenic not near genes chrX 18232880 intergenic not near genes chrX 18235234 intergenic not near genes chrX_4_18230001 chrX_18230001 RAL-41 1137 chrX 18245701 18245717 chrX 18246036 18246052 4 335 2.5 2.0 2.2 1.2 351 chrX 18245701 intergenic not near genes chrX 18245876 intergenic not near genes chrX 18246052 intergenic not near genes chrX_4_18245001 chrX_18245001 RAL-41 1138 chrX 18429499 18429523 chrX 18434807 18434834 Transpac 5 5310 1.5 0.5 1.0 2.5 5335 chrX 18429499 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434834 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-41 1139 chrX 18486109 18486138 chrX 18486196 18486227 6 88 4.0 1.0 2.5 1.7 118 chrX 18486109 exon psh - chrX 18486168 intron psh - chrX 18486227 intron psh - chrX_6_18485001 chrX_18485001 RAL-41 1140 chrX 18511062 18511088 chrX 18513331 18513359 6 2272 16.0 9.0 12.5 0.4 2297 chrX 18511062 intron Ggt-1 - chrX 18512210 5` UTR Ggt-1 - chrX 18513359 exon CG6470 - chrX_6_18510001 chrX_18510001 RAL-41 1141 chrX 18577789 18577798 chrX 18577880 18577889 4 91 1.5 4.0 2.8 1.1 100 chrX 18577789 intergenic not near genes chrX 18577839 intergenic not near genes chrX 18577889 intergenic not near genes chrX_4_18575001 chrX_18575001 RAL-41 1142 chrX 18662442 18662456 chrX 18662536 18662551 4 94 2.5 4.5 3.5 0.9 109 chrX 18662442 intergenic CG6696 - chrX 18662496 intergenic CG6696 - chrX 18662551 intergenic CG6696 - chrX_4_18660001 chrX_18660001 RAL-41 1143 chrX 18888667 18888688 chrX 18888751 18888773 4 83 0.0 4.0 2.0 1.3 106 chrX 18888667 3` UTR CG7332 + chrX 18888720 3` UTR CG7332 + chrX 18888773 3` UTR CG7332 + chrX_4_18885001 chrX_18885001 RAL-41 1144 chrX 18896517 18896535 chrX 18896627 18896645 8 110 3.0 0.0 1.5 3.2 128 chrX 18896517 3` UTR CG7349 + chrX 18896581 3` UTR CG7349 + chrX 18896645 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-41 1145 chrX 18947502 18947533 chrX 18947595 18947626 5 92 0.0 0.0 0.0 5.0 124 chrX 18947502 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947626 intron CG43759 + chrX_5_18945001 chrX_18945001 RAL-41 1146 chrX 19014363 19014390 chrX 19014442 19014468 7 78 3.0 2.5 2.8 1.8 105 chrX 19014363 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014468 intron CG43759 + chrX_7_19010001 chrX_19010001 RAL-41 1147 chrX 19084109 19084115 chrX 19084229 19084232 4 118 0.0 0.0 0.0 4.0 123 chrX 19084109 intergenic CR45503 + chrX 19084170 intergenic CR45503 + chrX 19084232 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-41 1148 chrX 19125678 19125695 chrX 19125762 19125779 4 84 3.0 3.0 3.0 1.0 101 chrX 19125678 intron tgy - chrX 19125728 intron tgy - chrX 19125779 intron tgy - chrX_4_19125001 chrX_19125001 RAL-41 1149 chrX 19187534 19187539 chrX 19187609 19187621 7 80 1.0 0.0 0.5 4.7 87 chrX 19187534 intergenic CG33253 +,Mec2 + chrX 19187578 intergenic CG33253 +,Mec2 + chrX 19187621 intergenic CG33253 +,Mec2 + chrX_7_19185001 chrX_19185001 RAL-41 1150 chrX 13057299 13057300 chrX 19242813 19242814 5 6185514 2.0 3.5 2.8 1.3 6185515 chrX 13057299 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-41 1151 chrX 19330003 19330018 chrX 19330077 19330094 9 77 5.0 1.5 3.2 2.1 91 chrX 19330003 intron nAChRalpha7 - chrX 19330048 intron nAChRalpha7 - chrX 19330094 intron nAChRalpha7 - chrX_9_19330001 chrX_19330001 RAL-41 1152 chrX 19472132 19472156 chrX 19472702 19472726 jockey 6 567 2.0 2.5 2.2 1.9 594 chrX 19472132 intergenic kek5 + chrX 19472429 intergenic not near genes chrX 19472726 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-41 1153 chrX 19500561 19500741 chrX 19500638 19500828 8 82 0.0 2.0 1.0 4.0 267 chrX 19500561 intron,intron CG14200 +,Pfrx + chrX 19500694 intron,intron CG14200 +,Pfrx + chrX 19500828 intron,intron CG14200 +,Pfrx + chrX_8_19500001 chrX_19500001 RAL-41 1154 chrX 19662035 19662048 chrX 19662258 19662271 4 221 1.5 2.5 2.0 1.3 236 chrX 19662035 intron CG14223 - chrX 19662153 intron CG14223 - chrX 19662271 intron CG14223 - chrX_4_19660001 chrX_19660001 RAL-41 1155 chrX 19710073 19710102 chrX 19711858 19711888 S-element 6 1786 1.0 1.0 1.0 3.0 1815 chrX 19710073 intron meso18E - chrX 19710980 intron meso18E - chrX 19711888 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-41 1156 chrX 19897389 19897403 chrX 19897465 19897477 8 76 3.5 2.0 2.8 2.1 88 chrX 19897389 intron Hers + chrX 19897433 intron Hers + chrX 19897477 intron Hers + chrX_8_19895001 chrX_19895001 RAL-41 1157 chrX 20016282 20016306 chrX 20016678 20016701 10 394 0.5 2.5 1.5 4.0 419 chrX 20016282 intron Dop2R - chrX 20016492 intron Dop2R - chrX 20016701 intron Dop2R - chrX_10_20015001 chrX_20015001 RAL-41 1158 chrX 20082008 20082028 chrX 20082089 20082110 6 81 1.0 4.5 2.8 1.6 102 chrX 20082008 intergenic not near genes chrX 20082059 intergenic not near genes chrX 20082110 intergenic not near genes chrX_6_20080001 chrX_20080001 RAL-41 1159 chrX 20312889 20312906 chrX 20312959 20312984 5 76 1.0 0.5 0.8 2.8 95 chrX 20312889 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20312984 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-41 1160 chrX 20369319 20369338 chrX 20369403 20369421 7 82 1.5 3.0 2.2 2.2 102 chrX 20369319 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369421 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-41 1161 chrX 20374124 20374126 chrX 20374200 20374202 4 76 0.0 2.5 1.2 1.8 78 chrX 20374124 intergenic not near genes chrX 20374163 intergenic not near genes chrX 20374202 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-41 1162 chrX 20377325 20377349 chrX 20378788 20378816 hobo 5 1463 2.5 1.5 2.0 1.7 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-41 1163 chrX 20437361 20437389 chrX 20437936 20437964 5 572 2.0 2.5 2.2 1.6 603 chrX 20437361 intron CG1695 + chrX 20437662 intron CG1695 + chrX 20437964 intron CG1695 + chrX_5_20435001 chrX_20435001 RAL-41 1164 chrX 20443169 20443193 chrX 20443245 20443269 7 75 0.0 0.5 0.2 5.8 100 chrX 20443169 exon CG1695 + chrX 20443219 intron CG1695 + chrX 20443269 intron CG1695 + chrX_7_20440001 chrX_20440001 RAL-41 1165 chrX 20504140 20504148 chrX 20505661 20505669 transib2 4 1521 2.0 2.5 2.2 1.2 1529 chrX 20504140 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505669 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-41 1166 chrX 20836730 20836757 chrX 20844332 20844359 roo 5 7602 0.5 1.0 0.8 2.8 7629 chrX 20836730 intron shakB - chrX 20840544 intron shakB - chrX 20844359 intron shakB - chrX_5_20840001 chrX_20840001 RAL-41 1167 chrX 20940727 20940751 chrX 20942195 20942219 hobo 6 1468 4.0 1.5 2.8 1.6 1492 chrX 20940727 intergenic not near genes chrX 20941473 intergenic not near genes chrX 20942219 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-41 1168 chrX 21076349 21076356 chrX 21076427 21076435 4 79 0.5 0.5 0.5 2.7 86 chrX 21076349 intron bves + chrX 21076392 intron bves + chrX 21076435 intron bves + chrX_4_21075001 chrX_21075001 RAL-41 1169 chrX 21410663 21410671 chrX 21410731 21410750 4 76 0.0 0.5 0.2 3.3 87 chrX 21410663 intergenic CR45003 - chrX 21410706 intergenic CR45003 - chrX 21410750 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-41 1170 chrX 21428345 21428355 chrX 21428535 21428543 5 189 2.5 0.0 1.2 2.3 198 chrX 21428345 intron CG42343 - chrX 21428444 intron CG42343 - chrX 21428543 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-41 1171 chrX 21447798 21447812 chrX 21448149 21448156 4 347 1.5 3.0 2.2 1.2 358 chrX 21447798 intron CG42343 - chrX 21447977 intron CG42343 - chrX 21448156 intron CG42343 - chrX_4_21445001 chrX_21445001 RAL-41 1172 chrX 21458708 21458729 chrX 21464143 21464165 Ivk 4 5436 0.0 2.5 1.2 1.8 5457 chrX 21458708 intergenic not near genes chrX 21461436 intergenic not near genes chrX 21464165 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-41 1173 chrX 21516986 21517018 chrX 21517065 21517070 8 75 2.5 1.0 1.8 2.9 84 chrX 21516986 intron CR45082 - chrX 21517028 intron CR45082 - chrX 21517070 intron CR45082 - chrX_8_21515001 chrX_21515001 RAL-41 1174 chrX 21565434 21565445 chrX 21565512 21565523 4 78 1.0 5.5 3.2 1.0 89 chrX 21565434 intergenic not near genes chrX 21565478 intergenic not near genes chrX 21565523 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-41 1175 chrX 22660569 22660600 chrX 22660651 22660684 4 84 2.0 1.5 1.8 1.4 115 chrX 22660569 intron CR44997 + chrX 22660626 intron CR44997 + chrX 22660684 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-41 1176 chrX 22677295 22677316 chrX 22677504 22677525 5 209 1.5 1.0 1.2 2.3 230 chrX 22677295 intron CR44997 + chrX 22677410 intron CR44997 + chrX 22677525 intron CR44997 + chrX_5_22675001 chrX_22675001 RAL-41 1177 chrX 22697495 22697523 chrX 22701792 22701820 Juan 5 4297 0.0 2.0 1.0 2.5 4325 chrX 22697495 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701820 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-41 1178 chrX 22992393 22992430 chrX 22992524 22992561 9 131 2.0 2.0 2.0 3.0 168 chrX 22992393 intron,intron stnA -,stnB - chrX 22992477 intron,intron stnA -,stnB - chrX 22992561 intron,intron stnA -,stnB - chrX_9_22990001 chrX_22990001 RAL-41 1179 chrY 975792 975819 chrY 975872 975899 6 79 110.5 110.5 110.5 0.1 107 chrY 975792 intergenic not near genes chrY 975846 intergenic not near genes chrY 975899 intergenic not near genes chrY_6_975001 chrY_975001 RAL-41