SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47445	47488	chr2L	52570	52607	jockey	16	5123	8.5	12.0	10.2	1.4	5162	chr2L	47445	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52607	intron	Cda5 -	chr2L_16_50001	chr2L_50001	RAL-40
17	chr2L	347865	347919	chr2L	355385	355414	blood	22	7518	9.0	7.5	8.2	2.4	7549	chr2L	347865	3` UTR	Plc21C +	chr2L	351640	intron	Plc21C +	chr2L	355414	3` UTR	Plc21C +	chr2L_22_350001	chr2L_350001	RAL-40
22	chr2L	686916	686933	chr2L	695965	695993	roo	9	9059	5.0	7.0	6.0	1.3	9077	chr2L	686916	intron	ds -	chr2L	691454	intron	ds -	chr2L	695993	intron	ds -	chr2L_9_690001	chr2L_690001	RAL-40
26	chr2L	770454	770470	chr2L	772255	772271	Bari1	5	1801	8.0	6.0	7.0	0.6	1817	chr2L	770454	intergenic	not near genes	chr2L	771362	intergenic	not near genes	chr2L	772271	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-40
27	chr2L	770471	770492	chr2L	772245	772263	Bari1	6	1783	3.5	4.5	4.0	1.2	1792	chr2L	770471	intergenic	not near genes	chr2L	771367	intergenic	not near genes	chr2L	772263	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-40
39	chr2L	976858	976890	chr2L	984514	984546	roo	11	7655	9.5	2.0	5.8	1.6	7688	chr2L	976858	intergenic	not near genes	chr2L	980702	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_11_980001	chr2L_980001	RAL-40
40	chr2L	996704	996748	chr2L	1005819	1005863	roo	6	9115	0.0	4.5	2.2	1.9	9159	chr2L	996704	intergenic	not near genes	chr2L	1001284	intergenic	not near genes	chr2L	1005863	intergenic	not near genes	chr2L_6_1000001	chr2L_1000001	RAL-40
45	chr2L	1220112	1220159	chr2L	1227598	1227645	blood	21	7485	8.5	7.0	7.8	2.4	7533	chr2L	1220112	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227645	intron	CG42329 +	chr2L_21_1220001	chr2L_1220001	RAL-40
48	chr2L	1301739	1301781	chr2L	1302298	1302340	gypsy	29	556	6.5	8.5	7.5	3.4	601	chr2L	1301739	intergenic	not near genes	chr2L	1302040	intergenic	not near genes	chr2L	1302340	intergenic	not near genes	chr2L_29_1300001	chr2L_1300001	RAL-40
56	chr2L	1570671	1570717	chr2L	1573563	1573609	F-element	15	2892	5.0	3.5	4.2	2.9	2938	chr2L	1570671	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573609	intron	haf +	chr2L_15_1570001	chr2L_1570001	RAL-40
61	chr2L	1678940	1679007	chr2L	1686443	1686462	blood	11	7493	0.0	9.5	4.8	1.9	7522	chr2L	1678940	intron	chinmo +	chr2L	1682701	intron	chinmo +	chr2L	1686462	intron	chinmo +	chr2L_11_1680001	chr2L_1680001	RAL-40
62	chr2L	1711347	1711375	chr2L	1711681	1711708	mdg3	7	335	8.0	7.5	7.8	0.8	361	chr2L	1711347	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711708	3` UTR	frtz -	chr2L_7_1710001	chr2L_1710001	RAL-40
69	chr2L	2100377	2100402	chr2L	2109531	2109565	roo	10	9161	10.0	7.5	8.8	1.0	9188	chr2L	2100377	intron	dpr3 -	chr2L	2104971	intron	dpr3 -	chr2L	2109565	intron	dpr3 -	chr2L_10_2100001	chr2L_2100001	RAL-40
70	chr2L	2112122	2112143	chr2L	2119781	2119825	opus	15	7665	1.5	3.0	2.2	4.7	7703	chr2L	2112122	intergenic	not near genes	chr2L	2115974	intergenic	not near genes	chr2L	2119825	intergenic	not near genes	chr2L_15_2115001	chr2L_2115001	RAL-40
78	chr2L	2294031	2294075	chr2L	2299249	2299265	copia	7	5212	1.5	7.5	4.5	1.3	5234	chr2L	2294031	intergenic	not near genes	chr2L	2296648	intergenic	not near genes	chr2L	2299265	intergenic	not near genes	chr2L_7_2295001	chr2L_2295001	RAL-40
87	chr2L	2565534	2565562	chr2L	2571627	2571646	297	17	6092	1.5	6.0	3.8	3.5	6112	chr2L	2565534	exon	Cyp309a2 -	chr2L	2568590	intron	Cyp309a2 -	chr2L	2571646	intron	Cyp309a2 -	chr2L_17_2565001	chr2L_2565001	RAL-40
89	chr2L	2661221	2661234	chr2L	2663031	2663060	I-element	9	1824	1.0	1.5	1.2	4.1	1839	chr2L	2661221	intergenic	not near genes	chr2L	2662140	intergenic	not near genes	chr2L	2663060	intergenic	not near genes	chr2L_9_2660001	chr2L_2660001	RAL-40
92	chr2L	2772595	2772601	chr2L	2779197	2779203	297	4	6602	6.0	7.5	6.8	0.5	6608	chr2L	2772595	3` UTR	Syt1 -	chr2L	2775899	intron	Syt1 -	chr2L	2779203	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	RAL-40
93	chr2L	2772602	2772627	chr2L	2779194	2779198	297	8	6596	4.0	7.0	5.5	1.2	6596	chr2L	2772602	3` UTR	Syt1 -	chr2L	2775900	intron	Syt1 -	chr2L	2779198	3` UTR	Syt1 -	chr2L_8_2775001	chr2L_2775001	RAL-40
108	chr2L	3073014	3073060	chr2L	3078232	3078283	copia	22	5221	6.5	7.5	7.0	2.8	5269	chr2L	3073014	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078283	intron	toc -	chr2L_22_3075001	chr2L_3075001	RAL-40
116	chr2L	3202717	3202772	chr2L	3210166	3210221	mdg1	19	7448	3.0	0.0	1.5	7.6	7504	chr2L	3202717	intergenic	not near genes	chr2L	3206469	intergenic	not near genes	chr2L	3210221	intergenic	CR45336 +	chr2L_19_3205001	chr2L_3205001	RAL-40
122	chr2L	3251491	3251505	chr2L	3259075	3259090	springer	9	7585	9.0	8.5	8.8	0.9	7599	chr2L	3251491	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259090	intergenic	not near genes	chr2L_9_3255001	chr2L_3255001	RAL-40
123	chr2L	3251510	3251521	chr2L	3259070	3259096	springer	6	7578	5.0	7.5	6.2	0.8	7586	chr2L	3251510	intergenic	not near genes	chr2L	3255303	intergenic	not near genes	chr2L	3259096	intergenic	not near genes	chr2L_6_3255001	chr2L_3255001	RAL-40
128	chr2L	3388582	3388598	chr2L	3388843	3388858	pogo	14	261	15.5	8.5	12.0	1.1	276	chr2L	3388582	intergenic	CG42460 -	chr2L	3388720	intergenic	CG42460 -	chr2L	3388858	intergenic	CG42460 -,CR44791 +	chr2L_14_3385001	chr2L_3385001	RAL-40
129	chr2L	3388599	3388624	chr2L	3388840	3388885	pogo	15	259	11.0	7.5	9.2	1.5	286	chr2L	3388599	intergenic	CG42460 -	chr2L	3388742	intergenic	CG42460 -	chr2L	3388885	intergenic	CG42460 -,CR44791 +	chr2L_15_3385001	chr2L_3385001	RAL-40
134	chr2L	3649766	3649805	chr2L	3654988	3655027	copia	17	5221	1.0	7.0	4.0	3.4	5261	chr2L	3649766	intron	for -	chr2L	3652396	intron	for -	chr2L	3655027	intron	for -	chr2L_17_3650001	chr2L_3650001	RAL-40
145	chr2L	4066038	4066057	chr2L	4068871	4068902	Juan	6	2843	7.5	6.0	6.8	0.8	2864	chr2L	4066038	intron	ed +	chr2L	4067470	intron	ed +	chr2L	4068902	intron	ed +	chr2L_6_4065001	chr2L_4065001	RAL-40
148	chr2L	4181294	4181298	chr2L	4183906	4183950	Burdock	6	2640	5.5	7.0	6.2	0.8	2656	chr2L	4181294	intergenic	not near genes	chr2L	4182622	intergenic	not near genes	chr2L	4183950	intergenic	not near genes	chr2L_6_4180001	chr2L_4180001	RAL-40
159	chr2L	4601684	4601695	chr2L	4609145	4609156	mdg1	8	7461	19.5	5.5	12.5	0.6	7472	chr2L	4601684	intron	dp -	chr2L	4605420	intron	dp -	chr2L	4609156	intron	dp -	chr2L_8_4605001	chr2L_4605001	RAL-40
160	chr2L	4601697	4601734	chr2L	4609143	4609195	mdg1	30	7458	7.0	5.5	6.2	4.2	7498	chr2L	4601697	intron	dp -	chr2L	4605446	intron	dp -	chr2L	4609195	intron	dp -	chr2L_30_4605001	chr2L_4605001	RAL-40
161	chr2L	4661823	4661855	chr2L	4669423	4669455	opus	15	7600	7.0	17.5	12.2	1.1	7632	chr2L	4661823	intergenic	not near genes	chr2L	4665639	intergenic	not near genes	chr2L	4669455	intergenic	not near genes	chr2L_15_4665001	chr2L_4665001	RAL-40
168	chr2L	4918150	4918197	chr2L	4923243	4923280	jockey	17	5092	6.0	6.5	6.2	2.4	5130	chr2L	4918150	intron	hoe1 -	chr2L	4920715	intron	hoe1 -	chr2L	4923280	intron	hoe1 -	chr2L_17_4920001	chr2L_4920001	RAL-40
179	chr2L	5342751	5342796	chr2L	5345151	5345196	Doc	20	2400	7.0	12.0	9.5	1.9	2445	chr2L	5342751	intergenic	not near genes	chr2L	5343974	intergenic	not near genes	chr2L	5345196	intergenic	not near genes	chr2L_20_5340001	chr2L_5340001	RAL-40
195	chr2L	5827692	5827741	chr2L	5836720	5836759	roo	24	9025	7.5	8.0	7.8	2.7	9067	chr2L	5827692	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836759	intron	TrissinR +	chr2L_24_5830001	chr2L_5830001	RAL-40
215	chr2L	6363128	6363180	chr2L	6366070	6366117	Burdock	11	2939	8.0	5.0	6.5	1.5	2989	chr2L	6363128	intergenic	not near genes	chr2L	6364622	intergenic	not near genes	chr2L	6366117	intergenic	not near genes	chr2L_11_6360001	chr2L_6360001	RAL-40
217	chr2L	6426838	6426887	chr2L	6445118	6445156	roo	26	18279	7.5	6.5	7.0	3.2	18318	chr2L	6426838	3` UTR	CG9527 -	chr2L	6435997	intron	CG9527 -	chr2L	6445156	exon	CG9527 -	chr2L_26_6435001	chr2L_6435001	RAL-40
228	chr2L	6876772	6876810	chr2L	6882965	6882989	diver	10	6196	5.0	8.0	6.5	1.3	6217	chr2L	6876772	intron	Nlg2 +	chr2L	6879880	intron	Nlg2 +	chr2L	6882989	intron	Nlg2 +	chr2L_10_6875001	chr2L_6875001	RAL-40
247	chr2L	7343307	7343349	chr2L	7350440	7350474	roo	12	7128	7.0	6.0	6.5	1.6	7167	chr2L	7343307	intron	Wnt6 +	chr2L	7346890	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_12_7345001	chr2L_7345001	RAL-40
255	chr2L	7579171	7579209	chr2L	7579382	7579420	BS	11	211	4.5	0.0	2.2	3.4	249	chr2L	7579171	intergenic	RapGAP1 -	chr2L	7579296	intergenic	RapGAP1 -	chr2L	7579420	intergenic	RapGAP1 -	chr2L_11_7575001	chr2L_7575001	RAL-40
266	chr2L	7977068	7977112	chr2L	7984063	7984095	297	8	6992	4.0	2.0	3.0	2.0	7027	chr2L	7977068	intron	Snoo -	chr2L	7980582	intron	Snoo -	chr2L	7984095	intron,5` UTR	Snoo -,CG7231 +	chr2L_8_7980001	chr2L_7980001	RAL-40
267	chr2L	8013598	8013615	chr2L	8018822	8018833	copia	9	5223	15.0	1.0	8.0	1.0	5235	chr2L	8013598	intron	Tg +	chr2L	8016216	intron	Tg +	chr2L	8018833	intron	Tg +	chr2L_9_8015001	chr2L_8015001	RAL-40
268	chr2L	8018823	8018836	chr2L	8023627	8023639	Doc	5	4804	1.0	8.0	4.5	0.9	4816	chr2L	8018823	intron	Tg +	chr2L	8021231	intron	Tg +	chr2L	8023639	intron	Tg +	chr2L_5_8020001	chr2L_8020001	RAL-40
281	chr2L	8452402	8452444	chr2L	8461593	8461635	roo	20	9190	6.0	10.5	8.2	2.2	9233	chr2L	8452402	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461635	intron	fu12 -	chr2L_20_8455001	chr2L_8455001	RAL-40
285	chr2L	8594449	8594494	chr2L	8601523	8601568	297	12	7074	5.0	7.0	6.0	1.7	7119	chr2L	8594449	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601568	intron	Sema-1a +	chr2L_12_8595001	chr2L_8595001	RAL-40
288	chr2L	8723096	8723144	chr2L	8731493	8731541	Tirant	27	8397	6.0	5.5	5.8	4.0	8445	chr2L	8723096	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731541	intron	raw -	chr2L_27_8725001	chr2L_8725001	RAL-40
299	chr2L	9000260	9000310	chr2L	9007790	9007840	roo	23	7529	3.0	0.0	1.5	9.2	7580	chr2L	9000260	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007840	intergenic	not near genes	chr2L_23_9000001	chr2L_9000001	RAL-40
307	chr2L	9217977	9218004	chr2L	9222784	9222819	Doc	7	4807	4.0	0.0	2.0	2.3	4842	chr2L	9217977	intron	tai +	chr2L	9220398	intron	tai +	chr2L	9222819	intron	tai +	chr2L_7_9220001	chr2L_9220001	RAL-40
327	chr2L	9393494	9393530	chr2L	9396480	9396511	jockey	5	2985	0.0	8.0	4.0	1.0	3017	chr2L	9393494	intron	Shawl -	chr2L	9395002	intron	Shawl -	chr2L	9396511	intron	Shawl -	chr2L_5_9395001	chr2L_9395001	RAL-40
341	chr2L	9973719	9973756	chr2L	9980848	9980877	HMS-Beagle	21	7130	4.5	7.0	5.8	3.1	7158	chr2L	9973719	intergenic	not near genes	chr2L	9977298	intergenic	not near genes	chr2L	9980877	intergenic	not near genes	chr2L_21_9975001	chr2L_9975001	RAL-40
346	chr2L	10138178	10138190	chr2L	10143442	10143454	Rt1c	5	5264	5.5	17.0	11.2	0.4	5276	chr2L	10138178	intron	CG44153 -	chr2L	10140816	intron	CG44153 -	chr2L	10143454	intron	CG44153 -	chr2L_5_10140001	chr2L_10140001	RAL-40
347	chr2L	10156303	10156354	chr2L	10163793	10163833	blood	19	7481	5.5	5.5	5.5	2.9	7530	chr2L	10156303	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160068	intron	CG44153 -	chr2L	10163833	intron	CG44153 -	chr2L_19_10160001	chr2L_10160001	RAL-40
360	chr2L	10592821	10592875	chr2L	10600502	10600557	opus	13	7680	2.0	4.5	3.2	3.1	7736	chr2L	10592821	intron	Trim9 +	chr2L	10596689	intron	Trim9 +	chr2L	10600557	intron	Trim9 +	chr2L_13_10595001	chr2L_10595001	RAL-40
368	chr2L	10862846	10862872	chr2L	10864464	10864485	Rt1c	7	1622	3.5	9.5	6.5	0.9	1639	chr2L	10862846	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864485	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	RAL-40
369	chr2L	10876551	10876568	chr2L	10883633	10883650	297	6	7082	7.0	7.0	7.0	0.8	7099	chr2L	10876551	intergenic	not near genes	chr2L	10880100	intergenic	not near genes	chr2L	10883650	intergenic	not near genes	chr2L_6_10880001	chr2L_10880001	RAL-40
373	chr2L	10946936	10946951	chr2L	10956171	10956186	roo	4	9234	4.5	4.5	4.5	0.7	9250	chr2L	10946936	intron	dpr2 -	chr2L	10951561	intron	dpr2 -	chr2L	10956186	intron	dpr2 -	chr2L_4_10950001	chr2L_10950001	RAL-40
374	chr2L	10946952	10946965	chr2L	10956163	10956200	roo	8	9232	3.5	4.5	4.0	1.6	9248	chr2L	10946952	intron	dpr2 -	chr2L	10951576	intron	dpr2 -	chr2L	10956200	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-40
380	chr2L	11315248	11315270	chr2L	11317672	11317681	G2	4	2421	3.0	5.5	4.2	0.8	2433	chr2L	11315248	intergenic	not near genes	chr2L	11316464	intergenic	not near genes	chr2L	11317681	intergenic	not near genes	chr2L_4_11315001	chr2L_11315001	RAL-40
393	chr2L	11540558	11540611	chr2L	11547983	11548033	Tabor	14	7423	9.0	9.5	9.2	1.4	7475	chr2L	11540558	intergenic	not near genes	chr2L	11544296	intergenic	not near genes	chr2L	11548033	intergenic	not near genes	chr2L_14_11540001	chr2L_11540001	RAL-40
395	chr2L	11563632	11563663	chr2L	11568849	11568887	copia	9	5222	9.0	9.0	9.0	0.9	5255	chr2L	11563632	intergenic	not near genes	chr2L	11566260	intergenic	not near genes	chr2L	11568887	intergenic	not near genes	chr2L_9_11565001	chr2L_11565001	RAL-40
398	chr2L	11614069	11614084	chr2L	11615545	11615587	hopper2	5	1490	4.0	4.0	4.0	1.0	1518	chr2L	11614069	intron	kek2 +	chr2L	11614828	intron	kek2 +	chr2L	11615587	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-40
403	chr2L	11713487	11713522	chr2L	11720975	11721010	blood	16	7486	5.0	5.5	5.2	2.6	7523	chr2L	11713487	intergenic	not near genes	chr2L	11717248	intergenic	not near genes	chr2L	11721010	intergenic	CR44143 +	chr2L_16_11715001	chr2L_11715001	RAL-40
411	chr2L	12067314	12067357	chr2L	12074382	12074423	297	25	7072	5.5	7.0	6.2	3.5	7109	chr2L	12067314	intergenic	not near genes	chr2L	12070868	intergenic	not near genes	chr2L	12074423	intergenic	not near genes	chr2L_25_12070001	chr2L_12070001	RAL-40
431	chr2L	12558307	12558323	chr2L	12565456	12565472	HMS-Beagle	6	7148	13.0	4.5	8.8	0.6	7165	chr2L	12558307	intergenic	not near genes	chr2L	12561890	intergenic	not near genes	chr2L	12565472	intergenic	not near genes	chr2L_6_12560001	chr2L_12560001	RAL-40
432	chr2L	12558325	12558333	chr2L	12565452	12565482	HMS-Beagle	4	7143	9.5	4.0	6.8	0.5	7157	chr2L	12558325	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_4_12560001	chr2L_12560001	RAL-40
437	chr2L	12728901	12728949	chr2L	12729163	12729206	pogo	28	260	5.5	3.0	4.2	5.4	305	chr2L	12728901	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729206	exon	MRP +	chr2L_28_12725001	chr2L_12725001	RAL-40
438	chr2L	12731041	12731048	chr2L	12735828	12735835	F-element	7	4786	7.5	8.0	7.8	0.8	4794	chr2L	12731041	intron	MRP +	chr2L	12733438	intron	MRP +	chr2L	12735835	intron	MRP +	chr2L_7_12730001	chr2L_12730001	RAL-40
439	chr2L	12731049	12731089	chr2L	12735826	12735876	F-element	20	4786	3.5	8.0	5.8	2.9	4827	chr2L	12731049	intron	MRP +	chr2L	12733462	intron	MRP +	chr2L	12735876	intron	MRP +	chr2L_20_12730001	chr2L_12730001	RAL-40
440	chr2L	12739158	12739166	chr2L	12743959	12743967	Doc	5	4801	12.5	6.0	9.2	0.5	4809	chr2L	12739158	exon	MRP +	chr2L	12741562	intron	MRP +	chr2L	12743967	intron	MRP +	chr2L_5_12740001	chr2L_12740001	RAL-40
441	chr2L	12739167	12739201	chr2L	12743954	12743996	Doc	18	4799	6.5	5.5	6.0	2.6	4829	chr2L	12739167	exon	MRP +	chr2L	12741582	intron	MRP +	chr2L	12743996	exon	MRP +	chr2L_18_12740001	chr2L_12740001	RAL-40
443	chr2L	12763807	12763867	chr2L	12764039	12764087	BS	7	229	0.0	0.0	0.0	7.0	280	chr2L	12763807	intergenic	not near genes	chr2L	12763947	intergenic	not near genes	chr2L	12764087	intergenic	not near genes	chr2L_7_12760001	chr2L_12760001	RAL-40
444	chr2L	12781787	12781805	chr2L	12789257	12789275	Quasimodo	6	7470	11.0	9.0	10.0	0.5	7488	chr2L	12781787	intergenic	not near genes	chr2L	12785531	intergenic	not near genes	chr2L	12789275	intergenic	not near genes	chr2L_6_12785001	chr2L_12785001	RAL-40
445	chr2L	12781809	12781814	chr2L	12789253	12789284	Quasimodo	5	7464	10.0	8.5	9.2	0.5	7475	chr2L	12781809	intergenic	not near genes	chr2L	12785546	intergenic	not near genes	chr2L	12789284	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-40
446	chr2L	12791588	12791630	chr2L	12795283	12795325	F-element	19	3692	4.5	6.0	5.2	3.1	3737	chr2L	12791588	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795325	intergenic	not near genes	chr2L_19_12790001	chr2L_12790001	RAL-40
448	chr2L	12861678	12861727	chr2L	12863165	12863214	hobo	21	1482	5.5	4.5	5.0	3.5	1536	chr2L	12861678	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863214	intergenic	not near genes	chr2L_21_12860001	chr2L_12860001	RAL-40
449	chr2L	12894005	12894046	chr2L	12895492	12895528	hobo	5	1484	4.5	9.0	6.8	0.6	1523	chr2L	12894005	intergenic	not near genes	chr2L	12894766	intergenic	not near genes	chr2L	12895528	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-40
451	chr2L	12933835	12933883	chr2L	12941322	12941352	blood	16	7483	5.5	8.5	7.0	2.0	7517	chr2L	12933835	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941352	intergenic	not near genes	chr2L_16_12935001	chr2L_12935001	RAL-40
460	chr2L	13241941	13241949	chr2L	13244345	13244353	BS	5	2404	9.5	4.5	7.0	0.6	2412	chr2L	13241941	5` UTR	CR45330 +	chr2L	13243147	intron	CR45330 +	chr2L	13244353	5` UTR	CR45330 +	chr2L_5_13240001	chr2L_13240001	RAL-40
465	chr2L	13405632	13405673	chr2L	13410444	13410490	Doc	12	4816	5.0	10.5	7.8	1.4	4858	chr2L	13405632	exon	CG7110 +	chr2L	13408061	intron	CG7110 +	chr2L	13410490	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-40
466	chr2L	13449445	13449476	chr2L	13456901	13456932	Quasimodo	21	7455	9.5	10.0	9.8	1.9	7487	chr2L	13449445	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453188	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_21_13450001	chr2L_13450001	RAL-40
467	chr2L	13449477	13449493	chr2L	13456898	13456949	Quasimodo	11	7453	4.5	10.0	7.2	1.3	7472	chr2L	13449477	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453213	intron	CG42784 +	chr2L	13456949	intron	CG42784 +	chr2L_11_13450001	chr2L_13450001	RAL-40
469	chr2L	13481440	13481470	chr2L	13482062	13482097	jockey	12	625	6.0	6.0	6.0	1.7	657	chr2L	13481440	intron	CG42784 +	chr2L	13481768	intron	CG42784 +	chr2L	13482097	intron	CG42784 +	chr2L_12_13480001	chr2L_13480001	RAL-40
479	chr2L	13761800	13761825	chr2L	13762914	13762920	Doc	6	1118	10.5	7.0	8.8	0.6	1120	chr2L	13761800	intron	TM9SF4 +	chr2L	13762360	intron	TM9SF4 +	chr2L	13762920	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-40
481	chr2L	13853069	13853079	chr2L	13862239	13862244	roo	6	9169	19.5	14.5	17.0	0.3	9175	chr2L	13853069	intron	CenG1A +	chr2L	13857656	intron	CenG1A +	chr2L	13862244	intron	CenG1A +	chr2L_6_13855001	chr2L_13855001	RAL-40
482	chr2L	13853082	13853111	chr2L	13862234	13862281	roo	19	9167	9.5	12.0	10.8	1.6	9199	chr2L	13853082	intron	CenG1A +	chr2L	13857682	intron	CenG1A +	chr2L	13862281	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	RAL-40
493	chr2L	14465567	14465618	chr2L	14469050	14469115	hopper2	16	3493	8.5	0.0	4.2	3.1	3548	chr2L	14465567	intergenic	not near genes	chr2L	14467341	intergenic	not near genes	chr2L	14469115	intergenic	not near genes	chr2L_16_14465001	chr2L_14465001	RAL-40
500	chr2L	14642552	14642601	chr2L	14651734	14651784	roo	24	9181	4.0	6.0	5.0	4.0	9232	chr2L	14642552	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651784	intron	osp -	chr2L_24_14645001	chr2L_14645001	RAL-40
511	chr2L	14803860	14803910	chr2L	14809083	14809133	copia	18	5219	8.0	5.5	6.8	2.3	5273	chr2L	14803860	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809133	intergenic	not near genes	chr2L_18_14805001	chr2L_14805001	RAL-40
515	chr2L	14889933	14889981	chr2L	14890378	14890426	jockey	19	442	8.0	6.5	7.2	2.3	493	chr2L	14889933	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890426	intergenic	not near genes	chr2L_19_14890001	chr2L_14890001	RAL-40
518	chr2L	14984382	14984398	chr2L	14991984	14992020	opus	9	7616	8.0	5.5	6.8	1.2	7638	chr2L	14984382	intron	mol -	chr2L	14988201	intron	mol -	chr2L	14992020	intron	mol -	chr2L_9_14985001	chr2L_14985001	RAL-40
533	chr2L	15446035	15446080	chr2L	15453524	15453569	blood	23	7489	8.5	11.0	9.8	2.1	7534	chr2L	15446035	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453569	intergenic	not near genes	chr2L_23_15445001	chr2L_15445001	RAL-40
540	chr2L	15586390	15586440	chr2L	15593462	15593512	297	29	7071	8.0	7.0	7.5	3.4	7122	chr2L	15586390	intergenic	not near genes	chr2L	15589951	intergenic	not near genes	chr2L	15593512	intergenic	not near genes	chr2L_29_15585001	chr2L_15585001	RAL-40
545	chr2L	15826876	15826887	chr2L	15829290	15829301	Tabor	8	2414	7.5	15.0	11.2	0.7	2425	chr2L	15826876	intergenic	not near genes	chr2L	15828088	intergenic	not near genes	chr2L	15829301	intergenic	not near genes	chr2L_8_15825001	chr2L_15825001	RAL-40
550	chr2L	15956003	15956052	chr2L	15957490	15957539	hobo	20	1485	6.0	4.5	5.2	3.2	1536	chr2L	15956003	intron	beat-Ib -	chr2L	15956771	intron	beat-Ib -	chr2L	15957539	intron	beat-Ib -	chr2L_20_15955001	chr2L_15955001	RAL-40
555	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	17.5	28.5	23.0	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-40
558	chr2L	16141170	16141194	chr2L	16146397	16146420	copia	11	5227	0.0	8.0	4.0	2.2	5250	chr2L	16141170	intergenic	not near genes	chr2L	16143795	intergenic	not near genes	chr2L	16146420	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	RAL-40
559	chr2L	16153725	16153749	chr2L	16160811	16160837	297	15	7085	6.5	4.5	5.5	2.3	7112	chr2L	16153725	intergenic	not near genes	chr2L	16157281	intergenic	not near genes	chr2L	16160837	intergenic	not near genes	chr2L_15_16155001	chr2L_16155001	RAL-40
562	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	17.5	28.5	23.0	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-40
567	chr2L	16280240	16280265	chr2L	16281431	16281445	1360	4	1188	5.0	5.0	5.0	0.7	1205	chr2L	16280240	intron	crp -	chr2L	16280842	intron	crp -	chr2L	16281445	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-40
568	chr2L	16280271	16280287	chr2L	16281429	16281478	1360	4	1177	2.0	4.0	3.0	1.0	1207	chr2L	16280271	intron	crp -	chr2L	16280874	intron	crp -	chr2L	16281478	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-40
576	chr2L	16511944	16511993	chr2L	16519078	16519127	HMS-Beagle	17	7133	6.0	6.5	6.2	2.4	7183	chr2L	16511944	intron	CG5953 -	chr2L	16515536	intron	CG5953 -	chr2L	16519127	intron	CG5953 -	chr2L_17_16515001	chr2L_16515001	RAL-40
585	chr2L	16852789	16852804	chr2L	16859951	16859966	Doc4-element	7	7162	13.0	11.5	12.2	0.5	7177	chr2L	16852789	intergenic	CG31810 -	chr2L	16856378	intron	CG31809 -	chr2L	16859966	intergenic	CG6012 -	chr2L_7_16855001	chr2L_16855001	RAL-40
587	chr2L	16958088	16958134	chr2L	16962896	16962942	Doc	25	4808	6.5	8.5	7.5	2.9	4854	chr2L	16958088	intergenic	not near genes	chr2L	16960515	intergenic	not near genes	chr2L	16962942	intergenic	not near genes	chr2L_25_16960001	chr2L_16960001	RAL-40
596	chr2L	17167553	17167593	chr2L	17167814	17167832	pogo	14	259	6.0	6.0	6.0	2.0	279	chr2L	17167553	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167692	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167832	intron,intron	CG34106 +,beat-IIIa +	chr2L_14_17165001	chr2L_17165001	RAL-40
597	chr2L	17199141	17199150	chr2L	17200628	17200637	hobo	4	1487	13.0	6.5	9.8	0.4	1496	chr2L	17199141	intron	beat-IIIc -	chr2L	17199889	intron	beat-IIIc -	chr2L	17200637	intron	beat-IIIc -	chr2L_4_17195001	chr2L_17195001	RAL-40
598	chr2L	17199151	17199186	chr2L	17200627	17200673	hobo	17	1486	8.0	6.0	7.0	2.1	1522	chr2L	17199151	intron	beat-IIIc -	chr2L	17199912	intron	beat-IIIc -	chr2L	17200673	intron	beat-IIIc -	chr2L_17_17195001	chr2L_17195001	RAL-40
602	chr2L	17273187	17273208	chr2L	17277990	17278011	F-element	6	4802	9.0	8.5	8.8	0.6	4824	chr2L	17273187	intergenic	not near genes	chr2L	17275599	intergenic	not near genes	chr2L	17278011	intergenic	not near genes	chr2L_6_17275001	chr2L_17275001	RAL-40
603	chr2L	17273215	17273222	chr2L	17277976	17278010	F-element	7	4790	5.0	5.5	5.2	1.1	4795	chr2L	17273215	intergenic	not near genes	chr2L	17275612	intergenic	not near genes	chr2L	17278010	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-40
613	chr2L	17432008	17432040	chr2L	17432135	17432167	1360	10	127	0.0	4.0	2.0	3.3	159	chr2L	17432008	intron	Dif -	chr2L	17432088	intron	Dif -	chr2L	17432167	intron	Dif -	chr2L_10_17430001	chr2L_17430001	RAL-40
619	chr2L	17687498	17687515	chr2L	17692263	17692280	F-element	7	4765	7.5	6.0	6.8	0.9	4782	chr2L	17687498	intron	CadN -	chr2L	17689889	intron	CadN -	chr2L	17692280	intron	CadN -	chr2L_7_17685001	chr2L_17685001	RAL-40
621	chr2L	17727850	17727859	chr2L	17729337	17729344	hobo	4	1486	9.5	10.5	10.0	0.4	1494	chr2L	17727850	intron	CadN -	chr2L	17728597	intron	CadN -	chr2L	17729344	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-40
622	chr2L	17727868	17727878	chr2L	17729335	17729362	hobo	4	1476	5.0	10.5	7.8	0.5	1494	chr2L	17727868	intron	CadN -	chr2L	17728615	intron	CadN -	chr2L	17729362	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-40
624	chr2L	17819909	17819949	chr2L	17825132	17825172	copia	19	5221	7.0	7.5	7.2	2.3	5263	chr2L	17819909	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825172	intron	CadN2 -	chr2L_19_17820001	chr2L_17820001	RAL-40
627	chr2L	17911955	17911987	chr2L	17914137	17914140	pogo	15	2191	6.0	3.5	4.8	2.6	2185	chr2L	17911955	intergenic	not near genes	chr2L	17913048	intergenic	not near genes	chr2L	17914140	intergenic	CG43271 -	chr2L_15_17910001	chr2L_17910001	RAL-40
628	chr2L	17951926	17951973	chr2L	17953413	17953460	hobo	23	1484	7.5	8.5	8.0	2.6	1534	chr2L	17951926	intergenic	CR44398 -,CR44397 -	chr2L	17952693	intergenic	not near genes	chr2L	17953460	intergenic	not near genes	chr2L_23_17950001	chr2L_17950001	RAL-40
631	chr2L	18051860	18051900	chr2L	18061024	18061037	roo	11	9163	7.5	7.0	7.2	1.3	9177	chr2L	18051860	intron	rdo +	chr2L	18056448	intron	rdo +	chr2L	18061037	intron	rdo +	chr2L_11_18055001	chr2L_18055001	RAL-40
640	chr2L	18408011	18408031	chr2L	18412815	18412835	Doc	11	4804	12.5	0.0	6.2	1.5	4824	chr2L	18408011	intergenic	not near genes	chr2L	18410423	intergenic	not near genes	chr2L	18412835	intergenic	not near genes	chr2L_11_18410001	chr2L_18410001	RAL-40
652	chr2L	19147363	19147401	chr2L	19154407	19154456	297	13	7051	7.0	8.0	7.5	1.5	7093	chr2L	19147363	intron	brat +	chr2L	19150910	intron	brat +	chr2L	19154456	intron	brat +	chr2L_13_19150001	chr2L_19150001	RAL-40
659	chr2L	19345010	19345045	chr2L	19357235	19357272	blood	10	12228	4.5	8.5	6.5	1.3	12262	chr2L	19345010	intron	dnt -	chr2L	19351141	intron	dnt -	chr2L	19357272	intron	dnt -	chr2L_10_19350001	chr2L_19350001	RAL-40
670	chr2L	19620080	19620127	chr2L	19621084	19621101	jockey	16	999	7.0	1.5	4.2	3.1	1021	chr2L	19620080	intron	Lar +	chr2L	19620590	intron	Lar +	chr2L	19621101	intron	Lar +	chr2L_16_19620001	chr2L_19620001	RAL-40
671	chr2L	19652551	19652600	chr2L	19674005	19674054	opus	30	21454	9.0	8.5	8.8	3.1	21503	chr2L	19652551	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674054	intron	Lar +	chr2L_30_19660001	chr2L_19660001	RAL-40
672	chr2L	19703519	19703560	chr2L	19712675	19712716	roo	25	9155	10.0	9.0	9.5	2.4	9197	chr2L	19703519	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712716	intron	Lar +	chr2L_25_19705001	chr2L_19705001	RAL-40
674	chr2L	19762787	19762838	chr2L	19763049	19763064	pogo	15	260	3.5	12.0	7.8	1.7	277	chr2L	19762787	exon	fbp -	chr2L	19762926	intron	fbp -	chr2L	19763064	intron	fbp -	chr2L_15_19760001	chr2L_19760001	RAL-40
678	chr2L	20005853	20005864	chr2L	20010949	20010960	flea	13	5096	17.0	10.0	13.5	0.9	5107	chr2L	20005853	intron	CG43861 -	chr2L	20008406	intron	CG43861 -	chr2L	20010960	intron	CG43861 -	chr2L_13_20005001	chr2L_20005001	RAL-40
679	chr2L	20005866	20005899	chr2L	20010947	20010995	flea	15	5095	8.5	9.5	9.0	1.5	5129	chr2L	20005866	intron	CG43861 -	chr2L	20008430	intron	CG43861 -	chr2L	20010995	intron	CG43861 -	chr2L_15_20005001	chr2L_20005001	RAL-40
684	chr2L	20272096	20272144	chr2L	20282827	20282865	copia	17	10729	9.0	9.5	9.2	1.7	10769	chr2L	20272096	intergenic	not near genes	chr2L	20277480	intergenic	not near genes	chr2L	20282865	intergenic	not near genes	chr2L_17_20275001	chr2L_20275001	RAL-40
686	chr2L	20303160	20303187	chr2L	20310642	20310675	blood	6	7487	0.0	11.5	5.8	0.9	7515	chr2L	20303160	intergenic	not near genes	chr2L	20306918	intergenic	not near genes	chr2L	20310675	intergenic	not near genes	chr2L_6_20305001	chr2L_20305001	RAL-40
690	chr2L	20372207	20372246	chr2L	20372468	20372507	pogo	25	260	1.0	6.0	3.5	5.6	300	chr2L	20372207	intergenic	Ugt37a1 -	chr2L	20372357	intergenic	Ugt37a1 -	chr2L	20372507	exon	Ugt37a1 -	chr2L_25_20370001	chr2L_20370001	RAL-40
697	chr2L	20568644	20568685	chr2L	20569054	20569095	X-element	15	408	7.5	8.5	8.0	1.7	451	chr2L	20568644	intron	CR45347 +	chr2L	20568870	intron	CR45347 +	chr2L	20569095	intron	CR45347 +	chr2L_15_20565001	chr2L_20565001	RAL-40
698	chr2L	20576200	20576236	chr2L	20583688	20583721	blood	12	7478	9.5	5.5	7.5	1.4	7521	chr2L	20576200	intergenic	CR45347 +	chr2L	20579960	intergenic	not near genes	chr2L	20583721	3` UTR	CR44909 -	chr2L_12_20575001	chr2L_20575001	RAL-40
699	chr2L	20576237	20576249	chr2L	20583687	20583726	blood	5	7471	7.5	5.0	6.2	0.7	7489	chr2L	20576237	intergenic	not near genes	chr2L	20579982	intergenic	not near genes	chr2L	20583726	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-40
700	chr2L	20639480	20639487	chr2L	20639776	20639783	INE-1	5	296	12.5	5.5	9.0	0.5	303	chr2L	20639480	intergenic	not near genes	chr2L	20639632	intergenic	CG31680 +	chr2L	20639783	intergenic	CG31680 +	chr2L_5_20635001	chr2L_20635001	RAL-40
701	chr2L	20639489	20639531	chr2L	20639774	20639822	INE-1	10	289	3.5	5.5	4.5	1.8	333	chr2L	20639489	intergenic	not near genes	chr2L	20639656	intergenic	CG31680 +	chr2L	20639822	intergenic	CG31680 +	chr2L_10_20635001	chr2L_20635001	RAL-40
704	chr2L	20835789	20835841	chr2L	20836526	20836578	Quasimodo	28	737	3.5	3.5	3.5	6.2	789	chr2L	20835789	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836578	intergenic	Spn38F -	chr2L_28_20835001	chr2L_20835001	RAL-40
705	chr2L	20891518	20891544	chr2L	20896639	20896665	jockey	17	5119	4.5	9.0	6.8	2.2	5147	chr2L	20891518	intron,intron	CG43739 -,sky -	chr2L	20894092	intron,intron	CG43739 -,sky -	chr2L	20896665	intron,intron	CG43739 -,sky -	chr2L_17_20890001	chr2L_20890001	RAL-40
706	chr2L	20901439	20901483	chr2L	20902623	20902642	1360	6	1175	3.0	6.0	4.5	1.1	1203	chr2L	20901439	intron,intron	CG43739 -,sky -	chr2L	20902040	intron,intron	CG43739 -,sky -	chr2L	20902642	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	RAL-40
713	chr2L	20976632	20976672	chr2L	20981467	20981502	X-element	18	4833	6.5	12.0	9.2	1.8	4870	chr2L	20976632	intron	CG42238 -	chr2L	20979067	intron	CG42238 -	chr2L	20981502	intron	CG42238 -	chr2L_18_20975001	chr2L_20975001	RAL-40
715	chr2L	21020261	21020278	chr2L	21023952	21023955	NOF	4	3689	8.5	8.0	8.2	0.4	3694	chr2L	21020261	intron	CG42238 -	chr2L	21022108	intron	CG42238 -	chr2L	21023955	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-40
716	chr2L	21020280	21020292	chr2L	21023951	21023989	NOF	8	3686	6.5	7.5	7.0	1.0	3709	chr2L	21020280	intron	CG42238 -	chr2L	21022134	intron	CG42238 -	chr2L	21023989	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	RAL-40
717	chr2L	21041119	21041165	chr2L	21049398	21049419	Tirant	25	8276	7.0	8.5	7.8	2.8	8300	chr2L	21041119	intron	CG42238 -	chr2L	21045269	intron	CG42238 -	chr2L	21049419	intron	CG42238 -	chr2L_25_21045001	chr2L_21045001	RAL-40
722	chr2L	21347551	21347576	chr2L	21355027	21355067	blood	12	7485	6.0	9.0	7.5	1.4	7516	chr2L	21347551	intron	Tsp39D +	chr2L	21351309	intron	Tsp39D +	chr2L	21355067	intron	Tsp39D +	chr2L_12_21350001	chr2L_21350001	RAL-40
724	chr2L	21597023	21597056	chr2L	21604787	21604810	roo	18	7763	4.5	12.0	8.2	2.0	7787	chr2L	21597023	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604810	intergenic	not near genes	chr2L_18_21600001	chr2L_21600001	RAL-40
726	chr2L	21691807	21691848	chr2L	21698297	21698329	Burdock	16	6487	7.5	2.5	5.0	2.7	6522	chr2L	21691807	intron	CG31619 +	chr2L	21695068	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_16_21695001	chr2L_21695001	RAL-40
737	chr2L	21981668	21981711	chr2L	21990853	21990893	roo	24	9183	11.5	8.5	10.0	2.2	9225	chr2L	21981668	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990893	exon	CG2528 -	chr2L_24_21985001	chr2L_21985001	RAL-40
743	chr2L	22258602	22258647	chr2L	22260741	22260791	G6	23	2144	8.0	7.0	7.5	2.7	2189	chr2L	22258602	intergenic	Tif-IA +	chr2L	22259696	intergenic	not near genes	chr2L	22260791	intergenic	not near genes	chr2L_23_22255001	chr2L_22255001	RAL-40
747	chr2L	22548926	22548940	chr2L	22550154	22550184	1360	11	1241	1.5	15.5	8.5	1.2	1258	chr2L	22548926	intergenic	CG17490 +	chr2L	22549555	intergenic	not near genes	chr2L	22550184	intergenic	CG17493 +	chr2L_11_22545001	chr2L_22545001	RAL-40
748	chr2L	22581953	22581999	chr2L	22583762	22583808	S-element	19	1808	9.5	7.5	8.5	2.0	1855	chr2L	22581953	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583808	intron	CG17494 +	chr2L_19_22580001	chr2L_22580001	RAL-40
749	chr2L	22679803	22679826	chr2L	22684564	22684612	F-element	9	4777	8.5	6.0	7.2	1.1	4809	chr2L	22679803	intron	CG40006 -	chr2L	22682208	intron	CG40006 -	chr2L	22684612	intron	CG40006 -	chr2L_9_22680001	chr2L_22680001	RAL-40
752	chr2R	469969	469981	chr2R	473195	473242	F-element	5	3249	0.5	6.0	3.2	1.2	3273	chr2R	469969	intergenic	not near genes	chr2R	471606	intergenic	not near genes	chr2R	473242	intergenic	not near genes	chr2R_5_470001	chr2R_470001	RAL-40
753	chr2R	529322	529350	chr2R	537959	537979	Max-element	7	8639	5.0	6.0	5.5	1.1	8657	chr2R	529322	intron	CG40378 +	chr2R	533650	intron	CG40378 +	chr2R	537979	intron	CG40378 +	chr2R_7_530001	chr2R_530001	RAL-40
754	chr2R	1082366	1082385	chr2R	1087135	1087143	Doc	12	4779	4.5	8.0	6.2	1.7	4777	chr2R	1082366	intron	rl +	chr2R	1084754	intron	rl +	chr2R	1087143	intron	rl +	chr2R_12_1080001	chr2R_1080001	RAL-40
755	chr2R	1516585	1516602	chr2R	1521333	1521350	1731	22	4748	61.0	48.0	54.5	0.4	4765	chr2R	1516585	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521350	5` UTR	Maf1 -	chr2R_22_1515001	chr2R_1515001	RAL-40
758	chr2R	2498966	2499016	chr2R	2508133	2508183	roo	24	9166	7.5	9.0	8.2	2.6	9217	chr2R	2498966	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508183	intron	MFS17 -	chr2R_24_2500001	chr2R_2500001	RAL-40
759	chr2R	1373049	1373067	chr2R	2589327	2589345	Cr1a	10	1216278	28.5	35.5	32.0	0.3	1216296	chr2R	1373049	intron	l(2)41Ab +	chr2R	1981197	intron	CG17684 -	chr2R	2589345	intergenic	not near genes	chr2R_10_1980001	chr2R_1980001	RAL-40
761	chr2R	3144067	3144110	chr2R	3393365	3393408	Doc	9	249294	24.5	35.5	30.0	0.3	249341	chr2R	3144067	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393408	intergenic	not near genes	chr2R_9_3265001	chr2R_3265001	RAL-40
764	chr2R	3526629	3526640	chr2R	3531379	3531385	F-element	4	4749	6.5	6.0	6.2	0.6	4756	chr2R	3526629	intergenic	not near genes	chr2R	3529007	intergenic	not near genes	chr2R	3531385	intergenic	not near genes	chr2R_4_3525001	chr2R_3525001	RAL-40
765	chr2R	3532602	3532643	chr2R	3536065	3536106	Doc	12	3463	3.5	5.5	4.5	2.2	3504	chr2R	3532602	intergenic	not near genes	chr2R	3534354	intergenic	not near genes	chr2R	3536106	intergenic	not near genes	chr2R_12_3530001	chr2R_3530001	RAL-40
782	chr2R	5417972	5418024	chr2R	5420624	5420676	Burdock	24	2651	5.0	3.5	4.2	4.6	2704	chr2R	5417972	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420676	intron	laccase2 +	chr2R_24_5415001	chr2R_5415001	RAL-40
788	chr2R	5869257	5869309	chr2R	5874353	5874395	flea	19	5094	5.5	7.0	6.2	2.6	5138	chr2R	5869257	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874395	intergenic	not near genes	chr2R_19_5870001	chr2R_5870001	RAL-40
791	chr2R	5902138	5902191	chr2R	5909717	5909770	17.6	18	7579	6.0	9.0	7.5	2.1	7632	chr2R	5902138	intron	CG43366 +	chr2R	5905954	intron	CG43366 +	chr2R	5909770	intron	CG43366 +	chr2R_18_5905001	chr2R_5905001	RAL-40
793	chr2R	6096722	6096729	chr2R	6101910	6101922	BS	4	5193	9.0	4.5	6.8	0.5	5200	chr2R	6096722	intron	EcR -	chr2R	6099322	intron	EcR -	chr2R	6101922	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-40
798	chr2R	6494510	6494546	chr2R	6499292	6499328	F-element	15	4781	4.0	3.5	3.8	3.1	4818	chr2R	6494510	intergenic	not near genes	chr2R	6496919	intergenic	not near genes	chr2R	6499328	intergenic	not near genes	chr2R_15_6495001	chr2R_6495001	RAL-40
802	chr2R	6579752	6579804	chr2R	6584858	6584909	flea	27	5106	3.5	2.0	2.8	7.1	5157	chr2R	6579752	intron	jing +	chr2R	6582330	intron	jing +	chr2R	6584909	intron	jing +	chr2R_27_6580001	chr2R_6580001	RAL-40
811	chr2R	6952152	6952183	chr2R	6959752	6959783	opus	8	7600	7.5	7.5	7.5	0.9	7631	chr2R	6952152	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959783	intron,intron	mim -,CheB42c -	chr2R_8_6955001	chr2R_6955001	RAL-40
817	chr2R	7196553	7196589	chr2R	7201348	7201376	F-element	17	4794	8.0	0.5	4.2	3.3	4823	chr2R	7196553	intron	pk +	chr2R	7198964	intron	pk +	chr2R	7201376	intron	pk +	chr2R_17_7195001	chr2R_7195001	RAL-40
818	chr2R	7209844	7209871	chr2R	7217595	7217652	roo	10	7776	0.0	1.0	0.5	6.7	7808	chr2R	7209844	intron	pk +	chr2R	7213748	intron	pk +	chr2R	7217652	intron	pk +	chr2R_10_7210001	chr2R_7210001	RAL-40
819	chr2R	7235803	7235843	chr2R	7240915	7240917	jockey	12	5107	10.5	5.5	8.0	1.3	5114	chr2R	7235803	intergenic	not near genes	chr2R	7238360	intergenic	not near genes	chr2R	7240917	intergenic	not near genes	chr2R_12_7235001	chr2R_7235001	RAL-40
822	chr2R	7434879	7434911	chr2R	7439200	7439232	Juan	17	4321	12.5	10.0	11.2	1.4	4353	chr2R	7434879	intergenic	so +	chr2R	7437056	intergenic	not near genes	chr2R	7439232	intergenic	not near genes	chr2R_17_7435001	chr2R_7435001	RAL-40
824	chr2R	7608390	7608399	chr2R	7613613	7613622	I-element	6	5223	15.0	5.5	10.2	0.5	5232	chr2R	7608390	intron	CG1358 -	chr2R	7611006	intron	CG1358 -	chr2R	7613622	intron	CG1358 -	chr2R_6_7610001	chr2R_7610001	RAL-40
825	chr2R	7608401	7608437	chr2R	7613609	7613645	I-element	20	5216	6.5	5.5	6.0	2.9	5244	chr2R	7608401	intron	CG1358 -	chr2R	7611023	intron	CG1358 -	chr2R	7613645	intron	CG1358 -	chr2R_20_7610001	chr2R_7610001	RAL-40
831	chr2R	7815652	7815697	chr2R	7822141	7822175	Burdock	21	6487	8.0	4.5	6.2	2.9	6523	chr2R	7815652	intergenic	CG1882 +	chr2R	7818914	intergenic	not near genes	chr2R	7822175	3` UTR	cathD -	chr2R_21_7815001	chr2R_7815001	RAL-40
832	chr2R	7862213	7862246	chr2R	7867345	7867377	flea	8	5131	2.0	5.0	3.5	1.8	5164	chr2R	7862213	intron	Dgk -	chr2R	7864795	intron	Dgk -	chr2R	7867377	intron	Dgk -	chr2R_8_7860001	chr2R_7860001	RAL-40
833	chr2R	7869173	7869208	chr2R	7873979	7874014	Doc	18	4803	12.5	4.5	8.5	1.9	4841	chr2R	7869173	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7874014	intron	Dgk -	chr2R_18_7870001	chr2R_7870001	RAL-40
847	chr2R	8160917	8160931	chr2R	8161027	8161041	1360	6	108	6.0	11.0	8.5	0.6	124	chr2R	8160917	exon	CG8708 -	chr2R	8160979	intron	CG8708 -	chr2R	8161041	intron	CG8708 -	chr2R_6_8160001	chr2R_8160001	RAL-40
848	chr2R	8160932	8160945	chr2R	8161024	8161055	1360	9	106	4.0	10.5	7.2	1.1	123	chr2R	8160932	intron	CG8708 -	chr2R	8160994	intron	CG8708 -	chr2R	8161055	intron	CG8708 -	chr2R_9_8160001	chr2R_8160001	RAL-40
851	chr2R	8330850	8330870	chr2R	8331356	8331376	roo	15	506	7.0	9.5	8.2	1.6	526	chr2R	8330850	intron	pdm3 +	chr2R	8331113	intron	pdm3 +	chr2R	8331376	intron	pdm3 +	chr2R_15_8330001	chr2R_8330001	RAL-40
852	chr2R	8330871	8330895	chr2R	8331351	8331361	roo	15	499	2.5	9.0	5.8	2.2	490	chr2R	8330871	intron	pdm3 +	chr2R	8331116	intron	pdm3 +	chr2R	8331361	intron	pdm3 +	chr2R_15_8330001	chr2R_8330001	RAL-40
854	chr2R	8398201	8398244	chr2R	8402996	8403030	Doc	7	4798	5.0	3.0	4.0	1.4	4829	chr2R	8398201	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403030	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-40
862	chr2R	8722745	8722789	chr2R	8723006	8723044	pogo	19	258	6.0	5.0	5.5	2.9	299	chr2R	8722745	intron	CG14767 -	chr2R	8722894	intron	CG14767 -	chr2R	8723044	intron	CG14767 -	chr2R_19_8720001	chr2R_8720001	RAL-40
864	chr2R	8777927	8777929	chr2R	8784146	8784153	diver	5	6222	8.0	15.0	11.5	0.4	6226	chr2R	8777927	intergenic	not near genes	chr2R	8781040	intergenic	not near genes	chr2R	8784153	intergenic	not near genes	chr2R_5_8780001	chr2R_8780001	RAL-40
865	chr2R	8777930	8777944	chr2R	8784139	8784164	diver	13	6221	4.5	14.0	9.2	1.3	6234	chr2R	8777930	intergenic	not near genes	chr2R	8781047	intergenic	not near genes	chr2R	8784164	intergenic	not near genes	chr2R_13_8780001	chr2R_8780001	RAL-40
873	chr2R	9151281	9151324	chr2R	9157771	9157814	Burdock	24	6490	8.5	9.5	9.0	2.4	6533	chr2R	9151281	exon	CG30345 +	chr2R	9154548	intergenic	not near genes	chr2R	9157814	intergenic	CG8008 -	chr2R_24_9150001	chr2R_9150001	RAL-40
875	chr2R	9212682	9212707	chr2R	9213188	9213213	roo	8	506	10.5	11.0	10.8	0.7	531	chr2R	9212682	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213213	5` UTR	CR45309 +	chr2R_8_9210001	chr2R_9210001	RAL-40
876	chr2R	9212712	9212720	chr2R	9213184	9213223	roo	5	491	8.0	11.0	9.5	0.5	511	chr2R	9212712	intergenic	CR45309 +	chr2R	9212968	intergenic	CR45309 +	chr2R	9213223	5` UTR	CR45309 +	chr2R_5_9210001	chr2R_9210001	RAL-40
878	chr2R	9352252	9352257	chr2R	9361422	9361424	roo	6	9168	7.0	21.0	14.0	0.4	9172	chr2R	9352252	intron	CG13954 -	chr2R	9356838	intron	CG13954 -	chr2R	9361424	intron	CG13954 -	chr2R_6_9355001	chr2R_9355001	RAL-40
881	chr2R	9480056	9480105	chr2R	9490607	9490655	roo	20	10551	8.0	8.0	8.0	2.2	10599	chr2R	9480056	intergenic	not near genes	chr2R	9485356	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_20_9485001	chr2R_9485001	RAL-40
884	chr2R	9726602	9726639	chr2R	9734169	9734212	17.6	15	7573	7.0	10.0	8.5	1.6	7610	chr2R	9726602	intron	sqa -	chr2R	9730407	intron	sqa -	chr2R	9734212	intron	sqa -	chr2R_15_9730001	chr2R_9730001	RAL-40
887	chr2R	9871039	9871065	chr2R	9871542	9871548	roo	6	498	8.0	13.5	10.8	0.5	509	chr2R	9871039	intron	cbx -	chr2R	9871294	intron	cbx -	chr2R	9871548	intron,5` UTR	cbx -,CG18446 +	chr2R_6_9870001	chr2R_9870001	RAL-40
890	chr2R	9945424	9945474	chr2R	9945639	9945662	BS	13	211	5.5	7.5	6.5	1.7	238	chr2R	9945424	intron	Mef2 -	chr2R	9945543	intron	Mef2 -	chr2R	9945662	intron	Mef2 -	chr2R_13_9945001	chr2R_9945001	RAL-40
891	chr2R	10005836	10005881	chr2R	10007011	10007034	1360	16	1172	6.0	6.5	6.2	2.2	1198	chr2R	10005836	intron	Pka-R2 -	chr2R	10006435	intron	Pka-R2 -	chr2R	10007034	intron	Pka-R2 -	chr2R_16_10005001	chr2R_10005001	RAL-40
898	chr2R	10176862	10176909	chr2R	10186049	10186086	roo	22	9186	9.5	6.5	8.0	2.4	9224	chr2R	10176862	intron	KCNQ -	chr2R	10181474	intron	KCNQ -	chr2R	10186086	intron	KCNQ -	chr2R_22_10180001	chr2R_10180001	RAL-40
919	chr2R	10585575	10585590	chr2R	10594160	10594163	Tirant	5	8580	5.0	2.5	3.8	1.0	8588	chr2R	10585575	intron	psq +	chr2R	10589869	intron	psq +	chr2R	10594163	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-40
921	chr2R	10622332	10622339	chr2R	10637117	10637124	mdg1	4	14785	14.0	1.5	7.8	0.5	14792	chr2R	10622332	intron	CG11883 +	chr2R	10629728	intron	CG11883 +	chr2R	10637124	intron	CG11883 +	chr2R_4_10625001	chr2R_10625001	RAL-40
931	chr2R	10948022	10948032	chr2R	10955588	10955603	17.6	4	7566	4.0	7.5	5.8	0.6	7581	chr2R	10948022	intergenic	not near genes	chr2R	10951812	intergenic	not near genes	chr2R	10955603	intergenic	not near genes	chr2R_4_10950001	chr2R_10950001	RAL-40
932	chr2R	10948042	10948062	chr2R	10955582	10955609	17.6	11	7553	3.5	5.5	4.5	2.0	7567	chr2R	10948042	intergenic	not near genes	chr2R	10951826	intergenic	not near genes	chr2R	10955609	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	RAL-40
934	chr2R	10979647	10979658	chr2R	10980136	10980148	297	4	489	5.0	4.0	4.5	0.7	501	chr2R	10979647	intergenic	not near genes	chr2R	10979898	intergenic	not near genes	chr2R	10980148	intergenic	not near genes	chr2R_4_10975001	chr2R_10975001	RAL-40
935	chr2R	11009797	11009842	chr2R	11018991	11019016	roo	18	9188	6.0	8.0	7.0	2.2	9219	chr2R	11009797	intron	luna -	chr2R	11014406	intron	luna -	chr2R	11019016	intron	luna -	chr2R_18_11010001	chr2R_11010001	RAL-40
936	chr2R	11019891	11019908	chr2R	11024941	11024994	jockey	6	5080	3.0	3.5	3.2	1.4	5103	chr2R	11019891	intron	luna -	chr2R	11022442	intron	luna -	chr2R	11024994	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-40
943	chr2R	11207799	11207848	chr2R	11208012	11208061	BS	20	210	9.5	12.5	11.0	1.7	262	chr2R	11207799	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208061	intron	shn +	chr2R_20_11205001	chr2R_11205001	RAL-40
946	chr2R	11297619	11297641	chr2R	11301963	11301985	flea	8	4343	6.0	0.5	3.2	1.9	4366	chr2R	11297619	intergenic	CG42336 -	chr2R	11299802	intergenic	not near genes	chr2R	11301985	5` UTR	CG7741 +	chr2R_8_11295001	chr2R_11295001	RAL-40
948	chr2R	11415496	11415551	chr2R	11418665	11418715	opus	19	3159	4.0	6.5	5.2	3.1	3219	chr2R	11415496	intron	Drip -	chr2R	11417106	intron	Drip -	chr2R	11418715	intron	Drip -	chr2R_19_11415001	chr2R_11415001	RAL-40
950	chr2R	11472633	11472679	chr2R	11473848	11473896	pogo	26	1216	8.0	5.0	6.5	3.5	1263	chr2R	11472633	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473896	intergenic	not near genes	chr2R_26_11470001	chr2R_11470001	RAL-40
980	chr2R	12481146	12481165	chr2R	12482938	12482943	roo	5	1797	5.5	6.0	5.8	0.7	1797	chr2R	12481146	exon	Dh44-R2 +	chr2R	12482044	intron	Dh44-R2 +	chr2R	12482943	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	RAL-40
981	chr2R	12501717	12501723	chr2R	12503864	12503864	Rt1c	4	2156	2.5	8.5	5.5	0.6	2147	chr2R	12501717	intron	fdl -	chr2R	12502790	intron	fdl -	chr2R	12503864	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-40
985	chr2R	12707499	12707548	chr2R	12715885	12715931	roo	19	8386	5.0	6.5	5.8	2.8	8432	chr2R	12707499	intron	CG42663 +	chr2R	12711715	intron	CG42663 +	chr2R	12715931	intron	CG42663 +	chr2R_19_12710001	chr2R_12710001	RAL-40
988	chr2R	12789285	12789323	chr2R	12797660	12797704	roo	9	8372	6.0	5.5	5.8	1.3	8419	chr2R	12789285	intron,3` UTR	sca +,CR45137 -	chr2R	12793494	intron,intron	sca +,CR45137 -	chr2R	12797704	intron,3` UTR	sca +,CR45137 -	chr2R_9_12790001	chr2R_12790001	RAL-40
991	chr2R	12819445	12819478	chr2R	12824526	12824561	jockey	5	5071	5.0	7.5	6.2	0.7	5116	chr2R	12819445	intergenic	not near genes	chr2R	12822003	intergenic	not near genes	chr2R	12824561	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-40
1000	chr2R	13136823	13136868	chr2R	13141641	13141671	Doc	20	4817	6.0	6.5	6.2	2.8	4848	chr2R	13136823	exon	Cap-G +	chr2R	13139247	intron	Cap-G +	chr2R	13141671	intron	Cap-G +	chr2R_20_13135001	chr2R_13135001	RAL-40
1014	chr2R	13580479	13580524	chr2R	13580849	13580894	jockey	18	368	3.0	7.0	5.0	3.0	415	chr2R	13580479	3` UTR	CG6191 -	chr2R	13580686	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580894	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_18_13580001	chr2R_13580001	RAL-40
1019	chr2R	13728114	13728161	chr2R	13735791	13735838	opus	24	7676	6.0	4.0	5.0	4.0	7724	chr2R	13728114	intron	fas +	chr2R	13731976	intron	fas +	chr2R	13735838	intron	fas +	chr2R_24_13730001	chr2R_13730001	RAL-40
1027	chr2R	13905587	13905633	chr2R	13907589	13907610	Rt1a	12	1996	10.0	2.0	6.0	1.7	2023	chr2R	13905587	intron	shot -	chr2R	13906598	intron	shot -	chr2R	13907610	intron	shot -	chr2R_12_13905001	chr2R_13905001	RAL-40
1047	chr2R	14394213	14394254	chr2R	14399022	14399031	Doc	9	4805	11.5	6.5	9.0	0.9	4818	chr2R	14394213	intergenic	not near genes	chr2R	14396622	intergenic	not near genes	chr2R	14399031	intergenic	not near genes	chr2R_9_14395001	chr2R_14395001	RAL-40
1052	chr2R	14467288	14467326	chr2R	14476466	14476504	roo	22	9175	2.5	5.0	3.8	4.6	9216	chr2R	14467288	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476504	5` UTR	CR44462 +	chr2R_22_14470001	chr2R_14470001	RAL-40
1053	chr2R	14497367	14497417	chr2R	14498550	14498603	1360	10	1183	0.0	5.0	2.5	2.9	1236	chr2R	14497367	3` UTR	Cpsf160 -	chr2R	14497985	intron	Cpsf160 -	chr2R	14498603	3` UTR	Cpsf160 -	chr2R_10_14495001	chr2R_14495001	RAL-40
1065	chr2R	14889194	14889216	chr2R	14897822	14897844	Max-element	22	8627	15.0	0.5	7.8	2.5	8650	chr2R	14889194	intergenic	Cyp6a8 -	chr2R	14893519	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_22_14890001	chr2R_14890001	RAL-40
1078	chr2R	15015459	15015488	chr2R	15022888	15022932	mdg1	9	7435	3.0	6.5	4.8	1.6	7473	chr2R	15015459	intron	hbs +	chr2R	15019196	intron	hbs +	chr2R	15022932	intron	hbs +	chr2R_9_15015001	chr2R_15015001	RAL-40
1081	chr2R	15084960	15085006	chr2R	15092029	15092075	297	21	7068	4.5	7.0	5.8	3.1	7115	chr2R	15084960	intergenic	not near genes	chr2R	15088518	intergenic	not near genes	chr2R	15092075	5` UTR	CR44457 +	chr2R_21_15085001	chr2R_15085001	RAL-40
1083	chr2R	15119296	15119350	chr2R	15127797	15127851	Tirant	15	8499	9.5	6.0	7.8	1.7	8555	chr2R	15119296	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127851	intron	chn +	chr2R_15_15120001	chr2R_15120001	RAL-40
1111	chr2R	16539629	16539650	chr2R	16544856	16544867	copia	8	5226	9.0	0.5	4.8	1.4	5238	chr2R	16539629	intergenic	not near genes	chr2R	16542248	intergenic	not near genes	chr2R	16544867	intergenic	not near genes	chr2R_8_16540001	chr2R_16540001	RAL-40
1125	chr2R	17147233	17147263	chr2R	17152272	17152314	jockey	12	5048	9.5	7.5	8.5	1.3	5081	chr2R	17147233	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152314	intergenic	not near genes	chr2R_12_17145001	chr2R_17145001	RAL-40
1126	chr2R	17176356	17176368	chr2R	17182566	17182578	diver	5	6210	0.0	9.5	4.8	0.9	6222	chr2R	17176356	intergenic	not near genes	chr2R	17179467	intergenic	not near genes	chr2R	17182578	intergenic	not near genes	chr2R_5_17175001	chr2R_17175001	RAL-40
1127	chr2R	17176369	17176386	chr2R	17182552	17182596	diver	10	6207	0.0	6.5	3.2	2.4	6227	chr2R	17176369	intergenic	not near genes	chr2R	17179482	intergenic	not near genes	chr2R	17182596	intergenic	not near genes	chr2R_10_17175001	chr2R_17175001	RAL-40
1130	chr2R	17236502	17236539	chr2R	17241712	17241720	copia	15	5218	5.0	6.0	5.5	2.3	5218	chr2R	17236502	intron	mbl +	chr2R	17239111	intron	mbl +	chr2R	17241720	intron	mbl +	chr2R_15_17235001	chr2R_17235001	RAL-40
1134	chr2R	17485897	17485950	chr2R	17490687	17490738	F-element	16	4788	7.0	4.0	5.5	2.5	4841	chr2R	17485897	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488318	intron	NT5E-2 +	chr2R	17490738	intron	NT5E-2 +	chr2R_16_17485001	chr2R_17485001	RAL-40
1141	chr2R	17782342	17782390	chr2R	17783565	17783613	pogo	15	1223	6.5	7.5	7.0	1.9	1271	chr2R	17782342	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783613	intergenic	mir-31a -	chr2R_15_17780001	chr2R_17780001	RAL-40
1142	chr2R	17784006	17784052	chr2R	17784267	17784313	pogo	22	258	9.0	4.5	6.8	2.8	307	chr2R	17784006	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784313	intergenic	mir-31a -	chr2R_22_17780001	chr2R_17780001	RAL-40
1150	chr2R	18045651	18045699	chr2R	18046023	18046071	jockey	30	371	6.5	10.5	8.5	3.2	420	chr2R	18045651	intergenic	not near genes	chr2R	18045861	intergenic	not near genes	chr2R	18046071	intergenic	CG5767 -	chr2R_30_18045001	chr2R_18045001	RAL-40
1154	chr2R	18111663	18111710	chr2R	18115551	18115598	F-element	11	3888	12.5	8.0	10.2	1.0	3935	chr2R	18111663	intergenic	not near genes	chr2R	18113630	intergenic	not near genes	chr2R	18115598	intergenic	not near genes	chr2R_11_18110001	chr2R_18110001	RAL-40
1159	chr2R	18358374	18358417	chr2R	18372606	18372649	roo	24	14232	8.0	8.0	8.0	2.7	14275	chr2R	18358374	intergenic	not near genes	chr2R	18365512	intergenic	not near genes	chr2R	18372649	intergenic	not near genes	chr2R_24_18365001	chr2R_18365001	RAL-40
1165	chr2R	18487819	18487854	chr2R	18495289	18495344	blood	8	7480	1.0	6.5	3.8	1.7	7525	chr2R	18487819	intron	CG30116 -	chr2R	18491582	intron	CG30116 -	chr2R	18495344	intron	CG30116 -	chr2R_8_18490001	chr2R_18490001	RAL-40
1167	chr2R	18575797	18575830	chr2R	18581984	18582038	3S18	15	6195	1.5	3.5	2.5	4.3	6241	chr2R	18575797	intron	GEFmeso -	chr2R	18578918	intron	GEFmeso -	chr2R	18582038	intron	GEFmeso -	chr2R_15_18575001	chr2R_18575001	RAL-40
1168	chr2R	18590853	18590867	chr2R	18600025	18600039	roo	5	9172	6.5	6.0	6.2	0.7	9186	chr2R	18590853	intron	GEFmeso -	chr2R	18595446	intron	GEFmeso -	chr2R	18600039	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-40
1169	chr2R	18590868	18590901	chr2R	18600019	18600037	roo	9	9156	3.0	4.5	3.8	1.9	9169	chr2R	18590868	intron	GEFmeso -	chr2R	18595452	intron	GEFmeso -	chr2R	18600037	intron	GEFmeso -	chr2R_9_18595001	chr2R_18595001	RAL-40
1197	chr2R	19715837	19715857	chr2R	19723326	19723343	blood	6	7486	16.0	8.5	12.2	0.5	7506	chr2R	19715837	intergenic	not near genes	chr2R	19719590	intergenic	not near genes	chr2R	19723343	intergenic	not near genes	chr2R_6_19715001	chr2R_19715001	RAL-40
1199	chr2R	19776576	19776623	chr2R	19779918	19779966	jockey	30	3341	6.5	7.0	6.8	3.8	3390	chr2R	19776576	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779966	intergenic	not near genes	chr2R_30_19775001	chr2R_19775001	RAL-40
1201	chr2R	19914828	19914870	chr2R	19922260	19922302	mdg1	18	7430	12.0	3.0	7.5	2.1	7474	chr2R	19914828	intergenic	not near genes	chr2R	19918565	intergenic	not near genes	chr2R	19922302	intergenic	not near genes	chr2R_18_19915001	chr2R_19915001	RAL-40
1202	chr2R	19957449	19957462	chr2R	19962630	19962679	copia	6	5196	3.0	2.0	2.5	1.7	5230	chr2R	19957449	intergenic	CG44623 +	chr2R	19960064	intergenic	not near genes	chr2R	19962679	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-40
1205	chr2R	20069217	20069254	chr2R	20071876	20071912	opus	16	2658	8.0	5.5	6.8	2.1	2695	chr2R	20069217	intergenic	not near genes	chr2R	20070564	intergenic	not near genes	chr2R	20071912	intergenic	not near genes	chr2R_16_20070001	chr2R_20070001	RAL-40
1207	chr2R	20088023	20088027	chr2R	20088151	20088151	1360	4	127	3.0	8.0	5.5	0.6	128	chr2R	20088023	intergenic	not near genes	chr2R	20088087	intergenic	not near genes	chr2R	20088151	intergenic	not near genes	chr2R_4_20085001	chr2R_20085001	RAL-40
1219	chr2R	20739427	20739474	chr2R	20744210	20744251	F-element	17	4783	5.5	5.0	5.2	2.7	4824	chr2R	20739427	intron	dpr +	chr2R	20741839	intron	dpr +	chr2R	20744251	intron	dpr +	chr2R_17_20740001	chr2R_20740001	RAL-40
1221	chr2R	20783294	20783331	chr2R	20788084	20788121	F-element	12	4791	3.0	6.0	4.5	2.2	4827	chr2R	20783294	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788121	intergenic	CG43666 -	chr2R_12_20785001	chr2R_20785001	RAL-40
1235	chr2R	21151098	21151145	chr2R	21153751	21153798	opus	22	2653	9.0	7.5	8.2	2.4	2700	chr2R	21151098	intron	CG30389 -	chr2R	21152448	intron	CG30389 -	chr2R	21153798	intron	CG30389 -	chr2R_22_21150001	chr2R_21150001	RAL-40
1249	chr2R	21738289	21738308	chr2R	21747439	21747488	roo	12	9164	3.0	3.0	3.0	3.0	9199	chr2R	21738289	intergenic	not near genes	chr2R	21742888	intergenic	not near genes	chr2R	21747488	intergenic	not near genes	chr2R_12_21740001	chr2R_21740001	RAL-40
1250	chr2R	21753070	21753115	chr2R	21753570	21753620	roo	25	503	8.0	6.0	7.0	3.1	550	chr2R	21753070	intergenic	not near genes	chr2R	21753345	intergenic	not near genes	chr2R	21753620	intergenic	not near genes	chr2R_25_21750001	chr2R_21750001	RAL-40
1252	chr2R	21809503	21809545	chr2R	21817762	21817805	roo	14	8260	1.5	8.0	4.8	2.4	8302	chr2R	21809503	intergenic	not near genes	chr2R	21813654	intergenic	not near genes	chr2R	21817805	intergenic	not near genes	chr2R_14_21810001	chr2R_21810001	RAL-40
1268	chr2R	22349679	22349719	chr2R	22351478	22351523	jockey	16	1802	9.0	9.5	9.2	1.6	1844	chr2R	22349679	intron	Liprin-gamma -	chr2R	22350601	intron	Liprin-gamma -	chr2R	22351523	intron	Liprin-gamma -	chr2R_16_22350001	chr2R_22350001	RAL-40
1269	chr2R	22360366	22360388	chr2R	22360819	22360824	jockey	10	451	11.5	3.5	7.5	1.2	458	chr2R	22360366	intron	Liprin-gamma -	chr2R	22360595	intron	Liprin-gamma -	chr2R	22360824	intron	Liprin-gamma -	chr2R_10_22360001	chr2R_22360001	RAL-40
1273	chr2R	22465300	22465322	chr2R	22465513	22465535	BS	15	213	9.5	8.0	8.8	1.5	235	chr2R	22465300	intron	CG10384 +	chr2R	22465418	intron	CG10384 +	chr2R	22465535	intron	CG10384 +	chr2R_15_22465001	chr2R_22465001	RAL-40
1275	chr2R	22525748	22525777	chr2R	22529323	22529352	jockey	5	3575	3.5	7.5	5.5	0.8	3604	chr2R	22525748	intron	px -	chr2R	22527550	intron	px -	chr2R	22529352	intron	px -	chr2R_5_22525001	chr2R_22525001	RAL-40
1276	chr2R	22525785	22525785	chr2R	22529303	22529338	jockey	4	3532	2.0	5.0	3.5	0.9	3553	chr2R	22525785	intron	px -	chr2R	22527562	intron	px -	chr2R	22529338	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-40
1279	chr2R	22580426	22580440	chr2R	22586590	22586604	diver	7	6164	9.0	7.5	8.2	0.8	6178	chr2R	22580426	intron	dnr1 -	chr2R	22583515	intron	dnr1 -	chr2R	22586604	intron	dnr1 -	chr2R_7_22580001	chr2R_22580001	RAL-40
1288	chr2R	22843033	22843045	chr2R	22845019	22845031	flea	6	1986	5.5	2.0	3.8	1.2	1998	chr2R	22843033	intergenic	CG9826 +	chr2R	22844032	intergenic	not near genes	chr2R	22845031	intergenic	not near genes	chr2R_6_22840001	chr2R_22840001	RAL-40
1317	chr2R	23529578	23529606	chr2R	23537149	23537161	412	7	7562	4.5	3.0	3.8	1.5	7583	chr2R	23529578	intron	bw -	chr2R	23533370	intron	bw -	chr2R	23537161	exon	bw -	chr2R_7_23530001	chr2R_23530001	RAL-40
1327	chr2R	23914284	23914331	chr2R	23921927	23921975	412	18	7639	3.5	1.0	2.2	5.6	7691	chr2R	23914284	exon	kcc +	chr2R	23918130	intron	kcc +	chr2R	23921975	exon	kcc +	chr2R_18_23915001	chr2R_23915001	RAL-40
1329	chr2R	24177214	24177265	chr2R	24184719	24184770	412	27	7502	9.5	9.5	9.5	2.6	7556	chr2R	24177214	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184770	3` UTR	Nop60B +	chr2R_27_24180001	chr2R_24180001	RAL-40
1332	chr2R	24353411	24353440	chr2R	24361793	24361822	roo	13	8381	12.5	4.0	8.2	1.4	8411	chr2R	24353411	intron,intron	bs +,CR44811 -	chr2R	24357616	intron,intron	bs +,CR44811 -	chr2R	24361822	intron,intron	bs +,CR44811 -	chr2R_13_24355001	chr2R_24355001	RAL-40
1340	chr2R	24647582	24647618	chr2R	24655145	24655182	412	20	7568	5.5	3.0	4.2	3.8	7600	chr2R	24647582	intergenic	not near genes	chr2R	24651382	intergenic	not near genes	chr2R	24655182	intergenic	not near genes	chr2R_20_24650001	chr2R_24650001	RAL-40
1341	chr2R	24727864	24727918	chr2R	24735392	24735420	mdg1	15	7521	3.5	6.0	4.8	2.6	7556	chr2R	24727864	intron	Mid1 -	chr2R	24731642	intron	Mid1 -	chr2R	24735420	intron	Mid1 -	chr2R_15_24730001	chr2R_24730001	RAL-40
1344	chr2R	24763611	24763643	chr2R	24765590	24765633	G2	9	1984	3.5	3.0	3.2	2.1	2022	chr2R	24763611	exon	CG3894 +	chr2R	24764622	intron	CG3894 +	chr2R	24765633	exon	CG3894 +	chr2R_9_24760001	chr2R_24760001	RAL-40
1354	chr2R	25141635	25141683	chr2R	25159345	25159385	roo	26	17708	7.0	9.5	8.2	2.8	17750	chr2R	25141635	intergenic	not near genes	chr2R	25150510	intergenic	not near genes	chr2R	25159385	intergenic	not near genes	chr2R_26_25150001	chr2R_25150001	RAL-40
1356	chr3L	110193	110238	chr3L	119380	119425	roo	21	9186	9.0	6.5	7.8	2.4	9232	chr3L	110193	intergenic	not near genes	chr3L	114809	intergenic	not near genes	chr3L	119425	intergenic	not near genes	chr3L_21_110001	chr3L_110001	RAL-40
1364	chr3L	402682	402718	chr3L	409741	409791	297	17	7067	6.0	9.0	7.5	2.0	7109	chr3L	402682	intergenic	not near genes	chr3L	406236	intergenic	not near genes	chr3L	409791	intergenic	not near genes	chr3L_17_405001	chr3L_405001	RAL-40
1372	chr3L	789893	789947	chr3L	790398	790452	roo	25	505	5.5	6.0	5.8	3.7	559	chr3L	789893	intergenic	not near genes	chr3L	790172	intergenic	not near genes	chr3L	790452	intergenic	not near genes	chr3L_25_790001	chr3L_790001	RAL-40
1374	chr3L	857986	858030	chr3L	866482	866506	Tirant	8	8489	8.0	5.0	6.5	1.1	8520	chr3L	857986	intergenic	not near genes	chr3L	862246	intergenic	not near genes	chr3L	866506	5` UTR	CG12502 +	chr3L_8_860001	chr3L_860001	RAL-40
1377	chr3L	925159	925177	chr3L	932605	932623	mdg1	6	7446	9.5	4.5	7.0	0.8	7464	chr3L	925159	intron	Glut1 +	chr3L	928891	intron	Glut1 +	chr3L	932623	intron	Glut1 +	chr3L_6_925001	chr3L_925001	RAL-40
1378	chr3L	925179	925207	chr3L	932600	932653	mdg1	16	7442	5.0	4.0	4.5	2.9	7474	chr3L	925179	intron	Glut1 +	chr3L	928916	intron	Glut1 +	chr3L	932653	intron	Glut1 +	chr3L_16_925001	chr3L_925001	RAL-40
1380	chr3L	939762	939797	chr3L	940898	940938	jockey	21	1139	7.5	8.5	8.0	2.3	1176	chr3L	939762	intron	Glut1 +	chr3L	940350	intron	Glut1 +	chr3L	940938	intron	Glut1 +	chr3L_21_940001	chr3L_940001	RAL-40
1383	chr3L	1047338	1047384	chr3L	1055170	1055196	412	4	7811	3.5	5.0	4.2	0.8	7858	chr3L	1047338	intron	bab1 -	chr3L	1051267	intron	bab1 -	chr3L	1055196	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-40
1388	chr3L	1154114	1154121	chr3L	1163284	1163291	roo	6	9170	16.5	5.5	11.0	0.5	9177	chr3L	1154114	intron	bab2 -	chr3L	1158702	intron	bab2 -	chr3L	1163291	intron	bab2 -	chr3L_6_1155001	chr3L_1155001	RAL-40
1389	chr3L	1154122	1154159	chr3L	1163281	1163329	roo	18	9168	6.5	5.0	5.8	2.6	9207	chr3L	1154122	intron	bab2 -	chr3L	1158726	intron	bab2 -	chr3L	1163329	intron	bab2 -	chr3L_18_1155001	chr3L_1155001	RAL-40
1392	chr3L	1219583	1219591	chr3L	1227336	1227344	412	5	7753	9.5	8.5	9.0	0.5	7761	chr3L	1219583	intron	mwh +	chr3L	1223464	intron	mwh +	chr3L	1227344	intron	mwh +	chr3L_5_1220001	chr3L_1220001	RAL-40
1393	chr3L	1219594	1219622	chr3L	1227327	1227340	412	12	7744	6.0	6.5	6.2	1.7	7746	chr3L	1219594	intron	mwh +	chr3L	1223467	intron	mwh +	chr3L	1227340	intron	mwh +	chr3L_12_1220001	chr3L_1220001	RAL-40
1398	chr3L	1424752	1424761	chr3L	1430024	1430033	Rt1a	8	5272	1.0	8.5	4.8	1.4	5281	chr3L	1424752	intron	Ptp61F -	chr3L	1427392	intron	Ptp61F -	chr3L	1430033	intron	Ptp61F -	chr3L_8_1425001	chr3L_1425001	RAL-40
1399	chr3L	1424769	1424772	chr3L	1430014	1430044	Rt1a	6	5266	1.0	7.0	4.0	1.2	5275	chr3L	1424769	intron	Ptp61F -	chr3L	1427406	intron	Ptp61F -	chr3L	1430044	intron	Ptp61F -	chr3L_6_1425001	chr3L_1425001	RAL-40
1401	chr3L	1505980	1506024	chr3L	1513597	1513641	17.6	19	7615	5.5	6.5	6.0	2.7	7661	chr3L	1505980	intron,intron	Psa +,cue -	chr3L	1509810	intron,intron	Psa +,cue -	chr3L	1513641	intron,intron	Psa +,cue -	chr3L_19_1505001	chr3L_1505001	RAL-40
1402	chr3L	1506025	1506031	chr3L	1513592	1513648	17.6	5	7601	4.0	6.0	5.0	0.8	7623	chr3L	1506025	intron,intron	Psa +,cue -	chr3L	1509836	intron,intron	Psa +,cue -	chr3L	1513648	intron,intron	Psa +,cue -	chr3L_5_1505001	chr3L_1505001	RAL-40
1408	chr3L	1740848	1740880	chr3L	1741099	1741117	pogo	11	255	9.0	4.0	6.5	1.5	269	chr3L	1740848	intron	Gk +	chr3L	1740982	intron	Gk +	chr3L	1741117	intron	Gk +	chr3L_11_1740001	chr3L_1740001	RAL-40
1414	chr3L	2108230	2108283	chr3L	2113454	2113507	copia	27	5224	6.0	6.5	6.2	3.8	5277	chr3L	2108230	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113507	intron	sls -	chr3L_27_2110001	chr3L_2110001	RAL-40
1425	chr3L	2447483	2447536	chr3L	2456659	2456707	roo	23	9171	7.0	6.0	6.5	3.1	9224	chr3L	2447483	intron	CG45186 +	chr3L	2452095	intron	CG45186 +	chr3L	2456707	intron	CG45186 +	chr3L_23_2450001	chr3L_2450001	RAL-40
1443	chr3L	2751440	2751471	chr3L	2755755	2755761	F-element	9	4312	11.0	11.5	11.2	0.7	4321	chr3L	2751440	intron	Mrtf -	chr3L	2753600	intron	Mrtf -	chr3L	2755761	intron	Mrtf -	chr3L_9_2750001	chr3L_2750001	RAL-40
1450	chr3L	2927821	2927872	chr3L	2936118	2936169	Tirant	18	8292	6.0	8.0	7.0	2.2	8348	chr3L	2927821	intron	Shab +	chr3L	2931995	intron	Shab +	chr3L	2936169	intron	Shab +	chr3L_18_2930001	chr3L_2930001	RAL-40
1452	chr3L	2966701	2966723	chr3L	2974146	2974167	mdg1	10	7444	10.5	6.5	8.5	1.1	7466	chr3L	2966701	intergenic	not near genes	chr3L	2970434	intergenic	not near genes	chr3L	2974167	intergenic	not near genes	chr3L_10_2970001	chr3L_2970001	RAL-40
1454	chr3L	3040307	3040331	chr3L	3042116	3042140	S-element	11	1809	13.5	0.5	7.0	1.4	1833	chr3L	3040307	3` UTR	CG2162 +	chr3L	3041224	intergenic	not near genes	chr3L	3042140	intergenic	Jafrac2 +	chr3L_11_3040001	chr3L_3040001	RAL-40
1455	chr3L	3051724	3051749	chr3L	3051986	3052011	pogo	18	262	11.0	1.0	6.0	2.6	287	chr3L	3051724	3` UTR	CG32485 +	chr3L	3051868	intergenic	CG32485 +	chr3L	3052011	intergenic	CG32485 +	chr3L_18_3050001	chr3L_3050001	RAL-40
1456	chr3L	3061291	3061316	chr3L	3069868	3069898	Tirant	4	8578	3.5	6.0	4.8	0.7	8607	chr3L	3061291	intron	CG32486 -	chr3L	3065594	intron	CG32486 -	chr3L	3069898	intron	CG32486 -	chr3L_4_3065001	chr3L_3065001	RAL-40
1458	chr3L	3281422	3281468	chr3L	3281938	3281984	Doc	16	510	6.5	6.5	6.5	2.1	562	chr3L	3281422	intron	CG12017 +	chr3L	3281703	intron	CG12017 +	chr3L	3281984	intron	CG12017 +	chr3L_16_3280001	chr3L_3280001	RAL-40
1466	chr3L	3475057	3475106	chr3L	3475521	3475529	jockey	14	457	2.0	6.0	4.0	2.8	472	chr3L	3475057	intron	CG42324 +	chr3L	3475293	intron	CG42324 +	chr3L	3475529	intron	CG42324 +	chr3L_14_3475001	chr3L_3475001	RAL-40
1472	chr3L	3601289	3601331	chr3L	3606607	3606646	copia	21	5328	4.5	8.0	6.2	2.9	5357	chr3L	3601289	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606646	intron	Eip63E +	chr3L_21_3600001	chr3L_3600001	RAL-40
1481	chr3L	3833727	3833739	chr3L	3833988	3834000	pogo	6	261	8.5	6.5	7.5	0.7	273	chr3L	3833727	intron	enc +	chr3L	3833864	intron	enc +	chr3L	3834000	intron	enc +	chr3L_6_3830001	chr3L_3830001	RAL-40
1489	chr3L	4328727	4328763	chr3L	4336241	4336270	412	10	7517	3.5	10.0	6.8	1.3	7543	chr3L	4328727	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336270	exon	Cip4 -	chr3L_10_4330001	chr3L_4330001	RAL-40
1503	chr3L	4901112	4901135	chr3L	4907322	4907345	diver	10	6210	9.0	5.5	7.2	1.2	6233	chr3L	4901112	intergenic	CG13704 +	chr3L	4904228	intergenic	not near genes	chr3L	4907345	intergenic	not near genes	chr3L_10_4900001	chr3L_4900001	RAL-40
1505	chr3L	5034138	5034175	chr3L	5043310	5043347	roo	7	9170	5.5	0.0	2.8	1.8	9209	chr3L	5034138	intron	Con -	chr3L	5038742	intron	Con -	chr3L	5043347	intron	Con -	chr3L_7_5035001	chr3L_5035001	RAL-40
1506	chr3L	5045445	5045478	chr3L	5050241	5050279	Doc	15	4797	9.5	5.5	7.5	1.8	4834	chr3L	5045445	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050279	intron	Con -	chr3L_15_5045001	chr3L_5045001	RAL-40
1526	chr3L	5537704	5537751	chr3L	5538066	5538097	jockey	11	355	4.5	7.0	5.8	1.6	393	chr3L	5537704	intergenic	not near genes	chr3L	5537900	intergenic	not near genes	chr3L	5538097	intergenic	CG10625 -	chr3L_11_5535001	chr3L_5535001	RAL-40
1540	chr3L	5910011	5910062	chr3L	5910272	5910313	pogo	23	261	8.0	8.5	8.2	2.5	302	chr3L	5910011	intron	CG13288 +	chr3L	5910162	intron	CG13288 +	chr3L	5910313	intron	CG13288 +	chr3L_23_5910001	chr3L_5910001	RAL-40
1545	chr3L	6001664	6001713	chr3L	6004384	6004433	jockey	13	2720	8.0	3.0	5.5	2.0	2769	chr3L	6001664	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004433	intron	PVRAP +	chr3L_13_6000001	chr3L_6000001	RAL-40
1548	chr3L	6040346	6040394	chr3L	6042721	6042770	Doc	18	2375	7.0	6.5	6.8	2.3	2424	chr3L	6040346	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042770	intergenic	not near genes	chr3L_18_6040001	chr3L_6040001	RAL-40
1554	chr3L	6220897	6220948	chr3L	6230069	6230120	roo	26	9170	7.5	9.0	8.2	2.8	9223	chr3L	6220897	5` UTR	pncr008:3L +	chr3L	6225508	intergenic	not near genes	chr3L	6230120	intergenic	not near genes	chr3L_26_6225001	chr3L_6225001	RAL-40
1557	chr3L	6334990	6335037	chr3L	6335481	6335528	297	14	490	6.0	7.5	6.8	1.8	538	chr3L	6334990	intron	CG13300 -	chr3L	6335259	intron	CG13300 -	chr3L	6335528	intron	CG13300 -	chr3L_14_6335001	chr3L_6335001	RAL-40
1558	chr3L	6405641	6405686	chr3L	6432125	6432170	roo	21	26484	8.5	11.0	9.8	1.9	26529	chr3L	6405641	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432170	intron	CG42747 +	chr3L_21_6415001	chr3L_6415001	RAL-40
1561	chr3L	6620604	6620608	chr3L	6621054	6621058	Rt1c	5	450	11.0	13.0	12.0	0.4	454	chr3L	6620604	intergenic	not near genes	chr3L	6620831	intergenic	not near genes	chr3L	6621058	intergenic	not near genes	chr3L_5_6620001	chr3L_6620001	RAL-40
1564	chr3L	6855911	6855950	chr3L	6860715	6860724	Doc	11	4798	7.0	3.0	5.0	1.8	4813	chr3L	6855911	intergenic	not near genes	chr3L	6858318	intergenic	not near genes	chr3L	6860724	intergenic	not near genes	chr3L_11_6855001	chr3L_6855001	RAL-40
1566	chr3L	6887497	6887539	chr3L	6895009	6895051	roo	16	7510	8.5	8.0	8.2	1.7	7554	chr3L	6887497	intergenic	not near genes	chr3L	6891274	intergenic	not near genes	chr3L	6895051	intergenic	not near genes	chr3L_16_6890001	chr3L_6890001	RAL-40
1571	chr3L	6994872	6994916	chr3L	6995503	6995547	BS	13	631	0.0	8.0	4.0	2.6	675	chr3L	6994872	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995547	intergenic	not near genes	chr3L_13_6995001	chr3L_6995001	RAL-40
1586	chr3L	7377295	7377345	chr3L	7380420	7380470	297	28	3124	8.5	6.0	7.2	3.4	3175	chr3L	7377295	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380470	intron	SMSr -	chr3L_28_7375001	chr3L_7375001	RAL-40
1593	chr3L	7498744	7498789	chr3L	7503541	7503541	F-element	19	4794	7.0	14.0	10.5	1.7	4797	chr3L	7498744	5` UTR	CG8539 -	chr3L	7501142	intergenic	not near genes	chr3L	7503541	intergenic	not near genes	chr3L_19_7500001	chr3L_7500001	RAL-40
1600	chr3L	7793699	7793739	chr3L	7800771	7800811	297	27	7072	8.5	9.0	8.8	2.8	7112	chr3L	7793699	intron	CG32369 -	chr3L	7797255	intron	CG32369 -	chr3L	7800811	intron	CG32369 -	chr3L_27_7795001	chr3L_7795001	RAL-40
1604	chr3L	7886499	7886546	chr3L	7889032	7889084	Stalker4	22	2535	5.0	4.0	4.5	4.0	2585	chr3L	7886499	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889084	intron	CG32365 +	chr3L_22_7885001	chr3L_7885001	RAL-40
1605	chr3L	7916814	7916860	chr3L	7926005	7926051	roo	28	9190	9.0	9.5	9.2	2.7	9237	chr3L	7916814	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926051	3` UTR	syd -	chr3L_28_7920001	chr3L_7920001	RAL-40
1606	chr3L	7985352	7985358	chr3L	7987700	7987706	NOF	4	2348	18.0	5.5	11.8	0.3	2354	chr3L	7985352	intron	nmo +	chr3L	7986529	intron	nmo +	chr3L	7987706	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-40
1607	chr3L	7985365	7985369	chr3L	7987698	7987713	NOF	5	2344	17.0	4.5	10.8	0.4	2348	chr3L	7985365	intron	nmo +	chr3L	7986539	intron	nmo +	chr3L	7987713	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-40
1608	chr3L	7985370	7985391	chr3L	7987697	7987698	NOF	13	2339	7.0	4.5	5.8	1.9	2328	chr3L	7985370	intron	nmo +	chr3L	7986534	intron	nmo +	chr3L	7987698	intron	nmo +	chr3L_13_7985001	chr3L_7985001	RAL-40
1610	chr3L	8019680	8019734	chr3L	8024113	8024167	NOF	19	4422	7.5	6.0	6.8	2.4	4487	chr3L	8019680	intron	nmo +	chr3L	8021924	intron	nmo +	chr3L	8024167	intron	nmo +	chr3L_19_8020001	chr3L_8020001	RAL-40
1620	chr3L	8233569	8233585	chr3L	8238853	8238854	Rt1a	4	5280	3.5	13.0	8.2	0.4	5285	chr3L	8233569	intron	CG7213 -	chr3L	8236212	intron	CG7213 -	chr3L	8238854	intron,intron	CG7213 -,Dscam4 +	chr3L_4_8235001	chr3L_8235001	RAL-40
1627	chr3L	8481791	8481806	chr3L	8490930	8490972	roo	9	9166	3.5	4.5	4.0	1.8	9181	chr3L	8481791	intron	CG43163 -	chr3L	8486382	intron	CG43163 -	chr3L	8490972	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	RAL-40
1628	chr3L	8498299	8498325	chr3L	8505786	8505812	blood	4	7487	0.5	14.5	7.5	0.5	7513	chr3L	8498299	intron	CG43163 -	chr3L	8502056	intron	CG43163 -	chr3L	8505812	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-40
1630	chr3L	8791257	8791307	chr3L	8796697	8796746	I-element	11	5438	6.5	1.0	3.8	2.3	5489	chr3L	8791257	exon	Fhos +	chr3L	8794002	intron	Fhos +	chr3L	8796746	intron	Fhos +	chr3L_11_8790001	chr3L_8790001	RAL-40
1636	chr3L	9076908	9076944	chr3L	9084487	9084524	412	18	7576	11.5	7.5	9.5	1.7	7616	chr3L	9076908	exon	Tequila +	chr3L	9080716	intron	Tequila +	chr3L	9084524	exon	Tequila +	chr3L_18_9080001	chr3L_9080001	RAL-40
1638	chr3L	9130541	9130581	chr3L	9134317	9134356	412	9	3778	9.0	8.0	8.5	0.9	3815	chr3L	9130541	intergenic	bol -	chr3L	9132448	intergenic	not near genes	chr3L	9134356	intergenic	Dhpr +	chr3L_9_9130001	chr3L_9130001	RAL-40
1639	chr3L	9164679	9164718	chr3L	9166166	9166184	hobo	12	1483	7.5	0.0	3.8	2.5	1505	chr3L	9164679	intron	Rdl -	chr3L	9165432	intron	Rdl -	chr3L	9166184	intron	Rdl -	chr3L_12_9165001	chr3L_9165001	RAL-40
1641	chr3L	9219224	9219275	chr3L	9219916	9219946	jockey	15	678	4.0	7.5	5.8	2.2	722	chr3L	9219224	intergenic	not near genes	chr3L	9219585	intergenic	not near genes	chr3L	9219946	intergenic	not near genes	chr3L_15_9215001	chr3L_9215001	RAL-40
1642	chr3L	9270611	9270651	chr3L	9278382	9278400	roo	8	7764	6.0	7.5	6.8	1.0	7789	chr3L	9270611	intron	GluRIB +	chr3L	9274506	intron	GluRIB +	chr3L	9278400	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	RAL-40
1648	chr3L	9501684	9501730	chr3L	9502190	9502236	roo	23	506	8.0	9.5	8.8	2.3	552	chr3L	9501684	intron	path -	chr3L	9501960	intron	path -	chr3L	9502236	intron	path -	chr3L_23_9500001	chr3L_9500001	RAL-40
1650	chr3L	9526471	9526507	chr3L	9528171	9528207	Doc	20	1700	6.0	7.5	6.8	2.6	1736	chr3L	9526471	intergenic	not near genes	chr3L	9527339	intergenic	not near genes	chr3L	9528207	intergenic	not near genes	chr3L_20_9525001	chr3L_9525001	RAL-40
1652	chr3L	9571882	9571901	chr3L	9572250	9572269	jockey	13	367	18.5	1.5	10.0	1.2	387	chr3L	9571882	intron	CG42673 +	chr3L	9572076	intron	CG42673 +	chr3L	9572269	intron	CG42673 +	chr3L_13_9570001	chr3L_9570001	RAL-40
1653	chr3L	9575894	9575899	chr3L	9580992	9580997	jockey	4	5098	13.5	7.5	10.5	0.3	5103	chr3L	9575894	intron	CG42673 +	chr3L	9578446	intron	CG42673 +	chr3L	9580997	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-40
1654	chr3L	9575905	9575940	chr3L	9580987	9581036	jockey	11	5092	8.5	7.0	7.8	1.2	5131	chr3L	9575905	intron	CG42673 +	chr3L	9578470	intron	CG42673 +	chr3L	9581036	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	RAL-40
1665	chr3L	9929648	9929695	chr3L	9938447	9938494	roo	22	8797	8.5	12.5	10.5	1.9	8846	chr3L	9929648	intron	CG34356 +	chr3L	9934071	intron	CG34356 +	chr3L	9938494	intron	CG34356 +	chr3L_22_9930001	chr3L_9930001	RAL-40
1670	chr3L	10060093	10060115	chr3L	10067692	10067714	17.6	12	7599	11.0	7.0	9.0	1.2	7621	chr3L	10060093	intron	dpr6 +	chr3L	10063904	intron	dpr6 +	chr3L	10067714	intron	dpr6 +	chr3L_12_10060001	chr3L_10060001	RAL-40
1681	chr3L	10414937	10414974	chr3L	10417317	10417366	Doc	21	2390	0.0	8.0	4.0	4.2	2429	chr3L	10414937	intergenic	CG12362 +	chr3L	10416152	intergenic	not near genes	chr3L	10417366	intergenic	not near genes	chr3L_21_10415001	chr3L_10415001	RAL-40
1707	chr3L	11087053	11087087	chr3L	11088861	11088896	S-element	10	1806	6.5	7.5	7.0	1.2	1843	chr3L	11087053	intron	JIL-1 -	chr3L	11087974	intron	JIL-1 -	chr3L	11088896	intron	JIL-1 -	chr3L_10_11085001	chr3L_11085001	RAL-40
1708	chr3L	11105285	11105324	chr3L	11107004	11107055	X-element	13	1728	5.5	2.0	3.8	2.7	1770	chr3L	11105285	intergenic	not near genes	chr3L	11106170	intergenic	not near genes	chr3L	11107055	exon	CG32073 -	chr3L_13_11105001	chr3L_11105001	RAL-40
1713	chr3L	11264448	11264492	chr3L	11271420	11271464	17.6	15	6971	4.5	7.5	6.0	2.1	7016	chr3L	11264448	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271464	intergenic	not near genes	chr3L_15_11265001	chr3L_11265001	RAL-40
1715	chr3L	11329694	11329723	chr3L	11332894	11332931	jockey	11	3206	5.0	4.0	4.5	2.0	3237	chr3L	11329694	intergenic	not near genes	chr3L	11331312	intergenic	not near genes	chr3L	11332931	intergenic	not near genes	chr3L_11_11330001	chr3L_11330001	RAL-40
1723	chr3L	11723069	11723114	chr3L	11727884	11727929	Doc	33	4814	10.5	10.5	10.5	2.9	4860	chr3L	11723069	3` UTR	Bmcp +	chr3L	11725499	intron	Bmcp +	chr3L	11727929	3` UTR	Bmcp +	chr3L_33_11725001	chr3L_11725001	RAL-40
1731	chr3L	11864533	11864585	chr3L	11865847	11865900	pogo	27	1310	3.5	10.0	6.8	3.5	1367	chr3L	11864533	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865900	intron	CG44837 -	chr3L_27_11865001	chr3L_11865001	RAL-40
1766	chr3L	12874914	12874959	chr3L	12877226	12877271	jockey	24	2311	3.5	6.5	5.0	4.0	2357	chr3L	12874914	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877271	intergenic	not near genes	chr3L_24_12875001	chr3L_12875001	RAL-40
1769	chr3L	12919263	12919294	chr3L	12924750	12924777	Rt1c	6	5485	8.0	8.5	8.2	0.7	5514	chr3L	12919263	intergenic	not near genes	chr3L	12922020	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-40
1771	chr3L	12957785	12957813	chr3L	12962282	12962315	copia	14	4501	6.5	10.0	8.2	1.5	4530	chr3L	12957785	intergenic	not near genes	chr3L	12960050	intergenic	not near genes	chr3L	12962315	intergenic	not near genes	chr3L_14_12960001	chr3L_12960001	RAL-40
1788	chr3L	13525144	13525158	chr3L	13532959	13532959	roo	4	7812	14.0	9.5	11.8	0.3	7815	chr3L	13525144	intergenic	not near genes	chr3L	13529052	intergenic	not near genes	chr3L	13532959	intergenic	not near genes	chr3L_4_13525001	chr3L_13525001	RAL-40
1789	chr3L	13525159	13525190	chr3L	13532955	13532970	roo	9	7802	7.5	8.0	7.8	1.0	7811	chr3L	13525159	intergenic	not near genes	chr3L	13529064	intergenic	not near genes	chr3L	13532970	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	RAL-40
1801	chr3L	13804529	13804569	chr3L	13822834	13822870	roo	25	18303	6.0	7.5	6.8	3.2	18341	chr3L	13804529	intergenic	not near genes	chr3L	13813700	intergenic	not near genes	chr3L	13822870	intergenic	not near genes	chr3L_25_13810001	chr3L_13810001	RAL-40
1813	chr3L	14245556	14245593	chr3L	14245664	14245707	1360	13	109	6.5	5.5	6.0	1.9	151	chr3L	14245556	3` UTR	CR44561 -	chr3L	14245632	3` UTR	CR44561 -	chr3L	14245707	intergenic	CR44561 -,CR44560 +	chr3L_13_14245001	chr3L_14245001	RAL-40
1815	chr3L	14267352	14267396	chr3L	14271812	14271856	F-element	18	4459	10.0	10.0	10.0	1.6	4504	chr3L	14267352	intergenic	not near genes	chr3L	14269604	intergenic	not near genes	chr3L	14271856	intergenic	not near genes	chr3L_18_14265001	chr3L_14265001	RAL-40
1818	chr3L	14295967	14296013	chr3L	14296473	14296519	roo	14	502	1.0	7.5	4.2	2.7	552	chr3L	14295967	intron	fz +	chr3L	14296243	intron	fz +	chr3L	14296519	intron	fz +	chr3L_14_14295001	chr3L_14295001	RAL-40
1819	chr3L	14312027	14312055	chr3L	14316836	14316866	X-element	7	4820	3.5	3.5	3.5	1.6	4839	chr3L	14312027	exon	fz +	chr3L	14314446	intron	fz +	chr3L	14316866	intron	fz +	chr3L_7_14310001	chr3L_14310001	RAL-40
1826	chr3L	14468428	14468465	chr3L	14473657	14473694	copia	24	5229	5.5	6.0	5.8	3.5	5266	chr3L	14468428	intron	bbg -	chr3L	14471061	intron	bbg -	chr3L	14473694	intron	bbg -	chr3L_24_14470001	chr3L_14470001	RAL-40
1832	chr3L	14524297	14524356	chr3L	14529079	14529135	F-element	23	4780	6.5	2.0	4.2	4.4	4838	chr3L	14524297	intron	bbg -	chr3L	14526716	intron	bbg -	chr3L	14529135	intron	bbg -	chr3L_23_14525001	chr3L_14525001	RAL-40
1838	chr3L	14721190	14721209	chr3L	14723033	14723062	Rt1c	6	1852	3.0	6.0	4.5	1.1	1872	chr3L	14721190	intron	ome +	chr3L	14722126	intron	ome +	chr3L	14723062	intron	ome +	chr3L_6_14720001	chr3L_14720001	RAL-40
1839	chr3L	14725583	14725619	chr3L	14728597	14728633	Doc	6	3010	0.0	13.5	6.8	0.8	3050	chr3L	14725583	intron	ome +	chr3L	14727108	intron	ome +	chr3L	14728633	intron	ome +	chr3L_6_14725001	chr3L_14725001	RAL-40
1843	chr3L	14825142	14825156	chr3L	14832889	14832903	Stalker2	14	7747	1.0	5.0	3.0	3.5	7761	chr3L	14825142	intron	CG17839 +	chr3L	14829022	intron	CG17839 +	chr3L	14832903	intron	CG17839 +	chr3L_14_14825001	chr3L_14825001	RAL-40
1850	chr3L	14954358	14954399	chr3L	14956035	14956088	transib2	10	1686	5.0	10.0	7.5	1.2	1730	chr3L	14954358	intergenic	not near genes	chr3L	14955223	intergenic	not near genes	chr3L	14956088	intergenic	not near genes	chr3L_10_14955001	chr3L_14955001	RAL-40
1851	chr3L	14970747	14970764	chr3L	14971078	14971095	F-element	6	331	9.5	6.0	7.8	0.7	348	chr3L	14970747	intergenic	Tom +	chr3L	14970921	intergenic	not near genes	chr3L	14971095	intergenic	not near genes	chr3L_6_14970001	chr3L_14970001	RAL-40
1855	chr3L	15085030	15085082	chr3L	15086216	15086268	1360	25	1184	7.5	10.0	8.8	2.6	1238	chr3L	15085030	intron	cp309 -	chr3L	15085649	intron	cp309 -	chr3L	15086268	intron	cp309 -	chr3L_25_15085001	chr3L_15085001	RAL-40
1864	chr3L	15295750	15295800	chr3L	15298613	15298644	gypsy5	18	2859	6.0	11.0	8.5	1.9	2894	chr3L	15295750	intergenic	not near genes	chr3L	15297197	intergenic	not near genes	chr3L	15298644	intergenic	Best4 +	chr3L_18_15295001	chr3L_15295001	RAL-40
1867	chr3L	15423743	15423784	chr3L	15426607	15426638	opus	20	2863	10.0	7.0	8.5	2.1	2895	chr3L	15423743	intergenic	not near genes	chr3L	15425190	intergenic	not near genes	chr3L	15426638	intergenic	not near genes	chr3L_20_15425001	chr3L_15425001	RAL-40
1879	chr3L	15899218	15899249	chr3L	15899790	15899803	jockey	8	566	3.5	6.0	4.8	1.4	585	chr3L	15899218	intergenic	pHCl -	chr3L	15899510	intergenic	pHCl -	chr3L	15899803	intergenic	sff -	chr3L_8_15895001	chr3L_15895001	RAL-40
1882	chr3L	15929217	15929230	chr3L	15938384	15938397	roo	9	9167	2.0	13.5	7.8	1.0	9180	chr3L	15929217	intron	Pka-C3 -	chr3L	15933807	intron	Pka-C3 -	chr3L	15938397	intron	Pka-C3 -	chr3L_9_15930001	chr3L_15930001	RAL-40
1888	chr3L	16184088	16184138	chr3L	16188927	16188952	X-element	26	4835	8.0	5.5	6.8	3.3	4864	chr3L	16184088	intergenic	not near genes	chr3L	16186520	intergenic	not near genes	chr3L	16188952	intergenic	not near genes	chr3L_26_16185001	chr3L_16185001	RAL-40
1894	chr3L	16443828	16443872	chr3L	16446188	16446232	Doc	14	2360	3.5	5.0	4.2	2.7	2404	chr3L	16443828	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446232	intron,intron	CG33158 +,dsx-c73A -	chr3L_14_16445001	chr3L_16445001	RAL-40
1896	chr3L	16493959	16494010	chr3L	16494493	16494517	jockey	26	531	7.5	9.5	8.5	2.7	558	chr3L	16493959	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494238	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494517	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_26_16490001	chr3L_16490001	RAL-40
1903	chr3L	16616499	16616507	chr3L	16621841	16621845	297	5	5345	15.5	4.5	10.0	0.5	5346	chr3L	16616499	3` UTR	Abl -	chr3L	16619172	3` UTR	Abl -	chr3L	16621845	3` UTR	Abl -	chr3L_5_16615001	chr3L_16615001	RAL-40
1904	chr3L	16616508	16616542	chr3L	16621838	16621890	297	11	5339	6.5	4.0	5.2	1.8	5382	chr3L	16616508	3` UTR	Abl -	chr3L	16619199	3` UTR	Abl -	chr3L	16621890	3` UTR	Abl -	chr3L_11_16615001	chr3L_16615001	RAL-40
1906	chr3L	16684010	16684043	chr3L	16689261	16689294	copia	13	5251	8.5	10.0	9.2	1.3	5284	chr3L	16684010	intron,intron	Lasp -,CG43954 -	chr3L	16686652	intron,intron	Lasp -,CG43954 -	chr3L	16689294	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_13_16685001	chr3L_16685001	RAL-40
1921	chr3L	16945710	16945738	chr3L	16954883	16954901	roo	14	9165	9.0	5.5	7.2	1.7	9191	chr3L	16945710	exon	Obp73a +	chr3L	16950306	intergenic	not near genes	chr3L	16954901	5` UTR	Nc73EF +	chr3L_14_16950001	chr3L_16950001	RAL-40
1922	chr3L	16945739	16945759	chr3L	16954882	16954892	roo	9	9150	5.5	5.0	5.2	1.5	9153	chr3L	16945739	exon	Obp73a +	chr3L	16950316	intergenic	not near genes	chr3L	16954892	5` UTR	Nc73EF +	chr3L_9_16950001	chr3L_16950001	RAL-40
1925	chr3L	17034913	17034973	chr3L	17035121	17035141	G2	22	205	0.5	6.0	3.2	5.2	228	chr3L	17034913	intergenic	not near genes	chr3L	17035027	intergenic	not near genes	chr3L	17035141	intergenic	not near genes	chr3L_22_17035001	chr3L_17035001	RAL-40
1926	chr3L	17084985	17085034	chr3L	17094154	17094203	roo	18	9169	5.0	8.5	6.8	2.3	9218	chr3L	17084985	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094203	intron	Rbp6 -	chr3L_18_17085001	chr3L_17085001	RAL-40
1938	chr3L	17516965	17516981	chr3L	17524538	17524558	412	5	7575	16.5	7.0	11.8	0.4	7593	chr3L	17516965	intron	CG7564 +	chr3L	17520762	intron	CG7564 +	chr3L	17524558	3` UTR	CG7564 +	chr3L_5_17520001	chr3L_17520001	RAL-40
1939	chr3L	17516983	17517012	chr3L	17524537	17524569	412	6	7564	7.5	6.5	7.0	0.8	7586	chr3L	17516983	intron	CG7564 +	chr3L	17520776	intron	CG7564 +	chr3L	17524569	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-40
1948	chr3L	17799802	17799842	chr3L	17801609	17801649	S-element	22	1806	8.0	10.0	9.0	2.2	1847	chr3L	17799802	intron	NUCB1 -	chr3L	17800726	intron	NUCB1 -	chr3L	17801649	intron	NUCB1 -	chr3L_22_17800001	chr3L_17800001	RAL-40
1951	chr3L	17918360	17918378	chr3L	17921183	17921201	opus	6	2823	7.5	9.5	8.5	0.6	2841	chr3L	17918360	intergenic	not near genes	chr3L	17919780	intergenic	not near genes	chr3L	17921201	intergenic	not near genes	chr3L_6_17915001	chr3L_17915001	RAL-40
1952	chr3L	17918380	17918403	chr3L	17921176	17921226	opus	6	2818	3.5	7.0	5.2	1.0	2846	chr3L	17918380	intergenic	not near genes	chr3L	17919803	intergenic	not near genes	chr3L	17921226	intergenic	not near genes	chr3L_6_17915001	chr3L_17915001	RAL-40
1956	chr3L	18047685	18047738	chr3L	18056762	18056815	roo	14	9077	4.5	7.0	5.8	2.1	9130	chr3L	18047685	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056815	intron	Eip75B -	chr3L_14_18050001	chr3L_18050001	RAL-40
1972	chr3L	18189573	18189585	chr3L	18190220	18190226	S-element	6	645	12.5	7.5	10.0	0.5	653	chr3L	18189573	intergenic	not near genes	chr3L	18189900	intergenic	not near genes	chr3L	18190226	intergenic	not near genes	chr3L_6_18185001	chr3L_18185001	RAL-40
1989	chr3L	18506121	18506161	chr3L	18509602	18509644	F-element	22	3483	5.5	8.0	6.8	2.8	3523	chr3L	18506121	intergenic	not near genes	chr3L	18507882	intergenic	not near genes	chr3L	18509644	intergenic	not near genes	chr3L_22_18505001	chr3L_18505001	RAL-40
1990	chr3L	18528609	18528655	chr3L	18537790	18537836	roo	17	9181	8.5	9.5	9.0	1.7	9227	chr3L	18528609	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537836	intergenic	not near genes	chr3L_17_18530001	chr3L_18530001	RAL-40
1994	chr3L	18593933	18593958	chr3L	18595928	18595958	Doc	14	1999	10.0	2.0	6.0	2.0	2025	chr3L	18593933	intergenic	term -	chr3L	18594946	intergenic	not near genes	chr3L	18595958	intergenic	CR45389 +	chr3L_14_18590001	chr3L_18590001	RAL-40
2001	chr3L	18710742	18710788	chr3L	18718714	18718760	Stalker2	24	7971	5.5	5.5	5.5	3.7	8018	chr3L	18710742	intergenic	not near genes	chr3L	18714751	intergenic	not near genes	chr3L	18718760	intergenic	not near genes	chr3L_24_18710001	chr3L_18710001	RAL-40
2002	chr3L	18772391	18772435	chr3L	18781092	18781136	roo	24	8701	8.5	7.5	8.0	2.7	8745	chr3L	18772391	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781136	intron	ftz-f1 -	chr3L_24_18775001	chr3L_18775001	RAL-40
2013	chr3L	19008831	19008870	chr3L	19009187	19009223	jockey	6	355	0.0	8.5	4.2	1.2	392	chr3L	19008831	intron	nkd -	chr3L	19009027	intron	nkd -	chr3L	19009223	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-40
2018	chr3L	19115625	19115671	chr3L	19115823	19115859	BS	11	192	4.5	7.0	5.8	1.6	234	chr3L	19115625	intron	CG14082 -	chr3L	19115742	intron	CG14082 -	chr3L	19115859	intron	CG14082 -	chr3L_11_19115001	chr3L_19115001	RAL-40
2019	chr3L	19117025	19117068	chr3L	19124492	19124535	mdg1	17	7461	10.0	8.0	9.0	1.7	7510	chr3L	19117025	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124535	intron	CG14082 -	chr3L_17_19120001	chr3L_19120001	RAL-40
2020	chr3L	19117071	19117075	chr3L	19124488	19124541	mdg1	4	7444	7.5	7.5	7.5	0.5	7470	chr3L	19117071	intron	CG14082 -	chr3L	19120806	intron	CG14082 -	chr3L	19124541	intron	CG14082 -	chr3L_4_19120001	chr3L_19120001	RAL-40
2021	chr3L	19208040	19208088	chr3L	19209434	19209462	Doc	11	1390	4.5	6.0	5.2	1.8	1422	chr3L	19208040	intron	fz2 -	chr3L	19208751	intron	fz2 -	chr3L	19209462	intron	fz2 -	chr3L_11_19205001	chr3L_19205001	RAL-40
2035	chr3L	19820283	19820299	chr3L	19827852	19827868	412	6	7569	10.5	6.0	8.2	0.7	7585	chr3L	19820283	intron	Deaf1 +	chr3L	19824076	intron	Deaf1 +	chr3L	19827868	intron	Deaf1 +	chr3L_6_19820001	chr3L_19820001	RAL-40
2036	chr3L	19848493	19848528	chr3L	19857693	19857738	roo	14	9206	9.0	9.5	9.2	1.4	9245	chr3L	19848493	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857738	intron	Papss +	chr3L_14_19850001	chr3L_19850001	RAL-40
2037	chr3L	19861805	19861844	chr3L	19863613	19863652	S-element	20	1804	4.0	6.0	5.0	3.3	1847	chr3L	19861805	5` UTR	CR45433 +	chr3L	19862728	intergenic	not near genes	chr3L	19863652	intergenic	not near genes	chr3L_20_19860001	chr3L_19860001	RAL-40
2042	chr3L	20113639	20113690	chr3L	20122916	20122919	roo	30	9272	6.5	5.5	6.0	4.3	9280	chr3L	20113639	intergenic	not near genes	chr3L	20118279	intergenic	not near genes	chr3L	20122919	intergenic	not near genes	chr3L_30_20115001	chr3L_20115001	RAL-40
2048	chr3L	20257318	20257361	chr3L	20258458	20258476	pogo	18	1137	6.0	11.0	8.5	1.9	1158	chr3L	20257318	intron	rdgC +	chr3L	20257897	intron	rdgC +	chr3L	20258476	intron	rdgC +	chr3L_18_20255001	chr3L_20255001	RAL-40
2049	chr3L	20476736	20476783	chr3L	20484355	20484402	springer	23	7618	9.0	6.5	7.8	2.6	7666	chr3L	20476736	3` UTR	isoQC +	chr3L	20480569	intergenic	not near genes	chr3L	20484402	3` UTR	ZnT77C -	chr3L_23_20480001	chr3L_20480001	RAL-40
2053	chr3L	20590044	20590085	chr3L	20590603	20590622	412	5	551	10.0	7.5	8.8	0.5	578	chr3L	20590044	intergenic	not near genes	chr3L	20590333	intergenic	not near genes	chr3L	20590622	intergenic	not near genes	chr3L_5_20590001	chr3L_20590001	RAL-40
2061	chr3L	21014907	21014948	chr3L	21023398	21023413	Tirant	12	8483	6.5	5.5	6.0	1.7	8506	chr3L	21014907	intron	skd -	chr3L	21019160	intron	skd -	chr3L	21023413	intron	skd -	chr3L_12_21015001	chr3L_21015001	RAL-40
2064	chr3L	21151856	21151897	chr3L	21156950	21157001	flea	27	5103	6.0	8.0	7.0	3.4	5145	chr3L	21151856	intron	Ac78C -	chr3L	21154428	intron	Ac78C -	chr3L	21157001	intron	Ac78C -	chr3L_27_21150001	chr3L_21150001	RAL-40
2070	chr3L	21306126	21306177	chr3L	21315304	21315356	roo	22	9179	7.5	2.0	4.8	3.8	9230	chr3L	21306126	3` UTR	CG7632 +	chr3L	21310741	intron	Pc -	chr3L	21315356	3` UTR	Pc -	chr3L_22_21310001	chr3L_21310001	RAL-40
2071	chr3L	21361708	21361750	chr3L	21362682	21362724	G2	23	973	6.5	7.5	7.0	2.9	1016	chr3L	21361708	intergenic	CG32440 +	chr3L	21362216	intergenic	not near genes	chr3L	21362724	intergenic	not near genes	chr3L_23_21360001	chr3L_21360001	RAL-40
2072	chr3L	21372625	21372676	chr3L	21379315	21379366	McClintock	20	6689	3.0	4.0	3.5	4.4	6741	chr3L	21372625	intergenic	not near genes	chr3L	21375996	intergenic	not near genes	chr3L	21379366	intergenic	not near genes	chr3L_20_21375001	chr3L_21375001	RAL-40
2073	chr3L	21498832	21498864	chr3L	21500468	21500519	1360	9	1649	8.5	4.5	6.5	1.2	1687	chr3L	21498832	intron	Glg1 -	chr3L	21499676	intron	Glg1 -	chr3L	21500519	intron	Glg1 -	chr3L_9_21495001	chr3L_21495001	RAL-40
2074	chr3L	21501155	21501171	chr3L	21501269	21501285	1360	6	114	9.0	17.5	13.2	0.4	130	chr3L	21501155	intron	Glg1 -	chr3L	21501220	intron	Glg1 -	chr3L	21501285	intron	Glg1 -	chr3L_6_21500001	chr3L_21500001	RAL-40
2079	chr3L	21749309	21749318	chr3L	21754487	21754490	Doc	4	5178	9.5	6.5	8.0	0.4	5181	chr3L	21749309	intron	Syn1 -	chr3L	21751900	intron	Syn1 -	chr3L	21754490	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-40
2089	chr3L	22099656	22099700	chr3L	22105862	22105906	3S18	20	6204	5.5	6.0	5.8	2.9	6250	chr3L	22099656	intergenic	not near genes	chr3L	22102781	intergenic	not near genes	chr3L	22105906	intergenic	not near genes	chr3L_20_22100001	chr3L_22100001	RAL-40
2096	chr3L	22555748	22555803	chr3L	22563238	22563282	blood	14	7485	4.0	1.0	2.5	4.0	7534	chr3L	22555748	intergenic	not near genes	chr3L	22559515	intergenic	not near genes	chr3L	22563282	intergenic	not near genes	chr3L_14_22555001	chr3L_22555001	RAL-40
2099	chr3L	22577605	22577648	chr3L	22582413	22582445	Doc	15	4802	4.0	5.5	4.8	2.6	4840	chr3L	22577605	intergenic	not near genes	chr3L	22580025	intergenic	not near genes	chr3L	22582445	3` UTR	CG14459 -	chr3L_15_22580001	chr3L_22580001	RAL-40
2100	chr3L	22617172	22617221	chr3L	22624644	22624693	blood	24	7471	6.0	7.5	6.8	3.1	7521	chr3L	22617172	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624693	intron	CG14459 -	chr3L_24_22620001	chr3L_22620001	RAL-40
2108	chr3L	22761372	22761420	chr3L	22766826	22766846	Ivk	29	5453	9.0	7.0	8.0	3.2	5474	chr3L	22761372	intron	SPoCk +	chr3L	22764109	intron	SPoCk +	chr3L	22766846	intron	SPoCk +	chr3L_29_22760001	chr3L_22760001	RAL-40
2110	chr3L	22865967	22866009	chr3L	22867120	22867162	Doc	20	1151	8.0	8.5	8.2	2.2	1195	chr3L	22865967	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867162	intron	CG33170 +	chr3L_20_22865001	chr3L_22865001	RAL-40
2114	chr3L	22989842	22989866	chr3L	22996836	22996860	297	8	6994	15.5	5.0	10.2	0.7	7018	chr3L	22989842	intergenic	not near genes	chr3L	22993351	intergenic	not near genes	chr3L	22996860	intergenic	not near genes	chr3L_8_22990001	chr3L_22990001	RAL-40
2115	chr3L	22989868	22989894	chr3L	22996834	22996888	297	14	6983	8.5	5.0	6.8	1.8	7020	chr3L	22989868	intergenic	not near genes	chr3L	22993378	intergenic	not near genes	chr3L	22996888	intergenic	not near genes	chr3L_14_22990001	chr3L_22990001	RAL-40
2125	chr3L	23665514	23665525	chr3L	23665624	23665635	gypsy8	7	109	12.5	28.0	20.2	0.3	121	chr3L	23665514	intron	AGO3 +	chr3L	23665574	intron	AGO3 +	chr3L	23665635	intron	AGO3 +	chr3L_7_23665001	chr3L_23665001	RAL-40
2126	chr3L	23848831	23848836	chr3L	23849675	23849680	R1A1-element	4	844	8.5	6.5	7.5	0.5	849	chr3L	23848831	intron	CG40470 -	chr3L	23849256	intron	CG40470 -	chr3L	23849680	intron	CG40470 -	chr3L_4_23845001	chr3L_23845001	RAL-40
2127	chr3L	23973968	23974002	chr3L	23974463	23974486	Dm88	9	494	5.0	6.5	5.8	1.3	518	chr3L	23973968	intron	CG40470 -	chr3L	23974227	intron	CG40470 -	chr3L	23974486	intron	CG40470 -	chr3L_9_23970001	chr3L_23970001	RAL-40
2129	chr3L	24012391	24012435	chr3L	24020751	24020796	roo	23	8360	8.0	6.5	7.2	2.8	8405	chr3L	24012391	intergenic	not near genes	chr3L	24016594	intergenic	not near genes	chr3L	24020796	intergenic	not near genes	chr3L_23_24015001	chr3L_24015001	RAL-40
2130	chr3L	24021257	24021312	chr3L	24022434	24022479	1360	15	1168	9.0	8.0	8.5	1.6	1222	chr3L	24021257	intergenic	not near genes	chr3L	24021868	intergenic	not near genes	chr3L	24022479	intergenic	not near genes	chr3L_15_24020001	chr3L_24020001	RAL-40
2132	chr3L	24168786	24168821	chr3L	24176114	24176133	ZAM	5	7317	1.0	6.0	3.5	1.1	7347	chr3L	24168786	intron	Snap25 +	chr3L	24172460	intron	Snap25 +	chr3L	24176133	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-40
2139	chr3L	24791876	24791918	chr3L	24796675	24796678	Doc	12	4796	5.0	4.5	4.8	2.1	4802	chr3L	24791876	intergenic	not near genes	chr3L	24794277	intergenic	not near genes	chr3L	24796678	intergenic	not near genes	chr3L_12_24790001	chr3L_24790001	RAL-40
2145	chr3L	25628486	25628500	chr3L	25633272	25633291	F-element	9	4789	15.0	9.0	12.0	0.7	4805	chr3L	25628486	intron	CG41343 -	chr3L	25630888	intron	CG41343 -	chr3L	25633291	intron	CG41343 -	chr3L_9_25630001	chr3L_25630001	RAL-40
2146	chr3L	25628501	25628526	chr3L	25633265	25633317	F-element	17	4787	7.5	8.5	8.0	1.9	4816	chr3L	25628501	intron	CG41343 -	chr3L	25630909	intron	CG41343 -	chr3L	25633317	intron	CG41343 -	chr3L_17_25630001	chr3L_25630001	RAL-40
2154	chr3L	27980680	27980700	chr3L	27985498	27985518	Doc	12	4818	8.5	4.5	6.5	1.6	4838	chr3L	27980680	intron	CG17514 -	chr3L	27983099	intron	CG17514 -	chr3L	27985518	intron	CG17514 -	chr3L_12_27980001	chr3L_27980001	RAL-40
2161	chr3R	1867171	1867174	chr3R	1954887	1954914	Doc3-element	7	87730	23.0	9.5	16.2	0.4	87743	chr3R	1867171	intron	CG42623 +	chr3R	1911042	intron	CG42623 +	chr3R	1954914	intergenic	not near genes	chr3R_7_1910001	chr3R_1910001	RAL-40
2164	chr3R	1953170	1953188	chr3R	1958544	1958553	Cr1a	5	5368	26.0	30.5	28.2	0.2	5383	chr3R	1953170	intergenic	not near genes	chr3R	1955862	intergenic	not near genes	chr3R	1958553	intergenic	not near genes	chr3R_5_1955001	chr3R_1955001	RAL-40
2169	chr3R	3989284	3989301	chr3R	4068942	4068950	mdg1	6	79653	18.0	23.5	20.8	0.3	79666	chr3R	3989284	intergenic	not near genes	chr3R	4029117	intergenic	not near genes	chr3R	4068950	intergenic	not near genes	chr3R_6_4025001	chr3R_4025001	RAL-40
2170	chr3R	4105021	4105063	chr3R	4110245	4110287	copia	10	5224	3.0	1.5	2.2	3.1	5266	chr3R	4105021	intergenic	not near genes	chr3R	4107654	intergenic	not near genes	chr3R	4110287	intergenic	not near genes	chr3R_10_4105001	chr3R_4105001	RAL-40
2172	chr3R	4206049	4206103	chr3R	4211644	4211698	mdg3	23	5593	7.5	3.5	5.5	3.5	5649	chr3R	4206049	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211698	intron	CG14636 -	chr3R_23_4205001	chr3R_4205001	RAL-40
2173	chr3R	4366746	4366785	chr3R	4375138	4375138	roo	20	8397	7.0	3.0	5.0	3.3	8392	chr3R	4366746	3` UTR	CG1090 +	chr3R	4370942	intergenic	not near genes	chr3R	4375138	5` UTR	CR44922 +	chr3R_20_4370001	chr3R_4370001	RAL-40
2174	chr3R	4408394	4408411	chr3R	4412718	4412735	Juan	12	4323	14.0	11.0	12.5	0.9	4341	chr3R	4408394	intron	CG32944 -	chr3R	4410564	intron	CG32944 -	chr3R	4412735	intron	CG32944 -	chr3R_12_4410001	chr3R_4410001	RAL-40
2175	chr3R	4408414	4408441	chr3R	4412715	4412754	Juan	18	4318	8.5	9.5	9.0	1.8	4340	chr3R	4408414	intron	CG32944 -	chr3R	4410584	intron	CG32944 -	chr3R	4412754	intron	CG32944 -	chr3R_18_4410001	chr3R_4410001	RAL-40
2178	chr3R	4609531	4609579	chr3R	4610715	4610763	1360	22	1184	8.5	12.5	10.5	1.9	1232	chr3R	4609531	intergenic	not near genes	chr3R	4610147	intergenic	not near genes	chr3R	4610763	intergenic	not near genes	chr3R_22_4610001	chr3R_4610001	RAL-40
2180	chr3R	4683159	4683207	chr3R	4684938	4684969	S-element	18	1774	8.0	4.0	6.0	2.6	1810	chr3R	4683159	intron	CG43427 +	chr3R	4684064	intron	CG43427 +	chr3R	4684969	intron	CG43427 +	chr3R_18_4680001	chr3R_4680001	RAL-40
2181	chr3R	4753226	4753268	chr3R	4757549	4757566	F-element	13	4320	7.5	6.0	6.8	1.7	4340	chr3R	4753226	intron,intron	atms +,CG44098 -	chr3R	4755396	intron,intron	atms +,CG44098 -	chr3R	4757566	intron,exon	atms +,CG44098 -	chr3R_13_4755001	chr3R_4755001	RAL-40
2182	chr3R	4759701	4759746	chr3R	4761218	4761263	hopper2	13	1516	4.5	6.5	5.5	2.0	1562	chr3R	4759701	intron,intron	atms +,CG44098 -	chr3R	4760482	intron,intron	atms +,CG44098 -	chr3R	4761263	intron,intron	atms +,CG44098 -	chr3R_13_4760001	chr3R_4760001	RAL-40
2186	chr3R	4887465	4887511	chr3R	4894857	4894907	rover	7	7378	7.0	4.0	5.5	1.1	7442	chr3R	4887465	intergenic	not near genes	chr3R	4891186	intergenic	not near genes	chr3R	4894907	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	RAL-40
2192	chr3R	5045823	5045877	chr3R	5052945	5052991	HMS-Beagle	24	7120	8.5	5.5	7.0	3.0	7168	chr3R	5045823	3` UTR	CR43635 -	chr3R	5049407	intergenic	not near genes	chr3R	5052991	intergenic	CR45588 -	chr3R_24_5045001	chr3R_5045001	RAL-40
2193	chr3R	5067965	5067974	chr3R	5073502	5073511	mdg3	6	5537	22.0	9.0	15.5	0.4	5546	chr3R	5067965	intergenic	not near genes	chr3R	5070738	intergenic	not near genes	chr3R	5073511	intergenic	not near genes	chr3R_6_5070001	chr3R_5070001	RAL-40
2194	chr3R	5067975	5068014	chr3R	5073496	5073551	mdg3	21	5534	8.5	7.0	7.8	2.4	5576	chr3R	5067975	intergenic	not near genes	chr3R	5070763	intergenic	not near genes	chr3R	5073551	intergenic	not near genes	chr3R_21_5070001	chr3R_5070001	RAL-40
2200	chr3R	5338383	5338423	chr3R	5343580	5343620	Rt1c	23	5194	10.5	11.0	10.8	1.9	5237	chr3R	5338383	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343620	intron	mtd -	chr3R_23_5340001	chr3R_5340001	RAL-40
2201	chr3R	5445941	5445991	chr3R	5452421	5452471	Burdock	25	6479	11.0	7.5	9.2	2.5	6530	chr3R	5445941	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452471	intron	CG14669 +	chr3R_25_5445001	chr3R_5445001	RAL-40
2207	chr3R	5745994	5746044	chr3R	5746255	5746305	pogo	23	259	3.0	7.5	5.2	3.7	311	chr3R	5745994	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746305	3` UTR	Madm +	chr3R_23_5745001	chr3R_5745001	RAL-40
2208	chr3R	5747002	5747043	chr3R	5753202	5753254	diver	24	6209	8.5	6.5	7.5	2.8	6252	chr3R	5747002	intergenic	Madm +	chr3R	5750128	intergenic	not near genes	chr3R	5753254	intergenic	CG2091 -	chr3R_24_5750001	chr3R_5750001	RAL-40
2209	chr3R	5809101	5809144	chr3R	5809358	5809405	pogo	12	256	4.0	8.5	6.2	1.7	304	chr3R	5809101	3` UTR	CG11000 +	chr3R	5809253	3` UTR	CG11000 +	chr3R	5809405	3` UTR	CG11000 +	chr3R_12_5805001	chr3R_5805001	RAL-40
2210	chr3R	5822366	5822410	chr3R	5823553	5823597	1360	16	1186	6.5	10.5	8.5	1.7	1231	chr3R	5822366	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823597	3` UTR	CG2023 -	chr3R_16_5820001	chr3R_5820001	RAL-40
2213	chr3R	5927542	5927547	chr3R	5927802	5927807	pogo	4	260	12.0	7.5	9.8	0.4	265	chr3R	5927542	intron	CG34113 -	chr3R	5927674	intron	CG34113 -	chr3R	5927807	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-40
2214	chr3R	5927556	5927586	chr3R	5927801	5927831	pogo	17	254	4.0	7.5	5.8	2.5	275	chr3R	5927556	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_17_5925001	chr3R_5925001	RAL-40
2222	chr3R	6015960	6015995	chr3R	6024441	6024445	Tirant	8	8480	1.5	1.5	1.5	3.2	8485	chr3R	6015960	intergenic	not near genes	chr3R	6020202	intergenic	not near genes	chr3R	6024445	intergenic	not near genes	chr3R_8_6020001	chr3R_6020001	RAL-40
2225	chr3R	6121166	6121183	chr3R	6121404	6121421	BS	8	238	0.0	18.5	9.2	0.8	255	chr3R	6121166	intergenic	not near genes	chr3R	6121294	intergenic	not near genes	chr3R	6121421	intergenic	not near genes	chr3R_8_6120001	chr3R_6120001	RAL-40
2227	chr3R	6158492	6158539	chr3R	6167095	6167142	Tirant	13	8598	2.0	5.0	3.5	2.9	8650	chr3R	6158492	intergenic	not near genes	chr3R	6162817	intergenic	not near genes	chr3R	6167142	intergenic	CG1077 +	chr3R_13_6160001	chr3R_6160001	RAL-40
2229	chr3R	6175155	6175204	chr3R	6182447	6182472	HMS-Beagle2	28	7286	5.5	5.5	5.5	4.3	7317	chr3R	6175155	intergenic	Osi1 +	chr3R	6178814	intron	CR45194 +	chr3R	6182472	intergenic	CR45194 +	chr3R_28_6175001	chr3R_6175001	RAL-40
2232	chr3R	6510010	6510020	chr3R	6515111	6515121	jockey	5	5101	16.0	5.0	10.5	0.4	5111	chr3R	6510010	intergenic	not near genes	chr3R	6512566	intergenic	not near genes	chr3R	6515121	intergenic	not near genes	chr3R_5_6510001	chr3R_6510001	RAL-40
2233	chr3R	6510026	6510050	chr3R	6515103	6515151	jockey	11	5098	12.5	3.5	8.0	1.2	5125	chr3R	6510026	intergenic	not near genes	chr3R	6512588	intergenic	not near genes	chr3R	6515151	intergenic	not near genes	chr3R_11_6510001	chr3R_6510001	RAL-40
2244	chr3R	6737516	6737526	chr3R	6739300	6739333	Doc	8	1799	2.5	9.5	6.0	1.1	1817	chr3R	6737516	intron	pb -	chr3R	6738424	intron	pb -	chr3R	6739333	intron	pb -	chr3R_8_6735001	chr3R_6735001	RAL-40
2275	chr3R	7694557	7694610	chr3R	7713638	7713691	invader3	32	19081	3.5	6.5	5.0	5.3	19134	chr3R	7694557	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713691	intergenic	not near genes	chr3R_32_7700001	chr3R_7700001	RAL-40
2277	chr3R	7729447	7729460	chr3R	7737405	7737418	Stalker2	8	7958	12.5	6.0	9.2	0.8	7971	chr3R	7729447	intergenic	not near genes	chr3R	7733432	intergenic	not near genes	chr3R	7737418	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-40
2278	chr3R	7729461	7729498	chr3R	7737404	7737456	Stalker2	18	7955	5.5	6.0	5.8	2.6	7995	chr3R	7729461	intergenic	not near genes	chr3R	7733458	intergenic	not near genes	chr3R	7737456	intergenic	not near genes	chr3R_18_7730001	chr3R_7730001	RAL-40
2283	chr3R	7849631	7849673	chr3R	7850817	7850860	1360	15	1186	4.5	9.5	7.0	1.9	1229	chr3R	7849631	intron	CG34384 +	chr3R	7850246	intron	CG34384 +	chr3R	7850860	intron	CG34384 +	chr3R_15_7850001	chr3R_7850001	RAL-40
2286	chr3R	7973300	7973349	chr3R	7974380	7974433	1360	16	1083	6.5	7.0	6.8	2.1	1133	chr3R	7973300	intergenic	not near genes	chr3R	7973866	intergenic	not near genes	chr3R	7974433	3` UTR	CD98hc -	chr3R_16_7970001	chr3R_7970001	RAL-40
2291	chr3R	8090546	8090569	chr3R	8094043	8094058	297	11	3496	7.5	14.5	11.0	0.9	3512	chr3R	8090546	intergenic	CR44330 +	chr3R	8092302	intergenic	not near genes	chr3R	8094058	intergenic	CG7900 +	chr3R_11_8090001	chr3R_8090001	RAL-40
2292	chr3R	8094390	8094435	chr3R	8099715	8099760	Transpac	21	5324	9.0	7.5	8.2	2.3	5370	chr3R	8094390	intron	CG7900 +	chr3R	8097075	intron	CG7900 +	chr3R	8099760	intron	CG7900 +	chr3R_21_8095001	chr3R_8095001	RAL-40
2293	chr3R	8101742	8101789	chr3R	8104846	8104893	G2	16	3098	3.5	3.5	3.5	3.6	3151	chr3R	8101742	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104893	3` UTR	CG7900 +	chr3R_16_8100001	chr3R_8100001	RAL-40
2294	chr3R	8207535	8207585	chr3R	8208400	8208429	F-element	10	855	6.5	7.5	7.0	1.2	894	chr3R	8207535	intergenic	not near genes	chr3R	8207982	intergenic	not near genes	chr3R	8208429	intergenic	not near genes	chr3R_10_8205001	chr3R_8205001	RAL-40
2302	chr3R	8402996	8403040	chr3R	8412176	8412215	roo	18	9181	3.0	4.5	3.8	3.8	9219	chr3R	8402996	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412215	intron	CG45263 -	chr3R_18_8405001	chr3R_8405001	RAL-40
2309	chr3R	8570461	8570472	chr3R	8575116	8575128	HMS-Beagle	7	4655	13.0	9.0	11.0	0.6	4667	chr3R	8570461	intergenic	not near genes	chr3R	8572794	intergenic	not near genes	chr3R	8575128	intergenic	not near genes	chr3R_7_8570001	chr3R_8570001	RAL-40
2310	chr3R	8570477	8570510	chr3R	8575113	8575114	HMS-Beagle	20	4645	5.0	7.5	6.2	2.8	4637	chr3R	8570477	intergenic	not near genes	chr3R	8572796	intergenic	not near genes	chr3R	8575114	intergenic	not near genes	chr3R_20_8570001	chr3R_8570001	RAL-40
2312	chr3R	8601756	8601768	chr3R	8610929	8610931	roo	5	9169	17.0	10.5	13.8	0.3	9175	chr3R	8601756	intron	5-HT2B +	chr3R	8606344	intron	5-HT2B +	chr3R	8610931	intron	5-HT2B +	chr3R_5_8605001	chr3R_8605001	RAL-40
2313	chr3R	8601772	8601799	chr3R	8610928	8610971	roo	14	9164	7.0	10.5	8.8	1.4	9199	chr3R	8601772	intron	5-HT2B +	chr3R	8606372	intron	5-HT2B +	chr3R	8610971	intron	5-HT2B +	chr3R_14_8605001	chr3R_8605001	RAL-40
2316	chr3R	8707337	8707383	chr3R	8709798	8709844	jockey	20	2461	3.5	4.5	4.0	4.0	2507	chr3R	8707337	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709844	intergenic	not near genes	chr3R_20_8705001	chr3R_8705001	RAL-40
2319	chr3R	8894855	8894903	chr3R	8896030	8896079	1360	21	1174	7.0	9.5	8.2	2.3	1224	chr3R	8894855	intron	pyd -	chr3R	8895467	intron	pyd -	chr3R	8896079	intron	pyd -	chr3R_21_8895001	chr3R_8895001	RAL-40
2331	chr3R	9278790	9278811	chr3R	9284060	9284072	Rt1a	11	5274	0.5	11.5	6.0	1.6	5282	chr3R	9278790	intergenic	not near genes	chr3R	9281431	intergenic	not near genes	chr3R	9284072	intergenic	not near genes	chr3R_11_9280001	chr3R_9280001	RAL-40
2332	chr3R	9319559	9319577	chr3R	9320014	9320032	jockey	16	454	19.0	10.5	14.8	1.0	473	chr3R	9319559	intron	CG8861 -	chr3R	9319796	intron	CG8861 -	chr3R	9320032	intron	CG8861 -	chr3R_16_9315001	chr3R_9315001	RAL-40
2333	chr3R	9319579	9319601	chr3R	9320008	9320056	jockey	16	453	12.0	10.5	11.2	1.3	477	chr3R	9319579	intron	CG8861 -	chr3R	9319818	intron	CG8861 -	chr3R	9320056	intron	CG8861 -	chr3R_16_9315001	chr3R_9315001	RAL-40
2334	chr3R	9361804	9361845	chr3R	9362064	9362106	pogo	29	259	5.0	9.5	7.2	3.5	302	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361955	3` UTR	CG45050 +	chr3R	9362106	3` UTR	CG45050 +	chr3R_29_9360001	chr3R_9360001	RAL-40
2345	chr3R	9699960	9700004	chr3R	9700069	9700103	1360	29	106	8.0	12.5	10.2	2.6	143	chr3R	9699960	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700103	intron	Unc-115a -	chr3R_29_9700001	chr3R_9700001	RAL-40
2351	chr3R	10231762	10231814	chr3R	10237359	10237406	mdg3	33	5592	3.0	5.0	4.0	6.6	5644	chr3R	10231762	intron	CG42795 +	chr3R	10234584	intron	CG42795 +	chr3R	10237406	intron	CG42795 +	chr3R_33_10230001	chr3R_10230001	RAL-40
2352	chr3R	10255362	10255376	chr3R	10260822	10260836	I-element	7	5458	18.0	9.0	13.5	0.5	5474	chr3R	10255362	3` UTR	Sirt6 -	chr3R	10258099	intron	Sirt6 -	chr3R	10260836	exon	Sirt6 -	chr3R_7_10255001	chr3R_10255001	RAL-40
2362	chr3R	10804155	10804193	chr3R	10811707	10811745	17.6	15	7551	5.0	3.5	4.2	2.9	7590	chr3R	10804155	intergenic	CG14692 -	chr3R	10807950	intergenic	not near genes	chr3R	10811745	3` UTR	CG14693 -	chr3R_15_10805001	chr3R_10805001	RAL-40
2375	chr3R	11065594	11065607	chr3R	11071261	11071281	297	5	5670	4.0	9.5	6.8	0.6	5687	chr3R	11065594	intergenic	not near genes	chr3R	11068438	intergenic	not near genes	chr3R	11071281	intergenic	not near genes	chr3R_5_11065001	chr3R_11065001	RAL-40
2382	chr3R	11379219	11379241	chr3R	11388394	11388416	roo	11	9174	14.5	3.5	9.0	1.1	9197	chr3R	11379219	intron	pros +	chr3R	11383818	intron	pros +	chr3R	11388416	intron	pros +	chr3R_11_11380001	chr3R_11380001	RAL-40
2383	chr3R	11379243	11379261	chr3R	11388392	11388419	roo	10	9168	12.0	3.5	7.8	1.1	9176	chr3R	11379243	intron	pros +	chr3R	11383831	intron	pros +	chr3R	11388419	intron	pros +	chr3R_10_11380001	chr3R_11380001	RAL-40
2394	chr3R	11841059	11841087	chr3R	11846253	11846283	BS	11	5200	4.0	5.5	4.8	1.9	5224	chr3R	11841059	intron	CG6959 -	chr3R	11843671	intron	CG6959 -	chr3R	11846283	intron	CG6959 -	chr3R_11_11840001	chr3R_11840001	RAL-40
2399	chr3R	12022863	12022910	chr3R	12025060	12025107	pogo	27	2194	7.0	6.5	6.8	3.5	2244	chr3R	12022863	intergenic	not near genes	chr3R	12023985	intergenic	not near genes	chr3R	12025107	intergenic	not near genes	chr3R_27_12020001	chr3R_12020001	RAL-40
2415	chr3R	12864552	12864587	chr3R	12865057	12865092	roo	4	505	1.0	3.0	2.0	1.3	540	chr3R	12864552	intergenic	not near genes	chr3R	12864822	intergenic	not near genes	chr3R	12865092	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-40
2416	chr3R	12920143	12920183	chr3R	12925366	12925384	copia	14	5212	3.0	9.5	6.2	1.9	5241	chr3R	12920143	intron	beat-Vb +	chr3R	12922764	intron	beat-Vb +	chr3R	12925384	intron	beat-Vb +	chr3R_14_12920001	chr3R_12920001	RAL-40
2417	chr3R	12920184	12920185	chr3R	12925357	12925403	copia	10	5198	2.5	8.0	5.2	1.6	5219	chr3R	12920184	intron	beat-Vb +	chr3R	12922794	intron	beat-Vb +	chr3R	12925403	intron	beat-Vb +	chr3R_10_12920001	chr3R_12920001	RAL-40
2427	chr3R	13135816	13135841	chr3R	13138001	13138025	pogo	10	2185	6.5	4.5	5.5	1.5	2209	chr3R	13135816	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136920	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138025	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_10_13135001	chr3R_13135001	RAL-40
2429	chr3R	13143028	13143061	chr3R	13148617	13148657	mdg3	6	5590	5.0	4.0	4.5	1.1	5629	chr3R	13143028	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148657	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13145001	chr3R_13145001	RAL-40
2430	chr3R	13314076	13314127	chr3R	13318883	13318894	Doc	15	4805	7.0	7.0	7.0	1.9	4818	chr3R	13314076	intergenic	not near genes	chr3R	13316485	intergenic	not near genes	chr3R	13318894	intergenic	CG45080 -	chr3R_15_13315001	chr3R_13315001	RAL-40
2439	chr3R	13517206	13517212	chr3R	13520043	13520049	jockey	4	2837	17.5	0.0	8.8	0.4	2843	chr3R	13517206	intergenic	not near genes	chr3R	13518628	intergenic	not near genes	chr3R	13520049	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	RAL-40
2440	chr3R	13517215	13517259	chr3R	13520042	13520096	jockey	7	2835	4.0	0.0	2.0	2.3	2881	chr3R	13517215	intergenic	not near genes	chr3R	13518656	intergenic	not near genes	chr3R	13520096	intergenic	not near genes	chr3R_7_13515001	chr3R_13515001	RAL-40
2456	chr3R	14021621	14021661	chr3R	14023466	14023506	S-element	15	1843	8.5	7.5	8.0	1.7	1885	chr3R	14021621	intron	rdx -	chr3R	14022564	intron	rdx -	chr3R	14023506	intron	rdx -	chr3R_15_14020001	chr3R_14020001	RAL-40
2461	chr3R	14180796	14180811	chr3R	14185581	14185596	F-element	9	4784	12.5	0.0	6.2	1.2	4800	chr3R	14180796	intron	Dop1R1 -	chr3R	14183196	intron	Dop1R1 -	chr3R	14185596	intron	Dop1R1 -	chr3R_9_14180001	chr3R_14180001	RAL-40
2462	chr3R	14194408	14194455	chr3R	14203576	14203624	roo	29	9167	9.0	7.5	8.2	3.2	9216	chr3R	14194408	intron	Dop1R1 -	chr3R	14199016	intron	Dop1R1 -	chr3R	14203624	intron	Dop1R1 -	chr3R_29_14195001	chr3R_14195001	RAL-40
2464	chr3R	14246372	14246408	chr3R	14247888	14247890	jockey	8	1505	7.0	7.5	7.2	1.0	1518	chr3R	14246372	intergenic	not near genes	chr3R	14247131	intergenic	not near genes	chr3R	14247890	intergenic	not near genes	chr3R_8_14245001	chr3R_14245001	RAL-40
2465	chr3R	14246411	14246417	chr3R	14247883	14247909	jockey	6	1491	5.0	6.0	5.5	0.9	1498	chr3R	14246411	intergenic	not near genes	chr3R	14247160	intergenic	not near genes	chr3R	14247909	intergenic	not near genes	chr3R_6_14245001	chr3R_14245001	RAL-40
2492	chr3R	15041398	15041417	chr3R	15045202	15045221	Doc	7	3804	0.0	3.5	1.8	2.5	3823	chr3R	15041398	intergenic	not near genes	chr3R	15043310	intergenic	not near genes	chr3R	15045221	intergenic	not near genes	chr3R_7_15040001	chr3R_15040001	RAL-40
2494	chr3R	15059267	15059274	chr3R	15059498	15059500	BS	5	230	2.0	0.0	1.0	2.5	233	chr3R	15059267	intron	dpr9 -	chr3R	15059384	intron	dpr9 -	chr3R	15059500	intron	dpr9 -	chr3R_5_15055001	chr3R_15055001	RAL-40
2496	chr3R	15079791	15079813	chr3R	15080052	15080074	pogo	10	261	13.5	9.5	11.5	0.8	283	chr3R	15079791	3` UTR	CG6966 -	chr3R	15079932	3` UTR	CG6966 -	chr3R	15080074	3` UTR	CG6966 -	chr3R_10_15075001	chr3R_15075001	RAL-40
2497	chr3R	15079818	15079836	chr3R	15080050	15080096	pogo	8	257	8.0	9.0	8.5	0.8	278	chr3R	15079818	3` UTR	CG6966 -	chr3R	15079957	3` UTR	CG6966 -	chr3R	15080096	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RAL-40
2500	chr3R	15102492	15102530	chr3R	15109770	15109804	412	15	7276	5.0	8.0	6.5	2.0	7312	chr3R	15102492	intron	CG42788 -	chr3R	15106148	intron	CG42788 -	chr3R	15109804	intron	CG42788 -	chr3R_15_15105001	chr3R_15105001	RAL-40
2503	chr3R	15132045	15132059	chr3R	15135125	15135139	Juan	20	3080	29.0	28.0	28.5	0.7	3094	chr3R	15132045	intergenic	CG42788 -	chr3R	15133592	intergenic	not near genes	chr3R	15135139	3` UTR	CG6912 -	chr3R_20_15130001	chr3R_15130001	RAL-40
2504	chr3R	15132061	15132067	chr3R	15135120	15135147	Juan	9	3077	27.5	24.0	25.8	0.3	3086	chr3R	15132061	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135147	3` UTR	CG6912 -	chr3R_9_15130001	chr3R_15130001	RAL-40
2505	chr3R	15132068	15132077	chr3R	15135115	15135157	Juan	7	3071	22.5	21.0	21.8	0.3	3089	chr3R	15132068	intergenic	CG42788 -	chr3R	15133612	intergenic	not near genes	chr3R	15135157	3` UTR	CG6912 -	chr3R_7_15130001	chr3R_15130001	RAL-40
2507	chr3R	15162526	15162540	chr3R	15167312	15167328	F-element	11	4787	24.5	7.0	15.8	0.7	4802	chr3R	15162526	intron	Gyc88E +	chr3R	15164927	intron	Gyc88E +	chr3R	15167328	intron	Gyc88E +	chr3R_11_15160001	chr3R_15160001	RAL-40
2508	chr3R	15162541	15162555	chr3R	15167309	15167333	F-element	7	4784	20.5	7.0	13.8	0.5	4792	chr3R	15162541	intron	Gyc88E +	chr3R	15164937	intron	Gyc88E +	chr3R	15167333	intron	Gyc88E +	chr3R_7_15160001	chr3R_15160001	RAL-40
2517	chr3R	15601155	15601195	chr3R	15608687	15608737	412	23	7540	8.5	7.0	7.8	2.6	7582	chr3R	15601155	intergenic	not near genes	chr3R	15604946	intergenic	not near genes	chr3R	15608737	intergenic	not near genes	chr3R_23_15600001	chr3R_15600001	RAL-40
2518	chr3R	15618710	15618761	chr3R	15626204	15626255	blood	23	7491	3.0	6.5	4.8	4.0	7545	chr3R	15618710	intergenic	not near genes	chr3R	15622482	intergenic	not near genes	chr3R	15626255	intergenic	not near genes	chr3R_23_15620001	chr3R_15620001	RAL-40
2522	chr3R	15735226	15735234	chr3R	15739966	15739974	F-element	6	4740	7.0	7.5	7.2	0.7	4748	chr3R	15735226	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739974	intergenic	not near genes	chr3R_6_15735001	chr3R_15735001	RAL-40
2546	chr3R	16756299	16756348	chr3R	16762510	16762536	diver	15	6203	3.5	3.5	3.5	3.3	6237	chr3R	16756299	intron	bxd -	chr3R	16759418	intron	bxd -	chr3R	16762536	intron	bxd -	chr3R_15_16755001	chr3R_16755001	RAL-40
2555	chr3R	17346674	17346715	chr3R	17348257	17348298	F-element	18	1583	7.5	4.5	6.0	2.6	1624	chr3R	17346674	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348298	intron	beat-IIa -	chr3R_18_17345001	chr3R_17345001	RAL-40
2566	chr3R	17591264	17591301	chr3R	17591720	17591731	F-element	7	450	7.0	5.0	6.0	1.0	467	chr3R	17591264	intergenic	not near genes	chr3R	17591498	intergenic	not near genes	chr3R	17591731	intergenic	not near genes	chr3R_7_17590001	chr3R_17590001	RAL-40
2567	chr3R	17638297	17638303	chr3R	17638803	17638809	roo	6	506	20.0	9.0	14.5	0.4	512	chr3R	17638297	intron	CG43175 +	chr3R	17638553	intron	CG43175 +	chr3R	17638809	intron,5` UTR	CG43175 +,CR45222 +	chr3R_6_17635001	chr3R_17635001	RAL-40
2568	chr3R	17638306	17638351	chr3R	17638802	17638814	roo	14	502	6.5	9.0	7.8	1.6	508	chr3R	17638306	intron	CG43175 +	chr3R	17638560	intron	CG43175 +	chr3R	17638814	intron,intron	CG43175 +,CR45222 +	chr3R_14_17635001	chr3R_17635001	RAL-40
2576	chr3R	17925834	17925888	chr3R	17927321	17927340	hobo	18	1481	3.0	7.5	5.2	2.9	1506	chr3R	17925834	intron	cpo +	chr3R	17926587	intron	cpo +	chr3R	17927340	intron	cpo +	chr3R_18_17925001	chr3R_17925001	RAL-40
2581	chr3R	18061553	18061559	chr3R	18063147	18063153	F-element	8	1594	0.0	0.0	0.0	8.0	1600	chr3R	18061553	intergenic	not near genes	chr3R	18062353	intergenic	not near genes	chr3R	18063153	intergenic	not near genes	chr3R_8_18060001	chr3R_18060001	RAL-40
2593	chr3R	18606483	18606529	chr3R	18610735	18610781	F-element	24	4251	4.0	5.5	4.8	4.1	4298	chr3R	18606483	intron,intron	qin +,CG14304 -	chr3R	18608632	intron,intron	qin +,CG14304 -	chr3R	18610781	intron,intron	qin +,CG14304 -	chr3R_24_18605001	chr3R_18605001	RAL-40
2622	chr3R	20109518	20109568	chr3R	20114744	20114794	copia	17	5226	5.0	6.5	5.8	2.5	5276	chr3R	20109518	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114794	intergenic	CG10887 +	chr3R_17_20110001	chr3R_20110001	RAL-40
2623	chr3R	20156696	20156712	chr3R	20165866	20165902	roo	12	9188	8.5	9.0	8.8	1.2	9206	chr3R	20156696	intergenic	not near genes	chr3R	20161299	intergenic	not near genes	chr3R	20165902	intergenic	not near genes	chr3R_12_20160001	chr3R_20160001	RAL-40
2631	chr3R	20245273	20245305	chr3R	20248891	20248935	F-element	9	3625	0.0	2.5	1.2	4.1	3662	chr3R	20245273	3` UTR	Nlg4 +	chr3R	20247104	intergenic	not near genes	chr3R	20248935	intergenic	not near genes	chr3R_9_20245001	chr3R_20245001	RAL-40
2634	chr3R	20266506	20266541	chr3R	20272986	20273032	Burdock	12	6490	0.5	9.5	5.0	2.0	6526	chr3R	20266506	intron	cic +	chr3R	20269769	intron	cic +	chr3R	20273032	intron	cic +	chr3R_12_20265001	chr3R_20265001	RAL-40
2638	chr3R	20330982	20331029	chr3R	20331488	20331535	roo	23	505	7.5	7.0	7.2	2.8	553	chr3R	20330982	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331535	intergenic	not near genes	chr3R_23_20330001	chr3R_20330001	RAL-40
2644	chr3R	20512974	20513004	chr3R	20515706	20515736	opus	13	2732	2.5	0.0	1.2	5.9	2762	chr3R	20512974	intergenic	not near genes	chr3R	20514355	intergenic	not near genes	chr3R	20515736	intergenic	not near genes	chr3R_13_20510001	chr3R_20510001	RAL-40
2659	chr3R	20854461	20854511	chr3R	20859276	20859321	Doc	6	4814	5.0	7.5	6.2	0.8	4860	chr3R	20854461	intron	Ir93a -	chr3R	20856891	intron	Ir93a -	chr3R	20859321	exon	Ir93a -	chr3R_6_20855001	chr3R_20855001	RAL-40
2666	chr3R	21141660	21141694	chr3R	21150161	21150177	Tirant	9	8491	8.0	4.0	6.0	1.3	8517	chr3R	21141660	intron	SNF4Agamma +	chr3R	21145918	intron	SNF4Agamma +	chr3R	21150177	intron	SNF4Agamma +	chr3R_9_21145001	chr3R_21145001	RAL-40
2687	chr3R	21761125	21761155	chr3R	21768517	21768567	mdg1	11	7403	7.5	8.0	7.8	1.2	7442	chr3R	21761125	exon	CG42335 +	chr3R	21764846	intron	CG42335 +	chr3R	21768567	exon	CG42335 +	chr3R_11_21760001	chr3R_21760001	RAL-40
2703	chr3R	22239471	22239521	chr3R	22248551	22248598	roo	13	9079	8.5	5.5	7.0	1.6	9127	chr3R	22239471	intron	SKIP +	chr3R	22244034	intron	SKIP +	chr3R	22248598	intron	SKIP +	chr3R_13_22240001	chr3R_22240001	RAL-40
2711	chr3R	22450526	22450542	chr3R	22453186	22453202	NOF	6	2657	13.5	18.0	15.8	0.4	2676	chr3R	22450526	intron	CG34376 +	chr3R	22451864	intron	CG34376 +	chr3R	22453202	intron	CG34376 +	chr3R_6_22450001	chr3R_22450001	RAL-40
2712	chr3R	22450546	22450573	chr3R	22453181	22453233	NOF	12	2653	6.5	14.5	10.5	1.0	2687	chr3R	22450546	intron	CG34376 +	chr3R	22451890	intron	CG34376 +	chr3R	22453233	intron	CG34376 +	chr3R_12_22450001	chr3R_22450001	RAL-40
2720	chr3R	22881187	22881219	chr3R	22884908	22884945	Doc	9	3723	10.5	7.0	8.8	0.9	3758	chr3R	22881187	intergenic	not near genes	chr3R	22883066	intergenic	not near genes	chr3R	22884945	intergenic	not near genes	chr3R_9_22880001	chr3R_22880001	RAL-40
2737	chr3R	23558379	23558429	chr3R	23560180	23560230	Bari1	30	1799	3.5	6.0	4.8	5.2	1851	chr3R	23558379	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560230	intron	beat-IV +	chr3R_30_23555001	chr3R_23555001	RAL-40
2739	chr3R	23684706	23684729	chr3R	23685182	23685224	roo	11	484	4.0	2.5	3.2	2.6	518	chr3R	23684706	intron	CG18754 +	chr3R	23684965	intron	CG18754 +	chr3R	23685224	exon	CG18754 +	chr3R_11_23680001	chr3R_23680001	RAL-40
2743	chr3R	23835390	23835430	chr3R	23844560	23844569	roo	7	9160	6.5	1.5	4.0	1.4	9179	chr3R	23835390	intron	CG34355 +	chr3R	23839980	intron	CG34355 +	chr3R	23844569	intron	CG34355 +	chr3R_7_23835001	chr3R_23835001	RAL-40
2744	chr3R	23851072	23851081	chr3R	23858759	23858768	opus	6	7687	7.0	14.0	10.5	0.5	7696	chr3R	23851072	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858768	intergenic	not near genes	chr3R_6_23850001	chr3R_23850001	RAL-40
2753	chr3R	24072065	24072109	chr3R	24072523	24072561	jockey	8	455	12.5	10.5	11.5	0.6	496	chr3R	24072065	intron	4EHP -	chr3R	24072313	intron	4EHP -	chr3R	24072561	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	RAL-40
2754	chr3R	24076904	24076942	chr3R	24078383	24078429	hobo	17	1486	6.5	4.5	5.5	2.6	1525	chr3R	24076904	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078429	intron	4EHP -	chr3R_17_24075001	chr3R_24075001	RAL-40
2755	chr3R	24207205	24207241	chr3R	24212294	24212337	flea	21	5093	8.5	16.5	12.5	1.6	5132	chr3R	24207205	intron	twin -	chr3R	24209771	intron	twin -	chr3R	24212337	intron	twin -	chr3R_21_24205001	chr3R_24205001	RAL-40
2758	chr3R	24493258	24493305	chr3R	24493507	24493554	BS	26	248	9.0	12.0	10.5	2.3	296	chr3R	24493258	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493554	intergenic	not near genes	chr3R_26_24490001	chr3R_24490001	RAL-40
2761	chr3R	24594657	24594666	chr3R	24594917	24594926	pogo	4	260	5.0	7.5	6.2	0.6	269	chr3R	24594657	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594926	intron	mld +	chr3R_4_24590001	chr3R_24590001	RAL-40
2765	chr3R	24730076	24730119	chr3R	24732474	24732492	Doc	18	2392	6.0	0.0	3.0	4.5	2416	chr3R	24730076	intron	tok +	chr3R	24731284	intron	tok +	chr3R	24732492	intron	tok +	chr3R_18_24730001	chr3R_24730001	RAL-40
2770	chr3R	24927107	24927152	chr3R	24931918	24931963	Doc	21	4811	8.5	6.0	7.2	2.6	4856	chr3R	24927107	intergenic	Trf4-2 +	chr3R	24929535	intergenic	not near genes	chr3R	24931963	intergenic	CG11771 +	chr3R_21_24925001	chr3R_24925001	RAL-40
2791	chr3R	25725819	25725862	chr3R	25734999	25735042	roo	10	9179	3.5	9.0	6.2	1.4	9223	chr3R	25725819	intron	LpR2 -	chr3R	25730430	intron	LpR2 -	chr3R	25735042	intron	LpR2 -	chr3R_10_25730001	chr3R_25730001	RAL-40
2796	chr3R	25832678	25832722	chr3R	25841880	25841924	roo	10	9200	3.0	8.0	5.5	1.5	9246	chr3R	25832678	exon	alpha4GT2 +	chr3R	25837301	intron	alpha4GT2 +	chr3R	25841924	exon	alpha4GT2 +	chr3R_10_25835001	chr3R_25835001	RAL-40
2805	chr3R	26376306	26376352	chr3R	26385486	26385532	roo	32	9174	5.0	10.5	7.8	3.6	9226	chr3R	26376306	intergenic	not near genes	chr3R	26380919	intergenic	not near genes	chr3R	26385532	intergenic	not near genes	chr3R_32_26380001	chr3R_26380001	RAL-40
2806	chr3R	26510498	26510519	chr3R	26519578	26519598	roo	12	9079	9.0	5.5	7.2	1.5	9100	chr3R	26510498	intron	plum -	chr3R	26515048	intron	plum -	chr3R	26519598	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	RAL-40
2808	chr3R	26558307	26558358	chr3R	26565639	26565683	Stalker4	17	7322	4.5	4.0	4.2	3.3	7376	chr3R	26558307	intron	scrib +	chr3R	26561995	intron	scrib +	chr3R	26565683	intron	scrib +	chr3R_17_26560001	chr3R_26560001	RAL-40
2811	chr3R	26642711	26642760	chr3R	26643124	26643169	jockey	19	412	10.5	6.0	8.2	2.1	458	chr3R	26642711	intergenic	not near genes	chr3R	26642940	intergenic	not near genes	chr3R	26643169	intergenic	not near genes	chr3R_19_26640001	chr3R_26640001	RAL-40
2814	chr3R	26810531	26810582	chr3R	26811036	26811079	roo	19	505	7.0	9.5	8.2	2.1	548	chr3R	26810531	intron	Tl +	chr3R	26810805	intron	Tl +	chr3R	26811079	intron	Tl +	chr3R_19_26810001	chr3R_26810001	RAL-40
2818	chr3R	27007391	27007435	chr3R	27016546	27016590	roo	19	9152	6.0	11.5	8.8	1.9	9199	chr3R	27007391	intron	RYa-R +	chr3R	27011990	intron	RYa-R +	chr3R	27016590	intron	RYa-R +	chr3R_19_27010001	chr3R_27010001	RAL-40
2825	chr3R	27140493	27140544	chr3R	27148123	27148174	412	25	7624	6.5	7.0	6.8	3.2	7681	chr3R	27140493	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148174	intron	CG6051 -	chr3R_25_27140001	chr3R_27140001	RAL-40
2831	chr3R	27342776	27342825	chr3R	27351377	27351391	Tirant	22	8597	5.0	3.5	4.2	4.2	8615	chr3R	27342776	intron	CG42534 +	chr3R	27347084	intron	CG42534 +	chr3R	27351391	intron	CG42534 +	chr3R_22_27345001	chr3R_27345001	RAL-40
2837	chr3R	27521137	27521185	chr3R	27530366	27530382	roo	4	9221	7.0	1.0	4.0	0.8	9245	chr3R	27521137	intron	CG12885 +	chr3R	27525760	intron	CG12885 +	chr3R	27530382	intron	CG12885 +	chr3R_4_27525001	chr3R_27525001	RAL-40
2844	chr3R	27725554	27725564	chr3R	27731016	27731025	I-element	5	5461	7.0	9.5	8.2	0.5	5471	chr3R	27725554	intergenic	not near genes	chr3R	27728290	intergenic	not near genes	chr3R	27731025	intergenic	not near genes	chr3R_5_27725001	chr3R_27725001	RAL-40
2845	chr3R	27725565	27725593	chr3R	27731015	27731055	I-element	11	5461	3.5	9.0	6.2	1.5	5490	chr3R	27725565	intergenic	not near genes	chr3R	27728310	intergenic	not near genes	chr3R	27731055	intergenic	not near genes	chr3R_11_27725001	chr3R_27725001	RAL-40
2849	chr3R	27856739	27856791	chr3R	27858242	27858283	hopper2	22	1500	8.0	4.5	6.2	3.1	1544	chr3R	27856739	intron	CG34353 -	chr3R	27857511	intron	CG34353 -	chr3R	27858283	intron	CG34353 -	chr3R_22_27855001	chr3R_27855001	RAL-40
2850	chr3R	27862937	27862987	chr3R	27868262	27868266	Transpac	23	5311	8.0	11.0	9.5	2.2	5329	chr3R	27862937	intron	CG34353 -	chr3R	27865602	intron	CG34353 -	chr3R	27868266	intron	CG34353 -	chr3R_23_27865001	chr3R_27865001	RAL-40
2851	chr3R	27875681	27875728	chr3R	27882756	27882803	297	20	7074	7.5	9.0	8.2	2.2	7122	chr3R	27875681	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882803	intron	CG34353 -	chr3R_20_27875001	chr3R_27875001	RAL-40
2854	chr3R	28068474	28068523	chr3R	28073936	28073985	I-element	17	5459	0.0	5.0	2.5	4.9	5511	chr3R	28068474	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073985	intron	CG34362 +	chr3R_17_28070001	chr3R_28070001	RAL-40
2858	chr3R	28173654	28173703	chr3R	28181104	28181153	mdg1	15	7450	2.5	2.5	2.5	4.3	7499	chr3R	28173654	intron	CG34354 +	chr3R	28177404	intron	CG34354 +	chr3R	28181153	intron	CG34354 +	chr3R_15_28175001	chr3R_28175001	RAL-40
2859	chr3R	28253341	28253370	chr3R	28255854	28255864	jockey	14	2525	2.5	7.5	5.0	2.3	2523	chr3R	28253341	intergenic	not near genes	chr3R	28254602	intergenic	not near genes	chr3R	28255864	intergenic	not near genes	chr3R_14_28250001	chr3R_28250001	RAL-40
2861	chr3R	28302085	28302129	chr3R	28302544	28302588	jockey	32	458	10.0	8.0	9.0	3.2	503	chr3R	28302085	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302588	intergenic	not near genes	chr3R_32_28300001	chr3R_28300001	RAL-40
2867	chr3R	28758274	28758283	chr3R	28763911	28763920	roo	8	5637	17.5	0.0	8.8	0.8	5646	chr3R	28758274	intergenic	aqrs -	chr3R	28761097	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_8_28760001	chr3R_28760001	RAL-40
2868	chr3R	28758305	28758317	chr3R	28771332	28771344	Stalker4	4	13027	5.5	5.0	5.2	0.6	13039	chr3R	28758305	intergenic	aqrs -	chr3R	28764824	intergenic	not near genes	chr3R	28771344	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-40
2869	chr3R	28763902	28763920	chr3R	28771365	28771377	Stalker4	7	7462	0.0	14.5	7.2	0.9	7475	chr3R	28763902	intergenic	not near genes	chr3R	28767640	intergenic	not near genes	chr3R	28771377	intergenic	not near genes	chr3R_7_28765001	chr3R_28765001	RAL-40
2870	chr3R	28792879	28792901	chr3R	28797978	28798016	jockey	14	5107	2.0	10.5	6.2	1.9	5137	chr3R	28792879	intergenic	not near genes	chr3R	28795448	intergenic	not near genes	chr3R	28798016	intergenic	not near genes	chr3R_14_28795001	chr3R_28795001	RAL-40
2879	chr3R	29079360	29079375	chr3R	29080752	29080767	NOF	5	1392	19.5	9.5	14.5	0.3	1407	chr3R	29079360	intron	CG11873 +	chr3R	29080064	intron	CG11873 +	chr3R	29080767	intron	CG11873 +	chr3R_5_29080001	chr3R_29080001	RAL-40
2880	chr3R	29079379	29079405	chr3R	29080751	29080797	NOF	15	1388	11.0	9.5	10.2	1.3	1418	chr3R	29079379	intron	CG11873 +	chr3R	29080088	intron	CG11873 +	chr3R	29080797	intron	CG11873 +	chr3R_15_29080001	chr3R_29080001	RAL-40
2887	chr3R	29319818	29319837	chr3R	29320157	29320176	jockey	9	339	18.5	9.0	13.8	0.6	358	chr3R	29319818	intergenic	Cnx99A -	chr3R	29319997	intergenic	Cnx99A -	chr3R	29320176	intergenic	not near genes	chr3R_9_29315001	chr3R_29315001	RAL-40
2888	chr3R	29319841	29319858	chr3R	29320154	29320178	jockey	8	330	14.0	8.5	11.2	0.7	337	chr3R	29319841	intergenic	Cnx99A -	chr3R	29320010	intergenic	Cnx99A -	chr3R	29320178	intergenic	not near genes	chr3R_8_29320001	chr3R_29320001	RAL-40
2895	chr3R	29406614	29406645	chr3R	29407920	29407935	jockey	9	1302	6.0	10.5	8.2	1.0	1321	chr3R	29406614	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407935	intron	Ptp99A +	chr3R_9_29405001	chr3R_29405001	RAL-40
2905	chr3R	29738243	29738272	chr3R	29739730	29739759	hobo	15	1485	11.0	6.0	8.5	1.6	1516	chr3R	29738243	intergenic	CG1969 +,CG7598 +	chr3R	29739001	intron	CG1969 +	chr3R	29739759	5` UTR	CG1969 +	chr3R_15_29735001	chr3R_29735001	RAL-40
2906	chr3R	29738274	29738291	chr3R	29739729	29739778	hobo	9	1478	8.0	6.0	7.0	1.1	1504	chr3R	29738274	5` UTR	CG1969 +	chr3R	29739026	intron	CG1969 +	chr3R	29739778	5` UTR	CG1969 +	chr3R_9_29735001	chr3R_29735001	RAL-40
2909	chr3R	29760342	29760393	chr3R	29761563	29761614	pogo	27	1218	8.0	4.5	6.2	3.8	1272	chr3R	29760342	intergenic	not near genes	chr3R	29760978	intergenic	not near genes	chr3R	29761614	intergenic	not near genes	chr3R_27_29760001	chr3R_29760001	RAL-40
2911	chr3R	29882001	29882049	chr3R	29891178	29891226	roo	30	9175	9.5	9.0	9.2	2.9	9225	chr3R	29882001	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891226	intron	CG31038 +	chr3R_30_29885001	chr3R_29885001	RAL-40
2919	chr3R	30084842	30084883	chr3R	30086329	30086346	hobo	15	1483	2.5	5.5	4.0	3.0	1504	chr3R	30084842	intron	sima +	chr3R	30085594	intron	sima +	chr3R	30086346	intron	sima +	chr3R_15_30085001	chr3R_30085001	RAL-40
2921	chr3R	30238741	30238784	chr3R	30239925	30239968	1360	28	1183	9.5	0.5	5.0	4.7	1227	chr3R	30238741	intergenic	not near genes	chr3R	30239354	intergenic	not near genes	chr3R	30239968	intergenic	not near genes	chr3R_28_30235001	chr3R_30235001	RAL-40
2926	chr3R	30317329	30317355	chr3R	30324916	30324967	roo	10	7609	5.0	3.0	4.0	2.0	7638	chr3R	30317329	intron	hdc +	chr3R	30321148	intron	hdc +	chr3R	30324967	intron	hdc +	chr3R_10_30320001	chr3R_30320001	RAL-40
2927	chr3R	30375527	30375560	chr3R	30383170	30383203	412	7	7641	5.0	2.5	3.8	1.5	7676	chr3R	30375527	intergenic	not near genes	chr3R	30379365	intergenic	not near genes	chr3R	30383203	intergenic	not near genes	chr3R_7_30375001	chr3R_30375001	RAL-40
2928	chr3R	30396205	30396246	chr3R	30404487	30404531	roo	9	8285	4.0	5.5	4.8	1.6	8326	chr3R	30396205	intergenic	not near genes	chr3R	30400368	intergenic	not near genes	chr3R	30404531	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RAL-40
2936	chr3R	30679497	30679551	chr3R	30686986	30687040	blood	21	7487	1.5	5.5	3.5	4.7	7543	chr3R	30679497	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687040	intergenic	not near genes	chr3R_21_30680001	chr3R_30680001	RAL-40
2937	chr3R	30818790	30818839	chr3R	30820375	30820424	1360	19	1582	8.5	4.5	6.5	2.5	1634	chr3R	30818790	intron	cindr +	chr3R	30819607	intron	cindr +	chr3R	30820424	intron	cindr +	chr3R_19_30815001	chr3R_30815001	RAL-40
2947	chr3R	31074209	31074234	chr3R	31081829	31081839	springer	6	7617	17.5	8.5	13.0	0.4	7630	chr3R	31074209	intron	Sox100B +	chr3R	31078024	intron	Sox100B +	chr3R	31081839	intron	Sox100B +	chr3R_6_31075001	chr3R_31075001	RAL-40
2948	chr3R	31074235	31074261	chr3R	31081827	31081836	springer	14	7609	9.0	8.0	8.5	1.5	7601	chr3R	31074235	intron	Sox100B +	chr3R	31078036	intron	Sox100B +	chr3R	31081836	intron	Sox100B +	chr3R_14_31075001	chr3R_31075001	RAL-40
2954	chr3R	31279372	31279404	chr3R	31285565	31285609	diver	11	6201	7.0	4.0	5.5	1.7	6237	chr3R	31279372	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285609	intergenic	not near genes	chr3R_11_31280001	chr3R_31280001	RAL-40
2955	chr3R	31413073	31413089	chr3R	31418293	31418309	copia	10	5217	8.0	2.5	5.2	1.6	5236	chr3R	31413073	intron	Gprk2 +	chr3R	31415691	intron	Gprk2 +	chr3R	31418309	intron	Gprk2 +	chr3R_10_31415001	chr3R_31415001	RAL-40
2956	chr3R	31413090	31413094	chr3R	31418291	31418314	copia	5	5215	7.0	2.5	4.8	0.9	5224	chr3R	31413090	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418314	intron	Gprk2 +	chr3R_5_31415001	chr3R_31415001	RAL-40
2957	chr3R	31413095	31413119	chr3R	31418289	31418314	copia	7	5208	4.0	2.0	3.0	1.8	5219	chr3R	31413095	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418314	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	RAL-40
2964	chr3R	31691515	31691563	chr3R	31696301	31696328	Doc	16	4777	4.0	4.5	4.2	3.1	4813	chr3R	31691515	intergenic	not near genes	chr3R	31693922	intergenic	not near genes	chr3R	31696328	intergenic	not near genes	chr3R_16_31690001	chr3R_31690001	RAL-40
2974	chr3R	31997975	31998023	chr3R	32005465	32005509	blood	29	7489	5.0	9.0	7.0	3.6	7534	chr3R	31997975	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005509	intron	heph -	chr3R_29_32000001	chr3R_32000001	RAL-40
2975	chr4	76479	76511	chr4	81942	81974	I-element	9	5462	17.0	9.5	13.2	0.6	5495	chr4	76479	intron	pan +	chr4	79226	intron	pan +	chr4	81974	intron	pan +	chr4_9_75001	chr4_75001	RAL-40
2979	chr4	319972	320019	chr4	328168	328215	Stalker2	13	8195	8.0	8.0	8.0	1.4	8243	chr4	319972	3` UTR	CG32850 +	chr4	324094	intron	CG32850 +	chr4	328215	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_13_320001	chr4_320001	RAL-40
2982	chr4	662166	662202	chr4	662831	662867	INE-1	14	663	5.5	5.0	5.2	2.3	701	chr4	662166	intron	gw -	chr4	662516	intron	gw -	chr4	662867	5` UTR	gw -	chr4_14_660001	chr4_660001	RAL-40
2983	chr4	671601	671612	chr4	680199	680215	Tirant	9	8600	14.5	9.5	12.0	0.7	8614	chr4	671601	intron	CG11360 +	chr4	675908	intron	CG11360 +	chr4	680215	intron	CG11360 +	chr4_9_675001	chr4_675001	RAL-40
2984	chr4	671613	671633	chr4	680186	680231	Tirant	15	8594	9.5	7.5	8.5	1.6	8618	chr4	671613	intron	CG11360 +	chr4	675922	intron	CG11360 +	chr4	680231	intron	CG11360 +	chr4_15_675001	chr4_675001	RAL-40
2988	chrX	295839	295848	chrX	303479	303488	412	4	7640	12.5	5.0	8.8	0.4	7649	chrX	295839	intron	CG3777 +	chrX	299664	intron	CG3777 +	chrX	303488	intron	CG3777 +	chrX_4_295001	chrX_295001	RAL-40
2989	chrX	295858	295879	chrX	303478	303514	412	6	7636	5.0	5.0	5.0	1.0	7656	chrX	295858	intron	CG3777 +	chrX	299686	intron	CG3777 +	chrX	303514	intron	CG3777 +	chrX_6_295001	chrX_295001	RAL-40
2990	chrX	318461	318498	chrX	323557	323604	flea	17	5103	8.5	10.0	9.2	1.7	5143	chrX	318461	intron,intron	CG3777 +,CG32816 -	chrX	321032	intron,intron	CG3777 +,CG32816 -	chrX	323604	intron,intron	CG3777 +,CG32816 -	chrX_17_320001	chrX_320001	RAL-40
2993	chrX	428406	428451	chrX	434611	434656	3S18	14	6205	6.5	6.5	6.5	1.9	6250	chrX	428406	intron	CG32816 -	chrX	431531	intron	CG32816 -	chrX	434656	intron	CG32816 -	chrX_14_430001	chrX_430001	RAL-40
2999	chrX	551427	551453	chrX	558989	559034	412	5	7578	5.5	4.5	5.0	0.8	7607	chrX	551427	intron	Appl +	chrX	555230	intron	Appl +	chrX	559034	intron	Appl +	chrX_5_555001	chrX_555001	RAL-40
3011	chrX	812248	812298	chrX	817897	817947	297	23	5645	4.5	6.5	5.5	3.5	5699	chrX	812248	intron	CG43867 -	chrX	815098	intron	CG43867 -	chrX	817947	intron	CG43867 -	chrX_23_815001	chrX_815001	RAL-40
3013	chrX	827604	827628	chrX	835394	835460	roo	8	7822	7.0	0.0	3.5	1.8	7856	chrX	827604	intron	CG43867 -	chrX	831532	intron	CG43867 -	chrX	835460	intron	CG43867 -	chrX_8_830001	chrX_830001	RAL-40
3015	chrX	906687	906719	chrX	908496	908528	S-element	16	1808	6.5	13.5	10.0	1.5	1841	chrX	906687	intron	CG43867 -	chrX	907608	intron	CG43867 -	chrX	908528	intron	CG43867 -	chrX_16_905001	chrX_905001	RAL-40
3018	chrX	1063738	1063750	chrX	1072551	1072562	roo	8	8813	11.0	6.0	8.5	0.8	8824	chrX	1063738	intron	CR44779 +	chrX	1068150	intron	CR44779 +	chrX	1072562	intron	CR44779 +	chrX_8_1065001	chrX_1065001	RAL-40
3020	chrX	1357760	1357806	chrX	1367950	1367996	Doc	14	10190	8.0	8.5	8.2	1.5	10236	chrX	1357760	intergenic	png -	chrX	1362878	intergenic	not near genes	chrX	1367996	intergenic	not near genes	chrX_14_1360001	chrX_1360001	RAL-40
3021	chrX	1513998	1514009	chrX	1514453	1514454	1360	6	453	0.0	6.0	3.0	1.5	456	chrX	1513998	intron	inc +	chrX	1514226	intron	inc +	chrX	1514454	intron	inc +	chrX_6_1510001	chrX_1510001	RAL-40
3022	chrX	1518027	1518070	chrX	1523442	1523492	jockey	17	5417	3.0	4.0	3.5	3.8	5465	chrX	1518027	intergenic	inc +	chrX	1520760	intergenic	not near genes	chrX	1523492	intergenic	not near genes	chrX_17_1520001	chrX_1520001	RAL-40
3023	chrX	1627964	1627998	chrX	1635452	1635456	gtwin	9	7483	6.0	6.0	6.0	1.3	7492	chrX	1627964	intron,intron	Mur2B -,br +	chrX	1631710	intron,intron	Mur2B -,br +	chrX	1635456	intron,intron	Mur2B -,br +	chrX_9_1630001	chrX_1630001	RAL-40
3026	chrX	1930523	1930569	chrX	1938114	1938160	opus	16	7591	4.0	7.5	5.8	2.4	7637	chrX	1930523	intergenic	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938160	3` UTR	CG3857 -	chrX_16_1930001	chrX_1930001	RAL-40
3027	chrX	1954867	1954916	chrX	1962827	1962844	Stalker2	4	7946	2.0	1.5	1.8	1.4	7977	chrX	1954867	intron	Hr4 +	chrX	1958856	intron	Hr4 +	chrX	1962844	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-40
3030	chrX	2399827	2399852	chrX	2408200	2408214	roo	4	8368	6.5	9.5	8.0	0.4	8387	chrX	2399827	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408214	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-40
3031	chrX	2399853	2399871	chrX	2408191	2408208	roo	9	8358	1.0	8.5	4.8	1.6	8355	chrX	2399853	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408208	intergenic	not near genes	chrX_9_2400001	chrX_2400001	RAL-40
3033	chrX	2664364	2664402	chrX	2665530	2665556	1360	12	1165	5.5	5.0	5.2	1.9	1192	chrX	2664364	intron	sgg +	chrX	2664960	intron	sgg +	chrX	2665556	intron	sgg +	chrX_12_2660001	chrX_2660001	RAL-40
3036	chrX	2844887	2844921	chrX	2852317	2852351	mdg1	11	7430	7.5	7.0	7.2	1.3	7464	chrX	2844887	intron	kirre +	chrX	2848619	intron	kirre +	chrX	2852351	intron	kirre +	chrX_11_2845001	chrX_2845001	RAL-40
3038	chrX	3058004	3058043	chrX	3058265	3058304	pogo	12	260	4.5	6.5	5.5	1.8	300	chrX	3058004	intron	kirre +	chrX	3058154	intron	kirre +	chrX	3058304	intron	kirre +	chrX_12_3055001	chrX_3055001	RAL-40
3039	chrX	3075618	3075665	chrX	3080945	3080991	Transpac	15	5324	4.5	6.5	5.5	2.3	5373	chrX	3075618	intron	kirre +	chrX	3078304	intron	kirre +	chrX	3080991	intron	kirre +	chrX_15_3075001	chrX_3075001	RAL-40
3043	chrX	3218487	3218513	chrX	3227656	3227682	roo	12	9169	4.5	4.0	4.2	2.3	9195	chrX	3218487	intron	dnc +	chrX	3223084	intron	dnc +	chrX	3227682	intron	dnc +	chrX_12_3220001	chrX_3220001	RAL-40
3047	chrX	3415003	3415050	chrX	3421208	3421255	3S18	13	6204	3.0	8.0	5.5	2.0	6252	chrX	3415003	intron,intron	CR44999 +,CG12535 -	chrX	3418129	intron,intron	CR44999 +,CG12535 -	chrX	3421255	intron,intron	CR44999 +,CG12535 -	chrX_13_3415001	chrX_3415001	RAL-40
3048	chrX	3493072	3493074	chrX	3502251	3502253	roo	4	9179	13.0	1.5	7.2	0.5	9181	chrX	3493072	intron,intron	CR44999 +,Gas8 -	chrX	3497662	intron,intron	CR44999 +,Gas8 -	chrX	3502253	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-40
3049	chrX	3493077	3493121	chrX	3502250	3502290	roo	10	9176	7.0	1.5	4.2	1.9	9213	chrX	3493077	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502290	intron,intron	CR44999 +,Gas8 -	chrX_10_3495001	chrX_3495001	RAL-40
3054	chrX	3597531	3597582	chrX	3619719	3619748	roo	16	22185	8.0	2.5	5.2	2.6	22217	chrX	3597531	intron	AstA-R1 +	chrX	3608640	intron	AstA-R1 +	chrX	3619748	intron	AstA-R1 +	chrX_16_3605001	chrX_3605001	RAL-40
3060	chrX	3726751	3726790	chrX	3730168	3730207	NOF	13	3416	3.5	8.0	5.8	1.9	3456	chrX	3726751	intron	tlk +	chrX	3728479	intron	tlk +	chrX	3730207	intron	tlk +	chrX_13_3725001	chrX_3725001	RAL-40
3061	chrX	3752390	3752404	chrX	3764759	3764763	17.6	5	12366	20.5	18.5	19.5	0.2	12373	chrX	3752390	intron	tlk +	chrX	3758576	intron	tlk +	chrX	3764763	intron	tlk +	chrX_5_3755001	chrX_3755001	RAL-40
3062	chrX	3842331	3842351	chrX	3842569	3842589	pogo	10	238	3.0	5.0	4.0	2.0	258	chrX	3842331	intron	ec +	chrX	3842460	intron	ec +	chrX	3842589	intron	ec +	chrX_10_3840001	chrX_3840001	RAL-40
3065	chrX	3986842	3986882	chrX	3994495	3994535	412	20	7652	8.0	0.0	4.0	4.0	7693	chrX	3986842	intergenic	not near genes	chrX	3990688	intergenic	not near genes	chrX	3994535	intergenic	not near genes	chrX_20_3990001	chrX_3990001	RAL-40
3067	chrX	4157879	4157915	chrX	4164951	4164987	297	18	7071	8.0	3.0	5.5	2.8	7108	chrX	4157879	intron	Fas2 -	chrX	4161433	intron	Fas2 -	chrX	4164987	intron	Fas2 -	chrX_18_4160001	chrX_4160001	RAL-40
3076	chrX	4700372	4700424	chrX	4700735	4700773	jockey	15	360	7.0	2.0	4.5	2.7	401	chrX	4700372	3` UTR	ctp +	chrX	4700572	3` UTR	ctp +	chrX	4700773	3` UTR	ctp +	chrX_15_4700001	chrX_4700001	RAL-40
3077	chrX	4731800	4731816	chrX	4736913	4736918	jockey	8	5110	7.5	10.0	8.8	0.8	5118	chrX	4731800	intergenic	not near genes	chrX	4734359	intergenic	not near genes	chrX	4736918	intergenic	not near genes	chrX_8_4730001	chrX_4730001	RAL-40
3079	chrX	4763242	4763277	chrX	4763740	4763785	Stalker4	13	505	5.0	5.0	5.0	2.2	543	chrX	4763242	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763785	intergenic	not near genes	chrX_13_4760001	chrX_4760001	RAL-40
3080	chrX	4792365	4792408	chrX	4792813	4792852	jockey	10	449	4.5	8.5	6.5	1.3	487	chrX	4792365	intergenic	not near genes	chrX	4792608	intergenic	not near genes	chrX	4792852	intergenic	not near genes	chrX_10_4790001	chrX_4790001	RAL-40
3082	chrX	4827961	4827977	chrX	4835339	4835357	Stalker4	6	7382	6.5	3.5	5.0	1.0	7396	chrX	4827961	intergenic	not near genes	chrX	4831659	intergenic	not near genes	chrX	4835357	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-40
3083	chrX	4827987	4827994	chrX	4835338	4835385	Stalker4	6	7382	3.0	3.5	3.2	1.4	7398	chrX	4827987	intergenic	not near genes	chrX	4831686	intergenic	not near genes	chrX	4835385	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-40
3089	chrX	4990023	4990071	chrX	4997257	4997305	roo	24	7233	4.0	6.0	5.0	4.0	7282	chrX	4990023	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997305	intron	CR44833 -	chrX_24_4990001	chrX_4990001	RAL-40
3090	chrX	5096256	5096303	chrX	5103841	5103878	springer	10	7584	3.0	4.5	3.8	2.1	7622	chrX	5096256	intron,intron	CG15465 +,rg +	chrX	5100067	intron,intron	CG15465 +,rg +	chrX	5103878	intron,intron	CG15465 +,rg +	chrX_10_5100001	chrX_5100001	RAL-40
3094	chrX	5338699	5338726	chrX	5339972	5339974	jockey	7	1267	5.5	6.0	5.8	1.0	1275	chrX	5338699	intergenic	not near genes	chrX	5339336	intergenic	not near genes	chrX	5339974	intergenic	SK +	chrX_7_5335001	chrX_5335001	RAL-40
3098	chrX	5524820	5524859	chrX	5528703	5528742	412	9	3883	3.5	2.0	2.8	2.4	3922	chrX	5524820	intergenic	snoRNA:Psi28S-3342 -	chrX	5526781	intergenic	not near genes	chrX	5528742	intergenic	Vsx2 -	chrX_9_5525001	chrX_5525001	RAL-40
3101	chrX	5883788	5883841	chrX	5884049	5884102	pogo	13	260	2.5	5.5	4.0	2.6	314	chrX	5883788	intron	CR45668 -	chrX	5883945	intron	CR45668 -	chrX	5884102	intron	CR45668 -	chrX_13_5880001	chrX_5880001	RAL-40
3102	chrX	5884145	5884185	chrX	5884406	5884446	pogo	11	260	7.5	0.5	4.0	2.2	301	chrX	5884145	intron	CR45668 -	chrX	5884296	intron	CR45668 -	chrX	5884446	intron	CR45668 -	chrX_11_5880001	chrX_5880001	RAL-40
3105	chrX	6171578	6171592	chrX	6179031	6179045	Quasimodo	6	7453	6.0	5.0	5.5	0.9	7467	chrX	6171578	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179045	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-40
3106	chrX	6171594	6171613	chrX	6179019	6179054	Quasimodo	4	7440	4.0	4.5	4.2	0.8	7460	chrX	6171594	intron	Ca-alpha1T -	chrX	6175324	intron	Ca-alpha1T -	chrX	6179054	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-40
3110	chrX	6335216	6335243	chrX	6337731	6337773	Tirant	9	2525	0.0	5.5	2.8	2.4	2557	chrX	6335216	intergenic	not near genes	chrX	6336494	intergenic	not near genes	chrX	6337773	5` UTR	CG3842 +	chrX_9_6335001	chrX_6335001	RAL-40
3111	chrX	6392854	6392895	chrX	6397633	6397680	Doc	11	4782	4.0	7.0	5.5	1.7	4826	chrX	6392854	intergenic	not near genes	chrX	6395267	intergenic	not near genes	chrX	6397680	intergenic	not near genes	chrX_11_6395001	chrX_6395001	RAL-40
3112	chrX	6445327	6445336	chrX	6451102	6451114	297	5	5777	3.0	14.5	8.8	0.5	5787	chrX	6445327	intron	CG42340 -	chrX	6448220	intron	CG42340 -	chrX	6451114	intron	CG42340 -	chrX_5_6445001	chrX_6445001	RAL-40
3114	chrX	6562824	6562851	chrX	6571304	6571343	Tirant	5	8495	6.5	3.5	5.0	0.8	8519	chrX	6562824	intron	CG34417 +	chrX	6567084	intron	CG34417 +	chrX	6571343	intron	CG34417 +	chrX_5_6565001	chrX_6565001	RAL-40
3115	chrX	6605465	6605509	chrX	6608507	6608551	Burdock	20	3042	2.5	9.5	6.0	2.9	3086	chrX	6605465	intron	pigs +	chrX	6607008	intron	pigs +	chrX	6608551	intron	pigs +	chrX_20_6605001	chrX_6605001	RAL-40
3128	chrX	7023582	7023634	chrX	7030992	7031044	Tabor	23	7406	7.5	7.5	7.5	2.7	7462	chrX	7023582	intron	CG12541 -	chrX	7027313	intron	CG12541 -	chrX	7031044	intron	CG12541 -	chrX_23_7025001	chrX_7025001	RAL-40
3130	chrX	7125230	7125267	chrX	7134403	7134446	roo	8	9177	1.0	4.0	2.5	2.3	9216	chrX	7125230	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134446	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-40
3135	chrX	7702887	7702927	chrX	7703346	7703380	jockey	16	459	8.0	8.0	8.0	1.8	493	chrX	7702887	intron	CHES-1-like -	chrX	7703134	intron	CHES-1-like -	chrX	7703380	intron	CHES-1-like -	chrX_16_7700001	chrX_7700001	RAL-40
3139	chrX	7845712	7845758	chrX	7847223	7847269	hopper2	15	1508	4.5	6.5	5.5	2.3	1557	chrX	7845712	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847269	intergenic	not near genes	chrX_15_7845001	chrX_7845001	RAL-40
3143	chrX	8031406	8031449	chrX	8035735	8035778	Juan	10	4329	7.0	6.0	6.5	1.3	4372	chrX	8031406	intergenic	not near genes	chrX	8033592	intergenic	not near genes	chrX	8035778	3` UTR	CG2233 -	chrX_10_8030001	chrX_8030001	RAL-40
3144	chrX	8364841	8364876	chrX	8365252	8365293	BS	21	416	5.0	7.0	6.0	3.0	452	chrX	8364841	intron	nAChRalpha3 -	chrX	8365067	intron	nAChRalpha3 -	chrX	8365293	intron	nAChRalpha3 -	chrX_21_8365001	chrX_8365001	RAL-40
3152	chrX	8922322	8922363	chrX	8922763	8922812	jockey	17	448	3.0	7.0	5.0	2.8	490	chrX	8922322	intron	rdgA +	chrX	8922567	intron	rdgA +	chrX	8922812	intron	rdgA +	chrX_17_8920001	chrX_8920001	RAL-40
3154	chrX	8948742	8948790	chrX	8956272	8956320	roo	17	7530	4.5	6.5	5.5	2.6	7578	chrX	8948742	intron	rdgA +	chrX	8952531	intron	rdgA +	chrX	8956320	intron	rdgA +	chrX_17_8950001	chrX_8950001	RAL-40
3160	chrX	9508121	9508157	chrX	9509659	9509690	jockey	9	1537	6.0	2.0	4.0	1.8	1569	chrX	9508121	intron	CG32700 -	chrX	9508906	intron	CG32700 -	chrX	9509690	intron	CG32700 -	chrX_9_9505001	chrX_9505001	RAL-40
3162	chrX	9575794	9575821	chrX	9576113	9576164	mdg3	15	339	2.0	4.0	3.0	3.8	370	chrX	9575794	intron,exon	CG32699 -,CG42395 -	chrX	9575979	intron,intron	CG32699 -,CG42395 -	chrX	9576164	intron,5` UTR	CG32699 -,CG42395 -	chrX_15_9575001	chrX_9575001	RAL-40
3165	chrX	10138199	10138246	chrX	10145719	10145770	412	20	7523	5.5	4.0	4.8	3.4	7571	chrX	10138199	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145770	intron,intron	RhoU +,CR44894 -	chrX_20_10140001	chrX_10140001	RAL-40
3167	chrX	10267307	10267332	chrX	10276477	10276502	roo	12	9169	1.5	5.5	3.5	2.7	9195	chrX	10267307	3` UTR	alpha-Man-I -	chrX	10271904	intron	alpha-Man-I -	chrX	10276502	3` UTR	alpha-Man-I -	chrX_12_10270001	chrX_10270001	RAL-40
3170	chrX	10348780	10348826	chrX	10356365	10356390	springer	12	7580	5.5	3.5	4.5	2.2	7610	chrX	10348780	intergenic	snoRNA:U3:9B +	chrX	10352585	intergenic	not near genes	chrX	10356390	intergenic	l(1)G0289 -	chrX_12_10350001	chrX_10350001	RAL-40
3174	chrX	10550844	10550883	chrX	10552331	10552370	hobo	10	1486	4.5	4.5	4.5	1.8	1526	chrX	10550844	intron	spri -	chrX	10551607	intron	spri -	chrX	10552370	intron	spri -	chrX_10_10550001	chrX_10550001	RAL-40
3177	chrX	10686033	10686082	chrX	10691190	10691239	roo	21	5157	6.0	8.0	7.0	2.6	5206	chrX	10686033	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691239	intron	X11Lbeta +	chrX_21_10685001	chrX_10685001	RAL-40
3182	chrX	11096003	11096029	chrX	11103125	11103151	HMS-Beagle	14	7122	7.0	7.5	7.2	1.7	7148	chrX	11096003	intergenic	not near genes	chrX	11099577	intergenic	not near genes	chrX	11103151	intron	CG42249 +	chrX_14_11095001	chrX_11095001	RAL-40
3183	chrX	11184250	11184279	chrX	11189339	11189375	flea	4	5096	4.5	8.0	6.2	0.6	5125	chrX	11184250	intergenic	not near genes	chrX	11186812	intergenic	not near genes	chrX	11189375	intergenic	not near genes	chrX_4_11185001	chrX_11185001	RAL-40
3184	chrX	11194455	11194459	chrX	11201886	11201886	gypsy5	4	7434	2.5	5.5	4.0	0.8	7431	chrX	11194455	intergenic	not near genes	chrX	11198170	intergenic	not near genes	chrX	11201886	intergenic	CG11106 +	chrX_4_11195001	chrX_11195001	RAL-40
3186	chrX	11312052	11312053	chrX	11319419	11319426	Stalker2	4	7370	9.0	6.0	7.5	0.5	7374	chrX	11312052	intergenic	not near genes	chrX	11315739	intergenic	not near genes	chrX	11319426	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-40
3187	chrX	11312058	11312092	chrX	11319414	11319426	Stalker2	10	7356	2.0	4.5	3.2	2.4	7368	chrX	11312058	intergenic	not near genes	chrX	11315742	intergenic	not near genes	chrX	11319426	intergenic	not near genes	chrX_10_11315001	chrX_11315001	RAL-40
3190	chrX	11535032	11535038	chrX	11541522	11541528	Burdock	6	6490	9.5	7.0	8.2	0.7	6496	chrX	11535032	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541528	intron	Drak +	chrX_6_11535001	chrX_11535001	RAL-40
3191	chrX	11633397	11633446	chrX	11640471	11640520	297	24	7073	5.0	6.5	5.8	3.5	7123	chrX	11633397	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640520	intron	Ptp10D +	chrX_24_11635001	chrX_11635001	RAL-40
3192	chrX	11645096	11645144	chrX	11648285	11648299	NOF	6	3183	3.5	6.5	5.0	1.0	3203	chrX	11645096	intron	Ptp10D +	chrX	11646698	intron	Ptp10D +	chrX	11648299	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	RAL-40
3198	chrX	12168119	12168138	chrX	12173581	12173600	I-element	8	5461	6.5	3.5	5.0	1.3	5481	chrX	12168119	intron	Ten-a +	chrX	12170860	intron	Ten-a +	chrX	12173600	intron	Ten-a +	chrX_8_12170001	chrX_12170001	RAL-40
3202	chrX	12381902	12381902	chrX	12385794	12385824	flea	4	3909	1.5	5.5	3.5	0.9	3922	chrX	12381902	intergenic	not near genes	chrX	12383863	intergenic	not near genes	chrX	12385824	intergenic	not near genes	chrX_4_12380001	chrX_12380001	RAL-40
3209	chrX	12930579	12930607	chrX	12937715	12937743	HMS-Beagle	10	7135	8.5	5.5	7.0	1.2	7164	chrX	12930579	intron	fne +	chrX	12934161	intron	fne +	chrX	12937743	intron	fne +	chrX_10_12930001	chrX_12930001	RAL-40
3218	chrX	13401464	13401514	chrX	13401836	13401886	jockey	14	372	3.0	3.0	3.0	3.5	422	chrX	13401464	intergenic	CG1673 +,CG12725 -	chrX	13401675	intergenic	CG12725 -,CG1673 +	chrX	13401886	3` UTR	CG12725 -	chrX_14_13400001	chrX_13400001	RAL-40
3219	chrX	13429473	13429490	chrX	13430642	13430659	jockey	7	1168	0.0	14.0	7.0	0.9	1186	chrX	13429473	intergenic	not near genes	chrX	13430066	intergenic	not near genes	chrX	13430659	intergenic	not near genes	chrX_7_13430001	chrX_13430001	RAL-40
3222	chrX	13463632	13463678	chrX	13469229	13469253	mdg3	18	5590	3.5	10.0	6.8	2.3	5621	chrX	13463632	intron	Neto +	chrX	13466442	intron	Neto +	chrX	13469253	intron	Neto +	chrX_18_13465001	chrX_13465001	RAL-40
3231	chrX	13937965	13938000	chrX	13941246	13941291	I-element	9	3289	3.5	2.0	2.8	2.4	3326	chrX	13937965	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941291	intron	mamo -	chrX_9_13935001	chrX_13935001	RAL-40
3235	chrX	14105021	14105034	chrX	14114186	14114205	roo	8	9169	7.5	3.0	5.2	1.3	9184	chrX	14105021	intergenic	not near genes	chrX	14109613	intergenic	not near genes	chrX	14114205	5` UTR	CR44657 +	chrX_8_14105001	chrX_14105001	RAL-40
3236	chrX	14105036	14105055	chrX	14114176	14114200	roo	10	9154	4.5	2.5	3.5	2.2	9164	chrX	14105036	intergenic	not near genes	chrX	14109618	intergenic	not near genes	chrX	14114200	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	RAL-40
3238	chrX	14157576	14157599	chrX	14163253	14163276	297	11	5677	11.0	9.0	10.0	1.0	5700	chrX	14157576	intergenic	not near genes	chrX	14160426	intergenic	not near genes	chrX	14163276	intergenic	not near genes	chrX_11_14160001	chrX_14160001	RAL-40
3243	chrX	14416288	14416336	chrX	14421076	14421123	F-element	10	4788	2.0	8.5	5.2	1.6	4835	chrX	14416288	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421123	intron	dpr8 +	chrX_10_14415001	chrX_14415001	RAL-40
3247	chrX	14636457	14636496	chrX	14641903	14641907	I-element	17	5453	4.5	4.5	4.5	3.1	5450	chrX	14636457	intron	NetA -	chrX	14639182	intron	NetA -	chrX	14641907	intron	NetA -	chrX_17_14635001	chrX_14635001	RAL-40
3250	chrX	14778015	14778055	chrX	14782832	14782862	Doc	23	4816	9.0	8.5	8.8	2.3	4847	chrX	14778015	intergenic	CG5347 +	chrX	14780438	intergenic	not near genes	chrX	14782862	intergenic	Ag5r2 -	chrX_23_14780001	chrX_14780001	RAL-40
3252	chrX	14818771	14818794	chrX	14823967	14824018	copia	7	5214	3.5	7.0	5.2	1.1	5247	chrX	14818771	intron	rut -	chrX	14821394	intron	rut -	chrX	14824018	intron	rut -	chrX_7_14820001	chrX_14820001	RAL-40
3253	chrX	14936849	14936890	chrX	14946117	14946167	roo	19	9276	6.5	8.5	7.5	2.2	9318	chrX	14936849	intron	pdgy -	chrX	14941508	intron	pdgy -	chrX	14946167	intron	pdgy -	chrX_19_14940001	chrX_14940001	RAL-40
3261	chrX	15273709	15273736	chrX	15274868	15274896	1360	7	1163	3.5	3.0	3.2	1.7	1187	chrX	15273709	intergenic	not near genes	chrX	15274302	intergenic	not near genes	chrX	15274896	intergenic	not near genes	chrX_7_15270001	chrX_15270001	RAL-40
3262	chrX	15326713	15326718	chrX	15326931	15326936	I-element	4	218	1.5	6.0	3.8	0.8	223	chrX	15326713	3` UTR	Top1 +	chrX	15326824	3` UTR	Top1 +	chrX	15326936	3` UTR	Top1 +	chrX_4_15325001	chrX_15325001	RAL-40
3265	chrX	15413064	15413081	chrX	15417346	15417403	Juan	6	4315	4.5	1.5	3.0	1.5	4339	chrX	15413064	intron	Cngl -	chrX	15415234	intron	Cngl -	chrX	15417403	intron	Cngl -	chrX_6_15415001	chrX_15415001	RAL-40
3266	chrX	15421901	15421948	chrX	15423432	15423469	pogo	9	1530	6.0	5.5	5.8	1.3	1568	chrX	15421901	intron	Cngl -	chrX	15422685	intron	Cngl -	chrX	15423469	intron	Cngl -	chrX_9_15420001	chrX_15420001	RAL-40
3267	chrX	15435689	15435701	chrX	15436142	15436154	rover	7	453	0.5	14.5	7.5	0.8	465	chrX	15435689	intron	Cngl -	chrX	15435922	intron	Cngl -	chrX	15436154	intron	Cngl -	chrX_7_15435001	chrX_15435001	RAL-40
3280	chrX	16222762	16222809	chrX	16231132	16231179	roo	29	8369	5.5	7.5	6.5	3.9	8417	chrX	16222762	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231179	intergenic	not near genes	chrX_29_16225001	chrX_16225001	RAL-40
3282	chrX	16245932	16245962	chrX	16246059	16246089	INE-1	17	126	11.0	3.5	7.2	2.1	157	chrX	16245932	intergenic	not near genes	chrX	16246010	intergenic	not near genes	chrX	16246089	intergenic	not near genes	chrX_17_16245001	chrX_16245001	RAL-40
3285	chrX	16340648	16340696	chrX	16349823	16349873	roo	8	9176	0.0	4.5	2.2	2.5	9225	chrX	16340648	intergenic	Dsp1 +	chrX	16345260	intergenic	not near genes	chrX	16349873	intergenic	sl +	chrX_8_16345001	chrX_16345001	RAL-40
3286	chrX	16492625	16492675	chrX	16498222	16498272	mdg3	26	5597	5.5	4.5	5.0	4.3	5647	chrX	16492625	intron	para -	chrX	16495448	intron	para -	chrX	16498272	exon	para -	chrX_26_16495001	chrX_16495001	RAL-40
3296	chrX	16936005	16936031	chrX	16936443	16936469	jockey	6	438	0.0	7.5	3.8	1.2	464	chrX	16936005	intron	CG4928 +	chrX	16936237	intron	CG4928 +	chrX	16936469	intron	CG4928 +	chrX_6_16935001	chrX_16935001	RAL-40
3300	chrX	17057919	17057950	chrX	17058180	17058211	pogo	5	261	7.0	5.5	6.2	0.7	292	chrX	17057919	intron	CG45002 -	chrX	17058065	intron	CG45002 -	chrX	17058211	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-40
3321	chrX	17792938	17792977	chrX	17796256	17796295	flea	6	3315	4.5	7.0	5.8	0.9	3357	chrX	17792938	intron	OdsH +	chrX	17794616	intron	OdsH +	chrX	17796295	intron	OdsH +	chrX_6_17790001	chrX_17790001	RAL-40
3330	chrX	18429511	18429526	chrX	18434841	18434848	Transpac	11	5329	1.5	11.5	6.5	1.5	5337	chrX	18429511	intergenic	not near genes	chrX	18432180	intergenic	not near genes	chrX	18434848	intergenic	not near genes	chrX_11_18430001	chrX_18430001	RAL-40
3340	chrX	18957060	18957077	chrX	18965743	18965760	roo	8	8683	8.0	4.0	6.0	1.1	8700	chrX	18957060	intron	CG43759 +	chrX	18961410	intron	CG43759 +	chrX	18965760	intron	CG43759 +	chrX_8_18960001	chrX_18960001	RAL-40
3341	chrX	18957078	18957096	chrX	18965741	18965774	roo	9	8680	5.0	4.0	4.5	1.6	8696	chrX	18957078	intron	CG43759 +	chrX	18961426	intron	CG43759 +	chrX	18965774	intron	CG43759 +	chrX_9_18960001	chrX_18960001	RAL-40
3342	chrX	19060393	19060437	chrX	19065197	19065241	Doc	15	4804	6.0	8.0	7.0	1.9	4848	chrX	19060393	intron	CG14190 +	chrX	19062817	intron	CG14190 +	chrX	19065241	intron	CG14190 +	chrX_15_19060001	chrX_19060001	RAL-40
3349	chrX	19136537	19136584	chrX	19143472	19143519	412	15	6935	5.0	1.5	3.2	3.6	6982	chrX	19136537	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143519	3` UTR	RhoGAP18B -	chrX_15_19140001	chrX_19140001	RAL-40
3354	chrX	19356970	19357023	chrX	19358431	19358502	NOF	17	1464	4.5	2.0	3.2	4.0	1532	chrX	19356970	intron	kek5 +	chrX	19357736	intron	kek5 +	chrX	19358502	intron	kek5 +	chrX_17_19355001	chrX_19355001	RAL-40
3356	chrX	19380142	19380183	chrX	19380401	19380444	pogo	14	260	9.5	7.0	8.2	1.5	302	chrX	19380142	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380444	intron	kek5 +	chrX_14_19380001	chrX_19380001	RAL-40
3359	chrX	19472120	19472154	chrX	19472695	19472732	jockey	13	584	6.0	6.5	6.2	1.8	612	chrX	19472120	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472732	intergenic	not near genes	chrX_13_19470001	chrX_19470001	RAL-40
3367	chrX	19710055	19710094	chrX	19711861	19711874	S-element	18	1799	4.0	9.0	6.5	2.4	1819	chrX	19710055	intron	meso18E -	chrX	19710964	intron	meso18E -	chrX	19711874	intron	meso18E -	chrX_18_19710001	chrX_19710001	RAL-40
3387	chrX	20377326	20377340	chrX	20378798	20378827	hobo	5	1481	4.0	7.5	5.8	0.7	1501	chrX	20377326	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378827	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-40
3403	chrX	20836719	20836754	chrX	20844333	20844376	roo	10	7620	6.0	5.0	5.5	1.5	7657	chrX	20836719	intron	shakB -	chrX	20840548	intron	shakB -	chrX	20844376	intron	shakB -	chrX_10_20840001	chrX_20840001	RAL-40
3405	chrX	20940705	20940751	chrX	20942194	20942232	hobo	13	1486	6.0	6.0	6.0	1.9	1527	chrX	20940705	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942232	intergenic	not near genes	chrX_13_20940001	chrX_20940001	RAL-40
3412	chrX	21061857	21061895	chrX	21062351	21062400	roo	11	501	2.0	5.0	3.5	2.4	543	chrX	21061857	intron	bves +	chrX	21062128	intron	bves +	chrX	21062400	intron,3` UTR	bves +,CG32512 -	chrX_11_21060001	chrX_21060001	RAL-40
3414	chrX	21086116	21086161	chrX	21087165	21087210	jockey	15	1047	5.0	7.5	6.2	2.1	1094	chrX	21086116	intergenic	not near genes	chrX	21086663	intergenic	not near genes	chrX	21087210	intergenic	not near genes	chrX_15_21085001	chrX_21085001	RAL-40
3427	chrX	21458670	21458727	chrX	21464126	21464183	Ivk	28	5455	9.0	2.5	5.8	4.1	5513	chrX	21458670	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464183	intergenic	not near genes	chrX_28_21460001	chrX_21460001	RAL-40
3429	chrX	21474394	21474432	chrX	21474779	21474818	1731	14	386	3.5	7.0	5.2	2.3	424	chrX	21474394	intergenic	not near genes	chrX	21474606	intergenic	not near genes	chrX	21474818	intergenic	not near genes	chrX_14_21470001	chrX_21470001	RAL-40
3435	chrX	21595571	21595575	chrX	21598645	21598649	micropia	4	3074	13.0	18.5	15.8	0.2	3078	chrX	21595571	intergenic	not near genes	chrX	21597110	intergenic	not near genes	chrX	21598649	intergenic	not near genes	chrX_4_21595001	chrX_21595001	RAL-40
3440	chrX	22522618	22522658	chrX	22525458	22525483	NOF	15	2837	6.5	0.5	3.5	3.3	2865	chrX	22522618	intron	CG17600 +	chrX	22524050	intron	CG17600 +	chrX	22525483	intron	CG17600 +	chrX_15_22520001	chrX_22520001	RAL-40
3447	chrX	22697479	22697516	chrX	22701792	22701833	Juan	17	4317	9.5	9.5	9.5	1.6	4354	chrX	22697479	intron	CR44997 +	chrX	22699656	intron	CR44997 +	chrX	22701833	intron	CR44997 +	chrX_17_22695001	chrX_22695001	RAL-40
3449	chrX	22771490	22771536	chrX	22774801	22774834	297	10	3306	5.0	3.5	4.2	1.9	3344	chrX	22771490	intron	CR44997 +	chrX	22773162	intron	CR44997 +	chrX	22774834	intron	CR44997 +	chrX_10_22770001	chrX_22770001	RAL-40
3458	chrX	22967370	22967384	chrX	23154541	23154555	diver	7	187171	5.0	18.5	11.8	0.5	187185	chrX	22967370	intergenic	not near genes	chrX	23060962	intergenic	not near genes	chrX	23154555	intergenic	not near genes	chrX_7_23060001	chrX_23060001	RAL-40
3459	chrX	22987084	22987135	chrX	22989763	22989789	Burdock	9	2674	5.0	5.0	5.0	1.5	2705	chrX	22987084	intron,intron	stnA -,stnB -	chrX	22988436	intron,intron	stnA -,stnB -	chrX	22989789	intron,intron	stnA -,stnB -	chrX_9_22985001	chrX_22985001	RAL-40
3461	chrX	22996296	22996338	chrX	23003548	23003590	roo	18	7249	9.5	4.0	6.8	2.3	7294	chrX	22996296	intron,intron	stnA -,stnB -	chrX	22999943	intron,intron	stnA -,stnB -	chrX	23003590	intron,intron	stnA -,stnB -	chrX_18_22995001	chrX_22995001	RAL-40
3462	chrX	23036369	23036412	chrX	23037790	23037833	pogo	14	1421	5.5	10.5	8.0	1.6	1464	chrX	23036369	intron	CG12061 +	chrX	23037101	intron	CG12061 +	chrX	23037833	intron	CG12061 +	chrX_14_23035001	chrX_23035001	RAL-40