SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47490 chr2L 52563 52592 jockey 12 5110 3.0 5.5 4.2 2.3 5131 chr2L 47461 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_12_50001 chr2L_50001 RAL-409_95b 2 chr2L 263308 263318 chr2L 263453 263463 4 150 1.5 1.5 1.5 1.6 155 chr2L 263308 intron,3` UTR CG3645 -,CG17075 - chr2L 263386 intron,3` UTR CG3645 -,CG17075 - chr2L 263463 intron,3` UTR CG3645 -,CG17075 - chr2L_4_260001 chr2L_260001 RAL-409_95b 3 chr2L 347888 347919 chr2L 355386 355421 blood 8 7505 3.5 1.0 2.2 2.5 7533 chr2L 347888 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355421 3` UTR Plc21C + chr2L_8_350001 chr2L_350001 RAL-409_95b 4 chr2L 459405 459428 chr2L 459480 459509 7 74 5.0 3.5 4.2 1.3 104 chr2L 459405 3` UTR CG4297 - chr2L 459457 3` UTR CG4297 - chr2L 459509 3` UTR CG4297 - chr2L_7_455001 chr2L_455001 RAL-409_95b 5 chr2L 590606 590642 chr2L 590721 590761 10 109 4.0 2.5 3.2 2.4 155 chr2L 590606 intron Gsc - chr2L 590684 intron Gsc - chr2L 590761 intron Gsc - chr2L_10_590001 chr2L_590001 RAL-409_95b 6 chr2L 635246 635261 chr2L 635657 635671 7 419 1.0 2.5 1.8 2.5 425 chr2L 635246 intergenic not near genes chr2L 635458 intergenic not near genes chr2L 635671 intergenic not near genes chr2L_7_635001 chr2L_635001 RAL-409_95b 7 chr2L 666283 666306 chr2L 666358 666384 10 79 3.5 0.5 2.0 3.3 101 chr2L 666283 intron ds - chr2L 666334 intron ds - chr2L 666384 intron ds - chr2L_10_665001 chr2L_665001 RAL-409_95b 8 chr2L 686923 686950 chr2L 695960 695993 roo 4 9045 2.0 2.0 2.0 1.3 9070 chr2L 686923 intron ds - chr2L 691458 intron ds - chr2L 695993 intron ds - chr2L_4_690001 chr2L_690001 RAL-409_95b 9 chr2L 763596 763629 chr2L 763672 763690 4 82 1.0 0.5 0.8 2.2 94 chr2L 763596 intergenic not near genes chr2L 763643 intergenic not near genes chr2L 763690 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-409_95b 10 chr2L 877844 877878 chr2L 877923 877937 8 76 1.0 2.0 1.5 3.2 93 chr2L 877844 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877937 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-409_95b 11 chr2L 892420 892431 chr2L 892528 892538 5 110 2.5 4.0 3.2 1.2 118 chr2L 892420 intergenic not near genes chr2L 892479 intergenic not near genes chr2L 892538 intergenic not near genes chr2L_5_890001 chr2L_890001 RAL-409_95b 12 chr2L 931635 931671 chr2L 931712 931735 14 82 1.0 0.5 0.8 7.8 100 chr2L 931635 intron CG4341 + chr2L 931685 intron CG4341 + chr2L 931735 intron CG4341 + chr2L_14_930001 chr2L_930001 RAL-409_95b 13 chr2L 953480 953520 chr2L 953578 953592 4 90 7.5 2.5 5.0 0.7 112 chr2L 953480 exon CG4341 + chr2L 953536 intron CG4341 + chr2L 953592 intron CG4341 + chr2L_4_950001 chr2L_950001 RAL-409_95b 14 chr2L 964541 964567 chr2L 964640 964668 6 98 4.5 2.5 3.5 1.3 127 chr2L 964541 intergenic not near genes chr2L 964604 intergenic not near genes chr2L 964668 intergenic not near genes chr2L_6_960001 chr2L_960001 RAL-409_95b 15 chr2L 976757 976775 chr2L 976833 976872 4 87 1.0 2.5 1.8 1.4 115 chr2L 976757 intergenic not near genes chr2L 976814 intergenic not near genes chr2L 976872 intergenic not near genes chr2L_4_975001 chr2L_975001 RAL-409_95b 16 chr2L 1019449 1019484 chr2L 1019533 1019582 12 88 6.0 4.5 5.2 1.9 133 chr2L 1019449 intron IA-2 - chr2L 1019516 intron IA-2 - chr2L 1019582 intron IA-2 - chr2L_12_1015001 chr2L_1015001 RAL-409_95b 17 chr2L 1028850 1028872 chr2L 1028947 1028953 5 89 1.5 2.0 1.8 1.8 103 chr2L 1028850 intron IA-2 - chr2L 1028902 intron IA-2 - chr2L 1028953 intron IA-2 - chr2L_5_1025001 chr2L_1025001 RAL-409_95b 18 chr2L 1156843 1156874 chr2L 1156964 1156971 4 115 5.0 5.5 5.2 0.6 128 chr2L 1156843 intron capt - chr2L 1156907 intron capt - chr2L 1156971 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-409_95b 19 chr2L 1220119 1220162 chr2L 1227596 1227623 blood 10 7474 1.0 0.5 0.8 5.6 7504 chr2L 1220119 intron CG42329 + chr2L 1223871 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-409_95b 20 chr2L 1261135 1261140 chr2L 1261215 1261242 4 88 0.0 0.0 0.0 4.0 107 chr2L 1261135 intron robo3 + chr2L 1261188 intron robo3 + chr2L 1261242 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-409_95b 21 chr2L 1322026 1322033 chr2L 1322112 1322126 4 90 4.0 0.0 2.0 1.3 100 chr2L 1322026 intergenic not near genes chr2L 1322076 intergenic not near genes chr2L 1322126 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-409_95b 22 chr2L 1590980 1590985 chr2L 1591050 1591057 4 73 5.5 3.0 4.2 0.8 77 chr2L 1590980 intron haf + chr2L 1591018 intron haf + chr2L 1591057 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-409_95b 23 chr2L 1635402 1635427 chr2L 1635562 1635569 5 148 0.0 3.0 1.5 2.0 167 chr2L 1635402 intergenic not near genes chr2L 1635486 intergenic not near genes chr2L 1635569 intergenic not near genes chr2L_5_1635001 chr2L_1635001 RAL-409_95b 24 chr2L 1678968 1679008 chr2L 1686449 1686461 blood 6 7474 2.5 4.0 3.2 1.4 7493 chr2L 1678968 intron chinmo + chr2L 1682714 intron chinmo + chr2L 1686461 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-409_95b 25 chr2L 1711347 1711386 chr2L 1711678 1711710 mdg3 11 325 1.5 1.5 1.5 4.4 363 chr2L 1711347 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711710 3` UTR frtz - chr2L_11_1710001 chr2L_1710001 RAL-409_95b 26 chr2L 1721836 1721848 chr2L 1721922 1721931 4 82 0.5 3.0 1.8 1.4 95 chr2L 1721836 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721931 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-409_95b 27 chr2L 1724808 1724838 chr2L 1724885 1724922 9 87 2.0 2.0 2.0 3.0 114 chr2L 1724808 3` UTR Eno - chr2L 1724865 3` UTR Eno - chr2L 1724922 3` UTR Eno - chr2L_9_1720001 chr2L_1720001 RAL-409_95b 28 chr2L 1879563 1879574 chr2L 1879720 1879737 4 162 1.5 4.0 2.8 1.1 174 chr2L 1879563 intron CG31663 - chr2L 1879650 intron CG31663 - chr2L 1879737 intron CG31663 - chr2L_4_1875001 chr2L_1875001 RAL-409_95b 29 chr2L 2007854 2007868 chr2L 2007975 2007996 4 126 0.0 3.5 1.8 1.4 142 chr2L 2007854 intergenic CR45712 + chr2L 2007925 intergenic CR45712 +,Nplp4 + chr2L 2007996 intergenic CR45712 +,Nplp4 + chr2L_4_2005001 chr2L_2005001 RAL-409_95b 30 chr2L 2022720 2022751 chr2L 2022794 2022827 7 80 2.0 3.0 2.5 2.0 107 chr2L 2022720 intron CG4238 + chr2L 2022774 intron CG4238 + chr2L 2022827 intron CG4238 + chr2L_7_2020001 chr2L_2020001 RAL-409_95b 31 chr2L 2100384 2100401 chr2L 2109524 2109545 roo 5 9149 8.0 2.5 5.2 0.8 9161 chr2L 2100384 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109545 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-409_95b 32 chr2L 2112129 2112142 chr2L 2119773 2119778 opus 6 7642 1.5 1.0 1.2 2.7 7649 chr2L 2112129 intergenic not near genes chr2L 2115954 intergenic not near genes chr2L 2119778 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-409_95b 33 chr2L 2256468 2256478 chr2L 2256554 2256559 4 85 4.0 1.0 2.5 1.1 91 chr2L 2256468 intergenic not near genes chr2L 2256514 intergenic not near genes chr2L 2256559 intergenic not near genes chr2L_4_2255001 chr2L_2255001 RAL-409_95b 34 chr2L 2260786 2260822 chr2L 2260892 2260928 5 103 3.0 3.5 3.2 1.2 142 chr2L 2260786 intergenic not near genes chr2L 2260857 intergenic not near genes chr2L 2260928 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-409_95b 35 chr2L 2303502 2303524 chr2L 2303587 2303594 5 82 4.0 0.5 2.2 1.6 92 chr2L 2303502 intergenic not near genes chr2L 2303548 intergenic not near genes chr2L 2303594 intergenic not near genes chr2L_5_2300001 chr2L_2300001 RAL-409_95b 36 chr2L 2480978 2481016 chr2L 2481165 2481201 8 180 3.5 2.0 2.8 2.1 223 chr2L 2480978 intergenic not near genes chr2L 2481090 intergenic not near genes chr2L 2481201 intergenic not near genes chr2L_8_2480001 chr2L_2480001 RAL-409_95b 37 chr2L 2618034 2618066 chr2L 2618117 2618144 6 92 1.5 3.0 2.2 1.9 110 chr2L 2618034 intergenic not near genes chr2L 2618089 intergenic not near genes chr2L 2618144 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-409_95b 38 chr2L 2632468 2632496 chr2L 2632561 2632564 4 78 3.0 2.5 2.8 1.1 96 chr2L 2632468 intergenic not near genes chr2L 2632516 intergenic not near genes chr2L 2632564 intergenic not near genes chr2L_4_2630001 chr2L_2630001 RAL-409_95b 39 chr2L 2698864 2698891 chr2L 2698952 2698989 9 93 0.0 1.5 0.8 5.0 125 chr2L 2698864 intron CG31690 + chr2L 2698926 intron CG31690 + chr2L 2698989 intron CG31690 + chr2L_9_2695001 chr2L_2695001 RAL-409_95b 40 chr2L 2724427 2724439 chr2L 2724502 2724535 4 91 1.0 2.0 1.5 1.6 108 chr2L 2724427 intergenic not near genes chr2L 2724481 intergenic not near genes chr2L 2724535 intergenic not near genes chr2L_4_2720001 chr2L_2720001 RAL-409_95b 41 chr2L 2933306 2933322 chr2L 2935478 2935510 pogo 6 2182 0.5 4.0 2.2 1.9 2204 chr2L 2933306 intron lilli + chr2L 2934408 intron lilli + chr2L 2935510 intron lilli + chr2L_6_2930001 chr2L_2930001 RAL-409_95b 42 chr2L 3073020 3073062 chr2L 3078234 3078263 copia 6 5213 5.0 2.0 3.5 1.3 5243 chr2L 3073020 intron toc - chr2L 3075642 intron toc - chr2L 3078263 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-409_95b 43 chr2L 3186121 3186134 chr2L 3186398 3186407 4 275 1.5 2.0 1.8 1.4 286 chr2L 3186121 intron CG34393 - chr2L 3186264 intron CG34393 - chr2L 3186407 intron CG34393 - chr2L_4_3185001 chr2L_3185001 RAL-409_95b 44 chr2L 3186469 3186495 chr2L 3186559 3186583 6 87 2.0 2.0 2.0 2.0 114 chr2L 3186469 intron CG34393 - chr2L 3186526 intron CG34393 - chr2L 3186583 intron CG34393 - chr2L_6_3185001 chr2L_3185001 RAL-409_95b 45 chr2L 3202430 3202459 chr2L 3212058 3212070 mdg1 4 9624 2.5 2.0 2.2 1.2 9640 chr2L 3202430 intergenic not near genes chr2L 3207250 intergenic not near genes chr2L 3212070 intergenic not near genes chr2L_4_3205001 chr2L_3205001 RAL-409_95b 46 chr2L 3228518 3228561 chr2L 3228608 3228658 9 87 2.5 1.0 1.8 3.2 140 chr2L 3228518 intergenic not near genes chr2L 3228588 intergenic not near genes chr2L 3228658 intergenic not near genes chr2L_9_3225001 chr2L_3225001 RAL-409_95b 47 chr2L 3232046 3232072 chr2L 3232124 3232173 4 88 7.0 0.0 3.5 0.9 127 chr2L 3232046 intergenic not near genes chr2L 3232110 intergenic not near genes chr2L 3232173 intergenic not near genes chr2L_4_3230001 chr2L_3230001 RAL-409_95b 48 chr2L 3240597 3240637 chr2L 3240976 3241006 10 379 2.0 2.5 2.2 3.1 409 chr2L 3240597 intergenic not near genes chr2L 3240802 intergenic not near genes chr2L 3241006 intergenic not near genes chr2L_10_3240001 chr2L_3240001 RAL-409_95b 49 chr2L 3251475 3251525 chr2L 3259060 3259095 springer 9 7578 2.5 1.5 2.0 3.0 7620 chr2L 3251475 intergenic not near genes chr2L 3255285 intergenic not near genes chr2L 3259095 intergenic not near genes chr2L_9_3255001 chr2L_3255001 RAL-409_95b 50 chr2L 3260708 3260719 chr2L 3260852 3260866 4 143 4.0 3.0 3.5 0.9 158 chr2L 3260708 intergenic CR45337 - chr2L 3260787 intergenic CR45337 - chr2L 3260866 intergenic CR45337 - chr2L_4_3260001 chr2L_3260001 RAL-409_95b 51 chr2L 3486079 3486117 chr2L 3486192 3486231 6 108 3.0 3.5 3.2 1.4 152 chr2L 3486079 intron CG15414 - chr2L 3486155 intron CG15414 - chr2L 3486231 intron CG15414 - chr2L_6_3485001 chr2L_3485001 RAL-409_95b 52 chr2L 3603628 3603651 chr2L 3603726 3603766 6 106 2.5 3.5 3.0 1.5 138 chr2L 3603628 intergenic not near genes chr2L 3603697 intergenic not near genes chr2L 3603766 intergenic odd - chr2L_6_3600001 chr2L_3600001 RAL-409_95b 53 chr2L 3659775 3659790 chr2L 3659874 3659882 4 94 3.5 3.0 3.2 1.0 107 chr2L 3659775 intergenic not near genes chr2L 3659828 intergenic not near genes chr2L 3659882 intergenic not near genes chr2L_4_3655001 chr2L_3655001 RAL-409_95b 54 chr2L 3686026 3686047 chr2L 3686133 3686142 4 104 0.5 1.0 0.8 2.2 116 chr2L 3686026 intron CG34340 + chr2L 3686084 intron CG34340 + chr2L 3686142 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-409_95b 55 chr2L 3693799 3693849 chr2L 3693903 3693934 7 99 1.5 0.5 1.0 3.5 135 chr2L 3693799 exon Acp24A4 - chr2L 3693866 5` UTR Acp24A4 - chr2L 3693934 intergenic Acp24A4 -,CG43165 - chr2L_7_3690001 chr2L_3690001 RAL-409_95b 56 chr2L 3943775 3943823 chr2L 3943886 3943911 5 99 2.0 0.5 1.2 2.3 136 chr2L 3943775 intron fred - chr2L 3943843 intron fred - chr2L 3943911 intron fred - chr2L_5_3940001 chr2L_3940001 RAL-409_95b 57 chr2L 3992930 3992962 chr2L 3993037 3993076 4 102 2.0 0.5 1.2 1.8 146 chr2L 3992930 intergenic not near genes chr2L 3993003 intergenic not near genes chr2L 3993076 intergenic not near genes chr2L_4_3990001 chr2L_3990001 RAL-409_95b 58 chr2L 4150602 4150657 chr2L 4150702 4150731 5 75 0.5 1.5 1.0 2.5 129 chr2L 4150602 exon CG2955 + chr2L 4150666 exon CG2955 + chr2L 4150731 exon CG2955 + chr2L_5_4150001 chr2L_4150001 RAL-409_95b 59 chr2L 4166368 4166406 chr2L 4166459 4166485 7 91 0.5 2.0 1.2 3.2 117 chr2L 4166368 intergenic Or24a - chr2L 4166426 intergenic Or24a - chr2L 4166485 intergenic Or24a - chr2L_7_4165001 chr2L_4165001 RAL-409_95b 60 chr2L 4316814 4316829 chr2L 4316912 4316925 5 95 10.5 10.0 10.2 0.4 111 chr2L 4316814 intron tutl + chr2L 4316870 intron tutl + chr2L 4316925 intron tutl + chr2L_5_4315001 chr2L_4315001 RAL-409_95b 61 chr2L 4601714 4601726 chr2L 4609145 4609150 mdg1 5 7435 5.0 2.5 3.8 1.0 7436 chr2L 4601714 intron dp - chr2L 4605432 intron dp - chr2L 4609150 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-409_95b 62 chr2L 4661828 4661855 chr2L 4669427 4669444 opus 5 7591 3.5 5.0 4.2 1.0 7616 chr2L 4661828 intergenic not near genes chr2L 4665636 intergenic not near genes chr2L 4669444 intergenic not near genes chr2L_5_4665001 chr2L_4665001 RAL-409_95b 63 chr2L 4867723 4867735 chr2L 4867891 4867903 4 167 5.5 2.5 4.0 0.8 180 chr2L 4867723 intron pog + chr2L 4867813 intron pog + chr2L 4867903 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-409_95b 64 chr2L 5040684 5040716 chr2L 5040781 5040820 8 101 1.0 2.5 1.8 2.9 136 chr2L 5040684 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040752 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040820 3` UTR CG31650 - chr2L_8_5040001 chr2L_5040001 RAL-409_95b 65 chr2L 5092416 5092444 chr2L 5092503 5092550 5 92 1.0 0.0 0.5 3.3 134 chr2L 5092416 intron pgant5 - chr2L 5092483 intron pgant5 - chr2L 5092550 intron pgant5 - chr2L_5_5090001 chr2L_5090001 RAL-409_95b 66 chr2L 5117297 5117321 chr2L 5117379 5117420 13 89 2.0 2.5 2.2 4.1 123 chr2L 5117297 intron Msp300 + chr2L 5117358 intron Msp300 + chr2L 5117420 intron Msp300 + chr2L_13_5115001 chr2L_5115001 RAL-409_95b 67 chr2L 5120966 5121005 chr2L 5121067 5121069 7 94 2.0 2.5 2.2 2.2 103 chr2L 5120966 intron Msp300 + chr2L 5121018 intron Msp300 + chr2L 5121069 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-409_95b 68 chr2L 5242858 5242902 chr2L 5243056 5243078 10 196 1.5 1.5 1.5 4.0 220 chr2L 5242858 intron tkv - chr2L 5242968 intron tkv - chr2L 5243078 intron tkv - chr2L_10_5240001 chr2L_5240001 RAL-409_95b 69 chr2L 5253184 5253220 chr2L 5253349 5253349 6 148 4.5 2.5 3.5 1.3 165 chr2L 5253184 intron tkv - chr2L 5253266 intron tkv - chr2L 5253349 intron tkv - chr2L_6_5250001 chr2L_5250001 RAL-409_95b 70 chr2L 5258744 5258759 chr2L 5258842 5258843 4 94 7.0 2.0 4.5 0.7 99 chr2L 5258744 intron tkv - chr2L 5258794 intron tkv - chr2L 5258843 intron tkv - chr2L_4_5255001 chr2L_5255001 RAL-409_95b 71 chr2L 5258761 5258785 chr2L 5258839 5258858 10 85 4.5 1.0 2.8 2.6 97 chr2L 5258761 intron tkv - chr2L 5258810 intron tkv - chr2L 5258858 intron tkv - chr2L_10_5255001 chr2L_5255001 RAL-409_95b 72 chr2L 5459816 5459852 chr2L 5459922 5459948 10 97 3.5 4.0 3.8 2.1 132 chr2L 5459816 intergenic not near genes chr2L 5459882 intergenic not near genes chr2L 5459948 intergenic not near genes chr2L_10_5455001 chr2L_5455001 RAL-409_95b 73 chr2L 5492533 5492791 chr2L 5492631 5492891 13 95 4.0 1.0 2.5 3.7 358 chr2L 5492533 intergenic not near genes chr2L 5492712 intergenic not near genes chr2L 5492891 intergenic not near genes chr2L_13_5490001 chr2L_5490001 RAL-409_95b 74 chr2L 5500057 5500061 chr2L 5500149 5500162 5 97 3.0 1.0 2.0 1.7 105 chr2L 5500057 intergenic not near genes chr2L 5500110 intergenic not near genes chr2L 5500162 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-409_95b 75 chr2L 5508519 5508560 chr2L 5508608 5508653 7 92 0.5 0.5 0.5 4.7 134 chr2L 5508519 intergenic not near genes chr2L 5508586 intergenic not near genes chr2L 5508653 intergenic not near genes chr2L_7_5505001 chr2L_5505001 RAL-409_95b 76 chr2L 5511321 5511347 chr2L 5511408 5511449 6 97 4.0 3.5 3.8 1.2 128 chr2L 5511321 intergenic not near genes chr2L 5511385 intergenic not near genes chr2L 5511449 intergenic not near genes chr2L_6_5510001 chr2L_5510001 RAL-409_95b 77 chr2L 5594318 5594348 chr2L 5594409 5594445 9 98 1.0 1.0 1.0 4.5 127 chr2L 5594318 intergenic not near genes chr2L 5594382 intergenic not near genes chr2L 5594445 intergenic not near genes chr2L_9_5590001 chr2L_5590001 RAL-409_95b 78 chr2L 5827698 5827741 chr2L 5836726 5836768 roo 6 9019 5.0 3.5 4.2 1.2 9070 chr2L 5827698 intron TrissinR + chr2L 5832233 intron TrissinR + chr2L 5836768 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-409_95b 79 chr2L 5931302 5931330 chr2L 5931429 5931447 4 122 3.5 2.5 3.0 1.0 145 chr2L 5931302 intron dsf + chr2L 5931374 intron dsf + chr2L 5931447 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-409_95b 80 chr2L 6078594 6078635 chr2L 6079356 6079411 4 763 5.5 2.5 4.0 0.8 817 chr2L 6078594 5` UTR CR9162 + chr2L 6079002 5` UTR CR9162 + chr2L 6079411 5` UTR CR9162 + chr2L_4_6075001 chr2L_6075001 RAL-409_95b 81 chr2L 6103202 6103248 chr2L 6103294 6103325 5 85 2.5 4.5 3.5 1.1 123 chr2L 6103202 intron stai + chr2L 6103264 intron stai + chr2L 6103325 intron stai + chr2L_5_6100001 chr2L_6100001 RAL-409_95b 82 chr2L 6133576 6133611 chr2L 6133668 6133696 5 99 1.0 1.0 1.0 2.5 120 chr2L 6133576 3` UTR CR45719 - chr2L 6133636 3` UTR CR45719 - chr2L 6133696 intergenic CR45719 - chr2L_5_6130001 chr2L_6130001 RAL-409_95b 83 chr2L 6277507 6277555 chr2L 6277620 6277654 6 104 0.0 6.0 3.0 1.5 147 chr2L 6277507 intron Ddr + chr2L 6277580 intron Ddr + chr2L 6277654 intron Ddr + chr2L_6_6275001 chr2L_6275001 RAL-409_95b 84 chr2L 6308310 6308331 chr2L 6308397 6308410 4 89 6.5 7.0 6.8 0.5 100 chr2L 6308310 intron Ddr + chr2L 6308360 intron Ddr + chr2L 6308410 intron,3` UTR Ddr +,CG43922 - chr2L_4_6305001 chr2L_6305001 RAL-409_95b 85 chr2L 6363129 6363177 chr2L 6366070 6366110 Burdock 7 2934 1.0 2.0 1.5 2.8 2981 chr2L 6363129 intergenic not near genes chr2L 6364620 intergenic not near genes chr2L 6366110 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-409_95b 86 chr2L 6421893 6421933 chr2L 6421992 6422015 5 84 1.0 0.0 0.5 3.3 122 chr2L 6421893 exon Tig - chr2L 6421954 intron Tig - chr2L 6422015 intron Tig - chr2L_5_6420001 chr2L_6420001 RAL-409_95b 87 chr2L 6426862 6426886 chr2L 6445130 6445144 roo 9 18265 4.5 4.5 4.5 1.6 18282 chr2L 6426862 3` UTR CG9527 - chr2L 6436003 intron CG9527 - chr2L 6445144 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-409_95b 88 chr2L 6544359 6544393 chr2L 6544465 6544483 9 103 4.0 2.0 3.0 2.2 124 chr2L 6544359 intron eya - chr2L 6544421 intron eya - chr2L 6544483 intron eya - chr2L_9_6540001 chr2L_6540001 RAL-409_95b 89 chr2L 6626870 6626888 chr2L 6626975 6626993 5 101 7.5 2.0 4.8 0.9 123 chr2L 6626870 intron Oatp26F - chr2L 6626932 intron Oatp26F - chr2L 6626993 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-409_95b 90 chr2L 6626890 6626919 chr2L 6626974 6626997 4 80 5.0 2.0 3.5 0.9 107 chr2L 6626890 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6626997 intron Oatp26F - chr2L_4_6625001 chr2L_6625001 RAL-409_95b 91 chr2L 6640922 6640935 chr2L 6641010 6641033 7 96 3.0 5.5 4.2 1.3 111 chr2L 6640922 exon CG31635 - chr2L 6640978 intron CG31635 - chr2L 6641033 intron CG31635 - chr2L_7_6640001 chr2L_6640001 RAL-409_95b 92 chr2L 6799530 6799556 chr2L 6799624 6799648 7 95 3.0 1.5 2.2 2.2 118 chr2L 6799530 5` UTR CR43610 + chr2L 6799589 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-409_95b 93 chr2L 6850375 6850412 chr2L 6850460 6850515 5 86 2.5 3.5 3.0 1.2 140 chr2L 6850375 intergenic not near genes chr2L 6850445 intergenic not near genes chr2L 6850515 intergenic not near genes chr2L_5_6850001 chr2L_6850001 RAL-409_95b 94 chr2L 7042054 7042087 chr2L 7042157 7042196 4 107 1.5 0.5 1.0 2.0 142 chr2L 7042054 intron milt + chr2L 7042125 intron milt + chr2L 7042196 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-409_95b 95 chr2L 7126860 7126874 chr2L 7126959 7126970 4 98 1.0 0.0 0.5 2.7 110 chr2L 7126860 intron Pvf3 - chr2L 7126915 intron Pvf3 - chr2L 7126970 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-409_95b 96 chr2L 7493656 7493666 chr2L 7493887 7493888 4 228 9.5 2.0 5.8 0.6 232 chr2L 7493656 intron Ziz - chr2L 7493772 intron Ziz - chr2L 7493888 intron Ziz - chr2L_4_7490001 chr2L_7490001 RAL-409_95b 97 chr2L 7493674 7493703 chr2L 7493885 7493912 7 215 6.0 2.0 4.0 1.4 238 chr2L 7493674 intron Ziz - chr2L 7493793 intron Ziz - chr2L 7493912 intron Ziz - chr2L_7_7490001 chr2L_7490001 RAL-409_95b 98 chr2L 7555202 7555229 chr2L 7555297 7555309 5 84 1.0 2.5 1.8 1.8 107 chr2L 7555202 intron RapGAP1 - chr2L 7555256 intron RapGAP1 - chr2L 7555309 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-409_95b 99 chr2L 7702883 7702916 chr2L 7703063 7703099 9 173 4.0 5.0 4.5 1.6 216 chr2L 7702883 5` UTR Tep3 + chr2L 7702991 5` UTR Tep3 + chr2L 7703099 5` UTR Tep3 + chr2L_9_7700001 chr2L_7700001 RAL-409_95b 100 chr2L 7829249 7829300 chr2L 7829367 7829412 8 108 2.0 3.0 2.5 2.3 163 chr2L 7829249 intron mts + chr2L 7829330 intron mts + chr2L 7829412 intron mts + chr2L_8_7825001 chr2L_7825001 RAL-409_95b 101 chr2L 7903588 7903625 chr2L 7903681 7903733 8 92 2.0 3.5 2.8 2.1 145 chr2L 7903588 intron Snoo - chr2L 7903660 intron Snoo - chr2L 7903733 intron Snoo - chr2L_8_7900001 chr2L_7900001 RAL-409_95b 102 chr2L 8003048 8003068 chr2L 8003133 8003147 5 89 0.0 2.0 1.0 2.5 99 chr2L 8003048 intron Wwox - chr2L 8003098 intron Wwox - chr2L 8003147 intron Wwox - chr2L_5_8000001 chr2L_8000001 RAL-409_95b 103 chr2L 8044097 8044125 chr2L 8044175 8044201 5 80 2.0 3.0 2.5 1.4 104 chr2L 8044097 intron CG7466 + chr2L 8044149 intron CG7466 + chr2L 8044201 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-409_95b 104 chr2L 8171288 8171298 chr2L 8171359 8171377 7 85 0.0 1.5 0.8 3.9 89 chr2L 8171288 intron Piezo + chr2L 8171332 intron Piezo + chr2L 8171377 intron Piezo + chr2L_7_8170001 chr2L_8170001 RAL-409_95b 105 chr2L 8325954 8325988 chr2L 8326054 8326089 9 92 1.5 2.0 1.8 3.2 135 chr2L 8325954 intergenic not near genes chr2L 8326022 intergenic not near genes chr2L 8326089 intergenic not near genes chr2L_9_8325001 chr2L_8325001 RAL-409_95b 106 chr2L 8442785 8442828 chr2L 8442884 8442923 11 88 1.5 1.5 1.5 4.4 138 chr2L 8442785 exon CG31897 + chr2L 8442854 exon CG31897 + chr2L 8442923 exon CG31897 + chr2L_11_8440001 chr2L_8440001 RAL-409_95b 107 chr2L 8452193 8452229 chr2L 8462003 8462050 roo 9 9809 1.0 4.0 2.5 2.6 9857 chr2L 8452193 intron fu12 - chr2L 8457122 intron fu12 - chr2L 8462050 intron fu12 - chr2L_9_8455001 chr2L_8455001 RAL-409_95b 108 chr2L 8698334 8698351 chr2L 8698471 8698509 5 147 6.0 1.0 3.5 1.1 175 chr2L 8698334 intron Hnf4 - chr2L 8698422 intron Hnf4 - chr2L 8698509 intron Hnf4 - chr2L_5_8695001 chr2L_8695001 RAL-409_95b 109 chr2L 8723105 8723147 chr2L 8731494 8731525 Tirant 9 8384 3.5 2.0 2.8 2.4 8420 chr2L 8723105 intron raw - chr2L 8727315 intron raw - chr2L 8731525 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-409_95b 110 chr2L 8784705 8784721 chr2L 8784816 8784828 4 112 3.5 2.0 2.8 1.1 123 chr2L 8784705 intergenic not near genes chr2L 8784766 intergenic not near genes chr2L 8784828 intergenic not near genes chr2L_4_8780001 chr2L_8780001 RAL-409_95b 111 chr2L 8789297 8789339 chr2L 8789382 8789419 15 80 2.0 4.5 3.2 3.6 122 chr2L 8789297 intergenic not near genes chr2L 8789358 intergenic not near genes chr2L 8789419 intergenic not near genes chr2L_15_8785001 chr2L_8785001 RAL-409_95b 112 chr2L 8938414 8938433 chr2L 8938500 8938517 4 92 2.5 5.0 3.8 0.8 103 chr2L 8938414 intron Tsp29Fb + chr2L 8938466 intron Tsp29Fb + chr2L 8938517 intron Tsp29Fb + chr2L_4_8935001 chr2L_8935001 RAL-409_95b 113 chr2L 9000277 9000294 chr2L 9007788 9007812 roo 6 7520 5.5 2.5 4.0 1.2 7535 chr2L 9000277 intergenic Try29F + chr2L 9004044 intergenic not near genes chr2L 9007812 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-409_95b 114 chr2L 9173057 9173093 chr2L 9173153 9173182 4 93 2.0 2.5 2.2 1.2 125 chr2L 9173057 intron tai + chr2L 9173120 intron tai + chr2L 9173182 intron tai + chr2L_4_9170001 chr2L_9170001 RAL-409_95b 115 chr2L 9202063 9202080 chr2L 9202135 9202144 9 75 5.5 4.5 5.0 1.5 81 chr2L 9202063 intron tai + chr2L 9202104 intron tai + chr2L 9202144 intron tai + chr2L_9_9200001 chr2L_9200001 RAL-409_95b 116 chr2L 9251129 9251175 chr2L 9251246 9251275 10 102 3.5 6.5 5.0 1.7 146 chr2L 9251129 intergenic aust -,borr - chr2L 9251202 intergenic aust -,borr - chr2L 9251275 intergenic borr -,aust - chr2L_10_9250001 chr2L_9250001 RAL-409_95b 117 chr2L 9264346 9264380 chr2L 9264447 9264461 9 102 3.0 4.5 3.8 1.9 115 chr2L 9264346 intron Ggamma30A + chr2L 9264404 intron Ggamma30A + chr2L 9264461 intron Ggamma30A + chr2L_9_9260001 chr2L_9260001 RAL-409_95b 118 chr2L 9270736 9270759 chr2L 9270837 9270858 7 99 6.5 3.5 5.0 1.2 122 chr2L 9270736 intron Ggamma30A + chr2L 9270797 intron Ggamma30A + chr2L 9270858 intron Ggamma30A + chr2L_7_9270001 chr2L_9270001 RAL-409_95b 119 chr2L 9278875 9278919 chr2L 9278984 9279015 6 95 3.0 1.0 2.0 2.0 140 chr2L 9278875 intron Ggamma30A + chr2L 9278945 intron Ggamma30A + chr2L 9279015 intron Ggamma30A + chr2L_6_9275001 chr2L_9275001 RAL-409_95b 120 chr2L 9283215 9283434 chr2L 9283317 9283528 9 88 2.5 0.0 1.2 4.1 313 chr2L 9283215 intron Ggamma30A + chr2L 9283372 intron Ggamma30A + chr2L 9283528 intron Ggamma30A + chr2L_9_9280001 chr2L_9280001 RAL-409_95b 121 chr2L 9297371 9297401 chr2L 9297462 9297493 7 88 5.5 5.0 5.2 1.1 122 chr2L 9297371 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297493 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-409_95b 122 chr2L 9303472 9303488 chr2L 9303549 9303581 4 84 0.0 2.0 1.0 2.0 109 chr2L 9303472 intergenic not near genes chr2L 9303526 intergenic not near genes chr2L 9303581 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-409_95b 123 chr2L 9393483 9393526 chr2L 9396463 9396513 jockey 11 2977 2.5 4.0 3.2 2.6 3030 chr2L 9393483 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396513 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-409_95b 124 chr2L 9454966 9455003 chr2L 9455078 9455101 13 110 2.5 1.5 2.0 4.3 135 chr2L 9454966 intron numb + chr2L 9455034 intron numb + chr2L 9455101 intron numb + chr2L_13_9455001 chr2L_9455001 RAL-409_95b 125 chr2L 9456949 9456952 chr2L 9457027 9457048 5 90 0.0 3.5 1.8 1.8 99 chr2L 9456949 intron numb + chr2L 9456998 intron numb + chr2L 9457048 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-409_95b 126 chr2L 9632978 9633000 chr2L 9633096 9633141 7 132 1.0 3.5 2.2 2.2 163 chr2L 9632978 intergenic not near genes chr2L 9633060 intergenic not near genes chr2L 9633141 intergenic not near genes chr2L_7_9630001 chr2L_9630001 RAL-409_95b 127 chr2L 9831210 9831244 chr2L 9831292 9831317 5 82 3.0 0.0 1.5 2.0 107 chr2L 9831210 intron nAChRalpha6 - chr2L 9831264 intron nAChRalpha6 - chr2L 9831317 intron nAChRalpha6 - chr2L_5_9830001 chr2L_9830001 RAL-409_95b 128 chr2L 9873131 9873161 chr2L 9873405 9873440 8 278 1.5 1.5 1.5 3.2 309 chr2L 9873131 intron nAChRalpha6 - chr2L 9873286 intron nAChRalpha6 - chr2L 9873440 intron nAChRalpha6 - chr2L_8_9870001 chr2L_9870001 RAL-409_95b 129 chr2L 9973722 9973730 chr2L 9980844 9980853 HMS-Beagle 4 7127 6.5 5.0 5.8 0.6 7131 chr2L 9973722 intergenic not near genes chr2L 9977288 intergenic not near genes chr2L 9980853 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-409_95b 130 chr2L 9973731 9973759 chr2L 9980843 9980871 HMS-Beagle 12 7112 2.5 5.0 3.8 2.5 7140 chr2L 9973731 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_12_9975001 chr2L_9975001 RAL-409_95b 131 chr2L 10051739 10051753 chr2L 10051812 10051823 8 78 3.5 3.0 3.2 1.9 84 chr2L 10051739 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051823 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-409_95b 132 chr2L 10114353 10114377 chr2L 10114452 10114477 7 112 0.5 2.5 1.5 2.8 124 chr2L 10114353 intron,intron CG44153 -,CG34109 + chr2L 10114415 intron,intron CG44153 -,CG34109 + chr2L 10114477 intron,intron CG44153 -,CG34109 + chr2L_7_10110001 chr2L_10110001 RAL-409_95b 133 chr2L 10131293 10131312 chr2L 10131389 10131404 6 96 2.0 2.0 2.0 2.0 111 chr2L 10131293 intron CG44153 - chr2L 10131348 intron CG44153 - chr2L 10131404 intron CG44153 - chr2L_6_10130001 chr2L_10130001 RAL-409_95b 134 chr2L 10156349 10156355 chr2L 10163796 10163829 blood 4 7463 3.5 4.0 3.8 0.8 7480 chr2L 10156349 intron,3` UTR CG44153 -,CG4839 + chr2L 10160089 intron CG44153 - chr2L 10163829 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-409_95b 135 chr2L 10515340 10515391 chr2L 10515452 10515494 7 106 2.5 1.5 2.0 2.3 154 chr2L 10515340 intron,intron CG45083 -,Fatp - chr2L 10515417 intron,intron CG45083 -,Fatp - chr2L 10515494 intron,intron CG45083 -,Fatp - chr2L_7_10515001 chr2L_10515001 RAL-409_95b 136 chr2L 10609266 10609313 chr2L 10609370 10609410 4 100 2.0 1.0 1.5 1.6 144 chr2L 10609266 intron Trim9 + chr2L 10609338 intron Trim9 + chr2L 10609410 intron Trim9 + chr2L_4_10605001 chr2L_10605001 RAL-409_95b 137 chr2L 10640620 10640670 chr2L 10640729 10640757 6 98 6.0 4.5 5.2 1.0 137 chr2L 10640620 exon CG31872 + chr2L 10640688 exon CG31872 + chr2L 10640757 exon CG31872 + chr2L_6_10640001 chr2L_10640001 RAL-409_95b 138 chr2L 10862868 10862873 chr2L 10864461 10864479 Rt1c 4 1604 2.0 4.5 3.2 1.0 1611 chr2L 10862868 3` UTR CR43807 - chr2L 10863674 intron CR43807 - chr2L 10864479 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-409_95b 139 chr2L 10919798 10919820 chr2L 10919899 10919913 5 93 1.0 1.5 1.2 2.3 115 chr2L 10919798 intron dpr2 - chr2L 10919856 intron dpr2 - chr2L 10919913 intron dpr2 - chr2L_5_10915001 chr2L_10915001 RAL-409_95b 140 chr2L 10945071 10945090 chr2L 10945332 10945349 6 260 2.5 2.5 2.5 1.7 278 chr2L 10945071 intron dpr2 - chr2L 10945210 intron dpr2 - chr2L 10945349 intron dpr2 - chr2L_6_10945001 chr2L_10945001 RAL-409_95b 141 chr2L 10946947 10946967 chr2L 10956160 10956186 roo 5 9218 1.5 4.5 3.0 1.2 9239 chr2L 10946947 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956186 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-409_95b 142 chr2L 11246746 11246777 chr2L 11246859 11246874 6 109 3.5 1.0 2.2 1.9 128 chr2L 11246746 intron ab + chr2L 11246810 intron ab + chr2L 11246874 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-409_95b 143 chr2L 11292374 11292406 chr2L 11292464 11292495 7 93 2.5 3.5 3.0 1.8 121 chr2L 11292374 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292495 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-409_95b 144 chr2L 11563642 11563668 chr2L 11568846 11568864 copia 4 5201 1.0 2.0 1.5 1.6 5222 chr2L 11563642 intergenic not near genes chr2L 11566253 intergenic not near genes chr2L 11568864 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-409_95b 145 chr2L 11614067 11614086 chr2L 11615556 11615571 hopper2 4 1489 1.0 2.5 1.8 1.4 1504 chr2L 11614067 intron kek2 + chr2L 11614819 intron kek2 + chr2L 11615571 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-409_95b 146 chr2L 11633150 11633199 chr2L 11633268 11633299 4 107 1.5 2.5 2.0 1.3 149 chr2L 11633150 intergenic not near genes chr2L 11633224 intergenic not near genes chr2L 11633299 intergenic not near genes chr2L_4_11630001 chr2L_11630001 RAL-409_95b 147 chr2L 11682953 11682992 chr2L 11683139 11683160 7 179 4.0 1.5 2.8 1.8 207 chr2L 11682953 intergenic not near genes chr2L 11683056 intergenic not near genes chr2L 11683160 intergenic not near genes chr2L_7_11680001 chr2L_11680001 RAL-409_95b 148 chr2L 11713527 11713540 chr2L 11720986 11721027 blood 4 7469 3.0 5.5 4.2 0.8 7500 chr2L 11713527 intergenic not near genes chr2L 11717277 intergenic not near genes chr2L 11721027 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-409_95b 149 chr2L 11726664 11726689 chr2L 11726781 11726807 7 122 1.5 3.0 2.2 2.2 143 chr2L 11726664 intergenic not near genes chr2L 11726736 intergenic not near genes chr2L 11726807 intergenic not near genes chr2L_7_11725001 chr2L_11725001 RAL-409_95b 150 chr2L 11743745 11743775 chr2L 11743820 11743845 5 79 4.0 3.5 3.8 1.0 100 chr2L 11743745 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743795 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743845 exon,3` UTR Vha100-5 +,CR44144 - chr2L_5_11740001 chr2L_11740001 RAL-409_95b 151 chr2L 11769940 11769951 chr2L 11770017 11770047 4 86 3.5 2.5 3.0 1.0 107 chr2L 11769940 intergenic not near genes chr2L 11769994 intergenic not near genes chr2L 11770047 intergenic not near genes chr2L_4_11765001 chr2L_11765001 RAL-409_95b 152 chr2L 12067315 12067357 chr2L 12074387 12074419 297 4 7064 1.5 3.5 2.5 1.1 7104 chr2L 12067315 intergenic not near genes chr2L 12070867 intergenic not near genes chr2L 12074419 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-409_95b 153 chr2L 12234039 12234055 chr2L 12234133 12234147 4 92 4.5 3.5 4.0 0.8 108 chr2L 12234039 intron aret + chr2L 12234093 intron aret + chr2L 12234147 intron aret + chr2L_4_12230001 chr2L_12230001 RAL-409_95b 154 chr2L 12266096 12266126 chr2L 12266179 12266228 7 90 3.5 0.5 2.0 2.3 132 chr2L 12266096 intron aret + chr2L 12266162 intron aret + chr2L 12266228 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-409_95b 155 chr2L 12410988 12411037 chr2L 12411087 12411115 6 84 1.5 1.0 1.2 2.7 127 chr2L 12410988 intron vir-1 - chr2L 12411052 intron vir-1 - chr2L 12411115 intron vir-1 - chr2L_6_12410001 chr2L_12410001 RAL-409_95b 156 chr2L 12487902 12487918 chr2L 12487966 12488014 5 81 3.0 4.5 3.8 1.0 112 chr2L 12487902 intron bun - chr2L 12487958 intron bun - chr2L 12488014 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-409_95b 157 chr2L 12529227 12529429 chr2L 12529380 12529505 8 96 0.5 1.0 0.8 4.4 278 chr2L 12529227 intron bun - chr2L 12529366 intron bun - chr2L 12529505 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-409_95b 158 chr2L 12558321 12558352 chr2L 12565457 12565498 HMS-Beagle 5 7137 1.0 3.5 2.2 1.6 7177 chr2L 12558321 intergenic not near genes chr2L 12561910 intergenic not near genes chr2L 12565498 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-409_95b 159 chr2L 12728899 12728951 chr2L 12729162 12729188 pogo 6 250 4.0 1.5 2.8 1.6 289 chr2L 12728899 intron MRP + chr2L 12729044 intron MRP + chr2L 12729188 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-409_95b 160 chr2L 12739168 12739198 chr2L 12743960 12743997 Doc 10 4795 1.5 4.5 3.0 2.5 4829 chr2L 12739168 exon MRP + chr2L 12741582 intron MRP + chr2L 12743997 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-409_95b 161 chr2L 12791609 12791628 chr2L 12795284 12795306 F-element 5 3672 4.0 2.5 3.2 1.2 3697 chr2L 12791609 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795306 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-409_95b 162 chr2L 12861701 12861719 chr2L 12863171 12863189 hobo 6 1466 2.5 3.5 3.0 1.5 1488 chr2L 12861701 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863189 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-409_95b 163 chr2L 12933831 12933865 chr2L 12941318 12941352 blood 4 7480 9.5 1.0 5.2 0.6 7521 chr2L 12933831 intergenic not near genes chr2L 12937592 intergenic not near genes chr2L 12941352 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-409_95b 164 chr2L 13122401 13122425 chr2L 13122511 13122540 5 107 6.5 1.5 4.0 1.0 139 chr2L 13122401 intergenic not near genes chr2L 13122470 intergenic not near genes chr2L 13122540 intergenic not near genes chr2L_5_13120001 chr2L_13120001 RAL-409_95b 165 chr2L 13152225 13152260 chr2L 13152307 13152338 17 83 3.0 2.5 2.8 4.5 113 chr2L 13152225 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152338 intergenic not near genes chr2L_17_13150001 chr2L_13150001 RAL-409_95b 166 chr2L 13334238 13334266 chr2L 13334397 13334446 5 167 2.5 3.0 2.8 1.3 208 chr2L 13334238 intergenic not near genes chr2L 13334342 intergenic not near genes chr2L 13334446 intergenic not near genes chr2L_5_13330001 chr2L_13330001 RAL-409_95b 167 chr2L 13341775 13341797 chr2L 13342388 13342414 6 614 1.0 1.0 1.0 3.0 639 chr2L 13341775 intergenic not near genes chr2L 13342094 intergenic not near genes chr2L 13342414 intergenic not near genes chr2L_6_13340001 chr2L_13340001 RAL-409_95b 168 chr2L 13405648 13405679 chr2L 13410445 13410496 Doc 8 4807 4.5 1.0 2.8 2.1 4848 chr2L 13405648 exon CG7110 + chr2L 13408072 intron CG7110 + chr2L 13410496 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-409_95b 169 chr2L 13449483 13449496 chr2L 13456925 13456930 Quasimodo 4 7442 0.5 4.0 2.2 1.2 7447 chr2L 13449483 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453206 intron CG42784 + chr2L 13456930 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-409_95b 170 chr2L 13672156 13672181 chr2L 13672247 13672272 4 89 3.5 0.0 1.8 1.4 116 chr2L 13672156 exon CG18507 + chr2L 13672214 3` UTR CG18507 + chr2L 13672272 intron CG18507 + chr2L_4_13670001 chr2L_13670001 RAL-409_95b 171 chr2L 13710981 13710999 chr2L 13711222 13711248 4 245 1.0 2.5 1.8 1.4 267 chr2L 13710981 intron CG31814 - chr2L 13711114 intron CG31814 - chr2L 13711248 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-409_95b 172 chr2L 13725747 13725770 chr2L 13725848 13725857 7 94 0.0 3.0 1.5 2.8 110 chr2L 13725747 intergenic not near genes chr2L 13725802 intergenic not near genes chr2L 13725857 intergenic not near genes chr2L_7_13725001 chr2L_13725001 RAL-409_95b 173 chr2L 13988290 13988392 chr2L 13988378 13988478 5 89 0.0 0.0 0.0 5.0 188 chr2L 13988290 intron rk - chr2L 13988384 intron rk - chr2L 13988478 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-409_95b 174 chr2L 14063269 14063301 chr2L 14063355 14063376 6 87 1.0 1.5 1.2 2.7 107 chr2L 14063269 intron nAChRalpha5 + chr2L 14063322 intron nAChRalpha5 + chr2L 14063376 intron nAChRalpha5 + chr2L_6_14060001 chr2L_14060001 RAL-409_95b 175 chr2L 14374784 14374800 chr2L 14374874 14374899 4 97 3.0 4.5 3.8 0.8 115 chr2L 14374784 intergenic not near genes chr2L 14374842 intergenic not near genes chr2L 14374899 intergenic not near genes chr2L_4_14370001 chr2L_14370001 RAL-409_95b 176 chr2L 14419257 14419278 chr2L 14419841 14419842 4 574 4.5 1.5 3.0 1.0 585 chr2L 14419257 intergenic not near genes chr2L 14419550 intergenic not near genes chr2L 14419842 intergenic not near genes chr2L_4_14415001 chr2L_14415001 RAL-409_95b 177 chr2L 14464000 14464029 chr2L 14464081 14464131 5 97 2.5 2.5 2.5 1.4 131 chr2L 14464000 intergenic not near genes chr2L 14464066 intergenic not near genes chr2L 14464131 intergenic not near genes chr2L_5_14460001 chr2L_14460001 RAL-409_95b 178 chr2L 14525568 14525597 chr2L 14525665 14525699 4 100 4.5 1.0 2.8 1.1 131 chr2L 14525568 exon CG33648 + chr2L 14525634 3` UTR CG33648 + chr2L 14525699 intergenic CG33648 + chr2L_4_14525001 chr2L_14525001 RAL-409_95b 179 chr2L 14549146 14549176 chr2L 14549234 14549258 11 86 2.5 4.5 3.5 2.4 112 chr2L 14549146 intergenic CG4218 - chr2L 14549202 intergenic CG4218 - chr2L 14549258 intergenic CG4218 - chr2L_11_14545001 chr2L_14545001 RAL-409_95b 180 chr2L 14562304 14562342 chr2L 14562410 14562447 6 97 3.5 2.5 3.0 1.5 143 chr2L 14562304 intergenic not near genes chr2L 14562376 intergenic not near genes chr2L 14562447 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-409_95b 181 chr2L 14586198 14586230 chr2L 14586280 14586295 10 80 4.5 5.0 4.8 1.7 97 chr2L 14586198 intergenic not near genes chr2L 14586246 intergenic not near genes chr2L 14586295 intergenic not near genes chr2L_10_14585001 chr2L_14585001 RAL-409_95b 182 chr2L 14588379 14588419 chr2L 14588535 14588574 8 157 3.0 2.0 2.5 2.3 195 chr2L 14588379 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-409_95b 183 chr2L 14707188 14707236 chr2L 14707327 14707359 12 130 5.5 2.5 4.0 2.4 171 chr2L 14707188 intergenic not near genes chr2L 14707274 intergenic not near genes chr2L 14707359 intergenic not near genes chr2L_12_14705001 chr2L_14705001 RAL-409_95b 184 chr2L 14707589 14707608 chr2L 14708600 14708614 7 1009 4.0 9.0 6.5 0.9 1025 chr2L 14707589 intergenic not near genes chr2L 14708102 intergenic not near genes chr2L 14708614 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-409_95b 185 chr2L 14706730 14706760 chr2L 14708993 14709027 5 2260 14.0 16.0 15.0 0.3 2297 chr2L 14706730 intergenic not near genes chr2L 14707878 intergenic not near genes chr2L 14709027 intergenic not near genes chr2L_5_14705001 chr2L_14705001 RAL-409_95b 186 chr2L 14716613 14716637 chr2L 14716691 14716711 4 81 3.0 4.0 3.5 0.9 98 chr2L 14716613 intergenic not near genes chr2L 14716662 intergenic not near genes chr2L 14716711 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-409_95b 187 chr2L 14803883 14803904 chr2L 14809081 14809126 copia 7 5204 6.0 4.5 5.2 1.1 5243 chr2L 14803883 intergenic not near genes chr2L 14806504 intergenic not near genes chr2L 14809126 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-409_95b 188 chr2L 14840987 14841006 chr2L 14841062 14841111 4 89 4.5 2.0 3.2 1.0 124 chr2L 14840987 3` UTR CR43805 - chr2L 14841049 3` UTR CR43805 - chr2L 14841111 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-409_95b 189 chr2L 14887674 14887693 chr2L 14887772 14887788 6 92 2.5 1.5 2.0 2.0 114 chr2L 14887674 intergenic not near genes chr2L 14887731 intergenic not near genes chr2L 14887788 intergenic not near genes chr2L_6_14885001 chr2L_14885001 RAL-409_95b 190 chr2L 14889935 14889975 chr2L 14890377 14890420 jockey 6 437 3.0 3.0 3.0 1.5 485 chr2L 14889935 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890420 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-409_95b 191 chr2L 14984368 14984397 chr2L 14991987 14991996 opus 5 7609 4.0 4.0 4.0 1.0 7628 chr2L 14984368 intron mol - chr2L 14988182 intron mol - chr2L 14991996 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-409_95b 192 chr2L 15252988 15253006 chr2L 15253071 15253097 8 92 0.5 1.5 1.0 4.0 109 chr2L 15252988 intron dao + chr2L 15253042 intron dao + chr2L 15253097 intron dao + chr2L_8_15250001 chr2L_15250001 RAL-409_95b 193 chr2L 15446053 15446082 chr2L 15453520 15453571 blood 4 7473 1.5 1.0 1.2 1.8 7518 chr2L 15446053 intergenic not near genes chr2L 15449812 intergenic not near genes chr2L 15453571 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-409_95b 194 chr2L 15636678 15636691 chr2L 15636758 15636763 4 76 0.0 1.5 0.8 2.2 85 chr2L 15636678 intergenic not near genes chr2L 15636720 intergenic not near genes chr2L 15636763 intergenic not near genes chr2L_4_15635001 chr2L_15635001 RAL-409_95b 195 chr2L 15956022 15956059 chr2L 15957489 15957504 hobo 7 1460 2.0 2.5 2.2 2.2 1482 chr2L 15956022 intron beat-Ib - chr2L 15956763 intron beat-Ib - chr2L 15957504 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-409_95b 196 chr2L 16058122 16058149 chr2L 16058282 16058306 4 160 2.5 1.5 2.0 1.3 184 chr2L 16058122 intron beat-Ia + chr2L 16058214 intron beat-Ia + chr2L 16058306 intron beat-Ia + chr2L_4_16055001 chr2L_16055001 RAL-409_95b 197 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 14.5 19.0 16.8 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-409_95b 198 chr2L 16141172 16141196 chr2L 16146376 16146423 copia 5 5219 0.5 3.0 1.8 1.8 5251 chr2L 16141172 intergenic not near genes chr2L 16143798 intergenic not near genes chr2L 16146423 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-409_95b 199 chr2L 16153745 16153750 chr2L 16160813 16160813 297 5 7071 7.0 3.5 5.2 0.8 7068 chr2L 16153745 intergenic not near genes chr2L 16157279 intergenic not near genes chr2L 16160813 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-409_95b 200 chr2L 16197124 16197144 chr2L 16197799 16197828 5 683 2.5 0.5 1.5 2.0 704 chr2L 16197124 intergenic not near genes chr2L 16197476 intergenic not near genes chr2L 16197828 intergenic not near genes chr2L_5_16195001 chr2L_16195001 RAL-409_95b 201 chr2L 9084336 9084339 chr2L 16217660 16217660 4 7133323 6.5 19.0 12.8 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-409_95b 202 chr2L 16243703 16243859 chr2L 16243780 16243960 7 100 3.0 4.0 3.5 1.6 257 chr2L 16243703 exon CG42818 + chr2L 16243832 exon CG42818 + chr2L 16243960 exon CG42818 + chr2L_7_16240001 chr2L_16240001 RAL-409_95b 203 chr2L 16254873 16254917 chr2L 16255150 16255178 15 267 4.5 3.5 4.0 3.0 305 chr2L 16254873 intron PRL-1 - chr2L 16255026 intron PRL-1 - chr2L 16255178 intron PRL-1 - chr2L_15_16255001 chr2L_16255001 RAL-409_95b 204 chr2L 16363957 16363967 chr2L 16364209 16364233 4 257 1.0 3.0 2.0 1.3 276 chr2L 16363957 intergenic not near genes chr2L 16364095 intergenic not near genes chr2L 16364233 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-409_95b 205 chr2L 16384779 16384814 chr2L 16384876 16384895 4 92 0.5 0.0 0.2 3.3 116 chr2L 16384779 intergenic not near genes chr2L 16384837 intergenic not near genes chr2L 16384895 intergenic not near genes chr2L_4_16380001 chr2L_16380001 RAL-409_95b 206 chr2L 16455796 16455839 chr2L 16455897 16455914 7 89 1.0 2.5 1.8 2.5 118 chr2L 16455796 intergenic not near genes chr2L 16455855 intergenic not near genes chr2L 16455914 intergenic not near genes chr2L_7_16455001 chr2L_16455001 RAL-409_95b 207 chr2L 16470835 16470882 chr2L 16470936 16470969 6 94 2.5 3.0 2.8 1.6 134 chr2L 16470835 intron dac - chr2L 16470902 intron dac - chr2L 16470969 intron dac - chr2L_6_16470001 chr2L_16470001 RAL-409_95b 208 chr2L 16544123 16544151 chr2L 16544198 16544245 6 85 1.5 0.5 1.0 3.0 122 chr2L 16544123 intergenic not near genes chr2L 16544184 intergenic not near genes chr2L 16544245 intergenic not near genes chr2L_6_16540001 chr2L_16540001 RAL-409_95b 209 chr2L 16570830 16570854 chr2L 16570924 16570950 4 95 0.5 1.0 0.8 2.2 120 chr2L 16570830 intron CG42389 + chr2L 16570890 intron CG42389 + chr2L 16570950 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-409_95b 210 chr2L 16654452 16654471 chr2L 16654567 16654608 7 127 1.0 5.0 3.0 1.8 156 chr2L 16654452 intron CG42389 + chr2L 16654530 intron CG42389 + chr2L 16654608 intron CG42389 + chr2L_7_16650001 chr2L_16650001 RAL-409_95b 211 chr2L 16693911 16693936 chr2L 16693994 16694037 6 93 2.5 0.5 1.5 2.4 126 chr2L 16693911 intron grp + chr2L 16693974 intron grp + chr2L 16694037 intron grp + chr2L_6_16690001 chr2L_16690001 RAL-409_95b 212 chr2L 16695259 16695288 chr2L 16695343 16695361 5 81 2.0 0.0 1.0 2.5 102 chr2L 16695259 intron grp + chr2L 16695310 intron grp + chr2L 16695361 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-409_95b 213 chr2L 16728921 16728957 chr2L 16729559 16729591 6 644 3.0 2.0 2.5 1.7 670 chr2L 16728921 intergenic not near genes chr2L 16729256 intergenic not near genes chr2L 16729591 intergenic CG31812 + chr2L_6_16725001 chr2L_16725001 RAL-409_95b 214 chr2L 16818811 16818860 chr2L 16818906 16818932 10 84 1.0 0.0 0.5 6.7 121 chr2L 16818811 intron,intron CG13280 -,mdy + chr2L 16818872 intron,intron CG13280 -,mdy + chr2L 16818932 intron,intron CG13280 -,mdy + chr2L_10_16815001 chr2L_16815001 RAL-409_95b 215 chr2L 17019755 17019764 chr2L 17019836 17019849 5 83 2.0 2.5 2.2 1.6 94 chr2L 17019755 intergenic not near genes chr2L 17019802 intergenic not near genes chr2L 17019849 intergenic not near genes chr2L_5_17015001 chr2L_17015001 RAL-409_95b 216 chr2L 17101901 17101913 chr2L 17101979 17101986 7 81 1.5 3.0 2.2 2.2 85 chr2L 17101901 intergenic not near genes chr2L 17101944 intergenic not near genes chr2L 17101986 intergenic not near genes chr2L_7_17100001 chr2L_17100001 RAL-409_95b 217 chr2L 17222565 17222588 chr2L 17223187 17223240 5 640 1.0 4.5 2.8 1.3 675 chr2L 17222565 intron beat-IIIc - chr2L 17222902 intron beat-IIIc - chr2L 17223240 intron beat-IIIc - chr2L_5_17220001 chr2L_17220001 RAL-409_95b 218 chr2L 17273177 17273226 chr2L 17277980 17277991 F-element 4 4783 2.5 1.5 2.0 1.3 4814 chr2L 17273177 intergenic not near genes chr2L 17275584 intergenic not near genes chr2L 17277991 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-409_95b 219 chr2L 17327900 17327916 chr2L 17328001 17328002 5 96 7.0 2.5 4.8 0.9 102 chr2L 17327900 intergenic not near genes chr2L 17327951 intergenic not near genes chr2L 17328002 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-409_95b 220 chr2L 17327917 17327924 chr2L 17327998 17328015 5 93 4.5 2.5 3.5 1.1 98 chr2L 17327917 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-409_95b 221 chr2L 17623665 17623688 chr2L 17623900 17623920 6 238 4.0 1.5 2.8 1.6 255 chr2L 17623665 intergenic not near genes chr2L 17623792 intergenic not near genes chr2L 17623920 intergenic not near genes chr2L_6_17620001 chr2L_17620001 RAL-409_95b 222 chr2L 17637184 17637200 chr2L 17637269 17637290 5 90 2.5 2.0 2.2 1.6 106 chr2L 17637184 intergenic not near genes chr2L 17637237 intergenic not near genes chr2L 17637290 intergenic not near genes chr2L_5_17635001 chr2L_17635001 RAL-409_95b 223 chr2L 17692944 17692974 chr2L 17693061 17693086 4 122 1.5 0.5 1.0 2.0 142 chr2L 17692944 intron CadN - chr2L 17693015 intron CadN - chr2L 17693086 intron CadN - chr2L_4_17690001 chr2L_17690001 RAL-409_95b 224 chr2L 17741972 17741987 chr2L 17742036 17742060 4 73 3.5 1.5 2.5 1.1 88 chr2L 17741972 intron CadN - chr2L 17742016 intron CadN - chr2L 17742060 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-409_95b 225 chr2L 17819905 17819952 chr2L 17825128 17825155 copia 7 5213 3.5 2.0 2.8 1.8 5250 chr2L 17819905 intron CadN2 - chr2L 17822530 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-409_95b 226 chr2L 17891456 17891494 chr2L 17891553 17891568 5 93 2.0 6.0 4.0 1.0 112 chr2L 17891456 intergenic not near genes chr2L 17891512 intergenic not near genes chr2L 17891568 intergenic not near genes chr2L_5_17890001 chr2L_17890001 RAL-409_95b 227 chr2L 17944400 17944445 chr2L 17944583 17944627 8 176 1.0 2.0 1.5 3.2 227 chr2L 17944400 intergenic not near genes chr2L 17944514 intergenic not near genes chr2L 17944627 intergenic not near genes chr2L_8_17940001 chr2L_17940001 RAL-409_95b 228 chr2L 17951942 17951974 chr2L 17953410 17953449 hobo 12 1473 4.0 2.5 3.2 2.9 1507 chr2L 17951942 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953449 intergenic not near genes chr2L_12_17950001 chr2L_17950001 RAL-409_95b 229 chr2L 18051857 18051904 chr2L 18061024 18061047 roo 8 9147 1.5 4.0 2.8 2.1 9190 chr2L 18051857 intron rdo + chr2L 18056452 intron rdo + chr2L 18061047 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-409_95b 230 chr2L 18274037 18274061 chr2L 18274126 18274141 5 88 5.5 2.0 3.8 1.0 104 chr2L 18274037 intron CG42750 - chr2L 18274089 intron CG42750 - chr2L 18274141 intron CG42750 - chr2L_5_18270001 chr2L_18270001 RAL-409_95b 231 chr2L 18291535 18291557 chr2L 18291629 18291660 4 96 0.5 0.0 0.2 3.3 125 chr2L 18291535 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291598 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291660 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_4_18290001 chr2L_18290001 RAL-409_95b 232 chr2L 18408019 18408045 chr2L 18412807 18412834 Doc 5 4788 2.5 0.0 1.2 2.3 4815 chr2L 18408019 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412834 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-409_95b 233 chr2L 18442356 18442376 chr2L 18442436 18442438 10 85 0.0 1.0 0.5 6.7 82 chr2L 18442356 3` UTR RpS26 - chr2L 18442397 3` UTR RpS26 - chr2L 18442438 3` UTR RpS26 - chr2L_10_18440001 chr2L_18440001 RAL-409_95b 234 chr2L 18464790 18464821 chr2L 18464874 18464904 12 88 1.0 0.5 0.8 6.7 114 chr2L 18464790 intron let-7-C + chr2L 18464847 intron let-7-C + chr2L 18464904 intron let-7-C + chr2L_12_18460001 chr2L_18460001 RAL-409_95b 235 chr2L 18538554 18538599 chr2L 18538652 18538677 6 84 0.5 2.0 1.2 2.7 123 chr2L 18538554 intron Pde11 - chr2L 18538616 intron Pde11 - chr2L 18538677 intron Pde11 - chr2L_6_18535001 chr2L_18535001 RAL-409_95b 236 chr2L 18812568 18812573 chr2L 18812822 18812835 4 270 2.5 3.5 3.0 1.0 267 chr2L 18812568 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812835 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-409_95b 237 chr2L 18812576 18812588 chr2L 18812821 18812846 5 259 1.5 3.5 2.5 1.4 270 chr2L 18812576 intergenic CG17325 +,CG42305 + chr2L 18812711 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812846 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-409_95b 238 chr2L 18883865 18883876 chr2L 18883937 18883967 4 86 5.5 2.0 3.8 0.8 102 chr2L 18883865 intergenic not near genes chr2L 18883916 intergenic not near genes chr2L 18883967 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-409_95b 239 chr2L 18898378 18898424 chr2L 18898478 18898526 8 93 5.5 0.5 3.0 2.0 148 chr2L 18898378 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898526 intergenic not near genes chr2L_8_18895001 chr2L_18895001 RAL-409_95b 240 chr2L 19147381 19147401 chr2L 19154411 19154438 297 6 7038 3.0 2.0 2.5 1.7 7057 chr2L 19147381 intron brat + chr2L 19150910 intron brat + chr2L 19154438 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-409_95b 241 chr2L 19183347 19183357 chr2L 19183431 19183457 4 96 2.0 4.0 3.0 1.0 110 chr2L 19183347 intron CR17567 - chr2L 19183402 3` UTR CR17567 - chr2L 19183457 intron CR17567 - chr2L_4_19180001 chr2L_19180001 RAL-409_95b 242 chr2L 19345027 19345044 chr2L 19357222 19357223 blood 5 12201 2.0 2.5 2.2 1.6 12196 chr2L 19345027 intron dnt - chr2L 19351125 intron dnt - chr2L 19357223 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-409_95b 243 chr2L 19357536 19357560 chr2L 19357637 19357649 8 99 10.0 10.0 10.0 0.7 113 chr2L 19357536 intron dnt - chr2L 19357592 intron dnt - chr2L 19357649 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-409_95b 244 chr2L 19357564 19357568 chr2L 19357635 19357678 5 95 7.0 10.0 8.5 0.5 114 chr2L 19357564 intron dnt - chr2L 19357621 intron dnt - chr2L 19357678 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-409_95b 245 chr2L 19361882 19361910 chr2L 19361965 19361994 9 92 1.0 1.0 1.0 4.5 112 chr2L 19361882 intron dnt - chr2L 19361938 intron dnt - chr2L 19361994 intron dnt - chr2L_9_19360001 chr2L_19360001 RAL-409_95b 246 chr2L 19380506 19380522 chr2L 19380586 19380622 6 93 3.0 1.5 2.2 1.9 116 chr2L 19380506 intergenic CG17350 + chr2L 19380564 intergenic CG17350 + chr2L 19380622 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-409_95b 247 chr2L 19452439 19452465 chr2L 19452560 19452592 7 132 1.5 0.5 1.0 3.5 153 chr2L 19452439 intron Top2 - chr2L 19452516 intron Top2 - chr2L 19452592 5` UTR Top2 - chr2L_7_19450001 chr2L_19450001 RAL-409_95b 248 chr2L 19562533 19562562 chr2L 19562614 19562639 6 84 4.0 3.5 3.8 1.2 106 chr2L 19562533 intron Tep5 + chr2L 19562586 intron Tep5 + chr2L 19562639 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-409_95b 249 chr2L 19566134 19566162 chr2L 19566211 19566235 7 73 4.0 2.0 3.0 1.8 101 chr2L 19566134 5` UTR CG13077 + chr2L 19566184 exon CG13077 + chr2L 19566235 exon CG13077 + chr2L_7_19565001 chr2L_19565001 RAL-409_95b 250 chr2L 19605530 19605557 chr2L 19605607 19605641 4 76 1.5 2.5 2.0 1.3 111 chr2L 19605530 intron Lar + chr2L 19605586 intron Lar + chr2L 19605641 intron Lar + chr2L_4_19605001 chr2L_19605001 RAL-409_95b 251 chr2L 19620081 19620121 chr2L 19621084 19621130 jockey 7 995 5.0 3.5 4.2 1.3 1049 chr2L 19620081 intron Lar + chr2L 19620606 intron Lar + chr2L 19621130 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-409_95b 252 chr2L 19652577 19652596 chr2L 19674005 19674026 opus 7 21437 7.5 4.5 6.0 1.0 21449 chr2L 19652577 intron Lar + chr2L 19663302 intron Lar + chr2L 19674026 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-409_95b 253 chr2L 19703539 19703568 chr2L 19712676 19712704 roo 8 9139 2.5 3.5 3.0 2.0 9165 chr2L 19703539 intron Lar + chr2L 19708122 intron Lar + chr2L 19712704 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-409_95b 254 chr2L 19737363 19737388 chr2L 19740832 19740841 1360 5 3464 2.0 2.5 2.2 1.6 3478 chr2L 19737363 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740841 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-409_95b 255 chr2L 19762801 19762830 chr2L 19763062 19763078 pogo 4 250 2.0 1.5 1.8 1.4 277 chr2L 19762801 5` UTR fbp - chr2L 19762940 intron fbp - chr2L 19763078 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-409_95b 256 chr2L 19801169 19801189 chr2L 19801429 19801462 6 269 5.5 2.5 4.0 1.2 293 chr2L 19801169 intron sick + chr2L 19801316 intron sick + chr2L 19801462 intron sick + chr2L_6_19800001 chr2L_19800001 RAL-409_95b 257 chr2L 19837268 19837309 chr2L 19837356 19837391 14 87 4.0 2.0 3.0 3.5 123 chr2L 19837268 intron sick + chr2L 19837330 intron sick + chr2L 19837391 intron sick + chr2L_14_19835001 chr2L_19835001 RAL-409_95b 258 chr2L 20005874 20005902 chr2L 20010947 20010977 flea 6 5080 2.5 2.5 2.5 1.7 5103 chr2L 20005874 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010977 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-409_95b 259 chr2L 20014121 20014154 chr2L 20014284 20014336 13 169 1.5 1.0 1.2 5.9 215 chr2L 20014121 intron CG43861 - chr2L 20014228 intron CG43861 - chr2L 20014336 intron CG43861 - chr2L_13_20010001 chr2L_20010001 RAL-409_95b 260 chr2L 20036524 20036554 chr2L 20036617 20036658 5 97 1.5 4.0 2.8 1.3 134 chr2L 20036524 intron sNPF + chr2L 20036591 intron sNPF + chr2L 20036658 intron sNPF + chr2L_5_20035001 chr2L_20035001 RAL-409_95b 261 chr2L 20085480 20085499 chr2L 20085556 20085583 8 87 2.0 2.0 2.0 2.7 103 chr2L 20085480 intron neb + chr2L 20085532 intron neb + chr2L 20085583 intron neb + chr2L_8_20085001 chr2L_20085001 RAL-409_95b 262 chr2L 20298823 20298854 chr2L 20298909 20298956 10 94 2.0 2.0 2.0 3.3 133 chr2L 20298823 intergenic not near genes chr2L 20298890 intergenic not near genes chr2L 20298956 intergenic not near genes chr2L_10_20295001 chr2L_20295001 RAL-409_95b 263 chr2L 20310884 20310893 chr2L 20310967 20310983 4 93 1.5 3.5 2.5 1.1 99 chr2L 20310884 intergenic spir + chr2L 20310934 intergenic spir + chr2L 20310983 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-409_95b 264 chr2L 20498700 20498708 chr2L 20498798 20498802 4 103 1.0 3.0 2.0 1.3 102 chr2L 20498700 intergenic not near genes chr2L 20498751 intergenic not near genes chr2L 20498802 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-409_95b 265 chr2L 20571112 20571155 chr2L 20571211 20571253 6 93 6.5 3.0 4.8 1.0 141 chr2L 20571112 intron CR45347 + chr2L 20571182 intron CR45347 + chr2L 20571253 intron CR45347 + chr2L_6_20570001 chr2L_20570001 RAL-409_95b 266 chr2L 20576220 20576243 chr2L 20583685 20583707 blood 10 7471 4.5 2.5 3.5 2.2 7487 chr2L 20576220 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583707 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-409_95b 267 chr2L 20668689 20668701 chr2L 20668767 20668797 6 86 4.0 1.0 2.5 1.7 108 chr2L 20668689 intron CG31678 - chr2L 20668743 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_6_20665001 chr2L_20665001 RAL-409_95b 268 chr2L 20695792 20695829 chr2L 20695882 20695884 12 94 2.5 3.5 3.0 3.0 92 chr2L 20695792 intron Hr38 - chr2L 20695838 intron Hr38 - chr2L 20695884 intron Hr38 - chr2L_12_20695001 chr2L_20695001 RAL-409_95b 269 chr2L 20840039 20840050 chr2L 20840246 20840260 5 215 4.0 2.5 3.2 1.2 221 chr2L 20840039 intergenic not near genes chr2L 20840150 intergenic not near genes chr2L 20840260 intergenic CG31676 + chr2L_5_20840001 chr2L_20840001 RAL-409_95b 270 chr2L 20846758 20846793 chr2L 20846845 20846861 8 83 1.5 1.5 1.5 3.2 103 chr2L 20846758 intron CG31676 + chr2L 20846810 intron CG31676 + chr2L 20846861 intron CG31676 + chr2L_8_20845001 chr2L_20845001 RAL-409_95b 271 chr2L 20901484 20901488 chr2L 20902641 20902652 1360 4 1162 1.0 2.0 1.5 1.6 1168 chr2L 20901484 intron,intron CG43739 -,sky - chr2L 20902068 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-409_95b 272 chr2L 20911020 20911058 chr2L 20911102 20911128 10 85 4.5 3.0 3.8 2.1 108 chr2L 20911020 intron,intron CG43739 -,sky - chr2L 20911074 intron,intron CG43739 -,sky - chr2L 20911128 intron,intron CG43739 -,sky - chr2L_10_20910001 chr2L_20910001 RAL-409_95b 273 chr2L 20946942 20946953 chr2L 20947031 20947052 5 89 6.5 5.5 6.0 0.7 110 chr2L 20946942 intergenic CR44606 - chr2L 20946997 intergenic CR44606 - chr2L 20947052 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-409_95b 274 chr2L 20967079 20967095 chr2L 20967169 20967201 4 102 3.0 2.5 2.8 1.1 122 chr2L 20967079 3` UTR CG42238 - chr2L 20967140 3` UTR CG42238 - chr2L 20967201 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-409_95b 275 chr2L 20991041 20991069 chr2L 20991119 20991167 7 83 3.0 7.0 5.0 1.2 126 chr2L 20991041 intron CG42238 - chr2L 20991104 intron CG42238 - chr2L 20991167 intron CG42238 - chr2L_7_20990001 chr2L_20990001 RAL-409_95b 276 chr2L 21020270 21020305 chr2L 21023950 21023969 NOF 5 3681 1.5 1.0 1.2 2.3 3699 chr2L 21020270 intron CG42238 - chr2L 21022120 intron CG42238 - chr2L 21023969 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-409_95b 277 chr2L 21041133 21041162 chr2L 21049402 21049403 Tirant 4 8262 2.5 3.5 3.0 1.0 8270 chr2L 21041133 intron CG42238 - chr2L 21045268 intron CG42238 - chr2L 21049403 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-409_95b 278 chr2L 21074925 21074951 chr2L 21075012 21075061 5 97 1.5 1.0 1.2 2.3 136 chr2L 21074925 intergenic tadr + chr2L 21074993 intergenic tadr + chr2L 21075061 intergenic tadr + chr2L_5_21070001 chr2L_21070001 RAL-409_95b 279 chr2L 21086428 21086453 chr2L 21086537 21086564 5 112 2.5 1.0 1.8 1.8 136 chr2L 21086428 5` UTR CG33509 - chr2L 21086496 5` UTR CG33509 - chr2L 21086564 intergenic CG33509 -,ppk13 - chr2L_5_21085001 chr2L_21085001 RAL-409_95b 280 chr2L 21158889 21158911 chr2L 21158957 21159006 10 80 4.0 1.0 2.5 2.9 117 chr2L 21158889 intergenic CG9248 +,CG9249 - chr2L 21158948 5` UTR CG9248 + chr2L 21159006 5` UTR CG9248 + chr2L_10_21155001 chr2L_21155001 RAL-409_95b 281 chr2L 21245272 21245299 chr2L 21245514 21245531 5 241 2.0 3.0 2.5 1.4 259 chr2L 21245272 intron Hr39 + chr2L 21245402 intron Hr39 + chr2L 21245531 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-409_95b 282 chr2L 21286617 21286635 chr2L 21286692 21286714 7 80 2.0 1.0 1.5 2.8 97 chr2L 21286617 exon Mio - chr2L 21286666 intron Mio - chr2L 21286714 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-409_95b 283 chr2L 21597031 21597054 chr2L 21604771 21604809 roo 6 7751 1.5 2.0 1.8 2.1 7778 chr2L 21597031 intergenic not near genes chr2L 21600920 intergenic not near genes chr2L 21604809 intergenic not near genes chr2L_6_21600001 chr2L_21600001 RAL-409_95b 284 chr2L 21653193 21653223 chr2L 21656494 21656547 invader4 4 3316 0.5 1.5 1.0 2.0 3354 chr2L 21653193 intergenic not near genes chr2L 21654870 intergenic not near genes chr2L 21656547 intergenic not near genes chr2L_4_21650001 chr2L_21650001 RAL-409_95b 285 chr2L 21755484 21755522 chr2L 21755620 21755650 8 133 1.0 3.5 2.2 2.5 166 chr2L 21755484 intron step - chr2L 21755567 intron step - chr2L 21755650 intron step - chr2L_8_21755001 chr2L_21755001 RAL-409_95b 286 chr2L 21771225 21771254 chr2L 21771334 21771378 9 117 0.5 2.5 1.5 3.6 153 chr2L 21771225 intron CG31612 - chr2L 21771302 intron CG31612 - chr2L 21771378 intron CG31612 - chr2L_9_21770001 chr2L_21770001 RAL-409_95b 287 chr2L 21819332 21819357 chr2L 21819418 21819450 4 87 3.5 3.5 3.5 0.9 118 chr2L 21819332 intergenic CR44786 + chr2L 21819391 intergenic CR44786 + chr2L 21819450 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-409_95b 288 chr2L 21981688 21981711 chr2L 21990853 21990875 roo 8 9173 3.0 7.5 5.2 1.3 9187 chr2L 21981688 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990875 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-409_95b 289 chr2L 22049234 22049253 chr2L 22049324 22049329 4 85 3.5 2.0 2.8 1.1 95 chr2L 22049234 intergenic not near genes chr2L 22049282 intergenic not near genes chr2L 22049329 intergenic not near genes chr2L_4_22045001 chr2L_22045001 RAL-409_95b 290 chr2L 22239405 22239458 chr2L 22239506 22239559 11 91 4.5 2.5 3.5 2.4 154 chr2L 22239405 intron CR43765 - chr2L 22239482 3` UTR CR43765 - chr2L 22239559 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-409_95b 291 chr2L 22258606 22258648 chr2L 22260749 22260791 G6 6 2138 1.5 3.5 2.5 1.7 2185 chr2L 22258606 intergenic Tif-IA + chr2L 22259698 intergenic not near genes chr2L 22260791 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-409_95b 292 chr2L 22545983 22545994 chr2L 22546082 22546092 4 100 5.5 2.5 4.0 0.8 109 chr2L 22545983 intron CG17490 + chr2L 22546038 intron CG17490 + chr2L 22546092 intron CG17490 + chr2L_4_22545001 chr2L_22545001 RAL-409_95b 293 chr2L 22548926 22548945 chr2L 22550157 22550175 1360 4 1236 0.0 6.5 3.2 1.0 1249 chr2L 22548926 intergenic CG17490 + chr2L 22549550 intergenic not near genes chr2L 22550175 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-409_95b 294 chr2L 22644175 22644181 chr2L 22644263 22644271 5 93 6.0 4.0 5.0 0.8 96 chr2L 22644175 intron CG40006 - chr2L 22644223 intron CG40006 - chr2L 22644271 intron CG40006 - chr2L_5_22640001 chr2L_22640001 RAL-409_95b 295 chr2R 469956 469971 chr2R 473195 473210 F-element 4 3240 1.0 2.0 1.5 1.6 3254 chr2R 469956 intergenic not near genes chr2R 471583 intergenic not near genes chr2R 473210 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-409_95b 296 chr2R 2015138 2015165 chr2R 2015212 2015228 5 77 1.0 0.5 0.8 2.8 90 chr2R 2015138 intron CG17684 - chr2R 2015183 intron CG17684 - chr2R 2015228 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-409_95b 297 chr2R 2498973 2499014 chr2R 2508139 2508163 roo 7 9162 3.0 4.5 3.8 1.5 9190 chr2R 2498973 intron MFS17 - chr2R 2503568 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-409_95b 298 chr2R 2591544 2591565 chr2R 2594217 2594231 roo 4 2674 25.0 10.5 17.8 0.2 2687 chr2R 2591544 intergenic not near genes chr2R 2592888 intergenic not near genes chr2R 2594231 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-409_95b 299 chr2R 3287362 3287402 chr2R 3287682 3287721 5 307 3.0 3.5 3.2 1.2 359 chr2R 3287362 intergenic not near genes chr2R 3287542 intergenic not near genes chr2R 3287721 intergenic not near genes chr2R_5_3285001 chr2R_3285001 RAL-409_95b 300 chr2R 3292655 3292676 chr2R 3292732 3292756 4 79 5.0 4.5 4.8 0.7 101 chr2R 3292655 intergenic not near genes chr2R 3292706 intergenic not near genes chr2R 3292756 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-409_95b 301 chr2R 4015317 4015348 chr2R 4015492 4015518 5 173 0.5 3.5 2.0 1.7 201 chr2R 4015317 intron Haspin + chr2R 4015418 intron Haspin + chr2R 4015518 intron Haspin + chr2R_5_4015001 chr2R_4015001 RAL-409_95b 302 chr2R 4604558 4604582 chr2R 4604632 4604667 6 85 2.0 2.5 2.2 1.9 109 chr2R 4604558 intron p120ctn + chr2R 4604612 intron p120ctn + chr2R 4604667 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-409_95b 303 chr2R 4622963 4622987 chr2R 4624112 4624152 1360 6 1160 1.5 4.5 3.0 1.5 1189 chr2R 4622963 intergenic CR44101 - chr2R 4623558 intergenic not near genes chr2R 4624152 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-409_95b 304 chr2R 4688106 4688120 chr2R 4688198 4688210 8 96 2.0 0.5 1.2 3.6 104 chr2R 4688106 intergenic not near genes chr2R 4688158 intergenic not near genes chr2R 4688210 intergenic not near genes chr2R_8_4685001 chr2R_4685001 RAL-409_95b 305 chr2R 4783242 4783264 chr2R 4783387 4783397 4 141 1.5 4.0 2.8 1.1 155 chr2R 4783242 intergenic not near genes chr2R 4783320 intergenic not near genes chr2R 4783397 intergenic not near genes chr2R_4_4780001 chr2R_4780001 RAL-409_95b 306 chr2R 4908917 4908943 chr2R 4909003 4909047 10 95 2.5 6.5 4.5 1.8 130 chr2R 4908917 intergenic not near genes chr2R 4908982 intergenic not near genes chr2R 4909047 intergenic not near genes chr2R_10_4905001 chr2R_4905001 RAL-409_95b 307 chr2R 4916096 4916117 chr2R 4916177 4916196 6 86 2.0 0.0 1.0 3.0 100 chr2R 4916096 intergenic not near genes chr2R 4916146 intergenic not near genes chr2R 4916196 intergenic not near genes chr2R_6_4915001 chr2R_4915001 RAL-409_95b 308 chr2R 4938492 4938525 chr2R 4938634 4938656 8 142 5.0 5.5 5.2 1.3 164 chr2R 4938492 intron Ir41a + chr2R 4938574 intron Ir41a + chr2R 4938656 intron Ir41a + chr2R_8_4935001 chr2R_4935001 RAL-409_95b 309 chr2R 5188699 5188721 chr2R 5189405 5189412 gypsy8 6 704 6.0 3.5 4.8 1.0 713 chr2R 5188699 intron Nipped-A - chr2R 5189056 intron Nipped-A - chr2R 5189412 intron Nipped-A - chr2R_6_5185001 chr2R_5185001 RAL-409_95b 310 chr2R 5237340 5237373 chr2R 5237430 5237452 7 88 4.5 0.5 2.5 2.0 112 chr2R 5237340 intron Nipped-A - chr2R 5237396 intron Nipped-A - chr2R 5237452 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-409_95b 311 chr2R 5417993 5418016 chr2R 5420627 5420647 Burdock 12 2639 4.0 1.5 2.8 3.2 2654 chr2R 5417993 intron laccase2 + chr2R 5419320 intron laccase2 + chr2R 5420647 intron laccase2 + chr2R_12_5415001 chr2R_5415001 RAL-409_95b 312 chr2R 5476340 5476382 chr2R 5476904 5476922 5 554 3.0 3.0 3.0 1.2 582 chr2R 5476340 intron CG30440 - chr2R 5476631 intron CG30440 - chr2R 5476922 intron CG30440 - chr2R_5_5475001 chr2R_5475001 RAL-409_95b 313 chr2R 5491665 5491688 chr2R 5491758 5491794 5 100 2.5 4.0 3.2 1.2 129 chr2R 5491665 intron CG30440 - chr2R 5491730 intron CG30440 - chr2R 5491794 intron CG30440 - chr2R_5_5490001 chr2R_5490001 RAL-409_95b 314 chr2R 5581401 5581422 chr2R 5627610 5627631 5 46215 0.0 8.0 4.0 1.0 46230 chr2R 5581401 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627631 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-409_95b 315 chr2R 5774281 5774304 chr2R 5774540 5774573 8 262 0.5 2.0 1.2 3.6 292 chr2R 5774281 3` UTR Gp210 + chr2R 5774427 intergenic Gp210 +,ZnT41F - chr2R 5774573 intergenic ZnT41F -,Gp210 + chr2R_8_5770001 chr2R_5770001 RAL-409_95b 316 chr2R 5794223 5794260 chr2R 5794357 5794386 7 126 3.5 2.0 2.8 1.8 163 chr2R 5794223 intergenic not near genes chr2R 5794304 intergenic not near genes chr2R 5794386 intergenic not near genes chr2R_7_5790001 chr2R_5790001 RAL-409_95b 317 chr2R 5859975 5859996 chr2R 5860088 5860104 7 112 5.5 3.0 4.2 1.3 129 chr2R 5859975 3` UTR dpr12 + chr2R 5860040 3` UTR dpr12 + chr2R 5860104 3` UTR dpr12 + chr2R_7_5860001 chr2R_5860001 RAL-409_95b 318 chr2R 5869280 5869302 chr2R 5874351 5874397 flea 12 5082 5.5 5.0 5.2 1.9 5117 chr2R 5869280 intergenic not near genes chr2R 5871838 intergenic not near genes chr2R 5874397 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-409_95b 319 chr2R 5878912 5878953 chr2R 5879011 5879034 8 92 5.5 3.5 4.5 1.5 122 chr2R 5878912 intergenic CG44438 - chr2R 5878973 intergenic CG44438 - chr2R 5879034 intergenic CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-409_95b 320 chr2R 5885228 5885369 chr2R 5885318 5885510 12 108 1.5 1.5 1.5 4.8 282 chr2R 5885228 5` UTR CR44125 + chr2R 5885369 5` UTR CR44125 + chr2R 5885510 5` UTR CR44125 + chr2R_12_5885001 chr2R_5885001 RAL-409_95b 321 chr2R 6065763 6065780 chr2R 6065861 6065906 4 111 2.0 1.5 1.8 1.4 143 chr2R 6065763 intron CCHa2-R + chr2R 6065834 intron CCHa2-R + chr2R 6065906 exon CCHa2-R + chr2R_4_6065001 chr2R_6065001 RAL-409_95b 322 chr2R 6088373 6088386 chr2R 6088463 6088499 4 98 5.5 3.0 4.2 0.8 126 chr2R 6088373 intergenic not near genes chr2R 6088436 intergenic not near genes chr2R 6088499 intergenic not near genes chr2R_4_6085001 chr2R_6085001 RAL-409_95b 323 chr2R 6096717 6096750 chr2R 6101912 6101942 BS 7 5191 4.5 2.5 3.5 1.6 5225 chr2R 6096717 intron EcR - chr2R 6099330 intron EcR - chr2R 6101942 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-409_95b 324 chr2R 6211047 6211073 chr2R 6211270 6211309 6 220 1.0 2.5 1.8 2.1 262 chr2R 6211047 intron l(2)k14710 - chr2R 6211178 intron l(2)k14710 - chr2R 6211309 intron l(2)k14710 - chr2R_6_6210001 chr2R_6210001 RAL-409_95b 325 chr2R 6546706 6546723 chr2R 6546825 6546827 4 115 4.5 6.0 5.2 0.6 121 chr2R 6546706 intron jing + chr2R 6546766 intron jing + chr2R 6546827 intron jing + chr2R_4_6545001 chr2R_6545001 RAL-409_95b 326 chr2R 6546725 6546749 chr2R 6546823 6546847 7 104 2.5 5.5 4.0 1.4 122 chr2R 6546725 intron jing + chr2R 6546786 intron jing + chr2R 6546847 intron jing + chr2R_7_6545001 chr2R_6545001 RAL-409_95b 327 chr2R 6612109 6612155 chr2R 6612209 6612255 7 93 3.0 3.5 3.2 1.7 146 chr2R 6612109 intron jing + chr2R 6612182 intron jing + chr2R 6612255 intron jing + chr2R_7_6610001 chr2R_6610001 RAL-409_95b 328 chr2R 6806808 6806813 chr2R 6806875 6806878 4 80 1.0 1.0 1.0 2.0 70 chr2R 6806808 intergenic not near genes chr2R 6806843 intergenic not near genes chr2R 6806878 intergenic not near genes chr2R_4_6805001 chr2R_6805001 RAL-409_95b 329 chr2R 7102643 7102662 chr2R 7102752 7102757 5 105 2.0 1.5 1.8 1.8 114 chr2R 7102643 intron esn + chr2R 7102700 intron esn + chr2R 7102757 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-409_95b 330 chr2R 7196546 7196579 chr2R 7201341 7201356 F-element 4 4783 2.5 0.5 1.5 1.6 4810 chr2R 7196546 intron pk + chr2R 7198951 intron pk + chr2R 7201356 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-409_95b 331 chr2R 7417907 7418169 chr2R 7417990 7418247 11 90 2.5 5.0 3.8 2.3 340 chr2R 7417907 intergenic not near genes chr2R 7418077 intergenic not near genes chr2R 7418247 intergenic not near genes chr2R_11_7415001 chr2R_7415001 RAL-409_95b 332 chr2R 7434893 7434916 chr2R 7439192 7439213 Juan 4 4300 2.0 4.5 3.2 1.0 4320 chr2R 7434893 intergenic so + chr2R 7437053 intergenic not near genes chr2R 7439213 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-409_95b 333 chr2R 7608388 7608435 chr2R 7613611 7613637 I-element 10 5214 3.0 0.0 1.5 4.0 5249 chr2R 7608388 intron CG1358 - chr2R 7611012 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_10_7610001 chr2R_7610001 RAL-409_95b 334 chr2R 7714071 7714117 chr2R 7714166 7714190 9 78 2.5 0.0 1.2 4.1 119 chr2R 7714071 exon CG1942 + chr2R 7714130 3` UTR CG1942 + chr2R 7714190 intergenic CG1942 + chr2R_9_7710001 chr2R_7710001 RAL-409_95b 335 chr2R 7815659 7815705 chr2R 7822140 7822170 Burdock 7 6473 4.0 3.5 3.8 1.5 6511 chr2R 7815659 intergenic CG1882 + chr2R 7818914 intergenic not near genes chr2R 7822170 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-409_95b 336 chr2R 7897145 7897154 chr2R 7897237 7897262 4 104 0.0 4.0 2.0 1.3 117 chr2R 7897145 intron CG30377 + chr2R 7897204 intron CG30377 + chr2R 7897262 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-409_95b 337 chr2R 7916413 7916454 chr2R 7916516 7916559 5 99 2.5 4.5 3.5 1.1 146 chr2R 7916413 5` UTR CG12159 - chr2R 7916486 intergenic CG12159 -,Cul1 + chr2R 7916559 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-409_95b 338 chr2R 8015676 8015683 chr2R 8017695 8017701 6 2020 1.5 8.5 5.0 1.0 2025 chr2R 8015676 intergenic mir-4981 + chr2R 8016688 intergenic not near genes chr2R 8017701 intergenic not near genes chr2R_6_8015001 chr2R_8015001 RAL-409_95b 339 chr2R 8067044 8067093 chr2R 8067148 8067178 6 91 2.0 2.5 2.2 1.9 134 chr2R 8067044 intron CG17977 - chr2R 8067111 intron CG17977 - chr2R 8067178 exon CG17977 - chr2R_6_8065001 chr2R_8065001 RAL-409_95b 340 chr2R 8076662 8076707 chr2R 8076757 8076807 8 94 2.5 4.5 3.5 1.8 145 chr2R 8076662 intron lig + chr2R 8076734 intron lig + chr2R 8076807 intron lig + chr2R_8_8075001 chr2R_8075001 RAL-409_95b 341 chr2R 8089247 8089278 chr2R 8089345 8089369 6 90 5.0 3.0 4.0 1.2 122 chr2R 8089247 3` UTR sut2 + chr2R 8089308 intergenic sut2 +,sut3 + chr2R 8089369 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-409_95b 342 chr2R 8114030 8114060 chr2R 8114117 8114149 8 93 1.0 1.0 1.0 4.0 119 chr2R 8114030 intergenic Asap - chr2R 8114090 intergenic Asap - chr2R 8114149 intergenic Asap - chr2R_8_8110001 chr2R_8110001 RAL-409_95b 343 chr2R 8249563 8249843 chr2R 8249647 8249935 11 85 1.5 2.0 1.8 3.9 372 chr2R 8249563 5` UTR CG44439 - chr2R 8249749 intergenic CG44439 - chr2R 8249935 intergenic CG44439 - chr2R_11_8245001 chr2R_8245001 RAL-409_95b 344 chr2R 8330858 8330870 chr2R 8331363 8331376 roo 4 504 2.5 5.0 3.8 0.8 518 chr2R 8330858 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-409_95b 345 chr2R 8387431 8387460 chr2R 8387506 8387541 6 79 2.0 1.0 1.5 2.4 110 chr2R 8387431 intron pdm3 + chr2R 8387486 intron pdm3 + chr2R 8387541 intron pdm3 + chr2R_6_8385001 chr2R_8385001 RAL-409_95b 346 chr2R 8398215 8398239 chr2R 8402993 8403015 Doc 5 4780 0.5 0.5 0.5 3.3 4800 chr2R 8398215 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403015 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-409_95b 347 chr2R 8454929 8454955 chr2R 8455870 8455904 4 941 24.0 25.0 24.5 0.2 975 chr2R 8454929 exon Mal-A2 + chr2R 8455416 exon Mal-A2 + chr2R 8455904 intergenic Mal-A3 -,Mal-A2 + chr2R_4_8455001 chr2R_8455001 RAL-409_95b 348 chr2R 8483956 8483979 chr2R 8484046 8484055 4 84 4.0 3.5 3.8 0.8 99 chr2R 8483956 intron mtt - chr2R 8484006 intron mtt - chr2R 8484055 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-409_95b 349 chr2R 8512790 8512821 chr2R 8512876 8512921 9 86 1.0 1.0 1.0 4.5 131 chr2R 8512790 intron mtt - chr2R 8512856 intron mtt - chr2R 8512921 intron mtt - chr2R_9_8510001 chr2R_8510001 RAL-409_95b 350 chr2R 8722773 8722792 chr2R 8723010 8723036 pogo 9 249 4.5 3.0 3.8 1.9 263 chr2R 8722773 intron CG14767 - chr2R 8722904 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-409_95b 351 chr2R 9075890 9075921 chr2R 9076042 9076075 11 149 7.5 2.0 4.8 1.9 185 chr2R 9075890 exon ana + chr2R 9075982 intron ana + chr2R 9076075 intron ana + chr2R_11_9075001 chr2R_9075001 RAL-409_95b 352 chr2R 9151307 9151334 chr2R 9157774 9157814 Burdock 5 6472 2.0 1.5 1.8 1.8 6507 chr2R 9151307 3` UTR CG30345 + chr2R 9154560 intergenic not near genes chr2R 9157814 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-409_95b 353 chr2R 9190311 9190352 chr2R 9190685 9190704 7 365 3.0 3.5 3.2 1.7 393 chr2R 9190311 intron,intron CG45085 -,CG8026 - chr2R 9190508 intron,intron CG45085 -,CG8026 - chr2R 9190704 intron,intron CG45085 -,CG8026 - chr2R_7_9190001 chr2R_9190001 RAL-409_95b 354 chr2R 9212691 9212715 chr2R 9213178 9213189 roo 11 487 2.5 1.0 1.8 3.9 498 chr2R 9212691 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213189 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 RAL-409_95b 355 chr2R 9213622 9213639 chr2R 9213704 9213743 4 94 0.0 2.5 1.2 1.8 121 chr2R 9213622 5` UTR CR45309 + chr2R 9213682 5` UTR CR45309 + chr2R 9213743 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-409_95b 356 chr2R 9368110 9368149 chr2R 9368203 9368205 5 87 3.0 0.0 1.5 2.0 95 chr2R 9368110 intron CG13954 - chr2R 9368158 intron CG13954 - chr2R 9368205 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-409_95b 357 chr2R 9378115 9378140 chr2R 9378193 9378224 9 85 0.5 1.5 1.0 4.5 109 chr2R 9378115 intron CG13954 - chr2R 9378170 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_9_9375001 chr2R_9375001 RAL-409_95b 358 chr2R 9391040 9391083 chr2R 9391615 9391664 6 576 1.5 2.0 1.8 2.1 624 chr2R 9391040 exon l(2)03659 + chr2R 9391352 exon l(2)03659 + chr2R 9391664 exon l(2)03659 + chr2R_6_9390001 chr2R_9390001 RAL-409_95b 359 chr2R 9407528 9407567 chr2R 9408276 9408299 5 739 3.0 1.5 2.2 1.6 771 chr2R 9407528 intron wun - chr2R 9407914 intron wun - chr2R 9408299 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-409_95b 360 chr2R 9455782 9455816 chr2R 9455915 9455932 9 127 2.0 3.5 2.8 2.4 150 chr2R 9455782 intron Camta + chr2R 9455857 intron Camta + chr2R 9455932 intron Camta + chr2R_9_9455001 chr2R_9455001 RAL-409_95b 361 chr2R 9510670 9510696 chr2R 9510787 9510832 8 125 1.0 1.5 1.2 3.6 162 chr2R 9510670 intron brp + chr2R 9510751 intron brp + chr2R 9510832 exon brp + chr2R_8_9510001 chr2R_9510001 RAL-409_95b 362 chr2R 9548572 9548595 chr2R 9548800 9548802 4 220 2.5 2.5 2.5 1.1 230 chr2R 9548572 intergenic not near genes chr2R 9548687 intergenic not near genes chr2R 9548802 intergenic not near genes chr2R_4_9545001 chr2R_9545001 RAL-409_95b 363 chr2R 9561827 9561850 chr2R 9561921 9561939 7 92 0.0 1.5 0.8 3.9 112 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561883 3` UTR,intron CR45281 -,CG1809 + chr2R 9561939 3` UTR,intron CR45281 -,CG1809 + chr2R_7_9560001 chr2R_9560001 RAL-409_95b 364 chr2R 9794530 9794545 chr2R 9794635 9794650 5 102 8.5 2.0 5.2 0.8 120 chr2R 9794530 intron,intron CG1688 -,CG1698 + chr2R 9794590 intron,intron CG1688 -,CG1698 + chr2R 9794650 intron,intron CG1688 -,CG1698 + chr2R_5_9790001 chr2R_9790001 RAL-409_95b 365 chr2R 9794551 9794576 chr2R 9794634 9794665 11 88 3.0 2.0 2.5 3.1 114 chr2R 9794551 intron,intron CG1688 -,CG1698 + chr2R 9794608 intron,intron CG1688 -,CG1698 + chr2R 9794665 intron,intron CG1688 -,CG1698 + chr2R_11_9790001 chr2R_9790001 RAL-409_95b 366 chr2R 9871031 9871071 chr2R 9871536 9871571 roo 4 499 0.5 3.5 2.0 1.3 540 chr2R 9871031 intron cbx - chr2R 9871301 intron cbx - chr2R 9871571 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-409_95b 367 chr2R 9945450 9945472 chr2R 9945629 9945664 BS 5 183 3.0 2.5 2.8 1.3 214 chr2R 9945450 intron Mef2 - chr2R 9945557 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-409_95b 368 chr2R 10005854 10005880 chr2R 10007015 10007051 1360 5 1160 3.0 1.5 2.2 1.6 1197 chr2R 10005854 intron Pka-R2 - chr2R 10006452 intron Pka-R2 - chr2R 10007051 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-409_95b 369 chr2R 10046868 10046888 chr2R 10048059 10048076 5 1193 0.5 3.0 1.8 1.8 1208 chr2R 10046868 intron oys - chr2R 10047472 intron oys - chr2R 10048076 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-409_95b 370 chr2R 10162612 10162647 chr2R 10162693 10162721 7 81 3.0 5.5 4.2 1.3 109 chr2R 10162612 intron KCNQ - chr2R 10162666 intron KCNQ - chr2R 10162721 intron KCNQ - chr2R_7_10160001 chr2R_10160001 RAL-409_95b 371 chr2R 10171122 10171141 chr2R 10171202 10171231 4 91 2.0 4.0 3.0 1.0 109 chr2R 10171122 intron KCNQ - chr2R 10171176 intron KCNQ - chr2R 10171231 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-409_95b 372 chr2R 10172637 10172663 chr2R 10172746 10172783 7 112 1.5 0.5 1.0 3.5 146 chr2R 10172637 intron KCNQ - chr2R 10172710 intron KCNQ - chr2R 10172783 intron KCNQ - chr2R_7_10170001 chr2R_10170001 RAL-409_95b 373 chr2R 10176872 10176908 chr2R 10186061 10186093 roo 4 9183 0.5 2.5 1.5 1.6 9221 chr2R 10176872 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186093 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-409_95b 374 chr2R 10216203 10216212 chr2R 10216285 10216310 4 89 2.0 5.0 3.5 0.9 107 chr2R 10216203 intron,intron CG12912 -,Hr46 - chr2R 10216256 intron,intron CG12912 -,Hr46 - chr2R 10216310 intron,intron CG12912 -,Hr46 - chr2R_4_10215001 chr2R_10215001 RAL-409_95b 375 chr2R 10294981 10294999 chr2R 10295089 10295113 7 117 6.0 3.0 4.5 1.3 132 chr2R 10294981 intron CAP + chr2R 10295047 intron CAP + chr2R 10295113 intron CAP + chr2R_7_10295001 chr2R_10295001 RAL-409_95b 376 chr2R 10313314 10313347 chr2R 10313406 10313434 7 93 0.5 0.5 0.5 4.7 120 chr2R 10313314 intergenic not near genes chr2R 10313374 intergenic not near genes chr2R 10313434 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-409_95b 377 chr2R 10322060 10322077 chr2R 10322160 10322179 4 99 1.5 4.5 3.0 1.0 119 chr2R 10322060 3` UTR Ndg + chr2R 10322120 intergenic Ndg + chr2R 10322179 intergenic Ndg + chr2R_4_10320001 chr2R_10320001 RAL-409_95b 378 chr2R 10352683 10352705 chr2R 10352755 10352790 4 78 0.0 1.5 0.8 2.2 107 chr2R 10352683 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352736 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352790 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-409_95b 379 chr2R 10376239 10376273 chr2R 10376332 10376362 15 89 3.0 7.0 5.0 2.5 123 chr2R 10376239 intron CG42732 - chr2R 10376300 intron CG42732 - chr2R 10376362 intron CG42732 - chr2R_15_10375001 chr2R_10375001 RAL-409_95b 380 chr2R 10409070 10409086 chr2R 10409151 10409165 8 83 1.5 6.0 3.8 1.7 95 chr2R 10409070 intron CG42732 - chr2R 10409118 intron CG42732 - chr2R 10409165 intron,exon CG42732 -,CG33477 - chr2R_8_10405001 chr2R_10405001 RAL-409_95b 381 chr2R 10454093 10454111 chr2R 10454173 10454189 8 83 4.5 2.0 3.2 1.9 96 chr2R 10454093 intron,intron Galphao +,Cyp49a1 - chr2R 10454141 intron,intron Galphao +,Cyp49a1 - chr2R 10454189 intron,intron Galphao +,Cyp49a1 - chr2R_8_10450001 chr2R_10450001 RAL-409_95b 382 chr2R 10454112 10454124 chr2R 10454172 10454183 6 77 2.5 2.0 2.2 1.9 71 chr2R 10454112 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454183 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-409_95b 383 chr2R 10551040 10551169 chr2R 10551151 10551308 4 128 0.0 0.0 0.0 4.0 268 chr2R 10551040 intergenic not near genes chr2R 10551174 intergenic not near genes chr2R 10551308 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-409_95b 384 chr2R 10571989 10572043 chr2R 10572201 10572230 11 197 0.5 0.5 0.5 7.3 241 chr2R 10571989 intron psq + chr2R 10572110 intron psq + chr2R 10572230 intron psq + chr2R_11_10570001 chr2R_10570001 RAL-409_95b 385 chr2R 10585578 10585591 chr2R 10594156 10594170 Tirant 6 8588 0.5 2.5 1.5 2.4 8592 chr2R 10585578 intron psq + chr2R 10589874 intron psq + chr2R 10594170 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-409_95b 386 chr2R 10653212 10653222 chr2R 10653288 10653321 5 81 1.5 2.5 2.0 1.7 109 chr2R 10653212 intergenic not near genes chr2R 10653266 intergenic not near genes chr2R 10653321 intergenic not near genes chr2R_5_10650001 chr2R_10650001 RAL-409_95b 387 chr2R 10827327 10827352 chr2R 10827428 10827458 7 97 5.5 4.0 4.8 1.2 131 chr2R 10827327 exon CG12325 + chr2R 10827392 3` UTR CG12325 + chr2R 10827458 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_7_10825001 chr2R_10825001 RAL-409_95b 388 chr2R 10930893 10930924 chr2R 10931291 10931294 11 392 2.0 1.5 1.8 3.9 401 chr2R 10930893 intergenic not near genes chr2R 10931094 intergenic not near genes chr2R 10931294 intergenic not near genes chr2R_11_10930001 chr2R_10930001 RAL-409_95b 389 chr2R 10937806 10937823 chr2R 10937945 10937958 15 147 0.0 3.0 1.5 6.0 152 chr2R 10937806 intergenic not near genes chr2R 10937882 intergenic not near genes chr2R 10937958 intergenic Spn47C - chr2R_15_10935001 chr2R_10935001 RAL-409_95b 390 chr2R 10976355 10976381 chr2R 10976442 10976479 5 93 0.0 1.0 0.5 3.3 124 chr2R 10976355 intergenic not near genes chr2R 10976417 intergenic not near genes chr2R 10976479 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-409_95b 391 chr2R 10977305 10977333 chr2R 10977404 10977423 4 96 4.0 4.0 4.0 0.8 118 chr2R 10977305 intergenic not near genes chr2R 10977364 intergenic not near genes chr2R 10977423 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-409_95b 392 chr2R 10979670 10979686 chr2R 10980127 10980174 297 5 475 0.0 0.5 0.2 4.2 504 chr2R 10979670 intergenic not near genes chr2R 10979922 intergenic not near genes chr2R 10980174 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-409_95b 393 chr2R 10992952 10992974 chr2R 10993053 10993062 4 98 2.5 4.5 3.5 0.9 110 chr2R 10992952 intron luna - chr2R 10993007 intron luna - chr2R 10993062 intron luna - chr2R_4_10990001 chr2R_10990001 RAL-409_95b 394 chr2R 10993247 10993292 chr2R 10993395 10993416 9 140 3.5 1.5 2.5 2.6 169 chr2R 10993247 intron luna - chr2R 10993332 intron luna - chr2R 10993416 intron luna - chr2R_9_10990001 chr2R_10990001 RAL-409_95b 395 chr2R 11009819 11009843 chr2R 11018999 11019017 roo 4 9174 0.5 4.5 2.5 1.1 9198 chr2R 11009819 intron luna - chr2R 11014418 intron luna - chr2R 11019017 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-409_95b 396 chr2R 11058798 11058810 chr2R 11058877 11058896 5 81 0.5 6.0 3.2 1.2 98 chr2R 11058798 intron luna - chr2R 11058847 intron luna - chr2R 11058896 intron luna - chr2R_5_11055001 chr2R_11055001 RAL-409_95b 397 chr2R 11179275 11179289 chr2R 11179357 11179372 6 82 1.5 5.0 3.2 1.4 97 chr2R 11179275 intron shn + chr2R 11179324 intron shn + chr2R 11179372 intron shn + chr2R_6_11175001 chr2R_11175001 RAL-409_95b 398 chr2R 11207824 11207847 chr2R 11208019 11208038 BS 4 194 5.5 4.5 5.0 0.7 214 chr2R 11207824 intron shn + chr2R 11207931 intron shn + chr2R 11208038 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-409_95b 399 chr2R 11472655 11472678 chr2R 11473849 11473873 pogo 6 1195 3.5 5.0 4.2 1.2 1218 chr2R 11472655 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473873 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-409_95b 400 chr2R 11493273 11493296 chr2R 11493361 11493375 5 89 1.5 3.0 2.2 1.6 102 chr2R 11493273 intron inv + chr2R 11493324 intron inv + chr2R 11493375 intron inv + chr2R_5_11490001 chr2R_11490001 RAL-409_95b 401 chr2R 11928693 11928710 chr2R 11928773 11928806 5 86 1.5 3.0 2.2 1.6 113 chr2R 11928693 intergenic not near genes chr2R 11928750 intergenic CR44312 - chr2R 11928806 intergenic CR44312 - chr2R_5_11925001 chr2R_11925001 RAL-409_95b 402 chr2R 12146476 12146503 chr2R 12147591 12147621 5 1117 17.5 12.5 15.0 0.3 1145 chr2R 12146476 intron,3` UTR Hen1 +,CG8878 - chr2R 12147048 intron,exon Hen1 +,CG8878 - chr2R 12147621 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-409_95b 403 chr2R 12145911 12145915 chr2R 12148609 12148637 11 2692 23.0 25.0 24.0 0.4 2726 chr2R 12145911 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148637 intron,exon Hen1 +,CG8878 - chr2R_11_12145001 chr2R_12145001 RAL-409_95b 404 chr2R 12185985 12186033 chr2R 12186098 12186129 16 108 2.5 3.0 2.8 4.2 144 chr2R 12185985 intron Cyp6g1 + chr2R 12186057 intron Cyp6g1 + chr2R 12186129 intron Cyp6g1 + chr2R_16_12185001 chr2R_12185001 RAL-409_95b 405 chr2R 12187474 12187502 chr2R 12190084 12190116 19 2614 74.0 59.0 66.5 0.3 2642 chr2R 12187474 exon Cyp6g1 + chr2R 12188795 exon Cyp6g2 - chr2R 12190116 exon Cyp6g2 - chr2R_19_12185001 chr2R_12185001 RAL-409_95b 406 chr2R 12187471 12187505 chr2R 12190117 12190124 10 2627 76.5 49.0 62.8 0.2 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_10_12185001 chr2R_12185001 RAL-409_95b 407 chr2R 12235391 12235425 chr2R 12235519 12235552 7 125 1.0 1.0 1.0 3.5 161 chr2R 12235391 intergenic not near genes chr2R 12235472 intergenic not near genes chr2R 12235552 intergenic not near genes chr2R_7_12235001 chr2R_12235001 RAL-409_95b 408 chr2R 12363371 12363393 chr2R 12363823 12363845 5 452 5.0 3.5 4.2 1.0 474 chr2R 12363371 intergenic CG30043 + chr2R 12363608 intergenic CG30043 + chr2R 12363845 intergenic not near genes chr2R_5_12360001 chr2R_12360001 RAL-409_95b 409 chr2R 12363400 12363413 chr2R 12363812 12363844 5 433 2.0 1.5 1.8 1.8 444 chr2R 12363400 intergenic CG30043 + chr2R 12363622 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_5_12360001 chr2R_12360001 RAL-409_95b 410 chr2R 12377481 12377523 chr2R 12377619 12377653 11 132 5.0 2.0 3.5 2.4 172 chr2R 12377481 intergenic Cpr49Aa + chr2R 12377567 intergenic Cpr49Aa + chr2R 12377653 intergenic Cpr49Aa + chr2R_11_12375001 chr2R_12375001 RAL-409_95b 411 chr2R 12504135 12504177 chr2R 12504221 12504274 9 80 4.5 3.5 4.0 1.8 139 chr2R 12504135 intron fdl - chr2R 12504204 intron fdl - chr2R 12504274 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-409_95b 412 chr2R 12527273 12527286 chr2R 12527483 12527505 6 217 2.5 4.0 3.2 1.4 232 chr2R 12527273 intergenic not near genes chr2R 12527389 intergenic not near genes chr2R 12527505 intergenic not near genes chr2R_6_12525001 chr2R_12525001 RAL-409_95b 413 chr2R 12565555 12565594 chr2R 12565943 12565963 9 379 2.5 2.5 2.5 2.6 408 chr2R 12565555 intergenic not near genes chr2R 12565759 intergenic Cyp301a1 + chr2R 12565963 intergenic Cyp301a1 + chr2R_9_12565001 chr2R_12565001 RAL-409_95b 414 chr2R 12602828 12602832 chr2R 12602894 12602913 4 85 0.0 1.5 0.8 2.2 85 chr2R 12602828 intron Amph + chr2R 12602870 intron Amph + chr2R 12602913 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-409_95b 415 chr2R 12627489 12627501 chr2R 12627583 12627614 4 104 0.0 4.5 2.2 1.2 125 chr2R 12627489 intron CG17760 + chr2R 12627552 intron CG17760 + chr2R 12627614 exon CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-409_95b 416 chr2R 12643782 12643814 chr2R 12643868 12643894 4 79 2.5 2.0 2.2 1.2 112 chr2R 12643782 intron CG8785 - chr2R 12643838 intron CG8785 - chr2R 12643894 exon CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-409_95b 417 chr2R 12677376 12677409 chr2R 12677463 12677494 5 90 0.5 1.0 0.8 2.8 118 chr2R 12677376 intron CG42708 - chr2R 12677435 intron CG42708 - chr2R 12677494 intron CG42708 - chr2R_5_12675001 chr2R_12675001 RAL-409_95b 418 chr2R 12855602 12855620 chr2R 12855675 12855718 6 92 2.5 3.5 3.0 1.5 116 chr2R 12855602 intron CG17574 - chr2R 12855660 intron CG17574 - chr2R 12855718 intron CG17574 - chr2R_6_12855001 chr2R_12855001 RAL-409_95b 419 chr2R 13016162 13016188 chr2R 13016233 13016256 6 73 2.0 1.5 1.8 2.1 94 chr2R 13016162 intergenic not near genes chr2R 13016209 intergenic not near genes chr2R 13016256 intergenic not near genes chr2R_6_13015001 chr2R_13015001 RAL-409_95b 420 chr2R 13089736 13089767 chr2R 13089866 13089880 4 125 5.5 2.5 4.0 0.8 144 chr2R 13089736 intergenic not near genes chr2R 13089808 intergenic not near genes chr2R 13089880 intergenic not near genes chr2R_4_13085001 chr2R_13085001 RAL-409_95b 421 chr2R 13123150 13123189 chr2R 13123504 13123549 4 361 3.0 3.0 3.0 1.0 399 chr2R 13123150 5` UTR CG13325 + chr2R 13123350 exon CG13325 + chr2R 13123549 exon CG13325 + chr2R_4_13120001 chr2R_13120001 RAL-409_95b 422 chr2R 13136819 13136863 chr2R 13141637 13141668 Doc 8 4811 4.0 4.5 4.2 1.5 4849 chr2R 13136819 exon Cap-G + chr2R 13139244 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-409_95b 423 chr2R 13167430 13167444 chr2R 13167539 13167555 5 107 2.5 0.5 1.5 2.0 125 chr2R 13167430 intron GLaz - chr2R 13167492 intron GLaz - chr2R 13167555 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-409_95b 424 chr2R 13196564 13196577 chr2R 13197065 13197072 4 500 4.5 2.5 3.5 0.9 508 chr2R 13196564 intergenic not near genes chr2R 13196818 intergenic not near genes chr2R 13197072 intergenic not near genes chr2R_4_13195001 chr2R_13195001 RAL-409_95b 425 chr2R 13220537 13220567 chr2R 13220631 13220666 4 88 0.0 2.5 1.2 1.8 129 chr2R 13220537 intron CG17059 + chr2R 13220602 intron CG17059 + chr2R 13220666 intron CG17059 + chr2R_4_13220001 chr2R_13220001 RAL-409_95b 426 chr2R 13431839 13431860 chr2R 13431946 13431983 12 118 3.0 2.0 2.5 3.4 144 chr2R 13431839 intron CG42321 - chr2R 13431911 intron CG42321 - chr2R 13431983 intron CG42321 - chr2R_12_13430001 chr2R_13430001 RAL-409_95b 427 chr2R 13648709 13648748 chr2R 13649152 13649175 6 430 0.5 2.0 1.2 2.7 466 chr2R 13648709 intron fas + chr2R 13648942 intron fas + chr2R 13649175 intron fas + chr2R_6_13645001 chr2R_13645001 RAL-409_95b 428 chr2R 13721207 13721229 chr2R 13721297 13721311 4 83 3.0 7.5 5.2 0.6 104 chr2R 13721207 intron fas + chr2R 13721259 intron fas + chr2R 13721311 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-409_95b 429 chr2R 13728115 13728167 chr2R 13735789 13735823 opus 5 7668 3.0 1.5 2.2 1.6 7708 chr2R 13728115 intron fas + chr2R 13731969 intron fas + chr2R 13735823 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-409_95b 430 chr2R 13768987 13769010 chr2R 13769080 13769112 5 105 1.0 1.0 1.0 2.5 125 chr2R 13768987 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769112 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-409_95b 431 chr2R 13888744 13888794 chr2R 13888839 13888865 8 82 1.5 0.0 0.8 4.4 121 chr2R 13888744 intron shot - chr2R 13888804 intron shot - chr2R 13888865 intron shot - chr2R_8_13885001 chr2R_13885001 RAL-409_95b 432 chr2R 13905601 13905626 chr2R 13907585 13907628 Rt1a 4 1988 3.0 3.5 3.2 1.0 2027 chr2R 13905601 intron shot - chr2R 13906614 intron shot - chr2R 13907628 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-409_95b 433 chr2R 13925841 13925861 chr2R 13926027 13926027 7 181 5.0 3.0 4.0 1.4 186 chr2R 13925841 intron shot - chr2R 13925934 intron shot - chr2R 13926027 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-409_95b 434 chr2R 14266763 14266787 chr2R 14266839 14266857 5 74 7.0 5.5 6.2 0.7 94 chr2R 14266763 intron CG8547 - chr2R 14266810 intron CG8547 - chr2R 14266857 intron CG8547 - chr2R_5_14265001 chr2R_14265001 RAL-409_95b 435 chr2R 14266788 14266790 chr2R 14266838 14266886 5 79 6.5 5.0 5.8 0.7 98 chr2R 14266788 intron CG8547 - chr2R 14266837 intron CG8547 - chr2R 14266886 intron CG8547 - chr2R_5_14265001 chr2R_14265001 RAL-409_95b 436 chr2R 14467289 14467321 chr2R 14476443 14476479 roo 5 9162 1.5 4.0 2.8 1.3 9190 chr2R 14467289 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476479 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-409_95b 437 chr2R 14497409 14497418 chr2R 14498592 14498615 1360 5 1188 2.0 3.0 2.5 1.4 1206 chr2R 14497409 3` UTR Cpsf160 - chr2R 14498012 intron Cpsf160 - chr2R 14498615 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-409_95b 438 chr2R 14855031 14855062 chr2R 14855122 14855155 6 92 0.5 0.5 0.5 4.0 124 chr2R 14855031 5` UTR Ciao1 - chr2R 14855093 intergenic Ciao1 -,HPS1 + chr2R 14855155 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-409_95b 439 chr2R 14873687 14873711 chr2R 14875208 14875228 4 1524 3.0 1.5 2.2 1.2 1541 chr2R 14873687 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874458 exon Cyp6a17 + chr2R 14875228 exon Cyp6a17 + chr2R_4_14870001 chr2R_14870001 RAL-409_95b 440 chr2R 14875249 14875259 chr2R 14875660 14875690 5 424 1.5 4.5 3.0 1.2 441 chr2R 14875249 exon Cyp6a17 + chr2R 14875470 exon Cyp6a17 + chr2R 14875690 3` UTR Cyp6a17 + chr2R_5_14875001 chr2R_14875001 RAL-409_95b 441 chr2R 14911691 14911724 chr2R 14911834 14911867 5 135 2.5 3.5 3.0 1.2 176 chr2R 14911691 intron CG10249 - chr2R 14911779 intron CG10249 - chr2R 14911867 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-409_95b 442 chr2R 14922126 14922174 chr2R 14922221 14922267 14 84 2.5 4.5 3.5 3.1 141 chr2R 14922126 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922267 intron CG10249 - chr2R_14_14920001 chr2R_14920001 RAL-409_95b 443 chr2R 15001597 15001627 chr2R 15001689 15001724 6 99 1.5 2.0 1.8 2.1 127 chr2R 15001597 intergenic not near genes chr2R 15001660 intergenic not near genes chr2R 15001724 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-409_95b 444 chr2R 15051071 15051110 chr2R 15051164 15051212 13 95 5.5 3.5 4.5 2.4 141 chr2R 15051071 intergenic not near genes chr2R 15051142 intergenic not near genes chr2R 15051212 intergenic not near genes chr2R_13_15050001 chr2R_15050001 RAL-409_95b 445 chr2R 15065620 15065642 chr2R 15065695 15065705 8 73 2.0 1.5 1.8 2.9 85 chr2R 15065620 intergenic not near genes chr2R 15065662 intergenic not near genes chr2R 15065705 intergenic not near genes chr2R_8_15065001 chr2R_15065001 RAL-409_95b 446 chr2R 15119342 15119348 chr2R 15127802 15127825 Tirant 4 8471 3.0 2.5 2.8 1.1 8483 chr2R 15119342 intron chn + chr2R 15123584 intron chn + chr2R 15127825 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-409_95b 447 chr2R 15277085 15277123 chr2R 15277190 15277216 6 105 1.5 0.0 0.8 3.3 131 chr2R 15277085 intron Trpm - chr2R 15277150 intron Trpm - chr2R 15277216 intron Trpm - chr2R_6_15275001 chr2R_15275001 RAL-409_95b 448 chr2R 15315717 15315735 chr2R 15315799 15315823 4 85 3.5 0.5 2.0 1.3 106 chr2R 15315717 exon mus210 + chr2R 15315770 exon mus210 + chr2R 15315823 exon mus210 + chr2R_4_15315001 chr2R_15315001 RAL-409_95b 449 chr2R 15351444 15351468 chr2R 15351541 15351578 6 104 3.0 2.5 2.8 1.6 134 chr2R 15351444 intron unc-5 + chr2R 15351511 intron unc-5 + chr2R 15351578 intron unc-5 + chr2R_6_15350001 chr2R_15350001 RAL-409_95b 450 chr2R 15606104 15606111 chr2R 15606180 15606208 4 90 3.5 4.0 3.8 0.8 104 chr2R 15606104 intergenic not near genes chr2R 15606156 intergenic not near genes chr2R 15606208 intergenic not near genes chr2R_4_15605001 chr2R_15605001 RAL-409_95b 451 chr2R 15655967 15656014 chr2R 15656067 15656107 8 87 1.0 2.5 1.8 2.9 140 chr2R 15655967 intron CG42524 + chr2R 15656037 intron CG42524 + chr2R 15656107 intron CG42524 + chr2R_8_15655001 chr2R_15655001 RAL-409_95b 452 chr2R 15675101 15675145 chr2R 15675198 15675223 10 86 3.0 4.0 3.5 2.2 122 chr2R 15675101 intron fus - chr2R 15675162 intron fus - chr2R 15675223 intron fus - chr2R_10_15675001 chr2R_15675001 RAL-409_95b 453 chr2R 15810381 15810403 chr2R 15810457 15810484 5 75 0.5 2.5 1.5 2.0 103 chr2R 15810381 intron,intron Zasp52 -,tun + chr2R 15810432 intron,intron Zasp52 -,tun + chr2R 15810484 intron,intron Zasp52 -,tun + chr2R_5_15810001 chr2R_15810001 RAL-409_95b 454 chr2R 15861239 15861269 chr2R 15861315 15861349 8 81 4.0 2.0 3.0 2.0 110 chr2R 15861239 intron Gpo-1 - chr2R 15861294 intron Gpo-1 - chr2R 15861349 intron Gpo-1 - chr2R_8_15860001 chr2R_15860001 RAL-409_95b 455 chr2R 16007843 16007873 chr2R 16007929 16007971 8 86 4.5 5.0 4.8 1.4 128 chr2R 16007843 intergenic CG8386 -,CG8389 + chr2R 16007907 intergenic CG8386 -,CG8389 + chr2R 16007971 intergenic CG8386 -,CG8389 + chr2R_8_16005001 chr2R_16005001 RAL-409_95b 456 chr2R 16419312 16419321 chr2R 16419651 16419674 6 343 2.0 3.5 2.8 1.6 362 chr2R 16419312 intron,5` UTR,5` UTR Sema-2b +,Menl-1 -,Menl-2 - chr2R 16419493 intron Sema-2b + chr2R 16419674 intron Sema-2b + chr2R_6_16415001 chr2R_16415001 RAL-409_95b 457 chr2R 16641691 16641697 chr2R 16641767 16641777 4 84 5.5 4.5 5.0 0.7 86 chr2R 16641691 5` UTR gprs + chr2R 16641734 intron gprs + chr2R 16641777 intron gprs + chr2R_4_16640001 chr2R_16640001 RAL-409_95b 458 chr2R 16668184 16668219 chr2R 16668266 16668308 7 82 1.0 2.5 1.8 2.5 124 chr2R 16668184 intergenic not near genes chr2R 16668246 intergenic not near genes chr2R 16668308 intergenic not near genes chr2R_7_16665001 chr2R_16665001 RAL-409_95b 459 chr2R 16775638 16775670 chr2R 16775924 16775935 9 279 2.0 1.0 1.5 3.6 297 chr2R 16775638 3` UTR Arp53D + chr2R 16775786 intergenic Arp53D + chr2R 16775935 intergenic Arp53D + chr2R_9_16775001 chr2R_16775001 RAL-409_95b 460 chr2R 16799036 16799056 chr2R 16799124 16799128 4 84 4.0 0.0 2.0 1.3 92 chr2R 16799036 intergenic not near genes chr2R 16799082 intergenic not near genes chr2R 16799128 intergenic not near genes chr2R_4_16795001 chr2R_16795001 RAL-409_95b 461 chr2R 16912699 16912719 chr2R 16912833 16912880 8 148 4.5 6.0 5.2 1.3 181 chr2R 16912699 intergenic not near genes chr2R 16912790 intergenic not near genes chr2R 16912880 intergenic not near genes chr2R_8_16910001 chr2R_16910001 RAL-409_95b 462 chr2R 17048602 17048653 chr2R 17048701 17048752 4 89 2.5 1.0 1.8 1.4 150 chr2R 17048602 3` UTR CG9642 + chr2R 17048677 3` UTR CG9642 + chr2R 17048752 3` UTR CG9642 + chr2R_4_17045001 chr2R_17045001 RAL-409_95b 463 chr2R 17221907 17221931 chr2R 17222098 17222143 6 200 2.0 1.5 1.8 2.1 236 chr2R 17221907 intron mbl + chr2R 17222025 intron mbl + chr2R 17222143 intron mbl + chr2R_6_17220001 chr2R_17220001 RAL-409_95b 464 chr2R 17227583 17227606 chr2R 17227719 17227736 4 140 1.0 1.0 1.0 2.0 153 chr2R 17227583 intron mbl + chr2R 17227660 intron mbl + chr2R 17227736 intron mbl + chr2R_4_17225001 chr2R_17225001 RAL-409_95b 465 chr2R 17236489 17236536 chr2R 17241713 17241734 copia 6 5216 4.5 4.0 4.2 1.2 5245 chr2R 17236489 intron mbl + chr2R 17239112 intron mbl + chr2R 17241734 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-409_95b 466 chr2R 17384509 17384546 chr2R 17384598 17384634 10 93 3.5 3.0 3.2 2.4 125 chr2R 17384509 intergenic not near genes chr2R 17384572 intergenic not near genes chr2R 17384634 intergenic not near genes chr2R_10_17380001 chr2R_17380001 RAL-409_95b 467 chr2R 17395294 17395316 chr2R 17395367 17395394 6 82 5.0 3.5 4.2 1.2 100 chr2R 17395294 intron Sip1 + chr2R 17395344 intron Sip1 + chr2R 17395394 intron Sip1 + chr2R_6_17395001 chr2R_17395001 RAL-409_95b 468 chr2R 17465111 17465145 chr2R 17465192 17465240 6 90 4.0 1.0 2.5 1.7 129 chr2R 17465111 3` UTR CG14478 + chr2R 17465176 3` UTR CG14478 + chr2R 17465240 3` UTR CG14478 + chr2R_6_17465001 chr2R_17465001 RAL-409_95b 469 chr2R 17485910 17485946 chr2R 17490676 17490726 F-element 5 4775 5.0 1.0 3.0 1.2 4816 chr2R 17485910 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490726 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-409_95b 470 chr2R 17500643 17500691 chr2R 17500739 17500764 4 84 0.0 2.5 1.2 1.8 121 chr2R 17500643 intergenic not near genes chr2R 17500704 intergenic not near genes chr2R 17500764 intergenic not near genes chr2R_4_17500001 chr2R_17500001 RAL-409_95b 471 chr2R 17512034 17512053 chr2R 17512137 17512175 4 106 5.0 1.0 3.0 1.0 141 chr2R 17512034 intron CG4847 + chr2R 17512104 intron CG4847 + chr2R 17512175 intron CG4847 + chr2R_4_17510001 chr2R_17510001 RAL-409_95b 472 chr2R 17708243 17708260 chr2R 17708445 17708448 4 199 2.5 1.5 2.0 1.3 205 chr2R 17708243 intron CG6424 - chr2R 17708346 intron CG6424 - chr2R 17708448 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-409_95b 473 chr2R 17784010 17784051 chr2R 17784269 17784312 pogo 7 252 3.0 2.5 2.8 1.8 302 chr2R 17784010 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784312 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-409_95b 474 chr2R 17795640 17795660 chr2R 17795741 17795746 4 96 3.0 0.0 1.5 1.6 106 chr2R 17795640 intron Dhit + chr2R 17795693 intron Dhit + chr2R 17795746 intron Dhit + chr2R_4_17795001 chr2R_17795001 RAL-409_95b 475 chr2R 17928249 17928289 chr2R 17928360 17928386 11 106 2.5 4.0 3.2 2.6 137 chr2R 17928249 intergenic not near genes chr2R 17928318 intergenic not near genes chr2R 17928386 intergenic not near genes chr2R_11_17925001 chr2R_17925001 RAL-409_95b 476 chr2R 17935284 17935328 chr2R 17935487 17935517 8 198 0.0 1.0 0.5 5.3 233 chr2R 17935284 intergenic not near genes chr2R 17935400 intergenic not near genes chr2R 17935517 intergenic not near genes chr2R_8_17935001 chr2R_17935001 RAL-409_95b 477 chr2R 18031680 18031693 chr2R 18031771 18031803 5 98 0.0 0.0 0.0 5.0 123 chr2R 18031680 intergenic not near genes chr2R 18031742 intergenic not near genes chr2R 18031803 intergenic not near genes chr2R_5_18030001 chr2R_18030001 RAL-409_95b 478 chr2R 18312360 18312390 chr2R 18312464 18312485 9 111 3.0 3.0 3.0 2.2 125 chr2R 18312360 intron sbb - chr2R 18312422 intron sbb - chr2R 18312485 intron sbb - chr2R_9_18310001 chr2R_18310001 RAL-409_95b 479 chr2R 18358403 18358419 chr2R 18372611 18372652 roo 4 14220 1.0 2.0 1.5 1.6 14249 chr2R 18358403 intergenic not near genes chr2R 18365528 intergenic not near genes chr2R 18372652 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-409_95b 480 chr2R 18376743 18376754 chr2R 18376830 18376838 5 84 0.5 5.0 2.8 1.3 95 chr2R 18376743 intergenic not near genes chr2R 18376790 intergenic not near genes chr2R 18376838 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-409_95b 481 chr2R 18393876 18393903 chr2R 18394037 18394084 7 171 2.5 2.0 2.2 2.2 208 chr2R 18393876 intron Idgf5 + chr2R 18393980 exon Idgf5 + chr2R 18394084 exon Idgf5 + chr2R_7_18390001 chr2R_18390001 RAL-409_95b 482 chr2R 18414017 18414055 chr2R 18414121 18414153 6 92 4.0 3.0 3.5 1.3 136 chr2R 18414017 intron Dp1 + chr2R 18414085 intron Dp1 + chr2R 18414153 intron Dp1 + chr2R_6_18410001 chr2R_18410001 RAL-409_95b 483 chr2R 18483038 18483055 chr2R 18483267 18483290 5 241 1.5 1.5 1.5 2.0 252 chr2R 18483038 intron CG30116 - chr2R 18483164 intron CG30116 - chr2R 18483290 intron CG30116 - chr2R_5_18480001 chr2R_18480001 RAL-409_95b 484 chr2R 18526578 18526614 chr2R 18526675 18526689 12 87 5.0 2.5 3.8 2.5 111 chr2R 18526578 intergenic CG43066 + chr2R 18526634 intergenic CG43066 + chr2R 18526689 intergenic CG43066 + chr2R_12_18525001 chr2R_18525001 RAL-409_95b 485 chr2R 18526617 18526624 chr2R 18526674 18526685 4 76 3.5 2.5 3.0 1.0 68 chr2R 18526617 intergenic CG43066 + chr2R 18526651 intergenic CG43066 + chr2R 18526685 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-409_95b 486 chr2R 18524102 18524113 chr2R 18526781 18526798 7 2675 18.5 15.5 17.0 0.4 2696 chr2R 18524102 intron CG43066 + chr2R 18525450 3` UTR CG43066 + chr2R 18526798 intergenic CG43066 + chr2R_7_18525001 chr2R_18525001 RAL-409_95b 487 chr2R 18575802 18575824 chr2R 18581989 18582017 3S18 8 6188 3.0 3.0 3.0 2.0 6215 chr2R 18575802 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-409_95b 488 chr2R 18590852 18590898 chr2R 18600022 18600070 roo 6 9163 0.0 1.5 0.8 3.3 9218 chr2R 18590852 intron GEFmeso - chr2R 18595461 intron GEFmeso - chr2R 18600070 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-409_95b 489 chr2R 18924267 18924300 chr2R 18924352 18924384 6 85 0.5 2.0 1.2 2.7 117 chr2R 18924267 intron sano + chr2R 18924326 intron sano + chr2R 18924384 intron sano + chr2R_6_18920001 chr2R_18920001 RAL-409_95b 490 chr2R 18931529 18931546 chr2R 18931608 18931634 5 87 3.0 3.0 3.0 1.2 105 chr2R 18931529 intron sano + chr2R 18931582 intron sano + chr2R 18931634 intron sano + chr2R_5_18930001 chr2R_18930001 RAL-409_95b 491 chr2R 18989029 18989043 chr2R 18989096 18989120 5 83 0.5 0.0 0.2 4.2 91 chr2R 18989029 intron tn + chr2R 18989074 intron tn + chr2R 18989120 intron tn + chr2R_5_18985001 chr2R_18985001 RAL-409_95b 492 chr2R 19015446 19015465 chr2R 19015525 19015535 6 88 3.0 2.0 2.5 1.7 89 chr2R 19015446 intergenic not near genes chr2R 19015490 intergenic not near genes chr2R 19015535 intergenic not near genes chr2R_6_19015001 chr2R_19015001 RAL-409_95b 493 chr2R 19247441 19247454 chr2R 19247571 19247583 4 130 6.0 0.0 3.0 1.0 142 chr2R 19247441 intergenic not near genes chr2R 19247512 intergenic not near genes chr2R 19247583 intergenic not near genes chr2R_4_19245001 chr2R_19245001 RAL-409_95b 494 chr2R 19251338 19251382 chr2R 19251454 19251474 10 102 2.0 5.5 3.8 2.1 136 chr2R 19251338 exon CG33454 - chr2R 19251406 exon CG33454 - chr2R 19251474 exon CG33454 - chr2R_10_19250001 chr2R_19250001 RAL-409_95b 495 chr2R 19253077 19253127 chr2R 19253185 19253216 5 96 2.0 1.0 1.5 2.0 139 chr2R 19253077 intron CG33453 - chr2R 19253146 exon CG33453 - chr2R 19253216 5` UTR CG33453 - chr2R_5_19250001 chr2R_19250001 RAL-409_95b 496 chr2R 19284436 19284473 chr2R 19284519 19284542 6 83 3.0 1.0 2.0 2.0 106 chr2R 19284436 intergenic CG10476 -,CG11906 - chr2R 19284489 intergenic CG10476 - chr2R 19284542 intergenic CG10476 - chr2R_6_19280001 chr2R_19280001 RAL-409_95b 497 chr2R 19359042 19359071 chr2R 19359129 19359172 8 91 0.5 2.5 1.5 3.2 130 chr2R 19359042 intron CG11961 + chr2R 19359107 intron CG11961 + chr2R 19359172 intron CG11961 + chr2R_8_19355001 chr2R_19355001 RAL-409_95b 498 chr2R 19514416 19514426 chr2R 19514497 19514507 5 89 5.0 4.5 4.8 0.9 91 chr2R 19514416 intergenic not near genes chr2R 19514462 intergenic not near genes chr2R 19514507 intergenic not near genes chr2R_5_19510001 chr2R_19510001 RAL-409_95b 499 chr2R 19535574 19535596 chr2R 19535660 19535667 8 87 3.0 1.5 2.2 2.5 93 chr2R 19535574 intron sm - chr2R 19535620 intron sm - chr2R 19535667 intron sm - chr2R_8_19535001 chr2R_19535001 RAL-409_95b 500 chr2R 19603974 19604003 chr2R 19604059 19604072 5 90 1.0 2.0 1.5 2.0 98 chr2R 19603974 intron sm - chr2R 19604023 intron sm - chr2R 19604072 intron sm - chr2R_5_19600001 chr2R_19600001 RAL-409_95b 501 chr2R 19776598 19776628 chr2R 19779922 19779951 jockey 11 3327 1.5 6.0 3.8 2.3 3353 chr2R 19776598 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-409_95b 502 chr2R 19914836 19914873 chr2R 19922260 19922298 mdg1 4 7423 2.5 1.0 1.8 1.4 7462 chr2R 19914836 intergenic not near genes chr2R 19918567 intergenic not near genes chr2R 19922298 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-409_95b 503 chr2R 20271824 20271867 chr2R 20271930 20271947 5 92 4.5 2.5 3.5 1.1 123 chr2R 20271824 3` UTR CG10444 - chr2R 20271886 3` UTR CG10444 - chr2R 20271947 3` UTR CG10444 - chr2R_5_20270001 chr2R_20270001 RAL-409_95b 504 chr2R 20301832 20301860 chr2R 20301950 20301987 4 119 0.0 1.5 0.8 2.2 155 chr2R 20301832 intergenic CR44640 + chr2R 20301910 intergenic CR44640 + chr2R 20301987 intergenic CR44640 + chr2R_4_20300001 chr2R_20300001 RAL-409_95b 505 chr2R 20321235 20321263 chr2R 20321325 20321351 9 96 2.5 2.0 2.2 2.8 116 chr2R 20321235 intron CG8920 + chr2R 20321293 intron CG8920 + chr2R 20321351 intron CG8920 + chr2R_9_20320001 chr2R_20320001 RAL-409_95b 506 chr2R 20326759 20326792 chr2R 20326836 20326889 10 86 1.0 3.0 2.0 3.3 130 chr2R 20326759 5` UTR MED8 - chr2R 20326824 intergenic MED8 -,CG8929 + chr2R 20326889 intergenic MED8 -,CG8929 + chr2R_10_20325001 chr2R_20325001 RAL-409_95b 507 chr2R 20437813 20437835 chr2R 20437892 20437903 5 87 4.0 3.5 3.8 1.0 90 chr2R 20437813 intron CG12484 + chr2R 20437858 intron CG12484 + chr2R 20437903 intron CG12484 + chr2R_5_20435001 chr2R_20435001 RAL-409_95b 508 chr2R 20454781 20454816 chr2R 20454882 20454899 6 86 1.5 1.5 1.5 2.4 118 chr2R 20454781 intron CG12484 + chr2R 20454840 intron CG12484 + chr2R 20454899 intron CG12484 + chr2R_6_20450001 chr2R_20450001 RAL-409_95b 509 chr2R 20468853 20468879 chr2R 20468944 20468952 5 85 4.0 1.0 2.5 1.4 99 chr2R 20468853 exon CG12484 + chr2R 20468902 intron CG12484 + chr2R 20468952 intron CG12484 + chr2R_5_20465001 chr2R_20465001 RAL-409_95b 510 chr2R 20504960 20504976 chr2R 20505047 20505076 4 92 1.5 1.0 1.2 1.8 116 chr2R 20504960 3` UTR Obp57b + chr2R 20505018 3` UTR Obp57b + chr2R 20505076 3` UTR Obp57b + chr2R_4_20505001 chr2R_20505001 RAL-409_95b 511 chr2R 20577071 20577120 chr2R 20577174 20577231 4 98 0.0 0.5 0.2 3.3 160 chr2R 20577071 intron qsm - chr2R 20577151 intron qsm - chr2R 20577231 intron qsm - chr2R_4_20575001 chr2R_20575001 RAL-409_95b 512 chr2R 20690761 20690790 chr2R 20690833 20690861 4 69 2.5 3.0 2.8 1.1 100 chr2R 20690761 intergenic not near genes chr2R 20690811 intergenic not near genes chr2R 20690861 intergenic not near genes chr2R_4_20690001 chr2R_20690001 RAL-409_95b 513 chr2R 20739425 20739470 chr2R 20744213 20744238 F-element 4 4778 1.0 3.0 2.0 1.3 4813 chr2R 20739425 intron dpr + chr2R 20741832 intron dpr + chr2R 20744238 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-409_95b 514 chr2R 20783308 20783333 chr2R 20788084 20788097 F-element 7 4777 1.5 2.0 1.8 2.5 4789 chr2R 20783308 intergenic not near genes chr2R 20785702 intergenic not near genes chr2R 20788097 intergenic CG43666 - chr2R_7_20785001 chr2R_20785001 RAL-409_95b 515 chr2R 21040849 21040893 chr2R 21040934 21040937 10 83 2.5 2.0 2.2 3.1 88 chr2R 21040849 intergenic not near genes chr2R 21040893 intergenic not near genes chr2R 21040937 intergenic not near genes chr2R_10_21040001 chr2R_21040001 RAL-409_95b 516 chr2R 21408355 21408403 chr2R 21408467 21408499 4 104 1.0 0.5 0.8 2.2 144 chr2R 21408355 intron Sdc - chr2R 21408427 intron Sdc - chr2R 21408499 intron Sdc - chr2R_4_21405001 chr2R_21405001 RAL-409_95b 517 chr2R 21643925 21643949 chr2R 21644003 21644037 6 89 2.0 1.5 1.8 2.1 112 chr2R 21643925 intergenic not near genes chr2R 21643981 intergenic not near genes chr2R 21644037 intergenic not near genes chr2R_6_21640001 chr2R_21640001 RAL-409_95b 518 chr2R 21671537 21671574 chr2R 21671618 21671625 5 80 0.5 3.0 1.8 1.8 88 chr2R 21671537 3` UTR NC2alpha + chr2R 21671581 3` UTR NC2alpha + chr2R 21671625 intergenic NC2alpha +,CG15676 + chr2R_5_21670001 chr2R_21670001 RAL-409_95b 519 chr2R 21721590 21721603 chr2R 21721680 21721706 4 100 1.5 4.5 3.0 1.0 116 chr2R 21721590 intron LBR + chr2R 21721648 intron LBR + chr2R 21721706 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-409_95b 520 chr2R 21730267 21730284 chr2R 21730456 21730495 5 199 2.5 5.0 3.8 1.0 228 chr2R 21730267 intergenic not near genes chr2R 21730381 intergenic not near genes chr2R 21730495 intergenic not near genes chr2R_5_21730001 chr2R_21730001 RAL-409_95b 521 chr2R 21753063 21753117 chr2R 21753567 21753603 roo 6 497 4.5 5.0 4.8 1.0 540 chr2R 21753063 intergenic not near genes chr2R 21753333 intergenic not near genes chr2R 21753603 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-409_95b 522 chr2R 21771429 21771472 chr2R 21771678 21771700 8 240 2.5 2.5 2.5 2.3 271 chr2R 21771429 intergenic not near genes chr2R 21771564 intergenic not near genes chr2R 21771700 intergenic not near genes chr2R_8_21770001 chr2R_21770001 RAL-409_95b 523 chr2R 21789598 21789635 chr2R 21789725 21789755 8 124 2.5 2.0 2.2 2.5 157 chr2R 21789598 intergenic lox2 - chr2R 21789676 3` UTR lox2 - chr2R 21789755 3` UTR lox2 - chr2R_8_21785001 chr2R_21785001 RAL-409_95b 524 chr2R 21809528 21809556 chr2R 21817764 21817798 roo 5 8252 3.5 4.5 4.0 1.0 8270 chr2R 21809528 intergenic not near genes chr2R 21813663 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-409_95b 525 chr2R 21830222 21830241 chr2R 21830304 21830323 4 85 1.0 3.0 2.0 1.3 101 chr2R 21830222 intron CG13492 - chr2R 21830272 intron CG13492 - chr2R 21830323 intron CG13492 - chr2R_4_21830001 chr2R_21830001 RAL-409_95b 526 chr2R 21857350 21857369 chr2R 21857437 21857474 7 99 6.0 1.5 3.8 1.5 124 chr2R 21857350 intergenic not near genes chr2R 21857412 intergenic not near genes chr2R 21857474 intergenic not near genes chr2R_7_21855001 chr2R_21855001 RAL-409_95b 527 chr2R 21880585 21880638 chr2R 21880703 21880748 8 116 3.0 4.5 3.8 1.7 163 chr2R 21880585 intron Fili + chr2R 21880666 intron Fili + chr2R 21880748 intron Fili + chr2R_8_21880001 chr2R_21880001 RAL-409_95b 528 chr2R 22037783 22037797 chr2R 22037869 22037877 4 89 1.5 0.5 1.0 2.0 94 chr2R 22037783 intron CG34370 - chr2R 22037830 intron CG34370 - chr2R 22037877 intron CG34370 - chr2R_4_22035001 chr2R_22035001 RAL-409_95b 529 chr2R 22135424 22135454 chr2R 22135553 22135564 5 118 4.0 3.0 3.5 1.1 140 chr2R 22135424 intergenic not near genes chr2R 22135494 intergenic not near genes chr2R 22135564 intergenic not near genes chr2R_5_22135001 chr2R_22135001 RAL-409_95b 530 chr2R 22159186 22159217 chr2R 22159289 22159326 7 96 4.0 2.5 3.2 1.7 140 chr2R 22159186 intron a + chr2R 22159256 intron a + chr2R 22159326 intron a + chr2R_7_22155001 chr2R_22155001 RAL-409_95b 531 chr2R 22247533 22247554 chr2R 22247629 22247629 5 91 5.0 8.5 6.8 0.6 96 chr2R 22247533 intron dve + chr2R 22247581 intron dve + chr2R 22247629 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-409_95b 532 chr2R 22465305 22465340 chr2R 22465520 22465549 BS 10 206 2.5 0.5 1.5 4.0 244 chr2R 22465305 intron CG10384 + chr2R 22465427 intron CG10384 + chr2R 22465549 intron CG10384 + chr2R_10_22465001 chr2R_22465001 RAL-409_95b 533 chr2R 22545610 22545646 chr2R 22545709 22545723 4 94 2.5 3.0 2.8 1.1 113 chr2R 22545610 intron px - chr2R 22545666 intron px - chr2R 22545723 intron px - chr2R_4_22545001 chr2R_22545001 RAL-409_95b 534 chr2R 22774949 22775000 chr2R 22775388 22775420 jockey 9 430 3.5 4.0 3.8 1.9 471 chr2R 22774949 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_9_22775001 chr2R_22775001 RAL-409_95b 535 chr2R 22905019 22905057 chr2R 22905174 22905205 5 153 4.5 0.0 2.2 1.6 186 chr2R 22905019 intron nahoda + chr2R 22905112 intron nahoda + chr2R 22905205 intron nahoda + chr2R_5_22905001 chr2R_22905001 RAL-409_95b 536 chr2R 22949188 22949204 chr2R 22949483 22949492 5 297 3.0 2.0 2.5 1.4 304 chr2R 22949188 intergenic not near genes chr2R 22949340 intergenic not near genes chr2R 22949492 intergenic not near genes chr2R_5_22945001 chr2R_22945001 RAL-409_95b 537 chr2R 23037260 23037285 chr2R 23037354 23037370 4 88 4.0 1.5 2.8 1.1 110 chr2R 23037260 intron,intron twi +,CG42741 - chr2R 23037315 intron,intron twi +,CG42741 - chr2R 23037370 intron,intron twi +,CG42741 - chr2R_4_23035001 chr2R_23035001 RAL-409_95b 538 chr2R 23045832 23045851 chr2R 23045912 23045956 4 94 0.0 1.0 0.5 2.7 124 chr2R 23045832 intron twi + chr2R 23045894 intron twi + chr2R 23045956 intron twi + chr2R_4_23045001 chr2R_23045001 RAL-409_95b 539 chr2R 23061768 23061786 chr2R 23061844 23061860 7 81 4.0 6.5 5.2 1.1 92 chr2R 23061768 3` UTR l(2)06496 - chr2R 23061814 3` UTR l(2)06496 - chr2R 23061860 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-409_95b 540 chr2R 23175035 23175061 chr2R 23175115 23175136 8 80 3.5 2.5 3.0 2.0 101 chr2R 23175035 intron CG34371 - chr2R 23175086 intron CG34371 - chr2R 23175136 intron CG34371 - chr2R_8_23175001 chr2R_23175001 RAL-409_95b 541 chr2R 23188562 23188583 chr2R 23188641 23188681 6 86 1.5 3.0 2.2 1.9 119 chr2R 23188562 intron CG34371 - chr2R 23188622 intron CG34371 - chr2R 23188681 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-409_95b 542 chr2R 23487430 23487468 chr2R 23487532 23487550 6 92 4.0 2.0 3.0 1.5 120 chr2R 23487430 intron CG43795 + chr2R 23487490 intron CG43795 + chr2R 23487550 intron CG43795 + chr2R_6_23485001 chr2R_23485001 RAL-409_95b 543 chr2R 23607020 23607189 chr2R 23607118 23607281 16 95 5.5 4.0 4.8 2.8 261 chr2R 23607020 intron CG17664 - chr2R 23607150 intron CG17664 - chr2R 23607281 intron CG17664 - chr2R_16_23605001 chr2R_23605001 RAL-409_95b 544 chr2R 23635705 23635720 chr2R 23635778 23635783 4 78 3.0 1.5 2.2 1.2 78 chr2R 23635705 intron retn + chr2R 23635744 intron retn + chr2R 23635783 intron retn + chr2R_4_23635001 chr2R_23635001 RAL-409_95b 545 chr2R 23784473 23784507 chr2R 23784550 23784587 9 78 2.5 3.0 2.8 2.4 114 chr2R 23784473 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784587 intron CG9850 - chr2R_9_23780001 chr2R_23780001 RAL-409_95b 546 chr2R 23824145 23824168 chr2R 23824256 23824262 5 103 3.5 2.5 3.0 1.2 117 chr2R 23824145 intron,intron CG5549 +,CG4763 - chr2R 23824204 intron,intron CG5549 +,CG4763 - chr2R 23824262 intron,intron CG5549 +,CG4763 - chr2R_5_23820001 chr2R_23820001 RAL-409_95b 547 chr2R 23906833 23906861 chr2R 23906918 23906941 8 87 5.5 4.0 4.8 1.4 108 chr2R 23906833 intron Nap1 - chr2R 23906887 intron Nap1 - chr2R 23906941 intron Nap1 - chr2R_8_23905001 chr2R_23905001 RAL-409_95b 548 chr2R 23914290 23914332 chr2R 23921930 23921950 412 5 7637 3.5 7.5 5.5 0.8 7660 chr2R 23914290 exon kcc + chr2R 23918120 intron kcc + chr2R 23921950 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-409_95b 549 chr2R 23926838 23926864 chr2R 23926918 23926953 5 85 0.5 2.5 1.5 2.0 115 chr2R 23926838 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926896 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926953 3` UTR Ca-P60A - chr2R_5_23925001 chr2R_23925001 RAL-409_95b 550 chr2R 24031374 24031409 chr2R 24031463 24031496 12 89 3.5 4.0 3.8 2.5 122 chr2R 24031374 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031496 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-409_95b 551 chr2R 24077931 24077957 chr2R 24078004 24078053 12 84 4.5 3.5 4.0 2.4 122 chr2R 24077931 3` UTR Mlp60A + chr2R 24077992 3` UTR Mlp60A + chr2R 24078053 3` UTR Mlp60A + chr2R_12_24075001 chr2R_24075001 RAL-409_95b 552 chr2R 24087200 24087215 chr2R 24087319 24087349 5 129 4.5 5.0 4.8 0.9 149 chr2R 24087200 intron snama + chr2R 24087274 intron snama + chr2R 24087349 intron snama + chr2R_5_24085001 chr2R_24085001 RAL-409_95b 553 chr2R 24138288 24138326 chr2R 24138467 24138473 5 168 6.0 3.5 4.8 0.9 185 chr2R 24138288 intergenic CG4065 -,CR44826 + chr2R 24138380 intergenic CR44826 +,CG4065 - chr2R 24138473 intergenic CR44826 +,CG4065 - chr2R_5_24135001 chr2R_24135001 RAL-409_95b 554 chr2R 24177217 24177256 chr2R 24184719 24184742 412 5 7498 4.0 3.0 3.5 1.1 7525 chr2R 24177217 3` UTR Nop60B + chr2R 24180980 intron Nop60B + chr2R 24184742 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-409_95b 555 chr2R 24224466 24224503 chr2R 24224865 24224894 5 389 2.5 1.0 1.8 1.8 428 chr2R 24224466 intron CG30419 - chr2R 24224680 intron CG30419 - chr2R 24224894 intron CG30419 - chr2R_5_24220001 chr2R_24220001 RAL-409_95b 556 chr2R 24352573 24352604 chr2R 24352650 24352679 5 70 1.0 0.5 0.8 2.8 106 chr2R 24352573 intron,intron bs +,CR44811 - chr2R 24352626 intron,intron bs +,CR44811 - chr2R 24352679 intron,intron bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-409_95b 557 chr2R 24353409 24353455 chr2R 24361791 24361820 roo 9 8368 4.5 6.5 5.5 1.4 8411 chr2R 24353409 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361820 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-409_95b 558 chr2R 24590109 24590136 chr2R 24590213 24590226 5 93 4.0 1.0 2.5 1.4 117 chr2R 24590109 intron pio + chr2R 24590168 intron pio + chr2R 24590226 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-409_95b 559 chr2R 24883882 24883911 chr2R 24883985 24883991 8 87 3.5 8.0 5.8 1.2 109 chr2R 24883882 intron NKAIN + chr2R 24883936 intron NKAIN + chr2R 24883991 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-409_95b 560 chr2R 25018335 25018373 chr2R 25018439 25018447 12 103 1.0 5.5 3.2 2.9 112 chr2R 25018335 intron uzip + chr2R 25018391 intron uzip + chr2R 25018447 intron uzip + chr2R_12_25015001 chr2R_25015001 RAL-409_95b 561 chr2R 25022637 25022673 chr2R 25022726 25022757 6 89 3.0 3.0 3.0 1.5 120 chr2R 25022637 intron uzip + chr2R 25022697 intron uzip + chr2R 25022757 intron uzip + chr2R_6_25020001 chr2R_25020001 RAL-409_95b 562 chr2R 25061339 25061369 chr2R 25061417 25061430 9 77 2.5 2.0 2.2 2.8 91 chr2R 25061339 intergenic not near genes chr2R 25061384 intergenic not near genes chr2R 25061430 intergenic not near genes chr2R_9_25060001 chr2R_25060001 RAL-409_95b 563 chr2R 25081595 25081616 chr2R 25082701 25082729 4 1104 3.0 2.0 2.5 1.1 1134 chr2R 25081595 intron gol - chr2R 25082162 intron gol - chr2R 25082729 intron gol - chr2R_4_25080001 chr2R_25080001 RAL-409_95b 564 chr2R 25101268 25101307 chr2R 25101390 25101420 9 111 2.5 6.5 4.5 1.6 152 chr2R 25101268 intron lov - chr2R 25101344 intron lov - chr2R 25101420 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-409_95b 565 chr2R 25234767 25234792 chr2R 25234844 25234892 6 90 0.5 1.0 0.8 3.3 125 chr2R 25234767 intron CG9380 - chr2R 25234830 intron CG9380 - chr2R 25234892 intron CG9380 - chr2R_6_25230001 chr2R_25230001 RAL-409_95b 566 chr2R 25239537 25239545 chr2R 25240101 25240126 9 580 0.5 2.5 1.5 3.6 589 chr2R 25239537 intron CG9380 - chr2R 25239832 intron CG9380 - chr2R 25240126 intron CG9380 - chr2R_9_25235001 chr2R_25235001 RAL-409_95b 567 chr2R 25242446 25242449 chr2R 25242504 25242527 4 73 1.5 1.0 1.2 1.8 81 chr2R 25242446 intron CG9380 - chr2R 25242486 intron CG9380 - chr2R 25242527 intron CG9380 - chr2R_4_25240001 chr2R_25240001 RAL-409_95b 568 chr3L 68975 69016 chr3L 69082 69109 7 98 2.0 2.0 2.0 2.3 134 chr3L 68975 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69109 intergenic CR44510 +,Lsp1gamma + chr3L_7_65001 chr3L_65001 RAL-409_95b 569 chr3L 93791 93819 chr3L 93869 93896 6 73 2.5 5.5 4.0 1.2 105 chr3L 93791 intergenic not near genes chr3L 93844 intergenic not near genes chr3L 93896 intergenic not near genes chr3L_6_90001 chr3L_90001 RAL-409_95b 570 chr3L 105995 106023 chr3L 106138 106165 7 144 3.0 8.5 5.8 1.0 170 chr3L 105995 intergenic not near genes chr3L 106080 intergenic not near genes chr3L 106165 intergenic not near genes chr3L_7_105001 chr3L_105001 RAL-409_95b 571 chr3L 110198 110227 chr3L 119376 119396 roo 8 9174 2.0 1.0 1.5 3.2 9198 chr3L 110198 intergenic not near genes chr3L 114797 intergenic not near genes chr3L 119396 intergenic not near genes chr3L_8_110001 chr3L_110001 RAL-409_95b 572 chr3L 164914 164940 chr3L 165016 165055 6 106 3.5 1.5 2.5 1.7 141 chr3L 164914 intron p130CAS + chr3L 164984 intron p130CAS + chr3L 165055 intron p130CAS + chr3L_6_160001 chr3L_160001 RAL-409_95b 573 chr3L 165668 165710 chr3L 165820 165860 19 143 3.5 3.0 3.2 4.5 192 chr3L 165668 intron p130CAS + chr3L 165764 intron p130CAS + chr3L 165860 intron p130CAS + chr3L_19_165001 chr3L_165001 RAL-409_95b 574 chr3L 338798 338840 chr3L 338902 338953 9 97 4.0 5.5 4.8 1.6 155 chr3L 338798 intron,intron Ptpmeg +,mthl10 - chr3L 338876 intron,intron Ptpmeg +,mthl10 - chr3L 338953 intron,intron Ptpmeg +,mthl10 - chr3L_9_335001 chr3L_335001 RAL-409_95b 575 chr3L 402699 402717 chr3L 409742 409767 297 14 7053 1.0 4.0 2.5 4.0 7068 chr3L 402699 intergenic not near genes chr3L 406233 intergenic not near genes chr3L 409767 intergenic not near genes chr3L_14_405001 chr3L_405001 RAL-409_95b 576 chr3L 494600 494620 chr3L 494678 494699 7 87 3.5 0.0 1.8 2.5 99 chr3L 494600 intron klar - chr3L 494650 intron klar - chr3L 494699 intron klar - chr3L_7_490001 chr3L_490001 RAL-409_95b 577 chr3L 514258 514303 chr3L 514355 514379 9 80 4.0 6.5 5.2 1.5 121 chr3L 514258 intron klar - chr3L 514318 intron klar - chr3L 514379 intron klar - chr3L_9_510001 chr3L_510001 RAL-409_95b 578 chr3L 563978 564000 chr3L 564150 564186 7 180 4.0 3.0 3.5 1.6 208 chr3L 563978 intron hipk + chr3L 564082 intron hipk + chr3L 564186 intron hipk + chr3L_7_560001 chr3L_560001 RAL-409_95b 579 chr3L 651386 651420 chr3L 651475 651528 9 96 2.5 2.5 2.5 2.6 142 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651457 intergenic CG3402 -,Gale + chr3L 651528 intergenic CG3402 -,Gale + chr3L_9_650001 chr3L_650001 RAL-409_95b 580 chr3L 705896 705932 chr3L 705997 706021 6 105 2.0 3.5 2.8 1.6 125 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705958 3` UTR CG13895 - chr3L 706021 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-409_95b 581 chr3L 774835 774851 chr3L 774917 774928 4 88 2.0 1.5 1.8 1.4 93 chr3L 774835 intergenic not near genes chr3L 774882 intergenic not near genes chr3L 774928 intergenic not near genes chr3L_4_770001 chr3L_770001 RAL-409_95b 582 chr3L 854162 854205 chr3L 854260 854288 7 84 1.0 2.5 1.8 2.5 126 chr3L 854162 intron dpr20 - chr3L 854225 intron dpr20 - chr3L 854288 intron dpr20 - chr3L_7_850001 chr3L_850001 RAL-409_95b 583 chr3L 875646 875676 chr3L 875750 875757 8 103 5.5 3.5 4.5 1.5 111 chr3L 875646 intron CG32479 + chr3L 875702 intron CG32479 + chr3L 875757 intron CG32479 + chr3L_8_875001 chr3L_875001 RAL-409_95b 584 chr3L 916155 916197 chr3L 916295 916315 7 126 1.5 4.0 2.8 1.8 160 chr3L 916155 intron Glut1 + chr3L 916235 intron Glut1 + chr3L 916315 intron Glut1 + chr3L_7_915001 chr3L_915001 RAL-409_95b 585 chr3L 925182 925200 chr3L 932604 932645 mdg1 7 7427 3.5 1.0 2.2 2.2 7463 chr3L 925182 intron Glut1 + chr3L 928914 intron Glut1 + chr3L 932645 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-409_95b 586 chr3L 939770 939800 chr3L 940891 940919 jockey 10 1128 5.0 3.5 4.2 1.9 1149 chr3L 939770 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940919 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-409_95b 587 chr3L 1028810 1028846 chr3L 1028902 1028927 8 90 3.5 2.0 2.8 2.1 117 chr3L 1028810 intron trio - chr3L 1028868 intron trio - chr3L 1028927 intron trio - chr3L_8_1025001 chr3L_1025001 RAL-409_95b 588 chr3L 1031576 1031607 chr3L 1031651 1031674 5 73 3.0 4.5 3.8 1.0 98 chr3L 1031576 intron trio - chr3L 1031625 intron trio - chr3L 1031674 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-409_95b 589 chr3L 1154128 1154163 chr3L 1163278 1163305 roo 8 9152 3.0 2.5 2.8 2.1 9177 chr3L 1154128 intron bab2 - chr3L 1158716 intron bab2 - chr3L 1163305 intron bab2 - chr3L_8_1155001 chr3L_1155001 RAL-409_95b 590 chr3L 1219592 1219612 chr3L 1227329 1227362 412 4 7741 3.5 3.5 3.5 0.9 7770 chr3L 1219592 intron mwh + chr3L 1223477 intron mwh + chr3L 1227362 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-409_95b 591 chr3L 1310981 1310995 chr3L 1315845 1315860 5 4864 14.5 33.5 24.0 0.2 4879 chr3L 1310981 exon CG2469 + chr3L 1313420 intergenic CG9186 -,CG9153 + chr3L 1315860 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-409_95b 592 chr3L 1374432 1374440 chr3L 1374509 1374517 4 78 8.0 5.0 6.5 0.5 85 chr3L 1374432 intron,intron Ptp61F -,ru + chr3L 1374474 intron,intron Ptp61F -,ru + chr3L 1374517 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-409_95b 593 chr3L 1505999 1506026 chr3L 1513595 1513623 17.6 7 7602 6.0 3.5 4.8 1.2 7624 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509811 intron,intron Psa +,cue - chr3L 1513623 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-409_95b 594 chr3L 1639232 1639239 chr3L 1639395 1639418 4 176 1.5 1.0 1.2 1.8 186 chr3L 1639232 5` UTR metl - chr3L 1639325 intergenic metl -,Bgb + chr3L 1639418 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-409_95b 595 chr3L 1674338 1674350 chr3L 1674412 1674430 5 82 2.5 2.5 2.5 1.4 92 chr3L 1674338 intergenic CG7991 + chr3L 1674384 intergenic CG7991 + chr3L 1674430 intergenic CG7991 + chr3L_5_1670001 chr3L_1670001 RAL-409_95b 596 chr3L 1740834 1740886 chr3L 1741099 1741126 pogo 7 251 3.5 1.5 2.5 2.0 292 chr3L 1740834 intron Gk + chr3L 1740980 intron Gk + chr3L 1741126 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-409_95b 597 chr3L 1841479 1841506 chr3L 1841692 1841709 4 209 2.0 5.5 3.8 0.8 230 chr3L 1841479 intron Cpr62Bc - chr3L 1841594 intron Cpr62Bc - chr3L 1841709 intron Cpr62Bc - chr3L_4_1840001 chr3L_1840001 RAL-409_95b 598 chr3L 2016073 2016106 chr3L 2016205 2016220 5 129 4.0 0.5 2.2 1.6 147 chr3L 2016073 intergenic not near genes chr3L 2016146 intergenic not near genes chr3L 2016220 intergenic not near genes chr3L_5_2015001 chr3L_2015001 RAL-409_95b 599 chr3L 2139185 2139227 chr3L 2139286 2139309 8 87 1.0 3.5 2.2 2.5 124 chr3L 2139185 intron zormin - chr3L 2139247 intron zormin - chr3L 2139309 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-409_95b 600 chr3L 2168775 2168807 chr3L 2168865 2168901 8 93 2.5 0.5 1.5 3.2 126 chr3L 2168775 exon CG15879 - chr3L 2168838 intron CG15879 - chr3L 2168901 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-409_95b 601 chr3L 2308008 2308031 chr3L 2308112 2308156 4 114 3.0 2.0 2.5 1.1 148 chr3L 2308008 intergenic not near genes chr3L 2308082 intergenic not near genes chr3L 2308156 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-409_95b 602 chr3L 2414454 2414486 chr3L 2414628 2414639 7 163 2.5 1.5 2.0 2.3 185 chr3L 2414454 intron CG45186 + chr3L 2414546 intron CG45186 + chr3L 2414639 intron CG45186 + chr3L_7_2410001 chr3L_2410001 RAL-409_95b 603 chr3L 2447483 2447531 chr3L 2456659 2456682 roo 7 9158 4.5 3.0 3.8 1.5 9199 chr3L 2447483 intron CG45186 + chr3L 2452082 intron CG45186 + chr3L 2456682 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-409_95b 604 chr3L 2482918 2482962 chr3L 2483029 2483051 6 100 3.0 2.0 2.5 1.7 133 chr3L 2482918 intron CG45186 + chr3L 2482984 intron CG45186 + chr3L 2483051 intron CG45186 + chr3L_6_2480001 chr3L_2480001 RAL-409_95b 605 chr3L 2533654 2533684 chr3L 2533734 2533759 8 77 2.5 2.5 2.5 2.3 105 chr3L 2533654 intron Spn - chr3L 2533706 intron Spn - chr3L 2533759 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-409_95b 606 chr3L 2561512 2561561 chr3L 2561607 2561626 9 85 3.0 2.5 2.8 2.4 114 chr3L 2561512 intron msn - chr3L 2561569 intron msn - chr3L 2561626 intron msn - chr3L_9_2560001 chr3L_2560001 RAL-409_95b 607 chr3L 2683932 2683967 chr3L 2684023 2684054 5 85 2.0 1.5 1.8 1.8 122 chr3L 2683932 intron Fife - chr3L 2683993 intron Fife - chr3L 2684054 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-409_95b 608 chr3L 2719542 2719558 chr3L 2719648 2719680 5 109 2.5 1.5 2.0 1.7 138 chr3L 2719542 3` UTR Mrtf - chr3L 2719611 3` UTR Mrtf - chr3L 2719680 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-409_95b 609 chr3L 2751449 2751459 chr3L 2755744 2755764 F-element 4 4302 1.0 6.0 3.5 0.9 4315 chr3L 2751449 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755764 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-409_95b 610 chr3L 2854494 2854503 chr3L 2854555 2854586 5 70 2.0 1.5 1.8 1.8 92 chr3L 2854494 intron CG43444 - chr3L 2854540 intron CG43444 - chr3L 2854586 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-409_95b 611 chr3L 2873584 2873607 chr3L 2873669 2873706 7 81 1.5 2.0 1.8 2.5 122 chr3L 2873584 intron CG43444 - chr3L 2873645 intron CG43444 - chr3L 2873706 intron CG43444 - chr3L_7_2870001 chr3L_2870001 RAL-409_95b 612 chr3L 2882129 2882140 chr3L 2882209 2882236 5 88 1.5 3.5 2.5 1.4 107 chr3L 2882129 intergenic not near genes chr3L 2882182 intergenic not near genes chr3L 2882236 intergenic not near genes chr3L_5_2880001 chr3L_2880001 RAL-409_95b 613 chr3L 3102814 3102846 chr3L 3102920 3102932 5 95 2.5 2.0 2.2 1.6 118 chr3L 3102814 intron Cht7 - chr3L 3102873 intron Cht7 - chr3L 3102932 intron Cht7 - chr3L_5_3100001 chr3L_3100001 RAL-409_95b 614 chr3L 3284438 3284469 chr3L 3284521 3284572 5 86 3.0 4.5 3.8 1.0 134 chr3L 3284438 intron CG12017 + chr3L 3284505 intron CG12017 + chr3L 3284572 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-409_95b 615 chr3L 3475062 3475112 chr3L 3475525 3475561 jockey 7 455 1.0 4.5 2.8 1.8 499 chr3L 3475062 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475561 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-409_95b 616 chr3L 3627227 3627263 chr3L 3627341 3627368 4 112 1.0 1.0 1.0 2.0 141 chr3L 3627227 intron dar1 + chr3L 3627298 intron dar1 + chr3L 3627368 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-409_95b 617 chr3L 3798048 3798072 chr3L 3798134 3798173 5 95 2.5 3.5 3.0 1.2 125 chr3L 3798048 intron CG32264 - chr3L 3798110 intron CG32264 - chr3L 3798173 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-409_95b 618 chr3L 3802965 3802975 chr3L 3803031 3803051 5 76 4.5 3.5 4.0 1.0 86 chr3L 3802965 intron CG32264 - chr3L 3803008 intron CG32264 - chr3L 3803051 intron CG32264 - chr3L_5_3800001 chr3L_3800001 RAL-409_95b 619 chr3L 3815047 3815081 chr3L 3815147 3815177 9 91 6.0 4.5 5.2 1.5 130 chr3L 3815047 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815112 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815177 intron,intron Scsalpha +,CR43932 - chr3L_9_3815001 chr3L_3815001 RAL-409_95b 620 chr3L 3890964 3890993 chr3L 3891048 3891070 4 80 2.5 0.0 1.2 1.8 106 chr3L 3890964 intergenic not near genes chr3L 3891017 intergenic not near genes chr3L 3891070 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-409_95b 621 chr3L 4229722 4229753 chr3L 4229825 4229861 5 97 5.0 1.0 3.0 1.2 139 chr3L 4229722 intron ImpL2 - chr3L 4229792 intron ImpL2 - chr3L 4229861 intron ImpL2 - chr3L_5_4225001 chr3L_4225001 RAL-409_95b 622 chr3L 4328728 4328760 chr3L 4336242 4336266 412 5 7508 1.0 2.0 1.5 2.0 7538 chr3L 4328728 intron Cip4 - chr3L 4332497 intron Cip4 - chr3L 4336266 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-409_95b 623 chr3L 4446215 4446238 chr3L 4446311 4446344 5 100 2.5 3.5 3.0 1.2 129 chr3L 4446215 3` UTR CR45739 - chr3L 4446280 3` UTR CR45739 - chr3L 4446344 3` UTR CR45739 - chr3L_5_4445001 chr3L_4445001 RAL-409_95b 624 chr3L 4519415 4519449 chr3L 4519496 4519520 12 84 2.5 1.5 2.0 4.0 105 chr3L 4519415 intron Tie - chr3L 4519468 intron Tie - chr3L 4519520 intron Tie - chr3L_12_4515001 chr3L_4515001 RAL-409_95b 625 chr3L 4652558 4652598 chr3L 4652656 4652702 4 98 1.0 5.0 3.0 1.0 144 chr3L 4652558 intron axo - chr3L 4652630 intron axo - chr3L 4652702 intron axo - chr3L_4_4650001 chr3L_4650001 RAL-409_95b 626 chr3L 4837518 4837545 chr3L 4837631 4837647 7 107 5.0 3.0 4.0 1.4 129 chr3L 4837518 intergenic CG13707 - chr3L 4837582 intergenic CG13707 - chr3L 4837647 intergenic CG13707 - chr3L_7_4835001 chr3L_4835001 RAL-409_95b 627 chr3L 4837877 4837906 chr3L 4837976 4837987 4 91 1.5 5.0 3.2 1.0 110 chr3L 4837877 3` UTR CG13707 - chr3L 4837932 3` UTR CG13707 - chr3L 4837987 3` UTR CG13707 - chr3L_4_4835001 chr3L_4835001 RAL-409_95b 628 chr3L 4840414 4840419 chr3L 4840524 4840548 4 114 0.0 3.0 1.5 1.6 134 chr3L 4840414 intergenic CG13707 - chr3L 4840481 intergenic CG13707 - chr3L 4840548 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-409_95b 629 chr3L 4958405 4958447 chr3L 4958508 4958554 6 99 2.0 2.0 2.0 2.0 149 chr3L 4958405 intron Con - chr3L 4958480 intron Con - chr3L 4958554 intron Con - chr3L_6_4955001 chr3L_4955001 RAL-409_95b 630 chr3L 5045462 5045485 chr3L 5050241 5050263 Doc 6 4790 2.0 3.0 2.5 1.7 4801 chr3L 5045462 intron Con - chr3L 5047862 intron Con - chr3L 5050263 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-409_95b 631 chr3L 5104480 5104508 chr3L 5124619 5124660 4 20144 3.5 2.0 2.8 1.1 20180 chr3L 5104480 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124660 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-409_95b 632 chr3L 5130929 5130940 chr3L 5131035 5131063 4 114 7.0 1.0 4.0 0.8 134 chr3L 5130929 intergenic not near genes chr3L 5130996 intergenic not near genes chr3L 5131063 intergenic CG15212 + chr3L_4_5130001 chr3L_5130001 RAL-409_95b 633 chr3L 5212220 5212263 chr3L 5212320 5212348 16 91 3.5 4.0 3.8 3.3 128 chr3L 5212220 intron shep - chr3L 5212284 intron shep - chr3L 5212348 intron shep - chr3L_16_5210001 chr3L_5210001 RAL-409_95b 634 chr3L 5516418 5516440 chr3L 5516505 5516535 4 93 1.5 3.0 2.2 1.2 117 chr3L 5516418 intron Lkr - chr3L 5516476 intron Lkr - chr3L 5516535 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-409_95b 635 chr3L 5729738 5729756 chr3L 5729824 5729837 5 89 6.0 2.5 4.2 1.0 99 chr3L 5729738 intron sif + chr3L 5729788 intron sif + chr3L 5729837 intron sif + chr3L_5_5725001 chr3L_5725001 RAL-409_95b 636 chr3L 5908080 5908106 chr3L 5908164 5908206 5 94 0.0 1.5 0.8 2.8 126 chr3L 5908080 intron CG13288 + chr3L 5908143 intron CG13288 + chr3L 5908206 intron CG13288 + chr3L_5_5905001 chr3L_5905001 RAL-409_95b 637 chr3L 5926320 5926333 chr3L 5926506 5926525 BS 5 193 2.5 3.5 3.0 1.2 205 chr3L 5926320 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926525 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-409_95b 638 chr3L 5957555 5957593 chr3L 5957650 5957669 6 86 2.0 3.0 2.5 1.7 114 chr3L 5957555 intergenic not near genes chr3L 5957612 intergenic not near genes chr3L 5957669 intergenic not near genes chr3L_6_5955001 chr3L_5955001 RAL-409_95b 639 chr3L 5992601 5992621 chr3L 5992704 5992720 10 107 2.0 0.5 1.2 4.5 119 chr3L 5992601 intergenic not near genes chr3L 5992660 intergenic not near genes chr3L 5992720 intergenic not near genes chr3L_10_5990001 chr3L_5990001 RAL-409_95b 640 chr3L 6001681 6001714 chr3L 6004385 6004434 jockey 7 2702 3.0 0.0 1.5 2.8 2753 chr3L 6001681 intron PVRAP + chr3L 6003058 intron PVRAP + chr3L 6004434 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-409_95b 641 chr3L 6040346 6040389 chr3L 6042721 6042765 Doc 9 2365 2.5 3.0 2.8 2.4 2419 chr3L 6040346 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042765 intergenic not near genes chr3L_9_6040001 chr3L_6040001 RAL-409_95b 642 chr3L 6142500 6142527 chr3L 6142729 6142732 5 225 2.0 1.0 1.5 2.0 232 chr3L 6142500 intergenic Cpr65Aw - chr3L 6142616 intergenic Cpr65Aw - chr3L 6142732 intergenic Cpr65Aw - chr3L_5_6140001 chr3L_6140001 RAL-409_95b 643 chr3L 6220914 6220931 chr3L 6230070 6230084 roo 5 9154 7.0 3.5 5.2 0.8 9170 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225499 intergenic not near genes chr3L 6230084 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-409_95b 644 chr3L 6220935 6220944 chr3L 6230068 6230100 roo 4 9147 5.0 3.5 4.2 0.8 9165 chr3L 6220935 5` UTR pncr008:3L + chr3L 6225518 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-409_95b 645 chr3L 6263075 6263111 chr3L 6263154 6263184 4 82 4.5 3.0 3.8 0.8 109 chr3L 6263075 3` UTR CR44522 - chr3L 6263130 3` UTR CR44522 - chr3L 6263184 3` UTR CR44522 - chr3L_4_6260001 chr3L_6260001 RAL-409_95b 646 chr3L 6335027 6335042 chr3L 6335490 6335515 297 8 477 3.0 6.5 4.8 1.4 488 chr3L 6335027 intron CG13300 - chr3L 6335271 intron CG13300 - chr3L 6335515 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-409_95b 647 chr3L 6500430 6500445 chr3L 6500531 6500554 5 114 5.5 4.5 5.0 0.8 124 chr3L 6500430 intron sfl + chr3L 6500492 intron sfl + chr3L 6500554 intron sfl + chr3L_5_6500001 chr3L_6500001 RAL-409_95b 648 chr3L 6765802 6765842 chr3L 6765893 6765934 16 91 3.5 1.5 2.5 4.6 132 chr3L 6765802 intergenic not near genes chr3L 6765868 intergenic not near genes chr3L 6765934 intergenic not near genes chr3L_16_6765001 chr3L_6765001 RAL-409_95b 649 chr3L 6835902 6835919 chr3L 6836000 6836015 4 98 2.0 0.5 1.2 1.8 113 chr3L 6835902 intergenic not near genes chr3L 6835958 intergenic not near genes chr3L 6836015 intergenic not near genes chr3L_4_6835001 chr3L_6835001 RAL-409_95b 650 chr3L 6887539 6887551 chr3L 6895025 6895043 roo 7 7496 2.5 3.0 2.8 1.8 7504 chr3L 6887539 intergenic not near genes chr3L 6891291 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-409_95b 651 chr3L 6974484 6974525 chr3L 6974589 6974625 9 107 0.5 3.0 1.8 3.2 141 chr3L 6974484 intron Galphai - chr3L 6974554 intron Galphai - chr3L 6974625 intron Galphai - chr3L_9_6970001 chr3L_6970001 RAL-409_95b 652 chr3L 7022028 7022050 chr3L 7022249 7022259 4 220 0.0 2.5 1.2 1.8 231 chr3L 7022028 intron Mp + chr3L 7022144 intron Mp + chr3L 7022259 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-409_95b 653 chr3L 7033170 7033201 chr3L 7033254 7033283 9 86 2.5 4.5 3.5 2.0 113 chr3L 7033170 intron Mp + chr3L 7033226 intron Mp + chr3L 7033283 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-409_95b 654 chr3L 7067132 7067174 chr3L 7067322 7067377 11 187 1.5 3.0 2.2 3.4 245 chr3L 7067132 intron,intron CG8641 -,CG14823 + chr3L 7067254 intron,intron CG8641 -,CG14823 + chr3L 7067377 intron,intron CG8641 -,CG14823 + chr3L_11_7065001 chr3L_7065001 RAL-409_95b 655 chr3L 7377313 7377345 chr3L 7380420 7380470 297 5 3118 2.5 3.0 2.8 1.3 3157 chr3L 7377313 intron SMSr - chr3L 7378892 intron SMSr - chr3L 7380470 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-409_95b 656 chr3L 7498763 7498792 chr3L 7503538 7503565 F-element 4 4784 2.5 1.0 1.8 1.4 4802 chr3L 7498763 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503565 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-409_95b 657 chr3L 7581603 7581655 chr3L 7581707 7581734 5 78 1.5 2.5 2.0 1.7 131 chr3L 7581603 intergenic not near genes chr3L 7581668 intergenic not near genes chr3L 7581734 intergenic not near genes chr3L_5_7580001 chr3L_7580001 RAL-409_95b 658 chr3L 7591135 7591179 chr3L 7591236 7591248 4 84 3.5 3.0 3.2 1.0 113 chr3L 7591135 intergenic CG7716 - chr3L 7591192 intergenic CG7716 - chr3L 7591248 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-409_95b 659 chr3L 7793700 7793705 chr3L 7800771 7800777 297 5 7071 7.5 2.5 5.0 0.8 7077 chr3L 7793700 intron CG32369 - chr3L 7797238 intron CG32369 - chr3L 7800777 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-409_95b 660 chr3L 7793712 7793745 chr3L 7800765 7800802 297 7 7057 2.5 2.0 2.2 2.2 7090 chr3L 7793712 intron CG32369 - chr3L 7797257 intron CG32369 - chr3L 7800802 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-409_95b 661 chr3L 7882161 7882190 chr3L 7882246 7882265 4 92 1.0 1.5 1.2 1.8 104 chr3L 7882161 intron CG32365 + chr3L 7882213 intron CG32365 + chr3L 7882265 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-409_95b 662 chr3L 7916831 7916859 chr3L 7926001 7926050 roo 6 9178 1.0 1.0 1.0 3.0 9219 chr3L 7916831 3` UTR syd - chr3L 7921440 intron syd - chr3L 7926050 3` UTR syd - chr3L_6_7920001 chr3L_7920001 RAL-409_95b 663 chr3L 7985366 7985379 chr3L 7987697 7987707 NOF 6 2334 2.5 4.0 3.2 1.4 2341 chr3L 7985366 intron nmo + chr3L 7986536 intron nmo + chr3L 7987707 intron nmo + chr3L_6_7985001 chr3L_7985001 RAL-409_95b 664 chr3L 7995944 7995967 chr3L 7996069 7996079 4 114 5.5 0.0 2.8 1.1 135 chr3L 7995944 intron nmo + chr3L 7996012 intron nmo + chr3L 7996079 intron nmo + chr3L_4_7995001 chr3L_7995001 RAL-409_95b 665 chr3L 8075350 8075376 chr3L 8075448 8075463 4 94 2.5 4.0 3.2 1.0 113 chr3L 8075350 intron Ect4 + chr3L 8075406 intron Ect4 + chr3L 8075463 intron Ect4 + chr3L_4_8075001 chr3L_8075001 RAL-409_95b 666 chr3L 8149757 8149789 chr3L 8149882 8149914 4 120 0.5 2.5 1.5 1.6 157 chr3L 8149757 intron CG13676 - chr3L 8149836 intron CG13676 - chr3L 8149914 intron CG13676 - chr3L_4_8145001 chr3L_8145001 RAL-409_95b 667 chr3L 8207116 8207135 chr3L 8207199 8207213 5 81 1.0 1.5 1.2 2.3 97 chr3L 8207116 intergenic not near genes chr3L 8207164 intergenic not near genes chr3L 8207213 intergenic not near genes chr3L_5_8205001 chr3L_8205001 RAL-409_95b 668 chr3L 8233534 8233565 chr3L 8238982 8239015 Rt1a 6 5453 2.5 1.0 1.8 2.1 5481 chr3L 8233534 intron CG7213 - chr3L 8236274 intron CG7213 - chr3L 8239015 intron,intron CG7213 -,Dscam4 + chr3L_6_8235001 chr3L_8235001 RAL-409_95b 669 chr3L 8249383 8249415 chr3L 8249823 8249857 9 450 3.0 4.0 3.5 2.0 474 chr3L 8249383 intron Dscam4 + chr3L 8249620 intron Dscam4 + chr3L 8249857 intron Dscam4 + chr3L_9_8245001 chr3L_8245001 RAL-409_95b 670 chr3L 8498288 8498328 chr3L 8505767 8505815 blood 4 7479 2.5 5.0 3.8 0.8 7527 chr3L 8498288 intron CG43163 - chr3L 8502052 intron CG43163 - chr3L 8505815 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-409_95b 671 chr3L 8579832 8579877 chr3L 8579932 8579961 8 95 4.0 4.5 4.2 1.5 129 chr3L 8579832 intron CG43078 + chr3L 8579896 intron CG43078 + chr3L 8579961 intron CG43078 + chr3L_8_8575001 chr3L_8575001 RAL-409_95b 672 chr3L 8682613 8682643 chr3L 8682720 8682735 4 103 2.5 4.0 3.2 1.0 122 chr3L 8682613 intergenic not near genes chr3L 8682674 intergenic not near genes chr3L 8682735 intergenic not near genes chr3L_4_8680001 chr3L_8680001 RAL-409_95b 673 chr3L 8717269 8717288 chr3L 8717462 8717495 8 205 4.0 3.0 3.5 1.8 226 chr3L 8717269 intergenic not near genes chr3L 8717382 intergenic not near genes chr3L 8717495 intergenic not near genes chr3L_8_8715001 chr3L_8715001 RAL-409_95b 674 chr3L 8832401 8832433 chr3L 8832503 8832532 9 99 4.0 6.0 5.0 1.5 131 chr3L 8832401 intron dally + chr3L 8832466 intron dally + chr3L 8832532 intron dally + chr3L_9_8830001 chr3L_8830001 RAL-409_95b 675 chr3L 8839710 8839751 chr3L 8839808 8839851 6 99 3.0 0.0 1.5 2.4 141 chr3L 8839710 intron dally + chr3L 8839780 intron dally + chr3L 8839851 intron dally + chr3L_6_8835001 chr3L_8835001 RAL-409_95b 676 chr3L 8916559 8916568 chr3L 8916651 8916669 4 93 0.5 3.0 1.8 1.4 110 chr3L 8916559 intron Tsp66E + chr3L 8916614 intron Tsp66E + chr3L 8916669 intron Tsp66E + chr3L_4_8915001 chr3L_8915001 RAL-409_95b 677 chr3L 8950551 8950579 chr3L 8950642 8950672 10 97 1.5 1.0 1.2 4.5 121 chr3L 8950551 intron,intron CG43783 -,orb2 - chr3L 8950612 intron,intron CG43783 -,orb2 - chr3L 8950672 intron,intron CG43783 -,orb2 - chr3L_10_8950001 chr3L_8950001 RAL-409_95b 678 chr3L 9003941 9003977 chr3L 9004036 9004072 7 94 1.0 2.5 1.8 2.5 131 chr3L 9003941 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004072 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-409_95b 679 chr3L 9024483 9024536 chr3L 9024583 9024614 9 84 4.0 3.5 3.8 1.9 131 chr3L 9024483 intergenic not near genes chr3L 9024548 intergenic not near genes chr3L 9024614 intergenic not near genes chr3L_9_9020001 chr3L_9020001 RAL-409_95b 680 chr3L 9076913 9076931 chr3L 9084493 9084511 412 4 7580 11.0 5.5 8.2 0.4 7598 chr3L 9076913 exon Tequila + chr3L 9080712 intron Tequila + chr3L 9084511 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-409_95b 681 chr3L 9076933 9076959 chr3L 9084491 9084523 412 6 7565 5.5 5.0 5.2 1.0 7590 chr3L 9076933 exon Tequila + chr3L 9080728 intron Tequila + chr3L 9084523 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-409_95b 682 chr3L 9128198 9128217 chr3L 9128287 9128307 8 94 3.0 5.5 4.2 1.5 109 chr3L 9128198 intron bol - chr3L 9128252 intron bol - chr3L 9128307 intron bol - chr3L_8_9125001 chr3L_9125001 RAL-409_95b 683 chr3L 9130570 9130578 chr3L 9134319 9134336 412 5 3762 6.5 4.5 5.5 0.8 3766 chr3L 9130570 intergenic bol - chr3L 9132453 intergenic not near genes chr3L 9134336 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-409_95b 684 chr3L 9164707 9164732 chr3L 9166185 9166198 hobo 4 1474 1.5 1.5 1.5 1.6 1491 chr3L 9164707 intron Rdl - chr3L 9165452 intron Rdl - chr3L 9166198 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-409_95b 685 chr3L 9219221 9219275 chr3L 9219913 9219942 jockey 10 681 1.5 3.0 2.2 3.1 721 chr3L 9219221 intergenic not near genes chr3L 9219582 intergenic not near genes chr3L 9219942 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-409_95b 686 chr3L 9290033 9290072 chr3L 9290129 9290157 8 86 0.5 0.0 0.2 6.7 124 chr3L 9290033 intergenic not near genes chr3L 9290095 intergenic not near genes chr3L 9290157 intergenic not near genes chr3L_8_9290001 chr3L_9290001 RAL-409_95b 687 chr3L 9443492 9443539 chr3L 9445298 9445335 S-element 8 1796 0.5 2.5 1.5 3.2 1843 chr3L 9443492 intron CG33926 + chr3L 9444414 intron CG33926 + chr3L 9445335 intron CG33926 + chr3L_8_9440001 chr3L_9440001 RAL-409_95b 688 chr3L 9524034 9524067 chr3L 9524118 9524151 7 93 4.0 4.0 4.0 1.4 117 chr3L 9524034 intron CG33700 - chr3L 9524092 intron CG33700 - chr3L 9524151 intron CG33700 - chr3L_7_9520001 chr3L_9520001 RAL-409_95b 689 chr3L 9575891 9575927 chr3L 9580989 9581001 jockey 6 5089 3.5 1.5 2.5 1.7 5110 chr3L 9575891 intron CG42673 + chr3L 9578446 intron CG42673 + chr3L 9581001 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-409_95b 690 chr3L 9775093 9775141 chr3L 9775194 9775218 7 91 0.0 3.5 1.8 2.5 125 chr3L 9775093 intron CG8177 + chr3L 9775156 intron CG8177 + chr3L 9775218 intron CG8177 + chr3L_7_9775001 chr3L_9775001 RAL-409_95b 691 chr3L 9918869 9918912 chr3L 9918984 9919026 4 108 2.5 4.0 3.2 1.0 157 chr3L 9918869 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919026 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-409_95b 692 chr3L 9929654 9929697 chr3L 9938452 9938475 roo 5 8780 2.0 2.0 2.0 1.7 8821 chr3L 9929654 intron CG34356 + chr3L 9934064 intron CG34356 + chr3L 9938475 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-409_95b 693 chr3L 9989109 9989140 chr3L 9989422 9989436 5 307 1.0 1.0 1.0 2.5 327 chr3L 9989109 intron dpr6 + chr3L 9989272 intron dpr6 + chr3L 9989436 intron dpr6 + chr3L_5_9985001 chr3L_9985001 RAL-409_95b 694 chr3L 10214719 10214830 chr3L 10214821 10214925 6 107 0.0 0.0 0.0 6.0 206 chr3L 10214719 intergenic not near genes chr3L 10214822 intergenic not near genes chr3L 10214925 intergenic not near genes chr3L_6_10210001 chr3L_10210001 RAL-409_95b 695 chr3L 10308734 10308752 chr3L 10308831 10308832 6 94 1.5 2.0 1.8 2.1 98 chr3L 10308734 intergenic not near genes chr3L 10308783 intergenic not near genes chr3L 10308832 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-409_95b 696 chr3L 10395494 10395507 chr3L 10395663 10395693 4 176 2.0 3.0 2.5 1.1 199 chr3L 10395494 intergenic not near genes chr3L 10395594 intergenic not near genes chr3L 10395693 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-409_95b 697 chr3L 10414925 10414959 chr3L 10417317 10417327 Doc 6 2387 3.5 0.0 1.8 2.1 2402 chr3L 10414925 intergenic CG12362 + chr3L 10416126 intergenic not near genes chr3L 10417327 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-409_95b 698 chr3L 10417574 10417606 chr3L 10417643 10417672 8 77 3.5 4.0 3.8 1.7 98 chr3L 10417574 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417672 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-409_95b 699 chr3L 10551464 10551472 chr3L 10551552 10551562 4 89 0.0 3.0 1.5 1.6 98 chr3L 10551464 intron A2bp1 + chr3L 10551513 intron A2bp1 + chr3L 10551562 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-409_95b 700 chr3L 10611314 10611337 chr3L 10611388 10611423 8 81 3.0 4.0 3.5 1.8 109 chr3L 10611314 intergenic not near genes chr3L 10611368 intergenic not near genes chr3L 10611423 intergenic not near genes chr3L_8_10610001 chr3L_10610001 RAL-409_95b 701 chr3L 10658077 10658206 chr3L 10658158 10658330 8 106 0.5 0.5 0.5 5.3 253 chr3L 10658077 intron CG32066 - chr3L 10658204 intron CG32066 - chr3L 10658330 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-409_95b 702 chr3L 10762822 10762855 chr3L 10762913 10762958 5 94 3.5 1.0 2.2 1.6 136 chr3L 10762822 intergenic not near genes chr3L 10762890 intergenic not near genes chr3L 10762958 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-409_95b 703 chr3L 10764137 10764158 chr3L 10764219 10764225 6 84 4.0 3.5 3.8 1.2 88 chr3L 10764137 intergenic not near genes chr3L 10764181 intergenic not near genes chr3L 10764225 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-409_95b 704 chr3L 10774748 10774760 chr3L 10775640 10775657 6 894 2.5 4.5 3.5 1.3 909 chr3L 10774748 intergenic not near genes chr3L 10775202 intergenic not near genes chr3L 10775657 intergenic not near genes chr3L_6_10775001 chr3L_10775001 RAL-409_95b 705 chr3L 11087067 11087087 chr3L 11088857 11088894 S-element 7 1795 0.0 2.5 1.2 3.2 1827 chr3L 11087067 intron JIL-1 - chr3L 11087980 intron JIL-1 - chr3L 11088894 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-409_95b 706 chr3L 11264479 11264488 chr3L 11271450 11271459 17.6 4 6971 3.0 4.5 3.8 0.8 6980 chr3L 11264479 intergenic not near genes chr3L 11267969 intergenic not near genes chr3L 11271459 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-409_95b 707 chr3L 11277460 11277466 chr3L 11278452 11278481 Rt1a 5 1007 0.5 2.0 1.2 2.3 1021 chr3L 11277460 intergenic not near genes chr3L 11277970 intergenic not near genes chr3L 11278481 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-409_95b 708 chr3L 11329693 11329726 chr3L 11332900 11332907 jockey 5 3202 1.5 2.0 1.8 1.8 3214 chr3L 11329693 intergenic not near genes chr3L 11331300 intergenic not near genes chr3L 11332907 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-409_95b 709 chr3L 11383965 11383995 chr3L 11384040 11384068 10 74 2.0 2.5 2.2 3.1 103 chr3L 11383965 3` UTR CR42755 - chr3L 11384016 3` UTR CR42755 - chr3L 11384068 3` UTR CR42755 - chr3L_10_11380001 chr3L_11380001 RAL-409_95b 710 chr3L 11541177 11541208 chr3L 11541275 11541287 6 86 0.5 0.0 0.2 5.0 110 chr3L 11541177 intron Mob2 - chr3L 11541232 intron Mob2 - chr3L 11541287 intron Mob2 - chr3L_6_11540001 chr3L_11540001 RAL-409_95b 711 chr3L 11553711 11553731 chr3L 11553832 11553832 4 112 1.5 2.5 2.0 1.3 121 chr3L 11553711 intron Mob2 - chr3L 11553772 intron Mob2 - chr3L 11553832 intron Mob2 - chr3L_4_11550001 chr3L_11550001 RAL-409_95b 712 chr3L 11723085 11723112 chr3L 11727882 11727905 Doc 8 4802 4.5 4.0 4.2 1.5 4820 chr3L 11723085 3` UTR Bmcp + chr3L 11725495 intron Bmcp + chr3L 11727905 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-409_95b 713 chr3L 11740133 11740155 chr3L 11740230 11740241 6 100 3.0 3.0 3.0 1.5 108 chr3L 11740133 intron CG6024 - chr3L 11740187 intron CG6024 - chr3L 11740241 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-409_95b 714 chr3L 7749471 7749471 chr3L 11777678 11777678 9 4028207 11.0 3.5 7.2 1.1 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_9760001 chr3L_9760001 RAL-409_95b 715 chr3L 11847153 11847174 chr3L 11847263 11847276 4 106 1.0 0.0 0.5 2.7 123 chr3L 11847153 intergenic CG12521 - chr3L 11847214 intergenic CG12521 - chr3L 11847276 intergenic CG12521 - chr3L_4_11845001 chr3L_11845001 RAL-409_95b 716 chr3L 11850135 11850168 chr3L 11850244 11850245 10 101 5.0 0.0 2.5 2.9 110 chr3L 11850135 intergenic not near genes chr3L 11850190 intergenic CG44837 - chr3L 11850245 intergenic CG44837 - chr3L_10_11850001 chr3L_11850001 RAL-409_95b 717 chr3L 11864552 11864579 chr3L 11865849 11865857 pogo 12 1298 3.5 1.5 2.5 3.4 1305 chr3L 11864552 intron CG44837 - chr3L 11865204 intron CG44837 - chr3L 11865857 intron CG44837 - chr3L_12_11865001 chr3L_11865001 RAL-409_95b 718 chr3L 11887267 11887288 chr3L 11887366 11887405 4 104 0.5 1.0 0.8 2.2 138 chr3L 11887267 intron,3` UTR CG44837 -,CG5897 - chr3L 11887336 intron,3` UTR CG44837 -,CG5897 - chr3L 11887405 intron,3` UTR CG44837 -,CG5897 - chr3L_4_11885001 chr3L_11885001 RAL-409_95b 719 chr3L 12013902 12013937 chr3L 12014013 12014046 13 99 3.5 3.5 3.5 2.9 144 chr3L 12013902 intron rols - chr3L 12013974 intron rols - chr3L 12014046 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-409_95b 720 chr3L 12158779 12158804 chr3L 12160258 12160279 15 1474 70.0 33.0 51.5 0.3 1500 chr3L 12158779 intron CG9760 - chr3L 12159529 exon CG9760 - chr3L 12160279 intron CG9760 - chr3L_15_12155001 chr3L_12155001 RAL-409_95b 721 chr3L 12156429 12156456 chr3L 12160308 12160349 10 3887 10.5 16.5 13.5 0.7 3920 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158389 intron CG9760 - chr3L 12160349 intron CG9760 - chr3L_10_12155001 chr3L_12155001 RAL-409_95b 722 chr3L 12170787 12170824 chr3L 12170875 12170911 5 90 1.0 3.5 2.2 1.6 124 chr3L 12170787 intron Rh7 - chr3L 12170849 intron Rh7 - chr3L 12170911 intron Rh7 - chr3L_5_12170001 chr3L_12170001 RAL-409_95b 723 chr3L 12339566 12339570 chr3L 12339652 12339673 5 90 1.0 7.0 4.0 1.0 107 chr3L 12339566 3` UTR CrzR - chr3L 12339620 3` UTR CrzR - chr3L 12339673 3` UTR CrzR - chr3L_5_12335001 chr3L_12335001 RAL-409_95b 724 chr3L 12369516 12369568 chr3L 12369626 12369672 4 108 0.5 0.5 0.5 2.7 156 chr3L 12369516 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369672 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-409_95b 725 chr3L 12435931 12435962 chr3L 12436337 12436340 10 403 1.0 2.0 1.5 4.0 409 chr3L 12435931 intergenic not near genes chr3L 12436136 intergenic not near genes chr3L 12436340 intergenic not near genes chr3L_10_12435001 chr3L_12435001 RAL-409_95b 726 chr3L 12476267 12476315 chr3L 12476364 12476406 6 89 3.0 2.5 2.8 1.6 139 chr3L 12476267 intron CG10663 - chr3L 12476336 intron CG10663 - chr3L 12476406 intron CG10663 - chr3L_6_12475001 chr3L_12475001 RAL-409_95b 727 chr3L 12611007 12611028 chr3L 12611255 12611273 5 254 1.0 2.5 1.8 1.8 266 chr3L 12611007 intron caup + chr3L 12611140 intron caup + chr3L 12611273 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-409_95b 728 chr3L 12706646 12706654 chr3L 12706777 12706795 4 136 2.0 4.5 3.2 1.0 149 chr3L 12706646 intron mirr + chr3L 12706720 intron mirr + chr3L 12706795 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-409_95b 729 chr3L 12720322 12720356 chr3L 12720411 12720437 15 95 1.5 6.0 3.8 3.1 115 chr3L 12720322 intergenic not near genes chr3L 12720380 intergenic not near genes chr3L 12720437 intergenic not near genes chr3L_15_12720001 chr3L_12720001 RAL-409_95b 730 chr3L 12801978 12802009 chr3L 12802057 12802105 8 87 1.0 1.5 1.2 3.6 127 chr3L 12801978 intron Atg1 - chr3L 12802042 intron Atg1 - chr3L 12802105 intron Atg1 - chr3L_8_12800001 chr3L_12800001 RAL-409_95b 731 chr3L 12874930 12874954 chr3L 12877217 12877247 jockey 8 2294 1.5 2.0 1.8 2.9 2317 chr3L 12874930 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877247 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-409_95b 732 chr3L 12919280 12919290 chr3L 12924763 12924776 Rt1c 4 5487 4.0 1.5 2.8 1.1 5496 chr3L 12919280 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-409_95b 733 chr3L 12957787 12957815 chr3L 12962269 12962317 copia 10 4496 3.5 6.5 5.0 1.7 4530 chr3L 12957787 intergenic not near genes chr3L 12960052 intergenic not near genes chr3L 12962317 intergenic not near genes chr3L_10_12960001 chr3L_12960001 RAL-409_95b 734 chr3L 12968158 12968201 chr3L 12968261 12968299 6 93 2.0 3.5 2.8 1.6 141 chr3L 12968158 intergenic Or69a - chr3L 12968228 intergenic Or69a - chr3L 12968299 intergenic not near genes chr3L_6_12965001 chr3L_12965001 RAL-409_95b 735 chr3L 13007675 13007725 chr3L 13007773 13007802 9 85 1.0 1.0 1.0 4.5 127 chr3L 13007675 exon CG11263 + chr3L 13007738 3` UTR CG11263 + chr3L 13007802 3` UTR CG11263 + chr3L_9_13005001 chr3L_13005001 RAL-409_95b 736 chr3L 13074043 13074068 chr3L 13074170 13074200 9 133 4.5 5.0 4.8 1.6 157 chr3L 13074043 intergenic not near genes chr3L 13074122 intergenic not near genes chr3L 13074200 intergenic not near genes chr3L_9_13070001 chr3L_13070001 RAL-409_95b 737 chr3L 13085053 13085074 chr3L 13085135 13085171 4 94 2.5 3.0 2.8 1.1 118 chr3L 13085053 intergenic not near genes chr3L 13085112 intergenic not near genes chr3L 13085171 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-409_95b 738 chr3L 13137955 13137967 chr3L 13138031 13138075 4 90 0.5 1.5 1.0 2.0 120 chr3L 13137955 intergenic not near genes chr3L 13138015 intergenic not near genes chr3L 13138075 intergenic not near genes chr3L_4_13135001 chr3L_13135001 RAL-409_95b 739 chr3L 13178294 13178320 chr3L 13178383 13178443 4 99 3.0 0.0 1.5 1.6 149 chr3L 13178294 intergenic not near genes chr3L 13178368 intergenic not near genes chr3L 13178443 intergenic not near genes chr3L_4_13175001 chr3L_13175001 RAL-409_95b 740 chr3L 13194070 13194096 chr3L 13194146 13194195 8 81 2.0 0.5 1.2 3.6 125 chr3L 13194070 intergenic not near genes chr3L 13194132 intergenic not near genes chr3L 13194195 intergenic not near genes chr3L_8_13190001 chr3L_13190001 RAL-409_95b 741 chr3L 13206246 13206264 chr3L 13206318 13206366 4 85 1.0 4.0 2.5 1.1 120 chr3L 13206246 intergenic not near genes chr3L 13206306 intergenic not near genes chr3L 13206366 intergenic not near genes chr3L_4_13205001 chr3L_13205001 RAL-409_95b 742 chr3L 13213734 13213760 chr3L 13213801 13213854 4 88 0.0 0.5 0.2 3.3 120 chr3L 13213734 intergenic not near genes chr3L 13213794 intergenic not near genes chr3L 13213854 intergenic not near genes chr3L_4_13210001 chr3L_13210001 RAL-409_95b 743 chr3L 13257271 13257283 chr3L 13257339 13257365 4 79 4.0 3.0 3.5 0.9 94 chr3L 13257271 intron caps + chr3L 13257318 intron caps + chr3L 13257365 intron caps + chr3L_4_13255001 chr3L_13255001 RAL-409_95b 744 chr3L 13265195 13265203 chr3L 13265270 13265278 5 83 3.0 2.5 2.8 1.3 83 chr3L 13265195 5` UTR caps + chr3L 13265236 5` UTR caps + chr3L 13265278 5` UTR caps + chr3L_5_13265001 chr3L_13265001 RAL-409_95b 745 chr3L 13477026 13477031 chr3L 13477101 13477110 4 81 0.0 1.5 0.8 2.2 84 chr3L 13477026 intergenic not near genes chr3L 13477068 intergenic stv + chr3L 13477110 intergenic stv + chr3L_4_13475001 chr3L_13475001 RAL-409_95b 746 chr3L 13525141 13525188 chr3L 13532957 13532989 roo 9 7801 4.5 5.0 4.8 1.6 7848 chr3L 13525141 intergenic not near genes chr3L 13529065 intergenic not near genes chr3L 13532989 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-409_95b 747 chr3L 13535901 13535938 chr3L 13535977 13536004 7 78 3.0 2.5 2.8 1.8 103 chr3L 13535901 intergenic not near genes chr3L 13535952 intergenic not near genes chr3L 13536004 intergenic not near genes chr3L_7_13535001 chr3L_13535001 RAL-409_95b 748 chr3L 13804535 13804573 chr3L 13822830 13822877 roo 11 18296 4.0 3.0 3.5 2.4 18342 chr3L 13804535 intergenic not near genes chr3L 13813706 intergenic not near genes chr3L 13822877 intergenic not near genes chr3L_11_13810001 chr3L_13810001 RAL-409_95b 749 chr3L 13990902 13990920 chr3L 13990975 13991015 5 76 2.5 2.0 2.2 1.6 113 chr3L 13990902 intron CG17364 - chr3L 13990958 intron CG17364 - chr3L 13991015 intron CG17364 - chr3L_5_13990001 chr3L_13990001 RAL-409_95b 750 chr3L 14239992 14239998 chr3L 14240089 14240112 4 102 2.0 1.5 1.8 1.4 120 chr3L 14239992 intergenic not near genes chr3L 14240052 intergenic not near genes chr3L 14240112 intergenic not near genes chr3L_4_14240001 chr3L_14240001 RAL-409_95b 751 chr3L 14245551 14245594 chr3L 14245665 14245708 1360 7 105 2.0 3.0 2.5 2.0 157 chr3L 14245551 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245708 intergenic CR44561 -,CR44560 + chr3L_7_14245001 chr3L_14245001 RAL-409_95b 752 chr3L 14295982 14296009 chr3L 14296485 14296507 roo 5 500 1.5 3.0 2.2 1.6 525 chr3L 14295982 intron fz + chr3L 14296244 intron fz + chr3L 14296507 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-409_95b 753 chr3L 14326964 14326985 chr3L 14327106 14327130 6 144 3.5 4.5 4.0 1.2 166 chr3L 14326964 intron fz + chr3L 14327047 intron fz + chr3L 14327130 intron fz + chr3L_6_14325001 chr3L_14325001 RAL-409_95b 754 chr3L 14356514 14356541 chr3L 14356599 14356623 6 86 4.5 2.0 3.2 1.4 109 chr3L 14356514 intron fz + chr3L 14356568 intron fz + chr3L 14356623 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-409_95b 755 chr3L 14381126 14381143 chr3L 14381387 14381424 4 264 1.5 1.5 1.5 1.6 298 chr3L 14381126 intergenic not near genes chr3L 14381275 intergenic not near genes chr3L 14381424 intergenic CG43120 + chr3L_4_14380001 chr3L_14380001 RAL-409_95b 756 chr3L 14411844 14411873 chr3L 14411936 14411981 7 93 2.0 0.0 1.0 3.5 137 chr3L 14411844 intron CG3919 + chr3L 14411912 intron CG3919 + chr3L 14411981 intron CG3919 + chr3L_7_14410001 chr3L_14410001 RAL-409_95b 757 chr3L 14462885 14462908 chr3L 14462972 14462993 6 90 0.0 1.0 0.5 4.0 108 chr3L 14462885 intron bbg - chr3L 14462939 intron bbg - chr3L 14462993 intron bbg - chr3L_6_14460001 chr3L_14460001 RAL-409_95b 758 chr3L 14519600 14519618 chr3L 14519685 14519701 5 96 1.0 0.5 0.8 2.8 101 chr3L 14519600 intron bbg - chr3L 14519650 intron bbg - chr3L 14519701 intron bbg - chr3L_5_14515001 chr3L_14515001 RAL-409_95b 759 chr3L 14546604 14546810 chr3L 14546698 14546894 6 91 0.0 3.5 1.8 2.1 290 chr3L 14546604 intron CG9238 - chr3L 14546749 intron CG9238 - chr3L 14546894 intron CG9238 - chr3L_6_14545001 chr3L_14545001 RAL-409_95b 760 chr3L 14623707 14623740 chr3L 14623836 14623862 5 118 0.5 1.0 0.8 2.8 155 chr3L 14623707 intron CG9628 + chr3L 14623784 intron CG9628 + chr3L 14623862 intron CG9628 + chr3L_5_14620001 chr3L_14620001 RAL-409_95b 761 chr3L 14684606 14684624 chr3L 14684718 14684721 4 103 3.5 4.0 3.8 0.8 115 chr3L 14684606 intron ome + chr3L 14684664 intron ome + chr3L 14684721 intron ome + chr3L_4_14680001 chr3L_14680001 RAL-409_95b 762 chr3L 14803360 14803388 chr3L 14803448 14803475 9 94 1.0 2.5 1.8 3.2 115 chr3L 14803360 5` UTR gnu - chr3L 14803418 intergenic gnu - chr3L 14803475 intergenic gnu - chr3L_9_14800001 chr3L_14800001 RAL-409_95b 763 chr3L 14809174 14809217 chr3L 14809275 14809314 7 89 1.5 3.5 2.5 2.0 140 chr3L 14809174 intron CG17839 + chr3L 14809244 intron CG17839 + chr3L 14809314 intron CG17839 + chr3L_7_14805001 chr3L_14805001 RAL-409_95b 764 chr3L 14922091 14922134 chr3L 14922212 14922232 7 112 3.0 0.5 1.8 2.5 141 chr3L 14922091 intron DCX-EMAP + chr3L 14922162 intron DCX-EMAP + chr3L 14922232 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 RAL-409_95b 765 chr3L 15141131 15141172 chr3L 15141526 15141567 9 381 0.5 3.0 1.8 3.2 436 chr3L 15141131 intron Pdi - chr3L 15141349 intron Pdi - chr3L 15141567 intron Pdi - chr3L_9_15140001 chr3L_15140001 RAL-409_95b 766 chr3L 15304369 15304423 chr3L 15304472 15304507 13 94 2.5 1.0 1.8 4.6 138 chr3L 15304369 5` UTR CG7255 + chr3L 15304438 5` UTR CG7255 + chr3L 15304507 5` UTR CG7255 + chr3L_13_15300001 chr3L_15300001 RAL-409_95b 767 chr3L 15384955 15384984 chr3L 15385086 15385121 11 132 3.0 1.5 2.2 3.4 166 chr3L 15384955 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385121 intergenic not near genes chr3L_11_15385001 chr3L_15385001 RAL-409_95b 768 chr3L 15406010 15406045 chr3L 15406112 15406119 4 82 2.5 4.0 3.2 1.0 109 chr3L 15406010 intergenic not near genes chr3L 15406064 intergenic not near genes chr3L 15406119 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-409_95b 769 chr3L 15422461 15422509 chr3L 15422565 15422596 7 91 1.0 1.5 1.2 3.2 135 chr3L 15422461 intergenic not near genes chr3L 15422528 intergenic not near genes chr3L 15422596 intergenic not near genes chr3L_7_15420001 chr3L_15420001 RAL-409_95b 770 chr3L 15423762 15423781 chr3L 15426620 15426627 opus 5 2855 2.0 1.0 1.5 2.0 2865 chr3L 15423762 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426627 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-409_95b 771 chr3L 15444635 15444685 chr3L 15444743 15444786 15 98 4.0 4.5 4.2 2.9 151 chr3L 15444635 intergenic not near genes chr3L 15444710 intergenic not near genes chr3L 15444786 intergenic not near genes chr3L_15_15440001 chr3L_15440001 RAL-409_95b 772 chr3L 15466023 15466128 chr3L 15466125 15466222 4 97 0.0 0.0 0.0 4.0 199 chr3L 15466023 intergenic not near genes chr3L 15466122 intergenic not near genes chr3L 15466222 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-409_95b 773 chr3L 15536599 15536622 chr3L 15536700 15536708 6 96 12.0 4.0 8.0 0.7 109 chr3L 15536599 intron CrebA + chr3L 15536654 intron CrebA + chr3L 15536708 intron CrebA + chr3L_6_15535001 chr3L_15535001 RAL-409_95b 774 chr3L 15536623 15536650 chr3L 15536697 15536727 13 85 8.5 4.0 6.2 1.8 104 chr3L 15536623 intron CrebA + chr3L 15536675 intron CrebA + chr3L 15536727 intron CrebA + chr3L_13_15535001 chr3L_15535001 RAL-409_95b 775 chr3L 15628164 15628198 chr3L 15628283 15628301 7 112 2.0 3.5 2.8 1.8 137 chr3L 15628164 intron comm3 - chr3L 15628232 intron comm3 - chr3L 15628301 intron comm3 - chr3L_7_15625001 chr3L_15625001 RAL-409_95b 776 chr3L 15696283 15696309 chr3L 15696427 15696474 11 154 1.5 5.5 3.5 2.4 191 chr3L 15696283 intergenic not near genes chr3L 15696378 intergenic not near genes chr3L 15696474 intergenic not near genes chr3L_11_15695001 chr3L_15695001 RAL-409_95b 777 chr3L 15754580 15754608 chr3L 15754664 15754698 6 86 1.5 1.0 1.2 2.7 118 chr3L 15754580 intergenic not near genes chr3L 15754639 intergenic not near genes chr3L 15754698 intergenic not near genes chr3L_6_15750001 chr3L_15750001 RAL-409_95b 778 chr3L 15833806 15833846 chr3L 15834043 15834065 4 233 15.0 13.0 14.0 0.3 259 chr3L 15833806 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834065 3` UTR CG18081 - chr3L_4_15830001 chr3L_15830001 RAL-409_95b 779 chr3L 15840421 15840468 chr3L 15840529 15840567 4 98 0.0 0.5 0.2 3.3 146 chr3L 15840421 intron CG32150 - chr3L 15840494 intron CG32150 - chr3L 15840567 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-409_95b 780 chr3L 15968207 15968244 chr3L 15968309 15968347 5 100 4.0 3.5 3.8 1.0 140 chr3L 15968207 5` UTR CG10516 + chr3L 15968277 5` UTR CG10516 + chr3L 15968347 5` UTR CG10516 + chr3L_5_15965001 chr3L_15965001 RAL-409_95b 781 chr3L 16184110 16184140 chr3L 16188925 16188958 X-element 7 4824 0.5 0.5 0.5 4.7 4848 chr3L 16184110 intergenic not near genes chr3L 16186534 intergenic not near genes chr3L 16188958 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-409_95b 782 chr3L 16198386 16198414 chr3L 16198473 16198518 5 101 2.5 1.5 2.0 1.7 132 chr3L 16198386 intron CG33687 + chr3L 16198452 exon CG33687 + chr3L 16198518 exon CG33687 + chr3L_5_16195001 chr3L_16195001 RAL-409_95b 783 chr3L 16279089 16279097 chr3L 16279168 16279195 4 94 1.5 2.5 2.0 1.3 106 chr3L 16279089 intron CG13050 - chr3L 16279142 intron CG13050 - chr3L 16279195 intron CG13050 - chr3L_4_16275001 chr3L_16275001 RAL-409_95b 784 chr3L 16340246 16340280 chr3L 16340390 16340413 6 136 3.5 3.5 3.5 1.3 167 chr3L 16340246 intron CG4998 + chr3L 16340330 intron CG4998 + chr3L 16340413 intron CG4998 + chr3L_6_16340001 chr3L_16340001 RAL-409_95b 785 chr3L 16443845 16443871 chr3L 16446196 16446231 Doc 7 2347 2.5 7.0 4.8 1.2 2386 chr3L 16443845 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446231 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-409_95b 786 chr3L 16493970 16494005 chr3L 16494492 16494542 jockey 8 529 4.5 6.0 5.2 1.3 572 chr3L 16493970 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494256 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494542 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-409_95b 787 chr3L 16540042 16540063 chr3L 16540150 16540150 5 102 3.5 2.0 2.8 1.3 108 chr3L 16540042 intron CG43373 - chr3L 16540096 intron CG43373 - chr3L 16540150 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-409_95b 788 chr3L 16540064 16540084 chr3L 16540149 16540170 5 89 2.0 2.0 2.0 1.7 106 chr3L 16540064 intron CG43373 - chr3L 16540117 intron CG43373 - chr3L 16540170 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-409_95b 789 chr3L 16749198 16749235 chr3L 16749280 16749306 8 84 3.0 1.5 2.2 2.5 108 chr3L 16749198 intergenic not near genes chr3L 16749252 intergenic not near genes chr3L 16749306 intergenic not near genes chr3L_8_16745001 chr3L_16745001 RAL-409_95b 790 chr3L 16757624 16757664 chr3L 16757734 16757755 4 102 1.0 3.0 2.0 1.3 131 chr3L 16757624 intergenic not near genes chr3L 16757690 intergenic not near genes chr3L 16757755 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-409_95b 791 chr3L 16805001 16805034 chr3L 16805136 16805144 8 127 4.5 1.0 2.8 2.1 143 chr3L 16805001 intron,5` UTR CG9674 -,nudC + chr3L 16805072 intron,5` UTR CG9674 -,nudC + chr3L 16805144 intron,5` UTR CG9674 -,nudC + chr3L_8_16805001 chr3L_16805001 RAL-409_95b 792 chr3L 16818746 16818779 chr3L 16818825 16818874 4 80 4.0 4.5 4.2 0.8 128 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818810 intron,intron nudC +,CG13024 - chr3L 16818874 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-409_95b 793 chr3L 16826756 16826791 chr3L 16826848 16826898 6 97 6.0 2.0 4.0 1.2 142 chr3L 16826756 intron CG13024 - chr3L 16826827 intron CG13024 - chr3L 16826898 intron CG13024 - chr3L_6_16825001 chr3L_16825001 RAL-409_95b 794 chr3L 16861007 16861054 chr3L 16861129 16861156 10 116 2.5 1.0 1.8 3.6 149 chr3L 16861007 intron,exon Rh4 -,CG13029 + chr3L 16861082 intron,intron Rh4 -,CG13029 + chr3L 16861156 intron,exon Rh4 -,CG13029 + chr3L_10_16860001 chr3L_16860001 RAL-409_95b 795 chr3L 16945709 16945754 chr3L 16954880 16954909 roo 17 9152 2.0 2.5 2.2 5.3 9200 chr3L 16945709 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954909 5` UTR Nc73EF + chr3L_17_16950001 chr3L_16950001 RAL-409_95b 796 chr3L 17027159 17027188 chr3L 17027271 17027283 4 104 0.0 1.5 0.8 2.2 124 chr3L 17027159 intergenic Fit2 +,CG7730 + chr3L 17027221 intergenic Fit2 +,CG7730 + chr3L 17027283 intergenic Fit2 +,CG7730 + chr3L_4_17025001 chr3L_17025001 RAL-409_95b 797 chr3L 17085009 17085034 chr3L 17094158 17094188 roo 7 9155 2.0 3.5 2.8 1.8 9179 chr3L 17085009 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094188 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-409_95b 798 chr3L 17149147 17149167 chr3L 17149248 17149252 4 95 3.5 1.0 2.2 1.2 105 chr3L 17149147 intron Rbp6 - chr3L 17149200 intron Rbp6 - chr3L 17149252 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-409_95b 799 chr3L 17149169 17149191 chr3L 17149247 17149265 5 79 2.5 1.0 1.8 1.8 96 chr3L 17149169 intron Rbp6 - chr3L 17149217 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-409_95b 800 chr3L 17344610 17344648 chr3L 17344713 17344736 9 92 4.5 1.0 2.8 2.4 126 chr3L 17344610 exon brv2 - chr3L 17344673 5` UTR brv2 - chr3L 17344736 intergenic brv2 -,Mip - chr3L_9_17340001 chr3L_17340001 RAL-409_95b 801 chr3L 17430476 17430487 chr3L 17430546 17430561 5 76 5.0 3.5 4.2 1.0 85 chr3L 17430476 intron,3` UTR CG32174 -,frc - chr3L 17430518 intron,3` UTR CG32174 -,frc - chr3L 17430561 intron,3` UTR CG32174 -,frc - chr3L_5_17430001 chr3L_17430001 RAL-409_95b 802 chr3L 17492483 17492501 chr3L 17492789 17492808 4 308 1.0 0.5 0.8 2.2 325 chr3L 17492483 intron Oatp74D + chr3L 17492646 intron Oatp74D + chr3L 17492808 intron Oatp74D + chr3L_4_17490001 chr3L_17490001 RAL-409_95b 803 chr3L 17510749 17510763 chr3L 17510830 17510845 5 86 1.5 2.0 1.8 1.8 96 chr3L 17510749 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510845 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-409_95b 804 chr3L 17516965 17517008 chr3L 17524543 17524572 412 4 7574 4.5 3.5 4.0 0.8 7607 chr3L 17516965 intron CG7564 + chr3L 17520768 intron CG7564 + chr3L 17524572 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-409_95b 805 chr3L 17536593 17536607 chr3L 17536684 17536693 6 98 3.0 2.5 2.8 1.6 100 chr3L 17536593 intron Nedd4 + chr3L 17536643 intron Nedd4 + chr3L 17536693 intron Nedd4 + chr3L_6_17535001 chr3L_17535001 RAL-409_95b 806 chr3L 17612202 17612243 chr3L 17612299 17612332 5 88 1.5 1.5 1.5 2.0 130 chr3L 17612202 intron Eip74EF - chr3L 17612267 intron Eip74EF - chr3L 17612332 intron Eip74EF - chr3L_5_17610001 chr3L_17610001 RAL-409_95b 807 chr3L 17789834 17789843 chr3L 17789930 17789934 4 95 2.5 1.5 2.0 1.3 100 chr3L 17789834 intergenic not near genes chr3L 17789884 intergenic not near genes chr3L 17789934 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-409_95b 808 chr3L 17789845 17789876 chr3L 17789921 17789956 4 78 1.0 1.5 1.2 1.8 111 chr3L 17789845 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789956 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-409_95b 809 chr3L 18006240 18006248 chr3L 18006362 18006372 4 126 1.0 3.0 2.0 1.3 132 chr3L 18006240 intron Eip75B - chr3L 18006306 intron Eip75B - chr3L 18006372 intron Eip75B - chr3L_4_18005001 chr3L_18005001 RAL-409_95b 810 chr3L 18301356 18301377 chr3L 18301439 18301467 5 95 0.0 1.5 0.8 2.8 111 chr3L 18301356 intergenic CG13700 - chr3L 18301412 intergenic CG13700 - chr3L 18301467 intergenic CG13700 - chr3L_5_18300001 chr3L_18300001 RAL-409_95b 811 chr3L 18408742 18408757 chr3L 18408836 18408846 4 94 3.0 1.0 2.0 1.3 104 chr3L 18408742 intergenic not near genes chr3L 18408794 intergenic not near genes chr3L 18408846 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-409_95b 812 chr3L 18445243 18445269 chr3L 18445331 18445349 4 90 2.0 2.0 2.0 1.3 106 chr3L 18445243 intergenic not near genes chr3L 18445296 intergenic not near genes chr3L 18445349 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-409_95b 813 chr3L 18457358 18457362 chr3L 18457473 18457482 4 116 3.5 1.5 2.5 1.1 124 chr3L 18457358 3` UTR CR44671 - chr3L 18457420 3` UTR CR44671 - chr3L 18457482 3` UTR CR44671 - chr3L_4_18455001 chr3L_18455001 RAL-409_95b 814 chr3L 18464467 18464511 chr3L 18464573 18464603 4 101 2.5 2.5 2.5 1.1 136 chr3L 18464467 intergenic not near genes chr3L 18464535 intergenic not near genes chr3L 18464603 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-409_95b 815 chr3L 18546706 18546737 chr3L 18546801 18546824 6 92 2.5 3.0 2.8 1.6 118 chr3L 18546706 intergenic not near genes chr3L 18546765 intergenic not near genes chr3L 18546824 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-409_95b 816 chr3L 18581334 18581361 chr3L 18581415 18581431 4 86 1.5 1.0 1.2 1.8 97 chr3L 18581334 intergenic not near genes chr3L 18581382 intergenic not near genes chr3L 18581431 intergenic not near genes chr3L_4_18580001 chr3L_18580001 RAL-409_95b 817 chr3L 18593950 18593976 chr3L 18595943 18595952 Doc 4 1983 2.5 0.5 1.5 1.6 2002 chr3L 18593950 intergenic term - chr3L 18594951 intergenic not near genes chr3L 18595952 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-409_95b 818 chr3L 18634628 18634657 chr3L 18634713 18634747 6 86 0.5 2.5 1.5 2.4 119 chr3L 18634628 intron MYPT-75D + chr3L 18634688 intron MYPT-75D + chr3L 18634747 intron MYPT-75D + chr3L_6_18630001 chr3L_18630001 RAL-409_95b 819 chr3L 18679660 18679704 chr3L 18679785 18679806 7 113 5.0 3.0 4.0 1.4 146 chr3L 18679660 intergenic not near genes chr3L 18679733 intergenic not near genes chr3L 18679806 intergenic not near genes chr3L_7_18675001 chr3L_18675001 RAL-409_95b 820 chr3L 18710760 18710790 chr3L 18718710 18718749 Stalker2 6 7962 2.0 1.5 1.8 2.1 7989 chr3L 18710760 intergenic not near genes chr3L 18714754 intergenic not near genes chr3L 18718749 intergenic not near genes chr3L_6_18710001 chr3L_18710001 RAL-409_95b 821 chr3L 18721770 18721804 chr3L 18721866 18721895 4 90 1.5 1.0 1.2 1.8 125 chr3L 18721770 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-409_95b 822 chr3L 18761942 18761971 chr3L 18762040 18762053 7 95 2.0 4.0 3.0 1.8 111 chr3L 18761942 intron ftz-f1 - chr3L 18761998 intron ftz-f1 - chr3L 18762053 intron ftz-f1 - chr3L_7_18760001 chr3L_18760001 RAL-409_95b 823 chr3L 18772397 18772425 chr3L 18781098 18781126 roo 5 8700 3.5 4.0 3.8 1.0 8729 chr3L 18772397 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781126 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-409_95b 824 chr3L 18928292 18928340 chr3L 18928399 18928447 8 101 2.0 2.5 2.2 2.5 155 chr3L 18928292 intron CG32204 - chr3L 18928370 intron CG32204 - chr3L 18928447 intron CG32204 - chr3L_8_18925001 chr3L_18925001 RAL-409_95b 825 chr3L 18932276 18932303 chr3L 18932402 18932409 8 110 2.5 4.0 3.2 1.9 133 chr3L 18932276 intron CG32204 - chr3L 18932342 intron CG32204 - chr3L 18932409 intron CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-409_95b 826 chr3L 18935821 18935859 chr3L 18935930 18935968 6 100 0.5 1.5 1.0 3.0 147 chr3L 18935821 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935968 intron CG32204 - chr3L_6_18935001 chr3L_18935001 RAL-409_95b 827 chr3L 18941185 18941205 chr3L 18941292 18941333 10 119 2.5 3.5 3.0 2.5 148 chr3L 18941185 intron CG32204 - chr3L 18941259 intron CG32204 - chr3L 18941333 intron CG32204 - chr3L_10_18940001 chr3L_18940001 RAL-409_95b 828 chr3L 18972389 18972426 chr3L 18972469 18972493 12 82 4.0 4.0 4.0 2.4 104 chr3L 18972389 intergenic not near genes chr3L 18972441 intergenic not near genes chr3L 18972493 intergenic not near genes chr3L_12_18970001 chr3L_18970001 RAL-409_95b 829 chr3L 19117055 19117076 chr3L 19124488 19124524 mdg1 11 7446 3.5 4.0 3.8 2.3 7469 chr3L 19117055 intron CG14082 - chr3L 19120790 intron CG14082 - chr3L 19124524 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-409_95b 830 chr3L 19200246 19200270 chr3L 19200385 19200414 4 146 3.5 1.5 2.5 1.1 168 chr3L 19200246 intron fz2 - chr3L 19200330 intron fz2 - chr3L 19200414 intron fz2 - chr3L_4_19200001 chr3L_19200001 RAL-409_95b 831 chr3L 19208068 19208088 chr3L 19209435 19209447 Doc 6 1378 3.5 0.5 2.0 2.0 1379 chr3L 19208068 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209447 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-409_95b 832 chr3L 19282268 19282297 chr3L 19282360 19282390 8 99 2.0 2.5 2.2 2.5 122 chr3L 19282268 3` UTR Gbs-76A - chr3L 19282329 3` UTR Gbs-76A - chr3L 19282390 3` UTR Gbs-76A - chr3L_8_19280001 chr3L_19280001 RAL-409_95b 833 chr3L 19426763 19426781 chr3L 19426831 19426839 7 70 1.5 4.5 3.0 1.8 76 chr3L 19426763 intergenic not near genes chr3L 19426801 intergenic not near genes chr3L 19426839 intergenic not near genes chr3L_7_19425001 chr3L_19425001 RAL-409_95b 834 chr3L 19488481 19488501 chr3L 19488566 19488579 4 86 2.5 1.0 1.8 1.4 98 chr3L 19488481 intergenic pncr009:3L -,CG32212 + chr3L 19488530 intergenic pncr009:3L -,CG32212 + chr3L 19488579 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-409_95b 835 chr3L 19848509 19848525 chr3L 19857701 19857711 roo 6 9195 3.0 0.5 1.8 2.1 9202 chr3L 19848509 intron Papss + chr3L 19853110 intron Papss + chr3L 19857711 intron Papss + chr3L_6_19850001 chr3L_19850001 RAL-409_95b 836 chr3L 19861808 19861849 chr3L 19863616 19863620 S-element 4 1795 4.5 3.5 4.0 0.8 1812 chr3L 19861808 5` UTR CR45433 + chr3L 19862714 intergenic not near genes chr3L 19863620 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-409_95b 837 chr3L 19933519 19933552 chr3L 19934361 19934381 4 831 6.5 1.0 3.8 0.8 862 chr3L 19933519 intergenic CR45678 + chr3L 19933950 5` UTR CR45678 + chr3L 19934381 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-409_95b 838 chr3L 19981184 19981226 chr3L 19981284 19981303 6 88 1.0 1.5 1.2 2.7 119 chr3L 19981184 intergenic CG17732 + chr3L 19981244 intergenic CG17732 + chr3L 19981303 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-409_95b 839 chr3L 20038816 20038848 chr3L 20038999 20039013 4 182 1.5 1.5 1.5 1.6 197 chr3L 20038816 intergenic not near genes chr3L 20038914 intergenic not near genes chr3L 20039013 intergenic not near genes chr3L_4_20035001 chr3L_20035001 RAL-409_95b 840 chr3L 20143060 20143109 chr3L 20143160 20143197 5 97 4.5 2.0 3.2 1.2 137 chr3L 20143060 intergenic not near genes chr3L 20143128 intergenic not near genes chr3L 20143197 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-409_95b 841 chr3L 20148296 20148309 chr3L 20148382 20148399 4 88 3.0 4.0 3.5 0.9 103 chr3L 20148296 intergenic not near genes chr3L 20148348 intergenic not near genes chr3L 20148399 intergenic not near genes chr3L_4_20145001 chr3L_20145001 RAL-409_95b 842 chr3L 20257333 20257361 chr3L 20258452 20258477 pogo 7 1124 0.5 4.0 2.2 2.2 1144 chr3L 20257333 intron rdgC + chr3L 20257905 intron rdgC + chr3L 20258477 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-409_95b 843 chr3L 20283658 20283705 chr3L 20283762 20283803 15 96 3.0 1.5 2.2 4.7 145 chr3L 20283658 intron gogo - chr3L 20283730 intron gogo - chr3L 20283803 intron gogo - chr3L_15_20280001 chr3L_20280001 RAL-409_95b 844 chr3L 20315664 20315683 chr3L 20315735 20315781 6 80 0.5 2.5 1.5 2.4 117 chr3L 20315664 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315722 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315781 3` UTR,intron alphaSnap +,CR43875 - chr3L_6_20315001 chr3L_20315001 RAL-409_95b 845 chr3L 20405582 20405610 chr3L 20405667 20405685 7 87 1.5 3.0 2.2 2.2 103 chr3L 20405582 intergenic not near genes chr3L 20405634 intergenic not near genes chr3L 20405685 intergenic not near genes chr3L_7_20405001 chr3L_20405001 RAL-409_95b 846 chr3L 20409888 20409912 chr3L 20409976 20409990 4 91 1.5 2.0 1.8 1.4 102 chr3L 20409888 intron CG13248 - chr3L 20409939 intron CG13248 - chr3L 20409990 intron CG13248 - chr3L_4_20405001 chr3L_20405001 RAL-409_95b 847 chr3L 20476755 20476786 chr3L 20484351 20484387 springer 5 7604 2.0 3.5 2.8 1.3 7632 chr3L 20476755 3` UTR isoQC + chr3L 20480571 intergenic not near genes chr3L 20484387 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-409_95b 848 chr3L 20505224 20505253 chr3L 20508536 20508544 4 3304 27.0 16.0 21.5 0.2 3320 chr3L 20505224 intron,exon CG32425 +,CG17637 + chr3L 20506884 intron,exon CG32425 +,CG5078 + chr3L 20508544 intron CG32425 + chr3L_4_20505001 chr3L_20505001 RAL-409_95b 849 chr3L 20699896 20699929 chr3L 20699981 20700026 7 85 2.0 4.0 3.0 1.8 130 chr3L 20699896 intergenic not near genes chr3L 20699961 intergenic not near genes chr3L 20700026 intergenic not near genes chr3L_7_20695001 chr3L_20695001 RAL-409_95b 850 chr3L 20821279 20821302 chr3L 20824895 20824923 NOF 6 3623 3.0 1.5 2.2 1.9 3644 chr3L 20821279 intron Pka-R1 + chr3L 20823101 intron Pka-R1 + chr3L 20824923 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-409_95b 851 chr3L 20849251 20849289 chr3L 20849350 20849380 5 95 2.5 1.5 2.0 1.7 129 chr3L 20849251 intron CG32432 - chr3L 20849316 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-409_95b 852 chr3L 20883783 20883796 chr3L 20883899 20883938 5 132 2.5 5.0 3.8 1.0 155 chr3L 20883783 intron CG32432 - chr3L 20883860 intron CG32432 - chr3L 20883938 intron CG32432 - chr3L_5_20880001 chr3L_20880001 RAL-409_95b 853 chr3L 20917089 20917109 chr3L 20917168 20917206 9 84 2.5 4.0 3.2 2.1 117 chr3L 20917089 intergenic not near genes chr3L 20917148 intergenic not near genes chr3L 20917206 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-409_95b 854 chr3L 21010353 21010395 chr3L 21010479 21010498 6 117 3.0 1.5 2.2 1.9 145 chr3L 21010353 intron skd - chr3L 21010426 intron skd - chr3L 21010498 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-409_95b 855 chr3L 21151866 21151892 chr3L 21156956 21156979 flea 4 5092 1.5 1.5 1.5 1.6 5113 chr3L 21151866 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-409_95b 856 chr3L 21210244 21210260 chr3L 21210507 21210524 4 260 1.0 1.0 1.0 2.0 280 chr3L 21210244 5` UTR CG10508 + chr3L 21210384 5` UTR CG10508 + chr3L 21210524 5` UTR CG10508 + chr3L_4_21210001 chr3L_21210001 RAL-409_95b 857 chr3L 21407004 21407023 chr3L 21407078 21407100 4 76 1.0 2.0 1.5 1.6 96 chr3L 21407004 intron rgn + chr3L 21407052 intron rgn + chr3L 21407100 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-409_95b 858 chr3L 21467393 21467397 chr3L 21467520 21467542 9 127 14.0 21.0 17.5 0.5 149 chr3L 21467393 intergenic not near genes chr3L 21467468 intergenic not near genes chr3L 21467542 intergenic not near genes chr3L_9_21465001 chr3L_21465001 RAL-409_95b 859 chr3L 21637321 21637348 chr3L 21637413 21637436 10 98 3.0 2.0 2.5 2.9 115 chr3L 21637321 intron CG32444 + chr3L 21637378 intron CG32444 + chr3L 21637436 intron CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-409_95b 860 chr3L 21749298 21749343 chr3L 21754477 21754504 Doc 6 5168 2.5 1.0 1.8 2.1 5206 chr3L 21749298 intron Syn1 - chr3L 21751901 intron Syn1 - chr3L 21754504 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-409_95b 861 chr3L 21769053 21769082 chr3L 21769150 21769189 4 101 3.0 2.5 2.8 1.1 136 chr3L 21769053 intron,intron Syn1 -,CG42689 + chr3L 21769121 intron,intron Syn1 -,CG42689 + chr3L 21769189 intron,intron Syn1 -,CG42689 + chr3L_4_21765001 chr3L_21765001 RAL-409_95b 862 chr3L 21840846 21840857 chr3L 21840967 21840978 4 124 9.0 8.5 8.8 0.4 132 chr3L 21840846 intron P5CDh1 - chr3L 21840912 intron P5CDh1 - chr3L 21840978 intron P5CDh1 - chr3L_4_21840001 chr3L_21840001 RAL-409_95b 863 chr3L 22099674 22099707 chr3L 22105866 22105913 3S18 5 6196 3.5 1.5 2.5 1.4 6239 chr3L 22099674 intergenic not near genes chr3L 22102794 intergenic not near genes chr3L 22105913 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-409_95b 864 chr3L 22169475 22169489 chr3L 22169556 22169578 5 93 4.0 2.0 3.0 1.2 103 chr3L 22169475 intron olf413 + chr3L 22169526 intron olf413 + chr3L 22169578 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-409_95b 865 chr3L 22577631 22577647 chr3L 22582405 22582447 Doc 4 4787 2.0 4.5 3.2 1.0 4816 chr3L 22577631 intergenic not near genes chr3L 22580039 intergenic not near genes chr3L 22582447 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-409_95b 866 chr3L 22587209 22587244 chr3L 22587310 22587360 5 111 3.0 3.5 3.2 1.2 151 chr3L 22587209 intron CG14459 - chr3L 22587284 intron CG14459 - chr3L 22587360 intron CG14459 - chr3L_5_22585001 chr3L_22585001 RAL-409_95b 867 chr3L 22617182 22617210 chr3L 22624640 22624654 blood 7 7461 5.0 2.5 3.8 1.5 7472 chr3L 22617182 intron CG14459 - chr3L 22620918 intron CG14459 - chr3L 22624654 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-409_95b 868 chr3L 22659040 22659087 chr3L 22659137 22659185 9 86 2.0 2.0 2.0 3.0 145 chr3L 22659040 intergenic not near genes chr3L 22659112 intergenic not near genes chr3L 22659185 intergenic not near genes chr3L_9_22655001 chr3L_22655001 RAL-409_95b 869 chr3L 22797334 22797367 chr3L 22797422 22797454 4 90 2.5 1.5 2.0 1.3 120 chr3L 22797334 3` UTR jim - chr3L 22797394 3` UTR jim - chr3L 22797454 3` UTR jim - chr3L_4_22795001 chr3L_22795001 RAL-409_95b 870 chr3L 22853468 22853723 chr3L 22853556 22853810 14 90 1.0 5.0 3.0 3.5 342 chr3L 22853468 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853639 5` UTR CR43426 + chr3L 22853810 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-409_95b 871 chr3L 22865970 22866011 chr3L 22867123 22867123 Doc 7 1140 1.0 3.5 2.2 2.2 1153 chr3L 22865970 intron CG33170 + chr3L 22866546 intron CG33170 + chr3L 22867123 intron CG33170 + chr3L_7_22865001 chr3L_22865001 RAL-409_95b 872 chr3L 22936699 22936706 chr3L 22938144 22938176 5 1460 25.0 19.5 22.2 0.2 1477 chr3L 22936699 intergenic not near genes chr3L 22937438 intergenic not near genes chr3L 22938176 intergenic not near genes chr3L_5_22935001 chr3L_22935001 RAL-409_95b 873 chr3L 22980577 22980599 chr3L 22980662 22980690 6 86 3.0 2.0 2.5 1.7 113 chr3L 22980577 intergenic not near genes chr3L 22980634 intergenic not near genes chr3L 22980690 intergenic not near genes chr3L_6_22980001 chr3L_22980001 RAL-409_95b 874 chr3L 23008202 23008232 chr3L 23008273 23008304 8 77 1.5 3.5 2.5 2.3 102 chr3L 23008202 intron nrm + chr3L 23008253 intron nrm + chr3L 23008304 intron nrm + chr3L_8_23005001 chr3L_23005001 RAL-409_95b 875 chr3L 23042232 23042255 chr3L 23048977 23049024 gypsy6 9 6757 4.5 3.5 4.0 1.8 6792 chr3L 23042232 intergenic not near genes chr3L 23045628 intergenic not near genes chr3L 23049024 intergenic not near genes chr3L_9_23045001 chr3L_23045001 RAL-409_95b 876 chr3L 23182254 23182290 chr3L 23182384 23182397 6 119 3.5 3.0 3.2 1.4 143 chr3L 23182254 intron CG34031 + chr3L 23182326 intron CG34031 + chr3L 23182397 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-409_95b 877 chr3L 23402311 23402322 chr3L 23402376 23402403 5 78 1.0 2.0 1.5 2.0 92 chr3L 23402311 intergenic not near genes chr3L 23402357 intergenic not near genes chr3L 23402403 intergenic not near genes chr3L_5_23400001 chr3L_23400001 RAL-409_95b 878 chr3L 24791886 24791925 chr3L 24796684 24796709 Doc 5 4783 1.5 0.5 1.0 2.5 4823 chr3L 24791886 intergenic not near genes chr3L 24794298 intergenic not near genes chr3L 24796709 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-409_95b 879 chr3L 28005577 28005598 chr3L 28005654 28005674 6 81 0.5 3.5 2.0 2.0 97 chr3L 28005577 intron CG17514 - chr3L 28005626 intron CG17514 - chr3L 28005674 intron CG17514 - chr3L_6_28005001 chr3L_28005001 RAL-409_95b 880 chr3R 97108 97108 chr3R 99847 99851 4 2739 4.5 1.0 2.8 1.1 2743 chr3R 97108 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99851 intergenic not near genes chr3R_4_95001 chr3R_95001 RAL-409_95b 881 chr3R 2556878 2556916 chr3R 2557594 2557644 8 727 11.0 11.0 11.0 0.7 766 chr3R 2556878 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557644 intron CG41056 - chr3R_8_2555001 chr3R_2555001 RAL-409_95b 882 chr3R 4206087 4206101 chr3R 4211646 4211663 mdg3 4 5569 5.5 2.5 4.0 0.8 5576 chr3R 4206087 intron CG14636 - chr3R 4208875 intron CG14636 - chr3R 4211663 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-409_95b 883 chr3R 4366761 4366788 chr3R 4375142 4375191 roo 8 8393 1.5 3.5 2.5 2.3 8430 chr3R 4366761 3` UTR CG1090 + chr3R 4370976 intergenic not near genes chr3R 4375191 5` UTR CR44922 + chr3R_8_4370001 chr3R_4370001 RAL-409_95b 884 chr3R 4408427 4408442 chr3R 4412723 4412750 Juan 7 4301 1.5 2.5 2.0 2.3 4323 chr3R 4408427 intron CG32944 - chr3R 4410588 intron CG32944 - chr3R 4412750 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-409_95b 885 chr3R 4609546 4609578 chr3R 4610709 4610762 1360 8 1167 3.0 5.0 4.0 1.6 1216 chr3R 4609546 intergenic not near genes chr3R 4610154 intergenic not near genes chr3R 4610762 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-409_95b 886 chr3R 4680705 4680741 chr3R 4680787 4680837 6 83 4.0 2.5 3.2 1.4 132 chr3R 4680705 intron CG43427 + chr3R 4680771 intron CG43427 + chr3R 4680837 5` UTR CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-409_95b 887 chr3R 4753242 4753258 chr3R 4757547 4757581 F-element 5 4305 4.5 7.0 5.8 0.7 4339 chr3R 4753242 intron,intron atms +,CG44098 - chr3R 4755412 intron,intron atms +,CG44098 - chr3R 4757581 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-409_95b 888 chr3R 4769157 4769191 chr3R 4769253 4769284 8 89 1.5 4.0 2.8 2.1 127 chr3R 4769157 intron,intron atms +,CG44098 - chr3R 4769220 intron,intron atms +,CG44098 - chr3R 4769284 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-409_95b 889 chr3R 4965989 4966036 chr3R 4966101 4966148 4 103 1.0 2.5 1.8 1.4 159 chr3R 4965989 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966148 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-409_95b 890 chr3R 5067985 5068014 chr3R 5073501 5073535 mdg3 4 5522 4.5 5.0 4.8 0.7 5550 chr3R 5067985 intergenic not near genes chr3R 5070760 intergenic not near genes chr3R 5073535 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-409_95b 891 chr3R 5158130 5158177 chr3R 5158236 5158290 4 104 1.0 4.0 2.5 1.1 160 chr3R 5158130 intron dpr16 + chr3R 5158210 intron dpr16 + chr3R 5158290 intron dpr16 + chr3R_4_5155001 chr3R_5155001 RAL-409_95b 892 chr3R 5191367 5191381 chr3R 5191642 5191659 5 273 14.0 16.5 15.2 0.3 292 chr3R 5191367 intron cno - chr3R 5191513 intron cno - chr3R 5191659 intron cno - chr3R_5_5190001 chr3R_5190001 RAL-409_95b 893 chr3R 5338382 5338402 chr3R 5343579 5343591 Rt1c 5 5192 12.5 7.5 10.0 0.5 5209 chr3R 5338382 intron mtd - chr3R 5340986 intron mtd - chr3R 5343591 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-409_95b 894 chr3R 5338405 5338426 chr3R 5343569 5343623 Rt1c 4 5184 8.5 5.5 7.0 0.5 5218 chr3R 5338405 intron mtd - chr3R 5341014 intron mtd - chr3R 5343623 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-409_95b 895 chr3R 5578773 5578819 chr3R 5578868 5578908 7 86 4.0 2.0 3.0 1.8 135 chr3R 5578773 3` UTR CRMP + chr3R 5578840 3` UTR CRMP + chr3R 5578908 3` UTR CRMP + chr3R_7_5575001 chr3R_5575001 RAL-409_95b 896 chr3R 5712077 5712114 chr3R 5712169 5712200 5 93 2.0 1.0 1.5 2.0 123 chr3R 5712077 3` UTR plx + chr3R 5712138 3` UTR plx + chr3R 5712200 3` UTR plx + chr3R_5_5710001 chr3R_5710001 RAL-409_95b 897 chr3R 5746020 5746045 chr3R 5746280 5746288 pogo 6 250 3.5 8.0 5.8 0.9 268 chr3R 5746020 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746288 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-409_95b 898 chr3R 5747008 5747044 chr3R 5753205 5753236 diver 6 6198 3.0 1.5 2.2 1.9 6228 chr3R 5747008 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_6_5750001 chr3R_5750001 RAL-409_95b 899 chr3R 5822383 5822413 chr3R 5823554 5823576 1360 7 1167 2.0 3.0 2.5 2.0 1193 chr3R 5822383 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-409_95b 900 chr3R 5895970 5895983 chr3R 5896193 5896202 4 227 0.5 2.5 1.5 1.6 232 chr3R 5895970 intron CG34113 - chr3R 5896086 intron CG34113 - chr3R 5896202 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-409_95b 901 chr3R 5927566 5927571 chr3R 5927811 5927811 pogo 4 244 7.0 6.0 6.5 0.5 245 chr3R 5927566 intron CG34113 - chr3R 5927688 intron CG34113 - chr3R 5927811 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-409_95b 902 chr3R 6006334 6006357 chr3R 6006420 6006445 5 92 1.5 2.5 2.0 1.7 111 chr3R 6006334 intron Rm62 - chr3R 6006390 intron Rm62 - chr3R 6006445 intron Rm62 - chr3R_5_6005001 chr3R_6005001 RAL-409_95b 903 chr3R 6048449 6048477 chr3R 6048529 6048564 10 86 3.5 1.5 2.5 2.9 115 chr3R 6048449 intergenic not near genes chr3R 6048506 intergenic not near genes chr3R 6048564 intergenic not near genes chr3R_10_6045001 chr3R_6045001 RAL-409_95b 904 chr3R 6158506 6158537 chr3R 6167092 6167118 Tirant 4 8582 1.5 1.5 1.5 1.6 8612 chr3R 6158506 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-409_95b 905 chr3R 6175179 6175187 chr3R 6182445 6182457 HMS-Beagle2 5 7276 3.5 3.0 3.2 1.2 7278 chr3R 6175179 intergenic Osi1 + chr3R 6178818 intron CR45194 + chr3R 6182457 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-409_95b 906 chr3R 6191168 6191195 chr3R 6191248 6191294 10 86 5.5 3.0 4.2 1.9 126 chr3R 6191168 intron NPFR + chr3R 6191231 intron NPFR + chr3R 6191294 intron NPFR + chr3R_10_6190001 chr3R_6190001 RAL-409_95b 907 chr3R 6330774 6330795 chr3R 6330906 6330910 4 129 1.0 3.5 2.2 1.2 136 chr3R 6330774 exon Osi18 + chr3R 6330842 intron Osi18 + chr3R 6330910 intron Osi18 + chr3R_4_6330001 chr3R_6330001 RAL-409_95b 908 chr3R 6504675 6504705 chr3R 6504781 6504813 6 115 3.0 3.0 3.0 1.5 138 chr3R 6504675 intergenic not near genes chr3R 6504744 intergenic not near genes chr3R 6504813 intergenic not near genes chr3R_6_6500001 chr3R_6500001 RAL-409_95b 909 chr3R 6538206 6538233 chr3R 6538309 6538315 5 103 1.0 0.5 0.8 2.8 109 chr3R 6538206 intron dpr11 - chr3R 6538260 intron dpr11 - chr3R 6538315 exon dpr11 - chr3R_5_6535001 chr3R_6535001 RAL-409_95b 910 chr3R 6773768 6773782 chr3R 6773836 6773853 5 76 1.0 0.5 0.8 2.8 85 chr3R 6773768 intron CR42721 + chr3R 6773810 intron CR42721 + chr3R 6773853 intron CR42721 + chr3R_5_6770001 chr3R_6770001 RAL-409_95b 911 chr3R 6816695 6816729 chr3R 6817011 6817043 4 318 8.0 7.0 7.5 0.5 348 chr3R 6816695 intergenic CR42651 - chr3R 6816869 intergenic not near genes chr3R 6817043 intergenic not near genes chr3R_4_6815001 chr3R_6815001 RAL-409_95b 912 chr3R 6991162 6991194 chr3R 6991258 6991266 4 90 3.5 1.0 2.2 1.2 104 chr3R 6991162 intron Antp - chr3R 6991214 intron Antp - chr3R 6991266 intron Antp - chr3R_4_6990001 chr3R_6990001 RAL-409_95b 913 chr3R 7026877 7026888 chr3R 7026941 7026967 4 82 1.5 2.0 1.8 1.4 90 chr3R 7026877 intergenic not near genes chr3R 7026922 intergenic not near genes chr3R 7026967 intergenic not near genes chr3R_4_7025001 chr3R_7025001 RAL-409_95b 914 chr3R 7092786 7092814 chr3R 7093349 7093382 13 566 2.0 4.5 3.2 3.1 596 chr3R 7092786 3` UTR CR43685 - chr3R 7093084 intron CR43685 - chr3R 7093382 3` UTR CR43685 - chr3R_13_7090001 chr3R_7090001 RAL-409_95b 915 chr3R 7103292 7103306 chr3R 7103372 7103385 4 83 2.5 4.0 3.2 1.0 93 chr3R 7103292 intron Alh - chr3R 7103338 intron Alh - chr3R 7103385 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-409_95b 916 chr3R 7404944 7404969 chr3R 7405021 7405064 7 82 0.0 1.5 0.8 3.9 120 chr3R 7404944 intergenic not near genes chr3R 7405004 intergenic not near genes chr3R 7405064 intergenic not near genes chr3R_7_7400001 chr3R_7400001 RAL-409_95b 917 chr3R 7548586 7548627 chr3R 7548681 7548699 8 88 1.5 1.5 1.5 3.2 113 chr3R 7548586 intron alpha-Est1 - chr3R 7548642 intron alpha-Est1 - chr3R 7548699 intron alpha-Est1 - chr3R_8_7545001 chr3R_7545001 RAL-409_95b 918 chr3R 7621531 7621562 chr3R 7621638 7621671 6 100 0.5 1.5 1.0 3.0 140 chr3R 7621531 intron CG34127 - chr3R 7621601 intron CG34127 - chr3R 7621671 intron CG34127 - chr3R_6_7620001 chr3R_7620001 RAL-409_95b 919 chr3R 7627166 7627210 chr3R 7627281 7627319 5 104 3.5 1.5 2.5 1.4 153 chr3R 7627166 intron,3` UTR CG34127 -,CR44332 - chr3R 7627242 intron,3` UTR CG34127 -,CR44332 - chr3R 7627319 intron CG34127 - chr3R_5_7625001 chr3R_7625001 RAL-409_95b 920 chr3R 7729447 7729493 chr3R 7737404 7737442 Stalker2 8 7949 2.0 2.5 2.2 2.5 7995 chr3R 7729447 intergenic not near genes chr3R 7733444 intergenic not near genes chr3R 7737442 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-409_95b 921 chr3R 7819864 7819904 chr3R 7822068 7822108 11 2199 4.0 7.5 5.8 1.6 2244 chr3R 7819864 intron CG34384 + chr3R 7820986 intron CG34384 + chr3R 7822108 intron CG34384 + chr3R_11_7820001 chr3R_7820001 RAL-409_95b 922 chr3R 7819926 7819962 chr3R 7822949 7822973 9 3016 7.0 23.5 15.2 0.6 3047 chr3R 7819926 intron CG34384 + chr3R 7821450 intron CG34384 + chr3R 7822973 intron CG34384 + chr3R_9_7820001 chr3R_7820001 RAL-409_95b 923 chr3R 7823942 7823968 chr3R 7824027 7824054 6 86 3.5 2.0 2.8 1.6 112 chr3R 7823942 intron CG34384 + chr3R 7823998 intron CG34384 + chr3R 7824054 intron CG34384 + chr3R_6_7820001 chr3R_7820001 RAL-409_95b 924 chr3R 7849659 7849676 chr3R 7850825 7850838 1360 4 1168 3.5 8.5 6.0 0.6 1179 chr3R 7849659 intron CG34384 + chr3R 7850248 intron CG34384 + chr3R 7850838 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-409_95b 925 chr3R 7948445 7948459 chr3R 7948526 7948555 6 89 4.5 4.0 4.2 1.2 110 chr3R 7948445 intron dsx - chr3R 7948500 intron dsx - chr3R 7948555 intron dsx - chr3R_6_7945001 chr3R_7945001 RAL-409_95b 926 chr3R 7955927 7955960 chr3R 7956018 7956039 10 82 2.0 2.5 2.2 3.1 112 chr3R 7955927 intron dsx - chr3R 7955983 intron dsx - chr3R 7956039 intron dsx - chr3R_10_7955001 chr3R_7955001 RAL-409_95b 927 chr3R 8049049 8049053 chr3R 8049627 8049646 4 582 6.0 6.5 6.2 0.6 597 chr3R 8049049 intron CG43060 + chr3R 8049348 intron,exon CG43060 +,CG43618 + chr3R 8049646 intron CG43060 + chr3R_4_8045001 chr3R_8045001 RAL-409_95b 928 chr3R 8049055 8049061 chr3R 8049625 8049636 4 573 6.0 6.5 6.2 0.6 581 chr3R 8049055 intron CG43060 + chr3R 8049346 intron,intron CG43060 +,CG43618 + chr3R 8049636 intron CG43060 + chr3R_4_8045001 chr3R_8045001 RAL-409_95b 929 chr3R 8090552 8090564 chr3R 8094042 8094043 297 4 3491 4.5 7.0 5.8 0.6 3491 chr3R 8090552 intergenic CR44330 + chr3R 8092298 intergenic not near genes chr3R 8094043 intergenic CG7900 + chr3R_4_8090001 chr3R_8090001 RAL-409_95b 930 chr3R 8094392 8094426 chr3R 8099717 8099741 Transpac 4 5317 2.5 3.0 2.8 1.1 5349 chr3R 8094392 intron CG7900 + chr3R 8097066 intron CG7900 + chr3R 8099741 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-409_95b 931 chr3R 8101769 8101783 chr3R 8104873 8104886 G2 4 3104 2.5 4.0 3.2 1.0 3117 chr3R 8101769 exon CG7900 + chr3R 8103328 intron CG7900 + chr3R 8104886 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-409_95b 932 chr3R 8107374 8107419 chr3R 8107527 8107550 5 145 1.5 1.0 1.2 2.3 176 chr3R 8107374 intron puc + chr3R 8107462 intron puc + chr3R 8107550 intron puc + chr3R_5_8105001 chr3R_8105001 RAL-409_95b 933 chr3R 8207579 8207585 chr3R 8208398 8208433 F-element 4 836 1.0 2.0 1.5 1.6 854 chr3R 8207579 intergenic not near genes chr3R 8208006 intergenic not near genes chr3R 8208433 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-409_95b 934 chr3R 8304253 8304274 chr3R 8304347 8304389 4 100 2.0 2.5 2.2 1.2 136 chr3R 8304253 3` UTR Sgt1 - chr3R 8304321 3` UTR Sgt1 - chr3R 8304389 3` UTR Sgt1 - chr3R_4_8300001 chr3R_8300001 RAL-409_95b 935 chr3R 8402995 8403034 chr3R 8412175 8412195 roo 9 9172 3.5 3.0 3.2 2.1 9200 chr3R 8402995 intron CG45263 - chr3R 8407595 intron CG45263 - chr3R 8412195 intron CG45263 - chr3R_9_8405001 chr3R_8405001 RAL-409_95b 936 chr3R 8412434 8412458 chr3R 8412570 8412578 5 128 4.0 3.5 3.8 1.0 144 chr3R 8412434 intron CG45263 - chr3R 8412506 intron CG45263 - chr3R 8412578 intron CG45263 - chr3R_5_8410001 chr3R_8410001 RAL-409_95b 937 chr3R 8541329 8541369 chr3R 8541421 8541453 13 82 2.5 4.0 3.2 3.1 124 chr3R 8541329 intergenic not near genes chr3R 8541391 intergenic not near genes chr3R 8541453 intergenic not near genes chr3R_13_8540001 chr3R_8540001 RAL-409_95b 938 chr3R 8570458 8570510 chr3R 8575114 8575159 HMS-Beagle 8 4642 2.0 2.0 2.0 2.7 4701 chr3R 8570458 intergenic not near genes chr3R 8572808 intergenic not near genes chr3R 8575159 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-409_95b 939 chr3R 8601789 8601799 chr3R 8610933 8610967 roo 7 9157 2.0 5.0 3.5 1.6 9178 chr3R 8601789 intron 5-HT2B + chr3R 8606378 intron 5-HT2B + chr3R 8610967 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-409_95b 940 chr3R 8707341 8707382 chr3R 8709798 8709843 jockey 9 2451 1.0 2.5 1.8 3.2 2502 chr3R 8707341 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709843 intergenic not near genes chr3R_9_8705001 chr3R_8705001 RAL-409_95b 941 chr3R 8744820 8744861 chr3R 8744920 8744925 7 83 1.0 4.0 2.5 2.0 105 chr3R 8744820 intron CG9801 - chr3R 8744872 intron CG9801 - chr3R 8744925 intron CG9801 - chr3R_7_8740001 chr3R_8740001 RAL-409_95b 942 chr3R 8877159 8877205 chr3R 8877259 8877279 9 90 2.5 2.0 2.2 2.8 120 chr3R 8877159 intron pyd - chr3R 8877219 intron pyd - chr3R 8877279 intron pyd - chr3R_9_8875001 chr3R_8875001 RAL-409_95b 943 chr3R 8894880 8894901 chr3R 8896038 8896056 1360 8 1162 3.5 6.0 4.8 1.4 1176 chr3R 8894880 intron pyd - chr3R 8895468 intron pyd - chr3R 8896056 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-409_95b 944 chr3R 8973176 8973203 chr3R 8973262 8973311 7 93 5.0 3.5 4.2 1.3 135 chr3R 8973176 intergenic not near genes chr3R 8973244 intergenic not near genes chr3R 8973311 intergenic not near genes chr3R_7_8970001 chr3R_8970001 RAL-409_95b 945 chr3R 9108851 9108884 chr3R 9108947 9108958 5 88 1.5 1.5 1.5 2.0 107 chr3R 9108851 intron pum - chr3R 9108904 intron pum - chr3R 9108958 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-409_95b 946 chr3R 9118857 9118896 chr3R 9119232 9119237 5 359 1.0 1.5 1.2 2.3 380 chr3R 9118857 intron pum - chr3R 9119047 intron pum - chr3R 9119237 intron pum - chr3R_5_9115001 chr3R_9115001 RAL-409_95b 947 chr3R 9204251 9204534 chr3R 9204334 9204631 7 94 4.0 2.0 3.0 1.8 380 chr3R 9204251 intron pum - chr3R 9204441 intron pum - chr3R 9204631 intron pum - chr3R_7_9200001 chr3R_9200001 RAL-409_95b 948 chr3R 9204539 9204552 chr3R 9204641 9204648 5 107 3.0 5.5 4.2 1.0 109 chr3R 9204539 intron pum - chr3R 9204594 intron pum - chr3R 9204648 intron pum - chr3R_5_9200001 chr3R_9200001 RAL-409_95b 949 chr3R 9278784 9278806 chr3R 9284043 9284076 Rt1a 9 5263 1.5 7.5 4.5 1.6 5292 chr3R 9278784 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284076 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-409_95b 950 chr3R 9319557 9319604 chr3R 9320011 9320051 jockey 6 442 3.0 7.0 5.0 1.0 494 chr3R 9319557 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320051 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-409_95b 951 chr3R 9361811 9361831 chr3R 9362072 9362092 pogo 4 254 1.0 0.5 0.8 2.2 281 chr3R 9361811 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362092 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-409_95b 952 chr3R 9382799 9382847 chr3R 9382943 9382969 7 131 0.5 1.5 1.0 3.5 170 chr3R 9382799 intron FER - chr3R 9382884 intron FER - chr3R 9382969 intron FER - chr3R_7_9380001 chr3R_9380001 RAL-409_95b 953 chr3R 9880178 9880212 chr3R 9883272 9883289 5 3093 17.0 11.0 14.0 0.3 3111 chr3R 9880178 intron Glut4EF + chr3R 9881734 intron Glut4EF + chr3R 9883289 intron Glut4EF + chr3R_5_9880001 chr3R_9880001 RAL-409_95b 954 chr3R 9891471 9891482 chr3R 9891603 9891625 4 136 1.0 0.0 0.5 2.7 154 chr3R 9891471 intron Glut4EF + chr3R 9891548 intron Glut4EF + chr3R 9891625 intron Glut4EF + chr3R_4_9890001 chr3R_9890001 RAL-409_95b 955 chr3R 9926235 9926260 chr3R 9926314 9926354 4 90 1.5 2.0 1.8 1.4 119 chr3R 9926235 intron Glut4EF + chr3R 9926294 intron Glut4EF + chr3R 9926354 intron Glut4EF + chr3R_4_9925001 chr3R_9925001 RAL-409_95b 956 chr3R 10037636 10037684 chr3R 10037738 10037763 7 91 3.5 1.0 2.2 2.2 127 chr3R 10037636 intron Mical - chr3R 10037700 intron Mical - chr3R 10037763 intron Mical - chr3R_7_10035001 chr3R_10035001 RAL-409_95b 957 chr3R 10151075 10151085 chr3R 10151163 10151165 6 90 6.0 3.0 4.5 1.1 90 chr3R 10151075 intron Invadolysin + chr3R 10151120 intron Invadolysin + chr3R 10151165 intron,exon Invadolysin +,CG34303 - chr3R_6_10150001 chr3R_10150001 RAL-409_95b 958 chr3R 10151086 10151120 chr3R 10151162 10151197 9 82 5.5 3.0 4.2 1.7 111 chr3R 10151086 intron Invadolysin + chr3R 10151142 intron Invadolysin + chr3R 10151197 intron,exon Invadolysin +,CG34303 - chr3R_9_10150001 chr3R_10150001 RAL-409_95b 959 chr3R 10174101 10174157 chr3R 10174203 10174248 6 95 2.5 3.0 2.8 1.6 147 chr3R 10174101 intron CG12814 - chr3R 10174174 intron CG12814 - chr3R 10174248 intron CG12814 - chr3R_6_10170001 chr3R_10170001 RAL-409_95b 960 chr3R 10183103 10183106 chr3R 10183180 10183203 4 88 2.5 0.5 1.5 1.6 100 chr3R 10183103 intron CG12814 - chr3R 10183153 intron CG12814 - chr3R 10183203 intron CG12814 - chr3R_4_10180001 chr3R_10180001 RAL-409_95b 961 chr3R 10594576 10594624 chr3R 10594681 10594729 16 93 2.0 2.0 2.0 5.3 153 chr3R 10594576 intron hth - chr3R 10594652 intron hth - chr3R 10594729 intron hth - chr3R_16_10590001 chr3R_10590001 RAL-409_95b 962 chr3R 10727647 10727677 chr3R 10727723 10727755 9 80 3.0 5.0 4.0 1.8 108 chr3R 10727647 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727755 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-409_95b 963 chr3R 10732843 10732872 chr3R 10732930 10732937 7 84 2.5 5.5 4.0 1.4 94 chr3R 10732843 intergenic not near genes chr3R 10732890 intergenic not near genes chr3R 10732937 intergenic not near genes chr3R_7_10730001 chr3R_10730001 RAL-409_95b 964 chr3R 10785814 10785842 chr3R 10785890 10785930 5 79 1.5 1.5 1.5 2.0 116 chr3R 10785814 intron Rbp1 + chr3R 10785872 intron Rbp1 + chr3R 10785930 intron Rbp1 + chr3R_5_10785001 chr3R_10785001 RAL-409_95b 965 chr3R 10804182 10804207 chr3R 10811710 10811737 17.6 4 7540 1.5 1.0 1.2 1.8 7555 chr3R 10804182 intergenic CG14692 - chr3R 10807960 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-409_95b 966 chr3R 10919691 10919716 chr3R 10919767 10919795 8 83 4.0 3.0 3.5 1.8 104 chr3R 10919691 intergenic not near genes chr3R 10919743 intergenic not near genes chr3R 10919795 intergenic not near genes chr3R_8_10915001 chr3R_10915001 RAL-409_95b 967 chr3R 10920054 10920072 chr3R 10920133 10920170 6 88 1.5 3.0 2.2 1.9 116 chr3R 10920054 intergenic not near genes chr3R 10920112 intergenic not near genes chr3R 10920170 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-409_95b 968 chr3R 10944217 10944259 chr3R 10944324 10944369 5 105 1.5 0.5 1.0 2.5 152 chr3R 10944217 intergenic not near genes chr3R 10944293 intergenic not near genes chr3R 10944369 intergenic not near genes chr3R_5_10940001 chr3R_10940001 RAL-409_95b 969 chr3R 11048279 11048307 chr3R 11048440 11048490 5 168 2.0 1.0 1.5 2.0 211 chr3R 11048279 3` UTR CG34114 + chr3R 11048384 3` UTR CG34114 + chr3R 11048490 3` UTR CG34114 + chr3R_5_11045001 chr3R_11045001 RAL-409_95b 970 chr3R 11151679 11151693 chr3R 11156576 11156586 4 4891 19.0 4.0 11.5 0.3 4907 chr3R 11151679 3` UTR Ugt86Di - chr3R 11154132 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156586 intergenic Ugt86Dc + chr3R_4_11150001 chr3R_11150001 RAL-409_95b 971 chr3R 11174575 11174606 chr3R 11175306 11175340 4 728 13.5 12.5 13.0 0.3 765 chr3R 11174575 exon Ugt86Dj - chr3R 11174958 intron Ugt86Dj - chr3R 11175340 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-409_95b 972 chr3R 11197978 11198012 chr3R 11198096 11198127 5 114 2.5 3.5 3.0 1.2 149 chr3R 11197978 intron cu + chr3R 11198052 intron cu + chr3R 11198127 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-409_95b 973 chr3R 11214602 11214644 chr3R 11214725 11214754 8 114 0.5 2.0 1.2 3.6 152 chr3R 11214602 intergenic ZnT86D -,RpS25 - chr3R 11214678 intergenic ZnT86D -,RpS25 - chr3R 11214754 intergenic ZnT86D -,RpS25 - chr3R_8_11210001 chr3R_11210001 RAL-409_95b 974 chr3R 11307190 11307223 chr3R 11307279 11307330 4 90 3.0 3.0 3.0 1.0 140 chr3R 11307190 intergenic not near genes chr3R 11307260 intergenic not near genes chr3R 11307330 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-409_95b 975 chr3R 11342552 11342569 chr3R 11342632 11342648 7 85 3.0 2.0 2.5 2.0 96 chr3R 11342552 intron pros + chr3R 11342600 intron pros + chr3R 11342648 intron pros + chr3R_7_11340001 chr3R_11340001 RAL-409_95b 976 chr3R 11518798 11518843 chr3R 11518909 11518932 5 94 1.5 2.0 1.8 1.8 134 chr3R 11518798 intergenic not near genes chr3R 11518865 intergenic not near genes chr3R 11518932 intergenic not near genes chr3R_5_11515001 chr3R_11515001 RAL-409_95b 977 chr3R 11694730 11694754 chr3R 11694820 11694850 6 96 3.0 3.0 3.0 1.5 120 chr3R 11694730 intergenic Fer3 - chr3R 11694790 intergenic Fer3 - chr3R 11694850 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-409_95b 978 chr3R 11834150 11834191 chr3R 11834253 11834292 7 91 4.5 4.0 4.2 1.3 142 chr3R 11834150 intron CG6959 - chr3R 11834221 intron CG6959 - chr3R 11834292 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-409_95b 979 chr3R 12022864 12022916 chr3R 12025061 12025104 pogo 9 2187 1.0 2.0 1.5 3.6 2240 chr3R 12022864 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025104 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-409_95b 980 chr3R 12080860 12080894 chr3R 12080943 12080991 8 85 5.5 4.5 5.0 1.3 131 chr3R 12080860 intron CG14741 - chr3R 12080926 intron CG14741 - chr3R 12080991 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-409_95b 981 chr3R 12097241 12097272 chr3R 12097345 12097376 14 110 1.5 1.5 1.5 5.6 135 chr3R 12097241 intron dpr17 + chr3R 12097308 intron dpr17 + chr3R 12097376 intron dpr17 + chr3R_14_12095001 chr3R_12095001 RAL-409_95b 982 chr3R 12392888 12393102 chr3R 12392991 12393180 14 96 6.0 6.0 6.0 2.0 292 chr3R 12392888 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393034 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393180 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_14_12390001 chr3R_12390001 RAL-409_95b 983 chr3R 12524121 12524157 chr3R 12524214 12524250 8 87 3.5 3.0 3.2 1.9 129 chr3R 12524121 intron Octbeta3R - chr3R 12524186 intron Octbeta3R - chr3R 12524250 intron Octbeta3R - chr3R_8_12520001 chr3R_12520001 RAL-409_95b 984 chr3R 12568488 12568526 chr3R 12568574 12568611 7 93 1.0 3.5 2.2 2.2 123 chr3R 12568488 intron Octbeta2R - chr3R 12568550 intron Octbeta2R - chr3R 12568611 intron Octbeta2R - chr3R_7_12565001 chr3R_12565001 RAL-409_95b 985 chr3R 12578655 12578693 chr3R 12578775 12578788 10 112 2.0 3.5 2.8 2.6 133 chr3R 12578655 intron Octbeta2R - chr3R 12578722 intron Octbeta2R - chr3R 12578788 intron Octbeta2R - chr3R_10_12575001 chr3R_12575001 RAL-409_95b 986 chr3R 12717392 12717421 chr3R 12717742 12717782 8 358 1.0 3.5 2.2 2.5 390 chr3R 12717392 intron Men - chr3R 12717587 intron Men - chr3R 12717782 intron Men - chr3R_8_12715001 chr3R_12715001 RAL-409_95b 987 chr3R 12782327 12782350 chr3R 12782670 12782689 4 344 1.5 0.5 1.0 2.0 362 chr3R 12782327 intron beat-Vc - chr3R 12782508 intron beat-Vc - chr3R 12782689 intron beat-Vc - chr3R_4_12780001 chr3R_12780001 RAL-409_95b 988 chr3R 12819010 12819046 chr3R 12819113 12819144 7 92 1.5 3.0 2.2 2.2 134 chr3R 12819010 intergenic not near genes chr3R 12819077 intergenic not near genes chr3R 12819144 intergenic not near genes chr3R_7_12815001 chr3R_12815001 RAL-409_95b 989 chr3R 12866469 12866515 chr3R 12866638 12866681 9 159 2.0 1.5 1.8 3.2 212 chr3R 12866469 intergenic not near genes chr3R 12866575 intergenic not near genes chr3R 12866681 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-409_95b 990 chr3R 12920153 12920185 chr3R 12925357 12925374 copia 10 5211 1.0 4.5 2.8 2.6 5221 chr3R 12920153 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925374 intron beat-Vb + chr3R_10_12920001 chr3R_12920001 RAL-409_95b 991 chr3R 13075364 13075389 chr3R 13075445 13075472 5 80 1.0 0.5 0.8 2.8 108 chr3R 13075364 intron sim + chr3R 13075418 intron sim + chr3R 13075472 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-409_95b 992 chr3R 13168021 13168051 chr3R 13168128 13168144 5 100 9.0 5.5 7.2 0.6 123 chr3R 13168021 intergenic not near genes chr3R 13168082 intergenic not near genes chr3R 13168144 intergenic not near genes chr3R_5_13165001 chr3R_13165001 RAL-409_95b 993 chr3R 13349009 13349032 chr3R 13349085 13349102 6 83 1.5 5.0 3.2 1.4 93 chr3R 13349009 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349102 intergenic not near genes chr3R_6_13345001 chr3R_13345001 RAL-409_95b 994 chr3R 13418672 13418681 chr3R 13418743 13418752 4 76 3.5 1.0 2.2 1.2 80 chr3R 13418672 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418752 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-409_95b 995 chr3R 13603054 13603329 chr3R 13603149 13603438 5 100 2.5 3.5 3.0 1.2 384 chr3R 13603054 intergenic not near genes chr3R 13603246 intergenic not near genes chr3R 13603438 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-409_95b 996 chr3R 13606703 13606735 chr3R 13606853 13606897 4 157 1.5 1.5 1.5 1.6 194 chr3R 13606703 intergenic CG9759 - chr3R 13606800 intergenic CG9759 - chr3R 13606897 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-409_95b 997 chr3R 13693028 13693028 chr3R 21907535 21907536 4 8214507 5.0 14.0 9.5 0.4 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-409_95b 998 chr3R 13782052 13782089 chr3R 13782134 13782167 4 80 2.0 3.5 2.8 1.1 115 chr3R 13782052 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-409_95b 999 chr3R 13850329 13850335 chr3R 13850419 13850443 6 96 0.0 3.5 1.8 2.1 114 chr3R 13850329 intergenic not near genes chr3R 13850386 intergenic not near genes chr3R 13850443 intergenic not near genes chr3R_6_13850001 chr3R_13850001 RAL-409_95b 1000 chr3R 13880563 13880579 chr3R 13880666 13880674 5 110 2.0 4.0 3.0 1.2 111 chr3R 13880563 intergenic not near genes chr3R 13880618 intergenic not near genes chr3R 13880674 intergenic not near genes chr3R_5_13880001 chr3R_13880001 RAL-409_95b 1001 chr3R 13896803 13896824 chr3R 13896954 13896976 6 157 3.5 2.0 2.8 1.6 173 chr3R 13896803 intergenic not near genes chr3R 13896890 intergenic not near genes chr3R 13896976 intergenic not near genes chr3R_6_13895001 chr3R_13895001 RAL-409_95b 1002 chr3R 13975380 13975395 chr3R 13975454 13975472 6 81 3.5 2.0 2.8 1.6 92 chr3R 13975380 intron rdx - chr3R 13975426 intron rdx - chr3R 13975472 intron rdx - chr3R_6_13975001 chr3R_13975001 RAL-409_95b 1003 chr3R 14083403 14083429 chr3R 14083522 14083535 8 112 2.5 0.5 1.5 3.2 132 chr3R 14083403 intron foxo + chr3R 14083469 intron foxo + chr3R 14083535 intron foxo + chr3R_8_14080001 chr3R_14080001 RAL-409_95b 1004 chr3R 14117445 14117467 chr3R 14117519 14117541 6 80 3.0 4.5 3.8 1.2 96 chr3R 14117445 intron Kif19A - chr3R 14117493 intron Kif19A - chr3R 14117541 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-409_95b 1005 chr3R 14194427 14194459 chr3R 14203575 14203625 roo 7 9157 1.0 1.5 1.2 3.2 9198 chr3R 14194427 intron Dop1R1 - chr3R 14199026 intron Dop1R1 - chr3R 14203625 intron Dop1R1 - chr3R_7_14195001 chr3R_14195001 RAL-409_95b 1006 chr3R 14255165 14255178 chr3R 14256399 14256416 5 1230 16.5 20.5 18.5 0.3 1251 chr3R 14255165 intron Aats-met - chr3R 14255790 intron Aats-met - chr3R 14256416 intron,exon Aats-met -,CG43179 + chr3R_5_14255001 chr3R_14255001 RAL-409_95b 1007 chr3R 14386225 14386236 chr3R 14386308 14386319 5 85 0.0 3.0 1.5 2.0 94 chr3R 14386225 intergenic not near genes chr3R 14386272 intergenic not near genes chr3R 14386319 intergenic not near genes chr3R_5_14385001 chr3R_14385001 RAL-409_95b 1008 chr3R 14527397 14527409 chr3R 14527479 14527505 4 91 3.5 2.5 3.0 1.0 108 chr3R 14527397 intron Pde6 - chr3R 14527451 intron Pde6 - chr3R 14527505 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-409_95b 1009 chr3R 14543600 14543629 chr3R 14543679 14543729 7 89 2.0 1.0 1.5 2.8 129 chr3R 14543600 intron Pde6 - chr3R 14543664 intron Pde6 - chr3R 14543729 intron Pde6 - chr3R_7_14540001 chr3R_14540001 RAL-409_95b 1010 chr3R 14546030 14546066 chr3R 14546118 14546163 4 84 2.0 1.0 1.5 1.6 133 chr3R 14546030 intron Pde6 - chr3R 14546096 intron Pde6 - chr3R 14546163 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-409_95b 1011 chr3R 14608804 14608833 chr3R 14608876 14608912 13 82 2.5 1.5 2.0 4.3 108 chr3R 14608804 intergenic not near genes chr3R 14608858 intergenic not near genes chr3R 14608912 intergenic not near genes chr3R_13_14605001 chr3R_14605001 RAL-409_95b 1012 chr3R 14704387 14704403 chr3R 14704464 14704476 7 81 2.5 2.0 2.2 2.2 89 chr3R 14704387 intron kibra - chr3R 14704432 intron kibra - chr3R 14704476 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-409_95b 1013 chr3R 14869847 14869892 chr3R 14869958 14869967 8 98 2.5 4.0 3.2 1.9 120 chr3R 14869847 intron btsz - chr3R 14869907 intron btsz - chr3R 14869967 intron btsz - chr3R_8_14865001 chr3R_14865001 RAL-409_95b 1014 chr3R 14898456 14898505 chr3R 14898596 14898644 7 129 0.5 1.0 0.8 3.9 188 chr3R 14898456 intergenic Nup93-2 -,CG3817 + chr3R 14898550 intergenic Nup93-2 -,CG3817 + chr3R 14898644 intergenic CG3817 +,Nup93-2 - chr3R_7_14895001 chr3R_14895001 RAL-409_95b 1015 chr3R 14943161 14943195 chr3R 14944230 14944271 10 1065 2.0 3.0 2.5 2.9 1110 chr3R 14943161 intergenic not near genes chr3R 14943716 intergenic not near genes chr3R 14944271 intergenic not near genes chr3R_10_14940001 chr3R_14940001 RAL-409_95b 1016 chr3R 14992803 14992836 chr3R 14992967 14993012 5 166 2.5 0.5 1.5 2.0 209 chr3R 14992803 intergenic not near genes chr3R 14992908 intergenic not near genes chr3R 14993012 intergenic not near genes chr3R_5_14990001 chr3R_14990001 RAL-409_95b 1017 chr3R 15026324 15026338 chr3R 15026421 15026442 4 103 2.5 1.0 1.8 1.4 118 chr3R 15026324 intergenic not near genes chr3R 15026383 intergenic not near genes chr3R 15026442 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-409_95b 1018 chr3R 15102457 15102478 chr3R 15109789 15109812 412 5 7330 4.0 3.0 3.5 1.1 7355 chr3R 15102457 intron CG42788 - chr3R 15106134 intron CG42788 - chr3R 15109812 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-409_95b 1019 chr3R 15127780 15127810 chr3R 15127862 15127904 6 92 2.0 1.5 1.8 2.1 124 chr3R 15127780 intron CG42788 - chr3R 15127842 intron CG42788 - chr3R 15127904 intron CG42788 - chr3R_6_15125001 chr3R_15125001 RAL-409_95b 1020 chr3R 15132059 15132082 chr3R 15135121 15135127 Juan 6 3059 5.0 5.5 5.2 1.0 3068 chr3R 15132059 intergenic CG42788 - chr3R 15133593 intergenic not near genes chr3R 15135127 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-409_95b 1021 chr3R 15162548 15162552 chr3R 15167315 15167322 F-element 4 4778 1.5 2.0 1.8 1.4 4774 chr3R 15162548 intron Gyc88E + chr3R 15164935 intron Gyc88E + chr3R 15167322 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-409_95b 1022 chr3R 15286983 15286988 chr3R 21907534 21907535 6 6620549 8.5 14.0 11.2 0.5 6620552 chr3R 15286983 intron Tm1 + chr3R 18597259 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-409_95b 1023 chr3R 15416260 15416280 chr3R 15416333 15416362 5 78 3.0 4.5 3.8 1.0 102 chr3R 15416260 3` UTR Atx2 + chr3R 15416311 3` UTR Atx2 + chr3R 15416362 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-409_95b 1024 chr3R 15571241 15571498 chr3R 15571349 15571597 18 103 3.5 4.0 3.8 3.8 356 chr3R 15571241 intergenic not near genes chr3R 15571419 intergenic not near genes chr3R 15571597 intergenic not near genes chr3R_18_15570001 chr3R_15570001 RAL-409_95b 1025 chr3R 15601157 15601196 chr3R 15608690 15608709 412 15 7527 5.5 5.5 5.5 2.3 7552 chr3R 15601157 intergenic not near genes chr3R 15604933 intergenic not near genes chr3R 15608709 intergenic not near genes chr3R_15_15600001 chr3R_15600001 RAL-409_95b 1026 chr3R 15639325 15639367 chr3R 15639624 15639671 6 300 0.5 3.0 1.8 2.1 346 chr3R 15639325 intergenic not near genes chr3R 15639498 intergenic not near genes chr3R 15639671 intergenic not near genes chr3R_6_15635001 chr3R_15635001 RAL-409_95b 1027 chr3R 15691187 15691325 chr3R 15691286 15691408 8 96 0.0 0.0 0.0 8.0 221 chr3R 15691187 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691408 intergenic not near genes chr3R_8_15690001 chr3R_15690001 RAL-409_95b 1028 chr3R 15786240 15786251 chr3R 15786549 15786556 4 306 1.5 0.0 0.8 2.2 316 chr3R 15786240 intergenic CG9590 + chr3R 15786398 intergenic CG9590 + chr3R 15786556 intergenic CG9590 + chr3R_4_15785001 chr3R_15785001 RAL-409_95b 1029 chr3R 15878071 15878102 chr3R 15878179 15878205 8 102 3.0 2.0 2.5 2.3 134 chr3R 15878071 intergenic not near genes chr3R 15878138 intergenic not near genes chr3R 15878205 intergenic not near genes chr3R_8_15875001 chr3R_15875001 RAL-409_95b 1030 chr3R 16048862 16048881 chr3R 16048942 16048991 6 97 2.5 1.5 2.0 2.0 129 chr3R 16048862 intron ird5 - chr3R 16048926 intron ird5 - chr3R 16048991 intron ird5 - chr3R_6_16045001 chr3R_16045001 RAL-409_95b 1031 chr3R 16225084 16225111 chr3R 16225173 16225213 6 92 3.5 4.5 4.0 1.2 129 chr3R 16225084 intergenic not near genes chr3R 16225148 intergenic not near genes chr3R 16225213 intergenic tara + chr3R_6_16225001 chr3R_16225001 RAL-409_95b 1032 chr3R 16374283 16374320 chr3R 16374415 16374428 4 125 3.5 2.5 3.0 1.0 145 chr3R 16374283 intergenic ss - chr3R 16374356 intergenic ss - chr3R 16374428 intergenic ss - chr3R_4_16370001 chr3R_16370001 RAL-409_95b 1033 chr3R 16464519 16464537 chr3R 16464703 16464724 4 190 2.5 5.5 4.0 0.8 205 chr3R 16464519 exon CG42232 - chr3R 16464622 exon CG42232 - chr3R 16464724 exon CG42232 - chr3R_4_16460001 chr3R_16460001 RAL-409_95b 1034 chr3R 16472584 16472597 chr3R 16472648 16472656 6 71 4.5 3.5 4.0 1.2 72 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472656 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-409_95b 1035 chr3R 16508159 16508191 chr3R 16508245 16508277 5 87 3.0 2.5 2.8 1.3 118 chr3R 16508159 intron CG42342 + chr3R 16508218 intron CG42342 + chr3R 16508277 intron CG42342 + chr3R_5_16505001 chr3R_16505001 RAL-409_95b 1036 chr3R 16617215 16617232 chr3R 16617286 16617319 7 78 1.0 1.5 1.2 3.2 104 chr3R 16617215 intergenic CG17562 + chr3R 16617267 intergenic CG17562 + chr3R 16617319 intergenic CG17562 + chr3R_7_16615001 chr3R_16615001 RAL-409_95b 1037 chr3R 16756304 16756339 chr3R 16762515 16762523 diver 5 6200 1.5 0.5 1.0 2.5 6219 chr3R 16756304 intron bxd - chr3R 16759414 intron bxd - chr3R 16762523 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-409_95b 1038 chr3R 17294657 17294698 chr3R 17295105 17295140 BS 4 444 1.0 6.0 3.5 0.9 483 chr3R 17294657 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295140 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-409_95b 1039 chr3R 17312796 17312848 chr3R 17312901 17312951 10 90 1.5 1.5 1.5 4.0 155 chr3R 17312796 intergenic not near genes chr3R 17312874 intergenic not near genes chr3R 17312951 intergenic not near genes chr3R_10_17310001 chr3R_17310001 RAL-409_95b 1040 chr3R 17335164 17335179 chr3R 17335238 17335261 5 79 2.5 1.0 1.8 1.8 97 chr3R 17335164 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335261 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-409_95b 1041 chr3R 17355472 17355496 chr3R 17355567 17355567 5 83 9.5 1.0 5.2 0.8 95 chr3R 17355472 intron beat-IIa - chr3R 17355520 intron beat-IIa - chr3R 17355567 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-409_95b 1042 chr3R 17461186 17461230 chr3R 17461288 17461332 7 96 1.5 0.5 1.0 3.5 146 chr3R 17461186 intergenic not near genes chr3R 17461259 intergenic not near genes chr3R 17461332 intergenic not near genes chr3R_7_17460001 chr3R_17460001 RAL-409_95b 1043 chr3R 17497965 17497980 chr3R 17498055 17498068 5 91 2.5 0.5 1.5 2.0 103 chr3R 17497965 intron Dscam3 - chr3R 17498016 intron Dscam3 - chr3R 17498068 intron Dscam3 - chr3R_5_17495001 chr3R_17495001 RAL-409_95b 1044 chr3R 17521577 17521584 chr3R 17521716 17521763 4 158 1.0 3.0 2.0 1.3 186 chr3R 17521577 intergenic not near genes chr3R 17521670 intergenic not near genes chr3R 17521763 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-409_95b 1045 chr3R 17587211 17587240 chr3R 17587392 17587436 8 183 1.5 3.0 2.2 2.5 225 chr3R 17587211 intergenic not near genes chr3R 17587324 intergenic not near genes chr3R 17587436 intergenic not near genes chr3R_8_17585001 chr3R_17585001 RAL-409_95b 1046 chr3R 17886866 17886915 chr3R 17886964 17886997 6 85 1.5 1.5 1.5 2.4 131 chr3R 17886866 intron Rim - chr3R 17886932 intron Rim - chr3R 17886997 intron Rim - chr3R_6_17885001 chr3R_17885001 RAL-409_95b 1047 chr3R 18041752 18041775 chr3R 18041830 18041854 8 78 0.5 0.5 0.5 5.3 102 chr3R 18041752 intergenic not near genes chr3R 18041803 intergenic not near genes chr3R 18041854 intergenic not near genes chr3R_8_18040001 chr3R_18040001 RAL-409_95b 1048 chr3R 18061594 18061603 chr3R 18063155 18063191 F-element 4 1573 1.5 2.0 1.8 1.4 1597 chr3R 18061594 intergenic not near genes chr3R 18062392 intergenic not near genes chr3R 18063191 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-409_95b 1049 chr3R 18501588 18501620 chr3R 18501689 18501700 7 95 2.5 5.0 3.8 1.5 112 chr3R 18501588 intron fru - chr3R 18501644 intron fru - chr3R 18501700 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-409_95b 1050 chr3R 18606506 18606529 chr3R 18610739 18610774 F-element 4 4240 1.0 2.5 1.8 1.4 4268 chr3R 18606506 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610774 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-409_95b 1051 chr3R 18639649 18639664 chr3R 18639726 18639741 5 88 0.5 0.5 0.5 3.3 92 chr3R 18639649 intron,intron qin +,CG14301 - chr3R 18639695 intron,intron qin +,CG14301 - chr3R 18639741 intron,intron qin +,CG14301 - chr3R_5_18635001 chr3R_18635001 RAL-409_95b 1052 chr3R 18766780 18766808 chr3R 18766854 18766880 9 83 4.0 3.5 3.8 1.9 100 chr3R 18766780 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766880 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-409_95b 1053 chr3R 18812086 18812109 chr3R 18812166 18812194 6 88 3.0 6.0 4.5 1.1 108 chr3R 18812086 intron CG18208 - chr3R 18812140 intron CG18208 - chr3R 18812194 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-409_95b 1054 chr3R 18817508 18817531 chr3R 18817609 18817623 4 98 1.0 0.0 0.5 2.7 115 chr3R 18817508 intron CG18208 - chr3R 18817566 intron CG18208 - chr3R 18817623 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-409_95b 1055 chr3R 18839808 18839838 chr3R 18839902 18839921 10 89 2.0 3.0 2.5 2.9 113 chr3R 18839808 intron CG18208 - chr3R 18839864 intron CG18208 - chr3R 18839921 intron CG18208 - chr3R_10_18835001 chr3R_18835001 RAL-409_95b 1056 chr3R 18967129 18967173 chr3R 18967322 18967348 5 184 20.0 15.0 17.5 0.3 219 chr3R 18967129 intron,intron CG42613 +,CG43732 + chr3R 18967238 intron,intron CG42613 +,CG43732 + chr3R 18967348 intron,intron CG42613 +,CG43732 + chr3R_5_18965001 chr3R_18965001 RAL-409_95b 1057 chr3R 19013018 19013050 chr3R 19013102 19013154 7 90 2.5 0.0 1.2 3.2 136 chr3R 19013018 intron gukh + chr3R 19013086 intron gukh + chr3R 19013154 intron gukh + chr3R_7_19010001 chr3R_19010001 RAL-409_95b 1058 chr3R 19229379 19229399 chr3R 19229457 19229480 6 80 3.5 2.0 2.8 1.6 101 chr3R 19229379 intergenic CG3773 +,CG5250 - chr3R 19229430 intergenic CG3773 +,CG5250 - chr3R 19229480 5` UTR CG3773 + chr3R_6_19225001 chr3R_19225001 RAL-409_95b 1059 chr3R 19340402 19340425 chr3R 19340478 19340522 8 79 1.0 1.0 1.0 4.0 120 chr3R 19340402 intergenic not near genes chr3R 19340462 intergenic not near genes chr3R 19340522 intergenic not near genes chr3R_8_19340001 chr3R_19340001 RAL-409_95b 1060 chr3R 19602756 19602786 chr3R 19602840 19602861 4 88 3.0 0.5 1.8 1.4 105 chr3R 19602756 intergenic CG7333 + chr3R 19602808 intergenic CG7333 + chr3R 19602861 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-409_95b 1061 chr3R 19702332 19702350 chr3R 19702403 19702452 5 82 2.5 4.0 3.2 1.2 120 chr3R 19702332 intergenic not near genes chr3R 19702392 intergenic not near genes chr3R 19702452 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-409_95b 1062 chr3R 19750055 19750064 chr3R 19750124 19750151 4 81 2.0 2.0 2.0 1.3 96 chr3R 19750055 intron GluClalpha + chr3R 19750103 intron GluClalpha + chr3R 19750151 intron GluClalpha + chr3R_4_19750001 chr3R_19750001 RAL-409_95b 1063 chr3R 19762818 19762840 chr3R 19762935 19762962 6 120 4.0 3.5 3.8 1.2 144 chr3R 19762818 intron GluClalpha + chr3R 19762890 intron GluClalpha + chr3R 19762962 intron GluClalpha + chr3R_6_19760001 chr3R_19760001 RAL-409_95b 1064 chr3R 19783189 19783210 chr3R 19783279 19783299 4 95 1.5 2.0 1.8 1.4 110 chr3R 19783189 intergenic CG11407 +,CG11453 + chr3R 19783244 intergenic CG11407 +,CG11453 + chr3R 19783299 intergenic CG11407 +,CG11453 + chr3R_4_19780001 chr3R_19780001 RAL-409_95b 1065 chr3R 19793909 19793924 chr3R 19793990 19794022 7 98 2.5 1.0 1.8 2.5 113 chr3R 19793909 intergenic bnl - chr3R 19793966 intergenic bnl - chr3R 19794022 intergenic bnl - chr3R_7_19790001 chr3R_19790001 RAL-409_95b 1066 chr3R 19943880 19943900 chr3R 19943966 19943978 4 80 2.0 0.0 1.0 2.0 98 chr3R 19943880 intron Hs6st - chr3R 19943929 intron Hs6st - chr3R 19943978 intron Hs6st - chr3R_4_19940001 chr3R_19940001 RAL-409_95b 1067 chr3R 20008810 20008853 chr3R 20008911 20008935 6 88 1.0 3.5 2.2 1.9 125 chr3R 20008810 intergenic MED25 +,Hs6st - chr3R 20008872 intergenic MED25 +,Hs6st - chr3R 20008935 intergenic MED25 +,Hs6st - chr3R_6_20005001 chr3R_20005001 RAL-409_95b 1068 chr3R 20059471 20059491 chr3R 20059545 20059589 5 85 2.0 1.0 1.5 2.0 118 chr3R 20059471 intron CG4390 - chr3R 20059530 intron CG4390 - chr3R 20059589 exon CG4390 - chr3R_5_20055001 chr3R_20055001 RAL-409_95b 1069 chr3R 20084397 20084447 chr3R 20084658 20084685 13 253 0.5 3.0 1.8 4.6 288 chr3R 20084397 intergenic not near genes chr3R 20084541 intergenic not near genes chr3R 20084685 intergenic not near genes chr3R_13_20080001 chr3R_20080001 RAL-409_95b 1070 chr3R 20109543 20109560 chr3R 20114743 20114786 copia 5 5210 2.0 2.0 2.0 1.7 5243 chr3R 20109543 intergenic not near genes chr3R 20112164 intergenic not near genes chr3R 20114786 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-409_95b 1071 chr3R 20124563 20124591 chr3R 20124655 20124682 7 89 3.0 4.5 3.8 1.5 119 chr3R 20124563 intergenic not near genes chr3R 20124622 intergenic not near genes chr3R 20124682 intergenic not near genes chr3R_7_20120001 chr3R_20120001 RAL-409_95b 1072 chr3R 20137215 20137217 chr3R 20137341 20137363 4 134 3.0 3.0 3.0 1.0 148 chr3R 20137215 intergenic not near genes chr3R 20137289 intergenic not near genes chr3R 20137363 intergenic not near genes chr3R_4_20135001 chr3R_20135001 RAL-409_95b 1073 chr3R 20149605 20149616 chr3R 20151725 20151737 4 2116 6.0 15.5 10.8 0.3 2132 chr3R 20149605 intergenic not near genes chr3R 20150671 intergenic not near genes chr3R 20151737 intergenic not near genes chr3R_4_20150001 chr3R_20150001 RAL-409_95b 1074 chr3R 20156678 20156718 chr3R 20165868 20165908 roo 5 9182 2.5 2.5 2.5 1.4 9230 chr3R 20156678 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165908 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-409_95b 1075 chr3R 20201352 20201383 chr3R 20201440 20201466 5 87 2.5 2.5 2.5 1.4 114 chr3R 20201352 intergenic not near genes chr3R 20201409 intergenic not near genes chr3R 20201466 intergenic not near genes chr3R_5_20200001 chr3R_20200001 RAL-409_95b 1076 chr3R 20266538 20266544 chr3R 20272985 20273034 Burdock 4 6476 2.5 1.0 1.8 1.4 6496 chr3R 20266538 intron cic + chr3R 20269786 intron cic + chr3R 20273034 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-409_95b 1077 chr3R 20274421 20274465 chr3R 20274580 20274600 9 147 0.5 1.5 1.0 4.5 179 chr3R 20274421 intron cic + chr3R 20274510 intron cic + chr3R 20274600 intron cic + chr3R_9_20270001 chr3R_20270001 RAL-409_95b 1078 chr3R 20282282 20282307 chr3R 20282356 20282365 4 76 0.0 1.0 0.5 2.7 83 chr3R 20282282 intron cic + chr3R 20282324 intron cic + chr3R 20282365 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-409_95b 1079 chr3R 20364441 20364477 chr3R 20364741 20364770 6 292 2.0 5.5 3.8 1.2 329 chr3R 20364441 intergenic not near genes chr3R 20364606 intergenic not near genes chr3R 20364770 intergenic not near genes chr3R_6_20360001 chr3R_20360001 RAL-409_95b 1080 chr3R 20499852 20499891 chr3R 20499962 20499978 8 101 3.5 2.0 2.8 2.1 126 chr3R 20499852 intergenic Dic2 - chr3R 20499915 intergenic Dic2 - chr3R 20499978 intergenic Dic2 - chr3R_8_20495001 chr3R_20495001 RAL-409_95b 1081 chr3R 20516545 20516569 chr3R 20516903 20516945 6 360 2.0 3.0 2.5 1.7 400 chr3R 20516545 intergenic not near genes chr3R 20516745 intergenic not near genes chr3R 20516945 intergenic not near genes chr3R_6_20515001 chr3R_20515001 RAL-409_95b 1082 chr3R 20703495 20703512 chr3R 20703886 20703905 4 392 2.0 3.0 2.5 1.1 410 chr3R 20703495 intron Oamb - chr3R 20703700 intron Oamb - chr3R 20703905 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-409_95b 1083 chr3R 20707748 20707769 chr3R 20707961 20707980 10 218 2.0 1.0 1.5 4.0 232 chr3R 20707748 intron Oamb - chr3R 20707864 intron Oamb - chr3R 20707980 intron Oamb - chr3R_10_20705001 chr3R_20705001 RAL-409_95b 1084 chr3R 20730910 20731059 chr3R 20731029 20731145 8 105 0.0 0.0 0.0 8.0 235 chr3R 20730910 intergenic not near genes chr3R 20731028 intergenic not near genes chr3R 20731145 intergenic CG31205 + chr3R_8_20730001 chr3R_20730001 RAL-409_95b 1085 chr3R 20854506 20854512 chr3R 20859271 20859294 Doc 4 4786 6.5 3.0 4.8 0.7 4788 chr3R 20854506 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859294 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-409_95b 1086 chr3R 20874537 20874548 chr3R 20874630 20874632 4 88 1.0 2.0 1.5 1.6 95 chr3R 20874537 intergenic TotB + chr3R 20874584 intergenic TotB + chr3R 20874632 intergenic TotB + chr3R_4_20870001 chr3R_20870001 RAL-409_95b 1087 chr3R 20901350 20901376 chr3R 20901436 20901456 7 83 1.0 2.5 1.8 2.5 106 chr3R 20901350 intergenic not near genes chr3R 20901403 intergenic not near genes chr3R 20901456 intergenic CG5621 + chr3R_7_20900001 chr3R_20900001 RAL-409_95b 1088 chr3R 21014000 21014031 chr3R 21014098 21014122 5 87 5.5 3.0 4.2 1.0 122 chr3R 21014000 3` UTR Calx + chr3R 21014061 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-409_95b 1089 chr3R 21186010 21186059 chr3R 21186130 21186156 11 107 1.0 1.5 1.2 5.0 146 chr3R 21186010 intron SNF4Agamma + chr3R 21186083 intron SNF4Agamma + chr3R 21186156 intron SNF4Agamma + chr3R_11_21185001 chr3R_21185001 RAL-409_95b 1090 chr3R 21235195 21235231 chr3R 21235746 21235790 16 550 3.5 4.0 3.8 3.3 595 chr3R 21235195 intron e - chr3R 21235492 intron e - chr3R 21235790 intron e - chr3R_16_21235001 chr3R_21235001 RAL-409_95b 1091 chr3R 21239787 21239955 chr3R 21239901 21240049 8 86 0.5 0.0 0.2 6.7 262 chr3R 21239787 intergenic not near genes chr3R 21239918 intergenic not near genes chr3R 21240049 intergenic not near genes chr3R_8_21235001 chr3R_21235001 RAL-409_95b 1092 chr3R 21330802 21330830 chr3R 21330889 21330924 12 100 3.5 3.0 3.2 2.9 122 chr3R 21330802 intron CG16791 - chr3R 21330863 intron CG16791 - chr3R 21330924 intron CG16791 - chr3R_12_21330001 chr3R_21330001 RAL-409_95b 1093 chr3R 21383267 21383299 chr3R 21383359 21383375 5 84 1.0 2.5 1.8 1.8 108 chr3R 21383267 intergenic not near genes chr3R 21383321 intergenic not near genes chr3R 21383375 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-409_95b 1094 chr3R 21472002 21472035 chr3R 21472103 21472114 5 94 3.5 2.0 2.8 1.3 112 chr3R 21472002 intergenic not near genes chr3R 21472058 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-409_95b 1095 chr3R 21494680 21494707 chr3R 21494760 21494783 6 86 4.5 3.0 3.8 1.2 103 chr3R 21494680 intergenic not near genes chr3R 21494732 intergenic not near genes chr3R 21494783 intergenic not near genes chr3R_6_21490001 chr3R_21490001 RAL-409_95b 1096 chr3R 21519983 21520110 chr3R 21520093 21520220 4 111 0.5 0.5 0.5 2.7 237 chr3R 21519983 intergenic not near genes chr3R 21520102 intergenic not near genes chr3R 21520220 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-409_95b 1097 chr3R 21613452 21613475 chr3R 21613539 21613553 10 90 1.5 7.5 4.5 1.8 101 chr3R 21613452 intron InR - chr3R 21613502 intron InR - chr3R 21613553 intron InR - chr3R_10_21610001 chr3R_21610001 RAL-409_95b 1098 chr3R 21641254 21641287 chr3R 21641330 21641361 7 72 4.0 0.0 2.0 2.3 107 chr3R 21641254 intron E2f - chr3R 21641308 intron E2f - chr3R 21641361 intron E2f - chr3R_7_21640001 chr3R_21640001 RAL-409_95b 1099 chr3R 21761127 21761145 chr3R 21768518 21768532 mdg1 4 7388 5.0 6.0 5.5 0.6 7405 chr3R 21761127 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768532 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-409_95b 1100 chr3R 21790967 21790980 chr3R 21791056 21791064 4 92 6.5 4.0 5.2 0.6 97 chr3R 21790967 intron CASK - chr3R 21791016 intron CASK - chr3R 21791064 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-409_95b 1101 chr3R 21794472 21794482 chr3R 21794550 21794580 4 93 1.5 1.5 1.5 1.6 108 chr3R 21794472 intron CASK - chr3R 21794526 intron CASK - chr3R 21794580 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-409_95b 1102 chr3R 21907534 21907534 chr3R 28831801 28831804 26 6924268 17.0 7.5 12.2 2.0 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-409_95b 1103 chr3R 21907535 21907535 chr3R 28831801 28831802 40 6924267 17.5 7.5 12.5 3.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_40_25365001 chr3R_25365001 RAL-409_95b 1104 chr3R 21907536 21907536 chr3R 28831801 28831802 29 6924266 17.5 7.5 12.5 2.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-409_95b 1105 chr3R 21924006 21924049 chr3R 21924100 21924158 6 93 2.5 1.5 2.0 2.0 152 chr3R 21924006 intergenic not near genes chr3R 21924082 intergenic not near genes chr3R 21924158 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-409_95b 1106 chr3R 21937209 21937233 chr3R 21937306 21937330 5 95 1.0 1.0 1.0 2.5 121 chr3R 21937209 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937330 intergenic not near genes chr3R_5_21935001 chr3R_21935001 RAL-409_95b 1107 chr3R 21958599 21958625 chr3R 21958698 21958722 4 98 5.0 1.0 3.0 1.0 123 chr3R 21958599 intron Eip93F + chr3R 21958660 intron Eip93F + chr3R 21958722 intron Eip93F + chr3R_4_21955001 chr3R_21955001 RAL-409_95b 1108 chr3R 22116414 22116432 chr3R 22116779 22116780 8 367 2.0 5.0 3.5 1.8 366 chr3R 22116414 exon Ir94b - chr3R 22116597 exon Ir94b - chr3R 22116780 exon Ir94b - chr3R_8_22115001 chr3R_22115001 RAL-409_95b 1109 chr3R 22117408 22117441 chr3R 22117490 22117519 8 77 6.0 2.5 4.2 1.5 111 chr3R 22117408 intergenic Ir94b -,Ir94c - chr3R 22117464 intergenic Ir94c -,Ir94b - chr3R 22117519 intergenic Ir94c -,Ir94b - chr3R_8_22115001 chr3R_22115001 RAL-409_95b 1110 chr3R 22234672 22234712 chr3R 22236008 22236034 pogo 7 1326 2.5 2.0 2.2 2.2 1362 chr3R 22234672 intron SKIP + chr3R 22235353 intron SKIP + chr3R 22236034 intron SKIP + chr3R_7_22235001 chr3R_22235001 RAL-409_95b 1111 chr3R 22239491 22239521 chr3R 22248549 22248583 roo 6 9063 2.0 1.0 1.5 2.4 9092 chr3R 22239491 intron SKIP + chr3R 22244037 intron SKIP + chr3R 22248583 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-409_95b 1112 chr3R 22292473 22292504 chr3R 22292564 22292600 6 90 2.5 3.5 3.0 1.5 127 chr3R 22292473 intron SKIP + chr3R 22292536 intron SKIP + chr3R 22292600 intron SKIP + chr3R_6_22290001 chr3R_22290001 RAL-409_95b 1113 chr3R 22428578 22428607 chr3R 22428661 22428680 6 82 0.0 2.5 1.2 2.7 102 chr3R 22428578 intron CG13847 - chr3R 22428629 intron CG13847 - chr3R 22428680 intron CG13847 - chr3R_6_22425001 chr3R_22425001 RAL-409_95b 1114 chr3R 22450541 22450576 chr3R 22453180 22453220 NOF 10 2647 4.0 4.0 4.0 2.0 2679 chr3R 22450541 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453220 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-409_95b 1115 chr3R 22492366 22492402 chr3R 22492464 22492498 4 94 2.0 0.5 1.2 1.8 132 chr3R 22492366 3` UTR CG7045 + chr3R 22492432 intergenic CG7045 + chr3R 22492498 intergenic CG7045 +,CG7046 + chr3R_4_22490001 chr3R_22490001 RAL-409_95b 1116 chr3R 22538450 22538467 chr3R 22538530 22538556 4 95 3.0 2.5 2.8 1.1 106 chr3R 22538450 intron CG5326 - chr3R 22538503 intron CG5326 - chr3R 22538556 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-409_95b 1117 chr3R 22769105 22769126 chr3R 22769165 22769191 6 82 3.0 2.5 2.8 1.6 86 chr3R 22769105 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769148 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769191 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_6_22765001 chr3R_22765001 RAL-409_95b 1118 chr3R 22797776 22797938 chr3R 22797850 22798050 12 101 0.0 0.0 0.0 12.0 274 chr3R 22797776 intergenic not near genes chr3R 22797913 intergenic not near genes chr3R 22798050 intergenic not near genes chr3R_12_22795001 chr3R_22795001 RAL-409_95b 1119 chr3R 22860168 22860175 chr3R 22860258 22860264 7 100 2.0 1.5 1.8 2.5 96 chr3R 22860168 intergenic not near genes chr3R 22860216 intergenic not near genes chr3R 22860264 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-409_95b 1120 chr3R 22881191 22881204 chr3R 22884900 22884918 Doc 4 3714 2.5 0.5 1.5 1.6 3727 chr3R 22881191 intergenic not near genes chr3R 22883054 intergenic not near genes chr3R 22884918 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-409_95b 1121 chr3R 22919173 22919182 chr3R 22919257 22919289 5 99 3.0 3.0 3.0 1.2 116 chr3R 22919173 intron klg + chr3R 22919231 intron klg + chr3R 22919289 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-409_95b 1122 chr3R 22927873 22927905 chr3R 22927963 22928007 9 94 4.0 3.5 3.8 1.9 134 chr3R 22927873 intron klg + chr3R 22927940 intron klg + chr3R 22928007 intron klg + chr3R_9_22925001 chr3R_22925001 RAL-409_95b 1123 chr3R 22990339 22990381 chr3R 22990607 22990629 5 255 3.5 2.0 2.8 1.3 290 chr3R 22990339 intron,exon Nha2 -,Or94b + chr3R 22990484 intron,intron Nha2 -,Or94b + chr3R 22990629 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-409_95b 1124 chr3R 23016205 23016229 chr3R 23016290 23016307 5 85 2.0 3.0 2.5 1.4 102 chr3R 23016205 intergenic not near genes chr3R 23016256 intergenic not near genes chr3R 23016307 intergenic not near genes chr3R_5_23015001 chr3R_23015001 RAL-409_95b 1125 chr3R 23090414 23090437 chr3R 23090492 23090537 4 90 1.5 4.0 2.8 1.1 123 chr3R 23090414 intron CG13830 - chr3R 23090476 intron CG13830 - chr3R 23090537 intron CG13830 - chr3R_4_23090001 chr3R_23090001 RAL-409_95b 1126 chr3R 23182664 23182695 chr3R 23182767 23182798 7 102 0.5 2.5 1.5 2.8 134 chr3R 23182664 intron Irk1 + chr3R 23182731 intron Irk1 + chr3R 23182798 intron Irk1 + chr3R_7_23180001 chr3R_23180001 RAL-409_95b 1127 chr3R 23198108 23198127 chr3R 23198352 23198370 6 254 2.5 2.5 2.5 1.7 262 chr3R 23198108 intron cnc - chr3R 23198239 intron cnc - chr3R 23198370 intron cnc - chr3R_6_23195001 chr3R_23195001 RAL-409_95b 1128 chr3R 23245984 23246018 chr3R 23246078 23246099 4 84 1.0 2.0 1.5 1.6 115 chr3R 23245984 intron CG4467 - chr3R 23246042 intron CG4467 - chr3R 23246099 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-409_95b 1129 chr3R 23291250 23291280 chr3R 23291332 23291353 6 86 1.5 3.5 2.5 1.7 103 chr3R 23291250 3` UTR pnt - chr3R 23291302 3` UTR pnt - chr3R 23291353 3` UTR pnt - chr3R_6_23290001 chr3R_23290001 RAL-409_95b 1130 chr3R 23303611 23303656 chr3R 23303709 23303734 7 92 2.5 4.0 3.2 1.7 123 chr3R 23303611 intron pnt - chr3R 23303672 intron pnt - chr3R 23303734 intron pnt - chr3R_7_23300001 chr3R_23300001 RAL-409_95b 1131 chr3R 23311672 23311705 chr3R 23311771 23311799 4 101 4.5 1.5 3.0 1.0 127 chr3R 23311672 intron pnt - chr3R 23311736 intron pnt - chr3R 23311799 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-409_95b 1132 chr3R 23342638 23342668 chr3R 23342776 23342782 11 141 1.5 4.0 2.8 2.9 144 chr3R 23342638 intron pnt - chr3R 23342710 intron pnt - chr3R 23342782 intron pnt - chr3R_11_23340001 chr3R_23340001 RAL-409_95b 1133 chr3R 23386307 23386350 chr3R 23386437 23386465 10 122 1.0 4.5 2.8 2.6 158 chr3R 23386307 intergenic not near genes chr3R 23386386 intergenic not near genes chr3R 23386465 intergenic not near genes chr3R_10_23385001 chr3R_23385001 RAL-409_95b 1134 chr3R 23543468 23543514 chr3R 23543925 23543944 5 443 1.5 1.0 1.2 2.3 476 chr3R 23543468 intergenic not near genes chr3R 23543706 intergenic not near genes chr3R 23543944 intergenic not near genes chr3R_5_23540001 chr3R_23540001 RAL-409_95b 1135 chr3R 23572739 23572780 chr3R 23572879 23572898 9 122 1.0 1.0 1.0 4.5 159 chr3R 23572739 intron beat-IV + chr3R 23572818 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_9_23570001 chr3R_23570001 RAL-409_95b 1136 chr3R 23629815 23629850 chr3R 23629902 23629930 8 84 2.0 4.0 3.0 2.0 115 chr3R 23629815 intron CG31145 - chr3R 23629872 intron CG31145 - chr3R 23629930 intron CG31145 - chr3R_8_23625001 chr3R_23625001 RAL-409_95b 1137 chr3R 23684696 23684729 chr3R 23685182 23685213 roo 4 477 2.0 4.0 3.0 1.0 517 chr3R 23684696 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685213 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-409_95b 1138 chr3R 23714693 23714729 chr3R 23714807 23714821 8 110 3.5 2.5 3.0 2.0 128 chr3R 23714693 intron nau - chr3R 23714757 intron nau - chr3R 23714821 intron nau - chr3R_8_23710001 chr3R_23710001 RAL-409_95b 1139 chr3R 23739450 23739480 chr3R 23739551 23739587 4 97 1.0 4.0 2.5 1.1 137 chr3R 23739450 intron Hmgcr + chr3R 23739518 intron Hmgcr + chr3R 23739587 intron Hmgcr + chr3R_4_23735001 chr3R_23735001 RAL-409_95b 1140 chr3R 23820637 23820661 chr3R 23820722 23820742 7 83 0.5 2.0 1.2 3.2 105 chr3R 23820637 5` UTR CG34355 + chr3R 23820690 5` UTR CG34355 + chr3R 23820742 5` UTR CG34355 + chr3R_7_23820001 chr3R_23820001 RAL-409_95b 1141 chr3R 23835398 23835432 chr3R 23844557 23844577 roo 7 9161 3.0 1.5 2.2 2.2 9179 chr3R 23835398 intron CG34355 + chr3R 23839988 intron CG34355 + chr3R 23844577 intron CG34355 + chr3R_7_23835001 chr3R_23835001 RAL-409_95b 1142 chr3R 23944892 23944931 chr3R 23944996 23945008 6 95 5.5 2.0 3.8 1.2 116 chr3R 23944892 intron CG12268 - chr3R 23944950 intron CG12268 - chr3R 23945008 intron CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-409_95b 1143 chr3R 24076918 24076943 chr3R 24078379 24078402 hobo 5 1467 3.0 4.5 3.8 1.0 1484 chr3R 24076918 intron 4EHP - chr3R 24077660 intron 4EHP - chr3R 24078402 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-409_95b 1144 chr3R 24080597 24080641 chr3R 24080708 24080737 6 113 3.5 2.0 2.8 1.6 140 chr3R 24080597 intron 4EHP - chr3R 24080667 intron 4EHP - chr3R 24080737 intron 4EHP - chr3R_6_24080001 chr3R_24080001 RAL-409_95b 1145 chr3R 24100462 24100612 chr3R 24100554 24100833 6 206 1.5 1.5 1.5 2.4 371 chr3R 24100462 intron 4EHP - chr3R 24100648 intron 4EHP - chr3R 24100833 intron 4EHP - chr3R_6_24100001 chr3R_24100001 RAL-409_95b 1146 chr3R 24207214 24207245 chr3R 24212304 24212338 flea 4 5085 3.0 8.0 5.5 0.6 5124 chr3R 24207214 intron twin - chr3R 24209776 intron twin - chr3R 24212338 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-409_95b 1147 chr3R 24431595 24431625 chr3R 24431680 24431713 5 86 3.5 1.0 2.2 1.6 118 chr3R 24431595 intron nAChRalpha1 - chr3R 24431654 intron nAChRalpha1 - chr3R 24431713 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-409_95b 1148 chr3R 24624355 24624386 chr3R 24624464 24624471 5 97 2.0 3.5 2.8 1.3 116 chr3R 24624355 intron Syx18 - chr3R 24624413 intron Syx18 - chr3R 24624471 intron Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-409_95b 1149 chr3R 24670142 24670189 chr3R 24670246 24670270 4 93 1.0 1.5 1.2 1.8 128 chr3R 24670142 intron slo + chr3R 24670206 intron slo + chr3R 24670270 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-409_95b 1150 chr3R 24730090 24730113 chr3R 24732470 24732487 Doc 5 2379 3.0 0.0 1.5 2.0 2397 chr3R 24730090 intron tok + chr3R 24731288 intron tok + chr3R 24732487 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-409_95b 1151 chr3R 24789977 24790013 chr3R 24790140 24790147 5 156 3.0 4.0 3.5 1.1 170 chr3R 24789977 intron,5` UTR Ets96B +,CG13634 - chr3R 24790062 intron,5` UTR Ets96B +,CG13634 - chr3R 24790147 intron Ets96B + chr3R_5_24790001 chr3R_24790001 RAL-409_95b 1152 chr3R 24927110 24927150 chr3R 24931919 24931961 Doc 5 4804 1.5 0.5 1.0 2.5 4851 chr3R 24927110 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931961 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-409_95b 1153 chr3R 25209596 25209612 chr3R 25209680 25209693 8 90 2.0 2.5 2.2 2.5 97 chr3R 25209596 intron CG13654 + chr3R 25209644 intron CG13654 + chr3R 25209693 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-409_95b 1154 chr3R 25235811 25235847 chr3R 25235911 25235930 4 96 1.0 2.0 1.5 1.6 119 chr3R 25235811 intergenic CG10420 - chr3R 25235870 intergenic CG10420 - chr3R 25235930 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-409_95b 1155 chr3R 25302155 25302176 chr3R 25302358 25302373 5 201 14.0 7.5 10.8 0.4 218 chr3R 25302155 exon CG13659 + chr3R 25302264 exon CG13659 + chr3R 25302373 intergenic CG13659 +,CG31370 + chr3R_5_25300001 chr3R_25300001 RAL-409_95b 1156 chr3R 25368483 25368499 chr3R 25368597 25368618 6 120 3.0 0.0 1.5 2.4 135 chr3R 25368483 intron Fur1 - chr3R 25368550 intron Fur1 - chr3R 25368618 intron Fur1 - chr3R_6_25365001 chr3R_25365001 RAL-409_95b 1157 chr3R 25377078 25377123 chr3R 25377364 25377393 11 276 3.5 4.0 3.8 2.3 315 chr3R 25377078 intron Fur1 - chr3R 25377236 intron Fur1 - chr3R 25377393 intron Fur1 - chr3R_11_25375001 chr3R_25375001 RAL-409_95b 1158 chr3R 25411760 25411802 chr3R 25411876 25411902 5 110 1.0 2.0 1.5 2.0 142 chr3R 25411760 intron Fur1 - chr3R 25411831 intron Fur1 - chr3R 25411902 intron Fur1 - chr3R_5_25410001 chr3R_25410001 RAL-409_95b 1159 chr3R 25422057 25422097 chr3R 25422145 25422180 8 89 0.5 0.5 0.5 5.3 123 chr3R 25422057 intron Fur1 - chr3R 25422118 intron Fur1 - chr3R 25422180 intron Fur1 - chr3R_8_25420001 chr3R_25420001 RAL-409_95b 1160 chr3R 25431426 25431445 chr3R 25431517 25431551 5 96 0.5 1.0 0.8 2.8 125 chr3R 25431426 intron Fur1 - chr3R 25431488 intron Fur1 - chr3R 25431551 intron Fur1 - chr3R_5_25430001 chr3R_25430001 RAL-409_95b 1161 chr3R 25464143 25464174 chr3R 25464366 25464384 9 212 4.5 1.5 3.0 2.2 241 chr3R 25464143 intron Fur1 - chr3R 25464264 intron Fur1 - chr3R 25464384 intron Fur1 - chr3R_9_25460001 chr3R_25460001 RAL-409_95b 1162 chr3R 25526253 25526254 chr3R 25526328 25526351 4 89 2.0 1.5 1.8 1.4 98 chr3R 25526253 intron msi + chr3R 25526302 intron msi + chr3R 25526351 intron msi + chr3R_4_25525001 chr3R_25525001 RAL-409_95b 1163 chr3R 25716376 25716409 chr3R 25716453 25716490 4 82 2.5 3.0 2.8 1.1 114 chr3R 25716376 intron LpR2 - chr3R 25716433 intron LpR2 - chr3R 25716490 intron LpR2 - chr3R_4_25715001 chr3R_25715001 RAL-409_95b 1164 chr3R 25765884 25765909 chr3R 25765982 25765984 5 91 4.0 6.0 5.0 0.8 100 chr3R 25765884 intergenic not near genes chr3R 25765934 intergenic not near genes chr3R 25765984 intergenic not near genes chr3R_5_25765001 chr3R_25765001 RAL-409_95b 1165 chr3R 25801272 25801292 chr3R 25802258 25802283 5 984 3.0 4.0 3.5 1.1 1011 chr3R 25801272 intergenic not near genes chr3R 25801778 intergenic not near genes chr3R 25802283 intergenic not near genes chr3R_5_25800001 chr3R_25800001 RAL-409_95b 1166 chr3R 25832704 25832712 chr3R 25841882 25841914 roo 5 9190 4.5 4.5 4.5 0.9 9210 chr3R 25832704 exon alpha4GT2 + chr3R 25837309 intron alpha4GT2 + chr3R 25841914 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-409_95b 1167 chr3R 25900881 25900901 chr3R 25903584 25903624 9 2709 22.0 24.0 23.0 0.4 2743 chr3R 25900881 exon CG31091 + chr3R 25902252 intergenic CG31091 +,CG31089 + chr3R 25903624 exon,intron CG31089 +,CR43259 - chr3R_9_25900001 chr3R_25900001 RAL-409_95b 1168 chr3R 25920857 25920882 chr3R 25920939 25920976 6 90 6.5 1.0 3.8 1.2 119 chr3R 25920857 3` UTR CG42235 + chr3R 25920916 3` UTR CG42235 + chr3R 25920976 3` UTR CG42235 + chr3R_6_25920001 chr3R_25920001 RAL-409_95b 1169 chr3R 25951994 25952010 chr3R 25952154 25952170 4 158 1.0 1.5 1.2 1.8 176 chr3R 25951994 intron CCAP-R - chr3R 25952082 intron CCAP-R - chr3R 25952170 intron CCAP-R - chr3R_4_25950001 chr3R_25950001 RAL-409_95b 1170 chr3R 26093833 26093873 chr3R 26093931 26093955 7 86 3.5 6.5 5.0 1.2 122 chr3R 26093833 intron dys - chr3R 26093894 intron dys - chr3R 26093955 intron dys - chr3R_7_26090001 chr3R_26090001 RAL-409_95b 1171 chr3R 26104067 26104103 chr3R 26105126 26105169 5 1065 16.0 15.0 15.5 0.3 1102 chr3R 26104067 intergenic not near genes chr3R 26104618 intergenic not near genes chr3R 26105169 intergenic not near genes chr3R_5_26100001 chr3R_26100001 RAL-409_95b 1172 chr3R 26121953 26121970 chr3R 26122049 26122087 5 106 0.5 2.5 1.5 2.0 134 chr3R 26121953 intron CG31324 + chr3R 26122020 intron CG31324 + chr3R 26122087 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-409_95b 1173 chr3R 26122461 26122470 chr3R 26122540 26122566 5 85 5.0 3.0 4.0 1.0 105 chr3R 26122461 intron CG31324 + chr3R 26122514 intron CG31324 + chr3R 26122566 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-409_95b 1174 chr3R 26256010 26256026 chr3R 26256094 26256095 6 81 0.5 3.0 1.8 2.1 85 chr3R 26256010 intron Ald - chr3R 26256052 intron Ald - chr3R 26256095 intron Ald - chr3R_6_26255001 chr3R_26255001 RAL-409_95b 1175 chr3R 26294711 26294740 chr3R 26294794 26294836 15 84 4.5 0.5 2.5 4.3 125 chr3R 26294711 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294836 intergenic not near genes chr3R_15_26290001 chr3R_26290001 RAL-409_95b 1176 chr3R 26310624 26310663 chr3R 26310732 26310747 5 97 1.5 3.5 2.5 1.4 123 chr3R 26310624 intergenic not near genes chr3R 26310686 intergenic not near genes chr3R 26310747 intergenic not near genes chr3R_5_26310001 chr3R_26310001 RAL-409_95b 1177 chr3R 26343023 26343048 chr3R 26343540 26343569 4 520 1.5 3.0 2.2 1.2 546 chr3R 26343023 intron CG33970 + chr3R 26343296 intron CG33970 + chr3R 26343569 intron CG33970 + chr3R_4_26340001 chr3R_26340001 RAL-409_95b 1178 chr3R 26376329 26376353 chr3R 26385491 26385518 roo 4 9164 3.0 0.5 1.8 1.4 9189 chr3R 26376329 intergenic not near genes chr3R 26380924 intergenic not near genes chr3R 26385518 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-409_95b 1179 chr3R 26510522 26510527 chr3R 26519577 26519594 roo 5 9063 2.0 1.5 1.8 1.8 9072 chr3R 26510522 intron plum - chr3R 26515058 intron plum - chr3R 26519594 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-409_95b 1180 chr3R 26553227 26553235 chr3R 26553720 26553758 5 506 2.5 2.5 2.5 1.4 531 chr3R 26553227 intron scrib + chr3R 26553492 intron scrib + chr3R 26553758 intron scrib + chr3R_5_26550001 chr3R_26550001 RAL-409_95b 1181 chr3R 26558325 26558361 chr3R 26565640 26565674 Stalker4 10 7316 1.5 3.5 2.5 2.9 7349 chr3R 26558325 intron scrib + chr3R 26562000 intron scrib + chr3R 26565674 intron scrib + chr3R_10_26560001 chr3R_26560001 RAL-409_95b 1182 chr3R 26607733 26607768 chr3R 26607814 26607864 7 83 3.0 2.5 2.8 1.8 131 chr3R 26607733 5` UTR CR44951 + chr3R 26607798 5` UTR CR44951 + chr3R 26607864 5` UTR CR44951 + chr3R_7_26605001 chr3R_26605001 RAL-409_95b 1183 chr3R 26641640 26641662 chr3R 26641726 26641741 4 88 6.0 3.0 4.5 0.7 101 chr3R 26641640 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641741 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-409_95b 1184 chr3R 26642741 26642760 chr3R 26643140 26643166 jockey 6 398 8.0 3.5 5.8 0.9 425 chr3R 26642741 intergenic not near genes chr3R 26642954 intergenic not near genes chr3R 26643166 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-409_95b 1185 chr3R 26660643 26660677 chr3R 26660731 26660779 8 83 0.5 2.0 1.2 3.6 136 chr3R 26660643 intron beat-VII - chr3R 26660711 intron beat-VII - chr3R 26660779 intron beat-VII - chr3R_8_26660001 chr3R_26660001 RAL-409_95b 1186 chr3R 26710816 26710839 chr3R 26710920 26710942 4 103 7.0 5.5 6.2 0.6 126 chr3R 26710816 intron amon - chr3R 26710879 intron amon - chr3R 26710942 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-409_95b 1187 chr3R 26710843 26710853 chr3R 26710917 26710943 5 87 5.0 5.5 5.2 0.8 100 chr3R 26710843 intron amon - chr3R 26710893 intron amon - chr3R 26710943 intron amon - chr3R_5_26710001 chr3R_26710001 RAL-409_95b 1188 chr3R 26770220 26770274 chr3R 26770317 26770350 12 87 2.0 3.5 2.8 3.2 130 chr3R 26770220 intergenic CR45563 + chr3R 26770285 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_12_26770001 chr3R_26770001 RAL-409_95b 1189 chr3R 26810543 26810582 chr3R 26811036 26811087 roo 6 493 2.5 4.0 3.2 1.4 544 chr3R 26810543 intron Tl + chr3R 26810815 intron Tl + chr3R 26811087 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-409_95b 1190 chr3R 26917285 26917320 chr3R 26917388 26917397 6 88 1.5 3.5 2.5 1.7 112 chr3R 26917285 intron sda + chr3R 26917341 intron sda + chr3R 26917397 intron sda + chr3R_6_26915001 chr3R_26915001 RAL-409_95b 1191 chr3R 26921372 26921397 chr3R 26921569 26921610 9 203 4.5 2.0 3.2 2.1 238 chr3R 26921372 intron sda + chr3R 26921491 intron sda + chr3R 26921610 intron sda + chr3R_9_26920001 chr3R_26920001 RAL-409_95b 1192 chr3R 26953446 26953479 chr3R 26953539 26953563 5 95 5.5 4.0 4.8 0.9 117 chr3R 26953446 intron CG6330 - chr3R 26953504 intron CG6330 - chr3R 26953563 intron CG6330 - chr3R_5_26950001 chr3R_26950001 RAL-409_95b 1193 chr3R 27007412 27007426 chr3R 27016539 27016562 roo 6 9133 3.0 3.5 3.2 1.4 9150 chr3R 27007412 intron RYa-R + chr3R 27011987 intron RYa-R + chr3R 27016562 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-409_95b 1194 chr3R 27108775 27108796 chr3R 27108858 27108902 4 94 1.5 5.0 3.2 1.0 127 chr3R 27108775 3` UTR gb - chr3R 27108838 3` UTR gb - chr3R 27108902 3` UTR gb - chr3R_4_27105001 chr3R_27105001 RAL-409_95b 1195 chr3R 27342792 27342823 chr3R 27351374 27351403 Tirant 4 8583 1.5 1.5 1.5 1.6 8611 chr3R 27342792 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351403 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-409_95b 1196 chr3R 27377488 27377500 chr3R 27377572 27377608 4 88 4.0 4.5 4.2 0.8 120 chr3R 27377488 3` UTR side - chr3R 27377548 3` UTR side - chr3R 27377608 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-409_95b 1197 chr3R 27595037 27595064 chr3R 27595140 27595166 4 98 3.0 3.0 3.0 1.0 129 chr3R 27595037 intron CG5639 - chr3R 27595102 intron CG5639 - chr3R 27595166 intron CG5639 - chr3R_4_27595001 chr3R_27595001 RAL-409_95b 1198 chr3R 27639296 27639318 chr3R 27639784 27639792 4 484 4.5 1.5 3.0 1.0 496 chr3R 27639296 3` UTR Mtl + chr3R 27639544 3` UTR Mtl + chr3R 27639792 3` UTR Mtl + chr3R_4_27635001 chr3R_27635001 RAL-409_95b 1199 chr3R 27706780 27706799 chr3R 27706853 27706891 4 79 3.0 3.5 3.2 1.0 111 chr3R 27706780 intergenic CG12428 -,CG12877 + chr3R 27706836 intergenic CG12428 -,CG12877 + chr3R 27706891 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-409_95b 1200 chr3R 27799937 27799958 chr3R 27800018 27800020 6 86 6.0 1.0 3.5 1.3 83 chr3R 27799937 intron CG34353 - chr3R 27799978 intron CG34353 - chr3R 27800020 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-409_95b 1201 chr3R 27875706 27875725 chr3R 27882763 27882800 297 6 7060 3.0 6.5 4.8 1.0 7094 chr3R 27875706 intron CG34353 - chr3R 27879253 intron CG34353 - chr3R 27882800 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-409_95b 1202 chr3R 27992410 27992412 chr3R 27992491 27992509 4 86 4.5 7.0 5.8 0.6 99 chr3R 27992410 intergenic not near genes chr3R 27992460 intergenic not near genes chr3R 27992509 intergenic not near genes chr3R_4_27990001 chr3R_27990001 RAL-409_95b 1203 chr3R 27992416 27992423 chr3R 27992488 27992520 4 79 4.0 6.0 5.0 0.7 104 chr3R 27992416 intergenic not near genes chr3R 27992468 intergenic not near genes chr3R 27992520 intergenic not near genes chr3R_4_27990001 chr3R_27990001 RAL-409_95b 1204 chr3R 27999417 27999440 chr3R 27999489 27999521 4 81 1.5 2.0 1.8 1.4 104 chr3R 27999417 intergenic not near genes chr3R 27999469 intergenic not near genes chr3R 27999521 intergenic not near genes chr3R_4_27995001 chr3R_27995001 RAL-409_95b 1205 chr3R 28139853 28139882 chr3R 28140648 28140674 7 791 2.5 2.0 2.2 2.2 821 chr3R 28139853 intergenic not near genes chr3R 28140264 intergenic not near genes chr3R 28140674 intergenic not near genes chr3R_7_28140001 chr3R_28140001 RAL-409_95b 1206 chr3R 28173681 28173698 chr3R 28181108 28181132 mdg1 4 7431 1.5 4.0 2.8 1.1 7451 chr3R 28173681 intron CG34354 + chr3R 28177406 intron CG34354 + chr3R 28181132 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-409_95b 1207 chr3R 28253349 28253373 chr3R 28255846 28255888 jockey 6 2517 2.0 3.5 2.8 1.6 2539 chr3R 28253349 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255888 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-409_95b 1208 chr3R 28262657 28262685 chr3R 28262753 28262781 4 91 3.0 6.0 4.5 0.7 124 chr3R 28262657 intergenic CG43125 - chr3R 28262719 intergenic CG43125 - chr3R 28262781 exon CG43125 - chr3R_4_28260001 chr3R_28260001 RAL-409_95b 1209 chr3R 28300163 28300191 chr3R 28300250 28300280 7 93 0.0 2.5 1.2 3.2 117 chr3R 28300163 intergenic not near genes chr3R 28300222 intergenic not near genes chr3R 28300280 intergenic not near genes chr3R_7_28300001 chr3R_28300001 RAL-409_95b 1210 chr3R 28305291 28305340 chr3R 28306481 28306512 9 1177 2.5 2.0 2.2 2.8 1221 chr3R 28305291 intergenic not near genes chr3R 28305902 intergenic not near genes chr3R 28306512 intergenic not near genes chr3R_9_28305001 chr3R_28305001 RAL-409_95b 1211 chr3R 28327366 28327393 chr3R 28327737 28327767 4 376 2.0 2.5 2.2 1.2 401 chr3R 28327366 intron larp - chr3R 28327566 intron larp - chr3R 28327767 intron larp - chr3R_4_28325001 chr3R_28325001 RAL-409_95b 1212 chr3R 28407718 28407730 chr3R 28407790 28407819 5 90 2.0 1.5 1.8 1.8 101 chr3R 28407718 intergenic not near genes chr3R 28407768 intergenic not near genes chr3R 28407819 intergenic not near genes chr3R_5_28405001 chr3R_28405001 RAL-409_95b 1213 chr3R 28640312 28640364 chr3R 28640414 28640466 7 91 0.5 2.0 1.2 3.2 154 chr3R 28640312 intergenic not near genes chr3R 28640389 intergenic not near genes chr3R 28640466 intergenic not near genes chr3R_7_28640001 chr3R_28640001 RAL-409_95b 1214 chr3R 21907534 21907536 chr3R 28831801 28831802 56 6924267 17.5 7.5 12.5 4.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_56_25365001 chr3R_25365001 RAL-409_95b 1215 chr3R 29009948 29009986 chr3R 29010062 29010101 7 116 1.5 2.0 1.8 2.5 153 chr3R 29009948 intron wat - chr3R 29010024 intron wat - chr3R 29010101 intron wat - chr3R_7_29010001 chr3R_29010001 RAL-409_95b 1216 chr3R 29070037 29070080 chr3R 29070138 29070161 8 83 3.5 1.0 2.2 2.5 124 chr3R 29070037 intron CG11873 + chr3R 29070099 intron CG11873 + chr3R 29070161 intron CG11873 + chr3R_8_29070001 chr3R_29070001 RAL-409_95b 1217 chr3R 29079378 29079410 chr3R 29080750 29080784 NOF 9 1376 5.5 2.5 4.0 1.8 1406 chr3R 29079378 intron CG11873 + chr3R 29080081 intron CG11873 + chr3R 29080784 intron CG11873 + chr3R_9_29080001 chr3R_29080001 RAL-409_95b 1218 chr3R 29203828 29203846 chr3R 29203928 29203931 4 96 4.0 0.0 2.0 1.3 103 chr3R 29203828 5` UTR CG14508 - chr3R 29203880 intron CG14508 - chr3R 29203931 intron CG14508 - chr3R_4_29200001 chr3R_29200001 RAL-409_95b 1219 chr3R 29213058 29213093 chr3R 29213142 29213181 13 87 3.0 5.0 4.0 2.6 123 chr3R 29213058 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213181 intergenic not near genes chr3R_13_29210001 chr3R_29210001 RAL-409_95b 1220 chr3R 29237268 29237285 chr3R 29239270 29239273 5 2015 12.0 5.5 8.8 0.5 2005 chr3R 29237268 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239273 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-409_95b 1221 chr3R 29319827 29319854 chr3R 29320149 29320193 jockey 5 324 1.0 3.0 2.0 1.7 366 chr3R 29319827 intergenic Cnx99A - chr3R 29320010 intergenic Cnx99A - chr3R 29320193 intergenic not near genes chr3R_5_29320001 chr3R_29320001 RAL-409_95b 1222 chr3R 29332337 29332366 chr3R 29332445 29332452 5 90 1.5 2.5 2.0 1.7 115 chr3R 29332337 intergenic not near genes chr3R 29332394 intergenic not near genes chr3R 29332452 intergenic not near genes chr3R_5_29330001 chr3R_29330001 RAL-409_95b 1223 chr3R 29406627 29406645 chr3R 29407904 29407920 jockey 5 1284 3.5 3.0 3.2 1.2 1293 chr3R 29406627 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407920 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-409_95b 1224 chr3R 29449361 29449387 chr3R 29449439 29449461 6 84 1.5 3.5 2.5 1.7 100 chr3R 29449361 intron Ptp99A + chr3R 29449411 intron Ptp99A + chr3R 29449461 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-409_95b 1225 chr3R 29472012 29472037 chr3R 29472102 29472142 6 97 3.0 2.0 2.5 1.7 130 chr3R 29472012 intron Ptp99A + chr3R 29472077 intron Ptp99A + chr3R 29472142 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-409_95b 1226 chr3R 29505879 29505924 chr3R 29505975 29506021 4 96 2.0 3.0 2.5 1.1 142 chr3R 29505879 intergenic not near genes chr3R 29505950 intergenic not near genes chr3R 29506021 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-409_95b 1227 chr3R 29566363 29566412 chr3R 29566459 29566489 8 86 0.5 0.0 0.2 6.7 126 chr3R 29566363 intergenic not near genes chr3R 29566426 intergenic not near genes chr3R 29566489 intergenic not near genes chr3R_8_29565001 chr3R_29565001 RAL-409_95b 1228 chr3R 29590378 29590401 chr3R 29590468 29590514 8 97 2.0 1.0 1.5 3.2 136 chr3R 29590378 intron CG31041 - chr3R 29590446 intron CG31041 - chr3R 29590514 exon CG31041 - chr3R_8_29590001 chr3R_29590001 RAL-409_95b 1229 chr3R 29592724 29592762 chr3R 29592816 29592843 5 91 2.0 1.0 1.5 2.0 119 chr3R 29592724 intron alph + chr3R 29592784 intron alph + chr3R 29592843 intron alph + chr3R_5_29590001 chr3R_29590001 RAL-409_95b 1230 chr3R 29718144 29718174 chr3R 29718225 29718270 9 90 1.0 3.5 2.2 2.8 126 chr3R 29718144 intergenic not near genes chr3R 29718207 intergenic CG15506 + chr3R 29718270 intergenic CG15506 + chr3R_9_29715001 chr3R_29715001 RAL-409_95b 1231 chr3R 29738245 29738291 chr3R 29739732 29739762 hobo 9 1475 2.5 2.0 2.2 2.8 1517 chr3R 29738245 intergenic CG1969 +,CG7598 + chr3R 29739004 intron CG1969 + chr3R 29739762 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-409_95b 1232 chr3R 29882023 29882049 chr3R 29891177 29891226 roo 8 9160 4.5 2.0 3.2 1.9 9203 chr3R 29882023 intron CG31038 + chr3R 29886624 intron CG31038 + chr3R 29891226 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-409_95b 1233 chr3R 29963478 29963511 chr3R 29963585 29963624 6 109 0.0 4.0 2.0 2.0 146 chr3R 29963478 intron TkR99D - chr3R 29963551 intron TkR99D - chr3R 29963624 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-409_95b 1234 chr3R 30013661 30013700 chr3R 30013764 30013787 6 92 0.5 3.0 1.8 2.1 126 chr3R 30013661 intron CG7920 - chr3R 30013724 intron CG7920 - chr3R 30013787 intron CG7920 - chr3R_6_30010001 chr3R_30010001 RAL-409_95b 1235 chr3R 30136964 30136981 chr3R 30137043 30137062 9 87 0.0 2.0 1.0 4.5 98 chr3R 30136964 exon AdoR - chr3R 30137013 intron AdoR - chr3R 30137062 intron AdoR - chr3R_9_30135001 chr3R_30135001 RAL-409_95b 1236 chr3R 30287104 30287131 chr3R 30287219 30287263 5 121 3.0 1.5 2.2 1.6 159 chr3R 30287104 intron hdc + chr3R 30287184 intron hdc + chr3R 30287263 intron hdc + chr3R_5_30285001 chr3R_30285001 RAL-409_95b 1237 chr3R 30310884 30310911 chr3R 30310973 30310994 4 85 3.0 1.0 2.0 1.3 110 chr3R 30310884 intron hdc + chr3R 30310939 intron hdc + chr3R 30310994 intron hdc + chr3R_4_30310001 chr3R_30310001 RAL-409_95b 1238 chr3R 30317326 30317353 chr3R 30324918 30324945 roo 6 7594 0.5 1.5 1.0 3.0 7619 chr3R 30317326 intron hdc + chr3R 30321136 intron hdc + chr3R 30324945 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-409_95b 1239 chr3R 30344976 30345003 chr3R 30345052 30345081 11 81 2.5 1.0 1.8 3.9 105 chr3R 30344976 intron hdc + chr3R 30345028 intron hdc + chr3R 30345081 intron hdc + chr3R_11_30345001 chr3R_30345001 RAL-409_95b 1240 chr3R 30440684 30440720 chr3R 30440948 30440995 8 264 4.5 3.5 4.0 1.6 311 chr3R 30440684 intron CG15537 - chr3R 30440840 intron CG15537 - chr3R 30440995 intron CG15537 - chr3R_8_30440001 chr3R_30440001 RAL-409_95b 1241 chr3R 30456382 30456423 chr3R 30456482 30456523 4 99 1.5 3.0 2.2 1.2 141 chr3R 30456382 intergenic CG2224 - chr3R 30456452 3` UTR CG2224 - chr3R 30456523 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-409_95b 1242 chr3R 30458008 30458050 chr3R 30458093 30458134 10 89 1.5 3.5 2.5 2.9 126 chr3R 30458008 intron CG2224 - chr3R 30458071 intron CG2224 - chr3R 30458134 intron CG2224 - chr3R_10_30455001 chr3R_30455001 RAL-409_95b 1243 chr3R 30471896 30471909 chr3R 30471985 30472005 4 94 6.0 5.5 5.8 0.6 109 chr3R 30471896 intron PH4alphaEFB + chr3R 30471950 intron PH4alphaEFB + chr3R 30472005 intron PH4alphaEFB + chr3R_4_30470001 chr3R_30470001 RAL-409_95b 1244 chr3R 30471910 30471935 chr3R 30471981 30472012 10 81 3.5 4.5 4.0 2.0 102 chr3R 30471910 intron PH4alphaEFB + chr3R 30471961 intron PH4alphaEFB + chr3R 30472012 intron PH4alphaEFB + chr3R_10_30470001 chr3R_30470001 RAL-409_95b 1245 chr3R 30480459 30480509 chr3R 30482947 30482985 jockey 7 2481 1.0 8.0 4.5 1.3 2526 chr3R 30480459 intron PH4alphaEFB + chr3R 30481722 intron PH4alphaEFB + chr3R 30482985 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-409_95b 1246 chr3R 30495179 30495190 chr3R 30495291 30495292 4 112 1.0 1.5 1.2 1.8 113 chr3R 30495179 intron PH4alphaMP - chr3R 30495236 intron PH4alphaMP - chr3R 30495292 intron PH4alphaMP - chr3R_4_30495001 chr3R_30495001 RAL-409_95b 1247 chr3R 30498416 30498425 chr3R 30498615 30498645 5 213 0.0 7.5 3.8 1.0 229 chr3R 30498416 intron PH4alphaNE1 - chr3R 30498530 intron PH4alphaNE1 - chr3R 30498645 intron PH4alphaNE1 - chr3R_5_30495001 chr3R_30495001 RAL-409_95b 1248 chr3R 30544667 30544676 chr3R 30544734 30544734 5 71 1.5 1.0 1.2 2.3 67 chr3R 30544667 intron tmod + chr3R 30544700 intron tmod + chr3R 30544734 intron tmod + chr3R_5_30540001 chr3R_30540001 RAL-409_95b 1249 chr3R 30551267 30551297 chr3R 30551352 30551352 6 76 1.0 3.0 2.0 2.0 85 chr3R 30551267 intron tmod + chr3R 30551310 intron tmod + chr3R 30551352 intron tmod + chr3R_6_30550001 chr3R_30550001 RAL-409_95b 1250 chr3R 30592505 30592532 chr3R 30592622 30592644 5 115 2.5 4.0 3.2 1.2 139 chr3R 30592505 intergenic CG2246 - chr3R 30592574 intergenic CG2246 - chr3R 30592644 intergenic CG2246 - chr3R_5_30590001 chr3R_30590001 RAL-409_95b 1251 chr3R 30627616 30627635 chr3R 30627688 30627705 7 70 2.0 2.5 2.2 2.2 89 chr3R 30627616 exon CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627705 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-409_95b 1252 chr3R 30679515 30679552 chr3R 30686986 30687031 blood 7 7477 3.0 4.0 3.5 1.6 7516 chr3R 30679515 intergenic not near genes chr3R 30683273 intergenic not near genes chr3R 30687031 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-409_95b 1253 chr3R 30690172 30690192 chr3R 30690256 30690294 4 92 3.5 5.0 4.2 0.8 122 chr3R 30690172 intergenic Spn100A + chr3R 30690233 intergenic Spn100A + chr3R 30690294 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-409_95b 1254 chr3R 30859391 30859423 chr3R 30859489 30859503 4 92 3.5 2.0 2.8 1.1 112 chr3R 30859391 intergenic not near genes chr3R 30859447 intergenic not near genes chr3R 30859503 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-409_95b 1255 chr3R 30985687 30985703 chr3R 30985772 30985789 5 88 3.0 2.5 2.8 1.3 102 chr3R 30985687 intron 5-HT7 - chr3R 30985738 intron 5-HT7 - chr3R 30985789 intron 5-HT7 - chr3R_5_30985001 chr3R_30985001 RAL-409_95b 1256 chr3R 31042091 31042142 chr3R 31042198 31042221 8 91 1.5 1.0 1.2 3.6 130 chr3R 31042091 intron CanA1 + chr3R 31042156 intron CanA1 + chr3R 31042221 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-409_95b 1257 chr3R 31067004 31067054 chr3R 31067150 31067157 4 130 1.0 1.0 1.0 2.0 153 chr3R 31067004 intron Sox100B + chr3R 31067080 intron Sox100B + chr3R 31067157 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-409_95b 1258 chr3R 31074232 31074260 chr3R 31081830 31081861 springer 4 7604 3.0 2.0 2.5 1.1 7629 chr3R 31074232 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081861 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-409_95b 1259 chr3R 31146745 31146782 chr3R 31146826 31146861 4 83 4.0 4.0 4.0 0.8 116 chr3R 31146745 intron Gycbeta100B + chr3R 31146803 intron Gycbeta100B + chr3R 31146861 intron Gycbeta100B + chr3R_4_31145001 chr3R_31145001 RAL-409_95b 1260 chr3R 31279389 31279408 chr3R 31285563 31285594 diver 5 6184 3.5 2.5 3.0 1.2 6205 chr3R 31279389 intergenic not near genes chr3R 31282492 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-409_95b 1261 chr3R 31348053 31348092 chr3R 31348136 31348156 8 79 0.5 2.5 1.5 3.2 103 chr3R 31348053 intron CG34347 + chr3R 31348104 intron CG34347 + chr3R 31348156 intron CG34347 + chr3R_8_31345001 chr3R_31345001 RAL-409_95b 1262 chr3R 31413091 31413123 chr3R 31418293 31418326 copia 6 5202 2.0 0.5 1.2 2.7 5235 chr3R 31413091 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418326 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-409_95b 1263 chr3R 31426878 31426910 chr3R 31426975 31427022 6 99 4.0 2.5 3.2 1.4 144 chr3R 31426878 intron Gprk2 + chr3R 31426950 intron Gprk2 + chr3R 31427022 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-409_95b 1264 chr3R 31435351 31435361 chr3R 31435522 31435532 6 172 6.0 4.0 5.0 1.0 181 chr3R 31435351 intron Gprk2 + chr3R 31435442 intron Gprk2 + chr3R 31435532 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-409_95b 1265 chr3R 31435367 31435391 chr3R 31435513 31435563 5 161 3.0 3.0 3.0 1.2 196 chr3R 31435367 intron Gprk2 + chr3R 31435465 intron Gprk2 + chr3R 31435563 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-409_95b 1266 chr3R 31691514 31691546 chr3R 31696296 31696311 Doc 6 4769 4.5 1.5 3.0 1.5 4797 chr3R 31691514 intergenic not near genes chr3R 31693912 intergenic not near genes chr3R 31696311 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-409_95b 1267 chr3R 31726646 31726692 chr3R 31726742 31726780 6 87 1.0 4.5 2.8 1.6 134 chr3R 31726646 intron ttk + chr3R 31726713 intron ttk + chr3R 31726780 intron ttk + chr3R_6_31725001 chr3R_31725001 RAL-409_95b 1268 chr3R 31774853 31774895 chr3R 31775016 31775034 7 156 2.0 2.5 2.2 2.2 181 chr3R 31774853 3` UTR sip3 + chr3R 31774944 3` UTR sip3 + chr3R 31775034 3` UTR sip3 + chr3R_7_31770001 chr3R_31770001 RAL-409_95b 1269 chr3R 31880297 31880326 chr3R 31880374 31880421 7 80 2.0 3.5 2.8 1.8 124 chr3R 31880297 intron heph - chr3R 31880359 intron heph - chr3R 31880421 intron heph - chr3R_7_31880001 chr3R_31880001 RAL-409_95b 1270 chr3R 31911681 31911810 chr3R 31911769 31911889 11 85 0.0 0.0 0.0 11.0 208 chr3R 31911681 intron heph - chr3R 31911785 intron heph - chr3R 31911889 intron heph - chr3R_11_31910001 chr3R_31910001 RAL-409_95b 1271 chr3R 31953147 31953177 chr3R 31953223 31953268 6 80 4.5 2.0 3.2 1.4 121 chr3R 31953147 intron heph - chr3R 31953208 intron heph - chr3R 31953268 intron heph - chr3R_6_31950001 chr3R_31950001 RAL-409_95b 1272 chr3R 31997984 31998001 chr3R 32005472 32005491 blood 4 7482 8.0 4.5 6.2 0.6 7507 chr3R 31997984 intron heph - chr3R 32001738 intron heph - chr3R 32005491 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-409_95b 1273 chr3R 31998002 31998020 chr3R 32005471 32005487 blood 7 7477 5.0 4.5 4.8 1.2 7485 chr3R 31998002 intron heph - chr3R 32001744 intron heph - chr3R 32005487 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-409_95b 1274 chr3R 32013287 32013297 chr3R 32013400 32013418 6 116 3.0 0.5 1.8 2.1 131 chr3R 32013287 intron,5` UTR heph -,CR45556 + chr3R 32013352 intron,5` UTR heph -,CR45556 + chr3R 32013418 intron heph - chr3R_6_32010001 chr3R_32010001 RAL-409_95b 1275 chr4 959605 959651 chr4 959804 959836 8 191 2.5 2.5 2.5 2.3 231 chr4 959605 intergenic CR44030 +,CR45201 - chr4 959720 5` UTR CR44030 + chr4 959836 5` UTR CR44030 + chr4_8_955001 chr4_955001 RAL-409_95b 1276 chr4 972489 972517 chr4 972586 972594 4 89 0.5 2.5 1.5 1.6 105 chr4 972489 intron fuss - chr4 972542 intron fuss - chr4 972594 intron fuss - chr4_4_970001 chr4_970001 RAL-409_95b 1277 chr4 1231214 1231248 chr4 1231365 1231397 6 144 1.5 1.5 1.5 2.4 183 chr4 1231214 intron Caps + chr4 1231306 intron Caps + chr4 1231397 intron Caps + chr4_6_1230001 chr4_1230001 RAL-409_95b 1278 chrX 295842 295876 chrX 303482 303496 412 9 7630 1.0 5.0 3.0 2.2 7654 chrX 295842 intron CG3777 + chrX 299669 intron CG3777 + chrX 303496 intron CG3777 + chrX_9_295001 chrX_295001 RAL-409_95b 1279 chrX 428415 428452 chrX 434604 434657 3S18 8 6191 2.0 0.0 1.0 4.0 6242 chrX 428415 intron CG32816 - chrX 431536 intron CG32816 - chrX 434657 intron CG32816 - chrX_8_430001 chrX_430001 RAL-409_95b 1280 chrX 551425 551446 chrX 559005 559007 412 4 7576 4.0 3.5 3.8 0.8 7582 chrX 551425 intron Appl + chrX 555216 intron Appl + chrX 559007 intron Appl + chrX_4_555001 chrX_555001 RAL-409_95b 1281 chrX 602826 602848 chrX 602916 602968 7 105 2.0 4.0 3.0 1.8 142 chrX 602826 intron CG13366 - chrX 602897 intron CG13366 - chrX 602968 intron CG13366 - chrX_7_600001 chrX_600001 RAL-409_95b 1282 chrX 677408 677443 chrX 677533 677548 7 117 2.5 4.0 3.2 1.7 140 chrX 677408 intergenic not near genes chrX 677478 intergenic not near genes chrX 677548 intergenic not near genes chrX_7_675001 chrX_675001 RAL-409_95b 1283 chrX 827606 827627 chrX 835394 835434 roo 4 7794 2.5 4.0 3.2 1.0 7828 chrX 827606 intron CG43867 - chrX 831520 intron CG43867 - chrX 835434 intron CG43867 - chrX_4_830001 chrX_830001 RAL-409_95b 1284 chrX 906702 906734 chrX 908495 908536 S-element 5 1791 1.0 3.0 2.0 1.7 1834 chrX 906702 intron CG43867 - chrX 907619 intron CG43867 - chrX 908536 intron CG43867 - chrX_5_905001 chrX_905001 RAL-409_95b 1285 chrX 1053119 1053120 chrX 16983076 16983077 5 15929957 7.0 7.5 7.2 0.6 15929958 chrX 1053119 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-409_95b 1286 chrX 1627975 1627992 chrX 1635442 1635467 gtwin 4 7470 2.0 3.5 2.8 1.1 7492 chrX 1627975 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-409_95b 1287 chrX 1903330 1903353 chrX 1903431 1903439 4 96 4.0 2.0 3.0 1.0 109 chrX 1903330 5` UTR CR43864 + chrX 1903384 5` UTR CR43864 + chrX 1903439 5` UTR CR43864 + chrX_4_1900001 chrX_1900001 RAL-409_95b 1288 chrX 2578814 2578844 chrX 2578907 2578936 8 96 3.0 6.0 4.5 1.5 122 chrX 2578814 intergenic Pdfr +,Vha36-3 - chrX 2578875 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-409_95b 1289 chrX 2664410 2664420 chrX 2665530 2665541 1360 4 1130 1.5 2.0 1.8 1.4 1131 chrX 2664410 intron sgg + chrX 2664976 intron sgg + chrX 2665541 intron sgg + chrX_4_2660001 chrX_2660001 RAL-409_95b 1290 chrX 2844883 2844931 chrX 2852312 2852351 mdg1 5 7418 1.5 5.0 3.2 1.2 7468 chrX 2844883 intron kirre + chrX 2848617 intron kirre + chrX 2852351 intron kirre + chrX_5_2845001 chrX_2845001 RAL-409_95b 1291 chrX 2917090 2917113 chrX 2917173 2917191 6 84 1.5 1.0 1.2 2.7 101 chrX 2917090 intron kirre + chrX 2917140 intron kirre + chrX 2917191 intron kirre + chrX_6_2915001 chrX_2915001 RAL-409_95b 1292 chrX 3031160 3031190 chrX 3031239 3031276 5 90 1.5 1.0 1.2 2.3 116 chrX 3031160 intron kirre + chrX 3031218 intron kirre + chrX 3031276 intron kirre + chrX_5_3030001 chrX_3030001 RAL-409_95b 1293 chrX 3058013 3058052 chrX 3058274 3058291 pogo 4 251 2.5 2.0 2.2 1.2 278 chrX 3058013 intron kirre + chrX 3058152 intron kirre + chrX 3058291 intron kirre + chrX_4_3055001 chrX_3055001 RAL-409_95b 1294 chrX 3109430 3109476 chrX 3109527 3109552 7 85 1.5 2.0 1.8 2.5 122 chrX 3109430 intron kirre + chrX 3109491 intron kirre + chrX 3109552 intron kirre + chrX_7_3105001 chrX_3105001 RAL-409_95b 1295 chrX 3208163 3208172 chrX 3208240 3208257 4 87 2.0 1.5 1.8 1.4 94 chrX 3208163 intron dnc + chrX 3208210 intron dnc + chrX 3208257 intron dnc + chrX_4_3205001 chrX_3205001 RAL-409_95b 1296 chrX 3408992 3409016 chrX 3409070 3409109 9 85 0.0 3.5 1.8 3.2 117 chrX 3408992 intron,intron CR44999 +,CG12535 - chrX 3409050 intron,intron CR44999 +,CG12535 - chrX 3409109 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-409_95b 1297 chrX 3415014 3415047 chrX 3421203 3421228 3S18 6 6188 0.5 3.0 1.8 2.1 6214 chrX 3415014 intron,intron CR44999 +,CG12535 - chrX 3418121 intron,intron CR44999 +,CG12535 - chrX 3421228 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-409_95b 1298 chrX 3459972 3460007 chrX 3460062 3460103 7 86 2.5 0.0 1.2 3.2 131 chrX 3459972 intron,intron CR44999 +,CG16782 - chrX 3460038 intron,5` UTR CR44999 +,CG16782 - chrX 3460103 intron,5` UTR CR44999 +,CG16782 - chrX_7_3460001 chrX_3460001 RAL-409_95b 1299 chrX 3493094 3493124 chrX 3502250 3502289 roo 6 9162 1.5 2.0 1.8 2.1 9195 chrX 3493094 intron,intron CR44999 +,Gas8 - chrX 3497692 intron,intron CR44999 +,Gas8 - chrX 3502289 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-409_95b 1300 chrX 3537582 3537599 chrX 3537665 3537685 7 90 5.0 5.5 5.2 1.1 103 chrX 3537582 intron CG32791 - chrX 3537634 intron CG32791 - chrX 3537685 intron CG32791 - chrX_7_3535001 chrX_3535001 RAL-409_95b 1301 chrX 3597539 3597578 chrX 3619716 3619745 roo 11 22175 4.0 1.0 2.5 3.1 22206 chrX 3597539 intron AstA-R1 + chrX 3608642 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-409_95b 1302 chrX 3713098 3713119 chrX 3713208 3713248 4 115 5.0 1.5 3.2 1.0 150 chrX 3713098 intron Rala - chrX 3713173 intron Rala - chrX 3713248 intron Rala - chrX_4_3710001 chrX_3710001 RAL-409_95b 1303 chrX 3866112 3866126 chrX 3866188 3866218 5 84 2.5 2.5 2.5 1.4 106 chrX 3866112 intron yin - chrX 3866165 intron yin - chrX 3866218 intron yin - chrX_5_3865001 chrX_3865001 RAL-409_95b 1304 chrX 3874749 3874773 chrX 3874827 3874838 4 78 4.0 3.0 3.5 0.9 89 chrX 3874749 intron CG2930 + chrX 3874794 intron CG2930 + chrX 3874838 intron CG2930 + chrX_4_3870001 chrX_3870001 RAL-409_95b 1305 chrX 4048502 4048524 chrX 4048591 4048601 7 88 3.5 2.0 2.8 1.8 99 chrX 4048502 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048601 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-409_95b 1306 chrX 4299527 4299532 chrX 4299987 4300018 4 476 0.5 2.0 1.2 1.8 491 chrX 4299527 intergenic not near genes chrX 4299772 intergenic CG12692 - chrX 4300018 intergenic CG12692 - chrX_4_4295001 chrX_4295001 RAL-409_95b 1307 chrX 4361441 4361467 chrX 4361523 4361549 7 80 2.0 1.5 1.8 2.5 108 chrX 4361441 intron norpA + chrX 4361495 intron norpA + chrX 4361549 intron norpA + chrX_7_4360001 chrX_4360001 RAL-409_95b 1308 chrX 4525750 4525751 chrX 4525847 4525863 4 100 4.5 0.5 2.5 1.1 113 chrX 4525750 intron CR32773 - chrX 4525806 intron CR32773 - chrX 4525863 intron CR32773 - chrX_4_4525001 chrX_4525001 RAL-409_95b 1309 chrX 4700406 4700416 chrX 4700737 4700769 jockey 4 348 1.5 2.5 2.0 1.3 363 chrX 4700406 3` UTR ctp + chrX 4700588 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-409_95b 1310 chrX 4731806 4731833 chrX 4736908 4736925 jockey 6 5094 3.5 3.5 3.5 1.3 5119 chrX 4731806 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736925 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-409_95b 1311 chrX 4763256 4763285 chrX 4763739 4763760 Stalker4 7 487 0.5 2.5 1.5 2.8 504 chrX 4763256 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763760 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-409_95b 1312 chrX 4827968 4828002 chrX 4835338 4835342 Stalker4 6 7362 2.0 1.0 1.5 2.4 7374 chrX 4827968 intergenic not near genes chrX 4831655 intergenic not near genes chrX 4835342 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-409_95b 1313 chrX 4871198 4871220 chrX 4871305 4871322 4 107 1.0 1.0 1.0 2.0 124 chrX 4871198 intron CG42594 + chrX 4871260 intron CG42594 + chrX 4871322 intron CG42594 + chrX_4_4870001 chrX_4870001 RAL-409_95b 1314 chrX 4946594 4946607 chrX 4946668 4946691 7 82 2.5 3.0 2.8 1.8 97 chrX 4946594 intron Ptp4E + chrX 4946642 intron Ptp4E + chrX 4946691 intron Ptp4E + chrX_7_4945001 chrX_4945001 RAL-409_95b 1315 chrX 4961824 4961873 chrX 4962045 4962094 5 218 1.5 2.0 1.8 1.8 270 chrX 4961824 intron CR44833 - chrX 4961959 intron CR44833 - chrX 4962094 intron CR44833 - chrX_5_4960001 chrX_4960001 RAL-409_95b 1316 chrX 4990025 4990074 chrX 4997255 4997287 roo 5 7217 2.0 0.5 1.2 2.3 7262 chrX 4990025 intron CR44833 - chrX 4993656 intron CR44833 - chrX 4997287 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-409_95b 1317 chrX 5041015 5041031 chrX 5041104 5041108 4 88 8.0 7.0 7.5 0.5 93 chrX 5041015 intron CR44833 - chrX 5041062 intron CR44833 - chrX 5041108 intron CR44833 - chrX_4_5040001 chrX_5040001 RAL-409_95b 1318 chrX 5096281 5096303 chrX 5103864 5103875 springer 4 7579 0.5 1.5 1.0 2.0 7594 chrX 5096281 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103875 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-409_95b 1319 chrX 5159713 5159739 chrX 5159828 5159836 5 111 2.5 1.5 2.0 1.7 123 chrX 5159713 intron,intron CG15465 +,rg + chrX 5159774 intron,intron CG15465 +,rg + chrX 5159836 intron,intron CG15465 +,rg + chrX_5_5155001 chrX_5155001 RAL-409_95b 1320 chrX 5277539 5277584 chrX 5277732 5277762 4 181 1.5 5.5 3.5 0.9 223 chrX 5277539 intergenic not near genes chrX 5277650 intergenic not near genes chrX 5277762 intergenic not near genes chrX_4_5275001 chrX_5275001 RAL-409_95b 1321 chrX 5350287 5350315 chrX 5350413 5350444 4 128 5.0 6.0 5.5 0.6 157 chrX 5350287 intron SK + chrX 5350366 intron SK + chrX 5350444 intron SK + chrX_4_5350001 chrX_5350001 RAL-409_95b 1322 chrX 5473585 5473613 chrX 5473679 5473703 4 89 1.0 2.0 1.5 1.6 118 chrX 5473585 intron SPR + chrX 5473644 intron SPR + chrX 5473703 intron SPR + chrX_4_5470001 chrX_5470001 RAL-409_95b 1323 chrX 5485270 5485274 chrX 5485348 5485353 6 84 5.0 3.0 4.0 1.2 83 chrX 5485270 intron SPR + chrX 5485312 intron SPR + chrX 5485353 intron SPR + chrX_6_5485001 chrX_5485001 RAL-409_95b 1324 chrX 5524837 5524869 chrX 5528711 5528733 412 6 3874 2.0 1.0 1.5 2.4 3896 chrX 5524837 intergenic snoRNA:Psi28S-3342 - chrX 5526785 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-409_95b 1325 chrX 5883813 5883835 chrX 5884054 5884071 pogo 5 247 5.0 5.0 5.0 0.8 258 chrX 5883813 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884071 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-409_95b 1326 chrX 5884153 5884182 chrX 5884414 5884443 pogo 6 259 2.5 5.0 3.8 1.2 290 chrX 5884153 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884443 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-409_95b 1327 chrX 6118689 6118730 chrX 6118784 6118810 7 94 2.5 3.5 3.0 1.8 121 chrX 6118689 intron Ca-alpha1T - chrX 6118750 intron Ca-alpha1T - chrX 6118810 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-409_95b 1328 chrX 6171588 6171600 chrX 6179026 6179038 Quasimodo 4 7441 4.5 3.5 4.0 0.8 7450 chrX 6171588 intron Ca-alpha1T - chrX 6175313 intron Ca-alpha1T - chrX 6179038 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-409_95b 1329 chrX 6320041 6320070 chrX 6320167 6320180 6 122 1.0 2.0 1.5 2.4 139 chrX 6320041 intron CG15894 + chrX 6320110 intron CG15894 + chrX 6320180 intron CG15894 + chrX_6_6320001 chrX_6320001 RAL-409_95b 1330 chrX 6335221 6335239 chrX 6337729 6337750 Tirant 5 2515 0.0 6.0 3.0 1.2 2529 chrX 6335221 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337750 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-409_95b 1331 chrX 6562819 6562843 chrX 6571298 6571339 Tirant 6 8482 3.5 1.0 2.2 1.9 8520 chrX 6562819 intron CG34417 + chrX 6567079 intron CG34417 + chrX 6571339 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-409_95b 1332 chrX 6897665 6897705 chrX 6897795 6897798 8 119 2.0 1.5 1.8 2.9 133 chrX 6897665 intergenic not near genes chrX 6897732 intergenic not near genes chrX 6897798 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-409_95b 1333 chrX 6907110 6907119 chrX 6907307 6907329 4 206 2.0 2.0 2.0 1.3 219 chrX 6907110 intergenic not near genes chrX 6907220 intergenic not near genes chrX 6907329 intergenic not near genes chrX_4_6905001 chrX_6905001 RAL-409_95b 1334 chrX 6989516 6989534 chrX 6989592 6989614 6 87 2.5 3.0 2.8 1.6 98 chrX 6989516 intron ogre - chrX 6989565 intron ogre - chrX 6989614 intron ogre - chrX_6_6985001 chrX_6985001 RAL-409_95b 1335 chrX 7023608 7023633 chrX 7031000 7031027 Tabor 8 7388 3.0 3.0 3.0 2.0 7419 chrX 7023608 intron CG12541 - chrX 7027318 intron CG12541 - chrX 7031027 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-409_95b 1336 chrX 7268360 7268402 chrX 7268458 7268500 8 97 3.5 1.5 2.5 2.3 140 chrX 7268360 intron CR44357 - chrX 7268430 intron CR44357 - chrX 7268500 intron CR44357 - chrX_8_7265001 chrX_7265001 RAL-409_95b 1337 chrX 7702895 7702938 chrX 7703339 7703340 jockey 8 439 4.0 2.5 3.2 1.9 445 chrX 7702895 intron CHES-1-like - chrX 7703118 intron CHES-1-like - chrX 7703340 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-409_95b 1338 chrX 7832426 7832445 chrX 7832528 7832551 4 103 3.5 0.5 2.0 1.3 125 chrX 7832426 intron CG1402 + chrX 7832488 intron CG1402 + chrX 7832551 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-409_95b 1339 chrX 8085566 8085596 chrX 8085663 8085687 6 95 3.0 2.5 2.8 1.6 121 chrX 8085566 intron,5` UTR CG2256 -,CR45535 + chrX 8085626 intron,5` UTR CG2256 -,CR45535 + chrX 8085687 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-409_95b 1340 chrX 8562650 8562674 chrX 8562732 8562771 7 90 1.0 2.0 1.5 2.8 121 chrX 8562650 intron Trf4-1 + chrX 8562710 intron Trf4-1 + chrX 8562771 intron Trf4-1 + chrX_7_8560001 chrX_8560001 RAL-409_95b 1341 chrX 8860774 8860794 chrX 8860859 8860884 6 88 0.0 3.5 1.8 2.1 110 chrX 8860774 intron CG12075 + chrX 8860829 intron CG12075 + chrX 8860884 intron CG12075 + chrX_6_8860001 chrX_8860001 RAL-409_95b 1342 chrX 8922320 8922351 chrX 8922759 8922761 jockey 5 432 2.0 0.5 1.2 2.3 441 chrX 8922320 intron rdgA + chrX 8922540 intron rdgA + chrX 8922761 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-409_95b 1343 chrX 9229891 9229923 chrX 9229987 9229999 7 87 5.5 4.5 5.0 1.2 108 chrX 9229891 intron CG12121 - chrX 9229945 intron CG12121 - chrX 9229999 intron CG12121 - chrX_7_9225001 chrX_9225001 RAL-409_95b 1344 chrX 9229928 9229939 chrX 9229986 9230037 4 79 2.5 3.5 3.0 1.0 109 chrX 9229928 intron CG12121 - chrX 9229982 intron CG12121 - chrX 9230037 intron CG12121 - chrX_4_9225001 chrX_9225001 RAL-409_95b 1345 chrX 9337929 9337969 chrX 9338034 9338057 4 97 2.5 2.5 2.5 1.1 128 chrX 9337929 intron CG34449 - chrX 9337993 intron CG34449 - chrX 9338057 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-409_95b 1346 chrX 9481748 9481761 chrX 9481815 9481844 4 82 2.0 1.5 1.8 1.4 96 chrX 9481748 intron mgl - chrX 9481796 intron mgl - chrX 9481844 intron mgl - chrX_4_9480001 chrX_9480001 RAL-409_95b 1347 chrX 9575803 9575817 chrX 9576120 9576157 mdg3 8 328 2.0 5.0 3.5 1.8 354 chrX 9575803 intron,exon CG32699 -,CG42395 - chrX 9575980 intron,intron CG32699 -,CG42395 - chrX 9576157 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-409_95b 1348 chrX 9784179 9784205 chrX 9784362 9784385 6 186 0.5 2.0 1.2 2.7 206 chrX 9784179 intron CG32698 + chrX 9784282 intron CG32698 + chrX 9784385 intron CG32698 + chrX_6_9780001 chrX_9780001 RAL-409_95b 1349 chrX 9791849 9791883 chrX 9791960 9791979 7 107 2.0 0.5 1.2 3.2 130 chrX 9791849 intron CG32698 + chrX 9791914 intron CG32698 + chrX 9791979 intron CG32698 + chrX_7_9790001 chrX_9790001 RAL-409_95b 1350 chrX 10285873 10285905 chrX 10286227 10286240 5 345 1.5 0.5 1.0 2.5 367 chrX 10285873 intron alpha-Man-I - chrX 10286056 intron alpha-Man-I - chrX 10286240 intron alpha-Man-I - chrX_5_10285001 chrX_10285001 RAL-409_95b 1351 chrX 10369093 10369123 chrX 10369279 10369304 4 180 4.0 3.0 3.5 0.9 211 chrX 10369093 intron CG17841 + chrX 10369198 intron CG17841 + chrX 10369304 intron CG17841 + chrX_4_10365001 chrX_10365001 RAL-409_95b 1352 chrX 10506491 10506528 chrX 10506588 10506628 4 101 2.0 3.5 2.8 1.1 137 chrX 10506491 intron spri - chrX 10506560 intron spri - chrX 10506628 intron spri - chrX_4_10505001 chrX_10505001 RAL-409_95b 1353 chrX 10550334 10550365 chrX 10550410 10550439 6 86 0.5 0.5 0.5 4.0 105 chrX 10550334 intron spri - chrX 10550386 intron spri - chrX 10550439 intron spri - chrX_6_10550001 chrX_10550001 RAL-409_95b 1354 chrX 10550855 10550875 chrX 10552317 10552341 hobo 6 1468 2.5 0.0 1.2 2.7 1486 chrX 10550855 intron spri - chrX 10551598 intron spri - chrX 10552341 intron spri - chrX_6_10550001 chrX_10550001 RAL-409_95b 1355 chrX 10584458 10584489 chrX 10584537 10584570 8 78 0.5 1.0 0.8 4.4 112 chrX 10584458 intron spri - chrX 10584514 intron spri - chrX 10584570 intron spri - chrX_8_10580001 chrX_10580001 RAL-409_95b 1356 chrX 10686045 10686074 chrX 10691202 10691229 roo 7 5152 0.5 4.5 2.5 2.0 5184 chrX 10686045 intron X11Lbeta + chrX 10688637 intron X11Lbeta + chrX 10691229 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-409_95b 1357 chrX 11034298 11034322 chrX 11034624 11034672 5 340 0.5 2.0 1.2 2.3 374 chrX 11034298 intron CG42339 - chrX 11034485 intron CG42339 - chrX 11034672 intron CG42339 - chrX_5_11030001 chrX_11030001 RAL-409_95b 1358 chrX 11109417 11109417 chrX 12946233 12946234 4 1836816 1.5 6.5 4.0 0.8 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-409_95b 1359 chrX 11169863 11169883 chrX 11169940 11169957 4 82 4.0 4.0 4.0 0.8 94 chrX 11169863 3` UTR CG1394 - chrX 11169910 3` UTR CG1394 - chrX 11169957 3` UTR CG1394 - chrX_4_11165001 chrX_11165001 RAL-409_95b 1360 chrX 11180105 11180121 chrX 11180300 11180319 5 200 0.5 1.5 1.0 2.5 214 chrX 11180105 intergenic not near genes chrX 11180212 intergenic not near genes chrX 11180319 intergenic not near genes chrX_5_11180001 chrX_11180001 RAL-409_95b 1361 chrX 11312068 11312085 chrX 11319410 11319433 Stalker2 4 7344 2.5 1.5 2.0 1.3 7365 chrX 11312068 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319433 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-409_95b 1362 chrX 11602204 11602241 chrX 11602301 11602338 8 92 1.5 3.5 2.5 2.3 134 chrX 11602204 intron rho-4 + chrX 11602271 intron rho-4 + chrX 11602338 intron rho-4 + chrX_8_11600001 chrX_11600001 RAL-409_95b 1363 chrX 11633396 11633449 chrX 11640470 11640508 297 6 7064 2.5 3.5 3.0 1.5 7112 chrX 11633396 intron Ptp10D + chrX 11636952 intron Ptp10D + chrX 11640508 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-409_95b 1364 chrX 11719872 11719892 chrX 11719950 11719970 4 85 1.0 2.0 1.5 1.6 98 chrX 11719872 3` UTR prtp + chrX 11719921 intergenic prtp +,Tango10 + chrX 11719970 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-409_95b 1365 chrX 11917355 11917378 chrX 11917470 11917489 10 117 3.0 2.5 2.8 2.6 134 chrX 11917355 intergenic pot -,CR32661 - chrX 11917422 intergenic pot -,CR32661 - chrX 11917489 intergenic pot -,CR32661 - chrX_10_11915001 chrX_11915001 RAL-409_95b 1366 chrX 11922349 11922378 chrX 11922499 11922530 6 148 2.0 6.0 4.0 1.2 181 chrX 11922349 exon Sclp - chrX 11922440 intron Sclp - chrX 11922530 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-409_95b 1367 chrX 11936579 11936584 chrX 11936680 11936686 5 101 0.0 4.0 2.0 1.7 107 chrX 11936579 intron cac - chrX 11936632 intron cac - chrX 11936686 intron cac - chrX_5_11935001 chrX_11935001 RAL-409_95b 1368 chrX 11999027 11999076 chrX 11999126 11999159 5 85 0.0 0.5 0.2 4.2 132 chrX 11999027 intron fw - chrX 11999093 intron fw - chrX 11999159 intron fw - chrX_5_11995001 chrX_11995001 RAL-409_95b 1369 chrX 12150547 12150579 chrX 12150633 12150663 5 87 0.5 1.5 1.0 2.5 116 chrX 12150547 intron Ten-a + chrX 12150605 intron Ten-a + chrX 12150663 intron Ten-a + chrX_5_12150001 chrX_12150001 RAL-409_95b 1370 chrX 12176725 12176762 chrX 12176820 12176834 5 87 3.0 4.0 3.5 1.1 109 chrX 12176725 intron,3` UTR Ten-a +,CG1924 - chrX 12176780 intron,3` UTR Ten-a +,CG1924 - chrX 12176834 intron,3` UTR Ten-a +,CG1924 - chrX_5_12175001 chrX_12175001 RAL-409_95b 1371 chrX 12301954 12301986 chrX 12303265 12303293 X-element 8 1311 1.5 1.0 1.2 3.6 1339 chrX 12301954 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303293 intron Ten-a + chrX_8_12300001 chrX_12300001 RAL-409_95b 1372 chrX 12350774 12350792 chrX 12350854 12350872 4 84 7.0 0.0 3.5 0.9 98 chrX 12350774 intergenic not near genes chrX 12350823 intergenic not near genes chrX 12350872 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-409_95b 1373 chrX 12823198 12823219 chrX 12823281 12823316 4 80 1.5 1.5 1.5 1.6 118 chrX 12823198 intron Pde9 - chrX 12823257 intron Pde9 - chrX 12823316 intron Pde9 - chrX_4_12820001 chrX_12820001 RAL-409_95b 1374 chrX 12960756 12960798 chrX 12960857 12960898 5 92 1.5 0.5 1.0 2.5 142 chrX 12960756 3` UTR CG32642 + chrX 12960827 intergenic CG32642 + chrX 12960898 intergenic CG32642 + chrX_5_12960001 chrX_12960001 RAL-409_95b 1375 chrX 13374818 13374869 chrX 13374918 13374969 8 94 0.5 1.0 0.8 4.4 151 chrX 13374818 intron CG1640 + chrX 13374894 intron CG1640 + chrX 13374969 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-409_95b 1376 chrX 13442144 13442161 chrX 13442237 13442245 5 91 0.0 2.0 1.0 2.5 101 chrX 13442144 intergenic not near genes chrX 13442194 intergenic not near genes chrX 13442245 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-409_95b 1377 chrX 13463643 13463677 chrX 13469224 13469265 mdg3 4 5586 2.5 2.0 2.2 1.2 5622 chrX 13463643 intron Neto + chrX 13466454 intron Neto + chrX 13469265 intron Neto + chrX_4_13465001 chrX_13465001 RAL-409_95b 1378 chrX 13628453 13628468 chrX 13628537 13628572 4 94 1.5 0.5 1.0 2.0 119 chrX 13628453 intron NFAT + chrX 13628512 intron NFAT + chrX 13628572 intron NFAT + chrX_4_13625001 chrX_13625001 RAL-409_95b 1379 chrX 13754424 13754463 chrX 13754521 13754548 8 98 3.0 1.5 2.2 2.5 124 chrX 13754424 intron Pdcd4 - chrX 13754486 intron Pdcd4 - chrX 13754548 intron Pdcd4 - chrX_8_13750001 chrX_13750001 RAL-409_95b 1380 chrX 13815920 13815936 chrX 13816095 13816125 7 187 5.0 2.5 3.8 1.5 205 chrX 13815920 intron Clic - chrX 13816022 intron Clic - chrX 13816125 intron Clic - chrX_7_13815001 chrX_13815001 RAL-409_95b 1381 chrX 13937978 13938010 chrX 13941251 13941297 I-element 5 3276 0.5 1.5 1.0 2.5 3319 chrX 13937978 intron mamo - chrX 13939638 intron mamo - chrX 13941297 intron mamo - chrX_5_13935001 chrX_13935001 RAL-409_95b 1382 chrX 13975889 13975907 chrX 13975952 13976004 4 80 0.0 2.5 1.2 1.8 115 chrX 13975889 intron mamo - chrX 13975946 intron mamo - chrX 13976004 intron mamo - chrX_4_13975001 chrX_13975001 RAL-409_95b 1383 chrX 14105007 14105052 chrX 14114178 14114195 roo 6 9162 3.0 4.5 3.8 1.2 9188 chrX 14105007 intergenic not near genes chrX 14109601 intergenic not near genes chrX 14114195 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-409_95b 1384 chrX 14176048 14176095 chrX 14176148 14176195 4 98 1.0 1.0 1.0 2.0 147 chrX 14176048 intergenic CG1368 + chrX 14176122 intergenic CG1368 + chrX 14176195 intergenic not near genes chrX_4_14175001 chrX_14175001 RAL-409_95b 1385 chrX 14333807 14333838 chrX 14333925 14333942 5 109 1.5 0.5 1.0 2.5 135 chrX 14333807 intron dpr8 + chrX 14333874 intron dpr8 + chrX 14333942 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-409_95b 1386 chrX 14340277 14340303 chrX 14340375 14340400 4 99 2.0 0.5 1.2 1.8 123 chrX 14340277 intron dpr8 + chrX 14340338 intron dpr8 + chrX 14340400 intron dpr8 + chrX_4_14340001 chrX_14340001 RAL-409_95b 1387 chrX 14484950 14484983 chrX 14485059 14485092 7 99 0.5 2.0 1.2 3.2 142 chrX 14484950 intergenic not near genes chrX 14485021 intergenic not near genes chrX 14485092 intergenic not near genes chrX_7_14485001 chrX_14485001 RAL-409_95b 1388 chrX 14500504 14500526 chrX 14500605 14500615 4 105 1.5 0.0 0.8 2.2 111 chrX 14500504 intergenic not near genes chrX 14500560 intergenic not near genes chrX 14500615 intergenic not near genes chrX_4_14500001 chrX_14500001 RAL-409_95b 1389 chrX 14528690 14528716 chrX 14528781 14528815 4 100 2.5 2.0 2.2 1.2 125 chrX 14528690 intergenic not near genes chrX 14528752 intergenic not near genes chrX 14528815 intergenic not near genes chrX_4_14525001 chrX_14525001 RAL-409_95b 1390 chrX 14671249 14671276 chrX 14671333 14671365 7 89 1.0 2.0 1.5 2.8 116 chrX 14671249 intergenic not near genes chrX 14671307 intergenic not near genes chrX 14671365 intergenic not near genes chrX_7_14670001 chrX_14670001 RAL-409_95b 1391 chrX 14778031 14778055 chrX 14782825 14782833 Doc 4 4792 2.5 2.5 2.5 1.1 4802 chrX 14778031 intergenic CG5347 + chrX 14780432 intergenic not near genes chrX 14782833 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-409_95b 1392 chrX 14799682 14799724 chrX 14799798 14799819 4 104 2.5 4.0 3.2 1.0 137 chrX 14799682 intron rut - chrX 14799750 intron rut - chrX 14799819 intron rut - chrX_4_14795001 chrX_14795001 RAL-409_95b 1393 chrX 14861929 14861972 chrX 14862144 14862168 4 207 14.0 14.5 14.2 0.3 239 chrX 14861929 intron Flo2 + chrX 14862048 intron Flo2 + chrX 14862168 intron Flo2 + chrX_4_14860001 chrX_14860001 RAL-409_95b 1394 chrX 15413046 15413075 chrX 15417350 15417393 Juan 4 4300 2.5 3.5 3.0 1.0 4347 chrX 15413046 intron Cngl - chrX 15415220 intron Cngl - chrX 15417393 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-409_95b 1395 chrX 15435697 15435702 chrX 15436111 15436126 rover 9 436 0.0 4.5 2.2 2.8 429 chrX 15435697 intron Cngl - chrX 15435912 intron Cngl - chrX 15436126 intron Cngl - chrX_9_15435001 chrX_15435001 RAL-409_95b 1396 chrX 15565672 15565695 chrX 15565830 15565839 4 154 0.0 3.0 1.5 1.6 167 chrX 15565672 intergenic not near genes chrX 15565756 intergenic not near genes chrX 15565839 intergenic not near genes chrX_4_15565001 chrX_15565001 RAL-409_95b 1397 chrX 15678049 15678068 chrX 15678131 15678164 5 83 3.0 5.5 4.2 1.0 115 chrX 15678049 intergenic CG12708 + chrX 15678106 intergenic CG12708 + chrX 15678164 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-409_95b 1398 chrX 15959535 15959566 chrX 15959625 15959650 4 93 2.5 1.0 1.8 1.4 115 chrX 15959535 intron mmd - chrX 15959592 intron mmd - chrX 15959650 intron mmd - chrX_4_15955001 chrX_15955001 RAL-409_95b 1399 chrX 16492627 16492661 chrX 16498224 16498232 mdg3 6 5583 2.5 2.0 2.2 1.9 5605 chrX 16492627 intron para - chrX 16495430 intron para - chrX 16498232 intron para - chrX_6_16495001 chrX_16495001 RAL-409_95b 1400 chrX 16650929 16650945 chrX 16651006 16651027 4 83 2.5 0.0 1.2 1.8 98 chrX 16650929 intergenic CG32573 +,CG42512 + chrX 16650978 intergenic CG32573 +,CG42512 + chrX 16651027 intergenic CG32573 +,CG42512 + chrX_4_16650001 chrX_16650001 RAL-409_95b 1401 chrX 16674760 16674783 chrX 16674880 16674893 4 120 2.5 5.0 3.8 0.8 133 chrX 16674760 intron CG13012 - chrX 16674826 intron CG13012 - chrX 16674893 intron CG13012 - chrX_4_16670001 chrX_16670001 RAL-409_95b 1402 chrX 16689622 16689653 chrX 16689707 16689711 8 75 2.0 0.5 1.2 3.6 89 chrX 16689622 intron Sep4 - chrX 16689666 intron Sep4 - chrX 16689711 intron Sep4 - chrX_8_16685001 chrX_16685001 RAL-409_95b 1403 chrX 17011964 17011984 chrX 17012062 17012065 5 93 1.0 6.5 3.8 1.0 101 chrX 17011964 intron CG45002 - chrX 17012014 intron CG45002 - chrX 17012065 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-409_95b 1404 chrX 17037975 17037994 chrX 17038078 17038108 4 108 1.0 1.5 1.2 1.8 133 chrX 17037975 intron CG45002 - chrX 17038042 intron CG45002 - chrX 17038108 intron CG45002 - chrX_4_17035001 chrX_17035001 RAL-409_95b 1405 chrX 17316354 17316398 chrX 17316458 17316479 4 91 0.5 0.0 0.2 3.3 125 chrX 17316354 intron B-H2 + chrX 17316416 intron B-H2 + chrX 17316479 intron B-H2 + chrX_4_17315001 chrX_17315001 RAL-409_95b 1406 chrX 17352600 17352622 chrX 17352717 17352743 5 116 0.0 1.5 0.8 2.8 143 chrX 17352600 intergenic not near genes chrX 17352672 intergenic not near genes chrX 17352743 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-409_95b 1407 chrX 17476475 17476481 chrX 17476534 17476578 6 74 2.0 1.0 1.5 2.4 103 chrX 17476475 intron CG43658 - chrX 17476526 intron CG43658 - chrX 17476578 intron CG43658 - chrX_6_17475001 chrX_17475001 RAL-409_95b 1408 chrX 17500348 17500396 chrX 17500633 17500652 6 274 3.0 3.5 3.2 1.4 304 chrX 17500348 intron CG43658 - chrX 17500500 intron CG43658 - chrX 17500652 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-409_95b 1409 chrX 17725253 17725281 chrX 17725342 17725365 8 92 4.5 2.0 3.2 1.9 112 chrX 17725253 intron CG42684 + chrX 17725309 intron CG42684 + chrX 17725365 intron CG42684 + chrX_8_17725001 chrX_17725001 RAL-409_95b 1410 chrX 17743811 17743827 chrX 17743946 17743971 4 145 2.5 1.5 2.0 1.3 160 chrX 17743811 intron CG42684 + chrX 17743891 intron CG42684 + chrX 17743971 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-409_95b 1411 chrX 17953921 17953930 chrX 17954025 17954025 4 106 5.5 5.0 5.2 0.6 104 chrX 17953921 intron Sh - chrX 17953973 intron Sh - chrX 17954025 intron Sh - chrX_4_17950001 chrX_17950001 RAL-409_95b 1412 chrX 17953936 17953956 chrX 17954023 17954070 5 105 3.0 4.0 3.5 1.1 134 chrX 17953936 intron Sh - chrX 17954003 intron Sh - chrX 17954070 intron Sh - chrX_5_17950001 chrX_17950001 RAL-409_95b 1413 chrX 18122825 18122849 chrX 18122897 18122923 7 80 3.5 3.5 3.5 1.6 98 chrX 18122825 5` UTR CR45606 + chrX 18122874 5` UTR CR45606 + chrX 18122923 intergenic CR45606 + chrX_7_18120001 chrX_18120001 RAL-409_95b 1414 chrX 18194064 18194099 chrX 18194599 18194642 BS 7 543 0.5 1.5 1.0 3.5 578 chrX 18194064 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194642 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-409_95b 1415 chrX 18218737 18218758 chrX 18218852 18218872 5 110 3.0 0.5 1.8 1.8 135 chrX 18218737 intron CG33639 - chrX 18218804 intron CG33639 - chrX 18218872 intron CG33639 - chrX_5_18215001 chrX_18215001 RAL-409_95b 1416 chrX 18218759 18218780 chrX 18218849 18218895 8 95 1.5 0.5 1.0 4.0 136 chrX 18218759 intron CG33639 - chrX 18218827 intron CG33639 - chrX 18218895 intron CG33639 - chrX_8_18215001 chrX_18215001 RAL-409_95b 1417 chrX 18250408 18250445 chrX 18250529 18250569 6 116 2.5 1.0 1.8 2.1 161 chrX 18250408 intergenic not near genes chrX 18250488 intergenic not near genes chrX 18250569 intergenic not near genes chrX_6_18250001 chrX_18250001 RAL-409_95b 1418 chrX 18558758 18558800 chrX 18558860 18558876 4 90 0.0 1.0 0.5 2.7 118 chrX 18558758 intron Bx + chrX 18558817 intron Bx + chrX 18558876 intron Bx + chrX_4_18555001 chrX_18555001 RAL-409_95b 1419 chrX 12946233 12946235 chrX 18572525 18572527 4 5626292 6.5 5.5 6.0 0.6 5626294 chrX 12946233 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-409_95b 1420 chrX 18644996 18645049 chrX 18645114 18645151 6 110 3.5 3.0 3.2 1.4 155 chrX 18644996 intron Rip11 - chrX 18645074 intron Rip11 - chrX 18645151 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-409_95b 1421 chrX 18888670 18888685 chrX 18888756 18888773 4 96 1.0 7.0 4.0 0.8 103 chrX 18888670 3` UTR CG7332 + chrX 18888722 3` UTR CG7332 + chrX 18888773 3` UTR CG7332 + chrX_4_18885001 chrX_18885001 RAL-409_95b 1422 chrX 18896528 18896549 chrX 18896635 18896636 5 106 0.0 3.0 1.5 2.0 108 chrX 18896528 3` UTR CG7349 + chrX 18896582 intergenic CG7349 + chrX 18896636 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-409_95b 1423 chrX 18947502 18947532 chrX 18947594 18947618 7 101 2.5 5.5 4.0 1.4 116 chrX 18947502 intron CG43759 + chrX 18947560 intron CG43759 + chrX 18947618 intron CG43759 + chrX_7_18945001 chrX_18945001 RAL-409_95b 1424 chrX 18995712 18995719 chrX 18995782 18995788 4 72 1.0 2.0 1.5 1.6 76 chrX 18995712 intron CG43759 + chrX 18995750 intron CG43759 + chrX 18995788 intron CG43759 + chrX_4_18995001 chrX_18995001 RAL-409_95b 1425 chrX 19014360 19014394 chrX 19014439 19014483 6 84 1.5 4.5 3.0 1.5 123 chrX 19014360 intron CG43759 + chrX 19014422 intron CG43759 + chrX 19014483 intron CG43759 + chrX_6_19010001 chrX_19010001 RAL-409_95b 1426 chrX 19080338 19080357 chrX 19080440 19080463 4 108 0.5 3.0 1.8 1.4 125 chrX 19080338 intergenic not near genes chrX 19080400 intergenic not near genes chrX 19080463 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-409_95b 1427 chrX 19124440 19124458 chrX 19124522 19124547 6 84 1.0 0.5 0.8 3.3 107 chrX 19124440 intergenic CG15882 - chrX 19124494 intergenic CG15882 - chrX 19124547 intergenic CG15882 -,tgy - chrX_6_19120001 chrX_19120001 RAL-409_95b 1428 chrX 19125693 19125718 chrX 19125822 19125859 9 137 5.0 3.5 4.2 1.7 166 chrX 19125693 intron tgy - chrX 19125776 intron tgy - chrX 19125859 intron tgy - chrX_9_19125001 chrX_19125001 RAL-409_95b 1429 chrX 19136562 19136584 chrX 19143479 19143501 412 4 6919 0.0 1.5 0.8 2.2 6939 chrX 19136562 intergenic not near genes chrX 19140032 intergenic not near genes chrX 19143501 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-409_95b 1430 chrX 19187501 19187542 chrX 19187599 19187642 8 87 1.0 1.0 1.0 4.0 141 chrX 19187501 intergenic CG33253 + chrX 19187572 intergenic CG33253 +,Mec2 + chrX 19187642 intergenic CG33253 +,Mec2 + chrX_8_19185001 chrX_19185001 RAL-409_95b 1431 chrX 19380148 19380181 chrX 19380396 19380420 pogo 5 245 1.0 1.5 1.2 2.3 272 chrX 19380148 intron kek5 + chrX 19380284 intron kek5 + chrX 19380420 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-409_95b 1432 chrX 19461134 19461172 chrX 19461239 19461271 8 100 1.0 2.5 1.8 2.9 137 chrX 19461134 intron kek5 + chrX 19461202 intron kek5 + chrX 19461271 intron kek5 + chrX_8_19460001 chrX_19460001 RAL-409_95b 1433 chrX 19472120 19472160 chrX 19472694 19472703 jockey 5 555 2.0 4.5 3.2 1.2 583 chrX 19472120 intergenic kek5 + chrX 19472412 intergenic kek5 + chrX 19472703 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-409_95b 1434 chrX 19881464 19881482 chrX 19881541 19881583 4 94 0.5 2.0 1.2 1.8 119 chrX 19881464 intron Hers + chrX 19881524 intron Hers + chrX 19881583 intron Hers + chrX_4_19880001 chrX_19880001 RAL-409_95b 1435 chrX 19883764 19883797 chrX 19883853 19883880 10 88 2.5 2.0 2.2 3.1 116 chrX 19883764 intron Hers + chrX 19883822 intron Hers + chrX 19883880 intron Hers + chrX_10_19880001 chrX_19880001 RAL-409_95b 1436 chrX 19897387 19897412 chrX 19897460 19897490 4 78 2.0 1.0 1.5 1.6 103 chrX 19897387 intron Hers + chrX 19897438 intron Hers + chrX 19897490 intron Hers + chrX_4_19895001 chrX_19895001 RAL-409_95b 1437 chrX 19978158 19978172 chrX 19978252 19978255 4 90 2.0 3.0 2.5 1.1 97 chrX 19978158 intergenic not near genes chrX 19978206 intergenic not near genes chrX 19978255 intergenic not near genes chrX_4_19975001 chrX_19975001 RAL-409_95b 1438 chrX 20312868 20312910 chrX 20312966 20312972 5 84 1.0 3.5 2.2 1.6 104 chrX 20312868 intron CG1504 - chrX 20312920 intron CG1504 - chrX 20312972 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-409_95b 1439 chrX 20426178 20426199 chrX 20428390 20428401 5 2208 21.5 20.5 21.0 0.2 2223 chrX 20426178 exon cactin + chrX 20427290 intergenic CG11710 -,CG15456 - chrX 20428401 exon CG11710 - chrX_5_20425001 chrX_20425001 RAL-409_95b 1440 chrX 20443179 20443193 chrX 20443251 20443256 4 71 1.0 0.0 0.5 2.7 77 chrX 20443179 intron CG1695 + chrX 20443218 intron CG1695 + chrX 20443256 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-409_95b 1441 chrX 20784027 20784036 chrX 20784127 20784160 5 123 1.0 4.0 2.5 1.4 133 chrX 20784027 intron shakB - chrX 20784094 intron shakB - chrX 20784160 intron shakB - chrX_5_20780001 chrX_20780001 RAL-409_95b 1442 chrX 20836738 20836753 chrX 20844337 20844374 roo 4 7604 0.5 2.0 1.2 1.8 7636 chrX 20836738 intron shakB - chrX 20840556 intron shakB - chrX 20844374 intron shakB - chrX_4_20840001 chrX_20840001 RAL-409_95b 1443 chrX 20940715 20940754 chrX 20942189 20942229 hobo 7 1478 2.5 1.5 2.0 2.3 1514 chrX 20940715 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942229 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-409_95b 1444 chrX 20956993 20957003 chrX 20962434 20962465 I-element 4 5452 0.5 1.5 1.0 2.0 5472 chrX 20956993 intergenic not near genes chrX 20959729 intergenic not near genes chrX 20962465 intergenic Ser6 - chrX_4_20955001 chrX_20955001 RAL-409_95b 1445 chrX 20981017 20981060 chrX 20981134 20981149 7 114 1.0 2.5 1.8 2.5 132 chrX 20981017 intergenic not near genes chrX 20981083 intergenic not near genes chrX 20981149 intergenic not near genes chrX_7_20980001 chrX_20980001 RAL-409_95b 1446 chrX 21013813 21013863 chrX 21014216 21014248 6 394 2.0 2.0 2.0 2.0 435 chrX 21013813 intergenic not near genes chrX 21014030 intergenic not near genes chrX 21014248 intergenic not near genes chrX_6_21010001 chrX_21010001 RAL-409_95b 1447 chrX 21061867 21061893 chrX 21062352 21062393 roo 4 492 1.0 0.5 0.8 2.2 526 chrX 21061867 intron bves + chrX 21062130 intron bves + chrX 21062393 intron,3` UTR bves +,CG32512 - chrX_4_21060001 chrX_21060001 RAL-409_95b 1448 chrX 21077581 21077613 chrX 21077684 21077704 5 91 3.5 2.0 2.8 1.3 123 chrX 21077581 intron bves + chrX 21077642 intron bves + chrX 21077704 intron bves + chrX_5_21075001 chrX_21075001 RAL-409_95b 1449 chrX 21086135 21086158 chrX 21087159 21087207 jockey 4 1033 1.5 1.0 1.2 1.8 1072 chrX 21086135 intergenic not near genes chrX 21086671 intergenic not near genes chrX 21087207 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-409_95b 1450 chrX 21458699 21458725 chrX 21464138 21464181 Ivk 5 5448 0.0 2.5 1.2 2.3 5482 chrX 21458699 intergenic not near genes chrX 21461440 intergenic not near genes chrX 21464181 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-409_95b 1451 chrX 21516985 21517017 chrX 21517077 21517116 7 89 4.5 7.0 5.8 1.0 131 chrX 21516985 intron CR45082 - chrX 21517050 intron CR45082 - chrX 21517116 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-409_95b 1452 chrX 21565412 21565440 chrX 21565510 21565523 4 87 2.5 1.5 2.0 1.3 111 chrX 21565412 intergenic not near genes chrX 21565468 intergenic not near genes chrX 21565523 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-409_95b 1453 chrX 21581552 21581573 chrX 21581653 21581657 4 93 0.5 0.5 0.5 2.7 105 chrX 21581552 intergenic not near genes chrX 21581604 intergenic not near genes chrX 21581657 intergenic not near genes chrX_4_21580001 chrX_21580001 RAL-409_95b 1454 chrX 21603867 21603889 chrX 21603960 21603979 6 93 1.0 2.5 1.8 2.1 112 chrX 21603867 intron CG14476 - chrX 21603923 intron CG14476 - chrX 21603979 intron CG14476 - chrX_6_21600001 chrX_21600001 RAL-409_95b 1455 chrX 21668252 21668286 chrX 21668342 21668374 10 93 3.0 1.0 2.0 3.3 122 chrX 21668252 intergenic not near genes chrX 21668313 intergenic not near genes chrX 21668374 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-409_95b 1456 chrX 22564556 22564581 chrX 22575123 22575150 jockey 6 10563 7.5 5.0 6.2 0.8 10594 chrX 22564556 intergenic not near genes chrX 22569853 intergenic not near genes chrX 22575150 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-409_95b 1457 chrX 22660573 22660595 chrX 22660661 22660666 5 82 2.0 0.0 1.0 2.5 93 chrX 22660573 intron CR44997 + chrX 22660620 intron CR44997 + chrX 22660666 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-409_95b 1458 chrX 22697518 22697523 chrX 22701805 22701820 Juan 6 4297 3.5 5.0 4.2 1.2 4302 chrX 22697518 intron CR44997 + chrX 22699669 intron CR44997 + chrX 22701820 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-409_95b 1459 chrX 22771503 22771537 chrX 22774812 22774831 297 4 3304 2.5 3.0 2.8 1.1 3328 chrX 22771503 intron CR44997 + chrX 22773167 intron CR44997 + chrX 22774831 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-409_95b 1460 chrX 22784081 22784098 chrX 22784161 22784185 6 94 1.5 1.0 1.2 2.7 104 chrX 22784081 intron CR44997 + chrX 22784133 intron CR44997 + chrX 22784185 intron CR44997 + chrX_6_22780001 chrX_22780001 RAL-409_95b 1461 chrX 22967390 22967510 chrX 23154544 23154688 diver 5 187167 2.5 6.5 4.5 0.9 187298 chrX 22967390 intergenic not near genes chrX 23061039 intergenic not near genes chrX 23154688 intergenic not near genes chrX_5_23060001 chrX_23060001 RAL-409_95b 1462 chrX 22996309 22996339 chrX 23003540 23003576 roo 8 7241 1.5 1.5 1.5 3.2 7267 chrX 22996309 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003576 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-409_95b