SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46330 46380 chr2L 46428 46463 17 95 9.0 9.5 9.2 1.7 133 chr2L 46330 intron Cda5 - chr2L 46396 intron Cda5 - chr2L 46463 intron Cda5 - chr2L_17_45001 chr2L_45001 RAL-405 2 chr2L 47460 47473 chr2L 52572 52592 jockey 6 5120 4.0 9.5 6.8 0.8 5132 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-405 3 chr2L 65417 65448 chr2L 65519 65545 6 100 8.5 6.5 7.5 0.7 128 chr2L 65417 intergenic Cda5 - chr2L 65481 intergenic Cda5 - chr2L 65545 intergenic Cda5 -,CR45339 + chr2L_6_65001 chr2L_65001 RAL-405 4 chr2L 91183 91197 chr2L 91259 91259 5 78 15.0 13.0 14.0 0.3 76 chr2L 91183 intergenic not near genes chr2L 91221 intergenic not near genes chr2L 91259 intergenic not near genes chr2L_5_90001 chr2L_90001 RAL-405 5 chr2L 119724 119753 chr2L 119821 119844 5 92 19.5 13.5 16.5 0.3 120 chr2L 119724 intron,intron CG11455 +,CG4822 - chr2L 119784 intron,intron CG11455 +,CG4822 - chr2L 119844 intron,exon CG11455 +,CG4822 - chr2L_5_115001 chr2L_115001 RAL-405 6 chr2L 163827 163872 chr2L 163935 163970 9 100 19.0 15.5 17.2 0.5 143 chr2L 163827 intron spen + chr2L 163898 intron spen + chr2L 163970 intron spen + chr2L_9_160001 chr2L_160001 RAL-405 7 chr2L 172039 172086 chr2L 172140 172162 12 92 3.5 3.0 3.2 2.9 123 chr2L 172039 intron spen + chr2L 172100 intron spen + chr2L 172162 intron spen + chr2L_12_170001 chr2L_170001 RAL-405 8 chr2L 179440 179491 chr2L 179543 179577 9 92 2.0 2.0 2.0 3.0 137 chr2L 179440 intron spen + chr2L 179508 intron spen + chr2L 179577 intron spen + chr2L_9_175001 chr2L_175001 RAL-405 9 chr2L 263284 263313 chr2L 263450 263474 7 162 2.5 7.5 5.0 1.2 190 chr2L 263284 intron,3` UTR CG3645 -,CG17075 - chr2L 263379 intron,3` UTR CG3645 -,CG17075 - chr2L 263474 intron,3` UTR CG3645 -,CG17075 - chr2L_7_260001 chr2L_260001 RAL-405 10 chr2L 297674 297713 chr2L 297794 297817 4 114 9.0 8.5 8.8 0.4 143 chr2L 297674 intergenic Pi3K21B +,Hop + chr2L 297746 intergenic Pi3K21B +,Hop + chr2L 297817 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-405 11 chr2L 314115 314140 chr2L 314212 314237 7 93 3.5 3.0 3.2 1.7 122 chr2L 314115 intron Plc21C + chr2L 314176 intron Plc21C + chr2L 314237 intron Plc21C + chr2L_7_310001 chr2L_310001 RAL-405 12 chr2L 314144 314153 chr2L 314206 314250 5 89 3.0 3.0 3.0 1.2 106 chr2L 314144 intron Plc21C + chr2L 314197 intron Plc21C + chr2L 314250 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-405 13 chr2L 323436 323473 chr2L 323534 323560 9 90 11.5 8.0 9.8 0.8 124 chr2L 323436 intron Plc21C + chr2L 323498 intron Plc21C + chr2L 323560 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-405 14 chr2L 325131 325148 chr2L 325218 325245 5 93 3.5 4.5 4.0 1.0 114 chr2L 325131 intron Plc21C + chr2L 325188 intron Plc21C + chr2L 325245 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-405 15 chr2L 335034 335066 chr2L 335110 335147 7 87 13.5 10.5 12.0 0.5 113 chr2L 335034 intron Plc21C + chr2L 335090 intron Plc21C + chr2L 335147 intron Plc21C + chr2L_7_335001 chr2L_335001 RAL-405 16 chr2L 347871 347918 chr2L 355391 355401 blood 19 7515 4.5 6.5 5.5 2.9 7530 chr2L 347871 3` UTR Plc21C + chr2L 351636 intron Plc21C + chr2L 355401 3` UTR Plc21C + chr2L_19_350001 chr2L_350001 RAL-405 17 chr2L 371423 371457 chr2L 371521 371556 9 98 4.5 11.0 7.8 1.0 133 chr2L 371423 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371556 intergenic not near genes chr2L_9_370001 chr2L_370001 RAL-405 18 chr2L 407928 407973 chr2L 408029 408073 12 100 12.5 15.5 14.0 0.8 145 chr2L 407928 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408073 3` UTR AP-2alpha - chr2L_12_405001 chr2L_405001 RAL-405 19 chr2L 467363 467493 chr2L 467461 467586 5 103 14.5 17.5 16.0 0.3 223 chr2L 467363 intron CG4297 - chr2L 467474 intron CG4297 - chr2L 467586 intron CG4297 - chr2L_5_465001 chr2L_465001 RAL-405 20 chr2L 504300 504354 chr2L 504396 504425 7 90 5.5 6.0 5.8 1.0 125 chr2L 504300 intron ush + chr2L 504362 intron ush + chr2L 504425 intron ush + chr2L_7_500001 chr2L_500001 RAL-405 21 chr2L 597169 597176 chr2L 597299 597314 4 132 16.0 11.0 13.5 0.3 145 chr2L 597169 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597314 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-405 22 chr2L 686919 686947 chr2L 695979 696007 roo 4 9060 1.5 5.0 3.2 1.0 9088 chr2L 686919 intron ds - chr2L 691463 intron ds - chr2L 696007 intron ds - chr2L_4_690001 chr2L_690001 RAL-405 23 chr2L 764547 764568 chr2L 764648 764669 4 98 15.0 3.0 9.0 0.4 122 chr2L 764547 intergenic not near genes chr2L 764608 intergenic not near genes chr2L 764669 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-405 24 chr2L 791443 791452 chr2L 791557 791566 4 114 14.5 14.5 14.5 0.3 123 chr2L 791443 intergenic not near genes chr2L 791504 intergenic not near genes chr2L 791566 intergenic not near genes chr2L_4_790001 chr2L_790001 RAL-405 25 chr2L 791456 791479 chr2L 791545 791563 7 104 10.5 13.5 12.0 0.5 107 chr2L 791456 intergenic not near genes chr2L 791510 intergenic not near genes chr2L 791563 intergenic not near genes chr2L_7_790001 chr2L_790001 RAL-405 26 chr2L 849451 849487 chr2L 849562 849598 11 107 4.0 5.5 4.8 1.9 147 chr2L 849451 intron drongo - chr2L 849524 intron drongo - chr2L 849598 intron drongo - chr2L_11_845001 chr2L_845001 RAL-405 27 chr2L 931624 931652 chr2L 931723 931740 6 97 1.5 3.5 2.5 1.7 116 chr2L 931624 intron CG4341 + chr2L 931682 intron CG4341 + chr2L 931740 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-405 28 chr2L 931659 931669 chr2L 931714 931767 8 91 0.5 3.0 1.8 2.9 108 chr2L 931659 intron CG4341 + chr2L 931713 intron CG4341 + chr2L 931767 intron CG4341 + chr2L_8_930001 chr2L_930001 RAL-405 29 chr2L 964544 964570 chr2L 964643 964674 5 102 15.0 19.0 17.0 0.3 130 chr2L 964544 intergenic not near genes chr2L 964609 intergenic not near genes chr2L 964674 intergenic not near genes chr2L_5_960001 chr2L_960001 RAL-405 30 chr2L 976858 976904 chr2L 984513 984560 roo 20 7654 8.5 7.0 7.8 2.3 7702 chr2L 976858 intergenic not near genes chr2L 980709 intergenic not near genes chr2L 984560 intergenic not near genes chr2L_20_980001 chr2L_980001 RAL-405 31 chr2L 996704 996751 chr2L 1005819 1005861 roo 12 9112 4.0 5.5 4.8 2.1 9157 chr2L 996704 intergenic not near genes chr2L 1001282 intergenic not near genes chr2L 1005861 intergenic not near genes chr2L_12_1000001 chr2L_1000001 RAL-405 32 chr2L 1035541 1035590 chr2L 1035638 1035682 4 96 7.0 5.0 6.0 0.6 141 chr2L 1035541 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035682 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-405 33 chr2L 1042603 1042611 chr2L 1042700 1042708 8 96 8.0 0.0 4.0 1.6 105 chr2L 1042603 intron IA-2 - chr2L 1042656 intron IA-2 - chr2L 1042708 intron IA-2 - chr2L_8_1040001 chr2L_1040001 RAL-405 34 chr2L 1205346 1205380 chr2L 1205454 1205488 4 108 13.0 17.0 15.0 0.2 142 chr2L 1205346 intergenic CG14342 + chr2L 1205417 intergenic CG14342 + chr2L 1205488 intergenic CG14342 + chr2L_4_1205001 chr2L_1205001 RAL-405 35 chr2L 1215533 1215570 chr2L 1215624 1215628 5 86 17.0 22.0 19.5 0.2 95 chr2L 1215533 intergenic CR45346 - chr2L 1215580 intergenic CR45346 - chr2L 1215628 intergenic CR45346 - chr2L_5_1215001 chr2L_1215001 RAL-405 36 chr2L 1220107 1220159 chr2L 1227593 1227645 blood 10 7484 4.0 5.0 4.5 1.8 7538 chr2L 1220107 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227645 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-405 37 chr2L 1244395 1244434 chr2L 1244492 1244506 9 90 15.0 17.0 16.0 0.5 111 chr2L 1244395 intergenic not near genes chr2L 1244450 intergenic not near genes chr2L 1244506 intergenic not near genes chr2L_9_1240001 chr2L_1240001 RAL-405 38 chr2L 1301750 1301782 chr2L 1302297 1302341 gypsy 5 548 0.0 7.5 3.8 1.0 591 chr2L 1301750 intergenic not near genes chr2L 1302046 intergenic not near genes chr2L 1302341 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-405 39 chr2L 1322009 1322053 chr2L 1322113 1322162 5 105 16.5 11.5 14.0 0.3 153 chr2L 1322009 intergenic not near genes chr2L 1322086 intergenic not near genes chr2L 1322162 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-405 40 chr2L 1332878 1332913 chr2L 1332971 1333017 6 102 8.0 11.0 9.5 0.6 139 chr2L 1332878 intergenic not near genes chr2L 1332948 intergenic not near genes chr2L 1333017 intergenic not near genes chr2L_6_1330001 chr2L_1330001 RAL-405 41 chr2L 1400790 1400820 chr2L 1401166 1401170 6 371 7.0 8.0 7.5 0.7 380 chr2L 1400790 intron lea - chr2L 1400980 intron lea - chr2L 1401170 intron lea - chr2L_6_1400001 chr2L_1400001 RAL-405 42 chr2L 1570675 1570713 chr2L 1573567 1573604 F-element 16 2888 3.5 2.5 3.0 4.0 2929 chr2L 1570675 intron haf + chr2L 1572140 intron haf + chr2L 1573604 intron haf + chr2L_16_1570001 chr2L_1570001 RAL-405 43 chr2L 1590947 1590990 chr2L 1591043 1591067 6 86 9.0 4.0 6.5 0.8 120 chr2L 1590947 intron haf + chr2L 1591007 intron haf + chr2L 1591067 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-405 44 chr2L 1635376 1635432 chr2L 1635532 1635583 19 149 13.0 13.5 13.2 1.3 207 chr2L 1635376 intergenic not near genes chr2L 1635480 intergenic not near genes chr2L 1635583 intergenic not near genes chr2L_19_1635001 chr2L_1635001 RAL-405 45 chr2L 1662020 1662027 chr2L 1662115 1662132 4 101 4.5 0.0 2.2 1.2 112 chr2L 1662020 intron chinmo + chr2L 1662076 intron chinmo + chr2L 1662132 intron chinmo + chr2L_4_1660001 chr2L_1660001 RAL-405 46 chr2L 1678964 1679007 chr2L 1686444 1686465 blood 14 7479 5.0 4.0 4.5 2.5 7501 chr2L 1678964 intron chinmo + chr2L 1682714 intron chinmo + chr2L 1686465 intron chinmo + chr2L_14_1680001 chr2L_1680001 RAL-405 47 chr2L 1692063 1692083 chr2L 1692164 1692184 6 99 13.5 11.5 12.5 0.4 121 chr2L 1692063 intron chinmo + chr2L 1692124 intron chinmo + chr2L 1692184 intron chinmo + chr2L_6_1690001 chr2L_1690001 RAL-405 48 chr2L 1711346 1711381 chr2L 1711685 1711701 mdg3 5 336 4.0 3.0 3.5 1.1 355 chr2L 1711346 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711701 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-405 49 chr2L 1724797 1724821 chr2L 1724899 1724913 4 100 25.5 26.5 26.0 0.1 116 chr2L 1724797 3` UTR Eno - chr2L 1724855 3` UTR Eno - chr2L 1724913 3` UTR Eno - chr2L_4_1720001 chr2L_1720001 RAL-405 50 chr2L 1905065 1905104 chr2L 1905188 1905222 6 120 20.0 13.5 16.8 0.3 157 chr2L 1905065 intron CG7337 + chr2L 1905144 intron CG7337 + chr2L 1905222 intron CG7337 + chr2L_6_1905001 chr2L_1905001 RAL-405 51 chr2L 1956239 1956283 chr2L 1956564 1956603 7 326 5.0 6.0 5.5 1.1 364 chr2L 1956239 intron erm - chr2L 1956421 intron erm - chr2L 1956603 intron erm - chr2L_7_1955001 chr2L_1955001 RAL-405 52 chr2L 1957940 1957946 chr2L 1958040 1958041 5 100 11.5 13.0 12.2 0.4 101 chr2L 1957940 intron erm - chr2L 1957990 intron erm - chr2L 1958041 intron erm - chr2L_5_1955001 chr2L_1955001 RAL-405 53 chr2L 1958750 1958760 chr2L 1958847 1958857 4 96 10.5 15.0 12.8 0.3 107 chr2L 1958750 intron erm - chr2L 1958804 intron erm - chr2L 1958857 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-405 54 chr2L 2046350 2046356 chr2L 2046416 2046445 6 75 15.5 14.5 15.0 0.4 95 chr2L 2046350 intron Kebab + chr2L 2046398 intron Kebab + chr2L 2046445 exon Kebab + chr2L_6_2045001 chr2L_2045001 RAL-405 55 chr2L 2100379 2100408 chr2L 2109533 2109567 roo 5 9157 4.0 3.5 3.8 1.0 9188 chr2L 2100379 intron dpr3 - chr2L 2104973 intron dpr3 - chr2L 2109567 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-405 56 chr2L 2262289 2262338 chr2L 2262386 2262414 6 91 7.0 7.5 7.2 0.7 125 chr2L 2262289 intergenic not near genes chr2L 2262352 intergenic not near genes chr2L 2262414 intergenic not near genes chr2L_6_2260001 chr2L_2260001 RAL-405 57 chr2L 2299310 2299360 chr2L 2299408 2299423 8 92 6.5 11.5 9.0 0.8 113 chr2L 2299310 intergenic not near genes chr2L 2299366 intergenic not near genes chr2L 2299423 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-405 58 chr2L 2330858 2330894 chr2L 2330962 2330998 6 106 22.5 19.0 20.8 0.3 140 chr2L 2330858 intron,intron CG9967 -,eys + chr2L 2330928 intron,intron CG9967 -,eys + chr2L 2330998 intron,intron CG9967 -,eys + chr2L_6_2330001 chr2L_2330001 RAL-405 59 chr2L 2349524 2349532 chr2L 2349689 2349697 7 164 17.5 14.5 16.0 0.4 173 chr2L 2349524 intron,intron CG9967 -,eys + chr2L 2349610 intron,intron CG9967 -,eys + chr2L 2349697 intron,intron CG9967 -,eys + chr2L_7_2345001 chr2L_2345001 RAL-405 60 chr2L 2349533 2349563 chr2L 2349688 2349728 5 156 16.0 14.0 15.0 0.3 195 chr2L 2349533 intron,intron CG9967 -,eys + chr2L 2349630 intron,intron CG9967 -,eys + chr2L 2349728 intron,intron CG9967 -,eys + chr2L_5_2345001 chr2L_2345001 RAL-405 61 chr2L 2392139 2392155 chr2L 2392269 2392285 5 127 17.5 5.0 11.2 0.4 146 chr2L 2392139 intron VGlut + chr2L 2392212 intron VGlut + chr2L 2392285 intron VGlut + chr2L_5_2390001 chr2L_2390001 RAL-405 62 chr2L 2392157 2392179 chr2L 2392267 2392294 6 124 10.0 4.5 7.2 0.7 137 chr2L 2392157 intron VGlut + chr2L 2392226 intron VGlut + chr2L 2392294 intron VGlut + chr2L_6_2390001 chr2L_2390001 RAL-405 63 chr2L 2427382 2427401 chr2L 2427473 2427507 4 102 10.5 12.0 11.2 0.3 125 chr2L 2427382 3` UTR CR44912 - chr2L 2427444 3` UTR CR44912 - chr2L 2427507 3` UTR CR44912 - chr2L_4_2425001 chr2L_2425001 RAL-405 64 chr2L 2459161 2459188 chr2L 2459265 2459303 7 113 23.5 29.0 26.2 0.3 142 chr2L 2459161 3` UTR dpp + chr2L 2459232 3` UTR dpp + chr2L 2459303 3` UTR dpp + chr2L_7_2455001 chr2L_2455001 RAL-405 65 chr2L 2504210 2504236 chr2L 2504308 2504320 9 94 9.5 13.0 11.2 0.7 110 chr2L 2504210 intergenic not near genes chr2L 2504265 intergenic not near genes chr2L 2504320 intergenic not near genes chr2L_9_2500001 chr2L_2500001 RAL-405 66 chr2L 2552734 2552773 chr2L 2552824 2552865 4 94 13.0 16.5 14.8 0.3 131 chr2L 2552734 exon CG3515 - chr2L 2552800 5` UTR CG3515 - chr2L 2552865 intergenic CG3515 - chr2L_4_2550001 chr2L_2550001 RAL-405 67 chr2L 2565557 2565569 chr2L 2571635 2571657 297 5 6084 3.0 5.0 4.0 1.0 6100 chr2L 2565557 exon Cyp309a2 - chr2L 2568607 intron Cyp309a2 - chr2L 2571657 exon Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-405 68 chr2L 2639132 2639171 chr2L 2639216 2639246 6 90 24.0 21.0 22.5 0.3 114 chr2L 2639132 intergenic not near genes chr2L 2639189 intergenic not near genes chr2L 2639246 intergenic not near genes chr2L_6_2635001 chr2L_2635001 RAL-405 69 chr2L 2698858 2698895 chr2L 2698964 2698977 4 93 2.0 4.0 3.0 1.0 119 chr2L 2698858 intron CG31690 + chr2L 2698918 intron CG31690 + chr2L 2698977 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-405 70 chr2L 2715675 2715699 chr2L 2715771 2715795 5 96 5.5 5.0 5.2 0.8 120 chr2L 2715675 intron CG31690 + chr2L 2715735 intron CG31690 + chr2L 2715795 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-405 71 chr2L 2772591 2772624 chr2L 2779195 2779198 297 12 6598 5.0 12.5 8.8 1.2 6607 chr2L 2772591 3` UTR Syt1 - chr2L 2775894 intron Syt1 - chr2L 2779198 3` UTR Syt1 - chr2L_12_2775001 chr2L_2775001 RAL-405 72 chr2L 2847423 2847437 chr2L 2847532 2847546 5 107 18.5 15.0 16.8 0.3 123 chr2L 2847423 intergenic CG2983 +,CG3117 - chr2L 2847484 intergenic CG2983 +,CG3117 - chr2L 2847546 intergenic CG2983 +,CG3117 - chr2L_5_2845001 chr2L_2845001 RAL-405 73 chr2L 2873460 2873467 chr2L 2873548 2873565 6 96 0.0 6.5 3.2 1.4 105 chr2L 2873460 intron CG31694 - chr2L 2873512 intron CG31694 - chr2L 2873565 intron CG31694 - chr2L_6_2870001 chr2L_2870001 RAL-405 74 chr2L 2880460 2880509 chr2L 2880556 2880599 10 89 5.5 2.0 3.8 2.1 139 chr2L 2880460 exon betaggt-II + chr2L 2880530 3` UTR betaggt-II + chr2L 2880599 3` UTR betaggt-II + chr2L_10_2880001 chr2L_2880001 RAL-405 75 chr2L 2885354 2885397 chr2L 2885449 2885480 9 91 6.0 11.0 8.5 0.9 126 chr2L 2885354 intron NTPase - chr2L 2885417 intron NTPase - chr2L 2885480 intron NTPase - chr2L_9_2885001 chr2L_2885001 RAL-405 76 chr2L 2937398 2937452 chr2L 2937495 2937537 19 87 3.5 2.5 3.0 4.8 139 chr2L 2937398 intron lilli + chr2L 2937468 intron lilli + chr2L 2937537 intron lilli + chr2L_19_2935001 chr2L_2935001 RAL-405 77 chr2L 3073023 3073064 chr2L 3078233 3078282 copia 10 5216 3.5 3.0 3.2 2.4 5259 chr2L 3073023 intron toc - chr2L 3075652 intron toc - chr2L 3078282 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-405 78 chr2L 3108845 3108877 chr2L 3108942 3108948 11 93 6.0 2.0 4.0 2.2 103 chr2L 3108845 exon toc - chr2L 3108896 intron toc - chr2L 3108948 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-405 79 chr2L 3134276 3134289 chr2L 3134372 3134385 5 96 3.0 6.0 4.5 0.9 109 chr2L 3134276 intron toc - chr2L 3134330 intron toc - chr2L 3134385 intron toc - chr2L_5_3130001 chr2L_3130001 RAL-405 80 chr2L 3181292 3181306 chr2L 3181381 3181412 6 98 6.5 13.5 10.0 0.5 120 chr2L 3181292 intron CG34393 - chr2L 3181352 intron CG34393 - chr2L 3181412 intron CG34393 - chr2L_6_3180001 chr2L_3180001 RAL-405 81 chr2L 3192214 3192240 chr2L 3192333 3192361 6 122 12.0 14.0 13.0 0.4 147 chr2L 3192214 exon CG34393 - chr2L 3192288 intron CG34393 - chr2L 3192361 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-405 82 chr2L 3202720 3202772 chr2L 3210169 3210221 mdg1 23 7444 3.5 0.5 2.0 7.7 7501 chr2L 3202720 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_23_3205001 chr2L_3205001 RAL-405 83 chr2L 3236701 3236745 chr2L 3236806 3236850 6 100 8.5 6.5 7.5 0.7 149 chr2L 3236701 intergenic not near genes chr2L 3236776 intergenic not near genes chr2L 3236850 intergenic not near genes chr2L_6_3235001 chr2L_3235001 RAL-405 84 chr2L 3251481 3251505 chr2L 3259066 3259090 springer 11 7585 5.0 4.5 4.8 1.9 7609 chr2L 3251481 intergenic not near genes chr2L 3255286 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_11_3255001 chr2L_3255001 RAL-405 85 chr2L 3251510 3251521 chr2L 3259060 3259101 springer 4 7574 3.5 4.0 3.8 0.8 7591 chr2L 3251510 intergenic not near genes chr2L 3255306 intergenic not near genes chr2L 3259101 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-405 86 chr2L 3271133 3271182 chr2L 3271275 3271319 4 138 10.5 11.0 10.8 0.3 186 chr2L 3271133 exon CG3347 + chr2L 3271226 exon CG3347 + chr2L 3271319 exon CG3347 + chr2L_4_3270001 chr2L_3270001 RAL-405 87 chr2L 3284351 3284403 chr2L 3284451 3284457 5 88 14.0 18.5 16.2 0.3 106 chr2L 3284351 intergenic not near genes chr2L 3284404 intergenic not near genes chr2L 3284457 intergenic not near genes chr2L_5_3280001 chr2L_3280001 RAL-405 88 chr2L 3291220 3291268 chr2L 3291319 3291323 8 92 9.5 5.0 7.2 1.0 103 chr2L 3291220 intergenic CG9664 - chr2L 3291272 3` UTR CG9664 - chr2L 3291323 3` UTR CG9664 - chr2L_8_3290001 chr2L_3290001 RAL-405 89 chr2L 3312086 3312114 chr2L 3312200 3312214 8 117 9.0 6.5 7.8 0.9 128 chr2L 3312086 intron CG3277 + chr2L 3312150 intron CG3277 + chr2L 3312214 intron CG3277 + chr2L_8_3310001 chr2L_3310001 RAL-405 90 chr2L 3379742 3379767 chr2L 3379871 3379876 6 122 3.0 7.0 5.0 1.0 134 chr2L 3379742 intergenic not near genes chr2L 3379809 intergenic not near genes chr2L 3379876 intergenic not near genes chr2L_6_3375001 chr2L_3375001 RAL-405 91 chr2L 3388579 3388630 chr2L 3388840 3388866 pogo 15 251 7.5 3.5 5.5 2.3 287 chr2L 3388579 intergenic CG42460 - chr2L 3388722 intergenic CG42460 - chr2L 3388866 intergenic CG42460 -,CR44791 + chr2L_15_3385001 chr2L_3385001 RAL-405 92 chr2L 3393511 3393538 chr2L 3393609 3393636 5 95 23.5 24.0 23.8 0.2 125 chr2L 3393511 intergenic not near genes chr2L 3393574 intergenic not near genes chr2L 3393636 intergenic not near genes chr2L_5_3390001 chr2L_3390001 RAL-405 93 chr2L 3437668 3437673 chr2L 3437737 3437769 4 83 8.0 10.5 9.2 0.4 101 chr2L 3437668 intergenic not near genes chr2L 3437718 intergenic not near genes chr2L 3437769 intergenic not near genes chr2L_4_3435001 chr2L_3435001 RAL-405 94 chr2L 3439566 3439599 chr2L 3439850 3439863 11 280 6.0 12.0 9.0 1.1 297 chr2L 3439566 intergenic not near genes chr2L 3439714 intergenic not near genes chr2L 3439863 intergenic not near genes chr2L_11_3435001 chr2L_3435001 RAL-405 95 chr2L 3508332 3508375 chr2L 3508430 3508465 11 93 3.5 2.5 3.0 2.8 133 chr2L 3508332 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508465 intergenic CR45299 +,tim - chr2L_11_3505001 chr2L_3505001 RAL-405 96 chr2L 3603633 3603651 chr2L 3603727 3603751 6 102 5.5 5.5 5.5 0.9 118 chr2L 3603633 intergenic not near genes chr2L 3603692 intergenic not near genes chr2L 3603751 intergenic odd - chr2L_6_3600001 chr2L_3600001 RAL-405 97 chr2L 3632357 3632383 chr2L 3632480 3632526 7 139 14.0 13.0 13.5 0.5 169 chr2L 3632357 intron for - chr2L 3632442 intron for - chr2L 3632526 intron for - chr2L_7_3630001 chr2L_3630001 RAL-405 98 chr2L 3649783 3649808 chr2L 3655006 3655031 copia 7 5220 2.0 5.5 3.8 1.5 5248 chr2L 3649783 intron for - chr2L 3652407 intron for - chr2L 3655031 intron for - chr2L_7_3650001 chr2L_3650001 RAL-405 99 chr2L 3663307 3663340 chr2L 3663406 3663439 5 97 12.5 13.5 13.0 0.4 132 chr2L 3663307 intron CG34340 + chr2L 3663373 intron CG34340 + chr2L 3663439 intron CG34340 + chr2L_5_3660001 chr2L_3660001 RAL-405 100 chr2L 3686036 3686044 chr2L 3686129 3686152 4 103 16.0 19.0 17.5 0.2 116 chr2L 3686036 intron CG34340 + chr2L 3686094 intron CG34340 + chr2L 3686152 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-405 101 chr2L 3819608 3819625 chr2L 3819704 3819721 4 95 21.0 19.5 20.2 0.2 113 chr2L 3819608 intergenic not near genes chr2L 3819664 intergenic not near genes chr2L 3819721 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-405 102 chr2L 3862407 3862424 chr2L 3862511 3862528 5 104 9.0 0.0 4.5 0.9 121 chr2L 3862407 intergenic CG3964 +,CR44078 - chr2L 3862468 intergenic CG3964 +,CR44078 - chr2L 3862528 intergenic CG3964 +,CR44078 - chr2L_5_3860001 chr2L_3860001 RAL-405 103 chr2L 3883612 3883795 chr2L 3883755 3883892 7 153 10.0 5.0 7.5 0.8 280 chr2L 3883612 intron capu - chr2L 3883752 intron capu - chr2L 3883892 intron capu - chr2L_7_3880001 chr2L_3880001 RAL-405 104 chr2L 3895319 3895352 chr2L 3895428 3895461 6 108 10.5 10.0 10.2 0.5 142 chr2L 3895319 intron capu - chr2L 3895390 intron capu - chr2L 3895461 intron capu - chr2L_6_3895001 chr2L_3895001 RAL-405 105 chr2L 3915448 3915486 chr2L 3915544 3915547 6 88 8.0 7.5 7.8 0.7 99 chr2L 3915448 intron fred - chr2L 3915498 intron fred - chr2L 3915547 intron fred - chr2L_6_3915001 chr2L_3915001 RAL-405 106 chr2L 3935927 3935945 chr2L 3936017 3936054 4 102 10.0 13.0 11.5 0.3 127 chr2L 3935927 intron fred - chr2L 3935990 intron fred - chr2L 3936054 intron fred - chr2L_4_3935001 chr2L_3935001 RAL-405 107 chr2L 3936635 3936656 chr2L 3936735 3936756 8 98 4.0 3.0 3.5 1.8 121 chr2L 3936635 intron fred - chr2L 3936696 intron fred - chr2L 3936756 intron fred - chr2L_8_3935001 chr2L_3935001 RAL-405 108 chr2L 3943777 3943797 chr2L 3943887 3943893 4 107 25.5 23.0 24.2 0.2 116 chr2L 3943777 intron fred - chr2L 3943835 intron fred - chr2L 3943893 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-405 109 chr2L 3967225 3967251 chr2L 3967322 3967359 5 106 11.5 18.0 14.8 0.3 134 chr2L 3967225 intron fred - chr2L 3967292 intron fred - chr2L 3967359 intron fred - chr2L_5_3965001 chr2L_3965001 RAL-405 110 chr2L 3985958 3985968 chr2L 3986056 3986066 4 98 12.5 14.5 13.5 0.3 108 chr2L 3985958 intron fred - chr2L 3986012 intron fred - chr2L 3986066 intron fred - chr2L_4_3985001 chr2L_3985001 RAL-405 111 chr2L 4014642 4014684 chr2L 4014797 4014825 8 157 9.0 8.0 8.5 0.8 183 chr2L 4014642 intergenic not near genes chr2L 4014734 intergenic not near genes chr2L 4014825 intergenic not near genes chr2L_8_4010001 chr2L_4010001 RAL-405 112 chr2L 4037785 4037806 chr2L 4037892 4037913 8 106 9.0 4.5 6.8 1.0 128 chr2L 4037785 intron ed + chr2L 4037849 intron ed + chr2L 4037913 intron ed + chr2L_8_4035001 chr2L_4035001 RAL-405 113 chr2L 4066051 4066064 chr2L 4068861 4068879 Juan 4 2822 3.0 3.0 3.0 1.0 2828 chr2L 4066051 intron ed + chr2L 4067465 intron ed + chr2L 4068879 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-405 114 chr2L 4124260 4124359 chr2L 4124355 4124472 4 105 12.0 16.0 14.0 0.3 212 chr2L 4124260 intergenic Sr-CI + chr2L 4124366 intergenic Sr-CI + chr2L 4124472 intergenic Sr-CI + chr2L_4_4120001 chr2L_4120001 RAL-405 115 chr2L 4150639 4150658 chr2L 4150705 4150728 6 71 0.5 3.0 1.8 2.1 89 chr2L 4150639 exon CG2955 + chr2L 4150684 exon CG2955 + chr2L 4150728 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-405 116 chr2L 4184456 4184507 chr2L 4184795 4184809 9 326 1.5 7.5 4.5 1.6 353 chr2L 4184456 intergenic not near genes chr2L 4184632 intergenic not near genes chr2L 4184809 intergenic not near genes chr2L_9_4180001 chr2L_4180001 RAL-405 117 chr2L 4222181 4222185 chr2L 4222283 4222292 4 104 10.5 15.5 13.0 0.3 111 chr2L 4222181 intergenic ft - chr2L 4222236 intergenic ft - chr2L 4222292 intergenic ft - chr2L_4_4220001 chr2L_4220001 RAL-405 118 chr2L 4351468 4351500 chr2L 4351549 4351585 7 79 2.0 1.0 1.5 2.8 117 chr2L 4351468 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351585 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-405 119 chr2L 4356612 4356633 chr2L 4356711 4356711 7 95 10.0 10.5 10.2 0.6 99 chr2L 4356612 intergenic not near genes chr2L 4356662 intergenic not near genes chr2L 4356711 intergenic not near genes chr2L_7_4355001 chr2L_4355001 RAL-405 120 chr2L 4356635 4356649 chr2L 4356709 4356748 5 90 10.5 11.5 11.0 0.4 113 chr2L 4356635 intergenic not near genes chr2L 4356692 intergenic not near genes chr2L 4356748 intergenic not near genes chr2L_5_4355001 chr2L_4355001 RAL-405 121 chr2L 4386134 4386153 chr2L 4386251 4386280 8 124 11.0 12.5 11.8 0.6 146 chr2L 4386134 intergenic Psf2 -,CG3338 - chr2L 4386207 3` UTR Psf2 - chr2L 4386280 3` UTR Psf2 - chr2L_8_4385001 chr2L_4385001 RAL-405 122 chr2L 4438997 4439033 chr2L 4439103 4439113 5 99 6.5 6.5 6.5 0.7 116 chr2L 4438997 intron CG15431 - chr2L 4439055 intron CG15431 - chr2L 4439113 5` UTR CG15431 - chr2L_5_4435001 chr2L_4435001 RAL-405 123 chr2L 4477138 4477144 chr2L 4477311 4477340 4 179 10.0 13.0 11.5 0.3 202 chr2L 4477138 intergenic ine -,dp - chr2L 4477239 intergenic ine -,dp - chr2L 4477340 intergenic dp -,ine - chr2L_4_4475001 chr2L_4475001 RAL-405 124 chr2L 4487229 4487270 chr2L 4487349 4487390 4 120 15.0 14.5 14.8 0.3 161 chr2L 4487229 intron dp - chr2L 4487310 intron dp - chr2L 4487390 intron dp - chr2L_4_4485001 chr2L_4485001 RAL-405 125 chr2L 4571849 4571889 chr2L 4571954 4571993 5 104 6.5 6.5 6.5 0.7 144 chr2L 4571849 intron dp - chr2L 4571921 intron dp - chr2L 4571993 intron dp - chr2L_5_4570001 chr2L_4570001 RAL-405 126 chr2L 4595842 4595892 chr2L 4595952 4595992 6 106 13.0 14.0 13.5 0.4 150 chr2L 4595842 intron dp - chr2L 4595917 intron dp - chr2L 4595992 intron dp - chr2L_6_4595001 chr2L_4595001 RAL-405 127 chr2L 4601687 4601736 chr2L 4609147 4609190 mdg1 15 7459 2.0 2.0 2.0 5.0 7503 chr2L 4601687 intron dp - chr2L 4605438 intron dp - chr2L 4609190 intron dp - chr2L_15_4605001 chr2L_4605001 RAL-405 128 chr2L 4672094 4672108 chr2L 4672191 4672205 5 97 11.0 14.5 12.8 0.4 111 chr2L 4672094 intergenic not near genes chr2L 4672150 intergenic not near genes chr2L 4672205 intergenic not near genes chr2L_5_4670001 chr2L_4670001 RAL-405 129 chr2L 4793288 4793321 chr2L 4793603 4793636 4 314 2.5 7.0 4.8 0.7 348 chr2L 4793288 intron CG15630 - chr2L 4793462 intron CG15630 - chr2L 4793636 intron CG15630 - chr2L_4_4790001 chr2L_4790001 RAL-405 130 chr2L 4803864 4803909 chr2L 4803968 4804013 8 100 6.0 6.0 6.0 1.1 149 chr2L 4803864 intergenic not near genes chr2L 4803938 intergenic not near genes chr2L 4804013 intergenic not near genes chr2L_8_4800001 chr2L_4800001 RAL-405 131 chr2L 4918161 4918202 chr2L 4923238 4923328 jockey 7 5108 6.0 0.0 3.0 1.8 5167 chr2L 4918161 intron hoe1 - chr2L 4920744 intron hoe1 - chr2L 4923328 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-405 132 chr2L 4923240 4923255 chr2L 4923331 4923364 8 105 0.0 3.0 1.5 3.2 124 chr2L 4923240 intron hoe1 - chr2L 4923302 intron hoe1 - chr2L 4923364 intron hoe1 - chr2L_8_4920001 chr2L_4920001 RAL-405 133 chr2L 4953500 4953539 chr2L 4953761 4953775 pogo 5 256 2.0 2.5 2.2 1.6 275 chr2L 4953500 intergenic Jon25Bii - chr2L 4953638 intergenic not near genes chr2L 4953775 intergenic not near genes chr2L_5_4950001 chr2L_4950001 RAL-405 134 chr2L 4996075 4996113 chr2L 4996172 4996178 7 87 19.0 20.0 19.5 0.3 103 chr2L 4996075 intron Rtnl1 - chr2L 4996126 intron Rtnl1 - chr2L 4996178 intron Rtnl1 - chr2L_7_4995001 chr2L_4995001 RAL-405 135 chr2L 5027960 5027989 chr2L 5028054 5028093 9 92 14.0 13.0 13.5 0.6 133 chr2L 5027960 intron vkg - chr2L 5028026 intron vkg - chr2L 5028093 intron vkg - chr2L_9_5025001 chr2L_5025001 RAL-405 136 chr2L 5028490 5028505 chr2L 5028589 5028615 4 105 15.5 18.5 17.0 0.2 125 chr2L 5028490 intergenic vkg - chr2L 5028552 intergenic vkg - chr2L 5028615 intergenic vkg - chr2L_4_5025001 chr2L_5025001 RAL-405 137 chr2L 5040678 5040716 chr2L 5040789 5040802 12 111 12.0 13.0 12.5 0.9 124 chr2L 5040678 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040740 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040802 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_12_5040001 chr2L_5040001 RAL-405 138 chr2L 5061408 5061433 chr2L 5061509 5061528 6 94 18.0 11.0 14.5 0.4 120 chr2L 5061408 intron qtc + chr2L 5061468 intron qtc + chr2L 5061528 intron qtc + chr2L_6_5060001 chr2L_5060001 RAL-405 139 chr2L 5061439 5061453 chr2L 5061505 5061548 6 77 14.0 10.5 12.2 0.5 109 chr2L 5061439 intron qtc + chr2L 5061494 intron qtc + chr2L 5061548 intron qtc + chr2L_6_5060001 chr2L_5060001 RAL-405 140 chr2L 5083728 5083774 chr2L 5083823 5083870 12 91 5.5 5.5 5.5 1.8 142 chr2L 5083728 intron pgant5 - chr2L 5083799 intron pgant5 - chr2L 5083870 intron pgant5 - chr2L_12_5080001 chr2L_5080001 RAL-405 141 chr2L 5092397 5092439 chr2L 5092504 5092521 11 100 6.0 10.0 8.0 1.2 124 chr2L 5092397 intron pgant5 - chr2L 5092459 intron pgant5 - chr2L 5092521 intron pgant5 - chr2L_11_5090001 chr2L_5090001 RAL-405 142 chr2L 5224360 5224392 chr2L 5224459 5224491 4 99 21.5 20.5 21.0 0.2 131 chr2L 5224360 intron tkv - chr2L 5224426 intron tkv - chr2L 5224491 intron tkv - chr2L_4_5220001 chr2L_5220001 RAL-405 143 chr2L 5234474 5234489 chr2L 5234589 5234599 7 118 10.5 15.0 12.8 0.5 125 chr2L 5234474 intron tkv - chr2L 5234536 intron tkv - chr2L 5234599 intron tkv - chr2L_7_5230001 chr2L_5230001 RAL-405 144 chr2L 5342751 5342804 chr2L 5345151 5345157 Doc 9 2386 4.0 6.0 5.0 1.5 2406 chr2L 5342751 intergenic not near genes chr2L 5343954 intergenic not near genes chr2L 5345157 intergenic not near genes chr2L_9_5340001 chr2L_5340001 RAL-405 145 chr2L 5381820 5381855 chr2L 5381924 5381959 8 101 1.5 7.0 4.2 1.5 139 chr2L 5381820 intergenic not near genes chr2L 5381890 intergenic not near genes chr2L 5381959 intergenic not near genes chr2L_8_5380001 chr2L_5380001 RAL-405 146 chr2L 5475148 5475163 chr2L 5475273 5475288 4 123 2.0 4.5 3.2 1.0 140 chr2L 5475148 intergenic not near genes chr2L 5475218 intergenic not near genes chr2L 5475288 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-405 147 chr2L 5509345 5509353 chr2L 5509458 5509471 5 117 10.5 7.5 9.0 0.5 126 chr2L 5509345 intergenic not near genes chr2L 5509408 intergenic not near genes chr2L 5509471 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-405 148 chr2L 5511315 5511357 chr2L 5511408 5511460 10 99 6.5 7.5 7.0 1.2 145 chr2L 5511315 intergenic not near genes chr2L 5511388 intergenic not near genes chr2L 5511460 intergenic not near genes chr2L_10_5510001 chr2L_5510001 RAL-405 149 chr2L 5647527 5647548 chr2L 5647652 5647674 5 122 8.5 8.5 8.5 0.5 147 chr2L 5647527 intron CG31646 - chr2L 5647600 intron CG31646 - chr2L 5647674 intron CG31646 - chr2L_5_5645001 chr2L_5645001 RAL-405 150 chr2L 5695842 5695891 chr2L 5695952 5696003 8 108 12.0 11.0 11.5 0.6 161 chr2L 5695842 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5696003 intergenic not near genes chr2L_8_5695001 chr2L_5695001 RAL-405 151 chr2L 5707677 5707727 chr2L 5707774 5707822 15 94 16.0 16.0 16.0 0.9 145 chr2L 5707677 intron CG7236 + chr2L 5707750 intron CG7236 + chr2L 5707822 intron CG7236 + chr2L_15_5705001 chr2L_5705001 RAL-405 152 chr2L 5720252 5720292 chr2L 5720349 5720363 10 95 14.5 13.0 13.8 0.7 111 chr2L 5720252 intron CG11149 - chr2L 5720308 intron CG11149 - chr2L 5720363 intron CG11149 - chr2L_10_5720001 chr2L_5720001 RAL-405 153 chr2L 5726199 5726234 chr2L 5726298 5726333 8 96 14.0 9.5 11.8 0.6 134 chr2L 5726199 intron CG11030 + chr2L 5726266 intron CG11030 + chr2L 5726333 intron CG11030 + chr2L_8_5725001 chr2L_5725001 RAL-405 154 chr2L 5784938 5784954 chr2L 5785041 5785047 4 100 16.0 16.5 16.2 0.2 109 chr2L 5784938 intron CG9171 - chr2L 5784992 intron CG9171 - chr2L 5785047 intron CG9171 - chr2L_4_5780001 chr2L_5780001 RAL-405 155 chr2L 5816186 5816217 chr2L 5816257 5816288 5 84 4.5 6.5 5.5 0.8 102 chr2L 5816186 intergenic not near genes chr2L 5816237 intergenic not near genes chr2L 5816288 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-405 156 chr2L 5819651 5819703 chr2L 5819755 5819766 7 92 13.0 13.0 13.0 0.5 115 chr2L 5819651 intergenic not near genes chr2L 5819708 intergenic not near genes chr2L 5819766 intergenic not near genes chr2L_7_5815001 chr2L_5815001 RAL-405 157 chr2L 5820376 5820395 chr2L 5820552 5820571 6 175 8.0 10.0 9.0 0.6 195 chr2L 5820376 intergenic not near genes chr2L 5820474 intergenic not near genes chr2L 5820571 intergenic not near genes chr2L_6_5820001 chr2L_5820001 RAL-405 158 chr2L 5820400 5820419 chr2L 5820547 5820595 8 155 9.5 10.0 9.8 0.7 195 chr2L 5820400 intergenic not near genes chr2L 5820498 intergenic not near genes chr2L 5820595 intergenic not near genes chr2L_8_5820001 chr2L_5820001 RAL-405 159 chr2L 5827716 5827722 chr2L 5836717 5836750 roo 4 9021 5.5 3.5 4.5 0.7 9034 chr2L 5827716 intron TrissinR + chr2L 5832233 intron TrissinR + chr2L 5836750 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-405 160 chr2L 5926254 5926450 chr2L 5926349 5926558 5 132 1.5 2.0 1.8 1.8 304 chr2L 5926254 intron dsf + chr2L 5926406 intron dsf + chr2L 5926558 intron dsf + chr2L_5_5925001 chr2L_5925001 RAL-405 161 chr2L 5946695 5946745 chr2L 5946798 5946828 5 94 2.5 8.5 5.5 0.8 133 chr2L 5946695 intron Gpdh + chr2L 5946762 intron Gpdh + chr2L 5946828 intron Gpdh + chr2L_5_5945001 chr2L_5945001 RAL-405 162 chr2L 5962249 5962305 chr2L 5962345 5962396 13 94 16.5 16.5 16.5 0.7 147 chr2L 5962249 intergenic not near genes chr2L 5962322 intergenic not near genes chr2L 5962396 intergenic not near genes chr2L_13_5960001 chr2L_5960001 RAL-405 163 chr2L 5989024 5989055 chr2L 5989109 5989131 5 84 18.5 20.5 19.5 0.2 107 chr2L 5989024 intergenic ifc +,lid - chr2L 5989078 intergenic ifc +,lid - chr2L 5989131 intergenic lid -,ifc + chr2L_5_5985001 chr2L_5985001 RAL-405 164 chr2L 6002427 6002452 chr2L 6002533 6002548 6 103 15.5 17.5 16.5 0.3 121 chr2L 6002427 3` UTR Tsp26A + chr2L 6002488 3` UTR Tsp26A + chr2L 6002548 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-405 165 chr2L 6002458 6002472 chr2L 6002528 6002563 6 88 14.5 17.5 16.0 0.4 105 chr2L 6002458 3` UTR Tsp26A + chr2L 6002510 3` UTR Tsp26A + chr2L 6002563 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-405 166 chr2L 6007100 6007109 chr2L 6007191 6007200 4 94 15.0 14.0 14.5 0.3 100 chr2L 6007100 intergenic CG9098 -,Gal - chr2L 6007150 intergenic CG9098 -,Gal - chr2L 6007200 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-405 167 chr2L 6011337 6011359 chr2L 6011497 6011519 5 160 6.0 1.5 3.8 1.0 182 chr2L 6011337 intron CG9098 - chr2L 6011428 intron CG9098 - chr2L 6011519 intron CG9098 - chr2L_5_6010001 chr2L_6010001 RAL-405 168 chr2L 6050424 6050466 chr2L 6050547 6050550 4 111 9.0 14.5 11.8 0.3 126 chr2L 6050424 3` UTR CG12393 + chr2L 6050487 intergenic CG12393 +,CG9135 + chr2L 6050550 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-405 169 chr2L 6173867 6173881 chr2L 6173963 6173977 5 96 17.5 7.0 12.2 0.4 110 chr2L 6173867 intergenic not near genes chr2L 6173922 intergenic not near genes chr2L 6173977 intergenic not near genes chr2L_5_6170001 chr2L_6170001 RAL-405 170 chr2L 6185435 6185465 chr2L 6185526 6185558 4 86 6.5 11.5 9.0 0.4 123 chr2L 6185435 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185558 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-405 171 chr2L 6185466 6185469 chr2L 6185524 6185560 4 66 6.5 11.5 9.0 0.4 94 chr2L 6185466 intron CG34380 + chr2L 6185513 intron CG34380 + chr2L 6185560 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-405 172 chr2L 6261976 6262001 chr2L 6262072 6262087 5 94 5.5 7.5 6.5 0.7 111 chr2L 6261976 intron Ddr + chr2L 6262032 intron Ddr + chr2L 6262087 intron Ddr + chr2L_5_6260001 chr2L_6260001 RAL-405 173 chr2L 6268493 6268531 chr2L 6268599 6268637 4 101 9.5 4.5 7.0 0.5 144 chr2L 6268493 intron Ddr + chr2L 6268565 intron Ddr + chr2L 6268637 intron Ddr + chr2L_4_6265001 chr2L_6265001 RAL-405 174 chr2L 6279628 6279641 chr2L 6279721 6279738 INE-1 4 93 19.5 8.0 13.8 0.3 110 chr2L 6279628 intron Ddr + chr2L 6279683 intron Ddr + chr2L 6279738 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-405 175 chr2L 6308292 6308337 chr2L 6308395 6308440 9 102 14.5 14.0 14.2 0.6 148 chr2L 6308292 intron Ddr + chr2L 6308366 intron Ddr + chr2L 6308440 intron,3` UTR Ddr +,CG43922 - chr2L_9_6305001 chr2L_6305001 RAL-405 176 chr2L 6363129 6363179 chr2L 6366071 6366105 Burdock 13 2933 6.5 1.5 4.0 2.6 2976 chr2L 6363129 intergenic not near genes chr2L 6364617 intergenic not near genes chr2L 6366105 intergenic not near genes chr2L_13_6360001 chr2L_6360001 RAL-405 177 chr2L 6414724 6414767 chr2L 6414824 6414867 8 96 23.5 22.5 23.0 0.3 143 chr2L 6414724 3` UTR CG13982 + chr2L 6414796 3` UTR CG13982 + chr2L 6414867 3` UTR CG13982 + chr2L_8_6410001 chr2L_6410001 RAL-405 178 chr2L 6426859 6426883 chr2L 6445115 6445148 roo 9 18267 9.0 4.5 6.8 1.2 18289 chr2L 6426859 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-405 179 chr2L 6544357 6544384 chr2L 6544464 6544496 11 109 5.5 2.5 4.0 2.2 139 chr2L 6544357 intron eya - chr2L 6544426 intron eya - chr2L 6544496 intron eya - chr2L_11_6540001 chr2L_6540001 RAL-405 180 chr2L 6544386 6544395 chr2L 6544463 6544507 4 101 4.5 2.5 3.5 0.9 121 chr2L 6544386 intron eya - chr2L 6544446 intron eya - chr2L 6544507 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-405 181 chr2L 6564823 6564855 chr2L 6564936 6564953 12 108 10.0 1.0 5.5 1.8 130 chr2L 6564823 3` UTR CG13766 - chr2L 6564888 3` UTR CG13766 - chr2L 6564953 3` UTR CG13766 - chr2L_12_6560001 chr2L_6560001 RAL-405 182 chr2L 6626869 6626920 chr2L 6626974 6626999 7 96 13.5 9.0 11.2 0.6 130 chr2L 6626869 intron Oatp26F - chr2L 6626934 intron Oatp26F - chr2L 6626999 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-405 183 chr2L 6694617 6694644 chr2L 6694713 6694730 5 87 8.5 5.0 6.8 0.6 113 chr2L 6694617 intron Tsp - chr2L 6694674 intron Tsp - chr2L 6694730 intron Tsp - chr2L_5_6690001 chr2L_6690001 RAL-405 184 chr2L 6744544 6744593 chr2L 6744650 6744699 11 100 1.0 5.5 3.2 2.6 155 chr2L 6744544 intron CG11221 + chr2L 6744622 intron CG11221 + chr2L 6744699 intron,exon CG11221 +,CG31910 - chr2L_11_6740001 chr2L_6740001 RAL-405 185 chr2L 6799521 6799570 chr2L 6799628 6799677 10 103 11.5 8.0 9.8 0.9 156 chr2L 6799521 5` UTR CR43610 + chr2L 6799599 5` UTR CR43610 + chr2L 6799677 intergenic CR43610 +,CG17376 - chr2L_10_6795001 chr2L_6795001 RAL-405 186 chr2L 6850358 6850419 chr2L 6850461 6850515 22 106 7.0 4.0 5.5 3.4 157 chr2L 6850358 intergenic not near genes chr2L 6850436 intergenic not near genes chr2L 6850515 intergenic not near genes chr2L_22_6850001 chr2L_6850001 RAL-405 187 chr2L 6869357 6869376 chr2L 6869456 6869475 4 99 20.5 23.5 22.0 0.2 118 chr2L 6869357 intron Nha1 - chr2L 6869416 intron Nha1 - chr2L 6869475 intron Nha1 - chr2L_4_6865001 chr2L_6865001 RAL-405 188 chr2L 6876772 6876809 chr2L 6882967 6883009 diver 7 6195 4.5 5.0 4.8 1.2 6237 chr2L 6876772 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6883009 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-405 189 chr2L 6933924 6933935 chr2L 6934023 6934034 6 99 2.0 0.5 1.2 2.7 110 chr2L 6933924 exon CG18304 - chr2L 6933979 intron CG18304 - chr2L 6934034 intron CG18304 - chr2L_6_6930001 chr2L_6930001 RAL-405 190 chr2L 6968467 6968507 chr2L 6968644 6968689 16 176 15.0 14.5 14.8 1.0 222 chr2L 6968467 intergenic snRNP-U1-70K - chr2L 6968578 intergenic snRNP-U1-70K - chr2L 6968689 intergenic snRNP-U1-70K - chr2L_16_6965001 chr2L_6965001 RAL-405 191 chr2L 7005222 7005254 chr2L 7005333 7005370 6 111 9.0 14.0 11.5 0.5 148 chr2L 7005222 intron uif - chr2L 7005296 intron uif - chr2L 7005370 intron uif - chr2L_6_7005001 chr2L_7005001 RAL-405 192 chr2L 7007399 7007429 chr2L 7007522 7007537 4 116 15.5 8.0 11.8 0.3 138 chr2L 7007399 intron uif - chr2L 7007468 intron uif - chr2L 7007537 intron uif - chr2L_4_7005001 chr2L_7005001 RAL-405 193 chr2L 7025903 7025920 chr2L 7026006 7026025 5 105 11.5 14.0 12.8 0.4 122 chr2L 7025903 intron CG31908 - chr2L 7025964 intron CG31908 - chr2L 7026025 intron CG31908 - chr2L_5_7025001 chr2L_7025001 RAL-405 194 chr2L 7030059 7030103 chr2L 7030160 7030179 6 89 9.5 10.0 9.8 0.6 120 chr2L 7030059 intergenic Rab30 - chr2L 7030119 intergenic Rab30 - chr2L 7030179 intergenic Rab30 - chr2L_6_7030001 chr2L_7030001 RAL-405 195 chr2L 7043502 7043527 chr2L 7043604 7043629 5 105 9.0 14.5 11.8 0.4 127 chr2L 7043502 intron milt + chr2L 7043566 intron milt + chr2L 7043629 intron milt + chr2L_5_7040001 chr2L_7040001 RAL-405 196 chr2L 7100966 7100987 chr2L 7101209 7101233 6 246 10.0 3.0 6.5 0.8 267 chr2L 7100966 intron Pvf3 - chr2L 7101100 intron Pvf3 - chr2L 7101233 intron Pvf3 - chr2L_6_7100001 chr2L_7100001 RAL-405 197 chr2L 7100992 7101016 chr2L 7101208 7101262 4 237 7.0 3.0 5.0 0.7 270 chr2L 7100992 intron Pvf3 - chr2L 7101127 intron Pvf3 - chr2L 7101262 intron Pvf3 - chr2L_4_7100001 chr2L_7100001 RAL-405 198 chr2L 7111736 7111773 chr2L 7111841 7111844 6 98 1.0 0.5 0.8 3.3 108 chr2L 7111736 intron Pvf3 - chr2L 7111790 intron Pvf3 - chr2L 7111844 intron Pvf3 - chr2L_6_7110001 chr2L_7110001 RAL-405 199 chr2L 7125772 7125799 chr2L 7125905 7125930 5 134 13.5 8.0 10.8 0.4 158 chr2L 7125772 intron Pvf3 - chr2L 7125851 intron Pvf3 - chr2L 7125930 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-405 200 chr2L 7126841 7126877 chr2L 7126940 7126975 16 98 18.0 9.0 13.5 1.1 134 chr2L 7126841 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126975 intron Pvf3 - chr2L_16_7125001 chr2L_7125001 RAL-405 201 chr2L 7143146 7143181 chr2L 7143247 7143282 6 101 12.5 19.0 15.8 0.4 136 chr2L 7143146 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143214 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143282 intron,5` UTR Pvf3 -,CR44612 + chr2L_6_7140001 chr2L_7140001 RAL-405 202 chr2L 7193676 7193693 chr2L 7193780 7193797 4 103 4.5 15.0 9.8 0.4 121 chr2L 7193676 intron CG4497 - chr2L 7193736 intron CG4497 - chr2L 7193797 intron CG4497 - chr2L_4_7190001 chr2L_7190001 RAL-405 203 chr2L 7244732 7244750 chr2L 7244852 7244895 5 129 12.0 5.5 8.8 0.5 163 chr2L 7244732 intron Ndae1 - chr2L 7244814 intron Ndae1 - chr2L 7244895 intron Ndae1 - chr2L_5_7240001 chr2L_7240001 RAL-405 204 chr2L 7331644 7331686 chr2L 7331751 7331768 10 102 7.5 5.5 6.5 1.3 124 chr2L 7331644 intergenic not near genes chr2L 7331706 intergenic not near genes chr2L 7331768 intergenic not near genes chr2L_10_7330001 chr2L_7330001 RAL-405 205 chr2L 7355302 7355347 chr2L 7355403 7355433 9 96 8.5 9.5 9.0 0.9 131 chr2L 7355302 intergenic not near genes chr2L 7355368 intergenic not near genes chr2L 7355433 intergenic not near genes chr2L_9_7355001 chr2L_7355001 RAL-405 206 chr2L 7363506 7363549 chr2L 7363604 7363647 6 93 9.5 9.0 9.2 0.6 141 chr2L 7363506 5` UTR Wnt10 + chr2L 7363576 5` UTR Wnt10 + chr2L 7363647 5` UTR Wnt10 + chr2L_6_7360001 chr2L_7360001 RAL-405 207 chr2L 7436191 7436219 chr2L 7436294 7436333 7 106 1.0 4.0 2.5 2.0 142 chr2L 7436191 intergenic not near genes chr2L 7436262 intergenic not near genes chr2L 7436333 intergenic not near genes chr2L_7_7435001 chr2L_7435001 RAL-405 208 chr2L 7447770 7447822 chr2L 7447885 7447937 13 111 12.0 8.0 10.0 1.2 167 chr2L 7447770 5` UTR santa-maria - chr2L 7447854 5` UTR santa-maria - chr2L 7447937 5` UTR santa-maria - chr2L_13_7445001 chr2L_7445001 RAL-405 209 chr2L 7465158 7465201 chr2L 7465282 7465325 12 125 13.5 5.5 9.5 1.1 167 chr2L 7465158 intergenic not near genes chr2L 7465242 intergenic not near genes chr2L 7465325 intergenic not near genes chr2L_12_7465001 chr2L_7465001 RAL-405 210 chr2L 7502722 7502743 chr2L 7502818 7502839 4 95 8.5 11.0 9.8 0.4 117 chr2L 7502722 intron RapGAP1 - chr2L 7502780 intron RapGAP1 - chr2L 7502839 intron RapGAP1 - chr2L_4_7500001 chr2L_7500001 RAL-405 211 chr2L 7502746 7502767 chr2L 7502817 7502845 5 78 8.5 11.0 9.8 0.5 99 chr2L 7502746 intron RapGAP1 - chr2L 7502796 intron RapGAP1 - chr2L 7502845 intron RapGAP1 - chr2L_5_7500001 chr2L_7500001 RAL-405 212 chr2L 7515543 7515565 chr2L 7515788 7515828 4 254 7.5 7.0 7.2 0.5 285 chr2L 7515543 intron RapGAP1 - chr2L 7515686 intron RapGAP1 - chr2L 7515828 intron RapGAP1 - chr2L_4_7515001 chr2L_7515001 RAL-405 213 chr2L 7567470 7567507 chr2L 7567567 7567604 4 94 7.0 8.0 7.5 0.5 134 chr2L 7567470 intron RapGAP1 - chr2L 7567537 intron RapGAP1 - chr2L 7567604 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-405 214 chr2L 7579185 7579205 chr2L 7579386 7579416 BS 7 208 16.5 18.5 17.5 0.4 231 chr2L 7579185 intergenic RapGAP1 - chr2L 7579300 intergenic RapGAP1 - chr2L 7579416 intergenic RapGAP1 - chr2L_7_7575001 chr2L_7575001 RAL-405 215 chr2L 7670292 7670316 chr2L 7670386 7670417 5 101 5.5 4.0 4.8 0.9 125 chr2L 7670292 intron,intron Slob -,Myo28B1 + chr2L 7670354 intron,intron Slob -,Myo28B1 + chr2L 7670417 intron,intron Slob -,Myo28B1 + chr2L_5_7670001 chr2L_7670001 RAL-405 216 chr2L 7788832 7788854 chr2L 7788929 7788951 7 97 3.5 2.5 3.0 1.8 119 chr2L 7788832 intron CG7149 - chr2L 7788892 intron CG7149 - chr2L 7788951 intron CG7149 - chr2L_7_7785001 chr2L_7785001 RAL-405 217 chr2L 7922721 7922776 chr2L 7922822 7922877 24 95 3.5 4.0 3.8 5.0 156 chr2L 7922721 intron Snoo - chr2L 7922799 intron Snoo - chr2L 7922877 intron Snoo - chr2L_24_7920001 chr2L_7920001 RAL-405 218 chr2L 7928247 7928298 chr2L 7928353 7928358 9 96 2.0 2.0 2.0 3.0 111 chr2L 7928247 intron Snoo - chr2L 7928302 intron Snoo - chr2L 7928358 intron Snoo - chr2L_9_7925001 chr2L_7925001 RAL-405 219 chr2L 7959035 7959052 chr2L 7960456 7960482 pogo 7 1425 11.0 8.5 9.8 0.6 1447 chr2L 7959035 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960482 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-405 220 chr2L 7986904 7986918 chr2L 7987014 7987034 5 109 5.0 14.5 9.8 0.5 130 chr2L 7986904 3` UTR pes - chr2L 7986969 3` UTR pes - chr2L 7987034 3` UTR pes - chr2L_5_7985001 chr2L_7985001 RAL-405 221 chr2L 7997013 7997060 chr2L 7997133 7997175 10 118 16.0 26.5 21.2 0.5 162 chr2L 7997013 intron CG7227 - chr2L 7997094 intron CG7227 - chr2L 7997175 intron CG7227 - chr2L_10_7995001 chr2L_7995001 RAL-405 222 chr2L 8003035 8003063 chr2L 8003137 8003140 6 97 25.5 28.0 26.8 0.2 105 chr2L 8003035 intron Wwox - chr2L 8003088 intron Wwox - chr2L 8003140 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-405 223 chr2L 8018818 8018835 chr2L 8023581 8023639 Doc 5 4795 0.5 2.5 1.5 2.0 4821 chr2L 8018818 intron Tg + chr2L 8021228 intron Tg + chr2L 8023639 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-405 224 chr2L 8044095 8044123 chr2L 8044194 8044222 10 97 1.5 5.5 3.5 2.2 127 chr2L 8044095 intron CG7466 + chr2L 8044158 intron CG7466 + chr2L 8044222 intron CG7466 + chr2L_10_8040001 chr2L_8040001 RAL-405 225 chr2L 8167125 8167177 chr2L 8167236 8167257 6 100 10.0 6.0 8.0 0.7 132 chr2L 8167125 intron Piezo + chr2L 8167191 intron Piezo + chr2L 8167257 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-405 226 chr2L 8167702 8167738 chr2L 8167801 8167811 4 84 9.0 5.5 7.2 0.5 109 chr2L 8167702 intron Piezo + chr2L 8167756 intron Piezo + chr2L 8167811 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-405 227 chr2L 8171279 8171300 chr2L 8171370 8171400 10 94 0.5 6.5 3.5 2.2 121 chr2L 8171279 intron Piezo + chr2L 8171340 intron Piezo + chr2L 8171400 intron Piezo + chr2L_10_8170001 chr2L_8170001 RAL-405 228 chr2L 8230309 8230344 chr2L 8230407 8230444 6 99 9.5 15.0 12.2 0.5 135 chr2L 8230309 5` UTR Pvr - chr2L 8230376 intron Pvr - chr2L 8230444 intron Pvr - chr2L_6_8230001 chr2L_8230001 RAL-405 229 chr2L 8269996 8270026 chr2L 8270078 8270128 9 90 14.0 12.0 13.0 0.6 132 chr2L 8269996 intron Btk29A - chr2L 8270062 intron Btk29A - chr2L 8270128 intron Btk29A - chr2L_9_8270001 chr2L_8270001 RAL-405 230 chr2L 8271631 8271655 chr2L 8271720 8271751 8 94 18.5 19.0 18.8 0.4 120 chr2L 8271631 intron Btk29A - chr2L 8271691 intron Btk29A - chr2L 8271751 intron Btk29A - chr2L_8_8270001 chr2L_8270001 RAL-405 231 chr2L 8336624 8336654 chr2L 8339902 8339943 5 3283 9.5 9.0 9.2 0.5 3319 chr2L 8336624 intergenic not near genes chr2L 8338284 intergenic CG14274 + chr2L 8339943 intron CG14274 + chr2L_5_8335001 chr2L_8335001 RAL-405 232 chr2L 8351538 8351565 chr2L 8351635 8351662 6 97 0.0 4.0 2.0 2.0 124 chr2L 8351538 intergenic CG7778 + chr2L 8351600 intergenic CG7778 + chr2L 8351662 intergenic not near genes chr2L_6_8350001 chr2L_8350001 RAL-405 233 chr2L 8452400 8452450 chr2L 8461591 8461615 roo 20 9186 6.0 6.0 6.0 2.9 9215 chr2L 8452400 intron fu12 - chr2L 8457008 intron fu12 - chr2L 8461615 intron fu12 - chr2L_20_8455001 chr2L_8455001 RAL-405 234 chr2L 8498184 8498237 chr2L 8498285 8498338 15 99 3.5 2.5 3.0 3.8 154 chr2L 8498184 intron Dh31 - chr2L 8498261 intron Dh31 - chr2L 8498338 intron Dh31 - chr2L_15_8495001 chr2L_8495001 RAL-405 235 chr2L 8508978 8508984 chr2L 8509100 8509101 5 121 9.0 12.0 10.5 0.4 123 chr2L 8508978 intergenic CG13096 - chr2L 8509040 intergenic CG13096 - chr2L 8509101 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-405 236 chr2L 8508999 8509005 chr2L 8509091 8509126 5 116 9.5 11.0 10.2 0.4 127 chr2L 8508999 intergenic CG13096 - chr2L 8509062 intergenic CG13096 - chr2L 8509126 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-405 237 chr2L 8538144 8538169 chr2L 8538240 8538252 9 94 17.5 7.0 12.2 0.7 108 chr2L 8538144 intron CG17834 + chr2L 8538198 intron CG17834 + chr2L 8538252 intron CG17834 + chr2L_9_8535001 chr2L_8535001 RAL-405 238 chr2L 8554351 8554390 chr2L 8554462 8554501 7 115 5.5 1.5 3.5 1.6 150 chr2L 8554351 intron Sema-1a + chr2L 8554426 intron Sema-1a + chr2L 8554501 intron Sema-1a + chr2L_7_8550001 chr2L_8550001 RAL-405 239 chr2L 8578452 8578452 chr2L 16071771 16071771 4 7493319 19.0 9.0 14.0 0.3 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_12325001 chr2L_12325001 RAL-405 240 chr2L 8588886 8588914 chr2L 8588997 8589019 7 107 11.0 9.0 10.0 0.6 133 chr2L 8588886 intron Sema-1a + chr2L 8588952 intron Sema-1a + chr2L 8589019 intron Sema-1a + chr2L_7_8585001 chr2L_8585001 RAL-405 241 chr2L 8594461 8594490 chr2L 8601535 8601563 297 9 7070 5.0 4.0 4.5 1.6 7102 chr2L 8594461 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598012 intron Sema-1a + chr2L 8601563 intron Sema-1a + chr2L_9_8595001 chr2L_8595001 RAL-405 242 chr2L 8719186 8719232 chr2L 8719282 8719317 4 92 11.5 7.0 9.2 0.4 131 chr2L 8719186 intron raw - chr2L 8719252 intron raw - chr2L 8719317 intron raw - chr2L_4_8715001 chr2L_8715001 RAL-405 243 chr2L 8723101 8723138 chr2L 8731491 8731516 Tirant 15 8390 4.0 4.5 4.2 2.9 8415 chr2L 8723101 intron raw - chr2L 8727308 intron raw - chr2L 8731516 intron raw - chr2L_15_8725001 chr2L_8725001 RAL-405 244 chr2L 8736249 8736256 chr2L 8736349 8736356 4 100 11.5 19.0 15.2 0.2 107 chr2L 8736249 intron raw - chr2L 8736302 intron raw - chr2L 8736356 intron raw - chr2L_4_8735001 chr2L_8735001 RAL-405 245 chr2L 8799780 8799832 chr2L 8799916 8799916 10 116 3.5 5.0 4.2 1.9 136 chr2L 8799780 intergenic not near genes chr2L 8799848 intergenic not near genes chr2L 8799916 intergenic not near genes chr2L_10_8795001 chr2L_8795001 RAL-405 246 chr2L 8815885 8815896 chr2L 8815943 8816006 4 97 6.5 5.5 6.0 0.6 121 chr2L 8815885 intergenic not near genes chr2L 8815946 intergenic not near genes chr2L 8816006 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-405 247 chr2L 8820909 8820953 chr2L 8821008 8821052 9 95 5.0 5.5 5.2 1.5 143 chr2L 8820909 intergenic not near genes chr2L 8820980 intergenic not near genes chr2L 8821052 intergenic not near genes chr2L_9_8820001 chr2L_8820001 RAL-405 248 chr2L 8956208 8956236 chr2L 8956300 8956333 7 94 12.5 10.0 11.2 0.6 125 chr2L 8956208 intron CG31886 - chr2L 8956270 intron CG31886 - chr2L 8956333 intron CG31886 - chr2L_7_8955001 chr2L_8955001 RAL-405 249 chr2L 9000270 9000311 chr2L 9007790 9007831 roo 13 7524 2.5 1.5 2.0 4.3 7561 chr2L 9000270 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007831 intergenic not near genes chr2L_13_9000001 chr2L_9000001 RAL-405 250 chr2L 9025518 9025567 chr2L 9025615 9025639 8 90 17.0 18.5 17.8 0.4 121 chr2L 9025518 intron CG9582 - chr2L 9025578 intron CG9582 - chr2L 9025639 intron,3` UTR CG9582 -,CR44352 - chr2L_8_9025001 chr2L_9025001 RAL-405 251 chr2L 9040023 9040049 chr2L 9040130 9040146 5 104 4.5 3.0 3.8 1.0 123 chr2L 9040023 intergenic not near genes chr2L 9040084 intergenic not near genes chr2L 9040146 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-405 252 chr2L 9042583 9042588 chr2L 9042672 9042702 5 106 0.0 3.5 1.8 1.8 119 chr2L 9042583 intergenic not near genes chr2L 9042642 intergenic not near genes chr2L 9042702 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-405 253 chr2L 9141317 9141360 chr2L 9141414 9141461 5 98 3.5 7.0 5.2 0.8 144 chr2L 9141317 intron CG32982 + chr2L 9141389 intron CG32982 + chr2L 9141461 intron CG32982 + chr2L_5_9140001 chr2L_9140001 RAL-405 254 chr2L 9156548 9156581 chr2L 9156646 9156679 6 93 12.0 14.0 13.0 0.4 131 chr2L 9156548 exon CG32982 + chr2L 9156614 intron CG32982 + chr2L 9156679 intron CG32982 + chr2L_6_9155001 chr2L_9155001 RAL-405 255 chr2L 9158770 9158790 chr2L 9158887 9158907 7 116 10.5 0.0 5.2 1.1 137 chr2L 9158770 intron CG32982 + chr2L 9158838 intron CG32982 + chr2L 9158907 intron CG32982 + chr2L_7_9155001 chr2L_9155001 RAL-405 256 chr2L 9234896 9234930 chr2L 9234994 9235032 11 99 0.5 8.5 4.5 2.0 136 chr2L 9234896 intron tai + chr2L 9234964 intron tai + chr2L 9235032 intron tai + chr2L_11_9230001 chr2L_9230001 RAL-405 257 chr2L 9264340 9264376 chr2L 9264445 9264496 10 115 12.5 12.5 12.5 0.7 156 chr2L 9264340 intron Ggamma30A + chr2L 9264418 intron Ggamma30A + chr2L 9264496 intron Ggamma30A + chr2L_10_9260001 chr2L_9260001 RAL-405 258 chr2L 9280012 9280019 chr2L 9280082 9280133 6 104 1.0 6.5 3.8 1.2 121 chr2L 9280012 intron Ggamma30A + chr2L 9280072 intron Ggamma30A + chr2L 9280133 intron Ggamma30A + chr2L_6_9280001 chr2L_9280001 RAL-405 259 chr2L 9297358 9297403 chr2L 9297455 9297500 17 94 3.5 3.5 3.5 3.8 142 chr2L 9297358 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297500 3` UTR Ggamma30A + chr2L_17_9295001 chr2L_9295001 RAL-405 260 chr2L 9303357 9303476 chr2L 9303475 9303573 5 116 18.5 15.0 16.8 0.3 216 chr2L 9303357 intergenic not near genes chr2L 9303465 intergenic not near genes chr2L 9303573 intergenic not near genes chr2L_5_9300001 chr2L_9300001 RAL-405 261 chr2L 9357891 9357901 chr2L 9358916 9358951 5 1042 7.5 11.5 9.5 0.5 1060 chr2L 9357891 intergenic not near genes chr2L 9358421 intergenic not near genes chr2L 9358951 intergenic not near genes chr2L_5_9355001 chr2L_9355001 RAL-405 262 chr2L 9362128 9362149 chr2L 9362226 9362226 5 92 9.0 6.5 7.8 0.6 98 chr2L 9362128 intergenic not near genes chr2L 9362177 intergenic not near genes chr2L 9362226 intergenic not near genes chr2L_5_9360001 chr2L_9360001 RAL-405 263 chr2L 9364279 9364331 chr2L 9364398 9364443 7 116 0.0 1.5 0.8 3.9 164 chr2L 9364279 intergenic CR43404 + chr2L 9364361 intron CR43404 + chr2L 9364443 intron CR43404 + chr2L_7_9360001 chr2L_9360001 RAL-405 264 chr2L 9368326 9368349 chr2L 9368442 9368465 4 116 16.0 31.5 23.8 0.2 139 chr2L 9368326 3` UTR CG34181 + chr2L 9368396 3` UTR CG34181 + chr2L 9368465 intergenic CG34181 + chr2L_4_9365001 chr2L_9365001 RAL-405 265 chr2L 9380232 9380251 chr2L 9380347 9380366 5 115 15.0 19.0 17.0 0.3 134 chr2L 9380232 exon Shawl - chr2L 9380299 intron Shawl - chr2L 9380366 intron Shawl - chr2L_5_9380001 chr2L_9380001 RAL-405 266 chr2L 9385098 9385152 chr2L 9385207 9385232 14 101 11.0 12.0 11.5 1.1 134 chr2L 9385098 intron Shawl - chr2L 9385165 intron Shawl - chr2L 9385232 intron Shawl - chr2L_14_9385001 chr2L_9385001 RAL-405 267 chr2L 9387237 9387273 chr2L 9387355 9387386 9 113 7.5 6.0 6.8 1.2 149 chr2L 9387237 intron Shawl - chr2L 9387312 intron Shawl - chr2L 9387386 intron Shawl - chr2L_9_9385001 chr2L_9385001 RAL-405 268 chr2L 9393501 9393527 chr2L 9396463 9396512 jockey 9 2982 3.0 4.5 3.8 1.9 3011 chr2L 9393501 intron Shawl - chr2L 9395006 intron Shawl - chr2L 9396512 intron Shawl - chr2L_9_9395001 chr2L_9395001 RAL-405 269 chr2L 9407890 9407901 chr2L 9407989 9408003 4 101 6.5 6.5 6.5 0.5 113 chr2L 9407890 intron Shawl - chr2L 9407946 intron Shawl - chr2L 9408003 intron Shawl - chr2L_4_9405001 chr2L_9405001 RAL-405 270 chr2L 9420992 9421027 chr2L 9421137 9421191 4 159 0.0 3.0 1.5 1.6 199 chr2L 9420992 intron Mco1 + chr2L 9421092 intron Mco1 + chr2L 9421191 intron Mco1 + chr2L_4_9420001 chr2L_9420001 RAL-405 271 chr2L 9446284 9446302 chr2L 9446388 9446401 4 103 1.5 3.5 2.5 1.1 117 chr2L 9446284 intron numb + chr2L 9446342 intron numb + chr2L 9446401 intron numb + chr2L_4_9445001 chr2L_9445001 RAL-405 272 chr2L 9526830 9526875 chr2L 9526942 9526962 14 107 3.5 6.5 5.0 2.3 132 chr2L 9526830 intron Oatp30B + chr2L 9526896 intron Oatp30B + chr2L 9526962 intron Oatp30B + chr2L_14_9525001 chr2L_9525001 RAL-405 273 chr2L 9618875 9618914 chr2L 9618972 9618986 4 91 10.0 6.5 8.2 0.4 111 chr2L 9618875 intron GlcAT-S + chr2L 9618930 intron GlcAT-S + chr2L 9618986 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-405 274 chr2L 9619492 9619517 chr2L 9619833 9619874 9 352 9.5 7.0 8.2 1.0 382 chr2L 9619492 intron GlcAT-S + chr2L 9619683 intron GlcAT-S + chr2L 9619874 intron GlcAT-S + chr2L_9_9615001 chr2L_9615001 RAL-405 275 chr2L 9663239 9663271 chr2L 9663351 9663383 4 110 11.0 11.5 11.2 0.3 144 chr2L 9663239 intergenic not near genes chr2L 9663311 intergenic not near genes chr2L 9663383 intergenic not near genes chr2L_4_9660001 chr2L_9660001 RAL-405 276 chr2L 9665605 9665639 chr2L 9665746 9665765 8 137 8.0 4.0 6.0 1.1 160 chr2L 9665605 intergenic not near genes chr2L 9665685 intergenic not near genes chr2L 9665765 intergenic not near genes chr2L_8_9665001 chr2L_9665001 RAL-405 277 chr2L 9686332 9686369 chr2L 9686436 9686473 5 100 8.0 10.5 9.2 0.5 141 chr2L 9686332 intron Pka-C1 - chr2L 9686402 intron Pka-C1 - chr2L 9686473 intron Pka-C1 - chr2L_5_9685001 chr2L_9685001 RAL-405 278 chr2L 9730977 9731006 chr2L 9731080 9731083 11 100 10.5 12.5 11.5 0.9 106 chr2L 9730977 intron Nckx30C - chr2L 9731030 intron Nckx30C - chr2L 9731083 intron Nckx30C - chr2L_11_9730001 chr2L_9730001 RAL-405 279 chr2L 9733541 9733585 chr2L 9733653 9733682 6 110 11.5 11.5 11.5 0.5 141 chr2L 9733541 intron Nckx30C - chr2L 9733612 intron Nckx30C - chr2L 9733682 intron Nckx30C - chr2L_6_9730001 chr2L_9730001 RAL-405 280 chr2L 9775986 9776009 chr2L 9776078 9776111 5 96 7.5 13.0 10.2 0.4 125 chr2L 9775986 intergenic not near genes chr2L 9776048 intergenic not near genes chr2L 9776111 intergenic not near genes chr2L_5_9775001 chr2L_9775001 RAL-405 281 chr2L 9829577 9829599 chr2L 9829784 9829821 8 219 4.0 6.5 5.2 1.3 244 chr2L 9829577 intron nAChRalpha6 - chr2L 9829699 intron nAChRalpha6 - chr2L 9829821 intron nAChRalpha6 - chr2L_8_9825001 chr2L_9825001 RAL-405 282 chr2L 9883151 9883171 chr2L 9883262 9883287 5 115 20.0 23.5 21.8 0.2 136 chr2L 9883151 intron nAChRalpha6 - chr2L 9883219 intron nAChRalpha6 - chr2L 9883287 intron nAChRalpha6 - chr2L_5_9880001 chr2L_9880001 RAL-405 283 chr2L 9892484 9892528 chr2L 9892580 9892618 4 94 17.5 15.5 16.5 0.2 134 chr2L 9892484 intron mtDNA-helicase - chr2L 9892551 intron mtDNA-helicase - chr2L 9892618 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-405 284 chr2L 9973719 9973736 chr2L 9980853 9980875 HMS-Beagle 4 7134 3.5 2.0 2.8 1.1 7156 chr2L 9973719 intergenic not near genes chr2L 9977297 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-405 285 chr2L 9973737 9973756 chr2L 9980847 9980895 HMS-Beagle 8 7128 2.0 1.5 1.8 2.9 7158 chr2L 9973737 intergenic not near genes chr2L 9977316 intergenic not near genes chr2L 9980895 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-405 286 chr2L 9982197 9982227 chr2L 9982320 9982350 4 120 16.5 21.0 18.8 0.2 153 chr2L 9982197 intergenic not near genes chr2L 9982274 intergenic not near genes chr2L 9982350 intergenic not near genes chr2L_4_9980001 chr2L_9980001 RAL-405 287 chr2L 10078129 10078148 chr2L 10078286 10078326 5 159 9.5 9.5 9.5 0.5 197 chr2L 10078129 intron CG44153 - chr2L 10078228 intron CG44153 - chr2L 10078326 intron CG44153 - chr2L_5_10075001 chr2L_10075001 RAL-405 288 chr2L 10083068 10083074 chr2L 10083175 10083186 5 109 6.0 6.0 6.0 0.7 118 chr2L 10083068 intron CG44153 - chr2L 10083127 intron CG44153 - chr2L 10083186 intron CG44153 - chr2L_5_10080001 chr2L_10080001 RAL-405 289 chr2L 10105276 10105285 chr2L 10105361 10105376 4 89 4.5 3.0 3.8 0.8 100 chr2L 10105276 intron,intron CG44153 -,CG34109 + chr2L 10105326 intron,intron CG44153 -,CG34109 + chr2L 10105376 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-405 290 chr2L 10105286 10105311 chr2L 10105357 10105407 7 79 2.0 2.0 2.0 2.3 121 chr2L 10105286 intron,intron CG44153 -,CG34109 + chr2L 10105346 intron,intron CG44153 -,CG34109 + chr2L 10105407 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-405 291 chr2L 10153213 10153233 chr2L 10153284 10153331 7 84 0.5 3.5 2.0 2.3 118 chr2L 10153213 intron,exon CG44153 -,CG4839 + chr2L 10153272 intron,intron CG44153 -,CG4839 + chr2L 10153331 intron,exon CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-405 292 chr2L 10156345 10156352 chr2L 10163791 10163842 blood 5 7468 1.0 2.0 1.5 2.0 7497 chr2L 10156345 intron,3` UTR CG44153 -,CG4839 + chr2L 10160094 intron CG44153 - chr2L 10163842 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-405 293 chr2L 10176713 10176759 chr2L 10176967 10176986 5 241 29.0 23.5 26.2 0.2 273 chr2L 10176713 intron CG44153 - chr2L 10176850 intron CG44153 - chr2L 10176986 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-405 294 chr2L 10185512 10185517 chr2L 10185605 10185630 4 107 24.0 21.0 22.5 0.2 118 chr2L 10185512 intron Sur - chr2L 10185571 intron Sur - chr2L 10185630 intron Sur - chr2L_4_10185001 chr2L_10185001 RAL-405 295 chr2L 10209828 10209858 chr2L 10209925 10209929 8 93 14.5 7.0 10.8 0.7 101 chr2L 10209828 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209878 3` UTR CG5727 - chr2L 10209929 3` UTR CG5727 - chr2L_8_10205001 chr2L_10205001 RAL-405 296 chr2L 10232911 10232941 chr2L 10233009 10233014 9 94 13.0 17.0 15.0 0.6 103 chr2L 10232911 intron eEF1delta + chr2L 10232962 intron eEF1delta + chr2L 10233014 intron eEF1delta + chr2L_9_10230001 chr2L_10230001 RAL-405 297 chr2L 10276205 10276219 chr2L 10276303 10276306 6 96 22.0 24.5 23.2 0.2 101 chr2L 10276205 intron Utx - chr2L 10276256 intron Utx - chr2L 10276306 intron Utx - chr2L_6_10275001 chr2L_10275001 RAL-405 298 chr2L 10281682 10281686 chr2L 10281808 10281812 5 126 0.0 12.0 6.0 0.7 130 chr2L 10281682 intergenic CG5604 - chr2L 10281747 intergenic CG5604 - chr2L 10281812 intergenic CG5604 - chr2L_5_10280001 chr2L_10280001 RAL-405 299 chr2L 10294674 10294689 chr2L 10294770 10294795 5 102 5.5 7.5 6.5 0.7 121 chr2L 10294674 intron Hand - chr2L 10294734 intron Hand - chr2L 10294795 intron Hand - chr2L_5_10290001 chr2L_10290001 RAL-405 300 chr2L 10348363 10348409 chr2L 10348466 10348512 9 97 10.5 6.5 8.5 0.9 149 chr2L 10348363 intron CG34367 - chr2L 10348438 intron CG34367 - chr2L 10348512 intron CG34367 - chr2L_9_10345001 chr2L_10345001 RAL-405 301 chr2L 10456615 10456639 chr2L 10456715 10456739 9 99 0.0 8.0 4.0 1.8 124 chr2L 10456615 intron CG5322 - chr2L 10456677 intron CG5322 - chr2L 10456739 intron CG5322 - chr2L_9_10455001 chr2L_10455001 RAL-405 302 chr2L 10515352 10515388 chr2L 10515465 10515501 8 112 12.5 18.0 15.2 0.5 149 chr2L 10515352 intron,intron CG45083 -,Fatp - chr2L 10515426 intron,intron CG45083 -,Fatp - chr2L 10515501 intron,intron CG45083 -,Fatp - chr2L_8_10515001 chr2L_10515001 RAL-405 303 chr2L 10531592 10531645 chr2L 10531704 10531757 14 108 0.0 4.0 2.0 4.7 165 chr2L 10531592 3` UTR Lip4 + chr2L 10531674 3` UTR Lip4 + chr2L 10531757 3` UTR Lip4 + chr2L_14_10530001 chr2L_10530001 RAL-405 304 chr2L 10574553 10574591 chr2L 10574670 10574708 4 114 17.0 18.0 17.5 0.2 155 chr2L 10574553 intron Trim9 + chr2L 10574630 intron Trim9 + chr2L 10574708 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-405 305 chr2L 10580775 10580824 chr2L 10580871 10580925 6 100 5.0 5.5 5.2 1.0 150 chr2L 10580775 intron Trim9 + chr2L 10580850 intron Trim9 + chr2L 10580925 intron Trim9 + chr2L_6_10580001 chr2L_10580001 RAL-405 306 chr2L 10592820 10592873 chr2L 10600502 10600555 opus 10 7677 3.5 4.0 3.8 2.1 7735 chr2L 10592820 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600555 intron Trim9 + chr2L_10_10595001 chr2L_10595001 RAL-405 307 chr2L 10656577 10656609 chr2L 10656673 10656705 11 92 6.5 5.5 6.0 1.6 128 chr2L 10656577 intergenic not near genes chr2L 10656641 intergenic not near genes chr2L 10656705 intergenic not near genes chr2L_11_10655001 chr2L_10655001 RAL-405 308 chr2L 10683432 10683479 chr2L 10683531 10683578 13 95 3.5 0.5 2.0 4.3 146 chr2L 10683432 3` UTR CG7299 - chr2L 10683505 3` UTR CG7299 - chr2L 10683578 3` UTR CG7299 - chr2L_13_10680001 chr2L_10680001 RAL-405 309 chr2L 10688522 10688567 chr2L 10688618 10688663 9 93 10.0 11.0 10.5 0.8 141 chr2L 10688522 intergenic CG7294 - chr2L 10688592 intergenic CG7294 - chr2L 10688663 intergenic CG7294 - chr2L_9_10685001 chr2L_10685001 RAL-405 310 chr2L 10723527 10723552 chr2L 10723634 10723656 7 111 3.5 7.0 5.2 1.1 129 chr2L 10723527 intergenic not near genes chr2L 10723592 intergenic not near genes chr2L 10723656 intergenic not near genes chr2L_7_10720001 chr2L_10720001 RAL-405 311 chr2L 10762397 10762416 chr2L 10762493 10762513 6 96 7.5 4.5 6.0 0.9 116 chr2L 10762397 intron CG6495 + chr2L 10762455 intron CG6495 + chr2L 10762513 intron CG6495 + chr2L_6_10760001 chr2L_10760001 RAL-405 312 chr2L 10765036 10765076 chr2L 10765127 10765158 14 85 20.0 17.0 18.5 0.7 122 chr2L 10765036 3` UTR UbcD2 - chr2L 10765097 3` UTR UbcD2 - chr2L 10765158 3` UTR UbcD2 - chr2L_14_10765001 chr2L_10765001 RAL-405 313 chr2L 10793303 10793334 chr2L 10793400 10793431 9 96 11.0 9.0 10.0 0.8 128 chr2L 10793303 intron CG31869 - chr2L 10793367 intron CG31869 - chr2L 10793431 intron CG31869 - chr2L_9_10790001 chr2L_10790001 RAL-405 314 chr2L 10836328 10836365 chr2L 10836408 10836457 6 95 8.0 9.5 8.8 0.6 129 chr2L 10836328 intron Nos - chr2L 10836392 intron Nos - chr2L 10836457 intron Nos - chr2L_6_10835001 chr2L_10835001 RAL-405 315 chr2L 10850944 10850991 chr2L 10851044 10851088 7 101 2.0 0.0 1.0 3.5 144 chr2L 10850944 intron CG43129 + chr2L 10851016 intron CG43129 + chr2L 10851088 intron CG43129 + chr2L_7_10850001 chr2L_10850001 RAL-405 316 chr2L 10852149 10852181 chr2L 10852258 10852289 14 106 11.5 11.0 11.2 1.1 140 chr2L 10852149 intron CG43129 + chr2L 10852219 intron CG43129 + chr2L 10852289 intron CG43129 + chr2L_14_10850001 chr2L_10850001 RAL-405 317 chr2L 10946954 10946973 chr2L 10956165 10956193 roo 6 9226 1.0 1.5 1.2 2.7 9239 chr2L 10946954 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956193 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-405 318 chr2L 11055043 11055070 chr2L 11055148 11055167 6 104 15.0 12.0 13.5 0.4 124 chr2L 11055043 intron Samuel - chr2L 11055105 intron Samuel - chr2L 11055167 intron Samuel - chr2L_6_11055001 chr2L_11055001 RAL-405 319 chr2L 11076567 11076589 chr2L 11076664 11076686 9 95 10.0 6.0 8.0 1.0 119 chr2L 11076567 3` UTR AstC - chr2L 11076626 3` UTR AstC - chr2L 11076686 3` UTR AstC - chr2L_9_11075001 chr2L_11075001 RAL-405 320 chr2L 11083329 11083360 chr2L 11083410 11083447 5 88 6.5 12.0 9.2 0.5 118 chr2L 11083329 intergenic AstCC - chr2L 11083388 intergenic AstCC - chr2L 11083447 intergenic AstCC - chr2L_5_11080001 chr2L_11080001 RAL-405 321 chr2L 11169571 11169583 chr2L 11169668 11169685 6 100 24.0 28.5 26.2 0.2 114 chr2L 11169571 intron Ca-beta - chr2L 11169628 intron Ca-beta - chr2L 11169685 intron Ca-beta - chr2L_6_11165001 chr2L_11165001 RAL-405 322 chr2L 11183772 11183812 chr2L 11183870 11183927 18 108 3.5 4.5 4.0 3.6 155 chr2L 11183772 intron Ca-beta - chr2L 11183850 intron Ca-beta - chr2L 11183927 intron Ca-beta - chr2L_18_11180001 chr2L_11180001 RAL-405 323 chr2L 11188024 11188059 chr2L 11188123 11188138 8 96 8.5 15.5 12.0 0.6 114 chr2L 11188024 intron Ca-beta - chr2L 11188081 intron Ca-beta - chr2L 11188138 intron Ca-beta - chr2L_8_11185001 chr2L_11185001 RAL-405 324 chr2L 11189231 11189251 chr2L 11189348 11189368 5 117 12.0 2.0 7.0 0.6 137 chr2L 11189231 intron Ca-beta - chr2L 11189300 intron Ca-beta - chr2L 11189368 intron Ca-beta - chr2L_5_11185001 chr2L_11185001 RAL-405 325 chr2L 11224040 11224057 chr2L 11224171 11224178 6 128 11.0 5.0 8.0 0.7 138 chr2L 11224040 intron ab + chr2L 11224109 intron ab + chr2L 11224178 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-405 326 chr2L 11224059 11224081 chr2L 11224169 11224207 11 123 7.5 4.5 6.0 1.6 148 chr2L 11224059 intron ab + chr2L 11224133 intron ab + chr2L 11224207 intron ab + chr2L_11_11220001 chr2L_11220001 RAL-405 327 chr2L 11241183 11241200 chr2L 11241268 11241305 4 87 7.0 7.5 7.2 0.5 122 chr2L 11241183 intron ab + chr2L 11241244 intron ab + chr2L 11241305 intron ab + chr2L_4_11240001 chr2L_11240001 RAL-405 328 chr2L 11253331 11253361 chr2L 11253422 11253453 5 91 18.0 14.5 16.2 0.3 122 chr2L 11253331 intron ab + chr2L 11253392 intron ab + chr2L 11253453 intron ab + chr2L_5_11250001 chr2L_11250001 RAL-405 329 chr2L 11292371 11292398 chr2L 11292472 11292495 4 99 10.0 13.5 11.8 0.3 124 chr2L 11292371 intergenic not near genes chr2L 11292433 intergenic not near genes chr2L 11292495 intergenic not near genes chr2L_4_11290001 chr2L_11290001 RAL-405 330 chr2L 11339725 11339941 chr2L 11339816 11339999 8 76 6.5 4.5 5.5 1.2 274 chr2L 11339725 intergenic not near genes chr2L 11339862 intergenic not near genes chr2L 11339999 intergenic not near genes chr2L_8_11335001 chr2L_11335001 RAL-405 331 chr2L 11404773 11404802 chr2L 11404869 11404898 5 96 17.0 18.0 17.5 0.3 125 chr2L 11404773 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404898 intergenic not near genes chr2L_5_11400001 chr2L_11400001 RAL-405 332 chr2L 11413305 11413314 chr2L 11413424 11413458 8 137 6.0 3.5 4.8 1.4 153 chr2L 11413305 intergenic not near genes chr2L 11413382 intergenic not near genes chr2L 11413458 intergenic not near genes chr2L_8_11410001 chr2L_11410001 RAL-405 333 chr2L 11418657 11418677 chr2L 11418740 11418776 8 89 3.0 2.5 2.8 2.1 119 chr2L 11418657 intergenic not near genes chr2L 11418716 intergenic not near genes chr2L 11418776 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-405 334 chr2L 11450106 11450146 chr2L 11450209 11450248 6 105 9.0 9.0 9.0 0.6 142 chr2L 11450106 intergenic not near genes chr2L 11450177 intergenic not near genes chr2L 11450248 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-405 335 chr2L 11485667 11485690 chr2L 11485763 11485780 11 93 5.0 8.0 6.5 1.5 113 chr2L 11485667 exon,5` UTR CG43355 +,sala + chr2L 11485724 exon,5` UTR CG43355 +,sala + chr2L 11485780 intron,intron CG43355 +,sala + chr2L_11_11485001 chr2L_11485001 RAL-405 336 chr2L 11485695 11485698 chr2L 11485756 11485794 4 86 4.5 5.0 4.8 0.7 99 chr2L 11485695 exon,5` UTR CG43355 +,sala + chr2L 11485744 3` UTR,5` UTR CG43355 +,sala + chr2L 11485794 intron,intron CG43355 +,sala + chr2L_4_11485001 chr2L_11485001 RAL-405 337 chr2L 11496617 11496648 chr2L 11496715 11496746 5 96 2.0 3.5 2.8 1.3 129 chr2L 11496617 intergenic CG6488 - chr2L 11496682 intergenic CG6488 - chr2L 11496746 intergenic CG6488 - chr2L_5_11495001 chr2L_11495001 RAL-405 338 chr2L 11536705 11536736 chr2L 11536801 11536834 5 92 11.5 17.5 14.5 0.3 129 chr2L 11536705 exon CG43438 + chr2L 11536770 3` UTR CG43438 + chr2L 11536834 3` UTR CG43438 + chr2L_5_11535001 chr2L_11535001 RAL-405 339 chr2L 11540568 11540616 chr2L 11547988 11548038 Tabor 10 7416 7.0 8.5 7.8 1.1 7470 chr2L 11540568 intergenic not near genes chr2L 11544303 intergenic not near genes chr2L 11548038 intergenic not near genes chr2L_10_11540001 chr2L_11540001 RAL-405 340 chr2L 11563639 11563661 chr2L 11568847 11568857 copia 6 5212 2.5 8.0 5.2 1.0 5218 chr2L 11563639 intergenic not near genes chr2L 11566248 intergenic not near genes chr2L 11568857 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-405 341 chr2L 11698563 11698590 chr2L 11698676 11698703 4 113 21.0 19.0 20.0 0.2 140 chr2L 11698563 intergenic not near genes chr2L 11698633 intergenic not near genes chr2L 11698703 intergenic not near genes chr2L_4_11695001 chr2L_11695001 RAL-405 342 chr2L 11713486 11713537 chr2L 11720974 11721025 blood 8 7481 5.5 2.5 4.0 1.6 7539 chr2L 11713486 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721025 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-405 343 chr2L 11752844 11752892 chr2L 11753154 11753202 11 306 1.0 6.0 3.5 2.4 358 chr2L 11752844 intergenic CG42470 - chr2L 11753023 3` UTR CG42470 - chr2L 11753202 exon CG42470 - chr2L_11_11750001 chr2L_11750001 RAL-405 344 chr2L 11824921 11824940 chr2L 11825029 11825033 4 104 23.0 15.0 19.0 0.2 112 chr2L 11824921 intron Pde1c - chr2L 11824977 intron Pde1c - chr2L 11825033 intron Pde1c - chr2L_4_11820001 chr2L_11820001 RAL-405 345 chr2L 11825688 11825704 chr2L 11825787 11825793 4 95 6.0 0.0 3.0 1.0 105 chr2L 11825688 intron Pde1c - chr2L 11825740 intron Pde1c - chr2L 11825793 intron Pde1c - chr2L_4_11825001 chr2L_11825001 RAL-405 346 chr2L 11828427 11828464 chr2L 11828513 11828550 13 90 1.5 6.0 3.8 2.7 123 chr2L 11828427 intron,intron Pde1c -,esc - chr2L 11828488 intron,intron Pde1c -,esc - chr2L 11828550 intron,intron Pde1c -,esc - chr2L_13_11825001 chr2L_11825001 RAL-405 347 chr2L 11841330 11841355 chr2L 11841447 11841453 6 106 11.5 1.5 6.5 0.8 123 chr2L 11841330 intron Pde1c - chr2L 11841392 intron Pde1c - chr2L 11841453 intron Pde1c - chr2L_6_11840001 chr2L_11840001 RAL-405 348 chr2L 11841362 11841395 chr2L 11841446 11841467 5 89 3.5 1.5 2.5 1.4 105 chr2L 11841362 intron Pde1c - chr2L 11841414 intron Pde1c - chr2L 11841467 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-405 349 chr2L 11854027 11854043 chr2L 11854124 11854140 6 95 1.0 0.0 0.5 4.0 113 chr2L 11854027 intron Pde1c - chr2L 11854084 intron Pde1c - chr2L 11854140 intron Pde1c - chr2L_6_11850001 chr2L_11850001 RAL-405 350 chr2L 11881637 11881674 chr2L 11881722 11881745 5 79 8.5 9.0 8.8 0.5 108 chr2L 11881637 intron Pde1c - chr2L 11881691 intron Pde1c - chr2L 11881745 intron Pde1c - chr2L_5_11880001 chr2L_11880001 RAL-405 351 chr2L 11892525 11892550 chr2L 11892634 11892659 4 107 22.0 19.5 20.8 0.2 134 chr2L 11892525 intron Pde1c - chr2L 11892592 intron Pde1c - chr2L 11892659 intron Pde1c - chr2L_4_11890001 chr2L_11890001 RAL-405 352 chr2L 12046492 12046502 chr2L 12046636 12046646 4 144 17.0 10.5 13.8 0.3 154 chr2L 12046492 5` UTR CR44589 + chr2L 12046569 5` UTR CR44589 + chr2L 12046646 5` UTR CR44589 + chr2L_4_12045001 chr2L_12045001 RAL-405 353 chr2L 12067318 12067326 chr2L 12074384 12074398 297 4 7070 14.0 4.5 9.2 0.4 7080 chr2L 12067318 intergenic not near genes chr2L 12070858 intergenic not near genes chr2L 12074398 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-405 354 chr2L 12067331 12067358 chr2L 12074382 12074411 297 13 7062 5.0 4.0 4.5 2.4 7080 chr2L 12067331 intergenic not near genes chr2L 12070871 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_13_12070001 chr2L_12070001 RAL-405 355 chr2L 12080681 12080693 chr2L 12080807 12080809 4 126 3.5 2.0 2.8 1.1 128 chr2L 12080681 intergenic CR44591 +,CR44590 - chr2L 12080745 intergenic CR44590 -,CR44591 + chr2L 12080809 3` UTR CR44590 - chr2L_4_12080001 chr2L_12080001 RAL-405 356 chr2L 12080702 12080704 chr2L 12080801 12080825 4 119 3.5 1.5 2.5 1.1 123 chr2L 12080702 intergenic CR44590 -,CR44591 + chr2L 12080764 intergenic CR44590 -,CR44591 + chr2L 12080825 3` UTR CR44590 - chr2L_4_12080001 chr2L_12080001 RAL-405 357 chr2L 12131461 12131495 chr2L 12131570 12131606 13 115 16.5 19.0 17.8 0.7 145 chr2L 12131461 intron rho-6 - chr2L 12131534 intron rho-6 - chr2L 12131606 intron rho-6 - chr2L_13_12130001 chr2L_12130001 RAL-405 358 chr2L 12132704 12132749 chr2L 12132810 12132855 14 103 2.0 1.0 1.5 5.6 151 chr2L 12132704 intron rho-6 - chr2L 12132780 intron rho-6 - chr2L 12132855 intron rho-6 - chr2L_14_12130001 chr2L_12130001 RAL-405 359 chr2L 12153919 12153953 chr2L 12154011 12154049 5 96 10.5 14.5 12.5 0.4 130 chr2L 12153919 exon CG31760 + chr2L 12153984 intron CG31760 + chr2L 12154049 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-405 360 chr2L 12179775 12179791 chr2L 12179860 12179897 4 101 7.0 8.0 7.5 0.5 122 chr2L 12179775 intron aret + chr2L 12179836 intron aret + chr2L 12179897 intron aret + chr2L_4_12175001 chr2L_12175001 RAL-405 361 chr2L 12229579 12229608 chr2L 12229659 12229705 5 89 14.0 23.5 18.8 0.3 126 chr2L 12229579 intron aret + chr2L 12229642 intron aret + chr2L 12229705 intron aret + chr2L_5_12225001 chr2L_12225001 RAL-405 362 chr2L 12239994 12240028 chr2L 12240095 12240126 6 100 20.5 28.5 24.5 0.2 132 chr2L 12239994 intron aret + chr2L 12240060 intron aret + chr2L 12240126 intron aret + chr2L_6_12240001 chr2L_12240001 RAL-405 363 chr2L 12266101 12266112 chr2L 12266203 12266214 4 102 15.5 8.5 12.0 0.3 113 chr2L 12266101 intron aret + chr2L 12266158 intron aret + chr2L 12266214 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-405 364 chr2L 12272140 12272192 chr2L 12272238 12272288 11 96 4.5 6.5 5.5 1.7 148 chr2L 12272140 intron aret + chr2L 12272214 intron aret + chr2L 12272288 intron aret + chr2L_11_12270001 chr2L_12270001 RAL-405 365 chr2L 12278908 12278954 chr2L 12279008 12279054 4 100 23.5 22.5 23.0 0.2 146 chr2L 12278908 exon aret + chr2L 12278981 intron aret + chr2L 12279054 intron aret + chr2L_4_12275001 chr2L_12275001 RAL-405 366 chr2L 12294245 12294277 chr2L 12294336 12294379 4 93 18.5 18.5 18.5 0.2 134 chr2L 12294245 intron aret + chr2L 12294312 intron aret + chr2L 12294379 intron aret + chr2L_4_12290001 chr2L_12290001 RAL-405 367 chr2L 12373085 12373085 chr2L 15974279 15974279 4 3601194 19.5 25.5 22.5 0.2 3601194 chr2L 12373085 intron bru-2 + chr2L 14173682 intron CG43333 - chr2L 15974279 intergenic not near genes chr2L_4_14170001 chr2L_14170001 RAL-405 368 chr2L 12377349 12377362 chr2L 12377426 12377469 5 99 7.5 9.0 8.2 0.5 120 chr2L 12377349 intron bru-2 + chr2L 12377409 intron bru-2 + chr2L 12377469 intron bru-2 + chr2L_5_12375001 chr2L_12375001 RAL-405 369 chr2L 12394971 12394998 chr2L 12395058 12395130 7 126 11.0 9.0 10.0 0.6 159 chr2L 12394971 intron bru-2 + chr2L 12395050 intron bru-2 + chr2L 12395130 intron bru-2 + chr2L_7_12395001 chr2L_12395001 RAL-405 370 chr2L 12418853 12418898 chr2L 12418968 12419013 4 115 21.0 19.5 20.2 0.2 160 chr2L 12418853 intron vir-1 - chr2L 12418933 intron vir-1 - chr2L 12419013 intron vir-1 - chr2L_4_12415001 chr2L_12415001 RAL-405 371 chr2L 12434001 12434036 chr2L 12434081 12434132 9 92 10.5 10.5 10.5 0.8 131 chr2L 12434001 5` UTR SC35 - chr2L 12434066 intergenic SC35 -,Elf + chr2L 12434132 intergenic SC35 -,Elf + chr2L_9_12430001 chr2L_12430001 RAL-405 372 chr2L 12487879 12487901 chr2L 12487971 12488002 4 98 11.0 14.0 12.5 0.3 123 chr2L 12487879 intron bun - chr2L 12487940 intron bun - chr2L 12488002 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-405 373 chr2L 12526853 12526876 chr2L 12527097 12527100 6 239 4.0 13.0 8.5 0.6 247 chr2L 12526853 intron bun - chr2L 12526976 intron bun - chr2L 12527100 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-405 374 chr2L 12529219 12529256 chr2L 12529391 12529408 6 161 10.0 9.5 9.8 0.6 189 chr2L 12529219 intron bun - chr2L 12529314 intron bun - chr2L 12529408 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-405 375 chr2L 12551014 12551046 chr2L 12551110 12551142 4 96 19.0 17.5 18.2 0.2 128 chr2L 12551014 intergenic not near genes chr2L 12551078 intergenic not near genes chr2L 12551142 intergenic not near genes chr2L_4_12550001 chr2L_12550001 RAL-405 376 chr2L 12558334 12558349 chr2L 12565447 12565480 HMS-Beagle 7 7134 4.5 4.0 4.2 1.3 7146 chr2L 12558334 intergenic not near genes chr2L 12561907 intergenic not near genes chr2L 12565480 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-405 377 chr2L 12659684 12659873 chr2L 12659810 12659976 13 106 8.5 21.0 14.8 0.8 292 chr2L 12659684 intron pdm2 + chr2L 12659830 intron pdm2 + chr2L 12659976 intron pdm2 + chr2L_13_12655001 chr2L_12655001 RAL-405 378 chr2L 12677709 12677729 chr2L 12677814 12677834 6 105 23.5 26.5 25.0 0.2 125 chr2L 12677709 intron pdm2 + chr2L 12677772 intron pdm2 + chr2L 12677834 intron pdm2 + chr2L_6_12675001 chr2L_12675001 RAL-405 379 chr2L 12731045 12731085 chr2L 12735826 12735847 F-element 18 4780 3.5 5.5 4.5 3.3 4802 chr2L 12731045 intron MRP + chr2L 12733446 intron MRP + chr2L 12735847 intron MRP + chr2L_18_12730001 chr2L_12730001 RAL-405 380 chr2L 12736650 12736696 chr2L 12736746 12736790 5 96 8.5 8.5 8.5 0.5 140 chr2L 12736650 intron MRP + chr2L 12736720 intron MRP + chr2L 12736790 intron MRP + chr2L_5_12735001 chr2L_12735001 RAL-405 381 chr2L 12739163 12739201 chr2L 12743959 12743967 Doc 9 4796 0.5 3.5 2.0 3.0 4804 chr2L 12739163 exon MRP + chr2L 12741565 intron MRP + chr2L 12743967 intron MRP + chr2L_9_12740001 chr2L_12740001 RAL-405 382 chr2L 12751299 12751335 chr2L 12751396 12751438 10 100 4.0 7.5 5.8 1.5 139 chr2L 12751299 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751438 intergenic not near genes chr2L_10_12750001 chr2L_12750001 RAL-405 383 chr2L 12763809 12763870 chr2L 12764041 12764080 BS 6 224 1.0 1.5 1.2 2.7 271 chr2L 12763809 intergenic not near genes chr2L 12763944 intergenic not near genes chr2L 12764080 intergenic not near genes chr2L_6_12760001 chr2L_12760001 RAL-405 384 chr2L 12766756 12766770 chr2L 12766854 12766868 5 97 7.0 8.0 7.5 0.6 112 chr2L 12766756 intergenic not near genes chr2L 12766812 intergenic not near genes chr2L 12766868 intergenic not near genes chr2L_5_12765001 chr2L_12765001 RAL-405 385 chr2L 12791595 12791633 chr2L 12795284 12795309 F-element 13 3687 2.0 10.0 6.0 1.9 3714 chr2L 12791595 intergenic not near genes chr2L 12793452 intergenic not near genes chr2L 12795309 intergenic not near genes chr2L_13_12790001 chr2L_12790001 RAL-405 386 chr2L 12833028 12833078 chr2L 12833130 12833176 16 97 15.0 16.5 15.8 1.0 148 chr2L 12833028 intergenic not near genes chr2L 12833102 intergenic not near genes chr2L 12833176 intergenic not near genes chr2L_16_12830001 chr2L_12830001 RAL-405 387 chr2L 12855299 12855327 chr2L 12855381 12855432 4 99 3.5 5.0 4.2 0.8 133 chr2L 12855299 intergenic not near genes chr2L 12855366 intergenic not near genes chr2L 12855432 intergenic not near genes chr2L_4_12855001 chr2L_12855001 RAL-405 388 chr2L 12861681 12861713 chr2L 12863168 12863200 hobo 7 1485 4.5 2.5 3.5 1.6 1519 chr2L 12861681 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863200 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-405 389 chr2L 12933834 12933868 chr2L 12941320 12941355 blood 6 7487 6.5 1.5 4.0 1.2 7521 chr2L 12933834 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941355 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-405 390 chr2L 13036228 13036275 chr2L 13036490 13036517 X-element 6 258 7.5 16.0 11.8 0.5 289 chr2L 13036228 intron CG9932 - chr2L 13036372 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-405 391 chr2L 13082365 13082391 chr2L 13082484 13082516 4 124 6.5 5.5 6.0 0.6 151 chr2L 13082365 intergenic not near genes chr2L 13082440 intergenic not near genes chr2L 13082516 intergenic not near genes chr2L_4_13080001 chr2L_13080001 RAL-405 392 chr2L 13110195 13110217 chr2L 13110373 13110387 5 174 23.0 15.0 19.0 0.2 192 chr2L 13110195 intergenic not near genes chr2L 13110291 intergenic not near genes chr2L 13110387 intergenic not near genes chr2L_5_13110001 chr2L_13110001 RAL-405 393 chr2L 13154103 13154124 chr2L 13154191 13154191 6 87 7.5 0.0 3.8 1.2 88 chr2L 13154103 intergenic not near genes chr2L 13154147 intergenic not near genes chr2L 13154191 intergenic not near genes chr2L_6_13150001 chr2L_13150001 RAL-405 394 chr2L 13231879 13231913 chr2L 13231994 13231999 8 123 24.0 25.0 24.5 0.3 120 chr2L 13231879 intergenic Prosalpha6T + chr2L 13231939 intergenic Prosalpha6T + chr2L 13231999 intergenic Prosalpha6T + chr2L_8_13230001 chr2L_13230001 RAL-405 395 chr2L 13245398 13245423 chr2L 13245506 13245519 5 107 15.0 16.5 15.8 0.3 121 chr2L 13245398 intergenic snRNA:U5:34A + chr2L 13245458 intergenic snRNA:U5:34A + chr2L 13245519 intergenic not near genes chr2L_5_13245001 chr2L_13245001 RAL-405 396 chr2L 13266397 13266408 chr2L 13266474 13266509 4 79 10.5 11.5 11.0 0.3 112 chr2L 13266397 intron CG44085 + chr2L 13266453 intron CG44085 + chr2L 13266509 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-405 397 chr2L 13283827 13283851 chr2L 13283948 13283972 7 121 21.5 17.0 19.2 0.3 145 chr2L 13283827 3` UTR CG44085 + chr2L 13283900 3` UTR CG44085 + chr2L 13283972 3` UTR,3` UTR CG44085 +,Drep-4 - chr2L_7_13280001 chr2L_13280001 RAL-405 398 chr2L 13374310 13374339 chr2L 13374417 13374445 4 99 6.5 4.5 5.5 0.6 135 chr2L 13374310 5` UTR CG6565 + chr2L 13374378 5` UTR CG6565 + chr2L 13374445 5` UTR CG6565 + chr2L_4_13370001 chr2L_13370001 RAL-405 399 chr2L 13398708 13398751 chr2L 13398803 13398842 11 95 6.5 5.0 5.8 1.6 134 chr2L 13398708 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398775 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398842 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_11_13395001 chr2L_13395001 RAL-405 400 chr2L 13405637 13405676 chr2L 13410454 13410493 Doc 10 4815 2.0 7.5 4.8 1.7 4856 chr2L 13405637 exon CG7110 + chr2L 13408065 intron CG7110 + chr2L 13410493 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-405 401 chr2L 13412318 13412351 chr2L 13412465 13412498 8 141 25.0 22.5 23.8 0.3 180 chr2L 13412318 intergenic CG16848 + chr2L 13412408 intergenic CG16848 + chr2L 13412498 intergenic CG16848 + chr2L_8_13410001 chr2L_13410001 RAL-405 402 chr2L 13422342 13422503 chr2L 13422439 13422602 15 92 8.0 2.0 5.0 2.5 260 chr2L 13422342 intron CG42784 + chr2L 13422472 intron CG42784 + chr2L 13422602 intron CG42784 + chr2L_15_13420001 chr2L_13420001 RAL-405 403 chr2L 13449445 13449491 chr2L 13456901 13456947 Quasimodo 14 7454 6.5 7.0 6.8 1.8 7502 chr2L 13449445 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456947 intron CG42784 + chr2L_14_13450001 chr2L_13450001 RAL-405 404 chr2L 13481443 13481474 chr2L 13482070 13482081 jockey 8 621 6.0 5.5 5.8 1.2 638 chr2L 13481443 intron CG42784 + chr2L 13481762 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-405 405 chr2L 13560392 13560417 chr2L 13565233 13565258 F-element 5 4838 10.5 7.5 9.0 0.5 4866 chr2L 13560392 intron kuz + chr2L 13562825 intron kuz + chr2L 13565258 intron kuz + chr2L_5_13560001 chr2L_13560001 RAL-405 406 chr2L 13622130 13622166 chr2L 13622233 13622270 9 103 6.5 1.5 4.0 1.8 140 chr2L 13622130 intron kuz + chr2L 13622200 intron kuz + chr2L 13622270 intron kuz + chr2L_9_13620001 chr2L_13620001 RAL-405 407 chr2L 13629548 13629599 chr2L 13629644 13629684 4 91 18.5 23.0 20.8 0.2 136 chr2L 13629548 intron kuz + chr2L 13629616 intron kuz + chr2L 13629684 intron kuz + chr2L_4_13625001 chr2L_13625001 RAL-405 408 chr2L 13701867 13701912 chr2L 13701967 13702012 16 96 12.5 13.5 13.0 1.1 145 chr2L 13701867 intron CG31814 - chr2L 13701940 intron CG31814 - chr2L 13702012 intron CG31814 - chr2L_16_13700001 chr2L_13700001 RAL-405 409 chr2L 13713536 13713572 chr2L 13713632 13713649 12 92 7.5 2.0 4.8 2.1 113 chr2L 13713536 intron CG31814 - chr2L 13713592 intron CG31814 - chr2L 13713649 intron CG31814 - chr2L_12_13710001 chr2L_13710001 RAL-405 410 chr2L 13749194 13749210 chr2L 13749297 13749313 4 102 0.0 0.0 0.0 4.0 119 chr2L 13749194 intron,intron CR44846 +,TM9SF4 + chr2L 13749254 intron,intron CR44846 +,TM9SF4 + chr2L 13749313 intron,intron CR44846 +,TM9SF4 + chr2L_4_13745001 chr2L_13745001 RAL-405 411 chr2L 13761787 13761833 chr2L 13762918 13762937 Doc 5 1119 8.0 6.0 7.0 0.6 1150 chr2L 13761787 intron TM9SF4 + chr2L 13762362 intron TM9SF4 + chr2L 13762937 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-405 412 chr2L 13842110 13842158 chr2L 13842214 13842262 10 101 11.5 10.0 10.8 0.8 152 chr2L 13842110 intron CenG1A + chr2L 13842186 intron CenG1A + chr2L 13842262 intron CenG1A + chr2L_10_13840001 chr2L_13840001 RAL-405 413 chr2L 13853069 13853108 chr2L 13862239 13862271 roo 11 9163 4.0 8.0 6.0 1.6 9202 chr2L 13853069 intron CenG1A + chr2L 13857670 intron CenG1A + chr2L 13862271 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-405 414 chr2L 13944409 13944433 chr2L 13944539 13944568 11 135 3.5 11.0 7.2 1.3 159 chr2L 13944409 intron Ance-3 + chr2L 13944488 intron Ance-3 + chr2L 13944568 intron Ance-3 + chr2L_11_13940001 chr2L_13940001 RAL-405 415 chr2L 13958824 13958849 chr2L 13958922 13958947 6 97 18.0 18.0 18.0 0.3 123 chr2L 13958824 intron NimA + chr2L 13958886 intron NimA + chr2L 13958947 intron NimA + chr2L_6_13955001 chr2L_13955001 RAL-405 416 chr2L 13987206 13987237 chr2L 13987298 13987325 9 95 9.5 8.5 9.0 0.9 119 chr2L 13987206 intron rk - chr2L 13987266 intron rk - chr2L 13987325 intron rk - chr2L_9_13985001 chr2L_13985001 RAL-405 417 chr2L 14056063 14056103 chr2L 14056262 14056267 4 186 5.5 6.5 6.0 0.6 204 chr2L 14056063 intron nAChRalpha5 + chr2L 14056165 intron nAChRalpha5 + chr2L 14056267 intron nAChRalpha5 + chr2L_4_14055001 chr2L_14055001 RAL-405 418 chr2L 14099098 14099134 chr2L 14099204 14099239 4 106 17.0 16.0 16.5 0.2 141 chr2L 14099098 intergenic not near genes chr2L 14099168 intergenic not near genes chr2L 14099239 intergenic not near genes chr2L_4_14095001 chr2L_14095001 RAL-405 419 chr2L 14102838 14102854 chr2L 14102939 14102955 5 101 11.0 9.0 10.0 0.5 117 chr2L 14102838 intergenic not near genes chr2L 14102896 intergenic not near genes chr2L 14102955 intergenic not near genes chr2L_5_14100001 chr2L_14100001 RAL-405 420 chr2L 14148665 14148689 chr2L 14148788 14148827 7 136 10.5 14.0 12.2 0.5 162 chr2L 14148665 intron CG17341 + chr2L 14148746 intron CG17341 + chr2L 14148827 intron CG17341 + chr2L_7_14145001 chr2L_14145001 RAL-405 421 chr2L 14180043 14180089 chr2L 14180139 14180170 15 92 8.0 5.5 6.8 1.9 127 chr2L 14180043 intron CG43333 - chr2L 14180106 intron CG43333 - chr2L 14180170 intron CG43333 - chr2L_15_14180001 chr2L_14180001 RAL-405 422 chr2L 14246284 14246297 chr2L 14246382 14246395 9 97 6.5 11.5 9.0 0.9 111 chr2L 14246284 intergenic not near genes chr2L 14246340 intergenic not near genes chr2L 14246395 intergenic not near genes chr2L_9_14245001 chr2L_14245001 RAL-405 423 chr2L 14246299 14246315 chr2L 14246366 14246378 4 80 4.5 10.0 7.2 0.5 79 chr2L 14246299 intergenic not near genes chr2L 14246338 intergenic not near genes chr2L 14246378 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-405 424 chr2L 14268590 14268614 chr2L 14268685 14268711 5 91 15.0 15.5 15.2 0.3 121 chr2L 14268590 intron wb + chr2L 14268650 intron wb + chr2L 14268711 intron wb + chr2L_5_14265001 chr2L_14265001 RAL-405 425 chr2L 14333803 14333851 chr2L 14333902 14333909 9 86 8.0 11.0 9.5 0.9 106 chr2L 14333803 3` UTR ms(2)34Fe + chr2L 14333856 3` UTR ms(2)34Fe + chr2L 14333909 intergenic ms(2)34Fe +,CG33090 + chr2L_9_14330001 chr2L_14330001 RAL-405 426 chr2L 14503414 14503425 chr2L 14503513 14503524 6 98 1.0 0.5 0.8 3.3 110 chr2L 14503414 intergenic not near genes chr2L 14503469 intergenic not near genes chr2L 14503524 intergenic not near genes chr2L_6_14500001 chr2L_14500001 RAL-405 427 chr2L 14524603 14524645 chr2L 14525121 14525163 5 514 7.5 23.5 15.5 0.3 560 chr2L 14524603 intron CG33648 + chr2L 14524883 intron CG33648 + chr2L 14525163 exon CG33648 + chr2L_5_14520001 chr2L_14520001 RAL-405 428 chr2L 14532203 14532228 chr2L 14532277 14532292 4 83 6.0 9.0 7.5 0.5 89 chr2L 14532203 intergenic CR44852 - chr2L 14532248 intergenic CR44852 - chr2L 14532292 intergenic CR44852 - chr2L_4_14530001 chr2L_14530001 RAL-405 429 chr2L 14575506 14575546 chr2L 14575767 14575808 4 260 1.0 8.0 4.5 0.7 302 chr2L 14575506 intergenic not near genes chr2L 14575657 intergenic not near genes chr2L 14575808 intergenic not near genes chr2L_4_14575001 chr2L_14575001 RAL-405 430 chr2L 14588370 14588416 chr2L 14588544 14588578 18 170 8.0 4.0 6.0 2.6 208 chr2L 14588370 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588578 intergenic CG42680 - chr2L_18_14585001 chr2L_14585001 RAL-405 431 chr2L 14601956 14602003 chr2L 14602060 14602107 13 98 3.5 2.5 3.0 3.2 151 chr2L 14601956 exon osp - chr2L 14602032 intron osp - chr2L 14602107 intron osp - chr2L_13_14600001 chr2L_14600001 RAL-405 432 chr2L 14614077 14614086 chr2L 14614280 14614286 4 203 12.5 14.0 13.2 0.3 209 chr2L 14614077 intron osp - chr2L 14614182 intron osp - chr2L 14614286 intron osp - chr2L_4_14610001 chr2L_14610001 RAL-405 433 chr2L 14642557 14642600 chr2L 14651735 14651783 roo 14 9179 3.5 5.0 4.2 2.7 9226 chr2L 14642557 intron osp - chr2L 14647170 intron osp - chr2L 14651783 intron osp - chr2L_14_14645001 chr2L_14645001 RAL-405 434 chr2L 14677513 14677540 chr2L 14678633 14678660 12 1120 13.5 5.0 9.2 1.2 1147 chr2L 14677513 intron osp - chr2L 14678086 intron osp - chr2L 14678660 intron osp - chr2L_12_14675001 chr2L_14675001 RAL-405 435 chr2L 14694236 14694288 chr2L 14694380 14694432 12 142 9.0 6.5 7.8 1.4 196 chr2L 14694236 intergenic not near genes chr2L 14694334 intergenic not near genes chr2L 14694432 intergenic not near genes chr2L_12_14690001 chr2L_14690001 RAL-405 436 chr2L 14707194 14707227 chr2L 14707333 14707366 9 136 9.5 4.0 6.8 1.2 172 chr2L 14707194 intergenic not near genes chr2L 14707280 intergenic not near genes chr2L 14707366 intergenic not near genes chr2L_9_14705001 chr2L_14705001 RAL-405 437 chr2L 14707230 14707237 chr2L 14707328 14707376 5 129 5.5 3.5 4.5 0.9 146 chr2L 14707230 intergenic not near genes chr2L 14707303 intergenic not near genes chr2L 14707376 intergenic not near genes chr2L_5_14705001 chr2L_14705001 RAL-405 438 chr2L 14707580 14707618 chr2L 14708590 14708614 11 1018 23.0 10.0 16.5 0.6 1034 chr2L 14707580 intergenic not near genes chr2L 14708097 intergenic not near genes chr2L 14708614 intergenic not near genes chr2L_11_14705001 chr2L_14705001 RAL-405 439 chr2L 14706735 14706760 chr2L 14708977 14709027 13 2247 37.5 37.5 37.5 0.3 2292 chr2L 14706735 intergenic not near genes chr2L 14707881 intergenic not near genes chr2L 14709027 intergenic not near genes chr2L_13_14705001 chr2L_14705001 RAL-405 440 chr2L 14769876 14769915 chr2L 14769973 14770017 6 99 16.0 16.0 16.0 0.4 141 chr2L 14769876 intergenic not near genes chr2L 14769946 intergenic not near genes chr2L 14770017 intergenic not near genes chr2L_6_14765001 chr2L_14765001 RAL-405 441 chr2L 14803883 14803911 chr2L 14809081 14809134 copia 9 5213 5.5 7.5 6.5 1.2 5251 chr2L 14803883 intergenic not near genes chr2L 14806508 intergenic not near genes chr2L 14809134 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-405 442 chr2L 14840979 14841007 chr2L 14841086 14841114 7 106 2.0 3.5 2.8 1.8 135 chr2L 14840979 3` UTR CR43805 - chr2L 14841046 3` UTR CR43805 - chr2L 14841114 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-405 443 chr2L 14887670 14887698 chr2L 14887768 14887796 6 95 4.0 4.5 4.2 1.2 126 chr2L 14887670 intergenic not near genes chr2L 14887733 intergenic not near genes chr2L 14887796 intergenic not near genes chr2L_6_14885001 chr2L_14885001 RAL-405 444 chr2L 14889939 14889972 chr2L 14890379 14890417 jockey 6 444 2.5 0.5 1.5 2.4 478 chr2L 14889939 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890417 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-405 445 chr2L 14923088 14923107 chr2L 14923188 14923207 5 100 9.5 11.5 10.5 0.4 119 chr2L 14923088 intron CG42313 - chr2L 14923148 intron CG42313 - chr2L 14923207 intron CG42313 - chr2L_5_14920001 chr2L_14920001 RAL-405 446 chr2L 14923109 14923128 chr2L 14923184 14923228 6 91 10.5 12.5 11.5 0.5 119 chr2L 14923109 intron CG42313 - chr2L 14923168 intron CG42313 - chr2L 14923228 intron CG42313 - chr2L_6_14920001 chr2L_14920001 RAL-405 447 chr2L 14942161 14942212 chr2L 14942263 14942283 5 94 7.0 12.5 9.8 0.5 122 chr2L 14942161 intron CG42313 - chr2L 14942222 intron CG42313 - chr2L 14942283 intron CG42313 - chr2L_5_14940001 chr2L_14940001 RAL-405 448 chr2L 14984385 14984398 chr2L 14991983 14992020 opus 5 7612 3.0 2.0 2.5 1.4 7635 chr2L 14984385 intron mol - chr2L 14988202 intron mol - chr2L 14992020 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-405 449 chr2L 15003542 15003571 chr2L 15003646 15003668 8 102 11.0 14.0 12.5 0.6 126 chr2L 15003542 intergenic not near genes chr2L 15003605 intergenic not near genes chr2L 15003668 intergenic not near genes chr2L_8_15000001 chr2L_15000001 RAL-405 450 chr2L 15044703 15044741 chr2L 15044799 15044816 7 91 15.0 12.5 13.8 0.5 113 chr2L 15044703 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044816 intergenic ck - chr2L_7_15040001 chr2L_15040001 RAL-405 451 chr2L 15078083 15078100 chr2L 15078156 15078208 9 98 6.0 2.5 4.2 1.7 125 chr2L 15078083 intron CG15270 + chr2L 15078146 intron CG15270 + chr2L 15078208 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-405 452 chr2L 15078611 15078657 chr2L 15078750 15078788 9 143 7.5 14.0 10.8 0.8 177 chr2L 15078611 intron CG15270 + chr2L 15078700 intron CG15270 + chr2L 15078788 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-405 453 chr2L 15138756 15138799 chr2L 15138858 15138906 6 96 0.0 5.5 2.8 1.6 150 chr2L 15138756 intergenic not near genes chr2L 15138831 intergenic not near genes chr2L 15138906 intergenic not near genes chr2L_6_15135001 chr2L_15135001 RAL-405 454 chr2L 15161231 15161258 chr2L 15161387 15161388 6 152 15.0 7.0 11.0 0.5 157 chr2L 15161231 intergenic CR44770 + chr2L 15161310 intergenic CR44770 + chr2L 15161388 intergenic CR44770 +,CG4168 - chr2L_6_15160001 chr2L_15160001 RAL-405 455 chr2L 15186237 15186272 chr2L 15186382 15186413 9 143 19.0 15.0 17.0 0.5 176 chr2L 15186237 intron CG4168 - chr2L 15186325 intron CG4168 - chr2L 15186413 intron CG4168 - chr2L_9_15185001 chr2L_15185001 RAL-405 456 chr2L 15192214 15192244 chr2L 15192358 15192388 4 141 19.5 16.0 17.8 0.2 174 chr2L 15192214 intron CG4168 - chr2L 15192301 intron CG4168 - chr2L 15192388 intron CG4168 - chr2L_4_15190001 chr2L_15190001 RAL-405 457 chr2L 15223866 15223891 chr2L 15223996 15224021 6 130 7.0 12.0 9.5 0.6 155 chr2L 15223866 intergenic not near genes chr2L 15223944 intergenic not near genes chr2L 15224021 intergenic not near genes chr2L_6_15220001 chr2L_15220001 RAL-405 458 chr2L 15223895 15223909 chr2L 15223995 15224039 10 123 5.0 11.5 8.2 1.1 144 chr2L 15223895 intergenic not near genes chr2L 15223967 intergenic not near genes chr2L 15224039 intergenic not near genes chr2L_10_15220001 chr2L_15220001 RAL-405 459 chr2L 15279717 15279742 chr2L 15279820 15279840 5 102 8.5 13.5 11.0 0.4 123 chr2L 15279717 intergenic CR43682 +,CR45349 + chr2L 15279778 intergenic CR45349 +,CR43682 + chr2L 15279840 intergenic CR45349 +,CR43682 + chr2L_5_15275001 chr2L_15275001 RAL-405 460 chr2L 15343530 15343547 chr2L 15343625 15343637 9 98 9.0 7.5 8.2 1.0 107 chr2L 15343530 intergenic not near genes chr2L 15343584 intergenic not near genes chr2L 15343637 intergenic not near genes chr2L_9_15340001 chr2L_15340001 RAL-405 461 chr2L 15357776 15357807 chr2L 15357879 15357920 8 107 11.0 11.0 11.0 0.7 144 chr2L 15357776 intergenic not near genes chr2L 15357848 intergenic not near genes chr2L 15357920 intergenic not near genes chr2L_8_15355001 chr2L_15355001 RAL-405 462 chr2L 15393272 15393285 chr2L 15393355 15393396 9 107 11.0 9.5 10.2 0.8 124 chr2L 15393272 intergenic not near genes chr2L 15393334 intergenic not near genes chr2L 15393396 intergenic not near genes chr2L_9_15390001 chr2L_15390001 RAL-405 463 chr2L 15427322 15427351 chr2L 15427438 15427447 6 110 12.5 10.0 11.2 0.5 125 chr2L 15427322 intergenic not near genes chr2L 15427384 intergenic not near genes chr2L 15427447 intergenic not near genes chr2L_6_15425001 chr2L_15425001 RAL-405 464 chr2L 15446045 15446082 chr2L 15453518 15453561 blood 11 7482 5.5 4.0 4.8 1.9 7516 chr2L 15446045 intergenic not near genes chr2L 15449803 intergenic not near genes chr2L 15453561 intergenic not near genes chr2L_11_15445001 chr2L_15445001 RAL-405 465 chr2L 15483262 15483311 chr2L 15483368 15483417 19 101 5.5 2.0 3.8 4.0 155 chr2L 15483262 intergenic not near genes chr2L 15483340 intergenic not near genes chr2L 15483417 intergenic not near genes chr2L_19_15480001 chr2L_15480001 RAL-405 466 chr2L 15499890 15499906 chr2L 15499998 15500014 5 108 23.5 23.0 23.2 0.2 124 chr2L 15499890 intron lace + chr2L 15499952 intron lace + chr2L 15500014 intron lace + chr2L_5_15495001 chr2L_15495001 RAL-405 467 chr2L 15514310 15514329 chr2L 15514414 15514433 6 104 7.5 11.0 9.2 0.6 123 chr2L 15514310 intergenic not near genes chr2L 15514372 intergenic not near genes chr2L 15514433 intergenic not near genes chr2L_6_15510001 chr2L_15510001 RAL-405 468 chr2L 15540841 15540853 chr2L 15540954 15540977 4 121 17.0 12.5 14.8 0.3 136 chr2L 15540841 intergenic not near genes chr2L 15540909 intergenic not near genes chr2L 15540977 intergenic not near genes chr2L_4_15540001 chr2L_15540001 RAL-405 469 chr2L 15586393 15586415 chr2L 15593465 15593487 297 11 7072 13.0 5.0 9.0 1.1 7094 chr2L 15586393 intergenic not near genes chr2L 15589940 intergenic not near genes chr2L 15593487 intergenic not near genes chr2L_11_15585001 chr2L_15585001 RAL-405 470 chr2L 15586416 15586432 chr2L 15593463 15593504 297 11 7066 8.5 4.5 6.5 1.5 7088 chr2L 15586416 intergenic not near genes chr2L 15589960 intergenic not near genes chr2L 15593504 intergenic not near genes chr2L_11_15585001 chr2L_15585001 RAL-405 471 chr2L 15598754 15598788 chr2L 15598859 15598894 13 103 6.5 4.0 5.2 2.1 140 chr2L 15598754 intergenic not near genes chr2L 15598824 intergenic not near genes chr2L 15598894 intergenic not near genes chr2L_13_15595001 chr2L_15595001 RAL-405 472 chr2L 15732497 15732538 chr2L 15732612 15732652 8 108 14.5 15.5 15.0 0.5 155 chr2L 15732497 intron CycE - chr2L 15732574 intron CycE - chr2L 15732652 intron CycE - chr2L_8_15730001 chr2L_15730001 RAL-405 473 chr2L 15751440 15751474 chr2L 15751521 15751566 5 93 4.5 3.5 4.0 1.0 126 chr2L 15751440 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751503 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751566 3` UTR snRNA:U5:35D - chr2L_5_15750001 chr2L_15750001 RAL-405 474 chr2L 15823336 15823371 chr2L 15823432 15823467 9 94 7.0 7.0 7.0 1.1 131 chr2L 15823336 intergenic CR44601 - chr2L 15823402 intergenic CR44601 - chr2L 15823467 intergenic not near genes chr2L_9_15820001 chr2L_15820001 RAL-405 475 chr2L 15825159 15825165 chr2L 15832674 15832676 Tabor 4 7513 20.0 13.0 16.5 0.2 7517 chr2L 15825159 intergenic not near genes chr2L 15828918 intergenic not near genes chr2L 15832676 intergenic not near genes chr2L_4_15825001 chr2L_15825001 RAL-405 476 chr2L 15886926 15886973 chr2L 15887034 15887079 9 103 19.5 20.0 19.8 0.4 153 chr2L 15886926 intergenic not near genes chr2L 15887002 intergenic not near genes chr2L 15887079 intergenic not near genes chr2L_9_15885001 chr2L_15885001 RAL-405 477 chr2L 15907340 15907371 chr2L 15907702 15907721 5 362 15.0 13.0 14.0 0.3 381 chr2L 15907340 intron beat-Ib - chr2L 15907530 intron beat-Ib - chr2L 15907721 intron beat-Ib - chr2L_5_15905001 chr2L_15905001 RAL-405 478 chr2L 15956010 15956045 chr2L 15957497 15957532 hobo 9 1484 6.0 10.5 8.2 1.0 1522 chr2L 15956010 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957532 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-405 479 chr2L 16058132 16058150 chr2L 16058265 16058311 6 156 9.0 8.5 8.8 0.6 179 chr2L 16058132 intron beat-Ia + chr2L 16058222 intron beat-Ia + chr2L 16058311 intron beat-Ia + chr2L_6_16055001 chr2L_16055001 RAL-405 480 chr2L 16059963 16059978 chr2L 16060066 16060096 4 114 11.5 6.5 9.0 0.4 133 chr2L 16059963 intron beat-Ia + chr2L 16060030 intron beat-Ia + chr2L 16060096 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-405 481 chr2L 16084578 16084605 chr2L 16084707 16084737 5 127 7.5 5.5 6.5 0.7 159 chr2L 16084578 intergenic not near genes chr2L 16084658 intergenic not near genes chr2L 16084737 intergenic not near genes chr2L_5_16080001 chr2L_16080001 RAL-405 482 chr2L 16115513 16115555 chr2L 16115599 16115621 11 87 12.5 10.5 11.5 0.9 108 chr2L 16115513 intergenic not near genes chr2L 16115567 intergenic not near genes chr2L 16115621 intergenic not near genes chr2L_11_16115001 chr2L_16115001 RAL-405 483 chr2L 16139326 16139369 chr2L 16139884 16139927 7 552 14.5 16.0 15.2 0.4 601 chr2L 16139326 intergenic not near genes chr2L 16139626 intergenic not near genes chr2L 16139927 intergenic not near genes chr2L_7_16135001 chr2L_16135001 RAL-405 484 chr2L 16141153 16141195 chr2L 16146380 16146422 copia 10 5225 5.5 5.0 5.2 1.6 5269 chr2L 16141153 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146422 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-405 485 chr2L 16153730 16153749 chr2L 16160813 16160837 297 6 7085 4.5 3.0 3.8 1.2 7107 chr2L 16153730 intergenic not near genes chr2L 16157284 intergenic not near genes chr2L 16160837 intergenic not near genes chr2L_6_16155001 chr2L_16155001 RAL-405 486 chr2L 16161572 16161597 chr2L 16161744 16161751 6 167 5.5 5.5 5.5 0.9 179 chr2L 16161572 intergenic not near genes chr2L 16161662 intergenic not near genes chr2L 16161751 intergenic not near genes chr2L_6_16160001 chr2L_16160001 RAL-405 487 chr2L 16207057 16207084 chr2L 16207153 16207181 5 97 17.5 17.5 17.5 0.3 124 chr2L 16207057 intergenic not near genes chr2L 16207119 intergenic not near genes chr2L 16207181 intergenic not near genes chr2L_5_16205001 chr2L_16205001 RAL-405 488 chr2L 16226169 16226210 chr2L 16226270 16226280 6 95 20.5 19.5 20.0 0.3 111 chr2L 16226169 intergenic not near genes chr2L 16226224 intergenic not near genes chr2L 16226280 intergenic not near genes chr2L_6_16225001 chr2L_16225001 RAL-405 489 chr2L 16243201 16243368 chr2L 16243298 16243468 8 99 14.0 23.0 18.5 0.4 267 chr2L 16243201 exon CG42818 + chr2L 16243334 exon CG42818 + chr2L 16243468 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-405 490 chr2L 16254873 16254915 chr2L 16255152 16255194 10 275 18.5 14.5 16.5 0.6 321 chr2L 16254873 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255194 intron PRL-1 - chr2L_10_16255001 chr2L_16255001 RAL-405 491 chr2L 16354758 16354783 chr2L 16354870 16354888 7 110 7.0 2.0 4.5 1.3 130 chr2L 16354758 intergenic CaBP1 -,CG4455 + chr2L 16354823 intergenic CaBP1 -,CG4455 + chr2L 16354888 3` UTR CaBP1 - chr2L_7_16350001 chr2L_16350001 RAL-405 492 chr2L 16363650 16363759 chr2L 16363749 16363954 10 138 2.5 2.5 2.5 2.9 304 chr2L 16363650 intergenic not near genes chr2L 16363802 intergenic not near genes chr2L 16363954 intergenic not near genes chr2L_10_16360001 chr2L_16360001 RAL-405 493 chr2L 16363944 16363966 chr2L 16364210 16364232 4 265 20.5 10.0 15.2 0.2 288 chr2L 16363944 intergenic not near genes chr2L 16364088 intergenic not near genes chr2L 16364232 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-405 494 chr2L 16407399 16407420 chr2L 16407543 16407570 5 147 6.0 13.0 9.5 0.5 171 chr2L 16407399 intron CG5888 - chr2L 16407484 intron CG5888 - chr2L 16407570 intron CG5888 - chr2L_5_16405001 chr2L_16405001 RAL-405 495 chr2L 16468250 16468298 chr2L 16468384 16468416 4 126 0.0 1.0 0.5 2.7 166 chr2L 16468250 intron dac - chr2L 16468333 intron dac - chr2L 16468416 intron dac - chr2L_4_16465001 chr2L_16465001 RAL-405 496 chr2L 16507945 16507963 chr2L 16508033 16508061 5 95 0.0 6.0 3.0 1.2 116 chr2L 16507945 intergenic CG5953 -,Tpr2 + chr2L 16508003 intergenic CG5953 -,Tpr2 + chr2L 16508061 intergenic CG5953 -,Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-405 497 chr2L 16511967 16511988 chr2L 16519114 16519132 HMS-Beagle 7 7146 6.5 4.5 5.5 1.1 7165 chr2L 16511967 intron CG5953 - chr2L 16515550 intron CG5953 - chr2L 16519132 intron CG5953 - chr2L_7_16515001 chr2L_16515001 RAL-405 498 chr2L 16537314 16537333 chr2L 16537400 16537424 5 93 20.0 19.5 19.8 0.2 110 chr2L 16537314 intergenic not near genes chr2L 16537369 intergenic not near genes chr2L 16537424 intergenic not near genes chr2L_5_16535001 chr2L_16535001 RAL-405 499 chr2L 16547233 16547272 chr2L 16547406 16547445 10 172 7.5 4.5 6.0 1.4 212 chr2L 16547233 intron CG42389 + chr2L 16547339 intron CG42389 + chr2L 16547445 intron CG42389 + chr2L_10_16545001 chr2L_16545001 RAL-405 500 chr2L 16570827 16570864 chr2L 16570918 16570960 7 95 10.5 12.5 11.5 0.6 133 chr2L 16570827 intron CG42389 + chr2L 16570894 intron CG42389 + chr2L 16570960 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-405 501 chr2L 16573631 16573656 chr2L 16573719 16573725 5 89 10.5 10.0 10.2 0.4 94 chr2L 16573631 intron CG42389 + chr2L 16573678 intron CG42389 + chr2L 16573725 intron CG42389 + chr2L_5_16570001 chr2L_16570001 RAL-405 502 chr2L 16583072 16583122 chr2L 16583180 16583215 28 102 2.5 6.0 4.2 5.4 143 chr2L 16583072 intron CG42389 + chr2L 16583144 intron CG42389 + chr2L 16583215 intron CG42389 + chr2L_28_16580001 chr2L_16580001 RAL-405 503 chr2L 16583532 16583584 chr2L 16583686 16583698 12 146 6.0 3.0 4.5 2.2 166 chr2L 16583532 intron CG42389 + chr2L 16583615 intron CG42389 + chr2L 16583698 intron CG42389 + chr2L_12_16580001 chr2L_16580001 RAL-405 504 chr2L 16594019 16594145 chr2L 16594101 16594255 6 97 22.0 22.0 22.0 0.3 236 chr2L 16594019 intron CG42389 + chr2L 16594137 intron CG42389 + chr2L 16594255 intron CG42389 + chr2L_6_16590001 chr2L_16590001 RAL-405 505 chr2L 16621622 16621643 chr2L 16621714 16621741 7 97 8.0 7.5 7.8 0.8 119 chr2L 16621622 intron CG42389 + chr2L 16621682 intron CG42389 + chr2L 16621741 intron CG42389 + chr2L_7_16620001 chr2L_16620001 RAL-405 506 chr2L 16641408 16641441 chr2L 16641509 16641527 9 101 25.5 24.0 24.8 0.3 119 chr2L 16641408 intron CG42389 + chr2L 16641468 intron CG42389 + chr2L 16641527 intron CG42389 + chr2L_9_16640001 chr2L_16640001 RAL-405 507 chr2L 16695115 16695148 chr2L 16695213 16695231 4 96 13.0 19.0 16.0 0.2 116 chr2L 16695115 intron grp + chr2L 16695173 intron grp + chr2L 16695231 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-405 508 chr2L 16697048 16697057 chr2L 16697218 16697270 5 187 7.5 0.0 3.8 1.0 222 chr2L 16697048 intron grp + chr2L 16697159 intron grp + chr2L 16697270 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-405 509 chr2L 16697063 16697078 chr2L 16697217 16697248 6 182 5.5 0.0 2.8 1.6 185 chr2L 16697063 intron grp + chr2L 16697156 intron grp + chr2L 16697248 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-405 510 chr2L 16703840 16703890 chr2L 16703943 16703984 5 101 17.5 19.5 18.5 0.3 144 chr2L 16703840 intergenic CG31808 - chr2L 16703912 intergenic CG31808 - chr2L 16703984 intergenic CG31808 - chr2L_5_16700001 chr2L_16700001 RAL-405 511 chr2L 16721326 16721341 chr2L 16721435 16721450 4 108 9.5 6.5 8.0 0.4 124 chr2L 16721326 intron Cyt-c-p + chr2L 16721388 intron Cyt-c-p + chr2L 16721450 intron Cyt-c-p + chr2L_4_16720001 chr2L_16720001 RAL-405 512 chr2L 16721346 16721369 chr2L 16721430 16721478 9 103 7.0 7.0 7.0 1.1 132 chr2L 16721346 intron Cyt-c-p + chr2L 16721412 intron Cyt-c-p + chr2L 16721478 intron Cyt-c-p + chr2L_9_16720001 chr2L_16720001 RAL-405 513 chr2L 16764951 16765000 chr2L 16765051 16765058 15 94 5.5 7.5 6.5 2.0 107 chr2L 16764951 intergenic not near genes chr2L 16765004 intergenic not near genes chr2L 16765058 intergenic not near genes chr2L_15_16765001 chr2L_16765001 RAL-405 514 chr2L 16796071 16796109 chr2L 16796178 16796230 6 111 18.0 16.5 17.2 0.3 159 chr2L 16796071 intergenic Ugt36Ba + chr2L 16796150 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796230 intergenic Ugt36Ba +,Ugt36Bb + chr2L_6_16795001 chr2L_16795001 RAL-405 515 chr2L 16852790 16852806 chr2L 16859952 16859958 Doc4-element 9 7160 7.5 7.5 7.5 1.1 7168 chr2L 16852790 intergenic CG31810 - chr2L 16856374 intron CG31809 - chr2L 16859958 intergenic CG6012 - chr2L_9_16855001 chr2L_16855001 RAL-405 516 chr2L 16852725 16852737 chr2L 16859704 16859716 Doc4-element 5 6980 10.0 0.5 5.2 0.8 6991 chr2L 16852725 intergenic CG31810 - chr2L 16856220 intron CG31809 - chr2L 16859716 intergenic CG6012 - chr2L_5_16855001 chr2L_16855001 RAL-405 517 chr2L 16867025 16867040 chr2L 16867124 16867155 6 112 3.5 4.0 3.8 1.2 130 chr2L 16867025 intergenic not near genes chr2L 16867090 intergenic not near genes chr2L 16867155 intergenic not near genes chr2L_6_16865001 chr2L_16865001 RAL-405 518 chr2L 16949604 16949639 chr2L 16949700 16949743 17 99 17.5 20.5 19.0 0.8 139 chr2L 16949604 intron CR44393 - chr2L 16949674 intron CR44393 - chr2L 16949743 intron CR44393 - chr2L_17_16945001 chr2L_16945001 RAL-405 519 chr2L 16958086 16958125 chr2L 16962889 16962933 Doc 20 4806 5.5 1.5 3.5 4.4 4847 chr2L 16958086 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962933 intergenic not near genes chr2L_20_16960001 chr2L_16960001 RAL-405 520 chr2L 17000116 17000148 chr2L 17000245 17000290 6 139 6.0 7.5 6.8 0.8 174 chr2L 17000116 intergenic not near genes chr2L 17000203 intergenic not near genes chr2L 17000290 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-405 521 chr2L 17062737 17062790 chr2L 17062839 17062892 13 101 3.5 3.5 3.5 2.9 155 chr2L 17062737 intergenic not near genes chr2L 17062814 intergenic not near genes chr2L 17062892 intergenic not near genes chr2L_13_17060001 chr2L_17060001 RAL-405 522 chr2L 17079440 17079485 chr2L 17079546 17079574 10 104 8.5 10.5 9.5 1.0 134 chr2L 17079440 intergenic not near genes chr2L 17079507 intergenic not near genes chr2L 17079574 intergenic not near genes chr2L_10_17075001 chr2L_17075001 RAL-405 523 chr2L 17087366 17087399 chr2L 17087504 17087537 4 137 8.5 14.0 11.2 0.3 171 chr2L 17087366 intergenic CG12620 + chr2L 17087452 intergenic CG12620 + chr2L 17087537 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-405 524 chr2L 17120832 17120869 chr2L 17120926 17120943 8 87 9.5 7.5 8.5 0.8 111 chr2L 17120832 intergenic not near genes chr2L 17120888 intergenic not near genes chr2L 17120943 intergenic not near genes chr2L_8_17120001 chr2L_17120001 RAL-405 525 chr2L 17167546 17167554 chr2L 17167807 17167815 pogo 7 259 9.0 4.5 6.8 0.9 269 chr2L 17167546 intron,intron CG34106 +,beat-IIIa + chr2L 17167680 intron,intron CG34106 +,beat-IIIa + chr2L 17167815 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-405 526 chr2L 17167555 17167595 chr2L 17167806 17167829 pogo 20 252 3.0 4.5 3.8 4.2 274 chr2L 17167555 intron,intron CG34106 +,beat-IIIa + chr2L 17167692 intron,intron CG34106 +,beat-IIIa + chr2L 17167829 intron,intron CG34106 +,beat-IIIa + chr2L_20_17165001 chr2L_17165001 RAL-405 527 chr2L 17168174 17168227 chr2L 17168972 17168995 10 792 8.0 10.5 9.2 1.0 821 chr2L 17168174 intron,intron CG34106 +,beat-IIIa + chr2L 17168584 intron,intron CG34106 +,beat-IIIa + chr2L 17168995 intron,intron CG34106 +,beat-IIIa + chr2L_10_17165001 chr2L_17165001 RAL-405 528 chr2L 17199149 17199180 chr2L 17200630 17200667 hobo 9 1485 7.5 3.0 5.2 1.5 1518 chr2L 17199149 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200667 intron beat-IIIc - chr2L_9_17195001 chr2L_17195001 RAL-405 529 chr2L 17273173 17273226 chr2L 17277976 17278009 F-element 6 4797 2.0 3.0 2.5 1.7 4836 chr2L 17273173 intergenic not near genes chr2L 17275591 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-405 530 chr2L 17339745 17339786 chr2L 17340120 17340167 7 378 6.0 7.0 6.5 0.9 422 chr2L 17339745 intergenic not near genes chr2L 17339956 intergenic not near genes chr2L 17340167 intergenic not near genes chr2L_7_17335001 chr2L_17335001 RAL-405 531 chr2L 17386001 17386036 chr2L 17386102 17386132 9 99 14.0 15.5 14.8 0.6 131 chr2L 17386001 intron CLIP-190 + chr2L 17386066 intron CLIP-190 + chr2L 17386132 intron CLIP-190 + chr2L_9_17385001 chr2L_17385001 RAL-405 532 chr2L 17386038 17386039 chr2L 17386096 17386140 4 90 14.0 15.0 14.5 0.3 102 chr2L 17386038 intron CLIP-190 + chr2L 17386089 intron CLIP-190 + chr2L 17386140 intron CLIP-190 + chr2L_4_17385001 chr2L_17385001 RAL-405 533 chr2L 17391617 17391660 chr2L 17391720 17391748 5 94 12.0 13.0 12.5 0.4 131 chr2L 17391617 intron CLIP-190 + chr2L 17391682 intron CLIP-190 + chr2L 17391748 intron CLIP-190 + chr2L_5_17390001 chr2L_17390001 RAL-405 534 chr2L 17420881 17420912 chr2L 17420982 17420993 6 96 16.5 11.0 13.8 0.4 112 chr2L 17420881 intron Dif - chr2L 17420937 intron Dif - chr2L 17420993 intron Dif - chr2L_6_17420001 chr2L_17420001 RAL-405 535 chr2L 17424687 17424738 chr2L 17424819 17424850 7 128 13.0 10.0 11.5 0.6 163 chr2L 17424687 intron Dif - chr2L 17424768 intron Dif - chr2L 17424850 intron Dif - chr2L_7_17420001 chr2L_17420001 RAL-405 536 chr2L 17425747 17425802 chr2L 17425894 17425922 21 138 6.5 5.5 6.0 3.0 175 chr2L 17425747 intron Dif - chr2L 17425834 intron Dif - chr2L 17425922 intron Dif - chr2L_21_17425001 chr2L_17425001 RAL-405 537 chr2L 17432014 17432041 chr2L 17432141 17432143 1360 9 124 0.5 8.0 4.2 1.7 129 chr2L 17432014 intron Dif - chr2L 17432078 intron Dif - chr2L 17432143 intron Dif - chr2L_9_17430001 chr2L_17430001 RAL-405 538 chr2L 17532912 17532945 chr2L 17533264 17533302 12 362 7.5 5.0 6.2 1.7 390 chr2L 17532912 intergenic not near genes chr2L 17533107 intergenic not near genes chr2L 17533302 intergenic not near genes chr2L_12_17530001 chr2L_17530001 RAL-405 539 chr2L 17537011 17537054 chr2L 17537137 17537176 10 121 7.0 7.0 7.0 1.2 165 chr2L 17537011 intergenic not near genes chr2L 17537094 intergenic not near genes chr2L 17537176 intergenic not near genes chr2L_10_17535001 chr2L_17535001 RAL-405 540 chr2L 17543577 17543591 chr2L 17543690 17543704 4 113 9.5 4.0 6.8 0.5 127 chr2L 17543577 intergenic not near genes chr2L 17543640 intergenic not near genes chr2L 17543704 intergenic not near genes chr2L_4_17540001 chr2L_17540001 RAL-405 541 chr2L 17543602 17543625 chr2L 17543685 17543705 7 96 4.0 3.0 3.5 1.6 103 chr2L 17543602 intergenic not near genes chr2L 17543654 intergenic not near genes chr2L 17543705 intergenic not near genes chr2L_7_17540001 chr2L_17540001 RAL-405 542 chr2L 17551319 17551324 chr2L 17551433 17551438 4 114 7.5 2.0 4.8 0.7 119 chr2L 17551319 intergenic not near genes chr2L 17551378 intergenic not near genes chr2L 17551438 intergenic not near genes chr2L_4_17550001 chr2L_17550001 RAL-405 543 chr2L 17565367 17565404 chr2L 17565473 17565475 6 102 13.5 9.5 11.5 0.5 108 chr2L 17565367 intergenic not near genes chr2L 17565421 intergenic not near genes chr2L 17565475 intergenic not near genes chr2L_6_17565001 chr2L_17565001 RAL-405 544 chr2L 17592786 17592815 chr2L 17592898 17592902 4 102 11.5 12.0 11.8 0.3 116 chr2L 17592786 intron Sytalpha + chr2L 17592844 intron Sytalpha + chr2L 17592902 intron Sytalpha + chr2L_4_17590001 chr2L_17590001 RAL-405 545 chr2L 17633852 17633900 chr2L 17633949 17633987 7 91 21.0 18.5 19.8 0.3 135 chr2L 17633852 intergenic not near genes chr2L 17633920 intergenic not near genes chr2L 17633987 intergenic not near genes chr2L_7_17630001 chr2L_17630001 RAL-405 546 chr2L 17675926 17675933 chr2L 17676025 17676032 5 98 21.5 8.0 14.8 0.3 106 chr2L 17675926 intron CadN - chr2L 17675979 intron CadN - chr2L 17676032 intron CadN - chr2L_5_17675001 chr2L_17675001 RAL-405 547 chr2L 17675936 17675975 chr2L 17676021 17676069 15 97 10.0 7.0 8.5 1.6 133 chr2L 17675936 intron CadN - chr2L 17676002 intron CadN - chr2L 17676069 intron CadN - chr2L_15_17675001 chr2L_17675001 RAL-405 548 chr2L 17681244 17681264 chr2L 17681819 17681859 5 584 9.5 16.0 12.8 0.4 615 chr2L 17681244 intron CadN - chr2L 17681552 intron CadN - chr2L 17681859 intron CadN - chr2L_5_17680001 chr2L_17680001 RAL-405 549 chr2L 17692938 17692974 chr2L 17693072 17693108 11 133 8.5 8.5 8.5 1.2 170 chr2L 17692938 intron CadN - chr2L 17693023 intron CadN - chr2L 17693108 intron CadN - chr2L_11_17690001 chr2L_17690001 RAL-405 550 chr2L 17709115 17709151 chr2L 17709199 17709229 7 91 8.5 8.5 8.5 0.7 114 chr2L 17709115 intron CadN - chr2L 17709172 intron CadN - chr2L 17709229 intron CadN - chr2L_7_17705001 chr2L_17705001 RAL-405 551 chr2L 17723770 17723790 chr2L 17723883 17723903 6 113 6.0 4.5 5.2 1.0 133 chr2L 17723770 intron CadN - chr2L 17723836 intron CadN - chr2L 17723903 intron CadN - chr2L_6_17720001 chr2L_17720001 RAL-405 552 chr2L 17723795 17723801 chr2L 17723882 17723914 4 102 3.0 4.5 3.8 0.8 119 chr2L 17723795 intron CadN - chr2L 17723854 intron CadN - chr2L 17723914 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-405 553 chr2L 17727859 17727879 chr2L 17729338 17729348 hobo 5 1476 0.5 5.5 3.0 1.2 1489 chr2L 17727859 intron CadN - chr2L 17728604 intron CadN - chr2L 17729348 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-405 554 chr2L 17741942 17741983 chr2L 17742038 17742079 7 90 12.5 8.5 10.5 0.6 137 chr2L 17741942 intron CadN - chr2L 17742010 intron CadN - chr2L 17742079 intron CadN - chr2L_7_17740001 chr2L_17740001 RAL-405 555 chr2L 17819915 17819950 chr2L 17825138 17825173 copia 7 5219 7.5 3.5 5.5 1.1 5258 chr2L 17819915 intron CadN2 - chr2L 17822544 intron CadN2 - chr2L 17825173 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-405 556 chr2L 17879977 17880025 chr2L 17880084 17880092 6 94 0.5 0.5 0.5 4.0 115 chr2L 17879977 intergenic not near genes chr2L 17880034 intergenic not near genes chr2L 17880092 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-405 557 chr2L 17893500 17893537 chr2L 17893800 17893836 6 296 17.5 12.5 15.0 0.4 336 chr2L 17893500 intergenic CR43420 + chr2L 17893668 intergenic CR43420 + chr2L 17893836 5` UTR CR43420 + chr2L_6_17890001 chr2L_17890001 RAL-405 558 chr2L 17926003 17926009 chr2L 17926209 17926215 4 206 11.5 4.5 8.0 0.4 212 chr2L 17926003 intergenic not near genes chr2L 17926109 intergenic not near genes chr2L 17926215 intergenic not near genes chr2L_4_17925001 chr2L_17925001 RAL-405 559 chr2L 17933527 17933547 chr2L 17933926 17933958 5 408 7.5 9.5 8.5 0.5 431 chr2L 17933527 intergenic not near genes chr2L 17933742 intergenic not near genes chr2L 17933958 intergenic not near genes chr2L_5_17930001 chr2L_17930001 RAL-405 560 chr2L 17938693 17938718 chr2L 17938779 17938824 5 91 8.0 6.0 7.0 0.6 131 chr2L 17938693 intergenic CR44399 - chr2L 17938758 intergenic CR44399 - chr2L 17938824 intergenic CR44399 - chr2L_5_17935001 chr2L_17935001 RAL-405 561 chr2L 17943885 17943916 chr2L 17944003 17944039 10 120 6.5 6.5 6.5 1.3 154 chr2L 17943885 intergenic not near genes chr2L 17943962 intergenic not near genes chr2L 17944039 intergenic not near genes chr2L_10_17940001 chr2L_17940001 RAL-405 562 chr2L 17951924 17951974 chr2L 17953411 17953461 hobo 11 1484 5.0 5.5 5.2 1.8 1537 chr2L 17951924 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953461 intergenic not near genes chr2L_11_17950001 chr2L_17950001 RAL-405 563 chr2L 18051868 18051892 chr2L 18061028 18061029 roo 4 9152 5.5 1.0 3.2 1.0 9161 chr2L 18051868 intron rdo + chr2L 18056448 intron rdo + chr2L 18061029 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-405 564 chr2L 18079816 18079847 chr2L 18079906 18079948 11 101 12.0 12.5 12.2 0.8 132 chr2L 18079816 intron Arr1 + chr2L 18079882 intron Arr1 + chr2L 18079948 intron Arr1 + chr2L_11_18075001 chr2L_18075001 RAL-405 565 chr2L 18111222 18111267 chr2L 18111333 18111347 7 102 4.5 4.5 4.5 1.3 125 chr2L 18111222 intergenic not near genes chr2L 18111284 intergenic not near genes chr2L 18111347 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-405 566 chr2L 18177757 18177803 chr2L 18177876 18177921 6 105 11.5 7.0 9.2 0.6 164 chr2L 18177757 intron CG42750 - chr2L 18177839 intron CG42750 - chr2L 18177921 intron CG42750 - chr2L_6_18175001 chr2L_18175001 RAL-405 567 chr2L 18196219 18196255 chr2L 18196397 18196404 5 172 15.5 20.0 17.8 0.3 185 chr2L 18196219 intron CG42750 - chr2L 18196312 intron CG42750 - chr2L 18196404 intron CG42750 - chr2L_5_18195001 chr2L_18195001 RAL-405 568 chr2L 18255485 18255514 chr2L 18255590 18255603 10 100 2.0 4.5 3.2 2.4 118 chr2L 18255485 intron CG42750 - chr2L 18255544 intron CG42750 - chr2L 18255603 intron CG42750 - chr2L_10_18255001 chr2L_18255001 RAL-405 569 chr2L 18274028 18274067 chr2L 18274128 18274173 10 96 9.0 6.5 7.8 1.1 145 chr2L 18274028 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274173 intron CG42750 - chr2L_10_18270001 chr2L_18270001 RAL-405 570 chr2L 18286403 18286442 chr2L 18286516 18286525 8 103 8.0 7.0 7.5 0.9 122 chr2L 18286403 intergenic not near genes chr2L 18286464 intergenic not near genes chr2L 18286525 intergenic not near genes chr2L_8_18285001 chr2L_18285001 RAL-405 571 chr2L 18408014 18408022 chr2L 18412818 18412826 Doc 6 4804 6.0 0.0 3.0 1.5 4812 chr2L 18408014 intergenic not near genes chr2L 18410420 intergenic not near genes chr2L 18412826 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-405 572 chr2L 18440039 18440331 chr2L 18440319 18440441 8 184 1.5 3.5 2.5 2.3 402 chr2L 18440039 intergenic not near genes chr2L 18440240 intergenic not near genes chr2L 18440441 intergenic not near genes chr2L_8_18440001 chr2L_18440001 RAL-405 573 chr2L 18584756 18584772 chr2L 18584861 18584867 4 102 3.5 10.5 7.0 0.5 111 chr2L 18584756 intron Pde11 - chr2L 18584812 intron Pde11 - chr2L 18584867 intron Pde11 - chr2L_4_18580001 chr2L_18580001 RAL-405 574 chr2L 18629375 18629388 chr2L 18629470 18629493 5 100 4.0 9.0 6.5 0.7 118 chr2L 18629375 intron MESR3 + chr2L 18629434 intron MESR3 + chr2L 18629493 intron MESR3 + chr2L_5_18625001 chr2L_18625001 RAL-405 575 chr2L 18656457 18656500 chr2L 18656731 18656763 6 262 8.5 4.5 6.5 0.8 306 chr2L 18656457 intron MESR3 + chr2L 18656610 intron MESR3 + chr2L 18656763 intron MESR3 + chr2L_6_18655001 chr2L_18655001 RAL-405 576 chr2L 18791062 18791099 chr2L 18791148 18791172 12 90 7.5 11.5 9.5 1.1 110 chr2L 18791062 intron ham - chr2L 18791117 intron ham - chr2L 18791172 intron ham - chr2L_12_18790001 chr2L_18790001 RAL-405 577 chr2L 18811399 18811413 chr2L 18811501 18811515 4 102 16.5 9.5 13.0 0.3 116 chr2L 18811399 intergenic CG10570 -,CG42502 - chr2L 18811457 intergenic CG10570 -,CG42502 - chr2L 18811515 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-405 578 chr2L 18811416 18811437 chr2L 18811487 18811539 5 96 14.0 8.0 11.0 0.4 123 chr2L 18811416 intergenic CG10570 -,CG42502 - chr2L 18811478 intergenic CG10570 -,CG42502 - chr2L 18811539 intergenic not near genes chr2L_5_18810001 chr2L_18810001 RAL-405 579 chr2L 18812562 18812587 chr2L 18812825 18812870 5 270 5.5 7.0 6.2 0.7 308 chr2L 18812562 intergenic CG17325 +,CG42305 + chr2L 18812716 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812870 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-405 580 chr2L 18902611 18902627 chr2L 18902912 18902928 7 300 12.0 6.5 9.2 0.7 317 chr2L 18902611 intergenic not near genes chr2L 18902770 intergenic not near genes chr2L 18902928 intergenic not near genes chr2L_7_18900001 chr2L_18900001 RAL-405 581 chr2L 18902630 18902652 chr2L 18902906 18902920 5 286 6.0 6.0 6.0 0.7 290 chr2L 18902630 intergenic not near genes chr2L 18902775 intergenic not near genes chr2L 18902920 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-405 582 chr2L 18981737 18981772 chr2L 18981834 18981869 4 92 10.0 8.5 9.2 0.4 132 chr2L 18981737 intron Swip-1 - chr2L 18981803 intron Swip-1 - chr2L 18981869 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-405 583 chr2L 18990315 18990339 chr2L 18990422 18990455 5 114 13.5 18.0 15.8 0.3 140 chr2L 18990315 intergenic CG15170 - chr2L 18990385 intergenic CG15170 - chr2L 18990455 intergenic CG15170 - chr2L_5_18990001 chr2L_18990001 RAL-405 584 chr2L 19078962 19078992 chr2L 19079329 19079353 7 370 2.5 15.5 9.0 0.7 391 chr2L 19078962 exon CG10700 - chr2L 19079158 intergenic Lim3 -,CG10700 - chr2L 19079353 3` UTR Lim3 - chr2L_7_19075001 chr2L_19075001 RAL-405 585 chr2L 19163364 19163394 chr2L 19163465 19163495 6 100 12.0 9.0 10.5 0.5 131 chr2L 19163364 intron brat + chr2L 19163430 intron brat + chr2L 19163495 intron brat + chr2L_6_19160001 chr2L_19160001 RAL-405 586 chr2L 19189700 19189754 chr2L 19189798 19189837 6 95 22.5 22.0 22.2 0.3 137 chr2L 19189700 3` UTR pigeon + chr2L 19189768 3` UTR pigeon + chr2L 19189837 3` UTR pigeon + chr2L_6_19185001 chr2L_19185001 RAL-405 587 chr2L 19345012 19345025 chr2L 19357231 19357251 blood 5 12226 3.5 3.5 3.5 1.1 12239 chr2L 19345012 intron dnt - chr2L 19351132 intron dnt - chr2L 19357251 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-405 588 chr2L 19345026 19345042 chr2L 19357220 19357271 blood 6 12211 2.5 2.5 2.5 1.7 12245 chr2L 19345026 intron dnt - chr2L 19351148 intron dnt - chr2L 19357271 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-405 589 chr2L 19357526 19357566 chr2L 19357636 19357650 11 105 6.0 5.5 5.8 1.6 124 chr2L 19357526 intron dnt - chr2L 19357588 intron dnt - chr2L 19357650 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-405 590 chr2L 19374475 19374502 chr2L 19374604 19374613 4 122 16.0 18.5 17.2 0.2 138 chr2L 19374475 intergenic not near genes chr2L 19374544 intergenic not near genes chr2L 19374613 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-405 591 chr2L 19380501 19380529 chr2L 19380586 19380629 6 96 9.0 14.0 11.5 0.5 128 chr2L 19380501 intergenic CG17350 + chr2L 19380565 intergenic CG17350 + chr2L 19380629 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-405 592 chr2L 19405600 19405628 chr2L 19405710 19405738 10 108 10.0 3.5 6.8 1.3 138 chr2L 19405600 intron Pax - chr2L 19405669 intron Pax - chr2L 19405738 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-405 593 chr2L 19441047 19441089 chr2L 19441143 19441186 12 94 9.5 8.5 9.0 1.2 139 chr2L 19441047 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441186 5` UTR CG10237 - chr2L_12_19440001 chr2L_19440001 RAL-405 594 chr2L 19559991 19560006 chr2L 19560258 19560279 4 272 19.5 16.0 17.8 0.2 288 chr2L 19559991 exon Tep5 + chr2L 19560135 exon Tep5 + chr2L 19560279 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-405 595 chr2L 19620088 19620127 chr2L 19621086 19621136 jockey 5 1000 3.0 2.0 2.5 1.4 1048 chr2L 19620088 intron Lar + chr2L 19620612 intron Lar + chr2L 19621136 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-405 596 chr2L 19638514 19638557 chr2L 19638622 19638665 7 106 8.0 8.5 8.2 0.8 151 chr2L 19638514 intron Lar + chr2L 19638590 intron Lar + chr2L 19638665 intron Lar + chr2L_7_19635001 chr2L_19635001 RAL-405 597 chr2L 19652548 19652597 chr2L 19674004 19674053 opus 11 21455 8.0 4.0 6.0 1.6 21505 chr2L 19652548 intron Lar + chr2L 19663300 intron Lar + chr2L 19674053 intron Lar + chr2L_11_19660001 chr2L_19660001 RAL-405 598 chr2L 19703537 19703568 chr2L 19712674 19712723 roo 8 9144 7.0 8.5 7.8 0.9 9186 chr2L 19703537 intron Lar + chr2L 19708130 intron Lar + chr2L 19712723 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-405 599 chr2L 19717902 19717945 chr2L 19717999 19718044 10 100 25.0 26.5 25.8 0.4 142 chr2L 19717902 intron Lar + chr2L 19717973 intron Lar + chr2L 19718044 intron Lar + chr2L_10_19715001 chr2L_19715001 RAL-405 600 chr2L 19718500 19718518 chr2L 19718615 19718618 4 110 2.5 4.0 3.2 1.0 118 chr2L 19718500 intron Lar + chr2L 19718559 intron Lar + chr2L 19718618 intron Lar + chr2L_4_19715001 chr2L_19715001 RAL-405 601 chr2L 19737366 19737385 chr2L 19740821 19740821 1360 6 3460 3.0 1.5 2.2 1.9 3455 chr2L 19737366 intergenic Nf-YB + chr2L 19739094 intergenic not near genes chr2L 19740821 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-405 602 chr2L 19762809 19762831 chr2L 19763056 19763093 pogo 10 258 4.0 7.0 5.5 1.5 284 chr2L 19762809 5` UTR fbp - chr2L 19762951 intron fbp - chr2L 19763093 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-405 603 chr2L 19776640 19776660 chr2L 19776740 19776754 7 94 11.0 10.0 10.5 0.6 114 chr2L 19776640 3` UTR CdGAPr - chr2L 19776697 3` UTR CdGAPr - chr2L 19776754 3` UTR CdGAPr - chr2L_7_19775001 chr2L_19775001 RAL-405 604 chr2L 19824401 19824434 chr2L 19824504 19824520 11 99 3.5 7.0 5.2 1.8 119 chr2L 19824401 intron sick + chr2L 19824460 intron sick + chr2L 19824520 intron sick + chr2L_11_19820001 chr2L_19820001 RAL-405 605 chr2L 19846264 19846276 chr2L 19846365 19846377 4 101 9.5 12.5 11.0 0.3 113 chr2L 19846264 intron sick + chr2L 19846320 intron sick + chr2L 19846377 intron sick + chr2L_4_19845001 chr2L_19845001 RAL-405 606 chr2L 19893646 19893682 chr2L 19893750 19893781 7 100 10.5 12.0 11.2 0.6 135 chr2L 19893646 intron sick + chr2L 19893714 intron sick + chr2L 19893781 intron sick + chr2L_7_19890001 chr2L_19890001 RAL-405 607 chr2L 19979246 19979286 chr2L 19979335 19979373 4 82 2.5 3.5 3.0 1.0 127 chr2L 19979246 intron,5` UTR CG43861 -,CR43620 + chr2L 19979310 intron,5` UTR CG43861 -,CR43620 + chr2L 19979373 intron,5` UTR CG43861 -,CR43620 + chr2L_4_19975001 chr2L_19975001 RAL-405 608 chr2L 20005854 20005899 chr2L 20010950 20010994 flea 13 5091 10.5 5.5 8.0 1.4 5140 chr2L 20005854 intron CG43861 - chr2L 20008424 intron CG43861 - chr2L 20010994 intron CG43861 - chr2L_13_20005001 chr2L_20005001 RAL-405 609 chr2L 20041172 20041192 chr2L 20041337 20041357 4 165 17.0 13.0 15.0 0.2 185 chr2L 20041172 intron sNPF + chr2L 20041264 intron sNPF + chr2L 20041357 intron sNPF + chr2L_4_20040001 chr2L_20040001 RAL-405 610 chr2L 20085464 20085495 chr2L 20085571 20085586 6 102 4.0 6.5 5.2 1.0 122 chr2L 20085464 intron neb + chr2L 20085525 intron neb + chr2L 20085586 intron neb + chr2L_6_20085001 chr2L_20085001 RAL-405 611 chr2L 20087266 20087277 chr2L 20087362 20087393 6 110 11.5 15.5 13.5 0.4 127 chr2L 20087266 intron neb + chr2L 20087330 intron neb + chr2L 20087393 intron neb + chr2L_6_20085001 chr2L_20085001 RAL-405 612 chr2L 20127963 20127997 chr2L 20128067 20128101 5 97 7.5 10.5 9.0 0.5 138 chr2L 20127963 intergenic not near genes chr2L 20128032 intergenic not near genes chr2L 20128101 intergenic not near genes chr2L_5_20125001 chr2L_20125001 RAL-405 613 chr2L 20236520 20236535 chr2L 20236606 20236631 4 94 22.5 20.0 21.2 0.2 111 chr2L 20236520 intergenic not near genes chr2L 20236576 intergenic not near genes chr2L 20236631 intergenic not near genes chr2L_4_20235001 chr2L_20235001 RAL-405 614 chr2L 20272107 20272143 chr2L 20282829 20282864 copia 12 10723 6.5 5.0 5.8 1.8 10757 chr2L 20272107 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282864 intergenic not near genes chr2L_12_20275001 chr2L_20275001 RAL-405 615 chr2L 20303146 20303191 chr2L 20310634 20310649 blood 12 7482 5.0 6.5 5.8 1.8 7503 chr2L 20303146 intergenic not near genes chr2L 20306898 intergenic not near genes chr2L 20310649 intergenic not near genes chr2L_12_20305001 chr2L_20305001 RAL-405 616 chr2L 20327225 20327253 chr2L 20327323 20327351 5 97 15.0 22.5 18.8 0.3 126 chr2L 20327225 intron spir + chr2L 20327288 intron spir + chr2L 20327351 intron spir + chr2L_5_20325001 chr2L_20325001 RAL-405 617 chr2L 20368098 20368138 chr2L 20368265 20368307 5 160 2.0 8.5 5.2 0.8 209 chr2L 20368098 intergenic not near genes chr2L 20368202 intergenic not near genes chr2L 20368307 intergenic not near genes chr2L_5_20365001 chr2L_20365001 RAL-405 618 chr2L 20372209 20372225 chr2L 20372470 20372486 pogo 6 262 3.0 3.5 3.2 1.4 277 chr2L 20372209 intergenic Ugt37a1 - chr2L 20372348 intergenic Ugt37a1 - chr2L 20372486 exon Ugt37a1 - chr2L_6_20370001 chr2L_20370001 RAL-405 619 chr2L 20372233 20372243 chr2L 20372469 20372504 pogo 4 253 1.0 3.0 2.0 1.3 271 chr2L 20372233 intergenic Ugt37a1 - chr2L 20372368 intergenic Ugt37a1 - chr2L 20372504 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-405 620 chr2L 20376048 20376062 chr2L 20376956 20376985 8 906 14.0 32.5 23.2 0.3 937 chr2L 20376048 intergenic not near genes chr2L 20376516 intergenic CG16798 - chr2L 20376985 3` UTR CG16798 - chr2L_8_20375001 chr2L_20375001 RAL-405 621 chr2L 20393777 20393816 chr2L 20393948 20393967 4 164 18.0 11.5 14.8 0.3 190 chr2L 20393777 intron CG10947 - chr2L 20393872 intron CG10947 - chr2L 20393967 intron CG10947 - chr2L_4_20390001 chr2L_20390001 RAL-405 622 chr2L 20498672 20498706 chr2L 20498791 20498825 8 118 4.5 2.5 3.5 1.8 153 chr2L 20498672 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498825 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-405 623 chr2L 20553181 20553211 chr2L 20553277 20553296 4 93 13.5 13.0 13.2 0.3 115 chr2L 20553181 intergenic not near genes chr2L 20553238 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-405 624 chr2L 20568664 20568680 chr2L 20569074 20569091 X-element 4 409 5.5 4.0 4.8 0.7 427 chr2L 20568664 intron CR45347 + chr2L 20568878 intron CR45347 + chr2L 20569091 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-405 625 chr2L 20576201 20576249 chr2L 20583689 20583737 blood 6 7487 2.0 3.0 2.5 1.7 7536 chr2L 20576201 intergenic CR45347 + chr2L 20579969 intergenic not near genes chr2L 20583737 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-405 626 chr2L 20611238 20611267 chr2L 20611321 20611361 6 98 2.0 4.5 3.2 1.4 123 chr2L 20611238 intron CR44909 - chr2L 20611300 intron CR44909 - chr2L 20611361 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-405 627 chr2L 20639481 20639531 chr2L 20639777 20639827 INE-1 5 293 16.0 11.5 13.8 0.3 346 chr2L 20639481 intergenic not near genes chr2L 20639654 intergenic CG31680 + chr2L 20639827 intergenic CG31680 + chr2L_5_20635001 chr2L_20635001 RAL-405 628 chr2L 20643322 20643333 chr2L 20643474 20643480 4 151 4.5 8.5 6.5 0.5 158 chr2L 20643322 intergenic phr6-4 -,CG17470 - chr2L 20643401 3` UTR phr6-4 - chr2L 20643480 3` UTR phr6-4 - chr2L_4_20640001 chr2L_20640001 RAL-405 629 chr2L 20668677 20668681 chr2L 20668773 20668777 5 96 14.0 10.5 12.2 0.4 100 chr2L 20668677 intron CG31678 - chr2L 20668727 intron CG31678 - chr2L 20668777 intron CG31678 - chr2L_5_20665001 chr2L_20665001 RAL-405 630 chr2L 20668702 20668714 chr2L 20668768 20668810 8 88 10.0 10.0 10.0 0.7 108 chr2L 20668702 intron CG31678 - chr2L 20668756 intron CG31678 - chr2L 20668810 intron CG31678 - chr2L_8_20665001 chr2L_20665001 RAL-405 631 chr2L 20669945 20669980 chr2L 20670040 20670080 8 94 9.5 14.5 12.0 0.6 135 chr2L 20669945 intron CG31678 - chr2L 20670012 intron CG31678 - chr2L 20670080 intron CG31678 - chr2L_8_20670001 chr2L_20670001 RAL-405 632 chr2L 20778216 20778267 chr2L 20778319 20778329 8 89 7.0 7.5 7.2 1.0 113 chr2L 20778216 intron cad + chr2L 20778272 intron cad + chr2L 20778329 intron cad + chr2L_8_20775001 chr2L_20775001 RAL-405 633 chr2L 20783469 20783508 chr2L 20783571 20783599 4 104 21.0 24.5 22.8 0.2 130 chr2L 20783469 intergenic cad + chr2L 20783534 intergenic cad + chr2L 20783599 intergenic cad + chr2L_4_20780001 chr2L_20780001 RAL-405 634 chr2L 20803173 20803217 chr2L 20803390 20803434 6 217 19.0 15.0 17.0 0.3 261 chr2L 20803173 intron CG9328 + chr2L 20803304 intron CG9328 + chr2L 20803434 intron CG9328 + chr2L_6_20800001 chr2L_20800001 RAL-405 635 chr2L 20818494 20818538 chr2L 20818595 20818635 8 96 12.0 7.5 9.8 0.7 141 chr2L 20818494 exon CheB38a - chr2L 20818564 intergenic CheB38a - chr2L 20818635 intergenic CheB38a - chr2L_8_20815001 chr2L_20815001 RAL-405 636 chr2L 20891520 20891546 chr2L 20896640 20896666 jockey 10 5119 2.0 5.5 3.8 2.1 5146 chr2L 20891520 intron,intron CG43739 -,sky - chr2L 20894093 intron,intron CG43739 -,sky - chr2L 20896666 intron,intron CG43739 -,sky - chr2L_10_20890001 chr2L_20890001 RAL-405 637 chr2L 20906807 20906853 chr2L 20907010 20907056 9 200 7.5 6.5 7.0 1.1 249 chr2L 20906807 intron,intron CG43739 -,sky - chr2L 20906932 intron,intron CG43739 -,sky - chr2L 20907056 intron,intron CG43739 -,sky - chr2L_9_20905001 chr2L_20905001 RAL-405 638 chr2L 20943049 20943079 chr2L 20943867 20943902 4 819 3.5 24.0 13.8 0.3 853 chr2L 20943049 intergenic not near genes chr2L 20943476 intergenic not near genes chr2L 20943902 intergenic not near genes chr2L_4_20940001 chr2L_20940001 RAL-405 639 chr2L 20946925 20946961 chr2L 20947032 20947063 9 100 11.0 7.5 9.2 0.9 138 chr2L 20946925 intergenic CR44606 - chr2L 20946994 intergenic CR44606 - chr2L 20947063 intergenic CR44606 - chr2L_9_20945001 chr2L_20945001 RAL-405 640 chr2L 20967065 20967106 chr2L 20967171 20967212 9 99 7.5 11.5 9.5 0.9 147 chr2L 20967065 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967212 3` UTR CG42238 - chr2L_9_20965001 chr2L_20965001 RAL-405 641 chr2L 20976629 20976677 chr2L 20981464 20981465 X-element 15 4825 5.5 4.5 5.0 2.5 4836 chr2L 20976629 intron CG42238 - chr2L 20979047 intron CG42238 - chr2L 20981465 intron CG42238 - chr2L_15_20975001 chr2L_20975001 RAL-405 642 chr2L 20984754 20984772 chr2L 20984831 20984849 6 92 7.5 8.0 7.8 0.7 95 chr2L 20984754 intron CG42238 - chr2L 20984802 intron CG42238 - chr2L 20984849 intron CG42238 - chr2L_6_20980001 chr2L_20980001 RAL-405 643 chr2L 20986891 20986923 chr2L 20987242 20987280 12 356 6.0 5.5 5.8 1.8 389 chr2L 20986891 intron CG42238 - chr2L 20987086 intron CG42238 - chr2L 20987280 intron CG42238 - chr2L_12_20985001 chr2L_20985001 RAL-405 644 chr2L 20991030 20991055 chr2L 20991128 20991153 6 94 7.5 9.5 8.5 0.6 123 chr2L 20991030 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991153 intron CG42238 - chr2L_6_20990001 chr2L_20990001 RAL-405 645 chr2L 21020268 21020301 chr2L 21023960 21023988 NOF 5 3690 6.5 3.5 5.0 0.8 3720 chr2L 21020268 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-405 646 chr2L 21041141 21041143 chr2L 21049411 21049419 Tirant 4 8274 6.5 7.0 6.8 0.5 8278 chr2L 21041141 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049419 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-405 647 chr2L 21041145 21041168 chr2L 21049399 21049432 Tirant 9 8262 3.0 5.0 4.0 1.8 8287 chr2L 21041145 intron CG42238 - chr2L 21045288 intron CG42238 - chr2L 21049432 intron CG42238 - chr2L_9_21045001 chr2L_21045001 RAL-405 648 chr2L 21113679 21113714 chr2L 21113781 21113827 9 110 12.0 9.5 10.8 0.8 148 chr2L 21113679 intron Nhe2 + chr2L 21113753 intron Nhe2 + chr2L 21113827 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-405 649 chr2L 21119271 21119296 chr2L 21119375 21119400 4 102 24.5 15.0 19.8 0.2 129 chr2L 21119271 intron Nhe2 + chr2L 21119336 intron Nhe2 + chr2L 21119400 intron Nhe2 + chr2L_4_21115001 chr2L_21115001 RAL-405 650 chr2L 21246517 21246530 chr2L 21246621 21246635 4 110 7.5 10.5 9.0 0.4 118 chr2L 21246517 intron Hr39 + chr2L 21246576 intron Hr39 + chr2L 21246635 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-405 651 chr2L 21286583 21286633 chr2L 21286682 21286719 20 93 6.0 7.0 6.5 2.7 136 chr2L 21286583 exon Mio - chr2L 21286651 intron Mio - chr2L 21286719 intron Mio - chr2L_20_21285001 chr2L_21285001 RAL-405 652 chr2L 21347533 21347575 chr2L 21355025 21355025 blood 9 7486 14.5 8.0 11.2 0.7 7492 chr2L 21347533 intron Tsp39D + chr2L 21351279 intron Tsp39D + chr2L 21355025 intron Tsp39D + chr2L_9_21350001 chr2L_21350001 RAL-405 653 chr2L 21355592 21355638 chr2L 21355757 21355778 5 153 9.5 11.5 10.5 0.4 186 chr2L 21355592 exon Tsp39D + chr2L 21355685 intron Tsp39D + chr2L 21355778 intron Tsp39D + chr2L_5_21355001 chr2L_21355001 RAL-405 654 chr2L 21597025 21597063 chr2L 21604784 21604821 roo 12 7759 4.5 4.0 4.2 2.3 7796 chr2L 21597025 intergenic not near genes chr2L 21600923 intergenic not near genes chr2L 21604821 intergenic not near genes chr2L_12_21600001 chr2L_21600001 RAL-405 655 chr2L 21691809 21691816 chr2L 21698299 21698306 Burdock 4 6489 21.0 0.0 10.5 0.3 6497 chr2L 21691809 intron CG31619 + chr2L 21695058 intron CG31619 + chr2L 21698306 intron CG31619 + chr2L_4_21695001 chr2L_21695001 RAL-405 656 chr2L 21691819 21691858 chr2L 21698296 21698318 Burdock 17 6481 10.5 0.0 5.2 2.7 6499 chr2L 21691819 intron CG31619 + chr2L 21695068 intron CG31619 + chr2L 21698318 intron CG31619 + chr2L_17_21695001 chr2L_21695001 RAL-405 657 chr2L 21754657 21754689 chr2L 21754758 21754790 6 97 31.0 34.5 32.8 0.2 133 chr2L 21754657 intron step - chr2L 21754724 intron step - chr2L 21754790 intron step - chr2L_6_21750001 chr2L_21750001 RAL-405 658 chr2L 21788729 21788760 chr2L 21788827 21788858 5 98 11.5 16.5 14.0 0.3 129 chr2L 21788729 intron CG31612 - chr2L 21788794 intron CG31612 - chr2L 21788858 intron CG31612 - chr2L_5_21785001 chr2L_21785001 RAL-405 659 chr2L 21838986 21839028 chr2L 21839082 21839124 13 89 16.0 14.0 15.0 0.8 138 chr2L 21838986 intergenic not near genes chr2L 21839055 intergenic not near genes chr2L 21839124 intergenic not near genes chr2L_13_21835001 chr2L_21835001 RAL-405 660 chr2L 21852355 21852393 chr2L 21852690 21852728 6 335 13.0 9.0 11.0 0.5 373 chr2L 21852355 intergenic not near genes chr2L 21852542 intergenic not near genes chr2L 21852728 intergenic not near genes chr2L_6_21850001 chr2L_21850001 RAL-405 661 chr2L 21855461 21855514 chr2L 21855567 21855607 6 98 20.0 21.0 20.5 0.3 146 chr2L 21855461 intron CR44917 + chr2L 21855534 intron CR44917 + chr2L 21855607 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-405 662 chr2L 21898827 21898872 chr2L 21898975 21899010 6 145 14.0 14.0 14.0 0.4 183 chr2L 21898827 intergenic not near genes chr2L 21898918 intergenic not near genes chr2L 21899010 intergenic not near genes chr2L_6_21895001 chr2L_21895001 RAL-405 663 chr2L 21901397 21901426 chr2L 21901495 21901524 4 98 18.5 18.0 18.2 0.2 127 chr2L 21901397 intergenic not near genes chr2L 21901460 intergenic not near genes chr2L 21901524 intergenic not near genes chr2L_4_21900001 chr2L_21900001 RAL-405 664 chr2L 21953792 21953843 chr2L 21954699 21954724 13 886 33.5 29.0 31.2 0.4 932 chr2L 21953792 intergenic not near genes chr2L 21954258 intergenic not near genes chr2L 21954724 intergenic not near genes chr2L_13_21950001 chr2L_21950001 RAL-405 665 chr2L 21981673 21981705 chr2L 21990848 21990855 roo 8 9177 5.0 4.0 4.5 1.5 9182 chr2L 21981673 exon CG2528 - chr2L 21986264 intron CG2528 - chr2L 21990855 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-405 666 chr2L 22047239 22047257 chr2L 22047384 22047402 5 144 4.5 6.0 5.2 0.8 163 chr2L 22047239 intergenic not near genes chr2L 22047320 intergenic not near genes chr2L 22047402 intergenic not near genes chr2L_5_22045001 chr2L_22045001 RAL-405 667 chr2L 22164961 22165000 chr2L 22165095 22165122 13 142 10.0 13.0 11.5 1.0 161 chr2L 22164961 3` UTR CG42748 + chr2L 22165042 3` UTR CG42748 + chr2L 22165122 3` UTR CG42748 + chr2L_13_22165001 chr2L_22165001 RAL-405 668 chr2L 22165498 22165537 chr2L 22165603 22165642 16 100 11.5 14.0 12.8 1.2 144 chr2L 22165498 3` UTR CG42748 + chr2L 22165570 3` UTR CG42748 + chr2L 22165642 3` UTR CG42748 + chr2L_16_22165001 chr2L_22165001 RAL-405 669 chr2L 22197902 22197909 chr2L 22198095 22198128 4 210 3.5 7.5 5.5 0.6 226 chr2L 22197902 intron Ir40a - chr2L 22198015 intron Ir40a - chr2L 22198128 intron Ir40a - chr2L_4_22195001 chr2L_22195001 RAL-405 670 chr2L 22212131 22212159 chr2L 22212698 22212726 8 566 19.0 16.0 17.5 0.4 595 chr2L 22212131 intron Ir40a - chr2L 22212428 intron Ir40a - chr2L 22212726 exon Ir40a - chr2L_8_22210001 chr2L_22210001 RAL-405 671 chr2L 22350249 22350295 chr2L 22350365 22350387 5 108 8.0 5.5 6.8 0.6 138 chr2L 22350249 intron CG17018 + chr2L 22350318 intron CG17018 + chr2L 22350387 intron CG17018 + chr2L_5_22350001 chr2L_22350001 RAL-405 672 chr2L 22545981 22546010 chr2L 22546077 22546111 5 107 13.5 9.0 11.2 0.4 130 chr2L 22545981 intron CG17490 + chr2L 22546046 intron CG17490 + chr2L 22546111 intron CG17490 + chr2L_5_22545001 chr2L_22545001 RAL-405 673 chr2L 22548923 22548936 chr2L 22550168 22550178 1360 4 1244 0.5 11.5 6.0 0.6 1255 chr2L 22548923 intergenic CG17490 + chr2L 22549550 intergenic not near genes chr2L 22550178 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-405 674 chr2L 22558153 22558167 chr2L 22558219 22558247 5 77 12.0 15.5 13.8 0.3 94 chr2L 22558153 intergenic not near genes chr2L 22558200 intergenic not near genes chr2L 22558247 intergenic not near genes chr2L_5_22555001 chr2L_22555001 RAL-405 675 chr2L 22558168 22558170 chr2L 22558218 22558259 4 73 12.5 15.0 13.8 0.3 91 chr2L 22558168 intergenic not near genes chr2L 22558214 intergenic not near genes chr2L 22558259 intergenic not near genes chr2L_4_22555001 chr2L_22555001 RAL-405 676 chr2L 22558171 22558171 chr2L 22558213 22558240 4 51 12.0 13.0 12.5 0.3 69 chr2L 22558171 intergenic not near genes chr2L 22558206 intergenic not near genes chr2L 22558240 intergenic not near genes chr2L_4_22555001 chr2L_22555001 RAL-405 677 chr2L 22558371 22558405 chr2L 22558702 22558736 6 327 15.0 8.5 11.8 0.5 365 chr2L 22558371 intergenic not near genes chr2L 22558554 intergenic not near genes chr2L 22558736 intergenic not near genes chr2L_6_22555001 chr2L_22555001 RAL-405 678 chr2L 22558408 22558418 chr2L 22558699 22558746 7 311 11.5 8.0 9.8 0.6 338 chr2L 22558408 intergenic not near genes chr2L 22558577 intergenic not near genes chr2L 22558746 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-405 679 chr2L 22581949 22581997 chr2L 22583758 22583788 S-element 14 1804 10.0 7.0 8.5 1.5 1839 chr2L 22581949 intron CG17494 + chr2L 22582868 intron CG17494 + chr2L 22583788 intron CG17494 + chr2L_14_22580001 chr2L_22580001 RAL-405 680 chr2L 22679820 22679826 chr2L 22684563 22684591 F-element 5 4763 8.5 4.0 6.2 0.7 4771 chr2L 22679820 intron CG40006 - chr2L 22682206 intron CG40006 - chr2L 22684591 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-405 681 chr2L 22706811 22706838 chr2L 22706919 22706961 4 119 11.0 15.0 13.0 0.3 150 chr2L 22706811 intron CG40006 - chr2L 22706886 intron CG40006 - chr2L 22706961 intron CG40006 - chr2L_4_22705001 chr2L_22705001 RAL-405 682 chr2L 22776400 22776451 chr2L 22778209 22778260 S-element 19 1806 4.5 7.0 5.8 2.8 1860 chr2L 22776400 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778260 intergenic not near genes chr2L_19_22775001 chr2L_22775001 RAL-405 683 chr2R 1516586 1516594 chr2R 1521334 1521342 1731 9 4747 68.5 40.0 54.2 0.2 4756 chr2R 1516586 exon Maf1 - chr2R 1518964 intron Maf1 - chr2R 1521342 5` UTR Maf1 - chr2R_9_1515001 chr2R_1515001 RAL-405 684 chr2R 1516595 1516603 chr2R 1521333 1521351 1731 6 4744 60.5 40.0 50.2 0.1 4756 chr2R 1516595 exon Maf1 - chr2R 1518973 intron Maf1 - chr2R 1521351 5` UTR Maf1 - chr2R_6_1515001 chr2R_1515001 RAL-405 685 chr2R 1954046 1954071 chr2R 1954477 1954527 6 437 19.0 25.0 22.0 0.3 481 chr2R 1954046 intron CG17684 - chr2R 1954286 intron CG17684 - chr2R 1954527 intron CG17684 - chr2R_6_1950001 chr2R_1950001 RAL-405 686 chr2R 2498972 2499015 chr2R 2508134 2508182 roo 10 9160 4.5 8.0 6.2 1.4 9210 chr2R 2498972 intron MFS17 - chr2R 2503577 intron MFS17 - chr2R 2508182 intron MFS17 - chr2R_10_2500001 chr2R_2500001 RAL-405 687 chr2R 3144071 3144106 chr2R 3393369 3393403 Doc 6 249292 18.0 16.0 17.0 0.3 249332 chr2R 3144071 intron CG42596 + chr2R 3268737 intergenic not near genes chr2R 3393403 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-405 688 chr2R 3532622 3532642 chr2R 3536060 3536100 Doc 9 3457 5.0 6.0 5.5 1.4 3478 chr2R 3532622 intergenic not near genes chr2R 3534361 intergenic not near genes chr2R 3536100 intergenic not near genes chr2R_9_3530001 chr2R_3530001 RAL-405 689 chr2R 4604541 4604580 chr2R 4604630 4604668 9 93 6.5 5.5 6.0 1.3 127 chr2R 4604541 intron p120ctn + chr2R 4604604 intron p120ctn + chr2R 4604668 intron p120ctn + chr2R_9_4600001 chr2R_4600001 RAL-405 690 chr2R 4622966 4622988 chr2R 4624110 4624144 1360 4 1154 2.0 7.0 4.5 0.7 1178 chr2R 4622966 intergenic CR44101 - chr2R 4623555 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-405 691 chr2R 4624642 4624671 chr2R 4626544 4626596 Bica 6 1913 8.5 8.0 8.2 0.7 1954 chr2R 4624642 intergenic not near genes chr2R 4625619 intergenic not near genes chr2R 4626596 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-405 692 chr2R 4634171 4634184 chr2R 4634243 4634280 6 88 9.5 8.5 9.0 0.6 109 chr2R 4634171 intergenic not near genes chr2R 4634226 intergenic not near genes chr2R 4634280 intergenic not near genes chr2R_6_4630001 chr2R_4630001 RAL-405 693 chr2R 4750326 4750374 chr2R 4751496 4751522 1360 5 1168 8.0 5.5 6.8 0.6 1196 chr2R 4750326 intron conu + chr2R 4750924 intron conu + chr2R 4751522 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-405 694 chr2R 4838852 4838900 chr2R 4840395 4840443 transib2 8 1542 9.0 4.0 6.5 1.1 1591 chr2R 4838852 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840443 intergenic not near genes chr2R_8_4835001 chr2R_4835001 RAL-405 695 chr2R 4878667 4878704 chr2R 4887663 4887710 X-element 12 9000 7.0 12.0 9.5 1.1 9043 chr2R 4878667 intergenic not near genes chr2R 4883188 intergenic not near genes chr2R 4887710 intergenic not near genes chr2R_12_4880001 chr2R_4880001 RAL-405 696 chr2R 4996941 4996972 chr2R 4997020 4997067 7 88 11.0 14.0 12.5 0.5 126 chr2R 4996941 intron Ir41a + chr2R 4997004 intron Ir41a + chr2R 4997067 intron Ir41a + chr2R_7_4995001 chr2R_4995001 RAL-405 697 chr2R 5019269 5019280 chr2R 5019365 5019386 7 102 10.0 3.5 6.8 0.9 117 chr2R 5019269 intron Ir41a + chr2R 5019328 intron Ir41a + chr2R 5019386 intron Ir41a + chr2R_7_5015001 chr2R_5015001 RAL-405 698 chr2R 5019284 5019311 chr2R 5019364 5019417 5 96 5.5 3.5 4.5 0.9 133 chr2R 5019284 intron Ir41a + chr2R 5019350 intron Ir41a + chr2R 5019417 intron Ir41a + chr2R_5_5015001 chr2R_5015001 RAL-405 699 chr2R 5038518 5038537 chr2R 5039327 5039334 5 806 10.0 3.5 6.8 0.6 816 chr2R 5038518 intergenic not near genes chr2R 5038926 intergenic not near genes chr2R 5039334 intergenic not near genes chr2R_5_5035001 chr2R_5035001 RAL-405 700 chr2R 5075928 5075982 chr2R 5076080 5076124 4 146 37.5 41.5 39.5 0.1 196 chr2R 5075928 intergenic not near genes chr2R 5076026 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-405 701 chr2R 5080804 5080819 chr2R 5080880 5080913 8 102 3.0 3.5 3.2 1.9 109 chr2R 5080804 intergenic not near genes chr2R 5080858 intergenic not near genes chr2R 5080913 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-405 702 chr2R 5087181 5087211 chr2R 5087278 5087296 4 99 9.0 7.5 8.2 0.4 115 chr2R 5087181 intergenic not near genes chr2R 5087238 intergenic not near genes chr2R 5087296 intergenic not near genes chr2R_4_5085001 chr2R_5085001 RAL-405 703 chr2R 5192706 5192901 chr2R 5192803 5193011 5 112 16.5 25.0 20.8 0.2 305 chr2R 5192706 intron Nipped-A - chr2R 5192858 intron Nipped-A - chr2R 5193011 intron Nipped-A - chr2R_5_5190001 chr2R_5190001 RAL-405 704 chr2R 5237335 5237372 chr2R 5237437 5237468 7 98 3.0 4.5 3.8 1.5 133 chr2R 5237335 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237468 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-405 705 chr2R 5241207 5241248 chr2R 5241298 5241307 5 85 15.5 12.0 13.8 0.3 100 chr2R 5241207 intron Nipped-A - chr2R 5241257 intron Nipped-A - chr2R 5241307 intron Nipped-A - chr2R_5_5240001 chr2R_5240001 RAL-405 706 chr2R 5266110 5266151 chr2R 5266203 5266209 8 91 20.0 28.5 24.2 0.3 99 chr2R 5266110 intron d4 + chr2R 5266160 intron d4 + chr2R 5266209 intron d4 + chr2R_8_5265001 chr2R_5265001 RAL-405 707 chr2R 5303474 5303522 chr2R 5303581 5303630 6 104 15.0 20.0 17.5 0.3 156 chr2R 5303474 intergenic not near genes chr2R 5303552 intergenic not near genes chr2R 5303630 intergenic not near genes chr2R_6_5300001 chr2R_5300001 RAL-405 708 chr2R 5342578 5342838 chr2R 5342665 5342955 5 107 24.0 24.5 24.2 0.2 377 chr2R 5342578 intergenic not near genes chr2R 5342766 intergenic not near genes chr2R 5342955 intergenic not near genes chr2R_5_5340001 chr2R_5340001 RAL-405 709 chr2R 5415432 5415474 chr2R 5415519 5415559 13 93 8.5 11.0 9.8 1.2 127 chr2R 5415432 intron laccase2 + chr2R 5415496 intron laccase2 + chr2R 5415559 intron laccase2 + chr2R_13_5415001 chr2R_5415001 RAL-405 710 chr2R 5417974 5417984 chr2R 5420626 5420636 Burdock 5 2652 18.0 8.0 13.0 0.4 2662 chr2R 5417974 intron laccase2 + chr2R 5419305 intron laccase2 + chr2R 5420636 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-405 711 chr2R 5417988 5418027 chr2R 5420624 5420674 Burdock 20 2639 9.5 6.5 8.0 2.2 2686 chr2R 5417988 intron laccase2 + chr2R 5419331 intron laccase2 + chr2R 5420674 intron laccase2 + chr2R_20_5415001 chr2R_5415001 RAL-405 712 chr2R 5509515 5509540 chr2R 5509614 5509646 8 111 10.5 5.5 8.0 0.9 131 chr2R 5509515 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509646 intron CG30438 + chr2R_8_5505001 chr2R_5505001 RAL-405 713 chr2R 5543198 5543210 chr2R 5547302 5547314 invader1 4 4104 0.0 8.5 4.2 0.8 4116 chr2R 5543198 intron CG30438 + chr2R 5545256 intron CG30438 + chr2R 5547314 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-405 714 chr2R 5543211 5543220 chr2R 5547300 5547319 invader1 4 4098 0.0 8.5 4.2 0.8 4108 chr2R 5543211 intron CG30438 + chr2R 5545265 intron CG30438 + chr2R 5547319 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-405 715 chr2R 5750445 5750453 chr2R 5750543 5750565 4 107 12.5 8.0 10.2 0.4 120 chr2R 5750445 intergenic not near genes chr2R 5750505 intergenic not near genes chr2R 5750565 intergenic not near genes chr2R_4_5750001 chr2R_5750001 RAL-405 716 chr2R 5771470 5771492 chr2R 5771550 5771555 7 84 7.5 5.0 6.2 1.0 85 chr2R 5771470 intron Gp210 + chr2R 5771512 intron Gp210 + chr2R 5771555 intron Gp210 + chr2R_7_5770001 chr2R_5770001 RAL-405 717 chr2R 5772498 5772745 chr2R 5772597 5772878 23 113 14.5 6.5 10.5 2.0 380 chr2R 5772498 3` UTR Gp210 + chr2R 5772688 3` UTR Gp210 + chr2R 5772878 3` UTR Gp210 + chr2R_23_5770001 chr2R_5770001 RAL-405 718 chr2R 5790447 5790494 chr2R 5790552 5790599 11 101 19.5 19.0 19.2 0.5 152 chr2R 5790447 intergenic not near genes chr2R 5790523 intergenic not near genes chr2R 5790599 intergenic not near genes chr2R_11_5790001 chr2R_5790001 RAL-405 719 chr2R 5835924 5835962 chr2R 5836035 5836058 6 112 14.0 13.0 13.5 0.4 134 chr2R 5835924 intron dpr12 + chr2R 5835991 intron dpr12 + chr2R 5836058 intron dpr12 + chr2R_6_5835001 chr2R_5835001 RAL-405 720 chr2R 5869266 5869295 chr2R 5874357 5874382 flea 11 5090 9.5 3.5 6.5 1.5 5116 chr2R 5869266 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874382 intergenic not near genes chr2R_11_5870001 chr2R_5870001 RAL-405 721 chr2R 5869298 5869308 chr2R 5874354 5874389 flea 5 5078 5.5 3.5 4.5 0.9 5091 chr2R 5869298 intergenic not near genes chr2R 5871844 intergenic not near genes chr2R 5874389 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-405 722 chr2R 5885243 5885368 chr2R 5885316 5885517 7 107 17.0 16.0 16.5 0.4 274 chr2R 5885243 5` UTR CR44125 + chr2R 5885380 5` UTR CR44125 + chr2R 5885517 5` UTR CR44125 + chr2R_7_5885001 chr2R_5885001 RAL-405 723 chr2R 5939654 5939670 chr2R 5940871 5940882 INE-1 5 1214 3.5 9.5 6.5 0.7 1228 chr2R 5939654 intergenic not near genes chr2R 5940268 intergenic not near genes chr2R 5940882 intergenic not near genes chr2R_5_5940001 chr2R_5940001 RAL-405 724 chr2R 5947919 5947957 chr2R 5948089 5948113 10 165 4.5 1.5 3.0 2.5 194 chr2R 5947919 intergenic not near genes chr2R 5948016 intergenic not near genes chr2R 5948113 intergenic not near genes chr2R_10_5945001 chr2R_5945001 RAL-405 725 chr2R 6088350 6088389 chr2R 6088463 6088502 19 110 8.5 6.5 7.5 2.2 152 chr2R 6088350 intergenic not near genes chr2R 6088426 intergenic not near genes chr2R 6088502 intergenic not near genes chr2R_19_6085001 chr2R_6085001 RAL-405 726 chr2R 6129306 6129349 chr2R 6129404 6129447 6 98 17.0 10.5 13.8 0.4 141 chr2R 6129306 intron EcR - chr2R 6129376 intron EcR - chr2R 6129447 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-405 727 chr2R 6178101 6178133 chr2R 6178247 6178279 5 146 16.0 9.0 12.5 0.4 178 chr2R 6178101 intergenic not near genes chr2R 6178190 intergenic not near genes chr2R 6178279 intergenic not near genes chr2R_5_6175001 chr2R_6175001 RAL-405 728 chr2R 6247820 6247832 chr2R 6247897 6247917 4 90 7.0 12.0 9.5 0.4 97 chr2R 6247820 intron Pld + chr2R 6247868 intron Pld + chr2R 6247917 intron Pld + chr2R_4_6245001 chr2R_6245001 RAL-405 729 chr2R 6494516 6494542 chr2R 6499298 6499324 F-element 5 4777 5.5 4.5 5.0 0.8 4808 chr2R 6494516 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499324 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-405 730 chr2R 6539821 6539828 chr2R 6539964 6539971 4 143 10.0 8.0 9.0 0.4 150 chr2R 6539821 intron jing + chr2R 6539896 intron jing + chr2R 6539971 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-405 731 chr2R 6539833 6539856 chr2R 6539949 6539989 6 137 9.0 6.0 7.5 0.7 156 chr2R 6539833 intron jing + chr2R 6539911 intron jing + chr2R 6539989 intron jing + chr2R_6_6535001 chr2R_6535001 RAL-405 732 chr2R 6546702 6546750 chr2R 6546823 6546860 18 118 12.0 11.5 11.8 1.4 158 chr2R 6546702 intron jing + chr2R 6546781 intron jing + chr2R 6546860 intron jing + chr2R_18_6545001 chr2R_6545001 RAL-405 733 chr2R 6579752 6579802 chr2R 6584858 6584868 flea 22 5097 10.5 6.5 8.5 2.3 5116 chr2R 6579752 intron jing + chr2R 6582310 intron jing + chr2R 6584868 intron jing + chr2R_22_6580001 chr2R_6580001 RAL-405 734 chr2R 6608750 6608790 chr2R 6608963 6608992 7 207 12.5 13.0 12.8 0.5 242 chr2R 6608750 intron jing + chr2R 6608871 intron jing + chr2R 6608992 intron jing + chr2R_7_6605001 chr2R_6605001 RAL-405 735 chr2R 6611708 6611751 chr2R 6611861 6611906 12 153 9.0 10.5 9.8 1.1 198 chr2R 6611708 intron jing + chr2R 6611807 intron jing + chr2R 6611906 intron jing + chr2R_12_6610001 chr2R_6610001 RAL-405 736 chr2R 6633185 6633229 chr2R 6633282 6633326 14 97 7.5 9.0 8.2 1.5 141 chr2R 6633185 intergenic Vha16-1 -,Trap1 - chr2R 6633256 intergenic Vha16-1 -,Trap1 - chr2R 6633326 intergenic Vha16-1 -,Trap1 - chr2R_14_6630001 chr2R_6630001 RAL-405 737 chr2R 6691117 6691145 chr2R 6691216 6691244 6 98 15.0 17.5 16.2 0.3 127 chr2R 6691117 intron CG9422 + chr2R 6691180 intron CG9422 + chr2R 6691244 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-405 738 chr2R 6696598 6696641 chr2R 6696691 6696714 5 89 10.0 7.0 8.5 0.5 116 chr2R 6696598 5` UTR Mob4 - chr2R 6696656 5` UTR Mob4 - chr2R 6696714 intergenic Rab2 +,Mob4 - chr2R_5_6695001 chr2R_6695001 RAL-405 739 chr2R 6699576 6699584 chr2R 6699681 6699689 7 104 12.5 8.0 10.2 0.6 113 chr2R 6699576 intergenic Rab2 + chr2R 6699632 intergenic Rab2 + chr2R 6699689 intergenic Rab2 + chr2R_7_6695001 chr2R_6695001 RAL-405 740 chr2R 6699585 6699620 chr2R 6699675 6699725 17 98 7.0 6.5 6.8 2.2 140 chr2R 6699585 intergenic Rab2 + chr2R 6699655 intergenic Rab2 + chr2R 6699725 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_17_6695001 chr2R_6695001 RAL-405 741 chr2R 6712581 6712598 chr2R 6712693 6712715 4 110 7.5 10.5 9.0 0.4 134 chr2R 6712581 intron,intron CG3409 -,CG45092 - chr2R 6712648 intron,intron CG3409 -,CG45092 - chr2R 6712715 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-405 742 chr2R 6876204 6876242 chr2R 6876306 6876318 6 90 10.0 8.5 9.2 0.6 114 chr2R 6876204 intron,intron CR44169 +,Spn42Da - chr2R 6876261 intron,intron CR44169 +,Spn42Da - chr2R 6876318 5` UTR,intron CR44169 +,Spn42Da - chr2R_6_6875001 chr2R_6875001 RAL-405 743 chr2R 6948064 6948084 chr2R 6948160 6948180 6 96 16.0 10.5 13.2 0.4 116 chr2R 6948064 intron,intron mim -,CheB42c - chr2R 6948122 intron,intron mim -,CheB42c - chr2R 6948180 intron,intron mim -,CheB42c - chr2R_6_6945001 chr2R_6945001 RAL-405 744 chr2R 6948086 6948107 chr2R 6948157 6948197 4 86 10.5 8.5 9.5 0.4 111 chr2R 6948086 intron,intron mim -,CheB42c - chr2R 6948142 intron,intron mim -,CheB42c - chr2R 6948197 intron,intron mim -,CheB42c - chr2R_4_6945001 chr2R_6945001 RAL-405 745 chr2R 6952152 6952184 chr2R 6959752 6959784 opus 9 7598 4.5 9.0 6.8 1.2 7632 chr2R 6952152 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959784 intron,intron mim -,CheB42c - chr2R_9_6955001 chr2R_6955001 RAL-405 746 chr2R 6962439 6962476 chr2R 6962806 6962848 10 374 15.5 13.0 14.2 0.7 409 chr2R 6962439 intron,intron mim -,CheB42c - chr2R 6962644 intron,intron mim -,CheB42c - chr2R 6962848 intron,intron mim -,CheB42c - chr2R_10_6960001 chr2R_6960001 RAL-405 747 chr2R 6964269 6964274 chr2R 6964366 6964371 4 97 23.5 22.5 23.0 0.2 102 chr2R 6964269 intron,intron mim -,CheB42c - chr2R 6964320 intron,intron mim -,CheB42c - chr2R 6964371 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-405 748 chr2R 6964276 6964317 chr2R 6964363 6964414 6 91 24.0 23.5 23.8 0.2 138 chr2R 6964276 intron,intron mim -,CheB42c - chr2R 6964345 intron,intron mim -,CheB42c - chr2R 6964414 intron,intron mim -,CheB42c - chr2R_6_6960001 chr2R_6960001 RAL-405 749 chr2R 6978813 6978835 chr2R 6978975 6978992 7 160 11.5 15.0 13.2 0.5 179 chr2R 6978813 intron vimar - chr2R 6978902 intron vimar - chr2R 6978992 intron vimar - chr2R_7_6975001 chr2R_6975001 RAL-405 750 chr2R 7099689 7099710 chr2R 7099784 7099801 5 92 9.0 11.0 10.0 0.5 112 chr2R 7099689 intron esn + chr2R 7099745 intron esn + chr2R 7099801 intron esn + chr2R_5_7095001 chr2R_7095001 RAL-405 751 chr2R 7102637 7102671 chr2R 7102752 7102763 6 114 5.5 13.0 9.2 0.6 126 chr2R 7102637 intron esn + chr2R 7102700 intron esn + chr2R 7102763 intron esn + chr2R_6_7100001 chr2R_7100001 RAL-405 752 chr2R 7129205 7129234 chr2R 7132855 7132884 4 3653 16.0 22.5 19.2 0.2 3679 chr2R 7129205 exon Cyp9b1 - chr2R 7131044 exon Cyp9b2 - chr2R 7132884 intergenic not near genes chr2R_4_7130001 chr2R_7130001 RAL-405 753 chr2R 7196561 7196591 chr2R 7201356 7201386 F-element 11 4793 8.0 0.5 4.2 2.1 4825 chr2R 7196561 intron pk + chr2R 7198974 intron pk + chr2R 7201386 intron pk + chr2R_11_7195001 chr2R_7195001 RAL-405 754 chr2R 7209865 7209871 chr2R 7217637 7217652 roo 5 7779 2.0 6.5 4.2 1.0 7787 chr2R 7209865 intron pk + chr2R 7213758 intron pk + chr2R 7217652 intron pk + chr2R_5_7210001 chr2R_7210001 RAL-405 755 chr2R 7328132 7328145 chr2R 7328247 7328275 4 122 12.0 13.5 12.8 0.3 143 chr2R 7328132 intron,intron Dscam1 -,CR45129 + chr2R 7328204 intron,intron Dscam1 -,CR45129 + chr2R 7328275 intron,intron Dscam1 -,CR45129 + chr2R_4_7325001 chr2R_7325001 RAL-405 756 chr2R 7353368 7353419 chr2R 7353494 7353533 6 111 3.5 4.5 4.0 1.2 165 chr2R 7353368 intron Dscam1 - chr2R 7353450 intron Dscam1 - chr2R 7353533 intron Dscam1 - chr2R_6_7350001 chr2R_7350001 RAL-405 757 chr2R 7368008 7368052 chr2R 7368131 7368131 8 119 7.5 11.0 9.2 0.8 123 chr2R 7368008 intron Dscam1 - chr2R 7368070 intron Dscam1 - chr2R 7368131 intron Dscam1 - chr2R_8_7365001 chr2R_7365001 RAL-405 758 chr2R 7417890 7418164 chr2R 7417991 7418225 10 96 18.5 18.0 18.2 0.5 335 chr2R 7417890 intergenic not near genes chr2R 7418058 intergenic not near genes chr2R 7418225 intergenic not near genes chr2R_10_7415001 chr2R_7415001 RAL-405 759 chr2R 7459259 7459311 chr2R 7459367 7459389 10 97 5.0 3.0 4.0 2.0 130 chr2R 7459259 intergenic Inos -,CG11141 - chr2R 7459324 intergenic CG11141 -,Inos - chr2R 7459389 intergenic CG11141 - chr2R_10_7455001 chr2R_7455001 RAL-405 760 chr2R 7608397 7608439 chr2R 7613609 7613633 I-element 9 5211 6.0 4.0 5.0 1.5 5236 chr2R 7608397 intron CG1358 - chr2R 7611015 intron CG1358 - chr2R 7613633 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-405 761 chr2R 7642847 7642890 chr2R 7642947 7642990 16 97 15.5 15.5 15.5 1.0 143 chr2R 7642847 intron CG43340 + chr2R 7642918 intron CG43340 + chr2R 7642990 intron CG43340 + chr2R_16_7640001 chr2R_7640001 RAL-405 762 chr2R 7692006 7692038 chr2R 7692094 7692139 9 97 5.5 4.5 5.0 1.5 133 chr2R 7692006 intron CG1399 - chr2R 7692072 intron CG1399 - chr2R 7692139 intron CG1399 - chr2R_9_7690001 chr2R_7690001 RAL-405 763 chr2R 7714092 7714112 chr2R 7714155 7714198 9 86 21.0 20.0 20.5 0.4 106 chr2R 7714092 exon CG1942 + chr2R 7714145 3` UTR CG1942 + chr2R 7714198 intergenic CG1942 + chr2R_9_7710001 chr2R_7710001 RAL-405 764 chr2R 7743471 7743513 chr2R 7743572 7743584 4 90 11.5 9.5 10.5 0.3 113 chr2R 7743471 intron,intron CG30497 -,CG45093 - chr2R 7743528 intron,intron CG30497 -,CG45093 - chr2R 7743584 intron,intron CG30497 -,CG45093 - chr2R_4_7740001 chr2R_7740001 RAL-405 765 chr2R 7775295 7775326 chr2R 7775405 7775436 4 105 14.5 12.0 13.2 0.3 141 chr2R 7775295 intron,intron CG30497 -,CG45093 - chr2R 7775366 intron,intron CG30497 -,CG45093 - chr2R 7775436 intron,intron CG30497 -,CG45093 - chr2R_4_7775001 chr2R_7775001 RAL-405 766 chr2R 7812264 7812270 chr2R 7812324 7812366 5 82 12.5 10.5 11.5 0.4 102 chr2R 7812264 intergenic CG1550 -,CG1882 + chr2R 7812315 intergenic CG1882 +,CG1550 - chr2R 7812366 intergenic CG1882 +,CG1550 - chr2R_5_7810001 chr2R_7810001 RAL-405 767 chr2R 7815654 7815690 chr2R 7822143 7822174 Burdock 11 6486 5.0 7.5 6.2 1.5 6520 chr2R 7815654 intergenic CG1882 + chr2R 7818914 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_11_7815001 chr2R_7815001 RAL-405 768 chr2R 7842176 7842228 chr2R 7842283 7842295 8 96 9.0 6.0 7.5 0.9 119 chr2R 7842176 intron Dgk - chr2R 7842236 intron Dgk - chr2R 7842295 intron Dgk - chr2R_8_7840001 chr2R_7840001 RAL-405 769 chr2R 7926910 7926934 chr2R 7927006 7927025 4 93 11.0 15.5 13.2 0.3 115 chr2R 7926910 intron CG8791 + chr2R 7926968 intron CG8791 + chr2R 7927025 intron CG8791 + chr2R_4_7925001 chr2R_7925001 RAL-405 770 chr2R 8018106 8018147 chr2R 8018219 8018255 9 110 12.5 9.5 11.0 0.8 149 chr2R 8018106 intergenic not near genes chr2R 8018180 intergenic not near genes chr2R 8018255 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-405 771 chr2R 8076692 8076702 chr2R 8076787 8076802 6 98 9.5 16.0 12.8 0.4 110 chr2R 8076692 intron lig + chr2R 8076747 intron lig + chr2R 8076802 intron lig + chr2R_6_8075001 chr2R_8075001 RAL-405 772 chr2R 8089256 8089265 chr2R 8089342 8089371 5 99 9.0 5.0 7.0 0.6 115 chr2R 8089256 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-405 773 chr2R 8089267 8089280 chr2R 8089341 8089381 5 97 7.5 4.5 6.0 0.7 114 chr2R 8089267 3` UTR sut2 + chr2R 8089324 intergenic sut2 +,sut3 + chr2R 8089381 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-405 774 chr2R 8160921 8160945 chr2R 8161026 8161043 1360 4 104 10.5 12.0 11.2 0.3 122 chr2R 8160921 exon CG8708 - chr2R 8160982 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-405 775 chr2R 8236016 8236064 chr2R 8236117 8236157 17 97 4.0 2.0 3.0 4.2 141 chr2R 8236016 intergenic not near genes chr2R 8236086 intergenic not near genes chr2R 8236157 intergenic not near genes chr2R_17_8235001 chr2R_8235001 RAL-405 776 chr2R 8330845 8330889 chr2R 8331351 8331388 roo 14 505 3.0 8.0 5.5 2.2 543 chr2R 8330845 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331388 intron pdm3 + chr2R_14_8330001 chr2R_8330001 RAL-405 777 chr2R 8355232 8355274 chr2R 8355331 8355373 9 102 11.5 12.0 11.8 0.7 141 chr2R 8355232 intron pdm3 + chr2R 8355302 intron pdm3 + chr2R 8355373 intron pdm3 + chr2R_9_8355001 chr2R_8355001 RAL-405 778 chr2R 8397345 8397359 chr2R 8397441 8397455 4 95 12.5 18.0 15.2 0.2 110 chr2R 8397345 exon CG2121 - chr2R 8397400 intron CG2121 - chr2R 8397455 intron CG2121 - chr2R_4_8395001 chr2R_8395001 RAL-405 779 chr2R 8452880 8452935 chr2R 8452981 8453009 14 90 12.5 16.0 14.2 0.9 129 chr2R 8452880 intergenic not near genes chr2R 8452944 intergenic not near genes chr2R 8453009 intergenic not near genes chr2R_14_8450001 chr2R_8450001 RAL-405 780 chr2R 8453070 8453109 chr2R 8453506 8453545 8 433 16.0 8.5 12.2 0.6 475 chr2R 8453070 intergenic not near genes chr2R 8453308 intergenic Mal-A2 + chr2R 8453545 intergenic Mal-A2 + chr2R_8_8450001 chr2R_8450001 RAL-405 781 chr2R 8480930 8480956 chr2R 8481064 8481100 13 135 17.5 10.5 14.0 0.9 170 chr2R 8480930 intron mtt - chr2R 8481015 intron mtt - chr2R 8481100 intron mtt - chr2R_13_8480001 chr2R_8480001 RAL-405 782 chr2R 8480958 8480968 chr2R 8481062 8481072 4 123 14.5 10.5 12.5 0.3 114 chr2R 8480958 intron mtt - chr2R 8481015 intron mtt - chr2R 8481072 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-405 783 chr2R 8483953 8483988 chr2R 8484049 8484084 6 92 10.0 13.5 11.8 0.5 131 chr2R 8483953 intron mtt - chr2R 8484018 intron mtt - chr2R 8484084 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-405 784 chr2R 8566015 8566058 chr2R 8566987 8567024 1360 4 966 2.5 9.5 6.0 0.6 1009 chr2R 8566015 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567024 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-405 785 chr2R 8612560 8612607 chr2R 8612657 8612704 20 93 6.5 7.0 6.8 2.6 144 chr2R 8612560 intron CG8642 - chr2R 8612632 intron CG8642 - chr2R 8612704 intron CG8642 - chr2R_20_8610001 chr2R_8610001 RAL-405 786 chr2R 8668412 8668448 chr2R 8668520 8668556 8 106 17.0 16.0 16.5 0.5 144 chr2R 8668412 intron Acsl + chr2R 8668484 intron Acsl + chr2R 8668556 intron Acsl + chr2R_8_8665001 chr2R_8665001 RAL-405 787 chr2R 8714712 8714723 chr2R 8714775 8714830 4 83 0.0 4.5 2.2 1.2 118 chr2R 8714712 3` UTR PGRP-SC1b + chr2R 8714771 3` UTR PGRP-SC1b + chr2R 8714830 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-405 788 chr2R 8722757 8722766 chr2R 8723005 8723021 pogo 5 252 6.5 1.0 3.8 1.0 264 chr2R 8722757 intron CG14767 - chr2R 8722889 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-405 789 chr2R 8759739 8759786 chr2R 8759838 8759839 8 87 3.0 0.5 1.8 2.9 100 chr2R 8759739 intergenic CG8740 + chr2R 8759789 intergenic CG8740 + chr2R 8759839 intergenic CG8740 + chr2R_8_8755001 chr2R_8755001 RAL-405 790 chr2R 8777898 8777917 chr2R 8784108 8784128 diver 10 6210 11.5 7.0 9.2 1.0 6230 chr2R 8777898 intergenic not near genes chr2R 8781013 intergenic not near genes chr2R 8784128 intergenic not near genes chr2R_10_8780001 chr2R_8780001 RAL-405 791 chr2R 8777918 8777942 chr2R 8784104 8784153 diver 9 6206 6.5 6.5 6.5 1.2 6235 chr2R 8777918 intergenic not near genes chr2R 8781036 intergenic not near genes chr2R 8784153 intergenic not near genes chr2R_9_8780001 chr2R_8780001 RAL-405 792 chr2R 8808271 8808308 chr2R 8808370 8808392 12 94 4.5 3.0 3.8 2.5 121 chr2R 8808271 intron sns + chr2R 8808332 intron sns + chr2R 8808392 intron sns + chr2R_12_8805001 chr2R_8805001 RAL-405 793 chr2R 8833432 8833450 chr2R 8833509 8833522 5 91 3.5 0.5 2.0 1.7 90 chr2R 8833432 intron sns + chr2R 8833477 intron sns + chr2R 8833522 intron sns + chr2R_5_8830001 chr2R_8830001 RAL-405 794 chr2R 8891363 8891392 chr2R 8891445 8891490 9 93 2.5 2.5 2.5 2.6 127 chr2R 8891363 5` UTR CG8272 - chr2R 8891426 intergenic CG8272 -,Dmn + chr2R 8891490 intergenic CG8272 -,Dmn + chr2R_9_8890001 chr2R_8890001 RAL-405 795 chr2R 8967408 8967705 chr2R 8967570 8967842 31 156 8.5 5.0 6.8 4.0 434 chr2R 8967408 intron CG8216 - chr2R 8967625 intron CG8216 - chr2R 8967842 intron CG8216 - chr2R_31_8965001 chr2R_8965001 RAL-405 796 chr2R 9010890 9010941 chr2R 9011120 9011171 11 228 9.5 3.5 6.5 1.5 281 chr2R 9010890 intron CG8172 - chr2R 9011030 intron CG8172 - chr2R 9011171 intron CG8172 - chr2R_11_9010001 chr2R_9010001 RAL-405 797 chr2R 9031963 9032010 chr2R 9032061 9032108 14 92 3.5 6.0 4.8 2.4 145 chr2R 9031963 intergenic not near genes chr2R 9032036 intergenic not near genes chr2R 9032108 intergenic not near genes chr2R_14_9030001 chr2R_9030001 RAL-405 798 chr2R 9110143 9110167 chr2R 9110236 9110276 6 106 2.5 6.5 4.5 1.1 133 chr2R 9110143 intergenic Pmm45A - chr2R 9110210 intergenic Pmm45A - chr2R 9110276 intergenic not near genes chr2R_6_9110001 chr2R_9110001 RAL-405 799 chr2R 9129977 9130017 chr2R 9130070 9130120 22 98 7.0 6.0 6.5 2.9 143 chr2R 9129977 intron CG18659 - chr2R 9130048 intron CG18659 - chr2R 9130120 intron CG18659 - chr2R_22_9130001 chr2R_9130001 RAL-405 800 chr2R 9151288 9151333 chr2R 9157778 9157818 Burdock 15 6485 3.0 12.0 7.5 1.8 6530 chr2R 9151288 exon CG30345 + chr2R 9154553 intergenic not near genes chr2R 9157818 intergenic CG8008 - chr2R_15_9150001 chr2R_9150001 RAL-405 801 chr2R 9212684 9212722 chr2R 9213185 9213203 roo 8 497 2.5 1.0 1.8 2.9 519 chr2R 9212684 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213203 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-405 802 chr2R 9240268 9240278 chr2R 9241226 9241261 6 969 4.5 3.0 3.8 1.2 993 chr2R 9240268 intron,exon hig -,Cyp4p1 + chr2R 9240764 intron,exon hig -,Cyp4p1 + chr2R 9241261 intron,exon hig -,Cyp4p1 + chr2R_6_9240001 chr2R_9240001 RAL-405 803 chr2R 9258414 9258427 chr2R 9258519 9258537 9 106 13.0 3.5 8.2 1.0 123 chr2R 9258414 intron Pkn - chr2R 9258476 intron Pkn - chr2R 9258537 intron Pkn - chr2R_9_9255001 chr2R_9255001 RAL-405 804 chr2R 9267979 9268009 chr2R 9268061 9268115 13 99 3.0 2.0 2.5 3.7 136 chr2R 9267979 intron Pkn - chr2R 9268047 intron Pkn - chr2R 9268115 intron Pkn - chr2R_13_9265001 chr2R_9265001 RAL-405 805 chr2R 9480079 9480107 chr2R 9490620 9490648 roo 14 10547 6.5 9.5 8.0 1.6 10569 chr2R 9480079 intergenic not near genes chr2R 9485364 intergenic not near genes chr2R 9490648 intergenic not near genes chr2R_14_9485001 chr2R_9485001 RAL-405 806 chr2R 9541620 9541630 chr2R 9541717 9541717 4 94 0.5 7.0 3.8 0.8 97 chr2R 9541620 intergenic brp +,CG1888 - chr2R 9541668 intergenic brp +,CG1888 - chr2R 9541717 intergenic brp +,CG1888 - chr2R_4_9540001 chr2R_9540001 RAL-405 807 chr2R 9541637 9541653 chr2R 9541708 9541745 10 88 0.5 5.0 2.8 2.6 108 chr2R 9541637 intergenic brp +,CG1888 - chr2R 9541691 intergenic brp +,CG1888 - chr2R 9541745 intergenic brp +,CG1888 - chr2R_10_9540001 chr2R_9540001 RAL-405 808 chr2R 9561831 9561844 chr2R 9561914 9561947 4 100 0.0 1.5 0.8 2.2 116 chr2R 9561831 3` UTR,intron CR45281 -,CG1809 + chr2R 9561889 3` UTR,intron CR45281 -,CG1809 + chr2R 9561947 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-405 809 chr2R 9616630 9616639 chr2R 9616752 9616764 4 124 9.5 2.5 6.0 0.6 134 chr2R 9616630 intron Mmp2 - chr2R 9616697 intron Mmp2 - chr2R 9616764 intron Mmp2 - chr2R_4_9615001 chr2R_9615001 RAL-405 810 chr2R 9726599 9726643 chr2R 9734170 9734209 17.6 22 7566 4.0 7.0 5.5 3.4 7610 chr2R 9726599 intron sqa - chr2R 9730404 intron sqa - chr2R 9734209 intron sqa - chr2R_22_9730001 chr2R_9730001 RAL-405 811 chr2R 9869652 9869707 chr2R 9869783 9869838 19 124 4.5 5.0 4.8 3.3 186 chr2R 9869652 intron cbx - chr2R 9869745 intron cbx - chr2R 9869838 intron cbx - chr2R_19_9865001 chr2R_9865001 RAL-405 812 chr2R 9928425 9928436 chr2R 9928555 9928571 6 136 1.0 6.5 3.8 1.2 146 chr2R 9928425 intron Mef2 - chr2R 9928498 intron Mef2 - chr2R 9928571 intron Mef2 - chr2R_6_9925001 chr2R_9925001 RAL-405 813 chr2R 9945431 9945456 chr2R 9945646 9945671 BS 4 216 5.5 3.5 4.5 0.7 240 chr2R 9945431 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945671 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-405 814 chr2R 10005867 10005873 chr2R 10007025 10007058 1360 4 1172 4.0 2.0 3.0 1.0 1191 chr2R 10005867 intron Pka-R2 - chr2R 10006462 intron Pka-R2 - chr2R 10007058 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-405 815 chr2R 10055711 10055762 chr2R 10055807 10055858 13 89 2.0 2.5 2.2 4.1 147 chr2R 10055711 intron magu + chr2R 10055784 intron magu + chr2R 10055858 intron magu + chr2R_13_10055001 chr2R_10055001 RAL-405 816 chr2R 10086919 10086931 chr2R 10087031 10087037 4 112 0.5 8.0 4.2 0.8 118 chr2R 10086919 intron,exon CG2269 +,sut4 - chr2R 10086978 intron,5` UTR CG2269 +,sut4 - chr2R 10087037 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-405 817 chr2R 10095375 10095406 chr2R 10095458 10095481 12 84 5.5 2.0 3.8 2.5 106 chr2R 10095375 3` UTR CG2269 + chr2R 10095428 3` UTR CG2269 + chr2R 10095481 3` UTR CG2269 + chr2R_12_10095001 chr2R_10095001 RAL-405 818 chr2R 10122721 10122750 chr2R 10122951 10122954 8 226 6.0 4.5 5.2 1.3 233 chr2R 10122721 intergenic Ccs - chr2R 10122838 intergenic Ccs - chr2R 10122954 intergenic Ccs - chr2R_8_10120001 chr2R_10120001 RAL-405 819 chr2R 10155850 10155884 chr2R 10155949 10155999 17 109 6.5 5.0 5.8 2.5 149 chr2R 10155850 intron KCNQ - chr2R 10155924 intron,3` UTR KCNQ -,mlt - chr2R 10155999 intron,3` UTR KCNQ -,mlt - chr2R_17_10155001 chr2R_10155001 RAL-405 820 chr2R 10176862 10176912 chr2R 10186049 10186099 roo 26 9184 5.0 5.5 5.2 4.2 9237 chr2R 10176862 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186099 intron KCNQ - chr2R_26_10180001 chr2R_10180001 RAL-405 821 chr2R 10200997 10201022 chr2R 10201093 10201118 9 95 13.5 0.0 6.8 1.2 121 chr2R 10200997 intergenic not near genes chr2R 10201058 intergenic not near genes chr2R 10201118 intergenic not near genes chr2R_9_10200001 chr2R_10200001 RAL-405 822 chr2R 10203620 10203661 chr2R 10203725 10203756 11 102 6.5 2.5 4.5 2.0 136 chr2R 10203620 intergenic not near genes chr2R 10203688 intergenic not near genes chr2R 10203756 intergenic not near genes chr2R_11_10200001 chr2R_10200001 RAL-405 823 chr2R 10216194 10216222 chr2R 10216282 10216320 7 89 3.5 2.5 3.0 1.8 126 chr2R 10216194 intron,intron CG12912 -,Hr46 - chr2R 10216257 intron,intron CG12912 -,Hr46 - chr2R 10216320 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-405 824 chr2R 10225713 10225745 chr2R 10225815 10225825 11 99 2.5 7.0 4.8 1.9 112 chr2R 10225713 intron,intron CG12912 -,Hr46 - chr2R 10225769 intron,intron CG12912 -,Hr46 - chr2R 10225825 intron,intron CG12912 -,Hr46 - chr2R_11_10225001 chr2R_10225001 RAL-405 825 chr2R 10257150 10257189 chr2R 10257251 10257300 15 103 12.0 2.5 7.2 1.8 150 chr2R 10257150 intron CG12911 + chr2R 10257225 intron CG12911 + chr2R 10257300 intron CG12911 + chr2R_15_10255001 chr2R_10255001 RAL-405 826 chr2R 10274806 10274827 chr2R 10274897 10274923 8 92 8.5 0.5 4.5 1.5 117 chr2R 10274806 intron CAP + chr2R 10274864 intron CAP + chr2R 10274923 intron CAP + chr2R_8_10270001 chr2R_10270001 RAL-405 827 chr2R 10318497 10318528 chr2R 10318603 10318634 11 105 5.5 6.0 5.8 1.6 137 chr2R 10318497 intron Ndg + chr2R 10318566 intron Ndg + chr2R 10318634 intron Ndg + chr2R_11_10315001 chr2R_10315001 RAL-405 828 chr2R 10319704 10319738 chr2R 10319816 10319845 6 110 5.0 3.5 4.2 1.2 141 chr2R 10319704 intron Ndg + chr2R 10319774 intron Ndg + chr2R 10319845 intron,3` UTR Ndg +,CG34222 - chr2R_6_10315001 chr2R_10315001 RAL-405 829 chr2R 10322065 10322069 chr2R 10322159 10322171 4 98 4.5 8.0 6.2 0.6 106 chr2R 10322065 3` UTR Ndg + chr2R 10322118 intergenic Ndg + chr2R 10322171 intergenic Ndg + chr2R_4_10320001 chr2R_10320001 RAL-405 830 chr2R 10352655 10352705 chr2R 10352752 10352802 11 89 5.0 7.0 6.0 1.6 147 chr2R 10352655 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352802 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-405 831 chr2R 10354254 10354308 chr2R 10354353 10354392 27 94 7.0 7.5 7.2 3.3 138 chr2R 10354254 intron,3` UTR CG42732 -,CG12907 + chr2R 10354323 intron,3` UTR CG42732 -,CG12907 + chr2R 10354392 intron CG42732 - chr2R_27_10350001 chr2R_10350001 RAL-405 832 chr2R 10363851 10363893 chr2R 10363940 10363987 14 95 5.0 5.5 5.2 2.3 136 chr2R 10363851 intron CG42732 - chr2R 10363919 intron CG42732 - chr2R 10363987 intron CG42732 - chr2R_14_10360001 chr2R_10360001 RAL-405 833 chr2R 10429017 10429035 chr2R 10429103 10429113 6 86 5.0 4.5 4.8 1.0 96 chr2R 10429017 intergenic not near genes chr2R 10429065 intergenic not near genes chr2R 10429113 intergenic not near genes chr2R_6_10425001 chr2R_10425001 RAL-405 834 chr2R 10429036 10429050 chr2R 10429096 10429147 7 80 3.5 3.5 3.5 1.6 111 chr2R 10429036 intergenic not near genes chr2R 10429092 intergenic not near genes chr2R 10429147 intergenic not near genes chr2R_7_10425001 chr2R_10425001 RAL-405 835 chr2R 10454104 10454129 chr2R 10454172 10454225 15 81 6.0 3.0 4.5 2.7 121 chr2R 10454104 intron,intron Galphao +,Cyp49a1 - chr2R 10454164 intron,intron Galphao +,Cyp49a1 - chr2R 10454225 intron,intron Galphao +,Cyp49a1 - chr2R_15_10450001 chr2R_10450001 RAL-405 836 chr2R 10469009 10469056 chr2R 10469155 10469192 18 143 1.0 2.5 1.8 6.4 183 chr2R 10469009 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469192 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-405 837 chr2R 10546544 10546569 chr2R 10546655 10546680 8 111 7.0 5.5 6.2 1.1 136 chr2R 10546544 intergenic not near genes chr2R 10546612 intergenic not near genes chr2R 10546680 intergenic not near genes chr2R_8_10545001 chr2R_10545001 RAL-405 838 chr2R 10546571 10546590 chr2R 10546652 10546701 16 105 3.0 5.0 4.0 3.2 130 chr2R 10546571 intergenic not near genes chr2R 10546636 intergenic not near genes chr2R 10546701 intergenic not near genes chr2R_16_10545001 chr2R_10545001 RAL-405 839 chr2R 10595860 10595914 chr2R 10595974 10596018 30 107 7.0 8.5 7.8 3.4 158 chr2R 10595860 intron psq + chr2R 10595939 intron psq + chr2R 10596018 intron psq + chr2R_30_10595001 chr2R_10595001 RAL-405 840 chr2R 10644043 10644091 chr2R 10644141 10644187 17 97 3.5 0.5 2.0 5.7 144 chr2R 10644043 intron Git - chr2R 10644115 intron Git - chr2R 10644187 intron Git - chr2R_17_10640001 chr2R_10640001 RAL-405 841 chr2R 10757683 10757715 chr2R 10757783 10757822 10 105 2.0 1.0 1.5 4.0 139 chr2R 10757683 intron CG33144 - chr2R 10757752 intron CG33144 - chr2R 10757822 intron CG33144 - chr2R_10_10755001 chr2R_10755001 RAL-405 842 chr2R 10758803 10758823 chr2R 10758896 10758942 10 112 0.5 4.0 2.2 3.1 139 chr2R 10758803 intron CG33144 - chr2R 10758872 intron CG33144 - chr2R 10758942 intron CG33144 - chr2R_10_10755001 chr2R_10755001 RAL-405 843 chr2R 10761538 10761588 chr2R 10761712 10761757 11 171 2.5 4.0 3.2 2.6 219 chr2R 10761538 intron,5` UTR CG33144 -,CR43605 + chr2R 10761648 intron,5` UTR CG33144 -,CR43605 + chr2R 10761757 intron CG33144 - chr2R_11_10760001 chr2R_10760001 RAL-405 844 chr2R 10790122 10790177 chr2R 10790230 10790251 19 98 4.5 5.5 5.0 3.2 129 chr2R 10790122 intron CG33144 - chr2R 10790186 intron CG33144 - chr2R 10790251 intron CG33144 - chr2R_19_10790001 chr2R_10790001 RAL-405 845 chr2R 10795995 10796010 chr2R 10796097 10796112 4 102 9.0 3.0 6.0 0.6 117 chr2R 10795995 intron CG33144 - chr2R 10796054 intron CG33144 - chr2R 10796112 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-405 846 chr2R 10796014 10796038 chr2R 10796094 10796140 10 93 7.0 2.5 4.8 1.7 126 chr2R 10796014 intron CG33144 - chr2R 10796077 intron CG33144 - chr2R 10796140 intron CG33144 - chr2R_10_10795001 chr2R_10795001 RAL-405 847 chr2R 10809359 10809405 chr2R 10809541 10809587 13 176 7.0 5.0 6.0 1.9 228 chr2R 10809359 intergenic CG12935 +,wde - chr2R 10809473 5` UTR CG12935 + chr2R 10809587 5` UTR CG12935 + chr2R_13_10805001 chr2R_10805001 RAL-405 848 chr2R 10827338 10827357 chr2R 10827422 10827465 4 94 4.0 6.5 5.2 0.6 127 chr2R 10827338 exon CG12325 + chr2R 10827402 3` UTR CG12325 + chr2R 10827465 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_4_10825001 chr2R_10825001 RAL-405 849 chr2R 10948042 10948060 chr2R 10955588 10955618 17.6 4 7545 1.5 4.0 2.8 1.1 7576 chr2R 10948042 intergenic not near genes chr2R 10951830 intergenic not near genes chr2R 10955618 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-405 850 chr2R 10959070 10959107 chr2R 10959169 10959205 9 93 2.5 2.5 2.5 2.6 135 chr2R 10959070 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959205 intergenic not near genes chr2R_9_10955001 chr2R_10955001 RAL-405 851 chr2R 10985075 10985117 chr2R 10985179 10985192 10 97 8.0 8.0 8.0 1.1 117 chr2R 10985075 intron luna - chr2R 10985134 intron luna - chr2R 10985192 intron luna - chr2R_10_10985001 chr2R_10985001 RAL-405 852 chr2R 11009797 11009848 chr2R 11018991 11019014 roo 6 9182 4.5 1.5 3.0 1.5 9217 chr2R 11009797 intron luna - chr2R 11014406 intron luna - chr2R 11019014 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-405 853 chr2R 11019878 11019905 chr2R 11024946 11024976 jockey 6 5076 2.5 3.0 2.8 1.6 5098 chr2R 11019878 intron luna - chr2R 11022427 intron luna - chr2R 11024976 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-405 854 chr2R 11032634 11032663 chr2R 11032748 11032756 4 105 6.5 3.5 5.0 0.7 122 chr2R 11032634 intron luna - chr2R 11032695 intron luna - chr2R 11032756 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-405 855 chr2R 11064700 11064733 chr2R 11064793 11064817 15 99 6.0 9.0 7.5 1.8 117 chr2R 11064700 intron luna - chr2R 11064758 intron luna - chr2R 11064817 intron luna - chr2R_15_11060001 chr2R_11060001 RAL-405 856 chr2R 11110409 11110421 chr2R 11110505 11110517 4 95 0.0 7.0 3.5 0.9 108 chr2R 11110409 intron luna - chr2R 11110463 intron luna - chr2R 11110517 intron luna - chr2R_4_11110001 chr2R_11110001 RAL-405 857 chr2R 11154193 11154203 chr2R 11154322 11154343 4 134 4.5 5.5 5.0 0.7 150 chr2R 11154193 intron CG13229 - chr2R 11154268 intron CG13229 - chr2R 11154343 intron CG13229 - chr2R_4_11150001 chr2R_11150001 RAL-405 858 chr2R 11154205 11154234 chr2R 11154319 11154374 5 135 1.0 5.5 3.2 1.2 169 chr2R 11154205 intron CG13229 - chr2R 11154290 intron CG13229 - chr2R 11154374 intron CG13229 - chr2R_5_11150001 chr2R_11150001 RAL-405 859 chr2R 11179254 11179290 chr2R 11179360 11179367 14 97 10.0 3.5 6.8 1.8 113 chr2R 11179254 intron shn + chr2R 11179310 intron shn + chr2R 11179367 intron shn + chr2R_14_11175001 chr2R_11175001 RAL-405 860 chr2R 11297620 11297636 chr2R 11301964 11301980 flea 9 4342 4.5 0.0 2.2 2.8 4360 chr2R 11297620 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11301980 5` UTR CG7741 + chr2R_9_11295001 chr2R_11295001 RAL-405 861 chr2R 11415540 11415551 chr2R 11418674 11418713 opus 7 3146 3.5 3.0 3.2 1.7 3173 chr2R 11415540 intron Drip - chr2R 11417126 intron Drip - chr2R 11418713 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-405 862 chr2R 11472635 11472674 chr2R 11473845 11473880 pogo 10 1213 3.0 6.0 4.5 1.8 1245 chr2R 11472635 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473880 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-405 863 chr2R 11494591 11494634 chr2R 11494685 11494742 7 93 1.5 1.5 1.5 2.8 151 chr2R 11494591 intron inv + chr2R 11494666 intron inv + chr2R 11494742 intron inv + chr2R_7_11490001 chr2R_11490001 RAL-405 864 chr2R 11540477 11540501 chr2R 11540590 11540598 6 114 4.5 4.0 4.2 1.2 121 chr2R 11540477 intergenic not near genes chr2R 11540538 intergenic not near genes chr2R 11540598 intergenic not near genes chr2R_6_11540001 chr2R_11540001 RAL-405 865 chr2R 11660353 11660399 chr2R 11660489 11660535 7 134 1.0 2.0 1.5 2.8 182 chr2R 11660353 intron Roc2 - chr2R 11660444 intron Roc2 - chr2R 11660535 intron Roc2 - chr2R_7_11660001 chr2R_11660001 RAL-405 866 chr2R 11662827 11662842 chr2R 11663234 11663258 5 411 0.5 3.5 2.0 1.7 431 chr2R 11662827 intron Roc2 - chr2R 11663042 intron Roc2 - chr2R 11663258 intron Roc2 - chr2R_5_11660001 chr2R_11660001 RAL-405 867 chr2R 11662843 11662859 chr2R 11663233 11663275 9 408 0.5 3.5 2.0 3.0 432 chr2R 11662843 intron Roc2 - chr2R 11663059 intron Roc2 - chr2R 11663275 intron Roc2 - chr2R_9_11660001 chr2R_11660001 RAL-405 868 chr2R 11667377 11667401 chr2R 11667491 11667515 7 113 4.5 1.5 3.0 1.8 138 chr2R 11667377 intron,intron Roc2 -,Tret1-1 + chr2R 11667446 intron,intron Roc2 -,Tret1-1 + chr2R 11667515 intron,intron Roc2 -,Tret1-1 + chr2R_7_11665001 chr2R_11665001 RAL-405 869 chr2R 11672834 11672847 chr2R 11672941 11672954 8 103 4.0 7.0 5.5 1.2 120 chr2R 11672834 intron,exon Roc2 -,Tret1-1 + chr2R 11672894 intron,intron Roc2 -,Tret1-1 + chr2R 11672954 intron,intron Roc2 -,Tret1-1 + chr2R_8_11670001 chr2R_11670001 RAL-405 870 chr2R 11673824 11673843 chr2R 11677375 11677394 4 3547 4.5 14.5 9.5 0.4 3570 chr2R 11673824 intron,exon Roc2 -,Tret1-1 + chr2R 11675609 intron Roc2 - chr2R 11677394 intron,exon Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-405 871 chr2R 11724137 11724181 chr2R 11724242 11724289 12 105 6.0 4.0 5.0 2.0 152 chr2R 11724137 intron pyr + chr2R 11724213 intron pyr + chr2R 11724289 intron pyr + chr2R_12_11720001 chr2R_11720001 RAL-405 872 chr2R 11863868 11863883 chr2R 11863975 11863990 7 107 3.5 7.0 5.2 1.1 122 chr2R 11863868 intergenic CG42531 + chr2R 11863929 intergenic CG42531 + chr2R 11863990 intergenic CG42531 + chr2R_7_11860001 chr2R_11860001 RAL-405 873 chr2R 11955366 11955376 chr2R 11955460 11955475 5 98 7.0 2.5 4.8 0.9 109 chr2R 11955366 intron CG13188 + chr2R 11955420 intron CG13188 + chr2R 11955475 intron CG13188 + chr2R_5_11955001 chr2R_11955001 RAL-405 874 chr2R 12061099 12061149 chr2R 12061205 12061255 12 104 2.5 5.0 3.8 2.5 156 chr2R 12061099 intron Drep-3 + chr2R 12061177 intron Drep-3 + chr2R 12061255 intron Drep-3 + chr2R_12_12060001 chr2R_12060001 RAL-405 875 chr2R 8518778 8518782 chr2R 12066177 12066193 4 3547402 27.0 8.0 17.5 0.2 3547415 chr2R 8518778 intron mtt - chr2R 10292486 intron CAP + chr2R 12066193 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-405 876 chr2R 12145921 12145944 chr2R 12148614 12148634 4 2686 34.5 17.5 26.0 0.1 2713 chr2R 12145921 exon Hen1 + chr2R 12147278 intron,intron Hen1 +,CG8878 - chr2R 12148634 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-405 877 chr2R 12185980 12186036 chr2R 12186095 12186138 40 108 8.5 10.5 9.5 3.8 158 chr2R 12185980 intron Cyp6g1 + chr2R 12186059 intron Cyp6g1 + chr2R 12186138 intron Cyp6g1 + chr2R_40_12185001 chr2R_12185001 RAL-405 878 chr2R 12185222 12185236 chr2R 12188127 12188141 6 2906 26.0 71.5 48.8 0.1 2919 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186682 exon Cyp6g1 + chr2R 12188141 3` UTR Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-405 879 chr2R 12187476 12187496 chr2R 12190079 12190122 8 2616 19.5 21.5 20.5 0.4 2646 chr2R 12187476 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190122 exon Cyp6g2 - chr2R_8_12185001 chr2R_12185001 RAL-405 880 chr2R 12210118 12210164 chr2R 12210219 12210251 6 98 3.5 3.0 3.2 1.4 133 chr2R 12210118 exon Sr-CII - chr2R 12210184 intron Sr-CII - chr2R 12210251 intron Sr-CII - chr2R_6_12210001 chr2R_12210001 RAL-405 881 chr2R 12284293 12284305 chr2R 12284397 12284408 6 103 2.5 6.5 4.5 1.1 115 chr2R 12284293 intron CG42700 + chr2R 12284350 intron CG42700 + chr2R 12284408 intron CG42700 + chr2R_6_12280001 chr2R_12280001 RAL-405 882 chr2R 12285364 12285410 chr2R 12285481 12285527 14 112 3.5 1.0 2.2 4.4 163 chr2R 12285364 intron CG42700 + chr2R 12285446 intron CG42700 + chr2R 12285527 intron CG42700 + chr2R_14_12285001 chr2R_12285001 RAL-405 883 chr2R 12301941 12301989 chr2R 12302041 12302089 17 94 5.5 6.5 6.0 2.4 148 chr2R 12301941 intron CG8850 - chr2R 12302015 intron CG8850 - chr2R 12302089 intron CG8850 - chr2R_17_12300001 chr2R_12300001 RAL-405 884 chr2R 12363362 12363415 chr2R 12363814 12363842 12 448 7.5 7.0 7.2 1.5 480 chr2R 12363362 intergenic CG30043 + chr2R 12363602 intergenic CG30043 + chr2R 12363842 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-405 885 chr2R 12565562 12565596 chr2R 12565965 12565999 11 402 1.0 9.0 5.0 1.8 437 chr2R 12565562 intergenic not near genes chr2R 12565780 intergenic Cyp301a1 + chr2R 12565999 intergenic Cyp301a1 + chr2R_11_12565001 chr2R_12565001 RAL-405 886 chr2R 12643781 12643816 chr2R 12643863 12643873 6 85 4.0 1.0 2.5 1.7 92 chr2R 12643781 intron CG8785 - chr2R 12643827 intron CG8785 - chr2R 12643873 intron CG8785 - chr2R_6_12640001 chr2R_12640001 RAL-405 887 chr2R 12676804 12676835 chr2R 12677306 12677342 6 502 3.5 9.5 6.5 0.8 538 chr2R 12676804 intron CG42708 - chr2R 12677073 intron CG42708 - chr2R 12677342 intron CG42708 - chr2R_6_12675001 chr2R_12675001 RAL-405 888 chr2R 12707498 12707546 chr2R 12715884 12715927 roo 20 8382 5.5 3.5 4.5 3.6 8429 chr2R 12707498 intron CG42663 + chr2R 12711712 intron CG42663 + chr2R 12715927 intron CG42663 + chr2R_20_12710001 chr2R_12710001 RAL-405 889 chr2R 12728855 12728903 chr2R 12728978 12729011 11 115 0.0 6.5 3.2 2.6 156 chr2R 12728855 intron CG42663 + chr2R 12728933 intron CG42663 + chr2R 12729011 intron CG42663 + chr2R_11_12725001 chr2R_12725001 RAL-405 890 chr2R 12733017 12733050 chr2R 12733115 12733148 15 96 4.5 5.5 5.0 2.5 131 chr2R 12733017 intron CG42663 + chr2R 12733082 intron CG42663 + chr2R 12733148 intron CG42663 + chr2R_15_12730001 chr2R_12730001 RAL-405 891 chr2R 12763840 12763879 chr2R 12764069 12764094 7 225 0.0 8.0 4.0 1.4 254 chr2R 12763840 intergenic CG12374 + chr2R 12763967 intergenic CG12374 + chr2R 12764094 intergenic CG12374 + chr2R_7_12760001 chr2R_12760001 RAL-405 892 chr2R 12771308 12771357 chr2R 12771437 12771486 13 125 3.5 3.0 3.2 3.1 178 chr2R 12771308 intergenic not near genes chr2R 12771397 intergenic not near genes chr2R 12771486 intergenic not near genes chr2R_13_12770001 chr2R_12770001 RAL-405 893 chr2R 12808299 12808346 chr2R 12808414 12808451 8 111 2.0 2.5 2.2 2.5 152 chr2R 12808299 intergenic CG17580 + chr2R 12808375 intergenic not near genes chr2R 12808451 intergenic not near genes chr2R_8_12805001 chr2R_12805001 RAL-405 894 chr2R 12819438 12819462 chr2R 12824531 12824554 jockey 4 5090 6.0 2.0 4.0 0.8 5116 chr2R 12819438 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824554 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-405 895 chr2R 12834140 12834189 chr2R 12834243 12834267 24 98 7.5 6.5 7.0 3.0 127 chr2R 12834140 intergenic not near genes chr2R 12834204 intergenic not near genes chr2R 12834267 intergenic not near genes chr2R_24_12830001 chr2R_12830001 RAL-405 896 chr2R 12844703 12844726 chr2R 12844799 12844831 4 101 5.0 2.5 3.8 0.8 128 chr2R 12844703 3` UTR Or49b + chr2R 12844767 intergenic Or49b + chr2R 12844831 intergenic Or49b + chr2R_4_12840001 chr2R_12840001 RAL-405 897 chr2R 12897461 12897472 chr2R 12897567 12897583 8 109 6.5 7.5 7.0 1.0 122 chr2R 12897461 intron vg + chr2R 12897522 intron vg + chr2R 12897583 intron vg + chr2R_8_12895001 chr2R_12895001 RAL-405 898 chr2R 12897473 12897485 chr2R 12897558 12897596 6 106 5.0 7.0 6.0 0.9 123 chr2R 12897473 intron vg + chr2R 12897534 intron vg + chr2R 12897596 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-405 899 chr2R 13012366 13012417 chr2R 13012489 13012530 27 118 9.5 6.0 7.8 3.1 164 chr2R 13012366 intergenic not near genes chr2R 13012448 intergenic not near genes chr2R 13012530 intergenic not near genes chr2R_27_13010001 chr2R_13010001 RAL-405 900 chr2R 13034675 13034683 chr2R 13034775 13034783 4 100 0.0 0.0 0.0 4.0 108 chr2R 13034675 intergenic not near genes chr2R 13034729 intergenic not near genes chr2R 13034783 intergenic not near genes chr2R_4_13030001 chr2R_13030001 RAL-405 901 chr2R 13048068 13048110 chr2R 13048160 13048174 8 84 3.5 5.0 4.2 1.5 106 chr2R 13048068 intergenic not near genes chr2R 13048121 intergenic not near genes chr2R 13048174 intergenic not near genes chr2R_8_13045001 chr2R_13045001 RAL-405 902 chr2R 13078758 13078778 chr2R 13078858 13078890 5 106 9.0 3.0 6.0 0.7 132 chr2R 13078758 intron Drl-2 - chr2R 13078824 intron Drl-2 - chr2R 13078890 intron Drl-2 - chr2R_5_13075001 chr2R_13075001 RAL-405 903 chr2R 13136822 13136834 chr2R 13141640 13141652 Doc 5 4818 4.5 0.5 2.5 1.4 4830 chr2R 13136822 exon Cap-G + chr2R 13139237 intron Cap-G + chr2R 13141652 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-405 904 chr2R 13136839 13136847 chr2R 13141637 13141640 Doc 4 4800 4.0 0.5 2.2 1.2 4801 chr2R 13136839 exon Cap-G + chr2R 13139240 intron Cap-G + chr2R 13141640 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-405 905 chr2R 13167414 13167458 chr2R 13167528 13167541 13 111 8.0 0.0 4.0 2.6 127 chr2R 13167414 intron GLaz - chr2R 13167478 intron GLaz - chr2R 13167541 intron GLaz - chr2R_13_13165001 chr2R_13165001 RAL-405 906 chr2R 13305494 13305511 chr2R 13305596 13305603 4 97 6.0 6.5 6.2 0.6 109 chr2R 13305494 intergenic not near genes chr2R 13305548 intergenic not near genes chr2R 13305603 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-405 907 chr2R 13372193 13372212 chr2R 13372269 13372311 5 89 0.5 4.0 2.2 1.6 118 chr2R 13372193 intergenic not near genes chr2R 13372252 intergenic not near genes chr2R 13372311 intergenic not near genes chr2R_5_13370001 chr2R_13370001 RAL-405 908 chr2R 13403902 13403936 chr2R 13404006 13404031 17 102 6.5 7.0 6.8 2.2 129 chr2R 13403902 intergenic not near genes chr2R 13403966 intergenic not near genes chr2R 13404031 intergenic not near genes chr2R_17_13400001 chr2R_13400001 RAL-405 909 chr2R 13431469 13431509 chr2R 13431567 13431608 14 98 8.0 0.0 4.0 2.8 139 chr2R 13431469 intron CG42321 - chr2R 13431538 intron CG42321 - chr2R 13431608 intron CG42321 - chr2R_14_13430001 chr2R_13430001 RAL-405 910 chr2R 13478983 13479027 chr2R 13479087 13479120 12 100 4.0 8.5 6.2 1.7 137 chr2R 13478983 intron arr - chr2R 13479052 intron arr - chr2R 13479120 intron arr - chr2R_12_13475001 chr2R_13475001 RAL-405 911 chr2R 13547079 13547109 chr2R 13547294 13547324 8 213 2.0 10.0 6.0 1.1 245 chr2R 13547079 intron CG6145 - chr2R 13547202 intron CG6145 - chr2R 13547324 intron CG6145 - chr2R_8_13545001 chr2R_13545001 RAL-405 912 chr2R 13554738 13554774 chr2R 13554837 13554859 11 97 0.0 7.5 3.8 2.3 121 chr2R 13554738 intron Roe1 + chr2R 13554798 intron Roe1 + chr2R 13554859 intron Roe1 + chr2R_11_13550001 chr2R_13550001 RAL-405 913 chr2R 13566238 13566280 chr2R 13566338 13566352 9 96 3.0 1.0 2.0 3.0 114 chr2R 13566238 intergenic not near genes chr2R 13566295 intergenic not near genes chr2R 13566352 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-405 914 chr2R 13571507 13571556 chr2R 13571628 13571666 8 120 2.0 0.5 1.2 3.6 159 chr2R 13571507 3` UTR CG42807 - chr2R 13571586 3` UTR CG42807 - chr2R 13571666 exon CG42807 - chr2R_8_13570001 chr2R_13570001 RAL-405 915 chr2R 13728116 13728145 chr2R 13735792 13735816 opus 13 7678 8.0 7.0 7.5 1.5 7700 chr2R 13728116 intron fas + chr2R 13731966 intron fas + chr2R 13735816 intron fas + chr2R_13_13730001 chr2R_13730001 RAL-405 916 chr2R 13738921 13738938 chr2R 13739044 13739061 10 121 4.5 7.5 6.0 1.4 140 chr2R 13738921 intron fas + chr2R 13738991 intron fas + chr2R 13739061 intron fas + chr2R_10_13735001 chr2R_13735001 RAL-405 917 chr2R 13748019 13748046 chr2R 13748113 13748140 9 97 8.0 6.5 7.2 1.1 121 chr2R 13748019 3` UTR fas + chr2R 13748080 3` UTR fas + chr2R 13748140 3` UTR fas + chr2R_9_13745001 chr2R_13745001 RAL-405 918 chr2R 13768960 13768998 chr2R 13769079 13769113 6 113 3.0 3.5 3.2 1.4 153 chr2R 13768960 intergenic not near genes chr2R 13769036 intergenic not near genes chr2R 13769113 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-405 919 chr2R 13817641 13817692 chr2R 13817739 13817794 6 99 0.0 0.0 0.0 6.0 153 chr2R 13817641 intron stj + chr2R 13817718 intron stj + chr2R 13817794 intron stj + chr2R_6_13815001 chr2R_13815001 RAL-405 920 chr2R 13894597 13894640 chr2R 13894781 13894826 15 184 2.5 2.5 2.5 4.3 229 chr2R 13894597 intron shot - chr2R 13894712 intron shot - chr2R 13894826 intron shot - chr2R_15_13890001 chr2R_13890001 RAL-405 921 chr2R 13925855 13925863 chr2R 13926029 13926037 5 174 12.0 7.0 9.5 0.5 182 chr2R 13925855 intron shot - chr2R 13925946 intron shot - chr2R 13926037 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-405 922 chr2R 13958281 13958293 chr2R 13958374 13958421 8 125 4.0 3.5 3.8 1.7 140 chr2R 13958281 intergenic AGO1 -,Rpn13 - chr2R 13958351 intergenic Rpn13 -,AGO1 - chr2R 13958421 intergenic Rpn13 -,AGO1 - chr2R_8_13955001 chr2R_13955001 RAL-405 923 chr2R 14018144 14018180 chr2R 14018248 14018284 13 99 8.5 10.0 9.2 1.3 140 chr2R 14018144 intron mam + chr2R 14018214 intron mam + chr2R 14018284 intron mam + chr2R_13_14015001 chr2R_14015001 RAL-405 924 chr2R 14037242 14037298 chr2R 14037345 14037401 10 95 0.0 3.5 1.8 3.6 159 chr2R 14037242 intron mam + chr2R 14037322 intron mam + chr2R 14037401 intron mam + chr2R_10_14035001 chr2R_14035001 RAL-405 925 chr2R 14093416 14093454 chr2R 14109587 14109595 5 16164 2.5 0.5 1.5 2.0 16179 chr2R 14093416 intron Prosap - chr2R 14101506 intron Prosap - chr2R 14109595 intron Prosap - chr2R_5_14100001 chr2R_14100001 RAL-405 926 chr2R 14141930 14142058 chr2R 14142057 14142250 8 234 0.0 0.0 0.0 8.0 320 chr2R 14141930 intergenic not near genes chr2R 14142090 intergenic not near genes chr2R 14142250 intergenic not near genes chr2R_8_14140001 chr2R_14140001 RAL-405 927 chr2R 14168352 14168373 chr2R 14168461 14168482 11 107 8.5 6.5 7.5 1.3 130 chr2R 14168352 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168417 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168482 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_11_14165001 chr2R_14165001 RAL-405 928 chr2R 14168374 14168395 chr2R 14168456 14168504 5 99 4.0 6.0 5.0 0.8 130 chr2R 14168374 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168439 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168504 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_5_14165001 chr2R_14165001 RAL-405 929 chr2R 14357539 14357563 chr2R 14357649 14357673 12 109 6.5 7.5 7.0 1.5 134 chr2R 14357539 intergenic CG8617 -,Arc1 - chr2R 14357606 intergenic Arc1 -,CG8617 - chr2R 14357673 intergenic Arc1 -,CG8617 - chr2R_12_14355001 chr2R_14355001 RAL-405 930 chr2R 14393855 14393877 chr2R 14393950 14393970 4 95 8.5 3.5 6.0 0.6 115 chr2R 14393855 intergenic not near genes chr2R 14393912 intergenic not near genes chr2R 14393970 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-405 931 chr2R 14393879 14393895 chr2R 14393949 14393980 6 90 7.0 3.5 5.2 1.0 101 chr2R 14393879 intergenic not near genes chr2R 14393930 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-405 932 chr2R 14394211 14394244 chr2R 14399020 14399025 Doc 7 4800 6.5 10.0 8.2 0.8 4814 chr2R 14394211 intergenic not near genes chr2R 14396618 intergenic not near genes chr2R 14399025 intergenic not near genes chr2R_7_14395001 chr2R_14395001 RAL-405 933 chr2R 14492546 14492573 chr2R 14492656 14492685 6 122 1.5 1.0 1.2 2.7 139 chr2R 14492546 intron L + chr2R 14492616 intron L + chr2R 14492685 intron L + chr2R_6_14490001 chr2R_14490001 RAL-405 934 chr2R 14497369 14497419 chr2R 14498553 14498574 1360 17 1179 7.0 5.0 6.0 2.4 1205 chr2R 14497369 3` UTR Cpsf160 - chr2R 14497972 intron Cpsf160 - chr2R 14498574 3` UTR Cpsf160 - chr2R_17_14495001 chr2R_14495001 RAL-405 935 chr2R 14514465 14514496 chr2R 14514578 14514604 20 112 7.0 7.5 7.2 2.4 139 chr2R 14514465 intron,intron Cpr51A -,CG30197 + chr2R 14514534 intron,intron Cpr51A -,CG30197 + chr2R 14514604 intron,intron Cpr51A -,CG30197 + chr2R_20_14510001 chr2R_14510001 RAL-405 936 chr2R 14536217 14536251 chr2R 14536367 14536401 6 150 5.5 6.5 6.0 0.9 184 chr2R 14536217 intron ttv + chr2R 14536309 intron ttv + chr2R 14536401 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-405 937 chr2R 14538939 14538991 chr2R 14539035 14539046 4 76 5.0 6.0 5.5 0.6 107 chr2R 14538939 intron ttv + chr2R 14538992 intron ttv + chr2R 14539046 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-405 938 chr2R 14556145 14556193 chr2R 14556244 14556282 13 92 4.0 7.5 5.8 1.9 137 chr2R 14556145 intron ttv + chr2R 14556214 intron ttv + chr2R 14556282 intron ttv + chr2R_13_14555001 chr2R_14555001 RAL-405 939 chr2R 14565545 14565584 chr2R 14565642 14565656 9 91 7.0 4.5 5.8 1.3 111 chr2R 14565545 intron ttv + chr2R 14565600 intron ttv + chr2R 14565656 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-405 940 chr2R 14565587 14565591 chr2R 14565638 14565687 4 84 5.0 3.5 4.2 0.8 100 chr2R 14565587 intron ttv + chr2R 14565637 intron ttv + chr2R 14565687 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-405 941 chr2R 14623877 14623890 chr2R 14623993 14624005 5 116 0.0 6.5 3.2 1.2 128 chr2R 14623877 intron Uhg5 + chr2R 14623941 5` UTR Uhg5 + chr2R 14624005 intron Uhg5 + chr2R_5_14620001 chr2R_14620001 RAL-405 942 chr2R 14642051 14642076 chr2R 14642139 14642184 6 101 7.5 2.0 4.8 1.0 133 chr2R 14642051 intergenic not near genes chr2R 14642118 intergenic not near genes chr2R 14642184 intergenic not near genes chr2R_6_14640001 chr2R_14640001 RAL-405 943 chr2R 14653885 14653897 chr2R 14654005 14654017 5 119 11.0 6.0 8.5 0.5 132 chr2R 14653885 intergenic not near genes chr2R 14653951 intergenic not near genes chr2R 14654017 intergenic not near genes chr2R_5_14650001 chr2R_14650001 RAL-405 944 chr2R 14653900 14653923 chr2R 14654002 14654043 12 115 5.5 5.0 5.2 1.9 143 chr2R 14653900 intergenic not near genes chr2R 14653972 intergenic not near genes chr2R 14654043 intergenic not near genes chr2R_12_14650001 chr2R_14650001 RAL-405 945 chr2R 14707055 14707098 chr2R 14707155 14707197 18 94 1.5 5.5 3.5 4.0 142 chr2R 14707055 intron mspo - chr2R 14707126 intron mspo - chr2R 14707197 intron mspo - chr2R_18_14705001 chr2R_14705001 RAL-405 946 chr2R 14746489 14746538 chr2R 14746628 14746652 10 133 3.0 4.5 3.8 2.1 163 chr2R 14746489 3` UTR Dro + chr2R 14746570 3` UTR Dro + chr2R 14746652 3` UTR Dro + chr2R_10_14745001 chr2R_14745001 RAL-405 947 chr2R 14778981 14779016 chr2R 14779125 14779169 8 149 3.5 2.0 2.8 2.1 188 chr2R 14778981 intron kn - chr2R 14779075 intron kn - chr2R 14779169 intron kn - chr2R_8_14775001 chr2R_14775001 RAL-405 948 chr2R 14796328 14796360 chr2R 14796445 14796477 12 117 6.0 11.0 8.5 1.3 149 chr2R 14796328 intron kn - chr2R 14796402 intron kn - chr2R 14796477 intron kn - chr2R_12_14795001 chr2R_14795001 RAL-405 949 chr2R 14803467 14803497 chr2R 14803567 14803596 10 99 7.5 6.5 7.0 1.2 129 chr2R 14803467 intron kn - chr2R 14803532 intron kn - chr2R 14803596 intron kn - chr2R_10_14800001 chr2R_14800001 RAL-405 950 chr2R 14817665 14817707 chr2R 14817771 14817814 9 106 5.5 4.5 5.0 1.5 149 chr2R 14817665 intergenic CG10202 - chr2R 14817740 intergenic CG10202 - chr2R 14817814 intergenic CG10202 - chr2R_9_14815001 chr2R_14815001 RAL-405 951 chr2R 14889194 14889238 chr2R 14897816 14897840 Max-element 13 8620 6.5 0.0 3.2 3.1 8646 chr2R 14889194 intergenic Cyp6a8 - chr2R 14893517 intergenic not near genes chr2R 14897840 intergenic not near genes chr2R_13_14890001 chr2R_14890001 RAL-405 952 chr2R 14911685 14911728 chr2R 14911823 14911871 18 139 4.5 5.0 4.8 3.1 186 chr2R 14911685 intron CG10249 - chr2R 14911778 intron CG10249 - chr2R 14911871 intron CG10249 - chr2R_18_14910001 chr2R_14910001 RAL-405 953 chr2R 14916536 14916552 chr2R 14916635 14916652 4 100 8.0 5.5 6.8 0.5 116 chr2R 14916536 intron CG10249 - chr2R 14916594 intron CG10249 - chr2R 14916652 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-405 954 chr2R 14922124 14922167 chr2R 14922220 14922242 8 91 7.0 0.0 3.5 1.8 118 chr2R 14922124 intron CG10249 - chr2R 14922183 intron CG10249 - chr2R 14922242 intron CG10249 - chr2R_8_14920001 chr2R_14920001 RAL-405 955 chr2R 14925042 14925081 chr2R 14925214 14925258 15 172 4.0 5.5 4.8 2.6 216 chr2R 14925042 intron CG10249 - chr2R 14925150 intron CG10249 - chr2R 14925258 intron CG10249 - chr2R_15_14925001 chr2R_14925001 RAL-405 956 chr2R 14947348 14947397 chr2R 14947525 14947552 15 173 6.5 2.5 4.5 2.7 204 chr2R 14947348 intron aPKC - chr2R 14947450 intron aPKC - chr2R 14947552 intron aPKC - chr2R_15_14945001 chr2R_14945001 RAL-405 957 chr2R 14968051 14968065 chr2R 14968145 14968164 6 97 7.0 3.5 5.2 1.0 113 chr2R 14968051 intron ckn + chr2R 14968108 intron ckn + chr2R 14968164 intron ckn + chr2R_6_14965001 chr2R_14965001 RAL-405 958 chr2R 14968066 14968087 chr2R 14968141 14968186 7 95 6.0 3.5 4.8 1.2 120 chr2R 14968066 intron ckn + chr2R 14968126 intron ckn + chr2R 14968186 intron ckn + chr2R_7_14965001 chr2R_14965001 RAL-405 959 chr2R 15004711 15004748 chr2R 15005060 15005097 jockey 7 348 4.5 8.0 6.2 1.0 386 chr2R 15004711 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005097 intergenic not near genes chr2R_7_15000001 chr2R_15000001 RAL-405 960 chr2R 15015442 15015485 chr2R 15022881 15022929 mdg1 19 7437 3.0 1.5 2.2 5.9 7487 chr2R 15015442 intron hbs + chr2R 15019186 intron hbs + chr2R 15022929 intron hbs + chr2R_19_15015001 chr2R_15015001 RAL-405 961 chr2R 15054765 15054769 chr2R 15054817 15054846 4 67 4.0 2.0 3.0 1.0 81 chr2R 15054765 intergenic not near genes chr2R 15054806 intergenic not near genes chr2R 15054846 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-405 962 chr2R 15084966 15085005 chr2R 15092030 15092069 297 22 7064 4.5 4.0 4.2 4.2 7103 chr2R 15084966 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092069 5` UTR CR44457 + chr2R_22_15085001 chr2R_15085001 RAL-405 963 chr2R 15101021 15101044 chr2R 15101106 15101141 5 95 1.5 3.0 2.2 1.6 120 chr2R 15101021 intergenic not near genes chr2R 15101081 intergenic not near genes chr2R 15101141 intergenic not near genes chr2R_5_15100001 chr2R_15100001 RAL-405 964 chr2R 15103904 15103948 chr2R 15104020 15104038 9 113 2.5 5.0 3.8 1.9 134 chr2R 15103904 intergenic not near genes chr2R 15103971 intergenic not near genes chr2R 15104038 intergenic not near genes chr2R_9_15100001 chr2R_15100001 RAL-405 965 chr2R 15119298 15119350 chr2R 15127799 15127821 Tirant 12 8492 2.0 3.0 2.5 3.4 8523 chr2R 15119298 intron chn + chr2R 15123560 intron chn + chr2R 15127821 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-405 966 chr2R 15137950 15137997 chr2R 15138050 15138099 12 94 5.0 0.0 2.5 3.4 149 chr2R 15137950 intron chn + chr2R 15138024 intron chn + chr2R 15138099 intron chn + chr2R_12_15135001 chr2R_15135001 RAL-405 967 chr2R 15204141 15204183 chr2R 15204294 15204336 17 150 7.5 4.5 6.0 2.4 195 chr2R 15204141 3` UTR CG11807 + chr2R 15204238 3` UTR CG11807 + chr2R 15204336 3` UTR CG11807 + chr2R_17_15200001 chr2R_15200001 RAL-405 968 chr2R 15235068 15235081 chr2R 15235216 15235229 6 148 2.0 2.0 2.0 2.0 161 chr2R 15235068 intron Fs - chr2R 15235148 intron Fs - chr2R 15235229 intron Fs - chr2R_6_15235001 chr2R_15235001 RAL-405 969 chr2R 15235085 15235092 chr2R 15235213 15235230 4 137 0.5 2.0 1.2 1.8 145 chr2R 15235085 intron Fs - chr2R 15235158 intron Fs - chr2R 15235230 intron Fs - chr2R_4_15235001 chr2R_15235001 RAL-405 970 chr2R 15252108 15252152 chr2R 15252195 15252207 16 84 0.0 1.5 0.8 8.9 99 chr2R 15252108 intron scb + chr2R 15252158 intron scb + chr2R 15252207 intron scb + chr2R_16_15250001 chr2R_15250001 RAL-405 971 chr2R 15333908 15333954 chr2R 15334091 15334134 12 174 0.5 0.5 0.5 8.0 226 chr2R 15333908 exon Hr51 + chr2R 15334021 intron Hr51 + chr2R 15334134 intron Hr51 + chr2R_12_15330001 chr2R_15330001 RAL-405 972 chr2R 15404972 15405016 chr2R 15405069 15405092 10 87 2.0 1.5 1.8 3.6 120 chr2R 15404972 intron,5` UTR CG43729 +,CR45020 + chr2R 15405032 intron,5` UTR CG43729 +,CR45020 + chr2R 15405092 intron,5` UTR CG43729 +,CR45020 + chr2R_10_15405001 chr2R_15405001 RAL-405 973 chr2R 15472030 15472059 chr2R 15472114 15472163 6 92 0.0 5.0 2.5 1.7 133 chr2R 15472030 intergenic CG8180 -,CG43729 + chr2R 15472096 intergenic CG8180 -,CG43729 + chr2R 15472163 intergenic CG8180 -,CG43729 + chr2R_6_15470001 chr2R_15470001 RAL-405 974 chr2R 15516532 15516580 chr2R 15516642 15516680 9 108 2.0 7.0 4.5 1.6 148 chr2R 15516532 3` UTR Khc-73 - chr2R 15516606 3` UTR Khc-73 - chr2R 15516680 3` UTR Khc-73 - chr2R_9_15515001 chr2R_15515001 RAL-405 975 chr2R 15656011 15656068 chr2R 15656122 15656179 7 107 0.5 2.0 1.2 3.2 168 chr2R 15656011 intron CG42524 + chr2R 15656095 intron CG42524 + chr2R 15656179 intron CG42524 + chr2R_7_15655001 chr2R_15655001 RAL-405 976 chr2R 15720747 15720796 chr2R 15720863 15720912 6 116 1.5 3.0 2.2 1.9 165 chr2R 15720747 intergenic not near genes chr2R 15720830 intergenic not near genes chr2R 15720912 intergenic not near genes chr2R_6_15720001 chr2R_15720001 RAL-405 977 chr2R 15848318 15848346 chr2R 15848415 15848443 8 97 2.0 0.0 1.0 4.0 125 chr2R 15848318 intron tun + chr2R 15848380 intron tun + chr2R 15848443 intron tun + chr2R_8_15845001 chr2R_15845001 RAL-405 978 chr2R 16203450 16203487 chr2R 16203611 16203628 10 153 4.5 9.0 6.8 1.3 178 chr2R 16203450 3` UTR mrj - chr2R 16203539 3` UTR mrj - chr2R 16203628 3` UTR mrj - chr2R_10_16200001 chr2R_16200001 RAL-405 979 chr2R 16203489 16203502 chr2R 16203610 16203638 10 143 2.5 9.0 5.8 1.5 149 chr2R 16203489 3` UTR mrj - chr2R 16203564 3` UTR mrj - chr2R 16203638 3` UTR mrj - chr2R_10_16200001 chr2R_16200001 RAL-405 980 chr2R 16460742 16460758 chr2R 16460844 16460845 4 98 7.5 4.5 6.0 0.6 103 chr2R 16460742 intergenic not near genes chr2R 16460794 intergenic not near genes chr2R 16460845 intergenic not near genes chr2R_4_16460001 chr2R_16460001 RAL-405 981 chr2R 16489269 16489300 chr2R 16489352 16489398 8 95 2.5 2.5 2.5 2.3 129 chr2R 16489269 intergenic CG33459 + chr2R 16489334 intergenic CG33459 + chr2R 16489398 intergenic CG33459 + chr2R_8_16485001 chr2R_16485001 RAL-405 982 chr2R 16518040 16518066 chr2R 16518125 16518127 6 84 8.5 3.0 5.8 0.9 87 chr2R 16518040 intron Sema-2a + chr2R 16518084 intron Sema-2a + chr2R 16518127 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-405 983 chr2R 16530474 16530507 chr2R 16530667 16530693 7 190 8.0 0.5 4.2 1.3 219 chr2R 16530474 exon Sema-2a + chr2R 16530584 intron Sema-2a + chr2R 16530693 intron Sema-2a + chr2R_7_16530001 chr2R_16530001 RAL-405 984 chr2R 16538071 16538090 chr2R 16538185 16538199 8 113 2.5 6.5 4.5 1.5 128 chr2R 16538071 intergenic not near genes chr2R 16538135 intergenic not near genes chr2R 16538199 intergenic not near genes chr2R_8_16535001 chr2R_16535001 RAL-405 985 chr2R 16539634 16539669 chr2R 16544863 16544898 copia 14 5228 5.5 10.5 8.0 1.6 5264 chr2R 16539634 intergenic not near genes chr2R 16542266 intergenic not near genes chr2R 16544898 intergenic not near genes chr2R_14_16540001 chr2R_16540001 RAL-405 986 chr2R 16571860 16571875 chr2R 16571975 16571985 5 113 8.5 8.0 8.2 0.5 125 chr2R 16571860 intergenic CG4927 + chr2R 16571922 intergenic CG4927 + chr2R 16571985 intergenic CG4927 + chr2R_5_16570001 chr2R_16570001 RAL-405 987 chr2R 16571878 16571906 chr2R 16571968 16572021 17 107 4.0 7.5 5.8 2.5 143 chr2R 16571878 intergenic CG4927 + chr2R 16571950 intergenic CG4927 + chr2R 16572021 intergenic CG4927 + chr2R_17_16570001 chr2R_16570001 RAL-405 988 chr2R 16586877 16586907 chr2R 16586961 16587000 9 89 2.0 6.0 4.0 1.8 123 chr2R 16586877 intergenic RpLP2 +,CG8311 - chr2R 16586938 intergenic CG8311 -,RpLP2 + chr2R 16587000 intergenic CG8311 -,RpLP2 + chr2R_9_16585001 chr2R_16585001 RAL-405 989 chr2R 16618518 16618543 chr2R 16618622 16618647 15 101 8.5 7.5 8.0 1.7 129 chr2R 16618518 intron CG5065 + chr2R 16618582 intron CG5065 + chr2R 16618647 intron CG5065 + chr2R_15_16615001 chr2R_16615001 RAL-405 990 chr2R 16618546 16618572 chr2R 16618620 16618629 11 90 2.0 6.5 4.2 2.1 83 chr2R 16618546 intron CG5065 + chr2R 16618588 intron CG5065 + chr2R 16618629 intron CG5065 + chr2R_11_16615001 chr2R_16615001 RAL-405 991 chr2R 16713053 16713063 chr2R 16713157 16713167 4 104 0.0 7.0 3.5 0.9 114 chr2R 16713053 intron CG30463 - chr2R 16713110 intron CG30463 - chr2R 16713167 intron CG30463 - chr2R_4_16710001 chr2R_16710001 RAL-405 992 chr2R 16741951 16742004 chr2R 16742052 16742105 9 95 2.5 6.0 4.2 1.7 154 chr2R 16741951 intergenic not near genes chr2R 16742028 intergenic not near genes chr2R 16742105 intergenic not near genes chr2R_9_16740001 chr2R_16740001 RAL-405 993 chr2R 16775628 16775653 chr2R 16775912 16775937 6 283 9.5 6.5 8.0 0.7 309 chr2R 16775628 3` UTR Arp53D + chr2R 16775782 intergenic Arp53D + chr2R 16775937 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-405 994 chr2R 16775656 16775673 chr2R 16775907 16775957 15 268 4.0 5.5 4.8 2.6 301 chr2R 16775656 3` UTR Arp53D + chr2R 16775806 intergenic Arp53D + chr2R 16775957 intergenic Arp53D + chr2R_15_16775001 chr2R_16775001 RAL-405 995 chr2R 16833820 16833836 chr2R 16833913 16833919 4 96 6.0 2.5 4.2 0.8 99 chr2R 16833820 5` UTR CR43650 + chr2R 16833870 5` UTR CR43650 + chr2R 16833919 5` UTR CR43650 + chr2R_4_16830001 chr2R_16830001 RAL-405 996 chr2R 16880026 16880061 chr2R 16880112 16880158 7 94 4.5 1.5 3.0 1.8 132 chr2R 16880026 intron CG8910 - chr2R 16880092 intron CG8910 - chr2R 16880158 intron CG8910 - chr2R_7_16880001 chr2R_16880001 RAL-405 997 chr2R 16926840 16926884 chr2R 16926955 16926999 8 114 2.5 0.5 1.5 3.2 159 chr2R 16926840 intron Pkc53E + chr2R 16926920 intron Pkc53E + chr2R 16926999 intron Pkc53E + chr2R_8_16925001 chr2R_16925001 RAL-405 998 chr2R 16930605 16930627 chr2R 16930703 16930725 7 97 0.0 4.5 2.2 2.2 120 chr2R 16930605 intron Pkc53E + chr2R 16930665 intron Pkc53E + chr2R 16930725 intron Pkc53E + chr2R_7_16930001 chr2R_16930001 RAL-405 999 chr2R 16975184 16975222 chr2R 16975281 16975319 11 93 7.5 4.5 6.0 1.6 135 chr2R 16975184 intron Cbp53E + chr2R 16975252 intron Cbp53E + chr2R 16975319 intron Cbp53E + chr2R_11_16975001 chr2R_16975001 RAL-405 1000 chr2R 17048607 17048652 chr2R 17048706 17048751 22 96 6.0 6.0 6.0 3.1 144 chr2R 17048607 3` UTR CG9642 + chr2R 17048679 3` UTR CG9642 + chr2R 17048751 3` UTR CG9642 + chr2R_22_17045001 chr2R_17045001 RAL-405 1001 chr2R 17087443 17087495 chr2R 17087541 17087571 6 78 4.5 0.5 2.5 1.7 128 chr2R 17087443 5` UTR CG30460 - chr2R 17087507 5` UTR CG30460 - chr2R 17087571 5` UTR CG30460 - chr2R_6_17085001 chr2R_17085001 RAL-405 1002 chr2R 17097541 17097548 chr2R 17097613 17097645 5 91 4.5 8.0 6.2 0.7 104 chr2R 17097541 intron GstS1 - chr2R 17097593 intron GstS1 - chr2R 17097645 intron GstS1 - chr2R_5_17095001 chr2R_17095001 RAL-405 1003 chr2R 17098359 17098647 chr2R 17098514 17098747 12 150 9.5 5.5 7.5 1.4 388 chr2R 17098359 intergenic GstS1 - chr2R 17098553 intergenic GstS1 - chr2R 17098747 intergenic GstS1 - chr2R_12_17095001 chr2R_17095001 RAL-405 1004 chr2R 17147226 17147263 chr2R 17152276 17152294 jockey 7 5044 5.0 6.5 5.8 1.0 5068 chr2R 17147226 intergenic not near genes chr2R 17149760 intergenic not near genes chr2R 17152294 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-405 1005 chr2R 17161336 17161364 chr2R 17161563 17161566 7 222 5.5 0.0 2.8 1.8 230 chr2R 17161336 intergenic not near genes chr2R 17161451 intergenic not near genes chr2R 17161566 intergenic not near genes chr2R_7_17160001 chr2R_17160001 RAL-405 1006 chr2R 17169373 17169412 chr2R 17169812 17169837 9 435 4.0 3.5 3.8 1.9 464 chr2R 17169373 intergenic not near genes chr2R 17169605 intergenic not near genes chr2R 17169837 intergenic not near genes chr2R_9_17165001 chr2R_17165001 RAL-405 1007 chr2R 17176364 17176377 chr2R 17182562 17182587 diver 7 6207 2.0 11.0 6.5 0.9 6223 chr2R 17176364 intergenic not near genes chr2R 17179476 intergenic not near genes chr2R 17182587 intergenic not near genes chr2R_7_17175001 chr2R_17175001 RAL-405 1008 chr2R 17236498 17236533 chr2R 17241722 17241757 copia 7 5222 2.0 2.5 2.2 2.2 5259 chr2R 17236498 intron mbl + chr2R 17239128 intron mbl + chr2R 17241757 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-405 1009 chr2R 17257369 17257411 chr2R 17257471 17257516 8 104 3.5 5.5 4.5 1.5 147 chr2R 17257369 intron,exon mbl +,CG43108 - chr2R 17257442 intron,exon mbl +,CG43108 - chr2R 17257516 intron,exon mbl +,CG43108 - chr2R_8_17255001 chr2R_17255001 RAL-405 1010 chr2R 17395268 17395313 chr2R 17395366 17395411 12 94 3.0 8.0 5.5 1.8 143 chr2R 17395268 intron Sip1 + chr2R 17395340 intron Sip1 + chr2R 17395411 intron Sip1 + chr2R_12_17395001 chr2R_17395001 RAL-405 1011 chr2R 17458990 17459037 chr2R 17459090 17459117 22 100 3.5 11.5 7.5 2.6 127 chr2R 17458990 intron CG14478 + chr2R 17459054 intron CG14478 + chr2R 17459117 intron CG14478 + chr2R_22_17455001 chr2R_17455001 RAL-405 1012 chr2R 17470307 17470351 chr2R 17470407 17470436 19 96 5.0 6.0 5.5 2.9 129 chr2R 17470307 intron qkr54B + chr2R 17470372 intron qkr54B + chr2R 17470436 intron qkr54B + chr2R_19_17470001 chr2R_17470001 RAL-405 1013 chr2R 17485899 17485949 chr2R 17490689 17490737 F-element 4 4789 4.5 3.5 4.0 0.8 4838 chr2R 17485899 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490737 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-405 1014 chr2R 17506008 17506014 chr2R 17506079 17506110 5 88 1.0 1.5 1.2 2.3 102 chr2R 17506008 exon CG43164 + chr2R 17506059 intron CG43164 + chr2R 17506110 intron CG43164 + chr2R_5_17505001 chr2R_17505001 RAL-405 1015 chr2R 17708374 17708420 chr2R 17708475 17708521 19 95 2.5 3.5 3.0 4.8 147 chr2R 17708374 intron CG6424 - chr2R 17708448 intron CG6424 - chr2R 17708521 intron CG6424 - chr2R_19_17705001 chr2R_17705001 RAL-405 1016 chr2R 17709967 17710008 chr2R 17710078 17710119 12 104 6.5 3.0 4.8 2.1 152 chr2R 17709967 intron CG6424 - chr2R 17710043 intron CG6424 - chr2R 17710119 intron CG6424 - chr2R_12_17710001 chr2R_17710001 RAL-405 1017 chr2R 17782341 17782394 chr2R 17783564 17783617 pogo 14 1220 5.0 8.0 6.5 1.9 1276 chr2R 17782341 intergenic CG33981 -,fab1 - chr2R 17782979 intergenic not near genes chr2R 17783617 intergenic mir-31a - chr2R_14_17780001 chr2R_17780001 RAL-405 1018 chr2R 17784009 17784055 chr2R 17784265 17784290 pogo 14 250 4.0 3.0 3.5 3.1 281 chr2R 17784009 intergenic mir-31a - chr2R 17784150 intergenic mir-31a - chr2R 17784290 intergenic mir-31a - chr2R_14_17780001 chr2R_17780001 RAL-405 1019 chr2R 17849792 17849831 chr2R 17849959 17849968 19 171 4.0 4.5 4.2 3.7 176 chr2R 17849792 intron olf186-F + chr2R 17849880 intron olf186-F + chr2R 17849968 intron olf186-F + chr2R_19_17845001 chr2R_17845001 RAL-405 1020 chr2R 17918170 17918191 chr2R 17918240 17918278 5 80 8.0 4.5 6.2 0.7 108 chr2R 17918170 intron Elk + chr2R 17918224 intron Elk + chr2R 17918278 intron Elk + chr2R_5_17915001 chr2R_17915001 RAL-405 1021 chr2R 17982918 17982951 chr2R 17983009 17983055 17 96 2.0 3.5 2.8 4.5 137 chr2R 17982918 intron dpr13 - chr2R 17982986 intron dpr13 - chr2R 17983055 intron dpr13 - chr2R_17_17980001 chr2R_17980001 RAL-405 1022 chr2R 18045652 18045701 chr2R 18046024 18046073 jockey 20 368 4.5 9.5 7.0 2.5 421 chr2R 18045652 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046073 intergenic CG5767 - chr2R_20_18045001 chr2R_18045001 RAL-405 1023 chr2R 18111675 18111714 chr2R 18115563 18115602 F-element 19 3887 4.5 5.0 4.8 3.3 3927 chr2R 18111675 intergenic not near genes chr2R 18113638 intergenic not near genes chr2R 18115602 intergenic not near genes chr2R_19_18110001 chr2R_18110001 RAL-405 1024 chr2R 18189689 18189732 chr2R 18189802 18189835 5 111 1.0 0.0 0.5 3.3 146 chr2R 18189689 intron CG33958 - chr2R 18189762 intron CG33958 - chr2R 18189835 intron CG33958 - chr2R_5_18185001 chr2R_18185001 RAL-405 1025 chr2R 18308284 18308289 chr2R 18308397 18308415 4 122 10.0 4.0 7.0 0.5 131 chr2R 18308284 intron sbb - chr2R 18308350 intron sbb - chr2R 18308415 intron sbb - chr2R_4_18305001 chr2R_18305001 RAL-405 1026 chr2R 18308291 18308316 chr2R 18308392 18308442 10 117 4.0 3.0 3.5 2.2 151 chr2R 18308291 intron sbb - chr2R 18308366 intron sbb - chr2R 18308442 intron sbb - chr2R_10_18305001 chr2R_18305001 RAL-405 1027 chr2R 18358387 18358421 chr2R 18372604 18372623 roo 18 14226 5.0 5.0 5.0 3.0 14236 chr2R 18358387 intergenic not near genes chr2R 18365505 intergenic not near genes chr2R 18372623 intergenic not near genes chr2R_18_18365001 chr2R_18365001 RAL-405 1028 chr2R 18398138 18398190 chr2R 18398253 18398276 15 104 6.0 4.5 5.2 2.4 138 chr2R 18398138 intron GstE10 - chr2R 18398207 intron GstE10 - chr2R 18398276 intron GstE10 - chr2R_15_18395001 chr2R_18395001 RAL-405 1029 chr2R 18402496 18402525 chr2R 18402590 18402633 6 100 5.0 4.5 4.8 1.0 137 chr2R 18402496 intergenic not near genes chr2R 18402564 intergenic not near genes chr2R 18402633 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-405 1030 chr2R 18405728 18405787 chr2R 18405829 18405887 18 97 4.5 0.5 2.5 5.1 159 chr2R 18405728 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405887 intergenic GstE6 + chr2R_18_18405001 chr2R_18405001 RAL-405 1031 chr2R 18528179 18528222 chr2R 18528278 18528287 9 76 3.5 1.0 2.2 2.8 108 chr2R 18528179 intron CG10924 + chr2R 18528233 intron CG10924 + chr2R 18528287 intron CG10924 + chr2R_9_18525001 chr2R_18525001 RAL-405 1032 chr2R 18550569 18550608 chr2R 18550668 18550717 13 101 2.5 7.5 5.0 2.2 148 chr2R 18550569 intergenic not near genes chr2R 18550643 intergenic not near genes chr2R 18550717 intergenic not near genes chr2R_13_18550001 chr2R_18550001 RAL-405 1033 chr2R 18575803 18575830 chr2R 18581987 18581987 3S18 10 6187 0.5 3.0 1.8 3.6 6184 chr2R 18575803 intron GEFmeso - chr2R 18578895 intron GEFmeso - chr2R 18581987 intron GEFmeso - chr2R_10_18575001 chr2R_18575001 RAL-405 1034 chr2R 18590866 18590880 chr2R 18600021 18600027 roo 4 9156 5.0 1.0 3.0 1.0 9161 chr2R 18590866 intron GEFmeso - chr2R 18595446 intron GEFmeso - chr2R 18600027 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-405 1035 chr2R 18646386 18646432 chr2R 18646551 18646582 12 161 7.0 6.0 6.5 1.6 196 chr2R 18646386 intron SP2637 - chr2R 18646484 intron SP2637 - chr2R 18646582 intron SP2637 - chr2R_12_18645001 chr2R_18645001 RAL-405 1036 chr2R 18657671 18657720 chr2R 18657964 18658008 17 289 7.0 9.0 8.0 1.9 337 chr2R 18657671 intron SP2637 - chr2R 18657840 intron SP2637 - chr2R 18658008 intron SP2637 - chr2R_17_18655001 chr2R_18655001 RAL-405 1037 chr2R 18692889 18692899 chr2R 18692996 18693006 4 107 7.0 5.5 6.2 0.6 117 chr2R 18692889 intron Sik3 + chr2R 18692948 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-405 1038 chr2R 18715229 18715230 chr2R 18715282 18715323 4 83 2.5 2.5 2.5 1.1 94 chr2R 18715229 intergenic not near genes chr2R 18715276 intergenic not near genes chr2R 18715323 intergenic not near genes chr2R_4_18715001 chr2R_18715001 RAL-405 1039 chr2R 18736769 18736781 chr2R 18736914 18736926 6 145 10.5 9.5 10.0 0.5 157 chr2R 18736769 intron Hs3st-A + chr2R 18736848 intron Hs3st-A + chr2R 18736926 intron Hs3st-A + chr2R_6_18735001 chr2R_18735001 RAL-405 1040 chr2R 18738187 18738230 chr2R 18738283 18738326 16 94 4.0 5.0 4.5 2.9 139 chr2R 18738187 intron Hs3st-A + chr2R 18738256 intron Hs3st-A + chr2R 18738326 intron Hs3st-A + chr2R_16_18735001 chr2R_18735001 RAL-405 1041 chr2R 18824929 18824950 chr2R 18825198 18825238 6 279 1.0 0.0 0.5 4.0 309 chr2R 18824929 intron CG15097 - chr2R 18825084 intron CG15097 - chr2R 18825238 intron CG15097 - chr2R_6_18825001 chr2R_18825001 RAL-405 1042 chr2R 18827697 18827717 chr2R 18827797 18827812 7 98 1.5 4.5 3.0 1.8 115 chr2R 18827697 intron CG15097 - chr2R 18827754 intron CG15097 - chr2R 18827812 intron CG15097 - chr2R_7_18825001 chr2R_18825001 RAL-405 1043 chr2R 18835875 18835893 chr2R 18835977 18835995 7 101 11.0 0.0 5.5 1.1 120 chr2R 18835875 intron CG15083 + chr2R 18835935 intron CG15083 + chr2R 18835995 intron CG15083 + chr2R_7_18835001 chr2R_18835001 RAL-405 1044 chr2R 18862288 18862343 chr2R 18862395 18862476 9 96 0.5 0.5 0.5 6.0 188 chr2R 18862288 intergenic Jheh3 - chr2R 18862382 intergenic Jheh3 -,CG43069 + chr2R 18862476 intergenic CG43069 +,Jheh3 - chr2R_9_18860001 chr2R_18860001 RAL-405 1045 chr2R 18876681 18876718 chr2R 18876792 18876829 4 110 7.0 0.5 3.8 0.8 148 chr2R 18876681 intergenic not near genes chr2R 18876755 intergenic not near genes chr2R 18876829 intergenic not near genes chr2R_4_18875001 chr2R_18875001 RAL-405 1046 chr2R 18921777 18921792 chr2R 18921981 18922002 5 211 5.0 6.5 5.8 0.7 225 chr2R 18921777 intron sano + chr2R 18921890 intron sano + chr2R 18922002 intron sano + chr2R_5_18920001 chr2R_18920001 RAL-405 1047 chr2R 18932915 18932935 chr2R 18933023 18933043 9 107 3.5 6.5 5.0 1.5 128 chr2R 18932915 intron sano + chr2R 18932979 intron sano + chr2R 18933043 intron sano + chr2R_9_18930001 chr2R_18930001 RAL-405 1048 chr2R 18949289 18949338 chr2R 18949393 18949441 12 107 2.0 0.0 1.0 6.0 152 chr2R 18949289 intron sano + chr2R 18949365 intron sano + chr2R 18949441 intron sano + chr2R_12_18945001 chr2R_18945001 RAL-405 1049 chr2R 18959660 18959675 chr2R 18959751 18959801 6 116 2.0 5.0 3.5 1.3 141 chr2R 18959660 intergenic sano + chr2R 18959730 intergenic sano + chr2R 18959801 intergenic sano + chr2R_6_18955001 chr2R_18955001 RAL-405 1050 chr2R 18964898 18964949 chr2R 18964994 18965045 19 94 4.0 9.0 6.5 2.5 147 chr2R 18964898 intergenic not near genes chr2R 18964972 intergenic not near genes chr2R 18965045 intergenic not near genes chr2R_19_18960001 chr2R_18960001 RAL-405 1051 chr2R 18984455 18984495 chr2R 18984729 18984764 5 275 2.5 2.0 2.2 1.6 309 chr2R 18984455 intergenic not near genes chr2R 18984610 intergenic not near genes chr2R 18984764 intergenic not near genes chr2R_5_18980001 chr2R_18980001 RAL-405 1052 chr2R 18992003 18992017 chr2R 18992163 18992177 4 158 6.0 4.5 5.2 0.6 174 chr2R 18992003 intron tn + chr2R 18992090 intron tn + chr2R 18992177 intron tn + chr2R_4_18990001 chr2R_18990001 RAL-405 1053 chr2R 18992018 18992049 chr2R 18992156 18992205 7 153 4.0 3.5 3.8 1.5 187 chr2R 18992018 intron tn + chr2R 18992112 intron tn + chr2R 18992205 intron tn + chr2R_7_18990001 chr2R_18990001 RAL-405 1054 chr2R 19026034 19026059 chr2R 19026150 19026180 9 118 8.0 4.5 6.2 1.2 146 chr2R 19026034 intron 5-HT1B - chr2R 19026107 intron 5-HT1B - chr2R 19026180 intron 5-HT1B - chr2R_9_19025001 chr2R_19025001 RAL-405 1055 chr2R 19067708 19067755 chr2R 19067804 19067829 9 90 6.0 4.5 5.2 1.5 121 chr2R 19067708 intron 5-HT1A + chr2R 19067768 intron 5-HT1A + chr2R 19067829 intron 5-HT1A + chr2R_9_19065001 chr2R_19065001 RAL-405 1056 chr2R 19244457 19244471 chr2R 19244556 19244570 7 99 0.0 5.0 2.5 2.0 113 chr2R 19244457 intergenic not near genes chr2R 19244514 intergenic not near genes chr2R 19244570 intergenic not near genes chr2R_7_19240001 chr2R_19240001 RAL-405 1057 chr2R 19536795 19536841 chr2R 19536912 19536937 6 110 3.0 1.5 2.2 1.9 142 chr2R 19536795 intron sm - chr2R 19536866 intron sm - chr2R 19536937 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-405 1058 chr2R 19537370 19537387 chr2R 19537434 19537478 4 82 1.0 2.5 1.8 1.4 108 chr2R 19537370 intron sm - chr2R 19537424 intron sm - chr2R 19537478 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-405 1059 chr2R 19588734 19588763 chr2R 19588830 19588861 10 95 6.5 2.0 4.2 1.9 127 chr2R 19588734 intron sm - chr2R 19588798 intron sm - chr2R 19588861 intron sm - chr2R_10_19585001 chr2R_19585001 RAL-405 1060 chr2R 19588766 19588780 chr2R 19588829 19588878 6 86 4.5 2.0 3.2 1.4 112 chr2R 19588766 intron sm - chr2R 19588822 intron sm - chr2R 19588878 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-405 1061 chr2R 19639566 19639597 chr2R 19639662 19639693 15 94 6.0 1.0 3.5 3.3 127 chr2R 19639566 intergenic not near genes chr2R 19639630 intergenic not near genes chr2R 19639693 intergenic not near genes chr2R_15_19635001 chr2R_19635001 RAL-405 1062 chr2R 19699884 19699928 chr2R 19699989 19700023 12 101 3.0 10.5 6.8 1.5 139 chr2R 19699884 intergenic Obp56c - chr2R 19699954 intergenic Obp56c - chr2R 19700023 3` UTR Obp56c - chr2R_12_19695001 chr2R_19695001 RAL-405 1063 chr2R 19714693 19714735 chr2R 19714784 19714821 11 92 2.0 3.5 2.8 2.9 128 chr2R 19714693 3` UTR CG8517 + chr2R 19714757 3` UTR CG8517 + chr2R 19714821 3` UTR CG8517 + chr2R_11_19710001 chr2R_19710001 RAL-405 1064 chr2R 19776592 19776619 chr2R 19779934 19779952 jockey 8 3341 5.0 13.5 9.2 0.8 3360 chr2R 19776592 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-405 1065 chr2R 19816081 19816100 chr2R 19816214 19816223 5 131 1.0 0.0 0.5 3.3 142 chr2R 19816081 3` UTR Obp56h + chr2R 19816152 3` UTR Obp56h + chr2R 19816223 intergenic Obp56h + chr2R_5_19815001 chr2R_19815001 RAL-405 1066 chr2R 19914835 19914875 chr2R 19922267 19922307 mdg1 6 7432 11.0 3.5 7.2 0.7 7472 chr2R 19914835 intergenic not near genes chr2R 19918571 intergenic not near genes chr2R 19922307 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-405 1067 chr2R 19943252 19943282 chr2R 19943382 19943407 13 128 3.5 6.0 4.8 2.2 155 chr2R 19943252 intergenic not near genes chr2R 19943330 intergenic not near genes chr2R 19943407 intergenic not near genes chr2R_13_19940001 chr2R_19940001 RAL-405 1068 chr2R 19953732 19953770 chr2R 19953830 19953868 11 98 8.0 7.0 7.5 1.3 136 chr2R 19953732 intergenic CG44622 + chr2R 19953800 5` UTR CG44622 + chr2R 19953868 5` UTR CG44622 + chr2R_11_19950001 chr2R_19950001 RAL-405 1069 chr2R 20016658 20016676 chr2R 20016727 20016752 5 76 2.5 2.5 2.5 1.4 94 chr2R 20016658 3` UTR CR44630 - chr2R 20016705 3` UTR CR44630 - chr2R 20016752 3` UTR CR44630 - chr2R_5_20015001 chr2R_20015001 RAL-405 1070 chr2R 20069230 20069265 chr2R 20071873 20071915 opus 12 2644 3.0 1.0 2.0 4.0 2685 chr2R 20069230 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071915 intergenic not near genes chr2R_12_20070001 chr2R_20070001 RAL-405 1071 chr2R 20161887 20161908 chr2R 20161955 20162006 7 92 0.5 3.5 2.0 2.3 119 chr2R 20161887 intergenic not near genes chr2R 20161946 intergenic not near genes chr2R 20162006 intergenic not near genes chr2R_7_20160001 chr2R_20160001 RAL-405 1072 chr2R 20337172 20337224 chr2R 20337281 20337297 9 103 8.5 0.5 4.5 1.6 125 chr2R 20337172 intergenic not near genes chr2R 20337234 intergenic not near genes chr2R 20337297 intergenic not near genes chr2R_9_20335001 chr2R_20335001 RAL-405 1073 chr2R 20379138 20379147 chr2R 20379241 20379250 6 103 9.5 0.0 4.8 1.0 112 chr2R 20379138 intergenic not near genes chr2R 20379194 intergenic not near genes chr2R 20379250 intergenic not near genes chr2R_6_20375001 chr2R_20375001 RAL-405 1074 chr2R 20398991 20399025 chr2R 20399109 20399140 5 116 2.0 1.5 1.8 1.8 149 chr2R 20398991 intergenic not near genes chr2R 20399066 intergenic not near genes chr2R 20399140 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-405 1075 chr2R 20489891 20489909 chr2R 20490003 20490027 5 116 4.5 11.0 7.8 0.6 136 chr2R 20489891 intergenic not near genes chr2R 20489959 intergenic not near genes chr2R 20490027 intergenic not near genes chr2R_5_20485001 chr2R_20485001 RAL-405 1076 chr2R 20496986 20497017 chr2R 20497149 20497180 5 162 4.0 1.5 2.8 1.3 194 chr2R 20496986 intergenic not near genes chr2R 20497083 intergenic not near genes chr2R 20497180 intergenic not near genes chr2R_5_20495001 chr2R_20495001 RAL-405 1077 chr2R 20511855 20511881 chr2R 20512575 20512587 6 724 2.0 2.5 2.2 1.9 732 chr2R 20511855 intergenic CR44649 +,CR44648 + chr2R 20512221 intergenic CR44649 +,CG13426 - chr2R 20512587 intergenic CG13426 -,CR44649 + chr2R_6_20510001 chr2R_20510001 RAL-405 1078 chr2R 20511884 20511896 chr2R 20512574 20512622 6 707 0.0 2.0 1.0 3.0 738 chr2R 20511884 intergenic CR44649 +,CR44648 + chr2R 20512253 intergenic CR44649 +,CG13426 - chr2R 20512622 intergenic CG13426 - chr2R_6_20510001 chr2R_20510001 RAL-405 1079 chr2R 20523032 20523063 chr2R 20523150 20523159 4 111 1.5 3.0 2.2 1.2 127 chr2R 20523032 intergenic not near genes chr2R 20523096 intergenic not near genes chr2R 20523159 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-405 1080 chr2R 20528770 20528783 chr2R 20528926 20528971 9 175 1.0 6.0 3.5 2.0 201 chr2R 20528770 exon CG30151 - chr2R 20528870 exon CG30151 - chr2R 20528971 exon CG30151 - chr2R_9_20525001 chr2R_20525001 RAL-405 1081 chr2R 20541973 20542015 chr2R 20542066 20542113 20 94 3.5 3.5 3.5 4.4 140 chr2R 20541973 intergenic not near genes chr2R 20542043 intergenic not near genes chr2R 20542113 intergenic not near genes chr2R_20_20540001 chr2R_20540001 RAL-405 1082 chr2R 20572569 20572585 chr2R 20572663 20572695 7 106 7.0 4.5 5.8 1.0 126 chr2R 20572569 intron qsm - chr2R 20572632 intron qsm - chr2R 20572695 intron qsm - chr2R_7_20570001 chr2R_20570001 RAL-405 1083 chr2R 20577072 20577096 chr2R 20577175 20577199 5 101 2.5 1.5 2.0 1.7 127 chr2R 20577072 intron qsm - chr2R 20577136 intron qsm - chr2R 20577199 intron qsm - chr2R_5_20575001 chr2R_20575001 RAL-405 1084 chr2R 20700032 20700077 chr2R 20700131 20700132 6 74 5.5 0.5 3.0 1.5 100 chr2R 20700032 intron dpr + chr2R 20700082 intron dpr + chr2R 20700132 intron dpr + chr2R_6_20700001 chr2R_20700001 RAL-405 1085 chr2R 20701023 20701032 chr2R 20701140 20701154 4 119 6.0 0.0 3.0 1.0 131 chr2R 20701023 intron dpr + chr2R 20701088 intron dpr + chr2R 20701154 intron dpr + chr2R_4_20700001 chr2R_20700001 RAL-405 1086 chr2R 20783291 20783332 chr2R 20788083 20788110 F-element 7 4787 0.5 4.0 2.2 2.2 4819 chr2R 20783291 intergenic not near genes chr2R 20785700 intergenic not near genes chr2R 20788110 intergenic CG43666 - chr2R_7_20785001 chr2R_20785001 RAL-405 1087 chr2R 20848907 20848959 chr2R 20849013 20849065 16 104 4.0 5.0 4.5 2.9 158 chr2R 20848907 exon CG17999 - chr2R 20848986 intron CG17999 - chr2R 20849065 intron CG17999 - chr2R_16_20845001 chr2R_20845001 RAL-405 1088 chr2R 20962887 20962939 chr2R 20963003 20963039 17 109 5.0 5.5 5.2 2.7 152 chr2R 20962887 intergenic not near genes chr2R 20962963 intergenic not near genes chr2R 20963039 intergenic not near genes chr2R_17_20960001 chr2R_20960001 RAL-405 1089 chr2R 20967016 20967056 chr2R 20967102 20967148 9 93 3.5 0.0 1.8 3.2 132 chr2R 20967016 intergenic not near genes chr2R 20967082 intergenic not near genes chr2R 20967148 intergenic not near genes chr2R_9_20965001 chr2R_20965001 RAL-405 1090 chr2R 21060620 21060626 chr2R 21060716 21060722 4 96 14.5 6.5 10.5 0.3 102 chr2R 21060620 intergenic CG15653 -,mRpL54 + chr2R 21060671 intergenic mRpL54 +,CG15653 - chr2R 21060722 intergenic mRpL54 +,CG15653 - chr2R_4_21060001 chr2R_21060001 RAL-405 1091 chr2R 21060629 21060654 chr2R 21060710 21060730 6 83 5.5 5.5 5.5 0.9 101 chr2R 21060629 intergenic CG15653 -,mRpL54 + chr2R 21060680 intergenic mRpL54 +,CG15653 - chr2R 21060730 intergenic mRpL54 +,CG15653 - chr2R_6_21060001 chr2R_21060001 RAL-405 1092 chr2R 21106513 21106523 chr2R 21106648 21106648 6 132 0.0 7.0 3.5 1.3 135 chr2R 21106513 intron ktub + chr2R 21106580 intron ktub + chr2R 21106648 intron ktub + chr2R_6_21105001 chr2R_21105001 RAL-405 1093 chr2R 21106524 21106533 chr2R 21106640 21106663 6 127 0.0 4.5 2.2 1.9 139 chr2R 21106524 intron ktub + chr2R 21106594 intron ktub + chr2R 21106663 intron ktub + chr2R_6_21105001 chr2R_21105001 RAL-405 1094 chr2R 21106535 21106547 chr2R 21106630 21106657 5 114 0.0 3.5 1.8 1.8 122 chr2R 21106535 intron ktub + chr2R 21106596 intron ktub + chr2R 21106657 intron ktub + chr2R_5_21105001 chr2R_21105001 RAL-405 1095 chr2R 21107908 21107945 chr2R 21108122 21108159 16 211 5.0 4.0 4.5 2.9 251 chr2R 21107908 intron ktub + chr2R 21108034 intron ktub + chr2R 21108159 intron ktub + chr2R_16_21105001 chr2R_21105001 RAL-405 1096 chr2R 21182911 21182934 chr2R 21183153 21183163 7 242 0.5 3.0 1.8 2.5 252 chr2R 21182911 intergenic Pu +,tud + chr2R 21183037 intergenic tud +,Pu + chr2R 21183163 intergenic tud + chr2R_7_21180001 chr2R_21180001 RAL-405 1097 chr2R 21247706 21247727 chr2R 21247809 21247830 5 95 4.0 3.0 3.5 1.1 124 chr2R 21247706 intron ASPP - chr2R 21247768 intron ASPP - chr2R 21247830 intron ASPP - chr2R_5_21245001 chr2R_21245001 RAL-405 1098 chr2R 21275374 21275400 chr2R 21275481 21275507 4 107 0.0 0.0 0.0 4.0 133 chr2R 21275374 intron Rgk3 + chr2R 21275440 intron Rgk3 + chr2R 21275507 intron Rgk3 + chr2R_4_21275001 chr2R_21275001 RAL-405 1099 chr2R 21344433 21344462 chr2R 21344539 21344567 11 105 3.0 7.0 5.0 1.8 134 chr2R 21344433 exon CG15666 + chr2R 21344500 intron CG15666 + chr2R 21344567 intron CG15666 + chr2R_11_21340001 chr2R_21340001 RAL-405 1100 chr2R 21363118 21363177 chr2R 21363236 21363286 9 117 0.0 0.5 0.2 7.5 168 chr2R 21363118 intron cv-2 - chr2R 21363202 intron cv-2 - chr2R 21363286 intron cv-2 - chr2R_9_21360001 chr2R_21360001 RAL-405 1101 chr2R 21369349 21369374 chr2R 21369527 21369543 4 176 2.0 0.0 1.0 2.0 194 chr2R 21369349 intron cv-2 - chr2R 21369446 intron cv-2 - chr2R 21369543 intron cv-2 - chr2R_4_21365001 chr2R_21365001 RAL-405 1102 chr2R 21417258 21417278 chr2R 21417379 21417387 5 119 7.5 1.0 4.2 1.0 129 chr2R 21417258 intron Sdc - chr2R 21417322 intron Sdc - chr2R 21417387 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-405 1103 chr2R 21421328 21421345 chr2R 21421422 21421444 7 97 10.5 14.0 12.2 0.5 116 chr2R 21421328 intron Sdc - chr2R 21421386 intron Sdc - chr2R 21421444 intron Sdc - chr2R_7_21420001 chr2R_21420001 RAL-405 1104 chr2R 21481212 21481230 chr2R 21481368 21481401 5 161 8.0 3.5 5.8 0.7 189 chr2R 21481212 intergenic Sdc - chr2R 21481306 intergenic Sdc - chr2R 21481401 intergenic Sdc - chr2R_5_21480001 chr2R_21480001 RAL-405 1105 chr2R 21509081 21509126 chr2R 21509699 21509729 7 611 4.5 1.5 3.0 1.8 648 chr2R 21509081 intron MESK2 + chr2R 21509405 intron MESK2 + chr2R 21509729 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-405 1106 chr2R 21540676 21540691 chr2R 21540909 21540929 7 237 3.5 6.5 5.0 1.2 253 chr2R 21540676 intron Egfr + chr2R 21540802 intron Egfr + chr2R 21540929 intron Egfr + chr2R_7_21540001 chr2R_21540001 RAL-405 1107 chr2R 21721603 21721607 chr2R 21721670 21721693 5 87 2.0 6.5 4.2 1.0 90 chr2R 21721603 intron LBR + chr2R 21721648 intron LBR + chr2R 21721693 intron LBR + chr2R_5_21720001 chr2R_21720001 RAL-405 1108 chr2R 21753083 21753107 chr2R 21753573 21753611 roo 14 500 5.0 5.0 5.0 2.3 528 chr2R 21753083 intergenic not near genes chr2R 21753347 intergenic not near genes chr2R 21753611 intergenic not near genes chr2R_14_21750001 chr2R_21750001 RAL-405 1109 chr2R 21759550 21759563 chr2R 21759654 21759658 4 100 4.5 9.0 6.8 0.5 108 chr2R 21759550 intergenic not near genes chr2R 21759604 intergenic not near genes chr2R 21759658 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-405 1110 chr2R 21759565 21759585 chr2R 21759652 21759667 5 85 4.0 9.0 6.5 0.7 102 chr2R 21759565 intergenic not near genes chr2R 21759616 intergenic not near genes chr2R 21759667 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-405 1111 chr2R 21809510 21809553 chr2R 21817770 21817797 roo 17 8253 6.0 4.0 5.0 2.8 8287 chr2R 21809510 intergenic not near genes chr2R 21813654 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_17_21810001 chr2R_21810001 RAL-405 1112 chr2R 21830211 21830233 chr2R 21830300 21830305 6 90 4.0 3.5 3.8 1.2 94 chr2R 21830211 intron CG13492 - chr2R 21830258 intron CG13492 - chr2R 21830305 intron CG13492 - chr2R_6_21830001 chr2R_21830001 RAL-405 1113 chr2R 21841479 21841493 chr2R 21841569 21841573 4 93 1.5 2.5 2.0 1.3 94 chr2R 21841479 intergenic not near genes chr2R 21841526 intergenic not near genes chr2R 21841573 intergenic not near genes chr2R_4_21840001 chr2R_21840001 RAL-405 1114 chr2R 21878538 21878562 chr2R 21878622 21878625 4 83 3.5 4.5 4.0 0.8 87 chr2R 21878538 intron Fili + chr2R 21878582 intron Fili + chr2R 21878625 intron Fili + chr2R_4_21875001 chr2R_21875001 RAL-405 1115 chr2R 21894868 21894919 chr2R 21894966 21895009 4 88 1.0 2.5 1.8 1.4 141 chr2R 21894868 intron Fili + chr2R 21894938 intron Fili + chr2R 21895009 intron Fili + chr2R_4_21890001 chr2R_21890001 RAL-405 1116 chr2R 21906250 21906296 chr2R 21906371 21906417 17 120 2.5 1.5 2.0 5.7 167 chr2R 21906250 intron Fili + chr2R 21906334 intron Fili + chr2R 21906417 intron Fili + chr2R_17_21905001 chr2R_21905001 RAL-405 1117 chr2R 21919863 21919902 chr2R 21919958 21919987 6 97 2.0 3.5 2.8 1.6 124 chr2R 21919863 intron Fili + chr2R 21919925 intron Fili + chr2R 21919987 intron Fili + chr2R_6_21915001 chr2R_21915001 RAL-405 1118 chr2R 21992401 21992428 chr2R 21992498 21992500 6 91 1.0 4.0 2.5 1.7 99 chr2R 21992401 intron CG34370 - chr2R 21992450 intron CG34370 - chr2R 21992500 intron CG34370 - chr2R_6_21990001 chr2R_21990001 RAL-405 1119 chr2R 22029517 22029531 chr2R 22029602 22029629 9 97 4.0 0.5 2.2 2.8 112 chr2R 22029517 intron CG34370 - chr2R 22029573 intron CG34370 - chr2R 22029629 intron CG34370 - chr2R_9_22025001 chr2R_22025001 RAL-405 1120 chr2R 22037755 22037806 chr2R 22037857 22037898 9 97 5.0 2.0 3.5 2.0 143 chr2R 22037755 intron CG34370 - chr2R 22037826 intron CG34370 - chr2R 22037898 intron CG34370 - chr2R_9_22035001 chr2R_22035001 RAL-405 1121 chr2R 22072689 22072709 chr2R 22072779 22072793 11 98 3.5 4.5 4.0 2.2 104 chr2R 22072689 intron CG11474 - chr2R 22072741 intron CG11474 - chr2R 22072793 intron CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-405 1122 chr2R 22185668 22185680 chr2R 22185787 22185799 6 119 5.0 1.0 3.0 1.5 131 chr2R 22185668 3` UTR MED16 + chr2R 22185734 3` UTR MED16 + chr2R 22185799 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-405 1123 chr2R 22185683 22185699 chr2R 22185777 22185801 6 108 3.5 1.0 2.2 1.9 118 chr2R 22185683 3` UTR MED16 + chr2R 22185742 3` UTR MED16 + chr2R 22185801 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-405 1124 chr2R 22189444 22189476 chr2R 22189587 22189623 4 146 1.5 2.0 1.8 1.4 179 chr2R 22189444 3` UTR Vps35 + chr2R 22189534 3` UTR Vps35 + chr2R 22189623 3` UTR Vps35 + chr2R_4_22185001 chr2R_22185001 RAL-405 1125 chr2R 22258485 22258532 chr2R 22258631 22258678 8 142 1.5 0.5 1.0 4.0 193 chr2R 22258485 intron dve + chr2R 22258582 intron dve + chr2R 22258678 intron dve + chr2R_8_22255001 chr2R_22255001 RAL-405 1126 chr2R 22290061 22290086 chr2R 22290165 22290190 8 104 9.0 9.5 9.2 0.8 129 chr2R 22290061 intergenic not near genes chr2R 22290126 intergenic not near genes chr2R 22290190 intergenic not near genes chr2R_8_22290001 chr2R_22290001 RAL-405 1127 chr2R 22360373 22360383 chr2R 22360816 22360831 jockey 5 446 8.5 1.5 5.0 0.8 458 chr2R 22360373 intron Liprin-gamma - chr2R 22360602 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-405 1128 chr2R 22362641 22362687 chr2R 22362740 22362781 15 98 2.5 6.5 4.5 2.7 140 chr2R 22362641 intron Liprin-gamma - chr2R 22362711 intron Liprin-gamma - chr2R 22362781 intron Liprin-gamma - chr2R_15_22360001 chr2R_22360001 RAL-405 1129 chr2R 22411481 22411527 chr2R 22411579 22411625 10 95 4.0 5.0 4.5 1.8 144 chr2R 22411481 5` UTR qkr58E-3 - chr2R 22411553 intergenic qkr58E-3 -,Mes4 + chr2R 22411625 intergenic qkr58E-3 -,Mes4 + chr2R_10_22410001 chr2R_22410001 RAL-405 1130 chr2R 22418633 22418660 chr2R 22418868 22418907 17 242 13.0 8.0 10.5 1.5 274 chr2R 22418633 3` UTR qkr58E-2 + chr2R 22418770 3` UTR qkr58E-2 + chr2R 22418907 3` UTR qkr58E-2 + chr2R_17_22415001 chr2R_22415001 RAL-405 1131 chr2R 22453201 22453210 chr2R 22453324 22453333 4 123 0.0 6.0 3.0 1.0 132 chr2R 22453201 intergenic not near genes chr2R 22453267 intergenic not near genes chr2R 22453333 intergenic not near genes chr2R_4_22450001 chr2R_22450001 RAL-405 1132 chr2R 22460360 22460405 chr2R 22460459 22460499 21 95 7.5 3.5 5.5 3.2 139 chr2R 22460360 intron CG10384 + chr2R 22460430 intron CG10384 + chr2R 22460499 intron CG10384 + chr2R_21_22460001 chr2R_22460001 RAL-405 1133 chr2R 22503858 22503875 chr2R 22503972 22503989 10 113 0.5 2.5 1.5 4.0 131 chr2R 22503858 intron px - chr2R 22503924 intron px - chr2R 22503989 intron px - chr2R_10_22500001 chr2R_22500001 RAL-405 1134 chr2R 22506696 22506724 chr2R 22506794 22506822 12 95 4.0 1.5 2.8 3.2 126 chr2R 22506696 intron px - chr2R 22506759 intron px - chr2R 22506822 intron px - chr2R_12_22505001 chr2R_22505001 RAL-405 1135 chr2R 22599148 22599186 chr2R 22599258 22599264 5 97 0.5 2.5 1.5 2.0 116 chr2R 22599148 intron CG4269 + chr2R 22599206 intron CG4269 + chr2R 22599264 intron CG4269 + chr2R_5_22595001 chr2R_22595001 RAL-405 1136 chr2R 22605914 22605935 chr2R 22606014 22606035 9 100 1.5 1.5 1.5 3.6 121 chr2R 22605914 intron RpS16 + chr2R 22605974 intron RpS16 + chr2R 22606035 5` UTR RpS16 + chr2R_9_22605001 chr2R_22605001 RAL-405 1137 chr2R 22623431 22623481 chr2R 22623591 22623632 14 151 6.5 3.5 5.0 2.3 201 chr2R 22623431 intron CG33143 + chr2R 22623532 intron CG33143 + chr2R 22623632 intron CG33143 + chr2R_14_22620001 chr2R_22620001 RAL-405 1138 chr2R 22646450 22646466 chr2R 22646562 22646569 9 109 7.0 0.0 3.5 2.0 119 chr2R 22646450 intergenic CG2852 -,CG30195 - chr2R 22646510 intergenic CG30195 -,CG2852 - chr2R 22646569 intergenic CG30195 -,CG2852 - chr2R_9_22645001 chr2R_22645001 RAL-405 1139 chr2R 22654361 22654401 chr2R 22654449 22654474 5 90 1.0 6.0 3.5 1.1 113 chr2R 22654361 exon Cyp6d2 - chr2R 22654418 5` UTR Cyp6d2 - chr2R 22654474 5` UTR Cyp6d2 - chr2R_5_22650001 chr2R_22650001 RAL-405 1140 chr2R 22691747 22691773 chr2R 22691859 22691895 5 118 1.5 5.0 3.2 1.2 148 chr2R 22691747 5` UTR CR44764 + chr2R 22691821 5` UTR CR44764 + chr2R 22691895 5` UTR CR44764 + chr2R_5_22690001 chr2R_22690001 RAL-405 1141 chr2R 22729453 22729468 chr2R 22729681 22729696 INE-1 4 228 0.5 9.0 4.8 0.7 243 chr2R 22729453 intron jbug - chr2R 22729574 intron jbug - chr2R 22729696 intron jbug - chr2R_4_22725001 chr2R_22725001 RAL-405 1142 chr2R 22774940 22774999 chr2R 22775379 22775435 jockey 14 434 3.0 2.5 2.8 3.7 495 chr2R 22774940 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775435 intron CG42260 - chr2R_14_22775001 chr2R_22775001 RAL-405 1143 chr2R 22785711 22785757 chr2R 22785809 22785855 12 96 3.5 2.0 2.8 3.2 144 chr2R 22785711 intron CG42260 - chr2R 22785783 intron CG42260 - chr2R 22785855 intron CG42260 - chr2R_12_22785001 chr2R_22785001 RAL-405 1144 chr2R 22787579 22787593 chr2R 22787732 22787741 4 152 1.5 4.0 2.8 1.1 162 chr2R 22787579 intron CG42260 - chr2R 22787660 intron CG42260 - chr2R 22787741 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-405 1145 chr2R 22789802 22789834 chr2R 22790108 22790120 9 300 3.5 5.5 4.5 1.6 318 chr2R 22789802 intron CG42260 - chr2R 22789961 intron CG42260 - chr2R 22790120 intron CG42260 - chr2R_9_22785001 chr2R_22785001 RAL-405 1146 chr2R 22843015 22843024 chr2R 22844997 22845001 flea 6 1981 7.0 8.0 7.5 0.7 1986 chr2R 22843015 intergenic CG9826 + chr2R 22844008 intergenic not near genes chr2R 22845001 intergenic not near genes chr2R_6_22840001 chr2R_22840001 RAL-405 1147 chr2R 22843037 22843046 chr2R 22844994 22845028 flea 7 1978 3.0 7.5 5.2 1.1 1991 chr2R 22843037 intergenic CG9826 + chr2R 22844032 intergenic not near genes chr2R 22845028 intergenic not near genes chr2R_7_22840001 chr2R_22840001 RAL-405 1148 chr2R 22951816 22951853 chr2R 22951922 22951959 10 104 8.5 5.0 6.8 1.3 143 chr2R 22951816 3` UTR CR32835 - chr2R 22951888 3` UTR CR32835 - chr2R 22951959 intron CR32835 - chr2R_10_22950001 chr2R_22950001 RAL-405 1149 chr2R 22951854 22951863 chr2R 22951920 22951969 5 97 5.5 5.0 5.2 0.8 115 chr2R 22951854 3` UTR CR32835 - chr2R 22951912 3` UTR CR32835 - chr2R 22951969 intron CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-405 1150 chr2R 22988612 22988651 chr2R 22988712 22988741 10 97 2.0 5.5 3.8 2.1 129 chr2R 22988612 intron twi + chr2R 22988676 intron twi + chr2R 22988741 intron twi + chr2R_10_22985001 chr2R_22985001 RAL-405 1151 chr2R 23045336 23045347 chr2R 23045560 23045561 5 226 3.0 7.0 5.0 0.8 225 chr2R 23045336 intron twi + chr2R 23045448 intron twi + chr2R 23045561 intron twi + chr2R_5_23045001 chr2R_23045001 RAL-405 1152 chr2R 23052633 23052681 chr2R 23052728 23052766 23 90 10.5 7.0 8.8 2.3 133 chr2R 23052633 intergenic not near genes chr2R 23052700 intergenic not near genes chr2R 23052766 intergenic not near genes chr2R_23_23050001 chr2R_23050001 RAL-405 1153 chr2R 23061760 23061791 chr2R 23061869 23061905 7 108 5.0 7.0 6.0 1.0 145 chr2R 23061760 3` UTR l(2)06496 - chr2R 23061832 3` UTR l(2)06496 - chr2R 23061905 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-405 1154 chr2R 23188534 23188578 chr2R 23188632 23188676 10 96 6.0 6.0 6.0 1.4 142 chr2R 23188534 intron CG34371 - chr2R 23188605 intron CG34371 - chr2R 23188676 intron CG34371 - chr2R_10_23185001 chr2R_23185001 RAL-405 1155 chr2R 23338762 23338783 chr2R 23338867 23338880 5 103 4.0 6.5 5.2 0.8 118 chr2R 23338762 intergenic not near genes chr2R 23338821 intergenic not near genes chr2R 23338880 intergenic not near genes chr2R_5_23335001 chr2R_23335001 RAL-405 1156 chr2R 23402593 23402640 chr2R 23407684 23407710 flea 18 5088 6.0 7.5 6.8 2.3 5117 chr2R 23402593 intergenic CG3520 - chr2R 23405152 intergenic not near genes chr2R 23407710 intergenic not near genes chr2R_18_23405001 chr2R_23405001 RAL-405 1157 chr2R 23423718 23423774 chr2R 23423896 23423952 18 171 0.5 5.5 3.0 4.5 234 chr2R 23423718 intron CG9815 - chr2R 23423835 intron CG9815 - chr2R 23423952 intron CG9815 - chr2R_18_23420001 chr2R_23420001 RAL-405 1158 chr2R 23487428 23487478 chr2R 23487530 23487539 4 92 3.5 5.0 4.2 0.8 111 chr2R 23487428 intron CG43795 + chr2R 23487484 intron CG43795 + chr2R 23487539 intron CG43795 + chr2R_4_23485001 chr2R_23485001 RAL-405 1159 chr2R 23508898 23508934 chr2R 23509035 23509071 13 137 9.5 4.0 6.8 1.7 173 chr2R 23508898 intergenic not near genes chr2R 23508984 intergenic not near genes chr2R 23509071 intergenic not near genes chr2R_13_23505001 chr2R_23505001 RAL-405 1160 chr2R 23635691 23635724 chr2R 23635787 23635806 8 88 1.5 1.5 1.5 3.2 115 chr2R 23635691 intron retn + chr2R 23635748 intron retn + chr2R 23635806 intron retn + chr2R_8_23635001 chr2R_23635001 RAL-405 1161 chr2R 23674173 23674192 chr2R 23674268 23674292 12 95 4.5 2.5 3.5 2.7 119 chr2R 23674173 intron Pde8 + chr2R 23674232 intron Pde8 + chr2R 23674292 exon Pde8 + chr2R_12_23670001 chr2R_23670001 RAL-405 1162 chr2R 23914282 23914331 chr2R 23921923 23921940 412 9 7626 0.5 1.5 1.0 4.5 7658 chr2R 23914282 exon kcc + chr2R 23918111 intron kcc + chr2R 23921940 intron kcc + chr2R_9_23915001 chr2R_23915001 RAL-405 1163 chr2R 23994140 23994165 chr2R 23994231 23994246 9 90 7.0 3.5 5.2 1.5 106 chr2R 23994140 intron CG3860 - chr2R 23994193 intron CG3860 - chr2R 23994246 intron CG3860 - chr2R_9_23990001 chr2R_23990001 RAL-405 1164 chr2R 24008396 24008441 chr2R 24008496 24008537 18 101 8.5 5.0 6.8 2.3 141 chr2R 24008396 intron Unc-89 - chr2R 24008466 intron Unc-89 - chr2R 24008537 intron Unc-89 - chr2R_18_24005001 chr2R_24005001 RAL-405 1165 chr2R 24031361 24031413 chr2R 24031465 24031517 15 101 3.5 6.0 4.8 2.6 156 chr2R 24031361 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031517 intergenic Chi -,CG30172 - chr2R_15_24030001 chr2R_24030001 RAL-405 1166 chr2R 24077908 24077955 chr2R 24078004 24078026 12 84 3.0 3.0 3.0 3.0 118 chr2R 24077908 3` UTR Mlp60A + chr2R 24077967 3` UTR Mlp60A + chr2R 24078026 3` UTR Mlp60A + chr2R_12_24075001 chr2R_24075001 RAL-405 1167 chr2R 24177214 24177267 chr2R 24184719 24184737 412 13 7501 8.0 8.0 8.0 1.4 7523 chr2R 24177214 3` UTR Nop60B + chr2R 24180976 intron Nop60B + chr2R 24184737 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-405 1168 chr2R 24353423 24353441 chr2R 24361788 24361822 roo 8 8372 7.5 5.0 6.2 1.1 8399 chr2R 24353423 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 RAL-405 1169 chr2R 24383816 24383821 chr2R 24383917 24383922 4 101 9.0 1.5 5.2 0.6 106 chr2R 24383816 intron mAChR-A - chr2R 24383869 intron mAChR-A - chr2R 24383922 intron mAChR-A - chr2R_4_24380001 chr2R_24380001 RAL-405 1170 chr2R 24415299 24415346 chr2R 24415399 24415451 18 101 5.0 3.0 4.0 3.6 152 chr2R 24415299 intergenic CG45068 +,CG45069 +,prom - chr2R 24415375 intergenic prom -,CG45068 +,CG45069 + chr2R 24415451 3` UTR prom - chr2R_18_24415001 chr2R_24415001 RAL-405 1171 chr2R 24430700 24430950 chr2R 24430854 24431053 9 112 0.0 0.0 0.0 9.0 353 chr2R 24430700 intergenic CG15873 - chr2R 24430876 intergenic CG15873 -,Pgam5-2 - chr2R 24431053 intergenic Pgam5-2 -,CG15873 - chr2R_9_24430001 chr2R_24430001 RAL-405 1172 chr2R 24442666 24442714 chr2R 24442819 24442853 17 145 2.0 1.5 1.8 6.1 187 chr2R 24442666 intergenic not near genes chr2R 24442760 intergenic not near genes chr2R 24442853 intergenic not near genes chr2R_17_24440001 chr2R_24440001 RAL-405 1173 chr2R 24456046 24456066 chr2R 24456146 24456166 5 100 12.0 3.5 7.8 0.6 120 chr2R 24456046 intron CG13579 + chr2R 24456106 intron CG13579 + chr2R 24456166 intron CG13579 + chr2R_5_24455001 chr2R_24455001 RAL-405 1174 chr2R 24456073 24456098 chr2R 24456143 24456198 9 92 6.5 4.5 5.5 1.4 125 chr2R 24456073 intron CG13579 + chr2R 24456136 intron CG13579 + chr2R 24456198 intron CG13579 + chr2R_9_24455001 chr2R_24455001 RAL-405 1175 chr2R 24633976 24634025 chr2R 24634077 24634080 13 87 2.5 0.5 1.5 5.2 104 chr2R 24633976 intron CG13594 - chr2R 24634028 intron CG13594 - chr2R 24634080 intron CG13594 - chr2R_13_24630001 chr2R_24630001 RAL-405 1176 chr2R 24636884 24636913 chr2R 24636990 24637019 15 104 2.0 0.0 1.0 7.5 135 chr2R 24636884 intron CG13594 - chr2R 24636952 intron CG13594 - chr2R 24637019 intron CG13594 - chr2R_15_24635001 chr2R_24635001 RAL-405 1177 chr2R 24687656 24687666 chr2R 24687728 24687771 5 92 2.5 6.5 4.5 0.9 115 chr2R 24687656 intergenic Mmp1 - chr2R 24687714 intergenic Mmp1 - chr2R 24687771 intergenic Mmp1 - chr2R_5_24685001 chr2R_24685001 RAL-405 1178 chr2R 24859822 24859871 chr2R 24859927 24859935 5 92 1.0 1.0 1.0 2.5 113 chr2R 24859822 5` UTR CR44829 + chr2R 24859878 5` UTR CR44829 + chr2R 24859935 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-405 1179 chr2R 24884032 24884076 chr2R 24884134 24884178 19 99 8.5 6.5 7.5 2.2 146 chr2R 24884032 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884178 intron NKAIN + chr2R_19_24880001 chr2R_24880001 RAL-405 1180 chr2R 25022623 25022664 chr2R 25022723 25022748 13 99 6.5 9.0 7.8 1.5 125 chr2R 25022623 intron uzip + chr2R 25022686 intron uzip + chr2R 25022748 intron uzip + chr2R_13_25020001 chr2R_25020001 RAL-405 1181 chr2R 25101273 25101304 chr2R 25101389 25101400 5 111 5.5 2.0 3.8 1.0 127 chr2R 25101273 intron lov - chr2R 25101336 intron lov - chr2R 25101400 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-405 1182 chr2R 25104756 25104796 chr2R 25104901 25104941 8 143 4.5 0.5 2.5 2.3 185 chr2R 25104756 intron lov - chr2R 25104848 intron lov - chr2R 25104941 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-405 1183 chr2R 25141633 25141680 chr2R 25159343 25159390 roo 9 17700 4.0 5.5 4.8 1.6 17757 chr2R 25141633 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159390 intergenic not near genes chr2R_9_25150001 chr2R_25150001 RAL-405 1184 chr2R 25172368 25172405 chr2R 25176444 25176481 9 4075 35.0 21.0 28.0 0.3 4113 chr2R 25172368 3` UTR Sfp60F - chr2R 25174424 intergenic PebII - chr2R 25176481 exon Peb - chr2R_9_25170001 chr2R_25170001 RAL-405 1185 chr2R 25193320 25193369 chr2R 25193482 25193528 9 159 4.5 4.5 4.5 1.6 208 chr2R 25193320 intron CG9380 - chr2R 25193424 intron CG9380 - chr2R 25193528 intron CG9380 - chr2R_9_25190001 chr2R_25190001 RAL-405 1186 chr3L 109502 109544 chr3L 109604 109652 13 103 4.5 6.5 5.5 2.0 150 chr3L 109502 intergenic not near genes chr3L 109577 intergenic not near genes chr3L 109652 intergenic not near genes chr3L_13_105001 chr3L_105001 RAL-405 1187 chr3L 110200 110240 chr3L 119376 119412 roo 15 9176 6.5 3.5 5.0 2.5 9212 chr3L 110200 intergenic not near genes chr3L 114806 intergenic not near genes chr3L 119412 intergenic not near genes chr3L_15_110001 chr3L_110001 RAL-405 1188 chr3L 390944 390986 chr3L 391070 391112 5 122 1.5 7.0 4.2 1.0 168 chr3L 390944 intron trh - chr3L 391028 intron trh - chr3L 391112 intron trh - chr3L_5_390001 chr3L_390001 RAL-405 1189 chr3L 402699 402712 chr3L 409741 409785 297 4 7063 1.5 10.0 5.8 0.6 7086 chr3L 402699 intergenic not near genes chr3L 406242 intergenic not near genes chr3L 409785 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-405 1190 chr3L 491640 491662 chr3L 491736 491748 6 96 8.0 9.5 8.8 0.6 108 chr3L 491640 intron klar - chr3L 491694 intron klar - chr3L 491748 intron klar - chr3L_6_490001 chr3L_490001 RAL-405 1191 chr3L 494589 494614 chr3L 494671 494699 6 91 7.5 0.0 3.8 1.2 110 chr3L 494589 intron klar - chr3L 494644 intron klar - chr3L 494699 intron klar - chr3L_6_490001 chr3L_490001 RAL-405 1192 chr3L 514916 514960 chr3L 515018 515062 9 101 7.0 5.0 6.0 1.3 146 chr3L 514916 intron klar - chr3L 514989 intron klar - chr3L 515062 intron klar - chr3L_9_510001 chr3L_510001 RAL-405 1193 chr3L 534777 534805 chr3L 535048 535081 7 275 0.0 4.5 2.2 2.2 304 chr3L 534777 intron klar - chr3L 534929 intron klar - chr3L 535081 intron klar - chr3L_7_530001 chr3L_530001 RAL-405 1194 chr3L 557720 557766 chr3L 557924 557949 14 204 4.0 4.5 4.2 2.7 229 chr3L 557720 intron hipk + chr3L 557834 intron hipk + chr3L 557949 intron hipk + chr3L_14_555001 chr3L_555001 RAL-405 1195 chr3L 559507 559540 chr3L 559916 559928 5 405 2.5 7.0 4.8 0.9 421 chr3L 559507 intron hipk + chr3L 559718 intron hipk + chr3L 559928 intron hipk + chr3L_5_555001 chr3L_555001 RAL-405 1196 chr3L 606880 606921 chr3L 606976 607020 4 97 3.0 0.0 1.5 1.6 140 chr3L 606880 intergenic Reg-2 - chr3L 606950 intergenic Reg-2 - chr3L 607020 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-405 1197 chr3L 642459 642498 chr3L 642565 642578 8 106 4.0 8.0 6.0 1.1 119 chr3L 642459 5` UTR CR43334 + chr3L 642518 5` UTR CR43334 + chr3L 642578 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-405 1198 chr3L 651372 651422 chr3L 651479 651495 23 97 4.0 8.0 6.0 3.3 123 chr3L 651372 intergenic Gale +,CG3402 - chr3L 651434 intergenic CG3402 -,Gale + chr3L 651495 intergenic CG3402 -,Gale + chr3L_23_650001 chr3L_650001 RAL-405 1199 chr3L 705224 705262 chr3L 705320 705353 9 93 2.5 3.5 3.0 2.2 129 chr3L 705224 intergenic CR44514 + chr3L 705288 intergenic CR44514 + chr3L 705353 5` UTR CR44514 + chr3L_9_705001 chr3L_705001 RAL-405 1200 chr3L 705882 705889 chr3L 705998 706005 4 116 16.0 5.5 10.8 0.3 123 chr3L 705882 intergenic CG13895 -,CR44514 + chr3L 705944 intergenic CG13895 -,CR44514 + chr3L 706005 3` UTR CG13895 - chr3L_4_705001 chr3L_705001 RAL-405 1201 chr3L 705890 705917 chr3L 705996 706033 12 115 11.5 5.0 8.2 1.3 143 chr3L 705890 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706033 3` UTR CG13895 - chr3L_12_705001 chr3L_705001 RAL-405 1202 chr3L 789893 789931 chr3L 790398 790436 roo 16 498 10.5 1.5 6.0 2.3 543 chr3L 789893 intergenic not near genes chr3L 790164 intergenic not near genes chr3L 790436 intergenic not near genes chr3L_16_790001 chr3L_790001 RAL-405 1203 chr3L 854163 854202 chr3L 854260 854265 7 87 3.5 2.5 3.0 1.8 102 chr3L 854163 intron dpr20 - chr3L 854214 intron dpr20 - chr3L 854265 intron dpr20 - chr3L_7_850001 chr3L_850001 RAL-405 1204 chr3L 899994 900004 chr3L 900098 900108 6 102 0.5 9.5 5.0 1.0 114 chr3L 899994 intergenic not near genes chr3L 900051 intergenic not near genes chr3L 900108 intergenic not near genes chr3L_6_900001 chr3L_900001 RAL-405 1205 chr3L 900005 900019 chr3L 900092 900123 6 99 0.0 9.5 4.8 1.0 118 chr3L 900005 intergenic not near genes chr3L 900064 intergenic not near genes chr3L 900123 intergenic not near genes chr3L_6_900001 chr3L_900001 RAL-405 1206 chr3L 925185 925207 chr3L 932601 932613 mdg1 6 7432 3.0 4.5 3.8 1.2 7428 chr3L 925185 intron Glut1 + chr3L 928899 intron Glut1 + chr3L 932613 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-405 1207 chr3L 933904 933943 chr3L 934027 934066 16 120 2.5 6.5 4.5 2.9 162 chr3L 933904 intron Glut1 + chr3L 933985 intron Glut1 + chr3L 934066 intron Glut1 + chr3L_16_930001 chr3L_930001 RAL-405 1208 chr3L 939763 939798 chr3L 940894 940913 jockey 9 1136 4.5 5.0 4.8 1.6 1150 chr3L 939763 intron Glut1 + chr3L 940338 intron Glut1 + chr3L 940913 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-405 1209 chr3L 958328 958342 chr3L 958401 958440 6 96 6.0 4.5 5.2 1.0 112 chr3L 958328 intron Glut1 + chr3L 958384 intron Glut1 + chr3L 958440 intron Glut1 + chr3L_6_955001 chr3L_955001 RAL-405 1210 chr3L 960997 961042 chr3L 961110 961154 20 113 4.0 7.5 5.8 2.9 157 chr3L 960997 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961154 intron Glut1 + chr3L_20_960001 chr3L_960001 RAL-405 1211 chr3L 976505 976518 chr3L 976578 976614 6 88 4.0 3.5 3.8 1.2 109 chr3L 976505 intron Glut1 + chr3L 976560 intron Glut1 + chr3L 976614 intron Glut1 + chr3L_6_975001 chr3L_975001 RAL-405 1212 chr3L 1021374 1021403 chr3L 1021464 1021491 4 86 2.5 3.0 2.8 1.1 117 chr3L 1021374 intron trio - chr3L 1021432 intron trio - chr3L 1021491 intron trio - chr3L_4_1020001 chr3L_1020001 RAL-405 1213 chr3L 1033316 1033347 chr3L 1033443 1033463 4 120 0.5 0.0 0.2 3.3 147 chr3L 1033316 intron trio - chr3L 1033390 intron trio - chr3L 1033463 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-405 1214 chr3L 1040529 1040556 chr3L 1040633 1040660 11 102 8.5 3.0 5.8 1.6 131 chr3L 1040529 intron bab1 - chr3L 1040594 intron bab1 - chr3L 1040660 intron bab1 - chr3L_11_1040001 chr3L_1040001 RAL-405 1215 chr3L 1040558 1040581 chr3L 1040632 1040685 7 92 3.5 3.0 3.2 1.7 127 chr3L 1040558 intron bab1 - chr3L 1040622 intron bab1 - chr3L 1040685 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-405 1216 chr3L 1042941 1042961 chr3L 1043039 1043059 8 98 14.0 3.0 8.5 0.8 118 chr3L 1042941 intron bab1 - chr3L 1043000 intron bab1 - chr3L 1043059 intron bab1 - chr3L_8_1040001 chr3L_1040001 RAL-405 1217 chr3L 1154118 1154160 chr3L 1163288 1163298 roo 13 9163 2.0 2.5 2.2 4.1 9180 chr3L 1154118 intron bab2 - chr3L 1158708 intron bab2 - chr3L 1163298 intron bab2 - chr3L_13_1155001 chr3L_1155001 RAL-405 1218 chr3L 1219576 1219619 chr3L 1227329 1227331 412 5 7740 1.0 2.5 1.8 1.8 7755 chr3L 1219576 intron mwh + chr3L 1223454 intron mwh + chr3L 1227331 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-405 1219 chr3L 1258503 1258550 chr3L 1258891 1258911 17 388 5.5 5.0 5.2 2.7 408 chr3L 1258503 intron CG9134 + chr3L 1258707 intron CG9134 + chr3L 1258911 intron CG9134 + chr3L_17_1255001 chr3L_1255001 RAL-405 1220 chr3L 1310981 1311023 chr3L 1315846 1315872 6 4858 10.0 20.5 15.2 0.4 4891 chr3L 1310981 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-405 1221 chr3L 1364015 1364064 chr3L 1364121 1364165 8 101 0.0 5.0 2.5 2.3 150 chr3L 1364015 intron Ptp61F - chr3L 1364090 intron Ptp61F - chr3L 1364165 intron Ptp61F - chr3L_8_1360001 chr3L_1360001 RAL-405 1222 chr3L 1396736 1396752 chr3L 1396824 1396856 5 99 25.0 22.5 23.8 0.2 120 chr3L 1396736 intron Ptp61F - chr3L 1396796 intron Ptp61F - chr3L 1396856 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-405 1223 chr3L 1405642 1405651 chr3L 1405730 1405750 4 95 2.5 4.0 3.2 1.0 108 chr3L 1405642 intron Ptp61F - chr3L 1405696 intron Ptp61F - chr3L 1405750 intron Ptp61F - chr3L_4_1405001 chr3L_1405001 RAL-405 1224 chr3L 1463434 1463449 chr3L 1463514 1463535 6 83 1.5 5.0 3.2 1.4 101 chr3L 1463434 intron Ptp61F - chr3L 1463484 intron Ptp61F - chr3L 1463535 intron Ptp61F - chr3L_6_1460001 chr3L_1460001 RAL-405 1225 chr3L 1505986 1506030 chr3L 1513603 1513638 17.6 8 7612 4.5 5.0 4.8 1.4 7652 chr3L 1505986 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513638 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-405 1226 chr3L 1571462 1571494 chr3L 1571567 1571599 20 103 3.5 9.0 6.2 2.8 137 chr3L 1571462 intron CG12004 + chr3L 1571530 intron CG12004 + chr3L 1571599 intron CG12004 + chr3L_20_1570001 chr3L_1570001 RAL-405 1227 chr3L 1688240 1688271 chr3L 1688379 1688420 4 143 4.0 1.0 2.5 1.1 180 chr3L 1688240 intron CG7991 + chr3L 1688330 intron CG7991 + chr3L 1688420 intron CG7991 + chr3L_4_1685001 chr3L_1685001 RAL-405 1228 chr3L 1740848 1740863 chr3L 1741103 1741108 pogo 6 255 10.0 4.5 7.2 0.7 260 chr3L 1740848 intron Gk + chr3L 1740978 intron Gk + chr3L 1741108 intron Gk + chr3L_6_1740001 chr3L_1740001 RAL-405 1229 chr3L 1740868 1740879 chr3L 1741095 1741109 pogo 7 233 6.5 3.0 4.8 1.2 241 chr3L 1740868 intron Gk + chr3L 1740988 intron Gk + chr3L 1741109 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-405 1230 chr3L 1805681 1805712 chr3L 1805874 1805906 9 191 2.0 3.0 2.5 2.6 225 chr3L 1805681 exon CG42676 + chr3L 1805794 intron CG42676 + chr3L 1805906 intron CG42676 + chr3L_9_1805001 chr3L_1805001 RAL-405 1231 chr3L 1841555 1841562 chr3L 1841660 1841667 4 105 9.5 5.5 7.5 0.5 112 chr3L 1841555 intron Cpr62Bc - chr3L 1841611 intron Cpr62Bc - chr3L 1841667 intron Cpr62Bc - chr3L_4_1840001 chr3L_1840001 RAL-405 1232 chr3L 1853029 1853054 chr3L 1853133 1853158 5 102 3.0 4.0 3.5 1.1 129 chr3L 1853029 intron CG13936 - chr3L 1853094 intron CG13936 - chr3L 1853158 intron CG13936 - chr3L_5_1850001 chr3L_1850001 RAL-405 1233 chr3L 2108232 2108284 chr3L 2113456 2113498 copia 21 5221 3.0 9.0 6.0 3.0 5266 chr3L 2108232 intron sls - chr3L 2110865 intron sls - chr3L 2113498 intron sls - chr3L_21_2110001 chr3L_2110001 RAL-405 1234 chr3L 2139186 2139227 chr3L 2139287 2139328 10 99 4.0 2.0 3.0 2.5 142 chr3L 2139186 intron zormin - chr3L 2139257 intron zormin - chr3L 2139328 intron zormin - chr3L_10_2135001 chr3L_2135001 RAL-405 1235 chr3L 2168760 2168799 chr3L 2168866 2168910 18 107 6.5 5.5 6.0 2.6 150 chr3L 2168760 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168910 intron CG15879 - chr3L_18_2165001 chr3L_2165001 RAL-405 1236 chr3L 2199798 2199816 chr3L 2199894 2199911 9 94 0.0 6.0 3.0 2.2 113 chr3L 2199798 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199911 intergenic not near genes chr3L_9_2195001 chr3L_2195001 RAL-405 1237 chr3L 2307999 2308034 chr3L 2308113 2308143 7 116 4.0 4.5 4.2 1.3 144 chr3L 2307999 intergenic not near genes chr3L 2308071 intergenic not near genes chr3L 2308143 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-405 1238 chr3L 2331562 2331599 chr3L 2331659 2331691 9 94 6.5 3.5 5.0 1.5 129 chr3L 2331562 intron MsR1 + chr3L 2331626 intron MsR1 + chr3L 2331691 intron MsR1 + chr3L_9_2330001 chr3L_2330001 RAL-405 1239 chr3L 2355427 2355465 chr3L 2355634 2355673 4 204 0.5 0.5 0.5 2.7 246 chr3L 2355427 intergenic not near genes chr3L 2355550 intergenic not near genes chr3L 2355673 intergenic not near genes chr3L_4_2355001 chr3L_2355001 RAL-405 1240 chr3L 2447485 2447527 chr3L 2456660 2456699 roo 12 9171 7.0 2.5 4.8 2.1 9214 chr3L 2447485 intron CG45186 + chr3L 2452092 intron CG45186 + chr3L 2456699 intron CG45186 + chr3L_12_2450001 chr3L_2450001 RAL-405 1241 chr3L 2467431 2467486 chr3L 2467548 2467603 5 110 3.0 1.0 2.0 1.7 172 chr3L 2467431 intron CG45186 + chr3L 2467517 intron CG45186 + chr3L 2467603 intron CG45186 + chr3L_5_2465001 chr3L_2465001 RAL-405 1242 chr3L 2519683 2519710 chr3L 2519795 2519802 9 109 5.5 0.0 2.8 2.4 119 chr3L 2519683 intron Spn - chr3L 2519742 intron Spn - chr3L 2519802 intron Spn - chr3L_9_2515001 chr3L_2515001 RAL-405 1243 chr3L 2534611 2534644 chr3L 2534704 2534721 6 96 0.0 3.5 1.8 2.1 110 chr3L 2534611 intron Spn - chr3L 2534666 intron Spn - chr3L 2534721 exon Spn - chr3L_6_2530001 chr3L_2530001 RAL-405 1244 chr3L 2581880 2581913 chr3L 2581994 2582025 11 112 1.5 3.0 2.2 3.4 145 chr3L 2581880 intron msn - chr3L 2581952 intron msn - chr3L 2582025 intron msn - chr3L_11_2580001 chr3L_2580001 RAL-405 1245 chr3L 2667871 2667926 chr3L 2667967 2668017 6 87 6.0 5.0 5.5 0.9 146 chr3L 2667871 intron Fife - chr3L 2667944 intron Fife - chr3L 2668017 intron Fife - chr3L_6_2665001 chr3L_2665001 RAL-405 1246 chr3L 2719516 2719556 chr3L 2719638 2719673 9 119 6.0 4.0 5.0 1.5 157 chr3L 2719516 3` UTR Mrtf - chr3L 2719594 3` UTR Mrtf - chr3L 2719673 3` UTR Mrtf - chr3L_9_2715001 chr3L_2715001 RAL-405 1247 chr3L 2751440 2751456 chr3L 2755755 2755771 F-element 9 4315 11.5 10.5 11.0 0.8 4331 chr3L 2751440 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755771 intron Mrtf - chr3L_9_2750001 chr3L_2750001 RAL-405 1248 chr3L 2766735 2766762 chr3L 2766829 2766868 12 113 6.0 6.0 6.0 1.7 133 chr3L 2766735 intergenic Mrtf -,Non2 + chr3L 2766802 intergenic Non2 +,Mrtf - chr3L 2766868 intergenic Non2 +,Mrtf - chr3L_12_2765001 chr3L_2765001 RAL-405 1249 chr3L 2927847 2927869 chr3L 2936119 2936166 Tirant 5 8290 2.5 5.5 4.0 1.0 8319 chr3L 2927847 intron Shab + chr3L 2932006 intron Shab + chr3L 2936166 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-405 1250 chr3L 2966168 2966213 chr3L 2966283 2966288 13 105 9.0 4.5 6.8 1.7 120 chr3L 2966168 intergenic not near genes chr3L 2966228 intergenic not near genes chr3L 2966288 intergenic not near genes chr3L_13_2965001 chr3L_2965001 RAL-405 1251 chr3L 2966708 2966730 chr3L 2974152 2974169 mdg1 7 7442 8.0 4.5 6.2 1.0 7461 chr3L 2966708 intergenic not near genes chr3L 2970438 intergenic not near genes chr3L 2974169 intergenic not near genes chr3L_7_2970001 chr3L_2970001 RAL-405 1252 chr3L 2985273 2985287 chr3L 2985371 2985386 4 99 5.0 4.0 4.5 0.7 113 chr3L 2985273 intergenic not near genes chr3L 2985330 intergenic not near genes chr3L 2985386 intergenic not near genes chr3L_4_2985001 chr3L_2985001 RAL-405 1253 chr3L 2985288 2985314 chr3L 2985369 2985388 13 91 2.5 4.0 3.2 3.1 100 chr3L 2985288 intergenic not near genes chr3L 2985338 intergenic not near genes chr3L 2985388 intergenic not near genes chr3L_13_2985001 chr3L_2985001 RAL-405 1254 chr3L 3051726 3051746 chr3L 3051988 3052008 pogo 12 262 11.5 1.0 6.2 1.7 282 chr3L 3051726 3` UTR CG32485 + chr3L 3051867 intergenic CG32485 + chr3L 3052008 intergenic CG32485 + chr3L_12_3050001 chr3L_3050001 RAL-405 1255 chr3L 3252320 3252375 chr3L 3252416 3252466 12 95 2.0 1.0 1.5 4.8 146 chr3L 3252320 5` UTR CR43626 + chr3L 3252393 5` UTR CR43626 + chr3L 3252466 5` UTR CR43626 + chr3L_12_3250001 chr3L_3250001 RAL-405 1256 chr3L 3281462 3281469 chr3L 3281933 3281980 Doc 5 495 4.0 3.5 3.8 1.0 518 chr3L 3281462 intron CG12017 + chr3L 3281721 intron CG12017 + chr3L 3281980 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-405 1257 chr3L 3285629 3285667 chr3L 3285727 3285770 16 97 4.5 4.0 4.2 3.1 141 chr3L 3285629 intron CG12017 + chr3L 3285700 intron CG12017 + chr3L 3285770 intron CG12017 + chr3L_16_3285001 chr3L_3285001 RAL-405 1258 chr3L 3317513 3317565 chr3L 3317612 3317649 7 93 2.0 4.5 3.2 1.7 136 chr3L 3317513 intergenic Drsl5 + chr3L 3317581 intergenic Drsl5 +,PIG-C - chr3L 3317649 intergenic PIG-C - chr3L_7_3315001 chr3L_3315001 RAL-405 1259 chr3L 3341245 3341298 chr3L 3341345 3341373 18 96 3.5 4.5 4.0 3.6 128 chr3L 3341245 intron kst + chr3L 3341309 intron kst + chr3L 3341373 intron kst + chr3L_18_3340001 chr3L_3340001 RAL-405 1260 chr3L 3435776 3435799 chr3L 3436136 3436171 8 377 5.0 4.0 4.5 1.5 395 chr3L 3435776 intron eIF5B - chr3L 3435974 intron eIF5B - chr3L 3436171 intron eIF5B - chr3L_8_3435001 chr3L_3435001 RAL-405 1261 chr3L 3470137 3470145 chr3L 3470233 3470241 6 96 1.0 5.5 3.2 1.4 104 chr3L 3470137 intron CG14971 - chr3L 3470189 intron CG14971 - chr3L 3470241 intron CG14971 - chr3L_6_3470001 chr3L_3470001 RAL-405 1262 chr3L 3470147 3470182 chr3L 3470232 3470278 10 89 1.0 5.0 3.0 2.5 131 chr3L 3470147 intron CG14971 - chr3L 3470212 intron CG14971 - chr3L 3470278 intron CG14971 - chr3L_10_3470001 chr3L_3470001 RAL-405 1263 chr3L 3494177 3494205 chr3L 3494274 3494297 11 95 4.0 1.0 2.5 3.1 120 chr3L 3494177 intron CG42324 + chr3L 3494237 intron CG42324 + chr3L 3494297 intron CG42324 + chr3L_11_3490001 chr3L_3490001 RAL-405 1264 chr3L 3577718 3577753 chr3L 3577816 3577844 9 96 6.5 5.0 5.8 1.3 126 chr3L 3577718 intron Eip63E + chr3L 3577781 intron Eip63E + chr3L 3577844 intron Eip63E + chr3L_9_3575001 chr3L_3575001 RAL-405 1265 chr3L 3584574 3584623 chr3L 3584679 3584728 13 100 1.5 5.0 3.2 3.1 154 chr3L 3584574 intron Eip63E + chr3L 3584651 intron Eip63E + chr3L 3584728 intron Eip63E + chr3L_13_3580001 chr3L_3580001 RAL-405 1266 chr3L 3601293 3601308 chr3L 3606613 3606639 copia 5 5329 8.0 5.0 6.5 0.7 5346 chr3L 3601293 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-405 1267 chr3L 3601312 3601331 chr3L 3606610 3606656 copia 6 5320 4.5 5.0 4.8 1.0 5344 chr3L 3601312 intron Eip63E + chr3L 3603984 intron Eip63E + chr3L 3606656 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-405 1268 chr3L 3619393 3619430 chr3L 3619496 3619544 6 107 4.0 5.0 4.5 1.1 151 chr3L 3619393 intergenic not near genes chr3L 3619468 intergenic not near genes chr3L 3619544 intergenic not near genes chr3L_6_3615001 chr3L_3615001 RAL-405 1269 chr3L 3657000 3657020 chr3L 3657083 3657118 5 94 1.5 1.5 1.5 2.0 118 chr3L 3657000 intergenic not near genes chr3L 3657059 intergenic not near genes chr3L 3657118 intergenic not near genes chr3L_5_3655001 chr3L_3655001 RAL-405 1270 chr3L 3665571 3665605 chr3L 3665658 3665687 5 81 2.5 4.0 3.2 1.2 116 chr3L 3665571 intergenic not near genes chr3L 3665629 intergenic not near genes chr3L 3665687 intergenic not near genes chr3L_5_3665001 chr3L_3665001 RAL-405 1271 chr3L 3709438 3709458 chr3L 3709530 3709560 4 99 2.0 0.5 1.2 1.8 122 chr3L 3709438 intergenic CR45675 + chr3L 3709499 intergenic not near genes chr3L 3709560 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-405 1272 chr3L 3763739 3763770 chr3L 3763840 3763847 6 92 4.0 0.0 2.0 2.0 108 chr3L 3763739 intron CG32264 - chr3L 3763793 intron CG32264 - chr3L 3763847 intron CG32264 - chr3L_6_3760001 chr3L_3760001 RAL-405 1273 chr3L 3766722 3766738 chr3L 3766828 3766843 4 103 4.5 1.5 3.0 1.0 121 chr3L 3766722 intron CG32264 - chr3L 3766782 intron CG32264 - chr3L 3766843 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-405 1274 chr3L 3766740 3766753 chr3L 3766825 3766849 5 95 1.5 1.0 1.2 2.3 109 chr3L 3766740 intron CG32264 - chr3L 3766794 intron CG32264 - chr3L 3766849 intron CG32264 - chr3L_5_3765001 chr3L_3765001 RAL-405 1275 chr3L 3774261 3774294 chr3L 3774354 3774394 14 94 4.0 5.0 4.5 2.5 133 chr3L 3774261 intron CG32264 - chr3L 3774328 intron CG32264 - chr3L 3774394 intron CG32264 - chr3L_14_3770001 chr3L_3770001 RAL-405 1276 chr3L 3783253 3783290 chr3L 3783350 3783387 9 95 2.5 3.0 2.8 2.4 134 chr3L 3783253 intron CG32264 - chr3L 3783320 intron CG32264 - chr3L 3783387 intron CG32264 - chr3L_9_3780001 chr3L_3780001 RAL-405 1277 chr3L 3797250 3797264 chr3L 3797323 3797356 6 87 2.5 3.0 2.8 1.6 106 chr3L 3797250 intron CG32264 - chr3L 3797303 intron CG32264 - chr3L 3797356 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-405 1278 chr3L 3815049 3815083 chr3L 3815134 3815164 12 93 2.5 4.0 3.2 2.9 115 chr3L 3815049 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815164 intron,intron Scsalpha +,CR43932 - chr3L_12_3815001 chr3L_3815001 RAL-405 1279 chr3L 3833723 3833754 chr3L 3833984 3834015 pogo 5 261 3.5 0.5 2.0 1.7 292 chr3L 3833723 intron enc + chr3L 3833869 intron enc + chr3L 3834015 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-405 1280 chr3L 3877443 3877466 chr3L 3877586 3877609 8 136 0.0 3.0 1.5 3.2 166 chr3L 3877443 intergenic not near genes chr3L 3877526 intergenic not near genes chr3L 3877609 intergenic not near genes chr3L_8_3875001 chr3L_3875001 RAL-405 1281 chr3L 3890941 3890988 chr3L 3891042 3891068 10 95 3.5 1.0 2.2 3.1 127 chr3L 3890941 intergenic not near genes chr3L 3891004 intergenic not near genes chr3L 3891068 intergenic not near genes chr3L_10_3890001 chr3L_3890001 RAL-405 1282 chr3L 3921382 3921417 chr3L 3921655 3921680 15 277 2.5 2.5 2.5 4.3 298 chr3L 3921382 intron Eip63F-1 - chr3L 3921531 intron Eip63F-1 - chr3L 3921680 intron Eip63F-1 - chr3L_15_3920001 chr3L_3920001 RAL-405 1283 chr3L 3935811 3935848 chr3L 3935909 3935946 13 95 1.0 9.5 5.2 2.1 135 chr3L 3935811 5` UTR Eip63F-2 + chr3L 3935878 5` UTR Eip63F-2 + chr3L 3935946 5` UTR Eip63F-2 + chr3L_13_3935001 chr3L_3935001 RAL-405 1284 chr3L 4038019 4038058 chr3L 4038116 4038135 6 91 5.5 4.5 5.0 1.0 116 chr3L 4038019 3` UTR CG11593 - chr3L 4038077 3` UTR CG11593 - chr3L 4038135 3` UTR CG11593 - chr3L_6_4035001 chr3L_4035001 RAL-405 1285 chr3L 4038059 4038068 chr3L 4038113 4038165 7 81 5.5 4.5 5.0 1.2 106 chr3L 4038059 3` UTR CG11593 - chr3L 4038112 3` UTR CG11593 - chr3L 4038165 3` UTR CG11593 - chr3L_7_4035001 chr3L_4035001 RAL-405 1286 chr3L 4061892 4061938 chr3L 4061988 4062026 14 93 4.0 1.5 2.8 3.7 134 chr3L 4061892 3` UTR CG18869 + chr3L 4061959 intergenic CG18869 +,dib + chr3L 4062026 intergenic CG18869 +,dib + chr3L_14_4060001 chr3L_4060001 RAL-405 1287 chr3L 4328732 4328765 chr3L 4336250 4336282 412 7 7513 0.0 6.0 3.0 1.8 7550 chr3L 4328732 intron Cip4 - chr3L 4332507 intron Cip4 - chr3L 4336282 exon Cip4 - chr3L_7_4330001 chr3L_4330001 RAL-405 1288 chr3L 4344870 4344896 chr3L 4344997 4345003 5 121 7.5 0.0 3.8 1.0 133 chr3L 4344870 intron Cip4 - chr3L 4344936 intron Cip4 - chr3L 4345003 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-405 1289 chr3L 4364177 4364234 chr3L 4364286 4364343 7 106 1.5 3.5 2.5 2.0 166 chr3L 4364177 intergenic Cip4 -,mRpS6 + chr3L 4364260 intergenic Cip4 -,mRpS6 + chr3L 4364343 intergenic mRpS6 +,Cip4 - chr3L_7_4360001 chr3L_4360001 RAL-405 1290 chr3L 4384875 4384891 chr3L 4384988 4385004 7 112 11.5 6.0 8.8 0.7 129 chr3L 4384875 5` UTR slow + chr3L 4384940 intron slow + chr3L 4385004 intron slow + chr3L_7_4380001 chr3L_4380001 RAL-405 1291 chr3L 4384894 4384925 chr3L 4384985 4385028 7 107 7.0 6.0 6.5 0.9 134 chr3L 4384894 intron slow + chr3L 4384961 intron slow + chr3L 4385028 intron slow + chr3L_7_4380001 chr3L_4380001 RAL-405 1292 chr3L 4631621 4631668 chr3L 4631717 4631762 13 93 1.0 4.5 2.8 3.4 141 chr3L 4631621 intron axo - chr3L 4631692 intron axo - chr3L 4631762 intron axo - chr3L_13_4630001 chr3L_4630001 RAL-405 1293 chr3L 4638767 4638783 chr3L 4638882 4638906 8 117 1.5 2.5 2.0 2.7 139 chr3L 4638767 intron axo - chr3L 4638836 intron axo - chr3L 4638906 intron axo - chr3L_8_4635001 chr3L_4635001 RAL-405 1294 chr3L 4652946 4652966 chr3L 4653077 4653097 4 129 2.5 9.0 5.8 0.6 151 chr3L 4652946 intron axo - chr3L 4653022 intron axo - chr3L 4653097 intron axo - chr3L_4_4650001 chr3L_4650001 RAL-405 1295 chr3L 4676037 4676053 chr3L 4676133 4676148 8 96 4.0 5.0 4.5 1.5 111 chr3L 4676037 intron axo - chr3L 4676092 intron axo - chr3L 4676148 intron axo - chr3L_8_4675001 chr3L_4675001 RAL-405 1296 chr3L 4726419 4726462 chr3L 4726510 4726532 15 95 5.0 7.5 6.2 2.1 113 chr3L 4726419 intron RhoGEF64C + chr3L 4726476 intron RhoGEF64C + chr3L 4726532 intron RhoGEF64C + chr3L_15_4725001 chr3L_4725001 RAL-405 1297 chr3L 4784938 4784991 chr3L 4785167 4785210 11 223 0.5 1.5 1.0 5.5 272 chr3L 4784938 intron RhoGEF64C + chr3L 4785074 intron RhoGEF64C + chr3L 4785210 intron RhoGEF64C + chr3L_11_4785001 chr3L_4785001 RAL-405 1298 chr3L 4837871 4837921 chr3L 4837970 4838020 18 96 7.5 6.0 6.8 2.3 149 chr3L 4837871 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838020 3` UTR CG13707 - chr3L_18_4835001 chr3L_4835001 RAL-405 1299 chr3L 4844125 4844139 chr3L 4844223 4844242 6 99 7.0 4.0 5.5 0.9 117 chr3L 4844125 intergenic not near genes chr3L 4844184 intergenic not near genes chr3L 4844242 intergenic not near genes chr3L_6_4840001 chr3L_4840001 RAL-405 1300 chr3L 4858294 4858334 chr3L 4858394 4858443 4 99 3.0 2.5 2.8 1.1 149 chr3L 4858294 intergenic not near genes chr3L 4858368 intergenic not near genes chr3L 4858443 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-405 1301 chr3L 4989173 4989192 chr3L 4989278 4989292 7 105 0.0 1.0 0.5 4.7 119 chr3L 4989173 intron Con - chr3L 4989232 intron Con - chr3L 4989292 intron Con - chr3L_7_4985001 chr3L_4985001 RAL-405 1302 chr3L 5030760 5030799 chr3L 5030856 5030890 7 93 3.0 2.0 2.5 2.0 130 chr3L 5030760 intron Con - chr3L 5030825 intron Con - chr3L 5030890 intron Con - chr3L_7_5030001 chr3L_5030001 RAL-405 1303 chr3L 5034139 5034148 chr3L 5043311 5043320 roo 4 9172 9.5 6.5 8.0 0.4 9181 chr3L 5034139 intron Con - chr3L 5038730 intron Con - chr3L 5043320 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-405 1304 chr3L 5034155 5034192 chr3L 5043309 5043364 roo 10 9156 3.0 6.0 4.5 1.8 9209 chr3L 5034155 intron Con - chr3L 5038760 intron Con - chr3L 5043364 intron Con - chr3L_10_5035001 chr3L_5035001 RAL-405 1305 chr3L 5045439 5045473 chr3L 5050240 5050264 Doc 14 4791 6.0 8.5 7.2 1.7 4825 chr3L 5045439 intron Con - chr3L 5047852 intron Con - chr3L 5050264 intron Con - chr3L_14_5045001 chr3L_5045001 RAL-405 1306 chr3L 5103591 5103631 chr3L 5103691 5103698 6 93 7.5 0.0 3.8 1.2 107 chr3L 5103591 intergenic not near genes chr3L 5103644 intergenic not near genes chr3L 5103698 intergenic not near genes chr3L_6_5100001 chr3L_5100001 RAL-405 1307 chr3L 5104468 5104489 chr3L 5124622 5124638 7 20152 11.5 3.0 7.2 0.9 20170 chr3L 5104468 intergenic not near genes chr3L 5114553 intergenic not near genes chr3L 5124638 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-405 1308 chr3L 5104490 5104512 chr3L 5124619 5124666 6 20149 4.0 2.5 3.2 1.4 20176 chr3L 5104490 intergenic not near genes chr3L 5114578 intergenic not near genes chr3L 5124666 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-405 1309 chr3L 5164618 5164633 chr3L 5164714 5164729 9 96 17.5 6.0 11.8 0.7 111 chr3L 5164618 intron shep - chr3L 5164674 intron shep - chr3L 5164729 intron shep - chr3L_9_5160001 chr3L_5160001 RAL-405 1310 chr3L 5164640 5164667 chr3L 5164711 5164763 15 90 10.0 5.5 7.8 1.7 123 chr3L 5164640 intron shep - chr3L 5164702 intron shep - chr3L 5164763 intron shep - chr3L_15_5160001 chr3L_5160001 RAL-405 1311 chr3L 5203083 5203116 chr3L 5203208 5203241 16 122 4.0 4.5 4.2 3.1 158 chr3L 5203083 intron shep - chr3L 5203162 intron shep - chr3L 5203241 intron shep - chr3L_16_5200001 chr3L_5200001 RAL-405 1312 chr3L 5212255 5212269 chr3L 5212326 5212331 4 76 3.0 2.5 2.8 1.1 76 chr3L 5212255 intron shep - chr3L 5212293 intron shep - chr3L 5212331 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-405 1313 chr3L 5251849 5251868 chr3L 5251943 5251967 5 98 0.5 10.5 5.5 0.8 118 chr3L 5251849 intron shep - chr3L 5251908 intron shep - chr3L 5251967 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-405 1314 chr3L 5257614 5257663 chr3L 5257922 5257971 13 305 1.0 9.0 5.0 2.2 357 chr3L 5257614 intron shep - chr3L 5257792 intron shep - chr3L 5257971 intron shep - chr3L_13_5255001 chr3L_5255001 RAL-405 1315 chr3L 5261150 5261177 chr3L 5261249 5261276 6 99 4.0 5.5 4.8 1.0 126 chr3L 5261150 intron shep - chr3L 5261213 intron shep - chr3L 5261276 intron shep - chr3L_6_5260001 chr3L_5260001 RAL-405 1316 chr3L 5299163 5299169 chr3L 5306599 5306615 Quasimodo 4 7442 2.5 0.0 1.2 1.8 7452 chr3L 5299163 intergenic not near genes chr3L 5302889 intergenic not near genes chr3L 5306615 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-405 1317 chr3L 5330515 5330551 chr3L 5330624 5330629 5 100 5.5 7.0 6.2 0.7 114 chr3L 5330515 intergenic not near genes chr3L 5330572 intergenic not near genes chr3L 5330629 intergenic not near genes chr3L_5_5330001 chr3L_5330001 RAL-405 1318 chr3L 5339605 5339649 chr3L 5340349 5340393 7 738 3.0 4.0 3.5 1.6 788 chr3L 5339605 intergenic not near genes chr3L 5339999 intergenic not near genes chr3L 5340393 intergenic not near genes chr3L_7_5335001 chr3L_5335001 RAL-405 1319 chr3L 5396472 5396498 chr3L 5396564 5396605 6 103 0.0 0.5 0.2 5.0 133 chr3L 5396472 intergenic not near genes chr3L 5396538 intergenic not near genes chr3L 5396605 intergenic not near genes chr3L_6_5395001 chr3L_5395001 RAL-405 1320 chr3L 5449515 5449557 chr3L 5449614 5449645 12 97 7.0 6.0 6.5 1.6 130 chr3L 5449515 intergenic not near genes chr3L 5449580 intergenic not near genes chr3L 5449645 intergenic not near genes chr3L_12_5445001 chr3L_5445001 RAL-405 1321 chr3L 5555460 5555511 chr3L 5555569 5555620 13 108 3.0 6.0 4.5 2.4 160 chr3L 5555460 intergenic not near genes chr3L 5555540 intergenic not near genes chr3L 5555620 intergenic not near genes chr3L_13_5555001 chr3L_5555001 RAL-405 1322 chr3L 5908057 5908102 chr3L 5908157 5908202 18 97 1.0 3.0 2.0 6.0 145 chr3L 5908057 intron CG13288 + chr3L 5908130 intron CG13288 + chr3L 5908202 intron CG13288 + chr3L_18_5905001 chr3L_5905001 RAL-405 1323 chr3L 5910022 5910056 chr3L 5910273 5910293 pogo 8 251 8.5 7.5 8.0 0.9 271 chr3L 5910022 intron CG13288 + chr3L 5910158 intron CG13288 + chr3L 5910293 intron CG13288 + chr3L_8_5910001 chr3L_5910001 RAL-405 1324 chr3L 5926314 5926348 chr3L 5926509 5926517 BS 6 191 2.0 3.5 2.8 1.6 203 chr3L 5926314 intron Vap-33B + chr3L 5926416 intron Vap-33B + chr3L 5926517 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-405 1325 chr3L 6001672 6001705 chr3L 6004392 6004425 jockey 10 2718 6.0 1.0 3.5 2.2 2753 chr3L 6001672 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004425 intron PVRAP + chr3L_10_6000001 chr3L_6000001 RAL-405 1326 chr3L 6023510 6023549 chr3L 6023660 6023699 5 144 5.0 6.5 5.8 0.7 189 chr3L 6023510 intron PVRAP + chr3L 6023604 intron PVRAP + chr3L 6023699 intron PVRAP + chr3L_5_6020001 chr3L_6020001 RAL-405 1327 chr3L 6040351 6040391 chr3L 6042725 6042767 Doc 9 2369 4.5 6.0 5.2 1.5 2416 chr3L 6040351 intergenic Jon65Aiv + chr3L 6041559 intergenic not near genes chr3L 6042767 intergenic not near genes chr3L_9_6040001 chr3L_6040001 RAL-405 1328 chr3L 6052526 6052660 chr3L 6052636 6052739 4 103 1.5 1.5 1.5 1.6 213 chr3L 6052526 exon Jon65Aii + chr3L 6052632 exon Jon65Aii + chr3L 6052739 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-405 1329 chr3L 6116675 6116727 chr3L 6116779 6116830 21 101 3.5 3.5 3.5 4.7 155 chr3L 6116675 intron Ets65A + chr3L 6116752 intron Ets65A + chr3L 6116830 intron Ets65A + chr3L_21_6115001 chr3L_6115001 RAL-405 1330 chr3L 6169116 6169134 chr3L 6169210 6169233 7 97 6.5 10.0 8.2 0.8 117 chr3L 6169116 3` UTR CG10289 - chr3L 6169174 3` UTR CG10289 - chr3L 6169233 3` UTR CG10289 - chr3L_7_6165001 chr3L_6165001 RAL-405 1331 chr3L 6220897 6220946 chr3L 6230069 6230113 roo 15 9164 3.0 6.0 4.5 2.7 9216 chr3L 6220897 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230113 intergenic not near genes chr3L_15_6225001 chr3L_6225001 RAL-405 1332 chr3L 6255524 6255552 chr3L 6255622 6255663 11 108 3.0 6.0 4.5 2.0 139 chr3L 6255524 intron Best2 - chr3L 6255594 intron Best2 - chr3L 6255663 intron Best2 - chr3L_11_6255001 chr3L_6255001 RAL-405 1333 chr3L 6293747 6293763 chr3L 6293849 6293865 5 102 8.5 4.5 6.5 0.7 118 chr3L 6293747 intergenic not near genes chr3L 6293806 intergenic not near genes chr3L 6293865 intergenic not near genes chr3L_5_6290001 chr3L_6290001 RAL-405 1334 chr3L 6293766 6293794 chr3L 6293847 6293891 11 96 6.5 4.5 5.5 1.7 125 chr3L 6293766 intergenic not near genes chr3L 6293828 intergenic not near genes chr3L 6293891 intergenic not near genes chr3L_11_6290001 chr3L_6290001 RAL-405 1335 chr3L 6332246 6332269 chr3L 6332342 6332376 4 96 0.5 0.0 0.2 3.3 130 chr3L 6332246 intron CG13300 - chr3L 6332311 intron CG13300 - chr3L 6332376 intron CG13300 - chr3L_4_6330001 chr3L_6330001 RAL-405 1336 chr3L 6334998 6335041 chr3L 6335479 6335532 297 8 478 1.5 6.0 3.8 1.7 534 chr3L 6334998 intron CG13300 - chr3L 6335265 intron CG13300 - chr3L 6335532 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-405 1337 chr3L 6362366 6362411 chr3L 6362463 6362508 10 96 6.0 4.5 5.2 1.6 142 chr3L 6362366 intergenic not near genes chr3L 6362437 intergenic not near genes chr3L 6362508 intergenic not near genes chr3L_10_6360001 chr3L_6360001 RAL-405 1338 chr3L 6405640 6405683 chr3L 6432124 6432167 roo 24 26483 9.0 5.0 7.0 3.0 26527 chr3L 6405640 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432167 intron CG42747 + chr3L_24_6415001 chr3L_6415001 RAL-405 1339 chr3L 6562840 6562854 chr3L 6562934 6562953 7 97 9.5 14.0 11.8 0.5 113 chr3L 6562840 intron CG18769 + chr3L 6562896 intron CG18769 + chr3L 6562953 intron CG18769 + chr3L_7_6560001 chr3L_6560001 RAL-405 1340 chr3L 6562858 6562868 chr3L 6562933 6562968 8 90 5.5 14.0 9.8 0.7 110 chr3L 6562858 intron CG18769 + chr3L 6562913 intron CG18769 + chr3L 6562968 intron CG18769 + chr3L_8_6560001 chr3L_6560001 RAL-405 1341 chr3L 6621722 6621738 chr3L 6621925 6621941 4 202 6.0 3.0 4.5 0.7 219 chr3L 6621722 intergenic not near genes chr3L 6621832 intergenic not near genes chr3L 6621941 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-405 1342 chr3L 6632400 6632444 chr3L 6632502 6632551 15 104 4.5 1.5 3.0 3.8 151 chr3L 6632400 intron GluRIA + chr3L 6632476 intron GluRIA + chr3L 6632551 intron GluRIA + chr3L_15_6630001 chr3L_6630001 RAL-405 1343 chr3L 6668944 6668993 chr3L 6669045 6669094 12 95 3.0 0.0 1.5 4.8 150 chr3L 6668944 intergenic not near genes chr3L 6669019 intergenic not near genes chr3L 6669094 intergenic not near genes chr3L_12_6665001 chr3L_6665001 RAL-405 1344 chr3L 6781103 6781153 chr3L 6783136 6783178 Doc 6 2030 4.5 0.0 2.2 1.9 2075 chr3L 6781103 intergenic not near genes chr3L 6782140 intergenic not near genes chr3L 6783178 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-405 1345 chr3L 6887503 6887521 chr3L 6895009 6895033 roo 6 7511 8.0 6.5 7.2 0.7 7530 chr3L 6887503 intergenic not near genes chr3L 6891268 intergenic not near genes chr3L 6895033 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-405 1346 chr3L 6907995 6908047 chr3L 6908098 6908143 12 93 4.0 0.0 2.0 4.0 148 chr3L 6907995 intergenic not near genes chr3L 6908069 intergenic not near genes chr3L 6908143 intergenic not near genes chr3L_12_6905001 chr3L_6905001 RAL-405 1347 chr3L 6994875 6994914 chr3L 6995506 6995545 BS 12 631 1.0 5.5 3.2 2.9 670 chr3L 6994875 intergenic bin + chr3L 6995210 intergenic not near genes chr3L 6995545 intergenic not near genes chr3L_12_6995001 chr3L_6995001 RAL-405 1348 chr3L 7013437 7013467 chr3L 7013545 7013590 4 110 5.0 0.0 2.5 1.1 153 chr3L 7013437 intron Mp + chr3L 7013514 intron Mp + chr3L 7013590 intron Mp + chr3L_4_7010001 chr3L_7010001 RAL-405 1349 chr3L 7052796 7052836 chr3L 7052901 7052936 14 102 4.5 2.5 3.5 3.1 140 chr3L 7052796 3` UTR Mp + chr3L 7052866 3` UTR Mp + chr3L 7052936 3` UTR Mp + chr3L_14_7050001 chr3L_7050001 RAL-405 1350 chr3L 7066106 7066143 chr3L 7066220 7066250 6 106 7.0 1.5 4.2 1.2 144 chr3L 7066106 intron CG8641 - chr3L 7066178 intron CG8641 - chr3L 7066250 intron CG8641 - chr3L_6_7065001 chr3L_7065001 RAL-405 1351 chr3L 7258915 7258933 chr3L 7259075 7259078 7 157 1.0 6.5 3.8 1.5 163 chr3L 7258915 intron CG14830 - chr3L 7258996 intron CG14830 - chr3L 7259078 intron CG14830 - chr3L_7_7255001 chr3L_7255001 RAL-405 1352 chr3L 7276199 7276241 chr3L 7276293 7276313 10 97 3.5 4.5 4.0 2.0 114 chr3L 7276199 intron unc-13-4A - chr3L 7276256 intron unc-13-4A - chr3L 7276313 intron unc-13-4A - chr3L_10_7275001 chr3L_7275001 RAL-405 1353 chr3L 7285428 7285472 chr3L 7285526 7285570 7 97 3.5 3.0 3.2 1.7 142 chr3L 7285428 intron unc-13-4A - chr3L 7285499 intron unc-13-4A - chr3L 7285570 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-405 1354 chr3L 7377296 7377348 chr3L 7380421 7380437 297 17 3117 3.5 2.5 3.0 4.2 3141 chr3L 7377296 intron SMSr - chr3L 7378866 intron SMSr - chr3L 7380437 intron SMSr - chr3L_17_7375001 chr3L_7375001 RAL-405 1355 chr3L 7418193 7418195 chr3L 7418296 7418298 4 103 3.0 6.5 4.8 0.7 105 chr3L 7418193 intergenic not near genes chr3L 7418246 intergenic not near genes chr3L 7418298 intergenic not near genes chr3L_4_7415001 chr3L_7415001 RAL-405 1356 chr3L 7418201 7418222 chr3L 7418294 7418325 4 100 3.0 6.5 4.8 0.7 124 chr3L 7418201 intergenic not near genes chr3L 7418263 intergenic not near genes chr3L 7418325 intergenic not near genes chr3L_4_7415001 chr3L_7415001 RAL-405 1357 chr3L 7418225 7418241 chr3L 7418293 7418344 7 91 2.5 5.5 4.0 1.4 119 chr3L 7418225 intergenic not near genes chr3L 7418284 intergenic not near genes chr3L 7418344 intergenic not near genes chr3L_7_7415001 chr3L_7415001 RAL-405 1358 chr3L 7460363 7460400 chr3L 7460456 7460504 8 101 3.5 7.0 5.2 1.3 141 chr3L 7460363 intergenic not near genes chr3L 7460434 intergenic not near genes chr3L 7460504 intergenic not near genes chr3L_8_7460001 chr3L_7460001 RAL-405 1359 chr3L 7462971 7462990 chr3L 7463038 7463084 10 88 5.0 1.5 3.2 2.4 113 chr3L 7462971 intergenic not near genes chr3L 7463028 intergenic not near genes chr3L 7463084 intergenic not near genes chr3L_10_7460001 chr3L_7460001 RAL-405 1360 chr3L 7498755 7498785 chr3L 7503542 7503557 F-element 10 4789 11.5 12.0 11.8 0.8 4802 chr3L 7498755 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503557 intergenic not near genes chr3L_10_7500001 chr3L_7500001 RAL-405 1361 chr3L 7508678 7508703 chr3L 7508767 7508787 11 96 5.5 4.0 4.8 1.9 109 chr3L 7508678 intergenic not near genes chr3L 7508732 intergenic not near genes chr3L 7508787 intergenic not near genes chr3L_11_7505001 chr3L_7505001 RAL-405 1362 chr3L 7576190 7576244 chr3L 7576298 7576347 12 102 3.0 1.5 2.2 3.8 157 chr3L 7576190 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576347 intergenic not near genes chr3L_12_7575001 chr3L_7575001 RAL-405 1363 chr3L 7793696 7793741 chr3L 7800768 7800793 297 17 7067 6.0 5.5 5.8 2.5 7097 chr3L 7793696 intron CG32369 - chr3L 7797244 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_17_7795001 chr3L_7795001 RAL-405 1364 chr3L 7876086 7876130 chr3L 7876180 7876217 12 96 0.5 0.5 0.5 8.0 131 chr3L 7876086 intron CG32365 + chr3L 7876152 intron CG32365 + chr3L 7876217 intron CG32365 + chr3L_12_7875001 chr3L_7875001 RAL-405 1365 chr3L 7884445 7884470 chr3L 7884539 7884565 10 95 0.0 5.5 2.8 2.6 120 chr3L 7884445 intron CG32365 + chr3L 7884505 intron CG32365 + chr3L 7884565 intron CG32365 + chr3L_10_7880001 chr3L_7880001 RAL-405 1366 chr3L 7886520 7886546 chr3L 7889053 7889079 Stalker4 6 2531 0.5 6.0 3.2 1.4 2559 chr3L 7886520 intron CG32365 + chr3L 7887800 intron CG32365 + chr3L 7889079 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-405 1367 chr3L 7916819 7916861 chr3L 7926005 7926047 roo 15 9189 5.5 8.5 7.0 1.9 9228 chr3L 7916819 3` UTR syd - chr3L 7921433 intron syd - chr3L 7926047 3` UTR syd - chr3L_15_7920001 chr3L_7920001 RAL-405 1368 chr3L 7985349 7985399 chr3L 7987697 7987699 NOF 15 2344 2.5 4.5 3.5 3.3 2350 chr3L 7985349 intron nmo + chr3L 7986524 intron nmo + chr3L 7987699 intron nmo + chr3L_15_7985001 chr3L_7985001 RAL-405 1369 chr3L 8001348 8001374 chr3L 8001773 8001778 6 417 0.5 8.5 4.5 1.1 430 chr3L 8001348 intron nmo + chr3L 8001563 intron nmo + chr3L 8001778 intron nmo + chr3L_6_8000001 chr3L_8000001 RAL-405 1370 chr3L 8001376 8001383 chr3L 8001760 8001795 6 394 0.5 4.0 2.2 1.9 419 chr3L 8001376 intron nmo + chr3L 8001586 intron nmo + chr3L 8001795 intron nmo + chr3L_6_8000001 chr3L_8000001 RAL-405 1371 chr3L 8019687 8019694 chr3L 8024120 8024127 NOF 4 4433 14.5 3.0 8.8 0.4 4440 chr3L 8019687 intron nmo + chr3L 8021907 intron nmo + chr3L 8024127 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-405 1372 chr3L 8019696 8019728 chr3L 8024119 8024145 NOF 12 4422 8.0 3.0 5.5 1.8 4449 chr3L 8019696 intron nmo + chr3L 8021920 intron nmo + chr3L 8024145 intron nmo + chr3L_12_8020001 chr3L_8020001 RAL-405 1373 chr3L 8064578 8064631 chr3L 8064812 8064837 6 228 0.5 0.0 0.2 5.0 259 chr3L 8064578 intron Ect4 + chr3L 8064708 intron Ect4 + chr3L 8064837 intron Ect4 + chr3L_6_8060001 chr3L_8060001 RAL-405 1374 chr3L 8178763 8178793 chr3L 8178888 8178907 10 131 9.0 7.0 8.0 1.1 144 chr3L 8178763 exon mthl7 - chr3L 8178835 exon mthl7 - chr3L 8178907 intron mthl7 - chr3L_10_8175001 chr3L_8175001 RAL-405 1375 chr3L 8226695 8226746 chr3L 8226814 8226865 6 119 1.5 1.5 1.5 2.4 170 chr3L 8226695 intergenic not near genes chr3L 8226780 intergenic not near genes chr3L 8226865 intergenic not near genes chr3L_6_8225001 chr3L_8225001 RAL-405 1376 chr3L 8243796 8243838 chr3L 8243899 8243940 7 103 5.0 3.0 4.0 1.4 144 chr3L 8243796 intron Dscam4 + chr3L 8243868 intron Dscam4 + chr3L 8243940 intron Dscam4 + chr3L_7_8240001 chr3L_8240001 RAL-405 1377 chr3L 8295779 8295822 chr3L 8295957 8296000 15 172 7.0 8.0 7.5 1.8 221 chr3L 8295779 intergenic CG7201 - chr3L 8295890 intergenic not near genes chr3L 8296000 intergenic not near genes chr3L_15_8295001 chr3L_8295001 RAL-405 1378 chr3L 8364503 8364536 chr3L 8364614 8364647 13 110 4.0 0.5 2.2 4.1 144 chr3L 8364503 intergenic not near genes chr3L 8364575 intergenic not near genes chr3L 8364647 intergenic not near genes chr3L_13_8360001 chr3L_8360001 RAL-405 1379 chr3L 8394021 8394034 chr3L 8394112 8394130 4 94 4.0 9.0 6.5 0.5 109 chr3L 8394021 intergenic Jon66Cii - chr3L 8394076 intergenic Jon66Cii - chr3L 8394130 intergenic Jon66Cii - chr3L_4_8390001 chr3L_8390001 RAL-405 1380 chr3L 8394037 8394059 chr3L 8394108 8394155 10 81 4.0 7.0 5.5 1.5 118 chr3L 8394037 intergenic Jon66Cii - chr3L 8394096 intergenic Jon66Cii - chr3L 8394155 intergenic not near genes chr3L_10_8390001 chr3L_8390001 RAL-405 1381 chr3L 8442918 8442947 chr3L 8443007 8443048 10 95 0.0 10.5 5.2 1.6 130 chr3L 8442918 intergenic CG6983 - chr3L 8442983 intergenic CG6983 - chr3L 8443048 3` UTR CG6983 - chr3L_10_8440001 chr3L_8440001 RAL-405 1382 chr3L 8443547 8443583 chr3L 8443648 8443680 5 99 4.5 5.5 5.0 0.8 133 chr3L 8443547 3` UTR CG6983 - chr3L 8443614 3` UTR CG6983 - chr3L 8443680 3` UTR CG6983 - chr3L_5_8440001 chr3L_8440001 RAL-405 1383 chr3L 8643559 8643580 chr3L 8643655 8643676 9 95 4.5 3.0 3.8 1.9 117 chr3L 8643559 3` UTR Cpr66D + chr3L 8643618 intergenic Cpr66D + chr3L 8643676 intergenic Cpr66D + chr3L_9_8640001 chr3L_8640001 RAL-405 1384 chr3L 8643583 8643591 chr3L 8643649 8643687 5 89 4.5 2.5 3.5 1.1 104 chr3L 8643583 3` UTR Cpr66D + chr3L 8643635 intergenic Cpr66D + chr3L 8643687 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-405 1385 chr3L 8651848 8651876 chr3L 8651969 8651996 11 120 0.0 6.5 3.2 2.6 148 chr3L 8651848 intergenic not near genes chr3L 8651922 intergenic not near genes chr3L 8651996 intergenic not near genes chr3L_11_8650001 chr3L_8650001 RAL-405 1386 chr3L 8721199 8721213 chr3L 8721320 8721324 5 119 7.0 0.5 3.8 1.0 125 chr3L 8721199 5` UTR CG32022 - chr3L 8721262 5` UTR CG32022 - chr3L 8721324 5` UTR CG6511 + chr3L_5_8720001 chr3L_8720001 RAL-405 1387 chr3L 8763864 8763905 chr3L 13374964 13374966 5 4611085 1.0 8.0 4.5 0.9 4611102 chr3L 8763864 intron Fhos + chr3L 11069415 exon CG6310 - chr3L 13374966 intergenic not near genes chr3L_5_11065001 chr3L_11065001 RAL-405 1388 chr3L 8782107 8782151 chr3L 8782253 8782277 11 143 3.5 6.5 5.0 1.8 170 chr3L 8782107 intron Fhos + chr3L 8782192 intron Fhos + chr3L 8782277 intron Fhos + chr3L_11_8780001 chr3L_8780001 RAL-405 1389 chr3L 8791266 8791275 chr3L 8796701 8796715 I-element 4 5438 10.0 11.0 10.5 0.3 5449 chr3L 8791266 exon Fhos + chr3L 8793990 intron Fhos + chr3L 8796715 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-405 1390 chr3L 8791279 8791308 chr3L 8796693 8796720 I-element 12 5428 7.0 7.5 7.2 1.5 5441 chr3L 8791279 exon Fhos + chr3L 8794000 intron Fhos + chr3L 8796720 intron Fhos + chr3L_12_8790001 chr3L_8790001 RAL-405 1391 chr3L 8839746 8839749 chr3L 8839855 8839858 4 108 5.5 3.0 4.2 0.8 112 chr3L 8839746 intron dally + chr3L 8839802 intron dally + chr3L 8839858 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-405 1392 chr3L 8859339 8859351 chr3L 8859417 8859429 5 88 2.5 5.0 3.8 1.0 90 chr3L 8859339 intron dally + chr3L 8859384 intron dally + chr3L 8859429 intron dally + chr3L_5_8855001 chr3L_8855001 RAL-405 1393 chr3L 8861531 8861551 chr3L 8861616 8861662 12 104 0.5 3.0 1.8 4.3 131 chr3L 8861531 intron dally + chr3L 8861596 intron dally + chr3L 8861662 intron dally + chr3L_12_8860001 chr3L_8860001 RAL-405 1394 chr3L 8928248 8928295 chr3L 8928344 8928391 13 95 4.0 3.0 3.5 2.9 143 chr3L 8928248 intron Tsp66E + chr3L 8928320 intron Tsp66E + chr3L 8928391 intron Tsp66E + chr3L_13_8925001 chr3L_8925001 RAL-405 1395 chr3L 9003950 9003976 chr3L 9004050 9004071 9 102 1.0 8.5 4.8 1.6 121 chr3L 9003950 intergenic not near genes chr3L 9004010 intergenic not near genes chr3L 9004071 intergenic not near genes chr3L_9_9000001 chr3L_9000001 RAL-405 1396 chr3L 9011113 9011120 chr3L 9011214 9011226 5 105 8.0 4.0 6.0 0.7 113 chr3L 9011113 intergenic not near genes chr3L 9011170 intergenic not near genes chr3L 9011226 intergenic not near genes chr3L_5_9010001 chr3L_9010001 RAL-405 1397 chr3L 9047076 9047105 chr3L 9047178 9047211 4 106 0.5 0.0 0.2 3.3 135 chr3L 9047076 intergenic CG5144 + chr3L 9047144 intergenic CG5144 + chr3L 9047211 intergenic CG5144 + chr3L_4_9045001 chr3L_9045001 RAL-405 1398 chr3L 9076912 9076952 chr3L 9084492 9084512 412 5 7575 2.5 5.5 4.0 1.0 7600 chr3L 9076912 exon Tequila + chr3L 9080712 intron Tequila + chr3L 9084512 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-405 1399 chr3L 9164691 9164726 chr3L 9166162 9166184 hobo 9 1474 1.5 4.0 2.8 2.4 1493 chr3L 9164691 intron Rdl - chr3L 9165438 intron Rdl - chr3L 9166184 intron Rdl - chr3L_9_9165001 chr3L_9165001 RAL-405 1400 chr3L 9219253 9219280 chr3L 9219914 9219919 jockey 5 659 1.5 1.5 1.5 2.0 666 chr3L 9219253 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219919 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-405 1401 chr3L 9239681 9239723 chr3L 9240006 9240048 6 321 3.0 5.0 4.0 1.2 367 chr3L 9239681 intergenic not near genes chr3L 9239864 intergenic not near genes chr3L 9240048 intergenic not near genes chr3L_6_9235001 chr3L_9235001 RAL-405 1402 chr3L 9241107 9241141 chr3L 9241202 9241241 15 97 7.5 2.0 4.8 2.6 134 chr3L 9241107 intergenic not near genes chr3L 9241174 intergenic not near genes chr3L 9241241 intergenic not near genes chr3L_15_9240001 chr3L_9240001 RAL-405 1403 chr3L 9270606 9270622 chr3L 9278381 9278395 roo 4 7773 8.0 3.0 5.5 0.6 7789 chr3L 9270606 intron GluRIB + chr3L 9274500 intron GluRIB + chr3L 9278395 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-405 1404 chr3L 9270634 9270647 chr3L 9278379 9278422 roo 6 7759 5.0 2.5 3.8 1.2 7788 chr3L 9270634 intron GluRIB + chr3L 9274528 intron GluRIB + chr3L 9278422 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-405 1405 chr3L 9334061 9334103 chr3L 9334212 9334245 16 150 2.0 5.5 3.8 3.3 184 chr3L 9334061 intergenic PGRP-LA + chr3L 9334153 intergenic PGRP-LA + chr3L 9334245 intergenic PGRP-LA + chr3L_16_9330001 chr3L_9330001 RAL-405 1406 chr3L 9337429 9337464 chr3L 9338798 9338823 10 1353 11.5 24.5 18.0 0.5 1394 chr3L 9337429 intron PGRP-LA + chr3L 9338126 3` UTR PGRP-LA + chr3L 9338823 intergenic PGRP-LA + chr3L_10_9335001 chr3L_9335001 RAL-405 1407 chr3L 9443490 9443541 chr3L 9445301 9445321 S-element 17 1806 5.0 6.0 5.5 2.6 1831 chr3L 9443490 intron CG33926 + chr3L 9444406 intron CG33926 + chr3L 9445321 intron CG33926 + chr3L_17_9440001 chr3L_9440001 RAL-405 1408 chr3L 9493619 9493643 chr3L 9493692 9493711 5 80 5.5 9.0 7.2 0.6 92 chr3L 9493619 intergenic not near genes chr3L 9493665 intergenic not near genes chr3L 9493711 intergenic not near genes chr3L_5_9490001 chr3L_9490001 RAL-405 1409 chr3L 9501679 9501734 chr3L 9502185 9502240 roo 15 500 4.5 7.0 5.8 2.2 561 chr3L 9501679 intron path - chr3L 9501960 intron path - chr3L 9502240 intron path - chr3L_15_9500001 chr3L_9500001 RAL-405 1410 chr3L 9503453 9503461 chr3L 9503562 9503570 5 109 8.0 13.0 10.5 0.4 117 chr3L 9503453 intron path - chr3L 9503512 intron path - chr3L 9503570 intron path - chr3L_5_9500001 chr3L_9500001 RAL-405 1411 chr3L 9513430 9513472 chr3L 9513532 9513577 15 101 3.0 9.5 6.2 2.1 147 chr3L 9513430 intergenic CG33702 - chr3L 9513504 intergenic CG33702 - chr3L 9513577 intergenic CG33702 - chr3L_15_9510001 chr3L_9510001 RAL-405 1412 chr3L 9571882 9571934 chr3L 9572250 9572292 jockey 21 361 3.5 8.0 5.8 3.1 410 chr3L 9571882 intron CG42673 + chr3L 9572087 intron CG42673 + chr3L 9572292 intron CG42673 + chr3L_21_9570001 chr3L_9570001 RAL-405 1413 chr3L 9575909 9575949 chr3L 9580987 9581000 jockey 12 5089 3.0 2.5 2.8 3.2 5091 chr3L 9575909 intron CG42673 + chr3L 9578454 intron CG42673 + chr3L 9581000 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-405 1414 chr3L 9629719 9629764 chr3L 9629815 9629860 14 89 5.5 6.0 5.8 2.1 141 chr3L 9629719 intron CG8336 + chr3L 9629790 intron CG8336 + chr3L 9629860 intron CG8336 + chr3L_14_9625001 chr3L_9625001 RAL-405 1415 chr3L 9635562 9635607 chr3L 9635654 9635699 10 92 3.0 4.5 3.8 2.1 137 chr3L 9635562 intron fry - chr3L 9635630 intron fry - chr3L 9635699 exon fry - chr3L_10_9635001 chr3L_9635001 RAL-405 1416 chr3L 9741612 9741629 chr3L 9741719 9741741 9 111 8.0 7.0 7.5 1.1 129 chr3L 9741612 intron,intron CG42268 -,CR44348 + chr3L 9741676 intron,intron CG42268 -,CR44348 + chr3L 9741741 intron,intron CG42268 -,CR44348 + chr3L_9_9740001 chr3L_9740001 RAL-405 1417 chr3L 9786825 9786834 chr3L 9786889 9786930 4 77 0.5 1.5 1.0 2.0 105 chr3L 9786825 intergenic CG8177 + chr3L 9786878 intergenic CG8177 + chr3L 9786930 intergenic CG8177 + chr3L_4_9785001 chr3L_9785001 RAL-405 1418 chr3L 9831687 9831710 chr3L 9831788 9831809 7 99 5.5 7.5 6.5 0.9 122 chr3L 9831687 intron CG43897 + chr3L 9831748 intron CG43897 + chr3L 9831809 intron CG43897 + chr3L_7_9830001 chr3L_9830001 RAL-405 1419 chr3L 9831711 9831717 chr3L 9831787 9831818 5 90 3.5 7.0 5.2 0.8 107 chr3L 9831711 intron CG43897 + chr3L 9831764 intron CG43897 + chr3L 9831818 intron CG43897 + chr3L_5_9830001 chr3L_9830001 RAL-405 1420 chr3L 9871176 9871219 chr3L 9871292 9871335 15 114 2.5 1.5 2.0 5.0 159 chr3L 9871176 intergenic not near genes chr3L 9871256 intergenic not near genes chr3L 9871335 intergenic not near genes chr3L_15_9870001 chr3L_9870001 RAL-405 1421 chr3L 9918869 9918892 chr3L 9918976 9919006 5 107 9.0 2.0 5.5 0.8 137 chr3L 9918869 intron CG34356 + chr3L 9918938 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-405 1422 chr3L 9918893 9918913 chr3L 9918974 9919003 5 93 7.0 2.0 4.5 0.9 110 chr3L 9918893 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919003 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-405 1423 chr3L 9929649 9929694 chr3L 9938447 9938493 roo 8 8792 6.0 7.5 6.8 1.0 8844 chr3L 9929649 intron CG34356 + chr3L 9934071 intron CG34356 + chr3L 9938493 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-405 1424 chr3L 10007178 10007183 chr3L 10007301 10007306 4 123 8.0 9.0 8.5 0.4 128 chr3L 10007178 intron dpr6 + chr3L 10007242 intron dpr6 + chr3L 10007306 intron dpr6 + chr3L_4_10005001 chr3L_10005001 RAL-405 1425 chr3L 10007184 10007204 chr3L 10007292 10007327 8 117 5.0 8.0 6.5 1.1 143 chr3L 10007184 intron dpr6 + chr3L 10007256 intron dpr6 + chr3L 10007327 intron dpr6 + chr3L_8_10005001 chr3L_10005001 RAL-405 1426 chr3L 10060094 10060117 chr3L 10067693 10067716 17.6 11 7598 6.0 3.5 4.8 1.9 7622 chr3L 10060094 intron dpr6 + chr3L 10063905 intron dpr6 + chr3L 10067716 intron dpr6 + chr3L_11_10060001 chr3L_10060001 RAL-405 1427 chr3L 10199284 10199316 chr3L 10199715 10199763 8 444 1.0 6.0 3.5 1.8 479 chr3L 10199284 intron ect - chr3L 10199524 intron ect - chr3L 10199763 intron ect - chr3L_8_10195001 chr3L_10195001 RAL-405 1428 chr3L 10214711 10214827 chr3L 10214818 10214947 9 110 0.5 0.5 0.5 6.0 236 chr3L 10214711 intergenic not near genes chr3L 10214829 intergenic not near genes chr3L 10214947 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-405 1429 chr3L 10308747 10308771 chr3L 10308844 10308852 5 93 1.0 5.0 3.0 1.2 105 chr3L 10308747 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-405 1430 chr3L 10381306 10381355 chr3L 10381405 10381448 13 92 1.0 0.0 0.5 8.7 142 chr3L 10381306 intergenic not near genes chr3L 10381377 intergenic not near genes chr3L 10381448 intergenic not near genes chr3L_13_10380001 chr3L_10380001 RAL-405 1431 chr3L 10414940 10414972 chr3L 10417316 10417344 Doc 6 2374 4.5 4.0 4.2 1.2 2404 chr3L 10414940 intergenic CG12362 + chr3L 10416142 intergenic not near genes chr3L 10417344 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-405 1432 chr3L 10565321 10565362 chr3L 10565420 10565456 6 94 2.5 2.0 2.2 1.9 135 chr3L 10565321 intron A2bp1 + chr3L 10565388 intron A2bp1 + chr3L 10565456 intron A2bp1 + chr3L_6_10565001 chr3L_10565001 RAL-405 1433 chr3L 10600438 10600454 chr3L 10600540 10600545 6 99 7.5 4.0 5.8 0.9 107 chr3L 10600438 intergenic not near genes chr3L 10600492 intergenic not near genes chr3L 10600545 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-405 1434 chr3L 10600466 10600477 chr3L 10600537 10600579 9 98 5.0 4.0 4.5 1.6 113 chr3L 10600466 intergenic not near genes chr3L 10600522 intergenic not near genes chr3L 10600579 intergenic not near genes chr3L_9_10600001 chr3L_10600001 RAL-405 1435 chr3L 10621825 10621871 chr3L 10621932 10621967 6 105 7.0 2.5 4.8 1.0 142 chr3L 10621825 intergenic not near genes chr3L 10621896 intergenic not near genes chr3L 10621967 intergenic not near genes chr3L_6_10620001 chr3L_10620001 RAL-405 1436 chr3L 10650961 10650981 chr3L 10651057 10651057 7 92 0.0 0.5 0.2 5.8 96 chr3L 10650961 intron CG32066 - chr3L 10651009 intron CG32066 - chr3L 10651057 intron CG32066 - chr3L_7_10650001 chr3L_10650001 RAL-405 1437 chr3L 10658056 10658207 chr3L 10658153 10658350 38 119 0.0 0.5 0.2 31.7 294 chr3L 10658056 intron CG32066 - chr3L 10658203 intron CG32066 - chr3L 10658350 intron CG32066 - chr3L_38_10655001 chr3L_10655001 RAL-405 1438 chr3L 10739871 10739875 chr3L 10740000 10740004 4 129 0.0 1.5 0.8 2.2 133 chr3L 10739871 intergenic not near genes chr3L 10739938 intergenic not near genes chr3L 10740004 intergenic not near genes chr3L_4_10735001 chr3L_10735001 RAL-405 1439 chr3L 10887365 10887375 chr3L 10887464 10887474 5 99 0.0 7.0 3.5 1.1 109 chr3L 10887365 intergenic not near genes chr3L 10887420 intergenic not near genes chr3L 10887474 intergenic not near genes chr3L_5_10885001 chr3L_10885001 RAL-405 1440 chr3L 10888801 10888843 chr3L 10888933 10888975 19 130 8.5 4.0 6.2 2.6 174 chr3L 10888801 intergenic not near genes chr3L 10888888 intergenic not near genes chr3L 10888975 intergenic not near genes chr3L_19_10885001 chr3L_10885001 RAL-405 1441 chr3L 10888845 10888851 chr3L 10888930 10888983 4 115 7.0 2.5 4.8 0.7 138 chr3L 10888845 intergenic not near genes chr3L 10888914 intergenic not near genes chr3L 10888983 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-405 1442 chr3L 10910676 10910700 chr3L 10910774 10910793 8 97 2.0 7.0 4.5 1.5 117 chr3L 10910676 intergenic not near genes chr3L 10910734 intergenic not near genes chr3L 10910793 intergenic not near genes chr3L_8_10910001 chr3L_10910001 RAL-405 1443 chr3L 10956429 10956463 chr3L 10956567 10956585 5 135 3.5 3.0 3.2 1.2 156 chr3L 10956429 intergenic not near genes chr3L 10956507 intergenic not near genes chr3L 10956585 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-405 1444 chr3L 10957009 10957033 chr3L 10957080 10957099 7 77 2.5 2.5 2.5 2.0 90 chr3L 10957009 intergenic not near genes chr3L 10957054 intergenic not near genes chr3L 10957099 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-405 1445 chr3L 11018557 11018578 chr3L 11018653 11018684 11 100 5.5 4.0 4.8 1.9 127 chr3L 11018557 intergenic not near genes chr3L 11018620 intergenic not near genes chr3L 11018684 intergenic not near genes chr3L_11_11015001 chr3L_11015001 RAL-405 1446 chr3L 11042097 11042154 chr3L 11042256 11042308 8 158 3.0 0.0 1.5 3.2 211 chr3L 11042097 intron CG43693 - chr3L 11042202 intron CG43693 - chr3L 11042308 intron CG43693 - chr3L_8_11040001 chr3L_11040001 RAL-405 1447 chr3L 11083487 11083538 chr3L 11083605 11083641 19 114 8.0 6.0 7.0 2.4 154 chr3L 11083487 intron JIL-1 - chr3L 11083564 intron JIL-1 - chr3L 11083641 intron JIL-1 - chr3L_19_11080001 chr3L_11080001 RAL-405 1448 chr3L 11085667 11085701 chr3L 11085769 11085804 14 101 1.5 8.5 5.0 2.3 137 chr3L 11085667 exon JIL-1 - chr3L 11085736 intron JIL-1 - chr3L 11085804 intron JIL-1 - chr3L_14_11085001 chr3L_11085001 RAL-405 1449 chr3L 11087067 11087088 chr3L 11088856 11088897 S-element 4 1800 1.5 1.0 1.2 1.8 1830 chr3L 11087067 intron JIL-1 - chr3L 11087982 intron JIL-1 - chr3L 11088897 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-405 1450 chr3L 11090073 11090085 chr3L 11090151 11090188 4 99 4.0 4.5 4.2 0.8 115 chr3L 11090073 intron JIL-1 - chr3L 11090130 intron JIL-1 - chr3L 11090188 intron JIL-1 - chr3L_4_11090001 chr3L_11090001 RAL-405 1451 chr3L 11131793 11131805 chr3L 11132072 11132084 4 279 6.0 1.0 3.5 0.9 291 chr3L 11131793 intron CG42575 + chr3L 11131938 intron,3` UTR CG42575 +,CG32074 - chr3L 11132084 intron,exon CG42575 +,CG32074 - chr3L_4_11130001 chr3L_11130001 RAL-405 1452 chr3L 11135508 11135799 chr3L 11135758 11135904 18 175 2.5 2.5 2.5 5.1 396 chr3L 11135508 intergenic CG14143 + chr3L 11135706 intergenic CG14143 +,CG32082 + chr3L 11135904 intergenic CG32082 +,CG14143 + chr3L_18_11135001 chr3L_11135001 RAL-405 1453 chr3L 11141418 11141466 chr3L 11141519 11141581 9 112 4.0 0.0 2.0 3.0 163 chr3L 11141418 intron CG32082 + chr3L 11141500 intron CG32082 + chr3L 11141581 intron CG32082 + chr3L_9_11140001 chr3L_11140001 RAL-405 1454 chr3L 11145544 11145554 chr3L 11145643 11145659 4 106 0.0 3.5 1.8 1.4 115 chr3L 11145544 intron CG32082 + chr3L 11145602 intron CG32082 + chr3L 11145659 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-405 1455 chr3L 11180646 11180654 chr3L 11180769 11180777 6 126 7.0 8.0 7.5 0.7 131 chr3L 11180646 intron GlcAT-P - chr3L 11180712 intron GlcAT-P - chr3L 11180777 intron GlcAT-P - chr3L_6_11180001 chr3L_11180001 RAL-405 1456 chr3L 11245071 11245116 chr3L 11245183 11245228 13 106 4.5 2.5 3.5 2.9 157 chr3L 11245071 intergenic not near genes chr3L 11245150 intergenic not near genes chr3L 11245228 intergenic not near genes chr3L_13_11245001 chr3L_11245001 RAL-405 1457 chr3L 11264451 11264496 chr3L 11271418 11271451 17.6 7 6965 4.5 5.5 5.0 1.2 7000 chr3L 11264451 intergenic not near genes chr3L 11267951 intergenic not near genes chr3L 11271451 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-405 1458 chr3L 11290607 11290657 chr3L 11290950 11291000 16 340 3.5 3.5 3.5 3.6 393 chr3L 11290607 intron CG6175 - chr3L 11290804 intron CG6175 - chr3L 11291000 intron CG6175 - chr3L_16_11290001 chr3L_11290001 RAL-405 1459 chr3L 11304821 11304837 chr3L 11304938 11304949 5 116 1.0 0.0 0.5 3.3 128 chr3L 11304821 intergenic not near genes chr3L 11304885 intergenic not near genes chr3L 11304949 intergenic not near genes chr3L_5_11300001 chr3L_11300001 RAL-405 1460 chr3L 11432887 11432934 chr3L 11432984 11433033 19 94 2.0 2.0 2.0 6.3 146 chr3L 11432887 intergenic not near genes chr3L 11432960 intergenic not near genes chr3L 11433033 intergenic not near genes chr3L_19_11430001 chr3L_11430001 RAL-405 1461 chr3L 11499039 11499045 chr3L 11508218 11508224 roo 5 9179 19.5 8.0 13.8 0.3 9185 chr3L 11499039 3` UTR chrb + chr3L 11503632 intergenic not near genes chr3L 11508224 intergenic CG33500 + chr3L_5_11500001 chr3L_11500001 RAL-405 1462 chr3L 11534986 11535027 chr3L 11535090 11535111 7 99 5.5 0.5 3.0 1.8 125 chr3L 11534986 intron Mob2 - chr3L 11535048 intron Mob2 - chr3L 11535111 intron Mob2 - chr3L_7_11535001 chr3L_11535001 RAL-405 1463 chr3L 11579540 11579585 chr3L 11579661 11579691 10 122 3.5 6.5 5.0 1.7 151 chr3L 11579540 intergenic CG43390 - chr3L 11579616 intergenic CG43390 - chr3L 11579691 intergenic CG43390 - chr3L_10_11575001 chr3L_11575001 RAL-405 1464 chr3L 11587916 11587953 chr3L 11587997 11588049 6 91 7.5 3.0 5.2 1.0 133 chr3L 11587916 intergenic rt - chr3L 11587982 intergenic rt - chr3L 11588049 intergenic rt - chr3L_6_11585001 chr3L_11585001 RAL-405 1465 chr3L 11588711 11588758 chr3L 11588887 11588923 19 170 1.5 4.5 3.0 4.8 212 chr3L 11588711 intergenic not near genes chr3L 11588817 intergenic not near genes chr3L 11588923 intergenic not near genes chr3L_19_11585001 chr3L_11585001 RAL-405 1466 chr3L 11642799 11642848 chr3L 11642895 11642919 15 84 4.0 6.0 5.0 2.5 120 chr3L 11642799 3` UTR CG32091 + chr3L 11642859 3` UTR CG32091 + chr3L 11642919 3` UTR CG6071 - chr3L_15_11640001 chr3L_11640001 RAL-405 1467 chr3L 11723075 11723098 chr3L 11727881 11727913 Doc 13 4812 11.0 10.5 10.8 1.1 4838 chr3L 11723075 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727913 3` UTR Bmcp + chr3L_13_11725001 chr3L_11725001 RAL-405 1468 chr3L 11723099 11723112 chr3L 11727879 11727927 Doc 7 4808 5.5 9.5 7.5 0.8 4828 chr3L 11723099 3` UTR Bmcp + chr3L 11725513 intron Bmcp + chr3L 11727927 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-405 1469 chr3L 11743997 11744043 chr3L 11744125 11744126 25 113 2.5 4.5 3.5 5.6 129 chr3L 11743997 exon CG6024 - chr3L 11744062 intron CG6024 - chr3L 11744126 intron CG6024 - chr3L_25_11740001 chr3L_11740001 RAL-405 1470 chr3L 11756017 11756063 chr3L 11756118 11756159 5 96 2.0 0.0 1.0 2.5 142 chr3L 11756017 intron CG6024 - chr3L 11756088 intron CG6024 - chr3L 11756159 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-405 1471 chr3L 9313026 9313027 chr3L 11777678 11777678 4 2464652 5.0 5.5 5.2 0.6 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-405 1472 chr3L 11780529 11780547 chr3L 11780634 11780652 8 105 12.5 9.0 10.8 0.7 123 chr3L 11780529 intron Pi3K68D - chr3L 11780590 intron Pi3K68D - chr3L 11780652 intron Pi3K68D - chr3L_8_11780001 chr3L_11780001 RAL-405 1473 chr3L 11780548 11780568 chr3L 11780632 11780645 11 99 6.5 8.0 7.2 1.3 97 chr3L 11780548 intron Pi3K68D - chr3L 11780596 intron Pi3K68D - chr3L 11780645 intron Pi3K68D - chr3L_11_11780001 chr3L_11780001 RAL-405 1474 chr3L 11810538 11810544 chr3L 11810636 11810642 4 98 0.0 2.5 1.2 1.8 104 chr3L 11810538 intron CG42255 - chr3L 11810590 intron CG42255 - chr3L 11810642 exon CG42255 - chr3L_4_11810001 chr3L_11810001 RAL-405 1475 chr3L 11811442 11811475 chr3L 11811540 11811548 16 95 9.5 5.5 7.5 1.9 106 chr3L 11811442 intron CG42255 - chr3L 11811495 intron CG42255 - chr3L 11811548 exon CG42255 - chr3L_16_11810001 chr3L_11810001 RAL-405 1476 chr3L 11811479 11811489 chr3L 11811532 11811587 4 84 5.5 4.0 4.8 0.7 108 chr3L 11811479 intron CG42255 - chr3L 11811533 intron CG42255 - chr3L 11811587 exon CG42255 - chr3L_4_11810001 chr3L_11810001 RAL-405 1477 chr3L 11833696 11833739 chr3L 11833820 11833828 5 116 4.5 6.0 5.2 0.8 132 chr3L 11833696 intergenic CycA - chr3L 11833762 intergenic CycA - chr3L 11833828 intergenic CycA - chr3L_5_11830001 chr3L_11830001 RAL-405 1478 chr3L 11837155 11837162 chr3L 11837256 11837258 4 98 4.0 0.5 2.2 1.2 103 chr3L 11837155 intergenic CG43064 - chr3L 11837206 intergenic CG43064 - chr3L 11837258 intergenic not near genes chr3L_4_11835001 chr3L_11835001 RAL-405 1479 chr3L 11847133 11847174 chr3L 11847233 11847264 12 106 2.0 0.5 1.2 5.5 131 chr3L 11847133 intergenic CG12521 - chr3L 11847198 intergenic CG12521 - chr3L 11847264 intergenic CG12521 - chr3L_12_11845001 chr3L_11845001 RAL-405 1480 chr3L 11849328 11849347 chr3L 11849447 11849467 11 119 4.0 8.5 6.2 1.5 139 chr3L 11849328 intergenic not near genes chr3L 11849398 intergenic not near genes chr3L 11849467 intergenic not near genes chr3L_11_11845001 chr3L_11845001 RAL-405 1481 chr3L 11849348 11849356 chr3L 11849442 11849476 8 115 3.0 7.5 5.2 1.3 128 chr3L 11849348 intergenic not near genes chr3L 11849412 intergenic not near genes chr3L 11849476 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-405 1482 chr3L 11850147 11850166 chr3L 11850242 11850271 8 108 3.0 1.0 2.0 2.7 124 chr3L 11850147 intergenic not near genes chr3L 11850209 intergenic CG44837 - chr3L 11850271 intergenic CG44837 - chr3L_8_11850001 chr3L_11850001 RAL-405 1483 chr3L 11864564 11864585 chr3L 11865859 11865900 pogo 12 1308 2.0 9.0 5.5 1.8 1336 chr3L 11864564 intron CG44837 - chr3L 11865232 intron CG44837 - chr3L 11865900 intron CG44837 - chr3L_12_11865001 chr3L_11865001 RAL-405 1484 chr3L 11871329 11871368 chr3L 11871428 11871467 15 96 0.5 2.0 1.2 6.8 138 chr3L 11871329 intron CG44837 - chr3L 11871398 intron CG44837 - chr3L 11871467 intron CG44837 - chr3L_15_11870001 chr3L_11870001 RAL-405 1485 chr3L 11917440 11917483 chr3L 11917611 11917654 9 168 5.0 2.0 3.5 2.0 214 chr3L 11917440 intron CG44837 - chr3L 11917547 intron CG44837 - chr3L 11917654 intron CG44837 - chr3L_9_11915001 chr3L_11915001 RAL-405 1486 chr3L 11943488 11943521 chr3L 11943595 11943637 17 116 2.5 5.0 3.8 3.5 149 chr3L 11943488 intergenic Rpt4R +,CG5883 - chr3L 11943562 intergenic Rpt4R +,CG5883 - chr3L 11943637 intergenic CG5883 -,Rpt4R + chr3L_17_11940001 chr3L_11940001 RAL-405 1487 chr3L 12013898 12013938 chr3L 12014004 12014033 9 105 2.5 1.0 1.8 3.2 135 chr3L 12013898 intron rols - chr3L 12013966 intron rols - chr3L 12014033 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-405 1488 chr3L 12050786 12050839 chr3L 12050893 12050946 28 104 5.0 4.0 4.5 5.1 160 chr3L 12050786 intron rols - chr3L 12050866 intron rols - chr3L 12050946 intron rols - chr3L_28_12050001 chr3L_12050001 RAL-405 1489 chr3L 12092394 12092404 chr3L 12092491 12092501 5 97 6.0 6.0 6.0 0.7 107 chr3L 12092394 intergenic not near genes chr3L 12092448 intergenic not near genes chr3L 12092501 intergenic not near genes chr3L_5_12090001 chr3L_12090001 RAL-405 1490 chr3L 12273119 12273129 chr3L 12273412 12273445 5 310 4.5 4.0 4.2 1.0 326 chr3L 12273119 intron CG4300 - chr3L 12273282 intron CG4300 - chr3L 12273445 intron CG4300 - chr3L_5_12270001 chr3L_12270001 RAL-405 1491 chr3L 12312496 12312511 chr3L 12312570 12312584 5 84 2.5 5.0 3.8 1.0 88 chr3L 12312496 intergenic not near genes chr3L 12312540 intergenic not near genes chr3L 12312584 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-405 1492 chr3L 12344968 12345001 chr3L 12345067 12345096 18 99 1.0 4.5 2.8 4.7 128 chr3L 12344968 intron CrzR - chr3L 12345032 intron CrzR - chr3L 12345096 intron CrzR - chr3L_18_12345001 chr3L_12345001 RAL-405 1493 chr3L 12369518 12369544 chr3L 12369628 12369654 10 108 4.5 3.5 4.0 2.0 136 chr3L 12369518 intron Ncc69 - chr3L 12369586 intron Ncc69 - chr3L 12369654 intron Ncc69 - chr3L_10_12365001 chr3L_12365001 RAL-405 1494 chr3L 12369547 12369567 chr3L 12369624 12369661 6 97 2.5 3.0 2.8 1.6 114 chr3L 12369547 intron Ncc69 - chr3L 12369604 intron Ncc69 - chr3L 12369661 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-405 1495 chr3L 12381524 12381546 chr3L 12381621 12381644 12 95 1.0 2.5 1.8 4.3 120 chr3L 12381524 intron Ncc69 - chr3L 12381584 intron Ncc69 - chr3L 12381644 intron Ncc69 - chr3L_12_12380001 chr3L_12380001 RAL-405 1496 chr3L 12446249 12446298 chr3L 12446347 12446366 4 86 2.5 1.5 2.0 1.3 117 chr3L 12446249 intergenic not near genes chr3L 12446308 intergenic not near genes chr3L 12446366 intergenic not near genes chr3L_4_12445001 chr3L_12445001 RAL-405 1497 chr3L 12451987 12452003 chr3L 12452113 12452128 4 126 6.5 6.0 6.2 0.6 141 chr3L 12451987 intergenic not near genes chr3L 12452058 intergenic not near genes chr3L 12452128 intergenic not near genes chr3L_4_12450001 chr3L_12450001 RAL-405 1498 chr3L 12458494 12458509 chr3L 12458613 12458628 4 119 6.5 12.5 9.5 0.4 134 chr3L 12458494 intergenic not near genes chr3L 12458561 intergenic not near genes chr3L 12458628 intergenic not near genes chr3L_4_12455001 chr3L_12455001 RAL-405 1499 chr3L 12467235 12467283 chr3L 12467340 12467388 10 104 0.0 5.5 2.8 2.6 153 chr3L 12467235 intron eyg - chr3L 12467312 intron eyg - chr3L 12467388 intron eyg - chr3L_10_12465001 chr3L_12465001 RAL-405 1500 chr3L 12476273 12476321 chr3L 12476365 12476417 10 93 3.0 5.5 4.2 1.9 144 chr3L 12476273 intron CG10663 - chr3L 12476345 intron CG10663 - chr3L 12476417 intron CG10663 - chr3L_10_12475001 chr3L_12475001 RAL-405 1501 chr3L 12626158 12626185 chr3L 12626282 12626299 5 123 3.0 0.0 1.5 2.0 141 chr3L 12626158 intergenic not near genes chr3L 12626228 intergenic not near genes chr3L 12626299 intergenic not near genes chr3L_5_12625001 chr3L_12625001 RAL-405 1502 chr3L 12647929 12647978 chr3L 12648025 12648066 12 95 3.5 4.5 4.0 2.4 137 chr3L 12647929 5` UTR CR32111 + chr3L 12647998 5` UTR CR32111 + chr3L 12648066 5` UTR CR32111 + chr3L_12_12645001 chr3L_12645001 RAL-405 1503 chr3L 12801976 12802006 chr3L 12802067 12802102 7 90 4.0 8.0 6.0 1.0 126 chr3L 12801976 intron Atg1 - chr3L 12802039 intron Atg1 - chr3L 12802102 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-405 1504 chr3L 12857981 12858005 chr3L 12858094 12858094 9 112 3.0 6.0 4.5 1.6 113 chr3L 12857981 3` UTR CG32107 - chr3L 12858038 3` UTR CG32107 - chr3L 12858094 3` UTR CG32107 - chr3L_9_12855001 chr3L_12855001 RAL-405 1505 chr3L 12874907 12874942 chr3L 12877219 12877254 jockey 13 2308 2.5 4.5 3.5 2.9 2347 chr3L 12874907 intergenic not near genes chr3L 12876080 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_13_12875001 chr3L_12875001 RAL-405 1506 chr3L 12874945 12874956 chr3L 12877217 12877263 jockey 6 2298 0.5 4.5 2.5 1.7 2318 chr3L 12874945 intergenic not near genes chr3L 12876104 intergenic not near genes chr3L 12877263 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-405 1507 chr3L 12894796 12894812 chr3L 12894889 12894905 4 91 9.0 2.0 5.5 0.6 109 chr3L 12894796 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894905 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-405 1508 chr3L 12919256 12919287 chr3L 12924760 12924777 Rt1c 6 5497 5.0 2.0 3.5 1.3 5521 chr3L 12919256 intergenic not near genes chr3L 12922016 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-405 1509 chr3L 12957100 12957113 chr3L 12957448 12957466 6 350 3.0 4.0 3.5 1.3 366 chr3L 12957100 intergenic not near genes chr3L 12957283 intergenic not near genes chr3L 12957466 intergenic not near genes chr3L_6_12955001 chr3L_12955001 RAL-405 1510 chr3L 12957116 12957124 chr3L 12957442 12957477 4 343 3.0 4.0 3.5 0.9 361 chr3L 12957116 intergenic not near genes chr3L 12957296 intergenic not near genes chr3L 12957477 intergenic not near genes chr3L_4_12955001 chr3L_12955001 RAL-405 1511 chr3L 12957768 12957811 chr3L 12962270 12962313 copia 15 4497 7.5 6.5 7.0 1.9 4545 chr3L 12957768 intergenic not near genes chr3L 12960040 intergenic not near genes chr3L 12962313 intergenic not near genes chr3L_15_12960001 chr3L_12960001 RAL-405 1512 chr3L 12984226 12984269 chr3L 12984563 12984601 10 333 7.0 3.5 5.2 1.6 375 chr3L 12984226 intergenic not near genes chr3L 12984414 intergenic not near genes chr3L 12984601 intergenic not near genes chr3L_10_12980001 chr3L_12980001 RAL-405 1513 chr3L 13017903 13017915 chr3L 13018005 13018017 6 102 3.5 7.5 5.5 0.9 114 chr3L 13017903 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017960 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018017 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_6_13015001 chr3L_13015001 RAL-405 1514 chr3L 13093808 13093856 chr3L 13093904 13093915 5 84 3.0 2.0 2.5 1.4 107 chr3L 13093808 intergenic not near genes chr3L 13093862 intergenic not near genes chr3L 13093915 intergenic not near genes chr3L_5_13090001 chr3L_13090001 RAL-405 1515 chr3L 13159271 13159296 chr3L 13159370 13159380 4 95 2.5 0.0 1.2 1.8 109 chr3L 13159271 intergenic not near genes chr3L 13159326 intergenic not near genes chr3L 13159380 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-405 1516 chr3L 13194095 13194099 chr3L 13194162 13194193 4 90 2.0 6.5 4.2 0.8 98 chr3L 13194095 intergenic not near genes chr3L 13194144 intergenic not near genes chr3L 13194193 intergenic not near genes chr3L_4_13190001 chr3L_13190001 RAL-405 1517 chr3L 13267281 13267285 chr3L 13267414 13267418 5 133 8.0 5.0 6.5 0.7 137 chr3L 13267281 intron caps + chr3L 13267350 intron caps + chr3L 13267418 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-405 1518 chr3L 13267291 13267314 chr3L 13267403 13267437 4 124 2.0 3.5 2.8 1.1 146 chr3L 13267291 intron caps + chr3L 13267364 intron caps + chr3L 13267437 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-405 1519 chr3L 13314580 13314605 chr3L 13314683 13314703 8 98 6.0 1.5 3.8 1.7 123 chr3L 13314580 intergenic not near genes chr3L 13314642 intergenic not near genes chr3L 13314703 intergenic not near genes chr3L_8_13310001 chr3L_13310001 RAL-405 1520 chr3L 13320598 13320638 chr3L 13320698 13320731 8 101 3.5 2.0 2.8 2.1 133 chr3L 13320598 intergenic not near genes chr3L 13320664 intergenic not near genes chr3L 13320731 intergenic not near genes chr3L_8_13320001 chr3L_13320001 RAL-405 1521 chr3L 13477008 13477035 chr3L 13477090 13477132 15 87 0.0 1.5 0.8 8.3 124 chr3L 13477008 intergenic not near genes chr3L 13477070 intergenic stv + chr3L 13477132 intergenic stv + chr3L_15_13475001 chr3L_13475001 RAL-405 1522 chr3L 13525147 13525179 chr3L 13532956 13532983 roo 9 7808 8.0 8.5 8.2 1.0 7836 chr3L 13525147 intergenic not near genes chr3L 13529065 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-405 1523 chr3L 13545112 13545146 chr3L 13545309 13545343 6 192 6.5 3.0 4.8 1.0 231 chr3L 13545112 intron bru-3 - chr3L 13545228 intron bru-3 - chr3L 13545343 intron bru-3 - chr3L_6_13545001 chr3L_13545001 RAL-405 1524 chr3L 13677515 13677530 chr3L 13677611 13677627 6 97 5.0 9.0 7.0 0.8 112 chr3L 13677515 intron bru-3 - chr3L 13677571 intron bru-3 - chr3L 13677627 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-405 1525 chr3L 13677532 13677740 chr3L 13677610 13677907 13 101 0.0 8.5 4.2 2.5 375 chr3L 13677532 intron bru-3 - chr3L 13677720 intron bru-3 - chr3L 13677907 intron bru-3 - chr3L_13_13675001 chr3L_13675001 RAL-405 1526 chr3L 13740026 13740052 chr3L 13740125 13740153 6 104 1.0 3.0 2.0 2.0 127 chr3L 13740026 intron bru-3 - chr3L 13740090 intron bru-3 - chr3L 13740153 intron bru-3 - chr3L_6_13740001 chr3L_13740001 RAL-405 1527 chr3L 13804532 13804569 chr3L 13822833 13822862 roo 10 18295 5.0 4.0 4.5 1.8 18330 chr3L 13804532 intergenic not near genes chr3L 13813697 intergenic not near genes chr3L 13822862 intergenic not near genes chr3L_10_13810001 chr3L_13810001 RAL-405 1528 chr3L 13884367 13884377 chr3L 13884473 13884488 7 110 8.5 8.5 8.5 0.7 121 chr3L 13884367 intron dysc - chr3L 13884428 intron dysc - chr3L 13884488 intron dysc - chr3L_7_13880001 chr3L_13880001 RAL-405 1529 chr3L 13901554 13901595 chr3L 13901648 13901680 8 92 5.0 1.0 3.0 2.0 126 chr3L 13901554 intron dysc - chr3L 13901617 intron dysc - chr3L 13901680 intron dysc - chr3L_8_13900001 chr3L_13900001 RAL-405 1530 chr3L 13931312 13931370 chr3L 13931437 13931495 13 122 0.0 3.5 1.8 4.6 183 chr3L 13931312 intron Gl + chr3L 13931404 intron Gl + chr3L 13931495 intron Gl + chr3L_13_13930001 chr3L_13930001 RAL-405 1531 chr3L 14063050 14063085 chr3L 14063326 14063374 14 283 4.0 4.0 4.0 2.8 324 chr3L 14063050 intron CG32138 + chr3L 14063212 intron CG32138 + chr3L 14063374 intron CG32138 + chr3L_14_14060001 chr3L_14060001 RAL-405 1532 chr3L 14141393 14141412 chr3L 14141500 14141519 8 107 4.5 0.0 2.2 2.5 126 chr3L 14141393 intergenic not near genes chr3L 14141456 intergenic not near genes chr3L 14141519 intergenic not near genes chr3L_8_14140001 chr3L_14140001 RAL-405 1533 chr3L 14165170 14165211 chr3L 14165268 14165309 10 96 10.0 2.5 6.2 1.4 139 chr3L 14165170 intergenic not near genes chr3L 14165240 intergenic not near genes chr3L 14165309 intergenic not near genes chr3L_10_14165001 chr3L_14165001 RAL-405 1534 chr3L 14175345 14175376 chr3L 14175503 14175528 14 163 8.5 1.5 5.0 2.3 183 chr3L 14175345 intergenic D - chr3L 14175436 intergenic D - chr3L 14175528 intergenic D - chr3L_14_14175001 chr3L_14175001 RAL-405 1535 chr3L 14194705 14194737 chr3L 14194801 14194833 12 94 7.0 6.0 6.5 1.6 128 chr3L 14194705 intron nuf + chr3L 14194769 intron nuf + chr3L 14194833 intron nuf + chr3L_12_14190001 chr3L_14190001 RAL-405 1536 chr3L 14199321 14199372 chr3L 14199432 14199483 14 109 4.5 3.5 4.0 2.8 162 chr3L 14199321 intron nuf + chr3L 14199402 intron nuf + chr3L 14199483 intron nuf + chr3L_14_14195001 chr3L_14195001 RAL-405 1537 chr3L 14209285 14209326 chr3L 14209389 14209430 18 102 5.0 7.0 6.0 2.6 145 chr3L 14209285 intron nuf + chr3L 14209358 intron nuf + chr3L 14209430 intron nuf + chr3L_18_14205001 chr3L_14205001 RAL-405 1538 chr3L 14211421 14211464 chr3L 14211519 14211557 20 95 7.0 6.0 6.5 2.7 136 chr3L 14211421 intron nuf + chr3L 14211489 intron nuf + chr3L 14211557 intron nuf + chr3L_20_14210001 chr3L_14210001 RAL-405 1539 chr3L 14215039 14215089 chr3L 14215139 14215177 13 94 1.0 2.5 1.8 4.6 138 chr3L 14215039 intron nuf + chr3L 14215108 intron nuf + chr3L 14215177 intron nuf + chr3L_13_14215001 chr3L_14215001 RAL-405 1540 chr3L 14245573 14245591 chr3L 14245661 14245705 1360 6 106 4.0 7.0 5.5 0.9 132 chr3L 14245573 3` UTR CR44561 - chr3L 14245639 3` UTR CR44561 - chr3L 14245705 intergenic CR44561 -,CR44560 + chr3L_6_14245001 chr3L_14245001 RAL-405 1541 chr3L 14267359 14267392 chr3L 14271813 14271840 F-element 12 4454 7.0 9.5 8.2 1.3 4481 chr3L 14267359 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271840 intergenic not near genes chr3L_12_14265001 chr3L_14265001 RAL-405 1542 chr3L 14267393 14267397 chr3L 14271806 14271841 F-element 6 4437 6.0 8.5 7.2 0.7 4448 chr3L 14267393 intergenic not near genes chr3L 14269617 intergenic not near genes chr3L 14271841 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-405 1543 chr3L 14295983 14296013 chr3L 14296474 14296504 roo 8 497 0.5 8.0 4.2 1.5 521 chr3L 14295983 intron fz + chr3L 14296244 intron fz + chr3L 14296504 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-405 1544 chr3L 14312029 14312049 chr3L 14316863 14316880 X-element 4 4829 2.0 3.0 2.5 1.1 4851 chr3L 14312029 exon fz + chr3L 14314454 intron fz + chr3L 14316880 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-405 1545 chr3L 14331475 14331488 chr3L 14331542 14331586 5 84 2.0 0.0 1.0 2.5 111 chr3L 14331475 intron fz + chr3L 14331530 intron fz + chr3L 14331586 intron fz + chr3L_5_14330001 chr3L_14330001 RAL-405 1546 chr3L 14338281 14338323 chr3L 14338397 14338439 11 113 2.0 3.0 2.5 3.1 158 chr3L 14338281 intron fz + chr3L 14338360 intron fz + chr3L 14338439 intron fz + chr3L_11_14335001 chr3L_14335001 RAL-405 1547 chr3L 14341397 14341439 chr3L 14341547 14341594 6 147 0.0 0.5 0.2 5.0 197 chr3L 14341397 intron fz + chr3L 14341496 intron fz + chr3L 14341594 intron fz + chr3L_6_14340001 chr3L_14340001 RAL-405 1548 chr3L 14356498 14356549 chr3L 14356598 14356649 9 91 4.5 1.5 3.0 2.2 151 chr3L 14356498 intron fz + chr3L 14356574 intron fz + chr3L 14356649 intron fz + chr3L_9_14355001 chr3L_14355001 RAL-405 1549 chr3L 14365912 14365930 chr3L 14366034 14366041 6 120 8.0 1.0 4.5 1.1 129 chr3L 14365912 intron fz + chr3L 14365976 intron fz + chr3L 14366041 intron fz + chr3L_6_14365001 chr3L_14365001 RAL-405 1550 chr3L 14387454 14387488 chr3L 14388076 14388110 10 628 4.0 4.5 4.2 1.9 656 chr3L 14387454 intergenic not near genes chr3L 14387782 intergenic not near genes chr3L 14388110 intergenic not near genes chr3L_10_14385001 chr3L_14385001 RAL-405 1551 chr3L 14468428 14468443 chr3L 14473654 14473668 copia 5 5225 16.0 4.0 10.0 0.5 5240 chr3L 14468428 intron bbg - chr3L 14471048 intron bbg - chr3L 14473668 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-405 1552 chr3L 14468448 14468466 chr3L 14473650 14473692 copia 9 5220 10.0 4.0 7.0 1.1 5244 chr3L 14468448 intron bbg - chr3L 14471070 intron bbg - chr3L 14473692 intron bbg - chr3L_9_14470001 chr3L_14470001 RAL-405 1553 chr3L 14468468 14468477 chr3L 14473648 14473696 copia 11 5216 6.5 4.0 5.2 1.8 5228 chr3L 14468468 intron bbg - chr3L 14471082 intron bbg - chr3L 14473696 intron bbg - chr3L_11_14470001 chr3L_14470001 RAL-405 1554 chr3L 14486008 14486049 chr3L 14486100 14486133 7 91 2.5 3.5 3.0 1.8 125 chr3L 14486008 intron bbg - chr3L 14486070 intron bbg - chr3L 14486133 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-405 1555 chr3L 14522080 14522127 chr3L 14522198 14522246 25 117 4.0 5.0 4.5 4.5 166 chr3L 14522080 intron bbg - chr3L 14522163 intron bbg - chr3L 14522246 intron bbg - chr3L_25_14520001 chr3L_14520001 RAL-405 1556 chr3L 14565726 14565778 chr3L 14565836 14565879 18 108 3.0 1.5 2.2 5.6 153 chr3L 14565726 intergenic not near genes chr3L 14565802 intergenic not near genes chr3L 14565879 intergenic not near genes chr3L_18_14565001 chr3L_14565001 RAL-405 1557 chr3L 14596239 14596248 chr3L 14596355 14596364 4 116 0.0 18.5 9.2 0.4 125 chr3L 14596239 intron HGTX - chr3L 14596302 intron HGTX - chr3L 14596364 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-405 1558 chr3L 14715742 14715756 chr3L 14715844 14715863 5 104 7.0 2.0 4.5 0.9 121 chr3L 14715742 intron ome + chr3L 14715802 intron ome + chr3L 14715863 intron ome + chr3L_5_14715001 chr3L_14715001 RAL-405 1559 chr3L 14725588 14725604 chr3L 14728602 14728618 Doc 4 3014 9.5 6.0 7.8 0.5 3030 chr3L 14725588 intron ome + chr3L 14727103 intron ome + chr3L 14728618 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-405 1560 chr3L 14731327 14731343 chr3L 14731749 14731771 5 432 5.5 6.0 5.8 0.7 444 chr3L 14731327 intron ome + chr3L 14731549 intron ome + chr3L 14731771 intron ome + chr3L_5_14730001 chr3L_14730001 RAL-405 1561 chr3L 14820551 14820591 chr3L 14820649 14820694 12 99 3.5 0.0 1.8 4.3 143 chr3L 14820551 intron CG17839 + chr3L 14820622 intron CG17839 + chr3L 14820694 intron CG17839 + chr3L_12_14820001 chr3L_14820001 RAL-405 1562 chr3L 14825145 14825158 chr3L 14832892 14832897 Stalker2 6 7744 1.5 3.0 2.2 1.9 7752 chr3L 14825145 intron CG17839 + chr3L 14829021 intron CG17839 + chr3L 14832897 intron CG17839 + chr3L_6_14825001 chr3L_14825001 RAL-405 1563 chr3L 14839023 14839050 chr3L 14839132 14839159 16 107 4.5 10.5 7.5 1.9 136 chr3L 14839023 intron CG17839 + chr3L 14839091 intron CG17839 + chr3L 14839159 intron CG17839 + chr3L_16_14835001 chr3L_14835001 RAL-405 1564 chr3L 14912168 14912214 chr3L 14912270 14912316 13 99 1.5 2.0 1.8 4.6 148 chr3L 14912168 intron DCX-EMAP + chr3L 14912242 intron DCX-EMAP + chr3L 14912316 intron DCX-EMAP + chr3L_13_14910001 chr3L_14910001 RAL-405 1565 chr3L 14933428 14933450 chr3L 14933530 14933552 6 99 5.5 3.0 4.2 1.2 124 chr3L 14933428 intron DCX-EMAP + chr3L 14933490 intron DCX-EMAP + chr3L 14933552 intron DCX-EMAP + chr3L_6_14930001 chr3L_14930001 RAL-405 1566 chr3L 14970745 14970762 chr3L 14971075 14971092 F-element 5 328 12.0 4.0 8.0 0.6 347 chr3L 14970745 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971092 intergenic not near genes chr3L_5_14970001 chr3L_14970001 RAL-405 1567 chr3L 15035702 15035746 chr3L 15035798 15035852 15 104 3.5 3.0 3.2 3.6 150 chr3L 15035702 intron Sytbeta - chr3L 15035777 intron Sytbeta - chr3L 15035852 intron Sytbeta - chr3L_15_15035001 chr3L_15035001 RAL-405 1568 chr3L 15053397 15053445 chr3L 15053756 15053804 9 355 5.0 9.0 7.0 1.1 407 chr3L 15053397 intron Sytbeta - chr3L 15053600 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053804 intron,3` UTR Sytbeta -,CG18649 - chr3L_9_15050001 chr3L_15050001 RAL-405 1569 chr3L 15085028 15085078 chr3L 15086214 15086264 1360 8 1182 5.5 6.0 5.8 1.2 1236 chr3L 15085028 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086264 intron cp309 - chr3L_8_15085001 chr3L_15085001 RAL-405 1570 chr3L 15099244 15099258 chr3L 15099735 15099741 4 488 21.0 18.0 19.5 0.2 497 chr3L 15099244 intron,intron CTPsyn +,CR43973 - chr3L 15099492 intron,3` UTR CTPsyn +,CR43973 - chr3L 15099741 intron CTPsyn + chr3L_4_15095001 chr3L_15095001 RAL-405 1571 chr3L 15099239 15099257 chr3L 15099743 15099745 4 490 20.5 16.0 18.2 0.2 506 chr3L 15099239 intron,intron CTPsyn +,CR43973 - chr3L 15099492 intron,3` UTR CTPsyn +,CR43973 - chr3L 15099745 intron CTPsyn + chr3L_4_15095001 chr3L_15095001 RAL-405 1572 chr3L 15146144 15146173 chr3L 15146241 15146277 6 98 0.0 6.0 3.0 1.5 133 chr3L 15146144 3` UTR Pex3 + chr3L 15146210 3` UTR Pex3 + chr3L 15146277 3` UTR Pex3 + chr3L_6_15145001 chr3L_15145001 RAL-405 1573 chr3L 15219727 15219775 chr3L 15219829 15219877 9 101 3.0 5.0 4.0 1.8 150 chr3L 15219727 intergenic not near genes chr3L 15219802 intergenic not near genes chr3L 15219877 intergenic not near genes chr3L_9_15215001 chr3L_15215001 RAL-405 1574 chr3L 15232490 15232521 chr3L 15232591 15232612 9 97 6.5 7.0 6.8 1.2 122 chr3L 15232490 intergenic not near genes chr3L 15232551 intergenic not near genes chr3L 15232612 intergenic not near genes chr3L_9_15230001 chr3L_15230001 RAL-405 1575 chr3L 15295750 15295800 chr3L 15298613 15298657 gypsy5 11 2854 7.0 6.0 6.5 1.5 2907 chr3L 15295750 intergenic not near genes chr3L 15297204 intergenic not near genes chr3L 15298657 intergenic Best4 + chr3L_11_15295001 chr3L_15295001 RAL-405 1576 chr3L 15333129 15333169 chr3L 15333223 15333258 13 94 2.5 4.0 3.2 3.1 129 chr3L 15333129 intergenic CR43247 + chr3L 15333194 intergenic CR43247 + chr3L 15333258 intergenic CR43247 + chr3L_13_15330001 chr3L_15330001 RAL-405 1577 chr3L 15384936 15384988 chr3L 15385084 15385112 16 141 5.0 2.5 3.8 3.3 176 chr3L 15384936 intergenic not near genes chr3L 15385024 intergenic not near genes chr3L 15385112 intergenic not near genes chr3L_16_15385001 chr3L_15385001 RAL-405 1578 chr3L 15393643 15393692 chr3L 15393865 15393894 17 213 4.0 2.0 3.0 4.2 251 chr3L 15393643 intergenic not near genes chr3L 15393768 intergenic not near genes chr3L 15393894 intergenic not near genes chr3L_17_15390001 chr3L_15390001 RAL-405 1579 chr3L 15399829 15399870 chr3L 15399990 15399990 7 155 7.0 2.0 4.5 1.3 161 chr3L 15399829 intergenic not near genes chr3L 15399910 intergenic not near genes chr3L 15399990 intergenic not near genes chr3L_7_15395001 chr3L_15395001 RAL-405 1580 chr3L 15406000 15406048 chr3L 15406102 15406149 7 100 5.0 5.0 5.0 1.2 149 chr3L 15406000 intergenic not near genes chr3L 15406074 intergenic not near genes chr3L 15406149 intergenic not near genes chr3L_7_15405001 chr3L_15405001 RAL-405 1581 chr3L 15422481 15422512 chr3L 15422565 15422611 11 92 2.5 4.5 3.5 2.4 130 chr3L 15422481 intergenic not near genes chr3L 15422546 intergenic not near genes chr3L 15422611 intergenic not near genes chr3L_11_15420001 chr3L_15420001 RAL-405 1582 chr3L 15423759 15423782 chr3L 15426603 15426646 opus 16 2859 4.5 7.0 5.8 2.4 2887 chr3L 15423759 intergenic not near genes chr3L 15425202 intergenic not near genes chr3L 15426646 intergenic not near genes chr3L_16_15425001 chr3L_15425001 RAL-405 1583 chr3L 15466022 15466036 chr3L 15466124 15466138 11 102 5.5 0.0 2.8 2.9 116 chr3L 15466022 intergenic not near genes chr3L 15466080 intergenic not near genes chr3L 15466138 intergenic not near genes chr3L_11_15465001 chr3L_15465001 RAL-405 1584 chr3L 15466044 15466135 chr3L 15466121 15466251 6 110 0.0 0.0 0.0 6.0 207 chr3L 15466044 intergenic not near genes chr3L 15466148 intergenic not near genes chr3L 15466251 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-405 1585 chr3L 15466504 15466545 chr3L 15466608 15466649 5 96 1.0 4.5 2.8 1.3 145 chr3L 15466504 intergenic not near genes chr3L 15466576 intergenic not near genes chr3L 15466649 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-405 1586 chr3L 15482583 15482628 chr3L 15482684 15482729 10 93 2.5 3.0 2.8 2.6 146 chr3L 15482583 intergenic not near genes chr3L 15482656 intergenic not near genes chr3L 15482729 intergenic not near genes chr3L_10_15480001 chr3L_15480001 RAL-405 1587 chr3L 15511301 15511319 chr3L 15511386 15511411 8 94 6.0 4.0 5.0 1.3 110 chr3L 15511301 intron Eip71CD + chr3L 15511356 intron Eip71CD + chr3L 15511411 intron Eip71CD + chr3L_8_15510001 chr3L_15510001 RAL-405 1588 chr3L 15533104 15533159 chr3L 15533206 15533236 17 96 2.5 7.0 4.8 2.9 132 chr3L 15533104 intergenic not near genes chr3L 15533170 intergenic not near genes chr3L 15533236 intergenic not near genes chr3L_17_15530001 chr3L_15530001 RAL-405 1589 chr3L 15633179 15633194 chr3L 15633269 15633294 4 94 9.0 3.0 6.0 0.6 115 chr3L 15633179 intron comm3 - chr3L 15633236 intron comm3 - chr3L 15633294 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-405 1590 chr3L 15633206 15633213 chr3L 15633291 15633313 4 96 3.5 8.5 6.0 0.6 107 chr3L 15633206 intron comm3 - chr3L 15633260 intron comm3 - chr3L 15633313 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-405 1591 chr3L 15642745 15642751 chr3L 15642867 15642868 4 122 11.5 9.5 10.5 0.3 123 chr3L 15642745 intron comm3 - chr3L 15642806 intron comm3 - chr3L 15642868 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-405 1592 chr3L 15642757 15642788 chr3L 15642864 15642904 9 123 4.5 8.5 6.5 1.2 147 chr3L 15642757 intron comm3 - chr3L 15642830 intron comm3 - chr3L 15642904 intron comm3 - chr3L_9_15640001 chr3L_15640001 RAL-405 1593 chr3L 15713052 15713069 chr3L 15713189 15713237 4 156 2.0 3.5 2.8 1.1 185 chr3L 15713052 intergenic not near genes chr3L 15713144 intergenic not near genes chr3L 15713237 intergenic not near genes chr3L_4_15710001 chr3L_15710001 RAL-405 1594 chr3L 15781635 15781672 chr3L 15781786 15781841 4 160 0.0 0.0 0.0 4.0 206 chr3L 15781635 intergenic not near genes chr3L 15781738 intergenic not near genes chr3L 15781841 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-405 1595 chr3L 15882541 15882552 chr3L 15882636 15882648 5 96 13.5 1.0 7.2 0.6 107 chr3L 15882541 intron pHCl - chr3L 15882594 intron pHCl - chr3L 15882648 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-405 1596 chr3L 15882562 15882582 chr3L 15882625 15882628 7 71 6.5 1.0 3.8 1.5 66 chr3L 15882562 intron pHCl - chr3L 15882595 intron pHCl - chr3L 15882628 intron pHCl - chr3L_7_15880001 chr3L_15880001 RAL-405 1597 chr3L 15883171 15883221 chr3L 15883482 15883517 19 308 5.5 1.5 3.5 4.2 346 chr3L 15883171 intron pHCl - chr3L 15883344 intron pHCl - chr3L 15883517 intron pHCl - chr3L_19_15880001 chr3L_15880001 RAL-405 1598 chr3L 15946485 15946495 chr3L 15946591 15946601 7 104 14.0 0.0 7.0 0.9 116 chr3L 15946485 intron Pka-C3 - chr3L 15946543 intron Pka-C3 - chr3L 15946601 intron Pka-C3 - chr3L_7_15945001 chr3L_15945001 RAL-405 1599 chr3L 16010756 16010798 chr3L 16010853 16010890 14 95 6.5 10.0 8.2 1.5 134 chr3L 16010756 intron mib1 - chr3L 16010823 intron mib1 - chr3L 16010890 intron mib1 - chr3L_14_16010001 chr3L_16010001 RAL-405 1600 chr3L 16060474 16060507 chr3L 16060623 16060666 7 155 3.0 5.5 4.2 1.3 192 chr3L 16060474 intron Mbs + chr3L 16060570 intron Mbs + chr3L 16060666 intron Mbs + chr3L_7_16060001 chr3L_16060001 RAL-405 1601 chr3L 16184091 16184137 chr3L 16188930 16188946 X-element 24 4832 9.0 5.0 7.0 3.0 4855 chr3L 16184091 intergenic not near genes chr3L 16186518 intergenic not near genes chr3L 16188946 intergenic not near genes chr3L_24_16185001 chr3L_16185001 RAL-405 1602 chr3L 16234983 16235033 chr3L 16235091 16235141 11 105 8.5 7.0 7.8 1.2 158 chr3L 16234983 exon l(3)72Dp + chr3L 16235062 intron l(3)72Dp + chr3L 16235141 intron l(3)72Dp + chr3L_11_16235001 chr3L_16235001 RAL-405 1603 chr3L 16243650 16243677 chr3L 16243761 16243788 8 108 0.5 4.0 2.2 2.5 138 chr3L 16243650 intergenic not near genes chr3L 16243719 intergenic not near genes chr3L 16243788 intergenic not near genes chr3L_8_16240001 chr3L_16240001 RAL-405 1604 chr3L 16258378 16258416 chr3L 16258472 16258496 4 95 2.5 2.0 2.2 1.2 118 chr3L 16258378 intergenic not near genes chr3L 16258437 intergenic not near genes chr3L 16258496 intergenic not near genes chr3L_4_16255001 chr3L_16255001 RAL-405 1605 chr3L 16304870 16304880 chr3L 16304948 16304978 5 94 3.0 8.0 5.5 0.8 108 chr3L 16304870 intergenic CG43249 +,CG13043 - chr3L 16304924 intergenic CG43249 +,CG13043 - chr3L 16304978 intergenic CG13043 -,CG43249 + chr3L_5_16300001 chr3L_16300001 RAL-405 1606 chr3L 16322803 16322855 chr3L 16322913 16322953 9 94 5.5 3.0 4.2 1.7 150 chr3L 16322803 intergenic not near genes chr3L 16322878 intergenic not near genes chr3L 16322953 intergenic not near genes chr3L_9_16320001 chr3L_16320001 RAL-405 1607 chr3L 16333027 16333070 chr3L 16333123 16333132 9 91 3.0 4.0 3.5 2.0 105 chr3L 16333027 intergenic retinin +,CG13056 + chr3L 16333080 intergenic CG13056 +,retinin + chr3L 16333132 intergenic CG13056 +,retinin + chr3L_9_16330001 chr3L_16330001 RAL-405 1608 chr3L 16443871 16443878 chr3L 16446195 16446198 Doc 5 2343 0.5 4.5 2.5 1.4 2327 chr3L 16443871 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446198 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 RAL-405 1609 chr3L 16450003 16450025 chr3L 16450108 16450130 11 104 1.5 3.0 2.2 3.4 127 chr3L 16450003 intron,intron CG33158 +,dsx-c73A - chr3L 16450066 intron,intron CG33158 +,dsx-c73A - chr3L 16450130 intron,intron CG33158 +,dsx-c73A - chr3L_11_16450001 chr3L_16450001 RAL-405 1610 chr3L 16450026 16450042 chr3L 16450105 16450147 9 100 1.5 3.0 2.2 2.8 121 chr3L 16450026 intron,intron CG33158 +,dsx-c73A - chr3L 16450086 intron,intron CG33158 +,dsx-c73A - chr3L 16450147 intron,exon CG33158 +,dsx-c73A - chr3L_9_16450001 chr3L_16450001 RAL-405 1611 chr3L 16493975 16494009 chr3L 16494495 16494510 jockey 5 514 6.0 3.0 4.5 0.9 535 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494242 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494510 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-405 1612 chr3L 16533543 16533587 chr3L 16533674 16533717 10 129 5.5 2.5 4.0 2.0 174 chr3L 16533543 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533717 intron CG43373 - chr3L_10_16530001 chr3L_16530001 RAL-405 1613 chr3L 16540042 16540065 chr3L 16540141 16540173 13 106 9.5 2.0 5.8 1.9 131 chr3L 16540042 intron CG43373 - chr3L 16540108 intron CG43373 - chr3L 16540173 intron CG43373 - chr3L_13_16540001 chr3L_16540001 RAL-405 1614 chr3L 16616492 16616517 chr3L 16621840 16621865 297 7 5345 13.5 4.5 9.0 0.7 5373 chr3L 16616492 3` UTR Abl - chr3L 16619178 3` UTR Abl - chr3L 16621865 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-405 1615 chr3L 16633258 16633305 chr3L 16633424 16633430 6 153 3.5 2.0 2.8 1.6 172 chr3L 16633258 intron Abl - chr3L 16633344 intron Abl - chr3L 16633430 intron Abl - chr3L_6_16630001 chr3L_16630001 RAL-405 1616 chr3L 16681849 16681870 chr3L 16681960 16681981 6 110 5.5 8.0 6.8 0.8 132 chr3L 16681849 intron,intron Lasp -,CG43954 - chr3L 16681915 intron,intron Lasp -,CG43954 - chr3L 16681981 intron,intron Lasp -,CG43954 - chr3L_6_16680001 chr3L_16680001 RAL-405 1617 chr3L 16684004 16684041 chr3L 16689245 16689282 copia 10 5239 4.5 4.0 4.2 1.9 5278 chr3L 16684004 intron,intron Lasp -,CG43954 - chr3L 16686643 intron,intron Lasp -,CG43954 - chr3L 16689282 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_10_16685001 chr3L_16685001 RAL-405 1618 chr3L 16714823 16714869 chr3L 16714927 16714968 23 101 7.5 4.5 6.0 3.3 145 chr3L 16714823 intron Dab + chr3L 16714896 intron Dab + chr3L 16714968 intron Dab + chr3L_23_16710001 chr3L_16710001 RAL-405 1619 chr3L 16786981 16786995 chr3L 16787052 16787091 6 78 0.5 6.0 3.2 1.4 110 chr3L 16786981 intergenic Int6 - chr3L 16787036 intergenic Int6 - chr3L 16787091 intergenic Int6 -,CG9674 - chr3L_6_16785001 chr3L_16785001 RAL-405 1620 chr3L 16808022 16808074 chr3L 16808118 16808173 14 87 2.0 0.5 1.2 6.4 151 chr3L 16808022 intron nudC + chr3L 16808098 intron nudC + chr3L 16808173 intron nudC + chr3L_14_16805001 chr3L_16805001 RAL-405 1621 chr3L 16817866 16817907 chr3L 16818022 16818057 8 145 1.5 4.5 3.0 2.0 191 chr3L 16817866 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818057 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-405 1622 chr3L 16818727 16818779 chr3L 16818823 16818860 19 93 6.0 4.0 5.0 3.2 133 chr3L 16818727 intron,intron nudC +,CG13024 - chr3L 16818794 intron,intron nudC +,CG13024 - chr3L 16818860 intron,intron nudC +,CG13024 - chr3L_19_16815001 chr3L_16815001 RAL-405 1623 chr3L 16845005 16845044 chr3L 16845137 16845177 9 132 2.0 10.5 6.2 1.2 172 chr3L 16845005 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845091 intergenic CG9669 -,CG9715 + chr3L 16845177 intergenic CG9669 -,CG9715 + chr3L_9_16845001 chr3L_16845001 RAL-405 1624 chr3L 16866189 16866243 chr3L 16866300 16866353 16 108 5.5 1.0 3.2 3.8 164 chr3L 16866189 intron Lmpt + chr3L 16866271 intron Lmpt + chr3L 16866353 intron Lmpt + chr3L_16_16865001 chr3L_16865001 RAL-405 1625 chr3L 16869566 16869591 chr3L 16869665 16869689 10 100 7.0 5.0 6.0 1.4 123 chr3L 16869566 intron Lmpt + chr3L 16869628 intron Lmpt + chr3L 16869689 intron Lmpt + chr3L_10_16865001 chr3L_16865001 RAL-405 1626 chr3L 16870870 16870895 chr3L 16870956 16871006 12 105 3.5 2.5 3.0 3.0 136 chr3L 16870870 intron Lmpt + chr3L 16870938 intron Lmpt + chr3L 16871006 intron Lmpt + chr3L_12_16870001 chr3L_16870001 RAL-405 1627 chr3L 16941383 16941411 chr3L 16941504 16941532 8 120 3.0 0.0 1.5 3.2 149 chr3L 16941383 intron Cpr73D - chr3L 16941458 intron Cpr73D - chr3L 16941532 intron Cpr73D - chr3L_8_16940001 chr3L_16940001 RAL-405 1628 chr3L 16945735 16945760 chr3L 16954878 16954891 roo 7 9146 0.5 2.0 1.2 3.2 9156 chr3L 16945735 exon Obp73a + chr3L 16950313 intergenic not near genes chr3L 16954891 5` UTR Nc73EF + chr3L_7_16950001 chr3L_16950001 RAL-405 1629 chr3L 16973359 16973376 chr3L 23583082 23583099 4 6609723 8.0 14.0 11.0 0.3 6609740 chr3L 16973359 intron Exn + chr3L 20278229 exon gogo - chr3L 23583099 intron AGO3 + chr3L_4_20275001 chr3L_20275001 RAL-405 1630 chr3L 16973702 16973729 chr3L 16973800 16973808 4 91 3.5 2.0 2.8 1.1 106 chr3L 16973702 intron Exn + chr3L 16973755 intron Exn + chr3L 16973808 intron Exn + chr3L_4_16970001 chr3L_16970001 RAL-405 1631 chr3L 17034914 17034960 chr3L 17035122 17035168 G2 17 198 4.5 3.0 3.8 3.5 254 chr3L 17034914 intergenic not near genes chr3L 17035041 intergenic not near genes chr3L 17035168 intergenic beg + chr3L_17_17035001 chr3L_17035001 RAL-405 1632 chr3L 17052572 17052622 chr3L 17052695 17052745 25 121 3.0 5.0 4.0 5.0 173 chr3L 17052572 intron rogdi + chr3L 17052658 intron rogdi + chr3L 17052745 exon rogdi + chr3L_25_17050001 chr3L_17050001 RAL-405 1633 chr3L 17084984 17084999 chr3L 17094153 17094168 roo 6 9169 16.0 6.5 11.2 0.5 9184 chr3L 17084984 intron Rbp6 - chr3L 17089576 intron Rbp6 - chr3L 17094168 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-405 1634 chr3L 17085003 17085033 chr3L 17094152 17094202 roo 11 9165 7.0 6.5 6.8 1.4 9199 chr3L 17085003 intron Rbp6 - chr3L 17089602 intron Rbp6 - chr3L 17094202 intron Rbp6 - chr3L_11_17085001 chr3L_17085001 RAL-405 1635 chr3L 17118986 17119007 chr3L 17119082 17119103 5 96 3.5 3.5 3.5 1.1 117 chr3L 17118986 intron Rbp6 - chr3L 17119044 intron Rbp6 - chr3L 17119103 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-405 1636 chr3L 17120639 17120684 chr3L 17120730 17120780 21 93 5.5 5.0 5.2 3.4 141 chr3L 17120639 intron Rbp6 - chr3L 17120710 intron Rbp6 - chr3L 17120780 intron Rbp6 - chr3L_21_17120001 chr3L_17120001 RAL-405 1637 chr3L 17149148 17149191 chr3L 17149244 17149251 8 91 5.5 0.0 2.8 2.1 103 chr3L 17149148 intron Rbp6 - chr3L 17149200 intron Rbp6 - chr3L 17149251 intron Rbp6 - chr3L_8_17145001 chr3L_17145001 RAL-405 1638 chr3L 17217242 17217283 chr3L 17217337 17217383 10 98 3.0 7.5 5.2 1.6 141 chr3L 17217242 intron Rbp6 - chr3L 17217312 intron Rbp6 - chr3L 17217383 intron Rbp6 - chr3L_10_17215001 chr3L_17215001 RAL-405 1639 chr3L 17272248 17272266 chr3L 17272396 17272414 4 145 0.5 3.0 1.8 1.4 166 chr3L 17272248 intergenic not near genes chr3L 17272331 intergenic not near genes chr3L 17272414 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-405 1640 chr3L 17331046 17331059 chr3L 17331156 17331169 9 109 7.0 6.0 6.5 1.2 123 chr3L 17331046 intergenic not near genes chr3L 17331108 intergenic not near genes chr3L 17331169 intergenic not near genes chr3L_9_17330001 chr3L_17330001 RAL-405 1641 chr3L 17331062 17331093 chr3L 17331152 17331203 9 99 2.5 6.0 4.2 1.7 141 chr3L 17331062 intergenic not near genes chr3L 17331132 intergenic not near genes chr3L 17331203 intergenic not near genes chr3L_9_17330001 chr3L_17330001 RAL-405 1642 chr3L 17344635 17344645 chr3L 17344725 17344740 9 98 6.5 7.5 7.0 1.1 105 chr3L 17344635 exon brv2 - chr3L 17344688 5` UTR brv2 - chr3L 17344740 intergenic brv2 -,Mip - chr3L_9_17340001 chr3L_17340001 RAL-405 1643 chr3L 17344646 17344656 chr3L 17344723 17344759 6 98 4.5 6.5 5.5 0.9 113 chr3L 17344646 exon brv2 - chr3L 17344702 intergenic brv2 -,Mip - chr3L 17344759 intergenic brv2 -,Mip - chr3L_6_17340001 chr3L_17340001 RAL-405 1644 chr3L 17367415 17367460 chr3L 17367529 17367574 14 112 4.5 4.5 4.5 2.5 159 chr3L 17367415 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367574 intergenic Cad74A -,CR45688 + chr3L_14_17365001 chr3L_17365001 RAL-405 1645 chr3L 17498082 17498111 chr3L 17498179 17498203 9 94 0.5 2.0 1.2 4.1 121 chr3L 17498082 intron Oatp74D + chr3L 17498142 intron Oatp74D + chr3L 17498203 intron Oatp74D + chr3L_9_17495001 chr3L_17495001 RAL-405 1646 chr3L 17510734 17510753 chr3L 17510834 17510857 4 102 1.5 1.5 1.5 1.6 123 chr3L 17510734 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510857 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-405 1647 chr3L 17516982 17517005 chr3L 17524540 17524553 412 7 7562 9.0 2.5 5.8 1.0 7571 chr3L 17516982 intron CG7564 + chr3L 17520768 intron CG7564 + chr3L 17524553 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-405 1648 chr3L 17578521 17578568 chr3L 17578642 17578690 13 114 4.0 0.0 2.0 4.3 169 chr3L 17578521 intron Eip74EF - chr3L 17578606 intron Eip74EF - chr3L 17578690 intron Eip74EF - chr3L_13_17575001 chr3L_17575001 RAL-405 1649 chr3L 17594227 17594274 chr3L 17594328 17594375 15 95 4.5 9.0 6.8 1.9 148 chr3L 17594227 intron Eip74EF - chr3L 17594301 intron Eip74EF - chr3L 17594375 intron Eip74EF - chr3L_15_17590001 chr3L_17590001 RAL-405 1650 chr3L 17595182 17595200 chr3L 17595325 17595343 8 142 3.0 4.5 3.8 1.7 161 chr3L 17595182 intron Eip74EF - chr3L 17595262 intron Eip74EF - chr3L 17595343 intron Eip74EF - chr3L_8_17595001 chr3L_17595001 RAL-405 1651 chr3L 17645284 17645336 chr3L 17645381 17645428 7 90 2.5 8.5 5.5 1.1 144 chr3L 17645284 intergenic CG43085 -,Pep - chr3L 17645356 intergenic CG43085 -,Pep - chr3L 17645428 intergenic CG43085 -,Pep - chr3L_7_17645001 chr3L_17645001 RAL-405 1652 chr3L 17730834 17730880 chr3L 17738179 17738214 mdg1 21 7344 6.0 4.5 5.2 3.4 7380 chr3L 17730834 intron Ccn + chr3L 17734524 intron Ccn + chr3L 17738214 intron Ccn + chr3L_21_17730001 chr3L_17730001 RAL-405 1653 chr3L 17790434 17790609 chr3L 17790595 17790893 13 194 1.5 1.5 1.5 5.2 459 chr3L 17790434 intergenic not near genes chr3L 17790664 intergenic CG42815 - chr3L 17790893 intergenic CG42815 - chr3L_13_17790001 chr3L_17790001 RAL-405 1654 chr3L 17790615 17790634 chr3L 17790889 17790919 5 283 0.5 8.5 4.5 0.9 304 chr3L 17790615 intergenic CG42815 - chr3L 17790767 intergenic CG42815 - chr3L 17790919 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-405 1655 chr3L 17799792 17799838 chr3L 17801599 17801645 S-element 15 1802 4.5 6.5 5.5 2.3 1853 chr3L 17799792 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801645 intron NUCB1 - chr3L_15_17800001 chr3L_17800001 RAL-405 1656 chr3L 17834322 17834346 chr3L 17834490 17834530 10 174 5.5 5.5 5.5 1.5 208 chr3L 17834322 intron Grd + chr3L 17834426 intron Grd + chr3L 17834530 intron Grd + chr3L_10_17830001 chr3L_17830001 RAL-405 1657 chr3L 17918368 17918384 chr3L 17921188 17921207 opus 5 2821 2.0 5.0 3.5 1.1 2839 chr3L 17918368 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-405 1658 chr3L 17991559 17991589 chr3L 17991652 17991687 10 96 7.0 5.0 6.0 1.4 128 chr3L 17991559 intron Eip75B - chr3L 17991623 intron Eip75B - chr3L 17991687 intron Eip75B - chr3L_10_17990001 chr3L_17990001 RAL-405 1659 chr3L 18006201 18006251 chr3L 18006345 18006387 16 143 7.5 1.5 4.5 2.9 186 chr3L 18006201 intron Eip75B - chr3L 18006294 intron Eip75B - chr3L 18006387 intron Eip75B - chr3L_16_18005001 chr3L_18005001 RAL-405 1660 chr3L 18013951 18013957 chr3L 18014060 18014066 4 108 16.0 0.0 8.0 0.4 115 chr3L 18013951 intron Eip75B - chr3L 18014008 intron Eip75B - chr3L 18014066 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-405 1661 chr3L 18026273 18026313 chr3L 18026376 18026416 21 104 7.5 8.5 8.0 2.3 143 chr3L 18026273 intron Eip75B - chr3L 18026344 intron Eip75B - chr3L 18026416 intron Eip75B - chr3L_21_18025001 chr3L_18025001 RAL-405 1662 chr3L 18029941 18029976 chr3L 18030038 18030053 12 93 4.5 0.0 2.2 3.8 112 chr3L 18029941 intron Eip75B - chr3L 18029997 intron Eip75B - chr3L 18030053 intron Eip75B - chr3L_12_18030001 chr3L_18030001 RAL-405 1663 chr3L 18042488 18042517 chr3L 18042586 18042610 8 97 1.5 4.5 3.0 2.0 122 chr3L 18042488 intron Eip75B - chr3L 18042549 intron Eip75B - chr3L 18042610 intron Eip75B - chr3L_8_18040001 chr3L_18040001 RAL-405 1664 chr3L 18045008 18045045 chr3L 18045093 18045140 11 90 3.0 7.5 5.2 1.8 132 chr3L 18045008 intron Eip75B - chr3L 18045074 intron Eip75B - chr3L 18045140 intron Eip75B - chr3L_11_18045001 chr3L_18045001 RAL-405 1665 chr3L 18047687 18047740 chr3L 18056763 18056807 roo 19 9074 5.5 4.0 4.8 3.3 9120 chr3L 18047687 intron Eip75B - chr3L 18052247 intron Eip75B - chr3L 18056807 intron Eip75B - chr3L_19_18050001 chr3L_18050001 RAL-405 1666 chr3L 18057955 18058005 chr3L 18058076 18058116 7 118 6.5 1.5 4.0 1.4 161 chr3L 18057955 intron Eip75B - chr3L 18058036 intron Eip75B - chr3L 18058116 intron Eip75B - chr3L_7_18055001 chr3L_18055001 RAL-405 1667 chr3L 18066812 18066826 chr3L 18066958 18066972 4 144 5.5 6.0 5.8 0.6 160 chr3L 18066812 intergenic not near genes chr3L 18066892 intergenic not near genes chr3L 18066972 intergenic not near genes chr3L_4_18065001 chr3L_18065001 RAL-405 1668 chr3L 18066829 18066864 chr3L 18066957 18066969 15 138 3.0 6.0 4.5 2.7 140 chr3L 18066829 intergenic not near genes chr3L 18066899 intergenic not near genes chr3L 18066969 intergenic not near genes chr3L_15_18065001 chr3L_18065001 RAL-405 1669 chr3L 18068813 18068843 chr3L 18068937 18068967 6 124 11.0 4.5 7.8 0.7 154 chr3L 18068813 exon CG44006 - chr3L 18068890 intron CG44006 - chr3L 18068967 exon CG44006 - chr3L_6_18065001 chr3L_18065001 RAL-405 1670 chr3L 18068857 18068861 chr3L 18068945 18068945 4 102 4.5 5.5 5.0 0.7 88 chr3L 18068857 exon CG44006 - chr3L 18068901 intron CG44006 - chr3L 18068945 exon CG44006 - chr3L_4_18065001 chr3L_18065001 RAL-405 1671 chr3L 18081062 18081065 chr3L 18081108 18081153 6 64 6.0 3.0 4.5 1.1 91 chr3L 18081062 intergenic CR43253 - chr3L 18081108 intergenic CR43253 - chr3L 18081153 3` UTR CR43253 - chr3L_6_18080001 chr3L_18080001 RAL-405 1672 chr3L 18099115 18099123 chr3L 18099536 18099544 4 421 3.5 9.0 6.2 0.6 429 chr3L 18099115 intron CG13698 - chr3L 18099330 intron CG13698 - chr3L 18099544 intron CG13698 - chr3L_4_18095001 chr3L_18095001 RAL-405 1673 chr3L 18104338 18104382 chr3L 18104431 18104451 10 94 2.0 3.0 2.5 2.9 113 chr3L 18104338 intron CG13698 - chr3L 18104394 intron CG13698 - chr3L 18104451 intron CG13698 - chr3L_10_18100001 chr3L_18100001 RAL-405 1674 chr3L 18112831 18112876 chr3L 18112927 18112972 9 92 6.0 5.5 5.8 1.3 141 chr3L 18112831 3` UTR mus304 + chr3L 18112902 intergenic mus304 +,CG32195 +,CG7341 + chr3L 18112972 5` UTR,5` UTR CG32195 +,CG7341 + chr3L_9_18110001 chr3L_18110001 RAL-405 1675 chr3L 18118834 18118887 chr3L 18118930 18118932 16 86 6.5 3.0 4.8 2.8 98 chr3L 18118834 3` UTR,intron CG32195 +,CG7341 + chr3L 18118883 3` UTR,intron CG32195 +,CG7341 + chr3L 18118932 3` UTR,intron CG32195 +,CG7341 + chr3L_16_18115001 chr3L_18115001 RAL-405 1676 chr3L 18136668 18136685 chr3L 18136766 18136783 9 97 0.0 3.0 1.5 3.6 115 chr3L 18136668 intergenic CR44669 - chr3L 18136726 intergenic CR44669 - chr3L 18136783 intergenic not near genes chr3L_9_18135001 chr3L_18135001 RAL-405 1677 chr3L 18172672 18172692 chr3L 18172768 18172768 4 91 6.5 0.0 3.2 1.0 96 chr3L 18172672 intron W - chr3L 18172720 intron W - chr3L 18172768 intron W - chr3L_4_18170001 chr3L_18170001 RAL-405 1678 chr3L 18175801 18175839 chr3L 18176060 18176098 12 256 2.5 8.0 5.2 1.9 297 chr3L 18175801 intron W - chr3L 18175950 intron W - chr3L 18176098 intron W - chr3L_12_18175001 chr3L_18175001 RAL-405 1679 chr3L 18198929 18198931 chr3L 24821492 24821494 14 6622563 0.0 12.5 6.2 1.9 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_14_21510001 chr3L_21510001 RAL-405 1680 chr3L 18220221 18220228 chr3L 18220636 18220643 4 415 2.5 4.5 3.5 0.9 422 chr3L 18220221 intergenic not near genes chr3L 18220432 intergenic not near genes chr3L 18220643 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-405 1681 chr3L 18223153 18223186 chr3L 18223249 18223301 6 99 6.5 0.0 3.2 1.4 148 chr3L 18223153 intergenic not near genes chr3L 18223227 intergenic not near genes chr3L 18223301 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-405 1682 chr3L 18226661 18226667 chr3L 18226757 18226778 6 105 1.0 6.5 3.8 1.2 117 chr3L 18226661 intergenic not near genes chr3L 18226720 intergenic not near genes chr3L 18226778 intergenic not near genes chr3L_6_18225001 chr3L_18225001 RAL-405 1683 chr3L 18248947 18248983 chr3L 18249055 18249101 14 111 3.5 5.5 4.5 2.5 154 chr3L 18248947 intergenic not near genes chr3L 18249024 intergenic not near genes chr3L 18249101 intergenic not near genes chr3L_14_18245001 chr3L_18245001 RAL-405 1684 chr3L 18386876 18386880 chr3L 18386976 18386980 5 100 0.0 3.0 1.5 2.0 104 chr3L 18386876 intergenic not near genes chr3L 18386928 intergenic not near genes chr3L 18386980 intergenic not near genes chr3L_5_18385001 chr3L_18385001 RAL-405 1685 chr3L 18420055 18420096 chr3L 18420154 18420189 4 99 0.5 5.0 2.8 1.1 134 chr3L 18420055 intergenic not near genes chr3L 18420122 intergenic not near genes chr3L 18420189 intergenic not near genes chr3L_4_18420001 chr3L_18420001 RAL-405 1686 chr3L 18436060 18436090 chr3L 18436158 18436208 12 112 4.0 4.5 4.2 2.3 148 chr3L 18436060 intergenic not near genes chr3L 18436134 intergenic not near genes chr3L 18436208 intergenic not near genes chr3L_12_18435001 chr3L_18435001 RAL-405 1687 chr3L 18445239 18445270 chr3L 18445332 18445368 7 96 7.5 1.0 4.2 1.3 129 chr3L 18445239 intergenic not near genes chr3L 18445304 intergenic not near genes chr3L 18445368 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-405 1688 chr3L 18448595 18448621 chr3L 18448707 18448733 9 110 13.5 6.0 9.8 0.8 138 chr3L 18448595 intergenic not near genes chr3L 18448664 intergenic not near genes chr3L 18448733 intergenic not near genes chr3L_9_18445001 chr3L_18445001 RAL-405 1689 chr3L 18455399 18455416 chr3L 18455515 18455527 10 130 3.5 5.0 4.2 1.9 128 chr3L 18455399 intergenic not near genes chr3L 18455463 intergenic not near genes chr3L 18455527 intergenic not near genes chr3L_10_18455001 chr3L_18455001 RAL-405 1690 chr3L 18506138 18506159 chr3L 18509600 18509642 F-element 11 3469 6.0 5.5 5.8 1.6 3504 chr3L 18506138 intergenic not near genes chr3L 18507890 intergenic not near genes chr3L 18509642 intergenic not near genes chr3L_11_18505001 chr3L_18505001 RAL-405 1691 chr3L 18511854 18511907 chr3L 18511966 18512009 22 110 2.0 7.5 4.8 3.8 155 chr3L 18511854 intergenic not near genes chr3L 18511932 intergenic not near genes chr3L 18512009 intergenic not near genes chr3L_22_18510001 chr3L_18510001 RAL-405 1692 chr3L 18528613 18528661 chr3L 18537794 18537800 roo 13 9175 4.0 8.5 6.2 1.8 9187 chr3L 18528613 intergenic not near genes chr3L 18533206 intergenic not near genes chr3L 18537800 intergenic not near genes chr3L_13_18530001 chr3L_18530001 RAL-405 1693 chr3L 18570773 18570805 chr3L 18570936 18570963 10 160 4.0 5.0 4.5 1.8 190 chr3L 18570773 intron AstC-R1 + chr3L 18570868 intron AstC-R1 + chr3L 18570963 intron AstC-R1 + chr3L_10_18570001 chr3L_18570001 RAL-405 1694 chr3L 18581335 18581362 chr3L 18581432 18581443 7 93 1.5 12.0 6.8 0.9 108 chr3L 18581335 intergenic not near genes chr3L 18581389 intergenic not near genes chr3L 18581443 intergenic not near genes chr3L_7_18580001 chr3L_18580001 RAL-405 1695 chr3L 18593936 18593980 chr3L 18595936 18595950 Doc 12 1995 3.5 4.0 3.8 2.5 2014 chr3L 18593936 intergenic term - chr3L 18594943 intergenic not near genes chr3L 18595950 intergenic CR45389 + chr3L_12_18590001 chr3L_18590001 RAL-405 1696 chr3L 18625838 18625890 chr3L 18626117 18626156 11 277 2.0 3.5 2.8 2.9 318 chr3L 18625838 intergenic MYPT-75D + chr3L 18625997 5` UTR MYPT-75D + chr3L 18626156 5` UTR MYPT-75D + chr3L_11_18625001 chr3L_18625001 RAL-405 1697 chr3L 18649624 18649659 chr3L 18650007 18650015 10 378 6.5 2.5 4.5 1.8 391 chr3L 18649624 intron MYPT-75D + chr3L 18649820 intron MYPT-75D + chr3L 18650015 intron MYPT-75D + chr3L_10_18645001 chr3L_18645001 RAL-405 1698 chr3L 18710738 18710791 chr3L 18718709 18718732 Stalker2 23 7961 5.0 2.0 3.5 5.1 7994 chr3L 18710738 intergenic not near genes chr3L 18714735 intergenic not near genes chr3L 18718732 intergenic not near genes chr3L_23_18710001 chr3L_18710001 RAL-405 1699 chr3L 18753535 18753564 chr3L 18753637 18753666 10 100 3.5 5.0 4.2 1.9 131 chr3L 18753535 intron ftz-f1 - chr3L 18753600 intron ftz-f1 - chr3L 18753666 intron ftz-f1 - chr3L_10_18750001 chr3L_18750001 RAL-405 1700 chr3L 18772389 18772402 chr3L 18781090 18781103 roo 7 8701 12.5 1.5 7.0 0.9 8714 chr3L 18772389 intron ftz-f1 - chr3L 18776746 intron ftz-f1 - chr3L 18781103 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-405 1701 chr3L 18772403 18772436 chr3L 18781089 18781137 roo 12 8695 6.5 1.5 4.0 2.4 8734 chr3L 18772403 intron ftz-f1 - chr3L 18776770 intron ftz-f1 - chr3L 18781137 intron ftz-f1 - chr3L_12_18775001 chr3L_18775001 RAL-405 1702 chr3L 18784386 18784394 chr3L 18784489 18784503 6 107 7.5 10.5 9.0 0.6 117 chr3L 18784386 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784503 intron ftz-f1 - chr3L_6_18780001 chr3L_18780001 RAL-405 1703 chr3L 18784395 18784405 chr3L 18784488 18784504 5 98 6.0 10.0 8.0 0.6 109 chr3L 18784395 intron ftz-f1 - chr3L 18784450 intron ftz-f1 - chr3L 18784504 intron ftz-f1 - chr3L_5_18780001 chr3L_18780001 RAL-405 1704 chr3L 18797328 18797334 chr3L 18797398 18797429 4 92 10.0 5.0 7.5 0.5 101 chr3L 18797328 intron ftz-f1 - chr3L 18797378 intron ftz-f1 - chr3L 18797429 intron ftz-f1 - chr3L_4_18795001 chr3L_18795001 RAL-405 1705 chr3L 18820865 18820903 chr3L 18821064 18821096 12 197 8.0 10.5 9.2 1.2 231 chr3L 18820865 intergenic CG14073 -,HipHop + chr3L 18820980 intergenic HipHop +,CG14073 - chr3L 18821096 intergenic HipHop +,CG14073 - chr3L_12_18820001 chr3L_18820001 RAL-405 1706 chr3L 18823856 18823901 chr3L 18823973 18824006 9 108 2.5 0.5 1.5 3.6 150 chr3L 18823856 intron Cat + chr3L 18823931 intron Cat + chr3L 18824006 intron Cat + chr3L_9_18820001 chr3L_18820001 RAL-405 1707 chr3L 18833779 18833807 chr3L 18834963 18834991 1360 8 1181 4.5 12.0 8.2 0.9 1212 chr3L 18833779 intron Indy - chr3L 18834385 intron Indy - chr3L 18834991 intron Indy - chr3L_8_18830001 chr3L_18830001 RAL-405 1708 chr3L 18839716 18839768 chr3L 18839819 18839861 14 101 1.5 2.5 2.0 4.7 145 chr3L 18839716 intron Indy - chr3L 18839788 intron Indy - chr3L 18839861 intron Indy - chr3L_14_18835001 chr3L_18835001 RAL-405 1709 chr3L 18840846 18840892 chr3L 18841007 18841038 8 143 2.5 3.5 3.0 2.0 192 chr3L 18840846 intron Indy - chr3L 18840942 intron Indy - chr3L 18841038 intron Indy - chr3L_8_18840001 chr3L_18840001 RAL-405 1710 chr3L 18841345 18841390 chr3L 18841473 18841508 7 119 2.5 8.0 5.2 1.1 163 chr3L 18841345 intron Indy - chr3L 18841426 intron Indy - chr3L 18841508 intron Indy - chr3L_7_18840001 chr3L_18840001 RAL-405 1711 chr3L 18843848 18843875 chr3L 18843966 18843993 7 114 8.0 5.0 6.5 0.9 145 chr3L 18843848 intron Indy - chr3L 18843920 intron Indy - chr3L 18843993 intron Indy - chr3L_7_18840001 chr3L_18840001 RAL-405 1712 chr3L 18924463 18924507 chr3L 18924559 18924568 10 92 2.0 7.5 4.8 1.7 105 chr3L 18924463 intron CG32204 - chr3L 18924516 intron CG32204 - chr3L 18924568 intron CG32204 - chr3L_10_18920001 chr3L_18920001 RAL-405 1713 chr3L 18929944 18929979 chr3L 18930043 18930069 6 100 5.0 4.5 4.8 1.0 125 chr3L 18929944 intron CG32204 - chr3L 18930006 intron CG32204 - chr3L 18930069 exon CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-405 1714 chr3L 18933086 18933102 chr3L 18933191 18933207 7 103 5.5 7.0 6.2 1.0 121 chr3L 18933086 intron CG32204 - chr3L 18933146 intron CG32204 - chr3L 18933207 intron CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-405 1715 chr3L 18933105 18933124 chr3L 18933180 18933202 7 97 4.0 4.0 4.0 1.4 97 chr3L 18933105 intron CG32204 - chr3L 18933154 intron CG32204 - chr3L 18933202 intron CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-405 1716 chr3L 18959977 18960029 chr3L 18960078 18960120 15 99 4.5 5.0 4.8 2.6 143 chr3L 18959977 intergenic not near genes chr3L 18960048 intergenic not near genes chr3L 18960120 intergenic not near genes chr3L_15_18960001 chr3L_18960001 RAL-405 1717 chr3L 19015162 19015217 chr3L 19015266 19015312 5 99 2.5 2.0 2.2 1.6 150 chr3L 19015162 intron nkd - chr3L 19015237 intron nkd - chr3L 19015312 intron nkd - chr3L_5_19015001 chr3L_19015001 RAL-405 1718 chr3L 19061997 19062030 chr3L 19066462 19066500 6 4468 11.5 35.0 23.2 0.2 4503 chr3L 19061997 intron CG3797 - chr3L 19064248 intron CG6812 + chr3L 19066500 3` UTR Mkp3 - chr3L_6_19060001 chr3L_19060001 RAL-405 1719 chr3L 19117022 19117072 chr3L 19124489 19124529 mdg1 7 7465 8.5 6.0 7.2 0.9 7507 chr3L 19117022 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124529 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-405 1720 chr3L 19138135 19138155 chr3L 19138237 19138269 5 109 0.0 7.5 3.8 1.0 134 chr3L 19138135 intron CG14082 - chr3L 19138202 intron CG14082 - chr3L 19138269 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-405 1721 chr3L 19138754 19138778 chr3L 19138857 19138895 8 114 3.0 2.0 2.5 2.3 141 chr3L 19138754 intron CG14082 - chr3L 19138824 intron CG14082 - chr3L 19138895 5` UTR CG14082 - chr3L_8_19135001 chr3L_19135001 RAL-405 1722 chr3L 19172358 19172390 chr3L 19172466 19172494 5 105 1.5 0.5 1.0 2.5 136 chr3L 19172358 intron fz2 - chr3L 19172426 intron fz2 - chr3L 19172494 intron fz2 - chr3L_5_19170001 chr3L_19170001 RAL-405 1723 chr3L 19182386 19182416 chr3L 19182467 19182517 7 97 6.5 1.5 4.0 1.4 131 chr3L 19182386 intron fz2 - chr3L 19182452 intron fz2 - chr3L 19182517 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-405 1724 chr3L 19186924 19186928 chr3L 19187040 19187044 5 116 16.5 7.0 11.8 0.4 120 chr3L 19186924 intron fz2 - chr3L 19186984 intron fz2 - chr3L 19187044 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-405 1725 chr3L 19186932 19186973 chr3L 19187038 19187064 16 109 7.5 6.0 6.8 2.1 132 chr3L 19186932 intron fz2 - chr3L 19186998 intron fz2 - chr3L 19187064 intron fz2 - chr3L_16_19185001 chr3L_19185001 RAL-405 1726 chr3L 19208040 19208089 chr3L 19209434 19209462 Doc 5 1388 0.0 5.5 2.8 1.3 1422 chr3L 19208040 intron fz2 - chr3L 19208751 intron fz2 - chr3L 19209462 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-405 1727 chr3L 19210104 19210137 chr3L 19210220 19210248 8 114 0.0 2.0 1.0 4.0 144 chr3L 19210104 intron fz2 - chr3L 19210176 intron fz2 - chr3L 19210248 intron fz2 - chr3L_8_19210001 chr3L_19210001 RAL-405 1728 chr3L 19220633 19220637 chr3L 22908066 22908066 8 3687431 15.0 31.0 23.0 0.3 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-405 1729 chr3L 19222355 19222396 chr3L 19222496 19222537 18 135 3.5 6.5 5.0 3.0 182 chr3L 19222355 intron fz2 - chr3L 19222446 intron fz2 - chr3L 19222537 intron fz2 - chr3L_18_19220001 chr3L_19220001 RAL-405 1730 chr3L 19238708 19238721 chr3L 19238835 19238848 4 126 11.5 4.5 8.0 0.4 140 chr3L 19238708 intergenic not near genes chr3L 19238778 intergenic not near genes chr3L 19238848 intergenic not near genes chr3L_4_19235001 chr3L_19235001 RAL-405 1731 chr3L 19238730 19238748 chr3L 19238830 19238875 6 122 8.5 4.0 6.2 0.8 145 chr3L 19238730 intergenic not near genes chr3L 19238802 intergenic not near genes chr3L 19238875 intergenic not near genes chr3L_6_19235001 chr3L_19235001 RAL-405 1732 chr3L 19369829 19369872 chr3L 19369931 19369944 7 95 2.5 8.0 5.2 1.1 115 chr3L 19369829 intron CG32206 - chr3L 19369886 intron CG32206 - chr3L 19369944 intron CG32206 - chr3L_7_19365001 chr3L_19365001 RAL-405 1733 chr3L 19378271 19378309 chr3L 19378677 19378704 6 404 5.0 5.0 5.0 1.0 433 chr3L 19378271 intron CG32206 - chr3L 19378488 intron CG32206 - chr3L 19378704 intron CG32206 - chr3L_6_19375001 chr3L_19375001 RAL-405 1734 chr3L 19430382 19430418 chr3L 19430480 19430491 13 95 8.5 3.0 5.8 1.9 109 chr3L 19430382 intergenic not near genes chr3L 19430436 intergenic not near genes chr3L 19430491 intergenic not near genes chr3L_13_19430001 chr3L_19430001 RAL-405 1735 chr3L 19430421 19430427 chr3L 19430474 19430497 5 77 7.5 3.0 5.2 0.8 76 chr3L 19430421 intergenic not near genes chr3L 19430459 intergenic not near genes chr3L 19430497 intergenic not near genes chr3L_5_19430001 chr3L_19430001 RAL-405 1736 chr3L 19527918 19527928 chr3L 19528006 19528027 8 95 9.0 12.0 10.5 0.7 109 chr3L 19527918 intergenic not near genes chr3L 19527972 intergenic not near genes chr3L 19528027 intergenic not near genes chr3L_8_19525001 chr3L_19525001 RAL-405 1737 chr3L 19527929 19527956 chr3L 19528003 19528055 16 93 7.5 11.5 9.5 1.5 126 chr3L 19527929 intergenic not near genes chr3L 19527992 intergenic not near genes chr3L 19528055 intergenic not near genes chr3L_16_19525001 chr3L_19525001 RAL-405 1738 chr3L 19544217 19544242 chr3L 19544313 19544338 13 92 13.0 5.0 9.0 1.3 121 chr3L 19544217 intergenic CG9279 -,l(3)76BDr - chr3L 19544278 intergenic l(3)76BDr -,CG9279 - chr3L 19544338 intergenic l(3)76BDr -,CG9279 - chr3L_13_19540001 chr3L_19540001 RAL-405 1739 chr3L 19544244 19544266 chr3L 19544310 19544362 8 90 7.5 6.0 6.8 1.0 118 chr3L 19544244 intergenic CG9279 -,l(3)76BDr - chr3L 19544303 intergenic l(3)76BDr -,CG9279 - chr3L 19544362 3` UTR l(3)76BDr - chr3L_8_19540001 chr3L_19540001 RAL-405 1740 chr3L 19564941 19564984 chr3L 19565055 19565088 11 108 1.5 4.0 2.8 2.9 147 chr3L 19564941 intergenic mir-9a + chr3L 19565014 intergenic mir-9a + chr3L 19565088 intergenic mir-9a + chr3L_11_19565001 chr3L_19565001 RAL-405 1741 chr3L 19703827 19703876 chr3L 19704000 19704050 5 174 5.5 7.0 6.2 0.7 223 chr3L 19703827 intron serp - chr3L 19703938 intron serp - chr3L 19704050 intron serp - chr3L_5_19700001 chr3L_19700001 RAL-405 1742 chr3L 19820280 19820319 chr3L 19827849 19827888 412 15 7567 4.0 5.0 4.5 2.7 7608 chr3L 19820280 intron Deaf1 + chr3L 19824084 intron Deaf1 + chr3L 19827888 intron Deaf1 + chr3L_15_19820001 chr3L_19820001 RAL-405 1743 chr3L 19848511 19848528 chr3L 19857711 19857733 roo 4 9201 10.5 14.5 12.5 0.3 9222 chr3L 19848511 intron Papss + chr3L 19853122 intron Papss + chr3L 19857733 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-405 1744 chr3L 19861823 19861839 chr3L 19863631 19863634 S-element 5 1801 6.0 8.5 7.2 0.6 1811 chr3L 19861823 5` UTR CR45433 + chr3L 19862728 intergenic not near genes chr3L 19863634 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-405 1745 chr3L 19981189 19981207 chr3L 19981285 19981307 11 98 11.0 6.0 8.5 1.2 118 chr3L 19981189 intergenic CG17732 + chr3L 19981248 intergenic CG17732 + chr3L 19981307 intergenic CG17732 + chr3L_11_19980001 chr3L_19980001 RAL-405 1746 chr3L 19981209 19981236 chr3L 19981284 19981336 13 88 5.5 5.5 5.5 2.0 127 chr3L 19981209 intergenic CG17732 + chr3L 19981272 intergenic CG17732 + chr3L 19981336 intergenic CG17732 + chr3L_13_19980001 chr3L_19980001 RAL-405 1747 chr3L 20029345 20029393 chr3L 20030199 20030241 7 847 3.0 3.0 3.0 1.8 896 chr3L 20029345 intergenic CG14184 - chr3L 20029793 intergenic not near genes chr3L 20030241 intergenic not near genes chr3L_7_20025001 chr3L_20025001 RAL-405 1748 chr3L 20113661 20113687 chr3L 20122913 20122915 roo 11 9264 8.0 4.0 6.0 1.6 9254 chr3L 20113661 intergenic not near genes chr3L 20118288 intergenic not near genes chr3L 20122915 intergenic not near genes chr3L_11_20115001 chr3L_20115001 RAL-405 1749 chr3L 20143071 20143118 chr3L 20143171 20143173 15 93 6.5 10.0 8.2 1.6 102 chr3L 20143071 intergenic not near genes chr3L 20143122 intergenic not near genes chr3L 20143173 intergenic not near genes chr3L_15_20140001 chr3L_20140001 RAL-405 1750 chr3L 20148265 20148317 chr3L 20148375 20148427 8 105 3.0 4.0 3.5 1.8 162 chr3L 20148265 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148427 intergenic not near genes chr3L_8_20145001 chr3L_20145001 RAL-405 1751 chr3L 20256644 20256666 chr3L 20256748 20256796 6 117 1.0 4.5 2.8 1.6 152 chr3L 20256644 intron rdgC + chr3L 20256720 intron rdgC + chr3L 20256796 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-405 1752 chr3L 20266417 20266430 chr3L 20266491 20266577 4 104 19.0 20.5 19.8 0.2 160 chr3L 20266417 exon CG32228 + chr3L 20266497 exon CG32228 + chr3L 20266577 exon CG32228 + chr3L_4_20265001 chr3L_20265001 RAL-405 1753 chr3L 20525228 20525228 chr3L 22908066 22908066 5 2382838 19.5 31.0 25.2 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-405 1754 chr3L 20525228 20525228 chr3L 24821492 24821493 4 4296265 19.5 12.5 16.0 0.2 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-405 1755 chr3L 20525229 20525229 chr3L 22908066 22908067 8 2382838 19.5 31.0 25.2 0.3 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_8_21715001 chr3L_21715001 RAL-405 1756 chr3L 20536302 20536339 chr3L 20536387 20536440 6 93 5.0 3.0 4.0 1.2 138 chr3L 20536302 intron Rcd2 - chr3L 20536371 intron Rcd2 - chr3L 20536440 intron Rcd2 - chr3L_6_20535001 chr3L_20535001 RAL-405 1757 chr3L 20570017 20570045 chr3L 20570132 20570171 6 114 2.0 2.5 2.2 1.9 154 chr3L 20570017 intergenic not near genes chr3L 20570094 intergenic not near genes chr3L 20570171 intergenic not near genes chr3L_6_20570001 chr3L_20570001 RAL-405 1758 chr3L 20710749 20710793 chr3L 20710836 20710860 19 89 4.0 2.5 3.2 4.5 111 chr3L 20710749 intergenic not near genes chr3L 20710804 intergenic not near genes chr3L 20710860 intergenic not near genes chr3L_19_20710001 chr3L_20710001 RAL-405 1759 chr3L 20821270 20821307 chr3L 20824900 20824921 NOF 12 3627 6.5 3.0 4.8 2.1 3651 chr3L 20821270 intron Pka-R1 + chr3L 20823096 intron Pka-R1 + chr3L 20824921 intron Pka-R1 + chr3L_12_20820001 chr3L_20820001 RAL-405 1760 chr3L 20831443 20831490 chr3L 20831584 20831631 10 128 5.5 5.0 5.2 1.6 188 chr3L 20831443 intron Pka-R1 + chr3L 20831537 intron Pka-R1 + chr3L 20831631 intron Pka-R1 + chr3L_10_20830001 chr3L_20830001 RAL-405 1761 chr3L 20849263 20849301 chr3L 20849352 20849400 14 93 8.0 6.5 7.2 1.7 137 chr3L 20849263 intron CG32432 - chr3L 20849332 intron CG32432 - chr3L 20849400 intron CG32432 - chr3L_14_20845001 chr3L_20845001 RAL-405 1762 chr3L 20942555 20942603 chr3L 20942652 20942690 9 83 3.5 7.5 5.5 1.4 135 chr3L 20942555 intron fng - chr3L 20942622 intron fng - chr3L 20942690 intron fng - chr3L_9_20940001 chr3L_20940001 RAL-405 1763 chr3L 20964610 20964642 chr3L 20964706 20964734 6 91 1.5 2.5 2.0 2.0 124 chr3L 20964610 3` UTR CG12983 - chr3L 20964672 3` UTR CG12983 - chr3L 20964734 3` UTR CG12983 - chr3L_6_20960001 chr3L_20960001 RAL-405 1764 chr3L 20977421 20977443 chr3L 20977537 20977569 6 136 4.5 2.0 3.2 1.4 148 chr3L 20977421 intergenic not near genes chr3L 20977495 intergenic not near genes chr3L 20977569 intergenic not near genes chr3L_6_20975001 chr3L_20975001 RAL-405 1765 chr3L 21010651 21010674 chr3L 21010727 21010775 6 92 6.5 4.0 5.2 1.0 124 chr3L 21010651 intron skd - chr3L 21010713 intron skd - chr3L 21010775 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-405 1766 chr3L 21035436 21035484 chr3L 21035533 21035560 15 92 3.5 3.0 3.2 3.6 124 chr3L 21035436 intron siz + chr3L 21035498 intron siz + chr3L 21035560 intron siz + chr3L_15_21035001 chr3L_21035001 RAL-405 1767 chr3L 21057119 21057162 chr3L 21057355 21057398 14 233 2.0 6.0 4.0 2.8 279 chr3L 21057119 intron siz + chr3L 21057258 intron siz + chr3L 21057398 intron siz + chr3L_14_21055001 chr3L_21055001 RAL-405 1768 chr3L 21067938 21067973 chr3L 21068034 21068073 10 92 3.5 3.0 3.2 2.4 135 chr3L 21067938 intron siz + chr3L 21068006 intron siz + chr3L 21068073 intron siz + chr3L_10_21065001 chr3L_21065001 RAL-405 1769 chr3L 21082193 21082237 chr3L 21082291 21082309 11 92 6.0 6.5 6.2 1.5 116 chr3L 21082193 intron ko - chr3L 21082251 intron ko - chr3L 21082309 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-405 1770 chr3L 21100489 21100537 chr3L 21100765 21100808 12 276 8.0 0.0 4.0 2.4 319 chr3L 21100489 intron ko - chr3L 21100648 intron ko - chr3L 21100808 intron ko - chr3L_12_21100001 chr3L_21100001 RAL-405 1771 chr3L 21151849 21151861 chr3L 21156953 21156965 flea 4 5104 3.5 7.0 5.2 0.6 5116 chr3L 21151849 intron Ac78C - chr3L 21154407 intron Ac78C - chr3L 21156965 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-405 1772 chr3L 21151863 21151897 chr3L 21156950 21157001 flea 13 5094 2.0 6.5 4.2 2.5 5138 chr3L 21151863 intron Ac78C - chr3L 21154432 intron Ac78C - chr3L 21157001 intron Ac78C - chr3L_13_21150001 chr3L_21150001 RAL-405 1773 chr3L 21169462 21169474 chr3L 21170387 21170399 4 928 7.5 3.5 5.5 0.6 937 chr3L 21169462 intron Ac78C - chr3L 21169930 intron Ac78C - chr3L 21170399 intron Ac78C - chr3L_4_21165001 chr3L_21165001 RAL-405 1774 chr3L 21232795 21232815 chr3L 21232938 21232963 5 145 8.5 0.5 4.5 0.9 168 chr3L 21232795 intron Eip78C + chr3L 21232879 intron Eip78C + chr3L 21232963 intron Eip78C + chr3L_5_21230001 chr3L_21230001 RAL-405 1775 chr3L 21232822 21232840 chr3L 21232933 21232978 7 127 4.0 0.5 2.2 2.2 156 chr3L 21232822 intron Eip78C + chr3L 21232900 intron Eip78C + chr3L 21232978 intron Eip78C + chr3L_7_21230001 chr3L_21230001 RAL-405 1776 chr3L 21301712 21301723 chr3L 21301818 21301829 6 105 7.5 0.5 4.0 1.2 117 chr3L 21301712 5` UTR CR45432 + chr3L 21301770 5` UTR CR45432 + chr3L 21301829 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_6_21300001 chr3L_21300001 RAL-405 1777 chr3L 21301726 21301751 chr3L 21301817 21301856 4 100 5.0 0.5 2.8 1.1 130 chr3L 21301726 5` UTR CR45432 + chr3L 21301791 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301856 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_4_21300001 chr3L_21300001 RAL-405 1778 chr3L 21306134 21306150 chr3L 21315313 21315329 roo 9 9176 10.5 4.0 7.2 1.1 9195 chr3L 21306134 3` UTR CG7632 + chr3L 21310732 intron Pc - chr3L 21315329 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-405 1779 chr3L 21306152 21306176 chr3L 21315306 21315355 roo 10 9170 6.0 2.5 4.2 1.9 9203 chr3L 21306152 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310754 intron Pc - chr3L 21315355 3` UTR Pc - chr3L_10_21310001 chr3L_21310001 RAL-405 1780 chr3L 21319506 21319559 chr3L 21319616 21319662 16 105 1.0 4.5 2.8 4.2 156 chr3L 21319506 5` UTR Rab26 + chr3L 21319584 5` UTR Rab26 + chr3L 21319662 5` UTR Rab26 + chr3L_16_21315001 chr3L_21315001 RAL-405 1781 chr3L 21398158 21398200 chr3L 21398257 21398299 12 95 3.0 4.0 3.5 2.7 141 chr3L 21398158 intron rgn + chr3L 21398228 intron rgn + chr3L 21398299 intron rgn + chr3L_12_21395001 chr3L_21395001 RAL-405 1782 chr3L 21412741 21412776 chr3L 21412823 21412857 5 79 1.5 4.0 2.8 1.3 116 chr3L 21412741 intron rgn + chr3L 21412799 intron rgn + chr3L 21412857 intron rgn + chr3L_5_21410001 chr3L_21410001 RAL-405 1783 chr3L 21415123 21415136 chr3L 21415226 21415239 4 103 4.5 3.0 3.8 0.8 116 chr3L 21415123 intron rgn + chr3L 21415181 intron rgn + chr3L 21415239 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-405 1784 chr3L 21415138 21415166 chr3L 21415220 21415269 8 94 3.0 3.0 3.0 2.0 131 chr3L 21415138 intron rgn + chr3L 21415204 intron rgn + chr3L 21415269 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-405 1785 chr3L 21417840 21417859 chr3L 21417916 21417955 4 80 4.5 7.0 5.8 0.6 115 chr3L 21417840 intron rgn + chr3L 21417898 intron rgn + chr3L 21417955 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-405 1786 chr3L 4341332 4341332 chr3L 21448027 21448027 4 17106695 16.5 19.0 17.8 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-405 1787 chr3L 21587054 21587091 chr3L 21587258 21587295 11 200 4.0 4.0 4.0 2.2 241 chr3L 21587054 intron TfAP-2 + chr3L 21587174 intron TfAP-2 + chr3L 21587295 intron TfAP-2 + chr3L_11_21585001 chr3L_21585001 RAL-405 1788 chr3L 21769033 21769085 chr3L 21769140 21769191 22 103 4.0 5.5 4.8 3.8 158 chr3L 21769033 intron,intron Syn1 -,CG42689 + chr3L 21769112 intron,intron Syn1 -,CG42689 + chr3L 21769191 intron,intron Syn1 -,CG42689 + chr3L_22_21765001 chr3L_21765001 RAL-405 1789 chr3L 21776663 21776700 chr3L 21776770 21776801 4 106 2.0 5.5 3.8 0.8 138 chr3L 21776663 intron,intron CG42689 +,CG42552 + chr3L 21776732 intron,intron CG42689 +,CG42552 + chr3L 21776801 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-405 1790 chr3L 21970801 21970810 chr3L 21970900 21970921 4 102 11.0 5.5 8.2 0.4 120 chr3L 21970801 intergenic not near genes chr3L 21970861 intergenic not near genes chr3L 21970921 intergenic not near genes chr3L_4_21970001 chr3L_21970001 RAL-405 1791 chr3L 21970812 21970825 chr3L 21970896 21970936 4 98 8.0 5.5 6.8 0.5 124 chr3L 21970812 intergenic not near genes chr3L 21970874 intergenic not near genes chr3L 21970936 intergenic not near genes chr3L_4_21970001 chr3L_21970001 RAL-405 1792 chr3L 21970826 21970834 chr3L 21970894 21970940 4 98 7.0 5.0 6.0 0.6 114 chr3L 21970826 intergenic not near genes chr3L 21970883 intergenic not near genes chr3L 21970940 intergenic not near genes chr3L_4_21970001 chr3L_21970001 RAL-405 1793 chr3L 22023202 22023248 chr3L 22023314 22023349 13 100 4.5 4.0 4.2 2.5 147 chr3L 22023202 intergenic not near genes chr3L 22023276 intergenic not near genes chr3L 22023349 intergenic not near genes chr3L_13_22020001 chr3L_22020001 RAL-405 1794 chr3L 22099656 22099707 chr3L 22105862 22105888 3S18 28 6197 4.0 7.5 5.8 4.1 6232 chr3L 22099656 intergenic not near genes chr3L 22102772 intergenic not near genes chr3L 22105888 intergenic not near genes chr3L_28_22100001 chr3L_22100001 RAL-405 1795 chr3L 22118989 22119037 chr3L 22127650 22127696 8 8669 17.5 12.5 15.0 0.5 8707 chr3L 22118989 intergenic not near genes chr3L 22123342 intergenic CR45235 + chr3L 22127696 intergenic not near genes chr3L_8_22120001 chr3L_22120001 RAL-405 1796 chr3L 22130498 22130522 chr3L 22130654 22130688 12 162 4.0 2.0 3.0 3.0 190 chr3L 22130498 intergenic not near genes chr3L 22130593 intergenic not near genes chr3L 22130688 intergenic not near genes chr3L_12_22130001 chr3L_22130001 RAL-405 1797 chr3L 22207334 22207382 chr3L 22207445 22207487 7 103 5.0 1.0 3.0 1.8 153 chr3L 22207334 intron olf413 + chr3L 22207410 intron olf413 + chr3L 22207487 intron olf413 + chr3L_7_22205001 chr3L_22205001 RAL-405 1798 chr3L 22215146 22215191 chr3L 22215244 22215289 7 98 2.5 1.0 1.8 2.5 143 chr3L 22215146 intron olf413 + chr3L 22215218 intron olf413 + chr3L 22215289 intron olf413 + chr3L_7_22215001 chr3L_22215001 RAL-405 1799 chr3L 22275589 22275631 chr3L 22275695 22275697 9 100 4.0 4.5 4.2 1.7 108 chr3L 22275589 intron srpk79D + chr3L 22275643 intron srpk79D + chr3L 22275697 intron srpk79D + chr3L_9_22275001 chr3L_22275001 RAL-405 1800 chr3L 22366709 22366718 chr3L 22366807 22366816 5 98 4.5 10.5 7.5 0.6 107 chr3L 22366709 intron Ten-m - chr3L 22366762 intron Ten-m - chr3L 22366816 intron Ten-m - chr3L_5_22365001 chr3L_22365001 RAL-405 1801 chr3L 22366722 22366740 chr3L 22366800 22366838 6 91 1.5 9.0 5.2 1.0 116 chr3L 22366722 intron Ten-m - chr3L 22366780 intron Ten-m - chr3L 22366838 intron Ten-m - chr3L_6_22365001 chr3L_22365001 RAL-405 1802 chr3L 22377367 22377386 chr3L 22377443 22377455 5 84 1.0 1.5 1.2 2.3 88 chr3L 22377367 intron Ten-m - chr3L 22377411 intron Ten-m - chr3L 22377455 intron Ten-m - chr3L_5_22375001 chr3L_22375001 RAL-405 1803 chr3L 22451575 22451600 chr3L 22451661 22451696 11 92 3.0 6.0 4.5 2.0 121 chr3L 22451575 intergenic not near genes chr3L 22451636 intergenic not near genes chr3L 22451696 intergenic not near genes chr3L_11_22450001 chr3L_22450001 RAL-405 1804 chr3L 22543058 22543105 chr3L 22543155 22543192 24 94 2.5 4.0 3.2 5.7 134 chr3L 22543058 intergenic not near genes chr3L 22543125 intergenic not near genes chr3L 22543192 intergenic not near genes chr3L_24_22540001 chr3L_22540001 RAL-405 1805 chr3L 22543720 22543731 chr3L 22543817 22543828 8 95 3.0 3.5 3.2 1.9 108 chr3L 22543720 intergenic not near genes chr3L 22543774 intergenic not near genes chr3L 22543828 intergenic not near genes chr3L_8_22540001 chr3L_22540001 RAL-405 1806 chr3L 22543737 22543757 chr3L 22543803 22543854 12 85 1.5 2.5 2.0 4.0 117 chr3L 22543737 intergenic not near genes chr3L 22543796 intergenic not near genes chr3L 22543854 intergenic not near genes chr3L_12_22540001 chr3L_22540001 RAL-405 1807 chr3L 22555748 22555798 chr3L 22563238 22563259 blood 8 7482 4.5 1.5 3.0 2.0 7511 chr3L 22555748 intergenic not near genes chr3L 22559504 intergenic not near genes chr3L 22563259 intergenic not near genes chr3L_8_22555001 chr3L_22555001 RAL-405 1808 chr3L 22570420 22570458 chr3L 22570568 22570622 10 158 5.5 5.0 5.2 1.6 202 chr3L 22570420 intergenic not near genes chr3L 22570521 intergenic not near genes chr3L 22570622 intergenic not near genes chr3L_10_22570001 chr3L_22570001 RAL-405 1809 chr3L 22617180 22617213 chr3L 22624642 22624680 blood 10 7466 4.5 2.5 3.5 2.2 7500 chr3L 22617180 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624680 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-405 1810 chr3L 22652303 22652312 chr3L 22652461 22652470 4 158 7.5 2.5 5.0 0.7 167 chr3L 22652303 exon CG33772 - chr3L 22652386 exon CG33772 - chr3L 22652470 exon CG33772 - chr3L_4_22650001 chr3L_22650001 RAL-405 1811 chr3L 22652315 22652354 chr3L 22652457 22652507 15 151 3.0 1.5 2.2 4.7 192 chr3L 22652315 exon CG33772 - chr3L 22652411 intron CG33772 - chr3L 22652507 exon CG33772 - chr3L_15_22650001 chr3L_22650001 RAL-405 1812 chr3L 22761368 22761386 chr3L 22766822 22766840 Ivk 7 5451 13.0 8.0 10.5 0.6 5472 chr3L 22761368 intron SPoCk + chr3L 22764104 intron SPoCk + chr3L 22766840 intron SPoCk + chr3L_7_22760001 chr3L_22760001 RAL-405 1813 chr3L 22761393 22761416 chr3L 22766820 22766860 Ivk 13 5445 6.0 6.5 6.2 1.8 5467 chr3L 22761393 intron SPoCk + chr3L 22764126 intron SPoCk + chr3L 22766860 intron SPoCk + chr3L_13_22760001 chr3L_22760001 RAL-405 1814 chr3L 22865970 22866012 chr3L 22867123 22867162 Doc 11 1149 5.5 6.5 6.0 1.6 1192 chr3L 22865970 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867162 intron CG33170 + chr3L_11_22865001 chr3L_22865001 RAL-405 1815 chr3L 22897175 22897224 chr3L 22897278 22897326 10 98 4.0 1.5 2.8 2.6 151 chr3L 22897175 intergenic not near genes chr3L 22897250 intergenic not near genes chr3L 22897326 intergenic not near genes chr3L_10_22895001 chr3L_22895001 RAL-405 1816 chr3L 20525229 20525229 chr3L 22908066 22908066 10 2382837 19.5 31.0 25.2 0.4 2382837 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-405 1817 chr3L 20525230 20525230 chr3L 22908067 22908067 4 2382837 19.5 31.0 25.2 0.2 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-405 1818 chr3L 22980571 22980581 chr3L 22980676 22980686 4 103 1.5 5.0 3.2 1.0 115 chr3L 22980571 intergenic not near genes chr3L 22980628 intergenic not near genes chr3L 22980686 intergenic not near genes chr3L_4_22980001 chr3L_22980001 RAL-405 1819 chr3L 22989844 22989863 chr3L 22996838 22996852 297 5 6988 6.5 7.5 7.0 0.6 7008 chr3L 22989844 intergenic not near genes chr3L 22993348 intergenic not near genes chr3L 22996852 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-405 1820 chr3L 22989868 22989893 chr3L 22996835 22996872 297 11 6982 4.5 6.5 5.5 1.7 7004 chr3L 22989868 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996872 intergenic not near genes chr3L_11_22990001 chr3L_22990001 RAL-405 1821 chr3L 23247586 23247620 chr3L 23248415 23248454 10 827 37.5 41.0 39.2 0.2 868 chr3L 23247586 intron nAChRalpha4 + chr3L 23248020 intron nAChRalpha4 + chr3L 23248454 intron nAChRalpha4 + chr3L_10_23245001 chr3L_23245001 RAL-405 1822 chr3L 23436971 23437006 chr3L 23437133 23437158 7 160 7.5 7.0 7.2 0.9 187 chr3L 23436971 intergenic not near genes chr3L 23437064 intergenic not near genes chr3L 23437158 intergenic not near genes chr3L_7_23435001 chr3L_23435001 RAL-405 1823 chr3L 23721312 23721359 chr3L 23721408 23721455 10 85 0.0 4.0 2.0 3.3 143 chr3L 23721312 intergenic not near genes chr3L 23721384 intergenic not near genes chr3L 23721455 intergenic not near genes chr3L_10_23720001 chr3L_23720001 RAL-405 1824 chr3L 23750930 23750938 chr3L 23751112 23751154 7 190 13.0 20.5 16.8 0.4 224 chr3L 23750930 intergenic not near genes chr3L 23751042 intergenic not near genes chr3L 23751154 intergenic not near genes chr3L_7_23750001 chr3L_23750001 RAL-405 1825 chr3L 23848824 23848839 chr3L 23849668 23849677 R1A1-element 4 842 0.0 2.5 1.2 1.8 853 chr3L 23848824 intron CG40470 - chr3L 23849250 intron CG40470 - chr3L 23849677 intron CG40470 - chr3L_4_23845001 chr3L_23845001 RAL-405 1826 chr3L 23875507 23875542 chr3L 23875607 23875608 7 94 3.5 1.0 2.2 2.2 101 chr3L 23875507 intron CG40470 - chr3L 23875558 intron CG40470 - chr3L 23875608 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-405 1827 chr3L 24012402 24012416 chr3L 24020752 24020754 roo 6 8349 5.5 7.0 6.2 0.8 8352 chr3L 24012402 intergenic not near genes chr3L 24016578 intergenic not near genes chr3L 24020754 intergenic not near genes chr3L_6_24015001 chr3L_24015001 RAL-405 1828 chr3L 24012417 24012438 chr3L 24020749 24020774 roo 8 8343 2.5 7.0 4.8 1.4 8357 chr3L 24012417 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020774 intergenic not near genes chr3L_8_24015001 chr3L_24015001 RAL-405 1829 chr3L 24791878 24791913 chr3L 24796677 24796712 Doc 13 4792 6.5 3.5 5.0 2.2 4834 chr3L 24791878 intergenic not near genes chr3L 24794295 intergenic not near genes chr3L 24796712 intergenic not near genes chr3L_13_24790001 chr3L_24790001 RAL-405 1830 chr3L 18198929 18198930 chr3L 24821492 24821492 7 6622562 0.0 12.5 6.2 1.0 6622563 chr3L 18198929 intergenic not near genes chr3L 21510210 intron M6 + chr3L 24821492 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-405 1831 chr3L 20525228 20525230 chr3L 24821492 24821492 5 4296263 19.5 12.5 16.0 0.3 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-405 1832 chr3L 18198930 18198931 chr3L 24821493 24821493 5 6622562 0.0 12.5 6.2 0.7 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-405 1833 chr3L 20525228 20525230 chr3L 24821493 24821493 4 4296264 19.5 12.5 16.0 0.2 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-405 1834 chr3L 20525227 20525231 chr3L 24821494 24821494 5 4296266 20.5 12.5 16.5 0.3 4296267 chr3L 20525227 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-405 1835 chr3L 26011512 26011557 chr3L 26011628 26011680 6 113 4.5 1.0 2.8 1.6 168 chr3L 26011512 intron CG40178 - chr3L 26011596 intron CG40178 - chr3L 26011680 intron CG40178 - chr3L_6_26010001 chr3L_26010001 RAL-405 1836 chr3L 27347490 27347500 chr3L 27347566 27347605 7 96 1.5 4.5 3.0 1.8 115 chr3L 27347490 intron Dbp80 + chr3L 27347548 intron Dbp80 + chr3L 27347605 intron Dbp80 + chr3L_7_27345001 chr3L_27345001 RAL-405 1837 chr3R 97107 97113 chr3R 99848 99849 6 2737 14.0 15.5 14.8 0.4 2742 chr3R 97107 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_6_95001 chr3R_95001 RAL-405 1838 chr3R 2998453 2998489 chr3R 2998549 2998585 9 95 4.5 3.0 3.8 1.9 132 chr3R 2998453 intron CG42618 - chr3R 2998519 intron CG42618 - chr3R 2998585 intron CG42618 - chr3R_9_2995001 chr3R_2995001 RAL-405 1839 chr3R 3916191 3916207 chr3R 3916318 3916334 4 127 32.5 24.5 28.5 0.1 143 chr3R 3916191 intergenic not near genes chr3R 3916262 intergenic not near genes chr3R 3916334 intergenic not near genes chr3R_4_3915001 chr3R_3915001 RAL-405 1840 chr3R 4105025 4105067 chr3R 4110249 4110291 copia 11 5218 4.0 4.5 4.2 2.1 5266 chr3R 4105025 intergenic not near genes chr3R 4107658 intergenic not near genes chr3R 4110291 intergenic not near genes chr3R_11_4105001 chr3R_4105001 RAL-405 1841 chr3R 4132889 4132931 chr3R 4133063 4133105 10 172 3.0 3.5 3.2 2.4 216 chr3R 4132889 5` UTR Gfat1 + chr3R 4132997 intron Gfat1 + chr3R 4133105 intron Gfat1 + chr3R_10_4130001 chr3R_4130001 RAL-405 1842 chr3R 4206049 4206103 chr3R 4211644 4211698 mdg3 12 5588 5.5 2.5 4.0 2.4 5649 chr3R 4206049 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211698 intron CG14636 - chr3R_12_4205001 chr3R_4205001 RAL-405 1843 chr3R 4366765 4366791 chr3R 4375138 4375188 roo 14 8384 7.5 1.5 4.5 2.5 8423 chr3R 4366765 3` UTR CG1090 + chr3R 4370976 intergenic not near genes chr3R 4375188 5` UTR CR44922 + chr3R_14_4370001 chr3R_4370001 RAL-405 1844 chr3R 4408394 4408432 chr3R 4412718 4412751 Juan 16 4320 9.0 8.5 8.8 1.6 4357 chr3R 4408394 intron CG32944 - chr3R 4410572 intron CG32944 - chr3R 4412751 intron CG32944 - chr3R_16_4410001 chr3R_4410001 RAL-405 1845 chr3R 4472110 4472122 chr3R 4472212 4472224 5 99 16.5 6.5 11.5 0.4 114 chr3R 4472110 intron CG31523 - chr3R 4472167 intron CG31523 - chr3R 4472224 intron CG31523 - chr3R_5_4470001 chr3R_4470001 RAL-405 1846 chr3R 4472133 4472153 chr3R 4472210 4472250 5 93 7.5 6.0 6.8 0.6 117 chr3R 4472133 intron CG31523 - chr3R 4472192 intron CG31523 - chr3R 4472250 intron CG31523 - chr3R_5_4470001 chr3R_4470001 RAL-405 1847 chr3R 4634319 4634365 chr3R 4634426 4634467 13 104 5.0 6.5 5.8 1.9 148 chr3R 4634319 intergenic not near genes chr3R 4634393 intergenic not near genes chr3R 4634467 intergenic not near genes chr3R_13_4630001 chr3R_4630001 RAL-405 1848 chr3R 4657284 4657313 chr3R 4657392 4657422 12 105 3.0 8.0 5.5 1.8 138 chr3R 4657284 intron spartin + chr3R 4657353 intron spartin + chr3R 4657422 intron spartin + chr3R_12_4655001 chr3R_4655001 RAL-405 1849 chr3R 4665068 4665083 chr3R 4665163 4665173 4 96 7.5 6.5 7.0 0.5 105 chr3R 4665068 intron CG43427 + chr3R 4665120 intron CG43427 + chr3R 4665173 intron CG43427 + chr3R_4_4665001 chr3R_4665001 RAL-405 1850 chr3R 4665086 4665099 chr3R 4665155 4665199 6 93 5.0 5.0 5.0 1.0 113 chr3R 4665086 intron CG43427 + chr3R 4665142 intron CG43427 + chr3R 4665199 intron CG43427 + chr3R_6_4665001 chr3R_4665001 RAL-405 1851 chr3R 4683160 4683208 chr3R 4684939 4684967 S-element 11 1775 7.5 4.0 5.8 1.6 1807 chr3R 4683160 intron CG43427 + chr3R 4684064 intron CG43427 + chr3R 4684967 intron CG43427 + chr3R_11_4680001 chr3R_4680001 RAL-405 1852 chr3R 4736854 4736874 chr3R 4736981 4737000 12 121 47.0 38.0 42.5 0.3 146 chr3R 4736854 intron tacc - chr3R 4736927 intron tacc - chr3R 4737000 intron tacc - chr3R_12_4735001 chr3R_4735001 RAL-405 1853 chr3R 4753230 4753266 chr3R 4757543 4757579 F-element 9 4316 6.5 4.0 5.2 1.5 4349 chr3R 4753230 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757579 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-405 1854 chr3R 4769156 4769191 chr3R 4769236 4769289 17 90 3.0 3.5 3.2 4.0 133 chr3R 4769156 intron,intron atms +,CG44098 - chr3R 4769222 intron,intron atms +,CG44098 - chr3R 4769289 intron,intron atms +,CG44098 - chr3R_17_4765001 chr3R_4765001 RAL-405 1855 chr3R 4784518 4784545 chr3R 4791386 4791413 7 6865 5.5 15.5 10.5 0.6 6895 chr3R 4784518 exon CG17387 - chr3R 4787966 exon ctrip - chr3R 4791413 exon ctrip - chr3R_7_4785001 chr3R_4785001 RAL-405 1856 chr3R 4887459 4887504 chr3R 4894854 4894869 rover 10 7382 3.5 2.5 3.0 2.5 7410 chr3R 4887459 intergenic not near genes chr3R 4891164 intergenic not near genes chr3R 4894869 intergenic not near genes chr3R_10_4890001 chr3R_4890001 RAL-405 1857 chr3R 4922324 4922362 chr3R 4922423 4922454 6 94 3.0 1.5 2.2 1.9 130 chr3R 4922324 intron Cdep + chr3R 4922389 intron Cdep + chr3R 4922454 intron Cdep + chr3R_6_4920001 chr3R_4920001 RAL-405 1858 chr3R 4965994 4966030 chr3R 4966106 4966142 8 108 7.5 4.5 6.0 1.1 148 chr3R 4965994 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966142 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-405 1859 chr3R 4979964 4980017 chr3R 4980067 4980083 10 88 1.5 1.5 1.5 4.0 119 chr3R 4979964 intergenic not near genes chr3R 4980024 intergenic not near genes chr3R 4980083 intergenic not near genes chr3R_10_4980001 chr3R_4980001 RAL-405 1860 chr3R 5045829 5045839 chr3R 5052951 5052961 HMS-Beagle 7 7121 13.0 4.0 8.5 0.7 7132 chr3R 5045829 3` UTR CR43635 - chr3R 5049395 intergenic not near genes chr3R 5052961 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-405 1861 chr3R 5045844 5045867 chr3R 5052946 5052989 HMS-Beagle 6 7117 8.5 4.0 6.2 0.8 7145 chr3R 5045844 intron CR43635 - chr3R 5049416 intergenic not near genes chr3R 5052989 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-405 1862 chr3R 5067968 5068008 chr3R 5073500 5073545 mdg3 15 5526 10.5 6.0 8.2 1.6 5577 chr3R 5067968 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073545 intergenic not near genes chr3R_15_5070001 chr3R_5070001 RAL-405 1863 chr3R 5107271 5107318 chr3R 5107695 5107736 12 417 1.0 2.0 1.5 4.8 465 chr3R 5107271 intergenic not near genes chr3R 5107504 intergenic not near genes chr3R 5107736 intergenic not near genes chr3R_12_5105001 chr3R_5105001 RAL-405 1864 chr3R 5158129 5158174 chr3R 5158237 5158276 12 108 8.5 2.0 5.2 1.9 147 chr3R 5158129 intron dpr16 + chr3R 5158202 intron dpr16 + chr3R 5158276 intron dpr16 + chr3R_12_5155001 chr3R_5155001 RAL-405 1865 chr3R 5191375 5191399 chr3R 5191631 5191660 7 258 25.5 24.0 24.8 0.3 285 chr3R 5191375 intron cno - chr3R 5191518 intron cno - chr3R 5191660 intron cno - chr3R_7_5190001 chr3R_5190001 RAL-405 1866 chr3R 5278078 5278120 chr3R 5278169 5278175 14 95 5.0 5.5 5.2 2.3 97 chr3R 5278078 intron mtd - chr3R 5278126 intron mtd - chr3R 5278175 intron mtd - chr3R_14_5275001 chr3R_5275001 RAL-405 1867 chr3R 5338399 5338426 chr3R 5343571 5343583 Rt1c 9 5185 8.5 4.0 6.2 1.2 5184 chr3R 5338399 intron mtd - chr3R 5340991 intron mtd - chr3R 5343583 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-405 1868 chr3R 5399058 5399085 chr3R 5399129 5399163 6 59 4.0 4.5 4.2 1.2 105 chr3R 5399058 3` UTR,exon CG1172 +,Or83a - chr3R 5399110 3` UTR,exon CG1172 +,Or83a - chr3R 5399163 3` UTR,exon CG1172 +,Or83a - chr3R_6_5395001 chr3R_5395001 RAL-405 1869 chr3R 5445950 5445990 chr3R 5452430 5452445 Burdock 12 6476 7.0 4.0 5.5 1.8 6495 chr3R 5445950 intron CG14669 + chr3R 5449198 intron CG14669 + chr3R 5452445 intron CG14669 + chr3R_12_5445001 chr3R_5445001 RAL-405 1870 chr3R 5454780 5454813 chr3R 5458102 5458145 12 3329 21.5 33.5 27.5 0.4 3365 chr3R 5454780 intron CG14669 + chr3R 5456462 3` UTR CG14669 + chr3R 5458145 3` UTR CG14669 + chr3R_12_5455001 chr3R_5455001 RAL-405 1871 chr3R 5463906 5463926 chr3R 5464037 5464054 9 144 3.0 4.5 3.8 1.9 148 chr3R 5463906 intron PEK - chr3R 5463980 intron PEK - chr3R 5464054 intron PEK - chr3R_9_5460001 chr3R_5460001 RAL-405 1872 chr3R 5480220 5480234 chr3R 5480316 5480330 9 96 11.5 11.0 11.2 0.7 110 chr3R 5480220 intron,3` UTR Hcs +,ksr - chr3R 5480275 intron,3` UTR Hcs +,ksr - chr3R 5480330 intron,3` UTR Hcs +,ksr - chr3R_9_5480001 chr3R_5480001 RAL-405 1873 chr3R 5696134 5696146 chr3R 5696225 5696237 4 95 2.5 3.5 3.0 1.0 103 chr3R 5696134 intron plx + chr3R 5696186 intron plx + chr3R 5696237 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-405 1874 chr3R 5746003 5746043 chr3R 5746259 5746304 pogo 10 255 1.0 3.0 2.0 3.3 301 chr3R 5746003 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746304 3` UTR Madm + chr3R_10_5745001 chr3R_5745001 RAL-405 1875 chr3R 5746995 5747031 chr3R 5753206 5753226 diver 11 6206 11.0 7.5 9.2 1.1 6231 chr3R 5746995 intergenic Madm + chr3R 5750110 intergenic not near genes chr3R 5753226 intergenic CG2091 - chr3R_11_5750001 chr3R_5750001 RAL-405 1876 chr3R 5769222 5769250 chr3R 5769330 5769344 6 105 5.5 0.5 3.0 1.5 122 chr3R 5769222 intron CG2082 - chr3R 5769283 intron CG2082 - chr3R 5769344 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-405 1877 chr3R 5809093 5809139 chr3R 5809354 5809400 pogo 11 257 3.0 7.5 5.2 1.8 307 chr3R 5809093 3` UTR CG11000 + chr3R 5809246 3` UTR CG11000 + chr3R 5809400 3` UTR CG11000 + chr3R_11_5805001 chr3R_5805001 RAL-405 1878 chr3R 5822368 5822407 chr3R 5823555 5823584 1360 15 1182 5.0 6.0 5.5 2.3 1216 chr3R 5822368 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823584 3` UTR CG2023 - chr3R_15_5820001 chr3R_5820001 RAL-405 1879 chr3R 5846862 5846910 chr3R 5846953 5846955 14 90 8.0 6.0 7.0 1.8 93 chr3R 5846862 intergenic CG1213 +,CG14676 + chr3R 5846908 intergenic CG14676 +,CG1213 + chr3R 5846955 intergenic CG14676 +,CG1213 + chr3R_14_5845001 chr3R_5845001 RAL-405 1880 chr3R 5900776 5900814 chr3R 5900877 5900920 9 101 7.5 4.0 5.8 1.3 144 chr3R 5900776 intron CG34113 - chr3R 5900848 intron CG34113 - chr3R 5900920 intron CG34113 - chr3R_9_5900001 chr3R_5900001 RAL-405 1881 chr3R 5927557 5927591 chr3R 5927799 5927844 pogo 14 250 2.5 5.5 4.0 2.8 287 chr3R 5927557 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927844 intron CG34113 - chr3R_14_5925001 chr3R_5925001 RAL-405 1882 chr3R 5989350 5989369 chr3R 5989431 5989449 5 84 1.0 1.5 1.2 2.3 99 chr3R 5989350 5` UTR CR44927 + chr3R 5989400 5` UTR CR44927 + chr3R 5989449 5` UTR CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-405 1883 chr3R 6029947 6029981 chr3R 6030163 6030201 5 210 4.0 7.0 5.5 0.8 254 chr3R 6029947 intergenic not near genes chr3R 6030074 intergenic not near genes chr3R 6030201 intergenic not near genes chr3R_5_6030001 chr3R_6030001 RAL-405 1884 chr3R 6048448 6048465 chr3R 6048536 6048568 4 88 6.5 3.0 4.8 0.7 120 chr3R 6048448 intergenic not near genes chr3R 6048508 intergenic not near genes chr3R 6048568 intergenic not near genes chr3R_4_6045001 chr3R_6045001 RAL-405 1885 chr3R 6121167 6121172 chr3R 6121400 6121410 BS 4 236 0.0 15.0 7.5 0.5 243 chr3R 6121167 intergenic not near genes chr3R 6121288 intergenic not near genes chr3R 6121410 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-405 1886 chr3R 6175156 6175207 chr3R 6182443 6182469 HMS-Beagle2 24 7281 4.0 3.0 3.5 5.3 7313 chr3R 6175156 intergenic Osi1 + chr3R 6178812 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_24_6175001 chr3R_6175001 RAL-405 1887 chr3R 6188879 6188916 chr3R 6188976 6189002 10 91 6.0 2.5 4.2 1.9 123 chr3R 6188879 intron NPFR + chr3R 6188940 intron NPFR + chr3R 6189002 5` UTR NPFR + chr3R_10_6185001 chr3R_6185001 RAL-405 1888 chr3R 6191156 6191198 chr3R 6191250 6191298 15 96 3.0 2.5 2.8 3.9 142 chr3R 6191156 intron NPFR + chr3R 6191227 intron NPFR + chr3R 6191298 intron NPFR + chr3R_15_6190001 chr3R_6190001 RAL-405 1889 chr3R 6334778 6334811 chr3R 6334875 6334894 12 108 2.5 3.5 3.0 3.0 116 chr3R 6334778 intergenic not near genes chr3R 6334836 intergenic not near genes chr3R 6334894 intergenic Osi19 + chr3R_12_6330001 chr3R_6330001 RAL-405 1890 chr3R 6510009 6510054 chr3R 6515110 6515140 jockey 13 5095 8.0 7.5 7.8 1.5 5131 chr3R 6510009 intergenic not near genes chr3R 6512574 intergenic not near genes chr3R 6515140 intergenic not near genes chr3R_13_6510001 chr3R_6510001 RAL-405 1891 chr3R 6578861 6578911 chr3R 6579001 6579041 7 139 5.0 1.5 3.2 1.7 180 chr3R 6578861 intron dpr11 - chr3R 6578951 intron dpr11 - chr3R 6579041 intron dpr11 - chr3R_7_6575001 chr3R_6575001 RAL-405 1892 chr3R 6737499 6737522 chr3R 6739291 6739309 Doc 5 1800 0.0 2.5 1.2 2.3 1810 chr3R 6737499 intron pb - chr3R 6738404 intron pb - chr3R 6739309 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-405 1893 chr3R 6804179 6804184 chr3R 6804308 6804313 4 129 6.5 5.0 5.8 0.6 134 chr3R 6804179 intergenic not near genes chr3R 6804246 intergenic not near genes chr3R 6804313 intergenic not near genes chr3R_4_6800001 chr3R_6800001 RAL-405 1894 chr3R 6804186 6804227 chr3R 6804305 6804356 9 127 5.5 4.5 5.0 1.5 170 chr3R 6804186 intergenic not near genes chr3R 6804271 intergenic not near genes chr3R 6804356 intergenic not near genes chr3R_9_6800001 chr3R_6800001 RAL-405 1895 chr3R 6856366 6856398 chr3R 6856503 6856535 16 135 3.5 3.5 3.5 3.6 169 chr3R 6856366 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856535 intergenic not near genes chr3R_16_6855001 chr3R_6855001 RAL-405 1896 chr3R 6862201 6862237 chr3R 6862308 6862344 10 104 3.0 8.0 5.5 1.5 143 chr3R 6862201 intergenic not near genes chr3R 6862272 intergenic not near genes chr3R 6862344 intergenic not near genes chr3R_10_6860001 chr3R_6860001 RAL-405 1897 chr3R 6862239 6862252 chr3R 6862306 6862344 8 99 1.5 8.0 4.8 1.4 105 chr3R 6862239 intergenic not near genes chr3R 6862292 intergenic not near genes chr3R 6862344 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-405 1898 chr3R 6891260 6891337 chr3R 6891313 6891555 9 183 1.0 0.5 0.8 5.0 295 chr3R 6891260 intergenic not near genes chr3R 6891408 intergenic not near genes chr3R 6891555 intergenic not near genes chr3R_9_6890001 chr3R_6890001 RAL-405 1899 chr3R 6918043 6918094 chr3R 6918140 6918172 17 95 6.5 3.0 4.8 2.9 129 chr3R 6918043 intron Antp - chr3R 6918108 intron Antp - chr3R 6918172 intron Antp - chr3R_17_6915001 chr3R_6915001 RAL-405 1900 chr3R 7026858 7026889 chr3R 7026944 7026964 9 91 3.0 2.5 2.8 2.4 106 chr3R 7026858 intergenic not near genes chr3R 7026911 intergenic not near genes chr3R 7026964 intergenic not near genes chr3R_9_7025001 chr3R_7025001 RAL-405 1901 chr3R 7103296 7103313 chr3R 7103371 7103404 7 88 5.0 6.5 5.8 1.0 108 chr3R 7103296 intron Alh - chr3R 7103350 intron Alh - chr3R 7103404 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-405 1902 chr3R 7126485 7126533 chr3R 7126600 7126648 19 105 7.0 7.0 7.0 2.4 163 chr3R 7126485 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126648 3` UTR CG10068 - chr3R_19_7125001 chr3R_7125001 RAL-405 1903 chr3R 7173673 7173709 chr3R 7173758 7173776 15 93 2.5 4.5 3.5 3.3 103 chr3R 7173673 intron sas + chr3R 7173724 intron sas + chr3R 7173776 intron sas + chr3R_15_7170001 chr3R_7170001 RAL-405 1904 chr3R 7217456 7217487 chr3R 7217687 7217728 16 232 4.5 4.5 4.5 2.9 272 chr3R 7217456 intergenic CG14605 -,CG14606 - chr3R 7217592 intergenic CG14605 - chr3R 7217728 3` UTR CG14605 - chr3R_16_7215001 chr3R_7215001 RAL-405 1905 chr3R 7310323 7310365 chr3R 7310432 7310474 8 108 5.0 3.5 4.2 1.5 151 chr3R 7310323 intergenic not near genes chr3R 7310398 intergenic not near genes chr3R 7310474 intergenic not near genes chr3R_8_7310001 chr3R_7310001 RAL-405 1906 chr3R 7404946 7404954 chr3R 7405033 7405049 5 91 0.0 4.0 2.0 1.7 103 chr3R 7404946 intergenic not near genes chr3R 7404998 intergenic not near genes chr3R 7405049 intergenic not near genes chr3R_5_7400001 chr3R_7400001 RAL-405 1907 chr3R 7447972 7448011 chr3R 7448070 7448099 17 95 3.5 6.0 4.8 2.9 127 chr3R 7447972 intergenic not near genes chr3R 7448036 intergenic not near genes chr3R 7448099 intergenic not near genes chr3R_17_7445001 chr3R_7445001 RAL-405 1908 chr3R 7578715 7578768 chr3R 7578884 7578937 10 165 6.0 1.5 3.8 2.1 222 chr3R 7578715 intron CG34127 - chr3R 7578826 intron CG34127 - chr3R 7578937 intron CG34127 - chr3R_10_7575001 chr3R_7575001 RAL-405 1909 chr3R 7584411 7584447 chr3R 7584606 7584647 13 199 4.0 7.0 5.5 2.0 236 chr3R 7584411 intron CG34127 - chr3R 7584529 intron CG34127 - chr3R 7584647 intron CG34127 - chr3R_13_7580001 chr3R_7580001 RAL-405 1910 chr3R 7628298 7628320 chr3R 7628447 7628477 5 147 5.5 3.5 4.5 0.9 179 chr3R 7628298 intron CG34127 - chr3R 7628388 intron CG34127 - chr3R 7628477 intron CG34127 - chr3R_5_7625001 chr3R_7625001 RAL-405 1911 chr3R 7635663 7635682 chr3R 7635736 7635784 6 94 3.0 8.5 5.8 0.9 121 chr3R 7635663 intron CG34127 - chr3R 7635724 intron CG34127 - chr3R 7635784 intron CG34127 - chr3R_6_7635001 chr3R_7635001 RAL-405 1912 chr3R 7694563 7694604 chr3R 7713639 7713685 invader3 15 19073 7.0 4.5 5.8 2.2 19122 chr3R 7694563 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713685 intergenic not near genes chr3R_15_7700001 chr3R_7700001 RAL-405 1913 chr3R 7729471 7729497 chr3R 7737402 7737454 Stalker2 5 7948 7.0 5.5 6.2 0.7 7983 chr3R 7729471 intergenic not near genes chr3R 7733462 intergenic not near genes chr3R 7737454 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-405 1914 chr3R 7774396 7774422 chr3R 7775491 7775534 6 1104 2.5 3.5 3.0 1.5 1138 chr3R 7774396 intergenic not near genes chr3R 7774965 intergenic not near genes chr3R 7775534 intergenic not near genes chr3R_6_7770001 chr3R_7770001 RAL-405 1915 chr3R 7793325 7793363 chr3R 7793421 7793460 8 96 9.0 2.0 5.5 1.2 135 chr3R 7793325 3` UTR CG10086 + chr3R 7793392 3` UTR CG10086 + chr3R 7793460 3` UTR CG10086 + chr3R_8_7790001 chr3R_7790001 RAL-405 1916 chr3R 7840916 7840950 chr3R 7841080 7841116 7 162 3.5 8.5 6.0 1.0 200 chr3R 7840916 intron CG34384 + chr3R 7841016 intron CG34384 + chr3R 7841116 intron CG34384 + chr3R_7_7840001 chr3R_7840001 RAL-405 1917 chr3R 7840953 7840961 chr3R 7841072 7841122 6 156 2.5 5.5 4.0 1.2 169 chr3R 7840953 intron CG34384 + chr3R 7841038 intron CG34384 + chr3R 7841122 intron CG34384 + chr3R_6_7840001 chr3R_7840001 RAL-405 1918 chr3R 7849621 7849678 chr3R 7850808 7850840 1360 14 1177 2.0 6.5 4.2 2.7 1219 chr3R 7849621 intron CG34384 + chr3R 7850230 intron CG34384 + chr3R 7850840 intron CG34384 + chr3R_14_7850001 chr3R_7850001 RAL-405 1919 chr3R 7773344 7773344 chr3R 7890530 7890535 5 117190 28.0 7.5 17.8 0.3 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_5_7830001 chr3R_7830001 RAL-405 1920 chr3R 7973300 7973331 chr3R 7974381 7974413 1360 12 1080 6.5 5.0 5.8 1.8 1113 chr3R 7973300 intergenic not near genes chr3R 7973856 intergenic not near genes chr3R 7974413 3` UTR CD98hc - chr3R_12_7970001 chr3R_7970001 RAL-405 1921 chr3R 8040650 8040661 chr3R 8040755 8040766 9 103 11.5 10.5 11.0 0.8 116 chr3R 8040650 intergenic not near genes chr3R 8040708 intergenic not near genes chr3R 8040766 intergenic CG43060 + chr3R_9_8040001 chr3R_8040001 RAL-405 1922 chr3R 8040667 8040679 chr3R 8040742 8040774 5 95 9.0 7.5 8.2 0.5 107 chr3R 8040667 intergenic not near genes chr3R 8040720 intergenic not near genes chr3R 8040774 intergenic CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-405 1923 chr3R 8041193 8041201 chr3R 8041309 8041314 5 116 20.5 21.5 21.0 0.2 121 chr3R 8041193 intergenic CG43060 + chr3R 8041254 exon CG43060 + chr3R 8041314 intron CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-405 1924 chr3R 8090251 8090302 chr3R 8090448 8090499 14 191 7.0 6.0 6.5 1.9 248 chr3R 8090251 5` UTR CR44330 + chr3R 8090375 intergenic CR44330 + chr3R 8090499 intergenic CR44330 + chr3R_14_8090001 chr3R_8090001 RAL-405 1925 chr3R 8094390 8094421 chr3R 8099715 8099746 Transpac 15 5324 13.0 8.5 10.8 1.3 5356 chr3R 8094390 intron CG7900 + chr3R 8097068 intron CG7900 + chr3R 8099746 intron CG7900 + chr3R_15_8095001 chr3R_8095001 RAL-405 1926 chr3R 8094422 8094435 chr3R 8099712 8099760 Transpac 7 5319 8.0 8.5 8.2 0.8 5338 chr3R 8094422 intron CG7900 + chr3R 8097091 intron CG7900 + chr3R 8099760 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-405 1927 chr3R 8207545 8207581 chr3R 8208398 8208446 F-element 4 859 2.5 2.0 2.2 1.2 901 chr3R 8207545 intergenic not near genes chr3R 8207996 intergenic not near genes chr3R 8208446 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-405 1928 chr3R 8247879 8247929 chr3R 8247981 8248026 15 99 5.0 7.0 6.0 2.1 147 chr3R 8247879 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8247952 intron,intron CG18749 +,CG33722 + chr3R 8248026 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_15_8245001 chr3R_8245001 RAL-405 1929 chr3R 8288053 8288094 chr3R 8288597 8288638 13 536 3.5 3.5 3.5 2.9 585 chr3R 8288053 exon CG11671 + chr3R 8288346 exon CG11671 + chr3R 8288638 intergenic CG11671 + chr3R_13_8285001 chr3R_8285001 RAL-405 1930 chr3R 8304227 8304271 chr3R 8304342 8304382 16 113 9.0 9.5 9.2 1.6 155 chr3R 8304227 3` UTR Sgt1 - chr3R 8304304 3` UTR Sgt1 - chr3R 8304382 3` UTR Sgt1 - chr3R_16_8300001 chr3R_8300001 RAL-405 1931 chr3R 8339246 8339247 chr3R 21907534 21907536 5 13568288 12.0 10.0 11.0 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-405 1932 chr3R 8534785 8534811 chr3R 8535042 8535088 9 272 1.5 3.0 2.2 2.8 303 chr3R 8534785 intergenic not near genes chr3R 8534936 intergenic not near genes chr3R 8535088 intergenic not near genes chr3R_9_8530001 chr3R_8530001 RAL-405 1933 chr3R 8570480 8570509 chr3R 8575146 8575180 HMS-Beagle 5 4677 2.0 2.0 2.0 1.7 4700 chr3R 8570480 intergenic not near genes chr3R 8572830 intergenic not near genes chr3R 8575180 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-405 1934 chr3R 8601757 8601786 chr3R 8610930 8610957 roo 4 9170 6.0 4.5 5.2 0.6 9200 chr3R 8601757 intron 5-HT2B + chr3R 8606357 intron 5-HT2B + chr3R 8610957 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-405 1935 chr3R 8614792 8614805 chr3R 8614990 8615003 4 204 0.5 4.5 2.5 1.1 211 chr3R 8614792 intron 5-HT2B + chr3R 8614898 intron 5-HT2B + chr3R 8615003 intron 5-HT2B + chr3R_4_8610001 chr3R_8610001 RAL-405 1936 chr3R 8621524 8621574 chr3R 8621620 8621633 6 72 2.5 3.0 2.8 1.6 109 chr3R 8621524 intron 5-HT2B + chr3R 8621578 intron 5-HT2B + chr3R 8621633 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-405 1937 chr3R 8685283 8685315 chr3R 8685398 8685425 12 118 4.0 7.0 5.5 1.8 142 chr3R 8685283 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685425 intron CR44937 - chr3R_12_8685001 chr3R_8685001 RAL-405 1938 chr3R 8707338 8707379 chr3R 8709799 8709840 jockey 6 2460 2.5 2.0 2.2 1.9 2502 chr3R 8707338 intergenic not near genes chr3R 8708589 intergenic not near genes chr3R 8709840 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-405 1939 chr3R 8917869 8917912 chr3R 8917969 8917982 19 95 5.0 3.5 4.2 3.7 113 chr3R 8917869 intron pyd - chr3R 8917926 intron pyd - chr3R 8917982 intron pyd - chr3R_19_8915001 chr3R_8915001 RAL-405 1940 chr3R 8932855 8932910 chr3R 8933108 8933137 12 244 5.5 2.5 4.0 2.4 282 chr3R 8932855 intergenic not near genes chr3R 8932996 intergenic not near genes chr3R 8933137 intergenic not near genes chr3R_12_8930001 chr3R_8930001 RAL-405 1941 chr3R 8970368 8970414 chr3R 8970850 8970896 13 477 1.5 2.5 2.0 4.3 528 chr3R 8970368 intergenic not near genes chr3R 8970632 intergenic not near genes chr3R 8970896 intergenic not near genes chr3R_13_8970001 chr3R_8970001 RAL-405 1942 chr3R 9036693 9036745 chr3R 9036809 9036861 21 115 2.0 2.5 2.2 6.6 168 chr3R 9036693 intron neur - chr3R 9036777 intron neur - chr3R 9036861 intron neur - chr3R_21_9035001 chr3R_9035001 RAL-405 1943 chr3R 9066197 9066207 chr3R 9066268 9066303 4 88 6.0 8.5 7.2 0.5 106 chr3R 9066197 exon Ada + chr3R 9066250 exon Ada + chr3R 9066303 3` UTR Ada + chr3R_4_9065001 chr3R_9065001 RAL-405 1944 chr3R 9066213 9066223 chr3R 9066267 9066319 5 81 4.5 8.5 6.5 0.7 106 chr3R 9066213 exon Ada + chr3R 9066266 3` UTR Ada + chr3R 9066319 intergenic Ada +,pum - chr3R_5_9065001 chr3R_9065001 RAL-405 1945 chr3R 9066758 9066786 chr3R 9066863 9066891 4 105 6.5 3.0 4.8 0.7 133 chr3R 9066758 3` UTR pum - chr3R 9066824 3` UTR pum - chr3R 9066891 3` UTR pum - chr3R_4_9065001 chr3R_9065001 RAL-405 1946 chr3R 9085029 9085079 chr3R 9085376 9085376 6 328 2.0 1.0 1.5 2.4 347 chr3R 9085029 intron pum - chr3R 9085202 intron pum - chr3R 9085376 intron pum - chr3R_6_9085001 chr3R_9085001 RAL-405 1947 chr3R 9102274 9102308 chr3R 9102372 9102377 6 89 3.5 6.5 5.0 1.0 103 chr3R 9102274 intron pum - chr3R 9102326 intron pum - chr3R 9102377 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-405 1948 chr3R 9108856 9108880 chr3R 9108942 9108944 11 88 7.5 4.5 6.0 1.6 88 chr3R 9108856 intron pum - chr3R 9108900 intron pum - chr3R 9108944 intron pum - chr3R_11_9105001 chr3R_9105001 RAL-405 1949 chr3R 9146755 9146789 chr3R 9146858 9146893 4 103 3.5 2.0 2.8 1.1 138 chr3R 9146755 intron pum - chr3R 9146824 intron pum - chr3R 9146893 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-405 1950 chr3R 9278780 9278806 chr3R 9284039 9284086 Rt1a 10 5272 8.5 3.0 5.8 1.5 5306 chr3R 9278780 intergenic not near genes chr3R 9281433 intergenic not near genes chr3R 9284086 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-405 1951 chr3R 9299813 9299848 chr3R 9299980 9300020 12 166 5.5 5.0 5.2 1.9 207 chr3R 9299813 intron CG8861 - chr3R 9299916 intron CG8861 - chr3R 9300020 intron CG8861 - chr3R_12_9295001 chr3R_9295001 RAL-405 1952 chr3R 9319554 9319602 chr3R 9320008 9320057 jockey 13 449 4.5 3.0 3.8 2.7 503 chr3R 9319554 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320057 intron CG8861 - chr3R_13_9315001 chr3R_9315001 RAL-405 1953 chr3R 9361807 9361820 chr3R 9362068 9362081 pogo 5 259 15.0 11.0 13.0 0.4 274 chr3R 9361807 3` UTR CG45050 + chr3R 9361944 3` UTR CG45050 + chr3R 9362081 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-405 1954 chr3R 9361821 9361845 chr3R 9362065 9362087 pogo 8 255 8.0 11.0 9.5 0.8 266 chr3R 9361821 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362087 3` UTR CG45050 + chr3R_8_9360001 chr3R_9360001 RAL-405 1955 chr3R 9379127 9379176 chr3R 9379229 9379278 7 102 0.0 2.5 1.2 3.2 151 chr3R 9379127 intron FER - chr3R 9379202 intron FER - chr3R 9379278 intron FER - chr3R_7_9375001 chr3R_9375001 RAL-405 1956 chr3R 9382819 9382848 chr3R 9382959 9382991 8 141 0.5 6.5 3.5 1.8 172 chr3R 9382819 intron FER - chr3R 9382905 intron FER - chr3R 9382991 intron FER - chr3R_8_9380001 chr3R_9380001 RAL-405 1957 chr3R 9447454 9447460 chr3R 9447548 9447584 5 110 3.5 6.5 5.0 0.8 130 chr3R 9447454 intron ps + chr3R 9447519 intron ps + chr3R 9447584 intron ps + chr3R_5_9445001 chr3R_9445001 RAL-405 1958 chr3R 9601441 9601490 chr3R 9601579 9601618 12 132 4.0 5.5 4.8 2.1 177 chr3R 9601441 intron CG8312 + chr3R 9601530 intron CG8312 + chr3R 9601618 intron CG8312 + chr3R_12_9600001 chr3R_9600001 RAL-405 1959 chr3R 9867416 9867427 chr3R 9867577 9867578 6 158 13.5 4.0 8.8 0.6 162 chr3R 9867416 intron Teh1 - chr3R 9867497 intron Teh1 - chr3R 9867578 intron Teh1 - chr3R_6_9865001 chr3R_9865001 RAL-405 1960 chr3R 9905368 9905373 chr3R 9905512 9905517 4 144 11.0 0.5 5.8 0.6 149 chr3R 9905368 intron Glut4EF + chr3R 9905442 intron Glut4EF + chr3R 9905517 intron Glut4EF + chr3R_4_9905001 chr3R_9905001 RAL-405 1961 chr3R 10073757 10073800 chr3R 10073886 10073929 11 123 4.0 7.0 5.5 1.7 172 chr3R 10073757 3` UTR nerfin-2 + chr3R 10073843 3` UTR CG5361 - chr3R 10073929 exon CG5361 - chr3R_11_10070001 chr3R_10070001 RAL-405 1962 chr3R 10167489 10167495 chr3R 10167545 10167545 4 59 2.5 6.0 4.2 0.8 56 chr3R 10167489 intron Best1 - chr3R 10167517 intron Best1 - chr3R 10167545 intron Best1 - chr3R_4_10165001 chr3R_10165001 RAL-405 1963 chr3R 10171190 10171197 chr3R 10171289 10171302 4 103 18.0 8.0 13.0 0.3 112 chr3R 10171190 3` UTR CG12814 - chr3R 10171246 3` UTR CG12814 - chr3R 10171302 3` UTR CG12814 - chr3R_4_10170001 chr3R_10170001 RAL-405 1964 chr3R 10171199 10171235 chr3R 10171287 10171324 15 95 6.5 7.0 6.8 1.9 125 chr3R 10171199 3` UTR CG12814 - chr3R 10171262 3` UTR CG12814 - chr3R 10171324 3` UTR CG12814 - chr3R_15_10170001 chr3R_10170001 RAL-405 1965 chr3R 10172419 10172464 chr3R 10172526 10172566 19 101 3.5 2.0 2.8 5.0 147 chr3R 10172419 exon CG12814 - chr3R 10172492 intron CG12814 - chr3R 10172566 intron CG12814 - chr3R_19_10170001 chr3R_10170001 RAL-405 1966 chr3R 10183085 10183105 chr3R 10183182 10183187 6 93 7.0 4.0 5.5 0.9 102 chr3R 10183085 intron CG12814 - chr3R 10183136 intron CG12814 - chr3R 10183187 intron CG12814 - chr3R_6_10180001 chr3R_10180001 RAL-405 1967 chr3R 10193220 10193233 chr3R 10193303 10193312 5 92 7.0 1.5 4.2 1.0 92 chr3R 10193220 intron Syn + chr3R 10193266 intron Syn + chr3R 10193312 intron Syn + chr3R_5_10190001 chr3R_10190001 RAL-405 1968 chr3R 10231775 10231814 chr3R 10237372 10237410 mdg3 16 5594 6.5 8.0 7.2 2.0 5635 chr3R 10231775 intron CG42795 + chr3R 10234592 intron CG42795 + chr3R 10237410 intron CG42795 + chr3R_16_10230001 chr3R_10230001 RAL-405 1969 chr3R 10255362 10255381 chr3R 10260822 10260831 I-element 8 5457 13.5 4.5 9.0 0.8 5469 chr3R 10255362 3` UTR Sirt6 - chr3R 10258096 intron Sirt6 - chr3R 10260831 exon Sirt6 - chr3R_8_10255001 chr3R_10255001 RAL-405 1970 chr3R 10255383 10255385 chr3R 10260817 10260845 I-element 6 5452 12.5 4.0 8.2 0.7 5462 chr3R 10255383 exon Sirt6 - chr3R 10258114 intron Sirt6 - chr3R 10260845 exon Sirt6 - chr3R_6_10255001 chr3R_10255001 RAL-405 1971 chr3R 10265018 10265047 chr3R 10265124 10265143 4 97 4.0 7.0 5.5 0.6 125 chr3R 10265018 intron CG43143 + chr3R 10265080 intron CG43143 + chr3R 10265143 intron CG43143 + chr3R_4_10265001 chr3R_10265001 RAL-405 1972 chr3R 10277131 10277152 chr3R 10277226 10277237 7 94 11.0 7.5 9.2 0.7 106 chr3R 10277131 intron CG43143 + chr3R 10277184 intron CG43143 + chr3R 10277237 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-405 1973 chr3R 10277157 10277165 chr3R 10277215 10277265 5 92 8.0 5.0 6.5 0.7 108 chr3R 10277157 intron CG43143 + chr3R 10277211 intron CG43143 + chr3R 10277265 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-405 1974 chr3R 10308353 10308389 chr3R 10308449 10308495 17 102 5.5 1.5 3.5 3.8 142 chr3R 10308353 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308424 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308495 3` UTR CG6293 - chr3R_17_10305001 chr3R_10305001 RAL-405 1975 chr3R 10407435 10407488 chr3R 10407549 10407602 21 110 4.5 4.5 4.5 3.8 167 chr3R 10407435 intergenic CG6325 - chr3R 10407518 intergenic CG6325 - chr3R 10407602 intergenic CG6325 - chr3R_21_10405001 chr3R_10405001 RAL-405 1976 chr3R 10553832 10553867 chr3R 10553921 10553938 6 92 2.0 3.5 2.8 1.6 106 chr3R 10553832 intron hth - chr3R 10553885 intron hth - chr3R 10553938 intron hth - chr3R_6_10550001 chr3R_10550001 RAL-405 1977 chr3R 10651789 10651826 chr3R 10651908 10651935 11 114 12.5 7.5 10.0 1.0 146 chr3R 10651789 intergenic not near genes chr3R 10651862 intergenic not near genes chr3R 10651935 intergenic not near genes chr3R_11_10650001 chr3R_10650001 RAL-405 1978 chr3R 10724949 10724969 chr3R 10725041 10725051 4 91 2.0 5.0 3.5 0.9 102 chr3R 10724949 intergenic not near genes chr3R 10725000 intergenic not near genes chr3R 10725051 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-405 1979 chr3R 10724972 10724981 chr3R 10725040 10725069 4 88 1.5 5.0 3.2 1.0 97 chr3R 10724972 intergenic not near genes chr3R 10725020 intergenic not near genes chr3R 10725069 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-405 1980 chr3R 10727631 10727674 chr3R 10727731 10727762 5 91 3.0 3.0 3.0 1.2 131 chr3R 10727631 intergenic not near genes chr3R 10727696 intergenic not near genes chr3R 10727762 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-405 1981 chr3R 10730933 10730978 chr3R 10731247 10731277 9 311 5.5 3.5 4.5 1.6 344 chr3R 10730933 intergenic not near genes chr3R 10731105 intergenic not near genes chr3R 10731277 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-405 1982 chr3R 10737560 10737579 chr3R 10737941 10737965 8 382 11.0 8.0 9.5 0.8 405 chr3R 10737560 intergenic TkR86C - chr3R 10737762 3` UTR TkR86C - chr3R 10737965 3` UTR TkR86C - chr3R_8_10735001 chr3R_10735001 RAL-405 1983 chr3R 10737581 10737601 chr3R 10737935 10737979 10 372 6.0 6.5 6.2 1.4 398 chr3R 10737581 intergenic TkR86C - chr3R 10737780 3` UTR TkR86C - chr3R 10737979 3` UTR TkR86C - chr3R_10_10735001 chr3R_10735001 RAL-405 1984 chr3R 10752324 10752376 chr3R 10752496 10752512 20 166 6.0 6.0 6.0 2.9 188 chr3R 10752324 intergenic not near genes chr3R 10752418 intergenic not near genes chr3R 10752512 intergenic not near genes chr3R_20_10750001 chr3R_10750001 RAL-405 1985 chr3R 10774166 10774188 chr3R 10774252 10774279 11 92 3.0 12.5 7.8 1.2 113 chr3R 10774166 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R 10774222 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R 10774279 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R_11_10770001 chr3R_10770001 RAL-405 1986 chr3R 10785790 10785840 chr3R 10785889 10785939 15 94 12.0 6.5 9.2 1.5 149 chr3R 10785790 intron Rbp1 + chr3R 10785864 intron Rbp1 + chr3R 10785939 intron Rbp1 + chr3R_15_10785001 chr3R_10785001 RAL-405 1987 chr3R 10804166 10804207 chr3R 10811702 10811754 17.6 16 7547 4.0 6.0 5.0 2.7 7588 chr3R 10804166 intergenic CG14692 - chr3R 10807960 intergenic not near genes chr3R 10811754 3` UTR CG14693 - chr3R_16_10805001 chr3R_10805001 RAL-405 1988 chr3R 10886855 10886900 chr3R 10886955 10886985 9 98 1.5 3.0 2.2 2.8 130 chr3R 10886855 intron Leash + chr3R 10886920 intron Leash + chr3R 10886985 intron Leash + chr3R_9_10885001 chr3R_10885001 RAL-405 1989 chr3R 10919663 10919715 chr3R 10919761 10919813 11 91 9.0 4.5 6.8 1.4 150 chr3R 10919663 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919813 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-405 1990 chr3R 10920041 10920077 chr3R 10920125 10920165 14 88 3.5 3.0 3.2 3.3 124 chr3R 10920041 intergenic not near genes chr3R 10920103 intergenic not near genes chr3R 10920165 intergenic not near genes chr3R_14_10920001 chr3R_10920001 RAL-405 1991 chr3R 10952739 10952769 chr3R 10952842 10952862 4 98 2.5 2.0 2.2 1.2 123 chr3R 10952739 intergenic not near genes chr3R 10952800 intergenic not near genes chr3R 10952862 intergenic not near genes chr3R_4_10950001 chr3R_10950001 RAL-405 1992 chr3R 11024176 11024210 chr3R 11024278 11024300 9 108 2.0 2.5 2.2 2.8 124 chr3R 11024176 intron CG34114 + chr3R 11024238 intron CG34114 + chr3R 11024300 intron CG34114 + chr3R_9_11020001 chr3R_11020001 RAL-405 1993 chr3R 11030051 11030090 chr3R 11030165 11030204 15 108 9.0 1.0 5.0 2.5 153 chr3R 11030051 intron CG34114 + chr3R 11030128 intron CG34114 + chr3R 11030204 intron CG34114 + chr3R_15_11030001 chr3R_11030001 RAL-405 1994 chr3R 11065585 11065613 chr3R 11071246 11071287 297 4 5669 2.0 1.0 1.5 1.6 5702 chr3R 11065585 intergenic not near genes chr3R 11068436 intergenic not near genes chr3R 11071287 intergenic not near genes chr3R_4_11065001 chr3R_11065001 RAL-405 1995 chr3R 11085456 11085480 chr3R 11085553 11085572 6 95 5.0 7.0 6.0 0.9 116 chr3R 11085456 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085572 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-405 1996 chr3R 11085759 11085802 chr3R 11086074 11086101 7 309 1.5 0.5 1.0 3.5 342 chr3R 11085759 intergenic CR44940 - chr3R 11085930 intergenic CR44940 - chr3R 11086101 intergenic not near genes chr3R_7_11085001 chr3R_11085001 RAL-405 1997 chr3R 11167121 11167144 chr3R 11167331 11167369 9 217 2.5 7.0 4.8 1.6 248 chr3R 11167121 exon Ugt86De - chr3R 11167245 exon Ugt86De - chr3R 11167369 exon Ugt86De - chr3R_9_11165001 chr3R_11165001 RAL-405 1998 chr3R 11197972 11198008 chr3R 11198081 11198127 9 111 6.0 1.0 3.5 2.0 155 chr3R 11197972 intron cu + chr3R 11198050 intron cu + chr3R 11198127 intron cu + chr3R_9_11195001 chr3R_11195001 RAL-405 1999 chr3R 11342542 11342564 chr3R 11342638 11342660 5 96 4.0 4.0 4.0 1.0 118 chr3R 11342542 intron pros + chr3R 11342601 intron pros + chr3R 11342660 intron pros + chr3R_5_11340001 chr3R_11340001 RAL-405 2000 chr3R 11379241 11379258 chr3R 11388395 11388433 roo 10 9167 6.5 3.5 5.0 1.7 9192 chr3R 11379241 intron pros + chr3R 11383837 intron pros + chr3R 11388433 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-405 2001 chr3R 11455563 11455600 chr3R 11455704 11455746 16 144 5.5 4.5 5.0 2.7 183 chr3R 11455563 intron,intron CG17230 +,PGRP-LB - chr3R 11455654 intron,intron CG17230 +,PGRP-LB - chr3R 11455746 intron,intron CG17230 +,PGRP-LB - chr3R_16_11455001 chr3R_11455001 RAL-405 2002 chr3R 11461247 11461296 chr3R 11461347 11461396 7 96 1.0 3.0 2.0 2.3 149 chr3R 11461247 intron CG17230 + chr3R 11461322 intron CG17230 + chr3R 11461396 intron CG17230 + chr3R_7_11460001 chr3R_11460001 RAL-405 2003 chr3R 11468915 11468949 chr3R 11469006 11469045 5 98 0.5 0.5 0.5 3.3 130 chr3R 11468915 intergenic not near genes chr3R 11468980 intergenic not near genes chr3R 11469045 intergenic not near genes chr3R_5_11465001 chr3R_11465001 RAL-405 2004 chr3R 11549804 11549808 chr3R 11549902 11549906 4 98 10.5 9.0 9.8 0.4 102 chr3R 11549804 intergenic not near genes chr3R 11549855 intergenic not near genes chr3R 11549906 intergenic not near genes chr3R_4_11545001 chr3R_11545001 RAL-405 2005 chr3R 11664775 11664811 chr3R 11664887 11664918 6 104 9.5 3.0 6.2 0.8 143 chr3R 11664775 intron CG42327 + chr3R 11664846 intron CG42327 + chr3R 11664918 intron CG42327 + chr3R_6_11660001 chr3R_11660001 RAL-405 2006 chr3R 11694707 11694721 chr3R 11694820 11694834 6 113 14.5 6.0 10.2 0.5 127 chr3R 11694707 intergenic Fer3 - chr3R 11694770 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-405 2007 chr3R 11694722 11694751 chr3R 11694816 11694864 14 98 7.0 6.0 6.5 1.9 142 chr3R 11694722 intergenic Fer3 - chr3R 11694793 intergenic Fer3 - chr3R 11694864 intergenic not near genes chr3R_14_11690001 chr3R_11690001 RAL-405 2008 chr3R 11734160 11734174 chr3R 11734289 11734297 4 128 2.5 7.0 4.8 0.7 137 chr3R 11734160 intergenic not near genes chr3R 11734228 intergenic not near genes chr3R 11734297 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-405 2009 chr3R 11834147 11834198 chr3R 11834249 11834279 7 97 4.5 4.5 4.5 1.3 132 chr3R 11834147 intron CG6959 - chr3R 11834213 intron CG6959 - chr3R 11834279 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-405 2010 chr3R 11919290 11919337 chr3R 11919397 11919408 6 88 3.5 4.5 4.0 1.2 118 chr3R 11919290 intron Cad87A - chr3R 11919349 intron Cad87A - chr3R 11919408 intron Cad87A - chr3R_6_11915001 chr3R_11915001 RAL-405 2011 chr3R 11957838 11957840 chr3R 11958141 11958143 S-element 4 303 14.0 0.5 7.2 0.5 305 chr3R 11957838 intergenic not near genes chr3R 11957990 intergenic not near genes chr3R 11958143 intergenic not near genes chr3R_4_11955001 chr3R_11955001 RAL-405 2012 chr3R 11957842 11957867 chr3R 11958140 11958170 S-element 7 301 5.0 0.5 2.8 1.8 328 chr3R 11957842 intergenic not near genes chr3R 11958006 intergenic not near genes chr3R 11958170 intergenic not near genes chr3R_7_11955001 chr3R_11955001 RAL-405 2013 chr3R 12022863 12022916 chr3R 12025060 12025113 pogo 11 2192 3.5 6.5 5.0 1.8 2250 chr3R 12022863 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025113 intergenic not near genes chr3R_11_12020001 chr3R_12020001 RAL-405 2014 chr3R 12045158 12045202 chr3R 12045254 12045288 16 90 5.5 6.0 5.8 2.4 130 chr3R 12045158 intergenic not near genes chr3R 12045223 intergenic not near genes chr3R 12045288 intergenic not near genes chr3R_16_12045001 chr3R_12045001 RAL-405 2015 chr3R 12080847 12080897 chr3R 12080944 12080970 11 91 2.5 3.0 2.8 2.9 123 chr3R 12080847 intron CG14741 - chr3R 12080908 intron CG14741 - chr3R 12080970 intron CG14741 - chr3R_11_12080001 chr3R_12080001 RAL-405 2016 chr3R 12247127 12247172 chr3R 12247231 12247239 15 99 3.5 4.5 4.0 3.0 112 chr3R 12247127 intergenic not near genes chr3R 12247183 intergenic not near genes chr3R 12247239 intergenic not near genes chr3R_15_12245001 chr3R_12245001 RAL-405 2017 chr3R 12299784 12299832 chr3R 12299897 12299940 20 112 7.0 3.5 5.2 3.2 156 chr3R 12299784 intron svp + chr3R 12299862 intron svp + chr3R 12299940 intron svp + chr3R_20_12295001 chr3R_12295001 RAL-405 2018 chr3R 12314223 12314235 chr3R 12314357 12314369 5 134 7.5 14.5 11.0 0.4 146 chr3R 12314223 intergenic not near genes chr3R 12314296 intergenic not near genes chr3R 12314369 intergenic not near genes chr3R_5_12310001 chr3R_12310001 RAL-405 2019 chr3R 12314237 12314260 chr3R 12314342 12314374 10 119 4.0 10.0 7.0 1.2 137 chr3R 12314237 intergenic not near genes chr3R 12314306 intergenic not near genes chr3R 12314374 intergenic not near genes chr3R_10_12310001 chr3R_12310001 RAL-405 2020 chr3R 12328160 12328193 chr3R 12328276 12328316 5 118 4.5 1.5 3.0 1.2 156 chr3R 12328160 intergenic CR45584 + chr3R 12328238 intergenic CR45584 + chr3R 12328316 intergenic CR45584 + chr3R_5_12325001 chr3R_12325001 RAL-405 2021 chr3R 12344116 12344158 chr3R 12344213 12344230 9 87 3.5 6.5 5.0 1.5 114 chr3R 12344116 intergenic not near genes chr3R 12344173 intergenic not near genes chr3R 12344230 intergenic not near genes chr3R_9_12340001 chr3R_12340001 RAL-405 2022 chr3R 12436435 12436480 chr3R 12436542 12436577 6 93 3.0 3.5 3.2 1.4 142 chr3R 12436435 exon Desat2 + chr3R 12436506 exon Desat2 + chr3R 12436577 exon Desat2 + chr3R_6_12435001 chr3R_12435001 RAL-405 2023 chr3R 12520695 12520720 chr3R 12520793 12520816 4 102 2.5 4.5 3.5 0.9 121 chr3R 12520695 intron Octbeta3R - chr3R 12520756 intron Octbeta3R - chr3R 12520816 intron Octbeta3R - chr3R_4_12520001 chr3R_12520001 RAL-405 2024 chr3R 12543594 12543619 chr3R 12543704 12543729 8 108 9.5 4.5 7.0 1.0 135 chr3R 12543594 intron Octbeta3R - chr3R 12543662 intron Octbeta3R - chr3R 12543729 intron Octbeta3R - chr3R_8_12540001 chr3R_12540001 RAL-405 2025 chr3R 12602380 12602417 chr3R 12602478 12602509 6 91 3.0 1.0 2.0 2.0 129 chr3R 12602380 intergenic not near genes chr3R 12602444 intergenic not near genes chr3R 12602509 intergenic not near genes chr3R_6_12600001 chr3R_12600001 RAL-405 2026 chr3R 12757000 12757015 chr3R 12757145 12757152 5 143 5.0 4.0 4.5 0.9 152 chr3R 12757000 intron beat-Vc - chr3R 12757076 intron beat-Vc - chr3R 12757152 intron beat-Vc - chr3R_5_12755001 chr3R_12755001 RAL-405 2027 chr3R 12758104 12758157 chr3R 12758205 12758258 20 98 5.5 6.0 5.8 2.9 154 chr3R 12758104 intron beat-Vc - chr3R 12758181 intron beat-Vc - chr3R 12758258 intron beat-Vc - chr3R_20_12755001 chr3R_12755001 RAL-405 2028 chr3R 12763115 12763153 chr3R 12763212 12763240 16 94 0.5 9.5 5.0 2.7 125 chr3R 12763115 intron beat-Vc - chr3R 12763178 intron beat-Vc - chr3R 12763240 intron beat-Vc - chr3R_16_12760001 chr3R_12760001 RAL-405 2029 chr3R 12766074 12766108 chr3R 12766208 12766252 6 129 1.0 1.0 1.0 3.0 178 chr3R 12766074 intron beat-Vc - chr3R 12766163 intron beat-Vc - chr3R 12766252 intron beat-Vc - chr3R_6_12765001 chr3R_12765001 RAL-405 2030 chr3R 12780257 12780289 chr3R 12780390 12780422 BS 9 133 3.5 4.5 4.0 1.8 165 chr3R 12780257 intron beat-Vc - chr3R 12780340 intron beat-Vc - chr3R 12780422 intron beat-Vc - chr3R_9_12780001 chr3R_12780001 RAL-405 2031 chr3R 12786434 12786491 chr3R 12786814 12786837 12 370 1.0 4.0 2.5 3.4 403 chr3R 12786434 intergenic not near genes chr3R 12786636 intergenic not near genes chr3R 12786837 intergenic not near genes chr3R_12_12785001 chr3R_12785001 RAL-405 2032 chr3R 12819016 12819043 chr3R 12819110 12819146 6 100 1.0 4.0 2.5 1.7 130 chr3R 12819016 intergenic not near genes chr3R 12819081 intergenic not near genes chr3R 12819146 intergenic not near genes chr3R_6_12815001 chr3R_12815001 RAL-405 2033 chr3R 12864543 12864595 chr3R 12865047 12865100 roo 9 504 3.0 3.0 3.0 2.2 557 chr3R 12864543 intergenic not near genes chr3R 12864822 intergenic not near genes chr3R 12865100 intergenic not near genes chr3R_9_12860001 chr3R_12860001 RAL-405 2034 chr3R 12876939 12876986 chr3R 12877042 12877069 10 99 4.5 5.5 5.0 1.7 130 chr3R 12876939 intergenic not near genes chr3R 12877004 intergenic not near genes chr3R 12877069 intergenic not near genes chr3R_10_12875001 chr3R_12875001 RAL-405 2035 chr3R 12920184 12920186 chr3R 12925361 12925387 copia 5 5197 1.0 3.0 2.0 1.7 5203 chr3R 12920184 intron beat-Vb + chr3R 12922786 intron beat-Vb + chr3R 12925387 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-405 2036 chr3R 12947535 12947562 chr3R 12947623 12947627 4 86 1.5 3.0 2.2 1.2 92 chr3R 12947535 intergenic not near genes chr3R 12947581 intergenic not near genes chr3R 12947627 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-405 2037 chr3R 12952275 12952316 chr3R 12952415 12952420 5 128 2.5 2.0 2.2 1.6 145 chr3R 12952275 intron grsm - chr3R 12952348 intron grsm - chr3R 12952420 intron grsm - chr3R_5_12950001 chr3R_12950001 RAL-405 2038 chr3R 12972539 12972580 chr3R 12972698 12972739 13 151 7.0 6.5 6.8 1.7 200 chr3R 12972539 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972739 intron CG7381 - chr3R_13_12970001 chr3R_12970001 RAL-405 2039 chr3R 13059966 13059976 chr3R 13060158 13060189 4 208 1.5 3.0 2.2 1.2 223 chr3R 13059966 intron sim + chr3R 13060078 intron sim + chr3R 13060189 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-405 2040 chr3R 13061858 13061909 chr3R 13061973 13062008 16 112 3.0 4.0 3.5 3.6 150 chr3R 13061858 intron sim + chr3R 13061933 intron sim + chr3R 13062008 intron sim + chr3R_16_13060001 chr3R_13060001 RAL-405 2041 chr3R 13065794 13065846 chr3R 13065890 13065942 22 90 5.5 8.0 6.8 2.8 148 chr3R 13065794 intron sim + chr3R 13065868 intron sim + chr3R 13065942 intron sim + chr3R_22_13065001 chr3R_13065001 RAL-405 2042 chr3R 13071043 13071081 chr3R 13071150 13071193 13 109 9.0 3.0 6.0 1.9 150 chr3R 13071043 intron sim + chr3R 13071118 intron sim + chr3R 13071193 intron sim + chr3R_13_13070001 chr3R_13070001 RAL-405 2043 chr3R 13135820 13135852 chr3R 13138005 13138031 pogo 5 2184 2.5 3.0 2.8 1.3 2211 chr3R 13135820 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136926 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138031 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-405 2044 chr3R 13198742 13198768 chr3R 13199197 13199214 8 451 2.0 2.0 2.0 2.7 472 chr3R 13198742 intergenic not near genes chr3R 13198978 intergenic not near genes chr3R 13199214 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-405 2045 chr3R 13248631 13248652 chr3R 13248750 13248766 6 118 10.5 4.0 7.2 0.7 135 chr3R 13248631 intron Ace - chr3R 13248698 intron Ace - chr3R 13248766 intron Ace - chr3R_6_13245001 chr3R_13245001 RAL-405 2046 chr3R 13248655 13248678 chr3R 13248749 13248797 17 112 5.0 4.0 4.5 3.1 142 chr3R 13248655 intron Ace - chr3R 13248726 intron Ace - chr3R 13248797 intron Ace - chr3R_17_13245001 chr3R_13245001 RAL-405 2047 chr3R 13326920 13326953 chr3R 13327030 13327068 4 114 3.5 0.0 1.8 1.4 148 chr3R 13326920 intergenic not near genes chr3R 13326994 intergenic not near genes chr3R 13327068 intergenic not near genes chr3R_4_13325001 chr3R_13325001 RAL-405 2048 chr3R 13335009 13335052 chr3R 13335110 13335138 14 104 3.0 3.5 3.2 3.3 129 chr3R 13335009 intergenic not near genes chr3R 13335074 intergenic not near genes chr3R 13335138 intergenic not near genes chr3R_14_13335001 chr3R_13335001 RAL-405 2049 chr3R 13496617 13496662 chr3R 13496716 13496761 5 97 4.0 5.0 4.5 0.9 144 chr3R 13496617 intergenic not near genes chr3R 13496689 intergenic not near genes chr3R 13496761 intergenic not near genes chr3R_5_13495001 chr3R_13495001 RAL-405 2050 chr3R 13517208 13517258 chr3R 13520045 13520085 jockey 6 2835 8.0 0.0 4.0 1.2 2877 chr3R 13517208 intergenic not near genes chr3R 13518646 intergenic not near genes chr3R 13520085 intergenic not near genes chr3R_6_13515001 chr3R_13515001 RAL-405 2051 chr3R 13526672 13526707 chr3R 13526771 13526785 7 91 4.5 2.0 3.2 1.7 113 chr3R 13526672 intergenic not near genes chr3R 13526728 intergenic not near genes chr3R 13526785 intergenic not near genes chr3R_7_13525001 chr3R_13525001 RAL-405 2052 chr3R 13558014 13558049 chr3R 13558121 13558150 6 101 6.0 6.5 6.2 0.8 136 chr3R 13558014 intergenic not near genes chr3R 13558082 intergenic not near genes chr3R 13558150 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-405 2053 chr3R 13576528 13576570 chr3R 13576630 13576672 16 100 5.5 5.5 5.5 2.5 144 chr3R 13576528 intergenic not near genes chr3R 13576600 intergenic not near genes chr3R 13576672 intergenic not near genes chr3R_16_13575001 chr3R_13575001 RAL-405 2054 chr3R 13625699 13625724 chr3R 13625800 13625815 8 98 4.0 9.5 6.8 1.0 116 chr3R 13625699 intergenic not near genes chr3R 13625757 intergenic not near genes chr3R 13625815 intergenic not near genes chr3R_8_13625001 chr3R_13625001 RAL-405 2055 chr3R 13672928 13672973 chr3R 13673021 13673046 14 90 2.5 2.5 2.5 4.0 118 chr3R 13672928 intron Task6 - chr3R 13672987 intron Task6 - chr3R 13673046 intron Task6 - chr3R_14_13670001 chr3R_13670001 RAL-405 2056 chr3R 13758133 13758172 chr3R 13758239 13758278 5 106 0.0 6.0 3.0 1.2 145 chr3R 13758133 intron CG34383 + chr3R 13758206 intron CG34383 + chr3R 13758278 intron CG34383 + chr3R_5_13755001 chr3R_13755001 RAL-405 2057 chr3R 13896798 13896827 chr3R 13896956 13896994 5 166 2.5 3.0 2.8 1.3 196 chr3R 13896798 intergenic not near genes chr3R 13896896 intergenic not near genes chr3R 13896994 intergenic not near genes chr3R_5_13895001 chr3R_13895001 RAL-405 2058 chr3R 13948212 13948254 chr3R 13948310 13948352 7 97 6.0 2.5 4.2 1.3 140 chr3R 13948212 intergenic CG31517 + chr3R 13948282 intergenic CG31517 + chr3R 13948352 intergenic CG31517 + chr3R_7_13945001 chr3R_13945001 RAL-405 2059 chr3R 14021628 14021679 chr3R 14023465 14023516 S-element 28 1834 4.0 3.5 3.8 5.8 1888 chr3R 14021628 intron rdx - chr3R 14022572 intron rdx - chr3R 14023516 intron rdx - chr3R_28_14020001 chr3R_14020001 RAL-405 2060 chr3R 14044256 14044309 chr3R 14044365 14044398 9 107 0.0 9.5 4.8 1.6 142 chr3R 14044256 intergenic not near genes chr3R 14044327 intergenic not near genes chr3R 14044398 intergenic not near genes chr3R_9_14040001 chr3R_14040001 RAL-405 2061 chr3R 14058104 14058150 chr3R 14058244 14058290 16 137 3.5 6.5 5.0 2.7 186 chr3R 14058104 5` UTR foxo + chr3R 14058197 intron foxo + chr3R 14058290 intron foxo + chr3R_16_14055001 chr3R_14055001 RAL-405 2062 chr3R 14067128 14067156 chr3R 14067222 14067255 14 95 3.0 2.0 2.5 4.0 127 chr3R 14067128 exon foxo + chr3R 14067192 intron foxo + chr3R 14067255 intron foxo + chr3R_14_14065001 chr3R_14065001 RAL-405 2063 chr3R 14109068 14109094 chr3R 14109167 14109190 8 93 6.0 0.0 3.0 2.0 122 chr3R 14109068 intergenic CR44237 -,Or88a + chr3R 14109129 intergenic CR44237 -,Or88a + chr3R 14109190 intergenic CR44237 -,Or88a + chr3R_8_14105001 chr3R_14105001 RAL-405 2064 chr3R 14109095 14109107 chr3R 14109166 14109183 7 86 6.0 0.0 3.0 1.8 88 chr3R 14109095 intergenic CR44237 -,Or88a + chr3R 14109139 intergenic CR44237 -,Or88a + chr3R 14109183 intergenic CR44237 -,Or88a + chr3R_7_14105001 chr3R_14105001 RAL-405 2065 chr3R 14117423 14117461 chr3R 14117519 14117557 17 95 8.0 6.0 7.0 2.1 134 chr3R 14117423 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117557 intron Kif19A - chr3R_17_14115001 chr3R_14115001 RAL-405 2066 chr3R 14141374 14141424 chr3R 14141480 14141531 13 100 1.0 3.5 2.2 4.1 157 chr3R 14141374 intergenic not near genes chr3R 14141452 intergenic not near genes chr3R 14141531 intergenic not near genes chr3R_13_14140001 chr3R_14140001 RAL-405 2067 chr3R 14169837 14169878 chr3R 14169938 14169978 17 99 6.0 12.0 9.0 1.7 141 chr3R 14169837 3` UTR Dop1R1 - chr3R 14169908 3` UTR Dop1R1 - chr3R 14169978 3` UTR Dop1R1 - chr3R_17_14165001 chr3R_14165001 RAL-405 2068 chr3R 14174945 14174989 chr3R 14175047 14175096 12 97 5.0 4.5 4.8 2.1 151 chr3R 14174945 3` UTR Dop1R1 - chr3R 14175020 3` UTR Dop1R1 - chr3R 14175096 3` UTR Dop1R1 - chr3R_12_14175001 chr3R_14175001 RAL-405 2069 chr3R 14180791 14180835 chr3R 14185576 14185618 F-element 12 4777 4.0 5.0 4.5 2.2 4827 chr3R 14180791 intron Dop1R1 - chr3R 14183204 intron Dop1R1 - chr3R 14185618 intron Dop1R1 - chr3R_12_14180001 chr3R_14180001 RAL-405 2070 chr3R 14193823 14193847 chr3R 14193950 14193973 8 126 2.0 3.0 2.5 2.3 150 chr3R 14193823 intron Dop1R1 - chr3R 14193898 intron Dop1R1 - chr3R 14193973 intron Dop1R1 - chr3R_8_14190001 chr3R_14190001 RAL-405 2071 chr3R 14194420 14194450 chr3R 14203584 14203619 roo 9 9167 4.0 8.0 6.0 1.3 9199 chr3R 14194420 intron Dop1R1 - chr3R 14199020 intron Dop1R1 - chr3R 14203619 intron Dop1R1 - chr3R_9_14195001 chr3R_14195001 RAL-405 2072 chr3R 14253683 14253721 chr3R 14253782 14253820 12 97 1.0 3.5 2.2 3.8 137 chr3R 14253683 intron Aats-met - chr3R 14253752 intron Aats-met - chr3R 14253820 intron Aats-met - chr3R_12_14250001 chr3R_14250001 RAL-405 2073 chr3R 14291100 14291130 chr3R 14291203 14291225 10 108 0.0 4.5 2.2 3.1 125 chr3R 14291100 intron CG12207 + chr3R 14291162 intron CG12207 + chr3R 14291225 intron CG12207 + chr3R_10_14290001 chr3R_14290001 RAL-405 2074 chr3R 14327690 14327724 chr3R 14327782 14327821 18 93 3.0 9.0 6.0 2.6 131 chr3R 14327690 3` UTR CG3321 + chr3R 14327756 intergenic CG3321 +,spn-B + chr3R 14327821 intergenic CG3321 +,spn-B + chr3R_18_14325001 chr3R_14325001 RAL-405 2075 chr3R 14339583 14339649 chr3R 14339762 14339789 10 164 0.0 2.5 1.2 4.5 206 chr3R 14339583 intron NK7.1 - chr3R 14339686 intron NK7.1 - chr3R 14339789 intron NK7.1 - chr3R_10_14335001 chr3R_14335001 RAL-405 2076 chr3R 14440721 14440755 chr3R 14440797 14440851 12 90 1.5 4.0 2.8 3.2 130 chr3R 14440721 intron cv-c - chr3R 14440786 intron cv-c - chr3R 14440851 intron cv-c - chr3R_12_14440001 chr3R_14440001 RAL-405 2077 chr3R 14560876 14560919 chr3R 14560990 14561031 13 111 8.0 2.0 5.0 2.2 155 chr3R 14560876 intergenic CG14850 + chr3R 14560954 5` UTR CG14850 + chr3R 14561031 exon CG14850 + chr3R_13_14560001 chr3R_14560001 RAL-405 2078 chr3R 14608449 14608477 chr3R 14608561 14608589 12 111 2.0 5.0 3.5 2.7 140 chr3R 14608449 intergenic stumps + chr3R 14608519 intergenic stumps + chr3R 14608589 intergenic not near genes chr3R_12_14605001 chr3R_14605001 RAL-405 2079 chr3R 14624288 14624303 chr3R 14624432 14624434 7 144 11.5 3.5 7.5 0.8 146 chr3R 14624288 intron put - chr3R 14624361 intron put - chr3R 14624434 intron put - chr3R_7_14620001 chr3R_14620001 RAL-405 2080 chr3R 14662295 14662339 chr3R 14662396 14662440 10 94 1.5 2.0 1.8 3.6 145 chr3R 14662295 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662440 exon Rad17 - chr3R_10_14660001 chr3R_14660001 RAL-405 2081 chr3R 14685768 14685814 chr3R 14685869 14685899 8 95 2.5 3.0 2.8 2.1 131 chr3R 14685768 intron Meltrin - chr3R 14685834 intron Meltrin - chr3R 14685899 intron Meltrin - chr3R_8_14685001 chr3R_14685001 RAL-405 2082 chr3R 14704375 14704419 chr3R 14704465 14704475 14 91 8.0 4.0 6.0 2.0 100 chr3R 14704375 intron kibra - chr3R 14704425 intron kibra - chr3R 14704475 intron kibra - chr3R_14_14700001 chr3R_14700001 RAL-405 2083 chr3R 14764567 14764590 chr3R 14764670 14764696 4 103 8.5 0.5 4.5 0.7 129 chr3R 14764567 intron jvl + chr3R 14764632 intron jvl + chr3R 14764696 intron jvl + chr3R_4_14760001 chr3R_14760001 RAL-405 2084 chr3R 14898467 14898480 chr3R 14898607 14898620 5 138 13.0 5.5 9.2 0.5 153 chr3R 14898467 intergenic Nup93-2 -,CG3817 + chr3R 14898544 intergenic Nup93-2 -,CG3817 + chr3R 14898620 intergenic CG3817 +,Nup93-2 - chr3R_5_14895001 chr3R_14895001 RAL-405 2085 chr3R 14898483 14898500 chr3R 14898598 14898640 8 133 6.5 5.0 5.8 1.2 157 chr3R 14898483 intergenic Nup93-2 -,CG3817 + chr3R 14898562 intergenic CG3817 +,Nup93-2 - chr3R 14898640 intergenic CG3817 +,Nup93-2 - chr3R_8_14895001 chr3R_14895001 RAL-405 2086 chr3R 14952184 14952203 chr3R 14952354 14952373 6 167 9.5 5.0 7.2 0.7 189 chr3R 14952184 intergenic not near genes chr3R 14952278 intergenic not near genes chr3R 14952373 intergenic not near genes chr3R_6_14950001 chr3R_14950001 RAL-405 2087 chr3R 14955157 14955174 chr3R 14955262 14955284 9 108 2.0 2.5 2.2 2.8 127 chr3R 14955157 intergenic not near genes chr3R 14955220 intergenic not near genes chr3R 14955284 intergenic not near genes chr3R_9_14955001 chr3R_14955001 RAL-405 2088 chr3R 15026312 15026346 chr3R 15026418 15026452 15 105 1.0 4.5 2.8 3.9 140 chr3R 15026312 intergenic not near genes chr3R 15026382 intergenic not near genes chr3R 15026452 intergenic not near genes chr3R_15_15025001 chr3R_15025001 RAL-405 2089 chr3R 15031596 15031621 chr3R 15031671 15031689 4 70 3.5 4.0 3.8 0.8 93 chr3R 15031596 intergenic not near genes chr3R 15031642 intergenic not near genes chr3R 15031689 intergenic not near genes chr3R_4_15030001 chr3R_15030001 RAL-405 2090 chr3R 15041399 15041419 chr3R 15045198 15045223 Doc 11 3801 0.0 3.0 1.5 4.4 3824 chr3R 15041399 intergenic not near genes chr3R 15043311 intergenic not near genes chr3R 15045223 intergenic not near genes chr3R_11_15040001 chr3R_15040001 RAL-405 2091 chr3R 15048326 15048377 chr3R 15048468 15048508 8 139 2.5 2.5 2.5 2.3 182 chr3R 15048326 intergenic not near genes chr3R 15048417 intergenic not near genes chr3R 15048508 intergenic not near genes chr3R_8_15045001 chr3R_15045001 RAL-405 2092 chr3R 15059260 15059480 chr3R 15059473 15059587 BS 16 184 0.0 1.0 0.5 10.7 327 chr3R 15059260 intron dpr9 - chr3R 15059424 intron dpr9 - chr3R 15059587 intron dpr9 - chr3R_16_15055001 chr3R_15055001 RAL-405 2093 chr3R 15079786 15079838 chr3R 15080047 15080099 pogo 21 257 5.0 5.0 5.0 3.5 313 chr3R 15079786 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080099 3` UTR CG6966 - chr3R_21_15075001 chr3R_15075001 RAL-405 2094 chr3R 15102477 15102481 chr3R 15109753 15109757 412 5 7276 19.0 6.5 12.8 0.4 7280 chr3R 15102477 intron CG42788 - chr3R 15106117 intron CG42788 - chr3R 15109757 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-405 2095 chr3R 15102483 15102527 chr3R 15109751 15109775 412 10 7267 6.0 6.5 6.2 1.4 7292 chr3R 15102483 intron CG42788 - chr3R 15106129 intron CG42788 - chr3R 15109775 intron CG42788 - chr3R_10_15105001 chr3R_15105001 RAL-405 2096 chr3R 15127770 15127788 chr3R 15127868 15127888 11 99 7.5 9.0 8.2 1.2 118 chr3R 15127770 intron CG42788 - chr3R 15127829 intron CG42788 - chr3R 15127888 intron CG42788 - chr3R_11_15125001 chr3R_15125001 RAL-405 2097 chr3R 15127802 15127811 chr3R 15127860 15127911 8 85 3.5 7.0 5.2 1.3 109 chr3R 15127802 intron CG42788 - chr3R 15127856 intron CG42788 - chr3R 15127911 intron CG42788 - chr3R_8_15125001 chr3R_15125001 RAL-405 2098 chr3R 15132045 15132076 chr3R 15135125 15135151 Juan 7 3078 6.5 11.5 9.0 0.7 3106 chr3R 15132045 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135151 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-405 2099 chr3R 15143902 15143954 chr3R 15144105 15144135 23 197 5.0 3.0 4.0 4.6 233 chr3R 15143902 intron GlyS - chr3R 15144018 intron GlyS - chr3R 15144135 intron GlyS - chr3R_23_15140001 chr3R_15140001 RAL-405 2100 chr3R 15162531 15162558 chr3R 15167319 15167341 F-element 4 4784 12.5 4.0 8.2 0.4 4810 chr3R 15162531 intron Gyc88E + chr3R 15164936 intron Gyc88E + chr3R 15167341 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-405 2101 chr3R 15202737 15202776 chr3R 15202837 15202876 9 96 5.0 4.5 4.8 1.6 139 chr3R 15202737 3` UTR CG42542 + chr3R 15202806 3` UTR CG42542 + chr3R 15202876 3` UTR CG42542 + chr3R_9_15200001 chr3R_15200001 RAL-405 2102 chr3R 15302212 15302262 chr3R 15302318 15302328 4 96 5.5 3.0 4.2 0.8 116 chr3R 15302212 intron Tm1 + chr3R 15302270 intron Tm1 + chr3R 15302328 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-405 2103 chr3R 15320377 15320419 chr3R 15320640 15320677 11 260 3.0 5.5 4.2 2.1 300 chr3R 15320377 5` UTR CG44040 + chr3R 15320527 exon CG44040 + chr3R 15320677 3` UTR CG44040 + chr3R_11_15320001 chr3R_15320001 RAL-405 2104 chr3R 15457714 15457736 chr3R 15457813 15457835 4 96 1.5 9.5 5.5 0.6 121 chr3R 15457714 intron AdamTS-A - chr3R 15457774 intron AdamTS-A - chr3R 15457835 intron AdamTS-A - chr3R_4_15455001 chr3R_15455001 RAL-405 2105 chr3R 15517589 15517621 chr3R 15517687 15517724 7 94 1.0 2.0 1.5 2.8 135 chr3R 15517589 intergenic not near genes chr3R 15517656 intergenic not near genes chr3R 15517724 intergenic not near genes chr3R_7_15515001 chr3R_15515001 RAL-405 2106 chr3R 15594654 15594675 chr3R 15594746 15594778 9 100 0.0 11.0 5.5 1.4 124 chr3R 15594654 intergenic not near genes chr3R 15594716 intergenic not near genes chr3R 15594778 intergenic not near genes chr3R_9_15590001 chr3R_15590001 RAL-405 2107 chr3R 15601158 15601165 chr3R 15608695 15608697 412 5 7538 8.5 9.0 8.8 0.5 7539 chr3R 15601158 intergenic not near genes chr3R 15604928 intergenic not near genes chr3R 15608697 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-405 2108 chr3R 15601166 15601196 chr3R 15608688 15608738 412 12 7531 2.5 8.5 5.5 1.8 7572 chr3R 15601166 intergenic not near genes chr3R 15604952 intergenic not near genes chr3R 15608738 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-405 2109 chr3R 15618732 15618762 chr3R 15626206 15626249 blood 4 7482 3.0 5.0 4.0 0.8 7517 chr3R 15618732 intergenic not near genes chr3R 15622490 intergenic not near genes chr3R 15626249 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-405 2110 chr3R 15646788 15646797 chr3R 15646877 15646900 4 100 2.0 5.0 3.5 0.9 112 chr3R 15646788 intergenic not near genes chr3R 15646844 intergenic not near genes chr3R 15646900 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-405 2111 chr3R 15691183 15691331 chr3R 15691287 15691438 16 104 1.0 0.5 0.8 8.9 255 chr3R 15691183 intergenic not near genes chr3R 15691310 intergenic not near genes chr3R 15691438 intergenic not near genes chr3R_16_15690001 chr3R_15690001 RAL-405 2112 chr3R 15709616 15709652 chr3R 15709765 15709796 4 146 7.5 4.0 5.8 0.6 180 chr3R 15709616 intergenic not near genes chr3R 15709706 intergenic not near genes chr3R 15709796 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-405 2113 chr3R 15711266 15711282 chr3R 15711355 15711376 5 95 7.0 2.0 4.5 0.9 110 chr3R 15711266 intergenic not near genes chr3R 15711321 intergenic not near genes chr3R 15711376 intergenic not near genes chr3R_5_15710001 chr3R_15710001 RAL-405 2114 chr3R 15718409 15718443 chr3R 15724757 15724785 21 6347 26.5 13.5 20.0 1.0 6376 chr3R 15718409 intergenic not near genes chr3R 15721597 intergenic not near genes chr3R 15724785 intergenic not near genes chr3R_21_15720001 chr3R_15720001 RAL-405 2115 chr3R 15735225 15735236 chr3R 15739965 15739976 F-element 6 4740 3.5 8.5 6.0 0.9 4751 chr3R 15735225 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739976 intergenic not near genes chr3R_6_15735001 chr3R_15735001 RAL-405 2116 chr3R 15779641 15779675 chr3R 15779734 15779771 10 96 7.5 6.5 7.0 1.2 130 chr3R 15779641 intergenic CG5614 + chr3R 15779706 intergenic CG5614 + chr3R 15779771 intergenic CG5614 + chr3R_10_15775001 chr3R_15775001 RAL-405 2117 chr3R 15785592 15785625 chr3R 15785693 15785726 6 101 6.0 2.5 4.2 1.2 134 chr3R 15785592 intergenic not near genes chr3R 15785659 intergenic not near genes chr3R 15785726 intergenic not near genes chr3R_6_15785001 chr3R_15785001 RAL-405 2118 chr3R 15785629 15785642 chr3R 15785691 15785738 5 86 3.0 2.5 2.8 1.3 109 chr3R 15785629 intergenic not near genes chr3R 15785684 intergenic not near genes chr3R 15785738 intergenic not near genes chr3R_5_15785001 chr3R_15785001 RAL-405 2119 chr3R 15871388 15871401 chr3R 15871507 15871520 5 118 8.5 1.5 5.0 0.8 132 chr3R 15871388 intron CG31183 - chr3R 15871454 intron CG31183 - chr3R 15871520 intron CG31183 - chr3R_5_15870001 chr3R_15870001 RAL-405 2120 chr3R 15871405 15871440 chr3R 15871504 15871519 6 90 3.5 1.0 2.2 1.9 114 chr3R 15871405 intron CG31183 - chr3R 15871462 intron CG31183 - chr3R 15871519 intron CG31183 - chr3R_6_15870001 chr3R_15870001 RAL-405 2121 chr3R 15892635 15892684 chr3R 15892736 15892750 15 97 3.5 7.0 5.2 2.4 115 chr3R 15892635 intron CG14877 - chr3R 15892692 intron CG14877 - chr3R 15892750 intron CG14877 - chr3R_15_15890001 chr3R_15890001 RAL-405 2122 chr3R 15917424 15917476 chr3R 15917743 15917795 7 317 6.5 2.5 4.5 1.3 371 chr3R 15917424 intron CG45105 - chr3R 15917610 exon CG45105 - chr3R 15917795 exon CG45105 - chr3R_7_15915001 chr3R_15915001 RAL-405 2123 chr3R 15984487 15984530 chr3R 15984604 15984652 26 118 3.0 4.0 3.5 5.8 165 chr3R 15984487 intergenic not near genes chr3R 15984570 intergenic not near genes chr3R 15984652 intergenic not near genes chr3R_26_15980001 chr3R_15980001 RAL-405 2124 chr3R 16033391 16033442 chr3R 16033492 16033533 11 98 5.0 4.5 4.8 1.9 142 chr3R 16033391 intron pnr + chr3R 16033462 intron pnr + chr3R 16033533 intron pnr + chr3R_11_16030001 chr3R_16030001 RAL-405 2125 chr3R 16105623 16105646 chr3R 16105763 16105786 11 137 5.5 2.0 3.8 2.3 163 chr3R 16105623 3` UTR Akt1 + chr3R 16105704 intergenic Akt1 + chr3R 16105786 intergenic Akt1 + chr3R_11_16105001 chr3R_16105001 RAL-405 2126 chr3R 16111433 16111471 chr3R 16111529 16111567 4 94 5.5 8.5 7.0 0.5 134 chr3R 16111433 intergenic not near genes chr3R 16111500 intergenic not near genes chr3R 16111567 intergenic not near genes chr3R_4_16110001 chr3R_16110001 RAL-405 2127 chr3R 16111692 16111700 chr3R 16111988 16112001 5 300 8.5 5.0 6.8 0.6 309 chr3R 16111692 intergenic not near genes chr3R 16111846 intergenic not near genes chr3R 16112001 intergenic not near genes chr3R_5_16110001 chr3R_16110001 RAL-405 2128 chr3R 16111702 16111722 chr3R 16111983 16112023 8 298 7.0 3.5 5.2 1.3 321 chr3R 16111702 intergenic not near genes chr3R 16111862 intergenic not near genes chr3R 16112023 intergenic not near genes chr3R_8_16110001 chr3R_16110001 RAL-405 2129 chr3R 16225069 16225119 chr3R 16225174 16225224 12 103 4.0 8.0 6.0 1.7 155 chr3R 16225069 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225224 intergenic tara + chr3R_12_16225001 chr3R_16225001 RAL-405 2130 chr3R 16246522 16246557 chr3R 16246618 16246653 4 95 0.0 5.5 2.8 1.1 131 chr3R 16246522 intron tara + chr3R 16246588 intron tara + chr3R 16246653 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-405 2131 chr3R 16275569 16275611 chr3R 16275904 16275946 6 335 4.0 7.5 5.8 0.9 377 chr3R 16275569 intron gish + chr3R 16275758 intron gish + chr3R 16275946 intron gish + chr3R_6_16275001 chr3R_16275001 RAL-405 2132 chr3R 16276275 16276302 chr3R 16276354 16276401 9 79 3.5 3.0 3.2 2.1 126 chr3R 16276275 intron gish + chr3R 16276338 intron gish + chr3R 16276401 intron gish + chr3R_9_16275001 chr3R_16275001 RAL-405 2133 chr3R 16333763 16334005 chr3R 16333846 16334107 27 97 7.0 7.5 7.2 3.3 344 chr3R 16333763 intron Sulf1 - chr3R 16333935 intron Sulf1 - chr3R 16334107 intron Sulf1 - chr3R_27_16330001 chr3R_16330001 RAL-405 2134 chr3R 16368448 16368484 chr3R 16368542 16368583 9 92 2.5 2.0 2.2 2.8 135 chr3R 16368448 intergenic CG14880 -,CG10317 - chr3R 16368516 intergenic CG14880 -,CG10317 - chr3R 16368583 intergenic CG10317 -,CG14880 - chr3R_9_16365001 chr3R_16365001 RAL-405 2135 chr3R 16450228 16450245 chr3R 16450327 16450344 8 97 8.0 8.0 8.0 0.9 116 chr3R 16450228 intron Pak3 - chr3R 16450286 intron Pak3 - chr3R 16450344 intron Pak3 - chr3R_8_16450001 chr3R_16450001 RAL-405 2136 chr3R 16450251 16450266 chr3R 16450322 16450365 12 92 3.5 6.0 4.8 2.1 114 chr3R 16450251 intron Pak3 - chr3R 16450308 intron Pak3 - chr3R 16450365 intron Pak3 - chr3R_12_16450001 chr3R_16450001 RAL-405 2137 chr3R 16508427 16508460 chr3R 16508549 16508582 11 120 8.5 6.5 7.5 1.3 155 chr3R 16508427 intron CG42342 + chr3R 16508504 intron CG42342 + chr3R 16508582 intron CG42342 + chr3R_11_16505001 chr3R_16505001 RAL-405 2138 chr3R 16534438 16534452 chr3R 16534546 16534551 7 105 3.5 5.0 4.2 1.3 113 chr3R 16534438 intron CG42342 + chr3R 16534494 intron CG42342 + chr3R 16534551 intron CG42342 + chr3R_7_16530001 chr3R_16530001 RAL-405 2139 chr3R 16578142 16578181 chr3R 16578243 16578272 5 98 1.0 3.5 2.2 1.6 130 chr3R 16578142 intron Scp2 - chr3R 16578207 intron Scp2 - chr3R 16578272 intron Scp2 - chr3R_5_16575001 chr3R_16575001 RAL-405 2140 chr3R 16708673 16708729 chr3R 16708774 16708820 11 96 3.0 2.0 2.5 3.1 147 chr3R 16708673 intron Ubx - chr3R 16708746 intron Ubx - chr3R 16708820 intron Ubx - chr3R_11_16705001 chr3R_16705001 RAL-405 2141 chr3R 16725758 16725809 chr3R 16725859 16725910 19 96 5.0 4.0 4.5 3.5 152 chr3R 16725758 intron Ubx - chr3R 16725834 intron Ubx - chr3R 16725910 intron Ubx - chr3R_19_16725001 chr3R_16725001 RAL-405 2142 chr3R 16734857 16734875 chr3R 16734960 16734978 6 100 0.5 8.0 4.2 1.2 121 chr3R 16734857 intergenic Ubx - chr3R 16734918 intergenic Ubx - chr3R 16734978 intergenic not near genes chr3R_6_16730001 chr3R_16730001 RAL-405 2143 chr3R 16756307 16756339 chr3R 16762518 16762548 diver 4 6206 3.0 3.0 3.0 1.0 6241 chr3R 16756307 intron bxd - chr3R 16759428 intron bxd - chr3R 16762548 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-405 2144 chr3R 16845135 16845183 chr3R 16845242 16845253 9 103 4.0 5.5 4.8 1.6 118 chr3R 16845135 intron iab-8 - chr3R 16845194 intron iab-8 - chr3R 16845253 intron iab-8 - chr3R_9_16845001 chr3R_16845001 RAL-405 2145 chr3R 16856591 16856617 chr3R 16856720 16856744 7 126 4.0 0.0 2.0 2.3 153 chr3R 16856591 intron iab-8 - chr3R 16856668 intron iab-8 - chr3R 16856744 intron iab-8 - chr3R_7_16855001 chr3R_16855001 RAL-405 2146 chr3R 16860330 16860362 chr3R 16860418 16860460 5 89 3.5 0.0 1.8 1.8 130 chr3R 16860330 intron iab-8 - chr3R 16860395 intron iab-8 - chr3R 16860460 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-405 2147 chr3R 17012962 17012969 chr3R 17013038 17013065 4 86 7.5 4.0 5.8 0.6 103 chr3R 17012962 intergenic CG8907 + chr3R 17013014 intergenic CG8907 + chr3R 17013065 intergenic not near genes chr3R_4_17010001 chr3R_17010001 RAL-405 2148 chr3R 17027589 17027645 chr3R 17030944 17030975 7 3337 27.0 35.5 31.2 0.2 3386 chr3R 17027589 intron Pxd + chr3R 17029282 exon CG5225 + chr3R 17030975 intergenic CG5225 + chr3R_7_17025001 chr3R_17025001 RAL-405 2149 chr3R 17096356 17096392 chr3R 17096463 17096474 6 102 4.0 6.0 5.0 1.0 118 chr3R 17096356 intron cher - chr3R 17096415 intron cher - chr3R 17096474 intron cher - chr3R_6_17095001 chr3R_17095001 RAL-405 2150 chr3R 17101124 17101129 chr3R 17101224 17101224 4 99 7.5 0.0 3.8 0.8 100 chr3R 17101124 intron cher - chr3R 17101174 intron cher - chr3R 17101224 intron cher - chr3R_4_17100001 chr3R_17100001 RAL-405 2151 chr3R 17121505 17121555 chr3R 17121719 17121770 20 211 7.0 7.0 7.0 2.5 265 chr3R 17121505 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121770 intron,exon cher -,CG42779 + chr3R_20_17120001 chr3R_17120001 RAL-405 2152 chr3R 17176269 17176285 chr3R 17176375 17176391 7 106 9.0 5.0 7.0 0.9 122 chr3R 17176269 intron Mur89F - chr3R 17176330 intron Mur89F - chr3R 17176391 intron Mur89F - chr3R_7_17175001 chr3R_17175001 RAL-405 2153 chr3R 17184717 17184753 chr3R 17184813 17184849 14 96 5.0 2.0 3.5 3.1 132 chr3R 17184717 intron Mur89F - chr3R 17184783 intron Mur89F - chr3R 17184849 intron Mur89F - chr3R_14_17180001 chr3R_17180001 RAL-405 2154 chr3R 17214594 17214609 chr3R 17214700 17214715 6 104 14.5 7.5 11.0 0.5 121 chr3R 17214594 intergenic not near genes chr3R 17214654 intergenic not near genes chr3R 17214715 intergenic not near genes chr3R_6_17210001 chr3R_17210001 RAL-405 2155 chr3R 17214611 17214642 chr3R 17214692 17214726 16 99 5.5 7.0 6.2 2.2 115 chr3R 17214611 intergenic not near genes chr3R 17214668 intergenic not near genes chr3R 17214726 intergenic not near genes chr3R_16_17210001 chr3R_17210001 RAL-405 2156 chr3R 17242643 17242693 chr3R 17242745 17242790 14 95 4.5 5.5 5.0 2.3 147 chr3R 17242643 intron beat-IIb - chr3R 17242716 intron beat-IIb - chr3R 17242790 intron beat-IIb - chr3R_14_17240001 chr3R_17240001 RAL-405 2157 chr3R 17294656 17294668 chr3R 17295104 17295116 BS 5 448 4.0 4.5 4.2 1.0 460 chr3R 17294656 intergenic not near genes chr3R 17294886 intergenic not near genes chr3R 17295116 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-405 2158 chr3R 17346680 17346717 chr3R 17348263 17348300 F-element 6 1580 5.5 2.0 3.8 1.2 1620 chr3R 17346680 intron beat-IIa - chr3R 17347490 intron beat-IIa - chr3R 17348300 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-405 2159 chr3R 17348710 17348746 chr3R 17348819 17348855 6 106 5.5 2.5 4.0 1.2 145 chr3R 17348710 intron beat-IIa - chr3R 17348782 intron beat-IIa - chr3R 17348855 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-405 2160 chr3R 17419392 17419397 chr3R 17419494 17419501 5 103 0.0 0.0 0.0 5.0 109 chr3R 17419392 intergenic CG42834 + chr3R 17419446 intergenic CG42834 + chr3R 17419501 intergenic CG42834 + chr3R_5_17415001 chr3R_17415001 RAL-405 2161 chr3R 17432825 17432851 chr3R 17433000 17433046 11 195 0.5 3.0 1.8 3.9 221 chr3R 17432825 intron CG5873 + chr3R 17432936 intron CG5873 + chr3R 17433046 intron CG5873 + chr3R_11_17430001 chr3R_17430001 RAL-405 2162 chr3R 17454088 17454120 chr3R 17454324 17454332 6 228 5.5 5.5 5.5 0.9 244 chr3R 17454088 intergenic not near genes chr3R 17454210 intergenic not near genes chr3R 17454332 intergenic not near genes chr3R_6_17450001 chr3R_17450001 RAL-405 2163 chr3R 17463236 17463284 chr3R 17463541 17463586 20 303 3.5 3.0 3.2 4.8 350 chr3R 17463236 intergenic not near genes chr3R 17463411 intergenic not near genes chr3R 17463586 intergenic not near genes chr3R_20_17460001 chr3R_17460001 RAL-405 2164 chr3R 17472298 17472345 chr3R 17472423 17472470 11 121 2.5 4.0 3.2 2.6 172 chr3R 17472298 intergenic not near genes chr3R 17472384 intergenic not near genes chr3R 17472470 intergenic not near genes chr3R_11_17470001 chr3R_17470001 RAL-405 2165 chr3R 17506366 17506392 chr3R 17506464 17506490 8 97 3.0 7.0 5.0 1.3 124 chr3R 17506366 intergenic not near genes chr3R 17506428 intergenic not near genes chr3R 17506490 intergenic not near genes chr3R_8_17505001 chr3R_17505001 RAL-405 2166 chr3R 17522291 17522301 chr3R 17522411 17522421 5 119 0.0 6.5 3.2 1.2 130 chr3R 17522291 intergenic not near genes chr3R 17522356 intergenic not near genes chr3R 17522421 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-405 2167 chr3R 17638298 17638308 chr3R 17638804 17638814 roo 5 506 14.0 0.0 7.0 0.6 516 chr3R 17638298 intron CG43175 + chr3R 17638556 intron CG43175 + chr3R 17638814 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-405 2168 chr3R 17645682 17645719 chr3R 17645832 17645869 9 147 3.0 4.5 3.8 1.9 187 chr3R 17645682 intergenic CG43175 + chr3R 17645776 intergenic not near genes chr3R 17645869 intergenic not near genes chr3R_9_17645001 chr3R_17645001 RAL-405 2169 chr3R 17655849 17655870 chr3R 17655948 17655976 7 104 4.5 2.0 3.2 1.7 127 chr3R 17655849 intron CG14322 + chr3R 17655912 intron CG14322 + chr3R 17655976 intron CG14322 + chr3R_7_17655001 chr3R_17655001 RAL-405 2170 chr3R 17734823 17734841 chr3R 17734957 17734975 9 134 13.5 5.0 9.2 0.9 152 chr3R 17734823 intergenic CG14321 + chr3R 17734899 intergenic not near genes chr3R 17734975 intergenic not near genes chr3R_9_17730001 chr3R_17730001 RAL-405 2171 chr3R 17734842 17734860 chr3R 17734956 17734984 9 121 10.5 4.0 7.2 1.1 142 chr3R 17734842 intergenic CG14321 + chr3R 17734913 intergenic not near genes chr3R 17734984 intergenic not near genes chr3R_9_17730001 chr3R_17730001 RAL-405 2172 chr3R 17766560 17766586 chr3R 17766684 17766685 10 120 1.0 9.0 5.0 1.7 125 chr3R 17766560 intergenic not near genes chr3R 17766622 intergenic not near genes chr3R 17766685 intergenic not near genes chr3R_10_17765001 chr3R_17765001 RAL-405 2173 chr3R 17773355 17773389 chr3R 17773470 17773504 8 110 3.0 5.0 4.0 1.6 149 chr3R 17773355 exon CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773504 exon CG43102 - chr3R_8_17770001 chr3R_17770001 RAL-405 2174 chr3R 17823182 17823230 chr3R 17823279 17823307 19 91 7.0 2.5 4.8 3.3 125 chr3R 17823182 intron tinc + chr3R 17823244 intron tinc + chr3R 17823307 intron tinc + chr3R_19_17820001 chr3R_17820001 RAL-405 2175 chr3R 17825896 17825925 chr3R 17825995 17826017 4 96 0.0 5.0 2.5 1.1 121 chr3R 17825896 intron tinc + chr3R 17825956 intron tinc + chr3R 17826017 intron tinc + chr3R_4_17825001 chr3R_17825001 RAL-405 2176 chr3R 17899069 17899094 chr3R 17899167 17899182 4 96 18.0 11.5 14.8 0.3 113 chr3R 17899069 intron Rim - chr3R 17899126 intron Rim - chr3R 17899182 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-405 2177 chr3R 17925865 17925878 chr3R 17927337 17927365 hobo 5 1483 1.5 6.5 4.0 1.0 1500 chr3R 17925865 intron cpo + chr3R 17926615 intron cpo + chr3R 17927365 intron cpo + chr3R_5_17925001 chr3R_17925001 RAL-405 2178 chr3R 18030468 18030477 chr3R 18030567 18030581 4 103 2.0 5.5 3.8 0.8 113 chr3R 18030468 intergenic not near genes chr3R 18030524 intergenic not near genes chr3R 18030581 intergenic not near genes chr3R_4_18030001 chr3R_18030001 RAL-405 2179 chr3R 18041740 18041774 chr3R 18041837 18041850 6 93 1.0 1.0 1.0 3.0 110 chr3R 18041740 intergenic not near genes chr3R 18041795 intergenic not near genes chr3R 18041850 intergenic not near genes chr3R_6_18040001 chr3R_18040001 RAL-405 2180 chr3R 18061427 18061460 chr3R 18061539 18061572 7 112 2.0 0.5 1.2 3.2 145 chr3R 18061427 intergenic not near genes chr3R 18061500 intergenic not near genes chr3R 18061572 intergenic not near genes chr3R_7_18060001 chr3R_18060001 RAL-405 2181 chr3R 18061552 18061614 chr3R 18063146 18063202 F-element 4 1591 0.5 0.0 0.2 3.3 1650 chr3R 18061552 intergenic not near genes chr3R 18062377 intergenic not near genes chr3R 18063202 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-405 2182 chr3R 18122877 18122916 chr3R 18122974 18123013 5 94 3.0 7.0 5.0 0.8 136 chr3R 18122877 intron sr + chr3R 18122945 intron sr + chr3R 18123013 intron sr + chr3R_5_18120001 chr3R_18120001 RAL-405 2183 chr3R 18136225 18136254 chr3R 18136349 18136383 6 128 5.0 5.0 5.0 1.0 158 chr3R 18136225 intergenic not near genes chr3R 18136304 intergenic not near genes chr3R 18136383 intergenic not near genes chr3R_6_18135001 chr3R_18135001 RAL-405 2184 chr3R 18331765 18331776 chr3R 18333279 18333284 hopper2 5 1512 18.0 1.5 9.8 0.5 1519 chr3R 18331765 3` UTR CG15803 - chr3R 18332524 intron CG15803 - chr3R 18333284 3` UTR CG15803 - chr3R_5_18330001 chr3R_18330001 RAL-405 2185 chr3R 18338980 18339028 chr3R 18339104 18339152 18 123 1.0 5.5 3.2 4.3 172 chr3R 18338980 intron CG15803 - chr3R 18339066 intron CG15803 - chr3R 18339152 intron CG15803 - chr3R_18_18335001 chr3R_18335001 RAL-405 2186 chr3R 18352556 18352601 chr3R 18352669 18352714 11 107 6.0 2.5 4.2 2.1 158 chr3R 18352556 intron CG15803 - chr3R 18352635 intron CG15803 - chr3R 18352714 intron CG15803 - chr3R_11_18350001 chr3R_18350001 RAL-405 2187 chr3R 18449373 18449423 chr3R 18449470 18449492 12 91 6.5 4.0 5.2 1.9 119 chr3R 18449373 intron fru - chr3R 18449432 intron fru - chr3R 18449492 intron fru - chr3R_12_18445001 chr3R_18445001 RAL-405 2188 chr3R 18472264 18472291 chr3R 18472385 18472412 5 118 9.0 4.5 6.8 0.6 148 chr3R 18472264 intron fru - chr3R 18472338 intron fru - chr3R 18472412 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-405 2189 chr3R 18498174 18498187 chr3R 18498270 18498283 6 96 0.0 4.5 2.2 1.9 109 chr3R 18498174 intron fru - chr3R 18498228 intron fru - chr3R 18498283 intron fru - chr3R_6_18495001 chr3R_18495001 RAL-405 2190 chr3R 18541524 18541544 chr3R 18541620 18541640 7 95 8.5 8.0 8.2 0.8 116 chr3R 18541524 intron fru - chr3R 18541582 intron fru - chr3R 18541640 intron fru - chr3R_7_18540001 chr3R_18540001 RAL-405 2191 chr3R 18606494 18606529 chr3R 18610736 18610766 F-element 17 4246 7.0 10.5 8.8 1.7 4272 chr3R 18606494 intron,intron qin +,CG14304 - chr3R 18608630 intron,intron qin +,CG14304 - chr3R 18610766 intron,intron qin +,CG14304 - chr3R_17_18605001 chr3R_18605001 RAL-405 2192 chr3R 18617693 18617736 chr3R 18617793 18617836 16 97 5.0 3.0 4.0 3.2 143 chr3R 18617693 intron,intron qin +,CG14304 - chr3R 18617764 intron,intron qin +,CG14304 - chr3R 18617836 intron,intron qin +,CG14304 - chr3R_16_18615001 chr3R_18615001 RAL-405 2193 chr3R 18670370 18670381 chr3R 18670478 18670494 9 109 5.5 10.0 7.8 1.0 124 chr3R 18670370 intron CG7702 + chr3R 18670432 intron CG7702 + chr3R 18670494 intron CG7702 + chr3R_9_18670001 chr3R_18670001 RAL-405 2194 chr3R 18670384 18670411 chr3R 18670476 18670499 11 107 3.5 10.0 6.8 1.4 115 chr3R 18670384 intron CG7702 + chr3R 18670442 intron CG7702 + chr3R 18670499 intron CG7702 + chr3R_11_18670001 chr3R_18670001 RAL-405 2195 chr3R 18716878 18716926 chr3R 18717048 18717096 19 166 8.0 7.0 7.5 2.2 218 chr3R 18716878 intron,3` UTR Cha +,VAChT + chr3R 18716987 intron,3` UTR Cha +,VAChT + chr3R 18717096 intron,3` UTR Cha +,VAChT + chr3R_19_18715001 chr3R_18715001 RAL-405 2196 chr3R 18766761 18766805 chr3R 18766855 18766903 24 93 5.0 4.0 4.5 4.4 142 chr3R 18766761 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766903 intron CG7720 - chr3R_24_18765001 chr3R_18765001 RAL-405 2197 chr3R 18770278 18770322 chr3R 18770375 18770408 17 99 8.0 2.0 5.0 2.8 130 chr3R 18770278 intron CG7720 - chr3R 18770343 intron CG7720 - chr3R 18770408 intron CG7720 - chr3R_17_18770001 chr3R_18770001 RAL-405 2198 chr3R 18807309 18807327 chr3R 18807405 18807423 9 96 0.5 0.0 0.2 7.5 114 chr3R 18807309 intron CG18208 - chr3R 18807366 intron CG18208 - chr3R 18807423 intron CG18208 - chr3R_9_18805001 chr3R_18805001 RAL-405 2199 chr3R 18812082 18812104 chr3R 18812158 18812202 4 77 2.5 5.5 4.0 0.8 120 chr3R 18812082 intron CG18208 - chr3R 18812142 intron CG18208 - chr3R 18812202 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-405 2200 chr3R 18841892 18841911 chr3R 18842249 18842278 9 372 2.5 5.0 3.8 1.9 386 chr3R 18841892 intron CG18208 - chr3R 18842085 intron CG18208 - chr3R 18842278 intron CG18208 - chr3R_9_18840001 chr3R_18840001 RAL-405 2201 chr3R 18842880 18842933 chr3R 18842988 18843036 22 107 6.0 5.5 5.8 3.2 156 chr3R 18842880 intron CG18208 - chr3R 18842958 intron CG18208 - chr3R 18843036 intron CG18208 - chr3R_22_18840001 chr3R_18840001 RAL-405 2202 chr3R 18848814 18848818 chr3R 18848893 18848918 4 94 3.0 4.0 3.5 0.9 104 chr3R 18848814 5` UTR CG18208 - chr3R 18848866 5` UTR CG18208 - chr3R 18848918 5` UTR CG18208 - chr3R_4_18845001 chr3R_18845001 RAL-405 2203 chr3R 18910772 18910784 chr3R 18910876 18910887 5 103 10.5 4.0 7.2 0.6 115 chr3R 18910772 intergenic EndoA +,CG14291 - chr3R 18910830 intergenic EndoA +,CG14291 - chr3R 18910887 intergenic EndoA +,CG14291 - chr3R_5_18910001 chr3R_18910001 RAL-405 2204 chr3R 18910790 18910820 chr3R 18910869 18910899 12 96 5.5 3.5 4.5 2.2 109 chr3R 18910790 intergenic EndoA +,CG14291 - chr3R 18910844 intergenic EndoA +,CG14291 - chr3R 18910899 intergenic EndoA +,CG14291 - chr3R_12_18910001 chr3R_18910001 RAL-405 2205 chr3R 18946182 18946218 chr3R 18946573 18946608 8 387 2.5 8.5 5.5 1.2 426 chr3R 18946182 intron CG42613 + chr3R 18946395 intron CG42613 + chr3R 18946608 intron CG42613 + chr3R_8_18945001 chr3R_18945001 RAL-405 2206 chr3R 18993924 18993940 chr3R 18993997 18994045 5 95 2.0 2.5 2.2 1.6 121 chr3R 18993924 intron gukh + chr3R 18993984 intron gukh + chr3R 18994045 intron gukh + chr3R_5_18990001 chr3R_18990001 RAL-405 2207 chr3R 19003962 19004015 chr3R 19004297 19004310 7 324 3.5 4.0 3.8 1.5 348 chr3R 19003962 intron gukh + chr3R 19004136 intron gukh + chr3R 19004310 intron gukh + chr3R_7_19000001 chr3R_19000001 RAL-405 2208 chr3R 19013001 19013049 chr3R 19013105 19013133 13 97 1.5 0.0 0.8 7.2 132 chr3R 19013001 intron gukh + chr3R 19013067 intron gukh + chr3R 19013133 intron gukh + chr3R_13_19010001 chr3R_19010001 RAL-405 2209 chr3R 19025517 19025563 chr3R 19025781 19025826 4 262 1.0 2.5 1.8 1.4 309 chr3R 19025517 exon CG14285 + chr3R 19025672 exon CG14285 + chr3R 19025826 exon CG14285 + chr3R_4_19025001 chr3R_19025001 RAL-405 2210 chr3R 19136408 19136443 chr3R 19139783 19139809 Bari1 10 3373 42.5 46.5 44.5 0.2 3401 chr3R 19136408 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139809 3` UTR Ppcs - chr3R_10_19135001 chr3R_19135001 RAL-405 2211 chr3R 19140268 19140288 chr3R 19140716 19140756 6 458 3.0 2.5 2.8 1.6 488 chr3R 19140268 3` UTR Ppcs - chr3R 19140512 3` UTR Ppcs - chr3R 19140756 3` UTR Ppcs - chr3R_6_19140001 chr3R_19140001 RAL-405 2212 chr3R 19140292 19140297 chr3R 19140710 19140754 4 442 1.5 2.5 2.0 1.3 462 chr3R 19140292 3` UTR Ppcs - chr3R 19140523 3` UTR Ppcs - chr3R 19140754 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-405 2213 chr3R 19348635 19348645 chr3R 19348734 19348744 6 98 11.0 3.5 7.2 0.7 109 chr3R 19348635 intergenic not near genes chr3R 19348690 intergenic not near genes chr3R 19348744 intergenic not near genes chr3R_6_19345001 chr3R_19345001 RAL-405 2214 chr3R 19348647 19348677 chr3R 19348732 19348776 15 95 7.0 3.5 5.2 2.4 129 chr3R 19348647 intergenic not near genes chr3R 19348712 intergenic not near genes chr3R 19348776 intergenic not near genes chr3R_15_19345001 chr3R_19345001 RAL-405 2215 chr3R 19494402 19494414 chr3R 19494492 19494514 7 99 7.0 11.0 9.0 0.7 112 chr3R 19494402 intron Dys + chr3R 19494458 intron Dys + chr3R 19494514 intron Dys + chr3R_7_19490001 chr3R_19490001 RAL-405 2216 chr3R 19505920 19505942 chr3R 19506039 19506056 5 115 5.5 5.0 5.2 0.8 136 chr3R 19505920 exon Dys + chr3R 19505988 intron Dys + chr3R 19506056 intron Dys + chr3R_5_19505001 chr3R_19505001 RAL-405 2217 chr3R 19505943 19505968 chr3R 19506032 19506087 9 103 4.0 3.5 3.8 1.9 144 chr3R 19505943 intron Dys + chr3R 19506015 intron Dys + chr3R 19506087 intron Dys + chr3R_9_19505001 chr3R_19505001 RAL-405 2218 chr3R 19590627 19590644 chr3R 19590739 19590756 5 112 0.5 2.0 1.2 2.3 129 chr3R 19590627 exon Dys + chr3R 19590692 intron Dys + chr3R 19590756 intron Dys + chr3R_5_19590001 chr3R_19590001 RAL-405 2219 chr3R 19602738 19602791 chr3R 19602836 19602874 16 90 8.0 6.0 7.0 2.0 136 chr3R 19602738 intergenic CG7333 + chr3R 19602806 intergenic CG7333 + chr3R 19602874 intergenic CG7333 +,CG7342 + chr3R_16_19600001 chr3R_19600001 RAL-405 2220 chr3R 19667986 19668025 chr3R 19668074 19668128 14 95 0.0 2.0 1.0 7.0 142 chr3R 19667986 intron CG7432 + chr3R 19668057 intron CG7432 + chr3R 19668128 intron CG7432 + chr3R_14_19665001 chr3R_19665001 RAL-405 2221 chr3R 19681586 19681632 chr3R 19681692 19681743 20 108 3.5 5.5 4.5 3.6 157 chr3R 19681586 intron Naam + chr3R 19681664 intron Naam + chr3R 19681743 intron Naam + chr3R_20_19680001 chr3R_19680001 RAL-405 2222 chr3R 19683253 19683271 chr3R 19683406 19683434 5 157 6.0 3.5 4.8 0.9 181 chr3R 19683253 intron Naam + chr3R 19683344 intron Naam + chr3R 19683434 intron Naam + chr3R_5_19680001 chr3R_19680001 RAL-405 2223 chr3R 19702301 19702351 chr3R 19702403 19702453 10 100 3.5 3.0 3.2 2.4 152 chr3R 19702301 intergenic not near genes chr3R 19702377 intergenic not near genes chr3R 19702453 intergenic not near genes chr3R_10_19700001 chr3R_19700001 RAL-405 2224 chr3R 19716215 19716242 chr3R 19716311 19716319 8 93 2.5 0.0 1.2 3.6 104 chr3R 19716215 intergenic CG34286 - chr3R 19716267 intergenic CG34286 - chr3R 19716319 intergenic CG34286 - chr3R_8_19715001 chr3R_19715001 RAL-405 2225 chr3R 19827510 19827553 chr3R 19827616 19827654 5 100 6.5 3.5 5.0 0.8 144 chr3R 19827510 intron bnl - chr3R 19827582 intron bnl - chr3R 19827654 exon bnl - chr3R_5_19825001 chr3R_19825001 RAL-405 2226 chr3R 19908282 19908301 chr3R 19908376 19908405 4 100 0.0 1.0 0.5 2.7 123 chr3R 19908282 intron RhoGAP92B + chr3R 19908344 intron RhoGAP92B + chr3R 19908405 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_4_19905001 chr3R_19905001 RAL-405 2227 chr3R 19913999 19914045 chr3R 19914102 19914142 17 110 6.5 5.0 5.8 2.5 143 chr3R 19913999 3` UTR RhoGAP92B + chr3R 19914070 3` UTR RhoGAP92B + chr3R 19914142 3` UTR RhoGAP92B + chr3R_17_19910001 chr3R_19910001 RAL-405 2228 chr3R 20008806 20008838 chr3R 20008902 20008939 12 96 7.0 1.5 4.2 2.3 133 chr3R 20008806 intergenic MED25 +,Hs6st - chr3R 20008872 intergenic MED25 +,Hs6st - chr3R 20008939 intergenic MED25 +,Hs6st - chr3R_12_20005001 chr3R_20005001 RAL-405 2229 chr3R 20096184 20096208 chr3R 20096282 20096314 5 110 2.0 7.0 4.5 0.9 130 chr3R 20096184 intergenic not near genes chr3R 20096249 intergenic not near genes chr3R 20096314 intergenic not near genes chr3R_5_20095001 chr3R_20095001 RAL-405 2230 chr3R 20109536 20109567 chr3R 20114752 20114768 copia 11 5223 4.5 8.5 6.5 1.5 5232 chr3R 20109536 intergenic not near genes chr3R 20112152 intergenic not near genes chr3R 20114768 intergenic CG10887 + chr3R_11_20110001 chr3R_20110001 RAL-405 2231 chr3R 20156685 20156707 chr3R 20165875 20165892 roo 7 9186 5.5 11.5 8.5 0.7 9207 chr3R 20156685 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-405 2232 chr3R 20156709 20156715 chr3R 20165862 20165894 roo 6 9178 5.5 9.0 7.2 0.7 9185 chr3R 20156709 intergenic not near genes chr3R 20161302 intergenic not near genes chr3R 20165894 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-405 2233 chr3R 20205552 20205596 chr3R 20205689 20205738 13 133 4.5 6.0 5.2 2.1 186 chr3R 20205552 intron Nlg4 + chr3R 20205645 intron Nlg4 + chr3R 20205738 intron Nlg4 + chr3R_13_20205001 chr3R_20205001 RAL-405 2234 chr3R 20209786 20209808 chr3R 20209887 20209914 9 104 6.5 7.5 7.0 1.1 128 chr3R 20209786 intron,5` UTR Nlg4 +,CG17199 - chr3R 20209850 intron Nlg4 + chr3R 20209914 intron Nlg4 + chr3R_9_20205001 chr3R_20205001 RAL-405 2235 chr3R 20209812 20209831 chr3R 20209885 20209937 9 98 4.5 7.5 6.0 1.3 125 chr3R 20209812 intron Nlg4 + chr3R 20209874 intron Nlg4 + chr3R 20209937 intron Nlg4 + chr3R_9_20205001 chr3R_20205001 RAL-405 2236 chr3R 20222534 20222572 chr3R 20222769 20222808 11 232 7.0 2.5 4.8 1.9 274 chr3R 20222534 intron Nlg4 + chr3R 20222671 intron Nlg4 + chr3R 20222808 intron Nlg4 + chr3R_11_20220001 chr3R_20220001 RAL-405 2237 chr3R 20236797 20236804 chr3R 20236892 20236900 4 95 13.0 9.0 11.0 0.3 103 chr3R 20236797 intron Nlg4 + chr3R 20236848 intron Nlg4 + chr3R 20236900 intron Nlg4 + chr3R_4_20235001 chr3R_20235001 RAL-405 2238 chr3R 20236805 20236848 chr3R 20236891 20236919 13 83 8.0 9.0 8.5 1.4 114 chr3R 20236805 intron Nlg4 + chr3R 20236862 intron Nlg4 + chr3R 20236919 intron Nlg4 + chr3R_13_20235001 chr3R_20235001 RAL-405 2239 chr3R 20258648 20258668 chr3R 20258747 20258772 9 99 11.5 6.5 9.0 0.9 124 chr3R 20258648 intron cic + chr3R 20258710 intron cic + chr3R 20258772 intron cic + chr3R_9_20255001 chr3R_20255001 RAL-405 2240 chr3R 20258672 20258682 chr3R 20258745 20258751 6 83 5.5 5.5 5.5 0.9 79 chr3R 20258672 intron cic + chr3R 20258712 intron cic + chr3R 20258751 intron cic + chr3R_6_20255001 chr3R_20255001 RAL-405 2241 chr3R 20266508 20266535 chr3R 20272998 20273026 Burdock 5 6485 5.5 3.0 4.2 1.0 6518 chr3R 20266508 intron cic + chr3R 20269767 intron cic + chr3R 20273026 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-405 2242 chr3R 20266536 20266545 chr3R 20272991 20273036 Burdock 5 6484 5.0 2.0 3.5 1.1 6500 chr3R 20266536 intron cic + chr3R 20269786 intron cic + chr3R 20273036 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-405 2243 chr3R 20282256 20282308 chr3R 20282352 20282394 22 93 1.5 0.5 1.0 11.0 138 chr3R 20282256 intron cic + chr3R 20282325 intron cic + chr3R 20282394 intron cic + chr3R_22_20280001 chr3R_20280001 RAL-405 2244 chr3R 20308170 20308220 chr3R 20308278 20308334 11 112 4.0 0.0 2.0 3.7 164 chr3R 20308170 intergenic not near genes chr3R 20308252 intergenic not near genes chr3R 20308334 intergenic not near genes chr3R_11_20305001 chr3R_20305001 RAL-405 2245 chr3R 20330987 20331032 chr3R 20331488 20331528 roo 23 501 5.5 7.5 6.5 3.1 541 chr3R 20330987 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331528 intergenic not near genes chr3R_23_20330001 chr3R_20330001 RAL-405 2246 chr3R 20431506 20431547 chr3R 20431617 20431659 18 115 3.5 5.5 4.5 3.3 153 chr3R 20431506 intron Gfrl - chr3R 20431582 intron Gfrl - chr3R 20431659 intron Gfrl - chr3R_18_20430001 chr3R_20430001 RAL-405 2247 chr3R 20434823 20434860 chr3R 20435028 20435059 9 200 5.0 1.5 3.2 2.1 236 chr3R 20434823 intron Gfrl - chr3R 20434941 intron Gfrl - chr3R 20435059 intron Gfrl - chr3R_9_20430001 chr3R_20430001 RAL-405 2248 chr3R 20469267 20469476 chr3R 20469380 20469574 17 101 0.5 0.0 0.2 14.2 307 chr3R 20469267 intron Gfrl - chr3R 20469420 intron Gfrl - chr3R 20469574 intron Gfrl - chr3R_17_20465001 chr3R_20465001 RAL-405 2249 chr3R 20503421 20503439 chr3R 20504125 20504142 4 703 2.0 3.0 2.5 1.1 721 chr3R 20503421 exon MtnB - chr3R 20503782 intergenic MtnB - chr3R 20504142 intergenic not near genes chr3R_4_20500001 chr3R_20500001 RAL-405 2250 chr3R 20512974 20513034 chr3R 20515708 20515757 opus 19 2721 0.0 8.5 4.2 3.7 2783 chr3R 20512974 intergenic not near genes chr3R 20514366 intergenic not near genes chr3R 20515757 intergenic not near genes chr3R_19_20510001 chr3R_20510001 RAL-405 2251 chr3R 20592761 20592814 chr3R 20592877 20592919 12 107 0.0 7.0 3.5 2.7 158 chr3R 20592761 intergenic CG4159 -,bon + chr3R 20592840 intergenic CG4159 -,bon + chr3R 20592919 intergenic bon +,CG4159 - chr3R_12_20590001 chr3R_20590001 RAL-405 2252 chr3R 20595073 20595091 chr3R 20595235 20595253 6 159 7.5 5.0 6.2 0.8 180 chr3R 20595073 intron bon + chr3R 20595163 intron bon + chr3R 20595253 intron bon + chr3R_6_20595001 chr3R_20595001 RAL-405 2253 chr3R 20657303 20657308 chr3R 20657468 20657473 4 165 8.5 5.0 6.8 0.5 170 chr3R 20657303 intron Nep4 - chr3R 20657388 intron Nep4 - chr3R 20657473 intron Nep4 - chr3R_4_20655001 chr3R_20655001 RAL-405 2254 chr3R 20657311 20657326 chr3R 20657466 20657491 7 161 5.5 4.5 5.0 1.2 180 chr3R 20657311 intron Nep4 - chr3R 20657401 intron Nep4 - chr3R 20657491 intron Nep4 - chr3R_7_20655001 chr3R_20655001 RAL-405 2255 chr3R 20669921 20669929 chr3R 20670022 20670040 5 109 14.0 3.5 8.8 0.5 119 chr3R 20669921 intron Cpr92F + chr3R 20669980 intron Cpr92F + chr3R 20670040 intron Cpr92F + chr3R_5_20665001 chr3R_20665001 RAL-405 2256 chr3R 20669930 20669951 chr3R 20670011 20670052 10 97 9.0 3.0 6.0 1.4 122 chr3R 20669930 intron Cpr92F + chr3R 20669991 intron Cpr92F + chr3R 20670052 intron Cpr92F + chr3R_10_20665001 chr3R_20665001 RAL-405 2257 chr3R 20716808 20716842 chr3R 20717145 20717199 6 345 1.5 1.5 1.5 2.4 391 chr3R 20716808 intergenic not near genes chr3R 20717004 intergenic not near genes chr3R 20717199 intergenic not near genes chr3R_6_20715001 chr3R_20715001 RAL-405 2258 chr3R 20730933 20730951 chr3R 20731034 20731051 10 106 9.5 1.0 5.2 1.6 118 chr3R 20730933 intergenic not near genes chr3R 20730992 intergenic not near genes chr3R 20731051 intergenic not near genes chr3R_10_20730001 chr3R_20730001 RAL-405 2259 chr3R 20733753 20733779 chr3R 20733860 20733891 6 104 7.0 3.0 5.0 1.0 138 chr3R 20733753 intergenic not near genes chr3R 20733822 intergenic not near genes chr3R 20733891 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-405 2260 chr3R 20733780 20733793 chr3R 20733858 20733874 4 89 3.0 3.0 3.0 1.0 94 chr3R 20733780 intergenic not near genes chr3R 20733827 intergenic not near genes chr3R 20733874 intergenic not near genes chr3R_4_20730001 chr3R_20730001 RAL-405 2261 chr3R 20771704 20771716 chr3R 20771800 20771812 7 97 0.5 8.5 4.5 1.3 108 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771758 intron,intron Syp +,Takl1 - chr3R 20771812 intron,exon Syp +,Takl1 - chr3R_7_20770001 chr3R_20770001 RAL-405 2262 chr3R 20848340 20848358 chr3R 20848445 20848463 6 107 1.0 8.5 4.8 1.0 123 chr3R 20848340 intergenic not near genes chr3R 20848402 intergenic not near genes chr3R 20848463 intergenic not near genes chr3R_6_20845001 chr3R_20845001 RAL-405 2263 chr3R 20850065 20850112 chr3R 20850170 20850211 14 101 0.5 1.5 1.0 7.0 146 chr3R 20850065 intergenic RpS30 + chr3R 20850138 intergenic RpS30 + chr3R 20850211 intergenic RpS30 + chr3R_14_20850001 chr3R_20850001 RAL-405 2264 chr3R 20870234 20870282 chr3R 20870334 20870387 10 97 1.5 3.0 2.2 3.1 153 chr3R 20870234 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870387 intergenic not near genes chr3R_10_20870001 chr3R_20870001 RAL-405 2265 chr3R 20901323 20901376 chr3R 20901429 20901441 12 96 1.0 2.5 1.8 4.3 118 chr3R 20901323 intergenic not near genes chr3R 20901382 intergenic not near genes chr3R 20901441 intergenic not near genes chr3R_12_20900001 chr3R_20900001 RAL-405 2266 chr3R 21015245 21015297 chr3R 21015352 21015394 17 102 8.5 4.5 6.5 2.3 149 chr3R 21015245 3` UTR Calx + chr3R 21015320 3` UTR Calx + chr3R 21015394 3` UTR Calx + chr3R_17_21015001 chr3R_21015001 RAL-405 2267 chr3R 21041091 21041127 chr3R 21041255 21041290 18 168 2.5 4.5 3.5 4.0 199 chr3R 21041091 exon Dhc93AB - chr3R 21041190 intron Dhc93AB - chr3R 21041290 intron Dhc93AB - chr3R_18_21040001 chr3R_21040001 RAL-405 2268 chr3R 21074811 21074832 chr3R 21075020 21075048 4 217 6.0 6.0 6.0 0.6 237 chr3R 21074811 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075048 intron dmrt93B + chr3R_4_21070001 chr3R_21070001 RAL-405 2269 chr3R 21129799 21130016 chr3R 21129908 21130113 15 96 0.5 0.0 0.2 12.5 314 chr3R 21129799 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129956 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130113 intergenic Ice2 +,Obp93a - chr3R_15_21125001 chr3R_21125001 RAL-405 2270 chr3R 21141685 21141704 chr3R 21150160 21150175 Tirant 5 8475 3.0 3.0 3.0 1.2 8490 chr3R 21141685 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150175 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-405 2271 chr3R 21189222 21189234 chr3R 21189341 21189346 4 117 10.0 5.5 7.8 0.5 124 chr3R 21189222 intron SNF4Agamma + chr3R 21189284 intron SNF4Agamma + chr3R 21189346 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-405 2272 chr3R 21189235 21189263 chr3R 21189332 21189367 17 109 6.0 3.5 4.8 2.9 132 chr3R 21189235 intron SNF4Agamma + chr3R 21189301 intron SNF4Agamma + chr3R 21189367 intron SNF4Agamma + chr3R_17_21185001 chr3R_21185001 RAL-405 2273 chr3R 21240447 21240479 chr3R 21240544 21240591 10 110 2.5 5.5 4.0 2.0 144 chr3R 21240447 intergenic not near genes chr3R 21240519 intergenic not near genes chr3R 21240591 intergenic not near genes chr3R_10_21240001 chr3R_21240001 RAL-405 2274 chr3R 21462846 21462893 chr3R 21463081 21463128 19 226 3.0 2.0 2.5 5.4 282 chr3R 21462846 intergenic not near genes chr3R 21462987 intergenic not near genes chr3R 21463128 intergenic not near genes chr3R_19_21460001 chr3R_21460001 RAL-405 2275 chr3R 21464385 21464404 chr3R 21464491 21464510 7 106 11.5 4.5 8.0 0.8 125 chr3R 21464385 intergenic not near genes chr3R 21464448 intergenic not near genes chr3R 21464510 intergenic not near genes chr3R_7_21460001 chr3R_21460001 RAL-405 2276 chr3R 21464415 21464428 chr3R 21464490 21464509 6 88 4.0 4.0 4.0 1.2 94 chr3R 21464415 intergenic not near genes chr3R 21464462 intergenic not near genes chr3R 21464509 intergenic not near genes chr3R_6_21460001 chr3R_21460001 RAL-405 2277 chr3R 21518253 21518271 chr3R 21518347 21518375 4 102 0.0 1.5 0.8 2.2 122 chr3R 21518253 intergenic not near genes chr3R 21518314 intergenic not near genes chr3R 21518375 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-405 2278 chr3R 21519978 21520146 chr3R 21520079 21520224 22 112 3.5 3.0 3.2 5.2 246 chr3R 21519978 intergenic not near genes chr3R 21520101 intergenic not near genes chr3R 21520224 intergenic not near genes chr3R_22_21520001 chr3R_21520001 RAL-405 2279 chr3R 21535465 21535512 chr3R 21535718 21535765 11 254 3.5 1.5 2.5 3.1 300 chr3R 21535465 intergenic CR44033 + chr3R 21535615 intergenic CR44033 + chr3R 21535765 intergenic CR44033 + chr3R_11_21535001 chr3R_21535001 RAL-405 2280 chr3R 21554813 21554856 chr3R 21554927 21554970 6 112 2.5 5.5 4.0 1.2 157 chr3R 21554813 intron slou - chr3R 21554892 intron slou - chr3R 21554970 intron slou - chr3R_6_21550001 chr3R_21550001 RAL-405 2281 chr3R 21582976 21583015 chr3R 21583097 21583126 6 116 1.5 4.0 2.8 1.6 150 chr3R 21582976 intron InR - chr3R 21583051 intron InR - chr3R 21583126 intron InR - chr3R_6_21580001 chr3R_21580001 RAL-405 2282 chr3R 21725667 21725685 chr3R 21725823 21725838 5 153 0.0 15.5 7.8 0.6 171 chr3R 21725667 intergenic not near genes chr3R 21725752 intergenic not near genes chr3R 21725838 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-405 2283 chr3R 21903614 21903629 chr3R 21903731 21903746 6 116 0.0 5.0 2.5 1.7 132 chr3R 21903614 intron CG6678 + chr3R 21903680 intron CG6678 + chr3R 21903746 intron CG6678 + chr3R_6_21900001 chr3R_21900001 RAL-405 2284 chr3R 21907534 21907534 chr3R 28831802 28831802 6 6924268 9.5 6.0 7.8 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-405 2285 chr3R 21907536 21907536 chr3R 28831801 28831802 5 6924266 10.5 5.5 8.0 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-405 2286 chr3R 21937211 21937233 chr3R 21937308 21937330 8 96 4.0 7.5 5.8 1.2 119 chr3R 21937211 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937330 intergenic not near genes chr3R_8_21935001 chr3R_21935001 RAL-405 2287 chr3R 21952118 21952166 chr3R 21952218 21952271 19 100 5.5 5.5 5.5 2.9 153 chr3R 21952118 intron Eip93F + chr3R 21952194 intron Eip93F + chr3R 21952271 intron Eip93F + chr3R_19_21950001 chr3R_21950001 RAL-405 2288 chr3R 21983120 21983151 chr3R 21983221 21983252 5 101 4.0 2.0 3.0 1.2 132 chr3R 21983120 intron Eip93F + chr3R 21983186 intron Eip93F + chr3R 21983252 intron Eip93F + chr3R_5_21980001 chr3R_21980001 RAL-405 2289 chr3R 21989100 21989119 chr3R 21989234 21989247 5 137 5.5 0.0 2.8 1.3 147 chr3R 21989100 intron Eip93F + chr3R 21989174 intron Eip93F + chr3R 21989247 intron Eip93F + chr3R_5_21985001 chr3R_21985001 RAL-405 2290 chr3R 22106887 22106893 chr3R 22107304 22107334 4 434 0.5 5.5 3.0 1.0 447 chr3R 22106887 intron CG5778 - chr3R 22107110 intron CG5778 - chr3R 22107334 intron CG5778 - chr3R_4_22105001 chr3R_22105001 RAL-405 2291 chr3R 22153566 22153579 chr3R 22153666 22153674 4 99 3.5 6.5 5.0 0.7 108 chr3R 22153566 intron SKIP + chr3R 22153620 intron SKIP + chr3R 22153674 intron SKIP + chr3R_4_22150001 chr3R_22150001 RAL-405 2292 chr3R 22234663 22234709 chr3R 22236002 22236030 pogo 11 1323 5.5 7.0 6.2 1.5 1367 chr3R 22234663 intron SKIP + chr3R 22235346 intron SKIP + chr3R 22236030 intron SKIP + chr3R_11_22235001 chr3R_22235001 RAL-405 2293 chr3R 22239476 22239525 chr3R 22248556 22248588 roo 6 9075 5.0 0.0 2.5 1.7 9112 chr3R 22239476 intron SKIP + chr3R 22244032 intron SKIP + chr3R 22248588 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-405 2294 chr3R 22346174 22346213 chr3R 22346265 22346317 12 94 4.0 4.0 4.0 2.4 143 chr3R 22346174 intergenic not near genes chr3R 22346246 intergenic not near genes chr3R 22346317 intergenic not near genes chr3R_12_22345001 chr3R_22345001 RAL-405 2295 chr3R 22450534 22450558 chr3R 22453189 22453196 NOF 5 2654 7.5 5.5 6.5 0.7 2662 chr3R 22450534 intron CG34376 + chr3R 22451865 intron CG34376 + chr3R 22453196 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-405 2296 chr3R 22538422 22538472 chr3R 22538526 22538537 16 97 0.5 6.0 3.2 3.8 115 chr3R 22538422 intron CG5326 - chr3R 22538480 intron CG5326 - chr3R 22538537 intron CG5326 - chr3R_16_22535001 chr3R_22535001 RAL-405 2297 chr3R 22661265 22661310 chr3R 22662315 22662336 8 1041 2.0 3.5 2.8 2.1 1071 chr3R 22661265 intron wake + chr3R 22661800 intron wake + chr3R 22662336 intron wake + chr3R_8_22660001 chr3R_22660001 RAL-405 2298 chr3R 22672282 22672326 chr3R 22672395 22672429 6 111 5.5 3.5 4.5 1.1 147 chr3R 22672282 intron wake + chr3R 22672356 intron wake + chr3R 22672429 intron wake + chr3R_6_22670001 chr3R_22670001 RAL-405 2299 chr3R 22727921 22727941 chr3R 22728012 22728030 6 94 13.5 6.5 10.0 0.5 109 chr3R 22727921 intron CG45049 + chr3R 22727976 intron CG45049 + chr3R 22728030 intron CG45049 + chr3R_6_22725001 chr3R_22725001 RAL-405 2300 chr3R 22727945 22727966 chr3R 22728011 22728062 16 88 8.0 7.0 7.5 1.9 117 chr3R 22727945 intron CG45049 + chr3R 22728004 intron CG45049 + chr3R 22728062 intron CG45049 + chr3R_16_22725001 chr3R_22725001 RAL-405 2301 chr3R 22769079 22769123 chr3R 22769171 22769213 16 89 3.5 5.5 4.5 2.9 134 chr3R 22769079 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769213 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_16_22765001 chr3R_22765001 RAL-405 2302 chr3R 22797788 22797934 chr3R 22797848 22798045 7 105 0.0 0.0 0.0 7.0 257 chr3R 22797788 intergenic not near genes chr3R 22797916 intergenic not near genes chr3R 22798045 intergenic not near genes chr3R_7_22795001 chr3R_22795001 RAL-405 2303 chr3R 22945944 22945946 chr3R 22946044 22946046 4 100 6.5 2.5 4.5 0.7 102 chr3R 22945944 intron klg + chr3R 22945995 intron klg + chr3R 22946046 intron klg + chr3R_4_22945001 chr3R_22945001 RAL-405 2304 chr3R 22993496 22993529 chr3R 22993641 22993654 5 138 1.0 0.0 0.5 3.3 158 chr3R 22993496 intron Nha2 - chr3R 22993575 intron Nha2 - chr3R 22993654 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-405 2305 chr3R 23034796 23034849 chr3R 23035229 23035282 21 427 2.5 4.5 3.5 4.7 486 chr3R 23034796 intron CG13833 - chr3R 23035039 intron CG13833 - chr3R 23035282 intron CG13833 - chr3R_21_23035001 chr3R_23035001 RAL-405 2306 chr3R 23090387 23090433 chr3R 23090487 23090536 7 101 1.0 2.5 1.8 2.5 149 chr3R 23090387 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090536 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-405 2307 chr3R 23091238 23091287 chr3R 23091343 23091392 13 103 5.5 6.5 6.0 1.9 154 chr3R 23091238 intron CG13830 - chr3R 23091315 intron CG13830 - chr3R 23091392 intron CG13830 - chr3R_13_23090001 chr3R_23090001 RAL-405 2308 chr3R 23197944 23197971 chr3R 23198043 23198060 9 94 5.0 7.0 6.0 1.3 116 chr3R 23197944 exon cnc - chr3R 23198002 intron cnc - chr3R 23198060 intron cnc - chr3R_9_23195001 chr3R_23195001 RAL-405 2309 chr3R 23211960 23211974 chr3R 23212058 23212072 5 98 2.5 7.0 4.8 0.9 112 chr3R 23211960 intron cnc - chr3R 23212016 intron cnc - chr3R 23212072 intron cnc - chr3R_5_23210001 chr3R_23210001 RAL-405 2310 chr3R 23260941 23260963 chr3R 23261038 23261039 6 95 5.5 1.0 3.2 1.4 98 chr3R 23260941 3` UTR orb - chr3R 23260990 3` UTR orb - chr3R 23261039 3` UTR orb - chr3R_6_23260001 chr3R_23260001 RAL-405 2311 chr3R 23260967 23260988 chr3R 23261037 23261091 5 88 1.5 1.0 1.2 2.3 124 chr3R 23260967 3` UTR orb - chr3R 23261029 3` UTR orb - chr3R 23261091 3` UTR orb - chr3R_5_23260001 chr3R_23260001 RAL-405 2312 chr3R 23324005 23324055 chr3R 23324111 23324161 21 99 4.0 5.0 4.5 3.8 156 chr3R 23324005 intron pnt - chr3R 23324083 intron pnt - chr3R 23324161 intron pnt - chr3R_21_23320001 chr3R_23320001 RAL-405 2313 chr3R 23356982 23356994 chr3R 23357078 23357100 5 103 10.0 7.0 8.5 0.5 118 chr3R 23356982 intron Sec13 + chr3R 23357041 intron Sec13 + chr3R 23357100 intron Sec13 + chr3R_5_23355001 chr3R_23355001 RAL-405 2314 chr3R 23360180 23360207 chr3R 23360276 23360303 10 94 0.0 4.5 2.2 3.1 123 chr3R 23360180 3` UTR RpS3 + chr3R 23360242 intergenic RpS3 + chr3R 23360303 intergenic RpS3 + chr3R_10_23360001 chr3R_23360001 RAL-405 2315 chr3R 23397088 23397121 chr3R 23397219 23397247 6 125 2.0 4.0 3.0 1.5 159 chr3R 23397088 intergenic not near genes chr3R 23397168 intergenic not near genes chr3R 23397247 intergenic not near genes chr3R_6_23395001 chr3R_23395001 RAL-405 2316 chr3R 23427401 23427445 chr3R 23427493 23427537 15 92 2.0 6.0 4.0 3.0 136 chr3R 23427401 intron CG4374 - chr3R 23427469 intron CG4374 - chr3R 23427537 intron CG4374 - chr3R_15_23425001 chr3R_23425001 RAL-405 2317 chr3R 23536928 23536980 chr3R 23537130 23537170 11 199 6.0 3.0 4.5 2.0 242 chr3R 23536928 intergenic CG10168 -,CG16732 - chr3R 23537049 exon CG10168 - chr3R 23537170 exon CG10168 - chr3R_11_23535001 chr3R_23535001 RAL-405 2318 chr3R 23550079 23550103 chr3R 23550188 23550188 6 107 8.0 1.5 4.8 1.0 109 chr3R 23550079 intergenic not near genes chr3R 23550134 intergenic not near genes chr3R 23550188 intergenic not near genes chr3R_6_23550001 chr3R_23550001 RAL-405 2319 chr3R 23558379 23558426 chr3R 23560180 23560227 Bari1 20 1794 7.0 1.5 4.2 3.8 1848 chr3R 23558379 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560227 intron beat-IV + chr3R_20_23555001 chr3R_23555001 RAL-405 2320 chr3R 23564430 23564458 chr3R 23564584 23564622 9 163 8.5 5.0 6.8 1.2 192 chr3R 23564430 intron beat-IV + chr3R 23564526 intron beat-IV + chr3R 23564622 intron beat-IV + chr3R_9_23560001 chr3R_23560001 RAL-405 2321 chr3R 23597852 23597886 chr3R 23597933 23597966 5 87 3.5 5.0 4.2 1.0 114 chr3R 23597852 exon CG10183 - chr3R 23597909 exon CG10183 - chr3R 23597966 intron CG10183 - chr3R_5_23595001 chr3R_23595001 RAL-405 2322 chr3R 23629810 23629846 chr3R 23629909 23629924 5 89 2.5 6.5 4.5 0.9 114 chr3R 23629810 intron CG31145 - chr3R 23629867 intron CG31145 - chr3R 23629924 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-405 2323 chr3R 23835392 23835430 chr3R 23844562 23844600 roo 17 9166 4.5 7.0 5.8 2.5 9208 chr3R 23835392 intron CG34355 + chr3R 23839996 intron CG34355 + chr3R 23844600 intron CG34355 + chr3R_17_23835001 chr3R_23835001 RAL-405 2324 chr3R 23851074 23851089 chr3R 23858761 23858776 opus 9 7687 6.0 16.0 11.0 0.8 7702 chr3R 23851074 3` UTR CG34355 + chr3R 23854925 intergenic not near genes chr3R 23858776 intergenic not near genes chr3R_9_23850001 chr3R_23850001 RAL-405 2325 chr3R 23868196 23868205 chr3R 23868290 23868301 4 93 6.0 3.0 4.5 0.7 105 chr3R 23868196 intron Pli - chr3R 23868248 intron Pli - chr3R 23868301 intron Pli - chr3R_4_23865001 chr3R_23865001 RAL-405 2326 chr3R 23868206 23868232 chr3R 23868289 23868320 4 89 4.0 3.0 3.5 0.9 114 chr3R 23868206 intron Pli - chr3R 23868263 intron Pli - chr3R 23868320 intron Pli - chr3R_4_23865001 chr3R_23865001 RAL-405 2327 chr3R 23910626 23910634 chr3R 23910717 23910725 5 94 2.5 3.0 2.8 1.3 99 chr3R 23910626 intron sba - chr3R 23910676 intron sba - chr3R 23910725 intron sba - chr3R_5_23910001 chr3R_23910001 RAL-405 2328 chr3R 23944912 23944930 chr3R 23944997 23945035 4 95 5.0 2.5 3.8 0.8 123 chr3R 23944912 intron CG12268 - chr3R 23944974 intron CG12268 - chr3R 23945035 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-405 2329 chr3R 23949031 23949070 chr3R 23949118 23949162 19 90 3.5 4.0 3.8 4.0 131 chr3R 23949031 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949162 intergenic not near genes chr3R_19_23945001 chr3R_23945001 RAL-405 2330 chr3R 23970696 23970738 chr3R 23970794 23970841 6 92 2.0 6.5 4.2 1.2 145 chr3R 23970696 intron CG31140 + chr3R 23970768 intron CG31140 + chr3R 23970841 intron CG31140 + chr3R_6_23970001 chr3R_23970001 RAL-405 2331 chr3R 24015075 24015092 chr3R 24015144 24015148 4 68 2.0 0.5 1.2 1.8 73 chr3R 24015075 intron KrT95D - chr3R 24015112 intron KrT95D - chr3R 24015148 intron KrT95D - chr3R_4_24015001 chr3R_24015001 RAL-405 2332 chr3R 24021616 24021660 chr3R 24021716 24021770 18 107 3.0 7.0 5.0 3.0 154 chr3R 24021616 intron KrT95D - chr3R 24021693 intron KrT95D - chr3R 24021770 intron KrT95D - chr3R_18_24020001 chr3R_24020001 RAL-405 2333 chr3R 24072094 24072122 chr3R 24072522 24072572 jockey 4 440 1.5 2.0 1.8 1.4 478 chr3R 24072094 intron 4EHP - chr3R 24072333 intron 4EHP - chr3R 24072572 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-405 2334 chr3R 24076898 24076937 chr3R 24078385 24078424 hobo 8 1486 4.0 4.5 4.2 1.5 1526 chr3R 24076898 intron 4EHP - chr3R 24077661 intron 4EHP - chr3R 24078424 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-405 2335 chr3R 24100437 24100481 chr3R 24100552 24100596 10 114 5.0 7.5 6.2 1.4 159 chr3R 24100437 intron 4EHP - chr3R 24100516 intron 4EHP - chr3R 24100596 intron 4EHP - chr3R_10_24100001 chr3R_24100001 RAL-405 2336 chr3R 24199734 24199765 chr3R 24199834 24199865 8 98 9.0 4.0 6.5 1.1 131 chr3R 24199734 intron twin - chr3R 24199800 intron twin - chr3R 24199865 intron twin - chr3R_8_24195001 chr3R_24195001 RAL-405 2337 chr3R 24207202 24207242 chr3R 24212298 24212307 flea 6 5086 2.0 8.5 5.2 1.0 5105 chr3R 24207202 intron twin - chr3R 24209754 intron twin - chr3R 24212307 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-405 2338 chr3R 24219089 24219111 chr3R 24219191 24219233 11 114 1.5 5.0 3.2 2.6 144 chr3R 24219089 intron twin - chr3R 24219161 intron twin - chr3R 24219233 intron twin - chr3R_11_24215001 chr3R_24215001 RAL-405 2339 chr3R 24340554 24340607 chr3R 24340677 24340720 16 122 9.5 9.5 9.5 1.5 166 chr3R 24340554 3` UTR CG6432 + chr3R 24340637 3` UTR CG6432 + chr3R 24340720 intergenic CG6432 + chr3R_16_24340001 chr3R_24340001 RAL-405 2340 chr3R 24359625 24359630 chr3R 24359733 24359733 4 107 7.0 10.0 8.5 0.4 108 chr3R 24359625 intron CG18528 - chr3R 24359679 intron CG18528 - chr3R 24359733 intron CG18528 - chr3R_4_24355001 chr3R_24355001 RAL-405 2341 chr3R 24426269 24426313 chr3R 24426540 24426590 15 272 6.0 4.5 5.2 2.4 321 chr3R 24426269 intron nAChRalpha1 - chr3R 24426430 intron nAChRalpha1 - chr3R 24426590 intron nAChRalpha1 - chr3R_15_24425001 chr3R_24425001 RAL-405 2342 chr3R 24433481 24433500 chr3R 24433555 24433599 10 94 3.0 1.0 2.0 3.3 118 chr3R 24433481 intron nAChRalpha1 - chr3R 24433540 intron nAChRalpha1 - chr3R 24433599 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-405 2343 chr3R 24493049 24493088 chr3R 24493155 24493194 22 101 7.0 9.0 8.0 2.4 145 chr3R 24493049 intergenic not near genes chr3R 24493122 intergenic not near genes chr3R 24493194 intergenic not near genes chr3R_22_24490001 chr3R_24490001 RAL-405 2344 chr3R 24493285 24493299 chr3R 24493531 24493547 BS 4 247 8.0 7.5 7.8 0.5 262 chr3R 24493285 intergenic not near genes chr3R 24493416 intergenic not near genes chr3R 24493547 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-405 2345 chr3R 24624358 24624396 chr3R 24624467 24624500 13 107 5.0 3.0 4.0 2.6 142 chr3R 24624358 intron Syx18 - chr3R 24624429 intron Syx18 - chr3R 24624500 exon Syx18 - chr3R_13_24620001 chr3R_24620001 RAL-405 2346 chr3R 24667590 24667633 chr3R 24667687 24667693 13 87 3.5 0.0 1.8 4.6 103 chr3R 24667590 intron slo + chr3R 24667642 intron slo + chr3R 24667693 intron slo + chr3R_13_24665001 chr3R_24665001 RAL-405 2347 chr3R 24670149 24670194 chr3R 24670248 24670278 15 98 4.0 6.0 5.0 2.5 129 chr3R 24670149 intron slo + chr3R 24670214 intron slo + chr3R 24670278 intron slo + chr3R_15_24670001 chr3R_24670001 RAL-405 2348 chr3R 24787529 24787549 chr3R 24787625 24787637 9 93 10.5 3.5 7.0 1.1 108 chr3R 24787529 intergenic CG5805 - chr3R 24787583 intergenic CG5805 -,Ets96B + chr3R 24787637 intergenic CG5805 -,Ets96B + chr3R_9_24785001 chr3R_24785001 RAL-405 2349 chr3R 24927117 24927130 chr3R 24931928 24931941 Doc 6 4809 13.5 4.0 8.8 0.6 4824 chr3R 24927117 intergenic Trf4-2 + chr3R 24929529 intergenic not near genes chr3R 24931941 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-405 2350 chr3R 24927131 24927157 chr3R 24931917 24931928 Doc 11 4801 5.5 3.5 4.5 2.0 4797 chr3R 24927131 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931928 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-405 2351 chr3R 24974900 24974935 chr3R 24974994 24975034 5 98 3.5 4.0 3.8 1.0 134 chr3R 24974900 intergenic not near genes chr3R 24974967 intergenic not near genes chr3R 24975034 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-405 2352 chr3R 25004896 25004916 chr3R 25004999 25005019 4 102 1.0 5.0 3.0 1.0 123 chr3R 25004896 intron tnc + chr3R 25004958 intron tnc + chr3R 25005019 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-405 2353 chr3R 25053105 25053163 chr3R 25053224 25053247 6 102 0.0 9.0 4.5 1.1 142 chr3R 25053105 intergenic CG11791 +,CG31109 - chr3R 25053176 intergenic CG11791 +,CG31109 - chr3R 25053247 intergenic CG31109 -,CG11791 + chr3R_6_25050001 chr3R_25050001 RAL-405 2354 chr3R 25166358 25166392 chr3R 25166438 25166477 8 87 7.5 3.0 5.2 1.3 119 chr3R 25166358 intergenic not near genes chr3R 25166418 intergenic not near genes chr3R 25166477 intergenic not near genes chr3R_8_25165001 chr3R_25165001 RAL-405 2355 chr3R 25368458 25368487 chr3R 25368591 25368611 12 134 4.5 0.0 2.2 3.8 153 chr3R 25368458 intron Fur1 - chr3R 25368534 intron Fur1 - chr3R 25368611 intron Fur1 - chr3R_12_25365001 chr3R_25365001 RAL-405 2356 chr3R 25411764 25411799 chr3R 25411875 25411922 8 114 0.5 2.5 1.5 3.2 158 chr3R 25411764 intron Fur1 - chr3R 25411843 intron Fur1 - chr3R 25411922 intron Fur1 - chr3R_8_25410001 chr3R_25410001 RAL-405 2357 chr3R 25429968 25429997 chr3R 25430169 25430198 15 199 9.0 2.0 5.5 2.3 230 chr3R 25429968 intron Fur1 - chr3R 25430083 intron Fur1 - chr3R 25430198 intron Fur1 - chr3R_15_25430001 chr3R_25430001 RAL-405 2358 chr3R 25431435 25431446 chr3R 25431530 25431547 7 103 2.0 7.5 4.8 1.2 112 chr3R 25431435 intron Fur1 - chr3R 25431491 intron Fur1 - chr3R 25431547 intron Fur1 - chr3R_7_25430001 chr3R_25430001 RAL-405 2359 chr3R 25434998 25435015 chr3R 25435121 25435146 4 133 2.5 3.0 2.8 1.1 148 chr3R 25434998 intron Fur1 - chr3R 25435072 intron Fur1 - chr3R 25435146 intron Fur1 - chr3R_4_25435001 chr3R_25435001 RAL-405 2360 chr3R 7773344 7773344 chr3R 25538124 25538124 8 17764780 28.0 16.0 22.0 0.3 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_8_16655001 chr3R_16655001 RAL-405 2361 chr3R 25614783 25614813 chr3R 25614954 25614974 13 169 8.5 0.0 4.2 2.5 191 chr3R 25614783 intron Npl4 - chr3R 25614878 intron Npl4 - chr3R 25614974 intron Npl4 - chr3R_13_25610001 chr3R_25610001 RAL-405 2362 chr3R 25720789 25720816 chr3R 25720896 25720921 4 106 0.0 3.0 1.5 1.6 132 chr3R 25720789 intron LpR2 - chr3R 25720855 intron LpR2 - chr3R 25720921 intron LpR2 - chr3R_4_25720001 chr3R_25720001 RAL-405 2363 chr3R 25720818 25720837 chr3R 25720895 25720917 4 78 0.0 2.5 1.2 1.8 99 chr3R 25720818 intron LpR2 - chr3R 25720868 intron LpR2 - chr3R 25720917 intron LpR2 - chr3R_4_25720001 chr3R_25720001 RAL-405 2364 chr3R 25725819 25725858 chr3R 25734994 25735038 roo 19 9178 9.0 9.5 9.2 1.9 9219 chr3R 25725819 intron LpR2 - chr3R 25730428 intron LpR2 - chr3R 25735038 intron LpR2 - chr3R_19_25730001 chr3R_25730001 RAL-405 2365 chr3R 25843615 25843664 chr3R 25843765 25843789 15 146 3.0 7.5 5.2 2.4 174 chr3R 25843615 intergenic CR45653 + chr3R 25843702 intergenic CR45653 + chr3R 25843789 intergenic CR45653 + chr3R_15_25840001 chr3R_25840001 RAL-405 2366 chr3R 25861811 25861850 chr3R 25861903 25861931 16 93 2.0 6.0 4.0 3.2 120 chr3R 25861811 intron CG5890 + chr3R 25861871 intron CG5890 + chr3R 25861931 intron CG5890 + chr3R_16_25860001 chr3R_25860001 RAL-405 2367 chr3R 25900884 25900898 chr3R 25903588 25903620 10 2707 18.0 29.0 23.5 0.4 2736 chr3R 25900884 exon CG31091 + chr3R 25902252 intergenic CG31091 +,CG31089 + chr3R 25903620 exon,intron CG31089 +,CR43259 - chr3R_10_25900001 chr3R_25900001 RAL-405 2368 chr3R 25920845 25920879 chr3R 25920941 25920980 7 95 4.5 2.5 3.5 1.6 135 chr3R 25920845 exon CG42235 + chr3R 25920912 3` UTR CG42235 + chr3R 25920980 3` UTR CG42235 + chr3R_7_25920001 chr3R_25920001 RAL-405 2369 chr3R 26121959 26121980 chr3R 26122051 26122097 4 106 0.0 4.5 2.2 1.2 138 chr3R 26121959 intron CG31324 + chr3R 26122028 intron CG31324 + chr3R 26122097 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-405 2370 chr3R 26122445 26122478 chr3R 26122541 26122574 9 88 2.5 4.0 3.2 2.1 129 chr3R 26122445 intron CG31324 + chr3R 26122510 intron CG31324 + chr3R 26122574 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-405 2371 chr3R 26126289 26126291 chr3R 26126373 26126416 4 114 1.0 3.0 2.0 1.3 127 chr3R 26126289 intron CG31324 + chr3R 26126352 intron CG31324 + chr3R 26126416 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-405 2372 chr3R 26245982 26246037 chr3R 26246225 26246270 14 241 7.5 1.0 4.2 2.7 288 chr3R 26245982 intron CR42745 + chr3R 26246126 intron CR42745 + chr3R 26246270 intron CR42745 + chr3R_14_26245001 chr3R_26245001 RAL-405 2373 chr3R 26294703 26294741 chr3R 26294796 26294824 14 91 8.5 4.0 6.2 1.9 121 chr3R 26294703 intergenic not near genes chr3R 26294764 intergenic not near genes chr3R 26294824 intergenic not near genes chr3R_14_26290001 chr3R_26290001 RAL-405 2374 chr3R 26374828 26374849 chr3R 26374945 26374971 9 120 5.5 5.5 5.5 1.4 143 chr3R 26374828 intergenic not near genes chr3R 26374900 intergenic not near genes chr3R 26374971 intergenic not near genes chr3R_9_26370001 chr3R_26370001 RAL-405 2375 chr3R 26376322 26376358 chr3R 26385484 26385501 roo 12 9170 4.5 7.5 6.0 1.7 9179 chr3R 26376322 intergenic not near genes chr3R 26380912 intergenic not near genes chr3R 26385501 intergenic not near genes chr3R_12_26380001 chr3R_26380001 RAL-405 2376 chr3R 26420382 26420428 chr3R 26420627 26420674 16 240 1.5 2.5 2.0 5.3 292 chr3R 26420382 intergenic not near genes chr3R 26420528 intergenic not near genes chr3R 26420674 intergenic not near genes chr3R_16_26420001 chr3R_26420001 RAL-405 2377 chr3R 26437731 26437778 chr3R 26437833 26437880 25 98 5.0 4.5 4.8 4.3 149 chr3R 26437731 intergenic not near genes chr3R 26437806 intergenic not near genes chr3R 26437880 intergenic not near genes chr3R_25_26435001 chr3R_26435001 RAL-405 2378 chr3R 26510503 26510535 chr3R 26519578 26519592 roo 10 9067 2.0 4.5 3.2 2.4 9089 chr3R 26510503 intron plum - chr3R 26515048 intron plum - chr3R 26519592 intron,5` UTR plum -,CR45226 + chr3R_10_26515001 chr3R_26515001 RAL-405 2379 chr3R 26541012 26541031 chr3R 26541111 26541130 8 96 3.0 12.0 7.5 0.9 118 chr3R 26541012 intron scrib + chr3R 26541071 intron scrib + chr3R 26541130 intron scrib + chr3R_8_26540001 chr3R_26540001 RAL-405 2380 chr3R 26558326 26558360 chr3R 26565638 26565687 Stalker4 10 7304 1.0 3.0 2.0 3.3 7361 chr3R 26558326 intron scrib + chr3R 26562006 intron scrib + chr3R 26565687 intron scrib + chr3R_10_26560001 chr3R_26560001 RAL-405 2381 chr3R 26641621 26641658 chr3R 26641725 26641748 5 94 7.0 2.0 4.5 0.9 127 chr3R 26641621 intergenic not near genes chr3R 26641684 intergenic not near genes chr3R 26641748 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-405 2382 chr3R 26642720 26642760 chr3R 26643123 26643174 jockey 12 404 6.0 6.5 6.2 1.7 454 chr3R 26642720 intergenic not near genes chr3R 26642947 intergenic not near genes chr3R 26643174 intergenic not near genes chr3R_12_26640001 chr3R_26640001 RAL-405 2383 chr3R 26669648 26669686 chr3R 26669744 26669777 20 100 6.5 3.5 5.0 3.3 129 chr3R 26669648 intron beat-VII - chr3R 26669712 intron beat-VII - chr3R 26669777 intron beat-VII - chr3R_20_26665001 chr3R_26665001 RAL-405 2384 chr3R 26710818 26710856 chr3R 26710912 26710960 14 98 5.0 6.0 5.5 2.2 142 chr3R 26710818 intron amon - chr3R 26710889 intron amon - chr3R 26710960 intron amon - chr3R_14_26710001 chr3R_26710001 RAL-405 2385 chr3R 26740279 26740321 chr3R 26740370 26740417 6 90 0.0 3.5 1.8 2.1 138 chr3R 26740279 intergenic not near genes chr3R 26740348 intergenic not near genes chr3R 26740417 intergenic not near genes chr3R_6_26740001 chr3R_26740001 RAL-405 2386 chr3R 26770223 26770269 chr3R 26770320 26770366 14 96 4.0 5.0 4.5 2.5 143 chr3R 26770223 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770366 intergenic not near genes chr3R_14_26770001 chr3R_26770001 RAL-405 2387 chr3R 26810547 26810579 chr3R 26811042 26811079 roo 11 500 7.0 5.0 6.0 1.6 532 chr3R 26810547 intron Tl + chr3R 26810813 intron Tl + chr3R 26811079 intron Tl + chr3R_11_26810001 chr3R_26810001 RAL-405 2388 chr3R 26927288 26927310 chr3R 26927427 26927479 12 162 2.0 2.0 2.0 4.0 191 chr3R 26927288 intron sda + chr3R 26927384 intron sda + chr3R 26927479 intron sda + chr3R_12_26925001 chr3R_26925001 RAL-405 2389 chr3R 27007400 27007420 chr3R 27016550 27016570 roo 4 9152 10.0 6.0 8.0 0.4 9170 chr3R 27007400 intron RYa-R + chr3R 27011985 intron RYa-R + chr3R 27016570 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-405 2390 chr3R 27007421 27007436 chr3R 27016541 27016541 roo 4 9127 5.5 3.5 4.5 0.7 9120 chr3R 27007421 intron RYa-R + chr3R 27011981 intron RYa-R + chr3R 27016541 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-405 2391 chr3R 27019505 27019524 chr3R 27019615 27019640 5 115 2.5 7.5 5.0 0.8 135 chr3R 27019505 intron,exon RYa-R +,CG17191 - chr3R 27019572 intron,exon RYa-R +,CG17191 - chr3R 27019640 intron,intron RYa-R +,CG17191 - chr3R_5_27015001 chr3R_27015001 RAL-405 2392 chr3R 27027661 27027703 chr3R 27027765 27027778 6 98 3.0 2.5 2.8 1.6 117 chr3R 27027661 intron RYa-R + chr3R 27027720 intron RYa-R + chr3R 27027778 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-405 2393 chr3R 27028709 27028752 chr3R 27028803 27028851 18 96 6.0 7.5 6.8 2.3 142 chr3R 27028709 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028851 intron RYa-R + chr3R_18_27025001 chr3R_27025001 RAL-405 2394 chr3R 27035846 27035872 chr3R 27035954 27035980 4 107 5.5 6.5 6.0 0.6 134 chr3R 27035846 intron RYa-R + chr3R 27035913 intron RYa-R + chr3R 27035980 intron RYa-R + chr3R_4_27035001 chr3R_27035001 RAL-405 2395 chr3R 27035874 27035884 chr3R 27035951 27035982 4 86 4.5 6.5 5.5 0.6 108 chr3R 27035874 intron RYa-R + chr3R 27035928 intron RYa-R + chr3R 27035982 intron RYa-R + chr3R_4_27035001 chr3R_27035001 RAL-405 2396 chr3R 27093672 27093702 chr3R 27093948 27093991 7 278 2.0 1.5 1.8 2.5 319 chr3R 27093672 exon CG14258 + chr3R 27093832 exon CG14258 + chr3R 27093991 exon CG14258 + chr3R_7_27090001 chr3R_27090001 RAL-405 2397 chr3R 27140504 27140539 chr3R 27148125 27148132 412 9 7620 4.5 5.0 4.8 1.6 7628 chr3R 27140504 intron CG6051 - chr3R 27144318 intron CG6051 - chr3R 27148132 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-405 2398 chr3R 27223429 27223468 chr3R 27223522 27223526 7 89 2.5 3.5 3.0 1.8 97 chr3R 27223429 intergenic not near genes chr3R 27223478 intergenic not near genes chr3R 27223526 intergenic not near genes chr3R_7_27220001 chr3R_27220001 RAL-405 2399 chr3R 27274694 27274725 chr3R 27274787 27274816 7 94 4.5 2.5 3.5 1.6 122 chr3R 27274694 intergenic CG5938 +,CG5934 + chr3R 27274755 intergenic CG5938 +,CG5934 + chr3R 27274816 5` UTR CG5938 + chr3R_7_27270001 chr3R_27270001 RAL-405 2400 chr3R 27323239 27323287 chr3R 27324001 27324049 7 754 1.0 4.0 2.5 2.0 810 chr3R 27323239 intergenic not near genes chr3R 27323644 intergenic not near genes chr3R 27324049 intergenic not near genes chr3R_7_27320001 chr3R_27320001 RAL-405 2401 chr3R 27329463 27329493 chr3R 27329559 27329590 14 94 4.5 3.0 3.8 2.9 127 chr3R 27329463 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329590 intergenic CG3330 - chr3R_14_27325001 chr3R_27325001 RAL-405 2402 chr3R 27335938 27335960 chr3R 27336039 27336061 7 94 0.5 1.0 0.8 3.9 123 chr3R 27335938 intergenic not near genes chr3R 27336000 intergenic not near genes chr3R 27336061 intergenic not near genes chr3R_7_27335001 chr3R_27335001 RAL-405 2403 chr3R 27342776 27342822 chr3R 27351377 27351423 Tirant 11 8594 5.5 5.0 5.2 1.8 8647 chr3R 27342776 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351423 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-405 2404 chr3R 27370114 27370138 chr3R 27370330 27370338 6 212 1.0 2.0 1.5 2.4 224 chr3R 27370114 intron CG42534 + chr3R 27370226 intron CG42534 + chr3R 27370338 intron CG42534 + chr3R_6_27370001 chr3R_27370001 RAL-405 2405 chr3R 27442276 27442311 chr3R 27443401 27443404 4 1116 1.0 0.0 0.5 2.7 1128 chr3R 27442276 intergenic not near genes chr3R 27442840 intergenic not near genes chr3R 27443404 intergenic not near genes chr3R_4_27440001 chr3R_27440001 RAL-405 2406 chr3R 27452569 27452610 chr3R 27452769 27452810 14 197 3.5 8.0 5.8 2.1 241 chr3R 27452569 intergenic not near genes chr3R 27452690 intergenic not near genes chr3R 27452810 intergenic not near genes chr3R_14_27450001 chr3R_27450001 RAL-405 2407 chr3R 27492360 27492406 chr3R 27492467 27492483 14 101 1.5 2.5 2.0 4.7 123 chr3R 27492360 intergenic not near genes chr3R 27492422 intergenic not near genes chr3R 27492483 intergenic not near genes chr3R_14_27490001 chr3R_27490001 RAL-405 2408 chr3R 27496583 27496593 chr3R 27496703 27496718 4 122 9.5 4.5 7.0 0.5 135 chr3R 27496583 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496718 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-405 2409 chr3R 27519025 27519040 chr3R 27519219 27519229 4 190 2.5 2.5 2.5 1.1 204 chr3R 27519025 intergenic not near genes chr3R 27519127 intergenic not near genes chr3R 27519229 intergenic not near genes chr3R_4_27515001 chr3R_27515001 RAL-405 2410 chr3R 27521135 27521187 chr3R 27530364 27530406 roo 24 9224 6.5 8.0 7.2 2.9 9271 chr3R 27521135 intron CG12885 + chr3R 27525770 intron CG12885 + chr3R 27530406 intron CG12885 + chr3R_24_27525001 chr3R_27525001 RAL-405 2411 chr3R 27615659 27615699 chr3R 27615798 27615843 5 136 1.0 1.5 1.2 2.3 184 chr3R 27615659 intron Tusp + chr3R 27615751 intron Tusp + chr3R 27615843 intron Tusp + chr3R_5_27615001 chr3R_27615001 RAL-405 2412 chr3R 27619695 27619730 chr3R 27619815 27619856 4 117 1.0 1.5 1.2 1.8 161 chr3R 27619695 intron Tusp + chr3R 27619776 intron Tusp + chr3R 27619856 intron Tusp + chr3R_4_27615001 chr3R_27615001 RAL-405 2413 chr3R 27627078 27627108 chr3R 27627190 27627209 4 104 2.0 1.5 1.8 1.4 131 chr3R 27627078 intron Tusp + chr3R 27627144 intron Tusp + chr3R 27627209 intron Tusp + chr3R_4_27625001 chr3R_27625001 RAL-405 2414 chr3R 27646547 27646589 chr3R 27646680 27646727 5 126 3.0 2.5 2.8 1.3 180 chr3R 27646547 intron tau - chr3R 27646637 intron tau - chr3R 27646727 intron tau - chr3R_5_27645001 chr3R_27645001 RAL-405 2415 chr3R 27705358 27705390 chr3R 27705458 27705490 5 93 1.0 1.0 1.0 2.5 132 chr3R 27705358 exon CG12428 - chr3R 27705424 intron CG12428 - chr3R 27705490 exon CG12428 - chr3R_5_27705001 chr3R_27705001 RAL-405 2416 chr3R 27718560 27718590 chr3R 27718659 27718689 9 99 2.5 0.5 1.5 3.6 129 chr3R 27718560 intergenic not near genes chr3R 27718624 intergenic not near genes chr3R 27718689 intergenic not near genes chr3R_9_27715001 chr3R_27715001 RAL-405 2417 chr3R 27747971 27748017 chr3R 27748069 27748089 9 91 2.5 3.5 3.0 2.2 118 chr3R 27747971 3` UTR Ets98B + chr3R 27748030 3` UTR Ets98B + chr3R 27748089 3` UTR Ets98B + chr3R_9_27745001 chr3R_27745001 RAL-405 2418 chr3R 27812406 27812458 chr3R 27812503 27812555 7 95 0.5 2.0 1.2 3.2 149 chr3R 27812406 intron CG34353 - chr3R 27812480 intron CG34353 - chr3R 27812555 intron CG34353 - chr3R_7_27810001 chr3R_27810001 RAL-405 2419 chr3R 27856740 27856789 chr3R 27858243 27858251 hopper2 10 1495 5.5 2.5 4.0 2.0 1511 chr3R 27856740 intron CG34353 - chr3R 27857496 intron CG34353 - chr3R 27858251 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-405 2420 chr3R 27862961 27862984 chr3R 27868260 27868271 Transpac 10 5310 3.0 1.5 2.2 3.1 5310 chr3R 27862961 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868271 intron CG34353 - chr3R_10_27865001 chr3R_27865001 RAL-405 2421 chr3R 27875696 27875732 chr3R 27882754 27882792 297 15 7067 4.5 6.0 5.2 2.4 7096 chr3R 27875696 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882792 intron CG34353 - chr3R_15_27875001 chr3R_27875001 RAL-405 2422 chr3R 28002904 28002924 chr3R 28002991 28003014 10 94 6.5 1.0 3.8 2.1 110 chr3R 28002904 intergenic not near genes chr3R 28002959 intergenic not near genes chr3R 28003014 intergenic not near genes chr3R_10_28000001 chr3R_28000001 RAL-405 2423 chr3R 28137689 28137717 chr3R 28137767 28137807 10 84 5.0 2.0 3.5 2.2 118 chr3R 28137689 intergenic not near genes chr3R 28137748 intergenic not near genes chr3R 28137807 intergenic not near genes chr3R_10_28135001 chr3R_28135001 RAL-405 2424 chr3R 28152329 28152357 chr3R 28152426 28152453 7 95 6.5 4.0 5.2 1.1 124 chr3R 28152329 intron CG34354 + chr3R 28152391 intron CG34354 + chr3R 28152453 intron CG34354 + chr3R_7_28150001 chr3R_28150001 RAL-405 2425 chr3R 28173658 28173700 chr3R 28181108 28181150 mdg1 12 7449 5.5 5.5 5.5 1.8 7492 chr3R 28173658 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181150 intron CG34354 + chr3R_12_28175001 chr3R_28175001 RAL-405 2426 chr3R 28253332 28253372 chr3R 28255841 28255882 jockey 11 2516 2.0 3.0 2.5 3.1 2550 chr3R 28253332 intergenic not near genes chr3R 28254607 intergenic not near genes chr3R 28255882 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-405 2427 chr3R 28273121 28273156 chr3R 28277638 28277668 7 4512 4.0 15.5 9.8 0.6 4547 chr3R 28273121 intergenic not near genes chr3R 28275394 intergenic not near genes chr3R 28277668 intergenic not near genes chr3R_7_28275001 chr3R_28275001 RAL-405 2428 chr3R 28302105 28302132 chr3R 28302542 28302591 jockey 7 452 7.5 8.5 8.0 0.8 486 chr3R 28302105 intergenic not near genes chr3R 28302348 intergenic not near genes chr3R 28302591 intergenic not near genes chr3R_7_28300001 chr3R_28300001 RAL-405 2429 chr3R 28331491 28331527 chr3R 28331585 28331626 11 96 7.5 4.0 5.8 1.6 135 chr3R 28331491 intron larp - chr3R 28331558 intron larp - chr3R 28331626 intron larp - chr3R_11_28330001 chr3R_28330001 RAL-405 2430 chr3R 28352493 28352521 chr3R 28352853 28352881 6 358 2.0 1.5 1.8 2.1 388 chr3R 28352493 exon Or98b + chr3R 28352687 exon Or98b + chr3R 28352881 exon Or98b + chr3R_6_28350001 chr3R_28350001 RAL-405 2431 chr3R 28352528 28352543 chr3R 28352852 28352903 6 347 1.0 1.5 1.2 2.7 375 chr3R 28352528 exon Or98b + chr3R 28352716 exon Or98b + chr3R 28352903 exon Or98b + chr3R_6_28350001 chr3R_28350001 RAL-405 2432 chr3R 28358838 28358876 chr3R 28359198 28359236 6 359 5.0 4.0 4.5 1.1 398 chr3R 28358838 intergenic not near genes chr3R 28359037 intergenic not near genes chr3R 28359236 intergenic not near genes chr3R_6_28355001 chr3R_28355001 RAL-405 2433 chr3R 28390125 28390138 chr3R 28390198 28390209 6 87 1.5 2.5 2.0 2.0 84 chr3R 28390125 intergenic not near genes chr3R 28390167 intergenic not near genes chr3R 28390209 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-405 2434 chr3R 28393685 28393729 chr3R 28393803 28393844 12 114 3.0 5.5 4.2 2.3 159 chr3R 28393685 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393844 intergenic not near genes chr3R_12_28390001 chr3R_28390001 RAL-405 2435 chr3R 28407714 28407733 chr3R 28407789 28407812 5 94 0.5 0.0 0.2 4.2 98 chr3R 28407714 intergenic not near genes chr3R 28407763 intergenic not near genes chr3R 28407812 intergenic not near genes chr3R_5_28405001 chr3R_28405001 RAL-405 2436 chr3R 28465286 28465330 chr3R 28465418 28465467 10 131 6.5 8.0 7.2 1.2 181 chr3R 28465286 intron beat-VI + chr3R 28465376 intron beat-VI + chr3R 28465467 intron beat-VI + chr3R_10_28465001 chr3R_28465001 RAL-405 2437 chr3R 28479144 28479167 chr3R 28479247 28479270 11 100 3.0 4.0 3.5 2.4 126 chr3R 28479144 intergenic not near genes chr3R 28479207 intergenic not near genes chr3R 28479270 intergenic not near genes chr3R_11_28475001 chr3R_28475001 RAL-405 2438 chr3R 28480310 28480324 chr3R 28480405 28480405 6 94 3.0 4.5 3.8 1.2 95 chr3R 28480310 intergenic not near genes chr3R 28480358 intergenic not near genes chr3R 28480405 intergenic not near genes chr3R_6_28480001 chr3R_28480001 RAL-405 2439 chr3R 28484356 28484373 chr3R 28486253 28486270 9 1898 88.0 78.5 83.2 0.1 1914 chr3R 28484356 intergenic CG1894 + chr3R 28485313 exon CG1894 + chr3R 28486270 intergenic CG1894 + chr3R_9_28485001 chr3R_28485001 RAL-405 2440 chr3R 28484354 28484395 chr3R 28486272 28486292 25 1908 113.0 51.0 82.0 0.3 1938 chr3R 28484354 intergenic CG1894 + chr3R 28485323 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_25_28485001 chr3R_28485001 RAL-405 2441 chr3R 28625480 28625508 chr3R 28625567 28625568 8 95 2.0 3.0 2.5 2.3 88 chr3R 28625480 intron CG10011 - chr3R 28625524 intron CG10011 - chr3R 28625568 intron CG10011 - chr3R_8_28625001 chr3R_28625001 RAL-405 2442 chr3R 28670604 28670648 chr3R 28670710 28670754 16 100 2.0 4.0 3.0 4.0 150 chr3R 28670604 intergenic CG9989 +,CG33346 + chr3R 28670679 intergenic CG9989 +,CG33346 + chr3R 28670754 exon CG9989 + chr3R_16_28670001 chr3R_28670001 RAL-405 2443 chr3R 28702909 28702955 chr3R 28703013 28703029 7 97 1.5 3.5 2.5 2.0 120 chr3R 28702909 intron htt + chr3R 28702969 intron htt + chr3R 28703029 intron htt + chr3R_7_28700001 chr3R_28700001 RAL-405 2444 chr3R 28753301 28753335 chr3R 28755109 28755109 7 1806 1.5 5.0 3.2 1.7 1808 chr3R 28753301 intergenic not near genes chr3R 28754205 intergenic not near genes chr3R 28755109 intergenic CG9997 - chr3R_7_28750001 chr3R_28750001 RAL-405 2445 chr3R 28758266 28758285 chr3R 28763902 28763912 roo 7 5634 7.5 0.5 4.0 1.4 5646 chr3R 28758266 intergenic aqrs - chr3R 28761089 intergenic not near genes chr3R 28763912 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-405 2446 chr3R 28763906 28763922 chr3R 28771354 28771360 Stalker4 10 7458 0.0 12.5 6.2 1.4 7454 chr3R 28763906 intergenic not near genes chr3R 28767633 intergenic not near genes chr3R 28771360 intergenic not near genes chr3R_10_28765001 chr3R_28765001 RAL-405 2447 chr3R 28785369 28785409 chr3R 28785469 28785509 9 94 9.0 3.5 6.2 1.2 140 chr3R 28785369 intergenic not near genes chr3R 28785439 intergenic not near genes chr3R 28785509 intergenic not near genes chr3R_9_28785001 chr3R_28785001 RAL-405 2448 chr3R 28792863 28792893 chr3R 28797968 28797979 jockey 4 5102 2.0 1.5 1.8 1.4 5116 chr3R 28792863 intergenic not near genes chr3R 28795421 intergenic not near genes chr3R 28797979 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-405 2449 chr3R 28811557 28811604 chr3R 28811719 28811770 24 162 5.5 7.5 6.5 3.2 213 chr3R 28811557 intergenic wdn - chr3R 28811664 intergenic wdn -,CG1646 + chr3R 28811770 intergenic CG1646 +,wdn - chr3R_24_28810001 chr3R_28810001 RAL-405 2450 chr3R 28830876 28830892 chr3R 28830974 28830985 5 97 15.5 6.5 11.0 0.4 109 chr3R 28830876 intron WASp - chr3R 28830930 intron WASp - chr3R 28830985 intron WASp - chr3R_5_28830001 chr3R_28830001 RAL-405 2451 chr3R 28830902 28830916 chr3R 28830972 28831014 7 85 8.0 6.0 7.0 0.9 112 chr3R 28830902 intron WASp - chr3R 28830958 intron WASp - chr3R 28831014 intron WASp - chr3R_7_28830001 chr3R_28830001 RAL-405 2452 chr3R 21907534 21907536 chr3R 28831802 28831802 5 6924267 10.5 6.0 8.2 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-405 2453 chr3R 28862128 28862156 chr3R 28862225 28862248 5 95 5.5 5.0 5.2 0.8 120 chr3R 28862128 intron spg + chr3R 28862188 intron spg + chr3R 28862248 intron spg + chr3R_5_28860001 chr3R_28860001 RAL-405 2454 chr3R 28947968 28948000 chr3R 28948084 28948112 12 124 4.0 4.5 4.2 2.3 144 chr3R 28947968 intron CG14521 - chr3R 28948040 intron CG14521 - chr3R 28948112 intron CG14521 - chr3R_12_28945001 chr3R_28945001 RAL-405 2455 chr3R 28968394 28968449 chr3R 28968491 28968546 21 91 5.0 4.5 4.8 3.6 152 chr3R 28968394 intron CG14521 - chr3R 28968470 intron CG14521 - chr3R 28968546 intron CG14521 - chr3R_21_28965001 chr3R_28965001 RAL-405 2456 chr3R 29034449 29034487 chr3R 29034551 29034580 5 99 16.0 5.5 10.8 0.4 131 chr3R 29034449 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R 29034514 intergenic Cpsf100 +,CR45044 + chr3R 29034580 5` UTR Cpsf100 + chr3R_5_29030001 chr3R_29030001 RAL-405 2457 chr3R 29070052 29070080 chr3R 29070143 29070181 11 94 8.5 8.0 8.2 1.2 129 chr3R 29070052 intron CG11873 + chr3R 29070116 intron CG11873 + chr3R 29070181 intron CG11873 + chr3R_11_29070001 chr3R_29070001 RAL-405 2458 chr3R 29090734 29090783 chr3R 29090871 29090920 17 132 5.0 9.5 7.2 2.1 186 chr3R 29090734 intron CG11873 + chr3R 29090827 intron CG11873 + chr3R 29090920 intron CG11873 + chr3R_17_29090001 chr3R_29090001 RAL-405 2459 chr3R 29128457 29128470 chr3R 29128576 29128594 8 123 14.5 6.0 10.2 0.7 137 chr3R 29128457 intergenic dgt6 -,CG11880 + chr3R 29128526 intergenic dgt6 -,CG11880 + chr3R 29128594 3` UTR dgt6 - chr3R_8_29125001 chr3R_29125001 RAL-405 2460 chr3R 29128471 29128499 chr3R 29128570 29128623 16 114 9.0 4.0 6.5 2.1 152 chr3R 29128471 intergenic dgt6 -,CG11880 + chr3R 29128547 intergenic dgt6 -,CG11880 + chr3R 29128623 3` UTR dgt6 - chr3R_16_29125001 chr3R_29125001 RAL-405 2461 chr3R 29203829 29203848 chr3R 29203929 29203948 10 99 7.5 0.0 3.8 2.1 119 chr3R 29203829 5` UTR CG14508 - chr3R 29203888 intron CG14508 - chr3R 29203948 intron CG14508 - chr3R_10_29200001 chr3R_29200001 RAL-405 2462 chr3R 29207520 29207539 chr3R 29207732 29207746 5 211 3.5 4.0 3.8 1.0 226 chr3R 29207520 intergenic not near genes chr3R 29207633 intergenic not near genes chr3R 29207746 intergenic not near genes chr3R_5_29205001 chr3R_29205001 RAL-405 2463 chr3R 29207541 29207549 chr3R 29207722 29207761 6 202 2.0 3.5 2.8 1.6 220 chr3R 29207541 intergenic not near genes chr3R 29207651 intergenic not near genes chr3R 29207761 intergenic not near genes chr3R_6_29205001 chr3R_29205001 RAL-405 2464 chr3R 29213050 29213088 chr3R 29213148 29213186 14 97 3.0 2.0 2.5 4.0 136 chr3R 29213050 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213186 intergenic not near genes chr3R_14_29210001 chr3R_29210001 RAL-405 2465 chr3R 29238756 29238791 chr3R 29238890 29238920 4 131 1.0 4.0 2.5 1.1 164 chr3R 29238756 intergenic CG11951 -,CG31427 - chr3R 29238838 3` UTR CG31427 - chr3R 29238920 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-405 2466 chr3R 29240293 29240342 chr3R 29240395 29240411 22 98 6.0 0.5 3.2 5.2 118 chr3R 29240293 intron CG31427 - chr3R 29240352 5` UTR CG31427 - chr3R 29240411 intergenic CG31427 -,CG31445 - chr3R_22_29240001 chr3R_29240001 RAL-405 2467 chr3R 29249894 29249922 chr3R 29249999 29250011 12 108 11.5 14.0 12.8 0.9 117 chr3R 29249894 intron SP1029 - chr3R 29249952 intron SP1029 - chr3R 29250011 intron SP1029 - chr3R_12_29245001 chr3R_29245001 RAL-405 2468 chr3R 29256258 29256300 chr3R 29256358 29256399 10 98 1.5 3.5 2.5 2.9 141 chr3R 29256258 intergenic CG45544 +,stg - chr3R 29256328 intergenic CG45544 + chr3R 29256399 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-405 2469 chr3R 29319825 29319861 chr3R 29320145 29320162 jockey 11 332 5.0 5.0 5.0 1.8 337 chr3R 29319825 intergenic Cnx99A - chr3R 29319994 intergenic Cnx99A - chr3R 29320162 intergenic not near genes chr3R_11_29315001 chr3R_29315001 RAL-405 2470 chr3R 29322769 29322782 chr3R 29322866 29322867 7 95 3.5 0.0 1.8 2.5 98 chr3R 29322769 intergenic not near genes chr3R 29322818 intergenic not near genes chr3R 29322867 intergenic not near genes chr3R_7_29320001 chr3R_29320001 RAL-405 2471 chr3R 29333877 29333899 chr3R 29334004 29334046 8 140 0.0 6.0 3.0 2.0 169 chr3R 29333877 intergenic not near genes chr3R 29333962 intergenic not near genes chr3R 29334046 intergenic not near genes chr3R_8_29330001 chr3R_29330001 RAL-405 2472 chr3R 29355940 29355991 chr3R 29356034 29356080 10 97 1.0 4.0 2.5 2.9 140 chr3R 29355940 intergenic CR45547 - chr3R 29356010 intergenic CR45547 - chr3R 29356080 intergenic CR45547 - chr3R_10_29355001 chr3R_29355001 RAL-405 2473 chr3R 29406599 29406650 chr3R 29407905 29407928 jockey 7 1300 2.0 4.5 3.2 1.7 1329 chr3R 29406599 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407928 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-405 2474 chr3R 29449346 29449370 chr3R 29449441 29449453 6 93 6.5 7.5 7.0 0.8 107 chr3R 29449346 intron Ptp99A + chr3R 29449400 intron Ptp99A + chr3R 29449453 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-405 2475 chr3R 29449371 29449389 chr3R 29449438 29449487 7 85 4.0 7.5 5.8 1.0 116 chr3R 29449371 intron Ptp99A + chr3R 29449429 intron Ptp99A + chr3R 29449487 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-405 2476 chr3R 29474197 29474222 chr3R 29474539 29474569 8 341 6.0 6.5 6.2 1.1 372 chr3R 29474197 intron Ptp99A + chr3R 29474383 intron Ptp99A + chr3R 29474569 intron Ptp99A + chr3R_8_29470001 chr3R_29470001 RAL-405 2477 chr3R 29505873 29505924 chr3R 29505970 29506021 10 95 11.0 5.5 8.2 1.1 148 chr3R 29505873 intergenic not near genes chr3R 29505947 intergenic not near genes chr3R 29506021 intergenic not near genes chr3R_10_29505001 chr3R_29505001 RAL-405 2478 chr3R 29579362 29579400 chr3R 29579466 29579475 5 94 3.0 3.5 3.2 1.2 113 chr3R 29579362 intergenic not near genes chr3R 29579418 intergenic not near genes chr3R 29579475 intergenic not near genes chr3R_5_29575001 chr3R_29575001 RAL-405 2479 chr3R 29581516 29581564 chr3R 29581617 29581655 14 97 2.0 6.0 4.0 2.8 139 chr3R 29581516 intergenic not near genes chr3R 29581586 intergenic not near genes chr3R 29581655 intergenic not near genes chr3R_14_29580001 chr3R_29580001 RAL-405 2480 chr3R 29655635 29655673 chr3R 29655734 29655744 13 95 5.0 3.5 4.2 2.5 109 chr3R 29655635 intron Dop1R2 - chr3R 29655690 intron Dop1R2 - chr3R 29655744 intron Dop1R2 - chr3R_13_29655001 chr3R_29655001 RAL-405 2481 chr3R 29738263 29738290 chr3R 29739733 29739775 hobo 11 1485 4.5 3.5 4.0 2.2 1512 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739019 intron CG1969 + chr3R 29739775 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-405 2482 chr3R 29760341 29760390 chr3R 29761562 29761611 pogo 26 1218 7.5 6.5 7.0 3.2 1270 chr3R 29760341 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761611 intergenic not near genes chr3R_26_29760001 chr3R_29760001 RAL-405 2483 chr3R 29880574 29880592 chr3R 29880674 29880692 4 98 1.5 4.5 3.0 1.0 118 chr3R 29880574 intron CG31038 + chr3R 29880633 intron CG31038 + chr3R 29880692 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-405 2484 chr3R 29882003 29882049 chr3R 29891180 29891226 roo 17 9172 4.5 4.0 4.2 3.3 9223 chr3R 29882003 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891226 intron CG31038 + chr3R_17_29885001 chr3R_29885001 RAL-405 2485 chr3R 30032142 30032174 chr3R 30032241 30032248 6 89 6.5 7.0 6.8 0.8 106 chr3R 30032142 intron Axn + chr3R 30032195 intron Axn + chr3R 30032248 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-405 2486 chr3R 30075567 30075589 chr3R 30075664 30075688 15 103 3.5 6.5 5.0 2.5 121 chr3R 30075567 intron sima + chr3R 30075628 intron sima + chr3R 30075688 intron sima + chr3R_15_30075001 chr3R_30075001 RAL-405 2487 chr3R 30082986 30083019 chr3R 30083082 30083104 4 93 4.0 4.0 4.0 0.8 118 chr3R 30082986 intron sima + chr3R 30083045 intron sima + chr3R 30083104 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-405 2488 chr3R 30084835 30084886 chr3R 30086315 30086358 hobo 9 1483 1.5 0.5 1.0 4.5 1523 chr3R 30084835 intron sima + chr3R 30085596 intron sima + chr3R 30086358 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-405 2489 chr3R 30118929 30118968 chr3R 30119010 30119016 7 80 3.0 4.0 3.5 1.6 87 chr3R 30118929 intron sima + chr3R 30118972 intron sima + chr3R 30119016 intron sima + chr3R_7_30115001 chr3R_30115001 RAL-405 2490 chr3R 30124940 30124973 chr3R 30125036 30125047 11 90 1.5 2.5 2.0 3.7 107 chr3R 30124940 intergenic CG45073 - chr3R 30124994 intergenic CG45073 - chr3R 30125047 intergenic CG45073 - chr3R_11_30120001 chr3R_30120001 RAL-405 2491 chr3R 30210595 30210674 chr3R 30210669 30210774 7 101 0.0 0.0 0.0 7.0 179 chr3R 30210595 intergenic Anp +,CecA1 + chr3R 30210684 intergenic CecA1 +,Anp + chr3R 30210774 intergenic CecA1 +,Anp + chr3R_7_30210001 chr3R_30210001 RAL-405 2492 chr3R 30224631 30224673 chr3R 30224729 30224770 15 94 6.0 2.0 4.0 3.0 139 chr3R 30224631 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224770 intergenic not near genes chr3R_15_30220001 chr3R_30220001 RAL-405 2493 chr3R 30238742 30238779 chr3R 30239926 30239963 1360 7 1179 8.0 0.0 4.0 1.4 1221 chr3R 30238742 intergenic not near genes chr3R 30239352 intergenic not near genes chr3R 30239963 intergenic not near genes chr3R_7_30235001 chr3R_30235001 RAL-405 2494 chr3R 30268244 30268447 chr3R 30268323 30268536 7 86 3.0 0.5 1.8 2.5 292 chr3R 30268244 intergenic not near genes chr3R 30268390 intergenic not near genes chr3R 30268536 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-405 2495 chr3R 30300710 30300729 chr3R 30300810 30300830 5 99 3.5 1.5 2.5 1.4 120 chr3R 30300710 intron hdc + chr3R 30300770 intron hdc + chr3R 30300830 intron hdc + chr3R_5_30300001 chr3R_30300001 RAL-405 2496 chr3R 30317348 30317358 chr3R 30324920 30324945 roo 5 7592 0.5 4.0 2.2 1.6 7597 chr3R 30317348 intron hdc + chr3R 30321146 intron hdc + chr3R 30324945 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-405 2497 chr3R 30375534 30375559 chr3R 30383177 30383202 412 9 7642 2.5 4.0 3.2 2.1 7668 chr3R 30375534 intergenic not near genes chr3R 30379368 intergenic not near genes chr3R 30383202 intergenic not near genes chr3R_9_30375001 chr3R_30375001 RAL-405 2498 chr3R 30396201 30396226 chr3R 30404487 30404512 roo 4 8286 9.0 4.0 6.5 0.5 8311 chr3R 30396201 intergenic not near genes chr3R 30400356 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-405 2499 chr3R 30396228 30396249 chr3R 30404484 30404525 roo 8 8278 6.5 3.5 5.0 1.3 8297 chr3R 30396228 intergenic not near genes chr3R 30400376 intergenic not near genes chr3R 30404525 5` UTR CR45570 + chr3R_8_30400001 chr3R_30400001 RAL-405 2500 chr3R 30410619 30410644 chr3R 30410705 30410720 5 81 4.5 3.0 3.8 1.0 101 chr3R 30410619 intergenic not near genes chr3R 30410670 intergenic not near genes chr3R 30410720 intergenic not near genes chr3R_5_30410001 chr3R_30410001 RAL-405 2501 chr3R 30456383 30456424 chr3R 30456484 30456515 8 98 3.0 8.5 5.8 1.2 132 chr3R 30456383 intergenic CG2224 - chr3R 30456449 3` UTR CG2224 - chr3R 30456515 3` UTR CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-405 2502 chr3R 30461495 30461521 chr3R 30461632 30461658 5 137 4.0 9.5 6.8 0.6 163 chr3R 30461495 intron CDase + chr3R 30461576 intron CDase + chr3R 30461658 intron CDase + chr3R_5_30460001 chr3R_30460001 RAL-405 2503 chr3R 30480481 30480508 chr3R 30482952 30482991 jockey 4 2481 1.5 8.0 4.8 0.7 2510 chr3R 30480481 intron PH4alphaEFB + chr3R 30481736 intron PH4alphaEFB + chr3R 30482991 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-405 2504 chr3R 30485038 30485070 chr3R 30485134 30485166 9 92 4.5 6.0 5.2 1.5 128 chr3R 30485038 intron PH4alphaEFB + chr3R 30485102 intron PH4alphaEFB + chr3R 30485166 intron PH4alphaEFB + chr3R_9_30485001 chr3R_30485001 RAL-405 2505 chr3R 30571679 30571714 chr3R 30571779 30571814 7 98 2.0 1.0 1.5 2.8 135 chr3R 30571679 intron tmod + chr3R 30571746 intron tmod + chr3R 30571814 exon tmod + chr3R_7_30570001 chr3R_30570001 RAL-405 2506 chr3R 30591316 30591339 chr3R 30591433 30591461 7 118 1.0 8.5 4.8 1.2 145 chr3R 30591316 intergenic not near genes chr3R 30591388 intergenic not near genes chr3R 30591461 intergenic not near genes chr3R_7_30590001 chr3R_30590001 RAL-405 2507 chr3R 30620907 30620949 chr3R 30621082 30621115 11 168 2.0 4.0 3.0 2.8 208 chr3R 30620907 intron CG44954 - chr3R 30621011 intron CG44954 - chr3R 30621115 intron CG44954 - chr3R_11_30620001 chr3R_30620001 RAL-405 2508 chr3R 30679541 30679551 chr3R 30686996 30687019 blood 6 7469 2.0 2.0 2.0 2.0 7478 chr3R 30679541 intergenic not near genes chr3R 30683280 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-405 2509 chr3R 30690151 30690175 chr3R 30690249 30690279 6 99 3.0 1.0 2.0 2.0 128 chr3R 30690151 intergenic Spn100A + chr3R 30690215 intergenic Spn100A + chr3R 30690279 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-405 2510 chr3R 30700847 30700877 chr3R 30700990 30701015 6 141 3.5 0.5 2.0 2.0 168 chr3R 30700847 intergenic not near genes chr3R 30700931 intergenic not near genes chr3R 30701015 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-405 2511 chr3R 30747542 30747573 chr3R 30747623 30747663 6 84 5.0 1.0 3.0 1.5 121 chr3R 30747542 intergenic CR43238 - chr3R 30747602 intergenic CR43238 - chr3R 30747663 intergenic CR43238 - chr3R_6_30745001 chr3R_30745001 RAL-405 2512 chr3R 30818793 30818815 chr3R 30820378 30820400 1360 10 1584 10.0 4.0 7.0 1.2 1607 chr3R 30818793 intron cindr + chr3R 30819596 intron cindr + chr3R 30820400 intron cindr + chr3R_10_30815001 chr3R_30815001 RAL-405 2513 chr3R 30818816 30818845 chr3R 30820376 30820395 1360 12 1576 8.0 4.0 6.0 1.7 1579 chr3R 30818816 intron cindr + chr3R 30819606 intron cindr + chr3R 30820395 intron cindr + chr3R_12_30815001 chr3R_30815001 RAL-405 2514 chr3R 30859393 30859421 chr3R 30859486 30859518 12 93 5.5 5.5 5.5 1.8 125 chr3R 30859393 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859518 intergenic not near genes chr3R_12_30855001 chr3R_30855001 RAL-405 2515 chr3R 30859422 30859427 chr3R 30859485 30859525 4 84 5.0 5.5 5.2 0.6 103 chr3R 30859422 intergenic not near genes chr3R 30859474 intergenic not near genes chr3R 30859525 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-405 2516 chr3R 31042092 31042144 chr3R 31042199 31042211 13 101 3.5 2.0 2.8 3.4 119 chr3R 31042092 intron CanA1 + chr3R 31042152 intron CanA1 + chr3R 31042211 intron CanA1 + chr3R_13_31040001 chr3R_31040001 RAL-405 2517 chr3R 31049465 31049503 chr3R 31049576 31049614 8 110 9.0 6.5 7.8 0.9 149 chr3R 31049465 intron Aph-4 + chr3R 31049540 intron Aph-4 + chr3R 31049614 intron Aph-4 + chr3R_8_31045001 chr3R_31045001 RAL-405 2518 chr3R 31049504 31049517 chr3R 31049575 31049628 8 104 5.0 6.0 5.5 1.2 124 chr3R 31049504 intron Aph-4 + chr3R 31049566 intron Aph-4 + chr3R 31049628 intron Aph-4 + chr3R_8_31045001 chr3R_31045001 RAL-405 2519 chr3R 31074235 31074258 chr3R 31081834 31081876 springer 7 7614 4.5 2.0 3.2 1.7 7641 chr3R 31074235 intron Sox100B + chr3R 31078056 intron Sox100B + chr3R 31081876 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-405 2520 chr3R 31100024 31100057 chr3R 31100142 31100175 11 114 4.5 3.0 3.8 2.3 151 chr3R 31100024 exon CG15553 - chr3R 31100100 exon CG15553 - chr3R 31100175 exon CG15553 - chr3R_11_31100001 chr3R_31100001 RAL-405 2521 chr3R 31278136 31278177 chr3R 31278228 31278267 6 77 2.5 1.5 2.0 2.0 131 chr3R 31278136 intergenic not near genes chr3R 31278202 intergenic not near genes chr3R 31278267 intergenic not near genes chr3R_6_31275001 chr3R_31275001 RAL-405 2522 chr3R 31426883 31426900 chr3R 31426987 31427007 4 109 2.0 13.5 7.8 0.5 124 chr3R 31426883 intron Gprk2 + chr3R 31426945 intron Gprk2 + chr3R 31427007 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-405 2523 chr3R 31426901 31426910 chr3R 31426975 31427022 5 104 2.0 8.0 5.0 0.8 121 chr3R 31426901 intron Gprk2 + chr3R 31426962 intron Gprk2 + chr3R 31427022 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-405 2524 chr3R 31435349 31435384 chr3R 31435521 31435551 6 165 8.0 8.0 8.0 0.7 202 chr3R 31435349 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435551 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-405 2525 chr3R 31442261 31442295 chr3R 31442356 31442395 10 96 2.0 2.0 2.0 3.3 134 chr3R 31442261 intron Gprk2 + chr3R 31442328 intron Gprk2 + chr3R 31442395 intron Gprk2 + chr3R_10_31440001 chr3R_31440001 RAL-405 2526 chr3R 31530811 31530848 chr3R 31531147 31531195 6 328 2.5 6.0 4.2 1.2 384 chr3R 31530811 intergenic not near genes chr3R 31531003 intergenic not near genes chr3R 31531195 intergenic not near genes chr3R_6_31530001 chr3R_31530001 RAL-405 2527 chr3R 31539328 31539345 chr3R 31539428 31539440 4 98 6.5 3.5 5.0 0.7 112 chr3R 31539328 intergenic not near genes chr3R 31539384 intergenic not near genes chr3R 31539440 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-405 2528 chr3R 31539854 31539884 chr3R 31539948 31539969 6 96 4.5 4.0 4.2 1.2 115 chr3R 31539854 intergenic not near genes chr3R 31539912 intergenic not near genes chr3R 31539969 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-405 2529 chr3R 31808774 31808800 chr3R 31808913 31808939 9 137 9.5 1.0 5.2 1.5 165 chr3R 31808774 intron CG11576 - chr3R 31808856 intron CG11576 - chr3R 31808939 intron CG11576 - chr3R_9_31805001 chr3R_31805001 RAL-405 2530 chr3R 31829366 31829413 chr3R 31829452 31829497 7 79 1.5 0.5 1.0 3.5 131 chr3R 31829366 intron RhoGAP100F + chr3R 31829432 intron RhoGAP100F + chr3R 31829497 intron RhoGAP100F + chr3R_7_31825001 chr3R_31825001 RAL-405 2531 chr3R 31848443 31848498 chr3R 31848637 31848670 13 185 6.5 2.0 4.2 2.5 227 chr3R 31848443 intergenic not near genes chr3R 31848556 intergenic not near genes chr3R 31848670 intergenic not near genes chr3R_13_31845001 chr3R_31845001 RAL-405 2532 chr3R 31874831 31874877 chr3R 31874927 31874956 10 91 2.5 1.5 2.0 3.3 125 chr3R 31874831 intron heph - chr3R 31874894 intron heph - chr3R 31874956 intron heph - chr3R_10_31870001 chr3R_31870001 RAL-405 2533 chr3R 31885659 31885704 chr3R 31885756 31885786 15 93 9.0 7.0 8.0 1.7 127 chr3R 31885659 intron heph - chr3R 31885722 intron heph - chr3R 31885786 intron heph - chr3R_15_31885001 chr3R_31885001 RAL-405 2534 chr3R 31930861 31930890 chr3R 31930981 31930985 4 114 6.0 0.0 3.0 1.0 124 chr3R 31930861 intron heph - chr3R 31930923 intron heph - chr3R 31930985 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-405 2535 chr3R 31931173 31931213 chr3R 31931276 31931316 16 101 6.0 5.0 5.5 2.5 143 chr3R 31931173 intron heph - chr3R 31931244 intron heph - chr3R 31931316 intron heph - chr3R_16_31930001 chr3R_31930001 RAL-405 2536 chr3R 31997978 31998008 chr3R 32005468 32005497 blood 5 7490 5.0 4.5 4.8 0.9 7519 chr3R 31997978 intron heph - chr3R 32001738 intron heph - chr3R 32005497 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-405 2537 chr3R 31998011 31998024 chr3R 32005464 32005499 blood 9 7477 3.5 4.0 3.8 1.9 7488 chr3R 31998011 intron heph - chr3R 32001755 intron heph - chr3R 32005499 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-405 2538 chr4 319977 320018 chr4 328168 328214 Stalker2 18 8193 5.5 7.5 6.5 2.4 8237 chr4 319977 3` UTR CG32850 + chr4 324096 intron CG32850 + chr4 328214 3` UTR,3` UTR CG32850 +,PMCA - chr4_18_320001 chr4_320001 RAL-405 2539 chr4 671584 671633 chr4 680187 680226 Tirant 12 8591 7.0 9.0 8.0 1.3 8642 chr4 671584 intron CG11360 + chr4 675905 intron CG11360 + chr4 680226 intron CG11360 + chr4_12_675001 chr4_675001 RAL-405 2540 chr4 959607 959651 chr4 959806 959850 16 194 4.5 5.0 4.8 2.8 243 chr4 959607 intergenic CR44030 +,CR45201 - chr4 959728 5` UTR CR44030 + chr4 959850 5` UTR CR44030 + chr4_16_955001 chr4_955001 RAL-405 2541 chr4 972481 972517 chr4 972573 972609 16 95 8.5 3.5 6.0 2.3 128 chr4 972481 intron fuss - chr4 972545 intron fuss - chr4 972609 intron fuss - chr4_16_970001 chr4_970001 RAL-405 2542 chr4 1182234 1182266 chr4 1182364 1182375 5 126 7.0 4.0 5.5 0.8 141 chr4 1182234 intergenic not near genes chr4 1182304 intergenic not near genes chr4 1182375 intergenic not near genes chr4_5_1180001 chr4_1180001 RAL-405 2543 chrX 295843 295882 chrX 303478 303522 412 6 7629 1.0 5.0 3.0 1.5 7679 chrX 295843 intron CG3777 + chrX 299682 intron CG3777 + chrX 303522 intron CG3777 + chrX_6_295001 chrX_295001 RAL-405 2544 chrX 318457 318502 chrX 323563 323573 flea 18 5102 4.0 4.0 4.0 3.6 5116 chrX 318457 intron,intron CG3777 +,CG32816 - chrX 321015 intron,intron CG3777 +,CG32816 - chrX 323573 intron,intron CG3777 +,CG32816 - chrX_18_320001 chrX_320001 RAL-405 2545 chrX 325623 325651 chrX 325727 325753 8 104 4.5 7.0 5.8 1.2 130 chrX 325623 intron,intron CG3777 +,CG32816 - chrX 325688 intron,intron CG3777 +,CG32816 - chrX 325753 intron,intron CG3777 +,CG32816 - chrX_8_325001 chrX_325001 RAL-405 2546 chrX 428422 428445 chrX 434602 434645 3S18 8 6199 7.5 5.0 6.2 1.1 6223 chrX 428422 intron CG32816 - chrX 431534 intron CG32816 - chrX 434645 intron CG32816 - chrX_8_430001 chrX_430001 RAL-405 2547 chrX 440979 441024 chrX 441071 441122 15 95 2.5 3.5 3.0 3.8 143 chrX 440979 intron CG32816 - chrX 441050 intron CG32816 - chrX 441122 intron CG32816 - chrX_15_440001 chrX_440001 RAL-405 2548 chrX 450347 450394 chrX 450444 450492 12 97 6.0 4.0 5.0 2.0 145 chrX 450347 intron CG32816 - chrX 450420 intron CG32816 - chrX 450492 intron CG32816 - chrX_12_450001 chrX_450001 RAL-405 2549 chrX 494608 494631 chrX 494687 494712 4 93 8.0 4.0 6.0 0.6 104 chrX 494608 intergenic CG17778 + chrX 494660 5` UTR CG17778 + chrX 494712 5` UTR CG17778 + chrX_4_490001 chrX_490001 RAL-405 2550 chrX 547616 547662 chrX 547880 547926 16 262 3.5 4.5 4.0 3.2 310 chrX 547616 intron Appl + chrX 547771 intron Appl + chrX 547926 intron Appl + chrX_16_545001 chrX_545001 RAL-405 2551 chrX 611118 611130 chrX 611228 611240 4 110 12.0 5.5 8.8 0.4 122 chrX 611118 intron CG13366 - chrX 611179 intron CG13366 - chrX 611240 intron CG13366 - chrX_4_610001 chrX_610001 RAL-405 2552 chrX 611135 611165 chrX 611225 611246 7 92 5.0 5.0 5.0 1.2 111 chrX 611135 intron CG13366 - chrX 611190 intron CG13366 - chrX 611246 intron CG13366 - chrX_7_610001 chrX_610001 RAL-405 2553 chrX 667627 667681 chrX 667731 667784 12 95 3.5 3.0 3.2 2.9 157 chrX 667627 intergenic not near genes chrX 667706 intergenic not near genes chrX 667784 intergenic not near genes chrX_12_665001 chrX_665001 RAL-405 2554 chrX 670284 670294 chrX 670360 670363 4 80 0.0 2.0 1.0 2.0 79 chrX 670284 intergenic not near genes chrX 670324 intergenic not near genes chrX 670363 intergenic not near genes chrX_4_670001 chrX_670001 RAL-405 2555 chrX 715271 715312 chrX 715357 715378 4 78 1.0 1.0 1.0 2.0 107 chrX 715271 intron sdk + chrX 715324 intron sdk + chrX 715378 intron sdk + chrX_4_715001 chrX_715001 RAL-405 2556 chrX 778108 778158 chrX 778216 778263 7 109 2.5 2.0 2.2 2.2 155 chrX 778108 intron fz3 + chrX 778186 intron fz3 + chrX 778263 intron fz3 + chrX_7_775001 chrX_775001 RAL-405 2557 chrX 780581 780599 chrX 780672 780689 5 93 3.0 1.0 2.0 1.7 108 chrX 780581 intron fz3 + chrX 780635 intron fz3 + chrX 780689 intron fz3 + chrX_5_780001 chrX_780001 RAL-405 2558 chrX 806775 806816 chrX 806891 806932 5 111 2.0 2.0 2.0 1.7 157 chrX 806775 intron Sec22 + chrX 806854 intron Sec22 + chrX 806932 intron Sec22 + chrX_5_805001 chrX_805001 RAL-405 2559 chrX 812271 812299 chrX 817896 817948 297 10 5641 4.0 3.5 3.8 2.1 5677 chrX 812271 intron CG43867 - chrX 815110 intron CG43867 - chrX 817948 intron CG43867 - chrX_10_815001 chrX_815001 RAL-405 2560 chrX 827601 827631 chrX 835398 835463 roo 5 7818 4.0 0.5 2.2 1.6 7862 chrX 827601 intron CG43867 - chrX 831532 intron CG43867 - chrX 835463 intron CG43867 - chrX_5_830001 chrX_830001 RAL-405 2561 chrX 868478 868505 chrX 868575 868584 6 90 4.5 1.0 2.8 1.6 106 chrX 868478 intron CG43867 - chrX 868531 intron CG43867 - chrX 868584 intron CG43867 - chrX_6_865001 chrX_865001 RAL-405 2562 chrX 906683 906712 chrX 908492 908521 S-element 10 1807 4.5 5.0 4.8 1.7 1838 chrX 906683 intron CG43867 - chrX 907602 intron CG43867 - chrX 908521 intron CG43867 - chrX_10_905001 chrX_905001 RAL-405 2563 chrX 1253719 1253762 chrX 1253816 1253856 7 100 1.0 2.5 1.8 2.5 137 chrX 1253719 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253856 intron Atf3 - chrX_7_1250001 chrX_1250001 RAL-405 2564 chrX 1357761 1357806 chrX 1367951 1367996 Doc 7 10186 5.0 4.0 4.5 1.3 10235 chrX 1357761 intergenic png - chrX 1362878 intergenic not near genes chrX 1367996 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-405 2565 chrX 1416402 1416419 chrX 1416486 1416503 4 90 2.0 2.5 2.2 1.2 101 chrX 1416402 intron futsch + chrX 1416452 intron futsch + chrX 1416503 intron futsch + chrX_4_1415001 chrX_1415001 RAL-405 2566 chrX 1518049 1518072 chrX 1523471 1523479 jockey 7 5415 1.0 9.0 5.0 1.2 5430 chrX 1518049 intergenic inc + chrX 1520764 intergenic not near genes chrX 1523479 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-405 2567 chrX 1570867 1570913 chrX 1570974 1570989 7 94 3.0 0.0 1.5 2.8 122 chrX 1570867 intron Mur2B - chrX 1570928 intron Mur2B - chrX 1570989 intron Mur2B - chrX_7_1570001 chrX_1570001 RAL-405 2568 chrX 1651638 1651652 chrX 1651739 1651743 5 97 8.5 8.5 8.5 0.5 105 chrX 1651638 intron Mur2B - chrX 1651690 intron Mur2B - chrX 1651743 intron Mur2B - chrX_5_1650001 chrX_1650001 RAL-405 2569 chrX 1930536 1930564 chrX 1938107 1938155 opus 6 7582 5.5 5.0 5.2 1.0 7619 chrX 1930536 intergenic CG11596 + chrX 1934346 intergenic not near genes chrX 1938155 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-405 2570 chrX 2399818 2399861 chrX 2408191 2408203 roo 5 8361 2.5 2.0 2.2 1.6 8385 chrX 2399818 intergenic not near genes chrX 2404010 intergenic not near genes chrX 2408203 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-405 2571 chrX 2429655 2429666 chrX 2429746 2429767 8 100 0.0 3.0 1.5 3.2 112 chrX 2429655 intergenic not near genes chrX 2429711 intergenic not near genes chrX 2429767 intergenic not near genes chrX_8_2425001 chrX_2425001 RAL-405 2572 chrX 2559343 2559389 chrX 2559451 2559497 14 106 2.5 3.0 2.8 3.7 154 chrX 2559343 intron Pdfr + chrX 2559420 intron Pdfr + chrX 2559497 intron Pdfr + chrX_14_2555001 chrX_2555001 RAL-405 2573 chrX 2578797 2578837 chrX 2578906 2578948 4 111 4.5 4.0 4.2 0.8 151 chrX 2578797 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578948 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-405 2574 chrX 2578838 2578844 chrX 2578898 2578948 4 92 4.0 3.5 3.8 0.8 110 chrX 2578838 intergenic Pdfr +,Vha36-3 - chrX 2578893 intergenic Vha36-3 -,Pdfr + chrX 2578948 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-405 2575 chrX 2610369 2610415 chrX 2617506 2617552 HMS-Beagle 7 7133 2.5 3.5 3.0 1.8 7183 chrX 2610369 intergenic CG8636 - chrX 2613960 intergenic not near genes chrX 2617552 intergenic Tsp3A - chrX_7_2610001 chrX_2610001 RAL-405 2576 chrX 2664375 2664391 chrX 2665531 2665552 1360 8 1164 8.0 6.5 7.2 1.0 1177 chrX 2664375 intron sgg + chrX 2664964 intron sgg + chrX 2665552 intron sgg + chrX_8_2660001 chrX_2660001 RAL-405 2577 chrX 2664396 2664415 chrX 2665529 2665561 1360 7 1152 5.0 6.0 5.5 1.1 1165 chrX 2664396 intron sgg + chrX 2664978 intron sgg + chrX 2665561 intron sgg + chrX_7_2660001 chrX_2660001 RAL-405 2578 chrX 2803475 2803527 chrX 2803638 2803680 5 154 2.0 0.0 1.0 2.5 205 chrX 2803475 intron kirre + chrX 2803578 intron kirre + chrX 2803680 intron kirre + chrX_5_2800001 chrX_2800001 RAL-405 2579 chrX 2886646 2886681 chrX 2886731 2886771 12 100 5.5 3.0 4.2 2.3 125 chrX 2886646 intron kirre + chrX 2886708 intron kirre + chrX 2886771 intron kirre + chrX_12_2885001 chrX_2885001 RAL-405 2580 chrX 3005816 3005840 chrX 3005908 3005939 6 97 1.5 7.0 4.2 1.2 123 chrX 3005816 intron kirre + chrX 3005878 intron kirre + chrX 3005939 intron kirre + chrX_6_3005001 chrX_3005001 RAL-405 2581 chrX 3058007 3058051 chrX 3058263 3058307 pogo 10 256 5.0 4.0 4.5 1.8 300 chrX 3058007 intron kirre + chrX 3058157 intron kirre + chrX 3058307 intron kirre + chrX_10_3055001 chrX_3055001 RAL-405 2582 chrX 3075616 3075648 chrX 3080943 3080963 Transpac 6 5318 4.5 5.0 4.8 1.0 5347 chrX 3075616 intron kirre + chrX 3078290 intron kirre + chrX 3080963 intron kirre + chrX_6_3075001 chrX_3075001 RAL-405 2583 chrX 3104460 3104479 chrX 3104839 3104858 5 379 0.5 6.0 3.2 1.2 398 chrX 3104460 intron kirre + chrX 3104659 intron kirre + chrX 3104858 intron kirre + chrX_5_3100001 chrX_3100001 RAL-405 2584 chrX 3109434 3109463 chrX 3109531 3109559 9 97 4.5 4.0 4.2 1.7 125 chrX 3109434 intron kirre + chrX 3109496 intron kirre + chrX 3109559 intron kirre + chrX_9_3105001 chrX_3105001 RAL-405 2585 chrX 3218491 3218512 chrX 3227660 3227681 roo 6 9166 5.0 8.5 6.8 0.8 9190 chrX 3218491 intron dnc + chrX 3223086 intron dnc + chrX 3227681 intron dnc + chrX_6_3220001 chrX_3220001 RAL-405 2586 chrX 3301372 3301409 chrX 3301456 3301493 9 92 1.5 1.5 1.5 3.6 121 chrX 3301372 intron dnc + chrX 3301432 intron dnc + chrX 3301493 intron dnc + chrX_9_3300001 chrX_3300001 RAL-405 2587 chrX 3306160 3306190 chrX 3306250 3306260 5 89 1.0 4.0 2.5 1.4 100 chrX 3306160 intron dnc + chrX 3306210 intron dnc + chrX 3306260 intron dnc + chrX_5_3305001 chrX_3305001 RAL-405 2588 chrX 3306198 3306374 chrX 3306248 3306476 9 95 5.0 3.5 4.2 1.7 278 chrX 3306198 intron dnc + chrX 3306337 intron dnc + chrX 3306476 intron dnc + chrX_9_3305001 chrX_3305001 RAL-405 2589 chrX 3414329 3414363 chrX 3414475 3414507 11 145 5.0 4.5 4.8 1.9 178 chrX 3414329 intron,intron CR44999 +,CG12535 - chrX 3414418 intron,intron CR44999 +,CG12535 - chrX 3414507 intron,intron CR44999 +,CG12535 - chrX_11_3410001 chrX_3410001 RAL-405 2590 chrX 3415019 3415043 chrX 3421209 3421244 3S18 7 6199 2.5 8.0 5.2 1.1 6225 chrX 3415019 intron,intron CR44999 +,CG12535 - chrX 3418132 intron,intron CR44999 +,CG12535 - chrX 3421244 intron,intron CR44999 +,CG12535 - chrX_7_3415001 chrX_3415001 RAL-405 2591 chrX 3481725 3481752 chrX 3481821 3481848 7 93 3.0 1.5 2.2 2.2 123 chrX 3481725 intron,intron CR44999 +,CG10804 - chrX 3481786 intron,intron CR44999 +,CG10804 - chrX 3481848 intron,intron CR44999 +,CG10804 - chrX_7_3480001 chrX_3480001 RAL-405 2592 chrX 3481760 3481769 chrX 3481816 3481865 8 89 2.5 1.5 2.0 2.7 105 chrX 3481760 intron,intron CR44999 +,CG10804 - chrX 3481812 intron,intron CR44999 +,CG10804 - chrX 3481865 intron,intron CR44999 +,CG10804 - chrX_8_3480001 chrX_3480001 RAL-405 2593 chrX 3493075 3493125 chrX 3502249 3502289 roo 4 9174 2.5 1.5 2.0 1.3 9214 chrX 3493075 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502289 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-405 2594 chrX 3597531 3597578 chrX 3619719 3619766 roo 9 22182 1.5 0.5 1.0 4.5 22235 chrX 3597531 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619766 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-405 2595 chrX 3626122 3626144 chrX 3626227 3626244 5 102 0.0 0.0 0.0 5.0 122 chrX 3626122 intron AstA-R1 + chrX 3626183 intron AstA-R1 + chrX 3626244 intron AstA-R1 + chrX_5_3625001 chrX_3625001 RAL-405 2596 chrX 3657399 3657440 chrX 3657499 3657535 8 96 2.5 6.0 4.2 1.5 136 chrX 3657399 intron AstA-R1 + chrX 3657467 intron AstA-R1 + chrX 3657535 intron AstA-R1 + chrX_8_3655001 chrX_3655001 RAL-405 2597 chrX 3703711 3703744 chrX 3703800 3703812 4 78 2.5 1.5 2.0 1.3 101 chrX 3703711 intergenic CR45102 + chrX 3703762 intergenic CR45102 + chrX 3703812 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-405 2598 chrX 3713105 3713129 chrX 3713234 3713258 8 128 7.0 8.5 7.8 0.9 153 chrX 3713105 intron Rala - chrX 3713182 intron Rala - chrX 3713258 intron Rala - chrX_8_3710001 chrX_3710001 RAL-405 2599 chrX 3768263 3768273 chrX 3768355 3768365 4 94 5.0 4.0 4.5 0.7 102 chrX 3768263 intron tlk + chrX 3768314 intron tlk + chrX 3768365 intron tlk + chrX_4_3765001 chrX_3765001 RAL-405 2600 chrX 3842333 3842352 chrX 3842571 3842583 pogo 5 236 0.5 2.0 1.2 2.3 250 chrX 3842333 intron ec + chrX 3842458 intron ec + chrX 3842583 intron ec + chrX_5_3840001 chrX_3840001 RAL-405 2601 chrX 3881252 3881292 chrX 3881411 3881451 7 159 1.5 0.5 1.0 3.5 199 chrX 3881252 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881451 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-405 2602 chrX 3986842 3986896 chrX 3994495 3994523 412 7 7646 3.5 0.0 1.8 2.5 7681 chrX 3986842 intergenic not near genes chrX 3990682 intergenic not near genes chrX 3994523 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-405 2603 chrX 4048480 4048523 chrX 4048576 4048619 12 90 6.0 4.0 5.0 2.0 139 chrX 4048480 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048619 3` UTR CR45482 - chrX_12_4045001 chrX_4045001 RAL-405 2604 chrX 4101885 4101900 chrX 4101944 4101979 5 84 0.5 3.5 2.0 1.7 94 chrX 4101885 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101979 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-405 2605 chrX 4157886 4157896 chrX 4164959 4164969 297 4 7073 4.0 5.0 4.5 0.7 7083 chrX 4157886 intron Fas2 - chrX 4161428 intron Fas2 - chrX 4164969 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-405 2606 chrX 4157912 4157920 chrX 4164955 4164993 297 4 7062 1.0 4.0 2.5 1.1 7081 chrX 4157912 intron Fas2 - chrX 4161452 intron Fas2 - chrX 4164993 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-405 2607 chrX 4296104 4296149 chrX 4296200 4296245 10 94 2.0 7.0 4.5 1.8 141 chrX 4296104 intergenic not near genes chrX 4296174 intergenic not near genes chrX 4296245 intergenic not near genes chrX_10_4295001 chrX_4295001 RAL-405 2608 chrX 4324395 4324409 chrX 4324471 4324506 8 91 3.5 3.5 3.5 1.8 111 chrX 4324395 intron norpA + chrX 4324450 intron norpA + chrX 4324506 intron norpA + chrX_8_4320001 chrX_4320001 RAL-405 2609 chrX 4343877 4343895 chrX 4344011 4344029 6 134 3.0 7.0 5.0 1.0 152 chrX 4343877 intron norpA + chrX 4343953 intron norpA + chrX 4344029 intron norpA + chrX_6_4340001 chrX_4340001 RAL-405 2610 chrX 4415289 4415339 chrX 4415385 4415394 12 88 7.0 5.5 6.2 1.7 105 chrX 4415289 intron,intron CR32773 -,bi + chrX 4415342 intron,intron CR32773 -,bi + chrX 4415394 intron,intron CR32773 -,bi + chrX_12_4415001 chrX_4415001 RAL-405 2611 chrX 4525323 4525360 chrX 4525438 4525461 8 109 2.0 3.0 2.5 2.3 138 chrX 4525323 intron CR32773 - chrX 4525392 intron CR32773 - chrX 4525461 intron CR32773 - chrX_8_4525001 chrX_4525001 RAL-405 2612 chrX 4660798 4660837 chrX 4660917 4660935 6 116 11.5 0.0 5.8 0.9 137 chrX 4660798 intron CG3009 - chrX 4660866 intron CG3009 - chrX 4660935 intron CG3009 - chrX_6_4660001 chrX_4660001 RAL-405 2613 chrX 4700371 4700425 chrX 4700734 4700788 jockey 14 358 1.5 4.0 2.8 3.7 417 chrX 4700371 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700788 3` UTR ctp + chrX_14_4700001 chrX_4700001 RAL-405 2614 chrX 4763236 4763282 chrX 4763744 4763775 Stalker4 11 504 1.0 3.5 2.2 3.4 539 chrX 4763236 intergenic not near genes chrX 4763506 intergenic not near genes chrX 4763775 intergenic not near genes chrX_11_4760001 chrX_4760001 RAL-405 2615 chrX 4792368 4792401 chrX 4792816 4792854 jockey 5 446 3.0 2.0 2.5 1.4 486 chrX 4792368 intergenic not near genes chrX 4792611 intergenic not near genes chrX 4792854 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-405 2616 chrX 4809001 4809051 chrX 4809126 4809166 14 122 3.5 1.0 2.2 4.4 165 chrX 4809001 intergenic not near genes chrX 4809084 intergenic not near genes chrX 4809166 intergenic not near genes chrX_14_4805001 chrX_4805001 RAL-405 2617 chrX 4827991 4827998 chrX 4835342 4835384 Stalker4 5 7370 3.0 3.5 3.2 1.2 7393 chrX 4827991 intergenic not near genes chrX 4831688 intergenic not near genes chrX 4835384 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-405 2618 chrX 4931326 4931375 chrX 4931440 4931483 9 112 65.5 55.5 60.5 0.1 157 chrX 4931326 intron CG44774 - chrX 4931404 intron CG44774 - chrX 4931483 intron CG44774 - chrX_9_4930001 chrX_4930001 RAL-405 2619 chrX 4946570 4946597 chrX 4946662 4946691 5 88 4.0 4.5 4.2 1.0 121 chrX 4946570 intron Ptp4E + chrX 4946630 intron Ptp4E + chrX 4946691 intron Ptp4E + chrX_5_4945001 chrX_4945001 RAL-405 2620 chrX 5076403 5076430 chrX 5076770 5076814 11 372 0.0 0.5 0.2 9.2 411 chrX 5076403 3` UTR CG32767 - chrX 5076608 3` UTR CG32767 - chrX 5076814 3` UTR CG32767 - chrX_11_5075001 chrX_5075001 RAL-405 2621 chrX 5096265 5096305 chrX 5103850 5103890 springer 11 7584 0.5 3.0 1.8 3.9 7625 chrX 5096265 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103890 intron,intron CG15465 +,rg + chrX_11_5100001 chrX_5100001 RAL-405 2622 chrX 5134796 5134821 chrX 5134912 5134936 7 117 4.0 6.5 5.2 1.1 140 chrX 5134796 intron,intron CG15465 +,rg + chrX 5134866 intron,intron CG15465 +,rg + chrX 5134936 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-405 2623 chrX 5134823 5134829 chrX 5134904 5134950 5 106 3.5 6.0 4.8 0.9 127 chrX 5134823 intron,intron CG15465 +,rg + chrX 5134886 intron,intron CG15465 +,rg + chrX 5134950 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-405 2624 chrX 5163963 5163999 chrX 5164068 5164104 5 102 5.5 4.0 4.8 0.9 141 chrX 5163963 5` UTR,intron CG15465 +,rg + chrX 5164034 5` UTR,intron CG15465 +,rg + chrX 5164104 5` UTR,intron CG15465 +,rg + chrX_5_5160001 chrX_5160001 RAL-405 2625 chrX 5291485 5291511 chrX 5291591 5291611 9 100 4.5 1.0 2.8 2.4 126 chrX 5291485 intergenic not near genes chrX 5291548 intergenic not near genes chrX 5291611 intergenic not near genes chrX_9_5290001 chrX_5290001 RAL-405 2626 chrX 5323056 5323157 chrX 5323337 5323441 7 281 0.0 0.0 0.0 7.0 385 chrX 5323056 intergenic Rnp4F - chrX 5323248 intergenic not near genes chrX 5323441 intergenic Mcm3 + chrX_7_5320001 chrX_5320001 RAL-405 2627 chrX 5329433 5329475 chrX 5329540 5329566 6 108 3.0 1.0 2.0 2.0 133 chrX 5329433 intergenic CG3309 -,XRCC1 + chrX 5329500 intergenic CG3309 -,XRCC1 + chrX 5329566 intergenic CG3309 -,XRCC1 + chrX_6_5325001 chrX_5325001 RAL-405 2628 chrX 5479166 5479173 chrX 5479265 5479268 4 98 3.0 3.0 3.0 1.0 102 chrX 5479166 intron SPR + chrX 5479217 intron SPR + chrX 5479268 intron SPR + chrX_4_5475001 chrX_5475001 RAL-405 2629 chrX 5512015 5512058 chrX 5512136 5512141 9 119 4.0 2.0 3.0 2.2 126 chrX 5512015 intergenic not near genes chrX 5512078 intergenic not near genes chrX 5512141 intergenic not near genes chrX_9_5510001 chrX_5510001 RAL-405 2630 chrX 5524823 5524855 chrX 5528702 5528728 412 6 3876 6.0 3.0 4.5 1.1 3905 chrX 5524823 intergenic snoRNA:Psi28S-3342 - chrX 5526776 intergenic not near genes chrX 5528728 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-405 2631 chrX 5798857 5798881 chrX 5799023 5799053 5 169 1.0 0.5 0.8 2.8 196 chrX 5798857 intergenic not near genes chrX 5798955 intergenic not near genes chrX 5799053 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-405 2632 chrX 5805375 5805399 chrX 5805559 5805573 4 180 7.0 6.5 6.8 0.5 198 chrX 5805375 intergenic Cpr5C + chrX 5805474 intergenic Cpr5C + chrX 5805573 intergenic Cpr5C + chrX_4_5805001 chrX_5805001 RAL-405 2633 chrX 5883816 5883841 chrX 5884051 5884097 pogo 5 252 3.0 8.0 5.5 0.8 281 chrX 5883816 intron CR45668 - chrX 5883956 intron CR45668 - chrX 5884097 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-405 2634 chrX 5884143 5884193 chrX 5884404 5884454 pogo 12 254 3.0 4.0 3.5 2.7 311 chrX 5884143 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884454 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-405 2635 chrX 5995372 5995399 chrX 5995457 5995494 9 97 1.0 4.5 2.8 2.4 122 chrX 5995372 intergenic not near genes chrX 5995433 intergenic not near genes chrX 5995494 intergenic not near genes chrX_9_5995001 chrX_5995001 RAL-405 2636 chrX 6003276 6003310 chrX 6003377 6003411 15 96 2.5 6.0 4.2 2.9 135 chrX 6003276 intron CR44498 + chrX 6003344 intron CR44498 + chrX 6003411 intron CR44498 + chrX_15_6000001 chrX_6000001 RAL-405 2637 chrX 6171580 6171603 chrX 6179027 6179028 Quasimodo 10 7443 7.0 2.0 4.5 1.8 7448 chrX 6171580 intron Ca-alpha1T - chrX 6175304 intron Ca-alpha1T - chrX 6179028 intron Ca-alpha1T - chrX_10_6175001 chrX_6175001 RAL-405 2638 chrX 6171604 6171614 chrX 6179017 6179039 Quasimodo 4 7432 4.5 2.0 3.2 1.0 7435 chrX 6171604 intron Ca-alpha1T - chrX 6175322 intron Ca-alpha1T - chrX 6179039 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-405 2639 chrX 6215348 6215367 chrX 6215426 6215445 8 92 1.0 1.5 1.2 3.6 97 chrX 6215348 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215445 intergenic not near genes chrX_8_6215001 chrX_6215001 RAL-405 2640 chrX 6388647 6388686 chrX 6388743 6388776 15 92 5.5 2.0 3.8 3.1 129 chrX 6388647 intergenic not near genes chrX 6388712 intergenic not near genes chrX 6388776 intergenic not near genes chrX_15_6385001 chrX_6385001 RAL-405 2641 chrX 6392890 6392896 chrX 6397630 6397661 Doc 6 4771 1.5 4.5 3.0 1.5 4771 chrX 6392890 intergenic not near genes chrX 6395276 intergenic not near genes chrX 6397661 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-405 2642 chrX 6445322 6445335 chrX 6451064 6451083 297 5 5759 4.5 3.0 3.8 1.0 5761 chrX 6445322 intron CG42340 - chrX 6448202 intron CG42340 - chrX 6451083 intron CG42340 - chrX_5_6445001 chrX_6445001 RAL-405 2643 chrX 6780128 6780169 chrX 6780240 6780287 8 115 3.5 0.0 1.8 2.9 159 chrX 6780128 intergenic shf - chrX 6780208 intergenic not near genes chrX 6780287 intergenic not near genes chrX_8_6780001 chrX_6780001 RAL-405 2644 chrX 6897588 6897709 chrX 6897686 6897830 12 118 1.0 1.5 1.2 5.5 242 chrX 6897588 intergenic not near genes chrX 6897709 intergenic not near genes chrX 6897830 intergenic not near genes chrX_12_6895001 chrX_6895001 RAL-405 2645 chrX 6989491 6989510 chrX 6989591 6989592 4 99 6.5 4.0 5.2 0.6 101 chrX 6989491 intron ogre - chrX 6989542 intron ogre - chrX 6989592 intron ogre - chrX_4_6985001 chrX_6985001 RAL-405 2646 chrX 6989516 6989526 chrX 6989588 6989625 4 91 4.5 3.0 3.8 0.8 109 chrX 6989516 intron ogre - chrX 6989570 intron ogre - chrX 6989625 intron ogre - chrX_4_6985001 chrX_6985001 RAL-405 2647 chrX 7023586 7023617 chrX 7030991 7031007 Tabor 7 7403 5.5 2.0 3.8 1.5 7421 chrX 7023586 intron CG12541 - chrX 7027296 intron CG12541 - chrX 7031007 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-405 2648 chrX 7033098 7033105 chrX 7033504 7033523 4 412 7.0 3.0 5.0 0.7 425 chrX 7033098 intron CG12541 - chrX 7033310 intron CG12541 - chrX 7033523 intron CG12541 - chrX_4_7030001 chrX_7030001 RAL-405 2649 chrX 7033111 7033123 chrX 7033499 7033546 6 409 3.0 3.0 3.0 1.5 435 chrX 7033111 exon CG12541 - chrX 7033328 intron CG12541 - chrX 7033546 intron CG12541 - chrX_6_7030001 chrX_7030001 RAL-405 2650 chrX 7125227 7125272 chrX 7134406 7134451 roo 8 9177 1.0 5.0 3.0 2.0 9224 chrX 7125227 intergenic not near genes chrX 7129839 intergenic not near genes chrX 7134451 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-405 2651 chrX 7322884 7322928 chrX 7322983 7323001 17 98 4.0 4.5 4.2 3.3 117 chrX 7322884 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322942 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323001 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_17_7320001 chrX_7320001 RAL-405 2652 chrX 7345185 7345213 chrX 7345296 7345320 8 110 2.0 3.5 2.8 2.1 135 chrX 7345185 intron,intron CR44357 -,CG1677 - chrX 7345252 intron,intron CR44357 -,CG1677 - chrX 7345320 intron,intron CR44357 -,CG1677 - chrX_8_7345001 chrX_7345001 RAL-405 2653 chrX 7350566 7350591 chrX 7350669 7350696 7 103 1.0 3.5 2.2 2.2 130 chrX 7350566 intron,intron CR44357 -,CG1677 - chrX 7350631 intron,intron CR44357 -,CG1677 - chrX 7350696 intron,intron CR44357 -,CG1677 - chrX_7_7350001 chrX_7350001 RAL-405 2654 chrX 7570638 7570663 chrX 7570772 7570817 5 144 2.0 3.0 2.5 1.4 179 chrX 7570638 intergenic not near genes chrX 7570728 intergenic not near genes chrX 7570817 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-405 2655 chrX 7702899 7702929 chrX 7703347 7703358 jockey 8 452 6.0 12.0 9.0 0.8 459 chrX 7702899 intron CHES-1-like - chrX 7703128 intron CHES-1-like - chrX 7703358 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-405 2656 chrX 7832416 7832464 chrX 7832525 7832568 12 102 5.5 2.0 3.8 2.5 152 chrX 7832416 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832568 intron CG1402 + chrX_12_7830001 chrX_7830001 RAL-405 2657 chrX 7845711 7845749 chrX 7847217 7847258 hopper2 6 1507 4.0 5.5 4.8 1.0 1547 chrX 7845711 intergenic not near genes chrX 7846484 intergenic not near genes chrX 7847258 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-405 2658 chrX 8031415 8031455 chrX 8035744 8035784 Juan 11 4328 8.0 8.0 8.0 1.2 4369 chrX 8031415 intergenic not near genes chrX 8033600 intergenic not near genes chrX 8035784 3` UTR CG2233 - chrX_11_8030001 chrX_8030001 RAL-405 2659 chrX 8085552 8085601 chrX 8085658 8085707 12 101 3.0 1.5 2.2 3.8 155 chrX 8085552 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085707 intron,5` UTR CG2256 -,CR45535 + chrX_12_8085001 chrX_8085001 RAL-405 2660 chrX 8188780 8188801 chrX 8188877 8188877 4 85 1.0 5.5 3.2 1.0 97 chrX 8188780 intron sdt + chrX 8188828 intron sdt + chrX 8188877 intron sdt + chrX_4_8185001 chrX_8185001 RAL-405 2661 chrX 8364843 8364879 chrX 8365246 8365279 BS 14 409 4.5 8.5 6.5 1.9 436 chrX 8364843 intron nAChRalpha3 - chrX 8365061 intron nAChRalpha3 - chrX 8365279 intron nAChRalpha3 - chrX_14_8365001 chrX_8365001 RAL-405 2662 chrX 8397306 8397324 chrX 8397408 8397428 4 104 24.0 28.5 26.2 0.1 122 chrX 8397306 3` UTR CG15345 - chrX 8397367 3` UTR CG15345 - chrX 8397428 3` UTR CG15345 - chrX_4_8395001 chrX_8395001 RAL-405 2663 chrX 8500913 8500939 chrX 8501097 8501123 13 182 9.0 0.0 4.5 2.4 210 chrX 8500913 intron CG33181 + chrX 8501018 intron CG33181 + chrX 8501123 intron CG33181 + chrX_13_8500001 chrX_8500001 RAL-405 2664 chrX 8500941 8500947 chrX 8501094 8501131 4 172 7.5 0.0 3.8 0.8 190 chrX 8500941 intron CG33181 + chrX 8501036 intron CG33181 + chrX 8501131 intron CG33181 + chrX_4_8500001 chrX_8500001 RAL-405 2665 chrX 8506019 8506043 chrX 8506112 8506141 4 92 5.5 5.0 5.2 0.6 122 chrX 8506019 intron CG33181 + chrX 8506080 intron CG33181 + chrX 8506141 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-405 2666 chrX 8506047 8506061 chrX 8506109 8506143 7 83 4.5 5.0 4.8 1.2 96 chrX 8506047 intron CG33181 + chrX 8506095 intron CG33181 + chrX 8506143 intron CG33181 + chrX_7_8505001 chrX_8505001 RAL-405 2667 chrX 8506510 8506533 chrX 8506738 8506754 10 225 9.0 0.5 4.8 1.7 244 chrX 8506510 intron CG33181 + chrX 8506632 intron CG33181 + chrX 8506754 intron CG33181 + chrX_10_8505001 chrX_8505001 RAL-405 2668 chrX 8605294 8605309 chrX 8605391 8605395 4 94 7.5 3.5 5.5 0.6 101 chrX 8605294 exon Caf1-180 - chrX 8605344 exon Caf1-180 - chrX 8605395 exon Caf1-180 - chrX_4_8605001 chrX_8605001 RAL-405 2669 chrX 8605314 8605345 chrX 8605389 8605412 9 82 7.0 3.5 5.2 1.5 98 chrX 8605314 exon Caf1-180 - chrX 8605363 exon Caf1-180 - chrX 8605412 exon Caf1-180 - chrX_9_8605001 chrX_8605001 RAL-405 2670 chrX 8658685 8658703 chrX 8658795 8658803 5 111 9.0 0.0 4.5 0.9 118 chrX 8658685 intergenic not near genes chrX 8658744 intergenic not near genes chrX 8658803 intergenic not near genes chrX_5_8655001 chrX_8655001 RAL-405 2671 chrX 8727419 8727429 chrX 8727491 8727526 8 93 1.0 5.5 3.2 1.9 107 chrX 8727419 intergenic not near genes chrX 8727472 intergenic not near genes chrX 8727526 intergenic not near genes chrX_8_8725001 chrX_8725001 RAL-405 2672 chrX 8856922 8856968 chrX 8857061 8857105 9 134 5.0 0.5 2.8 2.4 183 chrX 8856922 intron CG12075 + chrX 8857014 intron CG12075 + chrX 8857105 intron CG12075 + chrX_9_8855001 chrX_8855001 RAL-405 2673 chrX 8888624 8888661 chrX 8888716 8888758 13 91 3.5 1.0 2.2 4.1 134 chrX 8888624 intron Moe - chrX 8888691 intron Moe - chrX 8888758 intron Moe - chrX_13_8885001 chrX_8885001 RAL-405 2674 chrX 8922315 8922347 chrX 8922768 8922801 jockey 4 448 2.5 3.0 2.8 1.1 486 chrX 8922315 intron rdgA + chrX 8922558 intron rdgA + chrX 8922801 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-405 2675 chrX 8948739 8948790 chrX 8956269 8956320 roo 14 7524 4.0 5.0 4.5 2.5 7581 chrX 8948739 intron rdgA + chrX 8952530 intron rdgA + chrX 8956320 intron rdgA + chrX_14_8950001 chrX_8950001 RAL-405 2676 chrX 9041989 9042018 chrX 9042112 9042146 10 125 0.0 4.0 2.0 3.3 157 chrX 9041989 intron,intron CR43836 -,CG42388 + chrX 9042068 intron,intron CR43836 -,CG42388 + chrX 9042146 intron,intron CR43836 -,CG42388 + chrX_10_9040001 chrX_9040001 RAL-405 2677 chrX 9508124 9508169 chrX 9509662 9509674 jockey 12 1527 3.0 1.5 2.2 3.8 1550 chrX 9508124 intron CG32700 - chrX 9508899 intron CG32700 - chrX 9509674 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-405 2678 chrX 9575790 9575816 chrX 9576121 9576157 mdg3 5 337 4.5 5.0 4.8 0.9 367 chrX 9575790 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576157 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-405 2679 chrX 9577021 9577035 chrX 9577491 9577495 5 468 13.5 7.0 10.2 0.4 474 chrX 9577021 intron CG32699 - chrX 9577258 intron CG32699 - chrX 9577495 intron CG32699 - chrX_5_9575001 chrX_9575001 RAL-405 2680 chrX 9577042 9577064 chrX 9577486 9577504 11 451 7.0 6.0 6.5 1.5 462 chrX 9577042 intron CG32699 - chrX 9577273 intron CG32699 - chrX 9577504 intron CG32699 - chrX_11_9575001 chrX_9575001 RAL-405 2681 chrX 9599152 9599196 chrX 9599250 9599294 5 87 2.5 1.5 2.0 1.7 142 chrX 9599152 intergenic not near genes chrX 9599223 intergenic not near genes chrX 9599294 intergenic not near genes chrX_5_9595001 chrX_9595001 RAL-405 2682 chrX 9758058 9758082 chrX 9758143 9758187 6 96 3.0 0.5 1.8 2.1 129 chrX 9758058 intergenic not near genes chrX 9758122 intergenic not near genes chrX 9758187 intergenic not near genes chrX_6_9755001 chrX_9755001 RAL-405 2683 chrX 9839323 9839372 chrX 9839426 9839474 4 96 0.0 1.5 0.8 2.2 151 chrX 9839323 intron CG32698 + chrX 9839398 intron CG32698 + chrX 9839474 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-405 2684 chrX 9841367 9841390 chrX 9843743 9843752 5 2368 12.5 17.0 14.8 0.3 2385 chrX 9841367 intron CG32698 + chrX 9842560 intron CG32698 + chrX 9843752 intron CG32698 + chrX_5_9840001 chrX_9840001 RAL-405 2685 chrX 10138198 10138248 chrX 10145722 10145772 412 17 7522 2.5 10.5 6.5 2.3 7574 chrX 10138198 intron,intron RhoU +,CR44894 - chrX 10141985 intron,intron RhoU +,CR44894 - chrX 10145772 intron,intron RhoU +,CR44894 - chrX_17_10140001 chrX_10140001 RAL-405 2686 chrX 10248621 10248658 chrX 10248708 10248746 12 91 5.5 3.0 4.2 2.3 125 chrX 10248621 intron Hk - chrX 10248684 intron Hk - chrX 10248746 intron Hk - chrX_12_10245001 chrX_10245001 RAL-405 2687 chrX 10267316 10267334 chrX 10276459 10276499 roo 8 9162 1.0 8.5 4.8 1.4 9183 chrX 10267316 3` UTR alpha-Man-I - chrX 10271908 intron alpha-Man-I - chrX 10276499 3` UTR alpha-Man-I - chrX_8_10270001 chrX_10270001 RAL-405 2688 chrX 10306044 10306068 chrX 10306145 10306157 6 99 7.0 0.5 3.8 1.2 113 chrX 10306044 intron alpha-Man-I - chrX 10306100 intron alpha-Man-I - chrX 10306157 intron alpha-Man-I - chrX_6_10305001 chrX_10305001 RAL-405 2689 chrX 10317545 10317579 chrX 10317638 10317677 12 93 1.0 5.5 3.2 2.9 132 chrX 10317545 intron alpha-Man-I - chrX 10317611 intron alpha-Man-I - chrX 10317677 intron alpha-Man-I - chrX_12_10315001 chrX_10315001 RAL-405 2690 chrX 10348792 10348821 chrX 10356367 10356406 springer 11 7578 4.5 3.0 3.8 2.3 7614 chrX 10348792 intergenic snoRNA:U3:9B + chrX 10352599 intergenic not near genes chrX 10356406 intergenic l(1)G0289 - chrX_11_10350001 chrX_10350001 RAL-405 2691 chrX 10369097 10369127 chrX 10369277 10369289 7 176 6.0 3.0 4.5 1.3 192 chrX 10369097 intron CG17841 + chrX 10369193 intron CG17841 + chrX 10369289 intron CG17841 + chrX_7_10365001 chrX_10365001 RAL-405 2692 chrX 10428864 10428887 chrX 10428974 10428997 5 106 3.5 4.5 4.0 1.0 133 chrX 10428864 intron CG32683 - chrX 10428930 intron CG32683 - chrX 10428997 intron CG32683 - chrX_5_10425001 chrX_10425001 RAL-405 2693 chrX 10446667 10446716 chrX 10446769 10446818 13 99 3.5 4.5 4.0 2.6 151 chrX 10446667 intron CG32683 - chrX 10446742 intron CG32683 - chrX 10446818 intron CG32683 - chrX_13_10445001 chrX_10445001 RAL-405 2694 chrX 10550320 10550364 chrX 10550412 10550451 11 95 1.5 2.0 1.8 3.9 131 chrX 10550320 intron spri - chrX 10550386 intron spri - chrX 10550451 intron spri - chrX_11_10550001 chrX_10550001 RAL-405 2695 chrX 10651623 10651633 chrX 10651754 10651769 4 134 7.0 6.0 6.5 0.5 146 chrX 10651623 intron X11Lbeta + chrX 10651696 intron X11Lbeta + chrX 10651769 intron X11Lbeta + chrX_4_10650001 chrX_10650001 RAL-405 2696 chrX 10651636 10651646 chrX 10651753 10651766 9 125 5.0 6.0 5.5 1.4 130 chrX 10651636 intron X11Lbeta + chrX 10651701 intron X11Lbeta + chrX 10651766 intron X11Lbeta + chrX_9_10650001 chrX_10650001 RAL-405 2697 chrX 10686030 10686084 chrX 10691187 10691241 roo 13 5156 5.5 3.5 4.5 2.4 5211 chrX 10686030 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691241 intron X11Lbeta + chrX_13_10685001 chrX_10685001 RAL-405 2698 chrX 10719127 10719149 chrX 10719211 10719245 10 96 0.0 4.0 2.0 3.3 118 chrX 10719127 intron CG32676 - chrX 10719186 intron CG32676 - chrX 10719245 intron CG32676 - chrX_10_10715001 chrX_10715001 RAL-405 2699 chrX 11058156 11058191 chrX 11058249 11058300 9 106 4.5 2.5 3.5 2.0 144 chrX 11058156 intron CG1545 - chrX 11058228 intron CG1545 - chrX 11058300 intron CG1545 - chrX_9_11055001 chrX_11055001 RAL-405 2700 chrX 11096003 11096008 chrX 11103125 11103130 HMS-Beagle 5 7122 9.0 12.5 10.8 0.4 7127 chrX 11096003 intergenic not near genes chrX 11099566 intergenic not near genes chrX 11103130 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-405 2701 chrX 11096012 11096023 chrX 11103109 11103145 HMS-Beagle 4 7110 6.5 10.0 8.2 0.4 7133 chrX 11096012 intergenic not near genes chrX 11099578 intergenic not near genes chrX 11103145 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-405 2702 chrX 11184227 11184280 chrX 11189326 11189360 flea 7 5082 0.5 4.0 2.2 2.2 5133 chrX 11184227 intergenic not near genes chrX 11186794 intergenic not near genes chrX 11189360 intergenic not near genes chrX_7_11185001 chrX_11185001 RAL-405 2703 chrX 11259909 11259932 chrX 11260032 11260039 5 123 4.0 3.0 3.5 1.1 130 chrX 11259909 intron CG44422 - chrX 11259974 intron CG44422 - chrX 11260039 intron CG44422 - chrX_5_11255001 chrX_11255001 RAL-405 2704 chrX 11312041 11312084 chrX 11319413 11319457 Stalker2 6 7362 2.0 0.5 1.2 2.7 7416 chrX 11312041 intergenic not near genes chrX 11315749 intergenic not near genes chrX 11319457 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-405 2705 chrX 11379761 11379783 chrX 11379916 11379943 6 157 11.5 7.0 9.2 0.6 182 chrX 11379761 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379943 intron dlg1 + chrX_6_11375001 chrX_11375001 RAL-405 2706 chrX 11409493 11409541 chrX 11409599 11409626 7 99 5.5 2.5 4.0 1.4 133 chrX 11409493 3` UTR dlg1 + chrX 11409560 3` UTR dlg1 + chrX 11409626 3` UTR dlg1 + chrX_7_11405001 chrX_11405001 RAL-405 2707 chrX 11441986 11442018 chrX 11442083 11442110 5 96 0.5 3.0 1.8 1.8 124 chrX 11441986 intron Evi5 - chrX 11442048 intron Evi5 - chrX 11442110 intron Evi5 - chrX_5_11440001 chrX_11440001 RAL-405 2708 chrX 11548345 11548374 chrX 11548494 11548523 8 153 29.5 26.5 28.0 0.3 178 chrX 11548345 intron Drak + chrX 11548434 intron Drak + chrX 11548523 intron Drak + chrX_8_11545001 chrX_11545001 RAL-405 2709 chrX 11548342 11548378 chrX 11548532 11548534 4 168 30.0 18.5 24.2 0.2 192 chrX 11548342 intron Drak + chrX 11548438 intron Drak + chrX 11548534 intron Drak + chrX_4_11545001 chrX_11545001 RAL-405 2710 chrX 11633412 11633450 chrX 11640476 11640494 297 13 7069 1.5 3.0 2.2 4.1 7082 chrX 11633412 intron Ptp10D + chrX 11636953 intron Ptp10D + chrX 11640494 intron Ptp10D + chrX_13_11635001 chrX_11635001 RAL-405 2711 chrX 11645093 11645120 chrX 11648281 11648291 NOF 5 3185 3.5 6.5 5.0 0.8 3198 chrX 11645093 intron Ptp10D + chrX 11646692 intron Ptp10D + chrX 11648291 intron Ptp10D + chrX_5_11645001 chrX_11645001 RAL-405 2712 chrX 11804661 11804687 chrX 11804785 11804786 7 119 6.0 1.5 3.8 1.5 125 chrX 11804661 intron Hsc70-3 - chrX 11804724 intron Hsc70-3 - chrX 11804786 intron Hsc70-3 - chrX_7_11800001 chrX_11800001 RAL-405 2713 chrX 11880916 11880936 chrX 11881018 11881037 4 102 7.0 5.0 6.0 0.6 121 chrX 11880916 exon CG10353 - chrX 11880976 intron CG10353 - chrX 11881037 intron CG10353 - chrX_4_11880001 chrX_11880001 RAL-405 2714 chrX 11880941 11880956 chrX 11881008 11881058 9 90 2.0 4.0 3.0 2.2 117 chrX 11880941 intron CG10353 - chrX 11881000 intron CG10353 - chrX 11881058 intron CG10353 - chrX_9_11880001 chrX_11880001 RAL-405 2715 chrX 12094020 12094064 chrX 12094127 12094161 7 96 1.5 2.5 2.0 2.3 141 chrX 12094020 intron,intron CR43960 +,Ten-a + chrX 12094090 intron,intron CR43960 +,Ten-a + chrX 12094161 intron,intron CR43960 +,Ten-a + chrX_7_12090001 chrX_12090001 RAL-405 2716 chrX 12176719 12176759 chrX 12176815 12176827 8 89 1.0 4.5 2.8 2.1 108 chrX 12176719 intron,3` UTR Ten-a +,CG1924 - chrX 12176773 intron,3` UTR Ten-a +,CG1924 - chrX 12176827 intron,3` UTR Ten-a +,CG1924 - chrX_8_12175001 chrX_12175001 RAL-405 2717 chrX 12202751 12202802 chrX 12202855 12202901 13 99 2.5 4.0 3.2 3.1 150 chrX 12202751 intron Ten-a + chrX 12202826 intron Ten-a + chrX 12202901 intron Ten-a + chrX_13_12200001 chrX_12200001 RAL-405 2718 chrX 12246950 12246987 chrX 12247062 12247099 4 111 3.0 5.5 4.2 0.8 149 chrX 12246950 intron Ten-a + chrX 12247024 intron Ten-a + chrX 12247099 intron Ten-a + chrX_4_12245001 chrX_12245001 RAL-405 2719 chrX 12248738 12248776 chrX 12248840 12248888 8 109 1.5 4.0 2.8 2.1 150 chrX 12248738 intron Ten-a + chrX 12248813 intron Ten-a + chrX 12248888 intron Ten-a + chrX_8_12245001 chrX_12245001 RAL-405 2720 chrX 12272825 12272857 chrX 12272924 12272951 5 96 3.5 3.5 3.5 1.1 126 chrX 12272825 intron Ten-a + chrX 12272888 intron Ten-a + chrX 12272951 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-405 2721 chrX 12350775 12350806 chrX 12350866 12350882 5 85 1.0 0.5 0.8 2.8 107 chrX 12350775 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350882 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-405 2722 chrX 12356862 12356875 chrX 12356966 12357007 7 122 0.0 4.5 2.2 2.2 145 chrX 12356862 intergenic not near genes chrX 12356934 intergenic not near genes chrX 12357007 intergenic not near genes chrX_7_12355001 chrX_12355001 RAL-405 2723 chrX 12381848 12381901 chrX 12385781 12385823 flea 5 3925 0.0 3.5 1.8 1.8 3975 chrX 12381848 intergenic not near genes chrX 12383836 intergenic not near genes chrX 12385823 intergenic not near genes chrX_5_12380001 chrX_12380001 RAL-405 2724 chrX 12535964 12536000 chrX 12536061 12536079 4 95 0.0 4.5 2.2 1.2 115 chrX 12535964 intron CG43921 - chrX 12536022 intron CG43921 - chrX 12536079 intron CG43921 - chrX_4_12535001 chrX_12535001 RAL-405 2725 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 4 2701135 10.0 17.5 13.8 0.3 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_4_11195001 chrX_11195001 RAL-405 2726 chrX 12752266 12752310 chrX 12752368 12752417 13 101 4.5 3.5 4.0 2.6 151 chrX 12752266 5` UTR CR44619 + chrX 12752342 5` UTR CR44619 + chrX 12752417 intron CR44619 + chrX_13_12750001 chrX_12750001 RAL-405 2727 chrX 12823184 12823224 chrX 12823271 12823321 8 92 5.0 2.0 3.5 1.8 137 chrX 12823184 intron Pde9 - chrX 12823252 intron Pde9 - chrX 12823321 intron Pde9 - chrX_8_12820001 chrX_12820001 RAL-405 2728 chrX 12930577 12930608 chrX 12937713 12937719 HMS-Beagle 6 7130 6.0 10.0 8.0 0.7 7142 chrX 12930577 intron fne + chrX 12934148 intron fne + chrX 12937719 intron fne + chrX_6_12930001 chrX_12930001 RAL-405 2729 chrX 12953900 12953927 chrX 12954058 12954086 4 157 1.0 7.5 4.2 0.8 186 chrX 12953900 intron hec - chrX 12953993 intron hec - chrX 12954086 intron hec - chrX_4_12950001 chrX_12950001 RAL-405 2730 chrX 12971692 12971695 chrX 12971773 12971792 4 90 4.0 2.5 3.2 1.0 100 chrX 12971692 intron,exon CR43636 -,CG15721 + chrX 12971742 intron,exon CR43636 -,CG15721 + chrX 12971792 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-405 2731 chrX 12987872 12987919 chrX 12987979 12988006 19 105 2.5 6.5 4.5 3.5 134 chrX 12987872 intergenic not near genes chrX 12987939 intergenic not near genes chrX 12988006 intergenic not near genes chrX_19_12985001 chrX_12985001 RAL-405 2732 chrX 13061348 13061366 chrX 13061464 13061478 6 123 2.0 1.0 1.5 2.4 130 chrX 13061348 intron rad + chrX 13061413 intron rad + chrX 13061478 intron rad + chrX_6_13060001 chrX_13060001 RAL-405 2733 chrX 13172333 13172383 chrX 13172428 13172442 6 88 2.5 3.0 2.8 1.6 109 chrX 13172333 exon CG34411 - chrX 13172388 intron CG34411 - chrX 13172442 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-405 2734 chrX 13401489 13401512 chrX 13401841 13401884 jockey 14 366 3.0 3.5 3.2 3.3 395 chrX 13401489 intergenic CG1673 +,CG12725 - chrX 13401686 intergenic CG12725 -,CG1673 + chrX 13401884 3` UTR CG12725 - chrX_14_13400001 chrX_13400001 RAL-405 2735 chrX 13429469 13429491 chrX 13430638 13430660 jockey 7 1168 0.0 7.5 3.8 1.5 1191 chrX 13429469 intergenic not near genes chrX 13430064 intergenic not near genes chrX 13430660 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-405 2736 chrX 13463626 13463677 chrX 13469223 13469274 mdg3 10 5592 4.0 5.5 4.8 1.7 5648 chrX 13463626 intron Neto + chrX 13466450 intron Neto + chrX 13469274 intron Neto + chrX_10_13465001 chrX_13465001 RAL-405 2737 chrX 13593200 13593220 chrX 13593300 13593320 8 98 4.5 0.0 2.2 2.5 120 chrX 13593200 3` UTR Tango13 + chrX 13593260 intergenic Tango13 +,up - chrX 13593320 intergenic Tango13 +,up - chrX_8_13590001 chrX_13590001 RAL-405 2738 chrX 13645815 13645830 chrX 13645906 13645921 11 91 12.5 7.0 9.8 1.0 106 chrX 13645815 intron NFAT + chrX 13645868 intron NFAT + chrX 13645921 intron NFAT + chrX_11_13645001 chrX_13645001 RAL-405 2739 chrX 13645837 13645856 chrX 13645903 13645936 10 88 5.0 6.5 5.8 1.5 99 chrX 13645837 intron NFAT + chrX 13645886 intron NFAT + chrX 13645936 intron NFAT + chrX_10_13645001 chrX_13645001 RAL-405 2740 chrX 13889123 13889173 chrX 13889292 13889340 11 163 1.5 5.5 3.5 2.4 217 chrX 13889123 intron mamo - chrX 13889232 intron mamo - chrX 13889340 intron mamo - chrX_11_13885001 chrX_13885001 RAL-405 2741 chrX 13894650 13894704 chrX 13894746 13894800 8 93 1.5 0.0 0.8 4.4 150 chrX 13894650 intron mamo - chrX 13894725 intron mamo - chrX 13894800 intron mamo - chrX_8_13890001 chrX_13890001 RAL-405 2742 chrX 13934289 13934322 chrX 13934382 13934400 14 97 1.5 5.5 3.5 3.1 111 chrX 13934289 intron mamo - chrX 13934344 intron mamo - chrX 13934400 intron mamo - chrX_14_13930001 chrX_13930001 RAL-405 2743 chrX 13937970 13938009 chrX 13941246 13941262 I-element 16 3284 3.0 1.0 2.0 5.3 3292 chrX 13937970 intron mamo - chrX 13939616 intron mamo - chrX 13941262 intron mamo - chrX_16_13935001 chrX_13935001 RAL-405 2744 chrX 13943273 13943300 chrX 13943379 13943410 9 110 0.5 2.0 1.2 4.1 137 chrX 13943273 intron mamo - chrX 13943342 intron mamo - chrX 13943410 intron mamo - chrX_9_13940001 chrX_13940001 RAL-405 2745 chrX 13057299 13057304 chrX 13966949 13966949 4 909646 21.5 6.5 14.0 0.3 909650 chrX 13057299 intron rad + chrX 13512124 intron Neto + chrX 13966949 intron mamo - chrX_4_13510001 chrX_13510001 RAL-405 2746 chrX 13975888 13975895 chrX 13975960 13975992 4 88 0.0 3.0 1.5 1.6 104 chrX 13975888 intron mamo - chrX 13975940 intron mamo - chrX 13975992 intron mamo - chrX_4_13975001 chrX_13975001 RAL-405 2747 chrX 14105024 14105033 chrX 14114184 14114199 roo 4 9164 3.5 2.0 2.8 1.1 9175 chrX 14105024 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114199 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-405 2748 chrX 14209445 14209489 chrX 14209556 14209600 9 109 4.5 4.5 4.5 1.6 155 chrX 14209445 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209600 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-405 2749 chrX 14401545 14401568 chrX 14401664 14401686 6 125 1.5 0.5 1.0 3.0 141 chrX 14401545 intron dpr8 + chrX 14401616 intron dpr8 + chrX 14401686 intron dpr8 + chrX_6_14400001 chrX_14400001 RAL-405 2750 chrX 14407253 14407299 chrX 14407355 14407401 6 102 0.5 5.5 3.0 1.5 148 chrX 14407253 intron dpr8 + chrX 14407327 intron dpr8 + chrX 14407401 intron dpr8 + chrX_6_14405001 chrX_14405001 RAL-405 2751 chrX 14411263 14411287 chrX 14411349 14411384 11 91 3.5 2.0 2.8 2.9 121 chrX 14411263 intron dpr8 + chrX 14411324 intron dpr8 + chrX 14411384 intron dpr8 + chrX_11_14410001 chrX_14410001 RAL-405 2752 chrX 14416295 14416337 chrX 14421082 14421104 F-element 6 4774 5.0 6.0 5.5 0.9 4809 chrX 14416295 intron dpr8 + chrX 14418700 intron dpr8 + chrX 14421104 intron dpr8 + chrX_6_14415001 chrX_14415001 RAL-405 2753 chrX 14484950 14484995 chrX 14485059 14485099 6 108 0.0 6.0 3.0 1.5 149 chrX 14484950 intergenic not near genes chrX 14485024 intergenic not near genes chrX 14485099 intergenic not near genes chrX_6_14485001 chrX_14485001 RAL-405 2754 chrX 14508022 14508065 chrX 14508136 14508149 15 108 2.0 0.5 1.2 6.8 127 chrX 14508022 intergenic not near genes chrX 14508086 intergenic not near genes chrX 14508149 intergenic not near genes chrX_15_14505001 chrX_14505001 RAL-405 2755 chrX 14530532 14530554 chrX 14530631 14530663 11 104 4.0 0.0 2.0 3.7 131 chrX 14530532 intergenic not near genes chrX 14530598 intergenic not near genes chrX 14530663 intergenic not near genes chrX_11_14530001 chrX_14530001 RAL-405 2756 chrX 14570053 14570106 chrX 14570155 14570208 7 92 5.0 2.0 3.5 1.6 155 chrX 14570053 intergenic not near genes chrX 14570130 intergenic not near genes chrX 14570208 intergenic not near genes chrX_7_14570001 chrX_14570001 RAL-405 2757 chrX 14597714 14597739 chrX 14597811 14597820 4 93 9.0 5.0 7.0 0.5 106 chrX 14597714 intron CG9413 - chrX 14597767 intron CG9413 - chrX 14597820 intron CG9413 - chrX_4_14595001 chrX_14595001 RAL-405 2758 chrX 14636463 14636492 chrX 14641903 14641938 I-element 6 5447 3.5 2.0 2.8 1.6 5475 chrX 14636463 intron NetA - chrX 14639200 intron NetA - chrX 14641938 intron NetA - chrX_6_14635001 chrX_14635001 RAL-405 2759 chrX 14774962 14774983 chrX 14775059 14775080 6 96 8.0 2.5 5.2 1.0 118 chrX 14774962 intergenic CG5334 + chrX 14775021 intergenic CG5334 + chrX 14775080 intergenic CG5334 + chrX_6_14775001 chrX_14775001 RAL-405 2760 chrX 14778016 14778053 chrX 14782833 14782870 Doc 12 4814 7.0 12.0 9.5 1.1 4854 chrX 14778016 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782870 intergenic Ag5r2 - chrX_12_14780001 chrX_14780001 RAL-405 2761 chrX 14776526 14776534 chrX 14783371 14783374 Doc 5 6842 14.5 18.0 16.2 0.3 6848 chrX 14776526 intergenic CG5347 +,CG5334 + chrX 14779950 intergenic not near genes chrX 14783374 intron Ag5r2 - chrX_5_14775001 chrX_14775001 RAL-405 2762 chrX 14825358 14825374 chrX 14825455 14825466 4 92 1.5 3.5 2.5 1.1 108 chrX 14825358 intron rut - chrX 14825412 intron rut - chrX 14825466 intron rut - chrX_4_14825001 chrX_14825001 RAL-405 2763 chrX 14936843 14936890 chrX 14946115 14946157 roo 18 9271 3.0 4.0 3.5 4.0 9314 chrX 14936843 intron pdgy - chrX 14941500 intron pdgy - chrX 14946157 intron pdgy - chrX_18_14940001 chrX_14940001 RAL-405 2764 chrX 14968054 14968097 chrX 14968153 14968171 11 93 1.0 3.5 2.2 3.4 117 chrX 14968054 intron eag + chrX 14968112 intron eag + chrX 14968171 intron eag + chrX_11_14965001 chrX_14965001 RAL-405 2765 chrX 14985490 14985531 chrX 14985595 14985636 6 99 1.0 7.5 4.2 1.2 146 chrX 14985490 intron eag + chrX 14985563 intron eag + chrX 14985636 intron eag + chrX_6_14985001 chrX_14985001 RAL-405 2766 chrX 15110607 15110616 chrX 15110705 15110715 4 98 7.0 9.0 8.0 0.4 108 chrX 15110607 exon Rab3-GEF + chrX 15110661 3` UTR Rab3-GEF + chrX 15110715 intron Rab3-GEF + chrX_4_15110001 chrX_15110001 RAL-405 2767 chrX 15110623 15110645 chrX 15110693 15110745 14 90 4.0 3.5 3.8 2.9 122 chrX 15110623 exon Rab3-GEF + chrX 15110684 intron Rab3-GEF + chrX 15110745 intron Rab3-GEF + chrX_14_15110001 chrX_15110001 RAL-405 2768 chrX 15200630 15200640 chrX 15200726 15200726 5 94 6.5 3.0 4.8 0.9 96 chrX 15200630 intergenic not near genes chrX 15200678 intergenic not near genes chrX 15200726 intergenic not near genes chrX_5_15200001 chrX_15200001 RAL-405 2769 chrX 15228479 15228514 chrX 15228745 15228780 11 262 3.5 5.5 4.5 2.0 301 chrX 15228479 intergenic CG9101 - chrX 15228630 intergenic CG9101 - chrX 15228780 3` UTR CG9101 - chrX_11_15225001 chrX_15225001 RAL-405 2770 chrX 15248250 15248291 chrX 15248340 15248375 14 93 1.0 2.5 1.8 5.0 125 chrX 15248250 intergenic not near genes chrX 15248312 intergenic not near genes chrX 15248375 intergenic not near genes chrX_14_15245001 chrX_15245001 RAL-405 2771 chrX 15277619 15277657 chrX 15277724 15277762 7 102 3.0 3.5 3.2 1.7 143 chrX 15277619 intergenic not near genes chrX 15277690 intergenic not near genes chrX 15277762 intergenic not near genes chrX_7_15275001 chrX_15275001 RAL-405 2772 chrX 15287593 15287599 chrX 15287698 15287704 4 105 2.5 0.0 1.2 1.8 111 chrX 15287593 intergenic not near genes chrX 15287648 intergenic not near genes chrX 15287704 intergenic not near genes chrX_4_15285001 chrX_15285001 RAL-405 2773 chrX 15358314 15358339 chrX 15358402 15358439 12 103 5.0 4.0 4.5 2.2 125 chrX 15358314 intron acj6 - chrX 15358376 intron acj6 - chrX 15358439 intron acj6 - chrX_12_15355001 chrX_15355001 RAL-405 2774 chrX 15429226 15429255 chrX 15429309 15429358 7 98 6.0 4.0 5.0 1.2 132 chrX 15429226 intron Cngl - chrX 15429292 intron Cngl - chrX 15429358 intron Cngl - chrX_7_15425001 chrX_15425001 RAL-405 2775 chrX 15565621 15565668 chrX 15565722 15565774 11 104 3.5 3.5 3.5 2.4 153 chrX 15565621 intergenic not near genes chrX 15565698 intergenic not near genes chrX 15565774 intergenic not near genes chrX_11_15565001 chrX_15565001 RAL-405 2776 chrX 4275590 4275590 chrX 15627327 15627327 4 11351737 3.0 19.0 11.0 0.3 11351737 chrX 4275590 3` UTR CR45483 - chrX 9951458 intergenic not near genes chrX 15627327 intron sog - chrX_4_9950001 chrX_9950001 RAL-405 2777 chrX 15939251 15939300 chrX 15939356 15939405 16 102 5.0 5.0 5.0 2.7 154 chrX 15939251 intron Stim - chrX 15939328 intron Stim - chrX 15939405 intron Stim - chrX_16_15935001 chrX_15935001 RAL-405 2778 chrX 16222762 16222809 chrX 16231127 16231179 roo 15 8364 6.5 4.0 5.2 2.4 8417 chrX 16222762 intergenic not near genes chrX 16226970 intergenic not near genes chrX 16231179 intergenic not near genes chrX_15_16225001 chrX_16225001 RAL-405 2779 chrX 16260311 16260335 chrX 16260410 16260419 4 95 0.5 6.5 3.5 0.9 108 chrX 16260311 intergenic not near genes chrX 16260365 intergenic not near genes chrX 16260419 intergenic not near genes chrX_4_16260001 chrX_16260001 RAL-405 2780 chrX 16295517 16295531 chrX 16295621 16295630 4 102 8.0 0.0 4.0 0.8 113 chrX 16295517 intron CG9911 - chrX 16295574 intron CG9911 - chrX 16295630 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-405 2781 chrX 16340648 16340698 chrX 16349823 16349875 roo 5 9169 0.0 8.0 4.0 1.0 9227 chrX 16340648 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349875 intergenic sl + chrX_5_16345001 chrX_16345001 RAL-405 2782 chrX 16492625 16492675 chrX 16498222 16498272 mdg3 12 5596 6.5 5.0 5.8 1.8 5647 chrX 16492625 intron para - chrX 16495448 intron para - chrX 16498272 exon para - chrX_12_16495001 chrX_16495001 RAL-405 2783 chrX 16570855 16570901 chrX 16570950 16570985 6 87 3.5 4.5 4.0 1.2 130 chrX 16570855 intron CanA-14F - chrX 16570920 intron CanA-14F - chrX 16570985 intron CanA-14F - chrX_6_16570001 chrX_16570001 RAL-405 2784 chrX 16764717 16764732 chrX 16764814 16764829 8 97 12.5 0.0 6.2 1.1 112 chrX 16764717 intron if - chrX 16764773 intron if - chrX 16764829 intron if - chrX_8_16760001 chrX_16760001 RAL-405 2785 chrX 16821217 16821263 chrX 16821317 16821333 13 94 5.0 6.0 5.5 2.0 116 chrX 16821217 intron CG4829 + chrX 16821275 intron CG4829 + chrX 16821333 intron CG4829 + chrX_13_16820001 chrX_16820001 RAL-405 2786 chrX 16870071 16870095 chrX 16870168 16870188 4 98 1.5 3.5 2.5 1.1 117 chrX 16870071 intron CG13003 - chrX 16870130 intron CG13003 - chrX 16870188 intron CG13003 - chrX_4_16870001 chrX_16870001 RAL-405 2787 chrX 16880146 16880160 chrX 16880257 16880271 7 110 5.5 12.5 9.0 0.7 125 chrX 16880146 intergenic not near genes chrX 16880208 intergenic not near genes chrX 16880271 intergenic not near genes chrX_7_16880001 chrX_16880001 RAL-405 2788 chrX 17011968 17011997 chrX 17012050 17012074 5 89 2.5 1.5 2.0 1.7 106 chrX 17011968 intron CG45002 - chrX 17012021 intron CG45002 - chrX 17012074 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-405 2789 chrX 17057930 17057961 chrX 17058175 17058222 pogo 6 248 2.5 3.5 3.0 1.5 292 chrX 17057930 intron CG45002 - chrX 17058076 intron CG45002 - chrX 17058222 intron CG45002 - chrX_6_17055001 chrX_17055001 RAL-405 2790 chrX 17061551 17061598 chrX 17061694 17061726 8 139 4.0 2.5 3.2 1.9 175 chrX 17061551 intron CG45002 - chrX 17061638 intron CG45002 - chrX 17061726 intron CG45002 - chrX_8_17060001 chrX_17060001 RAL-405 2791 chrX 17110310 17110337 chrX 17110432 17110479 4 136 0.0 1.0 0.5 2.7 169 chrX 17110310 intron CG5004 + chrX 17110394 intron CG5004 + chrX 17110479 intron CG5004 + chrX_4_17110001 chrX_17110001 RAL-405 2792 chrX 17179574 17179611 chrX 17179685 17179728 6 114 5.0 5.5 5.2 1.0 154 chrX 17179574 intron baz + chrX 17179651 intron baz + chrX 17179728 intron baz + chrX_6_17175001 chrX_17175001 RAL-405 2793 chrX 17205833 17205855 chrX 17205943 17205965 11 110 5.5 5.5 5.5 1.7 132 chrX 17205833 intergenic not near genes chrX 17205899 intergenic not near genes chrX 17205965 intergenic CG32564 + chrX_11_17205001 chrX_17205001 RAL-405 2794 chrX 17211454 17211483 chrX 17212137 17212167 INE-1 5 685 20.5 14.0 17.2 0.3 713 chrX 17211454 intergenic not near genes chrX 17211810 intergenic CG18258 + chrX 17212167 intergenic CG18258 + chrX_5_17210001 chrX_17210001 RAL-405 2795 chrX 17290058 17290092 chrX 17290143 17290188 16 91 5.5 5.0 5.2 2.6 130 chrX 17290058 intron,intron CG5445 +,Fim - chrX 17290123 intron,intron CG5445 +,Fim - chrX 17290188 intron,intron CG5445 +,Fim - chrX_16_17290001 chrX_17290001 RAL-405 2796 chrX 17316354 17316390 chrX 17316451 17316490 18 99 6.5 0.0 3.2 4.3 136 chrX 17316354 intron B-H2 + chrX 17316422 intron B-H2 + chrX 17316490 intron B-H2 + chrX_18_17315001 chrX_17315001 RAL-405 2797 chrX 17335684 17335727 chrX 17335796 17335813 5 104 2.5 5.0 3.8 1.0 129 chrX 17335684 intergenic not near genes chrX 17335748 intergenic not near genes chrX 17335813 intergenic not near genes chrX_5_17335001 chrX_17335001 RAL-405 2798 chrX 17352593 17352619 chrX 17352691 17352727 11 116 0.0 5.0 2.5 3.1 134 chrX 17352593 intergenic not near genes chrX 17352660 intergenic not near genes chrX 17352727 intergenic not near genes chrX_11_17350001 chrX_17350001 RAL-405 2799 chrX 17389640 17389663 chrX 17389733 17389772 6 98 5.5 2.0 3.8 1.2 132 chrX 17389640 intergenic not near genes chrX 17389706 intergenic not near genes chrX 17389772 intergenic not near genes chrX_6_17385001 chrX_17385001 RAL-405 2800 chrX 17502336 17502372 chrX 17502436 17502467 7 98 7.5 4.5 6.0 1.0 131 chrX 17502336 intron CG43658 - chrX 17502402 intron CG43658 - chrX 17502467 intron CG43658 - chrX_7_17500001 chrX_17500001 RAL-405 2801 chrX 17545000 17545032 chrX 17545102 17545109 13 96 5.0 4.0 4.5 2.4 109 chrX 17545000 intron CG43658 - chrX 17545054 intron CG43658 - chrX 17545109 intron CG43658 - chrX_13_17545001 chrX_17545001 RAL-405 2802 chrX 17711352 17711375 chrX 17711458 17711470 9 104 11.0 2.5 6.8 1.2 118 chrX 17711352 intron CG42684 + chrX 17711411 intron CG42684 + chrX 17711470 intron CG42684 + chrX_9_17710001 chrX_17710001 RAL-405 2803 chrX 17731100 17731130 chrX 17731196 17731226 9 93 2.0 5.0 3.5 2.0 126 chrX 17731100 intron CG42684 + chrX 17731163 intron CG42684 + chrX 17731226 intron CG42684 + chrX_9_17730001 chrX_17730001 RAL-405 2804 chrX 17741317 17741360 chrX 17741483 17741521 7 160 0.0 6.0 3.0 1.8 204 chrX 17741317 intron CG42684 + chrX 17741419 intron CG42684 + chrX 17741521 intron CG42684 + chrX_7_17740001 chrX_17740001 RAL-405 2805 chrX 17939705 17939726 chrX 17939844 17939860 7 137 3.5 7.5 5.5 1.1 155 chrX 17939705 intergenic Sh - chrX 17939782 3` UTR Sh - chrX 17939860 3` UTR Sh - chrX_7_17935001 chrX_17935001 RAL-405 2806 chrX 17972759 17972776 chrX 17972872 17972889 4 113 2.0 0.0 1.0 2.0 130 chrX 17972759 intron Sh - chrX 17972824 intron Sh - chrX 17972889 intron Sh - chrX_4_17970001 chrX_17970001 RAL-405 2807 chrX 18148616 18148625 chrX 18148739 18148747 4 123 4.5 1.5 3.0 1.0 131 chrX 18148616 intergenic not near genes chrX 18148682 intergenic not near genes chrX 18148747 intergenic not near genes chrX_4_18145001 chrX_18145001 RAL-405 2808 chrX 18194057 18194101 chrX 18194612 18194656 BS 12 555 4.0 5.0 4.5 2.2 599 chrX 18194057 intron Frq2 + chrX 18194356 intron Frq2 + chrX 18194656 intron Frq2 + chrX_12_18190001 chrX_18190001 RAL-405 2809 chrX 18218042 18218067 chrX 18218153 18218204 9 129 5.5 4.5 5.0 1.5 162 chrX 18218042 intron CG33639 - chrX 18218123 intron CG33639 - chrX 18218204 intron CG33639 - chrX_9_18215001 chrX_18215001 RAL-405 2810 chrX 18429487 18429520 chrX 18434818 18434851 Transpac 14 5330 3.0 6.5 4.8 2.4 5364 chrX 18429487 intergenic not near genes chrX 18432169 intergenic not near genes chrX 18434851 intergenic not near genes chrX_14_18430001 chrX_18430001 RAL-405 2811 chrX 18469869 18469884 chrX 18469957 18469960 6 96 1.5 4.5 3.0 1.5 91 chrX 18469869 intron CG32547 - chrX 18469914 intron CG32547 - chrX 18469960 intron CG32547 - chrX_6_18465001 chrX_18465001 RAL-405 2812 chrX 18558765 18558798 chrX 18558867 18558884 7 96 1.5 3.5 2.5 2.0 119 chrX 18558765 intron Bx + chrX 18558824 intron Bx + chrX 18558884 intron Bx + chrX_7_18555001 chrX_18555001 RAL-405 2813 chrX 18576081 18576102 chrX 18576179 18576190 6 96 0.5 6.5 3.5 1.3 109 chrX 18576081 intergenic not near genes chrX 18576136 intergenic not near genes chrX 18576190 intergenic not near genes chrX_6_18575001 chrX_18575001 RAL-405 2814 chrX 18645008 18645047 chrX 18645116 18645165 5 112 4.0 3.0 3.5 1.1 157 chrX 18645008 intron Rip11 - chrX 18645086 intron Rip11 - chrX 18645165 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-405 2815 chrX 18671201 18671245 chrX 18671303 18671347 18 98 2.5 2.0 2.2 5.6 146 chrX 18671201 intergenic not near genes chrX 18671274 intergenic not near genes chrX 18671347 intergenic not near genes chrX_18_18670001 chrX_18670001 RAL-405 2816 chrX 18698829 18698873 chrX 18698966 18699010 6 132 3.5 7.5 5.5 0.9 181 chrX 18698829 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18699010 intergenic not near genes chrX_6_18695001 chrX_18695001 RAL-405 2817 chrX 18774427 18774472 chrX 18774532 18774552 9 97 4.5 2.0 3.2 2.1 125 chrX 18774427 intergenic CCKLR-17D3 - chrX 18774490 intergenic CCKLR-17D3 - chrX 18774552 intergenic not near genes chrX_9_18770001 chrX_18770001 RAL-405 2818 chrX 18888675 18888689 chrX 18888753 18888783 6 93 1.0 4.5 2.8 1.6 108 chrX 18888675 3` UTR CG7332 + chrX 18888729 3` UTR CG7332 + chrX 18888783 3` UTR CG7332 + chrX_6_18885001 chrX_18885001 RAL-405 2819 chrX 18896503 18896549 chrX 18896629 18896680 13 129 3.0 5.5 4.2 2.5 177 chrX 18896503 3` UTR CG7349 + chrX 18896592 intergenic CG7349 + chrX 18896680 intergenic CG7349 + chrX_13_18895001 chrX_18895001 RAL-405 2820 chrX 18921936 18921960 chrX 18922007 18922060 4 92 2.0 3.0 2.5 1.1 124 chrX 18921936 intergenic not near genes chrX 18921998 intergenic not near genes chrX 18922060 intergenic not near genes chrX_4_18920001 chrX_18920001 RAL-405 2821 chrX 18947495 18947533 chrX 18947608 18947636 8 109 4.0 6.5 5.2 1.3 141 chrX 18947495 intron CG43759 + chrX 18947566 intron CG43759 + chrX 18947636 intron CG43759 + chrX_8_18945001 chrX_18945001 RAL-405 2822 chrX 19048207 19048257 chrX 19048317 19048366 10 107 3.5 3.0 3.2 2.4 159 chrX 19048207 intergenic not near genes chrX 19048286 intergenic not near genes chrX 19048366 intergenic not near genes chrX_10_19045001 chrX_19045001 RAL-405 2823 chrX 19060395 19060439 chrX 19065194 19065243 Doc 13 4798 3.0 2.5 2.8 3.4 4848 chrX 19060395 intron CG14190 + chrX 19062819 intron CG14190 + chrX 19065243 intron CG14190 + chrX_13_19060001 chrX_19060001 RAL-405 2824 chrX 19073664 19073693 chrX 19073771 19073800 9 103 7.5 4.0 5.8 1.3 136 chrX 19073664 intergenic not near genes chrX 19073732 intergenic not near genes chrX 19073800 intergenic not near genes chrX_9_19070001 chrX_19070001 RAL-405 2825 chrX 19097671 19097717 chrX 19097877 19097893 12 200 4.0 3.5 3.8 2.5 222 chrX 19097671 intergenic not near genes chrX 19097782 intergenic not near genes chrX 19097893 intergenic not near genes chrX_12_19095001 chrX_19095001 RAL-405 2826 chrX 19098762 19098782 chrX 19098850 19098880 5 96 5.0 6.5 5.8 0.7 118 chrX 19098762 intergenic not near genes chrX 19098821 intergenic not near genes chrX 19098880 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-405 2827 chrX 19101192 19101207 chrX 19101327 19101342 5 133 0.0 0.0 0.0 5.0 150 chrX 19101192 intergenic not near genes chrX 19101267 intergenic not near genes chrX 19101342 intergenic not near genes chrX_5_19100001 chrX_19100001 RAL-405 2828 chrX 19109114 19109135 chrX 19109293 19109334 8 190 0.5 1.0 0.8 4.4 220 chrX 19109114 intergenic not near genes chrX 19109224 intergenic not near genes chrX 19109334 intergenic not near genes chrX_8_19105001 chrX_19105001 RAL-405 2829 chrX 19119679 19119703 chrX 19119785 19119809 9 105 6.0 0.0 3.0 2.2 130 chrX 19119679 intergenic not near genes chrX 19119744 intergenic not near genes chrX 19119809 intergenic not near genes chrX_9_19115001 chrX_19115001 RAL-405 2830 chrX 19127195 19127231 chrX 19127290 19127299 5 88 1.0 0.0 0.5 3.3 104 chrX 19127195 exon tgy - chrX 19127247 exon tgy - chrX 19127299 exon tgy - chrX_5_19125001 chrX_19125001 RAL-405 2831 chrX 19281000 19281019 chrX 19281149 19281168 6 149 0.5 4.0 2.2 1.9 168 chrX 19281000 intergenic CG8034 - chrX 19281084 intergenic CG8034 - chrX 19281168 intergenic CG8034 - chrX_6_19280001 chrX_19280001 RAL-405 2832 chrX 19356971 19357009 chrX 19358432 19358470 NOF 8 1458 4.5 8.0 6.2 1.1 1499 chrX 19356971 intron kek5 + chrX 19357720 intron kek5 + chrX 19358470 intron kek5 + chrX_8_19355001 chrX_19355001 RAL-405 2833 chrX 19380150 19380158 chrX 19380403 19380419 pogo 7 259 5.5 2.5 4.0 1.4 269 chrX 19380150 intron kek5 + chrX 19380284 intron kek5 + chrX 19380419 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-405 2834 chrX 19380160 19380186 chrX 19380402 19380447 pogo 10 258 3.0 2.5 2.8 2.6 287 chrX 19380160 intron kek5 + chrX 19380304 intron kek5 + chrX 19380447 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-405 2835 chrX 19472146 19472157 chrX 19472701 19472721 jockey 4 560 0.5 4.0 2.2 1.2 575 chrX 19472146 intergenic kek5 + chrX 19472434 intergenic not near genes chrX 19472721 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-405 2836 chrX 19500727 19500746 chrX 19500803 19500853 9 102 2.0 2.5 2.2 2.8 126 chrX 19500727 intron,intron CG14200 +,Pfrx + chrX 19500790 intron,intron CG14200 +,Pfrx + chrX 19500853 intron,intron CG14200 +,Pfrx + chrX_9_19500001 chrX_19500001 RAL-405 2837 chrX 19541411 19541447 chrX 19541511 19541532 7 97 5.0 8.0 6.5 0.9 121 chrX 19541411 intron CG32532 - chrX 19541472 intron CG32532 - chrX 19541532 intron CG32532 - chrX_7_19540001 chrX_19540001 RAL-405 2838 chrX 19710067 19710104 chrX 19711857 19711910 S-element 5 1797 2.0 6.0 4.0 1.0 1843 chrX 19710067 intron meso18E - chrX 19710988 intron meso18E - chrX 19711910 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-405 2839 chrX 19762567 19762616 chrX 19762667 19762691 14 95 3.0 1.5 2.2 4.4 124 chrX 19762567 5` UTR CG12702 - chrX 19762629 5` UTR CG12702 - chrX 19762691 5` UTR CG12702 - chrX_14_19760001 chrX_19760001 RAL-405 2840 chrX 19787265 19787271 chrX 19787355 19787357 5 93 8.5 0.0 4.2 1.0 92 chrX 19787265 3` UTR CR44885 - chrX 19787311 intron CR44885 - chrX 19787357 intron CR44885 - chrX_5_19785001 chrX_19785001 RAL-405 2841 chrX 19817450 19817497 chrX 19817567 19817614 18 115 3.5 3.0 3.2 4.3 164 chrX 19817450 intergenic not near genes chrX 19817532 intergenic not near genes chrX 19817614 intergenic not near genes chrX_18_19815001 chrX_19815001 RAL-405 2842 chrX 19838487 19838501 chrX 19838585 19838593 4 96 10.5 1.0 5.8 0.6 106 chrX 19838487 intron pico - chrX 19838540 intron pico - chrX 19838593 intron pico - chrX_4_19835001 chrX_19835001 RAL-405 2843 chrX 19897368 19897404 chrX 19897465 19897501 14 96 7.0 4.5 5.8 2.1 133 chrX 19897368 intron Hers + chrX 19897434 intron Hers + chrX 19897501 intron Hers + chrX_14_19895001 chrX_19895001 RAL-405 2844 chrX 19897409 19897416 chrX 19897461 19897465 4 65 7.0 3.5 5.2 0.6 56 chrX 19897409 intron Hers + chrX 19897437 intron Hers + chrX 19897465 intron Hers + chrX_4_19895001 chrX_19895001 RAL-405 2845 chrX 19983865 19983900 chrX 19983946 19983985 4 85 1.0 2.5 1.8 1.4 120 chrX 19983865 intergenic not near genes chrX 19983925 intergenic not near genes chrX 19983985 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-405 2846 chrX 20052783 20052815 chrX 20052870 20052899 6 90 1.0 0.0 0.5 4.0 116 chrX 20052783 intron Dop2R - chrX 20052841 intron Dop2R - chrX 20052899 intron Dop2R - chrX_6_20050001 chrX_20050001 RAL-405 2847 chrX 20279731 20279777 chrX 20279832 20279878 16 100 5.5 6.5 6.0 2.3 147 chrX 20279731 intergenic not near genes chrX 20279804 intergenic not near genes chrX 20279878 intergenic not near genes chrX_16_20275001 chrX_20275001 RAL-405 2848 chrX 20312865 20312908 chrX 20312963 20312986 15 91 2.0 5.5 3.8 3.1 121 chrX 20312865 intron CG1504 - chrX 20312926 intron CG1504 - chrX 20312986 intron CG1504 - chrX_15_20310001 chrX_20310001 RAL-405 2849 chrX 20320287 20320298 chrX 20320384 20320395 4 95 4.5 3.5 4.0 0.8 108 chrX 20320287 intron CG1504 - chrX 20320341 intron CG1504 - chrX 20320395 intron CG1504 - chrX_4_20320001 chrX_20320001 RAL-405 2850 chrX 20359127 20359170 chrX 20359220 20359260 5 90 4.5 3.0 3.8 1.0 133 chrX 20359127 intergenic not near genes chrX 20359194 intergenic not near genes chrX 20359260 intergenic not near genes chrX_5_20355001 chrX_20355001 RAL-405 2851 chrX 20369300 20369342 chrX 20369404 20369436 11 102 0.5 4.0 2.2 3.4 136 chrX 20369300 intergenic not near genes chrX 20369368 intergenic not near genes chrX 20369436 intergenic not near genes chrX_11_20365001 chrX_20365001 RAL-405 2852 chrX 20374077 20374124 chrX 20374173 20374220 9 93 0.5 4.5 2.5 2.6 143 chrX 20374077 intergenic not near genes chrX 20374148 intergenic not near genes chrX 20374220 intergenic not near genes chrX_9_20370001 chrX_20370001 RAL-405 2853 chrX 20493914 20493923 chrX 20494075 20494104 5 176 0.0 9.5 4.8 0.9 190 chrX 20493914 intron RhoGAP19D - chrX 20494009 intron RhoGAP19D - chrX 20494104 intron RhoGAP19D - chrX_5_20490001 chrX_20490001 RAL-405 2854 chrX 20504108 20504154 chrX 20505649 20505684 transib2 6 1538 4.5 1.0 2.8 1.6 1576 chrX 20504108 intron RhoGAP19D - chrX 20504896 intron RhoGAP19D - chrX 20505684 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-405 2855 chrX 20528581 20528630 chrX 20528949 20528998 16 365 3.0 4.5 3.8 3.3 417 chrX 20528581 intergenic not near genes chrX 20528790 intergenic not near genes chrX 20528998 intergenic not near genes chrX_16_20525001 chrX_20525001 RAL-405 2856 chrX 20531742 20531779 chrX 20531861 20531898 13 119 2.5 5.0 3.8 2.7 156 chrX 20531742 intergenic not near genes chrX 20531820 intergenic not near genes chrX 20531898 intergenic not near genes chrX_13_20530001 chrX_20530001 RAL-405 2857 chrX 20559019 20559048 chrX 20559116 20559145 7 96 0.5 4.5 2.5 2.0 126 chrX 20559019 intron RunxB + chrX 20559082 intron RunxB + chrX 20559145 intron RunxB + chrX_7_20555001 chrX_20555001 RAL-405 2858 chrX 20575136 20575187 chrX 20575234 20575285 15 91 5.0 2.5 3.8 3.1 149 chrX 20575136 intergenic CG42580 + chrX 20575210 intergenic not near genes chrX 20575285 intergenic not near genes chrX_15_20575001 chrX_20575001 RAL-405 2859 chrX 20662299 20662342 chrX 20662402 20662441 5 87 5.5 0.0 2.8 1.3 142 chrX 20662299 intron CG1835 + chrX 20662370 intron CG1835 + chrX 20662441 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-405 2860 chrX 20719190 20719198 chrX 20719532 20719551 7 348 2.5 4.5 3.5 1.6 361 chrX 20719190 intergenic not near genes chrX 20719370 intergenic not near genes chrX 20719551 intergenic not near genes chrX_7_20715001 chrX_20715001 RAL-405 2861 chrX 20780207 20780236 chrX 20780452 20780476 6 238 1.0 5.0 3.0 1.5 269 chrX 20780207 intron,3` UTR shakB -,CG32507 - chrX 20780342 intron,3` UTR shakB -,CG32507 - chrX 20780476 intron,3` UTR shakB -,CG32507 - chrX_6_20780001 chrX_20780001 RAL-405 2862 chrX 20791538 20791587 chrX 20791658 20791662 6 107 5.5 1.0 3.2 1.4 124 chrX 20791538 intron shakB - chrX 20791600 intron shakB - chrX 20791662 intron shakB - chrX_6_20790001 chrX_20790001 RAL-405 2863 chrX 20836717 20836753 chrX 20844339 20844349 roo 9 7619 4.0 5.5 4.8 1.6 7632 chrX 20836717 intron shakB - chrX 20840533 intron shakB - chrX 20844349 intron shakB - chrX_9_20840001 chrX_20840001 RAL-405 2864 chrX 20956973 20957006 chrX 20962435 20962468 I-element 10 5460 6.5 5.5 6.0 1.4 5495 chrX 20956973 intergenic not near genes chrX 20959720 intergenic not near genes chrX 20962468 intergenic Ser6 - chrX_10_20955001 chrX_20955001 RAL-405 2865 chrX 21028681 21028731 chrX 21028887 21028937 12 204 4.5 2.5 3.5 2.7 256 chrX 21028681 3` UTR CG1529 - chrX 21028809 3` UTR CG1529 - chrX 21028937 3` UTR CG1529 - chrX_12_21025001 chrX_21025001 RAL-405 2866 chrX 21061857 21061890 chrX 21062351 21062385 roo 9 498 3.0 3.0 3.0 2.2 528 chrX 21061857 intron bves + chrX 21062121 intron bves + chrX 21062385 intron,3` UTR bves +,CG32512 - chrX_9_21060001 chrX_21060001 RAL-405 2867 chrX 21076307 21076357 chrX 21076406 21076456 17 97 7.0 0.0 3.5 3.8 149 chrX 21076307 intron bves + chrX 21076382 intron bves + chrX 21076456 intron bves + chrX_17_21075001 chrX_21075001 RAL-405 2868 chrX 21077590 21077611 chrX 21077690 21077709 4 100 7.0 4.0 5.5 0.6 119 chrX 21077590 intron bves + chrX 21077650 intron bves + chrX 21077709 intron bves + chrX_4_21075001 chrX_21075001 RAL-405 2869 chrX 21086117 21086159 chrX 21087166 21087208 jockey 10 1044 5.5 8.0 6.8 1.3 1091 chrX 21086117 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087208 intergenic not near genes chrX_10_21085001 chrX_21085001 RAL-405 2870 chrX 21088021 21088075 chrX 21088173 21088191 7 137 2.0 1.5 1.8 2.5 170 chrX 21088021 intergenic not near genes chrX 21088106 intergenic not near genes chrX 21088191 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-405 2871 chrX 21166120 21166167 chrX 21166218 21166268 9 98 2.0 2.5 2.2 2.8 148 chrX 21166120 intergenic not near genes chrX 21166194 intergenic not near genes chrX 21166268 intergenic not near genes chrX_9_21165001 chrX_21165001 RAL-405 2872 chrX 21185975 21186014 chrX 21186082 21186100 7 103 1.5 6.0 3.8 1.5 125 chrX 21185975 intergenic not near genes chrX 21186038 intergenic not near genes chrX 21186100 intergenic not near genes chrX_7_21185001 chrX_21185001 RAL-405 2873 chrX 21275148 21275192 chrX 21275241 21275269 13 94 3.5 4.5 4.0 2.6 121 chrX 21275148 intron CG32521 - chrX 21275208 intron CG32521 - chrX 21275269 intron CG32521 - chrX_13_21275001 chrX_21275001 RAL-405 2874 chrX 21328098 21328143 chrX 21328229 21328274 15 125 7.0 6.0 6.5 2.0 176 chrX 21328098 3` UTR CG1486 + chrX 21328186 intergenic CG1486 +,tty - chrX 21328274 intergenic CG1486 +,tty - chrX_15_21325001 chrX_21325001 RAL-405 2875 chrX 21388356 21388406 chrX 21388533 21388577 9 171 5.0 3.5 4.2 1.7 221 chrX 21388356 intergenic Hlc - chrX 21388466 intergenic not near genes chrX 21388577 intergenic mst + chrX_9_21385001 chrX_21385001 RAL-405 2876 chrX 21428322 21428365 chrX 21428525 21428539 10 193 3.5 1.5 2.5 2.9 217 chrX 21428322 intron CG42343 - chrX 21428430 intron CG42343 - chrX 21428539 intron CG42343 - chrX_10_21425001 chrX_21425001 RAL-405 2877 chrX 21455199 21455240 chrX 21455398 21455442 4 199 2.5 0.0 1.2 1.8 243 chrX 21455199 intron CG42343 - chrX 21455320 intron CG42343 - chrX 21455442 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-405 2878 chrX 21458681 21458727 chrX 21464127 21464163 Ivk 20 5448 5.5 7.5 6.5 2.7 5482 chrX 21458681 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464163 intergenic not near genes chrX_20_21460001 chrX_21460001 RAL-405 2879 chrX 21492256 21492300 chrX 21492389 21492433 5 132 5.5 4.0 4.8 0.9 177 chrX 21492256 intergenic not near genes chrX 21492344 intergenic not near genes chrX 21492433 intergenic not near genes chrX_5_21490001 chrX_21490001 RAL-405 2880 chrX 21516972 21517018 chrX 21517064 21517086 7 87 5.0 5.5 5.2 1.1 114 chrX 21516972 intron CR45082 - chrX 21517029 intron CR45082 - chrX 21517086 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-405 2881 chrX 21573885 21573897 chrX 21573978 21574004 4 104 6.5 4.5 5.5 0.6 119 chrX 21573885 intergenic not near genes chrX 21573944 intergenic not near genes chrX 21574004 intergenic not near genes chrX_4_21570001 chrX_21570001 RAL-405 2882 chrX 21581538 21581570 chrX 21581639 21581647 8 97 1.5 0.5 1.0 4.0 109 chrX 21581538 intergenic not near genes chrX 21581592 intergenic not near genes chrX 21581647 intergenic not near genes chrX_8_21580001 chrX_21580001 RAL-405 2883 chrX 21668246 21668286 chrX 21668340 21668381 12 101 1.5 3.0 2.2 3.8 135 chrX 21668246 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668381 intergenic not near genes chrX_12_21665001 chrX_21665001 RAL-405 2884 chrX 22448250 22448295 chrX 22448409 22448454 24 156 1.5 4.0 2.8 6.3 204 chrX 22448250 intron CG14615 - chrX 22448352 intron CG14615 - chrX 22448454 intron CG14615 - chrX_24_22445001 chrX_22445001 RAL-405 2885 chrX 22478876 22478897 chrX 22479024 22479050 9 152 0.0 2.0 1.0 4.5 174 chrX 22478876 intron CG12576 - chrX 22478963 intron CG12576 - chrX 22479050 intron CG12576 - chrX_9_22475001 chrX_22475001 RAL-405 2886 chrX 22522619 22522639 chrX 22525459 22525473 NOF 4 2837 11.0 1.0 6.0 0.6 2854 chrX 22522619 intron CG17600 + chrX 22524046 intron CG17600 + chrX 22525473 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-405 2887 chrX 22564558 22564585 chrX 22575123 22575137 jockey 4 10556 12.0 13.0 12.5 0.3 10579 chrX 22564558 intergenic not near genes chrX 22569848 intergenic not near genes chrX 22575137 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-405 2888 chrX 22585503 22585538 chrX 22585606 22585637 6 101 2.0 2.5 2.2 1.9 134 chrX 22585503 intron Cda4 - chrX 22585570 intron Cda4 - chrX 22585637 intron Cda4 - chrX_6_22585001 chrX_22585001 RAL-405 2889 chrX 22636771 22636818 chrX 22636876 22636923 14 103 4.5 3.0 3.8 2.9 152 chrX 22636771 intergenic not near genes chrX 22636847 intergenic not near genes chrX 22636923 intergenic not near genes chrX_14_22635001 chrX_22635001 RAL-405 2890 chrX 22677278 22677326 chrX 22677507 22677537 14 224 3.0 2.0 2.5 4.0 259 chrX 22677278 intron CR44997 + chrX 22677408 intron CR44997 + chrX 22677537 intron CR44997 + chrX_14_22675001 chrX_22675001 RAL-405 2891 chrX 22681463 22681481 chrX 22688939 22688951 HMS-Beagle2 6 7474 6.5 2.5 4.5 1.1 7488 chrX 22681463 intron CR44997 + chrX 22685207 intron CR44997 + chrX 22688951 intron CR44997 + chrX_6_22685001 chrX_22685001 RAL-405 2892 chrX 22697483 22697494 chrX 22701800 22701806 Juan 4 4314 4.5 2.5 3.5 0.9 4323 chrX 22697483 intron CR44997 + chrX 22699644 intron CR44997 + chrX 22701806 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-405 2893 chrX 22697497 22697513 chrX 22701798 22701830 Juan 6 4312 6.0 2.5 4.2 1.2 4333 chrX 22697497 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701830 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-405 2894 chrX 22771515 22771529 chrX 22774796 22774825 297 4 3298 4.0 2.5 3.2 1.0 3310 chrX 22771515 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774825 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-405 2895 chrX 22784064 22784077 chrX 22784166 22784175 4 102 6.5 5.5 6.0 0.6 111 chrX 22784064 intron CR44997 + chrX 22784120 intron CR44997 + chrX 22784175 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-405 2896 chrX 22784080 22784104 chrX 22784162 22784207 12 98 3.0 5.5 4.2 2.3 127 chrX 22784080 intron CR44997 + chrX 22784144 intron CR44997 + chrX 22784207 intron CR44997 + chrX_12_22780001 chrX_22780001 RAL-405 2897 chrX 22811976 22812004 chrX 22816768 22816796 F-element 7 4789 5.5 5.5 5.5 1.1 4820 chrX 22811976 intergenic CG12446 - chrX 22814386 intergenic not near genes chrX 22816796 intergenic not near genes chrX_7_22810001 chrX_22810001 RAL-405 2898 chrX 22824251 22824441 chrX 22824378 22824594 25 147 5.5 8.5 7.0 3.1 343 chrX 22824251 intergenic fog - chrX 22824422 3` UTR fog - chrX 22824594 3` UTR fog - chrX_25_22820001 chrX_22820001 RAL-405 2899 chrX 22922529 22922551 chrX 22922597 22922650 4 76 3.5 2.0 2.8 1.1 121 chrX 22922529 intergenic not near genes chrX 22922590 intergenic not near genes chrX 22922650 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-405 2900 chrX 22987086 22987129 chrX 22989764 22989798 Burdock 11 2673 7.0 4.0 5.5 1.7 2712 chrX 22987086 intron,intron stnA -,stnB - chrX 22988442 intron,intron stnA -,stnB - chrX 22989798 intron,intron stnA -,stnB - chrX_11_22985001 chrX_22985001 RAL-405 2901 chrX 22992387 22992412 chrX 22992528 22992563 6 144 2.5 3.0 2.8 1.6 176 chrX 22992387 intron,intron stnA -,stnB - chrX 22992475 intron,intron stnA -,stnB - chrX 22992563 3` UTR,exon stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-405 2902 chrX 22996295 22996338 chrX 23003547 23003588 roo 13 7249 1.5 6.0 3.8 2.7 7293 chrX 22996295 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003588 intron,intron stnA -,stnB - chrX_13_22995001 chrX_22995001 RAL-405 2903 chrX 23036372 23036411 chrX 23037788 23037832 pogo 6 1416 4.5 6.5 5.5 0.9 1460 chrX 23036372 intron CG12061 + chrX 23037102 intron CG12061 + chrX 23037832 intron CG12061 + chrX_6_23035001 chrX_23035001 RAL-405 2904 chrX 23053475 23053476 chrX 23062412 23062415 diver 4 8938 5.0 5.5 5.2 0.6 8940 chrX 23053475 intergenic not near genes chrX 23057945 intergenic not near genes chrX 23062415 intergenic not near genes chrX_4_23055001 chrX_23055001 RAL-405 2905 chrX 22967481 22967490 chrX 23154541 23154560 diver 5 187059 2.0 16.5 9.2 0.5 187079 chrX 22967481 intergenic not near genes chrX 23061020 intergenic not near genes chrX 23154560 intergenic not near genes chrX_5_23060001 chrX_23060001 RAL-405 2906 chrY 655935 655946 chrY 656131 656142 4 195 0.5 2.0 1.2 1.8 207 chrY 655935 intron kl-2 + chrY 656038 intron kl-2 + chrY 656142 exon kl-2 + chrY_4_655001 chrY_655001 RAL-405 2907 chrY 1419896 1419915 chrY 1420163 1420189 8 269 18.0 16.0 17.0 0.4 293 chrY 1419896 intergenic not near genes chrY 1420042 intergenic not near genes chrY 1420189 intergenic not near genes chrY_8_1420001 chrY_1420001 RAL-405 2908 chrY 1420500 1420694 chrY 1420766 1420797 6 151 7.5 13.0 10.2 0.5 297 chrY 1420500 intergenic not near genes chrY 1420648 intergenic not near genes chrY 1420797 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-405