SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47469 47480 chr2L 52574 52585 jockey 4 5104 0.0 1.5 0.8 2.2 5116 chr2L 47469 intron Cda5 - chr2L 50027 intron Cda5 - chr2L 52585 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-399 2 chr2L 314132 314153 chr2L 314209 314230 6 77 0.0 1.0 0.5 4.0 98 chr2L 314132 intron Plc21C + chr2L 314181 intron Plc21C + chr2L 314230 intron Plc21C + chr2L_6_310001 chr2L_310001 RAL-399 3 chr2L 323455 323477 chr2L 323533 323555 4 78 1.0 0.5 0.8 2.2 100 chr2L 323455 intron Plc21C + chr2L 323505 intron Plc21C + chr2L 323555 intron Plc21C + chr2L_4_320001 chr2L_320001 RAL-399 4 chr2L 1205922 1205940 chr2L 1206001 1206018 4 78 0.0 0.0 0.0 4.0 96 chr2L 1205922 intergenic not near genes chr2L 1205970 intergenic not near genes chr2L 1206018 intergenic not near genes chr2L_4_1205001 chr2L_1205001 RAL-399 5 chr2L 1312876 1312894 chr2L 1312963 1312981 6 87 0.0 1.5 0.8 3.3 105 chr2L 1312876 intergenic not near genes chr2L 1312928 intergenic not near genes chr2L 1312981 intergenic not near genes chr2L_6_1310001 chr2L_1310001 RAL-399 6 chr2L 1392593 1392600 chr2L 1392706 1392714 4 113 0.5 1.5 1.0 2.0 121 chr2L 1392593 intron lea - chr2L 1392654 intron lea - chr2L 1392714 exon lea - chr2L_4_1390001 chr2L_1390001 RAL-399 7 chr2L 1426788 1426818 chr2L 1426869 1426899 4 81 0.5 0.0 0.2 3.3 111 chr2L 1426788 intergenic not near genes chr2L 1426844 intergenic not near genes chr2L 1426899 intergenic not near genes chr2L_4_1425001 chr2L_1425001 RAL-399 8 chr2L 1536504 1536519 chr2L 1536636 1536648 4 131 0.0 2.0 1.0 2.0 144 chr2L 1536504 intergenic not near genes chr2L 1536576 intergenic not near genes chr2L 1536648 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-399 9 chr2L 1678976 1678994 chr2L 1686441 1686459 blood 4 7465 0.0 1.5 0.8 2.2 7483 chr2L 1678976 intron chinmo + chr2L 1682718 intron chinmo + chr2L 1686459 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-399 10 chr2L 1692073 1692095 chr2L 1692154 1692176 4 81 0.5 0.0 0.2 3.3 103 chr2L 1692073 intron chinmo + chr2L 1692124 intron chinmo + chr2L 1692176 intron chinmo + chr2L_4_1690001 chr2L_1690001 RAL-399 11 chr2L 1711356 1711368 chr2L 1711680 1711691 mdg3 4 324 1.0 0.5 0.8 2.2 335 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711691 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-399 12 chr2L 2619223 2619243 chr2L 2619309 2619329 4 86 0.5 0.5 0.5 2.7 106 chr2L 2619223 intergenic not near genes chr2L 2619276 intergenic not near genes chr2L 2619329 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-399 13 chr2L 3073033 3073059 chr2L 3078236 3078262 copia 9 5203 1.5 0.5 1.0 4.5 5229 chr2L 3073033 intron toc - chr2L 3075648 intron toc - chr2L 3078262 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-399 14 chr2L 3112477 3112497 chr2L 3112557 3112576 4 80 0.5 0.0 0.2 3.3 99 chr2L 3112477 intron toc - chr2L 3112526 intron toc - chr2L 3112576 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-399 15 chr2L 3147280 3147301 chr2L 3147357 3147377 5 76 0.5 2.0 1.2 2.3 97 chr2L 3147280 3` UTR Mad - chr2L 3147328 3` UTR Mad - chr2L 3147377 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 RAL-399 16 chr2L 3367012 3367029 chr2L 3367162 3367179 4 150 2.5 0.5 1.5 1.6 167 chr2L 3367012 intron CG34394 - chr2L 3367096 intron CG34394 - chr2L 3367179 intron CG34394 - chr2L_4_3365001 chr2L_3365001 RAL-399 17 chr2L 3582894 3582904 chr2L 3582971 3582981 4 77 0.0 1.5 0.8 2.2 87 chr2L 3582894 intergenic not near genes chr2L 3582938 intergenic not near genes chr2L 3582981 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-399 18 chr2L 3634101 3634120 chr2L 3634183 3634202 4 82 2.5 3.5 3.0 1.0 101 chr2L 3634101 intron for - chr2L 3634152 intron for - chr2L 3634202 intron for - chr2L_4_3630001 chr2L_3630001 RAL-399 19 chr2L 5120974 5121005 chr2L 5121068 5121099 6 94 0.0 0.5 0.2 5.0 125 chr2L 5120974 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_6_5120001 chr2L_5120001 RAL-399 20 chr2L 5242936 5242936 chr2L 16217660 16217660 10 10974724 9.5 6.0 7.8 1.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_10_10730001 chr2L_10730001 RAL-399 21 chr2L 5762445 5762461 chr2L 5762530 5762546 5 85 0.0 1.0 0.5 3.3 101 chr2L 5762445 intergenic CG11030 +,obst-E - chr2L 5762496 intergenic obst-E -,CG11030 + chr2L 5762546 intergenic obst-E -,CG11030 + chr2L_5_5760001 chr2L_5760001 RAL-399 22 chr2L 5827716 5827741 chr2L 5836723 5836749 roo 6 9007 1.0 2.0 1.5 2.4 9033 chr2L 5827716 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-399 23 chr2L 5878751 5878785 chr2L 5878827 5878861 5 76 2.0 0.5 1.2 2.3 110 chr2L 5878751 intron rau - chr2L 5878806 intron rau - chr2L 5878861 intron rau - chr2L_5_5875001 chr2L_5875001 RAL-399 24 chr2L 6275577 6275607 chr2L 6276097 6276127 7 520 0.5 0.0 0.2 5.8 550 chr2L 6275577 intron Ddr + chr2L 6275852 intron Ddr + chr2L 6276127 intron Ddr + chr2L_7_6275001 chr2L_6275001 RAL-399 25 chr2L 6426863 6426889 chr2L 6445122 6445147 roo 5 18259 1.5 1.5 1.5 2.0 18284 chr2L 6426863 3` UTR CG9527 - chr2L 6436005 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-399 26 chr2L 6590101 6590124 chr2L 6590178 6590202 4 78 1.0 0.0 0.5 2.7 101 chr2L 6590101 intron CG11319 - chr2L 6590152 intron CG11319 - chr2L 6590202 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-399 27 chr2L 7249628 7249639 chr2L 7249709 7249722 4 82 1.0 0.5 0.8 2.2 94 chr2L 7249628 intergenic Ndae1 - chr2L 7249675 intergenic Ndae1 - chr2L 7249722 intergenic Ndae1 - chr2L_4_7245001 chr2L_7245001 RAL-399 28 chr2L 7343328 7343356 chr2L 7350444 7350472 roo 5 7116 0.5 1.5 1.0 2.5 7144 chr2L 7343328 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-399 29 chr2L 7629184 7629192 chr2L 7629271 7629279 4 87 0.5 4.5 2.5 1.1 95 chr2L 7629184 intergenic not near genes chr2L 7629232 intergenic not near genes chr2L 7629279 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-399 30 chr2L 7751828 7751851 chr2L 7751911 7751932 5 83 1.0 1.0 1.0 2.5 104 chr2L 7751828 intergenic CG7203 - chr2L 7751880 intergenic CG7203 - chr2L 7751932 intergenic CG7203 - chr2L_5_7750001 chr2L_7750001 RAL-399 31 chr2L 8452422 8452453 chr2L 8461593 8461624 roo 5 9171 1.0 1.5 1.2 2.3 9202 chr2L 8452422 intron fu12 - chr2L 8457023 intron fu12 - chr2L 8461624 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-399 32 chr2L 8588554 8588567 chr2L 8588645 8588658 4 91 1.5 1.0 1.2 1.8 104 chr2L 8588554 intron Sema-1a + chr2L 8588606 intron Sema-1a + chr2L 8588658 intron Sema-1a + chr2L_4_8585001 chr2L_8585001 RAL-399 33 chr2L 8629010 8629237 chr2L 8629094 8629336 6 86 1.5 1.0 1.2 2.7 326 chr2L 8629010 intron Sema-1a + chr2L 8629173 intron Sema-1a + chr2L 8629336 intron Sema-1a + chr2L_6_8625001 chr2L_8625001 RAL-399 34 chr2L 8689704 8689728 chr2L 8689801 8689825 4 97 2.0 2.0 2.0 1.3 121 chr2L 8689704 intron Hnf4 - chr2L 8689764 intron Hnf4 - chr2L 8689825 exon Hnf4 - chr2L_4_8685001 chr2L_8685001 RAL-399 35 chr2L 8883169 8883181 chr2L 8883247 8883259 5 78 0.5 0.0 0.2 4.2 90 chr2L 8883169 intergenic not near genes chr2L 8883214 intergenic not near genes chr2L 8883259 intergenic not near genes chr2L_5_8880001 chr2L_8880001 RAL-399 36 chr2L 9025817 9025843 chr2L 9025901 9025927 5 83 1.5 3.0 2.2 1.6 110 chr2L 9025817 intron,3` UTR CG9582 -,CR44352 - chr2L 9025872 intron,3` UTR CG9582 -,CR44352 - chr2L 9025927 intron,3` UTR CG9582 -,CR44352 - chr2L_5_9025001 chr2L_9025001 RAL-399 37 chr2L 9375837 9375868 chr2L 9377244 9377275 5 1407 0.0 1.5 0.8 2.8 1438 chr2L 9375837 intron Shawl - chr2L 9376556 intron Shawl - chr2L 9377275 intron Shawl - chr2L_5_9375001 chr2L_9375001 RAL-399 38 chr2L 9443071 9443090 chr2L 9443185 9443204 4 114 0.5 1.0 0.8 2.2 133 chr2L 9443071 intron numb + chr2L 9443138 intron numb + chr2L 9443204 intron numb + chr2L_4_9440001 chr2L_9440001 RAL-399 39 chr2L 9973727 9973759 chr2L 9980845 9980878 HMS-Beagle 5 7119 1.0 1.0 1.0 2.5 7151 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-399 40 chr2L 10078125 10078151 chr2L 10078283 10078309 6 158 1.5 0.0 0.8 3.3 184 chr2L 10078125 intron CG44153 - chr2L 10078217 intron CG44153 - chr2L 10078309 intron CG44153 - chr2L_6_10075001 chr2L_10075001 RAL-399 41 chr2L 10572701 10572726 chr2L 10572782 10572807 4 81 2.0 0.5 1.2 1.8 106 chr2L 10572701 intron Trim9 + chr2L 10572754 intron Trim9 + chr2L 10572807 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-399 42 chr2L 10946949 10946975 chr2L 10956164 10956188 roo 4 9214 2.5 2.5 2.5 1.1 9239 chr2L 10946949 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-399 43 chr2L 11292379 11292406 chr2L 11292460 11292487 7 81 1.5 0.0 0.8 3.9 108 chr2L 11292379 intergenic not near genes chr2L 11292433 intergenic not near genes chr2L 11292487 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-399 44 chr2L 11679562 11679586 chr2L 11679641 11679665 4 79 0.5 0.5 0.5 2.7 103 chr2L 11679562 intergenic not near genes chr2L 11679614 intergenic not near genes chr2L 11679665 intergenic not near genes chr2L_4_11675001 chr2L_11675001 RAL-399 45 chr2L 11941736 11941750 chr2L 11941852 11941866 5 116 1.5 2.5 2.0 1.7 130 chr2L 11941736 intergenic not near genes chr2L 11941801 intergenic not near genes chr2L 11941866 intergenic not near genes chr2L_5_11940001 chr2L_11940001 RAL-399 46 chr2L 12085653 12085688 chr2L 12085730 12085765 7 77 1.0 2.5 1.8 2.5 112 chr2L 12085653 5` UTR,5` UTR prd -,CR44592 + chr2L 12085709 5` UTR,5` UTR prd -,CR44592 + chr2L 12085765 5` UTR,5` UTR prd -,CR44592 + chr2L_7_12085001 chr2L_12085001 RAL-399 47 chr2L 12272168 12272187 chr2L 12272244 12272263 4 76 1.5 1.0 1.2 1.8 95 chr2L 12272168 intron aret + chr2L 12272216 intron aret + chr2L 12272263 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-399 48 chr2L 12409104 12409134 chr2L 12409201 12409231 4 98 1.0 0.5 0.8 2.2 127 chr2L 12409104 intron vir-1 - chr2L 12409168 intron vir-1 - chr2L 12409231 intron vir-1 - chr2L_4_12405001 chr2L_12405001 RAL-399 49 chr2L 13003346 13003373 chr2L 13003443 13003470 5 97 1.0 0.5 0.8 2.8 124 chr2L 13003346 intron Vha68-1 - chr2L 13003408 intron Vha68-1 - chr2L 13003470 intron Vha68-1 - chr2L_5_13000001 chr2L_13000001 RAL-399 50 chr2L 13034613 13034628 chr2L 13034811 13034826 5 198 0.5 2.0 1.2 2.3 213 chr2L 13034613 intron CG9932 - chr2L 13034720 intron CG9932 - chr2L 13034826 intron CG9932 - chr2L_5_13030001 chr2L_13030001 RAL-399 51 chr2L 13536283 13536300 chr2L 13536375 13536392 6 92 0.0 2.0 1.0 3.0 109 chr2L 13536283 intron B4 - chr2L 13536338 intron B4 - chr2L 13536392 intron B4 - chr2L_6_13535001 chr2L_13535001 RAL-399 52 chr2L 13761806 13761829 chr2L 13762917 13762940 Doc 5 1111 1.0 0.5 0.8 2.8 1134 chr2L 13761806 intron TM9SF4 + chr2L 13762373 intron TM9SF4 + chr2L 13762940 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-399 53 chr2L 14366261 14366284 chr2L 14366556 14366579 4 295 0.5 0.0 0.2 3.3 318 chr2L 14366261 3` UTR spel1 + chr2L 14366420 3` UTR spel1 + chr2L 14366579 3` UTR spel1 + chr2L_4_14365001 chr2L_14365001 RAL-399 54 chr2L 14575929 14575945 chr2L 14576139 14576155 5 211 8.5 8.0 8.2 0.5 226 chr2L 14575929 intergenic not near genes chr2L 14576042 intergenic CR44856 + chr2L 14576155 intergenic CR44856 + chr2L_5_14575001 chr2L_14575001 RAL-399 55 chr2L 14803887 14803908 chr2L 14809090 14809110 copia 5 5202 2.5 2.0 2.2 1.6 5223 chr2L 14803887 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-399 56 chr2L 14838718 14838738 chr2L 14838803 14838823 6 85 3.5 0.0 1.8 2.1 105 chr2L 14838718 intergenic not near genes chr2L 14838770 intergenic not near genes chr2L 14838823 intergenic not near genes chr2L_6_14835001 chr2L_14835001 RAL-399 57 chr2L 14840989 14841004 chr2L 14841076 14841091 4 87 0.5 0.5 0.5 2.7 102 chr2L 14840989 3` UTR CR43805 - chr2L 14841040 3` UTR CR43805 - chr2L 14841091 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-399 58 chr2L 14889310 14889335 chr2L 14889392 14889417 5 81 0.0 0.5 0.2 4.2 107 chr2L 14889310 intergenic not near genes chr2L 14889364 intergenic not near genes chr2L 14889417 intergenic not near genes chr2L_5_14885001 chr2L_14885001 RAL-399 59 chr2L 14889951 14889984 chr2L 14890376 14890409 jockey 5 425 0.5 0.5 0.5 3.3 458 chr2L 14889951 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890409 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-399 60 chr2L 15018612 15018620 chr2L 15018855 15018863 4 243 0.5 1.0 0.8 2.2 251 chr2L 15018612 intron GABA-B-R1 + chr2L 15018738 intron GABA-B-R1 + chr2L 15018863 intron GABA-B-R1 + chr2L_4_15015001 chr2L_15015001 RAL-399 61 chr2L 15313747 15313769 chr2L 15313868 15313888 4 120 1.0 1.0 1.0 2.0 141 chr2L 15313747 intergenic not near genes chr2L 15313818 intergenic not near genes chr2L 15313888 intergenic not near genes chr2L_4_15310001 chr2L_15310001 RAL-399 62 chr2L 15533267 15533295 chr2L 15533339 15533369 6 74 3.0 0.5 1.8 2.1 102 chr2L 15533267 intergenic not near genes chr2L 15533318 intergenic not near genes chr2L 15533369 intergenic not near genes chr2L_6_15530001 chr2L_15530001 RAL-399 63 chr2L 15956030 15956047 chr2L 15957497 15957514 hobo 4 1467 1.5 1.0 1.2 1.8 1484 chr2L 15956030 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957514 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-399 64 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133320 7.5 6.0 6.8 0.5 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-399 65 chr2L 16217660 16217660 chr2L 18622718 18622718 4 2405058 5.0 5.5 5.2 0.6 2405058 chr2L 16217660 intergenic not near genes chr2L 17420189 intron Dif - chr2L 18622718 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-399 66 chr2L 16367104 16367125 chr2L 16367181 16367202 4 77 0.0 0.0 0.0 4.0 98 chr2L 16367104 intergenic jhamt + chr2L 16367153 intergenic jhamt + chr2L 16367202 intergenic jhamt + chr2L_4_16365001 chr2L_16365001 RAL-399 67 chr2L 17053286 17053307 chr2L 17053696 17053716 4 410 1.5 1.5 1.5 1.6 430 chr2L 17053286 intergenic not near genes chr2L 17053501 intergenic not near genes chr2L 17053716 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-399 68 chr2L 17466974 17466981 chr2L 17467395 17467402 4 421 1.0 2.5 1.8 1.4 428 chr2L 17466974 intron BicD - chr2L 17467188 intron BicD - chr2L 17467402 intron BicD - chr2L_4_17465001 chr2L_17465001 RAL-399 69 chr2L 17543599 17543614 chr2L 17543690 17543707 6 92 1.5 1.0 1.2 2.7 108 chr2L 17543599 intergenic not near genes chr2L 17543653 intergenic not near genes chr2L 17543707 intergenic not near genes chr2L_6_17540001 chr2L_17540001 RAL-399 70 chr2L 17951961 17951981 chr2L 17953428 17953448 hobo 4 1467 0.0 1.5 0.8 2.2 1487 chr2L 17951961 intergenic CR44398 -,CR44397 - chr2L 17952704 intergenic not near genes chr2L 17953448 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-399 71 chr2L 18002109 18002132 chr2L 18002272 18002295 5 163 0.5 1.0 0.8 2.8 186 chr2L 18002109 intergenic not near genes chr2L 18002202 intergenic not near genes chr2L 18002295 intergenic not near genes chr2L_5_18000001 chr2L_18000001 RAL-399 72 chr2L 18408027 18408055 chr2L 18412811 18412839 Doc 4 4784 0.0 0.0 0.0 4.0 4812 chr2L 18408027 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-399 73 chr2L 16217660 16217660 chr2L 18622718 18622719 5 2405059 5.0 5.5 5.2 0.8 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_5_17420001 chr2L_17420001 RAL-399 74 chr2L 18883854 18883945 chr2L 18883934 18884022 6 80 0.0 0.0 0.0 6.0 168 chr2L 18883854 intergenic not near genes chr2L 18883938 intergenic not near genes chr2L 18884022 intergenic not near genes chr2L_6_18880001 chr2L_18880001 RAL-399 75 chr2L 18898403 18898426 chr2L 18898484 18898508 4 82 1.5 0.0 0.8 2.2 105 chr2L 18898403 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-399 76 chr2L 18981395 18981415 chr2L 18981477 18981498 4 82 1.5 0.0 0.8 2.2 103 chr2L 18981395 intron Swip-1 - chr2L 18981446 intron Swip-1 - chr2L 18981498 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-399 77 chr2L 19101838 19101854 chr2L 19101924 19101940 4 86 1.0 0.5 0.8 2.2 102 chr2L 19101838 intron Lim3 - chr2L 19101889 intron Lim3 - chr2L 19101940 intron Lim3 - chr2L_4_19100001 chr2L_19100001 RAL-399 78 chr2L 19147383 19147391 chr2L 19154418 19154426 297 4 7035 2.0 0.5 1.2 1.8 7043 chr2L 19147383 intron brat + chr2L 19150904 intron brat + chr2L 19154426 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-399 79 chr2L 19380508 19380529 chr2L 19380588 19380609 4 80 0.0 0.5 0.2 3.3 101 chr2L 19380508 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_4_19380001 chr2L_19380001 RAL-399 80 chr2L 19597273 19597304 chr2L 19597506 19597537 5 233 0.0 1.0 0.5 3.3 264 chr2L 19597273 intron Lar + chr2L 19597405 intron Lar + chr2L 19597537 intron Lar + chr2L_5_19595001 chr2L_19595001 RAL-399 81 chr2L 19620093 19620131 chr2L 19621082 19621120 jockey 10 989 0.0 1.0 0.5 6.7 1027 chr2L 19620093 intron Lar + chr2L 19620606 intron Lar + chr2L 19621120 intron Lar + chr2L_10_19620001 chr2L_19620001 RAL-399 82 chr2L 19689065 19689089 chr2L 19689169 19689191 4 104 1.0 0.5 0.8 2.2 126 chr2L 19689065 intron Lar + chr2L 19689128 intron Lar + chr2L 19689191 intron Lar + chr2L_4_19685001 chr2L_19685001 RAL-399 83 chr2L 19947724 19947731 chr2L 19947810 19947816 4 86 0.5 0.5 0.5 2.7 92 chr2L 19947724 intron sick + chr2L 19947770 intron sick + chr2L 19947816 intron sick + chr2L_4_19945001 chr2L_19945001 RAL-399 84 chr2L 20041431 20041457 chr2L 20041516 20041540 6 85 2.5 1.5 2.0 2.0 109 chr2L 20041431 intron sNPF + chr2L 20041486 intron sNPF + chr2L 20041540 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-399 85 chr2L 20250939 20250954 chr2L 20251017 20251032 4 77 1.0 1.0 1.0 2.0 93 chr2L 20250939 intergenic not near genes chr2L 20250986 intergenic not near genes chr2L 20251032 intergenic not near genes chr2L_4_20250001 chr2L_20250001 RAL-399 86 chr2L 20272116 20272144 chr2L 20282826 20282855 copia 5 10711 2.0 1.5 1.8 1.8 10739 chr2L 20272116 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-399 87 chr2L 20300002 20300020 chr2L 20300088 20300106 5 87 2.5 1.0 1.8 1.8 104 chr2L 20300002 intergenic not near genes chr2L 20300054 intergenic not near genes chr2L 20300106 intergenic not near genes chr2L_5_20300001 chr2L_20300001 RAL-399 88 chr2L 20303162 20303171 chr2L 20310630 20310639 blood 5 7468 0.0 1.0 0.5 3.3 7477 chr2L 20303162 intergenic not near genes chr2L 20306900 intergenic not near genes chr2L 20310639 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-399 89 chr2L 20553186 20553221 chr2L 20553261 20553297 5 76 0.0 0.5 0.2 4.2 111 chr2L 20553186 intergenic not near genes chr2L 20553242 intergenic not near genes chr2L 20553297 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-399 90 chr2L 20576230 20576251 chr2L 20583697 20583719 blood 4 7468 1.0 0.0 0.5 2.7 7489 chr2L 20576230 intergenic not near genes chr2L 20579974 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-399 91 chr2L 20672176 20672201 chr2L 20672258 20672284 6 83 1.5 0.0 0.8 3.3 108 chr2L 20672176 intron CG31678 - chr2L 20672230 intron CG31678 - chr2L 20672284 intron CG31678 - chr2L_6_20670001 chr2L_20670001 RAL-399 92 chr2L 20901471 20901489 chr2L 20902635 20902652 1360 4 1164 0.0 0.5 0.2 3.3 1181 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-399 93 chr2L 20946947 20946962 chr2L 20947033 20947049 4 86 2.0 0.0 1.0 2.0 102 chr2L 20946947 intergenic CR44606 - chr2L 20946998 intergenic CR44606 - chr2L 20947049 intergenic CR44606 - chr2L_4_20945001 chr2L_20945001 RAL-399 94 chr2L 21020272 21020309 chr2L 21023949 21023986 NOF 5 3677 1.0 1.0 1.0 2.5 3714 chr2L 21020272 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-399 95 chr2L 21193340 21193357 chr2L 21193424 21193441 4 84 1.5 0.5 1.0 2.0 101 chr2L 21193340 intron Ret - chr2L 21193390 intron Ret - chr2L 21193441 intron Ret - chr2L_4_21190001 chr2L_21190001 RAL-399 96 chr2R 1082367 1082385 chr2R 1087143 1087161 Doc 7 4776 0.5 2.5 1.5 2.8 4794 chr2R 1082367 intron rl + chr2R 1084764 intron rl + chr2R 1087161 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-399 97 chr2R 5075222 5075246 chr2R 5075349 5075374 8 128 0.5 0.0 0.2 6.7 152 chr2R 5075222 intergenic not near genes chr2R 5075298 intergenic not near genes chr2R 5075374 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-399 98 chr2R 5256757 5256788 chr2R 5256845 5256876 8 88 2.5 1.5 2.0 2.7 119 chr2R 5256757 intergenic not near genes chr2R 5256816 intergenic not near genes chr2R 5256876 intergenic not near genes chr2R_8_5255001 chr2R_5255001 RAL-399 99 chr2R 5418001 5418017 chr2R 5420633 5420649 Burdock 4 2632 1.0 1.5 1.2 1.8 2648 chr2R 5418001 intron laccase2 + chr2R 5419325 intron laccase2 + chr2R 5420649 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-399 100 chr2R 5491674 5491696 chr2R 5491767 5491789 4 93 0.5 0.5 0.5 2.7 115 chr2R 5491674 intron CG30440 - chr2R 5491732 intron CG30440 - chr2R 5491789 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-399 101 chr2R 5834097 5834117 chr2R 5834264 5834283 4 166 1.0 0.5 0.8 2.2 186 chr2R 5834097 intron dpr12 + chr2R 5834190 intron dpr12 + chr2R 5834283 intron dpr12 + chr2R_4_5830001 chr2R_5830001 RAL-399 102 chr2R 5879351 5879383 chr2R 5879542 5879574 5 191 2.0 1.5 1.8 1.8 223 chr2R 5879351 3` UTR CG44438 - chr2R 5879462 3` UTR CG44438 - chr2R 5879574 exon CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-399 103 chr2R 5947937 5947954 chr2R 5948088 5948105 4 151 1.5 0.0 0.8 2.2 168 chr2R 5947937 intergenic not near genes chr2R 5948021 intergenic not near genes chr2R 5948105 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-399 104 chr2R 6546722 6546744 chr2R 6546823 6546845 4 101 1.0 0.5 0.8 2.2 123 chr2R 6546722 intron jing + chr2R 6546784 intron jing + chr2R 6546845 intron jing + chr2R_4_6545001 chr2R_6545001 RAL-399 105 chr2R 6893824 6893847 chr2R 6893903 6893924 5 79 1.0 0.5 0.8 2.8 100 chr2R 6893824 intron CG30158 + chr2R 6893874 intron CG30158 + chr2R 6893924 intron CG30158 + chr2R_5_6890001 chr2R_6890001 RAL-399 106 chr2R 6978647 6978670 chr2R 6978830 6978853 4 183 1.0 1.0 1.0 2.0 206 chr2R 6978647 intron vimar - chr2R 6978750 intron vimar - chr2R 6978853 intron vimar - chr2R_4_6975001 chr2R_6975001 RAL-399 107 chr2R 7235822 7235846 chr2R 7240914 7240936 jockey 4 5090 0.0 0.5 0.2 3.3 5114 chr2R 7235822 intergenic not near genes chr2R 7238379 intergenic not near genes chr2R 7240936 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-399 108 chr2R 7636843 7636872 chr2R 7637506 7637535 5 662 0.5 0.0 0.2 4.2 692 chr2R 7636843 intron CG43340 + chr2R 7637189 intron CG43340 + chr2R 7637535 intron CG43340 + chr2R_5_7635001 chr2R_7635001 RAL-399 109 chr2R 7851261 7851287 chr2R 7851347 7851372 4 86 0.5 0.5 0.5 2.7 111 chr2R 7851261 intron Dgk - chr2R 7851316 intron Dgk - chr2R 7851372 intron Dgk - chr2R_4_7850001 chr2R_7850001 RAL-399 110 chr2R 7869187 7869202 chr2R 7873973 7873986 Doc 5 4786 2.0 1.5 1.8 1.8 4799 chr2R 7869187 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873986 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-399 111 chr2R 8006844 8006877 chr2R 8007003 8007035 6 159 0.5 1.0 0.8 3.3 191 chr2R 8006844 intergenic Odc1 +,Odc2 + chr2R 8006940 intergenic Odc1 +,Odc2 + chr2R 8007035 intergenic Odc2 +,Odc1 + chr2R_6_8005001 chr2R_8005001 RAL-399 112 chr2R 8008872 8008887 chr2R 8008971 8008986 4 99 1.0 1.0 1.0 2.0 114 chr2R 8008872 exon Odc2 + chr2R 8008929 exon Odc2 + chr2R 8008986 exon Odc2 + chr2R_4_8005001 chr2R_8005001 RAL-399 113 chr2R 8398211 8398237 chr2R 8402990 8403018 Doc 5 4780 1.0 0.5 0.8 2.8 4807 chr2R 8398211 intron CG2121 - chr2R 8400614 intron CG2121 - chr2R 8403018 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-399 114 chr2R 8536211 8536230 chr2R 8536443 8536462 5 232 0.5 1.0 0.8 2.8 251 chr2R 8536211 intergenic not near genes chr2R 8536336 intergenic not near genes chr2R 8536462 intergenic not near genes chr2R_5_8535001 chr2R_8535001 RAL-399 115 chr2R 9151311 9151322 chr2R 9157781 9157792 Burdock 4 6470 3.0 1.5 2.2 1.2 6481 chr2R 9151311 3` UTR CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157792 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-399 116 chr2R 9267990 9268005 chr2R 9268076 9268091 4 86 0.5 0.5 0.5 2.7 101 chr2R 9267990 intron Pkn - chr2R 9268040 intron Pkn - chr2R 9268091 intron Pkn - chr2R_4_9265001 chr2R_9265001 RAL-399 117 chr2R 9368130 9368149 chr2R 9368206 9368223 6 76 2.0 0.0 1.0 3.0 93 chr2R 9368130 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-399 118 chr2R 9379938 9379959 chr2R 9380014 9380034 5 76 2.5 1.5 2.0 1.7 96 chr2R 9379938 intron CG13954 - chr2R 9379986 intron CG13954 - chr2R 9380034 intron CG13954 - chr2R_5_9375001 chr2R_9375001 RAL-399 119 chr2R 9669135 9669166 chr2R 9669236 9669267 4 101 1.0 1.0 1.0 2.0 132 chr2R 9669135 intron Mmp2 - chr2R 9669201 intron Mmp2 - chr2R 9669267 intron Mmp2 - chr2R_4_9665001 chr2R_9665001 RAL-399 120 chr2R 10005851 10005880 chr2R 10007016 10007045 1360 5 1165 1.0 1.0 1.0 2.5 1194 chr2R 10005851 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-399 121 chr2R 10189202 10189237 chr2R 10189279 10189315 4 78 0.0 0.5 0.2 3.3 113 chr2R 10189202 intron KCNQ - chr2R 10189258 intron KCNQ - chr2R 10189315 intron KCNQ - chr2R_4_10185001 chr2R_10185001 RAL-399 122 chr2R 10313318 10313346 chr2R 10313406 10313434 7 88 0.0 1.5 0.8 3.9 116 chr2R 10313318 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313434 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-399 123 chr2R 10585580 10585591 chr2R 10594163 10594174 Tirant 4 8583 1.0 1.0 1.0 2.0 8594 chr2R 10585580 intron psq + chr2R 10589877 intron psq + chr2R 10594174 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-399 124 chr2R 10658057 10658072 chr2R 10658149 10658164 4 92 1.0 1.5 1.2 1.8 107 chr2R 10658057 intergenic not near genes chr2R 10658110 intergenic not near genes chr2R 10658164 intergenic not near genes chr2R_4_10655001 chr2R_10655001 RAL-399 125 chr2R 10827339 10827352 chr2R 10827427 10827440 5 88 0.5 2.0 1.2 2.3 101 chr2R 10827339 exon CG12325 + chr2R 10827390 3` UTR CG12325 + chr2R 10827440 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_5_10825001 chr2R_10825001 RAL-399 126 chr2R 10937797 10937826 chr2R 10937935 10937964 5 138 0.0 1.0 0.5 3.3 167 chr2R 10937797 intergenic not near genes chr2R 10937880 intergenic not near genes chr2R 10937964 intergenic Spn47C - chr2R_5_10935001 chr2R_10935001 RAL-399 127 chr2R 11115549 11115563 chr2R 11115651 11115665 4 102 3.0 2.0 2.5 1.1 116 chr2R 11115549 intron luna - chr2R 11115607 intron luna - chr2R 11115665 intron luna - chr2R_4_11115001 chr2R_11115001 RAL-399 128 chr2R 11144291 11144314 chr2R 11144392 11144415 4 101 0.5 0.0 0.2 3.3 124 chr2R 11144291 intron CG13229 - chr2R 11144353 intron CG13229 - chr2R 11144415 intron CG13229 - chr2R_4_11140001 chr2R_11140001 RAL-399 129 chr2R 11419875 11419897 chr2R 11420005 11420027 4 130 0.0 0.5 0.2 3.3 152 chr2R 11419875 intron Drip - chr2R 11419951 intron Drip - chr2R 11420027 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-399 130 chr2R 11472649 11472678 chr2R 11473846 11473870 pogo 5 1196 1.0 1.0 1.0 2.5 1221 chr2R 11472649 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473870 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-399 131 chr2R 11485116 11485139 chr2R 11485196 11485221 5 82 0.5 1.0 0.8 2.8 105 chr2R 11485116 intron inv + chr2R 11485168 intron inv + chr2R 11485221 intron inv + chr2R_5_11485001 chr2R_11485001 RAL-399 132 chr2R 11654204 11654232 chr2R 11654279 11654309 4 76 1.5 0.0 0.8 2.2 105 chr2R 11654204 intron Roc2 - chr2R 11654256 intron Roc2 - chr2R 11654309 intron Roc2 - chr2R_4_11650001 chr2R_11650001 RAL-399 133 chr2R 12187472 12187505 chr2R 12190090 12190121 20 2617 35.0 23.0 29.0 0.7 2649 chr2R 12187472 exon Cyp6g1 + chr2R 12188796 exon Cyp6g2 - chr2R 12190121 exon Cyp6g2 - chr2R_20_12185001 chr2R_12185001 RAL-399 134 chr2R 13136847 13136857 chr2R 13141645 13141655 Doc 6 4798 2.5 1.5 2.0 2.0 4808 chr2R 13136847 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141655 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-399 135 chr2R 13438860 13438893 chr2R 13440178 13440211 5 1318 3.0 9.5 6.2 0.7 1351 chr2R 13438860 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_5_13435001 chr2R_13435001 RAL-399 136 chr2R 13464474 13464479 chr2R 13464605 13464610 4 131 1.0 1.5 1.2 1.8 136 chr2R 13464474 intron arr - chr2R 13464542 intron arr - chr2R 13464610 intron arr - chr2R_4_13460001 chr2R_13460001 RAL-399 137 chr2R 14266766 14266787 chr2R 14266841 14266863 5 76 2.0 2.0 2.0 1.7 97 chr2R 14266766 intron CG8547 - chr2R 14266814 intron CG8547 - chr2R 14266863 intron CG8547 - chr2R_5_14265001 chr2R_14265001 RAL-399 138 chr2R 14278361 14278368 chr2R 14278439 14278446 4 78 1.5 1.5 1.5 1.6 85 chr2R 14278361 5` UTR Ih + chr2R 14278404 5` UTR Ih + chr2R 14278446 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-399 139 chr2R 14373503 14373528 chr2R 14373590 14373615 4 87 0.5 3.5 2.0 1.3 112 chr2R 14373503 exon Obp50d + chr2R 14373559 exon Obp50d + chr2R 14373615 exon Obp50d + chr2R_4_14370001 chr2R_14370001 RAL-399 140 chr2R 14816110 14816133 chr2R 14816205 14816229 4 95 1.5 1.0 1.2 1.8 119 chr2R 14816110 intergenic not near genes chr2R 14816170 intergenic not near genes chr2R 14816229 intergenic not near genes chr2R_4_14815001 chr2R_14815001 RAL-399 141 chr2R 15119318 15119351 chr2R 15127799 15127832 Tirant 5 8481 0.5 1.0 0.8 2.8 8514 chr2R 15119318 intron chn + chr2R 15123575 intron chn + chr2R 15127832 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-399 142 chr2R 16054954 16054961 chr2R 16055037 16055041 4 82 4.0 4.0 4.0 0.8 87 chr2R 16054954 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055041 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-399 143 chr2R 16571886 16571902 chr2R 16571980 16571997 4 94 1.0 0.0 0.5 2.7 111 chr2R 16571886 intergenic CG4927 + chr2R 16571942 intergenic CG4927 + chr2R 16571997 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-399 144 chr2R 17147243 17147270 chr2R 17152274 17152301 jockey 4 5031 1.5 0.5 1.0 2.0 5058 chr2R 17147243 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-399 145 chr2R 17485912 17485928 chr2R 17490674 17490690 F-element 4 4762 0.5 0.5 0.5 2.7 4778 chr2R 17485912 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488301 intron NT5E-2 + chr2R 17490690 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-399 146 chr2R 17982925 17982948 chr2R 17983010 17983033 4 85 1.0 1.5 1.2 1.8 108 chr2R 17982925 intron dpr13 - chr2R 17982979 intron dpr13 - chr2R 17983033 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-399 147 chr2R 17990770 17990797 chr2R 17990919 17990944 5 148 0.5 0.5 0.5 3.3 174 chr2R 17990770 intron dpr13 - chr2R 17990857 intron dpr13 - chr2R 17990944 intron dpr13 - chr2R_5_17990001 chr2R_17990001 RAL-399 148 chr2R 18307572 18307605 chr2R 18307660 18307693 5 88 0.5 0.5 0.5 3.3 121 chr2R 18307572 intron sbb - chr2R 18307632 intron sbb - chr2R 18307693 intron sbb - chr2R_5_18305001 chr2R_18305001 RAL-399 149 chr2R 18358391 18358414 chr2R 18372603 18372626 roo 7 14212 0.0 0.5 0.2 5.8 14235 chr2R 18358391 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372626 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-399 150 chr2R 18486847 18486880 chr2R 18487108 18487142 6 262 1.0 1.0 1.0 3.0 295 chr2R 18486847 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487142 intron CG30116 - chr2R_6_18485001 chr2R_18485001 RAL-399 151 chr2R 18605136 18605154 chr2R 18605228 18605246 5 92 0.0 1.0 0.5 3.3 110 chr2R 18605136 intron GEFmeso - chr2R 18605191 intron GEFmeso - chr2R 18605246 intron GEFmeso - chr2R_5_18605001 chr2R_18605001 RAL-399 152 chr2R 19601271 19601297 chr2R 19601361 19601387 4 90 0.5 2.0 1.2 1.8 116 chr2R 19601271 intron sm - chr2R 19601329 intron sm - chr2R 19601387 intron sm - chr2R_4_19600001 chr2R_19600001 RAL-399 153 chr2R 19991020 19991039 chr2R 19991156 19991174 5 136 1.0 2.5 1.8 1.8 154 chr2R 19991020 intergenic not near genes chr2R 19991097 intergenic not near genes chr2R 19991174 intergenic not near genes chr2R_5_19990001 chr2R_19990001 RAL-399 154 chr2R 21380187 21380207 chr2R 21380346 21380366 4 159 1.5 1.0 1.2 1.8 179 chr2R 21380187 intergenic not near genes chr2R 21380276 intergenic not near genes chr2R 21380366 intergenic not near genes chr2R_4_21380001 chr2R_21380001 RAL-399 155 chr2R 21534111 21534129 chr2R 21534198 21534216 4 87 1.5 1.5 1.5 1.6 105 chr2R 21534111 intron Egfr + chr2R 21534164 intron Egfr + chr2R 21534216 intron Egfr + chr2R_4_21530001 chr2R_21530001 RAL-399 156 chr2R 21753093 21753103 chr2R 21753578 21753588 roo 6 485 0.5 0.5 0.5 4.0 495 chr2R 21753093 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753588 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-399 157 chr2R 21832419 21832449 chr2R 21832825 21832855 4 406 0.0 1.0 0.5 2.7 436 chr2R 21832419 intergenic CG34040 - chr2R 21832637 exon CG34040 - chr2R 21832855 exon CG34040 - chr2R_4_21830001 chr2R_21830001 RAL-399 158 chr2R 22072685 22072703 chr2R 22072770 22072787 5 85 1.0 0.0 0.5 3.3 102 chr2R 22072685 intron CG11474 - chr2R 22072736 intron CG11474 - chr2R 22072787 intron CG11474 - chr2R_5_22070001 chr2R_22070001 RAL-399 159 chr2R 22109285 22109317 chr2R 22109362 22109394 5 77 0.5 1.0 0.8 2.8 109 chr2R 22109285 intron Vrp1 - chr2R 22109340 intron Vrp1 - chr2R 22109394 intron Vrp1 - chr2R_5_22105001 chr2R_22105001 RAL-399 160 chr2R 22248842 22248868 chr2R 22248919 22248945 4 77 2.5 1.5 2.0 1.3 103 chr2R 22248842 intron dve + chr2R 22248894 intron dve + chr2R 22248945 intron dve + chr2R_4_22245001 chr2R_22245001 RAL-399 161 chr2R 22518113 22518143 chr2R 22518194 22518224 6 81 0.0 1.5 0.8 3.3 111 chr2R 22518113 intron px - chr2R 22518168 intron px - chr2R 22518224 intron px - chr2R_6_22515001 chr2R_22515001 RAL-399 162 chr2R 22525754 22525770 chr2R 22529309 22529325 jockey 4 3555 1.0 2.0 1.5 1.6 3571 chr2R 22525754 intron px - chr2R 22527540 intron px - chr2R 22529325 intron px - chr2R_4_22525001 chr2R_22525001 RAL-399 163 chr2R 22623460 22623486 chr2R 22623598 22623624 5 139 1.0 0.5 0.8 2.8 164 chr2R 22623460 intron CG33143 + chr2R 22623542 intron CG33143 + chr2R 22623624 intron CG33143 + chr2R_5_22620001 chr2R_22620001 RAL-399 164 chr2R 23748200 23748226 chr2R 23748319 23748344 5 119 0.0 2.0 1.0 2.5 144 chr2R 23748200 3` UTR CG13560 + chr2R 23748272 3` UTR CG13560 + chr2R 23748344 3` UTR CG13560 + chr2R_5_23745001 chr2R_23745001 RAL-399 165 chr2R 23758326 23758350 chr2R 23758402 23758426 4 76 2.0 1.0 1.5 1.6 100 chr2R 23758326 intron CG9850 - chr2R 23758376 intron CG9850 - chr2R 23758426 intron CG9850 - chr2R_4_23755001 chr2R_23755001 RAL-399 166 chr2R 24177237 24177249 chr2R 24184721 24184734 412 4 7484 2.5 1.5 2.0 1.3 7497 chr2R 24177237 3` UTR Nop60B + chr2R 24180986 intron Nop60B + chr2R 24184734 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-399 167 chr2R 24353427 24353452 chr2R 24361789 24361814 roo 4 8362 0.5 1.0 0.8 2.2 8387 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361814 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-399 168 chr2R 24520619 24520644 chr2R 24520702 24520727 6 83 1.0 1.5 1.2 2.7 108 chr2R 24520619 exon Ir60d + chr2R 24520673 exon Ir60d + chr2R 24520727 exon Ir60d + chr2R_6_24520001 chr2R_24520001 RAL-399 169 chr2R 24592952 24592966 chr2R 24593044 24593058 4 92 2.0 1.5 1.8 1.4 106 chr2R 24592952 intron pio + chr2R 24593005 intron pio + chr2R 24593058 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-399 170 chr2R 24718461 24718488 chr2R 24718541 24718570 5 82 1.0 0.5 0.8 2.8 109 chr2R 24718461 intron Mid1 - chr2R 24718516 intron Mid1 - chr2R 24718570 intron Mid1 - chr2R_5_24715001 chr2R_24715001 RAL-399 171 chr2R 24719801 24719823 chr2R 24719913 24719934 4 112 1.5 2.0 1.8 1.4 133 chr2R 24719801 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719934 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-399 172 chr2R 24727884 24727916 chr2R 24735392 24735424 mdg1 6 7508 1.5 0.5 1.0 3.0 7540 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-399 173 chr2R 25101284 25101309 chr2R 25101386 25101406 4 100 1.0 1.5 1.2 1.8 122 chr2R 25101284 intron lov - chr2R 25101345 intron lov - chr2R 25101406 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-399 174 chr3L 933910 933922 chr3L 934012 934023 4 102 2.0 1.5 1.8 1.4 113 chr3L 933910 intron Glut1 + chr3L 933966 intron Glut1 + chr3L 934023 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-399 175 chr3L 949892 949914 chr3L 949977 949999 4 85 1.0 0.5 0.8 2.2 107 chr3L 949892 intron Glut1 + chr3L 949946 intron Glut1 + chr3L 949999 intron Glut1 + chr3L_4_945001 chr3L_945001 RAL-399 176 chr3L 1031593 1031601 chr3L 1031669 1031676 4 75 2.0 3.0 2.5 1.1 83 chr3L 1031593 intron trio - chr3L 1031634 intron trio - chr3L 1031676 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-399 177 chr3L 1042961 1042984 chr3L 1043039 1043062 7 78 1.0 1.0 1.0 3.5 101 chr3L 1042961 intron bab1 - chr3L 1043012 intron bab1 - chr3L 1043062 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-399 178 chr3L 1219598 1219624 chr3L 1227328 1227357 412 4 7732 0.5 1.5 1.0 2.0 7759 chr3L 1219598 intron mwh + chr3L 1223478 intron mwh + chr3L 1227357 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-399 179 chr3L 1347159 1347189 chr3L 1347243 1347274 5 85 2.5 2.5 2.5 1.4 115 chr3L 1347159 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347274 intron Ptp61F - chr3L_5_1345001 chr3L_1345001 RAL-399 180 chr3L 1674348 1674353 chr3L 1674430 1674435 4 82 0.5 3.0 1.8 1.4 87 chr3L 1674348 intergenic CG7991 + chr3L 1674392 intergenic CG7991 + chr3L 1674435 intergenic CG7991 + chr3L_4_1670001 chr3L_1670001 RAL-399 181 chr3L 1817571 1817594 chr3L 1817656 1817679 7 85 0.5 1.0 0.8 3.9 108 chr3L 1817571 intron GV1 + chr3L 1817625 intron GV1 + chr3L 1817679 intron GV1 + chr3L_7_1815001 chr3L_1815001 RAL-399 182 chr3L 2218486 2218510 chr3L 2218562 2218586 4 76 1.5 1.0 1.2 1.8 100 chr3L 2218486 intergenic not near genes chr3L 2218536 intergenic not near genes chr3L 2218586 intergenic not near genes chr3L_4_2215001 chr3L_2215001 RAL-399 183 chr3L 2548254 2548281 chr3L 2548343 2548370 4 89 1.0 2.5 1.8 1.4 116 chr3L 2548254 intron Spn - chr3L 2548312 intron Spn - chr3L 2548370 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-399 184 chr3L 3317534 3317559 chr3L 3317613 3317638 4 79 0.5 1.0 0.8 2.2 104 chr3L 3317534 intergenic Drsl5 +,PIG-C - chr3L 3317586 intergenic PIG-C -,Drsl5 + chr3L 3317638 intergenic PIG-C -,Drsl5 + chr3L_4_3315001 chr3L_3315001 RAL-399 185 chr3L 3815064 3815075 chr3L 3815145 3815153 4 80 1.0 1.5 1.2 1.8 89 chr3L 3815064 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815153 intron,intron Scsalpha +,CR43932 - chr3L_4_3815001 chr3L_3815001 RAL-399 186 chr3L 4232301 4232323 chr3L 4232381 4232400 5 79 1.0 0.5 0.8 2.8 99 chr3L 4232301 intron ImpL2 - chr3L 4232350 intron ImpL2 - chr3L 4232400 intron ImpL2 - chr3L_5_4230001 chr3L_4230001 RAL-399 187 chr3L 4638772 4638781 chr3L 4638875 4638884 4 103 2.0 0.5 1.2 1.8 112 chr3L 4638772 intron axo - chr3L 4638828 intron axo - chr3L 4638884 intron axo - chr3L_4_4635001 chr3L_4635001 RAL-399 188 chr3L 4858301 4858336 chr3L 4858391 4858425 6 90 1.5 2.0 1.8 2.1 124 chr3L 4858301 intergenic not near genes chr3L 4858363 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-399 189 chr3L 5045458 5045484 chr3L 5050239 5050265 Doc 5 4781 0.5 0.0 0.2 4.2 4807 chr3L 5045458 intron Con - chr3L 5047862 intron Con - chr3L 5050265 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-399 190 chr3L 5104500 5104512 chr3L 5124634 5124646 4 20134 0.0 1.0 0.5 2.7 20146 chr3L 5104500 intergenic not near genes chr3L 5114573 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-399 191 chr3L 5220838 5220857 chr3L 5220933 5220952 4 95 0.5 0.0 0.2 3.3 114 chr3L 5220838 intron shep - chr3L 5220895 intron shep - chr3L 5220952 intron shep - chr3L_4_5220001 chr3L_5220001 RAL-399 192 chr3L 5886410 5886441 chr3L 5886489 5886521 7 79 1.5 1.5 1.5 2.8 111 chr3L 5886410 intergenic not near genes chr3L 5886466 intergenic not near genes chr3L 5886521 intergenic not near genes chr3L_7_5885001 chr3L_5885001 RAL-399 193 chr3L 5926327 5926349 chr3L 5926514 5926539 BS 4 188 1.0 2.5 1.8 1.4 212 chr3L 5926327 intron Vap-33B + chr3L 5926433 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-399 194 chr3L 6052655 6052661 chr3L 6052740 6052746 4 85 2.0 4.0 3.0 1.0 91 chr3L 6052655 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052746 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-399 195 chr3L 6652084 6652108 chr3L 6652162 6652186 4 78 1.0 1.0 1.0 2.0 102 chr3L 6652084 intergenic not near genes chr3L 6652135 intergenic not near genes chr3L 6652186 intergenic not near genes chr3L_4_6650001 chr3L_6650001 RAL-399 196 chr3L 7033177 7033196 chr3L 7033255 7033276 4 80 2.0 0.5 1.2 1.8 99 chr3L 7033177 intron Mp + chr3L 7033226 intron Mp + chr3L 7033276 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-399 197 chr3L 8395843 8395869 chr3L 8395936 8395964 4 95 0.5 1.0 0.8 2.2 121 chr3L 8395843 intergenic CG7120 + chr3L 8395904 intergenic CG7120 + chr3L 8395964 intergenic CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-399 198 chr3L 8849210 8849243 chr3L 8849290 8849323 4 80 2.0 0.0 1.0 2.0 113 chr3L 8849210 intron dally + chr3L 8849266 intron dally + chr3L 8849323 intron dally + chr3L_4_8845001 chr3L_8845001 RAL-399 199 chr3L 9076929 9076946 chr3L 9084489 9084506 412 5 7560 1.0 1.0 1.0 2.5 7577 chr3L 9076929 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084506 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-399 200 chr3L 9219242 9219258 chr3L 9219914 9219930 jockey 4 672 2.5 1.5 2.0 1.3 688 chr3L 9219242 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219930 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-399 201 chr3L 9359596 9359613 chr3L 9359687 9359704 4 91 1.0 0.5 0.8 2.2 108 chr3L 9359596 3` UTR CG32039 + chr3L 9359650 3` UTR CG32039 + chr3L 9359704 3` UTR CG32039 + chr3L_4_9355001 chr3L_9355001 RAL-399 202 chr3L 9575908 9575918 chr3L 9580986 9580996 jockey 4 5078 1.0 0.5 0.8 2.2 5088 chr3L 9575908 intron CG42673 + chr3L 9578452 intron CG42673 + chr3L 9580996 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-399 203 chr3L 9639045 9639055 chr3L 9639130 9639140 4 84 0.0 1.0 0.5 2.7 95 chr3L 9639045 intron fry - chr3L 9639092 intron fry - chr3L 9639140 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-399 204 chr3L 10308746 10308765 chr3L 10308823 10308838 4 76 1.0 0.0 0.5 2.7 92 chr3L 10308746 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308838 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-399 205 chr3L 10414942 10414959 chr3L 10417314 10417329 Doc 4 2371 1.5 0.0 0.8 2.2 2387 chr3L 10414942 intergenic CG12362 + chr3L 10416136 intergenic not near genes chr3L 10417329 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-399 206 chr3L 10956453 10956466 chr3L 10956569 10956584 4 118 0.5 2.0 1.2 1.8 131 chr3L 10956453 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956584 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-399 207 chr3L 11158183 11158405 chr3L 11158363 11158537 7 139 6.5 6.5 6.5 0.9 354 chr3L 11158183 exon CG32082 + chr3L 11158360 exon CG32082 + chr3L 11158537 exon CG32082 + chr3L_7_11155001 chr3L_11155001 RAL-399 208 chr3L 11158524 11158789 chr3L 11158639 11158935 6 130 5.0 8.0 6.5 0.8 411 chr3L 11158524 exon CG32082 + chr3L 11158730 exon CG32082 + chr3L 11158935 exon CG32082 + chr3L_6_11155001 chr3L_11155001 RAL-399 209 chr3L 12034883 12034898 chr3L 12034960 12034975 4 77 1.0 1.0 1.0 2.0 92 chr3L 12034883 intron rols - chr3L 12034929 intron rols - chr3L 12034975 intron rols - chr3L_4_12030001 chr3L_12030001 RAL-399 210 chr3L 11777678 11777678 chr3L 12638619 12638627 4 860944 4.5 6.0 5.2 0.6 860949 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638627 intron CR32111 + chr3L_4_12205001 chr3L_12205001 RAL-399 211 chr3L 13525166 13525190 chr3L 13532962 13532986 roo 6 7796 1.5 3.0 2.2 1.9 7820 chr3L 13525166 intergenic not near genes chr3L 13529076 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_6_13525001 chr3L_13525001 RAL-399 212 chr3L 13677529 13677555 chr3L 13677606 13677632 4 77 0.5 0.5 0.5 2.7 103 chr3L 13677529 intron bru-3 - chr3L 13677580 intron bru-3 - chr3L 13677632 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-399 213 chr3L 13894140 13894147 chr3L 13894219 13894226 4 80 0.0 1.0 0.5 2.7 86 chr3L 13894140 intron dysc - chr3L 13894183 intron dysc - chr3L 13894226 intron dysc - chr3L_4_13890001 chr3L_13890001 RAL-399 214 chr3L 14177794 14177807 chr3L 14177874 14177884 4 79 1.0 2.0 1.5 1.6 90 chr3L 14177794 5` UTR D - chr3L 14177839 5` UTR D - chr3L 14177884 5` UTR D - chr3L_4_14175001 chr3L_14175001 RAL-399 215 chr3L 14245569 14245592 chr3L 14245663 14245685 1360 4 94 2.0 2.0 2.0 1.3 116 chr3L 14245569 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-399 216 chr3L 14312024 14312035 chr3L 14316838 14316849 X-element 4 4814 2.5 0.0 1.2 1.8 4825 chr3L 14312024 exon fz + chr3L 14314436 intron fz + chr3L 14316849 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-399 217 chr3L 14522828 14522851 chr3L 14522906 14522920 6 76 1.0 1.0 1.0 3.0 92 chr3L 14522828 intron bbg - chr3L 14522874 intron bbg - chr3L 14522920 intron bbg - chr3L_6_14520001 chr3L_14520001 RAL-399 218 chr3L 15756880 15756898 chr3L 15756962 15756977 5 82 1.5 0.0 0.8 2.8 97 chr3L 15756880 intergenic not near genes chr3L 15756928 intergenic not near genes chr3L 15756977 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-399 219 chr3L 15899229 15899259 chr3L 15899791 15899826 jockey 6 566 1.0 1.5 1.2 2.7 597 chr3L 15899229 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899826 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-399 220 chr3L 16493975 16494012 chr3L 16494491 16494529 jockey 7 517 1.5 0.5 1.0 3.5 554 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-399 221 chr3L 16800580 16800608 chr3L 16800718 16800746 5 138 0.0 0.0 0.0 5.0 166 chr3L 16800580 intron CG9674 - chr3L 16800663 intron CG9674 - chr3L 16800746 intron CG9674 - chr3L_5_16800001 chr3L_16800001 RAL-399 222 chr3L 16945725 16945758 chr3L 16954878 16954911 roo 14 9152 2.5 1.5 2.0 4.7 9186 chr3L 16945725 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954911 5` UTR Nc73EF + chr3L_14_16950001 chr3L_16950001 RAL-399 223 chr3L 17026788 17026804 chr3L 17026869 17026883 4 80 0.0 0.5 0.2 3.3 95 chr3L 17026788 exon Fit2 + chr3L 17026836 3` UTR Fit2 + chr3L 17026883 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-399 224 chr3L 17510745 17510763 chr3L 17510829 17510847 4 84 0.5 0.5 0.5 2.7 102 chr3L 17510745 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510847 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-399 225 chr3L 18000679 18000708 chr3L 18000753 18000785 5 76 0.5 1.0 0.8 2.8 106 chr3L 18000679 intron Eip75B - chr3L 18000732 intron Eip75B - chr3L 18000785 intron Eip75B - chr3L_5_18000001 chr3L_18000001 RAL-399 226 chr3L 18318735 18318771 chr3L 18318820 18318856 4 85 1.0 1.0 1.0 2.0 121 chr3L 18318735 intergenic not near genes chr3L 18318796 intergenic not near genes chr3L 18318856 intergenic not near genes chr3L_4_18315001 chr3L_18315001 RAL-399 227 chr3L 18464488 18464514 chr3L 18464574 18464599 4 86 1.0 1.0 1.0 2.0 111 chr3L 18464488 intergenic not near genes chr3L 18464544 intergenic not near genes chr3L 18464599 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-399 228 chr3L 18538632 18538653 chr3L 18539125 18539145 5 492 1.0 0.5 0.8 2.8 513 chr3L 18538632 intergenic not near genes chr3L 18538888 intergenic not near genes chr3L 18539145 intergenic not near genes chr3L_5_18535001 chr3L_18535001 RAL-399 229 chr3L 18721787 18721802 chr3L 18721875 18721893 4 90 1.0 1.5 1.2 1.8 106 chr3L 18721787 intergenic CG12477 - chr3L 18721840 intergenic CG12477 - chr3L 18721893 3` UTR CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-399 230 chr3L 18868966 18868987 chr3L 18869047 18869067 4 81 0.0 0.5 0.2 3.3 101 chr3L 18868966 3` UTR Dysb + chr3L 18869016 3` UTR Dysb + chr3L 18869067 3` UTR Dysb + chr3L_4_18865001 chr3L_18865001 RAL-399 231 chr3L 18913807 18913815 chr3L 18913884 18913889 6 76 2.5 2.0 2.2 1.9 82 chr3L 18913807 exon CG14077 - chr3L 18913848 exon CG14077 - chr3L 18913889 exon CG14077 - chr3L_6_18910001 chr3L_18910001 RAL-399 232 chr3L 18941707 18941737 chr3L 18941800 18941829 5 92 1.0 1.5 1.2 2.3 122 chr3L 18941707 intron CG32204 - chr3L 18941768 intron CG32204 - chr3L 18941829 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-399 233 chr3L 19008851 19008869 chr3L 19009187 19009207 jockey 4 337 0.5 1.0 0.8 2.2 356 chr3L 19008851 intron nkd - chr3L 19009029 intron nkd - chr3L 19009207 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-399 234 chr3L 19117043 19117070 chr3L 19124488 19124517 mdg1 4 7446 2.0 0.5 1.2 1.8 7474 chr3L 19117043 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124517 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-399 235 chr3L 19135090 19135116 chr3L 19135242 19135268 6 152 1.5 0.0 0.8 3.3 178 chr3L 19135090 intron CG14082 - chr3L 19135179 intron CG14082 - chr3L 19135268 intron CG14082 - chr3L_6_19135001 chr3L_19135001 RAL-399 236 chr3L 19208063 19208077 chr3L 19209437 19209451 Doc 5 1374 1.5 1.0 1.2 2.3 1388 chr3L 19208063 intron fz2 - chr3L 19208757 intron fz2 - chr3L 19209451 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-399 237 chr3L 19262209 19262238 chr3L 19262291 19262320 4 82 0.5 0.5 0.5 2.7 111 chr3L 19262209 3` UTR Bet1 + chr3L 19262264 3` UTR,3` UTR Bet1 +,Max - chr3L 19262320 3` UTR,3` UTR Bet1 +,Max - chr3L_4_19260001 chr3L_19260001 RAL-399 238 chr3L 19269819 19269842 chr3L 19270023 19270045 6 204 2.5 1.5 2.0 2.0 226 chr3L 19269819 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270045 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-399 239 chr3L 19404988 19405008 chr3L 19405064 19405084 5 77 0.5 2.5 1.5 2.0 96 chr3L 19404988 intron CG32206 - chr3L 19405036 intron CG32206 - chr3L 19405084 intron CG32206 - chr3L_5_19405001 chr3L_19405001 RAL-399 240 chr3L 19417810 19417832 chr3L 19417889 19417912 5 80 1.0 2.0 1.5 2.0 102 chr3L 19417810 intergenic not near genes chr3L 19417861 intergenic not near genes chr3L 19417912 intergenic not near genes chr3L_5_19415001 chr3L_19415001 RAL-399 241 chr3L 20127922 20127931 chr3L 20127998 20128007 5 76 1.0 2.0 1.5 2.0 85 chr3L 20127922 intergenic not near genes chr3L 20127964 intergenic not near genes chr3L 20128007 intergenic not near genes chr3L_5_20125001 chr3L_20125001 RAL-399 242 chr3L 20257338 20257350 chr3L 20258458 20258470 pogo 4 1120 1.5 1.0 1.2 1.8 1132 chr3L 20257338 intron rdgC + chr3L 20257904 intron rdgC + chr3L 20258470 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-399 243 chr3L 20403592 20403604 chr3L 20403686 20403699 5 95 0.5 0.5 0.5 3.3 107 chr3L 20403592 intergenic not near genes chr3L 20403646 intergenic not near genes chr3L 20403699 intergenic not near genes chr3L_5_20400001 chr3L_20400001 RAL-399 244 chr3L 21082214 21082223 chr3L 21082292 21082301 4 78 1.0 1.0 1.0 2.0 87 chr3L 21082214 intron ko - chr3L 21082258 intron ko - chr3L 21082301 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-399 245 chr3L 21243746 21243769 chr3L 21251309 21251331 412 4 7563 0.0 0.0 0.0 4.0 7585 chr3L 21243746 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-399 246 chr3L 21406993 21407015 chr3L 21407072 21407094 4 79 0.0 0.0 0.0 4.0 101 chr3L 21406993 intron rgn + chr3L 21407044 intron rgn + chr3L 21407094 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-399 247 chr3L 21766932 21766953 chr3L 21767213 21767234 6 281 0.0 1.0 0.5 4.0 302 chr3L 21766932 intron Syn1 - chr3L 21767083 intron Syn1 - chr3L 21767234 intron Syn1 - chr3L_6_21765001 chr3L_21765001 RAL-399 248 chr3L 21788604 21788635 chr3L 21788689 21788720 6 85 1.0 0.5 0.8 3.3 116 chr3L 21788604 intergenic not near genes chr3L 21788662 intergenic not near genes chr3L 21788720 intergenic not near genes chr3L_6_21785001 chr3L_21785001 RAL-399 249 chr3L 22351135 22351168 chr3L 22351231 22351263 4 96 2.0 0.5 1.2 1.8 128 chr3L 22351135 intron Ten-m - chr3L 22351199 intron Ten-m - chr3L 22351263 intron Ten-m - chr3L_4_22350001 chr3L_22350001 RAL-399 250 chr3L 22617196 22617213 chr3L 22624648 22624665 blood 4 7451 3.0 1.0 2.0 1.3 7469 chr3L 22617196 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624665 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-399 251 chr3L 22673794 22673816 chr3L 22673906 22673928 4 112 0.0 1.5 0.8 2.2 134 chr3L 22673794 intron CG14457 + chr3L 22673861 intron CG14457 + chr3L 22673928 intron CG14457 + chr3L_4_22670001 chr3L_22670001 RAL-399 252 chr3L 22761395 22761420 chr3L 22766829 22766854 Ivk 5 5434 0.5 0.0 0.2 4.2 5459 chr3L 22761395 intron SPoCk + chr3L 22764124 intron SPoCk + chr3L 22766854 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-399 253 chr3L 22786068 22786095 chr3L 22788506 22788532 8 2437 9.0 10.0 9.5 0.8 2464 chr3L 22786068 3` UTR SPoCk + chr3L 22787300 3` UTR SPoCk + chr3L 22788532 exon CG14448 + chr3L_8_22785001 chr3L_22785001 RAL-399 254 chr3L 22853476 22853705 chr3L 22853563 22853791 5 86 2.0 1.5 1.8 1.8 315 chr3L 22853476 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853791 5` UTR CR43426 + chr3L_5_22850001 chr3L_22850001 RAL-399 255 chr3L 22912775 22912792 chr3L 22912856 22912873 5 81 0.0 0.5 0.2 4.2 98 chr3L 22912775 intron CG12768 + chr3L 22912824 intron CG12768 + chr3L 22912873 intron CG12768 + chr3L_5_22910001 chr3L_22910001 RAL-399 256 chr3L 22920941 22920955 chr3L 22921029 22921043 4 88 2.5 3.0 2.8 1.1 102 chr3L 22920941 intron CG12768 + chr3L 22920992 intron CG12768 + chr3L 22921043 intron CG12768 + chr3L_4_22920001 chr3L_22920001 RAL-399 257 chr3L 22955399 22955418 chr3L 22956692 22956711 INE-1 4 1293 0.5 1.5 1.0 2.0 1312 chr3L 22955399 intergenic CG32461 - chr3L 22956055 intergenic not near genes chr3L 22956711 intergenic not near genes chr3L_4_22955001 chr3L_22955001 RAL-399 258 chr3L 23909127 23909153 chr3L 23912278 23912303 G3 5 3150 6.0 5.0 5.5 0.8 3176 chr3L 23909127 intron,5` UTR CG40470 -,CR43942 + chr3L 23910715 intron CG40470 - chr3L 23912303 exon CG40470 - chr3L_5_23910001 chr3L_23910001 RAL-399 259 chr3L 24040669 24040694 chr3L 24040802 24040827 6 133 1.0 0.5 0.8 3.3 158 chr3L 24040669 intergenic not near genes chr3L 24040748 intergenic not near genes chr3L 24040827 intergenic not near genes chr3L_6_24040001 chr3L_24040001 RAL-399 260 chr3L 24363243 24363267 chr3L 24363319 24363345 5 78 1.0 1.5 1.2 2.3 102 chr3L 24363243 intron nvd + chr3L 24363294 intron nvd + chr3L 24363345 intron nvd + chr3L_5_24360001 chr3L_24360001 RAL-399 261 chr3R 2984936 2984961 chr3R 2985012 2985037 7 75 0.0 0.0 0.0 7.0 101 chr3R 2984936 intron CG42618 - chr3R 2984986 intron CG42618 - chr3R 2985037 intron CG42618 - chr3R_7_2980001 chr3R_2980001 RAL-399 262 chr3R 4366763 4366790 chr3R 4375146 4375173 roo 4 8383 1.0 2.5 1.8 1.4 8410 chr3R 4366763 3` UTR CG1090 + chr3R 4370968 intergenic not near genes chr3R 4375173 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-399 263 chr3R 4609546 4609579 chr3R 4610710 4610743 1360 5 1164 0.5 0.5 0.5 3.3 1197 chr3R 4609546 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-399 264 chr3R 4753249 4753259 chr3R 4757552 4757562 F-element 5 4303 2.5 2.0 2.2 1.6 4313 chr3R 4753249 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757562 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-399 265 chr3R 4759722 4759745 chr3R 4761219 4761242 hopper2 4 1496 2.5 4.0 3.2 1.0 1520 chr3R 4759722 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761242 intron,intron atms +,CG44098 - chr3R_4_4760001 chr3R_4760001 RAL-399 266 chr3R 4861574 4861588 chr3R 4861655 4861668 4 81 1.0 0.5 0.8 2.2 94 chr3R 4861574 intron opa + chr3R 4861621 intron opa + chr3R 4861668 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-399 267 chr3R 4887493 4887512 chr3R 4894868 4894889 rover 4 7376 0.0 0.5 0.2 3.3 7396 chr3R 4887493 intergenic not near genes chr3R 4891191 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-399 268 chr3R 5626431 5626455 chr3R 5626732 5626756 4 301 1.0 0.5 0.8 2.2 325 chr3R 5626431 intergenic RpL13A + chr3R 5626594 intergenic not near genes chr3R 5626756 intergenic not near genes chr3R_4_5625001 chr3R_5625001 RAL-399 269 chr3R 5735578 5735584 chr3R 5737000 5737009 5 1423 11.0 9.0 10.0 0.5 1431 chr3R 5735578 exon CG2100 - chr3R 5736294 5` UTR CG2100 - chr3R 5737009 exon CG1236 + chr3R_5_5735001 chr3R_5735001 RAL-399 270 chr3R 5747016 5747047 chr3R 5753207 5753238 diver 5 6191 1.5 1.5 1.5 2.0 6222 chr3R 5747016 intergenic Madm + chr3R 5750127 intergenic not near genes chr3R 5753238 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-399 271 chr3R 5809118 5809125 chr3R 5809359 5809366 pogo 4 241 3.0 1.0 2.0 1.3 248 chr3R 5809118 3` UTR CG11000 + chr3R 5809242 3` UTR CG11000 + chr3R 5809366 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-399 272 chr3R 5927561 5927584 chr3R 5927801 5927824 pogo 4 238 1.0 0.5 0.8 2.2 263 chr3R 5927561 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-399 273 chr3R 6015960 6015988 chr3R 6024441 6024469 Tirant 5 8480 1.5 3.5 2.5 1.4 8509 chr3R 6015960 intergenic not near genes chr3R 6020214 intergenic not near genes chr3R 6024469 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-399 274 chr3R 6158082 6158106 chr3R 6158296 6158318 4 214 0.5 1.5 1.0 2.0 236 chr3R 6158082 intergenic not near genes chr3R 6158200 intergenic not near genes chr3R 6158318 intergenic not near genes chr3R_4_6155001 chr3R_6155001 RAL-399 275 chr3R 6206292 6206318 chr3R 6206509 6206535 BS 6 217 1.0 1.5 1.2 2.7 243 chr3R 6206292 exon Osi24 + chr3R 6206414 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_6_6205001 chr3R_6205001 RAL-399 276 chr3R 6334790 6334812 chr3R 6334888 6334910 4 98 0.5 0.0 0.2 3.3 120 chr3R 6334790 intergenic not near genes chr3R 6334850 intergenic not near genes chr3R 6334910 intergenic Osi19 + chr3R_4_6330001 chr3R_6330001 RAL-399 277 chr3R 6510026 6510051 chr3R 6515107 6515132 jockey 4 5081 0.0 1.0 0.5 2.7 5106 chr3R 6510026 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515132 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-399 278 chr3R 6737505 6737526 chr3R 6739292 6739313 Doc 4 1787 0.5 0.5 0.5 2.7 1808 chr3R 6737505 intron pb - chr3R 6738409 intron pb - chr3R 6739313 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-399 279 chr3R 6862223 6862251 chr3R 6862310 6862338 4 87 0.5 0.5 0.5 2.7 115 chr3R 6862223 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862338 intergenic not near genes chr3R_4_6860001 chr3R_6860001 RAL-399 280 chr3R 7677914 7677940 chr3R 7678027 7678053 4 112 0.5 0.0 0.2 3.3 139 chr3R 7677914 intron Nlg1 + chr3R 7677984 intron Nlg1 + chr3R 7678053 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-399 281 chr3R 7680853 7680870 chr3R 7681484 7681501 4 630 0.5 1.0 0.8 2.2 648 chr3R 7680853 intron Nlg1 + chr3R 7681177 intron Nlg1 + chr3R 7681501 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-399 282 chr3R 7684435 7684453 chr3R 7686353 7686371 5 1918 2.5 1.0 1.8 1.8 1936 chr3R 7684435 intron Nlg1 + chr3R 7685403 intron Nlg1 + chr3R 7686371 intron Nlg1 + chr3R_5_7685001 chr3R_7685001 RAL-399 283 chr3R 7729473 7729495 chr3R 7737411 7737432 Stalker2 6 7938 2.0 2.5 2.2 1.9 7959 chr3R 7729473 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737432 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-399 284 chr3R 8056153 8056182 chr3R 8056303 8056332 6 150 0.0 3.5 1.8 2.1 179 chr3R 8056153 intergenic CG43060 + chr3R 8056242 intergenic CG43060 + chr3R 8056332 intergenic CG43060 + chr3R_6_8055001 chr3R_8055001 RAL-399 285 chr3R 8094411 8094434 chr3R 8099716 8099739 Transpac 4 5305 1.0 1.5 1.2 1.8 5328 chr3R 8094411 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099739 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-399 286 chr3R 8182655 8182678 chr3R 8182748 8182771 4 93 0.0 1.0 0.5 2.7 116 chr3R 8182655 intergenic not near genes chr3R 8182713 intergenic not near genes chr3R 8182771 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-399 287 chr3R 8293995 8294007 chr3R 8294173 8294185 5 178 1.0 2.0 1.5 2.0 190 chr3R 8293995 3` UTR CG9626 - chr3R 8294090 3` UTR CG9626 - chr3R 8294185 3` UTR CG9626 - chr3R_5_8290001 chr3R_8290001 RAL-399 288 chr3R 8339241 8339247 chr3R 21907534 21907536 8 13568290 7.5 10.0 8.8 0.8 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-399 289 chr3R 8393588 8393603 chr3R 8393671 8393687 5 83 0.0 1.5 0.8 2.8 99 chr3R 8393588 intron CG45263 - chr3R 8393638 intron CG45263 - chr3R 8393687 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-399 290 chr3R 8541338 8541367 chr3R 8541419 8541448 6 81 1.0 1.5 1.2 2.7 110 chr3R 8541338 intergenic not near genes chr3R 8541393 intergenic not near genes chr3R 8541448 intergenic not near genes chr3R_6_8540001 chr3R_8540001 RAL-399 291 chr3R 8570485 8570506 chr3R 8575121 8575142 HMS-Beagle 5 4636 2.5 1.0 1.8 1.8 4657 chr3R 8570485 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575142 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-399 292 chr3R 8575941 8575949 chr3R 8576023 8576032 4 83 0.5 1.0 0.8 2.2 91 chr3R 8575941 intergenic not near genes chr3R 8575986 intergenic not near genes chr3R 8576032 intergenic not near genes chr3R_4_8575001 chr3R_8575001 RAL-399 293 chr3R 8578036 8578063 chr3R 8578119 8578146 4 82 2.0 1.0 1.5 1.6 110 chr3R 8578036 intergenic 5-HT2B + chr3R 8578091 intergenic 5-HT2B + chr3R 8578146 intergenic 5-HT2B + chr3R_4_8575001 chr3R_8575001 RAL-399 294 chr3R 9120572 9120578 chr3R 21907534 21907535 6 12786958 3.0 10.0 6.5 0.8 12786963 chr3R 9120572 intron pum - chr3R 15514054 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15510001 chr3R_15510001 RAL-399 295 chr3R 9434706 9434719 chr3R 9434791 9434806 4 86 0.5 1.0 0.8 2.2 100 chr3R 9434706 intron ps + chr3R 9434756 intron ps + chr3R 9434806 intron ps + chr3R_4_9430001 chr3R_9430001 RAL-399 296 chr3R 10401899 10401919 chr3R 10402089 10402109 4 190 1.5 0.5 1.0 2.0 210 chr3R 10401899 exon mthl11 + chr3R 10402004 intron mthl11 + chr3R 10402109 exon mthl11 + chr3R_4_10400001 chr3R_10400001 RAL-399 297 chr3R 10641596 10641617 chr3R 10641676 10641697 4 80 1.5 1.5 1.5 1.6 101 chr3R 10641596 5` UTR CR44018 + chr3R 10641646 5` UTR CR44018 + chr3R 10641697 5` UTR CR44018 + chr3R_4_10640001 chr3R_10640001 RAL-399 298 chr3R 10718270 10718301 chr3R 10718347 10718378 7 77 0.5 1.0 0.8 3.9 108 chr3R 10718270 intergenic not near genes chr3R 10718324 intergenic not near genes chr3R 10718378 intergenic not near genes chr3R_7_10715001 chr3R_10715001 RAL-399 299 chr3R 10919686 10919709 chr3R 10919764 10919787 4 78 0.5 0.0 0.2 3.3 101 chr3R 10919686 intergenic not near genes chr3R 10919736 intergenic not near genes chr3R 10919787 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-399 300 chr3R 10984379 10984409 chr3R 10984487 10984518 4 108 1.0 2.0 1.5 1.6 139 chr3R 10984379 intron CG34114 + chr3R 10984448 intron CG34114 + chr3R 10984518 intron CG34114 + chr3R_4_10980001 chr3R_10980001 RAL-399 301 chr3R 11102692 11102709 chr3R 11102779 11102798 4 88 2.0 0.5 1.2 1.8 106 chr3R 11102692 intergenic not near genes chr3R 11102745 intergenic not near genes chr3R 11102798 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-399 302 chr3R 11461281 11461293 chr3R 11461361 11461371 4 80 2.5 2.0 2.2 1.2 90 chr3R 11461281 intron CG17230 + chr3R 11461326 intron CG17230 + chr3R 11461371 intron CG17230 + chr3R_4_11460001 chr3R_11460001 RAL-399 303 chr3R 11710207 11710235 chr3R 11710285 11710313 6 78 0.0 1.0 0.5 4.0 106 chr3R 11710207 intergenic not near genes chr3R 11710260 intergenic not near genes chr3R 11710313 intergenic not near genes chr3R_6_11710001 chr3R_11710001 RAL-399 304 chr3R 11734172 11734185 chr3R 11734290 11734304 4 118 2.0 1.5 1.8 1.4 132 chr3R 11734172 intergenic not near genes chr3R 11734238 intergenic not near genes chr3R 11734304 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-399 305 chr3R 11834172 11834194 chr3R 11834255 11834277 7 83 0.5 1.0 0.8 3.9 105 chr3R 11834172 intron CG6959 - chr3R 11834224 intron CG6959 - chr3R 11834277 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-399 306 chr3R 12247150 12247164 chr3R 12247235 12247249 5 85 0.5 1.0 0.8 2.8 99 chr3R 12247150 intergenic not near genes chr3R 12247200 intergenic not near genes chr3R 12247249 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-399 307 chr3R 12965035 12965060 chr3R 12965203 12965227 6 167 2.0 2.0 2.0 2.0 192 chr3R 12965035 intron,exon grsm -,Cyp304a1 + chr3R 12965131 intron,exon grsm -,Cyp304a1 + chr3R 12965227 intron,exon grsm -,Cyp304a1 + chr3R_6_12965001 chr3R_12965001 RAL-399 308 chr3R 13349053 13349078 chr3R 13349139 13349164 4 86 0.0 1.0 0.5 2.7 111 chr3R 13349053 intergenic not near genes chr3R 13349108 intergenic not near genes chr3R 13349164 intergenic not near genes chr3R_4_13345001 chr3R_13345001 RAL-399 309 chr3R 13496165 13496193 chr3R 13496248 13496274 5 82 0.0 1.0 0.5 3.3 109 chr3R 13496165 intergenic not near genes chr3R 13496220 intergenic not near genes chr3R 13496274 intergenic not near genes chr3R_5_13495001 chr3R_13495001 RAL-399 310 chr3R 13603061 13603072 chr3R 13603152 13603163 4 91 0.5 0.5 0.5 2.7 102 chr3R 13603061 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603163 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-399 311 chr3R 14497403 14497438 chr3R 14497483 14497519 6 81 0.5 0.0 0.2 5.0 116 chr3R 14497403 intron CR44177 + chr3R 14497461 intron CR44177 + chr3R 14497519 intron CR44177 + chr3R_6_14495001 chr3R_14495001 RAL-399 312 chr3R 15180911 15180925 chr3R 15180996 15181011 4 86 1.0 0.0 0.5 2.7 100 chr3R 15180911 intron Gyc88E + chr3R 15180961 intron Gyc88E + chr3R 15181011 intron Gyc88E + chr3R_4_15180001 chr3R_15180001 RAL-399 313 chr3R 15406135 15406165 chr3R 15406215 15406245 5 81 0.0 0.5 0.2 4.2 110 chr3R 15406135 intron CG6125 - chr3R 15406190 intron CG6125 - chr3R 15406245 intron CG6125 - chr3R_5_15405001 chr3R_15405001 RAL-399 314 chr3R 15601164 15601194 chr3R 15608686 15608716 412 6 7522 0.5 1.5 1.0 3.0 7552 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-399 315 chr3R 15618739 15618762 chr3R 15626212 15626236 blood 5 7474 1.5 1.0 1.2 2.3 7497 chr3R 15618739 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626236 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-399 316 chr3R 15813323 15813357 chr3R 15813408 15813442 5 85 1.0 0.5 0.8 2.8 119 chr3R 15813323 intron alpha-Man-IIb + chr3R 15813382 intron alpha-Man-IIb + chr3R 15813442 intron alpha-Man-IIb + chr3R_5_15810001 chr3R_15810001 RAL-399 317 chr3R 16756324 16756349 chr3R 16762515 16762536 diver 5 6190 2.0 1.0 1.5 2.0 6212 chr3R 16756324 intron bxd - chr3R 16759430 intron bxd - chr3R 16762536 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-399 318 chr3R 17342890 17342924 chr3R 17342974 17343005 5 83 0.0 0.5 0.2 4.2 115 chr3R 17342890 intron beat-IIa - chr3R 17342948 intron beat-IIa - chr3R 17343005 intron beat-IIa - chr3R_5_17340001 chr3R_17340001 RAL-399 319 chr3R 17382710 17382742 chr3R 17382787 17382819 5 77 1.0 1.0 1.0 2.5 109 chr3R 17382710 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R 17382764 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R 17382819 intron,intron Brf -,lute + chr3R_5_17380001 chr3R_17380001 RAL-399 320 chr3R 17461198 17461227 chr3R 17461280 17461309 4 82 0.0 0.5 0.2 3.3 111 chr3R 17461198 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461309 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-399 321 chr3R 18235211 18235240 chr3R 18235387 18235416 5 176 0.0 0.5 0.2 4.2 205 chr3R 18235211 intergenic not near genes chr3R 18235314 intergenic not near genes chr3R 18235416 intergenic not near genes chr3R_5_18235001 chr3R_18235001 RAL-399 322 chr3R 18501596 18501616 chr3R 18501677 18501697 5 81 1.5 2.0 1.8 1.8 101 chr3R 18501596 intron fru - chr3R 18501646 intron fru - chr3R 18501697 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-399 323 chr3R 18606502 18606533 chr3R 18610734 18610765 F-element 4 4232 0.5 0.0 0.2 3.3 4263 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610765 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-399 324 chr3R 18637515 18637545 chr3R 18637617 18637646 4 102 2.0 0.5 1.2 1.8 131 chr3R 18637515 intron,intron qin +,CG14301 - chr3R 18637580 intron,intron qin +,CG14301 - chr3R 18637646 intron,intron qin +,CG14301 - chr3R_4_18635001 chr3R_18635001 RAL-399 325 chr3R 18885940 18885957 chr3R 18886020 18886038 4 80 0.5 0.0 0.2 3.3 98 chr3R 18885940 intergenic not near genes chr3R 18885989 intergenic not near genes chr3R 18886038 intergenic not near genes chr3R_4_18885001 chr3R_18885001 RAL-399 326 chr3R 19136411 19136420 chr3R 19139799 19139809 Bari1 4 3387 21.5 3.5 12.5 0.3 3398 chr3R 19136411 exon Cyp12a4 + chr3R 19138110 intergenic not near genes chr3R 19139809 3` UTR Ppcs - chr3R_4_19135001 chr3R_19135001 RAL-399 327 chr3R 19248873 19248894 chr3R 19248953 19248974 4 80 0.5 0.0 0.2 3.3 101 chr3R 19248873 intergenic not near genes chr3R 19248924 intergenic not near genes chr3R 19248974 intergenic not near genes chr3R_4_19245001 chr3R_19245001 RAL-399 328 chr3R 19602767 19602793 chr3R 19602845 19602871 4 78 1.0 0.5 0.8 2.2 104 chr3R 19602767 intergenic CG7333 + chr3R 19602819 intergenic CG7333 + chr3R 19602871 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-399 329 chr3R 19633298 19633321 chr3R 19633383 19633407 4 86 0.0 0.0 0.0 4.0 109 chr3R 19633298 intergenic subdued - chr3R 19633352 intergenic subdued - chr3R 19633407 intergenic subdued - chr3R_4_19630001 chr3R_19630001 RAL-399 330 chr3R 19953952 19953973 chr3R 19954029 19954050 4 77 0.5 1.5 1.0 2.0 98 chr3R 19953952 intron Hs6st - chr3R 19954001 intron Hs6st - chr3R 19954050 intron Hs6st - chr3R_4_19950001 chr3R_19950001 RAL-399 331 chr3R 20266516 20266545 chr3R 20272987 20273016 Burdock 4 6471 0.0 0.5 0.2 3.3 6500 chr3R 20266516 intron cic + chr3R 20269766 intron cic + chr3R 20273016 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-399 332 chr3R 20467076 20467115 chr3R 20467152 20467191 4 76 1.5 1.0 1.2 1.8 115 chr3R 20467076 intron Gfrl - chr3R 20467134 intron Gfrl - chr3R 20467191 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-399 333 chr3R 20506597 20506616 chr3R 20507400 20507419 BS 4 803 0.0 1.0 0.5 2.7 822 chr3R 20506597 intergenic Or92a + chr3R 20507008 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-399 334 chr3R 20555509 20555543 chr3R 20555818 20555852 5 309 1.0 0.5 0.8 2.8 343 chr3R 20555509 intron att-ORFA - chr3R 20555680 intron att-ORFA - chr3R 20555852 intron att-ORFA - chr3R_5_20555001 chr3R_20555001 RAL-399 335 chr3R 13104419 13104420 chr3R 21907534 21907534 5 8803114 9.0 10.0 9.5 0.5 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-399 336 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 2.5 10.0 6.2 0.6 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-399 337 chr3R 21337428 21337431 chr3R 21907534 21907534 13 570105 0.5 10.0 5.2 2.1 570106 chr3R 21337428 intron CG16791 - chr3R 21622481 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_13_21620001 chr3R_21620001 RAL-399 338 chr3R 21907534 21907534 chr3R 28831802 28831802 10 6924268 9.0 4.5 6.8 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-399 339 chr3R 9620953 9620956 chr3R 21907535 21907535 4 12286580 5.0 9.5 7.2 0.5 12286582 chr3R 9620953 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-399 340 chr3R 13104419 13104420 chr3R 21907535 21907535 6 8803115 9.0 9.5 9.2 0.6 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_6_17505001 chr3R_17505001 RAL-399 341 chr3R 19457915 19457919 chr3R 21907535 21907535 6 2449619 4.0 9.5 6.8 0.8 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_20680001 chr3R_20680001 RAL-399 342 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 2.5 9.5 6.0 0.6 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-399 343 chr3R 21907535 21907535 chr3R 28831801 28831802 41 6924266 9.0 4.5 6.8 5.3 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_41_25365001 chr3R_25365001 RAL-399 344 chr3R 19457915 19457916 chr3R 21907536 21907536 4 2449621 4.5 9.5 7.0 0.5 2449621 chr3R 19457915 3` UTR CG31221 + chr3R 20682726 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-399 345 chr3R 21907536 21907536 chr3R 27586204 27586204 4 5678668 9.0 3.5 6.2 0.6 5678668 chr3R 21907536 intergenic CG6678 + chr3R 24746870 exon tok + chr3R 27586204 3` UTR raps + chr3R_4_24745001 chr3R_24745001 RAL-399 346 chr3R 21907536 21907536 chr3R 28831801 28831802 32 6924266 9.0 4.5 6.8 4.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-399 347 chr3R 21907536 21907536 chr3R 29013340 29013340 5 7105804 9.0 7.0 8.0 0.6 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-399 348 chr3R 21983137 21983159 chr3R 21983218 21983240 5 81 1.5 0.5 1.0 2.5 103 chr3R 21983137 intron Eip93F + chr3R 21983188 intron Eip93F + chr3R 21983240 intron Eip93F + chr3R_5_21980001 chr3R_21980001 RAL-399 349 chr3R 22797765 22797928 chr3R 22797851 22798024 6 91 0.0 0.0 0.0 6.0 259 chr3R 22797765 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798024 intergenic not near genes chr3R_6_22795001 chr3R_22795001 RAL-399 350 chr3R 23100153 23100441 chr3R 23100240 23100521 5 84 1.5 0.0 0.8 2.8 368 chr3R 23100153 intron,exon CG13830 -,CG6738 + chr3R 23100337 intron,exon CG13830 -,CG6738 + chr3R 23100521 intron,exon CG13830 -,CG6738 + chr3R_5_23100001 chr3R_23100001 RAL-399 351 chr3R 23684699 23684730 chr3R 23685185 23685216 roo 5 485 0.5 1.0 0.8 2.8 517 chr3R 23684699 exon CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685216 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-399 352 chr3R 23729297 23729321 chr3R 23729378 23729402 4 80 0.5 0.0 0.2 3.3 105 chr3R 23729297 intron CG10365 + chr3R 23729350 intron CG10365 + chr3R 23729402 intron CG10365 + chr3R_4_23725001 chr3R_23725001 RAL-399 353 chr3R 23944921 23944933 chr3R 23945006 23945017 4 85 0.5 2.5 1.5 1.6 96 chr3R 23944921 intron CG12268 - chr3R 23944969 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-399 354 chr3R 24072085 24072097 chr3R 24072521 24072535 jockey 4 438 1.0 1.0 1.0 2.0 450 chr3R 24072085 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072535 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-399 355 chr3R 24074395 24074422 chr3R 24074483 24074510 5 88 1.5 1.0 1.2 2.3 115 chr3R 24074395 intron 4EHP - chr3R 24074452 intron 4EHP - chr3R 24074510 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-399 356 chr3R 21907535 21907535 chr3R 24389465 24389465 4 2481930 9.0 3.5 6.2 0.6 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-399 357 chr3R 24842102 24842137 chr3R 24842188 24842223 4 86 0.5 1.0 0.8 2.2 121 chr3R 24842102 5` UTR Esp + chr3R 24842162 5` UTR Esp + chr3R 24842223 5` UTR Esp + chr3R_4_24840001 chr3R_24840001 RAL-399 358 chr3R 24927138 24927155 chr3R 24931929 24931943 Doc 7 4791 1.5 1.0 1.2 3.2 4805 chr3R 24927138 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-399 359 chr3R 25235698 25235725 chr3R 25235788 25235815 4 90 0.0 0.0 0.0 4.0 117 chr3R 25235698 intergenic CG10420 - chr3R 25235756 intergenic CG10420 - chr3R 25235815 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-399 360 chr3R 25368480 25368501 chr3R 25368598 25368619 4 118 0.0 0.0 0.0 4.0 139 chr3R 25368480 intron Fur1 - chr3R 25368550 intron Fur1 - chr3R 25368619 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-399 361 chr3R 25642597 25642610 chr3R 25642688 25642701 5 91 0.0 2.5 1.2 2.3 104 chr3R 25642597 intron jigr1 + chr3R 25642649 intron jigr1 + chr3R 25642701 intron jigr1 + chr3R_5_25640001 chr3R_25640001 RAL-399 362 chr3R 25652314 25652342 chr3R 25652391 25652419 4 77 0.5 0.5 0.5 2.7 105 chr3R 25652314 intergenic not near genes chr3R 25652366 intergenic not near genes chr3R 25652419 intergenic not near genes chr3R_4_25650001 chr3R_25650001 RAL-399 363 chr3R 25669064 25669094 chr3R 25669157 25669188 5 94 1.0 0.0 0.5 3.3 124 chr3R 25669064 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669188 intron Lgr3 + chr3R_5_25665001 chr3R_25665001 RAL-399 364 chr3R 25775034 25775052 chr3R 25775117 25775136 5 84 0.0 1.5 0.8 2.8 102 chr3R 25775034 exon,5` UTR CG17197 -,CG17198 - chr3R 25775085 exon,5` UTR CG17197 -,CG17198 - chr3R 25775136 exon,5` UTR CG17197 -,CG17198 - chr3R_5_25775001 chr3R_25775001 RAL-399 365 chr3R 25832700 25832717 chr3R 25841882 25841899 roo 5 9182 1.0 0.5 0.8 2.8 9199 chr3R 25832700 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-399 366 chr3R 26021020 26021049 chr3R 26021100 26021129 9 78 1.5 0.0 0.8 5.0 109 chr3R 26021020 3` UTR CR43644 - chr3R 26021074 3` UTR CR43644 - chr3R 26021129 intergenic CR43644 - chr3R_9_26020001 chr3R_26020001 RAL-399 367 chr3R 26060404 26060436 chr3R 26060490 26060522 4 86 1.5 1.0 1.2 1.8 118 chr3R 26060404 intron CG14544 + chr3R 26060463 intron CG14544 + chr3R 26060522 intron CG14544 + chr3R_4_26060001 chr3R_26060001 RAL-399 368 chr3R 26294716 26294737 chr3R 26294793 26294814 5 77 2.0 1.0 1.5 2.0 98 chr3R 26294716 intergenic not near genes chr3R 26294765 intergenic not near genes chr3R 26294814 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-399 369 chr3R 26835475 26835485 chr3R 26835555 26835566 5 80 1.0 0.0 0.5 3.3 91 chr3R 26835475 intron Tl + chr3R 26835520 intron Tl + chr3R 26835566 intron Tl + chr3R_5_26835001 chr3R_26835001 RAL-399 370 chr3R 26885685 26885719 chr3R 26885785 26885819 4 100 1.0 1.0 1.0 2.0 134 chr3R 26885685 intron T48 + chr3R 26885752 intron T48 + chr3R 26885819 intron T48 + chr3R_4_26885001 chr3R_26885001 RAL-399 371 chr3R 27077101 27077130 chr3R 27077181 27077210 5 80 0.5 1.5 1.0 2.5 109 chr3R 27077101 intron CG14257 + chr3R 27077156 intron CG14257 + chr3R 27077210 intron CG14257 + chr3R_5_27075001 chr3R_27075001 RAL-399 372 chr3R 27342801 27342824 chr3R 27351382 27351405 Tirant 4 8581 0.0 0.5 0.2 3.3 8604 chr3R 27342801 intron CG42534 + chr3R 27347103 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-399 373 chr3R 27492379 27492393 chr3R 27492466 27492480 4 87 0.5 0.5 0.5 2.7 101 chr3R 27492379 intergenic not near genes chr3R 27492430 intergenic not near genes chr3R 27492480 intergenic not near genes chr3R_4_27490001 chr3R_27490001 RAL-399 374 chr3R 27511246 27511269 chr3R 27511333 27511356 4 87 1.5 0.0 0.8 2.2 110 chr3R 27511246 intergenic not near genes chr3R 27511301 intergenic not near genes chr3R 27511356 intergenic not near genes chr3R_4_27510001 chr3R_27510001 RAL-399 375 chr3R 27705356 27705382 chr3R 27705436 27705462 6 80 0.5 0.0 0.2 5.0 106 chr3R 27705356 exon CG12428 - chr3R 27705409 intron CG12428 - chr3R 27705462 intron CG12428 - chr3R_6_27705001 chr3R_27705001 RAL-399 376 chr3R 27759295 27759329 chr3R 27759372 27759406 4 77 0.0 1.0 0.5 2.7 111 chr3R 27759295 intergenic not near genes chr3R 27759350 intergenic not near genes chr3R 27759406 intergenic not near genes chr3R_4_27755001 chr3R_27755001 RAL-399 377 chr3R 27856763 27856790 chr3R 27858246 27858273 hopper2 5 1483 1.0 1.5 1.2 2.3 1510 chr3R 27856763 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858273 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-399 378 chr3R 27871079 27871085 chr3R 27871180 27871186 4 101 0.5 0.5 0.5 2.7 107 chr3R 27871079 intron CG34353 - chr3R 27871132 intron CG34353 - chr3R 27871186 intron CG34353 - chr3R_4_27870001 chr3R_27870001 RAL-399 379 chr3R 27875698 27875733 chr3R 27882753 27882788 297 5 7055 1.0 1.0 1.0 2.5 7090 chr3R 27875698 intron CG34353 - chr3R 27879243 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-399 380 chr3R 27973858 27973873 chr3R 27973939 27973954 4 81 0.5 1.0 0.8 2.2 96 chr3R 27973858 intron betaTub97EF - chr3R 27973906 intron betaTub97EF - chr3R 27973954 intron betaTub97EF - chr3R_4_27970001 chr3R_27970001 RAL-399 381 chr3R 28173680 28173699 chr3R 28181110 28181129 mdg1 4 7430 1.0 1.0 1.0 2.0 7449 chr3R 28173680 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181129 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-399 382 chr3R 28215817 28215836 chr3R 28215894 28215913 5 77 2.5 2.0 2.2 1.6 96 chr3R 28215817 intron CG34354 + chr3R 28215865 intron CG34354 + chr3R 28215913 intron CG34354 + chr3R_5_28215001 chr3R_28215001 RAL-399 383 chr3R 28282991 28283018 chr3R 28283620 28283647 4 629 2.0 4.0 3.0 1.0 656 chr3R 28282991 exon CG34436 + chr3R 28283319 exon CG34436 + chr3R 28283647 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-399 384 chr3R 28367473 28367493 chr3R 28367551 28367570 4 77 1.0 0.5 0.8 2.2 97 chr3R 28367473 intergenic not near genes chr3R 28367522 intergenic not near genes chr3R 28367570 intergenic not near genes chr3R_4_28365001 chr3R_28365001 RAL-399 385 chr3R 28407706 28407737 chr3R 28407792 28407822 7 86 1.0 0.5 0.8 3.9 116 chr3R 28407706 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407822 intergenic not near genes chr3R_7_28405001 chr3R_28405001 RAL-399 386 chr3R 28484357 28484375 chr3R 28486274 28486292 7 1917 8.5 12.5 10.5 0.6 1935 chr3R 28484357 intergenic CG1894 + chr3R 28485324 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_7_28485001 chr3R_28485001 RAL-399 387 chr3R 28527675 28527688 chr3R 28527752 28527765 4 76 10.5 12.5 11.5 0.3 90 chr3R 28527675 exon Ppn - chr3R 28527720 exon Ppn - chr3R 28527765 exon Ppn - chr3R_4_28525001 chr3R_28525001 RAL-399 388 chr3R 28717014 28717028 chr3R 28717095 28717109 4 81 1.5 0.5 1.0 2.0 95 chr3R 28717014 intron htt + chr3R 28717062 intron htt + chr3R 28717109 intron htt + chr3R_4_28715001 chr3R_28715001 RAL-399 389 chr3R 21907535 21907535 chr3R 28831798 28831798 4 6924263 9.0 5.0 7.0 0.5 6924263 chr3R 21907535 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831798 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-399 390 chr3R 21907534 21907536 chr3R 28831799 28831801 35 6924266 9.0 5.0 7.0 4.4 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-399 391 chr3R 21907534 21907536 chr3R 28831802 28831802 26 6924267 9.0 4.5 6.8 3.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-399 392 chr3R 21907534 21907535 chr3R 29013340 29013340 5 7105806 9.0 7.0 8.0 0.6 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-399 393 chr3R 29183127 29183140 chr3R 29183206 29183218 4 79 0.5 0.5 0.5 2.7 91 chr3R 29183127 intron CG14509 - chr3R 29183172 intron CG14509 - chr3R 29183218 intron CG14509 - chr3R_4_29180001 chr3R_29180001 RAL-399 394 chr3R 29472008 29472037 chr3R 29472101 29472130 4 93 0.0 0.5 0.2 3.3 122 chr3R 29472008 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472130 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-399 395 chr3R 29882028 29882051 chr3R 29891184 29891208 roo 5 9156 0.5 1.5 1.0 2.5 9180 chr3R 29882028 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-399 396 chr3R 30317332 30317356 chr3R 30324924 30324946 roo 4 7591 0.0 1.0 0.5 2.7 7614 chr3R 30317332 intron hdc + chr3R 30321139 intron hdc + chr3R 30324946 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-399 397 chr3R 30396228 30396244 chr3R 30404494 30404510 roo 4 8266 0.5 0.5 0.5 2.7 8282 chr3R 30396228 intergenic not near genes chr3R 30400369 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-399 398 chr3R 30480488 30480512 chr3R 30482956 30482980 jockey 6 2468 0.5 3.5 2.0 2.0 2492 chr3R 30480488 intron PH4alphaEFB + chr3R 30481734 intron PH4alphaEFB + chr3R 30482980 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-399 399 chr3R 30544733 30544761 chr3R 30544825 30544853 8 92 0.5 1.5 1.0 4.0 120 chr3R 30544733 intron tmod + chr3R 30544793 intron tmod + chr3R 30544853 intron tmod + chr3R_8_30540001 chr3R_30540001 RAL-399 400 chr3R 30627601 30627638 chr3R 30627681 30627718 5 80 1.0 1.5 1.2 2.3 117 chr3R 30627601 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-399 401 chr3R 30690164 30690185 chr3R 30690248 30690269 4 84 1.0 3.0 2.0 1.3 105 chr3R 30690164 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690269 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-399 402 chr3R 30901439 30901455 chr3R 30901946 30901960 4 506 1.5 1.0 1.2 1.8 521 chr3R 30901439 intron CG33483 - chr3R 30901700 intron CG33483 - chr3R 30901960 exon CG33483 - chr3R_4_30900001 chr3R_30900001 RAL-399 403 chr3R 31691530 31691555 chr3R 31696296 31696321 Doc 5 4765 0.5 3.0 1.8 1.8 4791 chr3R 31691530 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696321 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-399 404 chr3R 31964187 31964205 chr3R 31964273 31964291 4 86 1.0 0.5 0.8 2.2 104 chr3R 31964187 intron heph - chr3R 31964239 intron heph - chr3R 31964291 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-399 405 chr3R 31997990 31998022 chr3R 32005460 32005492 blood 6 7470 1.5 0.5 1.0 3.0 7502 chr3R 31997990 intron heph - chr3R 32001741 intron heph - chr3R 32005492 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-399 406 chrX 680842 680866 chrX 680925 680948 5 83 1.5 1.0 1.2 2.3 106 chrX 680842 intergenic not near genes chrX 680895 intergenic not near genes chrX 680948 intergenic not near genes chrX_5_680001 chrX_680001 RAL-399 407 chrX 1518040 1518066 chrX 1523440 1523468 jockey 4 5401 1.5 1.0 1.2 1.8 5428 chrX 1518040 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523468 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-399 408 chrX 3597550 3597582 chrX 3619718 3619750 roo 5 22168 1.5 1.5 1.5 2.0 22200 chrX 3597550 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-399 409 chrX 3630551 3630573 chrX 3630627 3630648 4 76 1.0 0.0 0.5 2.7 97 chrX 3630551 intron AstA-R1 + chrX 3630600 intron AstA-R1 + chrX 3630648 intron AstA-R1 + chrX_4_3630001 chrX_3630001 RAL-399 410 chrX 4293147 4293163 chrX 4293339 4293355 5 192 0.0 0.0 0.0 5.0 208 chrX 4293147 intergenic not near genes chrX 4293251 intergenic not near genes chrX 4293355 intergenic not near genes chrX_5_4290001 chrX_4290001 RAL-399 411 chrX 4656080 4656094 chrX 4656166 4656177 4 86 2.5 2.5 2.5 1.1 97 chrX 4656080 intron Cbp80 + chrX 4656128 intron Cbp80 + chrX 4656177 intron Cbp80 + chrX_4_4655001 chrX_4655001 RAL-399 412 chrX 4700398 4700426 chrX 4700740 4700769 jockey 4 343 1.5 0.0 0.8 2.2 371 chrX 4700398 3` UTR ctp + chrX 4700584 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-399 413 chrX 5096277 5096299 chrX 5103842 5103864 springer 4 7565 0.5 0.5 0.5 2.7 7587 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100070 intron,intron CG15465 +,rg + chrX 5103864 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-399 414 chrX 6392865 6392879 chrX 6397629 6397644 Doc 4 4765 1.5 0.0 0.8 2.2 4779 chrX 6392865 intergenic not near genes chrX 6395254 intergenic not near genes chrX 6397644 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-399 415 chrX 6865791 6865796 chrX 6865871 6865876 4 80 2.5 2.0 2.2 1.2 85 chrX 6865791 intron CG14434 - chrX 6865834 intron CG14434 - chrX 6865876 intron CG14434 - chrX_4_6865001 chrX_6865001 RAL-399 416 chrX 7023610 7023630 chrX 7030999 7031020 Tabor 6 7389 0.5 1.0 0.8 3.3 7410 chrX 7023610 intron CG12541 - chrX 7027315 intron CG12541 - chrX 7031020 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-399 417 chrX 8506028 8506057 chrX 8506106 8506135 4 78 1.5 1.5 1.5 1.6 107 chrX 8506028 intron CG33181 + chrX 8506082 intron CG33181 + chrX 8506135 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-399 418 chrX 8536762 8536779 chrX 8536838 8536855 4 76 1.0 1.0 1.0 2.0 93 chrX 8536762 intron Nrg + chrX 8536808 intron Nrg + chrX 8536855 intron Nrg + chrX_4_8535001 chrX_8535001 RAL-399 419 chrX 8605311 8605330 chrX 8605388 8605407 5 77 0.5 1.5 1.0 2.5 96 chrX 8605311 exon Caf1-180 - chrX 8605359 exon Caf1-180 - chrX 8605407 exon Caf1-180 - chrX_5_8605001 chrX_8605001 RAL-399 420 chrX 9758048 9758081 chrX 9758133 9758166 4 85 1.0 0.5 0.8 2.2 118 chrX 9758048 intergenic not near genes chrX 9758107 intergenic not near genes chrX 9758166 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-399 421 chrX 10431337 10431351 chrX 10431417 10431431 4 80 0.5 1.0 0.8 2.2 94 chrX 10431337 intron CG32683 - chrX 10431384 intron CG32683 - chrX 10431431 intron CG32683 - chrX_4_10430001 chrX_10430001 RAL-399 422 chrX 11839040 11839060 chrX 11839288 11839308 4 248 0.0 0.5 0.2 3.3 268 chrX 11839040 intergenic not near genes chrX 11839174 intergenic Cyp28c1 + chrX 11839308 intergenic Cyp28c1 + chrX_4_11835001 chrX_11835001 RAL-399 423 chrX 12350775 12350806 chrX 12350856 12350887 8 81 0.0 0.0 0.0 8.0 112 chrX 12350775 intergenic not near genes chrX 12350831 intergenic not near genes chrX 12350887 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-399 424 chrX 12718238 12718256 chrX 12718319 12718337 5 81 0.5 0.0 0.2 4.2 99 chrX 12718238 intron,intron Smr -,CR43963 - chrX 12718288 intron,intron Smr -,CR43963 - chrX 12718337 intron,intron Smr -,CR43963 - chrX_5_12715001 chrX_12715001 RAL-399 425 chrX 13172350 13172376 chrX 13172426 13172451 7 76 0.0 0.5 0.2 5.8 101 chrX 13172350 exon CG34411 - chrX 13172400 intron CG34411 - chrX 13172451 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-399 426 chrX 13236886 13236901 chrX 13236970 13236986 4 84 0.0 0.5 0.2 3.3 100 chrX 13236886 intron mew - chrX 13236936 intron mew - chrX 13236986 intron mew - chrX_4_13235001 chrX_13235001 RAL-399 427 chrX 13374843 13374868 chrX 13374923 13374948 4 80 0.0 0.0 0.0 4.0 105 chrX 13374843 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374948 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-399 428 chrX 13937978 13938006 chrX 13941249 13941277 I-element 4 3271 0.5 1.0 0.8 2.2 3299 chrX 13937978 intron mamo - chrX 13939628 intron mamo - chrX 13941277 intron mamo - chrX_4_13935001 chrX_13935001 RAL-399 429 chrX 14967523 14967543 chrX 14967744 14967764 5 221 1.0 1.5 1.2 2.3 241 chrX 14967523 intron eag + chrX 14967644 intron eag + chrX 14967764 intron eag + chrX_5_14965001 chrX_14965001 RAL-399 430 chrX 15413049 15413086 chrX 15417351 15417387 Juan 6 4302 1.0 1.0 1.0 3.0 4338 chrX 15413049 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-399 431 chrX 15666217 15666227 chrX 15666294 15666304 4 77 1.5 1.5 1.5 1.6 87 chrX 15666217 intergenic not near genes chrX 15666260 intergenic not near genes chrX 15666304 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-399 432 chrX 16689622 16689642 chrX 16689708 16689728 4 86 0.0 0.0 0.0 4.0 106 chrX 16689622 intron Sep4 - chrX 16689675 intron Sep4 - chrX 16689728 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-399 433 chrX 16951323 16951345 chrX 16951403 16951425 5 80 2.0 1.0 1.5 2.0 102 chrX 16951323 exon RhoGAP15B + chrX 16951374 exon RhoGAP15B + chrX 16951425 exon RhoGAP15B + chrX_5_16950001 chrX_16950001 RAL-399 434 chrX 17282881 17282906 chrX 17282959 17282984 9 78 0.0 0.0 0.0 9.0 103 chrX 17282881 intron CG5445 + chrX 17282932 5` UTR CG5445 + chrX 17282984 intron CG5445 + chrX_9_17280001 chrX_17280001 RAL-399 435 chrX 17493250 17493279 chrX 17493330 17493359 4 80 0.5 1.5 1.0 2.0 109 chrX 17493250 intron CG43658 - chrX 17493304 intron CG43658 - chrX 17493359 intron CG43658 - chrX_4_17490001 chrX_17490001 RAL-399 436 chrX 18125817 18125837 chrX 18125896 18125916 5 78 0.5 1.0 0.8 2.8 99 chrX 18125817 intron CG32553 - chrX 18125866 intron CG32553 - chrX 18125916 intron CG32553 - chrX_5_18125001 chrX_18125001 RAL-399 437 chrX 18486113 18486143 chrX 18486202 18486232 5 89 1.5 0.0 0.8 2.8 119 chrX 18486113 exon psh - chrX 18486172 intron psh - chrX 18486232 intron psh - chrX_5_18485001 chrX_18485001 RAL-399 438 chrX 13057297 13057300 chrX 19242813 19242814 6 6185514 1.5 3.0 2.2 1.9 6185517 chrX 13057297 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-399 439 chrX 19500732 19500748 chrX 19500819 19500834 4 87 0.0 1.5 0.8 2.2 102 chrX 19500732 intron,intron CG14200 +,Pfrx + chrX 19500783 intron,intron CG14200 +,Pfrx + chrX 19500834 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-399 440 chrX 19689404 19689436 chrX 19689482 19689514 5 78 1.0 2.0 1.5 2.0 110 chrX 19689404 intergenic Mer -,CG14227 - chrX 19689459 intergenic Mer - chrX 19689514 intergenic Mer - chrX_5_19685001 chrX_19685001 RAL-399 441 chrX 19710072 19710104 chrX 19711857 19711890 S-element 4 1786 1.0 0.5 0.8 2.2 1818 chrX 19710072 intron meso18E - chrX 19710981 intron meso18E - chrX 19711890 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-399 442 chrX 20082760 20082780 chrX 20082840 20082862 4 82 0.0 0.5 0.2 3.3 102 chrX 20082760 intergenic not near genes chrX 20082811 intergenic not near genes chrX 20082862 intergenic not near genes chrX_4_20080001 chrX_20080001 RAL-399 443 chrX 20105196 20105212 chrX 20105299 20105315 4 103 8.5 10.5 9.5 0.4 119 chrX 20105196 intergenic not near genes chrX 20105256 intergenic not near genes chrX 20105315 intergenic not near genes chrX_4_20105001 chrX_20105001 RAL-399 444 chrX 21197064 21197088 chrX 21197142 21197166 5 78 0.0 0.5 0.2 4.2 102 chrX 21197064 intergenic not near genes chrX 21197115 intergenic not near genes chrX 21197166 intergenic not near genes chrX_5_21195001 chrX_21195001 RAL-399 445 chrX 21253281 21253301 chrX 21253358 21253378 4 76 1.5 1.0 1.2 1.8 97 chrX 21253281 intron CG32521 - chrX 21253330 intron CG32521 - chrX 21253378 intron CG32521 - chrX_4_21250001 chrX_21250001 RAL-399 446 chrX 22996310 22996320 chrX 23003543 23003554 roo 4 7233 1.5 0.5 1.0 2.0 7244 chrX 22996310 intron,intron stnA -,stnB - chrX 22999932 intron,intron stnA -,stnB - chrX 23003554 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-399