SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47442 47473 chr2L 52573 52604 jockey 23 5131 12.5 13.0 12.8 1.7 5162 chr2L 47442 intron Cda5 - chr2L 50023 intron Cda5 - chr2L 52604 intron Cda5 - chr2L_23_50001 chr2L_50001 RAL-395 2 chr2L 170495 170519 chr2L 170610 170634 13 115 14.0 2.5 8.2 1.4 139 chr2L 170495 intron spen + chr2L 170564 intron spen + chr2L 170634 intron spen + chr2L_13_170001 chr2L_170001 RAL-395 3 chr2L 297660 297716 chr2L 297786 297842 32 126 5.5 6.5 6.0 4.6 182 chr2L 297660 intergenic Hop +,Pi3K21B + chr2L 297751 intergenic Pi3K21B +,Hop + chr2L 297842 intergenic Pi3K21B +,Hop + chr2L_32_295001 chr2L_295001 RAL-395 4 chr2L 314117 314151 chr2L 314220 314254 9 103 5.0 9.5 7.2 1.1 137 chr2L 314117 intron Plc21C + chr2L 314186 intron Plc21C + chr2L 314254 intron Plc21C + chr2L_9_310001 chr2L_310001 RAL-395 5 chr2L 323427 323485 chr2L 323531 323589 34 103 9.0 5.0 7.0 4.2 162 chr2L 323427 intron Plc21C + chr2L 323508 intron Plc21C + chr2L 323589 intron Plc21C + chr2L_34_320001 chr2L_320001 RAL-395 6 chr2L 325112 325143 chr2L 325214 325246 21 102 12.5 6.0 9.2 2.1 134 chr2L 325112 intron Plc21C + chr2L 325179 intron Plc21C + chr2L 325246 intron Plc21C + chr2L_21_325001 chr2L_325001 RAL-395 7 chr2L 347866 347915 chr2L 355391 355441 blood 26 7526 3.5 6.0 4.8 4.5 7575 chr2L 347866 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355441 3` UTR Plc21C + chr2L_26_350001 chr2L_350001 RAL-395 8 chr2L 395791 395843 chr2L 395895 395947 24 102 10.0 7.0 8.5 2.5 156 chr2L 395791 intergenic CR43718 + chr2L 395869 intergenic CR43718 + chr2L 395947 intergenic CR43718 + chr2L_24_395001 chr2L_395001 RAL-395 9 chr2L 395845 395846 chr2L 395894 395950 6 93 9.0 6.5 7.8 0.7 105 chr2L 395845 intergenic CR43718 + chr2L 395898 intergenic CR43718 + chr2L 395950 intergenic CR43718 + chr2L_6_395001 chr2L_395001 RAL-395 10 chr2L 407921 407971 chr2L 408028 408078 19 106 7.0 3.0 5.0 3.2 157 chr2L 407921 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408078 3` UTR AP-2alpha - chr2L_19_405001 chr2L_405001 RAL-395 11 chr2L 467338 467357 chr2L 467463 467482 12 125 11.5 14.0 12.8 0.9 144 chr2L 467338 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467482 intron CG4297 - chr2L_12_465001 chr2L_465001 RAL-395 12 chr2L 587695 587714 chr2L 588747 588796 21 1050 55.5 41.5 48.5 0.4 1101 chr2L 587695 intron Gsc - chr2L 588246 intron Gsc - chr2L 588796 intron Gsc - chr2L_21_585001 chr2L_585001 RAL-395 13 chr2L 686912 686946 chr2L 695978 696012 roo 19 9066 9.0 13.5 11.2 1.6 9100 chr2L 686912 intron ds - chr2L 691462 intron ds - chr2L 696012 intron ds - chr2L_19_690001 chr2L_690001 RAL-395 14 chr2L 702145 702182 chr2L 702256 702295 29 114 14.5 7.5 11.0 2.4 150 chr2L 702145 intron ds - chr2L 702220 intron ds - chr2L 702295 intron ds - chr2L_29_700001 chr2L_700001 RAL-395 15 chr2L 746562 746571 chr2L 746664 746673 7 101 16.0 9.5 12.8 0.5 111 chr2L 746562 intergenic not near genes chr2L 746618 intergenic not near genes chr2L 746673 intergenic not near genes chr2L_7_745001 chr2L_745001 RAL-395 16 chr2L 770442 770494 chr2L 772249 772258 Bari1 32 1804 9.5 10.0 9.8 3.0 1816 chr2L 770442 intergenic not near genes chr2L 771350 intergenic not near genes chr2L 772258 intergenic CR44614 + chr2L_32_770001 chr2L_770001 RAL-395 17 chr2L 839028 839069 chr2L 839126 839178 10 107 10.0 3.5 6.8 1.3 150 chr2L 839028 intron drongo - chr2L 839103 intron drongo - chr2L 839178 intron drongo - chr2L_10_835001 chr2L_835001 RAL-395 18 chr2L 849454 849487 chr2L 849571 849604 16 116 6.0 10.0 8.0 1.8 150 chr2L 849454 intron drongo - chr2L 849529 intron drongo - chr2L 849604 intron drongo - chr2L_16_845001 chr2L_845001 RAL-395 19 chr2L 877819 877877 chr2L 877926 877983 20 107 6.5 7.5 7.0 2.5 164 chr2L 877819 3` UTR,exon CG15824 -,ninaA + chr2L 877901 3` UTR,intron CG15824 -,ninaA + chr2L 877983 3` UTR,exon CG15824 -,ninaA + chr2L_20_875001 chr2L_875001 RAL-395 20 chr2L 922441 922496 chr2L 922548 922602 18 107 4.0 8.5 6.2 2.5 161 chr2L 922441 intergenic CG4341 + chr2L 922522 intergenic CG4341 + chr2L 922602 intergenic CG4341 + chr2L_18_920001 chr2L_920001 RAL-395 21 chr2L 976854 976913 chr2L 984516 984575 roo 13 7662 5.0 8.0 6.5 1.7 7721 chr2L 976854 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984575 intergenic not near genes chr2L_13_980001 chr2L_980001 RAL-395 22 chr2L 996699 996721 chr2L 1005820 1005842 roo 4 9120 5.5 1.5 3.5 0.9 9143 chr2L 996699 intergenic not near genes chr2L 1001270 intergenic not near genes chr2L 1005842 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-395 23 chr2L 1025094 1025120 chr2L 1025200 1025226 14 106 15.5 16.0 15.8 0.8 132 chr2L 1025094 intron IA-2 - chr2L 1025160 intron IA-2 - chr2L 1025226 intron IA-2 - chr2L_14_1025001 chr2L_1025001 RAL-395 24 chr2L 1035535 1035584 chr2L 1035638 1035687 26 102 10.0 7.5 8.8 2.7 152 chr2L 1035535 intron IA-2 - chr2L 1035611 intron IA-2 - chr2L 1035687 intron IA-2 - chr2L_26_1035001 chr2L_1035001 RAL-395 25 chr2L 1042598 1042606 chr2L 1042701 1042709 8 103 6.0 0.0 3.0 2.0 111 chr2L 1042598 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_8_1040001 chr2L_1040001 RAL-395 26 chr2L 1047383 1047424 chr2L 1050758 1050814 27 3377 36.5 58.0 47.2 0.6 3431 chr2L 1047383 intron IA-2 - chr2L 1049098 intergenic not near genes chr2L 1050814 3` UTR S - chr2L_27_1045001 chr2L_1045001 RAL-395 27 chr2L 1095987 1095992 chr2L 1096117 1096122 6 130 32.5 12.5 22.5 0.3 135 chr2L 1095987 intron CG4629 - chr2L 1096054 intron CG4629 - chr2L 1096122 intron CG4629 - chr2L_6_1095001 chr2L_1095001 RAL-395 28 chr2L 1113990 1114047 chr2L 1114226 1114284 24 238 10.0 5.5 7.8 2.7 294 chr2L 1113990 3` UTR CG14340 + chr2L 1114137 3` UTR CG14340 + chr2L 1114284 intergenic CG14340 +,Pino - chr2L_24_1110001 chr2L_1110001 RAL-395 29 chr2L 1156836 1156843 chr2L 1156967 1156974 7 131 19.5 6.0 12.8 0.5 138 chr2L 1156836 intron capt - chr2L 1156905 intron capt - chr2L 1156974 intron capt - chr2L_7_1155001 chr2L_1155001 RAL-395 30 chr2L 1156844 1156893 chr2L 1156966 1157023 18 128 6.5 6.0 6.2 2.5 179 chr2L 1156844 intron capt - chr2L 1156934 intron capt - chr2L 1157023 intron capt - chr2L_18_1155001 chr2L_1155001 RAL-395 31 chr2L 1198259 1198301 chr2L 1198402 1198444 23 142 7.5 5.5 6.5 3.1 185 chr2L 1198259 intergenic CG5139 - chr2L 1198352 intergenic CG5139 - chr2L 1198444 intergenic CG5139 - chr2L_23_1195001 chr2L_1195001 RAL-395 32 chr2L 1205914 1205943 chr2L 1206012 1206048 21 103 1.0 11.0 6.0 3.0 134 chr2L 1205914 intergenic not near genes chr2L 1205981 intergenic not near genes chr2L 1206048 intergenic not near genes chr2L_21_1205001 chr2L_1205001 RAL-395 33 chr2L 1218381 1218413 chr2L 1218497 1218529 23 116 12.5 0.0 6.2 3.2 148 chr2L 1218381 intergenic not near genes chr2L 1218455 intergenic not near genes chr2L 1218529 intergenic not near genes chr2L_23_1215001 chr2L_1215001 RAL-395 34 chr2L 1220104 1220118 chr2L 1227596 1227610 blood 9 7492 21.0 10.0 15.5 0.5 7506 chr2L 1220104 intron CG42329 + chr2L 1223857 intron CG42329 + chr2L 1227610 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-395 35 chr2L 1220119 1220160 chr2L 1227593 1227652 blood 22 7489 11.0 9.5 10.2 2.0 7533 chr2L 1220119 intron CG42329 + chr2L 1223886 intron CG42329 + chr2L 1227652 intron CG42329 + chr2L_22_1220001 chr2L_1220001 RAL-395 36 chr2L 1261134 1261239 chr2L 1261242 1261343 20 107 0.0 0.0 0.0 20.0 209 chr2L 1261134 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261343 intron robo3 + chr2L_20_1260001 chr2L_1260001 RAL-395 37 chr2L 1301749 1301783 chr2L 1302312 1302348 gypsy 5 564 0.0 11.5 5.8 0.7 599 chr2L 1301749 intergenic not near genes chr2L 1302048 intergenic not near genes chr2L 1302348 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-395 38 chr2L 1312842 1312896 chr2L 1312955 1313009 19 112 6.5 8.0 7.2 2.3 167 chr2L 1312842 intergenic not near genes chr2L 1312926 intergenic not near genes chr2L 1313009 intergenic not near genes chr2L_19_1310001 chr2L_1310001 RAL-395 39 chr2L 1320252 1320309 chr2L 1320356 1320413 35 101 9.5 10.5 10.0 3.2 161 chr2L 1320252 intergenic not near genes chr2L 1320332 intergenic not near genes chr2L 1320413 intergenic not near genes chr2L_35_1320001 chr2L_1320001 RAL-395 40 chr2L 1321999 1322056 chr2L 1322113 1322171 23 115 2.5 4.5 3.5 5.1 172 chr2L 1321999 intergenic not near genes chr2L 1322085 intergenic not near genes chr2L 1322171 intergenic not near genes chr2L_23_1320001 chr2L_1320001 RAL-395 41 chr2L 1392544 1392594 chr2L 1392684 1392734 27 139 11.5 10.0 10.8 2.3 190 chr2L 1392544 intron lea - chr2L 1392639 intron lea - chr2L 1392734 exon lea - chr2L_27_1390001 chr2L_1390001 RAL-395 42 chr2L 1404212 1404266 chr2L 1406153 1406207 34 1940 38.5 28.5 33.5 1.0 1995 chr2L 1404212 intron lea - chr2L 1405210 intron lea - chr2L 1406207 intron lea - chr2L_34_1405001 chr2L_1405001 RAL-395 43 chr2L 1403398 1403405 chr2L 1406233 1406247 9 2840 42.0 54.0 48.0 0.2 2849 chr2L 1403398 intron lea - chr2L 1404822 intron lea - chr2L 1406247 intron lea - chr2L_9_1400001 chr2L_1400001 RAL-395 44 chr2L 1403392 1403448 chr2L 1406248 1406283 9 2845 56.0 55.0 55.5 0.2 2891 chr2L 1403392 intron lea - chr2L 1404838 intron lea - chr2L 1406283 intron lea - chr2L_9_1400001 chr2L_1400001 RAL-395 45 chr2L 1426765 1426816 chr2L 1426871 1426923 19 107 6.5 7.5 7.0 2.4 158 chr2L 1426765 intergenic not near genes chr2L 1426844 intergenic not near genes chr2L 1426923 intergenic not near genes chr2L_19_1425001 chr2L_1425001 RAL-395 46 chr2L 1464133 1464179 chr2L 1464391 1464437 31 257 8.5 8.5 8.5 3.3 304 chr2L 1464133 intergenic not near genes chr2L 1464285 intergenic not near genes chr2L 1464437 intergenic not near genes chr2L_31_1460001 chr2L_1460001 RAL-395 47 chr2L 1536470 1536526 chr2L 1536628 1536683 20 158 0.0 10.0 5.0 3.3 213 chr2L 1536470 intergenic not near genes chr2L 1536576 intergenic not near genes chr2L 1536683 intergenic not near genes chr2L_20_1535001 chr2L_1535001 RAL-395 48 chr2L 1570667 1570717 chr2L 1573565 1573615 F-element 31 2897 7.5 8.5 8.0 3.4 2948 chr2L 1570667 intron haf + chr2L 1572141 intron haf + chr2L 1573615 intron haf + chr2L_31_1570001 chr2L_1570001 RAL-395 49 chr2L 1590931 1590988 chr2L 1591033 1591090 25 101 9.0 8.0 8.5 2.6 159 chr2L 1590931 intron haf + chr2L 1591010 intron haf + chr2L 1591090 intron haf + chr2L_25_1590001 chr2L_1590001 RAL-395 50 chr2L 1622782 1622834 chr2L 1622894 1622945 20 112 10.5 1.5 6.0 2.9 163 chr2L 1622782 3` UTR CR44603 - chr2L 1622864 3` UTR CR44603 - chr2L 1622945 3` UTR CR44603 - chr2L_20_1620001 chr2L_1620001 RAL-395 51 chr2L 1634751 1634763 chr2L 1634862 1634874 4 110 13.0 14.5 13.8 0.3 123 chr2L 1634751 intergenic not near genes chr2L 1634812 intergenic not near genes chr2L 1634874 intergenic not near genes chr2L_4_1630001 chr2L_1630001 RAL-395 52 chr2L 1635394 1635431 chr2L 1635556 1635590 17 161 5.5 20.5 13.0 1.2 196 chr2L 1635394 intergenic not near genes chr2L 1635492 intergenic not near genes chr2L 1635590 intergenic not near genes chr2L_17_1635001 chr2L_1635001 RAL-395 53 chr2L 1678949 1679002 chr2L 1686440 1686486 blood 24 7490 9.5 5.0 7.2 2.9 7537 chr2L 1678949 intron chinmo + chr2L 1682718 intron chinmo + chr2L 1686486 intron chinmo + chr2L_24_1680001 chr2L_1680001 RAL-395 54 chr2L 1692059 1692107 chr2L 1692166 1692210 15 106 2.5 9.5 6.0 2.1 151 chr2L 1692059 intron chinmo + chr2L 1692134 intron chinmo + chr2L 1692210 intron chinmo + chr2L_15_1690001 chr2L_1690001 RAL-395 55 chr2L 1711334 1711386 chr2L 1711684 1711736 mdg3 35 350 9.0 13.0 11.0 2.9 402 chr2L 1711334 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711736 3` UTR frtz - chr2L_35_1710001 chr2L_1710001 RAL-395 56 chr2L 1721809 1721853 chr2L 1721919 1721963 21 108 0.0 5.5 2.8 5.5 154 chr2L 1721809 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721963 intron Rim2 - chr2L_21_1720001 chr2L_1720001 RAL-395 57 chr2L 1724786 1724797 chr2L 1724894 1724905 7 108 16.5 6.0 11.2 0.6 119 chr2L 1724786 3` UTR Eno - chr2L 1724846 3` UTR Eno - chr2L 1724905 3` UTR Eno - chr2L_7_1720001 chr2L_1720001 RAL-395 58 chr2L 1724799 1724832 chr2L 1724887 1724940 12 106 8.0 6.0 7.0 1.5 141 chr2L 1724799 3` UTR Eno - chr2L 1724870 3` UTR Eno - chr2L 1724940 3` UTR Eno - chr2L_12_1720001 chr2L_1720001 RAL-395 59 chr2L 1744784 1744835 chr2L 1744888 1744939 26 102 7.5 6.5 7.0 3.2 155 chr2L 1744784 intron CG17646 + chr2L 1744862 intron CG17646 + chr2L 1744939 exon CG17646 + chr2L_26_1740001 chr2L_1740001 RAL-395 60 chr2L 1850040 1850051 chr2L 1850144 1850155 7 104 21.0 8.0 14.5 0.5 115 chr2L 1850040 intron wry + chr2L 1850098 intron wry + chr2L 1850155 intron wry + chr2L_7_1850001 chr2L_1850001 RAL-395 61 chr2L 1850052 1850096 chr2L 1850141 1850200 17 102 10.0 7.0 8.5 1.8 148 chr2L 1850052 intron wry + chr2L 1850126 intron wry + chr2L 1850200 intron wry + chr2L_17_1850001 chr2L_1850001 RAL-395 62 chr2L 1850345 1850390 chr2L 1850451 1850496 36 105 11.0 3.5 7.2 4.4 151 chr2L 1850345 intron wry + chr2L 1850420 intron wry + chr2L 1850496 intron wry + chr2L_36_1850001 chr2L_1850001 RAL-395 63 chr2L 1883391 1883445 chr2L 1884000 1884051 18 607 3.0 8.0 5.5 2.8 660 chr2L 1883391 intron CG15358 - chr2L 1883721 intron CG15358 - chr2L 1884051 exon CG15358 - chr2L_18_1880001 chr2L_1880001 RAL-395 64 chr2L 1966831 1966888 chr2L 1967118 1967175 31 286 11.0 9.0 10.0 2.8 344 chr2L 1966831 intron erm - chr2L 1967003 intron erm - chr2L 1967175 intron erm - chr2L_31_1965001 chr2L_1965001 RAL-395 65 chr2L 1999532 1999582 chr2L 1999722 1999772 21 190 5.5 9.5 7.5 2.5 240 chr2L 1999532 intron CG33543 - chr2L 1999652 intron CG33543 - chr2L 1999772 intron CG33543 - chr2L_21_1995001 chr2L_1995001 RAL-395 66 chr2L 2007841 2007870 chr2L 2007974 2008004 14 134 7.5 9.5 8.5 1.5 163 chr2L 2007841 intergenic CR45712 + chr2L 2007922 intergenic CR45712 +,Nplp4 + chr2L 2008004 intergenic CR45712 +,Nplp4 + chr2L_14_2005001 chr2L_2005001 RAL-395 67 chr2L 2047781 2047805 chr2L 2048002 2048025 18 220 21.5 0.0 10.8 1.5 244 chr2L 2047781 3` UTR Kebab + chr2L 2047903 3` UTR Kebab + chr2L 2048025 3` UTR Kebab + chr2L_18_2045001 chr2L_2045001 RAL-395 68 chr2L 2073322 2073356 chr2L 2073431 2073462 25 107 18.0 19.5 18.8 1.3 140 chr2L 2073322 intron dpr3 - chr2L 2073392 intron dpr3 - chr2L 2073462 intron dpr3 - chr2L_25_2070001 chr2L_2070001 RAL-395 69 chr2L 2100375 2100406 chr2L 2109548 2109548 roo 24 9169 6.5 17.0 11.8 1.9 9173 chr2L 2100375 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_24_2100001 chr2L_2100001 RAL-395 70 chr2L 2112088 2112144 chr2L 2119776 2119831 opus 25 7686 8.0 11.5 9.8 2.3 7743 chr2L 2112088 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119831 intergenic not near genes chr2L_25_2115001 chr2L_2115001 RAL-395 71 chr2L 2145724 2145773 chr2L 2145836 2145885 36 112 11.5 10.0 10.8 3.1 161 chr2L 2145724 3` UTR CG11723 - chr2L 2145804 3` UTR CG11723 - chr2L 2145885 3` UTR CG11723 - chr2L_36_2145001 chr2L_2145001 RAL-395 72 chr2L 2186909 2186959 chr2L 2187011 2187061 24 102 6.5 6.0 6.2 3.3 152 chr2L 2186909 intergenic CR44066 - chr2L 2186985 3` UTR CR44066 - chr2L 2187061 3` UTR CR44066 - chr2L_24_2185001 chr2L_2185001 RAL-395 73 chr2L 2250393 2250432 chr2L 2251186 2251225 19 793 10.0 0.0 5.0 3.2 832 chr2L 2250393 intergenic Ser12 - chr2L 2250809 exon Ser12 - chr2L 2251225 exon Ser12 - chr2L_19_2250001 chr2L_2250001 RAL-395 74 chr2L 2256446 2256477 chr2L 2256552 2256583 15 106 8.5 8.5 8.5 1.6 137 chr2L 2256446 intergenic not near genes chr2L 2256514 intergenic not near genes chr2L 2256583 intergenic not near genes chr2L_15_2255001 chr2L_2255001 RAL-395 75 chr2L 2290556 2290616 chr2L 2290658 2290718 19 102 8.5 11.5 10.0 1.7 162 chr2L 2290556 exon robl22E - chr2L 2290637 5` UTR robl22E - chr2L 2290718 5` UTR robl22E - chr2L_19_2290001 chr2L_2290001 RAL-395 76 chr2L 2294017 2294073 chr2L 2299245 2299304 copia 31 5230 8.0 7.5 7.8 3.5 5287 chr2L 2294017 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299304 intergenic not near genes chr2L_31_2295001 chr2L_2295001 RAL-395 77 chr2L 2302025 2302076 chr2L 2302133 2302184 32 107 10.5 4.5 7.5 3.8 159 chr2L 2302025 intergenic not near genes chr2L 2302104 intergenic not near genes chr2L 2302184 intergenic not near genes chr2L_32_2300001 chr2L_2300001 RAL-395 78 chr2L 2311044 2311090 chr2L 2311166 2311212 20 122 9.0 7.0 8.0 2.2 168 chr2L 2311044 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311212 intron CG9967 - chr2L_20_2310001 chr2L_2310001 RAL-395 79 chr2L 2317099 2317126 chr2L 2317295 2317323 6 196 39.0 48.0 43.5 0.1 224 chr2L 2317099 intron,intron CG9967 -,eys + chr2L 2317211 intron,intron CG9967 -,eys + chr2L 2317323 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-395 80 chr2L 2372341 2372401 chr2L 2372453 2372506 5 109 0.0 4.5 2.2 1.6 165 chr2L 2372341 intergenic CG3609 - chr2L 2372424 intergenic CG3609 - chr2L 2372506 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-395 81 chr2L 2427351 2427401 chr2L 2427463 2427512 25 111 9.5 5.5 7.5 2.9 161 chr2L 2427351 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427512 3` UTR CR44912 - chr2L_25_2425001 chr2L_2425001 RAL-395 82 chr2L 2437034 2437076 chr2L 2437247 2437274 12 212 7.0 11.0 9.0 1.2 240 chr2L 2437034 intron dpp + chr2L 2437154 intron dpp + chr2L 2437274 intron dpp + chr2L_12_2435001 chr2L_2435001 RAL-395 83 chr2L 2439246 2439279 chr2L 2439349 2439368 25 101 19.5 16.0 17.8 1.3 122 chr2L 2439246 intron dpp + chr2L 2439307 intron dpp + chr2L 2439368 intron dpp + chr2L_25_2435001 chr2L_2435001 RAL-395 84 chr2L 2475653 2475702 chr2L 2475764 2475813 34 110 5.5 9.0 7.2 4.1 160 chr2L 2475653 intergenic not near genes chr2L 2475733 intergenic not near genes chr2L 2475813 intergenic not near genes chr2L_34_2475001 chr2L_2475001 RAL-395 85 chr2L 2504201 2504236 chr2L 2504305 2504340 15 103 6.5 12.5 9.5 1.4 139 chr2L 2504201 intergenic not near genes chr2L 2504270 intergenic not near genes chr2L 2504340 intergenic not near genes chr2L_15_2500001 chr2L_2500001 RAL-395 86 chr2L 2557200 2557214 chr2L 2557302 2557316 8 102 7.0 13.5 10.2 0.7 116 chr2L 2557200 intergenic not near genes chr2L 2557258 intergenic not near genes chr2L 2557316 intergenic not near genes chr2L_8_2555001 chr2L_2555001 RAL-395 87 chr2L 2565531 2565562 chr2L 2571630 2571661 297 12 6099 6.0 13.5 9.8 1.1 6130 chr2L 2565531 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571661 exon Cyp309a2 - chr2L_12_2565001 chr2L_2565001 RAL-395 88 chr2L 2618011 2618063 chr2L 2618114 2618167 19 104 10.0 6.5 8.2 2.1 156 chr2L 2618011 intergenic not near genes chr2L 2618089 intergenic not near genes chr2L 2618167 intergenic not near genes chr2L_19_2615001 chr2L_2615001 RAL-395 89 chr2L 2661181 2661232 chr2L 2663045 2663048 I-element 21 1859 3.0 14.0 8.5 2.2 1867 chr2L 2661181 intergenic not near genes chr2L 2662114 intergenic not near genes chr2L 2663048 intergenic not near genes chr2L_21_2660001 chr2L_2660001 RAL-395 90 chr2L 2667602 2667656 chr2L 2667706 2667761 36 105 11.0 9.0 10.0 3.3 159 chr2L 2667602 intergenic not near genes chr2L 2667682 intergenic not near genes chr2L 2667761 intergenic not near genes chr2L_36_2665001 chr2L_2665001 RAL-395 91 chr2L 2703421 2703440 chr2L 2703531 2703550 15 110 7.5 16.5 12.0 1.2 129 chr2L 2703421 intron CG31690 + chr2L 2703486 intron CG31690 + chr2L 2703550 intron CG31690 + chr2L_15_2700001 chr2L_2700001 RAL-395 92 chr2L 2713492 2713541 chr2L 2713617 2713666 23 125 14.5 11.5 13.0 1.6 174 chr2L 2713492 intron CG31690 + chr2L 2713579 intron CG31690 + chr2L 2713666 intron CG31690 + chr2L_23_2710001 chr2L_2710001 RAL-395 93 chr2L 2772586 2772619 chr2L 2779194 2779227 297 7 6604 6.5 2.5 4.5 1.3 6641 chr2L 2772586 3` UTR Syt1 - chr2L 2775906 intron Syt1 - chr2L 2779227 3` UTR Syt1 - chr2L_7_2775001 chr2L_2775001 RAL-395 94 chr2L 2788624 2788638 chr2L 2788729 2788742 6 105 21.0 16.0 18.5 0.3 118 chr2L 2788624 intron Syt1 - chr2L 2788683 intron Syt1 - chr2L 2788742 intron Syt1 - chr2L_6_2785001 chr2L_2785001 RAL-395 95 chr2L 2800587 2800600 chr2L 2800695 2800706 6 107 11.0 0.0 5.5 0.9 119 chr2L 2800587 intergenic not near genes chr2L 2800646 intergenic not near genes chr2L 2800706 intergenic not near genes chr2L_6_2800001 chr2L_2800001 RAL-395 96 chr2L 2826514 2826576 chr2L 2826632 2826687 23 116 3.0 8.5 5.8 3.4 173 chr2L 2826514 intron Duox - chr2L 2826600 intron Duox - chr2L 2826687 intron Duox - chr2L_23_2825001 chr2L_2825001 RAL-395 97 chr2L 2857795 2857829 chr2L 2857897 2857930 7 102 6.0 3.0 4.5 1.3 135 chr2L 2857795 intron CG2991 + chr2L 2857862 intron CG2991 + chr2L 2857930 intron CG2991 + chr2L_7_2855001 chr2L_2855001 RAL-395 98 chr2L 2873413 2873469 chr2L 2873517 2873573 8 104 0.0 5.5 2.8 2.1 160 chr2L 2873413 intron CG31694 - chr2L 2873493 intron CG31694 - chr2L 2873573 intron CG31694 - chr2L_8_2870001 chr2L_2870001 RAL-395 99 chr2L 2885349 2885397 chr2L 2885452 2885500 24 103 4.5 7.5 6.0 3.4 151 chr2L 2885349 intron NTPase - chr2L 2885424 intron NTPase - chr2L 2885500 intron NTPase - chr2L_24_2885001 chr2L_2885001 RAL-395 100 chr2L 2887272 2887314 chr2L 2887414 2887455 19 140 10.0 6.5 8.2 2.1 183 chr2L 2887272 intron lilli + chr2L 2887364 intron lilli + chr2L 2887455 intron lilli + chr2L_19_2885001 chr2L_2885001 RAL-395 101 chr2L 2933275 2933316 chr2L 2935480 2935521 pogo 21 2205 7.5 10.5 9.0 2.1 2246 chr2L 2933275 intron lilli + chr2L 2934398 intron lilli + chr2L 2935521 intron lilli + chr2L_21_2930001 chr2L_2930001 RAL-395 102 chr2L 3073006 3073057 chr2L 3078235 3078286 copia 20 5229 8.0 9.0 8.5 2.1 5280 chr2L 3073006 intron toc - chr2L 3075646 intron toc - chr2L 3078286 intron toc - chr2L_20_3075001 chr2L_3075001 RAL-395 103 chr2L 3134928 3134953 chr2L 3135031 3135056 8 103 6.0 7.5 6.8 1.0 128 chr2L 3134928 intron toc - chr2L 3134992 intron toc - chr2L 3135056 intron toc - chr2L_8_3130001 chr2L_3130001 RAL-395 104 chr2L 3147249 3147304 chr2L 3147352 3147407 45 102 9.5 10.5 10.0 4.1 158 chr2L 3147249 3` UTR Mad - chr2L 3147328 3` UTR Mad - chr2L 3147407 3` UTR Mad - chr2L_45_3145001 chr2L_3145001 RAL-395 105 chr2L 3156510 3156563 chr2L 3156632 3156682 14 122 0.5 5.5 3.0 3.5 172 chr2L 3156510 intron Mad - chr2L 3156596 intron Mad - chr2L 3156682 intron Mad - chr2L_14_3155001 chr2L_3155001 RAL-395 106 chr2L 3186444 3186502 chr2L 3186556 3186614 34 112 4.0 5.5 4.8 5.9 170 chr2L 3186444 intron CG34393 - chr2L 3186529 intron CG34393 - chr2L 3186614 intron CG34393 - chr2L_34_3185001 chr2L_3185001 RAL-395 107 chr2L 3192186 3192201 chr2L 3192323 3192338 8 136 14.0 9.0 11.5 0.6 152 chr2L 3192186 exon CG34393 - chr2L 3192262 intron CG34393 - chr2L 3192338 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-395 108 chr2L 3192203 3192238 chr2L 3192318 3192375 12 130 6.0 8.0 7.0 1.5 172 chr2L 3192203 exon CG34393 - chr2L 3192289 intron CG34393 - chr2L 3192375 intron CG34393 - chr2L_12_3190001 chr2L_3190001 RAL-395 109 chr2L 3202713 3202761 chr2L 3210168 3210216 mdg1 16 7455 7.0 0.0 3.5 3.6 7503 chr2L 3202713 intergenic not near genes chr2L 3206464 intergenic not near genes chr2L 3210216 intergenic CR45336 + chr2L_16_3205001 chr2L_3205001 RAL-395 110 chr2L 3251464 3251502 chr2L 3259085 3259124 springer 24 7622 1.5 9.5 5.5 3.7 7660 chr2L 3251464 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259124 intergenic not near genes chr2L_24_3255001 chr2L_3255001 RAL-395 111 chr2L 3261487 3261506 chr2L 3261605 3261624 12 118 13.0 21.0 17.0 0.7 137 chr2L 3261487 intergenic CR45338 -,CR45337 - chr2L 3261556 intergenic CR45338 -,CR45337 - chr2L 3261624 intergenic CR45338 -,CR45337 - chr2L_12_3260001 chr2L_3260001 RAL-395 112 chr2L 3272964 3272966 chr2L 3273074 3273076 4 110 4.0 11.5 7.8 0.5 112 chr2L 3272964 intergenic not near genes chr2L 3273020 intergenic not near genes chr2L 3273076 intergenic not near genes chr2L_4_3270001 chr2L_3270001 RAL-395 113 chr2L 3286922 3286978 chr2L 3287132 3287166 21 209 7.0 13.0 10.0 1.9 244 chr2L 3286922 intergenic not near genes chr2L 3287044 intergenic not near genes chr2L 3287166 intergenic not near genes chr2L_21_3285001 chr2L_3285001 RAL-395 114 chr2L 3291211 3291270 chr2L 3291316 3291376 23 104 5.5 8.5 7.0 2.9 165 chr2L 3291211 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291376 3` UTR CG9664 - chr2L_23_3290001 chr2L_3290001 RAL-395 115 chr2L 3388575 3388628 chr2L 3388842 3388895 pogo 26 267 10.5 5.0 7.8 3.0 320 chr2L 3388575 intergenic CG42460 - chr2L 3388735 intergenic CG42460 - chr2L 3388895 intergenic CG42460 -,CR44791 + chr2L_26_3385001 chr2L_3385001 RAL-395 116 chr2L 3444095 3444108 chr2L 3444200 3444213 5 105 9.0 19.0 14.0 0.3 118 chr2L 3444095 intergenic not near genes chr2L 3444154 intergenic not near genes chr2L 3444213 intergenic not near genes chr2L_5_3440001 chr2L_3440001 RAL-395 117 chr2L 3508324 3508375 chr2L 3508428 3508479 15 104 4.0 7.0 5.5 2.3 155 chr2L 3508324 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508479 intergenic CR45299 +,tim - chr2L_15_3505001 chr2L_3505001 RAL-395 118 chr2L 3584645 3584704 chr2L 3584748 3584807 24 102 8.0 2.5 5.2 3.9 162 chr2L 3584645 intergenic not near genes chr2L 3584726 intergenic not near genes chr2L 3584807 intergenic not near genes chr2L_24_3580001 chr2L_3580001 RAL-395 119 chr2L 3634084 3634134 chr2L 3634192 3634242 27 108 8.0 8.5 8.2 2.9 158 chr2L 3634084 intron for - chr2L 3634163 intron for - chr2L 3634242 exon for - chr2L_27_3630001 chr2L_3630001 RAL-395 120 chr2L 3649750 3649809 chr2L 3654993 3655052 copia 24 5243 2.5 7.5 5.0 4.0 5302 chr2L 3649750 intron for - chr2L 3652401 intron for - chr2L 3655052 intron for - chr2L_24_3650001 chr2L_3650001 RAL-395 121 chr2L 3670703 3670762 chr2L 3670811 3670868 33 107 6.0 6.0 6.0 4.7 165 chr2L 3670703 intron CG34340 + chr2L 3670786 intron CG34340 + chr2L 3670868 intron CG34340 + chr2L_33_3670001 chr2L_3670001 RAL-395 122 chr2L 3673877 3673904 chr2L 3674004 3674031 17 127 9.5 17.0 13.2 1.2 154 chr2L 3673877 intron CG34340 + chr2L 3673954 intron CG34340 + chr2L 3674031 intron CG34340 + chr2L_17_3670001 chr2L_3670001 RAL-395 123 chr2L 3677932 3678010 chr2L 3678083 3678116 4 117 1.0 7.0 4.0 0.8 184 chr2L 3677932 intron CG34340 + chr2L 3678024 intron CG34340 + chr2L 3678116 intron CG34340 + chr2L_4_3675001 chr2L_3675001 RAL-395 124 chr2L 3702877 3702928 chr2L 3702988 3703040 32 111 5.0 7.0 6.0 4.6 163 chr2L 3702877 5` UTR CR44311 + chr2L 3702958 intergenic CR44311 + chr2L 3703040 intergenic CR44311 + chr2L_32_3700001 chr2L_3700001 RAL-395 125 chr2L 3785451 3785474 chr2L 3785553 3785571 5 101 38.0 26.5 32.2 0.2 120 chr2L 3785451 exon CG31960 + chr2L 3785511 3` UTR CG31960 + chr2L 3785571 3` UTR CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-395 126 chr2L 3785482 3785509 chr2L 3786305 3786332 11 822 31.5 9.5 20.5 0.5 850 chr2L 3785482 3` UTR CG31960 + chr2L 3785907 exon CG31958 + chr2L 3786332 3` UTR CG31958 + chr2L_11_3785001 chr2L_3785001 RAL-395 127 chr2L 3788388 3788410 chr2L 3788511 3788533 7 123 6.0 6.0 6.0 1.0 145 chr2L 3788388 intron CG3921 + chr2L 3788460 intron CG3921 + chr2L 3788533 intron CG3921 + chr2L_7_3785001 chr2L_3785001 RAL-395 128 chr2L 3819008 3819054 chr2L 3819115 3819157 17 107 11.0 0.0 5.5 2.6 149 chr2L 3819008 intergenic CR44077 + chr2L 3819082 intergenic not near genes chr2L 3819157 intergenic not near genes chr2L_17_3815001 chr2L_3815001 RAL-395 129 chr2L 3819601 3819626 chr2L 3819703 3819728 17 102 9.5 10.0 9.8 1.6 127 chr2L 3819601 intergenic not near genes chr2L 3819664 intergenic not near genes chr2L 3819728 intergenic not near genes chr2L_17_3815001 chr2L_3815001 RAL-395 130 chr2L 3847307 3847351 chr2L 3847412 3847456 18 102 8.0 10.0 9.0 1.8 149 chr2L 3847307 intergenic not near genes chr2L 3847382 intergenic not near genes chr2L 3847456 intergenic not near genes chr2L_18_3845001 chr2L_3845001 RAL-395 131 chr2L 3891874 3891922 chr2L 3891985 3892033 22 111 3.0 11.5 7.2 2.7 159 chr2L 3891874 intron capu - chr2L 3891954 intron capu - chr2L 3892033 intron capu - chr2L_22_3890001 chr2L_3890001 RAL-395 132 chr2L 3936601 3936654 chr2L 3936705 3936760 9 105 6.0 2.0 4.0 1.8 159 chr2L 3936601 intron fred - chr2L 3936680 intron fred - chr2L 3936760 intron fred - chr2L_9_3935001 chr2L_3935001 RAL-395 133 chr2L 3997523 3997578 chr2L 3997640 3997691 11 115 0.0 7.0 3.5 2.4 168 chr2L 3997523 intergenic not near genes chr2L 3997607 intergenic not near genes chr2L 3997691 intergenic not near genes chr2L_11_3995001 chr2L_3995001 RAL-395 134 chr2L 4037777 4037809 chr2L 4037890 4037922 15 113 5.0 6.5 5.8 2.2 145 chr2L 4037777 intron ed + chr2L 4037850 intron ed + chr2L 4037922 intron ed + chr2L_15_4035001 chr2L_4035001 RAL-395 135 chr2L 4066017 4066046 chr2L 4068868 4068897 Juan 19 2850 9.5 12.0 10.8 1.6 2880 chr2L 4066017 intron ed + chr2L 4067457 intron ed + chr2L 4068897 intron ed + chr2L_19_4065001 chr2L_4065001 RAL-395 136 chr2L 4066051 4066056 chr2L 4068860 4068899 Juan 6 2841 6.5 11.0 8.8 0.6 2848 chr2L 4066051 intron ed + chr2L 4067475 intron ed + chr2L 4068899 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-395 137 chr2L 4125219 4125279 chr2L 4125350 4125410 29 131 0.5 3.0 1.8 10.4 191 chr2L 4125219 intergenic not near genes chr2L 4125314 intergenic not near genes chr2L 4125410 intergenic not near genes chr2L_29_4125001 chr2L_4125001 RAL-395 138 chr2L 4129653 4129667 chr2L 4129795 4129809 4 142 0.0 0.5 0.2 3.3 156 chr2L 4129653 intergenic not near genes chr2L 4129731 intergenic not near genes chr2L 4129809 intergenic not near genes chr2L_4_4125001 chr2L_4125001 RAL-395 139 chr2L 4138107 4138163 chr2L 4138213 4138270 24 107 9.0 7.0 8.0 2.7 163 chr2L 4138107 intergenic not near genes chr2L 4138188 intergenic not near genes chr2L 4138270 intergenic not near genes chr2L_24_4135001 chr2L_4135001 RAL-395 140 chr2L 4150619 4150657 chr2L 4150725 4150763 19 106 5.5 7.0 6.2 2.6 144 chr2L 4150619 exon CG2955 + chr2L 4150691 exon CG2955 + chr2L 4150763 exon CG2955 + chr2L_19_4150001 chr2L_4150001 RAL-395 141 chr2L 4159383 4159438 chr2L 4159609 4159664 19 226 4.5 8.5 6.5 2.5 281 chr2L 4159383 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159664 intergenic not near genes chr2L_19_4155001 chr2L_4155001 RAL-395 142 chr2L 4166350 4166410 chr2L 4166459 4166519 26 109 6.0 7.5 6.8 3.3 169 chr2L 4166350 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166519 intergenic Or24a - chr2L_26_4165001 chr2L_4165001 RAL-395 143 chr2L 4180101 4180118 chr2L 4180203 4180220 7 102 9.5 6.0 7.8 0.8 119 chr2L 4180101 intergenic not near genes chr2L 4180160 intergenic not near genes chr2L 4180220 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-395 144 chr2L 4181296 4181300 chr2L 4183954 4183958 Burdock 4 2658 7.0 25.0 16.0 0.2 2662 chr2L 4181296 intergenic not near genes chr2L 4182627 intergenic not near genes chr2L 4183958 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-395 145 chr2L 4184447 4184505 chr2L 4184792 4184850 22 345 4.0 5.5 4.8 3.8 403 chr2L 4184447 intergenic not near genes chr2L 4184648 intergenic not near genes chr2L 4184850 intergenic not near genes chr2L_22_4180001 chr2L_4180001 RAL-395 146 chr2L 4224396 4224422 chr2L 4224501 4224527 13 105 7.0 12.5 9.8 1.2 131 chr2L 4224396 intergenic CG3702 - chr2L 4224462 intergenic CG3702 - chr2L 4224527 intergenic CG3702 - chr2L_13_4220001 chr2L_4220001 RAL-395 147 chr2L 4293969 4294010 chr2L 4294087 4294128 20 117 10.0 7.0 8.5 2.1 159 chr2L 4293969 intron tutl + chr2L 4294048 intron tutl + chr2L 4294128 intron tutl + chr2L_20_4290001 chr2L_4290001 RAL-395 148 chr2L 4317875 4317913 chr2L 4317978 4318017 23 104 9.5 14.0 11.8 1.8 142 chr2L 4317875 intron tutl + chr2L 4317946 intron tutl + chr2L 4318017 intron tutl + chr2L_23_4315001 chr2L_4315001 RAL-395 149 chr2L 4601682 4601735 chr2L 4609149 4609200 mdg1 29 7466 8.0 6.0 7.0 3.6 7518 chr2L 4601682 intron dp - chr2L 4605441 intron dp - chr2L 4609200 intron dp - chr2L_29_4605001 chr2L_4605001 RAL-395 150 chr2L 4622399 4622451 chr2L 4622511 4622563 28 111 9.5 7.5 8.5 2.9 164 chr2L 4622399 intergenic not near genes chr2L 4622481 intergenic not near genes chr2L 4622563 intergenic not near genes chr2L_28_4620001 chr2L_4620001 RAL-395 151 chr2L 4661824 4661852 chr2L 4669430 4669458 opus 7 7606 5.0 9.5 7.2 0.9 7634 chr2L 4661824 intergenic not near genes chr2L 4665641 intergenic not near genes chr2L 4669458 intergenic not near genes chr2L_7_4665001 chr2L_4665001 RAL-395 152 chr2L 4701811 4701861 chr2L 4701979 4702029 23 167 7.0 3.5 5.2 3.7 218 chr2L 4701811 intron CG34351 + chr2L 4701920 intron CG34351 + chr2L 4702029 intron CG34351 + chr2L_23_4700001 chr2L_4700001 RAL-395 153 chr2L 4748671 4748723 chr2L 4748776 4748828 22 105 7.5 9.5 8.5 2.3 157 chr2L 4748671 intron CG15630 - chr2L 4748750 intron CG15630 - chr2L 4748828 intron CG15630 - chr2L_22_4745001 chr2L_4745001 RAL-395 154 chr2L 4789893 4789949 chr2L 4790002 4790059 33 109 6.5 5.0 5.8 4.9 166 chr2L 4789893 intron CG15630 - chr2L 4789976 intron CG15630 - chr2L 4790059 intron CG15630 - chr2L_33_4785001 chr2L_4785001 RAL-395 155 chr2L 4793283 4793322 chr2L 4793603 4793643 7 321 10.5 6.0 8.2 0.8 360 chr2L 4793283 intron CG15630 - chr2L 4793463 intron CG15630 - chr2L 4793643 exon CG15630 - chr2L_7_4790001 chr2L_4790001 RAL-395 156 chr2L 4819466 4819519 chr2L 4819615 4819668 22 148 5.5 9.0 7.2 2.7 202 chr2L 4819466 intergenic not near genes chr2L 4819567 intergenic not near genes chr2L 4819668 intergenic not near genes chr2L_22_4815001 chr2L_4815001 RAL-395 157 chr2L 4825687 4825739 chr2L 4825793 4825845 23 106 7.0 4.0 5.5 3.5 158 chr2L 4825687 exon CG15628 + chr2L 4825766 intron CG15628 + chr2L 4825845 intron CG15628 + chr2L_23_4825001 chr2L_4825001 RAL-395 158 chr2L 4849281 4849341 chr2L 4849390 4849450 42 108 12.5 7.5 10.0 3.8 169 chr2L 4849281 exon CG11927 + chr2L 4849366 3` UTR CG11927 + chr2L 4849450 3` UTR,3` UTR CG11927 +,mRpS2 - chr2L_42_4845001 chr2L_4845001 RAL-395 159 chr2L 4858438 4858476 chr2L 4858552 4858590 11 114 5.5 0.0 2.8 2.9 152 chr2L 4858438 intron pog + chr2L 4858514 intron pog + chr2L 4858590 intron pog + chr2L_11_4855001 chr2L_4855001 RAL-395 160 chr2L 4862266 4862308 chr2L 4862366 4862410 26 100 13.0 11.5 12.2 2.0 144 chr2L 4862266 intron pog + chr2L 4862338 intron pog + chr2L 4862410 intron pog + chr2L_26_4860001 chr2L_4860001 RAL-395 161 chr2L 4891628 4891684 chr2L 4891735 4891792 21 108 12.5 8.0 10.2 1.9 164 chr2L 4891628 intergenic CG15625 +,CG3036 + chr2L 4891710 intergenic CG3036 +,CG15625 + chr2L 4891792 intergenic CG3036 + chr2L_21_4890001 chr2L_4890001 RAL-395 162 chr2L 4918144 4918204 chr2L 4923243 4923341 jockey 19 5125 7.5 0.0 3.8 4.0 5197 chr2L 4918144 intron hoe1 - chr2L 4920742 intron hoe1 - chr2L 4923341 intron hoe1 - chr2L_19_4920001 chr2L_4920001 RAL-395 163 chr2L 4923237 4923246 chr2L 4923354 4923363 7 117 0.0 15.0 7.5 0.8 126 chr2L 4923237 intron hoe1 - chr2L 4923300 intron hoe1 - chr2L 4923363 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-395 164 chr2L 4925647 4925696 chr2L 4925752 4925801 12 105 6.0 3.5 4.8 2.1 154 chr2L 4925647 intron hoe1 - chr2L 4925724 intron hoe1 - chr2L 4925801 intron hoe1 - chr2L_12_4925001 chr2L_4925001 RAL-395 165 chr2L 4996066 4996117 chr2L 4996169 4996220 10 103 5.0 5.0 5.0 1.7 154 chr2L 4996066 intron Rtnl1 - chr2L 4996143 intron Rtnl1 - chr2L 4996220 intron Rtnl1 - chr2L_10_4995001 chr2L_4995001 RAL-395 166 chr2L 5005910 5005966 chr2L 5006016 5006072 29 106 6.5 6.5 6.5 3.9 162 chr2L 5005910 intron Rtnl1 - chr2L 5005991 intron Rtnl1 - chr2L 5006072 intron Rtnl1 - chr2L_29_5005001 chr2L_5005001 RAL-395 167 chr2L 5010874 5010876 chr2L 5010976 5010979 5 103 0.0 17.0 8.5 0.5 105 chr2L 5010874 intergenic CG31917 -,Tfb5 -,CG3887 + chr2L 5010926 5` UTR CG3887 + chr2L 5010979 5` UTR CG3887 + chr2L_5_5010001 chr2L_5010001 RAL-395 168 chr2L 5037980 5038030 chr2L 5038090 5038139 17 108 7.5 8.5 8.0 1.9 159 chr2L 5037980 5` UTR,5` UTR CG14042 +,SP555 + chr2L 5038060 5` UTR,5` UTR CG14042 +,SP555 + chr2L 5038139 exon,5` UTR CG14042 +,SP555 + chr2L_17_5035001 chr2L_5035001 RAL-395 169 chr2L 5117278 5117324 chr2L 5117385 5117432 33 108 6.0 8.0 7.0 4.1 154 chr2L 5117278 intron Msp300 + chr2L 5117355 intron Msp300 + chr2L 5117432 intron Msp300 + chr2L_33_5115001 chr2L_5115001 RAL-395 170 chr2L 5119040 5119042 chr2L 5119154 5119156 4 114 0.0 0.5 0.2 3.3 116 chr2L 5119040 intron Msp300 + chr2L 5119098 intron Msp300 + chr2L 5119156 intron Msp300 + chr2L_4_5115001 chr2L_5115001 RAL-395 171 chr2L 5120951 5121004 chr2L 5121070 5121124 27 120 9.5 1.5 5.5 4.2 173 chr2L 5120951 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121124 intron Msp300 + chr2L_27_5120001 chr2L_5120001 RAL-395 172 chr2L 5242936 5242937 chr2L 16217660 16217660 4 10974724 48.5 33.5 41.0 0.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_4_10730001 chr2L_10730001 RAL-395 173 chr2L 5262501 5262546 chr2L 5262604 5262649 29 101 8.5 9.0 8.8 3.0 148 chr2L 5262501 intron tkv - chr2L 5262575 intron tkv - chr2L 5262649 intron tkv - chr2L_29_5260001 chr2L_5260001 RAL-395 174 chr2L 5265747 5265795 chr2L 5265915 5265964 25 168 5.0 4.0 4.5 4.5 217 chr2L 5265747 intron,exon tkv -,Cyp4ac1 + chr2L 5265856 intron,3` UTR tkv -,Cyp4ac1 + chr2L 5265964 intron tkv - chr2L_25_5265001 chr2L_5265001 RAL-395 175 chr2L 5276698 5276732 chr2L 5276808 5276842 4 110 4.5 8.5 6.5 0.5 144 chr2L 5276698 exon Bsg25D - chr2L 5276770 intron Bsg25D - chr2L 5276842 intron Bsg25D - chr2L_4_5275001 chr2L_5275001 RAL-395 176 chr2L 5342748 5342798 chr2L 5345154 5345204 Doc 20 2406 10.0 10.0 10.0 1.8 2456 chr2L 5342748 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345204 intergenic not near genes chr2L_20_5340001 chr2L_5340001 RAL-395 177 chr2L 5401597 5401610 chr2L 5401699 5401712 7 101 6.5 0.0 3.2 1.7 115 chr2L 5401597 intergenic not near genes chr2L 5401654 intergenic not near genes chr2L 5401712 intergenic not near genes chr2L_7_5400001 chr2L_5400001 RAL-395 178 chr2L 5436511 5436542 chr2L 5436614 5436645 18 102 12.5 17.5 15.0 1.1 134 chr2L 5436511 3` UTR CR31647 - chr2L 5436578 3` UTR CR31647 - chr2L 5436645 3` UTR CR31647 - chr2L_18_5435001 chr2L_5435001 RAL-395 179 chr2L 5492533 5492538 chr2L 5492677 5492685 7 146 0.0 11.5 5.8 1.0 152 chr2L 5492533 intergenic not near genes chr2L 5492609 intergenic not near genes chr2L 5492685 intergenic not near genes chr2L_7_5490001 chr2L_5490001 RAL-395 180 chr2L 5500034 5500077 chr2L 5500146 5500189 26 112 5.0 13.5 9.2 2.5 155 chr2L 5500034 intergenic not near genes chr2L 5500112 intergenic not near genes chr2L 5500189 intergenic not near genes chr2L_26_5500001 chr2L_5500001 RAL-395 181 chr2L 5501423 5501470 chr2L 5501525 5501572 28 102 6.5 6.5 6.5 3.7 149 chr2L 5501423 intergenic not near genes chr2L 5501498 intergenic not near genes chr2L 5501572 intergenic not near genes chr2L_28_5500001 chr2L_5500001 RAL-395 182 chr2L 5594302 5594359 chr2L 5594420 5594472 11 113 6.5 0.0 3.2 2.6 170 chr2L 5594302 intergenic not near genes chr2L 5594387 intergenic not near genes chr2L 5594472 intergenic not near genes chr2L_11_5590001 chr2L_5590001 RAL-395 183 chr2L 5646671 5646678 chr2L 5646777 5646784 5 106 25.5 20.0 22.8 0.2 113 chr2L 5646671 intron CG31646 - chr2L 5646728 intron CG31646 - chr2L 5646784 intron CG31646 - chr2L_5_5645001 chr2L_5645001 RAL-395 184 chr2L 5666268 5666324 chr2L 5666382 5666440 19 115 7.5 7.0 7.2 2.3 172 chr2L 5666268 intron Hsp60C + chr2L 5666354 intron Hsp60C + chr2L 5666440 intron Hsp60C + chr2L_19_5665001 chr2L_5665001 RAL-395 185 chr2L 5676871 5676924 chr2L 5676993 5677046 39 121 5.0 6.5 5.8 5.7 175 chr2L 5676871 intergenic not near genes chr2L 5676958 intergenic not near genes chr2L 5677046 intergenic not near genes chr2L_39_5675001 chr2L_5675001 RAL-395 186 chr2L 5720241 5720258 chr2L 5720354 5720371 11 113 22.0 14.0 18.0 0.6 130 chr2L 5720241 intron CG11149 - chr2L 5720306 intron CG11149 - chr2L 5720371 intron CG11149 - chr2L_11_5720001 chr2L_5720001 RAL-395 187 chr2L 5720260 5720291 chr2L 5720349 5720404 22 110 12.0 12.0 12.0 1.7 144 chr2L 5720260 intron CG11149 - chr2L 5720332 intron CG11149 - chr2L 5720404 intron CG11149 - chr2L_22_5720001 chr2L_5720001 RAL-395 188 chr2L 5762423 5762472 chr2L 5762534 5762583 13 111 6.5 7.0 6.8 1.7 160 chr2L 5762423 intergenic CG11030 +,obst-E - chr2L 5762503 intergenic obst-E -,CG11030 + chr2L 5762583 3` UTR obst-E - chr2L_13_5760001 chr2L_5760001 RAL-395 189 chr2L 5827687 5827740 chr2L 5836721 5836774 roo 34 9033 8.5 11.0 9.8 3.1 9087 chr2L 5827687 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836774 intron TrissinR + chr2L_34_5830001 chr2L_5830001 RAL-395 190 chr2L 5878732 5878760 chr2L 5878834 5878862 23 102 15.0 9.0 12.0 1.8 130 chr2L 5878732 intron rau - chr2L 5878797 intron rau - chr2L 5878862 intron rau - chr2L_23_5875001 chr2L_5875001 RAL-395 191 chr2L 5878761 5878785 chr2L 5878829 5878887 14 99 9.0 10.0 9.5 1.3 126 chr2L 5878761 intron rau - chr2L 5878824 intron rau - chr2L 5878887 intron rau - chr2L_14_5875001 chr2L_5875001 RAL-395 192 chr2L 5946689 5946745 chr2L 5946798 5946854 29 109 7.5 9.5 8.5 3.1 165 chr2L 5946689 intron Gpdh + chr2L 5946772 intron Gpdh + chr2L 5946854 intron Gpdh + chr2L_29_5945001 chr2L_5945001 RAL-395 193 chr2L 6002421 6002463 chr2L 6002533 6002575 20 112 7.5 6.5 7.0 2.5 154 chr2L 6002421 3` UTR Tsp26A + chr2L 6002498 3` UTR Tsp26A + chr2L 6002575 3` UTR Tsp26A + chr2L_20_6000001 chr2L_6000001 RAL-395 194 chr2L 6100811 6100865 chr2L 6100921 6100975 14 110 7.0 1.5 4.2 2.7 164 chr2L 6100811 intron stai + chr2L 6100893 intron stai + chr2L 6100975 intron stai + chr2L_14_6100001 chr2L_6100001 RAL-395 195 chr2L 6106197 6106233 chr2L 6106313 6106349 9 116 7.0 4.5 5.8 1.3 152 chr2L 6106197 intron stai + chr2L 6106273 intron stai + chr2L 6106349 intron stai + chr2L_9_6105001 chr2L_6105001 RAL-395 196 chr2L 6108771 6108823 chr2L 6108879 6108930 20 107 3.5 8.5 6.0 2.9 159 chr2L 6108771 intron stai + chr2L 6108850 intron stai + chr2L 6108930 intron stai + chr2L_20_6105001 chr2L_6105001 RAL-395 197 chr2L 6130743 6130790 chr2L 6130854 6130900 8 111 2.5 0.0 1.2 3.6 157 chr2L 6130743 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130822 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130900 intergenic CG9222 +,CG42730 -,tectonic - chr2L_8_6130001 chr2L_6130001 RAL-395 198 chr2L 6136527 6136582 chr2L 6136650 6136705 16 123 2.5 4.0 3.2 3.8 178 chr2L 6136527 intergenic not near genes chr2L 6136616 intergenic not near genes chr2L 6136705 intergenic not near genes chr2L_16_6135001 chr2L_6135001 RAL-395 199 chr2L 6185416 6185472 chr2L 6185520 6185531 32 102 9.5 7.5 8.5 3.4 115 chr2L 6185416 intron CG34380 + chr2L 6185474 intron CG34380 + chr2L 6185531 intron CG34380 + chr2L_32_6185001 chr2L_6185001 RAL-395 200 chr2L 6227691 6227729 chr2L 6227801 6227839 26 110 7.0 11.0 9.0 2.6 148 chr2L 6227691 intergenic not near genes chr2L 6227765 intergenic not near genes chr2L 6227839 intergenic not near genes chr2L_26_6225001 chr2L_6225001 RAL-395 201 chr2L 6253593 6253633 chr2L 6253695 6253735 9 102 11.0 8.0 9.5 0.9 142 chr2L 6253593 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253735 intron Ddr + chr2L_9_6250001 chr2L_6250001 RAL-395 202 chr2L 6275552 6275612 chr2L 6276098 6276158 24 545 7.5 9.5 8.5 2.5 606 chr2L 6275552 intron Ddr + chr2L 6275855 intron Ddr + chr2L 6276158 intron Ddr + chr2L_24_6275001 chr2L_6275001 RAL-395 203 chr2L 6296382 6296392 chr2L 6296498 6296511 7 119 18.5 8.0 13.2 0.5 129 chr2L 6296382 intron Ddr + chr2L 6296446 intron Ddr + chr2L 6296511 intron Ddr + chr2L_7_6295001 chr2L_6295001 RAL-395 204 chr2L 6296393 6296438 chr2L 6296497 6296557 27 118 8.0 8.0 8.0 3.0 164 chr2L 6296393 intron Ddr + chr2L 6296475 intron Ddr + chr2L 6296557 intron Ddr + chr2L_27_6295001 chr2L_6295001 RAL-395 205 chr2L 6363124 6363182 chr2L 6366076 6366123 Burdock 27 2951 7.5 7.0 7.2 3.3 2999 chr2L 6363124 intergenic not near genes chr2L 6364624 intergenic not near genes chr2L 6366123 intergenic not near genes chr2L_27_6360001 chr2L_6360001 RAL-395 206 chr2L 6426832 6426882 chr2L 6445118 6445168 roo 42 18286 13.0 10.5 11.8 3.3 18336 chr2L 6426832 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445168 exon CG9527 - chr2L_42_6435001 chr2L_6435001 RAL-395 207 chr2L 6483595 6483775 chr2L 6483730 6483899 13 129 1.0 1.0 1.0 6.5 304 chr2L 6483595 exon DLP + chr2L 6483747 exon DLP + chr2L 6483899 exon DLP + chr2L_13_6480001 chr2L_6480001 RAL-395 208 chr2L 6511902 6511960 chr2L 6512144 6512202 32 240 9.0 6.5 7.8 3.6 300 chr2L 6511902 intron CG31637 + chr2L 6512052 intron CG31637 + chr2L 6512202 intron CG31637 + chr2L_32_6510001 chr2L_6510001 RAL-395 209 chr2L 6544346 6544395 chr2L 6544463 6544513 27 118 6.0 6.5 6.2 3.8 167 chr2L 6544346 intron eya - chr2L 6544430 intron eya - chr2L 6544513 intron eya - chr2L_27_6540001 chr2L_6540001 RAL-395 210 chr2L 6552477 6552484 chr2L 6552623 6552627 6 145 2.0 7.0 4.5 1.1 150 chr2L 6552477 intergenic CR44776 + chr2L 6552552 intergenic CR44776 + chr2L 6552627 intergenic CR44776 + chr2L_6_6550001 chr2L_6550001 RAL-395 211 chr2L 6590071 6590125 chr2L 6590175 6590229 25 102 5.0 2.0 3.5 5.6 158 chr2L 6590071 intron CG11319 - chr2L 6590150 intron CG11319 - chr2L 6590229 intron CG11319 - chr2L_25_6590001 chr2L_6590001 RAL-395 212 chr2L 6598090 6598146 chr2L 6599073 6599128 18 982 6.0 5.5 5.8 2.6 1038 chr2L 6598090 intron CG11319 - chr2L 6598609 intron CG11319 - chr2L 6599128 intron CG11319 - chr2L_18_6595001 chr2L_6595001 RAL-395 213 chr2L 6626863 6626866 chr2L 6626973 6626977 6 111 25.0 10.5 17.8 0.3 114 chr2L 6626863 intron Oatp26F - chr2L 6626920 intron Oatp26F - chr2L 6626977 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-395 214 chr2L 6626867 6626915 chr2L 6626972 6627008 27 110 8.5 10.5 9.5 2.6 141 chr2L 6626867 intron Oatp26F - chr2L 6626938 intron Oatp26F - chr2L 6627008 intron Oatp26F - chr2L_27_6625001 chr2L_6625001 RAL-395 215 chr2L 6655499 6655547 chr2L 6655887 6655935 31 386 7.0 8.0 7.5 3.6 436 chr2L 6655499 exon CG31633 - chr2L 6655717 exon CG31633 - chr2L 6655935 exon CG31633 - chr2L_31_6655001 chr2L_6655001 RAL-395 216 chr2L 6740744 6740755 chr2L 6740857 6740868 7 113 0.0 22.0 11.0 0.6 124 chr2L 6740744 intergenic not near genes chr2L 6740806 intergenic not near genes chr2L 6740868 intergenic not near genes chr2L_7_6740001 chr2L_6740001 RAL-395 217 chr2L 6799523 6799558 chr2L 6799634 6799671 8 114 4.5 5.0 4.8 1.4 148 chr2L 6799523 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799671 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-395 218 chr2L 6818102 6818135 chr2L 6818217 6818247 5 114 4.5 9.0 6.8 0.6 145 chr2L 6818102 intergenic not near genes chr2L 6818174 intergenic not near genes chr2L 6818247 intergenic not near genes chr2L_5_6815001 chr2L_6815001 RAL-395 219 chr2L 6836474 6836524 chr2L 6836582 6836631 18 107 7.5 6.5 7.0 2.2 157 chr2L 6836474 intron sens-2 + chr2L 6836552 intron sens-2 + chr2L 6836631 intron sens-2 + chr2L_18_6835001 chr2L_6835001 RAL-395 220 chr2L 6850361 6850400 chr2L 6850463 6850509 18 108 9.0 8.0 8.5 1.9 148 chr2L 6850361 intergenic not near genes chr2L 6850435 intergenic not near genes chr2L 6850509 intergenic not near genes chr2L_18_6850001 chr2L_6850001 RAL-395 221 chr2L 6851490 6851532 chr2L 6851591 6851634 15 102 4.0 0.0 2.0 5.0 144 chr2L 6851490 intergenic not near genes chr2L 6851562 intergenic not near genes chr2L 6851634 intergenic not near genes chr2L_15_6850001 chr2L_6850001 RAL-395 222 chr2L 6876752 6876806 chr2L 6882969 6883023 diver 20 6216 7.5 4.5 6.0 2.9 6271 chr2L 6876752 intron Nlg2 + chr2L 6879888 intron Nlg2 + chr2L 6883023 intron Nlg2 + chr2L_20_6875001 chr2L_6875001 RAL-395 223 chr2L 6891418 6891468 chr2L 6891542 6891592 22 124 6.0 2.5 4.2 4.2 174 chr2L 6891418 intron Nlg2 + chr2L 6891505 intron Nlg2 + chr2L 6891592 intron Nlg2 + chr2L_22_6890001 chr2L_6890001 RAL-395 224 chr2L 6949079 6949130 chr2L 6949186 6949237 14 107 5.0 1.0 3.0 3.5 158 chr2L 6949079 intergenic Gas41 -,ihog - chr2L 6949158 intergenic Gas41 -,ihog - chr2L 6949237 intergenic Gas41 -,ihog - chr2L_14_6945001 chr2L_6945001 RAL-395 225 chr2L 6969250 6969303 chr2L 6969356 6969409 22 103 7.0 12.0 9.5 2.1 159 chr2L 6969250 3` UTR snRNP-U1-70K - chr2L 6969330 3` UTR snRNP-U1-70K - chr2L 6969409 3` UTR snRNP-U1-70K - chr2L_22_6965001 chr2L_6965001 RAL-395 226 chr2L 7082877 7082889 chr2L 7082990 7083001 6 113 15.5 14.0 14.8 0.4 124 chr2L 7082877 intron Pvf2 - chr2L 7082939 intron Pvf2 - chr2L 7083001 intron Pvf2 - chr2L_6_7080001 chr2L_7080001 RAL-395 227 chr2L 7111728 7111790 chr2L 7111839 7111901 15 109 3.5 3.5 3.5 3.3 173 chr2L 7111728 intron Pvf3 - chr2L 7111814 intron Pvf3 - chr2L 7111901 intron Pvf3 - chr2L_15_7110001 chr2L_7110001 RAL-395 228 chr2L 7126834 7126872 chr2L 7126939 7126975 15 105 7.0 0.0 3.5 3.3 141 chr2L 7126834 intron Pvf3 - chr2L 7126904 intron Pvf3 - chr2L 7126975 intron Pvf3 - chr2L_15_7125001 chr2L_7125001 RAL-395 229 chr2L 7149967 7150012 chr2L 7150092 7150138 16 126 7.5 3.0 5.2 2.6 171 chr2L 7149967 intron Pvf3 - chr2L 7150052 intron Pvf3 - chr2L 7150138 intron Pvf3 - chr2L_16_7150001 chr2L_7150001 RAL-395 230 chr2L 7216816 7216839 chr2L 7216918 7216941 15 101 12.0 7.5 9.8 1.4 125 chr2L 7216816 intron CG13784 - chr2L 7216878 intron CG13784 - chr2L 7216941 intron CG13784 - chr2L_15_7215001 chr2L_7215001 RAL-395 231 chr2L 7217208 7217270 chr2L 7217339 7217401 26 131 7.0 10.5 8.8 2.7 193 chr2L 7217208 intron CG13784 - chr2L 7217304 intron CG13784 - chr2L 7217401 intron CG13784 - chr2L_26_7215001 chr2L_7215001 RAL-395 232 chr2L 7295971 7296025 chr2L 7296133 7296188 14 164 8.0 3.0 5.5 2.2 217 chr2L 7295971 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296188 intergenic not near genes chr2L_14_7295001 chr2L_7295001 RAL-395 233 chr2L 7325890 7325941 chr2L 7326000 7326051 23 109 9.5 5.5 7.5 2.7 161 chr2L 7325890 intergenic not near genes chr2L 7325970 intergenic not near genes chr2L 7326051 intergenic not near genes chr2L_23_7325001 chr2L_7325001 RAL-395 234 chr2L 7330247 7330289 chr2L 7330352 7330394 13 105 5.5 6.5 6.0 1.9 147 chr2L 7330247 intergenic not near genes chr2L 7330320 intergenic not near genes chr2L 7330394 intergenic not near genes chr2L_13_7330001 chr2L_7330001 RAL-395 235 chr2L 7343306 7343358 chr2L 7350448 7350499 roo 12 7141 3.5 9.0 6.2 1.7 7193 chr2L 7343306 intron Wnt6 + chr2L 7346902 intron Wnt6 + chr2L 7350499 intron Wnt6 + chr2L_12_7345001 chr2L_7345001 RAL-395 236 chr2L 7357495 7357554 chr2L 7357599 7357657 11 103 1.0 8.0 4.5 2.0 162 chr2L 7357495 intergenic not near genes chr2L 7357576 intergenic not near genes chr2L 7357657 intergenic not near genes chr2L_11_7355001 chr2L_7355001 RAL-395 237 chr2L 7377859 7377901 chr2L 7377982 7378024 15 123 1.0 2.5 1.8 5.4 165 chr2L 7377859 5` UTR ninaC + chr2L 7377942 intron ninaC + chr2L 7378024 intron ninaC + chr2L_15_7375001 chr2L_7375001 RAL-395 238 chr2L 7405748 7405808 chr2L 7405855 7405913 15 106 0.0 0.0 0.0 15.0 165 chr2L 7405748 exon CG5177 + chr2L 7405830 intron CG5177 + chr2L 7405913 intron CG5177 + chr2L_15_7405001 chr2L_7405001 RAL-395 239 chr2L 7406917 7406960 chr2L 7407050 7407093 6 133 0.0 0.0 0.0 6.0 176 chr2L 7406917 intron CG5177 + chr2L 7407005 intron CG5177 + chr2L 7407093 intron CG5177 + chr2L_6_7405001 chr2L_7405001 RAL-395 240 chr2L 7447766 7447819 chr2L 7447886 7447940 30 120 6.0 5.5 5.8 4.4 174 chr2L 7447766 5` UTR santa-maria - chr2L 7447853 5` UTR santa-maria - chr2L 7447940 5` UTR santa-maria - chr2L_30_7445001 chr2L_7445001 RAL-395 241 chr2L 7487577 7487631 chr2L 7487768 7487823 17 191 5.5 3.5 4.5 3.1 246 chr2L 7487577 intron Ziz - chr2L 7487700 intron Ziz - chr2L 7487823 intron Ziz - chr2L_17_7485001 chr2L_7485001 RAL-395 242 chr2L 7493406 7493421 chr2L 7493517 7493533 4 112 0.0 17.5 8.8 0.4 127 chr2L 7493406 intron Ziz - chr2L 7493470 intron Ziz - chr2L 7493533 intron Ziz - chr2L_4_7490001 chr2L_7490001 RAL-395 243 chr2L 7493647 7493699 chr2L 7493884 7493936 22 237 5.5 4.5 5.0 3.7 289 chr2L 7493647 intron Ziz - chr2L 7493792 intron Ziz - chr2L 7493936 intron Ziz - chr2L_22_7490001 chr2L_7490001 RAL-395 244 chr2L 7557052 7557104 chr2L 7557441 7557493 14 389 4.0 8.5 6.2 1.9 441 chr2L 7557052 intron RapGAP1 - chr2L 7557272 intron RapGAP1 - chr2L 7557493 intron RapGAP1 - chr2L_14_7555001 chr2L_7555001 RAL-395 245 chr2L 7766602 7766652 chr2L 7766704 7766747 17 101 10.5 6.0 8.2 1.8 145 chr2L 7766602 intergenic not near genes chr2L 7766674 intergenic not near genes chr2L 7766747 intergenic not near genes chr2L_17_7765001 chr2L_7765001 RAL-395 246 chr2L 7959015 7959073 chr2L 7960452 7960510 pogo 37 1436 6.5 9.5 8.0 4.1 1495 chr2L 7959015 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960510 intron Snoo - chr2L_37_7955001 chr2L_7955001 RAL-395 247 chr2L 7995702 7995762 chr2L 7995830 7995890 44 127 7.0 9.5 8.2 4.8 188 chr2L 7995702 intron,5` UTR CG7227 -,CR44996 + chr2L 7995796 exon,5` UTR CG7227 -,CR44996 + chr2L 7995890 exon,5` UTR CG7227 -,CR44996 + chr2L_44_7995001 chr2L_7995001 RAL-395 248 chr2L 8003002 8003111 chr2L 8003111 8003223 6 126 0.0 0.0 0.0 6.0 221 chr2L 8003002 intron Wwox - chr2L 8003112 intron Wwox - chr2L 8003223 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-395 249 chr2L 8013597 8013607 chr2L 8018825 8018836 copia 9 5230 14.5 0.0 7.2 1.1 5239 chr2L 8013597 intron Tg + chr2L 8016216 intron Tg + chr2L 8018836 intron Tg + chr2L_9_8015001 chr2L_8015001 RAL-395 250 chr2L 8018815 8018838 chr2L 8023625 8023648 Doc 11 4809 0.5 16.5 8.5 1.2 4833 chr2L 8018815 intron Tg + chr2L 8021232 intron Tg + chr2L 8023648 intron Tg + chr2L_11_8020001 chr2L_8020001 RAL-395 251 chr2L 8085276 8085330 chr2L 8085492 8085546 25 215 10.5 7.0 8.8 2.6 270 chr2L 8085276 intron Bsg + chr2L 8085411 intron Bsg + chr2L 8085546 intron Bsg + chr2L_25_8085001 chr2L_8085001 RAL-395 252 chr2L 8150403 8150455 chr2L 8150655 8150675 31 252 8.0 9.0 8.5 3.3 272 chr2L 8150403 intron,intron CG8552 -,CG43394 + chr2L 8150539 intron,intron CG8552 -,CG43394 + chr2L 8150675 intron,intron CG8552 -,CG43394 + chr2L_31_8150001 chr2L_8150001 RAL-395 253 chr2L 8151752 8151779 chr2L 8151885 8151912 13 133 6.0 4.0 5.0 2.2 160 chr2L 8151752 intron,intron CG8552 -,CG43394 + chr2L 8151832 intron,intron CG8552 -,CG43394 + chr2L 8151912 intron,intron CG8552 -,CG43394 + chr2L_13_8150001 chr2L_8150001 RAL-395 254 chr2L 8167122 8167180 chr2L 8167239 8167296 25 116 5.5 16.5 11.0 2.1 174 chr2L 8167122 intron Piezo + chr2L 8167209 intron Piezo + chr2L 8167296 intron Piezo + chr2L_25_8165001 chr2L_8165001 RAL-395 255 chr2L 8231943 8231957 chr2L 8232077 8232091 7 134 6.5 2.0 4.2 1.3 148 chr2L 8231943 intron Pvr - chr2L 8232017 intron Pvr - chr2L 8232091 intron Pvr - chr2L_7_8230001 chr2L_8230001 RAL-395 256 chr2L 8244713 8244749 chr2L 8244860 8244897 12 148 4.5 8.0 6.2 1.7 184 chr2L 8244713 intron CG8086 - chr2L 8244805 intron CG8086 - chr2L 8244897 intron CG8086 - chr2L_12_8240001 chr2L_8240001 RAL-395 257 chr2L 8286269 8286325 chr2L 8286382 8286438 39 112 11.5 10.0 10.8 3.3 169 chr2L 8286269 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286438 intron Btk29A - chr2L_39_8285001 chr2L_8285001 RAL-395 258 chr2L 8323670 8323727 chr2L 8323797 8323851 25 126 9.0 5.5 7.2 3.0 181 chr2L 8323670 intron CG7781 - chr2L 8323760 intron CG7781 - chr2L 8323851 intron CG7781 - chr2L_25_8320001 chr2L_8320001 RAL-395 259 chr2L 8336927 8336962 chr2L 8337031 8337067 16 104 0.0 11.5 5.8 2.4 140 chr2L 8336927 intergenic not near genes chr2L 8336997 intergenic not near genes chr2L 8337067 intergenic not near genes chr2L_16_8335001 chr2L_8335001 RAL-395 260 chr2L 8351536 8351588 chr2L 8351637 8351691 17 103 0.0 4.0 2.0 5.7 155 chr2L 8351536 intergenic CG7778 + chr2L 8351614 intergenic not near genes chr2L 8351691 intergenic Mur29B + chr2L_17_8350001 chr2L_8350001 RAL-395 261 chr2L 8452398 8452445 chr2L 8461595 8461642 roo 17 9195 8.0 9.5 8.8 1.7 9244 chr2L 8452398 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461642 intron fu12 - chr2L_17_8455001 chr2L_8455001 RAL-395 262 chr2L 8484389 8484441 chr2L 8484674 8484718 21 281 5.5 8.5 7.0 2.6 329 chr2L 8484389 intron d + chr2L 8484554 intron d + chr2L 8484718 intron d + chr2L_21_8480001 chr2L_8480001 RAL-395 263 chr2L 8510110 8510172 chr2L 8510225 8510287 22 115 6.0 5.0 5.5 3.4 177 chr2L 8510110 exon CG13096 - chr2L 8510198 intron CG13096 - chr2L 8510287 intron CG13096 - chr2L_22_8510001 chr2L_8510001 RAL-395 264 chr2L 8554344 8554392 chr2L 8554466 8554514 19 122 4.0 7.5 5.8 2.8 170 chr2L 8554344 intron Sema-1a + chr2L 8554429 intron Sema-1a + chr2L 8554514 intron Sema-1a + chr2L_19_8550001 chr2L_8550001 RAL-395 265 chr2L 8586256 8586314 chr2L 8586359 8586416 52 103 8.5 9.5 9.0 5.2 160 chr2L 8586256 intron Sema-1a + chr2L 8586336 intron Sema-1a + chr2L 8586416 intron Sema-1a + chr2L_52_8585001 chr2L_8585001 RAL-395 266 chr2L 8607530 8607551 chr2L 8607656 8607677 9 124 10.0 11.0 10.5 0.8 147 chr2L 8607530 intron Sema-1a + chr2L 8607604 intron Sema-1a + chr2L 8607677 intron Sema-1a + chr2L_9_8605001 chr2L_8605001 RAL-395 267 chr2L 8625480 8625528 chr2L 8625625 8625678 17 148 2.5 4.5 3.5 3.8 198 chr2L 8625480 intron Sema-1a + chr2L 8625579 intron Sema-1a + chr2L 8625678 intron Sema-1a + chr2L_17_8625001 chr2L_8625001 RAL-395 268 chr2L 8634493 8634552 chr2L 8634603 8634661 30 108 10.0 10.0 10.0 2.7 168 chr2L 8634493 intron Sema-1a + chr2L 8634577 intron Sema-1a + chr2L 8634661 intron Sema-1a + chr2L_30_8630001 chr2L_8630001 RAL-395 269 chr2L 8654213 8654244 chr2L 8654340 8654374 15 129 7.5 11.5 9.5 1.4 161 chr2L 8654213 intron Sema-1a + chr2L 8654294 intron Sema-1a + chr2L 8654374 intron Sema-1a + chr2L_15_8650001 chr2L_8650001 RAL-395 270 chr2L 8689682 8689732 chr2L 8689805 8689855 35 122 12.0 10.5 11.2 2.9 173 chr2L 8689682 intron Hnf4 - chr2L 8689768 intron Hnf4 - chr2L 8689855 exon Hnf4 - chr2L_35_8685001 chr2L_8685001 RAL-395 271 chr2L 8698300 8698346 chr2L 8698465 8698511 18 164 12.5 0.0 6.2 2.5 211 chr2L 8698300 intron Hnf4 - chr2L 8698406 intron Hnf4 - chr2L 8698511 intron Hnf4 - chr2L_18_8695001 chr2L_8695001 RAL-395 272 chr2L 8723091 8723144 chr2L 8731493 8731547 Tirant 19 8403 9.0 13.0 11.0 1.6 8456 chr2L 8723091 intron raw - chr2L 8727319 intron raw - chr2L 8731547 intron raw - chr2L_19_8725001 chr2L_8725001 RAL-395 273 chr2L 8736241 8736257 chr2L 8736347 8736363 9 106 0.0 8.5 4.2 1.7 122 chr2L 8736241 intron raw - chr2L 8736302 intron raw - chr2L 8736363 intron raw - chr2L_9_8735001 chr2L_8735001 RAL-395 274 chr2L 8759962 8759978 chr2L 8760129 8760145 8 166 11.0 0.0 5.5 1.2 183 chr2L 8759962 intergenic not near genes chr2L 8760054 intergenic not near genes chr2L 8760145 intergenic not near genes chr2L_8_8760001 chr2L_8760001 RAL-395 275 chr2L 8784680 8784724 chr2L 8784817 8784860 27 136 6.5 8.5 7.5 3.2 180 chr2L 8784680 intergenic not near genes chr2L 8784770 intergenic not near genes chr2L 8784860 intergenic not near genes chr2L_27_8780001 chr2L_8780001 RAL-395 276 chr2L 8786529 8786577 chr2L 8786642 8786690 28 112 0.5 14.0 7.2 3.4 161 chr2L 8786529 intergenic not near genes chr2L 8786610 intergenic not near genes chr2L 8786690 intergenic not near genes chr2L_28_8785001 chr2L_8785001 RAL-395 277 chr2L 8788726 8788789 chr2L 8788843 8788906 26 117 9.0 5.5 7.2 3.2 180 chr2L 8788726 intergenic not near genes chr2L 8788816 intergenic not near genes chr2L 8788906 intergenic not near genes chr2L_26_8785001 chr2L_8785001 RAL-395 278 chr2L 8799778 8799832 chr2L 8799920 8799974 32 142 6.0 10.5 8.2 3.5 196 chr2L 8799778 intergenic not near genes chr2L 8799876 intergenic not near genes chr2L 8799974 intergenic not near genes chr2L_32_8795001 chr2L_8795001 RAL-395 279 chr2L 8880037 8880072 chr2L 8880140 8880175 7 103 8.5 5.0 6.8 0.9 138 chr2L 8880037 intergenic not near genes chr2L 8880106 intergenic not near genes chr2L 8880175 intergenic not near genes chr2L_7_8880001 chr2L_8880001 RAL-395 280 chr2L 8891895 8891906 chr2L 8892001 8892012 4 106 2.0 11.0 6.5 0.5 117 chr2L 8891895 3` UTR CG42713 + chr2L 8891954 3` UTR CG42713 + chr2L 8892012 3` UTR CG42713 + chr2L_4_8890001 chr2L_8890001 RAL-395 281 chr2L 8910654 8910710 chr2L 8910762 8910818 30 107 7.5 8.5 8.0 3.3 164 chr2L 8910654 intron CG34398 + chr2L 8910736 intron CG34398 + chr2L 8910818 intron CG34398 + chr2L_30_8910001 chr2L_8910001 RAL-395 282 chr2L 9000253 9000308 chr2L 9007789 9007805 roo 22 7534 10.0 7.0 8.5 2.3 7552 chr2L 9000253 intergenic Try29F + chr2L 9004029 intergenic not near genes chr2L 9007805 intergenic not near genes chr2L_22_9000001 chr2L_9000001 RAL-395 283 chr2L 9025794 9025851 chr2L 9025904 9025961 35 109 12.5 10.5 11.5 2.8 167 chr2L 9025794 intron,3` UTR CG9582 -,CR44352 - chr2L 9025878 intron,3` UTR CG9582 -,CR44352 - chr2L 9025961 intron,3` UTR CG9582 -,CR44352 - chr2L_35_9025001 chr2L_9025001 RAL-395 284 chr2L 9042539 9042587 chr2L 9042672 9042707 5 125 0.0 9.5 4.8 0.9 168 chr2L 9042539 intergenic not near genes chr2L 9042623 intergenic not near genes chr2L 9042707 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-395 285 chr2L 9084336 9084340 chr2L 16217660 16217660 21 7133321 35.0 33.5 34.2 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_21_12650001 chr2L_12650001 RAL-395 286 chr2L 9113775 9113804 chr2L 9113910 9113940 11 136 7.0 4.0 5.5 1.7 165 chr2L 9113775 intergenic Or30a + chr2L 9113858 intergenic not near genes chr2L 9113940 intergenic not near genes chr2L_11_9110001 chr2L_9110001 RAL-395 287 chr2L 9148546 9148586 chr2L 9148668 9148709 7 123 7.5 4.0 5.8 1.0 163 chr2L 9148546 intron CG32982 + chr2L 9148628 intron CG32982 + chr2L 9148709 intron CG32982 + chr2L_7_9145001 chr2L_9145001 RAL-395 288 chr2L 9190950 9190960 chr2L 9191057 9191067 6 107 0.0 17.5 8.8 0.6 117 chr2L 9190950 intron tai + chr2L 9191008 intron tai + chr2L 9191067 intron tai + chr2L_6_9190001 chr2L_9190001 RAL-395 289 chr2L 9195847 9195882 chr2L 9195955 9195990 17 109 7.5 11.5 9.5 1.6 143 chr2L 9195847 intron tai + chr2L 9195918 intron tai + chr2L 9195990 intron tai + chr2L_17_9195001 chr2L_9195001 RAL-395 290 chr2L 9217948 9217978 chr2L 9222761 9222791 Doc 17 4813 8.0 9.5 8.8 1.7 4843 chr2L 9217948 intron tai + chr2L 9220370 intron tai + chr2L 9222791 intron tai + chr2L_17_9220001 chr2L_9220001 RAL-395 291 chr2L 9217979 9217996 chr2L 9222755 9222808 Doc 9 4808 5.5 8.5 7.0 1.1 4829 chr2L 9217979 intron tai + chr2L 9220394 intron tai + chr2L 9222808 intron tai + chr2L_9_9220001 chr2L_9220001 RAL-395 292 chr2L 9253940 9253994 chr2L 9254043 9254097 15 103 3.5 5.5 4.5 2.7 157 chr2L 9253940 intergenic lectin-30A - chr2L 9254018 intergenic lectin-30A - chr2L 9254097 3` UTR lectin-30A - chr2L_15_9250001 chr2L_9250001 RAL-395 293 chr2L 9297351 9297404 chr2L 9297454 9297507 30 101 4.5 9.5 7.0 3.8 156 chr2L 9297351 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297507 3` UTR Ggamma30A + chr2L_30_9295001 chr2L_9295001 RAL-395 294 chr2L 9300665 9300705 chr2L 9300787 9300827 7 122 2.0 6.0 4.0 1.4 162 chr2L 9300665 3` UTR Ggamma30A + chr2L 9300746 3` UTR Ggamma30A + chr2L 9300827 3` UTR Ggamma30A + chr2L_7_9300001 chr2L_9300001 RAL-395 295 chr2L 9304340 9304510 chr2L 9304450 9304615 32 107 6.0 6.5 6.2 4.4 275 chr2L 9304340 intergenic CR42844 - chr2L 9304478 3` UTR CR42844 - chr2L 9304615 3` UTR CR42844 - chr2L_32_9300001 chr2L_9300001 RAL-395 296 chr2L 9375814 9375864 chr2L 9377247 9377296 28 1432 10.0 9.5 9.8 2.6 1482 chr2L 9375814 intron Shawl - chr2L 9376555 intron Shawl - chr2L 9377296 intron Shawl - chr2L_28_9375001 chr2L_9375001 RAL-395 297 chr2L 9385094 9385149 chr2L 9385210 9385260 22 115 11.0 6.0 8.5 2.3 166 chr2L 9385094 intron Shawl - chr2L 9385177 intron Shawl - chr2L 9385260 intron Shawl - chr2L_22_9385001 chr2L_9385001 RAL-395 298 chr2L 9387224 9387274 chr2L 9387348 9387398 13 124 5.5 2.5 4.0 2.6 174 chr2L 9387224 intron Shawl - chr2L 9387311 intron Shawl - chr2L 9387398 intron,5` UTR Shawl -,Aldh + chr2L_13_9385001 chr2L_9385001 RAL-395 299 chr2L 9391511 9391566 chr2L 9391704 9391759 30 193 6.0 10.0 8.0 3.3 248 chr2L 9391511 intron,3` UTR Shawl -,Aldh + chr2L 9391635 intron Shawl - chr2L 9391759 intron Shawl - chr2L_30_9390001 chr2L_9390001 RAL-395 300 chr2L 9393472 9393526 chr2L 9396465 9396518 jockey 27 2993 6.5 11.0 8.8 2.8 3046 chr2L 9393472 intron Shawl - chr2L 9394995 intron Shawl - chr2L 9396518 intron Shawl - chr2L_27_9390001 chr2L_9390001 RAL-395 301 chr2L 9407883 9407906 chr2L 9407991 9408014 13 108 3.0 11.0 7.0 1.6 131 chr2L 9407883 intron Shawl - chr2L 9407948 intron Shawl - chr2L 9408014 intron Shawl - chr2L_13_9405001 chr2L_9405001 RAL-395 302 chr2L 9443052 9443094 chr2L 9443175 9443234 22 138 7.0 6.0 6.5 2.9 182 chr2L 9443052 intron numb + chr2L 9443143 intron numb + chr2L 9443234 intron numb + chr2L_22_9440001 chr2L_9440001 RAL-395 303 chr2L 9460730 9460784 chr2L 9460842 9460905 14 115 7.0 0.0 3.5 3.1 175 chr2L 9460730 exon numb + chr2L 9460818 intron numb + chr2L 9460905 intron numb + chr2L_14_9460001 chr2L_9460001 RAL-395 304 chr2L 9464855 9464968 chr2L 9464959 9465078 14 106 0.0 0.0 0.0 14.0 223 chr2L 9464855 intergenic not near genes chr2L 9464966 intergenic not near genes chr2L 9465078 intergenic not near genes chr2L_14_9460001 chr2L_9460001 RAL-395 305 chr2L 9470086 9470122 chr2L 9470189 9470227 21 105 3.5 8.5 6.0 3.0 141 chr2L 9470086 intergenic CR43769 + chr2L 9470156 intergenic CR43769 + chr2L 9470227 intergenic CR43769 + chr2L_21_9470001 chr2L_9470001 RAL-395 306 chr2L 9473033 9473072 chr2L 9473410 9473451 5 379 0.0 8.5 4.2 1.0 418 chr2L 9473033 intergenic not near genes chr2L 9473242 intergenic not near genes chr2L 9473451 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-395 307 chr2L 9474757 9474809 chr2L 9474877 9474929 16 120 3.0 3.0 3.0 4.0 172 chr2L 9474757 intergenic not near genes chr2L 9474843 intergenic not near genes chr2L 9474929 intergenic not near genes chr2L_16_9470001 chr2L_9470001 RAL-395 308 chr2L 9506341 9506358 chr2L 9506449 9506466 4 108 6.5 3.5 5.0 0.7 125 chr2L 9506341 intron CG33298 + chr2L 9506404 intron CG33298 + chr2L 9506466 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-395 309 chr2L 9529057 9529060 chr2L 9529196 9529199 4 139 15.0 21.5 18.2 0.2 142 chr2L 9529057 intron,exon Oatp30B +,CG31883 + chr2L 9529128 intron,exon Oatp30B +,CG31883 + chr2L 9529199 intron,exon Oatp30B +,CG31883 + chr2L_4_9525001 chr2L_9525001 RAL-395 310 chr2L 9543754 9543789 chr2L 9543857 9543893 8 103 0.0 10.0 5.0 1.3 139 chr2L 9543754 intergenic Cpr30B +,CG13113 + chr2L 9543824 intergenic Cpr30B +,CG13113 + chr2L 9543893 intergenic Cpr30B +,CG13113 + chr2L_8_9540001 chr2L_9540001 RAL-395 311 chr2L 9633803 9633815 chr2L 9633956 9633968 6 152 23.0 7.0 15.0 0.4 165 chr2L 9633803 intergenic Apoltp + chr2L 9633886 intergenic Apoltp + chr2L 9633968 intergenic Apoltp + chr2L_6_9630001 chr2L_9630001 RAL-395 312 chr2L 9633817 9633851 chr2L 9633955 9634004 21 152 11.5 6.5 9.0 2.1 187 chr2L 9633817 intergenic Apoltp + chr2L 9633910 intergenic Apoltp + chr2L 9634004 intergenic Apoltp + chr2L_21_9630001 chr2L_9630001 RAL-395 313 chr2L 9683667 9683716 chr2L 9683769 9683819 14 102 8.5 8.5 8.5 1.5 152 chr2L 9683667 3` UTR Pka-C1 - chr2L 9683743 3` UTR Pka-C1 - chr2L 9683819 3` UTR Pka-C1 - chr2L_14_9680001 chr2L_9680001 RAL-395 314 chr2L 9716856 9716862 chr2L 9716970 9716976 4 114 13.5 12.0 12.8 0.3 120 chr2L 9716856 3` UTR Nckx30C - chr2L 9716916 3` UTR Nckx30C - chr2L 9716976 3` UTR Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-395 315 chr2L 9716863 9716887 chr2L 9716968 9717001 13 113 5.5 11.5 8.5 1.4 138 chr2L 9716863 3` UTR Nckx30C - chr2L 9716932 3` UTR Nckx30C - chr2L 9717001 3` UTR Nckx30C - chr2L_13_9715001 chr2L_9715001 RAL-395 316 chr2L 9719759 9719776 chr2L 9719868 9719885 4 109 0.0 5.5 2.8 1.1 126 chr2L 9719759 intron Nckx30C - chr2L 9719822 intron Nckx30C - chr2L 9719885 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-395 317 chr2L 9730948 9730999 chr2L 9731057 9731108 21 109 10.0 4.5 7.2 2.6 160 chr2L 9730948 intron Nckx30C - chr2L 9731028 intron Nckx30C - chr2L 9731108 intron Nckx30C - chr2L_21_9730001 chr2L_9730001 RAL-395 318 chr2L 9797243 9797283 chr2L 9797356 9797396 25 112 8.5 8.5 8.5 2.6 153 chr2L 9797243 intron nAChRalpha6 - chr2L 9797320 intron nAChRalpha6 - chr2L 9797396 intron nAChRalpha6 - chr2L_25_9795001 chr2L_9795001 RAL-395 319 chr2L 9828417 9828422 chr2L 9828526 9828531 6 110 48.0 35.0 41.5 0.1 114 chr2L 9828417 intron nAChRalpha6 - chr2L 9828474 intron nAChRalpha6 - chr2L 9828531 intron nAChRalpha6 - chr2L_6_9825001 chr2L_9825001 RAL-395 320 chr2L 9828412 9828433 chr2L 9828532 9828546 7 112 44.5 35.5 40.0 0.2 134 chr2L 9828412 intron nAChRalpha6 - chr2L 9828479 intron nAChRalpha6 - chr2L 9828546 intron nAChRalpha6 - chr2L_7_9825001 chr2L_9825001 RAL-395 321 chr2L 9837406 9837447 chr2L 9837510 9837551 18 103 1.5 3.5 2.5 5.1 145 chr2L 9837406 intron nAChRalpha6 - chr2L 9837478 intron nAChRalpha6 - chr2L 9837551 intron nAChRalpha6 - chr2L_18_9835001 chr2L_9835001 RAL-395 322 chr2L 9861774 9861820 chr2L 9861878 9861924 20 103 7.5 5.5 6.5 2.7 150 chr2L 9861774 intron nAChRalpha6 - chr2L 9861849 intron nAChRalpha6 - chr2L 9861924 intron nAChRalpha6 - chr2L_20_9860001 chr2L_9860001 RAL-395 323 chr2L 9862340 9862355 chr2L 9862467 9862489 8 133 0.0 9.0 4.5 1.5 149 chr2L 9862340 intron nAChRalpha6 - chr2L 9862414 intron nAChRalpha6 - chr2L 9862489 intron nAChRalpha6 - chr2L_8_9860001 chr2L_9860001 RAL-395 324 chr2L 9864383 9864433 chr2L 9864490 9864540 36 106 4.5 7.0 5.8 5.3 157 chr2L 9864383 intron nAChRalpha6 - chr2L 9864462 intron nAChRalpha6 - chr2L 9864540 intron nAChRalpha6 - chr2L_36_9860001 chr2L_9860001 RAL-395 325 chr2L 9871498 9871534 chr2L 9871608 9871644 9 110 6.5 9.5 8.0 1.0 146 chr2L 9871498 intron nAChRalpha6 - chr2L 9871571 intron nAChRalpha6 - chr2L 9871644 intron nAChRalpha6 - chr2L_9_9870001 chr2L_9870001 RAL-395 326 chr2L 9892477 9892534 chr2L 9892579 9892636 18 102 3.5 10.0 6.8 2.3 159 chr2L 9892477 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892636 exon mtDNA-helicase - chr2L_18_9890001 chr2L_9890001 RAL-395 327 chr2L 9973705 9973736 chr2L 9980850 9980881 HMS-Beagle 14 7144 17.0 6.5 11.8 1.1 7176 chr2L 9973705 intergenic not near genes chr2L 9977293 intergenic not near genes chr2L 9980881 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-395 328 chr2L 9973737 9973758 chr2L 9980849 9980903 HMS-Beagle 13 7142 8.5 6.0 7.2 1.6 7166 chr2L 9973737 intergenic not near genes chr2L 9977320 intergenic not near genes chr2L 9980903 intergenic not near genes chr2L_13_9975001 chr2L_9975001 RAL-395 329 chr2L 9982197 9982230 chr2L 9982326 9982359 17 129 0.0 11.5 5.8 2.5 162 chr2L 9982197 intergenic not near genes chr2L 9982278 intergenic not near genes chr2L 9982359 intergenic not near genes chr2L_17_9980001 chr2L_9980001 RAL-395 330 chr2L 9986328 9986381 chr2L 9986449 9986488 22 119 4.5 12.0 8.2 2.4 160 chr2L 9986328 intron bib + chr2L 9986408 intron bib + chr2L 9986488 intron bib + chr2L_22_9985001 chr2L_9985001 RAL-395 331 chr2L 10051698 10051750 chr2L 10051809 10051861 32 109 9.5 4.5 7.0 4.0 163 chr2L 10051698 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051861 5` UTR CR44874 + chr2L_32_10050001 chr2L_10050001 RAL-395 332 chr2L 10078102 10078154 chr2L 10078285 10078337 27 184 7.0 7.0 7.0 3.4 235 chr2L 10078102 intron CG44153 - chr2L 10078220 intron CG44153 - chr2L 10078337 intron CG44153 - chr2L_27_10075001 chr2L_10075001 RAL-395 333 chr2L 10087451 10087488 chr2L 10087552 10087591 20 103 12.5 11.0 11.8 1.6 140 chr2L 10087451 intron CG44153 - chr2L 10087521 intron CG44153 - chr2L 10087591 intron CG44153 - chr2L_20_10085001 chr2L_10085001 RAL-395 334 chr2L 10120971 10120987 chr2L 10121079 10121095 11 108 17.5 4.5 11.0 0.9 124 chr2L 10120971 intron,intron CG44153 -,CG34109 + chr2L 10121033 intron,intron CG44153 -,CG34109 + chr2L 10121095 intron,intron CG44153 -,CG34109 + chr2L_11_10120001 chr2L_10120001 RAL-395 335 chr2L 10138166 10138186 chr2L 10143436 10143456 Rt1c 13 5270 12.0 20.0 16.0 0.8 5290 chr2L 10138166 intron CG44153 - chr2L 10140811 intron CG44153 - chr2L 10143456 intron CG44153 - chr2L_13_10140001 chr2L_10140001 RAL-395 336 chr2L 10156297 10156354 chr2L 10163791 10163843 blood 29 7495 8.0 10.0 9.0 2.9 7546 chr2L 10156297 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163843 intron CG44153 - chr2L_29_10160001 chr2L_10160001 RAL-395 337 chr2L 10176023 10176024 chr2L 16071771 16071771 4 5895748 49.0 32.5 40.8 0.1 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-395 338 chr2L 10177881 10177928 chr2L 10177987 10178034 17 106 6.0 13.0 9.5 1.6 153 chr2L 10177881 intron CG44153 - chr2L 10177958 intron CG44153 - chr2L 10178034 intron CG44153 - chr2L_17_10175001 chr2L_10175001 RAL-395 339 chr2L 10209822 10209855 chr2L 10209925 10209935 13 101 8.5 2.5 5.5 2.0 113 chr2L 10209822 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209878 3` UTR CG5727 - chr2L 10209935 3` UTR CG5727 - chr2L_13_10205001 chr2L_10205001 RAL-395 340 chr2L 10230517 10230571 chr2L 10230646 10230701 21 130 8.5 4.0 6.2 2.9 184 chr2L 10230517 intron CG5694 - chr2L 10230609 intron CG5694 - chr2L 10230701 intron CG5694 - chr2L_21_10230001 chr2L_10230001 RAL-395 341 chr2L 10258413 10258439 chr2L 10258524 10258550 17 111 4.5 6.5 5.5 2.6 137 chr2L 10258413 intron Pten - chr2L 10258482 intron Pten - chr2L 10258550 exon Pten - chr2L_17_10255001 chr2L_10255001 RAL-395 342 chr2L 10281649 10281682 chr2L 10281770 10281814 8 122 0.0 4.0 2.0 2.7 165 chr2L 10281649 intergenic CG5604 - chr2L 10281732 intergenic CG5604 - chr2L 10281814 intergenic CG5604 - chr2L_8_10280001 chr2L_10280001 RAL-395 343 chr2L 10294655 10294682 chr2L 10294767 10294794 11 112 5.5 5.5 5.5 1.7 139 chr2L 10294655 intron Hand - chr2L 10294724 intron Hand - chr2L 10294794 intron Hand - chr2L_11_10290001 chr2L_10290001 RAL-395 344 chr2L 10348359 10348402 chr2L 10348468 10348507 9 108 8.5 0.0 4.2 1.7 148 chr2L 10348359 intron CG34367 - chr2L 10348433 intron CG34367 - chr2L 10348507 intron CG34367 - chr2L_9_10345001 chr2L_10345001 RAL-395 345 chr2L 10447075 10447088 chr2L 10447210 10447224 9 135 6.0 12.0 9.0 0.9 149 chr2L 10447075 intron loh + chr2L 10447150 intron loh + chr2L 10447224 intron loh + chr2L_9_10445001 chr2L_10445001 RAL-395 346 chr2L 10458079 10458100 chr2L 10458366 10458387 17 286 5.0 0.5 2.8 4.5 308 chr2L 10458079 intron LM408 + chr2L 10458233 intron LM408 + chr2L 10458387 intron LM408 + chr2L_17_10455001 chr2L_10455001 RAL-395 347 chr2L 10474357 10474414 chr2L 10474464 10474521 21 106 5.5 1.0 3.2 5.0 164 chr2L 10474357 intergenic RluA-1 - chr2L 10474439 intergenic RluA-1 - chr2L 10474521 intergenic RluA-1 - chr2L_21_10470001 chr2L_10470001 RAL-395 348 chr2L 10478499 10478552 chr2L 10478608 10478661 23 108 6.0 9.0 7.5 2.7 162 chr2L 10478499 intron RluA-2 + chr2L 10478580 intron RluA-2 + chr2L 10478661 intron RluA-2 + chr2L_23_10475001 chr2L_10475001 RAL-395 349 chr2L 10495418 10495463 chr2L 10495529 10495575 23 112 3.0 4.5 3.8 4.8 157 chr2L 10495418 intron Myo31DF - chr2L 10495496 intron Myo31DF - chr2L 10495575 intron Myo31DF - chr2L_23_10495001 chr2L_10495001 RAL-395 350 chr2L 10515333 10515389 chr2L 10515452 10515508 33 118 8.0 6.5 7.2 4.0 175 chr2L 10515333 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515508 intron,intron CG45083 -,Fatp - chr2L_33_10515001 chr2L_10515001 RAL-395 351 chr2L 10572677 10572730 chr2L 10572784 10572837 27 107 13.5 9.5 11.5 2.2 160 chr2L 10572677 intron Trim9 + chr2L 10572757 intron Trim9 + chr2L 10572837 intron Trim9 + chr2L_27_10570001 chr2L_10570001 RAL-395 352 chr2L 10580767 10580822 chr2L 10580874 10580929 34 105 5.5 6.5 6.0 4.9 162 chr2L 10580767 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580929 intron Trim9 + chr2L_34_10580001 chr2L_10580001 RAL-395 353 chr2L 10592817 10592872 chr2L 10600504 10600560 opus 14 7687 5.5 7.0 6.2 1.9 7743 chr2L 10592817 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600560 intron Trim9 + chr2L_14_10595001 chr2L_10595001 RAL-395 354 chr2L 10685570 10685625 chr2L 10685679 10685734 28 109 3.5 7.5 5.5 4.3 164 chr2L 10685570 intergenic not near genes chr2L 10685652 intergenic CG7296 - chr2L 10685734 intergenic CG7296 - chr2L_28_10685001 chr2L_10685001 RAL-395 355 chr2L 10688534 10688572 chr2L 10688636 10688674 21 102 4.0 9.5 6.8 2.7 140 chr2L 10688534 intergenic CG7294 - chr2L 10688604 intergenic CG7294 - chr2L 10688674 intergenic CG7294 - chr2L_21_10685001 chr2L_10685001 RAL-395 356 chr2L 10703291 10703347 chr2L 10703405 10703461 29 114 6.5 11.5 9.0 2.9 170 chr2L 10703291 intron Lip2 - chr2L 10703376 intron Lip2 - chr2L 10703461 intron Lip2 - chr2L_29_10700001 chr2L_10700001 RAL-395 357 chr2L 10723517 10723534 chr2L 10723637 10723654 9 119 5.5 2.5 4.0 1.8 137 chr2L 10723517 intergenic not near genes chr2L 10723586 intergenic not near genes chr2L 10723654 intergenic not near genes chr2L_9_10720001 chr2L_10720001 RAL-395 358 chr2L 10770662 10770712 chr2L 10770764 10770815 21 103 3.5 4.5 4.0 4.2 153 chr2L 10770662 intergenic CG17127 + chr2L 10770738 intergenic CG17127 + chr2L 10770815 intergenic CG17127 + chr2L_21_10770001 chr2L_10770001 RAL-395 359 chr2L 10787999 10788030 chr2L 10788101 10788132 5 102 0.0 12.0 6.0 0.7 133 chr2L 10787999 intron CG31869 - chr2L 10788066 intron CG31869 - chr2L 10788132 intron CG31869 - chr2L_5_10785001 chr2L_10785001 RAL-395 360 chr2L 10850122 10850177 chr2L 10850243 10850298 20 120 8.5 4.0 6.2 2.8 176 chr2L 10850122 5` UTR porin - chr2L 10850210 5` UTR,5` UTR porin -,CG43129 + chr2L 10850298 5` UTR,intron porin -,CG43129 + chr2L_20_10850001 chr2L_10850001 RAL-395 361 chr2L 10873025 10873080 chr2L 10873131 10873186 38 104 10.5 13.5 12.0 2.9 161 chr2L 10873025 intergenic not near genes chr2L 10873106 intergenic not near genes chr2L 10873186 intergenic not near genes chr2L_38_10870001 chr2L_10870001 RAL-395 362 chr2L 10876549 10876576 chr2L 10883631 10883662 297 4 7085 6.5 0.5 3.5 0.9 7113 chr2L 10876549 intergenic not near genes chr2L 10880106 intergenic not near genes chr2L 10883662 intergenic not near genes chr2L_4_10880001 chr2L_10880001 RAL-395 363 chr2L 10946929 10946937 chr2L 10956169 10956177 roo 8 9240 28.0 12.0 20.0 0.4 9248 chr2L 10946929 intron dpr2 - chr2L 10951553 intron dpr2 - chr2L 10956177 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-395 364 chr2L 10946938 10946971 chr2L 10956165 10956212 roo 18 9238 16.0 10.0 13.0 1.3 9274 chr2L 10946938 intron dpr2 - chr2L 10951575 intron dpr2 - chr2L 10956212 intron dpr2 - chr2L_18_10950001 chr2L_10950001 RAL-395 365 chr2L 11043242 11043299 chr2L 11043493 11043548 24 252 8.0 8.5 8.2 2.6 306 chr2L 11043242 intron Samuel - chr2L 11043395 intron Samuel - chr2L 11043548 intron Samuel - chr2L_24_11040001 chr2L_11040001 RAL-395 366 chr2L 11228175 11228205 chr2L 11228278 11228308 16 103 8.5 14.0 11.2 1.3 133 chr2L 11228175 intron ab + chr2L 11228242 intron ab + chr2L 11228308 intron ab + chr2L_16_11225001 chr2L_11225001 RAL-395 367 chr2L 11298812 11298851 chr2L 11298915 11298954 12 103 6.0 0.5 3.2 2.9 142 chr2L 11298812 intergenic not near genes chr2L 11298883 intergenic not near genes chr2L 11298954 intergenic not near genes chr2L_12_11295001 chr2L_11295001 RAL-395 368 chr2L 11315243 11315272 chr2L 11317673 11317700 G2 18 2430 7.5 10.5 9.0 1.8 2457 chr2L 11315243 intergenic not near genes chr2L 11316472 intergenic not near genes chr2L 11317700 intergenic not near genes chr2L_18_11315001 chr2L_11315001 RAL-395 369 chr2L 11339888 11339941 chr2L 11339990 11340042 28 101 7.0 6.0 6.5 3.7 154 chr2L 11339888 intergenic not near genes chr2L 11339965 intergenic not near genes chr2L 11340042 intergenic not near genes chr2L_28_11335001 chr2L_11335001 RAL-395 370 chr2L 11350607 11350657 chr2L 11350709 11350759 20 102 1.5 7.0 4.2 3.8 152 chr2L 11350607 intergenic not near genes chr2L 11350683 intergenic not near genes chr2L 11350759 intergenic not near genes chr2L_20_11350001 chr2L_11350001 RAL-395 371 chr2L 11356381 11356422 chr2L 11356518 11356546 18 135 6.0 4.5 5.2 2.9 165 chr2L 11356381 intergenic not near genes chr2L 11356464 intergenic not near genes chr2L 11356546 intergenic not near genes chr2L_18_11355001 chr2L_11355001 RAL-395 372 chr2L 11357960 11358012 chr2L 11358064 11358116 25 104 8.5 4.5 6.5 3.3 156 chr2L 11357960 intergenic not near genes chr2L 11358038 intergenic not near genes chr2L 11358116 intergenic not near genes chr2L_25_11355001 chr2L_11355001 RAL-395 373 chr2L 11374887 11374930 chr2L 11375009 11375063 25 125 10.0 8.5 9.2 2.5 176 chr2L 11374887 intergenic not near genes chr2L 11374975 intergenic not near genes chr2L 11375063 intergenic not near genes chr2L_25_11370001 chr2L_11370001 RAL-395 374 chr2L 11399520 11399535 chr2L 11399623 11399638 7 103 8.0 0.0 4.0 1.4 118 chr2L 11399520 intergenic not near genes chr2L 11399579 intergenic not near genes chr2L 11399638 intergenic not near genes chr2L_7_11395001 chr2L_11395001 RAL-395 375 chr2L 11404772 11404812 chr2L 11404874 11404914 21 102 2.0 12.5 7.2 2.6 142 chr2L 11404772 intergenic not near genes chr2L 11404843 intergenic not near genes chr2L 11404914 intergenic not near genes chr2L_21_11400001 chr2L_11400001 RAL-395 376 chr2L 11418629 11418688 chr2L 11418734 11418792 23 105 3.5 3.0 3.2 5.5 163 chr2L 11418629 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418792 intergenic not near genes chr2L_23_11415001 chr2L_11415001 RAL-395 377 chr2L 11458920 11458969 chr2L 11459062 11459111 16 142 10.0 6.0 8.0 1.8 191 chr2L 11458920 intergenic not near genes chr2L 11459016 intergenic not near genes chr2L 11459111 intergenic not near genes chr2L_16_11455001 chr2L_11455001 RAL-395 378 chr2L 11467958 11468017 chr2L 11468277 11468331 20 318 2.5 6.5 4.5 3.6 373 chr2L 11467958 intergenic not near genes chr2L 11468144 intergenic not near genes chr2L 11468331 intergenic not near genes chr2L_20_11465001 chr2L_11465001 RAL-395 379 chr2L 11491113 11491157 chr2L 11491220 11491263 24 106 6.0 7.5 6.8 3.1 150 chr2L 11491113 intergenic not near genes chr2L 11491188 intergenic not near genes chr2L 11491263 intergenic not near genes chr2L_24_11490001 chr2L_11490001 RAL-395 380 chr2L 11492987 11492996 chr2L 11493153 11493162 7 166 0.0 4.0 2.0 2.3 175 chr2L 11492987 intergenic not near genes chr2L 11493074 intergenic not near genes chr2L 11493162 intergenic not near genes chr2L_7_11490001 chr2L_11490001 RAL-395 381 chr2L 11537186 11537206 chr2L 11537287 11537310 4 103 6.0 20.5 13.2 0.3 124 chr2L 11537186 intergenic CG43438 + chr2L 11537248 intergenic CG43438 + chr2L 11537310 intergenic CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-395 382 chr2L 11540563 11540608 chr2L 11547994 11548036 Tabor 5 7429 3.5 6.5 5.0 0.8 7473 chr2L 11540563 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548036 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-395 383 chr2L 11563622 11563663 chr2L 11568851 11568893 copia 26 5230 12.5 12.0 12.2 2.0 5271 chr2L 11563622 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568893 intergenic not near genes chr2L_26_11565001 chr2L_11565001 RAL-395 384 chr2L 11571747 11571792 chr2L 11571869 11571885 21 117 9.0 8.0 8.5 2.2 138 chr2L 11571747 intergenic not near genes chr2L 11571816 intergenic not near genes chr2L 11571885 intergenic not near genes chr2L_21_11570001 chr2L_11570001 RAL-395 385 chr2L 11571794 11571798 chr2L 11571868 11571882 14 105 8.5 8.0 8.2 1.5 88 chr2L 11571794 intergenic not near genes chr2L 11571838 intergenic not near genes chr2L 11571882 intergenic not near genes chr2L_14_11570001 chr2L_11570001 RAL-395 386 chr2L 11610519 11610576 chr2L 11610624 11610680 12 104 4.5 5.0 4.8 2.1 161 chr2L 11610519 intron,3` UTR kek2 +,spag4 - chr2L 11610600 intron,3` UTR kek2 +,spag4 - chr2L 11610680 intron,exon kek2 +,spag4 - chr2L_12_11610001 chr2L_11610001 RAL-395 387 chr2L 11614031 11614042 chr2L 11615551 11615563 hopper2 7 1520 14.0 4.5 9.2 0.7 1532 chr2L 11614031 intron kek2 + chr2L 11614797 intron kek2 + chr2L 11615563 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-395 388 chr2L 11614045 11614084 chr2L 11615546 11615605 hopper2 25 1514 7.0 4.0 5.5 3.8 1560 chr2L 11614045 intron kek2 + chr2L 11614825 intron kek2 + chr2L 11615605 intron kek2 + chr2L_25_11610001 chr2L_11610001 RAL-395 389 chr2L 11704613 11704660 chr2L 11704711 11704762 8 101 6.0 5.5 5.8 1.2 149 chr2L 11704613 intergenic not near genes chr2L 11704688 intergenic not near genes chr2L 11704762 intergenic not near genes chr2L_8_11700001 chr2L_11700001 RAL-395 390 chr2L 11713481 11713537 chr2L 11720975 11721031 blood 29 7493 7.5 9.5 8.5 3.1 7550 chr2L 11713481 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721031 intergenic CR44143 + chr2L_29_11715001 chr2L_11715001 RAL-395 391 chr2L 11750300 11750340 chr2L 11750612 11750652 22 312 6.5 8.0 7.2 2.7 352 chr2L 11750300 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750652 intergenic not near genes chr2L_22_11750001 chr2L_11750001 RAL-395 392 chr2L 11825688 11825691 chr2L 11825793 11825796 5 105 13.0 0.0 6.5 0.7 108 chr2L 11825688 intron Pde1c - chr2L 11825742 intron Pde1c - chr2L 11825796 intron Pde1c - chr2L_5_11825001 chr2L_11825001 RAL-395 393 chr2L 11886428 11886450 chr2L 11886552 11886575 14 124 13.0 10.5 11.8 1.1 147 chr2L 11886428 intron Pde1c - chr2L 11886502 intron Pde1c - chr2L 11886575 intron Pde1c - chr2L_14_11885001 chr2L_11885001 RAL-395 394 chr2L 11889398 11889449 chr2L 11889767 11889818 29 368 4.5 5.5 5.0 4.8 420 chr2L 11889398 intron Pde1c - chr2L 11889608 intron Pde1c - chr2L 11889818 intron Pde1c - chr2L_29_11885001 chr2L_11885001 RAL-395 395 chr2L 11892525 11892561 chr2L 11892640 11892676 17 115 5.5 9.5 7.5 2.0 151 chr2L 11892525 intron Pde1c - chr2L 11892600 intron Pde1c - chr2L 11892676 intron Pde1c - chr2L_17_11890001 chr2L_11890001 RAL-395 396 chr2L 11951945 11951996 chr2L 11952059 11952110 25 113 5.5 3.5 4.5 4.5 165 chr2L 11951945 intergenic CR43314 - chr2L 11952028 intergenic CR43314 - chr2L 11952110 intergenic CR43314 - chr2L_25_11950001 chr2L_11950001 RAL-395 397 chr2L 12067308 12067354 chr2L 12074386 12074432 297 8 7078 8.0 4.5 6.2 1.1 7124 chr2L 12067308 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074432 intergenic not near genes chr2L_8_12070001 chr2L_12070001 RAL-395 398 chr2L 12082104 12082155 chr2L 12082223 12082274 31 118 6.0 8.0 7.0 3.9 170 chr2L 12082104 intergenic CR44590 - chr2L 12082189 intergenic CR44590 - chr2L 12082274 intergenic CR44590 - chr2L_31_12080001 chr2L_12080001 RAL-395 399 chr2L 12153909 12153959 chr2L 12154012 12154062 29 102 10.5 3.0 6.8 3.7 153 chr2L 12153909 exon CG31760 + chr2L 12153986 intron CG31760 + chr2L 12154062 intron CG31760 + chr2L_29_12150001 chr2L_12150001 RAL-395 400 chr2L 12192333 12192366 chr2L 12192483 12192516 18 151 11.5 5.5 8.5 1.9 183 chr2L 12192333 intron aret + chr2L 12192424 intron aret + chr2L 12192516 intron aret + chr2L_18_12190001 chr2L_12190001 RAL-395 401 chr2L 12210020 12210041 chr2L 12210135 12210156 12 114 5.5 6.5 6.0 1.7 136 chr2L 12210020 intron aret + chr2L 12210088 intron aret + chr2L 12210156 intron aret + chr2L_12_12210001 chr2L_12210001 RAL-395 402 chr2L 12232591 12232632 chr2L 12232710 12232751 16 117 3.0 5.0 4.0 3.2 160 chr2L 12232591 intron aret + chr2L 12232671 intron aret + chr2L 12232751 intron aret + chr2L_16_12230001 chr2L_12230001 RAL-395 403 chr2L 12254000 12254028 chr2L 12254118 12254146 15 118 11.0 0.0 5.5 2.3 146 chr2L 12254000 intron aret + chr2L 12254073 intron aret + chr2L 12254146 intron aret + chr2L_15_12250001 chr2L_12250001 RAL-395 404 chr2L 12269388 12269401 chr2L 12269492 12269505 5 104 6.0 8.5 7.2 0.6 117 chr2L 12269388 intron aret + chr2L 12269446 intron aret + chr2L 12269505 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-395 405 chr2L 12272139 12272196 chr2L 12272239 12272298 21 101 7.5 5.5 6.5 2.8 159 chr2L 12272139 intron aret + chr2L 12272218 intron aret + chr2L 12272298 intron aret + chr2L_21_12270001 chr2L_12270001 RAL-395 406 chr2L 12317607 12317667 chr2L 12317710 12317770 23 102 9.5 7.5 8.5 2.4 163 chr2L 12317607 intergenic CR45283 - chr2L 12317688 intergenic CR45283 - chr2L 12317770 intergenic CR45283 - chr2L_23_12315001 chr2L_12315001 RAL-395 407 chr2L 12340753 12340810 chr2L 12340873 12340931 37 121 7.0 7.0 7.0 4.6 178 chr2L 12340753 intergenic not near genes chr2L 12340842 intergenic not near genes chr2L 12340931 intergenic not near genes chr2L_37_12340001 chr2L_12340001 RAL-395 408 chr2L 12366837 12366887 chr2L 12366948 12366999 25 111 4.5 4.5 4.5 4.5 162 chr2L 12366837 intron bru-2 + chr2L 12366918 intron bru-2 + chr2L 12366999 intron bru-2 + chr2L_25_12365001 chr2L_12365001 RAL-395 409 chr2L 12387893 12387947 chr2L 12388021 12388076 30 127 7.5 8.5 8.0 3.3 183 chr2L 12387893 intron bru-2 + chr2L 12387984 intron bru-2 + chr2L 12388076 intron bru-2 + chr2L_30_12385001 chr2L_12385001 RAL-395 410 chr2L 12394968 12394997 chr2L 12395100 12395135 15 138 3.5 4.5 4.0 3.0 167 chr2L 12394968 intron bru-2 + chr2L 12395052 intron bru-2 + chr2L 12395135 intron bru-2 + chr2L_15_12395001 chr2L_12395001 RAL-395 411 chr2L 12413818 12413850 chr2L 12414085 12414117 5 267 7.5 0.0 3.8 1.0 299 chr2L 12413818 intron vir-1 - chr2L 12413968 intron vir-1 - chr2L 12414117 intron vir-1 - chr2L_5_12410001 chr2L_12410001 RAL-395 412 chr2L 12420943 12420998 chr2L 12421300 12421355 19 357 10.5 6.0 8.2 2.1 412 chr2L 12420943 intron vir-1 - chr2L 12421149 intron vir-1 - chr2L 12421355 intron vir-1 - chr2L_19_12420001 chr2L_12420001 RAL-395 413 chr2L 12424346 12424351 chr2L 12424448 12424452 4 102 3.0 1.5 2.2 1.2 106 chr2L 12424346 intergenic not near genes chr2L 12424399 intergenic not near genes chr2L 12424452 intergenic CG6405 + chr2L_4_12420001 chr2L_12420001 RAL-395 414 chr2L 12444762 12444818 chr2L 12444870 12444925 19 107 5.5 5.0 5.2 3.1 163 chr2L 12444762 intron Oatp33Ea - chr2L 12444844 intron Oatp33Ea - chr2L 12444925 intron Oatp33Ea - chr2L_19_12440001 chr2L_12440001 RAL-395 415 chr2L 12487864 12487918 chr2L 12487971 12488025 20 107 8.0 9.5 8.8 2.0 161 chr2L 12487864 intron bun - chr2L 12487944 intron bun - chr2L 12488025 intron bun - chr2L_20_12485001 chr2L_12485001 RAL-395 416 chr2L 12529219 12529431 chr2L 12529378 12529526 27 137 0.0 0.0 0.0 27.0 307 chr2L 12529219 intron bun - chr2L 12529372 intron bun - chr2L 12529526 intron bun - chr2L_27_12525001 chr2L_12525001 RAL-395 417 chr2L 12535533 12535541 chr2L 12535652 12535661 4 120 0.5 8.0 4.2 0.8 128 chr2L 12535533 intron bun - chr2L 12535597 intron bun - chr2L 12535661 intron bun - chr2L_4_12535001 chr2L_12535001 RAL-395 418 chr2L 12535542 12535550 chr2L 12535651 12535661 6 117 0.5 7.5 4.0 1.2 119 chr2L 12535542 intron bun - chr2L 12535602 intron bun - chr2L 12535661 intron bun - chr2L_6_12535001 chr2L_12535001 RAL-395 419 chr2L 12558295 12558353 chr2L 12565450 12565508 HMS-Beagle 38 7155 7.0 8.5 7.8 4.3 7213 chr2L 12558295 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565508 intergenic not near genes chr2L_38_12560001 chr2L_12560001 RAL-395 420 chr2L 12619885 12619906 chr2L 12619978 12620005 14 101 13.5 5.5 9.5 1.3 120 chr2L 12619885 intron,intron nub +,Ref2 - chr2L 12619945 intron,intron nub +,Ref2 - chr2L 12620005 intron,intron nub +,Ref2 - chr2L_14_12615001 chr2L_12615001 RAL-395 421 chr2L 12653760 12653809 chr2L 12653903 12653952 25 143 3.5 6.5 5.0 4.2 192 chr2L 12653760 intergenic not near genes chr2L 12653856 intergenic not near genes chr2L 12653952 intergenic not near genes chr2L_25_12650001 chr2L_12650001 RAL-395 422 chr2L 12731034 12731087 chr2L 12735826 12735880 F-element 25 4793 10.5 10.5 10.5 2.2 4846 chr2L 12731034 intron MRP + chr2L 12733457 intron MRP + chr2L 12735880 intron MRP + chr2L_25_12730001 chr2L_12730001 RAL-395 423 chr2L 12739150 12739195 chr2L 12743957 12744001 Doc 26 4807 10.5 12.0 11.2 2.1 4851 chr2L 12739150 exon MRP + chr2L 12741576 intron MRP + chr2L 12744001 exon MRP + chr2L_26_12740001 chr2L_12740001 RAL-395 424 chr2L 12751282 12751340 chr2L 12751391 12751449 25 108 5.0 5.5 5.2 4.0 167 chr2L 12751282 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751449 intergenic not near genes chr2L_25_12750001 chr2L_12750001 RAL-395 425 chr2L 12760221 12760257 chr2L 12760343 12760379 15 122 4.0 7.5 5.8 2.2 158 chr2L 12760221 intergenic CG15483 - chr2L 12760300 intergenic CG15483 - chr2L 12760379 3` UTR CG15483 - chr2L_15_12760001 chr2L_12760001 RAL-395 426 chr2L 12763800 12763870 chr2L 12764038 12764095 BS 11 233 0.0 0.0 0.0 11.0 295 chr2L 12763800 intergenic not near genes chr2L 12763948 intergenic not near genes chr2L 12764095 intergenic not near genes chr2L_11_12760001 chr2L_12760001 RAL-395 427 chr2L 12791577 12791630 chr2L 12795278 12795331 F-element 30 3698 10.0 7.5 8.8 3.1 3754 chr2L 12791577 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795331 intergenic not near genes chr2L_30_12790001 chr2L_12790001 RAL-395 428 chr2L 12807412 12807466 chr2L 12807519 12807573 15 106 5.0 3.0 4.0 3.0 161 chr2L 12807412 intergenic CR43818 - chr2L 12807492 intergenic CR43818 - chr2L 12807573 intergenic CR43818 - chr2L_15_12805001 chr2L_12805001 RAL-395 429 chr2L 12815970 12816025 chr2L 12816078 12816133 28 106 8.0 5.0 6.5 3.7 163 chr2L 12815970 intergenic not near genes chr2L 12816052 intergenic not near genes chr2L 12816133 intergenic not near genes chr2L_28_12815001 chr2L_12815001 RAL-395 430 chr2L 12835532 12835568 chr2L 12835667 12835701 15 135 5.0 0.0 2.5 4.3 169 chr2L 12835532 intergenic not near genes chr2L 12835616 intergenic not near genes chr2L 12835701 intergenic not near genes chr2L_15_12835001 chr2L_12835001 RAL-395 431 chr2L 12848400 12848466 chr2L 12848518 12848580 31 116 3.5 12.5 8.0 3.4 180 chr2L 12848400 intergenic not near genes chr2L 12848490 intergenic not near genes chr2L 12848580 intergenic not near genes chr2L_31_12845001 chr2L_12845001 RAL-395 432 chr2L 12861671 12861727 chr2L 12863164 12863220 hobo 32 1491 10.5 9.5 10.0 2.9 1549 chr2L 12861671 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863220 intergenic not near genes chr2L_32_12860001 chr2L_12860001 RAL-395 433 chr2L 12894005 12894049 chr2L 12895498 12895541 hobo 28 1492 10.0 17.5 13.8 1.9 1536 chr2L 12894005 intergenic not near genes chr2L 12894773 intergenic not near genes chr2L 12895541 intergenic not near genes chr2L_28_12890001 chr2L_12890001 RAL-395 434 chr2L 12905450 12905497 chr2L 12905560 12905606 12 108 6.0 3.5 4.8 2.1 156 chr2L 12905450 intergenic not near genes chr2L 12905528 intergenic not near genes chr2L 12905606 intergenic not near genes chr2L_12_12905001 chr2L_12905001 RAL-395 435 chr2L 12933835 12933846 chr2L 12941328 12941334 blood 6 7492 19.0 13.5 16.2 0.3 7499 chr2L 12933835 intergenic not near genes chr2L 12937584 intergenic not near genes chr2L 12941334 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-395 436 chr2L 12933848 12933882 chr2L 12941324 12941375 blood 20 7490 5.0 11.5 8.2 2.2 7527 chr2L 12933848 intergenic not near genes chr2L 12937612 intergenic not near genes chr2L 12941375 intergenic not near genes chr2L_20_12935001 chr2L_12935001 RAL-395 437 chr2L 12945950 12946008 chr2L 12946056 12946112 29 105 8.0 8.5 8.2 3.2 162 chr2L 12945950 intergenic not near genes chr2L 12946031 intergenic not near genes chr2L 12946112 intergenic not near genes chr2L_29_12945001 chr2L_12945001 RAL-395 438 chr2L 13125728 13125782 chr2L 13125831 13125885 28 102 11.0 4.5 7.8 3.2 157 chr2L 13125728 intergenic not near genes chr2L 13125806 intergenic not near genes chr2L 13125885 intergenic not near genes chr2L_28_13125001 chr2L_13125001 RAL-395 439 chr2L 13185294 13185350 chr2L 13185399 13185455 32 104 11.0 11.5 11.2 2.6 161 chr2L 13185294 3` UTR CG16974 - chr2L 13185374 3` UTR CG16974 - chr2L 13185455 exon CG16974 - chr2L_32_13185001 chr2L_13185001 RAL-395 440 chr2L 13204293 13204308 chr2L 13204418 13204433 13 124 17.0 13.0 15.0 0.8 140 chr2L 13204293 intron Pect + chr2L 13204363 intron Pect + chr2L 13204433 intron Pect + chr2L_13_13200001 chr2L_13200001 RAL-395 441 chr2L 13328520 13328577 chr2L 13328911 13328968 37 390 6.0 11.0 8.5 3.9 448 chr2L 13328520 intron CG43778 - chr2L 13328744 intron CG43778 - chr2L 13328968 intron CG43778 - chr2L_37_13325001 chr2L_13325001 RAL-395 442 chr2L 13358232 13358264 chr2L 13358336 13358368 17 103 14.5 18.5 16.5 1.0 136 chr2L 13358232 intergenic not near genes chr2L 13358300 intergenic not near genes chr2L 13358368 intergenic not near genes chr2L_17_13355001 chr2L_13355001 RAL-395 443 chr2L 13398695 13398751 chr2L 13398801 13398857 18 106 5.5 1.5 3.5 4.0 162 chr2L 13398695 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398776 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398857 3` UTR CR44600 - chr2L_18_13395001 chr2L_13395001 RAL-395 444 chr2L 13405623 13405672 chr2L 13410446 13410495 Doc 31 4823 15.0 11.0 13.0 2.2 4872 chr2L 13405623 exon CG7110 + chr2L 13408059 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_31_13405001 chr2L_13405001 RAL-395 445 chr2L 13449446 13449492 chr2L 13456908 13456954 Quasimodo 7 7462 5.0 5.5 5.2 1.1 7508 chr2L 13449446 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453200 intron CG42784 + chr2L 13456954 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-395 446 chr2L 13481431 13481466 chr2L 13482064 13482099 jockey 16 633 10.0 15.5 12.8 1.2 668 chr2L 13481431 intron CG42784 + chr2L 13481765 intron CG42784 + chr2L 13482099 intron CG42784 + chr2L_16_13480001 chr2L_13480001 RAL-395 447 chr2L 13522109 13522162 chr2L 13527653 13527704 Transpac 26 5543 1.0 9.5 5.2 4.2 5595 chr2L 13522109 intron B4 - chr2L 13524906 intron B4 - chr2L 13527704 intron B4 - chr2L_26_13520001 chr2L_13520001 RAL-395 448 chr2L 13606105 13606155 chr2L 13606221 13606271 26 116 8.5 3.5 6.0 3.7 166 chr2L 13606105 intron kuz + chr2L 13606188 intron kuz + chr2L 13606271 intron kuz + chr2L_26_13605001 chr2L_13605001 RAL-395 449 chr2L 13622110 13622148 chr2L 13622235 13622273 18 124 14.0 4.0 9.0 1.8 163 chr2L 13622110 intron kuz + chr2L 13622192 intron kuz + chr2L 13622273 intron kuz + chr2L_18_13620001 chr2L_13620001 RAL-395 450 chr2L 13733746 13733776 chr2L 13733891 13733921 23 144 9.5 6.0 7.8 2.6 175 chr2L 13733746 intergenic not near genes chr2L 13733834 intergenic not near genes chr2L 13733921 intergenic not near genes chr2L_23_13730001 chr2L_13730001 RAL-395 451 chr2L 13749197 13749209 chr2L 13749305 13749318 8 109 0.5 0.5 0.5 5.3 121 chr2L 13749197 intron,intron CR44846 +,TM9SF4 + chr2L 13749258 intron,intron CR44846 +,TM9SF4 + chr2L 13749318 intron,intron CR44846 +,TM9SF4 + chr2L_8_13745001 chr2L_13745001 RAL-395 452 chr2L 13761778 13761828 chr2L 13762915 13762965 Doc 23 1136 4.5 10.0 7.2 2.8 1187 chr2L 13761778 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762965 intron TM9SF4 + chr2L_23_13760001 chr2L_13760001 RAL-395 453 chr2L 13800154 13800205 chr2L 13800284 13800334 12 130 3.0 5.0 4.0 2.4 180 chr2L 13800154 intergenic Sec71 + chr2L 13800244 intergenic not near genes chr2L 13800334 intergenic not near genes chr2L_12_13800001 chr2L_13800001 RAL-395 454 chr2L 13853064 13853112 chr2L 13862240 13862288 roo 31 9176 9.5 0.0 4.8 5.3 9224 chr2L 13853064 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862288 intron CenG1A + chr2L_31_13855001 chr2L_13855001 RAL-395 455 chr2L 13882558 13882615 chr2L 13882677 13882734 26 118 5.5 9.0 7.2 3.2 176 chr2L 13882558 intron CenG1A + chr2L 13882646 intron CenG1A + chr2L 13882734 intron CenG1A + chr2L_26_13880001 chr2L_13880001 RAL-395 456 chr2L 13918792 13918798 chr2L 13918905 13918911 4 113 14.5 8.5 11.5 0.3 119 chr2L 13918792 intron Ance-3 + chr2L 13918852 intron Ance-3 + chr2L 13918911 intron Ance-3 + chr2L_4_13915001 chr2L_13915001 RAL-395 457 chr2L 13918801 13918840 chr2L 13918903 13918953 16 111 2.5 8.0 5.2 2.6 152 chr2L 13918801 intron Ance-3 + chr2L 13918877 intron Ance-3 + chr2L 13918953 intron Ance-3 + chr2L_16_13915001 chr2L_13915001 RAL-395 458 chr2L 13944411 13944432 chr2L 13944557 13944578 4 146 4.0 6.0 5.0 0.7 167 chr2L 13944411 intron Ance-3 + chr2L 13944494 intron Ance-3 + chr2L 13944578 intron Ance-3 + chr2L_4_13940001 chr2L_13940001 RAL-395 459 chr2L 13953959 13954008 chr2L 13954092 13954160 7 149 7.0 0.0 3.5 1.6 201 chr2L 13953959 intron Ance-3 + chr2L 13954060 intron Ance-3 + chr2L 13954160 intron Ance-3 + chr2L_7_13950001 chr2L_13950001 RAL-395 460 chr2L 14029204 14029254 chr2L 14029311 14029361 24 106 5.0 6.5 5.8 3.5 157 chr2L 14029204 exon CG4500 + chr2L 14029282 3` UTR,3` UTR CG4500 +,CG18095 - chr2L 14029361 3` UTR,3` UTR CG4500 +,CG18095 - chr2L_24_14025001 chr2L_14025001 RAL-395 461 chr2L 14102839 14102851 chr2L 14102946 14102958 7 107 0.5 0.0 0.2 5.8 119 chr2L 14102839 intergenic not near genes chr2L 14102898 intergenic not near genes chr2L 14102958 intergenic not near genes chr2L_7_14100001 chr2L_14100001 RAL-395 462 chr2L 14142182 14142196 chr2L 14142285 14142299 7 102 18.5 10.0 14.2 0.5 117 chr2L 14142182 intron CG17341 + chr2L 14142240 intron CG17341 + chr2L 14142299 intron CG17341 + chr2L_7_14140001 chr2L_14140001 RAL-395 463 chr2L 14162127 14162137 chr2L 14162256 14162270 10 129 37.0 134.5 85.8 0.1 143 chr2L 14162127 exon CG43332 - chr2L 14162198 exon CG43332 - chr2L 14162270 exon CG43332 - chr2L_10_14160001 chr2L_14160001 RAL-395 464 chr2L 14298902 14298956 chr2L 14299016 14299070 29 112 8.5 5.5 7.0 3.6 168 chr2L 14298902 intron wb + chr2L 14298986 intron wb + chr2L 14299070 intron wb + chr2L_29_14295001 chr2L_14295001 RAL-395 465 chr2L 14333902 14333916 chr2L 14334028 14334042 9 126 8.5 12.0 10.2 0.8 140 chr2L 14333902 intergenic ms(2)34Fe +,CG33090 + chr2L 14333972 intergenic ms(2)34Fe +,CG33090 + chr2L 14334042 intergenic CG33090 +,ms(2)34Fe + chr2L_9_14330001 chr2L_14330001 RAL-395 466 chr2L 14396178 14396233 chr2L 14398960 14399015 23 2782 38.5 32.0 35.2 0.6 2837 chr2L 14396178 intron elB - chr2L 14397596 intron elB - chr2L 14399015 intron elB - chr2L_23_14395001 chr2L_14395001 RAL-395 467 chr2L 14396029 14396088 chr2L 14399112 14399171 30 3084 70.0 65.5 67.8 0.4 3142 chr2L 14396029 intron elB - chr2L 14397600 intron elB - chr2L 14399171 intron elB - chr2L_30_14395001 chr2L_14395001 RAL-395 468 chr2L 14462702 14462823 chr2L 14462815 14462945 10 117 0.0 0.0 0.0 10.0 243 chr2L 14462702 intergenic not near genes chr2L 14462824 intergenic not near genes chr2L 14462945 intergenic not near genes chr2L_10_14460001 chr2L_14460001 RAL-395 469 chr2L 14503414 14503431 chr2L 14503519 14503536 7 103 11.0 6.0 8.5 0.7 122 chr2L 14503414 intergenic not near genes chr2L 14503475 intergenic not near genes chr2L 14503536 intergenic not near genes chr2L_7_14500001 chr2L_14500001 RAL-395 470 chr2L 14547098 14547148 chr2L 14547201 14547257 29 106 9.5 13.5 11.5 2.3 159 chr2L 14547098 intergenic CG4218 - chr2L 14547178 intergenic CG4218 - chr2L 14547257 intergenic CG4218 - chr2L_29_14545001 chr2L_14545001 RAL-395 471 chr2L 14588361 14588419 chr2L 14588541 14588599 32 179 8.5 13.0 10.8 2.7 238 chr2L 14588361 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588599 intergenic CG42680 - chr2L_32_14585001 chr2L_14585001 RAL-395 472 chr2L 14601950 14602003 chr2L 14602060 14602113 27 110 9.5 7.5 8.5 2.8 163 chr2L 14601950 exon osp - chr2L 14602032 intron osp - chr2L 14602113 exon osp - chr2L_27_14600001 chr2L_14600001 RAL-395 473 chr2L 14605624 14605644 chr2L 14605728 14605751 13 106 19.5 17.5 18.5 0.7 127 chr2L 14605624 intron osp - chr2L 14605688 intron osp - chr2L 14605751 intron osp - chr2L_13_14605001 chr2L_14605001 RAL-395 474 chr2L 14641377 14641438 chr2L 14641482 14641543 31 105 11.5 6.0 8.8 3.2 166 chr2L 14641377 intron osp - chr2L 14641460 intron osp - chr2L 14641543 intron osp - chr2L_31_14640001 chr2L_14640001 RAL-395 475 chr2L 14641801 14641854 chr2L 14641917 14641971 7 116 7.0 0.5 3.8 1.5 170 chr2L 14641801 intron osp - chr2L 14641886 intron osp - chr2L 14641971 intron osp - chr2L_7_14640001 chr2L_14640001 RAL-395 476 chr2L 14642542 14642604 chr2L 14651731 14651793 roo 12 9188 7.0 4.5 5.8 1.8 9251 chr2L 14642542 intron osp - chr2L 14647168 intron osp - chr2L 14651793 intron osp - chr2L_12_14645001 chr2L_14645001 RAL-395 477 chr2L 14707187 14707238 chr2L 14707332 14707383 21 145 7.5 0.0 3.8 4.4 196 chr2L 14707187 intergenic not near genes chr2L 14707285 intergenic not near genes chr2L 14707383 intergenic not near genes chr2L_21_14705001 chr2L_14705001 RAL-395 478 chr2L 14715511 14715563 chr2L 14715627 14715680 17 115 9.0 6.0 7.5 2.0 169 chr2L 14715511 intergenic not near genes chr2L 14715596 intergenic not near genes chr2L 14715680 intergenic not near genes chr2L_17_14715001 chr2L_14715001 RAL-395 479 chr2L 14757918 14757975 chr2L 14758033 14758090 29 114 5.0 5.0 5.0 4.8 172 chr2L 14757918 intergenic not near genes chr2L 14758004 intergenic not near genes chr2L 14758090 intergenic not near genes chr2L_29_14755001 chr2L_14755001 RAL-395 480 chr2L 14831599 14831644 chr2L 14831762 14831806 19 163 5.5 7.0 6.2 2.6 207 chr2L 14831599 intergenic not near genes chr2L 14831702 intergenic not near genes chr2L 14831806 intergenic not near genes chr2L_19_14830001 chr2L_14830001 RAL-395 481 chr2L 14833771 14833822 chr2L 14833901 14833943 15 129 4.5 2.5 3.5 3.3 172 chr2L 14833771 intergenic not near genes chr2L 14833857 intergenic not near genes chr2L 14833943 intergenic not near genes chr2L_15_14830001 chr2L_14830001 RAL-395 482 chr2L 14840958 14841003 chr2L 14841071 14841116 15 112 5.5 8.0 6.8 1.9 158 chr2L 14840958 3` UTR CR43805 - chr2L 14841037 3` UTR CR43805 - chr2L 14841116 3` UTR CR43805 - chr2L_15_14840001 chr2L_14840001 RAL-395 483 chr2L 14889928 14889982 chr2L 14890379 14890432 jockey 31 450 8.5 8.0 8.2 3.4 504 chr2L 14889928 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890432 intergenic not near genes chr2L_31_14890001 chr2L_14890001 RAL-395 484 chr2L 14920010 14920060 chr2L 14920114 14920165 28 104 13.5 10.0 11.8 2.2 155 chr2L 14920010 intron CG42313 - chr2L 14920088 intron CG42313 - chr2L 14920165 intron CG42313 - chr2L_28_14920001 chr2L_14920001 RAL-395 485 chr2L 14954821 14954867 chr2L 14967754 14967800 17 12934 49.5 39.5 44.5 0.4 12979 chr2L 14954821 intron CG42313 - chr2L 14961310 intron CG42313 - chr2L 14967800 intron CG42313 - chr2L_17_14960001 chr2L_14960001 RAL-395 486 chr2L 14982116 14982290 chr2L 14982246 14982401 26 120 0.0 0.0 0.0 26.0 285 chr2L 14982116 intron mol - chr2L 14982258 intron mol - chr2L 14982401 intron mol - chr2L_26_14980001 chr2L_14980001 RAL-395 487 chr2L 14984361 14984405 chr2L 14991988 14992033 opus 10 7623 8.0 8.5 8.2 1.1 7672 chr2L 14984361 intron mol - chr2L 14988197 intron mol - chr2L 14992033 intron mol - chr2L_10_14985001 chr2L_14985001 RAL-395 488 chr2L 15003518 15003572 chr2L 15003628 15003682 28 108 10.0 9.0 9.5 2.7 164 chr2L 15003518 intergenic not near genes chr2L 15003600 intergenic not near genes chr2L 15003682 intergenic not near genes chr2L_28_15000001 chr2L_15000001 RAL-395 489 chr2L 15013126 15013179 chr2L 15013256 15013313 12 131 3.5 4.5 4.0 2.4 187 chr2L 15013126 intergenic CR43856 - chr2L 15013220 intergenic not near genes chr2L 15013313 intergenic not near genes chr2L_12_15010001 chr2L_15010001 RAL-395 490 chr2L 15014595 15014652 chr2L 15014700 15014757 19 101 0.0 3.5 1.8 6.8 162 chr2L 15014595 intergenic not near genes chr2L 15014676 intergenic not near genes chr2L 15014757 intergenic not near genes chr2L_19_15010001 chr2L_15010001 RAL-395 491 chr2L 15018581 15018618 chr2L 15018849 15018887 14 268 9.0 5.5 7.2 1.7 306 chr2L 15018581 intron GABA-B-R1 + chr2L 15018734 intron GABA-B-R1 + chr2L 15018887 intron GABA-B-R1 + chr2L_14_15015001 chr2L_15015001 RAL-395 492 chr2L 15044681 15044725 chr2L 15044783 15044827 14 102 7.5 1.0 4.2 2.7 146 chr2L 15044681 intergenic ck - chr2L 15044754 intergenic ck - chr2L 15044827 intergenic ck - chr2L_14_15040001 chr2L_15040001 RAL-395 493 chr2L 15056686 15056736 chr2L 15056801 15056851 18 115 9.5 5.0 7.2 2.2 165 chr2L 15056686 intron ck - chr2L 15056768 intron ck - chr2L 15056851 intron ck - chr2L_18_15055001 chr2L_15055001 RAL-395 494 chr2L 15072314 15072320 chr2L 15072431 15072438 4 117 14.5 13.5 14.0 0.3 124 chr2L 15072314 intron vas + chr2L 15072376 exon vas + chr2L 15072438 exon vas + chr2L_4_15070001 chr2L_15070001 RAL-395 495 chr2L 15078043 15078100 chr2L 15078157 15078213 36 113 6.0 5.0 5.5 5.5 170 chr2L 15078043 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078213 intron CG15270 + chr2L_36_15075001 chr2L_15075001 RAL-395 496 chr2L 15098512 15098540 chr2L 15098618 15098646 19 106 14.0 5.0 9.5 1.8 134 chr2L 15098512 intergenic not near genes chr2L 15098579 intergenic not near genes chr2L 15098646 intergenic not near genes chr2L_19_15095001 chr2L_15095001 RAL-395 497 chr2L 15122748 15122808 chr2L 15122854 15122914 17 106 4.5 4.0 4.2 3.3 166 chr2L 15122748 intergenic not near genes chr2L 15122831 intergenic not near genes chr2L 15122914 intergenic not near genes chr2L_17_15120001 chr2L_15120001 RAL-395 498 chr2L 15227670 15227727 chr2L 15227787 15227820 31 113 10.5 5.5 8.0 3.4 150 chr2L 15227670 intergenic not near genes chr2L 15227745 intergenic not near genes chr2L 15227820 intergenic not near genes chr2L_31_15225001 chr2L_15225001 RAL-395 499 chr2L 15245408 15245465 chr2L 15245513 15245571 22 106 11.5 7.0 9.2 2.2 163 chr2L 15245408 intron ZnT35C - chr2L 15245490 intron ZnT35C - chr2L 15245571 intron ZnT35C - chr2L_22_15245001 chr2L_15245001 RAL-395 500 chr2L 15313719 15313775 chr2L 15313865 15313869 31 145 8.5 10.0 9.2 3.0 150 chr2L 15313719 intergenic not near genes chr2L 15313794 intergenic not near genes chr2L 15313869 intergenic not near genes chr2L_31_15310001 chr2L_15310001 RAL-395 501 chr2L 15375790 15375843 chr2L 15375928 15375981 12 138 1.5 2.5 2.0 4.0 191 chr2L 15375790 intergenic not near genes chr2L 15375886 intergenic not near genes chr2L 15375981 intergenic not near genes chr2L_12_15375001 chr2L_15375001 RAL-395 502 chr2L 15443300 15443356 chr2L 15443410 15443466 23 109 2.5 8.5 5.5 3.5 166 chr2L 15443300 intergenic not near genes chr2L 15443383 intergenic not near genes chr2L 15443466 intergenic not near genes chr2L_23_15440001 chr2L_15440001 RAL-395 503 chr2L 15446023 15446076 chr2L 15453518 15453571 blood 31 7495 8.0 3.0 5.5 4.8 7548 chr2L 15446023 intergenic not near genes chr2L 15449797 intergenic not near genes chr2L 15453571 intergenic not near genes chr2L_31_15445001 chr2L_15445001 RAL-395 504 chr2L 15490026 15490045 chr2L 15490168 15490187 15 142 0.0 12.0 6.0 2.1 161 chr2L 15490026 intergenic not near genes chr2L 15490106 intergenic not near genes chr2L 15490187 intergenic not near genes chr2L_15_15490001 chr2L_15490001 RAL-395 505 chr2L 15499885 15499940 chr2L 15499999 15500053 21 113 4.5 6.5 5.5 3.2 168 chr2L 15499885 intron lace + chr2L 15499969 intron lace + chr2L 15500053 intron lace + chr2L_21_15495001 chr2L_15495001 RAL-395 506 chr2L 15521611 15521652 chr2L 15521720 15521761 21 108 6.5 9.5 8.0 2.3 150 chr2L 15521611 intergenic CR43761 + chr2L 15521686 intergenic CR43761 + chr2L 15521761 intergenic CR43761 + chr2L_21_15520001 chr2L_15520001 RAL-395 507 chr2L 15527408 15527456 chr2L 15527511 15527561 19 103 2.5 11.5 7.0 2.4 153 chr2L 15527408 intergenic not near genes chr2L 15527484 intergenic not near genes chr2L 15527561 intergenic not near genes chr2L_19_15525001 chr2L_15525001 RAL-395 508 chr2L 15533239 15533256 chr2L 15533341 15533358 13 101 21.0 10.0 15.5 0.8 119 chr2L 15533239 intergenic not near genes chr2L 15533298 intergenic not near genes chr2L 15533358 intergenic not near genes chr2L_13_15530001 chr2L_15530001 RAL-395 509 chr2L 15533257 15533298 chr2L 15533340 15533400 14 101 6.5 9.0 7.8 1.6 143 chr2L 15533257 intergenic not near genes chr2L 15533328 intergenic not near genes chr2L 15533400 intergenic not near genes chr2L_14_15530001 chr2L_15530001 RAL-395 510 chr2L 15541328 15541377 chr2L 15541434 15541484 31 107 5.0 7.0 6.0 4.4 156 chr2L 15541328 intergenic not near genes chr2L 15541406 intergenic not near genes chr2L 15541484 intergenic not near genes chr2L_31_15540001 chr2L_15540001 RAL-395 511 chr2L 15555178 15555203 chr2L 15555330 15555356 9 153 9.0 9.5 9.2 0.9 178 chr2L 15555178 intron kek3 + chr2L 15555267 intron kek3 + chr2L 15555356 intron kek3 + chr2L_9_15555001 chr2L_15555001 RAL-395 512 chr2L 15586386 15586441 chr2L 15593464 15593518 297 21 7077 4.0 6.5 5.2 3.4 7132 chr2L 15586386 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593518 intergenic not near genes chr2L_21_15585001 chr2L_15585001 RAL-395 513 chr2L 15598735 15598788 chr2L 15598847 15598900 20 112 6.5 5.5 6.0 2.9 165 chr2L 15598735 intergenic not near genes chr2L 15598818 intergenic not near genes chr2L 15598900 intergenic not near genes chr2L_20_15595001 chr2L_15595001 RAL-395 514 chr2L 15624908 15624966 chr2L 15625029 15625088 21 121 6.5 3.5 5.0 3.5 180 chr2L 15624908 intergenic not near genes chr2L 15624998 intergenic not near genes chr2L 15625088 intergenic not near genes chr2L_21_15620001 chr2L_15620001 RAL-395 515 chr2L 15636649 15636673 chr2L 15636751 15636775 6 102 8.5 0.0 4.2 1.2 126 chr2L 15636649 intergenic not near genes chr2L 15636712 intergenic not near genes chr2L 15636775 intergenic not near genes chr2L_6_15635001 chr2L_15635001 RAL-395 516 chr2L 15642929 15642986 chr2L 15643040 15643098 16 109 5.0 4.5 4.8 2.8 169 chr2L 15642929 intergenic not near genes chr2L 15643014 intergenic not near genes chr2L 15643098 intergenic not near genes chr2L_16_15640001 chr2L_15640001 RAL-395 517 chr2L 15751417 15751463 chr2L 15751520 15751565 16 103 5.0 3.0 4.0 3.2 148 chr2L 15751417 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751491 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751565 3` UTR snRNA:U5:35D - chr2L_16_15750001 chr2L_15750001 RAL-395 518 chr2L 15813993 15814041 chr2L 15814106 15814154 7 113 0.0 1.0 0.5 4.7 161 chr2L 15813993 intergenic not near genes chr2L 15814074 intergenic not near genes chr2L 15814154 intergenic not near genes chr2L_7_15810001 chr2L_15810001 RAL-395 519 chr2L 15819290 15819333 chr2L 15819392 15819435 16 102 7.5 5.5 6.5 2.1 145 chr2L 15819290 intergenic not near genes chr2L 15819362 intergenic not near genes chr2L 15819435 intergenic not near genes chr2L_16_15815001 chr2L_15815001 RAL-395 520 chr2L 15821063 15821080 chr2L 15821177 15821206 8 123 0.0 1.0 0.5 5.3 143 chr2L 15821063 intergenic not near genes chr2L 15821134 intergenic not near genes chr2L 15821206 intergenic not near genes chr2L_8_15820001 chr2L_15820001 RAL-395 521 chr2L 15826869 15826882 chr2L 15829289 15829302 Tabor 7 2420 7.5 11.0 9.2 0.7 2433 chr2L 15826869 intergenic not near genes chr2L 15828086 intergenic not near genes chr2L 15829302 intergenic not near genes chr2L_7_15825001 chr2L_15825001 RAL-395 522 chr2L 15887692 15887745 chr2L 15887851 15887904 39 158 11.5 9.0 10.2 3.5 212 chr2L 15887692 intergenic not near genes chr2L 15887798 intergenic not near genes chr2L 15887904 intergenic not near genes chr2L_39_15885001 chr2L_15885001 RAL-395 523 chr2L 15915629 15915685 chr2L 15915733 15915789 31 104 6.5 6.0 6.2 4.3 160 chr2L 15915629 intron beat-Ib - chr2L 15915709 intron beat-Ib - chr2L 15915789 intron beat-Ib - chr2L_31_15915001 chr2L_15915001 RAL-395 524 chr2L 15956000 15956024 chr2L 15957492 15957497 hobo 9 1491 22.0 9.5 15.8 0.5 1497 chr2L 15956000 intron beat-Ib - chr2L 15956748 intron beat-Ib - chr2L 15957497 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-395 525 chr2L 15956025 15956050 chr2L 15957488 15957543 hobo 15 1489 12.0 8.5 10.2 1.3 1518 chr2L 15956025 intron beat-Ib - chr2L 15956784 intron beat-Ib - chr2L 15957543 intron beat-Ib - chr2L_15_15955001 chr2L_15955001 RAL-395 526 chr2L 16001451 16001491 chr2L 16001565 16001605 11 112 0.0 9.5 4.8 1.9 154 chr2L 16001451 intron beat-Ic + chr2L 16001528 intron beat-Ic + chr2L 16001605 intron beat-Ic + chr2L_11_16000001 chr2L_16000001 RAL-395 527 chr2L 16058099 16058148 chr2L 16058266 16058315 12 167 9.5 6.5 8.0 1.3 216 chr2L 16058099 intron beat-Ia + chr2L 16058207 intron beat-Ia + chr2L 16058315 intron beat-Ia + chr2L_12_16055001 chr2L_16055001 RAL-395 528 chr2L 16068552 16068604 chr2L 16068662 16068713 15 107 4.5 3.0 3.8 3.1 161 chr2L 16068552 intron beat-Ia + chr2L 16068632 intron beat-Ia + chr2L 16068713 intron beat-Ia + chr2L_15_16065001 chr2L_16065001 RAL-395 529 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 44 145889 30.5 33.5 32.0 1.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_44_16140001 chr2L_16140001 RAL-395 530 chr2L 16141144 16141150 chr2L 16146377 16146383 copia 4 5233 17.0 5.5 11.2 0.3 5239 chr2L 16141144 intergenic not near genes chr2L 16143764 intergenic not near genes chr2L 16146383 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-395 531 chr2L 16141152 16141192 chr2L 16146374 16146425 copia 13 5231 8.0 5.0 6.5 1.7 5273 chr2L 16141152 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146425 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-395 532 chr2L 16153710 16153767 chr2L 16160790 16160847 297 38 7080 8.0 8.5 8.2 4.1 7137 chr2L 16153710 intergenic not near genes chr2L 16157278 intergenic not near genes chr2L 16160847 intergenic not near genes chr2L_38_16155001 chr2L_16155001 RAL-395 533 chr2L 16163546 16163562 chr2L 16163651 16163667 10 105 4.0 12.5 8.2 1.1 121 chr2L 16163546 intergenic not near genes chr2L 16163606 intergenic not near genes chr2L 16163667 intergenic not near genes chr2L_10_16160001 chr2L_16160001 RAL-395 534 chr2L 9084336 9084340 chr2L 16217660 16217660 13 7133322 35.0 33.5 34.2 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-395 535 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 23 145889 30.5 33.5 32.0 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_23_16140001 chr2L_16140001 RAL-395 536 chr2L 16224926 16224943 chr2L 16225076 16225097 5 153 22.0 13.5 17.8 0.3 171 chr2L 16224926 intergenic not near genes chr2L 16225012 intergenic not near genes chr2L 16225097 intergenic not near genes chr2L_5_16225001 chr2L_16225001 RAL-395 537 chr2L 16280235 16280280 chr2L 16281431 16281477 1360 17 1197 3.5 9.0 6.2 2.4 1242 chr2L 16280235 intron crp - chr2L 16280856 intron crp - chr2L 16281477 intron crp - chr2L_17_16280001 chr2L_16280001 RAL-395 538 chr2L 16354766 16354786 chr2L 16354884 16354904 8 116 4.0 14.5 9.2 0.8 138 chr2L 16354766 intergenic CaBP1 -,CG4455 + chr2L 16354835 intergenic CaBP1 -,CG4455 + chr2L 16354904 3` UTR CaBP1 - chr2L_8_16350001 chr2L_16350001 RAL-395 539 chr2L 16363915 16363960 chr2L 16364187 16364232 18 272 3.0 6.5 4.8 3.1 317 chr2L 16363915 intergenic not near genes chr2L 16364074 intergenic not near genes chr2L 16364232 intergenic not near genes chr2L_18_16360001 chr2L_16360001 RAL-395 540 chr2L 16367077 16367130 chr2L 16367180 16367233 19 103 2.0 7.5 4.8 3.3 156 chr2L 16367077 intergenic jhamt + chr2L 16367155 intergenic jhamt + chr2L 16367233 intergenic jhamt + chr2L_19_16365001 chr2L_16365001 RAL-395 541 chr2L 16384470 16384521 chr2L 16384585 16384635 23 114 9.5 9.5 9.5 2.2 165 chr2L 16384470 intergenic not near genes chr2L 16384552 intergenic not near genes chr2L 16384635 intergenic not near genes chr2L_23_16380001 chr2L_16380001 RAL-395 542 chr2L 16386430 16386450 chr2L 16386534 16386554 4 104 0.0 4.5 2.2 1.2 124 chr2L 16386430 intergenic not near genes chr2L 16386492 intergenic not near genes chr2L 16386554 intergenic not near genes chr2L_4_16385001 chr2L_16385001 RAL-395 543 chr2L 16391780 16391832 chr2L 16391881 16391934 14 102 1.0 1.0 1.0 7.0 154 chr2L 16391780 intergenic not near genes chr2L 16391857 intergenic not near genes chr2L 16391934 intergenic not near genes chr2L_14_16390001 chr2L_16390001 RAL-395 544 chr2L 16395301 16395360 chr2L 16395482 16395541 24 179 5.5 6.0 5.8 3.5 240 chr2L 16395301 intergenic not near genes chr2L 16395421 intergenic not near genes chr2L 16395541 intergenic not near genes chr2L_24_16395001 chr2L_16395001 RAL-395 545 chr2L 16468322 16468332 chr2L 16468439 16468449 13 116 0.0 8.0 4.0 2.6 127 chr2L 16468322 intron dac - chr2L 16468386 intron dac - chr2L 16468449 intron dac - chr2L_13_16465001 chr2L_16465001 RAL-395 546 chr2L 16504978 16505017 chr2L 16505114 16505153 17 134 0.0 11.5 5.8 2.5 175 chr2L 16504978 intron Tpr2 + chr2L 16505066 intron Tpr2 + chr2L 16505153 intron Tpr2 + chr2L_17_16505001 chr2L_16505001 RAL-395 547 chr2L 16507944 16507967 chr2L 16508056 16508081 8 114 0.0 16.5 8.2 0.9 137 chr2L 16507944 intergenic CG5953 -,Tpr2 + chr2L 16508012 intergenic CG5953 -,Tpr2 + chr2L 16508081 3` UTR CG5953 - chr2L_8_16505001 chr2L_16505001 RAL-395 548 chr2L 16511963 16511992 chr2L 16519116 16519145 HMS-Beagle 11 7153 5.5 8.5 7.0 1.4 7182 chr2L 16511963 intron CG5953 - chr2L 16515554 intron CG5953 - chr2L 16519145 intron CG5953 - chr2L_11_16515001 chr2L_16515001 RAL-395 549 chr2L 16551850 16551906 chr2L 16551963 16552019 30 112 10.0 11.5 10.8 2.5 169 chr2L 16551850 intron CG42389 + chr2L 16551934 intron CG42389 + chr2L 16552019 intron CG42389 + chr2L_30_16550001 chr2L_16550001 RAL-395 550 chr2L 16572202 16572222 chr2L 16572321 16572334 8 118 4.0 10.0 7.0 1.0 132 chr2L 16572202 intron CG42389 + chr2L 16572268 intron CG42389 + chr2L 16572334 intron CG42389 + chr2L_8_16570001 chr2L_16570001 RAL-395 551 chr2L 16572230 16572240 chr2L 16572350 16572361 7 121 4.0 17.0 10.5 0.6 131 chr2L 16572230 intron CG42389 + chr2L 16572296 intron CG42389 + chr2L 16572361 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-395 552 chr2L 16693887 16693941 chr2L 16693994 16694039 25 105 7.0 12.5 9.8 2.3 152 chr2L 16693887 intron grp + chr2L 16693963 intron grp + chr2L 16694039 intron grp + chr2L_25_16690001 chr2L_16690001 RAL-395 553 chr2L 16697065 16697087 chr2L 16697241 16697263 4 176 6.0 0.0 3.0 1.0 198 chr2L 16697065 intron grp + chr2L 16697164 intron grp + chr2L 16697263 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-395 554 chr2L 16712999 16713047 chr2L 16713144 16713191 16 143 6.5 7.5 7.0 2.0 192 chr2L 16712999 intron CG31808 - chr2L 16713095 intron CG31808 - chr2L 16713191 intron CG31808 - chr2L_16_16710001 chr2L_16710001 RAL-395 555 chr2L 16840984 16841041 chr2L 16841087 16841144 26 103 3.5 8.0 5.8 3.8 160 chr2L 16840984 intron,intron SclA +,SclB + chr2L 16841064 intron,intron SclA +,SclB + chr2L 16841144 intron,intron SclA +,SclB + chr2L_26_16840001 chr2L_16840001 RAL-395 556 chr2L 16866999 16867029 chr2L 16867120 16867150 11 121 0.0 6.5 3.2 2.6 151 chr2L 16866999 intergenic not near genes chr2L 16867074 intergenic not near genes chr2L 16867150 intergenic not near genes chr2L_11_16865001 chr2L_16865001 RAL-395 557 chr2L 16873229 16873260 chr2L 16873339 16873369 18 109 12.5 0.5 6.5 2.4 140 chr2L 16873229 intron CR31781 + chr2L 16873299 intron CR31781 + chr2L 16873369 intron CR31781 + chr2L_18_16870001 chr2L_16870001 RAL-395 558 chr2L 16880838 16880840 chr2L 16880946 16880948 4 108 8.0 13.0 10.5 0.3 110 chr2L 16880838 intron,intron CG31743 +,CG34313 + chr2L 16880893 intron,intron CG31743 +,CG34313 + chr2L 16880948 intron,intron CG31743 +,CG34313 + chr2L_4_16880001 chr2L_16880001 RAL-395 559 chr2L 16939976 16940015 chr2L 16940080 16940119 24 103 7.0 13.0 10.0 2.2 143 chr2L 16939976 intergenic not near genes chr2L 16940048 intergenic not near genes chr2L 16940119 intergenic not near genes chr2L_24_16940001 chr2L_16940001 RAL-395 560 chr2L 16958088 16958134 chr2L 16962902 16962948 Doc 20 4814 6.5 9.5 8.0 2.2 4860 chr2L 16958088 intergenic not near genes chr2L 16960518 intergenic not near genes chr2L 16962948 intergenic not near genes chr2L_20_16960001 chr2L_16960001 RAL-395 561 chr2L 17000097 17000147 chr2L 17000245 17000294 19 148 8.5 9.0 8.8 1.9 197 chr2L 17000097 intergenic not near genes chr2L 17000196 intergenic not near genes chr2L 17000294 intergenic not near genes chr2L_19_17000001 chr2L_17000001 RAL-395 562 chr2L 17018685 17018725 chr2L 17018787 17018827 6 102 6.5 0.0 3.2 1.4 142 chr2L 17018685 intergenic not near genes chr2L 17018756 intergenic not near genes chr2L 17018827 intergenic not near genes chr2L_6_17015001 chr2L_17015001 RAL-395 563 chr2L 17050009 17050049 chr2L 17050122 17050162 12 112 3.5 12.0 7.8 1.4 153 chr2L 17050009 intergenic not near genes chr2L 17050086 intergenic not near genes chr2L 17050162 intergenic not near genes chr2L_12_17050001 chr2L_17050001 RAL-395 564 chr2L 17052383 17052444 chr2L 17052521 17052582 18 138 1.0 4.0 2.5 5.1 199 chr2L 17052383 intergenic not near genes chr2L 17052482 intergenic not near genes chr2L 17052582 intergenic not near genes chr2L_18_17050001 chr2L_17050001 RAL-395 565 chr2L 17053253 17053310 chr2L 17053689 17053746 27 435 5.5 5.0 5.2 4.4 493 chr2L 17053253 intergenic not near genes chr2L 17053500 intergenic not near genes chr2L 17053746 intergenic not near genes chr2L_27_17050001 chr2L_17050001 RAL-395 566 chr2L 17062735 17062787 chr2L 17062843 17062895 7 107 1.0 2.0 1.5 2.8 160 chr2L 17062735 intergenic not near genes chr2L 17062815 intergenic not near genes chr2L 17062895 intergenic not near genes chr2L_7_17060001 chr2L_17060001 RAL-395 567 chr2L 17089936 17089983 chr2L 17090051 17090099 21 116 1.0 13.0 7.0 2.6 163 chr2L 17089936 intergenic not near genes chr2L 17090018 intergenic not near genes chr2L 17090099 intergenic not near genes chr2L_21_17090001 chr2L_17090001 RAL-395 568 chr2L 17167543 17167577 chr2L 17167810 17167844 pogo 11 267 9.0 7.5 8.2 1.2 301 chr2L 17167543 intron,intron CG34106 +,beat-IIIa + chr2L 17167694 intron,intron CG34106 +,beat-IIIa + chr2L 17167844 intron,intron CG34106 +,beat-IIIa + chr2L_11_17165001 chr2L_17165001 RAL-395 569 chr2L 17168050 17168106 chr2L 17168659 17168715 32 609 52.0 34.5 43.2 0.7 665 chr2L 17168050 intron,intron CG34106 +,beat-IIIa + chr2L 17168382 intron,intron CG34106 +,beat-IIIa + chr2L 17168715 intron,intron CG34106 +,beat-IIIa + chr2L_32_17165001 chr2L_17165001 RAL-395 570 chr2L 17199144 17199183 chr2L 17200637 17200676 hobo 17 1492 9.5 5.5 7.5 2.0 1532 chr2L 17199144 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200676 intron beat-IIIc - chr2L_17_17195001 chr2L_17195001 RAL-395 571 chr2L 17208027 17208083 chr2L 17208149 17208196 17 121 9.5 3.0 6.2 2.4 169 chr2L 17208027 intron beat-IIIc - chr2L 17208112 intron beat-IIIc - chr2L 17208196 intron beat-IIIc - chr2L_17_17205001 chr2L_17205001 RAL-395 572 chr2L 17220789 17220847 chr2L 17220904 17220962 24 114 6.0 3.0 4.5 4.4 173 chr2L 17220789 intron beat-IIIc - chr2L 17220876 intron beat-IIIc - chr2L 17220962 intron beat-IIIc - chr2L_24_17220001 chr2L_17220001 RAL-395 573 chr2L 17264721 17264772 chr2L 17264826 17264877 24 106 9.0 5.5 7.2 2.9 156 chr2L 17264721 intergenic not near genes chr2L 17264799 intergenic not near genes chr2L 17264877 intergenic not near genes chr2L_24_17260001 chr2L_17260001 RAL-395 574 chr2L 17273173 17273220 chr2L 17277982 17278029 F-element 24 4809 6.0 8.0 7.0 3.0 4856 chr2L 17273173 intergenic not near genes chr2L 17275601 intergenic not near genes chr2L 17278029 intergenic not near genes chr2L_24_17275001 chr2L_17275001 RAL-395 575 chr2L 17289209 17289251 chr2L 17289313 17289356 7 105 4.0 0.0 2.0 2.3 147 chr2L 17289209 intergenic not near genes chr2L 17289282 intergenic not near genes chr2L 17289356 intergenic not near genes chr2L_7_17285001 chr2L_17285001 RAL-395 576 chr2L 17304961 17305011 chr2L 17305165 17305215 17 204 3.0 4.0 3.5 3.8 254 chr2L 17304961 intergenic not near genes chr2L 17305088 intergenic not near genes chr2L 17305215 intergenic not near genes chr2L_17_17305001 chr2L_17305001 RAL-395 577 chr2L 17310359 17310379 chr2L 17310479 17310499 7 120 0.0 6.0 3.0 1.8 140 chr2L 17310359 intergenic not near genes chr2L 17310429 intergenic not near genes chr2L 17310499 intergenic not near genes chr2L_7_17310001 chr2L_17310001 RAL-395 578 chr2L 17333560 17333609 chr2L 17333671 17333720 19 111 8.5 4.5 6.5 2.5 160 chr2L 17333560 intergenic not near genes chr2L 17333640 intergenic not near genes chr2L 17333720 intergenic not near genes chr2L_19_17330001 chr2L_17330001 RAL-395 579 chr2L 17335510 17335527 chr2L 17336710 17336726 1360 6 1200 3.5 0.5 2.0 2.0 1216 chr2L 17335510 intergenic not near genes chr2L 17336118 intergenic not near genes chr2L 17336726 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-395 580 chr2L 17359996 17360036 chr2L 17360200 17360240 14 204 10.0 1.5 5.8 2.1 244 chr2L 17359996 intergenic not near genes chr2L 17360118 intergenic not near genes chr2L 17360240 intergenic not near genes chr2L_14_17360001 chr2L_17360001 RAL-395 581 chr2L 17424681 17424738 chr2L 17424819 17424876 16 138 3.0 3.0 3.0 4.0 195 chr2L 17424681 intron Dif - chr2L 17424778 intron Dif - chr2L 17424876 intron Dif - chr2L_16_17420001 chr2L_17420001 RAL-395 582 chr2L 17432605 17432665 chr2L 17432708 17432768 31 102 6.0 5.0 5.5 4.8 163 chr2L 17432605 intron Dif - chr2L 17432686 intron Dif - chr2L 17432768 intron Dif - chr2L_31_17430001 chr2L_17430001 RAL-395 583 chr2L 17456770 17456825 chr2L 17456884 17456939 30 113 7.0 10.0 8.5 3.2 169 chr2L 17456770 intron,exon CG5050 +,CG18563 - chr2L 17456854 intron,exon CG5050 +,CG18563 - chr2L 17456939 intron,exon CG5050 +,CG18563 - chr2L_30_17455001 chr2L_17455001 RAL-395 584 chr2L 17466935 17466990 chr2L 17467382 17467436 27 444 11.0 10.5 10.8 2.3 501 chr2L 17466935 intron BicD - chr2L 17467186 intron BicD - chr2L 17467436 intron BicD - chr2L_27_17465001 chr2L_17465001 RAL-395 585 chr2L 17491081 17491088 chr2L 17491189 17491193 4 107 0.0 17.0 8.5 0.4 112 chr2L 17491081 intron qua - chr2L 17491137 intron qua - chr2L 17491193 intron qua - chr2L_4_17490001 chr2L_17490001 RAL-395 586 chr2L 17538295 17538342 chr2L 17538616 17538663 23 321 7.0 6.0 6.5 3.1 368 chr2L 17538295 intergenic not near genes chr2L 17538479 intergenic not near genes chr2L 17538663 intergenic not near genes chr2L_23_17535001 chr2L_17535001 RAL-395 587 chr2L 17543570 17543622 chr2L 17543689 17543741 28 119 7.0 9.0 8.0 3.1 171 chr2L 17543570 intergenic not near genes chr2L 17543656 intergenic not near genes chr2L 17543741 intergenic not near genes chr2L_28_17540001 chr2L_17540001 RAL-395 588 chr2L 17564136 17564179 chr2L 17564245 17564287 13 108 3.0 4.5 3.8 2.7 151 chr2L 17564136 intergenic not near genes chr2L 17564212 intergenic not near genes chr2L 17564287 intergenic not near genes chr2L_13_17560001 chr2L_17560001 RAL-395 589 chr2L 17571148 17571162 chr2L 17571257 17571271 7 109 0.0 16.0 8.0 0.8 123 chr2L 17571148 intergenic not near genes chr2L 17571210 intergenic not near genes chr2L 17571271 intergenic not near genes chr2L_7_17570001 chr2L_17570001 RAL-395 590 chr2L 17577707 17577735 chr2L 17577808 17577837 9 102 15.0 8.5 11.8 0.7 130 chr2L 17577707 intergenic not near genes chr2L 17577772 intergenic not near genes chr2L 17577837 intergenic not near genes chr2L_9_17575001 chr2L_17575001 RAL-395 591 chr2L 17607459 17607474 chr2L 17607582 17607598 10 124 11.0 1.0 6.0 1.4 139 chr2L 17607459 intergenic CR44412 - chr2L 17607528 intergenic CR44412 - chr2L 17607598 intergenic CR44412 - chr2L_10_17605001 chr2L_17605001 RAL-395 592 chr2L 17687491 17687517 chr2L 17692262 17692288 F-element 14 4770 8.0 7.0 7.5 1.6 4797 chr2L 17687491 intron CadN - chr2L 17689890 intron CadN - chr2L 17692288 intron CadN - chr2L_14_17685001 chr2L_17685001 RAL-395 593 chr2L 17723766 17723799 chr2L 17723885 17723918 14 119 6.5 4.5 5.5 2.2 152 chr2L 17723766 intron CadN - chr2L 17723842 intron CadN - chr2L 17723918 intron CadN - chr2L_14_17720001 chr2L_17720001 RAL-395 594 chr2L 17727848 17727875 chr2L 17729335 17729368 hobo 14 1492 9.0 18.5 13.8 0.9 1520 chr2L 17727848 intron CadN - chr2L 17728608 intron CadN - chr2L 17729368 intron CadN - chr2L_14_17725001 chr2L_17725001 RAL-395 595 chr2L 17741121 17741181 chr2L 17741231 17741290 30 109 5.0 8.5 6.8 3.8 169 chr2L 17741121 intron CadN - chr2L 17741206 intron CadN - chr2L 17741290 intron CadN - chr2L_30_17740001 chr2L_17740001 RAL-395 596 chr2L 17819893 17819923 chr2L 17825123 17825153 copia 13 5230 14.0 5.0 9.5 1.2 5260 chr2L 17819893 intron CadN2 - chr2L 17822523 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_13_17820001 chr2L_17820001 RAL-395 597 chr2L 17863589 17863645 chr2L 17863696 17863752 22 106 5.0 5.0 5.0 3.7 163 chr2L 17863589 intron CadN2 - chr2L 17863670 intron CadN2 - chr2L 17863752 intron CadN2 - chr2L_22_17860001 chr2L_17860001 RAL-395 598 chr2L 17879971 17880030 chr2L 17880084 17880143 24 112 3.0 2.0 2.5 6.9 172 chr2L 17879971 intergenic not near genes chr2L 17880057 intergenic not near genes chr2L 17880143 intergenic not near genes chr2L_24_17880001 chr2L_17880001 RAL-395 599 chr2L 17911938 17911988 chr2L 17914142 17914192 pogo 24 2203 5.5 6.5 6.0 3.4 2254 chr2L 17911938 intergenic not near genes chr2L 17913065 intergenic not near genes chr2L 17914192 intergenic CG43271 - chr2L_24_17910001 chr2L_17910001 RAL-395 600 chr2L 17944105 17944140 chr2L 17944209 17944233 20 103 12.5 11.5 12.0 1.5 128 chr2L 17944105 intergenic not near genes chr2L 17944169 intergenic not near genes chr2L 17944233 intergenic not near genes chr2L_20_17940001 chr2L_17940001 RAL-395 601 chr2L 17951921 17951978 chr2L 17953414 17953470 hobo 26 1490 5.5 10.5 8.0 2.9 1549 chr2L 17951921 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953470 intergenic not near genes chr2L_26_17950001 chr2L_17950001 RAL-395 602 chr2L 18002079 18002133 chr2L 18002268 18002322 33 188 8.0 4.5 6.2 4.6 243 chr2L 18002079 intergenic not near genes chr2L 18002200 intergenic not near genes chr2L 18002322 intergenic not near genes chr2L_33_18000001 chr2L_18000001 RAL-395 603 chr2L 18051861 18051903 chr2L 18061023 18061076 roo 18 9172 9.5 8.5 9.0 1.8 9215 chr2L 18051861 intron rdo + chr2L 18056468 intron rdo + chr2L 18061076 intron rdo + chr2L_18_18055001 chr2L_18055001 RAL-395 604 chr2L 18078254 18078309 chr2L 18078365 18078421 37 111 6.5 10.0 8.2 4.0 167 chr2L 18078254 intergenic Arr1 + chr2L 18078338 5` UTR Arr1 + chr2L 18078421 exon Arr1 + chr2L_37_18075001 chr2L_18075001 RAL-395 605 chr2L 18079791 18079848 chr2L 18079903 18079960 22 112 3.5 6.5 5.0 3.7 169 chr2L 18079791 intron Arr1 + chr2L 18079876 intron Arr1 + chr2L 18079960 exon Arr1 + chr2L_22_18075001 chr2L_18075001 RAL-395 606 chr2L 18107756 18107817 chr2L 18107866 18107922 27 108 8.0 4.5 6.2 3.8 166 chr2L 18107756 intergenic not near genes chr2L 18107839 intergenic not near genes chr2L 18107922 intergenic not near genes chr2L_27_18105001 chr2L_18105001 RAL-395 607 chr2L 18185009 18185025 chr2L 18185150 18185152 7 139 6.5 10.5 8.5 0.7 143 chr2L 18185009 intron CG42750 - chr2L 18185080 intron CG42750 - chr2L 18185152 intron CG42750 - chr2L_7_18185001 chr2L_18185001 RAL-395 608 chr2L 18254787 18254836 chr2L 18254913 18254962 16 125 4.5 5.5 5.0 2.7 175 chr2L 18254787 intron CG42750 - chr2L 18254874 intron CG42750 - chr2L 18254962 intron CG42750 - chr2L_16_18250001 chr2L_18250001 RAL-395 609 chr2L 18274014 18274069 chr2L 18274126 18274181 34 112 7.0 6.0 6.5 4.5 167 chr2L 18274014 intron CG42750 - chr2L 18274098 intron CG42750 - chr2L 18274181 intron CG42750 - chr2L_34_18270001 chr2L_18270001 RAL-395 610 chr2L 18286402 18286448 chr2L 18286521 18286567 14 118 0.5 8.5 4.5 2.5 165 chr2L 18286402 intergenic not near genes chr2L 18286484 intergenic not near genes chr2L 18286567 intergenic not near genes chr2L_14_18285001 chr2L_18285001 RAL-395 611 chr2L 18291503 18291534 chr2L 18291627 18291658 14 124 14.0 0.0 7.0 1.8 155 chr2L 18291503 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291580 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291658 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_14_18290001 chr2L_18290001 RAL-395 612 chr2L 18408004 18408012 chr2L 18412814 18412822 Doc 6 4810 15.0 0.0 7.5 0.7 4818 chr2L 18408004 intergenic not near genes chr2L 18410413 intergenic not near genes chr2L 18412822 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-395 613 chr2L 18408013 18408059 chr2L 18412812 18412877 Doc 16 4809 4.5 0.0 2.2 5.0 4864 chr2L 18408013 intergenic not near genes chr2L 18410445 intergenic not near genes chr2L 18412877 intergenic not near genes chr2L_16_18410001 chr2L_18410001 RAL-395 614 chr2L 18439051 18439103 chr2L 18439163 18439215 16 111 5.0 5.5 5.2 2.6 164 chr2L 18439051 intergenic not near genes chr2L 18439133 intergenic not near genes chr2L 18439215 intergenic not near genes chr2L_16_18435001 chr2L_18435001 RAL-395 615 chr2L 18442317 18442376 chr2L 18442421 18442481 12 103 6.5 9.5 8.0 1.3 164 chr2L 18442317 3` UTR RpS26 - chr2L 18442399 3` UTR RpS26 - chr2L 18442481 3` UTR RpS26 - chr2L_12_18440001 chr2L_18440001 RAL-395 616 chr2L 18443358 18443365 chr2L 18443460 18443467 7 102 6.5 18.0 12.2 0.5 109 chr2L 18443358 intergenic RpS26 - chr2L 18443412 intergenic RpS26 - chr2L 18443467 intergenic RpS26 - chr2L_7_18440001 chr2L_18440001 RAL-395 617 chr2L 18449359 18449416 chr2L 18449486 18449542 18 127 9.0 4.5 6.8 2.3 183 chr2L 18449359 intergenic bsf -,ncm - chr2L 18449450 intergenic bsf -,ncm - chr2L 18449542 3` UTR bsf - chr2L_18_18445001 chr2L_18445001 RAL-395 618 chr2L 18538544 18538599 chr2L 18538652 18538706 32 106 0.5 6.0 3.2 7.6 162 chr2L 18538544 intron Pde11 - chr2L 18538625 intron Pde11 - chr2L 18538706 intron Pde11 - chr2L_32_18535001 chr2L_18535001 RAL-395 619 chr2L 18561529 18561580 chr2L 18561656 18561707 24 126 3.5 11.5 7.5 2.8 178 chr2L 18561529 intron Pde11 - chr2L 18561618 intron Pde11 - chr2L 18561707 intron Pde11 - chr2L_24_18560001 chr2L_18560001 RAL-395 620 chr2L 18725387 18725430 chr2L 18725507 18725550 35 118 18.5 12.5 15.5 2.1 163 chr2L 18725387 intron CG10348 - chr2L 18725468 intron CG10348 - chr2L 18725550 intron CG10348 - chr2L_35_18725001 chr2L_18725001 RAL-395 621 chr2L 18753311 18753332 chr2L 18753519 18753529 9 207 17.0 11.5 14.2 0.6 218 chr2L 18753311 intergenic not near genes chr2L 18753420 intergenic not near genes chr2L 18753529 intergenic not near genes chr2L_9_18750001 chr2L_18750001 RAL-395 622 chr2L 18811395 18811437 chr2L 18811503 18811545 14 108 7.0 1.5 4.2 2.7 150 chr2L 18811395 intergenic CG10570 -,CG42502 - chr2L 18811470 intergenic CG10570 -,CG42502 - chr2L 18811545 intergenic not near genes chr2L_14_18810001 chr2L_18810001 RAL-395 623 chr2L 18846419 18846465 chr2L 18846535 18846581 28 114 5.0 13.5 9.2 2.7 162 chr2L 18846419 intron CG17321 + chr2L 18846500 intron CG17321 + chr2L 18846581 intron CG17321 + chr2L_28_18845001 chr2L_18845001 RAL-395 624 chr2L 18883830 18883954 chr2L 18883938 18884057 33 117 2.0 0.0 1.0 16.5 227 chr2L 18883830 intergenic not near genes chr2L 18883944 intergenic not near genes chr2L 18884057 intergenic not near genes chr2L_33_18880001 chr2L_18880001 RAL-395 625 chr2L 18898374 18898425 chr2L 18898481 18898533 37 108 12.5 0.5 6.5 4.9 159 chr2L 18898374 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898533 intergenic not near genes chr2L_37_18895001 chr2L_18895001 RAL-395 626 chr2L 18902597 18902656 chr2L 18902904 18902963 25 304 7.5 4.5 6.0 3.6 366 chr2L 18902597 intergenic not near genes chr2L 18902780 intergenic not near genes chr2L 18902963 intergenic not near genes chr2L_25_18900001 chr2L_18900001 RAL-395 627 chr2L 18981375 18981421 chr2L 18981475 18981530 24 108 4.0 11.5 7.8 2.7 155 chr2L 18981375 intron Swip-1 - chr2L 18981452 intron Swip-1 - chr2L 18981530 intron Swip-1 - chr2L_24_18980001 chr2L_18980001 RAL-395 628 chr2L 19101812 19101870 chr2L 19101924 19101982 26 112 6.0 6.5 6.2 3.6 170 chr2L 19101812 intron Lim3 - chr2L 19101897 intron Lim3 - chr2L 19101982 intron Lim3 - chr2L_26_19100001 chr2L_19100001 RAL-395 629 chr2L 19121875 19121899 chr2L 19121998 19122022 11 123 7.5 8.0 7.8 1.2 147 chr2L 19121875 3` UTR l(2)37Cc - chr2L 19121948 3` UTR l(2)37Cc - chr2L 19122022 3` UTR l(2)37Cc - chr2L_11_19120001 chr2L_19120001 RAL-395 630 chr2L 19145165 19145190 chr2L 19145270 19145295 15 104 16.5 18.5 17.5 0.8 130 chr2L 19145165 intron brat + chr2L 19145230 intron brat + chr2L 19145295 intron brat + chr2L_15_19145001 chr2L_19145001 RAL-395 631 chr2L 19147342 19147401 chr2L 19154403 19154461 297 21 7060 4.0 6.0 5.0 3.5 7119 chr2L 19147342 intron brat + chr2L 19150902 intron brat + chr2L 19154461 intron brat + chr2L_21_19150001 chr2L_19150001 RAL-395 632 chr2L 19163224 19163279 chr2L 19163555 19163575 22 329 9.0 8.0 8.5 2.3 351 chr2L 19163224 intron brat + chr2L 19163400 intron brat + chr2L 19163575 intron brat + chr2L_22_19160001 chr2L_19160001 RAL-395 633 chr2L 19218458 19218510 chr2L 19218564 19218615 26 105 8.5 8.0 8.2 2.8 157 chr2L 19218458 intergenic CR44189 + chr2L 19218536 intergenic CR44189 + chr2L 19218615 intergenic CR44189 + chr2L_26_19215001 chr2L_19215001 RAL-395 634 chr2L 19237278 19237335 chr2L 19237404 19237461 35 126 11.0 10.0 10.5 3.0 183 chr2L 19237278 intergenic not near genes chr2L 19237370 intergenic not near genes chr2L 19237461 intergenic not near genes chr2L_35_19235001 chr2L_19235001 RAL-395 635 chr2L 19246812 19246839 chr2L 19246916 19246943 16 104 10.0 10.0 10.0 1.5 131 chr2L 19246812 intergenic not near genes chr2L 19246878 intergenic not near genes chr2L 19246943 intergenic not near genes chr2L_16_19245001 chr2L_19245001 RAL-395 636 chr2L 19247346 19247390 chr2L 19247450 19247494 7 104 5.0 3.5 4.2 1.3 148 chr2L 19247346 intergenic not near genes chr2L 19247420 intergenic not near genes chr2L 19247494 intergenic not near genes chr2L_7_19245001 chr2L_19245001 RAL-395 637 chr2L 19251663 19251719 chr2L 19251789 19251845 30 125 8.0 9.5 8.8 3.1 182 chr2L 19251663 intergenic not near genes chr2L 19251754 intergenic not near genes chr2L 19251845 intergenic not near genes chr2L_30_19250001 chr2L_19250001 RAL-395 638 chr2L 19345007 19345042 chr2L 19357242 19357277 blood 18 12235 8.5 15.0 11.8 1.4 12270 chr2L 19345007 intron dnt - chr2L 19351142 intron dnt - chr2L 19357277 intron dnt - chr2L_18_19350001 chr2L_19350001 RAL-395 639 chr2L 19357520 19357569 chr2L 19357636 19357685 29 116 12.0 11.5 11.8 2.3 165 chr2L 19357520 intron dnt - chr2L 19357602 intron dnt - chr2L 19357685 intron dnt - chr2L_29_19355001 chr2L_19355001 RAL-395 640 chr2L 19364053 19364079 chr2L 19364159 19364185 12 106 6.5 7.0 6.8 1.5 132 chr2L 19364053 intergenic CG13086 + chr2L 19364119 intergenic CG13086 + chr2L 19364185 intergenic CG13086 + chr2L_12_19360001 chr2L_19360001 RAL-395 641 chr2L 19364080 19364107 chr2L 19364158 19364213 12 102 3.0 7.0 5.0 2.0 133 chr2L 19364080 intergenic CG13086 + chr2L 19364146 intergenic CG13086 + chr2L 19364213 intergenic CG13086 + chr2L_12_19360001 chr2L_19360001 RAL-395 642 chr2L 19378320 19378369 chr2L 19378429 19378478 28 109 8.0 8.0 8.0 3.1 158 chr2L 19378320 intergenic not near genes chr2L 19378399 intergenic not near genes chr2L 19378478 intergenic not near genes chr2L_28_19375001 chr2L_19375001 RAL-395 643 chr2L 19380494 19380527 chr2L 19380600 19380633 15 106 8.5 9.5 9.0 1.5 139 chr2L 19380494 intergenic CG17350 + chr2L 19380564 intergenic CG17350 + chr2L 19380633 intergenic CG17350 + chr2L_15_19380001 chr2L_19380001 RAL-395 644 chr2L 19405592 19405631 chr2L 19405708 19405710 12 113 5.5 6.5 6.0 1.7 118 chr2L 19405592 intron Pax - chr2L 19405651 intron Pax - chr2L 19405710 intron Pax - chr2L_12_19405001 chr2L_19405001 RAL-395 645 chr2L 19407690 19407738 chr2L 19407913 19407961 27 223 8.5 8.0 8.2 2.9 271 chr2L 19407690 intron Pax - chr2L 19407826 intron Pax - chr2L 19407961 intron Pax - chr2L_27_19405001 chr2L_19405001 RAL-395 646 chr2L 19437495 19437531 chr2L 19437613 19437649 18 118 6.0 4.0 5.0 3.0 154 chr2L 19437495 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437649 intron CG10237 - chr2L_18_19435001 chr2L_19435001 RAL-395 647 chr2L 19441041 19441087 chr2L 19441144 19441190 19 102 8.0 10.0 9.0 1.9 149 chr2L 19441041 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441190 5` UTR CG10237 - chr2L_19_19440001 chr2L_19440001 RAL-395 648 chr2L 19544573 19544612 chr2L 19544675 19544715 29 102 11.5 19.5 15.5 1.8 142 chr2L 19544573 exon ref(2)P + chr2L 19544644 exon ref(2)P + chr2L 19544715 exon ref(2)P + chr2L_29_19540001 chr2L_19540001 RAL-395 649 chr2L 19562502 19562562 chr2L 19562609 19562665 12 105 1.0 10.0 5.5 1.8 163 chr2L 19562502 exon Tep5 + chr2L 19562584 intron Tep5 + chr2L 19562665 exon Tep5 + chr2L_12_19560001 chr2L_19560001 RAL-395 650 chr2L 19597246 19597305 chr2L 19597505 19597564 37 258 9.0 7.5 8.2 4.0 318 chr2L 19597246 intron Lar + chr2L 19597405 intron Lar + chr2L 19597564 intron Lar + chr2L_37_19595001 chr2L_19595001 RAL-395 651 chr2L 19601550 19601600 chr2L 19601653 19601703 23 103 2.5 11.5 7.0 2.9 153 chr2L 19601550 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601703 intron,intron Lar +,CR44978 - chr2L_23_19600001 chr2L_19600001 RAL-395 652 chr2L 19608582 19608609 chr2L 19608698 19608724 22 116 5.5 14.0 9.8 2.0 142 chr2L 19608582 intron Lar + chr2L 19608653 intron Lar + chr2L 19608724 intron Lar + chr2L_22_19605001 chr2L_19605001 RAL-395 653 chr2L 19620066 19620132 chr2L 19621081 19621138 jockey 40 1014 6.5 6.5 6.5 5.3 1072 chr2L 19620066 intron Lar + chr2L 19620602 intron Lar + chr2L 19621138 intron Lar + chr2L_40_19620001 chr2L_19620001 RAL-395 654 chr2L 19652543 19652601 chr2L 19674005 19674062 opus 32 21461 3.5 5.5 4.5 5.8 21519 chr2L 19652543 intron Lar + chr2L 19663302 intron Lar + chr2L 19674062 intron Lar + chr2L_32_19660001 chr2L_19660001 RAL-395 655 chr2L 19689037 19689081 chr2L 19689167 19689211 20 129 8.5 11.0 9.8 1.9 174 chr2L 19689037 intron Lar + chr2L 19689124 intron Lar + chr2L 19689211 intron Lar + chr2L_20_19685001 chr2L_19685001 RAL-395 656 chr2L 19697109 19697163 chr2L 19697228 19697282 31 119 8.0 9.5 8.8 3.2 173 chr2L 19697109 intron Lar + chr2L 19697196 intron Lar + chr2L 19697282 intron Lar + chr2L_31_19695001 chr2L_19695001 RAL-395 657 chr2L 19703518 19703549 chr2L 19712680 19712711 roo 24 9162 15.0 0.0 7.5 2.8 9193 chr2L 19703518 intron Lar + chr2L 19708114 intron Lar + chr2L 19712711 intron Lar + chr2L_24_19705001 chr2L_19705001 RAL-395 658 chr2L 19712673 19712717 chr2L 19712783 19712825 23 110 0.0 10.5 5.2 3.7 152 chr2L 19712673 intron Lar + chr2L 19712749 intron Lar + chr2L 19712825 intron Lar + chr2L_23_19710001 chr2L_19710001 RAL-395 659 chr2L 19737345 19737384 chr2L 19740832 19740879 1360 22 3494 8.5 14.5 11.5 1.8 3534 chr2L 19737345 intergenic Nf-YB + chr2L 19739112 intergenic not near genes chr2L 19740879 intergenic not near genes chr2L_22_19735001 chr2L_19735001 RAL-395 660 chr2L 19762781 19762840 chr2L 19763049 19763108 pogo 28 266 6.5 7.0 6.8 3.6 327 chr2L 19762781 exon fbp - chr2L 19762944 intron fbp - chr2L 19763108 intron fbp - chr2L_28_19760001 chr2L_19760001 RAL-395 661 chr2L 19773137 19773183 chr2L 19773250 19773296 24 113 8.0 6.5 7.2 2.9 159 chr2L 19773137 intergenic not near genes chr2L 19773216 intergenic not near genes chr2L 19773296 intergenic not near genes chr2L_24_19770001 chr2L_19770001 RAL-395 662 chr2L 19776638 19776659 chr2L 19776744 19776758 9 105 15.0 4.0 9.5 0.9 120 chr2L 19776638 3` UTR CdGAPr - chr2L 19776698 3` UTR CdGAPr - chr2L 19776758 3` UTR CdGAPr - chr2L_9_19775001 chr2L_19775001 RAL-395 663 chr2L 19824393 19824435 chr2L 19824502 19824544 17 107 5.5 6.0 5.8 2.5 151 chr2L 19824393 intron sick + chr2L 19824468 intron sick + chr2L 19824544 intron sick + chr2L_17_19820001 chr2L_19820001 RAL-395 664 chr2L 19837253 19837297 chr2L 19837359 19837403 35 105 11.5 10.0 10.8 3.0 150 chr2L 19837253 intron sick + chr2L 19837328 intron sick + chr2L 19837403 intron sick + chr2L_35_19835001 chr2L_19835001 RAL-395 665 chr2L 19846235 19846277 chr2L 19846334 19846384 12 104 0.0 13.0 6.5 1.6 149 chr2L 19846235 intron sick + chr2L 19846310 intron sick + chr2L 19846384 intron sick + chr2L_12_19845001 chr2L_19845001 RAL-395 666 chr2L 19890077 19890092 chr2L 19890182 19890197 6 105 7.0 7.0 7.0 0.8 120 chr2L 19890077 intron sick + chr2L 19890137 intron sick + chr2L 19890197 intron sick + chr2L_6_19890001 chr2L_19890001 RAL-395 667 chr2L 19911262 19911320 chr2L 19911376 19911434 31 113 4.0 5.5 4.8 5.3 172 chr2L 19911262 intron,3` UTR sick +,CR43097 - chr2L 19911348 intron,3` UTR sick +,CR43097 - chr2L 19911434 intron,3` UTR sick +,CR43097 - chr2L_31_19910001 chr2L_19910001 RAL-395 668 chr2L 19912743 19912786 chr2L 19912884 19912893 6 136 0.0 6.5 3.2 1.4 150 chr2L 19912743 intron sick + chr2L 19912818 intron sick + chr2L 19912893 intron sick + chr2L_6_19910001 chr2L_19910001 RAL-395 669 chr2L 19947682 19947736 chr2L 19947794 19947848 19 112 0.0 7.0 3.5 4.2 166 chr2L 19947682 intron sick + chr2L 19947765 intron sick + chr2L 19947848 intron sick + chr2L_19_19945001 chr2L_19945001 RAL-395 670 chr2L 19964815 19964862 chr2L 19964926 19964974 29 112 7.0 7.5 7.2 3.5 159 chr2L 19964815 intron CG10680 + chr2L 19964894 exon CG10680 + chr2L 19964974 exon CG10680 + chr2L_29_19960001 chr2L_19960001 RAL-395 671 chr2L 19973331 19973387 chr2L 19973434 19973490 42 103 8.0 8.5 8.2 4.6 159 chr2L 19973331 intron CG43861 - chr2L 19973410 intron CG43861 - chr2L 19973490 intron CG43861 - chr2L_42_19970001 chr2L_19970001 RAL-395 672 chr2L 20005845 20005904 chr2L 20010947 20011006 flea 24 5101 8.5 10.5 9.5 2.3 5161 chr2L 20005845 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20011006 intron CG43861 - chr2L_24_20005001 chr2L_20005001 RAL-395 673 chr2L 20022065 20022100 chr2L 20022203 20022239 13 138 7.0 5.5 6.2 1.8 174 chr2L 20022065 intergenic not near genes chr2L 20022152 intergenic not near genes chr2L 20022239 intergenic not near genes chr2L_13_20020001 chr2L_20020001 RAL-395 674 chr2L 20026588 20026625 chr2L 20026696 20026732 17 108 5.5 7.0 6.2 2.4 144 chr2L 20026588 intergenic not near genes chr2L 20026660 intergenic not near genes chr2L 20026732 intergenic not near genes chr2L_17_20025001 chr2L_20025001 RAL-395 675 chr2L 20034603 20034612 chr2L 20034715 20034724 5 112 0.0 10.5 5.2 0.8 121 chr2L 20034603 intron sNPF + chr2L 20034664 intron sNPF + chr2L 20034724 intron sNPF + chr2L_5_20030001 chr2L_20030001 RAL-395 676 chr2L 20041403 20041459 chr2L 20041514 20041570 25 111 9.0 7.5 8.2 2.7 167 chr2L 20041403 intron sNPF + chr2L 20041486 intron sNPF + chr2L 20041570 intron sNPF + chr2L_25_20040001 chr2L_20040001 RAL-395 677 chr2L 20057028 20057075 chr2L 20057131 20057178 14 99 8.0 7.5 7.8 1.6 150 chr2L 20057028 intergenic not near genes chr2L 20057103 intergenic not near genes chr2L 20057178 intergenic not near genes chr2L_14_20055001 chr2L_20055001 RAL-395 678 chr2L 20079490 20079543 chr2L 20079637 20079689 24 147 12.0 3.0 7.5 2.8 199 chr2L 20079490 intron,intron neb +,fok - chr2L 20079590 intron,intron neb +,fok - chr2L 20079689 intron,intron neb +,fok - chr2L_24_20075001 chr2L_20075001 RAL-395 679 chr2L 20098688 20098743 chr2L 20098997 20099053 21 310 4.0 7.0 5.5 3.2 365 chr2L 20098688 intron Kua + chr2L 20098870 intron Kua + chr2L 20099053 intron Kua + chr2L_21_20095001 chr2L_20095001 RAL-395 680 chr2L 20119494 20119511 chr2L 20119596 20119613 7 98 9.5 18.0 13.8 0.5 119 chr2L 20119494 intergenic not near genes chr2L 20119554 intergenic not near genes chr2L 20119613 intergenic not near genes chr2L_7_20115001 chr2L_20115001 RAL-395 681 chr2L 20122612 20122649 chr2L 20122728 20122766 13 117 4.5 2.5 3.5 2.9 154 chr2L 20122612 intergenic not near genes chr2L 20122689 intergenic not near genes chr2L 20122766 intergenic not near genes chr2L_13_20120001 chr2L_20120001 RAL-395 682 chr2L 20236483 20236537 chr2L 20236585 20236639 24 102 11.5 7.5 9.5 2.3 156 chr2L 20236483 intergenic not near genes chr2L 20236561 intergenic not near genes chr2L 20236639 intergenic not near genes chr2L_24_20235001 chr2L_20235001 RAL-395 683 chr2L 20250901 20250952 chr2L 20251005 20251055 31 104 10.5 9.5 10.0 2.8 154 chr2L 20250901 intergenic not near genes chr2L 20250978 intergenic not near genes chr2L 20251055 intergenic not near genes chr2L_31_20250001 chr2L_20250001 RAL-395 684 chr2L 20269675 20269728 chr2L 20269786 20269839 29 109 8.0 12.0 10.0 2.6 164 chr2L 20269675 intergenic not near genes chr2L 20269757 intergenic not near genes chr2L 20269839 intergenic not near genes chr2L_29_20265001 chr2L_20265001 RAL-395 685 chr2L 20272088 20272140 chr2L 20282825 20282877 copia 30 10736 8.5 11.5 10.0 2.7 10789 chr2L 20272088 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282877 intergenic not near genes chr2L_30_20275001 chr2L_20275001 RAL-395 686 chr2L 20296508 20296539 chr2L 20296592 20296646 17 106 0.0 4.5 2.2 5.3 138 chr2L 20296508 intergenic CR43414 - chr2L 20296577 intergenic CR43414 - chr2L 20296646 3` UTR CR43414 - chr2L_17_20295001 chr2L_20295001 RAL-395 687 chr2L 20298800 20298854 chr2L 20298909 20298963 31 108 7.5 6.5 7.0 3.9 163 chr2L 20298800 intergenic not near genes chr2L 20298882 intergenic not near genes chr2L 20298963 intergenic not near genes chr2L_31_20295001 chr2L_20295001 RAL-395 688 chr2L 20299400 20299445 chr2L 20299549 20299594 25 148 0.0 17.5 8.8 2.6 194 chr2L 20299400 intergenic not near genes chr2L 20299497 intergenic not near genes chr2L 20299594 intergenic not near genes chr2L_25_20295001 chr2L_20295001 RAL-395 689 chr2L 20299975 20300021 chr2L 20300089 20300133 23 112 9.5 8.0 8.8 2.3 158 chr2L 20299975 intergenic not near genes chr2L 20300054 intergenic not near genes chr2L 20300133 intergenic not near genes chr2L_23_20300001 chr2L_20300001 RAL-395 690 chr2L 20302973 20303004 chr2L 20303089 20303119 9 115 5.0 0.0 2.5 2.6 146 chr2L 20302973 intergenic not near genes chr2L 20303046 intergenic not near genes chr2L 20303119 intergenic not near genes chr2L_9_20300001 chr2L_20300001 RAL-395 691 chr2L 20303159 20303187 chr2L 20310653 20310676 blood 7 7493 0.0 9.5 4.8 1.2 7517 chr2L 20303159 intergenic not near genes chr2L 20306918 intergenic not near genes chr2L 20310676 intergenic not near genes chr2L_7_20305001 chr2L_20305001 RAL-395 692 chr2L 20310874 20310893 chr2L 20310978 20310999 11 106 7.0 13.5 10.2 1.0 125 chr2L 20310874 intergenic spir + chr2L 20310936 intergenic spir + chr2L 20310999 intergenic spir + chr2L_11_20310001 chr2L_20310001 RAL-395 693 chr2L 20312513 20312566 chr2L 20312624 20312677 5 111 4.5 2.5 3.5 1.1 164 chr2L 20312513 intron spir + chr2L 20312595 intron spir + chr2L 20312677 intron spir + chr2L_5_20310001 chr2L_20310001 RAL-395 694 chr2L 20321512 20321532 chr2L 20321615 20321635 15 103 13.0 17.0 15.0 0.9 123 chr2L 20321512 intron spir + chr2L 20321574 intron spir + chr2L 20321635 intron spir + chr2L_15_20320001 chr2L_20320001 RAL-395 695 chr2L 20372192 20372224 chr2L 20372468 20372500 pogo 17 276 8.5 8.0 8.2 1.8 308 chr2L 20372192 intergenic Ugt37a1 - chr2L 20372346 intergenic Ugt37a1 - chr2L 20372500 exon Ugt37a1 - chr2L_17_20370001 chr2L_20370001 RAL-395 696 chr2L 20389122 20389125 chr2L 20389527 20389530 6 405 12.5 23.0 17.8 0.3 408 chr2L 20389122 intron CG10947 - chr2L 20389326 intron CG10947 - chr2L 20389530 intron CG10947 - chr2L_6_20385001 chr2L_20385001 RAL-395 697 chr2L 20389294 20389336 chr2L 20389405 20389443 13 110 0.0 0.0 0.0 13.0 149 chr2L 20389294 intron CG10947 - chr2L 20389368 intron CG10947 - chr2L 20389443 intron CG10947 - chr2L_13_20385001 chr2L_20385001 RAL-395 698 chr2L 20497432 20497485 chr2L 20497633 20497643 32 189 7.0 11.0 9.0 3.2 211 chr2L 20497432 intergenic not near genes chr2L 20497538 intergenic not near genes chr2L 20497643 intergenic not near genes chr2L_32_20495001 chr2L_20495001 RAL-395 699 chr2L 20498665 20498708 chr2L 20498790 20498833 20 125 11.0 7.5 9.2 2.0 168 chr2L 20498665 intergenic not near genes chr2L 20498749 intergenic not near genes chr2L 20498833 intergenic not near genes chr2L_20_20495001 chr2L_20495001 RAL-395 700 chr2L 20513574 20513595 chr2L 20513692 20513713 12 118 6.5 5.0 5.8 1.8 139 chr2L 20513574 intergenic CR45702 + chr2L 20513644 intergenic CR45702 + chr2L 20513713 intergenic CR45702 + chr2L_12_20510001 chr2L_20510001 RAL-395 701 chr2L 20525820 20525831 chr2L 20525922 20525934 13 103 20.0 17.0 18.5 0.7 114 chr2L 20525820 intergenic not near genes chr2L 20525877 intergenic not near genes chr2L 20525934 intergenic not near genes chr2L_13_20525001 chr2L_20525001 RAL-395 702 chr2L 20549105 20549155 chr2L 20549213 20549263 28 107 3.5 8.0 5.8 4.1 158 chr2L 20549105 intergenic not near genes chr2L 20549184 intergenic not near genes chr2L 20549263 intergenic not near genes chr2L_28_20545001 chr2L_20545001 RAL-395 703 chr2L 20553161 20553218 chr2L 20553263 20553317 28 102 11.5 6.0 8.8 2.9 156 chr2L 20553161 intergenic not near genes chr2L 20553239 intergenic not near genes chr2L 20553317 intergenic not near genes chr2L_28_20550001 chr2L_20550001 RAL-395 704 chr2L 20563528 20563559 chr2L 20563631 20563662 19 103 6.0 8.0 7.0 2.4 134 chr2L 20563528 intron CR45347 + chr2L 20563595 intron CR45347 + chr2L 20563662 intron CR45347 + chr2L_19_20560001 chr2L_20560001 RAL-395 705 chr2L 20568636 20568687 chr2L 20569052 20569103 X-element 26 416 8.0 4.0 6.0 3.7 467 chr2L 20568636 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569103 intron CR45347 + chr2L_26_20565001 chr2L_20565001 RAL-395 706 chr2L 20576194 20576245 chr2L 20583687 20583738 blood 23 7494 8.0 6.5 7.2 2.8 7544 chr2L 20576194 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583738 3` UTR CR44909 - chr2L_23_20575001 chr2L_20575001 RAL-395 707 chr2L 20607613 20607666 chr2L 20607718 20607771 33 99 9.0 8.5 8.8 3.4 158 chr2L 20607613 intron,3` UTR CR44909 -,CR43608 - chr2L 20607692 intron,3` UTR CR44909 -,CR43608 - chr2L 20607771 intron,3` UTR CR44909 -,CR43608 - chr2L_33_20605001 chr2L_20605001 RAL-395 708 chr2L 20617332 20617389 chr2L 20618366 20618423 26 1033 5.0 8.5 6.8 3.3 1091 chr2L 20617332 intron CR44909 - chr2L 20617878 intron CR44909 - chr2L 20618423 intron,3` UTR CR44909 -,mir-288 - chr2L_26_20615001 chr2L_20615001 RAL-395 709 chr2L 20643316 20643336 chr2L 20643474 20643494 11 158 8.5 9.5 9.0 1.1 178 chr2L 20643316 intergenic phr6-4 -,CG17470 - chr2L 20643405 3` UTR phr6-4 - chr2L 20643494 3` UTR phr6-4 - chr2L_11_20640001 chr2L_20640001 RAL-395 710 chr2L 20672148 20672199 chr2L 20672257 20672278 27 108 9.5 0.0 4.8 4.7 130 chr2L 20672148 intron CG31678 - chr2L 20672213 intron CG31678 - chr2L 20672278 intron CG31678 - chr2L_27_20670001 chr2L_20670001 RAL-395 711 chr2L 20674805 20674864 chr2L 20674916 20674968 17 105 5.0 0.5 2.8 4.5 163 chr2L 20674805 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674968 intron CG31678 - chr2L_17_20670001 chr2L_20670001 RAL-395 712 chr2L 20690593 20690649 chr2L 20691000 20691056 36 406 5.5 5.0 5.2 5.8 463 chr2L 20690593 intron Hr38 - chr2L 20690824 intron Hr38 - chr2L 20691056 intron Hr38 - chr2L_36_20690001 chr2L_20690001 RAL-395 713 chr2L 20695769 20695829 chr2L 20695883 20695943 22 114 5.0 5.5 5.2 3.5 174 chr2L 20695769 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695943 intron Hr38 - chr2L_22_20695001 chr2L_20695001 RAL-395 714 chr2L 20708754 20708786 chr2L 20708965 20708997 18 211 14.0 6.0 10.0 1.6 243 chr2L 20708754 intron Hr38 - chr2L 20708876 intron Hr38 - chr2L 20708997 intron Hr38 - chr2L_18_20705001 chr2L_20705001 RAL-395 715 chr2L 20793036 20793112 chr2L 20793206 20793264 19 166 0.5 9.0 4.8 3.3 228 chr2L 20793036 intron vari - chr2L 20793150 intron vari - chr2L 20793264 intron vari - chr2L_19_20790001 chr2L_20790001 RAL-395 716 chr2L 20835789 20835832 chr2L 20836525 20836575 Quasimodo 10 742 6.0 7.0 6.5 1.3 786 chr2L 20835789 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836575 intergenic Spn38F - chr2L_10_20835001 chr2L_20835001 RAL-395 717 chr2L 20891513 20891545 chr2L 20896640 20896672 jockey 11 5127 5.5 8.5 7.0 1.4 5159 chr2L 20891513 intron,intron CG43739 -,sky - chr2L 20894092 intron,intron CG43739 -,sky - chr2L 20896672 intron,intron CG43739 -,sky - chr2L_11_20890001 chr2L_20890001 RAL-395 718 chr2L 20901429 20901487 chr2L 20902619 20902664 1360 11 1186 8.5 10.5 9.5 1.0 1235 chr2L 20901429 intron,intron CG43739 -,sky - chr2L 20902046 intron,intron CG43739 -,sky - chr2L 20902664 intron,intron CG43739 -,sky - chr2L_11_20900001 chr2L_20900001 RAL-395 719 chr2L 20946919 20946961 chr2L 20947031 20947074 23 113 7.5 11.5 9.5 2.2 155 chr2L 20946919 intergenic CR44606 - chr2L 20946996 intergenic CR44606 - chr2L 20947074 intergenic CR44606 - chr2L_23_20945001 chr2L_20945001 RAL-395 720 chr2L 20976628 20976660 chr2L 20981469 20981501 X-element 17 4840 9.5 15.0 12.2 1.3 4873 chr2L 20976628 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981501 intron CG42238 - chr2L_17_20975001 chr2L_20975001 RAL-395 721 chr2L 21020252 21020305 chr2L 21023953 21024007 NOF 31 3703 6.5 9.5 8.0 3.4 3755 chr2L 21020252 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21024007 intron CG42238 - chr2L_31_21020001 chr2L_21020001 RAL-395 722 chr2L 21041113 21041165 chr2L 21049400 21049451 Tirant 21 8283 7.5 9.0 8.2 2.3 8338 chr2L 21041113 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049451 intron CG42238 - chr2L_21_21045001 chr2L_21045001 RAL-395 723 chr2L 21071680 21071695 chr2L 23075321 23075325 4 2003638 16.5 31.0 23.8 0.2 2003645 chr2L 21071680 intergenic CG9265 - chr2L 22073502 intergenic not near genes chr2L 23075325 intergenic not near genes chr2L_4_22070001 chr2L_22070001 RAL-395 724 chr2L 21123193 21123209 chr2L 21123299 21123315 6 106 2.0 6.5 4.2 1.2 122 chr2L 21123193 intron Nhe2 + chr2L 21123254 intron Nhe2 + chr2L 21123315 intron Nhe2 + chr2L_6_21120001 chr2L_21120001 RAL-395 725 chr2L 21193318 21193377 chr2L 21193428 21193469 33 104 7.0 7.5 7.2 4.0 151 chr2L 21193318 intron Ret - chr2L 21193394 intron Ret - chr2L 21193469 intron Ret - chr2L_33_21190001 chr2L_21190001 RAL-395 726 chr2L 21347533 21347570 chr2L 21355031 21355068 blood 7 7498 9.0 0.5 4.8 1.2 7535 chr2L 21347533 intron Tsp39D + chr2L 21351300 intron Tsp39D + chr2L 21355068 intron Tsp39D + chr2L_7_21350001 chr2L_21350001 RAL-395 727 chr2L 21355584 21355627 chr2L 21355755 21355798 18 171 9.0 4.5 6.8 2.3 214 chr2L 21355584 exon Tsp39D + chr2L 21355691 intron Tsp39D + chr2L 21355798 intron Tsp39D + chr2L_18_21355001 chr2L_21355001 RAL-395 728 chr2L 21396587 21396613 chr2L 21396847 21396874 9 261 13.5 14.0 13.8 0.6 287 chr2L 21396587 intergenic not near genes chr2L 21396730 intergenic not near genes chr2L 21396874 intergenic not near genes chr2L_9_21395001 chr2L_21395001 RAL-395 729 chr2L 21597027 21597057 chr2L 21604797 21604827 roo 12 7770 6.0 12.0 9.0 1.2 7800 chr2L 21597027 intergenic not near genes chr2L 21600927 intergenic not near genes chr2L 21604827 intergenic not near genes chr2L_12_21600001 chr2L_21600001 RAL-395 730 chr2L 21653167 21653222 chr2L 21656497 21656551 invader4 15 3330 8.5 3.0 5.8 2.2 3384 chr2L 21653167 intergenic not near genes chr2L 21654859 intergenic not near genes chr2L 21656551 intergenic not near genes chr2L_15_21650001 chr2L_21650001 RAL-395 731 chr2L 21684274 21684331 chr2L 21684563 21684620 23 288 3.0 7.0 5.0 3.8 346 chr2L 21684274 intron CG31619 + chr2L 21684447 intron CG31619 + chr2L 21684620 5` UTR CG31619 + chr2L_23_21680001 chr2L_21680001 RAL-395 732 chr2L 21685762 21685814 chr2L 21685863 21685916 24 101 6.5 5.5 6.0 3.4 154 chr2L 21685762 intron CG31619 + chr2L 21685839 intron CG31619 + chr2L 21685916 intron CG31619 + chr2L_24_21685001 chr2L_21685001 RAL-395 733 chr2L 21691805 21691830 chr2L 21698301 21698326 Burdock 8 6496 6.0 1.5 3.8 1.7 6521 chr2L 21691805 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698326 intron CG31619 + chr2L_8_21695001 chr2L_21695001 RAL-395 734 chr2L 21750077 21750129 chr2L 21750423 21750478 12 346 3.0 3.5 3.2 2.9 401 chr2L 21750077 intron step - chr2L 21750278 intron step - chr2L 21750478 intron step - chr2L_12_21750001 chr2L_21750001 RAL-395 735 chr2L 21754644 21754686 chr2L 21754751 21754793 13 107 7.5 7.0 7.2 1.6 149 chr2L 21754644 intron step - chr2L 21754718 intron step - chr2L 21754793 intron step - chr2L_13_21750001 chr2L_21750001 RAL-395 736 chr2L 21771959 21772012 chr2L 21772064 21772117 15 105 5.0 4.0 4.5 2.7 158 chr2L 21771959 intron CG31612 - chr2L 21772038 intron CG31612 - chr2L 21772117 intron CG31612 - chr2L_15_21770001 chr2L_21770001 RAL-395 737 chr2L 21819303 21819357 chr2L 21819416 21819471 25 114 7.0 4.0 5.5 3.8 168 chr2L 21819303 intergenic CR44786 + chr2L 21819387 intergenic CR44786 + chr2L 21819471 intergenic CR44786 + chr2L_25_21815001 chr2L_21815001 RAL-395 738 chr2L 21824100 21824153 chr2L 21824213 21824266 17 112 0.0 7.0 3.5 3.8 166 chr2L 21824100 intergenic not near genes chr2L 21824183 intergenic not near genes chr2L 21824266 intergenic not near genes chr2L_17_21820001 chr2L_21820001 RAL-395 739 chr2L 21869066 21869102 chr2L 21869181 21869217 17 114 12.5 13.0 12.8 1.2 151 chr2L 21869066 5` UTR CR44917 + chr2L 21869142 5` UTR CR44917 + chr2L 21869217 5` UTR CR44917 + chr2L_17_21865001 chr2L_21865001 RAL-395 740 chr2L 21933898 21933924 chr2L 21934005 21934030 15 107 17.5 22.5 20.0 0.7 132 chr2L 21933898 intergenic not near genes chr2L 21933964 intergenic not near genes chr2L 21934030 intergenic not near genes chr2L_15_21930001 chr2L_21930001 RAL-395 741 chr2L 21966970 21967014 chr2L 21967123 21967167 25 152 10.5 4.5 7.5 2.9 197 chr2L 21966970 intergenic not near genes chr2L 21967068 intergenic not near genes chr2L 21967167 intergenic not near genes chr2L_25_21965001 chr2L_21965001 RAL-395 742 chr2L 21981663 21981708 chr2L 21990854 21990898 roo 25 9191 5.0 14.0 9.5 2.4 9235 chr2L 21981663 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990898 exon CG2528 - chr2L_25_21985001 chr2L_21985001 RAL-395 743 chr2L 21996915 21996972 chr2L 21997022 21997079 27 107 5.0 3.0 4.0 5.4 164 chr2L 21996915 intergenic not near genes chr2L 21996997 intergenic not near genes chr2L 21997079 intergenic not near genes chr2L_27_21995001 chr2L_21995001 RAL-395 744 chr2L 22001621 22001670 chr2L 22001723 22001767 18 102 3.5 8.5 6.0 2.6 146 chr2L 22001621 intergenic not near genes chr2L 22001694 intergenic not near genes chr2L 22001767 intergenic not near genes chr2L_18_22000001 chr2L_22000001 RAL-395 745 chr2L 22007930 22007948 chr2L 22008037 22008056 7 108 6.5 11.5 9.0 0.7 126 chr2L 22007930 intergenic not near genes chr2L 22007993 intergenic not near genes chr2L 22008056 intergenic not near genes chr2L_7_22005001 chr2L_22005001 RAL-395 746 chr2L 22025800 22025851 chr2L 22025905 22025956 20 104 6.5 5.0 5.8 2.9 156 chr2L 22025800 intergenic tio + chr2L 22025878 intergenic tio + chr2L 22025956 intergenic tio + chr2L_20_22025001 chr2L_22025001 RAL-395 747 chr2L 22047230 22047253 chr2L 22047381 22047404 8 151 9.0 9.5 9.2 0.8 174 chr2L 22047230 intergenic not near genes chr2L 22047317 intergenic not near genes chr2L 22047404 intergenic not near genes chr2L_8_22045001 chr2L_22045001 RAL-395 748 chr2L 22191330 22191375 chr2L 22198308 22198354 12 6978 64.0 48.5 56.2 0.2 7024 chr2L 22191330 intron Ir40a - chr2L 22194842 intron Ir40a - chr2L 22198354 intron Ir40a - chr2L_12_22190001 chr2L_22190001 RAL-395 749 chr2L 22294332 22294384 chr2L 22294446 22294498 14 113 5.5 4.5 5.0 2.3 166 chr2L 22294332 intergenic not near genes chr2L 22294415 intergenic not near genes chr2L 22294498 intergenic not near genes chr2L_14_22290001 chr2L_22290001 RAL-395 750 chr2L 22581944 22581998 chr2L 22583759 22583813 S-element 14 1812 8.0 6.5 7.2 1.7 1869 chr2L 22581944 intron CG17494 + chr2L 22582878 intron CG17494 + chr2L 22583813 intron CG17494 + chr2L_14_22580001 chr2L_22580001 RAL-395 751 chr2L 22776396 22776452 chr2L 22778211 22778267 S-element 22 1815 5.5 5.0 5.2 3.5 1871 chr2L 22776396 intergenic not near genes chr2L 22777332 intergenic not near genes chr2L 22778267 intergenic not near genes chr2L_22_22775001 chr2L_22775001 RAL-395 752 chr2L 22927806 22927839 chr2L 22928034 22928067 18 228 45.0 50.5 47.8 0.4 261 chr2L 22927806 intron lt + chr2L 22927936 intron lt + chr2L 22928067 intron lt + chr2L_18_22925001 chr2L_22925001 RAL-395 753 chr2L 22983915 22983970 chr2L 22984017 22984072 22 102 6.5 9.5 8.0 2.4 157 chr2L 22983915 intron cta + chr2L 22983994 intron cta + chr2L 22984072 intron cta + chr2L_22_22980001 chr2L_22980001 RAL-395 754 chr2L 23168865 23168886 chr2L 23168967 23168980 16 101 9.0 23.5 16.2 0.9 115 chr2L 23168865 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168922 intron CG12567 - chr2L 23168980 intron CG12567 - chr2L_16_23165001 chr2L_23165001 RAL-395 755 chr2L 23233918 23233923 chr2L 23234023 23234028 4 105 32.5 20.5 26.5 0.1 110 chr2L 23233918 intergenic not near genes chr2L 23233973 intergenic not near genes chr2L 23234028 intergenic not near genes chr2L_4_23230001 chr2L_23230001 RAL-395 756 chr2R 469938 469976 chr2R 473204 473243 F-element 12 3267 4.0 5.0 4.5 2.2 3305 chr2R 469938 intergenic not near genes chr2R 471590 intergenic not near genes chr2R 473243 intergenic not near genes chr2R_12_470001 chr2R_470001 RAL-395 757 chr2R 529315 529352 chr2R 537966 538003 Max-element 15 8651 6.5 9.0 7.8 1.7 8688 chr2R 529315 intron CG40378 + chr2R 533659 intron CG40378 + chr2R 538003 intron CG40378 + chr2R_15_530001 chr2R_530001 RAL-395 758 chr2R 1071339 1071361 chr2R 1071450 1071472 7 111 10.0 3.0 6.5 0.9 133 chr2R 1071339 intergenic CR41257 - chr2R 1071406 intergenic CR41257 - chr2R 1071472 intergenic CR41257 - chr2R_7_1070001 chr2R_1070001 RAL-395 759 chr2R 1516580 1516600 chr2R 1521334 1521354 1731 20 4754 36.0 14.5 25.2 0.8 4774 chr2R 1516580 exon Maf1 - chr2R 1518967 intron Maf1 - chr2R 1521354 5` UTR Maf1 - chr2R_20_1515001 chr2R_1515001 RAL-395 760 chr2R 2124512 2124532 chr2R 2124621 2124641 7 109 2.5 11.5 7.0 0.9 129 chr2R 2124512 intron CG17684 - chr2R 2124576 intron CG17684 - chr2R 2124641 intron CG17684 - chr2R_7_2120001 chr2R_2120001 RAL-395 761 chr2R 2498960 2499006 chr2R 2508133 2508179 roo 13 9172 7.0 4.5 5.8 1.9 9219 chr2R 2498960 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508179 intron MFS17 - chr2R_13_2500001 chr2R_2500001 RAL-395 762 chr2R 1373050 1373073 chr2R 2589322 2589346 Cr1a 8 1216272 31.0 18.5 24.8 0.3 1216296 chr2R 1373050 intron l(2)41Ab + chr2R 1981198 intron CG17684 - chr2R 2589346 intergenic not near genes chr2R_8_1980001 chr2R_1980001 RAL-395 763 chr2R 3144059 3144105 chr2R 3393363 3393409 Doc 10 249304 25.5 38.0 31.8 0.3 249350 chr2R 3144059 intron CG42596 + chr2R 3268734 intergenic not near genes chr2R 3393409 intergenic not near genes chr2R_10_3265001 chr2R_3265001 RAL-395 764 chr2R 3291923 3292103 chr2R 3915118 3915290 13 623190 32.5 21.0 26.8 0.5 623367 chr2R 3291923 intergenic not near genes chr2R 3603606 intergenic not near genes chr2R 3915290 intron uex - chr2R_13_3600001 chr2R_3600001 RAL-395 765 chr2R 3293718 3293752 chr2R 3293822 3293842 6 101 11.0 3.0 7.0 0.8 124 chr2R 3293718 intergenic not near genes chr2R 3293780 intergenic not near genes chr2R 3293842 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-395 766 chr2R 3532596 3532620 chr2R 3536063 3536089 Doc 5 3469 2.0 4.5 3.2 1.2 3493 chr2R 3532596 intergenic not near genes chr2R 3534342 intergenic not near genes chr2R 3536089 intergenic not near genes chr2R_5_3530001 chr2R_3530001 RAL-395 767 chr2R 473354 473360 chr2R 4150692 4150698 5 3677338 22.5 22.0 22.2 0.2 3677344 chr2R 473354 intergenic not near genes chr2R 2312026 intergenic not near genes chr2R 4150698 intergenic not near genes chr2R_5_2310001 chr2R_2310001 RAL-395 768 chr2R 4374466 4374472 chr2R 4374572 4374582 6 108 8.0 17.0 12.5 0.4 116 chr2R 4374466 intron Gprk1 - chr2R 4374524 intron Gprk1 - chr2R 4374582 intron Gprk1 - chr2R_6_4370001 chr2R_4370001 RAL-395 769 chr2R 4518074 4518113 chr2R 4522240 4522279 23 4166 59.5 74.5 67.0 0.3 4205 chr2R 4518074 intergenic not near genes chr2R 4520176 intergenic not near genes chr2R 4522279 intergenic not near genes chr2R_23_4520001 chr2R_4520001 RAL-395 770 chr2R 4604525 4604580 chr2R 4604630 4604686 15 105 7.5 6.5 7.0 1.9 161 chr2R 4604525 intron p120ctn + chr2R 4604606 intron p120ctn + chr2R 4604686 intron p120ctn + chr2R_15_4600001 chr2R_4600001 RAL-395 771 chr2R 4621290 4621344 chr2R 4621856 4621910 22 565 6.0 9.5 7.8 2.5 620 chr2R 4621290 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621910 3` UTR CR44101 - chr2R_22_4620001 chr2R_4620001 RAL-395 772 chr2R 4622930 4622962 chr2R 4624115 4624147 1360 12 1185 15.5 9.5 12.5 0.9 1217 chr2R 4622930 intergenic CR44101 - chr2R 4623538 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_12_4620001 chr2R_4620001 RAL-395 773 chr2R 4622963 4622984 chr2R 4624111 4624169 1360 8 1176 10.5 8.5 9.5 0.8 1206 chr2R 4622963 intergenic CR44101 - chr2R 4623566 intergenic not near genes chr2R 4624169 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-395 774 chr2R 4624619 4624671 chr2R 4626550 4626602 Bica 25 1931 8.0 8.0 8.0 2.8 1983 chr2R 4624619 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626602 intergenic not near genes chr2R_25_4625001 chr2R_4625001 RAL-395 775 chr2R 4688103 4688132 chr2R 4688222 4688251 10 119 6.0 9.5 7.8 1.1 148 chr2R 4688103 intergenic not near genes chr2R 4688177 intergenic not near genes chr2R 4688251 intergenic not near genes chr2R_10_4685001 chr2R_4685001 RAL-395 776 chr2R 4750318 4750374 chr2R 4751501 4751557 1360 18 1183 3.5 7.5 5.5 2.8 1239 chr2R 4750318 intron conu + chr2R 4750938 intron conu + chr2R 4751557 intron conu + chr2R_18_4750001 chr2R_4750001 RAL-395 777 chr2R 4876684 4876705 chr2R 4876806 4876827 11 120 12.0 18.0 15.0 0.7 143 chr2R 4876684 intergenic not near genes chr2R 4876756 intergenic not near genes chr2R 4876827 intergenic not near genes chr2R_11_4875001 chr2R_4875001 RAL-395 778 chr2R 4887591 4887645 chr2R 4887813 4887866 20 222 7.0 8.0 7.5 2.4 275 chr2R 4887591 intergenic not near genes chr2R 4887728 intergenic not near genes chr2R 4887866 intergenic not near genes chr2R_20_4885001 chr2R_4885001 RAL-395 779 chr2R 4942026 4942074 chr2R 4942176 4942192 8 147 7.0 7.0 7.0 1.0 166 chr2R 4942026 intron Ir41a + chr2R 4942109 intron Ir41a + chr2R 4942192 intron Ir41a + chr2R_8_4940001 chr2R_4940001 RAL-395 780 chr2R 5075200 5075220 chr2R 5075354 5075374 9 154 19.0 0.0 9.5 0.9 174 chr2R 5075200 intergenic not near genes chr2R 5075287 intergenic not near genes chr2R 5075374 intergenic not near genes chr2R_9_5075001 chr2R_5075001 RAL-395 781 chr2R 5075240 5075372 chr2R 5075757 5075814 22 475 0.0 12.0 6.0 3.1 574 chr2R 5075240 intergenic not near genes chr2R 5075527 intergenic not near genes chr2R 5075814 intergenic not near genes chr2R_22_5075001 chr2R_5075001 RAL-395 782 chr2R 5080770 5080816 chr2R 5080882 5080933 13 115 6.0 9.0 7.5 1.5 163 chr2R 5080770 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080933 intergenic not near genes chr2R_13_5080001 chr2R_5080001 RAL-395 783 chr2R 5125222 5125276 chr2R 5125566 5125620 23 344 8.5 8.0 8.2 2.5 398 chr2R 5125222 intron gus - chr2R 5125421 intron gus - chr2R 5125620 intron gus - chr2R_23_5125001 chr2R_5125001 RAL-395 784 chr2R 5237322 5237363 chr2R 5237430 5237471 14 108 6.0 0.0 3.0 3.5 149 chr2R 5237322 intron Nipped-A - chr2R 5237396 intron Nipped-A - chr2R 5237471 intron Nipped-A - chr2R_14_5235001 chr2R_5235001 RAL-395 785 chr2R 5256734 5256790 chr2R 5256848 5256904 69 113 17.0 13.5 15.2 4.3 170 chr2R 5256734 intergenic not near genes chr2R 5256819 intergenic not near genes chr2R 5256904 intergenic not near genes chr2R_69_5255001 chr2R_5255001 RAL-395 786 chr2R 5302087 5302154 chr2R 5304209 5304271 48 2119 80.5 113.5 97.0 0.5 2184 chr2R 5302087 intergenic not near genes chr2R 5303179 intergenic not near genes chr2R 5304271 intergenic not near genes chr2R_48_5300001 chr2R_5300001 RAL-395 787 chr2R 5417969 5418027 chr2R 5420627 5420685 Burdock 23 2658 5.5 8.0 6.8 2.9 2716 chr2R 5417969 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420685 intron laccase2 + chr2R_23_5415001 chr2R_5415001 RAL-395 788 chr2R 5491639 5491691 chr2R 5491758 5491810 41 119 8.0 7.0 7.5 4.8 171 chr2R 5491639 intron CG30440 - chr2R 5491724 intron CG30440 - chr2R 5491810 intron CG30440 - chr2R_41_5490001 chr2R_5490001 RAL-395 789 chr2R 5543197 5543222 chr2R 5547307 5547332 invader1 14 4110 0.0 11.0 5.5 2.2 4135 chr2R 5543197 intron CG30438 + chr2R 5545264 intron CG30438 + chr2R 5547332 intron CG30438 + chr2R_14_5545001 chr2R_5545001 RAL-395 790 chr2R 5581403 5581418 chr2R 5627637 5627650 13 46235 8.0 29.5 18.8 0.7 46247 chr2R 5581403 intergenic not near genes chr2R 5604526 intron Fis1 - chr2R 5627650 intergenic not near genes chr2R_13_5600001 chr2R_5600001 RAL-395 791 chr2R 5649110 5649112 chr2R 5701456 5701457 4 52346 30.5 4.5 17.5 0.2 52347 chr2R 5649110 intron CG11665 - chr2R 5675284 intergenic not near genes chr2R 5701457 intergenic not near genes chr2R_4_5675001 chr2R_5675001 RAL-395 792 chr2R 5724966 5725020 chr2R 5725222 5725275 12 255 5.0 8.5 6.8 1.5 309 chr2R 5724966 intron ap - chr2R 5725120 intron ap - chr2R 5725275 intron ap - chr2R_12_5725001 chr2R_5725001 RAL-395 793 chr2R 5750425 5750439 chr2R 5750542 5750557 6 118 15.0 7.5 11.2 0.5 132 chr2R 5750425 intergenic not near genes chr2R 5750491 intergenic not near genes chr2R 5750557 intergenic not near genes chr2R_6_5750001 chr2R_5750001 RAL-395 794 chr2R 5772503 5772545 chr2R 5772623 5772665 18 120 4.0 4.0 4.0 3.6 162 chr2R 5772503 3` UTR Gp210 + chr2R 5772584 3` UTR Gp210 + chr2R 5772665 3` UTR Gp210 + chr2R_18_5770001 chr2R_5770001 RAL-395 795 chr2R 5772810 5772855 chr2R 5772918 5772963 19 108 10.0 5.0 7.5 2.2 153 chr2R 5772810 3` UTR Gp210 + chr2R 5772886 3` UTR Gp210 + chr2R 5772963 3` UTR Gp210 + chr2R_19_5770001 chr2R_5770001 RAL-395 796 chr2R 5790438 5790494 chr2R 5790549 5790600 14 110 5.0 0.0 2.5 4.0 162 chr2R 5790438 intergenic not near genes chr2R 5790519 intergenic not near genes chr2R 5790600 intergenic not near genes chr2R_14_5790001 chr2R_5790001 RAL-395 797 chr2R 5812135 5812174 chr2R 5812238 5812277 17 103 17.0 16.0 16.5 1.0 142 chr2R 5812135 intron dpr12 + chr2R 5812206 intron dpr12 + chr2R 5812277 intron dpr12 + chr2R_17_5810001 chr2R_5810001 RAL-395 798 chr2R 5834069 5834125 chr2R 5834262 5834318 21 193 6.0 9.5 7.8 2.4 249 chr2R 5834069 intron dpr12 + chr2R 5834194 intron dpr12 + chr2R 5834318 intron dpr12 + chr2R_21_5830001 chr2R_5830001 RAL-395 799 chr2R 5861262 5861321 chr2R 5861408 5861468 31 147 6.5 7.5 7.0 3.9 206 chr2R 5861262 intergenic dpr12 + chr2R 5861365 intergenic not near genes chr2R 5861468 intergenic not near genes chr2R_31_5860001 chr2R_5860001 RAL-395 800 chr2R 5869251 5869303 chr2R 5874353 5874405 flea 38 5102 8.5 14.0 11.2 3.1 5154 chr2R 5869251 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874405 intergenic not near genes chr2R_38_5870001 chr2R_5870001 RAL-395 801 chr2R 5878897 5878956 chr2R 5879003 5879062 33 105 6.5 5.0 5.8 4.9 165 chr2R 5878897 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879062 intergenic CG44438 - chr2R_33_5875001 chr2R_5875001 RAL-395 802 chr2R 5879326 5879376 chr2R 5879543 5879593 28 216 10.0 8.5 9.2 2.7 267 chr2R 5879326 3` UTR CG44438 - chr2R 5879460 3` UTR CG44438 - chr2R 5879593 exon CG44438 - chr2R_28_5875001 chr2R_5875001 RAL-395 803 chr2R 5902142 5902187 chr2R 5909726 5909771 17.6 6 7585 4.0 5.5 4.8 1.0 7629 chr2R 5902142 intron CG43366 + chr2R 5905956 intron CG43366 + chr2R 5909771 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-395 804 chr2R 5939648 5939668 chr2R 5940871 5940886 INE-1 16 1222 9.0 19.0 14.0 1.1 1238 chr2R 5939648 intergenic not near genes chr2R 5940267 intergenic not near genes chr2R 5940886 intergenic not near genes chr2R_16_5940001 chr2R_5940001 RAL-395 805 chr2R 5947911 5947941 chr2R 5948088 5948118 16 177 10.0 0.0 5.0 2.7 207 chr2R 5947911 intergenic not near genes chr2R 5948014 intergenic not near genes chr2R 5948118 intergenic not near genes chr2R_16_5945001 chr2R_5945001 RAL-395 806 chr2R 5964925 5964953 chr2R 5965029 5965057 8 104 7.0 8.0 7.5 0.9 132 chr2R 5964925 intron CG7881 - chr2R 5964991 intron CG7881 - chr2R 5965057 intron CG7881 - chr2R_8_5960001 chr2R_5960001 RAL-395 807 chr2R 6088348 6088387 chr2R 6088467 6088506 18 119 12.5 11.0 11.8 1.4 158 chr2R 6088348 intergenic not near genes chr2R 6088427 intergenic not near genes chr2R 6088506 intergenic not near genes chr2R_18_6085001 chr2R_6085001 RAL-395 808 chr2R 6096697 6096704 chr2R 6101921 6101928 BS 5 5224 20.5 15.5 18.0 0.3 5231 chr2R 6096697 intron EcR - chr2R 6099312 intron EcR - chr2R 6101928 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-395 809 chr2R 6096706 6096745 chr2R 6101919 6101969 BS 28 5223 8.5 14.5 11.5 2.2 5263 chr2R 6096706 intron EcR - chr2R 6099338 intron EcR - chr2R 6101969 intron EcR - chr2R_28_6095001 chr2R_6095001 RAL-395 810 chr2R 6129298 6129357 chr2R 6129402 6129461 36 104 5.5 8.0 6.8 4.6 163 chr2R 6129298 intron EcR - chr2R 6129380 intron EcR - chr2R 6129461 intron EcR - chr2R_36_6125001 chr2R_6125001 RAL-395 811 chr2R 6152963 6152995 chr2R 6153115 6153151 14 156 9.5 4.0 6.8 1.8 188 chr2R 6152963 intron EcR - chr2R 6153057 intron EcR - chr2R 6153151 intron EcR - chr2R_14_6150001 chr2R_6150001 RAL-395 812 chr2R 6178096 6178144 chr2R 6178247 6178296 22 151 7.5 9.5 8.5 2.3 200 chr2R 6178096 intergenic not near genes chr2R 6178196 intergenic not near genes chr2R 6178296 intergenic not near genes chr2R_22_6175001 chr2R_6175001 RAL-395 813 chr2R 6178661 6178712 chr2R 6178766 6178825 28 112 8.0 4.5 6.2 3.9 164 chr2R 6178661 intergenic not near genes chr2R 6178743 intergenic not near genes chr2R 6178825 intergenic not near genes chr2R_28_6175001 chr2R_6175001 RAL-395 814 chr2R 3998869 3998876 chr2R 6486818 6486836 7 2487951 32.5 29.0 30.8 0.2 2487967 chr2R 3998869 intergenic not near genes chr2R 5242852 intron Nipped-A - chr2R 6486836 intergenic not near genes chr2R_7_5240001 chr2R_5240001 RAL-395 815 chr2R 6494506 6494549 chr2R 6499294 6499337 F-element 17 4788 7.5 1.5 4.5 3.1 4831 chr2R 6494506 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499337 intergenic not near genes chr2R_17_6495001 chr2R_6495001 RAL-395 816 chr2R 6546692 6546749 chr2R 6546819 6546876 24 127 5.5 8.0 6.8 3.1 184 chr2R 6546692 intron jing + chr2R 6546784 intron jing + chr2R 6546876 intron jing + chr2R_24_6545001 chr2R_6545001 RAL-395 817 chr2R 6579777 6579799 chr2R 6584890 6584912 flea 10 5113 9.5 5.5 7.5 1.2 5135 chr2R 6579777 intron jing + chr2R 6582344 intron jing + chr2R 6584912 intron jing + chr2R_10_6580001 chr2R_6580001 RAL-395 818 chr2R 6664157 6664210 chr2R 6665969 6666022 S-element 22 1811 9.0 3.0 6.0 3.1 1865 chr2R 6664157 intron,3` UTR Adf1 +,CR45128 - chr2R 6665090 intron Adf1 + chr2R 6666022 intron Adf1 + chr2R_22_6665001 chr2R_6665001 RAL-395 819 chr2R 6711712 6711770 chr2R 6711827 6711882 20 115 5.5 6.5 6.0 2.9 170 chr2R 6711712 intron,intron CG3409 -,CG45092 - chr2R 6711797 intron,intron CG3409 -,CG45092 - chr2R 6711882 intron,intron CG3409 -,CG45092 - chr2R_20_6710001 chr2R_6710001 RAL-395 820 chr2R 6741471 6741525 chr2R 6741575 6741629 33 104 7.5 7.5 7.5 3.9 158 chr2R 6741471 intergenic phtf + chr2R 6741550 intergenic phtf + chr2R 6741629 intergenic phtf + chr2R_33_6740001 chr2R_6740001 RAL-395 821 chr2R 6893821 6893858 chr2R 6893926 6893963 24 103 10.0 15.0 12.5 1.8 142 chr2R 6893821 intron CG30158 + chr2R 6893892 intron CG30158 + chr2R 6893963 intron CG30158 + chr2R_24_6890001 chr2R_6890001 RAL-395 822 chr2R 6932767 6932812 chr2R 6932870 6932915 27 103 13.0 10.0 11.5 2.2 148 chr2R 6932767 intron mim - chr2R 6932841 intron mim - chr2R 6932915 intron mim - chr2R_27_6930001 chr2R_6930001 RAL-395 823 chr2R 6952171 6952180 chr2R 6959787 6959796 opus 5 7616 6.5 9.0 7.8 0.6 7625 chr2R 6952171 intron,intron mim -,CheB42c - chr2R 6955984 intron,intron mim -,CheB42c - chr2R 6959796 intron,intron mim -,CheB42c - chr2R_5_6955001 chr2R_6955001 RAL-395 824 chr2R 6964256 6964314 chr2R 6964359 6964417 15 103 4.0 3.5 3.8 3.1 161 chr2R 6964256 intron,intron mim -,CheB42c - chr2R 6964336 intron,intron mim -,CheB42c - chr2R 6964417 intron,intron mim -,CheB42c - chr2R_15_6960001 chr2R_6960001 RAL-395 825 chr2R 6978613 6978670 chr2R 6978822 6978876 23 208 5.0 4.5 4.8 4.0 263 chr2R 6978613 intron vimar - chr2R 6978744 intron vimar - chr2R 6978876 intron vimar - chr2R_23_6975001 chr2R_6975001 RAL-395 826 chr2R 7091188 7091237 chr2R 7091296 7091344 15 108 7.0 11.0 9.0 1.5 156 chr2R 7091188 intron esn + chr2R 7091266 intron esn + chr2R 7091344 intron esn + chr2R_15_7090001 chr2R_7090001 RAL-395 827 chr2R 7139945 7139951 chr2R 7141441 7141468 hopper2 5 1512 0.5 16.5 8.5 0.5 1523 chr2R 7139945 intergenic not near genes chr2R 7140706 intergenic not near genes chr2R 7141468 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-395 828 chr2R 7171254 7171284 chr2R 7171365 7171396 12 112 6.0 15.0 10.5 1.0 142 chr2R 7171254 intron pk + chr2R 7171325 intron pk + chr2R 7171396 intron pk + chr2R_12_7170001 chr2R_7170001 RAL-395 829 chr2R 7196557 7196588 chr2R 7201349 7201389 F-element 12 4799 9.5 7.0 8.2 1.3 4832 chr2R 7196557 intron pk + chr2R 7198973 intron pk + chr2R 7201389 intron pk + chr2R_12_7195001 chr2R_7195001 RAL-395 830 chr2R 7209863 7209874 chr2R 7217650 7217661 roo 8 7787 1.0 18.0 9.5 0.8 7798 chr2R 7209863 intron pk + chr2R 7213762 intron pk + chr2R 7217661 intron pk + chr2R_8_7210001 chr2R_7210001 RAL-395 831 chr2R 7235799 7235847 chr2R 7240917 7240965 jockey 25 5117 11.0 6.5 8.8 2.6 5166 chr2R 7235799 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240965 intergenic not near genes chr2R_25_7235001 chr2R_7235001 RAL-395 832 chr2R 7243368 7243398 chr2R 7247763 7247793 5 4395 31.0 52.0 41.5 0.1 4425 chr2R 7243368 3` UTR Ady43A - chr2R 7245580 5` UTR Ady43A - chr2R 7247793 intergenic not near genes chr2R_5_7245001 chr2R_7245001 RAL-395 833 chr2R 7417879 7418168 chr2R 7417991 7418273 47 107 6.0 7.5 6.8 6.0 394 chr2R 7417879 intergenic not near genes chr2R 7418076 intergenic not near genes chr2R 7418273 intergenic not near genes chr2R_47_7415001 chr2R_7415001 RAL-395 834 chr2R 7434875 7434910 chr2R 7439202 7439236 Juan 11 4327 8.0 6.5 7.2 1.3 4361 chr2R 7434875 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439236 intergenic not near genes chr2R_11_7435001 chr2R_7435001 RAL-395 835 chr2R 7450168 7450224 chr2R 7450284 7450340 25 115 2.5 5.5 4.0 5.0 172 chr2R 7450168 intron fa2h - chr2R 7450254 intron fa2h - chr2R 7450340 intron fa2h - chr2R_25_7450001 chr2R_7450001 RAL-395 836 chr2R 7608389 7608446 chr2R 7613618 7613674 I-element 16 5229 3.0 0.0 1.5 6.4 5285 chr2R 7608389 intron CG1358 - chr2R 7611032 intron CG1358 - chr2R 7613674 intron CG1358 - chr2R_16_7610001 chr2R_7610001 RAL-395 837 chr2R 7636814 7636869 chr2R 7637503 7637558 38 687 10.5 7.5 9.0 3.8 744 chr2R 7636814 intron CG43340 + chr2R 7637186 intron CG43340 + chr2R 7637558 intron CG43340 + chr2R_38_7635001 chr2R_7635001 RAL-395 838 chr2R 7692008 7692038 chr2R 7692115 7692145 11 107 0.0 11.0 5.5 1.7 137 chr2R 7692008 intron CG1399 - chr2R 7692076 intron CG1399 - chr2R 7692145 intron CG1399 - chr2R_11_7690001 chr2R_7690001 RAL-395 839 chr2R 7694565 7694610 chr2R 7694676 7694720 23 109 10.5 8.5 9.5 2.2 155 chr2R 7694565 intron CG1399 - chr2R 7694642 intron CG1399 - chr2R 7694720 intron CG1399 - chr2R_23_7690001 chr2R_7690001 RAL-395 840 chr2R 7714058 7714117 chr2R 7714160 7714226 36 102 8.5 6.0 7.2 4.4 168 chr2R 7714058 exon CG1942 + chr2R 7714142 3` UTR CG1942 + chr2R 7714226 intergenic CG1942 + chr2R_36_7710001 chr2R_7710001 RAL-395 841 chr2R 7730064 7730117 chr2R 7730170 7730223 36 105 8.5 6.0 7.2 4.4 159 chr2R 7730064 intron CG18812 - chr2R 7730144 intron CG18812 - chr2R 7730223 intron CG18812 - chr2R_36_7730001 chr2R_7730001 RAL-395 842 chr2R 7787060 7787116 chr2R 7787168 7787224 25 108 5.0 5.5 5.2 4.0 164 chr2R 7787060 intron CanB2 + chr2R 7787142 intron CanB2 + chr2R 7787224 intron CanB2 + chr2R_25_7785001 chr2R_7785001 RAL-395 843 chr2R 7815648 7815693 chr2R 7822143 7822188 Burdock 23 6495 7.5 7.5 7.5 2.7 6540 chr2R 7815648 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822188 3` UTR cathD - chr2R_23_7815001 chr2R_7815001 RAL-395 844 chr2R 7851237 7851294 chr2R 7851347 7851373 28 108 9.5 8.0 8.8 2.9 136 chr2R 7851237 intron Dgk - chr2R 7851305 intron Dgk - chr2R 7851373 intron Dgk - chr2R_28_7850001 chr2R_7850001 RAL-395 845 chr2R 7869167 7869215 chr2R 7873978 7874026 Doc 28 4812 10.5 11.0 10.8 2.4 4859 chr2R 7869167 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874026 intron Dgk - chr2R_28_7870001 chr2R_7870001 RAL-395 846 chr2R 7897135 7897153 chr2R 7897250 7897268 12 115 0.0 21.0 10.5 1.0 133 chr2R 7897135 intron CG30377 + chr2R 7897202 intron CG30377 + chr2R 7897268 intron CG30377 + chr2R_12_7895001 chr2R_7895001 RAL-395 847 chr2R 8006824 8006876 chr2R 8007009 8007061 28 184 7.0 8.0 7.5 3.3 237 chr2R 8006824 intergenic Odc1 +,Odc2 + chr2R 8006942 intergenic Odc1 +,Odc2 + chr2R 8007061 intergenic Odc2 +,Odc1 + chr2R_28_8005001 chr2R_8005001 RAL-395 848 chr2R 8008839 8008850 chr2R 8008964 8008975 8 125 17.0 5.0 11.0 0.7 136 chr2R 8008839 intron Odc2 + chr2R 8008907 exon Odc2 + chr2R 8008975 exon Odc2 + chr2R_8_8005001 chr2R_8005001 RAL-395 849 chr2R 8008852 8008891 chr2R 8008963 8009016 23 124 6.5 5.0 5.8 3.4 164 chr2R 8008852 intron Odc2 + chr2R 8008934 exon Odc2 + chr2R 8009016 3` UTR Odc2 + chr2R_23_8005001 chr2R_8005001 RAL-395 850 chr2R 8014102 8014152 chr2R 8014204 8014253 23 101 6.0 7.0 6.5 3.1 151 chr2R 8014102 intergenic CG14762 - chr2R 8014178 intergenic CG14762 - chr2R 8014253 intergenic CG14762 - chr2R_23_8010001 chr2R_8010001 RAL-395 851 chr2R 8015632 8015677 chr2R 8017681 8017726 26 2049 9.0 9.5 9.2 2.5 2094 chr2R 8015632 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017726 intergenic not near genes chr2R_26_8015001 chr2R_8015001 RAL-395 852 chr2R 8049575 8049590 chr2R 8049733 8049748 6 156 12.0 5.5 8.8 0.6 173 chr2R 8049575 intergenic not near genes chr2R 8049662 intergenic not near genes chr2R 8049748 intergenic not near genes chr2R_6_8045001 chr2R_8045001 RAL-395 853 chr2R 8067041 8067090 chr2R 8067151 8067200 24 110 4.5 7.5 6.0 3.4 159 chr2R 8067041 intron CG17977 - chr2R 8067120 intron CG17977 - chr2R 8067200 exon CG17977 - chr2R_24_8065001 chr2R_8065001 RAL-395 854 chr2R 8076655 8076710 chr2R 8076760 8076816 35 106 8.0 4.0 6.0 5.0 161 chr2R 8076655 intron lig + chr2R 8076736 intron lig + chr2R 8076816 intron lig + chr2R_35_8075001 chr2R_8075001 RAL-395 855 chr2R 8089238 8089284 chr2R 8089350 8089396 24 110 5.0 7.5 6.2 3.3 158 chr2R 8089238 3` UTR sut2 + chr2R 8089317 intergenic sut2 +,sut3 + chr2R 8089396 intergenic sut3 +,sut2 + chr2R_24_8085001 chr2R_8085001 RAL-395 856 chr2R 8105910 8105960 chr2R 8106024 8106077 23 116 9.0 8.5 8.8 2.3 167 chr2R 8105910 5` UTR Cul4 - chr2R 8105994 intron Cul4 - chr2R 8106077 5` UTR Cul4 - chr2R_23_8105001 chr2R_8105001 RAL-395 857 chr2R 8160908 8160944 chr2R 8161024 8161060 1360 20 116 10.0 16.5 13.2 1.4 152 chr2R 8160908 exon CG8708 - chr2R 8160984 intron CG8708 - chr2R 8161060 intron CG8708 - chr2R_20_8160001 chr2R_8160001 RAL-395 858 chr2R 8236014 8236050 chr2R 8236121 8236155 15 106 8.5 3.5 6.0 2.1 141 chr2R 8236014 intergenic not near genes chr2R 8236084 intergenic not near genes chr2R 8236155 intergenic not near genes chr2R_15_8235001 chr2R_8235001 RAL-395 859 chr2R 8249541 8249598 chr2R 8249649 8249706 21 108 8.5 5.0 6.8 2.7 165 chr2R 8249541 5` UTR CG44439 - chr2R 8249624 intergenic CG44439 - chr2R 8249706 intergenic CG44439 - chr2R_21_8245001 chr2R_8245001 RAL-395 860 chr2R 8297403 8297456 chr2R 8297508 8297561 34 104 8.0 7.5 7.8 3.9 158 chr2R 8297403 intergenic not near genes chr2R 8297482 intergenic not near genes chr2R 8297561 intergenic not near genes chr2R_34_8295001 chr2R_8295001 RAL-395 861 chr2R 8330836 8330889 chr2R 8331348 8331401 roo 36 511 7.5 7.5 7.5 4.2 565 chr2R 8330836 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331401 intron pdm3 + chr2R_36_8330001 chr2R_8330001 RAL-395 862 chr2R 8398192 8398240 chr2R 8402999 8403044 Doc 27 4806 6.0 10.5 8.2 2.9 4852 chr2R 8398192 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403044 intron CG2121 - chr2R_27_8400001 chr2R_8400001 RAL-395 863 chr2R 8416291 8416307 chr2R 8417141 8417157 I-element 12 850 13.5 3.0 8.2 1.3 866 chr2R 8416291 intergenic not near genes chr2R 8416724 intergenic CG43296 - chr2R 8417157 intergenic CG43296 - chr2R_12_8415001 chr2R_8415001 RAL-395 864 chr2R 8518772 8518793 chr2R 12066267 12066287 7 3547495 31.0 0.0 15.5 0.4 3547515 chr2R 8518772 intron mtt - chr2R 10292530 intron CAP + chr2R 12066287 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-395 865 chr2R 8536171 8536231 chr2R 8536429 8536489 36 257 5.5 7.0 6.2 5.0 318 chr2R 8536171 intergenic not near genes chr2R 8536330 intergenic not near genes chr2R 8536489 intergenic not near genes chr2R_36_8535001 chr2R_8535001 RAL-395 866 chr2R 8561299 8561350 chr2R 8561652 8561698 33 352 9.0 11.0 10.0 3.0 399 chr2R 8561299 intergenic not near genes chr2R 8561498 intergenic not near genes chr2R 8561698 intergenic not near genes chr2R_33_8560001 chr2R_8560001 RAL-395 867 chr2R 8612558 8612609 chr2R 8612661 8612712 24 103 8.0 5.0 6.5 3.2 154 chr2R 8612558 intron CG8642 - chr2R 8612635 intron CG8642 - chr2R 8612712 intron CG8642 - chr2R_24_8610001 chr2R_8610001 RAL-395 868 chr2R 8635928 8635934 chr2R 8636026 8636038 7 103 0.0 14.5 7.2 0.9 110 chr2R 8635928 intergenic not near genes chr2R 8635983 intergenic not near genes chr2R 8636038 intergenic not near genes chr2R_7_8635001 chr2R_8635001 RAL-395 869 chr2R 8658218 8658258 chr2R 8658319 8658350 17 100 0.0 6.0 3.0 4.2 132 chr2R 8658218 intron ptc + chr2R 8658284 intron ptc + chr2R 8658350 intron ptc + chr2R_17_8655001 chr2R_8655001 RAL-395 870 chr2R 8691097 8691150 chr2R 8691592 8691645 24 495 5.0 6.5 5.8 3.5 548 chr2R 8691097 intergenic Jon44E + chr2R 8691371 intergenic Jon44E + chr2R 8691645 exon Jon44E + chr2R_24_8690001 chr2R_8690001 RAL-395 871 chr2R 8714705 8714717 chr2R 8714818 8714830 6 113 0.0 13.5 6.8 0.8 125 chr2R 8714705 3` UTR PGRP-SC1b + chr2R 8714768 3` UTR PGRP-SC1b + chr2R 8714830 3` UTR PGRP-SC1b + chr2R_6_8710001 chr2R_8710001 RAL-395 872 chr2R 8722740 8722794 chr2R 8723007 8723049 pogo 33 266 11.0 11.0 11.0 2.8 309 chr2R 8722740 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723049 intron CG14767 - chr2R_33_8720001 chr2R_8720001 RAL-395 873 chr2R 8759733 8759787 chr2R 8759838 8759892 35 105 4.5 7.5 6.0 5.0 159 chr2R 8759733 intergenic CG8740 + chr2R 8759812 intergenic CG8740 + chr2R 8759892 intergenic CG8740 + chr2R_35_8755001 chr2R_8755001 RAL-395 874 chr2R 8777897 8777946 chr2R 8784127 8784176 diver 10 6230 3.5 9.5 6.5 1.3 6279 chr2R 8777897 intergenic not near genes chr2R 8781036 intergenic not near genes chr2R 8784176 intergenic not near genes chr2R_10_8780001 chr2R_8780001 RAL-395 875 chr2R 8810464 8810469 chr2R 8810573 8810578 6 109 6.5 29.0 17.8 0.3 114 chr2R 8810464 intron sns + chr2R 8810521 intron sns + chr2R 8810578 intron sns + chr2R_6_8810001 chr2R_8810001 RAL-395 876 chr2R 8833400 8833450 chr2R 8833508 8833558 43 107 8.0 8.0 8.0 4.8 158 chr2R 8833400 intron sns + chr2R 8833479 intron sns + chr2R 8833558 intron sns + chr2R_43_8830001 chr2R_8830001 RAL-395 877 chr2R 9047415 9047438 chr2R 9047536 9047559 5 121 0.0 8.5 4.2 1.0 144 chr2R 9047415 intron CG13743 - chr2R 9047487 intron CG13743 - chr2R 9047559 intron CG13743 - chr2R_5_9045001 chr2R_9045001 RAL-395 878 chr2R 9052679 9052736 chr2R 9052784 9052843 21 105 4.5 6.0 5.2 3.4 164 chr2R 9052679 intron CG13743 - chr2R 9052761 intron CG13743 - chr2R 9052843 intron CG13743 - chr2R_21_9050001 chr2R_9050001 RAL-395 879 chr2R 9065889 9065898 chr2R 9065997 9066006 7 108 26.5 8.5 17.5 0.4 117 chr2R 9065889 intron ana + chr2R 9065948 intron ana + chr2R 9066006 intron ana + chr2R_7_9065001 chr2R_9065001 RAL-395 880 chr2R 9065899 9065945 chr2R 9065995 9066053 28 107 10.5 7.5 9.0 2.8 154 chr2R 9065899 intron ana + chr2R 9065976 intron ana + chr2R 9066053 intron ana + chr2R_28_9065001 chr2R_9065001 RAL-395 881 chr2R 9151274 9151332 chr2R 9157770 9157828 Burdock 46 6495 19.5 12.0 15.8 2.7 6554 chr2R 9151274 exon CG30345 + chr2R 9154551 intergenic not near genes chr2R 9157828 intergenic CG8008 - chr2R_46_9150001 chr2R_9150001 RAL-395 882 chr2R 9147918 9147975 chr2R 9160169 9160226 Burdock 28 12251 64.0 67.0 65.5 0.4 12308 chr2R 9147918 intron CG30344 + chr2R 9154072 intergenic not near genes chr2R 9160226 exon CG8008 - chr2R_28_9150001 chr2R_9150001 RAL-395 883 chr2R 9183108 9183141 chr2R 9183216 9183249 21 107 13.0 7.0 10.0 1.9 141 chr2R 9183108 intron ltd - chr2R 9183178 intron ltd - chr2R 9183249 intron ltd - chr2R_21_9180001 chr2R_9180001 RAL-395 884 chr2R 9183143 9183154 chr2R 9183214 9183264 10 104 8.0 6.5 7.2 1.2 121 chr2R 9183143 intron ltd - chr2R 9183204 intron ltd - chr2R 9183264 intron ltd - chr2R_10_9180001 chr2R_9180001 RAL-395 885 chr2R 9212671 9212725 chr2R 9213183 9213198 roo 24 510 11.0 7.5 9.2 2.4 527 chr2R 9212671 intergenic CR45309 + chr2R 9212934 intergenic CR45309 + chr2R 9213198 5` UTR CR45309 + chr2R_24_9210001 chr2R_9210001 RAL-395 886 chr2R 9213215 9213230 chr2R 9213334 9213349 7 119 8.0 20.0 14.0 0.5 134 chr2R 9213215 5` UTR CR45309 + chr2R 9213282 5` UTR CR45309 + chr2R 9213349 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-395 887 chr2R 9230199 9230243 chr2R 9230304 9230349 33 105 11.0 11.0 11.0 2.8 150 chr2R 9230199 intron hig - chr2R 9230274 intron hig - chr2R 9230349 exon hig - chr2R_33_9230001 chr2R_9230001 RAL-395 888 chr2R 9265242 9265298 chr2R 9265452 9265508 29 209 7.0 11.0 9.0 2.9 266 chr2R 9265242 intron Pkn - chr2R 9265375 intron Pkn - chr2R 9265508 exon Pkn - chr2R_29_9265001 chr2R_9265001 RAL-395 889 chr2R 9267953 9268008 chr2R 9268065 9268120 30 111 10.5 2.0 6.2 4.2 167 chr2R 9267953 exon Pkn - chr2R 9268036 intron Pkn - chr2R 9268120 intron Pkn - chr2R_30_9265001 chr2R_9265001 RAL-395 890 chr2R 9368102 9368155 chr2R 9368204 9368229 14 100 4.5 0.0 2.2 4.4 127 chr2R 9368102 intron CG13954 - chr2R 9368166 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_14_9365001 chr2R_9365001 RAL-395 891 chr2R 9379914 9379974 chr2R 9380016 9380076 33 100 10.5 9.0 9.8 3.1 162 chr2R 9379914 intron CG13954 - chr2R 9379995 intron CG13954 - chr2R 9380076 intron CG13954 - chr2R_33_9375001 chr2R_9375001 RAL-395 892 chr2R 9466647 9466687 chr2R 9466754 9466793 27 107 5.0 3.0 4.0 5.4 146 chr2R 9466647 intron Camta + chr2R 9466720 intron Camta + chr2R 9466793 intron Camta + chr2R_27_9465001 chr2R_9465001 RAL-395 893 chr2R 9480055 9480098 chr2R 9490612 9490655 roo 17 10556 9.5 3.5 6.5 2.3 10600 chr2R 9480055 intergenic not near genes chr2R 9485355 intergenic not near genes chr2R 9490655 intergenic not near genes chr2R_17_9485001 chr2R_9485001 RAL-395 894 chr2R 9669114 9669168 chr2R 9669241 9669295 32 126 12.5 9.5 11.0 2.7 181 chr2R 9669114 intron Mmp2 - chr2R 9669204 intron Mmp2 - chr2R 9669295 intron Mmp2 - chr2R_32_9665001 chr2R_9665001 RAL-395 895 chr2R 9672026 9672084 chr2R 9672158 9672214 19 131 8.0 9.5 8.8 1.9 188 chr2R 9672026 intron Mmp2 - chr2R 9672120 intron Mmp2 - chr2R 9672214 intron Mmp2 - chr2R_19_9670001 chr2R_9670001 RAL-395 896 chr2R 9726603 9726631 chr2R 9734165 9734208 17.6 8 7573 5.5 6.0 5.8 1.2 7605 chr2R 9726603 intron sqa - chr2R 9730406 intron sqa - chr2R 9734208 intron sqa - chr2R_8_9730001 chr2R_9730001 RAL-395 897 chr2R 9746557 9746609 chr2R 9747864 9747916 34 1307 49.5 65.5 57.5 0.6 1359 chr2R 9746557 5` UTR sqa - chr2R 9747236 5` UTR sqa - chr2R 9747916 5` UTR sqa - chr2R_34_9745001 chr2R_9745001 RAL-395 898 chr2R 9770036 9770091 chr2R 9770156 9770201 27 119 12.0 6.0 9.0 2.7 165 chr2R 9770036 intron CG1688 - chr2R 9770118 intron CG1688 - chr2R 9770201 intron CG1688 - chr2R_27_9770001 chr2R_9770001 RAL-395 899 chr2R 9830250 9830299 chr2R 9830359 9830406 21 108 6.0 7.5 6.8 2.7 156 chr2R 9830250 intron hebe - chr2R 9830328 intron hebe - chr2R 9830406 intron hebe - chr2R_21_9830001 chr2R_9830001 RAL-395 900 chr2R 9871012 9871069 chr2R 9871524 9871581 roo 31 511 8.0 6.0 7.0 3.9 569 chr2R 9871012 intron cbx - chr2R 9871296 intron cbx - chr2R 9871581 intron,5` UTR cbx -,CG18446 + chr2R_31_9870001 chr2R_9870001 RAL-395 901 chr2R 9923828 9923888 chr2R 9923935 9923996 48 106 9.5 10.5 10.0 4.4 168 chr2R 9923828 intron Mef2 - chr2R 9923912 intron Mef2 - chr2R 9923996 intron Mef2 - chr2R_48_9920001 chr2R_9920001 RAL-395 902 chr2R 9945414 9945458 chr2R 9945636 9945680 BS 16 222 14.5 8.0 11.2 1.3 266 chr2R 9945414 intron Mef2 - chr2R 9945547 intron Mef2 - chr2R 9945680 intron Mef2 - chr2R_16_9945001 chr2R_9945001 RAL-395 903 chr2R 9945460 9945466 chr2R 9945626 9945688 BS 6 212 12.0 5.5 8.8 0.6 228 chr2R 9945460 intron Mef2 - chr2R 9945574 intron Mef2 - chr2R 9945688 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-395 904 chr2R 9975899 9975948 chr2R 9976040 9976086 13 139 10.0 0.0 5.0 2.2 187 chr2R 9975899 intergenic not near genes chr2R 9975992 intergenic not near genes chr2R 9976086 intergenic not near genes chr2R_13_9975001 chr2R_9975001 RAL-395 905 chr2R 9998077 9998091 chr2R 9998197 9998211 7 120 6.0 16.0 11.0 0.6 134 chr2R 9998077 intron Pka-R2 - chr2R 9998144 intron Pka-R2 - chr2R 9998211 intron Pka-R2 - chr2R_7_9995001 chr2R_9995001 RAL-395 906 chr2R 10005826 10005880 chr2R 10007017 10007017 1360 36 1189 11.5 12.0 11.8 2.8 1191 chr2R 10005826 intron Pka-R2 - chr2R 10006422 intron Pka-R2 - chr2R 10007017 intron Pka-R2 - chr2R_36_10005001 chr2R_10005001 RAL-395 907 chr2R 10055706 10055761 chr2R 10055808 10055863 32 102 7.5 10.0 8.8 3.3 157 chr2R 10055706 intron magu + chr2R 10055784 intron magu + chr2R 10055863 intron magu + chr2R_32_10055001 chr2R_10055001 RAL-395 908 chr2R 10168330 10168365 chr2R 10168434 10168468 6 103 6.0 11.0 8.5 0.6 138 chr2R 10168330 intron KCNQ - chr2R 10168399 intron KCNQ - chr2R 10168468 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-395 909 chr2R 10171086 10171139 chr2R 10171196 10171249 27 110 4.0 9.0 6.5 3.6 163 chr2R 10171086 intron KCNQ - chr2R 10171168 intron KCNQ - chr2R 10171249 intron KCNQ - chr2R_27_10170001 chr2R_10170001 RAL-395 910 chr2R 10176854 10176908 chr2R 10186050 10186104 roo 28 9195 7.0 4.0 5.5 4.3 9250 chr2R 10176854 intron KCNQ - chr2R 10181479 intron KCNQ - chr2R 10186104 intron KCNQ - chr2R_28_10180001 chr2R_10180001 RAL-395 911 chr2R 10189187 10189235 chr2R 10189291 10189339 24 104 9.5 7.0 8.2 2.6 152 chr2R 10189187 intron KCNQ - chr2R 10189263 intron KCNQ - chr2R 10189339 intron KCNQ - chr2R_24_10185001 chr2R_10185001 RAL-395 912 chr2R 10193203 10193233 chr2R 10193313 10193343 19 109 4.0 9.5 6.8 2.4 140 chr2R 10193203 intergenic not near genes chr2R 10193273 intergenic not near genes chr2R 10193343 intergenic not near genes chr2R_19_10190001 chr2R_10190001 RAL-395 913 chr2R 10266476 10266530 chr2R 10266592 10266635 34 112 10.5 10.5 10.5 3.0 159 chr2R 10266476 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266635 intron CG12910 + chr2R_34_10265001 chr2R_10265001 RAL-395 914 chr2R 10313297 10313342 chr2R 10313411 10313456 29 113 2.0 8.0 5.0 4.8 159 chr2R 10313297 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313456 intergenic Ndg + chr2R_29_10310001 chr2R_10310001 RAL-395 915 chr2R 10319715 10319741 chr2R 10319833 10319859 9 118 5.5 13.5 9.5 0.9 144 chr2R 10319715 intron Ndg + chr2R 10319787 intron Ndg + chr2R 10319859 intron,3` UTR Ndg +,CG34222 - chr2R_9_10315001 chr2R_10315001 RAL-395 916 chr2R 10322055 10322080 chr2R 10322163 10322188 15 108 6.0 13.0 9.5 1.4 133 chr2R 10322055 3` UTR Ndg + chr2R 10322122 intergenic Ndg + chr2R 10322188 intergenic Ndg + chr2R_15_10320001 chr2R_10320001 RAL-395 917 chr2R 10376127 10376139 chr2R 10376502 10376514 6 374 0.0 8.5 4.2 1.2 387 chr2R 10376127 intron CG42732 - chr2R 10376320 intron CG42732 - chr2R 10376514 intron CG42732 - chr2R_6_10375001 chr2R_10375001 RAL-395 918 chr2R 10387977 10388001 chr2R 10388097 10388123 15 123 0.0 21.0 10.5 1.3 146 chr2R 10387977 intron CG42732 - chr2R 10388050 intron CG42732 - chr2R 10388123 intron CG42732 - chr2R_15_10385001 chr2R_10385001 RAL-395 919 chr2R 10411778 10411837 chr2R 10411886 10411945 20 108 4.5 8.0 6.2 2.8 167 chr2R 10411778 intron CG42732 - chr2R 10411862 intron CG42732 - chr2R 10411945 intron CG42732 - chr2R_20_10410001 chr2R_10410001 RAL-395 920 chr2R 10417950 10417960 chr2R 10418083 10418093 8 132 0.0 15.5 7.8 0.9 143 chr2R 10417950 intergenic not near genes chr2R 10418022 intergenic not near genes chr2R 10418093 intergenic not near genes chr2R_8_10415001 chr2R_10415001 RAL-395 921 chr2R 10428992 10429049 chr2R 10429095 10429152 40 103 3.5 5.5 4.5 7.3 160 chr2R 10428992 intergenic not near genes chr2R 10429072 intergenic not near genes chr2R 10429152 intergenic not near genes chr2R_40_10425001 chr2R_10425001 RAL-395 922 chr2R 10548112 10548126 chr2R 10548215 10548229 5 103 7.0 12.5 9.8 0.5 117 chr2R 10548112 intergenic not near genes chr2R 10548170 intergenic not near genes chr2R 10548229 intergenic not near genes chr2R_5_10545001 chr2R_10545001 RAL-395 923 chr2R 10562956 10563232 chr2R 10563059 10563356 25 104 0.0 0.0 0.0 25.0 400 chr2R 10562956 intron psq + chr2R 10563156 intron psq + chr2R 10563356 intron psq + chr2R_25_10560001 chr2R_10560001 RAL-395 924 chr2R 10563905 10563924 chr2R 10564122 10564140 6 217 0.0 7.0 3.5 1.3 235 chr2R 10563905 intron psq + chr2R 10564022 intron psq + chr2R 10564140 intron psq + chr2R_6_10560001 chr2R_10560001 RAL-395 925 chr2R 10574604 10574637 chr2R 10574712 10574744 10 108 13.0 14.0 13.5 0.7 140 chr2R 10574604 intron psq + chr2R 10574674 intron psq + chr2R 10574744 intron psq + chr2R_10_10570001 chr2R_10570001 RAL-395 926 chr2R 10577436 10577494 chr2R 10577547 10577605 20 110 5.0 7.5 6.2 2.8 169 chr2R 10577436 intron psq + chr2R 10577520 intron psq + chr2R 10577605 intron psq + chr2R_20_10575001 chr2R_10575001 RAL-395 927 chr2R 10585573 10585589 chr2R 10594170 10594198 Tirant 6 8605 6.0 15.5 10.8 0.5 8625 chr2R 10585573 intron psq + chr2R 10589886 intron psq + chr2R 10594198 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-395 928 chr2R 10622329 10622368 chr2R 10637119 10637131 mdg1 8 14786 9.0 4.0 6.5 1.1 14802 chr2R 10622329 intron CG11883 + chr2R 10629730 intron CG11883 + chr2R 10637131 intron CG11883 + chr2R_8_10625001 chr2R_10625001 RAL-395 929 chr2R 10644032 10644085 chr2R 10644136 10644189 19 104 5.5 0.0 2.8 5.0 157 chr2R 10644032 intron Git - chr2R 10644110 intron Git - chr2R 10644189 intron Git - chr2R_19_10640001 chr2R_10640001 RAL-395 930 chr2R 10653782 10653840 chr2R 10654302 10654359 25 518 2.5 6.0 4.2 4.8 577 chr2R 10653782 intergenic not near genes chr2R 10654070 intergenic not near genes chr2R 10654359 intergenic not near genes chr2R_25_10650001 chr2R_10650001 RAL-395 931 chr2R 10658027 10658083 chr2R 10658145 10658201 21 117 10.0 5.5 7.8 2.4 174 chr2R 10658027 intergenic CR44452 - chr2R 10658114 intergenic not near genes chr2R 10658201 intergenic not near genes chr2R_21_10655001 chr2R_10655001 RAL-395 932 chr2R 10658905 10658921 chr2R 10659016 10659032 12 110 16.0 0.5 8.2 1.3 127 chr2R 10658905 intergenic not near genes chr2R 10658968 intergenic not near genes chr2R 10659032 intergenic not near genes chr2R_12_10655001 chr2R_10655001 RAL-395 933 chr2R 10671228 10671250 chr2R 10671332 10671354 12 104 15.5 0.5 8.0 1.3 126 chr2R 10671228 intergenic not near genes chr2R 10671291 intergenic not near genes chr2R 10671354 intergenic not near genes chr2R_12_10670001 chr2R_10670001 RAL-395 934 chr2R 10675355 10675380 chr2R 10675462 10675487 10 107 0.0 3.5 1.8 3.6 132 chr2R 10675355 intron stan + chr2R 10675421 intron stan + chr2R 10675487 intron stan + chr2R_10_10675001 chr2R_10675001 RAL-395 935 chr2R 10757531 10757574 chr2R 10757660 10757703 23 129 7.5 11.0 9.2 2.3 172 chr2R 10757531 5` UTR CG33144 - chr2R 10757617 intron CG33144 - chr2R 10757703 intron CG33144 - chr2R_23_10755001 chr2R_10755001 RAL-395 936 chr2R 10791017 10791067 chr2R 10791125 10791176 21 108 5.0 5.0 5.0 3.5 159 chr2R 10791017 intron CG33144 - chr2R 10791096 intron CG33144 - chr2R 10791176 intron CG33144 - chr2R_21_10790001 chr2R_10790001 RAL-395 937 chr2R 10794888 10794940 chr2R 10794992 10795044 19 104 4.5 7.5 6.0 2.7 156 chr2R 10794888 intron CG33144 - chr2R 10794966 intron CG33144 - chr2R 10795044 intron CG33144 - chr2R_19_10790001 chr2R_10790001 RAL-395 938 chr2R 10796684 10796717 chr2R 10796809 10796842 5 125 10.0 6.0 8.0 0.6 158 chr2R 10796684 intron CG33144 - chr2R 10796763 intron CG33144 - chr2R 10796842 intron CG33144 - chr2R_5_10795001 chr2R_10795001 RAL-395 939 chr2R 10827310 10827362 chr2R 10827424 10827476 30 113 8.0 6.5 7.2 3.7 166 chr2R 10827310 exon CG12325 + chr2R 10827393 3` UTR CG12325 + chr2R 10827476 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_30_10825001 chr2R_10825001 RAL-395 940 chr2R 10871626 10871676 chr2R 10871727 10871786 18 106 7.0 6.0 6.5 2.4 160 chr2R 10871626 intron CG30015 - chr2R 10871706 intron CG30015 - chr2R 10871786 intron CG30015 - chr2R_18_10870001 chr2R_10870001 RAL-395 941 chr2R 10926686 10926736 chr2R 10926809 10926843 28 122 4.0 9.5 6.8 3.6 157 chr2R 10926686 intergenic not near genes chr2R 10926764 intergenic not near genes chr2R 10926843 intergenic not near genes chr2R_28_10925001 chr2R_10925001 RAL-395 942 chr2R 10937794 10937830 chr2R 10937958 10937993 20 164 0.0 13.5 6.8 2.6 199 chr2R 10937794 intergenic not near genes chr2R 10937894 intergenic not near genes chr2R 10937993 intergenic Spn47C - chr2R_20_10935001 chr2R_10935001 RAL-395 943 chr2R 10948022 10948062 chr2R 10955599 10955612 17.6 29 7576 1.0 11.5 6.2 4.0 7590 chr2R 10948022 intergenic not near genes chr2R 10951817 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_29_10950001 chr2R_10950001 RAL-395 944 chr2R 10959067 10959104 chr2R 10959171 10959208 16 105 3.0 9.0 6.0 2.3 141 chr2R 10959067 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959208 intergenic not near genes chr2R_16_10955001 chr2R_10955001 RAL-395 945 chr2R 10976329 10976382 chr2R 10976438 10976491 18 107 4.5 8.5 6.5 2.4 162 chr2R 10976329 intergenic not near genes chr2R 10976410 intergenic not near genes chr2R 10976491 intergenic not near genes chr2R_18_10975001 chr2R_10975001 RAL-395 946 chr2R 10979644 10979685 chr2R 10980139 10980179 297 15 494 7.5 8.0 7.8 1.7 535 chr2R 10979644 intergenic not near genes chr2R 10979912 intergenic not near genes chr2R 10980179 intergenic not near genes chr2R_15_10975001 chr2R_10975001 RAL-395 947 chr2R 10999212 10999267 chr2R 10999514 10999569 39 301 9.5 10.5 10.0 3.5 357 chr2R 10999212 intron luna - chr2R 10999390 intron luna - chr2R 10999569 intron luna - chr2R_39_10995001 chr2R_10995001 RAL-395 948 chr2R 11009792 11009847 chr2R 11018992 11019047 roo 35 9200 8.5 7.5 8.0 3.9 9255 chr2R 11009792 intron luna - chr2R 11014420 intron luna - chr2R 11019047 intron luna - chr2R_35_11010001 chr2R_11010001 RAL-395 949 chr2R 11019859 11019905 chr2R 11024951 11024994 jockey 22 5091 9.5 11.5 10.5 1.9 5135 chr2R 11019859 intron luna - chr2R 11022426 intron luna - chr2R 11024994 intron luna - chr2R_22_11020001 chr2R_11020001 RAL-395 950 chr2R 11058769 11058787 chr2R 11058874 11058892 13 104 13.0 9.0 11.0 1.1 123 chr2R 11058769 intron luna - chr2R 11058830 intron luna - chr2R 11058892 intron luna - chr2R_13_11055001 chr2R_11055001 RAL-395 951 chr2R 11081052 11081080 chr2R 11081155 11081175 26 102 12.5 22.0 17.2 1.4 123 chr2R 11081052 intron luna - chr2R 11081114 intron luna - chr2R 11081175 intron luna - chr2R_26_11080001 chr2R_11080001 RAL-395 952 chr2R 11102843 11102864 chr2R 11102951 11102972 14 108 13.5 2.5 8.0 1.6 129 chr2R 11102843 intron luna - chr2R 11102908 intron luna - chr2R 11102972 intron luna - chr2R_14_11100001 chr2R_11100001 RAL-395 953 chr2R 11102867 11102878 chr2R 11102950 11102969 4 98 9.0 2.5 5.8 0.6 102 chr2R 11102867 intron luna - chr2R 11102918 intron luna - chr2R 11102969 intron luna - chr2R_4_11100001 chr2R_11100001 RAL-395 954 chr2R 11115248 11115526 chr2R 11115355 11115654 18 112 28.0 16.0 22.0 0.8 406 chr2R 11115248 intron luna - chr2R 11115451 intron luna - chr2R 11115654 intron luna - chr2R_18_11115001 chr2R_11115001 RAL-395 955 chr2R 11115538 11115575 chr2R 11115649 11115703 18 126 10.5 10.0 10.2 1.6 165 chr2R 11115538 intron luna - chr2R 11115620 intron luna - chr2R 11115703 intron luna - chr2R_18_11115001 chr2R_11115001 RAL-395 956 chr2R 11118144 11118182 chr2R 11118247 11118285 9 103 0.0 9.0 4.5 1.6 141 chr2R 11118144 3` UTR Cyp12d1-p - chr2R 11118214 3` UTR Cyp12d1-p - chr2R 11118285 3` UTR Cyp12d1-p - chr2R_9_11115001 chr2R_11115001 RAL-395 957 chr2R 11129510 11129556 chr2R 11129616 11129662 12 106 10.0 6.5 8.2 1.3 152 chr2R 11129510 intergenic not near genes chr2R 11129586 intergenic not near genes chr2R 11129662 intergenic not near genes chr2R_12_11125001 chr2R_11125001 RAL-395 958 chr2R 11144274 11144306 chr2R 11144400 11144433 13 127 0.0 0.0 0.0 13.0 159 chr2R 11144274 intron CG13229 - chr2R 11144354 intron CG13229 - chr2R 11144433 intron CG13229 - chr2R_13_11140001 chr2R_11140001 RAL-395 959 chr2R 11150155 11150196 chr2R 11150257 11150289 16 101 9.5 5.5 7.5 1.9 134 chr2R 11150155 intron CG13229 - chr2R 11150222 intron CG13229 - chr2R 11150289 intron CG13229 - chr2R_16_11150001 chr2R_11150001 RAL-395 960 chr2R 11150782 11150814 chr2R 11150884 11150916 9 102 10.5 0.0 5.2 1.5 134 chr2R 11150782 intron CG13229 - chr2R 11150849 intron CG13229 - chr2R 11150916 intron CG13229 - chr2R_9_11150001 chr2R_11150001 RAL-395 961 chr2R 11151581 11151590 chr2R 11151685 11151694 5 104 2.0 12.5 7.2 0.6 113 chr2R 11151581 intron CG13229 - chr2R 11151638 intron CG13229 - chr2R 11151694 intron CG13229 - chr2R_5_11150001 chr2R_11150001 RAL-395 962 chr2R 11161635 11161657 chr2R 11161801 11161823 17 164 10.0 7.5 8.8 1.7 188 chr2R 11161635 intron,intron CG13229 -,shn + chr2R 11161729 intron,intron CG13229 -,shn + chr2R 11161823 intron,intron CG13229 -,shn + chr2R_17_11160001 chr2R_11160001 RAL-395 963 chr2R 11179244 11179279 chr2R 11179356 11179391 21 111 14.5 16.0 15.2 1.3 147 chr2R 11179244 intron shn + chr2R 11179318 intron shn + chr2R 11179391 intron shn + chr2R_21_11175001 chr2R_11175001 RAL-395 964 chr2R 11207808 11207821 chr2R 11208026 11208036 BS 6 218 20.5 10.5 15.5 0.4 228 chr2R 11207808 intron shn + chr2R 11207922 intron shn + chr2R 11208036 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-395 965 chr2R 11207825 11207849 chr2R 11208024 11208043 BS 10 212 11.0 10.0 10.5 0.9 218 chr2R 11207825 intron shn + chr2R 11207934 intron shn + chr2R 11208043 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-395 966 chr2R 11297615 11297631 chr2R 11301965 11301980 flea 12 4350 10.5 0.0 5.2 1.9 4365 chr2R 11297615 intergenic CG42336 - chr2R 11299798 intergenic not near genes chr2R 11301980 5` UTR CG7741 + chr2R_12_11295001 chr2R_11295001 RAL-395 967 chr2R 11368018 11368056 chr2R 11368115 11368158 8 101 3.0 4.0 3.5 1.8 140 chr2R 11368018 intron CG13204 + chr2R 11368088 intron CG13204 + chr2R 11368158 intron CG13204 + chr2R_8_11365001 chr2R_11365001 RAL-395 968 chr2R 11377233 11377293 chr2R 11377338 11377398 8 105 1.5 4.5 3.0 2.0 165 chr2R 11377233 3` UTR Tsp47F - chr2R 11377316 3` UTR Tsp47F - chr2R 11377398 3` UTR Tsp47F - chr2R_8_11375001 chr2R_11375001 RAL-395 969 chr2R 11415492 11415550 chr2R 11418667 11418721 opus 32 3174 6.5 10.0 8.2 3.5 3229 chr2R 11415492 intron Drip - chr2R 11417106 intron Drip - chr2R 11418721 intron Drip - chr2R_32_11415001 chr2R_11415001 RAL-395 970 chr2R 11419837 11419894 chr2R 11419992 11420033 24 154 5.5 9.0 7.2 2.9 196 chr2R 11419837 intron Drip - chr2R 11419935 intron Drip - chr2R 11420033 intron Drip - chr2R_24_11415001 chr2R_11415001 RAL-395 971 chr2R 11436607 11436621 chr2R 11436734 11436753 9 131 0.0 10.0 5.0 1.5 146 chr2R 11436607 intron CG7777 + chr2R 11436680 intron CG7777 + chr2R 11436753 intron CG7777 + chr2R_9_11435001 chr2R_11435001 RAL-395 972 chr2R 11472626 11472680 chr2R 11473849 11473903 pogo 27 1223 7.0 8.0 7.5 3.2 1277 chr2R 11472626 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473903 intergenic not near genes chr2R_27_11470001 chr2R_11470001 RAL-395 973 chr2R 11486139 11486184 chr2R 11486468 11486513 22 329 10.0 14.5 12.2 1.7 374 chr2R 11486139 intron inv + chr2R 11486326 intron inv + chr2R 11486513 intron inv + chr2R_22_11485001 chr2R_11485001 RAL-395 974 chr2R 11555369 11555420 chr2R 11555730 11555781 13 360 7.5 4.0 5.8 1.9 412 chr2R 11555369 intergenic not near genes chr2R 11555575 intergenic not near genes chr2R 11555781 intergenic not near genes chr2R_13_11555001 chr2R_11555001 RAL-395 975 chr2R 11625287 11625292 chr2R 11625391 11625396 5 104 13.0 0.0 6.5 0.7 109 chr2R 11625287 5` UTR CG9005 - chr2R 11625342 intron CG9005 - chr2R 11625396 intron CG9005 - chr2R_5_11625001 chr2R_11625001 RAL-395 976 chr2R 11632521 11632577 chr2R 11632624 11632680 31 101 8.0 9.5 8.8 3.2 159 chr2R 11632521 intron CG9005 - chr2R 11632600 intron CG9005 - chr2R 11632680 intron CG9005 - chr2R_31_11630001 chr2R_11630001 RAL-395 977 chr2R 11636383 11636442 chr2R 11636487 11636546 38 104 10.5 9.0 9.8 3.5 163 chr2R 11636383 intron CG9005 - chr2R 11636464 intron CG9005 - chr2R 11636546 intron CG9005 - chr2R_38_11635001 chr2R_11635001 RAL-395 978 chr2R 11660344 11660395 chr2R 11660487 11660538 13 143 0.0 6.0 3.0 3.2 194 chr2R 11660344 intron Roc2 - chr2R 11660441 intron Roc2 - chr2R 11660538 intron Roc2 - chr2R_13_11660001 chr2R_11660001 RAL-395 979 chr2R 11666878 11666935 chr2R 11667381 11667438 27 503 8.5 8.0 8.2 2.9 560 chr2R 11666878 intron,intron Roc2 -,Tret1-1 + chr2R 11667158 intron,intron Roc2 -,Tret1-1 + chr2R 11667438 intron,intron Roc2 -,Tret1-1 + chr2R_27_11665001 chr2R_11665001 RAL-395 980 chr2R 11673823 11673832 chr2R 11677380 11677389 6 3557 13.0 57.0 35.0 0.2 3566 chr2R 11673823 intron,exon Roc2 -,Tret1-1 + chr2R 11675606 intron Roc2 - chr2R 11677389 intron,exon Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-395 981 chr2R 11724132 11724184 chr2R 11724241 11724293 15 109 4.0 4.0 4.0 3.0 161 chr2R 11724132 intron pyr + chr2R 11724212 intron pyr + chr2R 11724293 intron pyr + chr2R_15_11720001 chr2R_11720001 RAL-395 982 chr2R 11822980 11823005 chr2R 11823083 11823108 14 103 0.0 12.5 6.2 1.9 128 chr2R 11822980 intergenic not near genes chr2R 11823044 intergenic not near genes chr2R 11823108 intergenic not near genes chr2R_14_11820001 chr2R_11820001 RAL-395 983 chr2R 12096812 12096854 chr2R 12097290 12097332 18 478 5.0 5.5 5.2 2.9 520 chr2R 12096812 intron jeb - chr2R 12097072 intron jeb - chr2R 12097332 intron jeb - chr2R_18_12095001 chr2R_12095001 RAL-395 984 chr2R 12124802 12124860 chr2R 12124912 12124970 32 108 9.5 7.5 8.5 3.4 168 chr2R 12124802 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124970 intergenic not near genes chr2R_32_12120001 chr2R_12120001 RAL-395 985 chr2R 12185977 12186037 chr2R 12186098 12186098 46 119 10.0 12.5 11.2 3.8 121 chr2R 12185977 intron Cyp6g1 + chr2R 12186038 intron Cyp6g1 + chr2R 12186098 intron Cyp6g1 + chr2R_46_12185001 chr2R_12185001 RAL-395 986 chr2R 12185223 12185245 chr2R 12188122 12188144 18 2899 47.0 187.5 117.2 0.2 2921 chr2R 12185223 3` UTR,exon CG13175 +,CG33964 + chr2R 12186684 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_18_12185001 chr2R_12185001 RAL-395 987 chr2R 12189377 12189409 chr2R 12189596 12189623 13 218 168.0 182.5 175.2 0.1 246 chr2R 12189377 exon Cyp6g2 - chr2R 12189500 exon Cyp6g2 - chr2R 12189623 exon Cyp6g2 - chr2R_13_12185001 chr2R_12185001 RAL-395 988 chr2R 12187477 12187489 chr2R 12190068 12190079 30 2591 142.0 162.5 152.2 0.2 2602 chr2R 12187477 exon Cyp6g1 + chr2R 12188778 exon Cyp6g2 - chr2R 12190079 exon Cyp6g2 - chr2R_30_12185001 chr2R_12185001 RAL-395 989 chr2R 12187476 12187533 chr2R 12190080 12190123 112 2593 199.5 151.5 175.5 0.6 2647 chr2R 12187476 exon Cyp6g1 + chr2R 12188800 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_112_12185001 chr2R_12185001 RAL-395 990 chr2R 12217555 12217603 chr2R 12217662 12217683 22 105 5.5 8.0 6.8 2.8 128 chr2R 12217555 intergenic not near genes chr2R 12217619 intergenic not near genes chr2R 12217683 intergenic not near genes chr2R_22_12215001 chr2R_12215001 RAL-395 991 chr2R 12272302 12272354 chr2R 12272411 12272463 21 109 3.5 8.0 5.8 3.1 161 chr2R 12272302 intron Cam + chr2R 12272382 intron Cam + chr2R 12272463 intron Cam + chr2R_21_12270001 chr2R_12270001 RAL-395 992 chr2R 12284291 12284328 chr2R 12284401 12284438 11 109 0.0 6.5 3.2 2.6 147 chr2R 12284291 intron CG42700 + chr2R 12284364 intron CG42700 + chr2R 12284438 intron CG42700 + chr2R_11_12280001 chr2R_12280001 RAL-395 993 chr2R 12320701 12320735 chr2R 12320987 12321021 6 286 2.5 9.5 6.0 0.9 320 chr2R 12320701 3` UTR CR44316 - chr2R 12320861 intron CR44316 - chr2R 12321021 intergenic CR44316 -,CG13163 + chr2R_6_12320001 chr2R_12320001 RAL-395 994 chr2R 12363358 12363412 chr2R 12363816 12363838 23 455 9.0 11.5 10.2 2.1 480 chr2R 12363358 intergenic CG30043 + chr2R 12363598 intergenic CG30043 + chr2R 12363838 intergenic not near genes chr2R_23_12360001 chr2R_12360001 RAL-395 995 chr2R 12417436 12417442 chr2R 12417542 12417548 5 106 22.0 9.5 15.8 0.3 112 chr2R 12417436 exon CG13157 + chr2R 12417492 exon CG13157 + chr2R 12417548 exon CG13157 + chr2R_5_12415001 chr2R_12415001 RAL-395 996 chr2R 12417444 12417483 chr2R 12417541 12417589 31 103 6.5 9.0 7.8 3.5 145 chr2R 12417444 exon CG13157 + chr2R 12417516 exon CG13157 + chr2R 12417589 exon CG13157 + chr2R_31_12415001 chr2R_12415001 RAL-395 997 chr2R 12479100 12479157 chr2R 12479214 12479271 21 114 5.0 7.0 6.0 3.0 171 chr2R 12479100 intron Dh44-R2 + chr2R 12479186 intron Dh44-R2 + chr2R 12479271 intron Dh44-R2 + chr2R_21_12475001 chr2R_12475001 RAL-395 998 chr2R 12481141 12481162 chr2R 12482971 12482992 roo 10 1830 9.0 17.5 13.2 0.7 1851 chr2R 12481141 exon Dh44-R2 + chr2R 12482066 intron Dh44-R2 + chr2R 12482992 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-395 999 chr2R 12492071 12492123 chr2R 12492183 12492243 32 118 6.5 4.5 5.5 4.9 172 chr2R 12492071 intron fdl - chr2R 12492157 intron fdl - chr2R 12492243 intron fdl - chr2R_32_12490001 chr2R_12490001 RAL-395 1000 chr2R 12501666 12501722 chr2R 12503851 12503910 Rt1c 35 2187 11.5 8.5 10.0 3.2 2244 chr2R 12501666 intron fdl - chr2R 12502788 intron fdl - chr2R 12503910 intron fdl - chr2R_35_12500001 chr2R_12500001 RAL-395 1001 chr2R 12504124 12504180 chr2R 12504227 12504283 30 101 5.0 13.0 9.0 3.0 159 chr2R 12504124 intron fdl - chr2R 12504204 intron fdl - chr2R 12504283 intron fdl - chr2R_30_12500001 chr2R_12500001 RAL-395 1002 chr2R 12540448 12540497 chr2R 12540557 12540606 23 108 12.5 9.0 10.8 1.9 158 chr2R 12540448 intron fra + chr2R 12540527 intron fra + chr2R 12540606 intron fra + chr2R_23_12540001 chr2R_12540001 RAL-395 1003 chr2R 12565543 12565545 chr2R 12565947 12565949 4 404 0.0 9.0 4.5 0.7 406 chr2R 12565543 intergenic not near genes chr2R 12565746 intergenic Cyp301a1 + chr2R 12565949 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-395 1004 chr2R 12565568 12565595 chr2R 12565943 12565970 10 375 0.0 8.0 4.0 2.0 402 chr2R 12565568 intergenic not near genes chr2R 12565769 intergenic Cyp301a1 + chr2R 12565970 intergenic Cyp301a1 + chr2R_10_12565001 chr2R_12565001 RAL-395 1005 chr2R 12602783 12602837 chr2R 12602893 12602947 15 110 2.5 4.5 3.5 3.3 164 chr2R 12602783 intron Amph + chr2R 12602865 intron Amph + chr2R 12602947 intron Amph + chr2R_15_12600001 chr2R_12600001 RAL-395 1006 chr2R 12643761 12643817 chr2R 12643863 12643920 13 100 2.0 3.5 2.8 3.4 159 chr2R 12643761 intron CG8785 - chr2R 12643840 intron CG8785 - chr2R 12643920 exon CG8785 - chr2R_13_12640001 chr2R_12640001 RAL-395 1007 chr2R 12707510 12707549 chr2R 12715902 12715908 roo 15 8390 4.0 6.0 5.0 2.5 8398 chr2R 12707510 intron CG42663 + chr2R 12711709 intron CG42663 + chr2R 12715908 intron CG42663 + chr2R_15_12710001 chr2R_12710001 RAL-395 1008 chr2R 12734030 12734089 chr2R 12734137 12734193 25 104 4.5 10.0 7.2 3.0 163 chr2R 12734030 intron CG42663 + chr2R 12734112 intron CG42663 + chr2R 12734193 intron CG42663 + chr2R_25_12730001 chr2R_12730001 RAL-395 1009 chr2R 12789274 12789327 chr2R 12797663 12797716 roo 27 8388 2.5 8.5 5.5 4.2 8442 chr2R 12789274 intron,3` UTR sca +,CR45137 - chr2R 12793495 intron,intron sca +,CR45137 - chr2R 12797716 intron,3` UTR sca +,CR45137 - chr2R_27_12790001 chr2R_12790001 RAL-395 1010 chr2R 12798617 12798636 chr2R 12798893 12798909 15 276 10.5 22.0 16.2 0.9 292 chr2R 12798617 intron,3` UTR sca +,CR45137 - chr2R 12798763 intron,3` UTR sca +,CR45137 - chr2R 12798909 intron,3` UTR sca +,CR45137 - chr2R_15_12795001 chr2R_12795001 RAL-395 1011 chr2R 12807855 12807883 chr2R 12807979 12808007 12 123 3.5 15.5 9.5 1.1 152 chr2R 12807855 intergenic CG17580 + chr2R 12807931 intergenic CG17580 + chr2R 12808007 intergenic CG17580 + chr2R_12_12805001 chr2R_12805001 RAL-395 1012 chr2R 12819138 12819180 chr2R 12819288 12819326 6 146 2.0 4.0 3.0 1.5 188 chr2R 12819138 intergenic not near genes chr2R 12819232 intergenic not near genes chr2R 12819326 intergenic not near genes chr2R_6_12815001 chr2R_12815001 RAL-395 1013 chr2R 12819421 12819473 chr2R 12824523 12824578 jockey 24 5103 8.0 6.0 7.0 3.0 5157 chr2R 12819421 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824578 intergenic not near genes chr2R_24_12820001 chr2R_12820001 RAL-395 1014 chr2R 12834144 12834187 chr2R 12834253 12834295 14 109 4.0 9.0 6.5 1.9 151 chr2R 12834144 intergenic not near genes chr2R 12834220 intergenic not near genes chr2R 12834295 intergenic not near genes chr2R_14_12830001 chr2R_12830001 RAL-395 1015 chr2R 12951640 12951694 chr2R 12951747 12951801 33 106 0.5 5.5 3.0 8.2 161 chr2R 12951640 intron,intron CG44251 -,CG44250 - chr2R 12951720 intron,intron CG44251 -,CG44250 - chr2R 12951801 intron,intron CG44251 -,CG44250 - chr2R_33_12950001 chr2R_12950001 RAL-395 1016 chr2R 13078730 13078774 chr2R 13078853 13078897 24 123 9.5 4.0 6.8 3.1 167 chr2R 13078730 intron Drl-2 - chr2R 13078814 intron Drl-2 - chr2R 13078897 intron Drl-2 - chr2R_24_13075001 chr2R_13075001 RAL-395 1017 chr2R 13106377 13106426 chr2R 13106495 13106550 21 120 6.5 8.5 7.5 2.5 173 chr2R 13106377 intergenic not near genes chr2R 13106464 intergenic not near genes chr2R 13106550 intergenic not near genes chr2R_21_13105001 chr2R_13105001 RAL-395 1018 chr2R 13136819 13136863 chr2R 13141643 13141687 Doc 24 4824 16.0 13.0 14.5 1.5 4868 chr2R 13136819 exon Cap-G + chr2R 13139253 intron Cap-G + chr2R 13141687 intron Cap-G + chr2R_24_13135001 chr2R_13135001 RAL-395 1019 chr2R 13167406 13167437 chr2R 13167525 13167555 8 119 10.0 0.0 5.0 1.3 149 chr2R 13167406 intron GLaz - chr2R 13167480 intron GLaz - chr2R 13167555 intron GLaz - chr2R_8_13165001 chr2R_13165001 RAL-395 1020 chr2R 13170692 13170740 chr2R 13170807 13170855 22 114 8.0 1.0 4.5 4.0 163 chr2R 13170692 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170774 intergenic CR45142 -,Spt-I + chr2R 13170855 intergenic CR45142 -,Spt-I + chr2R_22_13170001 chr2R_13170001 RAL-395 1021 chr2R 13172070 13172123 chr2R 13172174 13172227 8 99 5.0 3.5 4.2 1.5 157 chr2R 13172070 intron AGBE + chr2R 13172148 intron AGBE + chr2R 13172227 intron AGBE + chr2R_8_13170001 chr2R_13170001 RAL-395 1022 chr2R 13194832 13194837 chr2R 13194947 13194952 5 114 28.0 18.0 23.0 0.2 120 chr2R 13194832 intergenic not near genes chr2R 13194892 intergenic not near genes chr2R 13194952 intergenic not near genes chr2R_5_13190001 chr2R_13190001 RAL-395 1023 chr2R 13194838 13194854 chr2R 13194946 13194969 14 114 20.5 17.5 19.0 0.7 131 chr2R 13194838 intergenic not near genes chr2R 13194904 intergenic not near genes chr2R 13194969 intergenic not near genes chr2R_14_13190001 chr2R_13190001 RAL-395 1024 chr2R 13220512 13220553 chr2R 13220616 13220678 8 114 0.0 4.5 2.2 2.5 166 chr2R 13220512 intron CG17059 + chr2R 13220595 intron CG17059 + chr2R 13220678 intron CG17059 + chr2R_8_13220001 chr2R_13220001 RAL-395 1025 chr2R 13241039 13241094 chr2R 13241162 13241217 27 122 7.0 7.0 7.0 3.4 178 chr2R 13241039 intergenic GstE14 + chr2R 13241128 intergenic GstE14 + chr2R 13241217 intergenic GstE14 + chr2R_27_13240001 chr2R_13240001 RAL-395 1026 chr2R 13376628 13376637 chr2R 13376764 13376772 9 136 4.0 14.0 9.0 0.9 144 chr2R 13376628 intron CG10814 - chr2R 13376700 intron CG10814 - chr2R 13376772 intron CG10814 - chr2R_9_13375001 chr2R_13375001 RAL-395 1027 chr2R 13403897 13403938 chr2R 13404008 13404048 18 111 5.5 1.5 3.5 4.0 151 chr2R 13403897 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404048 intergenic not near genes chr2R_18_13400001 chr2R_13400001 RAL-395 1028 chr2R 13431463 13431518 chr2R 13431568 13431623 18 105 4.0 8.0 6.0 2.6 160 chr2R 13431463 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431623 intron CG42321 - chr2R_18_13430001 chr2R_13430001 RAL-395 1029 chr2R 13438862 13438922 chr2R 13440154 13440214 29 1293 51.0 56.0 53.5 0.5 1352 chr2R 13438862 5` UTR CG42321 - chr2R 13439538 3` UTR cnn - chr2R 13440214 exon cnn - chr2R_29_13435001 chr2R_13435001 RAL-395 1030 chr2R 13464451 13464499 chr2R 13464607 13464656 28 157 8.5 12.0 10.2 2.5 205 chr2R 13464451 intron arr - chr2R 13464554 intron arr - chr2R 13464656 intron arr - chr2R_28_13460001 chr2R_13460001 RAL-395 1031 chr2R 13468861 13468871 chr2R 13468964 13468974 7 103 22.5 0.0 11.2 0.6 113 chr2R 13468861 intron arr - chr2R 13468918 intron arr - chr2R 13468974 intron arr - chr2R_7_13465001 chr2R_13465001 RAL-395 1032 chr2R 13480825 13480868 chr2R 13481076 13481119 21 251 5.5 6.5 6.0 3.0 294 chr2R 13480825 intron arr - chr2R 13480972 intron arr - chr2R 13481119 intron arr - chr2R_21_13480001 chr2R_13480001 RAL-395 1033 chr2R 13554755 13554773 chr2R 13554866 13554884 8 111 0.5 11.5 6.0 1.1 129 chr2R 13554755 intron Roe1 + chr2R 13554820 intron Roe1 + chr2R 13554884 intron Roe1 + chr2R_8_13550001 chr2R_13550001 RAL-395 1034 chr2R 13566235 13566284 chr2R 13566339 13566371 17 104 8.0 0.0 4.0 3.4 136 chr2R 13566235 intergenic not near genes chr2R 13566303 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_17_13565001 chr2R_13565001 RAL-395 1035 chr2R 13571502 13571556 chr2R 13571629 13571683 13 126 0.5 9.5 5.0 2.2 181 chr2R 13571502 3` UTR CG42807 - chr2R 13571592 3` UTR CG42807 - chr2R 13571683 exon CG42807 - chr2R_13_13570001 chr2R_13570001 RAL-395 1036 chr2R 13573765 13573813 chr2R 13573961 13574009 27 195 15.5 14.0 14.8 1.7 244 chr2R 13573765 3` UTR CG42808 - chr2R 13573887 exon CG42808 - chr2R 13574009 exon CG42808 - chr2R_27_13570001 chr2R_13570001 RAL-395 1037 chr2R 13580486 13580519 chr2R 13580862 13580894 jockey 14 376 2.0 11.5 6.8 1.8 408 chr2R 13580486 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580894 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_14_13580001 chr2R_13580001 RAL-395 1038 chr2R 13580525 13580527 chr2R 13580861 13580903 jockey 4 366 1.5 11.0 6.2 0.6 378 chr2R 13580525 3` UTR CG6191 - chr2R 13580714 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580903 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-395 1039 chr2R 13601509 13601538 chr2R 13601612 13601629 18 100 14.5 8.5 11.5 1.4 120 chr2R 13601509 intergenic CG43058 - chr2R 13601569 intergenic CG43058 - chr2R 13601629 intergenic not near genes chr2R_18_13600001 chr2R_13600001 RAL-395 1040 chr2R 13632292 13632313 chr2R 13632405 13632427 20 114 24.0 19.5 21.8 0.9 135 chr2R 13632292 intron fas + chr2R 13632360 intron fas + chr2R 13632427 intron fas + chr2R_20_13630001 chr2R_13630001 RAL-395 1041 chr2R 13650000 13650034 chr2R 13650121 13650155 5 121 4.5 9.5 7.0 0.6 155 chr2R 13650000 intron fas + chr2R 13650078 intron fas + chr2R 13650155 intron fas + chr2R_5_13650001 chr2R_13650001 RAL-395 1042 chr2R 13652680 13652734 chr2R 13652785 13652839 24 105 7.5 11.5 9.5 2.3 159 chr2R 13652680 intron fas + chr2R 13652760 intron fas + chr2R 13652839 intron fas + chr2R_24_13650001 chr2R_13650001 RAL-395 1043 chr2R 13684264 13684272 chr2R 13684368 13684376 5 104 0.0 11.5 5.8 0.7 112 chr2R 13684264 intron fas + chr2R 13684320 intron fas + chr2R 13684376 intron fas + chr2R_5_13680001 chr2R_13680001 RAL-395 1044 chr2R 13702134 13702185 chr2R 13702239 13702290 27 104 8.5 11.5 10.0 2.5 156 chr2R 13702134 intron fas + chr2R 13702212 intron fas + chr2R 13702290 intron fas + chr2R_27_13700001 chr2R_13700001 RAL-395 1045 chr2R 13709807 13709827 chr2R 13709940 13709960 9 133 8.0 6.0 7.0 1.1 153 chr2R 13709807 intron fas + chr2R 13709884 intron fas + chr2R 13709960 intron fas + chr2R_9_13705001 chr2R_13705001 RAL-395 1046 chr2R 13721177 13721229 chr2R 13721286 13721338 37 108 8.0 10.0 9.0 3.7 161 chr2R 13721177 intron fas + chr2R 13721258 intron fas + chr2R 13721338 intron fas + chr2R_37_13720001 chr2R_13720001 RAL-395 1047 chr2R 13728102 13728106 chr2R 13735789 13735793 opus 5 7687 17.0 3.0 10.0 0.5 7691 chr2R 13728102 intron fas + chr2R 13731948 intron fas + chr2R 13735793 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-395 1048 chr2R 13728124 13728143 chr2R 13735811 13735830 opus 8 7687 8.0 6.0 7.0 1.0 7706 chr2R 13728124 intron fas + chr2R 13731977 intron fas + chr2R 13735830 intron fas + chr2R_8_13730001 chr2R_13730001 RAL-395 1049 chr2R 13768957 13769009 chr2R 13769081 13769134 25 125 9.0 7.5 8.2 2.7 177 chr2R 13768957 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769134 intergenic not near genes chr2R_25_13765001 chr2R_13765001 RAL-395 1050 chr2R 13790303 13790316 chr2R 13790405 13790418 7 102 19.0 0.0 9.5 0.7 115 chr2R 13790303 intergenic not near genes chr2R 13790360 intergenic not near genes chr2R 13790418 intergenic not near genes chr2R_7_13790001 chr2R_13790001 RAL-395 1051 chr2R 13805311 13805343 chr2R 13805594 13805626 24 281 2.5 5.5 4.0 4.8 315 chr2R 13805311 intergenic Cpr50Cb +,stj + chr2R 13805468 intergenic Cpr50Cb +,stj + chr2R 13805626 intergenic stj +,Cpr50Cb + chr2R_24_13805001 chr2R_13805001 RAL-395 1052 chr2R 13905586 13905629 chr2R 13907594 13907637 Rt1a 25 2008 13.0 16.5 14.8 1.6 2051 chr2R 13905586 intron shot - chr2R 13906612 intron shot - chr2R 13907637 intron shot - chr2R_25_13905001 chr2R_13905001 RAL-395 1053 chr2R 13922599 13922657 chr2R 13922701 13922759 26 102 6.0 9.0 7.5 3.1 160 chr2R 13922599 intron shot - chr2R 13922679 intron shot - chr2R 13922759 intron shot - chr2R_26_13920001 chr2R_13920001 RAL-395 1054 chr2R 14003608 14003647 chr2R 14003731 14003770 17 123 3.0 9.0 6.0 2.4 162 chr2R 14003608 intron mam + chr2R 14003689 intron mam + chr2R 14003770 intron mam + chr2R_17_14000001 chr2R_14000001 RAL-395 1055 chr2R 14014948 14014982 chr2R 14015768 14015802 7 820 6.5 5.5 6.0 1.0 854 chr2R 14014948 intron mam + chr2R 14015375 intron mam + chr2R 14015802 intron mam + chr2R_7_14015001 chr2R_14015001 RAL-395 1056 chr2R 14026514 14026518 chr2R 14026617 14026621 6 102 15.5 9.5 12.5 0.4 107 chr2R 14026514 intron mam + chr2R 14026568 intron mam + chr2R 14026621 intron mam + chr2R_6_14025001 chr2R_14025001 RAL-395 1057 chr2R 14037281 14037289 chr2R 14037390 14037396 4 108 0.0 15.0 7.5 0.5 115 chr2R 14037281 intron mam + chr2R 14037338 intron mam + chr2R 14037396 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-395 1058 chr2R 14047164 14047196 chr2R 14047316 14047349 25 152 3.5 17.0 10.2 2.2 185 chr2R 14047164 intron mam + chr2R 14047256 intron mam + chr2R 14047349 intron mam + chr2R_25_14045001 chr2R_14045001 RAL-395 1059 chr2R 14049095 14049117 chr2R 14049226 14049248 8 131 11.5 0.0 5.8 1.2 153 chr2R 14049095 intron mam + chr2R 14049172 intron mam + chr2R 14049248 intron mam + chr2R_8_14045001 chr2R_14045001 RAL-395 1060 chr2R 14050829 14050852 chr2R 14050941 14050965 10 111 17.5 16.5 17.0 0.6 136 chr2R 14050829 intron mam + chr2R 14050897 intron mam + chr2R 14050965 intron mam + chr2R_10_14050001 chr2R_14050001 RAL-395 1061 chr2R 14168340 14168392 chr2R 14168455 14168507 12 115 8.0 8.0 8.0 1.3 167 chr2R 14168340 intergenic CG18327 +,CG18324 + chr2R 14168424 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168507 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_12_14165001 chr2R_14165001 RAL-395 1062 chr2R 14223249 14223281 chr2R 14223351 14223383 14 102 8.5 9.0 8.8 1.4 134 chr2R 14223249 intron CG8468 + chr2R 14223316 intron CG8468 + chr2R 14223383 intron CG8468 + chr2R_14_14220001 chr2R_14220001 RAL-395 1063 chr2R 14252376 14252433 chr2R 14252492 14252549 19 116 6.0 3.0 4.5 3.5 173 chr2R 14252376 exon Mdr50 + chr2R 14252462 3` UTR Mdr50 + chr2R 14252549 3` UTR Mdr50 + chr2R_19_14250001 chr2R_14250001 RAL-395 1064 chr2R 14265420 14265464 chr2R 14265522 14265566 20 101 9.0 9.0 9.0 2.0 146 chr2R 14265420 intron CG8547 - chr2R 14265493 intron CG8547 - chr2R 14265566 intron CG8547 - chr2R_20_14265001 chr2R_14265001 RAL-395 1065 chr2R 14266735 14266792 chr2R 14266836 14266894 44 102 8.5 10.5 9.5 4.2 159 chr2R 14266735 intron CG8547 - chr2R 14266814 intron CG8547 - chr2R 14266894 intron CG8547 - chr2R_44_14265001 chr2R_14265001 RAL-395 1066 chr2R 14278333 14278353 chr2R 14278437 14278448 9 103 18.5 8.5 13.5 0.6 115 chr2R 14278333 5` UTR Ih + chr2R 14278390 5` UTR Ih + chr2R 14278448 5` UTR Ih + chr2R_9_14275001 chr2R_14275001 RAL-395 1067 chr2R 14285026 14285050 chr2R 14285149 14285173 15 123 6.0 9.5 7.8 1.7 147 chr2R 14285026 intron Ih + chr2R 14285100 intron Ih + chr2R 14285173 intron Ih + chr2R_15_14285001 chr2R_14285001 RAL-395 1068 chr2R 14352661 14352712 chr2R 14352781 14352832 18 118 9.0 6.0 7.5 2.1 171 chr2R 14352661 exon CG8613 + chr2R 14352746 intron CG8613 + chr2R 14352832 intron CG8613 + chr2R_18_14350001 chr2R_14350001 RAL-395 1069 chr2R 14357539 14357733 chr2R 14357651 14357890 22 126 13.0 7.0 10.0 2.0 351 chr2R 14357539 intergenic CG8617 -,Arc1 - chr2R 14357714 intergenic Arc1 -,CG8617 - chr2R 14357890 intergenic Arc1 - chr2R_22_14355001 chr2R_14355001 RAL-395 1070 chr2R 14373474 14373532 chr2R 14373587 14373612 36 108 7.5 11.0 9.2 3.5 138 chr2R 14373474 exon Obp50d + chr2R 14373543 exon Obp50d + chr2R 14373612 exon Obp50d + chr2R_36_14370001 chr2R_14370001 RAL-395 1071 chr2R 14394208 14394222 chr2R 14399023 14399037 Doc 12 4815 25.0 0.0 12.5 0.9 4829 chr2R 14394208 intergenic not near genes chr2R 14396622 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_12_14395001 chr2R_14395001 RAL-395 1072 chr2R 14400503 14400553 chr2R 14400607 14400658 22 105 4.0 9.0 6.5 2.9 155 chr2R 14400503 intergenic not near genes chr2R 14400580 intergenic not near genes chr2R 14400658 intergenic not near genes chr2R_22_14400001 chr2R_14400001 RAL-395 1073 chr2R 14467282 14467327 chr2R 14476466 14476511 roo 21 9183 9.0 10.0 9.5 2.0 9229 chr2R 14467282 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476511 5` UTR CR44462 + chr2R_21_14470001 chr2R_14470001 RAL-395 1074 chr2R 14497361 14497417 chr2R 14498550 14498609 1360 21 1189 0.0 7.0 3.5 4.7 1248 chr2R 14497361 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498609 3` UTR Cpsf160 - chr2R_21_14495001 chr2R_14495001 RAL-395 1075 chr2R 14514459 14514493 chr2R 14514578 14514627 9 121 9.5 7.5 8.5 0.9 168 chr2R 14514459 intron,intron Cpr51A -,CG30197 + chr2R 14514543 intron,intron Cpr51A -,CG30197 + chr2R 14514627 intron,intron Cpr51A -,CG30197 + chr2R_9_14510001 chr2R_14510001 RAL-395 1076 chr2R 14517219 14517270 chr2R 14517377 14517428 30 158 7.0 6.0 6.5 4.0 209 chr2R 14517219 intergenic not near genes chr2R 14517324 intergenic not near genes chr2R 14517428 intergenic not near genes chr2R_30_14515001 chr2R_14515001 RAL-395 1077 chr2R 14530347 14530379 chr2R 14530462 14530485 5 111 10.0 2.0 6.0 0.7 138 chr2R 14530347 intron ttv + chr2R 14530416 intron ttv + chr2R 14530485 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-395 1078 chr2R 14533752 14533763 chr2R 14533860 14533871 6 108 11.0 4.5 7.8 0.7 119 chr2R 14533752 intron ttv + chr2R 14533812 intron ttv + chr2R 14533871 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-395 1079 chr2R 14542736 14542792 chr2R 14542859 14542915 41 122 8.5 5.5 7.0 5.1 179 chr2R 14542736 intron ttv + chr2R 14542826 intron ttv + chr2R 14542915 intron ttv + chr2R_41_14540001 chr2R_14540001 RAL-395 1080 chr2R 14565536 14565589 chr2R 14565639 14565692 14 103 8.5 6.0 7.2 1.7 156 chr2R 14565536 intron ttv + chr2R 14565614 intron ttv + chr2R 14565692 intron ttv + chr2R_14_14565001 chr2R_14565001 RAL-395 1081 chr2R 14623877 14623899 chr2R 14623998 14624021 11 119 3.5 12.5 8.0 1.2 144 chr2R 14623877 intron Uhg5 + chr2R 14623949 5` UTR Uhg5 + chr2R 14624021 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703c + chr2R_11_14620001 chr2R_14620001 RAL-395 1082 chr2R 14661119 14661173 chr2R 14661231 14661254 12 108 7.5 6.0 6.8 1.5 135 chr2R 14661119 intergenic not near genes chr2R 14661186 intergenic not near genes chr2R 14661254 intergenic not near genes chr2R_12_14660001 chr2R_14660001 RAL-395 1083 chr2R 14714821 14714855 chr2R 14714963 14714990 5 139 12.5 13.5 13.0 0.4 169 chr2R 14714821 intergenic not near genes chr2R 14714906 intergenic not near genes chr2R 14714990 intergenic not near genes chr2R_5_14710001 chr2R_14710001 RAL-395 1084 chr2R 14716995 14717032 chr2R 14717182 14717218 12 187 0.0 0.0 0.0 12.0 223 chr2R 14716995 intergenic not near genes chr2R 14717106 intergenic not near genes chr2R 14717218 intergenic not near genes chr2R_12_14715001 chr2R_14715001 RAL-395 1085 chr2R 14722285 14722294 chr2R 14722415 14722424 4 130 14.5 16.0 15.2 0.2 139 chr2R 14722285 intergenic not near genes chr2R 14722354 intergenic not near genes chr2R 14722424 intergenic not near genes chr2R_4_14720001 chr2R_14720001 RAL-395 1086 chr2R 14728195 14728246 chr2R 14728298 14728355 22 108 5.0 7.0 6.0 3.1 160 chr2R 14728195 intergenic not near genes chr2R 14728275 intergenic not near genes chr2R 14728355 intergenic not near genes chr2R_22_14725001 chr2R_14725001 RAL-395 1087 chr2R 14796543 14796554 chr2R 14796650 14796661 5 107 0.5 14.0 7.2 0.6 118 chr2R 14796543 intron kn - chr2R 14796602 intron kn - chr2R 14796661 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-395 1088 chr2R 14803450 14803467 chr2R 14803556 14803573 8 106 0.0 9.0 4.5 1.5 123 chr2R 14803450 intron kn - chr2R 14803512 intron kn - chr2R 14803573 intron kn - chr2R_8_14800001 chr2R_14800001 RAL-395 1089 chr2R 14826372 14826387 chr2R 14826502 14826517 7 129 5.5 3.0 4.2 1.3 145 chr2R 14826372 intergenic not near genes chr2R 14826444 intergenic not near genes chr2R 14826517 intergenic not near genes chr2R_7_14825001 chr2R_14825001 RAL-395 1090 chr2R 14846452 14846475 chr2R 14846554 14846578 21 102 19.5 16.0 17.8 1.1 126 chr2R 14846452 exon CG10209 - chr2R 14846515 exon CG10209 - chr2R 14846578 exon CG10209 - chr2R_21_14845001 chr2R_14845001 RAL-395 1091 chr2R 14855003 14855035 chr2R 14855121 14855153 15 118 13.5 0.0 6.8 1.9 150 chr2R 14855003 5` UTR Ciao1 - chr2R 14855078 intergenic Ciao1 -,HPS1 + chr2R 14855153 intergenic Ciao1 -,HPS1 + chr2R_15_14855001 chr2R_14855001 RAL-395 1092 chr2R 14880828 14880874 chr2R 14881473 14881521 18 646 6.0 5.5 5.8 2.6 693 chr2R 14880828 exon Cyp6a9 - chr2R 14881174 exon Cyp6a9 - chr2R 14881521 intergenic Cyp6a9 - chr2R_18_14880001 chr2R_14880001 RAL-395 1093 chr2R 14889192 14889213 chr2R 14897826 14897844 Max-element 5 8632 16.5 2.0 9.2 0.5 8652 chr2R 14889192 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-395 1094 chr2R 14911676 14911728 chr2R 14911823 14911877 18 149 3.5 4.5 4.0 3.6 201 chr2R 14911676 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911877 intron CG10249 - chr2R_18_14910001 chr2R_14910001 RAL-395 1095 chr2R 14917824 14917830 chr2R 14917935 14917941 5 111 25.5 6.0 15.8 0.3 117 chr2R 14917824 intron CG10249 - chr2R 14917882 intron CG10249 - chr2R 14917941 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-395 1096 chr2R 14917831 14917882 chr2R 14917934 14917993 30 110 9.5 5.5 7.5 3.5 162 chr2R 14917831 intron CG10249 - chr2R 14917912 intron CG10249 - chr2R 14917993 intron CG10249 - chr2R_30_14915001 chr2R_14915001 RAL-395 1097 chr2R 14930832 14930842 chr2R 14930951 14930954 5 117 0.0 0.0 0.0 5.0 122 chr2R 14930832 intron CG10253 - chr2R 14930893 intron CG10253 - chr2R 14930954 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-395 1098 chr2R 14955643 14955700 chr2R 14955758 14955784 15 113 7.0 6.0 6.5 2.0 141 chr2R 14955643 intron aPKC - chr2R 14955714 intron aPKC - chr2R 14955784 intron aPKC - chr2R_15_14955001 chr2R_14955001 RAL-395 1099 chr2R 14971179 14971187 chr2R 14971298 14971306 4 119 0.0 7.5 3.8 0.8 127 chr2R 14971179 intron ckn + chr2R 14971242 intron ckn + chr2R 14971306 intron ckn + chr2R_4_14970001 chr2R_14970001 RAL-395 1100 chr2R 14987355 14987413 chr2R 14987525 14987583 27 169 10.5 5.0 7.8 3.1 228 chr2R 14987355 intron pcs + chr2R 14987469 intron pcs + chr2R 14987583 intron pcs + chr2R_27_14985001 chr2R_14985001 RAL-395 1101 chr2R 15004703 15004753 chr2R 15005058 15005108 jockey 18 355 7.5 8.0 7.8 2.0 405 chr2R 15004703 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005108 intergenic not near genes chr2R_18_15000001 chr2R_15000001 RAL-395 1102 chr2R 15015430 15015485 chr2R 15022878 15022935 mdg1 21 7447 4.0 6.5 5.2 3.4 7505 chr2R 15015430 intron hbs + chr2R 15019182 intron hbs + chr2R 15022935 intron hbs + chr2R_21_15015001 chr2R_15015001 RAL-395 1103 chr2R 15051057 15051110 chr2R 15051165 15051218 23 108 7.0 9.0 8.0 2.6 161 chr2R 15051057 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051218 intergenic not near genes chr2R_23_15050001 chr2R_15050001 RAL-395 1104 chr2R 15084960 15085004 chr2R 15092035 15092079 297 12 7075 10.5 8.0 9.2 1.2 7119 chr2R 15084960 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092079 5` UTR CR44457 + chr2R_12_15085001 chr2R_15085001 RAL-395 1105 chr2R 15092181 15092189 chr2R 15092281 15092292 6 102 5.0 11.0 8.0 0.7 111 chr2R 15092181 intron CR44457 + chr2R 15092236 5` UTR CR44457 + chr2R 15092292 5` UTR CR44457 + chr2R_6_15090001 chr2R_15090001 RAL-395 1106 chr2R 15117095 15117144 chr2R 15117298 15117346 22 203 10.5 7.0 8.8 2.2 251 chr2R 15117095 intron chn + chr2R 15117220 intron chn + chr2R 15117346 intron chn + chr2R_22_15115001 chr2R_15115001 RAL-395 1107 chr2R 15119290 15119347 chr2R 15127797 15127854 Tirant 30 8506 3.5 5.0 4.2 5.8 8564 chr2R 15119290 intron chn + chr2R 15123572 intron chn + chr2R 15127854 intron chn + chr2R_30_15120001 chr2R_15120001 RAL-395 1108 chr2R 15133421 15133460 chr2R 15133564 15133603 17 143 6.0 9.0 7.5 2.0 182 chr2R 15133421 intron chn + chr2R 15133512 intron chn + chr2R 15133603 intron chn + chr2R_17_15130001 chr2R_15130001 RAL-395 1109 chr2R 15137942 15138003 chr2R 15138047 15138086 26 106 7.5 9.0 8.2 2.8 144 chr2R 15137942 intron chn + chr2R 15138014 intron chn + chr2R 15138086 intron chn + chr2R_26_15135001 chr2R_15135001 RAL-395 1110 chr2R 15160217 15160272 chr2R 15165545 15165596 32 5326 56.5 60.0 58.2 0.5 5379 chr2R 15160217 intron igl + chr2R 15162906 intron igl + chr2R 15165596 intron igl + chr2R_32_15160001 chr2R_15160001 RAL-395 1111 chr2R 15193311 15193322 chr2R 15193415 15193426 4 104 13.5 0.0 6.8 0.5 115 chr2R 15193311 intergenic Sfp51E - chr2R 15193368 intergenic Sfp51E - chr2R 15193426 intergenic Sfp51E - chr2R_4_15190001 chr2R_15190001 RAL-395 1112 chr2R 15198288 15198313 chr2R 15198654 15198679 19 366 17.5 0.0 8.8 1.9 391 chr2R 15198288 intergenic not near genes chr2R 15198484 intergenic not near genes chr2R 15198679 intergenic GPHR - chr2R_19_15195001 chr2R_15195001 RAL-395 1113 chr2R 15202935 15202991 chr2R 15203051 15203103 27 115 5.5 14.0 9.8 2.5 168 chr2R 15202935 intron,exon CG11807 +,CG42391 + chr2R 15203019 intron CG11807 + chr2R 15203103 exon CG11807 + chr2R_27_15200001 chr2R_15200001 RAL-395 1114 chr2R 15230138 15230186 chr2R 15230268 15230321 16 132 11.0 5.0 8.0 1.8 183 chr2R 15230138 intron,5` UTR Fs -,CR44370 + chr2R 15230230 intron,5` UTR Fs -,CR44370 + chr2R 15230321 intron,5` UTR Fs -,CR44370 + chr2R_16_15230001 chr2R_15230001 RAL-395 1115 chr2R 15235054 15235082 chr2R 15235208 15235227 15 153 6.0 3.5 4.8 2.6 173 chr2R 15235054 intron Fs - chr2R 15235140 intron Fs - chr2R 15235227 intron Fs - chr2R_15_15235001 chr2R_15235001 RAL-395 1116 chr2R 15333900 15333954 chr2R 15334087 15334140 16 184 7.0 6.0 6.5 2.1 240 chr2R 15333900 exon Hr51 + chr2R 15334020 intron Hr51 + chr2R 15334140 intron Hr51 + chr2R_16_15330001 chr2R_15330001 RAL-395 1117 chr2R 15351306 15351313 chr2R 15351437 15351444 5 131 22.5 22.0 22.2 0.2 138 chr2R 15351306 intron unc-5 + chr2R 15351375 intron unc-5 + chr2R 15351444 intron unc-5 + chr2R_5_15350001 chr2R_15350001 RAL-395 1118 chr2R 15351314 15351318 chr2R 15351435 15351449 6 129 20.5 21.0 20.8 0.3 135 chr2R 15351314 intron unc-5 + chr2R 15351382 intron unc-5 + chr2R 15351449 intron unc-5 + chr2R_6_15350001 chr2R_15350001 RAL-395 1119 chr2R 15433575 15433597 chr2R 15433684 15433706 13 109 16.5 7.5 12.0 1.0 131 chr2R 15433575 intron CG43729 + chr2R 15433640 intron CG43729 + chr2R 15433706 intron CG43729 + chr2R_13_15430001 chr2R_15430001 RAL-395 1120 chr2R 15460026 15460081 chr2R 15460128 15460165 28 101 10.0 8.0 9.0 2.8 139 chr2R 15460026 intron CG43729 + chr2R 15460096 intron CG43729 + chr2R 15460165 intron CG43729 + chr2R_28_15460001 chr2R_15460001 RAL-395 1121 chr2R 15497405 15497426 chr2R 15497512 15497526 11 107 12.0 7.5 9.8 1.0 121 chr2R 15497405 intergenic CG12964 - chr2R 15497466 intergenic CG12964 - chr2R 15497526 intergenic CG12964 - chr2R_11_15495001 chr2R_15495001 RAL-395 1122 chr2R 15498135 15498193 chr2R 15498243 15498301 9 108 2.5 0.0 1.2 4.1 166 chr2R 15498135 intergenic not near genes chr2R 15498218 intergenic not near genes chr2R 15498301 intergenic not near genes chr2R_9_15495001 chr2R_15495001 RAL-395 1123 chr2R 15606105 15606128 chr2R 15606208 15606231 10 101 5.5 8.5 7.0 1.2 126 chr2R 15606105 intergenic not near genes chr2R 15606168 intergenic not near genes chr2R 15606231 intergenic not near genes chr2R_10_15605001 chr2R_15605001 RAL-395 1124 chr2R 15702944 15702953 chr2R 15703047 15703056 4 103 15.5 8.0 11.8 0.3 112 chr2R 15702944 intergenic not near genes chr2R 15703000 intergenic not near genes chr2R 15703056 intergenic not near genes chr2R_4_15700001 chr2R_15700001 RAL-395 1125 chr2R 15818780 15818797 chr2R 15819009 15819026 5 229 8.5 4.0 6.2 0.7 246 chr2R 15818780 intron tun + chr2R 15818903 intron tun + chr2R 15819026 intron tun + chr2R_5_15815001 chr2R_15815001 RAL-395 1126 chr2R 15818798 15818835 chr2R 15819008 15819064 14 227 2.5 4.0 3.2 3.3 266 chr2R 15818798 intron tun + chr2R 15818931 intron tun + chr2R 15819064 intron tun + chr2R_14_15815001 chr2R_15815001 RAL-395 1127 chr2R 15869307 15869368 chr2R 15869413 15869474 33 105 4.0 3.0 3.5 7.3 167 chr2R 15869307 intergenic Rif1 -,sli - chr2R 15869390 intergenic sli -,Rif1 - chr2R 15869474 intergenic sli -,Rif1 - chr2R_33_15865001 chr2R_15865001 RAL-395 1128 chr2R 15898856 15898910 chr2R 15898979 15899034 24 123 6.5 12.0 9.2 2.4 178 chr2R 15898856 intron sli - chr2R 15898945 intron sli - chr2R 15899034 intron sli - chr2R_24_15895001 chr2R_15895001 RAL-395 1129 chr2R 15930355 15930363 chr2R 15930458 15930465 6 103 26.0 0.5 13.2 0.4 110 chr2R 15930355 intron bdg - chr2R 15930410 intron bdg - chr2R 15930465 intron bdg - chr2R_6_15930001 chr2R_15930001 RAL-395 1130 chr2R 16054924 16054962 chr2R 16055033 16055071 22 109 11.5 13.5 12.5 1.6 147 chr2R 16054924 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055071 intron CG8405 + chr2R_22_16050001 chr2R_16050001 RAL-395 1131 chr2R 16061705 16061713 chr2R 16064359 16064374 Burdock 5 2660 14.5 6.5 10.5 0.4 2669 chr2R 16061705 intergenic not near genes chr2R 16063040 intergenic not near genes chr2R 16064374 intergenic not near genes chr2R_5_16060001 chr2R_16060001 RAL-395 1132 chr2R 16225176 16225235 chr2R 16225310 16225369 25 132 7.0 12.0 9.5 2.4 193 chr2R 16225176 5` UTR CG15706 - chr2R 16225272 5` UTR CG15706 - chr2R 16225369 intron CG15706 - chr2R_25_16225001 chr2R_16225001 RAL-395 1133 chr2R 16245604 16245661 chr2R 16245718 16245775 36 113 5.0 11.5 8.2 3.9 171 chr2R 16245604 intron CngA - chr2R 16245690 intron CngA - chr2R 16245775 intron CngA - chr2R_36_16245001 chr2R_16245001 RAL-395 1134 chr2R 16279356 16279407 chr2R 16279467 16279518 10 111 0.0 9.0 4.5 1.8 162 chr2R 16279356 intergenic not near genes chr2R 16279437 intergenic not near genes chr2R 16279518 intergenic CG15704 + chr2R_10_16275001 chr2R_16275001 RAL-395 1135 chr2R 16352841 16352865 chr2R 16352950 16352974 14 109 11.5 5.0 8.2 1.5 133 chr2R 16352841 intergenic not near genes chr2R 16352908 intergenic not near genes chr2R 16352974 intergenic not near genes chr2R_14_16350001 chr2R_16350001 RAL-395 1136 chr2R 16406697 16406749 chr2R 16406801 16406853 18 104 6.0 7.0 6.5 2.4 156 chr2R 16406697 intron Sema-2b + chr2R 16406775 intron Sema-2b + chr2R 16406853 intron Sema-2b + chr2R_18_16405001 chr2R_16405001 RAL-395 1137 chr2R 16544844 16544870 chr2R 16544955 16544981 11 110 0.0 0.0 0.0 11.0 137 chr2R 16544844 intergenic not near genes chr2R 16544912 intergenic not near genes chr2R 16544981 intergenic not near genes chr2R_11_16540001 chr2R_16540001 RAL-395 1138 chr2R 16571847 16571906 chr2R 16571968 16572026 34 120 4.0 7.0 5.5 5.2 179 chr2R 16571847 intergenic CG4927 + chr2R 16571936 intergenic CG4927 + chr2R 16572026 intergenic CG4927 + chr2R_34_16570001 chr2R_16570001 RAL-395 1139 chr2R 16601493 16601551 chr2R 16601630 16601688 26 136 7.0 9.0 8.0 2.9 195 chr2R 16601493 intron CG8303 - chr2R 16601590 intron CG8303 - chr2R 16601688 intron CG8303 - chr2R_26_16600001 chr2R_16600001 RAL-395 1140 chr2R 16617058 16617077 chr2R 16617163 16617182 7 105 8.5 12.5 10.5 0.6 124 chr2R 16617058 intron CG5065 + chr2R 16617120 intron CG5065 + chr2R 16617182 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-395 1141 chr2R 16618700 16618744 chr2R 16618802 16618846 12 102 2.0 9.5 5.8 1.8 146 chr2R 16618700 intron CG5065 + chr2R 16618773 intron CG5065 + chr2R 16618846 5` UTR CG5065 + chr2R_12_16615001 chr2R_16615001 RAL-395 1142 chr2R 16708885 16708945 chr2R 16708987 16709048 20 102 1.5 6.5 4.0 4.0 163 chr2R 16708885 intron CG30463 - chr2R 16708966 intron CG30463 - chr2R 16709048 intron CG30463 - chr2R_20_16705001 chr2R_16705001 RAL-395 1143 chr2R 16732654 16732869 chr2R 16732767 16733064 10 187 11.5 43.0 27.2 0.4 410 chr2R 16732654 5` UTR CG30463 - chr2R 16732859 5` UTR CG30463 - chr2R 16733064 intergenic CG30463 - chr2R_10_16730001 chr2R_16730001 RAL-395 1144 chr2R 16732871 16732880 chr2R 16733067 16733076 4 196 8.5 13.5 11.0 0.3 205 chr2R 16732871 5` UTR CG30463 - chr2R 16732974 intergenic CG30463 - chr2R 16733076 intergenic CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-395 1145 chr2R 16737109 16737163 chr2R 16737235 16737289 38 125 9.5 8.0 8.8 3.9 180 chr2R 16737109 3` UTR CG43104 - chr2R 16737199 3` UTR CG43104 - chr2R 16737289 exon CG43104 - chr2R_38_16735001 chr2R_16735001 RAL-395 1146 chr2R 16885775 16885830 chr2R 16885879 16885934 31 101 5.5 8.0 6.8 4.0 159 chr2R 16885775 intron CG8910 - chr2R 16885854 intron CG8910 - chr2R 16885934 intron CG8910 - chr2R_31_16885001 chr2R_16885001 RAL-395 1147 chr2R 16893749 16893802 chr2R 16893858 16893911 33 107 8.5 7.5 8.0 3.7 162 chr2R 16893749 intron CG8910 - chr2R 16893830 intron CG8910 - chr2R 16893911 intron CG8910 - chr2R_33_16890001 chr2R_16890001 RAL-395 1148 chr2R 16975180 16975222 chr2R 16975283 16975325 14 103 2.5 4.5 3.5 3.1 145 chr2R 16975180 intron Cbp53E + chr2R 16975252 intron Cbp53E + chr2R 16975325 intron Cbp53E + chr2R_14_16975001 chr2R_16975001 RAL-395 1149 chr2R 16986216 16986271 chr2R 16986341 16986396 22 125 1.5 7.0 4.2 4.2 180 chr2R 16986216 intron Cbp53E + chr2R 16986306 intron Cbp53E + chr2R 16986396 intron Cbp53E + chr2R_22_16985001 chr2R_16985001 RAL-395 1150 chr2R 17077973 17077981 chr2R 17078076 17078076 4 101 5.5 0.5 3.0 1.0 103 chr2R 17077973 intron CG30460 - chr2R 17078024 intron CG30460 - chr2R 17078076 intron CG30460 - chr2R_4_17075001 chr2R_17075001 RAL-395 1151 chr2R 17139393 17139404 chr2R 17139559 17139570 6 166 6.0 9.5 7.8 0.7 177 chr2R 17139393 3` UTR CG11395 + chr2R 17139482 3` UTR,3` UTR CG11395 +,CG43103 - chr2R 17139570 3` UTR,3` UTR CG11395 +,CG43103 - chr2R_6_17135001 chr2R_17135001 RAL-395 1152 chr2R 17147219 17147264 chr2R 17152276 17152321 jockey 26 5057 14.5 12.0 13.2 1.8 5102 chr2R 17147219 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152321 intergenic not near genes chr2R_26_17145001 chr2R_17145001 RAL-395 1153 chr2R 17152689 17152742 chr2R 17152839 17152880 26 149 6.5 9.0 7.8 3.0 191 chr2R 17152689 intergenic not near genes chr2R 17152784 intergenic not near genes chr2R 17152880 intergenic not near genes chr2R_26_17150001 chr2R_17150001 RAL-395 1154 chr2R 17161329 17161343 chr2R 17161562 17161575 8 233 10.0 0.0 5.0 1.3 246 chr2R 17161329 intergenic CG30457 - chr2R 17161452 intergenic not near genes chr2R 17161575 intergenic not near genes chr2R_8_17160001 chr2R_17160001 RAL-395 1155 chr2R 17176353 17176386 chr2R 17182568 17182595 diver 21 6215 0.5 9.5 5.0 3.5 6242 chr2R 17176353 intergenic not near genes chr2R 17179474 intergenic not near genes chr2R 17182595 intergenic not near genes chr2R_21_17175001 chr2R_17175001 RAL-395 1156 chr2R 17233265 17233323 chr2R 17233391 17233448 30 125 5.5 9.0 7.2 3.7 183 chr2R 17233265 intron mbl + chr2R 17233356 intron mbl + chr2R 17233448 intron mbl + chr2R_30_17230001 chr2R_17230001 RAL-395 1157 chr2R 17236482 17236534 chr2R 17241712 17241764 copia 30 5230 10.0 12.0 11.0 2.5 5282 chr2R 17236482 intron mbl + chr2R 17239123 intron mbl + chr2R 17241764 intron mbl + chr2R_30_17235001 chr2R_17235001 RAL-395 1158 chr2R 17319111 17319139 chr2R 17319378 17319405 16 266 5.0 12.5 8.8 1.6 294 chr2R 17319111 intron mbl + chr2R 17319258 intron mbl + chr2R 17319405 intron mbl + chr2R_16_17315001 chr2R_17315001 RAL-395 1159 chr2R 17372250 17372303 chr2R 17372353 17372406 27 103 8.5 6.0 7.2 3.3 156 chr2R 17372250 intron mbl + chr2R 17372328 intron mbl + chr2R 17372406 intron mbl + chr2R_27_17370001 chr2R_17370001 RAL-395 1160 chr2R 17395274 17395317 chr2R 17395388 17395431 20 114 3.5 9.0 6.2 2.8 157 chr2R 17395274 intron Sip1 + chr2R 17395352 intron Sip1 + chr2R 17395431 intron Sip1 + chr2R_20_17395001 chr2R_17395001 RAL-395 1161 chr2R 17412335 17412389 chr2R 17412470 17412524 20 135 3.5 5.0 4.2 3.8 189 chr2R 17412335 intergenic Prosalpha5 + chr2R 17412430 intergenic Prosalpha5 + chr2R 17412524 intergenic Prosalpha5 + chr2R_20_17410001 chr2R_17410001 RAL-395 1162 chr2R 17419915 17419962 chr2R 17420021 17420066 8 100 2.5 4.5 3.5 1.8 151 chr2R 17419915 5` UTR cnk - chr2R 17419990 5` UTR cnk - chr2R 17420066 intergenic cnk -,l(2)k01209 + chr2R_8_17415001 chr2R_17415001 RAL-395 1163 chr2R 17442442 17442501 chr2R 17442562 17442621 30 120 3.0 0.0 1.5 12.0 179 chr2R 17442442 intron,3` UTR EDTP -,CG18467 + chr2R 17442532 intron EDTP - chr2R 17442621 intron EDTP - chr2R_30_17440001 chr2R_17440001 RAL-395 1164 chr2R 17443755 17443795 chr2R 17443857 17443897 9 102 5.5 5.0 5.2 1.5 142 chr2R 17443755 intron EDTP - chr2R 17443826 intron EDTP - chr2R 17443897 intron EDTP - chr2R_9_17440001 chr2R_17440001 RAL-395 1165 chr2R 17470330 17470354 chr2R 17470440 17470464 12 110 0.0 7.5 3.8 2.5 134 chr2R 17470330 intron qkr54B + chr2R 17470397 intron qkr54B + chr2R 17470464 intron qkr54B + chr2R_12_17470001 chr2R_17470001 RAL-395 1166 chr2R 17485890 17485953 chr2R 17490678 17490739 F-element 25 4787 5.5 5.0 5.2 4.0 4849 chr2R 17485890 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488314 intron NT5E-2 + chr2R 17490739 intron NT5E-2 + chr2R_25_17485001 chr2R_17485001 RAL-395 1167 chr2R 17703565 17703573 chr2R 17704034 17704042 4 469 12.5 15.5 14.0 0.3 477 chr2R 17703565 3` UTR CG6424 - chr2R 17703804 3` UTR CG6424 - chr2R 17704042 3` UTR CG6424 - chr2R_4_17700001 chr2R_17700001 RAL-395 1168 chr2R 17709958 17710014 chr2R 17710075 17710130 16 116 4.5 3.0 3.8 3.3 172 chr2R 17709958 intron CG6424 - chr2R 17710044 intron CG6424 - chr2R 17710130 intron CG6424 - chr2R_16_17710001 chr2R_17710001 RAL-395 1169 chr2R 17730633 17730667 chr2R 17730737 17730771 12 104 5.0 5.0 5.0 2.0 138 chr2R 17730633 intron,intron CG4975 +,CG4984 + chr2R 17730702 intron,intron CG4975 +,CG4984 + chr2R 17730771 intron,intron CG4975 +,CG4984 + chr2R_12_17730001 chr2R_17730001 RAL-395 1170 chr2R 17782351 17782391 chr2R 17783571 17783620 pogo 21 1228 4.0 6.0 5.0 3.5 1269 chr2R 17782351 intergenic CG33981 -,fab1 - chr2R 17782986 intergenic not near genes chr2R 17783620 intergenic mir-31a - chr2R_21_17780001 chr2R_17780001 RAL-395 1171 chr2R 17784007 17784056 chr2R 17784272 17784323 pogo 20 266 4.5 14.5 9.5 1.9 316 chr2R 17784007 intergenic mir-31a - chr2R 17784165 intergenic mir-31a - chr2R 17784323 intergenic mir-31a - chr2R_20_17780001 chr2R_17780001 RAL-395 1172 chr2R 17918142 17918191 chr2R 17918245 17918263 14 98 8.0 0.5 4.2 2.7 121 chr2R 17918142 intron Elk + chr2R 17918202 intron Elk + chr2R 17918263 intron Elk + chr2R_14_17915001 chr2R_17915001 RAL-395 1173 chr2R 17921414 17921452 chr2R 17921523 17921560 12 108 2.0 8.0 5.0 2.0 146 chr2R 17921414 intron Elk + chr2R 17921487 intron Elk + chr2R 17921560 intron Elk + chr2R_12_17920001 chr2R_17920001 RAL-395 1174 chr2R 17929136 17929144 chr2R 17929242 17929249 6 106 5.0 7.5 6.2 0.8 113 chr2R 17929136 intergenic not near genes chr2R 17929192 intergenic not near genes chr2R 17929249 intergenic not near genes chr2R_6_17925001 chr2R_17925001 RAL-395 1175 chr2R 17960124 17960173 chr2R 17960234 17960284 11 109 4.5 8.5 6.5 1.5 160 chr2R 17960124 intergenic not near genes chr2R 17960204 intergenic not near genes chr2R 17960284 intergenic not near genes chr2R_11_17960001 chr2R_17960001 RAL-395 1176 chr2R 17966123 17966174 chr2R 17966230 17966281 25 105 6.5 7.5 7.0 3.1 158 chr2R 17966123 intergenic not near genes chr2R 17966202 intergenic not near genes chr2R 17966281 intergenic not near genes chr2R_25_17965001 chr2R_17965001 RAL-395 1177 chr2R 17968154 17968209 chr2R 17968275 17968331 42 120 3.5 6.0 4.8 7.2 177 chr2R 17968154 intergenic not near genes chr2R 17968242 intergenic not near genes chr2R 17968331 intergenic not near genes chr2R_42_17965001 chr2R_17965001 RAL-395 1178 chr2R 17970243 17970299 chr2R 17970346 17970402 24 103 42.5 45.0 43.8 0.5 159 chr2R 17970243 intergenic not near genes chr2R 17970322 intergenic not near genes chr2R 17970402 intergenic not near genes chr2R_24_17970001 chr2R_17970001 RAL-395 1179 chr2R 17982899 17982953 chr2R 17983010 17983064 29 111 5.0 6.0 5.5 4.5 165 chr2R 17982899 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983064 intron dpr13 - chr2R_29_17980001 chr2R_17980001 RAL-395 1180 chr2R 17990744 17990800 chr2R 17990919 17990975 38 175 5.0 7.0 6.0 5.4 231 chr2R 17990744 intron dpr13 - chr2R 17990860 intron dpr13 - chr2R 17990975 intron dpr13 - chr2R_38_17990001 chr2R_17990001 RAL-395 1181 chr2R 18035387 18035436 chr2R 18035489 18035528 27 101 9.0 9.5 9.2 2.6 141 chr2R 18035387 intergenic not near genes chr2R 18035458 intergenic not near genes chr2R 18035528 intergenic not near genes chr2R_27_18035001 chr2R_18035001 RAL-395 1182 chr2R 18042813 18042997 chr2R 18042948 18043116 15 121 0.0 0.0 0.0 15.0 303 chr2R 18042813 3` UTR CG5773 - chr2R 18042964 3` UTR CG5773 - chr2R 18043116 exon CG5773 - chr2R_15_18040001 chr2R_18040001 RAL-395 1183 chr2R 18045647 18045697 chr2R 18046025 18046075 jockey 10 378 6.0 2.5 4.2 1.9 428 chr2R 18045647 intergenic not near genes chr2R 18045861 intergenic not near genes chr2R 18046075 intergenic CG5767 - chr2R_10_18045001 chr2R_18045001 RAL-395 1184 chr2R 18111654 18111707 chr2R 18115548 18115599 F-element 11 3892 4.0 0.0 2.0 3.7 3945 chr2R 18111654 intergenic not near genes chr2R 18113626 intergenic not near genes chr2R 18115599 intergenic not near genes chr2R_11_18110001 chr2R_18110001 RAL-395 1185 chr2R 18144818 18144875 chr2R 18144966 18145023 4 146 59.0 53.0 56.0 0.1 205 chr2R 18144818 exon pAbp + chr2R 18144920 intron pAbp + chr2R 18145023 exon pAbp + chr2R_4_18140001 chr2R_18140001 RAL-395 1186 chr2R 18185774 18185813 chr2R 18185882 18185921 19 108 11.5 11.5 11.5 1.5 147 chr2R 18185774 intron CG33958 - chr2R 18185848 intron CG33958 - chr2R 18185921 intron CG33958 - chr2R_19_18185001 chr2R_18185001 RAL-395 1187 chr2R 18197045 18197095 chr2R 18197149 18197198 11 102 8.5 5.5 7.0 1.4 153 chr2R 18197045 intergenic not near genes chr2R 18197122 intergenic not near genes chr2R 18197198 intergenic not near genes chr2R_11_18195001 chr2R_18195001 RAL-395 1188 chr2R 18268585 18268631 chr2R 18268692 18268739 9 108 3.5 9.5 6.5 1.2 154 chr2R 18268585 intergenic not near genes chr2R 18268662 intergenic not near genes chr2R 18268739 intergenic not near genes chr2R_9_18265001 chr2R_18265001 RAL-395 1189 chr2R 18308261 18308319 chr2R 18308388 18308451 26 131 6.0 5.5 5.8 3.8 190 chr2R 18308261 intron sbb - chr2R 18308356 intron sbb - chr2R 18308451 intron sbb - chr2R_26_18305001 chr2R_18305001 RAL-395 1190 chr2R 18322170 18322214 chr2R 18322279 18322324 19 107 8.0 11.0 9.5 1.8 154 chr2R 18322170 intron sbb - chr2R 18322247 intron sbb - chr2R 18322324 intron sbb - chr2R_19_18320001 chr2R_18320001 RAL-395 1191 chr2R 18358369 18358416 chr2R 18372607 18372654 roo 23 14238 4.0 8.0 6.0 3.3 14285 chr2R 18358369 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372654 intergenic not near genes chr2R_23_18365001 chr2R_18365001 RAL-395 1192 chr2R 18398136 18398192 chr2R 18398256 18398312 17 118 4.5 2.5 3.5 3.8 176 chr2R 18398136 intron GstE10 - chr2R 18398224 intron GstE10 - chr2R 18398312 intron GstE10 - chr2R_17_18395001 chr2R_18395001 RAL-395 1193 chr2R 18398661 18398661 chr2R 18399671 18399678 5 1011 46.0 42.5 44.2 0.1 1017 chr2R 18398661 exon GstE1 + chr2R 18399170 3` UTR GstE1 + chr2R 18399678 exon GstE2 + chr2R_5_18395001 chr2R_18395001 RAL-395 1194 chr2R 18405726 18405787 chr2R 18405833 18405893 16 106 5.0 1.5 3.2 3.8 167 chr2R 18405726 intergenic GstE6 +,GstE5 + chr2R 18405810 intergenic GstE6 +,GstE5 + chr2R 18405893 intergenic GstE6 + chr2R_16_18405001 chr2R_18405001 RAL-395 1195 chr2R 18408260 18408315 chr2R 18408406 18408461 34 145 15.0 8.5 11.8 2.7 201 chr2R 18408260 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408461 exon GstE8 + chr2R_34_18405001 chr2R_18405001 RAL-395 1196 chr2R 18477740 18477762 chr2R 18477822 18477858 21 103 0.0 10.5 5.2 3.4 118 chr2R 18477740 intron CG30116 - chr2R 18477799 intron CG30116 - chr2R 18477858 intron CG30116 - chr2R_21_18475001 chr2R_18475001 RAL-395 1197 chr2R 18486197 18486229 chr2R 18486462 18486494 9 265 8.5 9.5 9.0 0.9 297 chr2R 18486197 intron CG30116 - chr2R 18486346 intron CG30116 - chr2R 18486494 intron CG30116 - chr2R_9_18485001 chr2R_18485001 RAL-395 1198 chr2R 18487812 18487849 chr2R 18495289 18495345 blood 5 7481 0.5 8.0 4.2 1.0 7533 chr2R 18487812 intron CG30116 - chr2R 18491578 intron CG30116 - chr2R 18495345 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-395 1199 chr2R 18500522 18500578 chr2R 18500636 18500692 25 113 8.5 8.0 8.2 2.7 170 chr2R 18500522 intergenic not near genes chr2R 18500607 intergenic not near genes chr2R 18500692 intergenic not near genes chr2R_25_18500001 chr2R_18500001 RAL-395 1200 chr2R 18528166 18528217 chr2R 18528277 18528328 30 110 7.5 9.0 8.2 3.3 162 chr2R 18528166 intron CG10924 + chr2R 18528247 intron CG10924 + chr2R 18528328 intron CG10924 + chr2R_30_18525001 chr2R_18525001 RAL-395 1201 chr2R 18575769 18575830 chr2R 18581983 18582044 3S18 31 6213 7.5 10.0 8.8 3.2 6275 chr2R 18575769 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582044 intron GEFmeso - chr2R_31_18575001 chr2R_18575001 RAL-395 1202 chr2R 18590845 18590901 chr2R 18600023 18600079 roo 29 9178 7.0 5.5 6.2 4.0 9234 chr2R 18590845 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600079 intron GEFmeso - chr2R_29_18595001 chr2R_18595001 RAL-395 1203 chr2R 18675158 18675169 chr2R 18675262 18675273 7 104 0.5 17.0 8.8 0.7 115 chr2R 18675158 intergenic not near genes chr2R 18675216 intergenic not near genes chr2R 18675273 intergenic not near genes chr2R_7_18675001 chr2R_18675001 RAL-395 1204 chr2R 18715179 18715235 chr2R 18715284 18715340 29 104 10.0 9.5 9.8 2.7 161 chr2R 18715179 intergenic not near genes chr2R 18715260 intergenic not near genes chr2R 18715340 intergenic not near genes chr2R_29_18715001 chr2R_18715001 RAL-395 1205 chr2R 18727911 18727966 chr2R 18728593 18728648 22 681 6.5 4.5 5.5 3.4 737 chr2R 18727911 intron,3` UTR Hs3st-A +,List - chr2R 18728280 intron,exon Hs3st-A +,List - chr2R 18728648 intron,exon Hs3st-A +,List - chr2R_22_18725001 chr2R_18725001 RAL-395 1206 chr2R 18732324 18732335 chr2R 18732482 18732492 4 158 13.5 6.5 10.0 0.4 168 chr2R 18732324 intron Hs3st-A + chr2R 18732408 intron Hs3st-A + chr2R 18732492 intron Hs3st-A + chr2R_4_18730001 chr2R_18730001 RAL-395 1207 chr2R 18732336 18732372 chr2R 18732481 18732532 14 154 6.0 6.5 6.2 1.9 196 chr2R 18732336 intron Hs3st-A + chr2R 18732434 intron Hs3st-A + chr2R 18732532 intron Hs3st-A + chr2R_14_18730001 chr2R_18730001 RAL-395 1208 chr2R 18778585 18778607 chr2R 18778709 18778731 11 124 7.5 0.0 3.8 2.3 146 chr2R 18778585 intergenic not near genes chr2R 18778658 intergenic not near genes chr2R 18778731 intergenic not near genes chr2R_11_18775001 chr2R_18775001 RAL-395 1209 chr2R 18785891 18785945 chr2R 18785993 18786050 33 105 10.0 11.0 10.5 2.9 159 chr2R 18785891 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786050 intron CG15080 + chr2R_33_18785001 chr2R_18785001 RAL-395 1210 chr2R 18808057 18808073 chr2R 18808172 18808187 9 115 0.0 0.0 0.0 9.0 130 chr2R 18808057 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808187 intergenic CG15096 - chr2R_9_18805001 chr2R_18805001 RAL-395 1211 chr2R 18827688 18827723 chr2R 18827794 18827829 8 106 0.0 7.0 3.5 1.8 141 chr2R 18827688 intron CG15097 - chr2R 18827758 intron CG15097 - chr2R 18827829 intron CG15097 - chr2R_8_18825001 chr2R_18825001 RAL-395 1212 chr2R 18862290 18862407 chr2R 18862402 18862518 6 122 0.0 0.0 0.0 6.0 228 chr2R 18862290 intergenic Jheh3 - chr2R 18862404 intergenic Jheh3 -,CG43069 + chr2R 18862518 intergenic CG43069 +,Jheh3 - chr2R_6_18860001 chr2R_18860001 RAL-395 1213 chr2R 18885681 18885727 chr2R 18886182 18886228 16 501 14.0 8.0 11.0 1.3 547 chr2R 18885681 intron sano + chr2R 18885954 intron sano + chr2R 18886228 intron sano + chr2R_16_18885001 chr2R_18885001 RAL-395 1214 chr2R 18924263 18924295 chr2R 18924365 18924401 17 105 11.0 16.0 13.5 1.2 138 chr2R 18924263 intron sano + chr2R 18924332 intron sano + chr2R 18924401 intron sano + chr2R_17_18920001 chr2R_18920001 RAL-395 1215 chr2R 18928657 18928669 chr2R 18928770 18928782 8 113 14.5 7.5 11.0 0.7 125 chr2R 18928657 intron sano + chr2R 18928720 intron sano + chr2R 18928782 intron sano + chr2R_8_18925001 chr2R_18925001 RAL-395 1216 chr2R 18928673 18928701 chr2R 18928769 18928813 17 108 7.0 7.5 7.2 2.1 140 chr2R 18928673 intron sano + chr2R 18928743 intron sano + chr2R 18928813 intron sano + chr2R_17_18925001 chr2R_18925001 RAL-395 1217 chr2R 18930425 18930485 chr2R 18930544 18930601 25 119 4.0 4.0 4.0 5.0 176 chr2R 18930425 intron sano + chr2R 18930513 intron sano + chr2R 18930601 intron sano + chr2R_25_18930001 chr2R_18930001 RAL-395 1218 chr2R 18950120 18950127 chr2R 18950252 18950259 4 132 5.5 3.0 4.2 0.8 139 chr2R 18950120 intron sano + chr2R 18950190 intron sano + chr2R 18950259 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-395 1219 chr2R 18953132 18953189 chr2R 18953245 18953302 22 113 6.5 3.0 4.8 3.8 170 chr2R 18953132 intron sano + chr2R 18953217 intron sano + chr2R 18953302 intron sano + chr2R_22_18950001 chr2R_18950001 RAL-395 1220 chr2R 18984440 18984494 chr2R 18984725 18984779 21 285 10.5 5.5 8.0 2.3 339 chr2R 18984440 intergenic not near genes chr2R 18984610 intergenic not near genes chr2R 18984779 intergenic not near genes chr2R_21_18980001 chr2R_18980001 RAL-395 1221 chr2R 18991994 18992050 chr2R 18992161 18992217 38 166 7.5 9.0 8.2 4.1 223 chr2R 18991994 intron tn + chr2R 18992106 intron tn + chr2R 18992217 intron tn + chr2R_38_18990001 chr2R_18990001 RAL-395 1222 chr2R 19015410 19015459 chr2R 19015523 19015573 31 114 10.0 10.0 10.0 2.8 163 chr2R 19015410 intergenic not near genes chr2R 19015492 intergenic not near genes chr2R 19015573 intergenic not near genes chr2R_31_19015001 chr2R_19015001 RAL-395 1223 chr2R 19025281 19025326 chr2R 19025539 19025586 20 260 0.0 6.0 3.0 5.0 305 chr2R 19025281 intron 5-HT1B - chr2R 19025434 intron 5-HT1B - chr2R 19025586 intron 5-HT1B - chr2R_20_19025001 chr2R_19025001 RAL-395 1224 chr2R 19026020 19026057 chr2R 19026186 19026205 24 164 19.0 6.5 12.8 1.7 185 chr2R 19026020 intron 5-HT1B - chr2R 19026112 intron 5-HT1B - chr2R 19026205 intron 5-HT1B - chr2R_24_19025001 chr2R_19025001 RAL-395 1225 chr2R 19042669 19042683 chr2R 19042780 19042794 15 110 18.0 18.5 18.2 0.8 125 chr2R 19042669 intergenic not near genes chr2R 19042732 intergenic not near genes chr2R 19042794 intergenic not near genes chr2R_15_19040001 chr2R_19040001 RAL-395 1226 chr2R 19042685 19042697 chr2R 19042779 19042808 11 108 15.5 18.5 17.0 0.6 123 chr2R 19042685 intergenic not near genes chr2R 19042746 intergenic not near genes chr2R 19042808 intergenic not near genes chr2R_11_19040001 chr2R_19040001 RAL-395 1227 chr2R 19082823 19082875 chr2R 19082946 19082997 18 123 2.5 9.0 5.8 2.6 174 chr2R 19082823 intron 5-HT1A + chr2R 19082910 intron 5-HT1A + chr2R 19082997 intron 5-HT1A + chr2R_18_19080001 chr2R_19080001 RAL-395 1228 chr2R 19175477 19175505 chr2R 19175593 19175621 12 116 6.5 4.0 5.2 1.9 144 chr2R 19175477 intron CG10737 + chr2R 19175549 intron CG10737 + chr2R 19175621 intron CG10737 + chr2R_12_19175001 chr2R_19175001 RAL-395 1229 chr2R 19203322 19203361 chr2R 19203712 19203751 19 391 51.0 72.5 61.8 0.3 429 chr2R 19203322 intron hppy + chr2R 19203536 intron hppy + chr2R 19203751 intron hppy + chr2R_19_19200001 chr2R_19200001 RAL-395 1230 chr2R 19385267 19385304 chr2R 19385576 19385613 12 309 4.5 7.0 5.8 1.8 346 chr2R 19385267 intergenic CG10073 + chr2R 19385440 intergenic CG10073 +,CG10081 + chr2R 19385613 intergenic CG10081 + chr2R_12_19385001 chr2R_19385001 RAL-395 1231 chr2R 19412343 19412402 chr2R 19412721 19412780 31 378 4.5 5.5 5.0 5.2 437 chr2R 19412343 intron hts - chr2R 19412562 intron hts - chr2R 19412780 intron hts - chr2R_31_19410001 chr2R_19410001 RAL-395 1232 chr2R 19498449 19498503 chr2R 19498552 19498606 11 103 0.5 6.5 3.5 2.4 157 chr2R 19498449 intron CG15120 + chr2R 19498528 intron CG15120 + chr2R 19498606 intron CG15120 + chr2R_11_19495001 chr2R_19495001 RAL-395 1233 chr2R 19569132 19569183 chr2R 19569234 19569285 29 102 6.5 9.0 7.8 3.3 153 chr2R 19569132 intron sm - chr2R 19569208 intron sm - chr2R 19569285 intron sm - chr2R_29_19565001 chr2R_19565001 RAL-395 1234 chr2R 19588724 19588782 chr2R 19588828 19588886 24 104 6.0 6.0 6.0 3.4 162 chr2R 19588724 intron sm - chr2R 19588805 intron sm - chr2R 19588886 intron sm - chr2R_24_19585001 chr2R_19585001 RAL-395 1235 chr2R 19601243 19601293 chr2R 19601359 19601409 25 116 6.0 6.0 6.0 3.6 166 chr2R 19601243 intron sm - chr2R 19601326 intron sm - chr2R 19601409 intron sm - chr2R_25_19600001 chr2R_19600001 RAL-395 1236 chr2R 19715830 19715857 chr2R 19723325 19723352 blood 12 7495 14.0 10.5 12.2 0.9 7522 chr2R 19715830 intergenic not near genes chr2R 19719591 intergenic not near genes chr2R 19723352 intergenic not near genes chr2R_12_19715001 chr2R_19715001 RAL-395 1237 chr2R 19773985 19774037 chr2R 19774124 19774172 20 138 6.5 4.0 5.2 3.2 187 chr2R 19773985 intergenic not near genes chr2R 19774078 intergenic not near genes chr2R 19774172 intergenic not near genes chr2R_20_19770001 chr2R_19770001 RAL-395 1238 chr2R 19776568 19776622 chr2R 19779917 19779963 jockey 25 3347 6.5 8.5 7.5 2.9 3395 chr2R 19776568 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779963 intergenic not near genes chr2R_25_19775001 chr2R_19775001 RAL-395 1239 chr2R 19807644 19807702 chr2R 19807752 19807809 17 108 5.0 2.0 3.5 3.8 165 chr2R 19807644 intergenic not near genes chr2R 19807726 intergenic not near genes chr2R 19807809 intergenic not near genes chr2R_17_19805001 chr2R_19805001 RAL-395 1240 chr2R 19869761 19869815 chr2R 19869867 19869921 25 105 6.0 11.5 8.8 2.6 160 chr2R 19869761 intergenic CR44460 + chr2R 19869841 intergenic CR44460 + chr2R 19869921 intergenic CR44460 + chr2R_25_19865001 chr2R_19865001 RAL-395 1241 chr2R 19914823 19914878 chr2R 19922261 19922316 mdg1 14 7438 7.5 9.5 8.5 1.5 7493 chr2R 19914823 intergenic not near genes chr2R 19918570 intergenic not near genes chr2R 19922316 intergenic not near genes chr2R_14_19915001 chr2R_19915001 RAL-395 1242 chr2R 19957406 19957461 chr2R 19962633 19962689 copia 30 5226 9.0 7.5 8.2 3.3 5283 chr2R 19957406 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962689 intergenic not near genes chr2R_30_19960001 chr2R_19960001 RAL-395 1243 chr2R 20069208 20069255 chr2R 20071873 20071919 opus 16 2661 0.0 6.0 3.0 4.0 2711 chr2R 20069208 intergenic not near genes chr2R 20070564 intergenic not near genes chr2R 20071919 intergenic not near genes chr2R_16_20070001 chr2R_20070001 RAL-395 1244 chr2R 20080426 20080456 chr2R 20080532 20080553 14 106 7.5 5.0 6.2 1.9 127 chr2R 20080426 intergenic not near genes chr2R 20080490 intergenic not near genes chr2R 20080553 intergenic not near genes chr2R_14_20080001 chr2R_20080001 RAL-395 1245 chr2R 20080457 20080472 chr2R 20080531 20080579 10 99 4.0 4.0 4.0 2.0 122 chr2R 20080457 intergenic not near genes chr2R 20080518 intergenic not near genes chr2R 20080579 intergenic not near genes chr2R_10_20080001 chr2R_20080001 RAL-395 1246 chr2R 20088004 20088025 chr2R 20088137 20088159 1360 6 134 7.0 7.0 7.0 0.8 155 chr2R 20088004 intergenic not near genes chr2R 20088082 intergenic not near genes chr2R 20088159 intergenic not near genes chr2R_6_20085001 chr2R_20085001 RAL-395 1247 chr2R 20125726 20125742 chr2R 20125828 20125844 10 102 2.0 9.5 5.8 1.5 118 chr2R 20125726 intergenic not near genes chr2R 20125785 intergenic not near genes chr2R 20125844 intergenic not near genes chr2R_10_20125001 chr2R_20125001 RAL-395 1248 chr2R 20125744 20125749 chr2R 20125811 20125851 6 96 1.5 7.0 4.2 1.2 107 chr2R 20125744 intergenic not near genes chr2R 20125798 intergenic not near genes chr2R 20125851 intergenic not near genes chr2R_6_20125001 chr2R_20125001 RAL-395 1249 chr2R 20220777 20220829 chr2R 20221320 20221372 27 540 10.0 4.5 7.2 3.3 595 chr2R 20220777 intergenic not near genes chr2R 20221074 intergenic CR45423 - chr2R 20221372 intergenic CR45423 - chr2R_27_20220001 chr2R_20220001 RAL-395 1250 chr2R 20223928 20223983 chr2R 20224039 20224094 17 110 8.5 4.0 6.2 2.4 166 chr2R 20223928 intergenic not near genes chr2R 20224011 intergenic not near genes chr2R 20224094 intergenic not near genes chr2R_17_20220001 chr2R_20220001 RAL-395 1251 chr2R 20226139 20226145 chr2R 20226254 20226260 4 115 9.5 0.0 4.8 0.7 121 chr2R 20226139 intergenic not near genes chr2R 20226200 intergenic not near genes chr2R 20226260 intergenic not near genes chr2R_4_20225001 chr2R_20225001 RAL-395 1252 chr2R 20395001 20395058 chr2R 20395199 20395260 14 201 4.5 0.0 2.2 4.4 259 chr2R 20395001 intergenic not near genes chr2R 20395130 intergenic not near genes chr2R 20395260 intergenic not near genes chr2R_14_20395001 chr2R_20395001 RAL-395 1253 chr2R 20506183 20506240 chr2R 20506315 20506372 29 131 7.5 10.0 8.8 3.0 189 chr2R 20506183 3` UTR CR44644 - chr2R 20506278 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506372 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_29_20505001 chr2R_20505001 RAL-395 1254 chr2R 20511838 20511896 chr2R 20512575 20512633 35 735 11.0 12.5 11.8 2.7 795 chr2R 20511838 intergenic CR44649 +,CR44648 + chr2R 20512236 intergenic CR44649 +,CG13426 - chr2R 20512633 intergenic CG13426 - chr2R_35_20510001 chr2R_20510001 RAL-395 1255 chr2R 20523014 20523068 chr2R 20523151 20523205 34 136 7.0 8.0 7.5 4.0 191 chr2R 20523014 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523205 intergenic not near genes chr2R_34_20520001 chr2R_20520001 RAL-395 1256 chr2R 20533894 20533907 chr2R 20534042 20534055 8 148 0.0 1.5 0.8 4.4 161 chr2R 20533894 3` UTR CG30154 + chr2R 20533974 intergenic CG30154 +,CG18067 + chr2R 20534055 intergenic CG30154 +,CG18067 + chr2R_8_20530001 chr2R_20530001 RAL-395 1257 chr2R 20555315 20555361 chr2R 20555433 20555478 14 118 4.5 8.5 6.5 1.9 163 chr2R 20555315 intergenic not near genes chr2R 20555396 intergenic not near genes chr2R 20555478 intergenic not near genes chr2R_14_20555001 chr2R_20555001 RAL-395 1258 chr2R 20572545 20572582 chr2R 20572661 20572696 8 115 4.5 6.5 5.5 1.2 151 chr2R 20572545 intron qsm - chr2R 20572620 intron qsm - chr2R 20572696 intron qsm - chr2R_8_20570001 chr2R_20570001 RAL-395 1259 chr2R 20578626 20578683 chr2R 20578740 20578798 32 115 8.5 7.0 7.8 3.6 172 chr2R 20578626 intron qsm - chr2R 20578712 intron qsm - chr2R 20578798 intron qsm - chr2R_32_20575001 chr2R_20575001 RAL-395 1260 chr2R 20590647 20590650 chr2R 20590752 20590755 4 105 14.5 9.5 12.0 0.3 108 chr2R 20590647 intron bl + chr2R 20590701 intron bl + chr2R 20590755 intron bl + chr2R_4_20590001 chr2R_20590001 RAL-395 1261 chr2R 20601695 20601755 chr2R 20601806 20601852 17 110 6.0 12.0 9.0 1.7 157 chr2R 20601695 intron bl + chr2R 20601774 intron bl + chr2R 20601852 intron bl + chr2R_17_20600001 chr2R_20600001 RAL-395 1262 chr2R 20667340 20667349 chr2R 20667478 20667482 6 137 23.0 25.0 24.0 0.2 142 chr2R 20667340 intergenic Fem-1 -,exu - chr2R 20667411 intergenic exu -,Fem-1 - chr2R 20667482 3` UTR exu - chr2R_6_20665001 chr2R_20665001 RAL-395 1263 chr2R 20707938 20707970 chr2R 20708047 20708079 13 108 8.5 8.0 8.2 1.4 141 chr2R 20707938 intron dpr + chr2R 20708008 intron dpr + chr2R 20708079 intron dpr + chr2R_13_20705001 chr2R_20705001 RAL-395 1264 chr2R 20739416 20739469 chr2R 20744210 20744244 F-element 29 4793 9.5 7.5 8.5 3.1 4828 chr2R 20739416 intron dpr + chr2R 20741830 intron dpr + chr2R 20744244 intron dpr + chr2R_29_20740001 chr2R_20740001 RAL-395 1265 chr2R 20757443 20757458 chr2R 20757546 20757561 16 102 5.0 16.0 10.5 1.4 118 chr2R 20757443 intergenic not near genes chr2R 20757502 intergenic not near genes chr2R 20757561 intergenic not near genes chr2R_16_20755001 chr2R_20755001 RAL-395 1266 chr2R 20759797 20759813 chr2R 20759899 20759915 17 102 0.0 18.5 9.2 1.7 118 chr2R 20759797 intergenic not near genes chr2R 20759856 intergenic not near genes chr2R 20759915 intergenic not near genes chr2R_17_20755001 chr2R_20755001 RAL-395 1267 chr2R 20783285 20783330 chr2R 20788083 20788112 F-element 19 4797 11.5 15.5 13.5 1.3 4827 chr2R 20783285 intergenic not near genes chr2R 20785698 intergenic not near genes chr2R 20788112 intergenic CG43666 - chr2R_19_20785001 chr2R_20785001 RAL-395 1268 chr2R 20811990 20812040 chr2R 20812102 20812154 35 112 11.0 12.5 11.8 2.7 164 chr2R 20811990 intergenic not near genes chr2R 20812072 intergenic not near genes chr2R 20812154 intergenic not near genes chr2R_35_20810001 chr2R_20810001 RAL-395 1269 chr2R 20826937 20826987 chr2R 20827057 20827113 16 124 4.0 6.5 5.2 2.6 176 chr2R 20826937 intron insc - chr2R 20827025 intron insc - chr2R 20827113 intron insc - chr2R_16_20825001 chr2R_20825001 RAL-395 1270 chr2R 20927702 20927743 chr2R 20927806 20927841 34 102 8.0 10.0 9.0 3.4 139 chr2R 20927702 intron Rx + chr2R 20927772 intron Rx + chr2R 20927841 intron Rx + chr2R_34_20925001 chr2R_20925001 RAL-395 1271 chr2R 20938080 20938109 chr2R 20938182 20938212 13 103 0.0 5.0 2.5 3.7 132 chr2R 20938080 intergenic not near genes chr2R 20938146 intergenic not near genes chr2R 20938212 intergenic not near genes chr2R_13_20935001 chr2R_20935001 RAL-395 1272 chr2R 20942350 20942373 chr2R 20942459 20942482 7 109 0.0 4.5 2.2 2.2 132 chr2R 20942350 intergenic not near genes chr2R 20942416 intergenic not near genes chr2R 20942482 intergenic not near genes chr2R_7_20940001 chr2R_20940001 RAL-395 1273 chr2R 20962883 20962939 chr2R 20963007 20963063 45 123 5.5 9.0 7.2 5.5 180 chr2R 20962883 intergenic not near genes chr2R 20962973 intergenic not near genes chr2R 20963063 intergenic not near genes chr2R_45_20960001 chr2R_20960001 RAL-395 1274 chr2R 20967001 20967047 chr2R 20967104 20967150 14 102 8.0 0.0 4.0 2.8 149 chr2R 20967001 intergenic not near genes chr2R 20967076 intergenic not near genes chr2R 20967150 intergenic not near genes chr2R_14_20965001 chr2R_20965001 RAL-395 1275 chr2R 21080285 21080295 chr2R 21080387 21080399 16 104 17.5 10.5 14.0 1.1 114 chr2R 21080285 intron Treh + chr2R 21080342 intron Treh + chr2R 21080399 intron Treh + chr2R_16_21080001 chr2R_21080001 RAL-395 1276 chr2R 21077720 21077737 chr2R 21082940 21082947 5 5212 24.5 64.0 44.2 0.1 5227 chr2R 21077720 intron Treh + chr2R 21080334 intron Treh + chr2R 21082947 intron Treh + chr2R_5_21080001 chr2R_21080001 RAL-395 1277 chr2R 21103515 21103553 chr2R 21103621 21103659 21 106 8.0 0.0 4.0 4.2 144 chr2R 21103515 intron ktub + chr2R 21103587 intron ktub + chr2R 21103659 intron ktub + chr2R_21_21100001 chr2R_21100001 RAL-395 1278 chr2R 21113455 21113483 chr2R 21113570 21113598 19 114 11.5 9.0 10.2 1.7 143 chr2R 21113455 intron ktub + chr2R 21113526 intron ktub + chr2R 21113598 intron ktub + chr2R_19_21110001 chr2R_21110001 RAL-395 1279 chr2R 21136871 21136916 chr2R 21136981 21137026 21 110 3.0 7.0 5.0 3.5 155 chr2R 21136871 intron Magi - chr2R 21136948 intron Magi - chr2R 21137026 intron Magi - chr2R_21_21135001 chr2R_21135001 RAL-395 1280 chr2R 21151093 21151144 chr2R 21153752 21153803 opus 24 2659 10.0 9.0 9.5 2.3 2710 chr2R 21151093 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153803 intron CG30389 - chr2R_24_21150001 chr2R_21150001 RAL-395 1281 chr2R 21188228 21188250 chr2R 21188335 21188357 6 107 7.5 15.5 11.5 0.5 129 chr2R 21188228 exon tud + chr2R 21188292 intron tud + chr2R 21188357 intron tud + chr2R_6_21185001 chr2R_21185001 RAL-395 1282 chr2R 21232620 21232660 chr2R 21232816 21232856 11 195 14.0 0.5 7.2 1.3 236 chr2R 21232620 intron ASPP - chr2R 21232738 intron ASPP - chr2R 21232856 intron ASPP - chr2R_11_21230001 chr2R_21230001 RAL-395 1283 chr2R 21251793 21251852 chr2R 21252046 21252105 19 252 3.5 5.0 4.2 3.7 312 chr2R 21251793 intergenic not near genes chr2R 21251949 intergenic not near genes chr2R 21252105 intergenic not near genes chr2R_19_21250001 chr2R_21250001 RAL-395 1284 chr2R 21258457 21258467 chr2R 21258561 21258571 10 104 0.0 19.0 9.5 1.0 114 chr2R 21258457 intron Rgk3 + chr2R 21258514 intron Rgk3 + chr2R 21258571 intron Rgk3 + chr2R_10_21255001 chr2R_21255001 RAL-395 1285 chr2R 13082301 13082301 chr2R 21260748 21260763 5 8178456 41.5 81.5 61.5 0.1 8178462 chr2R 13082301 intergenic not near genes chr2R 17171532 intergenic not near genes chr2R 21260763 intron Rgk3 + chr2R_5_17170001 chr2R_17170001 RAL-395 1286 chr2R 21262067 21262129 chr2R 21262413 21262473 30 343 30.0 40.0 35.0 0.8 406 chr2R 21262067 intron Rgk3 + chr2R 21262270 intron Rgk3 + chr2R 21262473 intron Rgk3 + chr2R_30_21260001 chr2R_21260001 RAL-395 1287 chr2R 21258454 21258467 chr2R 21262867 21262880 10 4413 0.0 65.5 32.8 0.3 4426 chr2R 21258454 intron Rgk3 + chr2R 21260667 intron Rgk3 + chr2R 21262880 intron Rgk3 + chr2R_10_21260001 chr2R_21260001 RAL-395 1288 chr2R 21380160 21380209 chr2R 21380345 21380394 30 185 9.0 7.0 8.0 3.3 234 chr2R 21380160 intergenic not near genes chr2R 21380277 intergenic not near genes chr2R 21380394 intergenic not near genes chr2R_30_21380001 chr2R_21380001 RAL-395 1289 chr2R 21417220 21417265 chr2R 21417430 21417476 5 211 5.0 0.0 2.5 1.4 256 chr2R 21417220 intron Sdc - chr2R 21417348 intron Sdc - chr2R 21417476 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-395 1290 chr2R 21467506 21467522 chr2R 21467619 21467635 9 113 17.0 3.0 10.0 0.8 129 chr2R 21467506 intron Sdc - chr2R 21467570 intron Sdc - chr2R 21467635 intron Sdc - chr2R_9_21465001 chr2R_21465001 RAL-395 1291 chr2R 21469922 21469968 chr2R 21470036 21470081 8 113 6.5 5.0 5.8 1.2 159 chr2R 21469922 intron Sdc - chr2R 21470002 intron Sdc - chr2R 21470081 intron Sdc - chr2R_8_21470001 chr2R_21470001 RAL-395 1292 chr2R 21507180 21507238 chr2R 21507282 21507340 22 101 3.0 9.5 6.2 3.1 160 chr2R 21507180 intron MESK2 + chr2R 21507260 intron MESK2 + chr2R 21507340 intron MESK2 + chr2R_22_21505001 chr2R_21505001 RAL-395 1293 chr2R 21515425 21515430 chr2R 21515540 21515544 4 115 7.0 21.0 14.0 0.3 119 chr2R 21515425 intron MESK2 + chr2R 21515484 intron MESK2 + chr2R 21515544 intron MESK2 + chr2R_4_21515001 chr2R_21515001 RAL-395 1294 chr2R 21534083 21534137 chr2R 21534196 21534250 32 112 12.0 9.5 10.8 2.7 167 chr2R 21534083 intron Egfr + chr2R 21534166 intron Egfr + chr2R 21534250 intron Egfr + chr2R_32_21530001 chr2R_21530001 RAL-395 1295 chr2R 21535833 21535883 chr2R 21536021 21536072 32 188 6.5 10.5 8.5 3.4 239 chr2R 21535833 intron,exon Egfr +,CG30286 - chr2R 21535952 intron,exon Egfr +,CG30286 - chr2R 21536072 intron,exon Egfr +,CG30286 - chr2R_32_21535001 chr2R_21535001 RAL-395 1296 chr2R 21540665 21540697 chr2R 21540909 21540941 13 244 7.5 2.5 5.0 2.2 276 chr2R 21540665 intron Egfr + chr2R 21540803 intron Egfr + chr2R 21540941 intron Egfr + chr2R_13_21540001 chr2R_21540001 RAL-395 1297 chr2R 21546761 21546820 chr2R 21546868 21546888 26 100 8.5 10.0 9.2 2.5 127 chr2R 21546761 intron Egfr + chr2R 21546824 intron Egfr + chr2R 21546888 intron Egfr + chr2R_26_21545001 chr2R_21545001 RAL-395 1298 chr2R 21592819 21592853 chr2R 21592928 21592959 19 108 18.0 12.5 15.2 1.2 140 chr2R 21592819 intergenic not near genes chr2R 21592889 intergenic not near genes chr2R 21592959 intergenic not near genes chr2R_19_21590001 chr2R_21590001 RAL-395 1299 chr2R 21595056 21595063 chr2R 21595162 21595169 5 106 18.5 0.0 9.2 0.5 113 chr2R 21595056 intergenic not near genes chr2R 21595112 intergenic not near genes chr2R 21595169 intergenic not near genes chr2R_5_21595001 chr2R_21595001 RAL-395 1300 chr2R 21725204 21725220 chr2R 21725307 21725323 9 102 0.5 9.5 5.0 1.5 119 chr2R 21725204 intergenic not near genes chr2R 21725264 intergenic not near genes chr2R 21725323 intergenic not near genes chr2R_9_21725001 chr2R_21725001 RAL-395 1301 chr2R 21726675 21726680 chr2R 21726799 21726804 4 124 12.0 0.0 6.0 0.6 129 chr2R 21726675 intergenic not near genes chr2R 21726740 intergenic not near genes chr2R 21726804 intergenic not near genes chr2R_4_21725001 chr2R_21725001 RAL-395 1302 chr2R 21738256 21738311 chr2R 21747442 21747455 roo 21 9181 9.5 11.5 10.5 1.8 9199 chr2R 21738256 intergenic not near genes chr2R 21742856 intergenic not near genes chr2R 21747455 intergenic not near genes chr2R_21_21740001 chr2R_21740001 RAL-395 1303 chr2R 21753059 21753064 chr2R 21753570 21753574 roo 7 511 28.0 13.0 20.5 0.3 515 chr2R 21753059 intergenic not near genes chr2R 21753316 intergenic not near genes chr2R 21753574 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-395 1304 chr2R 21753065 21753111 chr2R 21753567 21753622 roo 27 510 16.5 12.0 14.2 1.8 557 chr2R 21753065 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753622 intergenic not near genes chr2R_27_21750001 chr2R_21750001 RAL-395 1305 chr2R 21774754 21774760 chr2R 22652327 22652333 5 877573 16.5 2.0 9.2 0.5 877579 chr2R 21774754 3` UTR CG4021 + chr2R 22213544 intron ari-2 + chr2R 22652333 3` UTR nsr + chr2R_5_22210001 chr2R_22210001 RAL-395 1306 chr2R 21809508 21809549 chr2R 21817774 21817815 roo 19 8265 10.0 9.5 9.8 1.8 8307 chr2R 21809508 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817815 intergenic not near genes chr2R_19_21810001 chr2R_21810001 RAL-395 1307 chr2R 21870930 21870971 chr2R 21871034 21871076 10 105 0.0 9.0 4.5 1.8 146 chr2R 21870930 intergenic not near genes chr2R 21871003 intergenic not near genes chr2R 21871076 intergenic not near genes chr2R_10_21870001 chr2R_21870001 RAL-395 1308 chr2R 21880583 21880638 chr2R 21880708 21880763 35 125 7.0 9.5 8.2 3.8 180 chr2R 21880583 intron Fili + chr2R 21880673 intron Fili + chr2R 21880763 intron Fili + chr2R_35_21880001 chr2R_21880001 RAL-395 1309 chr2R 21888283 21888321 chr2R 21888406 21888444 22 123 6.0 5.0 5.5 3.4 161 chr2R 21888283 intron Fili + chr2R 21888364 intron Fili + chr2R 21888444 intron Fili + chr2R_22_21885001 chr2R_21885001 RAL-395 1310 chr2R 21920914 21920920 chr2R 21921017 21921024 5 103 13.5 6.0 9.8 0.5 110 chr2R 21920914 intron Fili + chr2R 21920969 intron Fili + chr2R 21921024 intron Fili + chr2R_5_21920001 chr2R_21920001 RAL-395 1311 chr2R 21932227 21932279 chr2R 21932326 21932382 30 103 7.5 9.0 8.2 3.3 155 chr2R 21932227 intron Fili + chr2R 21932304 intron Fili + chr2R 21932382 intron Fili + chr2R_30_21930001 chr2R_21930001 RAL-395 1312 chr2R 21956269 21956322 chr2R 21956374 21956427 36 103 11.0 5.0 8.0 4.0 158 chr2R 21956269 intergenic not near genes chr2R 21956348 intergenic not near genes chr2R 21956427 intergenic not near genes chr2R_36_21955001 chr2R_21955001 RAL-395 1313 chr2R 21997642 21997690 chr2R 21997753 21997801 29 109 12.5 7.0 9.8 2.7 159 chr2R 21997642 intron CG34370 - chr2R 21997722 intron CG34370 - chr2R 21997801 intron CG34370 - chr2R_29_21995001 chr2R_21995001 RAL-395 1314 chr2R 22009011 22009076 chr2R 22009126 22009181 8 110 0.5 2.0 1.2 3.6 170 chr2R 22009011 intron CG34370 - chr2R 22009096 intron CG34370 - chr2R 22009181 intron CG34370 - chr2R_8_22005001 chr2R_22005001 RAL-395 1315 chr2R 22012970 22013007 chr2R 22013091 22013127 15 121 6.5 6.0 6.2 2.1 157 chr2R 22012970 intron CG34370 - chr2R 22013048 intron CG34370 - chr2R 22013127 intron CG34370 - chr2R_15_22010001 chr2R_22010001 RAL-395 1316 chr2R 22025621 22025675 chr2R 22025744 22025797 26 122 5.5 8.5 7.0 3.2 176 chr2R 22025621 intron CG34370 - chr2R 22025709 intron CG34370 - chr2R 22025797 intron CG34370 - chr2R_26_22025001 chr2R_22025001 RAL-395 1317 chr2R 22029498 22029531 chr2R 22029602 22029635 13 104 6.0 5.5 5.8 1.9 137 chr2R 22029498 intron CG34370 - chr2R 22029566 intron CG34370 - chr2R 22029635 intron CG34370 - chr2R_13_22025001 chr2R_22025001 RAL-395 1318 chr2R 22091852 22091863 chr2R 22091967 22091978 11 115 21.0 10.5 15.8 0.7 126 chr2R 22091852 exon CG11073 - chr2R 22091915 exon CG11073 - chr2R 22091978 exon CG11073 - chr2R_11_22090001 chr2R_22090001 RAL-395 1319 chr2R 22091883 22091905 chr2R 22091964 22092012 8 110 11.5 10.0 10.8 0.7 129 chr2R 22091883 exon CG11073 - chr2R 22091948 exon CG11073 - chr2R 22092012 exon CG11073 - chr2R_8_22090001 chr2R_22090001 RAL-395 1320 chr2R 22178734 22178777 chr2R 22178847 22178889 6 112 0.0 15.0 7.5 0.7 155 chr2R 22178734 intron CG11170 - chr2R 22178812 intron CG11170 - chr2R 22178889 intron CG11170 - chr2R_6_22175001 chr2R_22175001 RAL-395 1321 chr2R 22179209 22179224 chr2R 22179342 22179357 12 133 0.0 8.5 4.2 2.3 148 chr2R 22179209 intron CG11170 - chr2R 22179283 intron CG11170 - chr2R 22179357 intron CG11170 - chr2R_12_22175001 chr2R_22175001 RAL-395 1322 chr2R 22179225 22179233 chr2R 22179339 22179366 7 129 0.0 7.5 3.8 1.5 141 chr2R 22179225 intron CG11170 - chr2R 22179296 intron CG11170 - chr2R 22179366 intron CG11170 - chr2R_7_22175001 chr2R_22175001 RAL-395 1323 chr2R 22292047 22292105 chr2R 22292160 22292218 29 112 9.0 8.5 8.8 3.0 171 chr2R 22292047 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292218 5` UTR CR43422 + chr2R_29_22290001 chr2R_22290001 RAL-395 1324 chr2R 4825123 4825123 chr2R 22311216 22311219 4 17486094 41.0 16.0 28.5 0.1 17486096 chr2R 4825123 intergenic not near genes chr2R 13568171 intergenic not near genes chr2R 22311219 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-395 1325 chr2R 22349675 22349717 chr2R 22351485 22351526 jockey 22 1810 10.0 10.0 10.0 2.0 1851 chr2R 22349675 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351526 intron Liprin-gamma - chr2R_22_22350001 chr2R_22350001 RAL-395 1326 chr2R 22360361 22360370 chr2R 22360820 22360829 jockey 7 459 14.5 10.5 12.5 0.5 468 chr2R 22360361 intron Liprin-gamma - chr2R 22360595 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-395 1327 chr2R 22465295 22465320 chr2R 22465514 22465539 BS 15 219 15.5 6.5 11.0 1.2 244 chr2R 22465295 intron CG10384 + chr2R 22465417 intron CG10384 + chr2R 22465539 intron CG10384 + chr2R_15_22465001 chr2R_22465001 RAL-395 1328 chr2R 22503854 22503889 chr2R 22503975 22504010 23 120 5.0 8.0 6.5 3.1 156 chr2R 22503854 intron px - chr2R 22503932 intron px - chr2R 22504010 intron px - chr2R_23_22500001 chr2R_22500001 RAL-395 1329 chr2R 22525723 22525773 chr2R 22529304 22529354 jockey 29 3580 11.0 5.0 8.0 3.2 3631 chr2R 22525723 intron px - chr2R 22527538 intron px - chr2R 22529354 intron px - chr2R_29_22525001 chr2R_22525001 RAL-395 1330 chr2R 22574129 22574186 chr2R 22574233 22574292 19 106 6.0 4.5 5.2 3.1 163 chr2R 22574129 intron dnr1 - chr2R 22574210 intron dnr1 - chr2R 22574292 intron dnr1 - chr2R_19_22570001 chr2R_22570001 RAL-395 1331 chr2R 22577064 22577113 chr2R 22577170 22577219 15 104 10.0 0.0 5.0 2.5 155 chr2R 22577064 intron dnr1 - chr2R 22577142 intron dnr1 - chr2R 22577219 intron dnr1 - chr2R_15_22575001 chr2R_22575001 RAL-395 1332 chr2R 22588124 22588158 chr2R 22588245 22588279 19 121 14.0 23.0 18.5 1.0 155 chr2R 22588124 intron dnr1 - chr2R 22588202 intron dnr1 - chr2R 22588279 intron dnr1 - chr2R_19_22585001 chr2R_22585001 RAL-395 1333 chr2R 22623426 22623479 chr2R 22623592 22623636 34 164 8.0 8.5 8.2 3.7 210 chr2R 22623426 intron CG33143 + chr2R 22623531 intron CG33143 + chr2R 22623636 intron CG33143 + chr2R_34_22620001 chr2R_22620001 RAL-395 1334 chr2R 22756632 22756651 chr2R 22756736 22756755 10 104 9.0 5.5 7.2 1.2 123 chr2R 22756632 intron,intron CG42260 -,CR30267 + chr2R 22756694 intron,intron CG42260 -,CR30267 + chr2R 22756755 intron,intron CG42260 -,CR30267 + chr2R_10_22755001 chr2R_22755001 RAL-395 1335 chr2R 22774935 22774996 chr2R 22775380 22775441 jockey 28 445 6.5 7.0 6.8 3.6 506 chr2R 22774935 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775441 intron CG42260 - chr2R_28_22775001 chr2R_22775001 RAL-395 1336 chr2R 22785704 22785757 chr2R 22785808 22785860 28 104 6.5 7.0 6.8 3.6 156 chr2R 22785704 intron CG42260 - chr2R 22785782 intron CG42260 - chr2R 22785860 intron CG42260 - chr2R_28_22785001 chr2R_22785001 RAL-395 1337 chr2R 22834767 22834795 chr2R 22834880 22834934 7 135 0.0 0.5 0.2 5.8 167 chr2R 22834767 intron CG12490 + chr2R 22834850 intron CG12490 + chr2R 22834934 intron CG12490 + chr2R_7_22830001 chr2R_22830001 RAL-395 1338 chr2R 22834293 22834304 chr2R 22836307 22836317 5 2013 46.5 11.0 28.8 0.2 2024 chr2R 22834293 exon CG30265 + chr2R 22835305 exon CG12490 + chr2R 22836317 intron CG12490 + chr2R_5_22835001 chr2R_22835001 RAL-395 1339 chr2R 22834878 22834923 chr2R 22837475 22837520 8 2597 0.5 34.0 17.2 0.4 2642 chr2R 22834878 intron CG12490 + chr2R 22836199 exon CG12490 + chr2R 22837520 intron CG9825 + chr2R_8_22835001 chr2R_22835001 RAL-395 1340 chr2R 22839468 22839526 chr2R 22839573 22839635 14 106 8.0 1.0 4.5 2.5 167 chr2R 22839468 intergenic CG9825 + chr2R 22839552 intergenic CG9825 + chr2R 22839635 intergenic CG9825 + chr2R_14_22835001 chr2R_22835001 RAL-395 1341 chr2R 22843036 22843046 chr2R 22845028 22845037 flea 5 1992 5.5 17.5 11.5 0.4 2001 chr2R 22843036 intergenic CG9826 + chr2R 22844036 intergenic not near genes chr2R 22845037 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-395 1342 chr2R 22899086 22899141 chr2R 22899768 22899825 14 686 59.5 36.0 47.8 0.3 739 chr2R 22899086 intron nahoda + chr2R 22899456 intron nahoda + chr2R 22899825 intron nahoda + chr2R_14_22895001 chr2R_22895001 RAL-395 1343 chr2R 22908452 22908462 chr2R 22908554 22908564 6 102 6.0 7.0 6.5 0.8 112 chr2R 22908452 intron nahoda + chr2R 22908508 intron nahoda + chr2R 22908564 intron nahoda + chr2R_6_22905001 chr2R_22905001 RAL-395 1344 chr2R 22951811 22951860 chr2R 22951923 22951972 17 112 5.0 3.0 4.0 3.4 161 chr2R 22951811 3` UTR CR32835 - chr2R 22951892 3` UTR CR32835 - chr2R 22951972 intron CR32835 - chr2R_17_22950001 chr2R_22950001 RAL-395 1345 chr2R 22969298 22969352 chr2R 22971526 22971576 19 2225 46.0 39.5 42.8 0.4 2278 chr2R 22969298 intergenic not near genes chr2R 22970437 intergenic not near genes chr2R 22971576 intergenic not near genes chr2R_19_22970001 chr2R_22970001 RAL-395 1346 chr2R 22988285 22988323 chr2R 22988392 22988430 18 105 12.5 12.5 12.5 1.3 145 chr2R 22988285 intron twi + chr2R 22988358 intron twi + chr2R 22988430 intron twi + chr2R_18_22985001 chr2R_22985001 RAL-395 1347 chr2R 23037247 23037300 chr2R 23037349 23037401 23 102 7.5 9.5 8.5 2.4 154 chr2R 23037247 intron,intron twi +,CG42741 - chr2R 23037324 intron,intron twi +,CG42741 - chr2R 23037401 intron,intron twi +,CG42741 - chr2R_23_23035001 chr2R_23035001 RAL-395 1348 chr2R 23038432 23038479 chr2R 23038543 23038589 20 111 6.5 5.0 5.8 2.9 157 chr2R 23038432 intron,intron twi +,CG42741 - chr2R 23038510 intron,intron twi +,CG42741 - chr2R 23038589 intron,intron twi +,CG42741 - chr2R_20_23035001 chr2R_23035001 RAL-395 1349 chr2R 23041181 23041200 chr2R 23041285 23041304 10 104 9.0 19.0 14.0 0.7 123 chr2R 23041181 intron,intron twi +,CG42741 - chr2R 23041242 intron,intron twi +,CG42741 - chr2R 23041304 intron,intron twi +,CG42741 - chr2R_10_23040001 chr2R_23040001 RAL-395 1350 chr2R 23061746 23061791 chr2R 23061866 23061908 24 120 6.0 10.5 8.2 2.6 162 chr2R 23061746 3` UTR l(2)06496 - chr2R 23061827 3` UTR l(2)06496 - chr2R 23061908 3` UTR l(2)06496 - chr2R_24_23060001 chr2R_23060001 RAL-395 1351 chr2R 23158326 23158356 chr2R 23158429 23158459 22 102 16.0 11.5 13.8 1.5 133 chr2R 23158326 intron CG9899 + chr2R 23158392 intron CG9899 + chr2R 23158459 intron CG9899 + chr2R_22_23155001 chr2R_23155001 RAL-395 1352 chr2R 23175013 23175067 chr2R 23175116 23175170 31 103 7.5 5.5 6.5 4.1 157 chr2R 23175013 intron CG34371 - chr2R 23175092 intron CG34371 - chr2R 23175170 intron CG34371 - chr2R_31_23175001 chr2R_23175001 RAL-395 1353 chr2R 23189989 23190021 chr2R 23190099 23190131 18 108 8.0 0.0 4.0 3.6 142 chr2R 23189989 intron CG34371 - chr2R 23190060 intron CG34371 - chr2R 23190131 intron CG34371 - chr2R_18_23190001 chr2R_23190001 RAL-395 1354 chr2R 23207828 23207854 chr2R 23207932 23207959 18 105 20.0 9.0 14.5 1.2 131 chr2R 23207828 intergenic not near genes chr2R 23207894 intergenic not near genes chr2R 23207959 intergenic not near genes chr2R_18_23205001 chr2R_23205001 RAL-395 1355 chr2R 23218981 23219004 chr2R 23219246 23219269 14 265 9.5 0.0 4.8 2.4 288 chr2R 23218981 intergenic not near genes chr2R 23219125 intergenic not near genes chr2R 23219269 intergenic not near genes chr2R_14_23215001 chr2R_23215001 RAL-395 1356 chr2R 23236792 23236851 chr2R 23236916 23236971 18 120 5.5 1.5 3.5 4.0 179 chr2R 23236792 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236971 intergenic not near genes chr2R_18_23235001 chr2R_23235001 RAL-395 1357 chr2R 23253914 23253920 chr2R 23254261 23254265 5 347 9.0 2.0 5.5 0.8 351 chr2R 23253914 intergenic not near genes chr2R 23254090 intergenic not near genes chr2R 23254265 intergenic not near genes chr2R_5_23250001 chr2R_23250001 RAL-395 1358 chr2R 23287794 23287849 chr2R 23287898 23287950 26 104 5.5 13.5 9.5 2.5 156 chr2R 23287794 intergenic not near genes chr2R 23287872 intergenic not near genes chr2R 23287950 intergenic not near genes chr2R_26_23285001 chr2R_23285001 RAL-395 1359 chr2R 23356252 23356309 chr2R 23356367 23356424 34 114 6.0 10.0 8.0 3.8 172 chr2R 23356252 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356424 3` UTR,3` UTR Rpi +,CG3500 - chr2R_34_23355001 chr2R_23355001 RAL-395 1360 chr2R 23411023 23411077 chr2R 23411131 23411183 14 107 7.5 2.0 4.8 2.4 160 chr2R 23411023 intergenic not near genes chr2R 23411103 intergenic not near genes chr2R 23411183 intergenic not near genes chr2R_14_23410001 chr2R_23410001 RAL-395 1361 chr2R 23423719 23423773 chr2R 23423902 23423957 24 182 4.0 8.0 6.0 3.4 238 chr2R 23423719 intron CG9815 - chr2R 23423838 intron CG9815 - chr2R 23423957 intron CG9815 - chr2R_24_23420001 chr2R_23420001 RAL-395 1362 chr2R 23429186 23429237 chr2R 23429437 23429488 22 251 4.0 9.5 6.8 2.8 302 chr2R 23429186 intron CG9815 - chr2R 23429337 intron CG9815 - chr2R 23429488 intron CG9815 - chr2R_22_23425001 chr2R_23425001 RAL-395 1363 chr2R 23437205 23437230 chr2R 23437307 23437333 21 103 9.0 6.0 7.5 2.5 128 chr2R 23437205 intergenic not near genes chr2R 23437269 intergenic not near genes chr2R 23437333 intergenic not near genes chr2R_21_23435001 chr2R_23435001 RAL-395 1364 chr2R 23461127 23461140 chr2R 23461230 23461242 8 102 14.5 16.0 15.2 0.5 115 chr2R 23461127 intron CG43795 + chr2R 23461184 intron CG43795 + chr2R 23461242 intron CG43795 + chr2R_8_23460001 chr2R_23460001 RAL-395 1365 chr2R 23518167 23518218 chr2R 23518271 23518328 16 106 7.5 0.0 3.8 3.3 161 chr2R 23518167 intergenic not near genes chr2R 23518248 intergenic not near genes chr2R 23518328 intergenic not near genes chr2R_16_23515001 chr2R_23515001 RAL-395 1366 chr2R 23529550 23529605 chr2R 23537151 23537207 412 45 7600 10.0 12.5 11.2 3.7 7657 chr2R 23529550 intron bw - chr2R 23533378 intron bw - chr2R 23537207 exon bw - chr2R_45_23530001 chr2R_23530001 RAL-395 1367 chr2R 23589153 23589194 chr2R 23589256 23589297 15 103 10.0 13.0 11.5 1.2 144 chr2R 23589153 intron apt + chr2R 23589225 intron apt + chr2R 23589297 intron apt + chr2R_15_23585001 chr2R_23585001 RAL-395 1368 chr2R 23721781 23721787 chr2R 23721891 23721897 6 110 7.5 14.5 11.0 0.5 116 chr2R 23721781 intron Sesn + chr2R 23721839 intron Sesn + chr2R 23721897 intron Sesn + chr2R_6_23720001 chr2R_23720001 RAL-395 1369 chr2R 23722952 23723006 chr2R 23723054 23723108 26 102 7.5 7.0 7.2 3.2 156 chr2R 23722952 intron Sesn + chr2R 23723030 intron Sesn + chr2R 23723108 intron Sesn + chr2R_26_23720001 chr2R_23720001 RAL-395 1370 chr2R 23726196 23726252 chr2R 23726312 23726368 32 116 5.0 9.0 7.0 4.0 172 chr2R 23726196 intron Sesn + chr2R 23726282 intron Sesn + chr2R 23726368 intron Sesn + chr2R_32_23725001 chr2R_23725001 RAL-395 1371 chr2R 23739726 23739729 chr2R 23739826 23739831 4 102 19.5 14.0 16.8 0.2 105 chr2R 23739726 intron egl - chr2R 23739778 intron egl - chr2R 23739831 intron egl - chr2R_4_23735001 chr2R_23735001 RAL-395 1372 chr2R 23784446 23784504 chr2R 23784550 23784608 28 104 5.5 7.0 6.2 3.9 162 chr2R 23784446 intron CG9850 - chr2R 23784527 intron CG9850 - chr2R 23784608 intron CG9850 - chr2R_28_23780001 chr2R_23780001 RAL-395 1373 chr2R 23831275 23831311 chr2R 23831383 23831421 27 108 9.5 14.0 11.8 2.1 146 chr2R 23831275 intron CG5549 + chr2R 23831348 intron CG5549 + chr2R 23831421 intron CG5549 + chr2R_27_23830001 chr2R_23830001 RAL-395 1374 chr2R 23865801 23865846 chr2R 23865909 23865954 33 108 11.0 4.5 7.8 3.7 153 chr2R 23865801 intron CG5569 + chr2R 23865878 intron CG5569 + chr2R 23865954 intron CG5569 + chr2R_33_23865001 chr2R_23865001 RAL-395 1375 chr2R 23914272 23914328 chr2R 23921922 23921978 412 26 7648 7.5 6.0 6.8 3.3 7706 chr2R 23914272 exon kcc + chr2R 23918125 intron kcc + chr2R 23921978 exon kcc + chr2R_26_23915001 chr2R_23915001 RAL-395 1376 chr2R 24031356 24031412 chr2R 24031466 24031522 39 109 8.5 10.5 9.5 3.7 166 chr2R 24031356 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031522 intergenic Chi -,CG30172 - chr2R_39_24030001 chr2R_24030001 RAL-395 1377 chr2R 24147052 24147060 chr2R 24154656 24154663 412 7 7604 17.0 15.5 16.2 0.4 7611 chr2R 24147052 intron Dat + chr2R 24150858 intron Dat + chr2R 24154663 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-395 1378 chr2R 24147064 24147097 chr2R 24154644 24154701 412 26 7602 9.0 9.5 9.2 2.5 7637 chr2R 24147064 intron Dat + chr2R 24150882 intron Dat + chr2R 24154701 intron Dat + chr2R_26_24150001 chr2R_24150001 RAL-395 1379 chr2R 24177210 24177264 chr2R 24184721 24184775 412 31 7510 10.0 7.5 8.8 3.2 7565 chr2R 24177210 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184775 3` UTR Nop60B + chr2R_31_24180001 chr2R_24180001 RAL-395 1380 chr2R 24272802 24272812 chr2R 24272905 24272916 roo 7 103 11.0 22.0 16.5 0.4 114 chr2R 24272802 intergenic not near genes chr2R 24272859 intergenic not near genes chr2R 24272916 intergenic not near genes chr2R_7_24270001 chr2R_24270001 RAL-395 1381 chr2R 24278298 24278352 chr2R 24278404 24278455 23 109 8.0 10.0 9.0 2.3 157 chr2R 24278298 intron nvy + chr2R 24278376 intron nvy + chr2R 24278455 intron nvy + chr2R_23_24275001 chr2R_24275001 RAL-395 1382 chr2R 24291922 24291976 chr2R 24292081 24292135 26 159 6.5 7.0 6.8 3.3 213 chr2R 24291922 intergenic not near genes chr2R 24292028 intergenic not near genes chr2R 24292135 intergenic not near genes chr2R_26_24290001 chr2R_24290001 RAL-395 1383 chr2R 24351386 24351437 chr2R 24351493 24351544 32 106 6.5 7.0 6.8 4.1 158 chr2R 24351386 intron,5` UTR bs +,CG44812 - chr2R 24351465 intron bs + chr2R 24351544 intron,3` UTR bs +,CR44811 - chr2R_32_24350001 chr2R_24350001 RAL-395 1384 chr2R 24353407 24353441 chr2R 24361795 24361829 roo 19 8387 10.0 1.0 5.5 2.9 8422 chr2R 24353407 intron,intron bs +,CR44811 - chr2R 24357618 intron,intron bs +,CR44811 - chr2R 24361829 intron,intron bs +,CR44811 - chr2R_19_24355001 chr2R_24355001 RAL-395 1385 chr2R 24383801 24383851 chr2R 24383908 24383958 11 107 3.0 5.5 4.2 2.1 157 chr2R 24383801 intron mAChR-A - chr2R 24383880 intron mAChR-A - chr2R 24383958 exon mAChR-A - chr2R_11_24380001 chr2R_24380001 RAL-395 1386 chr2R 24467068 24467122 chr2R 24467202 24467256 20 133 6.0 8.5 7.2 2.4 188 chr2R 24467068 intron CG13579 + chr2R 24467162 intron CG13579 + chr2R 24467256 intron CG13579 + chr2R_20_24465001 chr2R_24465001 RAL-395 1387 chr2R 24520587 24520641 chr2R 24520696 24520750 38 107 8.5 10.0 9.2 3.7 163 chr2R 24520587 exon Ir60d + chr2R 24520668 exon Ir60d + chr2R 24520750 exon Ir60d + chr2R_38_24520001 chr2R_24520001 RAL-395 1388 chr2R 24590069 24590146 chr2R 24590203 24590264 31 132 0.0 6.5 3.2 7.4 195 chr2R 24590069 intron pio + chr2R 24590166 intron pio + chr2R 24590264 intron pio + chr2R_31_24590001 chr2R_24590001 RAL-395 1389 chr2R 24592932 24592977 chr2R 24593051 24593059 24 115 10.0 13.5 11.8 1.9 127 chr2R 24592932 intron pio + chr2R 24592996 intron pio + chr2R 24593059 intron pio + chr2R_24_24590001 chr2R_24590001 RAL-395 1390 chr2R 24633966 24634021 chr2R 24634073 24634128 33 106 8.5 10.0 9.2 3.2 162 chr2R 24633966 intron CG13594 - chr2R 24634047 intron CG13594 - chr2R 24634128 intron CG13594 - chr2R_33_24630001 chr2R_24630001 RAL-395 1391 chr2R 24647548 24647618 chr2R 24655144 24655201 412 17 7592 0.0 7.5 3.8 3.5 7653 chr2R 24647548 intergenic not near genes chr2R 24651374 intergenic not near genes chr2R 24655201 intergenic not near genes chr2R_17_24650001 chr2R_24650001 RAL-395 1392 chr2R 24687620 24687667 chr2R 24687731 24687778 39 109 6.5 10.5 8.5 4.1 158 chr2R 24687620 intergenic Mmp1 - chr2R 24687699 intergenic Mmp1 - chr2R 24687778 intergenic Mmp1 - chr2R_39_24685001 chr2R_24685001 RAL-395 1393 chr2R 24718436 24718489 chr2R 24718544 24718587 30 107 9.5 13.5 11.5 2.4 151 chr2R 24718436 intron Mid1 - chr2R 24718512 intron Mid1 - chr2R 24718587 intron Mid1 - chr2R_30_24715001 chr2R_24715001 RAL-395 1394 chr2R 24719797 24719812 chr2R 24719935 24719950 11 137 13.5 14.0 13.8 0.7 153 chr2R 24719797 intron Mid1 - chr2R 24719874 intron Mid1 - chr2R 24719950 intron Mid1 - chr2R_11_24715001 chr2R_24715001 RAL-395 1395 chr2R 24719816 24719825 chr2R 24719932 24719963 12 136 9.5 14.0 11.8 0.9 147 chr2R 24719816 intron Mid1 - chr2R 24719890 intron Mid1 - chr2R 24719963 intron Mid1 - chr2R_12_24715001 chr2R_24715001 RAL-395 1396 chr2R 24727856 24727916 chr2R 24735390 24735428 mdg1 33 7532 10.0 4.5 7.2 4.0 7572 chr2R 24727856 intron Mid1 - chr2R 24731642 intron Mid1 - chr2R 24735428 intron Mid1 - chr2R_33_24730001 chr2R_24730001 RAL-395 1397 chr2R 24747245 24747263 chr2R 24747351 24747361 10 105 12.5 14.0 13.2 0.7 116 chr2R 24747245 intron CG30421 + chr2R 24747303 intron CG30421 + chr2R 24747361 intron CG30421 + chr2R_10_24745001 chr2R_24745001 RAL-395 1398 chr2R 24763585 24763644 chr2R 24765587 24765646 G2 39 2001 9.5 11.5 10.5 3.4 2061 chr2R 24763585 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765646 exon CG3894 + chr2R_39_24760001 chr2R_24760001 RAL-395 1399 chr2R 24767969 24768000 chr2R 24768080 24768112 14 112 12.5 8.5 10.5 1.2 143 chr2R 24767969 5` UTR GstE12 - chr2R 24768040 5` UTR GstE12 - chr2R 24768112 5` UTR GstE12 - chr2R_14_24765001 chr2R_24765001 RAL-395 1400 chr2R 24768001 24768019 chr2R 24768079 24768131 13 109 8.0 8.0 8.0 1.4 130 chr2R 24768001 5` UTR GstE12 - chr2R 24768066 5` UTR GstE12 - chr2R 24768131 5` UTR GstE12 - chr2R_13_24765001 chr2R_24765001 RAL-395 1401 chr2R 24837935 24837950 chr2R 24838043 24838053 7 108 3.5 9.0 6.2 1.0 118 chr2R 24837935 intergenic not near genes chr2R 24837994 intergenic not near genes chr2R 24838053 intergenic not near genes chr2R_7_24835001 chr2R_24835001 RAL-395 1402 chr2R 25060883 25060936 chr2R 25060999 25061052 27 115 8.5 8.0 8.2 2.9 169 chr2R 25060883 intergenic not near genes chr2R 25060968 intergenic not near genes chr2R 25061052 intergenic not near genes chr2R_27_25060001 chr2R_25060001 RAL-395 1403 chr2R 25101248 25101304 chr2R 25101376 25101431 44 128 14.0 8.5 11.2 3.6 183 chr2R 25101248 intron lov - chr2R 25101340 intron lov - chr2R 25101431 intron lov - chr2R_44_25100001 chr2R_25100001 RAL-395 1404 chr2R 25102504 25102555 chr2R 25102698 25102746 24 195 4.5 8.5 6.5 3.2 242 chr2R 25102504 intron lov - chr2R 25102625 intron lov - chr2R 25102746 intron lov - chr2R_24_25100001 chr2R_25100001 RAL-395 1405 chr2R 25104754 25104807 chr2R 25104905 25104958 21 151 8.0 5.5 6.8 2.7 204 chr2R 25104754 intron lov - chr2R 25104856 intron lov - chr2R 25104958 intron lov - chr2R_21_25100001 chr2R_25100001 RAL-395 1406 chr2R 25130985 25131037 chr2R 25131088 25131120 18 102 7.0 6.0 6.5 2.4 135 chr2R 25130985 intron lov - chr2R 25131052 intron lov - chr2R 25131120 intron lov - chr2R_18_25130001 chr2R_25130001 RAL-395 1407 chr2R 25133940 25134001 chr2R 25134202 25134261 21 260 3.0 6.0 4.5 3.8 321 chr2R 25133940 intron lov - chr2R 25134100 intron lov - chr2R 25134261 intron lov - chr2R_21_25130001 chr2R_25130001 RAL-395 1408 chr2R 25141632 25141681 chr2R 25159348 25159396 roo 24 17716 9.0 7.0 8.0 2.7 17764 chr2R 25141632 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159396 intergenic not near genes chr2R_24_25150001 chr2R_25150001 RAL-395 1409 chr2R 25171476 25171513 chr2R 25171579 25171616 13 103 3.0 6.5 4.8 2.2 140 chr2R 25171476 intergenic not near genes chr2R 25171546 intergenic not near genes chr2R 25171616 intergenic not near genes chr2R_13_25170001 chr2R_25170001 RAL-395 1410 chr2R 25175358 25175417 chr2R 25175467 25175526 22 109 4.5 4.5 4.5 4.0 168 chr2R 25175358 3` UTR Peb - chr2R 25175442 3` UTR Peb - chr2R 25175526 exon Peb - chr2R_22_25175001 chr2R_25175001 RAL-395 1411 chr2R 25191707 25191717 chr2R 25191811 25191821 4 104 3.5 8.0 5.8 0.6 114 chr2R 25191707 intron CG9380 - chr2R 25191764 intron CG9380 - chr2R 25191821 intron CG9380 - chr2R_4_25190001 chr2R_25190001 RAL-395 1412 chr2R 25193316 25193321 chr2R 25193484 25193489 5 167 11.5 2.0 6.8 0.6 173 chr2R 25193316 intron CG9380 - chr2R 25193402 intron CG9380 - chr2R 25193489 intron CG9380 - chr2R_5_25190001 chr2R_25190001 RAL-395 1413 chr2R 25193322 25193368 chr2R 25193483 25193537 13 168 4.0 2.0 3.0 3.2 215 chr2R 25193322 intron CG9380 - chr2R 25193430 intron CG9380 - chr2R 25193537 intron CG9380 - chr2R_13_25190001 chr2R_25190001 RAL-395 1414 chr2R 25234740 25234750 chr2R 25234846 25234856 7 106 16.5 5.0 10.8 0.6 116 chr2R 25234740 intron CG9380 - chr2R 25234798 intron CG9380 - chr2R 25234856 intron CG9380 - chr2R_7_25230001 chr2R_25230001 RAL-395 1415 chr2R 25234752 25234795 chr2R 25234845 25234901 23 105 6.0 5.0 5.5 3.5 149 chr2R 25234752 intron CG9380 - chr2R 25234826 intron CG9380 - chr2R 25234901 intron CG9380 - chr2R_23_25230001 chr2R_25230001 RAL-395 1416 chr3L 91816 91824 chr3L 91918 91928 4 104 5.0 11.0 8.0 0.4 112 chr3L 91816 intergenic not near genes chr3L 91872 intergenic not near genes chr3L 91928 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-395 1417 chr3L 91826 91843 chr3L 91902 91946 4 96 5.0 8.5 6.8 0.5 120 chr3L 91826 intergenic not near genes chr3L 91886 intergenic not near genes chr3L 91946 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-395 1418 chr3L 110187 110238 chr3L 119380 119431 roo 23 9193 10.5 10.0 10.2 2.1 9244 chr3L 110187 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119431 intergenic not near genes chr3L_23_110001 chr3L_110001 RAL-395 1419 chr3L 391897 391942 chr3L 392016 392061 15 119 0.0 8.0 4.0 3.0 164 chr3L 391897 intron trh - chr3L 391979 intron trh - chr3L 392061 intron,3` UTR trh -,CR45378 - chr3L_15_390001 chr3L_390001 RAL-395 1420 chr3L 402663 402717 chr3L 409742 409796 297 30 7078 10.5 11.5 11.0 2.5 7133 chr3L 402663 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409796 intergenic not near genes chr3L_30_405001 chr3L_405001 RAL-395 1421 chr3L 428163 428177 chr3L 428310 428324 10 147 14.0 0.0 7.0 1.2 161 chr3L 428163 intergenic not near genes chr3L 428244 intergenic not near genes chr3L 428324 intergenic not near genes chr3L_10_425001 chr3L_425001 RAL-395 1422 chr3L 477871 477889 chr3L 477977 477998 11 107 12.0 0.0 6.0 1.6 127 chr3L 477871 intron klar - chr3L 477934 intron klar - chr3L 477998 intron klar - chr3L_11_475001 chr3L_475001 RAL-395 1423 chr3L 561456 561489 chr3L 561559 561592 15 103 10.0 0.0 5.0 2.5 136 chr3L 561456 intron hipk + chr3L 561524 intron hipk + chr3L 561592 intron hipk + chr3L_15_560001 chr3L_560001 RAL-395 1424 chr3L 563576 563593 chr3L 563680 563697 15 102 7.0 18.5 12.8 1.1 121 chr3L 563576 intron hipk + chr3L 563636 intron hipk + chr3L 563697 intron hipk + chr3L_15_560001 chr3L_560001 RAL-395 1425 chr3L 563947 563996 chr3L 564152 564201 33 203 10.0 7.0 8.5 3.5 254 chr3L 563947 intron hipk + chr3L 564074 intron hipk + chr3L 564201 intron hipk + chr3L_33_560001 chr3L_560001 RAL-395 1426 chr3L 592939 592967 chr3L 593041 593069 10 102 1.5 8.0 4.8 1.7 130 chr3L 592939 intergenic MED14 + chr3L 593004 intergenic MED14 + chr3L 593069 intergenic MED14 + chr3L_10_590001 chr3L_590001 RAL-395 1427 chr3L 618412 618438 chr3L 618563 618589 11 151 7.0 5.0 6.0 1.6 177 chr3L 618412 intergenic not near genes chr3L 618500 intergenic not near genes chr3L 618589 intergenic not near genes chr3L_11_615001 chr3L_615001 RAL-395 1428 chr3L 642449 642493 chr3L 642566 642610 21 117 6.5 7.0 6.8 2.7 161 chr3L 642449 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642610 5` UTR CR43334 + chr3L_21_640001 chr3L_640001 RAL-395 1429 chr3L 643825 643830 chr3L 21448026 21448026 6 20804199 40.0 42.5 41.2 0.1 20804201 chr3L 643825 5` UTR CR43334 + chr3L 11045926 intron CG43693 - chr3L 21448026 3` UTR Syx7 + chr3L_6_11045001 chr3L_11045001 RAL-395 1430 chr3L 705876 705928 chr3L 705997 706050 28 122 8.0 9.0 8.5 2.9 174 chr3L 705876 intergenic CG13895 -,CR44514 + chr3L 705963 3` UTR CG13895 - chr3L 706050 3` UTR CG13895 - chr3L_28_705001 chr3L_705001 RAL-395 1431 chr3L 761187 761219 chr3L 761275 761314 10 101 4.5 5.5 5.0 1.7 127 chr3L 761187 intergenic not near genes chr3L 761250 intergenic not near genes chr3L 761314 intergenic not near genes chr3L_10_760001 chr3L_760001 RAL-395 1432 chr3L 789891 789939 chr3L 790402 790450 roo 27 509 9.0 10.0 9.5 2.6 559 chr3L 789891 intergenic not near genes chr3L 790170 intergenic not near genes chr3L 790450 intergenic not near genes chr3L_27_790001 chr3L_790001 RAL-395 1433 chr3L 802565 802566 chr3L 11777678 11777678 12 10975112 44.0 47.5 45.8 0.3 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_12_6290001 chr3L_6290001 RAL-395 1434 chr3L 822059 822095 chr3L 822165 822200 17 106 0.0 16.0 8.0 1.9 141 chr3L 822059 intergenic not near genes chr3L 822130 intergenic not near genes chr3L 822200 intergenic not near genes chr3L_17_820001 chr3L_820001 RAL-395 1435 chr3L 824023 824035 chr3L 824131 824143 6 108 12.0 0.0 6.0 0.9 120 chr3L 824023 intergenic not near genes chr3L 824083 intergenic not near genes chr3L 824143 intergenic not near genes chr3L_6_820001 chr3L_820001 RAL-395 1436 chr3L 857975 858019 chr3L 866482 866518 Tirant 32 8506 14.5 6.5 10.5 2.8 8543 chr3L 857975 intergenic not near genes chr3L 862246 intergenic not near genes chr3L 866518 5` UTR CG12502 + chr3L_32_860001 chr3L_860001 RAL-395 1437 chr3L 901400 901451 chr3L 901510 901560 36 107 5.0 8.0 6.5 4.8 160 chr3L 901400 intergenic not near genes chr3L 901480 intergenic not near genes chr3L 901560 intergenic not near genes chr3L_36_900001 chr3L_900001 RAL-395 1438 chr3L 905076 905094 chr3L 905186 905204 7 110 0.0 4.5 2.2 2.2 128 chr3L 905076 intergenic not near genes chr3L 905140 intergenic not near genes chr3L 905204 intergenic not near genes chr3L_7_905001 chr3L_905001 RAL-395 1439 chr3L 925151 925200 chr3L 932602 932652 mdg1 34 7452 8.0 6.5 7.2 4.1 7501 chr3L 925151 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932652 intron Glut1 + chr3L_34_925001 chr3L_925001 RAL-395 1440 chr3L 933884 933944 chr3L 934014 934073 21 128 5.0 7.5 6.2 2.9 189 chr3L 933884 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934073 intron Glut1 + chr3L_21_930001 chr3L_930001 RAL-395 1441 chr3L 939750 939795 chr3L 940897 940942 jockey 27 1147 11.5 15.0 13.2 1.9 1192 chr3L 939750 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940942 intron Glut1 + chr3L_27_940001 chr3L_940001 RAL-395 1442 chr3L 947592 947645 chr3L 947802 947855 32 210 11.5 8.0 9.8 3.0 263 chr3L 947592 intron Glut1 + chr3L 947724 intron Glut1 + chr3L 947855 intron Glut1 + chr3L_32_945001 chr3L_945001 RAL-395 1443 chr3L 949867 949917 chr3L 949978 950028 30 110 11.5 9.5 10.5 2.6 161 chr3L 949867 intron Glut1 + chr3L 949948 intron Glut1 + chr3L 950028 intron Glut1 + chr3L_30_945001 chr3L_945001 RAL-395 1444 chr3L 960404 960459 chr3L 960530 960588 29 128 5.0 4.0 4.5 5.3 184 chr3L 960404 intron Glut1 + chr3L 960496 intron Glut1 + chr3L 960588 intron Glut1 + chr3L_29_960001 chr3L_960001 RAL-395 1445 chr3L 1010974 1011218 chr3L 1011081 1011321 26 106 11.5 4.0 7.8 3.0 347 chr3L 1010974 intron trio - chr3L 1011148 intron trio - chr3L 1011321 intron trio - chr3L_26_1010001 chr3L_1010001 RAL-395 1446 chr3L 1015001 1015055 chr3L 1015139 1015193 33 137 7.0 8.5 7.8 3.7 192 chr3L 1015001 intron trio - chr3L 1015097 intron trio - chr3L 1015193 intron trio - chr3L_33_1015001 chr3L_1015001 RAL-395 1447 chr3L 1022032 1022085 chr3L 1022139 1022194 20 108 4.5 7.5 6.0 2.9 162 chr3L 1022032 intron trio - chr3L 1022113 intron trio - chr3L 1022194 intron trio - chr3L_20_1020001 chr3L_1020001 RAL-395 1448 chr3L 1031554 1031604 chr3L 1031656 1031704 21 99 10.0 12.5 11.2 1.7 150 chr3L 1031554 intron trio - chr3L 1031629 intron trio - chr3L 1031704 intron trio - chr3L_21_1030001 chr3L_1030001 RAL-395 1449 chr3L 1039276 1039332 chr3L 1039760 1039816 29 484 9.5 13.5 11.5 2.3 540 chr3L 1039276 intron bab1 - chr3L 1039546 intron bab1 - chr3L 1039816 exon bab1 - chr3L_29_1035001 chr3L_1035001 RAL-395 1450 chr3L 1040522 1040581 chr3L 1040632 1040691 39 110 6.0 7.0 6.5 5.2 169 chr3L 1040522 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040691 intron bab1 - chr3L_39_1040001 chr3L_1040001 RAL-395 1451 chr3L 1042935 1042988 chr3L 1043039 1043091 32 104 8.0 5.0 6.5 4.3 156 chr3L 1042935 intron bab1 - chr3L 1043013 intron bab1 - chr3L 1043091 intron bab1 - chr3L_32_1040001 chr3L_1040001 RAL-395 1452 chr3L 1047326 1047385 chr3L 1055164 1055223 412 29 7833 1.5 12.0 6.8 3.7 7897 chr3L 1047326 intron bab1 - chr3L 1051274 intron bab1 - chr3L 1055223 intron bab1 - chr3L_29_1050001 chr3L_1050001 RAL-395 1453 chr3L 1103968 1104012 chr3L 1104185 1104216 35 216 8.5 11.0 9.8 3.2 248 chr3L 1103968 intergenic not near genes chr3L 1104092 intergenic not near genes chr3L 1104216 intergenic not near genes chr3L_35_1100001 chr3L_1100001 RAL-395 1454 chr3L 1154119 1154160 chr3L 1163295 1163336 roo 9 9176 8.5 9.5 9.0 0.9 9217 chr3L 1154119 intron bab2 - chr3L 1158728 intron bab2 - chr3L 1163336 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-395 1455 chr3L 1210360 1210399 chr3L 1210726 1210747 14 363 14.0 4.5 9.2 1.4 387 chr3L 1210360 intron mwh + chr3L 1210554 intron,exon mwh +,LysC + chr3L 1210747 intron,exon,3` UTR mwh +,LysC +,LysD - chr3L_14_1210001 chr3L_1210001 RAL-395 1456 chr3L 1219568 1219616 chr3L 1227327 1227375 412 21 7757 14.0 12.0 13.0 1.5 7807 chr3L 1219568 intron mwh + chr3L 1223472 intron mwh + chr3L 1227375 intron mwh + chr3L_21_1220001 chr3L_1220001 RAL-395 1457 chr3L 1310982 1311041 chr3L 1315816 1315875 46 4837 78.5 69.5 74.0 0.6 4893 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_46_1310001 chr3L_1310001 RAL-395 1458 chr3L 1347134 1347190 chr3L 1347245 1347301 27 109 7.5 10.5 9.0 2.7 167 chr3L 1347134 intron Ptp61F - chr3L 1347218 intron Ptp61F - chr3L 1347301 intron Ptp61F - chr3L_27_1345001 chr3L_1345001 RAL-395 1459 chr3L 1349655 1349717 chr3L 1349767 1349798 37 109 6.0 13.5 9.8 3.4 143 chr3L 1349655 intron Ptp61F - chr3L 1349726 intron Ptp61F - chr3L 1349798 intron Ptp61F - chr3L_37_1345001 chr3L_1345001 RAL-395 1460 chr3L 1356987 1357011 chr3L 1357090 1357114 21 102 12.5 13.0 12.8 1.5 127 chr3L 1356987 intron Ptp61F - chr3L 1357050 intron Ptp61F - chr3L 1357114 intron Ptp61F - chr3L_21_1355001 chr3L_1355001 RAL-395 1461 chr3L 1396715 1396759 chr3L 1396825 1396867 26 109 10.0 14.0 12.0 2.0 152 chr3L 1396715 intron Ptp61F - chr3L 1396791 intron Ptp61F - chr3L 1396867 intron Ptp61F - chr3L_26_1395001 chr3L_1395001 RAL-395 1462 chr3L 1424755 1424773 chr3L 1430022 1430045 Rt1a 13 5270 0.0 12.5 6.2 1.8 5290 chr3L 1424755 intron Ptp61F - chr3L 1427400 intron Ptp61F - chr3L 1430045 intron Ptp61F - chr3L_13_1425001 chr3L_1425001 RAL-395 1463 chr3L 1485715 1485738 chr3L 1486908 1486931 1360 16 1193 13.5 26.5 20.0 0.8 1216 chr3L 1485715 intron stet - chr3L 1486323 intron stet - chr3L 1486931 intron stet - chr3L_16_1485001 chr3L_1485001 RAL-395 1464 chr3L 1501969 1502017 chr3L 1502076 1502123 30 107 6.0 10.5 8.2 3.3 154 chr3L 1501969 intron pUf68 - chr3L 1502046 intron pUf68 - chr3L 1502123 intron pUf68 - chr3L_30_1500001 chr3L_1500001 RAL-395 1465 chr3L 1505976 1506030 chr3L 1513599 1513653 17.6 28 7623 8.0 5.5 6.8 3.6 7677 chr3L 1505976 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513653 intron,intron Psa +,cue - chr3L_28_1505001 chr3L_1505001 RAL-395 1466 chr3L 1537025 1537082 chr3L 1537137 1537194 16 112 5.0 5.0 5.0 2.7 169 chr3L 1537025 intergenic CG7852 +,CG12091 - chr3L 1537110 intergenic CG7852 +,CG12091 - chr3L 1537194 5` UTR CG7852 + chr3L_16_1535001 chr3L_1535001 RAL-395 1467 chr3L 1571224 1571494 chr3L 1571330 1571606 42 109 5.0 10.5 7.8 4.8 382 chr3L 1571224 intron CG12004 + chr3L 1571415 intron CG12004 + chr3L 1571606 intron CG12004 + chr3L_42_1570001 chr3L_1570001 RAL-395 1468 chr3L 1584115 1584124 chr3L 1584223 1584232 6 108 0.5 14.5 7.5 0.7 117 chr3L 1584115 intron CG13917 + chr3L 1584174 intron CG13917 + chr3L 1584232 intron CG13917 + chr3L_6_1580001 chr3L_1580001 RAL-395 1469 chr3L 1674309 1674359 chr3L 1674418 1674468 54 108 12.0 16.0 14.0 3.6 159 chr3L 1674309 intergenic CG7991 + chr3L 1674388 intergenic CG7991 + chr3L 1674468 intergenic CG7991 + chr3L_54_1670001 chr3L_1670001 RAL-395 1470 chr3L 1670432 1670447 chr3L 1681724 1681738 10 11292 61.0 15.5 38.2 0.3 11306 chr3L 1670432 3` UTR CG13930 - chr3L 1676085 intron CG7991 + chr3L 1681738 intron CG7991 + chr3L_10_1675001 chr3L_1675001 RAL-395 1471 chr3L 1670428 1670467 chr3L 1681740 1681758 9 11295 69.5 11.0 40.2 0.2 11330 chr3L 1670428 3` UTR CG13930 - chr3L 1676093 intron CG7991 + chr3L 1681758 intron CG7991 + chr3L_9_1675001 chr3L_1675001 RAL-395 1472 chr3L 1740833 1740861 chr3L 1741102 1741130 pogo 6 269 11.0 7.0 9.0 0.6 297 chr3L 1740833 intron Gk + chr3L 1740982 intron Gk + chr3L 1741130 intron Gk + chr3L_6_1740001 chr3L_1740001 RAL-395 1473 chr3L 1805675 1805707 chr3L 1805875 1805907 10 200 8.5 4.5 6.5 1.3 232 chr3L 1805675 exon CG42676 + chr3L 1805791 intron CG42676 + chr3L 1805907 intron CG42676 + chr3L_10_1805001 chr3L_1805001 RAL-395 1474 chr3L 1817542 1817597 chr3L 1817653 1817706 26 110 7.0 9.0 8.0 2.9 164 chr3L 1817542 intron GV1 + chr3L 1817624 intron GV1 + chr3L 1817706 intron GV1 + chr3L_26_1815001 chr3L_1815001 RAL-395 1475 chr3L 1853019 1853042 chr3L 1853129 1853152 13 110 8.5 2.0 5.2 2.1 133 chr3L 1853019 intron CG13936 - chr3L 1853086 intron CG13936 - chr3L 1853152 intron CG13936 - chr3L_13_1850001 chr3L_1850001 RAL-395 1476 chr3L 1922419 1922444 chr3L 1922525 1922550 15 106 5.5 18.0 11.8 1.2 131 chr3L 1922419 intron Dbx + chr3L 1922484 intron Dbx + chr3L 1922550 intron Dbx + chr3L_15_1920001 chr3L_1920001 RAL-395 1477 chr3L 1930856 1930904 chr3L 1931011 1931059 14 151 8.0 12.5 10.2 1.2 203 chr3L 1930856 intron Dbx + chr3L 1930958 intron Dbx + chr3L 1931059 intron Dbx + chr3L_14_1930001 chr3L_1930001 RAL-395 1478 chr3L 1988817 1988866 chr3L 1989022 1989067 27 203 0.0 7.0 3.5 6.0 250 chr3L 1988817 intergenic not near genes chr3L 1988942 intergenic not near genes chr3L 1989067 intergenic not near genes chr3L_27_1985001 chr3L_1985001 RAL-395 1479 chr3L 2013785 2013823 chr3L 2013985 2014024 21 200 8.5 10.0 9.2 2.1 239 chr3L 2013785 intergenic not near genes chr3L 2013904 intergenic not near genes chr3L 2014024 intergenic not near genes chr3L_21_2010001 chr3L_2010001 RAL-395 1480 chr3L 2035107 2035304 chr3L 2035300 2035406 4 124 0.0 0.0 0.0 4.0 299 chr3L 2035107 intergenic not near genes chr3L 2035256 intergenic not near genes chr3L 2035406 intergenic not near genes chr3L_4_2035001 chr3L_2035001 RAL-395 1481 chr3L 2039373 2039397 chr3L 2039490 2039514 18 117 4.0 13.0 8.5 1.9 141 chr3L 2039373 intergenic sls - chr3L 2039444 intergenic sls - chr3L 2039514 intergenic sls - chr3L_18_2035001 chr3L_2035001 RAL-395 1482 chr3L 2108229 2108280 chr3L 2113459 2113510 copia 12 5229 8.5 7.5 8.0 1.3 5281 chr3L 2108229 intron sls - chr3L 2110870 intron sls - chr3L 2113510 intron sls - chr3L_12_2110001 chr3L_2110001 RAL-395 1483 chr3L 2163939 2164101 chr3L 2164062 2164274 22 151 0.5 0.0 0.2 18.3 335 chr3L 2163939 intergenic CG15822 - chr3L 2164106 intergenic CG15822 - chr3L 2164274 intergenic CG15822 - chr3L_22_2160001 chr3L_2160001 RAL-395 1484 chr3L 2168750 2168802 chr3L 2168867 2168919 33 117 11.5 7.0 9.2 3.2 169 chr3L 2168750 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168919 intron CG15879 - chr3L_33_2165001 chr3L_2165001 RAL-395 1485 chr3L 2199784 2199820 chr3L 2199886 2199922 19 102 5.0 6.5 5.8 2.8 138 chr3L 2199784 intergenic not near genes chr3L 2199853 intergenic not near genes chr3L 2199922 intergenic not near genes chr3L_19_2195001 chr3L_2195001 RAL-395 1486 chr3L 2200891 2200936 chr3L 2200993 2201038 22 102 8.5 8.0 8.2 2.4 147 chr3L 2200891 intergenic not near genes chr3L 2200964 intergenic not near genes chr3L 2201038 intergenic not near genes chr3L_22_2200001 chr3L_2200001 RAL-395 1487 chr3L 2300719 2300772 chr3L 2300836 2300889 20 117 5.0 4.5 4.8 3.4 170 chr3L 2300719 3` UTR MsR2 + chr3L 2300804 3` UTR MsR2 + chr3L 2300889 3` UTR MsR2 + chr3L_20_2300001 chr3L_2300001 RAL-395 1488 chr3L 2307977 2308034 chr3L 2308108 2308166 21 131 7.0 3.0 5.0 3.5 189 chr3L 2307977 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308166 intergenic not near genes chr3L_21_2305001 chr3L_2305001 RAL-395 1489 chr3L 2355420 2355464 chr3L 2355634 2355678 8 214 7.5 0.0 3.8 1.7 258 chr3L 2355420 intergenic not near genes chr3L 2355549 intergenic not near genes chr3L 2355678 intergenic not near genes chr3L_8_2355001 chr3L_2355001 RAL-395 1490 chr3L 2356060 2356101 chr3L 2356818 2356877 7 773 6.5 0.0 3.2 1.7 817 chr3L 2356060 intergenic not near genes chr3L 2356468 intergenic not near genes chr3L 2356877 intergenic not near genes chr3L_7_2355001 chr3L_2355001 RAL-395 1491 chr3L 2380318 2380371 chr3L 2380421 2380474 27 102 6.5 5.5 6.0 3.9 156 chr3L 2380318 intergenic not near genes chr3L 2380396 intergenic not near genes chr3L 2380474 intergenic not near genes chr3L_27_2380001 chr3L_2380001 RAL-395 1492 chr3L 2411316 2411343 chr3L 2411419 2411449 11 105 6.5 12.0 9.2 1.1 133 chr3L 2411316 intron CG45186 + chr3L 2411382 intron CG45186 + chr3L 2411449 intron CG45186 + chr3L_11_2410001 chr3L_2410001 RAL-395 1493 chr3L 2417775 2417798 chr3L 2417873 2417904 11 105 11.5 11.0 11.2 0.9 129 chr3L 2417775 intron CG45186 + chr3L 2417840 intron CG45186 + chr3L 2417904 intron CG45186 + chr3L_11_2415001 chr3L_2415001 RAL-395 1494 chr3L 2447484 2447531 chr3L 2456666 2456713 roo 37 9181 11.0 14.0 12.5 2.7 9229 chr3L 2447484 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456713 intron CG45186 + chr3L_37_2450001 chr3L_2450001 RAL-395 1495 chr3L 2467426 2467476 chr3L 2467549 2467599 9 123 8.0 0.0 4.0 1.8 173 chr3L 2467426 intron CG45186 + chr3L 2467512 intron CG45186 + chr3L 2467599 intron CG45186 + chr3L_9_2465001 chr3L_2465001 RAL-395 1496 chr3L 2480275 2480327 chr3L 2480401 2480453 28 125 5.5 4.0 4.8 4.8 178 chr3L 2480275 intron CG45186 + chr3L 2480364 intron CG45186 + chr3L 2480453 intron CG45186 + chr3L_28_2480001 chr3L_2480001 RAL-395 1497 chr3L 2482911 2482967 chr3L 2483029 2483085 26 118 7.0 5.0 6.0 3.7 174 chr3L 2482911 intron CG45186 + chr3L 2482998 intron CG45186 + chr3L 2483085 intron CG45186 + chr3L_26_2480001 chr3L_2480001 RAL-395 1498 chr3L 2515376 2515429 chr3L 2515484 2515537 14 108 3.5 10.0 6.8 1.8 161 chr3L 2515376 intron Spn - chr3L 2515456 intron Spn - chr3L 2515537 intron Spn - chr3L_14_2515001 chr3L_2515001 RAL-395 1499 chr3L 2521713 2521758 chr3L 2521888 2521933 14 175 7.0 0.0 3.5 3.1 220 chr3L 2521713 intron Spn - chr3L 2521823 intron Spn - chr3L 2521933 intron Spn - chr3L_14_2520001 chr3L_2520001 RAL-395 1500 chr3L 2561505 2561560 chr3L 2561608 2561663 18 103 5.0 5.5 5.2 2.9 158 chr3L 2561505 intron msn - chr3L 2561584 intron msn - chr3L 2561663 intron msn - chr3L_18_2560001 chr3L_2560001 RAL-395 1501 chr3L 2581872 2581912 chr3L 2581991 2582032 17 120 9.5 6.5 8.0 1.9 160 chr3L 2581872 intron msn - chr3L 2581952 intron msn - chr3L 2582032 intron msn - chr3L_17_2580001 chr3L_2580001 RAL-395 1502 chr3L 2590849 2590913 chr3L 2590971 2591038 20 124 5.5 4.0 4.8 3.4 189 chr3L 2590849 intron dos + chr3L 2590944 intron dos + chr3L 2591038 intron dos + chr3L_20_2590001 chr3L_2590001 RAL-395 1503 chr3L 2719514 2719560 chr3L 2719642 2719688 30 128 8.5 3.5 6.0 4.3 174 chr3L 2719514 3` UTR Mrtf - chr3L 2719601 3` UTR Mrtf - chr3L 2719688 3` UTR Mrtf - chr3L_30_2715001 chr3L_2715001 RAL-395 1504 chr3L 2751441 2751458 chr3L 2755762 2755779 F-element 11 4321 4.0 14.0 9.0 1.1 4338 chr3L 2751441 intron Mrtf - chr3L 2753610 intron Mrtf - chr3L 2755779 intron Mrtf - chr3L_11_2750001 chr3L_2750001 RAL-395 1505 chr3L 2795696 2795745 chr3L 2795845 2795894 21 148 4.0 6.5 5.2 3.4 198 chr3L 2795696 intron CG43444 - chr3L 2795795 intron CG43444 - chr3L 2795894 intron CG43444 - chr3L_21_2795001 chr3L_2795001 RAL-395 1506 chr3L 2834732 2834759 chr3L 2834919 2834947 9 188 9.0 6.0 7.5 1.1 215 chr3L 2834732 intron CG43444 - chr3L 2834840 intron CG43444 - chr3L 2834947 intron CG43444 - chr3L_9_2830001 chr3L_2830001 RAL-395 1507 chr3L 2863771 2863826 chr3L 2863877 2863932 11 105 3.0 6.0 4.5 2.0 161 chr3L 2863771 intron CG43444 - chr3L 2863852 intron CG43444 - chr3L 2863932 intron CG43444 - chr3L_11_2860001 chr3L_2860001 RAL-395 1508 chr3L 2883104 2883157 chr3L 2883232 2883276 41 124 7.5 10.0 8.8 4.2 172 chr3L 2883104 5` UTR CR44531 + chr3L 2883190 5` UTR CR44531 + chr3L 2883276 5` UTR CR44531 + chr3L_41_2880001 chr3L_2880001 RAL-395 1509 chr3L 2927813 2927868 chr3L 2936116 2936170 Tirant 24 8302 7.0 5.0 6.0 3.4 8357 chr3L 2927813 intron Shab + chr3L 2931992 intron Shab + chr3L 2936170 intron Shab + chr3L_24_2930001 chr3L_2930001 RAL-395 1510 chr3L 2966701 2966720 chr3L 2974151 2974171 mdg1 7 7451 8.5 4.0 6.2 1.0 7470 chr3L 2966701 intergenic not near genes chr3L 2970436 intergenic not near genes chr3L 2974171 intergenic not near genes chr3L_7_2970001 chr3L_2970001 RAL-395 1511 chr3L 2997392 2997448 chr3L 2997543 2997599 32 151 6.0 8.5 7.2 3.9 207 chr3L 2997392 intergenic not near genes chr3L 2997496 intergenic not near genes chr3L 2997599 intergenic not near genes chr3L_32_2995001 chr3L_2995001 RAL-395 1512 chr3L 3019526 3019572 chr3L 3019665 3019711 22 138 6.5 8.5 7.5 2.6 185 chr3L 3019526 intergenic not near genes chr3L 3019618 intergenic not near genes chr3L 3019711 intergenic not near genes chr3L_22_3015001 chr3L_3015001 RAL-395 1513 chr3L 3028315 3028319 chr3L 3028420 3028424 4 105 21.5 7.5 14.5 0.3 109 chr3L 3028315 intergenic not near genes chr3L 3028370 intergenic not near genes chr3L 3028424 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-395 1514 chr3L 3028320 3028373 chr3L 3028419 3028478 28 103 8.0 7.5 7.8 3.2 158 chr3L 3028320 intergenic not near genes chr3L 3028399 intergenic not near genes chr3L 3028478 intergenic not near genes chr3L_28_3025001 chr3L_3025001 RAL-395 1515 chr3L 3028981 3029018 chr3L 3029093 3029130 8 112 4.0 0.0 2.0 2.7 149 chr3L 3028981 intergenic not near genes chr3L 3029056 intergenic not near genes chr3L 3029130 intergenic not near genes chr3L_8_3025001 chr3L_3025001 RAL-395 1516 chr3L 3040311 3040354 chr3L 3042126 3042169 S-element 7 1815 5.5 5.0 5.2 1.1 1858 chr3L 3040311 3` UTR CG2162 + chr3L 3041240 intergenic not near genes chr3L 3042169 intergenic Jafrac2 + chr3L_7_3040001 chr3L_3040001 RAL-395 1517 chr3L 3061262 3061313 chr3L 3069871 3069922 Tirant 25 8606 7.5 12.5 10.0 2.3 8660 chr3L 3061262 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069922 intron CG32486 - chr3L_25_3065001 chr3L_3065001 RAL-395 1518 chr3L 3135865 3135923 chr3L 3136184 3136242 38 318 5.0 11.0 8.0 4.2 377 chr3L 3135865 intron CG11537 - chr3L 3136054 intron CG11537 - chr3L 3136242 intron CG11537 - chr3L_38_3135001 chr3L_3135001 RAL-395 1519 chr3L 3259821 3259830 chr3L 3259946 3259956 4 126 0.0 14.0 7.0 0.5 135 chr3L 3259821 intron ckd + chr3L 3259888 intron ckd + chr3L 3259956 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-395 1520 chr3L 3281418 3281469 chr3L 3281940 3281991 Doc 37 517 11.5 9.0 10.2 3.3 573 chr3L 3281418 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281991 intron CG12017 + chr3L_37_3280001 chr3L_3280001 RAL-395 1521 chr3L 3341238 3341297 chr3L 3341344 3341403 33 106 8.0 7.5 7.8 3.7 165 chr3L 3341238 intron kst + chr3L 3341320 intron kst + chr3L 3341403 intron kst + chr3L_33_3340001 chr3L_3340001 RAL-395 1522 chr3L 3392970 3393029 chr3L 3393079 3393138 14 108 2.0 1.0 1.5 5.6 168 chr3L 3392970 intergenic not near genes chr3L 3393054 intergenic not near genes chr3L 3393138 intergenic not near genes chr3L_14_3390001 chr3L_3390001 RAL-395 1523 chr3L 3434715 3434765 chr3L 3434817 3434867 25 101 7.0 4.5 5.8 3.7 152 chr3L 3434715 intron eIF5B - chr3L 3434791 intron eIF5B - chr3L 3434867 intron eIF5B - chr3L_25_3430001 chr3L_3430001 RAL-395 1524 chr3L 3436269 3436313 chr3L 3436374 3436418 18 105 6.0 8.5 7.2 2.2 149 chr3L 3436269 intron eIF5B - chr3L 3436344 intron eIF5B - chr3L 3436418 intron eIF5B - chr3L_18_3435001 chr3L_3435001 RAL-395 1525 chr3L 3456422 3456480 chr3L 3456789 3456846 29 366 5.5 11.0 8.2 3.2 424 chr3L 3456422 intron eIF5B - chr3L 3456634 intron eIF5B - chr3L 3456846 intron eIF5B - chr3L_29_3455001 chr3L_3455001 RAL-395 1526 chr3L 3470130 3470186 chr3L 3470232 3470288 14 102 0.5 7.5 4.0 2.8 158 chr3L 3470130 intron CG14971 - chr3L 3470209 intron CG14971 - chr3L 3470288 intron CG14971 - chr3L_14_3470001 chr3L_3470001 RAL-395 1527 chr3L 3475053 3475093 chr3L 3475523 3475562 jockey 28 470 10.0 14.0 12.0 2.2 509 chr3L 3475053 intron CG42324 + chr3L 3475308 intron CG42324 + chr3L 3475562 intron CG42324 + chr3L_28_3475001 chr3L_3475001 RAL-395 1528 chr3L 3512309 3512345 chr3L 3512451 3512485 28 142 15.0 16.0 15.5 1.7 176 chr3L 3512309 exon ImpE2 - chr3L 3512397 exon ImpE2 - chr3L 3512485 exon ImpE2 - chr3L_28_3510001 chr3L_3510001 RAL-395 1529 chr3L 3573142 3573190 chr3L 3573251 3573299 17 109 4.5 4.5 4.5 3.1 157 chr3L 3573142 intron Eip63E + chr3L 3573220 intron Eip63E + chr3L 3573299 intron Eip63E + chr3L_17_3570001 chr3L_3570001 RAL-395 1530 chr3L 3574673 3574731 chr3L 3574791 3574849 12 116 6.0 2.5 4.2 2.3 176 chr3L 3574673 intron Eip63E + chr3L 3574761 intron Eip63E + chr3L 3574849 intron Eip63E + chr3L_12_3570001 chr3L_3570001 RAL-395 1531 chr3L 3601277 3601330 chr3L 3606614 3606667 copia 34 5337 7.5 7.5 7.5 4.0 5390 chr3L 3601277 intron Eip63E + chr3L 3603972 intron Eip63E + chr3L 3606667 intron Eip63E + chr3L_34_3600001 chr3L_3600001 RAL-395 1532 chr3L 3627315 3627341 chr3L 3627433 3627459 11 118 9.0 0.0 4.5 2.0 144 chr3L 3627315 intron dar1 + chr3L 3627387 intron dar1 + chr3L 3627459 intron dar1 + chr3L_11_3625001 chr3L_3625001 RAL-395 1533 chr3L 3700082 3700137 chr3L 3700191 3700245 28 109 7.0 11.0 9.0 2.8 163 chr3L 3700082 intergenic not near genes chr3L 3700164 intergenic not near genes chr3L 3700245 intergenic not near genes chr3L_28_3700001 chr3L_3700001 RAL-395 1534 chr3L 3763730 3763753 chr3L 3763837 3763851 14 106 15.0 0.0 7.5 1.6 121 chr3L 3763730 intron CG32264 - chr3L 3763790 intron CG32264 - chr3L 3763851 intron CG32264 - chr3L_14_3760001 chr3L_3760001 RAL-395 1535 chr3L 3766713 3766741 chr3L 3766825 3766853 13 112 7.0 4.5 5.8 1.9 140 chr3L 3766713 intron CG32264 - chr3L 3766783 intron CG32264 - chr3L 3766853 intron CG32264 - chr3L_13_3765001 chr3L_3765001 RAL-395 1536 chr3L 3783244 3783264 chr3L 3783347 3783360 6 102 7.0 3.0 5.0 1.0 116 chr3L 3783244 intron CG32264 - chr3L 3783302 intron CG32264 - chr3L 3783360 intron CG32264 - chr3L_6_3780001 chr3L_3780001 RAL-395 1537 chr3L 3792998 3793053 chr3L 3793164 3793219 36 165 7.5 4.5 6.0 5.1 221 chr3L 3792998 intron CG32264 - chr3L 3793108 intron CG32264 - chr3L 3793219 intron CG32264 - chr3L_36_3790001 chr3L_3790001 RAL-395 1538 chr3L 3797234 3797264 chr3L 3797343 3797373 13 109 2.0 11.5 6.8 1.7 139 chr3L 3797234 intron CG32264 - chr3L 3797304 intron CG32264 - chr3L 3797373 intron CG32264 - chr3L_13_3795001 chr3L_3795001 RAL-395 1539 chr3L 3833714 3833770 chr3L 3833981 3834037 pogo 18 267 3.0 6.0 4.5 3.3 323 chr3L 3833714 intron enc + chr3L 3833876 intron enc + chr3L 3834037 intron enc + chr3L_18_3830001 chr3L_3830001 RAL-395 1540 chr3L 3877440 3877468 chr3L 3877588 3877617 7 149 0.0 4.5 2.2 2.2 177 chr3L 3877440 intergenic not near genes chr3L 3877528 intergenic not near genes chr3L 3877617 intergenic not near genes chr3L_7_3875001 chr3L_3875001 RAL-395 1541 chr3L 3890935 3890977 chr3L 3891042 3891084 17 107 9.5 0.0 4.8 2.9 149 chr3L 3890935 intergenic not near genes chr3L 3891010 intergenic not near genes chr3L 3891084 intergenic not near genes chr3L_17_3890001 chr3L_3890001 RAL-395 1542 chr3L 3926872 3926925 chr3L 3926981 3927034 17 109 4.0 6.0 5.0 2.8 162 chr3L 3926872 intron Eip63F-1 - chr3L 3926953 intron Eip63F-1 - chr3L 3927034 intron Eip63F-1 - chr3L_17_3925001 chr3L_3925001 RAL-395 1543 chr3L 3946166 3946223 chr3L 3946269 3946326 36 102 4.5 3.5 4.0 7.2 160 chr3L 3946166 3` UTR CG14982 + chr3L 3946246 3` UTR CG14982 + chr3L 3946326 3` UTR CG14982 + chr3L_36_3945001 chr3L_3945001 RAL-395 1544 chr3L 3953656 3953669 chr3L 3954034 3954049 9 380 15.5 1.0 8.2 1.0 393 chr3L 3953656 intergenic not near genes chr3L 3953852 intergenic CG12605 - chr3L 3954049 intergenic CG12605 - chr3L_9_3950001 chr3L_3950001 RAL-395 1545 chr3L 3956563 3956568 chr3L 3956667 3956672 4 104 4.0 18.0 11.0 0.3 109 chr3L 3956563 3` UTR CG12605 - chr3L 3956618 3` UTR CG12605 - chr3L 3956672 3` UTR CG12605 - chr3L_4_3955001 chr3L_3955001 RAL-395 1546 chr3L 3995009 3995027 chr3L 3995124 3995142 4 115 1.5 19.0 10.2 0.4 133 chr3L 3995009 intergenic not near genes chr3L 3995076 intergenic not near genes chr3L 3995142 intergenic not near genes chr3L_4_3995001 chr3L_3995001 RAL-395 1547 chr3L 4099455 4099493 chr3L 4099562 4099600 16 107 4.5 4.5 4.5 2.9 145 chr3L 4099455 intron CG14995 - chr3L 4099528 intron CG14995 - chr3L 4099600 intron CG14995 - chr3L_16_4095001 chr3L_4095001 RAL-395 1548 chr3L 4146804 4146838 chr3L 4146910 4146945 11 107 0.0 7.0 3.5 2.4 141 chr3L 4146804 intergenic not near genes chr3L 4146874 intergenic not near genes chr3L 4146945 intergenic not near genes chr3L_11_4145001 chr3L_4145001 RAL-395 1549 chr3L 4188160 4188207 chr3L 4188265 4188311 17 104 10.5 11.5 11.0 1.4 151 chr3L 4188160 intron CG18675 + chr3L 4188236 intron CG18675 + chr3L 4188311 intron CG18675 + chr3L_17_4185001 chr3L_4185001 RAL-395 1550 chr3L 4214512 4214548 chr3L 4214680 4214716 11 168 4.5 10.0 7.2 1.3 204 chr3L 4214512 intron CG43367 + chr3L 4214614 intron CG43367 + chr3L 4214716 intron CG43367 + chr3L_11_4210001 chr3L_4210001 RAL-395 1551 chr3L 4328730 4328761 chr3L 4336254 4336285 412 12 7524 4.5 16.5 10.5 1.0 7555 chr3L 4328730 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336285 exon Cip4 - chr3L_12_4330001 chr3L_4330001 RAL-395 1552 chr3L 4341333 4341335 chr3L 21448025 21448026 5 17106692 39.5 42.0 40.8 0.1 17106693 chr3L 4341333 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-395 1553 chr3L 4361020 4361026 chr3L 4362902 4362908 7 1882 0.0 12.5 6.2 1.0 1888 chr3L 4361020 intron Cip4 - chr3L 4361964 intron Cip4 - chr3L 4362908 intron Cip4 - chr3L_7_4360001 chr3L_4360001 RAL-395 1554 chr3L 4384879 4384920 chr3L 4384998 4385038 22 119 10.5 12.5 11.5 1.8 159 chr3L 4384879 5` UTR slow + chr3L 4384958 intron slow + chr3L 4385038 intron slow + chr3L_22_4380001 chr3L_4380001 RAL-395 1555 chr3L 4553574 4553628 chr3L 4553682 4553736 35 108 6.5 7.0 6.8 4.5 162 chr3L 4553574 intergenic CG11357 + chr3L 4553655 intergenic CG11357 + chr3L 4553736 intergenic CG11357 + chr3L_35_4550001 chr3L_4550001 RAL-395 1556 chr3L 4572604 4572657 chr3L 4573021 4573070 5 414 5.5 3.0 4.2 1.0 466 chr3L 4572604 intron CG42540 + chr3L 4572837 intron CG42540 + chr3L 4573070 intron CG42540 + chr3L_5_4570001 chr3L_4570001 RAL-395 1557 chr3L 4638745 4638790 chr3L 4638874 4638919 20 126 10.0 10.5 10.2 1.8 174 chr3L 4638745 intron axo - chr3L 4638832 intron axo - chr3L 4638919 intron axo - chr3L_20_4635001 chr3L_4635001 RAL-395 1558 chr3L 4668387 4668402 chr3L 4668787 4668802 8 400 5.5 10.5 8.0 0.9 415 chr3L 4668387 intron axo - chr3L 4668594 intron axo - chr3L 4668802 intron axo - chr3L_8_4665001 chr3L_4665001 RAL-395 1559 chr3L 4674129 4674185 chr3L 4674241 4674297 24 112 4.0 5.0 4.5 4.4 168 chr3L 4674129 intron axo - chr3L 4674213 intron axo - chr3L 4674297 intron axo - chr3L_24_4670001 chr3L_4670001 RAL-395 1560 chr3L 4685534 4685573 chr3L 4685933 4685973 9 400 5.0 4.5 4.8 1.6 439 chr3L 4685534 intron axo - chr3L 4685754 intron axo - chr3L 4685973 intron axo - chr3L_9_4685001 chr3L_4685001 RAL-395 1561 chr3L 4700165 4700212 chr3L 4700533 4700580 23 368 0.0 2.5 1.2 10.5 415 chr3L 4700165 intron RhoGEF64C + chr3L 4700372 intron RhoGEF64C + chr3L 4700580 intron RhoGEF64C + chr3L_23_4700001 chr3L_4700001 RAL-395 1562 chr3L 4713289 4713293 chr3L 4713389 4713395 6 102 24.0 0.0 12.0 0.5 106 chr3L 4713289 intron RhoGEF64C + chr3L 4713342 intron RhoGEF64C + chr3L 4713395 intron RhoGEF64C + chr3L_6_4710001 chr3L_4710001 RAL-395 1563 chr3L 4748681 4748729 chr3L 4748798 4748846 24 116 8.5 6.0 7.2 2.9 165 chr3L 4748681 intron RhoGEF64C + chr3L 4748764 intron RhoGEF64C + chr3L 4748846 intron RhoGEF64C + chr3L_24_4745001 chr3L_4745001 RAL-395 1564 chr3L 4767465 4767515 chr3L 4767564 4767618 34 103 8.0 9.5 8.8 3.5 153 chr3L 4767465 intron RhoGEF64C + chr3L 4767542 intron RhoGEF64C + chr3L 4767618 intron RhoGEF64C + chr3L_34_4765001 chr3L_4765001 RAL-395 1565 chr3L 4858282 4858335 chr3L 4858398 4858451 42 115 10.5 14.5 12.5 3.1 169 chr3L 4858282 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858451 intergenic not near genes chr3L_42_4855001 chr3L_4855001 RAL-395 1566 chr3L 4901102 4901160 chr3L 4907318 4907376 diver 17 6214 7.0 5.0 6.0 2.4 6274 chr3L 4901102 intergenic CG13704 + chr3L 4904239 intergenic not near genes chr3L 4907376 intergenic not near genes chr3L_17_4900001 chr3L_4900001 RAL-395 1567 chr3L 4923319 4923361 chr3L 4923445 4923487 15 126 3.0 8.5 5.8 2.2 168 chr3L 4923319 intergenic not near genes chr3L 4923403 intergenic not near genes chr3L 4923487 intergenic not near genes chr3L_15_4920001 chr3L_4920001 RAL-395 1568 chr3L 5034136 5034168 chr3L 5043314 5043346 roo 6 9176 12.0 0.0 6.0 0.9 9210 chr3L 5034136 intron Con - chr3L 5038741 intron Con - chr3L 5043346 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-395 1569 chr3L 5045431 5045477 chr3L 5050238 5050284 Doc 17 4807 10.0 5.5 7.8 1.9 4853 chr3L 5045431 intron Con - chr3L 5047858 intron Con - chr3L 5050284 intron Con - chr3L_17_5045001 chr3L_5045001 RAL-395 1570 chr3L 5063560 5063602 chr3L 5063692 5063736 20 135 0.0 8.0 4.0 4.0 176 chr3L 5063560 intron Con - chr3L 5063648 intron Con - chr3L 5063736 intron Con - chr3L_20_5060001 chr3L_5060001 RAL-395 1571 chr3L 5101186 5101230 chr3L 5101280 5101336 19 105 5.0 5.5 5.2 3.1 150 chr3L 5101186 intergenic not near genes chr3L 5101261 intergenic not near genes chr3L 5101336 intergenic not near genes chr3L_19_5100001 chr3L_5100001 RAL-395 1572 chr3L 5103587 5103607 chr3L 5103693 5103713 12 106 19.0 0.0 9.5 1.1 126 chr3L 5103587 intergenic not near genes chr3L 5103650 intergenic not near genes chr3L 5103713 intergenic not near genes chr3L_12_5100001 chr3L_5100001 RAL-395 1573 chr3L 5104460 5104510 chr3L 5124619 5124670 29 20160 4.5 8.5 6.5 3.9 20210 chr3L 5104460 intergenic not near genes chr3L 5114565 intergenic not near genes chr3L 5124670 intergenic not near genes chr3L_29_5110001 chr3L_5110001 RAL-395 1574 chr3L 5164610 5164670 chr3L 5164712 5164772 28 101 8.5 8.5 8.5 2.9 162 chr3L 5164610 intron shep - chr3L 5164691 intron shep - chr3L 5164772 intron shep - chr3L_28_5160001 chr3L_5160001 RAL-395 1575 chr3L 5196944 5197190 chr3L 5197051 5197339 10 120 0.0 6.0 3.0 2.5 395 chr3L 5196944 intron shep - chr3L 5197142 intron shep - chr3L 5197339 intron shep - chr3L_10_5195001 chr3L_5195001 RAL-395 1576 chr3L 5220802 5220859 chr3L 5220923 5220980 15 121 7.5 3.5 5.5 2.3 178 chr3L 5220802 intron shep - chr3L 5220891 intron shep - chr3L 5220980 intron shep - chr3L_15_5220001 chr3L_5220001 RAL-395 1577 chr3L 5250065 5250103 chr3L 5250169 5250207 15 103 0.5 11.0 5.8 2.2 142 chr3L 5250065 intron shep - chr3L 5250136 intron shep - chr3L 5250207 intron shep - chr3L_15_5250001 chr3L_5250001 RAL-395 1578 chr3L 5261138 5261172 chr3L 5261244 5261277 14 105 11.5 5.0 8.2 1.5 139 chr3L 5261138 intron shep - chr3L 5261208 intron shep - chr3L 5261277 intron shep - chr3L_14_5260001 chr3L_5260001 RAL-395 1579 chr3L 5271164 5271202 chr3L 5271268 5271296 9 103 0.0 0.0 0.0 9.0 132 chr3L 5271164 intron shep - chr3L 5271230 intron shep - chr3L 5271296 intron shep - chr3L_9_5270001 chr3L_5270001 RAL-395 1580 chr3L 5311929 5311957 chr3L 5312031 5312055 7 100 1.5 8.0 4.8 1.2 126 chr3L 5311929 intergenic not near genes chr3L 5311992 intergenic not near genes chr3L 5312055 intergenic not near genes chr3L_7_5310001 chr3L_5310001 RAL-395 1581 chr3L 5322864 5322872 chr3L 5322981 5322987 6 116 7.0 0.5 3.8 1.2 123 chr3L 5322864 intergenic not near genes chr3L 5322926 intergenic not near genes chr3L 5322987 intergenic not near genes chr3L_6_5320001 chr3L_5320001 RAL-395 1582 chr3L 5327449 5327475 chr3L 5327560 5327586 13 111 8.5 12.5 10.5 1.1 137 chr3L 5327449 intergenic not near genes chr3L 5327518 intergenic not near genes chr3L 5327586 intergenic not near genes chr3L_13_5325001 chr3L_5325001 RAL-395 1583 chr3L 5338807 5338823 chr3L 5338931 5338947 8 124 6.0 7.0 6.5 1.1 140 chr3L 5338807 intergenic not near genes chr3L 5338877 intergenic not near genes chr3L 5338947 intergenic not near genes chr3L_8_5335001 chr3L_5335001 RAL-395 1584 chr3L 5368830 5368834 chr3L 5368931 5368937 5 102 0.0 24.0 12.0 0.4 107 chr3L 5368830 intergenic not near genes chr3L 5368884 intergenic CR44515 + chr3L 5368937 intergenic CR44515 + chr3L_5_5365001 chr3L_5365001 RAL-395 1585 chr3L 5393448 5393453 chr3L 5393636 5393641 7 188 12.0 0.0 6.0 1.0 193 chr3L 5393448 intergenic not near genes chr3L 5393544 intergenic not near genes chr3L 5393641 intergenic not near genes chr3L_7_5390001 chr3L_5390001 RAL-395 1586 chr3L 5396444 5396499 chr3L 5396557 5396612 14 113 6.0 5.0 5.5 2.2 168 chr3L 5396444 intergenic not near genes chr3L 5396528 intergenic not near genes chr3L 5396612 intergenic not near genes chr3L_14_5395001 chr3L_5395001 RAL-395 1587 chr3L 5421827 5421841 chr3L 5421948 5421962 10 121 12.5 12.0 12.2 0.8 135 chr3L 5421827 intergenic not near genes chr3L 5421894 intergenic not near genes chr3L 5421962 intergenic not near genes chr3L_10_5420001 chr3L_5420001 RAL-395 1588 chr3L 5449507 5449563 chr3L 5449612 5449668 18 104 3.0 7.5 5.2 2.9 161 chr3L 5449507 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449668 intergenic not near genes chr3L_18_5445001 chr3L_5445001 RAL-395 1589 chr3L 5482930 5482950 chr3L 5483165 5483185 11 234 15.5 53.0 34.2 0.3 255 chr3L 5482930 exon CG4835 + chr3L 5483058 exon CG4835 + chr3L 5483185 exon CG4835 + chr3L_11_5480001 chr3L_5480001 RAL-395 1590 chr3L 5485021 5485075 chr3L 5485129 5485183 30 108 9.0 6.0 7.5 3.5 162 chr3L 5485021 intergenic not near genes chr3L 5485102 intergenic not near genes chr3L 5485183 intergenic not near genes chr3L_30_5485001 chr3L_5485001 RAL-395 1591 chr3L 5530364 5530415 chr3L 5530477 5530528 32 113 9.0 11.5 10.2 2.9 164 chr3L 5530364 intergenic not near genes chr3L 5530446 intergenic not near genes chr3L 5530528 intergenic not near genes chr3L_32_5530001 chr3L_5530001 RAL-395 1592 chr3L 5537694 5537738 chr3L 5538062 5538106 jockey 27 368 7.5 5.5 6.5 3.6 412 chr3L 5537694 intergenic not near genes chr3L 5537900 intergenic not near genes chr3L 5538106 intergenic CG10625 - chr3L_27_5535001 chr3L_5535001 RAL-395 1593 chr3L 5561647 5561697 chr3L 5561755 5561805 9 108 4.0 6.0 5.0 1.5 158 chr3L 5561647 intergenic sinu -,Sucb - chr3L 5561726 3` UTR Sucb - chr3L 5561805 3` UTR Sucb - chr3L_9_5560001 chr3L_5560001 RAL-395 1594 chr3L 5572112 5572158 chr3L 5572248 5572294 26 135 10.0 9.0 9.5 2.5 182 chr3L 5572112 intron Msr-110 - chr3L 5572203 intron Msr-110 - chr3L 5572294 intron Msr-110 - chr3L_26_5570001 chr3L_5570001 RAL-395 1595 chr3L 5613357 5613502 chr3L 5613493 5613655 10 164 0.0 0.0 0.0 10.0 298 chr3L 5613357 intergenic not near genes chr3L 5613506 intergenic not near genes chr3L 5613655 intergenic not near genes chr3L_10_5610001 chr3L_5610001 RAL-395 1596 chr3L 5747433 5747472 chr3L 5747544 5747583 15 111 4.5 7.5 6.0 2.1 150 chr3L 5747433 3` UTR sif + chr3L 5747508 3` UTR sif + chr3L 5747583 3` UTR sif + chr3L_15_5745001 chr3L_5745001 RAL-395 1597 chr3L 5886380 5886427 chr3L 5886486 5886533 22 105 11.5 12.5 12.0 1.7 153 chr3L 5886380 intergenic not near genes chr3L 5886456 intergenic not near genes chr3L 5886533 intergenic not near genes chr3L_22_5885001 chr3L_5885001 RAL-395 1598 chr3L 5910009 5910048 chr3L 5910276 5910315 pogo 16 267 10.5 10.0 10.2 1.4 306 chr3L 5910009 intron CG13288 + chr3L 5910162 intron CG13288 + chr3L 5910315 intron CG13288 + chr3L_16_5910001 chr3L_5910001 RAL-395 1599 chr3L 5926296 5926341 chr3L 5926512 5926557 BS 21 215 7.5 14.0 10.8 1.8 261 chr3L 5926296 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926557 intron Vap-33B + chr3L_21_5925001 chr3L_5925001 RAL-395 1600 chr3L 5946047 5946077 chr3L 5946150 5946180 17 103 12.0 11.5 11.8 1.3 133 chr3L 5946047 intron CG33993 - chr3L 5946114 intron CG33993 - chr3L 5946180 intron CG33993 - chr3L_17_5945001 chr3L_5945001 RAL-395 1601 chr3L 6001659 6001711 chr3L 6004384 6004437 jockey 15 2726 8.5 1.0 4.8 2.6 2778 chr3L 6001659 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004437 intron PVRAP + chr3L_15_6000001 chr3L_6000001 RAL-395 1602 chr3L 6022219 6022233 chr3L 6022329 6022343 7 110 18.0 0.0 9.0 0.7 124 chr3L 6022219 intron PVRAP + chr3L 6022281 intron PVRAP + chr3L 6022343 intron PVRAP + chr3L_7_6020001 chr3L_6020001 RAL-395 1603 chr3L 6022234 6022272 chr3L 6022325 6022375 26 107 6.0 0.0 3.0 6.5 141 chr3L 6022234 intron PVRAP + chr3L 6022304 intron PVRAP + chr3L 6022375 intron PVRAP + chr3L_26_6020001 chr3L_6020001 RAL-395 1604 chr3L 6040342 6040394 chr3L 6042724 6042776 Doc 20 2382 7.0 9.0 8.0 2.2 2434 chr3L 6040342 intergenic Jon65Aiv + chr3L 6041559 intergenic not near genes chr3L 6042776 intergenic not near genes chr3L_20_6040001 chr3L_6040001 RAL-395 1605 chr3L 6052632 6052662 chr3L 6052743 6052773 22 109 15.5 27.5 21.5 1.0 141 chr3L 6052632 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052773 exon Jon65Aii + chr3L_22_6050001 chr3L_6050001 RAL-395 1606 chr3L 6065010 6065045 chr3L 6065100 6065148 5 100 7.0 5.0 6.0 0.7 138 chr3L 6065010 intergenic not near genes chr3L 6065079 intergenic not near genes chr3L 6065148 intergenic not near genes chr3L_5_6065001 chr3L_6065001 RAL-395 1607 chr3L 6116669 6116705 chr3L 6116779 6116816 6 108 8.5 0.0 4.2 1.2 147 chr3L 6116669 intron Ets65A + chr3L 6116742 intron Ets65A + chr3L 6116816 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-395 1608 chr3L 6155693 6155713 chr3L 6155805 6155825 10 112 8.5 4.0 6.2 1.4 132 chr3L 6155693 intergenic CR45421 - chr3L 6155759 intergenic not near genes chr3L 6155825 intergenic not near genes chr3L_10_6155001 chr3L_6155001 RAL-395 1609 chr3L 6220898 6220945 chr3L 6230076 6230114 roo 25 9177 11.0 16.0 13.5 1.7 9216 chr3L 6220898 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230114 intergenic not near genes chr3L_25_6225001 chr3L_6225001 RAL-395 1610 chr3L 6268100 6268132 chr3L 6268302 6268334 14 202 6.0 14.0 10.0 1.3 234 chr3L 6268100 intergenic not near genes chr3L 6268217 intergenic not near genes chr3L 6268334 intergenic not near genes chr3L_14_6265001 chr3L_6265001 RAL-395 1611 chr3L 6334982 6335038 chr3L 6335479 6335535 297 27 497 7.0 6.0 6.5 3.6 553 chr3L 6334982 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335535 intron CG13300 - chr3L_27_6335001 chr3L_6335001 RAL-395 1612 chr3L 6362361 6362405 chr3L 6362464 6362508 14 103 4.5 2.5 3.5 3.1 147 chr3L 6362361 intergenic not near genes chr3L 6362434 intergenic not near genes chr3L 6362508 intergenic not near genes chr3L_14_6360001 chr3L_6360001 RAL-395 1613 chr3L 6405638 6405685 chr3L 6432128 6432175 roo 12 26490 9.5 9.0 9.2 1.2 26537 chr3L 6405638 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432175 intron CG42747 + chr3L_12_6415001 chr3L_6415001 RAL-395 1614 chr3L 6465994 6466054 chr3L 6466105 6466165 25 110 6.0 6.5 6.2 3.5 171 chr3L 6465994 intron CG42747 + chr3L 6466080 intron CG42747 + chr3L 6466165 intron CG42747 + chr3L_25_6465001 chr3L_6465001 RAL-395 1615 chr3L 6620588 6620605 chr3L 6621054 6621062 Rt1c 9 465 4.5 16.5 10.5 0.8 474 chr3L 6620588 intergenic not near genes chr3L 6620825 intergenic not near genes chr3L 6621062 intergenic not near genes chr3L_9_6620001 chr3L_6620001 RAL-395 1616 chr3L 6652054 6652110 chr3L 6652158 6652214 38 102 5.5 8.5 7.0 4.8 160 chr3L 6652054 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652214 intergenic not near genes chr3L_38_6650001 chr3L_6650001 RAL-395 1617 chr3L 6654442 6654455 chr3L 6654606 6654636 6 178 0.0 6.0 3.0 1.5 194 chr3L 6654442 intergenic not near genes chr3L 6654539 intergenic not near genes chr3L 6654636 intergenic not near genes chr3L_6_6650001 chr3L_6650001 RAL-395 1618 chr3L 6729265 6729323 chr3L 6729373 6729430 29 107 6.0 4.5 5.2 4.7 165 chr3L 6729265 3` UTR dikar - chr3L 6729348 3` UTR dikar - chr3L 6729430 3` UTR dikar - chr3L_29_6725001 chr3L_6725001 RAL-395 1619 chr3L 6781097 6781147 chr3L 6783136 6783183 Doc 12 2038 6.5 0.0 3.2 2.9 2086 chr3L 6781097 intergenic not near genes chr3L 6782140 intergenic not near genes chr3L 6783183 intergenic not near genes chr3L_12_6780001 chr3L_6780001 RAL-395 1620 chr3L 6820616 6820631 chr3L 6820726 6820742 6 110 8.5 9.5 9.0 0.6 126 chr3L 6820616 intergenic not near genes chr3L 6820679 intergenic not near genes chr3L 6820742 intergenic not near genes chr3L_6_6820001 chr3L_6820001 RAL-395 1621 chr3L 6835904 6835924 chr3L 6836008 6836028 11 104 7.5 7.0 7.2 1.3 124 chr3L 6835904 intergenic not near genes chr3L 6835966 intergenic not near genes chr3L 6836028 intergenic not near genes chr3L_11_6835001 chr3L_6835001 RAL-395 1622 chr3L 6855910 6855946 chr3L 6860720 6860741 Doc 22 4809 6.5 13.5 10.0 2.0 4831 chr3L 6855910 intergenic not near genes chr3L 6858326 intergenic not near genes chr3L 6860741 intergenic not near genes chr3L_22_6855001 chr3L_6855001 RAL-395 1623 chr3L 6887501 6887549 chr3L 6895019 6895067 roo 22 7518 8.5 3.0 5.8 3.2 7566 chr3L 6887501 intergenic not near genes chr3L 6891284 intergenic not near genes chr3L 6895067 intergenic not near genes chr3L_22_6890001 chr3L_6890001 RAL-395 1624 chr3L 6907988 6908044 chr3L 6908099 6908148 16 107 8.0 0.0 4.0 3.2 160 chr3L 6907988 intergenic not near genes chr3L 6908068 intergenic not near genes chr3L 6908148 intergenic not near genes chr3L_16_6905001 chr3L_6905001 RAL-395 1625 chr3L 6934325 6934340 chr3L 6934462 6934477 4 137 14.0 6.0 10.0 0.4 152 chr3L 6934325 exon CG14820 + chr3L 6934401 intron CG14820 + chr3L 6934477 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-395 1626 chr3L 6974484 6974523 chr3L 6974611 6974649 19 126 5.5 13.0 9.2 1.9 165 chr3L 6974484 intron Galphai - chr3L 6974566 intron Galphai - chr3L 6974649 intron Galphai - chr3L_19_6970001 chr3L_6970001 RAL-395 1627 chr3L 6994887 6994912 chr3L 6995524 6995549 BS 12 637 0.0 14.0 7.0 1.5 662 chr3L 6994887 intergenic bin + chr3L 6995218 intergenic not near genes chr3L 6995549 intergenic not near genes chr3L_12_6995001 chr3L_6995001 RAL-395 1628 chr3L 7007356 7007363 chr3L 7007483 7007490 6 127 9.5 3.5 6.5 0.8 134 chr3L 7007356 intron Mp + chr3L 7007423 intron Mp + chr3L 7007490 intron Mp + chr3L_6_7005001 chr3L_7005001 RAL-395 1629 chr3L 7007364 7007401 chr3L 7007478 7007525 10 125 7.0 3.5 5.2 1.6 161 chr3L 7007364 intron Mp + chr3L 7007444 intron Mp + chr3L 7007525 intron Mp + chr3L_10_7005001 chr3L_7005001 RAL-395 1630 chr3L 7013433 7013469 chr3L 7013547 7013598 5 120 3.5 0.0 1.8 1.8 165 chr3L 7013433 intron Mp + chr3L 7013516 intron Mp + chr3L 7013598 intron Mp + chr3L_5_7010001 chr3L_7010001 RAL-395 1631 chr3L 7033154 7033203 chr3L 7033260 7033311 34 104 7.5 10.5 9.0 3.4 157 chr3L 7033154 intron Mp + chr3L 7033232 intron Mp + chr3L 7033311 intron Mp + chr3L_34_7030001 chr3L_7030001 RAL-395 1632 chr3L 7041897 7041924 chr3L 7042001 7042028 6 104 8.0 6.5 7.2 0.7 131 chr3L 7041897 intron Mp + chr3L 7041962 intron Mp + chr3L 7042028 intron Mp + chr3L_6_7040001 chr3L_7040001 RAL-395 1633 chr3L 7112558 7112608 chr3L 7112670 7112721 20 112 9.0 7.0 8.0 2.2 163 chr3L 7112558 intron form3 + chr3L 7112640 intron form3 + chr3L 7112721 intron form3 + chr3L_20_7110001 chr3L_7110001 RAL-395 1634 chr3L 7129920 7129980 chr3L 7130138 7130198 BS 11 218 4.0 6.5 5.2 1.8 278 chr3L 7129920 intergenic CG15829 + chr3L 7130059 intergenic CG15829 + chr3L 7130198 intergenic not near genes chr3L_11_7130001 chr3L_7130001 RAL-395 1635 chr3L 7149469 7149493 chr3L 7149591 7149617 11 120 7.5 26.0 16.8 0.6 148 chr3L 7149469 intron corn - chr3L 7149543 intron corn - chr3L 7149617 intron corn - chr3L_11_7145001 chr3L_7145001 RAL-395 1636 chr3L 7260318 7260333 chr3L 7260658 7260673 12 340 13.0 6.5 9.8 1.1 355 chr3L 7260318 intron CG14830 - chr3L 7260496 intron CG14830 - chr3L 7260673 intron CG14830 - chr3L_12_7260001 chr3L_7260001 RAL-395 1637 chr3L 7276158 7276178 chr3L 7276265 7276286 11 108 5.0 19.0 12.0 0.8 128 chr3L 7276158 intron unc-13-4A - chr3L 7276222 intron unc-13-4A - chr3L 7276286 intron unc-13-4A - chr3L_11_7275001 chr3L_7275001 RAL-395 1638 chr3L 7300638 7300659 chr3L 7300747 7300768 14 108 16.0 21.5 18.8 0.7 130 chr3L 7300638 intron unc-13-4A - chr3L 7300703 intron unc-13-4A - chr3L 7300768 intron unc-13-4A - chr3L_14_7300001 chr3L_7300001 RAL-395 1639 chr3L 7377291 7377343 chr3L 7380422 7380474 297 14 3131 4.0 8.5 6.2 1.9 3183 chr3L 7377291 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380474 intron SMSr - chr3L_14_7375001 chr3L_7375001 RAL-395 1640 chr3L 7460345 7460399 chr3L 7460455 7460496 18 109 2.5 5.0 3.8 3.8 151 chr3L 7460345 intergenic not near genes chr3L 7460420 intergenic not near genes chr3L 7460496 intergenic not near genes chr3L_18_7460001 chr3L_7460001 RAL-395 1641 chr3L 7462958 7462987 chr3L 7463063 7463092 8 104 2.5 10.0 6.2 1.1 134 chr3L 7462958 intergenic not near genes chr3L 7463025 intergenic not near genes chr3L 7463092 intergenic not near genes chr3L_8_7460001 chr3L_7460001 RAL-395 1642 chr3L 7464831 7464891 chr3L 7464934 7464994 25 103 5.5 4.5 5.0 4.2 163 chr3L 7464831 intergenic not near genes chr3L 7464912 intergenic not near genes chr3L 7464994 intergenic not near genes chr3L_25_7460001 chr3L_7460001 RAL-395 1643 chr3L 7498739 7498750 chr3L 7503542 7503552 F-element 8 4803 12.5 7.5 10.0 0.7 4813 chr3L 7498739 5` UTR CG8539 - chr3L 7501146 intergenic not near genes chr3L 7503552 intergenic not near genes chr3L_8_7500001 chr3L_7500001 RAL-395 1644 chr3L 7498753 7498775 chr3L 7503540 7503578 F-element 7 4801 8.5 6.0 7.2 0.9 4825 chr3L 7498753 5` UTR CG8539 - chr3L 7501166 intergenic not near genes chr3L 7503578 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-395 1645 chr3L 7505406 7505440 chr3L 7505508 7505542 14 102 0.0 13.0 6.5 1.9 136 chr3L 7505406 intergenic CG7548 - chr3L 7505474 intergenic CG7548 - chr3L 7505542 3` UTR CG7548 - chr3L_14_7505001 chr3L_7505001 RAL-395 1646 chr3L 7508652 7508704 chr3L 7508762 7508814 17 109 6.0 0.5 3.2 4.0 162 chr3L 7508652 intergenic not near genes chr3L 7508733 intergenic not near genes chr3L 7508814 intergenic not near genes chr3L_17_7505001 chr3L_7505001 RAL-395 1647 chr3L 7591119 7591126 chr3L 7591236 7591243 5 117 20.0 9.0 14.5 0.3 124 chr3L 7591119 intergenic CG7716 - chr3L 7591181 intergenic CG7716 - chr3L 7591243 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-395 1648 chr3L 7591127 7591180 chr3L 7591235 7591297 41 116 6.0 8.5 7.2 5.0 170 chr3L 7591127 intergenic CG7716 - chr3L 7591212 intergenic CG7716 - chr3L 7591297 intergenic CG7716 - chr3L_41_7590001 chr3L_7590001 RAL-395 1649 chr3L 7711809 7711855 chr3L 7711910 7711957 20 102 3.5 13.0 8.2 2.2 148 chr3L 7711809 intron,intron CG32373 +,Ank2 - chr3L 7711883 intron,intron CG32373 +,Ank2 - chr3L 7711957 intron,intron CG32373 +,Ank2 - chr3L_20_7710001 chr3L_7710001 RAL-395 1650 chr3L 7793691 7793734 chr3L 7800768 7800812 297 20 7077 12.5 8.5 10.5 1.7 7121 chr3L 7793691 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800812 intron CG32369 - chr3L_20_7795001 chr3L_7795001 RAL-395 1651 chr3L 7803099 7803121 chr3L 7803203 7803223 8 103 15.0 3.5 9.2 0.8 124 chr3L 7803099 intron CG32369 - chr3L 7803161 intron CG32369 - chr3L 7803223 intron CG32369 - chr3L_8_7800001 chr3L_7800001 RAL-395 1652 chr3L 7845360 7845397 chr3L 7845469 7845504 13 107 7.5 3.5 5.5 2.0 144 chr3L 7845360 intron Pdp1 - chr3L 7845432 intron Pdp1 - chr3L 7845504 intron Pdp1 - chr3L_13_7845001 chr3L_7845001 RAL-395 1653 chr3L 7865545 7865584 chr3L 7865706 7865749 6 165 5.5 0.5 3.0 1.5 204 chr3L 7865545 intron Pdp1 - chr3L 7865647 intron Pdp1 - chr3L 7865749 intron Pdp1 - chr3L_6_7865001 chr3L_7865001 RAL-395 1654 chr3L 7886496 7886542 chr3L 7889040 7889086 Stalker4 26 2544 7.0 8.0 7.5 3.1 2590 chr3L 7886496 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889086 intron CG32365 + chr3L_26_7885001 chr3L_7885001 RAL-395 1655 chr3L 7916806 7916852 chr3L 7926003 7926049 roo 20 9197 5.0 7.5 6.2 2.8 9243 chr3L 7916806 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926049 3` UTR syd - chr3L_20_7920001 chr3L_7920001 RAL-395 1656 chr3L 7985344 7985390 chr3L 7987698 7987744 NOF 32 2354 8.0 11.0 9.5 3.0 2400 chr3L 7985344 intron nmo + chr3L 7986544 intron nmo + chr3L 7987744 intron nmo + chr3L_32_7985001 chr3L_7985001 RAL-395 1657 chr3L 8062823 8062850 chr3L 8062926 8062953 9 103 5.0 10.0 7.5 1.1 130 chr3L 8062823 intergenic not near genes chr3L 8062888 intergenic not near genes chr3L 8062953 intergenic not near genes chr3L_9_8060001 chr3L_8060001 RAL-395 1658 chr3L 8081252 8081306 chr3L 8081381 8081435 15 129 10.5 5.5 8.0 1.7 183 chr3L 8081252 intron Ect4 + chr3L 8081344 intron Ect4 + chr3L 8081435 intron Ect4 + chr3L_15_8080001 chr3L_8080001 RAL-395 1659 chr3L 8102589 8102641 chr3L 8102757 8102784 31 167 10.0 7.0 8.5 3.3 195 chr3L 8102589 intron Ect4 + chr3L 8102686 intron Ect4 + chr3L 8102784 intron Ect4 + chr3L_31_8100001 chr3L_8100001 RAL-395 1660 chr3L 8149746 8149776 chr3L 8149866 8149908 12 131 7.0 5.5 6.2 1.7 162 chr3L 8149746 intron CG13676 - chr3L 8149827 intron CG13676 - chr3L 8149908 intron CG13676 - chr3L_12_8145001 chr3L_8145001 RAL-395 1661 chr3L 8165939 8165993 chr3L 8166049 8166102 11 109 8.0 2.5 5.2 1.8 163 chr3L 8165939 intergenic CG13675 - chr3L 8166020 intergenic not near genes chr3L 8166102 intergenic not near genes chr3L_11_8165001 chr3L_8165001 RAL-395 1662 chr3L 8210779 8210808 chr3L 8210920 8210949 18 141 12.0 6.0 9.0 1.8 170 chr3L 8210779 intergenic CG32364 - chr3L 8210864 intergenic CG32364 - chr3L 8210949 intergenic CG32364 - chr3L_18_8210001 chr3L_8210001 RAL-395 1663 chr3L 8214707 8214760 chr3L 8214819 8214872 23 112 6.0 8.5 7.2 2.8 165 chr3L 8214707 intergenic not near genes chr3L 8214790 intergenic CG8012 + chr3L 8214872 intergenic CG8012 + chr3L_23_8210001 chr3L_8210001 RAL-395 1664 chr3L 8232213 8232271 chr3L 8232322 8232380 39 108 7.5 5.5 6.5 5.2 167 chr3L 8232213 intron CG7213 - chr3L 8232296 intron CG7213 - chr3L 8232380 intron CG7213 - chr3L_39_8230001 chr3L_8230001 RAL-395 1665 chr3L 8233568 8233590 chr3L 8238855 8238869 Rt1a 20 5287 4.0 18.0 11.0 1.7 5301 chr3L 8233568 intron CG7213 - chr3L 8236218 intron CG7213 - chr3L 8238869 intron,intron CG7213 -,Dscam4 + chr3L_20_8235001 chr3L_8235001 RAL-395 1666 chr3L 8274816 8274823 chr3L 8274953 8274963 5 139 14.5 0.0 7.2 0.6 147 chr3L 8274816 intron Dscam4 + chr3L 8274890 intron Dscam4 + chr3L 8274963 intron Dscam4 + chr3L_5_8270001 chr3L_8270001 RAL-395 1667 chr3L 8363707 8363760 chr3L 8363811 8363868 4 106 7.0 0.0 3.5 0.9 161 chr3L 8363707 intergenic not near genes chr3L 8363788 intergenic not near genes chr3L 8363868 intergenic not near genes chr3L_4_8360001 chr3L_8360001 RAL-395 1668 chr3L 8369251 8369281 chr3L 8370609 8370638 6 1358 40.5 49.0 44.8 0.1 1387 chr3L 8369251 intergenic not near genes chr3L 8369944 intergenic not near genes chr3L 8370638 intergenic not near genes chr3L_6_8365001 chr3L_8365001 RAL-395 1669 chr3L 8395246 8395253 chr3L 8395786 8395793 7 540 0.0 18.5 9.2 0.7 547 chr3L 8395246 intergenic not near genes chr3L 8395520 intergenic CG7120 + chr3L 8395793 intergenic CG7120 + chr3L_7_8395001 chr3L_8395001 RAL-395 1670 chr3L 8395808 8395862 chr3L 8395930 8395984 33 122 8.5 7.0 7.8 3.7 176 chr3L 8395808 intergenic CG7120 + chr3L 8395896 intergenic CG7120 + chr3L 8395984 intergenic CG7120 + chr3L_33_8395001 chr3L_8395001 RAL-395 1671 chr3L 8443543 8443576 chr3L 8443650 8443684 7 108 6.5 6.5 6.5 0.9 141 chr3L 8443543 3` UTR CG6983 - chr3L 8443614 3` UTR CG6983 - chr3L 8443684 3` UTR CG6983 - chr3L_7_8440001 chr3L_8440001 RAL-395 1672 chr3L 8456447 8456489 chr3L 8456568 8456608 24 118 14.0 13.5 13.8 1.6 161 chr3L 8456447 intron Gug + chr3L 8456528 intron Gug + chr3L 8456608 intron Gug + chr3L_24_8455001 chr3L_8455001 RAL-395 1673 chr3L 8481749 8481776 chr3L 8490934 8490960 roo 16 9185 16.5 7.0 11.8 1.2 9211 chr3L 8481749 intron CG43163 - chr3L 8486354 intron CG43163 - chr3L 8490960 intron CG43163 - chr3L_16_8485001 chr3L_8485001 RAL-395 1674 chr3L 8481777 8481789 chr3L 8490932 8490974 roo 6 9179 10.5 6.5 8.5 0.6 9197 chr3L 8481777 intron CG43163 - chr3L 8486376 intron CG43163 - chr3L 8490974 intron CG43163 - chr3L_6_8485001 chr3L_8485001 RAL-395 1675 chr3L 8498272 8498325 chr3L 8505765 8505818 blood 21 7493 8.5 9.0 8.8 2.1 7546 chr3L 8498272 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505818 intron CG43163 - chr3L_21_8500001 chr3L_8500001 RAL-395 1676 chr3L 8519448 8519492 chr3L 8519858 8519879 24 408 11.0 8.5 9.8 2.2 431 chr3L 8519448 intron GstO3 + chr3L 8519664 exon GstO3 + chr3L 8519879 exon GstO3 + chr3L_24_8515001 chr3L_8515001 RAL-395 1677 chr3L 8546009 8546063 chr3L 8546120 8546173 15 111 10.0 6.0 8.0 1.7 164 chr3L 8546009 intron rhea + chr3L 8546091 intron rhea + chr3L 8546173 intron rhea + chr3L_15_8545001 chr3L_8545001 RAL-395 1678 chr3L 8548626 8548647 chr3L 8548729 8548749 12 103 15.0 9.5 12.2 0.9 123 chr3L 8548626 intron rhea + chr3L 8548688 intron rhea + chr3L 8548749 intron rhea + chr3L_12_8545001 chr3L_8545001 RAL-395 1679 chr3L 8548649 8548683 chr3L 8548728 8548786 24 101 8.0 9.5 8.8 2.4 137 chr3L 8548649 intron rhea + chr3L 8548718 intron rhea + chr3L 8548786 intron rhea + chr3L_24_8545001 chr3L_8545001 RAL-395 1680 chr3L 8584421 8584466 chr3L 8585117 8585162 24 695 12.5 7.5 10.0 2.2 741 chr3L 8584421 intron CG43078 + chr3L 8584792 intron CG43078 + chr3L 8585162 intron CG43078 + chr3L_24_8580001 chr3L_8580001 RAL-395 1681 chr3L 8721180 8721216 chr3L 8721304 8721342 16 125 8.5 0.0 4.2 3.1 162 chr3L 8721180 5` UTR CG32022 - chr3L 8721261 5` UTR CG32022 - chr3L 8721342 5` UTR CG6511 + chr3L_16_8720001 chr3L_8720001 RAL-395 1682 chr3L 8751684 8751701 chr3L 8751790 8751807 17 106 6.0 21.5 13.8 1.1 123 chr3L 8751684 intergenic CR44527 - chr3L 8751746 intergenic CR44527 - chr3L 8751807 intergenic CR44527 - chr3L_17_8750001 chr3L_8750001 RAL-395 1683 chr3L 8782100 8782151 chr3L 8782252 8782303 23 152 0.5 5.5 3.0 5.8 203 chr3L 8782100 intron Fhos + chr3L 8782202 intron Fhos + chr3L 8782303 intron Fhos + chr3L_23_8780001 chr3L_8780001 RAL-395 1684 chr3L 8784840 8784864 chr3L 8784948 8784973 17 109 6.5 7.0 6.8 2.2 133 chr3L 8784840 intron Fhos + chr3L 8784906 intron Fhos + chr3L 8784973 intron Fhos + chr3L_17_8780001 chr3L_8780001 RAL-395 1685 chr3L 8791257 8791309 chr3L 8796703 8796754 I-element 10 5444 7.5 0.0 3.8 2.1 5497 chr3L 8791257 exon Fhos + chr3L 8794006 intron Fhos + chr3L 8796754 intron Fhos + chr3L_10_8790001 chr3L_8790001 RAL-395 1686 chr3L 8822071 8822114 chr3L 8822279 8822330 9 214 8.5 8.0 8.2 1.0 259 chr3L 8822071 intergenic not near genes chr3L 8822200 intergenic not near genes chr3L 8822330 intergenic not near genes chr3L_9_8820001 chr3L_8820001 RAL-395 1687 chr3L 8839718 8839750 chr3L 8839824 8839856 11 106 7.0 7.5 7.2 1.3 138 chr3L 8839718 intron dally + chr3L 8839787 intron dally + chr3L 8839856 intron dally + chr3L_11_8835001 chr3L_8835001 RAL-395 1688 chr3L 8849192 8849239 chr3L 8849298 8849314 16 104 7.5 4.0 5.8 2.4 122 chr3L 8849192 intron dally + chr3L 8849253 intron dally + chr3L 8849314 intron dally + chr3L_16_8845001 chr3L_8845001 RAL-395 1689 chr3L 8949386 8949501 chr3L 8949509 8949608 13 124 0.0 0.0 0.0 13.0 222 chr3L 8949386 intron,intron CG43783 -,orb2 - chr3L 8949497 intron,intron CG43783 -,orb2 - chr3L 8949608 intron,intron CG43783 -,orb2 - chr3L_13_8945001 chr3L_8945001 RAL-395 1690 chr3L 9030401 9030445 chr3L 9030506 9030550 15 105 8.5 7.0 7.8 1.7 149 chr3L 9030401 intergenic not near genes chr3L 9030476 intergenic not near genes chr3L 9030550 intergenic not near genes chr3L_15_9030001 chr3L_9030001 RAL-395 1691 chr3L 9076900 9076952 chr3L 9084486 9084538 412 32 7586 12.5 10.5 11.5 2.6 7638 chr3L 9076900 exon Tequila + chr3L 9080719 intron Tequila + chr3L 9084538 exon Tequila + chr3L_32_9080001 chr3L_9080001 RAL-395 1692 chr3L 9130532 9130581 chr3L 9134319 9134368 412 34 3786 8.0 10.0 9.0 3.4 3836 chr3L 9130532 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134368 intergenic Dhpr + chr3L_34_9130001 chr3L_9130001 RAL-395 1693 chr3L 9164675 9164709 chr3L 9166168 9166201 hobo 19 1492 17.5 0.5 9.0 1.9 1526 chr3L 9164675 intron Rdl - chr3L 9165438 intron Rdl - chr3L 9166201 intron Rdl - chr3L_19_9165001 chr3L_9165001 RAL-395 1694 chr3L 9219220 9219269 chr3L 9219918 9219963 jockey 30 697 9.5 15.0 12.2 2.3 743 chr3L 9219220 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219963 intergenic not near genes chr3L_30_9215001 chr3L_9215001 RAL-395 1695 chr3L 9232849 9232868 chr3L 9232951 9232970 7 102 6.5 9.5 8.0 0.8 121 chr3L 9232849 intergenic not near genes chr3L 9232910 intergenic not near genes chr3L 9232970 intergenic not near genes chr3L_7_9230001 chr3L_9230001 RAL-395 1696 chr3L 9234504 9234561 chr3L 9234741 9234797 36 236 5.5 6.5 6.0 5.1 293 chr3L 9234504 intergenic not near genes chr3L 9234650 intergenic CG4483 - chr3L 9234797 intergenic CG4483 - chr3L_36_9230001 chr3L_9230001 RAL-395 1697 chr3L 9270605 9270651 chr3L 9278382 9278428 roo 21 7773 6.0 8.0 7.0 2.6 7823 chr3L 9270605 intron GluRIB + chr3L 9274516 intron GluRIB + chr3L 9278428 exon GluRIB + chr3L_21_9270001 chr3L_9270001 RAL-395 1698 chr3L 9307795 9307796 chr3L 22908066 22908067 15 13600271 31.5 37.5 34.5 0.4 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_15_16105001 chr3L_16105001 RAL-395 1699 chr3L 9314005 9314055 chr3L 9314121 9314159 8 110 0.0 4.5 2.2 2.5 154 chr3L 9314005 intergenic not near genes chr3L 9314082 intergenic not near genes chr3L 9314159 intergenic not near genes chr3L_8_9310001 chr3L_9310001 RAL-395 1700 chr3L 9348620 9348646 chr3L 9348787 9348819 11 172 5.5 11.0 8.2 1.2 199 chr3L 9348620 intergenic PGRP-LC + chr3L 9348720 intergenic PGRP-LC + chr3L 9348819 intergenic PGRP-LC + chr3L_11_9345001 chr3L_9345001 RAL-395 1701 chr3L 9359566 9359619 chr3L 9359682 9359736 32 117 6.0 8.5 7.2 3.9 170 chr3L 9359566 3` UTR CG32039 + chr3L 9359651 3` UTR CG32039 + chr3L 9359736 3` UTR CG32039 + chr3L_32_9355001 chr3L_9355001 RAL-395 1702 chr3L 9392443 9392450 chr3L 9395290 9395297 Doc 6 2847 26.0 7.5 16.8 0.3 2854 chr3L 9392443 intron CG4080 - chr3L 9393870 intron CG4080 - chr3L 9395297 intron CG4080 - chr3L_6_9390001 chr3L_9390001 RAL-395 1703 chr3L 9396825 9396861 chr3L 9396930 9396955 6 103 8.0 0.5 4.2 1.2 130 chr3L 9396825 intron CG4080 - chr3L 9396890 intron CG4080 - chr3L 9396955 intron CG4080 - chr3L_6_9395001 chr3L_9395001 RAL-395 1704 chr3L 9425992 9426052 chr3L 9427956 9428016 46 1966 63.0 70.0 66.5 0.7 2024 chr3L 9425992 intron CG3967 - chr3L 9427004 intergenic Shc +,CG3967 - chr3L 9428016 exon Shc + chr3L_46_9425001 chr3L_9425001 RAL-395 1705 chr3L 9429484 9429542 chr3L 9429604 9429659 7 119 0.5 10.5 5.5 1.1 175 chr3L 9429484 intron,3` UTR RpS17 -,snoRNA:Psi28S-612 - chr3L 9429572 intron RpS17 - chr3L 9429659 intron RpS17 - chr3L_7_9425001 chr3L_9425001 RAL-395 1706 chr3L 9443491 9443541 chr3L 9445304 9445354 S-element 23 1813 2.0 6.5 4.2 4.4 1863 chr3L 9443491 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445354 intron CG33926 + chr3L_23_9440001 chr3L_9440001 RAL-395 1707 chr3L 9501701 9501734 chr3L 9502213 9502246 roo 14 512 2.5 9.5 6.0 2.0 545 chr3L 9501701 intron path - chr3L 9501974 intron path - chr3L 9502246 intron path - chr3L_14_9500001 chr3L_9500001 RAL-395 1708 chr3L 9503437 9503460 chr3L 9503552 9503575 13 115 9.0 12.5 10.8 1.1 138 chr3L 9503437 intron path - chr3L 9503506 intron path - chr3L 9503575 intron path - chr3L_13_9500001 chr3L_9500001 RAL-395 1709 chr3L 9513737 9513789 chr3L 9513895 9513949 25 158 7.0 5.5 6.2 3.5 212 chr3L 9513737 intergenic CG33702 -,CG33700 - chr3L 9513843 intergenic CG33700 -,CG33702 - chr3L 9513949 intergenic CG33700 - chr3L_25_9510001 chr3L_9510001 RAL-395 1710 chr3L 9533735 9533780 chr3L 9541321 9541366 412 16 7585 10.5 14.0 12.2 1.2 7631 chr3L 9533735 intergenic not near genes chr3L 9537550 intergenic not near genes chr3L 9541366 intergenic not near genes chr3L_16_9535001 chr3L_9535001 RAL-395 1711 chr3L 9571883 9571924 chr3L 9572257 9572298 jockey 23 374 15.0 4.0 9.5 2.2 415 chr3L 9571883 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572298 intron CG42673 + chr3L_23_9570001 chr3L_9570001 RAL-395 1712 chr3L 9572271 9572326 chr3L 9572376 9572431 13 105 3.0 3.5 3.2 3.1 160 chr3L 9572271 intron CG42673 + chr3L 9572351 intron CG42673 + chr3L 9572431 intron CG42673 + chr3L_13_9570001 chr3L_9570001 RAL-395 1713 chr3L 9575888 9575941 chr3L 9580990 9581046 jockey 23 5102 5.5 4.5 5.0 3.8 5158 chr3L 9575888 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581046 intron CG42673 + chr3L_23_9575001 chr3L_9575001 RAL-395 1714 chr3L 9637826 9637877 chr3L 9637934 9637985 33 108 7.0 9.0 8.0 3.7 159 chr3L 9637826 exon fry - chr3L 9637906 intron fry - chr3L 9637985 intron fry - chr3L_33_9635001 chr3L_9635001 RAL-395 1715 chr3L 9639006 9639059 chr3L 9639115 9639169 19 110 0.0 4.5 2.2 5.9 163 chr3L 9639006 intron,3` UTR fry -,CG8329 + chr3L 9639088 intron fry - chr3L 9639169 intron fry - chr3L_19_9635001 chr3L_9635001 RAL-395 1716 chr3L 9715573 9715622 chr3L 9715675 9715725 8 102 2.0 5.0 3.5 1.8 152 chr3L 9715573 intron vsg + chr3L 9715649 intron vsg + chr3L 9715725 intron vsg + chr3L_8_9715001 chr3L_9715001 RAL-395 1717 chr3L 9907125 9907180 chr3L 9907252 9907307 26 127 2.0 8.0 5.0 4.3 182 chr3L 9907125 intergenic not near genes chr3L 9907216 intergenic not near genes chr3L 9907307 intergenic not near genes chr3L_26_9905001 chr3L_9905001 RAL-395 1718 chr3L 9929667 9929698 chr3L 9938474 9938505 roo 14 8806 4.5 10.5 7.5 1.6 8838 chr3L 9929667 intron CG34356 + chr3L 9934086 intron CG34356 + chr3L 9938505 intron CG34356 + chr3L_14_9930001 chr3L_9930001 RAL-395 1719 chr3L 10003125 10003180 chr3L 10003247 10003302 21 123 8.0 9.0 8.5 2.2 177 chr3L 10003125 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003302 intron dpr6 + chr3L_21_10000001 chr3L_10000001 RAL-395 1720 chr3L 10007168 10007206 chr3L 10007297 10007335 19 128 3.5 11.0 7.2 2.3 167 chr3L 10007168 intron dpr6 + chr3L 10007252 intron dpr6 + chr3L 10007335 intron dpr6 + chr3L_19_10005001 chr3L_10005001 RAL-395 1721 chr3L 10032693 10032730 chr3L 10032808 10032845 24 114 5.0 5.5 5.2 3.9 152 chr3L 10032693 intron dpr6 + chr3L 10032769 intron dpr6 + chr3L 10032845 intron dpr6 + chr3L_24_10030001 chr3L_10030001 RAL-395 1722 chr3L 10098165 10098189 chr3L 10098500 10098521 10 335 11.5 0.0 5.8 1.5 356 chr3L 10098165 intron dpr6 + chr3L 10098343 intron dpr6 + chr3L 10098521 intron dpr6 + chr3L_10_10095001 chr3L_10095001 RAL-395 1723 chr3L 10191262 10191312 chr3L 10191399 10191449 32 137 13.0 12.5 12.8 2.3 187 chr3L 10191262 exon ect - chr3L 10191356 intron ect - chr3L 10191449 intron ect - chr3L_32_10190001 chr3L_10190001 RAL-395 1724 chr3L 10214704 10214824 chr3L 10214817 10214952 20 134 0.5 0.5 0.5 13.3 248 chr3L 10214704 intergenic not near genes chr3L 10214828 intergenic not near genes chr3L 10214952 intergenic not near genes chr3L_20_10210001 chr3L_10210001 RAL-395 1725 chr3L 10247672 10247677 chr3L 10247777 10247778 4 104 12.5 0.0 6.2 0.6 106 chr3L 10247672 5` UTR CR44539 + chr3L 10247725 5` UTR CR44539 + chr3L 10247778 intergenic CR44539 +,CR44540 - chr3L_4_10245001 chr3L_10245001 RAL-395 1726 chr3L 10297093 10297149 chr3L 10297226 10297282 29 133 7.5 5.5 6.5 3.9 189 chr3L 10297093 intergenic not near genes chr3L 10297188 intergenic not near genes chr3L 10297282 intergenic not near genes chr3L_29_10295001 chr3L_10295001 RAL-395 1727 chr3L 10308717 10308765 chr3L 10308820 10308867 24 102 5.0 11.0 8.0 2.7 150 chr3L 10308717 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308867 intergenic not near genes chr3L_24_10305001 chr3L_10305001 RAL-395 1728 chr3L 10348628 10348668 chr3L 10348771 10348811 21 143 9.5 0.0 4.8 3.6 183 chr3L 10348628 intron CR44327 + chr3L 10348720 intron CR44327 + chr3L 10348811 intron CR44327 + chr3L_21_10345001 chr3L_10345001 RAL-395 1729 chr3L 10381293 10381354 chr3L 10381398 10381458 18 105 9.0 0.0 4.5 3.3 165 chr3L 10381293 intergenic not near genes chr3L 10381376 intergenic not near genes chr3L 10381458 intergenic not near genes chr3L_18_10380001 chr3L_10380001 RAL-395 1730 chr3L 10381700 10381742 chr3L 10381810 10381854 13 107 4.5 8.5 6.5 1.7 154 chr3L 10381700 intergenic not near genes chr3L 10381777 intergenic not near genes chr3L 10381854 intergenic not near genes chr3L_13_10380001 chr3L_10380001 RAL-395 1731 chr3L 10393174 10393193 chr3L 10393280 10393299 10 106 0.0 15.0 7.5 1.2 125 chr3L 10393174 intergenic not near genes chr3L 10393236 intergenic not near genes chr3L 10393299 intergenic not near genes chr3L_10_10390001 chr3L_10390001 RAL-395 1732 chr3L 10414921 10414969 chr3L 10417319 10417366 Doc 22 2398 8.5 12.0 10.2 2.0 2445 chr3L 10414921 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417366 intergenic not near genes chr3L_22_10415001 chr3L_10415001 RAL-395 1733 chr3L 10420458 10420506 chr3L 10420616 10420663 4 158 3.5 0.0 1.8 1.4 205 chr3L 10420458 intergenic not near genes chr3L 10420560 intergenic not near genes chr3L 10420663 intergenic not near genes chr3L_4_10420001 chr3L_10420001 RAL-395 1734 chr3L 10538667 10538723 chr3L 10538772 10538828 12 105 4.5 2.5 3.5 2.7 161 chr3L 10538667 intron A2bp1 + chr3L 10538748 intron A2bp1 + chr3L 10538828 intron A2bp1 + chr3L_12_10535001 chr3L_10535001 RAL-395 1735 chr3L 10551455 10551489 chr3L 10551567 10551573 13 110 0.0 7.0 3.5 2.9 118 chr3L 10551455 intron A2bp1 + chr3L 10551514 intron A2bp1 + chr3L 10551573 intron A2bp1 + chr3L_13_10550001 chr3L_10550001 RAL-395 1736 chr3L 10584254 10584302 chr3L 10584367 10584415 27 113 8.5 4.5 6.5 3.6 161 chr3L 10584254 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584415 intron A2bp1 + chr3L_27_10580001 chr3L_10580001 RAL-395 1737 chr3L 10600438 10600473 chr3L 10600544 10600581 9 108 5.5 3.5 4.5 1.6 143 chr3L 10600438 intergenic not near genes chr3L 10600510 intergenic not near genes chr3L 10600581 intergenic not near genes chr3L_9_10600001 chr3L_10600001 RAL-395 1738 chr3L 10601180 10601229 chr3L 10601299 10601348 26 118 2.5 9.0 5.8 3.8 168 chr3L 10601180 intergenic not near genes chr3L 10601264 intergenic not near genes chr3L 10601348 intergenic not near genes chr3L_26_10600001 chr3L_10600001 RAL-395 1739 chr3L 10621829 10621878 chr3L 10621942 10621991 25 112 3.0 8.0 5.5 3.8 162 chr3L 10621829 intergenic not near genes chr3L 10621910 intergenic not near genes chr3L 10621991 intergenic not near genes chr3L_25_10620001 chr3L_10620001 RAL-395 1740 chr3L 10658056 10658203 chr3L 10658159 10658356 47 133 0.0 0.0 0.0 47.0 300 chr3L 10658056 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658356 intron CG32066 - chr3L_47_10655001 chr3L_10655001 RAL-395 1741 chr3L 10694893 10694927 chr3L 10695011 10695045 11 118 1.5 7.5 4.5 2.0 152 chr3L 10694893 intron NijA - chr3L 10694969 intron NijA - chr3L 10695045 exon NijA - chr3L_11_10690001 chr3L_10690001 RAL-395 1742 chr3L 10721971 10721999 chr3L 10722079 10722107 8 108 7.5 0.0 3.8 1.7 136 chr3L 10721971 intergenic not near genes chr3L 10722039 intergenic not near genes chr3L 10722107 intergenic not near genes chr3L_8_10720001 chr3L_10720001 RAL-395 1743 chr3L 10745516 10745565 chr3L 10745622 10745671 21 105 5.0 1.5 3.2 5.0 155 chr3L 10745516 intergenic not near genes chr3L 10745594 intergenic not near genes chr3L 10745671 intergenic not near genes chr3L_21_10745001 chr3L_10745001 RAL-395 1744 chr3L 10748714 10748764 chr3L 10748831 10748882 25 118 6.0 7.0 6.5 3.3 168 chr3L 10748714 intergenic not near genes chr3L 10748798 intergenic not near genes chr3L 10748882 intergenic not near genes chr3L_25_10745001 chr3L_10745001 RAL-395 1745 chr3L 10755435 10755484 chr3L 10755786 10755824 27 349 8.0 8.5 8.2 2.9 389 chr3L 10755435 intergenic not near genes chr3L 10755630 intergenic not near genes chr3L 10755824 intergenic not near genes chr3L_27_10755001 chr3L_10755001 RAL-395 1746 chr3L 10820476 10820520 chr3L 10820651 10820695 7 175 4.0 0.0 2.0 2.3 219 chr3L 10820476 intergenic not near genes chr3L 10820586 intergenic not near genes chr3L 10820695 intergenic not near genes chr3L_7_10820001 chr3L_10820001 RAL-395 1747 chr3L 10956429 10956465 chr3L 10956573 10956609 15 144 4.5 13.5 9.0 1.5 180 chr3L 10956429 intergenic not near genes chr3L 10956519 intergenic not near genes chr3L 10956609 intergenic not near genes chr3L_15_10955001 chr3L_10955001 RAL-395 1748 chr3L 10956978 10957034 chr3L 10957080 10957136 37 102 10.5 9.0 9.8 3.4 158 chr3L 10956978 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957136 intergenic not near genes chr3L_37_10955001 chr3L_10955001 RAL-395 1749 chr3L 10958186 10958236 chr3L 10958294 10958344 15 108 3.5 0.5 2.0 5.0 158 chr3L 10958186 intergenic not near genes chr3L 10958265 intergenic not near genes chr3L 10958344 intergenic not near genes chr3L_15_10955001 chr3L_10955001 RAL-395 1750 chr3L 10980568 10980617 chr3L 10980674 10980717 27 105 14.0 9.5 11.8 2.1 149 chr3L 10980568 intergenic not near genes chr3L 10980642 intergenic not near genes chr3L 10980717 intergenic klu - chr3L_27_10980001 chr3L_10980001 RAL-395 1751 chr3L 11054178 11054204 chr3L 11054282 11054308 10 103 6.0 7.0 6.5 1.3 130 chr3L 11054178 5` UTR CG7888 + chr3L 11054243 5` UTR CG7888 + chr3L 11054308 5` UTR CG7888 + chr3L_10_11050001 chr3L_11050001 RAL-395 1752 chr3L 11087035 11087088 chr3L 11088849 11088903 S-element 19 1813 6.5 5.5 6.0 2.7 1868 chr3L 11087035 intron JIL-1 - chr3L 11087969 intron JIL-1 - chr3L 11088903 intron JIL-1 - chr3L_19_11085001 chr3L_11085001 RAL-395 1753 chr3L 11105277 11105322 chr3L 11107013 11107059 X-element 31 1736 9.0 12.5 10.8 2.6 1782 chr3L 11105277 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107059 exon CG32073 - chr3L_31_11105001 chr3L_11105001 RAL-395 1754 chr3L 11131781 11131815 chr3L 11132071 11132072 11 287 5.0 0.5 2.8 2.9 291 chr3L 11131781 intron CG42575 + chr3L 11131926 intron,3` UTR CG42575 +,CG32074 - chr3L 11132072 intron,exon CG42575 +,CG32074 - chr3L_11_11130001 chr3L_11130001 RAL-395 1755 chr3L 11135504 11135803 chr3L 11135760 11135914 34 166 0.0 0.0 0.0 34.0 410 chr3L 11135504 intergenic CG14143 + chr3L 11135709 intergenic CG14143 +,CG32082 + chr3L 11135914 intergenic CG32082 +,CG14143 + chr3L_34_11135001 chr3L_11135001 RAL-395 1756 chr3L 11141411 11141467 chr3L 11141518 11141588 20 120 11.0 0.0 5.5 3.1 177 chr3L 11141411 intron CG32082 + chr3L 11141500 intron CG32082 + chr3L 11141588 intron CG32082 + chr3L_20_11140001 chr3L_11140001 RAL-395 1757 chr3L 11145534 11145556 chr3L 11145650 11145671 8 116 0.0 8.0 4.0 1.6 137 chr3L 11145534 intron CG32082 + chr3L 11145602 intron CG32082 + chr3L 11145671 intron CG32082 + chr3L_8_11145001 chr3L_11145001 RAL-395 1758 chr3L 11158137 11158397 chr3L 11158343 11158544 51 183 41.0 45.0 43.0 1.2 407 chr3L 11158137 intron CG32082 + chr3L 11158340 intron CG32082 + chr3L 11158544 exon CG32082 + chr3L_51_11155001 chr3L_11155001 RAL-395 1759 chr3L 11158505 11158770 chr3L 11158646 11158942 43 151 45.0 54.5 49.8 0.8 437 chr3L 11158505 exon CG32082 + chr3L 11158724 exon CG32082 + chr3L 11158942 exon CG32082 + chr3L_43_11155001 chr3L_11155001 RAL-395 1760 chr3L 11158775 11158786 chr3L 11158947 11158958 11 172 36.0 23.5 29.8 0.4 183 chr3L 11158775 exon CG32082 + chr3L 11158866 intron CG32082 + chr3L 11158958 exon CG32082 + chr3L_11_11155001 chr3L_11155001 RAL-395 1761 chr3L 11158922 11158956 chr3L 11159312 11159346 22 389 29.5 56.5 43.0 0.5 424 chr3L 11158922 exon CG32082 + chr3L 11159134 intron CG32082 + chr3L 11159346 exon CG32082 + chr3L_22_11155001 chr3L_11155001 RAL-395 1762 chr3L 11224520 11224568 chr3L 11224668 11224715 10 148 6.5 3.0 4.8 1.7 195 chr3L 11224520 intron CG42671 + chr3L 11224618 intron CG42671 + chr3L 11224715 intron CG42671 + chr3L_10_11220001 chr3L_11220001 RAL-395 1763 chr3L 11229987 11229996 chr3L 11230110 11230119 6 123 13.5 13.0 13.2 0.4 132 chr3L 11229987 intergenic CG42671 + chr3L 11230053 intergenic CG42671 + chr3L 11230119 intergenic CG42671 + chr3L_6_11230001 chr3L_11230001 RAL-395 1764 chr3L 11230009 11230022 chr3L 11230109 11230135 6 118 8.0 13.0 10.5 0.5 126 chr3L 11230009 intergenic CG42671 + chr3L 11230072 intergenic CG42671 + chr3L 11230135 intergenic CG42671 + chr3L_6_11230001 chr3L_11230001 RAL-395 1765 chr3L 11249838 11249892 chr3L 11249947 11250001 23 108 3.0 7.0 5.0 3.8 163 chr3L 11249838 5` UTR CR44717 + chr3L 11249920 5` UTR CR44717 + chr3L 11250001 5` UTR CR44717 + chr3L_23_11245001 chr3L_11245001 RAL-395 1766 chr3L 11264447 11264487 chr3L 11271425 11271465 17.6 9 6978 6.5 5.0 5.8 1.3 7018 chr3L 11264447 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271465 intergenic not near genes chr3L_9_11265001 chr3L_11265001 RAL-395 1767 chr3L 11276659 11276694 chr3L 11276765 11276799 9 106 0.0 11.5 5.8 1.3 140 chr3L 11276659 intergenic not near genes chr3L 11276729 intergenic not near genes chr3L 11276799 intergenic not near genes chr3L_9_11275001 chr3L_11275001 RAL-395 1768 chr3L 11315904 11316007 chr3L 11315989 11316118 14 107 0.0 0.0 0.0 14.0 214 chr3L 11315904 5` UTR CR44361 + chr3L 11316011 5` UTR CR44361 + chr3L 11316118 5` UTR CR44361 + chr3L_14_11315001 chr3L_11315001 RAL-395 1769 chr3L 11329671 11329680 chr3L 11332902 11332910 jockey 8 3231 20.5 7.0 13.8 0.5 3239 chr3L 11329671 intergenic not near genes chr3L 11331290 intergenic not near genes chr3L 11332910 intergenic not near genes chr3L_8_11330001 chr3L_11330001 RAL-395 1770 chr3L 11329681 11329700 chr3L 11332896 11332931 jockey 13 3230 16.5 4.5 10.5 1.1 3250 chr3L 11329681 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332931 intergenic not near genes chr3L_13_11330001 chr3L_11330001 RAL-395 1771 chr3L 11329701 11329719 chr3L 11332894 11332950 jockey 21 3226 12.0 4.5 8.2 2.3 3249 chr3L 11329701 intergenic not near genes chr3L 11331326 intergenic not near genes chr3L 11332950 intergenic not near genes chr3L_21_11330001 chr3L_11330001 RAL-395 1772 chr3L 11435536 11435590 chr3L 11435731 11435785 31 195 9.5 9.5 9.5 3.0 249 chr3L 11435536 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435785 5` UTR CR44548 + chr3L_31_11435001 chr3L_11435001 RAL-395 1773 chr3L 11441360 11441381 chr3L 11441465 11441486 5 105 0.0 7.0 3.5 1.1 126 chr3L 11441360 intergenic not near genes chr3L 11441423 intergenic not near genes chr3L 11441486 intergenic not near genes chr3L_5_11440001 chr3L_11440001 RAL-395 1774 chr3L 11456884 11456905 chr3L 11457009 11457030 6 125 5.0 11.0 8.0 0.7 146 chr3L 11456884 intergenic CG12289 - chr3L 11456957 intergenic CG12289 - chr3L 11457030 intergenic CG12289 - chr3L_6_11455001 chr3L_11455001 RAL-395 1775 chr3L 11475606 11475643 chr3L 11475723 11475759 16 116 0.0 5.0 2.5 4.6 153 chr3L 11475606 intergenic Vha16-2 + chr3L 11475682 intergenic Vha16-2 + chr3L 11475759 intergenic Vha16-2 + chr3L_16_11475001 chr3L_11475001 RAL-395 1776 chr3L 11579531 11579585 chr3L 11579663 11579717 33 132 5.5 5.5 5.5 5.1 186 chr3L 11579531 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579717 intergenic CG43390 - chr3L_33_11575001 chr3L_11575001 RAL-395 1777 chr3L 11587894 11587944 chr3L 11587996 11588036 17 101 8.5 3.5 6.0 2.4 142 chr3L 11587894 intergenic rt - chr3L 11587965 intergenic rt - chr3L 11588036 intergenic rt - chr3L_17_11585001 chr3L_11585001 RAL-395 1778 chr3L 11588706 11588759 chr3L 11588888 11588941 22 182 6.0 8.0 7.0 2.8 235 chr3L 11588706 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588941 intergenic not near genes chr3L_22_11585001 chr3L_11585001 RAL-395 1779 chr3L 11590245 11590273 chr3L 11590361 11590389 9 116 0.5 5.0 2.8 2.4 144 chr3L 11590245 intergenic CG7377 + chr3L 11590317 intergenic CG7377 + chr3L 11590389 intergenic CG7377 +,CG33268 - chr3L_9_11590001 chr3L_11590001 RAL-395 1780 chr3L 11663736 11663753 chr3L 11663876 11663904 5 147 9.0 0.0 4.5 0.9 168 chr3L 11663736 intron CG32085 - chr3L 11663820 intron CG32085 - chr3L 11663904 intron CG32085 - chr3L_5_11660001 chr3L_11660001 RAL-395 1781 chr3L 11678087 11678125 chr3L 11678200 11678237 12 113 8.0 10.0 9.0 1.2 150 chr3L 11678087 intron CG32085 - chr3L 11678162 intron CG32085 - chr3L 11678237 intron CG32085 - chr3L_12_11675001 chr3L_11675001 RAL-395 1782 chr3L 11708664 11708782 chr3L 11708781 11708889 4 110 0.0 0.0 0.0 4.0 225 chr3L 11708664 intergenic CG11658 -,Ccdc56 +,mtTFB1 + chr3L 11708776 intergenic Ccdc56 +,mtTFB1 +,CG11658 - chr3L 11708889 intergenic Ccdc56 +,mtTFB1 +,CG11658 - chr3L_4_11705001 chr3L_11705001 RAL-395 1783 chr3L 11723061 11723109 chr3L 11727882 11727930 Doc 24 4821 7.5 8.0 7.8 2.7 4869 chr3L 11723061 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727930 3` UTR Bmcp + chr3L_24_11725001 chr3L_11725001 RAL-395 1784 chr3L 11740114 11740144 chr3L 11740238 11740256 15 122 16.5 15.0 15.8 0.9 142 chr3L 11740114 intron CG6024 - chr3L 11740185 intron CG6024 - chr3L 11740256 intron CG6024 - chr3L_15_11740001 chr3L_11740001 RAL-395 1785 chr3L 11757896 11757932 chr3L 11758017 11758055 4 122 6.5 0.0 3.2 1.0 159 chr3L 11757896 intron CG6024 - chr3L 11757976 intron CG6024 - chr3L 11758055 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-395 1786 chr3L 802565 802566 chr3L 11777678 11777678 5 10975112 44.0 47.5 45.8 0.1 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_6290001 chr3L_6290001 RAL-395 1787 chr3L 9313026 9313027 chr3L 11777678 11777678 9 2464652 38.5 47.5 43.0 0.2 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_10545001 chr3L_10545001 RAL-395 1788 chr3L 11777678 11777678 chr3L 12163305 12163305 5 385627 43.5 34.5 39.0 0.1 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_5_11970001 chr3L_11970001 RAL-395 1789 chr3L 11810535 11810545 chr3L 11810638 11810649 8 104 3.0 7.0 5.0 1.3 114 chr3L 11810535 intron CG42255 - chr3L 11810592 intron CG42255 - chr3L 11810649 exon CG42255 - chr3L_8_11810001 chr3L_11810001 RAL-395 1790 chr3L 11846396 11846403 chr3L 11846529 11846537 4 134 11.0 13.0 12.0 0.3 141 chr3L 11846396 intergenic not near genes chr3L 11846466 intergenic not near genes chr3L 11846537 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-395 1791 chr3L 11846404 11846418 chr3L 11846511 11846552 9 130 8.0 7.0 7.5 1.1 148 chr3L 11846404 intergenic not near genes chr3L 11846478 intergenic not near genes chr3L 11846552 intergenic not near genes chr3L_9_11845001 chr3L_11845001 RAL-395 1792 chr3L 11847142 11847172 chr3L 11847258 11847288 15 116 7.0 0.0 3.5 3.3 146 chr3L 11847142 intergenic CG12521 - chr3L 11847215 intergenic CG12521 - chr3L 11847288 intergenic CG12521 - chr3L_15_11845001 chr3L_11845001 RAL-395 1793 chr3L 11849305 11849356 chr3L 11849431 11849482 22 126 4.5 6.0 5.2 3.5 177 chr3L 11849305 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849482 intergenic not near genes chr3L_22_11845001 chr3L_11845001 RAL-395 1794 chr3L 11864545 11864579 chr3L 11866231 11866265 pogo 26 1686 8.0 4.0 6.0 3.7 1720 chr3L 11864545 intron CG44837 - chr3L 11865405 intron CG44837 - chr3L 11866265 intron CG44837 - chr3L_26_11865001 chr3L_11865001 RAL-395 1795 chr3L 11887232 11887287 chr3L 11887355 11887415 16 123 3.5 0.0 1.8 5.7 183 chr3L 11887232 intron CG44837 - chr3L 11887324 intron,3` UTR CG44837 -,CG5897 - chr3L 11887415 intron,3` UTR CG44837 -,CG5897 - chr3L_16_11885001 chr3L_11885001 RAL-395 1796 chr3L 11902085 11902117 chr3L 11902381 11902413 12 296 52.5 43.0 47.8 0.2 328 chr3L 11902085 intron CG44837 - chr3L 11902249 intron CG44837 - chr3L 11902413 intron CG44837 - chr3L_12_11900001 chr3L_11900001 RAL-395 1797 chr3L 11943469 11943521 chr3L 11943595 11943648 19 127 2.5 6.0 4.2 3.7 179 chr3L 11943469 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943648 3` UTR CG5883 - chr3L_19_11940001 chr3L_11940001 RAL-395 1798 chr3L 12013885 12013938 chr3L 12014002 12014054 33 117 4.5 5.0 4.8 5.7 169 chr3L 12013885 intron rols - chr3L 12013970 intron rols - chr3L 12014054 intron rols - chr3L_33_12010001 chr3L_12010001 RAL-395 1799 chr3L 12052682 12052738 chr3L 12052797 12052852 26 114 4.0 6.5 5.2 4.2 170 chr3L 12052682 intron rols - chr3L 12052767 intron rols - chr3L 12052852 intron rols - chr3L_26_12050001 chr3L_12050001 RAL-395 1800 chr3L 12197366 12197420 chr3L 12197474 12197528 24 108 6.0 6.5 6.2 3.3 162 chr3L 12197366 intergenic CG11529 + chr3L 12197447 intergenic CG11529 + chr3L 12197528 intergenic CG11529 + chr3L_24_12195001 chr3L_12195001 RAL-395 1801 chr3L 12290227 12290232 chr3L 12290343 12290348 4 116 10.5 0.0 5.2 0.6 121 chr3L 12290227 intergenic CR45658 - chr3L 12290288 intergenic CR45658 - chr3L 12290348 intergenic CR45658 - chr3L_4_12290001 chr3L_12290001 RAL-395 1802 chr3L 12304067 12304118 chr3L 12304169 12304220 23 100 11.0 7.5 9.2 2.3 153 chr3L 12304067 intergenic not near genes chr3L 12304144 intergenic not near genes chr3L 12304220 intergenic not near genes chr3L_23_12300001 chr3L_12300001 RAL-395 1803 chr3L 12362578 12362628 chr3L 12362732 12362784 19 154 4.5 9.5 7.0 2.4 206 chr3L 12362578 intergenic not near genes chr3L 12362681 intergenic not near genes chr3L 12362784 intergenic not near genes chr3L_19_12360001 chr3L_12360001 RAL-395 1804 chr3L 12369508 12369568 chr3L 12369624 12369676 27 115 6.0 2.0 4.0 5.4 168 chr3L 12369508 intron Ncc69 - chr3L 12369592 intron Ncc69 - chr3L 12369676 intron Ncc69 - chr3L_27_12365001 chr3L_12365001 RAL-395 1805 chr3L 12446245 12446300 chr3L 12446349 12446359 33 91 2.0 8.5 5.2 5.3 114 chr3L 12446245 intergenic not near genes chr3L 12446302 intergenic not near genes chr3L 12446359 intergenic not near genes chr3L_33_12445001 chr3L_12445001 RAL-395 1806 chr3L 12491677 12491735 chr3L 12491786 12491844 9 109 0.0 5.5 2.8 2.4 167 chr3L 12491677 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491760 intergenic CG10657 -,CR45682 + chr3L 12491844 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_9_12490001 chr3L_12490001 RAL-395 1807 chr3L 12578020 12578067 chr3L 12578134 12578181 4 114 8.0 0.0 4.0 0.8 161 chr3L 12578020 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578181 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-395 1808 chr3L 12591607 12591641 chr3L 12591710 12591744 29 102 19.5 13.0 16.2 1.7 137 chr3L 12591607 intron ara + chr3L 12591676 intron ara + chr3L 12591744 intron ara + chr3L_29_12590001 chr3L_12590001 RAL-395 1809 chr3L 12610972 12611026 chr3L 12611244 12611298 21 272 0.5 3.0 1.8 7.5 326 chr3L 12610972 intron caup + chr3L 12611135 intron caup + chr3L 12611298 intron caup + chr3L_21_12610001 chr3L_12610001 RAL-395 1810 chr3L 12614578 12614597 chr3L 12614742 12614761 9 164 0.0 7.5 3.8 1.9 183 chr3L 12614578 intron caup + chr3L 12614670 intron caup + chr3L 12614761 intron caup + chr3L_9_12610001 chr3L_12610001 RAL-395 1811 chr3L 12620970 12620984 chr3L 12621072 12621086 9 102 18.5 23.5 21.0 0.4 116 chr3L 12620970 3` UTR caup + chr3L 12621028 3` UTR caup + chr3L 12621086 3` UTR caup + chr3L_9_12620001 chr3L_12620001 RAL-395 1812 chr3L 12626126 12626164 chr3L 12626261 12626299 12 135 5.5 1.5 3.5 2.7 173 chr3L 12626126 intergenic not near genes chr3L 12626212 intergenic not near genes chr3L 12626299 intergenic not near genes chr3L_12_12625001 chr3L_12625001 RAL-395 1813 chr3L 12647923 12647962 chr3L 12648025 12648064 15 102 10.0 1.5 5.8 2.2 141 chr3L 12647923 5` UTR CR32111 + chr3L 12647994 5` UTR CR32111 + chr3L 12648064 5` UTR CR32111 + chr3L_15_12645001 chr3L_12645001 RAL-395 1814 chr3L 12659738 12659758 chr3L 12659840 12659860 14 102 15.5 9.5 12.5 1.0 122 chr3L 12659738 5` UTR CR44553 + chr3L 12659799 5` UTR CR44553 + chr3L 12659860 5` UTR CR44553 + chr3L_14_12655001 chr3L_12655001 RAL-395 1815 chr3L 12659761 12659794 chr3L 12659837 12659896 18 100 10.0 9.5 9.8 1.7 135 chr3L 12659761 5` UTR CR44553 + chr3L 12659828 5` UTR CR44553 + chr3L 12659896 5` UTR CR44553 + chr3L_18_12655001 chr3L_12655001 RAL-395 1816 chr3L 12668040 12668077 chr3L 12668151 12668184 13 111 12.0 8.5 10.2 1.2 144 chr3L 12668040 intergenic not near genes chr3L 12668112 intergenic not near genes chr3L 12668184 intergenic not near genes chr3L_13_12665001 chr3L_12665001 RAL-395 1817 chr3L 12706616 12706656 chr3L 12706769 12706809 17 153 9.0 7.0 8.0 1.9 193 chr3L 12706616 intron mirr + chr3L 12706712 intron mirr + chr3L 12706809 intron mirr + chr3L_17_12705001 chr3L_12705001 RAL-395 1818 chr3L 12799817 12799833 chr3L 12799944 12799967 6 133 22.0 22.0 22.0 0.3 150 chr3L 12799817 intron Atg1 - chr3L 12799892 intron Atg1 - chr3L 12799967 intron Atg1 - chr3L_6_12795001 chr3L_12795001 RAL-395 1819 chr3L 12821121 12821171 chr3L 12821236 12821286 25 114 6.5 8.0 7.2 3.0 165 chr3L 12821121 exon CG42588 + chr3L 12821204 exon CG42588 + chr3L 12821286 exon CG42588 + chr3L_25_12820001 chr3L_12820001 RAL-395 1820 chr3L 12857972 12857999 chr3L 12858092 12858119 15 120 1.5 3.5 2.5 4.3 147 chr3L 12857972 3` UTR CG32107 - chr3L 12858046 3` UTR CG32107 - chr3L 12858119 3` UTR CG32107 - chr3L_15_12855001 chr3L_12855001 RAL-395 1821 chr3L 12872219 12872270 chr3L 12872329 12872373 25 108 8.0 10.5 9.2 2.5 154 chr3L 12872219 intergenic not near genes chr3L 12872296 intergenic not near genes chr3L 12872373 intergenic not near genes chr3L_25_12870001 chr3L_12870001 RAL-395 1822 chr3L 12874899 12874952 chr3L 12877217 12877270 jockey 37 2317 7.5 7.0 7.2 4.5 2371 chr3L 12874899 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877270 intergenic not near genes chr3L_37_12875001 chr3L_12875001 RAL-395 1823 chr3L 12892900 12892908 chr3L 12893032 12893040 7 132 6.0 9.5 7.8 0.8 140 chr3L 12892900 intron CG14118 + chr3L 12892970 intron CG14118 + chr3L 12893040 intron CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-395 1824 chr3L 12894783 12894810 chr3L 12894887 12894914 18 103 10.5 16.5 13.5 1.2 131 chr3L 12894783 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894914 intergenic CG14118 + chr3L_18_12890001 chr3L_12890001 RAL-395 1825 chr3L 12919255 12919272 chr3L 12924753 12924770 Rt1c 10 5498 18.5 4.0 11.2 0.8 5515 chr3L 12919255 intergenic not near genes chr3L 12922012 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-395 1826 chr3L 12928195 12928231 chr3L 12928346 12928384 11 153 7.5 7.5 7.5 1.3 189 chr3L 12928195 intergenic not near genes chr3L 12928290 intergenic not near genes chr3L 12928384 intergenic not near genes chr3L_11_12925001 chr3L_12925001 RAL-395 1827 chr3L 12929936 12929959 chr3L 12930126 12930148 14 189 0.0 22.0 11.0 1.2 212 chr3L 12929936 intergenic not near genes chr3L 12930042 intergenic not near genes chr3L 12930148 intergenic not near genes chr3L_14_12930001 chr3L_12930001 RAL-395 1828 chr3L 12932661 12932716 chr3L 12932798 12932854 35 138 7.5 9.0 8.2 3.8 193 chr3L 12932661 intergenic not near genes chr3L 12932758 intergenic not near genes chr3L 12932854 intergenic not near genes chr3L_35_12930001 chr3L_12930001 RAL-395 1829 chr3L 12943840 12943863 chr3L 12943969 12943993 8 130 6.5 0.0 3.2 1.9 153 chr3L 12943840 intergenic not near genes chr3L 12943916 intergenic not near genes chr3L 12943993 intergenic not near genes chr3L_8_12940001 chr3L_12940001 RAL-395 1830 chr3L 12957764 12957807 chr3L 12962272 12962315 copia 23 4508 11.0 9.0 10.0 2.1 4551 chr3L 12957764 intergenic not near genes chr3L 12960040 intergenic not near genes chr3L 12962315 intergenic not near genes chr3L_23_12960001 chr3L_12960001 RAL-395 1831 chr3L 12977641 12977694 chr3L 12977927 12977980 32 285 4.5 6.0 5.2 5.2 339 chr3L 12977641 intergenic not near genes chr3L 12977810 intergenic not near genes chr3L 12977980 intergenic not near genes chr3L_32_12975001 chr3L_12975001 RAL-395 1832 chr3L 12978295 12978347 chr3L 12978418 12978470 16 123 5.5 6.5 6.0 2.3 175 chr3L 12978295 intergenic not near genes chr3L 12978382 intergenic not near genes chr3L 12978470 intergenic not near genes chr3L_16_12975001 chr3L_12975001 RAL-395 1833 chr3L 12980494 12980549 chr3L 12980607 12980668 28 114 12.5 0.0 6.2 3.9 174 chr3L 12980494 intergenic not near genes chr3L 12980581 intergenic not near genes chr3L 12980668 intergenic not near genes chr3L_28_12980001 chr3L_12980001 RAL-395 1834 chr3L 12992146 12992160 chr3L 12992249 12992263 6 103 19.0 14.0 16.5 0.3 117 chr3L 12992146 intergenic not near genes chr3L 12992204 intergenic not near genes chr3L 12992263 intergenic not near genes chr3L_6_12990001 chr3L_12990001 RAL-395 1835 chr3L 13085038 13085086 chr3L 13085143 13085181 22 104 6.0 15.0 10.5 1.9 143 chr3L 13085038 intergenic not near genes chr3L 13085110 intergenic not near genes chr3L 13085181 intergenic not near genes chr3L_22_13085001 chr3L_13085001 RAL-395 1836 chr3L 13095794 13095824 chr3L 13095907 13095937 15 113 12.5 0.0 6.2 2.1 143 chr3L 13095794 intergenic not near genes chr3L 13095866 intergenic not near genes chr3L 13095937 intergenic not near genes chr3L_15_13095001 chr3L_13095001 RAL-395 1837 chr3L 13182424 13182472 chr3L 13182528 13182576 14 103 10.5 7.5 9.0 1.4 152 chr3L 13182424 intergenic not near genes chr3L 13182500 intergenic not near genes chr3L 13182576 intergenic not near genes chr3L_14_13180001 chr3L_13180001 RAL-395 1838 chr3L 13230139 13230140 chr3L 13230252 13230253 4 113 20.5 0.5 10.5 0.3 114 chr3L 13230139 intron caps + chr3L 13230196 intron caps + chr3L 13230253 intron caps + chr3L_4_13230001 chr3L_13230001 RAL-395 1839 chr3L 13257229 13257284 chr3L 13257338 13257393 28 109 6.0 8.0 7.0 3.5 164 chr3L 13257229 intron caps + chr3L 13257311 intron caps + chr3L 13257393 intron caps + chr3L_28_13255001 chr3L_13255001 RAL-395 1840 chr3L 13337148 13337154 chr3L 13337265 13337271 5 117 0.0 10.0 5.0 0.8 123 chr3L 13337148 intergenic not near genes chr3L 13337210 intergenic not near genes chr3L 13337271 intergenic not near genes chr3L_5_13335001 chr3L_13335001 RAL-395 1841 chr3L 13375886 13375906 chr3L 13375992 13376012 6 106 15.5 4.0 9.8 0.6 126 chr3L 13375886 intergenic not near genes chr3L 13375949 intergenic not near genes chr3L 13376012 intergenic not near genes chr3L_6_13375001 chr3L_13375001 RAL-395 1842 chr3L 13477002 13477013 chr3L 13477105 13477116 4 102 0.0 7.0 3.5 0.9 114 chr3L 13477002 intergenic not near genes chr3L 13477059 intergenic stv + chr3L 13477116 intergenic stv + chr3L_4_13475001 chr3L_13475001 RAL-395 1843 chr3L 13477014 13477036 chr3L 13477098 13477139 9 101 0.0 5.5 2.8 2.4 125 chr3L 13477014 intergenic not near genes chr3L 13477076 intergenic stv + chr3L 13477139 intergenic stv + chr3L_9_13475001 chr3L_13475001 RAL-395 1844 chr3L 13525134 13525184 chr3L 13532956 13533006 roo 22 7822 7.0 13.0 10.0 2.0 7872 chr3L 13525134 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13533006 intergenic not near genes chr3L_22_13525001 chr3L_13525001 RAL-395 1845 chr3L 13574605 13574620 chr3L 13580142 13580157 Rt1c 13 5537 15.5 18.0 16.8 0.7 5552 chr3L 13574605 intron bru-3 - chr3L 13577381 intron bru-3 - chr3L 13580157 intron bru-3 - chr3L_13_13575001 chr3L_13575001 RAL-395 1846 chr3L 13584056 13584108 chr3L 13584168 13584221 16 112 2.5 10.0 6.2 2.2 165 chr3L 13584056 intron bru-3 - chr3L 13584138 intron bru-3 - chr3L 13584221 exon bru-3 - chr3L_16_13580001 chr3L_13580001 RAL-395 1847 chr3L 13615034 13615092 chr3L 13615158 13615216 26 124 4.0 4.0 4.0 5.2 182 chr3L 13615034 intron bru-3 - chr3L 13615125 intron bru-3 - chr3L 13615216 intron bru-3 - chr3L_26_13615001 chr3L_13615001 RAL-395 1848 chr3L 13629504 13629545 chr3L 13629641 13629682 18 137 11.0 10.0 10.5 1.6 178 chr3L 13629504 intron bru-3 - chr3L 13629593 intron bru-3 - chr3L 13629682 intron bru-3 - chr3L_18_13625001 chr3L_13625001 RAL-395 1849 chr3L 13677509 13677562 chr3L 13677612 13677651 25 102 6.0 7.5 6.8 3.2 142 chr3L 13677509 intron bru-3 - chr3L 13677580 intron bru-3 - chr3L 13677651 intron bru-3 - chr3L_25_13675001 chr3L_13675001 RAL-395 1850 chr3L 13692564 13692618 chr3L 13692666 13692720 21 102 5.5 6.5 6.0 3.0 156 chr3L 13692564 intron bru-3 - chr3L 13692642 intron bru-3 - chr3L 13692720 intron bru-3 - chr3L_21_13690001 chr3L_13690001 RAL-395 1851 chr3L 13722418 13722465 chr3L 13722522 13722569 26 103 9.5 8.5 9.0 2.6 151 chr3L 13722418 intron bru-3 - chr3L 13722494 intron bru-3 - chr3L 13722569 intron bru-3 - chr3L_26_13720001 chr3L_13720001 RAL-395 1852 chr3L 13745276 13745287 chr3L 13745390 13745402 5 115 5.0 0.5 2.8 1.3 126 chr3L 13745276 intron bru-3 - chr3L 13745339 intron bru-3 - chr3L 13745402 intron bru-3 - chr3L_5_13745001 chr3L_13745001 RAL-395 1853 chr3L 13767884 13767929 chr3L 13767991 13768036 18 107 12.0 4.5 8.2 2.0 152 chr3L 13767884 intron bru-3 - chr3L 13767960 intron bru-3 - chr3L 13768036 intron bru-3 - chr3L_18_13765001 chr3L_13765001 RAL-395 1854 chr3L 13768986 13769021 chr3L 13769102 13769136 12 115 0.0 5.5 2.8 3.2 150 chr3L 13768986 intron bru-3 - chr3L 13769061 intron bru-3 - chr3L 13769136 intron bru-3 - chr3L_12_13765001 chr3L_13765001 RAL-395 1855 chr3L 13804522 13804572 chr3L 13822834 13822883 roo 30 18312 7.5 10.0 8.8 3.1 18361 chr3L 13804522 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822883 intergenic not near genes chr3L_30_13810001 chr3L_13810001 RAL-395 1856 chr3L 13841129 13841162 chr3L 13841242 13841275 20 113 7.5 8.5 8.0 2.2 146 chr3L 13841129 3` UTR CG8757 - chr3L 13841202 3` UTR CG8757 - chr3L 13841275 exon CG8757 - chr3L_20_13840001 chr3L_13840001 RAL-395 1857 chr3L 13865607 13865660 chr3L 13865713 13865766 35 104 9.0 9.5 9.2 3.4 159 chr3L 13865607 intron CG8745 - chr3L 13865686 intron CG8745 - chr3L 13865766 intron CG8745 - chr3L_35_13865001 chr3L_13865001 RAL-395 1858 chr3L 13884376 13884381 chr3L 13884493 13884498 4 117 8.0 1.0 4.5 0.7 122 chr3L 13884376 intron dysc - chr3L 13884437 intron dysc - chr3L 13884498 intron dysc - chr3L_4_13880001 chr3L_13880001 RAL-395 1859 chr3L 13894139 13894156 chr3L 13894244 13894244 6 103 0.0 12.5 6.2 0.8 105 chr3L 13894139 intron dysc - chr3L 13894192 intron dysc - chr3L 13894244 intron dysc - chr3L_6_13890001 chr3L_13890001 RAL-395 1860 chr3L 13931309 13931370 chr3L 13931440 13931501 11 131 2.5 0.0 1.2 5.0 192 chr3L 13931309 intron Gl + chr3L 13931405 intron Gl + chr3L 13931501 intron Gl + chr3L_11_13930001 chr3L_13930001 RAL-395 1861 chr3L 14031260 14031308 chr3L 14031367 14031385 13 102 15.0 8.5 11.8 1.0 125 chr3L 14031260 intron endos - chr3L 14031322 intron endos - chr3L 14031385 intron endos - chr3L_13_14030001 chr3L_14030001 RAL-395 1862 chr3L 14061638 14061684 chr3L 14061753 14061796 9 114 4.5 4.5 4.5 1.6 158 chr3L 14061638 intron CG32138 + chr3L 14061717 intron CG32138 + chr3L 14061796 intron CG32138 + chr3L_9_14060001 chr3L_14060001 RAL-395 1863 chr3L 14099414 14099432 chr3L 14099530 14099548 10 115 4.5 17.5 11.0 0.8 134 chr3L 14099414 intergenic not near genes chr3L 14099481 intergenic not near genes chr3L 14099548 intergenic not near genes chr3L_10_14095001 chr3L_14095001 RAL-395 1864 chr3L 14107240 14107287 chr3L 14107340 14107390 8 103 8.5 0.0 4.2 1.5 150 chr3L 14107240 intron Sox21a - chr3L 14107315 intron Sox21a - chr3L 14107390 intron Sox21a - chr3L_8_14105001 chr3L_14105001 RAL-395 1865 chr3L 14175341 14175362 chr3L 14175514 14175536 9 174 8.0 9.0 8.5 0.9 195 chr3L 14175341 intergenic D - chr3L 14175438 intergenic D - chr3L 14175536 intergenic D - chr3L_9_14175001 chr3L_14175001 RAL-395 1866 chr3L 14177759 14177812 chr3L 14177865 14177918 37 105 6.5 11.0 8.8 3.8 159 chr3L 14177759 5` UTR D - chr3L 14177838 5` UTR D - chr3L 14177918 5` UTR D - chr3L_37_14175001 chr3L_14175001 RAL-395 1867 chr3L 14194698 14194742 chr3L 14194800 14194844 24 102 5.0 6.5 5.8 3.5 146 chr3L 14194698 intron nuf + chr3L 14194771 intron nuf + chr3L 14194844 intron nuf + chr3L_24_14190001 chr3L_14190001 RAL-395 1868 chr3L 14214820 14214871 chr3L 14214922 14214982 10 108 0.0 7.0 3.5 2.2 162 chr3L 14214820 intron nuf + chr3L 14214901 intron nuf + chr3L 14214982 intron nuf + chr3L_10_14210001 chr3L_14210001 RAL-395 1869 chr3L 14245545 14245593 chr3L 14245665 14245713 1360 27 119 6.5 7.0 6.8 3.5 168 chr3L 14245545 3` UTR CR44561 - chr3L 14245629 3` UTR CR44561 - chr3L 14245713 intergenic CR44561 -,CR44560 + chr3L_27_14245001 chr3L_14245001 RAL-395 1870 chr3L 14267384 14267405 chr3L 14271822 14271843 F-element 19 4438 6.5 0.0 3.2 4.5 4459 chr3L 14267384 intergenic not near genes chr3L 14269614 intergenic not near genes chr3L 14271843 intergenic not near genes chr3L_19_14265001 chr3L_14265001 RAL-395 1871 chr3L 14282560 14282605 chr3L 14282666 14282710 24 105 10.5 12.5 11.5 1.9 150 chr3L 14282560 intron fz + chr3L 14282635 intron fz + chr3L 14282710 intron fz + chr3L_24_14280001 chr3L_14280001 RAL-395 1872 chr3L 14286629 14286686 chr3L 14286733 14286788 24 104 7.5 6.5 7.0 3.0 159 chr3L 14286629 intron fz + chr3L 14286708 intron fz + chr3L 14286788 intron fz + chr3L_24_14285001 chr3L_14285001 RAL-395 1873 chr3L 14295954 14296008 chr3L 14296466 14296520 roo 27 511 13.5 10.5 12.0 2.1 566 chr3L 14295954 intron fz + chr3L 14296237 intron fz + chr3L 14296520 intron fz + chr3L_27_14295001 chr3L_14295001 RAL-395 1874 chr3L 14312000 14312046 chr3L 14316840 14316885 X-element 20 4839 14.0 7.5 10.8 1.7 4885 chr3L 14312000 exon fz + chr3L 14314442 intron fz + chr3L 14316885 intron fz + chr3L_20_14310001 chr3L_14310001 RAL-395 1875 chr3L 14320608 14320663 chr3L 14320772 14320827 29 164 7.5 5.5 6.5 3.9 219 chr3L 14320608 intron fz + chr3L 14320718 intron fz + chr3L 14320827 intron fz + chr3L_29_14320001 chr3L_14320001 RAL-395 1876 chr3L 14338273 14338321 chr3L 14338395 14338443 16 122 0.0 5.0 2.5 4.6 170 chr3L 14338273 intron fz + chr3L 14338358 intron fz + chr3L 14338443 intron fz + chr3L_16_14335001 chr3L_14335001 RAL-395 1877 chr3L 14441568 14441626 chr3L 14441743 14441801 21 175 6.0 2.5 4.2 4.0 233 chr3L 14441568 intron bbg - chr3L 14441684 intron bbg - chr3L 14441801 intron bbg - chr3L_21_14440001 chr3L_14440001 RAL-395 1878 chr3L 14444694 14444748 chr3L 14444895 14444949 29 201 5.0 7.0 6.0 4.1 255 chr3L 14444694 intron bbg - chr3L 14444822 intron bbg - chr3L 14444949 intron bbg - chr3L_29_14440001 chr3L_14440001 RAL-395 1879 chr3L 14455340 14455397 chr3L 14455447 14455502 9 106 2.5 0.0 1.2 4.1 162 chr3L 14455340 intron bbg - chr3L 14455421 intron bbg - chr3L 14455502 intron bbg - chr3L_9_14455001 chr3L_14455001 RAL-395 1880 chr3L 14468423 14468474 chr3L 14473655 14473706 copia 21 5232 5.5 3.0 4.2 4.0 5283 chr3L 14468423 intron bbg - chr3L 14471064 intron bbg - chr3L 14473706 intron bbg - chr3L_21_14470001 chr3L_14470001 RAL-395 1881 chr3L 14522075 14522127 chr3L 14522200 14522252 17 124 4.0 5.0 4.5 3.1 177 chr3L 14522075 intron bbg - chr3L 14522164 intron bbg - chr3L 14522252 intron bbg - chr3L_17_14520001 chr3L_14520001 RAL-395 1882 chr3L 14522797 14522853 chr3L 14522901 14522957 50 103 13.0 11.5 12.2 3.8 160 chr3L 14522797 intron bbg - chr3L 14522877 intron bbg - chr3L 14522957 intron bbg - chr3L_50_14520001 chr3L_14520001 RAL-395 1883 chr3L 14534735 14534756 chr3L 14534838 14534859 9 103 7.0 7.5 7.2 1.1 124 chr3L 14534735 intron bbg - chr3L 14534797 intron bbg - chr3L 14534859 intron bbg - chr3L_9_14530001 chr3L_14530001 RAL-395 1884 chr3L 14537242 14537299 chr3L 14537349 14537419 4 110 0.0 0.0 0.0 4.0 177 chr3L 14537242 3` UTR CG43246 + chr3L 14537330 intergenic CG43246 +,Mpcp + chr3L 14537419 intergenic CG43246 +,Mpcp + chr3L_4_14535001 chr3L_14535001 RAL-395 1885 chr3L 14546804 14546816 chr3L 14546931 14546943 6 127 0.0 10.0 5.0 1.0 139 chr3L 14546804 intron CG9238 - chr3L 14546874 intron CG9238 - chr3L 14546943 intron CG9238 - chr3L_6_14545001 chr3L_14545001 RAL-395 1886 chr3L 14596193 14596203 chr3L 14596315 14596325 4 121 9.0 3.5 6.2 0.6 132 chr3L 14596193 intron HGTX - chr3L 14596259 intron HGTX - chr3L 14596325 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-395 1887 chr3L 14653883 14653939 chr3L 14654046 14654102 33 162 9.5 3.0 6.2 4.6 219 chr3L 14653883 intron dlp + chr3L 14653992 intron dlp + chr3L 14654102 intron dlp + chr3L_33_14650001 chr3L_14650001 RAL-395 1888 chr3L 14702004 14702016 chr3L 14702102 14702121 4 102 0.0 8.5 4.2 0.8 117 chr3L 14702004 intron ome + chr3L 14702062 intron ome + chr3L 14702121 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-395 1889 chr3L 14721160 14721207 chr3L 14723029 14723076 Rt1c 26 1868 8.5 9.5 9.0 2.6 1916 chr3L 14721160 intron ome + chr3L 14722118 intron ome + chr3L 14723076 intron ome + chr3L_26_14720001 chr3L_14720001 RAL-395 1890 chr3L 14724785 14724836 chr3L 14724895 14724945 18 110 1.5 8.0 4.8 3.1 160 chr3L 14724785 intron ome + chr3L 14724865 intron ome + chr3L 14724945 intron ome + chr3L_18_14720001 chr3L_14720001 RAL-395 1891 chr3L 14725583 14725621 chr3L 14728603 14728641 Doc 9 3019 3.5 11.0 7.2 1.1 3058 chr3L 14725583 intron ome + chr3L 14727112 intron ome + chr3L 14728641 intron ome + chr3L_9_14725001 chr3L_14725001 RAL-395 1892 chr3L 14825145 14825159 chr3L 14832898 14832912 Stalker2 4 7750 2.5 16.5 9.5 0.4 7767 chr3L 14825145 intron CG17839 + chr3L 14829028 intron CG17839 + chr3L 14832912 intron CG17839 + chr3L_4_14825001 chr3L_14825001 RAL-395 1893 chr3L 14895010 14895041 chr3L 14895175 14895207 11 164 12.5 4.5 8.5 1.2 197 chr3L 14895010 intergenic not near genes chr3L 14895108 intergenic not near genes chr3L 14895207 intergenic not near genes chr3L_11_14895001 chr3L_14895001 RAL-395 1894 chr3L 14895043 14895064 chr3L 14895171 14895230 15 149 8.5 4.0 6.2 2.1 187 chr3L 14895043 intergenic not near genes chr3L 14895136 intergenic not near genes chr3L 14895230 intergenic not near genes chr3L_15_14895001 chr3L_14895001 RAL-395 1895 chr3L 14911031 14911079 chr3L 14913903 14913951 21 2872 52.5 58.0 55.2 0.4 2920 chr3L 14911031 intron DCX-EMAP + chr3L 14912491 intron DCX-EMAP + chr3L 14913951 intron DCX-EMAP + chr3L_21_14910001 chr3L_14910001 RAL-395 1896 chr3L 14933424 14933453 chr3L 14933532 14933561 16 107 4.0 8.5 6.2 2.2 137 chr3L 14933424 intron DCX-EMAP + chr3L 14933492 intron DCX-EMAP + chr3L 14933561 intron DCX-EMAP + chr3L_16_14930001 chr3L_14930001 RAL-395 1897 chr3L 14959962 14960015 chr3L 14960072 14960125 21 110 3.5 6.0 4.8 3.6 163 chr3L 14959962 intergenic not near genes chr3L 14960044 intergenic not near genes chr3L 14960125 intergenic not near genes chr3L_21_14960001 chr3L_14960001 RAL-395 1898 chr3L 14970738 14970760 chr3L 14971074 14971097 F-element 7 336 3.5 6.5 5.0 1.2 359 chr3L 14970738 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971097 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-395 1899 chr3L 15085023 15085081 chr3L 15086215 15086273 1360 26 1191 4.0 6.0 5.0 4.3 1250 chr3L 15085023 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086273 intron cp309 - chr3L_26_15085001 chr3L_15085001 RAL-395 1900 chr3L 15094948 15094963 chr3L 15095070 15095085 6 122 8.5 12.5 10.5 0.5 137 chr3L 15094948 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095016 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095085 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_6_15095001 chr3L_15095001 RAL-395 1901 chr3L 15104109 15104140 chr3L 15104245 15104276 20 136 7.5 7.0 7.2 2.4 167 chr3L 15104109 intron CTPsyn + chr3L 15104192 intron CTPsyn + chr3L 15104276 intron CTPsyn + chr3L_20_15100001 chr3L_15100001 RAL-395 1902 chr3L 15146139 15146172 chr3L 15146240 15146287 9 105 0.0 5.5 2.8 2.4 148 chr3L 15146139 3` UTR Pex3 + chr3L 15146213 3` UTR Pex3 + chr3L 15146287 3` UTR Pex3 + chr3L_9_15145001 chr3L_15145001 RAL-395 1903 chr3L 15151197 15151231 chr3L 15151406 15151440 12 207 7.0 6.5 6.8 1.5 243 chr3L 15151197 intron FucTA + chr3L 15151318 intron FucTA + chr3L 15151440 intron FucTA + chr3L_12_15150001 chr3L_15150001 RAL-395 1904 chr3L 15177344 15177372 chr3L 15177451 15177483 13 111 3.0 12.5 7.8 1.5 139 chr3L 15177344 intergenic not near genes chr3L 15177414 intergenic not near genes chr3L 15177483 intergenic not near genes chr3L_13_15175001 chr3L_15175001 RAL-395 1905 chr3L 15209042 15209091 chr3L 15209154 15209203 19 112 8.0 0.5 4.2 3.7 161 chr3L 15209042 intergenic CG6888 + chr3L 15209122 intergenic not near genes chr3L 15209203 intergenic not near genes chr3L_19_15205001 chr3L_15205001 RAL-395 1906 chr3L 15219717 15219775 chr3L 15219825 15219883 20 108 3.5 8.0 5.8 2.9 166 chr3L 15219717 intergenic not near genes chr3L 15219800 intergenic not near genes chr3L 15219883 intergenic not near genes chr3L_20_15215001 chr3L_15215001 RAL-395 1907 chr3L 11702386 11702386 chr3L 15253229 15253229 11 3550843 22.0 36.5 29.2 0.4 3550843 chr3L 11702386 intron CG11658 - chr3L 13477808 5` UTR stv + chr3L 15253229 intergenic not near genes chr3L_11_13475001 chr3L_13475001 RAL-395 1908 chr3L 15257407 15257447 chr3L 15257646 15257686 15 238 4.0 5.5 4.8 2.6 279 chr3L 15257407 intergenic not near genes chr3L 15257546 intergenic not near genes chr3L 15257686 intergenic not near genes chr3L_15_15255001 chr3L_15255001 RAL-395 1909 chr3L 15264036 15264050 chr3L 15264135 15264153 4 102 0.0 0.0 0.0 4.0 117 chr3L 15264036 intergenic not near genes chr3L 15264094 intergenic not near genes chr3L 15264153 intergenic not near genes chr3L_4_15260001 chr3L_15260001 RAL-395 1910 chr3L 15273345 15273361 chr3L 15273517 15273533 10 172 2.5 16.5 9.5 1.0 188 chr3L 15273345 intergenic not near genes chr3L 15273439 intergenic not near genes chr3L 15273533 intergenic not near genes chr3L_10_15270001 chr3L_15270001 RAL-395 1911 chr3L 15295745 15295799 chr3L 15298614 15298668 gypsy5 26 2868 8.5 10.0 9.2 2.5 2923 chr3L 15295745 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298668 intergenic Best4 + chr3L_26_15295001 chr3L_15295001 RAL-395 1912 chr3L 15321225 15321259 chr3L 15321333 15321367 16 108 8.0 6.0 7.0 2.0 142 chr3L 15321225 intergenic not near genes chr3L 15321296 intergenic not near genes chr3L 15321367 intergenic not near genes chr3L_16_15320001 chr3L_15320001 RAL-395 1913 chr3L 15423738 15423780 chr3L 15426608 15426650 opus 20 2870 8.0 7.5 7.8 2.3 2912 chr3L 15423738 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426650 intergenic not near genes chr3L_20_15425001 chr3L_15425001 RAL-395 1914 chr3L 15438346 15438403 chr3L 15438735 15438793 29 390 7.0 3.0 5.0 4.8 447 chr3L 15438346 intergenic not near genes chr3L 15438570 intergenic not near genes chr3L 15438793 intergenic not near genes chr3L_29_15435001 chr3L_15435001 RAL-395 1915 chr3L 15443561 15443614 chr3L 15443662 15443717 12 102 3.5 7.0 5.2 1.9 156 chr3L 15443561 intergenic not near genes chr3L 15443639 intergenic not near genes chr3L 15443717 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-395 1916 chr3L 15457250 15457260 chr3L 15457368 15457378 4 118 0.0 7.0 3.5 0.9 128 chr3L 15457250 intergenic CR45395 + chr3L 15457314 intergenic CR45395 + chr3L 15457378 intergenic CR45395 + chr3L_4_15455001 chr3L_15455001 RAL-395 1917 chr3L 15482289 15482347 chr3L 15482417 15482475 25 127 6.0 3.5 4.8 4.3 186 chr3L 15482289 intergenic not near genes chr3L 15482382 intergenic not near genes chr3L 15482475 intergenic not near genes chr3L_25_15480001 chr3L_15480001 RAL-395 1918 chr3L 15483889 15483911 chr3L 15484027 15484049 16 137 19.5 11.5 15.5 1.0 160 chr3L 15483889 intergenic not near genes chr3L 15483969 intergenic Ran-like - chr3L 15484049 intergenic Ran-like - chr3L_16_15480001 chr3L_15480001 RAL-395 1919 chr3L 15537897 15537935 chr3L 15538000 15538039 10 104 9.5 2.0 5.8 1.5 142 chr3L 15537897 intron CrebA + chr3L 15537968 intron CrebA + chr3L 15538039 intron CrebA + chr3L_10_15535001 chr3L_15535001 RAL-395 1920 chr3L 15540917 15540924 chr3L 15541029 15541036 5 111 19.5 10.0 14.8 0.3 119 chr3L 15540917 intron CrebA + chr3L 15540976 intron CrebA + chr3L 15541036 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-395 1921 chr3L 15541596 15541643 chr3L 15541713 15541760 21 117 13.0 8.5 10.8 1.8 164 chr3L 15541596 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541760 intron CrebA + chr3L_21_15540001 chr3L_15540001 RAL-395 1922 chr3L 15544260 15544290 chr3L 15544386 15544416 13 126 9.5 9.5 9.5 1.2 156 chr3L 15544260 intron CrebA + chr3L 15544338 intron CrebA + chr3L 15544416 intron CrebA + chr3L_13_15540001 chr3L_15540001 RAL-395 1923 chr3L 15554898 15554946 chr3L 15556710 15556759 S-element 20 1813 8.5 7.5 8.0 2.2 1861 chr3L 15554898 intron AGO2 + chr3L 15555828 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_20_15555001 chr3L_15555001 RAL-395 1924 chr3L 15598394 15598453 chr3L 15598529 15598589 16 136 7.5 4.5 6.0 2.3 195 chr3L 15598394 intron RhoGAP71E + chr3L 15598492 intron RhoGAP71E + chr3L 15598589 intron RhoGAP71E + chr3L_16_15595001 chr3L_15595001 RAL-395 1925 chr3L 15600172 15600196 chr3L 15600299 15600323 13 127 7.5 10.5 9.0 1.3 151 chr3L 15600172 intron RhoGAP71E + chr3L 15600248 intron RhoGAP71E + chr3L 15600323 intron RhoGAP71E + chr3L_13_15600001 chr3L_15600001 RAL-395 1926 chr3L 15633157 15633200 chr3L 15633263 15633306 16 106 9.5 1.0 5.2 2.6 149 chr3L 15633157 intron comm3 - chr3L 15633232 intron comm3 - chr3L 15633306 intron comm3 - chr3L_16_15630001 chr3L_15630001 RAL-395 1927 chr3L 15641789 15641807 chr3L 15641897 15641918 5 110 0.0 9.0 4.5 0.9 129 chr3L 15641789 intron comm3 - chr3L 15641854 intron comm3 - chr3L 15641918 intron comm3 - chr3L_5_15640001 chr3L_15640001 RAL-395 1928 chr3L 15691382 15691446 chr3L 15691495 15691539 23 109 0.0 8.0 4.0 4.6 157 chr3L 15691382 intron CG34451 - chr3L 15691460 intron CG34451 - chr3L 15691539 intron CG34451 - chr3L_23_15690001 chr3L_15690001 RAL-395 1929 chr3L 15756855 15756894 chr3L 15756964 15756998 14 108 12.5 0.0 6.2 1.9 143 chr3L 15756855 intergenic not near genes chr3L 15756926 intergenic not near genes chr3L 15756998 intergenic not near genes chr3L_14_15755001 chr3L_15755001 RAL-395 1930 chr3L 15811525 15811576 chr3L 15811636 15811684 13 110 0.5 6.0 3.2 3.1 159 chr3L 15811525 intron fwe - chr3L 15811604 intron fwe - chr3L 15811684 intron fwe - chr3L_13_15810001 chr3L_15810001 RAL-395 1931 chr3L 15827708 15827762 chr3L 15831969 15832020 7 4260 49.5 33.0 41.2 0.2 4312 chr3L 15827708 intron dbo + chr3L 15829864 exon dbo + chr3L 15832020 intergenic dbo +,CG12713 + chr3L_7_15825001 chr3L_15825001 RAL-395 1932 chr3L 15832230 15832283 chr3L 15832337 15832390 29 106 8.5 10.5 9.5 2.8 160 chr3L 15832230 intergenic dbo +,CG12713 + chr3L 15832310 intergenic CG12713 +,dbo + chr3L 15832390 intergenic CG12713 +,dbo + chr3L_29_15830001 chr3L_15830001 RAL-395 1933 chr3L 15840408 15840468 chr3L 15840522 15840579 11 113 3.5 5.0 4.2 2.1 171 chr3L 15840408 intron CG32150 - chr3L 15840494 intron CG32150 - chr3L 15840579 intron CG32150 - chr3L_11_15840001 chr3L_15840001 RAL-395 1934 chr3L 15899203 15899226 chr3L 15899795 15899819 jockey 21 592 22.5 5.5 14.0 1.4 616 chr3L 15899203 intergenic pHCl - chr3L 15899511 intergenic pHCl - chr3L 15899819 intergenic sff - chr3L_21_15895001 chr3L_15895001 RAL-395 1935 chr3L 15899227 15899258 chr3L 15899789 15899851 jockey 28 590 13.0 5.5 9.2 2.7 624 chr3L 15899227 intergenic pHCl - chr3L 15899539 intergenic not near genes chr3L 15899851 intergenic sff - chr3L_28_15895001 chr3L_15895001 RAL-395 1936 chr3L 15929173 15929227 chr3L 15938346 15938400 roo 23 9173 4.0 5.5 4.8 4.0 9227 chr3L 15929173 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938400 intron Pka-C3 - chr3L_23_15930001 chr3L_15930001 RAL-395 1937 chr3L 15946481 15946533 chr3L 15946593 15946645 8 112 7.5 0.0 3.8 1.7 164 chr3L 15946481 intron Pka-C3 - chr3L 15946563 intron Pka-C3 - chr3L 15946645 intron Pka-C3 - chr3L_8_15945001 chr3L_15945001 RAL-395 1938 chr3L 15948717 15948774 chr3L 15948826 15948857 30 108 8.5 8.5 8.5 3.2 140 chr3L 15948717 intron Pka-C3 - chr3L 15948787 intron Pka-C3 - chr3L 15948857 intron Pka-C3 - chr3L_30_15945001 chr3L_15945001 RAL-395 1939 chr3L 15981654 15981707 chr3L 15981766 15981817 7 111 4.0 7.5 5.8 1.0 163 chr3L 15981654 intron,3` UTR brm -,CG17027 + chr3L 15981736 intron,3` UTR brm -,CG17027 + chr3L 15981817 intron,3` UTR brm -,CG17027 + chr3L_7_15980001 chr3L_15980001 RAL-395 1940 chr3L 15989211 15989225 chr3L 15989320 15989334 10 108 7.5 9.5 8.5 1.1 123 chr3L 15989211 intron Hip14 + chr3L 15989272 intron Hip14 + chr3L 15989334 intron Hip14 + chr3L_10_15985001 chr3L_15985001 RAL-395 1941 chr3L 16038206 16038258 chr3L 16038349 16038401 27 142 9.5 2.5 6.0 3.9 195 chr3L 16038206 intergenic th - chr3L 16038304 intergenic th - chr3L 16038401 intergenic th - chr3L_27_16035001 chr3L_16035001 RAL-395 1942 chr3L 16117343 16117402 chr3L 16121664 16121717 19 4315 48.5 49.5 49.0 0.4 4374 chr3L 16117343 intron Taf4 + chr3L 16119530 exon Taf4 + chr3L 16121717 intergenic Taf4 +,CG12272 + chr3L_19_16115001 chr3L_16115001 RAL-395 1943 chr3L 16162586 16162626 chr3L 16162696 16162736 24 110 6.0 7.5 6.8 3.1 150 chr3L 16162586 intron CG5151 - chr3L 16162661 intron CG5151 - chr3L 16162736 intron CG5151 - chr3L_24_16160001 chr3L_16160001 RAL-395 1944 chr3L 16184096 16184130 chr3L 16188941 16188975 X-element 25 4845 4.5 10.0 7.2 3.0 4879 chr3L 16184096 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16188975 intergenic not near genes chr3L_25_16185001 chr3L_16185001 RAL-395 1945 chr3L 16212786 16212830 chr3L 16212903 16212947 17 115 10.5 0.0 5.2 2.7 161 chr3L 16212786 intergenic CG13073 - chr3L 16212866 intergenic CG13073 - chr3L 16212947 intergenic CG13073 - chr3L_17_16210001 chr3L_16210001 RAL-395 1946 chr3L 16359933 16360005 chr3L 16360229 16360284 8 291 0.0 5.0 2.5 2.3 351 chr3L 16359933 intron CG45057 - chr3L 16360108 intron CG45057 - chr3L 16360284 intron CG45057 - chr3L_8_16360001 chr3L_16360001 RAL-395 1947 chr3L 16387965 16387970 chr3L 16388620 16388625 4 655 27.0 43.0 35.0 0.1 660 chr3L 16387965 exon RAF2 + chr3L 16388295 exon RAF2 + chr3L 16388625 exon RAF2 + chr3L_4_16385001 chr3L_16385001 RAL-395 1948 chr3L 16387978 16388018 chr3L 16388089 16388130 28 111 8.5 20.5 14.5 1.8 152 chr3L 16387978 exon RAF2 + chr3L 16388054 exon RAF2 + chr3L 16388130 exon RAF2 + chr3L_28_16385001 chr3L_16385001 RAL-395 1949 chr3L 16443805 16443878 chr3L 16446190 16446244 Doc 14 2374 0.0 10.0 5.0 2.3 2439 chr3L 16443805 intron,intron CG33158 +,dsx-c73A - chr3L 16445024 intron,intron CG33158 +,dsx-c73A - chr3L 16446244 intron,intron CG33158 +,dsx-c73A - chr3L_14_16445001 chr3L_16445001 RAL-395 1950 chr3L 16457503 16457556 chr3L 16457625 16457677 12 121 2.0 4.0 3.0 3.0 174 chr3L 16457503 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457677 intron CG33158 + chr3L_12_16455001 chr3L_16455001 RAL-395 1951 chr3L 16473713 16473760 chr3L 16473816 16473828 12 97 7.0 5.0 6.0 1.7 115 chr3L 16473713 intron,intron CG33158 +,aos - chr3L 16473770 intron,intron CG33158 +,aos - chr3L 16473828 intron,intron CG33158 +,aos - chr3L_12_16470001 chr3L_16470001 RAL-395 1952 chr3L 16493957 16494004 chr3L 16494497 16494547 jockey 23 543 13.0 9.5 11.2 1.9 590 chr3L 16493957 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494547 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_23_16490001 chr3L_16490001 RAL-395 1953 chr3L 16506134 16506141 chr3L 16506305 16506312 4 171 0.0 7.5 3.8 0.8 178 chr3L 16506134 intron CG43373 - chr3L 16506223 intron CG43373 - chr3L 16506312 intron CG43373 - chr3L_4_16505001 chr3L_16505001 RAL-395 1954 chr3L 16533537 16533587 chr3L 16533674 16533724 14 136 3.5 10.0 6.8 1.8 187 chr3L 16533537 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533724 intron CG43373 - chr3L_14_16530001 chr3L_16530001 RAL-395 1955 chr3L 16540029 16540081 chr3L 16540143 16540195 18 113 6.5 8.0 7.2 2.2 166 chr3L 16540029 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540195 intron CG43373 - chr3L_18_16540001 chr3L_16540001 RAL-395 1956 chr3L 16563207 16563231 chr3L 16563314 16563338 17 107 10.5 0.0 5.2 2.7 131 chr3L 16563207 intergenic Mipp1 - chr3L 16563272 intergenic Mipp1 - chr3L 16563338 intergenic Mipp1 - chr3L_17_16560001 chr3L_16560001 RAL-395 1957 chr3L 16616487 16616534 chr3L 16621841 16621888 297 24 5354 9.5 10.0 9.8 2.2 5401 chr3L 16616487 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621888 3` UTR Abl - chr3L_24_16615001 chr3L_16615001 RAL-395 1958 chr3L 16684013 16684022 chr3L 16689260 16689269 copia 4 5247 2.5 6.5 4.5 0.7 5256 chr3L 16684013 intron,intron Lasp -,CG43954 - chr3L 16686641 intron,intron Lasp -,CG43954 - chr3L 16689269 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-395 1959 chr3L 16747375 16747427 chr3L 16747667 16747719 21 291 4.0 3.5 3.8 4.4 344 chr3L 16747375 intergenic not near genes chr3L 16747547 intergenic not near genes chr3L 16747719 intergenic not near genes chr3L_21_16745001 chr3L_16745001 RAL-395 1960 chr3L 16757616 16757665 chr3L 16757732 16757781 25 116 4.5 6.5 5.5 3.8 165 chr3L 16757616 intergenic not near genes chr3L 16757698 intergenic not near genes chr3L 16757781 intergenic not near genes chr3L_25_16755001 chr3L_16755001 RAL-395 1961 chr3L 16800555 16800609 chr3L 16800719 16800773 22 164 4.0 8.5 6.2 3.1 218 chr3L 16800555 intron CG9674 - chr3L 16800664 intron CG9674 - chr3L 16800773 intron CG9674 - chr3L_22_16800001 chr3L_16800001 RAL-395 1962 chr3L 16808017 16808070 chr3L 16808119 16808174 17 102 10.0 3.0 6.5 2.3 157 chr3L 16808017 intron nudC + chr3L 16808096 intron nudC + chr3L 16808174 intron nudC + chr3L_17_16805001 chr3L_16805001 RAL-395 1963 chr3L 16818722 16818777 chr3L 16818824 16818879 33 102 9.5 9.5 9.5 3.1 157 chr3L 16818722 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818879 intron,intron nudC +,CG13024 - chr3L_33_16815001 chr3L_16815001 RAL-395 1964 chr3L 16836884 16836938 chr3L 16837008 16837062 34 123 8.0 6.0 7.0 4.2 178 chr3L 16836884 intergenic not near genes chr3L 16836973 intergenic not near genes chr3L 16837062 intergenic not near genes chr3L_34_16835001 chr3L_16835001 RAL-395 1965 chr3L 16844995 16845042 chr3L 16845134 16845176 19 137 8.5 10.0 9.2 1.9 181 chr3L 16844995 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845086 intergenic CG9669 -,CG9715 + chr3L 16845176 intergenic CG9669 -,CG9715 + chr3L_19_16845001 chr3L_16845001 RAL-395 1966 chr3L 16882292 16882307 chr3L 16882406 16882421 8 112 7.0 18.5 12.8 0.6 129 chr3L 16882292 intron Lmpt + chr3L 16882356 intron Lmpt + chr3L 16882421 intron Lmpt + chr3L_8_16880001 chr3L_16880001 RAL-395 1967 chr3L 16945707 16945757 chr3L 16954886 16954936 roo 33 9179 10.5 11.5 11.0 2.8 9229 chr3L 16945707 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954936 5` UTR Nc73EF + chr3L_33_16950001 chr3L_16950001 RAL-395 1968 chr3L 17026762 17026823 chr3L 17026869 17026915 36 105 15.0 8.5 11.8 2.8 153 chr3L 17026762 exon Fit2 + chr3L 17026838 3` UTR Fit2 + chr3L 17026915 3` UTR Fit2 + chr3L_36_17025001 chr3L_17025001 RAL-395 1969 chr3L 17027151 17027187 chr3L 17027269 17027305 15 118 2.5 7.5 5.0 2.5 154 chr3L 17027151 intergenic Fit2 +,CG7730 + chr3L 17027228 intergenic Fit2 +,CG7730 + chr3L 17027305 intergenic Fit2 +,CG7730 + chr3L_15_17025001 chr3L_17025001 RAL-395 1970 chr3L 17034909 17034951 chr3L 17035123 17035165 G2 19 214 4.5 6.0 5.2 3.1 256 chr3L 17034909 intergenic not near genes chr3L 17035037 intergenic not near genes chr3L 17035165 intergenic not near genes chr3L_19_17035001 chr3L_17035001 RAL-395 1971 chr3L 17084981 17085028 chr3L 17094156 17094203 roo 16 9174 11.5 6.0 8.8 1.6 9222 chr3L 17084981 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094203 intron Rbp6 - chr3L_16_17085001 chr3L_17085001 RAL-395 1972 chr3L 17103100 17103132 chr3L 17103203 17103235 22 103 15.0 12.5 13.8 1.5 135 chr3L 17103100 intron Rbp6 - chr3L 17103168 intron Rbp6 - chr3L 17103235 intron Rbp6 - chr3L_22_17100001 chr3L_17100001 RAL-395 1973 chr3L 17120631 17120678 chr3L 17120733 17120780 17 102 6.0 7.0 6.5 2.3 149 chr3L 17120631 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120780 intron Rbp6 - chr3L_17_17120001 chr3L_17120001 RAL-395 1974 chr3L 17142706 17142754 chr3L 17142960 17142998 37 253 12.5 12.0 12.2 2.8 292 chr3L 17142706 intron Rbp6 - chr3L 17142852 intron Rbp6 - chr3L 17142998 intron Rbp6 - chr3L_37_17140001 chr3L_17140001 RAL-395 1975 chr3L 17146934 17146986 chr3L 17147042 17147094 30 108 6.0 9.0 7.5 3.5 160 chr3L 17146934 intron Rbp6 - chr3L 17147014 intron Rbp6 - chr3L 17147094 intron Rbp6 - chr3L_30_17145001 chr3L_17145001 RAL-395 1976 chr3L 17149140 17149157 chr3L 17149247 17149264 13 107 16.0 0.0 8.0 1.4 124 chr3L 17149140 intron Rbp6 - chr3L 17149202 intron Rbp6 - chr3L 17149264 intron Rbp6 - chr3L_13_17145001 chr3L_17145001 RAL-395 1977 chr3L 17237358 17237410 chr3L 17237536 17237588 17 178 3.5 4.5 4.0 3.4 230 chr3L 17237358 intron Rbp6 - chr3L 17237473 intron Rbp6 - chr3L 17237588 intron Rbp6 - chr3L_17_17235001 chr3L_17235001 RAL-395 1978 chr3L 17272216 17272246 chr3L 17272374 17272405 5 159 8.0 2.5 5.2 0.8 189 chr3L 17272216 intergenic not near genes chr3L 17272310 intergenic not near genes chr3L 17272405 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-395 1979 chr3L 17272247 17272266 chr3L 17272373 17272425 5 149 6.0 2.5 4.2 1.0 178 chr3L 17272247 intergenic not near genes chr3L 17272336 intergenic not near genes chr3L 17272425 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-395 1980 chr3L 17331043 17331097 chr3L 17331158 17331213 19 116 5.0 5.5 5.2 3.1 170 chr3L 17331043 intergenic not near genes chr3L 17331128 intergenic not near genes chr3L 17331213 intergenic not near genes chr3L_19_17330001 chr3L_17330001 RAL-395 1981 chr3L 17344614 17344657 chr3L 17344714 17344765 26 108 9.5 9.0 9.2 2.5 151 chr3L 17344614 exon brv2 - chr3L 17344690 5` UTR brv2 - chr3L 17344765 intergenic brv2 -,Mip - chr3L_26_17340001 chr3L_17340001 RAL-395 1982 chr3L 17386775 17386825 chr3L 17386878 17386928 33 102 11.0 14.5 12.8 2.4 153 chr3L 17386775 intron CG13731 - chr3L 17386852 intron CG13731 - chr3L 17386928 intron CG13731 - chr3L_33_17385001 chr3L_17385001 RAL-395 1983 chr3L 12462305 12462306 chr3L 17395609 17395610 4 4933304 14.0 34.0 24.0 0.2 4933305 chr3L 12462305 intergenic eyg - chr3L 14928958 intron DCX-EMAP + chr3L 17395610 intergenic blot - chr3L_4_14925001 chr3L_14925001 RAL-395 1984 chr3L 17492453 17492502 chr3L 17492788 17492837 20 334 11.0 3.5 7.2 2.4 384 chr3L 17492453 intron Oatp74D + chr3L 17492645 intron Oatp74D + chr3L 17492837 intron Oatp74D + chr3L_20_17490001 chr3L_17490001 RAL-395 1985 chr3L 17510721 17510762 chr3L 17510831 17510872 22 110 12.0 9.5 10.8 1.9 151 chr3L 17510721 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510872 intron Oatp74D + chr3L_22_17510001 chr3L_17510001 RAL-395 1986 chr3L 17516954 17517008 chr3L 17524537 17524592 412 35 7583 10.5 10.5 10.5 3.0 7638 chr3L 17516954 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524592 3` UTR CG7564 + chr3L_35_17520001 chr3L_17520001 RAL-395 1987 chr3L 17585330 17585365 chr3L 17585630 17585664 16 301 19.0 59.5 39.2 0.4 334 chr3L 17585330 intron Eip74EF - chr3L 17585497 intron Eip74EF - chr3L 17585664 intron Eip74EF - chr3L_16_17585001 chr3L_17585001 RAL-395 1988 chr3L 17592761 17592818 chr3L 17592878 17592935 20 117 7.0 8.0 7.5 2.4 174 chr3L 17592761 intron Eip74EF - chr3L 17592848 intron Eip74EF - chr3L 17592935 intron Eip74EF - chr3L_20_17590001 chr3L_17590001 RAL-395 1989 chr3L 17691992 17691996 chr3L 17692101 17692105 4 109 0.0 15.5 7.8 0.5 113 chr3L 17691992 intron Ccn + chr3L 17692048 intron Ccn + chr3L 17692105 intron Ccn + chr3L_4_17690001 chr3L_17690001 RAL-395 1990 chr3L 17730827 17730876 chr3L 17738183 17738232 mdg1 14 7356 7.0 3.5 5.2 2.3 7405 chr3L 17730827 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738232 intron Ccn + chr3L_14_17730001 chr3L_17730001 RAL-395 1991 chr3L 17787664 17787682 chr3L 17787783 17787801 6 118 9.5 2.0 5.8 0.9 137 chr3L 17787664 intergenic not near genes chr3L 17787732 intergenic not near genes chr3L 17787801 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-395 1992 chr3L 17789823 17789876 chr3L 17789921 17789978 30 101 5.5 8.5 7.0 3.8 155 chr3L 17789823 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789978 intergenic not near genes chr3L_30_17785001 chr3L_17785001 RAL-395 1993 chr3L 17790577 17790633 chr3L 17790868 17790924 19 291 8.5 2.5 5.5 2.9 347 chr3L 17790577 intergenic not near genes chr3L 17790750 intergenic CG42815 - chr3L 17790924 intergenic CG42815 - chr3L_19_17790001 chr3L_17790001 RAL-395 1994 chr3L 17799785 17799823 chr3L 17801598 17801636 S-element 22 1813 6.0 6.0 6.0 3.1 1851 chr3L 17799785 intron NUCB1 - chr3L 17800710 intron NUCB1 - chr3L 17801636 intron NUCB1 - chr3L_22_17800001 chr3L_17800001 RAL-395 1995 chr3L 17834300 17834352 chr3L 17834490 17834542 15 190 2.5 4.5 3.5 3.3 242 chr3L 17834300 intron Grd + chr3L 17834421 intron Grd + chr3L 17834542 intron Grd + chr3L_15_17830001 chr3L_17830001 RAL-395 1996 chr3L 17837599 17837652 chr3L 17837713 17837766 39 113 8.0 13.0 10.5 3.4 167 chr3L 17837599 exon Grd + chr3L 17837682 intron Grd + chr3L 17837766 exon Grd + chr3L_39_17835001 chr3L_17835001 RAL-395 1997 chr3L 17921852 17921884 chr3L 17921965 17921997 7 113 6.5 3.5 5.0 1.2 145 chr3L 17921852 intergenic not near genes chr3L 17921924 intergenic not near genes chr3L 17921997 intergenic not near genes chr3L_7_17920001 chr3L_17920001 RAL-395 1998 chr3L 17991552 17991588 chr3L 17991656 17991692 23 104 10.0 5.5 7.8 2.6 140 chr3L 17991552 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991692 intron Eip75B - chr3L_23_17990001 chr3L_17990001 RAL-395 1999 chr3L 18000647 18000703 chr3L 18000749 18000805 35 103 10.5 11.0 10.8 3.0 158 chr3L 18000647 intron Eip75B - chr3L 18000726 intron Eip75B - chr3L 18000805 intron Eip75B - chr3L_35_18000001 chr3L_18000001 RAL-395 2000 chr3L 18009921 18009975 chr3L 18010432 18010486 35 511 5.0 13.0 9.0 3.5 565 chr3L 18009921 intron Eip75B - chr3L 18010204 intron Eip75B - chr3L 18010486 intron Eip75B - chr3L_35_18010001 chr3L_18010001 RAL-395 2001 chr3L 18024045 18024058 chr3L 18024174 18024187 6 128 3.5 12.0 7.8 0.7 142 chr3L 18024045 intron Eip75B - chr3L 18024116 intron Eip75B - chr3L 18024187 intron Eip75B - chr3L_6_18020001 chr3L_18020001 RAL-395 2002 chr3L 18047684 18047737 chr3L 18056766 18056820 roo 19 9083 5.5 3.5 4.5 3.5 9136 chr3L 18047684 intron Eip75B - chr3L 18052252 intron Eip75B - chr3L 18056820 intron Eip75B - chr3L_19_18050001 chr3L_18050001 RAL-395 2003 chr3L 18064036 18064075 chr3L 18064148 18064186 13 112 1.5 5.0 3.2 3.1 150 chr3L 18064036 intron Eip75B - chr3L 18064111 intron Eip75B - chr3L 18064186 intron Eip75B - chr3L_13_18060001 chr3L_18060001 RAL-395 2004 chr3L 18106231 18106265 chr3L 18106376 18106410 10 145 10.5 0.0 5.2 1.6 179 chr3L 18106231 intergenic CG13698 -,mRpS26 + chr3L 18106320 intergenic CG13698 -,mRpS26 + chr3L 18106410 intergenic mRpS26 +,CG13698 - chr3L_10_18105001 chr3L_18105001 RAL-395 2005 chr3L 18124401 18124416 chr3L 18124511 18124526 4 110 5.0 10.5 7.8 0.5 125 chr3L 18124401 intergenic not near genes chr3L 18124464 intergenic not near genes chr3L 18124526 intergenic not near genes chr3L_4_18120001 chr3L_18120001 RAL-395 2006 chr3L 18172665 18172701 chr3L 18172767 18172803 15 102 9.0 6.0 7.5 1.8 138 chr3L 18172665 intron W - chr3L 18172734 intron W - chr3L 18172803 intron W - chr3L_15_18170001 chr3L_18170001 RAL-395 2007 chr3L 18186611 18186617 chr3L 18186776 18186782 6 165 11.5 4.5 8.0 0.7 171 chr3L 18186611 intergenic not near genes chr3L 18186696 intergenic not near genes chr3L 18186782 intergenic not near genes chr3L_6_18185001 chr3L_18185001 RAL-395 2008 chr3L 18189563 18189583 chr3L 18190190 18190210 S-element 7 627 12.5 9.0 10.8 0.6 647 chr3L 18189563 intergenic not near genes chr3L 18189886 intergenic not near genes chr3L 18190210 intergenic not near genes chr3L_7_18185001 chr3L_18185001 RAL-395 2009 chr3L 18198929 18198931 chr3L 24821493 24821494 9 6622563 1.0 28.0 14.5 0.6 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_9_21510001 chr3L_21510001 RAL-395 2010 chr3L 18257116 18257160 chr3L 18257220 18257264 19 104 5.0 2.5 3.8 4.0 148 chr3L 18257116 intergenic not near genes chr3L 18257190 intergenic not near genes chr3L 18257264 intergenic not near genes chr3L_19_18255001 chr3L_18255001 RAL-395 2011 chr3L 18262445 18262479 chr3L 18262553 18262588 22 109 10.5 2.5 6.5 2.9 143 chr3L 18262445 intergenic not near genes chr3L 18262516 intergenic not near genes chr3L 18262588 intergenic not near genes chr3L_22_18260001 chr3L_18260001 RAL-395 2012 chr3L 18301330 18301380 chr3L 18301445 18301495 14 115 0.0 5.0 2.5 4.0 165 chr3L 18301330 intergenic CG13700 - chr3L 18301412 intergenic CG13700 - chr3L 18301495 intergenic CG13700 - chr3L_14_18300001 chr3L_18300001 RAL-395 2013 chr3L 18318715 18318769 chr3L 18318825 18318880 30 111 6.5 5.5 6.0 4.3 165 chr3L 18318715 intergenic not near genes chr3L 18318798 intergenic not near genes chr3L 18318880 intergenic not near genes chr3L_30_18315001 chr3L_18315001 RAL-395 2014 chr3L 18376058 18376113 chr3L 18376171 18376228 6 115 4.0 6.5 5.2 1.0 170 chr3L 18376058 intergenic not near genes chr3L 18376143 intergenic not near genes chr3L 18376228 intergenic not near genes chr3L_6_18375001 chr3L_18375001 RAL-395 2015 chr3L 18406107 18406154 chr3L 18406209 18406256 11 102 5.5 6.0 5.8 1.6 149 chr3L 18406107 intergenic not near genes chr3L 18406182 intergenic not near genes chr3L 18406256 intergenic not near genes chr3L_11_18405001 chr3L_18405001 RAL-395 2016 chr3L 18408711 18408755 chr3L 18408822 18408867 13 112 5.0 5.0 5.0 2.2 156 chr3L 18408711 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408867 intergenic not near genes chr3L_13_18405001 chr3L_18405001 RAL-395 2017 chr3L 9013689 9013693 chr3L 18417064 18417066 8 9403375 45.0 36.5 40.8 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-395 2018 chr3L 18436035 18436088 chr3L 18436159 18436212 21 124 4.0 4.5 4.2 4.0 177 chr3L 18436035 intergenic not near genes chr3L 18436124 intergenic not near genes chr3L 18436212 intergenic not near genes chr3L_21_18435001 chr3L_18435001 RAL-395 2019 chr3L 18448590 18448616 chr3L 18448708 18448734 9 118 7.5 4.5 6.0 1.3 144 chr3L 18448590 intergenic not near genes chr3L 18448662 intergenic not near genes chr3L 18448734 intergenic not near genes chr3L_9_18445001 chr3L_18445001 RAL-395 2020 chr3L 18456250 18456302 chr3L 18456364 18456416 21 114 5.5 9.0 7.2 2.6 166 chr3L 18456250 intergenic CR44670 - chr3L 18456333 intergenic CR44670 - chr3L 18456416 3` UTR CR44670 - chr3L_21_18455001 chr3L_18455001 RAL-395 2021 chr3L 18464460 18464513 chr3L 18464572 18464616 16 109 8.5 6.5 7.5 1.9 156 chr3L 18464460 intergenic not near genes chr3L 18464538 intergenic not near genes chr3L 18464616 intergenic not near genes chr3L_16_18460001 chr3L_18460001 RAL-395 2022 chr3L 18506112 18506146 chr3L 18509601 18509635 F-element 19 3488 10.5 9.5 10.0 1.7 3523 chr3L 18506112 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509635 intergenic not near genes chr3L_19_18505001 chr3L_18505001 RAL-395 2023 chr3L 18506148 18506161 chr3L 18509599 18509649 F-element 5 3481 7.5 9.0 8.2 0.5 3501 chr3L 18506148 intergenic not near genes chr3L 18507898 intergenic not near genes chr3L 18509649 intergenic not near genes chr3L_5_18505001 chr3L_18505001 RAL-395 2024 chr3L 18528604 18528650 chr3L 18537791 18537837 roo 23 9187 6.0 4.5 5.2 3.7 9233 chr3L 18528604 intergenic not near genes chr3L 18533220 intergenic not near genes chr3L 18537837 intergenic not near genes chr3L_23_18530001 chr3L_18530001 RAL-395 2025 chr3L 18538607 18538655 chr3L 18539126 18539174 24 518 8.5 8.0 8.2 2.6 567 chr3L 18538607 intergenic not near genes chr3L 18538890 intergenic not near genes chr3L 18539174 intergenic not near genes chr3L_24_18535001 chr3L_18535001 RAL-395 2026 chr3L 18593919 18593981 chr3L 18595925 18595987 Doc 28 2006 9.5 6.0 7.8 3.2 2068 chr3L 18593919 intergenic term - chr3L 18594953 intergenic not near genes chr3L 18595987 intergenic CR45389 + chr3L_28_18590001 chr3L_18590001 RAL-395 2027 chr3L 18627773 18627829 chr3L 18627888 18627947 24 117 4.5 11.0 7.8 2.7 174 chr3L 18627773 intron MYPT-75D + chr3L 18627860 intron MYPT-75D + chr3L 18627947 intron MYPT-75D + chr3L_24_18625001 chr3L_18625001 RAL-395 2028 chr3L 18710768 18710792 chr3L 18718744 18718768 Stalker2 11 7976 7.5 4.0 5.8 1.6 8000 chr3L 18710768 intergenic not near genes chr3L 18714768 intergenic not near genes chr3L 18718768 intergenic not near genes chr3L_11_18710001 chr3L_18710001 RAL-395 2029 chr3L 18721746 18721804 chr3L 18721862 18721920 25 117 7.0 7.5 7.2 3.0 174 chr3L 18721746 intergenic CG12477 - chr3L 18721833 intergenic CG12477 - chr3L 18721920 3` UTR CG12477 - chr3L_25_18720001 chr3L_18720001 RAL-395 2030 chr3L 18736036 18736058 chr3L 18736157 18736179 13 121 6.0 12.0 9.0 1.3 143 chr3L 18736036 intergenic not near genes chr3L 18736108 intergenic not near genes chr3L 18736179 intergenic not near genes chr3L_13_18735001 chr3L_18735001 RAL-395 2031 chr3L 18772386 18772432 chr3L 18781093 18781138 roo 19 8706 10.0 7.5 8.8 1.9 8752 chr3L 18772386 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781138 intron ftz-f1 - chr3L_19_18775001 chr3L_18775001 RAL-395 2032 chr3L 18784368 18784405 chr3L 18784483 18784520 11 115 9.0 9.0 9.0 1.1 152 chr3L 18784368 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784520 intron ftz-f1 - chr3L_11_18780001 chr3L_18780001 RAL-395 2033 chr3L 18792547 18792596 chr3L 18792655 18792704 13 108 6.0 7.5 6.8 1.7 157 chr3L 18792547 intron ftz-f1 - chr3L 18792626 intron ftz-f1 - chr3L 18792704 intron ftz-f1 - chr3L_13_18790001 chr3L_18790001 RAL-395 2034 chr3L 18797308 18797334 chr3L 18797418 18797439 11 109 5.5 9.5 7.5 1.3 131 chr3L 18797308 intron ftz-f1 - chr3L 18797374 intron ftz-f1 - chr3L 18797439 intron ftz-f1 - chr3L_11_18795001 chr3L_18795001 RAL-395 2035 chr3L 18810121 18810173 chr3L 18810223 18810276 23 102 6.0 6.0 6.0 3.3 155 chr3L 18810121 intron CG14073 - chr3L 18810198 intron CG14073 - chr3L 18810276 intron CG14073 - chr3L_23_18810001 chr3L_18810001 RAL-395 2036 chr3L 18833756 18833808 chr3L 18834944 18834998 1360 34 1190 7.5 9.5 8.5 3.6 1242 chr3L 18833756 intron Indy - chr3L 18834377 intron Indy - chr3L 18834998 intron Indy - chr3L_34_18830001 chr3L_18830001 RAL-395 2037 chr3L 18836362 18836371 chr3L 18836472 18836481 6 110 10.5 6.0 8.2 0.7 119 chr3L 18836362 intron Indy - chr3L 18836422 intron Indy - chr3L 18836481 intron Indy - chr3L_6_18835001 chr3L_18835001 RAL-395 2038 chr3L 18836372 18836409 chr3L 18836468 18836518 11 108 4.5 4.0 4.2 2.1 146 chr3L 18836372 intron Indy - chr3L 18836445 intron Indy - chr3L 18836518 intron Indy - chr3L_11_18835001 chr3L_18835001 RAL-395 2039 chr3L 18839715 18839768 chr3L 18839824 18839877 18 109 6.0 9.5 7.8 2.0 162 chr3L 18839715 intron Indy - chr3L 18839796 intron Indy - chr3L 18839877 intron Indy - chr3L_18_18835001 chr3L_18835001 RAL-395 2040 chr3L 18840871 18840889 chr3L 18841037 18841056 7 167 3.0 9.0 6.0 1.0 185 chr3L 18840871 intron Indy - chr3L 18840964 intron Indy - chr3L 18841056 intron Indy - chr3L_7_18840001 chr3L_18840001 RAL-395 2041 chr3L 18843840 18843867 chr3L 18843963 18843991 13 124 15.5 3.5 9.5 1.2 151 chr3L 18843840 intron Indy - chr3L 18843916 intron Indy - chr3L 18843991 intron Indy - chr3L_13_18840001 chr3L_18840001 RAL-395 2042 chr3L 18847241 18847255 chr3L 18847357 18847371 6 116 0.5 2.0 1.2 2.7 130 chr3L 18847241 intergenic not near genes chr3L 18847306 intergenic not near genes chr3L 18847371 intergenic not near genes chr3L_6_18845001 chr3L_18845001 RAL-395 2043 chr3L 18868947 18868995 chr3L 18869044 18869102 18 106 5.5 7.5 6.5 2.4 155 chr3L 18868947 3` UTR Dysb + chr3L 18869024 3` UTR Dysb + chr3L 18869102 3` UTR Dysb + chr3L_18_18865001 chr3L_18865001 RAL-395 2044 chr3L 18896761 18896790 chr3L 18896909 18896951 18 158 4.0 9.0 6.5 2.4 190 chr3L 18896761 intron CG3902 - chr3L 18896856 intron CG3902 - chr3L 18896951 intron CG3902 - chr3L_18_18895001 chr3L_18895001 RAL-395 2045 chr3L 18913771 18913820 chr3L 18913870 18913923 35 103 11.0 9.5 10.2 3.1 152 chr3L 18913771 intron CG14077 - chr3L 18913847 exon CG14077 - chr3L 18913923 intron CG14077 - chr3L_35_18910001 chr3L_18910001 RAL-395 2046 chr3L 18924457 18924502 chr3L 18924559 18924604 13 102 7.5 1.5 4.5 2.4 147 chr3L 18924457 intron CG32204 - chr3L 18924530 intron CG32204 - chr3L 18924604 intron CG32204 - chr3L_13_18920001 chr3L_18920001 RAL-395 2047 chr3L 18929942 18929988 chr3L 18930052 18930098 27 110 7.0 10.5 8.8 2.8 156 chr3L 18929942 intron CG32204 - chr3L 18930020 intron CG32204 - chr3L 18930098 exon CG32204 - chr3L_27_18930001 chr3L_18930001 RAL-395 2048 chr3L 18933607 18933642 chr3L 18933727 18933761 10 120 10.5 7.0 8.8 1.0 154 chr3L 18933607 intron CG32204 - chr3L 18933684 intron CG32204 - chr3L 18933761 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-395 2049 chr3L 18933643 18933659 chr3L 18933719 18933778 10 114 8.0 4.5 6.2 1.4 135 chr3L 18933643 intron CG32204 - chr3L 18933710 intron CG32204 - chr3L 18933778 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-395 2050 chr3L 18941684 18941737 chr3L 18941803 18941856 26 118 5.0 14.5 9.8 2.4 172 chr3L 18941684 intron CG32204 - chr3L 18941770 intron CG32204 - chr3L 18941856 intron CG32204 - chr3L_26_18940001 chr3L_18940001 RAL-395 2051 chr3L 18957267 18957326 chr3L 18957374 18957433 28 106 5.0 12.0 8.5 2.9 166 chr3L 18957267 intergenic not near genes chr3L 18957350 intergenic not near genes chr3L 18957433 intergenic not near genes chr3L_28_18955001 chr3L_18955001 RAL-395 2052 chr3L 18969523 18969577 chr3L 18969625 18969679 32 102 6.5 7.0 6.8 4.1 156 chr3L 18969523 intergenic not near genes chr3L 18969601 intergenic not near genes chr3L 18969679 intergenic not near genes chr3L_32_18965001 chr3L_18965001 RAL-395 2053 chr3L 19008826 19008861 chr3L 19009190 19009225 jockey 15 362 8.5 7.5 8.0 1.7 399 chr3L 19008826 intron nkd - chr3L 19009026 intron nkd - chr3L 19009225 intron nkd - chr3L_15_19005001 chr3L_19005001 RAL-395 2054 chr3L 19015154 19015213 chr3L 19015264 19015319 20 109 0.0 9.5 4.8 3.4 165 chr3L 19015154 intron nkd - chr3L 19015236 intron nkd - chr3L 19015319 intron nkd - chr3L_20_19015001 chr3L_19015001 RAL-395 2055 chr3L 19056824 19056831 chr3L 19056969 19056977 5 145 10.0 2.0 6.0 0.7 153 chr3L 19056824 intergenic not near genes chr3L 19056900 intergenic not near genes chr3L 19056977 intergenic not near genes chr3L_5_19055001 chr3L_19055001 RAL-395 2056 chr3L 19110612 19110649 chr3L 19110963 19111001 14 352 5.0 8.5 6.8 1.8 389 chr3L 19110612 intron CG14082 - chr3L 19110806 intron CG14082 - chr3L 19111001 intron CG14082 - chr3L_14_19110001 chr3L_19110001 RAL-395 2057 chr3L 19115610 19115672 chr3L 19115816 19115835 BS 29 202 7.0 7.0 7.0 3.6 225 chr3L 19115610 intron CG14082 - chr3L 19115722 intron CG14082 - chr3L 19115835 intron CG14082 - chr3L_29_19115001 chr3L_19115001 RAL-395 2058 chr3L 19117020 19117050 chr3L 19124493 19124523 mdg1 16 7472 16.0 10.0 13.0 1.1 7503 chr3L 19117020 intron CG14082 - chr3L 19120772 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_16_19120001 chr3L_19120001 RAL-395 2059 chr3L 19117051 19117075 chr3L 19124492 19124548 mdg1 21 7470 8.5 9.5 9.0 2.1 7497 chr3L 19117051 intron CG14082 - chr3L 19120800 intron CG14082 - chr3L 19124548 intron CG14082 - chr3L_21_19120001 chr3L_19120001 RAL-395 2060 chr3L 19135068 19135126 chr3L 19135246 19135276 25 176 9.5 13.5 11.5 2.0 208 chr3L 19135068 intron CG14082 - chr3L 19135172 intron CG14082 - chr3L 19135276 intron CG14082 - chr3L_25_19135001 chr3L_19135001 RAL-395 2061 chr3L 19138125 19138155 chr3L 19138233 19138275 11 117 0.0 5.5 2.8 2.9 150 chr3L 19138125 intron CG14082 - chr3L 19138200 intron CG14082 - chr3L 19138275 intron CG14082 - chr3L_11_19135001 chr3L_19135001 RAL-395 2062 chr3L 19182363 19182418 chr3L 19182470 19182525 32 107 6.0 5.5 5.8 4.7 162 chr3L 19182363 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182525 intron fz2 - chr3L_32_19180001 chr3L_19180001 RAL-395 2063 chr3L 19208034 19208091 chr3L 19209434 19209492 Doc 21 1400 6.0 8.5 7.2 2.6 1458 chr3L 19208034 intron fz2 - chr3L 19208763 intron fz2 - chr3L 19209492 intron fz2 - chr3L_21_19205001 chr3L_19205001 RAL-395 2064 chr3L 19210109 19210141 chr3L 19210231 19210263 22 122 0.0 17.5 8.8 2.2 154 chr3L 19210109 intron fz2 - chr3L 19210186 intron fz2 - chr3L 19210263 intron fz2 - chr3L_22_19210001 chr3L_19210001 RAL-395 2065 chr3L 19220633 19220637 chr3L 22908066 22908067 14 3687431 45.5 37.5 41.5 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_14_21060001 chr3L_21060001 RAL-395 2066 chr3L 19262186 19262244 chr3L 19262294 19262352 23 107 3.5 10.0 6.8 2.9 166 chr3L 19262186 3` UTR Bet1 + chr3L 19262269 3` UTR,3` UTR Bet1 +,Max - chr3L 19262352 3` UTR,3` UTR Bet1 +,Max - chr3L_23_19260001 chr3L_19260001 RAL-395 2067 chr3L 19269791 19269848 chr3L 19270019 19270077 30 228 2.5 9.0 5.8 4.4 286 chr3L 19269791 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270077 intron,exon CG14085 +,CG14088 - chr3L_30_19265001 chr3L_19265001 RAL-395 2068 chr3L 19342736 19342772 chr3L 19342853 19342889 10 117 5.0 6.5 5.8 1.5 153 chr3L 19342736 3` UTR CG32206 - chr3L 19342812 3` UTR CG32206 - chr3L 19342889 3` UTR CG32206 - chr3L_10_19340001 chr3L_19340001 RAL-395 2069 chr3L 19346845 19346882 chr3L 19346955 19346986 4 105 0.5 14.5 7.5 0.5 141 chr3L 19346845 intron CG32206 - chr3L 19346916 intron CG32206 - chr3L 19346986 intron CG32206 - chr3L_4_19345001 chr3L_19345001 RAL-395 2070 chr3L 19398915 19398930 chr3L 19403658 19403673 F-element 8 4743 9.5 7.0 8.2 0.9 4758 chr3L 19398915 intron CG32206 - chr3L 19401294 intron CG32206 - chr3L 19403673 intron CG32206 - chr3L_8_19400001 chr3L_19400001 RAL-395 2071 chr3L 19404412 19404466 chr3L 19404523 19404531 22 108 9.0 7.0 8.0 2.4 119 chr3L 19404412 intron CG32206 - chr3L 19404472 intron CG32206 - chr3L 19404531 intron CG32206 - chr3L_22_19400001 chr3L_19400001 RAL-395 2072 chr3L 19404951 19405005 chr3L 19405054 19405104 39 103 12.5 13.0 12.8 2.8 153 chr3L 19404951 intron CG32206 - chr3L 19405028 intron CG32206 - chr3L 19405104 intron CG32206 - chr3L_39_19405001 chr3L_19405001 RAL-395 2073 chr3L 19417779 19417825 chr3L 19417885 19417931 15 106 7.5 9.0 8.2 1.6 152 chr3L 19417779 intergenic not near genes chr3L 19417855 intergenic not near genes chr3L 19417931 intergenic not near genes chr3L_15_19415001 chr3L_19415001 RAL-395 2074 chr3L 19426732 19426777 chr3L 19426836 19426881 21 103 12.5 18.0 15.2 1.3 149 chr3L 19426732 intergenic not near genes chr3L 19426806 intergenic not near genes chr3L 19426881 intergenic not near genes chr3L_21_19425001 chr3L_19425001 RAL-395 2075 chr3L 19439149 19439198 chr3L 19439254 19439301 22 105 8.0 8.5 8.2 2.4 152 chr3L 19439149 intergenic not near genes chr3L 19439225 intergenic not near genes chr3L 19439301 intergenic not near genes chr3L_22_19435001 chr3L_19435001 RAL-395 2076 chr3L 19527904 19527951 chr3L 19528006 19528056 24 104 9.0 7.0 8.0 2.7 152 chr3L 19527904 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528056 intergenic not near genes chr3L_24_19525001 chr3L_19525001 RAL-395 2077 chr3L 19544213 19544258 chr3L 19544315 19544360 18 102 6.5 5.5 6.0 2.6 147 chr3L 19544213 intergenic CG9279 -,l(3)76BDr - chr3L 19544286 intergenic l(3)76BDr -,CG9279 - chr3L 19544360 3` UTR l(3)76BDr - chr3L_18_19540001 chr3L_19540001 RAL-395 2078 chr3L 19820272 19820306 chr3L 19827847 19827881 412 23 7575 9.5 5.0 7.2 2.8 7609 chr3L 19820272 intron Deaf1 + chr3L 19824076 intron Deaf1 + chr3L 19827881 intron Deaf1 + chr3L_23_19820001 chr3L_19820001 RAL-395 2079 chr3L 19848482 19848533 chr3L 19857698 19857750 roo 20 9217 6.5 7.0 6.8 2.6 9268 chr3L 19848482 intron Papss + chr3L 19853116 intron Papss + chr3L 19857750 intron Papss + chr3L_20_19850001 chr3L_19850001 RAL-395 2080 chr3L 19861795 19861853 chr3L 19863609 19863667 S-element 25 1814 6.5 3.5 5.0 4.2 1872 chr3L 19861795 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863667 intergenic not near genes chr3L_25_19860001 chr3L_19860001 RAL-395 2081 chr3L 19933510 19933561 chr3L 19934358 19934409 18 848 5.0 7.5 6.2 2.5 899 chr3L 19933510 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934409 intergenic CR45678 + chr3L_18_19930001 chr3L_19930001 RAL-395 2082 chr3L 19962923 19962977 chr3L 19963026 19963081 21 102 2.0 6.5 4.2 4.0 158 chr3L 19962923 intron Ac76E + chr3L 19963002 intron Ac76E + chr3L 19963081 intron Ac76E + chr3L_21_19960001 chr3L_19960001 RAL-395 2083 chr3L 19981184 19981236 chr3L 19981289 19981342 16 106 8.5 6.0 7.2 2.0 158 chr3L 19981184 intergenic CG17732 + chr3L 19981263 intergenic CG17732 + chr3L 19981342 intergenic CG17732 + chr3L_16_19980001 chr3L_19980001 RAL-395 2084 chr3L 20076985 20077035 chr3L 20077112 20077162 39 126 8.5 9.0 8.8 4.0 177 chr3L 20076985 intron sNPF-R - chr3L 20077074 intron sNPF-R - chr3L 20077162 intron sNPF-R - chr3L_39_20075001 chr3L_20075001 RAL-395 2085 chr3L 20086767 20086803 chr3L 20086871 20086907 12 104 7.5 0.5 4.0 2.4 140 chr3L 20086767 intron sNPF-R - chr3L 20086837 intron sNPF-R - chr3L 20086907 intron sNPF-R - chr3L_12_20085001 chr3L_20085001 RAL-395 2086 chr3L 20113634 20113688 chr3L 20122917 20122970 roo 21 9283 7.0 7.5 7.2 2.6 9336 chr3L 20113634 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122970 intergenic not near genes chr3L_21_20115001 chr3L_20115001 RAL-395 2087 chr3L 20127873 20127928 chr3L 20127975 20128030 31 100 8.0 8.0 8.0 3.4 157 chr3L 20127873 intergenic CG7365 - chr3L 20127952 intergenic not near genes chr3L 20128030 intergenic not near genes chr3L_31_20125001 chr3L_20125001 RAL-395 2088 chr3L 20187439 20187479 chr3L 20187544 20187584 16 105 34.5 38.0 36.2 0.4 145 chr3L 20187439 intron CG42674 - chr3L 20187512 intron CG42674 - chr3L 20187584 intron CG42674 - chr3L_16_20185001 chr3L_20185001 RAL-395 2089 chr3L 20257306 20257361 chr3L 20258452 20258507 pogo 28 1146 4.0 7.5 5.8 4.1 1201 chr3L 20257306 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258507 intron rdgC + chr3L_28_20255001 chr3L_20255001 RAL-395 2090 chr3L 20386912 20386972 chr3L 20387040 20387100 34 128 7.0 6.5 6.8 4.4 188 chr3L 20386912 intron fbl + chr3L 20387006 intron fbl + chr3L 20387100 intron fbl + chr3L_34_20385001 chr3L_20385001 RAL-395 2091 chr3L 20402171 20402223 chr3L 20402278 20402330 12 107 6.5 4.5 5.5 1.8 159 chr3L 20402171 intergenic not near genes chr3L 20402250 intergenic not near genes chr3L 20402330 intergenic not near genes chr3L_12_20400001 chr3L_20400001 RAL-395 2092 chr3L 20403549 20403603 chr3L 20403670 20403724 27 121 9.0 10.0 9.5 2.6 175 chr3L 20403549 intergenic not near genes chr3L 20403636 intergenic not near genes chr3L 20403724 intergenic not near genes chr3L_27_20400001 chr3L_20400001 RAL-395 2093 chr3L 20447674 20447682 chr3L 20447779 20447787 6 105 16.5 3.0 9.8 0.6 113 chr3L 20447674 intron CG5910 + chr3L 20447730 intron CG5910 + chr3L 20447787 intron CG5910 + chr3L_6_20445001 chr3L_20445001 RAL-395 2094 chr3L 20476732 20476778 chr3L 20484357 20484403 springer 21 7625 6.0 6.0 6.0 3.0 7671 chr3L 20476732 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484403 3` UTR ZnT77C - chr3L_21_20480001 chr3L_20480001 RAL-395 2095 chr3L 20590043 20590096 chr3L 20590604 20590661 412 32 564 9.5 7.5 8.5 3.4 618 chr3L 20590043 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590661 intergenic not near genes chr3L_32_20590001 chr3L_20590001 RAL-395 2096 chr3L 20849246 20849296 chr3L 20849351 20849401 27 104 12.0 10.0 11.0 2.2 155 chr3L 20849246 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849401 intron CG32432 - chr3L_27_20845001 chr3L_20845001 RAL-395 2097 chr3L 20858048 20858105 chr3L 20858173 20858230 27 125 3.5 5.0 4.2 5.2 182 chr3L 20858048 intron CG32432 - chr3L 20858139 intron CG32432 - chr3L 20858230 intron CG32432 - chr3L_27_20855001 chr3L_20855001 RAL-395 2098 chr3L 20882376 20882427 chr3L 20883248 20883299 23 872 14.0 13.5 13.8 1.6 923 chr3L 20882376 intron CG32432 - chr3L 20882838 intron CG32432 - chr3L 20883299 intron CG32432 - chr3L_23_20880001 chr3L_20880001 RAL-395 2099 chr3L 20886757 20886810 chr3L 20886904 20886951 11 143 8.5 5.0 6.8 1.4 194 chr3L 20886757 intergenic CR44686 - chr3L 20886854 intergenic CR44686 - chr3L 20886951 intergenic CR44686 - chr3L_11_20885001 chr3L_20885001 RAL-395 2100 chr3L 20913721 20913772 chr3L 20913829 20913880 31 106 7.5 9.0 8.2 3.4 159 chr3L 20913721 intergenic CR43930 - chr3L 20913800 intergenic CR43930 - chr3L 20913880 intergenic CR43930 - chr3L_31_20910001 chr3L_20910001 RAL-395 2101 chr3L 20942553 20942602 chr3L 20942651 20942705 25 99 14.0 10.5 12.2 1.9 152 chr3L 20942553 intron fng - chr3L 20942629 intron fng - chr3L 20942705 intron fng - chr3L_25_20940001 chr3L_20940001 RAL-395 2102 chr3L 21010626 21010679 chr3L 21010733 21010786 22 107 2.5 6.5 4.5 4.0 160 chr3L 21010626 intron skd - chr3L 21010706 intron skd - chr3L 21010786 intron skd - chr3L_22_21010001 chr3L_21010001 RAL-395 2103 chr3L 21014889 21014945 chr3L 21023396 21023452 Tirant 30 8506 9.0 10.0 9.5 2.9 8563 chr3L 21014889 intron skd - chr3L 21019170 intron skd - chr3L 21023452 intron skd - chr3L_30_21015001 chr3L_21015001 RAL-395 2104 chr3L 21035428 21035483 chr3L 21035531 21035586 30 103 10.0 1.0 5.5 4.6 158 chr3L 21035428 intron siz + chr3L 21035507 intron siz + chr3L 21035586 intron siz + chr3L_30_21035001 chr3L_21035001 RAL-395 2105 chr3L 21057113 21057157 chr3L 21057355 21057399 28 242 10.0 4.5 7.2 3.4 286 chr3L 21057113 intron siz + chr3L 21057256 intron siz + chr3L 21057399 intron siz + chr3L_28_21055001 chr3L_21055001 RAL-395 2106 chr3L 21067926 21067980 chr3L 21068032 21068081 32 104 7.5 6.5 7.0 4.0 155 chr3L 21067926 intron siz + chr3L 21068004 intron siz + chr3L 21068081 intron siz + chr3L_32_21065001 chr3L_21065001 RAL-395 2107 chr3L 21082182 21082239 chr3L 21082286 21082343 20 104 5.0 6.0 5.5 3.1 161 chr3L 21082182 intron ko - chr3L 21082262 intron ko - chr3L 21082343 intron ko - chr3L_20_21080001 chr3L_21080001 RAL-395 2108 chr3L 21085556 21085612 chr3L 21085970 21086025 21 414 2.5 6.5 4.5 3.8 469 chr3L 21085556 intron ko - chr3L 21085790 intron ko - chr3L 21086025 intron ko - chr3L_21_21085001 chr3L_21085001 RAL-395 2109 chr3L 21125818 21125877 chr3L 21125927 21125986 40 107 7.0 11.5 9.2 3.9 168 chr3L 21125818 intron ko - chr3L 21125902 intron ko - chr3L 21125986 intron ko - chr3L_40_21125001 chr3L_21125001 RAL-395 2110 chr3L 21151844 21151895 chr3L 21156949 21157005 flea 19 5110 9.0 8.5 8.8 1.9 5161 chr3L 21151844 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21157005 intron Ac78C - chr3L_19_21150001 chr3L_21150001 RAL-395 2111 chr3L 21163213 21163248 chr3L 21163321 21163357 11 108 8.0 6.0 7.0 1.4 144 chr3L 21163213 intron Ac78C - chr3L 21163285 intron Ac78C - chr3L 21163357 intron Ac78C - chr3L_11_21160001 chr3L_21160001 RAL-395 2112 chr3L 21243721 21243738 chr3L 21251310 21251327 412 12 7587 12.0 13.5 12.8 0.9 7606 chr3L 21243721 intron Eip78C + chr3L 21247524 intron Eip78C + chr3L 21251327 intron Eip78C + chr3L_12_21245001 chr3L_21245001 RAL-395 2113 chr3L 21259570 21259627 chr3L 21259672 21259729 32 101 8.0 11.0 9.5 3.0 159 chr3L 21259570 intron Eip78C + chr3L 21259650 intron Eip78C + chr3L 21259729 intron Eip78C + chr3L_32_21255001 chr3L_21255001 RAL-395 2114 chr3L 21266308 21266361 chr3L 21266414 21266467 26 106 10.5 8.0 9.2 2.5 159 chr3L 21266308 3` UTR Eip78C + chr3L 21266388 3` UTR Eip78C + chr3L 21266467 3` UTR Eip78C + chr3L_26_21265001 chr3L_21265001 RAL-395 2115 chr3L 21294814 21294868 chr3L 21294931 21294985 21 117 4.5 6.5 5.5 3.2 171 chr3L 21294814 5` UTR Cpr78Cb + chr3L 21294900 5` UTR Cpr78Cb + chr3L 21294985 5` UTR Cpr78Cb + chr3L_21_21290001 chr3L_21290001 RAL-395 2116 chr3L 21303686 21303739 chr3L 21303799 21303852 21 112 8.0 9.0 8.5 2.2 166 chr3L 21303686 intron CG11309 - chr3L 21303769 intron CG11309 - chr3L 21303852 intron CG11309 - chr3L_21_21300001 chr3L_21300001 RAL-395 2117 chr3L 21306122 21306176 chr3L 21315307 21315361 roo 21 9185 7.0 3.5 5.2 3.4 9239 chr3L 21306122 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315361 3` UTR Pc - chr3L_21_21310001 chr3L_21310001 RAL-395 2118 chr3L 21361699 21361752 chr3L 21362679 21362732 G2 17 980 10.0 5.0 7.5 2.0 1033 chr3L 21361699 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362732 intergenic not near genes chr3L_17_21360001 chr3L_21360001 RAL-395 2119 chr3L 21372701 21372747 chr3L 21379235 21379281 McClintock 14 6534 5.5 6.5 6.0 2.0 6580 chr3L 21372701 intergenic not near genes chr3L 21375991 intergenic not near genes chr3L 21379281 intergenic not near genes chr3L_14_21375001 chr3L_21375001 RAL-395 2120 chr3L 21399429 21399448 chr3L 21399538 21399557 10 108 17.0 12.5 14.8 0.6 128 chr3L 21399429 intron rgn + chr3L 21399493 intron rgn + chr3L 21399557 intron rgn + chr3L_10_21395001 chr3L_21395001 RAL-395 2121 chr3L 21406974 21407019 chr3L 21407079 21407114 18 104 10.0 8.5 9.2 1.8 140 chr3L 21406974 intron rgn + chr3L 21407044 intron rgn + chr3L 21407114 intron rgn + chr3L_18_21405001 chr3L_21405001 RAL-395 2122 chr3L 21414512 21414545 chr3L 21414610 21414647 10 102 5.0 11.0 8.0 1.1 135 chr3L 21414512 intron rgn + chr3L 21414580 intron rgn + chr3L 21414647 intron rgn + chr3L_10_21410001 chr3L_21410001 RAL-395 2123 chr3L 4341332 4341333 chr3L 21448026 21448026 11 17106693 39.5 42.5 41.0 0.3 17106694 chr3L 4341332 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_11_12890001 chr3L_12890001 RAL-395 2124 chr3L 7201270 7201270 chr3L 21448026 21448026 6 14246756 29.0 42.5 35.8 0.2 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_6_14320001 chr3L_14320001 RAL-395 2125 chr3L 4341330 4341333 chr3L 21448027 21448027 14 17106694 39.5 42.0 40.8 0.3 17106697 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_14_12890001 chr3L_12890001 RAL-395 2126 chr3L 7201270 7201270 chr3L 21448027 21448027 4 14246757 29.0 42.0 35.5 0.1 14246757 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448027 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 RAL-395 2127 chr3L 21498827 21498842 chr3L 21500489 21500504 1360 11 1662 14.5 12.5 13.5 0.8 1677 chr3L 21498827 5` UTR,intron CR43933 +,Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500504 intron Glg1 - chr3L_11_21495001 chr3L_21495001 RAL-395 2128 chr3L 21498845 21498859 chr3L 21500476 21500521 1360 9 1658 7.0 8.0 7.5 1.1 1676 chr3L 21498845 intron Glg1 - chr3L 21499683 intron Glg1 - chr3L 21500521 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-395 2129 chr3L 21630589 21630593 chr3L 21630720 21630725 4 132 3.5 6.5 5.0 0.7 136 chr3L 21630589 intron MED1 - chr3L 21630657 intron MED1 - chr3L 21630725 intron MED1 - chr3L_4_21630001 chr3L_21630001 RAL-395 2130 chr3L 21630594 21630644 chr3L 21630719 21630734 28 130 3.5 6.5 5.0 4.7 140 chr3L 21630594 intron MED1 - chr3L 21630664 intron MED1 - chr3L 21630734 intron MED1 - chr3L_28_21630001 chr3L_21630001 RAL-395 2131 chr3L 21656972 21657025 chr3L 21657091 21657144 26 119 7.0 7.5 7.2 3.2 172 chr3L 21656972 intron CG43980 + chr3L 21657058 intron CG43980 + chr3L 21657144 intron CG43980 + chr3L_26_21655001 chr3L_21655001 RAL-395 2132 chr3L 21749297 21749331 chr3L 21754478 21754517 Doc 12 5184 7.0 6.0 6.5 1.6 5220 chr3L 21749297 intron Syn1 - chr3L 21751907 intron Syn1 - chr3L 21754517 intron Syn1 - chr3L_12_21750001 chr3L_21750001 RAL-395 2133 chr3L 21766898 21766952 chr3L 21767205 21767259 40 306 10.0 6.0 8.0 4.4 361 chr3L 21766898 intron Syn1 - chr3L 21767078 intron Syn1 - chr3L 21767259 intron Syn1 - chr3L_40_21765001 chr3L_21765001 RAL-395 2134 chr3L 21770020 21770040 chr3L 21770133 21770152 10 113 13.5 9.0 11.2 0.8 132 chr3L 21770020 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770086 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770152 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_10_21770001 chr3L_21770001 RAL-395 2135 chr3L 21788578 21788636 chr3L 21788688 21788747 34 111 8.5 11.0 9.8 3.1 169 chr3L 21788578 intergenic not near genes chr3L 21788662 intergenic not near genes chr3L 21788747 intergenic not near genes chr3L_34_21785001 chr3L_21785001 RAL-395 2136 chr3L 21809948 21809969 chr3L 21810068 21810089 13 121 19.0 28.0 23.5 0.5 141 chr3L 21809948 intron eg + chr3L 21810018 intron eg + chr3L 21810089 intron eg + chr3L_13_21810001 chr3L_21810001 RAL-395 2137 chr3L 21972500 21972551 chr3L 21972605 21972656 30 104 9.5 7.0 8.2 3.3 156 chr3L 21972500 intron CG7470 + chr3L 21972578 intron CG7470 + chr3L 21972656 intron CG7470 + chr3L_30_21970001 chr3L_21970001 RAL-395 2138 chr3L 22099661 22099703 chr3L 22105867 22105915 3S18 7 6209 0.0 5.0 2.5 2.0 6254 chr3L 22099661 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105915 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-395 2139 chr3L 22107650 22107703 chr3L 22107858 22107910 19 207 5.5 3.5 4.5 3.5 260 chr3L 22107650 intergenic not near genes chr3L 22107780 intergenic not near genes chr3L 22107910 intergenic not near genes chr3L_19_22105001 chr3L_22105001 RAL-395 2140 chr3L 22130473 22130522 chr3L 22130645 22130694 17 172 2.5 9.5 6.0 2.4 221 chr3L 22130473 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130694 intergenic not near genes chr3L_17_22130001 chr3L_22130001 RAL-395 2141 chr3L 22137638 22137660 chr3L 22137750 22137773 14 113 11.0 11.0 11.0 1.2 135 chr3L 22137638 intron olf413 + chr3L 22137706 intron olf413 + chr3L 22137773 intron olf413 + chr3L_14_22135001 chr3L_22135001 RAL-395 2142 chr3L 22137661 22137689 chr3L 22137744 22137800 24 111 7.0 8.5 7.8 2.7 139 chr3L 22137661 intron olf413 + chr3L 22137730 intron olf413 + chr3L 22137800 intron olf413 + chr3L_24_22135001 chr3L_22135001 RAL-395 2143 chr3L 22152145 22152201 chr3L 22152254 22152310 14 108 7.0 6.5 6.8 1.8 165 chr3L 22152145 intron olf413 + chr3L 22152228 intron olf413 + chr3L 22152310 intron olf413 + chr3L_14_22150001 chr3L_22150001 RAL-395 2144 chr3L 22227632 22227682 chr3L 22227836 22227886 32 204 9.0 8.5 8.8 3.3 254 chr3L 22227632 intron olf413 + chr3L 22227759 intron olf413 + chr3L 22227886 intron olf413 + chr3L_32_22225001 chr3L_22225001 RAL-395 2145 chr3L 22351113 22351169 chr3L 22351235 22351291 31 121 9.5 14.5 12.0 2.4 178 chr3L 22351113 intron Ten-m - chr3L 22351202 intron Ten-m - chr3L 22351291 intron Ten-m - chr3L_31_22350001 chr3L_22350001 RAL-395 2146 chr3L 22361914 22361971 chr3L 22362017 22362074 32 102 7.5 9.0 8.2 3.5 160 chr3L 22361914 intron Ten-m - chr3L 22361994 intron Ten-m - chr3L 22362074 intron Ten-m - chr3L_32_22360001 chr3L_22360001 RAL-395 2147 chr3L 22447173 22447229 chr3L 22447290 22447346 29 116 12.5 9.5 11.0 2.4 173 chr3L 22447173 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447346 intergenic not near genes chr3L_29_22445001 chr3L_22445001 RAL-395 2148 chr3L 22461538 22461555 chr3L 22461658 22461675 4 120 0.5 3.0 1.8 1.4 137 chr3L 22461538 intergenic laza - chr3L 22461606 intergenic laza - chr3L 22461675 intergenic not near genes chr3L_4_22460001 chr3L_22460001 RAL-395 2149 chr3L 22477026 22477084 chr3L 22477143 22477199 27 114 0.0 6.5 3.2 6.4 173 chr3L 22477026 intergenic not near genes chr3L 22477112 intergenic not near genes chr3L 22477199 intergenic not near genes chr3L_27_22475001 chr3L_22475001 RAL-395 2150 chr3L 22522672 22522729 chr3L 22522775 22522832 25 100 3.5 8.0 5.8 3.7 160 chr3L 22522672 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522832 intergenic not near genes chr3L_25_22520001 chr3L_22520001 RAL-395 2151 chr3L 22555745 22555750 chr3L 22563241 22563246 blood 5 7496 24.0 14.5 19.2 0.2 7501 chr3L 22555745 intergenic not near genes chr3L 22559496 intergenic not near genes chr3L 22563246 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-395 2152 chr3L 22555751 22555797 chr3L 22563239 22563293 blood 33 7495 9.0 13.5 11.2 2.7 7542 chr3L 22555751 intergenic not near genes chr3L 22559522 intergenic not near genes chr3L 22563293 intergenic not near genes chr3L_33_22555001 chr3L_22555001 RAL-395 2153 chr3L 22577600 22577645 chr3L 22582414 22582459 Doc 30 4813 17.0 13.0 15.0 1.9 4859 chr3L 22577600 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582459 3` UTR CG14459 - chr3L_30_22580001 chr3L_22580001 RAL-395 2154 chr3L 22603888 22603947 chr3L 22603996 22604055 36 108 5.0 5.0 5.0 6.0 167 chr3L 22603888 intron CG14459 - chr3L 22603972 intron CG14459 - chr3L 22604055 intron CG14459 - chr3L_36_22600001 chr3L_22600001 RAL-395 2155 chr3L 22617167 22617221 chr3L 22624645 22624699 blood 29 7476 9.0 10.5 9.8 2.7 7532 chr3L 22617167 intron CG14459 - chr3L 22620933 intron CG14459 - chr3L 22624699 intron CG14459 - chr3L_29_22620001 chr3L_22620001 RAL-395 2156 chr3L 22673758 22673816 chr3L 22673894 22673954 27 133 6.0 7.0 6.5 3.6 196 chr3L 22673758 intron CG14457 + chr3L 22673856 intron CG14457 + chr3L 22673954 intron CG14457 + chr3L_27_22670001 chr3L_22670001 RAL-395 2157 chr3L 22761362 22761408 chr3L 22766822 22766868 Ivk 34 5460 14.0 12.0 13.0 2.4 5506 chr3L 22761362 intron SPoCk + chr3L 22764115 intron SPoCk + chr3L 22766868 intron SPoCk + chr3L_34_22760001 chr3L_22760001 RAL-395 2158 chr3L 22786064 22786121 chr3L 22788475 22788532 68 2411 89.5 93.0 91.2 0.7 2468 chr3L 22786064 3` UTR SPoCk + chr3L 22787298 3` UTR SPoCk + chr3L 22788532 exon CG14448 + chr3L_68_22785001 chr3L_22785001 RAL-395 2159 chr3L 22844325 22844374 chr3L 22844580 22844630 22 256 5.5 6.5 6.0 3.1 305 chr3L 22844325 intergenic not near genes chr3L 22844478 intergenic not near genes chr3L 22844630 intergenic not near genes chr3L_22_22840001 chr3L_22840001 RAL-395 2160 chr3L 22849433 22849441 chr3L 22849544 22849552 8 111 9.0 16.5 12.8 0.6 119 chr3L 22849433 intergenic not near genes chr3L 22849492 intergenic not near genes chr3L 22849552 intergenic not near genes chr3L_8_22845001 chr3L_22845001 RAL-395 2161 chr3L 22853439 22853720 chr3L 22853552 22853832 65 112 7.0 10.5 8.8 6.6 393 chr3L 22853439 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853832 5` UTR CR43426 + chr3L_65_22850001 chr3L_22850001 RAL-395 2162 chr3L 22857613 22857629 chr3L 22857714 22857734 9 104 9.5 23.0 16.2 0.5 121 chr3L 22857613 intergenic not near genes chr3L 22857674 intergenic not near genes chr3L 22857734 intergenic not near genes chr3L_9_22855001 chr3L_22855001 RAL-395 2163 chr3L 22865966 22866007 chr3L 22867125 22867166 Doc 17 1159 12.0 11.0 11.5 1.4 1200 chr3L 22865966 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867166 intron CG33170 + chr3L_17_22865001 chr3L_22865001 RAL-395 2164 chr3L 22894240 22894257 chr3L 22894352 22894368 9 112 15.0 19.0 17.0 0.5 128 chr3L 22894240 intergenic slif + chr3L 22894304 intergenic slif + chr3L 22894368 intergenic not near genes chr3L_9_22890001 chr3L_22890001 RAL-395 2165 chr3L 9102747 9102805 chr3L 22908066 22908066 23 13805291 79.5 37.5 58.5 0.4 13805319 chr3L 9102747 exon bol - chr3L 16005406 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_23_16005001 chr3L_16005001 RAL-395 2166 chr3L 9102756 9102806 chr3L 22908067 22908067 23 13805282 79.0 38.0 58.5 0.4 13805311 chr3L 9102756 exon bol - chr3L 16005412 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_23_16005001 chr3L_16005001 RAL-395 2167 chr3L 22912739 22912755 chr3L 22912846 22912861 7 107 21.0 8.5 14.8 0.4 122 chr3L 22912739 intron CG12768 + chr3L 22912800 intron CG12768 + chr3L 22912861 intron CG12768 + chr3L_7_22910001 chr3L_22910001 RAL-395 2168 chr3L 22912757 22912795 chr3L 22912845 22912902 29 105 7.5 7.5 7.5 3.4 145 chr3L 22912757 intron CG12768 + chr3L 22912830 intron CG12768 + chr3L 22912902 intron CG12768 + chr3L_29_22910001 chr3L_22910001 RAL-395 2169 chr3L 22915147 22915200 chr3L 22915280 22915331 30 133 8.5 9.0 8.8 3.1 184 chr3L 22915147 intron CG12768 + chr3L 22915239 intron CG12768 + chr3L 22915331 intron CG12768 + chr3L_30_22915001 chr3L_22915001 RAL-395 2170 chr3L 22920908 22920958 chr3L 22921022 22921072 33 113 10.5 5.5 8.0 3.7 164 chr3L 22920908 intron CG12768 + chr3L 22920990 intron CG12768 + chr3L 22921072 intron CG12768 + chr3L_33_22920001 chr3L_22920001 RAL-395 2171 chr3L 22924922 22924976 chr3L 22925024 22925080 22 102 7.0 6.5 6.8 2.8 158 chr3L 22924922 intergenic not near genes chr3L 22925001 intergenic not near genes chr3L 22925080 intergenic not near genes chr3L_22_22925001 chr3L_22925001 RAL-395 2172 chr3L 22955366 22955414 chr3L 22956682 22956733 INE-1 19 1318 6.0 13.0 9.5 1.8 1367 chr3L 22955366 intergenic CG32461 - chr3L 22956050 intergenic not near genes chr3L 22956733 intergenic not near genes chr3L_19_22955001 chr3L_22955001 RAL-395 2173 chr3L 22974343 22974392 chr3L 22974447 22974497 29 105 8.5 7.5 8.0 3.2 154 chr3L 22974343 intergenic not near genes chr3L 22974420 intergenic not near genes chr3L 22974497 intergenic not near genes chr3L_29_22970001 chr3L_22970001 RAL-395 2174 chr3L 22984021 22984058 chr3L 22984133 22984170 15 112 15.0 5.5 10.2 1.3 149 chr3L 22984021 intergenic not near genes chr3L 22984096 intergenic not near genes chr3L 22984170 intergenic not near genes chr3L_15_22980001 chr3L_22980001 RAL-395 2175 chr3L 22989834 22989891 chr3L 22996834 22996890 297 25 6999 6.0 3.5 4.8 4.3 7056 chr3L 22989834 intergenic not near genes chr3L 22993362 intergenic not near genes chr3L 22996890 intergenic not near genes chr3L_25_22990001 chr3L_22990001 RAL-395 2176 chr3L 23009018 23009072 chr3L 23009183 23009237 26 165 12.0 9.5 10.8 2.2 219 chr3L 23009018 intron nrm + chr3L 23009128 intron nrm + chr3L 23009237 intron nrm + chr3L_26_23005001 chr3L_23005001 RAL-395 2177 chr3L 23035855 23035899 chr3L 23036772 23036816 INE-1 16 917 5.5 7.0 6.2 2.2 961 chr3L 23035855 intron nrm + chr3L 23036336 intron nrm + chr3L 23036816 intron nrm + chr3L_16_23035001 chr3L_23035001 RAL-395 2178 chr3L 23213260 23213313 chr3L 23213653 23213706 22 393 5.0 8.5 6.8 2.8 446 chr3L 23213260 intron nAChRalpha4 + chr3L 23213483 intron nAChRalpha4 + chr3L 23213706 intron nAChRalpha4 + chr3L_22_23210001 chr3L_23210001 RAL-395 2179 chr3L 23271717 23271736 chr3L 23276855 23276876 invader2 8 5140 0.0 8.5 4.2 1.5 5159 chr3L 23271717 intron nAChRalpha4 + chr3L 23274296 intron nAChRalpha4 + chr3L 23276876 intron nAChRalpha4 + chr3L_8_23270001 chr3L_23270001 RAL-395 2180 chr3L 23665510 23665529 chr3L 23665625 23665644 gypsy8 14 116 42.5 40.0 41.2 0.3 134 chr3L 23665510 intron AGO3 + chr3L 23665577 intron AGO3 + chr3L 23665644 intron AGO3 + chr3L_14_23665001 chr3L_23665001 RAL-395 2181 chr3L 23848814 23848843 chr3L 23849663 23849693 R1A1-element 15 848 14.0 8.5 11.2 1.2 879 chr3L 23848814 intron CG40470 - chr3L 23849254 intron CG40470 - chr3L 23849693 intron CG40470 - chr3L_15_23845001 chr3L_23845001 RAL-395 2182 chr3L 23854271 23854311 chr3L 23854395 23854435 24 123 5.5 7.5 6.5 3.2 164 chr3L 23854271 intron CG40470 - chr3L 23854353 intron CG40470 - chr3L 23854435 intron CG40470 - chr3L_24_23850001 chr3L_23850001 RAL-395 2183 chr3L 23868801 23868817 chr3L 23869127 23869142 9 326 33.0 36.0 34.5 0.3 341 chr3L 23868801 intron CG40470 - chr3L 23868972 intron CG40470 - chr3L 23869142 intron CG40470 - chr3L_9_23865001 chr3L_23865001 RAL-395 2184 chr3L 23909127 23909182 chr3L 23912251 23912306 G3 23 3124 48.5 55.0 51.8 0.4 3179 chr3L 23909127 intron,5` UTR CG40470 -,CR43942 + chr3L 23910716 intron CG40470 - chr3L 23912306 exon CG40470 - chr3L_23_23910001 chr3L_23910001 RAL-395 2185 chr3L 24012386 24012435 chr3L 24020752 24020800 roo 23 8366 9.0 8.0 8.5 2.4 8414 chr3L 24012386 intergenic not near genes chr3L 24016593 intergenic not near genes chr3L 24020800 intergenic not near genes chr3L_23_24015001 chr3L_24015001 RAL-395 2186 chr3L 24021254 24021314 chr3L 24022437 24022497 1360 24 1182 6.5 5.5 6.0 3.4 1243 chr3L 24021254 intergenic not near genes chr3L 24021876 intergenic not near genes chr3L 24022497 intergenic not near genes chr3L_24_24020001 chr3L_24020001 RAL-395 2187 chr3L 24038319 24038328 chr3L 24038712 24038721 G3 8 393 16.5 14.0 15.2 0.5 402 chr3L 24038319 intergenic not near genes chr3L 24038520 intergenic not near genes chr3L 24038721 intergenic not near genes chr3L_8_24035001 chr3L_24035001 RAL-395 2188 chr3L 24040668 24040679 chr3L 24040827 24040838 9 159 14.5 21.0 17.8 0.5 170 chr3L 24040668 intergenic not near genes chr3L 24040753 intergenic not near genes chr3L 24040838 intergenic not near genes chr3L_9_24040001 chr3L_24040001 RAL-395 2189 chr3L 24168767 24168821 chr3L 24176121 24176175 ZAM 37 7354 8.0 13.0 10.5 3.2 7408 chr3L 24168767 intron Snap25 + chr3L 24172471 intron Snap25 + chr3L 24176175 intron Snap25 + chr3L_37_24170001 chr3L_24170001 RAL-395 2190 chr3L 24282124 24282166 chr3L 24282234 24282276 15 110 6.0 4.0 5.0 2.5 152 chr3L 24282124 intron Snap25 + chr3L 24282200 intron Snap25 + chr3L 24282276 intron Snap25 + chr3L_15_24280001 chr3L_24280001 RAL-395 2191 chr3L 24324274 24324326 chr3L 24324394 24324447 11 120 4.0 1.0 2.5 3.1 173 chr3L 24324274 intergenic not near genes chr3L 24324360 intergenic not near genes chr3L 24324447 intergenic nvd + chr3L_11_24320001 chr3L_24320001 RAL-395 2192 chr3L 24363214 24363268 chr3L 24363318 24363372 25 103 7.5 7.5 7.5 2.9 158 chr3L 24363214 intron nvd + chr3L 24363293 intron nvd + chr3L 24363372 intron nvd + chr3L_25_24360001 chr3L_24360001 RAL-395 2193 chr3L 24730919 24730968 chr3L 24731034 24731083 13 114 7.5 5.5 6.5 1.7 164 chr3L 24730919 intron scro + chr3L 24731001 intron scro + chr3L 24731083 intron scro + chr3L_13_24730001 chr3L_24730001 RAL-395 2194 chr3L 24791871 24791909 chr3L 24796676 24796714 Doc 9 4805 5.5 7.0 6.2 1.2 4843 chr3L 24791871 intergenic not near genes chr3L 24794292 intergenic not near genes chr3L 24796714 intergenic not near genes chr3L_9_24790001 chr3L_24790001 RAL-395 2195 chr3L 18198930 18198931 chr3L 24821492 24821492 4 6622561 1.0 28.0 14.5 0.3 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-395 2196 chr3L 25331613 25331653 chr3L 25331729 25331770 13 117 9.5 8.5 9.0 1.3 157 chr3L 25331613 intergenic not near genes chr3L 25331692 intergenic not near genes chr3L 25331770 intergenic not near genes chr3L_13_25330001 chr3L_25330001 RAL-395 2197 chr3L 25343236 25343286 chr3L 25343354 25343404 21 118 5.5 5.0 5.2 3.4 168 chr3L 25343236 intergenic not near genes chr3L 25343320 intergenic not near genes chr3L 25343404 intergenic not near genes chr3L_21_25340001 chr3L_25340001 RAL-395 2198 chr3L 24040803 24040826 chr3L 25396386 25396409 INE-1 12 1355584 27.5 31.5 29.5 0.4 1355606 chr3L 24040803 intergenic not near genes chr3L 24718606 intergenic not near genes chr3L 25396409 intergenic not near genes chr3L_12_24715001 chr3L_24715001 RAL-395 2199 chr3L 26009400 26009442 chr3L 26009517 26009558 16 116 6.5 3.0 4.8 2.8 158 chr3L 26009400 intron CG40178 - chr3L 26009479 intron CG40178 - chr3L 26009558 intron CG40178 - chr3L_16_26005001 chr3L_26005001 RAL-395 2200 chr3L 26694912 26694957 chr3L 26695018 26695063 19 104 6.5 11.0 8.8 1.9 151 chr3L 26694912 intergenic not near genes chr3L 26694988 intergenic not near genes chr3L 26695063 intergenic not near genes chr3L_19_26690001 chr3L_26690001 RAL-395 2201 chr3L 27356090 27356099 chr3L 27357315 27357324 1360 6 1225 6.0 3.5 4.8 1.0 1234 chr3L 27356090 intron Dbp80 + chr3L 27356707 intron Dbp80 + chr3L 27357324 intron Dbp80 + chr3L_6_27355001 chr3L_27355001 RAL-395 2202 chr3L 27368855 27368896 chr3L 27369426 27369467 18 571 10.0 4.5 7.2 2.2 612 chr3L 27368855 intron Dbp80 + chr3L 27369161 intron Dbp80 + chr3L 27369467 intron Dbp80 + chr3L_18_27365001 chr3L_27365001 RAL-395 2203 chr3L 27390433 27390712 chr3L 27390680 27390817 21 118 57.0 62.0 59.5 0.3 384 chr3L 27390433 intron Dbp80 + chr3L 27390625 intron Dbp80 + chr3L 27390817 intron Dbp80 + chr3L_21_27390001 chr3L_27390001 RAL-395 2204 chr3L 27727615 27727661 chr3L 27728748 27728794 G-element 7 1133 10.0 5.5 7.8 0.8 1179 chr3L 27727615 intergenic not near genes chr3L 27728204 intergenic not near genes chr3L 27728794 intergenic not near genes chr3L_7_27725001 chr3L_27725001 RAL-395 2205 chr3L 27980671 27980730 chr3L 27985495 27985553 Doc 17 4823 6.0 9.0 7.5 2.0 4882 chr3L 27980671 intron CG17514 - chr3L 27983112 intron CG17514 - chr3L 27985553 intron CG17514 - chr3L_17_27980001 chr3L_27980001 RAL-395 2206 chr3R 758844 758877 chr3R 758975 759008 5 130 5.0 2.0 3.5 1.1 164 chr3R 758844 intergenic not near genes chr3R 758926 intergenic not near genes chr3R 759008 intergenic not near genes chr3R_5_755001 chr3R_755001 RAL-395 2207 chr3R 1062364 1062414 chr3R 1062546 1062598 21 184 5.0 11.5 8.2 2.3 234 chr3R 1062364 intron CG15831 + chr3R 1062481 intron CG15831 + chr3R 1062598 intron CG15831 + chr3R_21_1060001 chr3R_1060001 RAL-395 2208 chr3R 1443412 1443455 chr3R 1443514 1443561 5 103 3.0 4.5 3.8 1.0 149 chr3R 1443412 intron CG40155 + chr3R 1443486 intron CG40155 + chr3R 1443561 intron CG40155 + chr3R_5_1440001 chr3R_1440001 RAL-395 2209 chr3R 1451443 1451453 chr3R 1455015 1455026 Max-element 5 3573 27.0 39.5 33.2 0.1 3583 chr3R 1451443 intron CG40155 + chr3R 1453234 intron CG40155 + chr3R 1455026 exon CG40155 + chr3R_5_1450001 chr3R_1450001 RAL-395 2210 chr3R 1680274 1680291 chr3R 1680390 1680407 9 116 7.5 13.0 10.2 0.8 133 chr3R 1680274 intergenic not near genes chr3R 1680340 intergenic not near genes chr3R 1680407 intergenic not near genes chr3R_9_1680001 chr3R_1680001 RAL-395 2211 chr3R 1850860 1850902 chr3R 1853513 1853522 INE-1 15 2650 5.0 6.0 5.5 2.3 2662 chr3R 1850860 intron CG42623 + chr3R 1852191 intron CG42623 + chr3R 1853522 intron CG42623 + chr3R_15_1850001 chr3R_1850001 RAL-395 2212 chr3R 1867058 1867063 chr3R 1867168 1867173 5 110 36.5 30.0 33.2 0.1 115 chr3R 1867058 intron CG42623 + chr3R 1867116 intron CG42623 + chr3R 1867173 intron CG42623 + chr3R_5_1865001 chr3R_1865001 RAL-395 2213 chr3R 1939029 1939083 chr3R 1939149 1939203 12 118 1.5 5.0 3.2 2.9 174 chr3R 1939029 intergenic not near genes chr3R 1939116 intergenic not near genes chr3R 1939203 intergenic not near genes chr3R_12_1935001 chr3R_1935001 RAL-395 2214 chr3R 2465443 2465448 chr3R 4562012 4562017 X-element 7 2096569 28.0 33.5 30.8 0.2 2096574 chr3R 2465443 intergenic not near genes chr3R 3513730 intron Parp - chr3R 4562017 intergenic not near genes chr3R_7_3510001 chr3R_3510001 RAL-395 2215 chr3R 1511856 1511859 chr3R 2516749 2516752 297 4 1004893 13.5 41.5 27.5 0.1 1004896 chr3R 1511856 intergenic not near genes chr3R 2014304 intergenic not near genes chr3R 2516752 intergenic not near genes chr3R_4_2010001 chr3R_2010001 RAL-395 2216 chr3R 2534116 2534156 chr3R 2541710 2541750 14 7594 33.0 31.5 32.2 0.4 7634 chr3R 2534116 intergenic not near genes chr3R 2537933 intergenic not near genes chr3R 2541750 intergenic not near genes chr3R_14_2535001 chr3R_2535001 RAL-395 2217 chr3R 2859821 2859844 chr3R 2859956 2859979 11 134 6.5 5.5 6.0 1.6 158 chr3R 2859821 intergenic not near genes chr3R 2859900 intergenic not near genes chr3R 2859979 intergenic not near genes chr3R_11_2855001 chr3R_2855001 RAL-395 2218 chr3R 2984906 2984960 chr3R 2985008 2985062 34 101 6.5 8.0 7.2 4.1 156 chr3R 2984906 intron CG42618 - chr3R 2984984 intron CG42618 - chr3R 2985062 intron CG42618 - chr3R_34_2980001 chr3R_2980001 RAL-395 2219 chr3R 1446701 1446702 chr3R 2999354 2999355 invader2 4 1552653 18.5 21.5 20.0 0.2 1552654 chr3R 1446701 intron CG40155 + chr3R 2223028 intergenic not near genes chr3R 2999355 intron CG42618 - chr3R_4_2220001 chr3R_2220001 RAL-395 2220 chr3R 3267249 3267282 chr3R 3267404 3267441 13 155 31.0 46.0 38.5 0.3 192 chr3R 3267249 intergenic not near genes chr3R 3267345 intergenic not near genes chr3R 3267441 intergenic not near genes chr3R_13_3265001 chr3R_3265001 RAL-395 2221 chr3R 3752713 3752751 chr3R 3752822 3752860 20 109 10.5 3.5 7.0 2.5 147 chr3R 3752713 intergenic CG41128 + chr3R 3752786 intergenic CG41128 + chr3R 3752860 intergenic not near genes chr3R_20_3750001 chr3R_3750001 RAL-395 2222 chr3R 3848037 3848046 chr3R 3848164 3848173 4 127 2.5 8.5 5.5 0.6 136 chr3R 3848037 intron CG41099 + chr3R 3848105 intron CG41099 + chr3R 3848173 intron CG41099 + chr3R_4_3845001 chr3R_3845001 RAL-395 2223 chr3R 3916183 3916203 chr3R 3916316 3916336 6 133 5.5 0.5 3.0 1.5 153 chr3R 3916183 intergenic not near genes chr3R 3916260 intergenic not near genes chr3R 3916336 intergenic not near genes chr3R_6_3915001 chr3R_3915001 RAL-395 2224 chr3R 4012478 4012527 chr3R 4012593 4012642 25 114 9.0 3.5 6.2 3.5 164 chr3R 4012478 intergenic not near genes chr3R 4012560 intergenic not near genes chr3R 4012642 intergenic not near genes chr3R_25_4010001 chr3R_4010001 RAL-395 2225 chr3R 4063784 4063804 chr3R 4069089 4069110 9 5306 13.5 31.5 22.5 0.4 5326 chr3R 4063784 intergenic not near genes chr3R 4066447 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_9_4065001 chr3R_4065001 RAL-395 2226 chr3R 3989288 3989307 chr3R 4068940 4068950 mdg1 6 79646 0.0 32.5 16.2 0.3 79662 chr3R 3989288 intergenic not near genes chr3R 4029119 intergenic not near genes chr3R 4068950 intergenic not near genes chr3R_6_4025001 chr3R_4025001 RAL-395 2227 chr3R 4206044 4206100 chr3R 4211645 4211700 mdg3 12 5600 8.5 4.5 6.5 1.6 5656 chr3R 4206044 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211700 intron CG14636 - chr3R_12_4205001 chr3R_4205001 RAL-395 2228 chr3R 4357559 4357585 chr3R 4357703 4357730 19 144 9.5 17.0 13.2 1.3 171 chr3R 4357559 intergenic not near genes chr3R 4357644 intergenic not near genes chr3R 4357730 intergenic not near genes chr3R_19_4355001 chr3R_4355001 RAL-395 2229 chr3R 4366731 4366785 chr3R 4375140 4375194 roo 24 8409 8.0 6.0 7.0 3.0 8463 chr3R 4366731 3` UTR CG1090 + chr3R 4370962 intergenic not near genes chr3R 4375194 5` UTR CR44922 + chr3R_24_4370001 chr3R_4370001 RAL-395 2230 chr3R 4376545 4376575 chr3R 4377020 4377050 14 475 6.5 7.5 7.0 1.8 505 chr3R 4376545 5` UTR CR44922 + chr3R 4376798 5` UTR CR44922 + chr3R 4377050 5` UTR CR44922 + chr3R_14_4375001 chr3R_4375001 RAL-395 2231 chr3R 4408389 4408438 chr3R 4412719 4412767 Juan 21 4329 11.0 7.0 9.0 2.1 4378 chr3R 4408389 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412767 intron CG32944 - chr3R_21_4410001 chr3R_4410001 RAL-395 2232 chr3R 4420550 4420655 chr3R 4420652 4420792 36 146 0.0 1.5 0.8 20.0 242 chr3R 4420550 intergenic not near genes chr3R 4420671 intergenic not near genes chr3R 4420792 intergenic not near genes chr3R_36_4420001 chr3R_4420001 RAL-395 2233 chr3R 4609523 4609575 chr3R 4610713 4610763 1360 27 1189 7.5 14.5 11.0 2.2 1240 chr3R 4609523 intergenic not near genes chr3R 4610143 intergenic not near genes chr3R 4610763 intergenic not near genes chr3R_27_4610001 chr3R_4610001 RAL-395 2234 chr3R 4658011 4658067 chr3R 4658120 4658176 19 109 3.5 6.0 4.8 3.3 165 chr3R 4658011 intergenic spartin + chr3R 4658094 intergenic spartin + chr3R 4658176 intergenic spartin + chr3R_19_4655001 chr3R_4655001 RAL-395 2235 chr3R 4683156 4683208 chr3R 4684941 4684993 S-element 21 1785 7.5 9.5 8.5 2.2 1837 chr3R 4683156 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684993 intron CG43427 + chr3R_21_4680001 chr3R_4680001 RAL-395 2236 chr3R 4689079 4689132 chr3R 4689227 4689280 28 150 53.0 59.5 56.2 0.5 201 chr3R 4689079 intron CG43427 + chr3R 4689180 intron CG43427 + chr3R 4689280 intron CG43427 + chr3R_28_4685001 chr3R_4685001 RAL-395 2237 chr3R 4753221 4753275 chr3R 4757550 4757551 F-element 30 4327 9.0 8.5 8.8 3.1 4330 chr3R 4753221 intron,intron atms +,CG44098 - chr3R 4755386 intron,intron atms +,CG44098 - chr3R 4757551 intron,exon atms +,CG44098 - chr3R_30_4755001 chr3R_4755001 RAL-395 2238 chr3R 4759698 4759742 chr3R 4761221 4761265 hopper2 31 1523 11.0 14.5 12.8 2.2 1567 chr3R 4759698 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761265 intron,intron atms +,CG44098 - chr3R_31_4760001 chr3R_4760001 RAL-395 2239 chr3R 4769132 4769191 chr3R 4769236 4769287 22 102 7.5 9.0 8.2 2.4 155 chr3R 4769132 intron,intron atms +,CG44098 - chr3R 4769210 intron,intron atms +,CG44098 - chr3R 4769287 intron,intron atms +,CG44098 - chr3R_22_4765001 chr3R_4765001 RAL-395 2240 chr3R 4861539 4861595 chr3R 4861646 4861702 36 104 8.0 9.0 8.5 3.8 163 chr3R 4861539 intron opa + chr3R 4861620 intron opa + chr3R 4861702 intron opa + chr3R_36_4860001 chr3R_4860001 RAL-395 2241 chr3R 4887451 4887510 chr3R 4894854 4894912 rover 20 7402 5.0 4.0 4.5 3.6 7461 chr3R 4887451 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894912 intergenic not near genes chr3R_20_4890001 chr3R_4890001 RAL-395 2242 chr3R 4896270 4896323 chr3R 4896389 4896442 29 118 3.0 6.0 4.5 5.3 172 chr3R 4896270 intergenic CR45580 + chr3R 4896356 intergenic CR45580 + chr3R 4896442 5` UTR CR45580 + chr3R_29_4895001 chr3R_4895001 RAL-395 2243 chr3R 4948362 4948392 chr3R 4949010 4949039 12 648 29.0 21.5 25.2 0.5 677 chr3R 4948362 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948700 intergenic UbcD6 - chr3R 4949039 3` UTR UbcD6 - chr3R_12_4945001 chr3R_4945001 RAL-395 2244 chr3R 4981385 4981392 chr3R 4981490 4981496 5 105 24.0 10.0 17.0 0.3 111 chr3R 4981385 intergenic not near genes chr3R 4981440 intergenic not near genes chr3R 4981496 intergenic not near genes chr3R_5_4980001 chr3R_4980001 RAL-395 2245 chr3R 4981395 4981439 chr3R 4981489 4981544 27 104 7.0 10.0 8.5 2.8 149 chr3R 4981395 intergenic not near genes chr3R 4981470 intergenic not near genes chr3R 4981544 intergenic CG14662 - chr3R_27_4980001 chr3R_4980001 RAL-395 2246 chr3R 4998371 4998378 chr3R 4998499 4998506 4 128 14.5 23.5 19.0 0.2 135 chr3R 4998371 intron CG2022 - chr3R 4998438 intron CG2022 - chr3R 4998506 intron CG2022 - chr3R_4_4995001 chr3R_4995001 RAL-395 2247 chr3R 5045827 5045878 chr3R 5052955 5053005 HMS-Beagle 20 7128 6.0 6.5 6.2 2.8 7178 chr3R 5045827 3` UTR CR43635 - chr3R 5049416 intergenic not near genes chr3R 5053005 intergenic CR45588 - chr3R_20_5045001 chr3R_5045001 RAL-395 2248 chr3R 5067957 5068014 chr3R 5073500 5073557 mdg3 33 5543 6.0 8.0 7.0 4.1 5600 chr3R 5067957 intergenic not near genes chr3R 5070757 intergenic not near genes chr3R 5073557 intergenic not near genes chr3R_33_5070001 chr3R_5070001 RAL-395 2249 chr3R 5077465 5077521 chr3R 5077736 5077795 25 273 8.5 4.5 6.5 3.3 330 chr3R 5077465 intergenic corto - chr3R 5077630 intergenic corto - chr3R 5077795 3` UTR corto - chr3R_25_5075001 chr3R_5075001 RAL-395 2250 chr3R 5105521 5105579 chr3R 5105629 5105687 35 107 4.5 7.0 5.8 5.1 166 chr3R 5105521 intergenic not near genes chr3R 5105604 intergenic not near genes chr3R 5105687 intergenic not near genes chr3R_35_5105001 chr3R_5105001 RAL-395 2251 chr3R 5236194 5236246 chr3R 5236347 5236400 28 152 4.0 10.0 7.0 3.5 206 chr3R 5236194 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236297 3` UTR rtp - chr3R 5236400 exon rtp - chr3R_28_5235001 chr3R_5235001 RAL-395 2252 chr3R 5250859 5250913 chr3R 5250995 5251049 13 136 8.0 6.0 7.0 1.6 190 chr3R 5250859 intron CG12163 - chr3R 5250954 intron CG12163 - chr3R 5251049 intron CG12163 - chr3R_13_5250001 chr3R_5250001 RAL-395 2253 chr3R 5278064 5278119 chr3R 5278171 5278226 32 107 7.5 6.0 6.8 4.1 162 chr3R 5278064 intron mtd - chr3R 5278145 intron mtd - chr3R 5278226 intron mtd - chr3R_32_5275001 chr3R_5275001 RAL-395 2254 chr3R 5282977 5282982 chr3R 5283082 5283089 4 104 19.5 18.5 19.0 0.2 112 chr3R 5282977 intron mtd - chr3R 5283033 intron mtd - chr3R 5283089 intron mtd - chr3R_4_5280001 chr3R_5280001 RAL-395 2255 chr3R 5338374 5338428 chr3R 5343577 5343589 Rt1c 30 5201 10.0 15.5 12.8 2.2 5215 chr3R 5338374 intron mtd - chr3R 5340982 intron mtd - chr3R 5343589 intron mtd - chr3R_30_5340001 chr3R_5340001 RAL-395 2256 chr3R 5445943 5445994 chr3R 5452429 5452480 Burdock 27 6485 6.0 12.0 9.0 2.7 6537 chr3R 5445943 intron CG14669 + chr3R 5449212 intron CG14669 + chr3R 5452480 intron CG14669 + chr3R_27_5445001 chr3R_5445001 RAL-395 2257 chr3R 5453290 5453346 chr3R 5453428 5453485 31 137 9.0 5.5 7.2 3.8 195 chr3R 5453290 intron CG14669 + chr3R 5453388 intron CG14669 + chr3R 5453485 intron CG14669 + chr3R_31_5450001 chr3R_5450001 RAL-395 2258 chr3R 5515117 5515167 chr3R 5515220 5515270 23 103 10.0 10.5 10.2 2.1 153 chr3R 5515117 intron Nmdar1 - chr3R 5515194 intron Nmdar1 - chr3R 5515270 intron Nmdar1 - chr3R_23_5515001 chr3R_5515001 RAL-395 2259 chr3R 5626407 5626458 chr3R 5626734 5626785 30 325 9.0 10.0 9.5 2.9 378 chr3R 5626407 intergenic RpL13A + chr3R 5626596 intergenic not near genes chr3R 5626785 intergenic not near genes chr3R_30_5625001 chr3R_5625001 RAL-395 2260 chr3R 5726076 5726123 chr3R 5726252 5726311 23 187 4.5 4.5 4.5 4.2 235 chr3R 5726076 intergenic not near genes chr3R 5726194 intergenic not near genes chr3R 5726311 intergenic not near genes chr3R_23_5725001 chr3R_5725001 RAL-395 2261 chr3R 5735577 5735625 chr3R 5736975 5737021 27 1397 73.5 58.5 66.0 0.4 1444 chr3R 5735577 exon CG2100 - chr3R 5736299 5` UTR CG2100 - chr3R 5737021 exon CG1236 + chr3R_27_5735001 chr3R_5735001 RAL-395 2262 chr3R 5745988 5746043 chr3R 5746255 5746310 pogo 28 266 11.0 10.5 10.8 2.4 322 chr3R 5745988 3` UTR Madm + chr3R 5746149 3` UTR Madm + chr3R 5746310 3` UTR Madm + chr3R_28_5745001 chr3R_5745001 RAL-395 2263 chr3R 5746995 5747042 chr3R 5753212 5753258 diver 20 6216 7.5 5.0 6.2 2.8 6263 chr3R 5746995 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753258 intergenic CG2091 - chr3R_20_5750001 chr3R_5750001 RAL-395 2264 chr3R 5767238 5767298 chr3R 5767673 5767734 36 436 11.5 6.5 9.0 3.6 496 chr3R 5767238 intron CG2082 - chr3R 5767486 intron CG2082 - chr3R 5767734 intron CG2082 - chr3R_36_5765001 chr3R_5765001 RAL-395 2265 chr3R 5769205 5769265 chr3R 5769329 5769388 29 124 5.5 4.0 4.8 5.0 183 chr3R 5769205 intron CG2082 - chr3R 5769296 intron CG2082 - chr3R 5769388 intron CG2082 - chr3R_29_5765001 chr3R_5765001 RAL-395 2266 chr3R 5809086 5809143 chr3R 5809353 5809410 pogo 36 266 8.0 7.5 7.8 4.1 324 chr3R 5809086 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809410 3` UTR CG11000 + chr3R_36_5805001 chr3R_5805001 RAL-395 2267 chr3R 5822357 5822403 chr3R 5823550 5823596 1360 10 1193 6.5 4.5 5.5 1.5 1239 chr3R 5822357 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823596 3` UTR CG2023 - chr3R_10_5820001 chr3R_5820001 RAL-395 2268 chr3R 5836176 5836181 chr3R 5836306 5836311 5 130 25.0 19.0 22.0 0.2 135 chr3R 5836176 intron,3` UTR CG1208 +,CR45192 - chr3R 5836244 intron CG1208 + chr3R 5836311 intron CG1208 + chr3R_5_5835001 chr3R_5835001 RAL-395 2269 chr3R 5927537 5927584 chr3R 5927802 5927850 pogo 28 266 12.5 7.0 9.8 2.6 313 chr3R 5927537 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927850 intron CG34113 - chr3R_28_5925001 chr3R_5925001 RAL-395 2270 chr3R 5989311 5989367 chr3R 5989418 5989467 32 108 8.5 10.5 9.5 3.0 156 chr3R 5989311 5` UTR CR44927 + chr3R 5989389 5` UTR CR44927 + chr3R 5989467 5` UTR CR44927 + chr3R_32_5985001 chr3R_5985001 RAL-395 2271 chr3R 6015942 6015995 chr3R 6024448 6024502 Tirant 33 8506 5.5 7.5 6.5 4.4 8560 chr3R 6015942 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024502 intergenic not near genes chr3R_33_6020001 chr3R_6020001 RAL-395 2272 chr3R 6029937 6029985 chr3R 6030163 6030210 6 225 3.0 7.0 5.0 1.0 273 chr3R 6029937 intergenic not near genes chr3R 6030074 intergenic not near genes chr3R 6030210 intergenic not near genes chr3R_6_6030001 chr3R_6030001 RAL-395 2273 chr3R 6048419 6048474 chr3R 6048528 6048583 27 108 6.5 11.0 8.8 2.8 164 chr3R 6048419 intergenic not near genes chr3R 6048501 intergenic not near genes chr3R 6048583 intergenic not near genes chr3R_27_6045001 chr3R_6045001 RAL-395 2274 chr3R 6117386 6117440 chr3R 6117533 6117571 23 146 7.5 11.0 9.2 2.3 185 chr3R 6117386 intergenic not near genes chr3R 6117478 intergenic not near genes chr3R 6117571 intergenic not near genes chr3R_23_6115001 chr3R_6115001 RAL-395 2275 chr3R 6121165 6121179 chr3R 6121409 6121420 BS 4 243 0.0 11.5 5.8 0.6 255 chr3R 6121165 intergenic not near genes chr3R 6121292 intergenic not near genes chr3R 6121420 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-395 2276 chr3R 6158060 6158101 chr3R 6158300 6158341 16 240 4.0 11.0 7.5 1.9 281 chr3R 6158060 intergenic not near genes chr3R 6158200 intergenic not near genes chr3R 6158341 intergenic not near genes chr3R_16_6155001 chr3R_6155001 RAL-395 2277 chr3R 6158488 6158518 chr3R 6167097 6167126 Tirant 13 8608 16.0 9.0 12.5 1.0 8638 chr3R 6158488 intergenic not near genes chr3R 6162807 intergenic not near genes chr3R 6167126 intergenic CG1077 + chr3R_13_6160001 chr3R_6160001 RAL-395 2278 chr3R 6158519 6158538 chr3R 6167091 6167142 Tirant 10 8595 9.0 7.5 8.2 1.1 8623 chr3R 6158519 intergenic not near genes chr3R 6162830 intergenic not near genes chr3R 6167142 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-395 2279 chr3R 6175147 6175204 chr3R 6182445 6182495 HMS-Beagle2 21 7298 9.0 9.5 9.2 2.1 7348 chr3R 6175147 intergenic Osi1 + chr3R 6178821 intron CR45194 + chr3R 6182495 intergenic CR45194 + chr3R_21_6175001 chr3R_6175001 RAL-395 2280 chr3R 6191149 6191152 chr3R 6191255 6191258 5 106 20.0 8.5 14.2 0.3 109 chr3R 6191149 intron NPFR + chr3R 6191204 intron NPFR + chr3R 6191258 intron NPFR + chr3R_5_6190001 chr3R_6190001 RAL-395 2281 chr3R 6191154 6191194 chr3R 6191252 6191299 13 102 9.5 7.5 8.5 1.4 145 chr3R 6191154 intron NPFR + chr3R 6191226 intron NPFR + chr3R 6191299 intron NPFR + chr3R_13_6190001 chr3R_6190001 RAL-395 2282 chr3R 6192958 6192987 chr3R 6193125 6193154 16 167 6.0 5.5 5.8 2.4 196 chr3R 6192958 intron NPFR + chr3R 6193056 intron NPFR + chr3R 6193154 intron NPFR + chr3R_16_6190001 chr3R_6190001 RAL-395 2283 chr3R 6197623 6197668 chr3R 6198190 6198243 23 573 7.0 8.5 7.8 2.6 620 chr3R 6197623 intergenic not near genes chr3R 6197933 intergenic not near genes chr3R 6198243 intergenic not near genes chr3R_23_6195001 chr3R_6195001 RAL-395 2284 chr3R 6206264 6206314 chr3R 6206507 6206557 BS 31 240 13.0 8.5 10.8 2.6 293 chr3R 6206264 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206557 intron Osi24 + chr3R_31_6205001 chr3R_6205001 RAL-395 2285 chr3R 6334778 6334809 chr3R 6334902 6334933 8 124 0.0 11.5 5.8 1.2 155 chr3R 6334778 intergenic not near genes chr3R 6334856 intergenic not near genes chr3R 6334933 intergenic Osi19 + chr3R_8_6330001 chr3R_6330001 RAL-395 2286 chr3R 6461571 6461607 chr3R 6461677 6461712 16 106 5.0 10.5 7.8 1.8 141 chr3R 6461571 intergenic not near genes chr3R 6461642 intergenic not near genes chr3R 6461712 intergenic not near genes chr3R_16_6460001 chr3R_6460001 RAL-395 2287 chr3R 6510003 6510050 chr3R 6515110 6515157 jockey 16 5107 8.0 5.5 6.8 2.1 5154 chr3R 6510003 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515157 intergenic not near genes chr3R_16_6510001 chr3R_6510001 RAL-395 2288 chr3R 6524944 6524983 chr3R 6525063 6525102 12 119 5.5 6.5 6.0 1.7 158 chr3R 6524944 intergenic not near genes chr3R 6525023 intergenic not near genes chr3R 6525102 intergenic not near genes chr3R_12_6525001 chr3R_6525001 RAL-395 2289 chr3R 6526323 6526379 chr3R 6526541 6526597 28 216 6.5 9.0 7.8 3.2 274 chr3R 6526323 intergenic not near genes chr3R 6526460 intergenic not near genes chr3R 6526597 intergenic not near genes chr3R_28_6525001 chr3R_6525001 RAL-395 2290 chr3R 6737476 6737531 chr3R 6739289 6739344 Doc 33 1812 6.0 11.5 8.8 3.4 1868 chr3R 6737476 intron pb - chr3R 6738410 intron pb - chr3R 6739344 intron pb - chr3R_33_6735001 chr3R_6735001 RAL-395 2291 chr3R 6803739 6803747 chr3R 6803841 6803849 6 102 0.0 11.0 5.5 0.9 110 chr3R 6803739 intergenic not near genes chr3R 6803794 intergenic not near genes chr3R 6803849 intergenic not near genes chr3R_6_6800001 chr3R_6800001 RAL-395 2292 chr3R 6856359 6856399 chr3R 6856501 6856542 20 143 7.0 6.0 6.5 2.7 183 chr3R 6856359 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856542 intergenic not near genes chr3R_20_6855001 chr3R_6855001 RAL-395 2293 chr3R 6862195 6862251 chr3R 6862308 6862364 27 112 5.0 6.5 5.8 4.0 169 chr3R 6862195 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862364 intergenic not near genes chr3R_27_6860001 chr3R_6860001 RAL-395 2294 chr3R 6900677 6900719 chr3R 6901262 6901304 10 584 21.5 28.0 24.8 0.4 627 chr3R 6900677 intron Antp - chr3R 6900990 intron Antp - chr3R 6901304 intron Antp - chr3R_10_6900001 chr3R_6900001 RAL-395 2295 chr3R 6961169 6961197 chr3R 6961269 6961302 11 103 16.5 11.5 14.0 0.7 133 chr3R 6961169 intron Antp - chr3R 6961236 intron Antp - chr3R 6961302 intron Antp - chr3R_11_6960001 chr3R_6960001 RAL-395 2296 chr3R 6968422 6968474 chr3R 6968532 6968584 20 109 11.0 9.0 10.0 1.8 162 chr3R 6968422 intron Antp - chr3R 6968503 intron Antp - chr3R 6968584 intron Antp - chr3R_20_6965001 chr3R_6965001 RAL-395 2297 chr3R 6979947 6979984 chr3R 6980251 6980286 12 305 3.0 4.0 3.5 2.7 339 chr3R 6979947 intron Antp - chr3R 6980116 intron Antp - chr3R 6980286 intron Antp - chr3R_12_6980001 chr3R_6980001 RAL-395 2298 chr3R 7103264 7103312 chr3R 7103366 7103410 14 101 8.0 6.0 7.0 1.8 146 chr3R 7103264 intron Alh - chr3R 7103337 intron Alh - chr3R 7103410 intron Alh - chr3R_14_7100001 chr3R_7100001 RAL-395 2299 chr3R 7126477 7126531 chr3R 7126598 7126652 25 120 7.0 6.5 6.8 3.2 175 chr3R 7126477 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126564 3` UTR CG10068 - chr3R 7126652 3` UTR CG10068 - chr3R_25_7125001 chr3R_7125001 RAL-395 2300 chr3R 7168894 7168921 chr3R 7168997 7169024 17 102 16.5 13.5 15.0 1.1 130 chr3R 7168894 intron sas + chr3R 7168959 intron sas + chr3R 7169024 intron sas + chr3R_17_7165001 chr3R_7165001 RAL-395 2301 chr3R 7168924 7168934 chr3R 7168994 7169037 9 99 13.5 13.0 13.2 0.6 113 chr3R 7168924 intron sas + chr3R 7168980 intron sas + chr3R 7169037 intron sas + chr3R_9_7165001 chr3R_7165001 RAL-395 2302 chr3R 7173658 7173664 chr3R 7173764 7173770 6 106 16.0 7.5 11.8 0.5 112 chr3R 7173658 intron sas + chr3R 7173714 intron sas + chr3R 7173770 intron sas + chr3R_6_7170001 chr3R_7170001 RAL-395 2303 chr3R 7173667 7173709 chr3R 7173759 7173806 17 104 5.5 6.5 6.0 2.4 139 chr3R 7173667 intron sas + chr3R 7173736 intron sas + chr3R 7173806 intron sas + chr3R_17_7170001 chr3R_7170001 RAL-395 2304 chr3R 7210570 7210613 chr3R 7210673 7210725 13 108 0.0 4.5 2.2 4.1 155 chr3R 7210570 intergenic not near genes chr3R 7210648 intergenic not near genes chr3R 7210725 intergenic not near genes chr3R_13_7210001 chr3R_7210001 RAL-395 2305 chr3R 7217431 7217488 chr3R 7217678 7217733 27 246 7.5 8.0 7.8 3.1 302 chr3R 7217431 intergenic CG14605 -,CG14606 - chr3R 7217582 intergenic CG14605 -,CG14606 - chr3R 7217733 exon CG14605 - chr3R_27_7215001 chr3R_7215001 RAL-395 2306 chr3R 7251807 7251861 chr3R 7251910 7251961 32 98 10.0 5.5 7.8 3.6 154 chr3R 7251807 exon Obp84a - chr3R 7251884 exon Obp84a - chr3R 7251961 intergenic Obp84a -,Gld -,CG10050 + chr3R_32_7250001 chr3R_7250001 RAL-395 2307 chr3R 7252386 7252428 chr3R 7252499 7252541 15 113 6.5 10.0 8.2 1.6 155 chr3R 7252386 3` UTR Gld - chr3R 7252464 3` UTR Gld - chr3R 7252541 3` UTR Gld - chr3R_15_7250001 chr3R_7250001 RAL-395 2308 chr3R 7319770 7319786 chr3R 7319877 7319893 9 105 18.5 14.5 16.5 0.5 123 chr3R 7319770 intergenic not near genes chr3R 7319832 intergenic not near genes chr3R 7319893 intergenic not near genes chr3R_9_7315001 chr3R_7315001 RAL-395 2309 chr3R 7538634 7538688 chr3R 7538742 7538796 30 107 11.5 3.5 7.5 3.5 162 chr3R 7538634 intergenic alpha-Est4 -,alpha-Est3 - chr3R 7538715 intergenic alpha-Est4 -,alpha-Est3 - chr3R 7538796 intergenic alpha-Est3 -,alpha-Est4 - chr3R_30_7535001 chr3R_7535001 RAL-395 2310 chr3R 7677901 7677941 chr3R 7678040 7678080 15 137 4.0 9.0 6.5 2.0 179 chr3R 7677901 intron Nlg1 + chr3R 7677990 intron Nlg1 + chr3R 7678080 intron Nlg1 + chr3R_15_7675001 chr3R_7675001 RAL-395 2311 chr3R 7680828 7680832 chr3R 7681485 7681488 5 657 18.0 3.5 10.8 0.4 660 chr3R 7680828 intron Nlg1 + chr3R 7681158 intron Nlg1 + chr3R 7681488 intron Nlg1 + chr3R_5_7680001 chr3R_7680001 RAL-395 2312 chr3R 7680835 7680871 chr3R 7681484 7681528 16 652 7.5 3.5 5.5 2.5 693 chr3R 7680835 intron Nlg1 + chr3R 7681182 intron Nlg1 + chr3R 7681528 intron Nlg1 + chr3R_16_7680001 chr3R_7680001 RAL-395 2313 chr3R 7684405 7684433 chr3R 7686348 7686376 22 1943 19.0 10.0 14.5 1.4 1971 chr3R 7684405 intron Nlg1 + chr3R 7685390 intron Nlg1 + chr3R 7686376 intron Nlg1 + chr3R_22_7685001 chr3R_7685001 RAL-395 2314 chr3R 7694553 7694603 chr3R 7713640 7713690 invader3 9 19087 6.5 7.0 6.8 1.2 19137 chr3R 7694553 3` UTR Nlg1 + chr3R 7704122 intergenic not near genes chr3R 7713690 intergenic not near genes chr3R_9_7700001 chr3R_7700001 RAL-395 2315 chr3R 7729445 7729493 chr3R 7737409 7737456 Stalker2 23 7963 10.0 11.5 10.8 1.9 8011 chr3R 7729445 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737456 intergenic not near genes chr3R_23_7730001 chr3R_7730001 RAL-395 2316 chr3R 7846515 7846573 chr3R 7846877 7846935 19 362 6.5 9.0 7.8 2.2 420 chr3R 7846515 intron CG34384 + chr3R 7846725 exon CG34384 + chr3R 7846935 exon CG34384 + chr3R_19_7845001 chr3R_7845001 RAL-395 2317 chr3R 7874723 7874781 chr3R 7875001 7875059 40 278 3.5 11.5 7.5 4.7 336 chr3R 7874723 intron CG17816 - chr3R 7874891 intron CG17816 - chr3R 7875059 intron CG17816 - chr3R_40_7870001 chr3R_7870001 RAL-395 2318 chr3R 7961717 7961767 chr3R 7961824 7961874 15 107 8.5 7.5 8.0 1.7 157 chr3R 7961717 intron dsx - chr3R 7961796 intron dsx - chr3R 7961874 intron dsx - chr3R_15_7960001 chr3R_7960001 RAL-395 2319 chr3R 7973292 7973342 chr3R 7974380 7974431 1360 7 1090 4.0 7.0 5.5 1.1 1139 chr3R 7973292 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974431 3` UTR CD98hc - chr3R_7_7970001 chr3R_7970001 RAL-395 2320 chr3R 8040648 8040670 chr3R 8040758 8040780 7 110 19.0 9.0 14.0 0.5 132 chr3R 8040648 intergenic not near genes chr3R 8040714 intergenic not near genes chr3R 8040780 intergenic CG43060 + chr3R_7_8040001 chr3R_8040001 RAL-395 2321 chr3R 8056125 8056173 chr3R 8056301 8056349 28 176 10.0 8.0 9.0 2.8 224 chr3R 8056125 intergenic CG43060 + chr3R 8056237 intergenic CG43060 + chr3R 8056349 intergenic CG43060 + chr3R_28_8055001 chr3R_8055001 RAL-395 2322 chr3R 8056174 8056183 chr3R 8056299 8056359 11 166 7.0 7.5 7.2 1.3 185 chr3R 8056174 intergenic CG43060 + chr3R 8056266 intergenic CG43060 + chr3R 8056359 intergenic CG43060 + chr3R_11_8055001 chr3R_8055001 RAL-395 2323 chr3R 8070883 8070927 chr3R 8070990 8071034 12 107 10.0 7.5 8.8 1.2 151 chr3R 8070883 intron mAChR-B + chr3R 8070958 intron mAChR-B + chr3R 8071034 intron mAChR-B + chr3R_12_8070001 chr3R_8070001 RAL-395 2324 chr3R 8082560 8082595 chr3R 8082663 8082698 22 103 12.0 12.0 12.0 1.7 138 chr3R 8082560 intron mAChR-B + chr3R 8082629 intron mAChR-B + chr3R 8082698 intron mAChR-B + chr3R_22_8080001 chr3R_8080001 RAL-395 2325 chr3R 8090545 8090564 chr3R 8094044 8094067 297 10 3502 11.5 17.5 14.5 0.6 3522 chr3R 8090545 intergenic CR44330 + chr3R 8092306 intergenic not near genes chr3R 8094067 intergenic CG7900 + chr3R_10_8090001 chr3R_8090001 RAL-395 2326 chr3R 8094387 8094436 chr3R 8099717 8099767 Transpac 17 5331 4.5 5.0 4.8 2.9 5380 chr3R 8094387 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099767 intron CG7900 + chr3R_17_8095001 chr3R_8095001 RAL-395 2327 chr3R 8101736 8101788 chr3R 8104846 8104898 G2 27 3108 9.0 11.5 10.2 2.4 3162 chr3R 8101736 exon CG7900 + chr3R 8103317 intron CG7900 + chr3R 8104898 3` UTR CG7900 + chr3R_27_8100001 chr3R_8100001 RAL-395 2328 chr3R 8107361 8107414 chr3R 8107521 8107574 21 159 8.5 5.5 7.0 2.6 213 chr3R 8107361 intron puc + chr3R 8107468 intron puc + chr3R 8107574 intron puc + chr3R_21_8105001 chr3R_8105001 RAL-395 2329 chr3R 8182631 8182685 chr3R 8182751 8182786 28 119 8.0 7.5 7.8 3.2 155 chr3R 8182631 intergenic not near genes chr3R 8182708 intergenic not near genes chr3R 8182786 intergenic not near genes chr3R_28_8180001 chr3R_8180001 RAL-395 2330 chr3R 8194602 8194647 chr3R 8194718 8194763 20 115 11.5 3.0 7.2 2.4 161 chr3R 8194602 intergenic not near genes chr3R 8194682 intergenic not near genes chr3R 8194763 intergenic not near genes chr3R_20_8190001 chr3R_8190001 RAL-395 2331 chr3R 8207533 8207559 chr3R 8208404 8208430 F-element 6 871 12.5 7.0 9.8 0.6 897 chr3R 8207533 intergenic not near genes chr3R 8207982 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-395 2332 chr3R 8207561 8207584 chr3R 8208399 8208455 F-element 13 868 5.0 6.5 5.8 1.9 894 chr3R 8207561 intergenic not near genes chr3R 8208008 intergenic not near genes chr3R 8208455 intergenic not near genes chr3R_13_8205001 chr3R_8205001 RAL-395 2333 chr3R 8293968 8294022 chr3R 8294172 8294226 36 203 6.0 7.0 6.5 4.8 258 chr3R 8293968 3` UTR CG9626 - chr3R 8294097 3` UTR CG9626 - chr3R 8294226 exon CG9626 - chr3R_36_8290001 chr3R_8290001 RAL-395 2334 chr3R 8303546 8303602 chr3R 8305314 8305370 31 1765 52.5 51.5 52.0 0.6 1824 chr3R 8303546 exon nac - chr3R 8304458 3` UTR Sgt1 - chr3R 8305370 intergenic Sgt1 - chr3R_31_8300001 chr3R_8300001 RAL-395 2335 chr3R 8303183 8303238 chr3R 8305392 8305447 27 2210 76.0 64.5 70.2 0.4 2264 chr3R 8303183 exon nac - chr3R 8304315 3` UTR Sgt1 - chr3R 8305447 intergenic Sgt1 - chr3R_27_8300001 chr3R_8300001 RAL-395 2336 chr3R 8339246 8339247 chr3R 21907534 21907536 33 13568289 38.5 35.0 36.8 0.9 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_33_15120001 chr3R_15120001 RAL-395 2337 chr3R 8376373 8376424 chr3R 8376744 8376795 24 372 48.0 48.0 48.0 0.5 422 chr3R 8376373 intron CG45263 - chr3R 8376584 intron CG45263 - chr3R 8376795 intron CG45263 - chr3R_24_8375001 chr3R_8375001 RAL-395 2338 chr3R 8393545 8393605 chr3R 8393655 8393715 41 104 7.5 9.0 8.2 4.5 170 chr3R 8393545 intron CG45263 - chr3R 8393630 intron CG45263 - chr3R 8393715 intron CG45263 - chr3R_41_8390001 chr3R_8390001 RAL-395 2339 chr3R 8402984 8403038 chr3R 8412175 8412230 roo 26 9191 6.5 9.5 8.0 2.9 9246 chr3R 8402984 intron CG45263 - chr3R 8407607 intron CG45263 - chr3R 8412230 intron CG45263 - chr3R_26_8405001 chr3R_8405001 RAL-395 2340 chr3R 8430781 8430837 chr3R 8430973 8431029 20 192 6.5 4.0 5.2 3.2 248 chr3R 8430781 intron CG45263 - chr3R 8430905 intron CG45263 - chr3R 8431029 intron CG45263 - chr3R_20_8430001 chr3R_8430001 RAL-395 2341 chr3R 8469536 8469583 chr3R 8469642 8469661 26 104 10.0 14.0 12.0 2.0 125 chr3R 8469536 intron CG45263 - chr3R 8469598 intron CG45263 - chr3R 8469661 intron CG45263 - chr3R_26_8465001 chr3R_8465001 RAL-395 2342 chr3R 8541315 8541321 chr3R 8541422 8541427 5 107 23.0 6.5 14.8 0.3 112 chr3R 8541315 intergenic not near genes chr3R 8541371 intergenic not near genes chr3R 8541427 intergenic not near genes chr3R_5_8540001 chr3R_8540001 RAL-395 2343 chr3R 8541323 8541369 chr3R 8541421 8541446 31 105 7.5 6.5 7.0 3.9 123 chr3R 8541323 intergenic not near genes chr3R 8541384 intergenic not near genes chr3R 8541446 intergenic not near genes chr3R_31_8540001 chr3R_8540001 RAL-395 2344 chr3R 8563539 8563593 chr3R 8563676 8563730 25 137 9.0 10.0 9.5 2.4 191 chr3R 8563539 3` UTR CR44291 - chr3R 8563634 3` UTR CR44291 - chr3R 8563730 3` UTR CR44291 - chr3R_25_8560001 chr3R_8560001 RAL-395 2345 chr3R 8570463 8570504 chr3R 8575115 8575166 HMS-Beagle 22 4662 5.5 6.5 6.0 3.1 4703 chr3R 8570463 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575166 intergenic not near genes chr3R_22_8570001 chr3R_8570001 RAL-395 2346 chr3R 8575900 8575948 chr3R 8576009 8576057 28 109 9.0 5.5 7.2 3.4 157 chr3R 8575900 intergenic not near genes chr3R 8575978 intergenic not near genes chr3R 8576057 intergenic not near genes chr3R_28_8575001 chr3R_8575001 RAL-395 2347 chr3R 8578009 8578057 chr3R 8578118 8578166 37 109 10.5 12.0 11.2 3.0 157 chr3R 8578009 intergenic 5-HT2B + chr3R 8578088 intergenic 5-HT2B + chr3R 8578166 intergenic 5-HT2B + chr3R_37_8575001 chr3R_8575001 RAL-395 2348 chr3R 8601749 8601794 chr3R 8610928 8610973 roo 23 9179 8.5 12.5 10.5 2.0 9224 chr3R 8601749 intron 5-HT2B + chr3R 8606361 intron 5-HT2B + chr3R 8610973 intron 5-HT2B + chr3R_23_8605001 chr3R_8605001 RAL-395 2349 chr3R 8621516 8621549 chr3R 8621619 8621623 11 99 17.5 10.5 14.0 0.7 107 chr3R 8621516 intron 5-HT2B + chr3R 8621570 intron 5-HT2B + chr3R 8621623 intron 5-HT2B + chr3R_11_8620001 chr3R_8620001 RAL-395 2350 chr3R 8685271 8685312 chr3R 8685396 8685438 15 126 10.0 6.5 8.2 1.6 167 chr3R 8685271 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685438 intron CR44937 - chr3R_15_8685001 chr3R_8685001 RAL-395 2351 chr3R 8707331 8707383 chr3R 8709797 8709850 jockey 19 2466 0.0 7.0 3.5 4.2 2519 chr3R 8707331 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709850 intergenic not near genes chr3R_19_8705001 chr3R_8705001 RAL-395 2352 chr3R 8885264 8885276 chr3R 8885384 8885391 5 119 8.5 12.0 10.2 0.4 127 chr3R 8885264 intron pyd - chr3R 8885328 intron pyd - chr3R 8885391 intron pyd - chr3R_5_8885001 chr3R_8885001 RAL-395 2353 chr3R 8894881 8894905 chr3R 8896025 8896049 1360 17 1144 10.0 15.0 12.5 1.3 1168 chr3R 8894881 intron pyd - chr3R 8895465 intron pyd - chr3R 8896049 intron pyd - chr3R_17_8895001 chr3R_8895001 RAL-395 2354 chr3R 8917862 8917909 chr3R 8917968 8918015 21 106 3.0 5.0 4.0 4.2 153 chr3R 8917862 intron pyd - chr3R 8917938 intron pyd - chr3R 8918015 intron pyd - chr3R_21_8915001 chr3R_8915001 RAL-395 2355 chr3R 9082024 9082030 chr3R 9082144 9082149 6 120 15.5 12.0 13.8 0.4 125 chr3R 9082024 intron pum - chr3R 9082086 intron pum - chr3R 9082149 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-395 2356 chr3R 9082031 9082073 chr3R 9082141 9082193 18 118 5.0 10.5 7.8 2.0 162 chr3R 9082031 intron pum - chr3R 9082112 intron pum - chr3R 9082193 intron pum - chr3R_18_9080001 chr3R_9080001 RAL-395 2357 chr3R 5897864 5897864 chr3R 9088781 9088823 5 3190929 38.0 28.0 33.0 0.1 3190959 chr3R 5897864 intron CG34113 - chr3R 7493344 intron alpha-Est10 - chr3R 9088823 intron pum - chr3R_5_7490001 chr3R_7490001 RAL-395 2358 chr3R 9095267 9095309 chr3R 9095380 9095422 22 113 10.0 7.5 8.8 2.2 155 chr3R 9095267 intron pum - chr3R 9095344 intron pum - chr3R 9095422 intron pum - chr3R_22_9095001 chr3R_9095001 RAL-395 2359 chr3R 9101816 9101869 chr3R 9101939 9101977 29 122 5.5 11.0 8.2 3.2 161 chr3R 9101816 intron pum - chr3R 9101896 intron pum - chr3R 9101977 intron pum - chr3R_29_9100001 chr3R_9100001 RAL-395 2360 chr3R 9108839 9108884 chr3R 9108941 9108986 23 102 8.0 3.5 5.8 3.4 147 chr3R 9108839 intron pum - chr3R 9108912 intron pum - chr3R 9108986 intron pum - chr3R_23_9105001 chr3R_9105001 RAL-395 2361 chr3R 9149445 9149457 chr3R 9149551 9149554 10 103 9.5 2.5 6.0 1.4 109 chr3R 9149445 intron pum - chr3R 9149500 intron pum - chr3R 9149554 intron pum - chr3R_10_9145001 chr3R_9145001 RAL-395 2362 chr3R 9192033 9192054 chr3R 9192144 9192165 10 111 12.5 8.0 10.2 0.9 132 chr3R 9192033 intron pum - chr3R 9192099 intron pum - chr3R 9192165 intron pum - chr3R_10_9190001 chr3R_9190001 RAL-395 2363 chr3R 9278771 9278788 chr3R 9284057 9284074 Rt1a 10 5286 10.5 14.5 12.5 0.7 5303 chr3R 9278771 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284074 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-395 2364 chr3R 9278789 9278811 chr3R 9284046 9284088 Rt1a 14 5283 7.0 11.0 9.0 1.4 5299 chr3R 9278789 intergenic not near genes chr3R 9281438 intergenic not near genes chr3R 9284088 intergenic not near genes chr3R_14_9280001 chr3R_9280001 RAL-395 2365 chr3R 9289131 9289189 chr3R 9289422 9289474 29 290 7.0 6.5 6.8 3.7 343 chr3R 9289131 intergenic not near genes chr3R 9289302 intergenic not near genes chr3R 9289474 intergenic not near genes chr3R_29_9285001 chr3R_9285001 RAL-395 2366 chr3R 9304505 9304551 chr3R 9311818 9311824 Stalker4 8 7308 11.0 5.0 8.0 0.9 7319 chr3R 9304505 intron CG8861 - chr3R 9308164 intron CG8861 - chr3R 9311824 intron CG8861 - chr3R_8_9305001 chr3R_9305001 RAL-395 2367 chr3R 9317255 9317307 chr3R 9317400 9317452 23 145 5.0 4.0 4.5 4.2 197 chr3R 9317255 intron CG8861 - chr3R 9317354 intron CG8861 - chr3R 9317452 intron CG8861 - chr3R_23_9315001 chr3R_9315001 RAL-395 2368 chr3R 9319555 9319602 chr3R 9320016 9320049 jockey 28 460 8.0 8.0 8.0 3.1 494 chr3R 9319555 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320049 intron CG8861 - chr3R_28_9315001 chr3R_9315001 RAL-395 2369 chr3R 9361808 9361842 chr3R 9362075 9362109 pogo 16 267 4.5 9.5 7.0 2.0 301 chr3R 9361808 3` UTR CG45050 + chr3R 9361958 3` UTR CG45050 + chr3R 9362109 3` UTR CG45050 + chr3R_16_9360001 chr3R_9360001 RAL-395 2370 chr3R 9379161 9379177 chr3R 9379269 9379285 11 108 0.0 24.0 12.0 0.8 124 chr3R 9379161 intron FER - chr3R 9379223 intron FER - chr3R 9379285 intron FER - chr3R_11_9375001 chr3R_9375001 RAL-395 2371 chr3R 9434668 9434717 chr3R 9434781 9434830 20 113 11.0 4.5 7.8 2.3 162 chr3R 9434668 intron ps + chr3R 9434749 intron ps + chr3R 9434830 intron ps + chr3R_20_9430001 chr3R_9430001 RAL-395 2372 chr3R 10073750 10073800 chr3R 10073885 10073935 23 135 6.0 4.5 5.2 3.7 185 chr3R 10073750 3` UTR nerfin-2 + chr3R 10073842 3` UTR CG5361 - chr3R 10073935 exon CG5361 - chr3R_23_10070001 chr3R_10070001 RAL-395 2373 chr3R 10104116 10104164 chr3R 10104218 10104266 25 102 7.5 10.0 8.8 2.6 150 chr3R 10104116 intron Fmr1 - chr3R 10104191 intron Fmr1 - chr3R 10104266 intron Fmr1 - chr3R_25_10100001 chr3R_10100001 RAL-395 2374 chr3R 10140407 10140463 chr3R 10140523 10140580 16 116 4.5 3.0 3.8 3.3 173 chr3R 10140407 3` UTR TAF1B - chr3R 10140494 3` UTR TAF1B - chr3R 10140580 3` UTR TAF1B - chr3R_16_10140001 chr3R_10140001 RAL-395 2375 chr3R 10167488 10167489 chr3R 10167546 10167570 4 85 8.0 5.5 6.8 0.5 82 chr3R 10167488 intron Best1 - chr3R 10167529 intron Best1 - chr3R 10167570 intron Best1 - chr3R_4_10165001 chr3R_10165001 RAL-395 2376 chr3R 10194606 10194655 chr3R 10194723 10194771 20 117 5.5 5.5 5.5 3.1 165 chr3R 10194606 intron Syn + chr3R 10194688 intron Syn + chr3R 10194771 intron Syn + chr3R_20_10190001 chr3R_10190001 RAL-395 2377 chr3R 10207284 10207292 chr3R 10207387 10207393 5 102 19.5 8.5 14.0 0.3 109 chr3R 10207284 intron,intron Syn +,Timp - chr3R 10207338 intron,intron Syn +,Timp - chr3R 10207393 intron,intron Syn +,Timp - chr3R_5_10205001 chr3R_10205001 RAL-395 2378 chr3R 10231768 10231814 chr3R 10237371 10237408 mdg3 14 5602 6.0 7.5 6.8 1.8 5640 chr3R 10231768 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237408 intron CG42795 + chr3R_14_10230001 chr3R_10230001 RAL-395 2379 chr3R 10255357 10255385 chr3R 10260823 10260850 I-element 10 5466 11.5 17.0 14.2 0.7 5493 chr3R 10255357 3` UTR Sirt6 - chr3R 10258104 intron Sirt6 - chr3R 10260850 exon Sirt6 - chr3R_10_10255001 chr3R_10255001 RAL-395 2380 chr3R 10268985 10269039 chr3R 10272113 10272167 26 3129 42.5 63.0 52.8 0.5 3182 chr3R 10268985 intron CG43143 + chr3R 10270576 intron CG43143 + chr3R 10272167 intron CG43143 + chr3R_26_10270001 chr3R_10270001 RAL-395 2381 chr3R 10401872 10401925 chr3R 10402088 10402140 34 215 5.5 9.0 7.2 4.1 268 chr3R 10401872 exon mthl11 + chr3R 10402006 intron mthl11 + chr3R 10402140 exon mthl11 + chr3R_34_10400001 chr3R_10400001 RAL-395 2382 chr3R 10430648 10430658 chr3R 10430763 10430773 6 115 17.0 4.5 10.8 0.5 125 chr3R 10430648 intergenic not near genes chr3R 10430710 intergenic not near genes chr3R 10430773 intergenic not near genes chr3R_6_10430001 chr3R_10430001 RAL-395 2383 chr3R 10430660 10430704 chr3R 10430762 10430819 25 114 8.5 4.5 6.5 3.3 159 chr3R 10430660 intergenic not near genes chr3R 10430740 intergenic not near genes chr3R 10430819 intergenic not near genes chr3R_25_10430001 chr3R_10430001 RAL-395 2384 chr3R 10456941 10456995 chr3R 10457205 10457241 29 263 5.0 7.5 6.2 4.0 300 chr3R 10456941 intergenic not near genes chr3R 10457091 intergenic not near genes chr3R 10457241 intergenic not near genes chr3R_29_10455001 chr3R_10455001 RAL-395 2385 chr3R 10596597 10596650 chr3R 10596699 10596748 37 101 6.0 6.5 6.2 5.1 151 chr3R 10596597 intron hth - chr3R 10596672 intron hth - chr3R 10596748 intron hth - chr3R_37_10595001 chr3R_10595001 RAL-395 2386 chr3R 10641571 10641623 chr3R 10641677 10641729 27 105 6.5 10.5 8.5 2.8 158 chr3R 10641571 5` UTR CR44018 + chr3R 10641650 5` UTR CR44018 + chr3R 10641729 5` UTR CR44018 + chr3R_27_10640001 chr3R_10640001 RAL-395 2387 chr3R 10651782 10651831 chr3R 10651907 10651956 20 125 9.0 7.5 8.2 2.2 174 chr3R 10651782 intergenic not near genes chr3R 10651869 intergenic not near genes chr3R 10651956 intergenic not near genes chr3R_20_10650001 chr3R_10650001 RAL-395 2388 chr3R 10719933 10719986 chr3R 10720035 10720092 27 106 11.0 5.5 8.2 2.9 159 chr3R 10719933 intergenic not near genes chr3R 10720012 intergenic not near genes chr3R 10720092 intergenic not near genes chr3R_27_10720001 chr3R_10720001 RAL-395 2389 chr3R 10727618 10727678 chr3R 10727724 10727784 40 105 7.0 7.0 7.0 5.0 166 chr3R 10727618 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727784 intergenic not near genes chr3R_40_10725001 chr3R_10725001 RAL-395 2390 chr3R 10732819 10732825 chr3R 10732930 10732936 6 111 20.5 15.5 18.0 0.3 117 chr3R 10732819 intergenic not near genes chr3R 10732878 intergenic not near genes chr3R 10732936 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-395 2391 chr3R 10732827 10732870 chr3R 10732928 10732981 31 108 8.5 14.5 11.5 2.5 154 chr3R 10732827 intergenic not near genes chr3R 10732904 intergenic not near genes chr3R 10732981 intergenic not near genes chr3R_31_10730001 chr3R_10730001 RAL-395 2392 chr3R 10733561 10733601 chr3R 10733719 10733759 14 158 5.5 7.0 6.2 1.9 198 chr3R 10733561 intergenic not near genes chr3R 10733660 intergenic not near genes chr3R 10733759 intergenic not near genes chr3R_14_10730001 chr3R_10730001 RAL-395 2393 chr3R 10785788 10785838 chr3R 10785893 10785943 23 105 8.5 10.5 9.5 2.2 155 chr3R 10785788 intron Rbp1 + chr3R 10785866 intron Rbp1 + chr3R 10785943 intron Rbp1 + chr3R_23_10785001 chr3R_10785001 RAL-395 2394 chr3R 10804149 10804196 chr3R 10811707 10811754 17.6 14 7558 3.0 11.0 7.0 1.8 7605 chr3R 10804149 intergenic CG14692 - chr3R 10807952 intergenic not near genes chr3R 10811754 3` UTR CG14693 - chr3R_14_10805001 chr3R_10805001 RAL-395 2395 chr3R 10827865 10827923 chr3R 10827979 10828036 19 114 8.0 5.5 6.8 2.4 171 chr3R 10827865 intron Cad86C + chr3R 10827950 intron Cad86C + chr3R 10828036 intron Cad86C + chr3R_19_10825001 chr3R_10825001 RAL-395 2396 chr3R 10868568 10868623 chr3R 10868671 10868727 27 103 4.0 9.0 6.5 3.6 159 chr3R 10868568 5` UTR SelR - chr3R 10868648 intergenic SelR -,Tsp86D + chr3R 10868727 5` UTR Tsp86D + chr3R_27_10865001 chr3R_10865001 RAL-395 2397 chr3R 10870845 10870894 chr3R 10870952 10871000 27 106 10.5 10.0 10.2 2.4 155 chr3R 10870845 intergenic Fdh -,Tsp86D + chr3R 10870922 3` UTR Fdh - chr3R 10871000 exon Fdh - chr3R_27_10870001 chr3R_10870001 RAL-395 2398 chr3R 10900436 10900474 chr3R 10900527 10900577 12 102 5.5 12.0 8.8 1.2 141 chr3R 10900436 intergenic not near genes chr3R 10900506 intergenic not near genes chr3R 10900577 intergenic not near genes chr3R_12_10900001 chr3R_10900001 RAL-395 2399 chr3R 10919659 10919718 chr3R 10919763 10919822 26 104 10.0 6.0 8.0 2.9 163 chr3R 10919659 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919822 intergenic not near genes chr3R_26_10915001 chr3R_10915001 RAL-395 2400 chr3R 10920025 10920062 chr3R 10920128 10920166 17 103 7.5 10.5 9.0 1.7 141 chr3R 10920025 intergenic not near genes chr3R 10920096 intergenic not near genes chr3R 10920166 intergenic not near genes chr3R_17_10920001 chr3R_10920001 RAL-395 2401 chr3R 10920063 10920070 chr3R 10920126 10920174 5 96 6.0 9.5 7.8 0.6 111 chr3R 10920063 intergenic not near genes chr3R 10920118 intergenic not near genes chr3R 10920174 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-395 2402 chr3R 10938973 10938997 chr3R 10939080 10939105 20 108 13.5 9.5 11.5 1.6 132 chr3R 10938973 intergenic not near genes chr3R 10939039 intergenic not near genes chr3R 10939105 intergenic not near genes chr3R_20_10935001 chr3R_10935001 RAL-395 2403 chr3R 10939000 10939025 chr3R 10939077 10939130 14 103 8.0 8.0 8.0 1.6 130 chr3R 10939000 intergenic not near genes chr3R 10939065 intergenic not near genes chr3R 10939130 intergenic not near genes chr3R_14_10935001 chr3R_10935001 RAL-395 2404 chr3R 10957841 10957885 chr3R 10963252 10963282 Rt1c 27 5409 8.5 5.5 7.0 3.4 5441 chr3R 10957841 intergenic not near genes chr3R 10960562 intergenic not near genes chr3R 10963282 intergenic not near genes chr3R_27_10960001 chr3R_10960001 RAL-395 2405 chr3R 10994260 10994310 chr3R 10994364 10994415 27 105 9.0 8.0 8.5 2.8 155 chr3R 10994260 intron CG34114 + chr3R 10994338 intron CG34114 + chr3R 10994415 intron CG34114 + chr3R_27_10990001 chr3R_10990001 RAL-395 2406 chr3R 11013877 11013935 chr3R 11013980 11014038 36 102 10.0 9.5 9.8 3.3 161 chr3R 11013877 intron CG34114 + chr3R 11013958 intron CG34114 + chr3R 11014038 intron CG34114 + chr3R_36_11010001 chr3R_11010001 RAL-395 2407 chr3R 11102302 11102339 chr3R 11102409 11102446 21 106 12.5 5.5 9.0 2.1 144 chr3R 11102302 intergenic not near genes chr3R 11102374 intergenic not near genes chr3R 11102446 intergenic not near genes chr3R_21_11100001 chr3R_11100001 RAL-395 2408 chr3R 11197961 11198008 chr3R 11198086 11198133 27 122 10.0 8.5 9.2 2.6 172 chr3R 11197961 intron cu + chr3R 11198047 intron cu + chr3R 11198133 intron cu + chr3R_27_11195001 chr3R_11195001 RAL-395 2409 chr3R 11242225 11242280 chr3R 11242340 11242392 35 113 5.5 10.0 7.8 4.0 167 chr3R 11242225 3` UTR CG17734 - chr3R 11242308 3` UTR CG17734 - chr3R 11242392 3` UTR CG17734 - chr3R_35_11240001 chr3R_11240001 RAL-395 2410 chr3R 11247219 11247228 chr3R 11247326 11247335 INE-1 6 107 14.5 5.0 9.8 0.6 116 chr3R 11247219 intergenic CG5214 +,CR43283 - chr3R 11247277 intergenic CR43283 -,CG5214 + chr3R 11247335 intergenic CR43283 -,CG5214 + chr3R_6_11245001 chr3R_11245001 RAL-395 2411 chr3R 11265909 11265921 chr3R 11266019 11266031 11 110 11.0 19.0 15.0 0.7 122 chr3R 11265909 intergenic not near genes chr3R 11265970 intergenic not near genes chr3R 11266031 intergenic not near genes chr3R_11_11265001 chr3R_11265001 RAL-395 2412 chr3R 11269422 11269470 chr3R 11269573 11269620 12 151 2.5 3.5 3.0 3.0 198 chr3R 11269422 3` UTR CR31386 - chr3R 11269521 3` UTR CR31386 - chr3R 11269620 3` UTR CR31386 - chr3R_12_11265001 chr3R_11265001 RAL-395 2413 chr3R 11307168 11307217 chr3R 11307281 11307330 33 113 12.5 12.0 12.2 2.5 162 chr3R 11307168 intergenic not near genes chr3R 11307249 intergenic not near genes chr3R 11307330 intergenic not near genes chr3R_33_11305001 chr3R_11305001 RAL-395 2414 chr3R 11311902 11311938 chr3R 11312016 11312056 5 117 33.5 38.0 35.8 0.1 154 chr3R 11311902 intergenic not near genes chr3R 11311979 intergenic not near genes chr3R 11312056 intergenic not near genes chr3R_5_11310001 chr3R_11310001 RAL-395 2415 chr3R 11325317 11325319 chr3R 11325438 11325440 4 121 25.0 11.5 18.2 0.2 123 chr3R 11325317 intergenic not near genes chr3R 11325378 intergenic not near genes chr3R 11325440 intergenic not near genes chr3R_4_11325001 chr3R_11325001 RAL-395 2416 chr3R 11325323 11325356 chr3R 11325437 11325477 18 120 14.0 11.5 12.8 1.3 154 chr3R 11325323 intergenic not near genes chr3R 11325400 intergenic not near genes chr3R 11325477 intergenic not near genes chr3R_18_11325001 chr3R_11325001 RAL-395 2417 chr3R 11379212 11379251 chr3R 11388393 11388432 roo 19 9181 11.5 9.5 10.5 1.7 9220 chr3R 11379212 intron pros + chr3R 11383822 intron pros + chr3R 11388432 intron pros + chr3R_19_11380001 chr3R_11380001 RAL-395 2418 chr3R 11483422 11483485 chr3R 11483533 11483588 22 107 5.5 9.0 7.2 2.7 166 chr3R 11483422 intergenic not near genes chr3R 11483505 intergenic not near genes chr3R 11483588 intergenic not near genes chr3R_22_11480001 chr3R_11480001 RAL-395 2419 chr3R 11640486 11640494 chr3R 11640607 11640615 6 121 12.5 7.0 9.8 0.6 129 chr3R 11640486 intron Csk - chr3R 11640550 intron Csk - chr3R 11640615 intron Csk - chr3R_6_11640001 chr3R_11640001 RAL-395 2420 chr3R 11640495 11640541 chr3R 11640603 11640662 21 120 6.0 6.5 6.2 2.9 167 chr3R 11640495 intron Csk - chr3R 11640578 intron Csk - chr3R 11640662 intron Csk - chr3R_21_11640001 chr3R_11640001 RAL-395 2421 chr3R 11694702 11694749 chr3R 11694821 11694868 25 119 9.0 7.0 8.0 2.8 166 chr3R 11694702 intergenic Fer3 - chr3R 11694785 intergenic Fer3 - chr3R 11694868 intergenic not near genes chr3R_25_11690001 chr3R_11690001 RAL-395 2422 chr3R 11710184 11710237 chr3R 11710288 11710341 31 103 4.5 12.0 8.2 3.4 157 chr3R 11710184 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710341 intergenic not near genes chr3R_31_11710001 chr3R_11710001 RAL-395 2423 chr3R 11734134 11734189 chr3R 11734279 11734334 42 143 7.0 10.5 8.8 4.3 200 chr3R 11734134 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734334 intergenic not near genes chr3R_42_11730001 chr3R_11730001 RAL-395 2424 chr3R 11841037 11841091 chr3R 11846254 11846308 BS 28 5217 9.5 6.5 8.0 3.1 5271 chr3R 11841037 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846308 intron CG6959 - chr3R_28_11840001 chr3R_11840001 RAL-395 2425 chr3R 11919287 11919335 chr3R 11919400 11919447 21 113 7.5 10.5 9.0 2.1 160 chr3R 11919287 intron Cad87A - chr3R 11919367 intron Cad87A - chr3R 11919447 intron Cad87A - chr3R_21_11915001 chr3R_11915001 RAL-395 2426 chr3R 11945360 11945406 chr3R 11945484 11945530 27 123 11.5 4.5 8.0 3.0 170 chr3R 11945360 intron Cad87A - chr3R 11945445 intron Cad87A - chr3R 11945530 intron Cad87A - chr3R_27_11945001 chr3R_11945001 RAL-395 2427 chr3R 11957830 11957869 chr3R 11958139 11958173 S-element 13 308 10.0 0.0 5.0 2.2 343 chr3R 11957830 intergenic not near genes chr3R 11958002 intergenic not near genes chr3R 11958173 intergenic not near genes chr3R_13_11955001 chr3R_11955001 RAL-395 2428 chr3R 12022858 12022916 chr3R 12025061 12025119 pogo 38 2203 8.0 6.0 7.0 4.8 2261 chr3R 12022858 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025119 intergenic not near genes chr3R_38_12020001 chr3R_12020001 RAL-395 2429 chr3R 12045152 12045172 chr3R 12045254 12045272 13 102 13.5 2.0 7.8 1.5 120 chr3R 12045152 intergenic not near genes chr3R 12045212 intergenic not near genes chr3R 12045272 intergenic not near genes chr3R_13_12045001 chr3R_12045001 RAL-395 2430 chr3R 12080838 12080897 chr3R 12080941 12080999 32 103 5.0 7.0 6.0 4.6 161 chr3R 12080838 intron CG14741 - chr3R 12080918 intron CG14741 - chr3R 12080999 intron CG14741 - chr3R_32_12080001 chr3R_12080001 RAL-395 2431 chr3R 12135479 12135535 chr3R 12135744 12135800 27 262 7.5 6.5 7.0 3.4 321 chr3R 12135479 intergenic not near genes chr3R 12135640 intergenic not near genes chr3R 12135800 intergenic not near genes chr3R_27_12135001 chr3R_12135001 RAL-395 2432 chr3R 12165841 12165896 chr3R 12165945 12166000 20 104 6.0 5.5 5.8 2.9 159 chr3R 12165841 intron Cpn - chr3R 12165920 intron Cpn - chr3R 12166000 intron Cpn - chr3R_20_12165001 chr3R_12165001 RAL-395 2433 chr3R 12214345 12214372 chr3R 12214462 12214489 16 116 5.0 16.0 10.5 1.4 144 chr3R 12214345 3` UTR CG4848 - chr3R 12214417 3` UTR CG4848 - chr3R 12214489 3` UTR CG4848 - chr3R_16_12210001 chr3R_12210001 RAL-395 2434 chr3R 12297627 12297641 chr3R 12297730 12297744 16 103 20.5 22.0 21.2 0.7 117 chr3R 12297627 intron svp + chr3R 12297686 intron svp + chr3R 12297744 intron svp + chr3R_16_12295001 chr3R_12295001 RAL-395 2435 chr3R 12306346 12306392 chr3R 12306465 12306512 39 119 4.5 7.5 6.0 5.6 166 chr3R 12306346 intergenic not near genes chr3R 12306429 intergenic not near genes chr3R 12306512 intergenic not near genes chr3R_39_12305001 chr3R_12305001 RAL-395 2436 chr3R 12307206 12307254 chr3R 12307315 12307363 24 109 8.0 7.0 7.5 2.8 157 chr3R 12307206 intergenic not near genes chr3R 12307284 intergenic not near genes chr3R 12307363 intergenic not near genes chr3R_24_12305001 chr3R_12305001 RAL-395 2437 chr3R 12365691 12365749 chr3R 12365796 12365855 30 103 6.0 6.0 6.0 4.3 164 chr3R 12365691 5` UTR GstD10 - chr3R 12365773 intergenic GstD10 -,GstD9 - chr3R 12365855 intergenic GstD10 -,GstD9 - chr3R_30_12365001 chr3R_12365001 RAL-395 2438 chr3R 12374588 12374597 chr3R 12376277 12376282 8 1688 17.5 21.0 19.2 0.4 1694 chr3R 12374588 exon GstD4 + chr3R 12375435 intergenic GstD5 + chr3R 12376282 exon GstD5 + chr3R_8_12375001 chr3R_12375001 RAL-395 2439 chr3R 12376368 12376419 chr3R 12376480 12376531 19 112 4.0 3.0 3.5 4.2 163 chr3R 12376368 exon GstD5 + chr3R 12376450 3` UTR GstD5 + chr3R 12376531 3` UTR GstD5 + chr3R_19_12375001 chr3R_12375001 RAL-395 2440 chr3R 12392866 12392901 chr3R 12392992 12393027 22 125 6.5 18.5 12.5 1.6 161 chr3R 12392866 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392946 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393027 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_22_12390001 chr3R_12390001 RAL-395 2441 chr3R 12546431 12546480 chr3R 12546540 12546589 23 109 12.0 8.0 10.0 2.1 158 chr3R 12546431 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546589 intron Octbeta3R - chr3R_23_12545001 chr3R_12545001 RAL-395 2442 chr3R 12602586 12602642 chr3R 12602695 12602751 37 110 66.5 68.5 67.5 0.5 165 chr3R 12602586 intergenic not near genes chr3R 12602668 intergenic not near genes chr3R 12602751 intergenic not near genes chr3R_37_12600001 chr3R_12600001 RAL-395 2443 chr3R 12619863 12619912 chr3R 12619972 12620020 18 108 7.5 8.5 8.0 2.0 157 chr3R 12619863 intergenic CR44942 - chr3R 12619942 intergenic not near genes chr3R 12620020 intergenic not near genes chr3R_18_12615001 chr3R_12615001 RAL-395 2444 chr3R 12739019 12739065 chr3R 12739121 12739167 20 102 4.5 10.5 7.5 2.4 148 chr3R 12739019 intergenic not near genes chr3R 12739093 intergenic not near genes chr3R 12739167 intergenic CG5724 + chr3R_20_12735001 chr3R_12735001 RAL-395 2445 chr3R 12787928 12787955 chr3R 12788036 12788064 16 109 9.0 13.0 11.0 1.3 136 chr3R 12787928 intergenic not near genes chr3R 12787996 intergenic not near genes chr3R 12788064 intergenic not near genes chr3R_16_12785001 chr3R_12785001 RAL-395 2446 chr3R 12831161 12831198 chr3R 12831273 12831310 26 112 16.0 9.5 12.8 1.9 149 chr3R 12831161 intergenic not near genes chr3R 12831236 intergenic not near genes chr3R 12831310 intergenic not near genes chr3R_26_12830001 chr3R_12830001 RAL-395 2447 chr3R 12845924 12845966 chr3R 12846080 12846123 23 157 5.5 8.5 7.0 2.9 199 chr3R 12845924 intron beat-Va - chr3R 12846024 intron beat-Va - chr3R 12846123 intron beat-Va - chr3R_23_12845001 chr3R_12845001 RAL-395 2448 chr3R 12894596 12894626 chr3R 12894718 12894765 7 136 0.0 0.0 0.0 7.0 169 chr3R 12894596 intergenic not near genes chr3R 12894680 intergenic not near genes chr3R 12894765 intergenic not near genes chr3R_7_12890001 chr3R_12890001 RAL-395 2449 chr3R 12920134 12920182 chr3R 12925363 12925411 copia 28 5229 6.0 14.5 10.2 2.5 5277 chr3R 12920134 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925411 intron beat-Vb + chr3R_28_12920001 chr3R_12920001 RAL-395 2450 chr3R 13059935 13059976 chr3R 13060156 13060197 18 220 4.5 7.5 6.0 2.6 262 chr3R 13059935 intron sim + chr3R 13060066 intron sim + chr3R 13060197 intron sim + chr3R_18_13060001 chr3R_13060001 RAL-395 2451 chr3R 13064742 13064791 chr3R 13064866 13064914 6 124 0.0 0.0 0.0 6.0 172 chr3R 13064742 intron sim + chr3R 13064828 intron sim + chr3R 13064914 intron sim + chr3R_6_13060001 chr3R_13060001 RAL-395 2452 chr3R 13135811 13135831 chr3R 13138002 13138022 pogo 7 2191 13.0 4.5 8.8 0.7 2211 chr3R 13135811 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136916 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138022 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-395 2453 chr3R 13143013 13143065 chr3R 13148615 13148667 mdg3 34 5601 9.0 7.0 8.0 3.8 5654 chr3R 13143013 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148667 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_34_13145001 chr3R_13145001 RAL-395 2454 chr3R 13169165 13169211 chr3R 13173547 13173593 23 4382 46.5 40.0 43.2 0.5 4428 chr3R 13169165 intergenic not near genes chr3R 13171379 intergenic not near genes chr3R 13173593 intergenic not near genes chr3R_23_13170001 chr3R_13170001 RAL-395 2455 chr3R 13189981 13190035 chr3R 13190136 13190190 35 154 10.0 6.5 8.2 3.8 209 chr3R 13189981 intergenic CG14380 + chr3R 13190086 intergenic not near genes chr3R 13190190 intergenic not near genes chr3R_35_13190001 chr3R_13190001 RAL-395 2456 chr3R 13195926 13195982 chr3R 13196047 13196102 29 120 9.5 2.5 6.0 4.1 176 chr3R 13195926 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196102 intergenic not near genes chr3R_29_13195001 chr3R_13195001 RAL-395 2457 chr3R 13274192 13274243 chr3R 13274297 13274348 30 103 11.5 11.5 11.5 2.4 156 chr3R 13274192 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274348 intergenic not near genes chr3R_30_13270001 chr3R_13270001 RAL-395 2458 chr3R 13276966 13277018 chr3R 13277081 13277133 30 115 10.0 7.0 8.5 3.2 167 chr3R 13276966 intergenic not near genes chr3R 13277050 intergenic not near genes chr3R 13277133 intergenic not near genes chr3R_30_13275001 chr3R_13275001 RAL-395 2459 chr3R 13314072 13314121 chr3R 13318884 13318935 Doc 12 4812 8.0 9.5 8.8 1.2 4863 chr3R 13314072 intergenic not near genes chr3R 13316504 intergenic not near genes chr3R 13318935 intergenic CG45080 - chr3R_12_13315001 chr3R_13315001 RAL-395 2460 chr3R 13348981 13349033 chr3R 13349083 13349134 26 102 7.5 7.5 7.5 3.1 153 chr3R 13348981 intergenic not near genes chr3R 13349058 intergenic not near genes chr3R 13349134 intergenic not near genes chr3R_26_13345001 chr3R_13345001 RAL-395 2461 chr3R 13376253 13376300 chr3R 13376368 13376415 14 114 5.5 10.5 8.0 1.6 162 chr3R 13376253 intron CG9813 - chr3R 13376334 intron CG9813 - chr3R 13376415 intron CG9813 - chr3R_14_13375001 chr3R_13375001 RAL-395 2462 chr3R 13380696 13380752 chr3R 13380810 13380866 39 113 6.5 7.5 7.0 4.9 170 chr3R 13380696 exon CG8870 + chr3R 13380781 exon CG8870 + chr3R 13380866 intron CG8870 + chr3R_39_13380001 chr3R_13380001 RAL-395 2463 chr3R 13418781 13418804 chr3R 13418893 13418914 8 112 8.0 9.0 8.5 0.8 133 chr3R 13418781 intergenic not near genes chr3R 13418848 intergenic not near genes chr3R 13418914 intergenic not near genes chr3R_8_13415001 chr3R_13415001 RAL-395 2464 chr3R 13435364 13435421 chr3R 13435565 13435622 26 200 7.5 3.5 5.5 4.0 258 chr3R 13435364 intergenic yrt - chr3R 13435493 intergenic not near genes chr3R 13435622 intergenic not near genes chr3R_26_13435001 chr3R_13435001 RAL-395 2465 chr3R 13517205 13517257 chr3R 13520048 13520100 jockey 11 2843 5.5 6.5 6.0 1.6 2895 chr3R 13517205 intergenic not near genes chr3R 13518652 intergenic not near genes chr3R 13520100 intergenic not near genes chr3R_11_13515001 chr3R_13515001 RAL-395 2466 chr3R 13555661 13555680 chr3R 13555763 13555776 14 103 12.0 0.0 6.0 2.0 115 chr3R 13555661 intergenic not near genes chr3R 13555718 intergenic not near genes chr3R 13555776 intergenic not near genes chr3R_14_13555001 chr3R_13555001 RAL-395 2467 chr3R 13558939 13558980 chr3R 13559175 13559216 19 236 5.0 7.5 6.2 2.6 277 chr3R 13558939 intergenic not near genes chr3R 13559078 intergenic not near genes chr3R 13559216 intergenic not near genes chr3R_19_13555001 chr3R_13555001 RAL-395 2468 chr3R 13563323 13563358 chr3R 13563426 13563461 21 103 13.5 14.0 13.8 1.4 138 chr3R 13563323 intergenic not near genes chr3R 13563392 intergenic not near genes chr3R 13563461 intergenic not near genes chr3R_21_13560001 chr3R_13560001 RAL-395 2469 chr3R 13580816 13580831 chr3R 13580925 13580940 9 109 12.5 15.5 14.0 0.6 124 chr3R 13580816 intergenic not near genes chr3R 13580878 intergenic not near genes chr3R 13580940 intergenic not near genes chr3R_9_13580001 chr3R_13580001 RAL-395 2470 chr3R 13603028 13603325 chr3R 13603145 13603443 35 117 10.5 12.0 11.2 2.9 415 chr3R 13603028 intergenic not near genes chr3R 13603236 intergenic not near genes chr3R 13603443 intergenic not near genes chr3R_35_13600001 chr3R_13600001 RAL-395 2471 chr3R 13603330 13603370 chr3R 13603448 13603488 15 118 4.0 11.5 7.8 1.7 158 chr3R 13603330 intergenic not near genes chr3R 13603409 intergenic not near genes chr3R 13603488 intergenic not near genes chr3R_15_13600001 chr3R_13600001 RAL-395 2472 chr3R 13604033 13604091 chr3R 13604294 13604352 29 259 4.0 6.5 5.2 4.7 319 chr3R 13604033 intergenic not near genes chr3R 13604192 intergenic not near genes chr3R 13604352 intergenic not near genes chr3R_29_13600001 chr3R_13600001 RAL-395 2473 chr3R 13606693 13606731 chr3R 13606857 13606904 8 168 6.5 6.5 6.5 1.1 211 chr3R 13606693 intergenic CG9759 - chr3R 13606798 intergenic CG9759 - chr3R 13606904 intergenic CG9759 - chr3R_8_13605001 chr3R_13605001 RAL-395 2474 chr3R 13625675 13625720 chr3R 13625782 13625827 8 107 4.5 8.5 6.5 1.1 152 chr3R 13625675 intergenic not near genes chr3R 13625751 intergenic not near genes chr3R 13625827 intergenic not near genes chr3R_8_13625001 chr3R_13625001 RAL-395 2475 chr3R 13673159 13673213 chr3R 13673582 13673636 29 422 10.5 7.5 9.0 2.9 477 chr3R 13673159 intron Task6 - chr3R 13673398 intron Task6 - chr3R 13673636 intron Task6 - chr3R_29_13670001 chr3R_13670001 RAL-395 2476 chr3R 13693028 13693028 chr3R 21907534 21907536 9 8214507 43.0 35.0 39.0 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-395 2477 chr3R 13712594 13712651 chr3R 13712717 13712773 21 121 7.0 6.0 6.5 2.8 179 chr3R 13712594 3` UTR CR34044 - chr3R 13712684 3` UTR CR34044 - chr3R 13712773 3` UTR CR34044 - chr3R_21_13710001 chr3R_13710001 RAL-395 2478 chr3R 13743246 13743286 chr3R 13743350 13743384 17 102 7.5 10.5 9.0 1.7 138 chr3R 13743246 intron CG34383 + chr3R 13743315 intron CG34383 + chr3R 13743384 intron CG34383 + chr3R_17_13740001 chr3R_13740001 RAL-395 2479 chr3R 13844965 13844996 chr3R 13845068 13845099 17 102 9.5 16.0 12.8 1.2 134 chr3R 13844965 intergenic not near genes chr3R 13845032 intergenic not near genes chr3R 13845099 intergenic not near genes chr3R_17_13845001 chr3R_13845001 RAL-395 2480 chr3R 13863664 13863711 chr3R 13863777 13863825 22 114 10.5 13.5 12.0 1.7 161 chr3R 13863664 intergenic not near genes chr3R 13863744 intergenic not near genes chr3R 13863825 intergenic not near genes chr3R_22_13860001 chr3R_13860001 RAL-395 2481 chr3R 14021621 14021680 chr3R 14023464 14023523 S-element 14 1843 4.0 7.5 5.8 2.1 1902 chr3R 14021621 intron rdx - chr3R 14022572 intron rdx - chr3R 14023523 intron rdx - chr3R_14_14020001 chr3R_14020001 RAL-395 2482 chr3R 14037558 14037570 chr3R 14037665 14037677 6 107 14.0 7.0 10.5 0.5 119 chr3R 14037558 intergenic not near genes chr3R 14037618 intergenic not near genes chr3R 14037677 intergenic not near genes chr3R_6_14035001 chr3R_14035001 RAL-395 2483 chr3R 14058103 14058151 chr3R 14058249 14058296 15 146 9.0 7.5 8.2 1.6 193 chr3R 14058103 5` UTR foxo + chr3R 14058200 intron foxo + chr3R 14058296 intron foxo + chr3R_15_14055001 chr3R_14055001 RAL-395 2484 chr3R 14061345 14061369 chr3R 14061447 14061471 13 103 14.0 17.5 15.8 0.8 126 chr3R 14061345 intron foxo + chr3R 14061408 intron foxo + chr3R 14061471 intron foxo + chr3R_13_14060001 chr3R_14060001 RAL-395 2485 chr3R 14075309 14075383 chr3R 14075417 14075486 15 106 0.0 0.0 0.0 15.0 177 chr3R 14075309 intron foxo + chr3R 14075398 intron foxo + chr3R 14075486 intron foxo + chr3R_15_14075001 chr3R_14075001 RAL-395 2486 chr3R 14109068 14109114 chr3R 14109175 14109199 16 106 2.5 8.0 5.2 2.6 131 chr3R 14109068 intergenic CR44237 -,Or88a + chr3R 14109134 intergenic CR44237 -,Or88a + chr3R 14109199 intergenic CR44237 -,Or88a + chr3R_16_14105001 chr3R_14105001 RAL-395 2487 chr3R 14166679 14166701 chr3R 14167350 14167371 15 670 9.0 22.5 15.8 0.9 692 chr3R 14166679 3` UTR Dop1R1 - chr3R 14167025 3` UTR Dop1R1 - chr3R 14167371 3` UTR Dop1R1 - chr3R_15_14165001 chr3R_14165001 RAL-395 2488 chr3R 14180788 14180844 chr3R 14185578 14185635 F-element 18 4791 7.0 3.0 5.0 3.0 4847 chr3R 14180788 intron Dop1R1 - chr3R 14183212 intron Dop1R1 - chr3R 14185635 intron Dop1R1 - chr3R_18_14180001 chr3R_14180001 RAL-395 2489 chr3R 14194408 14194457 chr3R 14203577 14203631 roo 26 9175 12.0 12.0 12.0 2.0 9223 chr3R 14194408 intron Dop1R1 - chr3R 14199020 intron Dop1R1 - chr3R 14203631 intron Dop1R1 - chr3R_26_14195001 chr3R_14195001 RAL-395 2490 chr3R 14246368 14246418 chr3R 14247890 14247939 jockey 25 1521 8.0 6.5 7.2 3.0 1571 chr3R 14246368 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247939 intergenic not near genes chr3R_25_14245001 chr3R_14245001 RAL-395 2491 chr3R 14258139 14258216 chr3R 14258259 14258322 19 110 2.0 10.0 6.0 2.7 183 chr3R 14258139 intron Aats-met - chr3R 14258230 intron Aats-met - chr3R 14258322 intron Aats-met - chr3R_19_14255001 chr3R_14255001 RAL-395 2492 chr3R 14294010 14294065 chr3R 14294113 14294169 24 104 6.0 4.0 5.0 4.0 159 chr3R 14294010 intron CG12207 + chr3R 14294090 intron CG12207 + chr3R 14294169 intron CG12207 + chr3R_24_14290001 chr3R_14290001 RAL-395 2493 chr3R 14327666 14327726 chr3R 14327774 14327834 40 107 8.0 4.0 6.0 5.7 168 chr3R 14327666 3` UTR CG3321 + chr3R 14327750 intergenic CG3321 +,spn-B + chr3R 14327834 intergenic CG3321 +,spn-B + chr3R_40_14325001 chr3R_14325001 RAL-395 2494 chr3R 14365714 14365758 chr3R 14365827 14365870 14 114 8.5 7.0 7.8 1.6 156 chr3R 14365714 intron NK7.1 - chr3R 14365792 intron NK7.1 - chr3R 14365870 intron NK7.1 - chr3R_14_14365001 chr3R_14365001 RAL-395 2495 chr3R 14440707 14440752 chr3R 14440809 14440854 19 102 4.5 6.0 5.2 3.1 147 chr3R 14440707 intron cv-c - chr3R 14440780 intron cv-c - chr3R 14440854 intron cv-c - chr3R_19_14440001 chr3R_14440001 RAL-395 2496 chr3R 14497380 14497428 chr3R 14497487 14497535 29 107 11.0 9.0 10.0 2.6 155 chr3R 14497380 intron CR44177 + chr3R 14497458 intron CR44177 + chr3R 14497535 intron CR44177 + chr3R_29_14495001 chr3R_14495001 RAL-395 2497 chr3R 14527375 14527413 chr3R 14527478 14527516 24 103 9.5 7.5 8.5 2.5 141 chr3R 14527375 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527516 intron Pde6 - chr3R_24_14525001 chr3R_14525001 RAL-395 2498 chr3R 14608443 14608477 chr3R 14608561 14608595 17 118 2.5 6.0 4.2 3.3 152 chr3R 14608443 intergenic stumps + chr3R 14608519 intergenic stumps + chr3R 14608595 intergenic not near genes chr3R_17_14605001 chr3R_14605001 RAL-395 2499 chr3R 14704362 14704405 chr3R 14704465 14704508 15 103 9.5 8.5 9.0 1.5 146 chr3R 14704362 intron kibra - chr3R 14704435 intron kibra - chr3R 14704508 intron kibra - chr3R_15_14700001 chr3R_14700001 RAL-395 2500 chr3R 14706918 14706925 chr3R 14707033 14707040 6 115 7.0 21.0 14.0 0.4 122 chr3R 14706918 intron kibra - chr3R 14706979 intron kibra - chr3R 14707040 intron kibra - chr3R_6_14705001 chr3R_14705001 RAL-395 2501 chr3R 14707941 14707995 chr3R 14708061 14708114 37 119 10.5 6.5 8.5 3.9 173 chr3R 14707941 intron kibra - chr3R 14708028 intron kibra - chr3R 14708114 intron kibra - chr3R_37_14705001 chr3R_14705001 RAL-395 2502 chr3R 14779043 14779096 chr3R 14779150 14779202 27 105 3.0 16.5 9.8 2.5 159 chr3R 14779043 intron jvl + chr3R 14779122 intron jvl + chr3R 14779202 intron jvl + chr3R_27_14775001 chr3R_14775001 RAL-395 2503 chr3R 14821589 14821644 chr3R 14821764 14821819 29 175 6.5 9.5 8.0 3.2 230 chr3R 14821589 intron btsz - chr3R 14821704 intron btsz - chr3R 14821819 intron btsz - chr3R_29_14820001 chr3R_14820001 RAL-395 2504 chr3R 14842540 14842597 chr3R 14842650 14842695 32 108 7.0 7.0 7.0 4.0 155 chr3R 14842540 intron btsz - chr3R 14842618 intron btsz - chr3R 14842695 intron btsz - chr3R_32_14840001 chr3R_14840001 RAL-395 2505 chr3R 14898455 14898502 chr3R 14898601 14898648 12 146 2.0 8.5 5.2 1.9 193 chr3R 14898455 intergenic Nup93-2 -,CG3817 + chr3R 14898552 intergenic Nup93-2 -,CG3817 + chr3R 14898648 intergenic CG3817 +,Nup93-2 - chr3R_12_14895001 chr3R_14895001 RAL-395 2506 chr3R 14923686 14923743 chr3R 14923788 14923846 19 102 5.5 6.5 6.0 2.7 160 chr3R 14923686 3` UTR CR45598 - chr3R 14923766 intergenic CR45598 - chr3R 14923846 intergenic CR45598 - chr3R_19_14920001 chr3R_14920001 RAL-395 2507 chr3R 14944874 14944895 chr3R 14944981 14945002 7 107 12.5 10.5 11.5 0.6 128 chr3R 14944874 intergenic not near genes chr3R 14944938 intergenic not near genes chr3R 14945002 intergenic not near genes chr3R_7_14940001 chr3R_14940001 RAL-395 2508 chr3R 14952177 14952226 chr3R 14952353 14952402 23 176 8.0 12.5 10.2 2.1 225 chr3R 14952177 intergenic not near genes chr3R 14952290 intergenic not near genes chr3R 14952402 intergenic not near genes chr3R_23_14950001 chr3R_14950001 RAL-395 2509 chr3R 15004639 15004661 chr3R 15004749 15004771 15 109 23.5 13.0 18.2 0.8 132 chr3R 15004639 3` UTR CR45599 - chr3R 15004705 3` UTR CR45599 - chr3R 15004771 3` UTR CR45599 - chr3R_15_15000001 chr3R_15000001 RAL-395 2510 chr3R 15004662 15004689 chr3R 15004748 15004799 11 108 12.5 13.0 12.8 0.8 137 chr3R 15004662 3` UTR CR45599 - chr3R 15004730 3` UTR CR45599 - chr3R 15004799 3` UTR CR45599 - chr3R_11_15000001 chr3R_15000001 RAL-395 2511 chr3R 15041408 15041454 chr3R 15045202 15045248 Doc 8 3793 0.5 5.0 2.8 2.1 3840 chr3R 15041408 intergenic not near genes chr3R 15043328 intergenic not near genes chr3R 15045248 intergenic not near genes chr3R_8_15040001 chr3R_15040001 RAL-395 2512 chr3R 15059253 15059480 chr3R 15059473 15059593 BS 22 203 0.0 0.0 0.0 22.0 340 chr3R 15059253 intron dpr9 - chr3R 15059423 intron dpr9 - chr3R 15059593 intron dpr9 - chr3R_22_15055001 chr3R_15055001 RAL-395 2513 chr3R 15061011 15061035 chr3R 15061118 15061142 8 107 14.5 6.5 10.5 0.7 131 chr3R 15061011 intron dpr9 - chr3R 15061076 intron dpr9 - chr3R 15061142 intron dpr9 - chr3R_8_15060001 chr3R_15060001 RAL-395 2514 chr3R 15075868 15075895 chr3R 15075979 15076005 11 111 12.5 0.0 6.2 1.5 137 chr3R 15075868 intron dpr9 - chr3R 15075936 intron dpr9 - chr3R 15076005 intron dpr9 - chr3R_11_15075001 chr3R_15075001 RAL-395 2515 chr3R 15079785 15079819 chr3R 15080052 15080086 pogo 21 266 8.5 0.5 4.5 3.8 301 chr3R 15079785 3` UTR CG6966 - chr3R 15079936 3` UTR CG6966 - chr3R 15080086 3` UTR CG6966 - chr3R_21_15075001 chr3R_15075001 RAL-395 2516 chr3R 15088071 15088103 chr3R 15088195 15088227 6 124 7.0 7.5 7.2 0.7 156 chr3R 15088071 intron CG6966 - chr3R 15088149 intron CG6966 - chr3R 15088227 intron CG6966 - chr3R_6_15085001 chr3R_15085001 RAL-395 2517 chr3R 15102485 15102529 chr3R 15109769 15109809 412 17 7283 2.5 5.5 4.0 3.4 7324 chr3R 15102485 intron CG42788 - chr3R 15106147 intron CG42788 - chr3R 15109809 intron CG42788 - chr3R_17_15105001 chr3R_15105001 RAL-395 2518 chr3R 15114887 15114928 chr3R 15114990 15115026 26 102 6.5 8.5 7.5 3.1 139 chr3R 15114887 intron CG42788 - chr3R 15114956 intron CG42788 - chr3R 15115026 intron CG42788 - chr3R_26_15110001 chr3R_15110001 RAL-395 2519 chr3R 15127753 15127808 chr3R 15127859 15127914 16 106 3.0 5.0 4.0 3.2 161 chr3R 15127753 intron CG42788 - chr3R 15127834 intron CG42788 - chr3R 15127914 intron CG42788 - chr3R_16_15125001 chr3R_15125001 RAL-395 2520 chr3R 15132040 15132069 chr3R 15135126 15135155 Juan 12 3086 17.5 14.5 16.0 0.7 3115 chr3R 15132040 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135155 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 RAL-395 2521 chr3R 15143897 15143956 chr3R 15144106 15144165 25 209 6.0 5.0 5.5 3.8 268 chr3R 15143897 intron GlyS - chr3R 15144031 intron GlyS - chr3R 15144165 intron GlyS - chr3R_25_15140001 chr3R_15140001 RAL-395 2522 chr3R 15159180 15159231 chr3R 15159602 15159653 23 422 5.0 9.0 7.0 2.9 473 chr3R 15159180 intron Gyc88E + chr3R 15159416 intron Gyc88E + chr3R 15159653 intron Gyc88E + chr3R_23_15155001 chr3R_15155001 RAL-395 2523 chr3R 15162522 15162547 chr3R 15167316 15167341 F-element 13 4793 16.0 6.5 11.2 1.1 4819 chr3R 15162522 intron Gyc88E + chr3R 15164932 intron Gyc88E + chr3R 15167341 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-395 2524 chr3R 15180879 15180900 chr3R 15180990 15181012 10 112 10.5 0.0 5.2 1.6 133 chr3R 15180879 intron Gyc88E + chr3R 15180946 intron Gyc88E + chr3R 15181012 intron Gyc88E + chr3R_10_15180001 chr3R_15180001 RAL-395 2525 chr3R 15286987 15286988 chr3R 21907534 21907534 8 6620547 31.0 35.0 33.0 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 RAL-395 2526 chr3R 15320365 15320418 chr3R 15320634 15320687 25 269 7.0 7.5 7.2 3.0 322 chr3R 15320365 intergenic CG44040 +,CG6276 -,ear + chr3R 15320526 exon CG44040 + chr3R 15320687 3` UTR CG44040 + chr3R_25_15320001 chr3R_15320001 RAL-395 2527 chr3R 15406120 15406170 chr3R 15406227 15406276 20 107 11.5 4.0 7.8 2.3 156 chr3R 15406120 intron CG6125 - chr3R 15406198 intron CG6125 - chr3R 15406276 intron CG6125 - chr3R_20_15405001 chr3R_15405001 RAL-395 2528 chr3R 15416475 15416481 chr3R 15416588 15416594 6 113 10.0 17.0 13.5 0.4 119 chr3R 15416475 3` UTR Atx2 + chr3R 15416534 3` UTR Atx2 + chr3R 15416594 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-395 2529 chr3R 15445889 15445898 chr3R 15446000 15446009 6 111 10.0 1.0 5.5 0.9 120 chr3R 15445889 exon AdamTS-A - chr3R 15445949 intron AdamTS-A - chr3R 15446009 intron AdamTS-A - chr3R_6_15445001 chr3R_15445001 RAL-395 2530 chr3R 15499400 15499459 chr3R 15499519 15499578 41 118 5.5 7.5 6.5 5.5 178 chr3R 15499400 intergenic not near genes chr3R 15499489 intergenic not near genes chr3R 15499578 intergenic not near genes chr3R_41_15495001 chr3R_15495001 RAL-395 2531 chr3R 15592864 15592917 chr3R 15592974 15593027 26 109 8.0 5.0 6.5 3.5 163 chr3R 15592864 intergenic not near genes chr3R 15592946 intergenic not near genes chr3R 15593027 intergenic not near genes chr3R_26_15590001 chr3R_15590001 RAL-395 2532 chr3R 15594654 15594670 chr3R 15594762 15594779 9 109 0.0 14.5 7.2 1.1 125 chr3R 15594654 intergenic not near genes chr3R 15594716 intergenic not near genes chr3R 15594779 intergenic not near genes chr3R_9_15590001 chr3R_15590001 RAL-395 2533 chr3R 15601144 15601195 chr3R 15608692 15608743 412 36 7547 10.5 9.5 10.0 3.3 7599 chr3R 15601144 intergenic not near genes chr3R 15604944 intergenic not near genes chr3R 15608743 intergenic not near genes chr3R_36_15600001 chr3R_15600001 RAL-395 2534 chr3R 15618706 15618759 chr3R 15626206 15626259 blood 34 7500 7.0 16.5 11.8 2.7 7553 chr3R 15618706 intergenic not near genes chr3R 15622482 intergenic not near genes chr3R 15626259 intergenic not near genes chr3R_34_15620001 chr3R_15620001 RAL-395 2535 chr3R 15635183 15635238 chr3R 15635329 15635376 17 144 0.0 6.0 3.0 4.2 193 chr3R 15635183 intergenic CG43335 + chr3R 15635280 intergenic CG43335 + chr3R 15635376 intergenic CG43335 + chr3R_17_15635001 chr3R_15635001 RAL-395 2536 chr3R 15646778 15646799 chr3R 15646886 15646908 15 108 5.5 15.5 10.5 1.3 130 chr3R 15646778 intergenic not near genes chr3R 15646843 intergenic not near genes chr3R 15646908 intergenic not near genes chr3R_15_15645001 chr3R_15645001 RAL-395 2537 chr3R 15691156 15691328 chr3R 15691287 15691441 43 121 0.5 0.5 0.5 28.7 285 chr3R 15691156 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691441 intergenic not near genes chr3R_43_15690001 chr3R_15690001 RAL-395 2538 chr3R 15734150 15734193 chr3R 15734267 15734310 15 117 9.0 9.5 9.2 1.5 160 chr3R 15734150 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734310 intergenic not near genes chr3R_15_15730001 chr3R_15730001 RAL-395 2539 chr3R 15735217 15735236 chr3R 15739963 15739982 F-element 4 4746 6.0 6.5 6.2 0.6 4765 chr3R 15735217 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739982 intergenic not near genes chr3R_4_15735001 chr3R_15735001 RAL-395 2540 chr3R 15811480 15811531 chr3R 15811747 15811798 33 266 10.0 7.0 8.5 3.5 318 chr3R 15811480 intron alpha-Man-IIb + chr3R 15811639 intron alpha-Man-IIb + chr3R 15811798 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_33_15810001 chr3R_15810001 RAL-395 2541 chr3R 15813308 15813323 chr3R 15813419 15813433 12 111 21.5 6.0 13.8 0.8 125 chr3R 15813308 intron alpha-Man-IIb + chr3R 15813370 intron alpha-Man-IIb + chr3R 15813433 intron alpha-Man-IIb + chr3R_12_15810001 chr3R_15810001 RAL-395 2542 chr3R 15813324 15813358 chr3R 15813416 15813465 12 109 11.5 5.0 8.2 1.3 141 chr3R 15813324 intron alpha-Man-IIb + chr3R 15813394 intron alpha-Man-IIb + chr3R 15813465 intron alpha-Man-IIb + chr3R_12_15810001 chr3R_15810001 RAL-395 2543 chr3R 15868913 15868935 chr3R 15869019 15869040 9 106 9.0 0.0 4.5 1.6 127 chr3R 15868913 intron CG31183 - chr3R 15868976 intron CG31183 - chr3R 15869040 intron CG31183 - chr3R_9_15865001 chr3R_15865001 RAL-395 2544 chr3R 15878577 15878636 chr3R 15878682 15878742 36 105 7.0 9.5 8.2 3.9 165 chr3R 15878577 intergenic not near genes chr3R 15878660 intergenic not near genes chr3R 15878742 intergenic not near genes chr3R_36_15875001 chr3R_15875001 RAL-395 2545 chr3R 15891640 15891687 chr3R 15892058 15892105 22 418 4.5 6.0 5.2 3.5 465 chr3R 15891640 intron CG14877 - chr3R 15891872 intron CG14877 - chr3R 15892105 intron CG14877 - chr3R_22_15890001 chr3R_15890001 RAL-395 2546 chr3R 15937395 15937448 chr3R 15937508 15937561 30 111 9.5 7.0 8.2 3.3 166 chr3R 15937395 intron Sap47 + chr3R 15937478 intron Sap47 + chr3R 15937561 intron Sap47 + chr3R_30_15935001 chr3R_15935001 RAL-395 2547 chr3R 15950137 15950188 chr3R 15950241 15950292 31 103 6.5 11.5 9.0 3.1 155 chr3R 15950137 intron Sap47 + chr3R 15950214 intron,3` UTR Sap47 +,CG31088 - chr3R 15950292 intron,exon Sap47 +,CG31088 - chr3R_31_15950001 chr3R_15950001 RAL-395 2548 chr3R 16033385 16033439 chr3R 16033492 16033546 28 107 4.0 5.0 4.5 5.1 161 chr3R 16033385 intron pnr + chr3R 16033466 intron pnr + chr3R 16033546 intron pnr + chr3R_28_16030001 chr3R_16030001 RAL-395 2549 chr3R 16167798 16167829 chr3R 16167919 16167950 17 121 5.5 9.5 7.5 2.0 152 chr3R 16167798 intron CG6006 + chr3R 16167874 intron CG6006 + chr3R 16167950 exon CG6006 + chr3R_17_16165001 chr3R_16165001 RAL-395 2550 chr3R 16201796 16201840 chr3R 16201900 16201944 6 103 7.0 5.0 6.0 0.9 148 chr3R 16201796 intron CG6126 - chr3R 16201870 intron CG6126 - chr3R 16201944 intron CG6126 - chr3R_6_16200001 chr3R_16200001 RAL-395 2551 chr3R 16225066 16225119 chr3R 16225177 16225230 15 111 4.0 7.0 5.5 2.3 164 chr3R 16225066 intergenic not near genes chr3R 16225148 intergenic not near genes chr3R 16225230 intergenic tara + chr3R_15_16225001 chr3R_16225001 RAL-395 2552 chr3R 16246542 16246554 chr3R 16246611 16246656 8 98 3.5 13.0 8.2 0.9 114 chr3R 16246542 intron tara + chr3R 16246599 intron tara + chr3R 16246656 intron tara + chr3R_8_16245001 chr3R_16245001 RAL-395 2553 chr3R 16253508 16253569 chr3R 16253620 16253680 5 111 0.0 2.5 1.2 2.3 172 chr3R 16253508 intron tara + chr3R 16253594 intron tara + chr3R 16253680 intron tara + chr3R_5_16250001 chr3R_16250001 RAL-395 2554 chr3R 16374278 16374327 chr3R 16374421 16374470 18 143 3.0 8.0 5.5 2.8 192 chr3R 16374278 intergenic ss - chr3R 16374374 intergenic ss - chr3R 16374470 3` UTR ss - chr3R_18_16370001 chr3R_16370001 RAL-395 2555 chr3R 16472560 16472593 chr3R 16472662 16472695 27 100 20.5 19.5 20.0 1.3 135 chr3R 16472560 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472695 5` UTR Gyc-89Da + chr3R_27_16470001 chr3R_16470001 RAL-395 2556 chr3R 16582887 16582919 chr3R 16582992 16583024 17 105 9.0 12.5 10.8 1.4 137 chr3R 16582887 intron Scp2 - chr3R 16582956 intron Scp2 - chr3R 16583024 intron Scp2 - chr3R_17_16580001 chr3R_16580001 RAL-395 2557 chr3R 16589025 16589027 chr3R 30107669 30107671 4 13518644 44.0 33.0 38.5 0.1 13518646 chr3R 16589025 intergenic not near genes chr3R 23348348 exon DNApol-epsilon + chr3R 30107671 intron sima + chr3R_4_23345001 chr3R_23345001 RAL-395 2558 chr3R 16633666 16633684 chr3R 16633792 16633810 15 126 18.0 19.0 18.5 0.8 144 chr3R 16633666 intron Fas1 + chr3R 16633738 intron Fas1 + chr3R 16633810 intron Fas1 + chr3R_15_16630001 chr3R_16630001 RAL-395 2559 chr3R 16732127 16732169 chr3R 16732249 16732291 12 122 0.0 5.0 2.5 3.4 164 chr3R 16732127 intron Ubx - chr3R 16732209 intron Ubx - chr3R 16732291 intron Ubx - chr3R_12_16730001 chr3R_16730001 RAL-395 2560 chr3R 16734858 16734879 chr3R 16734967 16734988 8 108 0.0 4.5 2.2 2.5 130 chr3R 16734858 intergenic Ubx - chr3R 16734923 intergenic Ubx - chr3R 16734988 intergenic not near genes chr3R_8_16730001 chr3R_16730001 RAL-395 2561 chr3R 16756296 16756349 chr3R 16762513 16762563 diver 21 6216 14.5 3.0 8.8 2.1 6267 chr3R 16756296 intron bxd - chr3R 16759430 intron bxd - chr3R 16762563 intron bxd - chr3R_21_16755001 chr3R_16755001 RAL-395 2562 chr3R 17024378 17024429 chr3R 17024668 17024719 36 289 9.5 10.5 10.0 3.3 341 chr3R 17024378 intron Pxd + chr3R 17024548 intron Pxd + chr3R 17024719 intron Pxd + chr3R_36_17020001 chr3R_17020001 RAL-395 2563 chr3R 17101118 17101129 chr3R 17101224 17101235 9 106 7.5 0.0 3.8 1.9 117 chr3R 17101118 intron cher - chr3R 17101176 intron cher - chr3R 17101235 intron cher - chr3R_9_17100001 chr3R_17100001 RAL-395 2564 chr3R 17121495 17121553 chr3R 17121716 17121774 33 221 7.5 5.0 6.2 4.6 279 chr3R 17121495 intron cher - chr3R 17121634 intron,exon cher -,CG42779 + chr3R 17121774 intron,exon cher -,CG42779 + chr3R_33_17120001 chr3R_17120001 RAL-395 2565 chr3R 17184710 17184752 chr3R 17184812 17184854 11 102 5.0 7.5 6.2 1.5 144 chr3R 17184710 intron Mur89F - chr3R 17184782 intron Mur89F - chr3R 17184854 intron Mur89F - chr3R_11_17180001 chr3R_17180001 RAL-395 2566 chr3R 17214586 17214634 chr3R 17214698 17214746 22 112 2.0 8.0 5.0 3.7 160 chr3R 17214586 intergenic not near genes chr3R 17214666 intergenic not near genes chr3R 17214746 intergenic not near genes chr3R_22_17210001 chr3R_17210001 RAL-395 2567 chr3R 17256727 17256785 chr3R 17256873 17256931 19 145 3.0 6.0 4.5 3.5 204 chr3R 17256727 intron beat-IIb - chr3R 17256829 intron beat-IIb - chr3R 17256931 intron beat-IIb - chr3R_19_17255001 chr3R_17255001 RAL-395 2568 chr3R 17294639 17294704 chr3R 17295093 17295163 BS 23 454 6.0 0.0 3.0 5.8 524 chr3R 17294639 intergenic not near genes chr3R 17294901 intergenic not near genes chr3R 17295163 intergenic not near genes chr3R_23_17290001 chr3R_17290001 RAL-395 2569 chr3R 17346688 17346710 chr3R 17348258 17348299 F-element 6 1585 7.0 9.5 8.2 0.7 1611 chr3R 17346688 intron beat-IIa - chr3R 17347494 intron beat-IIa - chr3R 17348299 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-395 2570 chr3R 17353421 17353474 chr3R 17353524 17353576 20 103 11.0 7.0 9.0 2.0 155 chr3R 17353421 intron beat-IIa - chr3R 17353498 intron beat-IIa - chr3R 17353576 intron beat-IIa - chr3R_20_17350001 chr3R_17350001 RAL-395 2571 chr3R 17354807 17354811 chr3R 17354965 17354969 4 158 8.0 3.5 5.8 0.6 162 chr3R 17354807 intron beat-IIa - chr3R 17354888 intron beat-IIa - chr3R 17354969 intron beat-IIa - chr3R_4_17350001 chr3R_17350001 RAL-395 2572 chr3R 17461172 17461232 chr3R 17461280 17461331 18 107 6.0 4.0 5.0 3.0 159 chr3R 17461172 intergenic not near genes chr3R 17461252 intergenic not near genes chr3R 17461331 intergenic not near genes chr3R_18_17460001 chr3R_17460001 RAL-395 2573 chr3R 17497937 17497989 chr3R 17498049 17498101 24 112 5.0 5.5 5.2 3.9 164 chr3R 17497937 intron Dscam3 - chr3R 17498019 intron Dscam3 - chr3R 17498101 intron Dscam3 - chr3R_24_17495001 chr3R_17495001 RAL-395 2574 chr3R 17507425 17507474 chr3R 17507529 17507578 19 104 7.5 7.0 7.2 2.3 153 chr3R 17507425 intergenic not near genes chr3R 17507502 intergenic not near genes chr3R 17507578 intergenic not near genes chr3R_19_17505001 chr3R_17505001 RAL-395 2575 chr3R 17509231 17509242 chr3R 17516805 17516816 412 10 7574 13.5 21.0 17.2 0.5 7585 chr3R 17509231 intergenic not near genes chr3R 17513024 intergenic not near genes chr3R 17516816 intergenic not near genes chr3R_10_17510001 chr3R_17510001 RAL-395 2576 chr3R 17591261 17591312 chr3R 17591721 17591774 F-element 28 461 11.0 8.0 9.5 2.7 513 chr3R 17591261 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591774 intergenic not near genes chr3R_28_17590001 chr3R_17590001 RAL-395 2577 chr3R 17630338 17630369 chr3R 17630449 17630480 8 111 3.5 2.0 2.8 2.1 142 chr3R 17630338 intergenic CG43175 + chr3R 17630409 intergenic CG43175 + chr3R 17630480 intergenic CG43175 + chr3R_8_17630001 chr3R_17630001 RAL-395 2578 chr3R 17638293 17638345 chr3R 17638805 17638857 roo 23 512 9.0 9.0 9.0 2.3 564 chr3R 17638293 intron CG43175 + chr3R 17638575 intron CG43175 + chr3R 17638857 intron,intron CG43175 +,CR45222 + chr3R_23_17635001 chr3R_17635001 RAL-395 2579 chr3R 17725046 17725069 chr3R 17725166 17725188 13 120 10.0 0.0 5.0 2.2 142 chr3R 17725046 intergenic Atg8b - chr3R 17725117 intergenic Atg8b - chr3R 17725188 intergenic Atg8b - chr3R_13_17725001 chr3R_17725001 RAL-395 2580 chr3R 17734101 17734135 chr3R 17734216 17734250 24 114 6.0 12.5 9.2 2.4 149 chr3R 17734101 3` UTR CG14321 + chr3R 17734176 3` UTR CG14321 + chr3R 17734250 3` UTR CG14321 + chr3R_24_17730001 chr3R_17730001 RAL-395 2581 chr3R 17734833 17734854 chr3R 17734972 17734993 7 138 3.0 3.0 3.0 1.8 160 chr3R 17734833 intergenic CG14321 + chr3R 17734913 intergenic not near genes chr3R 17734993 intergenic not near genes chr3R_7_17730001 chr3R_17730001 RAL-395 2582 chr3R 17766555 17766587 chr3R 17766685 17766717 17 130 9.5 8.0 8.8 1.7 162 chr3R 17766555 intergenic not near genes chr3R 17766636 intergenic not near genes chr3R 17766717 intergenic not near genes chr3R_17_17765001 chr3R_17765001 RAL-395 2583 chr3R 17773349 17773378 chr3R 17773470 17773499 14 121 13.0 12.5 12.8 1.0 150 chr3R 17773349 exon CG43102 - chr3R 17773424 intron CG43102 - chr3R 17773499 exon CG43102 - chr3R_14_17770001 chr3R_17770001 RAL-395 2584 chr3R 17805608 17805634 chr3R 17805716 17805738 7 107 3.0 7.0 5.0 1.2 130 chr3R 17805608 intergenic CG17801 -,CG17802 - chr3R 17805673 intergenic CG17801 -,CG17802 - chr3R 17805738 exon CG17801 - chr3R_7_17805001 chr3R_17805001 RAL-395 2585 chr3R 17811171 17811201 chr3R 17811277 17811307 11 105 13.5 0.0 6.8 1.4 136 chr3R 17811171 intergenic CG18012 -,tinc + chr3R 17811239 intergenic CG18012 -,tinc + chr3R 17811307 intergenic CG18012 -,tinc + chr3R_11_17810001 chr3R_17810001 RAL-395 2586 chr3R 17820265 17820286 chr3R 17820370 17820391 6 105 9.0 0.0 4.5 1.1 126 chr3R 17820265 intron tinc + chr3R 17820328 intron tinc + chr3R 17820391 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-395 2587 chr3R 17823183 17823215 chr3R 17823294 17823326 18 111 8.5 9.0 8.8 1.8 143 chr3R 17823183 intron tinc + chr3R 17823254 intron tinc + chr3R 17823326 intron tinc + chr3R_18_17820001 chr3R_17820001 RAL-395 2588 chr3R 17826741 17826799 chr3R 17827098 17827156 26 356 5.5 8.0 6.8 3.3 415 chr3R 17826741 intron tinc + chr3R 17826948 intron tinc + chr3R 17827156 intron tinc + chr3R_26_17825001 chr3R_17825001 RAL-395 2589 chr3R 17898350 17898355 chr3R 17898454 17898462 4 107 9.0 23.0 16.0 0.2 112 chr3R 17898350 intron Rim - chr3R 17898406 intron Rim - chr3R 17898462 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-395 2590 chr3R 17901314 17901318 chr3R 17901407 17901423 4 102 9.0 21.5 15.2 0.2 109 chr3R 17901314 intron Rim - chr3R 17901368 intron Rim - chr3R 17901423 intron Rim - chr3R_4_17900001 chr3R_17900001 RAL-395 2591 chr3R 17913099 17913145 chr3R 17913220 17913266 9 120 0.0 7.0 3.5 2.0 167 chr3R 17913099 intron Rim - chr3R 17913182 intron Rim - chr3R 17913266 intron Rim - chr3R_9_17910001 chr3R_17910001 RAL-395 2592 chr3R 17925832 17925875 chr3R 17927325 17927368 hobo 27 1492 15.5 11.5 13.5 1.9 1536 chr3R 17925832 intron cpo + chr3R 17926600 intron cpo + chr3R 17927368 intron cpo + chr3R_27_17925001 chr3R_17925001 RAL-395 2593 chr3R 17958046 17958053 chr3R 17958150 17958158 6 105 0.0 20.0 10.0 0.5 112 chr3R 17958046 intron cpo + chr3R 17958102 intron cpo + chr3R 17958158 intron cpo + chr3R_6_17955001 chr3R_17955001 RAL-395 2594 chr3R 17991651 17991705 chr3R 17991900 17991955 30 249 5.0 10.5 7.8 3.4 304 chr3R 17991651 intron cpo + chr3R 17991803 intron cpo + chr3R 17991955 intron cpo + chr3R_30_17990001 chr3R_17990001 RAL-395 2595 chr3R 18018911 18018953 chr3R 18019027 18019060 9 113 0.0 4.0 2.0 3.0 149 chr3R 18018911 intergenic cpo +,DNaseII + chr3R 18018986 intergenic cpo +,DNaseII + chr3R 18019060 intergenic cpo +,DNaseII + chr3R_9_18015001 chr3R_18015001 RAL-395 2596 chr3R 18032784 18032809 chr3R 18040476 18040504 opus 5 7695 0.5 5.0 2.8 1.3 7720 chr3R 18032784 intergenic not near genes chr3R 18036644 intergenic not near genes chr3R 18040504 intergenic not near genes chr3R_5_18035001 chr3R_18035001 RAL-395 2597 chr3R 18041740 18041759 chr3R 18041843 18041861 7 101 3.0 1.0 2.0 2.3 121 chr3R 18041740 intergenic not near genes chr3R 18041800 intergenic not near genes chr3R 18041861 intergenic not near genes chr3R_7_18040001 chr3R_18040001 RAL-395 2598 chr3R 18061418 18061459 chr3R 18061535 18061577 13 118 5.0 0.0 2.5 3.7 159 chr3R 18061418 intergenic not near genes chr3R 18061498 intergenic not near genes chr3R 18061577 intergenic not near genes chr3R_13_18060001 chr3R_18060001 RAL-395 2599 chr3R 18061546 18061616 chr3R 18063146 18063210 F-element 9 1598 0.0 0.0 0.0 9.0 1664 chr3R 18061546 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063210 intergenic not near genes chr3R_9_18060001 chr3R_18060001 RAL-395 2600 chr3R 18067953 18068025 chr3R 18068075 18068133 14 115 0.0 7.5 3.8 2.9 180 chr3R 18067953 intergenic not near genes chr3R 18068043 intergenic not near genes chr3R 18068133 intergenic not near genes chr3R_14_18065001 chr3R_18065001 RAL-395 2601 chr3R 18078130 18078153 chr3R 18078234 18078258 4 105 23.0 0.0 11.5 0.3 128 chr3R 18078130 intergenic not near genes chr3R 18078194 intergenic not near genes chr3R 18078258 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-395 2602 chr3R 18107125 18107134 chr3R 18107234 18107243 4 109 0.5 11.0 5.8 0.6 118 chr3R 18107125 intron sr + chr3R 18107184 intron sr + chr3R 18107243 intron sr + chr3R_4_18105001 chr3R_18105001 RAL-395 2603 chr3R 18117396 18117440 chr3R 18117498 18117542 8 98 4.5 9.5 7.0 1.0 146 chr3R 18117396 intron sr + chr3R 18117469 intron sr + chr3R 18117542 intron sr + chr3R_8_18115001 chr3R_18115001 RAL-395 2604 chr3R 18122875 18122916 chr3R 18122978 18123019 4 103 2.5 6.0 4.2 0.8 144 chr3R 18122875 intron sr + chr3R 18122947 intron sr + chr3R 18123019 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-395 2605 chr3R 18143534 18143589 chr3R 18143649 18143704 25 114 9.0 8.0 8.5 2.6 170 chr3R 18143534 intergenic not near genes chr3R 18143619 intergenic not near genes chr3R 18143704 intergenic not near genes chr3R_25_18140001 chr3R_18140001 RAL-395 2606 chr3R 18157415 18157623 chr3R 18157526 18157757 6 126 0.0 0.0 0.0 6.0 342 chr3R 18157415 intergenic CR45103 + chr3R 18157586 intergenic CR45103 + chr3R 18157757 5` UTR CR45103 + chr3R_6_18155001 chr3R_18155001 RAL-395 2607 chr3R 18235186 18235243 chr3R 18235388 18235445 34 202 11.5 6.5 9.0 3.4 259 chr3R 18235186 intergenic not near genes chr3R 18235316 intergenic not near genes chr3R 18235445 intergenic not near genes chr3R_34_18235001 chr3R_18235001 RAL-395 2608 chr3R 18302961 18302992 chr3R 18303092 18303123 7 131 5.5 0.0 2.8 1.8 162 chr3R 18302961 intergenic CG7126 -,PKD - chr3R 18303042 intergenic CG7126 -,PKD - chr3R 18303123 intergenic PKD -,CG7126 - chr3R_7_18300001 chr3R_18300001 RAL-395 2609 chr3R 18328565 18328588 chr3R 18328667 18328690 9 102 8.5 21.5 15.0 0.6 125 chr3R 18328565 intron CG31235 - chr3R 18328628 intron CG31235 - chr3R 18328690 intron CG31235 - chr3R_9_18325001 chr3R_18325001 RAL-395 2610 chr3R 18338981 18339028 chr3R 18339111 18339158 17 130 0.0 7.0 3.5 3.8 177 chr3R 18338981 intron CG15803 - chr3R 18339070 intron CG15803 - chr3R 18339158 intron CG15803 - chr3R_17_18335001 chr3R_18335001 RAL-395 2611 chr3R 18433997 18434051 chr3R 18434102 18434156 5 105 5.5 0.0 2.8 1.3 159 chr3R 18433997 intron fru - chr3R 18434076 intron fru - chr3R 18434156 intron fru - chr3R_5_18430001 chr3R_18430001 RAL-395 2612 chr3R 18464286 18464341 chr3R 18464450 18464505 12 164 0.0 12.0 6.0 1.7 219 chr3R 18464286 intron fru - chr3R 18464396 intron fru - chr3R 18464505 intron fru - chr3R_12_18460001 chr3R_18460001 RAL-395 2613 chr3R 18472257 18472295 chr3R 18472384 18472421 21 127 6.5 2.5 4.5 3.8 164 chr3R 18472257 intron fru - chr3R 18472339 intron fru - chr3R 18472421 intron fru - chr3R_21_18470001 chr3R_18470001 RAL-395 2614 chr3R 18481011 18481068 chr3R 18481134 18481191 31 122 5.0 6.5 5.8 4.6 180 chr3R 18481011 intron fru - chr3R 18481101 intron fru - chr3R 18481191 intron fru - chr3R_31_18480001 chr3R_18480001 RAL-395 2615 chr3R 18485305 18485349 chr3R 18485431 18485475 5 126 3.0 4.5 3.8 1.0 170 chr3R 18485305 intron fru - chr3R 18485390 intron fru - chr3R 18485475 intron fru - chr3R_5_18485001 chr3R_18485001 RAL-395 2616 chr3R 18501578 18501623 chr3R 18501684 18501730 22 107 12.5 16.0 14.2 1.4 152 chr3R 18501578 intron fru - chr3R 18501654 intron fru - chr3R 18501730 intron fru - chr3R_22_18500001 chr3R_18500001 RAL-395 2617 chr3R 18528341 18528389 chr3R 18528454 18528502 22 113 11.5 5.0 8.2 2.4 161 chr3R 18528341 intron fru - chr3R 18528422 intron fru - chr3R 18528502 intron fru - chr3R_22_18525001 chr3R_18525001 RAL-395 2618 chr3R 18559408 18559413 chr3R 18559511 18559516 5 103 4.5 0.0 2.2 1.6 108 chr3R 18559408 intergenic CG7691 + chr3R 18559462 intergenic CG7691 + chr3R 18559516 intergenic CG7691 + chr3R_5_18555001 chr3R_18555001 RAL-395 2619 chr3R 18606481 18606526 chr3R 18610739 18610784 F-element 21 4255 11.5 11.0 11.2 1.7 4303 chr3R 18606481 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_21_18605001 chr3R_18605001 RAL-395 2620 chr3R 18637498 18637550 chr3R 18637626 18637677 30 127 7.5 7.5 7.5 3.5 179 chr3R 18637498 intron,intron qin +,CG14301 - chr3R 18637588 intron,intron qin +,CG14301 - chr3R 18637677 intron,intron qin +,CG14301 - chr3R_30_18635001 chr3R_18635001 RAL-395 2621 chr3R 18720286 18720340 chr3R 18720406 18720462 21 122 6.5 7.0 6.8 2.7 176 chr3R 18720286 intron Cha + chr3R 18720374 intron Cha + chr3R 18720462 intron Cha + chr3R_21_18720001 chr3R_18720001 RAL-395 2622 chr3R 18770272 18770322 chr3R 18770380 18770427 24 107 9.0 6.0 7.5 2.8 155 chr3R 18770272 intron CG7720 - chr3R 18770350 intron CG7720 - chr3R 18770427 intron CG7720 - chr3R_24_18770001 chr3R_18770001 RAL-395 2623 chr3R 18781665 18781720 chr3R 18781767 18781822 28 101 11.0 8.5 9.8 2.6 157 chr3R 18781665 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781822 intron CG7720 - chr3R_28_18780001 chr3R_18780001 RAL-395 2624 chr3R 18785847 18785849 chr3R 18785950 18785952 4 103 22.5 1.5 12.0 0.3 105 chr3R 18785847 intron CG7720 - chr3R 18785900 intron CG7720 - chr3R 18785952 intron CG7720 - chr3R_4_18785001 chr3R_18785001 RAL-395 2625 chr3R 18785850 18785901 chr3R 18785942 18786004 21 101 6.5 3.5 5.0 3.5 154 chr3R 18785850 intron CG7720 - chr3R 18785927 intron CG7720 - chr3R 18786004 intron CG7720 - chr3R_21_18785001 chr3R_18785001 RAL-395 2626 chr3R 18792777 18792834 chr3R 18792886 18792943 14 108 6.5 0.0 3.2 3.3 166 chr3R 18792777 intron CG7720 - chr3R 18792860 intron CG7720 - chr3R 18792943 intron CG7720 - chr3R_14_18790001 chr3R_18790001 RAL-395 2627 chr3R 18807310 18807328 chr3R 18807411 18807430 5 102 5.0 0.0 2.5 1.4 120 chr3R 18807310 intron CG18208 - chr3R 18807370 intron CG18208 - chr3R 18807430 intron CG18208 - chr3R_5_18805001 chr3R_18805001 RAL-395 2628 chr3R 18876950 18877003 chr3R 18877054 18877107 28 104 7.0 4.5 5.8 4.1 157 chr3R 18876950 3` UTR CG14298 + chr3R 18877028 3` UTR CG14298 + chr3R 18877107 3` UTR CG14298 + chr3R_28_18875001 chr3R_18875001 RAL-395 2629 chr3R 18885905 18885955 chr3R 18886012 18886057 25 106 9.5 0.0 4.8 4.3 152 chr3R 18885905 intergenic not near genes chr3R 18885981 intergenic not near genes chr3R 18886057 intergenic not near genes chr3R_25_18885001 chr3R_18885001 RAL-395 2630 chr3R 18887577 18887598 chr3R 18887684 18887705 15 106 17.0 18.0 17.5 0.8 128 chr3R 18887577 intergenic not near genes chr3R 18887641 intergenic not near genes chr3R 18887705 intergenic not near genes chr3R_15_18885001 chr3R_18885001 RAL-395 2631 chr3R 18897584 18897607 chr3R 18897685 18897709 5 102 6.0 5.5 5.8 0.7 125 chr3R 18897584 intergenic not near genes chr3R 18897646 intergenic CG14297 + chr3R 18897709 intergenic CG14297 + chr3R_5_18895001 chr3R_18895001 RAL-395 2632 chr3R 18933779 18933811 chr3R 18933885 18933916 18 105 14.0 15.5 14.8 1.1 137 chr3R 18933779 intron CG42613 + chr3R 18933848 intron CG42613 + chr3R 18933916 intron CG42613 + chr3R_18_18930001 chr3R_18930001 RAL-395 2633 chr3R 18935495 18935545 chr3R 18935843 18935892 33 347 11.5 1.5 6.5 4.4 397 chr3R 18935495 intron CG42613 + chr3R 18935694 intron CG42613 + chr3R 18935892 intron CG42613 + chr3R_33_18935001 chr3R_18935001 RAL-395 2634 chr3R 18988502 18988545 chr3R 18988787 18988830 17 285 9.0 3.5 6.2 2.4 328 chr3R 18988502 intron gukh + chr3R 18988666 intron gukh + chr3R 18988830 intron gukh + chr3R_17_18985001 chr3R_18985001 RAL-395 2635 chr3R 19136408 19136445 chr3R 19139768 19139806 Bari1 26 3363 113.0 56.0 84.5 0.3 3398 chr3R 19136408 exon Cyp12a4 + chr3R 19138107 intergenic not near genes chr3R 19139806 3` UTR Ppcs - chr3R_26_19135001 chr3R_19135001 RAL-395 2636 chr3R 19140242 19140292 chr3R 19140715 19140766 24 474 11.0 8.0 9.5 2.3 524 chr3R 19140242 3` UTR Ppcs - chr3R 19140504 3` UTR Ppcs - chr3R 19140766 3` UTR Ppcs - chr3R_24_19140001 chr3R_19140001 RAL-395 2637 chr3R 19151323 19151333 chr3R 19151425 19151436 4 102 9.5 19.0 14.2 0.3 113 chr3R 19151323 intron CG5835 - chr3R 19151380 intron CG5835 - chr3R 19151436 intron CG5835 - chr3R_4_19150001 chr3R_19150001 RAL-395 2638 chr3R 19193002 19193005 chr3R 19197282 19197335 F-element 6 4304 1.5 6.0 3.8 1.2 4333 chr3R 19193002 intron CG31475 + chr3R 19195168 intron CG31475 + chr3R 19197335 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-395 2639 chr3R 19248851 19248881 chr3R 19248957 19248962 18 104 21.5 0.0 10.8 1.5 111 chr3R 19248851 intergenic not near genes chr3R 19248906 intergenic not near genes chr3R 19248962 intergenic not near genes chr3R_18_19245001 chr3R_19245001 RAL-395 2640 chr3R 19337194 19337211 chr3R 19337297 19337300 14 101 24.0 27.5 25.8 0.5 106 chr3R 19337194 intergenic not near genes chr3R 19337247 intergenic not near genes chr3R 19337300 intergenic not near genes chr3R_14_19335001 chr3R_19335001 RAL-395 2641 chr3R 19340379 19340428 chr3R 19340481 19340531 21 103 3.5 3.0 3.2 5.0 152 chr3R 19340379 intergenic not near genes chr3R 19340455 intergenic not near genes chr3R 19340531 intergenic not near genes chr3R_21_19340001 chr3R_19340001 RAL-395 2642 chr3R 19364409 19364452 chr3R 19364585 19364628 22 175 8.5 6.5 7.5 2.6 219 chr3R 19364409 intergenic not near genes chr3R 19364518 intergenic not near genes chr3R 19364628 intergenic not near genes chr3R_22_19360001 chr3R_19360001 RAL-395 2643 chr3R 19430483 19430543 chr3R 19430593 19430624 18 107 7.5 7.0 7.2 2.2 141 chr3R 19430483 intron CG31221 + chr3R 19430554 intron CG31221 + chr3R 19430624 intron CG31221 + chr3R_18_19430001 chr3R_19430001 RAL-395 2644 chr3R 19602737 19602790 chr3R 19602840 19602894 20 104 7.5 5.0 6.2 2.8 157 chr3R 19602737 intergenic CG7333 + chr3R 19602816 intergenic CG7333 + chr3R 19602894 intergenic CG7333 +,CG7342 + chr3R_20_19600001 chr3R_19600001 RAL-395 2645 chr3R 19628267 19628320 chr3R 19628444 19628497 28 177 10.0 10.0 10.0 2.5 230 chr3R 19628267 intron CG6231 - chr3R 19628382 intron CG6231 - chr3R 19628497 intron CG6231 - chr3R_28_19625001 chr3R_19625001 RAL-395 2646 chr3R 19633276 19633321 chr3R 19633388 19633433 13 112 2.0 10.5 6.2 1.8 157 chr3R 19633276 intergenic subdued - chr3R 19633354 intergenic subdued - chr3R 19633433 3` UTR subdued - chr3R_13_19630001 chr3R_19630001 RAL-395 2647 chr3R 19651702 19651754 chr3R 19651804 19651856 35 101 9.5 6.0 7.8 4.0 154 chr3R 19651702 exon CG31219 + chr3R 19651779 exon CG31219 + chr3R 19651856 intron CG31219 + chr3R_35_19650001 chr3R_19650001 RAL-395 2648 chr3R 19702297 19702304 chr3R 19702405 19702412 5 108 16.0 9.0 12.5 0.4 115 chr3R 19702297 intergenic not near genes chr3R 19702354 intergenic not near genes chr3R 19702412 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-395 2649 chr3R 19702308 19702353 chr3R 19702402 19702461 25 107 7.5 7.5 7.5 2.9 153 chr3R 19702308 intergenic not near genes chr3R 19702384 intergenic not near genes chr3R 19702461 intergenic not near genes chr3R_25_19700001 chr3R_19700001 RAL-395 2650 chr3R 19734000 19734011 chr3R 19734104 19734114 6 104 7.0 9.5 8.2 0.7 114 chr3R 19734000 intron GluClalpha + chr3R 19734057 intron GluClalpha + chr3R 19734114 intron GluClalpha + chr3R_6_19730001 chr3R_19730001 RAL-395 2651 chr3R 19825006 19825047 chr3R 19825113 19825154 16 107 7.5 3.5 5.5 2.5 148 chr3R 19825006 intron bnl - chr3R 19825080 intron bnl - chr3R 19825154 intron bnl - chr3R_16_19825001 chr3R_19825001 RAL-395 2652 chr3R 19846933 19846965 chr3R 19847119 19847151 15 185 9.5 0.0 4.8 2.6 218 chr3R 19846933 intergenic CG4662 + chr3R 19847042 intergenic CG4662 + chr3R 19847151 intergenic CG4662 + chr3R_15_19845001 chr3R_19845001 RAL-395 2653 chr3R 19848285 19848293 chr3R 19848404 19848425 6 130 0.0 1.0 0.5 4.0 140 chr3R 19848285 intron CG4662 + chr3R 19848355 intron CG4662 + chr3R 19848425 intron CG4662 + chr3R_6_19845001 chr3R_19845001 RAL-395 2654 chr3R 19908242 19908305 chr3R 19908352 19908414 15 110 0.0 6.5 3.2 3.6 172 chr3R 19908242 intron RhoGAP92B + chr3R 19908328 intron RhoGAP92B + chr3R 19908414 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_15_19905001 chr3R_19905001 RAL-395 2655 chr3R 19943854 19943892 chr3R 19943959 19943969 14 102 9.5 5.0 7.2 1.7 115 chr3R 19943854 intron Hs6st - chr3R 19943912 intron Hs6st - chr3R 19943969 intron Hs6st - chr3R_14_19940001 chr3R_19940001 RAL-395 2656 chr3R 19953926 19953982 chr3R 19954029 19954076 27 102 9.0 9.0 9.0 2.7 150 chr3R 19953926 intron Hs6st - chr3R 19954001 intron Hs6st - chr3R 19954076 intron Hs6st - chr3R_27_19950001 chr3R_19950001 RAL-395 2657 chr3R 20052081 20052132 chr3R 20052465 20052515 25 383 12.0 13.5 12.8 1.8 434 chr3R 20052081 intron CG17193 - chr3R 20052298 intron CG17193 - chr3R 20052515 intron CG17193 - chr3R_25_20050001 chr3R_20050001 RAL-395 2658 chr3R 20109512 20109564 chr3R 20114744 20114796 copia 21 5232 5.0 9.0 7.0 2.6 5284 chr3R 20109512 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114796 intergenic CG10887 + chr3R_21_20110001 chr3R_20110001 RAL-395 2659 chr3R 20156673 20156717 chr3R 20165869 20165913 roo 12 9196 7.0 7.0 7.0 1.5 9240 chr3R 20156673 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165913 intergenic not near genes chr3R_12_20160001 chr3R_20160001 RAL-395 2660 chr3R 20222244 20222283 chr3R 20222353 20222392 10 109 0.5 8.0 4.2 1.9 148 chr3R 20222244 intron Nlg4 + chr3R 20222318 intron Nlg4 + chr3R 20222392 intron Nlg4 + chr3R_10_20220001 chr3R_20220001 RAL-395 2661 chr3R 20230297 20230350 chr3R 20230403 20230453 15 108 3.5 0.0 1.8 5.4 156 chr3R 20230297 intron Nlg4 + chr3R 20230375 intron Nlg4 + chr3R 20230453 intron Nlg4 + chr3R_15_20230001 chr3R_20230001 RAL-395 2662 chr3R 20242550 20242610 chr3R 20242679 20242739 24 129 7.0 5.5 6.2 3.3 189 chr3R 20242550 intron Nlg4 + chr3R 20242644 intron Nlg4 + chr3R 20242739 intron Nlg4 + chr3R_24_20240001 chr3R_20240001 RAL-395 2663 chr3R 20245270 20245305 chr3R 20248905 20248941 F-element 15 3636 0.0 2.0 1.0 7.5 3671 chr3R 20245270 3` UTR Nlg4 + chr3R 20247106 intergenic not near genes chr3R 20248941 intergenic not near genes chr3R_15_20245001 chr3R_20245001 RAL-395 2664 chr3R 20252196 20252244 chr3R 20252300 20252346 11 104 4.5 1.5 3.0 2.8 150 chr3R 20252196 intergenic not near genes chr3R 20252271 intergenic cic + chr3R 20252346 intergenic cic + chr3R_11_20250001 chr3R_20250001 RAL-395 2665 chr3R 20256814 20256871 chr3R 20256916 20256975 11 103 1.0 9.0 5.0 1.8 161 chr3R 20256814 intron cic + chr3R 20256894 intron cic + chr3R 20256975 intron cic + chr3R_11_20255001 chr3R_20255001 RAL-395 2666 chr3R 20266493 20266535 chr3R 20272990 20273032 Burdock 16 6497 1.5 10.5 6.0 2.3 6539 chr3R 20266493 intron cic + chr3R 20269762 intron cic + chr3R 20273032 intron cic + chr3R_16_20265001 chr3R_20265001 RAL-395 2667 chr3R 20282251 20282306 chr3R 20282353 20282408 19 102 1.5 5.5 3.5 4.2 157 chr3R 20282251 intron cic + chr3R 20282330 intron cic + chr3R 20282408 intron cic + chr3R_19_20280001 chr3R_20280001 RAL-395 2668 chr3R 20308163 20308219 chr3R 20308276 20308344 15 119 8.0 0.0 4.0 3.0 181 chr3R 20308163 intergenic not near genes chr3R 20308254 intergenic not near genes chr3R 20308344 intergenic not near genes chr3R_15_20305001 chr3R_20305001 RAL-395 2669 chr3R 20330982 20331021 chr3R 20331494 20331533 roo 14 512 7.0 6.0 6.5 1.9 551 chr3R 20330982 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331533 intergenic not near genes chr3R_14_20330001 chr3R_20330001 RAL-395 2670 chr3R 20450087 20450143 chr3R 20450197 20450254 8 110 0.0 0.0 0.0 8.0 167 chr3R 20450087 intron Gfrl - chr3R 20450170 intron Gfrl - chr3R 20450254 intron Gfrl - chr3R_8_20450001 chr3R_20450001 RAL-395 2671 chr3R 20458448 20458503 chr3R 20458553 20458608 36 105 8.0 8.5 8.2 3.9 160 chr3R 20458448 intron Gfrl - chr3R 20458528 intron Gfrl - chr3R 20458608 intron Gfrl - chr3R_36_20455001 chr3R_20455001 RAL-395 2672 chr3R 20488993 20489044 chr3R 20489095 20489146 14 102 9.5 6.5 8.0 1.6 153 chr3R 20488993 intergenic not near genes chr3R 20489070 intergenic not near genes chr3R 20489146 intergenic not near genes chr3R_14_20485001 chr3R_20485001 RAL-395 2673 chr3R 20506561 20506611 chr3R 20507390 20507440 BS 21 828 7.5 11.5 9.5 2.0 879 chr3R 20506561 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507440 3` UTR CG4288 - chr3R_21_20505001 chr3R_20505001 RAL-395 2674 chr3R 20516519 20516570 chr3R 20516901 20516952 26 382 2.5 7.5 5.0 4.3 433 chr3R 20516519 intergenic not near genes chr3R 20516736 intergenic not near genes chr3R 20516952 intergenic not near genes chr3R_26_20515001 chr3R_20515001 RAL-395 2675 chr3R 20594461 20594505 chr3R 20594577 20594620 6 115 2.0 0.0 1.0 3.0 159 chr3R 20594461 intron bon + chr3R 20594540 intron bon + chr3R 20594620 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-395 2676 chr3R 20596166 20596215 chr3R 20596278 20596327 15 112 2.5 5.5 4.0 3.0 161 chr3R 20596166 intron bon + chr3R 20596246 intron bon + chr3R 20596327 intron bon + chr3R_15_20595001 chr3R_20595001 RAL-395 2677 chr3R 20686936 20686989 chr3R 20687397 20687450 25 461 7.0 7.5 7.2 3.0 514 chr3R 20686936 intergenic not near genes chr3R 20687193 intergenic not near genes chr3R 20687450 intergenic not near genes chr3R_25_20685001 chr3R_20685001 RAL-395 2678 chr3R 20717076 20717111 chr3R 20717184 20717188 8 102 4.5 11.0 7.8 0.9 112 chr3R 20717076 intergenic not near genes chr3R 20717132 intergenic not near genes chr3R 20717188 intergenic not near genes chr3R_8_20715001 chr3R_20715001 RAL-395 2679 chr3R 20730917 20730944 chr3R 20731034 20731061 17 117 9.0 0.0 4.5 3.1 144 chr3R 20730917 intergenic not near genes chr3R 20730989 intergenic not near genes chr3R 20731061 intergenic not near genes chr3R_17_20730001 chr3R_20730001 RAL-395 2680 chr3R 20734208 20734214 chr3R 20734430 20734436 5 222 10.0 7.0 8.5 0.5 228 chr3R 20734208 intergenic not near genes chr3R 20734322 intergenic not near genes chr3R 20734436 intergenic not near genes chr3R_5_20730001 chr3R_20730001 RAL-395 2681 chr3R 20734989 20735043 chr3R 20735101 20735155 28 110 7.5 8.0 7.8 3.2 166 chr3R 20734989 intergenic not near genes chr3R 20735072 intergenic not near genes chr3R 20735155 intergenic cdc2c + chr3R_28_20735001 chr3R_20735001 RAL-395 2682 chr3R 20739561 20739605 chr3R 20739705 20739749 20 144 6.5 8.0 7.2 2.4 188 chr3R 20739561 intergenic CG17267 - chr3R 20739655 intergenic CG42322 + chr3R 20739749 intergenic CG42322 + chr3R_20_20735001 chr3R_20735001 RAL-395 2683 chr3R 20771706 20771721 chr3R 20771813 20771828 9 107 0.0 16.5 8.2 1.0 122 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771767 intron,intron Syp +,Takl1 - chr3R 20771828 intron,exon Syp +,Takl1 - chr3R_9_20770001 chr3R_20770001 RAL-395 2684 chr3R 20787412 20787458 chr3R 20787529 20787575 24 117 8.5 6.5 7.5 2.8 163 chr3R 20787412 intron Syp + chr3R 20787494 intron Syp + chr3R 20787575 intron Syp + chr3R_24_20785001 chr3R_20785001 RAL-395 2685 chr3R 20848339 20848358 chr3R 20848455 20848474 5 116 5.0 14.0 9.5 0.5 135 chr3R 20848339 intergenic not near genes chr3R 20848406 intergenic not near genes chr3R 20848474 intergenic not near genes chr3R_5_20845001 chr3R_20845001 RAL-395 2686 chr3R 20850062 20850109 chr3R 20850173 20850220 10 111 0.0 3.5 1.8 3.6 158 chr3R 20850062 intergenic RpS30 + chr3R 20850141 intergenic RpS30 + chr3R 20850220 intergenic RpS30 + chr3R_10_20850001 chr3R_20850001 RAL-395 2687 chr3R 20854445 20854510 chr3R 20859266 20859326 Doc 20 4819 0.0 11.5 5.8 2.9 4881 chr3R 20854445 intron Ir93a - chr3R 20856886 intron Ir93a - chr3R 20859326 exon Ir93a - chr3R_20_20855001 chr3R_20855001 RAL-395 2688 chr3R 20870225 20870284 chr3R 20870336 20870395 40 111 8.5 9.5 9.0 4.0 170 chr3R 20870225 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870395 intergenic not near genes chr3R_40_20870001 chr3R_20870001 RAL-395 2689 chr3R 20878235 20878260 chr3R 20878477 20878503 13 243 9.0 0.0 4.5 2.4 268 chr3R 20878235 exon TotZ + chr3R 20878369 intergenic TotZ +,CR44048 - chr3R 20878503 3` UTR CR44048 - chr3R_13_20875001 chr3R_20875001 RAL-395 2690 chr3R 20994925 20994981 chr3R 20995037 20995078 27 102 6.5 8.0 7.2 3.3 153 chr3R 20994925 intron Calx + chr3R 20995002 intron Calx + chr3R 20995078 intron Calx + chr3R_27_20995001 chr3R_20995001 RAL-395 2691 chr3R 21020382 21020432 chr3R 21020484 21020534 31 102 7.5 11.0 9.2 3.0 152 chr3R 21020382 3` UTR Rlip + chr3R 21020458 3` UTR Rlip + chr3R 21020534 3` UTR Rlip + chr3R_31_21020001 chr3R_21020001 RAL-395 2692 chr3R 21041074 21041129 chr3R 21041253 21041308 29 178 8.5 9.0 8.8 3.0 234 chr3R 21041074 exon Dhc93AB - chr3R 21041191 intron Dhc93AB - chr3R 21041308 intron Dhc93AB - chr3R_29_21040001 chr3R_21040001 RAL-395 2693 chr3R 21074808 21074815 chr3R 21075055 21075062 6 247 7.0 15.0 11.0 0.5 254 chr3R 21074808 intron dmrt93B + chr3R 21074935 intron dmrt93B + chr3R 21075062 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-395 2694 chr3R 21074816 21074823 chr3R 21075048 21075070 8 245 5.0 14.0 9.5 0.8 254 chr3R 21074816 intron dmrt93B + chr3R 21074943 intron dmrt93B + chr3R 21075070 intron dmrt93B + chr3R_8_21070001 chr3R_21070001 RAL-395 2695 chr3R 21076291 21076332 chr3R 21076395 21076437 13 105 1.0 3.0 2.0 4.3 146 chr3R 21076291 exon dmrt93B + chr3R 21076364 intron dmrt93B + chr3R 21076437 intron dmrt93B + chr3R_13_21075001 chr3R_21075001 RAL-395 2696 chr3R 21108013 21108052 chr3R 21108300 21108339 11 286 7.0 3.0 5.0 1.8 326 chr3R 21108013 intergenic Sec15 -,rtet + chr3R 21108176 intergenic Sec15 -,rtet + chr3R 21108339 intergenic rtet +,Sec15 - chr3R_11_21105001 chr3R_21105001 RAL-395 2697 chr3R 21132607 21132646 chr3R 21132716 21132755 8 109 7.5 0.0 3.8 1.7 148 chr3R 21132607 3` UTR Ice2 + chr3R 21132681 3` UTR Ice2 + chr3R 21132755 exon CG7009 - chr3R_8_21130001 chr3R_21130001 RAL-395 2698 chr3R 21141655 21141707 chr3R 21150158 21150210 Tirant 21 8506 11.5 6.5 9.0 2.1 8555 chr3R 21141655 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150210 intron SNF4Agamma + chr3R_21_21145001 chr3R_21145001 RAL-395 2699 chr3R 21154527 21154583 chr3R 21154758 21154824 22 240 9.5 0.0 4.8 3.8 297 chr3R 21154527 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154824 intron SNF4Agamma + chr3R_22_21150001 chr3R_21150001 RAL-395 2700 chr3R 21161681 21161736 chr3R 21161915 21161970 31 233 7.5 6.5 7.0 3.9 289 chr3R 21161681 intron SNF4Agamma + chr3R 21161826 intron SNF4Agamma + chr3R 21161970 intron SNF4Agamma + chr3R_31_21160001 chr3R_21160001 RAL-395 2701 chr3R 21163249 21163272 chr3R 21163353 21163373 11 103 7.5 13.0 10.2 1.0 124 chr3R 21163249 intron SNF4Agamma + chr3R 21163311 intron SNF4Agamma + chr3R 21163373 intron SNF4Agamma + chr3R_11_21160001 chr3R_21160001 RAL-395 2702 chr3R 21188039 21188227 chr3R 21188175 21188340 20 124 0.0 0.0 0.0 20.0 301 chr3R 21188039 intron SNF4Agamma + chr3R 21188190 intron SNF4Agamma + chr3R 21188340 intron SNF4Agamma + chr3R_20_21185001 chr3R_21185001 RAL-395 2703 chr3R 21189309 21189354 chr3R 21189440 21189440 7 125 8.0 0.0 4.0 1.4 131 chr3R 21189309 intron SNF4Agamma + chr3R 21189374 intron SNF4Agamma + chr3R 21189440 intron SNF4Agamma + chr3R_7_21185001 chr3R_21185001 RAL-395 2704 chr3R 21252675 21252707 chr3R 21252799 21252832 15 124 15.0 7.5 11.2 1.2 157 chr3R 21252675 intron ETHR + chr3R 21252754 intron ETHR + chr3R 21252832 intron ETHR + chr3R_15_21250001 chr3R_21250001 RAL-395 2705 chr3R 21252708 21252718 chr3R 21252796 21252837 9 120 14.0 7.0 10.5 0.8 129 chr3R 21252708 intron ETHR + chr3R 21252772 intron ETHR + chr3R 21252837 intron ETHR + chr3R_9_21250001 chr3R_21250001 RAL-395 2706 chr3R 21322949 21322972 chr3R 21323054 21323077 10 105 17.5 3.0 10.2 0.9 128 chr3R 21322949 exon CG16791 - chr3R 21323013 intron CG16791 - chr3R 21323077 intron CG16791 - chr3R_10_21320001 chr3R_21320001 RAL-395 2707 chr3R 21461014 21461017 chr3R 21461130 21461133 6 116 12.5 0.0 6.2 0.8 119 chr3R 21461014 intergenic not near genes chr3R 21461074 intergenic not near genes chr3R 21461133 intergenic not near genes chr3R_6_21460001 chr3R_21460001 RAL-395 2708 chr3R 21464395 21464429 chr3R 21464506 21464538 5 110 2.5 9.5 6.0 0.7 143 chr3R 21464395 intergenic not near genes chr3R 21464466 intergenic not near genes chr3R 21464538 intergenic not near genes chr3R_5_21460001 chr3R_21460001 RAL-395 2709 chr3R 21471993 21472033 chr3R 21472100 21472135 22 107 10.5 10.5 10.5 1.9 142 chr3R 21471993 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472135 intergenic not near genes chr3R_22_21470001 chr3R_21470001 RAL-395 2710 chr3R 21481360 21481368 chr3R 21481477 21481485 6 117 22.5 0.0 11.2 0.5 125 chr3R 21481360 intergenic not near genes chr3R 21481422 intergenic not near genes chr3R 21481485 intergenic not near genes chr3R_6_21480001 chr3R_21480001 RAL-395 2711 chr3R 21502940 21502984 chr3R 21503111 21503156 21 171 6.0 0.0 3.0 5.2 216 chr3R 21502940 intron C15 + chr3R 21503048 intron C15 + chr3R 21503156 intron C15 + chr3R_21_21500001 chr3R_21500001 RAL-395 2712 chr3R 21519963 21520133 chr3R 21520090 21520253 25 123 1.5 1.5 1.5 10.0 290 chr3R 21519963 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520253 intergenic not near genes chr3R_25_21520001 chr3R_21520001 RAL-395 2713 chr3R 21581753 21581764 chr3R 21581938 21581947 6 185 11.0 0.0 5.5 0.9 194 chr3R 21581753 intron InR - chr3R 21581850 intron InR - chr3R 21581947 intron InR - chr3R_6_21580001 chr3R_21580001 RAL-395 2714 chr3R 21582972 21583018 chr3R 21583098 21583145 25 125 5.0 8.0 6.5 3.3 173 chr3R 21582972 intron InR - chr3R 21583058 intron InR - chr3R 21583145 intron InR - chr3R_25_21580001 chr3R_21580001 RAL-395 2715 chr3R 21652534 21652571 chr3R 21652640 21652677 9 106 0.0 12.5 6.2 1.2 143 chr3R 21652534 intron E2f - chr3R 21652606 intron E2f - chr3R 21652677 intron E2f - chr3R_9_21650001 chr3R_21650001 RAL-395 2716 chr3R 21658698 21658748 chr3R 21658949 21659008 32 258 10.0 5.5 7.8 3.6 310 chr3R 21658698 intron E2f - chr3R 21658853 intron E2f - chr3R 21659008 intron E2f - chr3R_32_21655001 chr3R_21655001 RAL-395 2717 chr3R 21663778 21663825 chr3R 21663891 21663938 19 113 6.0 6.5 6.2 2.6 160 chr3R 21663778 intergenic not near genes chr3R 21663858 intergenic not near genes chr3R 21663938 intergenic CG15497 + chr3R_19_21660001 chr3R_21660001 RAL-395 2718 chr3R 21666947 21666956 chr3R 21667077 21667086 4 130 15.5 1.0 8.2 0.4 139 chr3R 21666947 intron DNApol-alpha180 - chr3R 21667016 intron DNApol-alpha180 - chr3R 21667086 intron DNApol-alpha180 - chr3R_4_21665001 chr3R_21665001 RAL-395 2719 chr3R 21672712 21672729 chr3R 21672828 21672845 13 115 13.5 12.5 13.0 0.9 133 chr3R 21672712 3` UTR CG31176 - chr3R 21672778 3` UTR CG31176 - chr3R 21672845 3` UTR CG31176 - chr3R_13_21670001 chr3R_21670001 RAL-395 2720 chr3R 21734839 21734947 chr3R 21734941 21735063 10 103 0.0 0.0 0.0 10.0 224 chr3R 21734839 intergenic not near genes chr3R 21734951 intergenic not near genes chr3R 21735063 intergenic not near genes chr3R_10_21730001 chr3R_21730001 RAL-395 2721 chr3R 21761100 21761153 chr3R 21768518 21768571 mdg1 28 7417 8.5 12.5 10.5 2.4 7471 chr3R 21761100 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768571 exon CG42335 + chr3R_28_21760001 chr3R_21760001 RAL-395 2722 chr3R 21784831 21784889 chr3R 21784955 21785013 13 122 6.5 3.5 5.0 2.2 182 chr3R 21784831 3` UTR,3` UTR CASK -,CRG - chr3R 21784922 3` UTR,3` UTR CASK -,CRG - chr3R 21785013 3` UTR,3` UTR CASK -,CRG - chr3R_13_21780001 chr3R_21780001 RAL-395 2723 chr3R 21803067 21803071 chr3R 21803249 21803253 4 182 21.0 0.0 10.5 0.3 186 chr3R 21803067 intron CASK - chr3R 21803160 intron CASK - chr3R 21803253 intron CASK - chr3R_4_21800001 chr3R_21800001 RAL-395 2724 chr3R 21815068 21815101 chr3R 21815171 21815204 10 103 4.0 11.0 7.5 1.2 136 chr3R 21815068 intron CASK - chr3R 21815136 intron CASK - chr3R 21815204 intron CASK - chr3R_10_21815001 chr3R_21815001 RAL-395 2725 chr3R 21836516 21836571 chr3R 21836629 21836689 38 118 0.0 7.0 3.5 8.4 173 chr3R 21836516 intergenic not near genes chr3R 21836602 intergenic not near genes chr3R 21836689 intergenic not near genes chr3R_38_21835001 chr3R_21835001 RAL-395 2726 chr3R 21883945 21883990 chr3R 21884048 21884094 22 104 2.0 8.0 5.0 3.7 149 chr3R 21883945 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884020 intron,3` UTR CR45046 -,fit - chr3R 21884094 3` UTR,exon CR45046 -,fit - chr3R_22_21880001 chr3R_21880001 RAL-395 2727 chr3R 21903613 21903633 chr3R 21903736 21903756 7 123 0.0 11.0 5.5 1.1 143 chr3R 21903613 intron CG6678 + chr3R 21903684 intron CG6678 + chr3R 21903756 intron CG6678 + chr3R_7_21900001 chr3R_21900001 RAL-395 2728 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 38.5 35.0 36.8 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-395 2729 chr3R 9620954 9620957 chr3R 21907534 21907534 10 12286578 42.0 35.0 38.5 0.3 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_10_15760001 chr3R_15760001 RAL-395 2730 chr3R 21907534 21907534 chr3R 28831801 28831802 26 6924267 35.5 44.5 40.0 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-395 2731 chr3R 8339244 8339247 chr3R 21907535 21907535 7 13568289 38.5 35.0 36.8 0.2 13568291 chr3R 8339244 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-395 2732 chr3R 9620956 9620957 chr3R 21907535 21907535 7 12286579 42.0 35.0 38.5 0.2 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-395 2733 chr3R 13693028 13693028 chr3R 21907535 21907535 4 8214507 43.0 35.0 39.0 0.1 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-395 2734 chr3R 21907535 21907535 chr3R 28831801 28831802 45 6924267 36.0 44.5 40.2 1.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-395 2735 chr3R 8339246 8339247 chr3R 21907536 21907536 4 13568289 38.5 35.0 36.8 0.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-395 2736 chr3R 21907536 21907536 chr3R 28831801 28831802 25 6924266 36.0 44.5 40.2 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-395 2737 chr3R 21923988 21924048 chr3R 21924101 21924164 22 115 6.5 0.0 3.2 5.2 176 chr3R 21923988 intergenic not near genes chr3R 21924076 intergenic not near genes chr3R 21924164 intergenic not near genes chr3R_22_21920001 chr3R_21920001 RAL-395 2738 chr3R 21937210 21937230 chr3R 21937313 21937313 9 101 7.0 15.0 11.0 0.8 103 chr3R 21937210 intergenic not near genes chr3R 21937262 intergenic not near genes chr3R 21937313 intergenic not near genes chr3R_9_21935001 chr3R_21935001 RAL-395 2739 chr3R 21989437 21989442 chr3R 21989734 21989739 5 297 4.0 15.0 9.5 0.5 302 chr3R 21989437 intron Eip93F + chr3R 21989588 intron Eip93F + chr3R 21989739 intron Eip93F + chr3R_5_21985001 chr3R_21985001 RAL-395 2740 chr3R 22003221 22003279 chr3R 22003568 22003626 31 345 7.0 10.5 8.8 3.2 405 chr3R 22003221 intron Eip93F + chr3R 22003424 intron Eip93F + chr3R 22003626 intron Eip93F + chr3R_31_22000001 chr3R_22000001 RAL-395 2741 chr3R 22025829 22025888 chr3R 22025945 22026002 15 113 0.0 7.0 3.5 3.3 173 chr3R 22025829 intergenic Cchl -,CG6028 - chr3R 22025916 intergenic Cchl -,CG6028 - chr3R 22026002 3` UTR Cchl - chr3R_15_22025001 chr3R_22025001 RAL-395 2742 chr3R 22083625 22083679 chr3R 22083954 22084002 42 326 7.5 8.5 8.0 4.7 377 chr3R 22083625 intergenic CG13408 + chr3R 22083814 intergenic CG13408 + chr3R 22084002 intergenic not near genes chr3R_42_22080001 chr3R_22080001 RAL-395 2743 chr3R 22084605 22084624 chr3R 22084720 22084739 13 115 0.0 13.5 6.8 1.7 134 chr3R 22084605 intergenic not near genes chr3R 22084672 intergenic not near genes chr3R 22084739 intergenic not near genes chr3R_13_22080001 chr3R_22080001 RAL-395 2744 chr3R 22108330 22108387 chr3R 22108588 22108634 32 257 8.0 8.5 8.2 3.5 304 chr3R 22108330 intron CG5778 - chr3R 22108482 intron CG5778 - chr3R 22108634 intron CG5778 - chr3R_32_22105001 chr3R_22105001 RAL-395 2745 chr3R 22234657 22234714 chr3R 22236002 22236059 pogo 29 1343 5.5 8.5 7.0 3.6 1402 chr3R 22234657 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236059 intron SKIP + chr3R_29_22235001 chr3R_22235001 RAL-395 2746 chr3R 22239470 22239524 chr3R 22248555 22248598 roo 14 9076 6.5 3.0 4.8 2.4 9128 chr3R 22239470 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248598 intron SKIP + chr3R_14_22240001 chr3R_22240001 RAL-395 2747 chr3R 22349997 22350029 chr3R 22350180 22350212 15 183 8.0 0.0 4.0 3.0 215 chr3R 22349997 intergenic not near genes chr3R 22350104 intergenic not near genes chr3R 22350212 intergenic not near genes chr3R_15_22350001 chr3R_22350001 RAL-395 2748 chr3R 22433074 22433095 chr3R 22433200 22433221 19 126 16.5 22.5 19.5 0.9 147 chr3R 22433074 intron CG13847 - chr3R 22433148 intron CG13847 - chr3R 22433221 intron CG13847 - chr3R_19_22430001 chr3R_22430001 RAL-395 2749 chr3R 22450522 22450570 chr3R 22453187 22453236 NOF 29 2666 11.5 11.0 11.2 2.4 2714 chr3R 22450522 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453236 intron CG34376 + chr3R_29_22450001 chr3R_22450001 RAL-395 2750 chr3R 22534358 22534415 chr3R 22534479 22534536 41 120 6.0 8.5 7.2 5.0 178 chr3R 22534358 intron CG5326 - chr3R 22534447 intron CG5326 - chr3R 22534536 intron CG5326 - chr3R_41_22530001 chr3R_22530001 RAL-395 2751 chr3R 22572215 22572266 chr3R 22572329 22572380 20 114 9.0 11.5 10.2 1.8 165 chr3R 22572215 intron CG33110 + chr3R 22572298 intron CG33110 + chr3R 22572380 intron CG33110 + chr3R_20_22570001 chr3R_22570001 RAL-395 2752 chr3R 22619814 22619871 chr3R 22620027 22620084 18 213 2.5 7.5 5.0 3.0 270 chr3R 22619814 3` UTR mRpL45 + chr3R 22619949 intergenic loco -,mRpL45 + chr3R 22620084 3` UTR loco - chr3R_18_22615001 chr3R_22615001 RAL-395 2753 chr3R 22769071 22769124 chr3R 22769173 22769227 30 102 11.5 11.0 11.2 2.5 156 chr3R 22769071 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769149 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769227 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_30_22765001 chr3R_22765001 RAL-395 2754 chr3R 22794485 22794535 chr3R 22794588 22794638 29 103 5.5 8.0 6.8 3.7 153 chr3R 22794485 intergenic CG7029 + chr3R 22794562 intergenic not near genes chr3R 22794638 intergenic not near genes chr3R_29_22790001 chr3R_22790001 RAL-395 2755 chr3R 22813135 22813178 chr3R 22813237 22813283 18 103 3.5 8.5 6.0 2.6 148 chr3R 22813135 intergenic not near genes chr3R 22813209 intergenic not near genes chr3R 22813283 intergenic not near genes chr3R_18_22810001 chr3R_22810001 RAL-395 2756 chr3R 22818074 22818132 chr3R 22818191 22818249 34 112 9.0 13.0 11.0 2.8 175 chr3R 22818074 intergenic not near genes chr3R 22818162 intergenic not near genes chr3R 22818249 intergenic not near genes chr3R_34_22815001 chr3R_22815001 RAL-395 2757 chr3R 22829767 22829814 chr3R 22829875 22829922 21 108 2.0 6.5 4.2 4.0 155 chr3R 22829767 intergenic not near genes chr3R 22829844 intergenic not near genes chr3R 22829922 intergenic not near genes chr3R_21_22825001 chr3R_22825001 RAL-395 2758 chr3R 22871408 22871457 chr3R 22871566 22871616 26 158 8.5 6.5 7.5 3.1 208 chr3R 22871408 intergenic not near genes chr3R 22871512 intergenic not near genes chr3R 22871616 intergenic not near genes chr3R_26_22870001 chr3R_22870001 RAL-395 2759 chr3R 22877272 22877326 chr3R 22877426 22877480 28 152 8.5 5.5 7.0 3.5 208 chr3R 22877272 intergenic not near genes chr3R 22877376 intergenic not near genes chr3R 22877480 intergenic not near genes chr3R_28_22875001 chr3R_22875001 RAL-395 2760 chr3R 22913187 22913242 chr3R 22913285 22913344 36 101 4.5 6.0 5.2 5.8 157 chr3R 22913187 intron klg + chr3R 22913266 intron klg + chr3R 22913344 intron klg + chr3R_36_22910001 chr3R_22910001 RAL-395 2761 chr3R 22919133 22919155 chr3R 22919256 22919277 15 123 17.0 15.5 16.2 0.9 144 chr3R 22919133 intron klg + chr3R 22919205 intron klg + chr3R 22919277 intron klg + chr3R_15_22915001 chr3R_22915001 RAL-395 2762 chr3R 22919158 22919189 chr3R 22919252 22919311 19 118 6.5 14.5 10.5 1.7 153 chr3R 22919158 intron klg + chr3R 22919234 intron klg + chr3R 22919311 intron klg + chr3R_19_22915001 chr3R_22915001 RAL-395 2763 chr3R 22927850 22927901 chr3R 22927970 22928022 40 120 11.5 11.0 11.2 3.3 172 chr3R 22927850 intron klg + chr3R 22927936 intron klg + chr3R 22928022 intron klg + chr3R_40_22925001 chr3R_22925001 RAL-395 2764 chr3R 22945938 22945973 chr3R 22946044 22946083 6 107 2.0 6.5 4.2 1.2 145 chr3R 22945938 intron klg + chr3R 22946010 intron klg + chr3R 22946083 intron klg + chr3R_6_22945001 chr3R_22945001 RAL-395 2765 chr3R 23060254 23060260 chr3R 23060369 23060376 8 116 0.0 21.0 10.5 0.7 122 chr3R 23060254 intron sav - chr3R 23060315 intron sav - chr3R 23060376 intron sav - chr3R_8_23060001 chr3R_23060001 RAL-395 2766 chr3R 23070633 23070697 chr3R 23070739 23070801 5 105 0.0 0.0 0.0 5.0 168 chr3R 23070633 3` UTR CG13830 - chr3R 23070717 3` UTR CG13830 - chr3R 23070801 3` UTR CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-395 2767 chr3R 23197936 23197971 chr3R 23198041 23198065 13 103 8.0 7.0 7.5 1.5 129 chr3R 23197936 exon cnc - chr3R 23198000 intron cnc - chr3R 23198065 intron cnc - chr3R_13_23195001 chr3R_23195001 RAL-395 2768 chr3R 23319658 23319676 chr3R 23319763 23319781 10 105 0.0 8.5 4.2 1.9 123 chr3R 23319658 intron pnt - chr3R 23319720 intron pnt - chr3R 23319781 intron pnt - chr3R_10_23315001 chr3R_23315001 RAL-395 2769 chr3R 23356976 23357007 chr3R 23357088 23357119 7 112 13.5 5.5 9.5 0.7 143 chr3R 23356976 intron Sec13 + chr3R 23357048 intron Sec13 + chr3R 23357119 intron Sec13 + chr3R_7_23355001 chr3R_23355001 RAL-395 2770 chr3R 23385563 23385596 chr3R 23385711 23385744 13 147 10.0 5.0 7.5 1.5 181 chr3R 23385563 intergenic not near genes chr3R 23385654 intergenic not near genes chr3R 23385744 intergenic not near genes chr3R_13_23385001 chr3R_23385001 RAL-395 2771 chr3R 23450197 23450250 chr3R 23450400 23450453 28 202 6.0 10.5 8.2 3.0 256 chr3R 23450197 intron CG4374 - chr3R 23450325 intron CG4374 - chr3R 23450453 intron CG4374 - chr3R_28_23450001 chr3R_23450001 RAL-395 2772 chr3R 23558372 23558429 chr3R 23560179 23560218 Bari1 24 1806 6.0 6.5 6.2 3.3 1846 chr3R 23558372 intron beat-IV + chr3R 23559295 intron beat-IV + chr3R 23560218 intron beat-IV + chr3R_24_23555001 chr3R_23555001 RAL-395 2773 chr3R 23570420 23570439 chr3R 23570564 23570583 11 143 19.0 10.0 14.5 0.7 163 chr3R 23570420 intron beat-IV + chr3R 23570502 intron beat-IV + chr3R 23570583 intron beat-IV + chr3R_11_23570001 chr3R_23570001 RAL-395 2774 chr3R 23570440 23570477 chr3R 23570560 23570620 15 142 6.5 8.0 7.2 1.8 180 chr3R 23570440 intron beat-IV + chr3R 23570530 intron beat-IV + chr3R 23570620 intron beat-IV + chr3R_15_23570001 chr3R_23570001 RAL-395 2775 chr3R 23684670 23684673 chr3R 23685182 23685185 roo 4 512 28.5 14.5 21.5 0.2 515 chr3R 23684670 exon CG18754 + chr3R 23684928 intron CG18754 + chr3R 23685185 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-395 2776 chr3R 23684675 23684723 chr3R 23685181 23685235 roo 34 512 14.0 14.5 14.2 2.2 560 chr3R 23684675 exon CG18754 + chr3R 23684955 intron CG18754 + chr3R 23685235 exon CG18754 + chr3R_34_23680001 chr3R_23680001 RAL-395 2777 chr3R 23688447 23688500 chr3R 23688564 23688617 14 114 9.0 0.5 4.8 2.4 170 chr3R 23688447 intergenic SPE + chr3R 23688532 intergenic SPE +,CG10254 - chr3R 23688617 intergenic CG10254 -,SPE + chr3R_14_23685001 chr3R_23685001 RAL-395 2778 chr3R 23729268 23729314 chr3R 23729374 23729387 31 106 11.0 0.5 5.8 4.6 119 chr3R 23729268 intron CG10365 + chr3R 23729328 intron CG10365 + chr3R 23729387 intron CG10365 + chr3R_31_23725001 chr3R_23725001 RAL-395 2779 chr3R 23835383 23835434 chr3R 23844559 23844608 roo 8 9172 6.5 0.0 3.2 1.9 9225 chr3R 23835383 intron CG34355 + chr3R 23839996 intron CG34355 + chr3R 23844608 intron CG34355 + chr3R_8_23835001 chr3R_23835001 RAL-395 2780 chr3R 23851065 23851088 chr3R 23858758 23858781 opus 7 7693 3.0 8.5 5.8 1.0 7716 chr3R 23851065 3` UTR CG34355 + chr3R 23854923 intergenic not near genes chr3R 23858781 intergenic not near genes chr3R_7_23850001 chr3R_23850001 RAL-395 2781 chr3R 23865006 23865057 chr3R 23865121 23865172 30 113 12.5 7.0 9.8 2.8 166 chr3R 23865006 intron Pli - chr3R 23865089 intron Pli - chr3R 23865172 intron Pli - chr3R_30_23865001 chr3R_23865001 RAL-395 2782 chr3R 23873960 23873969 chr3R 23874065 23874078 8 108 16.5 23.0 19.8 0.4 118 chr3R 23873960 intron Pli - chr3R 23874019 intron Pli - chr3R 23874078 intron Pli - chr3R_8_23870001 chr3R_23870001 RAL-395 2783 chr3R 23908124 23908180 chr3R 23909674 23909730 29 1549 7.5 9.5 8.5 3.1 1606 chr3R 23908124 intron sba - chr3R 23908927 intron sba - chr3R 23909730 intron sba - chr3R_29_23905001 chr3R_23905001 RAL-395 2784 chr3R 23944884 23944936 chr3R 23944995 23945047 27 111 4.0 10.5 7.2 3.3 163 chr3R 23944884 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945047 exon CG12268 - chr3R_27_23940001 chr3R_23940001 RAL-395 2785 chr3R 23967188 23967245 chr3R 23967781 23967839 26 592 8.5 7.5 8.0 2.9 651 chr3R 23967188 intron CG31140 + chr3R 23967514 intron CG31140 + chr3R 23967839 intron CG31140 + chr3R_26_23965001 chr3R_23965001 RAL-395 2786 chr3R 24011643 24011679 chr3R 24011752 24011788 10 108 1.5 10.0 5.8 1.5 145 chr3R 24011643 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011788 intron KrT95D - chr3R_10_24010001 chr3R_24010001 RAL-395 2787 chr3R 24023358 24023363 chr3R 24023463 24023468 6 105 9.0 0.0 4.5 1.1 110 chr3R 24023358 intron KrT95D - chr3R 24023413 intron KrT95D - chr3R 24023468 intron KrT95D - chr3R_6_24020001 chr3R_24020001 RAL-395 2788 chr3R 24072061 24072110 chr3R 24072525 24072562 jockey 36 463 16.0 22.0 19.0 1.8 501 chr3R 24072061 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072562 intron 4EHP - chr3R_36_24070001 chr3R_24070001 RAL-395 2789 chr3R 24074373 24074429 chr3R 24074487 24074543 28 111 7.5 8.0 7.8 3.2 170 chr3R 24074373 intron 4EHP - chr3R 24074458 intron 4EHP - chr3R 24074543 intron 4EHP - chr3R_28_24070001 chr3R_24070001 RAL-395 2790 chr3R 24076899 24076942 chr3R 24078392 24078434 hobo 20 1493 11.5 11.5 11.5 1.6 1535 chr3R 24076899 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078434 intron 4EHP - chr3R_20_24075001 chr3R_24075001 RAL-395 2791 chr3R 24199714 24199769 chr3R 24199820 24199875 32 106 4.5 9.0 6.8 4.1 161 chr3R 24199714 intron twin - chr3R 24199794 intron twin - chr3R 24199875 intron twin - chr3R_32_24195001 chr3R_24195001 RAL-395 2792 chr3R 24207196 24207240 chr3R 24212298 24212342 flea 17 5102 12.0 6.0 9.0 1.7 5146 chr3R 24207196 intron twin - chr3R 24209769 intron twin - chr3R 24212342 intron twin - chr3R_17_24205001 chr3R_24205001 RAL-395 2793 chr3R 21907534 21907536 chr3R 24389465 24389465 15 2481930 36.0 31.0 33.5 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_15_23145001 chr3R_23145001 RAL-395 2794 chr3R 24431574 24431627 chr3R 24431679 24431732 25 104 7.5 0.0 3.8 5.2 158 chr3R 24431574 intron nAChRalpha1 - chr3R 24431653 intron nAChRalpha1 - chr3R 24431732 intron nAChRalpha1 - chr3R_25_24430001 chr3R_24430001 RAL-395 2795 chr3R 24434215 24434272 chr3R 24434319 24434376 18 101 1.0 3.0 2.0 6.0 161 chr3R 24434215 intron nAChRalpha1 - chr3R 24434296 intron nAChRalpha1 - chr3R 24434376 intron nAChRalpha1 - chr3R_18_24430001 chr3R_24430001 RAL-395 2796 chr3R 24447721 24447755 chr3R 24447834 24447868 7 113 0.0 11.5 5.8 1.0 147 chr3R 24447721 intron nAChRalpha1 - chr3R 24447794 intron nAChRalpha1 - chr3R 24447868 intron nAChRalpha1 - chr3R_7_24445001 chr3R_24445001 RAL-395 2797 chr3R 24493254 24493304 chr3R 24493509 24493559 BS 28 253 7.5 11.0 9.2 2.7 305 chr3R 24493254 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493559 intergenic not near genes chr3R_28_24490001 chr3R_24490001 RAL-395 2798 chr3R 24527778 24527830 chr3R 24527895 24527947 17 117 5.0 2.0 3.5 3.8 169 chr3R 24527778 intergenic CG13618 +,CG6607 + chr3R 24527862 intergenic CG6607 +,CG13618 + chr3R 24527947 intergenic CG6607 +,CG13618 + chr3R_17_24525001 chr3R_24525001 RAL-395 2799 chr3R 24594654 24594668 chr3R 24594920 24594934 pogo 9 266 6.0 19.0 12.5 0.7 280 chr3R 24594654 intron mld + chr3R 24594794 intron mld + chr3R 24594934 intron mld + chr3R_9_24590001 chr3R_24590001 RAL-395 2800 chr3R 24605537 24605557 chr3R 24605659 24605662 10 120 16.5 23.0 19.8 0.5 125 chr3R 24605537 intron mld + chr3R 24605600 intron mld + chr3R 24605662 intron mld + chr3R_10_24605001 chr3R_24605001 RAL-395 2801 chr3R 24624368 24624383 chr3R 24624478 24624498 15 115 5.5 14.5 10.0 1.4 130 chr3R 24624368 intron Syx18 - chr3R 24624433 intron Syx18 - chr3R 24624498 exon Syx18 - chr3R_15_24620001 chr3R_24620001 RAL-395 2802 chr3R 24635624 24635678 chr3R 24635735 24635790 19 112 4.5 4.5 4.5 3.5 166 chr3R 24635624 3` UTR puf - chr3R 24635707 3` UTR puf - chr3R 24635790 3` UTR puf - chr3R_19_24635001 chr3R_24635001 RAL-395 2803 chr3R 24667581 24667614 chr3R 24667684 24667713 14 103 8.5 0.0 4.2 2.7 132 chr3R 24667581 intron slo + chr3R 24667647 intron slo + chr3R 24667713 intron slo + chr3R_14_24665001 chr3R_24665001 RAL-395 2804 chr3R 24730064 24730097 chr3R 24732468 24732501 Doc 21 2403 12.5 0.0 6.2 2.9 2437 chr3R 24730064 intron tok + chr3R 24731282 intron tok + chr3R 24732501 intron tok + chr3R_21_24730001 chr3R_24730001 RAL-395 2805 chr3R 24776712 24776769 chr3R 24776814 24776871 31 102 8.5 13.5 11.0 2.6 159 chr3R 24776712 intron CG42331 + chr3R 24776792 intron CG42331 + chr3R 24776871 intron CG42331 + chr3R_31_24775001 chr3R_24775001 RAL-395 2806 chr3R 24842076 24842134 chr3R 24842188 24842246 32 112 7.5 6.0 6.8 4.1 170 chr3R 24842076 5` UTR Esp + chr3R 24842161 5` UTR Esp + chr3R 24842246 5` UTR Esp + chr3R_32_24840001 chr3R_24840001 RAL-395 2807 chr3R 24912458 24912511 chr3R 24912565 24912619 24 106 5.5 7.0 6.2 3.3 161 chr3R 24912458 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912619 intergenic CR44267 + chr3R_24_24910001 chr3R_24910001 RAL-395 2808 chr3R 24927108 24927151 chr3R 24931925 24931968 Doc 30 4817 13.0 14.5 13.8 2.0 4860 chr3R 24927108 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931968 intergenic CG11771 + chr3R_30_24925001 chr3R_24925001 RAL-395 2809 chr3R 24974886 24974935 chr3R 24974991 24975039 39 105 9.0 11.0 10.0 3.5 153 chr3R 24974886 intergenic not near genes chr3R 24974962 intergenic not near genes chr3R 24975039 intergenic not near genes chr3R_39_24970001 chr3R_24970001 RAL-395 2810 chr3R 25053091 25053165 chr3R 25053215 25053276 29 117 0.0 9.0 4.5 5.3 185 chr3R 25053091 intergenic CG11791 +,CG31109 - chr3R 25053184 intergenic CG11791 +,CG31109 - chr3R 25053276 intergenic CG31109 -,CG11791 + chr3R_29_25050001 chr3R_25050001 RAL-395 2811 chr3R 25072738 25072788 chr3R 25072856 25072906 22 118 5.5 13.0 9.2 2.2 168 chr3R 25072738 3` UTR CG9996 - chr3R 25072822 3` UTR CG9996 - chr3R 25072906 exon CG9996 - chr3R_22_25070001 chr3R_25070001 RAL-395 2812 chr3R 25126017 25126043 chr3R 25126637 25126662 5 619 41.5 47.0 44.2 0.1 645 chr3R 25126017 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126340 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126662 3` UTR,exon CG42503 -,Mocs2 - chr3R_5_25125001 chr3R_25125001 RAL-395 2813 chr3R 25166229 25166391 chr3R 25166335 25166491 18 104 0.5 0.0 0.2 15.0 262 chr3R 25166229 intergenic not near genes chr3R 25166360 intergenic not near genes chr3R 25166491 intergenic not near genes chr3R_18_25165001 chr3R_25165001 RAL-395 2814 chr3R 25209571 25209630 chr3R 25209679 25209738 33 107 1.0 7.5 4.2 6.3 167 chr3R 25209571 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209738 intron CG13654 + chr3R_33_25205001 chr3R_25205001 RAL-395 2815 chr3R 25302138 25302187 chr3R 25302329 25302377 22 192 44.0 30.5 37.2 0.6 239 chr3R 25302138 exon CG13659 + chr3R 25302258 exon CG13659 + chr3R 25302377 intergenic CG13659 +,CG31370 + chr3R_22_25300001 chr3R_25300001 RAL-395 2816 chr3R 25368447 25368480 chr3R 25368591 25368624 17 144 12.0 0.0 6.0 2.4 177 chr3R 25368447 intron Fur1 - chr3R 25368536 intron Fur1 - chr3R 25368624 intron Fur1 - chr3R_17_25365001 chr3R_25365001 RAL-395 2817 chr3R 25411754 25411806 chr3R 25411876 25411935 12 124 0.0 6.0 3.0 3.0 181 chr3R 25411754 intron Fur1 - chr3R 25411844 intron Fur1 - chr3R 25411935 intron Fur1 - chr3R_12_25410001 chr3R_25410001 RAL-395 2818 chr3R 7773344 7773344 chr3R 25538124 25538124 6 17764780 19.5 17.5 18.5 0.3 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_6_16655001 chr3R_16655001 RAL-395 2819 chr3R 25539606 25539631 chr3R 25539861 25539887 12 255 10.5 0.0 5.2 1.9 281 chr3R 25539606 intron msi + chr3R 25539746 intron msi + chr3R 25539887 intron msi + chr3R_12_25535001 chr3R_25535001 RAL-395 2820 chr3R 25571863 25571872 chr3R 25571977 25571986 4 114 8.0 7.5 7.8 0.5 123 chr3R 25571863 intron msi + chr3R 25571924 intron msi + chr3R 25571986 intron msi + chr3R_4_25570001 chr3R_25570001 RAL-395 2821 chr3R 25642567 25642624 chr3R 25642684 25642740 33 117 3.0 6.5 4.8 5.7 173 chr3R 25642567 intron jigr1 + chr3R 25642654 intron jigr1 + chr3R 25642740 intron jigr1 + chr3R_33_25640001 chr3R_25640001 RAL-395 2822 chr3R 25652290 25652347 chr3R 25652392 25652450 23 103 8.5 11.5 10.0 2.1 160 chr3R 25652290 intergenic not near genes chr3R 25652370 intergenic not near genes chr3R 25652450 intergenic not near genes chr3R_23_25650001 chr3R_25650001 RAL-395 2823 chr3R 25669040 25669094 chr3R 25669160 25669214 26 119 4.0 7.0 5.5 4.0 174 chr3R 25669040 intron Lgr3 + chr3R 25669127 intron Lgr3 + chr3R 25669214 exon Lgr3 + chr3R_26_25665001 chr3R_25665001 RAL-395 2824 chr3R 25671213 25671273 chr3R 25671337 25671399 17 123 6.0 3.0 4.5 3.1 186 chr3R 25671213 intron Lgr3 + chr3R 25671306 intron Lgr3 + chr3R 25671399 intron Lgr3 + chr3R_17_25670001 chr3R_25670001 RAL-395 2825 chr3R 25682512 25682568 chr3R 25682680 25682736 27 168 4.5 5.5 5.0 4.5 224 chr3R 25682512 intron CG5028 + chr3R 25682624 intron CG5028 + chr3R 25682736 intron CG5028 + chr3R_27_25680001 chr3R_25680001 RAL-395 2826 chr3R 25687498 25687518 chr3R 25687902 25687921 8 404 5.0 7.5 6.2 1.1 423 chr3R 25687498 intergenic CLS - chr3R 25687710 intergenic CLS - chr3R 25687921 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-395 2827 chr3R 25725807 25725857 chr3R 25734989 25735043 roo 26 9186 7.0 10.0 8.5 2.7 9236 chr3R 25725807 intron LpR2 - chr3R 25730425 intron LpR2 - chr3R 25735043 intron LpR2 - chr3R_26_25730001 chr3R_25730001 RAL-395 2828 chr3R 25774998 25775055 chr3R 25775107 25775165 29 109 10.0 10.0 10.0 2.6 167 chr3R 25774998 exon,5` UTR CG17197 -,CG17198 - chr3R 25775082 exon,5` UTR CG17197 -,CG17198 - chr3R 25775165 exon,5` UTR CG17197 -,CG17198 - chr3R_29_25775001 chr3R_25775001 RAL-395 2829 chr3R 25796355 25796373 chr3R 25796460 25796478 9 105 17.0 0.0 8.5 0.9 123 chr3R 25796355 intergenic CR43847 - chr3R 25796416 intergenic CR43847 - chr3R 25796478 intergenic CR43847 - chr3R_9_25795001 chr3R_25795001 RAL-395 2830 chr3R 25832674 25832721 chr3R 25841882 25841920 roo 39 9205 10.0 14.0 12.0 3.0 9246 chr3R 25832674 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841920 exon alpha4GT2 + chr3R_39_25835001 chr3R_25835001 RAL-395 2831 chr3R 25843612 25843665 chr3R 25843768 25843821 24 156 5.5 6.0 5.8 3.5 209 chr3R 25843612 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843821 intergenic CR45653 + chr3R_24_25840001 chr3R_25840001 RAL-395 2832 chr3R 25945599 25945656 chr3R 25945709 25945767 31 110 4.5 8.5 6.5 4.1 168 chr3R 25945599 intron CCAP-R - chr3R 25945683 intron CCAP-R - chr3R 25945767 intron CCAP-R - chr3R_31_25945001 chr3R_25945001 RAL-395 2833 chr3R 26020989 26021050 chr3R 26021095 26021137 33 104 8.5 9.5 9.0 3.3 148 chr3R 26020989 3` UTR CR43644 - chr3R 26021063 3` UTR CR43644 - chr3R 26021137 intergenic CR43644 - chr3R_33_26020001 chr3R_26020001 RAL-395 2834 chr3R 26060381 26060426 chr3R 26060493 26060538 24 112 15.5 9.0 12.2 1.8 157 chr3R 26060381 intron CG14544 + chr3R 26060460 intron CG14544 + chr3R 26060538 intron CG14544 + chr3R_24_26060001 chr3R_26060001 RAL-395 2835 chr3R 26093820 26093863 chr3R 26093924 26093967 25 104 7.5 11.5 9.5 2.4 147 chr3R 26093820 intron dys - chr3R 26093894 intron dys - chr3R 26093967 intron dys - chr3R_25_26090001 chr3R_26090001 RAL-395 2836 chr3R 26108804 26108817 chr3R 26117412 26117425 Tirant 8 8608 10.5 0.0 5.2 1.3 8621 chr3R 26108804 5` UTR CG31324 + chr3R 26113114 intron CG31324 + chr3R 26117425 intron CG31324 + chr3R_8_26110001 chr3R_26110001 RAL-395 2837 chr3R 26122436 26122466 chr3R 26122538 26122568 21 101 12.5 10.0 11.2 1.7 132 chr3R 26122436 intron CG31324 + chr3R 26122502 intron CG31324 + chr3R 26122568 intron CG31324 + chr3R_21_26120001 chr3R_26120001 RAL-395 2838 chr3R 26122467 26122477 chr3R 26122537 26122578 9 98 9.0 9.5 9.2 0.9 111 chr3R 26122467 intron CG31324 + chr3R 26122522 intron CG31324 + chr3R 26122578 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-395 2839 chr3R 26124601 26124645 chr3R 26128757 26128804 5 4157 37.5 24.0 30.8 0.2 4203 chr3R 26124601 exon CG31324 + chr3R 26126702 intron,5` UTR CG31324 +,CG14556 + chr3R 26128804 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-395 2840 chr3R 26126524 26126570 chr3R 26126636 26126682 16 112 5.0 7.5 6.2 2.2 158 chr3R 26126524 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126682 intron,5` UTR CG31324 +,CG14556 + chr3R_16_26125001 chr3R_26125001 RAL-395 2841 chr3R 26172981 26172990 chr3R 26173086 26173095 4 105 16.5 0.5 8.5 0.4 114 chr3R 26172981 intron CG31323 + chr3R 26173038 intron CG31323 + chr3R 26173095 intron CG31323 + chr3R_4_26170001 chr3R_26170001 RAL-395 2842 chr3R 26202359 26202405 chr3R 26202518 26202564 17 158 9.0 10.5 9.8 1.6 205 chr3R 26202359 intron CR44320 + chr3R 26202462 intron CR44320 + chr3R 26202564 intron CR44320 + chr3R_17_26200001 chr3R_26200001 RAL-395 2843 chr3R 26239808 26239853 chr3R 26240145 26240188 24 335 9.0 7.5 8.2 2.6 380 chr3R 26239808 intron CR42745 + chr3R 26239998 intron CR42745 + chr3R 26240188 intron CR42745 + chr3R_24_26235001 chr3R_26235001 RAL-395 2844 chr3R 26292087 26292134 chr3R 26292193 26292240 21 106 7.0 7.5 7.2 2.6 153 chr3R 26292087 intergenic not near genes chr3R 26292164 intergenic not near genes chr3R 26292240 intergenic not near genes chr3R_21_26290001 chr3R_26290001 RAL-395 2845 chr3R 26294693 26294748 chr3R 26294797 26294852 24 104 9.5 11.5 10.5 2.1 159 chr3R 26294693 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294852 intergenic not near genes chr3R_24_26290001 chr3R_26290001 RAL-395 2846 chr3R 26319293 26319337 chr3R 26319409 26319453 18 116 10.5 6.0 8.2 2.0 160 chr3R 26319293 intron CG33970 + chr3R 26319373 intron CG33970 + chr3R 26319453 intron CG33970 + chr3R_18_26315001 chr3R_26315001 RAL-395 2847 chr3R 26326670 26326676 chr3R 26326774 26326779 4 104 9.5 10.0 9.8 0.4 109 chr3R 26326670 intron CG33970 + chr3R 26326724 intron CG33970 + chr3R 26326779 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-395 2848 chr3R 26332859 26332914 chr3R 26332974 26333029 26 115 7.0 11.0 9.0 2.6 170 chr3R 26332859 intron CG33970 + chr3R 26332944 intron CG33970 + chr3R 26333029 intron CG33970 + chr3R_26_26330001 chr3R_26330001 RAL-395 2849 chr3R 26349241 26349262 chr3R 26349361 26349384 9 121 9.5 0.0 4.8 1.6 143 chr3R 26349241 intron CG33970 + chr3R 26349312 intron CG33970 + chr3R 26349384 intron CG33970 + chr3R_9_26345001 chr3R_26345001 RAL-395 2850 chr3R 26376299 26376355 chr3R 26385485 26385514 roo 33 9184 11.5 0.5 6.0 4.7 9215 chr3R 26376299 intergenic not near genes chr3R 26380906 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_33_26380001 chr3R_26380001 RAL-395 2851 chr3R 26479123 26479179 chr3R 26479576 26479632 24 453 7.5 5.0 6.2 3.3 509 chr3R 26479123 intron plum - chr3R 26479378 intron plum - chr3R 26479632 intron plum - chr3R_24_26475001 chr3R_26475001 RAL-395 2852 chr3R 26510480 26510530 chr3R 26519567 26519617 roo 12 9087 5.5 5.0 5.2 1.9 9137 chr3R 26510480 intron plum - chr3R 26515048 intron plum - chr3R 26519617 intron,5` UTR plum -,CR45226 + chr3R_12_26515001 chr3R_26515001 RAL-395 2853 chr3R 26527068 26527120 chr3R 26527177 26527229 23 107 10.5 7.5 9.0 2.3 161 chr3R 26527068 intron plum - chr3R 26527148 intron plum - chr3R 26527229 intron plum - chr3R_23_26525001 chr3R_26525001 RAL-395 2854 chr3R 26540972 26541029 chr3R 26541077 26541134 24 105 4.5 3.0 3.8 5.0 162 chr3R 26540972 intron scrib + chr3R 26541053 intron scrib + chr3R 26541134 intron scrib + chr3R_24_26540001 chr3R_26540001 RAL-395 2855 chr3R 26558305 26558356 chr3R 26565642 26565694 Stalker4 34 7337 11.0 16.5 13.8 2.3 7389 chr3R 26558305 intron scrib + chr3R 26562000 intron scrib + chr3R 26565694 intron scrib + chr3R_34_26560001 chr3R_26560001 RAL-395 2856 chr3R 26568061 26568074 chr3R 26568168 26568182 12 108 0.0 18.0 9.0 1.2 121 chr3R 26568061 intron scrib + chr3R 26568122 intron scrib + chr3R 26568182 intron scrib + chr3R_12_26565001 chr3R_26565001 RAL-395 2857 chr3R 26607713 26607769 chr3R 26607814 26607871 29 101 10.0 7.0 8.5 3.1 158 chr3R 26607713 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607871 5` UTR CR44951 + chr3R_29_26605001 chr3R_26605001 RAL-395 2858 chr3R 26641616 26641663 chr3R 26641729 26641776 24 112 7.0 16.5 11.8 1.9 160 chr3R 26641616 intergenic not near genes chr3R 26641696 intergenic not near genes chr3R 26641776 intergenic not near genes chr3R_24_26640001 chr3R_26640001 RAL-395 2859 chr3R 26642722 26642756 chr3R 26643142 26643176 jockey 20 419 8.0 11.0 9.5 1.9 454 chr3R 26642722 intergenic not near genes chr3R 26642949 intergenic not near genes chr3R 26643176 intergenic not near genes chr3R_20_26640001 chr3R_26640001 RAL-395 2860 chr3R 26688837 26688863 chr3R 26688941 26688967 8 104 9.5 7.0 8.2 0.9 130 chr3R 26688837 intergenic not near genes chr3R 26688902 intergenic not near genes chr3R 26688967 intergenic not near genes chr3R_8_26685001 chr3R_26685001 RAL-395 2861 chr3R 26810525 26810581 chr3R 26811036 26811091 roo 19 508 7.5 6.5 7.0 2.4 566 chr3R 26810525 intron Tl + chr3R 26810808 intron Tl + chr3R 26811091 intron Tl + chr3R_19_26810001 chr3R_26810001 RAL-395 2862 chr3R 26835448 26835504 chr3R 26835555 26835611 23 105 4.0 6.5 5.2 3.7 163 chr3R 26835448 intron Tl + chr3R 26835530 intron Tl + chr3R 26835611 intron Tl + chr3R_23_26835001 chr3R_26835001 RAL-395 2863 chr3R 26845548 26845601 chr3R 26845654 26845707 23 106 10.0 7.0 8.5 2.4 159 chr3R 26845548 intron Lerp - chr3R 26845628 intron Lerp - chr3R 26845707 intron Lerp - chr3R_23_26845001 chr3R_26845001 RAL-395 2864 chr3R 26885661 26885713 chr3R 26885787 26885839 33 126 8.0 6.0 7.0 4.1 178 chr3R 26885661 intron T48 + chr3R 26885750 intron T48 + chr3R 26885839 intron T48 + chr3R_33_26885001 chr3R_26885001 RAL-395 2865 chr3R 26901480 26901527 chr3R 26901591 26901638 8 111 9.0 0.0 4.5 1.5 158 chr3R 26901480 intron T48 + chr3R 26901559 intron T48 + chr3R 26901638 intron T48 + chr3R_8_26900001 chr3R_26900001 RAL-395 2866 chr3R 27007383 27007430 chr3R 27016544 27016591 roo 22 9160 9.0 9.0 9.0 2.2 9208 chr3R 27007383 intron RYa-R + chr3R 27011987 intron RYa-R + chr3R 27016591 intron RYa-R + chr3R_22_27010001 chr3R_27010001 RAL-395 2867 chr3R 27027657 27027705 chr3R 27027767 27027813 13 108 6.0 9.5 7.8 1.5 156 chr3R 27027657 intron RYa-R + chr3R 27027735 intron RYa-R + chr3R 27027813 intron RYa-R + chr3R_13_27025001 chr3R_27025001 RAL-395 2868 chr3R 27028697 27028755 chr3R 27028802 27028860 28 105 4.0 9.0 6.5 3.7 163 chr3R 27028697 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028860 intron RYa-R + chr3R_28_27025001 chr3R_27025001 RAL-395 2869 chr3R 27038584 27038624 chr3R 27038696 27038736 22 112 7.5 8.5 8.0 2.4 152 chr3R 27038584 intron RYa-R + chr3R 27038660 intron RYa-R + chr3R 27038736 intron RYa-R + chr3R_22_27035001 chr3R_27035001 RAL-395 2870 chr3R 27077073 27077130 chr3R 27077179 27077236 26 106 8.5 6.5 7.5 3.1 163 chr3R 27077073 intron CG14257 + chr3R 27077154 intron CG14257 + chr3R 27077236 intron CG14257 + chr3R_26_27075001 chr3R_27075001 RAL-395 2871 chr3R 27140490 27140541 chr3R 27148126 27148177 412 28 7636 10.0 9.5 9.8 2.6 7687 chr3R 27140490 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148177 intron CG6051 - chr3R_28_27140001 chr3R_27140001 RAL-395 2872 chr3R 27292253 27292307 chr3R 27292390 27292445 26 136 7.5 4.5 6.0 3.7 192 chr3R 27292253 intergenic CG3348 - chr3R 27292349 intergenic CG3348 - chr3R 27292445 intergenic CG3348 - chr3R_26_27290001 chr3R_27290001 RAL-395 2873 chr3R 27315968 27316012 chr3R 27316070 27316114 14 101 9.0 6.5 7.8 1.6 146 chr3R 27315968 intron CG3339 - chr3R 27316041 intron CG3339 - chr3R 27316114 exon CG3339 - chr3R_14_27315001 chr3R_27315001 RAL-395 2874 chr3R 27329453 27329502 chr3R 27329556 27329605 11 103 5.0 5.0 5.0 1.8 152 chr3R 27329453 intergenic CG3330 - chr3R 27329529 intergenic CG3330 - chr3R 27329605 intergenic CG3330 - chr3R_11_27325001 chr3R_27325001 RAL-395 2875 chr3R 27342767 27342772 chr3R 27351374 27351379 Tirant 4 8607 15.0 6.0 10.5 0.3 8612 chr3R 27342767 intron CG42534 + chr3R 27347073 intron CG42534 + chr3R 27351379 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-395 2876 chr3R 27342777 27342820 chr3R 27351373 27351427 Tirant 25 8606 8.5 6.0 7.2 3.0 8650 chr3R 27342777 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351427 intron CG42534 + chr3R_25_27345001 chr3R_27345001 RAL-395 2877 chr3R 27385663 27385716 chr3R 27385960 27386013 31 297 6.5 9.5 8.0 3.4 350 chr3R 27385663 intron side - chr3R 27385838 intron side - chr3R 27386013 intron side - chr3R_31_27385001 chr3R_27385001 RAL-395 2878 chr3R 27452566 27452610 chr3R 27452772 27452816 23 206 6.0 4.5 5.2 3.7 250 chr3R 27452566 intergenic not near genes chr3R 27452691 intergenic not near genes chr3R 27452816 intergenic not near genes chr3R_23_27450001 chr3R_27450001 RAL-395 2879 chr3R 27492351 27492406 chr3R 27492464 27492512 21 111 8.0 6.5 7.2 2.6 161 chr3R 27492351 intergenic not near genes chr3R 27492432 intergenic not near genes chr3R 27492512 intergenic not near genes chr3R_21_27490001 chr3R_27490001 RAL-395 2880 chr3R 27496571 27496627 chr3R 27496702 27496758 24 131 4.5 10.5 7.5 2.8 187 chr3R 27496571 intergenic not near genes chr3R 27496664 intergenic not near genes chr3R 27496758 intergenic not near genes chr3R_24_27495001 chr3R_27495001 RAL-395 2881 chr3R 27506277 27506318 chr3R 27506385 27506426 15 108 3.0 10.0 6.5 2.0 149 chr3R 27506277 intergenic not near genes chr3R 27506352 intergenic not near genes chr3R 27506426 intergenic not near genes chr3R_15_27505001 chr3R_27505001 RAL-395 2882 chr3R 27511227 27511282 chr3R 27511340 27511388 29 112 9.5 6.0 7.8 3.3 161 chr3R 27511227 intergenic not near genes chr3R 27511308 intergenic not near genes chr3R 27511388 intergenic not near genes chr3R_29_27510001 chr3R_27510001 RAL-395 2883 chr3R 27521132 27521185 chr3R 27530367 27530419 roo 17 9234 4.0 6.5 5.2 2.7 9287 chr3R 27521132 intron CG12885 + chr3R 27525776 intron CG12885 + chr3R 27530419 intron CG12885 + chr3R_17_27525001 chr3R_27525001 RAL-395 2884 chr3R 27573464 27573513 chr3R 27573623 27573672 24 159 9.5 9.5 9.5 2.3 208 chr3R 27573464 intron wdb - chr3R 27573568 intron wdb - chr3R 27573672 intron wdb - chr3R_24_27570001 chr3R_27570001 RAL-395 2885 chr3R 27595025 27595085 chr3R 27595134 27595194 42 109 6.0 8.0 7.0 5.2 169 chr3R 27595025 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595194 intron CG5639 - chr3R_42_27595001 chr3R_27595001 RAL-395 2886 chr3R 25407710 25407732 chr3R 27611958 27611981 9 2204248 34.0 31.5 32.8 0.3 2204271 chr3R 25407710 intron Fur1 - chr3R 26509846 intron plum - chr3R 27611981 intron Tusp + chr3R_9_26505001 chr3R_26505001 RAL-395 2887 chr3R 27624637 27624691 chr3R 27624758 27624812 21 121 8.0 7.0 7.5 2.5 175 chr3R 27624637 intron,exon Tusp +,CG5612 - chr3R 27624724 intron,intron Tusp +,CG5612 - chr3R 27624812 intron,intron Tusp +,CG5612 - chr3R_21_27620001 chr3R_27620001 RAL-395 2888 chr3R 27627889 27627925 chr3R 27627992 27628028 20 102 13.0 15.5 14.2 1.3 139 chr3R 27627889 intron Tusp + chr3R 27627958 intron Tusp + chr3R 27628028 intron Tusp + chr3R_20_27625001 chr3R_27625001 RAL-395 2889 chr3R 27705333 27705392 chr3R 27705439 27705498 38 105 7.5 8.5 8.0 4.2 165 chr3R 27705333 exon CG12428 - chr3R 27705416 intron CG12428 - chr3R 27705498 exon CG12428 - chr3R_38_27705001 chr3R_27705001 RAL-395 2890 chr3R 27718550 27718599 chr3R 27718655 27718704 24 104 11.5 7.0 9.2 2.4 154 chr3R 27718550 intergenic not near genes chr3R 27718627 intergenic not near genes chr3R 27718704 intergenic not near genes chr3R_24_27715001 chr3R_27715001 RAL-395 2891 chr3R 27725579 27725586 chr3R 27731048 27731055 I-element 5 5469 0.0 8.0 4.0 1.0 5476 chr3R 27725579 intergenic not near genes chr3R 27728317 intergenic not near genes chr3R 27731055 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-395 2892 chr3R 27749573 27749630 chr3R 27749675 27749732 23 101 10.0 7.0 8.5 2.4 159 chr3R 27749573 intergenic not near genes chr3R 27749652 intergenic not near genes chr3R 27749732 intergenic not near genes chr3R_23_27745001 chr3R_27745001 RAL-395 2893 chr3R 27759274 27759325 chr3R 27759377 27759427 23 103 9.5 10.0 9.8 2.1 153 chr3R 27759274 intergenic not near genes chr3R 27759350 intergenic not near genes chr3R 27759427 intergenic not near genes chr3R_23_27755001 chr3R_27755001 RAL-395 2894 chr3R 27770347 27770354 chr3R 27770476 27770485 4 130 2.5 17.0 9.8 0.4 138 chr3R 27770347 intron CG34353 - chr3R 27770416 intron CG34353 - chr3R 27770485 intron CG34353 - chr3R_4_27770001 chr3R_27770001 RAL-395 2895 chr3R 27772699 27772750 chr3R 27773077 27773125 13 375 30.5 27.5 29.0 0.4 426 chr3R 27772699 intron CG34353 - chr3R 27772912 intron CG34353 - chr3R 27773125 intron CG34353 - chr3R_13_27770001 chr3R_27770001 RAL-395 2896 chr3R 27779246 27779268 chr3R 27779351 27779374 14 106 16.0 15.0 15.5 0.8 128 chr3R 27779246 exon CG34353 - chr3R 27779310 intron CG34353 - chr3R 27779374 intron CG34353 - chr3R_14_27775001 chr3R_27775001 RAL-395 2897 chr3R 27779270 27779286 chr3R 27779348 27779391 11 103 9.0 14.0 11.5 0.9 121 chr3R 27779270 exon CG34353 - chr3R 27779330 intron CG34353 - chr3R 27779391 intron CG34353 - chr3R_11_27775001 chr3R_27775001 RAL-395 2898 chr3R 27812399 27812456 chr3R 27812502 27812559 16 102 9.0 6.5 7.8 1.8 160 chr3R 27812399 intron CG34353 - chr3R 27812479 intron CG34353 - chr3R 27812559 intron CG34353 - chr3R_16_27810001 chr3R_27810001 RAL-395 2899 chr3R 27856738 27856789 chr3R 27858247 27858297 hopper2 23 1509 12.0 9.5 10.8 1.9 1559 chr3R 27856738 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858297 intron CG34353 - chr3R_23_27855001 chr3R_27855001 RAL-395 2900 chr3R 27862932 27862984 chr3R 27868263 27868315 Transpac 27 5328 10.0 9.5 9.8 2.5 5383 chr3R 27862932 intron CG34353 - chr3R 27865624 intron CG34353 - chr3R 27868315 intron CG34353 - chr3R_27_27865001 chr3R_27865001 RAL-395 2901 chr3R 27871028 27871084 chr3R 27871155 27871211 22 126 14.5 7.0 10.8 1.9 183 chr3R 27871028 intron CG34353 - chr3R 27871120 intron CG34353 - chr3R 27871211 intron CG34353 - chr3R_22_27870001 chr3R_27870001 RAL-395 2902 chr3R 27875676 27875727 chr3R 27882757 27882808 297 22 7081 13.5 13.5 13.5 1.5 7132 chr3R 27875676 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882808 intron CG34353 - chr3R_22_27875001 chr3R_27875001 RAL-395 2903 chr3R 27886421 27886452 chr3R 27886557 27886583 14 135 13.5 8.0 10.8 1.2 162 chr3R 27886421 intron CG34353 - chr3R 27886502 intron CG34353 - chr3R 27886583 intron CG34353 - chr3R_14_27885001 chr3R_27885001 RAL-395 2904 chr3R 27970812 27970815 chr3R 27970928 27970931 4 116 15.0 1.5 8.2 0.4 119 chr3R 27970812 intron betaTub97EF - chr3R 27970872 intron betaTub97EF - chr3R 27970931 intron betaTub97EF - chr3R_4_27970001 chr3R_27970001 RAL-395 2905 chr3R 27973827 27973880 chr3R 27973934 27973987 38 107 7.0 9.0 8.0 4.2 160 chr3R 27973827 intron betaTub97EF - chr3R 27973907 intron betaTub97EF - chr3R 27973987 intron betaTub97EF - chr3R_38_27970001 chr3R_27970001 RAL-395 2906 chr3R 28032609 28032663 chr3R 28032763 28032818 25 155 9.5 14.0 11.8 2.0 209 chr3R 28032609 intron CG34362 + chr3R 28032714 intron CG34362 + chr3R 28032818 intron CG34362 + chr3R_25_28030001 chr3R_28030001 RAL-395 2907 chr3R 28054417 28054475 chr3R 28054519 28054565 42 100 8.0 6.0 7.0 5.2 148 chr3R 28054417 intron CG34362 + chr3R 28054491 intron CG34362 + chr3R 28054565 intron CG34362 + chr3R_42_28050001 chr3R_28050001 RAL-395 2908 chr3R 28068477 28068524 chr3R 28073945 28073992 I-element 17 5467 0.0 10.5 5.2 2.7 5515 chr3R 28068477 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073992 intron CG34362 + chr3R_17_28070001 chr3R_28070001 RAL-395 2909 chr3R 28097647 28097667 chr3R 28097780 28097800 4 133 16.0 6.5 11.2 0.3 153 chr3R 28097647 intergenic not near genes chr3R 28097724 intergenic not near genes chr3R 28097800 intergenic not near genes chr3R_4_28095001 chr3R_28095001 RAL-395 2910 chr3R 28118836 28118875 chr3R 28118943 28118982 23 107 10.0 8.5 9.2 2.3 146 chr3R 28118836 intergenic not near genes chr3R 28118909 intergenic not near genes chr3R 28118982 intergenic not near genes chr3R_23_28115001 chr3R_28115001 RAL-395 2911 chr3R 28173646 28173702 chr3R 28181102 28181158 mdg1 24 7455 6.0 5.5 5.8 3.5 7512 chr3R 28173646 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181158 intron CG34354 + chr3R_24_28175001 chr3R_28175001 RAL-395 2912 chr3R 28215789 28215847 chr3R 28215892 28215943 27 102 3.5 6.0 4.8 4.7 154 chr3R 28215789 intron CG34354 + chr3R 28215866 intron CG34354 + chr3R 28215943 intron CG34354 + chr3R_27_28215001 chr3R_28215001 RAL-395 2913 chr3R 28253318 28253365 chr3R 28255854 28255901 jockey 14 2536 7.5 9.5 8.5 1.5 2583 chr3R 28253318 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255901 intergenic not near genes chr3R_14_28250001 chr3R_28250001 RAL-395 2914 chr3R 28262647 28262683 chr3R 28262749 28262785 20 102 7.0 10.0 8.5 2.1 138 chr3R 28262647 intergenic CG43125 - chr3R 28262716 intergenic CG43125 - chr3R 28262785 exon CG43125 - chr3R_20_28260001 chr3R_28260001 RAL-395 2915 chr3R 28282967 28283014 chr3R 28283622 28283669 32 655 14.0 12.0 13.0 2.3 702 chr3R 28282967 exon CG34436 + chr3R 28283318 exon CG34436 + chr3R 28283669 intergenic CG34437 +,CG34436 + chr3R_32_28280001 chr3R_28280001 RAL-395 2916 chr3R 28302078 28302117 chr3R 28302546 28302585 jockey 26 468 5.0 7.0 6.0 3.7 507 chr3R 28302078 intergenic not near genes chr3R 28302332 intergenic not near genes chr3R 28302585 intergenic not near genes chr3R_26_28300001 chr3R_28300001 RAL-395 2917 chr3R 28345625 28345675 chr3R 28345725 28345777 14 102 5.0 5.0 5.0 2.3 152 chr3R 28345625 intergenic Moca-cyp + chr3R 28345701 intergenic not near genes chr3R 28345777 intergenic not near genes chr3R_14_28345001 chr3R_28345001 RAL-395 2918 chr3R 28367445 28367503 chr3R 28367549 28367607 34 103 11.5 10.5 11.0 2.8 162 chr3R 28367445 intergenic not near genes chr3R 28367526 intergenic not near genes chr3R 28367607 intergenic not near genes chr3R_34_28365001 chr3R_28365001 RAL-395 2919 chr3R 28390230 28390288 chr3R 28393471 28393529 40 3242 52.5 68.5 60.5 0.7 3299 chr3R 28390230 intergenic not near genes chr3R 28391880 intergenic not near genes chr3R 28393529 intergenic not near genes chr3R_40_28390001 chr3R_28390001 RAL-395 2920 chr3R 28393675 28393731 chr3R 28393801 28393857 20 126 6.5 7.0 6.8 2.6 182 chr3R 28393675 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393857 intergenic not near genes chr3R_20_28390001 chr3R_28390001 RAL-395 2921 chr3R 28407689 28407738 chr3R 28407800 28407811 26 109 6.5 13.5 10.0 2.4 122 chr3R 28407689 intergenic not near genes chr3R 28407750 intergenic not near genes chr3R 28407811 intergenic not near genes chr3R_26_28405001 chr3R_28405001 RAL-395 2922 chr3R 28478393 28478445 chr3R 28478499 28478552 34 107 6.5 12.0 9.2 3.3 159 chr3R 28478393 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478552 intergenic not near genes chr3R_34_28475001 chr3R_28475001 RAL-395 2923 chr3R 28479139 28479168 chr3R 28479245 28479277 16 108 7.5 7.5 7.5 1.9 138 chr3R 28479139 intergenic not near genes chr3R 28479208 intergenic not near genes chr3R 28479277 intergenic not near genes chr3R_16_28475001 chr3R_28475001 RAL-395 2924 chr3R 28480299 28480325 chr3R 28480405 28480432 11 107 7.0 6.0 6.5 1.5 133 chr3R 28480299 intergenic not near genes chr3R 28480366 intergenic not near genes chr3R 28480432 intergenic not near genes chr3R_11_28480001 chr3R_28480001 RAL-395 2925 chr3R 28484591 28484647 chr3R 28485313 28485369 18 725 167.5 158.5 163.0 0.1 778 chr3R 28484591 5` UTR CG1894 + chr3R 28484980 exon CG1894 + chr3R 28485369 exon CG1894 + chr3R_18_28480001 chr3R_28480001 RAL-395 2926 chr3R 28484353 28484401 chr3R 28486244 28486292 69 1892 64.0 120.5 92.2 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_69_28485001 chr3R_28485001 RAL-395 2927 chr3R 28527644 28527680 chr3R 28527747 28527783 23 102 65.5 70.5 68.0 0.3 139 chr3R 28527644 exon Ppn - chr3R 28527714 exon Ppn - chr3R 28527783 exon Ppn - chr3R_23_28525001 chr3R_28525001 RAL-395 2928 chr3R 28554673 28554722 chr3R 28554790 28554839 27 117 10.5 8.5 9.5 2.6 166 chr3R 28554673 intergenic not near genes chr3R 28554756 intergenic not near genes chr3R 28554839 intergenic not near genes chr3R_27_28550001 chr3R_28550001 RAL-395 2929 chr3R 28616452 28616501 chr3R 28616572 28616621 20 120 0.5 3.5 2.0 6.7 169 chr3R 28616452 intron CG10011 - chr3R 28616536 intron CG10011 - chr3R 28616621 intron CG10011 - chr3R_20_28615001 chr3R_28615001 RAL-395 2930 chr3R 28716986 28716991 chr3R 28717093 28717094 4 106 21.0 8.5 14.8 0.3 108 chr3R 28716986 intron htt + chr3R 28717040 intron htt + chr3R 28717094 intron htt + chr3R_4_28715001 chr3R_28715001 RAL-395 2931 chr3R 28716992 28717044 chr3R 28717092 28717151 24 105 7.5 8.5 8.0 2.7 159 chr3R 28716992 intron htt + chr3R 28717072 intron htt + chr3R 28717151 intron htt + chr3R_24_28715001 chr3R_28715001 RAL-395 2932 chr3R 28742467 28742512 chr3R 28742569 28742614 25 101 7.0 11.0 9.0 2.5 147 chr3R 28742467 intron AstA-R2 - chr3R 28742540 intron AstA-R2 - chr3R 28742614 intron AstA-R2 - chr3R_25_28740001 chr3R_28740001 RAL-395 2933 chr3R 28758260 28758277 chr3R 28763903 28763920 roo 9 5643 13.0 0.0 6.5 1.2 5660 chr3R 28758260 intergenic aqrs - chr3R 28761090 intergenic not near genes chr3R 28763920 intergenic not near genes chr3R_9_28760001 chr3R_28760001 RAL-395 2934 chr3R 28758297 28758319 chr3R 28771330 28771352 Stalker4 11 13033 7.0 2.5 4.8 1.9 13055 chr3R 28758297 intergenic aqrs - chr3R 28764824 intergenic not near genes chr3R 28771352 intergenic not near genes chr3R_11_28760001 chr3R_28760001 RAL-395 2935 chr3R 28763902 28763918 chr3R 28771371 28771387 Stalker4 4 7469 0.0 5.5 2.8 1.1 7485 chr3R 28763902 intergenic not near genes chr3R 28767644 intergenic not near genes chr3R 28771387 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-395 2936 chr3R 28774994 28775018 chr3R 28775159 28775183 12 164 14.5 10.0 12.2 0.9 189 chr3R 28774994 intergenic not near genes chr3R 28775088 intergenic not near genes chr3R 28775183 intergenic not near genes chr3R_12_28775001 chr3R_28775001 RAL-395 2937 chr3R 28775021 28775052 chr3R 28775158 28775217 17 163 5.0 9.5 7.2 2.1 196 chr3R 28775021 intergenic not near genes chr3R 28775119 intergenic not near genes chr3R 28775217 intergenic not near genes chr3R_17_28775001 chr3R_28775001 RAL-395 2938 chr3R 28792857 28792903 chr3R 28797971 28798024 jockey 29 5120 8.5 10.0 9.2 2.8 5167 chr3R 28792857 intergenic not near genes chr3R 28795440 intergenic not near genes chr3R 28798024 intergenic not near genes chr3R_29_28795001 chr3R_28795001 RAL-395 2939 chr3R 28830864 28830917 chr3R 28830968 28831021 18 103 10.0 10.0 10.0 1.6 157 chr3R 28830864 intron WASp - chr3R 28830942 intron WASp - chr3R 28831021 intron WASp - chr3R_18_28830001 chr3R_28830001 RAL-395 2940 chr3R 21907534 21907536 chr3R 28831801 28831801 31 6924266 36.0 44.5 40.2 0.8 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_31_25365001 chr3R_25365001 RAL-395 2941 chr3R 21907534 21907536 chr3R 28831802 28831802 34 6924267 36.0 43.5 39.8 0.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_34_25365001 chr3R_25365001 RAL-395 2942 chr3R 28856023 28856037 chr3R 28856245 28856260 11 223 8.5 19.5 14.0 0.7 237 chr3R 28856023 intron,intron spg +,Inx3 - chr3R 28856142 intron,intron spg +,Inx3 - chr3R 28856260 intron,intron spg +,Inx3 - chr3R_11_28855001 chr3R_28855001 RAL-395 2943 chr3R 28922738 28922764 chr3R 28922839 28922866 13 102 7.0 0.0 3.5 2.9 128 chr3R 28922738 3` UTR Doa + chr3R 28922802 intergenic Doa +,CG11828 + chr3R 28922866 intergenic Doa +,CG11828 + chr3R_13_28920001 chr3R_28920001 RAL-395 2944 chr3R 28940125 28940185 chr3R 28940255 28940290 16 126 0.0 4.0 2.0 5.3 165 chr3R 28940125 intron CG14521 - chr3R 28940208 intron CG14521 - chr3R 28940290 intron CG14521 - chr3R_16_28940001 chr3R_28940001 RAL-395 2945 chr3R 28960484 28960541 chr3R 28960594 28960652 26 111 9.0 10.0 9.5 2.5 168 chr3R 28960484 intron CG14521 - chr3R 28960568 intron CG14521 - chr3R 28960652 intron CG14521 - chr3R_26_28960001 chr3R_28960001 RAL-395 2946 chr3R 29032718 29032760 chr3R 29032821 29032863 31 102 12.5 4.5 8.5 3.3 145 chr3R 29032718 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032790 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032863 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_31_29030001 chr3R_29030001 RAL-395 2947 chr3R 29053711 29053765 chr3R 29054247 29054300 9 535 7.5 0.5 4.0 1.8 589 chr3R 29053711 exon CG11842 + chr3R 29054006 intergenic CG11842 +,CG11843 + chr3R 29054300 intergenic CG11843 +,CG11842 + chr3R_9_29050001 chr3R_29050001 RAL-395 2948 chr3R 29059349 29059401 chr3R 29059466 29059521 43 120 9.0 7.0 8.0 4.8 172 chr3R 29059349 3` UTR Cul5 - chr3R 29059435 3` UTR Cul5 - chr3R 29059521 3` UTR Cul5 - chr3R_43_29055001 chr3R_29055001 RAL-395 2949 chr3R 29070029 29070080 chr3R 29070136 29070187 15 107 4.0 10.0 7.0 1.9 158 chr3R 29070029 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070187 intron CG11873 + chr3R_15_29070001 chr3R_29070001 RAL-395 2950 chr3R 29079374 29079387 chr3R 29080772 29080785 NOF 7 1398 11.5 0.0 5.8 1.0 1411 chr3R 29079374 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080785 intron CG11873 + chr3R_7_29080001 chr3R_29080001 RAL-395 2951 chr3R 29141526 29141552 chr3R 29141631 29141651 11 104 0.0 9.5 4.8 1.9 125 chr3R 29141526 intron CG14516 + chr3R 29141588 intron CG14516 + chr3R 29141651 intron CG14516 + chr3R_11_29140001 chr3R_29140001 RAL-395 2952 chr3R 29183091 29183136 chr3R 29183196 29183241 23 103 7.5 9.0 8.2 2.5 150 chr3R 29183091 intron CG14509 - chr3R 29183166 intron CG14509 - chr3R 29183241 intron CG14509 - chr3R_23_29180001 chr3R_29180001 RAL-395 2953 chr3R 29237230 29237250 chr3R 29239277 29239297 9 2044 67.0 9.0 38.0 0.2 2067 chr3R 29237230 exon CG11951 - chr3R 29238264 intron CG11951 - chr3R 29239297 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-395 2954 chr3R 29237256 29237540 chr3R 29239270 29239459 18 2002 39.0 8.5 23.8 0.7 2203 chr3R 29237256 exon CG11951 - chr3R 29238358 intron CG11951 - chr3R 29239459 exon CG31427 - chr3R_18_29235001 chr3R_29235001 RAL-395 2955 chr3R 29239200 29239248 chr3R 29245517 29245565 22 6317 8.5 50.0 29.2 0.7 6365 chr3R 29239200 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245565 exon SP1029 - chr3R_22_29240001 chr3R_29240001 RAL-395 2956 chr3R 29237523 29237536 chr3R 29239405 29239418 12 1882 38.5 18.5 28.5 0.4 1895 chr3R 29237523 exon CG11951 - chr3R 29238470 intron CG11951 - chr3R 29239418 exon CG31427 - chr3R_12_29235001 chr3R_29235001 RAL-395 2957 chr3R 29249619 29249651 chr3R 29249732 29249764 19 111 6.0 19.5 12.8 1.4 145 chr3R 29249619 intron SP1029 - chr3R 29249692 intron SP1029 - chr3R 29249764 intron SP1029 - chr3R_19_29245001 chr3R_29245001 RAL-395 2958 chr3R 29250956 29251014 chr3R 29251060 29251117 22 103 5.5 5.0 5.2 3.5 161 chr3R 29250956 intergenic not near genes chr3R 29251036 intergenic not near genes chr3R 29251117 intergenic not near genes chr3R_22_29250001 chr3R_29250001 RAL-395 2959 chr3R 29256241 29256244 chr3R 29256347 29256350 4 106 36.5 6.5 21.5 0.2 109 chr3R 29256241 intergenic CG45544 +,stg - chr3R 29256296 intergenic CG45544 +,stg - chr3R 29256350 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-395 2960 chr3R 29256245 29256299 chr3R 29256346 29256403 31 103 9.5 6.0 7.8 3.5 158 chr3R 29256245 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256403 intergenic CG45544 + chr3R_31_29255001 chr3R_29255001 RAL-395 2961 chr3R 29319804 29319853 chr3R 29320149 29320198 jockey 14 345 5.5 9.0 7.2 1.7 394 chr3R 29319804 intergenic Cnx99A - chr3R 29320001 intergenic Cnx99A - chr3R 29320198 intergenic not near genes chr3R_14_29320001 chr3R_29320001 RAL-395 2962 chr3R 29375958 29376215 chr3R 29376070 29376317 40 109 5.0 8.0 6.5 5.3 359 chr3R 29375958 intergenic not near genes chr3R 29376138 intergenic not near genes chr3R 29376317 intergenic not near genes chr3R_40_29375001 chr3R_29375001 RAL-395 2963 chr3R 29402956 29403006 chr3R 29403077 29403127 26 121 8.0 10.5 9.2 2.5 171 chr3R 29402956 intron Ptp99A + chr3R 29403042 intron Ptp99A + chr3R 29403127 intron Ptp99A + chr3R_26_29400001 chr3R_29400001 RAL-395 2964 chr3R 29406610 29406644 chr3R 29407922 29407956 jockey 20 1312 9.5 12.5 11.0 1.7 1346 chr3R 29406610 intron Ptp99A + chr3R 29407283 intron Ptp99A + chr3R 29407956 intron Ptp99A + chr3R_20_29405001 chr3R_29405001 RAL-395 2965 chr3R 29411994 29412048 chr3R 29412095 29412151 28 103 1.5 7.5 4.5 5.1 157 chr3R 29411994 intron Ptp99A + chr3R 29412072 intron Ptp99A + chr3R 29412151 intron Ptp99A + chr3R_28_29410001 chr3R_29410001 RAL-395 2966 chr3R 29446968 29447022 chr3R 29447081 29447135 44 111 8.0 8.0 8.0 4.9 167 chr3R 29446968 intron Ptp99A + chr3R 29447052 intron Ptp99A + chr3R 29447135 intron Ptp99A + chr3R_44_29445001 chr3R_29445001 RAL-395 2967 chr3R 29449331 29449391 chr3R 29449435 29449495 27 104 7.5 8.0 7.8 3.1 164 chr3R 29449331 intron Ptp99A + chr3R 29449413 intron Ptp99A + chr3R 29449495 intron Ptp99A + chr3R_27_29445001 chr3R_29445001 RAL-395 2968 chr3R 29471985 29472030 chr3R 29472104 29472149 31 118 13.0 3.5 8.2 3.4 164 chr3R 29471985 intron Ptp99A + chr3R 29472067 intron Ptp99A + chr3R 29472149 intron Ptp99A + chr3R_31_29470001 chr3R_29470001 RAL-395 2969 chr3R 29505869 29505878 chr3R 29505972 29505981 8 102 8.0 6.5 7.2 1.0 112 chr3R 29505869 intergenic not near genes chr3R 29505925 intergenic not near genes chr3R 29505981 intergenic not near genes chr3R_8_29505001 chr3R_29505001 RAL-395 2970 chr3R 29505879 29505923 chr3R 29505969 29506026 17 101 2.5 5.0 3.8 3.5 147 chr3R 29505879 intergenic not near genes chr3R 29505952 intergenic not near genes chr3R 29506026 intergenic not near genes chr3R_17_29505001 chr3R_29505001 RAL-395 2971 chr3R 29599581 29599637 chr3R 29602944 29603000 24 3365 73.0 64.0 68.5 0.3 3419 chr3R 29599581 intron,exon alph +,CG7568 - chr3R 29601290 intron alph + chr3R 29603000 intron alph + chr3R_24_29600001 chr3R_29600001 RAL-395 2972 chr3R 29624934 29624938 chr3R 29625034 29625040 4 102 20.5 7.5 14.0 0.3 106 chr3R 29624934 intergenic not near genes chr3R 29624987 intergenic not near genes chr3R 29625040 intergenic not near genes chr3R_4_29620001 chr3R_29620001 RAL-395 2973 chr3R 29624939 29624990 chr3R 29625033 29625092 22 100 6.0 7.0 6.5 2.9 153 chr3R 29624939 intergenic not near genes chr3R 29625016 intergenic not near genes chr3R 29625092 intergenic not near genes chr3R_22_29625001 chr3R_29625001 RAL-395 2974 chr3R 29642488 29642535 chr3R 29642591 29642638 26 103 5.5 5.0 5.2 4.2 150 chr3R 29642488 intron Dop1R2 - chr3R 29642563 intron Dop1R2 - chr3R 29642638 intron Dop1R2 - chr3R_26_29640001 chr3R_29640001 RAL-395 2975 chr3R 29645800 29645857 chr3R 29645907 29645964 41 106 8.0 6.5 7.2 5.0 164 chr3R 29645800 intron Dop1R2 - chr3R 29645882 intron Dop1R2 - chr3R 29645964 intron Dop1R2 - chr3R_41_29645001 chr3R_29645001 RAL-395 2976 chr3R 29648984 29649010 chr3R 29649100 29649126 5 115 11.0 6.0 8.5 0.5 142 chr3R 29648984 intron Dop1R2 - chr3R 29649055 intron Dop1R2 - chr3R 29649126 intron Dop1R2 - chr3R_5_29645001 chr3R_29645001 RAL-395 2977 chr3R 29655629 29655684 chr3R 29655734 29655789 6 105 8.0 0.0 4.0 1.2 160 chr3R 29655629 intron Dop1R2 - chr3R 29655709 intron Dop1R2 - chr3R 29655789 intron Dop1R2 - chr3R_6_29655001 chr3R_29655001 RAL-395 2978 chr3R 29738239 29738293 chr3R 29739732 29739786 hobo 34 1492 15.5 11.5 13.5 2.3 1547 chr3R 29738239 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739786 5` UTR CG1969 + chr3R_34_29735001 chr3R_29735001 RAL-395 2979 chr3R 29760334 29760383 chr3R 29761561 29761610 pogo 22 1226 11.0 7.5 9.2 2.2 1276 chr3R 29760334 intergenic not near genes chr3R 29760972 intergenic not near genes chr3R 29761610 intergenic not near genes chr3R_22_29760001 chr3R_29760001 RAL-395 2980 chr3R 29773877 29773893 chr3R 29773994 29774009 12 117 9.0 0.0 4.5 2.2 132 chr3R 29773877 intron kay + chr3R 29773943 intron kay + chr3R 29774009 intron kay + chr3R_12_29770001 chr3R_29770001 RAL-395 2981 chr3R 29831783 29831842 chr3R 29831894 29831953 40 109 11.0 10.0 10.5 3.5 170 chr3R 29831783 exon Atg16 - chr3R 29831868 intron Atg16 - chr3R 29831953 exon Atg16 - chr3R_40_29830001 chr3R_29830001 RAL-395 2982 chr3R 29881994 29882052 chr3R 29891177 29891235 roo 25 9183 8.5 8.0 8.2 2.7 9241 chr3R 29881994 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891235 intron CG31038 + chr3R_25_29885001 chr3R_29885001 RAL-395 2983 chr3R 29963473 29963512 chr3R 29963601 29963639 22 127 7.0 6.0 6.5 2.9 166 chr3R 29963473 intron TkR99D - chr3R 29963556 intron TkR99D - chr3R 29963639 intron TkR99D - chr3R_22_29960001 chr3R_29960001 RAL-395 2984 chr3R 29966036 29966069 chr3R 29966142 29966172 11 102 4.5 12.5 8.5 1.2 136 chr3R 29966036 intron TkR99D - chr3R 29966104 intron TkR99D - chr3R 29966172 intron TkR99D - chr3R_11_29965001 chr3R_29965001 RAL-395 2985 chr3R 30032137 30032153 chr3R 30032241 30032258 9 105 19.5 9.0 14.2 0.6 121 chr3R 30032137 intron Axn + chr3R 30032198 intron Axn + chr3R 30032258 intron Axn + chr3R_9_30030001 chr3R_30030001 RAL-395 2986 chr3R 30084865 30084878 chr3R 30086327 30086371 hobo 11 1490 0.0 10.5 5.2 1.8 1506 chr3R 30084865 intron sima + chr3R 30085618 intron sima + chr3R 30086371 intron sima + chr3R_11_30085001 chr3R_30085001 RAL-395 2987 chr3R 30112928 30112985 chr3R 30113030 30113087 36 101 6.5 10.5 8.5 3.8 159 chr3R 30112928 intron sima + chr3R 30113008 intron sima + chr3R 30113087 intron sima + chr3R_36_30110001 chr3R_30110001 RAL-395 2988 chr3R 30124936 30124973 chr3R 30125036 30125075 22 102 8.0 11.5 9.8 2.0 139 chr3R 30124936 intergenic CG45073 - chr3R 30125006 intergenic CG45073 - chr3R 30125075 intergenic CG45073 - chr3R_22_30125001 chr3R_30125001 RAL-395 2989 chr3R 30182731 30182781 chr3R 30182896 30182945 26 165 5.5 9.0 7.2 3.2 214 chr3R 30182731 intergenic not near genes chr3R 30182838 intergenic not near genes chr3R 30182945 intergenic not near genes chr3R_26_30180001 chr3R_30180001 RAL-395 2990 chr3R 30210597 30210674 chr3R 30210733 30210780 10 112 0.0 8.0 4.0 2.0 183 chr3R 30210597 intergenic Anp +,CecA1 + chr3R 30210688 intergenic CecA1 +,Anp + chr3R 30210780 intergenic CecA1 +,Anp + chr3R_10_30210001 chr3R_30210001 RAL-395 2991 chr3R 30238738 30238793 chr3R 30239927 30239967 1360 21 1188 9.5 7.0 8.2 2.3 1229 chr3R 30238738 intergenic not near genes chr3R 30239352 intergenic not near genes chr3R 30239967 intergenic not near genes chr3R_21_30235001 chr3R_30235001 RAL-395 2992 chr3R 30252332 30252337 chr3R 30252705 30252710 4 373 21.0 16.5 18.8 0.2 378 chr3R 30252332 exon CG9682 + chr3R 30252521 exon CG9682 + chr3R 30252710 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-395 2993 chr3R 30287747 30287760 chr3R 30287856 30287869 6 109 17.5 6.0 11.8 0.5 122 chr3R 30287747 intron hdc + chr3R 30287808 intron hdc + chr3R 30287869 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-395 2994 chr3R 30292750 30292800 chr3R 30292864 30292914 24 114 9.0 11.5 10.2 2.1 164 chr3R 30292750 intron hdc + chr3R 30292832 intron hdc + chr3R 30292914 intron hdc + chr3R_24_30290001 chr3R_30290001 RAL-395 2995 chr3R 30315607 30315623 chr3R 30315714 30315732 12 108 20.5 17.0 18.8 0.6 125 chr3R 30315607 intron hdc + chr3R 30315670 intron hdc + chr3R 30315732 intron hdc + chr3R_12_30315001 chr3R_30315001 RAL-395 2996 chr3R 30317303 30317358 chr3R 30324920 30324976 roo 23 7617 3.0 5.5 4.2 4.4 7673 chr3R 30317303 intron hdc + chr3R 30321140 intron hdc + chr3R 30324976 intron hdc + chr3R_23_30320001 chr3R_30320001 RAL-395 2997 chr3R 30396194 30396240 chr3R 30404486 30404532 roo 16 8292 10.5 10.0 10.2 1.4 8338 chr3R 30396194 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404532 5` UTR CR45570 + chr3R_16_30400001 chr3R_30400001 RAL-395 2998 chr3R 30456377 30456425 chr3R 30456484 30456532 17 107 1.0 8.5 4.8 2.9 155 chr3R 30456377 intergenic CG2224 - chr3R 30456454 3` UTR CG2224 - chr3R 30456532 3` UTR CG2224 - chr3R_17_30455001 chr3R_30455001 RAL-395 2999 chr3R 30461466 30461521 chr3R 30461609 30461664 24 142 6.0 9.5 7.8 2.7 198 chr3R 30461466 intron CDase + chr3R 30461565 intron CDase + chr3R 30461664 intron CDase + chr3R_24_30460001 chr3R_30460001 RAL-395 3000 chr3R 30480455 30480506 chr3R 30482949 30483000 jockey 24 2494 9.5 11.5 10.5 2.1 2545 chr3R 30480455 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30483000 intron PH4alphaEFB + chr3R_24_30480001 chr3R_30480001 RAL-395 3001 chr3R 30485029 30485071 chr3R 30485131 30485173 20 102 3.5 8.5 6.0 2.9 144 chr3R 30485029 intron PH4alphaEFB + chr3R 30485101 intron PH4alphaEFB + chr3R 30485173 intron PH4alphaEFB + chr3R_20_30485001 chr3R_30485001 RAL-395 3002 chr3R 30488099 30488112 chr3R 30488204 30488217 9 105 8.5 0.0 4.2 1.7 118 chr3R 30488099 intergenic Jon99Fii - chr3R 30488158 intergenic Jon99Fii - chr3R 30488217 intergenic Jon99Fii - chr3R_9_30485001 chr3R_30485001 RAL-395 3003 chr3R 30544714 30544756 chr3R 30544826 30544874 24 117 11.5 10.5 11.0 2.0 160 chr3R 30544714 intron tmod + chr3R 30544794 intron tmod + chr3R 30544874 intron tmod + chr3R_24_30540001 chr3R_30540001 RAL-395 3004 chr3R 30627585 30627628 chr3R 30627690 30627734 30 106 15.5 10.0 12.8 2.2 149 chr3R 30627585 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627734 exon CG2267 - chr3R_30_30625001 chr3R_30625001 RAL-395 3005 chr3R 30679507 30679552 chr3R 30687002 30687047 blood 26 7495 8.0 12.5 10.2 2.3 7540 chr3R 30679507 intergenic not near genes chr3R 30683277 intergenic not near genes chr3R 30687047 intergenic not near genes chr3R_26_30680001 chr3R_30680001 RAL-395 3006 chr3R 30690134 30690191 chr3R 30690244 30690299 29 109 6.5 9.5 8.0 3.2 165 chr3R 30690134 intergenic not near genes chr3R 30690216 intergenic Spn100A + chr3R 30690299 intergenic Spn100A + chr3R_29_30690001 chr3R_30690001 RAL-395 3007 chr3R 30700295 30700306 chr3R 30700707 30700718 9 412 19.0 0.0 9.5 0.9 423 chr3R 30700295 intergenic not near genes chr3R 30700506 intergenic not near genes chr3R 30700718 intergenic not near genes chr3R_9_30700001 chr3R_30700001 RAL-395 3008 chr3R 30700842 30700872 chr3R 30700991 30701021 14 148 5.5 0.0 2.8 3.7 179 chr3R 30700842 intergenic not near genes chr3R 30700932 intergenic not near genes chr3R 30701021 intergenic not near genes chr3R_14_30700001 chr3R_30700001 RAL-395 3009 chr3R 30756995 30757017 chr3R 30757175 30757197 10 180 6.0 9.0 7.5 1.2 202 chr3R 30756995 intergenic not near genes chr3R 30757096 intergenic not near genes chr3R 30757197 intergenic not near genes chr3R_10_30755001 chr3R_30755001 RAL-395 3010 chr3R 30818790 30818827 chr3R 30820380 30820414 1360 16 1590 7.5 4.0 5.8 2.4 1624 chr3R 30818790 intron cindr + chr3R 30819602 intron cindr + chr3R 30820414 intron cindr + chr3R_16_30815001 chr3R_30815001 RAL-395 3011 chr3R 30845058 30845070 chr3R 30845162 30845174 6 103 9.0 0.0 4.5 1.1 116 chr3R 30845058 intergenic not near genes chr3R 30845116 intergenic not near genes chr3R 30845174 intergenic not near genes chr3R_6_30845001 chr3R_30845001 RAL-395 3012 chr3R 30859379 30859422 chr3R 30859483 30859526 20 104 8.5 6.0 7.2 2.4 147 chr3R 30859379 intergenic not near genes chr3R 30859452 intergenic not near genes chr3R 30859526 intergenic not near genes chr3R_20_30855001 chr3R_30855001 RAL-395 3013 chr3R 30901407 30901460 chr3R 30901940 30901993 21 533 6.5 6.5 6.5 2.8 586 chr3R 30901407 intron CG33483 - chr3R 30901700 intron CG33483 - chr3R 30901993 exon CG33483 - chr3R_21_30900001 chr3R_30900001 RAL-395 3014 chr3R 30973109 30973167 chr3R 30973295 30973354 28 187 3.0 4.5 3.8 5.8 245 chr3R 30973109 intron 5-HT7 - chr3R 30973232 intron 5-HT7 - chr3R 30973354 intron 5-HT7 - chr3R_28_30970001 chr3R_30970001 RAL-395 3015 chr3R 30982571 30982621 chr3R 30982689 30982738 31 118 4.0 9.0 6.5 4.1 167 chr3R 30982571 intron 5-HT7 - chr3R 30982654 intron 5-HT7 - chr3R 30982738 intron 5-HT7 - chr3R_31_30980001 chr3R_30980001 RAL-395 3016 chr3R 30985662 30985713 chr3R 30985773 30985824 27 111 6.0 8.0 7.0 3.4 162 chr3R 30985662 intron 5-HT7 - chr3R 30985743 intron 5-HT7 - chr3R 30985824 intron 5-HT7 - chr3R_27_30985001 chr3R_30985001 RAL-395 3017 chr3R 30993638 30993663 chr3R 30993745 30993770 18 107 6.5 8.5 7.5 2.1 132 chr3R 30993638 intron 5-HT7 - chr3R 30993704 intron 5-HT7 - chr3R 30993770 intron 5-HT7 - chr3R_18_30990001 chr3R_30990001 RAL-395 3018 chr3R 31047186 31047247 chr3R 31047506 31047567 31 319 8.5 6.0 7.2 3.8 381 chr3R 31047186 intergenic CanA1 + chr3R 31047376 intergenic not near genes chr3R 31047567 intergenic not near genes chr3R_31_31045001 chr3R_31045001 RAL-395 3019 chr3R 31047814 31047830 chr3R 31047936 31047952 8 122 12.5 4.0 8.2 0.9 138 chr3R 31047814 intergenic not near genes chr3R 31047883 intergenic not near genes chr3R 31047952 intergenic not near genes chr3R_8_31045001 chr3R_31045001 RAL-395 3020 chr3R 31073316 31073346 chr3R 31073423 31073453 13 106 9.5 18.0 13.8 0.9 137 chr3R 31073316 exon Sox100B + chr3R 31073384 intron Sox100B + chr3R 31073453 intron Sox100B + chr3R_13_31070001 chr3R_31070001 RAL-395 3021 chr3R 31074232 31074251 chr3R 31081856 31081875 springer 10 7623 11.5 14.0 12.8 0.7 7643 chr3R 31074232 intron Sox100B + chr3R 31078054 intron Sox100B + chr3R 31081875 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-395 3022 chr3R 31084896 31084935 chr3R 31084998 31085037 16 102 4.0 9.5 6.8 2.1 141 chr3R 31084896 intergenic not near genes chr3R 31084966 intergenic not near genes chr3R 31085037 intergenic not near genes chr3R_16_31080001 chr3R_31080001 RAL-395 3023 chr3R 31137128 31137181 chr3R 31137234 31137279 27 105 5.0 8.5 6.8 3.5 151 chr3R 31137128 intron Gycbeta100B + chr3R 31137204 intron Gycbeta100B + chr3R 31137279 intron Gycbeta100B + chr3R_27_31135001 chr3R_31135001 RAL-395 3024 chr3R 31186517 31186575 chr3R 31186619 31186674 31 102 9.0 10.0 9.5 3.0 157 chr3R 31186517 intron mesh - chr3R 31186596 intron mesh - chr3R 31186674 intron mesh - chr3R_31_31185001 chr3R_31185001 RAL-395 3025 chr3R 31279356 31279408 chr3R 31285564 31285625 diver 33 6216 6.0 9.5 7.8 3.7 6269 chr3R 31279356 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285625 intergenic not near genes chr3R_33_31280001 chr3R_31280001 RAL-395 3026 chr3R 31320134 31320193 chr3R 31320255 31320314 24 121 3.0 8.5 5.8 3.5 180 chr3R 31320134 intron CG34347 + chr3R 31320224 intron CG34347 + chr3R 31320314 intron CG34347 + chr3R_24_31320001 chr3R_31320001 RAL-395 3027 chr3R 31413067 31413105 chr3R 31418293 31418304 copia 13 5222 13.5 0.0 6.8 1.7 5237 chr3R 31413067 intron Gprk2 + chr3R 31415686 intron Gprk2 + chr3R 31418304 intron Gprk2 + chr3R_13_31415001 chr3R_31415001 RAL-395 3028 chr3R 31435335 31435387 chr3R 31435513 31435565 24 177 8.5 6.5 7.5 2.8 230 chr3R 31435335 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435565 intron Gprk2 + chr3R_24_31435001 chr3R_31435001 RAL-395 3029 chr3R 31477342 31477388 chr3R 31477536 31477582 25 194 6.5 5.5 6.0 3.6 240 chr3R 31477342 intergenic not near genes chr3R 31477462 intergenic not near genes chr3R 31477582 intergenic not near genes chr3R_25_31475001 chr3R_31475001 RAL-395 3030 chr3R 31498411 31498425 chr3R 31498527 31498534 9 117 12.5 14.0 13.2 0.6 123 chr3R 31498411 intergenic not near genes chr3R 31498472 intergenic not near genes chr3R 31498534 intergenic not near genes chr3R_9_31495001 chr3R_31495001 RAL-395 3031 chr3R 31630034 31630085 chr3R 31630165 31630216 26 129 4.5 6.0 5.2 4.2 182 chr3R 31630034 intron kek6 + chr3R 31630125 intron kek6 + chr3R 31630216 intron kek6 + chr3R_26_31630001 chr3R_31630001 RAL-395 3032 chr3R 31643192 31643243 chr3R 31643297 31643348 32 104 11.0 7.5 9.2 3.1 156 chr3R 31643192 intron kek6 + chr3R 31643270 intron kek6 + chr3R 31643348 intron kek6 + chr3R_32_31640001 chr3R_31640001 RAL-395 3033 chr3R 31691508 31691560 chr3R 31696299 31696352 Doc 25 4792 16.0 13.5 14.8 1.6 4844 chr3R 31691508 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696352 intergenic not near genes chr3R_25_31690001 chr3R_31690001 RAL-395 3034 chr3R 31829354 31829404 chr3R 31829456 31829506 36 101 14.0 8.0 11.0 3.0 152 chr3R 31829354 intron RhoGAP100F + chr3R 31829430 intron RhoGAP100F + chr3R 31829506 intron RhoGAP100F + chr3R_36_31825001 chr3R_31825001 RAL-395 3035 chr3R 31858123 31858136 chr3R 31858227 31858240 4 104 10.0 5.0 7.5 0.5 117 chr3R 31858123 intron heph - chr3R 31858182 intron heph - chr3R 31858240 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-395 3036 chr3R 31858142 31858173 chr3R 31858226 31858277 17 101 4.5 5.0 4.8 2.9 135 chr3R 31858142 intron heph - chr3R 31858210 intron heph - chr3R 31858277 intron heph - chr3R_17_31855001 chr3R_31855001 RAL-395 3037 chr3R 31858734 31858783 chr3R 31858833 31858895 24 111 9.0 6.0 7.5 2.8 161 chr3R 31858734 intron heph - chr3R 31858814 intron heph - chr3R 31858895 intron heph - chr3R_24_31855001 chr3R_31855001 RAL-395 3038 chr3R 31864252 31864280 chr3R 31864360 31864388 16 107 7.5 4.0 5.8 2.4 136 chr3R 31864252 intron heph - chr3R 31864320 intron heph - chr3R 31864388 intron heph - chr3R_16_31860001 chr3R_31860001 RAL-395 3039 chr3R 31961311 31961368 chr3R 31961420 31961477 31 107 8.5 6.0 7.2 3.8 166 chr3R 31961311 intron heph - chr3R 31961394 intron heph - chr3R 31961477 intron heph - chr3R_31_31960001 chr3R_31960001 RAL-395 3040 chr3R 31962055 31962059 chr3R 31962387 31962391 5 331 25.5 0.0 12.8 0.4 336 chr3R 31962055 intron heph - chr3R 31962223 intron heph - chr3R 31962391 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-395 3041 chr3R 31962060 31962095 chr3R 31962384 31962427 22 331 11.5 0.0 5.8 3.2 367 chr3R 31962060 intron heph - chr3R 31962244 intron heph - chr3R 31962427 intron heph - chr3R_22_31960001 chr3R_31960001 RAL-395 3042 chr3R 31964157 31964209 chr3R 31964269 31964321 26 111 6.5 7.0 6.8 3.3 164 chr3R 31964157 intron heph - chr3R 31964239 intron heph - chr3R 31964321 intron heph - chr3R_26_31960001 chr3R_31960001 RAL-395 3043 chr3R 31976537 31976574 chr3R 31976844 31976881 19 307 0.0 11.5 5.8 2.8 344 chr3R 31976537 intron heph - chr3R 31976709 intron heph - chr3R 31976881 intron heph - chr3R_19_31975001 chr3R_31975001 RAL-395 3044 chr3R 31997967 31998021 chr3R 32005463 32005517 blood 24 7495 6.0 6.5 6.2 3.3 7550 chr3R 31997967 intron heph - chr3R 32001742 intron heph - chr3R 32005517 intron heph - chr3R_24_32000001 chr3R_32000001 RAL-395 3045 chr4 76473 76509 chr4 81942 81978 I-element 11 5469 6.0 8.0 7.0 1.4 5505 chr4 76473 intron pan + chr4 79226 intron pan + chr4 81978 intron pan + chr4_11_75001 chr4_75001 RAL-395 3046 chr4 149980 150020 chr4 150384 150424 7 404 28.5 42.0 35.2 0.2 444 chr4 149980 intergenic not near genes chr4 150202 intergenic not near genes chr4 150424 intergenic CG32006 + chr4_7_150001 chr4_150001 RAL-395 3047 chr4 319966 320016 chr4 328168 328218 Stalker2 6 8197 6.5 3.0 4.8 1.0 8252 chr4 319966 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328218 3` UTR,3` UTR CG32850 +,PMCA - chr4_6_320001 chr4_320001 RAL-395 3048 chr4 355660 355720 chr4 355769 355829 33 108 4.5 6.0 5.2 5.3 169 chr4 355660 intron PMCA - chr4 355744 intron PMCA - chr4 355829 intron PMCA - chr4_33_355001 chr4_355001 RAL-395 3049 chr4 419463 419519 chr4 419668 419724 10 205 52.0 60.0 56.0 0.2 261 chr4 419463 intergenic not near genes chr4 419594 intergenic not near genes chr4 419724 intergenic not near genes chr4_10_415001 chr4_415001 RAL-395 3050 chr4 521309 521350 chr4 521413 521454 14 104 8.5 8.0 8.2 1.5 145 chr4 521309 intron zfh2 + chr4 521382 intron zfh2 + chr4 521454 intron zfh2 + chr4_14_520001 chr4_520001 RAL-395 3051 chr4 637854 637872 chr4 637992 638009 4 136 27.5 27.0 27.2 0.1 155 chr4 637854 intron CG9935 - chr4 637932 intron CG9935 - chr4 638009 intron CG9935 - chr4_4_635001 chr4_635001 RAL-395 3052 chr4 662159 662206 chr4 662830 662876 INE-1 24 670 5.0 5.0 5.0 4.0 717 chr4 662159 intron gw - chr4 662518 intron gw - chr4 662876 5` UTR gw - chr4_24_660001 chr4_660001 RAL-395 3053 chr4 671582 671627 chr4 680191 680236 Tirant 23 8609 10.0 7.5 8.8 2.3 8654 chr4 671582 intron CG11360 + chr4 675909 intron CG11360 + chr4 680236 intron CG11360 + chr4_23_675001 chr4_675001 RAL-395 3054 chr4 706627 706632 chr4 706834 706840 4 207 32.5 37.0 34.8 0.1 213 chr4 706627 intron ey + chr4 706734 intron ey + chr4 706840 intron ey + chr4_4_705001 chr4_705001 RAL-395 3055 chr4 852875 852926 chr4 853265 853316 18 389 9.5 5.5 7.5 2.1 441 chr4 852875 intergenic not near genes chr4 853096 intergenic not near genes chr4 853316 intergenic CG11148 - chr4_18_850001 chr4_850001 RAL-395 3056 chrX 295835 295874 chrX 303481 303520 412 16 7644 15.0 8.0 11.5 1.3 7685 chrX 295835 intron CG3777 + chrX 299678 intron CG3777 + chrX 303520 intron CG3777 + chrX_16_295001 chrX_295001 RAL-395 3057 chrX 318453 318495 chrX 323565 323607 flea 16 5112 8.5 10.5 9.5 1.5 5154 chrX 318453 intron,intron CG3777 +,CG32816 - chrX 321030 intron,intron CG3777 +,CG32816 - chrX 323607 intron,intron CG3777 +,CG32816 - chrX_16_320001 chrX_320001 RAL-395 3058 chrX 428396 428447 chrX 434607 434658 3S18 25 6211 8.0 4.0 6.0 3.6 6262 chrX 428396 intron CG32816 - chrX 431527 intron CG32816 - chrX 434658 intron CG32816 - chrX_25_430001 chrX_430001 RAL-395 3059 chrX 444326 444378 chrX 444703 444754 23 376 9.5 5.0 7.2 2.8 428 chrX 444326 intron CG32816 - chrX 444540 intron CG32816 - chrX 444754 intron CG32816 - chrX_23_440001 chrX_440001 RAL-395 3060 chrX 551400 551455 chrX 558987 559043 412 28 7588 7.5 7.5 7.5 3.3 7643 chrX 551400 intron Appl + chrX 555222 intron Appl + chrX 559043 intron Appl + chrX_28_555001 chrX_555001 RAL-395 3061 chrX 667623 667684 chrX 667733 667794 14 108 3.5 3.5 3.5 3.1 171 chrX 667623 intergenic not near genes chrX 667708 intergenic not near genes chrX 667794 intergenic not near genes chrX_14_665001 chrX_665001 RAL-395 3062 chrX 670224 670295 chrX 670342 670401 19 107 0.5 4.5 2.5 5.4 177 chrX 670224 intergenic not near genes chrX 670312 intergenic not near genes chrX 670401 intergenic not near genes chrX_19_670001 chrX_670001 RAL-395 3063 chrX 680818 680871 chrX 680927 680980 28 108 5.0 5.5 5.2 4.5 162 chrX 680818 intergenic not near genes chrX 680899 intergenic not near genes chrX 680980 intergenic not near genes chrX_28_680001 chrX_680001 RAL-395 3064 chrX 757192 757241 chrX 757471 757520 26 278 5.5 9.5 7.5 3.1 328 chrX 757192 intron CG5254 + chrX 757356 intron CG5254 + chrX 757520 intron CG5254 + chrX_26_755001 chrX_755001 RAL-395 3065 chrX 778105 778158 chrX 778218 778271 24 115 10.0 0.0 5.0 4.0 166 chrX 778105 intron fz3 + chrX 778188 intron fz3 + chrX 778271 intron fz3 + chrX_24_775001 chrX_775001 RAL-395 3066 chrX 806765 806816 chrX 806887 806938 20 121 7.5 4.5 6.0 2.9 173 chrX 806765 intron Sec22 + chrX 806852 intron Sec22 + chrX 806938 intron Sec22 + chrX_20_805001 chrX_805001 RAL-395 3067 chrX 827581 827635 chrX 835399 835447 roo 22 7811 8.5 4.0 6.2 3.1 7866 chrX 827581 intron CG43867 - chrX 831514 intron CG43867 - chrX 835447 intron CG43867 - chrX_22_830001 chrX_830001 RAL-395 3068 chrX 906679 906730 chrX 908494 908545 S-element 21 1814 10.0 11.0 10.5 1.8 1866 chrX 906679 intron CG43867 - chrX 907612 intron CG43867 - chrX 908545 intron CG43867 - chrX_21_905001 chrX_905001 RAL-395 3069 chrX 1024427 1024464 chrX 1024535 1024572 21 108 5.0 8.5 6.8 2.7 145 chrX 1024427 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024500 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024572 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_21_1020001 chrX_1020001 RAL-395 3070 chrX 1253712 1253752 chrX 1253811 1253860 22 106 10.0 8.0 9.0 2.2 148 chrX 1253712 intron Atf3 - chrX 1253786 intron Atf3 - chrX 1253860 intron Atf3 - chrX_22_1250001 chrX_1250001 RAL-395 3071 chrX 1357756 1357797 chrX 1367952 1367992 Doc 14 10196 10.5 10.0 10.2 1.2 10236 chrX 1357756 intergenic png - chrX 1362874 intergenic not near genes chrX 1367992 intergenic not near genes chrX_14_1360001 chrX_1360001 RAL-395 3072 chrX 1428566 1428622 chrX 1428678 1428733 23 111 5.5 4.5 5.0 3.8 167 chrX 1428566 intron futsch + chrX 1428650 intron futsch + chrX 1428733 intron futsch + chrX_23_1425001 chrX_1425001 RAL-395 3073 chrX 1518014 1518068 chrX 1523442 1523496 jockey 16 5427 6.0 6.0 6.0 2.3 5482 chrX 1518014 intergenic inc + chrX 1520755 intergenic not near genes chrX 1523496 intergenic not near genes chrX_16_1520001 chrX_1520001 RAL-395 3074 chrX 1627291 1627307 chrX 1627392 1627410 9 102 14.5 13.5 14.0 0.6 119 chrX 1627291 intron,intron Mur2B -,br + chrX 1627350 intron,intron Mur2B -,br + chrX 1627410 intron,intron Mur2B -,br + chrX_9_1625001 chrX_1625001 RAL-395 3075 chrX 1627966 1627974 chrX 1635460 1635468 gtwin 5 7494 15.5 14.0 14.8 0.3 7502 chrX 1627966 intron,intron Mur2B -,br + chrX 1631717 intron,intron Mur2B -,br + chrX 1635468 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-395 3076 chrX 1651633 1651656 chrX 1651740 1651763 17 107 12.0 13.5 12.8 1.2 130 chrX 1651633 intron Mur2B - chrX 1651698 intron Mur2B - chrX 1651763 intron Mur2B - chrX_17_1650001 chrX_1650001 RAL-395 3077 chrX 1674836 1674849 chrX 1674938 1674951 4 102 8.0 7.0 7.5 0.5 115 chrX 1674836 3` UTR CG32809 - chrX 1674894 3` UTR CG32809 - chrX 1674951 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-395 3078 chrX 1930511 1930567 chrX 1938108 1938163 opus 17 7595 7.0 5.0 6.0 2.4 7652 chrX 1930511 3` UTR CG11596 + chrX 1934337 intergenic not near genes chrX 1938163 3` UTR CG3857 - chrX_17_1930001 chrX_1930001 RAL-395 3079 chrX 1954860 1954916 chrX 1962826 1962880 Stalker2 16 7965 4.0 8.0 6.0 2.3 8020 chrX 1954860 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962880 intron Hr4 + chrX_16_1955001 chrX_1955001 RAL-395 3080 chrX 2308818 2308823 chrX 2317427 2317432 Tirant 4 8609 4.5 16.5 10.5 0.3 8614 chrX 2308818 intron phl + chrX 2313125 intron phl + chrX 2317432 intron phl + chrX_4_2310001 chrX_2310001 RAL-395 3081 chrX 2399811 2399868 chrX 2408190 2408235 roo 19 8373 6.5 0.0 3.2 4.5 8424 chrX 2399811 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408235 intergenic not near genes chrX_19_2400001 chrX_2400001 RAL-395 3082 chrX 2429653 2429668 chrX 2429760 2429775 12 106 0.0 8.5 4.2 2.3 122 chrX 2429653 intergenic not near genes chrX 2429714 intergenic not near genes chrX 2429775 intergenic not near genes chrX_12_2425001 chrX_2425001 RAL-395 3083 chrX 2454446 2454492 chrX 2454552 2454598 24 106 6.5 7.5 7.0 3.0 152 chrX 2454446 intron boi - chrX 2454522 intron boi - chrX 2454598 intron boi - chrX_24_2450001 chrX_2450001 RAL-395 3084 chrX 2506954 2506965 chrX 2507068 2507085 5 118 4.0 11.5 7.8 0.6 131 chrX 2506954 intron trol - chrX 2507020 intron trol - chrX 2507085 intron trol - chrX_5_2505001 chrX_2505001 RAL-395 3085 chrX 2578790 2578845 chrX 2578920 2578975 25 129 7.5 7.5 7.5 2.9 185 chrX 2578790 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578975 intergenic Vha36-3 -,Pdfr + chrX_25_2575001 chrX_2575001 RAL-395 3086 chrX 2583824 2583884 chrX 2583951 2584011 20 126 8.0 6.0 7.0 2.5 187 chrX 2583824 3` UTR CG13760 - chrX 2583918 3` UTR CG13760 - chrX 2584011 3` UTR CG13760 - chrX_20_2580001 chrX_2580001 RAL-395 3087 chrX 2610364 2610413 chrX 2617507 2617556 HMS-Beagle 7 7142 6.5 5.0 5.8 1.0 7192 chrX 2610364 intergenic CG8636 - chrX 2613960 intergenic not near genes chrX 2617556 intergenic Tsp3A - chrX_7_2610001 chrX_2610001 RAL-395 3088 chrX 2635347 2635401 chrX 2635482 2635536 9 135 4.0 10.0 7.0 1.1 189 chrX 2635347 intron sgg + chrX 2635442 intron sgg + chrX 2635536 intron sgg + chrX_9_2635001 chrX_2635001 RAL-395 3089 chrX 2662137 2662189 chrX 2662262 2662313 19 124 7.0 3.5 5.2 3.1 176 chrX 2662137 intron sgg + chrX 2662225 intron sgg + chrX 2662313 intron sgg + chrX_19_2660001 chrX_2660001 RAL-395 3090 chrX 2814039 2814044 chrX 2814172 2814177 4 133 10.5 0.0 5.2 0.6 138 chrX 2814039 intron kirre + chrX 2814108 intron kirre + chrX 2814177 intron kirre + chrX_4_2810001 chrX_2810001 RAL-395 3091 chrX 2844878 2844925 chrX 2852314 2852361 mdg1 20 7436 4.5 6.0 5.2 3.2 7483 chrX 2844878 intron kirre + chrX 2848620 intron kirre + chrX 2852361 intron kirre + chrX_20_2845001 chrX_2845001 RAL-395 3092 chrX 2877019 2877073 chrX 2877147 2877201 21 127 6.0 4.0 5.0 3.5 182 chrX 2877019 intron kirre + chrX 2877110 intron kirre + chrX 2877201 intron kirre + chrX_21_2875001 chrX_2875001 RAL-395 3093 chrX 2917067 2917122 chrX 2917173 2917228 27 104 5.5 5.0 5.2 4.4 161 chrX 2917067 intron kirre + chrX 2917148 intron kirre + chrX 2917228 intron kirre + chrX_27_2915001 chrX_2915001 RAL-395 3094 chrX 2963804 2963815 chrX 2963906 2963917 9 102 14.0 9.0 11.5 0.7 113 chrX 2963804 intron,intron kirre +,rst - chrX 2963860 intron,intron kirre +,rst - chrX 2963917 intron,intron kirre +,rst - chrX_9_2960001 chrX_2960001 RAL-395 3095 chrX 3003843 3003900 chrX 3004476 3004533 17 633 2.5 6.0 4.2 3.3 690 chrX 3003843 intron kirre + chrX 3004188 intron kirre + chrX 3004533 intron kirre + chrX_17_3000001 chrX_3000001 RAL-395 3096 chrX 3031139 3031185 chrX 3031246 3031295 15 107 6.0 5.5 5.8 2.2 156 chrX 3031139 intron kirre + chrX 3031217 intron kirre + chrX 3031295 intron kirre + chrX_15_3030001 chrX_3030001 RAL-395 3097 chrX 3058004 3058040 chrX 3058264 3058307 pogo 9 265 2.0 5.0 3.5 2.0 303 chrX 3058004 intron kirre + chrX 3058156 intron kirre + chrX 3058307 intron kirre + chrX_9_3055001 chrX_3055001 RAL-395 3098 chrX 3074752 3074754 chrX 14317414 14317416 4 11242662 17.5 28.5 23.0 0.2 11242664 chrX 3074752 intron kirre + chrX 8696084 intergenic not near genes chrX 14317416 intergenic betaNACtes6 - chrX_4_8695001 chrX_8695001 RAL-395 3099 chrX 3075617 3075663 chrX 3080943 3080995 Transpac 24 5331 8.0 5.5 6.8 3.1 5378 chrX 3075617 intron kirre + chrX 3078306 intron kirre + chrX 3080995 intron kirre + chrX_24_3075001 chrX_3075001 RAL-395 3100 chrX 3155696 3155746 chrX 3155811 3155856 15 113 9.0 5.5 7.2 1.8 160 chrX 3155696 intron N + chrX 3155776 intron N + chrX 3155856 intron N + chrX_15_3155001 chrX_3155001 RAL-395 3101 chrX 3206489 3206503 chrX 3206593 3206608 6 105 0.0 14.0 7.0 0.8 119 chrX 3206489 intron dnc + chrX 3206548 intron dnc + chrX 3206608 intron dnc + chrX_6_3205001 chrX_3205001 RAL-395 3102 chrX 3218487 3218497 chrX 3227661 3227672 roo 4 9175 1.5 6.0 3.8 0.8 9185 chrX 3218487 intron dnc + chrX 3223080 intron dnc + chrX 3227672 intron dnc + chrX_4_3220001 chrX_3220001 RAL-395 3103 chrX 3243625 3243652 chrX 3243741 3243768 10 116 9.0 9.0 9.0 1.0 143 chrX 3243625 intron dnc + chrX 3243696 intron dnc + chrX 3243768 intron dnc + chrX_10_3240001 chrX_3240001 RAL-395 3104 chrX 3268318 3268362 chrX 3268848 3268892 15 530 4.5 6.0 5.2 2.4 574 chrX 3268318 intron dnc + chrX 3268605 intron dnc + chrX 3268892 intron dnc + chrX_15_3265001 chrX_3265001 RAL-395 3105 chrX 3306318 3306377 chrX 3306426 3306485 14 108 4.5 1.0 2.8 3.7 167 chrX 3306318 intron dnc + chrX 3306402 intron dnc + chrX 3306485 intron dnc + chrX_14_3305001 chrX_3305001 RAL-395 3106 chrX 3357574 3357585 chrX 3357684 3357695 4 110 16.5 0.0 8.2 0.4 121 chrX 3357574 intergenic not near genes chrX 3357634 intergenic not near genes chrX 3357695 intergenic not near genes chrX_4_3355001 chrX_3355001 RAL-395 3107 chrX 3415001 3415049 chrX 3421208 3421260 3S18 15 6210 0.0 7.5 3.8 3.1 6259 chrX 3415001 intron,intron CR44999 +,CG12535 - chrX 3418130 intron,intron CR44999 +,CG12535 - chrX 3421260 intron,intron CR44999 +,CG12535 - chrX_15_3415001 chrX_3415001 RAL-395 3108 chrX 3455544 3455558 chrX 3455654 3455668 9 110 3.0 8.0 5.5 1.4 124 chrX 3455544 intron CR44999 + chrX 3455606 intron CR44999 + chrX 3455668 intron CR44999 + chrX_9_3455001 chrX_3455001 RAL-395 3109 chrX 3459958 3460012 chrX 3460061 3460115 20 103 5.0 6.0 5.5 3.1 157 chrX 3459958 intron,intron CR44999 +,CG16782 - chrX 3460036 intron,5` UTR CR44999 +,CG16782 - chrX 3460115 intron,5` UTR CR44999 +,CG16782 - chrX_20_3460001 chrX_3460001 RAL-395 3110 chrX 3472691 3472711 chrX 3472794 3472814 12 103 19.0 16.0 17.5 0.6 123 chrX 3472691 intron,exon CR44999 +,CG12206 - chrX 3472752 intron,exon CR44999 +,CG12206 - chrX 3472814 intron,exon CR44999 +,CG12206 - chrX_12_3470001 chrX_3470001 RAL-395 3111 chrX 3493063 3493117 chrX 3502248 3502302 roo 13 9184 8.5 5.0 6.8 1.7 9239 chrX 3493063 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502302 intron,intron CR44999 +,Gas8 - chrX_13_3495001 chrX_3495001 RAL-395 3112 chrX 3513746 3513791 chrX 3513855 3513900 17 109 3.5 6.5 5.0 2.8 154 chrX 3513746 intron,intron CR44999 +,CG32791 - chrX 3513823 intron,intron CR44999 +,CG32791 - chrX 3513900 intron,intron CR44999 +,CG32791 - chrX_17_3510001 chrX_3510001 RAL-395 3113 chrX 3535383 3535432 chrX 3535502 3535549 13 117 4.5 1.5 3.0 3.2 166 chrX 3535383 intron CG32791 - chrX 3535466 intron CG32791 - chrX 3535549 intron CG32791 - chrX_13_3535001 chrX_3535001 RAL-395 3114 chrX 3597532 3597577 chrX 3619725 3619771 roo 18 22193 5.5 5.5 5.5 2.8 22239 chrX 3597532 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619771 intron AstA-R1 + chrX_18_3605001 chrX_3605001 RAL-395 3115 chrX 3630519 3630573 chrX 3630621 3630675 19 102 2.5 5.5 4.0 3.8 156 chrX 3630519 intron AstA-R1 + chrX 3630597 intron AstA-R1 + chrX 3630675 intron AstA-R1 + chrX_19_3630001 chrX_3630001 RAL-395 3116 chrX 3657395 3657444 chrX 3657501 3657550 23 106 2.5 8.5 5.5 3.5 155 chrX 3657395 intron AstA-R1 + chrX 3657472 intron AstA-R1 + chrX 3657550 intron AstA-R1 + chrX_23_3655001 chrX_3655001 RAL-395 3117 chrX 3662462 3662491 chrX 3662571 3662576 10 106 11.5 1.5 6.5 1.3 114 chrX 3662462 intron AstA-R1 + chrX 3662519 intron AstA-R1 + chrX 3662576 intron AstA-R1 + chrX_10_3660001 chrX_3660001 RAL-395 3118 chrX 3703687 3703701 chrX 3703801 3703815 5 114 5.0 4.0 4.5 0.9 128 chrX 3703687 intergenic CR45102 + chrX 3703751 intergenic CR45102 + chrX 3703815 intergenic not near genes chrX_5_3700001 chrX_3700001 RAL-395 3119 chrX 3713078 3713131 chrX 3713211 3713263 13 134 6.0 6.0 6.0 1.9 185 chrX 3713078 intron Rala - chrX 3713170 intron Rala - chrX 3713263 intron Rala - chrX_13_3710001 chrX_3710001 RAL-395 3120 chrX 3726760 3726785 chrX 3730183 3730208 NOF 9 3423 7.0 14.0 10.5 0.8 3448 chrX 3726760 intron tlk + chrX 3728484 intron tlk + chrX 3730208 intron tlk + chrX_9_3725001 chrX_3725001 RAL-395 3121 chrX 3842326 3842352 chrX 3842570 3842596 pogo 14 244 5.0 4.5 4.8 2.4 270 chrX 3842326 intron ec + chrX 3842461 intron ec + chrX 3842596 intron ec + chrX_14_3840001 chrX_3840001 RAL-395 3122 chrX 3866079 3866124 chrX 3866183 3866228 23 104 5.5 1.0 3.2 5.5 149 chrX 3866079 intron yin - chrX 3866154 intron yin - chrX 3866228 intron yin - chrX_23_3865001 chrX_3865001 RAL-395 3123 chrX 3880475 3880486 chrX 3880587 3880598 4 112 3.0 10.5 6.8 0.5 123 chrX 3880475 intergenic VhaAC39-1 + chrX 3880536 intergenic VhaAC39-1 + chrX 3880598 intergenic VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-395 3124 chrX 3881246 3881303 chrX 3881411 3881468 30 165 10.0 7.5 8.8 3.1 222 chrX 3881246 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881468 exon VhaAC39-1 + chrX_30_3880001 chrX_3880001 RAL-395 3125 chrX 3986837 3986894 chrX 3994496 3994553 412 20 7659 7.5 7.5 7.5 2.4 7716 chrX 3986837 intergenic not near genes chrX 3990695 intergenic not near genes chrX 3994553 intergenic not near genes chrX_20_3990001 chrX_3990001 RAL-395 3126 chrX 4029519 4029561 chrX 4029735 4029777 11 216 6.0 9.5 7.8 1.2 258 chrX 4029519 intergenic not near genes chrX 4029648 intergenic not near genes chrX 4029777 intergenic not near genes chrX_11_4025001 chrX_4025001 RAL-395 3127 chrX 4132642 4132678 chrX 4132835 4132871 6 193 7.5 4.0 5.8 0.9 229 chrX 4132642 3` UTR GlcAT-I + chrX 4132756 3` UTR GlcAT-I + chrX 4132871 intergenic Fas2 -,GlcAT-I + chrX_6_4130001 chrX_4130001 RAL-395 3128 chrX 4145028 4145052 chrX 4145177 4145201 12 149 14.0 4.0 9.0 1.2 173 chrX 4145028 intron Fas2 - chrX 4145114 intron Fas2 - chrX 4145201 intron Fas2 - chrX_12_4145001 chrX_4145001 RAL-395 3129 chrX 4157862 4157910 chrX 4164939 4164987 297 21 7076 13.5 3.5 8.5 2.2 7125 chrX 4157862 intron Fas2 - chrX 4161424 intron Fas2 - chrX 4164987 intron Fas2 - chrX_21_4160001 chrX_4160001 RAL-395 3130 chrX 4203488 4203543 chrX 4203594 4203648 9 105 4.5 8.0 6.2 1.2 160 chrX 4203488 intron Fas2 - chrX 4203568 intron Fas2 - chrX 4203648 intron Fas2 - chrX_9_4200001 chrX_4200001 RAL-395 3131 chrX 4209901 4209929 chrX 4210017 4210045 10 116 0.0 7.0 3.5 2.2 144 chrX 4209901 intergenic not near genes chrX 4209973 intergenic not near genes chrX 4210045 intergenic not near genes chrX_10_4205001 chrX_4205001 RAL-395 3132 chrX 4216314 4216338 chrX 4216419 4216443 12 105 11.5 6.0 8.8 1.2 129 chrX 4216314 intergenic not near genes chrX 4216378 intergenic CG15571 - chrX 4216443 intergenic CG15571 - chrX_12_4215001 chrX_4215001 RAL-395 3133 chrX 4229957 4229990 chrX 4230099 4230132 12 142 8.5 3.5 6.0 1.7 175 chrX 4229957 intergenic not near genes chrX 4230044 intergenic not near genes chrX 4230132 intergenic not near genes chrX_12_4230001 chrX_4230001 RAL-395 3134 chrX 4263575 4263632 chrX 4263688 4263745 18 113 4.5 6.5 5.5 2.8 170 chrX 4263575 intergenic not near genes chrX 4263660 intergenic not near genes chrX 4263745 intergenic not near genes chrX_18_4260001 chrX_4260001 RAL-395 3135 chrX 4293141 4293164 chrX 4293359 4293386 7 220 0.0 0.0 0.0 7.0 245 chrX 4293141 intergenic not near genes chrX 4293264 intergenic not near genes chrX 4293386 intergenic not near genes chrX_7_4290001 chrX_4290001 RAL-395 3136 chrX 4293142 4293159 chrX 4293260 4293275 6 116 0.0 2.5 1.2 2.7 133 chrX 4293142 intergenic not near genes chrX 4293208 intergenic not near genes chrX 4293275 intergenic not near genes chrX_6_4290001 chrX_4290001 RAL-395 3137 chrX 4389377 4389380 chrX 12946233 12946233 8 8556856 6.5 27.0 16.8 0.4 8556856 chrX 4389377 intron CR32773 - chrX 8667805 intergenic not near genes chrX 12946233 3` UTR fne + chrX_8_8665001 chrX_8665001 RAL-395 3138 chrX 4436439 4436497 chrX 4436541 4436606 6 108 9.0 6.5 7.8 0.7 167 chrX 4436439 intron,intron CR32773 -,bi + chrX 4436522 intron,intron CR32773 -,bi + chrX 4436606 intron,intron CR32773 -,bi + chrX_6_4435001 chrX_4435001 RAL-395 3139 chrX 2832383 2832386 chrX 4559069 4559070 4 1726683 25.5 36.0 30.8 0.1 1726687 chrX 2832383 intron kirre + chrX 3695726 intron Mnt + chrX 4559070 intron,exon CR32773 -,CG3546 + chrX_4_3695001 chrX_3695001 RAL-395 3140 chrX 4656035 4656038 chrX 4656148 4656151 4 113 17.0 9.0 13.0 0.3 116 chrX 4656035 intron Cbp80 + chrX 4656093 intron Cbp80 + chrX 4656151 intron Cbp80 + chrX_4_4655001 chrX_4655001 RAL-395 3141 chrX 4656039 4656088 chrX 4656145 4656201 27 112 5.5 8.5 7.0 3.4 162 chrX 4656039 intron Cbp80 + chrX 4656120 intron Cbp80 + chrX 4656201 intron Cbp80 + chrX_27_4655001 chrX_4655001 RAL-395 3142 chrX 4699485 4699508 chrX 4699600 4699625 18 115 10.0 10.5 10.2 1.6 140 chrX 4699485 3` UTR ctp + chrX 4699555 3` UTR ctp + chrX 4699625 3` UTR ctp + chrX_18_4695001 chrX_4695001 RAL-395 3143 chrX 4700368 4700420 chrX 4700737 4700788 jockey 19 368 4.0 7.5 5.8 2.8 420 chrX 4700368 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700788 3` UTR ctp + chrX_19_4700001 chrX_4700001 RAL-395 3144 chrX 4717335 4717387 chrX 4717882 4717934 24 545 3.5 9.5 6.5 3.2 599 chrX 4717335 intron Proc-R + chrX 4717634 intron Proc-R + chrX 4717934 intron Proc-R + chrX_24_4715001 chrX_4715001 RAL-395 3145 chrX 4723549 4723586 chrX 4723655 4723690 18 106 14.0 10.5 12.2 1.4 141 chrX 4723549 exon Proc-R + chrX 4723620 intron Proc-R + chrX 4723690 intron Proc-R + chrX_18_4720001 chrX_4720001 RAL-395 3146 chrX 4731791 4731806 chrX 4736910 4736925 jockey 7 5119 15.0 8.5 11.8 0.5 5134 chrX 4731791 intergenic not near genes chrX 4734358 intergenic not near genes chrX 4736925 intergenic not near genes chrX_7_4730001 chrX_4730001 RAL-395 3147 chrX 4763224 4763276 chrX 4763738 4763790 Stalker4 16 514 8.0 5.0 6.5 2.1 566 chrX 4763224 intergenic not near genes chrX 4763507 intergenic not near genes chrX 4763790 intergenic not near genes chrX_16_4760001 chrX_4760001 RAL-395 3148 chrX 4792354 4792402 chrX 4792813 4792861 jockey 22 457 7.0 7.5 7.2 2.7 507 chrX 4792354 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792861 intergenic not near genes chrX_22_4790001 chrX_4790001 RAL-395 3149 chrX 4827946 4827955 chrX 4835343 4835352 Stalker4 7 7397 21.5 8.5 15.0 0.4 7406 chrX 4827946 intergenic not near genes chrX 4831649 intergenic not near genes chrX 4835352 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-395 3150 chrX 4827956 4828001 chrX 4835338 4835372 Stalker4 25 7392 9.5 7.5 8.5 2.6 7416 chrX 4827956 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835372 intergenic not near genes chrX_25_4830001 chrX_4830001 RAL-395 3151 chrX 4871182 4871218 chrX 4871308 4871344 12 126 8.5 3.5 6.0 1.7 162 chrX 4871182 intron CG42594 + chrX 4871263 intron CG42594 + chrX 4871344 intron CG42594 + chrX_12_4870001 chrX_4870001 RAL-395 3152 chrX 4898242 4898283 chrX 4898346 4898386 10 104 0.0 9.0 4.5 1.8 144 chrX 4898242 intron CG42594 + chrX 4898314 intron CG42594 + chrX 4898386 intron CG42594 + chrX_10_4895001 chrX_4895001 RAL-395 3153 chrX 4975557 4975613 chrX 4975760 4975816 15 203 4.0 7.0 5.5 2.3 259 chrX 4975557 intron CR44833 - chrX 4975686 intron CR44833 - chrX 4975816 intron CR44833 - chrX_15_4975001 chrX_4975001 RAL-395 3154 chrX 4990018 4990069 chrX 4997258 4997309 roo 17 7240 7.0 4.5 5.8 2.5 7291 chrX 4990018 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997309 intron CR44833 - chrX_17_4990001 chrX_4990001 RAL-395 3155 chrX 5089426 5089439 chrX 5089535 5089548 6 109 9.0 7.0 8.0 0.7 122 chrX 5089426 5` UTR,5` UTR CG15465 +,rg + chrX 5089487 5` UTR,5` UTR CG15465 +,rg + chrX 5089548 5` UTR,5` UTR CG15465 +,rg + chrX_6_5085001 chrX_5085001 RAL-395 3156 chrX 5089442 5089451 chrX 5089534 5089560 4 104 7.0 7.0 7.0 0.5 118 chrX 5089442 5` UTR,5` UTR CG15465 +,rg + chrX 5089501 5` UTR,5` UTR CG15465 +,rg + chrX 5089560 5` UTR,5` UTR CG15465 +,rg + chrX_4_5085001 chrX_5085001 RAL-395 3157 chrX 5096250 5096297 chrX 5103841 5103888 springer 18 7591 10.5 5.0 7.8 2.0 7638 chrX 5096250 intron,intron CG15465 +,rg + chrX 5100069 intron,intron CG15465 +,rg + chrX 5103888 intron,intron CG15465 +,rg + chrX_18_5100001 chrX_5100001 RAL-395 3158 chrX 5120640 5120645 chrX 5120770 5120777 7 131 4.5 6.0 5.2 1.1 137 chrX 5120640 intron,intron CG15465 +,rg + chrX 5120708 intron,intron CG15465 +,rg + chrX 5120777 intron,intron CG15465 +,rg + chrX_7_5120001 chrX_5120001 RAL-395 3159 chrX 5134052 5134103 chrX 5134153 5134204 26 102 4.5 5.5 5.0 4.3 152 chrX 5134052 intron,intron CG15465 +,rg + chrX 5134128 intron,intron CG15465 +,rg + chrX 5134204 intron,intron CG15465 +,rg + chrX_26_5130001 chrX_5130001 RAL-395 3160 chrX 5215069 5215125 chrX 5215181 5215237 20 110 8.5 8.0 8.2 2.2 168 chrX 5215069 intron,intron CG15465 +,rg + chrX 5215153 intron,intron CG15465 +,rg + chrX 5215237 intron,intron CG15465 +,rg + chrX_20_5215001 chrX_5215001 RAL-395 3161 chrX 5277532 5277581 chrX 5277731 5277780 13 199 4.5 8.5 6.5 1.7 248 chrX 5277532 intergenic not near genes chrX 5277656 intergenic not near genes chrX 5277780 intergenic not near genes chrX_13_5275001 chrX_5275001 RAL-395 3162 chrX 5280097 5280147 chrX 5280339 5280389 18 242 5.0 8.0 6.5 2.4 292 chrX 5280097 intergenic not near genes chrX 5280243 intergenic not near genes chrX 5280389 intergenic not near genes chrX_18_5280001 chrX_5280001 RAL-395 3163 chrX 5291483 5291512 chrX 5291592 5291619 19 107 6.5 13.0 9.8 1.8 136 chrX 5291483 intergenic not near genes chrX 5291551 intergenic not near genes chrX 5291619 intergenic not near genes chrX_19_5290001 chrX_5290001 RAL-395 3164 chrX 5338682 5338729 chrX 5339961 5340008 jockey 16 1279 7.5 5.5 6.5 2.1 1326 chrX 5338682 intergenic not near genes chrX 5339345 intergenic not near genes chrX 5340008 intergenic SK + chrX_16_5335001 chrX_5335001 RAL-395 3165 chrX 5350309 5350312 chrX 5350414 5350417 4 105 22.0 16.5 19.2 0.2 108 chrX 5350309 intron SK + chrX 5350363 intron SK + chrX 5350417 intron SK + chrX_4_5350001 chrX_5350001 RAL-395 3166 chrX 5500323 5500331 chrX 5500432 5500440 7 109 12.0 18.0 15.0 0.4 117 chrX 5500323 3` UTR CG32762 - chrX 5500382 3` UTR CG32762 - chrX 5500440 exon CG32762 - chrX_7_5500001 chrX_5500001 RAL-395 3167 chrX 5512010 5512065 chrX 5512137 5512196 17 130 2.0 4.0 3.0 4.2 186 chrX 5512010 intergenic not near genes chrX 5512103 intergenic not near genes chrX 5512196 intergenic not near genes chrX_17_5510001 chrX_5510001 RAL-395 3168 chrX 5524821 5524853 chrX 5528706 5528742 412 7 3886 7.5 0.5 4.0 1.4 3921 chrX 5524821 intergenic snoRNA:Psi28S-3342 - chrX 5526782 intergenic not near genes chrX 5528742 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-395 3169 chrX 5537632 5537662 chrX 5537810 5537840 roo 21 177 5.5 11.5 8.5 2.2 208 chrX 5537632 intron Vsx2 - chrX 5537736 intron Vsx2 - chrX 5537840 intron Vsx2 - chrX_21_5535001 chrX_5535001 RAL-395 3170 chrX 5725007 5725058 chrX 5725136 5725187 21 130 6.5 5.0 5.8 3.1 180 chrX 5725007 intron CG32758 - chrX 5725097 intron CG32758 - chrX 5725187 intron CG32758 - chrX_21_5725001 chrX_5725001 RAL-395 3171 chrX 5727399 5727414 chrX 5732164 5732178 Doc 5 4765 5.5 3.5 4.5 0.9 4779 chrX 5727399 intron CG32758 - chrX 5729788 intron CG32758 - chrX 5732178 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-395 3172 chrX 5798859 5798887 chrX 5799047 5799075 10 188 0.0 11.0 5.5 1.5 216 chrX 5798859 intergenic not near genes chrX 5798967 intergenic not near genes chrX 5799075 intergenic not near genes chrX_10_5795001 chrX_5795001 RAL-395 3173 chrX 5883784 5883837 chrX 5884051 5884104 pogo 27 266 6.5 6.5 6.5 3.6 320 chrX 5883784 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884104 intron CR45668 - chrX_27_5880001 chrX_5880001 RAL-395 3174 chrX 5884140 5884187 chrX 5884407 5884454 pogo 22 266 8.5 5.0 6.8 2.8 314 chrX 5884140 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884454 intron CR45668 - chrX_22_5880001 chrX_5880001 RAL-395 3175 chrX 5890333 5890386 chrX 5890435 5890488 26 102 3.0 5.5 4.2 5.0 155 chrX 5890333 intron CR45668 - chrX 5890410 intron CR45668 - chrX 5890488 intron CR45668 - chrX_26_5890001 chrX_5890001 RAL-395 3176 chrX 6080806 6080827 chrX 6080915 6080937 8 110 9.5 6.5 8.0 0.9 131 chrX 6080806 intron CG4660 - chrX 6080872 intron CG4660 - chrX 6080937 intron CG4660 - chrX_8_6080001 chrX_6080001 RAL-395 3177 chrX 6171585 6171595 chrX 6179044 6179053 Quasimodo 6 7459 5.0 5.5 5.2 1.0 7468 chrX 6171585 intron Ca-alpha1T - chrX 6175319 intron Ca-alpha1T - chrX 6179053 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-395 3178 chrX 6209292 6209346 chrX 6209403 6209458 31 112 3.5 4.5 4.0 6.2 166 chrX 6209292 intergenic not near genes chrX 6209375 intergenic not near genes chrX 6209458 intergenic not near genes chrX_31_6205001 chrX_6205001 RAL-395 3179 chrX 6215504 6215531 chrX 6215611 6215638 17 106 12.5 14.5 13.5 1.2 134 chrX 6215504 intergenic not near genes chrX 6215571 intergenic not near genes chrX 6215638 intergenic not near genes chrX_17_6215001 chrX_6215001 RAL-395 3180 chrX 6335219 6335241 chrX 6337721 6337777 Tirant 9 2531 0.0 7.0 3.5 2.0 2558 chrX 6335219 intergenic not near genes chrX 6336498 intergenic not near genes chrX 6337777 5` UTR CG3842 + chrX_9_6335001 chrX_6335001 RAL-395 3181 chrX 6344827 6344860 chrX 6345089 6345131 13 267 0.5 4.0 2.2 4.1 304 chrX 6344827 intergenic not near genes chrX 6344979 intergenic not near genes chrX 6345131 intergenic not near genes chrX_13_6340001 chrX_6340001 RAL-395 3182 chrX 2503963 2503965 chrX 6381542 6381545 4 3877579 23.5 18.0 20.8 0.2 3877582 chrX 2503963 intron trol - chrX 4442754 intron,intron CR32773 -,bi + chrX 6381545 intergenic not near genes chrX_4_4440001 chrX_4440001 RAL-395 3183 chrX 6388640 6388682 chrX 6388742 6388784 15 102 5.5 3.5 4.5 2.7 144 chrX 6388640 intergenic not near genes chrX 6388712 intergenic not near genes chrX 6388784 intergenic not near genes chrX_15_6385001 chrX_6385001 RAL-395 3184 chrX 6388684 6388694 chrX 6388741 6388796 5 93 2.5 3.5 3.0 1.2 112 chrX 6388684 intergenic not near genes chrX 6388740 intergenic not near genes chrX 6388796 intergenic not near genes chrX_5_6385001 chrX_6385001 RAL-395 3185 chrX 6392847 6392897 chrX 6397638 6397688 Doc 29 4790 9.0 8.5 8.8 3.0 4841 chrX 6392847 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397688 intergenic not near genes chrX_29_6395001 chrX_6395001 RAL-395 3186 chrX 6487955 6487982 chrX 6488061 6488090 11 108 12.0 9.0 10.5 1.0 135 chrX 6487955 intron CG42340 - chrX 6488022 intron CG42340 - chrX 6488090 intron CG42340 - chrX_11_6485001 chrX_6485001 RAL-395 3187 chrX 6562795 6562840 chrX 6571303 6571348 Tirant 28 8507 12.0 10.0 11.0 2.3 8553 chrX 6562795 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571348 intron CG34417 + chrX_28_6565001 chrX_6565001 RAL-395 3188 chrX 6591828 6591874 chrX 6591939 6591978 14 110 5.0 0.0 2.5 4.0 150 chrX 6591828 intron Pat1 + chrX 6591903 intron Pat1 + chrX 6591978 intron Pat1 + chrX_14_6590001 chrX_6590001 RAL-395 3189 chrX 6618441 6618475 chrX 6618545 6618578 17 102 9.5 11.5 10.5 1.5 137 chrX 6618441 intron pigs + chrX 6618510 intron pigs + chrX 6618578 intron pigs + chrX_17_6615001 chrX_6615001 RAL-395 3190 chrX 6752972 6753030 chrX 6753103 6753161 11 131 2.5 2.0 2.2 3.4 189 chrX 6752972 intron CG14439 + chrX 6753066 intron CG14439 + chrX 6753161 intron CG14439 + chrX_11_6750001 chrX_6750001 RAL-395 3191 chrX 6792065 6792088 chrX 6792181 6792205 8 117 12.0 7.5 9.8 0.7 140 chrX 6792065 intron C3G - chrX 6792135 intron C3G - chrX 6792205 intron C3G - chrX_8_6790001 chrX_6790001 RAL-395 3192 chrX 6814250 6814266 chrX 6814363 6814372 4 111 6.5 0.0 3.2 1.0 122 chrX 6814250 exon iav + chrX 6814311 intron iav + chrX 6814372 intron iav + chrX_4_6810001 chrX_6810001 RAL-395 3193 chrX 6897587 6897711 chrX 6897651 6897847 30 133 0.0 0.0 0.0 30.0 260 chrX 6897587 intergenic not near genes chrX 6897717 intergenic not near genes chrX 6897847 intergenic not near genes chrX_30_6895001 chrX_6895001 RAL-395 3194 chrX 6901356 6901384 chrX 6901458 6901486 10 98 7.0 10.5 8.8 1.0 130 chrX 6901356 intergenic not near genes chrX 6901421 intergenic not near genes chrX 6901486 intergenic not near genes chrX_10_6900001 chrX_6900001 RAL-395 3195 chrX 6984598 6984653 chrX 6984701 6984756 10 103 4.5 6.0 5.2 1.6 158 chrX 6984598 intron ogre - chrX 6984677 intron ogre - chrX 6984756 intron ogre - chrX_10_6980001 chrX_6980001 RAL-395 3196 chrX 6988509 6988522 chrX 6988620 6988633 6 111 11.0 4.5 7.8 0.7 124 chrX 6988509 intron ogre - chrX 6988571 intron ogre - chrX 6988633 intron ogre - chrX_6_6985001 chrX_6985001 RAL-395 3197 chrX 6989479 6989534 chrX 6989592 6989647 18 113 3.0 6.0 4.5 3.3 168 chrX 6989479 intron ogre - chrX 6989563 intron ogre - chrX 6989647 intron ogre - chrX_18_6985001 chrX_6985001 RAL-395 3198 chrX 7023577 7023634 chrX 7030993 7031050 Tabor 24 7416 11.5 7.5 9.5 2.3 7473 chrX 7023577 intron CG12541 - chrX 7027314 intron CG12541 - chrX 7031050 intron CG12541 - chrX_24_7025001 chrX_7025001 RAL-395 3199 chrX 7055485 7055538 chrX 7055596 7055649 29 111 6.0 6.5 6.2 4.0 164 chrX 7055485 intron CG12541 - chrX 7055567 intron CG12541 - chrX 7055649 intron CG12541 - chrX_29_7055001 chrX_7055001 RAL-395 3200 chrX 7125228 7125273 chrX 7134413 7134458 roo 20 9185 1.0 10.5 5.8 2.9 9230 chrX 7125228 intergenic not near genes chrX 7129843 intergenic not near genes chrX 7134458 intergenic not near genes chrX_20_7125001 chrX_7125001 RAL-395 3201 chrX 7235532 7235540 chrX 7235645 7235653 5 113 5.5 11.5 8.5 0.5 121 chrX 7235532 intron,intron CG9650 +,CR44357 - chrX 7235592 intron,intron CG9650 +,CR44357 - chrX 7235653 intron,intron CG9650 +,CR44357 - chrX_5_7235001 chrX_7235001 RAL-395 3202 chrX 7312222 7312249 chrX 7312325 7312328 4 91 11.5 1.5 6.5 0.5 106 chrX 7312222 intron,intron CR44357 -,CG1677 - chrX 7312275 intron,intron CR44357 -,CG1677 - chrX 7312328 intron,intron CR44357 -,CG1677 - chrX_4_7310001 chrX_7310001 RAL-395 3203 chrX 7345174 7345215 chrX 7345292 7345332 15 117 8.5 4.5 6.5 2.0 158 chrX 7345174 intron,intron CR44357 -,CG1677 - chrX 7345253 intron,intron CR44357 -,CG1677 - chrX 7345332 intron,intron CR44357 -,CG1677 - chrX_15_7345001 chrX_7345001 RAL-395 3204 chrX 7552059 7552088 chrX 7552333 7552362 12 274 16.0 4.0 10.0 1.1 303 chrX 7552059 intergenic not near genes chrX 7552210 intergenic not near genes chrX 7552362 intergenic not near genes chrX_12_7550001 chrX_7550001 RAL-395 3205 chrX 7702508 7702526 chrX 7702626 7702644 9 118 0.0 14.5 7.2 1.1 136 chrX 7702508 intron CHES-1-like - chrX 7702576 intron CHES-1-like - chrX 7702644 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-395 3206 chrX 7702881 7702926 chrX 7703346 7703391 jockey 25 465 12.0 5.0 8.5 2.6 510 chrX 7702881 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703391 intron CHES-1-like - chrX_25_7700001 chrX_7700001 RAL-395 3207 chrX 7720540 7720579 chrX 7720639 7720687 10 107 6.0 5.0 5.5 1.5 147 chrX 7720540 intergenic not near genes chrX 7720614 intergenic not near genes chrX 7720687 intergenic not near genes chrX_10_7720001 chrX_7720001 RAL-395 3208 chrX 7832410 7832462 chrX 7832525 7832576 16 114 2.0 3.0 2.5 4.6 166 chrX 7832410 intron CG1402 + chrX 7832493 intron CG1402 + chrX 7832576 intron CG1402 + chrX_16_7830001 chrX_7830001 RAL-395 3209 chrX 7845411 7845468 chrX 7845543 7845600 25 132 2.0 4.5 3.2 6.0 189 chrX 7845411 intergenic not near genes chrX 7845506 intergenic not near genes chrX 7845600 intergenic not near genes chrX_25_7845001 chrX_7845001 RAL-395 3210 chrX 7845700 7845749 chrX 7847217 7847266 hopper2 9 1517 9.5 3.5 6.5 1.2 1566 chrX 7845700 intergenic not near genes chrX 7846483 intergenic not near genes chrX 7847266 intergenic not near genes chrX_9_7845001 chrX_7845001 RAL-395 3211 chrX 8031401 8031450 chrX 8035736 8035785 Juan 11 4334 12.5 9.0 10.8 0.9 4384 chrX 8031401 intergenic not near genes chrX 8033593 intergenic not near genes chrX 8035785 3` UTR CG2233 - chrX_11_8030001 chrX_8030001 RAL-395 3212 chrX 8085546 8085601 chrX 8085658 8085713 29 112 4.5 7.0 5.8 4.3 167 chrX 8085546 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085713 intron,5` UTR CG2256 -,CR45535 + chrX_29_8085001 chrX_8085001 RAL-395 3213 chrX 8206774 8206800 chrX 8207027 8207031 8 250 2.5 0.0 1.2 3.6 257 chrX 8206774 intron sdt + chrX 8206902 intron sdt + chrX 8207031 intron sdt + chrX_8_8205001 chrX_8205001 RAL-395 3214 chrX 8232136 8232164 chrX 8232239 8232267 12 103 10.5 9.5 10.0 1.1 131 chrX 8232136 intron sdt + chrX 8232202 intron sdt + chrX 8232267 intron sdt + chrX_12_8230001 chrX_8230001 RAL-395 3215 chrX 8357599 8357654 chrX 8357712 8357767 30 113 7.5 5.0 6.2 4.2 168 chrX 8357599 intron nAChRalpha3 - chrX 8357683 intron nAChRalpha3 - chrX 8357767 intron nAChRalpha3 - chrX_30_8355001 chrX_8355001 RAL-395 3216 chrX 8573491 8573542 chrX 8573598 8573649 28 107 9.5 7.0 8.2 3.0 158 chrX 8573491 intron spirit - chrX 8573570 5` UTR spirit - chrX 8573649 intergenic spirit - chrX_28_8570001 chrX_8570001 RAL-395 3217 chrX 8749705 8749754 chrX 8749959 8750008 18 253 9.0 6.5 7.8 2.0 303 chrX 8749705 intergenic not near genes chrX 8749856 intergenic not near genes chrX 8750008 intergenic not near genes chrX_18_8745001 chrX_8745001 RAL-395 3218 chrX 8772222 8772252 chrX 8772326 8772357 20 105 14.0 11.5 12.8 1.4 135 chrX 8772222 intron Lim1 - chrX 8772290 intron Lim1 - chrX 8772357 intron Lim1 - chrX_20_8770001 chrX_8770001 RAL-395 3219 chrX 8812198 8812223 chrX 8812702 8812727 7 504 2.5 7.0 4.8 1.2 529 chrX 8812198 intergenic not near genes chrX 8812462 intergenic not near genes chrX 8812727 intergenic not near genes chrX_7_8810001 chrX_8810001 RAL-395 3220 chrX 8894976 8895000 chrX 8895088 8895112 7 112 6.0 6.0 6.0 1.0 136 chrX 8894976 intron Moe - chrX 8895044 intron Moe - chrX 8895112 intron Moe - chrX_7_8895001 chrX_8895001 RAL-395 3221 chrX 8922311 8922353 chrX 8922770 8922813 jockey 31 459 9.0 8.5 8.8 3.2 502 chrX 8922311 intron rdgA + chrX 8922562 intron rdgA + chrX 8922813 intron rdgA + chrX_31_8920001 chrX_8920001 RAL-395 3222 chrX 8948735 8948789 chrX 8956271 8956325 roo 16 7536 4.0 8.0 6.0 2.3 7590 chrX 8948735 intron rdgA + chrX 8952530 intron rdgA + chrX 8956325 intron rdgA + chrX_16_8950001 chrX_8950001 RAL-395 3223 chrX 8960665 8960719 chrX 8960771 8960781 35 104 2.5 8.5 5.5 5.4 116 chrX 8960665 intron rdgA + chrX 8960723 intron rdgA + chrX 8960781 intron rdgA + chrX_35_8960001 chrX_8960001 RAL-395 3224 chrX 8968842 8968860 chrX 8968944 8968961 6 102 8.5 18.5 13.5 0.4 119 chrX 8968842 intron rdgA + chrX 8968902 intron rdgA + chrX 8968961 intron rdgA + chrX_6_8965001 chrX_8965001 RAL-395 3225 chrX 9062705 9062734 chrX 9062809 9062839 5 103 2.0 0.0 1.0 2.5 134 chrX 9062705 intron CG15365 - chrX 9062772 intron CG15365 - chrX 9062839 intron CG15365 - chrX_5_9060001 chrX_9060001 RAL-395 3226 chrX 9068237 9068280 chrX 9071490 9071534 21 3254 41.0 44.0 42.5 0.5 3297 chrX 9068237 intergenic CG15365 - chrX 9069886 exon,5` UTR CG10970 -,CR45538 + chrX 9071534 intron CG44325 - chrX_21_9065001 chrX_9065001 RAL-395 3227 chrX 9337916 9337959 chrX 9338034 9338077 22 118 8.0 6.5 7.2 2.7 161 chrX 9337916 intron CG34449 - chrX 9337996 intron CG34449 - chrX 9338077 exon CG34449 - chrX_22_9335001 chrX_9335001 RAL-395 3228 chrX 9419376 9419413 chrX 9419701 9419737 18 325 4.5 6.5 5.5 2.8 361 chrX 9419376 intron mgl - chrX 9419556 intron mgl - chrX 9419737 intron mgl - chrX_18_9415001 chrX_9415001 RAL-395 3229 chrX 9439407 9439459 chrX 9439510 9439562 24 101 9.0 10.5 9.8 2.2 155 chrX 9439407 intron mgl - chrX 9439484 intron mgl - chrX 9439562 intron mgl - chrX_24_9435001 chrX_9435001 RAL-395 3230 chrX 9457813 9457848 chrX 9457915 9457951 11 103 9.0 9.5 9.2 1.1 138 chrX 9457813 intron mgl - chrX 9457882 intron mgl - chrX 9457951 intron mgl - chrX_11_9455001 chrX_9455001 RAL-395 3231 chrX 9481707 9481762 chrX 9481819 9481845 24 110 6.5 9.0 7.8 2.7 138 chrX 9481707 intron mgl - chrX 9481776 intron mgl - chrX 9481845 intron mgl - chrX_24_9480001 chrX_9480001 RAL-395 3232 chrX 9508114 9508159 chrX 9509658 9509703 jockey 28 1542 6.5 12.5 9.5 2.7 1589 chrX 9508114 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509703 intron CG32700 - chrX_28_9505001 chrX_9505001 RAL-395 3233 chrX 9575766 9575814 chrX 9576116 9576164 mdg3 17 350 10.5 8.5 9.5 1.6 398 chrX 9575766 intron,exon CG32699 -,CG42395 - chrX 9575965 intron,intron CG32699 -,CG42395 - chrX 9576164 intron,5` UTR CG32699 -,CG42395 - chrX_17_9575001 chrX_9575001 RAL-395 3234 chrX 9758024 9758068 chrX 9758135 9758179 12 110 7.5 0.0 3.8 2.5 155 chrX 9758024 intergenic not near genes chrX 9758102 intergenic not near genes chrX 9758179 intergenic not near genes chrX_12_9755001 chrX_9755001 RAL-395 3235 chrX 9839322 9839367 chrX 9839430 9839475 4 108 0.0 6.0 3.0 1.0 153 chrX 9839322 intron CG32698 + chrX 9839398 intron CG32698 + chrX 9839475 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-395 3236 chrX 9961052 9961111 chrX 9961163 9961222 26 110 6.0 7.5 6.8 3.3 170 chrX 9961052 intergenic not near genes chrX 9961137 intergenic not near genes chrX 9961222 intergenic not near genes chrX_26_9960001 chrX_9960001 RAL-395 3237 chrX 9988498 9988519 chrX 9988628 9988649 7 130 6.0 7.5 6.8 0.9 151 chrX 9988498 intergenic not near genes chrX 9988574 intergenic not near genes chrX 9988649 intergenic not near genes chrX_7_9985001 chrX_9985001 RAL-395 3238 chrX 10118761 10118786 chrX 10119038 10119063 11 276 6.0 2.5 4.2 2.1 302 chrX 10118761 intron,intron RhoU +,CR44894 - chrX 10118912 intron,intron RhoU +,CR44894 - chrX 10119063 intron,intron RhoU +,CR44894 - chrX_11_10115001 chrX_10115001 RAL-395 3239 chrX 10138190 10138243 chrX 10145720 10145773 412 25 7530 10.0 4.5 7.2 3.0 7583 chrX 10138190 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145773 intron,intron RhoU +,CR44894 - chrX_25_10140001 chrX_10140001 RAL-395 3240 chrX 10154259 10154310 chrX 10154361 10154412 18 102 6.0 6.5 6.2 2.5 153 chrX 10154259 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154412 intron,exon CR44894 -,CG12645 + chrX_18_10150001 chrX_10150001 RAL-395 3241 chrX 10196165 10196222 chrX 10196300 10196357 20 133 3.0 4.5 3.8 4.2 192 chrX 10196165 intron CR44894 - chrX 10196261 intron CR44894 - chrX 10196357 intron CR44894 - chrX_20_10195001 chrX_10195001 RAL-395 3242 chrX 10199138 10199143 chrX 10199243 10199248 4 105 0.0 7.0 3.5 0.9 110 chrX 10199138 intron CR44894 - chrX 10199193 intron CR44894 - chrX 10199248 intron CR44894 - chrX_4_10195001 chrX_10195001 RAL-395 3243 chrX 10199145 10199157 chrX 10199239 10199255 5 100 0.0 7.0 3.5 1.1 110 chrX 10199145 intron CR44894 - chrX 10199200 intron CR44894 - chrX 10199255 intron CR44894 - chrX_5_10195001 chrX_10195001 RAL-395 3244 chrX 10199162 10199166 chrX 10199222 10199271 5 95 0.0 4.5 2.2 1.6 109 chrX 10199162 intron CR44894 - chrX 10199216 intron CR44894 - chrX 10199271 intron CR44894 - chrX_5_10195001 chrX_10195001 RAL-395 3245 chrX 10216819 10216850 chrX 10216926 10216957 13 106 13.5 16.5 15.0 0.8 138 chrX 10216819 3` UTR l(1)G0230 + chrX 10216888 3` UTR l(1)G0230 + chrX 10216957 3` UTR l(1)G0230 + chrX_13_10215001 chrX_10215001 RAL-395 3246 chrX 10267297 10267332 chrX 10276473 10276508 roo 13 9176 0.5 6.0 3.2 3.1 9211 chrX 10267297 3` UTR alpha-Man-I - chrX 10271902 intron alpha-Man-I - chrX 10276508 3` UTR alpha-Man-I - chrX_13_10270001 chrX_10270001 RAL-395 3247 chrX 10317528 10317577 chrX 10317632 10317681 29 104 0.0 1.5 0.8 16.1 153 chrX 10317528 intron alpha-Man-I - chrX 10317604 intron alpha-Man-I - chrX 10317681 intron alpha-Man-I - chrX_29_10315001 chrX_10315001 RAL-395 3248 chrX 10431311 10431350 chrX 10431417 10431456 5 104 6.0 4.0 5.0 0.8 145 chrX 10431311 intron CG32683 - chrX 10431384 intron CG32683 - chrX 10431456 intron CG32683 - chrX_5_10430001 chrX_10430001 RAL-395 3249 chrX 10453055 10453097 chrX 10453269 10453314 10 217 3.0 3.5 3.2 2.4 259 chrX 10453055 intron CG32683 - chrX 10453184 intron CG32683 - chrX 10453314 intron CG32683 - chrX_10_10450001 chrX_10450001 RAL-395 3250 chrX 10550307 10550366 chrX 10550410 10550470 16 101 5.5 5.0 5.2 2.6 163 chrX 10550307 intron spri - chrX 10550388 intron spri - chrX 10550470 intron spri - chrX_16_10550001 chrX_10550001 RAL-395 3251 chrX 10550847 10550885 chrX 10552340 10552378 hobo 15 1492 0.0 11.5 5.8 2.2 1531 chrX 10550847 intron spri - chrX 10551612 intron spri - chrX 10552378 intron spri - chrX_15_10550001 chrX_10550001 RAL-395 3252 chrX 10666617 10666672 chrX 10666727 10666782 12 107 4.5 8.5 6.5 1.6 165 chrX 10666617 intron X11Lbeta + chrX 10666700 intron X11Lbeta + chrX 10666782 intron X11Lbeta + chrX_12_10665001 chrX_10665001 RAL-395 3253 chrX 10686028 10686082 chrX 10691191 10691245 roo 22 5163 7.5 3.0 5.2 3.5 5217 chrX 10686028 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691245 intron X11Lbeta + chrX_22_10685001 chrX_10685001 RAL-395 3254 chrX 10772664 10772689 chrX 10772773 10772798 Tirant 11 109 10.0 6.0 8.0 1.2 134 chrX 10772664 intron CG15211 + chrX 10772731 intron CG15211 + chrX 10772798 intron CG15211 + chrX_11_10770001 chrX_10770001 RAL-395 3255 chrX 11026415 11026472 chrX 11026718 11026774 7 301 4.5 6.0 5.2 1.1 359 chrX 11026415 intron CG42339 - chrX 11026594 intron CG42339 - chrX 11026774 intron CG42339 - chrX_7_11025001 chrX_11025001 RAL-395 3256 chrX 11069137 11069177 chrX 11069306 11069344 14 169 7.5 1.0 4.2 2.7 207 chrX 11069137 intergenic not near genes chrX 11069240 intergenic not near genes chrX 11069344 intergenic not near genes chrX_14_11065001 chrX_11065001 RAL-395 3257 chrX 11095980 11096021 chrX 11103108 11103149 HMS-Beagle 9 7128 9.0 7.0 8.0 1.0 7169 chrX 11095980 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103149 intron CG42249 + chrX_9_11095001 chrX_11095001 RAL-395 3258 chrX 11166736 11166787 chrX 11166843 11166888 16 106 5.0 3.0 4.0 3.2 152 chrX 11166736 intergenic not near genes chrX 11166812 intergenic not near genes chrX 11166888 intergenic not near genes chrX_16_11165001 chrX_11165001 RAL-395 3259 chrX 11191868 11191920 chrX 11191971 11192024 21 103 8.5 7.5 8.0 2.3 156 chrX 11191868 intergenic not near genes chrX 11191946 intergenic not near genes chrX 11192024 intergenic not near genes chrX_21_11190001 chrX_11190001 RAL-395 3260 chrX 11254154 11254199 chrX 11254291 11254324 14 136 3.5 6.5 5.0 2.3 170 chrX 11254154 intron CG44422 - chrX 11254239 intron CG44422 - chrX 11254324 intron CG44422 - chrX_14_11250001 chrX_11250001 RAL-395 3261 chrX 11268536 11268596 chrX 11270055 11270097 hopper2 15 1514 10.5 0.0 5.2 2.4 1561 chrX 11268536 intron CG44422 - chrX 11269316 intron CG44422 - chrX 11270097 intron CG44422 - chrX_15_11265001 chrX_11265001 RAL-395 3262 chrX 11287163 11287198 chrX 11287275 11287310 7 112 5.0 5.5 5.2 1.1 147 chrX 11287163 intron CG44422 - chrX 11287236 intron CG44422 - chrX 11287310 intron CG44422 - chrX_7_11285001 chrX_11285001 RAL-395 3263 chrX 11312045 11312085 chrX 11319423 11319464 Stalker2 22 7378 4.0 9.0 6.5 2.9 7419 chrX 11312045 intergenic not near genes chrX 11315754 intergenic not near genes chrX 11319464 intergenic not near genes chrX_22_11315001 chrX_11315001 RAL-395 3264 chrX 11379740 11379792 chrX 11379911 11379962 21 170 8.0 6.5 7.2 2.6 222 chrX 11379740 intron dlg1 + chrX 11379851 intron dlg1 + chrX 11379962 intron dlg1 + chrX_21_11375001 chrX_11375001 RAL-395 3265 chrX 11535021 11535045 chrX 11541517 11541541 Burdock 11 6496 9.0 12.5 10.8 0.9 6520 chrX 11535021 intron Drak + chrX 11538281 intron Drak + chrX 11541541 intron Drak + chrX_11_11535001 chrX_11535001 RAL-395 3266 chrX 11572549 11572586 chrX 11572673 11572709 7 123 32.0 37.0 34.5 0.2 160 chrX 11572549 intergenic Kmn1 -,CG11697 + chrX 11572629 intergenic CG11697 +,Kmn1 - chrX 11572709 5` UTR CG11697 + chrX_7_11570001 chrX_11570001 RAL-395 3267 chrX 11622546 11622602 chrX 11622652 11622708 11 106 11.0 11.0 11.0 0.9 162 chrX 11622546 intron Ptp10D + chrX 11622627 intron Ptp10D + chrX 11622708 intron Ptp10D + chrX_11_11620001 chrX_11620001 RAL-395 3268 chrX 11633401 11633443 chrX 11640481 11640523 297 19 7080 11.5 9.5 10.5 1.7 7122 chrX 11633401 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640523 intron Ptp10D + chrX_19_11635001 chrX_11635001 RAL-395 3269 chrX 11645089 11645124 chrX 11648283 11648320 NOF 12 3196 14.0 2.5 8.2 1.3 3231 chrX 11645089 intron Ptp10D + chrX 11646704 intron Ptp10D + chrX 11648320 intron Ptp10D + chrX_12_11645001 chrX_11645001 RAL-395 3270 chrX 11660836 11660868 chrX 11660944 11660974 16 106 6.0 5.5 5.8 2.4 138 chrX 11660836 intron Ptp10D + chrX 11660905 intron Ptp10D + chrX 11660974 intron Ptp10D + chrX_16_11660001 chrX_11660001 RAL-395 3271 chrX 11684842 11684894 chrX 11684994 11685046 27 152 6.0 0.0 3.0 6.8 204 chrX 11684842 intron bif + chrX 11684944 intron bif + chrX 11685046 intron bif + chrX_27_11680001 chrX_11680001 RAL-395 3272 chrX 11719854 11719897 chrX 11719960 11720003 11 106 5.5 8.0 6.8 1.4 149 chrX 11719854 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11720003 intergenic prtp +,Tango10 + chrX_11_11715001 chrX_11715001 RAL-395 3273 chrX 11798995 11799034 chrX 11799107 11799146 12 112 8.5 6.0 7.2 1.5 151 chrX 11798995 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799146 intron CkIIbeta + chrX_12_11795001 chrX_11795001 RAL-395 3274 chrX 11804647 11804689 chrX 11804777 11804819 17 130 3.5 4.0 3.8 3.5 172 chrX 11804647 intron Hsc70-3 - chrX 11804733 intron Hsc70-3 - chrX 11804819 intron Hsc70-3 - chrX_17_11800001 chrX_11800001 RAL-395 3275 chrX 11828094 11828111 chrX 11828219 11828241 10 128 38.0 41.0 39.5 0.2 147 chrX 11828094 intron rudhira + chrX 11828168 intron rudhira + chrX 11828241 intron rudhira + chrX_10_11825001 chrX_11825001 RAL-395 3276 chrX 11828090 11828149 chrX 11828245 11828274 9 130 36.5 33.5 35.0 0.2 184 chrX 11828090 intron rudhira + chrX 11828182 intron rudhira + chrX 11828274 intron rudhira + chrX_9_11825001 chrX_11825001 RAL-395 3277 chrX 11880906 11880921 chrX 11881013 11881029 8 108 9.0 8.0 8.5 0.8 123 chrX 11880906 exon CG10353 - chrX 11880968 intron CG10353 - chrX 11881029 intron CG10353 - chrX_8_11880001 chrX_11880001 RAL-395 3278 chrX 12126118 12126170 chrX 12126500 12126554 22 381 4.0 7.5 5.8 3.2 436 chrX 12126118 intron Ten-a + chrX 12126336 intron Ten-a + chrX 12126554 intron Ten-a + chrX_22_12125001 chrX_12125001 RAL-395 3279 chrX 12168114 12168154 chrX 12173582 12173619 I-element 18 5466 10.0 3.5 6.8 2.3 5505 chrX 12168114 intron Ten-a + chrX 12170866 intron Ten-a + chrX 12173619 intron Ten-a + chrX_18_12170001 chrX_12170001 RAL-395 3280 chrX 12191572 12191581 chrX 12191686 12191695 4 114 2.5 7.0 4.8 0.7 123 chrX 12191572 intron Ten-a + chrX 12191634 intron Ten-a + chrX 12191695 intron Ten-a + chrX_4_12190001 chrX_12190001 RAL-395 3281 chrX 12202747 12202799 chrX 12202856 12202908 14 109 4.0 4.5 4.2 2.7 161 chrX 12202747 intron Ten-a + chrX 12202828 intron Ten-a + chrX 12202908 intron Ten-a + chrX_14_12200001 chrX_12200001 RAL-395 3282 chrX 12246938 12246990 chrX 12247060 12247112 7 122 4.0 1.0 2.5 2.0 174 chrX 12246938 intron Ten-a + chrX 12247025 intron Ten-a + chrX 12247112 intron Ten-a + chrX_7_12245001 chrX_12245001 RAL-395 3283 chrX 12301931 12301973 chrX 12303262 12303286 X-element 14 1330 8.0 5.5 6.8 1.8 1355 chrX 12301931 intron Ten-a + chrX 12302608 intron Ten-a + chrX 12303286 intron Ten-a + chrX_14_12300001 chrX_12300001 RAL-395 3284 chrX 12350747 12350790 chrX 12350853 12350896 16 106 12.5 0.0 6.2 2.2 149 chrX 12350747 intergenic not near genes chrX 12350822 intergenic not near genes chrX 12350896 intergenic not near genes chrX_16_12350001 chrX_12350001 RAL-395 3285 chrX 12356855 12356876 chrX 12356993 12357011 9 136 5.5 16.5 11.0 0.8 156 chrX 12356855 intergenic not near genes chrX 12356933 intergenic not near genes chrX 12357011 intergenic not near genes chrX_9_12355001 chrX_12355001 RAL-395 3286 chrX 12375467 12375513 chrX 12375591 12375637 13 123 3.5 8.0 5.8 1.9 170 chrX 12375467 intergenic Ir11a - chrX 12375552 intergenic Ir11a - chrX 12375637 exon Ir11a - chrX_13_12375001 chrX_12375001 RAL-395 3287 chrX 12421221 12421236 chrX 12421332 12421347 4 111 7.5 7.0 7.2 0.5 126 chrX 12421221 intergenic not near genes chrX 12421284 intergenic not near genes chrX 12421347 intergenic not near genes chrX_4_12420001 chrX_12420001 RAL-395 3288 chrX 12492973 12492978 chrX 13057292 13057297 4 564319 5.0 21.0 13.0 0.3 564324 chrX 12492973 3` UTR Lsp1alpha + chrX 12775135 3` UTR CG32647 - chrX 13057297 intron rad + chrX_4_12775001 chrX_12775001 RAL-395 3289 chrX 12533770 12533821 chrX 12533873 12533919 7 102 1.5 9.0 5.2 1.1 149 chrX 12533770 intron CG43921 - chrX 12533844 intron CG43921 - chrX 12533919 intron CG43921 - chrX_7_12530001 chrX_12530001 RAL-395 3290 chrX 12718072 12718117 chrX 12718207 12718257 19 139 3.0 4.5 3.8 4.0 185 chrX 12718072 intron,intron Smr -,CR43963 - chrX 12718164 intron,intron Smr -,CR43963 - chrX 12718257 intron,intron Smr -,CR43963 - chrX_19_12715001 chrX_12715001 RAL-395 3291 chrX 12785401 12785434 chrX 12785504 12785534 16 103 5.5 7.5 6.5 2.1 133 chrX 12785401 intergenic Pde9 -,CG32647 - chrX 12785468 intergenic Pde9 - chrX 12785534 intergenic Pde9 - chrX_16_12785001 chrX_12785001 RAL-395 3292 chrX 12839898 12839948 chrX 12840249 12840297 10 350 4.5 5.0 4.8 1.7 399 chrX 12839898 intron Pde9 - chrX 12840098 intron Pde9 - chrX 12840297 intron Pde9 - chrX_10_12840001 chrX_12840001 RAL-395 3293 chrX 12919689 12919745 chrX 12919805 12919861 8 115 2.5 5.5 4.0 1.6 172 chrX 12919689 5` UTR fne + chrX 12919775 intron fne + chrX 12919861 intron fne + chrX_8_12915001 chrX_12915001 RAL-395 3294 chrX 12930570 12930605 chrX 12937712 12937747 HMS-Beagle 10 7142 4.5 15.5 10.0 0.9 7177 chrX 12930570 intron fne + chrX 12934158 intron fne + chrX 12937747 intron fne + chrX_10_12930001 chrX_12930001 RAL-395 3295 chrX 11109417 11109417 chrX 12946234 12946234 4 1836817 17.5 26.5 22.0 0.2 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-395 3296 chrX 4389377 4389377 chrX 12946235 12946235 5 8556858 5.5 26.5 16.0 0.3 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_5_8665001 chrX_8665001 RAL-395 3297 chrX 11109417 11109417 chrX 12946235 12946235 12 1836818 17.5 26.5 22.0 0.5 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_12_12025001 chrX_12025001 RAL-395 3298 chrX 12953865 12953927 chrX 12954029 12954092 12 164 2.5 3.5 3.0 3.0 227 chrX 12953865 intron hec - chrX 12953978 intron hec - chrX 12954092 intron hec - chrX_12_12950001 chrX_12950001 RAL-395 3299 chrX 12960745 12960793 chrX 12960852 12960900 9 107 5.5 3.5 4.5 1.6 155 chrX 12960745 3` UTR CG32642 + chrX 12960822 intergenic CG32642 + chrX 12960900 intergenic CG32642 + chrX_9_12960001 chrX_12960001 RAL-395 3300 chrX 12971665 12971692 chrX 12971768 12971795 20 102 13.5 5.5 9.5 1.9 130 chrX 12971665 intron,exon CR43636 -,CG15721 + chrX 12971730 intron,exon CR43636 -,CG15721 + chrX 12971795 intron,exon CR43636 -,CG15721 + chrX_20_12970001 chrX_12970001 RAL-395 3301 chrX 12977046 12977057 chrX 12977148 12977159 5 102 0.0 9.5 4.8 0.9 113 chrX 12977046 intergenic not near genes chrX 12977102 intergenic not near genes chrX 12977159 intergenic not near genes chrX_5_12975001 chrX_12975001 RAL-395 3302 chrX 13018502 13018523 chrX 13018611 13018633 8 109 5.0 0.5 2.8 2.1 131 chrX 13018502 intron rad + chrX 13018568 intron rad + chrX 13018633 intron rad + chrX_8_13015001 chrX_13015001 RAL-395 3303 chrX 13146572 13146628 chrX 13146686 13146742 18 114 3.0 5.0 4.0 3.6 170 chrX 13146572 intron CG32645 + chrX 13146657 intron CG32645 + chrX 13146742 intron CG32645 + chrX_18_13145001 chrX_13145001 RAL-395 3304 chrX 13168545 13168572 chrX 13168672 13168699 15 127 9.0 5.5 7.2 1.8 154 chrX 13168545 intron CG34411 - chrX 13168622 intron CG34411 - chrX 13168699 intron CG34411 - chrX_15_13165001 chrX_13165001 RAL-395 3305 chrX 13172322 13172380 chrX 13172424 13172482 26 100 9.5 8.5 9.0 2.6 160 chrX 13172322 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172482 intron CG34411 - chrX_26_13170001 chrX_13170001 RAL-395 3306 chrX 13236857 13236900 chrX 13236965 13237011 8 111 0.0 6.0 3.0 2.0 154 chrX 13236857 intron mew - chrX 13236934 intron mew - chrX 13237011 intron mew - chrX_8_13235001 chrX_13235001 RAL-395 3307 chrX 13255192 13255223 chrX 13255277 13255325 12 100 3.0 4.0 3.5 2.7 133 chrX 13255192 intron mew - chrX 13255258 intron mew - chrX 13255325 intron mew - chrX_12_13255001 chrX_13255001 RAL-395 3308 chrX 13269188 13269205 chrX 13269290 13269307 8 102 0.0 6.5 3.2 1.9 119 chrX 13269188 intron HDAC4 - chrX 13269248 intron HDAC4 - chrX 13269307 intron HDAC4 - chrX_8_13265001 chrX_13265001 RAL-395 3309 chrX 13278124 13278169 chrX 13278233 13278278 12 109 10.0 3.0 6.5 1.6 154 chrX 13278124 intron HDAC4 - chrX 13278201 intron HDAC4 - chrX 13278278 intron HDAC4 - chrX_12_13275001 chrX_13275001 RAL-395 3310 chrX 13314394 13314425 chrX 13314515 13314546 7 121 6.0 0.0 3.0 1.8 152 chrX 13314394 intron IP3K2 + chrX 13314470 intron IP3K2 + chrX 13314546 intron IP3K2 + chrX_7_13310001 chrX_13310001 RAL-395 3311 chrX 13374814 13374852 chrX 13374918 13374958 14 105 7.5 3.0 5.2 2.3 144 chrX 13374814 intron CG1640 + chrX 13374886 intron CG1640 + chrX 13374958 intron CG1640 + chrX_14_13370001 chrX_13370001 RAL-395 3312 chrX 13375521 13375537 chrX 13375636 13375651 5 115 1.0 15.5 8.2 0.5 130 chrX 13375521 intron CG1640 + chrX 13375586 intron CG1640 + chrX 13375651 intron CG1640 + chrX_5_13375001 chrX_13375001 RAL-395 3313 chrX 13409153 13409201 chrX 13409265 13409313 17 112 8.0 8.0 8.0 1.9 160 chrX 13409153 3` UTR GstT4 + chrX 13409233 3` UTR GstT4 + chrX 13409313 3` UTR GstT4 + chrX_17_13405001 chrX_13405001 RAL-395 3314 chrX 13429469 13429489 chrX 13430616 13430664 jockey 10 1172 0.5 9.5 5.0 1.7 1195 chrX 13429469 intergenic not near genes chrX 13430066 intergenic not near genes chrX 13430664 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-395 3315 chrX 13463618 13463678 chrX 13469221 13469281 mdg3 13 5602 8.5 2.5 5.5 2.0 5663 chrX 13463618 intron Neto + chrX 13466450 intron Neto + chrX 13469281 intron Neto + chrX_13_13465001 chrX_13465001 RAL-395 3316 chrX 13493779 13493788 chrX 13493882 13493891 6 103 7.0 17.0 12.0 0.5 112 chrX 13493779 intron Neto + chrX 13493835 intron Neto + chrX 13493891 intron Neto + chrX_6_13490001 chrX_13490001 RAL-395 3317 chrX 13546963 13547015 chrX 13547083 13547135 21 120 3.5 4.5 4.0 4.2 172 chrX 13546963 intergenic not near genes chrX 13547049 intergenic not near genes chrX 13547135 intergenic not near genes chrX_21_13545001 chrX_13545001 RAL-395 3318 chrX 13563398 13563452 chrX 13563504 13563558 31 106 3.5 5.0 4.2 6.0 160 chrX 13563398 intergenic CG32633 +,Tango13 + chrX 13563478 intergenic CG32633 +,Tango13 + chrX 13563558 intergenic CG32633 +,Tango13 + chrX_31_13560001 chrX_13560001 RAL-395 3319 chrX 13908773 13908785 chrX 13908877 13908889 4 104 13.0 7.5 10.2 0.4 116 chrX 13908773 intron mamo - chrX 13908831 intron mamo - chrX 13908889 intron mamo - chrX_4_13905001 chrX_13905001 RAL-395 3320 chrX 13908787 13908794 chrX 13908875 13908898 5 101 11.0 7.5 9.2 0.5 111 chrX 13908787 intron mamo - chrX 13908842 intron mamo - chrX 13908898 intron mamo - chrX_5_13905001 chrX_13905001 RAL-395 3321 chrX 13921557 13921561 chrX 13921660 13921663 5 103 22.5 22.0 22.2 0.2 106 chrX 13921557 intron mamo - chrX 13921610 intron mamo - chrX 13921663 intron mamo - chrX_5_13920001 chrX_13920001 RAL-395 3322 chrX 13935493 13935527 chrX 13935602 13935636 22 108 7.0 10.5 8.8 2.2 143 chrX 13935493 intron mamo - chrX 13935564 intron mamo - chrX 13935636 intron mamo - chrX_22_13935001 chrX_13935001 RAL-395 3323 chrX 13937953 13938004 chrX 13941250 13941288 I-element 22 3296 7.0 4.0 5.5 3.4 3335 chrX 13937953 intron mamo - chrX 13939620 intron mamo - chrX 13941288 intron mamo - chrX_22_13935001 chrX_13935001 RAL-395 3324 chrX 13943272 13943301 chrX 13943389 13943418 9 117 0.0 18.5 9.2 0.9 146 chrX 13943272 intron mamo - chrX 13943345 intron mamo - chrX 13943418 intron mamo - chrX_9_13940001 chrX_13940001 RAL-395 3325 chrX 14008956 14009009 chrX 14009071 14009124 23 115 5.0 7.0 6.0 3.3 168 chrX 14008956 intergenic not near genes chrX 14009040 intergenic not near genes chrX 14009124 intergenic not near genes chrX_23_14005001 chrX_14005001 RAL-395 3326 chrX 14104998 14105047 chrX 14114174 14114224 roo 23 9177 4.5 6.5 5.5 3.5 9226 chrX 14104998 intergenic not near genes chrX 14109611 intergenic not near genes chrX 14114224 5` UTR CR44657 + chrX_23_14105001 chrX_14105001 RAL-395 3327 chrX 14142864 14142903 chrX 14142967 14143005 12 103 4.0 5.0 4.5 2.2 141 chrX 14142864 intergenic not near genes chrX 14142934 intergenic not near genes chrX 14143005 intergenic not near genes chrX_12_14140001 chrX_14140001 RAL-395 3328 chrX 14157566 14157586 chrX 14163248 14163269 297 11 5682 12.0 1.5 6.8 1.4 5703 chrX 14157566 intergenic not near genes chrX 14160418 intergenic not near genes chrX 14163269 intergenic not near genes chrX_11_14160001 chrX_14160001 RAL-395 3329 chrX 14209439 14209490 chrX 14209555 14209607 21 117 8.0 5.0 6.5 2.8 168 chrX 14209439 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209523 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209607 intron,intron l(1)G0007 +,l(1)G0469 - chrX_21_14205001 chrX_14205001 RAL-395 3330 chrX 14381391 14381410 chrX 14381571 14381590 5 180 4.5 3.0 3.8 1.0 199 chrX 14381391 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381590 intron dpr8 + chrX_5_14380001 chrX_14380001 RAL-395 3331 chrX 14383938 14383952 chrX 14384048 14384057 9 109 8.0 20.0 14.0 0.6 119 chrX 14383938 intron dpr8 + chrX 14383998 intron dpr8 + chrX 14384057 intron dpr8 + chrX_9_14380001 chrX_14380001 RAL-395 3332 chrX 14416287 14416320 chrX 14421081 14421114 F-element 6 4794 6.5 8.0 7.2 0.7 4827 chrX 14416287 intron dpr8 + chrX 14418700 intron dpr8 + chrX 14421114 intron dpr8 + chrX_6_14415001 chrX_14415001 RAL-395 3333 chrX 14447242 14447296 chrX 14447518 14447572 16 276 9.0 5.0 7.0 2.0 330 chrX 14447242 intron dpr8 + chrX 14447407 intron dpr8 + chrX 14447572 intron dpr8 + chrX_16_14445001 chrX_14445001 RAL-395 3334 chrX 14484796 14484995 chrX 14484924 14485110 22 120 0.0 0.0 0.0 22.0 314 chrX 14484796 intergenic not near genes chrX 14484953 intergenic not near genes chrX 14485110 intergenic not near genes chrX_22_14480001 chrX_14480001 RAL-395 3335 chrX 14515855 14515914 chrX 14515969 14516028 24 113 5.0 4.0 4.5 4.4 173 chrX 14515855 intergenic not near genes chrX 14515942 intergenic not near genes chrX 14516028 intergenic not near genes chrX_24_14515001 chrX_14515001 RAL-395 3336 chrX 14571183 14571192 chrX 14571286 14571295 6 103 1.5 11.5 6.5 0.8 112 chrX 14571183 intergenic not near genes chrX 14571239 intergenic not near genes chrX 14571295 intergenic not near genes chrX_6_14570001 chrX_14570001 RAL-395 3337 chrX 14636441 14636490 chrX 14641908 14641957 I-element 26 5467 9.0 6.0 7.5 3.1 5516 chrX 14636441 intron NetA - chrX 14639199 intron NetA - chrX 14641957 intron NetA - chrX_26_14635001 chrX_14635001 RAL-395 3338 chrX 14714026 14714064 chrX 14714134 14714172 24 108 4.0 7.0 5.5 3.7 146 chrX 14714026 intron NetB - chrX 14714099 intron NetB - chrX 14714172 intron NetB - chrX_24_14710001 chrX_14710001 RAL-395 3339 chrX 14778013 14778050 chrX 14782836 14782873 Doc 13 4823 8.5 12.5 10.5 1.1 4860 chrX 14778013 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782873 intergenic Ag5r2 - chrX_13_14780001 chrX_14780001 RAL-395 3340 chrX 14818736 14818794 chrX 14823966 14824024 copia 25 5230 8.5 7.0 7.8 2.8 5288 chrX 14818736 intron rut - chrX 14821380 intron rut - chrX 14824024 intron rut - chrX_25_14820001 chrX_14820001 RAL-395 3341 chrX 14875060 14875065 chrX 14875169 14875174 4 109 0.0 7.5 3.8 0.8 114 chrX 14875060 intron Flo2 + chrX 14875117 intron Flo2 + chrX 14875174 intron Flo2 + chrX_4_14875001 chrX_14875001 RAL-395 3342 chrX 14883578 14883611 chrX 14883679 14883713 6 102 8.0 0.0 4.0 1.2 135 chrX 14883578 intron Flo2 + chrX 14883646 intron Flo2 + chrX 14883713 intron Flo2 + chrX_6_14880001 chrX_14880001 RAL-395 3343 chrX 14903294 14903352 chrX 14903401 14903459 22 106 4.5 6.0 5.2 3.5 165 chrX 14903294 intron,intron Flo2 +,CG9512 - chrX 14903376 intron,intron Flo2 +,CG9512 - chrX 14903459 intron,intron Flo2 +,CG9512 - chrX_22_14900001 chrX_14900001 RAL-395 3344 chrX 14936842 14936886 chrX 14946125 14946169 roo 17 9283 7.0 4.0 5.5 2.6 9327 chrX 14936842 intron pdgy - chrX 14941506 intron pdgy - chrX 14946169 intron pdgy - chrX_17_14940001 chrX_14940001 RAL-395 3345 chrX 14981706 14981739 chrX 14981811 14981844 8 105 3.5 6.0 4.8 1.4 138 chrX 14981706 intron eag + chrX 14981775 intron eag + chrX 14981844 intron eag + chrX_8_14980001 chrX_14980001 RAL-395 3346 chrX 2912171 2912172 chrX 14985240 14985245 4 12073070 23.5 9.0 16.2 0.2 12073074 chrX 2912171 intron kirre + chrX 8948708 intron rdgA + chrX 14985245 intron eag + chrX_4_8945001 chrX_8945001 RAL-395 3347 chrX 14991753 14991785 chrX 14991857 14991889 23 103 19.0 5.5 12.2 1.7 136 chrX 14991753 intron eag + chrX 14991821 intron eag + chrX 14991889 intron eag + chrX_23_14990001 chrX_14990001 RAL-395 3348 chrX 14991789 14991810 chrX 14991854 14991914 11 100 9.0 7.5 8.2 1.2 125 chrX 14991789 intron eag + chrX 14991852 intron eag + chrX 14991914 intron eag + chrX_11_14990001 chrX_14990001 RAL-395 3349 chrX 15059147 15059164 chrX 15059279 15059296 5 132 12.5 3.0 7.8 0.6 149 chrX 15059147 exon hiw - chrX 15059222 intron hiw - chrX 15059296 intron hiw - chrX_5_15055001 chrX_15055001 RAL-395 3350 chrX 15212242 15212286 chrX 15212369 15212414 17 128 4.5 8.5 6.5 2.3 172 chrX 15212242 intergenic not near genes chrX 15212328 intergenic not near genes chrX 15212414 intergenic not near genes chrX_17_15210001 chrX_15210001 RAL-395 3351 chrX 15265858 15265868 chrX 15265960 15265971 9 103 19.5 15.0 17.2 0.5 113 chrX 15265858 intergenic not near genes chrX 15265914 intergenic not near genes chrX 15265971 intergenic not near genes chrX_9_15265001 chrX_15265001 RAL-395 3352 chrX 15273688 15273712 chrX 15274881 15274905 1360 17 1192 11.5 12.5 12.0 1.3 1217 chrX 15273688 intergenic not near genes chrX 15274296 intergenic not near genes chrX 15274905 intergenic not near genes chrX_17_15270001 chrX_15270001 RAL-395 3353 chrX 15273713 15273732 chrX 15274873 15274925 1360 7 1188 7.5 11.5 9.5 0.7 1212 chrX 15273713 intergenic not near genes chrX 15274319 intergenic not near genes chrX 15274925 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-395 3354 chrX 15369810 15369859 chrX 15369919 15369968 21 109 7.0 10.0 8.5 2.2 158 chrX 15369810 intron acj6 - chrX 15369889 intron acj6 - chrX 15369968 intron acj6 - chrX_21_15365001 chrX_15365001 RAL-395 3355 chrX 15413029 15413079 chrX 15417357 15417406 Juan 32 4327 7.0 9.5 8.2 3.5 4377 chrX 15413029 intron Cngl - chrX 15415218 intron Cngl - chrX 15417406 intron Cngl - chrX_32_15415001 chrX_15415001 RAL-395 3356 chrX 15421893 15421944 chrX 15423430 15423481 pogo 20 1536 7.5 5.5 6.5 2.7 1588 chrX 15421893 intron Cngl - chrX 15422687 intron Cngl - chrX 15423481 intron Cngl - chrX_20_15420001 chrX_15420001 RAL-395 3357 chrX 15536650 15536704 chrX 15536785 15536839 28 134 7.0 9.5 8.2 3.0 189 chrX 15536650 intron Ac13E - chrX 15536744 intron Ac13E - chrX 15536839 intron Ac13E - chrX_28_15535001 chrX_15535001 RAL-395 3358 chrX 15565608 15565662 chrX 15565720 15565774 17 112 6.0 3.5 4.8 2.9 166 chrX 15565608 intergenic not near genes chrX 15565691 intergenic not near genes chrX 15565774 intergenic not near genes chrX_17_15565001 chrX_15565001 RAL-395 3359 chrX 15597038 15597084 chrX 15597183 15597229 7 145 1.0 0.0 0.5 4.7 191 chrX 15597038 intergenic not near genes chrX 15597134 intergenic not near genes chrX 15597229 intergenic not near genes chrX_7_15595001 chrX_15595001 RAL-395 3360 chrX 15678019 15678054 chrX 15678122 15678157 9 102 3.5 9.0 6.2 1.2 138 chrX 15678019 intergenic CG12708 + chrX 15678088 intergenic CG12708 + chrX 15678157 intergenic CG12708 + chrX_9_15675001 chrX_15675001 RAL-395 3361 chrX 15678055 15678068 chrX 15678120 15678171 4 94 3.0 8.5 5.8 0.6 116 chrX 15678055 intergenic CG12708 + chrX 15678113 intergenic CG12708 + chrX 15678171 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-395 3362 chrX 15749625 15749678 chrX 15749757 15749807 17 129 6.0 5.0 5.5 2.6 182 chrX 15749625 intron CG8239 + chrX 15749716 intron CG8239 + chrX 15749807 intron CG8239 + chrX_17_15745001 chrX_15745001 RAL-395 3363 chrX 16156103 16156137 chrX 16156205 16156218 15 100 12.5 6.5 9.5 1.4 115 chrX 16156103 intergenic not near genes chrX 16156160 intergenic not near genes chrX 16156218 intergenic not near genes chrX_15_16155001 chrX_16155001 RAL-395 3364 chrX 16192420 16192438 chrX 16192529 16192547 6 109 13.5 19.0 16.2 0.3 127 chrX 16192420 intergenic not near genes chrX 16192484 intergenic not near genes chrX 16192547 intergenic not near genes chrX_6_16190001 chrX_16190001 RAL-395 3365 chrX 16222762 16222807 chrX 16231138 16231183 roo 14 8376 2.0 5.0 3.5 3.1 8421 chrX 16222762 intergenic not near genes chrX 16226972 intergenic not near genes chrX 16231183 intergenic not near genes chrX_14_16225001 chrX_16225001 RAL-395 3366 chrX 16329398 16329449 chrX 16329503 16329558 12 106 0.0 8.0 4.0 2.4 160 chrX 16329398 intron CG9919 - chrX 16329478 intron CG9919 - chrX 16329558 exon CG9919 - chrX_12_16325001 chrX_16325001 RAL-395 3367 chrX 16340643 16340697 chrX 16349824 16349880 roo 12 9181 0.5 7.0 3.8 2.5 9237 chrX 16340643 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349880 intergenic sl + chrX_12_16345001 chrX_16345001 RAL-395 3368 chrX 16355257 16355272 chrX 16355445 16355460 6 188 12.5 8.0 10.2 0.5 203 chrX 16355257 3` UTR sl + chrX 16355358 3` UTR sl + chrX 16355460 3` UTR sl + chrX_6_16355001 chrX_16355001 RAL-395 3369 chrX 16355273 16355299 chrX 16355444 16355487 10 186 7.0 7.5 7.2 1.2 214 chrX 16355273 3` UTR sl + chrX 16355380 3` UTR sl + chrX 16355487 3` UTR sl + chrX_10_16355001 chrX_16355001 RAL-395 3370 chrX 16387206 16387247 chrX 16390102 16390148 19 2899 46.5 61.0 53.8 0.3 2942 chrX 16387206 exon CG4239 + chrX 16388677 3` UTR CG4239 + chrX 16390148 exon TH1 - chrX_19_16385001 chrX_16385001 RAL-395 3371 chrX 16460872 16460926 chrX 16460994 16461049 12 120 5.5 2.5 4.0 2.4 177 chrX 16460872 3` UTR para - chrX 16460960 3` UTR para - chrX 16461049 3` UTR para - chrX_12_16460001 chrX_16460001 RAL-395 3372 chrX 16492625 16492672 chrX 16498228 16498275 mdg3 16 5603 6.0 11.0 8.5 1.7 5650 chrX 16492625 intron para - chrX 16495450 intron para - chrX 16498275 exon para - chrX_16_16495001 chrX_16495001 RAL-395 3373 chrX 16519912 16519968 chrX 16520024 16520080 26 112 6.0 7.5 6.8 3.3 168 chrX 16519912 intron para - chrX 16519996 intron para - chrX 16520080 intron para - chrX_26_16515001 chrX_16515001 RAL-395 3374 chrX 16529375 16529443 chrX 16529520 16529580 15 139 0.0 8.5 4.2 2.9 205 chrX 16529375 intron para - chrX 16529478 intron para - chrX 16529580 intron para - chrX_15_16525001 chrX_16525001 RAL-395 3375 chrX 16650903 16650930 chrX 16651006 16651033 10 103 11.0 0.5 5.8 1.5 130 chrX 16650903 intergenic CG32573 +,CG42512 + chrX 16650968 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_10_16650001 chrX_16650001 RAL-395 3376 chrX 16707121 16707160 chrX 16707257 16707296 12 136 1.5 8.0 4.8 2.1 175 chrX 16707121 intron CG4678 + chrX 16707208 intron CG4678 + chrX 16707296 intron CG4678 + chrX_12_16705001 chrX_16705001 RAL-395 3377 chrX 16764713 16764724 chrX 16764816 16764827 4 103 9.0 0.5 4.8 0.7 114 chrX 16764713 intron if - chrX 16764770 intron if - chrX 16764827 intron if - chrX_4_16760001 chrX_16760001 RAL-395 3378 chrX 16785249 16785301 chrX 16785379 16785431 28 129 7.0 8.5 7.8 3.2 182 chrX 16785249 3` UTR CG9609 - chrX 16785340 3` UTR CG9609 - chrX 16785431 3` UTR CG9609 - chrX_28_16785001 chrX_16785001 RAL-395 3379 chrX 16870053 16870095 chrX 16870161 16870204 12 107 6.5 4.5 5.5 1.8 151 chrX 16870053 intron CG13003 - chrX 16870128 intron CG13003 - chrX 16870204 intron CG13003 - chrX_12_16870001 chrX_16870001 RAL-395 3380 chrX 16880147 16880159 chrX 16880262 16880270 6 116 14.5 12.0 13.2 0.4 123 chrX 16880147 intergenic not near genes chrX 16880208 intergenic not near genes chrX 16880270 intergenic not near genes chrX_6_16880001 chrX_16880001 RAL-395 3381 chrX 16936001 16936027 chrX 16936445 16936471 jockey 10 444 5.0 4.0 4.5 1.8 470 chrX 16936001 intron CG4928 + chrX 16936236 intron CG4928 + chrX 16936471 intron CG4928 + chrX_10_16935001 chrX_16935001 RAL-395 3382 chrX 1053117 1053123 chrX 16983076 16983076 6 15929957 22.0 25.0 23.5 0.2 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-395 3383 chrX 1053118 1053124 chrX 16983077 16983077 5 15929956 22.0 25.0 23.5 0.2 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-395 3384 chrX 17011943 17011998 chrX 17012052 17012107 31 108 8.5 8.0 8.2 3.4 164 chrX 17011943 intron CG45002 - chrX 17012025 intron CG45002 - chrX 17012107 intron CG45002 - chrX_31_17010001 chrX_17010001 RAL-395 3385 chrX 17061542 17061602 chrX 17061691 17061751 30 148 2.5 6.5 4.5 5.5 209 chrX 17061542 intron CG45002 - chrX 17061646 intron CG45002 - chrX 17061751 intron CG45002 - chrX_30_17060001 chrX_17060001 RAL-395 3386 chrX 17088188 17088200 chrX 17088807 17088819 5 619 2.0 11.0 6.5 0.7 631 chrX 17088188 intergenic not near genes chrX 17088504 intergenic not near genes chrX 17088819 intergenic not near genes chrX_5_17085001 chrX_17085001 RAL-395 3387 chrX 17113547 17113556 chrX 17113655 17113665 4 109 0.0 14.5 7.2 0.5 118 chrX 17113547 intron CG5004 + chrX 17113606 intron CG5004 + chrX 17113665 intron CG5004 + chrX_4_17110001 chrX_17110001 RAL-395 3388 chrX 17122626 17122668 chrX 17122739 17122785 16 116 3.0 9.0 6.0 2.3 159 chrX 17122626 intron CG5004 + chrX 17122706 intron CG5004 + chrX 17122785 intron CG5004 + chrX_16_17120001 chrX_17120001 RAL-395 3389 chrX 17146183 17146225 chrX 17146412 17146454 17 229 7.5 6.5 7.0 2.1 271 chrX 17146183 intron,3` UTR RpS5a -,snoRNA:Psi28S-1135d - chrX 17146318 intron,3` UTR RpS5a -,snoRNA:Psi28S-1135c - chrX 17146454 intron,3` UTR RpS5a -,snoRNA:Psi28S-1135b - chrX_17_17145001 chrX_17145001 RAL-395 3390 chrX 17205823 17205858 chrX 17205939 17205974 10 116 2.5 11.5 7.0 1.2 151 chrX 17205823 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205974 intergenic CG32564 + chrX_10_17205001 chrX_17205001 RAL-395 3391 chrX 17207212 17207226 chrX 17207345 17207356 9 132 19.5 23.0 21.2 0.4 144 chrX 17207212 exon CG32564 + chrX 17207284 exon CG32564 + chrX 17207356 exon CG32564 + chrX_9_17205001 chrX_17205001 RAL-395 3392 chrX 17240995 17241012 chrX 17241099 17241118 9 106 13.5 7.0 10.2 0.8 123 chrX 17240995 intron,3` UTR f +,CG8915 - chrX 17241056 intron,3` UTR f +,CG8915 - chrX 17241118 intron,3` UTR f +,CG8915 - chrX_9_17240001 chrX_17240001 RAL-395 3393 chrX 17282849 17282881 chrX 17282952 17282985 16 103 13.5 0.5 7.0 2.0 136 chrX 17282849 intron CG5445 + chrX 17282917 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_16_17280001 chrX_17280001 RAL-395 3394 chrX 17290047 17290097 chrX 17290145 17290199 13 101 3.0 6.5 4.8 2.2 152 chrX 17290047 intron,intron CG5445 +,Fim - chrX 17290123 intron,intron CG5445 +,Fim - chrX 17290199 intron,intron CG5445 +,Fim - chrX_13_17290001 chrX_17290001 RAL-395 3395 chrX 17303585 17303605 chrX 17303687 17303707 6 102 7.5 9.0 8.2 0.7 122 chrX 17303585 intron CG5445 + chrX 17303646 intron CG5445 + chrX 17303707 intron CG5445 + chrX_6_17300001 chrX_17300001 RAL-395 3396 chrX 17325722 17325741 chrX 17325861 17325880 10 139 0.0 12.0 6.0 1.4 158 chrX 17325722 intergenic not near genes chrX 17325801 intergenic not near genes chrX 17325880 intergenic not near genes chrX_10_17325001 chrX_17325001 RAL-395 3397 chrX 17343347 17343403 chrX 17343458 17343513 12 109 0.0 3.5 1.8 4.3 166 chrX 17343347 intergenic not near genes chrX 17343430 intergenic not near genes chrX 17343513 intergenic not near genes chrX_12_17340001 chrX_17340001 RAL-395 3398 chrX 17352567 17352619 chrX 17352696 17352748 26 129 6.0 6.0 6.0 3.7 181 chrX 17352567 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352748 intergenic not near genes chrX_26_17350001 chrX_17350001 RAL-395 3399 chrX 17357512 17357537 chrX 17357632 17357656 6 120 7.0 5.0 6.0 0.9 144 chrX 17357512 intergenic not near genes chrX 17357584 intergenic not near genes chrX 17357656 intergenic not near genes chrX_6_17355001 chrX_17355001 RAL-395 3400 chrX 17369691 17369711 chrX 17369801 17369821 14 110 5.0 16.5 10.8 1.2 130 chrX 17369691 intergenic not near genes chrX 17369756 intergenic not near genes chrX 17369821 intergenic not near genes chrX_14_17365001 chrX_17365001 RAL-395 3401 chrX 17476591 17476594 chrX 17476689 17476697 4 102 12.5 17.0 14.8 0.3 106 chrX 17476591 intron CG43658 - chrX 17476644 intron CG43658 - chrX 17476697 intron CG43658 - chrX_4_17475001 chrX_17475001 RAL-395 3402 chrX 17477566 17477615 chrX 17477676 17477725 24 110 7.0 7.5 7.2 2.9 159 chrX 17477566 intron CG43658 - chrX 17477646 intron CG43658 - chrX 17477725 intron CG43658 - chrX_24_17475001 chrX_17475001 RAL-395 3403 chrX 17546956 17547002 chrX 17547112 17547157 4 157 4.0 3.0 3.5 0.9 201 chrX 17546956 intron CG43658 - chrX 17547056 intron CG43658 - chrX 17547157 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-395 3404 chrX 17556918 17556930 chrX 17557443 17557455 mdg1 6 525 11.0 8.0 9.5 0.6 537 chrX 17556918 intron CG43658 - chrX 17557186 intron CG43658 - chrX 17557455 intron CG43658 - chrX_6_17555001 chrX_17555001 RAL-395 3405 chrX 17685432 17685469 chrX 17685541 17685578 10 108 3.0 4.5 3.8 2.1 146 chrX 17685432 intron chas - chrX 17685505 intron chas - chrX 17685578 intron chas - chrX_10_17685001 chrX_17685001 RAL-395 3406 chrX 17708804 17708856 chrX 17708907 17708961 13 104 4.5 3.5 4.0 2.6 157 chrX 17708804 intron CG8173 - chrX 17708882 intron CG8173 - chrX 17708961 intron CG8173 - chrX_13_17705001 chrX_17705001 RAL-395 3407 chrX 17741311 17741365 chrX 17741483 17741537 8 172 3.5 7.5 5.5 1.2 226 chrX 17741311 intron CG42684 + chrX 17741424 intron CG42684 + chrX 17741537 intron CG42684 + chrX_8_17740001 chrX_17740001 RAL-395 3408 chrX 17759650 17759664 chrX 17759755 17759769 5 105 8.5 7.5 8.0 0.6 119 chrX 17759650 intergenic not near genes chrX 17759710 intergenic not near genes chrX 17759769 intergenic not near genes chrX_5_17755001 chrX_17755001 RAL-395 3409 chrX 17766330 17766378 chrX 17766454 17766502 20 124 6.5 3.0 4.8 3.4 172 chrX 17766330 intergenic not near genes chrX 17766416 intergenic not near genes chrX 17766502 intergenic not near genes chrX_20_17765001 chrX_17765001 RAL-395 3410 chrX 17792927 17792980 chrX 17796249 17796302 flea 9 3322 9.0 5.0 7.0 1.1 3375 chrX 17792927 intron OdsH + chrX 17794614 intron OdsH + chrX 17796302 intron OdsH + chrX_9_17790001 chrX_17790001 RAL-395 3411 chrX 17911838 17911872 chrX 17911951 17911986 8 114 0.5 6.0 3.2 1.9 148 chrX 17911838 intron CG6847 + chrX 17911912 intron CG6847 + chrX 17911986 intron CG6847 + chrX_8_17910001 chrX_17910001 RAL-395 3412 chrX 17988241 17988291 chrX 17988675 17988725 15 433 10.5 6.0 8.2 1.6 484 chrX 17988241 intron Sh - chrX 17988483 intron Sh - chrX 17988725 intron Sh - chrX_15_17985001 chrX_17985001 RAL-395 3413 chrX 18082815 18082856 chrX 18082916 18082964 12 105 6.0 6.0 6.0 1.7 149 chrX 18082815 intron CG7536 - chrX 18082890 intron CG7536 - chrX 18082964 intron CG7536 - chrX_12_18080001 chrX_18080001 RAL-395 3414 chrX 18175469 18175472 chrX 18175580 18175583 4 111 0.0 12.0 6.0 0.6 114 chrX 18175469 intergenic not near genes chrX 18175526 intergenic not near genes chrX 18175583 intergenic not near genes chrX_4_18175001 chrX_18175001 RAL-395 3415 chrX 18177005 18177046 chrX 18177124 18177165 10 119 4.5 2.0 3.2 2.4 160 chrX 18177005 intergenic not near genes chrX 18177085 intergenic not near genes chrX 18177165 intergenic Frq2 + chrX_10_18175001 chrX_18175001 RAL-395 3416 chrX 18194045 18194100 chrX 18194606 18194661 BS 26 561 6.0 9.5 7.8 3.0 616 chrX 18194045 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194661 intron Frq2 + chrX_26_18190001 chrX_18190001 RAL-395 3417 chrX 18218015 18218063 chrX 18218155 18218206 18 143 6.0 6.0 6.0 2.6 191 chrX 18218015 intron CG33639 - chrX 18218110 intron CG33639 - chrX 18218206 intron CG33639 - chrX_18_18215001 chrX_18215001 RAL-395 3418 chrX 18320482 18320501 chrX 18320640 18320659 10 158 0.0 7.5 3.8 2.1 177 chrX 18320482 intron CG6023 - chrX 18320570 intron CG6023 - chrX 18320659 intron CG6023 - chrX_10_18320001 chrX_18320001 RAL-395 3419 chrX 18337399 18337454 chrX 18337525 18337580 23 126 6.5 8.5 7.5 2.7 181 chrX 18337399 intron CG6123 - chrX 18337490 intron CG6123 - chrX 18337580 intron CG6123 - chrX_23_18335001 chrX_18335001 RAL-395 3420 chrX 18362930 18362945 chrX 18363033 18363048 6 103 0.0 9.0 4.5 1.1 118 chrX 18362930 intergenic CG6106 + chrX 18362989 intergenic CG6106 + chrX 18363048 intergenic not near genes chrX_6_18360001 chrX_18360001 RAL-395 3421 chrX 18429469 18429518 chrX 18434806 18434855 Transpac 17 5337 8.5 7.0 7.8 1.9 5386 chrX 18429469 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434855 intergenic not near genes chrX_17_18430001 chrX_18430001 RAL-395 3422 chrX 18453579 18453617 chrX 18453681 18453719 20 101 11.0 14.0 12.5 1.5 140 chrX 18453579 intron CG32547 - chrX 18453649 intron CG32547 - chrX 18453719 intron CG32547 - chrX_20_18450001 chrX_18450001 RAL-395 3423 chrX 18479863 18479868 chrX 18479975 18479981 5 113 6.0 12.0 9.0 0.5 118 chrX 18479863 intergenic Hayan -,CR45714 +,CG32547 - chrX 18479922 intergenic Hayan -,CR45714 +,CG32547 - chrX 18479981 intergenic Hayan -,CR45714 +,CG32547 - chrX_5_18475001 chrX_18475001 RAL-395 3424 chrX 18490018 18490057 chrX 18490199 18490238 22 180 5.0 7.0 6.0 3.1 220 chrX 18490018 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490238 intergenic not near genes chrX_22_18490001 chrX_18490001 RAL-395 3425 chrX 18524329 18524370 chrX 18524434 18524475 23 105 4.5 8.0 6.2 3.2 146 chrX 18524329 intron Bx + chrX 18524402 intron Bx + chrX 18524475 intron Bx + chrX_23_18520001 chrX_18520001 RAL-395 3426 chrX 18554830 18554865 chrX 18554940 18554975 35 109 7.5 12.0 9.8 3.2 145 chrX 18554830 intron Bx + chrX 18554902 intron Bx + chrX 18554975 intron Bx + chrX_35_18550001 chrX_18550001 RAL-395 3427 chrX 18582132 18582141 chrX 18582236 18582245 4 104 10.0 6.5 8.2 0.4 113 chrX 18582132 intergenic not near genes chrX 18582188 intergenic not near genes chrX 18582245 intergenic not near genes chrX_4_18580001 chrX_18580001 RAL-395 3428 chrX 18582143 18582170 chrX 18582234 18582244 16 99 7.0 6.0 6.5 2.1 101 chrX 18582143 intergenic not near genes chrX 18582194 intergenic not near genes chrX 18582244 intergenic not near genes chrX_16_18580001 chrX_18580001 RAL-395 3429 chrX 18587057 18587066 chrX 18587169 18587178 7 111 6.5 21.5 14.0 0.5 121 chrX 18587057 3` UTR CR43492 - chrX 18587118 3` UTR CR43492 - chrX 18587178 3` UTR CR43492 - chrX_7_18585001 chrX_18585001 RAL-395 3430 chrX 18607286 18607305 chrX 18607534 18607553 14 248 48.5 48.5 48.5 0.3 267 chrX 18607286 exon CG15040 - chrX 18607420 exon CG15040 - chrX 18607553 exon CG15040 - chrX_14_18605001 chrX_18605001 RAL-395 3431 chrX 18645000 18645046 chrX 18645120 18645170 30 123 5.5 7.0 6.2 4.2 170 chrX 18645000 intron Rip11 - chrX 18645085 intron Rip11 - chrX 18645170 intron Rip11 - chrX_30_18645001 chrX_18645001 RAL-395 3432 chrX 18698821 18698876 chrX 18698964 18699018 17 142 4.0 4.5 4.2 3.3 197 chrX 18698821 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18699018 intergenic not near genes chrX_17_18695001 chrX_18695001 RAL-395 3433 chrX 18705346 18705407 chrX 18708234 18708295 19 2888 53.5 53.5 53.5 0.3 2949 chrX 18705346 intergenic not near genes chrX 18706820 intergenic not near genes chrX 18708295 3` UTR CCKLR-17D1 - chrX_19_18705001 chrX_18705001 RAL-395 3434 chrX 18896491 18896549 chrX 18896628 18896686 14 137 2.0 2.5 2.2 4.4 195 chrX 18896491 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896686 intergenic CG7349 + chrX_14_18895001 chrX_18895001 RAL-395 3435 chrX 18923669 18923672 chrX 18923771 18923774 4 102 3.5 9.0 6.2 0.6 105 chrX 18923669 intergenic not near genes chrX 18923722 intergenic not near genes chrX 18923774 intergenic not near genes chrX_4_18920001 chrX_18920001 RAL-395 3436 chrX 18927598 18927612 chrX 18927710 18927721 5 111 11.5 5.5 8.5 0.5 123 chrX 18927598 intergenic not near genes chrX 18927660 intergenic not near genes chrX 18927721 intergenic not near genes chrX_5_18925001 chrX_18925001 RAL-395 3437 chrX 18947477 18947535 chrX 18947596 18947599 30 116 5.0 6.5 5.8 4.4 122 chrX 18947477 intron CG43759 + chrX 18947538 intron CG43759 + chrX 18947599 intron CG43759 + chrX_30_18945001 chrX_18945001 RAL-395 3438 chrX 18957049 18957098 chrX 18965738 18965787 roo 5 8688 2.0 4.5 3.2 1.2 8738 chrX 18957049 intron CG43759 + chrX 18961418 intron CG43759 + chrX 18965787 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-395 3439 chrX 19036404 19036414 chrX 19036506 19036516 7 102 4.5 0.0 2.2 2.2 112 chrX 19036404 intergenic not near genes chrX 19036460 intergenic not near genes chrX 19036516 intergenic not near genes chrX_7_19035001 chrX_19035001 RAL-395 3440 chrX 19060387 19060437 chrX 19065197 19065247 Doc 18 4810 4.5 8.5 6.5 2.4 4860 chrX 19060387 intron CG14190 + chrX 19062817 intron CG14190 + chrX 19065247 intron CG14190 + chrX_18_19060001 chrX_19060001 RAL-395 3441 chrX 19073657 19073698 chrX 19073770 19073811 19 113 10.0 5.5 7.8 2.2 154 chrX 19073657 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073811 intergenic not near genes chrX_19_19070001 chrX_19070001 RAL-395 3442 chrX 19098732 19098782 chrX 19098835 19098885 15 103 0.0 3.0 1.5 6.0 153 chrX 19098732 intergenic not near genes chrX 19098808 intergenic not near genes chrX 19098885 intergenic not near genes chrX_15_19095001 chrX_19095001 RAL-395 3443 chrX 19099628 19099686 chrX 19099737 19099795 27 109 3.5 6.0 4.8 4.7 167 chrX 19099628 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099795 intergenic not near genes chrX_27_19095001 chrX_19095001 RAL-395 3444 chrX 19101188 19101207 chrX 19101329 19101348 13 141 6.5 0.5 3.5 2.9 160 chrX 19101188 intergenic not near genes chrX 19101268 intergenic not near genes chrX 19101348 intergenic not near genes chrX_13_19100001 chrX_19100001 RAL-395 3445 chrX 19125166 19125208 chrX 19125323 19125365 30 156 9.0 1.0 5.0 5.0 199 chrX 19125166 3` UTR tgy - chrX 19125266 3` UTR tgy - chrX 19125365 3` UTR tgy - chrX_30_19125001 chrX_19125001 RAL-395 3446 chrX 19125658 19125695 chrX 19125761 19125805 18 109 9.0 4.5 6.8 2.3 147 chrX 19125658 intron tgy - chrX 19125732 intron tgy - chrX 19125805 intron tgy - chrX_18_19125001 chrX_19125001 RAL-395 3447 chrX 19136527 19136581 chrX 19143474 19143526 412 20 6945 3.5 0.5 2.0 6.7 6999 chrX 19136527 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143526 3` UTR RhoGAP18B - chrX_20_19140001 chrX_19140001 RAL-395 3448 chrX 19182022 19182036 chrX 19182160 19182174 7 137 2.0 4.0 3.0 1.8 152 chrX 19182022 3` UTR CG7453 + chrX 19182098 intergenic CG7453 + chrX 19182174 intergenic CG7453 + chrX_7_19180001 chrX_19180001 RAL-395 3449 chrX 19282217 19282249 chrX 19282368 19282400 16 150 9.0 6.5 7.8 1.8 183 chrX 19282217 3` UTR CG8034 - chrX 19282308 3` UTR CG8034 - chrX 19282400 3` UTR CG8034 - chrX_16_19280001 chrX_19280001 RAL-395 3450 chrX 19356972 19356976 chrX 19358439 19358443 NOF 4 1467 15.5 0.0 7.8 0.5 1471 chrX 19356972 intron kek5 + chrX 19357708 intron kek5 + chrX 19358443 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-395 3451 chrX 19356986 19357016 chrX 19358436 19358501 NOF 7 1472 8.5 0.0 4.2 1.3 1515 chrX 19356986 intron kek5 + chrX 19357744 intron kek5 + chrX 19358501 intron kek5 + chrX_7_19355001 chrX_19355001 RAL-395 3452 chrX 19370549 19370598 chrX 19370666 19370715 20 117 7.5 5.5 6.5 2.7 166 chrX 19370549 intron kek5 + chrX 19370632 intron kek5 + chrX 19370715 intron kek5 + chrX_20_19370001 chrX_19370001 RAL-395 3453 chrX 19380133 19380186 chrX 19380400 19380449 pogo 24 266 11.5 2.5 7.0 3.0 316 chrX 19380133 intron kek5 + chrX 19380291 intron kek5 + chrX 19380449 intron kek5 + chrX_24_19380001 chrX_19380001 RAL-395 3454 chrX 19404603 19404645 chrX 19404727 19404742 8 121 5.0 0.0 2.5 2.3 139 chrX 19404603 intron kek5 + chrX 19404672 intron kek5 + chrX 19404742 intron kek5 + chrX_8_19400001 chrX_19400001 RAL-395 3455 chrX 16983076 16983077 chrX 19404963 19404965 9 2421888 22.5 33.5 28.0 0.3 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_9_18190001 chrX_18190001 RAL-395 3456 chrX 19413034 19413074 chrX 19413345 19413379 20 309 10.0 4.0 7.0 2.5 345 chrX 19413034 intron kek5 + chrX 19413206 intron kek5 + chrX 19413379 intron kek5 + chrX_20_19410001 chrX_19410001 RAL-395 3457 chrX 19447063 19447107 chrX 19447348 19447392 15 285 8.0 6.5 7.2 1.8 329 chrX 19447063 intron kek5 + chrX 19447228 intron kek5 + chrX 19447392 intron kek5 + chrX_15_19445001 chrX_19445001 RAL-395 3458 chrX 19472107 19472153 chrX 19472703 19472748 jockey 11 595 5.0 6.0 5.5 1.7 641 chrX 19472107 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472748 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-395 3459 chrX 19500555 19500751 chrX 19500658 19500864 46 106 4.5 10.5 7.5 5.4 309 chrX 19500555 intron,intron CG14200 +,Pfrx + chrX 19500710 intron,intron CG14200 +,Pfrx + chrX 19500864 intron,intron CG14200 +,Pfrx + chrX_46_19500001 chrX_19500001 RAL-395 3460 chrX 19532843 19532859 chrX 19532946 19532961 9 103 8.5 6.0 7.2 1.1 118 chrX 19532843 3` UTR CG32532 - chrX 19532902 3` UTR CG32532 - chrX 19532961 3` UTR CG32532 - chrX_9_19530001 chrX_19530001 RAL-395 3461 chrX 19541404 19541447 chrX 19541510 19541553 16 105 3.5 7.0 5.2 2.6 149 chrX 19541404 intron CG32532 - chrX 19541478 intron CG32532 - chrX 19541553 intron CG32532 - chrX_16_19540001 chrX_19540001 RAL-395 3462 chrX 19576403 19576588 chrX 19576517 19576691 37 107 0.5 0.0 0.2 30.8 288 chrX 19576403 intron Tao - chrX 19576547 intron Tao - chrX 19576691 intron Tao - chrX_37_19575001 chrX_19575001 RAL-395 3463 chrX 19593920 19593977 chrX 19594031 19594088 20 111 10.0 7.0 8.5 2.1 168 chrX 19593920 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594088 exon CG14205 + chrX_20_19590001 chrX_19590001 RAL-395 3464 chrX 19595706 19595738 chrX 19595821 19595853 9 115 3.5 3.0 3.2 2.1 147 chrX 19595706 intergenic CG14205 + chrX 19595780 intergenic CG14205 + chrX 19595853 intergenic CG14205 + chrX_9_19595001 chrX_19595001 RAL-395 3465 chrX 19689379 19689434 chrX 19689483 19689538 27 104 4.0 4.0 4.0 5.4 159 chrX 19689379 intergenic Mer -,CG14227 - chrX 19689458 intergenic Mer - chrX 19689538 intergenic Mer - chrX_27_19685001 chrX_19685001 RAL-395 3466 chrX 19710047 19710100 chrX 19711859 19711912 S-element 21 1811 0.0 8.0 4.0 4.2 1865 chrX 19710047 intron meso18E - chrX 19710980 intron meso18E - chrX 19711912 intron meso18E - chrX_21_19710001 chrX_19710001 RAL-395 3467 chrX 19769484 19769507 chrX 19769587 19769609 17 102 17.0 8.0 12.5 1.3 125 chrX 19769484 exon vfl - chrX 19769546 intron vfl - chrX 19769609 intron vfl - chrX_17_19765001 chrX_19765001 RAL-395 3468 chrX 19791234 19791283 chrX 19791354 19791402 18 120 5.0 5.5 5.2 2.9 168 chrX 19791234 intergenic not near genes chrX 19791318 intergenic not near genes chrX 19791402 intergenic not near genes chrX_18_19790001 chrX_19790001 RAL-395 3469 chrX 19797325 19797338 chrX 19804664 19804676 Stalker4 6 7339 14.0 5.5 9.8 0.6 7351 chrX 19797325 intergenic not near genes chrX 19801000 intergenic not near genes chrX 19804676 intergenic not near genes chrX_6_19800001 chrX_19800001 RAL-395 3470 chrX 19822804 19822864 chrX 19822997 19823057 28 192 6.0 7.5 6.8 3.6 253 chrX 19822804 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823057 intergenic skpE - chrX_28_19820001 chrX_19820001 RAL-395 3471 chrX 19827330 19827373 chrX 19827434 19827477 11 104 8.0 5.0 6.5 1.5 147 chrX 19827330 intergenic not near genes chrX 19827404 intergenic not near genes chrX 19827477 intergenic not near genes chrX_11_19825001 chrX_19825001 RAL-395 3472 chrX 19884064 19884116 chrX 19884165 19884218 16 100 7.5 5.5 6.5 2.1 154 chrX 19884064 intron Hers + chrX 19884141 intron Hers + chrX 19884218 intron Hers + chrX_16_19880001 chrX_19880001 RAL-395 3473 chrX 19971801 19971826 chrX 19971904 19971929 5 103 9.0 10.0 9.5 0.5 128 chrX 19971801 intergenic not near genes chrX 19971865 intergenic not near genes chrX 19971929 intergenic not near genes chrX_5_19970001 chrX_19970001 RAL-395 3474 chrX 19983858 19983895 chrX 19983956 19984001 14 105 0.0 2.0 1.0 7.0 143 chrX 19983858 intergenic not near genes chrX 19983930 intergenic not near genes chrX 19984001 intergenic not near genes chrX_14_19980001 chrX_19980001 RAL-395 3475 chrX 19992390 19992431 chrX 19992492 19992530 13 102 9.5 9.0 9.2 1.3 140 chrX 19992390 intergenic not near genes chrX 19992460 intergenic not near genes chrX 19992530 intergenic not near genes chrX_13_19990001 chrX_19990001 RAL-395 3476 chrX 20082727 20082782 chrX 20082835 20082890 27 106 5.5 6.0 5.8 4.0 163 chrX 20082727 intergenic not near genes chrX 20082808 intergenic not near genes chrX 20082890 intergenic not near genes chrX_27_20080001 chrX_20080001 RAL-395 3477 chrX 20103932 20103989 chrX 20104048 20104090 23 114 5.5 6.5 6.0 3.3 158 chrX 20103932 intergenic not near genes chrX 20104011 intergenic not near genes chrX 20104090 intergenic not near genes chrX_23_20100001 chrX_20100001 RAL-395 3478 chrX 20125378 20125396 chrX 20125486 20125502 8 108 3.0 6.0 4.5 1.5 124 chrX 20125378 intergenic CG34331 + chrX 20125440 intergenic CG34331 + chrX 20125502 intergenic CG34331 + chrX_8_20125001 chrX_20125001 RAL-395 3479 chrX 20125733 20125753 chrX 20125835 20125856 9 103 18.5 10.5 14.5 0.6 123 chrX 20125733 intergenic CG34331 + chrX 20125794 intergenic not near genes chrX 20125856 intergenic not near genes chrX_9_20125001 chrX_20125001 RAL-395 3480 chrX 20132278 20132307 chrX 20132387 20132416 7 109 11.0 8.0 9.5 0.7 138 chrX 20132278 intergenic not near genes chrX 20132347 intergenic not near genes chrX 20132416 intergenic not near genes chrX_7_20130001 chrX_20130001 RAL-395 3481 chrX 20269914 20269957 chrX 20270022 20270065 8 108 3.0 2.0 2.5 2.3 151 chrX 20269914 intergenic Inx6 - chrX 20269990 intergenic Inx6 - chrX 20270065 intergenic Inx6 - chrX_8_20265001 chrX_20265001 RAL-395 3482 chrX 20271479 20271515 chrX 20271597 20271633 15 118 14.0 0.0 7.0 1.9 154 chrX 20271479 intergenic not near genes chrX 20271556 intergenic not near genes chrX 20271633 intergenic not near genes chrX_15_20270001 chrX_20270001 RAL-395 3483 chrX 20312858 20312909 chrX 20312962 20313013 18 102 4.5 3.5 4.0 3.6 155 chrX 20312858 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20313013 intron CG1504 - chrX_18_20310001 chrX_20310001 RAL-395 3484 chrX 20314249 20314263 chrX 20314356 20314371 11 108 11.0 21.5 16.2 0.6 122 chrX 20314249 intron CG1504 - chrX 20314310 intron CG1504 - chrX 20314371 intron CG1504 - chrX_11_20310001 chrX_20310001 RAL-395 3485 chrX 20320273 20320307 chrX 20320376 20320410 10 103 4.5 6.0 5.2 1.6 137 chrX 20320273 intron CG1504 - chrX 20320342 intron CG1504 - chrX 20320410 intron CG1504 - chrX_10_20320001 chrX_20320001 RAL-395 3486 chrX 20374068 20374128 chrX 20374170 20374229 17 102 1.5 4.0 2.8 4.5 161 chrX 20374068 intergenic not near genes chrX 20374148 intergenic not near genes chrX 20374229 intergenic not near genes chrX_17_20370001 chrX_20370001 RAL-395 3487 chrX 20377325 20377344 chrX 20378818 20378837 hobo 8 1492 8.5 20.5 14.5 0.5 1512 chrX 20377325 intergenic not near genes chrX 20378081 intergenic not near genes chrX 20378837 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-395 3488 chrX 20443161 20443205 chrX 20443263 20443307 9 102 7.0 4.5 5.8 1.3 146 chrX 20443161 exon CG1695 + chrX 20443234 intron CG1695 + chrX 20443307 intron CG1695 + chrX_9_20440001 chrX_20440001 RAL-395 3489 chrX 20467990 20468023 chrX 20468105 20468138 15 115 3.0 0.0 1.5 6.0 148 chrX 20467990 intron GstT3 + chrX 20468064 intron GstT3 + chrX 20468138 intron GstT3 + chrX_15_20465001 chrX_20465001 RAL-395 3490 chrX 20484365 20484406 chrX 20484496 20484537 23 130 5.0 7.0 6.0 3.3 172 chrX 20484365 intron RhoGAP19D - chrX 20484451 intron RhoGAP19D - chrX 20484537 intron RhoGAP19D - chrX_23_20480001 chrX_20480001 RAL-395 3491 chrX 20493914 20493927 chrX 20494078 20494113 11 185 0.0 10.0 5.0 1.8 199 chrX 20493914 intron RhoGAP19D - chrX 20494014 intron RhoGAP19D - chrX 20494113 intron RhoGAP19D - chrX_11_20490001 chrX_20490001 RAL-395 3492 chrX 20517221 20517243 chrX 20517333 20517355 8 112 12.5 6.0 9.2 0.8 134 chrX 20517221 intron Tak1 - chrX 20517288 intron Tak1 - chrX 20517355 intron Tak1 - chrX_8_20515001 chrX_20515001 RAL-395 3493 chrX 20615119 20615130 chrX 20615230 20615241 5 111 4.5 0.0 2.2 1.6 122 chrX 20615119 intron RunxA - chrX 20615180 intron RunxA - chrX 20615241 intron RunxA - chrX_5_20615001 chrX_20615001 RAL-395 3494 chrX 20662288 20662341 chrX 20662397 20662446 12 108 8.5 0.0 4.2 2.3 158 chrX 20662288 intron CG1835 + chrX 20662367 intron CG1835 + chrX 20662446 intron CG1835 + chrX_12_20660001 chrX_20660001 RAL-395 3495 chrX 20713892 20713921 chrX 20714001 20714030 4 109 6.5 6.0 6.2 0.6 138 chrX 20713892 intergenic not near genes chrX 20713961 intergenic not near genes chrX 20714030 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-395 3496 chrX 20719174 20719194 chrX 20719533 20719553 11 359 8.5 8.0 8.2 1.2 379 chrX 20719174 intergenic not near genes chrX 20719364 intergenic not near genes chrX 20719553 intergenic not near genes chrX_11_20715001 chrX_20715001 RAL-395 3497 chrX 20721727 20721874 chrX 20721868 20721997 8 135 0.0 0.0 0.0 8.0 270 chrX 20721727 intergenic not near genes chrX 20721862 intergenic not near genes chrX 20721997 intergenic not near genes chrX_8_20720001 chrX_20720001 RAL-395 3498 chrX 20836699 20836758 chrX 20844327 20844386 roo 19 7627 1.0 4.0 2.5 5.4 7687 chrX 20836699 intron shakB - chrX 20840542 intron shakB - chrX 20844386 intron shakB - chrX_19_20840001 chrX_20840001 RAL-395 3499 chrX 20911891 20911898 chrX 20911994 20912001 7 102 19.0 11.5 15.2 0.4 110 chrX 20911891 intron shakB - chrX 20911946 intron shakB - chrX 20912001 intron shakB - chrX_7_20910001 chrX_20910001 RAL-395 3500 chrX 20911899 20911919 chrX 20911989 20912022 9 101 11.0 11.0 11.0 0.8 123 chrX 20911899 intron shakB - chrX 20911960 intron shakB - chrX 20912022 intron shakB - chrX_9_20910001 chrX_20910001 RAL-395 3501 chrX 20940698 20940739 chrX 20942193 20942234 hobo 19 1494 10.0 11.0 10.5 1.7 1536 chrX 20940698 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942234 intergenic not near genes chrX_19_20940001 chrX_20940001 RAL-395 3502 chrX 20956946 20956955 chrX 20962417 20962426 I-element 4 5471 1.0 2.0 1.5 1.6 5480 chrX 20956946 intergenic not near genes chrX 20959686 intergenic not near genes chrX 20962426 intergenic Ser6 - chrX_4_20955001 chrX_20955001 RAL-395 3503 chrX 21003421 21003450 chrX 21003657 21003693 15 242 6.0 11.0 8.5 1.6 272 chrX 21003421 intergenic not near genes chrX 21003557 intergenic not near genes chrX 21003693 intergenic not near genes chrX_15_21000001 chrX_21000001 RAL-395 3504 chrX 21008638 21008688 chrX 21008752 21008802 7 113 3.0 3.5 3.2 1.7 164 chrX 21008638 intergenic not near genes chrX 21008720 intergenic not near genes chrX 21008802 intergenic not near genes chrX_7_21005001 chrX_21005001 RAL-395 3505 chrX 21009816 21009843 chrX 21009950 21009976 9 132 2.5 10.5 6.5 1.2 160 chrX 21009816 intergenic not near genes chrX 21009896 intergenic not near genes chrX 21009976 intergenic not near genes chrX_9_21005001 chrX_21005001 RAL-395 3506 chrX 21022205 21022239 chrX 21022400 21022434 18 195 7.0 3.5 5.2 2.9 229 chrX 21022205 intergenic not near genes chrX 21022320 intergenic not near genes chrX 21022434 intergenic not near genes chrX_18_21020001 chrX_21020001 RAL-395 3507 chrX 21029787 21029809 chrX 21029954 21029976 6 167 5.0 7.5 6.2 0.8 189 chrX 21029787 3` UTR CG1529 - chrX 21029882 3` UTR CG1529 - chrX 21029976 3` UTR CG1529 - chrX_6_21025001 chrX_21025001 RAL-395 3508 chrX 21061863 21061895 chrX 21062356 21062406 roo 9 509 4.0 6.0 5.0 1.5 543 chrX 21061863 intron bves + chrX 21062134 intron bves + chrX 21062406 intron,3` UTR bves +,CG32512 - chrX_9_21060001 chrX_21060001 RAL-395 3509 chrX 21076303 21076353 chrX 21076408 21076458 18 105 8.5 0.0 4.2 3.5 155 chrX 21076303 intron bves + chrX 21076380 intron bves + chrX 21076458 intron bves + chrX_18_21075001 chrX_21075001 RAL-395 3510 chrX 21077570 21077611 chrX 21077685 21077726 16 113 7.0 4.5 5.8 2.4 156 chrX 21077570 intron bves + chrX 21077648 intron bves + chrX 21077726 intron bves + chrX_16_21075001 chrX_21075001 RAL-395 3511 chrX 21077612 21077625 chrX 21077684 21077738 7 104 3.0 4.5 3.8 1.5 126 chrX 21077612 intron bves + chrX 21077675 intron bves + chrX 21077738 intron bves + chrX_7_21075001 chrX_21075001 RAL-395 3512 chrX 21078742 21078776 chrX 21078848 21078877 8 104 2.5 0.0 1.2 3.6 135 chrX 21078742 intron bves + chrX 21078810 intron bves + chrX 21078877 intron bves + chrX_8_21075001 chrX_21075001 RAL-395 3513 chrX 21086115 21086157 chrX 21087170 21087212 jockey 12 1054 9.0 6.0 7.5 1.4 1097 chrX 21086115 intergenic not near genes chrX 21086664 intergenic not near genes chrX 21087212 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-395 3514 chrX 21088027 21088073 chrX 21088180 21088231 20 157 5.0 3.5 4.2 3.8 204 chrX 21088027 intergenic not near genes chrX 21088129 intergenic not near genes chrX 21088231 intergenic not near genes chrX_20_21085001 chrX_21085001 RAL-395 3515 chrX 21190554 21190825 chrX 21190736 21190932 22 127 1.0 0.0 0.5 14.7 378 chrX 21190554 intergenic not near genes chrX 21190743 intergenic not near genes chrX 21190932 intergenic not near genes chrX_22_21190001 chrX_21190001 RAL-395 3516 chrX 21197034 21197087 chrX 21197138 21197191 24 103 7.0 6.5 6.8 3.1 157 chrX 21197034 intergenic not near genes chrX 21197112 intergenic not near genes chrX 21197191 intergenic not near genes chrX_24_21195001 chrX_21195001 RAL-395 3517 chrX 21264705 21264755 chrX 21264807 21264857 16 102 8.5 5.5 7.0 2.0 152 chrX 21264705 intron CG32521 - chrX 21264781 intron CG32521 - chrX 21264857 intron CG32521 - chrX_16_21260001 chrX_21260001 RAL-395 3518 chrX 21328096 21328144 chrX 21328233 21328281 12 137 4.0 2.5 3.2 2.9 185 chrX 21328096 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328281 intergenic CG1486 +,tty - chrX_12_21325001 chrX_21325001 RAL-395 3519 chrX 21345095 21345143 chrX 21345201 21345250 16 106 6.0 5.5 5.8 2.4 155 chrX 21345095 intergenic fliI +,dod + chrX 21345172 intergenic fliI +,dod + chrX 21345250 intergenic dod +,fliI + chrX_16_21345001 chrX_21345001 RAL-395 3520 chrX 21410617 21410673 chrX 21410722 21410778 18 105 1.0 4.5 2.8 4.7 161 chrX 21410617 intergenic CR45003 - chrX 21410698 intergenic CR45003 - chrX 21410778 intergenic CR45003 - chrX_18_21410001 chrX_21410001 RAL-395 3521 chrX 21428313 21428371 chrX 21428529 21428587 28 214 3.5 6.0 4.8 4.8 274 chrX 21428313 intron CG42343 - chrX 21428450 intron CG42343 - chrX 21428587 intron CG42343 - chrX_28_21425001 chrX_21425001 RAL-395 3522 chrX 21439510 21439566 chrX 21439617 21439673 23 107 5.0 4.5 4.8 4.0 163 chrX 21439510 intron CG42343 - chrX 21439592 intron CG42343 - chrX 21439673 intron CG42343 - chrX_23_21435001 chrX_21435001 RAL-395 3523 chrX 21442811 21442849 chrX 21442915 21442953 10 104 7.5 6.0 6.8 1.3 142 chrX 21442811 intron CG42343 - chrX 21442882 intron CG42343 - chrX 21442953 intron CG42343 - chrX_10_21440001 chrX_21440001 RAL-395 3524 chrX 21447035 21447077 chrX 21447200 21447241 21 163 6.0 5.5 5.8 3.1 206 chrX 21447035 intron CG42343 - chrX 21447138 intron CG42343 - chrX 21447241 intron CG42343 - chrX_21_21445001 chrX_21445001 RAL-395 3525 chrX 21449223 21449262 chrX 21449341 21449381 20 119 8.5 14.5 11.5 1.6 158 chrX 21449223 intron CG42343 - chrX 21449302 intron CG42343 - chrX 21449381 intron CG42343 - chrX_20_21445001 chrX_21445001 RAL-395 3526 chrX 21454842 21454872 chrX 21454952 21454982 8 110 2.5 8.0 5.2 1.3 140 chrX 21454842 intron CG42343 - chrX 21454912 intron CG42343 - chrX 21454982 intron CG42343 - chrX_8_21450001 chrX_21450001 RAL-395 3527 chrX 21455187 21455244 chrX 21455392 21455457 20 210 6.0 0.0 3.0 5.0 270 chrX 21455187 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455457 intron CG42343 - chrX_20_21455001 chrX_21455001 RAL-395 3528 chrX 21458691 21458722 chrX 21464153 21464183 Ivk 19 5462 3.5 9.0 6.2 2.6 5492 chrX 21458691 intergenic not near genes chrX 21461437 intergenic not near genes chrX 21464183 intergenic not near genes chrX_19_21460001 chrX_21460001 RAL-395 3529 chrX 21464919 21464962 chrX 21465024 21465066 17 105 6.5 3.5 5.0 2.8 147 chrX 21464919 intergenic not near genes chrX 21464992 intergenic not near genes chrX 21465066 intergenic not near genes chrX_17_21460001 chrX_21460001 RAL-395 3530 chrX 21474389 21474431 chrX 21474781 21474823 1731 12 392 8.5 9.0 8.8 1.2 434 chrX 21474389 intergenic not near genes chrX 21474606 intergenic not near genes chrX 21474823 intergenic not near genes chrX_12_21470001 chrX_21470001 RAL-395 3531 chrX 21509984 21510004 chrX 21510099 21510119 6 115 0.0 8.5 4.2 1.2 135 chrX 21509984 intron CR45082 - chrX 21510052 intron CR45082 - chrX 21510119 intron CR45082 - chrX_6_21510001 chrX_21510001 RAL-395 3532 chrX 21567934 21567953 chrX 21568040 21568060 5 107 11.5 0.5 6.0 0.7 126 chrX 21567934 intergenic not near genes chrX 21567997 intergenic not near genes chrX 21568060 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-395 3533 chrX 21668231 21668287 chrX 21668342 21668398 24 111 5.0 0.0 2.5 6.9 167 chrX 21668231 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668398 intergenic not near genes chrX_24_21665001 chrX_21665001 RAL-395 3534 chrX 22448246 22448295 chrX 22448411 22448460 19 165 3.0 8.0 5.5 2.9 214 chrX 22448246 intron CG14615 - chrX 22448353 intron CG14615 - chrX 22448460 intron CG14615 - chrX_19_22445001 chrX_22445001 RAL-395 3535 chrX 22478869 22478895 chrX 22479028 22479054 8 159 0.0 13.5 6.8 1.0 185 chrX 22478869 intron CG12576 - chrX 22478962 intron CG12576 - chrX 22479054 intron CG12576 - chrX_8_22475001 chrX_22475001 RAL-395 3536 chrX 22492458 22492514 chrX 22492997 22493053 29 538 5.5 7.5 6.5 3.9 595 chrX 22492458 intron l(1)G0196 + chrX 22492756 intron l(1)G0196 + chrX 22493053 intron l(1)G0196 + chrX_29_22490001 chrX_22490001 RAL-395 3537 chrX 22522614 22522638 chrX 22525460 22525484 NOF 11 2846 10.0 4.5 7.2 1.3 2870 chrX 22522614 intron CG17600 + chrX 22524049 intron CG17600 + chrX 22525484 intron CG17600 + chrX_11_22520001 chrX_22520001 RAL-395 3538 chrX 22564563 22564584 chrX 22575109 22575130 jockey 13 10546 14.0 11.5 12.8 0.9 10567 chrX 22564563 intergenic not near genes chrX 22569846 intergenic not near genes chrX 22575130 intergenic not near genes chrX_13_22565001 chrX_22565001 RAL-395 3539 chrX 22620474 22620513 chrX 22626767 22626806 297 13 6293 5.5 7.5 6.5 1.7 6332 chrX 22620474 intron Cda4 - chrX 22623640 intron Cda4 - chrX 22626806 intron Cda4 - chrX_13_22620001 chrX_22620001 RAL-395 3540 chrX 22586014 22586032 chrX 22644842 22644855 4 58824 27.0 13.5 20.2 0.2 58841 chrX 22586014 intron Cda4 - chrX 22615434 intron Cda4 - chrX 22644855 intergenic not near genes chrX_4_22615001 chrX_22615001 RAL-395 3541 chrX 22660548 22660601 chrX 22660659 22660711 14 109 5.0 5.5 5.2 2.3 163 chrX 22660548 intron CR44997 + chrX 22660630 intron CR44997 + chrX 22660711 intron CR44997 + chrX_14_22660001 chrX_22660001 RAL-395 3542 chrX 22697478 22697527 chrX 22701799 22701807 Juan 21 4320 9.0 13.0 11.0 1.8 4329 chrX 22697478 intron CR44997 + chrX 22699642 intron CR44997 + chrX 22701807 intron CR44997 + chrX_21_22695001 chrX_22695001 RAL-395 3543 chrX 22734436 22734448 chrX 22734541 22734553 7 105 6.0 8.5 7.2 0.9 117 chrX 22734436 intron CR44997 + chrX 22734494 intron CR44997 + chrX 22734553 intron CR44997 + chrX_7_22730001 chrX_22730001 RAL-395 3544 chrX 22771482 22771526 chrX 22774799 22774843 297 16 3317 3.5 3.0 3.2 3.8 3361 chrX 22771482 intron CR44997 + chrX 22773162 intron CR44997 + chrX 22774843 intron CR44997 + chrX_16_22770001 chrX_22770001 RAL-395 3545 chrX 22862385 22862389 chrX 22862572 22862576 6 188 35.0 18.0 26.5 0.2 191 chrX 22862385 intron CG42346 + chrX 22862480 intron CG42346 + chrX 22862576 intron CG42346 + chrX_6_22860001 chrX_22860001 RAL-395 3546 chrX 22870843 22870899 chrX 22870960 22871016 14 117 7.5 6.5 7.0 1.8 173 chrX 22870843 intron,3` UTR CG42346 +,CR43656 - chrX 22870930 intron,3` UTR CG42346 +,CR43656 - chrX 22871016 intron,3` UTR CG42346 +,CR43656 - chrX_14_22870001 chrX_22870001 RAL-395 3547 chrX 22922494 22922543 chrX 22922600 22922649 15 105 7.5 9.5 8.5 1.6 155 chrX 22922494 intergenic not near genes chrX 22922572 intergenic not near genes chrX 22922649 intergenic not near genes chrX_15_22920001 chrX_22920001 RAL-395 3548 chrX 22963040 22963086 chrX 22963142 22963188 16 101 6.5 3.5 5.0 2.7 148 chrX 22963040 intergenic not near genes chrX 22963114 intergenic not near genes chrX 22963188 intergenic not near genes chrX_16_22960001 chrX_22960001 RAL-395 3549 chrX 22982812 22982871 chrX 22983021 22983080 21 208 8.0 6.0 7.0 2.6 268 chrX 22982812 3` UTR,exon stnA -,stnB - chrX 22982946 intron,intron stnA -,stnB - chrX 22983080 intron,intron stnA -,stnB - chrX_21_22980001 chrX_22980001 RAL-395 3550 chrX 22987082 22987127 chrX 22989767 22989812 Burdock 11 2685 2.5 3.0 2.8 2.9 2730 chrX 22987082 intron,intron stnA -,stnB - chrX 22988447 intron,intron stnA -,stnB - chrX 22989812 intron,intron stnA -,stnB - chrX_11_22985001 chrX_22985001 RAL-395 3551 chrX 22996291 22996337 chrX 23003551 23003597 roo 11 7260 9.5 11.5 10.5 1.0 7306 chrX 22996291 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003597 intron,intron stnA -,stnB - chrX_11_22995001 chrX_22995001 RAL-395 3552 chrY 975618 975820 chrY 975761 976010 41 136 309.5 312.5 311.0 0.1 392 chrY 975618 intergenic not near genes chrY 975814 intergenic not near genes chrY 976010 intergenic not near genes chrY_41_975001 chrY_975001 RAL-395 3553 chrY 1419878 1419913 chrY 1420157 1420192 12 280 17.5 16.0 16.8 0.7 314 chrY 1419878 intergenic not near genes chrY 1420035 intergenic not near genes chrY 1420192 intergenic not near genes chrY_12_1420001 chrY_1420001 RAL-395 3554 chrY 1420500 1420649 chrY 1420736 1420751 4 136 14.5 20.0 17.2 0.2 251 chrY 1420500 intergenic not near genes chrY 1420626 intergenic not near genes chrY 1420751 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-395 3555 chrY 1420638 1420650 chrY 1420758 1420770 7 120 14.5 19.0 16.8 0.4 132 chrY 1420638 intergenic not near genes chrY 1420704 intergenic not near genes chrY 1420770 intergenic not near genes chrY_7_1420001 chrY_1420001 RAL-395 3556 chrY 3664608 3664624 chrY 3664737 3664753 5 127 2.5 3.5 3.0 1.2 145 chrY 3664608 intergenic CG40948 + chrY 3664680 intergenic CG40948 + chrY 3664753 intergenic CG40948 + chrY_5_3660001 chrY_3660001 RAL-395