SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
12	chr2L	1570684	1570711	chr2L	1573556	1573583	F-element	6	2872	3.5	1.0	2.2	1.9	2899	chr2L	1570684	intron	haf +	chr2L	1572134	intron	haf +	chr2L	1573583	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-386
14	chr2L	1678984	1678996	chr2L	1686447	1686461	blood	4	7463	0.5	1.5	1.0	2.0	7477	chr2L	1678984	intron	chinmo +	chr2L	1682722	intron	chinmo +	chr2L	1686461	intron	chinmo +	chr2L_4_1680001	chr2L_1680001	RAL-386
15	chr2L	1711366	1711388	chr2L	1711681	1711681	mdg3	4	314	2.5	4.5	3.5	0.9	315	chr2L	1711366	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711524	3` UTR	frtz -	chr2L	1711681	3` UTR	frtz -	chr2L_4_1710001	chr2L_1710001	RAL-386
49	chr2L	6426866	6426887	chr2L	6445120	6445146	roo	4	18258	1.0	1.5	1.2	1.8	18280	chr2L	6426866	3` UTR	CG9527 -	chr2L	6436006	intron	CG9527 -	chr2L	6445146	exon	CG9527 -	chr2L_4_6435001	chr2L_6435001	RAL-386
54	chr2L	7343324	7343357	chr2L	7350439	7350471	roo	5	7115	2.0	0.5	1.2	2.3	7147	chr2L	7343324	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350471	intron	Wnt6 +	chr2L_5_7345001	chr2L_7345001	RAL-386
66	chr2L	10862847	10862873	chr2L	10864458	10864474	Rt1c	5	1607	2.0	5.5	3.8	1.0	1627	chr2L	10862847	3` UTR	CR43807 -	chr2L	10863660	intron	CR43807 -	chr2L	10864474	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	RAL-386
75	chr2L	13405658	13405674	chr2L	13410450	13410469	Doc	9	4794	2.0	2.5	2.2	2.8	4811	chr2L	13405658	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410469	intron	CG7110 +	chr2L_9_13405001	chr2L_13405001	RAL-386
82	chr2L	14803887	14803912	chr2L	14809084	14809114	copia	4	5200	0.5	0.0	0.2	3.3	5227	chr2L	14803887	intergenic	not near genes	chr2L	14806500	intergenic	not near genes	chr2L	14809114	intergenic	not near genes	chr2L_4_14805001	chr2L_14805001	RAL-386
85	chr2L	15446059	15446084	chr2L	15453526	15453553	blood	4	7468	0.5	0.0	0.2	3.3	7494	chr2L	15446059	intergenic	not near genes	chr2L	15449806	intergenic	not near genes	chr2L	15453553	intergenic	not near genes	chr2L_4_15445001	chr2L_15445001	RAL-386
86	chr2L	15586413	15586427	chr2L	15593465	15593478	297	4	7052	1.0	2.0	1.5	1.6	7065	chr2L	15586413	intergenic	not near genes	chr2L	15589946	intergenic	not near genes	chr2L	15593478	intergenic	not near genes	chr2L_4_15585001	chr2L_15585001	RAL-386
88	chr2L	16071771	16071772	chr2L	16217660	16217660	copia	10	145889	6.5	2.0	4.2	1.9	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-386
91	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	12	145889	6.5	2.0	4.2	2.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_12_16140001	chr2L_16140001	RAL-386
92	chr2L	16280274	16280286	chr2L	16281422	16281449	1360	4	1159	4.0	2.0	3.0	1.0	1175	chr2L	16280274	intron	crp -	chr2L	16280862	intron	crp -	chr2L	16281449	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-386
101	chr2L	19620092	19620118	chr2L	19621080	19621107	jockey	6	988	2.5	0.0	1.2	2.7	1015	chr2L	19620092	intron	Lar +	chr2L	19620600	intron	Lar +	chr2L	19621107	intron	Lar +	chr2L_6_19620001	chr2L_19620001	RAL-386
103	chr2L	19703542	19703556	chr2L	19712677	19712691	roo	4	9135	3.5	0.5	2.0	1.3	9149	chr2L	19703542	intron	Lar +	chr2L	19708116	intron	Lar +	chr2L	19712691	intron	Lar +	chr2L_4_19705001	chr2L_19705001	RAL-386
104	chr2L	19737354	19737383	chr2L	19740823	19740851	1360	4	3462	0.0	0.0	0.0	4.0	3497	chr2L	19737354	intergenic	Nf-YB +	chr2L	19739102	intergenic	not near genes	chr2L	19740851	intergenic	not near genes	chr2L_4_19735001	chr2L_19735001	RAL-386
110	chr2L	21020271	21020306	chr2L	21023948	21023982	NOF	4	3676	0.5	0.0	0.2	3.3	3711	chr2L	21020271	intron	CG42238 -	chr2L	21022126	intron	CG42238 -	chr2L	21023982	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-386
126	chr2R	7608408	7608434	chr2R	7613609	7613637	I-element	4	5196	0.0	1.0	0.5	2.7	5229	chr2R	7608408	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613637	intron	CG1358 -	chr2R_4_7610001	chr2R_7610001	RAL-386
128	chr2R	7869195	7869215	chr2R	7873973	7874000	Doc	5	4784	0.0	2.0	1.0	2.5	4805	chr2R	7869195	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7874000	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-386
134	chr2R	8398216	8398234	chr2R	8402987	8403014	Doc	4	4778	4.0	1.0	2.5	1.1	4798	chr2R	8398216	intron	CG2121 -	chr2R	8400615	intron	CG2121 -	chr2R	8403014	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-386
138	chr2R	8722768	8722795	chr2R	8723007	8723007	pogo	7	232	1.0	3.5	2.2	2.2	239	chr2R	8722768	intron	CG14767 -	chr2R	8722888	intron	CG14767 -	chr2R	8723007	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	RAL-386
141	chr2R	9151316	9151335	chr2R	9157785	9157805	Burdock	7	6467	2.5	1.0	1.8	2.5	6489	chr2R	9151316	3` UTR	CG30345 +	chr2R	9154560	intergenic	not near genes	chr2R	9157805	intergenic	CG8008 -	chr2R_7_9150001	chr2R_9150001	RAL-386
143	chr2R	9352253	9352257	chr2R	9361401	9361406	roo	4	9149	3.0	4.5	3.8	0.8	9153	chr2R	9352253	intron	CG13954 -	chr2R	9356830	intron	CG13954 -	chr2R	9361406	intron	CG13954 -	chr2R_4_9355001	chr2R_9355001	RAL-386
148	chr2R	10005848	10005878	chr2R	10007012	10007042	1360	6	1164	0.5	1.5	1.0	3.0	1194	chr2R	10005848	intron	Pka-R2 -	chr2R	10006445	intron	Pka-R2 -	chr2R	10007042	intron	Pka-R2 -	chr2R_6_10005001	chr2R_10005001	RAL-386
155	chr2R	11472651	11472678	chr2R	11473848	11473874	pogo	6	1196	1.5	0.5	1.0	3.0	1223	chr2R	11472651	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473874	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-386
161	chr2R	12481147	12481170	chr2R	12482940	12482958	roo	7	1793	2.5	2.5	2.5	2.0	1811	chr2R	12481147	exon	Dh44-R2 +	chr2R	12482052	intron	Dh44-R2 +	chr2R	12482958	intron	Dh44-R2 +	chr2R_7_12480001	chr2R_12480001	RAL-386
162	chr2R	12501699	12501723	chr2R	12503860	12503866	Rt1c	4	2155	1.0	4.5	2.8	1.1	2167	chr2R	12501699	intron	fdl -	chr2R	12502782	intron	fdl -	chr2R	12503866	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-386
165	chr2R	13905607	13905630	chr2R	13907589	13907611	Rt1a	6	1977	2.5	3.0	2.8	1.6	2004	chr2R	13905607	intron	shot -	chr2R	13906609	intron	shot -	chr2R	13907611	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-386
180	chr2R	17784025	17784057	chr2R	17784265	17784277	pogo	9	236	2.0	4.0	3.0	2.2	252	chr2R	17784025	intergenic	mir-31a -	chr2R	17784151	intergenic	mir-31a -	chr2R	17784277	intergenic	mir-31a -	chr2R_9_17780001	chr2R_17780001	RAL-386
183	chr2R	18575819	18575830	chr2R	18582005	18582010	3S18	6	6185	1.0	4.5	2.8	1.6	6191	chr2R	18575819	intron	GEFmeso -	chr2R	18578914	intron	GEFmeso -	chr2R	18582010	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	RAL-386
184	chr2R	18590866	18590898	chr2R	18600017	18600050	roo	8	9151	1.0	2.0	1.5	3.2	9184	chr2R	18590866	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600050	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-386
190	chr2R	20739448	20739474	chr2R	20744215	20744242	F-element	4	4766	0.0	4.5	2.2	1.2	4794	chr2R	20739448	intron	dpr +	chr2R	20741845	intron	dpr +	chr2R	20744242	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-386
191	chr2R	20783311	20783333	chr2R	20788083	20788105	F-element	4	4770	0.5	2.0	1.2	1.8	4794	chr2R	20783311	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-386
200	chr2R	22349690	22349725	chr2R	22351473	22351509	jockey	8	1779	1.5	0.0	0.8	4.4	1819	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351509	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-386
212	chr2R	23529575	23529601	chr2R	23537148	23537162	412	9	7569	4.5	4.0	4.2	1.7	7587	chr2R	23529575	intron	bw -	chr2R	23533368	intron	bw -	chr2R	23537162	exon	bw -	chr2R_9_23530001	chr2R_23530001	RAL-386
217	chr2R	23914300	23914330	chr2R	23921923	23921954	412	6	7619	3.0	3.5	3.2	1.4	7654	chr2R	23914300	exon	kcc +	chr2R	23918127	intron	kcc +	chr2R	23921954	intron	kcc +	chr2R_6_23915001	chr2R_23915001	RAL-386
220	chr2R	24147074	24147096	chr2R	24154646	24154662	412	7	7572	2.0	3.5	2.8	1.8	7588	chr2R	24147074	intron	Dat +	chr2R	24150868	intron	Dat +	chr2R	24154662	intron	Dat +	chr2R_7_24150001	chr2R_24150001	RAL-386
223	chr2R	24727888	24727917	chr2R	24735392	24735405	mdg1	11	7504	2.0	5.0	3.5	2.4	7517	chr2R	24727888	intron	Mid1 -	chr2R	24731646	intron	Mid1 -	chr2R	24735405	intron	Mid1 -	chr2R_11_24730001	chr2R_24730001	RAL-386
224	chr2R	24763614	24763643	chr2R	24765590	24765619	G2	12	1974	1.5	7.0	4.2	2.3	2005	chr2R	24763614	exon	CG3894 +	chr2R	24764616	intron	CG3894 +	chr2R	24765619	exon	CG3894 +	chr2R_12_24760001	chr2R_24760001	RAL-386
233	chr3L	402692	402702	chr3L	409743	409755	297	4	7051	2.5	1.5	2.0	1.3	7063	chr3L	402692	intergenic	not near genes	chr3L	406224	intergenic	not near genes	chr3L	409755	intergenic	not near genes	chr3L_4_405001	chr3L_405001	RAL-386
236	chr3L	925181	925209	chr3L	932604	932632	mdg1	6	7424	1.0	1.5	1.2	2.7	7451	chr3L	925181	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932632	intron	Glut1 +	chr3L_6_925001	chr3L_925001	RAL-386
237	chr3L	939774	939799	chr3L	940895	940920	jockey	4	1120	3.5	2.5	3.0	1.0	1146	chr3L	939774	intron	Glut1 +	chr3L	940347	intron	Glut1 +	chr3L	940920	intron	Glut1 +	chr3L_4_940001	chr3L_940001	RAL-386
242	chr3L	1219596	1219625	chr3L	1227329	1227331	412	14	7730	1.5	4.5	3.0	3.5	7735	chr3L	1219596	intron	mwh +	chr3L	1223464	intron	mwh +	chr3L	1227331	intron	mwh +	chr3L_14_1220001	chr3L_1220001	RAL-386
256	chr3L	3601296	3601324	chr3L	3606607	3606633	copia	5	5309	1.5	0.0	0.8	2.8	5337	chr3L	3601296	intron	Eip63E +	chr3L	3603964	intron	Eip63E +	chr3L	3606633	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-386
264	chr3L	5034158	5034191	chr3L	5043310	5043343	roo	5	9149	1.0	0.0	0.5	3.3	9185	chr3L	5034158	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043343	intron	Con -	chr3L_5_5035001	chr3L_5035001	RAL-386
266	chr3L	6040378	6040389	chr3L	6042733	6042745	Doc	4	2354	0.5	1.5	1.0	2.0	2367	chr3L	6040378	intergenic	Jon65Aiv +	chr3L	6041562	intergenic	not near genes	chr3L	6042745	intergenic	not near genes	chr3L_4_6040001	chr3L_6040001	RAL-386
275	chr3L	7377325	7377345	chr3L	7380422	7380450	297	5	3101	0.0	1.5	0.8	2.8	3125	chr3L	7377325	intron	SMSr -	chr3L	7378888	intron	SMSr -	chr3L	7380450	intron	SMSr -	chr3L_5_7375001	chr3L_7375001	RAL-386
280	chr3L	8481784	8481804	chr3L	8490943	8490953	roo	6	9156	2.5	5.5	4.0	1.2	9169	chr3L	8481784	intron	CG43163 -	chr3L	8486368	intron	CG43163 -	chr3L	8490953	intron	CG43163 -	chr3L_6_8485001	chr3L_8485001	RAL-386
283	chr3L	8791272	8791294	chr3L	8796691	8796714	I-element	6	5419	3.5	2.0	2.8	1.6	5442	chr3L	8791272	exon	Fhos +	chr3L	8793993	intron	Fhos +	chr3L	8796714	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-386
285	chr3L	9443509	9443533	chr3L	9445300	9445324	S-element	4	1789	0.5	2.5	1.5	1.6	1815	chr3L	9443509	intron	CG33926 +	chr3L	9444416	intron	CG33926 +	chr3L	9445324	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-386
286	chr3L	9575910	9575941	chr3L	9580988	9581000	jockey	4	5073	0.0	1.0	0.5	2.7	5090	chr3L	9575910	intron	CG42673 +	chr3L	9578455	intron	CG42673 +	chr3L	9581000	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-386
292	chr3L	11723091	11723113	chr3L	11727885	11727908	Doc	5	4794	2.0	1.0	1.5	2.0	4817	chr3L	11723091	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727908	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	RAL-386
293	chr3L	11864554	11864570	chr3L	11865848	11865865	pogo	5	1295	2.5	2.0	2.2	1.6	1311	chr3L	11864554	intron	CG44837 -	chr3L	11865210	intron	CG44837 -	chr3L	11865865	intron	CG44837 -	chr3L_5_11865001	chr3L_11865001	RAL-386
302	chr3L	14468454	14468478	chr3L	14473659	14473681	copia	4	5204	0.0	0.0	0.0	4.0	5227	chr3L	14468454	intron	bbg -	chr3L	14471068	intron	bbg -	chr3L	14473681	intron	bbg -	chr3L_4_14470001	chr3L_14470001	RAL-386
305	chr3L	15899237	15899261	chr3L	15899788	15899788	jockey	7	552	2.0	3.5	2.8	1.8	551	chr3L	15899237	intergenic	pHCl -	chr3L	15899512	intergenic	pHCl -	chr3L	15899788	intergenic	sff -	chr3L_7_15895001	chr3L_15895001	RAL-386
310	chr3L	16945729	16945760	chr3L	16954880	16954895	roo	7	9146	2.0	1.5	1.8	2.5	9166	chr3L	16945729	exon	Obp73a +	chr3L	16950312	intergenic	not near genes	chr3L	16954895	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	RAL-386
317	chr3L	18772408	18772441	chr3L	18781089	18781121	roo	8	8681	0.5	2.0	1.2	3.6	8713	chr3L	18772408	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_8_18775001	chr3L_18775001	RAL-386
318	chr3L	19008852	19008870	chr3L	19009186	19009207	jockey	4	336	0.5	2.0	1.2	1.8	355	chr3L	19008852	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009207	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-386
319	chr3L	19117041	19117074	chr3L	19124487	19124520	mdg1	7	7443	2.0	1.5	1.8	2.5	7479	chr3L	19117041	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124520	intron	CG14082 -	chr3L_7_19120001	chr3L_19120001	RAL-386
326	chr3L	20257338	20257358	chr3L	20258458	20258478	pogo	6	1119	1.0	1.5	1.2	2.7	1140	chr3L	20257338	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-386
329	chr3L	21306151	21306175	chr3L	21315310	21315332	roo	5	9158	0.5	1.5	1.0	2.5	9181	chr3L	21306151	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310742	intron	Pc -	chr3L	21315332	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-386
330	chr3L	21498848	21498862	chr3L	21500484	21500495	1360	5	1632	5.5	5.5	5.5	0.8	1647	chr3L	21498848	intron	Glg1 -	chr3L	21499672	intron	Glg1 -	chr3L	21500495	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-386
334	chr3L	22099677	22099694	chr3L	22105863	22105880	3S18	4	6186	4.0	0.5	2.2	1.2	6203	chr3L	22099677	intergenic	not near genes	chr3L	22102778	intergenic	not near genes	chr3L	22105880	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-386
340	chr3L	22617190	22617219	chr3L	22624642	22624668	blood	4	7444	1.5	0.5	1.0	2.0	7478	chr3L	22617190	intron	CG14459 -	chr3L	22620929	intron	CG14459 -	chr3L	22624668	intron	CG14459 -	chr3L_4_22620001	chr3L_22620001	RAL-386
344	chr3R	4206076	4206102	chr3R	4211649	4211673	mdg3	4	5573	2.0	0.0	1.0	2.0	5597	chr3R	4206076	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211673	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-386
345	chr3R	4408413	4408436	chr3R	4412717	4412740	Juan	5	4304	1.5	2.0	1.8	1.8	4327	chr3R	4408413	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412740	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	RAL-386
346	chr3R	4753249	4753256	chr3R	4757550	4757559	F-element	4	4302	7.5	4.0	5.8	0.6	4310	chr3R	4753249	intron,intron	atms +,CG44098 -	chr3R	4755404	intron,intron	atms +,CG44098 -	chr3R	4757559	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-386
352	chr3R	5747016	5747042	chr3R	5753204	5753227	diver	5	6189	0.5	0.5	0.5	3.3	6211	chr3R	5747016	intergenic	Madm +	chr3R	5750122	intergenic	not near genes	chr3R	5753227	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	RAL-386
353	chr3R	5822391	5822400	chr3R	5823558	5823563	1360	4	1166	2.5	4.0	3.2	1.0	1172	chr3R	5822391	3` UTR	CG2023 -	chr3R	5822977	3` UTR	CG2023 -	chr3R	5823563	3` UTR	CG2023 -	chr3R_4_5820001	chr3R_5820001	RAL-386
354	chr3R	6015981	6015995	chr3R	6024443	6024476	Tirant	4	8472	0.0	4.0	2.0	1.3	8495	chr3R	6015981	intergenic	not near genes	chr3R	6020228	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_4_6020001	chr3R_6020001	RAL-386
355	chr3R	6158517	6158537	chr3R	6167099	6167120	Tirant	6	8581	1.0	4.0	2.5	1.7	8603	chr3R	6158517	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167120	intergenic	CG1077 +	chr3R_6_6160001	chr3R_6160001	RAL-386
356	chr3R	6175172	6175204	chr3R	6182444	6182463	HMS-Beagle2	6	7270	1.0	0.0	0.5	4.0	7291	chr3R	6175172	intergenic	Osi1 +	chr3R	6178818	intron	CR45194 +	chr3R	6182463	intergenic	CR45194 +	chr3R_6_6175001	chr3R_6175001	RAL-386
358	chr3R	6737499	6737527	chr3R	6739285	6739314	Doc	5	1784	3.5	1.0	2.2	1.6	1815	chr3R	6737499	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739314	intron	pb -	chr3R_5_6735001	chr3R_6735001	RAL-386
367	chr3R	8403011	8403040	chr3R	8412177	8412206	roo	5	9163	3.0	2.5	2.8	1.3	9195	chr3R	8403011	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412206	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-386
401	chr3R	15132071	15132082	chr3R	15135130	15135142	Juan	4	3059	3.0	2.5	2.8	1.1	3071	chr3R	15132071	intergenic	CG42788 -	chr3R	15133606	intergenic	not near genes	chr3R	15135142	3` UTR	CG6912 -	chr3R_4_15130001	chr3R_15130001	RAL-386
405	chr3R	16756318	16756352	chr3R	16762509	16762541	diver	6	6189	0.0	0.0	0.0	6.0	6223	chr3R	16756318	intron	bxd -	chr3R	16759430	intron	bxd -	chr3R	16762541	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-386
417	chr3R	19193004	19193014	chr3R	19197298	19197318	F-element	5	4302	0.0	2.5	1.2	2.3	4314	chr3R	19193004	intron	CG31475 +	chr3R	19195161	intron	CG31475 +	chr3R	19197318	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-386
422	chr3R	20266519	20266533	chr3R	20272989	20273004	Burdock	4	6470	1.0	1.5	1.2	1.8	6485	chr3R	20266519	intron	cic +	chr3R	20269762	intron	cic +	chr3R	20273004	intron	cic +	chr3R_4_20265001	chr3R_20265001	RAL-386
445	chr3R	23684697	23684723	chr3R	23685183	23685197	roo	6	476	2.0	6.0	4.0	1.2	500	chr3R	23684697	exon	CG18754 +	chr3R	23684947	intron	CG18754 +	chr3R	23685197	exon	CG18754 +	chr3R_6_23680001	chr3R_23680001	RAL-386
449	chr3R	24072097	24072108	chr3R	24072522	24072522	jockey	4	428	4.5	2.0	3.2	1.0	425	chr3R	24072097	intron	4EHP -	chr3R	24072310	intron	4EHP -	chr3R	24072522	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-386
450	chr3R	24076931	24076944	chr3R	24078381	24078411	hobo	4	1462	1.5	0.5	1.0	2.0	1480	chr3R	24076931	intron	4EHP -	chr3R	24077671	intron	4EHP -	chr3R	24078411	intron	4EHP -	chr3R_4_24075001	chr3R_24075001	RAL-386
455	chr3R	24730109	24730119	chr3R	24732483	24732493	Doc	4	2376	2.5	0.5	1.5	1.6	2384	chr3R	24730109	intron	tok +	chr3R	24731301	intron	tok +	chr3R	24732493	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-386
458	chr3R	25832694	25832719	chr3R	25841875	25841887	roo	4	9177	2.5	3.5	3.0	1.0	9193	chr3R	25832694	exon	alpha4GT2 +	chr3R	25837290	intron	alpha4GT2 +	chr3R	25841887	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-386
461	chr3R	26376322	26376343	chr3R	26385482	26385501	roo	7	9159	2.0	0.0	1.0	3.5	9179	chr3R	26376322	intergenic	not near genes	chr3R	26380912	intergenic	not near genes	chr3R	26385501	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-386
464	chr3R	26642733	26642761	chr3R	26643126	26643154	jockey	4	392	4.0	0.5	2.2	1.2	421	chr3R	26642733	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_4_26640001	chr3R_26640001	RAL-386
467	chr3R	27140520	27140537	chr3R	27148129	27148147	412	4	7607	2.0	1.5	1.8	1.4	7627	chr3R	27140520	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148147	intron	CG6051 -	chr3R_4_27140001	chr3R_27140001	RAL-386
477	chr3R	28068508	28068527	chr3R	28073933	28073967	I-element	4	5432	0.5	2.5	1.5	1.6	5459	chr3R	28068508	intron	CG34362 +	chr3R	28071238	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-386
491	chr3R	29406629	29406646	chr3R	29407896	29407932	jockey	4	1276	1.0	1.5	1.2	1.8	1303	chr3R	29406629	intron	Ptp99A +	chr3R	29407280	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_4_29405001	chr3R_29405001	RAL-386
501	chr3R	29738271	29738300	chr3R	29739738	29739767	hobo	7	1466	2.0	1.5	1.8	2.5	1496	chr3R	29738271	intergenic	CG1969 +,CG7598 +	chr3R	29739019	intron	CG1969 +	chr3R	29739767	5` UTR	CG1969 +	chr3R_7_29735001	chr3R_29735001	RAL-386
503	chr3R	29882023	29882053	chr3R	29891180	29891209	roo	4	9156	1.0	1.0	1.0	2.0	9186	chr3R	29882023	intron	CG31038 +	chr3R	29886616	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-386
507	chr3R	30396215	30396240	chr3R	30404481	30404504	roo	4	8263	3.0	3.0	3.0	1.0	8289	chr3R	30396215	intergenic	not near genes	chr3R	30400360	intergenic	not near genes	chr3R	30404504	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-386
509	chr3R	30818827	30818833	chr3R	30820374	30820379	1360	4	1551	1.5	1.0	1.2	1.8	1552	chr3R	30818827	intron	cindr +	chr3R	30819603	intron	cindr +	chr3R	30820379	intron	cindr +	chr3R_4_30815001	chr3R_30815001	RAL-386
516	chr3R	31691533	31691564	chr3R	31696298	31696328	Doc	9	4758	2.0	2.5	2.2	2.8	4795	chr3R	31691533	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696328	intergenic	not near genes	chr3R_9_31690001	chr3R_31690001	RAL-386
521	chrX	551426	551444	chrX	558986	558990	412	4	7557	2.0	1.5	1.8	1.4	7564	chrX	551426	intron	Appl +	chrX	555208	intron	Appl +	chrX	558990	intron	Appl +	chrX_4_555001	chrX_555001	RAL-386
527	chrX	1627980	1627989	chrX	1635448	1635455	gtwin	4	7468	1.0	6.0	3.5	0.9	7475	chrX	1627980	intron,intron	Mur2B -,br +	chrX	1631718	intron,intron	Mur2B -,br +	chrX	1635455	intron,intron	Mur2B -,br +	chrX_4_1630001	chrX_1630001	RAL-386
532	chrX	2399836	2399861	chrX	2408188	2408201	roo	7	8343	4.5	0.0	2.2	2.2	8365	chrX	2399836	intergenic	not near genes	chrX	2404018	intergenic	not near genes	chrX	2408201	intergenic	not near genes	chrX_7_2400001	chrX_2400001	RAL-386
534	chrX	3493093	3493111	chrX	3502252	3502270	roo	4	9159	2.0	2.0	2.0	1.3	9177	chrX	3493093	intron,intron	CR44999 +,Gas8 -	chrX	3497682	intron,intron	CR44999 +,Gas8 -	chrX	3502270	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-386
535	chrX	3986865	3986889	chrX	3994496	3994520	412	5	7631	2.0	1.5	1.8	1.8	7655	chrX	3986865	intergenic	not near genes	chrX	3990692	intergenic	not near genes	chrX	3994520	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-386
536	chrX	4157903	4157919	chrX	4164956	4164972	297	4	7049	2.5	2.5	2.5	1.1	7069	chrX	4157903	intron	Fas2 -	chrX	4161438	intron	Fas2 -	chrX	4164972	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-386
543	chrX	6392878	6392892	chrX	6397628	6397654	Doc	5	4759	1.0	2.0	1.5	2.0	4776	chrX	6392878	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397654	intergenic	not near genes	chrX_5_6395001	chrX_6395001	RAL-386
544	chrX	6562817	6562851	chrX	6571299	6571304	Tirant	11	8476	2.5	5.0	3.8	2.3	8487	chrX	6562817	intron	CG34417 +	chrX	6567060	intron	CG34417 +	chrX	6571304	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-386
546	chrX	7125246	7125274	chrX	7134403	7134433	roo	5	9156	0.5	0.0	0.2	4.2	9187	chrX	7125246	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134433	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-386
548	chrX	7845726	7845751	chrX	7847217	7847237	hopper2	4	1486	3.0	1.0	2.0	1.3	1511	chrX	7845726	intergenic	not near genes	chrX	7846482	intergenic	not near genes	chrX	7847237	intergenic	not near genes	chrX_4_7845001	chrX_7845001	RAL-386
549	chrX	9508149	9508167	chrX	9509661	9509685	jockey	8	1513	0.5	3.0	1.8	2.9	1536	chrX	9508149	intron	CG32700 -	chrX	9508917	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-386
556	chrX	10772687	10772697	chrX	10772763	10772780	Tirant	5	80	2.5	2.0	2.2	1.6	93	chrX	10772687	intron	CG15211 +	chrX	10772734	intron	CG15211 +	chrX	10772780	intron	CG15211 +	chrX_5_10770001	chrX_10770001	RAL-386
559	chrX	13429480	13429493	chrX	13430628	13430641	jockey	4	1148	0.0	1.5	0.8	2.2	1161	chrX	13429480	intergenic	not near genes	chrX	13430060	intergenic	not near genes	chrX	13430641	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-386
561	chrX	13937984	13938006	chrX	13941255	13941277	I-element	4	3270	2.0	0.5	1.2	1.8	3293	chrX	13937984	intron	mamo -	chrX	13939630	intron	mamo -	chrX	13941277	intron	mamo -	chrX_4_13935001	chrX_13935001	RAL-386
565	chrX	14416307	14416332	chrX	14421073	14421099	F-element	4	4766	0.5	0.0	0.2	3.3	4792	chrX	14416307	intron	dpr8 +	chrX	14418703	intron	dpr8 +	chrX	14421099	intron	dpr8 +	chrX_4_14415001	chrX_14415001	RAL-386
573	chrX	16492650	16492666	chrX	16498224	16498243	mdg3	4	5576	1.0	0.5	0.8	2.2	5593	chrX	16492650	intron	para -	chrX	16495446	intron	para -	chrX	16498243	intron	para -	chrX_4_16495001	chrX_16495001	RAL-386
574	chrX	17556944	17556976	chrX	17557442	17557444	mdg1	5	492	2.0	3.5	2.8	1.3	500	chrX	17556944	intron	CG43658 -	chrX	17557194	intron	CG43658 -	chrX	17557444	intron	CG43658 -	chrX_5_17555001	chrX_17555001	RAL-386
577	chrX	18429507	18429527	chrX	18434803	18434838	Transpac	4	5306	1.5	1.5	1.5	1.6	5331	chrX	18429507	intergenic	not near genes	chrX	18432172	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_4_18430001	chrX_18430001	RAL-386
590	chrX	22996328	22996340	chrX	23003562	23003570	roo	4	7232	0.0	0.5	0.2	3.3	7242	chrX	22996328	intron,intron	stnA -,stnB -	chrX	22999949	intron,intron	stnA -,stnB -	chrX	23003570	intron,intron	stnA -,stnB -	chrX_4_22995001	chrX_22995001	RAL-386