SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 325892 325925 chr2L 325969 326002 4 75 1.5 2.0 1.8 1.4 110 chr2L 325892 intron,exon Plc21C +,CG43755 - chr2L 325947 intron,exon Plc21C +,CG43755 - chr2L 326002 intron,exon Plc21C +,CG43755 - chr2L_4_325001 chr2L_325001 RAL-386 2 chr2L 576861 576867 chr2L 576965 576974 4 106 5.0 3.0 4.0 0.8 113 chr2L 576861 5` UTR Ptth - chr2L 576918 intergenic Ptth - chr2L 576974 intergenic Ptth - chr2L_4_575001 chr2L_575001 RAL-386 3 chr2L 848616 848642 chr2L 848700 848722 15 82 3.5 5.0 4.2 2.9 106 chr2L 848616 intron drongo - chr2L 848669 intron drongo - chr2L 848722 intron drongo - chr2L_15_845001 chr2L_845001 RAL-386 4 chr2L 906553 906574 chr2L 906634 906656 6 81 0.0 3.5 1.8 2.1 103 chr2L 906553 intergenic not near genes chr2L 906604 intergenic not near genes chr2L 906656 intergenic not near genes chr2L_6_905001 chr2L_905001 RAL-386 5 chr2L 935308 935333 chr2L 935381 935395 7 72 0.0 0.5 0.2 5.8 87 chr2L 935308 intron CG4341 + chr2L 935352 intron CG4341 + chr2L 935395 intron CG4341 + chr2L_7_935001 chr2L_935001 RAL-386 6 chr2L 935954 935964 chr2L 936033 936041 5 79 3.0 2.5 2.8 1.3 87 chr2L 935954 intron CG4341 + chr2L 935998 intron CG4341 + chr2L 936041 intron CG4341 + chr2L_5_935001 chr2L_935001 RAL-386 7 chr2L 1065530 1065551 chr2L 1065622 1065639 5 90 3.5 2.5 3.0 1.2 109 chr2L 1065530 intron S - chr2L 1065584 intron S - chr2L 1065639 intron S - chr2L_5_1065001 chr2L_1065001 RAL-386 8 chr2L 1192682 1192697 chr2L 1192784 1192796 8 101 4.0 2.5 3.2 1.9 114 chr2L 1192682 intron CG5001 + chr2L 1192739 intron CG5001 + chr2L 1192796 intron CG5001 + chr2L_8_1190001 chr2L_1190001 RAL-386 9 chr2L 1300743 1300765 chr2L 1300832 1300855 4 90 0.5 0.5 0.5 2.7 112 chr2L 1300743 intergenic not near genes chr2L 1300799 intergenic not near genes chr2L 1300855 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-386 10 chr2L 1393989 1394021 chr2L 1394066 1394098 9 75 2.0 1.5 1.8 3.2 109 chr2L 1393989 intron lea - chr2L 1394044 intron lea - chr2L 1394098 intron lea - chr2L_9_1390001 chr2L_1390001 RAL-386 11 chr2L 1446598 1446620 chr2L 1446772 1446793 6 174 0.0 1.0 0.5 4.0 195 chr2L 1446598 intergenic not near genes chr2L 1446696 intergenic not near genes chr2L 1446793 intergenic not near genes chr2L_6_1445001 chr2L_1445001 RAL-386 12 chr2L 1570684 1570711 chr2L 1573556 1573583 F-element 6 2872 3.5 1.0 2.2 1.9 2899 chr2L 1570684 intron haf + chr2L 1572134 intron haf + chr2L 1573583 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-386 13 chr2L 1615386 1615412 chr2L 1615468 1615493 5 82 0.5 0.5 0.5 3.3 107 chr2L 1615386 intergenic not near genes chr2L 1615440 intergenic not near genes chr2L 1615493 intergenic not near genes chr2L_5_1615001 chr2L_1615001 RAL-386 14 chr2L 1678984 1678996 chr2L 1686447 1686461 blood 4 7463 0.5 1.5 1.0 2.0 7477 chr2L 1678984 intron chinmo + chr2L 1682722 intron chinmo + chr2L 1686461 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-386 15 chr2L 1711366 1711388 chr2L 1711681 1711681 mdg3 4 314 2.5 4.5 3.5 0.9 315 chr2L 1711366 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711681 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-386 16 chr2L 1742563 1742577 chr2L 1743058 1743059 4 492 7.0 1.5 4.2 0.8 496 chr2L 1742563 intron CG17646 + chr2L 1742811 intron CG17646 + chr2L 1743059 intron CG17646 + chr2L_4_1740001 chr2L_1740001 RAL-386 17 chr2L 1901510 1901528 chr2L 1901586 1901604 4 74 1.0 2.0 1.5 1.6 94 chr2L 1901510 intron CG7337 + chr2L 1901557 intron CG7337 + chr2L 1901604 intron CG7337 + chr2L_4_1900001 chr2L_1900001 RAL-386 18 chr2L 2046330 2046350 chr2L 2046405 2046412 5 73 1.0 1.5 1.2 2.3 82 chr2L 2046330 intron Kebab + chr2L 2046371 intron Kebab + chr2L 2046412 intron Kebab + chr2L_5_2045001 chr2L_2045001 RAL-386 19 chr2L 2207675 2207695 chr2L 2207753 2207775 4 78 3.5 3.0 3.2 1.0 100 chr2L 2207675 exon CG33124 - chr2L 2207725 exon CG33124 - chr2L 2207775 exon CG33124 - chr2L_4_2205001 chr2L_2205001 RAL-386 20 chr2L 2311078 2311091 chr2L 2311173 2311186 4 95 0.5 0.0 0.2 3.3 108 chr2L 2311078 intron CG9967 - chr2L 2311132 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-386 21 chr2L 2427377 2427396 chr2L 2427463 2427482 5 85 4.0 2.5 3.2 1.2 105 chr2L 2427377 3` UTR CR44912 - chr2L 2427430 3` UTR CR44912 - chr2L 2427482 3` UTR CR44912 - chr2L_5_2425001 chr2L_2425001 RAL-386 22 chr2L 2552736 2552775 chr2L 2552816 2552854 8 79 2.0 2.0 2.0 2.7 118 chr2L 2552736 exon CG3515 - chr2L 2552795 5` UTR CG3515 - chr2L 2552854 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-386 23 chr2L 2678659 2678679 chr2L 2678741 2678762 5 83 0.5 3.0 1.8 1.8 103 chr2L 2678659 intron CG31690 + chr2L 2678710 intron CG31690 + chr2L 2678762 intron CG31690 + chr2L_5_2675001 chr2L_2675001 RAL-386 24 chr2L 2804021 2804028 chr2L 2804097 2804105 4 76 0.0 1.5 0.8 2.2 84 chr2L 2804021 intergenic not near genes chr2L 2804063 intergenic not near genes chr2L 2804105 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-386 25 chr2L 3001612 3001634 chr2L 3001684 3001714 8 75 1.5 4.0 2.8 2.1 102 chr2L 3001612 intron CG17265 + chr2L 3001663 intron CG17265 + chr2L 3001714 intron CG17265 + chr2L_8_3000001 chr2L_3000001 RAL-386 26 chr2L 3016136 3016167 chr2L 3016214 3016244 7 77 0.5 2.5 1.5 2.8 108 chr2L 3016136 intergenic CG17265 +,CG17224 - chr2L 3016190 intergenic CG17265 +,CG17224 - chr2L 3016244 intergenic CG17265 +,CG17224 - chr2L_7_3015001 chr2L_3015001 RAL-386 27 chr2L 3049248 3049258 chr2L 3049334 3049344 4 86 1.0 2.5 1.8 1.4 96 chr2L 3049248 intron v(2)k05816 + chr2L 3049296 intron v(2)k05816 + chr2L 3049344 intron v(2)k05816 + chr2L_4_3045001 chr2L_3045001 RAL-386 28 chr2L 3192221 3192242 chr2L 3192332 3192352 5 110 1.0 5.5 3.2 1.2 131 chr2L 3192221 intron CG34393 - chr2L 3192286 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-386 29 chr2L 3291250 3291270 chr2L 3291329 3291348 4 78 1.0 2.5 1.8 1.4 98 chr2L 3291250 3` UTR CG9664 - chr2L 3291299 3` UTR CG9664 - chr2L 3291348 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-386 30 chr2L 3367012 3367040 chr2L 3367162 3367190 6 150 2.0 3.0 2.5 1.7 178 chr2L 3367012 intron CG34394 - chr2L 3367101 intron CG34394 - chr2L 3367190 intron CG34394 - chr2L_6_3365001 chr2L_3365001 RAL-386 31 chr2L 3498720 3498748 chr2L 3498797 3498825 5 77 1.0 0.5 0.8 2.8 105 chr2L 3498720 intron tim - chr2L 3498772 intron tim - chr2L 3498825 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-386 32 chr2L 3592077 3592104 chr2L 3592149 3592183 7 78 2.5 4.0 3.2 1.7 106 chr2L 3592077 intergenic not near genes chr2L 3592130 intergenic not near genes chr2L 3592183 intergenic not near genes chr2L_7_3590001 chr2L_3590001 RAL-386 33 chr2L 4141637 4141641 chr2L 4147658 4147662 4 6020 7.5 5.5 6.5 0.5 6025 chr2L 4141637 intergenic not near genes chr2L 4144650 intergenic not near genes chr2L 4147662 intergenic not near genes chr2L_4_4140001 chr2L_4140001 RAL-386 34 chr2L 4293927 4293940 chr2L 4294003 4294003 4 80 2.0 1.5 1.8 1.4 76 chr2L 4293927 intron tutl + chr2L 4293965 intron tutl + chr2L 4294003 intron tutl + chr2L_4_4290001 chr2L_4290001 RAL-386 35 chr2L 4351483 4351501 chr2L 4351549 4351577 7 72 3.0 4.5 3.8 1.5 94 chr2L 4351483 intergenic CR44700 + chr2L 4351530 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_7_4350001 chr2L_4350001 RAL-386 36 chr2L 4841079 4841104 chr2L 4841149 4841180 6 74 1.5 1.5 1.5 2.4 101 chr2L 4841079 intron CG12194 + chr2L 4841130 intron CG12194 + chr2L 4841180 exon CG12194 + chr2L_6_4840001 chr2L_4840001 RAL-386 37 chr2L 5057574 5057600 chr2L 5057916 5057941 7 341 0.0 0.5 0.2 5.8 367 chr2L 5057574 exon CG31918 - chr2L 5057758 exon CG31918 - chr2L 5057941 exon CG31918 - chr2L_7_5055001 chr2L_5055001 RAL-386 38 chr2L 5088526 5088530 chr2L 5088606 5088609 4 79 3.0 0.5 1.8 1.4 83 chr2L 5088526 intron pgant5 - chr2L 5088568 intron pgant5 - chr2L 5088609 intron pgant5 - chr2L_4_5085001 chr2L_5085001 RAL-386 39 chr2L 5237914 5237940 chr2L 5238000 5238029 5 83 1.5 2.0 1.8 1.8 115 chr2L 5237914 intron tkv - chr2L 5237972 intron tkv - chr2L 5238029 intron tkv - chr2L_5_5235001 chr2L_5235001 RAL-386 40 chr2L 5500072 5500081 chr2L 5500158 5500160 4 83 0.0 2.0 1.0 2.0 88 chr2L 5500072 intergenic not near genes chr2L 5500116 intergenic not near genes chr2L 5500160 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-386 41 chr2L 5587616 5587622 chr2L 5587666 5587698 7 61 4.5 6.0 5.2 1.1 82 chr2L 5587616 exon CG7251 - chr2L 5587657 exon CG7251 - chr2L 5587698 exon CG7251 - chr2L_7_5585001 chr2L_5585001 RAL-386 42 chr2L 5624557 5624581 chr2L 5624791 5624803 4 232 0.0 1.5 0.8 2.2 246 chr2L 5624557 intergenic not near genes chr2L 5624680 intergenic not near genes chr2L 5624803 intergenic not near genes chr2L_4_5620001 chr2L_5620001 RAL-386 43 chr2L 5843844 5843867 chr2L 5843931 5843952 4 86 0.0 0.5 0.2 3.3 108 chr2L 5843844 intron TrissinR + chr2L 5843898 intron TrissinR + chr2L 5843952 intron TrissinR + chr2L_4_5840001 chr2L_5840001 RAL-386 44 chr2L 5870732 5870752 chr2L 5870816 5870834 6 82 0.5 2.5 1.5 2.4 102 chr2L 5870732 intron rau - chr2L 5870783 intron rau - chr2L 5870834 intron rau - chr2L_6_5870001 chr2L_5870001 RAL-386 45 chr2L 5897597 5897617 chr2L 5897680 5897700 7 80 6.5 3.0 4.8 1.2 103 chr2L 5897597 intergenic not near genes chr2L 5897648 intergenic not near genes chr2L 5897700 intergenic not near genes chr2L_7_5895001 chr2L_5895001 RAL-386 46 chr2L 5976914 5976928 chr2L 5977026 5977040 5 112 0.5 1.5 1.0 2.5 126 chr2L 5976914 intron chic - chr2L 5976977 intron chic - chr2L 5977040 intron chic - chr2L_5_5975001 chr2L_5975001 RAL-386 47 chr2L 5989036 5989062 chr2L 5989112 5989138 6 75 2.5 0.0 1.2 2.7 102 chr2L 5989036 intergenic ifc +,lid - chr2L 5989087 intergenic ifc +,lid - chr2L 5989138 intergenic lid -,ifc + chr2L_6_5985001 chr2L_5985001 RAL-386 48 chr2L 6103227 6103245 chr2L 6103297 6103321 5 73 1.0 1.0 1.0 2.5 94 chr2L 6103227 intron stai + chr2L 6103274 intron stai + chr2L 6103321 intron stai + chr2L_5_6100001 chr2L_6100001 RAL-386 49 chr2L 6426866 6426887 chr2L 6445120 6445146 roo 4 18258 1.0 1.5 1.2 1.8 18280 chr2L 6426866 3` UTR CG9527 - chr2L 6436006 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_4_6435001 chr2L_6435001 RAL-386 50 chr2L 6483803 6483980 chr2L 6483891 6484147 6 154 1.0 6.0 3.5 1.3 344 chr2L 6483803 exon DLP + chr2L 6483975 exon DLP + chr2L 6484147 exon DLP + chr2L_6_6480001 chr2L_6480001 RAL-386 51 chr2L 6514148 6514162 chr2L 6514203 6514220 5 63 2.5 2.5 2.5 1.4 72 chr2L 6514148 intron CG31637 + chr2L 6514184 intron CG31637 + chr2L 6514220 intron CG31637 + chr2L_5_6510001 chr2L_6510001 RAL-386 52 chr2L 6658072 6658098 chr2L 6658176 6658199 8 104 1.5 3.0 2.2 2.5 127 chr2L 6658072 5` UTR CG31636 - chr2L 6658136 5` UTR CG31636 - chr2L 6658199 intergenic CG31636 -,CG11070 + chr2L_8_6655001 chr2L_6655001 RAL-386 53 chr2L 6740743 6740756 chr2L 6740830 6740843 4 87 0.0 4.5 2.2 1.2 100 chr2L 6740743 intergenic not near genes chr2L 6740793 intergenic not near genes chr2L 6740843 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-386 54 chr2L 7343324 7343357 chr2L 7350439 7350471 roo 5 7115 2.0 0.5 1.2 2.3 7147 chr2L 7343324 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-386 55 chr2L 7922761 7922770 chr2L 7922841 7922849 4 80 1.0 2.0 1.5 1.6 88 chr2L 7922761 intron Snoo - chr2L 7922805 intron Snoo - chr2L 7922849 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-386 56 chr2L 8521754 8521782 chr2L 8521837 8521866 4 84 0.0 1.0 0.5 2.7 112 chr2L 8521754 3` UTR CG13091 + chr2L 8521810 intergenic CG13091 +,Acer + chr2L 8521866 intergenic CG13091 +,Acer + chr2L_4_8520001 chr2L_8520001 RAL-386 57 chr2L 9251146 9251174 chr2L 9251242 9251269 9 93 1.5 2.5 2.0 3.0 123 chr2L 9251146 intergenic aust -,borr - chr2L 9251208 intergenic aust -,borr - chr2L 9251269 intergenic borr -,aust - chr2L_9_9250001 chr2L_9250001 RAL-386 58 chr2L 9565852 9565870 chr2L 9565938 9565955 8 84 3.5 2.5 3.0 2.0 103 chr2L 9565852 intron jp - chr2L 9565904 intron jp - chr2L 9565955 intron jp - chr2L_8_9565001 chr2L_9565001 RAL-386 59 chr2L 9565873 9565882 chr2L 9565932 9565968 5 80 3.5 2.0 2.8 1.3 95 chr2L 9565873 intron jp - chr2L 9565920 intron jp - chr2L 9565968 intron jp - chr2L_5_9565001 chr2L_9565001 RAL-386 60 chr2L 9613844 9613853 chr2L 9614005 9614025 4 169 2.0 1.5 1.8 1.4 181 chr2L 9613844 intron Trx-2 + chr2L 9613934 intron Trx-2 + chr2L 9614025 intron Trx-2 + chr2L_4_9610001 chr2L_9610001 RAL-386 61 chr2L 9756778 9756786 chr2L 9756875 9756894 5 104 2.5 2.5 2.5 1.4 116 chr2L 9756778 intergenic not near genes chr2L 9756836 intergenic not near genes chr2L 9756894 intergenic not near genes chr2L_5_9755001 chr2L_9755001 RAL-386 62 chr2L 9892507 9892535 chr2L 9892582 9892611 6 76 1.5 0.5 1.0 3.0 104 chr2L 9892507 intron mtDNA-helicase - chr2L 9892559 intron mtDNA-helicase - chr2L 9892611 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-386 63 chr2L 10105292 10105315 chr2L 10105364 10105389 7 74 1.5 1.0 1.2 3.2 97 chr2L 10105292 intron,intron CG44153 -,CG34109 + chr2L 10105340 intron,intron CG44153 -,CG34109 + chr2L 10105389 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-386 64 chr2L 10586514 10586537 chr2L 10586592 10586616 7 79 3.5 1.5 2.5 2.0 102 chr2L 10586514 intron Trim9 + chr2L 10586565 intron Trim9 + chr2L 10586616 intron Trim9 + chr2L_7_10585001 chr2L_10585001 RAL-386 65 chr2L 10705463 10705479 chr2L 10705531 10705558 4 77 4.0 4.5 4.2 0.8 95 chr2L 10705463 exon Lip2 - chr2L 10705510 intron Lip2 - chr2L 10705558 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-386 66 chr2L 10862847 10862873 chr2L 10864458 10864474 Rt1c 5 1607 2.0 5.5 3.8 1.0 1627 chr2L 10862847 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864474 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-386 67 chr2L 11082121 11082151 chr2L 11082224 11082255 7 99 3.0 2.5 2.8 1.8 134 chr2L 11082121 intergenic not near genes chr2L 11082188 intergenic not near genes chr2L 11082255 intergenic not near genes chr2L_7_11080001 chr2L_11080001 RAL-386 68 chr2L 11292374 11292408 chr2L 11292456 11292490 6 81 0.5 0.5 0.5 4.0 116 chr2L 11292374 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_6_11290001 chr2L_11290001 RAL-386 69 chr2L 11390737 11390748 chr2L 11390840 11390851 5 103 0.5 0.5 0.5 3.3 114 chr2L 11390737 3` UTR CR43681 - chr2L 11390794 3` UTR CR43681 - chr2L 11390851 3` UTR CR43681 - chr2L_5_11390001 chr2L_11390001 RAL-386 70 chr2L 12408958 12408969 chr2L 12409032 12409060 4 85 1.0 2.0 1.5 1.6 102 chr2L 12408958 intron vir-1 - chr2L 12409009 intron vir-1 - chr2L 12409060 intron vir-1 - chr2L_4_12405001 chr2L_12405001 RAL-386 71 chr2L 12693843 12693873 chr2L 12693920 12693947 8 76 1.5 0.0 0.8 4.4 104 chr2L 12693843 exon CG6153 + chr2L 12693895 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693947 3` UTR CG5780 - chr2L_8_12690001 chr2L_12690001 RAL-386 72 chr2L 13231883 13231912 chr2L 13231994 13232019 5 109 3.5 1.0 2.2 1.6 136 chr2L 13231883 intergenic Prosalpha6T + chr2L 13231951 intergenic Prosalpha6T + chr2L 13232019 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-386 73 chr2L 13294394 13294418 chr2L 13294473 13294500 4 80 1.5 0.5 1.0 2.0 106 chr2L 13294394 intron CG31729 + chr2L 13294447 intron CG31729 + chr2L 13294500 intron CG31729 + chr2L_4_13290001 chr2L_13290001 RAL-386 74 chr2L 13369287 13369320 chr2L 13369382 13369416 16 95 5.0 5.0 5.0 2.7 129 chr2L 13369287 5` UTR CG31855 + chr2L 13369352 5` UTR CG31855 + chr2L 13369416 exon CG31855 + chr2L_16_13365001 chr2L_13365001 RAL-386 75 chr2L 13405658 13405674 chr2L 13410450 13410469 Doc 9 4794 2.0 2.5 2.2 2.8 4811 chr2L 13405658 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410469 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-386 76 chr2L 13803297 13803320 chr2L 13803374 13803385 5 74 3.5 2.0 2.8 1.3 88 chr2L 13803297 intergenic CAH1 + chr2L 13803341 intergenic CAH1 + chr2L 13803385 intergenic CAH1 + chr2L_5_13800001 chr2L_13800001 RAL-386 77 chr2L 13914816 13914840 chr2L 13914896 13914919 4 79 2.0 1.0 1.5 1.6 103 chr2L 13914816 5` UTR Ance-3 + chr2L 13914868 5` UTR Ance-3 + chr2L 13914919 5` UTR Ance-3 + chr2L_4_13910001 chr2L_13910001 RAL-386 78 chr2L 13966099 13966107 chr2L 13966248 13966256 4 148 1.5 1.5 1.5 1.6 157 chr2L 13966099 intron NimB2 - chr2L 13966178 intron NimB2 - chr2L 13966256 intron NimB2 - chr2L_4_13965001 chr2L_13965001 RAL-386 79 chr2L 14158511 14158527 chr2L 14158620 14158636 6 109 1.5 4.5 3.0 1.5 125 chr2L 14158511 exon CG17341 + chr2L 14158574 intron CG17341 + chr2L 14158636 intron CG17341 + chr2L_6_14155001 chr2L_14155001 RAL-386 80 chr2L 14549160 14549178 chr2L 14549233 14549254 5 75 1.0 3.0 2.0 1.7 94 chr2L 14549160 intergenic CG4218 - chr2L 14549207 intergenic CG4218 - chr2L 14549254 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-386 81 chr2L 14601983 14602002 chr2L 14602067 14602083 6 82 1.5 1.0 1.2 2.7 100 chr2L 14601983 exon osp - chr2L 14602033 intron osp - chr2L 14602083 intron osp - chr2L_6_14600001 chr2L_14600001 RAL-386 82 chr2L 14803887 14803912 chr2L 14809084 14809114 copia 4 5200 0.5 0.0 0.2 3.3 5227 chr2L 14803887 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_4_14805001 chr2L_14805001 RAL-386 83 chr2L 15000855 15000886 chr2L 15000983 15001015 5 128 5.0 8.0 6.5 0.7 160 chr2L 15000855 intergenic not near genes chr2L 15000935 intergenic not near genes chr2L 15001015 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-386 84 chr2L 15127767 15127794 chr2L 15127852 15127879 7 83 2.5 1.5 2.0 2.3 112 chr2L 15127767 intergenic not near genes chr2L 15127823 intergenic not near genes chr2L 15127879 intergenic not near genes chr2L_7_15125001 chr2L_15125001 RAL-386 85 chr2L 15446059 15446084 chr2L 15453526 15453553 blood 4 7468 0.5 0.0 0.2 3.3 7494 chr2L 15446059 intergenic not near genes chr2L 15449806 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-386 86 chr2L 15586413 15586427 chr2L 15593465 15593478 297 4 7052 1.0 2.0 1.5 1.6 7065 chr2L 15586413 intergenic not near genes chr2L 15589946 intergenic not near genes chr2L 15593478 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-386 87 chr2L 15860975 15860988 chr2L 15862032 15862047 5 1057 1.0 1.5 1.2 2.3 1072 chr2L 15860975 intergenic not near genes chr2L 15861511 intergenic not near genes chr2L 15862047 intergenic not near genes chr2L_5_15860001 chr2L_15860001 RAL-386 88 chr2L 16071771 16071772 chr2L 16217660 16217660 copia 10 145889 6.5 2.0 4.2 1.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-386 89 chr2L 16098926 16098945 chr2L 16099013 16099033 4 86 0.0 1.0 0.5 2.7 107 chr2L 16098926 intergenic not near genes chr2L 16098980 intergenic not near genes chr2L 16099033 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-386 90 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 6.0 2.0 4.0 1.6 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-386 91 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 12 145889 6.5 2.0 4.2 2.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-386 92 chr2L 16280274 16280286 chr2L 16281422 16281449 1360 4 1159 4.0 2.0 3.0 1.0 1175 chr2L 16280274 intron crp - chr2L 16280862 intron crp - chr2L 16281449 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-386 93 chr2L 16701456 16701477 chr2L 16701533 16701556 4 78 2.0 1.5 1.8 1.4 100 chr2L 16701456 intergenic not near genes chr2L 16701506 intergenic not near genes chr2L 16701556 intergenic not near genes chr2L_4_16700001 chr2L_16700001 RAL-386 94 chr2L 17264749 17264777 chr2L 17264823 17264856 4 78 3.5 0.0 1.8 1.4 107 chr2L 17264749 intergenic not near genes chr2L 17264802 intergenic not near genes chr2L 17264856 intergenic not near genes chr2L_4_17260001 chr2L_17260001 RAL-386 95 chr2L 17543590 17543624 chr2L 17543683 17543691 4 86 0.0 0.5 0.2 3.3 101 chr2L 17543590 intergenic not near genes chr2L 17543640 intergenic not near genes chr2L 17543691 intergenic not near genes chr2L_4_17540001 chr2L_17540001 RAL-386 96 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 1.0 8.0 4.5 1.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-386 97 chr2L 18755929 18755950 chr2L 18756157 18756178 5 227 2.0 2.0 2.0 1.7 249 chr2L 18755929 intergenic not near genes chr2L 18756054 intergenic not near genes chr2L 18756178 intergenic not near genes chr2L_5_18755001 chr2L_18755001 RAL-386 98 chr2L 18812562 18812589 chr2L 18812825 18812852 4 262 0.0 2.0 1.0 2.0 290 chr2L 18812562 intergenic CG17325 +,CG42305 + chr2L 18812707 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-386 99 chr2L 19406227 19406233 chr2L 19406321 19406325 4 93 1.5 0.0 0.8 2.2 98 chr2L 19406227 intron Pax - chr2L 19406276 intron Pax - chr2L 19406325 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-386 100 chr2L 19407719 19407740 chr2L 19407916 19407937 4 196 0.0 2.0 1.0 2.0 218 chr2L 19407719 intron Pax - chr2L 19407828 intron Pax - chr2L 19407937 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-386 101 chr2L 19620092 19620118 chr2L 19621080 19621107 jockey 6 988 2.5 0.0 1.2 2.7 1015 chr2L 19620092 intron Lar + chr2L 19620600 intron Lar + chr2L 19621107 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-386 102 chr2L 19638536 19638568 chr2L 19638623 19638645 7 83 0.5 0.5 0.5 4.7 109 chr2L 19638536 intron Lar + chr2L 19638590 intron Lar + chr2L 19638645 intron Lar + chr2L_7_19635001 chr2L_19635001 RAL-386 103 chr2L 19703542 19703556 chr2L 19712677 19712691 roo 4 9135 3.5 0.5 2.0 1.3 9149 chr2L 19703542 intron Lar + chr2L 19708116 intron Lar + chr2L 19712691 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-386 104 chr2L 19737354 19737383 chr2L 19740823 19740851 1360 4 3462 0.0 0.0 0.0 4.0 3497 chr2L 19737354 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740851 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-386 105 chr2L 19911289 19911311 chr2L 19911377 19911387 7 85 2.0 1.5 1.8 2.5 98 chr2L 19911289 intron,3` UTR sick +,CR43097 - chr2L 19911338 intron,3` UTR sick +,CR43097 - chr2L 19911387 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 RAL-386 106 chr2L 20350317 20350343 chr2L 20350401 20350427 5 84 1.5 0.5 1.0 2.5 110 chr2L 20350317 intergenic RtGEF +,La - chr2L 20350372 intergenic RtGEF +,La - chr2L 20350427 intergenic RtGEF +,La - chr2L_5_20350001 chr2L_20350001 RAL-386 107 chr2L 20498693 20498817 chr2L 20498789 20498910 11 97 1.0 1.0 1.0 5.5 217 chr2L 20498693 intergenic not near genes chr2L 20498802 intergenic not near genes chr2L 20498910 intergenic not near genes chr2L_11_20495001 chr2L_20495001 RAL-386 108 chr2L 20937075 20937101 chr2L 20937230 20937256 8 154 1.0 1.5 1.2 3.6 181 chr2L 20937075 intergenic not near genes chr2L 20937166 intergenic not near genes chr2L 20937256 intergenic not near genes chr2L_8_20935001 chr2L_20935001 RAL-386 109 chr2L 20952025 20952029 chr2L 20952105 20952136 4 100 1.0 0.5 0.8 2.2 111 chr2L 20952025 intergenic not near genes chr2L 20952080 intergenic not near genes chr2L 20952136 intergenic not near genes chr2L_4_20950001 chr2L_20950001 RAL-386 110 chr2L 21020271 21020306 chr2L 21023948 21023982 NOF 4 3676 0.5 0.0 0.2 3.3 3711 chr2L 21020271 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-386 111 chr2L 21199226 21199259 chr2L 21199303 21199336 5 73 1.0 1.5 1.2 2.3 110 chr2L 21199226 intergenic CG31624 -,Ret - chr2L 21199281 3` UTR CG31624 - chr2L 21199336 3` UTR CG31624 - chr2L_5_21195001 chr2L_21195001 RAL-386 112 chr2L 21218976 21219010 chr2L 21219250 21219284 6 274 0.5 1.0 0.8 3.3 308 chr2L 21218976 intron Atg18b - chr2L 21219130 intron Atg18b - chr2L 21219284 intron Atg18b - chr2L_6_21215001 chr2L_21215001 RAL-386 113 chr2R 5008992 5009020 chr2R 5009301 5009329 6 303 1.0 2.0 1.5 2.4 337 chr2R 5008992 intron Ir41a + chr2R 5009160 intron Ir41a + chr2R 5009329 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-386 114 chr2R 5255458 5255484 chr2R 5256735 5256764 4 1278 1.0 7.5 4.2 0.8 1306 chr2R 5255458 intergenic CR41443 + chr2R 5256111 intergenic not near genes chr2R 5256764 intergenic not near genes chr2R_4_5255001 chr2R_5255001 RAL-386 115 chr2R 5491663 5491698 chr2R 5491756 5491779 4 90 0.0 0.0 0.0 4.0 116 chr2R 5491663 intron CG30440 - chr2R 5491721 intron CG30440 - chr2R 5491779 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-386 116 chr2R 5991944 5991966 chr2R 5992027 5992053 4 86 0.0 0.0 0.0 4.0 109 chr2R 5991944 intron Src42A + chr2R 5991998 intron Src42A + chr2R 5992053 intron Src42A + chr2R_4_5990001 chr2R_5990001 RAL-386 117 chr2R 6121252 6121269 chr2R 6121440 6121447 5 186 3.5 1.0 2.2 1.6 195 chr2R 6121252 intron EcR - chr2R 6121350 intron EcR - chr2R 6121447 intron EcR - chr2R_5_6120001 chr2R_6120001 RAL-386 118 chr2R 6794212 6794240 chr2R 6794489 6794517 6 273 3.0 2.5 2.8 1.6 305 chr2R 6794212 intron Epac - chr2R 6794364 intron Epac - chr2R 6794517 intron Epac - chr2R_6_6790001 chr2R_6790001 RAL-386 119 chr2R 6797082 6797110 chr2R 6797173 6797200 7 90 1.5 2.5 2.0 2.3 118 chr2R 6797082 5` UTR Epac - chr2R 6797141 5` UTR Epac - chr2R 6797200 5` UTR Epac - chr2R_7_6795001 chr2R_6795001 RAL-386 120 chr2R 6822410 6822432 chr2R 6822481 6822508 7 71 3.0 3.5 3.2 1.7 98 chr2R 6822410 3` UTR CR44442 - chr2R 6822459 3` UTR CR44442 - chr2R 6822508 3` UTR CR44442 - chr2R_7_6820001 chr2R_6820001 RAL-386 121 chr2R 6831408 6831436 chr2R 6831775 6831802 4 367 0.5 0.5 0.5 2.7 394 chr2R 6831408 intron,exon CG15236 +,CG34215 - chr2R 6831605 intron,exon CG15236 +,CG34215 - chr2R 6831802 intron CG15236 + chr2R_4_6830001 chr2R_6830001 RAL-386 122 chr2R 6865705 6865713 chr2R 6865800 6865808 4 95 2.0 4.0 3.0 1.0 103 chr2R 6865705 intron coro - chr2R 6865756 intron coro - chr2R 6865808 intron coro - chr2R_4_6865001 chr2R_6865001 RAL-386 123 chr2R 7128656 7128670 chr2R 7129545 7129568 4 892 3.0 10.0 6.5 0.5 912 chr2R 7128656 exon Cyp9b1 - chr2R 7129112 exon Cyp9b1 - chr2R 7129568 intron Cyp9b1 - chr2R_4_7125001 chr2R_7125001 RAL-386 124 chr2R 7143633 7143659 chr2R 7143739 7143768 6 108 1.5 0.5 1.0 3.0 135 chr2R 7143633 intergenic not near genes chr2R 7143700 intergenic not near genes chr2R 7143768 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-386 125 chr2R 7156173 7156196 chr2R 7158027 7158050 4 1858 16.5 26.0 21.2 0.2 1877 chr2R 7156173 intron pk + chr2R 7157112 intron,exon pk +,nec - chr2R 7158050 intron,exon pk +,nec - chr2R_4_7155001 chr2R_7155001 RAL-386 126 chr2R 7608408 7608434 chr2R 7613609 7613637 I-element 4 5196 0.0 1.0 0.5 2.7 5229 chr2R 7608408 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-386 127 chr2R 7845318 7845347 chr2R 7845452 7845475 5 132 1.0 0.5 0.8 2.8 157 chr2R 7845318 intron Dgk - chr2R 7845396 intron Dgk - chr2R 7845475 intron Dgk - chr2R_5_7845001 chr2R_7845001 RAL-386 128 chr2R 7869195 7869215 chr2R 7873973 7874000 Doc 5 4784 0.0 2.0 1.0 2.5 4805 chr2R 7869195 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874000 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-386 129 chr2R 7897144 7897152 chr2R 7897222 7897237 6 85 0.0 5.5 2.8 1.6 93 chr2R 7897144 intron CG30377 + chr2R 7897190 intron CG30377 + chr2R 7897237 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-386 130 chr2R 8015647 8015679 chr2R 8017670 8017700 5 2018 0.0 0.5 0.2 4.2 2053 chr2R 8015647 intergenic mir-4981 + chr2R 8016674 intergenic not near genes chr2R 8017700 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-386 131 chr2R 8036260 8036283 chr2R 8036341 8036353 4 78 2.0 2.5 2.2 1.2 93 chr2R 8036260 intron Optix + chr2R 8036306 intron Optix + chr2R 8036353 intron Optix + chr2R_4_8035001 chr2R_8035001 RAL-386 132 chr2R 8067066 8067093 chr2R 8067150 8067177 5 83 0.5 1.5 1.0 2.5 111 chr2R 8067066 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067177 exon CG17977 - chr2R_5_8065001 chr2R_8065001 RAL-386 133 chr2R 8277634 8277657 chr2R 8277729 8277750 10 94 4.5 1.5 3.0 2.5 116 chr2R 8277634 5` UTR CR44280 + chr2R 8277692 5` UTR CR44280 + chr2R 8277750 5` UTR CR44280 + chr2R_10_8275001 chr2R_8275001 RAL-386 134 chr2R 8398216 8398234 chr2R 8402987 8403014 Doc 4 4778 4.0 1.0 2.5 1.1 4798 chr2R 8398216 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403014 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-386 135 chr2R 8452039 8452058 chr2R 8452116 8452138 4 80 1.0 1.5 1.2 1.8 99 chr2R 8452039 intergenic Mal-A1 - chr2R 8452088 intergenic Mal-A1 - chr2R 8452138 intergenic Mal-A1 - chr2R_4_8450001 chr2R_8450001 RAL-386 136 chr2R 8508771 8508794 chr2R 8508841 8508877 4 79 0.5 1.0 0.8 2.2 106 chr2R 8508771 intron mtt - chr2R 8508824 intron mtt - chr2R 8508877 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-386 137 chr2R 8698843 8698867 chr2R 8698929 8698954 5 84 0.5 1.5 1.0 2.5 111 chr2R 8698843 intergenic CG8738 + chr2R 8698898 intergenic CG8738 + chr2R 8698954 intergenic CG8738 + chr2R_5_8695001 chr2R_8695001 RAL-386 138 chr2R 8722768 8722795 chr2R 8723007 8723007 pogo 7 232 1.0 3.5 2.2 2.2 239 chr2R 8722768 intron CG14767 - chr2R 8722888 intron CG14767 - chr2R 8723007 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-386 139 chr2R 8759762 8759774 chr2R 8759841 8759853 4 79 2.0 0.5 1.2 1.8 91 chr2R 8759762 intergenic CG8740 + chr2R 8759808 intergenic CG8740 + chr2R 8759853 intergenic CG8740 + chr2R_4_8755001 chr2R_8755001 RAL-386 140 chr2R 8833426 8833444 chr2R 8833507 8833526 5 81 4.5 0.5 2.5 1.4 100 chr2R 8833426 intron sns + chr2R 8833476 intron sns + chr2R 8833526 intron sns + chr2R_5_8830001 chr2R_8830001 RAL-386 141 chr2R 9151316 9151335 chr2R 9157785 9157805 Burdock 7 6467 2.5 1.0 1.8 2.5 6489 chr2R 9151316 3` UTR CG30345 + chr2R 9154560 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_7_9150001 chr2R_9150001 RAL-386 142 chr2R 9281524 9281542 chr2R 9281600 9281617 4 74 0.0 2.5 1.2 1.8 93 chr2R 9281524 intron Pkn - chr2R 9281570 intron Pkn - chr2R 9281617 intron Pkn - chr2R_4_9280001 chr2R_9280001 RAL-386 143 chr2R 9352253 9352257 chr2R 9361401 9361406 roo 4 9149 3.0 4.5 3.8 0.8 9153 chr2R 9352253 intron CG13954 - chr2R 9356830 intron CG13954 - chr2R 9361406 intron CG13954 - chr2R_4_9355001 chr2R_9355001 RAL-386 144 chr2R 9368130 9368143 chr2R 9368204 9368217 4 72 2.5 2.0 2.2 1.2 87 chr2R 9368130 intron CG13954 - chr2R 9368174 intron CG13954 - chr2R 9368217 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-386 145 chr2R 9425919 9425951 chr2R 9425998 9426030 6 77 2.5 0.0 1.2 2.7 111 chr2R 9425919 3` UTR prel + chr2R 9425974 3` UTR prel + chr2R 9426030 3` UTR prel + chr2R_6_9425001 chr2R_9425001 RAL-386 146 chr2R 9510670 9510698 chr2R 9510786 9510814 4 114 0.0 3.0 1.5 1.6 144 chr2R 9510670 intron brp + chr2R 9510742 intron brp + chr2R 9510814 intron brp + chr2R_4_9510001 chr2R_9510001 RAL-386 147 chr2R 9669146 9669171 chr2R 9669246 9669272 5 100 1.0 1.0 1.0 2.5 126 chr2R 9669146 intron Mmp2 - chr2R 9669209 intron Mmp2 - chr2R 9669272 intron Mmp2 - chr2R_5_9665001 chr2R_9665001 RAL-386 148 chr2R 10005848 10005878 chr2R 10007012 10007042 1360 6 1164 0.5 1.5 1.0 3.0 1194 chr2R 10005848 intron Pka-R2 - chr2R 10006445 intron Pka-R2 - chr2R 10007042 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-386 149 chr2R 10133497 10133527 chr2R 10133574 10133604 4 76 0.0 0.0 0.0 4.0 107 chr2R 10133497 intron gem + chr2R 10133550 intron gem + chr2R 10133604 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-386 150 chr2R 10313315 10313351 chr2R 10313403 10313439 7 87 1.5 0.5 1.0 3.5 124 chr2R 10313315 intergenic not near genes chr2R 10313377 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-386 151 chr2R 10469028 10469051 chr2R 10469154 10469177 10 125 2.0 5.0 3.5 2.2 149 chr2R 10469028 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469177 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-386 152 chr2R 10827335 10827362 chr2R 10827422 10827447 8 84 0.5 1.0 0.8 4.4 112 chr2R 10827335 exon CG12325 + chr2R 10827391 3` UTR CG12325 + chr2R 10827447 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_8_10825001 chr2R_10825001 RAL-386 153 chr2R 11111172 11111179 chr2R 11111245 11111259 5 80 0.5 0.0 0.2 4.2 87 chr2R 11111172 intron luna - chr2R 11111216 intron luna - chr2R 11111259 intron luna - chr2R_5_11110001 chr2R_11110001 RAL-386 154 chr2R 11292973 11292987 chr2R 11293049 11293058 4 76 5.5 0.5 3.0 1.0 85 chr2R 11292973 exon,3` UTR dare -,CG30033 + chr2R 11293016 exon,3` UTR dare -,CG30033 + chr2R 11293058 5` UTR,3` UTR dare -,CG30033 + chr2R_4_11290001 chr2R_11290001 RAL-386 155 chr2R 11472651 11472678 chr2R 11473848 11473874 pogo 6 1196 1.5 0.5 1.0 3.0 1223 chr2R 11472651 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-386 156 chr2R 11673827 11673941 chr2R 11677358 11677445 6 3526 4.0 5.5 4.8 1.0 3618 chr2R 11673827 intron,exon Roc2 -,Tret1-1 + chr2R 11675636 intron Roc2 - chr2R 11677445 intron,exon Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-386 157 chr2R 11826891 11826915 chr2R 11827003 11827022 4 110 1.0 0.0 0.5 2.7 131 chr2R 11826891 3` UTR CG13192 + chr2R 11826956 3` UTR CG13192 + chr2R 11827022 3` UTR CG13192 + chr2R_4_11825001 chr2R_11825001 RAL-386 158 chr2R 12146474 12146502 chr2R 12147595 12147612 8 1117 12.5 22.5 17.5 0.4 1138 chr2R 12146474 intron,3` UTR Hen1 +,CG8878 - chr2R 12147043 intron,exon Hen1 +,CG8878 - chr2R 12147612 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-386 159 chr2R 12145916 12145939 chr2R 12148615 12148632 5 2695 20.0 25.5 22.8 0.2 2716 chr2R 12145916 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148632 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-386 160 chr2R 12187471 12187502 chr2R 12190094 12190124 35 2623 119.0 71.0 95.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_35_12185001 chr2R_12185001 RAL-386 161 chr2R 12481147 12481170 chr2R 12482940 12482958 roo 7 1793 2.5 2.5 2.5 2.0 1811 chr2R 12481147 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482958 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-386 162 chr2R 12501699 12501723 chr2R 12503860 12503866 Rt1c 4 2155 1.0 4.5 2.8 1.1 2167 chr2R 12501699 intron fdl - chr2R 12502782 intron fdl - chr2R 12503866 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-386 163 chr2R 12951675 12951692 chr2R 12951750 12951773 5 78 1.5 2.0 1.8 1.8 98 chr2R 12951675 intron,intron CG44251 -,CG44250 - chr2R 12951724 intron,intron CG44251 -,CG44250 - chr2R 12951773 intron,intron CG44251 -,CG44250 - chr2R_5_12950001 chr2R_12950001 RAL-386 164 chr2R 13309661 13309674 chr2R 13309778 13309792 5 118 1.5 0.0 0.8 2.8 131 chr2R 13309661 intergenic not near genes chr2R 13309726 intergenic not near genes chr2R 13309792 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-386 165 chr2R 13905607 13905630 chr2R 13907589 13907611 Rt1a 6 1977 2.5 3.0 2.8 1.6 2004 chr2R 13905607 intron shot - chr2R 13906609 intron shot - chr2R 13907611 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-386 166 chr2R 14357556 14357575 chr2R 14357646 14357661 4 89 0.5 1.5 1.0 2.0 105 chr2R 14357556 intergenic CG8617 -,Arc1 - chr2R 14357608 intergenic Arc1 -,CG8617 - chr2R 14357661 intergenic Arc1 -,CG8617 - chr2R_4_14355001 chr2R_14355001 RAL-386 167 chr2R 15027490 15027516 chr2R 15027573 15027592 8 83 2.0 1.0 1.5 3.2 102 chr2R 15027490 intron hbs + chr2R 15027541 intron hbs + chr2R 15027592 intron hbs + chr2R_8_15025001 chr2R_15025001 RAL-386 168 chr2R 15092405 15092433 chr2R 15092495 15092522 7 89 0.5 1.0 0.8 3.9 117 chr2R 15092405 5` UTR CR44457 + chr2R 15092464 intergenic CR44457 + chr2R 15092522 intergenic CR44457 + chr2R_7_15090001 chr2R_15090001 RAL-386 169 chr2R 15094895 15094911 chr2R 15094971 15094988 5 76 1.5 2.5 2.0 1.7 93 chr2R 15094895 intergenic not near genes chr2R 15094942 intergenic not near genes chr2R 15094988 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-386 170 chr2R 15250349 15250378 chr2R 15250740 15250749 5 383 1.5 1.5 1.5 2.0 400 chr2R 15250349 intron scb + chr2R 15250549 intron scb + chr2R 15250749 intron scb + chr2R_5_15250001 chr2R_15250001 RAL-386 171 chr2R 15330218 15330239 chr2R 15330351 15330373 5 133 0.5 2.0 1.2 2.3 155 chr2R 15330218 intergenic CR44371 - chr2R 15330296 intergenic CR44371 - chr2R 15330373 intergenic CR44371 - chr2R_5_15330001 chr2R_15330001 RAL-386 172 chr2R 15685369 15685386 chr2R 15685469 15685486 4 100 6.5 0.5 3.5 0.9 117 chr2R 15685369 intron,exon Ranbp11 +,CG30082 - chr2R 15685428 intron,intron Ranbp11 +,CG30082 - chr2R 15685486 intron,intron Ranbp11 +,CG30082 - chr2R_4_15685001 chr2R_15685001 RAL-386 173 chr2R 15696517 15696550 chr2R 15696640 15696673 7 122 3.5 0.5 2.0 2.3 156 chr2R 15696517 intergenic CG33461 +,CG33462 + chr2R 15696595 intergenic CG33461 +,CG33462 + chr2R 15696673 intergenic CG33462 +,CG33461 + chr2R_7_15695001 chr2R_15695001 RAL-386 174 chr2R 16989518 16989521 chr2R 16989754 16989758 4 236 0.0 4.0 2.0 1.3 240 chr2R 16989518 intron Cbp53E + chr2R 16989638 intron Cbp53E + chr2R 16989758 intron Cbp53E + chr2R_4_16985001 chr2R_16985001 RAL-386 175 chr2R 17234372 17234400 chr2R 17234475 17234503 4 104 0.0 0.0 0.0 4.0 131 chr2R 17234372 intron mbl + chr2R 17234438 intron mbl + chr2R 17234503 intron mbl + chr2R_4_17230001 chr2R_17230001 RAL-386 176 chr2R 17459006 17459022 chr2R 17459091 17459107 4 85 1.5 1.0 1.2 1.8 101 chr2R 17459006 intron CG14478 + chr2R 17459056 intron CG14478 + chr2R 17459107 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-386 177 chr2R 17637830 17637851 chr2R 17637910 17637931 4 80 0.0 0.0 0.0 4.0 101 chr2R 17637830 intron CG10936 - chr2R 17637880 intron CG10936 - chr2R 17637931 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-386 178 chr2R 17661550 17661574 chr2R 17661630 17661646 4 78 1.0 0.5 0.8 2.2 96 chr2R 17661550 intron CCHa1-R - chr2R 17661598 intron CCHa1-R - chr2R 17661646 intron CCHa1-R - chr2R_4_17660001 chr2R_17660001 RAL-386 179 chr2R 17709981 17710105 chr2R 17710072 17710183 4 88 0.0 0.0 0.0 4.0 202 chr2R 17709981 intron CG6424 - chr2R 17710082 intron CG6424 - chr2R 17710183 intron CG6424 - chr2R_4_17710001 chr2R_17710001 RAL-386 180 chr2R 17784025 17784057 chr2R 17784265 17784277 pogo 9 236 2.0 4.0 3.0 2.2 252 chr2R 17784025 intergenic mir-31a - chr2R 17784151 intergenic mir-31a - chr2R 17784277 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-386 181 chr2R 17846778 17846814 chr2R 17846862 17846898 11 81 1.5 3.0 2.2 3.4 120 chr2R 17846778 intron,5` UTR olf186-F +,olf186-M + chr2R 17846838 intron,5` UTR olf186-F +,olf186-M + chr2R 17846898 intron,5` UTR olf186-F +,olf186-M + chr2R_11_17845001 chr2R_17845001 RAL-386 182 chr2R 17946279 17946303 chr2R 17946387 17946409 5 106 0.0 0.0 0.0 5.0 130 chr2R 17946279 intergenic not near genes chr2R 17946344 intergenic not near genes chr2R 17946409 intergenic not near genes chr2R_5_17945001 chr2R_17945001 RAL-386 183 chr2R 18575819 18575830 chr2R 18582005 18582010 3S18 6 6185 1.0 4.5 2.8 1.6 6191 chr2R 18575819 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-386 184 chr2R 18590866 18590898 chr2R 18600017 18600050 roo 8 9151 1.0 2.0 1.5 3.2 9184 chr2R 18590866 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-386 185 chr2R 18646416 18646435 chr2R 18646559 18646579 5 144 0.5 0.0 0.2 4.2 163 chr2R 18646416 intron SP2637 - chr2R 18646498 intron SP2637 - chr2R 18646579 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-386 186 chr2R 18785920 18785945 chr2R 18785994 18786024 8 76 1.5 1.0 1.2 3.6 104 chr2R 18785920 intron CG15080 + chr2R 18785972 intron CG15080 + chr2R 18786024 intron CG15080 + chr2R_8_18785001 chr2R_18785001 RAL-386 187 chr2R 20016415 20016426 chr2R 20016493 20016515 4 86 0.5 1.0 0.8 2.2 100 chr2R 20016415 intergenic CR44630 - chr2R 20016465 intergenic CR44630 - chr2R 20016515 3` UTR CR44630 - chr2R_4_20015001 chr2R_20015001 RAL-386 188 chr2R 20032097 20032115 chr2R 20032176 20032194 4 76 1.5 1.0 1.2 1.8 97 chr2R 20032097 intergenic not near genes chr2R 20032146 intergenic not near genes chr2R 20032194 intergenic not near genes chr2R_4_20030001 chr2R_20030001 RAL-386 189 chr2R 20601731 20601754 chr2R 20601814 20601839 6 84 0.0 2.0 1.0 3.0 108 chr2R 20601731 intron bl + chr2R 20601785 intron bl + chr2R 20601839 intron bl + chr2R_6_20600001 chr2R_20600001 RAL-386 190 chr2R 20739448 20739474 chr2R 20744215 20744242 F-element 4 4766 0.0 4.5 2.2 1.2 4794 chr2R 20739448 intron dpr + chr2R 20741845 intron dpr + chr2R 20744242 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-386 191 chr2R 20783311 20783333 chr2R 20788083 20788105 F-element 4 4770 0.5 2.0 1.2 1.8 4794 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-386 192 chr2R 20962915 20962937 chr2R 20963013 20963034 8 97 1.0 6.0 3.5 1.8 119 chr2R 20962915 intergenic not near genes chr2R 20962974 intergenic not near genes chr2R 20963034 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-386 193 chr2R 21262094 21262131 chr2R 21262414 21262448 10 315 10.5 6.0 8.2 1.1 354 chr2R 21262094 intron Rgk3 + chr2R 21262271 intron Rgk3 + chr2R 21262448 intron Rgk3 + chr2R_10_21260001 chr2R_21260001 RAL-386 194 chr2R 21258458 21258460 chr2R 21262897 21262902 4 4440 0.0 11.0 5.5 0.6 4444 chr2R 21258458 intron Rgk3 + chr2R 21260680 intron Rgk3 + chr2R 21262902 intron Rgk3 + chr2R_4_21260001 chr2R_21260001 RAL-386 195 chr2R 21486681 21486709 chr2R 21486778 21486785 4 92 1.5 2.0 1.8 1.4 104 chr2R 21486681 exon Sara + chr2R 21486733 3` UTR Sara + chr2R 21486785 3` UTR Sara + chr2R_4_21485001 chr2R_21485001 RAL-386 196 chr2R 22040180 22040188 chr2R 22040239 22040267 6 71 2.0 4.5 3.2 1.4 87 chr2R 22040180 intergenic not near genes chr2R 22040224 intergenic not near genes chr2R 22040267 intergenic not near genes chr2R_6_22040001 chr2R_22040001 RAL-386 197 chr2R 22085834 22085847 chr2R 22085901 22085909 7 69 3.5 4.0 3.8 1.5 75 chr2R 22085834 3` UTR CG13502 - chr2R 22085872 3` UTR CG13502 - chr2R 22085909 exon CG13502 - chr2R_7_22085001 chr2R_22085001 RAL-386 198 chr2R 22185679 22185700 chr2R 22185778 22185797 5 98 1.0 0.0 0.5 3.3 118 chr2R 22185679 3` UTR MED16 + chr2R 22185738 3` UTR MED16 + chr2R 22185797 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-386 199 chr2R 22272086 22272097 chr2R 22272184 22272199 7 99 3.0 1.5 2.2 2.2 113 chr2R 22272086 intron dve + chr2R 22272142 intron dve + chr2R 22272199 intron dve + chr2R_7_22270001 chr2R_22270001 RAL-386 200 chr2R 22349690 22349725 chr2R 22351473 22351509 jockey 8 1779 1.5 0.0 0.8 4.4 1819 chr2R 22349690 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-386 201 chr2R 22377815 22377820 chr2R 22377892 22377905 4 83 1.0 1.0 1.0 2.0 90 chr2R 22377815 3` UTR Rtf1 + chr2R 22377860 3` UTR Rtf1 + chr2R 22377905 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-386 202 chr2R 22499851 22499887 chr2R 22499927 22499962 13 74 0.0 3.0 1.5 5.2 111 chr2R 22499851 intron px - chr2R 22499906 intron px - chr2R 22499962 intron px - chr2R_13_22495001 chr2R_22495001 RAL-386 203 chr2R 22507424 22507441 chr2R 22507503 22507521 10 78 2.5 4.5 3.5 2.2 97 chr2R 22507424 intron px - chr2R 22507472 intron px - chr2R 22507521 intron px - chr2R_10_22505001 chr2R_22505001 RAL-386 204 chr2R 22599160 22599191 chr2R 22599251 22599286 4 89 1.0 1.5 1.2 1.8 126 chr2R 22599160 intron CG4269 + chr2R 22599223 intron CG4269 + chr2R 22599286 intron CG4269 + chr2R_4_22595001 chr2R_22595001 RAL-386 205 chr2R 22679750 22679768 chr2R 22679827 22679839 5 72 6.0 1.5 3.8 1.0 89 chr2R 22679750 intergenic not near genes chr2R 22679794 intergenic not near genes chr2R 22679839 intergenic not near genes chr2R_5_22675001 chr2R_22675001 RAL-386 206 chr2R 22679770 22679783 chr2R 22679824 22679842 11 68 3.0 1.5 2.2 3.4 72 chr2R 22679770 intergenic not near genes chr2R 22679806 intergenic not near genes chr2R 22679842 intergenic not near genes chr2R_11_22675001 chr2R_22675001 RAL-386 207 chr2R 22723235 22723256 chr2R 22723311 22723331 6 75 1.0 0.0 0.5 4.0 96 chr2R 22723235 intron jbug - chr2R 22723283 intron jbug - chr2R 22723331 intron jbug - chr2R_6_22720001 chr2R_22720001 RAL-386 208 chr2R 22756557 22756582 chr2R 22756630 22756659 10 76 2.5 3.0 2.8 2.6 102 chr2R 22756557 intron,intron CG42260 -,CR30267 + chr2R 22756608 intron,intron CG42260 -,CR30267 + chr2R 22756659 intron,intron CG42260 -,CR30267 + chr2R_10_22755001 chr2R_22755001 RAL-386 209 chr2R 22788421 22788430 chr2R 22788528 22788537 4 107 0.5 2.0 1.2 1.8 116 chr2R 22788421 intron CG42260 - chr2R 22788479 intron CG42260 - chr2R 22788537 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-386 210 chr2R 23257520 23257626 chr2R 23257603 23257764 5 117 1.0 1.0 1.0 2.5 244 chr2R 23257520 intergenic not near genes chr2R 23257642 intergenic not near genes chr2R 23257764 intergenic not near genes chr2R_5_23255001 chr2R_23255001 RAL-386 211 chr2R 23518196 23518221 chr2R 23518273 23518298 4 77 1.0 0.5 0.8 2.2 102 chr2R 23518196 intergenic not near genes chr2R 23518247 intergenic not near genes chr2R 23518298 intergenic not near genes chr2R_4_23515001 chr2R_23515001 RAL-386 212 chr2R 23529575 23529601 chr2R 23537148 23537162 412 9 7569 4.5 4.0 4.2 1.7 7587 chr2R 23529575 intron bw - chr2R 23533368 intron bw - chr2R 23537162 exon bw - chr2R_9_23530001 chr2R_23530001 RAL-386 213 chr2R 23603447 23603472 chr2R 23603524 23603533 4 74 1.0 2.5 1.8 1.4 86 chr2R 23603447 exon CG5398 + chr2R 23603490 exon CG5398 + chr2R 23603533 exon CG5398 + chr2R_4_23600001 chr2R_23600001 RAL-386 214 chr2R 23653973 23654004 chr2R 23654050 23654070 5 71 5.0 1.0 3.0 1.2 97 chr2R 23653973 3` UTR retn + chr2R 23654022 3` UTR retn + chr2R 23654070 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-386 215 chr2R 23718286 23718314 chr2R 23718427 23718460 13 147 27.0 42.0 34.5 0.4 174 chr2R 23718286 intron Sesn + chr2R 23718373 intron Sesn + chr2R 23718460 intron Sesn + chr2R_13_23715001 chr2R_23715001 RAL-386 216 chr2R 23784476 23784507 chr2R 23784554 23784585 4 78 1.0 1.0 1.0 2.0 109 chr2R 23784476 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-386 217 chr2R 23914300 23914330 chr2R 23921923 23921954 412 6 7619 3.0 3.5 3.2 1.4 7654 chr2R 23914300 exon kcc + chr2R 23918127 intron kcc + chr2R 23921954 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-386 218 chr2R 23986517 23986538 chr2R 23986596 23986617 6 79 1.5 2.5 2.0 2.0 100 chr2R 23986517 intron Phm - chr2R 23986567 intron Phm - chr2R 23986617 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-386 219 chr2R 24082684 24082701 chr2R 24082782 24082811 6 108 2.5 1.5 2.0 2.0 127 chr2R 24082684 intron CG16786 + chr2R 24082748 intron CG16786 + chr2R 24082811 intron CG16786 + chr2R_6_24080001 chr2R_24080001 RAL-386 220 chr2R 24147074 24147096 chr2R 24154646 24154662 412 7 7572 2.0 3.5 2.8 1.8 7588 chr2R 24147074 intron Dat + chr2R 24150868 intron Dat + chr2R 24154662 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-386 221 chr2R 24242203 24242240 chr2R 24242282 24242289 12 70 6.0 4.0 5.0 2.0 86 chr2R 24242203 intergenic not near genes chr2R 24242246 intergenic not near genes chr2R 24242289 intergenic not near genes chr2R_12_24240001 chr2R_24240001 RAL-386 222 chr2R 24722364 24722394 chr2R 24722446 24722475 5 81 1.5 0.5 1.0 2.5 111 chr2R 24722364 intron Mid1 - chr2R 24722420 intron Mid1 - chr2R 24722475 intron Mid1 - chr2R_5_24720001 chr2R_24720001 RAL-386 223 chr2R 24727888 24727917 chr2R 24735392 24735405 mdg1 11 7504 2.0 5.0 3.5 2.4 7517 chr2R 24727888 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735405 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-386 224 chr2R 24763614 24763643 chr2R 24765590 24765619 G2 12 1974 1.5 7.0 4.2 2.3 2005 chr2R 24763614 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-386 225 chr2R 24805737 24805751 chr2R 24805813 24805840 7 86 2.5 4.5 3.5 1.6 103 chr2R 24805737 intergenic not near genes chr2R 24805788 intergenic not near genes chr2R 24805840 intergenic not near genes chr2R_7_24805001 chr2R_24805001 RAL-386 226 chr2R 24884051 24884072 chr2R 24884132 24884154 4 82 0.5 1.0 0.8 2.2 103 chr2R 24884051 intron NKAIN + chr2R 24884102 intron NKAIN + chr2R 24884154 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-386 227 chr2R 25004892 25004924 chr2R 25004969 25005001 4 72 0.5 0.0 0.2 3.3 109 chr2R 25004892 intron zip - chr2R 25004946 intron zip - chr2R 25005001 intron zip - chr2R_4_25000001 chr2R_25000001 RAL-386 228 chr2R 25014544 25014572 chr2R 25014619 25014647 7 75 2.5 1.0 1.8 2.5 103 chr2R 25014544 intron uzip + chr2R 25014596 intron uzip + chr2R 25014647 intron uzip + chr2R_7_25010001 chr2R_25010001 RAL-386 229 chr2R 25018345 25018376 chr2R 25018446 25018470 5 99 1.0 1.5 1.2 2.3 125 chr2R 25018345 intron uzip + chr2R 25018408 intron uzip + chr2R 25018470 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-386 230 chr2R 25022642 25022673 chr2R 25022725 25022757 5 84 1.0 1.0 1.0 2.5 115 chr2R 25022642 intron uzip + chr2R 25022700 intron uzip + chr2R 25022757 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-386 231 chr2R 25101276 25101305 chr2R 25101378 25101406 7 100 1.5 2.0 1.8 2.5 130 chr2R 25101276 intron lov - chr2R 25101341 intron lov - chr2R 25101406 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-386 232 chr3L 68980 69008 chr3L 69067 69092 4 85 0.5 0.0 0.2 3.3 112 chr3L 68980 3` UTR Lsp1gamma + chr3L 69036 intergenic Lsp1gamma +,CR44510 + chr3L 69092 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-386 233 chr3L 402692 402702 chr3L 409743 409755 297 4 7051 2.5 1.5 2.0 1.3 7063 chr3L 402692 intergenic not near genes chr3L 406224 intergenic not near genes chr3L 409755 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-386 234 chr3L 649718 649738 chr3L 649806 649811 5 87 2.5 2.0 2.2 1.6 93 chr3L 649718 intron Gale + chr3L 649764 intron Gale + chr3L 649811 intron Gale + chr3L_5_645001 chr3L_645001 RAL-386 235 chr3L 832601 832627 chr3L 832681 832707 9 79 3.5 4.0 3.8 1.9 106 chr3L 832601 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832654 intron CG13900 - chr3L 832707 intron CG13900 - chr3L_9_830001 chr3L_830001 RAL-386 236 chr3L 925181 925209 chr3L 932604 932632 mdg1 6 7424 1.0 1.5 1.2 2.7 7451 chr3L 925181 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-386 237 chr3L 939774 939799 chr3L 940895 940920 jockey 4 1120 3.5 2.5 3.0 1.0 1146 chr3L 939774 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_4_940001 chr3L_940001 RAL-386 238 chr3L 1003052 1003080 chr3L 1003129 1003156 6 77 2.5 2.5 2.5 1.7 104 chr3L 1003052 intron trio - chr3L 1003104 intron trio - chr3L 1003156 intron trio - chr3L_6_1000001 chr3L_1000001 RAL-386 239 chr3L 1011006 1011022 chr3L 1011080 1011086 4 72 1.0 1.5 1.2 1.8 80 chr3L 1011006 intron trio - chr3L 1011046 intron trio - chr3L 1011086 intron trio - chr3L_4_1010001 chr3L_1010001 RAL-386 240 chr3L 1031575 1031611 chr3L 1031651 1031679 5 69 4.5 3.0 3.8 1.0 104 chr3L 1031575 intron trio - chr3L 1031627 intron trio - chr3L 1031679 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-386 241 chr3L 1040549 1040568 chr3L 1040632 1040651 7 84 1.5 0.5 1.0 3.5 102 chr3L 1040549 intron bab1 - chr3L 1040600 intron bab1 - chr3L 1040651 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-386 242 chr3L 1219596 1219625 chr3L 1227329 1227331 412 14 7730 1.5 4.5 3.0 3.5 7735 chr3L 1219596 intron mwh + chr3L 1223464 intron mwh + chr3L 1227331 intron mwh + chr3L_14_1220001 chr3L_1220001 RAL-386 243 chr3L 1257638 1257651 chr3L 1257717 1257729 5 79 0.0 1.0 0.5 3.3 91 chr3L 1257638 intron CG9134 + chr3L 1257684 intron CG9134 + chr3L 1257729 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-386 244 chr3L 1280257 1280265 chr3L 1280393 1280398 5 134 3.0 1.0 2.0 1.7 141 chr3L 1280257 intron CG32333 + chr3L 1280328 intron CG32333 + chr3L 1280398 intron CG32333 + chr3L_5_1280001 chr3L_1280001 RAL-386 245 chr3L 1347159 1347192 chr3L 1347243 1347275 8 80 2.0 3.0 2.5 2.3 116 chr3L 1347159 intron Ptp61F - chr3L 1347217 intron Ptp61F - chr3L 1347275 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-386 246 chr3L 1459327 1459352 chr3L 1459560 1459578 5 228 2.0 3.0 2.5 1.4 251 chr3L 1459327 intron Ptp61F - chr3L 1459452 intron Ptp61F - chr3L 1459578 intron Ptp61F - chr3L_5_1455001 chr3L_1455001 RAL-386 247 chr3L 1726176 1726186 chr3L 1726271 1726277 4 92 2.5 2.5 2.5 1.1 101 chr3L 1726176 intron drpr - chr3L 1726226 intron drpr - chr3L 1726277 intron drpr - chr3L_4_1725001 chr3L_1725001 RAL-386 248 chr3L 2139205 2139225 chr3L 2139286 2139306 4 78 2.0 3.0 2.5 1.1 101 chr3L 2139205 intron zormin - chr3L 2139256 intron zormin - chr3L 2139306 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-386 249 chr3L 2331582 2331614 chr3L 2331659 2331690 4 76 0.0 0.0 0.0 4.0 108 chr3L 2331582 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331690 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-386 250 chr3L 2533651 2533681 chr3L 2533732 2533761 4 78 1.5 1.0 1.2 1.8 110 chr3L 2533651 intron Spn - chr3L 2533706 intron Spn - chr3L 2533761 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-386 251 chr3L 2548255 2548282 chr3L 2548343 2548366 4 87 1.0 0.0 0.5 2.7 111 chr3L 2548255 intron Spn - chr3L 2548310 intron Spn - chr3L 2548366 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-386 252 chr3L 2683951 2683972 chr3L 2684026 2684038 4 72 1.5 1.0 1.2 1.8 87 chr3L 2683951 intron Fife - chr3L 2683994 intron Fife - chr3L 2684038 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-386 253 chr3L 3178730 3178740 chr3L 3178813 3178823 4 82 3.0 0.0 1.5 1.6 93 chr3L 3178730 intergenic CG14964 -,Girdin + chr3L 3178776 intergenic Girdin +,CG14964 - chr3L 3178823 intergenic Girdin +,CG14964 - chr3L_4_3175001 chr3L_3175001 RAL-386 254 chr3L 3470158 3470186 chr3L 3470234 3470261 5 75 1.0 0.5 0.8 2.8 103 chr3L 3470158 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470261 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-386 255 chr3L 3577749 3577764 chr3L 3577827 3577838 5 77 0.0 2.5 1.2 2.3 89 chr3L 3577749 intron Eip63E + chr3L 3577794 intron Eip63E + chr3L 3577838 intron Eip63E + chr3L_5_3575001 chr3L_3575001 RAL-386 256 chr3L 3601296 3601324 chr3L 3606607 3606633 copia 5 5309 1.5 0.0 0.8 2.8 5337 chr3L 3601296 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606633 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-386 257 chr3L 3665912 3665946 chr3L 3666002 3666035 7 90 0.0 1.5 0.8 3.9 123 chr3L 3665912 intergenic not near genes chr3L 3665974 intergenic not near genes chr3L 3666035 intergenic not near genes chr3L_7_3665001 chr3L_3665001 RAL-386 258 chr3L 4015732 4015760 chr3L 4015815 4015843 4 82 0.5 0.0 0.2 3.3 111 chr3L 4015732 intergenic not near genes chr3L 4015788 intergenic not near genes chr3L 4015843 intergenic not near genes chr3L_4_4015001 chr3L_4015001 RAL-386 259 chr3L 4146834 4146840 chr3L 4146908 4146912 4 78 0.0 1.5 0.8 2.2 78 chr3L 4146834 intergenic not near genes chr3L 4146873 intergenic not near genes chr3L 4146912 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-386 260 chr3L 4165834 4165835 chr3L 4170542 4170552 4 4708 20.0 19.0 19.5 0.2 4718 chr3L 4165834 intron mas - chr3L 4168193 intergenic CR44529 - chr3L 4170552 5` UTR Ero1L + chr3L_4_4165001 chr3L_4165001 RAL-386 261 chr3L 4195156 4195170 chr3L 4195241 4195274 7 99 0.5 0.5 0.5 4.7 118 chr3L 4195156 exon CG43367 + chr3L 4195215 intron CG43367 + chr3L 4195274 intron CG43367 + chr3L_7_4195001 chr3L_4195001 RAL-386 262 chr3L 4837890 4837922 chr3L 4837968 4837997 8 78 0.5 1.0 0.8 4.4 107 chr3L 4837890 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4837997 3` UTR CG13707 - chr3L_8_4835001 chr3L_4835001 RAL-386 263 chr3L 4858302 4858337 chr3L 4858391 4858407 12 83 4.0 1.5 2.8 3.2 105 chr3L 4858302 intergenic not near genes chr3L 4858354 intergenic not near genes chr3L 4858407 intergenic not near genes chr3L_12_4855001 chr3L_4855001 RAL-386 264 chr3L 5034158 5034191 chr3L 5043310 5043343 roo 5 9149 1.0 0.0 0.5 3.3 9185 chr3L 5034158 intron Con - chr3L 5038750 intron Con - chr3L 5043343 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-386 265 chr3L 5924554 5924577 chr3L 5924809 5924832 5 255 2.0 0.5 1.2 2.3 278 chr3L 5924554 intron Vap-33B + chr3L 5924693 intron Vap-33B + chr3L 5924832 intron Vap-33B + chr3L_5_5920001 chr3L_5920001 RAL-386 266 chr3L 6040378 6040389 chr3L 6042733 6042745 Doc 4 2354 0.5 1.5 1.0 2.0 2367 chr3L 6040378 intergenic Jon65Aiv + chr3L 6041562 intergenic not near genes chr3L 6042745 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-386 267 chr3L 6052665 6052669 chr3L 6052734 6052753 5 81 4.5 9.0 6.8 0.6 88 chr3L 6052665 intron Jon65Aii + chr3L 6052709 intron Jon65Aii + chr3L 6052753 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-386 268 chr3L 6442160 6442170 chr3L 6442374 6442385 5 215 3.5 3.5 3.5 1.1 225 chr3L 6442160 intron CG42747 + chr3L 6442272 intron CG42747 + chr3L 6442385 intron CG42747 + chr3L_5_6440001 chr3L_6440001 RAL-386 269 chr3L 6942062 6942075 chr3L 6942160 6942173 4 98 4.0 1.0 2.5 1.1 111 chr3L 6942062 intergenic not near genes chr3L 6942118 intergenic not near genes chr3L 6942173 intergenic not near genes chr3L_4_6940001 chr3L_6940001 RAL-386 270 chr3L 6974516 6974521 chr3L 6974598 6974621 4 95 0.0 3.5 1.8 1.4 105 chr3L 6974516 intron Galphai - chr3L 6974568 intron Galphai - chr3L 6974621 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-386 271 chr3L 6990723 6990752 chr3L 6990802 6990816 5 75 1.5 0.5 1.0 2.5 93 chr3L 6990723 5` UTR bin + chr3L 6990770 5` UTR bin + chr3L 6990816 5` UTR bin + chr3L_5_6990001 chr3L_6990001 RAL-386 272 chr3L 7112587 7112609 chr3L 7112674 7112695 5 86 1.0 1.5 1.2 2.3 108 chr3L 7112587 intron form3 + chr3L 7112641 intron form3 + chr3L 7112695 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-386 273 chr3L 7150874 7150896 chr3L 7150950 7150971 4 74 0.0 0.5 0.2 3.3 97 chr3L 7150874 intron corn - chr3L 7150922 intron corn - chr3L 7150971 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-386 274 chr3L 7244931 7244963 chr3L 7245021 7245049 6 90 3.0 1.5 2.2 1.9 118 chr3L 7244931 exon mei-P22 + chr3L 7244990 exon mei-P22 + chr3L 7245049 exon mei-P22 + chr3L_6_7240001 chr3L_7240001 RAL-386 275 chr3L 7377325 7377345 chr3L 7380422 7380450 297 5 3101 0.0 1.5 0.8 2.8 3125 chr3L 7377325 intron SMSr - chr3L 7378888 intron SMSr - chr3L 7380450 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-386 276 chr3L 7505790 7505800 chr3L 7505852 7505873 5 75 14.5 13.0 13.8 0.3 83 chr3L 7505790 exon CG7548 - chr3L 7505832 exon CG7548 - chr3L 7505873 exon CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-386 277 chr3L 7591146 7591180 chr3L 7591236 7591271 4 87 1.0 1.5 1.2 1.8 125 chr3L 7591146 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591271 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-386 278 chr3L 8203546 8203563 chr3L 8203617 8203628 8 71 4.5 2.5 3.5 1.8 82 chr3L 8203546 intergenic CG13679 + chr3L 8203587 intergenic CG13679 + chr3L 8203628 intergenic CG13679 + chr3L_8_8200001 chr3L_8200001 RAL-386 279 chr3L 8295791 8295823 chr3L 8295949 8295979 5 155 0.0 0.5 0.2 4.2 188 chr3L 8295791 intergenic CG7201 - chr3L 8295885 intergenic not near genes chr3L 8295979 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-386 280 chr3L 8481784 8481804 chr3L 8490943 8490953 roo 6 9156 2.5 5.5 4.0 1.2 9169 chr3L 8481784 intron CG43163 - chr3L 8486368 intron CG43163 - chr3L 8490953 intron CG43163 - chr3L_6_8485001 chr3L_8485001 RAL-386 281 chr3L 8591274 8591280 chr3L 8591392 8591399 5 125 4.0 2.0 3.0 1.2 125 chr3L 8591274 intron CG43078 + chr3L 8591336 intron CG43078 + chr3L 8591399 intron CG43078 + chr3L_5_8590001 chr3L_8590001 RAL-386 282 chr3L 8643650 8643670 chr3L 8643734 8643754 6 82 0.0 1.5 0.8 3.3 104 chr3L 8643650 intergenic Cpr66D + chr3L 8643702 intergenic Cpr66D + chr3L 8643754 intergenic Cpr66D + chr3L_6_8640001 chr3L_8640001 RAL-386 283 chr3L 8791272 8791294 chr3L 8796691 8796714 I-element 6 5419 3.5 2.0 2.8 1.6 5442 chr3L 8791272 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796714 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-386 284 chr3L 9013691 9013692 chr3L 18417066 18417066 4 9403375 18.0 2.5 10.2 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-386 285 chr3L 9443509 9443533 chr3L 9445300 9445324 S-element 4 1789 0.5 2.5 1.5 1.6 1815 chr3L 9443509 intron CG33926 + chr3L 9444416 intron CG33926 + chr3L 9445324 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-386 286 chr3L 9575910 9575941 chr3L 9580988 9581000 jockey 4 5073 0.0 1.0 0.5 2.7 5090 chr3L 9575910 intron CG42673 + chr3L 9578455 intron CG42673 + chr3L 9581000 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-386 287 chr3L 9637854 9637881 chr3L 9637935 9637960 7 81 2.5 1.5 2.0 2.3 106 chr3L 9637854 intron fry - chr3L 9637907 intron fry - chr3L 9637960 intron fry - chr3L_7_9635001 chr3L_9635001 RAL-386 288 chr3L 9732422 9732439 chr3L 9732500 9732517 4 78 3.5 1.5 2.5 1.1 95 chr3L 9732422 exon CG6749 - chr3L 9732470 intron CG6749 - chr3L 9732517 intron CG6749 - chr3L_4_9730001 chr3L_9730001 RAL-386 289 chr3L 10219241 10219265 chr3L 10219337 10219362 5 96 2.0 0.0 1.0 2.5 121 chr3L 10219241 exon CG32055 - chr3L 10219302 exon CG32055 - chr3L 10219362 exon CG32055 - chr3L_5_10215001 chr3L_10215001 RAL-386 290 chr3L 11187717 11187742 chr3L 11187797 11187823 5 81 0.0 1.0 0.5 3.3 106 chr3L 11187717 intron GlcAT-P - chr3L 11187770 intron GlcAT-P - chr3L 11187823 intron GlcAT-P - chr3L_5_11185001 chr3L_11185001 RAL-386 291 chr3L 11290626 11290657 chr3L 11290949 11290977 4 322 1.0 1.0 1.0 2.0 351 chr3L 11290626 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11290977 intron CG6175 - chr3L_4_11290001 chr3L_11290001 RAL-386 292 chr3L 11723091 11723113 chr3L 11727885 11727908 Doc 5 4794 2.0 1.0 1.5 2.0 4817 chr3L 11723091 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-386 293 chr3L 11864554 11864570 chr3L 11865848 11865865 pogo 5 1295 2.5 2.0 2.2 1.6 1311 chr3L 11864554 intron CG44837 - chr3L 11865210 intron CG44837 - chr3L 11865865 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-386 294 chr3L 11943496 11943520 chr3L 11943595 11943602 4 96 0.0 0.5 0.2 3.3 106 chr3L 11943496 intergenic Rpt4R +,CG5883 - chr3L 11943549 intergenic Rpt4R +,CG5883 - chr3L 11943602 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-386 295 chr3L 12052705 12052725 chr3L 12052794 12052813 4 88 2.5 2.0 2.2 1.2 108 chr3L 12052705 intron rols - chr3L 12052759 intron rols - chr3L 12052813 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-386 296 chr3L 12290255 12290259 chr3L 12290345 12290349 4 90 0.0 0.0 0.0 4.0 94 chr3L 12290255 intergenic CR45658 - chr3L 12290302 intergenic CR45658 - chr3L 12290349 intergenic CR45658 - chr3L_4_12290001 chr3L_12290001 RAL-386 297 chr3L 12929734 12929743 chr3L 12930050 12930057 4 316 0.0 1.0 0.5 2.7 323 chr3L 12929734 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930057 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-386 298 chr3L 13267295 13267313 chr3L 13267408 13267421 4 111 1.0 0.5 0.8 2.2 126 chr3L 13267295 intron caps + chr3L 13267358 intron caps + chr3L 13267421 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-386 299 chr3L 13455754 13455780 chr3L 13455908 13455935 5 152 0.5 1.0 0.8 2.8 181 chr3L 13455754 intron CG10738 + chr3L 13455844 intron CG10738 + chr3L 13455935 intron CG10738 + chr3L_5_13455001 chr3L_13455001 RAL-386 300 chr3L 14036678 14036690 chr3L 14036769 14036783 6 92 4.5 1.0 2.8 1.6 105 chr3L 14036678 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036730 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036783 3` UTR pncr014:3L - chr3L_6_14035001 chr3L_14035001 RAL-386 301 chr3L 14055382 14055403 chr3L 14055698 14055721 4 318 1.0 2.0 1.5 1.6 339 chr3L 14055382 intron CG32138 + chr3L 14055552 intron CG32138 + chr3L 14055721 intron CG32138 + chr3L_4_14055001 chr3L_14055001 RAL-386 302 chr3L 14468454 14468478 chr3L 14473659 14473681 copia 4 5204 0.0 0.0 0.0 4.0 5227 chr3L 14468454 intron bbg - chr3L 14471068 intron bbg - chr3L 14473681 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-386 303 chr3L 15315667 15315686 chr3L 15316844 15316861 5 1177 0.5 2.5 1.5 2.0 1194 chr3L 15315667 intergenic not near genes chr3L 15316264 intergenic not near genes chr3L 15316861 intergenic not near genes chr3L_5_15315001 chr3L_15315001 RAL-386 304 chr3L 15875637 15875665 chr3L 15875799 15875827 5 161 2.0 1.0 1.5 2.0 190 chr3L 15875637 intron pHCl - chr3L 15875732 intron pHCl - chr3L 15875827 intron pHCl - chr3L_5_15875001 chr3L_15875001 RAL-386 305 chr3L 15899237 15899261 chr3L 15899788 15899788 jockey 7 552 2.0 3.5 2.8 1.8 551 chr3L 15899237 intergenic pHCl - chr3L 15899512 intergenic pHCl - chr3L 15899788 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-386 306 chr3L 16102269 16102298 chr3L 16102354 16102368 5 78 1.0 1.0 1.0 2.5 99 chr3L 16102269 exon CG5414 + chr3L 16102318 intron CG5414 + chr3L 16102368 intron CG5414 + chr3L_5_16100001 chr3L_16100001 RAL-386 307 chr3L 16212834 16212844 chr3L 16212901 16212934 4 84 0.0 2.5 1.2 1.8 100 chr3L 16212834 intergenic CG13073 - chr3L 16212884 intergenic CG13073 - chr3L 16212934 intergenic CG13073 - chr3L_4_16210001 chr3L_16210001 RAL-386 308 chr3L 16322829 16322851 chr3L 16322919 16322938 8 89 2.5 0.5 1.5 3.2 109 chr3L 16322829 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322938 intergenic not near genes chr3L_8_16320001 chr3L_16320001 RAL-386 309 chr3L 16610692 16610716 chr3L 16610775 16610791 4 81 0.5 2.0 1.2 1.8 99 chr3L 16610692 3` UTR Su(P) - chr3L 16610742 exon Su(P) - chr3L 16610791 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-386 310 chr3L 16945729 16945760 chr3L 16954880 16954895 roo 7 9146 2.0 1.5 1.8 2.5 9166 chr3L 16945729 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954895 5` UTR Nc73EF + chr3L_7_16950001 chr3L_16950001 RAL-386 311 chr3L 17142732 17142758 chr3L 17142960 17142986 6 226 0.5 2.0 1.2 2.7 254 chr3L 17142732 intron Rbp6 - chr3L 17142859 intron Rbp6 - chr3L 17142986 intron Rbp6 - chr3L_6_17140001 chr3L_17140001 RAL-386 312 chr3L 17250048 17250062 chr3L 17250196 17250219 5 154 1.0 2.5 1.8 1.8 171 chr3L 17250048 intron CR43870 + chr3L 17250134 intron CR43870 + chr3L 17250219 intron CR43870 + chr3L_5_17250001 chr3L_17250001 RAL-386 313 chr3L 17510747 17510766 chr3L 17510830 17510849 5 82 2.5 4.0 3.2 1.2 102 chr3L 17510747 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-386 314 chr3L 17535812 17535847 chr3L 17535925 17535961 5 109 1.0 2.0 1.5 2.0 149 chr3L 17535812 intron Nedd4 + chr3L 17535886 intron Nedd4 + chr3L 17535961 intron Nedd4 + chr3L_5_17535001 chr3L_17535001 RAL-386 315 chr3L 17586967 17586996 chr3L 17587101 17587130 6 134 0.5 2.0 1.2 2.7 163 chr3L 17586967 intron Eip74EF - chr3L 17587048 intron Eip74EF - chr3L 17587130 intron Eip74EF - chr3L_6_17585001 chr3L_17585001 RAL-386 316 chr3L 17790621 17790634 chr3L 17790885 17790899 4 264 1.5 0.5 1.0 2.0 278 chr3L 17790621 intergenic CG42815 - chr3L 17790760 intergenic CG42815 - chr3L 17790899 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-386 317 chr3L 18772408 18772441 chr3L 18781089 18781121 roo 8 8681 0.5 2.0 1.2 3.6 8713 chr3L 18772408 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-386 318 chr3L 19008852 19008870 chr3L 19009186 19009207 jockey 4 336 0.5 2.0 1.2 1.8 355 chr3L 19008852 intron nkd - chr3L 19009030 intron nkd - chr3L 19009207 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-386 319 chr3L 19117041 19117074 chr3L 19124487 19124520 mdg1 7 7443 2.0 1.5 1.8 2.5 7479 chr3L 19117041 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-386 320 chr3L 19288508 19288535 chr3L 19288610 19288613 6 94 6.0 3.5 4.8 1.0 105 chr3L 19288508 intron Gbs-76A - chr3L 19288560 intron Gbs-76A - chr3L 19288613 intron Gbs-76A - chr3L_6_19285001 chr3L_19285001 RAL-386 321 chr3L 19293540 19293572 chr3L 19293626 19293659 7 86 1.0 0.5 0.8 3.9 119 chr3L 19293540 intergenic not near genes chr3L 19293600 intergenic not near genes chr3L 19293659 intergenic not near genes chr3L_7_19290001 chr3L_19290001 RAL-386 322 chr3L 19527932 19527951 chr3L 19528011 19528029 4 78 2.5 2.0 2.2 1.2 97 chr3L 19527932 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528029 intergenic not near genes chr3L_4_19525001 chr3L_19525001 RAL-386 323 chr3L 19845737 19845758 chr3L 19845823 19845835 4 84 3.5 0.5 2.0 1.3 98 chr3L 19845737 intron Papss + chr3L 19845786 intron Papss + chr3L 19845835 intron Papss + chr3L_4_19845001 chr3L_19845001 RAL-386 324 chr3L 20113490 20113506 chr3L 20113585 20113600 4 95 2.0 0.0 1.0 2.0 110 chr3L 20113490 intergenic not near genes chr3L 20113545 intergenic not near genes chr3L 20113600 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-386 325 chr3L 20158908 20158927 chr3L 20159050 20159069 7 139 1.0 1.5 1.2 3.2 161 chr3L 20158908 intron CG42674 - chr3L 20158988 intron CG42674 - chr3L 20159069 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-386 326 chr3L 20257338 20257358 chr3L 20258458 20258478 pogo 6 1119 1.0 1.5 1.2 2.7 1140 chr3L 20257338 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258478 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-386 327 chr3L 20386945 20386965 chr3L 20387047 20387067 5 101 3.0 1.5 2.2 1.6 122 chr3L 20386945 intron fbl + chr3L 20387006 intron fbl + chr3L 20387067 intron fbl + chr3L_5_20385001 chr3L_20385001 RAL-386 328 chr3L 20913754 20913777 chr3L 20913836 20913859 5 78 3.0 2.5 2.8 1.3 105 chr3L 20913754 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913859 intergenic CR43930 - chr3L_5_20910001 chr3L_20910001 RAL-386 329 chr3L 21306151 21306175 chr3L 21315310 21315332 roo 5 9158 0.5 1.5 1.0 2.5 9181 chr3L 21306151 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315332 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-386 330 chr3L 21498848 21498862 chr3L 21500484 21500495 1360 5 1632 5.5 5.5 5.5 0.8 1647 chr3L 21498848 intron Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500495 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-386 331 chr3L 21836733 21836763 chr3L 21836814 21836846 4 83 0.0 1.0 0.5 2.7 113 chr3L 21836733 3` UTR P5CDh1 - chr3L 21836790 3` UTR P5CDh1 - chr3L 21836846 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-386 332 chr3L 22033689 22033709 chr3L 22033767 22033787 5 77 0.5 0.0 0.2 4.2 98 chr3L 22033689 intergenic not near genes chr3L 22033738 intergenic not near genes chr3L 22033787 intergenic not near genes chr3L_5_22030001 chr3L_22030001 RAL-386 333 chr3L 22046187 22046211 chr3L 22046286 22046313 6 102 1.0 1.0 1.0 3.0 126 chr3L 22046187 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046313 intron Oct-TyrR + chr3L_6_22045001 chr3L_22045001 RAL-386 334 chr3L 22099677 22099694 chr3L 22105863 22105880 3S18 4 6186 4.0 0.5 2.2 1.2 6203 chr3L 22099677 intergenic not near genes chr3L 22102778 intergenic not near genes chr3L 22105880 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-386 335 chr3L 22124821 22124841 chr3L 22124901 22124923 5 82 2.0 2.5 2.2 1.6 102 chr3L 22124821 intergenic not near genes chr3L 22124872 intergenic not near genes chr3L 22124923 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-386 336 chr3L 22169459 22169486 chr3L 22169551 22169579 8 92 0.0 0.5 0.2 6.7 120 chr3L 22169459 intron olf413 + chr3L 22169519 intron olf413 + chr3L 22169579 intron olf413 + chr3L_8_22165001 chr3L_22165001 RAL-386 337 chr3L 22447197 22447222 chr3L 22447288 22447313 10 90 3.0 0.5 1.8 3.6 116 chr3L 22447197 intergenic not near genes chr3L 22447255 intergenic not near genes chr3L 22447313 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-386 338 chr3L 22522698 22522729 chr3L 22522775 22522801 9 76 2.0 5.0 3.5 2.0 103 chr3L 22522698 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522801 intergenic not near genes chr3L_9_22520001 chr3L_22520001 RAL-386 339 chr3L 22611503 22611528 chr3L 22611616 22611641 6 113 1.5 0.0 0.8 3.3 138 chr3L 22611503 intron CG14459 - chr3L 22611572 intron CG14459 - chr3L 22611641 intron CG14459 - chr3L_6_22610001 chr3L_22610001 RAL-386 340 chr3L 22617190 22617219 chr3L 22624642 22624668 blood 4 7444 1.5 0.5 1.0 2.0 7478 chr3L 22617190 intron CG14459 - chr3L 22620929 intron CG14459 - chr3L 22624668 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-386 341 chr3L 22656114 22656139 chr3L 22656190 22656216 5 78 2.5 2.0 2.2 1.6 102 chr3L 22656114 intergenic not near genes chr3L 22656165 intergenic not near genes chr3L 22656216 intergenic not near genes chr3L_5_22655001 chr3L_22655001 RAL-386 342 chr3L 22853461 22853721 chr3L 22853548 22853806 11 85 0.5 2.5 1.5 4.4 345 chr3L 22853461 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853806 5` UTR CR43426 + chr3L_11_22850001 chr3L_22850001 RAL-386 343 chr3R 2534155 2534163 chr3R 2541700 2541732 10 7555 5.0 3.0 4.0 2.0 7577 chr3R 2534155 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_10_2535001 chr3R_2535001 RAL-386 344 chr3R 4206076 4206102 chr3R 4211649 4211673 mdg3 4 5573 2.0 0.0 1.0 2.0 5597 chr3R 4206076 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211673 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-386 345 chr3R 4408413 4408436 chr3R 4412717 4412740 Juan 5 4304 1.5 2.0 1.8 1.8 4327 chr3R 4408413 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412740 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-386 346 chr3R 4753249 4753256 chr3R 4757550 4757559 F-element 4 4302 7.5 4.0 5.8 0.6 4310 chr3R 4753249 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757559 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-386 347 chr3R 4796120 4796142 chr3R 4796242 4796242 6 118 2.0 3.5 2.8 1.6 122 chr3R 4796120 intron ctrip - chr3R 4796181 intron ctrip - chr3R 4796242 intron ctrip - chr3R_6_4795001 chr3R_4795001 RAL-386 348 chr3R 4861568 4861582 chr3R 4861649 4861655 4 79 1.0 0.5 0.8 2.2 87 chr3R 4861568 intron opa + chr3R 4861612 intron opa + chr3R 4861655 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-386 349 chr3R 5142294 5142320 chr3R 5142377 5142402 5 82 1.5 1.0 1.2 2.3 108 chr3R 5142294 intergenic not near genes chr3R 5142348 intergenic not near genes chr3R 5142402 intergenic not near genes chr3R_5_5140001 chr3R_5140001 RAL-386 350 chr3R 5158145 5158166 chr3R 5158236 5158259 4 92 2.5 2.0 2.2 1.2 114 chr3R 5158145 intron dpr16 + chr3R 5158202 intron dpr16 + chr3R 5158259 intron dpr16 + chr3R_4_5155001 chr3R_5155001 RAL-386 351 chr3R 5698123 5698136 chr3R 5698209 5698230 4 92 2.5 1.0 1.8 1.4 107 chr3R 5698123 intron plx + chr3R 5698176 intron plx + chr3R 5698230 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-386 352 chr3R 5747016 5747042 chr3R 5753204 5753227 diver 5 6189 0.5 0.5 0.5 3.3 6211 chr3R 5747016 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753227 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-386 353 chr3R 5822391 5822400 chr3R 5823558 5823563 1360 4 1166 2.5 4.0 3.2 1.0 1172 chr3R 5822391 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823563 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-386 354 chr3R 6015981 6015995 chr3R 6024443 6024476 Tirant 4 8472 0.0 4.0 2.0 1.3 8495 chr3R 6015981 intergenic not near genes chr3R 6020228 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-386 355 chr3R 6158517 6158537 chr3R 6167099 6167120 Tirant 6 8581 1.0 4.0 2.5 1.7 8603 chr3R 6158517 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-386 356 chr3R 6175172 6175204 chr3R 6182444 6182463 HMS-Beagle2 6 7270 1.0 0.0 0.5 4.0 7291 chr3R 6175172 intergenic Osi1 + chr3R 6178818 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_6_6175001 chr3R_6175001 RAL-386 357 chr3R 6578890 6578916 chr3R 6579008 6579035 6 119 1.5 2.5 2.0 2.0 145 chr3R 6578890 intron dpr11 - chr3R 6578962 intron dpr11 - chr3R 6579035 intron dpr11 - chr3R_6_6575001 chr3R_6575001 RAL-386 358 chr3R 6737499 6737527 chr3R 6739285 6739314 Doc 5 1784 3.5 1.0 2.2 1.6 1815 chr3R 6737499 intron pb - chr3R 6738406 intron pb - chr3R 6739314 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-386 359 chr3R 6842789 6842811 chr3R 6842859 6842894 4 80 1.5 0.0 0.8 2.2 105 chr3R 6842789 intron Scr - chr3R 6842842 intron Scr - chr3R 6842894 intron Scr - chr3R_4_6840001 chr3R_6840001 RAL-386 360 chr3R 6918064 6918092 chr3R 6918139 6918168 6 77 0.5 2.0 1.2 2.7 104 chr3R 6918064 intron Antp - chr3R 6918116 intron Antp - chr3R 6918168 intron Antp - chr3R_6_6915001 chr3R_6915001 RAL-386 361 chr3R 6958925 6958953 chr3R 6959136 6959164 7 210 0.5 1.0 0.8 3.9 239 chr3R 6958925 intron Antp - chr3R 6959044 intron Antp - chr3R 6959164 intron Antp - chr3R_7_6955001 chr3R_6955001 RAL-386 362 chr3R 7026859 7026886 chr3R 7026940 7026972 6 84 0.5 0.5 0.5 4.0 113 chr3R 7026859 intergenic not near genes chr3R 7026916 intergenic not near genes chr3R 7026972 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-386 363 chr3R 7103287 7103317 chr3R 7103362 7103387 6 73 3.5 1.0 2.2 1.9 100 chr3R 7103287 intron Alh - chr3R 7103337 intron Alh - chr3R 7103387 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-386 364 chr3R 7680420 7680457 chr3R 7680502 7680539 6 79 0.5 1.0 0.8 3.3 119 chr3R 7680420 intron Nlg1 + chr3R 7680480 intron Nlg1 + chr3R 7680539 intron Nlg1 + chr3R_6_7680001 chr3R_7680001 RAL-386 365 chr3R 7687815 7687822 chr3R 7687880 7687905 4 73 0.5 0.0 0.2 3.3 90 chr3R 7687815 intron Nlg1 + chr3R 7687860 intron Nlg1 + chr3R 7687905 intron Nlg1 + chr3R_4_7685001 chr3R_7685001 RAL-386 366 chr3R 8339247 8339247 chr3R 21907534 21907536 4 13568288 6.0 6.5 6.2 0.6 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-386 367 chr3R 8403011 8403040 chr3R 8412177 8412206 roo 5 9163 3.0 2.5 2.8 1.3 9195 chr3R 8403011 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-386 368 chr3R 8459797 8459823 chr3R 8459910 8459937 6 113 2.5 1.5 2.0 2.0 140 chr3R 8459797 intron CG45263 - chr3R 8459867 intron CG45263 - chr3R 8459937 intron CG45263 - chr3R_6_8455001 chr3R_8455001 RAL-386 369 chr3R 8541343 8541368 chr3R 8541421 8541447 5 78 1.0 2.5 1.8 1.8 104 chr3R 8541343 intergenic not near genes chr3R 8541395 intergenic not near genes chr3R 8541447 intergenic not near genes chr3R_5_8540001 chr3R_8540001 RAL-386 370 chr3R 8620673 8620684 chr3R 8620748 8620760 4 74 2.5 0.5 1.5 1.6 87 chr3R 8620673 intron 5-HT2B + chr3R 8620716 intron 5-HT2B + chr3R 8620760 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-386 371 chr3R 9586698 9586714 chr3R 9586790 9586806 6 90 0.0 0.5 0.2 5.0 108 chr3R 9586698 intergenic CG8301 +,P58IPK + chr3R 9586752 intergenic CG8301 +,P58IPK + chr3R 9586806 intergenic P58IPK +,CG8301 + chr3R_6_9585001 chr3R_9585001 RAL-386 372 chr3R 10073773 10073794 chr3R 10073880 10073902 4 108 2.5 1.0 1.8 1.4 129 chr3R 10073773 intergenic nerfin-2 +,CG5361 - chr3R 10073838 3` UTR CG5361 - chr3R 10073902 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-386 373 chr3R 10349846 10349856 chr3R 10349910 10349917 4 70 1.0 2.0 1.5 1.6 71 chr3R 10349846 exon CG31406 + chr3R 10349882 exon CG31406 + chr3R 10349917 3` UTR CG31406 + chr3R_4_10345001 chr3R_10345001 RAL-386 374 chr3R 10430673 10430704 chr3R 10430762 10430791 7 88 1.5 1.0 1.2 3.2 118 chr3R 10430673 intergenic not near genes chr3R 10430732 intergenic not near genes chr3R 10430791 intergenic not near genes chr3R_7_10430001 chr3R_10430001 RAL-386 375 chr3R 10636758 10636770 chr3R 10636907 10636918 5 150 0.0 2.0 1.0 2.5 160 chr3R 10636758 intergenic not near genes chr3R 10636838 intergenic not near genes chr3R 10636918 intergenic not near genes chr3R_5_10635001 chr3R_10635001 RAL-386 376 chr3R 10886881 10886901 chr3R 10886958 10886980 5 79 1.0 2.0 1.5 2.0 99 chr3R 10886881 intron Leash + chr3R 10886930 intron Leash + chr3R 10886980 intron Leash + chr3R_5_10885001 chr3R_10885001 RAL-386 377 chr3R 11102322 11102350 chr3R 11102403 11102428 7 78 2.5 2.0 2.2 2.2 106 chr3R 11102322 intergenic not near genes chr3R 11102375 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-386 378 chr3R 11303085 11303114 chr3R 11303163 11303191 6 78 2.5 1.5 2.0 2.0 106 chr3R 11303085 intron CR31386 - chr3R 11303138 intron CR31386 - chr3R 11303191 intron CR31386 - chr3R_6_11300001 chr3R_11300001 RAL-386 379 chr3R 11558365 11558374 chr3R 11560680 11560709 4 2329 12.0 15.0 13.5 0.3 2344 chr3R 11558365 intron CG10898 + chr3R 11559537 3` UTR CG10898 + chr3R 11560709 3` UTR,exon fabp -,sea - chr3R_4_11555001 chr3R_11555001 RAL-386 380 chr3R 11589766 11589793 chr3R 11589859 11589883 7 96 1.0 2.0 1.5 2.8 117 chr3R 11589766 exon CG6791 - chr3R 11589824 5` UTR CG6791 - chr3R 11589883 5` UTR CG6791 - chr3R_7_11585001 chr3R_11585001 RAL-386 381 chr3R 11710212 11710234 chr3R 11710288 11710305 6 75 3.5 1.0 2.2 1.9 93 chr3R 11710212 intergenic not near genes chr3R 11710258 intergenic not near genes chr3R 11710305 intergenic not near genes chr3R_6_11710001 chr3R_11710001 RAL-386 382 chr3R 11749218 11749243 chr3R 11749304 11749328 4 85 1.0 0.5 0.8 2.2 110 chr3R 11749218 intron CG6923 - chr3R 11749273 intron CG6923 - chr3R 11749328 intron CG6923 - chr3R_4_11745001 chr3R_11745001 RAL-386 383 chr3R 12082004 12082019 chr3R 12082078 12082080 5 73 1.0 1.5 1.2 2.3 76 chr3R 12082004 intron CG14741 - chr3R 12082042 intron CG14741 - chr3R 12082080 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-386 384 chr3R 12541173 12541204 chr3R 12543309 12543335 6 2135 1.5 1.0 1.2 2.7 2162 chr3R 12541173 intron Octbeta3R - chr3R 12542254 intron Octbeta3R - chr3R 12543335 intron Octbeta3R - chr3R_6_12540001 chr3R_12540001 RAL-386 385 chr3R 12555440 12555462 chr3R 12555519 12555540 4 74 0.5 1.5 1.0 2.0 100 chr3R 12555440 intron Octbeta2R - chr3R 12555490 intron Octbeta2R - chr3R 12555540 intron Octbeta2R - chr3R_4_12555001 chr3R_12555001 RAL-386 386 chr3R 12599013 12599028 chr3R 12599145 12599166 4 130 5.0 4.0 4.5 0.7 153 chr3R 12599013 intergenic not near genes chr3R 12599090 intergenic not near genes chr3R 12599166 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-386 387 chr3R 12620807 12620825 chr3R 12622147 12622176 7 1347 1.0 1.5 1.2 3.2 1369 chr3R 12620807 intergenic not near genes chr3R 12621492 intergenic not near genes chr3R 12622176 intergenic not near genes chr3R_7_12620001 chr3R_12620001 RAL-386 388 chr3R 13045789 13045803 chr3R 13053025 13053039 10 7237 37.5 32.5 35.0 0.3 7250 chr3R 13045789 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053039 intron pic + chr3R_10_13045001 chr3R_13045001 RAL-386 389 chr3R 13059972 13059974 chr3R 13060166 13060168 4 194 0.5 1.5 1.0 2.0 196 chr3R 13059972 intron sim + chr3R 13060070 intron sim + chr3R 13060168 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-386 390 chr3R 13206651 13206679 chr3R 13206887 13206904 6 234 0.5 0.5 0.5 4.0 253 chr3R 13206651 intergenic not near genes chr3R 13206778 intergenic not near genes chr3R 13206904 intergenic not near genes chr3R_6_13205001 chr3R_13205001 RAL-386 391 chr3R 13606711 13606725 chr3R 13606858 13606870 4 146 4.5 3.5 4.0 0.8 159 chr3R 13606711 intergenic CG9759 - chr3R 13606790 intergenic CG9759 - chr3R 13606870 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-386 392 chr3R 13672953 13672973 chr3R 13673031 13673051 5 78 0.0 2.0 1.0 2.5 98 chr3R 13672953 intron Task6 - chr3R 13673002 intron Task6 - chr3R 13673051 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-386 393 chr3R 13693028 13693028 chr3R 21907534 21907536 7 8214507 2.0 6.5 4.2 1.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-386 394 chr3R 14070130 14070146 chr3R 14070209 14070227 5 80 3.0 1.0 2.0 1.7 97 chr3R 14070130 intron foxo + chr3R 14070178 intron foxo + chr3R 14070227 intron foxo + chr3R_5_14070001 chr3R_14070001 RAL-386 395 chr3R 14253703 14253715 chr3R 14253782 14253787 4 76 1.0 1.0 1.0 2.0 84 chr3R 14253703 intron Aats-met - chr3R 14253745 intron Aats-met - chr3R 14253787 intron Aats-met - chr3R_4_14250001 chr3R_14250001 RAL-386 396 chr3R 14497422 14497435 chr3R 14497488 14497512 5 73 1.0 0.5 0.8 2.8 90 chr3R 14497422 intron CR44177 + chr3R 14497467 intron CR44177 + chr3R 14497512 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-386 397 chr3R 14630556 14630563 chr3R 14630616 14630641 4 76 2.0 2.5 2.2 1.2 85 chr3R 14630556 intron,5` UTR CG7886 -,Cad88C + chr3R 14630598 intron,5` UTR CG7886 -,Cad88C + chr3R 14630641 intron,5` UTR CG7886 -,Cad88C + chr3R_4_14630001 chr3R_14630001 RAL-386 398 chr3R 14869865 14869895 chr3R 14869956 14869986 4 89 0.0 0.5 0.2 3.3 121 chr3R 14869865 intron btsz - chr3R 14869926 intron btsz - chr3R 14869986 intron btsz - chr3R_4_14865001 chr3R_14865001 RAL-386 399 chr3R 15004198 15004224 chr3R 15004284 15004310 6 85 1.5 1.5 1.5 2.4 112 chr3R 15004198 intergenic CR45599 - chr3R 15004254 intergenic CR45599 - chr3R 15004310 3` UTR CR45599 - chr3R_6_15000001 chr3R_15000001 RAL-386 400 chr3R 15071193 15071217 chr3R 15071318 15071341 4 124 3.0 4.5 3.8 0.8 148 chr3R 15071193 intron dpr9 - chr3R 15071267 intron dpr9 - chr3R 15071341 intron dpr9 - chr3R_4_15070001 chr3R_15070001 RAL-386 401 chr3R 15132071 15132082 chr3R 15135130 15135142 Juan 4 3059 3.0 2.5 2.8 1.1 3071 chr3R 15132071 intergenic CG42788 - chr3R 15133606 intergenic not near genes chr3R 15135142 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-386 402 chr3R 15286987 15286988 chr3R 21907534 21907536 12 6620548 5.5 6.5 6.0 1.7 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_12_18595001 chr3R_18595001 RAL-386 403 chr3R 15527615 15527631 chr3R 15527708 15527727 6 92 2.5 1.0 1.8 2.1 112 chr3R 15527615 intergenic not near genes chr3R 15527671 intergenic not near genes chr3R 15527727 intergenic not near genes chr3R_6_15525001 chr3R_15525001 RAL-386 404 chr3R 15594656 15594676 chr3R 15594738 15594757 5 81 0.0 2.5 1.2 2.3 101 chr3R 15594656 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594757 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-386 405 chr3R 16756318 16756352 chr3R 16762509 16762541 diver 6 6189 0.0 0.0 0.0 6.0 6223 chr3R 16756318 intron bxd - chr3R 16759430 intron bxd - chr3R 16762541 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-386 406 chr3R 16996309 16996330 chr3R 16996384 16996406 6 75 1.0 2.0 1.5 2.4 97 chr3R 16996309 intergenic CG3534 +,CG17556 - chr3R 16996358 intergenic CG3534 +,CG17556 - chr3R 16996406 intergenic CG3534 +,CG17556 - chr3R_6_16995001 chr3R_16995001 RAL-386 407 chr3R 17371419 17371432 chr3R 17371477 17371490 4 61 0.5 1.0 0.8 2.2 71 chr3R 17371419 3` UTR CR44256 - chr3R 17371454 3` UTR CR44256 - chr3R 17371490 3` UTR CR44256 - chr3R_4_17370001 chr3R_17370001 RAL-386 408 chr3R 17746595 17746617 chr3R 17746671 17746693 6 72 2.5 1.5 2.0 2.0 98 chr3R 17746595 3` UTR TyrRII + chr3R 17746644 3` UTR TyrRII + chr3R 17746693 3` UTR TyrRII + chr3R_6_17745001 chr3R_17745001 RAL-386 409 chr3R 18352580 18352600 chr3R 18352673 18352693 8 92 3.0 1.5 2.2 2.5 113 chr3R 18352580 intron CG15803 - chr3R 18352636 intron CG15803 - chr3R 18352693 intron CG15803 - chr3R_8_18350001 chr3R_18350001 RAL-386 410 chr3R 18462970 18462998 chr3R 18463049 18463078 4 79 0.5 1.5 1.0 2.0 108 chr3R 18462970 intron fru - chr3R 18463024 intron fru - chr3R 18463078 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-386 411 chr3R 18474580 18474612 chr3R 18474882 18474900 6 300 0.0 1.5 0.8 3.3 320 chr3R 18474580 intron fru - chr3R 18474740 intron fru - chr3R 18474900 intron fru - chr3R_6_18470001 chr3R_18470001 RAL-386 412 chr3R 18481199 18481210 chr3R 18481281 18481293 4 83 0.5 2.0 1.2 1.8 94 chr3R 18481199 intron fru - chr3R 18481246 intron fru - chr3R 18481293 intron fru - chr3R_4_18480001 chr3R_18480001 RAL-386 413 chr3R 18669868 18669891 chr3R 18669987 18670011 5 119 0.5 1.0 0.8 2.8 143 chr3R 18669868 intron CG7702 + chr3R 18669940 intron CG7702 + chr3R 18670011 intron CG7702 + chr3R_5_18665001 chr3R_18665001 RAL-386 414 chr3R 18730024 18730034 chr3R 18730100 18730109 5 75 5.5 5.0 5.2 0.8 85 chr3R 18730024 intron Cha + chr3R 18730066 intron Cha + chr3R 18730109 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-386 415 chr3R 18791499 18791518 chr3R 18791575 18791589 4 72 1.5 0.0 0.8 2.2 90 chr3R 18791499 intron CG7720 - chr3R 18791544 intron CG7720 - chr3R 18791589 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-386 416 chr3R 18808478 18808506 chr3R 18808552 18808582 6 70 1.0 2.5 1.8 2.1 104 chr3R 18808478 intron CG18208 - chr3R 18808530 intron CG18208 - chr3R 18808582 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-386 417 chr3R 19193004 19193014 chr3R 19197298 19197318 F-element 5 4302 0.0 2.5 1.2 2.3 4314 chr3R 19193004 intron CG31475 + chr3R 19195161 intron CG31475 + chr3R 19197318 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-386 418 chr3R 19648287 19648296 chr3R 19650408 19650427 6 2114 16.0 21.0 18.5 0.3 2140 chr3R 19648287 exon CG6195 - chr3R 19649357 intron CG31220 + chr3R 19650427 exon CG31220 + chr3R_6_19645001 chr3R_19645001 RAL-386 419 chr3R 19793902 19793923 chr3R 19793992 19794015 6 91 4.0 1.5 2.8 1.6 113 chr3R 19793902 intergenic bnl - chr3R 19793958 intergenic bnl - chr3R 19794015 intergenic bnl - chr3R_6_19790001 chr3R_19790001 RAL-386 420 chr3R 19905964 19905999 chr3R 19906043 19906077 12 75 4.0 2.0 3.0 3.0 113 chr3R 19905964 intron RhoGAP92B + chr3R 19906020 intron RhoGAP92B + chr3R 19906077 intron RhoGAP92B + chr3R_12_19905001 chr3R_19905001 RAL-386 421 chr3R 20020154 20020179 chr3R 20020293 20020320 6 133 2.0 2.0 2.0 2.0 166 chr3R 20020154 intron CG4433 - chr3R 20020237 intron CG4433 - chr3R 20020320 intron CG4433 - chr3R_6_20020001 chr3R_20020001 RAL-386 422 chr3R 20266519 20266533 chr3R 20272989 20273004 Burdock 4 6470 1.0 1.5 1.2 1.8 6485 chr3R 20266519 intron cic + chr3R 20269762 intron cic + chr3R 20273004 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-386 423 chr3R 20942809 20942842 chr3R 20942885 20942895 4 64 0.5 3.5 2.0 1.3 86 chr3R 20942809 intron CG31191 - chr3R 20942852 intron CG31191 - chr3R 20942895 intron CG31191 - chr3R_4_20940001 chr3R_20940001 RAL-386 424 chr3R 21014022 21014033 chr3R 21014085 21014110 4 73 2.5 1.0 1.8 1.4 88 chr3R 21014022 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014110 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-386 425 chr3R 21321499 21321516 chr3R 21321594 21321612 4 96 0.0 0.0 0.0 4.0 113 chr3R 21321499 intron CG16791 - chr3R 21321556 intron CG16791 - chr3R 21321612 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-386 426 chr3R 21758690 21758709 chr3R 21758771 21758787 5 78 2.0 4.0 3.0 1.2 97 chr3R 21758690 intergenic CG42335 + chr3R 21758738 intergenic CG42335 + chr3R 21758787 exon CG42335 + chr3R_5_21755001 chr3R_21755001 RAL-386 427 chr3R 13104419 13104420 chr3R 21907534 21907534 9 8803114 9.0 6.5 7.8 1.0 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_9_17505001 chr3R_17505001 RAL-386 428 chr3R 21907534 21907534 chr3R 28831798 28831802 22 6924267 7.5 12.5 10.0 2.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-386 429 chr3R 17389054 17389054 chr3R 21907535 21907535 5 4518481 13.0 6.5 9.8 0.5 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-386 430 chr3R 20177844 20177845 chr3R 21907535 21907535 5 1729690 0.5 6.5 3.5 1.1 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_5_21040001 chr3R_21040001 RAL-386 431 chr3R 21907535 21907535 chr3R 28831801 28831802 37 6924267 7.5 12.5 10.0 3.4 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-386 432 chr3R 21907536 21907536 chr3R 28831801 28831802 30 6924266 7.5 12.5 10.0 2.7 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-386 433 chr3R 21907536 21907536 chr3R 29013340 29013340 4 7105804 7.5 2.5 5.0 0.7 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-386 434 chr3R 22098422 22098435 chr3R 22098512 22098526 6 91 1.5 1.0 1.2 2.7 104 chr3R 22098422 intron CG5778 - chr3R 22098474 intron CG5778 - chr3R 22098526 intron CG5778 - chr3R_6_22095001 chr3R_22095001 RAL-386 435 chr3R 22330603 22330627 chr3R 22332309 22332333 5 1707 9.0 23.5 16.2 0.3 1730 chr3R 22330603 intergenic CG7080 +,CG33721 + chr3R 22331468 exon CG33721 + chr3R 22332333 exon CG13862 + chr3R_5_22330001 chr3R_22330001 RAL-386 436 chr3R 22919168 22919188 chr3R 22919265 22919284 4 96 1.0 6.0 3.5 0.9 116 chr3R 22919168 intron klg + chr3R 22919226 intron klg + chr3R 22919284 intron klg + chr3R_4_22915001 chr3R_22915001 RAL-386 437 chr3R 22968664 22968693 chr3R 22968766 22968785 4 99 1.0 2.5 1.8 1.4 121 chr3R 22968664 intergenic not near genes chr3R 22968724 intergenic not near genes chr3R 22968785 intergenic not near genes chr3R_4_22965001 chr3R_22965001 RAL-386 438 chr3R 23064185 23064196 chr3R 23064285 23064303 9 104 3.5 2.5 3.0 2.2 118 chr3R 23064185 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064303 exon CG17111 - chr3R_9_23060001 chr3R_23060001 RAL-386 439 chr3R 23064873 23064899 chr3R 23064964 23064989 4 90 0.0 3.0 1.5 1.6 116 chr3R 23064873 intron CG17111 - chr3R 23064931 intron CG17111 - chr3R 23064989 intron CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-386 440 chr3R 23073663 23073683 chr3R 23073742 23073771 8 84 5.0 0.0 2.5 2.3 108 chr3R 23073663 intron CG13830 - chr3R 23073717 intron CG13830 - chr3R 23073771 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-386 441 chr3R 23182494 23182522 chr3R 23182611 23182636 4 114 0.0 0.0 0.0 4.0 142 chr3R 23182494 intron Irk1 + chr3R 23182565 intron Irk1 + chr3R 23182636 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-386 442 chr3R 23237449 23237479 chr3R 23237739 23237768 4 290 1.5 1.0 1.2 1.8 319 chr3R 23237449 intron CG4467 - chr3R 23237608 intron CG4467 - chr3R 23237768 intron CG4467 - chr3R_4_23235001 chr3R_23235001 RAL-386 443 chr3R 23503938 23503957 chr3R 23504014 23504039 8 80 2.5 1.0 1.8 2.9 101 chr3R 23503938 intergenic not near genes chr3R 23503988 intergenic not near genes chr3R 23504039 intergenic not near genes chr3R_8_23500001 chr3R_23500001 RAL-386 444 chr3R 23518759 23518782 chr3R 23518836 23518859 7 74 1.0 1.0 1.0 3.5 100 chr3R 23518759 intron Irk2 - chr3R 23518809 intron Irk2 - chr3R 23518859 intron Irk2 - chr3R_7_23515001 chr3R_23515001 RAL-386 445 chr3R 23684697 23684723 chr3R 23685183 23685197 roo 6 476 2.0 6.0 4.0 1.2 500 chr3R 23684697 exon CG18754 + chr3R 23684947 intron CG18754 + chr3R 23685197 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-386 446 chr3R 23868214 23868231 chr3R 23868292 23868309 4 77 2.0 1.5 1.8 1.4 95 chr3R 23868214 intron Pli - chr3R 23868262 intron Pli - chr3R 23868309 intron Pli - chr3R_4_23865001 chr3R_23865001 RAL-386 447 chr3R 23937620 23937640 chr3R 23937718 23937738 10 95 0.5 0.5 0.5 6.7 118 chr3R 23937620 exon Gdh - chr3R 23937679 intron Gdh - chr3R 23937738 exon Gdh - chr3R_10_23935001 chr3R_23935001 RAL-386 448 chr3R 23938675 23938699 chr3R 23939107 23939129 4 432 1.0 2.0 1.5 1.6 454 chr3R 23938675 intron Gdh - chr3R 23938902 intron Gdh - chr3R 23939129 intron Gdh - chr3R_4_23935001 chr3R_23935001 RAL-386 449 chr3R 24072097 24072108 chr3R 24072522 24072522 jockey 4 428 4.5 2.0 3.2 1.0 425 chr3R 24072097 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072522 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-386 450 chr3R 24076931 24076944 chr3R 24078381 24078411 hobo 4 1462 1.5 0.5 1.0 2.0 1480 chr3R 24076931 intron 4EHP - chr3R 24077671 intron 4EHP - chr3R 24078411 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-386 451 chr3R 24199746 24199766 chr3R 24199825 24199833 5 77 0.0 0.5 0.2 4.2 87 chr3R 24199746 intron twin - chr3R 24199790 intron twin - chr3R 24199833 intron twin - chr3R_5_24195001 chr3R_24195001 RAL-386 452 chr3R 24605550 24605557 chr3R 24605647 24605653 4 98 2.0 1.0 1.5 1.6 103 chr3R 24605550 intron mld + chr3R 24605602 intron mld + chr3R 24605653 intron mld + chr3R_4_24605001 chr3R_24605001 RAL-386 453 chr3R 24670055 24670084 chr3R 24670165 24670194 10 109 1.0 0.0 0.5 6.7 139 chr3R 24670055 intron slo + chr3R 24670124 intron slo + chr3R 24670194 intron slo + chr3R_10_24670001 chr3R_24670001 RAL-386 454 chr3R 24671224 24671241 chr3R 24671301 24671308 4 74 3.0 2.5 2.8 1.1 84 chr3R 24671224 intron slo + chr3R 24671266 intron slo + chr3R 24671308 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-386 455 chr3R 24730109 24730119 chr3R 24732483 24732493 Doc 4 2376 2.5 0.5 1.5 1.6 2384 chr3R 24730109 intron tok + chr3R 24731301 intron tok + chr3R 24732493 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-386 456 chr3R 24785089 24785112 chr3R 24785159 24785188 6 74 0.5 1.0 0.8 3.3 99 chr3R 24785089 3` UTR CG5805 - chr3R 24785138 3` UTR CG5805 - chr3R 24785188 3` UTR CG5805 - chr3R_6_24785001 chr3R_24785001 RAL-386 457 chr3R 24973948 24973983 chr3R 24974024 24974058 7 75 2.0 0.5 1.2 3.2 110 chr3R 24973948 intergenic not near genes chr3R 24974003 intergenic not near genes chr3R 24974058 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-386 458 chr3R 25832694 25832719 chr3R 25841875 25841887 roo 4 9177 2.5 3.5 3.0 1.0 9193 chr3R 25832694 exon alpha4GT2 + chr3R 25837290 intron alpha4GT2 + chr3R 25841887 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-386 459 chr3R 26239828 26239845 chr3R 26240138 26240155 4 310 1.5 0.5 1.0 2.0 327 chr3R 26239828 intron CR42745 + chr3R 26239992 intron CR42745 + chr3R 26240155 intron CR42745 + chr3R_4_26235001 chr3R_26235001 RAL-386 460 chr3R 26332883 26332910 chr3R 26332972 26332998 7 86 0.5 2.5 1.5 2.8 115 chr3R 26332883 intron CG33970 + chr3R 26332940 intron CG33970 + chr3R 26332998 intron CG33970 + chr3R_7_26330001 chr3R_26330001 RAL-386 461 chr3R 26376322 26376343 chr3R 26385482 26385501 roo 7 9159 2.0 0.0 1.0 3.5 9179 chr3R 26376322 intergenic not near genes chr3R 26380912 intergenic not near genes chr3R 26385501 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-386 462 chr3R 26607755 26607761 chr3R 26607821 26607837 4 72 2.5 2.0 2.2 1.2 82 chr3R 26607755 5` UTR CR44951 + chr3R 26607796 5` UTR CR44951 + chr3R 26607837 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-386 463 chr3R 26641647 26641664 chr3R 26641732 26641749 5 85 1.5 3.5 2.5 1.4 102 chr3R 26641647 intergenic not near genes chr3R 26641698 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-386 464 chr3R 26642733 26642761 chr3R 26643126 26643154 jockey 4 392 4.0 0.5 2.2 1.2 421 chr3R 26642733 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-386 465 chr3R 26660650 26660671 chr3R 26660734 26660754 6 80 3.0 4.0 3.5 1.3 104 chr3R 26660650 intron beat-VII - chr3R 26660702 intron beat-VII - chr3R 26660754 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-386 466 chr3R 26788112 26788128 chr3R 26788227 26788243 4 115 0.0 1.0 0.5 2.7 131 chr3R 26788112 intergenic not near genes chr3R 26788178 intergenic not near genes chr3R 26788243 intergenic not near genes chr3R_4_26785001 chr3R_26785001 RAL-386 467 chr3R 27140520 27140537 chr3R 27148129 27148147 412 4 7607 2.0 1.5 1.8 1.4 7627 chr3R 27140520 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148147 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-386 468 chr3R 27234303 27234326 chr3R 27240625 27240644 4 6323 30.5 30.0 30.2 0.1 6341 chr3R 27234303 intron,exon CG31064 -,CG31068 + chr3R 27237474 intron CG31064 - chr3R 27240644 exon DNApol-alpha73 + chr3R_4_27235001 chr3R_27235001 RAL-386 469 chr3R 27479154 27479191 chr3R 27479265 27479300 6 107 0.5 1.5 1.0 3.0 146 chr3R 27479154 exon Cyp6a18 + chr3R 27479227 exon Cyp6a18 + chr3R 27479300 exon Cyp6a18 + chr3R_6_27475001 chr3R_27475001 RAL-386 470 chr3R 27519169 27519195 chr3R 27519268 27519291 6 94 0.0 0.5 0.2 5.0 122 chr3R 27519169 intergenic not near genes chr3R 27519230 intergenic not near genes chr3R 27519291 intergenic not near genes chr3R_6_27515001 chr3R_27515001 RAL-386 471 chr3R 27594747 27594770 chr3R 27594832 27594852 4 83 2.0 3.0 2.5 1.1 105 chr3R 27594747 intron CG5639 - chr3R 27594800 intron CG5639 - chr3R 27594852 intron CG5639 - chr3R_4_27590001 chr3R_27590001 RAL-386 472 chr3R 27627112 27627119 chr3R 27627188 27627207 8 93 1.0 2.0 1.5 3.2 95 chr3R 27627112 intron Tusp + chr3R 27627160 intron Tusp + chr3R 27627207 intron Tusp + chr3R_8_27625001 chr3R_27625001 RAL-386 473 chr3R 27705357 27705392 chr3R 27705436 27705452 10 72 3.0 4.0 3.5 2.2 95 chr3R 27705357 exon CG12428 - chr3R 27705404 intron CG12428 - chr3R 27705452 intron CG12428 - chr3R_10_27705001 chr3R_27705001 RAL-386 474 chr3R 27752759 27752790 chr3R 27753142 27753173 6 381 0.0 1.0 0.5 4.0 414 chr3R 27752759 intergenic not near genes chr3R 27752966 intergenic not near genes chr3R 27753173 intergenic not near genes chr3R_6_27750001 chr3R_27750001 RAL-386 475 chr3R 27779270 27779287 chr3R 27779349 27779367 6 78 4.5 7.0 5.8 0.9 97 chr3R 27779270 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_6_27775001 chr3R_27775001 RAL-386 476 chr3R 27841111 27841137 chr3R 27841186 27841218 4 79 1.0 3.5 2.2 1.2 107 chr3R 27841111 intron CG34353 - chr3R 27841164 intron CG34353 - chr3R 27841218 intron CG34353 - chr3R_4_27840001 chr3R_27840001 RAL-386 477 chr3R 28068508 28068527 chr3R 28073933 28073967 I-element 4 5432 0.5 2.5 1.5 1.6 5459 chr3R 28068508 intron CG34362 + chr3R 28071238 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-386 478 chr3R 28103341 28103359 chr3R 28103415 28103416 5 77 1.5 2.0 1.8 1.8 75 chr3R 28103341 intergenic not near genes chr3R 28103378 intergenic not near genes chr3R 28103416 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-386 479 chr3R 28115510 28115543 chr3R 28115586 28115616 5 74 1.0 1.0 1.0 2.5 106 chr3R 28115510 intergenic not near genes chr3R 28115563 intergenic not near genes chr3R 28115616 intergenic not near genes chr3R_5_28115001 chr3R_28115001 RAL-386 480 chr3R 28454206 28454221 chr3R 28454388 28454401 5 182 5.0 0.5 2.8 1.3 195 chr3R 28454206 intron beat-VI + chr3R 28454304 intron beat-VI + chr3R 28454401 intron beat-VI + chr3R_5_28450001 chr3R_28450001 RAL-386 481 chr3R 28601680 28601706 chr3R 28601759 28601763 10 77 2.0 0.5 1.2 4.5 83 chr3R 28601680 intron Hrb98DE + chr3R 28601722 intron,5` UTR Hrb98DE +,snoRNA:Psi28S-3305a + chr3R 28601763 intron,5` UTR Hrb98DE +,snoRNA:Psi28S-3305a + chr3R_10_28600001 chr3R_28600001 RAL-386 482 chr3R 28702928 28702957 chr3R 28703012 28703041 7 83 3.5 2.0 2.8 1.8 113 chr3R 28702928 intron htt + chr3R 28702984 intron htt + chr3R 28703041 intron htt + chr3R_7_28700001 chr3R_28700001 RAL-386 483 chr3R 28739493 28739504 chr3R 28739579 28739587 6 88 0.5 2.0 1.2 2.7 94 chr3R 28739493 intron AstA-R2 - chr3R 28739540 intron AstA-R2 - chr3R 28739587 intron AstA-R2 - chr3R_6_28735001 chr3R_28735001 RAL-386 484 chr3R 28742485 28742510 chr3R 28742561 28742586 4 76 1.0 0.5 0.8 2.2 101 chr3R 28742485 intron AstA-R2 - chr3R 28742536 intron AstA-R2 - chr3R 28742586 intron AstA-R2 - chr3R_4_28740001 chr3R_28740001 RAL-386 485 chr3R 28775019 28775049 chr3R 28775158 28775168 6 135 2.0 2.0 2.0 2.0 149 chr3R 28775019 intergenic not near genes chr3R 28775094 intergenic not near genes chr3R 28775168 intergenic not near genes chr3R_6_28775001 chr3R_28775001 RAL-386 486 chr3R 21907534 21907536 chr3R 28831801 28831802 39 6924266 7.5 12.5 10.0 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-386 487 chr3R 28971173 28971197 chr3R 28971252 28971278 4 80 0.0 0.5 0.2 3.3 105 chr3R 28971173 5` UTR CR45669 + chr3R 28971226 5` UTR CR45669 + chr3R 28971278 5` UTR CR45669 + chr3R_4_28970001 chr3R_28970001 RAL-386 488 chr3R 29332284 29332304 chr3R 29332361 29332381 4 77 2.0 1.5 1.8 1.4 97 chr3R 29332284 intergenic not near genes chr3R 29332332 intergenic not near genes chr3R 29332381 intergenic not near genes chr3R_4_29330001 chr3R_29330001 RAL-386 489 chr3R 29384866 29384877 chr3R 29384990 29385000 4 124 1.0 3.0 2.0 1.3 134 chr3R 29384866 intron Ptp99A + chr3R 29384933 intron Ptp99A + chr3R 29385000 intron Ptp99A + chr3R_4_29380001 chr3R_29380001 RAL-386 490 chr3R 29389491 29389511 chr3R 29389564 29389591 5 78 1.5 3.0 2.2 1.6 100 chr3R 29389491 intron Ptp99A + chr3R 29389541 intron Ptp99A + chr3R 29389591 intron Ptp99A + chr3R_5_29385001 chr3R_29385001 RAL-386 491 chr3R 29406629 29406646 chr3R 29407896 29407932 jockey 4 1276 1.0 1.5 1.2 1.8 1303 chr3R 29406629 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-386 492 chr3R 29516582 29516603 chr3R 29516666 29516666 6 76 4.5 2.0 3.2 1.4 84 chr3R 29516582 intergenic CG2014 + chr3R 29516624 intergenic CG2014 + chr3R 29516666 intergenic CG2014 + chr3R_6_29515001 chr3R_29515001 RAL-386 493 chr3R 29526235 29526260 chr3R 29526322 29526347 5 87 1.0 2.0 1.5 2.0 112 chr3R 29526235 intergenic not near genes chr3R 29526291 intergenic not near genes chr3R 29526347 intergenic not near genes chr3R_5_29525001 chr3R_29525001 RAL-386 494 chr3R 29538064 29538177 chr3R 29538143 29538246 9 78 0.0 0.0 0.0 9.0 182 chr3R 29538064 intergenic not near genes chr3R 29538155 intergenic not near genes chr3R 29538246 intergenic not near genes chr3R_9_29535001 chr3R_29535001 RAL-386 495 chr3R 29539441 29539451 chr3R 29539516 29539524 4 75 3.0 0.0 1.5 1.6 83 chr3R 29539441 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539524 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-386 496 chr3R 29624954 29624991 chr3R 29625030 29625040 6 68 1.5 0.5 1.0 3.0 86 chr3R 29624954 intergenic not near genes chr3R 29624997 intergenic not near genes chr3R 29625040 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-386 497 chr3R 29626691 29626719 chr3R 29626772 29626804 7 78 3.0 0.5 1.8 2.5 113 chr3R 29626691 intergenic not near genes chr3R 29626748 intergenic not near genes chr3R 29626804 intergenic not near genes chr3R_7_29625001 chr3R_29625001 RAL-386 498 chr3R 29719403 29719431 chr3R 29719488 29719517 5 86 1.0 3.0 2.0 1.7 114 chr3R 29719403 intron CG15506 + chr3R 29719460 intron CG15506 + chr3R 29719517 intron CG15506 + chr3R_5_29715001 chr3R_29715001 RAL-386 499 chr3R 29721418 29721428 chr3R 29721509 29721519 5 91 3.0 0.5 1.8 1.8 101 chr3R 29721418 exon CG15506 + chr3R 29721468 intron CG15506 + chr3R 29721519 intron CG15506 + chr3R_5_29720001 chr3R_29720001 RAL-386 500 chr3R 29721431 29721447 chr3R 29721507 29721538 4 77 1.5 0.5 1.0 2.0 107 chr3R 29721431 exon CG15506 + chr3R 29721484 intron CG15506 + chr3R 29721538 intron CG15506 + chr3R_4_29720001 chr3R_29720001 RAL-386 501 chr3R 29738271 29738300 chr3R 29739738 29739767 hobo 7 1466 2.0 1.5 1.8 2.5 1496 chr3R 29738271 intergenic CG1969 +,CG7598 + chr3R 29739019 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-386 502 chr3R 29745672 29745676 chr3R 29745725 29745753 4 67 4.5 7.0 5.8 0.6 81 chr3R 29745672 exon IntS11 + chr3R 29745712 intron IntS11 + chr3R 29745753 intron IntS11 + chr3R_4_29745001 chr3R_29745001 RAL-386 503 chr3R 29882023 29882053 chr3R 29891180 29891209 roo 4 9156 1.0 1.0 1.0 2.0 9186 chr3R 29882023 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-386 504 chr3R 30032161 30032176 chr3R 30032239 30032254 4 78 1.0 1.0 1.0 2.0 93 chr3R 30032161 intron Axn + chr3R 30032208 intron Axn + chr3R 30032254 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-386 505 chr3R 30147544 30147573 chr3R 30147624 30147655 4 81 4.0 1.5 2.8 1.1 111 chr3R 30147544 intron AdoR - chr3R 30147600 intron AdoR - chr3R 30147655 intron AdoR - chr3R_4_30145001 chr3R_30145001 RAL-386 506 chr3R 30268414 30268431 chr3R 30268494 30268506 4 79 3.5 2.5 3.0 1.0 92 chr3R 30268414 intergenic not near genes chr3R 30268460 intergenic not near genes chr3R 30268506 intergenic not near genes chr3R_4_30265001 chr3R_30265001 RAL-386 507 chr3R 30396215 30396240 chr3R 30404481 30404504 roo 4 8263 3.0 3.0 3.0 1.0 8289 chr3R 30396215 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404504 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-386 508 chr3R 30791913 30791942 chr3R 30792024 30792058 9 110 3.0 6.0 4.5 1.6 145 chr3R 30791913 exon wts - chr3R 30791986 intron wts - chr3R 30792058 exon wts - chr3R_9_30790001 chr3R_30790001 RAL-386 509 chr3R 30818827 30818833 chr3R 30820374 30820379 1360 4 1551 1.5 1.0 1.2 1.8 1552 chr3R 30818827 intron cindr + chr3R 30819603 intron cindr + chr3R 30820379 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-386 510 chr3R 30973138 30973166 chr3R 30973298 30973324 4 160 0.5 1.5 1.0 2.0 186 chr3R 30973138 intron 5-HT7 - chr3R 30973231 intron 5-HT7 - chr3R 30973324 intron 5-HT7 - chr3R_4_30970001 chr3R_30970001 RAL-386 511 chr3R 31042116 31042135 chr3R 31042200 31042222 5 86 1.0 3.0 2.0 1.7 106 chr3R 31042116 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042222 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-386 512 chr3R 31205848 31205884 chr3R 31207125 31207162 7 1276 15.0 11.0 13.0 0.5 1314 chr3R 31205848 exon chp - chr3R 31206505 exon chp - chr3R 31207162 exon chp - chr3R_7_31205001 chr3R_31205001 RAL-386 513 chr3R 31201919 31201942 chr3R 31208671 31208688 5 6748 18.5 30.5 24.5 0.2 6769 chr3R 31201919 exon CG1544 + chr3R 31205304 intron chp - chr3R 31208688 exon chp - chr3R_5_31205001 chr3R_31205001 RAL-386 514 chr3R 31453220 31453246 chr3R 31453298 31453323 8 76 2.5 4.0 3.2 1.9 103 chr3R 31453220 intron Gprk2 + chr3R 31453272 intron Gprk2 + chr3R 31453323 exon Gprk2 + chr3R_8_31450001 chr3R_31450001 RAL-386 515 chr3R 31670610 31670634 chr3R 31670704 31670728 6 93 0.5 1.5 1.0 3.0 118 chr3R 31670610 intron CG1815 + chr3R 31670669 intron CG1815 + chr3R 31670728 intron CG1815 + chr3R_6_31670001 chr3R_31670001 RAL-386 516 chr3R 31691533 31691564 chr3R 31696298 31696328 Doc 9 4758 2.0 2.5 2.2 2.8 4795 chr3R 31691533 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-386 517 chr3R 31865045 31865062 chr3R 31865136 31865148 4 88 0.0 3.0 1.5 1.6 103 chr3R 31865045 intron heph - chr3R 31865096 intron heph - chr3R 31865148 exon heph - chr3R_4_31865001 chr3R_31865001 RAL-386 518 chr3R 31931208 31931214 chr3R 31931277 31931295 4 79 0.0 1.5 0.8 2.2 87 chr3R 31931208 intron heph - chr3R 31931252 intron heph - chr3R 31931295 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-386 519 chr4 654366 654395 chr4 654449 654478 4 82 0.0 0.5 0.2 3.3 112 chr4 654366 intron gw - chr4 654422 intron gw - chr4 654478 intron gw - chr4_4_650001 chr4_650001 RAL-386 520 chrX 547630 547658 chrX 547874 547902 4 244 0.0 0.0 0.0 4.0 272 chrX 547630 intron Appl + chrX 547766 intron Appl + chrX 547902 intron Appl + chrX_4_545001 chrX_545001 RAL-386 521 chrX 551426 551444 chrX 558986 558990 412 4 7557 2.0 1.5 1.8 1.4 7564 chrX 551426 intron Appl + chrX 555208 intron Appl + chrX 558990 intron Appl + chrX_4_555001 chrX_555001 RAL-386 522 chrX 680841 680860 chrX 680922 680937 5 79 1.0 1.5 1.2 2.3 96 chrX 680841 intergenic not near genes chrX 680889 intergenic not near genes chrX 680937 intergenic not near genes chrX_5_680001 chrX_680001 RAL-386 523 chrX 778134 778151 chrX 778222 778240 4 89 0.5 0.0 0.2 3.3 106 chrX 778134 intron fz3 + chrX 778187 intron fz3 + chrX 778240 intron fz3 + chrX_4_775001 chrX_775001 RAL-386 524 chrX 1053117 1053118 chrX 16983076 16983077 4 15929959 5.0 1.0 3.0 1.0 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-386 525 chrX 1497342 1497356 chrX 1497403 1497430 6 66 3.0 5.5 4.2 1.2 88 chrX 1497342 intron,intron inc +,Nmdar2 - chrX 1497386 intron,intron inc +,Nmdar2 - chrX 1497430 intron,intron inc +,Nmdar2 - chrX_6_1495001 chrX_1495001 RAL-386 526 chrX 1499992 1500017 chrX 1500079 1500105 6 87 2.5 2.0 2.2 1.9 113 chrX 1499992 intron,intron inc +,Nmdar2 - chrX 1500048 intron,intron inc +,Nmdar2 - chrX 1500105 intron,intron inc +,Nmdar2 - chrX_6_1500001 chrX_1500001 RAL-386 527 chrX 1627980 1627989 chrX 1635448 1635455 gtwin 4 7468 1.0 6.0 3.5 0.9 7475 chrX 1627980 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635455 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-386 528 chrX 1903349 1903356 chrX 1903430 1903433 4 80 3.0 1.0 2.0 1.3 84 chrX 1903349 5` UTR CR43864 + chrX 1903391 5` UTR CR43864 + chrX 1903433 5` UTR CR43864 + chrX_4_1900001 chrX_1900001 RAL-386 529 chrX 1903360 1903372 chrX 1903429 1903452 6 78 2.0 1.0 1.5 2.4 92 chrX 1903360 5` UTR CR43864 + chrX 1903406 5` UTR CR43864 + chrX 1903452 5` UTR CR43864 + chrX_6_1900001 chrX_1900001 RAL-386 530 chrX 2069385 2069402 chrX 2069484 2069501 4 99 0.5 0.5 0.5 2.7 116 chrX 2069385 intron,exon CG4199 -,CG4194 + chrX 2069443 intron,3` UTR CG4199 -,CG4194 + chrX 2069501 intron,3` UTR CG4199 -,CG4194 + chrX_4_2065001 chrX_2065001 RAL-386 531 chrX 2397921 2397930 chrX 2398010 2398024 4 92 1.5 0.0 0.8 2.2 103 chrX 2397921 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398024 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-386 532 chrX 2399836 2399861 chrX 2408188 2408201 roo 7 8343 4.5 0.0 2.2 2.2 8365 chrX 2399836 intergenic not near genes chrX 2404018 intergenic not near genes chrX 2408201 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-386 533 chrX 2578816 2578845 chrX 2578907 2578937 5 92 0.5 1.0 0.8 2.8 121 chrX 2578816 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-386 534 chrX 3493093 3493111 chrX 3502252 3502270 roo 4 9159 2.0 2.0 2.0 1.3 9177 chrX 3493093 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502270 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-386 535 chrX 3986865 3986889 chrX 3994496 3994520 412 5 7631 2.0 1.5 1.8 1.8 7655 chrX 3986865 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994520 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-386 536 chrX 4157903 4157919 chrX 4164956 4164972 297 4 7049 2.5 2.5 2.5 1.1 7069 chrX 4157903 intron Fas2 - chrX 4161438 intron Fas2 - chrX 4164972 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-386 537 chrX 4206232 4206242 chrX 4206346 4206356 5 114 1.0 0.5 0.8 2.8 124 chrX 4206232 intergenic Fas2 - chrX 4206294 intergenic Fas2 - chrX 4206356 intergenic Fas2 - chrX_5_4205001 chrX_4205001 RAL-386 538 chrX 4324403 4324415 chrX 4324478 4324492 4 76 0.5 1.0 0.8 2.2 89 chrX 4324403 intron norpA + chrX 4324448 intron norpA + chrX 4324492 intron norpA + chrX_4_4320001 chrX_4320001 RAL-386 539 chrX 4514496 4514511 chrX 4514580 4514602 4 89 3.0 3.5 3.2 1.0 106 chrX 4514496 intron CR32773 - chrX 4514549 intron CR32773 - chrX 4514602 intron CR32773 - chrX_4_4510001 chrX_4510001 RAL-386 540 chrX 6312192 6312218 chrX 6312275 6312297 4 81 3.0 1.0 2.0 1.3 105 chrX 6312192 intron CG15894 + chrX 6312244 intron CG15894 + chrX 6312297 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-386 541 chrX 6315174 6315186 chrX 6315300 6315314 4 128 0.5 1.5 1.0 2.0 140 chrX 6315174 intron CG15894 + chrX 6315244 intron CG15894 + chrX 6315314 intron CG15894 + chrX_4_6315001 chrX_6315001 RAL-386 542 chrX 6370701 6370730 chrX 6370808 6370837 5 106 0.0 0.0 0.0 5.0 136 chrX 6370701 3` UTR,3` UTR Marf +,CR44816 - chrX 6370769 3` UTR,3` UTR Marf +,CR44816 - chrX 6370837 3` UTR,3` UTR Marf +,CR44816 - chrX_5_6370001 chrX_6370001 RAL-386 543 chrX 6392878 6392892 chrX 6397628 6397654 Doc 5 4759 1.0 2.0 1.5 2.0 4776 chrX 6392878 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397654 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-386 544 chrX 6562817 6562851 chrX 6571299 6571304 Tirant 11 8476 2.5 5.0 3.8 2.3 8487 chrX 6562817 intron CG34417 + chrX 6567060 intron CG34417 + chrX 6571304 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-386 545 chrX 6681154 6681164 chrX 6683111 6683122 6 1967 13.0 18.0 15.5 0.4 1968 chrX 6681154 exon l(1)G0255 + chrX 6682138 intron CG4095 + chrX 6683122 exon CG4095 + chrX_6_6680001 chrX_6680001 RAL-386 546 chrX 7125246 7125274 chrX 7134403 7134433 roo 5 9156 0.5 0.0 0.2 4.2 9187 chrX 7125246 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134433 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-386 547 chrX 7322901 7322924 chrX 7322984 7323008 4 82 1.0 0.5 0.8 2.2 107 chrX 7322901 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322954 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323008 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_4_7320001 chrX_7320001 RAL-386 548 chrX 7845726 7845751 chrX 7847217 7847237 hopper2 4 1486 3.0 1.0 2.0 1.3 1511 chrX 7845726 intergenic not near genes chrX 7846482 intergenic not near genes chrX 7847237 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-386 549 chrX 9508149 9508167 chrX 9509661 9509685 jockey 8 1513 0.5 3.0 1.8 2.9 1536 chrX 9508149 intron CG32700 - chrX 9508917 intron CG32700 - chrX 9509685 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-386 550 chrX 9668731 9668744 chrX 9668809 9668814 4 74 1.5 2.0 1.8 1.4 83 chrX 9668731 3` UTR nej - chrX 9668772 3` UTR nej - chrX 9668814 3` UTR nej - chrX_4_9665001 chrX_9665001 RAL-386 551 chrX 9709681 9709704 chrX 9709765 9709766 5 79 1.0 1.0 1.0 2.5 85 chrX 9709681 intergenic not near genes chrX 9709724 intergenic not near genes chrX 9709766 intergenic not near genes chrX_5_9705001 chrX_9705001 RAL-386 552 chrX 10154291 10154310 chrX 10154367 10154384 4 75 0.0 1.0 0.5 2.7 93 chrX 10154291 intron,intron CR44894 -,CG12645 + chrX 10154338 intron,intron CR44894 -,CG12645 + chrX 10154384 intron,exon CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-386 553 chrX 10367203 10367206 chrX 10367311 10367315 4 109 2.0 3.0 2.5 1.1 112 chrX 10367203 intron CG32679 - chrX 10367259 intron CG32679 - chrX 10367315 intron CG32679 - chrX_4_10365001 chrX_10365001 RAL-386 554 chrX 10694165 10694177 chrX 10694245 10694257 4 80 0.0 2.0 1.0 2.0 92 chrX 10694165 intron X11Lbeta + chrX 10694211 intron X11Lbeta + chrX 10694257 intron X11Lbeta + chrX_4_10690001 chrX_10690001 RAL-386 555 chrX 10694178 10694185 chrX 10694230 10694256 4 69 0.0 2.0 1.0 2.0 78 chrX 10694178 intron X11Lbeta + chrX 10694217 intron X11Lbeta + chrX 10694256 intron X11Lbeta + chrX_4_10690001 chrX_10690001 RAL-386 556 chrX 10772687 10772697 chrX 10772763 10772780 Tirant 5 80 2.5 2.0 2.2 1.6 93 chrX 10772687 intron CG15211 + chrX 10772734 intron CG15211 + chrX 10772780 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-386 557 chrX 11554858 11554891 chrX 11555275 11555307 4 417 1.5 3.5 2.5 1.1 449 chrX 11554858 3` UTR Drak + chrX 11555082 3` UTR CG1572 - chrX 11555307 3` UTR CG1572 - chrX_4_11555001 chrX_11555001 RAL-386 558 chrX 13172351 13172378 chrX 13172424 13172437 6 71 0.5 0.0 0.2 5.0 86 chrX 13172351 exon CG34411 - chrX 13172394 intron CG34411 - chrX 13172437 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-386 559 chrX 13429480 13429493 chrX 13430628 13430641 jockey 4 1148 0.0 1.5 0.8 2.2 1161 chrX 13429480 intergenic not near genes chrX 13430060 intergenic not near genes chrX 13430641 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-386 560 chrX 13651541 13651548 chrX 13651618 13651627 4 77 1.5 1.0 1.2 1.8 86 chrX 13651541 intron NFAT + chrX 13651584 intron NFAT + chrX 13651627 intron NFAT + chrX_4_13650001 chrX_13650001 RAL-386 561 chrX 13937984 13938006 chrX 13941255 13941277 I-element 4 3270 2.0 0.5 1.2 1.8 3293 chrX 13937984 intron mamo - chrX 13939630 intron mamo - chrX 13941277 intron mamo - chrX_4_13935001 chrX_13935001 RAL-386 562 chrX 14131504 14131519 chrX 14131580 14131592 5 74 3.0 5.5 4.2 1.0 88 chrX 14131504 intergenic not near genes chrX 14131548 intergenic not near genes chrX 14131592 intergenic not near genes chrX_5_14130001 chrX_14130001 RAL-386 563 chrX 14333302 14333318 chrX 14333374 14333398 4 73 1.0 3.0 2.0 1.3 96 chrX 14333302 intron dpr8 + chrX 14333350 intron dpr8 + chrX 14333398 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-386 564 chrX 14359544 14359563 chrX 14359972 14359996 6 429 0.5 0.0 0.2 5.0 452 chrX 14359544 intron dpr8 + chrX 14359770 intron dpr8 + chrX 14359996 intron dpr8 + chrX_6_14355001 chrX_14355001 RAL-386 565 chrX 14416307 14416332 chrX 14421073 14421099 F-element 4 4766 0.5 0.0 0.2 3.3 4792 chrX 14416307 intron dpr8 + chrX 14418703 intron dpr8 + chrX 14421099 intron dpr8 + chrX_4_14415001 chrX_14415001 RAL-386 566 chrX 14484968 14484995 chrX 14485057 14485083 5 89 0.0 1.5 0.8 2.8 115 chrX 14484968 intergenic not near genes chrX 14485026 intergenic not near genes chrX 14485083 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-386 567 chrX 14716855 14716872 chrX 14717181 14717213 10 336 3.0 1.5 2.2 3.1 358 chrX 14716855 intron NetB - chrX 14717034 intron NetB - chrX 14717213 intron NetB - chrX_10_14715001 chrX_14715001 RAL-386 568 chrX 14767957 14767971 chrX 14768036 14768051 4 80 0.5 0.0 0.2 3.3 94 chrX 14767957 intergenic not near genes chrX 14768004 intergenic not near genes chrX 14768051 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-386 569 chrX 14921960 14921985 chrX 14922334 14922363 8 376 3.0 1.5 2.2 2.5 403 chrX 14921960 intron,intron Flo2 +,CG9503 - chrX 14922162 intron,intron Flo2 +,CG9503 - chrX 14922363 intron,intron Flo2 +,CG9503 - chrX_8_14920001 chrX_14920001 RAL-386 570 chrX 15519800 15519813 chrX 15519877 15519889 5 77 0.5 1.0 0.8 2.8 89 chrX 15519800 intron Ac13E - chrX 15519844 intron Ac13E - chrX 15519889 intron Ac13E - chrX_5_15515001 chrX_15515001 RAL-386 571 chrX 15589432 15589459 chrX 15589611 15589637 4 179 2.0 2.5 2.2 1.2 205 chrX 15589432 intron CG9220 - chrX 15589534 intron CG9220 - chrX 15589637 exon CG9220 - chrX_4_15585001 chrX_15585001 RAL-386 572 chrX 16307403 16307439 chrX 16310751 16310784 10 3349 24.5 23.0 23.8 0.4 3381 chrX 16307403 exon,5` UTR CG9914 -,CR45485 + chrX 16309094 intergenic CR45485 +,CG9914 - chrX 16310784 exon CG9915 - chrX_10_16305001 chrX_16305001 RAL-386 573 chrX 16492650 16492666 chrX 16498224 16498243 mdg3 4 5576 1.0 0.5 0.8 2.2 5593 chrX 16492650 intron para - chrX 16495446 intron para - chrX 16498243 intron para - chrX_4_16495001 chrX_16495001 RAL-386 574 chrX 17556944 17556976 chrX 17557442 17557444 mdg1 5 492 2.0 3.5 2.8 1.3 500 chrX 17556944 intron CG43658 - chrX 17557194 intron CG43658 - chrX 17557444 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-386 575 chrX 17680890 17680919 chrX 17680967 17680996 8 76 2.0 2.0 2.0 2.7 106 chrX 17680890 intron chas - chrX 17680943 intron chas - chrX 17680996 intron chas - chrX_8_17680001 chrX_17680001 RAL-386 576 chrX 18337432 18337454 chrX 18337531 18337554 4 100 2.0 0.5 1.2 1.8 122 chrX 18337432 intron CG6123 - chrX 18337493 intron CG6123 - chrX 18337554 intron CG6123 - chrX_4_18335001 chrX_18335001 RAL-386 577 chrX 18429507 18429527 chrX 18434803 18434838 Transpac 4 5306 1.5 1.5 1.5 1.6 5331 chrX 18429507 intergenic not near genes chrX 18432172 intergenic not near genes chrX 18434838 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-386 578 chrX 18558778 18558803 chrX 18558860 18558885 4 82 2.0 0.0 1.0 2.0 107 chrX 18558778 intron Bx + chrX 18558832 intron Bx + chrX 18558885 intron Bx + chrX_4_18555001 chrX_18555001 RAL-386 579 chrX 19528434 19528465 chrX 19528520 19528554 7 88 2.0 1.0 1.5 2.8 120 chrX 19528434 intron CoRest + chrX 19528494 intron CoRest + chrX 19528554 intron CoRest + chrX_7_19525001 chrX_19525001 RAL-386 580 chrX 19593949 19593975 chrX 19594033 19594060 5 84 4.0 1.5 2.8 1.3 111 chrX 19593949 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594060 intron CG14205 + chrX_5_19590001 chrX_19590001 RAL-386 581 chrX 19817480 19817505 chrX 19817575 19817602 4 96 1.0 0.5 0.8 2.2 122 chrX 19817480 intergenic not near genes chrX 19817541 intergenic not near genes chrX 19817602 intergenic not near genes chrX_4_19815001 chrX_19815001 RAL-386 582 chrX 20105211 20105225 chrX 20105314 20105332 6 106 18.0 13.0 15.5 0.4 121 chrX 20105211 intergenic not near genes chrX 20105272 intergenic not near genes chrX 20105332 intergenic not near genes chrX_6_20105001 chrX_20105001 RAL-386 583 chrX 20257766 20257776 chrX 20257846 20257861 4 84 1.5 0.5 1.0 2.0 95 chrX 20257766 intergenic not near genes chrX 20257814 intergenic not near genes chrX 20257861 intergenic not near genes chrX_4_20255001 chrX_20255001 RAL-386 584 chrX 20426178 20426201 chrX 20428374 20428404 4 2200 18.0 23.0 20.5 0.2 2226 chrX 20426178 exon cactin + chrX 20427291 intergenic CG11710 -,CG15456 - chrX 20428404 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-386 585 chrX 20485596 20485625 chrX 20485821 20485851 6 226 1.0 1.0 1.0 3.0 255 chrX 20485596 intron RhoGAP19D - chrX 20485724 intron RhoGAP19D - chrX 20485851 intron RhoGAP19D - chrX_6_20485001 chrX_20485001 RAL-386 586 chrX 20710413 20710432 chrX 20710490 20710508 6 76 0.0 0.0 0.0 6.0 95 chrX 20710413 intergenic not near genes chrX 20710460 intergenic not near genes chrX 20710508 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-386 587 chrX 21040460 21040465 chrX 21045381 21045408 7 4925 15.5 16.0 15.8 0.4 4948 chrX 21040460 3` UTR,5` UTR Ntf-2 +,CG15449 - chrX 21042934 intron Mgstl + chrX 21045408 intron Cbs + chrX_7_21040001 chrX_21040001 RAL-386 588 chrX 21136633 21136661 chrX 21136722 21136750 6 90 1.0 1.5 1.2 2.7 117 chrX 21136633 exon CG34120 + chrX 21136692 intron CG34120 + chrX 21136750 intron CG34120 + chrX_6_21135001 chrX_21135001 RAL-386 589 chrX 22824238 22824446 chrX 22824363 22824564 4 125 0.0 0.0 0.0 4.0 326 chrX 22824238 intergenic fog - chrX 22824401 3` UTR fog - chrX 22824564 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-386 590 chrX 22996328 22996340 chrX 23003562 23003570 roo 4 7232 0.0 0.5 0.2 3.3 7242 chrX 22996328 intron,intron stnA -,stnB - chrX 22999949 intron,intron stnA -,stnB - chrX 23003570 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-386