SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47451	47487	chr2L	52576	52612	jockey	5	5125	4.0	4.0	4.0	1.0	5161	chr2L	47451	intron	Cda5 -	chr2L	50032	intron	Cda5 -	chr2L	52612	intron	Cda5 -	chr2L_5_50001	chr2L_50001	RAL-385
9	chr2L	976858	976886	chr2L	984513	984542	roo	4	7656	3.0	1.5	2.2	1.2	7684	chr2L	976858	intergenic	not near genes	chr2L	980700	intergenic	not near genes	chr2L	984542	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-385
14	chr2L	1220111	1220159	chr2L	1227597	1227645	blood	4	7485	2.5	2.5	2.5	1.1	7534	chr2L	1220111	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227645	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-385
18	chr2L	1570678	1570708	chr2L	1573570	1573600	F-element	4	2890	2.0	1.5	1.8	1.4	2922	chr2L	1570678	intron	haf +	chr2L	1572139	intron	haf +	chr2L	1573600	intron	haf +	chr2L_4_1570001	chr2L_1570001	RAL-385
19	chr2L	1678960	1678998	chr2L	1686445	1686481	blood	9	7480	2.0	2.5	2.2	2.8	7521	chr2L	1678960	intron	chinmo +	chr2L	1682720	intron	chinmo +	chr2L	1686481	intron	chinmo +	chr2L_9_1680001	chr2L_1680001	RAL-385
29	chr2L	2565534	2565562	chr2L	2571627	2571655	297	6	6092	1.0	4.5	2.8	1.6	6121	chr2L	2565534	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571655	exon	Cyp309a2 -	chr2L_6_2565001	chr2L_2565001	RAL-385
31	chr2L	2772592	2772621	chr2L	2779194	2779223	297	4	6602	2.5	4.5	3.5	0.9	6631	chr2L	2772592	3` UTR	Syt1 -	chr2L	2775908	intron	Syt1 -	chr2L	2779223	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	RAL-385
34	chr2L	3073014	3073058	chr2L	3078237	3078240	copia	8	5218	2.5	3.0	2.8	2.1	5226	chr2L	3073014	intron	toc -	chr2L	3075627	intron	toc -	chr2L	3078240	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-385
37	chr2L	3202720	3202771	chr2L	3210169	3210203	mdg1	5	7446	1.0	1.0	1.0	2.5	7483	chr2L	3202720	intergenic	not near genes	chr2L	3206462	intergenic	not near genes	chr2L	3210203	intergenic	CR45336 +	chr2L_5_3205001	chr2L_3205001	RAL-385
38	chr2L	3251473	3251500	chr2L	3259084	3259116	springer	5	7611	1.5	2.0	1.8	1.8	7643	chr2L	3251473	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259116	intergenic	not near genes	chr2L_5_3255001	chr2L_3255001	RAL-385
46	chr2L	4601688	4601724	chr2L	4609147	4609155	mdg1	4	7448	3.0	2.0	2.5	1.1	7467	chr2L	4601688	intron	dp -	chr2L	4605422	intron	dp -	chr2L	4609155	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-385
47	chr2L	4661829	4661849	chr2L	4669429	4669449	opus	4	7598	1.5	4.5	3.0	1.0	7620	chr2L	4661829	intergenic	not near genes	chr2L	4665639	intergenic	not near genes	chr2L	4669449	intergenic	not near genes	chr2L_4_4665001	chr2L_4665001	RAL-385
49	chr2L	4918148	4918198	chr2L	4923241	4923329	jockey	4	5110	4.0	0.0	2.0	1.3	5181	chr2L	4918148	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923329	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-385
60	chr2L	5827708	5827739	chr2L	5836736	5836751	roo	6	9021	0.5	1.5	1.0	3.0	9043	chr2L	5827708	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836751	intron	TrissinR +	chr2L_6_5830001	chr2L_5830001	RAL-385
66	chr2L	6426838	6426886	chr2L	6445118	6445143	roo	11	18271	3.5	1.0	2.2	3.4	18305	chr2L	6426838	3` UTR	CG9527 -	chr2L	6435990	intron	CG9527 -	chr2L	6445143	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	RAL-385
78	chr2L	7959022	7959056	chr2L	7960453	7960454	pogo	7	1422	5.0	2.5	3.8	1.5	1432	chr2L	7959022	intron	Snoo -	chr2L	7959738	intron	Snoo -	chr2L	7960454	intron	Snoo -	chr2L_7_7955001	chr2L_7955001	RAL-385
79	chr2L	7977071	7977113	chr2L	7984066	7984088	297	5	6987	0.5	0.5	0.5	3.3	7017	chr2L	7977071	intron	Snoo -	chr2L	7980580	intron	Snoo -	chr2L	7984088	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-385
81	chr2L	8013601	8013613	chr2L	8018825	8018837	copia	4	5224	4.0	0.0	2.0	1.3	5236	chr2L	8013601	intron	Tg +	chr2L	8016219	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-385
82	chr2L	8018815	8018835	chr2L	8023604	8023638	Doc	8	4802	0.0	2.5	1.2	3.6	4823	chr2L	8018815	intron	Tg +	chr2L	8021226	intron	Tg +	chr2L	8023638	intron	Tg +	chr2L_8_8020001	chr2L_8020001	RAL-385
86	chr2L	8452427	8452444	chr2L	8461618	8461634	roo	4	9190	1.0	1.5	1.2	1.8	9207	chr2L	8452427	intron	fu12 -	chr2L	8457030	intron	fu12 -	chr2L	8461634	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-385
93	chr2L	8723099	8723128	chr2L	8731496	8731516	Tirant	4	8395	1.0	0.5	0.8	2.2	8417	chr2L	8723099	intron	raw -	chr2L	8727308	intron	raw -	chr2L	8731516	intron	raw -	chr2L_4_8725001	chr2L_8725001	RAL-385
97	chr2L	9000282	9000306	chr2L	9007795	9007816	roo	4	7516	2.5	4.5	3.5	0.9	7534	chr2L	9000282	intergenic	Try29F +	chr2L	9004049	intergenic	not near genes	chr2L	9007816	intergenic	not near genes	chr2L_4_9000001	chr2L_9000001	RAL-385
98	chr2L	9217979	9217994	chr2L	9222786	9222797	Doc	5	4805	1.5	2.0	1.8	1.8	4818	chr2L	9217979	intron	tai +	chr2L	9220388	intron	tai +	chr2L	9222797	intron	tai +	chr2L_5_9220001	chr2L_9220001	RAL-385
106	chr2L	9393480	9393529	chr2L	9396467	9396516	jockey	10	2981	2.0	4.5	3.2	2.4	3036	chr2L	9393480	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396516	intron	Shawl -	chr2L_10_9390001	chr2L_9390001	RAL-385
113	chr2L	9973730	9973756	chr2L	9980843	9980895	HMS-Beagle	5	7127	0.5	1.5	1.0	2.5	7165	chr2L	9973730	intergenic	not near genes	chr2L	9977312	intergenic	not near genes	chr2L	9980895	intergenic	not near genes	chr2L_5_9975001	chr2L_9975001	RAL-385
122	chr2L	10592831	10592865	chr2L	10600512	10600530	opus	4	7678	0.0	3.5	1.8	1.4	7699	chr2L	10592831	intron	Trim9 +	chr2L	10596680	intron	Trim9 +	chr2L	10600530	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-385
132	chr2L	11713486	11713540	chr2L	11720974	11721012	blood	4	7484	0.0	2.0	1.0	2.0	7526	chr2L	11713486	intergenic	not near genes	chr2L	11717249	intergenic	not near genes	chr2L	11721012	intergenic	CR44143 +	chr2L_4_11715001	chr2L_11715001	RAL-385
137	chr2L	12067322	12067356	chr2L	12074394	12074428	297	11	7070	4.0	2.5	3.2	2.6	7106	chr2L	12067322	intergenic	not near genes	chr2L	12070875	intergenic	not near genes	chr2L	12074428	intergenic	not near genes	chr2L_11_12070001	chr2L_12070001	RAL-385
145	chr2L	12739166	12739198	chr2L	12743955	12743999	Doc	8	4793	1.5	1.0	1.2	3.6	4833	chr2L	12739166	exon	MRP +	chr2L	12741582	intron	MRP +	chr2L	12743999	exon	MRP +	chr2L_8_12740001	chr2L_12740001	RAL-385
148	chr2L	12791591	12791630	chr2L	12795285	12795325	F-element	7	3682	1.0	3.5	2.2	2.2	3734	chr2L	12791591	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795325	intergenic	not near genes	chr2L_7_12790001	chr2L_12790001	RAL-385
152	chr2L	12933845	12933878	chr2L	12941316	12941353	blood	4	7476	1.0	0.5	0.8	2.2	7508	chr2L	12933845	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941353	intergenic	not near genes	chr2L_4_12935001	chr2L_12935001	RAL-385
156	chr2L	13405629	13405681	chr2L	13410445	13410451	Doc	6	4802	2.5	4.5	3.5	1.3	4822	chr2L	13405629	exon	CG7110 +	chr2L	13408040	intron	CG7110 +	chr2L	13410451	intron	CG7110 +	chr2L_6_13405001	chr2L_13405001	RAL-385
157	chr2L	13522111	13522150	chr2L	13527649	13527688	Transpac	11	5538	2.0	2.5	2.2	3.4	5577	chr2L	13522111	intron	B4 -	chr2L	13524900	intron	B4 -	chr2L	13527688	intron	B4 -	chr2L_11_13520001	chr2L_13520001	RAL-385
160	chr2L	13853078	13853118	chr2L	13862238	13862285	roo	4	9167	2.0	0.0	1.0	2.0	9207	chr2L	13853078	intron	CenG1A +	chr2L	13857682	intron	CenG1A +	chr2L	13862285	intron	CenG1A +	chr2L_4_13855001	chr2L_13855001	RAL-385
169	chr2L	14984377	14984398	chr2L	14991983	14992016	opus	6	7611	2.0	2.0	2.0	2.0	7639	chr2L	14984377	intron	mol -	chr2L	14988196	intron	mol -	chr2L	14992016	intron	mol -	chr2L_6_14985001	chr2L_14985001	RAL-385
177	chr2L	15446040	15446081	chr2L	15453518	15453570	blood	6	7487	2.5	1.0	1.8	2.1	7530	chr2L	15446040	intergenic	not near genes	chr2L	15449805	intergenic	not near genes	chr2L	15453570	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	RAL-385
180	chr2L	15586390	15586429	chr2L	15593462	15593500	297	4	7072	4.5	1.0	2.8	1.1	7110	chr2L	15586390	intergenic	not near genes	chr2L	15589945	intergenic	not near genes	chr2L	15593500	intergenic	not near genes	chr2L_4_15585001	chr2L_15585001	RAL-385
184	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	4.5	14.5	9.5	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-385
185	chr2L	16153718	16153768	chr2L	16160792	16160842	297	8	7072	1.0	2.5	1.8	2.9	7124	chr2L	16153718	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160842	intergenic	not near genes	chr2L_8_16155001	chr2L_16155001	RAL-385
190	chr2L	16511966	16511994	chr2L	16519113	16519141	HMS-Beagle	5	7143	3.5	4.5	4.0	1.0	7175	chr2L	16511966	intron	CG5953 -	chr2L	16515554	intron	CG5953 -	chr2L	16519141	intron	CG5953 -	chr2L_5_16515001	chr2L_16515001	RAL-385
194	chr2L	16958095	16958140	chr2L	16962903	16962907	Doc	7	4802	1.0	2.5	1.8	2.5	4812	chr2L	16958095	intergenic	not near genes	chr2L	16960501	intergenic	not near genes	chr2L	16962907	intergenic	not near genes	chr2L_7_16960001	chr2L_16960001	RAL-385
198	chr2L	17167554	17167580	chr2L	17167810	17167841	pogo	4	256	0.5	1.0	0.8	2.2	287	chr2L	17167554	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167841	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	RAL-385
200	chr2L	17199146	17199178	chr2L	17200628	17200665	hobo	6	1486	1.0	1.0	1.0	3.0	1519	chr2L	17199146	intron	beat-IIIc -	chr2L	17199906	intron	beat-IIIc -	chr2L	17200665	intron	beat-IIIc -	chr2L_6_17195001	chr2L_17195001	RAL-385
207	chr2L	17951944	17951965	chr2L	17953420	17953452	hobo	4	1484	3.0	1.5	2.2	1.2	1508	chr2L	17951944	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953452	intergenic	not near genes	chr2L_4_17950001	chr2L_17950001	RAL-385
229	chr2L	19620092	19620129	chr2L	19621080	19621110	jockey	7	999	1.0	1.5	1.2	3.2	1018	chr2L	19620092	intron	Lar +	chr2L	19620601	intron	Lar +	chr2L	19621110	intron	Lar +	chr2L_7_19620001	chr2L_19620001	RAL-385
230	chr2L	19652566	19652597	chr2L	19674005	19674048	opus	10	21450	5.0	3.0	4.0	2.0	21482	chr2L	19652566	intron	Lar +	chr2L	19663307	intron	Lar +	chr2L	19674048	intron	Lar +	chr2L_10_19660001	chr2L_19660001	RAL-385
232	chr2L	19703523	19703564	chr2L	19712679	19712708	roo	10	9153	5.0	1.0	3.0	2.5	9185	chr2L	19703523	intron	Lar +	chr2L	19708116	intron	Lar +	chr2L	19712708	intron	Lar +	chr2L_10_19705001	chr2L_19705001	RAL-385
234	chr2L	19762821	19762835	chr2L	19763056	19763097	pogo	4	249	0.5	1.5	1.0	2.0	276	chr2L	19762821	intron	fbp -	chr2L	19762959	intron	fbp -	chr2L	19763097	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-385
244	chr2L	20272100	20272139	chr2L	20282831	20282855	copia	9	10724	3.0	3.0	3.0	2.2	10755	chr2L	20272100	intergenic	not near genes	chr2L	20277478	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-385
247	chr2L	20303163	20303181	chr2L	20310635	20310647	blood	4	7478	0.5	4.5	2.5	1.1	7484	chr2L	20303163	intergenic	not near genes	chr2L	20306905	intergenic	not near genes	chr2L	20310647	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-385
249	chr2L	20372203	20372223	chr2L	20372473	20372474	pogo	5	263	3.0	2.0	2.5	1.4	271	chr2L	20372203	intergenic	Ugt37a1 -	chr2L	20372338	intergenic	Ugt37a1 -	chr2L	20372474	exon	Ugt37a1 -	chr2L_5_20370001	chr2L_20370001	RAL-385
254	chr2L	20568642	20568681	chr2L	20569052	20569091	X-element	7	406	2.0	0.5	1.2	3.2	449	chr2L	20568642	intron	CR45347 +	chr2L	20568866	intron	CR45347 +	chr2L	20569091	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RAL-385
257	chr2L	20835813	20835827	chr2L	20836549	20836564	Quasimodo	7	736	4.5	5.5	5.0	1.2	751	chr2L	20835813	5` UTR	Oseg5 -	chr2L	20836188	intergenic	Oseg5 -,Spn38F -	chr2L	20836564	intergenic	Spn38F -	chr2L_7_20835001	chr2L_20835001	RAL-385
258	chr2L	21020288	21020310	chr2L	21023950	21023954	NOF	4	3658	1.0	0.0	0.5	2.7	3666	chr2L	21020288	intron	CG42238 -	chr2L	21022121	intron	CG42238 -	chr2L	21023954	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-385
259	chr2L	21041122	21041153	chr2L	21049403	21049412	Tirant	4	8272	2.0	0.5	1.2	1.8	8290	chr2L	21041122	intron	CG42238 -	chr2L	21045267	intron	CG42238 -	chr2L	21049412	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-385
261	chr2L	21347538	21347581	chr2L	21355026	21355026	blood	8	7480	0.0	2.5	1.2	3.6	7488	chr2L	21347538	intron	Tsp39D +	chr2L	21351282	intron	Tsp39D +	chr2L	21355026	intron	Tsp39D +	chr2L_8_21350001	chr2L_21350001	RAL-385
264	chr2L	21653185	21653222	chr2L	21656495	21656546	invader4	7	3322	0.5	2.0	1.2	3.2	3361	chr2L	21653185	intergenic	not near genes	chr2L	21654866	intergenic	not near genes	chr2L	21656546	intergenic	not near genes	chr2L_7_21650001	chr2L_21650001	RAL-385
266	chr2L	21691809	21691846	chr2L	21698298	21698305	Burdock	8	6483	4.0	0.5	2.2	2.5	6496	chr2L	21691809	intron	CG31619 +	chr2L	21695057	intron	CG31619 +	chr2L	21698305	intron	CG31619 +	chr2L_8_21695001	chr2L_21695001	RAL-385
275	chr2L	22581982	22582002	chr2L	22583760	22583811	S-element	6	1804	0.5	1.5	1.0	3.0	1829	chr2L	22581982	intron	CG17494 +	chr2L	22582896	intron	CG17494 +	chr2L	22583811	intron	CG17494 +	chr2L_6_22580001	chr2L_22580001	RAL-385
276	chr2L	22776423	22776433	chr2L	22778232	22778242	S-element	4	1809	4.5	4.5	4.5	0.7	1819	chr2L	22776423	intergenic	not near genes	chr2L	22777332	intergenic	not near genes	chr2L	22778242	intergenic	not near genes	chr2L_4_22775001	chr2L_22775001	RAL-385
285	chr2R	5869258	5869301	chr2R	5874353	5874390	flea	5	5081	3.0	0.5	1.8	1.8	5132	chr2R	5869258	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874390	intergenic	not near genes	chr2R_5_5870001	chr2R_5870001	RAL-385
291	chr2R	6579786	6579805	chr2R	6584893	6584901	flea	6	5103	0.5	1.0	0.8	3.3	5115	chr2R	6579786	intron	jing +	chr2R	6582344	intron	jing +	chr2R	6584901	intron	jing +	chr2R_6_6580001	chr2R_6580001	RAL-385
292	chr2R	6664169	6664210	chr2R	6665975	6666016	S-element	9	1806	3.0	3.0	3.0	2.2	1847	chr2R	6664169	intron,3` UTR	Adf1 +,CR45128 -	chr2R	6665092	intron	Adf1 +	chr2R	6666016	intron	Adf1 +	chr2R_9_6665001	chr2R_6665001	RAL-385
300	chr2R	7196552	7196586	chr2R	7201347	7201381	F-element	8	4794	5.5	8.0	6.8	1.0	4829	chr2R	7196552	intron	pk +	chr2R	7198966	intron	pk +	chr2R	7201381	intron	pk +	chr2R_8_7195001	chr2R_7195001	RAL-385
301	chr2R	7196591	7196597	chr2R	7201344	7201392	F-element	5	4785	3.5	8.5	6.0	0.7	4801	chr2R	7196591	intron	pk +	chr2R	7198992	intron	pk +	chr2R	7201392	intron	pk +	chr2R_5_7195001	chr2R_7195001	RAL-385
302	chr2R	7209872	7209873	chr2R	7217643	7217654	roo	4	7778	0.0	5.5	2.8	1.1	7782	chr2R	7209872	intron	pk +	chr2R	7213763	intron	pk +	chr2R	7217654	intron	pk +	chr2R_4_7210001	chr2R_7210001	RAL-385
303	chr2R	7235807	7235852	chr2R	7240919	7240929	jockey	6	5106	2.0	1.0	1.5	2.4	5122	chr2R	7235807	intergenic	not near genes	chr2R	7238368	intergenic	not near genes	chr2R	7240929	intergenic	not near genes	chr2R_6_7235001	chr2R_7235001	RAL-385
306	chr2R	7434878	7434919	chr2R	7439197	7439240	Juan	10	4320	7.5	3.0	5.2	1.6	4362	chr2R	7434878	intergenic	so +	chr2R	7437059	intergenic	not near genes	chr2R	7439240	intergenic	not near genes	chr2R_10_7435001	chr2R_7435001	RAL-385
308	chr2R	7608393	7608444	chr2R	7613606	7613637	I-element	9	5200	5.5	0.5	3.0	2.2	5244	chr2R	7608393	intron	CG1358 -	chr2R	7611015	intron	CG1358 -	chr2R	7613637	intron	CG1358 -	chr2R_9_7610001	chr2R_7610001	RAL-385
311	chr2R	7815668	7815687	chr2R	7822139	7822176	Burdock	9	6483	8.0	1.5	4.8	1.6	6508	chr2R	7815668	intergenic	CG1882 +	chr2R	7818922	intergenic	not near genes	chr2R	7822176	3` UTR	cathD -	chr2R_9_7815001	chr2R_7815001	RAL-385
312	chr2R	7869182	7869209	chr2R	7873978	7873985	Doc	5	4793	5.0	1.0	3.0	1.2	4803	chr2R	7869182	intron	Dgk -	chr2R	7871584	intron	Dgk -	chr2R	7873985	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-385
320	chr2R	8160937	8160944	chr2R	8161027	8161052	1360	6	106	0.5	6.5	3.5	1.3	115	chr2R	8160937	intron	CG8708 -	chr2R	8160994	intron	CG8708 -	chr2R	8161052	intron	CG8708 -	chr2R_6_8160001	chr2R_8160001	RAL-385
324	chr2R	8330856	8330895	chr2R	8331347	8331372	roo	9	499	1.0	2.0	1.5	3.6	516	chr2R	8330856	intron	pdm3 +	chr2R	8331114	intron	pdm3 +	chr2R	8331372	intron	pdm3 +	chr2R_9_8330001	chr2R_8330001	RAL-385
334	chr2R	9151309	9151327	chr2R	9157779	9157817	Burdock	8	6488	3.5	6.0	4.8	1.4	6508	chr2R	9151309	3` UTR	CG30345 +	chr2R	9154563	intergenic	not near genes	chr2R	9157817	intergenic	CG8008 -	chr2R_8_9150001	chr2R_9150001	RAL-385
339	chr2R	9480075	9480104	chr2R	9490625	9490655	roo	6	10549	4.5	5.5	5.0	1.0	10580	chr2R	9480075	intergenic	not near genes	chr2R	9485365	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_6_9485001	chr2R_9485001	RAL-385
343	chr2R	10194903	10194903	chr2R	11132216	11132216	mdg1	4	937313	12.5	8.5	10.5	0.3	937313	chr2R	10194903	intergenic	not near genes	chr2R	10663560	intergenic	not near genes	chr2R	11132216	intergenic	not near genes	chr2R_4_10660001	chr2R_10660001	RAL-385
359	chr2R	11297626	11297637	chr2R	11301970	11301974	flea	4	4342	1.0	0.0	0.5	2.7	4348	chr2R	11297626	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11301974	5` UTR	CG7741 +	chr2R_4_11295001	chr2R_11295001	RAL-385
360	chr2R	11472627	11472669	chr2R	11473844	11473884	pogo	5	1216	3.0	2.5	2.8	1.3	1257	chr2R	11472627	intergenic	not near genes	chr2R	11473256	intergenic	not near genes	chr2R	11473884	intergenic	not near genes	chr2R_5_11470001	chr2R_11470001	RAL-385
369	chr2R	12707534	12707546	chr2R	12715919	12715932	roo	4	8386	0.5	3.5	2.0	1.3	8398	chr2R	12707534	intron	CG42663 +	chr2R	12711733	intron	CG42663 +	chr2R	12715932	intron	CG42663 +	chr2R_4_12710001	chr2R_12710001	RAL-385
372	chr2R	13136836	13136854	chr2R	13141654	13141660	Doc	5	4813	3.0	2.0	2.5	1.4	4824	chr2R	13136836	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141660	intron	Cap-G +	chr2R_5_13135001	chr2R_13135001	RAL-385
379	chr2R	13728110	13728134	chr2R	13735791	13735805	opus	4	7678	5.0	3.0	4.0	0.8	7695	chr2R	13728110	intron	fas +	chr2R	13731958	intron	fas +	chr2R	13735805	intron	fas +	chr2R_4_13730001	chr2R_13730001	RAL-385
390	chr2R	14497381	14497419	chr2R	14498564	14498605	1360	5	1174	0.0	4.0	2.0	1.7	1224	chr2R	14497381	3` UTR	Cpsf160 -	chr2R	14497993	intron	Cpsf160 -	chr2R	14498605	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	RAL-385
393	chr2R	14889187	14889226	chr2R	14897815	14897819	Max-element	5	8618	5.5	0.0	2.8	1.3	8632	chr2R	14889187	intergenic	Cyp6a8 -	chr2R	14893503	intergenic	not near genes	chr2R	14897819	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-385
400	chr2R	15004718	15004741	chr2R	15005058	15005080	jockey	8	344	3.5	1.5	2.5	2.3	362	chr2R	15004718	intergenic	not near genes	chr2R	15004899	intergenic	not near genes	chr2R	15005080	intergenic	not near genes	chr2R_8_15000001	chr2R_15000001	RAL-385
402	chr2R	15084957	15085009	chr2R	15092026	15092051	297	8	7061	1.5	4.0	2.8	2.1	7094	chr2R	15084957	intergenic	not near genes	chr2R	15088504	intergenic	not near genes	chr2R	15092051	5` UTR	CR44457 +	chr2R_8_15085001	chr2R_15085001	RAL-385
413	chr2R	16539619	16539662	chr2R	16544848	16544891	copia	9	5229	3.0	2.5	2.8	2.4	5272	chr2R	16539619	intergenic	not near genes	chr2R	16542255	intergenic	not near genes	chr2R	16544891	intergenic	not near genes	chr2R_9_16540001	chr2R_16540001	RAL-385
426	chr2R	17782351	17782383	chr2R	17783574	17783606	pogo	8	1223	2.5	4.0	3.2	1.9	1255	chr2R	17782351	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783606	intergenic	mir-31a -	chr2R_8_17780001	chr2R_17780001	RAL-385
431	chr2R	18045669	18045696	chr2R	18046041	18046068	jockey	5	372	3.0	7.5	5.2	0.8	399	chr2R	18045669	intergenic	not near genes	chr2R	18045868	intergenic	not near genes	chr2R	18046068	intergenic	CG5767 -	chr2R_5_18045001	chr2R_18045001	RAL-385
433	chr2R	18111661	18111688	chr2R	18115549	18115551	F-element	6	3883	2.0	3.5	2.8	1.6	3890	chr2R	18111661	intergenic	not near genes	chr2R	18113606	intergenic	not near genes	chr2R	18115551	intergenic	not near genes	chr2R_6_18110001	chr2R_18110001	RAL-385
438	chr2R	18358374	18358413	chr2R	18372606	18372631	roo	10	14228	3.5	3.5	3.5	2.2	14257	chr2R	18358374	intergenic	not near genes	chr2R	18365502	intergenic	not near genes	chr2R	18372631	intergenic	not near genes	chr2R_10_18365001	chr2R_18365001	RAL-385
440	chr2R	18590887	18590897	chr2R	18600025	18600054	roo	5	9152	1.5	1.5	1.5	2.0	9167	chr2R	18590887	intron	GEFmeso -	chr2R	18595470	intron	GEFmeso -	chr2R	18600054	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-385
451	chr2R	19776589	19776612	chr2R	19779929	19779955	jockey	4	3342	1.0	3.5	2.2	1.2	3366	chr2R	19776589	intergenic	not near genes	chr2R	19778272	intergenic	not near genes	chr2R	19779955	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	RAL-385
452	chr2R	19776618	19776627	chr2R	19779927	19779960	jockey	6	3334	1.0	2.5	1.8	2.1	3342	chr2R	19776618	intergenic	not near genes	chr2R	19778289	intergenic	not near genes	chr2R	19779960	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-385
458	chr2R	20783318	20783330	chr2R	20788095	20788122	F-element	4	4781	1.0	1.5	1.2	1.8	4804	chr2R	20783318	intergenic	not near genes	chr2R	20785720	intergenic	not near genes	chr2R	20788122	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-385
468	chr2R	21753066	21753111	chr2R	21753567	21753615	roo	5	497	1.0	0.5	0.8	2.8	549	chr2R	21753066	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753615	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-385
471	chr2R	22349702	22349721	chr2R	22351496	22351525	jockey	4	1801	1.5	1.0	1.2	1.8	1823	chr2R	22349702	intron	Liprin-gamma -	chr2R	22350614	intron	Liprin-gamma -	chr2R	22351525	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-385
472	chr2R	22465315	22465352	chr2R	22465518	22465537	BS	10	212	4.0	4.0	4.0	2.0	222	chr2R	22465315	intron	CG10384 +	chr2R	22465426	intron	CG10384 +	chr2R	22465537	intron	CG10384 +	chr2R_10_22465001	chr2R_22465001	RAL-385
474	chr2R	22774949	22774977	chr2R	22775388	22775395	jockey	4	428	4.5	2.5	3.5	0.9	446	chr2R	22774949	intron	CG42260 -	chr2R	22775172	intron	CG42260 -	chr2R	22775395	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-385
484	chr2R	24177222	24177269	chr2R	24184727	24184773	412	7	7503	1.0	4.0	2.5	2.0	7551	chr2R	24177222	3` UTR	Nop60B +	chr2R	24180998	intron	Nop60B +	chr2R	24184773	3` UTR	Nop60B +	chr2R_7_24180001	chr2R_24180001	RAL-385
485	chr2R	24353414	24353455	chr2R	24361795	24361825	roo	7	8378	4.5	1.0	2.8	1.8	8411	chr2R	24353414	intron,intron	bs +,CR44811 -	chr2R	24357620	intron,intron	bs +,CR44811 -	chr2R	24361825	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-385
488	chr2R	24727905	24727915	chr2R	24735414	24735433	mdg1	4	7520	0.0	5.0	2.5	1.1	7528	chr2R	24727905	intron	Mid1 -	chr2R	24731669	intron	Mid1 -	chr2R	24735433	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-385
493	chr2R	25141642	25141682	chr2R	25159338	25159392	roo	5	17704	2.0	1.5	1.8	1.8	17750	chr2R	25141642	intergenic	not near genes	chr2R	25150517	intergenic	not near genes	chr2R	25159392	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-385
496	chr3L	110192	110238	chr3L	119379	119410	roo	11	9183	1.0	2.5	1.8	3.9	9218	chr3L	110192	intergenic	not near genes	chr3L	114801	intergenic	not near genes	chr3L	119410	intergenic	not near genes	chr3L_11_110001	chr3L_110001	RAL-385
498	chr3L	402676	402717	chr3L	409749	409784	297	8	7066	2.0	4.0	3.0	2.0	7108	chr3L	402676	intergenic	not near genes	chr3L	406230	intergenic	not near genes	chr3L	409784	intergenic	not near genes	chr3L_8_405001	chr3L_405001	RAL-385
505	chr3L	925180	925208	chr3L	932606	932632	mdg1	4	7428	2.5	3.0	2.8	1.1	7452	chr3L	925180	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932632	intron	Glut1 +	chr3L_4_925001	chr3L_925001	RAL-385
507	chr3L	939762	939778	chr3L	940903	940919	jockey	4	1137	2.5	2.0	2.2	1.2	1157	chr3L	939762	intron	Glut1 +	chr3L	940340	intron	Glut1 +	chr3L	940919	intron	Glut1 +	chr3L_4_940001	chr3L_940001	RAL-385
508	chr3L	939786	939797	chr3L	940897	940902	jockey	5	1128	2.0	2.0	2.0	1.7	1116	chr3L	939786	intron	Glut1 +	chr3L	940344	intron	Glut1 +	chr3L	940902	intron	Glut1 +	chr3L_5_940001	chr3L_940001	RAL-385
515	chr3L	1154121	1154140	chr3L	1163286	1163297	roo	4	9164	0.5	0.5	0.5	2.7	9176	chr3L	1154121	intron	bab2 -	chr3L	1158709	intron	bab2 -	chr3L	1163297	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-385
518	chr3L	1506001	1506031	chr3L	1513605	1513610	17.6	6	7606	1.5	4.5	3.0	1.5	7609	chr3L	1506001	intron,intron	Psa +,cue -	chr3L	1509806	intron,intron	Psa +,cue -	chr3L	1513610	intron,intron	Psa +,cue -	chr3L_6_1505001	chr3L_1505001	RAL-385
520	chr3L	1740847	1740882	chr3L	1741098	1741136	pogo	5	246	2.0	4.0	3.0	1.2	289	chr3L	1740847	intron	Gk +	chr3L	1740992	intron	Gk +	chr3L	1741136	intron	Gk +	chr3L_5_1740001	chr3L_1740001	RAL-385
522	chr3L	2108232	2108278	chr3L	2113456	2113500	copia	12	5224	3.0	4.0	3.5	2.7	5268	chr3L	2108232	intron	sls -	chr3L	2110866	intron	sls -	chr3L	2113500	intron	sls -	chr3L_12_2110001	chr3L_2110001	RAL-385
549	chr3L	4328733	4328760	chr3L	4336250	4336278	412	4	7518	1.5	1.5	1.5	1.6	7545	chr3L	4328733	intron	Cip4 -	chr3L	4332506	intron	Cip4 -	chr3L	4336278	exon	Cip4 -	chr3L_4_4330001	chr3L_4330001	RAL-385
555	chr3L	5045468	5045486	chr3L	5050241	5050287	Doc	6	4791	1.5	3.0	2.2	1.9	4819	chr3L	5045468	intron	Con -	chr3L	5047878	intron	Con -	chr3L	5050287	intron	Con -	chr3L_6_5045001	chr3L_5045001	RAL-385
563	chr3L	5537707	5537751	chr3L	5538068	5538098	jockey	5	355	2.5	2.0	2.2	1.6	391	chr3L	5537707	intergenic	not near genes	chr3L	5537902	intergenic	not near genes	chr3L	5538098	intergenic	CG10625 -	chr3L_5_5535001	chr3L_5535001	RAL-385
564	chr3L	5910023	5910056	chr3L	5910278	5910317	pogo	6	260	5.5	4.5	5.0	1.0	294	chr3L	5910023	intron	CG13288 +	chr3L	5910170	intron	CG13288 +	chr3L	5910317	intron	CG13288 +	chr3L_6_5910001	chr3L_5910001	RAL-385
565	chr3L	6001673	6001708	chr3L	6004393	6004424	jockey	4	2719	1.0	0.0	0.5	2.7	2751	chr3L	6001673	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004424	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-385
566	chr3L	6040375	6040388	chr3L	6042724	6042764	Doc	8	2369	1.5	0.5	1.0	4.0	2389	chr3L	6040375	intergenic	Jon65Aiv +	chr3L	6041570	intergenic	not near genes	chr3L	6042764	intergenic	not near genes	chr3L_8_6040001	chr3L_6040001	RAL-385
569	chr3L	6220911	6220942	chr3L	6230078	6230114	roo	5	9168	2.5	2.0	2.2	1.6	9203	chr3L	6220911	5` UTR	pncr008:3L +	chr3L	6225512	intergenic	not near genes	chr3L	6230114	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-385
571	chr3L	6335000	6335037	chr3L	6335481	6335528	297	4	488	0.0	0.5	0.2	3.3	528	chr3L	6335000	intron	CG13300 -	chr3L	6335264	intron	CG13300 -	chr3L	6335528	intron	CG13300 -	chr3L_4_6335001	chr3L_6335001	RAL-385
576	chr3L	6887506	6887544	chr3L	6895018	6895056	roo	10	7512	1.5	2.5	2.0	3.3	7550	chr3L	6887506	intergenic	not near genes	chr3L	6891281	intergenic	not near genes	chr3L	6895056	intergenic	not near genes	chr3L_10_6890001	chr3L_6890001	RAL-385
579	chr3L	6994876	6994915	chr3L	6995497	6995546	BS	5	628	0.5	1.0	0.8	2.8	670	chr3L	6994876	intergenic	bin +	chr3L	6995211	intergenic	not near genes	chr3L	6995546	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	RAL-385
582	chr3L	7377296	7377349	chr3L	7380421	7380439	297	8	3119	3.0	1.5	2.2	2.5	3143	chr3L	7377296	intron	SMSr -	chr3L	7378868	intron	SMSr -	chr3L	7380439	intron	SMSr -	chr3L_8_7375001	chr3L_7375001	RAL-385
585	chr3L	7793696	7793744	chr3L	7800768	7800800	297	9	7064	3.0	1.5	2.2	2.8	7104	chr3L	7793696	intron	CG32369 -	chr3L	7797248	intron	CG32369 -	chr3L	7800800	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-385
586	chr3L	7916817	7916847	chr3L	7926003	7926038	roo	8	9189	4.0	4.5	4.2	1.5	9221	chr3L	7916817	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926038	3` UTR	syd -	chr3L_8_7920001	chr3L_7920001	RAL-385
587	chr3L	7985354	7985370	chr3L	7987697	7987718	NOF	4	2346	3.0	2.5	2.8	1.1	2364	chr3L	7985354	intron	nmo +	chr3L	7986536	intron	nmo +	chr3L	7987718	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-385
588	chr3L	7985384	7985398	chr3L	7987692	7987696	NOF	5	2324	1.5	2.0	1.8	1.8	2312	chr3L	7985384	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987696	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-385
594	chr3L	8791280	8791309	chr3L	8796704	8796748	I-element	7	5434	0.5	0.5	0.5	4.7	5468	chr3L	8791280	exon	Fhos +	chr3L	8794014	intron	Fhos +	chr3L	8796748	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	RAL-385
597	chr3L	9076914	9076950	chr3L	9084494	9084510	412	4	7571	3.5	1.0	2.2	1.2	7596	chr3L	9076914	exon	Tequila +	chr3L	9080712	intron	Tequila +	chr3L	9084510	exon	Tequila +	chr3L_4_9080001	chr3L_9080001	RAL-385
598	chr3L	9164703	9164713	chr3L	9166190	9166199	hobo	5	1487	1.5	0.0	0.8	2.8	1496	chr3L	9164703	intron	Rdl -	chr3L	9165451	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-385
599	chr3L	9219259	9219269	chr3L	9219916	9219920	jockey	4	657	2.5	3.0	2.8	1.1	661	chr3L	9219259	intergenic	not near genes	chr3L	9219590	intergenic	not near genes	chr3L	9219920	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-385
600	chr3L	9443510	9443531	chr3L	9445315	9445338	S-element	5	1805	4.0	6.0	5.0	0.8	1828	chr3L	9443510	intron	CG33926 +	chr3L	9444424	intron	CG33926 +	chr3L	9445338	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-385
617	chr3L	11105279	11105308	chr3L	11107010	11107034	X-element	11	1728	4.5	1.5	3.0	2.8	1755	chr3L	11105279	intergenic	not near genes	chr3L	11106156	intergenic	not near genes	chr3L	11107034	exon	CG32073 -	chr3L_11_11105001	chr3L_11105001	RAL-385
622	chr3L	11264445	11264477	chr3L	11271417	11271429	17.6	4	6967	2.0	1.5	1.8	1.4	6984	chr3L	11264445	intergenic	not near genes	chr3L	11267937	intergenic	not near genes	chr3L	11271429	intergenic	not near genes	chr3L_4_11265001	chr3L_11265001	RAL-385
628	chr3L	11723075	11723110	chr3L	11727890	11727924	Doc	11	4813	1.0	5.5	3.2	2.6	4849	chr3L	11723075	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727924	3` UTR	Bmcp +	chr3L_11_11725001	chr3L_11725001	RAL-385
645	chr3L	12874903	12874952	chr3L	12877215	12877264	jockey	4	2312	1.5	2.0	1.8	1.4	2361	chr3L	12874903	intergenic	not near genes	chr3L	12876084	intergenic	not near genes	chr3L	12877264	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	RAL-385
646	chr3L	12957810	12957818	chr3L	12962267	12962318	copia	4	4474	1.0	1.5	1.2	1.8	4508	chr3L	12957810	intergenic	not near genes	chr3L	12960064	intergenic	not near genes	chr3L	12962318	intergenic	not near genes	chr3L_4_12960001	chr3L_12960001	RAL-385
655	chr3L	14468434	14468475	chr3L	14473656	14473701	copia	6	5225	0.5	0.5	0.5	4.0	5267	chr3L	14468434	intron	bbg -	chr3L	14471068	intron	bbg -	chr3L	14473701	intron	bbg -	chr3L_6_14470001	chr3L_14470001	RAL-385
661	chr3L	14970746	14970760	chr3L	14971076	14971090	F-element	4	330	4.5	5.0	4.8	0.7	344	chr3L	14970746	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971090	intergenic	not near genes	chr3L_4_14970001	chr3L_14970001	RAL-385
666	chr3L	15295767	15295796	chr3L	15298620	15298659	gypsy5	5	2857	1.5	5.0	3.2	1.2	2892	chr3L	15295767	intergenic	not near genes	chr3L	15297213	intergenic	not near genes	chr3L	15298659	intergenic	Best4 +	chr3L_5_15295001	chr3L_15295001	RAL-385
667	chr3L	15423745	15423784	chr3L	15426608	15426648	opus	4	2862	2.5	4.0	3.2	1.0	2903	chr3L	15423745	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426648	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-385
670	chr3L	15554900	15554943	chr3L	15556707	15556747	S-element	6	1806	4.0	2.0	3.0	1.5	1847	chr3L	15554900	intron	AGO2 +	chr3L	15555824	intron	AGO2 +	chr3L	15556747	intron	AGO2 +	chr3L_6_15555001	chr3L_15555001	RAL-385
673	chr3L	15929190	15929224	chr3L	15938347	15938391	roo	8	9157	1.0	2.5	1.8	2.9	9201	chr3L	15929190	intron	Pka-C3 -	chr3L	15933790	intron	Pka-C3 -	chr3L	15938391	intron	Pka-C3 -	chr3L_8_15930001	chr3L_15930001	RAL-385
675	chr3L	16184089	16184136	chr3L	16188928	16188949	X-element	12	4830	2.0	0.0	1.0	6.0	4860	chr3L	16184089	intergenic	not near genes	chr3L	16186519	intergenic	not near genes	chr3L	16188949	intergenic	not near genes	chr3L_12_16185001	chr3L_16185001	RAL-385
678	chr3L	16493960	16494012	chr3L	16494493	16494524	jockey	11	529	3.5	3.0	3.2	2.6	564	chr3L	16493960	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494524	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_11_16490001	chr3L_16490001	RAL-385
681	chr3L	16616490	16616539	chr3L	16621838	16621887	297	4	5348	2.5	1.0	1.8	1.4	5397	chr3L	16616490	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621887	3` UTR	Abl -	chr3L_4_16615001	chr3L_16615001	RAL-385
685	chr3L	17034915	17034962	chr3L	17035123	17035170	G2	11	207	0.5	1.5	1.0	5.5	255	chr3L	17034915	intergenic	not near genes	chr3L	17035042	intergenic	not near genes	chr3L	17035170	intergenic	beg +	chr3L_11_17035001	chr3L_17035001	RAL-385
686	chr3L	17084983	17085033	chr3L	17094151	17094201	roo	16	9168	4.0	1.5	2.8	4.2	9218	chr3L	17084983	intron	Rbp6 -	chr3L	17089592	intron	Rbp6 -	chr3L	17094201	intron	Rbp6 -	chr3L_16_17085001	chr3L_17085001	RAL-385
693	chr3L	17730837	17730863	chr3L	17738182	17738213	mdg1	13	7348	7.0	1.0	4.0	2.6	7376	chr3L	17730837	intron	Ccn +	chr3L	17734525	intron	Ccn +	chr3L	17738213	intron	Ccn +	chr3L_13_17730001	chr3L_17730001	RAL-385
696	chr3L	17799796	17799821	chr3L	17801603	17801628	S-element	9	1806	8.0	3.5	5.8	1.3	1832	chr3L	17799796	intron	NUCB1 -	chr3L	17800712	intron	NUCB1 -	chr3L	17801628	intron	NUCB1 -	chr3L_9_17800001	chr3L_17800001	RAL-385
699	chr3L	17918368	17918398	chr3L	17921189	17921200	opus	4	2815	1.5	3.5	2.5	1.1	2832	chr3L	17918368	intergenic	not near genes	chr3L	17919784	intergenic	not near genes	chr3L	17921200	intergenic	not near genes	chr3L_4_17915001	chr3L_17915001	RAL-385
701	chr3L	18047696	18047730	chr3L	18056773	18056805	roo	8	9074	3.0	4.0	3.5	1.8	9109	chr3L	18047696	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056805	intron	Eip75B -	chr3L_8_18050001	chr3L_18050001	RAL-385
708	chr3L	18528611	18528656	chr3L	18537792	18537836	roo	8	9180	3.0	3.5	3.2	1.9	9225	chr3L	18528611	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537836	intergenic	not near genes	chr3L_8_18530001	chr3L_18530001	RAL-385
709	chr3L	18593935	18593976	chr3L	18595935	18595962	Doc	8	1995	4.5	3.0	3.8	1.7	2027	chr3L	18593935	intergenic	term -	chr3L	18594948	intergenic	not near genes	chr3L	18595962	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	RAL-385
710	chr3L	18772388	18772437	chr3L	18781089	18781102	roo	5	8690	2.5	0.5	1.5	2.0	8714	chr3L	18772388	intron	ftz-f1 -	chr3L	18776745	intron	ftz-f1 -	chr3L	18781102	intron	ftz-f1 -	chr3L_5_18775001	chr3L_18775001	RAL-385
727	chr3L	19820279	19820313	chr3L	19827848	19827875	412	10	7567	2.5	2.0	2.2	3.1	7596	chr3L	19820279	intron	Deaf1 +	chr3L	19824077	intron	Deaf1 +	chr3L	19827875	intron	Deaf1 +	chr3L_10_19820001	chr3L_19820001	RAL-385
728	chr3L	19861818	19861853	chr3L	19863626	19863661	S-element	4	1804	1.5	2.0	1.8	1.4	1843	chr3L	19861818	5` UTR	CR45433 +	chr3L	19862740	intergenic	not near genes	chr3L	19863661	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-385
730	chr3L	20113640	20113660	chr3L	20122917	20122937	roo	7	9275	8.0	5.0	6.5	0.9	9297	chr3L	20113640	intergenic	not near genes	chr3L	20118288	intergenic	not near genes	chr3L	20122937	intergenic	not near genes	chr3L_7_20115001	chr3L_20115001	RAL-385
731	chr3L	20113664	20113688	chr3L	20122912	20122965	roo	7	9270	3.5	4.5	4.0	1.4	9301	chr3L	20113664	intergenic	not near genes	chr3L	20118314	intergenic	not near genes	chr3L	20122965	intergenic	not near genes	chr3L_7_20115001	chr3L_20115001	RAL-385
747	chr3L	21151851	21151897	chr3L	21156955	21157001	flea	9	5103	3.0	2.5	2.8	2.4	5150	chr3L	21151851	intron	Ac78C -	chr3L	21154426	intron	Ac78C -	chr3L	21157001	intron	Ac78C -	chr3L_9_21150001	chr3L_21150001	RAL-385
751	chr3L	21306138	21306141	chr3L	21315317	21315320	roo	4	9179	6.5	2.0	4.2	0.8	9182	chr3L	21306138	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310729	intron	Pc -	chr3L	21315320	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-385
752	chr3L	21306142	21306175	chr3L	21315315	21315354	roo	8	9178	2.5	2.0	2.2	2.5	9212	chr3L	21306142	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310748	intron	Pc -	chr3L	21315354	3` UTR	Pc -	chr3L_8_21310001	chr3L_21310001	RAL-385
753	chr3L	21372702	21372750	chr3L	21379230	21379278	McClintock	12	6526	3.5	4.5	4.0	2.4	6576	chr3L	21372702	intergenic	not near genes	chr3L	21375990	intergenic	not near genes	chr3L	21379278	intergenic	not near genes	chr3L_12_21375001	chr3L_21375001	RAL-385
762	chr3L	22099665	22099705	chr3L	22105867	22105911	3S18	4	6196	0.0	2.5	1.2	1.8	6246	chr3L	22099665	intergenic	not near genes	chr3L	22102788	intergenic	not near genes	chr3L	22105911	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-385
769	chr3L	22617175	22617222	chr3L	22624647	22624692	blood	8	7464	1.0	4.5	2.8	2.1	7517	chr3L	22617175	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624692	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	RAL-385
770	chr3L	22761380	22761397	chr3L	22766834	22766845	Ivk	5	5453	4.0	4.5	4.2	1.0	5465	chr3L	22761380	intron	SPoCk +	chr3L	22764112	intron	SPoCk +	chr3L	22766845	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-385
774	chr3L	22866000	22866012	chr3L	22867116	22867152	Doc	4	1140	2.0	4.0	3.0	1.0	1152	chr3L	22866000	intron	CG33170 +	chr3L	22866576	intron	CG33170 +	chr3L	22867152	intron	CG33170 +	chr3L_4_22865001	chr3L_22865001	RAL-385
780	chr3L	22955367	22955416	chr3L	22956680	22956728	INE-1	5	1309	2.5	1.5	2.0	1.7	1361	chr3L	22955367	intergenic	CG32461 -	chr3L	22956048	intergenic	not near genes	chr3L	22956728	intergenic	not near genes	chr3L_5_22955001	chr3L_22955001	RAL-385
783	chr3L	23909133	23909169	chr3L	23912263	23912303	G3	5	3131	11.5	17.5	14.5	0.3	3170	chr3L	23909133	intron,5` UTR	CG40470 -,CR43942 +	chr3L	23910718	intron	CG40470 -	chr3L	23912303	exon	CG40470 -	chr3L_5_23910001	chr3L_23910001	RAL-385
786	chr3L	24791881	24791921	chr3L	24796680	24796705	Doc	5	4796	2.5	1.0	1.8	1.8	4824	chr3L	24791881	intergenic	not near genes	chr3L	24794293	intergenic	not near genes	chr3L	24796705	intergenic	not near genes	chr3L_5_24790001	chr3L_24790001	RAL-385
792	chr3L	27980676	27980725	chr3L	27985494	27985543	Doc	6	4818	0.5	2.5	1.5	2.4	4867	chr3L	27980676	intron	CG17514 -	chr3L	27983110	intron	CG17514 -	chr3L	27985543	intron	CG17514 -	chr3L_6_27980001	chr3L_27980001	RAL-385
794	chr3R	1850874	1850901	chr3R	1853521	1853548	INE-1	4	2644	0.0	1.5	0.8	2.2	2674	chr3R	1850874	intron	CG42623 +	chr3R	1852211	intron	CG42623 +	chr3R	1853548	intron	CG42623 +	chr3R_4_1850001	chr3R_1850001	RAL-385
796	chr3R	4105023	4105065	chr3R	4110247	4110263	copia	5	5215	2.5	1.5	2.0	1.7	5240	chr3R	4105023	intergenic	not near genes	chr3R	4107643	intergenic	not near genes	chr3R	4110263	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	RAL-385
797	chr3R	4206060	4206104	chr3R	4211649	4211699	mdg3	6	5588	2.5	2.5	2.5	1.7	5639	chr3R	4206060	intron	CG14636 -	chr3R	4208880	intron	CG14636 -	chr3R	4211699	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RAL-385
799	chr3R	4366748	4366775	chr3R	4375151	4375178	roo	8	8399	4.5	7.5	6.0	1.1	8430	chr3R	4366748	3` UTR	CG1090 +	chr3R	4370963	intergenic	not near genes	chr3R	4375178	5` UTR	CR44922 +	chr3R_8_4370001	chr3R_4370001	RAL-385
800	chr3R	4408405	4408448	chr3R	4412722	4412772	Juan	5	4323	1.5	4.5	3.0	1.2	4367	chr3R	4408405	intron	CG32944 -	chr3R	4410588	intron	CG32944 -	chr3R	4412772	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	RAL-385
802	chr3R	4609530	4609567	chr3R	4610714	4610751	1360	5	1179	1.5	1.5	1.5	2.0	1221	chr3R	4609530	intergenic	not near genes	chr3R	4610140	intergenic	not near genes	chr3R	4610751	intergenic	not near genes	chr3R_5_4610001	chr3R_4610001	RAL-385
804	chr3R	4759727	4759742	chr3R	4761244	4761259	hopper2	5	1515	0.0	5.5	2.8	1.3	1532	chr3R	4759727	intron,intron	atms +,CG44098 -	chr3R	4760493	intron,intron	atms +,CG44098 -	chr3R	4761259	intron,intron	atms +,CG44098 -	chr3R_5_4760001	chr3R_4760001	RAL-385
807	chr3R	5045823	5045875	chr3R	5052945	5052997	HMS-Beagle	4	7122	3.5	1.0	2.2	1.2	7174	chr3R	5045823	3` UTR	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5052997	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-385
808	chr3R	5067962	5068014	chr3R	5073499	5073551	mdg3	12	5535	2.5	2.0	2.2	3.8	5589	chr3R	5067962	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073551	intergenic	not near genes	chr3R_12_5070001	chr3R_5070001	RAL-385
811	chr3R	5338397	5338427	chr3R	5343579	5343607	Rt1c	7	5186	3.5	4.0	3.8	1.5	5210	chr3R	5338397	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343607	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-385
812	chr3R	5445947	5445982	chr3R	5452422	5452462	Burdock	6	6479	4.5	2.0	3.2	1.4	6515	chr3R	5445947	intron	CG14669 +	chr3R	5449204	intron	CG14669 +	chr3R	5452462	intron	CG14669 +	chr3R_6_5445001	chr3R_5445001	RAL-385
815	chr3R	5745999	5746041	chr3R	5746260	5746302	pogo	8	258	1.5	4.0	2.8	2.1	303	chr3R	5745999	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746302	3` UTR	Madm +	chr3R_8_5745001	chr3R_5745001	RAL-385
816	chr3R	5747000	5747020	chr3R	5753211	5753225	diver	4	6207	5.5	3.5	4.5	0.7	6225	chr3R	5747000	intergenic	Madm +	chr3R	5750112	intergenic	not near genes	chr3R	5753225	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-385
817	chr3R	5747028	5747043	chr3R	5753210	5753254	diver	5	6205	4.0	3.0	3.5	1.1	6226	chr3R	5747028	intergenic	Madm +	chr3R	5750141	intergenic	not near genes	chr3R	5753254	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	RAL-385
819	chr3R	5809105	5809143	chr3R	5809366	5809404	pogo	7	254	1.5	4.5	3.0	1.8	299	chr3R	5809105	3` UTR	CG11000 +	chr3R	5809254	3` UTR	CG11000 +	chr3R	5809404	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	RAL-385
820	chr3R	5822363	5822400	chr3R	5823550	5823587	1360	7	1186	3.0	5.0	4.0	1.4	1224	chr3R	5822363	3` UTR	CG2023 -	chr3R	5822975	3` UTR	CG2023 -	chr3R	5823587	3` UTR	CG2023 -	chr3R_7_5820001	chr3R_5820001	RAL-385
821	chr3R	5927556	5927592	chr3R	5927799	5927806	pogo	8	245	2.5	2.0	2.2	2.5	250	chr3R	5927556	intron	CG34113 -	chr3R	5927681	intron	CG34113 -	chr3R	5927806	intron	CG34113 -	chr3R_8_5925001	chr3R_5925001	RAL-385
824	chr3R	6121168	6121183	chr3R	6121406	6121421	BS	4	238	0.5	10.0	5.2	0.6	253	chr3R	6121168	intergenic	not near genes	chr3R	6121294	intergenic	not near genes	chr3R	6121421	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	RAL-385
826	chr3R	6175173	6175201	chr3R	6182460	6182492	HMS-Beagle2	7	7285	5.0	1.0	3.0	1.8	7319	chr3R	6175173	intergenic	Osi1 +	chr3R	6178832	intron	CR45194 +	chr3R	6182492	intergenic	CR45194 +	chr3R_7_6175001	chr3R_6175001	RAL-385
830	chr3R	6510008	6510020	chr3R	6515109	6515121	jockey	4	5101	6.5	3.0	4.8	0.7	5113	chr3R	6510008	intergenic	not near genes	chr3R	6512564	intergenic	not near genes	chr3R	6515121	intergenic	not near genes	chr3R_4_6510001	chr3R_6510001	RAL-385
833	chr3R	6737512	6737524	chr3R	6739289	6739331	Doc	4	1793	0.5	2.0	1.2	1.8	1819	chr3R	6737512	intron	pb -	chr3R	6738422	intron	pb -	chr3R	6739331	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-385
845	chr3R	7694558	7694607	chr3R	7713639	7713640	invader3	6	19072	2.0	1.5	1.8	2.1	19082	chr3R	7694558	3` UTR	Nlg1 +	chr3R	7704099	intergenic	not near genes	chr3R	7713640	intergenic	not near genes	chr3R_6_7700001	chr3R_7700001	RAL-385
846	chr3R	7729466	7729492	chr3R	7737409	7737430	Stalker2	8	7945	2.0	5.0	3.5	1.8	7964	chr3R	7729466	intergenic	not near genes	chr3R	7733448	intergenic	not near genes	chr3R	7737430	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-385
853	chr3R	7973293	7973346	chr3R	7974374	7974430	1360	5	1081	1.0	4.0	2.5	1.4	1137	chr3R	7973293	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974430	3` UTR	CD98hc -	chr3R_5_7970001	chr3R_7970001	RAL-385
856	chr3R	8094388	8094427	chr3R	8099713	8099752	Transpac	4	5324	3.0	1.0	2.0	1.3	5364	chr3R	8094388	intron	CG7900 +	chr3R	8097070	intron	CG7900 +	chr3R	8099752	intron	CG7900 +	chr3R_4_8095001	chr3R_8095001	RAL-385
869	chr3R	9278773	9278808	chr3R	9284042	9284088	Rt1a	6	5274	0.5	2.0	1.2	2.7	5315	chr3R	9278773	intergenic	not near genes	chr3R	9281430	intergenic	not near genes	chr3R	9284088	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-385
870	chr3R	9361806	9361846	chr3R	9362056	9362107	pogo	11	258	3.0	1.5	2.2	3.4	301	chr3R	9361806	3` UTR	CG45050 +	chr3R	9361956	3` UTR	CG45050 +	chr3R	9362107	3` UTR	CG45050 +	chr3R_11_9360001	chr3R_9360001	RAL-385
876	chr3R	10231774	10231807	chr3R	10237371	10237403	mdg3	4	5597	4.5	3.0	3.8	0.8	5629	chr3R	10231774	intron	CG42795 +	chr3R	10234588	intron	CG42795 +	chr3R	10237403	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-385
881	chr3R	10804163	10804185	chr3R	10811715	10811737	17.6	4	7552	0.5	1.5	1.0	2.0	7574	chr3R	10804163	intergenic	CG14692 -	chr3R	10807950	intergenic	not near genes	chr3R	10811737	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-385
890	chr3R	11379225	11379260	chr3R	11388399	11388424	roo	11	9169	2.0	0.5	1.2	5.0	9199	chr3R	11379225	intron	pros +	chr3R	11383824	intron	pros +	chr3R	11388424	intron	pros +	chr3R_11_11380001	chr3R_11380001	RAL-385
895	chr3R	11957833	11957881	chr3R	11958136	11958154	S-element	7	297	2.5	0.5	1.5	2.8	321	chr3R	11957833	intergenic	not near genes	chr3R	11957994	intergenic	not near genes	chr3R	11958154	intergenic	not near genes	chr3R_7_11955001	chr3R_11955001	RAL-385
896	chr3R	12022864	12022904	chr3R	12025061	12025101	pogo	7	2190	2.5	2.5	2.5	2.0	2237	chr3R	12022864	intergenic	not near genes	chr3R	12023982	intergenic	not near genes	chr3R	12025101	intergenic	not near genes	chr3R_7_12020001	chr3R_12020001	RAL-385
904	chr3R	12864528	12864542	chr3R	12865050	12865064	roo	4	522	2.5	2.5	2.5	1.1	536	chr3R	12864528	intergenic	not near genes	chr3R	12864796	intergenic	not near genes	chr3R	12865064	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-385
919	chr3R	14180792	14180820	chr3R	14185577	14185589	F-element	8	4782	3.0	0.5	1.8	2.9	4797	chr3R	14180792	intron	Dop1R1 -	chr3R	14183190	intron	Dop1R1 -	chr3R	14185589	intron	Dop1R1 -	chr3R_8_14180001	chr3R_14180001	RAL-385
920	chr3R	14194424	14194458	chr3R	14203578	14203627	roo	5	9158	2.0	2.5	2.2	1.6	9203	chr3R	14194424	intron	Dop1R1 -	chr3R	14199026	intron	Dop1R1 -	chr3R	14203627	intron	Dop1R1 -	chr3R_5_14195001	chr3R_14195001	RAL-385
928	chr3R	15059308	15059477	chr3R	15059475	15059584	BS	8	166	0.0	0.0	0.0	8.0	276	chr3R	15059308	intron	dpr9 -	chr3R	15059446	intron	dpr9 -	chr3R	15059584	intron	dpr9 -	chr3R_8_15055001	chr3R_15055001	RAL-385
929	chr3R	15079789	15079824	chr3R	15080050	15080085	pogo	7	257	6.0	0.0	3.0	1.8	296	chr3R	15079789	3` UTR	CG6966 -	chr3R	15079937	3` UTR	CG6966 -	chr3R	15080085	3` UTR	CG6966 -	chr3R_7_15075001	chr3R_15075001	RAL-385
930	chr3R	15102495	15102525	chr3R	15109773	15109799	412	4	7275	1.0	3.0	2.0	1.3	7304	chr3R	15102495	intron	CG42788 -	chr3R	15106147	intron	CG42788 -	chr3R	15109799	intron	CG42788 -	chr3R_4_15105001	chr3R_15105001	RAL-385
931	chr3R	15132046	15132065	chr3R	15135124	15135125	Juan	9	3078	4.0	5.0	4.5	1.6	3079	chr3R	15132046	intergenic	CG42788 -	chr3R	15133586	intergenic	not near genes	chr3R	15135125	intergenic	CG6912 -	chr3R_9_15130001	chr3R_15130001	RAL-385
939	chr3R	15618748	15618760	chr3R	15626219	15626233	blood	4	7478	2.0	4.0	3.0	1.0	7485	chr3R	15618748	intergenic	not near genes	chr3R	15622490	intergenic	not near genes	chr3R	15626233	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-385
951	chr3R	17294665	17294701	chr3R	17295098	17295149	BS	5	444	2.0	0.0	1.0	2.5	484	chr3R	17294665	intergenic	not near genes	chr3R	17294907	intergenic	not near genes	chr3R	17295149	intergenic	not near genes	chr3R_5_17290001	chr3R_17290001	RAL-385
952	chr3R	17346693	17346709	chr3R	17348254	17348292	F-element	4	1576	4.5	1.0	2.8	1.1	1599	chr3R	17346693	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348292	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-385
956	chr3R	17638299	17638342	chr3R	17638805	17638848	roo	10	506	4.5	3.5	4.0	2.0	549	chr3R	17638299	intron	CG43175 +	chr3R	17638574	intron	CG43175 +	chr3R	17638848	intron,intron	CG43175 +,CR45222 +	chr3R_10_17635001	chr3R_17635001	RAL-385
960	chr3R	17925866	17925879	chr3R	17927322	17927366	hobo	5	1481	1.0	2.5	1.8	1.8	1500	chr3R	17925866	intron	cpo +	chr3R	17926616	intron	cpo +	chr3R	17927366	intron	cpo +	chr3R_5_17925001	chr3R_17925001	RAL-385
968	chr3R	18606493	18606534	chr3R	18610738	18610786	F-element	7	4249	2.0	2.0	2.0	2.3	4293	chr3R	18606493	intron,intron	qin +,CG14304 -	chr3R	18608640	intron,intron	qin +,CG14304 -	chr3R	18610786	intron,intron	qin +,CG14304 -	chr3R_7_18605001	chr3R_18605001	RAL-385
981	chr3R	20109529	20109567	chr3R	20114755	20114792	copia	8	5223	2.5	1.0	1.8	2.9	5263	chr3R	20109529	intergenic	not near genes	chr3R	20112160	intergenic	not near genes	chr3R	20114792	intergenic	CG10887 +	chr3R_8_20110001	chr3R_20110001	RAL-385
982	chr3R	20156681	20156717	chr3R	20165870	20165887	roo	6	9186	2.5	1.5	2.0	2.0	9206	chr3R	20156681	intergenic	not near genes	chr3R	20161284	intergenic	not near genes	chr3R	20165887	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-385
986	chr3R	20245278	20245294	chr3R	20248908	20248924	F-element	6	3630	0.5	0.0	0.2	5.0	3646	chr3R	20245278	3` UTR	Nlg4 +	chr3R	20247101	intergenic	not near genes	chr3R	20248924	intergenic	not near genes	chr3R_6_20245001	chr3R_20245001	RAL-385
990	chr3R	20330978	20331024	chr3R	20331484	20331530	roo	13	501	2.5	5.0	3.8	2.7	552	chr3R	20330978	intergenic	Sirt2 +	chr3R	20331254	intergenic	Sirt2 +	chr3R	20331530	intergenic	not near genes	chr3R_13_20330001	chr3R_20330001	RAL-385
992	chr3R	20512984	20513035	chr3R	20515707	20515758	opus	12	2722	3.0	5.0	4.0	2.4	2774	chr3R	20512984	intergenic	not near genes	chr3R	20514371	intergenic	not near genes	chr3R	20515758	intergenic	not near genes	chr3R_12_20510001	chr3R_20510001	RAL-385
1009	chr3R	21761125	21761152	chr3R	21768513	21768550	mdg1	5	7400	1.5	1.5	1.5	2.0	7425	chr3R	21761125	exon	CG42335 +	chr3R	21764838	intron	CG42335 +	chr3R	21768550	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-385
1016	chr3R	22234671	22234711	chr3R	22236010	22236042	pogo	5	1332	2.0	0.0	1.0	2.5	1371	chr3R	22234671	intron	SKIP +	chr3R	22235356	intron	SKIP +	chr3R	22236042	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-385
1030	chr3R	23558382	23558405	chr3R	23560183	23560206	Bari1	7	1798	4.5	1.0	2.8	1.8	1824	chr3R	23558382	intron	beat-IV +	chr3R	23559294	intron	beat-IV +	chr3R	23560206	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-385
1036	chr3R	24207205	24207239	chr3R	24212302	24212326	flea	5	5092	1.0	6.0	3.5	1.1	5121	chr3R	24207205	intron	twin -	chr3R	24209766	intron	twin -	chr3R	24212326	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-385
1038	chr3R	24493269	24493308	chr3R	24493518	24493557	BS	5	249	1.0	5.5	3.2	1.2	288	chr3R	24493269	intergenic	not near genes	chr3R	24493413	intergenic	not near genes	chr3R	24493557	intergenic	not near genes	chr3R_5_24490001	chr3R_24490001	RAL-385
1053	chr3R	25725807	25725859	chr3R	25734987	25735039	roo	8	9174	1.0	0.0	0.5	5.3	9232	chr3R	25725807	intron	LpR2 -	chr3R	25730423	intron	LpR2 -	chr3R	25735039	intron	LpR2 -	chr3R_8_25730001	chr3R_25730001	RAL-385
1068	chr3R	27007398	27007419	chr3R	27016551	27016571	roo	4	9148	4.0	3.0	3.5	0.9	9173	chr3R	27007398	intron	RYa-R +	chr3R	27011984	intron	RYa-R +	chr3R	27016571	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	RAL-385
1070	chr3R	27140528	27140545	chr3R	27148148	27148175	412	5	7627	1.0	6.5	3.8	1.0	7647	chr3R	27140528	intron	CG6051 -	chr3R	27144352	intron	CG6051 -	chr3R	27148175	intron	CG6051 -	chr3R_5_27140001	chr3R_27140001	RAL-385
1073	chr3R	27342777	27342824	chr3R	27351378	27351424	Tirant	8	8596	1.0	2.5	1.8	2.9	8647	chr3R	27342777	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351424	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-385
1076	chr3R	27521136	27521174	chr3R	27530364	27530403	roo	8	9228	4.0	2.5	3.2	1.9	9267	chr3R	27521136	intron	CG12885 +	chr3R	27525770	intron	CG12885 +	chr3R	27530403	intron	CG12885 +	chr3R_8_27525001	chr3R_27525001	RAL-385
1081	chr3R	27725534	27725600	chr3R	27731015	27731043	I-element	4	5461	0.0	0.0	0.0	4.0	5509	chr3R	27725534	intergenic	not near genes	chr3R	27728288	intergenic	not near genes	chr3R	27731043	intergenic	not near genes	chr3R_4_27725001	chr3R_27725001	RAL-385
1083	chr3R	27875695	27875729	chr3R	27882755	27882797	297	7	7070	2.0	1.0	1.5	2.8	7102	chr3R	27875695	intron	CG34353 -	chr3R	27879246	intron	CG34353 -	chr3R	27882797	intron	CG34353 -	chr3R_7_27875001	chr3R_27875001	RAL-385
1088	chr3R	28173655	28173704	chr3R	28181105	28181154	mdg1	9	7444	2.0	4.5	3.2	2.1	7499	chr3R	28173655	intron	CG34354 +	chr3R	28177404	intron	CG34354 +	chr3R	28181154	intron	CG34354 +	chr3R_9_28175001	chr3R_28175001	RAL-385
1089	chr3R	28253342	28253366	chr3R	28255857	28255859	jockey	4	2511	1.5	2.0	1.8	1.4	2517	chr3R	28253342	intergenic	not near genes	chr3R	28254600	intergenic	not near genes	chr3R	28255859	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-385
1091	chr3R	28302087	28302113	chr3R	28302549	28302575	jockey	10	460	3.0	4.5	3.8	2.1	488	chr3R	28302087	intergenic	not near genes	chr3R	28302331	intergenic	not near genes	chr3R	28302575	intergenic	not near genes	chr3R_10_28300001	chr3R_28300001	RAL-385
1110	chr3R	29319802	29319854	chr3R	29320141	29320147	jockey	12	335	1.5	0.5	1.0	6.0	345	chr3R	29319802	intergenic	Cnx99A -	chr3R	29319974	intergenic	Cnx99A -	chr3R	29320147	intergenic	not near genes	chr3R_12_29315001	chr3R_29315001	RAL-385
1111	chr3R	29406620	29406645	chr3R	29407894	29407943	jockey	5	1288	1.5	2.5	2.0	1.7	1323	chr3R	29406620	intron	Ptp99A +	chr3R	29407282	intron	Ptp99A +	chr3R	29407943	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-385
1117	chr3R	29738244	29738275	chr3R	29739731	29739762	hobo	10	1484	3.0	1.5	2.2	3.1	1518	chr3R	29738244	intergenic	CG1969 +,CG7598 +	chr3R	29739003	intron	CG1969 +	chr3R	29739762	5` UTR	CG1969 +	chr3R_10_29735001	chr3R_29735001	RAL-385
1118	chr3R	29760349	29760381	chr3R	29761570	29761602	pogo	6	1221	3.0	2.5	2.8	1.6	1253	chr3R	29760349	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761602	intergenic	not near genes	chr3R_6_29760001	chr3R_29760001	RAL-385
1119	chr3R	29882007	29882053	chr3R	29891184	29891229	roo	12	9173	2.0	3.0	2.5	3.4	9222	chr3R	29882007	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891229	intron	CG31038 +	chr3R_12_29885001	chr3R_29885001	RAL-385
1124	chr3R	30238754	30238792	chr3R	30239938	30239976	1360	9	1184	3.5	2.5	3.0	2.2	1222	chr3R	30238754	intergenic	not near genes	chr3R	30239365	intergenic	not near genes	chr3R	30239976	intergenic	not near genes	chr3R_9_30235001	chr3R_30235001	RAL-385
1125	chr3R	30396205	30396249	chr3R	30404488	30404534	roo	7	8285	2.0	1.5	1.8	2.5	8329	chr3R	30396205	intergenic	not near genes	chr3R	30400370	intergenic	not near genes	chr3R	30404534	5` UTR	CR45570 +	chr3R_7_30400001	chr3R_30400001	RAL-385
1130	chr3R	30818803	30818832	chr3R	30820388	30820391	1360	5	1580	2.0	3.0	2.5	1.4	1588	chr3R	30818803	intron	cindr +	chr3R	30819597	intron	cindr +	chr3R	30820391	intron	cindr +	chr3R_5_30815001	chr3R_30815001	RAL-385
1137	chr3R	31279362	31279386	chr3R	31285563	31285597	diver	4	6202	2.5	0.5	1.5	1.6	6235	chr3R	31279362	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285597	intergenic	not near genes	chr3R_4_31280001	chr3R_31280001	RAL-385
1139	chr3R	31413093	31413117	chr3R	31418299	31418310	copia	4	5208	1.5	0.5	1.0	2.0	5217	chr3R	31413093	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418310	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-385
1147	chrX	428430	428440	chrX	434603	434644	3S18	4	6189	2.0	2.0	2.0	1.3	6214	chrX	428430	intron	CG32816 -	chrX	431537	intron	CG32816 -	chrX	434644	intron	CG32816 -	chrX_4_430001	chrX_430001	RAL-385
1150	chrX	812280	812297	chrX	817896	817896	297	5	5631	4.5	2.0	3.2	1.2	5616	chrX	812280	intron	CG43867 -	chrX	815088	intron	CG43867 -	chrX	817896	intron	CG43867 -	chrX_5_815001	chrX_815001	RAL-385
1152	chrX	1357773	1357804	chrX	1367942	1367985	Doc	5	10184	2.5	2.0	2.2	1.6	10212	chrX	1357773	intergenic	png -	chrX	1362879	intergenic	not near genes	chrX	1367985	intergenic	not near genes	chrX_5_1360001	chrX_1360001	RAL-385
1154	chrX	1518037	1518068	chrX	1523459	1523482	jockey	6	5418	2.0	5.5	3.8	1.2	5445	chrX	1518037	intergenic	inc +	chrX	1520760	intergenic	not near genes	chrX	1523482	intergenic	not near genes	chrX_6_1520001	chrX_1520001	RAL-385
1155	chrX	1930519	1930568	chrX	1938110	1938159	opus	7	7586	3.5	5.5	4.5	1.3	7640	chrX	1930519	intergenic	CG11596 +	chrX	1934339	intergenic	not near genes	chrX	1938159	3` UTR	CG3857 -	chrX_7_1930001	chrX_1930001	RAL-385
1164	chrX	3493072	3493116	chrX	3502251	3502295	roo	4	9176	1.0	0.5	0.8	2.2	9223	chrX	3493072	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502295	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-385
1166	chrX	3597548	3597577	chrX	3619718	3619761	roo	4	22172	2.5	1.0	1.8	1.4	22213	chrX	3597548	intron	AstA-R1 +	chrX	3608654	intron	AstA-R1 +	chrX	3619761	intron	AstA-R1 +	chrX_4_3605001	chrX_3605001	RAL-385
1172	chrX	3986849	3986878	chrX	3994502	3994530	412	8	7651	1.0	1.0	1.0	4.0	7681	chrX	3986849	intergenic	not near genes	chrX	3990690	intergenic	not near genes	chrX	3994530	intergenic	not near genes	chrX_8_3990001	chrX_3990001	RAL-385
1174	chrX	4792364	4792406	chrX	4792816	4792838	jockey	5	446	1.0	1.5	1.2	2.3	474	chrX	4792364	intergenic	not near genes	chrX	4792601	intergenic	not near genes	chrX	4792838	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-385
1175	chrX	4827988	4828001	chrX	4835343	4835390	Stalker4	4	7368	1.0	1.5	1.2	1.8	7402	chrX	4827988	intergenic	not near genes	chrX	4831689	intergenic	not near genes	chrX	4835390	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-385
1178	chrX	4990023	4990075	chrX	4997257	4997309	roo	5	7225	1.5	1.5	1.5	2.0	7286	chrX	4990023	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997309	intron	CR44833 -	chrX_5_4990001	chrX_4990001	RAL-385
1179	chrX	5096261	5096304	chrX	5103845	5103869	springer	5	7581	0.0	2.0	1.0	2.5	7608	chrX	5096261	intron,intron	CG15465 +,rg +	chrX	5100065	intron,intron	CG15465 +,rg +	chrX	5103869	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	RAL-385
1181	chrX	5524847	5524859	chrX	5528730	5528742	412	7	3882	1.5	2.5	2.0	2.3	3895	chrX	5524847	intergenic	snoRNA:Psi28S-3342 -	chrX	5526794	intergenic	not near genes	chrX	5528742	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	RAL-385
1183	chrX	6171584	6171613	chrX	6179016	6179023	Quasimodo	5	7438	0.5	1.5	1.0	2.5	7439	chrX	6171584	intron	Ca-alpha1T -	chrX	6175304	intron	Ca-alpha1T -	chrX	6179023	intron	Ca-alpha1T -	chrX_5_6175001	chrX_6175001	RAL-385
1188	chrX	7023580	7023605	chrX	7030990	7031008	Tabor	5	7406	3.5	1.5	2.5	1.4	7428	chrX	7023580	intron	CG12541 -	chrX	7027294	intron	CG12541 -	chrX	7031008	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-385
1190	chrX	7702886	7702936	chrX	7703343	7703364	jockey	11	454	3.5	3.0	3.2	2.6	478	chrX	7702886	intron	CHES-1-like -	chrX	7703125	intron	CHES-1-like -	chrX	7703364	intron	CHES-1-like -	chrX_11_7700001	chrX_7700001	RAL-385
1192	chrX	8031419	8031453	chrX	8035735	8035782	Juan	6	4325	4.0	2.5	3.2	1.4	4363	chrX	8031419	intergenic	not near genes	chrX	8033600	intergenic	not near genes	chrX	8035782	3` UTR	CG2233 -	chrX_6_8030001	chrX_8030001	RAL-385
1194	chrX	8364836	8364872	chrX	8365253	8365306	BS	6	430	2.5	1.0	1.8	2.1	470	chrX	8364836	intron	nAChRalpha3 -	chrX	8365071	intron	nAChRalpha3 -	chrX	8365306	intron	nAChRalpha3 -	chrX_6_8365001	chrX_8365001	RAL-385
1201	chrX	8922336	8922360	chrX	8922761	8922761	jockey	4	430	0.5	0.5	0.5	2.7	425	chrX	8922336	intron	rdgA +	chrX	8922548	intron	rdgA +	chrX	8922761	intron	rdgA +	chrX_4_8920001	chrX_8920001	RAL-385
1202	chrX	8927577	8927610	chrX	8929867	8929900	NOF	8	2285	2.0	1.5	1.8	2.9	2323	chrX	8927577	intron	rdgA +	chrX	8928738	intron	rdgA +	chrX	8929900	intron	rdgA +	chrX_8_8925001	chrX_8925001	RAL-385
1218	chrX	11095983	11095999	chrX	11103105	11103121	HMS-Beagle	4	7122	7.5	5.0	6.2	0.6	7138	chrX	11095983	intergenic	not near genes	chrX	11099552	intergenic	not near genes	chrX	11103121	intron	CG42249 +	chrX_4_11095001	chrX_11095001	RAL-385
1223	chrX	11633404	11633433	chrX	11640472	11640507	297	4	7072	3.0	1.0	2.0	1.3	7103	chrX	11633404	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640507	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-385
1229	chrX	12930586	12930605	chrX	12937722	12937736	HMS-Beagle	4	7130	1.5	3.0	2.2	1.2	7150	chrX	12930586	intron	fne +	chrX	12934161	intron	fne +	chrX	12937736	intron	fne +	chrX_4_12930001	chrX_12930001	RAL-385
1235	chrX	13463625	13463677	chrX	13469221	13469241	mdg3	6	5590	1.5	1.0	1.2	2.7	5616	chrX	13463625	intron	Neto +	chrX	13466433	intron	Neto +	chrX	13469241	intron	Neto +	chrX_6_13465001	chrX_13465001	RAL-385
1240	chrX	14105003	14105051	chrX	14114174	14114209	roo	6	9154	1.5	0.5	1.0	3.0	9206	chrX	14105003	intergenic	not near genes	chrX	14109606	intergenic	not near genes	chrX	14114209	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-385
1242	chrX	14636457	14636493	chrX	14641912	14641946	I-element	4	5458	0.5	2.0	1.2	1.8	5489	chrX	14636457	intron	NetA -	chrX	14639202	intron	NetA -	chrX	14641946	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-385
1244	chrX	14778018	14778046	chrX	14782835	14782863	Doc	6	4817	4.0	1.5	2.8	1.6	4845	chrX	14778018	intergenic	CG5347 +	chrX	14780440	intergenic	not near genes	chrX	14782863	intergenic	Ag5r2 -	chrX_6_14780001	chrX_14780001	RAL-385
1247	chrX	15421899	15421946	chrX	15423430	15423476	pogo	10	1530	4.5	2.5	3.5	2.2	1577	chrX	15421899	intron	Cngl -	chrX	15422688	intron	Cngl -	chrX	15423476	intron	Cngl -	chrX_10_15420001	chrX_15420001	RAL-385
1250	chrX	16222764	16222806	chrX	16231134	16231176	roo	7	8370	0.5	3.0	1.8	2.5	8412	chrX	16222764	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231176	intergenic	not near genes	chrX_7_16225001	chrX_16225001	RAL-385
1253	chrX	16492634	16492679	chrX	16498231	16498248	mdg3	8	5586	2.5	2.0	2.2	2.5	5614	chrX	16492634	intron	para -	chrX	16495441	intron	para -	chrX	16498248	intron	para -	chrX_8_16495001	chrX_16495001	RAL-385
1269	chrX	18194060	18194101	chrX	18194600	18194656	BS	10	551	1.5	0.5	1.0	5.0	596	chrX	18194060	intron	Frq2 +	chrX	18194358	intron	Frq2 +	chrX	18194656	intron	Frq2 +	chrX_10_18190001	chrX_18190001	RAL-385
1275	chrX	19060405	19060433	chrX	19065208	19065237	Doc	4	4804	3.0	3.5	3.2	1.0	4832	chrX	19060405	intron	CG14190 +	chrX	19062821	intron	CG14190 +	chrX	19065237	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-385
1276	chrX	19136534	19136581	chrX	19143474	19143503	412	8	6935	1.5	2.0	1.8	2.9	6969	chrX	19136534	intergenic	not near genes	chrX	19140018	intergenic	not near genes	chrX	19143503	3` UTR	RhoGAP18B -	chrX_8_19140001	chrX_19140001	RAL-385
1278	chrX	19356974	19356996	chrX	19358435	19358442	NOF	4	1457	2.5	0.0	1.2	1.8	1468	chrX	19356974	intron	kek5 +	chrX	19357708	intron	kek5 +	chrX	19358442	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-385
1287	chrX	19710056	19710099	chrX	19711862	19711905	S-element	6	1802	1.5	4.5	3.0	1.5	1849	chrX	19710056	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711905	intron	meso18E -	chrX_6_19710001	chrX_19710001	RAL-385
1302	chrX	20940724	20940742	chrX	20942203	20942214	hobo	5	1479	1.5	4.0	2.8	1.3	1490	chrX	20940724	intergenic	not near genes	chrX	20941469	intergenic	not near genes	chrX	20942214	intergenic	not near genes	chrX_5_20940001	chrX_20940001	RAL-385
1304	chrX	21061868	21061896	chrX	21062360	21062401	roo	6	500	1.0	4.0	2.5	1.7	533	chrX	21061868	intron	bves +	chrX	21062134	intron	bves +	chrX	21062401	intron,3` UTR	bves +,CG32512 -	chrX_6_21060001	chrX_21060001	RAL-385
1306	chrX	21086129	21086164	chrX	21087177	21087213	jockey	6	1040	2.0	1.5	1.8	2.1	1084	chrX	21086129	intergenic	not near genes	chrX	21086671	intergenic	not near genes	chrX	21087213	intergenic	not near genes	chrX_6_21085001	chrX_21085001	RAL-385
1314	chrX	21458706	21458724	chrX	21464126	21464180	Ivk	6	5444	0.5	4.0	2.2	1.9	5474	chrX	21458706	intergenic	not near genes	chrX	21461443	intergenic	not near genes	chrX	21464180	intergenic	not near genes	chrX_6_21460001	chrX_21460001	RAL-385
1318	chrX	22522617	22522655	chrX	22525457	22525459	NOF	4	2827	2.0	0.5	1.2	1.8	2842	chrX	22522617	intron	CG17600 +	chrX	22524038	intron	CG17600 +	chrX	22525459	intron	CG17600 +	chrX_4_22520001	chrX_22520001	RAL-385
1321	chrX	22996298	22996340	chrX	23003552	23003557	roo	9	7241	2.0	2.5	2.2	2.8	7259	chrX	22996298	intron,intron	stnA -,stnB -	chrX	22999928	intron,intron	stnA -,stnB -	chrX	23003557	intron,intron	stnA -,stnB -	chrX_9_22995001	chrX_22995001	RAL-385