SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47451 47487 chr2L 52576 52612 jockey 5 5125 4.0 4.0 4.0 1.0 5161 chr2L 47451 intron Cda5 - chr2L 50032 intron Cda5 - chr2L 52612 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-385 2 chr2L 323434 323486 chr2L 323532 323575 8 95 1.5 3.0 2.2 2.5 141 chr2L 323434 intron Plc21C + chr2L 323504 intron Plc21C + chr2L 323575 intron Plc21C + chr2L_8_320001 chr2L_320001 RAL-385 3 chr2L 371422 371453 chr2L 371521 371532 5 94 2.0 3.0 2.5 1.4 110 chr2L 371422 intergenic not near genes chr2L 371477 intergenic not near genes chr2L 371532 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-385 4 chr2L 395801 395842 chr2L 395899 395940 7 96 5.5 2.5 4.0 1.4 139 chr2L 395801 intergenic CR43718 + chr2L 395870 intergenic CR43718 + chr2L 395940 intergenic CR43718 + chr2L_7_395001 chr2L_395001 RAL-385 5 chr2L 407939 407971 chr2L 408030 408072 7 100 2.5 2.0 2.2 2.2 133 chr2L 407939 3` UTR RpI135 + chr2L 408006 intergenic AP-2alpha -,RpI135 + chr2L 408072 3` UTR AP-2alpha - chr2L_7_405001 chr2L_405001 RAL-385 6 chr2L 839024 839048 chr2L 839128 839152 5 104 3.5 1.0 2.2 1.6 128 chr2L 839024 intron drongo - chr2L 839088 intron drongo - chr2L 839152 intron drongo - chr2L_5_835001 chr2L_835001 RAL-385 7 chr2L 849464 849482 chr2L 849575 849583 6 105 1.5 6.0 3.8 1.2 119 chr2L 849464 intron drongo - chr2L 849524 intron drongo - chr2L 849583 intron drongo - chr2L_6_845001 chr2L_845001 RAL-385 8 chr2L 877844 877872 chr2L 877931 877972 5 93 2.5 1.0 1.8 1.8 128 chr2L 877844 3` UTR,exon CG15824 -,ninaA + chr2L 877908 3` UTR,intron CG15824 -,ninaA + chr2L 877972 3` UTR,exon CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-385 9 chr2L 976858 976886 chr2L 984513 984542 roo 4 7656 3.0 1.5 2.2 1.2 7684 chr2L 976858 intergenic not near genes chr2L 980700 intergenic not near genes chr2L 984542 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-385 10 chr2L 1035548 1035588 chr2L 1035645 1035656 5 89 3.5 3.0 3.2 1.2 108 chr2L 1035548 intron IA-2 - chr2L 1035602 intron IA-2 - chr2L 1035656 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-385 11 chr2L 1042603 1042616 chr2L 1042700 1042706 5 96 2.0 0.0 1.0 2.5 103 chr2L 1042603 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042706 intron IA-2 - chr2L_5_1040001 chr2L_1040001 RAL-385 12 chr2L 1113994 1114036 chr2L 1114225 1114261 4 229 5.0 0.0 2.5 1.1 267 chr2L 1113994 3` UTR CG14340 + chr2L 1114128 3` UTR CG14340 + chr2L 1114261 intergenic CG14340 +,Pino - chr2L_4_1110001 chr2L_1110001 RAL-385 13 chr2L 1218389 1218414 chr2L 1218499 1218513 5 104 3.0 0.0 1.5 2.0 124 chr2L 1218389 intergenic not near genes chr2L 1218451 intergenic not near genes chr2L 1218513 intergenic not near genes chr2L_5_1215001 chr2L_1215001 RAL-385 14 chr2L 1220111 1220159 chr2L 1227597 1227645 blood 4 7485 2.5 2.5 2.5 1.1 7534 chr2L 1220111 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227645 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-385 15 chr2L 1322003 1322051 chr2L 1322112 1322159 4 108 1.0 0.5 0.8 2.2 156 chr2L 1322003 intergenic not near genes chr2L 1322081 intergenic not near genes chr2L 1322159 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-385 16 chr2L 1392554 1392600 chr2L 1392687 1392710 4 118 1.0 1.5 1.2 1.8 156 chr2L 1392554 intron lea - chr2L 1392632 intron lea - chr2L 1392710 exon lea - chr2L_4_1390001 chr2L_1390001 RAL-385 17 chr2L 1404221 1404240 chr2L 1406152 1406175 5 1934 10.5 2.5 6.5 0.7 1954 chr2L 1404221 intron lea - chr2L 1405198 intron lea - chr2L 1406175 intron lea - chr2L_5_1405001 chr2L_1405001 RAL-385 18 chr2L 1570678 1570708 chr2L 1573570 1573600 F-element 4 2890 2.0 1.5 1.8 1.4 2922 chr2L 1570678 intron haf + chr2L 1572139 intron haf + chr2L 1573600 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-385 19 chr2L 1678960 1678998 chr2L 1686445 1686481 blood 9 7480 2.0 2.5 2.2 2.8 7521 chr2L 1678960 intron chinmo + chr2L 1682720 intron chinmo + chr2L 1686481 intron chinmo + chr2L_9_1680001 chr2L_1680001 RAL-385 20 chr2L 1692070 1692099 chr2L 1692171 1692172 4 93 3.0 2.5 2.8 1.1 102 chr2L 1692070 intron chinmo + chr2L 1692121 intron chinmo + chr2L 1692172 intron chinmo + chr2L_4_1690001 chr2L_1690001 RAL-385 21 chr2L 1724788 1724837 chr2L 1724887 1724936 11 99 2.0 2.0 2.0 3.7 148 chr2L 1724788 3` UTR Eno - chr2L 1724862 3` UTR Eno - chr2L 1724936 3` UTR Eno - chr2L_11_1720001 chr2L_1720001 RAL-385 22 chr2L 1744799 1744831 chr2L 1744886 1744910 7 87 0.0 2.0 1.0 3.5 111 chr2L 1744799 intron CG17646 + chr2L 1744854 intron CG17646 + chr2L 1744910 intron CG17646 + chr2L_7_1740001 chr2L_1740001 RAL-385 23 chr2L 1850352 1850391 chr2L 1850452 1850491 5 90 0.5 4.0 2.2 1.6 139 chr2L 1850352 intron wry + chr2L 1850422 intron wry + chr2L 1850491 intron wry + chr2L_5_1850001 chr2L_1850001 RAL-385 24 chr2L 2007846 2007868 chr2L 2007974 2007996 4 127 1.5 6.0 3.8 0.8 150 chr2L 2007846 intergenic CR45712 + chr2L 2007921 intergenic CR45712 +,Nplp4 + chr2L 2007996 intergenic CR45712 +,Nplp4 + chr2L_4_2005001 chr2L_2005001 RAL-385 25 chr2L 2145730 2145776 chr2L 2145836 2145880 12 104 5.5 5.5 5.5 1.8 150 chr2L 2145730 3` UTR CG11723 - chr2L 2145805 3` UTR CG11723 - chr2L 2145880 3` UTR CG11723 - chr2L_12_2145001 chr2L_2145001 RAL-385 26 chr2L 2372343 2372359 chr2L 2372449 2372455 4 104 1.0 1.5 1.2 1.8 112 chr2L 2372343 intergenic CG3609 - chr2L 2372399 intergenic CG3609 - chr2L 2372455 3` UTR CG3609 - chr2L_4_2370001 chr2L_2370001 RAL-385 27 chr2L 2427367 2427400 chr2L 2427468 2427506 6 105 2.5 1.0 1.8 2.1 139 chr2L 2427367 3` UTR CR44912 - chr2L 2427436 3` UTR CR44912 - chr2L 2427506 3` UTR CR44912 - chr2L_6_2425001 chr2L_2425001 RAL-385 28 chr2L 2504214 2504224 chr2L 2504304 2504321 4 96 1.5 2.0 1.8 1.4 107 chr2L 2504214 intergenic not near genes chr2L 2504268 intergenic not near genes chr2L 2504321 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-385 29 chr2L 2565534 2565562 chr2L 2571627 2571655 297 6 6092 1.0 4.5 2.8 1.6 6121 chr2L 2565534 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571655 exon Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-385 30 chr2L 2713496 2713549 chr2L 2713615 2713627 11 106 2.0 1.5 1.8 3.9 131 chr2L 2713496 intron CG31690 + chr2L 2713562 intron CG31690 + chr2L 2713627 intron CG31690 + chr2L_11_2710001 chr2L_2710001 RAL-385 31 chr2L 2772592 2772621 chr2L 2779194 2779223 297 4 6602 2.5 4.5 3.5 0.9 6631 chr2L 2772592 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779223 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-385 32 chr2L 2885353 2885394 chr2L 2885450 2885490 5 92 5.0 3.0 4.0 1.0 137 chr2L 2885353 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885490 intron NTPase - chr2L_5_2885001 chr2L_2885001 RAL-385 33 chr2L 2887277 2887310 chr2L 2887413 2887435 6 134 2.5 5.5 4.0 1.2 158 chr2L 2887277 intron lilli + chr2L 2887356 intron lilli + chr2L 2887435 intron lilli + chr2L_6_2885001 chr2L_2885001 RAL-385 34 chr2L 3073014 3073058 chr2L 3078237 3078240 copia 8 5218 2.5 3.0 2.8 2.1 5226 chr2L 3073014 intron toc - chr2L 3075627 intron toc - chr2L 3078240 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-385 35 chr2L 3186467 3186498 chr2L 3186555 3186604 6 96 3.0 1.0 2.0 2.0 137 chr2L 3186467 intron CG34393 - chr2L 3186536 intron CG34393 - chr2L 3186604 intron CG34393 - chr2L_6_3185001 chr2L_3185001 RAL-385 36 chr2L 3192213 3192241 chr2L 3192320 3192366 6 122 1.0 1.5 1.2 2.7 153 chr2L 3192213 exon CG34393 - chr2L 3192290 intron CG34393 - chr2L 3192366 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-385 37 chr2L 3202720 3202771 chr2L 3210169 3210203 mdg1 5 7446 1.0 1.0 1.0 2.5 7483 chr2L 3202720 intergenic not near genes chr2L 3206462 intergenic not near genes chr2L 3210203 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-385 38 chr2L 3251473 3251500 chr2L 3259084 3259116 springer 5 7611 1.5 2.0 1.8 1.8 7643 chr2L 3251473 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259116 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-385 39 chr2L 3508328 3508371 chr2L 3508426 3508469 11 98 2.5 2.5 2.5 3.1 141 chr2L 3508328 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508469 intergenic CR45299 +,tim - chr2L_11_3505001 chr2L_3505001 RAL-385 40 chr2L 3540438 3540453 chr2L 3540539 3540559 4 105 4.0 4.5 4.2 0.8 121 chr2L 3540438 intron drm + chr2L 3540498 intron drm + chr2L 3540559 intron drm + chr2L_4_3540001 chr2L_3540001 RAL-385 41 chr2L 3634081 3634121 chr2L 3634183 3634223 8 102 6.5 3.5 5.0 1.3 142 chr2L 3634081 intron for - chr2L 3634152 intron for - chr2L 3634223 intron for - chr2L_8_3630001 chr2L_3630001 RAL-385 42 chr2L 3670716 3670763 chr2L 3670817 3670828 8 91 2.0 2.5 2.2 2.5 112 chr2L 3670716 intron CG34340 + chr2L 3670772 intron CG34340 + chr2L 3670828 intron CG34340 + chr2L_8_3670001 chr2L_3670001 RAL-385 43 chr2L 3819606 3819619 chr2L 3819702 3819714 4 96 0.0 3.0 1.5 1.6 108 chr2L 3819606 intergenic not near genes chr2L 3819660 intergenic not near genes chr2L 3819714 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-385 44 chr2L 3891883 3891927 chr2L 3891988 3892001 4 84 2.5 2.0 2.2 1.2 118 chr2L 3891883 intron capu - chr2L 3891942 intron capu - chr2L 3892001 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-385 45 chr2L 4159389 4159419 chr2L 4159609 4159629 7 218 1.0 0.5 0.8 3.9 240 chr2L 4159389 intergenic not near genes chr2L 4159509 intergenic not near genes chr2L 4159629 intergenic not near genes chr2L_7_4155001 chr2L_4155001 RAL-385 46 chr2L 4601688 4601724 chr2L 4609147 4609155 mdg1 4 7448 3.0 2.0 2.5 1.1 7467 chr2L 4601688 intron dp - chr2L 4605422 intron dp - chr2L 4609155 intron dp - chr2L_4_4605001 chr2L_4605001 RAL-385 47 chr2L 4661829 4661849 chr2L 4669429 4669449 opus 4 7598 1.5 4.5 3.0 1.0 7620 chr2L 4661829 intergenic not near genes chr2L 4665639 intergenic not near genes chr2L 4669449 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-385 48 chr2L 4748679 4748718 chr2L 4748778 4748817 6 96 1.0 2.5 1.8 2.1 138 chr2L 4748679 intron CG15630 - chr2L 4748748 intron CG15630 - chr2L 4748817 intron CG15630 - chr2L_6_4745001 chr2L_4745001 RAL-385 49 chr2L 4918148 4918198 chr2L 4923241 4923329 jockey 4 5110 4.0 0.0 2.0 1.3 5181 chr2L 4918148 intron hoe1 - chr2L 4920738 intron hoe1 - chr2L 4923329 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-385 50 chr2L 4996077 4996111 chr2L 4996173 4996208 5 97 2.0 3.0 2.5 1.4 131 chr2L 4996077 intron Rtnl1 - chr2L 4996142 intron Rtnl1 - chr2L 4996208 intron Rtnl1 - chr2L_5_4995001 chr2L_4995001 RAL-385 51 chr2L 5005944 5005963 chr2L 5006044 5006063 4 100 1.5 6.5 4.0 0.8 119 chr2L 5005944 intron Rtnl1 - chr2L 5006004 intron Rtnl1 - chr2L 5006063 intron Rtnl1 - chr2L_4_5005001 chr2L_5005001 RAL-385 52 chr2L 5117278 5117315 chr2L 5117380 5117404 7 96 1.0 1.5 1.2 3.2 126 chr2L 5117278 intron Msp300 + chr2L 5117341 intron Msp300 + chr2L 5117404 intron Msp300 + chr2L_7_5115001 chr2L_5115001 RAL-385 53 chr2L 5265761 5265791 chr2L 5265914 5265922 4 148 0.5 3.0 1.8 1.4 161 chr2L 5265761 intron,exon tkv -,Cyp4ac1 + chr2L 5265842 intron,3` UTR tkv -,Cyp4ac1 + chr2L 5265922 intron tkv - chr2L_4_5265001 chr2L_5265001 RAL-385 54 chr2L 5276710 5276723 chr2L 5276807 5276827 4 101 0.0 4.0 2.0 1.3 117 chr2L 5276710 exon Bsg25D - chr2L 5276768 intron Bsg25D - chr2L 5276827 intron Bsg25D - chr2L_4_5275001 chr2L_5275001 RAL-385 55 chr2L 5401604 5401610 chr2L 5401700 5401706 5 96 3.5 0.0 1.8 1.8 102 chr2L 5401604 intergenic not near genes chr2L 5401655 intergenic not near genes chr2L 5401706 intergenic not near genes chr2L_5_5400001 chr2L_5400001 RAL-385 56 chr2L 5501427 5501469 chr2L 5501523 5501565 6 95 2.5 1.5 2.0 2.0 138 chr2L 5501427 intergenic not near genes chr2L 5501496 intergenic not near genes chr2L 5501565 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-385 57 chr2L 5676882 5676903 chr2L 5676995 5677019 7 115 0.0 2.5 1.2 3.2 137 chr2L 5676882 intergenic not near genes chr2L 5676950 intergenic not near genes chr2L 5677019 intergenic not near genes chr2L_7_5675001 chr2L_5675001 RAL-385 58 chr2L 5720248 5720289 chr2L 5720355 5720395 7 99 3.0 5.0 4.0 1.4 147 chr2L 5720248 intron CG11149 - chr2L 5720322 intron CG11149 - chr2L 5720395 intron CG11149 - chr2L_7_5720001 chr2L_5720001 RAL-385 59 chr2L 5762433 5762475 chr2L 5762538 5762580 4 104 2.0 3.0 2.5 1.1 147 chr2L 5762433 intergenic CG11030 +,obst-E - chr2L 5762506 intergenic obst-E -,CG11030 + chr2L 5762580 3` UTR obst-E - chr2L_4_5760001 chr2L_5760001 RAL-385 60 chr2L 5827708 5827739 chr2L 5836736 5836751 roo 6 9021 0.5 1.5 1.0 3.0 9043 chr2L 5827708 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836751 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-385 61 chr2L 6002421 6002442 chr2L 6002526 6002548 4 104 5.0 6.0 5.5 0.6 127 chr2L 6002421 3` UTR Tsp26A + chr2L 6002484 3` UTR Tsp26A + chr2L 6002548 3` UTR Tsp26A + chr2L_4_6000001 chr2L_6000001 RAL-385 62 chr2L 6002444 6002468 chr2L 6002525 6002568 5 100 3.5 6.0 4.8 0.9 124 chr2L 6002444 3` UTR Tsp26A + chr2L 6002506 3` UTR Tsp26A + chr2L 6002568 3` UTR Tsp26A + chr2L_5_6000001 chr2L_6000001 RAL-385 63 chr2L 6100820 6100868 chr2L 6100924 6100972 14 102 2.0 0.5 1.2 6.4 152 chr2L 6100820 intron stai + chr2L 6100896 intron stai + chr2L 6100972 intron stai + chr2L_14_6100001 chr2L_6100001 RAL-385 64 chr2L 6130749 6130792 chr2L 6130854 6130896 6 104 1.0 0.0 0.5 4.0 147 chr2L 6130749 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130822 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130896 intergenic CG9222 +,CG42730 -,tectonic - chr2L_6_6130001 chr2L_6130001 RAL-385 65 chr2L 6227701 6227723 chr2L 6227805 6227827 5 103 4.5 0.5 2.5 1.4 126 chr2L 6227701 intergenic not near genes chr2L 6227764 intergenic not near genes chr2L 6227827 intergenic not near genes chr2L_5_6225001 chr2L_6225001 RAL-385 66 chr2L 6426838 6426886 chr2L 6445118 6445143 roo 11 18271 3.5 1.0 2.2 3.4 18305 chr2L 6426838 3` UTR CG9527 - chr2L 6435990 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-385 67 chr2L 6544363 6544391 chr2L 6544475 6544503 5 111 3.0 3.0 3.0 1.2 140 chr2L 6544363 intron eya - chr2L 6544433 intron eya - chr2L 6544503 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-385 68 chr2L 6598123 6598149 chr2L 6599074 6599125 5 957 0.5 2.0 1.2 2.3 1002 chr2L 6598123 intron CG11319 - chr2L 6598624 intron CG11319 - chr2L 6599125 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-385 69 chr2L 6836487 6836534 chr2L 6836587 6836632 7 95 3.5 6.0 4.8 1.2 145 chr2L 6836487 intron sens-2 + chr2L 6836560 intron sens-2 + chr2L 6836632 intron sens-2 + chr2L_7_6835001 chr2L_6835001 RAL-385 70 chr2L 6850360 6850401 chr2L 6850463 6850504 7 103 5.5 1.5 3.5 1.6 144 chr2L 6850360 intergenic not near genes chr2L 6850432 intergenic not near genes chr2L 6850504 intergenic not near genes chr2L_7_6850001 chr2L_6850001 RAL-385 71 chr2L 6851494 6851532 chr2L 6851587 6851628 5 95 1.0 1.5 1.2 2.3 134 chr2L 6851494 intergenic not near genes chr2L 6851561 intergenic not near genes chr2L 6851628 intergenic not near genes chr2L_5_6850001 chr2L_6850001 RAL-385 72 chr2L 6949117 6949135 chr2L 6949189 6949226 5 93 2.5 0.5 1.5 2.0 109 chr2L 6949117 intergenic Gas41 -,ihog - chr2L 6949172 intergenic Gas41 -,ihog - chr2L 6949226 intergenic Gas41 -,ihog - chr2L_5_6945001 chr2L_6945001 RAL-385 73 chr2L 7082875 7082894 chr2L 7082982 7083001 5 107 2.5 3.5 3.0 1.2 126 chr2L 7082875 intron Pvf2 - chr2L 7082938 intron Pvf2 - chr2L 7083001 intron Pvf2 - chr2L_5_7080001 chr2L_7080001 RAL-385 74 chr2L 7126841 7126856 chr2L 7126940 7126944 5 97 5.0 0.0 2.5 1.4 103 chr2L 7126841 intron Pvf3 - chr2L 7126892 intron Pvf3 - chr2L 7126944 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-385 75 chr2L 7254517 7254547 chr2L 7254615 7254645 8 96 0.0 4.5 2.2 2.5 128 chr2L 7254517 intergenic not near genes chr2L 7254581 intergenic not near genes chr2L 7254645 intergenic not near genes chr2L_8_7250001 chr2L_7250001 RAL-385 76 chr2L 7493405 7493414 chr2L 7493511 7493513 5 104 0.0 2.5 1.2 2.3 108 chr2L 7493405 intron Ziz - chr2L 7493459 intron Ziz - chr2L 7493513 intron Ziz - chr2L_5_7490001 chr2L_7490001 RAL-385 77 chr2L 7493654 7493687 chr2L 7493884 7493918 7 228 2.5 0.0 1.2 3.2 264 chr2L 7493654 intron Ziz - chr2L 7493786 intron Ziz - chr2L 7493918 intron Ziz - chr2L_7_7490001 chr2L_7490001 RAL-385 78 chr2L 7959022 7959056 chr2L 7960453 7960454 pogo 7 1422 5.0 2.5 3.8 1.5 1432 chr2L 7959022 intron Snoo - chr2L 7959738 intron Snoo - chr2L 7960454 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-385 79 chr2L 7977071 7977113 chr2L 7984066 7984088 297 5 6987 0.5 0.5 0.5 3.3 7017 chr2L 7977071 intron Snoo - chr2L 7980580 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-385 80 chr2L 8003008 8003117 chr2L 8003111 8003223 4 104 0.0 0.0 0.0 4.0 215 chr2L 8003008 intron Wwox - chr2L 8003116 intron Wwox - chr2L 8003223 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-385 81 chr2L 8013601 8013613 chr2L 8018825 8018837 copia 4 5224 4.0 0.0 2.0 1.3 5236 chr2L 8013601 intron Tg + chr2L 8016219 intron Tg + chr2L 8018837 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-385 82 chr2L 8018815 8018835 chr2L 8023604 8023638 Doc 8 4802 0.0 2.5 1.2 3.6 4823 chr2L 8018815 intron Tg + chr2L 8021226 intron Tg + chr2L 8023638 intron Tg + chr2L_8_8020001 chr2L_8020001 RAL-385 83 chr2L 8150413 8150444 chr2L 8150655 8150691 5 243 2.0 2.0 2.0 1.7 278 chr2L 8150413 intron,intron CG8552 -,CG43394 + chr2L 8150552 intron,intron CG8552 -,CG43394 + chr2L 8150691 intron,intron CG8552 -,CG43394 + chr2L_5_8150001 chr2L_8150001 RAL-385 84 chr2L 8232020 8232024 chr2L 8232118 8232122 4 98 0.0 6.0 3.0 1.0 102 chr2L 8232020 intron Pvr - chr2L 8232071 intron Pvr - chr2L 8232122 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-385 85 chr2L 8351538 8351587 chr2L 8351635 8351669 4 93 0.0 1.5 0.8 2.2 131 chr2L 8351538 intergenic CG7778 + chr2L 8351604 intergenic CG7778 + chr2L 8351669 intergenic not near genes chr2L_4_8350001 chr2L_8350001 RAL-385 86 chr2L 8452427 8452444 chr2L 8461618 8461634 roo 4 9190 1.0 1.5 1.2 1.8 9207 chr2L 8452427 intron fu12 - chr2L 8457030 intron fu12 - chr2L 8461634 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-385 87 chr2L 8510119 8510165 chr2L 8510226 8510274 4 108 0.5 0.5 0.5 2.7 155 chr2L 8510119 exon CG13096 - chr2L 8510196 intron CG13096 - chr2L 8510274 intron CG13096 - chr2L_4_8510001 chr2L_8510001 RAL-385 88 chr2L 8554346 8554372 chr2L 8554462 8554488 8 116 1.5 1.0 1.2 3.6 142 chr2L 8554346 intron Sema-1a + chr2L 8554417 intron Sema-1a + chr2L 8554488 intron Sema-1a + chr2L_8_8550001 chr2L_8550001 RAL-385 89 chr2L 8578452 8578452 chr2L 16071771 16071771 4 7493319 5.5 3.5 4.5 0.7 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_12325001 chr2L_12325001 RAL-385 90 chr2L 8625487 8625521 chr2L 8625628 8625666 4 143 2.0 0.0 1.0 2.0 179 chr2L 8625487 intron Sema-1a + chr2L 8625576 intron Sema-1a + chr2L 8625666 intron Sema-1a + chr2L_4_8625001 chr2L_8625001 RAL-385 91 chr2L 8689682 8689735 chr2L 8689797 8689845 5 114 0.0 2.5 1.2 2.3 163 chr2L 8689682 intron Hnf4 - chr2L 8689764 intron Hnf4 - chr2L 8689845 exon Hnf4 - chr2L_5_8685001 chr2L_8685001 RAL-385 92 chr2L 8698313 8698335 chr2L 8698466 8698494 7 157 2.5 0.5 1.5 2.8 181 chr2L 8698313 intron Hnf4 - chr2L 8698404 intron Hnf4 - chr2L 8698494 intron Hnf4 - chr2L_7_8695001 chr2L_8695001 RAL-385 93 chr2L 8723099 8723128 chr2L 8731496 8731516 Tirant 4 8395 1.0 0.5 0.8 2.2 8417 chr2L 8723099 intron raw - chr2L 8727308 intron raw - chr2L 8731516 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-385 94 chr2L 8784703 8784722 chr2L 8784824 8784846 8 129 1.5 3.0 2.2 2.5 143 chr2L 8784703 intergenic not near genes chr2L 8784774 intergenic not near genes chr2L 8784846 intergenic not near genes chr2L_8_8780001 chr2L_8780001 RAL-385 95 chr2L 8786549 8786574 chr2L 8786656 8786667 4 101 1.0 4.5 2.8 1.1 118 chr2L 8786549 intergenic not near genes chr2L 8786608 intergenic not near genes chr2L 8786667 intergenic not near genes chr2L_4_8785001 chr2L_8785001 RAL-385 96 chr2L 8799779 8799831 chr2L 8799915 8799932 10 127 2.5 2.0 2.2 3.1 153 chr2L 8799779 intergenic not near genes chr2L 8799856 intergenic not near genes chr2L 8799932 intergenic not near genes chr2L_10_8795001 chr2L_8795001 RAL-385 97 chr2L 9000282 9000306 chr2L 9007795 9007816 roo 4 7516 2.5 4.5 3.5 0.9 7534 chr2L 9000282 intergenic Try29F + chr2L 9004049 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-385 98 chr2L 9217979 9217994 chr2L 9222786 9222797 Doc 5 4805 1.5 2.0 1.8 1.8 4818 chr2L 9217979 intron tai + chr2L 9220388 intron tai + chr2L 9222797 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-385 99 chr2L 9297357 9297402 chr2L 9297454 9297499 8 95 2.5 2.5 2.5 2.3 142 chr2L 9297357 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297499 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-385 100 chr2L 9300671 9300683 chr2L 9300787 9300797 4 116 3.0 0.0 1.5 1.6 126 chr2L 9300671 3` UTR Ggamma30A + chr2L 9300734 3` UTR Ggamma30A + chr2L 9300797 3` UTR Ggamma30A + chr2L_4_9300001 chr2L_9300001 RAL-385 101 chr2L 9304331 9304513 chr2L 9304435 9304604 18 97 2.0 3.0 2.5 5.1 273 chr2L 9304331 intergenic CR42844 - chr2L 9304468 3` UTR CR42844 - chr2L 9304604 3` UTR CR42844 - chr2L_18_9300001 chr2L_9300001 RAL-385 102 chr2L 9375816 9375866 chr2L 9377242 9377293 8 1423 1.0 1.5 1.2 3.6 1477 chr2L 9375816 intron Shawl - chr2L 9376554 intron Shawl - chr2L 9377293 intron Shawl - chr2L_8_9375001 chr2L_9375001 RAL-385 103 chr2L 9385122 9385149 chr2L 9385216 9385259 8 104 1.5 6.0 3.8 1.7 137 chr2L 9385122 intron Shawl - chr2L 9385190 intron Shawl - chr2L 9385259 intron Shawl - chr2L_8_9385001 chr2L_9385001 RAL-385 104 chr2L 9387237 9387275 chr2L 9387355 9387393 5 116 3.0 1.5 2.2 1.6 156 chr2L 9387237 intron Shawl - chr2L 9387315 intron Shawl - chr2L 9387393 intron,5` UTR Shawl -,Aldh + chr2L_5_9385001 chr2L_9385001 RAL-385 105 chr2L 9391518 9391679 chr2L 9391700 9391782 13 177 1.5 1.5 1.5 5.2 264 chr2L 9391518 intron,3` UTR Shawl -,Aldh + chr2L 9391650 intron Shawl - chr2L 9391782 intron Shawl - chr2L_13_9390001 chr2L_9390001 RAL-385 106 chr2L 9393480 9393529 chr2L 9396467 9396516 jockey 10 2981 2.0 4.5 3.2 2.4 3036 chr2L 9393480 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396516 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-385 107 chr2L 9470087 9470120 chr2L 9470186 9470219 4 99 2.0 3.5 2.8 1.1 132 chr2L 9470087 intergenic CR43769 + chr2L 9470153 intergenic CR43769 + chr2L 9470219 intergenic CR43769 + chr2L_4_9470001 chr2L_9470001 RAL-385 108 chr2L 9506352 9506372 chr2L 9506454 9506474 5 102 1.0 2.5 1.8 1.8 122 chr2L 9506352 intron CG33298 + chr2L 9506413 intron CG33298 + chr2L 9506474 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-385 109 chr2L 9633830 9633854 chr2L 9633969 9634001 4 144 0.5 1.5 1.0 2.0 171 chr2L 9633830 intergenic Apoltp + chr2L 9633916 intergenic Apoltp + chr2L 9634001 intergenic Apoltp + chr2L_4_9630001 chr2L_9630001 RAL-385 110 chr2L 9683674 9683722 chr2L 9683770 9683792 6 92 2.0 1.5 1.8 2.1 118 chr2L 9683674 3` UTR Pka-C1 - chr2L 9683733 3` UTR Pka-C1 - chr2L 9683792 3` UTR Pka-C1 - chr2L_6_9680001 chr2L_9680001 RAL-385 111 chr2L 9730959 9731000 chr2L 9731062 9731103 6 98 4.5 3.0 3.8 1.2 144 chr2L 9730959 intron Nckx30C - chr2L 9731031 intron Nckx30C - chr2L 9731103 intron Nckx30C - chr2L_6_9730001 chr2L_9730001 RAL-385 112 chr2L 9892494 9892532 chr2L 9892586 9892623 4 94 2.5 1.5 2.0 1.3 129 chr2L 9892494 intron mtDNA-helicase - chr2L 9892558 intron mtDNA-helicase - chr2L 9892623 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-385 113 chr2L 9973730 9973756 chr2L 9980843 9980895 HMS-Beagle 5 7127 0.5 1.5 1.0 2.5 7165 chr2L 9973730 intergenic not near genes chr2L 9977312 intergenic not near genes chr2L 9980895 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-385 114 chr2L 9982198 9982232 chr2L 9982321 9982354 8 123 0.0 2.0 1.0 4.0 156 chr2L 9982198 intergenic not near genes chr2L 9982276 intergenic not near genes chr2L 9982354 intergenic not near genes chr2L_8_9980001 chr2L_9980001 RAL-385 115 chr2L 10078106 10078160 chr2L 10078282 10078294 7 167 4.0 1.5 2.8 1.8 188 chr2L 10078106 intron CG44153 - chr2L 10078200 intron CG44153 - chr2L 10078294 intron CG44153 - chr2L_7_10075001 chr2L_10075001 RAL-385 116 chr2L 10209830 10209860 chr2L 10209927 10209935 4 92 2.0 0.5 1.2 1.8 105 chr2L 10209830 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209882 3` UTR CG5727 - chr2L 10209935 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-385 117 chr2L 10258416 10258437 chr2L 10258521 10258532 7 102 1.0 2.0 1.5 2.8 116 chr2L 10258416 intron Pten - chr2L 10258474 intron Pten - chr2L 10258532 intron Pten - chr2L_7_10255001 chr2L_10255001 RAL-385 118 chr2L 10447078 10447096 chr2L 10447208 10447216 4 128 0.0 3.0 1.5 1.6 138 chr2L 10447078 intron loh + chr2L 10447147 intron loh + chr2L 10447216 intron loh + chr2L_4_10445001 chr2L_10445001 RAL-385 119 chr2L 10495295 10495447 chr2L 10495392 10495553 4 100 0.0 0.0 0.0 4.0 258 chr2L 10495295 intron Myo31DF - chr2L 10495424 intron Myo31DF - chr2L 10495553 intron Myo31DF - chr2L_4_10495001 chr2L_10495001 RAL-385 120 chr2L 10515343 10515380 chr2L 10515456 10515493 8 113 3.5 4.0 3.8 1.7 150 chr2L 10515343 intron,intron CG45083 -,Fatp - chr2L 10515418 intron,intron CG45083 -,Fatp - chr2L 10515493 intron,intron CG45083 -,Fatp - chr2L_8_10515001 chr2L_10515001 RAL-385 121 chr2L 10572682 10572735 chr2L 10572783 10572834 7 97 0.5 1.0 0.8 3.9 152 chr2L 10572682 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572834 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-385 122 chr2L 10592831 10592865 chr2L 10600512 10600530 opus 4 7678 0.0 3.5 1.8 1.4 7699 chr2L 10592831 intron Trim9 + chr2L 10596680 intron Trim9 + chr2L 10600530 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-385 123 chr2L 10685614 10685622 chr2L 10685692 10685697 4 85 1.5 5.5 3.5 0.9 83 chr2L 10685614 intergenic not near genes chr2L 10685656 intergenic CG7296 - chr2L 10685697 intergenic CG7296 - chr2L_4_10685001 chr2L_10685001 RAL-385 124 chr2L 10688521 10688560 chr2L 10688617 10688656 8 96 2.5 4.5 3.5 1.8 135 chr2L 10688521 intergenic CG7294 - chr2L 10688588 intergenic CG7294 - chr2L 10688656 intergenic CG7294 - chr2L_8_10685001 chr2L_10685001 RAL-385 125 chr2L 10703300 10703307 chr2L 10703406 10703415 5 108 9.0 4.0 6.5 0.7 115 chr2L 10703300 intron Lip2 - chr2L 10703358 intron Lip2 - chr2L 10703415 intron Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-385 126 chr2L 10770674 10770693 chr2L 10770771 10770790 5 92 1.5 0.0 0.8 2.8 116 chr2L 10770674 intergenic CG17127 + chr2L 10770732 intergenic CG17127 + chr2L 10770790 intergenic CG17127 + chr2L_5_10770001 chr2L_10770001 RAL-385 127 chr2L 10850150 10850178 chr2L 10850265 10850277 5 112 2.5 2.0 2.2 1.6 127 chr2L 10850150 5` UTR,5` UTR porin -,CG43129 + chr2L 10850214 5` UTR,5` UTR porin -,CG43129 + chr2L 10850277 5` UTR,intron porin -,CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-385 128 chr2L 11298822 11298855 chr2L 11298919 11298952 7 96 0.5 1.0 0.8 3.9 130 chr2L 11298822 intergenic not near genes chr2L 11298887 intergenic not near genes chr2L 11298952 intergenic not near genes chr2L_7_11295001 chr2L_11295001 RAL-385 129 chr2L 11357958 11358005 chr2L 11358056 11358103 8 98 5.5 1.5 3.5 1.8 145 chr2L 11357958 intergenic not near genes chr2L 11358030 intergenic not near genes chr2L 11358103 intergenic not near genes chr2L_8_11355001 chr2L_11355001 RAL-385 130 chr2L 11404777 11404808 chr2L 11404863 11404904 6 89 0.0 2.0 1.0 3.0 127 chr2L 11404777 intergenic not near genes chr2L 11404840 intergenic not near genes chr2L 11404904 intergenic not near genes chr2L_6_11400001 chr2L_11400001 RAL-385 131 chr2L 11458926 11458974 chr2L 11459062 11459110 5 136 0.5 0.5 0.5 3.3 184 chr2L 11458926 intergenic not near genes chr2L 11459018 intergenic not near genes chr2L 11459110 intergenic not near genes chr2L_5_11455001 chr2L_11455001 RAL-385 132 chr2L 11713486 11713540 chr2L 11720974 11721012 blood 4 7484 0.0 2.0 1.0 2.0 7526 chr2L 11713486 intergenic not near genes chr2L 11717249 intergenic not near genes chr2L 11721012 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-385 133 chr2L 11886437 11886447 chr2L 11886555 11886565 4 118 10.0 1.5 5.8 0.6 128 chr2L 11886437 intron Pde1c - chr2L 11886501 intron Pde1c - chr2L 11886565 intron Pde1c - chr2L_4_11885001 chr2L_11885001 RAL-385 134 chr2L 11889412 11889441 chr2L 11889775 11889804 6 358 1.5 1.5 1.5 2.4 392 chr2L 11889412 intron Pde1c - chr2L 11889608 intron Pde1c - chr2L 11889804 intron Pde1c - chr2L_6_11885001 chr2L_11885001 RAL-385 135 chr2L 11892526 11892557 chr2L 11892635 11892666 4 106 0.5 1.5 1.0 2.0 140 chr2L 11892526 intron Pde1c - chr2L 11892596 intron Pde1c - chr2L 11892666 intron Pde1c - chr2L_4_11890001 chr2L_11890001 RAL-385 136 chr2L 11951962 11951996 chr2L 11952063 11952104 9 103 0.5 1.5 1.0 4.5 142 chr2L 11951962 intergenic CR43314 - chr2L 11952033 intergenic CR43314 - chr2L 11952104 intergenic CR43314 - chr2L_9_11950001 chr2L_11950001 RAL-385 137 chr2L 12067322 12067356 chr2L 12074394 12074428 297 11 7070 4.0 2.5 3.2 2.6 7106 chr2L 12067322 intergenic not near genes chr2L 12070875 intergenic not near genes chr2L 12074428 intergenic not near genes chr2L_11_12070001 chr2L_12070001 RAL-385 138 chr2L 12082115 12082141 chr2L 12082228 12082254 7 111 1.0 4.0 2.5 2.0 139 chr2L 12082115 intergenic CR44590 - chr2L 12082184 intergenic CR44590 - chr2L 12082254 intergenic CR44590 - chr2L_7_12080001 chr2L_12080001 RAL-385 139 chr2L 12082144 12082156 chr2L 12082222 12082269 6 100 1.0 2.5 1.8 2.1 125 chr2L 12082144 intergenic CR44590 - chr2L 12082206 intergenic CR44590 - chr2L 12082269 intergenic CR44590 - chr2L_6_12080001 chr2L_12080001 RAL-385 140 chr2L 12192342 12192357 chr2L 12192487 12192502 4 142 2.0 1.5 1.8 1.4 160 chr2L 12192342 intron aret + chr2L 12192422 intron aret + chr2L 12192502 intron aret + chr2L_4_12190001 chr2L_12190001 RAL-385 141 chr2L 12232624 12232633 chr2L 12232736 12232746 4 113 0.0 2.0 1.0 2.0 122 chr2L 12232624 intron aret + chr2L 12232685 intron aret + chr2L 12232746 intron aret + chr2L_4_12230001 chr2L_12230001 RAL-385 142 chr2L 12272165 12272190 chr2L 12272261 12272284 7 94 0.5 7.5 4.0 1.4 119 chr2L 12272165 intron aret + chr2L 12272224 intron aret + chr2L 12272284 intron aret + chr2L_7_12270001 chr2L_12270001 RAL-385 143 chr2L 12394985 12394998 chr2L 12395059 12395130 5 119 4.5 0.0 2.2 1.6 145 chr2L 12394985 intron bru-2 + chr2L 12395058 intron bru-2 + chr2L 12395130 intron bru-2 + chr2L_5_12395001 chr2L_12395001 RAL-385 144 chr2L 12487879 12487917 chr2L 12487979 12488018 5 94 1.5 4.5 3.0 1.2 139 chr2L 12487879 intron bun - chr2L 12487948 intron bun - chr2L 12488018 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-385 145 chr2L 12739166 12739198 chr2L 12743955 12743999 Doc 8 4793 1.5 1.0 1.2 3.6 4833 chr2L 12739166 exon MRP + chr2L 12741582 intron MRP + chr2L 12743999 exon MRP + chr2L_8_12740001 chr2L_12740001 RAL-385 146 chr2L 12751306 12751327 chr2L 12751392 12751395 4 82 1.0 0.5 0.8 2.2 89 chr2L 12751306 intergenic not near genes chr2L 12751350 intergenic not near genes chr2L 12751395 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-385 147 chr2L 12760239 12760251 chr2L 12760342 12760367 6 114 4.5 3.5 4.0 1.2 128 chr2L 12760239 intergenic CG15483 - chr2L 12760303 intergenic CG15483 - chr2L 12760367 3` UTR CG15483 - chr2L_6_12760001 chr2L_12760001 RAL-385 148 chr2L 12791591 12791630 chr2L 12795285 12795325 F-element 7 3682 1.0 3.5 2.2 2.2 3734 chr2L 12791591 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795325 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-385 149 chr2L 12835533 12835579 chr2L 12835662 12835698 4 126 1.0 1.5 1.2 1.8 165 chr2L 12835533 intergenic not near genes chr2L 12835616 intergenic not near genes chr2L 12835698 intergenic not near genes chr2L_4_12835001 chr2L_12835001 RAL-385 150 chr2L 12848413 12848423 chr2L 12848525 12848535 4 112 2.0 2.5 2.2 1.2 122 chr2L 12848413 intergenic not near genes chr2L 12848474 intergenic not near genes chr2L 12848535 intergenic not near genes chr2L_4_12845001 chr2L_12845001 RAL-385 151 chr2L 12905474 12905507 chr2L 12905570 12905611 6 101 0.0 2.5 1.2 2.7 137 chr2L 12905474 intergenic not near genes chr2L 12905542 intergenic not near genes chr2L 12905611 intergenic not near genes chr2L_6_12905001 chr2L_12905001 RAL-385 152 chr2L 12933845 12933878 chr2L 12941316 12941353 blood 4 7476 1.0 0.5 0.8 2.2 7508 chr2L 12933845 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941353 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-385 153 chr2L 13125727 13125784 chr2L 13125824 13125841 8 83 2.0 1.0 1.5 3.2 114 chr2L 13125727 intergenic not near genes chr2L 13125784 intergenic not near genes chr2L 13125841 intergenic not near genes chr2L_8_13125001 chr2L_13125001 RAL-385 154 chr2L 13328538 13328570 chr2L 13328920 13328955 8 383 2.5 3.0 2.8 2.1 417 chr2L 13328538 intron CG43778 - chr2L 13328746 intron CG43778 - chr2L 13328955 intron CG43778 - chr2L_8_13325001 chr2L_13325001 RAL-385 155 chr2L 13398697 13398738 chr2L 13398797 13398838 6 100 4.0 3.5 3.8 1.2 141 chr2L 13398697 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398768 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398838 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_6_13395001 chr2L_13395001 RAL-385 156 chr2L 13405629 13405681 chr2L 13410445 13410451 Doc 6 4802 2.5 4.5 3.5 1.3 4822 chr2L 13405629 exon CG7110 + chr2L 13408040 intron CG7110 + chr2L 13410451 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-385 157 chr2L 13522111 13522150 chr2L 13527649 13527688 Transpac 11 5538 2.0 2.5 2.2 3.4 5577 chr2L 13522111 intron B4 - chr2L 13524900 intron B4 - chr2L 13527688 intron B4 - chr2L_11_13520001 chr2L_13520001 RAL-385 158 chr2L 13606116 13606155 chr2L 13606218 13606233 7 102 2.0 4.0 3.0 1.8 117 chr2L 13606116 intron kuz + chr2L 13606174 intron kuz + chr2L 13606233 intron kuz + chr2L_7_13605001 chr2L_13605001 RAL-385 159 chr2L 13800165 13800201 chr2L 13800278 13800325 4 121 2.5 3.0 2.8 1.1 160 chr2L 13800165 intergenic Sec71 + chr2L 13800245 intergenic not near genes chr2L 13800325 intergenic not near genes chr2L_4_13800001 chr2L_13800001 RAL-385 160 chr2L 13853078 13853118 chr2L 13862238 13862285 roo 4 9167 2.0 0.0 1.0 2.0 9207 chr2L 13853078 intron CenG1A + chr2L 13857682 intron CenG1A + chr2L 13862285 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-385 161 chr2L 14029208 14029245 chr2L 14029309 14029346 7 99 4.0 2.5 3.2 1.7 138 chr2L 14029208 exon CG4500 + chr2L 14029277 3` UTR,3` UTR CG4500 +,CG18095 - chr2L 14029346 3` UTR,3` UTR CG4500 +,CG18095 - chr2L_7_14025001 chr2L_14025001 RAL-385 162 chr2L 14396179 14396232 chr2L 14398955 14398994 9 2770 8.5 10.0 9.2 0.9 2815 chr2L 14396179 intron elB - chr2L 14397586 intron elB - chr2L 14398994 intron elB - chr2L_9_14395001 chr2L_14395001 RAL-385 163 chr2L 14396028 14396079 chr2L 14399125 14399169 7 3093 17.5 14.5 16.0 0.4 3141 chr2L 14396028 intron elB - chr2L 14397598 intron elB - chr2L 14399169 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-385 164 chr2L 14588365 14588419 chr2L 14588539 14588552 7 163 4.5 1.0 2.8 1.8 187 chr2L 14588365 intergenic CG42680 - chr2L 14588458 intergenic CG42680 - chr2L 14588552 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-385 165 chr2L 14641396 14641432 chr2L 14641482 14641525 6 89 2.0 0.5 1.2 2.7 129 chr2L 14641396 intron osp - chr2L 14641460 intron osp - chr2L 14641525 intron osp - chr2L_6_14640001 chr2L_14640001 RAL-385 166 chr2L 14715525 14715567 chr2L 14715628 14715678 6 100 1.5 2.5 2.0 2.0 153 chr2L 14715525 intergenic not near genes chr2L 14715602 intergenic not near genes chr2L 14715678 intergenic not near genes chr2L_6_14715001 chr2L_14715001 RAL-385 167 chr2L 14840961 14840998 chr2L 14841068 14841105 4 107 3.0 1.5 2.2 1.2 144 chr2L 14840961 3` UTR CR43805 - chr2L 14841033 3` UTR CR43805 - chr2L 14841105 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-385 168 chr2L 14982149 14982272 chr2L 14982276 14982378 5 110 0.0 0.0 0.0 5.0 229 chr2L 14982149 intron mol - chr2L 14982264 intron mol - chr2L 14982378 intron mol - chr2L_5_14980001 chr2L_14980001 RAL-385 169 chr2L 14984377 14984398 chr2L 14991983 14992016 opus 6 7611 2.0 2.0 2.0 2.0 7639 chr2L 14984377 intron mol - chr2L 14988196 intron mol - chr2L 14992016 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-385 170 chr2L 15018592 15018623 chr2L 15018844 15018886 15 259 3.0 2.0 2.5 4.3 294 chr2L 15018592 intron GABA-B-R1 + chr2L 15018739 intron GABA-B-R1 + chr2L 15018886 intron GABA-B-R1 + chr2L_15_15015001 chr2L_15015001 RAL-385 171 chr2L 15044697 15044720 chr2L 15044793 15044816 5 96 1.0 0.5 0.8 2.8 119 chr2L 15044697 intergenic ck - chr2L 15044756 intergenic ck - chr2L 15044816 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-385 172 chr2L 15056695 15056716 chr2L 15056804 15056825 5 109 5.0 1.5 3.2 1.2 130 chr2L 15056695 intron ck - chr2L 15056760 intron ck - chr2L 15056825 intron ck - chr2L_5_15055001 chr2L_15055001 RAL-385 173 chr2L 15056718 15056740 chr2L 15056802 15056825 7 100 1.5 1.0 1.2 3.2 107 chr2L 15056718 intron ck - chr2L 15056772 intron ck - chr2L 15056825 intron ck - chr2L_7_15055001 chr2L_15055001 RAL-385 174 chr2L 15122754 15122805 chr2L 15122854 15122905 8 95 1.0 0.5 0.8 4.4 151 chr2L 15122754 intergenic not near genes chr2L 15122830 intergenic not near genes chr2L 15122905 intergenic not near genes chr2L_8_15120001 chr2L_15120001 RAL-385 175 chr2L 15375801 15375829 chr2L 15375933 15375956 5 131 2.5 4.0 3.2 1.2 155 chr2L 15375801 intergenic not near genes chr2L 15375878 intergenic not near genes chr2L 15375956 intergenic not near genes chr2L_5_15375001 chr2L_15375001 RAL-385 176 chr2L 15443319 15443355 chr2L 15443423 15443459 4 98 1.5 2.0 1.8 1.4 140 chr2L 15443319 intergenic not near genes chr2L 15443389 intergenic not near genes chr2L 15443459 intergenic not near genes chr2L_4_15440001 chr2L_15440001 RAL-385 177 chr2L 15446040 15446081 chr2L 15453518 15453570 blood 6 7487 2.5 1.0 1.8 2.1 7530 chr2L 15446040 intergenic not near genes chr2L 15449805 intergenic not near genes chr2L 15453570 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-385 178 chr2L 15499891 15499945 chr2L 15499999 15500052 5 105 0.0 1.5 0.8 2.8 161 chr2L 15499891 intron lace + chr2L 15499972 intron lace + chr2L 15500052 intron lace + chr2L_5_15495001 chr2L_15495001 RAL-385 179 chr2L 15521615 15521652 chr2L 15521718 15521755 6 100 4.0 1.0 2.5 1.7 140 chr2L 15521615 intergenic CR43761 + chr2L 15521685 intergenic CR43761 + chr2L 15521755 intergenic CR43761 + chr2L_6_15520001 chr2L_15520001 RAL-385 180 chr2L 15586390 15586429 chr2L 15593462 15593500 297 4 7072 4.5 1.0 2.8 1.1 7110 chr2L 15586390 intergenic not near genes chr2L 15589945 intergenic not near genes chr2L 15593500 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-385 181 chr2L 15624927 15624950 chr2L 15625043 15625050 5 111 4.0 5.5 4.8 0.9 123 chr2L 15624927 intergenic not near genes chr2L 15624988 intergenic not near genes chr2L 15625050 intergenic not near genes chr2L_5_15620001 chr2L_15620001 RAL-385 182 chr2L 15887727 15887745 chr2L 15887853 15887898 8 138 0.5 2.0 1.2 3.6 171 chr2L 15887727 intergenic not near genes chr2L 15887812 intergenic not near genes chr2L 15887898 intergenic not near genes chr2L_8_15885001 chr2L_15885001 RAL-385 183 chr2L 16068557 16068611 chr2L 16068661 16068714 6 100 1.0 0.5 0.8 3.3 157 chr2L 16068557 intron beat-Ia + chr2L 16068636 intron beat-Ia + chr2L 16068714 intron beat-Ia + chr2L_6_16065001 chr2L_16065001 RAL-385 184 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 4.5 14.5 9.5 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-385 185 chr2L 16153718 16153768 chr2L 16160792 16160842 297 8 7072 1.0 2.5 1.8 2.9 7124 chr2L 16153718 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160842 intergenic not near genes chr2L_8_16155001 chr2L_16155001 RAL-385 186 chr2L 16354758 16354779 chr2L 16354870 16354878 8 110 2.0 2.5 2.2 2.5 120 chr2L 16354758 intergenic CaBP1 -,CG4455 + chr2L 16354818 intergenic CaBP1 -,CG4455 + chr2L 16354878 intergenic CaBP1 -,CG4455 + chr2L_8_16350001 chr2L_16350001 RAL-385 187 chr2L 16367100 16367126 chr2L 16367182 16367192 7 88 1.5 2.0 1.8 2.5 92 chr2L 16367100 intergenic jhamt + chr2L 16367146 intergenic jhamt + chr2L 16367192 intergenic jhamt + chr2L_7_16365001 chr2L_16365001 RAL-385 188 chr2L 16384477 16384525 chr2L 16384586 16384627 9 94 1.0 1.5 1.2 4.1 150 chr2L 16384477 intergenic not near genes chr2L 16384552 intergenic not near genes chr2L 16384627 intergenic not near genes chr2L_9_16380001 chr2L_16380001 RAL-385 189 chr2L 16504978 16505017 chr2L 16505102 16505147 7 129 0.5 1.5 1.0 3.5 169 chr2L 16504978 intron Tpr2 + chr2L 16505062 intron Tpr2 + chr2L 16505147 intron Tpr2 + chr2L_7_16505001 chr2L_16505001 RAL-385 190 chr2L 16511966 16511994 chr2L 16519113 16519141 HMS-Beagle 5 7143 3.5 4.5 4.0 1.0 7175 chr2L 16511966 intron CG5953 - chr2L 16515554 intron CG5953 - chr2L 16519141 intron CG5953 - chr2L_5_16515001 chr2L_16515001 RAL-385 191 chr2L 16572214 16572235 chr2L 16572305 16572309 6 97 1.5 2.0 1.8 2.1 95 chr2L 16572214 intron CG42389 + chr2L 16572262 intron CG42389 + chr2L 16572309 intron CG42389 + chr2L_6_16570001 chr2L_16570001 RAL-385 192 chr2L 16693892 16693915 chr2L 16693993 16693995 4 96 4.5 1.0 2.8 1.1 103 chr2L 16693892 intron grp + chr2L 16693944 intron grp + chr2L 16693995 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-385 193 chr2L 16697046 16697084 chr2L 16697216 16697254 5 170 3.5 0.0 1.8 1.8 208 chr2L 16697046 intron grp + chr2L 16697150 intron grp + chr2L 16697254 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-385 194 chr2L 16958095 16958140 chr2L 16962903 16962907 Doc 7 4802 1.0 2.5 1.8 2.5 4812 chr2L 16958095 intergenic not near genes chr2L 16960501 intergenic not near genes chr2L 16962907 intergenic not near genes chr2L_7_16960001 chr2L_16960001 RAL-385 195 chr2L 17052399 17052442 chr2L 17052531 17052574 7 130 1.0 1.5 1.2 3.2 175 chr2L 17052399 intergenic not near genes chr2L 17052486 intergenic not near genes chr2L 17052574 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-385 196 chr2L 17062757 17062790 chr2L 17062859 17062892 4 102 1.0 1.0 1.0 2.0 135 chr2L 17062757 intergenic not near genes chr2L 17062824 intergenic not near genes chr2L 17062892 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-385 197 chr2L 17089959 17089983 chr2L 17090038 17090063 5 90 0.5 1.0 0.8 2.8 104 chr2L 17089959 intergenic not near genes chr2L 17090011 intergenic not near genes chr2L 17090063 intergenic not near genes chr2L_5_17090001 chr2L_17090001 RAL-385 198 chr2L 17167554 17167580 chr2L 17167810 17167841 pogo 4 256 0.5 1.0 0.8 2.2 287 chr2L 17167554 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167841 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-385 199 chr2L 17168053 17168104 chr2L 17168668 17168719 7 619 9.0 10.5 9.8 0.6 666 chr2L 17168053 intron,intron CG34106 +,beat-IIIa + chr2L 17168386 intron,intron CG34106 +,beat-IIIa + chr2L 17168719 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-385 200 chr2L 17199146 17199178 chr2L 17200628 17200665 hobo 6 1486 1.0 1.0 1.0 3.0 1519 chr2L 17199146 intron beat-IIIc - chr2L 17199906 intron beat-IIIc - chr2L 17200665 intron beat-IIIc - chr2L_6_17195001 chr2L_17195001 RAL-385 201 chr2L 17264727 17264774 chr2L 17264825 17264874 7 100 3.0 1.5 2.2 2.2 147 chr2L 17264727 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264874 intergenic not near genes chr2L_7_17260001 chr2L_17260001 RAL-385 202 chr2L 17304973 17305005 chr2L 17305171 17305203 4 198 2.5 0.0 1.2 1.8 230 chr2L 17304973 intergenic not near genes chr2L 17305088 intergenic not near genes chr2L 17305203 intergenic not near genes chr2L_4_17305001 chr2L_17305001 RAL-385 203 chr2L 17351930 17351953 chr2L 17352050 17352073 5 121 1.0 0.5 0.8 2.8 143 chr2L 17351930 intergenic not near genes chr2L 17352002 intergenic not near genes chr2L 17352073 intergenic not near genes chr2L_5_17350001 chr2L_17350001 RAL-385 204 chr2L 17538306 17538343 chr2L 17538616 17538658 8 314 2.0 1.5 1.8 2.9 352 chr2L 17538306 intergenic not near genes chr2L 17538482 intergenic not near genes chr2L 17538658 intergenic not near genes chr2L_8_17535001 chr2L_17535001 RAL-385 205 chr2L 17543574 17543620 chr2L 17543687 17543726 5 108 1.0 0.0 0.5 3.3 152 chr2L 17543574 intergenic not near genes chr2L 17543650 intergenic not near genes chr2L 17543726 intergenic not near genes chr2L_5_17540001 chr2L_17540001 RAL-385 206 chr2L 17564144 17564164 chr2L 17564247 17564266 5 103 3.0 2.0 2.5 1.4 122 chr2L 17564144 intergenic not near genes chr2L 17564205 intergenic not near genes chr2L 17564266 intergenic not near genes chr2L_5_17560001 chr2L_17560001 RAL-385 207 chr2L 17951944 17951965 chr2L 17953420 17953452 hobo 4 1484 3.0 1.5 2.2 1.2 1508 chr2L 17951944 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953452 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-385 208 chr2L 18078271 18078306 chr2L 18078359 18078390 6 88 2.0 2.0 2.0 2.0 119 chr2L 18078271 5` UTR Arr1 + chr2L 18078330 5` UTR Arr1 + chr2L 18078390 exon Arr1 + chr2L_6_18075001 chr2L_18075001 RAL-385 209 chr2L 18254798 18254826 chr2L 18254918 18254946 4 120 0.5 1.0 0.8 2.2 148 chr2L 18254798 intron CG42750 - chr2L 18254872 intron CG42750 - chr2L 18254946 intron CG42750 - chr2L_4_18250001 chr2L_18250001 RAL-385 210 chr2L 18286403 18286432 chr2L 18286516 18286545 5 112 3.0 2.5 2.8 1.3 142 chr2L 18286403 intergenic not near genes chr2L 18286474 intergenic not near genes chr2L 18286545 intergenic not near genes chr2L_5_18285001 chr2L_18285001 RAL-385 211 chr2L 18291508 18291558 chr2L 18291625 18291645 5 103 1.0 0.0 0.5 3.3 137 chr2L 18291508 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291576 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291645 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_5_18290001 chr2L_18290001 RAL-385 212 chr2L 18439058 18439097 chr2L 18439164 18439203 12 100 1.5 1.5 1.5 4.8 145 chr2L 18439058 intergenic not near genes chr2L 18439130 intergenic not near genes chr2L 18439203 intergenic not near genes chr2L_12_18435001 chr2L_18435001 RAL-385 213 chr2L 18449383 18449419 chr2L 18449504 18449507 5 113 2.5 4.0 3.2 1.2 124 chr2L 18449383 intergenic bsf -,ncm - chr2L 18449445 intergenic bsf -,ncm - chr2L 18449507 intergenic bsf - chr2L_5_18445001 chr2L_18445001 RAL-385 214 chr2L 18538548 18538591 chr2L 18538650 18538692 8 101 0.5 3.0 1.8 2.9 144 chr2L 18538548 intron Pde11 - chr2L 18538620 intron Pde11 - chr2L 18538692 intron Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-385 215 chr2L 18811386 18811438 chr2L 18811487 18811539 8 101 2.0 0.0 1.0 4.0 153 chr2L 18811386 intergenic CG10570 -,CG42502 - chr2L 18811462 intergenic CG10570 -,CG42502 - chr2L 18811539 intergenic not near genes chr2L_8_18810001 chr2L_18810001 RAL-385 216 chr2L 18846436 18846465 chr2L 18846535 18846575 8 107 1.5 5.0 3.2 1.9 139 chr2L 18846436 intron CG17321 + chr2L 18846506 intron CG17321 + chr2L 18846575 intron CG17321 + chr2L_8_18845001 chr2L_18845001 RAL-385 217 chr2L 18902615 18902652 chr2L 18902916 18902948 6 300 4.0 2.0 3.0 1.5 333 chr2L 18902615 intergenic not near genes chr2L 18902782 intergenic not near genes chr2L 18902948 intergenic not near genes chr2L_6_18900001 chr2L_18900001 RAL-385 218 chr2L 18981402 18981411 chr2L 18981479 18981502 4 77 2.5 0.5 1.5 1.6 100 chr2L 18981402 intron Swip-1 - chr2L 18981452 intron Swip-1 - chr2L 18981502 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-385 219 chr2L 19163235 19163271 chr2L 19163560 19163589 4 322 1.0 1.5 1.2 1.8 354 chr2L 19163235 intron brat + chr2L 19163412 intron brat + chr2L 19163589 intron brat + chr2L_4_19160001 chr2L_19160001 RAL-385 220 chr2L 19246818 19246836 chr2L 19246916 19246934 7 98 5.0 3.5 4.2 1.3 116 chr2L 19246818 intergenic not near genes chr2L 19246876 intergenic not near genes chr2L 19246934 intergenic not near genes chr2L_7_19245001 chr2L_19245001 RAL-385 221 chr2L 19251669 19251702 chr2L 19251789 19251822 7 117 3.5 4.0 3.8 1.5 153 chr2L 19251669 intergenic not near genes chr2L 19251746 intergenic not near genes chr2L 19251822 intergenic not near genes chr2L_7_19250001 chr2L_19250001 RAL-385 222 chr2L 19357535 19357564 chr2L 19357636 19357638 5 101 4.0 2.0 3.0 1.2 103 chr2L 19357535 intron dnt - chr2L 19357586 intron dnt - chr2L 19357638 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-385 223 chr2L 19364070 19364107 chr2L 19364164 19364207 7 99 3.0 3.5 3.2 1.7 137 chr2L 19364070 intergenic CG13086 + chr2L 19364138 intergenic CG13086 + chr2L 19364207 intergenic CG13086 + chr2L_7_19360001 chr2L_19360001 RAL-385 224 chr2L 19405602 19405631 chr2L 19405712 19405731 10 109 2.0 1.5 1.8 3.6 129 chr2L 19405602 intron Pax - chr2L 19405666 intron Pax - chr2L 19405731 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-385 225 chr2L 19437502 19437529 chr2L 19437614 19437641 8 111 1.5 0.5 1.0 4.0 139 chr2L 19437502 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437641 intron CG10237 - chr2L_8_19435001 chr2L_19435001 RAL-385 226 chr2L 19441050 19441084 chr2L 19441147 19441172 6 95 2.5 2.5 2.5 1.7 122 chr2L 19441050 intron CG10237 - chr2L 19441111 intron CG10237 - chr2L 19441172 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-385 227 chr2L 19544597 19544619 chr2L 19544666 19544686 5 76 3.5 3.0 3.2 1.2 89 chr2L 19544597 exon ref(2)P + chr2L 19544642 exon ref(2)P + chr2L 19544686 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-385 228 chr2L 19601575 19601592 chr2L 19601670 19601689 5 97 0.0 3.0 1.5 2.0 114 chr2L 19601575 intron,intron Lar +,CR44978 - chr2L 19601632 intron,intron Lar +,CR44978 - chr2L 19601689 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-385 229 chr2L 19620092 19620129 chr2L 19621080 19621110 jockey 7 999 1.0 1.5 1.2 3.2 1018 chr2L 19620092 intron Lar + chr2L 19620601 intron Lar + chr2L 19621110 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-385 230 chr2L 19652566 19652597 chr2L 19674005 19674048 opus 10 21450 5.0 3.0 4.0 2.0 21482 chr2L 19652566 intron Lar + chr2L 19663307 intron Lar + chr2L 19674048 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-385 231 chr2L 19689042 19689077 chr2L 19689164 19689201 4 123 3.5 1.5 2.5 1.1 159 chr2L 19689042 intron Lar + chr2L 19689122 intron Lar + chr2L 19689201 intron Lar + chr2L_4_19685001 chr2L_19685001 RAL-385 232 chr2L 19703523 19703564 chr2L 19712679 19712708 roo 10 9153 5.0 1.0 3.0 2.5 9185 chr2L 19703523 intron Lar + chr2L 19708116 intron Lar + chr2L 19712708 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-385 233 chr2L 19712704 19712720 chr2L 19712770 19712810 5 90 1.5 2.0 1.8 1.8 106 chr2L 19712704 intron Lar + chr2L 19712757 intron Lar + chr2L 19712810 intron Lar + chr2L_5_19710001 chr2L_19710001 RAL-385 234 chr2L 19762821 19762835 chr2L 19763056 19763097 pogo 4 249 0.5 1.5 1.0 2.0 276 chr2L 19762821 intron fbp - chr2L 19762959 intron fbp - chr2L 19763097 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-385 235 chr2L 19773143 19773186 chr2L 19773249 19773293 10 105 4.0 1.0 2.5 2.9 150 chr2L 19773143 intergenic not near genes chr2L 19773218 intergenic not near genes chr2L 19773293 intergenic not near genes chr2L_10_19770001 chr2L_19770001 RAL-385 236 chr2L 19837266 19837304 chr2L 19837366 19837404 6 97 2.0 1.0 1.5 2.4 138 chr2L 19837266 intron sick + chr2L 19837335 intron sick + chr2L 19837404 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-385 237 chr2L 19846260 19846276 chr2L 19846361 19846377 4 101 0.0 4.0 2.0 1.3 117 chr2L 19846260 intron sick + chr2L 19846318 intron sick + chr2L 19846377 intron sick + chr2L_4_19845001 chr2L_19845001 RAL-385 238 chr2L 19947701 19947729 chr2L 19947795 19947835 4 103 0.0 1.0 0.5 2.7 134 chr2L 19947701 intron sick + chr2L 19947768 intron sick + chr2L 19947835 intron sick + chr2L_4_19945001 chr2L_19945001 RAL-385 239 chr2L 20022070 20022124 chr2L 20022203 20022256 7 133 0.5 2.0 1.2 3.2 186 chr2L 20022070 intergenic not near genes chr2L 20022163 intergenic not near genes chr2L 20022256 intergenic not near genes chr2L_7_20020001 chr2L_20020001 RAL-385 240 chr2L 20041420 20041457 chr2L 20041525 20041542 6 94 2.5 3.0 2.8 1.6 122 chr2L 20041420 intron sNPF + chr2L 20041481 intron sNPF + chr2L 20041542 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-385 241 chr2L 20079504 20079548 chr2L 20079645 20079689 6 137 0.0 1.0 0.5 4.0 185 chr2L 20079504 intron,intron neb +,fok - chr2L 20079596 intron,intron neb +,fok - chr2L 20079689 intron,intron neb +,fok - chr2L_6_20075001 chr2L_20075001 RAL-385 242 chr2L 20098707 20098747 chr2L 20099011 20099038 7 294 1.5 1.0 1.2 3.2 331 chr2L 20098707 intron Kua + chr2L 20098872 intron Kua + chr2L 20099038 intron Kua + chr2L_7_20095001 chr2L_20095001 RAL-385 243 chr2L 20236500 20236540 chr2L 20236586 20236636 13 93 2.5 3.0 2.8 3.4 136 chr2L 20236500 intergenic not near genes chr2L 20236568 intergenic not near genes chr2L 20236636 intergenic not near genes chr2L_13_20235001 chr2L_20235001 RAL-385 244 chr2L 20272100 20272139 chr2L 20282831 20282855 copia 9 10724 3.0 3.0 3.0 2.2 10755 chr2L 20272100 intergenic not near genes chr2L 20277478 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_9_20275001 chr2L_20275001 RAL-385 245 chr2L 20296499 20296536 chr2L 20296593 20296622 4 95 0.5 1.0 0.8 2.2 123 chr2L 20296499 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-385 246 chr2L 20302984 20303006 chr2L 20303094 20303116 4 110 5.5 0.0 2.8 1.1 132 chr2L 20302984 intergenic not near genes chr2L 20303050 intergenic not near genes chr2L 20303116 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-385 247 chr2L 20303163 20303181 chr2L 20310635 20310647 blood 4 7478 0.5 4.5 2.5 1.1 7484 chr2L 20303163 intergenic not near genes chr2L 20306905 intergenic not near genes chr2L 20310647 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-385 248 chr2L 20310874 20310892 chr2L 20310974 20310992 4 99 1.0 5.0 3.0 1.0 118 chr2L 20310874 intergenic spir + chr2L 20310933 intergenic spir + chr2L 20310992 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-385 249 chr2L 20372203 20372223 chr2L 20372473 20372474 pogo 5 263 3.0 2.0 2.5 1.4 271 chr2L 20372203 intergenic Ugt37a1 - chr2L 20372338 intergenic Ugt37a1 - chr2L 20372474 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-385 250 chr2L 20498677 20498708 chr2L 20498796 20498811 6 114 2.0 4.5 3.2 1.4 134 chr2L 20498677 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498811 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-385 251 chr2L 20549127 20549147 chr2L 20549216 20549249 6 95 2.5 1.0 1.8 2.1 122 chr2L 20549127 intergenic not near genes chr2L 20549188 intergenic not near genes chr2L 20549249 intergenic not near genes chr2L_6_20545001 chr2L_20545001 RAL-385 252 chr2L 20553174 20553197 chr2L 20553267 20553293 6 96 5.5 6.0 5.8 0.9 119 chr2L 20553174 intergenic not near genes chr2L 20553234 intergenic not near genes chr2L 20553293 intergenic not near genes chr2L_6_20550001 chr2L_20550001 RAL-385 253 chr2L 20553198 20553211 chr2L 20553263 20553307 4 88 4.0 5.0 4.5 0.7 109 chr2L 20553198 intergenic not near genes chr2L 20553252 intergenic not near genes chr2L 20553307 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-385 254 chr2L 20568642 20568681 chr2L 20569052 20569091 X-element 7 406 2.0 0.5 1.2 3.2 449 chr2L 20568642 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569091 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-385 255 chr2L 20695774 20695826 chr2L 20695882 20695934 8 105 2.0 1.5 1.8 2.9 160 chr2L 20695774 intron Hr38 - chr2L 20695854 intron Hr38 - chr2L 20695934 intron Hr38 - chr2L_8_20695001 chr2L_20695001 RAL-385 256 chr2L 20708769 20708791 chr2L 20708974 20708996 5 205 1.5 1.0 1.2 2.3 227 chr2L 20708769 intron Hr38 - chr2L 20708882 intron Hr38 - chr2L 20708996 intron Hr38 - chr2L_5_20705001 chr2L_20705001 RAL-385 257 chr2L 20835813 20835827 chr2L 20836549 20836564 Quasimodo 7 736 4.5 5.5 5.0 1.2 751 chr2L 20835813 5` UTR Oseg5 - chr2L 20836188 intergenic Oseg5 -,Spn38F - chr2L 20836564 intergenic Spn38F - chr2L_7_20835001 chr2L_20835001 RAL-385 258 chr2L 21020288 21020310 chr2L 21023950 21023954 NOF 4 3658 1.0 0.0 0.5 2.7 3666 chr2L 21020288 intron CG42238 - chr2L 21022121 intron CG42238 - chr2L 21023954 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-385 259 chr2L 21041122 21041153 chr2L 21049403 21049412 Tirant 4 8272 2.0 0.5 1.2 1.8 8290 chr2L 21041122 intron CG42238 - chr2L 21045267 intron CG42238 - chr2L 21049412 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-385 260 chr2L 21123206 21123226 chr2L 21123302 21123317 5 98 3.5 4.0 3.8 1.0 111 chr2L 21123206 intron Nhe2 + chr2L 21123262 intron Nhe2 + chr2L 21123317 intron Nhe2 + chr2L_5_21120001 chr2L_21120001 RAL-385 261 chr2L 21347538 21347581 chr2L 21355026 21355026 blood 8 7480 0.0 2.5 1.2 3.6 7488 chr2L 21347538 intron Tsp39D + chr2L 21351282 intron Tsp39D + chr2L 21355026 intron Tsp39D + chr2L_8_21350001 chr2L_21350001 RAL-385 262 chr2L 21355598 21355625 chr2L 21355748 21355769 4 150 3.0 0.5 1.8 1.4 171 chr2L 21355598 intron Tsp39D + chr2L 21355684 intron Tsp39D + chr2L 21355769 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-385 263 chr2L 21396597 21396610 chr2L 21396852 21396865 5 255 2.0 3.0 2.5 1.4 268 chr2L 21396597 intergenic not near genes chr2L 21396731 intergenic not near genes chr2L 21396865 intergenic not near genes chr2L_5_21395001 chr2L_21395001 RAL-385 264 chr2L 21653185 21653222 chr2L 21656495 21656546 invader4 7 3322 0.5 2.0 1.2 3.2 3361 chr2L 21653185 intergenic not near genes chr2L 21654866 intergenic not near genes chr2L 21656546 intergenic not near genes chr2L_7_21650001 chr2L_21650001 RAL-385 265 chr2L 21684283 21684321 chr2L 21684566 21684574 6 276 4.0 2.0 3.0 1.5 291 chr2L 21684283 intron CG31619 + chr2L 21684428 intron CG31619 + chr2L 21684574 5` UTR CG31619 + chr2L_6_21680001 chr2L_21680001 RAL-385 266 chr2L 21691809 21691846 chr2L 21698298 21698305 Burdock 8 6483 4.0 0.5 2.2 2.5 6496 chr2L 21691809 intron CG31619 + chr2L 21695057 intron CG31619 + chr2L 21698305 intron CG31619 + chr2L_8_21695001 chr2L_21695001 RAL-385 267 chr2L 21750082 21750131 chr2L 21750422 21750474 4 341 1.0 2.0 1.5 1.6 392 chr2L 21750082 intron step - chr2L 21750278 intron step - chr2L 21750474 intron step - chr2L_4_21750001 chr2L_21750001 RAL-385 268 chr2L 21754639 21754680 chr2L 21754740 21754780 6 99 3.5 1.5 2.5 1.7 141 chr2L 21754639 intron step - chr2L 21754710 intron step - chr2L 21754780 intron step - chr2L_6_21750001 chr2L_21750001 RAL-385 269 chr2L 21824110 21824153 chr2L 21824217 21824224 11 102 0.0 3.5 1.8 3.9 114 chr2L 21824110 intergenic not near genes chr2L 21824167 intergenic not near genes chr2L 21824224 intergenic not near genes chr2L_11_21820001 chr2L_21820001 RAL-385 270 chr2L 21966979 21967025 chr2L 21967124 21967172 5 140 2.0 3.0 2.5 1.4 193 chr2L 21966979 intergenic not near genes chr2L 21967076 intergenic not near genes chr2L 21967172 intergenic not near genes chr2L_5_21965001 chr2L_21965001 RAL-385 271 chr2L 21996945 21996953 chr2L 21997028 21997054 4 96 3.0 1.5 2.2 1.2 109 chr2L 21996945 intergenic not near genes chr2L 21997000 intergenic not near genes chr2L 21997054 intergenic not near genes chr2L_4_21995001 chr2L_21995001 RAL-385 272 chr2L 22025809 22025847 chr2L 22025905 22025932 7 95 1.5 4.0 2.8 1.8 123 chr2L 22025809 intergenic tio + chr2L 22025870 intergenic tio + chr2L 22025932 intergenic tio + chr2L_7_22025001 chr2L_22025001 RAL-385 273 chr2L 22191332 22191339 chr2L 22198316 22198340 4 6988 13.0 21.0 17.0 0.2 7008 chr2L 22191332 intron Ir40a - chr2L 22194836 intron Ir40a - chr2L 22198340 intron Ir40a - chr2L_4_22190001 chr2L_22190001 RAL-385 274 chr2L 9723025 9723025 chr2L 22522657 22522658 4 12799632 6.5 8.0 7.2 0.5 12799633 chr2L 9723025 intron Nckx30C - chr2L 16122842 intergenic not near genes chr2L 22522658 intergenic not near genes chr2L_4_16120001 chr2L_16120001 RAL-385 275 chr2L 22581982 22582002 chr2L 22583760 22583811 S-element 6 1804 0.5 1.5 1.0 3.0 1829 chr2L 22581982 intron CG17494 + chr2L 22582896 intron CG17494 + chr2L 22583811 intron CG17494 + chr2L_6_22580001 chr2L_22580001 RAL-385 276 chr2L 22776423 22776433 chr2L 22778232 22778242 S-element 4 1809 4.5 4.5 4.5 0.7 1819 chr2L 22776423 intergenic not near genes chr2L 22777332 intergenic not near genes chr2L 22778242 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-385 277 chr2R 1320204 1320204 chr2R 21358403 21358403 12 20038199 24.5 7.0 15.8 0.7 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_12_11335001 chr2R_11335001 RAL-385 278 chr2R 4604549 4604576 chr2R 4604647 4604672 5 92 0.5 1.5 1.0 2.5 123 chr2R 4604549 intron p120ctn + chr2R 4604610 intron p120ctn + chr2R 4604672 intron p120ctn + chr2R_5_4600001 chr2R_4600001 RAL-385 279 chr2R 4887603 4887643 chr2R 4887819 4887858 9 215 2.0 2.0 2.0 3.0 255 chr2R 4887603 intergenic not near genes chr2R 4887730 intergenic not near genes chr2R 4887858 intergenic not near genes chr2R_9_4885001 chr2R_4885001 RAL-385 280 chr2R 5256759 5256768 chr2R 5256846 5256871 5 100 4.5 2.0 3.2 1.2 112 chr2R 5256759 intergenic not near genes chr2R 5256815 intergenic not near genes chr2R 5256871 intergenic not near genes chr2R_5_5255001 chr2R_5255001 RAL-385 281 chr2R 5256773 5256786 chr2R 5256845 5256894 5 98 3.5 2.0 2.8 1.3 121 chr2R 5256773 intergenic not near genes chr2R 5256834 intergenic not near genes chr2R 5256894 intergenic not near genes chr2R_5_5255001 chr2R_5255001 RAL-385 282 chr2R 5724972 5725021 chr2R 5725222 5725271 17 248 3.5 1.5 2.5 4.9 299 chr2R 5724972 intron ap - chr2R 5725122 intron ap - chr2R 5725271 intron ap - chr2R_17_5725001 chr2R_5725001 RAL-385 283 chr2R 5790457 5790487 chr2R 5790560 5790592 5 104 3.5 1.5 2.5 1.4 135 chr2R 5790457 intergenic not near genes chr2R 5790524 intergenic not near genes chr2R 5790592 intergenic not near genes chr2R_5_5790001 chr2R_5790001 RAL-385 284 chr2R 5834088 5834112 chr2R 5834271 5834298 5 182 3.5 2.0 2.8 1.3 210 chr2R 5834088 intron dpr12 + chr2R 5834193 intron dpr12 + chr2R 5834298 intron dpr12 + chr2R_5_5830001 chr2R_5830001 RAL-385 285 chr2R 5869258 5869301 chr2R 5874353 5874390 flea 5 5081 3.0 0.5 1.8 1.8 5132 chr2R 5869258 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874390 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-385 286 chr2R 5878934 5878958 chr2R 5879034 5879058 6 97 3.0 6.5 4.8 1.0 124 chr2R 5878934 intergenic CG44438 - chr2R 5878996 intergenic CG44438 - chr2R 5879058 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-385 287 chr2R 6088356 6088388 chr2R 6088469 6088501 13 112 1.5 5.0 3.2 3.1 145 chr2R 6088356 intergenic not near genes chr2R 6088428 intergenic not near genes chr2R 6088501 intergenic not near genes chr2R_13_6085001 chr2R_6085001 RAL-385 288 chr2R 6129314 6129350 chr2R 6129412 6129448 6 95 1.5 0.5 1.0 3.0 134 chr2R 6129314 intron EcR - chr2R 6129381 intron EcR - chr2R 6129448 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-385 289 chr2R 6178673 6178713 chr2R 6178772 6178818 8 104 0.5 2.0 1.2 3.6 145 chr2R 6178673 intergenic not near genes chr2R 6178746 intergenic not near genes chr2R 6178818 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-385 290 chr2R 6546698 6546749 chr2R 6546819 6546870 9 120 3.5 1.5 2.5 2.6 172 chr2R 6546698 intron jing + chr2R 6546784 intron jing + chr2R 6546870 intron jing + chr2R_9_6545001 chr2R_6545001 RAL-385 291 chr2R 6579786 6579805 chr2R 6584893 6584901 flea 6 5103 0.5 1.0 0.8 3.3 5115 chr2R 6579786 intron jing + chr2R 6582344 intron jing + chr2R 6584901 intron jing + chr2R_6_6580001 chr2R_6580001 RAL-385 292 chr2R 6664169 6664210 chr2R 6665975 6666016 S-element 9 1806 3.0 3.0 3.0 2.2 1847 chr2R 6664169 intron,3` UTR Adf1 +,CR45128 - chr2R 6665092 intron Adf1 + chr2R 6666016 intron Adf1 + chr2R_9_6665001 chr2R_6665001 RAL-385 293 chr2R 6711720 6711767 chr2R 6711826 6711874 9 108 3.5 2.5 3.0 2.2 154 chr2R 6711720 intron,intron CG3409 -,CG45092 - chr2R 6711797 intron,intron CG3409 -,CG45092 - chr2R 6711874 intron,intron CG3409 -,CG45092 - chr2R_9_6710001 chr2R_6710001 RAL-385 294 chr2R 6932782 6932812 chr2R 6932867 6932901 7 89 2.0 1.5 1.8 2.5 119 chr2R 6932782 intron mim - chr2R 6932842 intron mim - chr2R 6932901 intron mim - chr2R_7_6930001 chr2R_6930001 RAL-385 295 chr2R 6964270 6964316 chr2R 6964367 6964403 8 95 2.0 3.0 2.5 2.3 133 chr2R 6964270 intron,intron mim -,CheB42c - chr2R 6964336 intron,intron mim -,CheB42c - chr2R 6964403 intron,intron mim -,CheB42c - chr2R_8_6960001 chr2R_6960001 RAL-385 296 chr2R 6978618 6978661 chr2R 6978821 6978828 14 199 2.5 1.5 2.0 4.7 210 chr2R 6978618 intron vimar - chr2R 6978723 intron vimar - chr2R 6978828 intron vimar - chr2R_14_6975001 chr2R_6975001 RAL-385 297 chr2R 7091214 7091224 chr2R 7091301 7091326 5 99 4.0 5.0 4.5 0.9 112 chr2R 7091214 intron esn + chr2R 7091270 intron esn + chr2R 7091326 intron esn + chr2R_5_7090001 chr2R_7090001 RAL-385 298 chr2R 7091227 7091241 chr2R 7091295 7091330 4 89 3.0 3.5 3.2 1.0 103 chr2R 7091227 intron esn + chr2R 7091278 intron esn + chr2R 7091330 intron esn + chr2R_4_7090001 chr2R_7090001 RAL-385 299 chr2R 7171255 7171284 chr2R 7171360 7171389 4 105 2.5 8.5 5.5 0.6 134 chr2R 7171255 intron pk + chr2R 7171322 intron pk + chr2R 7171389 intron pk + chr2R_4_7170001 chr2R_7170001 RAL-385 300 chr2R 7196552 7196586 chr2R 7201347 7201381 F-element 8 4794 5.5 8.0 6.8 1.0 4829 chr2R 7196552 intron pk + chr2R 7198966 intron pk + chr2R 7201381 intron pk + chr2R_8_7195001 chr2R_7195001 RAL-385 301 chr2R 7196591 7196597 chr2R 7201344 7201392 F-element 5 4785 3.5 8.5 6.0 0.7 4801 chr2R 7196591 intron pk + chr2R 7198992 intron pk + chr2R 7201392 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-385 302 chr2R 7209872 7209873 chr2R 7217643 7217654 roo 4 7778 0.0 5.5 2.8 1.1 7782 chr2R 7209872 intron pk + chr2R 7213763 intron pk + chr2R 7217654 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-385 303 chr2R 7235807 7235852 chr2R 7240919 7240929 jockey 6 5106 2.0 1.0 1.5 2.4 5122 chr2R 7235807 intergenic not near genes chr2R 7238368 intergenic not near genes chr2R 7240929 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-385 304 chr2R 7243368 7243393 chr2R 7247769 7247794 4 4401 24.5 22.5 23.5 0.2 4426 chr2R 7243368 3` UTR Ady43A - chr2R 7245581 5` UTR Ady43A - chr2R 7247794 intergenic not near genes chr2R_4_7245001 chr2R_7245001 RAL-385 305 chr2R 7417883 7418167 chr2R 7417989 7418261 16 94 4.5 3.0 3.8 3.3 378 chr2R 7417883 intergenic not near genes chr2R 7418072 intergenic not near genes chr2R 7418261 intergenic not near genes chr2R_16_7415001 chr2R_7415001 RAL-385 306 chr2R 7434878 7434919 chr2R 7439197 7439240 Juan 10 4320 7.5 3.0 5.2 1.6 4362 chr2R 7434878 intergenic so + chr2R 7437059 intergenic not near genes chr2R 7439240 intergenic not near genes chr2R_10_7435001 chr2R_7435001 RAL-385 307 chr2R 7450174 7450229 chr2R 7450284 7450339 13 105 1.5 2.5 2.0 4.3 165 chr2R 7450174 intron fa2h - chr2R 7450256 intron fa2h - chr2R 7450339 intron fa2h - chr2R_13_7450001 chr2R_7450001 RAL-385 308 chr2R 7608393 7608444 chr2R 7613606 7613637 I-element 9 5200 5.5 0.5 3.0 2.2 5244 chr2R 7608393 intron CG1358 - chr2R 7611015 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-385 309 chr2R 7692008 7692038 chr2R 7692109 7692118 10 99 0.0 2.0 1.0 5.0 110 chr2R 7692008 intron CG1399 - chr2R 7692063 intron CG1399 - chr2R 7692118 intron CG1399 - chr2R_10_7690001 chr2R_7690001 RAL-385 310 chr2R 7787065 7787099 chr2R 7787167 7787201 10 102 5.0 0.5 2.8 2.6 136 chr2R 7787065 intron CanB2 + chr2R 7787133 intron CanB2 + chr2R 7787201 intron CanB2 + chr2R_10_7785001 chr2R_7785001 RAL-385 311 chr2R 7815668 7815687 chr2R 7822139 7822176 Burdock 9 6483 8.0 1.5 4.8 1.6 6508 chr2R 7815668 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822176 3` UTR cathD - chr2R_9_7815001 chr2R_7815001 RAL-385 312 chr2R 7869182 7869209 chr2R 7873978 7873985 Doc 5 4793 5.0 1.0 3.0 1.2 4803 chr2R 7869182 intron Dgk - chr2R 7871584 intron Dgk - chr2R 7873985 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-385 313 chr2R 8006827 8006877 chr2R 8007006 8007036 23 175 3.0 4.0 3.5 5.1 209 chr2R 8006827 intergenic Odc1 +,Odc2 + chr2R 8006932 intergenic Odc1 +,Odc2 + chr2R 8007036 intergenic Odc2 +,Odc1 + chr2R_23_8005001 chr2R_8005001 RAL-385 314 chr2R 8008846 8008894 chr2R 8008961 8008977 10 112 1.5 2.0 1.8 3.6 131 chr2R 8008846 intron Odc2 + chr2R 8008912 exon Odc2 + chr2R 8008977 exon Odc2 + chr2R_10_8005001 chr2R_8005001 RAL-385 315 chr2R 8049588 8049600 chr2R 8049740 8049752 4 152 0.0 5.0 2.5 1.1 164 chr2R 8049588 intergenic not near genes chr2R 8049670 intergenic not near genes chr2R 8049752 intergenic not near genes chr2R_4_8045001 chr2R_8045001 RAL-385 316 chr2R 8067047 8067096 chr2R 8067151 8067179 12 99 2.5 3.5 3.0 3.0 132 chr2R 8067047 intron CG17977 - chr2R 8067113 intron CG17977 - chr2R 8067179 exon CG17977 - chr2R_12_8065001 chr2R_8065001 RAL-385 317 chr2R 8076678 8076696 chr2R 8076773 8076796 5 99 5.0 4.0 4.5 0.9 118 chr2R 8076678 intron lig + chr2R 8076737 intron lig + chr2R 8076796 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-385 318 chr2R 8076697 8076707 chr2R 8076766 8076807 5 93 2.5 3.0 2.8 1.3 110 chr2R 8076697 intron lig + chr2R 8076752 intron lig + chr2R 8076807 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-385 319 chr2R 8089238 8089286 chr2R 8089344 8089392 7 104 3.5 4.5 4.0 1.4 154 chr2R 8089238 3` UTR sut2 + chr2R 8089315 intergenic sut2 +,sut3 + chr2R 8089392 intergenic sut3 +,sut2 + chr2R_7_8085001 chr2R_8085001 RAL-385 320 chr2R 8160937 8160944 chr2R 8161027 8161052 1360 6 106 0.5 6.5 3.5 1.3 115 chr2R 8160937 intron CG8708 - chr2R 8160994 intron CG8708 - chr2R 8161052 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-385 321 chr2R 8236018 8236024 chr2R 8236119 8236125 5 101 4.0 2.5 3.2 1.2 107 chr2R 8236018 intergenic not near genes chr2R 8236072 intergenic not near genes chr2R 8236125 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-385 322 chr2R 8249563 8249579 chr2R 8249665 8249681 6 101 2.5 2.5 2.5 1.7 118 chr2R 8249563 5` UTR CG44439 - chr2R 8249622 intergenic CG44439 - chr2R 8249681 intergenic CG44439 - chr2R_6_8245001 chr2R_8245001 RAL-385 323 chr2R 8297430 8297451 chr2R 8297523 8297550 8 97 2.5 2.0 2.2 2.5 120 chr2R 8297430 intergenic not near genes chr2R 8297490 intergenic not near genes chr2R 8297550 intergenic not near genes chr2R_8_8295001 chr2R_8295001 RAL-385 324 chr2R 8330856 8330895 chr2R 8331347 8331372 roo 9 499 1.0 2.0 1.5 3.6 516 chr2R 8330856 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331372 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-385 325 chr2R 8536193 8536225 chr2R 8536430 8536451 4 232 0.5 0.5 0.5 2.7 258 chr2R 8536193 intergenic not near genes chr2R 8536322 intergenic not near genes chr2R 8536451 intergenic not near genes chr2R_4_8535001 chr2R_8535001 RAL-385 326 chr2R 8561304 8561350 chr2R 8561651 8561674 6 338 0.5 1.5 1.0 3.0 370 chr2R 8561304 intergenic not near genes chr2R 8561489 intergenic not near genes chr2R 8561674 intergenic not near genes chr2R_6_8560001 chr2R_8560001 RAL-385 327 chr2R 8612561 8612610 chr2R 8612658 8612706 13 96 3.0 3.5 3.2 3.1 145 chr2R 8612561 intron CG8642 - chr2R 8612634 intron CG8642 - chr2R 8612706 intron CG8642 - chr2R_13_8610001 chr2R_8610001 RAL-385 328 chr2R 8627733 8627760 chr2R 8627832 8627838 4 94 5.0 0.5 2.8 1.1 105 chr2R 8627733 intergenic beta3GalTII -,CG14749 + chr2R 8627786 intergenic CG14749 +,beta3GalTII - chr2R 8627838 intergenic CG14749 +,beta3GalTII - chr2R_4_8625001 chr2R_8625001 RAL-385 329 chr2R 8691120 8691140 chr2R 8691602 8691628 4 484 3.5 0.5 2.0 1.3 508 chr2R 8691120 intergenic Jon44E + chr2R 8691374 intergenic Jon44E + chr2R 8691628 exon Jon44E + chr2R_4_8690001 chr2R_8690001 RAL-385 330 chr2R 8714711 8714721 chr2R 8714783 8714816 5 89 0.5 5.0 2.8 1.3 105 chr2R 8714711 3` UTR PGRP-SC1b + chr2R 8714764 3` UTR PGRP-SC1b + chr2R 8714816 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-385 331 chr2R 8833407 8833453 chr2R 8833509 8833544 13 95 3.5 1.5 2.5 3.7 137 chr2R 8833407 intron sns + chr2R 8833476 intron sns + chr2R 8833544 intron sns + chr2R_13_8830001 chr2R_8830001 RAL-385 332 chr2R 9047422 9047431 chr2R 9047537 9047546 5 113 0.0 1.0 0.5 3.3 124 chr2R 9047422 intron CG13743 - chr2R 9047484 intron CG13743 - chr2R 9047546 intron CG13743 - chr2R_5_9045001 chr2R_9045001 RAL-385 333 chr2R 9065896 9065949 chr2R 9065998 9066051 12 101 1.5 1.5 1.5 4.8 155 chr2R 9065896 intron ana + chr2R 9065974 intron ana + chr2R 9066051 intron ana + chr2R_12_9065001 chr2R_9065001 RAL-385 334 chr2R 9151309 9151327 chr2R 9157779 9157817 Burdock 8 6488 3.5 6.0 4.8 1.4 6508 chr2R 9151309 3` UTR CG30345 + chr2R 9154563 intergenic not near genes chr2R 9157817 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 RAL-385 335 chr2R 9183116 9183144 chr2R 9183215 9183246 5 99 3.0 4.0 3.5 1.1 130 chr2R 9183116 intron ltd - chr2R 9183181 intron ltd - chr2R 9183246 intron ltd - chr2R_5_9180001 chr2R_9180001 RAL-385 336 chr2R 9258410 9258426 chr2R 9258520 9258536 5 110 11.5 5.0 8.2 0.5 126 chr2R 9258410 intron Pkn - chr2R 9258473 intron Pkn - chr2R 9258536 intron Pkn - chr2R_5_9255001 chr2R_9255001 RAL-385 337 chr2R 9265255 9265293 chr2R 9265454 9265467 7 197 1.5 1.0 1.2 3.2 212 chr2R 9265255 intron Pkn - chr2R 9265361 intron Pkn - chr2R 9265467 intron Pkn - chr2R_7_9265001 chr2R_9265001 RAL-385 338 chr2R 9379927 9379950 chr2R 9380023 9380046 4 88 0.5 2.5 1.5 1.6 119 chr2R 9379927 intron CG13954 - chr2R 9379986 intron CG13954 - chr2R 9380046 intron CG13954 - chr2R_4_9375001 chr2R_9375001 RAL-385 339 chr2R 9480075 9480104 chr2R 9490625 9490655 roo 6 10549 4.5 5.5 5.0 1.0 10580 chr2R 9480075 intergenic not near genes chr2R 9485365 intergenic not near genes chr2R 9490655 intergenic not near genes chr2R_6_9485001 chr2R_9485001 RAL-385 340 chr2R 9789068 9789119 chr2R 9789186 9789229 5 111 0.0 2.5 1.2 2.3 161 chr2R 9789068 intron,5` UTR CG1688 -,CR44208 + chr2R 9789148 intron,5` UTR CG1688 -,CR44208 + chr2R 9789229 intron,5` UTR CG1688 -,CR44208 + chr2R_5_9785001 chr2R_9785001 RAL-385 341 chr2R 10005534 10005584 chr2R 10005661 10005712 15 127 2.5 1.5 2.0 5.0 178 chr2R 10005534 intron Pka-R2 - chr2R 10005623 intron Pka-R2 - chr2R 10005712 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-385 342 chr2R 10132174 10132216 chr2R 10132274 10132316 5 100 0.5 5.5 3.0 1.2 142 chr2R 10132174 intron gem + chr2R 10132245 intron gem + chr2R 10132316 exon gem + chr2R_5_10130001 chr2R_10130001 RAL-385 343 chr2R 10194903 10194903 chr2R 11132216 11132216 mdg1 4 937313 12.5 8.5 10.5 0.3 937313 chr2R 10194903 intergenic not near genes chr2R 10663560 intergenic not near genes chr2R 11132216 intergenic not near genes chr2R_4_10660001 chr2R_10660001 RAL-385 344 chr2R 10290100 10290132 chr2R 10290197 10290233 4 100 5.0 3.5 4.2 0.8 133 chr2R 10290100 intron CAP + chr2R 10290166 intron CAP + chr2R 10290233 intron CAP + chr2R_4_10290001 chr2R_10290001 RAL-385 345 chr2R 10300626 10300672 chr2R 10300742 10300788 9 114 0.0 0.0 0.0 9.0 162 chr2R 10300626 intron CAP + chr2R 10300707 intron CAP + chr2R 10300788 intron CAP + chr2R_9_10300001 chr2R_10300001 RAL-385 346 chr2R 10313298 10313354 chr2R 10313404 10313418 21 96 2.5 8.0 5.2 3.4 120 chr2R 10313298 intergenic not near genes chr2R 10313358 intergenic not near genes chr2R 10313418 intergenic Ndg + chr2R_21_10310001 chr2R_10310001 RAL-385 347 chr2R 10409041 10409086 chr2R 10409138 10409182 10 90 0.0 3.5 1.8 3.6 141 chr2R 10409041 intron CG42732 - chr2R 10409112 intron CG42732 - chr2R 10409182 intron,exon CG42732 -,CG33477 - chr2R_10_10405001 chr2R_10405001 RAL-385 348 chr2R 10411793 10411832 chr2R 10411895 10411934 6 100 1.5 1.0 1.2 2.7 141 chr2R 10411793 intron CG42732 - chr2R 10411864 intron CG42732 - chr2R 10411934 intron CG42732 - chr2R_6_10410001 chr2R_10410001 RAL-385 349 chr2R 10477141 10477157 chr2R 10477501 10477517 5 360 1.5 0.0 0.8 2.8 376 chr2R 10477141 intron whd - chr2R 10477329 intron whd - chr2R 10477517 intron whd - chr2R_5_10475001 chr2R_10475001 RAL-385 350 chr2R 10574630 10574650 chr2R 10574711 10574723 4 90 1.5 2.5 2.0 1.3 93 chr2R 10574630 intron psq + chr2R 10574676 intron psq + chr2R 10574723 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-385 351 chr2R 10582106 10582144 chr2R 10582221 10582254 9 113 3.5 0.0 1.8 3.2 148 chr2R 10582106 intron psq + chr2R 10582180 intron psq + chr2R 10582254 intron psq + chr2R_9_10580001 chr2R_10580001 RAL-385 352 chr2R 10644044 10644084 chr2R 10644142 10644182 10 98 1.0 0.0 0.5 6.7 138 chr2R 10644044 intron Git - chr2R 10644113 intron Git - chr2R 10644182 intron Git - chr2R_10_10640001 chr2R_10640001 RAL-385 353 chr2R 10790143 10790163 chr2R 10790251 10790271 4 108 3.0 0.5 1.8 1.4 128 chr2R 10790143 intron CG33144 - chr2R 10790207 intron CG33144 - chr2R 10790271 intron CG33144 - chr2R_4_10790001 chr2R_10790001 RAL-385 354 chr2R 10794900 10794933 chr2R 10794998 10795031 6 98 1.5 3.0 2.2 1.9 131 chr2R 10794900 intron CG33144 - chr2R 10794966 intron CG33144 - chr2R 10795031 intron CG33144 - chr2R_6_10790001 chr2R_10790001 RAL-385 355 chr2R 10909381 10909418 chr2R 10909514 10909536 7 128 2.0 3.5 2.8 1.8 155 chr2R 10909381 intergenic not near genes chr2R 10909458 intergenic Obp47a + chr2R 10909536 intergenic Obp47a + chr2R_7_10905001 chr2R_10905001 RAL-385 356 chr2R 10937806 10937830 chr2R 10937955 10937988 5 156 0.0 2.0 1.0 2.5 182 chr2R 10937806 intergenic not near genes chr2R 10937897 intergenic not near genes chr2R 10937988 intergenic Spn47C - chr2R_5_10935001 chr2R_10935001 RAL-385 357 chr2R 10959078 10959111 chr2R 10959177 10959210 6 99 3.0 2.5 2.8 1.6 132 chr2R 10959078 intergenic not near genes chr2R 10959144 intergenic not near genes chr2R 10959210 intergenic not near genes chr2R_6_10955001 chr2R_10955001 RAL-385 358 chr2R 11179264 11179282 chr2R 11179370 11179388 7 103 2.5 3.0 2.8 1.8 124 chr2R 11179264 intron shn + chr2R 11179326 intron shn + chr2R 11179388 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-385 359 chr2R 11297626 11297637 chr2R 11301970 11301974 flea 4 4342 1.0 0.0 0.5 2.7 4348 chr2R 11297626 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11301974 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-385 360 chr2R 11472627 11472669 chr2R 11473844 11473884 pogo 5 1216 3.0 2.5 2.8 1.3 1257 chr2R 11472627 intergenic not near genes chr2R 11473256 intergenic not near genes chr2R 11473884 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-385 361 chr2R 11724142 11724179 chr2R 11724245 11724282 4 101 2.0 0.0 1.0 2.0 140 chr2R 11724142 intron pyr + chr2R 11724212 intron pyr + chr2R 11724282 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-385 362 chr2R 12124822 12124855 chr2R 12124920 12124941 7 95 2.0 0.5 1.2 3.2 119 chr2R 12124822 intergenic not near genes chr2R 12124882 intergenic not near genes chr2R 12124941 intergenic not near genes chr2R_7_12120001 chr2R_12120001 RAL-385 363 chr2R 12185990 12186035 chr2R 12186097 12186150 20 108 4.5 3.0 3.8 4.2 160 chr2R 12185990 intron Cyp6g1 + chr2R 12186070 intron Cyp6g1 + chr2R 12186150 intron Cyp6g1 + chr2R_20_12185001 chr2R_12185001 RAL-385 364 chr2R 12187475 12187525 chr2R 12190073 12190121 4 2610 33.5 26.0 29.8 0.1 2646 chr2R 12187475 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190121 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-385 365 chr2R 12363365 12363416 chr2R 12363816 12363842 10 444 1.5 3.0 2.2 3.1 477 chr2R 12363365 intergenic CG30043 + chr2R 12363604 intergenic CG30043 + chr2R 12363842 intergenic not near genes chr2R_10_12360001 chr2R_12360001 RAL-385 366 chr2R 12504155 12504179 chr2R 12504224 12504225 4 77 4.5 3.0 3.8 0.8 70 chr2R 12504155 intron fdl - chr2R 12504190 intron fdl - chr2R 12504225 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-385 367 chr2R 12602793 12602806 chr2R 12602897 12602910 4 104 3.0 1.5 2.2 1.2 117 chr2R 12602793 intron Amph + chr2R 12602852 intron Amph + chr2R 12602910 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-385 368 chr2R 12602809 12602836 chr2R 12602895 12602940 4 100 1.5 1.0 1.2 1.8 131 chr2R 12602809 intron Amph + chr2R 12602874 intron Amph + chr2R 12602940 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-385 369 chr2R 12707534 12707546 chr2R 12715919 12715932 roo 4 8386 0.5 3.5 2.0 1.3 8398 chr2R 12707534 intron CG42663 + chr2R 12711733 intron CG42663 + chr2R 12715932 intron CG42663 + chr2R_4_12710001 chr2R_12710001 RAL-385 370 chr2R 12834153 12834190 chr2R 12834248 12834248 7 94 2.5 1.0 1.8 2.5 95 chr2R 12834153 intergenic not near genes chr2R 12834200 intergenic not near genes chr2R 12834248 intergenic not near genes chr2R_7_12830001 chr2R_12830001 RAL-385 371 chr2R 13043033 13043064 chr2R 13043133 13043163 5 100 0.0 2.5 1.2 2.3 130 chr2R 13043033 intergenic not near genes chr2R 13043098 intergenic not near genes chr2R 13043163 intergenic not near genes chr2R_5_13040001 chr2R_13040001 RAL-385 372 chr2R 13136836 13136854 chr2R 13141654 13141660 Doc 5 4813 3.0 2.0 2.5 1.4 4824 chr2R 13136836 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141660 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-385 373 chr2R 13167415 13167443 chr2R 13167524 13167557 12 113 8.5 0.5 4.5 2.2 142 chr2R 13167415 intron GLaz - chr2R 13167486 intron GLaz - chr2R 13167557 intron GLaz - chr2R_12_13165001 chr2R_13165001 RAL-385 374 chr2R 13170700 13170749 chr2R 13170809 13170822 7 98 3.5 2.5 3.0 1.8 122 chr2R 13170700 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170761 intergenic CR45142 -,Spt-I + chr2R 13170822 intergenic CR45142 -,Spt-I + chr2R_7_13170001 chr2R_13170001 RAL-385 375 chr2R 13241045 13241089 chr2R 13241162 13241176 5 111 1.0 1.5 1.2 2.3 131 chr2R 13241045 intergenic GstE14 + chr2R 13241110 intergenic GstE14 + chr2R 13241176 intergenic GstE14 + chr2R_5_13240001 chr2R_13240001 RAL-385 376 chr2R 13431475 13431519 chr2R 13431572 13431592 7 94 2.0 3.0 2.5 2.0 117 chr2R 13431475 intron CG42321 - chr2R 13431534 intron CG42321 - chr2R 13431592 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-385 377 chr2R 13464469 13464488 chr2R 13464610 13464623 4 142 1.5 2.0 1.8 1.4 154 chr2R 13464469 intron arr - chr2R 13464546 intron arr - chr2R 13464623 intron arr - chr2R_4_13460001 chr2R_13460001 RAL-385 378 chr2R 13566259 13566284 chr2R 13566352 13566377 4 96 0.5 0.0 0.2 3.3 118 chr2R 13566259 intergenic not near genes chr2R 13566318 intergenic not near genes chr2R 13566377 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-385 379 chr2R 13728110 13728134 chr2R 13735791 13735805 opus 4 7678 5.0 3.0 4.0 0.8 7695 chr2R 13728110 intron fas + chr2R 13731958 intron fas + chr2R 13735805 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-385 380 chr2R 13922609 13922648 chr2R 13922702 13922744 5 91 1.5 0.5 1.0 2.5 135 chr2R 13922609 intron shot - chr2R 13922676 intron shot - chr2R 13922744 intron shot - chr2R_5_13920001 chr2R_13920001 RAL-385 381 chr2R 14037281 14037299 chr2R 14037359 14037402 4 90 0.0 3.5 1.8 1.4 121 chr2R 14037281 intron mam + chr2R 14037342 intron mam + chr2R 14037402 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-385 382 chr2R 14049101 14049140 chr2R 14049226 14049248 4 118 2.5 0.0 1.2 1.8 147 chr2R 14049101 intron mam + chr2R 14049174 intron mam + chr2R 14049248 intron mam + chr2R_4_14045001 chr2R_14045001 RAL-385 383 chr2R 14168350 14168367 chr2R 14168459 14168476 6 109 4.0 2.0 3.0 1.5 126 chr2R 14168350 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168413 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168476 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_6_14165001 chr2R_14165001 RAL-385 384 chr2R 14168369 14168380 chr2R 14168458 14168489 6 106 3.5 2.0 2.8 1.6 120 chr2R 14168369 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168429 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168489 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_6_14165001 chr2R_14165001 RAL-385 385 chr2R 14265428 14265463 chr2R 14265521 14265543 5 85 1.5 3.0 2.2 1.6 115 chr2R 14265428 intron CG8547 - chr2R 14265486 intron CG8547 - chr2R 14265543 intron CG8547 - chr2R_5_14265001 chr2R_14265001 RAL-385 386 chr2R 14266751 14266777 chr2R 14266847 14266849 4 90 3.0 3.0 3.0 1.0 98 chr2R 14266751 intron CG8547 - chr2R 14266800 intron CG8547 - chr2R 14266849 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-385 387 chr2R 14285042 14285050 chr2R 14285139 14285167 6 110 3.5 4.5 4.0 1.2 125 chr2R 14285042 intron Ih + chr2R 14285104 intron Ih + chr2R 14285167 intron Ih + chr2R_6_14285001 chr2R_14285001 RAL-385 388 chr2R 14357548 14357738 chr2R 14357654 14357898 14 114 14.0 6.0 10.0 1.3 350 chr2R 14357548 intergenic CG8617 -,Arc1 - chr2R 14357723 intergenic Arc1 -,CG8617 - chr2R 14357898 intergenic Arc1 - chr2R_14_14355001 chr2R_14355001 RAL-385 389 chr2R 14373489 14373529 chr2R 14373596 14373605 4 99 1.0 1.0 1.0 2.0 116 chr2R 14373489 exon Obp50d + chr2R 14373547 exon Obp50d + chr2R 14373605 exon Obp50d + chr2R_4_14370001 chr2R_14370001 RAL-385 390 chr2R 14497381 14497419 chr2R 14498564 14498605 1360 5 1174 0.0 4.0 2.0 1.7 1224 chr2R 14497381 3` UTR Cpsf160 - chr2R 14497993 intron Cpsf160 - chr2R 14498605 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-385 391 chr2R 14728193 14728232 chr2R 14728296 14728334 5 100 1.5 1.0 1.2 2.3 141 chr2R 14728193 intergenic not near genes chr2R 14728264 intergenic not near genes chr2R 14728334 intergenic not near genes chr2R_5_14725001 chr2R_14725001 RAL-385 392 chr2R 14855011 14855063 chr2R 14855123 14855150 4 96 2.0 0.0 1.0 2.0 139 chr2R 14855011 5` UTR Ciao1 - chr2R 14855080 intergenic Ciao1 -,HPS1 + chr2R 14855150 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-385 393 chr2R 14889187 14889226 chr2R 14897815 14897819 Max-element 5 8618 5.5 0.0 2.8 1.3 8632 chr2R 14889187 intergenic Cyp6a8 - chr2R 14893503 intergenic not near genes chr2R 14897819 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-385 394 chr2R 14911690 14911720 chr2R 14911833 14911863 5 141 3.0 6.5 4.8 0.9 173 chr2R 14911690 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911863 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-385 395 chr2R 14917855 14917871 chr2R 14917944 14917976 5 101 2.0 2.5 2.2 1.6 121 chr2R 14917855 intron CG10249 - chr2R 14917916 intron CG10249 - chr2R 14917976 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-385 396 chr2R 14930833 14930847 chr2R 14930946 14930960 5 111 0.5 0.0 0.2 4.2 127 chr2R 14930833 intron CG10253 - chr2R 14930896 intron CG10253 - chr2R 14930960 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-385 397 chr2R 14934434 14934450 chr2R 14934542 14934549 5 106 2.5 0.0 1.2 2.3 115 chr2R 14934434 intron CG10253 - chr2R 14934492 intron CG10253 - chr2R 14934549 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-385 398 chr2R 14955646 14955701 chr2R 14955755 14955756 7 101 3.5 0.0 1.8 2.5 110 chr2R 14955646 intron aPKC - chr2R 14955701 intron aPKC - chr2R 14955756 intron aPKC - chr2R_7_14955001 chr2R_14955001 RAL-385 399 chr2R 14987384 14987414 chr2R 14987526 14987578 8 153 4.0 3.5 3.8 1.7 194 chr2R 14987384 intron pcs + chr2R 14987481 intron pcs + chr2R 14987578 intron pcs + chr2R_8_14985001 chr2R_14985001 RAL-385 400 chr2R 15004718 15004741 chr2R 15005058 15005080 jockey 8 344 3.5 1.5 2.5 2.3 362 chr2R 15004718 intergenic not near genes chr2R 15004899 intergenic not near genes chr2R 15005080 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-385 401 chr2R 15051062 15051103 chr2R 15051164 15051204 8 97 2.0 1.5 1.8 2.9 142 chr2R 15051062 intergenic not near genes chr2R 15051133 intergenic not near genes chr2R 15051204 intergenic not near genes chr2R_8_15050001 chr2R_15050001 RAL-385 402 chr2R 15084957 15085009 chr2R 15092026 15092051 297 8 7061 1.5 4.0 2.8 2.1 7094 chr2R 15084957 intergenic not near genes chr2R 15088504 intergenic not near genes chr2R 15092051 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-385 403 chr2R 15117107 15117141 chr2R 15117304 15117316 7 193 1.5 6.5 4.0 1.4 209 chr2R 15117107 intron chn + chr2R 15117212 intron chn + chr2R 15117316 intron chn + chr2R_7_15115001 chr2R_15115001 RAL-385 404 chr2R 15137953 15137967 chr2R 15138053 15138064 4 99 4.5 0.0 2.2 1.2 111 chr2R 15137953 intron chn + chr2R 15138008 intron chn + chr2R 15138064 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-385 405 chr2R 15137969 15137987 chr2R 15138048 15138085 9 90 4.5 0.0 2.2 2.8 116 chr2R 15137969 intron chn + chr2R 15138027 intron chn + chr2R 15138085 intron chn + chr2R_9_15135001 chr2R_15135001 RAL-385 406 chr2R 15460033 15460081 chr2R 15460129 15460177 7 95 4.5 6.5 5.5 1.1 144 chr2R 15460033 intron CG43729 + chr2R 15460105 intron CG43729 + chr2R 15460177 intron CG43729 + chr2R_7_15460001 chr2R_15460001 RAL-385 407 chr2R 15685343 15685395 chr2R 15685466 15685518 5 115 0.5 2.0 1.2 2.3 175 chr2R 15685343 intron,exon Ranbp11 +,CG30082 - chr2R 15685430 intron,intron Ranbp11 +,CG30082 - chr2R 15685518 intron,intron Ranbp11 +,CG30082 - chr2R_5_15685001 chr2R_15685001 RAL-385 408 chr2R 15720752 15720794 chr2R 15720868 15720905 4 115 2.0 0.5 1.2 1.8 153 chr2R 15720752 intergenic not near genes chr2R 15720828 intergenic not near genes chr2R 15720905 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-385 409 chr2R 15785848 15785896 chr2R 15785946 15785995 6 91 2.5 3.0 2.8 1.6 147 chr2R 15785848 intron Zasp52 - chr2R 15785922 intron Zasp52 - chr2R 15785995 intron Zasp52 - chr2R_6_15785001 chr2R_15785001 RAL-385 410 chr2R 16245406 16245423 chr2R 16245520 16245537 5 113 0.5 4.0 2.2 1.6 131 chr2R 16245406 intron CngA - chr2R 16245472 intron CngA - chr2R 16245537 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-385 411 chr2R 16352847 16352868 chr2R 16352950 16352971 6 101 3.0 3.5 3.2 1.4 124 chr2R 16352847 intergenic not near genes chr2R 16352909 intergenic not near genes chr2R 16352971 intergenic not near genes chr2R_6_16350001 chr2R_16350001 RAL-385 412 chr2R 16538071 16538090 chr2R 16538185 16538204 5 112 1.0 2.0 1.5 2.0 133 chr2R 16538071 intergenic not near genes chr2R 16538138 intergenic not near genes chr2R 16538204 intergenic not near genes chr2R_5_16535001 chr2R_16535001 RAL-385 413 chr2R 16539619 16539662 chr2R 16544848 16544891 copia 9 5229 3.0 2.5 2.8 2.4 5272 chr2R 16539619 intergenic not near genes chr2R 16542255 intergenic not near genes chr2R 16544891 intergenic not near genes chr2R_9_16540001 chr2R_16540001 RAL-385 414 chr2R 16546983 16547029 chr2R 16547083 16547109 5 89 1.0 0.0 0.5 3.3 126 chr2R 16546983 intergenic not near genes chr2R 16547046 intergenic not near genes chr2R 16547109 intergenic not near genes chr2R_5_16545001 chr2R_16545001 RAL-385 415 chr2R 16571863 16571905 chr2R 16571972 16572020 13 112 0.5 4.5 2.5 3.7 157 chr2R 16571863 intergenic CG4927 + chr2R 16571942 intergenic CG4927 + chr2R 16572020 intergenic CG4927 + chr2R_13_16570001 chr2R_16570001 RAL-385 416 chr2R 16732604 16732648 chr2R 16732710 16732744 4 99 0.5 0.5 0.5 2.7 140 chr2R 16732604 5` UTR CG30463 - chr2R 16732674 5` UTR CG30463 - chr2R 16732744 5` UTR CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-385 417 chr2R 16787469 16787488 chr2R 16787556 16787590 4 97 2.5 1.0 1.8 1.4 121 chr2R 16787469 intron CG5522 + chr2R 16787530 intron CG5522 + chr2R 16787590 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-385 418 chr2R 16981962 16982098 chr2R 16982095 16982196 5 131 0.0 0.0 0.0 5.0 234 chr2R 16981962 intron Cbp53E + chr2R 16982079 intron Cbp53E + chr2R 16982196 intron Cbp53E + chr2R_5_16980001 chr2R_16980001 RAL-385 419 chr2R 17397818 17397834 chr2R 17397919 17397947 4 105 3.0 4.0 3.5 0.9 129 chr2R 17397818 intron Sip1 + chr2R 17397882 intron Sip1 + chr2R 17397947 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-385 420 chr2R 17458986 17459035 chr2R 17459090 17459140 11 98 1.5 4.0 2.8 2.9 154 chr2R 17458986 intron CG14478 + chr2R 17459063 intron CG14478 + chr2R 17459140 intron CG14478 + chr2R_11_17455001 chr2R_17455001 RAL-385 421 chr2R 17470301 17470350 chr2R 17470401 17470446 7 96 2.5 1.0 1.8 2.5 145 chr2R 17470301 intron qkr54B + chr2R 17470374 intron qkr54B + chr2R 17470446 intron qkr54B + chr2R_7_17470001 chr2R_17470001 RAL-385 422 chr2R 17646314 17646346 chr2R 17646600 17646632 5 280 1.5 1.5 1.5 2.0 318 chr2R 17646314 intergenic not near genes chr2R 17646473 intergenic CCHa1-R - chr2R 17646632 intergenic CCHa1-R - chr2R_5_17645001 chr2R_17645001 RAL-385 423 chr2R 17655562 17655603 chr2R 17655794 17655829 4 228 0.5 2.5 1.5 1.6 267 chr2R 17655562 intron CCHa1-R - chr2R 17655696 intron CCHa1-R - chr2R 17655829 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-385 424 chr2R 17730632 17730674 chr2R 17730730 17730772 11 98 4.0 2.0 3.0 2.8 140 chr2R 17730632 intron,intron CG4975 +,CG4984 + chr2R 17730702 intron,intron CG4975 +,CG4984 + chr2R 17730772 intron,intron CG4975 +,CG4984 + chr2R_11_17730001 chr2R_17730001 RAL-385 425 chr2R 17764400 17764452 chr2R 17764523 17764575 6 123 0.5 4.0 2.2 1.9 175 chr2R 17764400 3` UTR CG5009 + chr2R 17764488 3` UTR CG5009 + chr2R 17764575 3` UTR OstDelta - chr2R_6_17760001 chr2R_17760001 RAL-385 426 chr2R 17782351 17782383 chr2R 17783574 17783606 pogo 8 1223 2.5 4.0 3.2 1.9 1255 chr2R 17782351 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783606 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-385 427 chr2R 17921439 17921454 chr2R 17921538 17921556 4 101 0.5 1.5 1.0 2.0 117 chr2R 17921439 intron Elk + chr2R 17921498 intron Elk + chr2R 17921556 intron Elk + chr2R_4_17920001 chr2R_17920001 RAL-385 428 chr2R 17996484 17996490 chr2R 17996572 17996590 4 99 2.0 0.5 1.2 1.8 106 chr2R 17996484 intron dpr13 - chr2R 17996537 intron dpr13 - chr2R 17996590 intron dpr13 - chr2R_4_17995001 chr2R_17995001 RAL-385 429 chr2R 18035406 18035428 chr2R 18035502 18035514 4 93 2.5 5.0 3.8 0.8 108 chr2R 18035406 intergenic not near genes chr2R 18035460 intergenic not near genes chr2R 18035514 intergenic not near genes chr2R_4_18035001 chr2R_18035001 RAL-385 430 chr2R 18042801 18042998 chr2R 18042938 18043111 4 131 0.0 0.0 0.0 4.0 310 chr2R 18042801 3` UTR CG5773 - chr2R 18042956 3` UTR CG5773 - chr2R 18043111 3` UTR CG5773 - chr2R_4_18040001 chr2R_18040001 RAL-385 431 chr2R 18045669 18045696 chr2R 18046041 18046068 jockey 5 372 3.0 7.5 5.2 0.8 399 chr2R 18045669 intergenic not near genes chr2R 18045868 intergenic not near genes chr2R 18046068 intergenic CG5767 - chr2R_5_18045001 chr2R_18045001 RAL-385 432 chr2R 18074590 18074617 chr2R 18074686 18074713 5 96 2.5 1.5 2.0 1.7 123 chr2R 18074590 intron CG34386 + chr2R 18074652 intron CG34386 + chr2R 18074713 intron CG34386 + chr2R_5_18070001 chr2R_18070001 RAL-385 433 chr2R 18111661 18111688 chr2R 18115549 18115551 F-element 6 3883 2.0 3.5 2.8 1.6 3890 chr2R 18111661 intergenic not near genes chr2R 18113606 intergenic not near genes chr2R 18115551 intergenic not near genes chr2R_6_18110001 chr2R_18110001 RAL-385 434 chr2R 18172531 18172572 chr2R 18172629 18172661 5 90 3.0 5.0 4.0 1.0 130 chr2R 18172531 5` UTR Dgp-1 - chr2R 18172596 5` UTR Dgp-1 - chr2R 18172661 intergenic Dgp-1 - chr2R_5_18170001 chr2R_18170001 RAL-385 435 chr2R 18174721 18174738 chr2R 18174800 18174810 6 90 5.0 5.5 5.2 1.0 89 chr2R 18174721 3` UTR CG10916 + chr2R 18174766 3` UTR CG10916 + chr2R 18174810 3` UTR CG10916 + chr2R_6_18170001 chr2R_18170001 RAL-385 436 chr2R 18245623 18245654 chr2R 18245703 18245750 6 94 0.0 4.0 2.0 2.0 127 chr2R 18245623 intergenic not near genes chr2R 18245686 intergenic CR44420 - chr2R 18245750 intergenic CR44420 - chr2R_6_18245001 chr2R_18245001 RAL-385 437 chr2R 18307556 18307606 chr2R 18307664 18307714 6 107 1.5 2.5 2.0 2.0 158 chr2R 18307556 intron sbb - chr2R 18307635 intron sbb - chr2R 18307714 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-385 438 chr2R 18358374 18358413 chr2R 18372606 18372631 roo 10 14228 3.5 3.5 3.5 2.2 14257 chr2R 18358374 intergenic not near genes chr2R 18365502 intergenic not near genes chr2R 18372631 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-385 439 chr2R 18486838 18486873 chr2R 18487117 18487144 4 278 5.5 4.0 4.8 0.7 306 chr2R 18486838 intron CG30116 - chr2R 18486991 intron CG30116 - chr2R 18487144 intron CG30116 - chr2R_4_18485001 chr2R_18485001 RAL-385 440 chr2R 18590887 18590897 chr2R 18600025 18600054 roo 5 9152 1.5 1.5 1.5 2.0 9167 chr2R 18590887 intron GEFmeso - chr2R 18595470 intron GEFmeso - chr2R 18600054 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-385 441 chr2R 18605119 18605158 chr2R 18605231 18605268 5 112 4.0 2.0 3.0 1.2 149 chr2R 18605119 intron GEFmeso - chr2R 18605194 intron GEFmeso - chr2R 18605268 intron GEFmeso - chr2R_5_18605001 chr2R_18605001 RAL-385 442 chr2R 18646392 18646434 chr2R 18646557 18646597 6 163 2.0 1.5 1.8 2.1 205 chr2R 18646392 intron SP2637 - chr2R 18646494 intron SP2637 - chr2R 18646597 intron SP2637 - chr2R_6_18645001 chr2R_18645001 RAL-385 443 chr2R 18785925 18785945 chr2R 18785997 18786043 4 90 2.0 1.0 1.5 1.6 118 chr2R 18785925 intron CG15080 + chr2R 18785984 intron CG15080 + chr2R 18786043 intron CG15080 + chr2R_4_18785001 chr2R_18785001 RAL-385 444 chr2R 18862288 18862339 chr2R 18862395 18862406 5 105 0.0 0.0 0.0 5.0 118 chr2R 18862288 intergenic Jheh3 - chr2R 18862347 intergenic Jheh3 - chr2R 18862406 intergenic Jheh3 -,CG43069 + chr2R_5_18860001 chr2R_18860001 RAL-385 445 chr2R 18885693 18885738 chr2R 18886188 18886205 5 481 1.5 0.5 1.0 2.5 512 chr2R 18885693 intron sano + chr2R 18885949 intron sano + chr2R 18886205 intron sano + chr2R_5_18885001 chr2R_18885001 RAL-385 446 chr2R 19385262 19385313 chr2R 19385565 19385616 7 302 1.5 2.0 1.8 2.5 354 chr2R 19385262 intergenic CG10073 + chr2R 19385439 intergenic CG10073 +,CG10081 + chr2R 19385616 intergenic CG10081 + chr2R_7_19385001 chr2R_19385001 RAL-385 447 chr2R 19498458 19498504 chr2R 19498555 19498575 4 88 0.0 1.0 0.5 2.7 117 chr2R 19498458 intron CG15120 + chr2R 19498516 intron CG15120 + chr2R 19498575 intron CG15120 + chr2R_4_19495001 chr2R_19495001 RAL-385 448 chr2R 19588730 19588781 chr2R 19588828 19588862 9 96 1.5 3.0 2.2 2.8 132 chr2R 19588730 intron sm - chr2R 19588796 intron sm - chr2R 19588862 intron sm - chr2R_9_19585001 chr2R_19585001 RAL-385 449 chr2R 19601254 19601262 chr2R 19601364 19601372 4 110 5.0 0.5 2.8 1.1 118 chr2R 19601254 intron sm - chr2R 19601313 intron sm - chr2R 19601372 intron sm - chr2R_4_19600001 chr2R_19600001 RAL-385 450 chr2R 19774010 19774022 chr2R 19774143 19774155 4 133 1.5 3.5 2.5 1.1 145 chr2R 19774010 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774155 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-385 451 chr2R 19776589 19776612 chr2R 19779929 19779955 jockey 4 3342 1.0 3.5 2.2 1.2 3366 chr2R 19776589 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779955 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-385 452 chr2R 19776618 19776627 chr2R 19779927 19779960 jockey 6 3334 1.0 2.5 1.8 2.1 3342 chr2R 19776618 intergenic not near genes chr2R 19778289 intergenic not near genes chr2R 19779960 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-385 453 chr2R 19807659 19807701 chr2R 19807760 19807797 4 100 0.5 0.0 0.2 3.3 138 chr2R 19807659 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807797 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-385 454 chr2R 19869768 19869805 chr2R 19869867 19869899 4 93 1.5 1.5 1.5 1.6 131 chr2R 19869768 intergenic CR44460 + chr2R 19869834 intergenic CR44460 + chr2R 19869899 intergenic CR44460 + chr2R_4_19865001 chr2R_19865001 RAL-385 455 chr2R 20223960 20223985 chr2R 20224034 20224090 5 95 3.0 1.5 2.2 1.6 130 chr2R 20223960 intergenic not near genes chr2R 20224025 intergenic not near genes chr2R 20224090 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-385 456 chr2R 20578635 20578685 chr2R 20578744 20578774 7 101 2.0 0.5 1.2 3.2 139 chr2R 20578635 intron qsm - chr2R 20578704 intron qsm - chr2R 20578774 intron qsm - chr2R_7_20575001 chr2R_20575001 RAL-385 457 chr2R 20601731 20601750 chr2R 20601808 20601825 4 90 1.0 2.5 1.8 1.4 94 chr2R 20601731 intron bl + chr2R 20601778 intron bl + chr2R 20601825 intron bl + chr2R_4_20600001 chr2R_20600001 RAL-385 458 chr2R 20783318 20783330 chr2R 20788095 20788122 F-element 4 4781 1.0 1.5 1.2 1.8 4804 chr2R 20783318 intergenic not near genes chr2R 20785720 intergenic not near genes chr2R 20788122 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-385 459 chr2R 20962889 20962907 chr2R 20963007 20963025 6 115 1.5 2.0 1.8 2.1 136 chr2R 20962889 intergenic not near genes chr2R 20962957 intergenic not near genes chr2R 20963025 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-385 460 chr2R 20962909 20962934 chr2R 20963005 20963052 9 113 1.0 2.0 1.5 3.6 143 chr2R 20962909 intergenic not near genes chr2R 20962980 intergenic not near genes chr2R 20963052 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-385 461 chr2R 20967010 20967048 chr2R 20967107 20967145 5 95 2.5 0.0 1.2 2.3 135 chr2R 20967010 intergenic not near genes chr2R 20967078 intergenic not near genes chr2R 20967145 intergenic not near genes chr2R_5_20965001 chr2R_20965001 RAL-385 462 chr2R 21113473 21113485 chr2R 21113577 21113594 5 107 3.5 1.5 2.5 1.4 121 chr2R 21113473 intron ktub + chr2R 21113534 intron ktub + chr2R 21113594 intron ktub + chr2R_5_21110001 chr2R_21110001 RAL-385 463 chr2R 21188224 21188250 chr2R 21188300 21188351 4 88 2.0 3.5 2.8 1.1 127 chr2R 21188224 exon tud + chr2R 21188288 intron tud + chr2R 21188351 intron tud + chr2R_4_21185001 chr2R_21185001 RAL-385 464 chr2R 21251821 21251848 chr2R 21252068 21252094 5 246 2.5 3.0 2.8 1.3 273 chr2R 21251821 intergenic not near genes chr2R 21251958 intergenic not near genes chr2R 21252094 intergenic not near genes chr2R_5_21250001 chr2R_21250001 RAL-385 465 chr2R 21507188 21507235 chr2R 21507284 21507311 6 88 0.5 0.5 0.5 4.0 123 chr2R 21507188 intron MESK2 + chr2R 21507250 intron MESK2 + chr2R 21507311 intron MESK2 + chr2R_6_21505001 chr2R_21505001 RAL-385 466 chr2R 21708222 21708246 chr2R 21709903 21709927 4 1681 7.5 4.0 5.8 0.6 1705 chr2R 21708222 intron HmgD + chr2R 21709074 intron,3` UTR HmgD +,CR44749 - chr2R 21709927 intron,3` UTR HmgD +,CG30403 - chr2R_4_21705001 chr2R_21705001 RAL-385 467 chr2R 21708164 21708172 chr2R 21709946 21709999 6 1794 10.0 5.0 7.5 0.7 1835 chr2R 21708164 intron HmgD + chr2R 21709082 intron,3` UTR HmgD +,CR44749 - chr2R 21709999 intron,3` UTR HmgD +,CG30403 - chr2R_6_21705001 chr2R_21705001 RAL-385 468 chr2R 21753066 21753111 chr2R 21753567 21753615 roo 5 497 1.0 0.5 0.8 2.8 549 chr2R 21753066 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753615 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-385 469 chr2R 22072690 22072715 chr2R 22072775 22072804 11 96 2.0 0.5 1.2 5.0 114 chr2R 22072690 intron CG11474 - chr2R 22072747 intron CG11474 - chr2R 22072804 exon CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-385 470 chr2R 22109272 22109313 chr2R 22109369 22109394 12 93 2.0 3.5 2.8 3.2 122 chr2R 22109272 intron Vrp1 - chr2R 22109333 intron Vrp1 - chr2R 22109394 intron Vrp1 - chr2R_12_22105001 chr2R_22105001 RAL-385 471 chr2R 22349702 22349721 chr2R 22351496 22351525 jockey 4 1801 1.5 1.0 1.2 1.8 1823 chr2R 22349702 intron Liprin-gamma - chr2R 22350614 intron Liprin-gamma - chr2R 22351525 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-385 472 chr2R 22465315 22465352 chr2R 22465518 22465537 BS 10 212 4.0 4.0 4.0 2.0 222 chr2R 22465315 intron CG10384 + chr2R 22465426 intron CG10384 + chr2R 22465537 intron CG10384 + chr2R_10_22465001 chr2R_22465001 RAL-385 473 chr2R 22518112 22518133 chr2R 22518192 22518228 4 90 0.5 0.5 0.5 2.7 116 chr2R 22518112 intron px - chr2R 22518170 intron px - chr2R 22518228 intron px - chr2R_4_22515001 chr2R_22515001 RAL-385 474 chr2R 22774949 22774977 chr2R 22775388 22775395 jockey 4 428 4.5 2.5 3.5 0.9 446 chr2R 22774949 intron CG42260 - chr2R 22775172 intron CG42260 - chr2R 22775395 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-385 475 chr2R 23295410 23295443 chr2R 23295537 23295551 4 122 2.5 2.0 2.2 1.2 141 chr2R 23295410 intergenic not near genes chr2R 23295480 intergenic not near genes chr2R 23295551 intergenic not near genes chr2R_4_23295001 chr2R_23295001 RAL-385 476 chr2R 23422634 23422666 chr2R 23422728 23422753 4 94 4.0 0.0 2.0 1.3 119 chr2R 23422634 intron CG9815 - chr2R 23422694 intron CG9815 - chr2R 23422753 intron CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-385 477 chr2R 23508900 23508941 chr2R 23509036 23509078 5 137 3.5 2.0 2.8 1.3 178 chr2R 23508900 intergenic not near genes chr2R 23508989 intergenic not near genes chr2R 23509078 intergenic not near genes chr2R_5_23505001 chr2R_23505001 RAL-385 478 chr2R 23563876 23563916 chr2R 23563976 23564002 9 94 5.5 3.0 4.2 1.7 126 chr2R 23563876 3` UTR Pi3K59F + chr2R 23563939 3` UTR Pi3K59F + chr2R 23564002 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_9_23560001 chr2R_23560001 RAL-385 479 chr2R 23748180 23748190 chr2R 23748319 23748326 7 138 5.5 2.5 4.0 1.4 146 chr2R 23748180 3` UTR CG13560 + chr2R 23748253 3` UTR CG13560 + chr2R 23748326 3` UTR CG13560 + chr2R_7_23745001 chr2R_23745001 RAL-385 480 chr2R 23748205 23748226 chr2R 23748317 23748357 6 132 3.0 2.0 2.5 1.7 152 chr2R 23748205 3` UTR CG13560 + chr2R 23748281 3` UTR CG13560 + chr2R 23748357 3` UTR CG13560 + chr2R_6_23745001 chr2R_23745001 RAL-385 481 chr2R 23758310 23758344 chr2R 23758403 23758433 5 94 0.5 1.5 1.0 2.5 123 chr2R 23758310 intron CG9850 - chr2R 23758372 intron CG9850 - chr2R 23758433 intron CG9850 - chr2R_5_23755001 chr2R_23755001 RAL-385 482 chr2R 23986493 23986533 chr2R 23986592 23986610 5 94 1.0 3.0 2.0 1.7 117 chr2R 23986493 intron Phm - chr2R 23986552 intron Phm - chr2R 23986610 intron Phm - chr2R_5_23985001 chr2R_23985001 RAL-385 483 chr2R 24031367 24031394 chr2R 24031471 24031498 13 103 8.0 4.0 6.0 1.9 131 chr2R 24031367 5` UTR CG30172 - chr2R 24031432 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_13_24030001 chr2R_24030001 RAL-385 484 chr2R 24177222 24177269 chr2R 24184727 24184773 412 7 7503 1.0 4.0 2.5 2.0 7551 chr2R 24177222 3` UTR Nop60B + chr2R 24180998 intron Nop60B + chr2R 24184773 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-385 485 chr2R 24353414 24353455 chr2R 24361795 24361825 roo 7 8378 4.5 1.0 2.8 1.8 8411 chr2R 24353414 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361825 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-385 486 chr2R 24493066 24493075 chr2R 24493175 24493180 4 107 9.0 2.5 5.8 0.6 114 chr2R 24493066 intergenic CG13590 -,CG13589 - chr2R 24493123 intergenic CG13590 -,CG13589 - chr2R 24493180 intergenic CG13590 -,CG13589 - chr2R_4_24490001 chr2R_24490001 RAL-385 487 chr2R 24542574 24542627 chr2R 24542689 24542718 7 108 0.5 1.0 0.8 3.9 144 chr2R 24542574 intron,intron CG4622 -,ITP + chr2R 24542646 intron,intron CG4622 -,ITP + chr2R 24542718 intron,intron CG4622 -,ITP + chr2R_7_24540001 chr2R_24540001 RAL-385 488 chr2R 24727905 24727915 chr2R 24735414 24735433 mdg1 4 7520 0.0 5.0 2.5 1.1 7528 chr2R 24727905 intron Mid1 - chr2R 24731669 intron Mid1 - chr2R 24735433 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-385 489 chr2R 24884047 24884078 chr2R 24884139 24884180 11 96 0.5 2.5 1.5 4.4 133 chr2R 24884047 intron NKAIN + chr2R 24884114 intron NKAIN + chr2R 24884180 intron NKAIN + chr2R_11_24880001 chr2R_24880001 RAL-385 490 chr2R 25022624 25022669 chr2R 25022723 25022761 10 101 2.5 7.0 4.8 1.7 137 chr2R 25022624 intron uzip + chr2R 25022692 intron uzip + chr2R 25022761 intron uzip + chr2R_10_25020001 chr2R_25020001 RAL-385 491 chr2R 25101272 25101305 chr2R 25101388 25101401 4 110 2.5 1.5 2.0 1.3 129 chr2R 25101272 intron lov - chr2R 25101336 intron lov - chr2R 25101401 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-385 492 chr2R 25122957 25122989 chr2R 25123049 25123088 7 98 2.0 1.0 1.5 2.8 131 chr2R 25122957 intron lov - chr2R 25123022 intron lov - chr2R 25123088 intron lov - chr2R_7_25120001 chr2R_25120001 RAL-385 493 chr2R 25141642 25141682 chr2R 25159338 25159392 roo 5 17704 2.0 1.5 1.8 1.8 17750 chr2R 25141642 intergenic not near genes chr2R 25150517 intergenic not near genes chr2R 25159392 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-385 494 chr2R 25181099 25181131 chr2R 25181200 25181248 5 110 0.5 2.0 1.2 2.3 149 chr2R 25181099 intergenic not near genes chr2R 25181174 intergenic not near genes chr2R 25181248 intergenic not near genes chr2R_5_25180001 chr2R_25180001 RAL-385 495 chr2R 25236016 25236039 chr2R 25236147 25236169 5 129 2.0 0.5 1.2 2.3 153 chr2R 25236016 intron CG9380 - chr2R 25236092 intron CG9380 - chr2R 25236169 intron CG9380 - chr2R_5_25235001 chr2R_25235001 RAL-385 496 chr3L 110192 110238 chr3L 119379 119410 roo 11 9183 1.0 2.5 1.8 3.9 9218 chr3L 110192 intergenic not near genes chr3L 114801 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_11_110001 chr3L_110001 RAL-385 497 chr3L 391899 391941 chr3L 392012 392054 10 113 0.0 1.5 0.8 5.6 155 chr3L 391899 intron trh - chr3L 391976 intron trh - chr3L 392054 intron,3` UTR trh -,CR45378 - chr3L_10_390001 chr3L_390001 RAL-385 498 chr3L 402676 402717 chr3L 409749 409784 297 8 7066 2.0 4.0 3.0 2.0 7108 chr3L 402676 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409784 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-385 499 chr3L 477869 477903 chr3L 477972 478006 5 102 0.0 0.0 0.0 5.0 137 chr3L 477869 intron klar - chr3L 477938 intron klar - chr3L 478006 intron klar - chr3L_5_475001 chr3L_475001 RAL-385 500 chr3L 592946 592969 chr3L 593042 593065 5 96 2.5 5.5 4.0 1.0 119 chr3L 592946 intergenic MED14 + chr3L 593006 intergenic MED14 + chr3L 593065 intergenic MED14 + chr3L_5_590001 chr3L_590001 RAL-385 501 chr3L 618422 618440 chr3L 618567 618584 5 145 3.0 2.0 2.5 1.4 162 chr3L 618422 intergenic not near genes chr3L 618503 intergenic not near genes chr3L 618584 intergenic not near genes chr3L_5_615001 chr3L_615001 RAL-385 502 chr3L 642455 642501 chr3L 642565 642585 5 98 2.0 3.5 2.8 1.3 130 chr3L 642455 5` UTR CR43334 + chr3L 642520 5` UTR CR43334 + chr3L 642585 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-385 503 chr3L 705880 705922 chr3L 705996 706012 9 113 3.0 4.5 3.8 1.9 132 chr3L 705880 intergenic CG13895 -,CR44514 + chr3L 705946 intergenic CG13895 -,CR44514 + chr3L 706012 3` UTR CG13895 - chr3L_9_705001 chr3L_705001 RAL-385 504 chr3L 822072 822095 chr3L 822169 822183 4 92 0.0 2.5 1.2 1.8 111 chr3L 822072 intergenic not near genes chr3L 822128 intergenic not near genes chr3L 822183 intergenic not near genes chr3L_4_820001 chr3L_820001 RAL-385 505 chr3L 925180 925208 chr3L 932606 932632 mdg1 4 7428 2.5 3.0 2.8 1.1 7452 chr3L 925180 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-385 506 chr3L 933923 933936 chr3L 934046 934059 5 121 1.5 4.0 2.8 1.3 136 chr3L 933923 intron Glut1 + chr3L 933991 intron Glut1 + chr3L 934059 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-385 507 chr3L 939762 939778 chr3L 940903 940919 jockey 4 1137 2.5 2.0 2.2 1.2 1157 chr3L 939762 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940919 intron Glut1 + chr3L_4_940001 chr3L_940001 RAL-385 508 chr3L 939786 939797 chr3L 940897 940902 jockey 5 1128 2.0 2.0 2.0 1.7 1116 chr3L 939786 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940902 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-385 509 chr3L 947598 947647 chr3L 947802 947851 11 202 3.0 0.5 1.8 3.9 253 chr3L 947598 intron Glut1 + chr3L 947724 intron Glut1 + chr3L 947851 intron Glut1 + chr3L_11_945001 chr3L_945001 RAL-385 510 chr3L 949880 949886 chr3L 949985 949985 4 103 7.5 6.0 6.8 0.5 105 chr3L 949880 intron Glut1 + chr3L 949932 intron Glut1 + chr3L 949985 intron Glut1 + chr3L_4_945001 chr3L_945001 RAL-385 511 chr3L 949890 949915 chr3L 949980 950015 4 100 4.5 5.0 4.8 0.7 125 chr3L 949890 intron Glut1 + chr3L 949952 intron Glut1 + chr3L 950015 intron Glut1 + chr3L_4_945001 chr3L_945001 RAL-385 512 chr3L 1039293 1039334 chr3L 1039771 1039801 6 472 2.0 0.5 1.2 2.7 508 chr3L 1039293 intron bab1 - chr3L 1039547 intron bab1 - chr3L 1039801 exon bab1 - chr3L_6_1035001 chr3L_1035001 RAL-385 513 chr3L 1040531 1040581 chr3L 1040635 1040650 7 89 2.0 2.0 2.0 2.3 119 chr3L 1040531 intron bab1 - chr3L 1040590 intron bab1 - chr3L 1040650 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-385 514 chr3L 1103976 1104014 chr3L 1104187 1104224 4 210 2.0 1.5 1.8 1.4 248 chr3L 1103976 intergenic not near genes chr3L 1104100 intergenic not near genes chr3L 1104224 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-385 515 chr3L 1154121 1154140 chr3L 1163286 1163297 roo 4 9164 0.5 0.5 0.5 2.7 9176 chr3L 1154121 intron bab2 - chr3L 1158709 intron bab2 - chr3L 1163297 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-385 516 chr3L 1310994 1311029 chr3L 1315857 1315870 4 4859 7.5 9.5 8.5 0.4 4876 chr3L 1310994 exon CG2469 + chr3L 1313432 intergenic CG9186 -,CG9153 + chr3L 1315870 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-385 517 chr3L 1396734 1396753 chr3L 1396822 1396849 7 96 40.0 40.5 40.2 0.2 115 chr3L 1396734 intron Ptp61F - chr3L 1396792 intron Ptp61F - chr3L 1396849 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-385 518 chr3L 1506001 1506031 chr3L 1513605 1513610 17.6 6 7606 1.5 4.5 3.0 1.5 7609 chr3L 1506001 intron,intron Psa +,cue - chr3L 1509806 intron,intron Psa +,cue - chr3L 1513610 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-385 519 chr3L 1674336 1674357 chr3L 1674413 1674451 4 92 0.5 1.5 1.0 2.0 115 chr3L 1674336 intergenic CG7991 + chr3L 1674394 intergenic CG7991 + chr3L 1674451 intergenic CG7991 + chr3L_4_1670001 chr3L_1670001 RAL-385 520 chr3L 1740847 1740882 chr3L 1741098 1741136 pogo 5 246 2.0 4.0 3.0 1.2 289 chr3L 1740847 intron Gk + chr3L 1740992 intron Gk + chr3L 1741136 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-385 521 chr3L 1817567 1817600 chr3L 1817672 1817685 8 102 2.5 4.5 3.5 1.8 118 chr3L 1817567 intron GV1 + chr3L 1817626 intron GV1 + chr3L 1817685 intron GV1 + chr3L_8_1815001 chr3L_1815001 RAL-385 522 chr3L 2108232 2108278 chr3L 2113456 2113500 copia 12 5224 3.0 4.0 3.5 2.7 5268 chr3L 2108232 intron sls - chr3L 2110866 intron sls - chr3L 2113500 intron sls - chr3L_12_2110001 chr3L_2110001 RAL-385 523 chr3L 2163978 2164106 chr3L 2164065 2164273 5 141 0.0 0.0 0.0 5.0 295 chr3L 2163978 intergenic CG15822 - chr3L 2164126 intergenic CG15822 - chr3L 2164273 intergenic CG15822 - chr3L_5_2160001 chr3L_2160001 RAL-385 524 chr3L 2199791 2199819 chr3L 2199887 2199905 4 94 0.0 4.0 2.0 1.3 114 chr3L 2199791 intergenic not near genes chr3L 2199848 intergenic not near genes chr3L 2199905 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-385 525 chr3L 2200911 2200935 chr3L 2201007 2201031 5 94 0.5 2.5 1.5 2.0 120 chr3L 2200911 intergenic not near genes chr3L 2200971 intergenic not near genes chr3L 2201031 intergenic not near genes chr3L_5_2200001 chr3L_2200001 RAL-385 526 chr3L 2300744 2300771 chr3L 2300855 2300882 8 111 3.0 3.5 3.2 1.9 138 chr3L 2300744 3` UTR MsR2 + chr3L 2300813 3` UTR MsR2 + chr3L 2300882 3` UTR MsR2 + chr3L_8_2300001 chr3L_2300001 RAL-385 527 chr3L 2515379 2515422 chr3L 2515481 2515524 5 102 2.5 2.0 2.2 1.6 145 chr3L 2515379 intron Spn - chr3L 2515452 intron Spn - chr3L 2515524 intron Spn - chr3L_5_2515001 chr3L_2515001 RAL-385 528 chr3L 2521726 2521749 chr3L 2521895 2521914 5 168 3.5 0.0 1.8 1.8 188 chr3L 2521726 intron Spn - chr3L 2521820 intron Spn - chr3L 2521914 intron Spn - chr3L_5_2520001 chr3L_2520001 RAL-385 529 chr3L 2561507 2561559 chr3L 2561604 2561626 9 89 4.0 3.5 3.8 1.9 119 chr3L 2561507 intron msn - chr3L 2561566 intron msn - chr3L 2561626 intron msn - chr3L_9_2560001 chr3L_2560001 RAL-385 530 chr3L 2590886 2590900 chr3L 2590981 2591009 4 110 5.5 1.5 3.5 0.9 123 chr3L 2590886 intron dos + chr3L 2590948 intron dos + chr3L 2591009 intron dos + chr3L_4_2590001 chr3L_2590001 RAL-385 531 chr3L 2719519 2719556 chr3L 2719639 2719678 9 120 4.0 3.5 3.8 1.9 159 chr3L 2719519 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719678 3` UTR Mrtf - chr3L_9_2715001 chr3L_2715001 RAL-385 532 chr3L 2863776 2863814 chr3L 2863876 2863878 7 93 2.5 0.5 1.5 2.8 102 chr3L 2863776 intron CG43444 - chr3L 2863827 intron CG43444 - chr3L 2863878 intron CG43444 - chr3L_7_2860001 chr3L_2860001 RAL-385 533 chr3L 3019538 3019567 chr3L 3019671 3019688 5 129 2.0 4.5 3.2 1.2 150 chr3L 3019538 intergenic not near genes chr3L 3019613 intergenic not near genes chr3L 3019688 intergenic not near genes chr3L_5_3015001 chr3L_3015001 RAL-385 534 chr3L 3341251 3341292 chr3L 3341351 3341392 6 95 1.0 4.0 2.5 1.7 141 chr3L 3341251 intron kst + chr3L 3341322 intron kst + chr3L 3341392 intron kst + chr3L_6_3340001 chr3L_3340001 RAL-385 535 chr3L 3436276 3436308 chr3L 3436375 3436407 4 99 3.0 3.5 3.2 1.0 131 chr3L 3436276 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436407 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-385 536 chr3L 3470136 3470188 chr3L 3470232 3470284 6 96 0.0 2.5 1.2 2.7 148 chr3L 3470136 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470284 intron CG14971 - chr3L_6_3470001 chr3L_3470001 RAL-385 537 chr3L 3573156 3573193 chr3L 3573253 3573296 5 98 2.5 0.5 1.5 2.0 140 chr3L 3573156 intron Eip63E + chr3L 3573226 intron Eip63E + chr3L 3573296 intron Eip63E + chr3L_5_3570001 chr3L_3570001 RAL-385 538 chr3L 3627321 3627328 chr3L 3627433 3627440 4 112 5.5 0.0 2.8 1.1 119 chr3L 3627321 intron dar1 + chr3L 3627380 intron dar1 + chr3L 3627440 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-385 539 chr3L 3766722 3766742 chr3L 3766828 3766833 4 102 2.0 2.0 2.0 1.3 111 chr3L 3766722 intron CG32264 - chr3L 3766778 intron CG32264 - chr3L 3766833 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-385 540 chr3L 3793004 3793043 chr3L 3793164 3793203 4 158 1.5 0.0 0.8 2.2 199 chr3L 3793004 intron CG32264 - chr3L 3793104 intron CG32264 - chr3L 3793203 intron CG32264 - chr3L_4_3790001 chr3L_3790001 RAL-385 541 chr3L 3797223 3797251 chr3L 3797326 3797348 7 102 1.0 2.5 1.8 2.5 125 chr3L 3797223 intron CG32264 - chr3L 3797286 intron CG32264 - chr3L 3797348 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-385 542 chr3L 3926885 3926903 chr3L 3926988 3927006 4 100 1.5 2.0 1.8 1.4 121 chr3L 3926885 intron Eip63F-1 - chr3L 3926946 intron Eip63F-1 - chr3L 3927006 intron Eip63F-1 - chr3L_4_3925001 chr3L_3925001 RAL-385 543 chr3L 3953650 3953675 chr3L 3954024 3954048 5 371 0.5 0.0 0.2 4.2 398 chr3L 3953650 intergenic not near genes chr3L 3953849 intergenic CG12605 - chr3L 3954048 intergenic CG12605 - chr3L_5_3950001 chr3L_3950001 RAL-385 544 chr3L 4099468 4099492 chr3L 4099562 4099593 11 100 2.0 3.5 2.8 2.9 125 chr3L 4099468 intron CG14995 - chr3L 4099530 intron CG14995 - chr3L 4099593 intron CG14995 - chr3L_11_4095001 chr3L_4095001 RAL-385 545 chr3L 4146806 4146826 chr3L 4146907 4146928 8 101 0.5 2.0 1.2 3.6 122 chr3L 4146806 intergenic not near genes chr3L 4146867 intergenic not near genes chr3L 4146928 intergenic not near genes chr3L_8_4145001 chr3L_4145001 RAL-385 546 chr3L 4188164 4188212 chr3L 4188263 4188311 7 96 1.5 2.5 2.0 2.3 147 chr3L 4188164 intron CG18675 + chr3L 4188238 intron CG18675 + chr3L 4188311 intron CG18675 + chr3L_7_4185001 chr3L_4185001 RAL-385 547 chr3L 4214524 4214538 chr3L 4214686 4214692 5 160 7.5 4.5 6.0 0.7 168 chr3L 4214524 intron CG43367 + chr3L 4214608 intron CG43367 + chr3L 4214692 intron CG43367 + chr3L_5_4210001 chr3L_4210001 RAL-385 548 chr3L 4214541 4214548 chr3L 4214684 4214701 5 156 5.0 4.0 4.5 0.9 160 chr3L 4214541 intron CG43367 + chr3L 4214621 intron CG43367 + chr3L 4214701 intron CG43367 + chr3L_5_4210001 chr3L_4210001 RAL-385 549 chr3L 4328733 4328760 chr3L 4336250 4336278 412 4 7518 1.5 1.5 1.5 1.6 7545 chr3L 4328733 intron Cip4 - chr3L 4332506 intron Cip4 - chr3L 4336278 exon Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-385 550 chr3L 4341330 4341335 chr3L 21448026 21448026 8 17106692 9.0 10.0 9.5 0.8 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_8_12890001 chr3L_12890001 RAL-385 551 chr3L 4384885 4384917 chr3L 4384998 4385020 9 111 2.0 3.5 2.8 2.4 135 chr3L 4384885 5` UTR slow + chr3L 4384952 intron slow + chr3L 4385020 intron slow + chr3L_9_4380001 chr3L_4380001 RAL-385 552 chr3L 4553582 4553629 chr3L 4553684 4553703 7 88 1.0 2.5 1.8 2.5 121 chr3L 4553582 intergenic CG11357 + chr3L 4553642 intergenic CG11357 + chr3L 4553703 intergenic CG11357 + chr3L_7_4550001 chr3L_4550001 RAL-385 553 chr3L 4700178 4700203 chr3L 4700539 4700565 6 362 0.0 2.5 1.2 2.7 387 chr3L 4700178 intron RhoGEF64C + chr3L 4700372 intron RhoGEF64C + chr3L 4700565 intron RhoGEF64C + chr3L_6_4700001 chr3L_4700001 RAL-385 554 chr3L 4767480 4767511 chr3L 4767556 4767601 5 87 3.5 2.0 2.8 1.3 121 chr3L 4767480 intron RhoGEF64C + chr3L 4767540 intron RhoGEF64C + chr3L 4767601 intron RhoGEF64C + chr3L_5_4765001 chr3L_4765001 RAL-385 555 chr3L 5045468 5045486 chr3L 5050241 5050287 Doc 6 4791 1.5 3.0 2.2 1.9 4819 chr3L 5045468 intron Con - chr3L 5047878 intron Con - chr3L 5050287 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-385 556 chr3L 5103592 5103608 chr3L 5103692 5103708 4 100 3.0 0.0 1.5 1.6 116 chr3L 5103592 intergenic not near genes chr3L 5103650 intergenic not near genes chr3L 5103708 intergenic not near genes chr3L_4_5100001 chr3L_5100001 RAL-385 557 chr3L 5104475 5104497 chr3L 5124628 5124635 7 20150 5.5 3.0 4.2 1.3 20160 chr3L 5104475 intergenic not near genes chr3L 5114555 intergenic not near genes chr3L 5124635 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-385 558 chr3L 5164628 5164665 chr3L 5164714 5164761 6 94 2.5 2.5 2.5 1.7 133 chr3L 5164628 intron shep - chr3L 5164694 intron shep - chr3L 5164761 intron shep - chr3L_6_5160001 chr3L_5160001 RAL-385 559 chr3L 5220822 5220859 chr3L 5220923 5220974 11 109 1.0 2.0 1.5 4.4 152 chr3L 5220822 intron shep - chr3L 5220898 intron shep - chr3L 5220974 intron shep - chr3L_11_5220001 chr3L_5220001 RAL-385 560 chr3L 5271182 5271189 chr3L 5271280 5271287 4 98 0.0 0.0 0.0 4.0 105 chr3L 5271182 intron shep - chr3L 5271234 intron shep - chr3L 5271287 intron shep - chr3L_4_5270001 chr3L_5270001 RAL-385 561 chr3L 5396454 5396486 chr3L 5396561 5396593 5 107 2.0 2.5 2.2 1.6 139 chr3L 5396454 intergenic not near genes chr3L 5396524 intergenic not near genes chr3L 5396593 intergenic not near genes chr3L_5_5395001 chr3L_5395001 RAL-385 562 chr3L 5485045 5485062 chr3L 5485130 5485163 5 97 2.0 1.5 1.8 1.8 118 chr3L 5485045 intergenic not near genes chr3L 5485104 intergenic not near genes chr3L 5485163 intergenic not near genes chr3L_5_5485001 chr3L_5485001 RAL-385 563 chr3L 5537707 5537751 chr3L 5538068 5538098 jockey 5 355 2.5 2.0 2.2 1.6 391 chr3L 5537707 intergenic not near genes chr3L 5537902 intergenic not near genes chr3L 5538098 intergenic CG10625 - chr3L_5_5535001 chr3L_5535001 RAL-385 564 chr3L 5910023 5910056 chr3L 5910278 5910317 pogo 6 260 5.5 4.5 5.0 1.0 294 chr3L 5910023 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910317 intron CG13288 + chr3L_6_5910001 chr3L_5910001 RAL-385 565 chr3L 6001673 6001708 chr3L 6004393 6004424 jockey 4 2719 1.0 0.0 0.5 2.7 2751 chr3L 6001673 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004424 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-385 566 chr3L 6040375 6040388 chr3L 6042724 6042764 Doc 8 2369 1.5 0.5 1.0 4.0 2389 chr3L 6040375 intergenic Jon65Aiv + chr3L 6041570 intergenic not near genes chr3L 6042764 intergenic not near genes chr3L_8_6040001 chr3L_6040001 RAL-385 567 chr3L 6064997 6065039 chr3L 6065094 6065136 9 96 4.5 4.0 4.2 1.7 139 chr3L 6064997 intergenic not near genes chr3L 6065066 intergenic not near genes chr3L 6065136 intergenic not near genes chr3L_9_6065001 chr3L_6065001 RAL-385 568 chr3L 6116676 6116712 chr3L 6116781 6116787 5 99 2.5 0.0 1.2 2.3 111 chr3L 6116676 intron Ets65A + chr3L 6116732 intron Ets65A + chr3L 6116787 intron Ets65A + chr3L_5_6115001 chr3L_6115001 RAL-385 569 chr3L 6220911 6220942 chr3L 6230078 6230114 roo 5 9168 2.5 2.0 2.2 1.6 9203 chr3L 6220911 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230114 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-385 570 chr3L 6268103 6268129 chr3L 6268299 6268317 7 192 0.5 3.5 2.0 2.3 214 chr3L 6268103 intergenic not near genes chr3L 6268210 intergenic not near genes chr3L 6268317 intergenic not near genes chr3L_7_6265001 chr3L_6265001 RAL-385 571 chr3L 6335000 6335037 chr3L 6335481 6335528 297 4 488 0.0 0.5 0.2 3.3 528 chr3L 6335000 intron CG13300 - chr3L 6335264 intron CG13300 - chr3L 6335528 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-385 572 chr3L 6362370 6362405 chr3L 6362467 6362502 6 97 1.0 0.5 0.8 3.3 132 chr3L 6362370 intergenic not near genes chr3L 6362436 intergenic not near genes chr3L 6362502 intergenic not near genes chr3L_6_6360001 chr3L_6360001 RAL-385 573 chr3L 6466002 6466041 chr3L 6466107 6466142 5 103 2.0 1.0 1.5 2.0 140 chr3L 6466002 intron CG42747 + chr3L 6466072 intron CG42747 + chr3L 6466142 intron CG42747 + chr3L_5_6465001 chr3L_6465001 RAL-385 574 chr3L 6652061 6652105 chr3L 6652159 6652203 8 93 1.5 4.0 2.8 2.1 142 chr3L 6652061 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652203 intergenic not near genes chr3L_8_6650001 chr3L_6650001 RAL-385 575 chr3L 6729275 6729318 chr3L 6729377 6729420 10 98 1.0 1.5 1.2 4.5 145 chr3L 6729275 3` UTR dikar - chr3L 6729348 3` UTR dikar - chr3L 6729420 3` UTR dikar - chr3L_10_6725001 chr3L_6725001 RAL-385 576 chr3L 6887506 6887544 chr3L 6895018 6895056 roo 10 7512 1.5 2.5 2.0 3.3 7550 chr3L 6887506 intergenic not near genes chr3L 6891281 intergenic not near genes chr3L 6895056 intergenic not near genes chr3L_10_6890001 chr3L_6890001 RAL-385 577 chr3L 6907995 6908047 chr3L 6908100 6908145 6 95 1.0 0.0 0.5 4.0 150 chr3L 6907995 intergenic not near genes chr3L 6908070 intergenic not near genes chr3L 6908145 intergenic not near genes chr3L_6_6905001 chr3L_6905001 RAL-385 578 chr3L 6934323 6934347 chr3L 6934454 6934468 5 127 4.5 1.0 2.8 1.3 145 chr3L 6934323 exon CG14820 + chr3L 6934396 intron CG14820 + chr3L 6934468 intron CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-385 579 chr3L 6994876 6994915 chr3L 6995497 6995546 BS 5 628 0.5 1.0 0.8 2.8 670 chr3L 6994876 intergenic bin + chr3L 6995211 intergenic not near genes chr3L 6995546 intergenic not near genes chr3L_5_6995001 chr3L_6995001 RAL-385 580 chr3L 7033174 7033189 chr3L 7033254 7033278 4 92 3.0 1.0 2.0 1.3 104 chr3L 7033174 intron Mp + chr3L 7033226 intron Mp + chr3L 7033278 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-385 581 chr3L 7276156 7276174 chr3L 7276258 7276276 9 102 1.0 9.5 5.2 1.5 120 chr3L 7276156 intron unc-13-4A - chr3L 7276216 intron unc-13-4A - chr3L 7276276 intron unc-13-4A - chr3L_9_7275001 chr3L_7275001 RAL-385 582 chr3L 7377296 7377349 chr3L 7380421 7380439 297 8 3119 3.0 1.5 2.2 2.5 3143 chr3L 7377296 intron SMSr - chr3L 7378868 intron SMSr - chr3L 7380439 intron SMSr - chr3L_8_7375001 chr3L_7375001 RAL-385 583 chr3L 7460366 7460394 chr3L 7460470 7460498 7 104 1.0 1.0 1.0 3.5 132 chr3L 7460366 intergenic not near genes chr3L 7460432 intergenic not near genes chr3L 7460498 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-385 584 chr3L 7508669 7508698 chr3L 7508773 7508791 5 100 2.5 1.0 1.8 1.8 122 chr3L 7508669 intergenic not near genes chr3L 7508730 intergenic not near genes chr3L 7508791 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-385 585 chr3L 7793696 7793744 chr3L 7800768 7800800 297 9 7064 3.0 1.5 2.2 2.8 7104 chr3L 7793696 intron CG32369 - chr3L 7797248 intron CG32369 - chr3L 7800800 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-385 586 chr3L 7916817 7916847 chr3L 7926003 7926038 roo 8 9189 4.0 4.5 4.2 1.5 9221 chr3L 7916817 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926038 3` UTR syd - chr3L_8_7920001 chr3L_7920001 RAL-385 587 chr3L 7985354 7985370 chr3L 7987697 7987718 NOF 4 2346 3.0 2.5 2.8 1.1 2364 chr3L 7985354 intron nmo + chr3L 7986536 intron nmo + chr3L 7987718 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-385 588 chr3L 7985384 7985398 chr3L 7987692 7987696 NOF 5 2324 1.5 2.0 1.8 1.8 2312 chr3L 7985384 intron nmo + chr3L 7986540 intron nmo + chr3L 7987696 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-385 589 chr3L 8102606 8102644 chr3L 8102763 8102806 5 157 1.5 1.0 1.2 2.3 200 chr3L 8102606 intron Ect4 + chr3L 8102706 intron Ect4 + chr3L 8102806 intron Ect4 + chr3L_5_8100001 chr3L_8100001 RAL-385 590 chr3L 8210788 8210823 chr3L 8210923 8210958 6 132 3.0 3.0 3.0 1.5 170 chr3L 8210788 intergenic CG32364 - chr3L 8210873 intergenic CG32364 - chr3L 8210958 intergenic CG32364 - chr3L_6_8210001 chr3L_8210001 RAL-385 591 chr3L 8226695 8226748 chr3L 8226814 8226821 6 111 1.0 0.0 0.5 4.0 126 chr3L 8226695 intergenic not near genes chr3L 8226758 intergenic not near genes chr3L 8226821 intergenic not near genes chr3L_6_8225001 chr3L_8225001 RAL-385 592 chr3L 8546023 8546056 chr3L 8546118 8546149 9 101 4.0 2.0 3.0 2.2 126 chr3L 8546023 intron rhea + chr3L 8546086 intron rhea + chr3L 8546149 intron rhea + chr3L_9_8545001 chr3L_8545001 RAL-385 593 chr3L 8782113 8782153 chr3L 8782259 8782299 10 143 1.0 3.0 2.0 3.3 186 chr3L 8782113 intron Fhos + chr3L 8782206 intron Fhos + chr3L 8782299 intron Fhos + chr3L_10_8780001 chr3L_8780001 RAL-385 594 chr3L 8791280 8791309 chr3L 8796704 8796748 I-element 7 5434 0.5 0.5 0.5 4.7 5468 chr3L 8791280 exon Fhos + chr3L 8794014 intron Fhos + chr3L 8796748 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-385 595 chr3L 9030412 9030442 chr3L 9030511 9030541 4 99 3.0 0.5 1.8 1.4 129 chr3L 9030412 intergenic not near genes chr3L 9030476 intergenic not near genes chr3L 9030541 intergenic not near genes chr3L_4_9030001 chr3L_9030001 RAL-385 596 chr3L 9047071 9047096 chr3L 9047178 9047186 5 104 0.5 0.0 0.2 4.2 115 chr3L 9047071 intergenic CG5144 + chr3L 9047128 intergenic CG5144 + chr3L 9047186 intergenic CG5144 + chr3L_5_9045001 chr3L_9045001 RAL-385 597 chr3L 9076914 9076950 chr3L 9084494 9084510 412 4 7571 3.5 1.0 2.2 1.2 7596 chr3L 9076914 exon Tequila + chr3L 9080712 intron Tequila + chr3L 9084510 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-385 598 chr3L 9164703 9164713 chr3L 9166190 9166199 hobo 5 1487 1.5 0.0 0.8 2.8 1496 chr3L 9164703 intron Rdl - chr3L 9165451 intron Rdl - chr3L 9166199 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-385 599 chr3L 9219259 9219269 chr3L 9219916 9219920 jockey 4 657 2.5 3.0 2.8 1.1 661 chr3L 9219259 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219920 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-385 600 chr3L 9443510 9443531 chr3L 9445315 9445338 S-element 5 1805 4.0 6.0 5.0 0.8 1828 chr3L 9443510 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445338 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-385 601 chr3L 9637839 9637886 chr3L 9637941 9637988 14 100 2.5 1.5 2.0 4.7 149 chr3L 9637839 intron fry - chr3L 9637914 intron fry - chr3L 9637988 intron fry - chr3L_14_9635001 chr3L_9635001 RAL-385 602 chr3L 9639042 9639059 chr3L 9639147 9639164 4 105 0.0 6.5 3.2 1.0 122 chr3L 9639042 intron fry - chr3L 9639103 intron fry - chr3L 9639164 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-385 603 chr3L 9715593 9715630 chr3L 9715683 9715707 5 91 1.5 3.5 2.5 1.4 114 chr3L 9715593 intron vsg + chr3L 9715650 intron vsg + chr3L 9715707 intron vsg + chr3L_5_9715001 chr3L_9715001 RAL-385 604 chr3L 10003158 10003173 chr3L 10003265 10003290 4 114 5.0 2.5 3.8 0.8 132 chr3L 10003158 intron dpr6 + chr3L 10003224 intron dpr6 + chr3L 10003290 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-385 605 chr3L 10007173 10007202 chr3L 10007296 10007325 5 123 1.0 4.0 2.5 1.4 152 chr3L 10007173 intron dpr6 + chr3L 10007249 intron dpr6 + chr3L 10007325 intron dpr6 + chr3L_5_10005001 chr3L_10005001 RAL-385 606 chr3L 10191288 10191313 chr3L 10191408 10191443 4 127 0.5 4.0 2.2 1.2 155 chr3L 10191288 intron ect - chr3L 10191366 intron ect - chr3L 10191443 intron ect - chr3L_4_10190001 chr3L_10190001 RAL-385 607 chr3L 10297099 10297147 chr3L 10297226 10297274 11 119 3.0 2.0 2.5 3.1 175 chr3L 10297099 intergenic not near genes chr3L 10297186 intergenic not near genes chr3L 10297274 intergenic not near genes chr3L_11_10295001 chr3L_10295001 RAL-385 608 chr3L 10348641 10348665 chr3L 10348778 10348781 5 132 2.5 0.0 1.2 2.3 140 chr3L 10348641 intron CR44327 + chr3L 10348711 intron CR44327 + chr3L 10348781 intron CR44327 + chr3L_5_10345001 chr3L_10345001 RAL-385 609 chr3L 10551461 10551477 chr3L 10551568 10551572 4 104 0.0 2.5 1.2 1.8 111 chr3L 10551461 intron A2bp1 + chr3L 10551516 intron A2bp1 + chr3L 10551572 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-385 610 chr3L 10584261 10584300 chr3L 10584366 10584407 16 106 8.5 5.0 6.8 2.1 146 chr3L 10584261 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584407 intron A2bp1 + chr3L_16_10580001 chr3L_10580001 RAL-385 611 chr3L 10621834 10621848 chr3L 10621940 10621955 4 106 3.5 2.0 2.8 1.1 121 chr3L 10621834 intergenic not near genes chr3L 10621894 intergenic not near genes chr3L 10621955 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-385 612 chr3L 10658086 10658189 chr3L 10658177 10658336 6 138 0.5 0.5 0.5 4.0 250 chr3L 10658086 intron CG32066 - chr3L 10658211 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-385 613 chr3L 10694906 10694915 chr3L 10695018 10695027 4 112 2.0 3.5 2.8 1.1 121 chr3L 10694906 intron NijA - chr3L 10694966 intron NijA - chr3L 10695027 exon NijA - chr3L_4_10690001 chr3L_10690001 RAL-385 614 chr3L 10721990 10722017 chr3L 10722077 10722088 4 89 0.5 0.0 0.2 3.3 98 chr3L 10721990 intergenic not near genes chr3L 10722039 intergenic not near genes chr3L 10722088 intergenic not near genes chr3L_4_10720001 chr3L_10720001 RAL-385 615 chr3L 10745524 10745566 chr3L 10745624 10745666 10 98 1.5 2.0 1.8 3.6 142 chr3L 10745524 intergenic not near genes chr3L 10745595 intergenic not near genes chr3L 10745666 intergenic not near genes chr3L_10_10745001 chr3L_10745001 RAL-385 616 chr3L 10887362 10887374 chr3L 10887461 10887462 4 96 0.0 7.5 3.8 0.8 100 chr3L 10887362 intergenic not near genes chr3L 10887412 intergenic not near genes chr3L 10887462 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-385 617 chr3L 11105279 11105308 chr3L 11107010 11107034 X-element 11 1728 4.5 1.5 3.0 2.8 1755 chr3L 11105279 intergenic not near genes chr3L 11106156 intergenic not near genes chr3L 11107034 exon CG32073 - chr3L_11_11105001 chr3L_11105001 RAL-385 618 chr3L 11135520 11135796 chr3L 11135770 11135901 5 190 0.0 0.0 0.0 5.0 381 chr3L 11135520 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135901 intergenic CG32082 +,CG14143 + chr3L_5_11135001 chr3L_11135001 RAL-385 619 chr3L 11158360 11158547 chr3L 11158512 11158639 11 126 12.0 15.5 13.8 0.7 279 chr3L 11158360 exon CG32082 + chr3L 11158500 intron CG32082 + chr3L 11158639 exon CG32082 + chr3L_11_11155001 chr3L_11155001 RAL-385 620 chr3L 11224528 11224558 chr3L 11224670 11224685 7 137 4.5 2.0 3.2 1.7 157 chr3L 11224528 intron CG42671 + chr3L 11224606 intron CG42671 + chr3L 11224685 intron CG42671 + chr3L_7_11220001 chr3L_11220001 RAL-385 621 chr3L 11249842 11249891 chr3L 11249945 11249988 12 99 4.5 1.5 3.0 3.0 146 chr3L 11249842 5` UTR CR44717 + chr3L 11249915 5` UTR CR44717 + chr3L 11249988 5` UTR CR44717 + chr3L_12_11245001 chr3L_11245001 RAL-385 622 chr3L 11264445 11264477 chr3L 11271417 11271429 17.6 4 6967 2.0 1.5 1.8 1.4 6984 chr3L 11264445 intergenic not near genes chr3L 11267937 intergenic not near genes chr3L 11271429 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-385 623 chr3L 11276663 11276692 chr3L 11276763 11276792 5 100 0.0 6.5 3.2 1.2 129 chr3L 11276663 intergenic not near genes chr3L 11276728 intergenic not near genes chr3L 11276792 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-385 624 chr3L 11435560 11435583 chr3L 11435749 11435772 5 189 0.5 0.0 0.2 4.2 212 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435666 5` UTR CR44548 + chr3L 11435772 5` UTR CR44548 + chr3L_5_11435001 chr3L_11435001 RAL-385 625 chr3L 11475606 11475638 chr3L 11475717 11475730 4 98 1.5 1.0 1.2 1.8 124 chr3L 11475606 intergenic Vha16-2 + chr3L 11475668 intergenic Vha16-2 + chr3L 11475730 intergenic Vha16-2 + chr3L_4_11475001 chr3L_11475001 RAL-385 626 chr3L 11588743 11588755 chr3L 11588890 11588896 9 161 2.0 2.0 2.0 3.0 153 chr3L 11588743 intergenic not near genes chr3L 11588820 intergenic not near genes chr3L 11588896 intergenic not near genes chr3L_9_11585001 chr3L_11585001 RAL-385 627 chr3L 11678087 11678116 chr3L 11678194 11678223 5 104 4.0 4.5 4.2 1.0 136 chr3L 11678087 intron CG32085 - chr3L 11678155 intron CG32085 - chr3L 11678223 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-385 628 chr3L 11723075 11723110 chr3L 11727890 11727924 Doc 11 4813 1.0 5.5 3.2 2.6 4849 chr3L 11723075 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727924 3` UTR Bmcp + chr3L_11_11725001 chr3L_11725001 RAL-385 629 chr3L 7749470 7749471 chr3L 11777678 11777678 11 4028207 10.0 11.0 10.5 1.0 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_11_9760001 chr3L_9760001 RAL-385 630 chr3L 11777678 11777678 chr3L 12163305 12163305 6 385627 12.5 6.5 9.5 0.6 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_6_11970001 chr3L_11970001 RAL-385 631 chr3L 11847147 11847170 chr3L 11847257 11847280 4 110 1.0 0.0 0.5 2.7 133 chr3L 11847147 intergenic CG12521 - chr3L 11847214 intergenic CG12521 - chr3L 11847280 intergenic CG12521 - chr3L_4_11845001 chr3L_11845001 RAL-385 632 chr3L 11902089 11902111 chr3L 11902391 11902414 7 303 22.5 25.0 23.8 0.3 325 chr3L 11902089 intron CG44837 - chr3L 11902252 intron CG44837 - chr3L 11902414 intron CG44837 - chr3L_7_11900001 chr3L_11900001 RAL-385 633 chr3L 11943490 11943511 chr3L 11943610 11943632 10 119 2.0 7.5 4.8 1.7 142 chr3L 11943490 intergenic Rpt4R +,CG5883 - chr3L 11943561 intergenic Rpt4R +,CG5883 - chr3L 11943632 intergenic CG5883 -,Rpt4R + chr3L_10_11940001 chr3L_11940001 RAL-385 634 chr3L 12013901 12013937 chr3L 12014004 12014048 6 110 1.0 0.0 0.5 4.0 147 chr3L 12013901 intron rols - chr3L 12013974 intron rols - chr3L 12014048 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-385 635 chr3L 12052693 12052717 chr3L 12052802 12052826 4 109 2.5 0.5 1.5 1.6 133 chr3L 12052693 intron rols - chr3L 12052760 intron rols - chr3L 12052826 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-385 636 chr3L 12197383 12197413 chr3L 12197485 12197514 5 102 1.0 1.0 1.0 2.5 131 chr3L 12197383 intergenic CG11529 + chr3L 12197448 intergenic CG11529 + chr3L 12197514 intergenic CG11529 + chr3L_5_12195001 chr3L_12195001 RAL-385 637 chr3L 12369523 12369567 chr3L 12369633 12369677 8 104 2.0 1.5 1.8 2.9 154 chr3L 12369523 intron Ncc69 - chr3L 12369600 intron Ncc69 - chr3L 12369677 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-385 638 chr3L 12610974 12611024 chr3L 12611240 12611290 6 262 3.0 3.0 3.0 1.5 316 chr3L 12610974 intron caup + chr3L 12611132 intron caup + chr3L 12611290 intron caup + chr3L_6_12610001 chr3L_12610001 RAL-385 639 chr3L 12626132 12626168 chr3L 12626261 12626297 8 126 1.0 1.0 1.0 4.0 165 chr3L 12626132 intergenic not near genes chr3L 12626214 intergenic not near genes chr3L 12626297 intergenic not near genes chr3L_8_12625001 chr3L_12625001 RAL-385 640 chr3L 12647930 12647962 chr3L 12648026 12648047 9 95 1.0 4.0 2.5 2.6 117 chr3L 12647930 5` UTR CR32111 + chr3L 12647988 5` UTR CR32111 + chr3L 12648047 5` UTR CR32111 + chr3L_9_12645001 chr3L_12645001 RAL-385 641 chr3L 12668045 12668101 chr3L 12668151 12668165 9 100 2.5 0.0 1.2 4.1 120 chr3L 12668045 intergenic not near genes chr3L 12668105 intergenic not near genes chr3L 12668165 intergenic not near genes chr3L_9_12665001 chr3L_12665001 RAL-385 642 chr3L 12706622 12706654 chr3L 12706769 12706801 9 147 3.5 1.0 2.2 2.8 179 chr3L 12706622 intron mirr + chr3L 12706712 intron mirr + chr3L 12706801 intron mirr + chr3L_9_12705001 chr3L_12705001 RAL-385 643 chr3L 12857975 12858004 chr3L 12858089 12858118 9 113 2.0 2.5 2.2 2.8 143 chr3L 12857975 3` UTR CG32107 - chr3L 12858046 3` UTR CG32107 - chr3L 12858118 3` UTR CG32107 - chr3L_9_12855001 chr3L_12855001 RAL-385 644 chr3L 12872240 12872262 chr3L 12872336 12872366 4 98 2.5 3.0 2.8 1.1 126 chr3L 12872240 intergenic not near genes chr3L 12872303 intergenic not near genes chr3L 12872366 intergenic not near genes chr3L_4_12870001 chr3L_12870001 RAL-385 645 chr3L 12874903 12874952 chr3L 12877215 12877264 jockey 4 2312 1.5 2.0 1.8 1.4 2361 chr3L 12874903 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877264 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-385 646 chr3L 12957810 12957818 chr3L 12962267 12962318 copia 4 4474 1.0 1.5 1.2 1.8 4508 chr3L 12957810 intergenic not near genes chr3L 12960064 intergenic not near genes chr3L 12962318 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-385 647 chr3L 12978301 12978348 chr3L 12978418 12978449 7 113 0.0 1.5 0.8 3.9 148 chr3L 12978301 intergenic not near genes chr3L 12978375 intergenic not near genes chr3L 12978449 intergenic not near genes chr3L_7_12975001 chr3L_12975001 RAL-385 648 chr3L 13085056 13085083 chr3L 13085154 13085182 4 99 2.5 2.5 2.5 1.1 126 chr3L 13085056 intergenic not near genes chr3L 13085119 intergenic not near genes chr3L 13085182 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-385 649 chr3L 13477011 13477036 chr3L 13477103 13477133 6 96 0.0 2.0 1.0 3.0 122 chr3L 13477011 intergenic not near genes chr3L 13477072 intergenic stv + chr3L 13477133 intergenic stv + chr3L_6_13475001 chr3L_13475001 RAL-385 650 chr3L 13677519 13677562 chr3L 13677614 13677659 7 93 3.5 3.0 3.2 1.7 140 chr3L 13677519 intron bru-3 - chr3L 13677589 intron bru-3 - chr3L 13677659 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-385 651 chr3L 13767898 13767934 chr3L 13767996 13768000 9 93 0.0 0.5 0.2 7.5 102 chr3L 13767898 intron bru-3 - chr3L 13767949 intron bru-3 - chr3L 13768000 intron bru-3 - chr3L_9_13765001 chr3L_13765001 RAL-385 652 chr3L 14107245 14107262 chr3L 14107342 14107358 4 96 5.0 0.5 2.8 1.1 113 chr3L 14107245 intron Sox21a - chr3L 14107302 intron Sox21a - chr3L 14107358 intron Sox21a - chr3L_4_14105001 chr3L_14105001 RAL-385 653 chr3L 14175346 14175368 chr3L 14175507 14175515 7 164 3.5 2.0 2.8 1.8 169 chr3L 14175346 intergenic D - chr3L 14175430 intergenic D - chr3L 14175515 intergenic D - chr3L_7_14175001 chr3L_14175001 RAL-385 654 chr3L 14338291 14338323 chr3L 14338405 14338439 4 112 1.5 3.5 2.5 1.1 148 chr3L 14338291 intron fz + chr3L 14338365 intron fz + chr3L 14338439 intron fz + chr3L_4_14335001 chr3L_14335001 RAL-385 655 chr3L 14468434 14468475 chr3L 14473656 14473701 copia 6 5225 0.5 0.5 0.5 4.0 5267 chr3L 14468434 intron bbg - chr3L 14471068 intron bbg - chr3L 14473701 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-385 656 chr3L 14522097 14522124 chr3L 14522212 14522240 4 116 2.0 0.0 1.0 2.0 143 chr3L 14522097 intron bbg - chr3L 14522168 intron bbg - chr3L 14522240 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-385 657 chr3L 14522824 14522852 chr3L 14522906 14522943 5 92 1.0 1.0 1.0 2.5 119 chr3L 14522824 intron bbg - chr3L 14522884 intron bbg - chr3L 14522943 intron bbg - chr3L_5_14520001 chr3L_14520001 RAL-385 658 chr3L 14546803 14546813 chr3L 14546924 14546934 4 121 0.0 1.0 0.5 2.7 131 chr3L 14546803 intron CG9238 - chr3L 14546868 intron CG9238 - chr3L 14546934 intron CG9238 - chr3L_4_14545001 chr3L_14545001 RAL-385 659 chr3L 14724811 14724835 chr3L 14724915 14724939 5 104 0.5 3.0 1.8 1.8 128 chr3L 14724811 intron ome + chr3L 14724875 intron ome + chr3L 14724939 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-385 660 chr3L 14959971 14960010 chr3L 14960075 14960114 9 104 1.0 1.5 1.2 4.1 143 chr3L 14959971 intergenic not near genes chr3L 14960042 intergenic not near genes chr3L 14960114 intergenic not near genes chr3L_9_14960001 chr3L_14960001 RAL-385 661 chr3L 14970746 14970760 chr3L 14971076 14971090 F-element 4 330 4.5 5.0 4.8 0.7 344 chr3L 14970746 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971090 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-385 662 chr3L 15151201 15151241 chr3L 15151405 15151440 7 201 2.0 1.5 1.8 2.5 239 chr3L 15151201 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151440 intron FucTA + chr3L_7_15150001 chr3L_15150001 RAL-385 663 chr3L 15177338 15177362 chr3L 15177438 15177447 4 98 1.0 1.0 1.0 2.0 109 chr3L 15177338 intergenic not near genes chr3L 15177392 intergenic not near genes chr3L 15177447 intergenic not near genes chr3L_4_15175001 chr3L_15175001 RAL-385 664 chr3L 15209050 15209095 chr3L 15209156 15209201 9 101 0.0 3.5 1.8 3.2 151 chr3L 15209050 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209201 intergenic not near genes chr3L_9_15205001 chr3L_15205001 RAL-385 665 chr3L 15219723 15219773 chr3L 15219825 15219874 5 101 0.0 1.0 0.5 3.3 151 chr3L 15219723 intergenic not near genes chr3L 15219798 intergenic not near genes chr3L 15219874 intergenic not near genes chr3L_5_15215001 chr3L_15215001 RAL-385 666 chr3L 15295767 15295796 chr3L 15298620 15298659 gypsy5 5 2857 1.5 5.0 3.2 1.2 2892 chr3L 15295767 intergenic not near genes chr3L 15297213 intergenic not near genes chr3L 15298659 intergenic Best4 + chr3L_5_15295001 chr3L_15295001 RAL-385 667 chr3L 15423745 15423784 chr3L 15426608 15426648 opus 4 2862 2.5 4.0 3.2 1.0 2903 chr3L 15423745 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426648 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-385 668 chr3L 15482304 15482349 chr3L 15482416 15482471 5 112 1.0 1.5 1.2 2.3 167 chr3L 15482304 intergenic not near genes chr3L 15482388 intergenic not near genes chr3L 15482471 intergenic not near genes chr3L_5_15480001 chr3L_15480001 RAL-385 669 chr3L 15541597 15541646 chr3L 15541708 15541726 8 106 1.5 2.5 2.0 2.7 129 chr3L 15541597 intron CrebA + chr3L 15541662 intron CrebA + chr3L 15541726 intron CrebA + chr3L_8_15540001 chr3L_15540001 RAL-385 670 chr3L 15554900 15554943 chr3L 15556707 15556747 S-element 6 1806 4.0 2.0 3.0 1.5 1847 chr3L 15554900 intron AGO2 + chr3L 15555824 intron AGO2 + chr3L 15556747 intron AGO2 + chr3L_6_15555001 chr3L_15555001 RAL-385 671 chr3L 15811528 15811581 chr3L 15811633 15811636 13 101 0.5 1.5 1.0 6.5 108 chr3L 15811528 intron fwe - chr3L 15811582 intron fwe - chr3L 15811636 intron fwe - chr3L_13_15810001 chr3L_15810001 RAL-385 672 chr3L 15827706 15827761 chr3L 15831974 15832025 8 4271 26.5 25.0 25.8 0.3 4319 chr3L 15827706 intron dbo + chr3L 15829866 exon dbo + chr3L 15832025 intergenic dbo +,CG12713 + chr3L_8_15825001 chr3L_15825001 RAL-385 673 chr3L 15929190 15929224 chr3L 15938347 15938391 roo 8 9157 1.0 2.5 1.8 2.9 9201 chr3L 15929190 intron Pka-C3 - chr3L 15933790 intron Pka-C3 - chr3L 15938391 intron Pka-C3 - chr3L_8_15930001 chr3L_15930001 RAL-385 674 chr3L 16117347 16117376 chr3L 16121668 16121705 6 4323 10.5 23.5 17.0 0.3 4358 chr3L 16117347 intron Taf4 + chr3L 16119526 exon Taf4 + chr3L 16121705 intergenic Taf4 +,CG12272 + chr3L_6_16115001 chr3L_16115001 RAL-385 675 chr3L 16184089 16184136 chr3L 16188928 16188949 X-element 12 4830 2.0 0.0 1.0 6.0 4860 chr3L 16184089 intergenic not near genes chr3L 16186519 intergenic not near genes chr3L 16188949 intergenic not near genes chr3L_12_16185001 chr3L_16185001 RAL-385 676 chr3L 16212789 16212844 chr3L 16212900 16212929 18 106 6.5 0.5 3.5 4.0 140 chr3L 16212789 intergenic CG13073 - chr3L 16212859 intergenic CG13073 - chr3L 16212929 intergenic CG13073 - chr3L_18_16210001 chr3L_16210001 RAL-385 677 chr3L 16457531 16457555 chr3L 16457625 16457625 6 101 1.0 1.5 1.2 2.7 94 chr3L 16457531 intron CG33158 + chr3L 16457578 intron CG33158 + chr3L 16457625 intron CG33158 + chr3L_6_16455001 chr3L_16455001 RAL-385 678 chr3L 16493960 16494012 chr3L 16494493 16494524 jockey 11 529 3.5 3.0 3.2 2.6 564 chr3L 16493960 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494242 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494524 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-385 679 chr3L 16533545 16533586 chr3L 16533676 16533717 4 130 4.0 3.0 3.5 0.9 172 chr3L 16533545 intron CG43373 - chr3L 16533631 intron CG43373 - chr3L 16533717 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-385 680 chr3L 16540048 16540077 chr3L 16540156 16540164 5 104 3.0 2.5 2.8 1.3 116 chr3L 16540048 intron CG43373 - chr3L 16540106 intron CG43373 - chr3L 16540164 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-385 681 chr3L 16616490 16616539 chr3L 16621838 16621887 297 4 5348 2.5 1.0 1.8 1.4 5397 chr3L 16616490 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621887 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-385 682 chr3L 16757629 16757669 chr3L 16757739 16757779 4 110 5.0 3.0 4.0 0.8 150 chr3L 16757629 intergenic not near genes chr3L 16757704 intergenic not near genes chr3L 16757779 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-385 683 chr3L 16818729 16818778 chr3L 16818825 16818874 12 94 4.0 2.0 3.0 3.0 145 chr3L 16818729 intron,intron nudC +,CG13024 - chr3L 16818802 intron,intron nudC +,CG13024 - chr3L 16818874 intron,intron nudC +,CG13024 - chr3L_12_16815001 chr3L_16815001 RAL-385 684 chr3L 17027146 17027182 chr3L 17027258 17027294 6 109 1.5 3.5 2.5 1.7 148 chr3L 17027146 intergenic Fit2 +,CG7730 + chr3L 17027220 intergenic Fit2 +,CG7730 + chr3L 17027294 intergenic Fit2 +,CG7730 + chr3L_6_17025001 chr3L_17025001 RAL-385 685 chr3L 17034915 17034962 chr3L 17035123 17035170 G2 11 207 0.5 1.5 1.0 5.5 255 chr3L 17034915 intergenic not near genes chr3L 17035042 intergenic not near genes chr3L 17035170 intergenic beg + chr3L_11_17035001 chr3L_17035001 RAL-385 686 chr3L 17084983 17085033 chr3L 17094151 17094201 roo 16 9168 4.0 1.5 2.8 4.2 9218 chr3L 17084983 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094201 intron Rbp6 - chr3L_16_17085001 chr3L_17085001 RAL-385 687 chr3L 17149143 17149165 chr3L 17149244 17149265 9 100 5.0 0.0 2.5 2.6 122 chr3L 17149143 intron Rbp6 - chr3L 17149204 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-385 688 chr3L 17331056 17331064 chr3L 17331166 17331174 4 110 2.5 1.5 2.0 1.3 118 chr3L 17331056 intergenic not near genes chr3L 17331115 intergenic not near genes chr3L 17331174 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-385 689 chr3L 17344629 17344652 chr3L 17344716 17344755 5 98 2.0 1.5 1.8 1.8 126 chr3L 17344629 exon brv2 - chr3L 17344692 5` UTR brv2 - chr3L 17344755 intergenic brv2 -,Mip - chr3L_5_17340001 chr3L_17340001 RAL-385 690 chr3L 17386820 17386829 chr3L 17386880 17386903 4 74 0.5 0.0 0.2 3.3 83 chr3L 17386820 intron CG13731 - chr3L 17386862 intron CG13731 - chr3L 17386903 intron CG13731 - chr3L_4_17385001 chr3L_17385001 RAL-385 691 chr3L 17510728 17510764 chr3L 17510832 17510868 5 96 2.0 4.0 3.0 1.2 140 chr3L 17510728 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510868 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-385 692 chr3L 17592769 17592818 chr3L 17592879 17592929 13 110 1.5 5.0 3.2 3.1 160 chr3L 17592769 intron Eip74EF - chr3L 17592849 intron Eip74EF - chr3L 17592929 intron Eip74EF - chr3L_13_17590001 chr3L_17590001 RAL-385 693 chr3L 17730837 17730863 chr3L 17738182 17738213 mdg1 13 7348 7.0 1.0 4.0 2.6 7376 chr3L 17730837 intron Ccn + chr3L 17734525 intron Ccn + chr3L 17738213 intron Ccn + chr3L_13_17730001 chr3L_17730001 RAL-385 694 chr3L 17787663 17787701 chr3L 17787776 17787779 6 104 1.5 1.5 1.5 2.4 116 chr3L 17787663 intergenic not near genes chr3L 17787721 intergenic not near genes chr3L 17787779 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-385 695 chr3L 17789823 17789876 chr3L 17789919 17789970 11 93 2.0 3.0 2.5 3.1 147 chr3L 17789823 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789970 intergenic not near genes chr3L_11_17785001 chr3L_17785001 RAL-385 696 chr3L 17799796 17799821 chr3L 17801603 17801628 S-element 9 1806 8.0 3.5 5.8 1.3 1832 chr3L 17799796 intron NUCB1 - chr3L 17800712 intron NUCB1 - chr3L 17801628 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-385 697 chr3L 17834310 17834351 chr3L 17834494 17834535 4 182 1.0 3.5 2.2 1.2 225 chr3L 17834310 intron Grd + chr3L 17834422 intron Grd + chr3L 17834535 intron Grd + chr3L_4_17830001 chr3L_17830001 RAL-385 698 chr3L 17837607 17837644 chr3L 17837715 17837726 4 99 1.0 1.0 1.0 2.0 119 chr3L 17837607 exon Grd + chr3L 17837666 intron Grd + chr3L 17837726 intron Grd + chr3L_4_17835001 chr3L_17835001 RAL-385 699 chr3L 17918368 17918398 chr3L 17921189 17921200 opus 4 2815 1.5 3.5 2.5 1.1 2832 chr3L 17918368 intergenic not near genes chr3L 17919784 intergenic not near genes chr3L 17921200 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-385 700 chr3L 18000656 18000707 chr3L 18000749 18000798 17 93 3.5 2.5 3.0 4.2 142 chr3L 18000656 intron Eip75B - chr3L 18000727 intron Eip75B - chr3L 18000798 intron Eip75B - chr3L_17_18000001 chr3L_18000001 RAL-385 701 chr3L 18047696 18047730 chr3L 18056773 18056805 roo 8 9074 3.0 4.0 3.5 1.8 9109 chr3L 18047696 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056805 intron Eip75B - chr3L_8_18050001 chr3L_18050001 RAL-385 702 chr3L 18064055 18064070 chr3L 18064160 18064176 4 104 1.0 3.0 2.0 1.3 121 chr3L 18064055 intron Eip75B - chr3L 18064116 intron Eip75B - chr3L 18064176 intron Eip75B - chr3L_4_18060001 chr3L_18060001 RAL-385 703 chr3L 18172673 18172685 chr3L 18172769 18172781 4 96 5.5 5.0 5.2 0.6 108 chr3L 18172673 intron W - chr3L 18172727 intron W - chr3L 18172781 intron W - chr3L_4_18170001 chr3L_18170001 RAL-385 704 chr3L 18198930 18198931 chr3L 24821492 24821494 12 6622563 0.0 6.5 3.2 2.9 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_12_21510001 chr3L_21510001 RAL-385 705 chr3L 18301330 18301380 chr3L 18301439 18301489 5 109 0.0 1.5 0.8 2.8 159 chr3L 18301330 intergenic CG13700 - chr3L 18301410 intergenic CG13700 - chr3L 18301489 intergenic CG13700 - chr3L_5_18300001 chr3L_18300001 RAL-385 706 chr3L 18406112 18406152 chr3L 18406208 18406248 6 96 1.0 2.5 1.8 2.1 136 chr3L 18406112 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406248 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-385 707 chr3L 18408712 18408760 chr3L 18408818 18408866 7 105 2.0 2.5 2.2 2.2 154 chr3L 18408712 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408866 intergenic not near genes chr3L_7_18405001 chr3L_18405001 RAL-385 708 chr3L 18528611 18528656 chr3L 18537792 18537836 roo 8 9180 3.0 3.5 3.2 1.9 9225 chr3L 18528611 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537836 intergenic not near genes chr3L_8_18530001 chr3L_18530001 RAL-385 709 chr3L 18593935 18593976 chr3L 18595935 18595962 Doc 8 1995 4.5 3.0 3.8 1.7 2027 chr3L 18593935 intergenic term - chr3L 18594948 intergenic not near genes chr3L 18595962 intergenic CR45389 + chr3L_8_18590001 chr3L_18590001 RAL-385 710 chr3L 18772388 18772437 chr3L 18781089 18781102 roo 5 8690 2.5 0.5 1.5 2.0 8714 chr3L 18772388 intron ftz-f1 - chr3L 18776745 intron ftz-f1 - chr3L 18781102 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-385 711 chr3L 18792565 18792601 chr3L 18792654 18792702 6 97 2.0 2.5 2.2 1.9 137 chr3L 18792565 intron ftz-f1 - chr3L 18792634 intron ftz-f1 - chr3L 18792702 intron ftz-f1 - chr3L_6_18790001 chr3L_18790001 RAL-385 712 chr3L 18797292 18797329 chr3L 18797396 18797428 5 101 4.5 2.0 3.2 1.2 136 chr3L 18797292 intron ftz-f1 - chr3L 18797360 intron ftz-f1 - chr3L 18797428 intron ftz-f1 - chr3L_5_18795001 chr3L_18795001 RAL-385 713 chr3L 18810125 18810148 chr3L 18810222 18810245 6 95 2.5 3.5 3.0 1.5 120 chr3L 18810125 intron CG14073 - chr3L 18810185 intron CG14073 - chr3L 18810245 intron CG14073 - chr3L_6_18810001 chr3L_18810001 RAL-385 714 chr3L 18836377 18836408 chr3L 18836471 18836511 7 102 0.5 2.0 1.2 3.2 134 chr3L 18836377 intron Indy - chr3L 18836444 intron Indy - chr3L 18836511 intron Indy - chr3L_7_18835001 chr3L_18835001 RAL-385 715 chr3L 18839716 18839762 chr3L 18839819 18839837 8 98 2.5 3.0 2.8 2.1 121 chr3L 18839716 intron Indy - chr3L 18839776 intron Indy - chr3L 18839837 intron Indy - chr3L_8_18835001 chr3L_18835001 RAL-385 716 chr3L 18868985 18868991 chr3L 18869058 18869091 4 91 3.5 5.5 4.5 0.7 106 chr3L 18868985 3` UTR Dysb + chr3L 18869038 3` UTR Dysb + chr3L 18869091 3` UTR Dysb + chr3L_4_18865001 chr3L_18865001 RAL-385 717 chr3L 18913769 18913824 chr3L 18913866 18913891 7 88 3.0 3.0 3.0 1.8 122 chr3L 18913769 intron CG14077 - chr3L 18913830 exon CG14077 - chr3L 18913891 exon CG14077 - chr3L_7_18910001 chr3L_18910001 RAL-385 718 chr3L 18924460 18924505 chr3L 18924556 18924600 5 96 2.0 5.5 3.8 1.0 140 chr3L 18924460 intron CG32204 - chr3L 18924530 intron CG32204 - chr3L 18924600 intron CG32204 - chr3L_5_18920001 chr3L_18920001 RAL-385 719 chr3L 19110613 19110640 chr3L 19110959 19110986 9 345 2.0 2.0 2.0 3.0 373 chr3L 19110613 intron CG14082 - chr3L 19110800 intron CG14082 - chr3L 19110986 intron CG14082 - chr3L_9_19110001 chr3L_19110001 RAL-385 720 chr3L 19262196 19262231 chr3L 19262298 19262333 8 101 5.5 8.5 7.0 1.0 137 chr3L 19262196 3` UTR Bet1 + chr3L 19262264 3` UTR,3` UTR Bet1 +,Max - chr3L 19262333 3` UTR,3` UTR Bet1 +,Max - chr3L_8_19260001 chr3L_19260001 RAL-385 721 chr3L 19342741 19342771 chr3L 19342852 19342881 8 111 5.5 1.5 3.5 1.8 140 chr3L 19342741 3` UTR CG32206 - chr3L 19342811 3` UTR CG32206 - chr3L 19342881 3` UTR CG32206 - chr3L_8_19340001 chr3L_19340001 RAL-385 722 chr3L 19404959 19404998 chr3L 19405051 19405085 8 91 3.5 5.0 4.2 1.5 126 chr3L 19404959 intron CG32206 - chr3L 19405022 intron CG32206 - chr3L 19405085 intron CG32206 - chr3L_8_19405001 chr3L_19405001 RAL-385 723 chr3L 19417788 19417834 chr3L 19417878 19417908 4 86 1.0 1.5 1.2 1.8 120 chr3L 19417788 intergenic not near genes chr3L 19417848 intergenic not near genes chr3L 19417908 intergenic not near genes chr3L_4_19415001 chr3L_19415001 RAL-385 724 chr3L 19439156 19439199 chr3L 19439255 19439296 5 99 2.0 2.0 2.0 1.7 140 chr3L 19439156 intergenic not near genes chr3L 19439226 intergenic not near genes chr3L 19439296 intergenic not near genes chr3L_5_19435001 chr3L_19435001 RAL-385 725 chr3L 19527906 19527958 chr3L 19528004 19528052 13 95 5.0 5.5 5.2 2.1 146 chr3L 19527906 intergenic not near genes chr3L 19527979 intergenic not near genes chr3L 19528052 intergenic not near genes chr3L_13_19525001 chr3L_19525001 RAL-385 726 chr3L 19544215 19544266 chr3L 19544311 19544362 13 91 2.5 4.0 3.2 3.1 147 chr3L 19544215 intergenic CG9279 -,l(3)76BDr - chr3L 19544288 intergenic l(3)76BDr -,CG9279 - chr3L 19544362 3` UTR l(3)76BDr - chr3L_13_19540001 chr3L_19540001 RAL-385 727 chr3L 19820279 19820313 chr3L 19827848 19827875 412 10 7567 2.5 2.0 2.2 3.1 7596 chr3L 19820279 intron Deaf1 + chr3L 19824077 intron Deaf1 + chr3L 19827875 intron Deaf1 + chr3L_10_19820001 chr3L_19820001 RAL-385 728 chr3L 19861818 19861853 chr3L 19863626 19863661 S-element 4 1804 1.5 2.0 1.8 1.4 1843 chr3L 19861818 5` UTR CR45433 + chr3L 19862740 intergenic not near genes chr3L 19863661 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-385 729 chr3L 19981195 19981233 chr3L 19981295 19981333 8 96 3.5 3.0 3.2 1.9 138 chr3L 19981195 intergenic CG17732 + chr3L 19981264 intergenic CG17732 + chr3L 19981333 intergenic CG17732 + chr3L_8_19980001 chr3L_19980001 RAL-385 730 chr3L 20113640 20113660 chr3L 20122917 20122937 roo 7 9275 8.0 5.0 6.5 0.9 9297 chr3L 20113640 intergenic not near genes chr3L 20118288 intergenic not near genes chr3L 20122937 intergenic not near genes chr3L_7_20115001 chr3L_20115001 RAL-385 731 chr3L 20113664 20113688 chr3L 20122912 20122965 roo 7 9270 3.5 4.5 4.0 1.4 9301 chr3L 20113664 intergenic not near genes chr3L 20118314 intergenic not near genes chr3L 20122965 intergenic not near genes chr3L_7_20115001 chr3L_20115001 RAL-385 732 chr3L 20187462 20187481 chr3L 20187541 20187580 4 92 15.5 15.5 15.5 0.2 118 chr3L 20187462 intron CG42674 - chr3L 20187521 intron CG42674 - chr3L 20187580 intron CG42674 - chr3L_4_20185001 chr3L_20185001 RAL-385 733 chr3L 20218210 20218228 chr3L 20218346 20218364 5 136 0.0 5.5 2.8 1.3 154 chr3L 20218210 intergenic CG6933 - chr3L 20218287 intergenic CG6933 - chr3L 20218364 intergenic CG6933 - chr3L_5_20215001 chr3L_20215001 RAL-385 734 chr3L 20386922 20386968 chr3L 20387044 20387090 7 121 2.0 2.0 2.0 2.3 168 chr3L 20386922 intron fbl + chr3L 20387006 intron fbl + chr3L 20387090 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-385 735 chr3L 20402180 20402227 chr3L 20402281 20402319 7 96 2.0 2.5 2.2 2.2 139 chr3L 20402180 intergenic not near genes chr3L 20402250 intergenic not near genes chr3L 20402319 intergenic not near genes chr3L_7_20400001 chr3L_20400001 RAL-385 736 chr3L 20403560 20403593 chr3L 20403675 20403680 9 108 3.0 2.0 2.5 2.6 120 chr3L 20403560 intergenic not near genes chr3L 20403620 intergenic not near genes chr3L 20403680 intergenic not near genes chr3L_9_20400001 chr3L_20400001 RAL-385 737 chr3L 20525228 20525228 chr3L 24821492 24821494 8 4296265 4.5 6.5 5.5 1.2 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_8_22670001 chr3L_22670001 RAL-385 738 chr3L 20525229 20525229 chr3L 22908066 22908067 6 2382838 4.5 27.0 15.8 0.4 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-385 739 chr3L 20525229 20525229 chr3L 24821492 24821494 9 4296264 4.5 6.5 5.5 1.4 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_9_22670001 chr3L_22670001 RAL-385 740 chr3L 20525230 20525230 chr3L 24821492 24821494 9 4296263 4.5 6.5 5.5 1.4 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_9_22670001 chr3L_22670001 RAL-385 741 chr3L 20849251 20849298 chr3L 20849349 20849393 10 96 2.5 5.5 4.0 2.0 142 chr3L 20849251 intron CG32432 - chr3L 20849322 intron CG32432 - chr3L 20849393 intron CG32432 - chr3L_10_20845001 chr3L_20845001 RAL-385 742 chr3L 20858058 20858099 chr3L 20858172 20858198 11 116 4.5 2.0 3.2 2.6 140 chr3L 20858058 intron CG32432 - chr3L 20858128 intron CG32432 - chr3L 20858198 intron CG32432 - chr3L_11_20855001 chr3L_20855001 RAL-385 743 chr3L 21010632 21010675 chr3L 21010733 21010771 6 94 2.5 3.0 2.8 1.6 139 chr3L 21010632 intron skd - chr3L 21010702 intron skd - chr3L 21010771 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-385 744 chr3L 21057131 21057156 chr3L 21057358 21057371 7 230 2.5 2.0 2.2 2.2 240 chr3L 21057131 intron siz + chr3L 21057251 intron siz + chr3L 21057371 intron siz + chr3L_7_21055001 chr3L_21055001 RAL-385 745 chr3L 21082205 21082237 chr3L 21082295 21082330 5 89 2.5 3.0 2.8 1.3 125 chr3L 21082205 intron ko - chr3L 21082268 intron ko - chr3L 21082330 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-385 746 chr3L 21085563 21085614 chr3L 21085970 21086022 9 405 2.5 1.5 2.0 3.0 459 chr3L 21085563 intron ko - chr3L 21085792 intron ko - chr3L 21086022 intron ko - chr3L_9_21085001 chr3L_21085001 RAL-385 747 chr3L 21151851 21151897 chr3L 21156955 21157001 flea 9 5103 3.0 2.5 2.8 2.4 5150 chr3L 21151851 intron Ac78C - chr3L 21154426 intron Ac78C - chr3L 21157001 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-385 748 chr3L 21266318 21266356 chr3L 21266415 21266456 5 97 2.0 4.0 3.0 1.2 138 chr3L 21266318 3` UTR Eip78C + chr3L 21266387 3` UTR Eip78C + chr3L 21266456 3` UTR Eip78C + chr3L_5_21265001 chr3L_21265001 RAL-385 749 chr3L 21294825 21294869 chr3L 21294931 21294979 9 110 4.0 3.5 3.8 1.9 154 chr3L 21294825 5` UTR Cpr78Cb + chr3L 21294902 5` UTR Cpr78Cb + chr3L 21294979 5` UTR Cpr78Cb + chr3L_9_21290001 chr3L_21290001 RAL-385 750 chr3L 21303693 21303737 chr3L 21303800 21303840 10 105 2.0 3.5 2.8 2.6 147 chr3L 21303693 intron CG11309 - chr3L 21303766 intron CG11309 - chr3L 21303840 intron CG11309 - chr3L_10_21300001 chr3L_21300001 RAL-385 751 chr3L 21306138 21306141 chr3L 21315317 21315320 roo 4 9179 6.5 2.0 4.2 0.8 9182 chr3L 21306138 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310729 intron Pc - chr3L 21315320 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-385 752 chr3L 21306142 21306175 chr3L 21315315 21315354 roo 8 9178 2.5 2.0 2.2 2.5 9212 chr3L 21306142 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310748 intron Pc - chr3L 21315354 3` UTR Pc - chr3L_8_21310001 chr3L_21310001 RAL-385 753 chr3L 21372702 21372750 chr3L 21379230 21379278 McClintock 12 6526 3.5 4.5 4.0 2.4 6576 chr3L 21372702 intergenic not near genes chr3L 21375990 intergenic not near genes chr3L 21379278 intergenic not near genes chr3L_12_21375001 chr3L_21375001 RAL-385 754 chr3L 21414519 21414531 chr3L 21414615 21414626 5 95 2.0 1.5 1.8 1.8 107 chr3L 21414519 intron rgn + chr3L 21414572 intron rgn + chr3L 21414626 intron rgn + chr3L_5_21410001 chr3L_21410001 RAL-385 755 chr3L 4341332 4341338 chr3L 21448026 21448026 10 17106692 9.5 10.0 9.8 0.9 17106694 chr3L 4341332 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_10_12890001 chr3L_12890001 RAL-385 756 chr3L 16736388 16736390 chr3L 21448026 21448026 4 4711638 2.5 10.0 6.2 0.6 4711638 chr3L 16736388 intron CG9701 + chr3L 19092207 intergenic MESR6 + chr3L 21448026 3` UTR Syx7 + chr3L_4_19090001 chr3L_19090001 RAL-385 757 chr3L 4341332 4341337 chr3L 21448027 21448027 8 17106694 9.5 10.0 9.8 0.7 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_8_12890001 chr3L_12890001 RAL-385 758 chr3L 21630595 21630629 chr3L 21630721 21630754 12 124 4.0 3.0 3.5 2.7 159 chr3L 21630595 intron MED1 - chr3L 21630674 intron MED1 - chr3L 21630754 intron MED1 - chr3L_12_21630001 chr3L_21630001 RAL-385 759 chr3L 21656994 21657023 chr3L 21657107 21657112 5 108 2.0 5.0 3.5 1.1 118 chr3L 21656994 intron CG43980 + chr3L 21657053 intron CG43980 + chr3L 21657112 intron CG43980 + chr3L_5_21655001 chr3L_21655001 RAL-385 760 chr3L 21766909 21766950 chr3L 21767205 21767209 6 287 1.5 1.5 1.5 2.4 300 chr3L 21766909 intron Syn1 - chr3L 21767059 intron Syn1 - chr3L 21767209 intron Syn1 - chr3L_6_21765001 chr3L_21765001 RAL-385 761 chr3L 21972513 21972551 chr3L 21972612 21972644 8 96 4.5 4.0 4.2 1.5 131 chr3L 21972513 intron CG7470 + chr3L 21972578 intron CG7470 + chr3L 21972644 intron CG7470 + chr3L_8_21970001 chr3L_21970001 RAL-385 762 chr3L 22099665 22099705 chr3L 22105867 22105911 3S18 4 6196 0.0 2.5 1.2 1.8 6246 chr3L 22099665 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105911 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-385 763 chr3L 22107666 22107708 chr3L 22107868 22107910 4 202 1.5 4.0 2.8 1.1 244 chr3L 22107666 intergenic not near genes chr3L 22107788 intergenic not near genes chr3L 22107910 intergenic not near genes chr3L_4_22105001 chr3L_22105001 RAL-385 764 chr3L 22130489 22130501 chr3L 22130645 22130667 4 164 5.0 2.0 3.5 0.9 178 chr3L 22130489 intergenic not near genes chr3L 22130578 intergenic not near genes chr3L 22130667 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-385 765 chr3L 22351126 22351151 chr3L 22351240 22351245 4 108 1.0 1.0 1.0 2.0 119 chr3L 22351126 intron Ten-m - chr3L 22351186 intron Ten-m - chr3L 22351245 intron Ten-m - chr3L_4_22350001 chr3L_22350001 RAL-385 766 chr3L 22447177 22447224 chr3L 22447287 22447335 15 108 2.5 3.0 2.8 3.9 158 chr3L 22447177 intergenic not near genes chr3L 22447256 intergenic not near genes chr3L 22447335 intergenic not near genes chr3L_15_22445001 chr3L_22445001 RAL-385 767 chr3L 22522688 22522713 chr3L 22522785 22522809 10 94 3.5 1.0 2.2 3.1 121 chr3L 22522688 intergenic not near genes chr3L 22522748 intergenic not near genes chr3L 22522809 intergenic not near genes chr3L_10_22520001 chr3L_22520001 RAL-385 768 chr3L 22603910 22603949 chr3L 22604011 22604015 6 95 2.0 2.5 2.2 1.9 105 chr3L 22603910 intron CG14459 - chr3L 22603962 intron CG14459 - chr3L 22604015 intron CG14459 - chr3L_6_22600001 chr3L_22600001 RAL-385 769 chr3L 22617175 22617222 chr3L 22624647 22624692 blood 8 7464 1.0 4.5 2.8 2.1 7517 chr3L 22617175 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624692 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-385 770 chr3L 22761380 22761397 chr3L 22766834 22766845 Ivk 5 5453 4.0 4.5 4.2 1.0 5465 chr3L 22761380 intron SPoCk + chr3L 22764112 intron SPoCk + chr3L 22766845 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-385 771 chr3L 22786063 22786112 chr3L 22788481 22788529 12 2425 25.0 25.5 25.2 0.5 2466 chr3L 22786063 3` UTR SPoCk + chr3L 22787296 3` UTR SPoCk + chr3L 22788529 exon CG14448 + chr3L_12_22785001 chr3L_22785001 RAL-385 772 chr3L 22844323 22844375 chr3L 22844573 22844625 10 250 2.0 4.0 3.0 2.5 302 chr3L 22844323 intergenic not near genes chr3L 22844474 intergenic not near genes chr3L 22844625 intergenic not near genes chr3L_10_22840001 chr3L_22840001 RAL-385 773 chr3L 22853456 22853703 chr3L 22853548 22853779 16 95 2.0 2.0 2.0 5.3 323 chr3L 22853456 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853618 5` UTR CR43426 + chr3L 22853779 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-385 774 chr3L 22866000 22866012 chr3L 22867116 22867152 Doc 4 1140 2.0 4.0 3.0 1.0 1152 chr3L 22866000 intron CG33170 + chr3L 22866576 intron CG33170 + chr3L 22867152 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-385 775 chr3L 20525228 20525230 chr3L 22908066 22908066 6 2382837 4.5 27.0 15.8 0.4 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-385 776 chr3L 22908066 22908066 chr3L 24821492 24821494 16 1913428 24.0 6.5 15.2 1.0 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_16_23860001 chr3L_23860001 RAL-385 777 chr3L 22908067 22908067 chr3L 24821491 24821494 10 1913426 23.5 6.5 15.0 0.6 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_10_23860001 chr3L_23860001 RAL-385 778 chr3L 22912748 22912791 chr3L 22912849 22912892 13 99 3.0 3.5 3.2 3.1 144 chr3L 22912748 intron CG12768 + chr3L 22912820 intron CG12768 + chr3L 22912892 intron CG12768 + chr3L_13_22910001 chr3L_22910001 RAL-385 779 chr3L 22915168 22915192 chr3L 22915295 22915318 6 127 7.0 2.5 4.8 1.0 150 chr3L 22915168 intron CG12768 + chr3L 22915243 intron CG12768 + chr3L 22915318 intron CG12768 + chr3L_6_22915001 chr3L_22915001 RAL-385 780 chr3L 22955367 22955416 chr3L 22956680 22956728 INE-1 5 1309 2.5 1.5 2.0 1.7 1361 chr3L 22955367 intergenic CG32461 - chr3L 22956048 intergenic not near genes chr3L 22956728 intergenic not near genes chr3L_5_22955001 chr3L_22955001 RAL-385 781 chr3L 22984027 22984050 chr3L 22984125 22984153 4 103 2.5 1.5 2.0 1.3 126 chr3L 22984027 intergenic not near genes chr3L 22984090 intergenic not near genes chr3L 22984153 intergenic not near genes chr3L_4_22980001 chr3L_22980001 RAL-385 782 chr3L 23213265 23213305 chr3L 23213652 23213676 4 382 2.5 2.0 2.2 1.2 411 chr3L 23213265 intron nAChRalpha4 + chr3L 23213470 intron nAChRalpha4 + chr3L 23213676 intron nAChRalpha4 + chr3L_4_23210001 chr3L_23210001 RAL-385 783 chr3L 23909133 23909169 chr3L 23912263 23912303 G3 5 3131 11.5 17.5 14.5 0.3 3170 chr3L 23909133 intron,5` UTR CG40470 -,CR43942 + chr3L 23910718 intron CG40470 - chr3L 23912303 exon CG40470 - chr3L_5_23910001 chr3L_23910001 RAL-385 784 chr3L 24282132 24282180 chr3L 24282236 24282257 8 93 3.0 1.5 2.2 2.5 125 chr3L 24282132 intron Snap25 + chr3L 24282194 intron Snap25 + chr3L 24282257 intron Snap25 + chr3L_8_24280001 chr3L_24280001 RAL-385 785 chr3L 24363228 24363255 chr3L 24363316 24363333 5 90 0.5 1.0 0.8 2.8 105 chr3L 24363228 intron nvd + chr3L 24363280 intron nvd + chr3L 24363333 intron nvd + chr3L_5_24360001 chr3L_24360001 RAL-385 786 chr3L 24791881 24791921 chr3L 24796680 24796705 Doc 5 4796 2.5 1.0 1.8 1.8 4824 chr3L 24791881 intergenic not near genes chr3L 24794293 intergenic not near genes chr3L 24796705 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-385 787 chr3L 18198930 18198935 chr3L 24821492 24821492 5 6622561 0.0 6.5 3.2 1.2 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-385 788 chr3L 20525228 20525230 chr3L 24821492 24821492 9 4296263 4.5 6.5 5.5 1.4 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_9_22670001 chr3L_22670001 RAL-385 789 chr3L 18198930 18198931 chr3L 24821493 24821493 11 6622562 0.0 7.0 3.5 2.4 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_11_21510001 chr3L_21510001 RAL-385 790 chr3L 20525228 20525230 chr3L 24821493 24821493 6 4296264 4.5 7.0 5.8 0.9 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-385 791 chr3L 26694930 26694949 chr3L 26695005 26695034 4 90 1.0 0.0 0.5 2.7 104 chr3L 26694930 intergenic not near genes chr3L 26694982 intergenic not near genes chr3L 26695034 intergenic not near genes chr3L_4_26690001 chr3L_26690001 RAL-385 792 chr3L 27980676 27980725 chr3L 27985494 27985543 Doc 6 4818 0.5 2.5 1.5 2.4 4867 chr3L 27980676 intron CG17514 - chr3L 27983110 intron CG17514 - chr3L 27985543 intron CG17514 - chr3L_6_27980001 chr3L_27980001 RAL-385 793 chr3R 1062376 1062409 chr3R 1062554 1062587 5 178 1.5 3.5 2.5 1.4 211 chr3R 1062376 intron CG15831 + chr3R 1062482 intron CG15831 + chr3R 1062587 intron CG15831 + chr3R_5_1060001 chr3R_1060001 RAL-385 794 chr3R 1850874 1850901 chr3R 1853521 1853548 INE-1 4 2644 0.0 1.5 0.8 2.2 2674 chr3R 1850874 intron CG42623 + chr3R 1852211 intron CG42623 + chr3R 1853548 intron CG42623 + chr3R_4_1850001 chr3R_1850001 RAL-385 795 chr3R 2534122 2534156 chr3R 2541710 2541737 4 7580 6.0 7.0 6.5 0.5 7615 chr3R 2534122 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541737 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-385 796 chr3R 4105023 4105065 chr3R 4110247 4110263 copia 5 5215 2.5 1.5 2.0 1.7 5240 chr3R 4105023 intergenic not near genes chr3R 4107643 intergenic not near genes chr3R 4110263 intergenic not near genes chr3R_5_4105001 chr3R_4105001 RAL-385 797 chr3R 4206060 4206104 chr3R 4211649 4211699 mdg3 6 5588 2.5 2.5 2.5 1.7 5639 chr3R 4206060 intron CG14636 - chr3R 4208880 intron CG14636 - chr3R 4211699 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-385 798 chr3R 4357567 4357585 chr3R 4357706 4357723 5 136 4.0 9.0 6.5 0.7 156 chr3R 4357567 intergenic not near genes chr3R 4357645 intergenic not near genes chr3R 4357723 intergenic not near genes chr3R_5_4355001 chr3R_4355001 RAL-385 799 chr3R 4366748 4366775 chr3R 4375151 4375178 roo 8 8399 4.5 7.5 6.0 1.1 8430 chr3R 4366748 3` UTR CG1090 + chr3R 4370963 intergenic not near genes chr3R 4375178 5` UTR CR44922 + chr3R_8_4370001 chr3R_4370001 RAL-385 800 chr3R 4408405 4408448 chr3R 4412722 4412772 Juan 5 4323 1.5 4.5 3.0 1.2 4367 chr3R 4408405 intron CG32944 - chr3R 4410588 intron CG32944 - chr3R 4412772 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-385 801 chr3R 4420579 4420610 chr3R 4420658 4420752 5 115 2.0 0.0 1.0 2.5 173 chr3R 4420579 intergenic not near genes chr3R 4420666 intergenic not near genes chr3R 4420752 intergenic not near genes chr3R_5_4420001 chr3R_4420001 RAL-385 802 chr3R 4609530 4609567 chr3R 4610714 4610751 1360 5 1179 1.5 1.5 1.5 2.0 1221 chr3R 4609530 intergenic not near genes chr3R 4610140 intergenic not near genes chr3R 4610751 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-385 803 chr3R 4658018 4658066 chr3R 4658120 4658161 7 88 1.5 1.5 1.5 2.8 143 chr3R 4658018 intergenic spartin + chr3R 4658090 intergenic spartin + chr3R 4658161 intergenic spartin + chr3R_7_4655001 chr3R_4655001 RAL-385 804 chr3R 4759727 4759742 chr3R 4761244 4761259 hopper2 5 1515 0.0 5.5 2.8 1.3 1532 chr3R 4759727 intron,intron atms +,CG44098 - chr3R 4760493 intron,intron atms +,CG44098 - chr3R 4761259 intron,intron atms +,CG44098 - chr3R_5_4760001 chr3R_4760001 RAL-385 805 chr3R 4769144 4769179 chr3R 4769242 4769277 6 98 0.5 1.0 0.8 3.3 133 chr3R 4769144 intron,intron atms +,CG44098 - chr3R 4769210 intron,intron atms +,CG44098 - chr3R 4769277 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-385 806 chr3R 4896272 4896324 chr3R 4896385 4896427 14 108 1.5 0.5 1.0 7.0 155 chr3R 4896272 intergenic CR45580 + chr3R 4896350 intergenic CR45580 + chr3R 4896427 5` UTR CR45580 + chr3R_14_4895001 chr3R_4895001 RAL-385 807 chr3R 5045823 5045875 chr3R 5052945 5052997 HMS-Beagle 4 7122 3.5 1.0 2.2 1.2 7174 chr3R 5045823 3` UTR CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052997 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-385 808 chr3R 5067962 5068014 chr3R 5073499 5073551 mdg3 12 5535 2.5 2.0 2.2 3.8 5589 chr3R 5067962 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073551 intergenic not near genes chr3R_12_5070001 chr3R_5070001 RAL-385 809 chr3R 5077497 5077524 chr3R 5077742 5077792 5 253 2.0 2.5 2.2 1.6 295 chr3R 5077497 intergenic corto - chr3R 5077644 intergenic corto - chr3R 5077792 3` UTR corto - chr3R_5_5075001 chr3R_5075001 RAL-385 810 chr3R 5236223 5236243 chr3R 5236361 5236391 5 146 5.5 4.0 4.8 0.9 168 chr3R 5236223 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236307 3` UTR rtp - chr3R 5236391 3` UTR rtp - chr3R_5_5235001 chr3R_5235001 RAL-385 811 chr3R 5338397 5338427 chr3R 5343579 5343607 Rt1c 7 5186 3.5 4.0 3.8 1.5 5210 chr3R 5338397 intron mtd - chr3R 5341002 intron mtd - chr3R 5343607 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-385 812 chr3R 5445947 5445982 chr3R 5452422 5452462 Burdock 6 6479 4.5 2.0 3.2 1.4 6515 chr3R 5445947 intron CG14669 + chr3R 5449204 intron CG14669 + chr3R 5452462 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-385 813 chr3R 5726077 5726122 chr3R 5726254 5726290 6 176 1.5 2.5 2.0 2.0 213 chr3R 5726077 intergenic not near genes chr3R 5726184 intergenic not near genes chr3R 5726290 intergenic not near genes chr3R_6_5725001 chr3R_5725001 RAL-385 814 chr3R 5735578 5735579 chr3R 5736980 5737005 5 1407 6.5 13.0 9.8 0.5 1427 chr3R 5735578 exon CG2100 - chr3R 5736292 5` UTR CG2100 - chr3R 5737005 exon CG1236 + chr3R_5_5735001 chr3R_5735001 RAL-385 815 chr3R 5745999 5746041 chr3R 5746260 5746302 pogo 8 258 1.5 4.0 2.8 2.1 303 chr3R 5745999 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746302 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-385 816 chr3R 5747000 5747020 chr3R 5753211 5753225 diver 4 6207 5.5 3.5 4.5 0.7 6225 chr3R 5747000 intergenic Madm + chr3R 5750112 intergenic not near genes chr3R 5753225 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-385 817 chr3R 5747028 5747043 chr3R 5753210 5753254 diver 5 6205 4.0 3.0 3.5 1.1 6226 chr3R 5747028 intergenic Madm + chr3R 5750141 intergenic not near genes chr3R 5753254 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-385 818 chr3R 5769213 5769247 chr3R 5769331 5769335 5 111 2.5 0.0 1.2 2.3 122 chr3R 5769213 intron CG2082 - chr3R 5769274 intron CG2082 - chr3R 5769335 intron CG2082 - chr3R_5_5765001 chr3R_5765001 RAL-385 819 chr3R 5809105 5809143 chr3R 5809366 5809404 pogo 7 254 1.5 4.5 3.0 1.8 299 chr3R 5809105 3` UTR CG11000 + chr3R 5809254 3` UTR CG11000 + chr3R 5809404 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-385 820 chr3R 5822363 5822400 chr3R 5823550 5823587 1360 7 1186 3.0 5.0 4.0 1.4 1224 chr3R 5822363 3` UTR CG2023 - chr3R 5822975 3` UTR CG2023 - chr3R 5823587 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-385 821 chr3R 5927556 5927592 chr3R 5927799 5927806 pogo 8 245 2.5 2.0 2.2 2.5 250 chr3R 5927556 intron CG34113 - chr3R 5927681 intron CG34113 - chr3R 5927806 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-385 822 chr3R 6048432 6048462 chr3R 6048529 6048565 8 93 3.5 1.5 2.5 2.3 133 chr3R 6048432 intergenic not near genes chr3R 6048498 intergenic not near genes chr3R 6048565 intergenic not near genes chr3R_8_6045001 chr3R_6045001 RAL-385 823 chr3R 6048463 6048476 chr3R 6048526 6048577 6 95 2.5 1.0 1.8 2.1 114 chr3R 6048463 intergenic not near genes chr3R 6048520 intergenic not near genes chr3R 6048577 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-385 824 chr3R 6121168 6121183 chr3R 6121406 6121421 BS 4 238 0.5 10.0 5.2 0.6 253 chr3R 6121168 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121421 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-385 825 chr3R 6158053 6158101 chr3R 6158287 6158335 9 234 3.0 1.5 2.2 2.8 282 chr3R 6158053 intergenic not near genes chr3R 6158194 intergenic not near genes chr3R 6158335 intergenic not near genes chr3R_9_6155001 chr3R_6155001 RAL-385 826 chr3R 6175173 6175201 chr3R 6182460 6182492 HMS-Beagle2 7 7285 5.0 1.0 3.0 1.8 7319 chr3R 6175173 intergenic Osi1 + chr3R 6178832 intron CR45194 + chr3R 6182492 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-385 827 chr3R 6191168 6191192 chr3R 6191262 6191292 7 95 4.0 7.5 5.8 1.0 124 chr3R 6191168 intron NPFR + chr3R 6191230 intron NPFR + chr3R 6191292 intron NPFR + chr3R_7_6190001 chr3R_6190001 RAL-385 828 chr3R 6192966 6192988 chr3R 6193127 6193149 4 161 4.0 1.0 2.5 1.1 183 chr3R 6192966 intron NPFR + chr3R 6193058 intron NPFR + chr3R 6193149 intron NPFR + chr3R_4_6190001 chr3R_6190001 RAL-385 829 chr3R 6461560 6461607 chr3R 6461660 6461707 4 100 4.5 3.0 3.8 0.8 147 chr3R 6461560 intergenic not near genes chr3R 6461634 intergenic not near genes chr3R 6461707 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-385 830 chr3R 6510008 6510020 chr3R 6515109 6515121 jockey 4 5101 6.5 3.0 4.8 0.7 5113 chr3R 6510008 intergenic not near genes chr3R 6512564 intergenic not near genes chr3R 6515121 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-385 831 chr3R 6524943 6524992 chr3R 6525056 6525075 8 104 2.0 2.5 2.2 2.5 132 chr3R 6524943 intergenic not near genes chr3R 6525009 intergenic not near genes chr3R 6525075 intergenic not near genes chr3R_8_6525001 chr3R_6525001 RAL-385 832 chr3R 6526329 6526379 chr3R 6526540 6526584 6 204 2.0 2.0 2.0 2.0 255 chr3R 6526329 intergenic not near genes chr3R 6526456 intergenic not near genes chr3R 6526584 intergenic not near genes chr3R_6_6525001 chr3R_6525001 RAL-385 833 chr3R 6737512 6737524 chr3R 6739289 6739331 Doc 4 1793 0.5 2.0 1.2 1.8 1819 chr3R 6737512 intron pb - chr3R 6738422 intron pb - chr3R 6739331 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-385 834 chr3R 6862213 6862237 chr3R 6862320 6862341 6 105 3.5 3.0 3.2 1.4 128 chr3R 6862213 intergenic not near genes chr3R 6862277 intergenic not near genes chr3R 6862341 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-385 835 chr3R 6968430 6968471 chr3R 6968529 6968575 6 100 1.0 3.0 2.0 2.0 145 chr3R 6968430 intron Antp - chr3R 6968502 intron Antp - chr3R 6968575 intron Antp - chr3R_6_6965001 chr3R_6965001 RAL-385 836 chr3R 7094694 7094694 chr3R 7773344 7773344 6 678650 11.5 8.0 9.8 0.6 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_6_7430001 chr3R_7430001 RAL-385 837 chr3R 7103285 7103289 chr3R 7103361 7103368 5 85 6.5 3.5 5.0 0.8 83 chr3R 7103285 intron Alh - chr3R 7103326 intron Alh - chr3R 7103368 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-385 838 chr3R 7126484 7126529 chr3R 7126598 7126644 11 115 2.5 2.0 2.2 3.4 160 chr3R 7126484 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126564 3` UTR CG10068 - chr3R 7126644 3` UTR CG10068 - chr3R_11_7125001 chr3R_7125001 RAL-385 839 chr3R 7173661 7173708 chr3R 7173761 7173783 10 97 4.0 4.0 4.0 2.0 122 chr3R 7173661 intron sas + chr3R 7173722 intron sas + chr3R 7173783 intron sas + chr3R_10_7170001 chr3R_7170001 RAL-385 840 chr3R 7217446 7217485 chr3R 7217687 7217726 4 240 3.0 1.5 2.2 1.2 280 chr3R 7217446 intergenic CG14605 -,CG14606 - chr3R 7217586 intergenic CG14605 - chr3R 7217726 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-385 841 chr3R 7251834 7251846 chr3R 7251911 7251933 6 87 3.0 2.5 2.8 1.6 99 chr3R 7251834 exon Obp84a - chr3R 7251884 exon Obp84a - chr3R 7251933 exon Obp84a - chr3R_6_7250001 chr3R_7250001 RAL-385 842 chr3R 7252407 7252420 chr3R 7252496 7252513 5 99 4.5 5.0 4.8 0.9 106 chr3R 7252407 3` UTR Gld - chr3R 7252460 3` UTR Gld - chr3R 7252513 3` UTR Gld - chr3R_5_7250001 chr3R_7250001 RAL-385 843 chr3R 7538651 7538682 chr3R 7538753 7538771 5 91 4.5 7.0 5.8 0.7 120 chr3R 7538651 intergenic alpha-Est4 -,alpha-Est3 - chr3R 7538711 intergenic alpha-Est4 -,alpha-Est3 - chr3R 7538771 intergenic alpha-Est4 -,alpha-Est3 - chr3R_5_7535001 chr3R_7535001 RAL-385 844 chr3R 7677903 7677943 chr3R 7678028 7678066 5 119 0.5 1.5 1.0 2.5 163 chr3R 7677903 intron Nlg1 + chr3R 7677984 intron Nlg1 + chr3R 7678066 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-385 845 chr3R 7694558 7694607 chr3R 7713639 7713640 invader3 6 19072 2.0 1.5 1.8 2.1 19082 chr3R 7694558 3` UTR Nlg1 + chr3R 7704099 intergenic not near genes chr3R 7713640 intergenic not near genes chr3R_6_7700001 chr3R_7700001 RAL-385 846 chr3R 7729466 7729492 chr3R 7737409 7737430 Stalker2 8 7945 2.0 5.0 3.5 1.8 7964 chr3R 7729466 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737430 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-385 847 chr3R 7094694 7094694 chr3R 7773344 7773344 4 678650 11.5 8.0 9.8 0.4 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_4_7430001 chr3R_7430001 RAL-385 848 chr3R 7773344 7773344 chr3R 13217322 13217327 10 5443979 8.5 6.5 7.5 1.2 5443983 chr3R 7773344 intergenic not near genes chr3R 10495336 intergenic not near genes chr3R 13217327 intergenic not near genes chr3R_10_10495001 chr3R_10495001 RAL-385 849 chr3R 7773344 7773344 chr3R 30278264 30278265 7 22504921 8.5 4.0 6.2 1.0 22504921 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278265 5` UTR hdc + chr3R_7_19025001 chr3R_19025001 RAL-385 850 chr3R 7773344 7773344 chr3R 7890529 7890530 6 117185 8.5 9.0 8.8 0.6 117186 chr3R 7773344 intergenic not near genes chr3R 7831937 intron CG34384 + chr3R 7890530 intron mRpS9 - chr3R_6_7830001 chr3R_7830001 RAL-385 851 chr3R 7773344 7773344 chr3R 7890532 7890535 9 117189 8.5 8.0 8.2 1.0 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_9_7830001 chr3R_7830001 RAL-385 852 chr3R 7961726 7961770 chr3R 7961825 7961846 11 97 2.5 1.5 2.0 3.7 120 chr3R 7961726 intron dsx - chr3R 7961786 intron dsx - chr3R 7961846 intron dsx - chr3R_11_7960001 chr3R_7960001 RAL-385 853 chr3R 7973293 7973346 chr3R 7974374 7974430 1360 5 1081 1.0 4.0 2.5 1.4 1137 chr3R 7973293 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974430 3` UTR CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-385 854 chr3R 8056151 8056180 chr3R 8056306 8056320 4 158 1.0 0.5 0.8 2.2 169 chr3R 8056151 intergenic CG43060 + chr3R 8056236 intergenic CG43060 + chr3R 8056320 intergenic CG43060 + chr3R_4_8055001 chr3R_8055001 RAL-385 855 chr3R 8082567 8082588 chr3R 8082664 8082685 7 96 3.5 5.5 4.5 1.3 118 chr3R 8082567 intron mAChR-B + chr3R 8082626 intron mAChR-B + chr3R 8082685 intron mAChR-B + chr3R_7_8080001 chr3R_8080001 RAL-385 856 chr3R 8094388 8094427 chr3R 8099713 8099752 Transpac 4 5324 3.0 1.0 2.0 1.3 5364 chr3R 8094388 intron CG7900 + chr3R 8097070 intron CG7900 + chr3R 8099752 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-385 857 chr3R 8107365 8107417 chr3R 8107519 8107561 4 152 2.5 2.0 2.2 1.2 196 chr3R 8107365 intron puc + chr3R 8107463 intron puc + chr3R 8107561 intron puc + chr3R_4_8105001 chr3R_8105001 RAL-385 858 chr3R 8182644 8182674 chr3R 8182758 8182774 7 108 3.5 4.5 4.0 1.4 130 chr3R 8182644 intergenic not near genes chr3R 8182709 intergenic not near genes chr3R 8182774 intergenic not near genes chr3R_7_8180001 chr3R_8180001 RAL-385 859 chr3R 8393587 8393601 chr3R 8393691 8393699 4 102 0.5 7.5 4.0 0.8 112 chr3R 8393587 intron CG45263 - chr3R 8393643 intron CG45263 - chr3R 8393699 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-385 860 chr3R 8430794 8430835 chr3R 8430974 8430974 5 166 0.5 0.5 0.5 3.3 180 chr3R 8430794 intron CG45263 - chr3R 8430884 intron CG45263 - chr3R 8430974 intron CG45263 - chr3R_5_8430001 chr3R_8430001 RAL-385 861 chr3R 8541334 8541368 chr3R 8541430 8541469 6 94 1.0 2.5 1.8 2.1 135 chr3R 8541334 intergenic not near genes chr3R 8541402 intergenic not near genes chr3R 8541469 intergenic not near genes chr3R_6_8540001 chr3R_8540001 RAL-385 862 chr3R 8563571 8563596 chr3R 8563674 8563695 4 110 1.0 2.0 1.5 1.6 124 chr3R 8563571 3` UTR CR44291 - chr3R 8563633 3` UTR CR44291 - chr3R 8563695 3` UTR CR44291 - chr3R_4_8560001 chr3R_8560001 RAL-385 863 chr3R 8621527 8621573 chr3R 8621618 8621631 4 73 2.0 1.5 1.8 1.4 104 chr3R 8621527 intron 5-HT2B + chr3R 8621579 intron 5-HT2B + chr3R 8621631 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-385 864 chr3R 8685279 8685310 chr3R 8685395 8685430 9 120 1.0 0.5 0.8 5.0 151 chr3R 8685279 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685430 intron CR44937 - chr3R_9_8685001 chr3R_8685001 RAL-385 865 chr3R 8917872 8917911 chr3R 8917972 8918011 8 97 1.0 2.0 1.5 3.2 139 chr3R 8917872 intron pyd - chr3R 8917942 intron pyd - chr3R 8918011 intron pyd - chr3R_8_8915001 chr3R_8915001 RAL-385 866 chr3R 9095272 9095319 chr3R 9095379 9095426 8 105 2.0 4.5 3.2 1.9 154 chr3R 9095272 intron pum - chr3R 9095349 intron pum - chr3R 9095426 intron pum - chr3R_8_9095001 chr3R_9095001 RAL-385 867 chr3R 9101819 9101870 chr3R 9101937 9101976 7 115 0.5 2.5 1.5 2.8 157 chr3R 9101819 intron pum - chr3R 9101898 intron pum - chr3R 9101976 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-385 868 chr3R 9149433 9149464 chr3R 9149533 9149563 4 100 2.5 0.0 1.2 1.8 130 chr3R 9149433 intron pum - chr3R 9149498 intron pum - chr3R 9149563 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-385 869 chr3R 9278773 9278808 chr3R 9284042 9284088 Rt1a 6 5274 0.5 2.0 1.2 2.7 5315 chr3R 9278773 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284088 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-385 870 chr3R 9361806 9361846 chr3R 9362056 9362107 pogo 11 258 3.0 1.5 2.2 3.4 301 chr3R 9361806 3` UTR CG45050 + chr3R 9361956 3` UTR CG45050 + chr3R 9362107 3` UTR CG45050 + chr3R_11_9360001 chr3R_9360001 RAL-385 871 chr3R 9434674 9434721 chr3R 9434781 9434795 6 99 3.0 2.5 2.8 1.6 121 chr3R 9434674 intron ps + chr3R 9434734 intron ps + chr3R 9434795 intron ps + chr3R_6_9430001 chr3R_9430001 RAL-385 872 chr3R 10073767 10073800 chr3R 10073885 10073929 6 125 3.0 2.5 2.8 1.6 162 chr3R 10073767 intergenic nerfin-2 +,CG5361 - chr3R 10073848 3` UTR CG5361 - chr3R 10073929 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-385 873 chr3R 10104131 10104175 chr3R 10104227 10104253 7 92 3.0 3.5 3.2 1.7 122 chr3R 10104131 intron Fmr1 - chr3R 10104192 intron Fmr1 - chr3R 10104253 intron Fmr1 - chr3R_7_10100001 chr3R_10100001 RAL-385 874 chr3R 10140414 10140440 chr3R 10140524 10140549 5 109 1.0 2.0 1.5 2.0 135 chr3R 10140414 3` UTR TAF1B - chr3R 10140482 3` UTR TAF1B - chr3R 10140549 3` UTR TAF1B - chr3R_5_10140001 chr3R_10140001 RAL-385 875 chr3R 10194615 10194632 chr3R 10194726 10194743 5 111 3.5 2.0 2.8 1.3 128 chr3R 10194615 intron Syn + chr3R 10194679 intron Syn + chr3R 10194743 intron Syn + chr3R_5_10190001 chr3R_10190001 RAL-385 876 chr3R 10231774 10231807 chr3R 10237371 10237403 mdg3 4 5597 4.5 3.0 3.8 0.8 5629 chr3R 10231774 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237403 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-385 877 chr3R 10401887 10401918 chr3R 10402087 10402093 4 198 2.5 1.5 2.0 1.3 206 chr3R 10401887 exon mthl11 + chr3R 10401990 exon mthl11 + chr3R 10402093 exon mthl11 + chr3R_4_10400001 chr3R_10400001 RAL-385 878 chr3R 10651788 10651844 chr3R 10651907 10651963 8 116 1.0 2.5 1.8 2.9 175 chr3R 10651788 intergenic not near genes chr3R 10651876 intergenic not near genes chr3R 10651963 intergenic not near genes chr3R_8_10650001 chr3R_10650001 RAL-385 879 chr3R 10733568 10733599 chr3R 10733717 10733751 5 151 2.5 2.5 2.5 1.4 183 chr3R 10733568 intergenic not near genes chr3R 10733660 intergenic not near genes chr3R 10733751 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-385 880 chr3R 10785790 10785842 chr3R 10785889 10785941 11 97 1.0 5.0 3.0 2.8 151 chr3R 10785790 intron Rbp1 + chr3R 10785866 intron Rbp1 + chr3R 10785941 intron Rbp1 + chr3R_11_10785001 chr3R_10785001 RAL-385 881 chr3R 10804163 10804185 chr3R 10811715 10811737 17.6 4 7552 0.5 1.5 1.0 2.0 7574 chr3R 10804163 intergenic CG14692 - chr3R 10807950 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-385 882 chr3R 10870848 10870894 chr3R 10870949 10870995 10 94 4.0 2.5 3.2 2.4 147 chr3R 10870848 intergenic Fdh -,Tsp86D + chr3R 10870922 3` UTR Fdh - chr3R 10870995 3` UTR Fdh - chr3R_10_10870001 chr3R_10870001 RAL-385 883 chr3R 10900431 10900472 chr3R 10900524 10900569 4 96 1.0 0.5 0.8 2.2 138 chr3R 10900431 intergenic not near genes chr3R 10900500 intergenic not near genes chr3R 10900569 intergenic not near genes chr3R_4_10900001 chr3R_10900001 RAL-385 884 chr3R 10920031 10920070 chr3R 10920126 10920168 9 96 2.5 2.0 2.2 2.8 137 chr3R 10920031 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920168 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-385 885 chr3R 10994270 10994308 chr3R 10994369 10994403 4 96 3.5 0.5 2.0 1.3 133 chr3R 10994270 intron CG34114 + chr3R 10994336 intron CG34114 + chr3R 10994403 intron CG34114 + chr3R_4_10990001 chr3R_10990001 RAL-385 886 chr3R 11013888 11013935 chr3R 11013985 11014032 7 97 1.5 2.0 1.8 2.5 144 chr3R 11013888 intron CG34114 + chr3R 11013960 intron CG34114 + chr3R 11014032 intron CG34114 + chr3R_7_11010001 chr3R_11010001 RAL-385 887 chr3R 11197982 11198015 chr3R 11198084 11198119 6 112 2.5 1.0 1.8 2.1 137 chr3R 11197982 intron cu + chr3R 11198050 intron cu + chr3R 11198119 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-385 888 chr3R 11242245 11242278 chr3R 11242346 11242369 7 95 3.0 2.0 2.5 2.0 124 chr3R 11242245 3` UTR CG17734 - chr3R 11242307 3` UTR CG17734 - chr3R 11242369 3` UTR CG17734 - chr3R_7_11240001 chr3R_11240001 RAL-385 889 chr3R 11269449 11269463 chr3R 11269593 11269604 4 144 1.5 1.0 1.2 1.8 155 chr3R 11269449 3` UTR CR31386 - chr3R 11269526 3` UTR CR31386 - chr3R 11269604 3` UTR CR31386 - chr3R_4_11265001 chr3R_11265001 RAL-385 890 chr3R 11379225 11379260 chr3R 11388399 11388424 roo 11 9169 2.0 0.5 1.2 5.0 9199 chr3R 11379225 intron pros + chr3R 11383824 intron pros + chr3R 11388424 intron pros + chr3R_11_11380001 chr3R_11380001 RAL-385 891 chr3R 11640490 11640534 chr3R 11640605 11640649 6 114 2.5 2.0 2.2 1.9 159 chr3R 11640490 intron Csk - chr3R 11640570 intron Csk - chr3R 11640649 intron Csk - chr3R_6_11640001 chr3R_11640001 RAL-385 892 chr3R 11694714 11694749 chr3R 11694827 11694862 7 105 2.5 3.0 2.8 1.8 148 chr3R 11694714 intergenic Fer3 - chr3R 11694788 intergenic Fer3 - chr3R 11694862 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-385 893 chr3R 11710204 11710225 chr3R 11710291 11710306 4 88 2.0 1.5 1.8 1.4 102 chr3R 11710204 intergenic not near genes chr3R 11710255 intergenic not near genes chr3R 11710306 intergenic not near genes chr3R_4_11710001 chr3R_11710001 RAL-385 894 chr3R 11945382 11945404 chr3R 11945484 11945502 4 109 0.0 1.0 0.5 2.7 120 chr3R 11945382 intron Cad87A - chr3R 11945442 intron Cad87A - chr3R 11945502 intron Cad87A - chr3R_4_11945001 chr3R_11945001 RAL-385 895 chr3R 11957833 11957881 chr3R 11958136 11958154 S-element 7 297 2.5 0.5 1.5 2.8 321 chr3R 11957833 intergenic not near genes chr3R 11957994 intergenic not near genes chr3R 11958154 intergenic not near genes chr3R_7_11955001 chr3R_11955001 RAL-385 896 chr3R 12022864 12022904 chr3R 12025061 12025101 pogo 7 2190 2.5 2.5 2.5 2.0 2237 chr3R 12022864 intergenic not near genes chr3R 12023982 intergenic not near genes chr3R 12025101 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-385 897 chr3R 12080850 12080894 chr3R 12080947 12080991 5 98 2.5 2.0 2.2 1.6 141 chr3R 12080850 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080991 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-385 898 chr3R 12165847 12165896 chr3R 12165945 12165994 11 98 1.5 2.5 2.0 3.7 147 chr3R 12165847 intron Cpn - chr3R 12165920 intron Cpn - chr3R 12165994 intron Cpn - chr3R_11_12165001 chr3R_12165001 RAL-385 899 chr3R 12307212 12307255 chr3R 12307315 12307351 5 99 2.0 1.5 1.8 1.8 139 chr3R 12307212 intergenic not near genes chr3R 12307282 intergenic not near genes chr3R 12307351 intergenic not near genes chr3R_5_12305001 chr3R_12305001 RAL-385 900 chr3R 12376395 12376417 chr3R 12376491 12376501 4 93 0.5 1.5 1.0 2.0 106 chr3R 12376395 exon GstD5 + chr3R 12376448 3` UTR GstD5 + chr3R 12376501 3` UTR GstD5 + chr3R_4_12375001 chr3R_12375001 RAL-385 901 chr3R 12546448 12546485 chr3R 12546536 12546587 10 93 2.0 5.0 3.5 2.2 139 chr3R 12546448 intron Octbeta3R - chr3R 12546518 intron Octbeta3R - chr3R 12546587 intron Octbeta3R - chr3R_10_12545001 chr3R_12545001 RAL-385 902 chr3R 12739017 12739068 chr3R 12739113 12739164 7 95 0.5 3.5 2.0 2.3 147 chr3R 12739017 intergenic not near genes chr3R 12739090 intergenic not near genes chr3R 12739164 intergenic CG5724 + chr3R_7_12735001 chr3R_12735001 RAL-385 903 chr3R 12845922 12845952 chr3R 12846073 12846075 4 144 1.0 2.5 1.8 1.4 153 chr3R 12845922 intron beat-Va - chr3R 12845998 intron beat-Va - chr3R 12846075 intron beat-Va - chr3R_4_12845001 chr3R_12845001 RAL-385 904 chr3R 12864528 12864542 chr3R 12865050 12865064 roo 4 522 2.5 2.5 2.5 1.1 536 chr3R 12864528 intergenic not near genes chr3R 12864796 intergenic not near genes chr3R 12865064 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-385 905 chr3R 13059951 13059972 chr3R 13060157 13060177 4 210 2.0 2.5 2.2 1.2 226 chr3R 13059951 intron sim + chr3R 13060064 intron sim + chr3R 13060177 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-385 906 chr3R 7773344 7773344 chr3R 13217322 13217327 4 5443980 8.5 6.5 7.5 0.5 5443983 chr3R 7773344 intergenic not near genes chr3R 10495336 intergenic not near genes chr3R 13217327 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-385 907 chr3R 13276979 13277008 chr3R 13277087 13277117 4 106 2.0 2.5 2.2 1.2 138 chr3R 13276979 intergenic not near genes chr3R 13277048 intergenic not near genes chr3R 13277117 intergenic not near genes chr3R_4_13275001 chr3R_13275001 RAL-385 908 chr3R 13348988 13349034 chr3R 13349084 13349129 9 92 1.0 3.5 2.2 2.8 141 chr3R 13348988 intergenic not near genes chr3R 13349058 intergenic not near genes chr3R 13349129 intergenic not near genes chr3R_9_13345001 chr3R_13345001 RAL-385 909 chr3R 13435369 13435420 chr3R 13435564 13435615 9 192 0.5 2.5 1.5 3.6 246 chr3R 13435369 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435615 intergenic not near genes chr3R_9_13435001 chr3R_13435001 RAL-385 910 chr3R 13603036 13603333 chr3R 13603147 13603445 8 111 2.5 2.5 2.5 2.3 409 chr3R 13603036 intergenic not near genes chr3R 13603240 intergenic not near genes chr3R 13603445 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-385 911 chr3R 13604041 13604091 chr3R 13604296 13604311 7 245 1.5 5.0 3.2 1.7 270 chr3R 13604041 intergenic not near genes chr3R 13604176 intergenic not near genes chr3R 13604311 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-385 912 chr3R 13625672 13625721 chr3R 13625773 13625822 6 101 1.0 1.0 1.0 3.0 150 chr3R 13625672 intergenic not near genes chr3R 13625747 intergenic not near genes chr3R 13625822 intergenic not near genes chr3R_6_13625001 chr3R_13625001 RAL-385 913 chr3R 13673165 13673218 chr3R 13673582 13673635 6 410 2.5 4.0 3.2 1.4 470 chr3R 13673165 intron Task6 - chr3R 13673400 intron Task6 - chr3R 13673635 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-385 914 chr3R 13693028 13693028 chr3R 21907534 21907535 9 8214507 17.0 9.5 13.2 0.6 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-385 915 chr3R 13863661 13863700 chr3R 13863766 13863807 5 104 2.5 1.5 2.0 1.7 146 chr3R 13863661 intergenic not near genes chr3R 13863734 intergenic not near genes chr3R 13863807 intergenic not near genes chr3R_5_13860001 chr3R_13860001 RAL-385 916 chr3R 14058131 14058153 chr3R 14058245 14058293 4 134 1.5 2.0 1.8 1.4 162 chr3R 14058131 intron foxo + chr3R 14058212 intron foxo + chr3R 14058293 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-385 917 chr3R 7773344 7773344 chr3R 14104440 14104440 9 6331096 8.5 3.5 6.0 1.3 6331096 chr3R 7773344 intergenic not near genes chr3R 10938892 intergenic not near genes chr3R 14104440 intergenic CG12402 - chr3R_9_10935001 chr3R_10935001 RAL-385 918 chr3R 14109093 14109113 chr3R 14109174 14109212 5 97 1.0 4.0 2.5 1.4 119 chr3R 14109093 intergenic CR44237 -,Or88a + chr3R 14109152 intergenic CR44237 -,Or88a + chr3R 14109212 intergenic CR44237 -,Or88a + chr3R_5_14105001 chr3R_14105001 RAL-385 919 chr3R 14180792 14180820 chr3R 14185577 14185589 F-element 8 4782 3.0 0.5 1.8 2.9 4797 chr3R 14180792 intron Dop1R1 - chr3R 14183190 intron Dop1R1 - chr3R 14185589 intron Dop1R1 - chr3R_8_14180001 chr3R_14180001 RAL-385 920 chr3R 14194424 14194458 chr3R 14203578 14203627 roo 5 9158 2.0 2.5 2.2 1.6 9203 chr3R 14194424 intron Dop1R1 - chr3R 14199026 intron Dop1R1 - chr3R 14203627 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-385 921 chr3R 14327671 14327725 chr3R 14327773 14327807 11 99 4.5 2.5 3.5 2.4 136 chr3R 14327671 3` UTR CG3321 + chr3R 14327739 intergenic CG3321 +,spn-B + chr3R 14327807 intergenic CG3321 +,spn-B + chr3R_11_14325001 chr3R_14325001 RAL-385 922 chr3R 14608452 14608472 chr3R 14608564 14608584 4 112 1.0 3.0 2.0 1.3 132 chr3R 14608452 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608584 intergenic not near genes chr3R_4_14605001 chr3R_14605001 RAL-385 923 chr3R 14704382 14704416 chr3R 14704459 14704513 5 86 2.5 1.0 1.8 1.8 131 chr3R 14704382 intron kibra - chr3R 14704448 intron kibra - chr3R 14704513 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-385 924 chr3R 14821594 14821646 chr3R 14821763 14821788 11 159 3.0 3.0 3.0 2.8 194 chr3R 14821594 intron btsz - chr3R 14821691 intron btsz - chr3R 14821788 intron btsz - chr3R_11_14820001 chr3R_14820001 RAL-385 925 chr3R 14898456 14898498 chr3R 14898595 14898638 7 139 4.0 2.0 3.0 1.8 182 chr3R 14898456 intergenic Nup93-2 -,CG3817 + chr3R 14898547 intergenic Nup93-2 -,CG3817 + chr3R 14898638 intergenic CG3817 +,Nup93-2 - chr3R_7_14895001 chr3R_14895001 RAL-385 926 chr3R 14923691 14923743 chr3R 14923787 14923840 4 95 2.0 1.5 1.8 1.4 149 chr3R 14923691 3` UTR CR45598 - chr3R 14923766 intergenic CR45598 - chr3R 14923840 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-385 927 chr3R 14952194 14952218 chr3R 14952344 14952388 5 160 1.5 1.0 1.2 2.3 194 chr3R 14952194 intergenic not near genes chr3R 14952291 intergenic not near genes chr3R 14952388 intergenic not near genes chr3R_5_14950001 chr3R_14950001 RAL-385 928 chr3R 15059308 15059477 chr3R 15059475 15059584 BS 8 166 0.0 0.0 0.0 8.0 276 chr3R 15059308 intron dpr9 - chr3R 15059446 intron dpr9 - chr3R 15059584 intron dpr9 - chr3R_8_15055001 chr3R_15055001 RAL-385 929 chr3R 15079789 15079824 chr3R 15080050 15080085 pogo 7 257 6.0 0.0 3.0 1.8 296 chr3R 15079789 3` UTR CG6966 - chr3R 15079937 3` UTR CG6966 - chr3R 15080085 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-385 930 chr3R 15102495 15102525 chr3R 15109773 15109799 412 4 7275 1.0 3.0 2.0 1.3 7304 chr3R 15102495 intron CG42788 - chr3R 15106147 intron CG42788 - chr3R 15109799 intron CG42788 - chr3R_4_15105001 chr3R_15105001 RAL-385 931 chr3R 15132046 15132065 chr3R 15135124 15135125 Juan 9 3078 4.0 5.0 4.5 1.6 3079 chr3R 15132046 intergenic CG42788 - chr3R 15133586 intergenic not near genes chr3R 15135125 intergenic CG6912 - chr3R_9_15130001 chr3R_15130001 RAL-385 932 chr3R 15143909 15143919 chr3R 15144112 15144122 5 203 3.0 2.0 2.5 1.4 213 chr3R 15143909 intron GlyS - chr3R 15144016 intron GlyS - chr3R 15144122 intron GlyS - chr3R_5_15140001 chr3R_15140001 RAL-385 933 chr3R 15320379 15320422 chr3R 15320642 15320685 12 261 3.0 3.5 3.2 2.9 306 chr3R 15320379 5` UTR CG44040 + chr3R 15320532 exon CG44040 + chr3R 15320685 3` UTR CG44040 + chr3R_12_15320001 chr3R_15320001 RAL-385 934 chr3R 15406132 15406145 chr3R 15406233 15406246 4 101 7.5 1.0 4.2 0.8 114 chr3R 15406132 intron CG6125 - chr3R 15406189 intron CG6125 - chr3R 15406246 intron CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-385 935 chr3R 15406147 15406170 chr3R 15406226 15406271 4 88 4.0 1.0 2.5 1.1 124 chr3R 15406147 intron CG6125 - chr3R 15406209 intron CG6125 - chr3R 15406271 intron CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-385 936 chr3R 15499415 15499444 chr3R 15499518 15499519 4 98 3.0 0.5 1.8 1.4 104 chr3R 15499415 intergenic not near genes chr3R 15499467 intergenic not near genes chr3R 15499519 intergenic not near genes chr3R_4_15495001 chr3R_15495001 RAL-385 937 chr3R 15592878 15592922 chr3R 15592982 15593026 8 100 1.5 3.5 2.5 2.3 148 chr3R 15592878 intergenic not near genes chr3R 15592952 intergenic not near genes chr3R 15593026 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-385 938 chr3R 15594657 15594669 chr3R 15594748 15594772 4 96 0.0 2.0 1.0 2.0 115 chr3R 15594657 intergenic not near genes chr3R 15594714 intergenic not near genes chr3R 15594772 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-385 939 chr3R 15618748 15618760 chr3R 15626219 15626233 blood 4 7478 2.0 4.0 3.0 1.0 7485 chr3R 15618748 intergenic not near genes chr3R 15622490 intergenic not near genes chr3R 15626233 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-385 940 chr3R 15868919 15868940 chr3R 15869019 15869040 6 100 9.0 0.0 4.5 1.1 121 chr3R 15868919 intron CG31183 - chr3R 15868980 intron CG31183 - chr3R 15869040 intron CG31183 - chr3R_6_15865001 chr3R_15865001 RAL-385 941 chr3R 15878602 15878636 chr3R 15878683 15878687 5 75 2.5 1.5 2.0 1.7 85 chr3R 15878602 intergenic not near genes chr3R 15878644 intergenic not near genes chr3R 15878687 intergenic not near genes chr3R_5_15875001 chr3R_15875001 RAL-385 942 chr3R 15950162 15950178 chr3R 15950254 15950276 5 96 5.0 4.0 4.5 0.9 114 chr3R 15950162 intron Sap47 + chr3R 15950219 intron,3` UTR Sap47 +,CG31088 - chr3R 15950276 intron,exon Sap47 +,CG31088 - chr3R_5_15950001 chr3R_15950001 RAL-385 943 chr3R 16033399 16033438 chr3R 16033495 16033539 6 99 2.0 1.0 1.5 2.4 140 chr3R 16033399 intron pnr + chr3R 16033469 intron pnr + chr3R 16033539 intron pnr + chr3R_6_16030001 chr3R_16030001 RAL-385 944 chr3R 16167810 16167831 chr3R 16167919 16167946 7 114 0.5 3.0 1.8 2.5 136 chr3R 16167810 intron CG6006 + chr3R 16167878 intron CG6006 + chr3R 16167946 exon CG6006 + chr3R_7_16165001 chr3R_16165001 RAL-385 945 chr3R 16225082 16225110 chr3R 16225187 16225209 8 104 4.0 2.5 3.2 1.9 127 chr3R 16225082 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225209 intergenic tara + chr3R_8_16225001 chr3R_16225001 RAL-385 946 chr3R 16246525 16246557 chr3R 16246621 16246643 6 94 0.0 5.0 2.5 1.7 118 chr3R 16246525 intron tara + chr3R 16246584 intron tara + chr3R 16246643 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-385 947 chr3R 16374279 16374324 chr3R 16374413 16374461 12 131 2.5 4.0 3.2 2.9 182 chr3R 16374279 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374461 3` UTR ss - chr3R_12_16370001 chr3R_16370001 RAL-385 948 chr3R 16732134 16732171 chr3R 16732250 16732287 5 114 0.0 5.5 2.8 1.3 153 chr3R 16732134 intron Ubx - chr3R 16732210 intron Ubx - chr3R 16732287 intron Ubx - chr3R_5_16730001 chr3R_16730001 RAL-385 949 chr3R 16734862 16734875 chr3R 16734965 16734978 6 102 0.0 2.5 1.2 2.7 116 chr3R 16734862 intergenic Ubx - chr3R 16734920 intergenic Ubx - chr3R 16734978 intergenic not near genes chr3R_6_16730001 chr3R_16730001 RAL-385 950 chr3R 17121506 17121553 chr3R 17121721 17121768 11 215 3.5 2.5 3.0 2.8 262 chr3R 17121506 intron cher - chr3R 17121637 intron,exon cher -,CG42779 + chr3R 17121768 intron,exon cher -,CG42779 + chr3R_11_17120001 chr3R_17120001 RAL-385 951 chr3R 17294665 17294701 chr3R 17295098 17295149 BS 5 444 2.0 0.0 1.0 2.5 484 chr3R 17294665 intergenic not near genes chr3R 17294907 intergenic not near genes chr3R 17295149 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-385 952 chr3R 17346693 17346709 chr3R 17348254 17348292 F-element 4 1576 4.5 1.0 2.8 1.1 1599 chr3R 17346693 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348292 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-385 953 chr3R 17497942 17497981 chr3R 17498048 17498087 5 105 3.0 4.0 3.5 1.1 145 chr3R 17497942 intron Dscam3 - chr3R 17498014 intron Dscam3 - chr3R 17498087 intron Dscam3 - chr3R_5_17495001 chr3R_17495001 RAL-385 954 chr3R 17507432 17507453 chr3R 17507530 17507551 5 95 2.5 3.5 3.0 1.2 119 chr3R 17507432 intergenic not near genes chr3R 17507492 intergenic not near genes chr3R 17507551 intergenic not near genes chr3R_5_17505001 chr3R_17505001 RAL-385 955 chr3R 17507455 17507460 chr3R 17507527 17507558 4 87 2.0 3.5 2.8 1.1 103 chr3R 17507455 intergenic not near genes chr3R 17507506 intergenic not near genes chr3R 17507558 intergenic not near genes chr3R_4_17505001 chr3R_17505001 RAL-385 956 chr3R 17638299 17638342 chr3R 17638805 17638848 roo 10 506 4.5 3.5 4.0 2.0 549 chr3R 17638299 intron CG43175 + chr3R 17638574 intron CG43175 + chr3R 17638848 intron,intron CG43175 +,CR45222 + chr3R_10_17635001 chr3R_17635001 RAL-385 957 chr3R 17766563 17766583 chr3R 17766686 17766697 7 121 4.5 2.5 3.5 1.6 134 chr3R 17766563 intergenic not near genes chr3R 17766630 intergenic not near genes chr3R 17766697 intergenic not near genes chr3R_7_17765001 chr3R_17765001 RAL-385 958 chr3R 17773359 17773390 chr3R 17773474 17773480 7 111 2.0 2.0 2.0 2.3 121 chr3R 17773359 exon CG43102 - chr3R 17773420 intron CG43102 - chr3R 17773480 exon CG43102 - chr3R_7_17770001 chr3R_17770001 RAL-385 959 chr3R 17811179 17811211 chr3R 17811279 17811305 6 99 2.5 0.0 1.2 2.7 126 chr3R 17811179 intergenic CG18012 -,tinc + chr3R 17811242 intergenic CG18012 -,tinc + chr3R 17811305 intergenic CG18012 -,tinc + chr3R_6_17810001 chr3R_17810001 RAL-385 960 chr3R 17925866 17925879 chr3R 17927322 17927366 hobo 5 1481 1.0 2.5 1.8 1.8 1500 chr3R 17925866 intron cpo + chr3R 17926616 intron cpo + chr3R 17927366 intron cpo + chr3R_5_17925001 chr3R_17925001 RAL-385 961 chr3R 18068000 18068020 chr3R 18068102 18068122 6 101 0.0 3.0 1.5 2.4 122 chr3R 18068000 intergenic not near genes chr3R 18068061 intergenic not near genes chr3R 18068122 intergenic not near genes chr3R_6_18065001 chr3R_18065001 RAL-385 962 chr3R 18143558 18143588 chr3R 18143667 18143697 7 109 2.0 7.5 4.8 1.2 139 chr3R 18143558 intergenic not near genes chr3R 18143628 intergenic not near genes chr3R 18143697 intergenic not near genes chr3R_7_18140001 chr3R_18140001 RAL-385 963 chr3R 18235196 18235244 chr3R 18235388 18235440 11 188 2.5 5.0 3.8 2.3 244 chr3R 18235196 intergenic not near genes chr3R 18235318 intergenic not near genes chr3R 18235440 intergenic not near genes chr3R_11_18235001 chr3R_18235001 RAL-385 964 chr3R 18338986 18339021 chr3R 18339110 18339144 5 124 0.5 1.5 1.0 2.5 158 chr3R 18338986 intron CG15803 - chr3R 18339065 intron CG15803 - chr3R 18339144 intron CG15803 - chr3R_5_18335001 chr3R_18335001 RAL-385 965 chr3R 18481043 18481070 chr3R 18481132 18481187 6 105 1.5 2.5 2.0 2.0 144 chr3R 18481043 intron fru - chr3R 18481115 intron fru - chr3R 18481187 intron fru - chr3R_6_18480001 chr3R_18480001 RAL-385 966 chr3R 18501578 18501617 chr3R 18501679 18501718 10 101 5.5 5.0 5.2 1.6 140 chr3R 18501578 intron fru - chr3R 18501648 intron fru - chr3R 18501718 intron fru - chr3R_10_18500001 chr3R_18500001 RAL-385 967 chr3R 18528376 18528393 chr3R 18528471 18528500 4 98 2.5 8.0 5.2 0.6 124 chr3R 18528376 intron fru - chr3R 18528438 intron fru - chr3R 18528500 intron fru - chr3R_4_18525001 chr3R_18525001 RAL-385 968 chr3R 18606493 18606534 chr3R 18610738 18610786 F-element 7 4249 2.0 2.0 2.0 2.3 4293 chr3R 18606493 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610786 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 RAL-385 969 chr3R 18695741 18695786 chr3R 18695845 18695857 4 88 0.5 0.0 0.2 3.3 116 chr3R 18695741 3` UTR CG34282 + chr3R 18695799 intergenic CG34282 + chr3R 18695857 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-385 970 chr3R 18720287 18720337 chr3R 18720403 18720404 4 98 0.5 0.5 0.5 2.7 117 chr3R 18720287 intron Cha + chr3R 18720346 intron Cha + chr3R 18720404 intron Cha + chr3R_4_18720001 chr3R_18720001 RAL-385 971 chr3R 18770276 18770307 chr3R 18770376 18770409 4 98 3.0 1.5 2.2 1.2 133 chr3R 18770276 intron CG7720 - chr3R 18770342 intron CG7720 - chr3R 18770409 intron CG7720 - chr3R_4_18770001 chr3R_18770001 RAL-385 972 chr3R 18876979 18877005 chr3R 18877062 18877062 6 86 1.5 3.5 2.5 1.7 83 chr3R 18876979 3` UTR CG14298 + chr3R 18877020 3` UTR CG14298 + chr3R 18877062 3` UTR CG14298 + chr3R_6_18875001 chr3R_18875001 RAL-385 973 chr3R 19140261 19140298 chr3R 19140729 19140766 4 458 1.0 2.0 1.5 1.6 505 chr3R 19140261 3` UTR Ppcs - chr3R 19140514 3` UTR Ppcs - chr3R 19140766 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-385 974 chr3R 19248855 19248904 chr3R 19248954 19248974 6 80 0.0 0.0 0.0 6.0 119 chr3R 19248855 intergenic not near genes chr3R 19248914 intergenic not near genes chr3R 19248974 intergenic not near genes chr3R_6_19245001 chr3R_19245001 RAL-385 975 chr3R 19340378 19340425 chr3R 19340475 19340522 7 92 1.5 1.0 1.2 3.2 144 chr3R 19340378 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340522 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-385 976 chr3R 19602778 19602779 chr3R 19602835 19602846 4 74 4.0 1.5 2.8 1.1 68 chr3R 19602778 intergenic CG7333 + chr3R 19602812 intergenic CG7333 + chr3R 19602846 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-385 977 chr3R 19628282 19628323 chr3R 19628453 19628494 5 171 0.0 2.5 1.2 2.3 212 chr3R 19628282 intron CG6231 - chr3R 19628388 intron CG6231 - chr3R 19628494 intron CG6231 - chr3R_5_19625001 chr3R_19625001 RAL-385 978 chr3R 19633273 19633298 chr3R 19633379 19633404 7 104 0.5 3.0 1.8 2.5 131 chr3R 19633273 intergenic subdued - chr3R 19633338 intergenic subdued - chr3R 19633404 intergenic subdued - chr3R_7_19630001 chr3R_19630001 RAL-385 979 chr3R 19702310 19702344 chr3R 19702408 19702444 6 96 0.5 1.5 1.0 3.0 134 chr3R 19702310 intergenic not near genes chr3R 19702377 intergenic not near genes chr3R 19702444 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-385 980 chr3R 20052083 20052130 chr3R 20052461 20052508 8 370 5.5 3.5 4.5 1.5 425 chr3R 20052083 intron CG17193 - chr3R 20052296 intron CG17193 - chr3R 20052508 intron CG17193 - chr3R_8_20050001 chr3R_20050001 RAL-385 981 chr3R 20109529 20109567 chr3R 20114755 20114792 copia 8 5223 2.5 1.0 1.8 2.9 5263 chr3R 20109529 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114792 intergenic CG10887 + chr3R_8_20110001 chr3R_20110001 RAL-385 982 chr3R 20156681 20156717 chr3R 20165870 20165887 roo 6 9186 2.5 1.5 2.0 2.0 9206 chr3R 20156681 intergenic not near genes chr3R 20161284 intergenic not near genes chr3R 20165887 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-385 983 chr3R 20222245 20222285 chr3R 20222348 20222363 5 92 0.5 3.5 2.0 1.7 118 chr3R 20222245 intron Nlg4 + chr3R 20222304 intron Nlg4 + chr3R 20222363 intron Nlg4 + chr3R_5_20220001 chr3R_20220001 RAL-385 984 chr3R 20230302 20230350 chr3R 20230402 20230453 5 102 2.5 0.5 1.5 2.0 151 chr3R 20230302 intron Nlg4 + chr3R 20230378 intron Nlg4 + chr3R 20230453 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-385 985 chr3R 20242579 20242609 chr3R 20242702 20242732 5 120 1.5 2.5 2.0 1.7 153 chr3R 20242579 intron Nlg4 + chr3R 20242656 intron Nlg4 + chr3R 20242732 intron Nlg4 + chr3R_5_20240001 chr3R_20240001 RAL-385 986 chr3R 20245278 20245294 chr3R 20248908 20248924 F-element 6 3630 0.5 0.0 0.2 5.0 3646 chr3R 20245278 3` UTR Nlg4 + chr3R 20247101 intergenic not near genes chr3R 20248924 intergenic not near genes chr3R_6_20245001 chr3R_20245001 RAL-385 987 chr3R 20252213 20252244 chr3R 20252296 20252341 8 96 4.5 0.5 2.5 2.3 128 chr3R 20252213 intergenic not near genes chr3R 20252277 intergenic cic + chr3R 20252341 intergenic cic + chr3R_8_20250001 chr3R_20250001 RAL-385 988 chr3R 20256851 20256869 chr3R 20256942 20256967 4 93 0.0 4.5 2.2 1.2 116 chr3R 20256851 intron cic + chr3R 20256909 intron cic + chr3R 20256967 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-385 989 chr3R 20308167 20308215 chr3R 20308275 20308334 8 99 2.0 0.0 1.0 4.0 167 chr3R 20308167 intergenic not near genes chr3R 20308250 intergenic not near genes chr3R 20308334 intergenic not near genes chr3R_8_20305001 chr3R_20305001 RAL-385 990 chr3R 20330978 20331024 chr3R 20331484 20331530 roo 13 501 2.5 5.0 3.8 2.7 552 chr3R 20330978 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331530 intergenic not near genes chr3R_13_20330001 chr3R_20330001 RAL-385 991 chr3R 20489013 20489045 chr3R 20489093 20489141 11 94 5.0 1.5 3.2 2.6 128 chr3R 20489013 intergenic not near genes chr3R 20489077 intergenic not near genes chr3R 20489141 intergenic not near genes chr3R_11_20485001 chr3R_20485001 RAL-385 992 chr3R 20512984 20513035 chr3R 20515707 20515758 opus 12 2722 3.0 5.0 4.0 2.4 2774 chr3R 20512984 intergenic not near genes chr3R 20514371 intergenic not near genes chr3R 20515758 intergenic not near genes chr3R_12_20510001 chr3R_20510001 RAL-385 993 chr3R 20594464 20594512 chr3R 20594574 20594621 8 109 2.5 0.0 1.2 3.6 157 chr3R 20594464 intron bon + chr3R 20594542 intron bon + chr3R 20594621 intron bon + chr3R_8_20590001 chr3R_20590001 RAL-385 994 chr3R 20596174 20596214 chr3R 20596281 20596309 8 106 1.5 3.5 2.5 2.3 135 chr3R 20596174 intron bon + chr3R 20596242 intron bon + chr3R 20596309 intron bon + chr3R_8_20595001 chr3R_20595001 RAL-385 995 chr3R 20771713 20771729 chr3R 20771785 20771789 4 76 0.5 3.0 1.8 1.4 76 chr3R 20771713 intron,intron Syp +,Takl1 - chr3R 20771751 intron,intron Syp +,Takl1 - chr3R 20771789 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-385 996 chr3R 20850066 20850107 chr3R 20850171 20850206 10 103 0.0 1.5 0.8 5.6 140 chr3R 20850066 intergenic RpS30 + chr3R 20850136 intergenic RpS30 + chr3R 20850206 intergenic RpS30 + chr3R_10_20850001 chr3R_20850001 RAL-385 997 chr3R 21020379 21020431 chr3R 21020475 21020527 14 91 2.0 3.0 2.5 4.0 148 chr3R 21020379 3` UTR Rlip + chr3R 21020453 3` UTR Rlip + chr3R 21020527 3` UTR Rlip + chr3R_14_21020001 chr3R_21020001 RAL-385 998 chr3R 21041110 21041125 chr3R 21041283 21041298 5 173 0.5 5.0 2.8 1.3 188 chr3R 21041110 exon Dhc93AB - chr3R 21041204 intron Dhc93AB - chr3R 21041298 intron Dhc93AB - chr3R_5_21040001 chr3R_21040001 RAL-385 999 chr3R 21074813 21074822 chr3R 21075042 21075063 5 237 2.0 8.5 5.2 0.8 250 chr3R 21074813 intron dmrt93B + chr3R 21074938 intron dmrt93B + chr3R 21075063 intron dmrt93B + chr3R_5_21070001 chr3R_21070001 RAL-385 1000 chr3R 21132611 21132624 chr3R 21132714 21132716 5 101 7.5 0.5 4.0 1.0 105 chr3R 21132611 3` UTR Ice2 + chr3R 21132664 3` UTR Ice2 + chr3R 21132716 3` UTR Ice2 + chr3R_5_21130001 chr3R_21130001 RAL-385 1001 chr3R 21154535 21154571 chr3R 21154753 21154806 4 226 2.5 0.0 1.2 1.8 271 chr3R 21154535 intron SNF4Agamma + chr3R 21154670 intron SNF4Agamma + chr3R 21154806 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-385 1002 chr3R 21161695 21161733 chr3R 21161915 21161936 5 210 1.5 2.0 1.8 1.8 241 chr3R 21161695 intron SNF4Agamma + chr3R 21161816 intron SNF4Agamma + chr3R 21161936 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-385 1003 chr3R 21163254 21163272 chr3R 21163334 21163360 5 87 3.0 2.0 2.5 1.4 106 chr3R 21163254 intron SNF4Agamma + chr3R 21163307 intron SNF4Agamma + chr3R 21163360 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-385 1004 chr3R 21502940 21502984 chr3R 21503106 21503145 8 163 3.5 0.5 2.0 2.7 205 chr3R 21502940 intron C15 + chr3R 21503042 intron C15 + chr3R 21503145 intron C15 + chr3R_8_21500001 chr3R_21500001 RAL-385 1005 chr3R 21519969 21520129 chr3R 21520090 21520243 12 115 0.5 0.5 0.5 8.0 274 chr3R 21519969 intergenic not near genes chr3R 21520106 intergenic not near genes chr3R 21520243 intergenic not near genes chr3R_12_21520001 chr3R_21520001 RAL-385 1006 chr3R 21658711 21658748 chr3R 21658947 21658972 5 235 0.0 1.0 0.5 3.3 261 chr3R 21658711 intron E2f - chr3R 21658842 intron E2f - chr3R 21658972 intron E2f - chr3R_5_21655001 chr3R_21655001 RAL-385 1007 chr3R 21663780 21663810 chr3R 21663885 21663917 4 98 1.5 4.0 2.8 1.1 137 chr3R 21663780 intergenic not near genes chr3R 21663848 intergenic not near genes chr3R 21663917 intergenic CG15497 + chr3R_4_21660001 chr3R_21660001 RAL-385 1008 chr3R 21672719 21672733 chr3R 21672819 21672843 4 107 5.0 4.0 4.5 0.7 124 chr3R 21672719 3` UTR CG31176 - chr3R 21672781 3` UTR CG31176 - chr3R 21672843 3` UTR CG31176 - chr3R_4_21670001 chr3R_21670001 RAL-385 1009 chr3R 21761125 21761152 chr3R 21768513 21768550 mdg1 5 7400 1.5 1.5 1.5 2.0 7425 chr3R 21761125 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768550 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-385 1010 chr3R 21784863 21784885 chr3R 21784965 21784982 6 100 0.5 2.0 1.2 2.7 119 chr3R 21784863 3` UTR,3` UTR CASK -,CRG - chr3R 21784922 3` UTR,3` UTR CASK -,CRG - chr3R 21784982 3` UTR,3` UTR CASK -,CRG - chr3R_6_21780001 chr3R_21780001 RAL-385 1011 chr3R 21907534 21907534 chr3R 26659332 26659337 5 4751801 10.0 3.0 6.5 0.7 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-385 1012 chr3R 21907534 21907534 chr3R 28831801 28831802 5 6924268 10.0 2.5 6.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-385 1013 chr3R 21907535 21907535 chr3R 28831802 28831802 5 6924267 10.0 2.0 6.0 0.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-385 1014 chr3R 21907536 21907536 chr3R 28831801 28831802 11 6924266 10.0 2.5 6.2 1.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-385 1015 chr3R 21937212 21937234 chr3R 21937309 21937330 7 96 0.5 4.0 2.2 2.2 118 chr3R 21937212 intergenic not near genes chr3R 21937271 intergenic not near genes chr3R 21937330 intergenic not near genes chr3R_7_21935001 chr3R_21935001 RAL-385 1016 chr3R 22234671 22234711 chr3R 22236010 22236042 pogo 5 1332 2.0 0.0 1.0 2.5 1371 chr3R 22234671 intron SKIP + chr3R 22235356 intron SKIP + chr3R 22236042 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-385 1017 chr3R 22572256 22572270 chr3R 22572347 22572378 4 104 2.0 0.5 1.2 1.8 122 chr3R 22572256 intron CG33110 + chr3R 22572317 intron CG33110 + chr3R 22572378 intron CG33110 + chr3R_4_22570001 chr3R_22570001 RAL-385 1018 chr3R 22769086 22769125 chr3R 22769167 22769207 5 80 3.0 1.5 2.2 1.6 121 chr3R 22769086 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769207 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_5_22765001 chr3R_22765001 RAL-385 1019 chr3R 22794515 22794541 chr3R 22794585 22794593 5 79 1.0 0.0 0.5 3.3 78 chr3R 22794515 intergenic CG7029 + chr3R 22794554 intergenic not near genes chr3R 22794593 intergenic not near genes chr3R_5_22790001 chr3R_22790001 RAL-385 1020 chr3R 22822502 22822520 chr3R 22822615 22822628 4 112 3.0 3.0 3.0 1.0 126 chr3R 22822502 intergenic not near genes chr3R 22822565 intergenic not near genes chr3R 22822628 intergenic not near genes chr3R_4_22820001 chr3R_22820001 RAL-385 1021 chr3R 22880933 22880952 chr3R 22881091 22881110 7 158 2.5 2.5 2.5 2.0 177 chr3R 22880933 intergenic not near genes chr3R 22881022 intergenic not near genes chr3R 22881110 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-385 1022 chr3R 22953817 22953859 chr3R 22954481 22954511 7 663 0.5 0.0 0.2 5.8 694 chr3R 22953817 intron klg + chr3R 22954164 intron klg + chr3R 22954511 intron klg + chr3R_7_22950001 chr3R_22950001 RAL-385 1023 chr3R 23064164 23064181 chr3R 23064284 23064305 5 123 2.0 2.0 2.0 1.7 141 chr3R 23064164 exon CG17111 - chr3R 23064234 intron CG17111 - chr3R 23064305 exon CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-385 1024 chr3R 23064831 23064885 chr3R 23064954 23064998 7 111 0.0 4.5 2.2 2.2 167 chr3R 23064831 intron CG17111 - chr3R 23064914 intron CG17111 - chr3R 23064998 intron CG17111 - chr3R_7_23060001 chr3R_23060001 RAL-385 1025 chr3R 23070652 23070698 chr3R 23070743 23070795 6 99 0.0 0.0 0.0 6.0 143 chr3R 23070652 3` UTR CG13830 - chr3R 23070724 3` UTR CG13830 - chr3R 23070795 3` UTR CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-385 1026 chr3R 23071098 23071149 chr3R 23071197 23071232 5 93 1.5 2.5 2.0 1.7 134 chr3R 23071098 3` UTR CG13830 - chr3R 23071165 3` UTR CG13830 - chr3R 23071232 3` UTR CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-385 1027 chr3R 23182473 23182649 chr3R 23182610 23182758 11 127 0.0 0.0 0.0 11.0 285 chr3R 23182473 intron Irk1 + chr3R 23182616 intron Irk1 + chr3R 23182758 intron Irk1 + chr3R_11_23180001 chr3R_23180001 RAL-385 1028 chr3R 23197943 23197969 chr3R 23198042 23198067 8 97 6.0 2.0 4.0 1.6 124 chr3R 23197943 exon cnc - chr3R 23198005 intron cnc - chr3R 23198067 intron cnc - chr3R_8_23195001 chr3R_23195001 RAL-385 1029 chr3R 23335443 23335453 chr3R 23335511 23335551 4 90 0.5 3.5 2.0 1.3 108 chr3R 23335443 intron pnt - chr3R 23335497 intron pnt - chr3R 23335551 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-385 1030 chr3R 23558382 23558405 chr3R 23560183 23560206 Bari1 7 1798 4.5 1.0 2.8 1.8 1824 chr3R 23558382 intron beat-IV + chr3R 23559294 intron beat-IV + chr3R 23560206 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-385 1031 chr3R 23865021 23865065 chr3R 23865125 23865138 7 102 1.0 3.0 2.0 2.3 117 chr3R 23865021 intron Pli - chr3R 23865080 intron Pli - chr3R 23865138 intron Pli - chr3R_7_23865001 chr3R_23865001 RAL-385 1032 chr3R 23888066 23888112 chr3R 23888172 23888218 8 105 2.5 1.5 2.0 2.7 152 chr3R 23888066 intron Pli - chr3R 23888142 intron Pli - chr3R 23888218 intron Pli - chr3R_8_23885001 chr3R_23885001 RAL-385 1033 chr3R 23949022 23949067 chr3R 23949119 23949164 6 88 2.0 3.0 2.5 1.7 142 chr3R 23949022 intergenic not near genes chr3R 23949093 intergenic not near genes chr3R 23949164 intergenic not near genes chr3R_6_23945001 chr3R_23945001 RAL-385 1034 chr3R 24014769 24014806 chr3R 24014862 24014911 8 103 1.0 0.5 0.8 4.4 142 chr3R 24014769 intron KrT95D - chr3R 24014840 intron KrT95D - chr3R 24014911 intron KrT95D - chr3R_8_24010001 chr3R_24010001 RAL-385 1035 chr3R 24021606 24021654 chr3R 24021716 24021764 5 107 0.5 2.0 1.2 2.3 158 chr3R 24021606 intron KrT95D - chr3R 24021685 intron KrT95D - chr3R 24021764 intron KrT95D - chr3R_5_24020001 chr3R_24020001 RAL-385 1036 chr3R 24207205 24207239 chr3R 24212302 24212326 flea 5 5092 1.0 6.0 3.5 1.1 5121 chr3R 24207205 intron twin - chr3R 24209766 intron twin - chr3R 24212326 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-385 1037 chr3R 24431583 24431606 chr3R 24431681 24431705 7 99 4.5 0.0 2.2 2.2 122 chr3R 24431583 intron nAChRalpha1 - chr3R 24431644 intron nAChRalpha1 - chr3R 24431705 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-385 1038 chr3R 24493269 24493308 chr3R 24493518 24493557 BS 5 249 1.0 5.5 3.2 1.2 288 chr3R 24493269 intergenic not near genes chr3R 24493413 intergenic not near genes chr3R 24493557 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-385 1039 chr3R 24527802 24527819 chr3R 24527913 24527930 5 110 4.0 3.0 3.5 1.1 128 chr3R 24527802 intergenic CG6607 +,CG13618 + chr3R 24527866 intergenic CG6607 +,CG13618 + chr3R 24527930 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-385 1040 chr3R 24635627 24635668 chr3R 24635733 24635773 11 104 7.5 4.0 5.8 1.6 146 chr3R 24635627 3` UTR puf - chr3R 24635700 3` UTR puf - chr3R 24635773 3` UTR puf - chr3R_11_24635001 chr3R_24635001 RAL-385 1041 chr3R 24667588 24667628 chr3R 24667685 24667694 7 86 1.5 0.5 1.0 3.5 106 chr3R 24667588 intron slo + chr3R 24667641 intron slo + chr3R 24667694 intron slo + chr3R_7_24665001 chr3R_24665001 RAL-385 1042 chr3R 24842127 24842135 chr3R 24842210 24842224 4 89 0.5 1.5 1.0 2.0 97 chr3R 24842127 5` UTR Esp + chr3R 24842176 5` UTR Esp + chr3R 24842224 5` UTR Esp + chr3R_4_24840001 chr3R_24840001 RAL-385 1043 chr3R 24912459 24912513 chr3R 24912561 24912615 8 100 1.0 2.0 1.5 3.2 156 chr3R 24912459 intergenic not near genes chr3R 24912537 intergenic CR44267 + chr3R 24912615 intergenic CR44267 + chr3R_8_24910001 chr3R_24910001 RAL-385 1044 chr3R 25053103 25053157 chr3R 25053222 25053222 4 91 0.0 7.0 3.5 0.9 119 chr3R 25053103 intergenic CG11791 +,CG31109 - chr3R 25053162 intergenic CG11791 +,CG31109 - chr3R 25053222 intergenic CG31109 -,CG11791 + chr3R_4_25050001 chr3R_25050001 RAL-385 1045 chr3R 25072750 25072787 chr3R 25072857 25072899 12 109 2.5 2.0 2.2 3.8 149 chr3R 25072750 3` UTR CG9996 - chr3R 25072824 3` UTR CG9996 - chr3R 25072899 exon CG9996 - chr3R_12_25070001 chr3R_25070001 RAL-385 1046 chr3R 25166243 25166365 chr3R 25166333 25166450 6 91 0.0 0.0 0.0 6.0 207 chr3R 25166243 intergenic not near genes chr3R 25166346 intergenic not near genes chr3R 25166450 intergenic not near genes chr3R_6_25165001 chr3R_25165001 RAL-385 1047 chr3R 25209582 25209618 chr3R 25209680 25209720 6 99 1.0 1.0 1.0 3.0 138 chr3R 25209582 intron CG13654 + chr3R 25209651 intron CG13654 + chr3R 25209720 intron CG13654 + chr3R_6_25205001 chr3R_25205001 RAL-385 1048 chr3R 7773344 7773344 chr3R 25538123 25538125 14 17764780 8.5 5.5 7.0 1.8 17764781 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538125 intron msi + chr3R_14_16655001 chr3R_16655001 RAL-385 1049 chr3R 25642573 25642624 chr3R 25642684 25642719 8 103 1.5 3.5 2.5 2.3 146 chr3R 25642573 intron jigr1 + chr3R 25642646 intron jigr1 + chr3R 25642719 intron jigr1 + chr3R_8_25640001 chr3R_25640001 RAL-385 1050 chr3R 25652295 25652348 chr3R 25652392 25652399 11 89 1.0 3.0 2.0 3.7 104 chr3R 25652295 intergenic not near genes chr3R 25652347 intergenic not near genes chr3R 25652399 intergenic not near genes chr3R_11_25650001 chr3R_25650001 RAL-385 1051 chr3R 25669054 25669074 chr3R 25669158 25669188 4 111 5.5 0.0 2.8 1.1 134 chr3R 25669054 intron Lgr3 + chr3R 25669121 intron Lgr3 + chr3R 25669188 intron Lgr3 + chr3R_4_25665001 chr3R_25665001 RAL-385 1052 chr3R 25687504 25687513 chr3R 25687902 25687905 4 396 3.5 3.0 3.2 1.0 401 chr3R 25687504 intergenic CLS - chr3R 25687704 intergenic CLS - chr3R 25687905 intergenic not near genes chr3R_4_25685001 chr3R_25685001 RAL-385 1053 chr3R 25725807 25725859 chr3R 25734987 25735039 roo 8 9174 1.0 0.0 0.5 5.3 9232 chr3R 25725807 intron LpR2 - chr3R 25730423 intron LpR2 - chr3R 25735039 intron LpR2 - chr3R_8_25730001 chr3R_25730001 RAL-385 1054 chr3R 25843618 25843668 chr3R 25843768 25843817 4 149 2.0 3.5 2.8 1.1 199 chr3R 25843618 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843817 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-385 1055 chr3R 26060419 26060430 chr3R 26060493 26060523 5 95 2.0 1.0 1.5 2.0 104 chr3R 26060419 intron CG14544 + chr3R 26060471 intron CG14544 + chr3R 26060523 intron CG14544 + chr3R_5_26060001 chr3R_26060001 RAL-385 1056 chr3R 26122448 26122473 chr3R 26122544 26122569 4 95 3.0 2.0 2.5 1.1 121 chr3R 26122448 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122569 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-385 1057 chr3R 26202391 26202406 chr3R 26202509 26202551 4 141 1.5 1.5 1.5 1.6 160 chr3R 26202391 intron CR44320 + chr3R 26202471 intron CR44320 + chr3R 26202551 intron CR44320 + chr3R_4_26200001 chr3R_26200001 RAL-385 1058 chr3R 26239823 26239854 chr3R 26240138 26240157 8 325 1.5 3.0 2.2 2.5 334 chr3R 26239823 intron CR42745 + chr3R 26239990 intron CR42745 + chr3R 26240157 intron CR42745 + chr3R_8_26235001 chr3R_26235001 RAL-385 1059 chr3R 26292091 26292124 chr3R 26292191 26292224 7 100 4.0 2.5 3.2 1.7 133 chr3R 26292091 intergenic not near genes chr3R 26292158 intergenic not near genes chr3R 26292224 intergenic not near genes chr3R_7_26290001 chr3R_26290001 RAL-385 1060 chr3R 26294714 26294727 chr3R 26294807 26294825 4 97 1.0 1.0 1.0 2.0 111 chr3R 26294714 intergenic not near genes chr3R 26294770 intergenic not near genes chr3R 26294825 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-385 1061 chr3R 26294735 26294750 chr3R 26294799 26294848 8 90 0.5 1.0 0.8 4.4 113 chr3R 26294735 intergenic not near genes chr3R 26294792 intergenic not near genes chr3R 26294848 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-385 1062 chr3R 26319314 26319345 chr3R 26319411 26319454 6 108 2.0 2.0 2.0 2.0 140 chr3R 26319314 intron CG33970 + chr3R 26319384 intron CG33970 + chr3R 26319454 intron CG33970 + chr3R_6_26315001 chr3R_26315001 RAL-385 1063 chr3R 26332877 26332911 chr3R 26332971 26332991 4 92 1.5 1.0 1.2 1.8 114 chr3R 26332877 intron CG33970 + chr3R 26332934 intron CG33970 + chr3R 26332991 intron CG33970 + chr3R_4_26330001 chr3R_26330001 RAL-385 1064 chr3R 26527073 26527124 chr3R 26527176 26527217 7 94 3.0 2.5 2.8 1.8 144 chr3R 26527073 intron plum - chr3R 26527145 intron plum - chr3R 26527217 intron plum - chr3R_7_26525001 chr3R_26525001 RAL-385 1065 chr3R 26540980 26541032 chr3R 26541079 26541115 7 96 0.5 1.0 0.8 3.9 135 chr3R 26540980 intron scrib + chr3R 26541048 intron scrib + chr3R 26541115 intron scrib + chr3R_7_26540001 chr3R_26540001 RAL-385 1066 chr3R 26607738 26607768 chr3R 26607828 26607859 5 91 3.0 5.5 4.2 1.0 121 chr3R 26607738 5` UTR CR44951 + chr3R 26607798 5` UTR CR44951 + chr3R 26607859 5` UTR CR44951 + chr3R_5_26605001 chr3R_26605001 RAL-385 1067 chr3R 22081601 22081601 chr3R 26855366 26855366 4 4773765 4.5 8.5 6.5 0.5 4773765 chr3R 22081601 intron CG13408 + chr3R 24468484 intergenic not near genes chr3R 26855366 intron Lerp - chr3R_4_24465001 chr3R_24465001 RAL-385 1068 chr3R 27007398 27007419 chr3R 27016551 27016571 roo 4 9148 4.0 3.0 3.5 0.9 9173 chr3R 27007398 intron RYa-R + chr3R 27011984 intron RYa-R + chr3R 27016571 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-385 1069 chr3R 27028705 27028752 chr3R 27028804 27028851 9 99 2.5 1.0 1.8 3.2 146 chr3R 27028705 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028851 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-385 1070 chr3R 27140528 27140545 chr3R 27148148 27148175 412 5 7627 1.0 6.5 3.8 1.0 7647 chr3R 27140528 intron CG6051 - chr3R 27144352 intron CG6051 - chr3R 27148175 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-385 1071 chr3R 27315992 27316011 chr3R 27316073 27316107 7 90 4.0 1.5 2.8 1.8 115 chr3R 27315992 intron CG3339 - chr3R 27316050 intron CG3339 - chr3R 27316107 exon CG3339 - chr3R_7_27315001 chr3R_27315001 RAL-385 1072 chr3R 27329456 27329498 chr3R 27329553 27329591 6 91 1.0 2.0 1.5 2.4 135 chr3R 27329456 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329591 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-385 1073 chr3R 27342777 27342824 chr3R 27351378 27351424 Tirant 8 8596 1.0 2.5 1.8 2.9 8647 chr3R 27342777 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351424 intron CG42534 + chr3R_8_27345001 chr3R_27345001 RAL-385 1074 chr3R 27452576 27452607 chr3R 27452776 27452805 7 200 1.5 4.5 3.0 1.8 229 chr3R 27452576 intergenic not near genes chr3R 27452690 intergenic not near genes chr3R 27452805 intergenic not near genes chr3R_7_27450001 chr3R_27450001 RAL-385 1075 chr3R 27511228 27511263 chr3R 27511335 27511370 4 106 3.5 1.0 2.2 1.2 142 chr3R 27511228 intergenic not near genes chr3R 27511299 intergenic not near genes chr3R 27511370 intergenic not near genes chr3R_4_27510001 chr3R_27510001 RAL-385 1076 chr3R 27521136 27521174 chr3R 27530364 27530403 roo 8 9228 4.0 2.5 3.2 1.9 9267 chr3R 27521136 intron CG12885 + chr3R 27525770 intron CG12885 + chr3R 27530403 intron CG12885 + chr3R_8_27525001 chr3R_27525001 RAL-385 1077 chr3R 27573473 27573510 chr3R 27573626 27573663 5 151 1.0 2.0 1.5 2.0 190 chr3R 27573473 intron wdb - chr3R 27573568 intron wdb - chr3R 27573663 intron wdb - chr3R_5_27570001 chr3R_27570001 RAL-385 1078 chr3R 27595044 27595076 chr3R 27595147 27595179 7 100 3.5 3.0 3.2 1.7 135 chr3R 27595044 intron CG5639 - chr3R 27595112 intron CG5639 - chr3R 27595179 intron CG5639 - chr3R_7_27595001 chr3R_27595001 RAL-385 1079 chr3R 27705365 27705390 chr3R 27705439 27705451 4 72 1.5 2.5 2.0 1.3 86 chr3R 27705365 exon CG12428 - chr3R 27705408 intron CG12428 - chr3R 27705451 intron CG12428 - chr3R_4_27705001 chr3R_27705001 RAL-385 1080 chr3R 27718557 27718581 chr3R 27718655 27718658 6 92 2.5 0.5 1.5 2.4 101 chr3R 27718557 intergenic not near genes chr3R 27718608 intergenic not near genes chr3R 27718658 intergenic not near genes chr3R_6_27715001 chr3R_27715001 RAL-385 1081 chr3R 27725534 27725600 chr3R 27731015 27731043 I-element 4 5461 0.0 0.0 0.0 4.0 5509 chr3R 27725534 intergenic not near genes chr3R 27728288 intergenic not near genes chr3R 27731043 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-385 1082 chr3R 27759297 27759323 chr3R 27759371 27759371 4 68 0.0 0.0 0.0 4.0 74 chr3R 27759297 intergenic not near genes chr3R 27759334 intergenic not near genes chr3R 27759371 intergenic not near genes chr3R_4_27755001 chr3R_27755001 RAL-385 1083 chr3R 27875695 27875729 chr3R 27882755 27882797 297 7 7070 2.0 1.0 1.5 2.8 7102 chr3R 27875695 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882797 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-385 1084 chr3R 27970817 27970838 chr3R 27970927 27970933 4 106 7.0 1.5 4.2 0.8 116 chr3R 27970817 intron betaTub97EF - chr3R 27970875 intron betaTub97EF - chr3R 27970933 intron betaTub97EF - chr3R_4_27970001 chr3R_27970001 RAL-385 1085 chr3R 27973840 27973881 chr3R 27973936 27973982 11 96 2.0 3.0 2.5 3.1 142 chr3R 27973840 intron betaTub97EF - chr3R 27973911 intron betaTub97EF - chr3R 27973982 intron betaTub97EF - chr3R_11_27970001 chr3R_27970001 RAL-385 1086 chr3R 28032616 28032663 chr3R 28032765 28032812 9 146 2.0 2.0 2.0 3.0 196 chr3R 28032616 intron CG34362 + chr3R 28032714 intron CG34362 + chr3R 28032812 intron CG34362 + chr3R_9_28030001 chr3R_28030001 RAL-385 1087 chr3R 28054455 28054468 chr3R 28054523 28054555 4 79 2.0 1.5 1.8 1.4 100 chr3R 28054455 intron CG34362 + chr3R 28054505 intron CG34362 + chr3R 28054555 intron CG34362 + chr3R_4_28050001 chr3R_28050001 RAL-385 1088 chr3R 28173655 28173704 chr3R 28181105 28181154 mdg1 9 7444 2.0 4.5 3.2 2.1 7499 chr3R 28173655 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181154 intron CG34354 + chr3R_9_28175001 chr3R_28175001 RAL-385 1089 chr3R 28253342 28253366 chr3R 28255857 28255859 jockey 4 2511 1.5 2.0 1.8 1.4 2517 chr3R 28253342 intergenic not near genes chr3R 28254600 intergenic not near genes chr3R 28255859 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-385 1090 chr3R 28282969 28283017 chr3R 28283618 28283623 15 641 3.5 4.5 4.0 3.0 654 chr3R 28282969 exon CG34436 + chr3R 28283296 exon CG34436 + chr3R 28283623 intergenic CG34436 +,CG34437 + chr3R_15_28280001 chr3R_28280001 RAL-385 1091 chr3R 28302087 28302113 chr3R 28302549 28302575 jockey 10 460 3.0 4.5 3.8 2.1 488 chr3R 28302087 intergenic not near genes chr3R 28302331 intergenic not near genes chr3R 28302575 intergenic not near genes chr3R_10_28300001 chr3R_28300001 RAL-385 1092 chr3R 28345628 28345675 chr3R 28345724 28345771 10 93 4.0 1.5 2.8 2.6 143 chr3R 28345628 intergenic Moca-cyp + chr3R 28345700 intergenic not near genes chr3R 28345771 intergenic not near genes chr3R_10_28345001 chr3R_28345001 RAL-385 1093 chr3R 28393690 28393730 chr3R 28393810 28393850 11 120 1.0 2.0 1.5 4.4 160 chr3R 28393690 intergenic not near genes chr3R 28393770 intergenic not near genes chr3R 28393850 intergenic not near genes chr3R_11_28390001 chr3R_28390001 RAL-385 1094 chr3R 28407700 28407736 chr3R 28407795 28407842 4 102 1.0 1.0 1.0 2.0 142 chr3R 28407700 intergenic not near genes chr3R 28407771 intergenic not near genes chr3R 28407842 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-385 1095 chr3R 28484357 28484394 chr3R 28486254 28486292 9 1911 23.5 28.0 25.8 0.3 1935 chr3R 28484357 intergenic CG1894 + chr3R 28485324 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_9_28485001 chr3R_28485001 RAL-385 1096 chr3R 28616459 28616501 chr3R 28616573 28616585 10 109 0.0 3.0 1.5 4.0 126 chr3R 28616459 intron CG10011 - chr3R 28616522 intron CG10011 - chr3R 28616585 intron CG10011 - chr3R_10_28615001 chr3R_28615001 RAL-385 1097 chr3R 28717020 28717038 chr3R 28717095 28717108 5 76 4.5 1.5 3.0 1.2 88 chr3R 28717020 intron htt + chr3R 28717064 intron htt + chr3R 28717108 intron htt + chr3R_5_28715001 chr3R_28715001 RAL-385 1098 chr3R 28742482 28742510 chr3R 28742563 28742572 5 85 1.0 1.5 1.2 2.3 90 chr3R 28742482 intron AstA-R2 - chr3R 28742527 intron AstA-R2 - chr3R 28742572 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-385 1099 chr3R 28775001 28775033 chr3R 28775160 28775192 4 159 3.0 0.0 1.5 1.6 191 chr3R 28775001 intergenic not near genes chr3R 28775096 intergenic not near genes chr3R 28775192 intergenic not near genes chr3R_4_28775001 chr3R_28775001 RAL-385 1100 chr3R 28811565 28811598 chr3R 28811717 28811764 12 161 4.5 3.5 4.0 2.4 199 chr3R 28811565 intergenic wdn - chr3R 28811664 intergenic wdn -,CG1646 + chr3R 28811764 intergenic CG1646 +,wdn - chr3R_12_28810001 chr3R_28810001 RAL-385 1101 chr3R 28830882 28830917 chr3R 28830965 28831009 6 85 2.5 2.0 2.2 1.9 127 chr3R 28830882 intron WASp - chr3R 28830946 intron WASp - chr3R 28831009 intron WASp - chr3R_6_28830001 chr3R_28830001 RAL-385 1102 chr3R 21907535 21907536 chr3R 28831801 28831801 8 6924266 10.0 2.5 6.2 1.1 6924266 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_8_25365001 chr3R_25365001 RAL-385 1103 chr3R 21907534 21907536 chr3R 28831802 28831802 13 6924267 10.0 2.0 6.0 1.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-385 1104 chr3R 28922748 28922773 chr3R 28922844 28922864 8 95 3.5 0.0 1.8 2.9 116 chr3R 28922748 3` UTR Doa + chr3R 28922806 intergenic Doa +,CG11828 + chr3R 28922864 intergenic Doa +,CG11828 + chr3R_8_28920001 chr3R_28920001 RAL-385 1105 chr3R 28960491 28960534 chr3R 28960595 28960639 6 104 1.5 1.5 1.5 2.4 148 chr3R 28960491 intron CG14521 - chr3R 28960565 intron CG14521 - chr3R 28960639 intron CG14521 - chr3R_6_28960001 chr3R_28960001 RAL-385 1106 chr3R 29032728 29032775 chr3R 29032825 29032859 5 86 2.5 1.0 1.8 1.8 131 chr3R 29032728 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032794 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032859 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-385 1107 chr3R 29053743 29053769 chr3R 29054273 29054297 6 528 0.5 5.0 2.8 1.6 554 chr3R 29053743 exon CG11842 + chr3R 29054020 intergenic CG11842 +,CG11843 + chr3R 29054297 intergenic CG11843 +,CG11842 + chr3R_6_29050001 chr3R_29050001 RAL-385 1108 chr3R 29059356 29059403 chr3R 29059465 29059518 4 110 1.5 3.0 2.2 1.2 162 chr3R 29059356 3` UTR Cul5 - chr3R 29059437 3` UTR Cul5 - chr3R 29059518 3` UTR Cul5 - chr3R_4_29055001 chr3R_29055001 RAL-385 1109 chr3R 29141527 29141579 chr3R 29141626 29141678 7 96 0.5 2.5 1.5 2.8 151 chr3R 29141527 intron CG14516 + chr3R 29141602 intron CG14516 + chr3R 29141678 intron CG14516 + chr3R_7_29140001 chr3R_29140001 RAL-385 1110 chr3R 29319802 29319854 chr3R 29320141 29320147 jockey 12 335 1.5 0.5 1.0 6.0 345 chr3R 29319802 intergenic Cnx99A - chr3R 29319974 intergenic Cnx99A - chr3R 29320147 intergenic not near genes chr3R_12_29315001 chr3R_29315001 RAL-385 1111 chr3R 29406620 29406645 chr3R 29407894 29407943 jockey 5 1288 1.5 2.5 2.0 1.7 1323 chr3R 29406620 intron Ptp99A + chr3R 29407282 intron Ptp99A + chr3R 29407943 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-385 1112 chr3R 29449343 29449390 chr3R 29449441 29449488 9 91 1.0 3.5 2.2 2.8 145 chr3R 29449343 intron Ptp99A + chr3R 29449416 intron Ptp99A + chr3R 29449488 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-385 1113 chr3R 29505876 29505924 chr3R 29505973 29506021 4 90 1.5 2.0 1.8 1.4 145 chr3R 29505876 intergenic not near genes chr3R 29505948 intergenic not near genes chr3R 29506021 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-385 1114 chr3R 29624945 29624990 chr3R 29625030 29625064 4 86 1.5 2.0 1.8 1.4 119 chr3R 29624945 intergenic not near genes chr3R 29625004 intergenic not near genes chr3R 29625064 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-385 1115 chr3R 29642495 29642530 chr3R 29642592 29642626 6 96 1.0 1.0 1.0 3.0 131 chr3R 29642495 intron Dop1R2 - chr3R 29642560 intron Dop1R2 - chr3R 29642626 intron Dop1R2 - chr3R_6_29640001 chr3R_29640001 RAL-385 1116 chr3R 29645816 29645856 chr3R 29645917 29645956 5 100 0.5 3.0 1.8 1.8 140 chr3R 29645816 intron Dop1R2 - chr3R 29645886 intron Dop1R2 - chr3R 29645956 intron Dop1R2 - chr3R_5_29645001 chr3R_29645001 RAL-385 1117 chr3R 29738244 29738275 chr3R 29739731 29739762 hobo 10 1484 3.0 1.5 2.2 3.1 1518 chr3R 29738244 intergenic CG1969 +,CG7598 + chr3R 29739003 intron CG1969 + chr3R 29739762 5` UTR CG1969 + chr3R_10_29735001 chr3R_29735001 RAL-385 1118 chr3R 29760349 29760381 chr3R 29761570 29761602 pogo 6 1221 3.0 2.5 2.8 1.6 1253 chr3R 29760349 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761602 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-385 1119 chr3R 29882007 29882053 chr3R 29891184 29891229 roo 12 9173 2.0 3.0 2.5 3.4 9222 chr3R 29882007 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891229 intron CG31038 + chr3R_12_29885001 chr3R_29885001 RAL-385 1120 chr3R 29963473 29963512 chr3R 29963593 29963634 6 116 0.5 2.0 1.2 2.7 161 chr3R 29963473 intron TkR99D - chr3R 29963554 intron TkR99D - chr3R 29963634 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-385 1121 chr3R 30032169 30032193 chr3R 30032240 30032246 5 67 1.0 2.0 1.5 2.0 77 chr3R 30032169 intron Axn + chr3R 30032208 intron Axn + chr3R 30032246 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-385 1122 chr3R 30112936 30112986 chr3R 30113032 30113082 7 88 1.0 1.5 1.2 3.2 146 chr3R 30112936 intron sima + chr3R 30113009 intron sima + chr3R 30113082 intron sima + chr3R_7_30110001 chr3R_30110001 RAL-385 1123 chr3R 30182756 30182784 chr3R 30182895 30182939 8 150 2.5 2.5 2.5 2.3 183 chr3R 30182756 intergenic not near genes chr3R 30182848 intergenic not near genes chr3R 30182939 intergenic not near genes chr3R_8_30180001 chr3R_30180001 RAL-385 1124 chr3R 30238754 30238792 chr3R 30239938 30239976 1360 9 1184 3.5 2.5 3.0 2.2 1222 chr3R 30238754 intergenic not near genes chr3R 30239365 intergenic not near genes chr3R 30239976 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-385 1125 chr3R 30396205 30396249 chr3R 30404488 30404534 roo 7 8285 2.0 1.5 1.8 2.5 8329 chr3R 30396205 intergenic not near genes chr3R 30400370 intergenic not near genes chr3R 30404534 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-385 1126 chr3R 30461474 30461514 chr3R 30461611 30461625 7 129 2.5 3.0 2.8 1.8 151 chr3R 30461474 intron CDase + chr3R 30461550 intron CDase + chr3R 30461625 intron CDase + chr3R_7_30460001 chr3R_30460001 RAL-385 1127 chr3R 30485037 30485070 chr3R 30485133 30485166 7 95 2.0 2.0 2.0 2.3 129 chr3R 30485037 intron PH4alphaEFB + chr3R 30485102 intron PH4alphaEFB + chr3R 30485166 intron PH4alphaEFB + chr3R_7_30485001 chr3R_30485001 RAL-385 1128 chr3R 30488103 30488117 chr3R 30488202 30488216 5 98 4.5 0.0 2.2 1.6 113 chr3R 30488103 intergenic Jon99Fii - chr3R 30488160 intergenic Jon99Fii - chr3R 30488216 intergenic Jon99Fii - chr3R_5_30485001 chr3R_30485001 RAL-385 1129 chr3R 30627595 30627628 chr3R 30627683 30627688 4 87 2.0 0.0 1.0 2.0 93 chr3R 30627595 3` UTR CG2267 - chr3R 30627642 exon CG2267 - chr3R 30627688 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-385 1130 chr3R 30818803 30818832 chr3R 30820388 30820391 1360 5 1580 2.0 3.0 2.5 1.4 1588 chr3R 30818803 intron cindr + chr3R 30819597 intron cindr + chr3R 30820391 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-385 1131 chr3R 30859401 30859424 chr3R 30859484 30859517 7 94 1.0 0.0 0.5 4.7 116 chr3R 30859401 intergenic not near genes chr3R 30859459 intergenic not near genes chr3R 30859517 intergenic not near genes chr3R_7_30855001 chr3R_30855001 RAL-385 1132 chr3R 30901413 30901458 chr3R 30901940 30901985 13 525 5.5 5.0 5.2 2.1 572 chr3R 30901413 intron CG33483 - chr3R 30901699 intron CG33483 - chr3R 30901985 exon CG33483 - chr3R_13_30900001 chr3R_30900001 RAL-385 1133 chr3R 30973134 30973157 chr3R 30973301 30973338 5 177 3.5 1.5 2.5 1.4 204 chr3R 30973134 intron 5-HT7 - chr3R 30973236 intron 5-HT7 - chr3R 30973338 intron 5-HT7 - chr3R_5_30970001 chr3R_30970001 RAL-385 1134 chr3R 30985666 30985716 chr3R 30985771 30985821 10 104 1.5 4.0 2.8 2.6 155 chr3R 30985666 intron 5-HT7 - chr3R 30985744 intron 5-HT7 - chr3R 30985821 intron 5-HT7 - chr3R_10_30985001 chr3R_30985001 RAL-385 1135 chr3R 31047193 31047248 chr3R 31047507 31047562 7 312 0.5 3.0 1.8 2.5 369 chr3R 31047193 intergenic CanA1 + chr3R 31047378 intergenic not near genes chr3R 31047562 intergenic not near genes chr3R_7_31045001 chr3R_31045001 RAL-385 1136 chr3R 31084896 31084935 chr3R 31084992 31085031 5 94 1.0 3.5 2.2 1.6 135 chr3R 31084896 intergenic not near genes chr3R 31084964 intergenic not near genes chr3R 31085031 intergenic not near genes chr3R_5_31080001 chr3R_31080001 RAL-385 1137 chr3R 31279362 31279386 chr3R 31285563 31285597 diver 4 6202 2.5 0.5 1.5 1.6 6235 chr3R 31279362 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285597 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-385 1138 chr3R 31320144 31320194 chr3R 31320259 31320309 11 109 2.0 5.5 3.8 2.3 165 chr3R 31320144 intron CG34347 + chr3R 31320226 intron CG34347 + chr3R 31320309 intron CG34347 + chr3R_11_31320001 chr3R_31320001 RAL-385 1139 chr3R 31413093 31413117 chr3R 31418299 31418310 copia 4 5208 1.5 0.5 1.0 2.0 5217 chr3R 31413093 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-385 1140 chr3R 31435352 31435385 chr3R 31435524 31435557 8 165 2.0 5.5 3.8 1.7 205 chr3R 31435352 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435557 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-385 1141 chr3R 31630046 31630069 chr3R 31630171 31630194 6 125 3.5 1.0 2.2 1.9 148 chr3R 31630046 intron kek6 + chr3R 31630120 intron kek6 + chr3R 31630194 intron kek6 + chr3R_6_31630001 chr3R_31630001 RAL-385 1142 chr3R 31643222 31643239 chr3R 31643321 31643338 4 98 4.5 4.0 4.2 0.8 116 chr3R 31643222 intron kek6 + chr3R 31643280 intron kek6 + chr3R 31643338 intron kek6 + chr3R_4_31640001 chr3R_31640001 RAL-385 1143 chr3R 31961325 31961350 chr3R 31961423 31961445 5 95 4.5 0.5 2.5 1.4 120 chr3R 31961325 intron heph - chr3R 31961385 intron heph - chr3R 31961445 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-385 1144 chr4 149985 150017 chr4 150395 150427 5 410 7.0 12.5 9.8 0.5 442 chr4 149985 intergenic not near genes chr4 150206 intergenic not near genes chr4 150427 intergenic CG32006 + chr4_5_150001 chr4_150001 RAL-385 1145 chr4 521319 521351 chr4 521417 521449 8 98 3.5 2.0 2.8 2.1 130 chr4 521319 intron zfh2 + chr4 521384 intron zfh2 + chr4 521449 intron zfh2 + chr4_8_520001 chr4_520001 RAL-385 1146 chr4 852880 852915 chr4 853264 853299 4 382 2.5 0.5 1.5 1.6 419 chr4 852880 intergenic not near genes chr4 853090 intergenic not near genes chr4 853299 intergenic CG11148 - chr4_4_850001 chr4_850001 RAL-385 1147 chrX 428430 428440 chrX 434603 434644 3S18 4 6189 2.0 2.0 2.0 1.3 6214 chrX 428430 intron CG32816 - chrX 431537 intron CG32816 - chrX 434644 intron CG32816 - chrX_4_430001 chrX_430001 RAL-385 1148 chrX 778134 778151 chrX 778216 778251 5 97 1.5 0.0 0.8 2.8 117 chrX 778134 intron fz3 + chrX 778192 intron fz3 + chrX 778251 intron fz3 + chrX_5_775001 chrX_775001 RAL-385 1149 chrX 806790 806814 chrX 806879 806930 5 97 0.5 1.5 1.0 2.5 140 chrX 806790 intron Sec22 + chrX 806860 intron Sec22 + chrX 806930 intron Sec22 + chrX_5_805001 chrX_805001 RAL-385 1150 chrX 812280 812297 chrX 817896 817896 297 5 5631 4.5 2.0 3.2 1.2 5616 chrX 812280 intron CG43867 - chrX 815088 intron CG43867 - chrX 817896 intron CG43867 - chrX_5_815001 chrX_815001 RAL-385 1151 chrX 1053118 1053120 chrX 16983076 16983077 5 15929957 4.0 9.0 6.5 0.7 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-385 1152 chrX 1357773 1357804 chrX 1367942 1367985 Doc 5 10184 2.5 2.0 2.2 1.6 10212 chrX 1357773 intergenic png - chrX 1362879 intergenic not near genes chrX 1367985 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-385 1153 chrX 1428575 1428622 chrX 1428681 1428692 4 97 1.5 1.5 1.5 1.6 117 chrX 1428575 intron futsch + chrX 1428634 intron futsch + chrX 1428692 intron futsch + chrX_4_1425001 chrX_1425001 RAL-385 1154 chrX 1518037 1518068 chrX 1523459 1523482 jockey 6 5418 2.0 5.5 3.8 1.2 5445 chrX 1518037 intergenic inc + chrX 1520760 intergenic not near genes chrX 1523482 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-385 1155 chrX 1930519 1930568 chrX 1938110 1938159 opus 7 7586 3.5 5.5 4.5 1.3 7640 chrX 1930519 intergenic CG11596 + chrX 1934339 intergenic not near genes chrX 1938159 3` UTR CG3857 - chrX_7_1930001 chrX_1930001 RAL-385 1156 chrX 2429653 2429667 chrX 2429754 2429768 4 101 0.0 1.0 0.5 2.7 115 chrX 2429653 intergenic not near genes chrX 2429710 intergenic not near genes chrX 2429768 intergenic not near genes chrX_4_2425001 chrX_2425001 RAL-385 1157 chrX 2578800 2578844 chrX 2578921 2578958 6 122 1.5 1.5 1.5 2.4 158 chrX 2578800 intergenic Pdfr +,Vha36-3 - chrX 2578879 intergenic Vha36-3 -,Pdfr + chrX 2578958 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-385 1158 chrX 2877023 2877065 chrX 2877145 2877158 6 113 3.0 1.0 2.0 2.0 135 chrX 2877023 intron kirre + chrX 2877090 intron kirre + chrX 2877158 intron kirre + chrX_6_2875001 chrX_2875001 RAL-385 1159 chrX 3155710 3155746 chrX 3155819 3155855 4 104 0.0 1.5 0.8 2.2 145 chrX 3155710 intron N + chrX 3155782 intron N + chrX 3155855 intron N + chrX_4_3155001 chrX_3155001 RAL-385 1160 chrX 3243611 3243658 chrX 3243721 3243768 12 106 4.5 5.5 5.0 2.0 157 chrX 3243611 intron dnc + chrX 3243690 intron dnc + chrX 3243768 intron dnc + chrX_12_3240001 chrX_3240001 RAL-385 1161 chrX 3357590 3357630 chrX 3357691 3357698 4 91 2.0 0.5 1.2 1.8 108 chrX 3357590 intergenic not near genes chrX 3357644 intergenic not near genes chrX 3357698 intergenic not near genes chrX_4_3355001 chrX_3355001 RAL-385 1162 chrX 3373666 3373700 chrX 3374955 3374964 4 1283 9.5 10.5 10.0 0.4 1298 chrX 3373666 5` UTR,5` UTR CR44999 +,dm + chrX 3374315 intron,intron CR44999 +,dm + chrX 3374964 5` UTR,5` UTR CR44999 +,dm + chrX_4_3370001 chrX_3370001 RAL-385 1163 chrX 3459962 3460015 chrX 3460059 3460099 11 94 2.5 1.0 1.8 3.9 137 chrX 3459962 intron,intron CR44999 +,CG16782 - chrX 3460030 intron,5` UTR CR44999 +,CG16782 - chrX 3460099 intron,5` UTR CR44999 +,CG16782 - chrX_11_3460001 chrX_3460001 RAL-385 1164 chrX 3493072 3493116 chrX 3502251 3502295 roo 4 9176 1.0 0.5 0.8 2.2 9223 chrX 3493072 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502295 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-385 1165 chrX 3513745 3513789 chrX 3513842 3513869 6 98 1.0 3.0 2.0 2.0 124 chrX 3513745 intron,intron CR44999 +,CG32791 - chrX 3513807 intron,intron CR44999 +,CG32791 - chrX 3513869 intron,intron CR44999 +,CG32791 - chrX_6_3510001 chrX_3510001 RAL-385 1166 chrX 3597548 3597577 chrX 3619718 3619761 roo 4 22172 2.5 1.0 1.8 1.4 22213 chrX 3597548 intron AstA-R1 + chrX 3608654 intron AstA-R1 + chrX 3619761 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-385 1167 chrX 3657406 3657436 chrX 3657505 3657536 5 95 0.0 3.5 1.8 1.8 130 chrX 3657406 intron AstA-R1 + chrX 3657471 intron AstA-R1 + chrX 3657536 intron AstA-R1 + chrX_5_3655001 chrX_3655001 RAL-385 1168 chrX 3713083 3713128 chrX 3713211 3713257 5 129 3.5 4.0 3.8 1.0 174 chrX 3713083 intron Rala - chrX 3713170 intron Rala - chrX 3713257 intron Rala - chrX_5_3710001 chrX_3710001 RAL-385 1169 chrX 3866121 3866135 chrX 3866186 3866218 6 82 1.5 1.0 1.2 2.7 97 chrX 3866121 intron yin - chrX 3866170 intron yin - chrX 3866218 intron yin - chrX_6_3865001 chrX_3865001 RAL-385 1170 chrX 3880442 3880489 chrX 3880548 3880589 4 104 1.5 4.0 2.8 1.1 147 chrX 3880442 intergenic VhaAC39-1 + chrX 3880516 intergenic VhaAC39-1 + chrX 3880589 intergenic VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-385 1171 chrX 3881257 3881289 chrX 3881416 3881448 5 158 1.0 3.0 2.0 1.7 191 chrX 3881257 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881448 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-385 1172 chrX 3986849 3986878 chrX 3994502 3994530 412 8 7651 1.0 1.0 1.0 4.0 7681 chrX 3986849 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994530 intergenic not near genes chrX_8_3990001 chrX_3990001 RAL-385 1173 chrX 4145042 4145083 chrX 4145185 4145199 5 132 2.5 0.5 1.5 2.0 157 chrX 4145042 intron Fas2 - chrX 4145120 intron Fas2 - chrX 4145199 intron Fas2 - chrX_5_4145001 chrX_4145001 RAL-385 1174 chrX 4792364 4792406 chrX 4792816 4792838 jockey 5 446 1.0 1.5 1.2 2.3 474 chrX 4792364 intergenic not near genes chrX 4792601 intergenic not near genes chrX 4792838 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-385 1175 chrX 4827988 4828001 chrX 4835343 4835390 Stalker4 4 7368 1.0 1.5 1.2 1.8 7402 chrX 4827988 intergenic not near genes chrX 4831689 intergenic not near genes chrX 4835390 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-385 1176 chrX 4871203 4871228 chrX 4871307 4871347 7 113 1.0 1.5 1.2 3.2 144 chrX 4871203 intron CG42594 + chrX 4871275 intron CG42594 + chrX 4871347 intron CG42594 + chrX_7_4870001 chrX_4870001 RAL-385 1177 chrX 4975581 4975610 chrX 4975778 4975802 7 194 0.5 0.0 0.2 5.8 221 chrX 4975581 intron CR44833 - chrX 4975692 intron CR44833 - chrX 4975802 intron CR44833 - chrX_7_4975001 chrX_4975001 RAL-385 1178 chrX 4990023 4990075 chrX 4997257 4997309 roo 5 7225 1.5 1.5 1.5 2.0 7286 chrX 4990023 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997309 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-385 1179 chrX 5096261 5096304 chrX 5103845 5103869 springer 5 7581 0.0 2.0 1.0 2.5 7608 chrX 5096261 intron,intron CG15465 +,rg + chrX 5100065 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-385 1180 chrX 5277552 5277577 chrX 5277745 5277770 4 192 1.0 2.0 1.5 1.6 218 chrX 5277552 intergenic not near genes chrX 5277661 intergenic not near genes chrX 5277770 intergenic not near genes chrX_4_5275001 chrX_5275001 RAL-385 1181 chrX 5524847 5524859 chrX 5528730 5528742 412 7 3882 1.5 2.5 2.0 2.3 3895 chrX 5524847 intergenic snoRNA:Psi28S-3342 - chrX 5526794 intergenic not near genes chrX 5528742 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-385 1182 chrX 6115871 6115924 chrX 6116028 6116081 7 155 3.0 2.0 2.5 2.0 210 chrX 6115871 intron Ca-alpha1T - chrX 6115976 intron Ca-alpha1T - chrX 6116081 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-385 1183 chrX 6171584 6171613 chrX 6179016 6179023 Quasimodo 5 7438 0.5 1.5 1.0 2.5 7439 chrX 6171584 intron Ca-alpha1T - chrX 6175304 intron Ca-alpha1T - chrX 6179023 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-385 1184 chrX 6487959 6487972 chrX 6488061 6488074 4 102 3.0 2.5 2.8 1.1 115 chrX 6487959 intron CG42340 - chrX 6488016 intron CG42340 - chrX 6488074 intron CG42340 - chrX_4_6485001 chrX_6485001 RAL-385 1185 chrX 6591839 6591856 chrX 6591944 6591961 5 105 1.5 0.0 0.8 2.8 122 chrX 6591839 intron Pat1 + chrX 6591900 intron Pat1 + chrX 6591961 intron Pat1 + chrX_5_6590001 chrX_6590001 RAL-385 1186 chrX 6618447 6618472 chrX 6618545 6618566 6 94 0.5 1.0 0.8 3.3 119 chrX 6618447 intron pigs + chrX 6618506 intron pigs + chrX 6618566 intron pigs + chrX_6_6615001 chrX_6615001 RAL-385 1187 chrX 6897569 6897577 chrX 7243785 7243793 4 346216 1.0 4.0 2.5 1.1 346224 chrX 6897569 intergenic not near genes chrX 7070681 exon CG4607 + chrX 7243793 intron CR44357 - chrX_4_7070001 chrX_7070001 RAL-385 1188 chrX 7023580 7023605 chrX 7030990 7031008 Tabor 5 7406 3.5 1.5 2.5 1.4 7428 chrX 7023580 intron CG12541 - chrX 7027294 intron CG12541 - chrX 7031008 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-385 1189 chrX 6897327 6897367 chrX 7441657 7441739 4 544344 0.0 5.0 2.5 1.1 544412 chrX 6897327 intergenic not near genes chrX 7169533 intron,intron CG9650 +,CR44357 - chrX 7441739 intergenic not near genes chrX_4_7165001 chrX_7165001 RAL-385 1190 chrX 7702886 7702936 chrX 7703343 7703364 jockey 11 454 3.5 3.0 3.2 2.6 478 chrX 7702886 intron CHES-1-like - chrX 7703125 intron CHES-1-like - chrX 7703364 intron CHES-1-like - chrX_11_7700001 chrX_7700001 RAL-385 1191 chrX 7737148 7737163 chrX 7737250 7737265 4 102 0.5 1.0 0.8 2.2 117 chrX 7737148 5` UTR Tom40 + chrX 7737206 intron Tom40 + chrX 7737265 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-385 1192 chrX 8031419 8031453 chrX 8035735 8035782 Juan 6 4325 4.0 2.5 3.2 1.4 4363 chrX 8031419 intergenic not near genes chrX 8033600 intergenic not near genes chrX 8035782 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-385 1193 chrX 8085554 8085602 chrX 8085660 8085708 5 105 3.0 1.5 2.2 1.6 154 chrX 8085554 intron,5` UTR CG2256 -,CR45535 + chrX 8085631 intron,5` UTR CG2256 -,CR45535 + chrX 8085708 intron,5` UTR CG2256 -,CR45535 + chrX_5_8085001 chrX_8085001 RAL-385 1194 chrX 8364836 8364872 chrX 8365253 8365306 BS 6 430 2.5 1.0 1.8 2.1 470 chrX 8364836 intron nAChRalpha3 - chrX 8365071 intron nAChRalpha3 - chrX 8365306 intron nAChRalpha3 - chrX_6_8365001 chrX_8365001 RAL-385 1195 chrX 8506513 8506558 chrX 8506741 8506744 6 218 0.5 0.0 0.2 5.0 231 chrX 8506513 intron CG33181 + chrX 8506628 intron CG33181 + chrX 8506744 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-385 1196 chrX 8585391 8585418 chrX 8585515 8585566 4 129 4.5 2.0 3.2 1.0 175 chrX 8585391 intron CG12065 + chrX 8585478 intron CG12065 + chrX 8585566 intron CG12065 + chrX_4_8585001 chrX_8585001 RAL-385 1197 chrX 8605301 8605347 chrX 8605398 8605413 4 89 2.5 1.5 2.0 1.3 112 chrX 8605301 exon Caf1-180 - chrX 8605357 exon Caf1-180 - chrX 8605413 exon Caf1-180 - chrX_4_8605001 chrX_8605001 RAL-385 1198 chrX 8744303 8744311 chrX 8744445 8744483 4 157 2.0 0.5 1.2 1.8 180 chrX 8744303 intergenic not near genes chrX 8744393 intergenic not near genes chrX 8744483 intergenic not near genes chrX_4_8740001 chrX_8740001 RAL-385 1199 chrX 8748406 8748429 chrX 8748517 8748540 6 111 1.5 2.0 1.8 2.1 134 chrX 8748406 intergenic not near genes chrX 8748473 intergenic not near genes chrX 8748540 intergenic not near genes chrX_6_8745001 chrX_8745001 RAL-385 1200 chrX 8877775 8877792 chrX 8877919 8877936 6 144 2.0 0.5 1.2 2.7 161 chrX 8877775 intron Moe - chrX 8877856 intron Moe - chrX 8877936 intron Moe - chrX_6_8875001 chrX_8875001 RAL-385 1201 chrX 8922336 8922360 chrX 8922761 8922761 jockey 4 430 0.5 0.5 0.5 2.7 425 chrX 8922336 intron rdgA + chrX 8922548 intron rdgA + chrX 8922761 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-385 1202 chrX 8927577 8927610 chrX 8929867 8929900 NOF 8 2285 2.0 1.5 1.8 2.9 2323 chrX 8927577 intron rdgA + chrX 8928738 intron rdgA + chrX 8929900 intron rdgA + chrX_8_8925001 chrX_8925001 RAL-385 1203 chrX 9439409 9439454 chrX 9439506 9439510 5 86 1.0 0.5 0.8 2.8 101 chrX 9439409 intron mgl - chrX 9439460 intron mgl - chrX 9439510 intron mgl - chrX_5_9435001 chrX_9435001 RAL-385 1204 chrX 9599168 9599200 chrX 9599266 9599270 5 84 1.5 2.0 1.8 1.8 102 chrX 9599168 intergenic not near genes chrX 9599219 intergenic not near genes chrX 9599270 intergenic not near genes chrX_5_9595001 chrX_9595001 RAL-385 1205 chrX 9664052 9664093 chrX 9664151 9664192 7 95 2.0 4.0 3.0 1.8 140 chrX 9664052 intergenic not near genes chrX 9664122 intergenic not near genes chrX 9664192 intergenic not near genes chrX_7_9660001 chrX_9660001 RAL-385 1206 chrX 9791852 9791868 chrX 9791968 9791985 5 117 7.0 1.5 4.2 1.0 133 chrX 9791852 intron CG32698 + chrX 9791918 intron CG32698 + chrX 9791985 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-385 1207 chrX 9845361 9845361 chrX 14544906 14544908 4 4699546 9.5 3.5 6.5 0.5 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_4_12195001 chrX_12195001 RAL-385 1208 chrX 9997849 9997874 chrX 9997992 9998028 11 150 1.5 4.5 3.0 2.8 179 chrX 9997849 intron CG32694 + chrX 9997938 intron CG32694 + chrX 9998028 intron CG32694 + chrX_11_9995001 chrX_9995001 RAL-385 1209 chrX 10005034 10005052 chrX 10005132 10005152 5 95 2.0 3.0 2.5 1.4 118 chrX 10005034 intron CG32694 + chrX 10005093 intron CG32694 + chrX 10005152 intron CG32694 + chrX_5_10005001 chrX_10005001 RAL-385 1210 chrX 10317545 10317578 chrX 10317635 10317650 4 90 1.0 1.5 1.2 1.8 105 chrX 10317545 intron alpha-Man-I - chrX 10317598 intron alpha-Man-I - chrX 10317650 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-385 1211 chrX 10401384 10401424 chrX 10401480 10401524 4 98 1.5 1.0 1.2 1.8 140 chrX 10401384 intron flw + chrX 10401454 intron flw + chrX 10401524 intron flw + chrX_4_10400001 chrX_10400001 RAL-385 1212 chrX 10550317 10550347 chrX 10550415 10550440 7 97 2.0 1.5 1.8 2.5 123 chrX 10550317 intron spri - chrX 10550378 intron spri - chrX 10550440 intron spri - chrX_7_10550001 chrX_10550001 RAL-385 1213 chrX 10651620 10651642 chrX 10651751 10651766 7 132 2.0 5.0 3.5 1.6 146 chrX 10651620 intron X11Lbeta + chrX 10651693 intron X11Lbeta + chrX 10651766 intron X11Lbeta + chrX_7_10650001 chrX_10650001 RAL-385 1214 chrX 10666446 10666477 chrX 10666631 10666654 8 186 2.5 1.5 2.0 2.7 208 chrX 10666446 intron X11Lbeta + chrX 10666550 intron X11Lbeta + chrX 10666654 intron X11Lbeta + chrX_8_10665001 chrX_10665001 RAL-385 1215 chrX 10719087 10719140 chrX 10719198 10719238 6 92 0.5 2.0 1.2 2.7 151 chrX 10719087 intron CG32676 - chrX 10719162 intron CG32676 - chrX 10719238 intron CG32676 - chrX_6_10715001 chrX_10715001 RAL-385 1216 chrX 11069142 11069192 chrX 11069305 11069331 6 155 0.0 0.5 0.2 5.0 189 chrX 11069142 intergenic not near genes chrX 11069236 intergenic not near genes chrX 11069331 intergenic not near genes chrX_6_11065001 chrX_11065001 RAL-385 1217 chrX 11087850 11087884 chrX 11087963 11087967 5 108 3.0 1.5 2.2 1.6 117 chrX 11087850 intergenic not near genes chrX 11087908 intergenic not near genes chrX 11087967 intergenic not near genes chrX_5_11085001 chrX_11085001 RAL-385 1218 chrX 11095983 11095999 chrX 11103105 11103121 HMS-Beagle 4 7122 7.5 5.0 6.2 0.6 7138 chrX 11095983 intergenic not near genes chrX 11099552 intergenic not near genes chrX 11103121 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-385 1219 chrX 11109417 11109417 chrX 12946233 12946235 28 1836817 16.0 17.5 16.8 1.6 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_28_12025001 chrX_12025001 RAL-385 1220 chrX 11379761 11379777 chrX 11379926 11379942 4 164 3.0 4.0 3.5 0.9 181 chrX 11379761 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379942 intron dlg1 + chrX_4_11375001 chrX_11375001 RAL-385 1221 chrX 11379783 11379792 chrX 11379911 11379952 5 155 0.5 1.5 1.0 2.5 169 chrX 11379783 intron dlg1 + chrX 11379868 intron dlg1 + chrX 11379952 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-385 1222 chrX 11464811 11464830 chrX 11464900 11464929 5 92 0.5 1.5 1.0 2.5 118 chrX 11464811 intron CG43155 + chrX 11464870 intron CG43155 + chrX 11464929 intron CG43155 + chrX_5_11460001 chrX_11460001 RAL-385 1223 chrX 11633404 11633433 chrX 11640472 11640507 297 4 7072 3.0 1.0 2.0 1.3 7103 chrX 11633404 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640507 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-385 1224 chrX 11783500 11783542 chrX 11783601 11783633 4 98 3.0 1.0 2.0 1.3 133 chrX 11783500 intergenic not near genes chrX 11783566 intergenic not near genes chrX 11783633 intergenic not near genes chrX_4_11780001 chrX_11780001 RAL-385 1225 chrX 11936552 11936580 chrX 11936671 11936681 4 114 0.5 2.0 1.2 1.8 129 chrX 11936552 intron cac - chrX 11936616 intron cac - chrX 11936681 intron cac - chrX_4_11935001 chrX_11935001 RAL-385 1226 chrX 12246954 12246962 chrX 12247069 12247078 6 115 2.0 2.0 2.0 2.0 124 chrX 12246954 intron Ten-a + chrX 12247016 intron Ten-a + chrX 12247078 intron Ten-a + chrX_6_12245001 chrX_12245001 RAL-385 1227 chrX 12718211 12718265 chrX 12718312 12718362 12 99 3.0 1.5 2.2 3.8 151 chrX 12718211 intron,intron Smr -,CR43963 - chrX 12718286 intron,intron Smr -,CR43963 - chrX 12718362 intron,intron Smr -,CR43963 - chrX_12_12715001 chrX_12715001 RAL-385 1228 chrX 12919692 12919744 chrX 12919802 12919848 7 108 2.0 2.0 2.0 2.3 156 chrX 12919692 5` UTR fne + chrX 12919770 intron fne + chrX 12919848 intron fne + chrX_7_12915001 chrX_12915001 RAL-385 1229 chrX 12930586 12930605 chrX 12937722 12937736 HMS-Beagle 4 7130 1.5 3.0 2.2 1.2 7150 chrX 12930586 intron fne + chrX 12934161 intron fne + chrX 12937736 intron fne + chrX_4_12930001 chrX_12930001 RAL-385 1230 chrX 12946234 12946234 chrX 18572525 18572526 4 5626291 18.0 12.5 15.2 0.2 5626292 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-385 1231 chrX 13146576 13146614 chrX 13146684 13146722 6 107 1.5 2.5 2.0 2.0 146 chrX 13146576 intron CG32645 + chrX 13146649 intron CG32645 + chrX 13146722 intron CG32645 + chrX_6_13145001 chrX_13145001 RAL-385 1232 chrX 13269185 13269228 chrX 13269281 13269293 6 88 0.0 0.5 0.2 5.0 108 chrX 13269185 intron HDAC4 - chrX 13269239 intron HDAC4 - chrX 13269293 intron HDAC4 - chrX_6_13265001 chrX_13265001 RAL-385 1233 chrX 13278138 13278171 chrX 13278241 13278273 6 103 4.5 3.0 3.8 1.2 135 chrX 13278138 intron HDAC4 - chrX 13278206 intron HDAC4 - chrX 13278273 intron HDAC4 - chrX_6_13275001 chrX_13275001 RAL-385 1234 chrX 13314408 13314429 chrX 13314523 13314544 4 115 3.0 0.0 1.5 1.6 136 chrX 13314408 intron IP3K2 + chrX 13314476 intron IP3K2 + chrX 13314544 intron IP3K2 + chrX_4_13310001 chrX_13310001 RAL-385 1235 chrX 13463625 13463677 chrX 13469221 13469241 mdg3 6 5590 1.5 1.0 1.2 2.7 5616 chrX 13463625 intron Neto + chrX 13466433 intron Neto + chrX 13469241 intron Neto + chrX_6_13465001 chrX_13465001 RAL-385 1236 chrX 13563417 13563450 chrX 13563515 13563550 5 98 1.0 0.0 0.5 3.3 133 chrX 13563417 intergenic CG32633 +,Tango13 + chrX 13563484 intergenic CG32633 +,Tango13 + chrX 13563550 intergenic CG32633 +,Tango13 + chrX_5_13560001 chrX_13560001 RAL-385 1237 chrX 13934281 13934302 chrX 13934384 13934405 4 103 1.0 5.0 3.0 1.0 124 chrX 13934281 intron mamo - chrX 13934343 intron mamo - chrX 13934405 intron mamo - chrX_4_13930001 chrX_13930001 RAL-385 1238 chrX 13934306 13934319 chrX 13934373 13934422 4 86 0.5 2.5 1.5 1.6 116 chrX 13934306 intron mamo - chrX 13934364 intron mamo - chrX 13934422 intron mamo - chrX_4_13930001 chrX_13930001 RAL-385 1239 chrX 13057304 13057304 chrX 13966949 13966951 4 909646 4.5 2.0 3.2 1.0 909647 chrX 13057304 intron rad + chrX 13512128 intron Neto + chrX 13966951 intron mamo - chrX_4_13510001 chrX_13510001 RAL-385 1240 chrX 14105003 14105051 chrX 14114174 14114209 roo 6 9154 1.5 0.5 1.0 3.0 9206 chrX 14105003 intergenic not near genes chrX 14109606 intergenic not near genes chrX 14114209 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-385 1241 chrX 14209450 14209490 chrX 14209561 14209601 4 111 3.5 3.0 3.2 1.0 151 chrX 14209450 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209526 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209601 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-385 1242 chrX 14636457 14636493 chrX 14641912 14641946 I-element 4 5458 0.5 2.0 1.2 1.8 5489 chrX 14636457 intron NetA - chrX 14639202 intron NetA - chrX 14641946 intron NetA - chrX_4_14635001 chrX_14635001 RAL-385 1243 chrX 14714035 14714057 chrX 14714137 14714159 4 102 2.0 2.0 2.0 1.3 124 chrX 14714035 intron NetB - chrX 14714097 intron NetB - chrX 14714159 intron NetB - chrX_4_14710001 chrX_14710001 RAL-385 1244 chrX 14778018 14778046 chrX 14782835 14782863 Doc 6 4817 4.0 1.5 2.8 1.6 4845 chrX 14778018 intergenic CG5347 + chrX 14780440 intergenic not near genes chrX 14782863 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-385 1245 chrX 14883578 14883619 chrX 14883674 14883715 4 96 2.5 0.0 1.2 1.8 137 chrX 14883578 intron Flo2 + chrX 14883646 intron Flo2 + chrX 14883715 intron Flo2 + chrX_4_14880001 chrX_14880001 RAL-385 1246 chrX 14991763 14991807 chrX 14991861 14991904 12 90 3.0 2.5 2.8 3.2 141 chrX 14991763 intron eag + chrX 14991834 intron eag + chrX 14991904 intron eag + chrX_12_14990001 chrX_14990001 RAL-385 1247 chrX 15421899 15421946 chrX 15423430 15423476 pogo 10 1530 4.5 2.5 3.5 2.2 1577 chrX 15421899 intron Cngl - chrX 15422688 intron Cngl - chrX 15423476 intron Cngl - chrX_10_15420001 chrX_15420001 RAL-385 1248 chrX 15536669 15536704 chrX 15536793 15536829 5 126 1.5 1.5 1.5 2.0 160 chrX 15536669 intron Ac13E - chrX 15536749 intron Ac13E - chrX 15536829 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-385 1249 chrX 15565623 15565667 chrX 15565729 15565773 6 102 1.5 2.5 2.0 2.0 150 chrX 15565623 intergenic not near genes chrX 15565698 intergenic not near genes chrX 15565773 intergenic not near genes chrX_6_15565001 chrX_15565001 RAL-385 1250 chrX 16222764 16222806 chrX 16231134 16231176 roo 7 8370 0.5 3.0 1.8 2.5 8412 chrX 16222764 intergenic not near genes chrX 16226970 intergenic not near genes chrX 16231176 intergenic not near genes chrX_7_16225001 chrX_16225001 RAL-385 1251 chrX 16355258 16355302 chrX 16355440 16355484 6 181 3.0 2.0 2.5 1.7 226 chrX 16355258 3` UTR sl + chrX 16355371 3` UTR sl + chrX 16355484 3` UTR sl + chrX_6_16355001 chrX_16355001 RAL-385 1252 chrX 16460880 16460913 chrX 16460995 16461023 4 113 1.5 3.0 2.2 1.2 143 chrX 16460880 3` UTR para - chrX 16460952 3` UTR para - chrX 16461023 3` UTR para - chrX_4_16460001 chrX_16460001 RAL-385 1253 chrX 16492634 16492679 chrX 16498231 16498248 mdg3 8 5586 2.5 2.0 2.2 2.5 5614 chrX 16492634 intron para - chrX 16495441 intron para - chrX 16498248 intron para - chrX_8_16495001 chrX_16495001 RAL-385 1254 chrX 16681613 16681656 chrX 16681709 16681752 6 96 2.5 2.0 2.2 1.9 139 chrX 16681613 3` UTR,intron sing +,Axs - chrX 16681682 3` UTR,intron sing +,Axs - chrX 16681752 3` UTR,intron sing +,Axs - chrX_6_16680001 chrX_16680001 RAL-385 1255 chrX 16785264 16785304 chrX 16785388 16785421 6 116 3.5 4.5 4.0 1.2 157 chrX 16785264 3` UTR CG9609 - chrX 16785342 3` UTR CG9609 - chrX 16785421 3` UTR CG9609 - chrX_6_16785001 chrX_16785001 RAL-385 1256 chrX 1053117 1053123 chrX 16983076 16983076 9 15929955 4.5 9.0 6.8 1.2 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_9_9015001 chrX_9015001 RAL-385 1257 chrX 1053119 1053124 chrX 16983077 16983077 6 15929956 4.5 9.0 6.8 0.8 15929958 chrX 1053119 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-385 1258 chrX 17063158 17063203 chrX 17063265 17063310 7 104 1.0 3.5 2.2 2.2 152 chrX 17063158 intron CG45002 - chrX 17063234 intron CG45002 - chrX 17063310 intron CG45002 - chrX_7_17060001 chrX_17060001 RAL-385 1259 chrX 17100154 17100167 chrX 17100286 17100299 4 130 1.0 1.5 1.2 1.8 145 chrX 17100154 intron CG4991 + chrX 17100226 intron CG4991 + chrX 17100299 intron CG4991 + chrX_4_17100001 chrX_17100001 RAL-385 1260 chrX 17221813 17221855 chrX 17221919 17221961 8 105 4.5 2.5 3.5 1.8 148 chrX 17221813 intron CG5172 + chrX 17221887 intron CG5172 + chrX 17221961 intron CG5172 + chrX_8_17220001 chrX_17220001 RAL-385 1261 chrX 17316359 17316387 chrX 17316462 17316491 6 100 4.5 0.5 2.5 1.7 132 chrX 17316359 intron B-H2 + chrX 17316425 intron B-H2 + chrX 17316491 intron B-H2 + chrX_6_17315001 chrX_17315001 RAL-385 1262 chrX 17434420 17434444 chrX 17434533 17434552 4 112 1.0 0.5 0.8 2.2 132 chrX 17434420 intron CG12994 - chrX 17434486 intron CG12994 - chrX 17434552 intron CG12994 - chrX_4_17430001 chrX_17430001 RAL-385 1263 chrX 17493233 17493282 chrX 17493333 17493354 9 95 1.0 2.0 1.5 3.6 121 chrX 17493233 intron CG43658 - chrX 17493294 intron CG43658 - chrX 17493354 intron CG43658 - chrX_9_17490001 chrX_17490001 RAL-385 1264 chrX 17502346 17502368 chrX 17502430 17502467 6 94 4.0 2.0 3.0 1.5 121 chrX 17502346 intron CG43658 - chrX 17502406 intron CG43658 - chrX 17502467 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-385 1265 chrX 17546949 17547003 chrX 17547102 17547156 5 153 0.0 0.0 0.0 5.0 207 chrX 17546949 intron CG43658 - chrX 17547052 intron CG43658 - chrX 17547156 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-385 1266 chrX 17766345 17766372 chrX 17766456 17766490 4 114 0.5 2.0 1.2 1.8 145 chrX 17766345 intergenic not near genes chrX 17766418 intergenic not near genes chrX 17766490 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-385 1267 chrX 17968893 17968929 chrX 17969031 17969067 5 138 4.0 1.5 2.8 1.3 174 chrX 17968893 intron Sh - chrX 17968980 intron Sh - chrX 17969067 intron Sh - chrX_5_17965001 chrX_17965001 RAL-385 1268 chrX 18040433 18040449 chrX 18040536 18040557 4 106 1.0 3.0 2.0 1.3 124 chrX 18040433 intron Sh - chrX 18040495 intron Sh - chrX 18040557 intron Sh - chrX_4_18040001 chrX_18040001 RAL-385 1269 chrX 18194060 18194101 chrX 18194600 18194656 BS 10 551 1.5 0.5 1.0 5.0 596 chrX 18194060 intron Frq2 + chrX 18194358 intron Frq2 + chrX 18194656 intron Frq2 + chrX_10_18190001 chrX_18190001 RAL-385 1270 chrX 18218032 18218055 chrX 18218153 18218187 4 129 3.5 0.5 2.0 1.3 155 chrX 18218032 intron CG33639 - chrX 18218110 intron CG33639 - chrX 18218187 intron CG33639 - chrX_4_18215001 chrX_18215001 RAL-385 1271 chrX 18349987 18350031 chrX 18350092 18350136 5 101 2.0 1.5 1.8 1.8 149 chrX 18349987 intron CG6123 - chrX 18350062 intron CG6123 - chrX 18350136 intron CG6123 - chrX_5_18350001 chrX_18350001 RAL-385 1272 chrX 12946235 12946235 chrX 18572525 18572526 10 5626290 18.0 12.5 15.2 0.6 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_10_15755001 chrX_15755001 RAL-385 1273 chrX 18671203 18671238 chrX 18671305 18671340 5 102 1.5 1.5 1.5 2.0 137 chrX 18671203 intergenic not near genes chrX 18671272 intergenic not near genes chrX 18671340 intergenic not near genes chrX_5_18670001 chrX_18670001 RAL-385 1274 chrX 18896497 18896549 chrX 18896628 18896629 10 125 3.0 2.0 2.5 2.9 132 chrX 18896497 3` UTR CG7349 + chrX 18896563 3` UTR CG7349 + chrX 18896629 intergenic CG7349 + chrX_10_18895001 chrX_18895001 RAL-385 1275 chrX 19060405 19060433 chrX 19065208 19065237 Doc 4 4804 3.0 3.5 3.2 1.0 4832 chrX 19060405 intron CG14190 + chrX 19062821 intron CG14190 + chrX 19065237 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-385 1276 chrX 19136534 19136581 chrX 19143474 19143503 412 8 6935 1.5 2.0 1.8 2.9 6969 chrX 19136534 intergenic not near genes chrX 19140018 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_8_19140001 chrX_19140001 RAL-385 1277 chrX 19281009 19281022 chrX 19281130 19281141 4 134 0.0 1.5 0.8 2.2 132 chrX 19281009 intergenic CG8034 - chrX 19281075 intergenic CG8034 - chrX 19281141 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-385 1278 chrX 19356974 19356996 chrX 19358435 19358442 NOF 4 1457 2.5 0.0 1.2 1.8 1468 chrX 19356974 intron kek5 + chrX 19357708 intron kek5 + chrX 19358442 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-385 1279 chrX 19404609 19404643 chrX 19404727 19404729 4 104 0.0 0.0 0.0 4.0 120 chrX 19404609 intron kek5 + chrX 19404669 intron kek5 + chrX 19404729 intron kek5 + chrX_4_19400001 chrX_19400001 RAL-385 1280 chrX 16983076 16983077 chrX 19404964 19404965 5 2421888 8.5 3.5 6.0 0.7 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_5_18190001 chrX_18190001 RAL-385 1281 chrX 19500560 19500739 chrX 19500657 19500845 11 100 0.0 2.5 1.2 5.0 285 chrX 19500560 intron,intron CG14200 +,Pfrx + chrX 19500702 intron,intron CG14200 +,Pfrx + chrX 19500845 intron,intron CG14200 +,Pfrx + chrX_11_19500001 chrX_19500001 RAL-385 1282 chrX 19541413 19541440 chrX 19541512 19541520 4 95 4.0 1.5 2.8 1.1 107 chrX 19541413 intron CG32532 - chrX 19541466 intron CG32532 - chrX 19541520 intron CG32532 - chrX_4_19540001 chrX_19540001 RAL-385 1283 chrX 19576418 19576581 chrX 19576526 19576661 7 95 0.0 1.0 0.5 4.7 243 chrX 19576418 intron Tao - chrX 19576540 intron Tao - chrX 19576661 intron Tao - chrX_7_19575001 chrX_19575001 RAL-385 1284 chrX 19593932 19593967 chrX 19594036 19594036 6 98 2.0 3.5 2.8 1.6 104 chrX 19593932 exon CG14205 + chrX 19593984 exon CG14205 + chrX 19594036 intron CG14205 + chrX_6_19590001 chrX_19590001 RAL-385 1285 chrX 19595713 19595739 chrX 19595822 19595842 5 108 0.0 2.5 1.2 2.3 129 chrX 19595713 intergenic CG14205 + chrX 19595778 intergenic CG14205 + chrX 19595842 intergenic CG14205 + chrX_5_19595001 chrX_19595001 RAL-385 1286 chrX 19689394 19689438 chrX 19689492 19689536 11 91 2.0 3.5 2.8 2.9 142 chrX 19689394 intergenic Mer -,CG14227 - chrX 19689465 intergenic Mer - chrX 19689536 intergenic Mer - chrX_11_19685001 chrX_19685001 RAL-385 1287 chrX 19710056 19710099 chrX 19711862 19711905 S-element 6 1802 1.5 4.5 3.0 1.5 1849 chrX 19710056 intron meso18E - chrX 19710980 intron meso18E - chrX 19711905 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-385 1288 chrX 19822849 19822854 chrX 19822997 19823041 4 174 2.0 3.0 2.5 1.1 192 chrX 19822849 intergenic not near genes chrX 19822945 intergenic skpE - chrX 19823041 intergenic skpE - chrX_4_19820001 chrX_19820001 RAL-385 1289 chrX 19827331 19827382 chrX 19827429 19827480 13 96 4.0 1.5 2.8 3.4 149 chrX 19827331 intergenic not near genes chrX 19827406 intergenic not near genes chrX 19827480 intergenic not near genes chrX_13_19825001 chrX_19825001 RAL-385 1290 chrX 20103949 20103985 chrX 20104052 20104094 4 100 0.0 1.5 0.8 2.2 145 chrX 20103949 intergenic not near genes chrX 20104022 intergenic not near genes chrX 20104094 intergenic not near genes chrX_4_20100001 chrX_20100001 RAL-385 1291 chrX 20125382 20125395 chrX 20125478 20125497 4 100 3.5 6.5 5.0 0.7 115 chrX 20125382 intergenic CG34331 + chrX 20125440 intergenic CG34331 + chrX 20125497 intergenic CG34331 + chrX_4_20125001 chrX_20125001 RAL-385 1292 chrX 20269912 20269939 chrX 20270014 20270032 4 96 5.0 1.5 3.2 1.0 120 chrX 20269912 intergenic Inx6 - chrX 20269972 intergenic Inx6 - chrX 20270032 intergenic Inx6 - chrX_4_20265001 chrX_20265001 RAL-385 1293 chrX 20271487 20271521 chrX 20271599 20271633 7 108 1.5 0.5 1.0 3.5 146 chrX 20271487 intergenic not near genes chrX 20271560 intergenic not near genes chrX 20271633 intergenic not near genes chrX_7_20270001 chrX_20270001 RAL-385 1294 chrX 20312869 20312874 chrX 20312967 20312972 5 98 1.0 1.0 1.0 2.5 103 chrX 20312869 intron CG1504 - chrX 20312920 intron CG1504 - chrX 20312972 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-385 1295 chrX 20374110 20374128 chrX 20374178 20374217 5 78 0.5 2.5 1.5 2.0 107 chrX 20374110 intergenic not near genes chrX 20374164 intergenic not near genes chrX 20374217 intergenic not near genes chrX_5_20370001 chrX_20370001 RAL-385 1296 chrX 20467994 20468029 chrX 20468103 20468116 5 102 1.5 0.0 0.8 2.8 122 chrX 20467994 intron GstT3 + chrX 20468055 intron GstT3 + chrX 20468116 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-385 1297 chrX 20484371 20484395 chrX 20484496 20484513 5 124 1.5 5.5 3.5 1.1 142 chrX 20484371 intron RhoGAP19D - chrX 20484442 intron RhoGAP19D - chrX 20484513 intron RhoGAP19D - chrX_5_20480001 chrX_20480001 RAL-385 1298 chrX 20493912 20493928 chrX 20494091 20494099 6 175 0.0 3.0 1.5 2.4 187 chrX 20493912 intron RhoGAP19D - chrX 20494006 intron RhoGAP19D - chrX 20494099 intron RhoGAP19D - chrX_6_20490001 chrX_20490001 RAL-385 1299 chrX 20517232 20517248 chrX 20517338 20517353 6 105 4.0 1.0 2.5 1.7 121 chrX 20517232 intron Tak1 - chrX 20517292 intron Tak1 - chrX 20517353 intron Tak1 - chrX_6_20515001 chrX_20515001 RAL-385 1300 chrX 20662291 20662341 chrX 20662394 20662394 4 90 1.5 0.0 0.8 2.2 103 chrX 20662291 intron CG1835 + chrX 20662342 intron CG1835 + chrX 20662394 intron CG1835 + chrX_4_20660001 chrX_20660001 RAL-385 1301 chrX 20713904 20713923 chrX 20714007 20714026 4 102 1.0 0.0 0.5 2.7 122 chrX 20713904 intergenic not near genes chrX 20713965 intergenic not near genes chrX 20714026 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-385 1302 chrX 20940724 20940742 chrX 20942203 20942214 hobo 5 1479 1.5 4.0 2.8 1.3 1490 chrX 20940724 intergenic not near genes chrX 20941469 intergenic not near genes chrX 20942214 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-385 1303 chrX 21022218 21022229 chrX 21022401 21022418 4 186 2.0 0.0 1.0 2.0 200 chrX 21022218 intergenic not near genes chrX 21022318 intergenic not near genes chrX 21022418 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-385 1304 chrX 21061868 21061896 chrX 21062360 21062401 roo 6 500 1.0 4.0 2.5 1.7 533 chrX 21061868 intron bves + chrX 21062134 intron bves + chrX 21062401 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-385 1305 chrX 21076335 21076354 chrX 21076433 21076451 5 98 3.5 0.0 1.8 1.8 116 chrX 21076335 intron bves + chrX 21076393 intron bves + chrX 21076451 intron bves + chrX_5_21075001 chrX_21075001 RAL-385 1306 chrX 21086129 21086164 chrX 21087177 21087213 jockey 6 1040 2.0 1.5 1.8 2.1 1084 chrX 21086129 intergenic not near genes chrX 21086671 intergenic not near genes chrX 21087213 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-385 1307 chrX 21268075 21268086 chrX 21268175 21268185 4 100 0.0 1.0 0.5 2.7 110 chrX 21268075 intron CG32521 - chrX 21268130 intron CG32521 - chrX 21268185 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-385 1308 chrX 21303193 21303228 chrX 21303293 21303327 4 96 0.5 1.0 0.8 2.2 134 chrX 21303193 intron CG1718 - chrX 21303260 intron CG1718 - chrX 21303327 intron CG1718 - chrX_4_21300001 chrX_21300001 RAL-385 1309 chrX 21328096 21328144 chrX 21328227 21328275 18 130 4.0 1.0 2.5 5.1 179 chrX 21328096 3` UTR CG1486 + chrX 21328186 intergenic CG1486 +,tty - chrX 21328275 intergenic CG1486 +,tty - chrX_18_21325001 chrX_21325001 RAL-385 1310 chrX 21351144 21351150 chrX 21351206 21351248 4 89 4.5 3.5 4.0 0.8 104 chrX 21351144 intron sol + chrX 21351196 intron sol + chrX 21351248 intron sol + chrX_4_21350001 chrX_21350001 RAL-385 1311 chrX 21410629 21410659 chrX 21410727 21410757 4 98 0.5 2.0 1.2 1.8 128 chrX 21410629 intergenic CR45003 - chrX 21410693 intergenic CR45003 - chrX 21410757 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-385 1312 chrX 21419198 21419242 chrX 21419303 21419347 6 102 2.5 5.5 4.0 1.2 149 chrX 21419198 intergenic not near genes chrX 21419272 intergenic not near genes chrX 21419347 intergenic not near genes chrX_6_21415001 chrX_21415001 RAL-385 1313 chrX 21455198 21455234 chrX 21455392 21455441 5 198 2.0 0.0 1.0 2.5 243 chrX 21455198 intron CG42343 - chrX 21455320 intron CG42343 - chrX 21455441 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-385 1314 chrX 21458706 21458724 chrX 21464126 21464180 Ivk 6 5444 0.5 4.0 2.2 1.9 5474 chrX 21458706 intergenic not near genes chrX 21461443 intergenic not near genes chrX 21464180 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-385 1315 chrX 21668250 21668288 chrX 21668340 21668393 6 102 0.5 1.0 0.8 3.3 143 chrX 21668250 intergenic not near genes chrX 21668322 intergenic not near genes chrX 21668393 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-385 1316 chrX 22448253 22448294 chrX 22448412 22448428 13 156 0.5 1.5 1.0 6.5 175 chrX 22448253 intron CG14615 - chrX 22448340 intron CG14615 - chrX 22448428 intron CG14615 - chrX_13_22445001 chrX_22445001 RAL-385 1317 chrX 22478875 22478897 chrX 22479028 22479045 8 149 0.0 4.0 2.0 2.7 170 chrX 22478875 intron CG12576 - chrX 22478960 intron CG12576 - chrX 22479045 intron CG12576 - chrX_8_22475001 chrX_22475001 RAL-385 1318 chrX 22522617 22522655 chrX 22525457 22525459 NOF 4 2827 2.0 0.5 1.2 1.8 2842 chrX 22522617 intron CG17600 + chrX 22524038 intron CG17600 + chrX 22525459 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-385 1319 chrX 22660547 22660604 chrX 22660651 22660708 5 100 1.0 0.0 0.5 3.3 161 chrX 22660547 intron CR44997 + chrX 22660628 intron CR44997 + chrX 22660708 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-385 1320 chrX 22982838 22982857 chrX 22983023 22983060 10 198 5.5 3.0 4.2 1.9 222 chrX 22982838 intron,intron stnA -,stnB - chrX 22982949 intron,intron stnA -,stnB - chrX 22983060 intron,intron stnA -,stnB - chrX_10_22980001 chrX_22980001 RAL-385 1321 chrX 22996298 22996340 chrX 23003552 23003557 roo 9 7241 2.0 2.5 2.2 2.8 7259 chrX 22996298 intron,intron stnA -,stnB - chrX 22999928 intron,intron stnA -,stnB - chrX 23003557 intron,intron stnA -,stnB - chrX_9_22995001 chrX_22995001 RAL-385