SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47423	47464	chr2L	52574	52618	jockey	18	5155	19.0	11.0	15.0	1.1	5195	chr2L	47423	intron	Cda5 -	chr2L	50020	intron	Cda5 -	chr2L	52618	intron	Cda5 -	chr2L_18_50001	chr2L_50001	RAL-382
3	chr2L	47465	47486	chr2L	52562	52600	jockey	13	5137	14.0	6.5	10.2	1.2	5135	chr2L	47465	intron	Cda5 -	chr2L	50032	intron	Cda5 -	chr2L	52600	intron	Cda5 -	chr2L_13_50001	chr2L_50001	RAL-382
14	chr2L	347840	347903	chr2L	355385	355453	blood	29	7548	8.0	5.5	6.8	3.7	7613	chr2L	347840	3` UTR	Plc21C +	chr2L	351646	intron	Plc21C +	chr2L	355453	3` UTR	Plc21C +	chr2L_29_350001	chr2L_350001	RAL-382
20	chr2L	686922	686923	chr2L	695981	696013	roo	4	9082	8.0	11.5	9.8	0.4	9091	chr2L	686922	intron	ds -	chr2L	691468	intron	ds -	chr2L	696013	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-382
21	chr2L	686924	686941	chr2L	695968	696031	roo	7	9083	8.0	8.5	8.2	0.8	9107	chr2L	686924	intron	ds -	chr2L	691478	intron	ds -	chr2L	696031	intron	ds -	chr2L_7_690001	chr2L_690001	RAL-382
24	chr2L	770434	770492	chr2L	772250	772322	Bari1	24	1822	9.0	5.5	7.2	2.9	1888	chr2L	770434	intergenic	not near genes	chr2L	771378	intergenic	not near genes	chr2L	772322	intergenic	CR44614 +	chr2L_24_770001	chr2L_770001	RAL-382
31	chr2L	976839	976913	chr2L	984525	984599	roo	23	7685	11.0	6.5	8.8	2.3	7760	chr2L	976839	intergenic	not near genes	chr2L	980719	intergenic	not near genes	chr2L	984599	intergenic	not near genes	chr2L_23_980001	chr2L_980001	RAL-382
32	chr2L	996699	996708	chr2L	1005844	1005853	roo	5	9145	6.5	4.5	5.5	0.8	9154	chr2L	996699	intergenic	not near genes	chr2L	1001276	intergenic	not near genes	chr2L	1005853	intergenic	not near genes	chr2L_5_1000001	chr2L_1000001	RAL-382
42	chr2L	1220088	1220113	chr2L	1227604	1227629	blood	12	7516	17.5	7.5	12.5	0.9	7541	chr2L	1220088	intron	CG42329 +	chr2L	1223858	intron	CG42329 +	chr2L	1227629	intron	CG42329 +	chr2L_12_1220001	chr2L_1220001	RAL-382
43	chr2L	1220121	1220140	chr2L	1227602	1227656	blood	10	7511	10.5	7.5	9.0	1.0	7535	chr2L	1220121	intron	CG42329 +	chr2L	1223888	intron	CG42329 +	chr2L	1227656	intron	CG42329 +	chr2L_10_1220001	chr2L_1220001	RAL-382
44	chr2L	1220142	1220156	chr2L	1227598	1227672	blood	7	7507	9.0	7.5	8.2	0.8	7530	chr2L	1220142	intron	CG42329 +	chr2L	1223907	intron	CG42329 +	chr2L	1227672	intron	CG42329 +	chr2L_7_1220001	chr2L_1220001	RAL-382
49	chr2L	1570645	1570713	chr2L	1573567	1573635	F-element	23	2922	9.0	6.0	7.5	2.7	2990	chr2L	1570645	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573635	intron	haf +	chr2L_23_1570001	chr2L_1570001	RAL-382
51	chr2L	1618216	1618231	chr2L	1618596	1618611	jockey	6	380	8.5	3.0	5.8	0.9	395	chr2L	1618216	intergenic	CR44603 -	chr2L	1618414	intergenic	CR44603 -	chr2L	1618611	intergenic	CR44603 -	chr2L_6_1615001	chr2L_1615001	RAL-382
55	chr2L	1678929	1678993	chr2L	1686444	1686508	blood	31	7515	9.5	7.5	8.5	3.3	7579	chr2L	1678929	intron	chinmo +	chr2L	1682718	intron	chinmo +	chr2L	1686508	intron	chinmo +	chr2L_31_1680001	chr2L_1680001	RAL-382
58	chr2L	1711309	1711380	chr2L	1711683	1711754	mdg3	21	370	10.5	5.0	7.8	2.4	445	chr2L	1711309	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711754	exon	frtz -	chr2L_21_1710001	chr2L_1710001	RAL-382
69	chr2L	2100377	2100401	chr2L	2109548	2109551	roo	9	9180	11.0	14.5	12.8	0.7	9174	chr2L	2100377	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-382
70	chr2L	2112064	2112136	chr2L	2119775	2119783	opus	20	7700	5.0	7.0	6.0	2.9	7719	chr2L	2112064	intergenic	not near genes	chr2L	2115924	intergenic	not near genes	chr2L	2119783	intergenic	not near genes	chr2L_20_2115001	chr2L_2115001	RAL-382
77	chr2L	2294020	2294073	chr2L	2299250	2299302	copia	12	5232	3.5	8.5	6.0	1.7	5282	chr2L	2294020	intergenic	not near genes	chr2L	2296661	intergenic	not near genes	chr2L	2299302	intergenic	not near genes	chr2L_12_2295001	chr2L_2295001	RAL-382
86	chr2L	2565506	2565563	chr2L	2571629	2571686	297	16	6122	6.5	11.5	9.0	1.6	6180	chr2L	2565506	exon	Cyp309a2 -	chr2L	2568596	intron	Cyp309a2 -	chr2L	2571686	exon	Cyp309a2 -	chr2L_16_2565001	chr2L_2565001	RAL-382
88	chr2L	2661163	2661226	chr2L	2663046	2663099	I-element	17	1864	3.5	7.5	5.5	2.6	1936	chr2L	2661163	intergenic	not near genes	chr2L	2662131	intergenic	not near genes	chr2L	2663099	intergenic	not near genes	chr2L_17_2660001	chr2L_2660001	RAL-382
94	chr2L	2772578	2772620	chr2L	2779210	2779214	297	19	6627	2.5	15.5	9.0	1.9	6636	chr2L	2772578	3` UTR	Syt1 -	chr2L	2775896	intron	Syt1 -	chr2L	2779214	3` UTR	Syt1 -	chr2L_19_2775001	chr2L_2775001	RAL-382
100	chr2L	2933251	2933324	chr2L	2935478	2935551	pogo	27	2226	3.0	6.0	4.5	4.9	2300	chr2L	2933251	intron	lilli +	chr2L	2934401	intron	lilli +	chr2L	2935551	intron	lilli +	chr2L_27_2930001	chr2L_2930001	RAL-382
104	chr2L	3072988	3073055	chr2L	3078241	3078308	copia	28	5253	7.5	10.0	8.8	2.9	5320	chr2L	3072988	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078308	intron	toc -	chr2L_28_3075001	chr2L_3075001	RAL-382
109	chr2L	3202690	3202738	chr2L	3210169	3210217	mdg1	11	7479	8.5	0.0	4.2	2.1	7527	chr2L	3202690	intergenic	not near genes	chr2L	3206454	intergenic	not near genes	chr2L	3210217	intergenic	CR45336 +	chr2L_11_3205001	chr2L_3205001	RAL-382
111	chr2L	3251466	3251518	chr2L	3259078	3259133	springer	23	7613	9.0	14.5	11.8	1.8	7667	chr2L	3251466	intergenic	not near genes	chr2L	3255300	intergenic	not near genes	chr2L	3259133	intergenic	not near genes	chr2L_23_3255001	chr2L_3255001	RAL-382
118	chr2L	3388558	3388625	chr2L	3388849	3388916	pogo	20	290	8.0	10.0	9.0	2.0	358	chr2L	3388558	intergenic	CG42460 -	chr2L	3388737	intergenic	CG42460 -	chr2L	3388916	intergenic	CG42460 -,CR44791 +	chr2L_20_3385001	chr2L_3385001	RAL-382
124	chr2L	3649734	3649805	chr2L	3654991	3655057	copia	26	5253	2.5	7.5	5.0	4.3	5323	chr2L	3649734	intron	for -	chr2L	3652396	intron	for -	chr2L	3655057	intron	for -	chr2L_26_3650001	chr2L_3650001	RAL-382
148	chr2L	4065999	4066052	chr2L	4068874	4068926	Juan	23	2873	11.0	15.0	13.0	1.6	2927	chr2L	4065999	intron	ed +	chr2L	4067462	intron	ed +	chr2L	4068926	intron	ed +	chr2L_23_4065001	chr2L_4065001	RAL-382
164	chr2L	4601657	4601725	chr2L	4609148	4609216	mdg1	21	7490	8.0	5.5	6.8	2.7	7559	chr2L	4601657	intron	dp -	chr2L	4605436	intron	dp -	chr2L	4609216	intron	dp -	chr2L_21_4605001	chr2L_4605001	RAL-382
174	chr2L	4918128	4918188	chr2L	4923251	4923311	jockey	34	5123	11.5	13.0	12.2	2.6	5183	chr2L	4918128	intron	hoe1 -	chr2L	4920720	intron	hoe1 -	chr2L	4923311	intron	hoe1 -	chr2L_34_4920001	chr2L_4920001	RAL-382
176	chr2L	4953479	4953492	chr2L	4953770	4953777	pogo	4	290	12.5	0.0	6.2	0.6	298	chr2L	4953479	intergenic	Jon25Bii -	chr2L	4953628	intergenic	Jon25Bii -	chr2L	4953777	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-382
183	chr2L	5342725	5342791	chr2L	5345155	5345221	Doc	35	2429	10.0	1.0	5.5	5.4	2496	chr2L	5342725	intergenic	CG12512 -	chr2L	5343973	intergenic	not near genes	chr2L	5345221	intergenic	not near genes	chr2L_35_5340001	chr2L_5340001	RAL-382
203	chr2L	5827671	5827729	chr2L	5836729	5836787	roo	25	9057	8.5	10.5	9.5	2.4	9116	chr2L	5827671	intron	TrissinR +	chr2L	5832229	intron	TrissinR +	chr2L	5836787	intron	TrissinR +	chr2L_25_5830001	chr2L_5830001	RAL-382
218	chr2L	6279590	6279632	chr2L	6279719	6279761	INE-1	24	128	19.5	5.0	12.2	1.8	171	chr2L	6279590	intron	Ddr +	chr2L	6279676	intron	Ddr +	chr2L	6279761	intron	Ddr +	chr2L_24_6275001	chr2L_6275001	RAL-382
221	chr2L	6363113	6363119	chr2L	6366089	6366095	Burdock	5	2976	18.5	6.5	12.5	0.4	2982	chr2L	6363113	intergenic	not near genes	chr2L	6364604	intergenic	not near genes	chr2L	6366095	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	RAL-382
222	chr2L	6363120	6363183	chr2L	6366082	6366099	Burdock	19	2970	8.0	5.5	6.8	2.4	2979	chr2L	6363120	intergenic	not near genes	chr2L	6364610	intergenic	not near genes	chr2L	6366099	intergenic	not near genes	chr2L_19_6360001	chr2L_6360001	RAL-382
225	chr2L	6426814	6426840	chr2L	6445124	6445150	roo	8	18309	0.0	10.5	5.2	1.3	18336	chr2L	6426814	3` UTR	CG9527 -	chr2L	6435982	intron	CG9527 -	chr2L	6445150	exon	CG9527 -	chr2L_8_6435001	chr2L_6435001	RAL-382
226	chr2L	6426844	6426878	chr2L	6445118	6445188	roo	18	18305	0.0	9.5	4.8	3.1	18344	chr2L	6426844	3` UTR	CG9527 -	chr2L	6436016	intron	CG9527 -	chr2L	6445188	exon	CG9527 -	chr2L_18_6435001	chr2L_6435001	RAL-382
240	chr2L	6876751	6876767	chr2L	6882987	6883007	diver	4	6236	26.0	12.5	19.2	0.2	6256	chr2L	6876751	intron	Nlg2 +	chr2L	6879879	intron	Nlg2 +	chr2L	6883007	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-382
241	chr2L	6876768	6876810	chr2L	6882970	6883014	diver	22	6226	13.5	10.0	11.8	1.7	6246	chr2L	6876768	intron	Nlg2 +	chr2L	6879891	intron	Nlg2 +	chr2L	6883014	intron	Nlg2 +	chr2L_22_6875001	chr2L_6875001	RAL-382
245	chr2L	6991397	6991431	chr2L	6998552	6998583	HMS-Beagle	10	7165	15.5	4.0	9.8	0.9	7186	chr2L	6991397	intron	uif -	chr2L	6994990	intron	uif -	chr2L	6998583	intron	uif -	chr2L_10_6990001	chr2L_6990001	RAL-382
259	chr2L	7343306	7343341	chr2L	7350468	7350484	roo	11	7159	7.5	9.0	8.2	1.2	7178	chr2L	7343306	intron	Wnt6 +	chr2L	7346895	intron	Wnt6 +	chr2L	7350484	intron	Wnt6 +	chr2L_11_7345001	chr2L_7345001	RAL-382
266	chr2L	7579157	7579233	chr2L	7579398	7579462	BS	36	235	9.5	0.0	4.8	6.2	305	chr2L	7579157	intergenic	RapGAP1 -	chr2L	7579310	intergenic	RapGAP1 -	chr2L	7579462	intergenic	RapGAP1 -	chr2L_36_7575001	chr2L_7575001	RAL-382
282	chr2L	7977046	7977103	chr2L	7984066	7984127	297	26	7020	8.5	7.0	7.8	3.0	7081	chr2L	7977046	intron	Snoo -	chr2L	7980586	intron	Snoo -	chr2L	7984127	intron,5` UTR	Snoo -,CG7231 +	chr2L_26_7980001	chr2L_7980001	RAL-382
284	chr2L	8013565	8013582	chr2L	8018820	8018837	copia	9	5254	23.5	0.0	11.8	0.7	5272	chr2L	8013565	intron	Tg +	chr2L	8016201	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_9_8015001	chr2L_8015001	RAL-382
285	chr2L	8013594	8013644	chr2L	8023580	8023630	copia	16	9986	9.5	8.0	8.8	1.6	10036	chr2L	8013594	intron	Tg +	chr2L	8018612	intron	Tg +	chr2L	8023630	intron	Tg +	chr2L_16_8015001	chr2L_8015001	RAL-382
295	chr2L	8452377	8452446	chr2L	8461598	8461667	roo	35	9220	11.0	9.5	10.2	3.1	9290	chr2L	8452377	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461667	intron	fu12 -	chr2L_35_8455001	chr2L_8455001	RAL-382
302	chr2L	8723077	8723145	chr2L	8731498	8731524	Tirant	20	8421	11.0	4.0	7.5	2.4	8447	chr2L	8723077	intron	raw -	chr2L	8727300	intron	raw -	chr2L	8731524	intron	raw -	chr2L_20_8725001	chr2L_8725001	RAL-382
311	chr2L	9000242	9000312	chr2L	9007801	9007898	roo	23	7561	9.5	0.5	5.0	3.8	7656	chr2L	9000242	intergenic	Try29F +	chr2L	9004070	intergenic	not near genes	chr2L	9007898	intergenic	not near genes	chr2L_23_9000001	chr2L_9000001	RAL-382
316	chr2L	9217943	9218001	chr2L	9222780	9222846	Doc	13	4841	10.0	3.0	6.5	1.7	4903	chr2L	9217943	intron	tai +	chr2L	9220394	intron	tai +	chr2L	9222846	intron	tai +	chr2L_13_9220001	chr2L_9220001	RAL-382
326	chr2L	9393454	9393524	chr2L	9396471	9396515	jockey	29	3015	6.0	6.0	6.0	4.1	3061	chr2L	9393454	intron	Shawl -	chr2L	9394984	intron	Shawl -	chr2L	9396515	intron	Shawl -	chr2L_29_9390001	chr2L_9390001	RAL-382
342	chr2L	9973695	9973755	chr2L	9980856	9980913	HMS-Beagle	27	7167	7.0	9.5	8.2	2.9	7218	chr2L	9973695	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980913	intergenic	not near genes	chr2L_27_9975001	chr2L_9975001	RAL-382
347	chr2L	10138153	10138192	chr2L	10143449	10143488	Rt1c	16	5295	12.5	14.0	13.2	1.1	5335	chr2L	10138153	intron	CG44153 -	chr2L	10140820	intron	CG44153 -	chr2L	10143488	intron	CG44153 -	chr2L_16_10140001	chr2L_10140001	RAL-382
349	chr2L	10156288	10156315	chr2L	10163808	10163835	blood	11	7520	18.0	12.5	15.2	0.7	7547	chr2L	10156288	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160062	intron	CG44153 -	chr2L	10163835	intron	CG44153 -	chr2L_11_10160001	chr2L_10160001	RAL-382
350	chr2L	10156321	10156349	chr2L	10163802	10163869	blood	10	7513	10.0	11.0	10.5	0.9	7548	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160095	intron	CG44153 -	chr2L	10163869	intron	CG44153 -	chr2L_10_10160001	chr2L_10160001	RAL-382
369	chr2L	10592798	10592865	chr2L	10600510	10600577	opus	25	7712	9.5	10.0	9.8	2.3	7779	chr2L	10592798	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600577	intron	Trim9 +	chr2L_25_10595001	chr2L_10595001	RAL-382
383	chr2L	10862833	10862865	chr2L	10864466	10864522	Rt1c	6	1655	8.0	9.0	8.5	0.6	1689	chr2L	10862833	3` UTR	CR43807 -	chr2L	10863678	intron	CR43807 -	chr2L	10864522	3` UTR	CR43807 -	chr2L_6_10860001	chr2L_10860001	RAL-382
384	chr2L	10876527	10876569	chr2L	10883635	10883677	297	10	7104	6.5	11.5	9.0	1.0	7150	chr2L	10876527	intergenic	not near genes	chr2L	10880102	intergenic	not near genes	chr2L	10883677	intergenic	not near genes	chr2L_10_10880001	chr2L_10880001	RAL-382
385	chr2L	10946913	10946971	chr2L	10956178	10956221	roo	8	9263	7.5	6.0	6.8	1.0	9308	chr2L	10946913	intron	dpr2 -	chr2L	10951567	intron	dpr2 -	chr2L	10956221	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-382
391	chr2L	11315225	11315271	chr2L	11317679	11317713	G2	11	2451	7.0	7.0	7.0	1.4	2488	chr2L	11315225	intergenic	not near genes	chr2L	11316469	intergenic	not near genes	chr2L	11317713	intergenic	not near genes	chr2L_11_11315001	chr2L_11315001	RAL-382
401	chr2L	11540548	11540603	chr2L	11548000	11548055	Tabor	25	7452	15.0	13.0	14.0	1.7	7507	chr2L	11540548	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548055	intergenic	not near genes	chr2L_25_11540001	chr2L_11540001	RAL-382
403	chr2L	11563597	11563629	chr2L	11568851	11568882	copia	7	5251	11.5	9.5	10.5	0.6	5285	chr2L	11563597	intergenic	not near genes	chr2L	11566240	intergenic	not near genes	chr2L	11568882	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-382
404	chr2L	11563639	11563659	chr2L	11568842	11568913	copia	11	5241	6.0	7.0	6.5	1.5	5274	chr2L	11563639	intergenic	not near genes	chr2L	11566276	intergenic	not near genes	chr2L	11568913	intergenic	not near genes	chr2L_11_11565001	chr2L_11565001	RAL-382
408	chr2L	11614010	11614033	chr2L	11615555	11615578	hopper2	5	1544	16.0	7.5	11.8	0.4	1568	chr2L	11614010	intron	kek2 +	chr2L	11614794	intron	kek2 +	chr2L	11615578	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-382
409	chr2L	11614037	11614075	chr2L	11615545	11615618	hopper2	9	1525	8.5	6.5	7.5	1.1	1581	chr2L	11614037	intron	kek2 +	chr2L	11614828	intron	kek2 +	chr2L	11615618	intron	kek2 +	chr2L_9_11610001	chr2L_11610001	RAL-382
414	chr2L	11713466	11713530	chr2L	11720977	11721048	blood	31	7514	8.5	6.5	7.5	3.6	7582	chr2L	11713466	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721048	intergenic	CR44143 +	chr2L_31_11715001	chr2L_11715001	RAL-382
425	chr2L	12067292	12067352	chr2L	12074393	12074438	297	35	7101	13.0	9.5	11.2	2.9	7146	chr2L	12067292	intergenic	not near genes	chr2L	12070865	intergenic	not near genes	chr2L	12074438	intergenic	not near genes	chr2L_35_12070001	chr2L_12070001	RAL-382
450	chr2L	12558271	12558347	chr2L	12565449	12565526	HMS-Beagle	37	7177	9.5	10.0	9.8	3.4	7255	chr2L	12558271	intergenic	not near genes	chr2L	12561898	intergenic	not near genes	chr2L	12565526	intergenic	not near genes	chr2L_37_12560001	chr2L_12560001	RAL-382
453	chr2L	12731015	12731081	chr2L	12735832	12735898	F-element	27	4816	7.5	11.0	9.2	2.6	4883	chr2L	12731015	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735898	intron	MRP +	chr2L_27_12730001	chr2L_12730001	RAL-382
454	chr2L	12739136	12739195	chr2L	12743967	12744020	Doc	20	4829	7.0	13.0	10.0	1.8	4884	chr2L	12739136	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744020	exon	MRP +	chr2L_20_12740001	chr2L_12740001	RAL-382
455	chr2L	12763782	12763868	chr2L	12764044	12764115	BS	18	261	0.0	0.0	0.0	18.0	333	chr2L	12763782	intergenic	not near genes	chr2L	12763948	intergenic	not near genes	chr2L	12764115	intergenic	not near genes	chr2L_18_12760001	chr2L_12760001	RAL-382
457	chr2L	12781759	12781814	chr2L	12789259	12789314	Quasimodo	22	7499	15.0	12.5	13.8	1.5	7555	chr2L	12781759	intergenic	not near genes	chr2L	12785536	intergenic	not near genes	chr2L	12789314	intergenic	not near genes	chr2L_22_12785001	chr2L_12785001	RAL-382
458	chr2L	12791569	12791622	chr2L	12795294	12795347	F-element	23	3724	7.0	18.0	12.5	1.7	3778	chr2L	12791569	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795347	intergenic	not near genes	chr2L_23_12790001	chr2L_12790001	RAL-382
460	chr2L	12861652	12861724	chr2L	12863169	12863219	hobo	19	1509	6.0	4.0	5.0	3.2	1567	chr2L	12861652	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863219	intergenic	not near genes	chr2L_19_12860001	chr2L_12860001	RAL-382
461	chr2L	12893996	12894036	chr2L	12895508	12895508	hobo	7	1506	11.0	12.5	11.8	0.5	1512	chr2L	12893996	intergenic	not near genes	chr2L	12894752	intergenic	not near genes	chr2L	12895508	intergenic	not near genes	chr2L_7_12890001	chr2L_12890001	RAL-382
463	chr2L	12933806	12933878	chr2L	12941322	12941380	blood	31	7514	11.5	6.5	9.0	3.1	7574	chr2L	12933806	intergenic	not near genes	chr2L	12937593	intergenic	not near genes	chr2L	12941380	intergenic	not near genes	chr2L_31_12935001	chr2L_12935001	RAL-382
472	chr2L	13405611	13405670	chr2L	13410454	13410517	Doc	20	4846	5.5	7.0	6.2	2.8	4906	chr2L	13405611	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410517	exon	CG7110 +	chr2L_20_13405001	chr2L_13405001	RAL-382
474	chr2L	13449423	13449486	chr2L	13456909	13456972	Quasimodo	37	7486	10.0	12.0	11.0	3.1	7549	chr2L	13449423	intron,intron	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456972	intron	CG42784 +	chr2L_37_13450001	chr2L_13450001	RAL-382
476	chr2L	13481410	13481465	chr2L	13482067	13482122	jockey	25	656	16.5	9.0	12.8	1.8	712	chr2L	13481410	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482122	intron	CG42784 +	chr2L_25_13480001	chr2L_13480001	RAL-382
477	chr2L	13522242	13522290	chr2L	13527590	13527613	Transpac	15	5348	2.5	12.0	7.2	1.8	5371	chr2L	13522242	intron	B4 -	chr2L	13524928	intron	B4 -	chr2L	13527613	intron	B4 -	chr2L_15_13520001	chr2L_13520001	RAL-382
479	chr2L	13560366	13560420	chr2L	13565235	13565289	F-element	20	4868	8.0	0.0	4.0	4.0	4923	chr2L	13560366	intron	kuz +	chr2L	13562828	intron	kuz +	chr2L	13565289	intron	kuz +	chr2L_20_13560001	chr2L_13560001	RAL-382
490	chr2L	13761770	13761798	chr2L	13762931	13762933	Doc	8	1157	15.0	7.0	11.0	0.7	1163	chr2L	13761770	intron	TM9SF4 +	chr2L	13762352	intron	TM9SF4 +	chr2L	13762933	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	RAL-382
491	chr2L	13761802	13761828	chr2L	13762927	13762989	Doc	5	1148	5.5	6.5	6.0	0.7	1187	chr2L	13761802	intron	TM9SF4 +	chr2L	13762396	intron	TM9SF4 +	chr2L	13762989	intron	TM9SF4 +	chr2L_5_13760001	chr2L_13760001	RAL-382
493	chr2L	13853045	13853103	chr2L	13862245	13862303	roo	19	9198	9.0	9.0	9.0	1.9	9258	chr2L	13853045	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862303	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	RAL-382
514	chr2L	14465551	14465616	chr2L	14469064	14469129	hopper2	17	3513	1.5	10.0	5.8	2.5	3578	chr2L	14465551	intergenic	not near genes	chr2L	14467340	intergenic	not near genes	chr2L	14469129	intergenic	not near genes	chr2L_17_14465001	chr2L_14465001	RAL-382
523	chr2L	14618873	14618887	chr2L	14619304	14619318	jockey	7	431	9.5	12.5	11.0	0.6	445	chr2L	14618873	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619096	intron	osp -	chr2L	14619318	intron	osp -	chr2L_7_14615001	chr2L_14615001	RAL-382
531	chr2L	14803834	14803895	chr2L	14809087	14809148	copia	24	5252	8.0	11.5	9.8	2.2	5314	chr2L	14803834	intergenic	not near genes	chr2L	14806491	intergenic	not near genes	chr2L	14809148	intergenic	not near genes	chr2L_24_14805001	chr2L_14805001	RAL-382
534	chr2L	14889905	14889984	chr2L	14890380	14890422	jockey	27	471	2.5	6.5	4.5	4.9	517	chr2L	14889905	intergenic	not near genes	chr2L	14890164	intergenic	not near genes	chr2L	14890422	intergenic	not near genes	chr2L_27_14890001	chr2L_14890001	RAL-382
536	chr2L	14984339	14984378	chr2L	14991991	14992030	opus	15	7648	10.0	7.5	8.8	1.5	7691	chr2L	14984339	intron	mol -	chr2L	14988184	intron	mol -	chr2L	14992030	intron	mol -	chr2L_15_14985001	chr2L_14985001	RAL-382
537	chr2L	14984379	14984405	chr2L	14991985	14992025	opus	14	7643	7.5	7.0	7.2	1.7	7646	chr2L	14984379	intron	mol -	chr2L	14988202	intron	mol -	chr2L	14992025	intron	mol -	chr2L_14_14985001	chr2L_14985001	RAL-382
547	chr2L	15249732	15249739	chr2L	15249865	15249872	INE-1	4	133	19.5	16.0	17.8	0.2	140	chr2L	15249732	intron	dao +	chr2L	15249802	intron	dao +	chr2L	15249872	intron	dao +	chr2L_4_15245001	chr2L_15245001	RAL-382
554	chr2L	15446007	15446031	chr2L	15453526	15453550	blood	10	7519	18.5	10.5	14.5	0.6	7543	chr2L	15446007	intergenic	not near genes	chr2L	15449778	intergenic	not near genes	chr2L	15453550	intergenic	not near genes	chr2L_10_15445001	chr2L_15445001	RAL-382
555	chr2L	15446032	15446067	chr2L	15453525	15453586	blood	19	7517	13.0	10.5	11.8	1.5	7554	chr2L	15446032	intergenic	not near genes	chr2L	15449809	intergenic	not near genes	chr2L	15453586	intergenic	not near genes	chr2L_19_15445001	chr2L_15445001	RAL-382
564	chr2L	15586369	15586427	chr2L	15593471	15593529	297	24	7101	10.0	9.5	9.8	2.2	7160	chr2L	15586369	intergenic	not near genes	chr2L	15589949	intergenic	not near genes	chr2L	15593529	intergenic	not near genes	chr2L_24_15585001	chr2L_15585001	RAL-382
571	chr2L	15826844	15826888	chr2L	15829288	15829332	Tabor	21	2443	11.0	9.0	10.0	1.9	2488	chr2L	15826844	intergenic	not near genes	chr2L	15828088	intergenic	not near genes	chr2L	15829332	intergenic	not near genes	chr2L_21_15825001	chr2L_15825001	RAL-382
574	chr2L	15955984	15955997	chr2L	15957501	15957514	hobo	9	1516	16.5	10.5	13.5	0.6	1530	chr2L	15955984	intron	beat-Ib -	chr2L	15956749	intron	beat-Ib -	chr2L	15957514	intron	beat-Ib -	chr2L_9_15955001	chr2L_15955001	RAL-382
575	chr2L	15955998	15956010	chr2L	15957499	15957527	hobo	8	1515	13.5	9.5	11.5	0.6	1529	chr2L	15955998	intron	beat-Ib -	chr2L	15956762	intron	beat-Ib -	chr2L	15957527	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-382
576	chr2L	15956016	15956049	chr2L	15957493	15957566	hobo	19	1514	7.5	9.0	8.2	2.1	1550	chr2L	15956016	intron	beat-Ib -	chr2L	15956791	intron	beat-Ib -	chr2L	15957566	intron	beat-Ib -	chr2L_19_15955001	chr2L_15955001	RAL-382
583	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	44	145889	25.5	31.0	28.2	1.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_44_16140001	chr2L_16140001	RAL-382
585	chr2L	16141126	16141183	chr2L	16146383	16146440	copia	26	5255	9.5	9.5	9.5	2.5	5314	chr2L	16141126	intergenic	not near genes	chr2L	16143783	intergenic	not near genes	chr2L	16146440	intergenic	not near genes	chr2L_26_16140001	chr2L_16140001	RAL-382
587	chr2L	16153693	16153749	chr2L	16160811	16160867	297	27	7117	9.5	5.5	7.5	3.2	7174	chr2L	16153693	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160867	intergenic	not near genes	chr2L_27_16155001	chr2L_16155001	RAL-382
589	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	46	145889	25.5	31.0	28.2	1.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_46_16140001	chr2L_16140001	RAL-382
591	chr2L	16280239	16280284	chr2L	16281437	16281483	1360	17	1208	10.0	8.0	9.0	1.7	1244	chr2L	16280239	intron	crp -	chr2L	16280861	intron	crp -	chr2L	16281483	intron	crp -	chr2L_17_16280001	chr2L_16280001	RAL-382
600	chr2L	16511935	16511990	chr2L	16519112	16519167	HMS-Beagle	26	7176	7.5	8.0	7.8	3.0	7232	chr2L	16511935	intron	CG5953 -	chr2L	16515551	intron	CG5953 -	chr2L	16519167	intron	CG5953 -	chr2L_26_16515001	chr2L_16515001	RAL-382
611	chr2L	16852732	16852804	chr2L	16859923	16859971	Doc4-element	20	7190	40.0	12.0	26.0	0.7	7239	chr2L	16852732	intergenic	CG31810 -	chr2L	16856352	intron	CG31809 -	chr2L	16859971	intergenic	CG6012 -	chr2L_20_16855001	chr2L_16855001	RAL-382
614	chr2L	16958060	16958124	chr2L	16962898	16962962	Doc	39	4837	8.5	9.0	8.8	4.0	4902	chr2L	16958060	intergenic	not near genes	chr2L	16960511	intergenic	not near genes	chr2L	16962962	intergenic	not near genes	chr2L_39_16960001	chr2L_16960001	RAL-382
631	chr2L	17167520	17167590	chr2L	17167810	17167861	pogo	21	289	8.0	8.5	8.2	2.3	341	chr2L	17167520	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167690	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167861	intron,intron	CG34106 +,beat-IIIa +	chr2L_21_17165001	chr2L_17165001	RAL-382
633	chr2L	17199119	17199132	chr2L	17200636	17200649	hobo	7	1517	20.5	9.0	14.8	0.4	1530	chr2L	17199119	intron	beat-IIIc -	chr2L	17199884	intron	beat-IIIc -	chr2L	17200649	intron	beat-IIIc -	chr2L_7_17195001	chr2L_17195001	RAL-382
634	chr2L	17199133	17199192	chr2L	17200630	17200709	hobo	11	1515	8.5	7.5	8.0	1.2	1576	chr2L	17199133	intron	beat-IIIc -	chr2L	17199921	intron	beat-IIIc -	chr2L	17200709	intron	beat-IIIc -	chr2L_11_17195001	chr2L_17195001	RAL-382
636	chr2L	17273148	17273222	chr2L	17277980	17278039	F-element	16	4831	2.5	7.0	4.8	2.8	4891	chr2L	17273148	intergenic	not near genes	chr2L	17275594	intergenic	not near genes	chr2L	17278039	intergenic	not near genes	chr2L_16_17275001	chr2L_17275001	RAL-382
641	chr2L	17335560	17335578	chr2L	17337619	17337637	1360	8	2059	9.0	10.5	9.8	0.7	2077	chr2L	17335560	intergenic	not near genes	chr2L	17336598	intergenic	not near genes	chr2L	17337637	intergenic	not near genes	chr2L_8_17335001	chr2L_17335001	RAL-382
648	chr2L	17432025	17432040	chr2L	17432182	17432197	1360	6	157	0.0	26.0	13.0	0.4	172	chr2L	17432025	intron	Dif -	chr2L	17432111	intron	Dif -	chr2L	17432197	intron	Dif -	chr2L_6_17430001	chr2L_17430001	RAL-382
656	chr2L	17687470	17687518	chr2L	17692265	17692313	F-element	21	4795	8.0	10.5	9.2	2.1	4843	chr2L	17687470	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692313	intron	CadN -	chr2L_21_17685001	chr2L_17685001	RAL-382
657	chr2L	17727824	17727872	chr2L	17729340	17729364	hobo	18	1511	7.5	10.5	9.0	1.8	1540	chr2L	17727824	intron	CadN -	chr2L	17728594	intron	CadN -	chr2L	17729364	intron	CadN -	chr2L_18_17725001	chr2L_17725001	RAL-382
660	chr2L	17819896	17819941	chr2L	17825129	17825194	copia	5	5248	10.0	6.5	8.2	0.5	5298	chr2L	17819896	intron	CadN2 -	chr2L	17822545	intron	CadN2 -	chr2L	17825194	intron	CadN2 -	chr2L_5_17820001	chr2L_17820001	RAL-382
663	chr2L	17911918	17911983	chr2L	17914146	17914211	pogo	20	2225	7.5	5.0	6.2	2.8	2293	chr2L	17911918	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914211	intergenic	CG43271 -	chr2L_20_17910001	chr2L_17910001	RAL-382
665	chr2L	17951900	17951969	chr2L	17953417	17953486	hobo	30	1516	9.5	12.0	10.8	2.5	1586	chr2L	17951900	intergenic	CR44398 -,CR44397 -	chr2L	17952693	intergenic	not near genes	chr2L	17953486	intergenic	not near genes	chr2L_30_17950001	chr2L_17950001	RAL-382
666	chr2L	18051848	18051899	chr2L	18061030	18061096	roo	17	9191	6.5	9.0	7.8	1.9	9248	chr2L	18051848	intron	rdo +	chr2L	18056472	intron	rdo +	chr2L	18061096	intron	rdo +	chr2L_17_18055001	chr2L_18055001	RAL-382
681	chr2L	18407984	18408052	chr2L	18412818	18412894	Doc	22	4836	9.0	0.0	4.5	4.0	4910	chr2L	18407984	intergenic	not near genes	chr2L	18410439	intergenic	not near genes	chr2L	18412894	intergenic	not near genes	chr2L_22_18410001	chr2L_18410001	RAL-382
682	chr2L	18408053	18408057	chr2L	18412815	18412899	Doc	4	4822	8.5	0.0	4.2	0.8	4846	chr2L	18408053	intergenic	not near genes	chr2L	18410476	intergenic	not near genes	chr2L	18412899	intergenic	not near genes	chr2L_4_18410001	chr2L_18410001	RAL-382
707	chr2L	19147332	19147392	chr2L	19154410	19154477	297	25	7082	9.0	11.0	10.0	2.3	7145	chr2L	19147332	intron	brat +	chr2L	19150904	intron	brat +	chr2L	19154477	intron	brat +	chr2L_25_19150001	chr2L_19150001	RAL-382
713	chr2L	19344983	19345037	chr2L	19357242	19357280	blood	27	12258	11.0	10.5	10.8	2.3	12297	chr2L	19344983	intron	dnt -	chr2L	19351132	intron	dnt -	chr2L	19357280	intron	dnt -	chr2L_27_19350001	chr2L_19350001	RAL-382
730	chr2L	19620081	19620104	chr2L	19621086	19621143	jockey	10	1030	8.0	5.0	6.5	1.3	1062	chr2L	19620081	intron	Lar +	chr2L	19620612	intron	Lar +	chr2L	19621143	intron	Lar +	chr2L_10_19620001	chr2L_19620001	RAL-382
732	chr2L	19652522	19652598	chr2L	19674008	19674081	opus	33	21484	5.5	10.0	7.8	3.7	21559	chr2L	19652522	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674081	intron	Lar +	chr2L_33_19660001	chr2L_19660001	RAL-382
734	chr2L	19703498	19703528	chr2L	19712684	19712714	roo	12	9186	16.5	11.0	13.8	0.8	9216	chr2L	19703498	intron	Lar +	chr2L	19708106	intron	Lar +	chr2L	19712714	intron	Lar +	chr2L_12_19705001	chr2L_19705001	RAL-382
735	chr2L	19703537	19703561	chr2L	19712681	19712747	roo	16	9178	10.5	10.5	10.5	1.4	9210	chr2L	19703537	intron	Lar +	chr2L	19708142	intron	Lar +	chr2L	19712747	intron	Lar +	chr2L_16_19705001	chr2L_19705001	RAL-382
736	chr2L	19737357	19737360	chr2L	19740855	19740869	1360	4	3508	5.5	11.0	8.2	0.4	3512	chr2L	19737357	intergenic	Nf-YB +	chr2L	19739113	intergenic	not near genes	chr2L	19740869	intergenic	not near genes	chr2L_4_19735001	chr2L_19735001	RAL-382
737	chr2L	19737369	19737382	chr2L	19740846	19740901	1360	7	3504	2.5	9.5	6.0	1.0	3532	chr2L	19737369	intergenic	Nf-YB +	chr2L	19739135	intergenic	not near genes	chr2L	19740901	intergenic	not near genes	chr2L_7_19735001	chr2L_19735001	RAL-382
738	chr2L	19762776	19762828	chr2L	19763050	19763120	pogo	14	288	6.0	4.5	5.2	2.3	344	chr2L	19762776	exon	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763120	intron	fbp -	chr2L_14_19760001	chr2L_19760001	RAL-382
749	chr2L	20005829	20005861	chr2L	20010955	20010987	flea	14	5126	17.5	8.0	12.8	1.0	5158	chr2L	20005829	intron	CG43861 -	chr2L	20008408	intron	CG43861 -	chr2L	20010987	intron	CG43861 -	chr2L_14_20005001	chr2L_20005001	RAL-382
750	chr2L	20005863	20005894	chr2L	20010951	20011020	flea	19	5123	10.5	7.0	8.8	1.9	5157	chr2L	20005863	intron	CG43861 -	chr2L	20008442	intron	CG43861 -	chr2L	20011020	intron	CG43861 -	chr2L_19_20005001	chr2L_20005001	RAL-382
762	chr2L	20272079	20272142	chr2L	20282840	20282858	copia	37	10760	8.5	13.5	11.0	3.1	10779	chr2L	20272079	intergenic	not near genes	chr2L	20277468	intergenic	not near genes	chr2L	20282858	intergenic	not near genes	chr2L_37_20275001	chr2L_20275001	RAL-382
763	chr2L	20303161	20303183	chr2L	20310679	20310701	blood	8	7518	0.5	19.0	9.8	0.7	7540	chr2L	20303161	intergenic	not near genes	chr2L	20306931	intergenic	not near genes	chr2L	20310701	intergenic	not near genes	chr2L_8_20305001	chr2L_20305001	RAL-382
767	chr2L	20372190	20372245	chr2L	20372481	20372536	pogo	28	290	6.0	13.5	9.8	2.6	346	chr2L	20372190	intergenic	Ugt37a1 -	chr2L	20372363	intergenic	Ugt37a1 -	chr2L	20372536	exon	Ugt37a1 -	chr2L_28_20370001	chr2L_20370001	RAL-382
769	chr2L	20407744	20407794	chr2L	20412926	20412969	flea	8	5172	15.5	4.5	10.0	0.7	5225	chr2L	20407744	intron	CG10947 -	chr2L	20410356	intron	CG10947 -	chr2L	20412969	intron	CG10947 -	chr2L_8_20410001	chr2L_20410001	RAL-382
772	chr2L	20568611	20568679	chr2L	20569051	20569108	X-element	33	437	16.0	6.0	11.0	2.8	497	chr2L	20568611	intron	CR45347 +	chr2L	20568860	intron	CR45347 +	chr2L	20569108	intron	CR45347 +	chr2L_33_20565001	chr2L_20565001	RAL-382
773	chr2L	20576173	20576243	chr2L	20583691	20583736	blood	19	7515	9.5	7.5	8.5	2.0	7563	chr2L	20576173	intergenic	CR45347 +	chr2L	20579954	intergenic	not near genes	chr2L	20583736	3` UTR	CR44909 -	chr2L_19_20575001	chr2L_20575001	RAL-382
777	chr2L	20637019	20637022	chr2L	23016848	23016851	NOF	4	2379829	0.0	27.0	13.5	0.3	2379832	chr2L	20637019	intergenic	not near genes	chr2L	21826935	intergenic	not near genes	chr2L	23016851	intron	Cht3 -	chr2L_4_21825001	chr2L_21825001	RAL-382
787	chr2L	20891485	20891542	chr2L	20896636	20896693	jockey	21	5149	3.5	8.5	6.0	3.0	5208	chr2L	20891485	intron,intron	CG43739 -,sky -	chr2L	20894089	intron,intron	CG43739 -,sky -	chr2L	20896693	intron,intron	CG43739 -,sky -	chr2L_21_20890001	chr2L_20890001	RAL-382
788	chr2L	20901423	20901486	chr2L	20902619	20902700	1360	6	1207	5.5	6.0	5.8	0.9	1277	chr2L	20901423	intron,intron	CG43739 -,sky -	chr2L	20902062	intron,intron	CG43739 -,sky -	chr2L	20902700	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	RAL-382
792	chr2L	20976604	20976662	chr2L	20981469	20981526	X-element	29	4864	9.0	8.0	8.5	3.1	4922	chr2L	20976604	intron	CG42238 -	chr2L	20979065	intron	CG42238 -	chr2L	20981526	intron	CG42238 -	chr2L_29_20975001	chr2L_20975001	RAL-382
796	chr2L	21020236	21020293	chr2L	21023963	21024020	NOF	19	3722	10.0	10.0	10.0	1.7	3784	chr2L	21020236	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21024020	intron	CG42238 -	chr2L_19_21020001	chr2L_21020001	RAL-382
797	chr2L	21041095	21041166	chr2L	21049406	21049467	Tirant	23	8307	5.0	10.5	7.8	2.6	8372	chr2L	21041095	intron	CG42238 -	chr2L	21045281	intron	CG42238 -	chr2L	21049467	intron	CG42238 -	chr2L_23_21045001	chr2L_21045001	RAL-382
802	chr2L	21347508	21347540	chr2L	21355030	21355061	blood	11	7520	25.0	8.0	16.5	0.6	7553	chr2L	21347508	intron	Tsp39D +	chr2L	21351284	intron	Tsp39D +	chr2L	21355061	intron	Tsp39D +	chr2L_11_21350001	chr2L_21350001	RAL-382
803	chr2L	21347543	21347570	chr2L	21355026	21355091	blood	19	7518	16.0	8.0	12.0	1.5	7548	chr2L	21347543	intron	Tsp39D +	chr2L	21351317	intron	Tsp39D +	chr2L	21355091	intron	Tsp39D +	chr2L_19_21350001	chr2L_21350001	RAL-382
804	chr2L	21596989	21597059	chr2L	21604783	21604793	roo	12	7785	7.0	14.0	10.5	1.0	7804	chr2L	21596989	intergenic	not near genes	chr2L	21600891	intergenic	not near genes	chr2L	21604793	intergenic	not near genes	chr2L_12_21600001	chr2L_21600001	RAL-382
805	chr2L	21691785	21691801	chr2L	21698305	21698321	Burdock	9	6520	23.0	0.0	11.5	0.7	6536	chr2L	21691785	intron	CG31619 +	chr2L	21695053	intron	CG31619 +	chr2L	21698321	intron	CG31619 +	chr2L_9_21695001	chr2L_21695001	RAL-382
806	chr2L	21691802	21691824	chr2L	21698302	21698329	Burdock	7	6513	16.5	0.0	8.2	0.8	6527	chr2L	21691802	intron	CG31619 +	chr2L	21695066	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_7_21695001	chr2L_21695001	RAL-382
814	chr2L	21981643	21981715	chr2L	21990858	21990896	roo	28	9210	8.5	10.0	9.2	2.7	9253	chr2L	21981643	exon	CG2528 -	chr2L	21986270	intron	CG2528 -	chr2L	21990896	exon	CG2528 -	chr2L_28_21985001	chr2L_21985001	RAL-382
817	chr2L	22082201	22082213	chr2L	22082342	22082354	INE-1	9	141	9.0	16.5	12.8	0.7	153	chr2L	22082201	intergenic	not near genes	chr2L	22082278	intergenic	not near genes	chr2L	22082354	intergenic	not near genes	chr2L_9_22080001	chr2L_22080001	RAL-382
824	chr2L	22515102	22515123	chr2L	22522602	22522623	HMS-Beagle2	6	7499	15.5	0.0	7.8	0.7	7521	chr2L	22515102	intergenic	not near genes	chr2L	22518862	intergenic	not near genes	chr2L	22522623	intergenic	not near genes	chr2L_6_22515001	chr2L_22515001	RAL-382
825	chr2L	22548892	22548929	chr2L	22550140	22550204	1360	10	1262	0.0	11.0	5.5	1.5	1312	chr2L	22548892	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550204	intergenic	CG17493 +	chr2L_10_22545001	chr2L_22545001	RAL-382
828	chr2L	22581944	22582002	chr2L	22583778	22583842	S-element	14	1839	10.5	11.0	10.8	1.2	1898	chr2L	22581944	intron	CG17494 +	chr2L	22582893	intron	CG17494 +	chr2L	22583842	intron	CG17494 +	chr2L_14_22580001	chr2L_22580001	RAL-382
830	chr2L	22679808	22679815	chr2L	22684630	22684637	F-element	4	4822	12.5	19.5	16.0	0.2	4829	chr2L	22679808	intron	CG40006 -	chr2L	22682222	intron	CG40006 -	chr2L	22684637	intron	CG40006 -	chr2L_4_22680001	chr2L_22680001	RAL-382
831	chr2L	22776373	22776447	chr2L	22778212	22778286	S-element	41	1839	11.0	8.0	9.5	3.9	1913	chr2L	22776373	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778286	intergenic	not near genes	chr2L_41_22775001	chr2L_22775001	RAL-382
832	chr2R	469923	469959	chr2R	473214	473217	F-element	12	3288	6.0	14.0	10.0	1.1	3294	chr2R	469923	intergenic	not near genes	chr2R	471570	intergenic	not near genes	chr2R	473217	intergenic	not near genes	chr2R_12_470001	chr2R_470001	RAL-382
833	chr2R	529319	529339	chr2R	537994	538014	Max-element	7	8675	7.0	14.5	10.8	0.6	8695	chr2R	529319	intron	CG40378 +	chr2R	533666	intron	CG40378 +	chr2R	538014	intron	CG40378 +	chr2R_7_530001	chr2R_530001	RAL-382
834	chr2R	529342	529347	chr2R	537975	538022	Max-element	6	8663	5.5	11.0	8.2	0.7	8680	chr2R	529342	intron	CG40378 +	chr2R	533682	intron	CG40378 +	chr2R	538022	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-382
835	chr2R	1082367	1082371	chr2R	1087193	1087197	Doc	5	4826	8.5	20.5	14.5	0.3	4830	chr2R	1082367	intron	rl +	chr2R	1084782	intron	rl +	chr2R	1087197	intron	rl +	chr2R_5_1080001	chr2R_1080001	RAL-382
836	chr2R	1516564	1516603	chr2R	1521342	1521381	1731	44	4776	67.0	52.5	59.8	0.7	4817	chr2R	1516564	exon	Maf1 -	chr2R	1518972	intron	Maf1 -	chr2R	1521381	5` UTR	Maf1 -	chr2R_44_1515001	chr2R_1515001	RAL-382
838	chr2R	2498944	2499008	chr2R	2508141	2508158	roo	21	9194	13.0	6.5	9.8	1.9	9214	chr2R	2498944	intron	MFS17 -	chr2R	2503551	intron	MFS17 -	chr2R	2508158	intron	MFS17 -	chr2R_21_2500001	chr2R_2500001	RAL-382
839	chr2R	2591487	2591509	chr2R	2594213	2594234	roo	5	2726	49.0	32.0	40.5	0.1	2747	chr2R	2591487	intergenic	not near genes	chr2R	2592860	intergenic	not near genes	chr2R	2594234	intergenic	not near genes	chr2R_5_2590001	chr2R_2590001	RAL-382
841	chr2R	3144039	3144110	chr2R	3393367	3393438	Doc	20	249328	39.5	41.0	40.2	0.5	249399	chr2R	3144039	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393438	intergenic	not near genes	chr2R_20_3265001	chr2R_3265001	RAL-382
843	chr2R	3532578	3532629	chr2R	3536071	3536122	Doc	18	3493	7.5	8.0	7.8	2.0	3544	chr2R	3532578	intergenic	not near genes	chr2R	3534350	intergenic	not near genes	chr2R	3536122	intergenic	not near genes	chr2R_18_3530001	chr2R_3530001	RAL-382
846	chr2R	4622911	4622978	chr2R	4624120	4624187	1360	21	1206	5.5	13.0	9.2	2.1	1276	chr2R	4622911	intergenic	CR44101 -	chr2R	4623549	intergenic	not near genes	chr2R	4624187	intergenic	not near genes	chr2R_21_4620001	chr2R_4620001	RAL-382
851	chr2R	4838834	4838895	chr2R	4840407	4840468	transib2	19	1570	8.5	8.0	8.2	2.1	1634	chr2R	4838834	intergenic	not near genes	chr2R	4839651	intergenic	not near genes	chr2R	4840468	intergenic	not near genes	chr2R_19_4835001	chr2R_4835001	RAL-382
852	chr2R	4870695	4870741	chr2R	4871256	4871302	R1A1-element	11	560	6.0	6.5	6.2	1.5	607	chr2R	4870695	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871302	intergenic	not near genes	chr2R_11_4870001	chr2R_4870001	RAL-382
862	chr2R	5322586	5322596	chr2R	5323048	5323058	INE-1	6	462	16.5	8.5	12.5	0.4	472	chr2R	5322586	intron	sxc +	chr2R	5322822	intron	sxc +	chr2R	5323058	intron	sxc +	chr2R_6_5320001	chr2R_5320001	RAL-382
864	chr2R	5417949	5418018	chr2R	5420631	5420700	Burdock	32	2681	9.5	7.0	8.2	3.5	2751	chr2R	5417949	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420700	intron	laccase2 +	chr2R_32_5415001	chr2R_5415001	RAL-382
869	chr2R	5504470	5504476	chr2R	5504601	5504607	INE-1	5	131	11.5	7.0	9.2	0.5	137	chr2R	5504470	intron,intron	CG30438 +,TpnC4 -	chr2R	5504538	intron,intron	CG30438 +,TpnC4 -	chr2R	5504607	intron,intron	CG30438 +,TpnC4 -	chr2R_5_5500001	chr2R_5500001	RAL-382
873	chr2R	5678718	5678732	chr2R	5679095	5679109	INE-1	11	377	7.5	10.5	9.0	1.1	391	chr2R	5678718	intron	scaf -	chr2R	5678914	intron	scaf -	chr2R	5679109	intron	scaf -	chr2R_11_5675001	chr2R_5675001	RAL-382
880	chr2R	5869230	5869309	chr2R	5874356	5874429	flea	26	5125	6.5	10.5	8.5	2.7	5199	chr2R	5869230	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874429	intergenic	not near genes	chr2R_26_5870001	chr2R_5870001	RAL-382
885	chr2R	5902114	5902184	chr2R	5909723	5909793	17.6	22	7607	11.0	9.5	10.2	2.0	7679	chr2R	5902114	5` UTR	CG43366 +	chr2R	5905954	intron	CG43366 +	chr2R	5909793	intron	CG43366 +	chr2R_22_5905001	chr2R_5905001	RAL-382
890	chr2R	6096690	6096714	chr2R	6101938	6101944	BS	5	5244	14.5	11.5	13.0	0.4	5254	chr2R	6096690	intron	EcR -	chr2R	6099317	intron	EcR -	chr2R	6101944	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-382
891	chr2R	6096717	6096744	chr2R	6101937	6101959	BS	10	5230	9.5	11.5	10.5	0.9	5242	chr2R	6096717	intron	EcR -	chr2R	6099338	intron	EcR -	chr2R	6101959	intron	EcR -	chr2R_10_6095001	chr2R_6095001	RAL-382
898	chr2R	6494488	6494548	chr2R	6499300	6499360	F-element	23	4809	7.0	10.5	8.8	2.3	4872	chr2R	6494488	intergenic	not near genes	chr2R	6496924	intergenic	not near genes	chr2R	6499360	intergenic	not near genes	chr2R_23_6495001	chr2R_6495001	RAL-382
900	chr2R	6579761	6579803	chr2R	6584898	6584940	flea	21	5137	7.0	8.5	7.8	2.4	5179	chr2R	6579761	intron	jing +	chr2R	6582350	intron	jing +	chr2R	6584940	intron	jing +	chr2R_21_6580001	chr2R_6580001	RAL-382
915	chr2R	6952118	6952185	chr2R	6959750	6959815	opus	28	7629	9.5	12.0	10.8	2.4	7697	chr2R	6952118	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955966	intron,intron	mim -,CheB42c -	chr2R	6959815	intron,intron	mim -,CheB42c -	chr2R_28_6955001	chr2R_6955001	RAL-382
922	chr2R	7196529	7196588	chr2R	7201354	7201412	F-element	27	4825	12.0	11.0	11.5	2.2	4883	chr2R	7196529	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201412	intron	pk +	chr2R_27_7195001	chr2R_7195001	RAL-382
923	chr2R	7209844	7209869	chr2R	7217638	7217680	roo	7	7804	3.5	0.5	2.0	2.3	7836	chr2R	7209844	intron	pk +	chr2R	7213762	intron	pk +	chr2R	7217680	intron	pk +	chr2R_7_7210001	chr2R_7210001	RAL-382
925	chr2R	7235785	7235835	chr2R	7240918	7240976	jockey	15	5139	12.0	5.5	8.8	1.5	5191	chr2R	7235785	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240976	intergenic	not near genes	chr2R_15_7235001	chr2R_7235001	RAL-382
926	chr2R	7262148	7262206	chr2R	7269259	7269317	297	19	7107	11.0	12.5	11.8	1.5	7169	chr2R	7262148	intergenic	not near genes	chr2R	7265732	intergenic	not near genes	chr2R	7269317	intergenic	not near genes	chr2R_19_7265001	chr2R_7265001	RAL-382
929	chr2R	7434856	7434898	chr2R	7439206	7439249	Juan	19	4351	11.0	11.5	11.2	1.6	4393	chr2R	7434856	3` UTR	so +	chr2R	7437052	intergenic	not near genes	chr2R	7439249	intergenic	not near genes	chr2R_19_7435001	chr2R_7435001	RAL-382
931	chr2R	7608364	7608434	chr2R	7613614	7613657	I-element	27	5250	8.0	6.0	7.0	3.4	5293	chr2R	7608364	intron	CG1358 -	chr2R	7611010	intron	CG1358 -	chr2R	7613657	intron	CG1358 -	chr2R_27_7610001	chr2R_7610001	RAL-382
933	chr2R	7815629	7815692	chr2R	7822148	7822211	Burdock	41	6518	11.5	9.0	10.2	3.7	6582	chr2R	7815629	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822211	3` UTR	cathD -	chr2R_41_7815001	chr2R_7815001	RAL-382
934	chr2R	7862231	7862249	chr2R	7867368	7867371	flea	10	5135	17.5	17.0	17.2	0.5	5140	chr2R	7862231	intron	Dgk -	chr2R	7864801	intron	Dgk -	chr2R	7867371	intron	Dgk -	chr2R_10_7860001	chr2R_7860001	RAL-382
935	chr2R	7869150	7869211	chr2R	7873986	7874045	Doc	16	4831	7.5	9.0	8.2	1.7	4895	chr2R	7869150	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7874045	intron	Dgk -	chr2R_16_7870001	chr2R_7870001	RAL-382
951	chr2R	8330822	8330888	chr2R	8331358	8331424	roo	26	536	8.5	9.0	8.8	2.7	602	chr2R	8330822	intron	pdm3 +	chr2R	8331123	intron	pdm3 +	chr2R	8331424	intron	pdm3 +	chr2R_26_8330001	chr2R_8330001	RAL-382
953	chr2R	8398164	8398240	chr2R	8402995	8403071	Doc	25	4828	6.0	7.5	6.8	3.2	4907	chr2R	8398164	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403071	intron	CG2121 -	chr2R_25_8400001	chr2R_8400001	RAL-382
956	chr2R	8490569	8490574	chr2R	8492338	8492349	Rt1c	6	1772	13.5	21.5	17.5	0.3	1780	chr2R	8490569	intron	mtt -	chr2R	8491459	intron	mtt -	chr2R	8492349	intron	mtt -	chr2R_6_8490001	chr2R_8490001	RAL-382
967	chr2R	8722720	8722795	chr2R	8723010	8723049	pogo	29	286	7.5	4.0	5.8	4.3	329	chr2R	8722720	intron	CG14767 -	chr2R	8722884	intron	CG14767 -	chr2R	8723049	intron	CG14767 -	chr2R_29_8720001	chr2R_8720001	RAL-382
969	chr2R	8777875	8777944	chr2R	8784129	8784198	diver	22	6252	5.5	10.0	7.8	2.5	6323	chr2R	8777875	intergenic	not near genes	chr2R	8781036	intergenic	not near genes	chr2R	8784198	intergenic	not near genes	chr2R_22_8780001	chr2R_8780001	RAL-382
978	chr2R	9151264	9151324	chr2R	9157776	9157844	Burdock	27	6519	9.0	11.5	10.2	2.4	6580	chr2R	9151264	exon	CG30345 +	chr2R	9154554	intergenic	not near genes	chr2R	9157844	intergenic	CG8008 -	chr2R_27_9150001	chr2R_9150001	RAL-382
979	chr2R	9212663	9212724	chr2R	9213183	9213203	roo	14	520	7.0	5.0	6.0	2.0	540	chr2R	9212663	intergenic	CR45309 +	chr2R	9212933	intergenic	CR45309 +	chr2R	9213203	5` UTR	CR45309 +	chr2R_14_9210001	chr2R_9210001	RAL-382
988	chr2R	9445488	9445529	chr2R	9445620	9445661	INE-1	8	125	0.0	17.5	8.8	0.8	173	chr2R	9445488	3` UTR	CR45321 -	chr2R	9445574	3` UTR	CR45321 -	chr2R	9445661	3` UTR	CR45321 -	chr2R_8_9445001	chr2R_9445001	RAL-382
991	chr2R	9480035	9480075	chr2R	9490616	9490656	roo	19	10580	19.0	1.0	10.0	1.7	10621	chr2R	9480035	intergenic	not near genes	chr2R	9485346	intergenic	not near genes	chr2R	9490656	intergenic	not near genes	chr2R_19_9485001	chr2R_9485001	RAL-382
1004	chr2R	9726575	9726635	chr2R	9734176	9734236	17.6	26	7601	7.5	12.5	10.0	2.4	7661	chr2R	9726575	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734236	intron	sqa -	chr2R_26_9730001	chr2R_9730001	RAL-382
1011	chr2R	9870997	9871068	chr2R	9871533	9871604	roo	27	529	12.0	8.0	10.0	2.5	607	chr2R	9870997	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871604	intron,5` UTR	cbx -,CG18446 +	chr2R_27_9870001	chr2R_9870001	RAL-382
1014	chr2R	9945395	9945463	chr2R	9945641	9945664	BS	26	242	7.5	6.0	6.8	3.3	269	chr2R	9945395	intron	Mef2 -	chr2R	9945530	intron	Mef2 -	chr2R	9945664	intron	Mef2 -	chr2R_26_9945001	chr2R_9945001	RAL-382
1019	chr2R	10005804	10005878	chr2R	10007018	10007066	1360	24	1208	10.0	6.5	8.2	2.6	1262	chr2R	10005804	intron	Pka-R2 -	chr2R	10006435	intron	Pka-R2 -	chr2R	10007066	intron	Pka-R2 -	chr2R_24_10005001	chr2R_10005001	RAL-382
1026	chr2R	10176837	10176900	chr2R	10186057	10186120	roo	34	9220	8.0	15.5	11.8	2.7	9283	chr2R	10176837	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186120	intron	KCNQ -	chr2R_34_10180001	chr2R_10180001	RAL-382
1049	chr2R	10622302	10622331	chr2R	10637117	10637146	mdg1	15	14815	19.0	10.0	14.5	1.0	14844	chr2R	10622302	intron	CG11883 +	chr2R	10629724	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_15_10625001	chr2R_10625001	RAL-382
1059	chr2R	10948016	10948047	chr2R	10955617	10955648	17.6	11	7599	2.5	17.0	9.8	1.0	7632	chr2R	10948016	intergenic	not near genes	chr2R	10951832	intergenic	not near genes	chr2R	10955648	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	RAL-382
1061	chr2R	10979617	10979677	chr2R	10980135	10980195	297	17	515	6.5	7.5	7.0	2.1	578	chr2R	10979617	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980195	intergenic	not near genes	chr2R_17_10975001	chr2R_10975001	RAL-382
1062	chr2R	11009775	11009794	chr2R	11018998	11019015	roo	15	9224	19.5	9.5	14.5	1.0	9240	chr2R	11009775	intron	luna -	chr2R	11014395	intron	luna -	chr2R	11019015	intron	luna -	chr2R_15_11010001	chr2R_11010001	RAL-382
1063	chr2R	11009796	11009843	chr2R	11018996	11019057	roo	15	9217	8.5	9.0	8.8	1.5	9261	chr2R	11009796	intron	luna -	chr2R	11014426	intron	luna -	chr2R	11019057	intron	luna -	chr2R_15_11010001	chr2R_11010001	RAL-382
1064	chr2R	11019835	11019901	chr2R	11024951	11024997	jockey	18	5113	4.5	4.5	4.5	3.3	5162	chr2R	11019835	intron	luna -	chr2R	11022416	intron	luna -	chr2R	11024997	intron	luna -	chr2R_18_11020001	chr2R_11020001	RAL-382
1073	chr2R	11207786	11207831	chr2R	11208029	11208074	BS	21	241	12.0	14.5	13.2	1.5	288	chr2R	11207786	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208074	intron	shn +	chr2R_21_11205001	chr2R_11205001	RAL-382
1075	chr2R	11297589	11297636	chr2R	11301963	11302010	flea	23	4373	3.5	4.0	3.8	4.8	4421	chr2R	11297589	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11302010	5` UTR	CG7741 +	chr2R_23_11295001	chr2R_11295001	RAL-382
1079	chr2R	11415480	11415539	chr2R	11418678	11418738	opus	22	3198	12.5	9.0	10.8	1.9	3258	chr2R	11415480	intron	Drip -	chr2R	11417109	intron	Drip -	chr2R	11418738	intron	Drip -	chr2R_22_11415001	chr2R_11415001	RAL-382
1080	chr2R	11472604	11472680	chr2R	11473851	11473892	pogo	33	1243	5.5	10.5	8.0	3.7	1288	chr2R	11472604	intergenic	not near genes	chr2R	11473248	intergenic	not near genes	chr2R	11473892	intergenic	not near genes	chr2R_33_11470001	chr2R_11470001	RAL-382
1110	chr2R	12481146	12481167	chr2R	12482963	12482966	roo	7	1830	5.0	11.0	8.0	0.8	1820	chr2R	12481146	exon	Dh44-R2 +	chr2R	12482056	intron	Dh44-R2 +	chr2R	12482966	intron	Dh44-R2 +	chr2R_7_12480001	chr2R_12480001	RAL-382
1111	chr2R	12501692	12501719	chr2R	12503857	12503892	Rt1c	5	2183	5.0	5.5	5.2	0.8	2200	chr2R	12501692	intron	fdl -	chr2R	12502792	intron	fdl -	chr2R	12503892	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-382
1120	chr2R	12707467	12707546	chr2R	12715883	12715962	roo	34	8416	4.5	4.5	4.5	6.2	8495	chr2R	12707467	intron	CG42663 +	chr2R	12711714	intron	CG42663 +	chr2R	12715962	intron	CG42663 +	chr2R_34_12710001	chr2R_12710001	RAL-382
1123	chr2R	12789254	12789265	chr2R	12797667	12797673	roo	7	8412	20.5	4.5	12.5	0.5	8419	chr2R	12789254	intron,3` UTR	sca +,CR45137 -	chr2R	12793464	intron,intron	sca +,CR45137 -	chr2R	12797673	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	RAL-382
1124	chr2R	12789266	12789327	chr2R	12797659	12797692	roo	19	8398	9.0	4.5	6.8	2.4	8426	chr2R	12789266	intron,3` UTR	sca +,CR45137 -	chr2R	12793479	intron,intron	sca +,CR45137 -	chr2R	12797692	intron,3` UTR	sca +,CR45137 -	chr2R_19_12790001	chr2R_12790001	RAL-382
1127	chr2R	12819404	12819413	chr2R	12824523	12824532	jockey	5	5118	18.0	3.5	10.8	0.4	5128	chr2R	12819404	intergenic	not near genes	chr2R	12821968	intergenic	not near genes	chr2R	12824532	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-382
1128	chr2R	12819415	12819474	chr2R	12824522	12824592	jockey	29	5116	7.5	3.5	5.5	4.5	5177	chr2R	12819415	intergenic	not near genes	chr2R	12822004	intergenic	not near genes	chr2R	12824592	intergenic	not near genes	chr2R_29_12820001	chr2R_12820001	RAL-382
1137	chr2R	13136799	13136859	chr2R	13141647	13141707	Doc	24	4846	12.5	6.0	9.2	2.4	4908	chr2R	13136799	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141707	intron	Cap-G +	chr2R_24_13135001	chr2R_13135001	RAL-382
1154	chr2R	13580491	13580497	chr2R	13580891	13580897	jockey	5	400	0.5	7.5	4.0	1.0	406	chr2R	13580491	3` UTR	CG6191 -	chr2R	13580694	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580897	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-382
1155	chr2R	13580499	13580508	chr2R	13580873	13580907	jockey	5	389	0.5	6.0	3.2	1.2	408	chr2R	13580499	3` UTR	CG6191 -	chr2R	13580703	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580907	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-382
1163	chr2R	13728093	13728123	chr2R	13735800	13735830	opus	21	7707	25.0	8.5	16.8	1.2	7737	chr2R	13728093	intron	fas +	chr2R	13731962	intron	fas +	chr2R	13735830	intron	fas +	chr2R_21_13730001	chr2R_13730001	RAL-382
1164	chr2R	13728124	13728156	chr2R	13735791	13735863	opus	20	7704	15.0	6.0	10.5	1.7	7739	chr2R	13728124	intron	fas +	chr2R	13731994	intron	fas +	chr2R	13735863	intron	fas +	chr2R_20_13730001	chr2R_13730001	RAL-382
1172	chr2R	13905591	13905629	chr2R	13907583	13907661	Rt1a	8	2016	0.0	4.0	2.0	2.7	2070	chr2R	13905591	intron	shot -	chr2R	13906626	intron	shot -	chr2R	13907661	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-382
1181	chr2R	14467268	14467321	chr2R	14476465	14476529	roo	26	9206	8.0	4.5	6.2	3.6	9261	chr2R	14467268	intergenic	not near genes	chr2R	14471898	intergenic	not near genes	chr2R	14476529	5` UTR	CR44462 +	chr2R_26_14470001	chr2R_14470001	RAL-382
1183	chr2R	14497337	14497385	chr2R	14498550	14498598	1360	13	1213	5.0	7.0	6.0	1.9	1261	chr2R	14497337	intergenic	Cpsf160 -,L +	chr2R	14497968	intron	Cpsf160 -	chr2R	14498598	3` UTR	Cpsf160 -	chr2R_13_14495001	chr2R_14495001	RAL-382
1207	chr2R	14889187	14889238	chr2R	14897842	14897885	Max-element	9	8649	10.5	0.5	5.5	1.4	8698	chr2R	14889187	intergenic	Cyp6a8 -	chr2R	14893536	intergenic	not near genes	chr2R	14897885	intergenic	not near genes	chr2R_9_14890001	chr2R_14890001	RAL-382
1214	chr2R	15004681	15004758	chr2R	15005060	15005071	jockey	30	377	9.5	9.5	9.5	2.9	390	chr2R	15004681	intergenic	not near genes	chr2R	15004876	intergenic	not near genes	chr2R	15005071	intergenic	not near genes	chr2R_30_15000001	chr2R_15000001	RAL-382
1215	chr2R	15015416	15015435	chr2R	15022890	15022894	mdg1	6	7471	20.0	7.0	13.5	0.4	7478	chr2R	15015416	intron	hbs +	chr2R	15019155	intron	hbs +	chr2R	15022894	intron	hbs +	chr2R_6_15015001	chr2R_15015001	RAL-382
1216	chr2R	15015437	15015478	chr2R	15022881	15022952	mdg1	25	7469	9.5	5.5	7.5	2.9	7515	chr2R	15015437	intron	hbs +	chr2R	15019194	intron	hbs +	chr2R	15022952	intron	hbs +	chr2R_25_15015001	chr2R_15015001	RAL-382
1217	chr2R	15084936	15085002	chr2R	15092035	15092100	297	21	7096	4.5	9.0	6.8	2.7	7164	chr2R	15084936	intergenic	not near genes	chr2R	15088518	intergenic	not near genes	chr2R	15092100	5` UTR	CR44457 +	chr2R_21_15085001	chr2R_15085001	RAL-382
1220	chr2R	15119274	15119350	chr2R	15127805	15127838	Tirant	25	8525	3.5	6.0	4.8	4.3	8564	chr2R	15119274	intron	chn +	chr2R	15123556	intron	chn +	chr2R	15127838	intron	chn +	chr2R_25_15120001	chr2R_15120001	RAL-382
1236	chr2R	16061675	16061717	chr2R	16064361	16064381	Burdock	10	2683	10.0	7.5	8.8	1.0	2706	chr2R	16061675	intergenic	not near genes	chr2R	16063028	intergenic	not near genes	chr2R	16064381	intergenic	not near genes	chr2R_10_16060001	chr2R_16060001	RAL-382
1246	chr2R	16539589	16539607	chr2R	16544845	16544863	copia	12	5255	11.5	0.0	5.8	1.8	5274	chr2R	16539589	intergenic	not near genes	chr2R	16542226	intergenic	not near genes	chr2R	16544863	intergenic	not near genes	chr2R_12_16540001	chr2R_16540001	RAL-382
1268	chr2R	17147200	17147262	chr2R	17152281	17152342	jockey	26	5079	12.0	12.5	12.2	2.0	5142	chr2R	17147200	intergenic	not near genes	chr2R	17149771	intergenic	not near genes	chr2R	17152342	intergenic	not near genes	chr2R_26_17145001	chr2R_17145001	RAL-382
1269	chr2R	17176355	17176379	chr2R	17182589	17182619	diver	17	6239	0.0	14.0	7.0	2.1	6264	chr2R	17176355	intergenic	not near genes	chr2R	17179487	intergenic	not near genes	chr2R	17182619	intergenic	not near genes	chr2R_17_17175001	chr2R_17175001	RAL-382
1273	chr2R	17236468	17236524	chr2R	17241722	17241778	copia	21	5253	11.0	10.5	10.8	1.8	5310	chr2R	17236468	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241778	intron	mbl +	chr2R_21_17235001	chr2R_17235001	RAL-382
1279	chr2R	17485875	17485934	chr2R	17490687	17490746	F-element	27	4812	10.0	8.0	9.0	2.7	4871	chr2R	17485875	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488310	intron	NT5E-2 +	chr2R	17490746	intron	NT5E-2 +	chr2R_27_17485001	chr2R_17485001	RAL-382
1287	chr2R	17782318	17782391	chr2R	17783571	17783614	pogo	38	1252	9.0	7.5	8.2	4.1	1296	chr2R	17782318	intergenic	CG33981 -,fab1 -	chr2R	17782966	intergenic	not near genes	chr2R	17783614	intergenic	mir-31a -	chr2R_38_17780001	chr2R_17780001	RAL-382
1288	chr2R	17783989	17784045	chr2R	17784280	17784336	pogo	25	287	10.0	5.5	7.8	2.8	347	chr2R	17783989	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784336	intergenic	mir-31a -	chr2R_25_17780001	chr2R_17780001	RAL-382
1301	chr2R	18045628	18045678	chr2R	18046030	18046074	jockey	27	402	16.5	12.0	14.2	1.8	446	chr2R	18045628	intergenic	not near genes	chr2R	18045851	intergenic	not near genes	chr2R	18046074	intergenic	CG5767 -	chr2R_27_18045001	chr2R_18045001	RAL-382
1302	chr2R	18045679	18045691	chr2R	18046020	18046093	jockey	5	390	14.0	10.0	12.0	0.4	414	chr2R	18045679	intergenic	not near genes	chr2R	18045886	intergenic	CG5767 -	chr2R	18046093	intergenic	CG5767 -	chr2R_5_18045001	chr2R_18045001	RAL-382
1307	chr2R	18111639	18111708	chr2R	18115557	18115627	F-element	25	3918	6.5	11.0	8.8	2.6	3988	chr2R	18111639	intergenic	not near genes	chr2R	18113633	intergenic	not near genes	chr2R	18115627	intergenic	not near genes	chr2R_25_18110001	chr2R_18110001	RAL-382
1318	chr2R	18358353	18358420	chr2R	18372606	18372610	roo	10	14253	6.5	0.0	3.2	2.4	14257	chr2R	18358353	intergenic	not near genes	chr2R	18365482	intergenic	not near genes	chr2R	18372610	intergenic	not near genes	chr2R_10_18365001	chr2R_18365001	RAL-382
1328	chr2R	18487792	18487827	chr2R	18495293	18495328	blood	10	7500	7.5	9.0	8.2	1.1	7536	chr2R	18487792	intron	CG30116 -	chr2R	18491560	intron	CG30116 -	chr2R	18495328	intron	CG30116 -	chr2R_10_18490001	chr2R_18490001	RAL-382
1331	chr2R	18575752	18575830	chr2R	18581990	18582042	3S18	27	6230	3.5	5.0	4.2	5.2	6290	chr2R	18575752	intron	GEFmeso -	chr2R	18578897	intron	GEFmeso -	chr2R	18582042	intron	GEFmeso -	chr2R_27_18575001	chr2R_18575001	RAL-382
1332	chr2R	18590825	18590835	chr2R	18600027	18600037	roo	4	9202	11.5	7.0	9.2	0.4	9212	chr2R	18590825	intron	GEFmeso -	chr2R	18595431	intron	GEFmeso -	chr2R	18600037	intron	GEFmeso -	chr2R_4_18595001	chr2R_18595001	RAL-382
1333	chr2R	18590836	18590899	chr2R	18600022	18600073	roo	20	9194	5.5	6.5	6.0	2.9	9237	chr2R	18590836	intron	GEFmeso -	chr2R	18595454	intron	GEFmeso -	chr2R	18600073	intron	GEFmeso -	chr2R_20_18595001	chr2R_18595001	RAL-382
1360	chr2R	19715816	19715843	chr2R	19723335	19723362	blood	7	7519	18.0	10.0	14.0	0.5	7546	chr2R	19715816	intergenic	not near genes	chr2R	19719589	intergenic	not near genes	chr2R	19723362	intergenic	not near genes	chr2R_7_19715001	chr2R_19715001	RAL-382
1361	chr2R	19715845	19715857	chr2R	19723332	19723364	blood	5	7510	15.5	10.0	12.8	0.4	7519	chr2R	19715845	intergenic	not near genes	chr2R	19719604	intergenic	not near genes	chr2R	19723364	intergenic	not near genes	chr2R_5_19715001	chr2R_19715001	RAL-382
1363	chr2R	19776568	19776625	chr2R	19779932	19779946	jockey	21	3368	8.5	14.5	11.5	1.7	3378	chr2R	19776568	intergenic	not near genes	chr2R	19778257	intergenic	not near genes	chr2R	19779946	intergenic	not near genes	chr2R_21_19775001	chr2R_19775001	RAL-382
1365	chr2R	19914845	19914856	chr2R	19922308	19922319	mdg1	5	7463	1.0	8.5	4.8	0.9	7474	chr2R	19914845	intergenic	not near genes	chr2R	19918582	intergenic	not near genes	chr2R	19922319	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-382
1366	chr2R	19957384	19957454	chr2R	19962636	19962686	copia	23	5245	10.5	9.0	9.8	2.1	5302	chr2R	19957384	intergenic	CG44623 +	chr2R	19960035	intergenic	not near genes	chr2R	19962686	intergenic	not near genes	chr2R_23_19960001	chr2R_19960001	RAL-382
1367	chr2R	20069205	20069248	chr2R	20071885	20071928	opus	15	2680	14.5	10.5	12.5	1.1	2723	chr2R	20069205	intergenic	not near genes	chr2R	20070566	intergenic	not near genes	chr2R	20071928	intergenic	not near genes	chr2R_15_20070001	chr2R_20070001	RAL-382
1368	chr2R	20069249	20069270	chr2R	20071882	20071950	opus	4	2668	9.0	9.0	9.0	0.4	2701	chr2R	20069249	intergenic	not near genes	chr2R	20070600	intergenic	not near genes	chr2R	20071950	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	RAL-382
1369	chr2R	20087978	20088027	chr2R	20088136	20088185	1360	12	158	4.0	8.5	6.2	1.7	207	chr2R	20087978	intergenic	not near genes	chr2R	20088082	intergenic	not near genes	chr2R	20088185	intergenic	not near genes	chr2R_12_20085001	chr2R_20085001	RAL-382
1374	chr2R	20368469	20368490	chr2R	20377682	20377703	roo	7	9213	18.5	11.0	14.8	0.4	9234	chr2R	20368469	intergenic	not near genes	chr2R	20373086	intergenic	not near genes	chr2R	20377703	intergenic	not near genes	chr2R_7_20370001	chr2R_20370001	RAL-382
1395	chr2R	20739417	20739435	chr2R	20744229	20744253	F-element	6	4816	13.0	8.0	10.5	0.5	4836	chr2R	20739417	intron	dpr +	chr2R	20741835	intron	dpr +	chr2R	20744253	intron	dpr +	chr2R_6_20740001	chr2R_20740001	RAL-382
1396	chr2R	20739436	20739464	chr2R	20744224	20744268	F-element	9	4809	9.5	7.0	8.2	1.0	4832	chr2R	20739436	intron	dpr +	chr2R	20741852	intron	dpr +	chr2R	20744268	intron	dpr +	chr2R_9_20740001	chr2R_20740001	RAL-382
1398	chr2R	20783261	20783323	chr2R	20788083	20788138	F-element	36	4821	8.5	9.0	8.8	3.7	4877	chr2R	20783261	intergenic	not near genes	chr2R	20785700	intergenic	not near genes	chr2R	20788138	intergenic	CG43666 -	chr2R_36_20785001	chr2R_20785001	RAL-382
1404	chr2R	21151104	21151145	chr2R	21153766	21153828	opus	9	2681	0.0	10.0	5.0	1.5	2724	chr2R	21151104	intron	CG30389 -	chr2R	21152466	intron	CG30389 -	chr2R	21153828	intron	CG30389 -	chr2R_9_21150001	chr2R_21150001	RAL-382
1424	chr2R	21738238	21738287	chr2R	21747448	21747471	roo	10	9197	11.0	8.0	9.5	1.0	9233	chr2R	21738238	intergenic	not near genes	chr2R	21742854	intergenic	not near genes	chr2R	21747471	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	RAL-382
1425	chr2R	21738290	21738306	chr2R	21747436	21747451	roo	9	9175	6.5	7.5	7.0	1.1	9161	chr2R	21738290	intergenic	not near genes	chr2R	21742870	intergenic	not near genes	chr2R	21747451	intergenic	not near genes	chr2R_9_21740001	chr2R_21740001	RAL-382
1426	chr2R	21753041	21753111	chr2R	21753576	21753646	roo	26	533	8.5	10.5	9.5	2.5	605	chr2R	21753041	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753646	intergenic	not near genes	chr2R_26_21750001	chr2R_21750001	RAL-382
1428	chr2R	21809477	21809523	chr2R	21817768	21817803	roo	13	8288	0.0	8.0	4.0	2.6	8326	chr2R	21809477	intergenic	not near genes	chr2R	21813640	intergenic	not near genes	chr2R	21817803	intergenic	not near genes	chr2R_13_21810001	chr2R_21810001	RAL-382
1448	chr2R	22349652	22349668	chr2R	22351486	22351500	jockey	6	1832	21.0	11.0	16.0	0.4	1848	chr2R	22349652	intron	Liprin-gamma -	chr2R	22350576	intron	Liprin-gamma -	chr2R	22351500	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-382
1449	chr2R	22349669	22349712	chr2R	22351482	22351546	jockey	19	1831	12.0	11.0	11.5	1.5	1877	chr2R	22349669	intron	Liprin-gamma -	chr2R	22350608	intron	Liprin-gamma -	chr2R	22351546	intron	Liprin-gamma -	chr2R_19_22350001	chr2R_22350001	RAL-382
1450	chr2R	22360341	22360347	chr2R	22360824	22360830	jockey	6	483	24.5	4.5	14.5	0.4	489	chr2R	22360341	intron	Liprin-gamma -	chr2R	22360586	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-382
1455	chr2R	22465281	22465340	chr2R	22465530	22465589	BS	33	248	10.5	20.0	15.2	2.0	308	chr2R	22465281	intron	CG10384 +	chr2R	22465435	intron	CG10384 +	chr2R	22465589	intron	CG10384 +	chr2R_33_22465001	chr2R_22465001	RAL-382
1457	chr2R	22525706	22525778	chr2R	22529311	22529313	jockey	37	3602	8.5	11.0	9.8	3.4	3607	chr2R	22525706	intron	px -	chr2R	22527510	intron	px -	chr2R	22529313	intron	px -	chr2R_37_22525001	chr2R_22525001	RAL-382
1458	chr2R	22580387	22580444	chr2R	22586581	22586638	diver	34	6194	11.0	6.5	8.8	3.5	6251	chr2R	22580387	intron	dnr1 -	chr2R	22583512	intron	dnr1 -	chr2R	22586638	intron	dnr1 -	chr2R_34_22580001	chr2R_22580001	RAL-382
1466	chr2R	22729414	22729467	chr2R	22729667	22729725	INE-1	22	254	3.5	10.0	6.8	2.8	311	chr2R	22729414	intron	jbug -	chr2R	22729570	intron	jbug -	chr2R	22729725	intron	jbug -	chr2R_22_22725001	chr2R_22725001	RAL-382
1467	chr2R	22774925	22774995	chr2R	22775394	22775405	jockey	22	465	12.0	8.5	10.2	2.0	480	chr2R	22774925	intron	CG42260 -	chr2R	22775165	intron	CG42260 -	chr2R	22775405	intron	CG42260 -	chr2R_22_22775001	chr2R_22775001	RAL-382
1468	chr2R	22843007	22843053	chr2R	22845019	22845065	flea	11	2012	11.0	8.0	9.5	1.0	2058	chr2R	22843007	intergenic	CG9826 +	chr2R	22844036	intergenic	not near genes	chr2R	22845065	intergenic	not near genes	chr2R_11_22840001	chr2R_22840001	RAL-382
1488	chr2R	23402568	23402636	chr2R	23407691	23407762	flea	50	5126	9.0	11.5	10.2	4.5	5194	chr2R	23402568	intergenic	CG3520 -	chr2R	23405165	intergenic	not near genes	chr2R	23407762	intergenic	not near genes	chr2R_50_23405001	chr2R_23405001	RAL-382
1494	chr2R	23529530	23529597	chr2R	23537156	23537188	412	14	7620	6.0	6.5	6.2	1.9	7658	chr2R	23529530	exon	bw -	chr2R	23533359	intron	bw -	chr2R	23537188	exon	bw -	chr2R_14_23530001	chr2R_23530001	RAL-382
1503	chr2R	23914255	23914326	chr2R	23921929	23921978	412	25	7672	7.5	7.5	7.5	2.9	7723	chr2R	23914255	exon	kcc +	chr2R	23918116	intron	kcc +	chr2R	23921978	exon	kcc +	chr2R_25_23915001	chr2R_23915001	RAL-382
1507	chr2R	24147021	24147095	chr2R	24154649	24154698	412	31	7625	5.0	5.5	5.2	5.0	7677	chr2R	24147021	intron	Dat +	chr2R	24150860	intron	Dat +	chr2R	24154698	intron	Dat +	chr2R_31_24150001	chr2R_24150001	RAL-382
1508	chr2R	24177190	24177259	chr2R	24184725	24184794	412	42	7535	10.5	13.0	11.8	3.3	7604	chr2R	24177190	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184794	intron	Nop60B +	chr2R_42_24180001	chr2R_24180001	RAL-382
1515	chr2R	24353384	24353417	chr2R	24361796	24361829	roo	17	8412	21.0	9.0	15.0	1.1	8445	chr2R	24353384	intron,intron	bs +,CR44811 -	chr2R	24357606	intron,intron	bs +,CR44811 -	chr2R	24361829	intron,intron	bs +,CR44811 -	chr2R_17_24355001	chr2R_24355001	RAL-382
1525	chr2R	24647547	24647568	chr2R	24655168	24655189	412	6	7621	8.5	8.0	8.2	0.7	7642	chr2R	24647547	intergenic	not near genes	chr2R	24651368	intergenic	not near genes	chr2R	24655189	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-382
1526	chr2R	24647569	24647612	chr2R	24655155	24655219	412	6	7606	0.0	5.5	2.8	1.6	7650	chr2R	24647569	intergenic	not near genes	chr2R	24651394	intergenic	not near genes	chr2R	24655219	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-382
1528	chr2R	24727841	24727913	chr2R	24735399	24735437	mdg1	19	7550	6.0	11.0	8.5	2.0	7596	chr2R	24727841	intron	Mid1 -	chr2R	24731639	intron	Mid1 -	chr2R	24735437	intron	Mid1 -	chr2R_19_24730001	chr2R_24730001	RAL-382
1529	chr2R	24763595	24763637	chr2R	24765596	24765647	G2	17	2016	4.5	9.0	6.8	2.2	2052	chr2R	24763595	exon	CG3894 +	chr2R	24764621	intron	CG3894 +	chr2R	24765647	exon	CG3894 +	chr2R_17_24760001	chr2R_24760001	RAL-382
1543	chr2R	25141611	25141653	chr2R	25159351	25159393	roo	21	17740	20.5	11.0	15.8	1.2	17782	chr2R	25141611	intergenic	not near genes	chr2R	25150502	intergenic	not near genes	chr2R	25159393	intergenic	not near genes	chr2R_21_25150001	chr2R_25150001	RAL-382
1544	chr2R	25141654	25141677	chr2R	25159340	25159417	roo	13	17736	13.0	10.5	11.8	1.0	17763	chr2R	25141654	intergenic	not near genes	chr2R	25150536	intergenic	not near genes	chr2R	25159417	intergenic	not near genes	chr2R_13_25150001	chr2R_25150001	RAL-382
1552	chr3L	110169	110230	chr3L	119386	119446	roo	30	9216	14.0	11.0	12.5	2.2	9277	chr3L	110169	intergenic	not near genes	chr3L	114808	intergenic	not near genes	chr3L	119446	intergenic	not near genes	chr3L_30_110001	chr3L_110001	RAL-382
1557	chr3L	402658	402668	chr3L	409761	409770	297	4	7103	11.5	11.5	11.5	0.3	7112	chr3L	402658	intergenic	not near genes	chr3L	406214	intergenic	not near genes	chr3L	409770	intergenic	not near genes	chr3L_4_405001	chr3L_405001	RAL-382
1558	chr3L	402670	402714	chr3L	409742	409802	297	23	7093	5.0	8.0	6.5	3.1	7132	chr3L	402670	intergenic	not near genes	chr3L	406236	intergenic	not near genes	chr3L	409802	intergenic	not near genes	chr3L_23_405001	chr3L_405001	RAL-382
1575	chr3L	789869	789931	chr3L	790404	790466	roo	17	533	9.5	8.5	9.0	1.7	597	chr3L	789869	intergenic	not near genes	chr3L	790168	intergenic	not near genes	chr3L	790466	intergenic	not near genes	chr3L_17_790001	chr3L_790001	RAL-382
1576	chr3L	857972	858025	chr3L	866483	866550	Tirant	11	8516	7.5	10.0	8.8	1.1	8578	chr3L	857972	intergenic	not near genes	chr3L	862261	intergenic	not near genes	chr3L	866550	5` UTR	CG12502 +	chr3L_11_860001	chr3L_860001	RAL-382
1578	chr3L	925130	925197	chr3L	932606	932627	mdg1	31	7473	6.5	10.0	8.2	3.4	7497	chr3L	925130	intron	Glut1 +	chr3L	928878	intron	Glut1 +	chr3L	932627	intron	Glut1 +	chr3L_31_925001	chr3L_925001	RAL-382
1581	chr3L	939734	939789	chr3L	940904	940960	jockey	19	1168	6.0	11.5	8.8	1.9	1226	chr3L	939734	intron	Glut1 +	chr3L	940347	intron	Glut1 +	chr3L	940960	intron	Glut1 +	chr3L_19_940001	chr3L_940001	RAL-382
1587	chr3L	1047317	1047340	chr3L	1055168	1055195	412	5	7858	19.5	10.5	15.0	0.3	7878	chr3L	1047317	intron	bab1 -	chr3L	1051256	intron	bab1 -	chr3L	1055195	intron	bab1 -	chr3L_5_1050001	chr3L_1050001	RAL-382
1588	chr3L	1047341	1047385	chr3L	1055167	1055190	412	22	7841	9.5	10.5	10.0	2.0	7849	chr3L	1047341	intron	bab1 -	chr3L	1051266	intron	bab1 -	chr3L	1055190	intron	bab1 -	chr3L_22_1050001	chr3L_1050001	RAL-382
1590	chr3L	1154079	1154159	chr3L	1163282	1163359	roo	27	9200	9.0	9.0	9.0	2.7	9280	chr3L	1154079	intron	bab2 -	chr3L	1158719	intron	bab2 -	chr3L	1163359	intron	bab2 -	chr3L_27_1155001	chr3L_1155001	RAL-382
1596	chr3L	1219548	1219608	chr3L	1227329	1227391	412	24	7782	7.0	8.5	7.8	2.7	7843	chr3L	1219548	intron	mwh +	chr3L	1223470	intron	mwh +	chr3L	1227391	intron	mwh +	chr3L_24_1220001	chr3L_1220001	RAL-382
1605	chr3L	1424760	1424769	chr3L	1430048	1430060	Rt1a	4	5293	0.0	9.5	4.8	0.7	5300	chr3L	1424760	intron	Ptp61F -	chr3L	1427410	intron	Ptp61F -	chr3L	1430060	intron	Ptp61F -	chr3L_4_1425001	chr3L_1425001	RAL-382
1610	chr3L	1485692	1485730	chr3L	1486909	1486947	1360	8	1215	9.5	14.0	11.8	0.6	1255	chr3L	1485692	intron	stet -	chr3L	1486320	intron	stet -	chr3L	1486947	intron	stet -	chr3L_8_1485001	chr3L_1485001	RAL-382
1611	chr3L	1505964	1506028	chr3L	1513599	1513672	17.6	20	7645	6.5	8.0	7.2	2.4	7708	chr3L	1505964	intron,intron	Psa +,cue -	chr3L	1509818	intron,intron	Psa +,cue -	chr3L	1513672	intron,intron	Psa +,cue -	chr3L_20_1505001	chr3L_1505001	RAL-382
1620	chr3L	1740817	1740823	chr3L	1741105	1741116	pogo	4	290	27.0	15.5	21.2	0.2	299	chr3L	1740817	intron	Gk +	chr3L	1740966	intron	Gk +	chr3L	1741116	intron	Gk +	chr3L_4_1740001	chr3L_1740001	RAL-382
1621	chr3L	1740824	1740849	chr3L	1741104	1741118	pogo	12	281	18.0	15.0	16.5	0.7	294	chr3L	1740824	intron	Gk +	chr3L	1740971	intron	Gk +	chr3L	1741118	intron	Gk +	chr3L_12_1740001	chr3L_1740001	RAL-382
1622	chr3L	1740850	1740883	chr3L	1741096	1741175	pogo	14	277	10.5	12.5	11.5	1.1	325	chr3L	1740850	intron	Gk +	chr3L	1741012	intron	Gk +	chr3L	1741175	intron	Gk +	chr3L_14_1740001	chr3L_1740001	RAL-382
1636	chr3L	2108207	2108271	chr3L	2113461	2113525	copia	30	5254	14.5	13.0	13.8	2.0	5318	chr3L	2108207	intron	sls -	chr3L	2110866	intron	sls -	chr3L	2113525	intron	sls -	chr3L_30_2110001	chr3L_2110001	RAL-382
1646	chr3L	2447460	2447485	chr3L	2456666	2456681	roo	8	9205	18.5	9.5	14.0	0.5	9221	chr3L	2447460	intron	CG45186 +	chr3L	2452070	intron	CG45186 +	chr3L	2456681	intron	CG45186 +	chr3L_8_2450001	chr3L_2450001	RAL-382
1647	chr3L	2447487	2447537	chr3L	2456662	2456695	roo	24	9196	8.0	7.5	7.8	2.7	9208	chr3L	2447487	intron	CG45186 +	chr3L	2452091	intron	CG45186 +	chr3L	2456695	intron	CG45186 +	chr3L_24_2450001	chr3L_2450001	RAL-382
1663	chr3L	2751412	2751456	chr3L	2755757	2755796	F-element	26	4345	17.5	23.0	20.2	1.2	4384	chr3L	2751412	intron	Mrtf -	chr3L	2753604	intron	Mrtf -	chr3L	2755796	intron	Mrtf -	chr3L_26_2750001	chr3L_2750001	RAL-382
1670	chr3L	2927795	2927870	chr3L	2936122	2936176	Tirant	32	8326	7.0	11.0	9.0	3.2	8381	chr3L	2927795	intron	Shab +	chr3L	2931986	intron	Shab +	chr3L	2936176	intron	Shab +	chr3L_32_2930001	chr3L_2930001	RAL-382
1672	chr3L	2966680	2966720	chr3L	2974157	2974200	mdg1	14	7478	12.5	3.0	7.8	1.6	7520	chr3L	2966680	intergenic	not near genes	chr3L	2970440	intergenic	not near genes	chr3L	2974200	intergenic	not near genes	chr3L_14_2970001	chr3L_2970001	RAL-382
1675	chr3L	3040276	3040355	chr3L	3042115	3042139	S-element	18	1836	7.0	1.5	4.2	3.5	1863	chr3L	3040276	3` UTR	CG2162 +	chr3L	3041208	intergenic	not near genes	chr3L	3042139	intergenic	Jafrac2 +	chr3L_18_3040001	chr3L_3040001	RAL-382
1676	chr3L	3051717	3051755	chr3L	3051989	3052026	pogo	7	280	8.0	11.5	9.8	0.6	309	chr3L	3051717	3` UTR	CG32485 +	chr3L	3051872	intergenic	CG32485 +	chr3L	3052026	intergenic	CG32485 +,CG1271 +	chr3L_7_3050001	chr3L_3050001	RAL-382
1682	chr3L	3281398	3281446	chr3L	3281943	3281990	Doc	11	538	7.5	6.5	7.0	1.4	592	chr3L	3281398	intron	CG12017 +	chr3L	3281694	intron	CG12017 +	chr3L	3281990	intron	CG12017 +	chr3L_11_3280001	chr3L_3280001	RAL-382
1690	chr3L	3475037	3475059	chr3L	3475531	3475553	jockey	7	494	14.5	6.5	10.5	0.6	516	chr3L	3475037	intron	CG42324 +	chr3L	3475295	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_7_3475001	chr3L_3475001	RAL-382
1691	chr3L	3475066	3475074	chr3L	3475520	3475562	jockey	4	475	12.0	6.0	9.0	0.4	496	chr3L	3475066	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475562	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-382
1697	chr3L	3601269	3601330	chr3L	3606630	3606684	copia	17	5357	5.0	8.0	6.5	2.3	5415	chr3L	3601269	intron	Eip63E +	chr3L	3603976	intron	Eip63E +	chr3L	3606684	intron	Eip63E +	chr3L_17_3600001	chr3L_3600001	RAL-382
1708	chr3L	3833690	3833770	chr3L	3833981	3834061	pogo	24	291	5.5	6.0	5.8	3.5	371	chr3L	3833690	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834061	intron	enc +	chr3L_24_3830001	chr3L_3830001	RAL-382
1723	chr3L	4328693	4328756	chr3L	4336241	4336304	412	26	7547	8.0	10.5	9.2	2.5	7611	chr3L	4328693	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336304	exon	Cip4 -	chr3L_26_4330001	chr3L_4330001	RAL-382
1741	chr3L	4901084	4901151	chr3L	4907324	4907391	diver	13	6239	9.0	4.5	6.8	1.7	6307	chr3L	4901084	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907391	intergenic	not near genes	chr3L_13_4900001	chr3L_4900001	RAL-382
1744	chr3L	5034125	5034154	chr3L	5043327	5043356	roo	16	9202	10.0	11.0	10.5	1.4	9231	chr3L	5034125	intron	Con -	chr3L	5038740	intron	Con -	chr3L	5043356	intron	Con -	chr3L_16_5035001	chr3L_5035001	RAL-382
1745	chr3L	5034155	5034190	chr3L	5043317	5043392	roo	16	9197	8.0	8.5	8.2	1.7	9237	chr3L	5034155	intron	Con -	chr3L	5038774	intron	Con -	chr3L	5043392	intron	Con -	chr3L_16_5035001	chr3L_5035001	RAL-382
1746	chr3L	5045413	5045474	chr3L	5050244	5050305	Doc	31	4830	14.0	12.0	13.0	2.2	4892	chr3L	5045413	5` UTR	Con -	chr3L	5047859	intron	Con -	chr3L	5050305	intron	Con -	chr3L_31_5045001	chr3L_5045001	RAL-382
1773	chr3L	5458092	5458093	chr3L	5466722	5466745	Max-element	5	8643	0.5	13.0	6.8	0.6	8653	chr3L	5458092	intergenic	not near genes	chr3L	5462418	intergenic	not near genes	chr3L	5466745	intergenic	not near genes	chr3L_5_5460001	chr3L_5460001	RAL-382
1777	chr3L	5537678	5537754	chr3L	5538070	5538120	jockey	26	388	9.5	6.0	7.8	3.0	442	chr3L	5537678	intergenic	not near genes	chr3L	5537899	intergenic	not near genes	chr3L	5538120	intergenic	CG10625 -	chr3L_26_5535001	chr3L_5535001	RAL-382
1785	chr3L	5909989	5909995	chr3L	5910280	5910286	pogo	4	291	28.0	10.5	19.2	0.2	297	chr3L	5909989	intron	CG13288 +	chr3L	5910138	intron	CG13288 +	chr3L	5910286	intron	CG13288 +	chr3L_4_5910001	chr3L_5910001	RAL-382
1786	chr3L	5909997	5910055	chr3L	5910272	5910346	pogo	29	288	11.0	9.0	10.0	2.6	349	chr3L	5909997	intron	CG13288 +	chr3L	5910172	intron	CG13288 +	chr3L	5910346	intron	CG13288 +	chr3L_29_5910001	chr3L_5910001	RAL-382
1790	chr3L	5926311	5926316	chr3L	5926510	5926551	BS	6	219	13.5	4.0	8.8	0.6	240	chr3L	5926311	intron	Vap-33B +	chr3L	5926431	intron	Vap-33B +	chr3L	5926551	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-382
1791	chr3L	5926319	5926345	chr3L	5926509	5926587	BS	10	224	6.0	3.5	4.8	1.7	268	chr3L	5926319	intron	Vap-33B +	chr3L	5926453	intron	Vap-33B +	chr3L	5926587	intron	Vap-33B +	chr3L_10_5925001	chr3L_5925001	RAL-382
1792	chr3L	6001644	6001713	chr3L	6004394	6004463	jockey	26	2750	7.0	7.0	7.0	3.2	2819	chr3L	6001644	intron	PVRAP +	chr3L	6003054	intron	PVRAP +	chr3L	6004463	intron	PVRAP +	chr3L_26_6000001	chr3L_6000001	RAL-382
1796	chr3L	6040290	6040393	chr3L	6042723	6042772	Doc	33	2411	0.5	8.0	4.2	6.3	2482	chr3L	6040290	intergenic	Jon65Aiv +	chr3L	6041531	intergenic	not near genes	chr3L	6042772	intergenic	not near genes	chr3L_33_6040001	chr3L_6040001	RAL-382
1805	chr3L	6220875	6220885	chr3L	6230077	6230087	roo	5	9202	23.0	11.5	17.2	0.3	9212	chr3L	6220875	5` UTR	pncr008:3L +	chr3L	6225481	intergenic	not near genes	chr3L	6230087	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-382
1806	chr3L	6220888	6220941	chr3L	6230065	6230143	roo	27	9200	10.0	9.0	9.5	2.6	9255	chr3L	6220888	5` UTR	pncr008:3L +	chr3L	6225516	intergenic	not near genes	chr3L	6230143	intergenic	not near genes	chr3L_27_6225001	chr3L_6225001	RAL-382
1809	chr3L	6334964	6334973	chr3L	6335485	6335494	297	4	521	13.5	11.5	12.5	0.3	530	chr3L	6334964	intron	CG13300 -	chr3L	6335229	intron	CG13300 -	chr3L	6335494	intron	CG13300 -	chr3L_4_6335001	chr3L_6335001	RAL-382
1810	chr3L	6334974	6335032	chr3L	6335481	6335553	297	24	519	7.0	10.5	8.8	2.4	579	chr3L	6334974	intron	CG13300 -	chr3L	6335264	intron	CG13300 -	chr3L	6335553	intron	CG13300 -	chr3L_24_6335001	chr3L_6335001	RAL-382
1811	chr3L	6405619	6405677	chr3L	6432133	6432191	roo	32	26514	8.5	11.5	10.0	2.9	26572	chr3L	6405619	intron	CG42747 +	chr3L	6418905	intron	CG42747 +	chr3L	6432191	intron	CG42747 +	chr3L_32_6415001	chr3L_6415001	RAL-382
1820	chr3L	6620564	6620598	chr3L	6621054	6621086	Rt1c	12	489	9.5	17.0	13.2	0.8	522	chr3L	6620564	intergenic	not near genes	chr3L	6620825	intergenic	not near genes	chr3L	6621086	intergenic	not near genes	chr3L_12_6620001	chr3L_6620001	RAL-382
1824	chr3L	6781075	6781139	chr3L	6783138	6783202	Doc	39	2063	13.5	11.5	12.5	2.9	2127	chr3L	6781075	intergenic	not near genes	chr3L	6782138	intergenic	not near genes	chr3L	6783202	intergenic	not near genes	chr3L_39_6780001	chr3L_6780001	RAL-382
1829	chr3L	6855887	6855956	chr3L	6860716	6860733	Doc	13	4828	2.5	5.0	3.8	2.7	4846	chr3L	6855887	intergenic	not near genes	chr3L	6858310	intergenic	not near genes	chr3L	6860733	intergenic	not near genes	chr3L_13_6855001	chr3L_6855001	RAL-382
1830	chr3L	6887473	6887515	chr3L	6895015	6895057	roo	31	7540	12.5	7.5	10.0	2.8	7584	chr3L	6887473	intergenic	not near genes	chr3L	6891265	intergenic	not near genes	chr3L	6895057	intergenic	not near genes	chr3L_31_6890001	chr3L_6890001	RAL-382
1838	chr3L	6994845	6994906	chr3L	6995496	6995567	BS	18	657	1.5	6.0	3.8	3.8	722	chr3L	6994845	intergenic	bin +	chr3L	6995206	intergenic	not near genes	chr3L	6995567	intergenic	not near genes	chr3L_18_6995001	chr3L_6995001	RAL-382
1854	chr3L	7377260	7377341	chr3L	7380422	7380481	297	30	3160	5.0	7.5	6.2	4.2	3221	chr3L	7377260	intron	SMSr -	chr3L	7378870	intron	SMSr -	chr3L	7380481	intron	SMSr -	chr3L_30_7375001	chr3L_7375001	RAL-382
1860	chr3L	7498718	7498776	chr3L	7503544	7503603	F-element	33	4827	12.0	13.5	12.8	2.4	4885	chr3L	7498718	5` UTR	CG8539 -	chr3L	7501160	intergenic	not near genes	chr3L	7503603	intergenic	not near genes	chr3L_33_7500001	chr3L_7500001	RAL-382
1870	chr3L	7793672	7793735	chr3L	7800773	7800837	297	28	7101	13.5	9.5	11.5	2.2	7165	chr3L	7793672	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800837	intron	CG32369 -	chr3L_28_7795001	chr3L_7795001	RAL-382
1877	chr3L	7886517	7886542	chr3L	7889086	7889101	Stalker4	14	2568	1.0	23.5	12.2	1.1	2584	chr3L	7886517	intron	CG32365 +	chr3L	7887809	intron	CG32365 +	chr3L	7889101	intron	CG32365 +	chr3L_14_7885001	chr3L_7885001	RAL-382
1879	chr3L	7916784	7916851	chr3L	7926005	7926072	roo	37	9221	14.5	14.0	14.2	2.4	9288	chr3L	7916784	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926072	3` UTR	syd -	chr3L_37_7920001	chr3L_7920001	RAL-382
1880	chr3L	7985326	7985335	chr3L	7987704	7987713	NOF	5	2378	27.5	12.0	19.8	0.2	2387	chr3L	7985326	intron	nmo +	chr3L	7986520	intron	nmo +	chr3L	7987713	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-382
1881	chr3L	7985339	7985386	chr3L	7987699	7987758	NOF	23	2375	14.5	11.0	12.8	1.7	2419	chr3L	7985339	intron	nmo +	chr3L	7986548	intron	nmo +	chr3L	7987758	intron	nmo +	chr3L_23_7985001	chr3L_7985001	RAL-382
1887	chr3L	8233540	8233578	chr3L	8238854	8238890	Rt1a	14	5310	11.0	11.0	11.0	1.2	5350	chr3L	8233540	intron	CG7213 -	chr3L	8236215	intron	CG7213 -	chr3L	8238890	intron,intron	CG7213 -,Dscam4 +	chr3L_14_8235001	chr3L_8235001	RAL-382
1895	chr3L	8481768	8481805	chr3L	8490929	8490964	roo	9	9172	6.5	5.0	5.8	1.3	9196	chr3L	8481768	intron	CG43163 -	chr3L	8486366	intron	CG43163 -	chr3L	8490964	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	RAL-382
1896	chr3L	8498259	8498262	chr3L	8505776	8505779	blood	4	7517	27.0	13.5	20.2	0.2	7520	chr3L	8498259	intron	CG43163 -	chr3L	8502019	intron	CG43163 -	chr3L	8505779	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-382
1897	chr3L	8498269	8498321	chr3L	8505769	8505837	blood	23	7516	11.0	13.0	12.0	1.8	7568	chr3L	8498269	intron	CG43163 -	chr3L	8502053	intron	CG43163 -	chr3L	8505837	intron	CG43163 -	chr3L_23_8500001	chr3L_8500001	RAL-382
1904	chr3L	8791283	8791304	chr3L	8796752	8796773	I-element	13	5469	10.0	14.0	12.0	1.0	5490	chr3L	8791283	exon	Fhos +	chr3L	8794028	intron	Fhos +	chr3L	8796773	intron	Fhos +	chr3L_13_8790001	chr3L_8790001	RAL-382
1919	chr3L	9076894	9076959	chr3L	9084775	9084843	412	15	7884	8.5	7.0	7.8	1.7	7949	chr3L	9076894	exon	Tequila +	chr3L	9080868	intron	Tequila +	chr3L	9084843	exon	Tequila +	chr3L_15_9080001	chr3L_9080001	RAL-382
1921	chr3L	9130520	9130576	chr3L	9134331	9134352	412	16	3801	5.5	7.0	6.2	2.2	3832	chr3L	9130520	intergenic	bol -	chr3L	9132436	intergenic	not near genes	chr3L	9134352	intergenic	Dhpr +	chr3L_16_9130001	chr3L_9130001	RAL-382
1922	chr3L	9164656	9164682	chr3L	9166173	9166199	hobo	21	1517	18.0	0.0	9.0	2.1	1543	chr3L	9164656	intron	Rdl -	chr3L	9165428	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_21_9165001	chr3L_9165001	RAL-382
1924	chr3L	9219209	9219211	chr3L	9219931	9219933	jockey	4	722	17.5	10.0	13.8	0.3	724	chr3L	9219209	intergenic	not near genes	chr3L	9219571	intergenic	not near genes	chr3L	9219933	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-382
1925	chr3L	9219214	9219265	chr3L	9219921	9219960	jockey	19	715	9.5	10.0	9.8	1.8	746	chr3L	9219214	intergenic	not near genes	chr3L	9219587	intergenic	not near genes	chr3L	9219960	intergenic	not near genes	chr3L_19_9215001	chr3L_9215001	RAL-382
1928	chr3L	9270575	9270650	chr3L	9278380	9278409	roo	20	7800	8.0	7.0	7.5	2.4	7834	chr3L	9270575	intron	GluRIB +	chr3L	9274492	intron	GluRIB +	chr3L	9278409	exon	GluRIB +	chr3L_20_9270001	chr3L_9270001	RAL-382
1933	chr3L	9443490	9443527	chr3L	9445331	9445368	S-element	11	1841	11.0	15.0	13.0	0.8	1878	chr3L	9443490	intron	CG33926 +	chr3L	9444429	intron	CG33926 +	chr3L	9445368	intron	CG33926 +	chr3L_11_9440001	chr3L_9440001	RAL-382
1934	chr3L	9501658	9501734	chr3L	9502193	9502248	roo	16	527	9.5	0.5	5.0	2.7	590	chr3L	9501658	intron	path -	chr3L	9501953	intron	path -	chr3L	9502248	intron	path -	chr3L_16_9500001	chr3L_9500001	RAL-382
1938	chr3L	9526445	9526501	chr3L	9528175	9528231	Doc	30	1730	13.5	9.5	11.5	2.4	1786	chr3L	9526445	intergenic	not near genes	chr3L	9527338	intergenic	not near genes	chr3L	9528231	intergenic	not near genes	chr3L_30_9525001	chr3L_9525001	RAL-382
1939	chr3L	9533716	9533783	chr3L	9541325	9541361	412	16	7595	5.0	11.5	8.2	1.7	7645	chr3L	9533716	intergenic	not near genes	chr3L	9537538	intergenic	not near genes	chr3L	9541361	intergenic	not near genes	chr3L_16_9535001	chr3L_9535001	RAL-382
1941	chr3L	9575867	9575894	chr3L	9580995	9581002	jockey	11	5125	18.5	7.0	12.8	0.8	5135	chr3L	9575867	intron	CG42673 +	chr3L	9578434	intron	CG42673 +	chr3L	9581002	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	RAL-382
1942	chr3L	9575904	9575938	chr3L	9580985	9581067	jockey	15	5122	8.5	4.0	6.2	2.1	5163	chr3L	9575904	intron	CG42673 +	chr3L	9578486	intron	CG42673 +	chr3L	9581067	intron	CG42673 +	chr3L_15_9575001	chr3L_9575001	RAL-382
1948	chr3L	9929627	9929635	chr3L	9938452	9938464	roo	4	8828	19.0	9.5	14.2	0.3	8837	chr3L	9929627	intron	CG34356 +	chr3L	9934046	intron	CG34356 +	chr3L	9938464	intron	CG34356 +	chr3L_4_9930001	chr3L_9930001	RAL-382
1949	chr3L	9929639	9929699	chr3L	9938449	9938470	roo	26	8821	10.0	8.5	9.2	2.5	8831	chr3L	9929639	intron	CG34356 +	chr3L	9934054	intron	CG34356 +	chr3L	9938470	intron	CG34356 +	chr3L_26_9930001	chr3L_9930001	RAL-382
1953	chr3L	10060078	10060117	chr3L	10067706	10067746	17.6	14	7628	15.5	15.0	15.2	0.9	7668	chr3L	10060078	intron	dpr6 +	chr3L	10063912	intron	dpr6 +	chr3L	10067746	intron	dpr6 +	chr3L_14_10060001	chr3L_10060001	RAL-382
1963	chr3L	10414894	10414968	chr3L	10417314	10417363	Doc	19	2418	7.5	6.5	7.0	2.4	2469	chr3L	10414894	intergenic	CG12362 +	chr3L	10416128	intergenic	not near genes	chr3L	10417363	intergenic	not near genes	chr3L_19_10415001	chr3L_10415001	RAL-382
2004	chr3L	11086990	11087084	chr3L	11088846	11088912	S-element	18	1845	0.0	5.0	2.5	5.1	1922	chr3L	11086990	intron	JIL-1 -	chr3L	11087951	intron	JIL-1 -	chr3L	11088912	intron	JIL-1 -	chr3L_18_11085001	chr3L_11085001	RAL-382
2007	chr3L	11105256	11105318	chr3L	11107017	11107078	X-element	19	1760	15.0	8.0	11.5	1.5	1822	chr3L	11105256	intergenic	not near genes	chr3L	11106167	intergenic	not near genes	chr3L	11107078	exon	CG32073 -	chr3L_19_11105001	chr3L_11105001	RAL-382
2015	chr3L	11264430	11264489	chr3L	11271417	11271486	17.6	23	6999	7.5	7.0	7.2	2.8	7056	chr3L	11264430	intergenic	not near genes	chr3L	11267958	intergenic	not near genes	chr3L	11271486	intergenic	not near genes	chr3L_23_11265001	chr3L_11265001	RAL-382
2018	chr3L	11329655	11329664	chr3L	11332910	11332919	jockey	4	3255	9.5	8.0	8.8	0.4	3264	chr3L	11329655	intergenic	not near genes	chr3L	11331287	intergenic	not near genes	chr3L	11332919	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-382
2019	chr3L	11329669	11329721	chr3L	11332903	11332924	jockey	16	3246	8.0	7.0	7.5	1.9	3255	chr3L	11329669	intergenic	not near genes	chr3L	11331296	intergenic	not near genes	chr3L	11332924	intergenic	not near genes	chr3L_16_11330001	chr3L_11330001	RAL-382
2037	chr3L	11723047	11723106	chr3L	11727892	11727951	Doc	28	4844	14.5	10.0	12.2	2.1	4904	chr3L	11723047	3` UTR	Bmcp +	chr3L	11725499	intron	Bmcp +	chr3L	11727951	3` UTR	Bmcp +	chr3L_28_11725001	chr3L_11725001	RAL-382
2088	chr3L	12874877	12874948	chr3L	12877219	12877290	jockey	36	2340	6.5	6.0	6.2	5.0	2413	chr3L	12874877	intergenic	not near genes	chr3L	12876084	intergenic	not near genes	chr3L	12877290	intergenic	not near genes	chr3L_36_12875001	chr3L_12875001	RAL-382
2090	chr3L	12919232	12919237	chr3L	12924766	12924771	Rt1c	6	5534	29.0	5.0	17.0	0.3	5539	chr3L	12919232	intergenic	not near genes	chr3L	12922002	intergenic	not near genes	chr3L	12924771	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-382
2091	chr3L	12919242	12919303	chr3L	12924765	12924837	Rt1c	11	5522	10.0	5.0	7.5	1.3	5595	chr3L	12919242	intergenic	not near genes	chr3L	12922040	intergenic	not near genes	chr3L	12924837	intergenic	not near genes	chr3L_11_12920001	chr3L_12920001	RAL-382
2092	chr3L	12957742	12957812	chr3L	12962274	12962329	copia	26	4527	12.5	7.5	10.0	2.4	4587	chr3L	12957742	intergenic	not near genes	chr3L	12960036	intergenic	not near genes	chr3L	12962329	intergenic	not near genes	chr3L_26_12960001	chr3L_12960001	RAL-382
2116	chr3L	13525119	13525133	chr3L	13532965	13532979	roo	9	7845	14.0	16.0	15.0	0.6	7860	chr3L	13525119	intergenic	not near genes	chr3L	13529049	intergenic	not near genes	chr3L	13532979	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	RAL-382
2117	chr3L	13525134	13525179	chr3L	13532957	13533025	roo	24	7843	9.0	14.5	11.8	1.9	7891	chr3L	13525134	intergenic	not near genes	chr3L	13529080	intergenic	not near genes	chr3L	13533025	intergenic	not near genes	chr3L_24_13525001	chr3L_13525001	RAL-382
2121	chr3L	13804508	13804571	chr3L	13822834	13822862	roo	25	18332	11.5	10.5	11.0	2.1	18354	chr3L	13804508	intergenic	not near genes	chr3L	13813685	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_25_13810001	chr3L_13810001	RAL-382
2144	chr3L	14245550	14245591	chr3L	14245662	14245735	1360	20	139	7.5	7.0	7.2	2.4	185	chr3L	14245550	3` UTR	CR44561 -	chr3L	14245642	3` UTR	CR44561 -	chr3L	14245735	intergenic	CR44561 -,CR44560 +	chr3L_20_14245001	chr3L_14245001	RAL-382
2145	chr3L	14267359	14267399	chr3L	14271821	14271861	F-element	24	4462	7.5	0.0	3.8	5.0	4502	chr3L	14267359	intergenic	not near genes	chr3L	14269610	intergenic	not near genes	chr3L	14271861	intergenic	not near genes	chr3L_24_14265001	chr3L_14265001	RAL-382
2148	chr3L	14295940	14295963	chr3L	14296476	14296499	roo	11	536	16.5	11.0	13.8	0.7	559	chr3L	14295940	intron	fz +	chr3L	14296220	intron	fz +	chr3L	14296499	intron	fz +	chr3L_11_14295001	chr3L_14295001	RAL-382
2149	chr3L	14295968	14296006	chr3L	14296474	14296542	roo	15	529	9.5	10.5	10.0	1.4	574	chr3L	14295968	intron	fz +	chr3L	14296255	intron	fz +	chr3L	14296542	intron	fz +	chr3L_15_14295001	chr3L_14295001	RAL-382
2150	chr3L	14311984	14312045	chr3L	14316844	14316892	X-element	14	4858	5.0	9.0	7.0	1.8	4908	chr3L	14311984	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316892	intron	fz +	chr3L_14_14310001	chr3L_14310001	RAL-382
2157	chr3L	14468409	14468475	chr3L	14473665	14473731	copia	31	5255	11.5	9.0	10.2	2.8	5322	chr3L	14468409	intron	bbg -	chr3L	14471070	intron	bbg -	chr3L	14473731	intron	bbg -	chr3L_31_14470001	chr3L_14470001	RAL-382
2161	chr3L	14524292	14524340	chr3L	14529097	14529147	F-element	5	4806	4.5	0.5	2.5	1.4	4855	chr3L	14524292	intron	bbg -	chr3L	14526720	intron	bbg -	chr3L	14529147	intron	bbg -	chr3L_5_14525001	chr3L_14525001	RAL-382
2169	chr3L	14721152	14721189	chr3L	14723045	14723062	Rt1c	10	1889	7.0	5.5	6.2	1.4	1910	chr3L	14721152	intron	ome +	chr3L	14722107	intron	ome +	chr3L	14723062	intron	ome +	chr3L_10_14720001	chr3L_14720001	RAL-382
2170	chr3L	14721190	14721201	chr3L	14723025	14723094	Rt1c	8	1881	5.5	3.0	4.2	1.5	1904	chr3L	14721190	intron	ome +	chr3L	14722142	intron	ome +	chr3L	14723094	intron	ome +	chr3L_8_14720001	chr3L_14720001	RAL-382
2171	chr3L	14725522	14725613	chr3L	14728585	14728637	Doc	21	3052	0.0	8.5	4.2	4.0	3115	chr3L	14725522	intron	ome +	chr3L	14727080	intron	ome +	chr3L	14728637	intron	ome +	chr3L_21_14725001	chr3L_14725001	RAL-382
2173	chr3L	14825128	14825154	chr3L	14832905	14832931	Stalker2	17	7777	5.0	20.0	12.5	1.3	7803	chr3L	14825128	intron	CG17839 +	chr3L	14829030	intron	CG17839 +	chr3L	14832931	intron	CG17839 +	chr3L_17_14825001	chr3L_14825001	RAL-382
2177	chr3L	14954320	14954352	chr3L	14956039	14956071	transib2	16	1719	16.0	10.0	13.0	1.1	1751	chr3L	14954320	intergenic	not near genes	chr3L	14955196	intergenic	not near genes	chr3L	14956071	intergenic	not near genes	chr3L_16_14955001	chr3L_14955001	RAL-382
2178	chr3L	14954353	14954389	chr3L	14956038	14956108	transib2	19	1717	10.5	10.0	10.2	1.7	1755	chr3L	14954353	intergenic	not near genes	chr3L	14955230	intergenic	not near genes	chr3L	14956108	intergenic	not near genes	chr3L_19_14955001	chr3L_14955001	RAL-382
2180	chr3L	14970714	14970763	chr3L	14971074	14971123	F-element	29	360	12.0	12.0	12.0	2.2	409	chr3L	14970714	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971123	intergenic	not near genes	chr3L_29_14970001	chr3L_14970001	RAL-382
2185	chr3L	15085003	15085078	chr3L	15086219	15086294	1360	37	1216	11.5	11.0	11.2	3.0	1291	chr3L	15085003	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086294	intron	cp309 -	chr3L_37_15085001	chr3L_15085001	RAL-382
2194	chr3L	15295717	15295779	chr3L	15298610	15298672	gypsy5	42	2892	12.5	9.5	11.0	3.5	2955	chr3L	15295717	intergenic	not near genes	chr3L	15297194	intergenic	not near genes	chr3L	15298672	intergenic	Best4 +	chr3L_42_15295001	chr3L_15295001	RAL-382
2199	chr3L	15423720	15423732	chr3L	15426614	15426626	opus	9	2894	13.5	1.0	7.2	1.1	2906	chr3L	15423720	intergenic	not near genes	chr3L	15425173	intergenic	not near genes	chr3L	15426626	intergenic	not near genes	chr3L_9_15425001	chr3L_15425001	RAL-382
2200	chr3L	15423733	15423782	chr3L	15426611	15426676	opus	23	2893	5.5	1.0	3.2	5.5	2943	chr3L	15423733	intergenic	not near genes	chr3L	15425204	intergenic	not near genes	chr3L	15426676	intergenic	not near genes	chr3L_23_15425001	chr3L_15425001	RAL-382
2225	chr3L	15899202	15899223	chr3L	15899799	15899840	jockey	8	607	5.5	8.0	6.8	1.0	638	chr3L	15899202	intergenic	pHCl -	chr3L	15899521	intergenic	pHCl -	chr3L	15899840	intergenic	sff -	chr3L_8_15895001	chr3L_15895001	RAL-382
2226	chr3L	15899225	15899263	chr3L	15899790	15899879	jockey	10	593	2.0	6.0	4.0	2.0	654	chr3L	15899225	intergenic	pHCl -	chr3L	15899552	intergenic	not near genes	chr3L	15899879	intergenic	sff -	chr3L_10_15895001	chr3L_15895001	RAL-382
2227	chr3L	15929152	15929219	chr3L	15938345	15938416	roo	17	9193	2.5	10.0	6.2	2.4	9264	chr3L	15929152	intron	Pka-C3 -	chr3L	15933784	intron	Pka-C3 -	chr3L	15938416	intron	Pka-C3 -	chr3L_17_15930001	chr3L_15930001	RAL-382
2231	chr3L	16184062	16184129	chr3L	16188931	16188997	X-element	29	4866	8.0	8.0	8.0	3.2	4935	chr3L	16184062	intergenic	not near genes	chr3L	16186530	intergenic	not near genes	chr3L	16188997	intergenic	not near genes	chr3L_29_16185001	chr3L_16185001	RAL-382
2239	chr3L	16443798	16443877	chr3L	16446190	16446267	Doc	28	2388	5.5	7.5	6.5	3.7	2469	chr3L	16443798	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446267	intron,intron	CG33158 +,dsx-c73A -	chr3L_28_16445001	chr3L_16445001	RAL-382
2240	chr3L	16493940	16494003	chr3L	16494507	16494545	jockey	26	565	5.5	13.0	9.2	2.5	605	chr3L	16493940	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494545	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_26_16490001	chr3L_16490001	RAL-382
2249	chr3L	16616464	16616535	chr3L	16621842	16621887	297	38	5373	9.5	6.5	8.0	4.2	5423	chr3L	16616464	3` UTR	Abl -	chr3L	16619176	3` UTR	Abl -	chr3L	16621887	3` UTR	Abl -	chr3L_38_16615001	chr3L_16615001	RAL-382
2253	chr3L	16683981	16684038	chr3L	16689252	16689309	copia	35	5271	9.5	14.5	12.0	2.7	5328	chr3L	16683981	intron,intron	Lasp -,CG43954 -	chr3L	16686645	intron,intron	Lasp -,CG43954 -	chr3L	16689309	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_35_16685001	chr3L_16685001	RAL-382
2263	chr3L	16945686	16945691	chr3L	16954889	16954894	roo	6	9203	19.0	12.0	15.5	0.4	9208	chr3L	16945686	exon	Obp73a +	chr3L	16950290	intergenic	not near genes	chr3L	16954894	5` UTR	Nc73EF +	chr3L_6_16950001	chr3L_16950001	RAL-382
2264	chr3L	16945695	16945734	chr3L	16954885	16954894	roo	10	9188	10.5	10.5	10.5	0.9	9199	chr3L	16945695	exon	Obp73a +	chr3L	16950294	intergenic	not near genes	chr3L	16954894	5` UTR	Nc73EF +	chr3L_10_16950001	chr3L_16950001	RAL-382
2265	chr3L	16945737	16945761	chr3L	16954880	16954887	roo	12	9187	6.0	9.0	7.5	1.4	9150	chr3L	16945737	exon	Obp73a +	chr3L	16950312	intergenic	not near genes	chr3L	16954887	5` UTR	Nc73EF +	chr3L_12_16950001	chr3L_16950001	RAL-382
2268	chr3L	17034889	17034954	chr3L	17035122	17035192	G2	16	235	6.0	9.5	7.8	1.8	303	chr3L	17034889	intergenic	not near genes	chr3L	17035040	intergenic	not near genes	chr3L	17035192	intergenic	beg +	chr3L_16_17035001	chr3L_17035001	RAL-382
2269	chr3L	17084960	17085029	chr3L	17094159	17094228	roo	33	9199	13.5	14.0	13.8	2.2	9268	chr3L	17084960	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094228	intron	Rbp6 -	chr3L_33_17085001	chr3L_17085001	RAL-382
2280	chr3L	17516933	17517002	chr3L	17524541	17524610	412	26	7605	13.0	7.5	10.2	2.3	7677	chr3L	17516933	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524610	3` UTR	CG7564 +	chr3L_26_17520001	chr3L_17520001	RAL-382
2288	chr3L	17799765	17799834	chr3L	17801602	17801671	S-element	38	1836	13.0	11.5	12.2	2.9	1906	chr3L	17799765	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801671	intron	NUCB1 -	chr3L_38_17800001	chr3L_17800001	RAL-382
2292	chr3L	17918333	17918368	chr3L	17921186	17921221	opus	8	2852	7.0	10.0	8.5	0.8	2888	chr3L	17918333	intergenic	not near genes	chr3L	17919777	intergenic	not near genes	chr3L	17921221	intergenic	not near genes	chr3L_8_17915001	chr3L_17915001	RAL-382
2293	chr3L	17918371	17918396	chr3L	17921177	17921249	opus	5	2844	3.5	7.5	5.5	0.8	2878	chr3L	17918371	intergenic	not near genes	chr3L	17919810	intergenic	not near genes	chr3L	17921249	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	RAL-382
2303	chr3L	18047661	18047734	chr3L	18056768	18056841	roo	37	9106	9.5	9.0	9.2	3.6	9180	chr3L	18047661	intron	Eip75B -	chr3L	18052251	intron	Eip75B -	chr3L	18056841	intron	Eip75B -	chr3L_37_18050001	chr3L_18050001	RAL-382
2311	chr3L	18189544	18189558	chr3L	18190221	18190235	S-element	7	677	14.5	11.5	13.0	0.5	691	chr3L	18189544	intergenic	not near genes	chr3L	18189890	intergenic	not near genes	chr3L	18190235	intergenic	not near genes	chr3L_7_18185001	chr3L_18185001	RAL-382
2312	chr3L	18189563	18189584	chr3L	18190215	18190261	S-element	10	672	14.5	10.5	12.5	0.7	698	chr3L	18189563	intergenic	not near genes	chr3L	18189912	intergenic	not near genes	chr3L	18190261	intergenic	not near genes	chr3L_10_18185001	chr3L_18185001	RAL-382
2332	chr3L	18506092	18506156	chr3L	18509605	18509669	F-element	31	3512	9.5	13.0	11.2	2.5	3577	chr3L	18506092	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509669	intergenic	not near genes	chr3L_31_18505001	chr3L_18505001	RAL-382
2333	chr3L	18514856	18514929	chr3L	18520100	18520123	BS	23	5241	7.5	11.5	9.5	2.2	5267	chr3L	18514856	intergenic	not near genes	chr3L	18517490	intergenic	not near genes	chr3L	18520123	intergenic	not near genes	chr3L_23_18515001	chr3L_18515001	RAL-382
2337	chr3L	18528585	18528652	chr3L	18537796	18537863	roo	44	9210	12.0	3.0	7.5	5.2	9278	chr3L	18528585	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537863	intergenic	not near genes	chr3L_44_18530001	chr3L_18530001	RAL-382
2342	chr3L	18593905	18593981	chr3L	18595935	18596014	Doc	31	2029	9.5	5.5	7.5	3.6	2109	chr3L	18593905	intergenic	term -	chr3L	18594960	intergenic	not near genes	chr3L	18596014	intergenic	CR45389 +	chr3L_31_18590001	chr3L_18590001	RAL-382
2349	chr3L	18710745	18710782	chr3L	18718745	18718782	Stalker2	23	8000	13.5	6.0	9.8	2.1	8037	chr3L	18710745	intergenic	not near genes	chr3L	18714764	intergenic	not near genes	chr3L	18718782	intergenic	not near genes	chr3L_23_18710001	chr3L_18710001	RAL-382
2354	chr3L	18772366	18772431	chr3L	18781097	18781147	roo	24	8730	6.0	10.0	8.0	2.7	8781	chr3L	18772366	intron	ftz-f1 -	chr3L	18776756	intron	ftz-f1 -	chr3L	18781147	intron	ftz-f1 -	chr3L_24_18775001	chr3L_18775001	RAL-382
2358	chr3L	18833802	18833814	chr3L	18834945	18834957	1360	9	1143	13.0	21.5	17.2	0.5	1155	chr3L	18833802	intron	Indy -	chr3L	18834380	intron	Indy -	chr3L	18834957	intron	Indy -	chr3L_9_18830001	chr3L_18830001	RAL-382
2364	chr3L	19008800	19008837	chr3L	19009187	19009224	jockey	14	386	18.0	12.5	15.2	0.9	424	chr3L	19008800	intron	nkd -	chr3L	19009012	intron	nkd -	chr3L	19009224	intron	nkd -	chr3L_14_19005001	chr3L_19005001	RAL-382
2365	chr3L	19008839	19008869	chr3L	19009176	19009246	jockey	12	366	9.5	7.5	8.5	1.3	407	chr3L	19008839	intron	nkd -	chr3L	19009042	intron	nkd -	chr3L	19009246	intron	nkd -	chr3L_12_19005001	chr3L_19005001	RAL-382
2371	chr3L	19115601	19115606	chr3L	19115829	19115834	BS	4	228	21.5	9.5	15.5	0.2	233	chr3L	19115601	intron	CG14082 -	chr3L	19115718	intron	CG14082 -	chr3L	19115834	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-382
2372	chr3L	19115608	19115665	chr3L	19115826	19115893	BS	19	224	9.5	8.0	8.8	1.9	285	chr3L	19115608	intron	CG14082 -	chr3L	19115750	intron	CG14082 -	chr3L	19115893	intron	CG14082 -	chr3L_19_19115001	chr3L_19115001	RAL-382
2373	chr3L	19116999	19117070	chr3L	19124491	19124563	mdg1	25	7493	8.0	7.0	7.5	2.9	7564	chr3L	19116999	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124563	intron	CG14082 -	chr3L_25_19120001	chr3L_19120001	RAL-382
2376	chr3L	19208012	19208082	chr3L	19209436	19209504	Doc	26	1419	5.5	12.0	8.8	2.7	1492	chr3L	19208012	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209504	intron	fz2 -	chr3L_26_19205001	chr3L_19205001	RAL-382
2389	chr3L	19398891	19398932	chr3L	19403656	19403699	F-element	19	4766	4.0	4.0	4.0	3.8	4808	chr3L	19398891	intron	CG32206 -	chr3L	19401295	intron	CG32206 -	chr3L	19403699	intron	CG32206 -	chr3L_19_19400001	chr3L_19400001	RAL-382
2400	chr3L	19820251	19820319	chr3L	19827850	19827918	412	40	7598	6.5	8.0	7.2	4.9	7667	chr3L	19820251	intron	Deaf1 +	chr3L	19824084	intron	Deaf1 +	chr3L	19827918	intron	Deaf1 +	chr3L_40_19820001	chr3L_19820001	RAL-382
2401	chr3L	19848463	19848531	chr3L	19857703	19857705	roo	28	9232	14.0	8.5	11.2	2.3	9242	chr3L	19848463	intron	Papss +	chr3L	19853084	intron	Papss +	chr3L	19857705	intron	Papss +	chr3L_28_19850001	chr3L_19850001	RAL-382
2402	chr3L	19861779	19861819	chr3L	19863617	19863656	S-element	12	1838	13.0	5.0	9.0	1.2	1877	chr3L	19861779	5` UTR	CR45433 +	chr3L	19862718	intergenic	not near genes	chr3L	19863656	intergenic	not near genes	chr3L_12_19860001	chr3L_19860001	RAL-382
2403	chr3L	19861826	19861845	chr3L	19863612	19863683	S-element	7	1826	8.0	4.0	6.0	1.0	1857	chr3L	19861826	5` UTR	CR45433 +	chr3L	19862754	intergenic	not near genes	chr3L	19863683	intergenic	not near genes	chr3L_7_19860001	chr3L_19860001	RAL-382
2413	chr3L	20113616	20113676	chr3L	20122923	20122983	roo	25	9307	12.0	9.0	10.5	2.2	9367	chr3L	20113616	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122983	intergenic	not near genes	chr3L_25_20115001	chr3L_20115001	RAL-382
2418	chr3L	20212564	20212586	chr3L	20218191	20218213	mdg3	13	5627	20.5	16.0	18.2	0.7	5649	chr3L	20212564	intergenic	CG7017 -	chr3L	20215388	intergenic	not near genes	chr3L	20218213	intergenic	CG6933 -	chr3L_13_20215001	chr3L_20215001	RAL-382
2419	chr3L	20257305	20257359	chr3L	20258476	20258530	pogo	15	1169	9.5	8.5	9.0	1.5	1225	chr3L	20257305	intron	rdgC +	chr3L	20257918	intron	rdgC +	chr3L	20258530	intron	rdgC +	chr3L_15_20255001	chr3L_20255001	RAL-382
2428	chr3L	20476713	20476777	chr3L	20484362	20484399	springer	26	7647	10.5	9.5	10.0	2.4	7686	chr3L	20476713	3` UTR	isoQC +	chr3L	20480556	intergenic	not near genes	chr3L	20484399	3` UTR	ZnT77C -	chr3L_26_20480001	chr3L_20480001	RAL-382
2429	chr3L	20487625	20487674	chr3L	20488126	20488175	INE-1	11	498	8.5	6.5	7.5	1.3	550	chr3L	20487625	intron	ZnT77C -	chr3L	20487900	intron	ZnT77C -	chr3L	20488175	exon	ZnT77C -	chr3L_11_20485001	chr3L_20485001	RAL-382
2436	chr3L	20590019	20590067	chr3L	20590608	20590638	412	13	585	10.5	8.5	9.5	1.2	619	chr3L	20590019	intergenic	not near genes	chr3L	20590328	intergenic	not near genes	chr3L	20590638	intergenic	not near genes	chr3L_13_20590001	chr3L_20590001	RAL-382
2437	chr3L	20590069	20590094	chr3L	20590604	20590675	412	14	566	6.0	8.0	7.0	1.8	606	chr3L	20590069	intergenic	not near genes	chr3L	20590372	intergenic	not near genes	chr3L	20590675	intergenic	not near genes	chr3L_14_20590001	chr3L_20590001	RAL-382
2448	chr3L	20821248	20821306	chr3L	20824767	20824772	NOF	19	3516	5.5	11.5	8.5	2.0	3524	chr3L	20821248	intron	Pka-R1 +	chr3L	20823010	intron	Pka-R1 +	chr3L	20824772	intron	Pka-R1 +	chr3L_19_20820001	chr3L_20820001	RAL-382
2459	chr3L	21014888	21014948	chr3L	21023408	21023416	Tirant	16	8511	5.0	9.0	7.0	2.0	8528	chr3L	21014888	intron	skd -	chr3L	21019152	intron	skd -	chr3L	21023416	intron	skd -	chr3L_16_21015001	chr3L_21015001	RAL-382
2465	chr3L	21151822	21151882	chr3L	21156956	21157016	flea	24	5132	7.0	9.0	8.0	2.7	5194	chr3L	21151822	intron	Ac78C -	chr3L	21154419	intron	Ac78C -	chr3L	21157016	intron	Ac78C -	chr3L_24_21150001	chr3L_21150001	RAL-382
2470	chr3L	21243727	21243751	chr3L	21251310	21251315	412	6	7579	8.5	9.5	9.0	0.6	7588	chr3L	21243727	intron	Eip78C +	chr3L	21247521	intron	Eip78C +	chr3L	21251315	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	RAL-382
2473	chr3L	21306106	21306164	chr3L	21315315	21315373	roo	20	9207	9.0	12.5	10.8	1.7	9267	chr3L	21306106	3` UTR	CG7632 +	chr3L	21310740	intron	Pc -	chr3L	21315373	3` UTR	Pc -	chr3L_20_21310001	chr3L_21310001	RAL-382
2475	chr3L	21372679	21372699	chr3L	21379237	21379257	McClintock	12	6558	20.5	10.5	15.5	0.7	6578	chr3L	21372679	intergenic	not near genes	chr3L	21375968	intergenic	not near genes	chr3L	21379257	intergenic	not near genes	chr3L_12_21375001	chr3L_21375001	RAL-382
2476	chr3L	21372704	21372749	chr3L	21379227	21379306	McClintock	9	6553	8.5	7.5	8.0	1.0	6602	chr3L	21372704	intergenic	not near genes	chr3L	21376005	intergenic	not near genes	chr3L	21379306	intergenic	not near genes	chr3L_9_21375001	chr3L_21375001	RAL-382
2479	chr3L	21498833	21498854	chr3L	21500483	21500532	1360	13	1682	11.5	11.0	11.2	1.1	1699	chr3L	21498833	intron	Glg1 -	chr3L	21499682	intron	Glg1 -	chr3L	21500532	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	RAL-382
2480	chr3L	21749282	21749317	chr3L	21754481	21754515	Doc	6	5199	12.0	6.5	9.2	0.6	5233	chr3L	21749282	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754515	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-382
2481	chr3L	21749320	21749330	chr3L	21754480	21754517	Doc	7	5189	11.0	6.5	8.8	0.7	5197	chr3L	21749320	intron	Syn1 -	chr3L	21751918	intron	Syn1 -	chr3L	21754517	intron	Syn1 -	chr3L_7_21750001	chr3L_21750001	RAL-382
2492	chr3L	21952402	21952481	chr3L	21953195	21953243	transib1	40	785	10.0	7.5	8.8	4.1	841	chr3L	21952402	intergenic	not near genes	chr3L	21952822	intergenic	not near genes	chr3L	21953243	intergenic	not near genes	chr3L_40_21950001	chr3L_21950001	RAL-382
2498	chr3L	22099635	22099697	chr3L	22105871	22105933	3S18	25	6236	9.0	12.5	10.8	2.1	6298	chr3L	22099635	intergenic	not near genes	chr3L	22102784	intergenic	not near genes	chr3L	22105933	intergenic	not near genes	chr3L_25_22100001	chr3L_22100001	RAL-382
2507	chr3L	22555722	22555794	chr3L	22563242	22563286	blood	17	7517	8.0	5.0	6.5	2.3	7564	chr3L	22555722	intergenic	not near genes	chr3L	22559504	intergenic	not near genes	chr3L	22563286	intergenic	not near genes	chr3L_17_22555001	chr3L_22555001	RAL-382
2508	chr3L	22577579	22577641	chr3L	22582417	22582479	Doc	20	4836	6.0	4.0	5.0	3.3	4900	chr3L	22577579	intergenic	not near genes	chr3L	22580029	intergenic	not near genes	chr3L	22582479	3` UTR	CG14459 -	chr3L_20_22580001	chr3L_22580001	RAL-382
2510	chr3L	22617144	22617215	chr3L	22624646	22624717	blood	30	7501	5.5	8.5	7.0	3.8	7573	chr3L	22617144	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624717	intron	CG14459 -	chr3L_30_22620001	chr3L_22620001	RAL-382
2516	chr3L	22865941	22866002	chr3L	22867124	22867185	Doc	34	1183	11.5	11.0	11.2	2.8	1244	chr3L	22865941	exon	CG33170 +	chr3L	22866563	intron	CG33170 +	chr3L	22867185	intron	CG33170 +	chr3L_34_22865001	chr3L_22865001	RAL-382
2524	chr3L	22982428	22982479	chr3L	22982876	22982927	INE-1	26	447	5.5	13.5	9.5	2.5	499	chr3L	22982428	intergenic	not near genes	chr3L	22982678	intergenic	not near genes	chr3L	22982927	intergenic	not near genes	chr3L_26_22980001	chr3L_22980001	RAL-382
2525	chr3L	22989823	22989879	chr3L	22996847	22996903	297	25	7022	8.5	13.5	11.0	2.1	7080	chr3L	22989823	intergenic	not near genes	chr3L	22993363	intergenic	not near genes	chr3L	22996903	intergenic	not near genes	chr3L_25_22990001	chr3L_22990001	RAL-382
2527	chr3L	23042184	23042235	chr3L	23048987	23049038	gypsy6	21	6800	10.5	11.5	11.0	1.8	6854	chr3L	23042184	intergenic	not near genes	chr3L	23045611	intergenic	not near genes	chr3L	23049038	intergenic	not near genes	chr3L_21_23045001	chr3L_23045001	RAL-382
2528	chr3L	23042239	23042249	chr3L	23048986	23049052	gypsy6	8	6779	7.0	11.5	9.2	0.8	6813	chr3L	23042239	intergenic	not near genes	chr3L	23045646	intergenic	not near genes	chr3L	23049052	intergenic	not near genes	chr3L_8_23045001	chr3L_23045001	RAL-382
2530	chr3L	23165869	23165906	chr3L	23173362	23173397	Quasimodo	12	7492	16.0	9.0	12.5	0.9	7528	chr3L	23165869	intergenic	not near genes	chr3L	23169633	intergenic	not near genes	chr3L	23173397	intergenic	not near genes	chr3L_12_23165001	chr3L_23165001	RAL-382
2538	chr3L	23941238	23941240	chr3L	26882296	26882298	1360	4	2941058	29.0	11.0	20.0	0.2	2941060	chr3L	23941238	intron	CG40470 -	chr3L	25411768	intergenic	not near genes	chr3L	26882298	intergenic	not near genes	chr3L_4_25410001	chr3L_25410001	RAL-382
2539	chr3L	24012371	24012431	chr3L	24020761	24020807	roo	21	8389	11.5	10.0	10.8	1.8	8436	chr3L	24012371	intergenic	not near genes	chr3L	24016589	intergenic	not near genes	chr3L	24020807	intergenic	not near genes	chr3L_21_24015001	chr3L_24015001	RAL-382
2540	chr3L	24168760	24168820	chr3L	24176122	24176168	ZAM	16	7356	11.5	7.0	9.2	1.6	7408	chr3L	24168760	intron	Snap25 +	chr3L	24172464	intron	Snap25 +	chr3L	24176168	intron	Snap25 +	chr3L_16_24170001	chr3L_24170001	RAL-382
2542	chr3L	24791855	24791867	chr3L	24796684	24796696	Doc	6	4829	20.0	6.0	13.0	0.4	4841	chr3L	24791855	intergenic	not near genes	chr3L	24794276	intergenic	not near genes	chr3L	24796696	intergenic	not near genes	chr3L_6_24790001	chr3L_24790001	RAL-382
2543	chr3L	24791870	24791886	chr3L	24796678	24796715	Doc	5	4825	15.5	5.0	10.2	0.4	4845	chr3L	24791870	intergenic	not near genes	chr3L	24794292	intergenic	not near genes	chr3L	24796715	intergenic	not near genes	chr3L_5_24790001	chr3L_24790001	RAL-382
2553	chr3L	26704490	26704526	chr3L	26709845	26709881	Transpac	5	5350	6.5	7.5	7.0	0.6	5391	chr3L	26704490	intergenic	not near genes	chr3L	26707186	intergenic	not near genes	chr3L	26709881	intergenic	not near genes	chr3L_5_26705001	chr3L_26705001	RAL-382
2554	chr3L	23941237	23941241	chr3L	26882296	26882300	1360	8	2941059	29.0	11.0	20.0	0.4	2941063	chr3L	23941237	intron	CG40470 -	chr3L	25411768	intergenic	not near genes	chr3L	26882300	intergenic	not near genes	chr3L_8_25410001	chr3L_25410001	RAL-382
2560	chr3R	4105001	4105057	chr3R	4110255	4110311	copia	12	5254	10.5	6.0	8.2	1.3	5310	chr3R	4105001	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110311	intergenic	not near genes	chr3R_12_4105001	chr3R_4105001	RAL-382
2561	chr3R	4206034	4206097	chr3R	4211659	4211722	mdg3	33	5624	13.0	7.0	10.0	3.0	5688	chr3R	4206034	intron	CG14636 -	chr3R	4208878	intron	CG14636 -	chr3R	4211722	intron	CG14636 -	chr3R_33_4205001	chr3R_4205001	RAL-382
2562	chr3R	4366714	4366729	chr3R	4375147	4375162	roo	11	8432	26.5	14.5	20.5	0.5	8448	chr3R	4366714	3` UTR	CG1090 +	chr3R	4370938	intergenic	not near genes	chr3R	4375162	5` UTR	CR44922 +	chr3R_11_4370001	chr3R_4370001	RAL-382
2563	chr3R	4366731	4366790	chr3R	4375138	4375196	roo	21	8430	8.0	9.5	8.8	2.1	8465	chr3R	4366731	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375196	5` UTR	CR44922 +	chr3R_21_4370001	chr3R_4370001	RAL-382
2565	chr3R	4408380	4408429	chr3R	4412724	4412783	Juan	24	4350	12.5	9.5	11.0	2.0	4403	chr3R	4408380	intron	CG32944 -	chr3R	4410582	intron	CG32944 -	chr3R	4412783	intron	CG32944 -	chr3R_24_4410001	chr3R_4410001	RAL-382
2568	chr3R	4609505	4609514	chr3R	4610718	4610728	1360	4	1214	20.5	9.0	14.8	0.3	1223	chr3R	4609505	intergenic	not near genes	chr3R	4610116	intergenic	not near genes	chr3R	4610728	intergenic	not near genes	chr3R_4_4610001	chr3R_4610001	RAL-382
2569	chr3R	4609522	4609571	chr3R	4610713	4610785	1360	18	1213	9.5	7.0	8.2	2.0	1263	chr3R	4609522	intergenic	not near genes	chr3R	4610154	intergenic	not near genes	chr3R	4610785	intergenic	not near genes	chr3R_18_4610001	chr3R_4610001	RAL-382
2570	chr3R	4636560	4636627	chr3R	4637020	4637097	INE-1	35	469	11.0	7.0	9.0	3.5	537	chr3R	4636560	intergenic	not near genes	chr3R	4636828	intergenic	not near genes	chr3R	4637097	intergenic	not near genes	chr3R_35_4635001	chr3R_4635001	RAL-382
2572	chr3R	4683136	4683187	chr3R	4684945	4684995	S-element	13	1807	14.0	6.5	10.2	1.2	1859	chr3R	4683136	intron	CG43427 +	chr3R	4684066	intron	CG43427 +	chr3R	4684995	intron	CG43427 +	chr3R_13_4680001	chr3R_4680001	RAL-382
2573	chr3R	4683188	4683201	chr3R	4684937	4685010	S-element	6	1792	12.0	4.5	8.2	0.7	1822	chr3R	4683188	intron	CG43427 +	chr3R	4684099	intron	CG43427 +	chr3R	4685010	intron	CG43427 +	chr3R_6_4680001	chr3R_4680001	RAL-382
2574	chr3R	4753196	4753261	chr3R	4757549	4757614	F-element	20	4351	11.5	9.0	10.2	1.8	4418	chr3R	4753196	intron,intron	atms +,CG44098 -	chr3R	4755405	intron,intron	atms +,CG44098 -	chr3R	4757614	intron,exon	atms +,CG44098 -	chr3R_20_4755001	chr3R_4755001	RAL-382
2578	chr3R	4887439	4887450	chr3R	4894866	4894877	rover	4	7426	17.0	8.5	12.8	0.3	7438	chr3R	4887439	intergenic	not near genes	chr3R	4891158	intergenic	not near genes	chr3R	4894877	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-382
2579	chr3R	4887452	4887501	chr3R	4894864	4894928	rover	11	7424	8.5	8.0	8.2	1.2	7476	chr3R	4887452	intergenic	not near genes	chr3R	4891190	intergenic	not near genes	chr3R	4894928	intergenic	not near genes	chr3R_11_4890001	chr3R_4890001	RAL-382
2584	chr3R	5045798	5045871	chr3R	5052950	5053023	HMS-Beagle	37	7152	7.5	11.5	9.5	3.5	7225	chr3R	5045798	3` UTR	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5053023	intergenic	CR45588 -	chr3R_37_5045001	chr3R_5045001	RAL-382
2585	chr3R	5067949	5067995	chr3R	5073516	5073562	mdg3	23	5566	10.5	14.5	12.5	1.7	5613	chr3R	5067949	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073562	intergenic	not near genes	chr3R_23_5070001	chr3R_5070001	RAL-382
2591	chr3R	5338359	5338389	chr3R	5343586	5343616	Rt1c	10	5224	18.0	14.0	16.0	0.6	5257	chr3R	5338359	intron	mtd -	chr3R	5340988	intron	mtd -	chr3R	5343616	intron	mtd -	chr3R_10_5340001	chr3R_5340001	RAL-382
2592	chr3R	5338391	5338416	chr3R	5343574	5343643	Rt1c	16	5220	12.0	10.5	11.2	1.3	5252	chr3R	5338391	intron	mtd -	chr3R	5341017	intron	mtd -	chr3R	5343643	intron	mtd -	chr3R_16_5340001	chr3R_5340001	RAL-382
2593	chr3R	5365289	5365346	chr3R	5367007	5367064	NOF	31	1718	15.0	6.5	10.8	2.6	1775	chr3R	5365289	intron	Cerk -	chr3R	5366176	intron	Cerk -	chr3R	5367064	intron	Cerk -	chr3R_31_5365001	chr3R_5365001	RAL-382
2598	chr3R	5445919	5445992	chr3R	5452428	5452502	Burdock	37	6509	8.0	11.5	9.8	3.4	6583	chr3R	5445919	intron	CG14669 +	chr3R	5449210	intron	CG14669 +	chr3R	5452502	intron	CG14669 +	chr3R_37_5445001	chr3R_5445001	RAL-382
2600	chr3R	5745974	5746033	chr3R	5746265	5746323	pogo	22	289	9.0	10.5	9.8	2.0	349	chr3R	5745974	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746323	3` UTR	Madm +	chr3R_22_5745001	chr3R_5745001	RAL-382
2601	chr3R	5746973	5747034	chr3R	5753214	5753275	diver	38	6241	12.0	12.0	12.0	2.9	6302	chr3R	5746973	intergenic	Madm +	chr3R	5750124	intergenic	not near genes	chr3R	5753275	intergenic	CG2091 -	chr3R_38_5750001	chr3R_5750001	RAL-382
2603	chr3R	5809069	5809142	chr3R	5809360	5809421	pogo	39	291	10.5	10.5	10.5	3.4	352	chr3R	5809069	3` UTR	CG11000 +	chr3R	5809245	3` UTR	CG11000 +	chr3R	5809421	3` UTR	CG11000 +	chr3R_39_5805001	chr3R_5805001	RAL-382
2604	chr3R	5822346	5822402	chr3R	5823563	5823619	1360	25	1216	11.0	14.5	12.8	1.8	1273	chr3R	5822346	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823619	3` UTR	CG2023 -	chr3R_25_5820001	chr3R_5820001	RAL-382
2611	chr3R	5927534	5927582	chr3R	5927808	5927851	pogo	25	285	8.5	11.0	9.8	2.3	317	chr3R	5927534	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927851	intron	CG34113 -	chr3R_25_5925001	chr3R_5925001	RAL-382
2618	chr3R	6015916	6015985	chr3R	6024447	6024474	Tirant	9	8522	9.0	3.5	6.2	1.2	8558	chr3R	6015916	intergenic	not near genes	chr3R	6020195	intergenic	not near genes	chr3R	6024474	intergenic	not near genes	chr3R_9_6020001	chr3R_6020001	RAL-382
2622	chr3R	6121135	6121177	chr3R	6121370	6121445	BS	17	256	2.5	7.5	5.0	2.8	310	chr3R	6121135	intergenic	not near genes	chr3R	6121290	intergenic	not near genes	chr3R	6121445	intergenic	not near genes	chr3R_17_6120001	chr3R_6120001	RAL-382
2623	chr3R	6158477	6158533	chr3R	6167098	6167108	Tirant	18	8619	10.0	6.0	8.0	2.0	8631	chr3R	6158477	intergenic	not near genes	chr3R	6162792	intergenic	not near genes	chr3R	6167108	intergenic	CG1077 +	chr3R_18_6160001	chr3R_6160001	RAL-382
2624	chr3R	6175129	6175201	chr3R	6182451	6182493	HMS-Beagle2	27	7320	7.5	9.0	8.2	2.9	7364	chr3R	6175129	intergenic	Osi1 +	chr3R	6178811	intron	CR45194 +	chr3R	6182493	intergenic	CR45194 +	chr3R_27_6175001	chr3R_6175001	RAL-382
2629	chr3R	6509987	6510044	chr3R	6515118	6515175	jockey	26	5130	16.0	13.5	14.8	1.6	5188	chr3R	6509987	intergenic	not near genes	chr3R	6512581	intergenic	not near genes	chr3R	6515175	intergenic	not near genes	chr3R_26_6510001	chr3R_6510001	RAL-382
2639	chr3R	6737454	6737482	chr3R	6739291	6739310	Doc	4	1833	15.0	10.5	12.8	0.3	1856	chr3R	6737454	intron	pb -	chr3R	6738382	intron	pb -	chr3R	6739310	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-382
2640	chr3R	6737490	6737520	chr3R	6739284	6739316	Doc	6	1823	7.5	7.5	7.5	0.7	1826	chr3R	6737490	intron	pb -	chr3R	6738403	intron	pb -	chr3R	6739316	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-382
2674	chr3R	7694533	7694604	chr3R	7713644	7713715	invader3	35	19109	11.0	9.5	10.2	3.1	19182	chr3R	7694533	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713715	intergenic	not near genes	chr3R_35_7700001	chr3R_7700001	RAL-382
2675	chr3R	7729424	7729498	chr3R	7737412	7737416	Stalker2	36	7982	6.5	11.0	8.8	3.7	7992	chr3R	7729424	intergenic	not near genes	chr3R	7733420	intergenic	not near genes	chr3R	7737416	intergenic	not near genes	chr3R_36_7730001	chr3R_7730001	RAL-382
2678	chr3R	7876675	7876691	chr3R	7876813	7876829	INE-1	6	137	8.5	8.5	8.5	0.6	154	chr3R	7876675	intron	CG17816 -	chr3R	7876752	intron	CG17816 -	chr3R	7876829	intron	CG17816 -	chr3R_6_7875001	chr3R_7875001	RAL-382
2682	chr3R	7973279	7973327	chr3R	7974391	7974439	1360	18	1112	11.5	12.0	11.8	1.4	1160	chr3R	7973279	intergenic	not near genes	chr3R	7973859	intergenic	not near genes	chr3R	7974439	3` UTR	CD98hc -	chr3R_18_7970001	chr3R_7970001	RAL-382
2687	chr3R	8090518	8090561	chr3R	8094045	8094088	297	18	3525	8.5	15.5	12.0	1.4	3570	chr3R	8090518	intergenic	CR44330 +	chr3R	8092303	intergenic	not near genes	chr3R	8094088	intergenic	CG7900 +	chr3R_18_8090001	chr3R_8090001	RAL-382
2688	chr3R	8094367	8094427	chr3R	8099722	8099782	Transpac	19	5354	7.5	11.5	9.5	1.8	5415	chr3R	8094367	intron	CG7900 +	chr3R	8097074	intron	CG7900 +	chr3R	8099782	intron	CG7900 +	chr3R_19_8095001	chr3R_8095001	RAL-382
2689	chr3R	8101714	8101784	chr3R	8104848	8104896	G2	23	3132	5.5	6.0	5.8	3.4	3182	chr3R	8101714	exon	CG7900 +	chr3R	8103305	intron	CG7900 +	chr3R	8104896	3` UTR	CG7900 +	chr3R_23_8100001	chr3R_8100001	RAL-382
2692	chr3R	8207504	8207583	chr3R	8208400	8208468	F-element	31	890	6.5	6.5	6.5	4.1	964	chr3R	8207504	intergenic	not near genes	chr3R	8207986	intergenic	not near genes	chr3R	8208468	intergenic	not near genes	chr3R_31_8205001	chr3R_8205001	RAL-382
2700	chr3R	8402966	8403033	chr3R	8412182	8412248	roo	11	9215	4.0	5.5	4.8	1.9	9282	chr3R	8402966	intron	CG45263 -	chr3R	8407607	intron	CG45263 -	chr3R	8412248	intron	CG45263 -	chr3R_11_8405001	chr3R_8405001	RAL-382
2706	chr3R	8570454	8570463	chr3R	8575140	8575149	HMS-Beagle	4	4686	9.5	19.5	14.5	0.3	4695	chr3R	8570454	intergenic	not near genes	chr3R	8572802	intergenic	not near genes	chr3R	8575149	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-382
2707	chr3R	8570464	8570499	chr3R	8575118	8575181	HMS-Beagle	10	4675	5.0	12.5	8.8	1.0	4717	chr3R	8570464	intergenic	not near genes	chr3R	8572822	intergenic	not near genes	chr3R	8575181	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	RAL-382
2709	chr3R	8601736	8601746	chr3R	8610939	8610942	roo	7	9202	22.5	12.0	17.2	0.4	9206	chr3R	8601736	intron	5-HT2B +	chr3R	8606339	intron	5-HT2B +	chr3R	8610942	intron	5-HT2B +	chr3R_7_8605001	chr3R_8605001	RAL-382
2710	chr3R	8601748	8601788	chr3R	8610930	8610991	roo	20	9197	8.5	10.0	9.2	2.0	9243	chr3R	8601748	intron	5-HT2B +	chr3R	8606370	intron	5-HT2B +	chr3R	8610991	intron	5-HT2B +	chr3R_20_8605001	chr3R_8605001	RAL-382
2713	chr3R	8707318	8707379	chr3R	8709798	8709849	jockey	19	2485	10.5	6.5	8.5	2.0	2531	chr3R	8707318	intergenic	not near genes	chr3R	8708584	intergenic	not near genes	chr3R	8709849	intergenic	not near genes	chr3R_19_8705001	chr3R_8705001	RAL-382
2716	chr3R	8868761	8868782	chr3R	8872655	8872676	297	4	3893	18.0	13.0	15.5	0.2	3915	chr3R	8868761	intron	pyd -	chr3R	8870718	intron	pyd -	chr3R	8872676	intron	pyd -	chr3R_4_8870001	chr3R_8870001	RAL-382
2718	chr3R	8894834	8894887	chr3R	8896040	8896093	1360	28	1206	10.0	14.0	12.0	2.2	1259	chr3R	8894834	intron	pyd -	chr3R	8895464	intron	pyd -	chr3R	8896093	intron	pyd -	chr3R_28_8895001	chr3R_8895001	RAL-382
2719	chr3R	8898183	8898213	chr3R	8913813	8913843	297	7	15628	11.0	3.0	7.0	0.9	15660	chr3R	8898183	intron	pyd -	chr3R	8906013	intron	pyd -	chr3R	8913843	intron	pyd -	chr3R_7_8905001	chr3R_8905001	RAL-382
2728	chr3R	9278733	9278809	chr3R	9284041	9284103	Rt1a	22	5306	7.5	6.0	6.8	2.8	5370	chr3R	9278733	intergenic	not near genes	chr3R	9281418	intergenic	not near genes	chr3R	9284103	intergenic	not near genes	chr3R_22_9280001	chr3R_9280001	RAL-382
2730	chr3R	9319533	9319595	chr3R	9320018	9320080	jockey	25	485	6.5	12.0	9.2	2.5	547	chr3R	9319533	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320080	intron	CG8861 -	chr3R_25_9315001	chr3R_9315001	RAL-382
2731	chr3R	9361809	9361835	chr3R	9362100	9362126	pogo	13	291	14.5	20.5	17.5	0.7	317	chr3R	9361809	3` UTR	CG45050 +	chr3R	9361968	3` UTR	CG45050 +	chr3R	9362126	3` UTR	CG45050 +	chr3R_13_9360001	chr3R_9360001	RAL-382
2754	chr3R	10196907	10196928	chr3R	10202944	10202965	297	11	6035	16.5	8.0	12.2	0.8	6058	chr3R	10196907	exon	Syn +	chr3R	10199936	intron	Syn +	chr3R	10202965	intron	Syn +	chr3R_11_10195001	chr3R_10195001	RAL-382
2755	chr3R	10231747	10231807	chr3R	10237364	10237434	mdg3	30	5626	5.5	11.5	8.5	3.2	5687	chr3R	10231747	intron	CG42795 +	chr3R	10234590	intron	CG42795 +	chr3R	10237434	intron	CG42795 +	chr3R_30_10230001	chr3R_10230001	RAL-382
2756	chr3R	10255342	10255382	chr3R	10260832	10260872	I-element	25	5489	15.5	14.0	14.8	1.6	5530	chr3R	10255342	intergenic	Sirt6 -,CG3999 +	chr3R	10258107	intron	Sirt6 -	chr3R	10260872	exon	Sirt6 -	chr3R_25_10255001	chr3R_10255001	RAL-382
2767	chr3R	10804137	10804193	chr3R	10811717	10811775	17.6	25	7582	7.0	11.5	9.2	2.5	7638	chr3R	10804137	intergenic	CG14692 -	chr3R	10807956	intergenic	not near genes	chr3R	10811775	3` UTR	CG14693 -	chr3R_25_10805001	chr3R_10805001	RAL-382
2774	chr3R	10957852	10957884	chr3R	10963269	10963282	Rt1c	10	5413	7.0	7.5	7.2	1.2	5430	chr3R	10957852	intergenic	not near genes	chr3R	10960567	intergenic	not near genes	chr3R	10963282	intergenic	not near genes	chr3R_10_10960001	chr3R_10960001	RAL-382
2778	chr3R	11065596	11065615	chr3R	11071245	11071319	297	6	5695	8.0	5.5	6.8	0.8	5723	chr3R	11065596	intergenic	not near genes	chr3R	11068458	intergenic	not near genes	chr3R	11071319	intergenic	not near genes	chr3R_6_11065001	chr3R_11065001	RAL-382
2782	chr3R	11247198	11247226	chr3R	11247329	11247357	INE-1	10	131	18.5	6.0	12.2	0.8	159	chr3R	11247198	intergenic	CG5214 +,CR43283 -	chr3R	11247278	intergenic	CR43283 -,CG5214 +	chr3R	11247357	intergenic	CR43283 -,CG5214 +	chr3R_10_11245001	chr3R_11245001	RAL-382
2792	chr3R	11379198	11379227	chr3R	11388403	11388432	roo	6	9204	7.5	8.5	8.0	0.7	9234	chr3R	11379198	intron	pros +	chr3R	11383815	intron	pros +	chr3R	11388432	intron	pros +	chr3R_6_11380001	chr3R_11380001	RAL-382
2805	chr3R	11841026	11841090	chr3R	11846261	11846316	BS	15	5235	4.0	12.0	8.0	1.7	5290	chr3R	11841026	intron	CG6959 -	chr3R	11843671	intron	CG6959 -	chr3R	11846316	intron	CG6959 -	chr3R_15_11840001	chr3R_11840001	RAL-382
2807	chr3R	11957807	11957880	chr3R	11958140	11958213	S-element	18	331	7.0	0.5	3.8	3.8	406	chr3R	11957807	intergenic	not near genes	chr3R	11958010	intergenic	not near genes	chr3R	11958213	intergenic	not near genes	chr3R_18_11955001	chr3R_11955001	RAL-382
2808	chr3R	12022836	12022915	chr3R	12025063	12025126	pogo	39	2225	7.5	8.0	7.8	4.4	2290	chr3R	12022836	intergenic	not near genes	chr3R	12023981	intergenic	not near genes	chr3R	12025126	intergenic	not near genes	chr3R_39_12020001	chr3R_12020001	RAL-382
2826	chr3R	12864528	12864581	chr3R	12865063	12865116	roo	15	535	5.0	9.0	7.0	1.9	588	chr3R	12864528	intergenic	not near genes	chr3R	12864822	intergenic	not near genes	chr3R	12865116	intergenic	not near genes	chr3R_15_12860001	chr3R_12860001	RAL-382
2828	chr3R	12920138	12920176	chr3R	12925355	12925429	copia	17	5247	14.0	4.0	9.0	1.7	5291	chr3R	12920138	intron	beat-Vb +	chr3R	12922784	intron	beat-Vb +	chr3R	12925429	intron	beat-Vb +	chr3R_17_12920001	chr3R_12920001	RAL-382
2840	chr3R	13135788	13135838	chr3R	13138003	13138053	pogo	17	2215	13.5	4.5	9.0	1.7	2265	chr3R	13135788	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136920	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138053	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_17_13135001	chr3R_13135001	RAL-382
2842	chr3R	13142990	13143066	chr3R	13148616	13148692	mdg3	18	5624	6.0	4.0	5.0	3.0	5702	chr3R	13142990	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145841	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148692	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_18_13145001	chr3R_13145001	RAL-382
2844	chr3R	13314057	13314118	chr3R	13318894	13318955	Doc	20	4837	7.5	10.5	9.0	2.0	4898	chr3R	13314057	intergenic	not near genes	chr3R	13316506	intergenic	not near genes	chr3R	13318955	intergenic	CG45080 -	chr3R_20_13315001	chr3R_13315001	RAL-382
2850	chr3R	13517214	13517255	chr3R	13520081	13520121	jockey	15	2864	10.0	3.5	6.8	1.9	2907	chr3R	13517214	intergenic	not near genes	chr3R	13518668	intergenic	not near genes	chr3R	13520121	intergenic	not near genes	chr3R_15_13515001	chr3R_13515001	RAL-382
2870	chr3R	14021597	14021678	chr3R	14023464	14023545	S-element	30	1867	5.5	8.0	6.8	3.8	1948	chr3R	14021597	intron	rdx -	chr3R	14022571	intron	rdx -	chr3R	14023545	intron	rdx -	chr3R_30_14020001	chr3R_14020001	RAL-382
2884	chr3R	14180770	14180831	chr3R	14185585	14185646	F-element	20	4815	10.0	14.0	12.0	1.5	4876	chr3R	14180770	intron	Dop1R1 -	chr3R	14183208	intron	Dop1R1 -	chr3R	14185646	intron	Dop1R1 -	chr3R_20_14180001	chr3R_14180001	RAL-382
2885	chr3R	14194387	14194456	chr3R	14203586	14203635	roo	24	9196	9.5	13.0	11.2	2.0	9248	chr3R	14194387	intron	Dop1R1 -	chr3R	14199011	intron	Dop1R1 -	chr3R	14203635	intron	Dop1R1 -	chr3R_24_14195001	chr3R_14195001	RAL-382
2888	chr3R	14236901	14236926	chr3R	14244445	14244467	Idefix	5	7541	15.5	6.5	11.0	0.4	7566	chr3R	14236901	exon	CG43291 -	chr3R	14240684	intron	CG43291 -	chr3R	14244467	intron	CG43291 -	chr3R_5_14240001	chr3R_14240001	RAL-382
2889	chr3R	14246357	14246411	chr3R	14247898	14247902	jockey	18	1540	10.0	7.0	8.5	1.9	1545	chr3R	14246357	intergenic	not near genes	chr3R	14247130	intergenic	not near genes	chr3R	14247902	intergenic	not near genes	chr3R_18_14245001	chr3R_14245001	RAL-382
2918	chr3R	15041386	15041419	chr3R	15045203	15045237	Doc	16	3818	17.5	0.5	9.0	1.6	3851	chr3R	15041386	intergenic	not near genes	chr3R	15043312	intergenic	not near genes	chr3R	15045237	intergenic	not near genes	chr3R_16_15040001	chr3R_15040001	RAL-382
2919	chr3R	15041424	15041450	chr3R	15045242	15045268	Doc	12	3818	7.5	3.5	5.5	1.8	3844	chr3R	15041424	intergenic	not near genes	chr3R	15043346	intergenic	not near genes	chr3R	15045268	intergenic	not near genes	chr3R_12_15040001	chr3R_15040001	RAL-382
2921	chr3R	15059238	15059299	chr3R	15059499	15059558	BS	8	260	0.0	3.0	1.5	3.2	320	chr3R	15059238	intron	dpr9 -	chr3R	15059398	intron	dpr9 -	chr3R	15059558	intron	dpr9 -	chr3R_8_15055001	chr3R_15055001	RAL-382
2925	chr3R	15079763	15079839	chr3R	15080054	15080123	pogo	34	287	8.5	1.0	4.8	5.9	360	chr3R	15079763	3` UTR	CG6966 -	chr3R	15079943	3` UTR	CG6966 -	chr3R	15080123	3` UTR	CG6966 -	chr3R_34_15075001	chr3R_15075001	RAL-382
2927	chr3R	15102451	15102523	chr3R	15109758	15109828	412	31	7307	11.5	11.0	11.2	2.5	7377	chr3R	15102451	intron	CG42788 -	chr3R	15106140	intron	CG42788 -	chr3R	15109828	intron	CG42788 -	chr3R_31_15105001	chr3R_15105001	RAL-382
2930	chr3R	15132015	15132078	chr3R	15135125	15135189	Juan	25	3110	6.5	12.0	9.2	2.5	3174	chr3R	15132015	intergenic	CG42788 -	chr3R	15133602	intergenic	not near genes	chr3R	15135189	exon	CG6912 -	chr3R_25_15130001	chr3R_15130001	RAL-382
2933	chr3R	15162498	15162556	chr3R	15167316	15167374	F-element	15	4816	9.5	4.5	7.0	1.9	4876	chr3R	15162498	intron	Gyc88E +	chr3R	15164936	intron	Gyc88E +	chr3R	15167374	intron	Gyc88E +	chr3R_15_15160001	chr3R_15160001	RAL-382
2945	chr3R	15601127	15601189	chr3R	15608699	15608761	412	22	7570	6.5	8.5	7.5	2.6	7634	chr3R	15601127	intergenic	not near genes	chr3R	15604944	intergenic	not near genes	chr3R	15608761	intergenic	not near genes	chr3R_22_15600001	chr3R_15600001	RAL-382
2947	chr3R	15618712	15618762	chr3R	15626208	15626281	blood	20	7517	4.0	9.5	6.8	2.6	7569	chr3R	15618712	intergenic	not near genes	chr3R	15622496	intergenic	not near genes	chr3R	15626281	intergenic	not near genes	chr3R_20_15620001	chr3R_15620001	RAL-382
2958	chr3R	15735192	15735235	chr3R	15739962	15740005	F-element	20	4770	6.5	7.0	6.8	2.6	4813	chr3R	15735192	intergenic	not near genes	chr3R	15737598	intergenic	not near genes	chr3R	15740005	intergenic	not near genes	chr3R_20_15735001	chr3R_15735001	RAL-382
2966	chr3R	16189381	16189437	chr3R	16189833	16189890	invader4	7	453	30.5	37.0	33.8	0.2	509	chr3R	16189381	intron	sra +	chr3R	16189636	intron	sra +	chr3R	16189890	intron	sra +	chr3R_7_16185001	chr3R_16185001	RAL-382
2980	chr3R	16756292	16756354	chr3R	16762515	16762564	diver	9	6228	3.0	4.5	3.8	1.9	6272	chr3R	16756292	intron	bxd -	chr3R	16759428	intron	bxd -	chr3R	16762564	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-382
2993	chr3R	17294638	17294690	chr3R	17295105	17295168	BS	17	474	7.5	11.0	9.2	1.7	530	chr3R	17294638	intergenic	not near genes	chr3R	17294903	intergenic	not near genes	chr3R	17295168	intergenic	not near genes	chr3R_17_17290001	chr3R_17290001	RAL-382
2996	chr3R	17346650	17346715	chr3R	17348263	17348328	F-element	27	1613	8.0	12.5	10.2	2.4	1678	chr3R	17346650	intron	beat-IIa -	chr3R	17347489	intron	beat-IIa -	chr3R	17348328	intron	beat-IIa -	chr3R_27_17345001	chr3R_17345001	RAL-382
3001	chr3R	17509218	17509237	chr3R	17516809	17516823	412	6	7589	5.0	6.5	5.8	0.9	7605	chr3R	17509218	intergenic	not near genes	chr3R	17513020	intergenic	not near genes	chr3R	17516823	intergenic	not near genes	chr3R_6_17510001	chr3R_17510001	RAL-382
3002	chr3R	17509242	17509253	chr3R	17516805	17516834	412	4	7580	2.5	6.0	4.2	0.8	7592	chr3R	17509242	intergenic	not near genes	chr3R	17513038	intergenic	not near genes	chr3R	17516834	intergenic	not near genes	chr3R_4_17510001	chr3R_17510001	RAL-382
3008	chr3R	17591246	17591288	chr3R	17591732	17591774	F-element	9	483	16.0	12.5	14.2	0.6	528	chr3R	17591246	intergenic	not near genes	chr3R	17591510	intergenic	not near genes	chr3R	17591774	intergenic	not near genes	chr3R_9_17590001	chr3R_17590001	RAL-382
3009	chr3R	17591289	17591314	chr3R	17591729	17591800	F-element	10	470	10.5	12.0	11.2	0.8	511	chr3R	17591289	intergenic	not near genes	chr3R	17591544	intergenic	not near genes	chr3R	17591800	intergenic	not near genes	chr3R_10_17590001	chr3R_17590001	RAL-382
3010	chr3R	17638275	17638338	chr3R	17638811	17638874	roo	37	536	15.0	14.5	14.8	2.3	599	chr3R	17638275	intron	CG43175 +	chr3R	17638574	intron	CG43175 +	chr3R	17638874	intron,intron	CG43175 +,CR45222 +	chr3R_37_17635001	chr3R_17635001	RAL-382
3023	chr3R	17925810	17925877	chr3R	17927327	17927354	hobo	9	1507	8.0	9.5	8.8	0.9	1544	chr3R	17925810	intron	cpo +	chr3R	17926582	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_9_17925001	chr3R_17925001	RAL-382
3027	chr3R	18032729	18032808	chr3R	18040452	18040531	opus	19	7723	2.5	7.5	5.0	3.2	7802	chr3R	18032729	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040531	intergenic	not near genes	chr3R_19_18035001	chr3R_18035001	RAL-382
3030	chr3R	18061570	18061587	chr3R	18063194	18063211	F-element	5	1623	0.0	5.0	2.5	1.4	1641	chr3R	18061570	intergenic	not near genes	chr3R	18062390	intergenic	not near genes	chr3R	18063211	intergenic	not near genes	chr3R_5_18060001	chr3R_18060001	RAL-382
3056	chr3R	18606461	18606473	chr3R	18610743	18610755	F-element	6	4282	20.0	14.0	17.0	0.3	4294	chr3R	18606461	intron,intron	qin +,CG14304 -	chr3R	18608608	intron,intron	qin +,CG14304 -	chr3R	18610755	intron,intron	qin +,CG14304 -	chr3R_6_18605001	chr3R_18605001	RAL-382
3057	chr3R	18606475	18606522	chr3R	18610741	18610804	F-element	23	4279	11.0	13.0	12.0	1.8	4329	chr3R	18606475	intron,intron	qin +,CG14304 -	chr3R	18608640	intron,intron	qin +,CG14304 -	chr3R	18610804	intron,intron	qin +,CG14304 -	chr3R_23_18605001	chr3R_18605001	RAL-382
3079	chr3R	19136406	19136474	chr3R	19139742	19139810	Bari1	65	3341	130.0	84.5	107.2	0.6	3404	chr3R	19136406	exon	Cyp12a4 +	chr3R	19138108	intergenic	not near genes	chr3R	19139810	3` UTR	Ppcs -	chr3R_65_19135001	chr3R_19135001	RAL-382
3081	chr3R	19193003	19193006	chr3R	19197301	19197360	F-element	5	4327	0.0	8.0	4.0	1.0	4357	chr3R	19193003	intron	CG31475 +	chr3R	19195182	intron	CG31475 +	chr3R	19197360	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-382
3094	chr3R	19744201	19744208	chr3R	19749495	19749502	Rt1a	5	5294	16.5	12.5	14.5	0.3	5301	chr3R	19744201	intron,intron	GluClalpha +,CR43488 -	chr3R	19746852	intron	GluClalpha +	chr3R	19749502	intron	GluClalpha +	chr3R_5_19745001	chr3R_19745001	RAL-382
3110	chr3R	20109491	20109563	chr3R	20114745	20114809	copia	20	5252	5.5	9.5	7.5	2.4	5318	chr3R	20109491	intergenic	not near genes	chr3R	20112150	intergenic	not near genes	chr3R	20114809	intergenic	CG10887 +	chr3R_20_20110001	chr3R_20110001	RAL-382
3112	chr3R	20156653	20156714	chr3R	20165873	20165933	roo	32	9219	9.0	11.5	10.2	2.9	9280	chr3R	20156653	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165933	intergenic	not near genes	chr3R_32_20160001	chr3R_20160001	RAL-382
3120	chr3R	20245236	20245295	chr3R	20248896	20248955	F-element	28	3659	13.5	0.0	6.8	3.6	3719	chr3R	20245236	3` UTR	Nlg4 +	chr3R	20247096	intergenic	not near genes	chr3R	20248955	intergenic	not near genes	chr3R_28_20245001	chr3R_20245001	RAL-382
3122	chr3R	20266468	20266537	chr3R	20272989	20273058	Burdock	14	6521	9.5	11.5	10.5	1.2	6590	chr3R	20266468	intron	cic +	chr3R	20269763	intron	cic +	chr3R	20273058	intron	cic +	chr3R_14_20265001	chr3R_20265001	RAL-382
3124	chr3R	20330959	20331023	chr3R	20331495	20331559	roo	28	536	8.5	11.0	9.8	2.6	600	chr3R	20330959	intergenic	Sirt2 +	chr3R	20331259	intergenic	Sirt2 +	chr3R	20331559	intergenic	not near genes	chr3R_28_20330001	chr3R_20330001	RAL-382
3135	chr3R	20506523	20506606	chr3R	20507387	20507459	BS	27	855	0.0	8.0	4.0	5.4	936	chr3R	20506523	intergenic	Or92a +	chr3R	20506991	intergenic	CG4288 -	chr3R	20507459	3` UTR	CG4288 -	chr3R_27_20505001	chr3R_20505001	RAL-382
3139	chr3R	20512952	20513021	chr3R	20515705	20515774	opus	21	2753	8.0	0.0	4.0	4.2	2822	chr3R	20512952	intergenic	CG4288 -	chr3R	20514363	intergenic	not near genes	chr3R	20515774	intergenic	not near genes	chr3R_21_20510001	chr3R_20510001	RAL-382
3156	chr3R	20854433	20854489	chr3R	20859274	20859328	Doc	16	4838	1.0	11.5	6.2	2.2	4895	chr3R	20854433	intron	Ir93a -	chr3R	20856880	intron	Ir93a -	chr3R	20859328	exon	Ir93a -	chr3R_16_20855001	chr3R_20855001	RAL-382
3157	chr3R	20854494	20854508	chr3R	20859269	20859341	Doc	9	4823	1.0	10.0	5.5	1.4	4847	chr3R	20854494	intron	Ir93a -	chr3R	20856918	intron	Ir93a -	chr3R	20859341	exon	Ir93a -	chr3R_9_20855001	chr3R_20855001	RAL-382
3166	chr3R	21141668	21141703	chr3R	21150161	21150211	Tirant	6	8513	8.5	7.5	8.0	0.7	8543	chr3R	21141668	intron	SNF4Agamma +	chr3R	21145940	intron	SNF4Agamma +	chr3R	21150211	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-382
3186	chr3R	21761116	21761150	chr3R	21768524	21768551	mdg1	10	7431	7.5	6.0	6.8	1.3	7435	chr3R	21761116	exon	CG42335 +	chr3R	21764834	intron	CG42335 +	chr3R	21768551	exon	CG42335 +	chr3R_10_21760001	chr3R_21760001	RAL-382
3206	chr3R	22234644	22234711	chr3R	22236012	22236080	pogo	26	1368	6.5	10.0	8.2	2.8	1436	chr3R	22234644	intron	SKIP +	chr3R	22235362	intron	SKIP +	chr3R	22236080	intron	SKIP +	chr3R_26_22235001	chr3R_22235001	RAL-382
3207	chr3R	22239485	22239525	chr3R	22248583	22248623	roo	16	9096	7.5	0.5	4.0	3.2	9138	chr3R	22239485	intron	SKIP +	chr3R	22244054	intron	SKIP +	chr3R	22248623	intron	SKIP +	chr3R_16_22240001	chr3R_22240001	RAL-382
3212	chr3R	22450509	22450533	chr3R	22453199	22453223	NOF	11	2687	19.0	6.5	12.8	0.8	2714	chr3R	22450509	intron	CG34376 +	chr3R	22451866	intron	CG34376 +	chr3R	22453223	intron	CG34376 +	chr3R_11_22450001	chr3R_22450001	RAL-382
3213	chr3R	22450534	22450567	chr3R	22453198	22453257	NOF	28	2684	12.0	6.5	9.2	2.7	2723	chr3R	22450534	intron	CG34376 +	chr3R	22451896	intron	CG34376 +	chr3R	22453257	intron	CG34376 +	chr3R_28_22450001	chr3R_22450001	RAL-382
3228	chr3R	22881184	22881213	chr3R	22884940	22884969	Doc	11	3756	11.0	13.5	12.2	0.8	3785	chr3R	22881184	intergenic	not near genes	chr3R	22883076	intergenic	not near genes	chr3R	22884969	intergenic	not near genes	chr3R_11_22880001	chr3R_22880001	RAL-382
3246	chr3R	23558348	23558425	chr3R	23560179	23560179	Bari1	32	1829	9.5	7.0	8.2	3.5	1831	chr3R	23558348	intron	beat-IV +	chr3R	23559264	intron	beat-IV +	chr3R	23560179	intron	beat-IV +	chr3R_32_23555001	chr3R_23555001	RAL-382
3249	chr3R	23684646	23684721	chr3R	23685182	23685238	roo	21	523	7.5	7.5	7.5	2.5	592	chr3R	23684646	exon	CG18754 +	chr3R	23684942	intron	CG18754 +	chr3R	23685238	exon	CG18754 +	chr3R_21_23680001	chr3R_23680001	RAL-382
3251	chr3R	23835362	23835429	chr3R	23844562	23844627	roo	15	9199	15.0	0.0	7.5	1.8	9265	chr3R	23835362	intron	CG34355 +	chr3R	23839994	intron	CG34355 +	chr3R	23844627	intron	CG34355 +	chr3R_15_23835001	chr3R_23835001	RAL-382
3252	chr3R	23851037	23851085	chr3R	23858754	23858802	opus	23	7717	7.0	20.5	13.8	1.6	7765	chr3R	23851037	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858802	intergenic	not near genes	chr3R_23_23850001	chr3R_23850001	RAL-382
3259	chr3R	24072065	24072120	chr3R	24072532	24072606	jockey	16	479	4.5	0.0	2.2	5.0	541	chr3R	24072065	intron	4EHP -	chr3R	24072336	intron	4EHP -	chr3R	24072606	intron	4EHP -	chr3R_16_24070001	chr3R_24070001	RAL-382
3260	chr3R	24076895	24076940	chr3R	24078387	24078457	hobo	16	1511	5.5	7.5	6.5	2.1	1562	chr3R	24076895	intron	4EHP -	chr3R	24077676	intron	4EHP -	chr3R	24078457	intron	4EHP -	chr3R_16_24075001	chr3R_24075001	RAL-382
3262	chr3R	24207193	24207237	chr3R	24212296	24212362	flea	18	5121	14.0	14.5	14.2	1.2	5169	chr3R	24207193	intron	twin -	chr3R	24209778	intron	twin -	chr3R	24212362	intron	twin -	chr3R_18_24205001	chr3R_24205001	RAL-382
3270	chr3R	24493235	24493299	chr3R	24493514	24493578	BS	20	279	6.0	10.0	8.0	2.2	343	chr3R	24493235	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493578	intergenic	not near genes	chr3R_20_24490001	chr3R_24490001	RAL-382
3274	chr3R	24594628	24594668	chr3R	24594918	24594926	pogo	14	284	7.5	13.0	10.2	1.2	298	chr3R	24594628	intron	mld +	chr3R	24594777	intron	mld +	chr3R	24594926	intron	mld +	chr3R_14_24590001	chr3R_24590001	RAL-382
3279	chr3R	24730064	24730103	chr3R	24732476	24732496	Doc	4	2415	8.5	2.0	5.2	0.6	2432	chr3R	24730064	intron	tok +	chr3R	24731280	intron	tok +	chr3R	24732496	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-382
3286	chr3R	24927086	24927147	chr3R	24931927	24931982	Doc	29	4840	12.0	10.5	11.2	2.4	4896	chr3R	24927086	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931982	intergenic	CG11771 +	chr3R_29_24925001	chr3R_24925001	RAL-382
3306	chr3R	25725788	25725849	chr3R	25734998	25735059	roo	25	9210	10.5	14.0	12.2	1.9	9271	chr3R	25725788	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735059	intron	LpR2 -	chr3R_25_25730001	chr3R_25730001	RAL-382
3310	chr3R	25832663	25832678	chr3R	25841895	25841910	roo	6	9232	10.5	10.0	10.2	0.5	9247	chr3R	25832663	exon	alpha4GT2 +	chr3R	25837286	intron	alpha4GT2 +	chr3R	25841910	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-382
3311	chr3R	25832680	25832710	chr3R	25841882	25841940	roo	15	9225	4.0	8.5	6.2	2.1	9260	chr3R	25832680	exon	alpha4GT2 +	chr3R	25837310	intron	alpha4GT2 +	chr3R	25841940	exon	alpha4GT2 +	chr3R_15_25835001	chr3R_25835001	RAL-382
3329	chr3R	26376282	26376355	chr3R	26385492	26385580	roo	24	9209	6.0	0.0	3.0	6.0	9298	chr3R	26376282	intergenic	not near genes	chr3R	26380931	intergenic	not near genes	chr3R	26385580	intergenic	not near genes	chr3R_24_26380001	chr3R_26380001	RAL-382
3332	chr3R	26510472	26510532	chr3R	26519577	26519637	roo	25	9105	5.5	7.5	6.5	3.3	9165	chr3R	26510472	intron	plum -	chr3R	26515054	intron	plum -	chr3R	26519637	intron,5` UTR	plum -,CR45226 +	chr3R_25_26515001	chr3R_26515001	RAL-382
3337	chr3R	26558280	26558297	chr3R	26565643	26565660	Stalker4	11	7361	16.5	9.5	13.0	0.8	7380	chr3R	26558280	intron	scrib +	chr3R	26561970	intron	scrib +	chr3R	26565660	intron	scrib +	chr3R_11_26560001	chr3R_26560001	RAL-382
3338	chr3R	26558308	26558351	chr3R	26565638	26565708	Stalker4	9	7340	6.0	9.0	7.5	1.1	7400	chr3R	26558308	intron	scrib +	chr3R	26562008	intron	scrib +	chr3R	26565708	intron	scrib +	chr3R_9_26560001	chr3R_26560001	RAL-382
3342	chr3R	26642688	26642746	chr3R	26643131	26643189	jockey	25	443	12.5	11.0	11.8	2.0	501	chr3R	26642688	intergenic	not near genes	chr3R	26642938	intergenic	not near genes	chr3R	26643189	intergenic	not near genes	chr3R_25_26640001	chr3R_26640001	RAL-382
3353	chr3R	26810508	26810575	chr3R	26811043	26811094	roo	29	532	6.5	10.5	8.5	3.1	586	chr3R	26810508	intron	Tl +	chr3R	26810801	intron	Tl +	chr3R	26811094	intron	Tl +	chr3R_29_26810001	chr3R_26810001	RAL-382
3357	chr3R	27007360	27007426	chr3R	27016545	27016611	roo	36	9183	15.0	8.0	11.5	2.9	9251	chr3R	27007360	intron	RYa-R +	chr3R	27011986	intron	RYa-R +	chr3R	27016611	intron	RYa-R +	chr3R_36_27010001	chr3R_27010001	RAL-382
3365	chr3R	27140470	27140539	chr3R	27148130	27148194	412	27	7658	11.0	6.5	8.8	2.8	7724	chr3R	27140470	intron	CG6051 -	chr3R	27144332	intron	CG6051 -	chr3R	27148194	intron	CG6051 -	chr3R_27_27140001	chr3R_27140001	RAL-382
3369	chr3R	27342751	27342820	chr3R	27351382	27351451	Tirant	24	8628	7.5	12.0	9.8	2.2	8700	chr3R	27342751	intron	CG42534 +	chr3R	27347101	intron	CG42534 +	chr3R	27351451	intron	CG42534 +	chr3R_24_27345001	chr3R_27345001	RAL-382
3372	chr3R	27521118	27521174	chr3R	27530377	27530433	roo	31	9259	10.5	20.0	15.2	1.9	9315	chr3R	27521118	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530433	intron	CG12885 +	chr3R_31_27525001	chr3R_27525001	RAL-382
3381	chr3R	27725533	27725581	chr3R	27731025	27731073	I-element	18	5492	15.0	9.5	12.2	1.4	5540	chr3R	27725533	intergenic	not near genes	chr3R	27728303	intergenic	not near genes	chr3R	27731073	intergenic	not near genes	chr3R_18_27725001	chr3R_27725001	RAL-382
3382	chr3R	27791616	27791635	chr3R	27794813	27794833	Rt1c	5	3198	15.0	18.5	16.8	0.3	3217	chr3R	27791616	intron	CG34353 -	chr3R	27793224	intron	CG34353 -	chr3R	27794833	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	RAL-382
3383	chr3R	27791638	27791648	chr3R	27794795	27794846	Rt1c	5	3187	13.0	14.5	13.8	0.3	3208	chr3R	27791638	intron	CG34353 -	chr3R	27793242	intron	CG34353 -	chr3R	27794846	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	RAL-382
3385	chr3R	27856718	27856783	chr3R	27858251	27858316	hopper2	26	1530	9.0	10.5	9.8	2.4	1598	chr3R	27856718	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858316	intron	CG34353 -	chr3R_26_27855001	chr3R_27855001	RAL-382
3386	chr3R	27862914	27862926	chr3R	27868269	27868281	Transpac	5	5355	19.0	11.0	15.0	0.3	5367	chr3R	27862914	intron	CG34353 -	chr3R	27865598	intron	CG34353 -	chr3R	27868281	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-382
3387	chr3R	27862931	27862978	chr3R	27868261	27868322	Transpac	18	5347	11.5	10.0	10.8	1.5	5391	chr3R	27862931	intron	CG34353 -	chr3R	27865626	intron	CG34353 -	chr3R	27868322	intron	CG34353 -	chr3R_18_27865001	chr3R_27865001	RAL-382
3388	chr3R	27875660	27875724	chr3R	27882764	27882829	297	26	7102	7.0	12.0	9.5	2.5	7169	chr3R	27875660	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882829	intron	CG34353 -	chr3R_26_27875001	chr3R_27875001	RAL-382
3391	chr3R	28068486	28068524	chr3R	28073951	28073975	I-element	8	5482	0.0	8.5	4.2	1.5	5489	chr3R	28068486	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073975	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	RAL-382
3395	chr3R	28173624	28173692	chr3R	28181104	28181172	mdg1	31	7480	9.0	8.0	8.5	3.3	7548	chr3R	28173624	intron	CG34354 +	chr3R	28177398	intron	CG34354 +	chr3R	28181172	intron	CG34354 +	chr3R_31_28175001	chr3R_28175001	RAL-382
3398	chr3R	28253307	28253318	chr3R	28255860	28255878	jockey	4	2558	16.5	12.5	14.5	0.3	2571	chr3R	28253307	intergenic	not near genes	chr3R	28254592	intergenic	not near genes	chr3R	28255878	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-382
3399	chr3R	28253322	28253356	chr3R	28255856	28255915	jockey	13	2544	6.5	11.5	9.0	1.3	2593	chr3R	28253322	intergenic	not near genes	chr3R	28254618	intergenic	not near genes	chr3R	28255915	intergenic	not near genes	chr3R_13_28250001	chr3R_28250001	RAL-382
3400	chr3R	28302054	28302115	chr3R	28302546	28302607	jockey	28	492	12.5	8.5	10.5	2.4	553	chr3R	28302054	intergenic	not near genes	chr3R	28302330	intergenic	not near genes	chr3R	28302607	intergenic	not near genes	chr3R_28_28300001	chr3R_28300001	RAL-382
3408	chr3R	28758240	28758253	chr3R	28763907	28763920	roo	9	5667	21.5	0.0	10.8	0.8	5680	chr3R	28758240	intergenic	aqrs -	chr3R	28761080	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_9_28760001	chr3R_28760001	RAL-382
3409	chr3R	28758272	28758318	chr3R	28771329	28771375	Stalker4	28	13057	5.5	8.0	6.8	3.6	13103	chr3R	28758272	intergenic	aqrs -	chr3R	28764824	intergenic	not near genes	chr3R	28771375	intergenic	not near genes	chr3R_28_28760001	chr3R_28760001	RAL-382
3410	chr3R	28763909	28763918	chr3R	28771402	28771411	Stalker4	6	7493	0.0	22.0	11.0	0.5	7502	chr3R	28763909	intergenic	not near genes	chr3R	28767660	intergenic	not near genes	chr3R	28771411	intergenic	not near genes	chr3R_6_28765001	chr3R_28765001	RAL-382
3411	chr3R	28792830	28792859	chr3R	28797975	28797995	jockey	5	5141	7.5	5.5	6.5	0.7	5165	chr3R	28792830	intergenic	not near genes	chr3R	28795412	intergenic	not near genes	chr3R	28797995	intergenic	not near genes	chr3R_5_28795001	chr3R_28795001	RAL-382
3412	chr3R	28792860	28792898	chr3R	28797969	28798043	jockey	4	5132	2.5	5.0	3.8	0.8	5183	chr3R	28792860	intergenic	not near genes	chr3R	28795452	intergenic	not near genes	chr3R	28798043	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	RAL-382
3425	chr3R	29079348	29079407	chr3R	29080770	29080837	NOF	15	1424	6.5	0.0	3.2	3.6	1489	chr3R	29079348	intron	CG11873 +	chr3R	29080092	intron	CG11873 +	chr3R	29080837	intron	CG11873 +	chr3R_15_29080001	chr3R_29080001	RAL-382
3437	chr3R	29319784	29319858	chr3R	29320153	29320211	jockey	23	367	8.0	13.0	10.5	2.0	427	chr3R	29319784	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320211	intergenic	not near genes	chr3R_23_29320001	chr3R_29320001	RAL-382
3442	chr3R	29406577	29406637	chr3R	29407907	29407938	jockey	11	1330	4.0	10.5	7.2	1.3	1361	chr3R	29406577	intron	Ptp99A +	chr3R	29407258	intron	Ptp99A +	chr3R	29407938	intron	Ptp99A +	chr3R_11_29405001	chr3R_29405001	RAL-382
3455	chr3R	29738219	29738293	chr3R	29739736	29739750	hobo	21	1513	10.0	8.0	9.0	2.1	1531	chr3R	29738219	intergenic	CG1969 +,CG7598 +	chr3R	29738984	intron	CG1969 +	chr3R	29739750	5` UTR	CG1969 +	chr3R_21_29735001	chr3R_29735001	RAL-382
3457	chr3R	29760316	29760383	chr3R	29761567	29761634	pogo	28	1249	11.5	0.0	5.8	4.1	1318	chr3R	29760316	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761634	intergenic	not near genes	chr3R_28_29760001	chr3R_29760001	RAL-382
3460	chr3R	29881977	29882045	chr3R	29891184	29891252	roo	28	9207	15.0	11.0	13.0	2.0	9275	chr3R	29881977	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891252	intron	CG31038 +	chr3R_28_29885001	chr3R_29885001	RAL-382
3472	chr3R	30084813	30084878	chr3R	30086330	30086368	hobo	17	1514	10.0	11.0	10.5	1.5	1555	chr3R	30084813	intron	sima +	chr3R	30085590	intron	sima +	chr3R	30086368	intron	sima +	chr3R_17_30085001	chr3R_30085001	RAL-382
3480	chr3R	30238719	30238789	chr3R	30239933	30240003	1360	45	1214	10.5	11.0	10.8	3.8	1284	chr3R	30238719	intergenic	not near genes	chr3R	30239361	intergenic	not near genes	chr3R	30240003	intergenic	not near genes	chr3R_45_30235001	chr3R_30235001	RAL-382
3486	chr3R	30317275	30317355	chr3R	30324917	30324997	roo	22	7639	4.0	1.0	2.5	6.3	7722	chr3R	30317275	intron	hdc +	chr3R	30321136	intron	hdc +	chr3R	30324997	intron	hdc +	chr3R_22_30320001	chr3R_30320001	RAL-382
3488	chr3R	30375497	30375526	chr3R	30383172	30383201	412	17	7675	22.5	9.0	15.8	1.0	7704	chr3R	30375497	intergenic	not near genes	chr3R	30379349	intergenic	not near genes	chr3R	30383201	intergenic	not near genes	chr3R_17_30375001	chr3R_30375001	RAL-382
3489	chr3R	30375527	30375563	chr3R	30383171	30383238	412	19	7670	12.5	9.0	10.8	1.6	7711	chr3R	30375527	intergenic	not near genes	chr3R	30379382	intergenic	not near genes	chr3R	30383238	intergenic	not near genes	chr3R_19_30375001	chr3R_30375001	RAL-382
3490	chr3R	30396176	30396235	chr3R	30404492	30404551	roo	32	8316	8.0	16.5	12.2	2.4	8375	chr3R	30396176	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404551	5` UTR	CR45570 +	chr3R_32_30400001	chr3R_30400001	RAL-382
3492	chr3R	30480452	30480473	chr3R	30482957	30482991	jockey	11	2514	13.5	1.0	7.2	1.3	2539	chr3R	30480452	intron	PH4alphaEFB +	chr3R	30481722	intron	PH4alphaEFB +	chr3R	30482991	intron	PH4alphaEFB +	chr3R_11_30480001	chr3R_30480001	RAL-382
3493	chr3R	30480474	30480504	chr3R	30482942	30483022	jockey	12	2507	5.5	1.0	3.2	2.9	2548	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481748	intron	PH4alphaEFB +	chr3R	30483022	intron	PH4alphaEFB +	chr3R_12_30480001	chr3R_30480001	RAL-382
3506	chr3R	30679474	30679543	chr3R	30686993	30687062	blood	21	7517	7.5	8.5	8.0	2.3	7588	chr3R	30679474	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687062	intergenic	not near genes	chr3R_21_30680001	chr3R_30680001	RAL-382
3514	chr3R	30818769	30818830	chr3R	30820384	30820415	1360	38	1613	15.5	8.0	11.8	3.0	1646	chr3R	30818769	intron	cindr +	chr3R	30819592	intron	cindr +	chr3R	30820415	intron	cindr +	chr3R_38_30815001	chr3R_30815001	RAL-382
3524	chr3R	31074190	31074261	chr3R	31081838	31081916	springer	22	7652	7.0	2.0	4.5	4.0	7726	chr3R	31074190	intron	Sox100B +	chr3R	31078053	intron	Sox100B +	chr3R	31081916	exon	Sox100B +	chr3R_22_31075001	chr3R_31075001	RAL-382
3528	chr3R	31279323	31279398	chr3R	31285564	31285626	diver	27	6233	4.5	4.5	4.5	4.9	6303	chr3R	31279323	intergenic	not near genes	chr3R	31282474	intergenic	not near genes	chr3R	31285626	intergenic	not near genes	chr3R_27_31280001	chr3R_31280001	RAL-382
3530	chr3R	31330397	31330407	chr3R	31335649	31335659	copia	5	5252	7.5	7.0	7.2	0.6	5262	chr3R	31330397	intron	CG34347 +	chr3R	31333028	intron	CG34347 +	chr3R	31335659	intron	CG34347 +	chr3R_5_31330001	chr3R_31330001	RAL-382
3536	chr3R	31413048	31413100	chr3R	31418298	31418319	copia	7	5236	3.5	0.0	1.8	2.5	5271	chr3R	31413048	intron	Gprk2 +	chr3R	31415684	intron	Gprk2 +	chr3R	31418319	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	RAL-382
3549	chr3R	31691480	31691532	chr3R	31696296	31696359	Doc	22	4824	4.0	9.5	6.8	2.8	4879	chr3R	31691480	intergenic	not near genes	chr3R	31693920	intergenic	not near genes	chr3R	31696359	intergenic	not near genes	chr3R_22_31690001	chr3R_31690001	RAL-382
3558	chr3R	31997951	31997959	chr3R	32005471	32005479	blood	8	7520	21.0	9.0	15.0	0.5	7528	chr3R	31997951	intron	heph -	chr3R	32001715	intron	heph -	chr3R	32005479	intron	heph -	chr3R_8_32000001	chr3R_32000001	RAL-382
3559	chr3R	31997961	31998015	chr3R	32005469	32005535	blood	26	7515	9.0	8.5	8.8	2.7	7574	chr3R	31997961	intron	heph -	chr3R	32001748	intron	heph -	chr3R	32005535	intron	heph -	chr3R_26_32000001	chr3R_32000001	RAL-382
3560	chr4	76451	76510	chr4	81944	82003	I-element	14	5491	8.0	9.5	8.8	1.4	5552	chr4	76451	intron	pan +	chr4	79227	intron	pan +	chr4	82003	intron	pan +	chr4_14_75001	chr4_75001	RAL-382
3565	chr4	319950	320015	chr4	328176	328241	Stalker2	31	8226	7.0	10.5	8.8	3.2	8291	chr4	319950	3` UTR	CG32850 +	chr4	324096	intron	CG32850 +	chr4	328241	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_31_320001	chr4_320001	RAL-382
3568	chr4	671572	671581	chr4	680205	680214	Tirant	6	8633	23.0	15.0	19.0	0.3	8642	chr4	671572	intron	CG11360 +	chr4	675893	intron	CG11360 +	chr4	680214	intron	CG11360 +	chr4_6_675001	chr4_675001	RAL-382
3569	chr4	671584	671623	chr4	680196	680255	Tirant	18	8630	11.5	14.0	12.8	1.3	8671	chr4	671584	intron	CG11360 +	chr4	675920	intron	CG11360 +	chr4	680255	intron	CG11360 +	chr4_18_675001	chr4_675001	RAL-382
3577	chrX	295813	295830	chrX	303483	303498	412	5	7669	19.5	9.0	14.2	0.3	7685	chrX	295813	intron	CG3777 +	chrX	299656	intron	CG3777 +	chrX	303498	intron	CG3777 +	chrX_5_295001	chrX_295001	RAL-382
3578	chrX	295833	295880	chrX	303477	303550	412	22	7662	12.0	8.0	10.0	2.0	7717	chrX	295833	intron	CG3777 +	chrX	299692	intron	CG3777 +	chrX	303550	intron	CG3777 +	chrX_22_295001	chrX_295001	RAL-382
3579	chrX	428388	428444	chrX	434604	434679	3S18	16	6233	6.5	6.0	6.2	2.2	6291	chrX	428388	intron	CG32816 -	chrX	431534	intron	CG32816 -	chrX	434679	intron	CG32816 -	chrX_16_430001	chrX_430001	RAL-382
3583	chrX	551383	551447	chrX	558995	559059	412	14	7610	5.0	7.0	6.0	2.0	7676	chrX	551383	intron	Appl +	chrX	555221	intron	Appl +	chrX	559059	intron	Appl +	chrX_14_555001	chrX_555001	RAL-382
3592	chrX	812235	812259	chrX	817914	817938	297	12	5678	16.5	13.0	14.8	0.8	5703	chrX	812235	intron	CG43867 -	chrX	815086	intron	CG43867 -	chrX	817938	intron	CG43867 -	chrX_12_815001	chrX_815001	RAL-382
3593	chrX	812267	812294	chrX	817899	817973	297	12	5669	8.5	9.0	8.8	1.2	5706	chrX	812267	intron	CG43867 -	chrX	815120	intron	CG43867 -	chrX	817973	intron	CG43867 -	chrX_12_815001	chrX_815001	RAL-382
3594	chrX	827560	827606	chrX	835402	835468	roo	11	7845	9.0	0.0	4.5	2.0	7908	chrX	827560	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835468	intron	CG43867 -	chrX_11_830001	chrX_830001	RAL-382
3595	chrX	827608	827630	chrX	835401	835492	roo	9	7854	5.0	0.0	2.5	2.6	7884	chrX	827608	intron	CG43867 -	chrX	831550	intron	CG43867 -	chrX	835492	intron	CG43867 -	chrX_9_830001	chrX_830001	RAL-382
3598	chrX	906665	906720	chrX	908501	908559	S-element	19	1836	9.5	7.5	8.5	2.0	1894	chrX	906665	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908559	intron	CG43867 -	chrX_19_905001	chrX_905001	RAL-382
3600	chrX	1033309	1033324	chrX	1040992	1041001	412	10	7682	10.5	6.0	8.2	1.1	7692	chrX	1033309	intron	su(w[a]) +	chrX	1037155	intron	su(w[a]) +	chrX	1041001	intron	su(w[a]) +	chrX_10_1035001	chrX_1035001	RAL-382
3603	chrX	1063722	1063746	chrX	1072565	1072589	roo	12	8843	14.0	12.5	13.2	0.8	8867	chrX	1063722	intron	CR44779 +	chrX	1068156	intron	CR44779 +	chrX	1072589	intron	CR44779 +	chrX_12_1065001	chrX_1065001	RAL-382
3605	chrX	1357740	1357802	chrX	1367960	1368007	Doc	34	10219	11.0	10.0	10.5	3.0	10267	chrX	1357740	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1368007	intergenic	not near genes	chrX_34_1360001	chrX_1360001	RAL-382
3608	chrX	1517998	1518070	chrX	1523448	1523467	jockey	31	5446	6.0	16.5	11.2	2.5	5469	chrX	1517998	intergenic	inc +	chrX	1520732	intergenic	not near genes	chrX	1523467	intergenic	not near genes	chrX_31_1520001	chrX_1520001	RAL-382
3610	chrX	1930492	1930564	chrX	1938113	1938185	opus	30	7620	8.0	9.5	8.8	3.1	7693	chrX	1930492	3` UTR	CG11596 +	chrX	1934338	intergenic	not near genes	chrX	1938185	3` UTR	CG3857 -	chrX_30_1930001	chrX_1930001	RAL-382
3611	chrX	1954867	1954917	chrX	1962831	1962847	Stalker2	13	7962	3.0	3.5	3.2	3.1	7980	chrX	1954867	intron	Hr4 +	chrX	1958857	intron	Hr4 +	chrX	1962847	intron	Hr4 +	chrX_13_1955001	chrX_1955001	RAL-382
3615	chrX	2399795	2399871	chrX	2408198	2408253	roo	14	8388	6.5	1.0	3.8	2.9	8458	chrX	2399795	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408253	intergenic	not near genes	chrX_14_2400001	chrX_2400001	RAL-382
3620	chrX	2610340	2610412	chrX	2617507	2617579	HMS-Beagle	14	7165	5.5	10.5	8.0	1.6	7239	chrX	2610340	intergenic	CG8636 -	chrX	2613960	intergenic	not near genes	chrX	2617579	intergenic	Tsp3A -	chrX_14_2610001	chrX_2610001	RAL-382
3621	chrX	2664344	2664387	chrX	2665540	2665583	1360	22	1195	18.0	12.0	15.0	1.4	1239	chrX	2664344	intron	sgg +	chrX	2664964	intron	sgg +	chrX	2665583	intron	sgg +	chrX_22_2660001	chrX_2660001	RAL-382
3622	chrX	2664390	2664408	chrX	2665539	2665581	1360	14	1189	12.0	11.5	11.8	1.1	1191	chrX	2664390	intron	sgg +	chrX	2664986	intron	sgg +	chrX	2665581	intron	sgg +	chrX_14_2660001	chrX_2660001	RAL-382
3626	chrX	2844858	2844925	chrX	2852318	2852385	mdg1	9	7460	5.5	7.5	6.5	1.2	7527	chrX	2844858	intron	kirre +	chrX	2848622	intron	kirre +	chrX	2852385	intron	kirre +	chrX_9_2845001	chrX_2845001	RAL-382
3633	chrX	3057981	3058043	chrX	3058272	3058334	pogo	24	290	7.0	7.5	7.2	2.9	353	chrX	3057981	intron	kirre +	chrX	3058158	intron	kirre +	chrX	3058334	intron	kirre +	chrX_24_3055001	chrX_3055001	RAL-382
3634	chrX	3075600	3075655	chrX	3080956	3081011	Transpac	15	5350	9.0	6.0	7.5	1.8	5411	chrX	3075600	intron	kirre +	chrX	3078306	intron	kirre +	chrX	3081011	intron	kirre +	chrX_15_3075001	chrX_3075001	RAL-382
3641	chrX	3218490	3218529	chrX	3227679	3227728	roo	10	9198	4.5	11.0	7.8	1.1	9238	chrX	3218490	intron	dnc +	chrX	3223109	intron	dnc +	chrX	3227728	intron	dnc +	chrX_10_3220001	chrX_3220001	RAL-382
3652	chrX	3414980	3415041	chrX	3421215	3421275	3S18	19	6233	5.5	8.5	7.0	2.4	6295	chrX	3414980	intron,intron	CR44999 +,CG12535 -	chrX	3418128	intron,intron	CR44999 +,CG12535 -	chrX	3421275	intron,intron	CR44999 +,CG12535 -	chrX_19_3415001	chrX_3415001	RAL-382
3654	chrX	3493050	3493116	chrX	3502259	3502324	roo	16	9204	6.0	3.5	4.8	2.8	9274	chrX	3493050	intron,intron	CR44999 +,Gas8 -	chrX	3497687	intron,intron	CR44999 +,Gas8 -	chrX	3502324	intron,intron	CR44999 +,Gas8 -	chrX_16_3495001	chrX_3495001	RAL-382
3657	chrX	3597507	3597579	chrX	3619719	3619776	roo	12	22210	8.0	6.0	7.0	1.5	22269	chrX	3597507	intron	AstA-R1 +	chrX	3608642	intron	AstA-R1 +	chrX	3619776	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	RAL-382
3661	chrX	3726724	3726776	chrX	3730171	3730183	NOF	7	3441	3.0	0.0	1.5	2.8	3459	chrX	3726724	intron	tlk +	chrX	3728454	intron	tlk +	chrX	3730183	intron	tlk +	chrX_7_3725001	chrX_3725001	RAL-382
3665	chrX	3986836	3986889	chrX	3994505	3994572	412	28	7681	9.0	6.5	7.8	3.2	7736	chrX	3986836	intergenic	not near genes	chrX	3990704	intergenic	not near genes	chrX	3994572	intergenic	not near genes	chrX_28_3990001	chrX_3990001	RAL-382
3671	chrX	4157857	4157916	chrX	4164960	4165013	297	19	7102	5.5	8.0	6.8	2.4	7156	chrX	4157857	intron	Fas2 -	chrX	4161435	intron	Fas2 -	chrX	4165013	intron	Fas2 -	chrX_19_4160001	chrX_4160001	RAL-382
3681	chrX	4700350	4700417	chrX	4700742	4700810	jockey	28	393	8.0	14.0	11.0	2.3	460	chrX	4700350	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700810	3` UTR	ctp +	chrX_28_4700001	chrX_4700001	RAL-382
3686	chrX	4763210	4763274	chrX	4763748	4763812	Stalker4	27	535	8.5	7.5	8.0	3.0	602	chrX	4763210	intergenic	not near genes	chrX	4763511	intergenic	not near genes	chrX	4763812	intergenic	not near genes	chrX_27_4760001	chrX_4760001	RAL-382
3687	chrX	4792338	4792396	chrX	4792814	4792879	jockey	15	481	5.5	7.0	6.2	2.1	541	chrX	4792338	intergenic	not near genes	chrX	4792608	intergenic	not near genes	chrX	4792879	intergenic	not near genes	chrX_15_4790001	chrX_4790001	RAL-382
3688	chrX	4827937	4827993	chrX	4835338	4835414	Stalker4	15	7412	3.0	5.0	4.0	3.0	7477	chrX	4827937	intergenic	not near genes	chrX	4831676	intergenic	not near genes	chrX	4835414	intergenic	not near genes	chrX_15_4830001	chrX_4830001	RAL-382
3691	chrX	4990002	4990074	chrX	4997266	4997338	roo	29	7263	7.0	8.5	7.8	3.3	7336	chrX	4990002	intron	CR44833 -	chrX	4993670	intron	CR44833 -	chrX	4997338	intron	CR44833 -	chrX_29_4990001	chrX_4990001	RAL-382
3692	chrX	5096232	5096301	chrX	5103847	5103916	springer	16	7614	2.0	8.0	5.0	2.7	7684	chrX	5096232	intron,intron	CG15465 +,rg +	chrX	5100074	intron,intron	CG15465 +,rg +	chrX	5103916	intron,intron	CG15465 +,rg +	chrX_16_5100001	chrX_5100001	RAL-382
3697	chrX	5338664	5338728	chrX	5339967	5340026	jockey	6	1297	8.0	3.0	5.5	0.9	1362	chrX	5338664	intergenic	not near genes	chrX	5339345	intergenic	not near genes	chrX	5340026	intergenic	SK +	chrX_6_5335001	chrX_5335001	RAL-382
3701	chrX	5481021	5481092	chrX	5485023	5485102	I-element	9	4009	0.0	0.5	0.2	7.5	4081	chrX	5481021	intron	SPR +	chrX	5483062	intron	SPR +	chrX	5485102	intron	SPR +	chrX_9_5480001	chrX_5480001	RAL-382
3703	chrX	5524800	5524823	chrX	5528713	5528736	412	14	3912	18.5	5.5	12.0	1.1	3936	chrX	5524800	intergenic	snoRNA:Psi28S-3342 -	chrX	5526768	intergenic	not near genes	chrX	5528736	intergenic	Vsx2 -	chrX_14_5525001	chrX_5525001	RAL-382
3704	chrX	5727373	5727416	chrX	5732162	5732205	Doc	21	4789	7.0	6.5	6.8	2.7	4832	chrX	5727373	intron	CG32758 -	chrX	5729789	intron	CG32758 -	chrX	5732205	intron	CG32758 -	chrX_21_5725001	chrX_5725001	RAL-382
3708	chrX	5883769	5883789	chrX	5884060	5884080	pogo	5	288	14.0	8.5	11.2	0.4	311	chrX	5883769	intron	CR45668 -	chrX	5883924	intron	CR45668 -	chrX	5884080	intron	CR45668 -	chrX_5_5880001	chrX_5880001	RAL-382
3709	chrX	5883790	5883832	chrX	5884055	5884114	pogo	12	288	6.0	6.5	6.2	1.7	324	chrX	5883790	intron	CR45668 -	chrX	5883952	intron	CR45668 -	chrX	5884114	intron	CR45668 -	chrX_12_5880001	chrX_5880001	RAL-382
3710	chrX	5884127	5884181	chrX	5884410	5884472	pogo	26	288	12.0	5.0	8.5	2.7	345	chrX	5884127	intron	CR45668 -	chrX	5884300	intron	CR45668 -	chrX	5884472	intron	CR45668 -	chrX_26_5880001	chrX_5880001	RAL-382
3716	chrX	6171550	6171609	chrX	6179033	6179062	Quasimodo	16	7480	9.5	5.5	7.5	1.9	7512	chrX	6171550	intron	Ca-alpha1T -	chrX	6175306	intron	Ca-alpha1T -	chrX	6179062	intron	Ca-alpha1T -	chrX_16_6175001	chrX_6175001	RAL-382
3718	chrX	6335212	6335232	chrX	6337727	6337792	Tirant	12	2556	4.5	6.0	5.2	1.9	2580	chrX	6335212	intergenic	not near genes	chrX	6336502	intergenic	not near genes	chrX	6337792	5` UTR	CG3842 +	chrX_12_6335001	chrX_6335001	RAL-382
3720	chrX	6392832	6392892	chrX	6397640	6397707	Doc	19	4814	5.5	6.5	6.0	2.7	4875	chrX	6392832	intergenic	not near genes	chrX	6395270	intergenic	not near genes	chrX	6397707	intergenic	not near genes	chrX_19_6395001	chrX_6395001	RAL-382
3721	chrX	6429965	6429992	chrX	6435486	6435496	Rt1c	9	5518	9.5	12.0	10.8	0.8	5531	chrX	6429965	intron	CG42340 -	chrX	6432730	intron	CG42340 -	chrX	6435496	intron	CG42340 -	chrX_9_6430001	chrX_6430001	RAL-382
3722	chrX	6445260	6445330	chrX	6451068	6451138	297	13	5808	6.0	5.0	5.5	2.0	5878	chrX	6445260	intron	CG42340 -	chrX	6448199	intron	CG42340 -	chrX	6451138	intron	CG42340 -	chrX_13_6445001	chrX_6445001	RAL-382
3725	chrX	6562775	6562849	chrX	6571307	6571346	Tirant	20	8518	6.0	7.0	6.5	2.7	8571	chrX	6562775	intron	CG34417 +	chrX	6567060	intron	CG34417 +	chrX	6571346	intron	CG34417 +	chrX_20_6565001	chrX_6565001	RAL-382
3727	chrX	6605483	6605487	chrX	6608547	6608551	Burdock	4	3064	11.5	2.0	6.8	0.5	3068	chrX	6605483	intron	pigs +	chrX	6607017	intron	pigs +	chrX	6608551	intron	pigs +	chrX_4_6605001	chrX_6605001	RAL-382
3741	chrX	7023562	7023630	chrX	7031001	7031030	Tabor	23	7437	6.5	7.0	6.8	2.9	7468	chrX	7023562	intron	CG12541 -	chrX	7027296	intron	CG12541 -	chrX	7031030	intron	CG12541 -	chrX_23_7025001	chrX_7025001	RAL-382
3742	chrX	7125220	7125265	chrX	7134413	7134473	roo	18	9208	1.0	7.0	4.0	3.6	9253	chrX	7125220	intergenic	not near genes	chrX	7129846	intergenic	not near genes	chrX	7134473	intergenic	not near genes	chrX_18_7125001	chrX_7125001	RAL-382
3748	chrX	7702868	7702924	chrX	7703357	7703413	jockey	22	487	8.5	9.0	8.8	2.2	545	chrX	7702868	intron	CHES-1-like -	chrX	7703140	intron	CHES-1-like -	chrX	7703413	intron	CHES-1-like -	chrX_22_7700001	chrX_7700001	RAL-382
3749	chrX	7784175	7784258	chrX	7784538	7784610	jockey	5	357	0.0	4.5	2.2	1.6	435	chrX	7784175	intergenic	not near genes	chrX	7784392	intergenic	not near genes	chrX	7784610	intergenic	not near genes	chrX_5_7780001	chrX_7780001	RAL-382
3751	chrX	7845688	7845752	chrX	7847219	7847293	hopper2	28	1540	8.0	6.5	7.2	3.4	1605	chrX	7845688	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847293	intergenic	not near genes	chrX_28_7845001	chrX_7845001	RAL-382
3753	chrX	8031390	8031448	chrX	8035749	8035807	Juan	29	4358	8.5	27.0	17.8	1.5	4417	chrX	8031390	intergenic	not near genes	chrX	8033598	intergenic	not near genes	chrX	8035807	3` UTR	CG2233 -	chrX_29_8030001	chrX_8030001	RAL-382
3761	chrX	8364803	8364877	chrX	8365250	8365341	BS	24	462	6.5	0.0	3.2	5.7	538	chrX	8364803	intron	nAChRalpha3 -	chrX	8365072	intron	nAChRalpha3 -	chrX	8365341	intron	nAChRalpha3 -	chrX_24_8365001	chrX_8365001	RAL-382
3780	chrX	8922289	8922354	chrX	8922773	8922838	jockey	16	481	5.0	7.0	6.0	2.3	549	chrX	8922289	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922838	intron	rdgA +	chrX_16_8920001	chrX_8920001	RAL-382
3781	chrX	8948714	8948781	chrX	8956274	8956340	roo	27	7559	8.0	9.0	8.5	2.8	7626	chrX	8948714	intron	rdgA +	chrX	8952527	intron	rdgA +	chrX	8956340	intron	rdgA +	chrX_27_8950001	chrX_8950001	RAL-382
3799	chrX	9575749	9575816	chrX	9576123	9576189	mdg3	18	371	4.5	6.5	5.5	2.8	440	chrX	9575749	intron,exon	CG32699 -,CG42395 -	chrX	9575969	intron,intron	CG32699 -,CG42395 -	chrX	9576189	intron,5` UTR	CG32699 -,CG42395 -	chrX_18_9575001	chrX_9575001	RAL-382
3809	chrX	10138174	10138240	chrX	10145728	10145794	412	24	7553	9.0	11.5	10.2	2.1	7620	chrX	10138174	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145794	intron,intron	RhoU +,CR44894 -	chrX_24_10140001	chrX_10140001	RAL-382
3813	chrX	10267295	10267327	chrX	10276494	10276527	roo	15	9200	0.0	18.0	9.0	1.5	9232	chrX	10267295	3` UTR	alpha-Man-I -	chrX	10271911	intron	alpha-Man-I -	chrX	10276527	3` UTR	alpha-Man-I -	chrX_15_10270001	chrX_10270001	RAL-382
3816	chrX	10348757	10348818	chrX	10356372	10356433	springer	24	7615	9.5	9.0	9.2	2.4	7676	chrX	10348757	intergenic	snoRNA:U3:9B +	chrX	10352595	intergenic	not near genes	chrX	10356433	intergenic	l(1)G0289 -	chrX_24_10350001	chrX_10350001	RAL-382
3819	chrX	10525041	10525072	chrX	10532139	10532193	297	6	7115	6.5	6.5	6.5	0.8	7152	chrX	10525041	intron	spri -	chrX	10528617	intron	spri -	chrX	10532193	intron	spri -	chrX_6_10525001	chrX_10525001	RAL-382
3821	chrX	10550816	10550828	chrX	10552333	10552345	hobo	5	1517	8.5	6.0	7.2	0.6	1529	chrX	10550816	intron	spri -	chrX	10551580	intron	spri -	chrX	10552345	intron	spri -	chrX_5_10550001	chrX_10550001	RAL-382
3822	chrX	10550840	10550882	chrX	10552330	10552399	hobo	11	1507	4.0	5.5	4.8	1.9	1559	chrX	10550840	intron	spri -	chrX	10551620	intron	spri -	chrX	10552399	intron	spri -	chrX_11_10550001	chrX_10550001	RAL-382
3824	chrX	10686005	10686042	chrX	10691192	10691229	roo	13	5186	12.5	0.5	6.5	1.7	5224	chrX	10686005	intron	X11Lbeta +	chrX	10688617	intron	X11Lbeta +	chrX	10691229	intron	X11Lbeta +	chrX_13_10685001	chrX_10685001	RAL-382
3825	chrX	10686045	10686077	chrX	10691185	10691249	roo	12	5179	6.5	0.5	3.5	2.7	5204	chrX	10686045	intron	X11Lbeta +	chrX	10688647	intron	X11Lbeta +	chrX	10691249	intron	X11Lbeta +	chrX_12_10685001	chrX_10685001	RAL-382
3828	chrX	10772630	10772692	chrX	10772763	10772825	Tirant	16	129	7.5	2.5	5.0	2.7	195	chrX	10772630	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772825	intron	CG15211 +	chrX_16_10770001	chrX_10770001	RAL-382
3835	chrX	11095953	11096014	chrX	11103105	11103166	HMS-Beagle	27	7152	9.5	10.0	9.8	2.5	7213	chrX	11095953	intergenic	not near genes	chrX	11099560	intergenic	not near genes	chrX	11103166	intron	CG42249 +	chrX_27_11095001	chrX_11095001	RAL-382
3838	chrX	11184238	11184275	chrX	11189329	11189385	flea	10	5120	5.0	5.0	5.0	1.7	5147	chrX	11184238	intergenic	not near genes	chrX	11186812	intergenic	not near genes	chrX	11189385	intergenic	not near genes	chrX_10_11185001	chrX_11185001	RAL-382
3843	chrX	11312016	11312086	chrX	11319419	11319489	Stalker2	16	7399	7.5	6.0	6.8	2.1	7473	chrX	11312016	intergenic	not near genes	chrX	11315752	intergenic	not near genes	chrX	11319489	intergenic	not near genes	chrX_16_11315001	chrX_11315001	RAL-382
3851	chrX	11535001	11535046	chrX	11541521	11541566	Burdock	17	6520	12.5	8.5	10.5	1.5	6565	chrX	11535001	intron	Drak +	chrX	11538284	intron	Drak +	chrX	11541566	intron	Drak +	chrX_17_11535001	chrX_11535001	RAL-382
3852	chrX	11571407	11571477	chrX	11571698	11571768	pogo	31	291	11.0	6.0	8.5	3.3	361	chrX	11571407	3` UTR,3` UTR	CG11699 +,Kmn1 -	chrX	11571588	3` UTR	Kmn1 -	chrX	11571768	3` UTR	Kmn1 -	chrX_31_11570001	chrX_11570001	RAL-382
3854	chrX	11633383	11633432	chrX	11640487	11640535	297	18	7102	8.0	10.5	9.2	1.8	7152	chrX	11633383	intron	Ptp10D +	chrX	11636959	intron	Ptp10D +	chrX	11640535	intron	Ptp10D +	chrX_18_11635001	chrX_11635001	RAL-382
3855	chrX	11645068	11645127	chrX	11648288	11648347	NOF	21	3218	7.5	10.5	9.0	2.1	3279	chrX	11645068	intron	Ptp10D +	chrX	11646708	intron	Ptp10D +	chrX	11648347	intron	Ptp10D +	chrX_21_11645001	chrX_11645001	RAL-382
3865	chrX	12168095	12168135	chrX	12173587	12173627	I-element	6	5492	11.5	1.0	6.2	0.8	5532	chrX	12168095	intron	Ten-a +	chrX	12170861	intron	Ten-a +	chrX	12173627	intron	Ten-a +	chrX_6_12170001	chrX_12170001	RAL-382
3873	chrX	12301916	12301966	chrX	12303270	12303282	X-element	12	1341	3.5	0.0	1.8	4.3	1366	chrX	12301916	intron	Ten-a +	chrX	12302599	intron	Ten-a +	chrX	12303282	intron	Ten-a +	chrX_12_12300001	chrX_12300001	RAL-382
3875	chrX	12381811	12381853	chrX	12385774	12385816	flea	21	3961	7.0	7.0	7.0	2.6	4005	chrX	12381811	intergenic	not near genes	chrX	12383814	intergenic	not near genes	chrX	12385816	intergenic	not near genes	chrX_21_12380001	chrX_12380001	RAL-382
3889	chrX	12930547	12930599	chrX	12937713	12937765	HMS-Beagle	20	7165	8.5	13.0	10.8	1.7	7218	chrX	12930547	intron	fne +	chrX	12934156	intron	fne +	chrX	12937765	intron	fne +	chrX_20_12930001	chrX_12930001	RAL-382
3900	chrX	13401437	13401484	chrX	13401839	13401886	jockey	20	402	8.0	9.0	8.5	2.1	449	chrX	13401437	intergenic	CG1673 +,CG12725 -	chrX	13401662	intergenic	CG12725 -,CG1673 +	chrX	13401886	3` UTR	CG12725 -	chrX_20_13400001	chrX_13400001	RAL-382
3901	chrX	13429410	13429484	chrX	13430609	13430683	jockey	7	1199	0.0	5.5	2.8	1.8	1273	chrX	13429410	intergenic	not near genes	chrX	13430046	intergenic	not near genes	chrX	13430683	intergenic	not near genes	chrX_7_13430001	chrX_13430001	RAL-382
3902	chrX	13463613	13463666	chrX	13469225	13469293	mdg3	30	5626	9.0	8.5	8.8	3.1	5680	chrX	13463613	intron	Neto +	chrX	13466453	intron	Neto +	chrX	13469293	intron	Neto +	chrX_30_13465001	chrX_13465001	RAL-382
3910	chrX	13937929	13938008	chrX	13941250	13941329	I-element	15	3319	3.5	7.0	5.2	2.4	3400	chrX	13937929	intron	mamo -	chrX	13939629	intron	mamo -	chrX	13941329	intron	mamo -	chrX_15_13935001	chrX_13935001	RAL-382
3911	chrX	14030707	14030782	chrX	14035344	14035382	copia	11	4634	5.0	8.5	6.8	1.4	4675	chrX	14030707	intergenic	not near genes	chrX	14033044	intergenic	not near genes	chrX	14035382	intergenic	not near genes	chrX_11_14030001	chrX_14030001	RAL-382
3913	chrX	14104985	14105001	chrX	14114186	14114202	roo	5	9201	12.0	5.5	8.8	0.5	9217	chrX	14104985	intergenic	not near genes	chrX	14109594	intergenic	not near genes	chrX	14114202	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-382
3914	chrX	14105005	14105028	chrX	14114176	14114229	roo	8	9190	8.5	5.0	6.8	1.0	9224	chrX	14105005	intergenic	not near genes	chrX	14109617	intergenic	not near genes	chrX	14114229	5` UTR	CR44657 +	chrX_8_14105001	chrX_14105001	RAL-382
3915	chrX	14157550	14157618	chrX	14163257	14163325	297	7	5707	6.5	7.0	6.8	0.9	5775	chrX	14157550	intergenic	not near genes	chrX	14160438	intergenic	not near genes	chrX	14163325	intergenic	not near genes	chrX_7_14160001	chrX_14160001	RAL-382
3918	chrX	14304054	14304059	chrX	14310320	14310325	17.6	5	6266	0.0	6.5	3.2	1.2	6271	chrX	14304054	intergenic	not near genes	chrX	14307190	intergenic	not near genes	chrX	14310325	intergenic	not near genes	chrX_5_14305001	chrX_14305001	RAL-382
3928	chrX	14416266	14416319	chrX	14421084	14421137	F-element	24	4818	7.0	7.5	7.2	2.9	4871	chrX	14416266	intron	dpr8 +	chrX	14418702	intron	dpr8 +	chrX	14421137	intron	dpr8 +	chrX_24_14415001	chrX_14415001	RAL-382
3936	chrX	14636433	14636482	chrX	14641924	14641973	I-element	19	5489	6.5	14.0	10.2	1.7	5540	chrX	14636433	intron	NetA -	chrX	14639203	intron	NetA -	chrX	14641973	intron	NetA -	chrX_19_14635001	chrX_14635001	RAL-382
3938	chrX	14777993	14778048	chrX	14782840	14782895	Doc	25	4847	12.5	15.0	13.8	1.7	4902	chrX	14777993	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782895	intergenic	Ag5r2 -	chrX_25_14780001	chrX_14780001	RAL-382
3941	chrX	14818730	14818790	chrX	14823968	14824044	copia	22	5247	5.5	8.0	6.8	2.8	5314	chrX	14818730	intron	rut -	chrX	14821387	intron	rut -	chrX	14824044	intron	rut -	chrX_22_14820001	chrX_14820001	RAL-382
3946	chrX	14936823	14936879	chrX	14946130	14946186	roo	30	9307	11.5	9.5	10.5	2.6	9363	chrX	14936823	intron	pdgy -	chrX	14941504	intron	pdgy -	chrX	14946186	intron	pdgy -	chrX_30_14940001	chrX_14940001	RAL-382
3955	chrX	15273663	15273711	chrX	15274879	15274928	1360	7	1212	10.0	4.5	7.2	0.9	1265	chrX	15273663	intergenic	not near genes	chrX	15274296	intergenic	not near genes	chrX	15274928	intergenic	not near genes	chrX_7_15270001	chrX_15270001	RAL-382
3958	chrX	15326683	15326704	chrX	15326931	15326952	I-element	9	248	3.0	3.5	3.2	2.1	269	chrX	15326683	3` UTR	Top1 +	chrX	15326818	3` UTR	Top1 +	chrX	15326952	3` UTR	Top1 +	chrX_9_15325001	chrX_15325001	RAL-382
3961	chrX	15413011	15413036	chrX	15417363	15417388	Juan	5	4352	10.0	14.0	12.0	0.4	4377	chrX	15413011	intron	Cngl -	chrX	15415200	intron	Cngl -	chrX	15417388	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-382
3962	chrX	15413039	15413072	chrX	15417361	15417384	Juan	11	4338	5.0	13.5	9.2	1.1	4345	chrX	15413039	intron	Cngl -	chrX	15415212	intron	Cngl -	chrX	15417384	intron	Cngl -	chrX_11_15415001	chrX_15415001	RAL-382
3965	chrX	15435693	15435698	chrX	15436148	15436181	rover	4	476	0.0	10.5	5.2	0.6	488	chrX	15435693	intron	Cngl -	chrX	15435937	intron	Cngl -	chrX	15436181	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-382
3978	chrX	16222742	16222803	chrX	16231140	16231203	roo	20	8399	0.0	12.5	6.2	2.8	8461	chrX	16222742	intergenic	not near genes	chrX	16226972	intergenic	not near genes	chrX	16231203	intergenic	not near genes	chrX_20_16225001	chrX_16225001	RAL-382
3979	chrX	16245902	16245960	chrX	16246059	16246117	INE-1	23	156	8.0	7.0	7.5	2.7	215	chrX	16245902	intergenic	not near genes	chrX	16246010	intergenic	not near genes	chrX	16246117	intergenic	not near genes	chrX_23_16245001	chrX_16245001	RAL-382
3982	chrX	16340624	16340666	chrX	16349831	16349873	roo	21	9207	11.5	8.0	9.8	1.9	9249	chrX	16340624	3` UTR	Dsp1 +	chrX	16345248	intergenic	not near genes	chrX	16349873	intergenic	sl +	chrX_21_16345001	chrX_16345001	RAL-382
3983	chrX	16340667	16340691	chrX	16349824	16349898	roo	12	9203	7.5	7.0	7.2	1.5	9231	chrX	16340667	intergenic	Dsp1 +	chrX	16345282	intergenic	not near genes	chrX	16349898	intergenic	sl +	chrX_12_16345001	chrX_16345001	RAL-382
3985	chrX	16492601	16492659	chrX	16498228	16498286	mdg3	20	5627	9.0	4.5	6.8	2.6	5685	chrX	16492601	intron	para -	chrX	16495444	intron	para -	chrX	16498286	exon	para -	chrX_20_16495001	chrX_16495001	RAL-382
4000	chrX	16935957	16936031	chrX	16936424	16936466	jockey	11	465	9.5	4.5	7.0	1.4	509	chrX	16935957	intron	CG4928 +	chrX	16936212	intron	CG4928 +	chrX	16936466	intron	CG4928 +	chrX_11_16935001	chrX_16935001	RAL-382
4004	chrX	17057892	17057943	chrX	17058183	17058234	pogo	17	291	8.0	11.0	9.5	1.6	342	chrX	17057892	intron	CG45002 -	chrX	17058063	intron	CG45002 -	chrX	17058234	intron	CG45002 -	chrX_17_17055001	chrX_17055001	RAL-382
4005	chrX	17057946	17057957	chrX	17058237	17058248	pogo	5	291	8.0	20.0	14.0	0.3	302	chrX	17057946	intron	CG45002 -	chrX	17058097	intron	CG45002 -	chrX	17058248	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-382
4009	chrX	17195183	17195234	chrX	17200302	17200351	flea	16	5131	8.5	7.5	8.0	1.8	5168	chrX	17195183	3` UTR	baz +	chrX	17197767	3` UTR	baz +	chrX	17200351	3` UTR	baz +	chrX_16_17195001	chrX_17195001	RAL-382
4020	chrX	17431314	17431338	chrX	17431705	17431724	jockey	9	389	11.0	4.5	7.8	1.0	410	chrX	17431314	intron	CG12994 -	chrX	17431519	intron	CG12994 -	chrX	17431724	intron	CG12994 -	chrX_9_17430001	chrX_17430001	RAL-382
4032	chrX	17792934	17792971	chrX	17796259	17796317	flea	10	3338	6.0	4.0	5.0	1.7	3383	chrX	17792934	intron	OdsH +	chrX	17794626	intron	OdsH +	chrX	17796317	intron	OdsH +	chrX_10_17790001	chrX_17790001	RAL-382
4041	chrX	18194025	18194095	chrX	18194610	18194680	BS	30	584	13.5	10.5	12.0	2.3	655	chrX	18194025	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194680	intron	Frq2 +	chrX_30_18190001	chrX_18190001	RAL-382
4050	chrX	18429451	18429521	chrX	18434812	18434882	Transpac	30	5361	10.5	8.5	9.5	2.9	5431	chrX	18429451	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434882	intergenic	not near genes	chrX_30_18430001	chrX_18430001	RAL-382
4059	chrX	18957028	18957095	chrX	18965736	18965774	roo	31	8709	11.0	6.0	8.5	3.3	8746	chrX	18957028	intron	CG43759 +	chrX	18961401	intron	CG43759 +	chrX	18965774	intron	CG43759 +	chrX_31_18960001	chrX_18960001	RAL-382
4061	chrX	19060364	19060421	chrX	19065198	19065255	Doc	23	4834	11.0	10.5	10.8	1.9	4891	chrX	19060364	intron	CG14190 +	chrX	19062810	intron	CG14190 +	chrX	19065255	intron	CG14190 +	chrX_23_19060001	chrX_19060001	RAL-382
4070	chrX	19136507	19136581	chrX	19143477	19143535	412	23	6967	6.0	5.0	5.5	3.5	7028	chrX	19136507	intergenic	not near genes	chrX	19140021	intergenic	not near genes	chrX	19143535	3` UTR	RhoGAP18B -	chrX_23_19140001	chrX_19140001	RAL-382
4073	chrX	19356950	19357019	chrX	19358441	19358528	NOF	19	1504	5.5	0.0	2.8	5.0	1578	chrX	19356950	intron	kek5 +	chrX	19357739	intron	kek5 +	chrX	19358528	intron	kek5 +	chrX_19_19355001	chrX_19355001	RAL-382
4074	chrX	19380114	19380173	chrX	19380405	19380464	pogo	20	291	11.0	10.5	10.8	1.7	350	chrX	19380114	intron	kek5 +	chrX	19380289	intron	kek5 +	chrX	19380464	intron	kek5 +	chrX_20_19380001	chrX_19380001	RAL-382
4077	chrX	19437232	19437261	chrX	19444801	19444809	Idefix	9	7565	8.0	6.5	7.2	1.1	7577	chrX	19437232	intron	kek5 +	chrX	19441020	intron	kek5 +	chrX	19444809	intron	kek5 +	chrX_9_19440001	chrX_19440001	RAL-382
4078	chrX	19472082	19472108	chrX	19472702	19472728	jockey	8	620	14.0	8.5	11.2	0.7	646	chrX	19472082	intergenic	kek5 +	chrX	19472405	intergenic	kek5 +	chrX	19472728	intergenic	not near genes	chrX_8_19470001	chrX_19470001	RAL-382
4079	chrX	19472115	19472148	chrX	19472695	19472767	jockey	16	608	7.0	7.0	7.0	2.0	652	chrX	19472115	intergenic	kek5 +	chrX	19472441	intergenic	not near genes	chrX	19472767	intergenic	not near genes	chrX_16_19470001	chrX_19470001	RAL-382
4087	chrX	19797315	19797322	chrX	19804678	19804685	Stalker4	4	7363	14.0	7.0	10.5	0.3	7370	chrX	19797315	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804685	intergenic	not near genes	chrX_4_19800001	chrX_19800001	RAL-382
4104	chrX	20377273	20377335	chrX	20378790	20378852	hobo	5	1517	7.0	9.0	8.0	0.6	1579	chrX	20377273	intergenic	not near genes	chrX	20378062	intergenic	not near genes	chrX	20378852	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-382
4127	chrX	20836688	20836754	chrX	20844340	20844390	roo	22	7651	5.5	5.5	5.5	3.4	7702	chrX	20836688	intron	shakB -	chrX	20840539	intron	shakB -	chrX	20844390	intron	shakB -	chrX_22_20840001	chrX_20840001	RAL-382
4130	chrX	20940684	20940721	chrX	20942203	20942230	hobo	14	1516	8.0	3.5	5.8	2.1	1546	chrX	20940684	intergenic	not near genes	chrX	20941457	intergenic	not near genes	chrX	20942230	intergenic	not near genes	chrX_14_20940001	chrX_20940001	RAL-382
4131	chrX	20956922	20957009	chrX	20962416	20962501	I-element	14	5494	1.0	11.0	6.0	2.0	5579	chrX	20956922	intergenic	not near genes	chrX	20959712	intergenic	not near genes	chrX	20962501	intergenic	Ser6 -	chrX_14_20955001	chrX_20955001	RAL-382
4138	chrX	21061812	21061888	chrX	21062351	21062423	roo	19	535	6.5	12.0	9.2	1.9	611	chrX	21061812	intron	bves +	chrX	21062118	intron	bves +	chrX	21062423	intron,3` UTR	bves +,CG32512 -	chrX_19_21060001	chrX_21060001	RAL-382
4140	chrX	21086089	21086153	chrX	21087168	21087232	jockey	17	1079	10.0	9.5	9.8	1.6	1143	chrX	21086089	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087232	intergenic	not near genes	chrX_17_21085001	chrX_21085001	RAL-382
4152	chrX	21458640	21458724	chrX	21464126	21464178	Ivk	27	5483	7.5	4.5	6.0	3.9	5538	chrX	21458640	intergenic	not near genes	chrX	21461409	intergenic	not near genes	chrX	21464178	intergenic	not near genes	chrX_27_21460001	chrX_21460001	RAL-382
4153	chrX	21474363	21474433	chrX	21474779	21474849	1731	27	415	6.0	7.0	6.5	3.6	486	chrX	21474363	intergenic	not near genes	chrX	21474606	intergenic	not near genes	chrX	21474849	intergenic	not near genes	chrX_27_21470001	chrX_21470001	RAL-382
4158	chrX	21595522	21595561	chrX	21598645	21598684	micropia	10	3123	6.5	6.5	6.5	1.3	3162	chrX	21595522	intergenic	not near genes	chrX	21597103	intergenic	not near genes	chrX	21598684	intergenic	not near genes	chrX_10_21595001	chrX_21595001	RAL-382
4163	chrX	22522596	22522660	chrX	22525464	22525530	NOF	8	2870	5.5	6.5	6.0	1.1	2934	chrX	22522596	intron	CG17600 +	chrX	22524063	intron	CG17600 +	chrX	22525530	intron	CG17600 +	chrX_8_22520001	chrX_22520001	RAL-382
4165	chrX	22681447	22681459	chrX	22688955	22688967	HMS-Beagle2	6	7508	12.5	8.0	10.2	0.5	7520	chrX	22681447	intron	CR44997 +	chrX	22685207	intron	CR44997 +	chrX	22688967	intron	CR44997 +	chrX_6_22685001	chrX_22685001	RAL-382
4166	chrX	22681470	22681500	chrX	22688951	22689008	HMS-Beagle2	9	7502	7.5	7.5	7.5	1.1	7538	chrX	22681470	intron	CR44997 +	chrX	22685239	intron	CR44997 +	chrX	22689008	intron	CR44997 +	chrX_9_22685001	chrX_22685001	RAL-382
4167	chrX	22697459	22697512	chrX	22701806	22701859	Juan	16	4347	9.5	10.0	9.8	1.5	4400	chrX	22697459	intron	CR44997 +	chrX	22699659	intron	CR44997 +	chrX	22701859	intron	CR44997 +	chrX_16_22695001	chrX_22695001	RAL-382
4169	chrX	22771461	22771526	chrX	22774802	22774861	297	17	3339	7.5	6.5	7.0	2.1	3400	chrX	22771461	intron	CR44997 +	chrX	22773161	intron	CR44997 +	chrX	22774861	intron	CR44997 +	chrX_17_22770001	chrX_22770001	RAL-382
4174	chrX	22987065	22987126	chrX	22989774	22989805	Burdock	28	2708	4.5	12.5	8.5	2.9	2740	chrX	22987065	intron,intron	stnA -,stnB -	chrX	22988435	intron,intron	stnA -,stnB -	chrX	22989805	intron,intron	stnA -,stnB -	chrX_28_22985001	chrX_22985001	RAL-382
4176	chrX	22996271	22996332	chrX	23003553	23003614	roo	27	7281	7.5	11.5	9.5	2.6	7343	chrX	22996271	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003614	intron,intron	stnA -,stnB -	chrX_27_22995001	chrX_22995001	RAL-382