SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47458	47463	chr2L	52563	52568	jockey	6	5105	7.0	5.0	6.0	0.9	5110	chr2L	47458	intron	Cda5 -	chr2L	50013	intron	Cda5 -	chr2L	52568	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-381
2	chr2L	47475	47489	chr2L	52561	52594	jockey	6	5101	6.5	5.0	5.8	0.9	5119	chr2L	47475	intron	Cda5 -	chr2L	50034	intron	Cda5 -	chr2L	52594	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-381
12	chr2L	347886	347916	chr2L	355385	355410	blood	6	7497	2.5	2.5	2.5	1.7	7524	chr2L	347886	3` UTR	Plc21C +	chr2L	351648	intron	Plc21C +	chr2L	355410	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-381
19	chr2L	686916	686945	chr2L	695956	695979	roo	8	9039	2.5	3.5	3.0	2.0	9063	chr2L	686916	intron	ds -	chr2L	691448	intron	ds -	chr2L	695979	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-381
22	chr2L	770470	770477	chr2L	772251	772258	Bari1	6	1781	6.0	5.5	5.8	0.9	1788	chr2L	770470	intergenic	not near genes	chr2L	771364	intergenic	not near genes	chr2L	772258	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-381
23	chr2L	770478	770491	chr2L	772246	772272	Bari1	6	1777	4.0	4.0	4.0	1.2	1794	chr2L	770478	intergenic	not near genes	chr2L	771375	intergenic	not near genes	chr2L	772272	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-381
31	chr2L	976877	976907	chr2L	984513	984543	roo	9	7636	2.5	1.0	1.8	3.2	7666	chr2L	976877	intergenic	not near genes	chr2L	980710	intergenic	not near genes	chr2L	984543	intergenic	not near genes	chr2L_9_980001	chr2L_980001	RAL-381
37	chr2L	1220130	1220160	chr2L	1227596	1227626	blood	11	7466	5.5	1.0	3.2	2.6	7496	chr2L	1220130	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227626	intron	CG42329 +	chr2L_11_1220001	chr2L_1220001	RAL-381
45	chr2L	1570684	1570718	chr2L	1573556	1573590	F-element	11	2872	3.5	2.5	3.0	2.8	2906	chr2L	1570684	intron	haf +	chr2L	1572137	intron	haf +	chr2L	1573590	intron	haf +	chr2L_11_1570001	chr2L_1570001	RAL-381
48	chr2L	1678979	1679010	chr2L	1686442	1686475	blood	6	7464	0.5	4.0	2.2	1.9	7496	chr2L	1678979	intron	chinmo +	chr2L	1682727	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	RAL-381
49	chr2L	1711354	1711387	chr2L	1711678	1711711	mdg3	17	322	3.0	6.5	4.8	2.9	357	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711711	3` UTR	frtz -	chr2L_17_1710001	chr2L_1710001	RAL-381
59	chr2L	2100378	2100407	chr2L	2109526	2109558	roo	11	9150	5.5	3.5	4.5	2.0	9180	chr2L	2100378	intron	dpr3 -	chr2L	2104968	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_11_2100001	chr2L_2100001	RAL-381
60	chr2L	2112121	2112144	chr2L	2119783	2119806	opus	8	7659	6.5	7.5	7.0	1.0	7685	chr2L	2112121	intergenic	not near genes	chr2L	2115964	intergenic	not near genes	chr2L	2119806	intergenic	not near genes	chr2L_8_2115001	chr2L_2115001	RAL-381
64	chr2L	2294043	2294073	chr2L	2299244	2299278	copia	10	5202	0.5	3.0	1.8	3.6	5235	chr2L	2294043	intergenic	not near genes	chr2L	2296660	intergenic	not near genes	chr2L	2299278	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	RAL-381
73	chr2L	2565567	2565569	chr2L	2571631	2571637	297	4	6067	5.0	2.0	3.5	0.9	6070	chr2L	2565567	exon	Cyp309a2 -	chr2L	2568602	intron	Cyp309a2 -	chr2L	2571637	intron	Cyp309a2 -	chr2L_4_2565001	chr2L_2565001	RAL-381
76	chr2L	2661197	2661234	chr2L	2663034	2663070	I-element	15	1829	1.0	2.0	1.5	6.0	1873	chr2L	2661197	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_15_2660001	chr2L_2660001	RAL-381
79	chr2L	2772612	2772625	chr2L	2779194	2779207	297	5	6582	3.5	3.5	3.5	1.1	6595	chr2L	2772612	3` UTR	Syt1 -	chr2L	2775910	intron	Syt1 -	chr2L	2779207	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-381
83	chr2L	3073015	3073029	chr2L	3078238	3078252	copia	5	5223	3.5	5.5	4.5	0.9	5237	chr2L	3073015	intron	toc -	chr2L	3075634	intron	toc -	chr2L	3078252	intron	toc -	chr2L_5_3075001	chr2L_3075001	RAL-381
84	chr2L	3073032	3073056	chr2L	3078235	3078259	copia	6	5206	1.0	4.5	2.8	1.6	5227	chr2L	3073032	intron	toc -	chr2L	3075646	intron	toc -	chr2L	3078259	intron	toc -	chr2L_6_3075001	chr2L_3075001	RAL-381
90	chr2L	3251501	3251523	chr2L	3259066	3259088	springer	8	7564	7.0	6.0	6.5	1.1	7587	chr2L	3251501	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259088	intergenic	not near genes	chr2L_8_3255001	chr2L_3255001	RAL-381
102	chr2L	3649786	3649819	chr2L	3654989	3655022	copia	8	5202	2.0	3.0	2.5	2.3	5236	chr2L	3649786	intron	for -	chr2L	3652404	intron	for -	chr2L	3655022	intron	for -	chr2L_8_3650001	chr2L_3650001	RAL-381
116	chr2L	4066056	4066062	chr2L	4068862	4068887	Juan	6	2821	2.5	5.0	3.8	1.2	2831	chr2L	4066056	intron	ed +	chr2L	4067472	intron	ed +	chr2L	4068887	intron	ed +	chr2L_6_4065001	chr2L_4065001	RAL-381
121	chr2L	4181293	4181305	chr2L	4183926	4183937	Burdock	7	2632	2.0	5.0	3.5	1.6	2644	chr2L	4181293	intergenic	not near genes	chr2L	4182615	intergenic	not near genes	chr2L	4183937	intergenic	not near genes	chr2L_7_4180001	chr2L_4180001	RAL-381
131	chr2L	4601706	4601727	chr2L	4609147	4609168	mdg1	9	7440	6.5	7.0	6.8	1.2	7462	chr2L	4601706	intron	dp -	chr2L	4605437	intron	dp -	chr2L	4609168	intron	dp -	chr2L_9_4605001	chr2L_4605001	RAL-381
132	chr2L	4601728	4601733	chr2L	4609146	4609174	mdg1	4	7435	4.5	7.0	5.8	0.6	7446	chr2L	4601728	intron	dp -	chr2L	4605451	intron	dp -	chr2L	4609174	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-381
145	chr2L	4953512	4953539	chr2L	4953753	4953780	pogo	9	241	5.0	1.0	3.0	2.2	268	chr2L	4953512	intergenic	Jon25Bii -	chr2L	4953646	intergenic	not near genes	chr2L	4953780	intergenic	Jon25Bi -	chr2L_9_4950001	chr2L_4950001	RAL-381
163	chr2L	5827713	5827741	chr2L	5836720	5836749	roo	11	9008	4.5	4.0	4.2	2.1	9036	chr2L	5827713	intron	TrissinR +	chr2L	5832231	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_11_5830001	chr2L_5830001	RAL-381
175	chr2L	6363148	6363183	chr2L	6366070	6366105	Burdock	15	2918	2.0	5.0	3.5	3.3	2957	chr2L	6363148	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366105	intergenic	not near genes	chr2L_15_6360001	chr2L_6360001	RAL-381
180	chr2L	6426857	6426888	chr2L	6445117	6445148	roo	12	18259	2.5	6.5	4.5	2.2	18291	chr2L	6426857	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445148	exon	CG9527 -	chr2L_12_6435001	chr2L_6435001	RAL-381
196	chr2L	7343323	7343359	chr2L	7350439	7350474	roo	6	7115	3.0	3.5	3.2	1.4	7151	chr2L	7343323	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_6_7345001	chr2L_7345001	RAL-381
203	chr2L	7579201	7579228	chr2L	7579392	7579419	BS	6	190	1.0	1.0	1.0	3.0	218	chr2L	7579201	intergenic	RapGAP1 -	chr2L	7579310	intergenic	RapGAP1 -	chr2L	7579419	intergenic	RapGAP1 -	chr2L_6_7575001	chr2L_7575001	RAL-381
206	chr2L	7977091	7977113	chr2L	7984067	7984089	297	7	6976	3.0	5.0	4.0	1.4	6998	chr2L	7977091	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984089	intron,5` UTR	Snoo -,CG7231 +	chr2L_7_7980001	chr2L_7980001	RAL-381
207	chr2L	8013614	8013637	chr2L	8018819	8018838	copia	6	5204	4.5	0.0	2.2	1.9	5224	chr2L	8013614	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_6_8015001	chr2L_8015001	RAL-381
215	chr2L	8452431	8452445	chr2L	8461602	8461616	roo	5	9170	1.5	2.5	2.0	1.7	9185	chr2L	8452431	intron	fu12 -	chr2L	8457024	intron	fu12 -	chr2L	8461616	intron	fu12 -	chr2L_5_8455001	chr2L_8455001	RAL-381
222	chr2L	8594466	8594498	chr2L	8601520	8601552	297	4	7049	2.0	0.0	1.0	2.0	7086	chr2L	8594466	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598009	intron	Sema-1a +	chr2L	8601552	intron	Sema-1a +	chr2L_4_8595001	chr2L_8595001	RAL-381
226	chr2L	8723116	8723127	chr2L	8731493	8731502	Tirant	8	8377	4.5	3.0	3.8	1.7	8386	chr2L	8723116	intron	raw -	chr2L	8727309	intron	raw -	chr2L	8731502	intron	raw -	chr2L_8_8725001	chr2L_8725001	RAL-381
227	chr2L	8723128	8723147	chr2L	8731490	8731524	Tirant	6	8374	4.0	3.0	3.5	1.3	8396	chr2L	8723128	intron	raw -	chr2L	8727326	intron	raw -	chr2L	8731524	intron	raw -	chr2L_6_8725001	chr2L_8725001	RAL-381
232	chr2L	9000282	9000310	chr2L	9007792	9007820	roo	4	7510	4.5	1.0	2.8	1.1	7538	chr2L	9000282	intergenic	Try29F +	chr2L	9004051	intergenic	not near genes	chr2L	9007820	intergenic	not near genes	chr2L_4_9000001	chr2L_9000001	RAL-381
240	chr2L	9217976	9217995	chr2L	9222760	9222782	Doc	5	4786	1.5	2.5	2.0	1.7	4806	chr2L	9217976	intron	tai +	chr2L	9220379	intron	tai +	chr2L	9222782	intron	tai +	chr2L_5_9220001	chr2L_9220001	RAL-381
247	chr2L	9393499	9393531	chr2L	9396466	9396498	jockey	6	2965	1.5	3.5	2.5	1.7	2999	chr2L	9393499	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396498	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-381
261	chr2L	9973725	9973759	chr2L	9980843	9980878	HMS-Beagle	15	7117	2.5	8.0	5.2	2.4	7153	chr2L	9973725	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980878	intergenic	not near genes	chr2L_15_9975001	chr2L_9975001	RAL-381
266	chr2L	10156327	10156352	chr2L	10163796	10163816	blood	9	7469	4.5	8.5	6.5	1.2	7489	chr2L	10156327	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163816	intron	CG44153 -	chr2L_9_10160001	chr2L_10160001	RAL-381
272	chr2L	10592840	10592871	chr2L	10600502	10600533	opus	5	7662	1.5	1.0	1.2	2.3	7693	chr2L	10592840	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600533	intron	Trim9 +	chr2L_5_10595001	chr2L_10595001	RAL-381
275	chr2L	10862841	10862870	chr2L	10864454	10864483	Rt1c	17	1613	1.5	4.5	3.0	4.2	1642	chr2L	10862841	3` UTR	CR43807 -	chr2L	10863662	intron	CR43807 -	chr2L	10864483	3` UTR	CR43807 -	chr2L_17_10860001	chr2L_10860001	RAL-381
277	chr2L	10946950	10946973	chr2L	10956165	10956188	roo	11	9214	4.5	10.5	7.5	1.3	9238	chr2L	10946950	intron	dpr2 -	chr2L	10951569	intron	dpr2 -	chr2L	10956188	intron	dpr2 -	chr2L_11_10950001	chr2L_10950001	RAL-381
288	chr2L	11563635	11563667	chr2L	11568839	11568870	copia	12	5202	3.0	3.0	3.0	3.0	5235	chr2L	11563635	intergenic	not near genes	chr2L	11566252	intergenic	not near genes	chr2L	11568870	intergenic	not near genes	chr2L_12_11565001	chr2L_11565001	RAL-381
289	chr2L	11614078	11614086	chr2L	11615552	11615574	hopper2	4	1484	2.5	4.0	3.2	1.0	1496	chr2L	11614078	intron	kek2 +	chr2L	11614826	intron	kek2 +	chr2L	11615574	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	RAL-381
293	chr2L	11713505	11713540	chr2L	11720973	11721007	blood	13	7467	2.0	3.0	2.5	3.7	7502	chr2L	11713505	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721007	intergenic	CR44143 +	chr2L_13_11715001	chr2L_11715001	RAL-381
298	chr2L	12067329	12067357	chr2L	12074381	12074409	297	7	7052	1.5	2.0	1.8	2.5	7080	chr2L	12067329	intergenic	not near genes	chr2L	12070869	intergenic	not near genes	chr2L	12074409	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	RAL-381
312	chr2L	12558321	12558349	chr2L	12565450	12565478	HMS-Beagle	8	7126	2.5	2.0	2.2	2.5	7157	chr2L	12558321	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565478	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	RAL-381
315	chr2L	12728935	12728944	chr2L	12729177	12729186	pogo	4	242	4.5	6.0	5.2	0.6	251	chr2L	12728935	intron	MRP +	chr2L	12729060	intron	MRP +	chr2L	12729186	exon	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-381
316	chr2L	12731063	12731086	chr2L	12735829	12735853	F-element	8	4766	4.5	6.0	5.2	1.3	4790	chr2L	12731063	intron	MRP +	chr2L	12733458	intron	MRP +	chr2L	12735853	intron	MRP +	chr2L_8_12730001	chr2L_12730001	RAL-381
318	chr2L	12739175	12739198	chr2L	12743952	12743979	Doc	11	4779	3.5	6.5	5.0	1.8	4804	chr2L	12739175	exon	MRP +	chr2L	12741577	intron	MRP +	chr2L	12743979	exon	MRP +	chr2L_11_12740001	chr2L_12740001	RAL-381
319	chr2L	12781802	12781812	chr2L	12789245	12789251	Quasimodo	6	7441	7.5	4.5	6.0	0.9	7449	chr2L	12781802	intergenic	not near genes	chr2L	12785526	intergenic	not near genes	chr2L	12789251	intergenic	not near genes	chr2L_6_12785001	chr2L_12785001	RAL-381
320	chr2L	12861696	12861719	chr2L	12863163	12863186	hobo	8	1466	3.0	2.5	2.8	2.1	1490	chr2L	12861696	intergenic	not near genes	chr2L	12862441	intergenic	not near genes	chr2L	12863186	intergenic	not near genes	chr2L_8_12860001	chr2L_12860001	RAL-381
322	chr2L	12894020	12894054	chr2L	12895487	12895516	hobo	6	1466	4.5	9.0	6.8	0.8	1496	chr2L	12894020	intergenic	not near genes	chr2L	12894768	intergenic	not near genes	chr2L	12895516	intergenic	not near genes	chr2L_6_12890001	chr2L_12890001	RAL-381
323	chr2L	12933849	12933873	chr2L	12941316	12941340	blood	18	7467	6.0	5.5	5.8	2.6	7491	chr2L	12933849	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941340	intergenic	not near genes	chr2L_18_12935001	chr2L_12935001	RAL-381
324	chr2L	13036247	13036265	chr2L	13036489	13036507	X-element	4	242	3.0	0.5	1.8	1.4	260	chr2L	13036247	intron	CG9932 -	chr2L	13036377	intron	CG9932 -	chr2L	13036507	intron	CG9932 -	chr2L_4_13035001	chr2L_13035001	RAL-381
331	chr2L	13405646	13405678	chr2L	13410443	13410475	Doc	12	4795	6.5	3.5	5.0	2.0	4829	chr2L	13405646	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410475	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-381
333	chr2L	13449472	13449489	chr2L	13456908	13456925	Quasimodo	5	7436	1.5	4.0	2.8	1.3	7453	chr2L	13449472	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456925	intron	CG42784 +	chr2L_5_13450001	chr2L_13450001	RAL-381
334	chr2L	13481459	13481474	chr2L	13482061	13482081	jockey	7	605	7.0	8.5	7.8	0.8	622	chr2L	13481459	intron	CG42784 +	chr2L	13481770	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_7_13480001	chr2L_13480001	RAL-381
341	chr2L	13761819	13761831	chr2L	13762911	13762942	Doc	6	1108	5.5	3.5	4.5	1.1	1123	chr2L	13761819	intron	TM9SF4 +	chr2L	13762380	intron	TM9SF4 +	chr2L	13762942	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-381
342	chr2L	13853096	13853116	chr2L	13862246	13862266	roo	8	9150	7.0	2.5	4.8	1.4	9170	chr2L	13853096	intron	CenG1A +	chr2L	13857681	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_8_13855001	chr2L_13855001	RAL-381
357	chr2L	14803879	14803913	chr2L	14809082	14809116	copia	15	5202	3.5	4.5	4.0	3.0	5237	chr2L	14803879	intergenic	not near genes	chr2L	14806498	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_15_14805001	chr2L_14805001	RAL-381
358	chr2L	14889952	14889987	chr2L	14890376	14890412	jockey	14	424	5.0	4.5	4.8	2.4	460	chr2L	14889952	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890412	intergenic	not near genes	chr2L_14_14890001	chr2L_14890001	RAL-381
368	chr2L	15446066	15446084	chr2L	15453521	15453553	blood	5	7464	3.0	2.0	2.5	1.4	7487	chr2L	15446066	intergenic	not near genes	chr2L	15449810	intergenic	not near genes	chr2L	15453553	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-381
371	chr2L	15586408	15586433	chr2L	15593460	15593476	297	7	7051	4.5	2.5	3.5	1.6	7068	chr2L	15586408	intergenic	not near genes	chr2L	15589942	intergenic	not near genes	chr2L	15593476	intergenic	not near genes	chr2L_7_15585001	chr2L_15585001	RAL-381
374	chr2L	15956025	15956056	chr2L	15957492	15957523	hobo	8	1466	3.5	2.0	2.8	2.1	1498	chr2L	15956025	intron	beat-Ib -	chr2L	15956774	intron	beat-Ib -	chr2L	15957523	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-381
379	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	20	145889	25.0	32.0	28.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_20_16140001	chr2L_16140001	RAL-381
381	chr2L	16141166	16141196	chr2L	16146373	16146403	copia	7	5206	3.0	2.0	2.5	2.0	5237	chr2L	16141166	intergenic	not near genes	chr2L	16143784	intergenic	not near genes	chr2L	16146403	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-381
384	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	17	145889	25.0	32.0	28.5	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_17_16140001	chr2L_16140001	RAL-381
389	chr2L	16280256	16280287	chr2L	16281424	16281452	1360	6	1165	4.0	2.5	3.2	1.4	1196	chr2L	16280256	intron	crp -	chr2L	16280854	intron	crp -	chr2L	16281452	intron	crp -	chr2L_6_16280001	chr2L_16280001	RAL-381
395	chr2L	16511963	16511992	chr2L	16519076	16519106	HMS-Beagle	6	7114	0.5	2.0	1.2	2.7	7143	chr2L	16511963	intron	CG5953 -	chr2L	16515534	intron	CG5953 -	chr2L	16519106	intron	CG5953 -	chr2L_6_16515001	chr2L_16515001	RAL-381
405	chr2L	16958109	16958136	chr2L	16962897	16962924	Doc	7	4788	2.0	4.0	3.0	1.8	4815	chr2L	16958109	intergenic	not near genes	chr2L	16960516	intergenic	not near genes	chr2L	16962924	intergenic	not near genes	chr2L_7_16960001	chr2L_16960001	RAL-381
415	chr2L	17273189	17273229	chr2L	17277972	17278009	F-element	17	4779	5.0	4.0	4.5	3.1	4820	chr2L	17273189	intergenic	not near genes	chr2L	17275599	intergenic	not near genes	chr2L	17278009	intergenic	not near genes	chr2L_17_17275001	chr2L_17275001	RAL-381
417	chr2L	17335549	17335578	chr2L	17336715	17336743	1360	6	1166	7.5	14.0	10.8	0.5	1194	chr2L	17335549	intergenic	not near genes	chr2L	17336146	intergenic	not near genes	chr2L	17336743	intergenic	not near genes	chr2L_6_17335001	chr2L_17335001	RAL-381
424	chr2L	17727875	17727881	chr2L	17729343	17729347	hobo	5	1467	3.0	5.0	4.0	1.0	1472	chr2L	17727875	intron	CadN -	chr2L	17728611	intron	CadN -	chr2L	17729347	intron	CadN -	chr2L_5_17725001	chr2L_17725001	RAL-381
427	chr2L	17819928	17819955	chr2L	17825124	17825158	copia	6	5202	1.0	6.0	3.5	1.3	5230	chr2L	17819928	intron	CadN2 -	chr2L	17822543	intron	CadN2 -	chr2L	17825158	intron	CadN2 -	chr2L_6_17820001	chr2L_17820001	RAL-381
431	chr2L	17911959	17911983	chr2L	17914137	17914161	pogo	5	2177	6.5	4.5	5.5	0.8	2202	chr2L	17911959	intergenic	not near genes	chr2L	17913060	intergenic	not near genes	chr2L	17914161	intergenic	CG43271 -	chr2L_5_17910001	chr2L_17910001	RAL-381
432	chr2L	17951944	17951972	chr2L	17953411	17953439	hobo	7	1466	6.0	4.5	5.2	1.1	1495	chr2L	17951944	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953439	intergenic	not near genes	chr2L_7_17950001	chr2L_17950001	RAL-381
435	chr2L	18051879	18051888	chr2L	18061026	18061035	roo	4	9147	7.5	2.5	5.0	0.7	9156	chr2L	18051879	intron	rdo +	chr2L	18056457	intron	rdo +	chr2L	18061035	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-381
436	chr2L	18051897	18051909	chr2L	18061020	18061048	roo	4	9139	3.0	2.0	2.5	1.1	9151	chr2L	18051897	intron	rdo +	chr2L	18056472	intron	rdo +	chr2L	18061048	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-381
445	chr2L	18408031	18408056	chr2L	18412810	18412840	Doc	10	4783	4.5	3.0	3.8	2.1	4809	chr2L	18408031	intergenic	not near genes	chr2L	18410436	intergenic	not near genes	chr2L	18412840	intergenic	not near genes	chr2L_10_18410001	chr2L_18410001	RAL-381
456	chr2L	19147368	19147403	chr2L	19154403	19154437	297	12	7034	5.0	3.5	4.2	2.3	7069	chr2L	19147368	intron	brat +	chr2L	19150902	intron	brat +	chr2L	19154437	intron	brat +	chr2L_12_19150001	chr2L_19150001	RAL-381
460	chr2L	19345019	19345047	chr2L	19357228	19357256	blood	18	12209	4.0	4.0	4.0	3.6	12237	chr2L	19345019	intron	dnt -	chr2L	19351138	intron	dnt -	chr2L	19357256	intron	dnt -	chr2L_18_19350001	chr2L_19350001	RAL-381
474	chr2L	19620096	19620131	chr2L	19621079	19621120	jockey	17	982	7.5	5.5	6.5	2.3	1024	chr2L	19620096	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621120	intron	Lar +	chr2L_17_19620001	chr2L_19620001	RAL-381
477	chr2L	19652570	19652604	chr2L	19674006	19674040	opus	9	21436	1.0	0.5	0.8	5.0	21470	chr2L	19652570	intron	Lar +	chr2L	19663305	intron	Lar +	chr2L	19674040	intron	Lar +	chr2L_9_19660001	chr2L_19660001	RAL-381
479	chr2L	19703540	19703569	chr2L	19712676	19712705	roo	8	9136	4.0	6.0	5.0	1.3	9165	chr2L	19703540	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_8_19705001	chr2L_19705001	RAL-381
480	chr2L	19737353	19737375	chr2L	19740822	19740844	1360	5	3467	15.0	11.0	13.0	0.4	3491	chr2L	19737353	intergenic	Nf-YB +	chr2L	19739098	intergenic	not near genes	chr2L	19740844	intergenic	not near genes	chr2L_5_19735001	chr2L_19735001	RAL-381
481	chr2L	19762817	19762837	chr2L	19763058	19763079	pogo	6	242	3.5	4.0	3.8	1.2	262	chr2L	19762817	intron	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763079	intron	fbp -	chr2L_6_19760001	chr2L_19760001	RAL-381
485	chr2L	20005874	20005900	chr2L	20010948	20010976	flea	7	5075	1.5	3.0	2.2	2.2	5102	chr2L	20005874	intron	CG43861 -	chr2L	20008425	intron	CG43861 -	chr2L	20010976	intron	CG43861 -	chr2L_7_20005001	chr2L_20005001	RAL-381
490	chr2L	20303161	20303188	chr2L	20310629	20310641	blood	7	7466	0.0	0.5	0.2	5.8	7480	chr2L	20303161	intergenic	not near genes	chr2L	20306901	intergenic	not near genes	chr2L	20310641	intergenic	not near genes	chr2L_7_20305001	chr2L_20305001	RAL-381
496	chr2L	20568660	20568684	chr2L	20569050	20569074	X-element	10	390	2.0	2.0	2.0	3.3	414	chr2L	20568660	intron	CR45347 +	chr2L	20568867	intron	CR45347 +	chr2L	20569074	intron	CR45347 +	chr2L_10_20565001	chr2L_20565001	RAL-381
498	chr2L	20576217	20576251	chr2L	20583685	20583717	blood	12	7467	3.5	4.5	4.0	2.4	7500	chr2L	20576217	intergenic	CR45347 +	chr2L	20579967	intergenic	not near genes	chr2L	20583717	3` UTR	CR44909 -	chr2L_12_20575001	chr2L_20575001	RAL-381
508	chr2L	20891536	20891543	chr2L	20896637	20896644	jockey	4	5101	3.5	4.5	4.0	0.8	5108	chr2L	20891536	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896644	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	RAL-381
509	chr2L	20901478	20901488	chr2L	20902642	20902652	1360	6	1164	1.0	9.0	5.0	1.0	1174	chr2L	20901478	intron,intron	CG43739 -,sky -	chr2L	20902065	intron,intron	CG43739 -,sky -	chr2L	20902652	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	RAL-381
511	chr2L	20976672	20976682	chr2L	20982480	20982490	X-element	5	5808	1.0	7.0	4.0	1.0	5818	chr2L	20976672	intron	CG42238 -	chr2L	20979581	intron	CG42238 -	chr2L	20982490	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-381
513	chr2L	21020272	21020310	chr2L	21023949	21023987	NOF	19	3675	3.5	6.5	5.0	3.2	3715	chr2L	21020272	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023987	intron	CG42238 -	chr2L_19_21020001	chr2L_21020001	RAL-381
514	chr2L	21041136	21041160	chr2L	21049397	21049421	Tirant	6	8261	3.0	6.5	4.8	1.0	8285	chr2L	21041136	intron	CG42238 -	chr2L	21045278	intron	CG42238 -	chr2L	21049421	intron	CG42238 -	chr2L_6_21045001	chr2L_21045001	RAL-381
520	chr2L	21597029	21597047	chr2L	21604771	21604791	roo	5	7744	2.5	3.0	2.8	1.3	7762	chr2L	21597029	intergenic	not near genes	chr2L	21600910	intergenic	not near genes	chr2L	21604791	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-381
525	chr2L	21981682	21981714	chr2L	21990847	21990879	roo	12	9162	3.0	4.0	3.5	2.7	9197	chr2L	21981682	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990879	exon	CG2528 -	chr2L_12_21985001	chr2L_21985001	RAL-381
529	chr2L	22679807	22679821	chr2L	22684574	22684593	F-element	6	4771	7.0	6.5	6.8	0.8	4786	chr2L	22679807	intron	CG40006 -	chr2L	22682200	intron	CG40006 -	chr2L	22684593	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-381
531	chr2L	22776425	22776444	chr2L	22778214	22778233	S-element	4	1789	0.0	1.5	0.8	2.2	1808	chr2L	22776425	intergenic	not near genes	chr2L	22777329	intergenic	not near genes	chr2L	22778233	intergenic	not near genes	chr2L_4_22775001	chr2L_22775001	RAL-381
532	chr2L	23006505	23006538	chr2L	23007181	23007214	Osvaldo	6	676	15.5	12.0	13.8	0.4	709	chr2L	23006505	intron	Cht3 -	chr2L	23006860	intron	Cht3 -	chr2L	23007214	intron	Cht3 -	chr2L_6_23005001	chr2L_23005001	RAL-381
534	chr2R	529321	529356	chr2R	537946	537981	Max-element	13	8624	3.0	3.5	3.2	3.1	8660	chr2R	529321	intron	CG40378 +	chr2R	533651	intron	CG40378 +	chr2R	537981	intron	CG40378 +	chr2R_13_530001	chr2R_530001	RAL-381
535	chr2R	1082366	1082382	chr2R	1087142	1087158	Doc	9	4776	8.0	5.0	6.5	1.2	4792	chr2R	1082366	intron	rl +	chr2R	1084762	intron	rl +	chr2R	1087158	intron	rl +	chr2R_9_1080001	chr2R_1080001	RAL-381
538	chr2R	2498985	2499016	chr2R	2508132	2508163	roo	7	9146	3.0	2.5	2.8	1.8	9178	chr2R	2498985	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508163	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RAL-381
540	chr2R	3144093	3144107	chr2R	3393366	3393384	Doc	8	249277	12.5	11.5	12.0	0.6	249291	chr2R	3144093	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393384	intergenic	not near genes	chr2R_8_3265001	chr2R_3265001	RAL-381
548	chr2R	4622950	4622988	chr2R	4624109	4624147	1360	17	1157	2.5	4.0	3.2	4.0	1197	chr2R	4622950	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_17_4620001	chr2R_4620001	RAL-381
549	chr2R	4624644	4624656	chr2R	4626548	4626561	Bica	7	1904	22.0	18.5	20.2	0.3	1917	chr2R	4624644	intergenic	not near genes	chr2R	4625602	intergenic	not near genes	chr2R	4626561	intergenic	not near genes	chr2R_7_4625001	chr2R_4625001	RAL-381
552	chr2R	4750343	4750374	chr2R	4751500	4751509	1360	6	1152	0.5	3.5	2.0	2.0	1166	chr2R	4750343	intron	conu +	chr2R	4750926	intron	conu +	chr2R	4751509	intron	conu +	chr2R_6_4750001	chr2R_4750001	RAL-381
566	chr2R	5543199	5543213	chr2R	5547283	5547297	invader1	4	4084	0.5	2.5	1.5	1.6	4098	chr2R	5543199	intron	CG30438 +	chr2R	5545248	intron	CG30438 +	chr2R	5547297	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	RAL-381
571	chr2R	5869277	5869304	chr2R	5874353	5874380	flea	9	5074	3.5	4.0	3.8	1.9	5103	chr2R	5869277	intergenic	not near genes	chr2R	5871828	intergenic	not near genes	chr2R	5874380	intergenic	not near genes	chr2R_9_5870001	chr2R_5870001	RAL-381
577	chr2R	6096717	6096745	chr2R	6101912	6101942	BS	9	5194	7.0	4.5	5.8	1.3	5225	chr2R	6096717	intron	EcR -	chr2R	6099330	intron	EcR -	chr2R	6101942	intron	EcR -	chr2R_9_6095001	chr2R_6095001	RAL-381
582	chr2R	6579778	6579804	chr2R	6584864	6584891	flea	4	5086	0.5	1.0	0.8	2.2	5113	chr2R	6579778	intron	jing +	chr2R	6582334	intron	jing +	chr2R	6584891	intron	jing +	chr2R_4_6580001	chr2R_6580001	RAL-381
589	chr2R	6952171	6952185	chr2R	6959751	6959765	opus	4	7580	6.0	1.5	3.8	0.8	7594	chr2R	6952171	intron,intron	mim -,CheB42c -	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959765	intron,intron	mim -,CheB42c -	chr2R_4_6955001	chr2R_6955001	RAL-381
595	chr2R	7235818	7235830	chr2R	7240910	7240922	jockey	8	5091	9.0	3.0	6.0	1.1	5104	chr2R	7235818	intergenic	not near genes	chr2R	7238370	intergenic	not near genes	chr2R	7240922	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-381
596	chr2R	7235837	7235849	chr2R	7240906	7240939	jockey	8	5088	6.0	3.0	4.5	1.5	5102	chr2R	7235837	intergenic	not near genes	chr2R	7238388	intergenic	not near genes	chr2R	7240939	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-381
603	chr2R	7434899	7434905	chr2R	7439200	7439206	Juan	4	4301	2.0	6.0	4.0	0.8	4307	chr2R	7434899	intergenic	so +	chr2R	7437052	intergenic	not near genes	chr2R	7439206	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-381
607	chr2R	7608418	7608435	chr2R	7613606	7613631	I-element	7	5200	2.5	2.0	2.2	2.2	5213	chr2R	7608418	intron	CG1358 -	chr2R	7611024	intron	CG1358 -	chr2R	7613631	intron	CG1358 -	chr2R_7_7610001	chr2R_7610001	RAL-381
615	chr2R	7815688	7815698	chr2R	7822157	7822167	Burdock	5	6469	2.5	5.0	3.8	1.0	6479	chr2R	7815688	intergenic	CG1882 +	chr2R	7818928	intergenic	not near genes	chr2R	7822167	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-381
616	chr2R	7869190	7869204	chr2R	7873976	7873989	Doc	7	4785	7.0	4.5	5.8	1.0	4799	chr2R	7869190	intron	Dgk -	chr2R	7871590	intron	Dgk -	chr2R	7873989	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	RAL-381
626	chr2R	8330861	8330894	chr2R	8331347	8331380	roo	10	486	6.0	6.5	6.2	1.4	519	chr2R	8330861	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331380	intron	pdm3 +	chr2R_10_8330001	chr2R_8330001	RAL-381
628	chr2R	8398208	8398240	chr2R	8402989	8403000	Doc	7	4777	4.5	2.0	3.2	1.7	4792	chr2R	8398208	intron	CG2121 -	chr2R	8400604	intron	CG2121 -	chr2R	8403000	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-381
633	chr2R	8722770	8722794	chr2R	8723011	8723035	pogo	9	241	2.5	7.5	5.0	1.5	265	chr2R	8722770	intron	CG14767 -	chr2R	8722902	intron	CG14767 -	chr2R	8723035	intron	CG14767 -	chr2R_9_8720001	chr2R_8720001	RAL-381
634	chr2R	8777911	8777937	chr2R	8784102	8784141	diver	4	6198	1.0	1.5	1.2	1.8	6230	chr2R	8777911	intergenic	not near genes	chr2R	8781026	intergenic	not near genes	chr2R	8784141	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-381
641	chr2R	9151311	9151330	chr2R	9157781	9157800	Burdock	10	6470	3.0	4.0	3.5	2.2	6489	chr2R	9151311	3` UTR	CG30345 +	chr2R	9154556	intergenic	not near genes	chr2R	9157800	intergenic	CG8008 -	chr2R_10_9150001	chr2R_9150001	RAL-381
642	chr2R	9212693	9212723	chr2R	9213177	9213209	roo	13	484	3.0	4.0	3.5	2.9	516	chr2R	9212693	intergenic	CR45309 +	chr2R	9212951	intergenic	CR45309 +	chr2R	9213209	5` UTR	CR45309 +	chr2R_13_9210001	chr2R_9210001	RAL-381
643	chr2R	9352252	9352258	chr2R	9361397	9361408	roo	4	9149	2.0	5.5	3.8	0.8	9156	chr2R	9352252	intron	CG13954 -	chr2R	9356830	intron	CG13954 -	chr2R	9361408	intron	CG13954 -	chr2R_4_9355001	chr2R_9355001	RAL-381
649	chr2R	9726610	9726634	chr2R	9734161	9734185	17.6	5	7551	1.5	0.5	1.0	2.5	7575	chr2R	9726610	intron	sqa -	chr2R	9730398	intron	sqa -	chr2R	9734185	intron	sqa -	chr2R_5_9730001	chr2R_9730001	RAL-381
652	chr2R	9871042	9871071	chr2R	9871528	9871557	roo	8	485	5.0	5.0	5.0	1.3	515	chr2R	9871042	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871557	intron,5` UTR	cbx -,CG18446 +	chr2R_8_9870001	chr2R_9870001	RAL-381
654	chr2R	10005858	10005882	chr2R	10007012	10007034	1360	16	1158	7.0	3.5	5.2	2.6	1176	chr2R	10005858	intron	Pka-R2 -	chr2R	10006446	intron	Pka-R2 -	chr2R	10007034	intron	Pka-R2 -	chr2R_16_10005001	chr2R_10005001	RAL-381
660	chr2R	10176879	10176912	chr2R	10186046	10186079	roo	5	9166	2.0	0.0	1.0	2.5	9200	chr2R	10176879	intron	KCNQ -	chr2R	10181479	intron	KCNQ -	chr2R	10186079	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-381
677	chr2R	10585579	10585584	chr2R	10594162	10594162	Tirant	7	8582	3.0	7.5	5.2	1.1	8583	chr2R	10585579	intron	psq +	chr2R	10589870	intron	psq +	chr2R	10594162	intron	psq +	chr2R_7_10585001	chr2R_10585001	RAL-381
678	chr2R	10585586	10585591	chr2R	10594155	10594155	Tirant	4	8575	2.0	6.5	4.2	0.8	8569	chr2R	10585586	intron	psq +	chr2R	10589870	intron	psq +	chr2R	10594155	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-381
679	chr2R	10622350	10622380	chr2R	10637115	10637145	mdg1	7	14765	2.5	1.5	2.0	2.3	14795	chr2R	10622350	intron	CG11883 +	chr2R	10629748	intron	CG11883 +	chr2R	10637145	intron	CG11883 +	chr2R_7_10625001	chr2R_10625001	RAL-381
684	chr2R	10948024	10948060	chr2R	10955575	10955610	17.6	11	7548	2.5	6.0	4.2	2.1	7586	chr2R	10948024	intergenic	not near genes	chr2R	10951817	intergenic	not near genes	chr2R	10955610	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	RAL-381
688	chr2R	11009813	11009839	chr2R	11018987	11019001	roo	8	9170	3.0	4.5	3.8	1.7	9188	chr2R	11009813	intron	luna -	chr2R	11014407	intron	luna -	chr2R	11019001	intron	luna -	chr2R_8_11010001	chr2R_11010001	RAL-381
689	chr2R	11019879	11019904	chr2R	11024942	11024969	jockey	10	5062	3.0	2.5	2.8	2.6	5090	chr2R	11019879	intron	luna -	chr2R	11022424	intron	luna -	chr2R	11024969	intron	luna -	chr2R_10_11020001	chr2R_11020001	RAL-381
692	chr2R	11207815	11207843	chr2R	11208007	11208035	BS	10	192	8.0	2.0	5.0	1.7	220	chr2R	11207815	intron	shn +	chr2R	11207925	intron	shn +	chr2R	11208035	intron	shn +	chr2R_10_11205001	chr2R_11205001	RAL-381
696	chr2R	11472657	11472680	chr2R	11473854	11473875	pogo	10	1195	2.0	5.0	3.5	2.2	1218	chr2R	11472657	intergenic	not near genes	chr2R	11473266	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_10_11470001	chr2R_11470001	RAL-381
709	chr2R	12481155	12481161	chr2R	12482952	12482965	roo	4	1802	2.0	8.0	5.0	0.7	1810	chr2R	12481155	exon	Dh44-R2 +	chr2R	12482060	intron	Dh44-R2 +	chr2R	12482965	intron	Dh44-R2 +	chr2R_4_12480001	chr2R_12480001	RAL-381
711	chr2R	12501703	12501713	chr2R	12503853	12503870	Rt1c	4	2156	8.5	6.0	7.2	0.5	2167	chr2R	12501703	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503870	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-381
712	chr2R	12501714	12501719	chr2R	12503850	12503881	Rt1c	6	2150	8.5	5.5	7.0	0.8	2167	chr2R	12501714	intron	fdl -	chr2R	12502798	intron	fdl -	chr2R	12503881	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-381
714	chr2R	12789298	12789328	chr2R	12797659	12797676	roo	12	8357	2.5	1.0	1.8	4.3	8378	chr2R	12789298	intron,3` UTR	sca +,CR45137 -	chr2R	12793487	intron,intron	sca +,CR45137 -	chr2R	12797676	intron,3` UTR	sca +,CR45137 -	chr2R_12_12790001	chr2R_12790001	RAL-381
718	chr2R	13136839	13136869	chr2R	13141637	13141667	Doc	11	4797	7.0	5.0	6.0	1.6	4828	chr2R	13136839	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141667	intron	Cap-G +	chr2R_11_13135001	chr2R_13135001	RAL-381
725	chr2R	13580506	13580529	chr2R	13580848	13580879	jockey	6	348	0.5	8.5	4.5	1.1	373	chr2R	13580506	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580879	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_6_13580001	chr2R_13580001	RAL-381
730	chr2R	13728137	13728163	chr2R	13735794	13735820	opus	4	7657	1.5	0.5	1.0	2.0	7683	chr2R	13728137	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735820	intron	fas +	chr2R_4_13730001	chr2R_13730001	RAL-381
738	chr2R	14467306	14467324	chr2R	14476463	14476482	roo	10	9158	3.5	7.0	5.2	1.6	9176	chr2R	14467306	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476482	5` UTR	CR44462 +	chr2R_10_14470001	chr2R_14470001	RAL-381
751	chr2R	15004728	15004760	chr2R	15005057	15005089	jockey	10	329	1.5	6.5	4.0	2.0	361	chr2R	15004728	intergenic	not near genes	chr2R	15004908	intergenic	not near genes	chr2R	15005089	intergenic	not near genes	chr2R_10_15000001	chr2R_15000001	RAL-381
752	chr2R	15015464	15015490	chr2R	15022888	15022914	mdg1	8	7423	2.5	0.5	1.5	3.2	7450	chr2R	15015464	intron	hbs +	chr2R	15019189	intron	hbs +	chr2R	15022914	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-381
754	chr2R	15119332	15119340	chr2R	15127813	15127818	Tirant	4	8480	7.0	6.0	6.5	0.5	8486	chr2R	15119332	intron	chn +	chr2R	15123575	intron	chn +	chr2R	15127818	intron	chn +	chr2R_4_15120001	chr2R_15120001	RAL-381
778	chr2R	17147239	17147277	chr2R	17152270	17152289	jockey	14	5027	3.5	2.5	3.0	3.5	5050	chr2R	17147239	intergenic	not near genes	chr2R	17149764	intergenic	not near genes	chr2R	17152289	intergenic	not near genes	chr2R_14_17145001	chr2R_17145001	RAL-381
779	chr2R	17176374	17176385	chr2R	17182548	17182574	diver	6	6187	1.0	1.0	1.0	3.0	6200	chr2R	17176374	intergenic	not near genes	chr2R	17179474	intergenic	not near genes	chr2R	17182574	intergenic	not near genes	chr2R_6_17175001	chr2R_17175001	RAL-381
781	chr2R	17236509	17236542	chr2R	17241711	17241738	copia	16	5203	2.0	3.0	2.5	4.6	5229	chr2R	17236509	intron	mbl +	chr2R	17239124	intron	mbl +	chr2R	17241738	intron	mbl +	chr2R_16_17235001	chr2R_17235001	RAL-381
785	chr2R	17485917	17485937	chr2R	17490679	17490699	F-element	5	4762	1.0	0.0	0.5	3.3	4782	chr2R	17485917	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488308	intron	NT5E-2 +	chr2R	17490699	intron	NT5E-2 +	chr2R_5_17485001	chr2R_17485001	RAL-381
790	chr2R	17784024	17784057	chr2R	17784265	17784298	pogo	18	238	4.5	6.5	5.5	2.8	274	chr2R	17784024	intergenic	mir-31a -	chr2R	17784161	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_18_17780001	chr2R_17780001	RAL-381
804	chr2R	18358387	18358422	chr2R	18372599	18372634	roo	12	14211	2.5	3.0	2.8	3.2	14247	chr2R	18358387	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_12_18365001	chr2R_18365001	RAL-381
806	chr2R	18487848	18487852	chr2R	18495317	18495322	blood	4	7470	0.0	10.0	5.0	0.7	7474	chr2R	18487848	intron	CG30116 -	chr2R	18491585	intron	CG30116 -	chr2R	18495322	intron	CG30116 -	chr2R_4_18490001	chr2R_18490001	RAL-381
808	chr2R	18575813	18575831	chr2R	18581983	18582019	3S18	7	6182	1.5	4.5	3.0	1.8	6206	chr2R	18575813	intron	GEFmeso -	chr2R	18578916	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_7_18575001	chr2R_18575001	RAL-381
809	chr2R	18590880	18590901	chr2R	18600032	18600053	roo	10	9149	4.5	8.5	6.5	1.3	9173	chr2R	18590880	intron	GEFmeso -	chr2R	18595466	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	RAL-381
829	chr2R	19776601	19776629	chr2R	19779924	19779952	jockey	10	3323	2.0	4.0	3.0	2.5	3351	chr2R	19776601	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_10_19775001	chr2R_19775001	RAL-381
830	chr2R	19914844	19914875	chr2R	19922256	19922287	mdg1	7	7408	3.0	2.5	2.8	1.8	7443	chr2R	19914844	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922287	intergenic	not near genes	chr2R_7_19915001	chr2R_19915001	RAL-381
832	chr2R	19957434	19957457	chr2R	19962636	19962659	copia	9	5199	2.5	3.5	3.0	2.2	5225	chr2R	19957434	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962659	intergenic	not near genes	chr2R_9_19960001	chr2R_19960001	RAL-381
839	chr2R	20739443	20739471	chr2R	20744211	20744239	F-element	12	4766	2.0	9.5	5.8	1.8	4796	chr2R	20739443	intron	dpr +	chr2R	20741841	intron	dpr +	chr2R	20744239	intron	dpr +	chr2R_12_20740001	chr2R_20740001	RAL-381
840	chr2R	20783323	20783333	chr2R	20788095	20788105	F-element	4	4772	2.5	10.0	6.2	0.6	4782	chr2R	20783323	intergenic	not near genes	chr2R	20785714	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-381
848	chr2R	21151133	21151137	chr2R	21153766	21153770	opus	4	2633	0.5	0.5	0.5	2.7	2637	chr2R	21151133	intron	CG30389 -	chr2R	21152452	intron	CG30389 -	chr2R	21153770	intron	CG30389 -	chr2R_4_21150001	chr2R_21150001	RAL-381
854	chr2R	21738278	21738311	chr2R	21747437	21747439	roo	10	9152	4.0	2.5	3.2	2.4	9161	chr2R	21738278	intergenic	not near genes	chr2R	21742858	intergenic	not near genes	chr2R	21747439	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	RAL-381
855	chr2R	21753085	21753117	chr2R	21753570	21753602	roo	17	485	7.0	4.5	5.8	2.5	517	chr2R	21753085	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753602	intergenic	not near genes	chr2R_17_21750001	chr2R_21750001	RAL-381
873	chr2R	22349707	22349720	chr2R	22351490	22351504	jockey	7	1783	6.5	7.5	7.0	0.9	1797	chr2R	22349707	intron	Liprin-gamma -	chr2R	22350606	intron	Liprin-gamma -	chr2R	22351504	intron	Liprin-gamma -	chr2R_7_22350001	chr2R_22350001	RAL-381
874	chr2R	22360383	22360404	chr2R	22360816	22360828	jockey	5	431	5.0	4.5	4.8	0.9	445	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-381
879	chr2R	22465317	22465344	chr2R	22465516	22465543	BS	7	199	4.0	1.0	2.5	2.0	226	chr2R	22465317	intron	CG10384 +	chr2R	22465430	intron	CG10384 +	chr2R	22465543	intron	CG10384 +	chr2R_7_22465001	chr2R_22465001	RAL-381
880	chr2R	22525748	22525783	chr2R	22529302	22529338	jockey	15	3554	2.5	4.0	3.2	3.6	3590	chr2R	22525748	intron	px -	chr2R	22527543	intron	px -	chr2R	22529338	intron	px -	chr2R_15_22525001	chr2R_22525001	RAL-381
885	chr2R	22774960	22775002	chr2R	22775379	22775419	jockey	18	418	3.5	4.0	3.8	3.8	459	chr2R	22774960	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775419	intron	CG42260 -	chr2R_18_22775001	chr2R_22775001	RAL-381
898	chr2R	23402608	23402642	chr2R	23407684	23407719	flea	5	5076	0.5	2.0	1.2	2.3	5111	chr2R	23402608	intergenic	CG3520 -	chr2R	23405164	intergenic	not near genes	chr2R	23407719	intergenic	not near genes	chr2R_5_23405001	chr2R_23405001	RAL-381
902	chr2R	23529572	23529606	chr2R	23537148	23537165	412	8	7568	4.0	6.5	5.2	1.3	7593	chr2R	23529572	intron	bw -	chr2R	23533368	intron	bw -	chr2R	23537165	exon	bw -	chr2R_8_23530001	chr2R_23530001	RAL-381
906	chr2R	23914300	23914315	chr2R	23921924	23921939	412	7	7622	6.5	8.5	7.5	0.8	7639	chr2R	23914300	exon	kcc +	chr2R	23918120	intron	kcc +	chr2R	23921939	intron	kcc +	chr2R_7_23915001	chr2R_23915001	RAL-381
907	chr2R	24147068	24147098	chr2R	24154645	24154676	412	5	7577	3.5	5.0	4.2	1.0	7608	chr2R	24147068	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154676	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-381
908	chr2R	24177236	24177265	chr2R	24184720	24184750	412	10	7484	3.5	0.5	2.0	3.3	7514	chr2R	24177236	3` UTR	Nop60B +	chr2R	24180993	intron	Nop60B +	chr2R	24184750	3` UTR	Nop60B +	chr2R_10_24180001	chr2R_24180001	RAL-381
914	chr2R	24353427	24353460	chr2R	24361789	24361822	roo	12	8362	1.5	6.0	3.8	2.5	8395	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361822	intron,intron	bs +,CR44811 -	chr2R_12_24355001	chr2R_24355001	RAL-381
917	chr2R	24647593	24647614	chr2R	24655150	24655171	412	11	7556	6.5	8.0	7.2	1.3	7578	chr2R	24647593	intergenic	not near genes	chr2R	24651382	intergenic	not near genes	chr2R	24655171	intergenic	not near genes	chr2R_11_24650001	chr2R_24650001	RAL-381
918	chr2R	24647615	24647617	chr2R	24655144	24655171	412	5	7546	6.5	7.0	6.8	0.6	7556	chr2R	24647615	intergenic	not near genes	chr2R	24651393	intergenic	not near genes	chr2R	24655171	intergenic	not near genes	chr2R_5_24650001	chr2R_24650001	RAL-381
921	chr2R	24727882	24727916	chr2R	24735390	24735424	mdg1	15	7507	2.0	4.0	3.0	3.8	7542	chr2R	24727882	intron	Mid1 -	chr2R	24731653	intron	Mid1 -	chr2R	24735424	intron	Mid1 -	chr2R_15_24730001	chr2R_24730001	RAL-381
922	chr2R	24763616	24763643	chr2R	24765590	24765618	G2	8	1972	4.0	4.5	4.2	1.5	2002	chr2R	24763616	exon	CG3894 +	chr2R	24764617	intron	CG3894 +	chr2R	24765618	exon	CG3894 +	chr2R_8_24760001	chr2R_24760001	RAL-381
933	chr2R	25141648	25141681	chr2R	25159338	25159371	roo	8	17690	1.5	2.0	1.8	2.9	17723	chr2R	25141648	intergenic	not near genes	chr2R	25150510	intergenic	not near genes	chr2R	25159371	intergenic	not near genes	chr2R_8_25150001	chr2R_25150001	RAL-381
935	chr3L	110209	110233	chr3L	119376	119399	roo	8	9166	5.0	5.0	5.0	1.3	9190	chr3L	110209	intergenic	not near genes	chr3L	114804	intergenic	not near genes	chr3L	119399	intergenic	not near genes	chr3L_8_110001	chr3L_110001	RAL-381
941	chr3L	402687	402718	chr3L	409740	409771	297	11	7052	4.0	6.5	5.2	1.8	7084	chr3L	402687	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_11_405001	chr3L_405001	RAL-381
948	chr3L	789917	789935	chr3L	790402	790420	roo	5	485	4.5	2.5	3.5	1.1	503	chr3L	789917	intergenic	not near genes	chr3L	790168	intergenic	not near genes	chr3L	790420	intergenic	not near genes	chr3L_5_790001	chr3L_790001	RAL-381
949	chr3L	925177	925203	chr3L	932603	932629	mdg1	11	7426	5.0	3.0	4.0	2.2	7452	chr3L	925177	intron	Glut1 +	chr3L	928903	intron	Glut1 +	chr3L	932629	intron	Glut1 +	chr3L_11_925001	chr3L_925001	RAL-381
950	chr3L	939770	939800	chr3L	940891	940921	jockey	11	1120	9.0	2.5	5.8	1.6	1151	chr3L	939770	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_11_940001	chr3L_940001	RAL-381
954	chr3L	1154136	1154157	chr3L	1163286	1163307	roo	5	9150	3.0	3.5	3.2	1.2	9171	chr3L	1154136	intron	bab2 -	chr3L	1158722	intron	bab2 -	chr3L	1163307	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-381
955	chr3L	1219596	1219625	chr3L	1227329	1227331	412	21	7730	2.5	4.5	3.5	4.7	7735	chr3L	1219596	intron	mwh +	chr3L	1223464	intron	mwh +	chr3L	1227331	intron	mwh +	chr3L_21_1220001	chr3L_1220001	RAL-381
959	chr3L	1505995	1506032	chr3L	1513592	1513629	17.6	19	7597	2.0	6.5	4.2	3.7	7634	chr3L	1505995	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513629	intron,intron	Psa +,cue -	chr3L_19_1505001	chr3L_1505001	RAL-381
977	chr3L	2447506	2447534	chr3L	2456662	2456689	roo	15	9155	2.5	8.0	5.2	2.4	9183	chr3L	2447506	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456689	intron	CG45186 +	chr3L_15_2450001	chr3L_2450001	RAL-381
981	chr3L	2751456	2751468	chr3L	2755751	2755763	F-element	4	4295	5.5	7.0	6.2	0.6	4307	chr3L	2751456	intron	Mrtf -	chr3L	2753610	intron	Mrtf -	chr3L	2755763	intron	Mrtf -	chr3L_4_2750001	chr3L_2750001	RAL-381
984	chr3L	2927840	2927867	chr3L	2936117	2936144	Tirant	7	8276	3.0	1.5	2.2	2.2	8304	chr3L	2927840	intron	Shab +	chr3L	2931992	intron	Shab +	chr3L	2936144	intron	Shab +	chr3L_7_2930001	chr3L_2930001	RAL-381
988	chr3L	3061286	3061317	chr3L	3069869	3069900	Tirant	6	8576	3.0	3.5	3.2	1.4	8614	chr3L	3061286	intron	CG32486 -	chr3L	3065593	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_6_3065001	chr3L_3065001	RAL-381
989	chr3L	3281465	3281476	chr3L	3281953	3281959	Doc	5	492	0.5	14.5	7.5	0.6	494	chr3L	3281465	intron	CG12017 +	chr3L	3281712	intron	CG12017 +	chr3L	3281959	intron	CG12017 +	chr3L_5_3280001	chr3L_3280001	RAL-381
991	chr3L	3475082	3475112	chr3L	3475516	3475556	jockey	13	443	2.0	4.0	3.0	3.2	474	chr3L	3475082	intron	CG42324 +	chr3L	3475319	intron	CG42324 +	chr3L	3475556	intron	CG42324 +	chr3L_13_3475001	chr3L_3475001	RAL-381
992	chr3L	3601303	3601328	chr3L	3606612	3606639	copia	12	5310	6.5	5.0	5.8	1.8	5336	chr3L	3601303	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_12_3600001	chr3L_3600001	RAL-381
997	chr3L	3833737	3833770	chr3L	3833978	3834011	pogo	9	241	2.5	0.0	1.2	4.1	274	chr3L	3833737	intron	enc +	chr3L	3833874	intron	enc +	chr3L	3834011	intron	enc +	chr3L_9_3830001	chr3L_3830001	RAL-381
1011	chr3L	4901128	4901153	chr3L	4907317	4907343	diver	14	6190	10.5	9.0	9.8	1.3	6215	chr3L	4901128	intergenic	CG13704 +	chr3L	4904236	intergenic	not near genes	chr3L	4907343	intergenic	not near genes	chr3L_14_4900001	chr3L_4900001	RAL-381
1012	chr3L	4898332	4898352	chr3L	4909494	4909514	diver	7	11162	19.0	25.5	22.2	0.3	11182	chr3L	4898332	3` UTR	CG13705 +	chr3L	4903923	intergenic	not near genes	chr3L	4909514	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	RAL-381
1014	chr3L	5045458	5045484	chr3L	5050239	5050265	Doc	6	4781	2.5	1.0	1.8	2.1	4807	chr3L	5045458	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050265	intron	Con -	chr3L_6_5045001	chr3L_5045001	RAL-381
1022	chr3L	5537721	5537751	chr3L	5538061	5538086	jockey	4	337	1.5	3.0	2.2	1.2	365	chr3L	5537721	intergenic	not near genes	chr3L	5537904	intergenic	not near genes	chr3L	5538086	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-381
1026	chr3L	5926329	5926347	chr3L	5926509	5926516	BS	8	184	4.5	7.0	5.8	1.2	187	chr3L	5926329	intron	Vap-33B +	chr3L	5926422	intron	Vap-33B +	chr3L	5926516	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	RAL-381
1027	chr3L	6001687	6001717	chr3L	6004387	6004417	jockey	8	2700	1.0	0.5	0.8	4.4	2730	chr3L	6001687	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004417	intron	PVRAP +	chr3L_8_6000001	chr3L_6000001	RAL-381
1028	chr3L	6040373	6040394	chr3L	6042729	6042750	Doc	5	2356	2.5	5.0	3.8	1.0	2377	chr3L	6040373	intergenic	Jon65Aiv +	chr3L	6041562	intergenic	not near genes	chr3L	6042750	intergenic	not near genes	chr3L_5_6040001	chr3L_6040001	RAL-381
1030	chr3L	6220914	6220946	chr3L	6230066	6230098	roo	15	9151	6.0	8.0	7.0	1.9	9184	chr3L	6220914	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230098	intergenic	not near genes	chr3L_15_6225001	chr3L_6225001	RAL-381
1031	chr3L	6335008	6335041	chr3L	6335479	6335512	297	8	467	1.5	3.5	2.5	2.3	504	chr3L	6335008	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_8_6335001	chr3L_6335001	RAL-381
1036	chr3L	6855931	6855956	chr3L	6860715	6860740	Doc	5	4784	5.0	3.5	4.2	1.0	4809	chr3L	6855931	intergenic	not near genes	chr3L	6858336	intergenic	not near genes	chr3L	6860740	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-381
1037	chr3L	6887516	6887547	chr3L	6895008	6895039	roo	8	7490	3.5	2.0	2.8	2.1	7523	chr3L	6887516	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895039	intergenic	not near genes	chr3L_8_6890001	chr3L_6890001	RAL-381
1050	chr3L	7377320	7377338	chr3L	7380425	7380443	297	5	3105	2.5	3.0	2.8	1.3	3123	chr3L	7377320	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380443	intron	SMSr -	chr3L_5_7375001	chr3L_7375001	RAL-381
1053	chr3L	7498755	7498792	chr3L	7503533	7503551	F-element	5	4774	3.0	1.0	2.0	1.7	4796	chr3L	7498755	5` UTR	CG8539 -	chr3L	7501153	intergenic	not near genes	chr3L	7503551	intergenic	not near genes	chr3L_5_7500001	chr3L_7500001	RAL-381
1058	chr3L	7793722	7793744	chr3L	7800774	7800796	297	5	7051	3.0	3.0	3.0	1.2	7074	chr3L	7793722	intron	CG32369 -	chr3L	7797259	intron	CG32369 -	chr3L	7800796	intron	CG32369 -	chr3L_5_7795001	chr3L_7795001	RAL-381
1061	chr3L	7885945	7885975	chr3L	7889758	7889789	Stalker4	8	3814	5.0	18.5	11.8	0.6	3844	chr3L	7885945	intron	CG32365 +	chr3L	7887867	intron	CG32365 +	chr3L	7889789	intron	CG32365 +	chr3L_8_7885001	chr3L_7885001	RAL-381
1062	chr3L	7886518	7886544	chr3L	7889036	7889062	Stalker4	8	2518	2.0	3.0	2.5	2.3	2544	chr3L	7886518	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889062	intron	CG32365 +	chr3L_8_7885001	chr3L_7885001	RAL-381
1063	chr3L	7885993	7886007	chr3L	7890905	7890920	Stalker4	5	4912	7.0	27.0	17.0	0.3	4927	chr3L	7885993	intron	CG32365 +	chr3L	7888456	intron	CG32365 +	chr3L	7890920	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-381
1065	chr3L	7985376	7985394	chr3L	7987705	7987723	NOF	4	2329	6.0	6.0	6.0	0.6	2347	chr3L	7985376	intron	nmo +	chr3L	7986550	intron	nmo +	chr3L	7987723	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-381
1067	chr3L	8019711	8019736	chr3L	8024121	8024150	NOF	5	4411	0.0	4.5	2.2	1.6	4439	chr3L	8019711	intron	nmo +	chr3L	8021930	intron	nmo +	chr3L	8024150	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-381
1073	chr3L	8498295	8498329	chr3L	8505762	8505796	blood	8	7466	0.0	2.5	1.2	3.6	7501	chr3L	8498295	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505796	intron	CG43163 -	chr3L_8_8500001	chr3L_8500001	RAL-381
1077	chr3L	8791277	8791294	chr3L	8796697	8796712	I-element	6	5419	6.0	0.0	3.0	1.5	5435	chr3L	8791277	exon	Fhos +	chr3L	8793994	intron	Fhos +	chr3L	8796712	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-381
1083	chr3L	9076926	9076957	chr3L	9084485	9084517	412	9	7560	5.0	8.0	6.5	1.2	7591	chr3L	9076926	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084517	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	RAL-381
1086	chr3L	9130578	9130582	chr3L	9134322	9134343	412	4	3756	5.0	7.0	6.0	0.6	3765	chr3L	9130578	intergenic	bol -	chr3L	9132460	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-381
1088	chr3L	9219243	9219277	chr3L	9219915	9219948	jockey	14	671	8.0	8.5	8.2	1.5	705	chr3L	9219243	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219948	intergenic	not near genes	chr3L_14_9215001	chr3L_9215001	RAL-381
1089	chr3L	9270632	9270644	chr3L	9278387	9278399	roo	4	7755	4.5	4.5	4.5	0.7	7767	chr3L	9270632	intron	GluRIB +	chr3L	9274516	intron	GluRIB +	chr3L	9278399	exon	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-381
1091	chr3L	9443521	9443540	chr3L	9445312	9445330	S-element	5	1790	2.5	3.0	2.8	1.3	1809	chr3L	9443521	intron	CG33926 +	chr3L	9444426	intron	CG33926 +	chr3L	9445330	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-381
1092	chr3L	9501707	9501727	chr3L	9502193	9502213	roo	4	485	1.5	4.0	2.8	1.1	506	chr3L	9501707	intron	path -	chr3L	9501960	intron	path -	chr3L	9502213	intron	path -	chr3L_4_9500001	chr3L_9500001	RAL-381
1097	chr3L	9571900	9571936	chr3L	9572248	9572284	jockey	5	344	2.0	2.0	2.0	1.7	384	chr3L	9571900	intron	CG42673 +	chr3L	9572092	intron	CG42673 +	chr3L	9572284	intron	CG42673 +	chr3L_5_9570001	chr3L_9570001	RAL-381
1098	chr3L	9575908	9575949	chr3L	9580986	9581003	jockey	16	5075	7.5	3.5	5.5	2.5	5095	chr3L	9575908	intron	CG42673 +	chr3L	9578456	intron	CG42673 +	chr3L	9581003	intron	CG42673 +	chr3L_16_9575001	chr3L_9575001	RAL-381
1104	chr3L	9929667	9929699	chr3L	9938446	9938478	roo	8	8779	2.5	2.5	2.5	2.3	8811	chr3L	9929667	intron	CG34356 +	chr3L	9934072	intron	CG34356 +	chr3L	9938478	intron	CG34356 +	chr3L_8_9930001	chr3L_9930001	RAL-381
1117	chr3L	10414942	10414976	chr3L	10417314	10417347	Doc	13	2372	0.5	2.0	1.2	5.9	2405	chr3L	10414942	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_13_10415001	chr3L_10415001	RAL-381
1133	chr3L	11087057	11087087	chr3L	11088846	11088860	S-element	14	1786	0.0	3.0	1.5	5.6	1803	chr3L	11087057	intron	JIL-1 -	chr3L	11087958	intron	JIL-1 -	chr3L	11088860	intron	JIL-1 -	chr3L_14_11085001	chr3L_11085001	RAL-381
1135	chr3L	11105293	11105327	chr3L	11107004	11107038	X-element	8	1709	3.0	2.5	2.8	2.1	1745	chr3L	11105293	intergenic	not near genes	chr3L	11106166	intergenic	not near genes	chr3L	11107038	exon	CG32073 -	chr3L_8_11105001	chr3L_11105001	RAL-381
1138	chr3L	11264463	11264495	chr3L	11271415	11271447	17.6	9	6952	5.0	1.5	3.2	2.1	6984	chr3L	11264463	intergenic	not near genes	chr3L	11267955	intergenic	not near genes	chr3L	11271447	intergenic	not near genes	chr3L_9_11265001	chr3L_11265001	RAL-381
1140	chr3L	11329697	11329722	chr3L	11332902	11332927	jockey	5	3204	7.5	8.0	7.8	0.6	3230	chr3L	11329697	intergenic	not near genes	chr3L	11331312	intergenic	not near genes	chr3L	11332927	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-381
1141	chr3L	11329724	11329728	chr3L	11332899	11332933	jockey	5	3197	6.0	8.0	7.0	0.6	3209	chr3L	11329724	intergenic	not near genes	chr3L	11331328	intergenic	not near genes	chr3L	11332933	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-381
1143	chr3L	11564796	11564813	chr3L	11572405	11572414	412	5	7610	6.0	6.5	6.2	0.7	7618	chr3L	11564796	exon	CG33267 +	chr3L	11568605	intron	CG33267 +	chr3L	11572414	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	RAL-381
1149	chr3L	11723082	11723116	chr3L	11727877	11727911	Doc	12	4795	4.0	1.5	2.8	3.2	4829	chr3L	11723082	3` UTR	Bmcp +	chr3L	11725496	intron	Bmcp +	chr3L	11727911	3` UTR	Bmcp +	chr3L_12_11725001	chr3L_11725001	RAL-381
1152	chr3L	11864554	11864582	chr3L	11865849	11865877	pogo	10	1294	8.0	5.0	6.5	1.3	1323	chr3L	11864554	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865877	intron	CG44837 -	chr3L_10_11865001	chr3L_11865001	RAL-381
1174	chr3L	12874949	12874958	chr3L	12877225	12877250	jockey	5	2288	3.5	2.5	3.0	1.2	2301	chr3L	12874949	intergenic	not near genes	chr3L	12876100	intergenic	not near genes	chr3L	12877250	intergenic	not near genes	chr3L_5_12875001	chr3L_12875001	RAL-381
1176	chr3L	12919284	12919287	chr3L	12924750	12924760	Rt1c	4	5470	7.0	4.5	5.8	0.6	5476	chr3L	12919284	intergenic	not near genes	chr3L	12922022	intergenic	not near genes	chr3L	12924760	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-381
1177	chr3L	12919301	12919309	chr3L	12924739	12924769	Rt1c	7	5460	2.5	4.5	3.5	1.6	5468	chr3L	12919301	intergenic	not near genes	chr3L	12922035	intergenic	not near genes	chr3L	12924769	intergenic	not near genes	chr3L_7_12920001	chr3L_12920001	RAL-381
1179	chr3L	12957785	12957817	chr3L	12962267	12962299	copia	12	4480	2.0	4.5	3.2	2.9	4514	chr3L	12957785	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962299	intergenic	not near genes	chr3L_12_12960001	chr3L_12960001	RAL-381
1199	chr3L	13525154	13525190	chr3L	13532950	13532986	roo	14	7794	4.5	5.0	4.8	2.4	7832	chr3L	13525154	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532986	intergenic	not near genes	chr3L_14_13525001	chr3L_13525001	RAL-381
1210	chr3L	14245585	14245589	chr3L	14245669	14245683	1360	6	92	7.5	2.5	5.0	1.0	98	chr3L	14245585	3` UTR	CR44561 -	chr3L	14245634	3` UTR	CR44561 -	chr3L	14245683	3` UTR	CR44561 -	chr3L_6_14245001	chr3L_14245001	RAL-381
1211	chr3L	14267364	14267383	chr3L	14271805	14271824	F-element	5	4441	5.0	3.0	4.0	1.0	4460	chr3L	14267364	intergenic	not near genes	chr3L	14269594	intergenic	not near genes	chr3L	14271824	intergenic	not near genes	chr3L_5_14265001	chr3L_14265001	RAL-381
1212	chr3L	14295996	14296016	chr3L	14296467	14296502	roo	7	483	0.5	3.0	1.8	2.5	506	chr3L	14295996	intron	fz +	chr3L	14296249	intron	fz +	chr3L	14296502	intron	fz +	chr3L_7_14295001	chr3L_14295001	RAL-381
1214	chr3L	14312041	14312057	chr3L	14316838	14316859	X-element	4	4806	2.0	2.5	2.2	1.2	4818	chr3L	14312041	exon	fz +	chr3L	14314450	intron	fz +	chr3L	14316859	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-381
1223	chr3L	14721184	14721206	chr3L	14723026	14723046	Rt1c	7	1839	2.5	5.5	4.0	1.4	1862	chr3L	14721184	intron	ome +	chr3L	14722115	intron	ome +	chr3L	14723046	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-381
1224	chr3L	14725599	14725627	chr3L	14728593	14728621	Doc	9	2994	1.0	2.5	1.8	3.2	3022	chr3L	14725599	intron	ome +	chr3L	14727110	intron	ome +	chr3L	14728621	intron	ome +	chr3L_9_14725001	chr3L_14725001	RAL-381
1231	chr3L	15423760	15423778	chr3L	15426604	15426622	opus	4	2844	3.5	3.5	3.5	0.9	2862	chr3L	15423760	intergenic	not near genes	chr3L	15425191	intergenic	not near genes	chr3L	15426622	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-381
1247	chr3L	16184113	16184126	chr3L	16188932	16188944	X-element	7	4819	4.5	4.0	4.2	1.3	4831	chr3L	16184113	intergenic	not near genes	chr3L	16186528	intergenic	not near genes	chr3L	16188944	intergenic	not near genes	chr3L_7_16185001	chr3L_16185001	RAL-381
1248	chr3L	16184128	16184141	chr3L	16188930	16188959	X-element	5	4814	3.5	3.5	3.5	1.1	4831	chr3L	16184128	intergenic	not near genes	chr3L	16186544	intergenic	not near genes	chr3L	16188959	intergenic	not near genes	chr3L_5_16185001	chr3L_16185001	RAL-381
1255	chr3L	16443850	16443878	chr3L	16446190	16446218	Doc	12	2339	1.0	3.5	2.2	3.8	2368	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446218	intron,intron	CG33158 +,dsx-c73A -	chr3L_12_16445001	chr3L_16445001	RAL-381
1259	chr3L	16493980	16493993	chr3L	16494491	16494499	jockey	8	515	8.0	6.5	7.2	1.0	519	chr3L	16493980	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494240	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494499	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_8_16490001	chr3L_16490001	RAL-381
1272	chr3L	16945730	16945757	chr3L	16954883	16954908	roo	13	9150	5.0	4.0	4.5	2.4	9178	chr3L	16945730	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954908	5` UTR	Nc73EF +	chr3L_13_16950001	chr3L_16950001	RAL-381
1275	chr3L	17085012	17085031	chr3L	17094161	17094180	roo	10	9149	1.5	4.0	2.8	2.6	9168	chr3L	17085012	intron	Rbp6 -	chr3L	17089596	intron	Rbp6 -	chr3L	17094180	intron	Rbp6 -	chr3L_10_17085001	chr3L_17085001	RAL-381
1287	chr3L	17516986	17517011	chr3L	17524544	17524564	412	8	7557	5.0	9.0	7.0	1.0	7578	chr3L	17516986	intron	CG7564 +	chr3L	17520775	intron	CG7564 +	chr3L	17524564	3` UTR	CG7564 +	chr3L_8_17520001	chr3L_17520001	RAL-381
1291	chr3L	17730862	17730879	chr3L	17738191	17738209	mdg1	4	7329	1.0	1.0	1.0	2.0	7347	chr3L	17730862	intron	Ccn +	chr3L	17734536	intron	Ccn +	chr3L	17738209	intron	Ccn +	chr3L_4_17730001	chr3L_17730001	RAL-381
1294	chr3L	17918378	17918398	chr3L	17921181	17921201	opus	5	2803	4.5	0.0	2.2	1.6	2823	chr3L	17918378	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921201	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	RAL-381
1308	chr3L	18506131	18506162	chr3L	18509594	18509625	F-element	12	3461	2.0	1.0	1.5	4.8	3494	chr3L	18506131	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509625	intergenic	not near genes	chr3L_12_18505001	chr3L_18505001	RAL-381
1309	chr3L	18528634	18528643	chr3L	18537794	18537804	roo	4	9161	4.0	1.0	2.5	1.1	9170	chr3L	18528634	intergenic	not near genes	chr3L	18533219	intergenic	not near genes	chr3L	18537804	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	RAL-381
1315	chr3L	18772406	18772442	chr3L	18781087	18781122	roo	13	8681	3.5	5.0	4.2	2.5	8716	chr3L	18772406	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_13_18775001	chr3L_18775001	RAL-381
1323	chr3L	19008845	19008870	chr3L	19009183	19009208	jockey	10	337	5.0	4.0	4.5	1.8	363	chr3L	19008845	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009208	intron	nkd -	chr3L_10_19005001	chr3L_19005001	RAL-381
1325	chr3L	19115635	19115668	chr3L	19115813	19115848	BS	13	176	4.0	0.5	2.2	4.1	213	chr3L	19115635	intron	CG14082 -	chr3L	19115742	intron	CG14082 -	chr3L	19115848	intron	CG14082 -	chr3L_13_19115001	chr3L_19115001	RAL-381
1326	chr3L	19117046	19117076	chr3L	19124493	19124523	mdg1	14	7444	5.0	6.5	5.8	2.1	7477	chr3L	19117046	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124523	intron	CG14082 -	chr3L_14_19120001	chr3L_19120001	RAL-381
1330	chr3L	19208056	19208090	chr3L	19209430	19209459	Doc	11	1373	3.0	2.5	2.8	2.9	1403	chr3L	19208056	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209459	intron	fz2 -	chr3L_11_19205001	chr3L_19205001	RAL-381
1341	chr3L	19848504	19848534	chr3L	19857693	19857724	roo	8	9190	2.0	5.0	3.5	1.8	9220	chr3L	19848504	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857724	intron	Papss +	chr3L_8_19850001	chr3L_19850001	RAL-381
1342	chr3L	19861826	19861844	chr3L	19863614	19863632	S-element	8	1788	3.5	3.5	3.5	1.8	1806	chr3L	19861826	5` UTR	CR45433 +	chr3L	19862729	intergenic	not near genes	chr3L	19863632	intergenic	not near genes	chr3L_8_19860001	chr3L_19860001	RAL-381
1345	chr3L	20113669	20113686	chr3L	20122926	20122943	roo	4	9257	1.0	1.5	1.2	1.8	9274	chr3L	20113669	intergenic	not near genes	chr3L	20118306	intergenic	not near genes	chr3L	20122943	intergenic	not near genes	chr3L_4_20115001	chr3L_20115001	RAL-381
1347	chr3L	20257345	20257358	chr3L	20258465	20258478	pogo	6	1120	1.5	8.5	5.0	1.0	1133	chr3L	20257345	intron	rdgC +	chr3L	20257912	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-381
1351	chr3L	20476755	20476782	chr3L	20484354	20484381	springer	4	7599	3.0	1.0	2.0	1.3	7626	chr3L	20476755	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484381	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	RAL-381
1356	chr3L	21014915	21014924	chr3L	21023396	21023402	Tirant	4	8480	9.0	3.0	6.0	0.6	8487	chr3L	21014915	intron	skd -	chr3L	21019158	intron	skd -	chr3L	21023402	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-381
1357	chr3L	21014930	21014946	chr3L	21023395	21023413	Tirant	10	8469	5.0	2.5	3.8	2.1	8483	chr3L	21014930	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023413	intron	skd -	chr3L_10_21015001	chr3L_21015001	RAL-381
1360	chr3L	21151871	21151884	chr3L	21156955	21156968	flea	4	5084	4.0	1.0	2.5	1.1	5097	chr3L	21151871	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156968	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-381
1361	chr3L	21243747	21243768	chr3L	21251309	21251331	412	12	7562	4.0	6.5	5.2	1.9	7584	chr3L	21243747	intron	Eip78C +	chr3L	21247539	intron	Eip78C +	chr3L	21251331	intron	Eip78C +	chr3L_12_21245001	chr3L_21245001	RAL-381
1362	chr3L	21306158	21306173	chr3L	21315317	21315332	roo	5	9159	6.0	3.5	4.8	0.9	9174	chr3L	21306158	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310745	intron	Pc -	chr3L	21315332	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-381
1363	chr3L	21306174	21306181	chr3L	21315308	21315340	roo	4	9152	4.5	2.5	3.5	0.9	9166	chr3L	21306174	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310757	intron	Pc -	chr3L	21315340	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-381
1366	chr3L	21458342	21458357	chr3L	21458437	21458446	INE-1	5	94	3.0	2.5	2.8	1.3	104	chr3L	21458342	intergenic	not near genes	chr3L	21458394	intergenic	not near genes	chr3L	21458446	intergenic	not near genes	chr3L_5_21455001	chr3L_21455001	RAL-381
1367	chr3L	21498834	21498866	chr3L	21500470	21500502	1360	12	1630	7.0	3.0	5.0	2.0	1668	chr3L	21498834	intron	Glg1 -	chr3L	21499668	intron	Glg1 -	chr3L	21500502	intron	Glg1 -	chr3L_12_21495001	chr3L_21495001	RAL-381
1371	chr3L	21749315	21749349	chr3L	21754475	21754498	Doc	11	5157	4.5	2.0	3.2	2.6	5183	chr3L	21749315	intron	Syn1 -	chr3L	21751906	intron	Syn1 -	chr3L	21754498	intron	Syn1 -	chr3L_11_21750001	chr3L_21750001	RAL-381
1381	chr3L	22099679	22099704	chr3L	22105865	22105890	3S18	6	6185	3.0	2.0	2.5	1.7	6211	chr3L	22099679	intergenic	not near genes	chr3L	22102784	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_6_22100001	chr3L_22100001	RAL-381
1389	chr3L	22555775	22555803	chr3L	22563242	22563243	blood	9	7463	3.0	2.0	2.5	2.6	7468	chr3L	22555775	intergenic	not near genes	chr3L	22559509	intergenic	not near genes	chr3L	22563243	intergenic	not near genes	chr3L_9_22555001	chr3L_22555001	RAL-381
1391	chr3L	22577633	22577652	chr3L	22582402	22582438	Doc	14	4783	0.5	3.5	2.0	4.7	4805	chr3L	22577633	intergenic	not near genes	chr3L	22580036	intergenic	not near genes	chr3L	22582438	3` UTR	CG14459 -	chr3L_14_22580001	chr3L_22580001	RAL-381
1392	chr3L	22617199	22617222	chr3L	22624640	22624672	blood	9	7444	4.5	4.0	4.2	1.7	7473	chr3L	22617199	intron	CG14459 -	chr3L	22620936	intron	CG14459 -	chr3L	22624672	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-381
1395	chr3L	22761397	22761415	chr3L	22766831	22766848	Ivk	5	5434	1.0	5.5	3.2	1.2	5451	chr3L	22761397	intron	SPoCk +	chr3L	22764122	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-381
1397	chr3L	22865981	22866015	chr3L	22867114	22867148	Doc	10	1131	4.5	3.0	3.8	2.1	1167	chr3L	22865981	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867148	intron	CG33170 +	chr3L_10_22865001	chr3L_22865001	RAL-381
1407	chr3L	22989863	22989895	chr3L	22996837	22996865	297	10	6972	2.5	2.5	2.5	2.9	7002	chr3L	22989863	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996865	intergenic	not near genes	chr3L_10_22990001	chr3L_22990001	RAL-381
1414	chr3L	24168786	24168822	chr3L	24176114	24176145	ZAM	5	7323	3.5	7.0	5.2	0.8	7359	chr3L	24168786	intron	Snap25 +	chr3L	24172466	intron	Snap25 +	chr3L	24176145	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-381
1423	chr3R	4105038	4105064	chr3R	4110242	4110267	copia	5	5202	2.0	3.5	2.8	1.3	5229	chr3R	4105038	intergenic	not near genes	chr3R	4107652	intergenic	not near genes	chr3R	4110267	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	RAL-381
1424	chr3R	4206070	4206088	chr3R	4211644	4211663	mdg3	5	5575	6.0	1.5	3.8	1.0	5593	chr3R	4206070	intron	CG14636 -	chr3R	4208866	intron	CG14636 -	chr3R	4211663	intron	CG14636 -	chr3R_5_4205001	chr3R_4205001	RAL-381
1425	chr3R	4408413	4408429	chr3R	4412717	4412733	Juan	6	4304	2.5	3.0	2.8	1.6	4320	chr3R	4408413	intron	CG32944 -	chr3R	4410573	intron	CG32944 -	chr3R	4412733	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-381
1428	chr3R	4753239	4753260	chr3R	4757542	4757542	F-element	10	4301	8.0	4.5	6.2	1.4	4303	chr3R	4753239	intron,intron	atms +,CG44098 -	chr3R	4755390	intron,intron	atms +,CG44098 -	chr3R	4757542	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	RAL-381
1429	chr3R	4753265	4753268	chr3R	4757540	4757565	F-element	4	4294	7.0	4.0	5.5	0.6	4300	chr3R	4753265	intron,intron	atms +,CG44098 -	chr3R	4755415	intron,intron	atms +,CG44098 -	chr3R	4757565	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-381
1433	chr3R	4887477	4887512	chr3R	4894854	4894889	rover	9	7372	1.5	3.5	2.5	2.6	7412	chr3R	4887477	intergenic	not near genes	chr3R	4891183	intergenic	not near genes	chr3R	4894889	intergenic	not near genes	chr3R_9_4890001	chr3R_4890001	RAL-381
1438	chr3R	5045848	5045867	chr3R	5052950	5052969	HMS-Beagle	4	7102	8.0	2.5	5.2	0.6	7121	chr3R	5045848	intron	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052969	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-381
1439	chr3R	5067981	5068014	chr3R	5073498	5073498	mdg3	5	5510	4.0	2.0	3.0	1.2	5517	chr3R	5067981	intergenic	not near genes	chr3R	5070740	intergenic	not near genes	chr3R	5073498	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-381
1443	chr3R	5338396	5338428	chr3R	5343573	5343602	Rt1c	9	5176	3.0	3.5	3.2	2.1	5206	chr3R	5338396	intron	mtd -	chr3R	5340999	intron	mtd -	chr3R	5343602	intron	mtd -	chr3R_9_5340001	chr3R_5340001	RAL-381
1445	chr3R	5445962	5445993	chr3R	5452422	5452452	Burdock	10	6460	2.0	2.0	2.0	3.3	6490	chr3R	5445962	intron	CG14669 +	chr3R	5449207	intron	CG14669 +	chr3R	5452452	intron	CG14669 +	chr3R_10_5445001	chr3R_5445001	RAL-381
1448	chr3R	5746017	5746043	chr3R	5746258	5746284	pogo	9	240	4.0	6.0	5.0	1.5	267	chr3R	5746017	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746284	3` UTR	Madm +	chr3R_9_5745001	chr3R_5745001	RAL-381
1449	chr3R	5809113	5809128	chr3R	5809363	5809378	pogo	9	250	6.0	2.0	4.0	1.8	265	chr3R	5809113	3` UTR	CG11000 +	chr3R	5809246	3` UTR	CG11000 +	chr3R	5809378	3` UTR	CG11000 +	chr3R_9_5805001	chr3R_5805001	RAL-381
1450	chr3R	5822381	5822413	chr3R	5823548	5823575	1360	8	1166	1.5	5.5	3.5	1.8	1194	chr3R	5822381	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823575	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	RAL-381
1451	chr3R	6015960	6015995	chr3R	6024441	6024476	Tirant	10	8476	3.5	3.5	3.5	2.2	8516	chr3R	6015960	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_10_6020001	chr3R_6020001	RAL-381
1452	chr3R	6121171	6121189	chr3R	6121389	6121407	BS	7	218	0.0	1.5	0.8	3.9	236	chr3R	6121171	intergenic	not near genes	chr3R	6121289	intergenic	not near genes	chr3R	6121407	intergenic	not near genes	chr3R_7_6120001	chr3R_6120001	RAL-381
1454	chr3R	6158507	6158541	chr3R	6167090	6167124	Tirant	9	8578	6.0	3.5	4.8	1.6	8617	chr3R	6158507	intergenic	not near genes	chr3R	6162816	intergenic	not near genes	chr3R	6167124	intergenic	CG1077 +	chr3R_9_6160001	chr3R_6160001	RAL-381
1455	chr3R	6175172	6175207	chr3R	6182444	6182479	HMS-Beagle2	10	7268	0.0	5.0	2.5	2.9	7307	chr3R	6175172	intergenic	Osi1 +	chr3R	6178826	intron	CR45194 +	chr3R	6182479	intergenic	CR45194 +	chr3R_10_6175001	chr3R_6175001	RAL-381
1457	chr3R	6206283	6206318	chr3R	6206500	6206535	BS	17	216	2.5	4.5	3.5	3.8	252	chr3R	6206283	exon	Osi24 +	chr3R	6206409	intron	Osi24 +	chr3R	6206535	intron	Osi24 +	chr3R_17_6205001	chr3R_6205001	RAL-381
1470	chr3R	6737497	6737529	chr3R	6739284	6739315	Doc	6	1782	3.5	2.5	3.0	1.5	1818	chr3R	6737497	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739315	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-381
1489	chr3R	7694584	7694608	chr3R	7713645	7713669	invader3	4	19061	1.0	2.5	1.8	1.4	19085	chr3R	7694584	3` UTR	Nlg1 +	chr3R	7704126	intergenic	not near genes	chr3R	7713669	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-381
1490	chr3R	7729467	7729499	chr3R	7737405	7737437	Stalker2	10	7936	1.5	3.5	2.5	2.9	7970	chr3R	7729467	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_10_7730001	chr3R_7730001	RAL-381
1492	chr3R	7973315	7973342	chr3R	7974377	7974404	1360	8	1062	0.5	2.0	1.2	3.6	1089	chr3R	7973315	intergenic	not near genes	chr3R	7973860	intergenic	not near genes	chr3R	7974404	intergenic	CD98hc -	chr3R_8_7970001	chr3R_7970001	RAL-381
1493	chr3R	8094416	8094434	chr3R	8099721	8099739	Transpac	5	5305	3.5	2.0	2.8	1.3	5323	chr3R	8094416	intron	CG7900 +	chr3R	8097078	intron	CG7900 +	chr3R	8099739	intron	CG7900 +	chr3R_5_8095001	chr3R_8095001	RAL-381
1494	chr3R	8101765	8101787	chr3R	8104849	8104871	G2	6	3084	3.5	4.5	4.0	1.2	3106	chr3R	8101765	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104871	3` UTR	CG7900 +	chr3R_6_8100001	chr3R_8100001	RAL-381
1496	chr3R	8207563	8207575	chr3R	8208406	8208419	F-element	4	844	5.0	7.5	6.2	0.6	856	chr3R	8207563	intergenic	not near genes	chr3R	8207991	intergenic	not near genes	chr3R	8208419	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RAL-381
1500	chr3R	8403012	8403035	chr3R	8412178	8412189	roo	9	9162	5.5	3.5	4.5	1.6	9177	chr3R	8403012	intron	CG45263 -	chr3R	8407600	intron	CG45263 -	chr3R	8412189	intron	CG45263 -	chr3R_9_8405001	chr3R_8405001	RAL-381
1501	chr3R	8403036	8403041	chr3R	8412177	8412200	roo	5	9158	4.0	3.5	3.8	1.0	9164	chr3R	8403036	intron	CG45263 -	chr3R	8407618	intron	CG45263 -	chr3R	8412200	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-381
1505	chr3R	8570477	8570511	chr3R	8575113	8575147	HMS-Beagle	19	4635	4.0	5.5	4.8	3.3	4670	chr3R	8570477	intergenic	not near genes	chr3R	8572812	intergenic	not near genes	chr3R	8575147	intergenic	not near genes	chr3R_19_8570001	chr3R_8570001	RAL-381
1507	chr3R	8601770	8601797	chr3R	8610922	8610950	roo	17	9151	6.5	4.0	5.2	2.7	9180	chr3R	8601770	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610950	intron	5-HT2B +	chr3R_17_8605001	chr3R_8605001	RAL-381
1510	chr3R	8707354	8707384	chr3R	8709795	8709825	jockey	11	2440	6.0	8.0	7.0	1.4	2471	chr3R	8707354	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709825	intergenic	not near genes	chr3R_11_8705001	chr3R_8705001	RAL-381
1522	chr3R	9278787	9278810	chr3R	9284047	9284047	Rt1a	15	5258	10.0	8.0	9.0	1.5	5260	chr3R	9278787	intergenic	not near genes	chr3R	9281417	intergenic	not near genes	chr3R	9284047	intergenic	not near genes	chr3R_15_9280001	chr3R_9280001	RAL-381
1523	chr3R	9319580	9319605	chr3R	9320015	9320040	jockey	9	434	3.0	4.5	3.8	1.9	460	chr3R	9319580	intron	CG8861 -	chr3R	9319810	intron	CG8861 -	chr3R	9320040	intron	CG8861 -	chr3R_9_9315001	chr3R_9315001	RAL-381
1530	chr3R	10231781	10231794	chr3R	10237358	10237370	mdg3	4	5577	2.5	2.5	2.5	1.1	5589	chr3R	10231781	intron	CG42795 +	chr3R	10234576	intron	CG42795 +	chr3R	10237370	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-381
1539	chr3R	10804185	10804191	chr3R	10811717	10811723	17.6	4	7532	1.5	6.5	4.0	0.8	7538	chr3R	10804185	intergenic	CG14692 -	chr3R	10807954	intergenic	not near genes	chr3R	10811723	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-381
1550	chr3R	11379234	11379269	chr3R	11388389	11388424	roo	8	9155	4.5	2.0	3.2	1.9	9190	chr3R	11379234	intron	pros +	chr3R	11383829	intron	pros +	chr3R	11388424	intron	pros +	chr3R_8_11380001	chr3R_11380001	RAL-381
1558	chr3R	11841062	11841091	chr3R	11846253	11846279	BS	11	5190	4.0	6.5	5.2	1.8	5217	chr3R	11841062	intron	CG6959 -	chr3R	11843670	intron	CG6959 -	chr3R	11846279	intron	CG6959 -	chr3R_11_11840001	chr3R_11840001	RAL-381
1563	chr3R	12022886	12022907	chr3R	12025063	12025084	pogo	6	2177	6.0	5.0	5.5	0.9	2198	chr3R	12022886	intergenic	not near genes	chr3R	12023985	intergenic	not near genes	chr3R	12025084	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-381
1578	chr3R	12920156	12920185	chr3R	12925357	12925367	copia	10	5197	2.0	5.0	3.5	2.2	5211	chr3R	12920156	intron	beat-Vb +	chr3R	12922762	intron	beat-Vb +	chr3R	12925367	intron	beat-Vb +	chr3R_10_12920001	chr3R_12920001	RAL-381
1581	chr3R	13135826	13135859	chr3R	13138001	13138034	pogo	14	2175	2.5	3.5	3.0	3.5	2208	chr3R	13135826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136930	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138034	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_14_13135001	chr3R_13135001	RAL-381
1582	chr3R	13143032	13143065	chr3R	13148609	13148642	mdg3	10	5574	5.5	1.5	3.5	2.2	5610	chr3R	13143032	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145837	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148642	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_10_13145001	chr3R_13145001	RAL-381
1589	chr3R	13517224	13517258	chr3R	13520041	13520043	jockey	9	2813	0.5	2.5	1.5	3.6	2819	chr3R	13517224	intergenic	not near genes	chr3R	13518634	intergenic	not near genes	chr3R	13520043	intergenic	not near genes	chr3R_9_13515001	chr3R_13515001	RAL-381
1596	chr3R	14180810	14180838	chr3R	14185575	14185603	F-element	7	4764	1.0	0.0	0.5	4.7	4793	chr3R	14180810	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185603	intron	Dop1R1 -	chr3R_7_14180001	chr3R_14180001	RAL-381
1598	chr3R	14246405	14246408	chr3R	14247889	14247904	jockey	4	1490	5.5	4.0	4.8	0.7	1499	chr3R	14246405	intergenic	not near genes	chr3R	14247154	intergenic	not near genes	chr3R	14247904	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-381
1599	chr3R	14246415	14246417	chr3R	14247884	14247912	jockey	4	1482	5.0	2.5	3.8	0.8	1497	chr3R	14246415	intergenic	not near genes	chr3R	14247164	intergenic	not near genes	chr3R	14247912	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-381
1615	chr3R	15041402	15041418	chr3R	15045186	15045202	Doc	5	3784	0.0	2.0	1.0	2.5	3800	chr3R	15041402	intergenic	not near genes	chr3R	15043302	intergenic	not near genes	chr3R	15045202	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	RAL-381
1622	chr3R	15132057	15132077	chr3R	15135117	15135137	Juan	7	3059	6.0	6.5	6.2	1.0	3080	chr3R	15132057	intergenic	CG42788 -	chr3R	15133597	intergenic	not near genes	chr3R	15135137	3` UTR	CG6912 -	chr3R_7_15130001	chr3R_15130001	RAL-381
1624	chr3R	15162554	15162563	chr3R	15167312	15167330	F-element	5	4763	5.0	0.0	2.5	1.4	4776	chr3R	15162554	intron	Gyc88E +	chr3R	15164942	intron	Gyc88E +	chr3R	15167330	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	RAL-381
1630	chr3R	15601164	15601196	chr3R	15608686	15608718	412	12	7521	9.0	7.5	8.2	1.3	7554	chr3R	15601164	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_12_15600001	chr3R_15600001	RAL-381
1646	chr3R	16756318	16756351	chr3R	16762509	16762538	diver	18	6190	5.5	3.5	4.5	3.3	6220	chr3R	16756318	intron	bxd -	chr3R	16759428	intron	bxd -	chr3R	16762538	intron	bxd -	chr3R_18_16755001	chr3R_16755001	RAL-381
1654	chr3R	17294661	17294670	chr3R	17295089	17295098	BS	4	428	5.0	0.0	2.5	1.1	437	chr3R	17294661	intergenic	not near genes	chr3R	17294880	intergenic	not near genes	chr3R	17295098	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-381
1656	chr3R	17346693	17346707	chr3R	17348256	17348270	F-element	4	1563	2.0	5.0	3.5	0.9	1577	chr3R	17346693	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348270	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-381
1663	chr3R	17591282	17591325	chr3R	17591718	17591745	F-element	8	430	4.0	3.5	3.8	1.7	463	chr3R	17591282	intergenic	not near genes	chr3R	17591514	intergenic	not near genes	chr3R	17591745	intergenic	not near genes	chr3R_8_17590001	chr3R_17590001	RAL-381
1671	chr3R	17925861	17925885	chr3R	17927317	17927352	hobo	21	1462	4.0	7.5	5.8	3.1	1491	chr3R	17925861	intron	cpo +	chr3R	17926606	intron	cpo +	chr3R	17927352	intron	cpo +	chr3R_21_17925001	chr3R_17925001	RAL-381
1673	chr3R	18032786	18032802	chr3R	18040459	18040475	opus	6	7673	0.0	0.0	0.0	6.0	7689	chr3R	18032786	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040475	intergenic	not near genes	chr3R_6_18035001	chr3R_18035001	RAL-381
1698	chr3R	19193002	19193008	chr3R	19197281	19197312	F-element	5	4289	0.0	5.0	2.5	1.4	4310	chr3R	19193002	intron	CG31475 +	chr3R	19195157	intron	CG31475 +	chr3R	19197312	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-381
1712	chr3R	20109536	20109570	chr3R	20114742	20114775	copia	12	5206	1.5	4.0	2.8	3.2	5239	chr3R	20109536	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114775	intergenic	CG10887 +	chr3R_12_20110001	chr3R_20110001	RAL-381
1713	chr3R	20156695	20156703	chr3R	20165865	20165870	roo	4	9169	7.5	5.0	6.2	0.6	9175	chr3R	20156695	intergenic	not near genes	chr3R	20161282	intergenic	not near genes	chr3R	20165870	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-381
1714	chr3R	20156706	20156720	chr3R	20165859	20165890	roo	5	9167	4.0	3.5	3.8	1.0	9184	chr3R	20156706	intergenic	not near genes	chr3R	20161298	intergenic	not near genes	chr3R	20165890	intergenic	not near genes	chr3R_5_20160001	chr3R_20160001	RAL-381
1717	chr3R	20266522	20266544	chr3R	20272987	20273015	Burdock	9	6470	6.0	0.5	3.2	2.1	6493	chr3R	20266522	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273015	intron	cic +	chr3R_9_20265001	chr3R_20265001	RAL-381
1725	chr3R	20854501	20854509	chr3R	20859271	20859298	Doc	5	4786	13.5	4.0	8.8	0.5	4797	chr3R	20854501	intron	Ir93a -	chr3R	20856900	intron	Ir93a -	chr3R	20859298	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-381
1732	chr3R	21141672	21141707	chr3R	21150153	21150177	Tirant	10	8478	8.5	5.0	6.8	1.3	8505	chr3R	21141672	intron	SNF4Agamma +	chr3R	21145924	intron	SNF4Agamma +	chr3R	21150177	intron	SNF4Agamma +	chr3R_10_21145001	chr3R_21145001	RAL-381
1742	chr3R	21761123	21761152	chr3R	21768511	21768515	mdg1	14	7387	5.0	5.5	5.2	2.3	7392	chr3R	21761123	exon	CG42335 +	chr3R	21764819	intron	CG42335 +	chr3R	21768515	intron	CG42335 +	chr3R_14_21760001	chr3R_21760001	RAL-381
1761	chr3R	22234687	22234707	chr3R	22236006	22236026	pogo	6	1318	4.0	2.5	3.2	1.4	1339	chr3R	22234687	intron	SKIP +	chr3R	22235356	intron	SKIP +	chr3R	22236026	intron	SKIP +	chr3R_6_22235001	chr3R_22235001	RAL-381
1762	chr3R	22239501	22239523	chr3R	22248557	22248582	roo	7	9059	1.5	5.5	3.5	1.6	9081	chr3R	22239501	intron	SKIP +	chr3R	22244042	intron	SKIP +	chr3R	22248582	intron	SKIP +	chr3R_7_22240001	chr3R_22240001	RAL-381
1765	chr3R	22450542	22450579	chr3R	22453182	22453189	NOF	15	2638	2.5	4.5	3.5	3.3	2647	chr3R	22450542	intron	CG34376 +	chr3R	22451866	intron	CG34376 +	chr3R	22453189	intron	CG34376 +	chr3R_15_22450001	chr3R_22450001	RAL-381
1780	chr3R	22881192	22881218	chr3R	22884898	22884924	Doc	5	3706	0.5	0.5	0.5	3.3	3732	chr3R	22881192	intergenic	not near genes	chr3R	22883058	intergenic	not near genes	chr3R	22884924	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	RAL-381
1799	chr3R	23684717	23684730	chr3R	23685187	23685198	roo	4	473	2.0	7.5	4.8	0.7	481	chr3R	23684717	intron	CG18754 +	chr3R	23684958	intron	CG18754 +	chr3R	23685198	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-381
1810	chr3R	24072084	24072115	chr3R	24072522	24072541	jockey	13	437	6.0	7.0	6.5	1.7	457	chr3R	24072084	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072541	intron	4EHP -	chr3R_13_24070001	chr3R_24070001	RAL-381
1811	chr3R	24076916	24076947	chr3R	24078383	24078414	hobo	9	1467	5.0	5.5	5.2	1.5	1498	chr3R	24076916	intron	4EHP -	chr3R	24077665	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_9_24075001	chr3R_24075001	RAL-381
1815	chr3R	24207217	24207242	chr3R	24212293	24212318	flea	8	5075	7.5	3.0	5.2	1.3	5101	chr3R	24207217	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212318	intron	twin -	chr3R_8_24205001	chr3R_24205001	RAL-381
1824	chr3R	24493275	24493302	chr3R	24493504	24493527	BS	5	228	1.0	2.5	1.8	1.8	252	chr3R	24493275	intergenic	not near genes	chr3R	24493401	intergenic	not near genes	chr3R	24493527	intergenic	not near genes	chr3R_5_24490001	chr3R_24490001	RAL-381
1828	chr3R	24730098	24730115	chr3R	24732476	24732493	Doc	9	2378	6.0	1.5	3.8	1.9	2395	chr3R	24730098	intron	tok +	chr3R	24731296	intron	tok +	chr3R	24732493	intron	tok +	chr3R_9_24730001	chr3R_24730001	RAL-381
1832	chr3R	24927132	24927138	chr3R	24931923	24931929	Doc	4	4791	4.0	4.0	4.0	0.8	4797	chr3R	24927132	intergenic	Trf4-2 +	chr3R	24929530	intergenic	not near genes	chr3R	24931929	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-381
1833	chr3R	24927142	24927155	chr3R	24931922	24931946	Doc	4	4787	3.0	3.5	3.2	1.0	4804	chr3R	24927142	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-381
1856	chr3R	25832692	25832724	chr3R	25841870	25841906	roo	13	9180	3.5	2.5	3.0	3.2	9214	chr3R	25832692	exon	alpha4GT2 +	chr3R	25837299	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_13_25835001	chr3R_25835001	RAL-381
1866	chr3R	26376327	26376346	chr3R	26385486	26385486	roo	7	9157	5.0	1.0	3.0	1.8	9159	chr3R	26376327	intergenic	not near genes	chr3R	26380906	intergenic	not near genes	chr3R	26385486	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-381
1868	chr3R	26510522	26510532	chr3R	26519577	26519587	roo	4	9055	4.5	3.5	4.0	0.8	9065	chr3R	26510522	intron	plum -	chr3R	26515054	intron	plum -	chr3R	26519587	intron,5` UTR	plum -,CR45226 +	chr3R_4_26515001	chr3R_26515001	RAL-381
1872	chr3R	26558328	26558361	chr3R	26565637	26565673	Stalker4	13	7309	2.0	2.0	2.0	4.3	7345	chr3R	26558328	intron	scrib +	chr3R	26562000	intron	scrib +	chr3R	26565673	intron	scrib +	chr3R_13_26560001	chr3R_26560001	RAL-381
1877	chr3R	26642740	26642760	chr3R	26643133	26643153	jockey	10	392	7.0	8.5	7.8	1.1	413	chr3R	26642740	intergenic	not near genes	chr3R	26642946	intergenic	not near genes	chr3R	26643153	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	RAL-381
1881	chr3R	26810553	26810583	chr3R	26811038	26811068	roo	8	484	4.0	4.0	4.0	1.6	515	chr3R	26810553	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811068	intron	Tl +	chr3R_8_26810001	chr3R_26810001	RAL-381
1885	chr3R	27007410	27007436	chr3R	27016545	27016571	roo	8	9135	3.0	1.5	2.2	2.5	9161	chr3R	27007410	intron	RYa-R +	chr3R	27011990	intron	RYa-R +	chr3R	27016571	intron	RYa-R +	chr3R_8_27010001	chr3R_27010001	RAL-381
1892	chr3R	27140523	27140545	chr3R	27148133	27148155	412	11	7610	6.0	6.0	6.0	1.6	7632	chr3R	27140523	intron	CG6051 -	chr3R	27144339	intron	CG6051 -	chr3R	27148155	intron	CG6051 -	chr3R_11_27140001	chr3R_27140001	RAL-381
1895	chr3R	27342792	27342821	chr3R	27351373	27351402	Tirant	8	8581	3.0	2.0	2.5	2.3	8610	chr3R	27342792	intron	CG42534 +	chr3R	27347097	intron	CG42534 +	chr3R	27351402	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-381
1901	chr3R	27725562	27725596	chr3R	27731004	27731038	I-element	8	5442	2.5	1.0	1.8	2.9	5476	chr3R	27725562	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731038	intergenic	not near genes	chr3R_8_27725001	chr3R_27725001	RAL-381
1905	chr3R	27856764	27856787	chr3R	27858247	27858269	hopper2	11	1483	5.0	3.0	4.0	2.2	1505	chr3R	27856764	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858269	intron	CG34353 -	chr3R_11_27855001	chr3R_27855001	RAL-381
1906	chr3R	27862952	27862979	chr3R	27868257	27868284	Transpac	4	5304	8.0	2.5	5.2	0.6	5332	chr3R	27862952	intron	CG34353 -	chr3R	27865618	intron	CG34353 -	chr3R	27868284	intron	CG34353 -	chr3R_4_27865001	chr3R_27865001	RAL-381
1907	chr3R	27875702	27875733	chr3R	27882757	27882788	297	14	7054	1.0	4.5	2.8	3.7	7086	chr3R	27875702	intron	CG34353 -	chr3R	27879245	intron	CG34353 -	chr3R	27882788	intron	CG34353 -	chr3R_14_27875001	chr3R_27875001	RAL-381
1910	chr3R	28068493	28068527	chr3R	28073935	28073969	I-element	8	5439	1.5	4.0	2.8	2.1	5476	chr3R	28068493	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073969	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	RAL-381
1915	chr3R	28253330	28253362	chr3R	28255840	28255872	jockey	12	2510	5.0	3.0	4.0	2.4	2542	chr3R	28253330	intergenic	not near genes	chr3R	28254601	intergenic	not near genes	chr3R	28255872	intergenic	not near genes	chr3R_12_28250001	chr3R_28250001	RAL-381
1916	chr3R	28302104	28302124	chr3R	28302543	28302563	jockey	6	439	3.0	5.5	4.2	1.2	459	chr3R	28302104	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302563	intergenic	not near genes	chr3R_6_28300001	chr3R_28300001	RAL-381
1926	chr3R	28758294	28758303	chr3R	28763911	28763920	roo	7	5617	4.5	0.0	2.2	2.2	5626	chr3R	28758294	intergenic	aqrs -	chr3R	28761107	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-381
1927	chr3R	28763900	28763920	chr3R	28771343	28771363	Stalker4	5	7442	0.0	2.5	1.2	2.3	7463	chr3R	28763900	intergenic	not near genes	chr3R	28767632	intergenic	not near genes	chr3R	28771363	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-381
1928	chr3R	28792884	28792901	chr3R	28797970	28797996	jockey	6	5091	2.0	2.0	2.0	2.0	5112	chr3R	28792884	intergenic	not near genes	chr3R	28795440	intergenic	not near genes	chr3R	28797996	intergenic	not near genes	chr3R_6_28795001	chr3R_28795001	RAL-381
1938	chr3R	29079378	29079403	chr3R	29080750	29080775	NOF	8	1372	3.0	3.0	3.0	2.0	1397	chr3R	29079378	intron	CG11873 +	chr3R	29080076	intron	CG11873 +	chr3R	29080775	intron	CG11873 +	chr3R_8_29080001	chr3R_29080001	RAL-381
1944	chr3R	29319828	29319858	chr3R	29320147	29320177	jockey	5	319	3.0	6.0	4.5	0.9	349	chr3R	29319828	intergenic	Cnx99A -	chr3R	29320002	intergenic	Cnx99A -	chr3R	29320177	intergenic	not near genes	chr3R_5_29320001	chr3R_29320001	RAL-381
1945	chr3R	29406616	29406648	chr3R	29407902	29407926	jockey	13	1283	4.5	7.0	5.8	1.9	1310	chr3R	29406616	intron	Ptp99A +	chr3R	29407271	intron	Ptp99A +	chr3R	29407926	intron	Ptp99A +	chr3R_13_29405001	chr3R_29405001	RAL-381
1958	chr3R	29882018	29882052	chr3R	29891175	29891209	roo	9	9157	4.0	2.5	3.2	2.1	9191	chr3R	29882018	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_9_29885001	chr3R_29885001	RAL-381
1964	chr3R	30084852	30084886	chr3R	30086319	30086353	hobo	13	1466	4.0	2.5	3.2	3.1	1501	chr3R	30084852	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086353	intron	sima +	chr3R_13_30085001	chr3R_30085001	RAL-381
1966	chr3R	30238764	30238776	chr3R	30239928	30239940	1360	5	1164	4.0	0.0	2.0	1.7	1176	chr3R	30238764	intergenic	not near genes	chr3R	30239352	intergenic	not near genes	chr3R	30239940	intergenic	not near genes	chr3R_5_30235001	chr3R_30235001	RAL-381
1971	chr3R	30396216	30396232	chr3R	30404482	30404498	roo	4	8266	3.5	5.5	4.5	0.7	8282	chr3R	30396216	intergenic	not near genes	chr3R	30400357	intergenic	not near genes	chr3R	30404498	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-381
1974	chr3R	30480479	30480514	chr3R	30482940	30482982	jockey	18	2465	2.0	7.0	4.5	3.3	2503	chr3R	30480479	intron	PH4alphaEFB +	chr3R	30481730	intron	PH4alphaEFB +	chr3R	30482982	intron	PH4alphaEFB +	chr3R_18_30480001	chr3R_30480001	RAL-381
1980	chr3R	30679517	30679552	chr3R	30686986	30687021	blood	5	7469	5.0	0.0	2.5	1.4	7504	chr3R	30679517	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-381
1983	chr3R	30818818	30818845	chr3R	30820376	30820410	1360	6	1564	2.5	3.0	2.8	1.6	1592	chr3R	30818818	intron	cindr +	chr3R	30819614	intron	cindr +	chr3R	30820410	intron	cindr +	chr3R_6_30815001	chr3R_30815001	RAL-381
1989	chr3R	31074231	31074250	chr3R	31081829	31081848	springer	5	7598	7.0	0.0	3.5	1.1	7617	chr3R	31074231	intron	Sox100B +	chr3R	31078040	intron	Sox100B +	chr3R	31081848	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-381
1992	chr3R	31279374	31279393	chr3R	31285565	31285583	diver	6	6189	9.5	5.0	7.2	0.7	6209	chr3R	31279374	intergenic	not near genes	chr3R	31282478	intergenic	not near genes	chr3R	31285583	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-381
1993	chr3R	31279394	31279404	chr3R	31285563	31285594	diver	11	6188	8.0	4.5	6.2	1.5	6200	chr3R	31279394	intergenic	not near genes	chr3R	31282494	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_11_31280001	chr3R_31280001	RAL-381
1994	chr3R	31413100	31413123	chr3R	31418289	31418307	copia	9	5197	1.5	6.0	3.8	1.9	5207	chr3R	31413100	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418307	intron	Gprk2 +	chr3R_9_31415001	chr3R_31415001	RAL-381
2001	chr3R	31691530	31691563	chr3R	31696296	31696329	Doc	17	4763	4.5	7.0	5.8	2.5	4799	chr3R	31691530	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696329	intergenic	not near genes	chr3R_17_31690001	chr3R_31690001	RAL-381
2008	chr3R	31997992	31998022	chr3R	32005462	32005475	blood	15	7466	5.5	4.5	5.0	2.5	7483	chr3R	31997992	intron	heph -	chr3R	32001734	intron	heph -	chr3R	32005475	intron	heph -	chr3R_15_32000001	chr3R_32000001	RAL-381
2011	chr4	76490	76504	chr4	81933	81937	I-element	6	5441	7.5	2.5	5.0	1.0	5447	chr4	76490	intron	pan +	chr4	79214	intron	pan +	chr4	81937	intron	pan +	chr4_6_75001	chr4_75001	RAL-381
2012	chr4	671604	671638	chr4	680187	680221	Tirant	11	8582	2.0	6.0	4.0	2.2	8617	chr4	671604	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680221	intron	CG11360 +	chr4_11_675001	chr4_675001	RAL-381
2016	chrX	318484	318501	chrX	323570	323587	flea	6	5086	1.5	3.5	2.5	1.7	5103	chrX	318484	intron,intron	CG3777 +,CG32816 -	chrX	321036	intron,intron	CG3777 +,CG32816 -	chrX	323587	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	RAL-381
2018	chrX	428416	428451	chrX	434601	434636	3S18	7	6185	6.0	1.0	3.5	1.6	6220	chrX	428416	intron	CG32816 -	chrX	431526	intron	CG32816 -	chrX	434636	intron	CG32816 -	chrX_7_430001	chrX_430001	RAL-381
2023	chrX	551420	551453	chrX	558982	559015	412	11	7560	5.5	1.5	3.5	2.4	7595	chrX	551420	intron	Appl +	chrX	555218	intron	Appl +	chrX	559015	intron	Appl +	chrX_11_555001	chrX_555001	RAL-381
2035	chrX	827600	827624	chrX	835392	835393	roo	9	7789	8.0	0.5	4.2	1.7	7793	chrX	827600	intron	CG43867 -	chrX	831496	intron	CG43867 -	chrX	835393	intron	CG43867 -	chrX_9_830001	chrX_830001	RAL-381
2036	chrX	906701	906734	chrX	908490	908523	S-element	16	1788	3.5	4.5	4.0	3.2	1822	chrX	906701	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_16_905001	chrX_905001	RAL-381
2038	chrX	1357781	1357806	chrX	1367951	1367976	Doc	6	10170	4.5	3.0	3.8	1.2	10195	chrX	1357781	intergenic	png -	chrX	1362878	intergenic	not near genes	chrX	1367976	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-381
2040	chrX	1518039	1518069	chrX	1523441	1523471	jockey	9	5400	5.0	6.0	5.5	1.4	5432	chrX	1518039	intergenic	inc +	chrX	1520755	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_9_1520001	chrX_1520001	RAL-381
2042	chrX	1627995	1628000	chrX	1635440	1635467	gtwin	4	7460	3.5	6.0	4.8	0.7	7472	chrX	1627995	intron,intron	Mur2B -,br +	chrX	1631731	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_4_1630001	chrX_1630001	RAL-381
2044	chrX	1954889	1954911	chrX	1962829	1962848	Stalker2	4	7936	4.0	3.5	3.8	0.8	7959	chrX	1954889	intron	Hr4 +	chrX	1958868	intron	Hr4 +	chrX	1962848	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-381
2052	chrX	2399835	2399858	chrX	2408188	2408211	roo	6	8353	5.0	1.0	3.0	1.5	8376	chrX	2399835	intergenic	not near genes	chrX	2404023	intergenic	not near genes	chrX	2408211	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-381
2056	chrX	2844899	2844932	chrX	2852309	2852342	mdg1	7	7410	0.5	3.0	1.8	2.5	7443	chrX	2844899	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852342	intron	kirre +	chrX_7_2845001	chrX_2845001	RAL-381
2061	chrX	3415015	3415043	chrX	3421200	3421228	3S18	10	6184	1.0	1.5	1.2	4.5	6213	chrX	3415015	intron,intron	CR44999 +,CG12535 -	chrX	3418122	intron,intron	CR44999 +,CG12535 -	chrX	3421228	intron,intron	CR44999 +,CG12535 -	chrX_10_3415001	chrX_3415001	RAL-381
2062	chrX	3493089	3493124	chrX	3502248	3502283	roo	10	9158	3.5	2.5	3.0	2.5	9194	chrX	3493089	intron,intron	CR44999 +,Gas8 -	chrX	3497686	intron,intron	CR44999 +,Gas8 -	chrX	3502283	intron,intron	CR44999 +,Gas8 -	chrX_10_3495001	chrX_3495001	RAL-381
2063	chrX	3597548	3597583	chrX	3619716	3619751	roo	19	22168	4.0	2.5	3.2	4.5	22203	chrX	3597548	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_19_3605001	chrX_3605001	RAL-381
2068	chrX	3726761	3726790	chrX	3730158	3730183	NOF	6	3396	3.5	7.0	5.2	1.0	3422	chrX	3726761	intron	tlk +	chrX	3728472	intron	tlk +	chrX	3730183	intron	tlk +	chrX_6_3725001	chrX_3725001	RAL-381
2071	chrX	3986861	3986887	chrX	3994494	3994520	412	7	7633	4.5	4.0	4.2	1.3	7659	chrX	3986861	intergenic	not near genes	chrX	3990690	intergenic	not near genes	chrX	3994520	intergenic	not near genes	chrX_7_3990001	chrX_3990001	RAL-381
2074	chrX	4157896	4157920	chrX	4164949	4164973	297	5	7049	5.5	1.5	3.5	1.1	7077	chrX	4157896	intron	Fas2 -	chrX	4161434	intron	Fas2 -	chrX	4164973	intron	Fas2 -	chrX_5_4160001	chrX_4160001	RAL-381
2080	chrX	4731814	4731833	chrX	4736907	4736922	jockey	10	5092	8.0	2.0	5.0	1.7	5108	chrX	4731814	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_10_4730001	chrX_4730001	RAL-381
2081	chrX	4763255	4763280	chrX	4763742	4763768	Stalker4	7	487	3.5	4.0	3.8	1.5	513	chrX	4763255	intergenic	not near genes	chrX	4763512	intergenic	not near genes	chrX	4763768	intergenic	not near genes	chrX_7_4760001	chrX_4760001	RAL-381
2082	chrX	4792381	4792398	chrX	4792813	4792831	jockey	4	433	6.0	8.5	7.2	0.5	450	chrX	4792381	intergenic	not near genes	chrX	4792606	intergenic	not near genes	chrX	4792831	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-381
2083	chrX	4792399	4792407	chrX	4792811	4792839	jockey	4	428	3.5	8.0	5.8	0.6	440	chrX	4792399	intergenic	not near genes	chrX	4792619	intergenic	not near genes	chrX	4792839	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-381
2089	chrX	5338716	5338731	chrX	5339969	5339983	jockey	5	1253	3.5	4.0	3.8	1.0	1267	chrX	5338716	intergenic	not near genes	chrX	5339350	intergenic	not near genes	chrX	5339983	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-381
2096	chrX	5883815	5883838	chrX	5884054	5884079	pogo	6	241	1.5	2.5	2.0	2.0	264	chrX	5883815	intron	CR45668 -	chrX	5883947	intron	CR45668 -	chrX	5884079	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RAL-381
2097	chrX	5884163	5884190	chrX	5884404	5884431	pogo	4	241	3.5	4.5	4.0	0.8	268	chrX	5884163	intron	CR45668 -	chrX	5884297	intron	CR45668 -	chrX	5884431	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-381
2099	chrX	6171596	6171617	chrX	6179014	6179050	Quasimodo	6	7430	3.0	2.5	2.8	1.6	7454	chrX	6171596	intron	Ca-alpha1T -	chrX	6175323	intron	Ca-alpha1T -	chrX	6179050	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-381
2102	chrX	6335215	6335235	chrX	6337722	6337745	Tirant	6	2508	0.0	5.5	2.8	1.6	2530	chrX	6335215	intergenic	not near genes	chrX	6336480	intergenic	not near genes	chrX	6337745	intergenic	CG3842 +	chrX_6_6335001	chrX_6335001	RAL-381
2103	chrX	6392868	6392902	chrX	6397633	6397662	Doc	11	4763	2.0	1.0	1.5	4.4	4794	chrX	6392868	intergenic	not near genes	chrX	6395265	intergenic	not near genes	chrX	6397662	intergenic	not near genes	chrX_11_6395001	chrX_6395001	RAL-381
2104	chrX	6562829	6562851	chrX	6571311	6571333	Tirant	7	8478	3.5	7.5	5.5	1.1	8504	chrX	6562829	intron	CG34417 +	chrX	6567081	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-381
2105	chrX	6605477	6605502	chrX	6608499	6608524	Burdock	6	3022	2.5	3.5	3.0	1.5	3047	chrX	6605477	intron	pigs +	chrX	6607000	intron	pigs +	chrX	6608524	intron	pigs +	chrX_6_6605001	chrX_6605001	RAL-381
2112	chrX	7023599	7023629	chrX	7030989	7031019	Tabor	14	7390	8.5	1.5	5.0	2.3	7420	chrX	7023599	intron	CG12541 -	chrX	7027309	intron	CG12541 -	chrX	7031019	intron	CG12541 -	chrX_14_7025001	chrX_7025001	RAL-381
2114	chrX	7125247	7125264	chrX	7134406	7134423	roo	6	9159	3.0	0.0	1.5	2.4	9176	chrX	7125247	intergenic	not near genes	chrX	7129835	intergenic	not near genes	chrX	7134423	intergenic	not near genes	chrX_6_7125001	chrX_7125001	RAL-381
2117	chrX	7702908	7702939	chrX	7703344	7703358	jockey	5	431	2.5	4.5	3.5	1.1	450	chrX	7702908	intron	CHES-1-like -	chrX	7703133	intron	CHES-1-like -	chrX	7703358	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-381
2120	chrX	7784236	7784242	chrX	7784538	7784542	jockey	4	302	3.0	9.0	6.0	0.6	306	chrX	7784236	intergenic	not near genes	chrX	7784389	intergenic	not near genes	chrX	7784542	intergenic	not near genes	chrX_4_7780001	chrX_7780001	RAL-381
2122	chrX	7845724	7845759	chrX	7847215	7847250	hopper2	8	1490	8.0	4.5	6.2	1.1	1526	chrX	7845724	intergenic	not near genes	chrX	7846487	intergenic	not near genes	chrX	7847250	intergenic	not near genes	chrX_8_7845001	chrX_7845001	RAL-381
2128	chrX	8922340	8922354	chrX	8922759	8922768	jockey	5	421	7.5	4.0	5.8	0.7	428	chrX	8922340	intron	rdgA +	chrX	8922554	intron	rdgA +	chrX	8922768	intron	rdgA +	chrX_5_8920001	chrX_8920001	RAL-381
2129	chrX	8927595	8927611	chrX	8929865	8929881	NOF	4	2269	1.5	3.0	2.2	1.2	2286	chrX	8927595	intron	rdgA +	chrX	8928738	intron	rdgA +	chrX	8929881	intron	rdgA +	chrX_4_8925001	chrX_8925001	RAL-381
2131	chrX	8948765	8948791	chrX	8956275	8956301	roo	7	7510	0.5	2.0	1.2	3.2	7536	chrX	8948765	intron	rdgA +	chrX	8952533	intron	rdgA +	chrX	8956301	intron	rdgA +	chrX_7_8950001	chrX_8950001	RAL-381
2136	chrX	9508140	9508161	chrX	9509656	9509679	jockey	8	1518	1.5	1.5	1.5	3.2	1539	chrX	9508140	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509679	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-381
2137	chrX	9575792	9575822	chrX	9576113	9576139	mdg3	17	320	3.5	5.0	4.2	3.3	347	chrX	9575792	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576139	intron,5` UTR	CG32699 -,CG42395 -	chrX_17_9575001	chrX_9575001	RAL-381
2141	chrX	10138215	10138248	chrX	10145719	10145751	412	8	7504	3.0	2.5	2.8	2.1	7536	chrX	10138215	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145751	intron,intron	RhoU +,CR44894 -	chrX_8_10140001	chrX_10140001	RAL-381
2146	chrX	10348814	10348823	chrX	10356379	10356386	springer	4	7564	0.5	1.0	0.8	2.2	7572	chrX	10348814	intergenic	snoRNA:U3:9B +	chrX	10352600	intergenic	not near genes	chrX	10356386	intergenic	l(1)G0289 -	chrX_4_10350001	chrX_10350001	RAL-381
2149	chrX	10550852	10550880	chrX	10552319	10552347	hobo	6	1466	4.0	2.5	3.2	1.4	1495	chrX	10550852	intron	spri -	chrX	10551600	intron	spri -	chrX	10552347	intron	spri -	chrX_6_10550001	chrX_10550001	RAL-381
2151	chrX	10686048	10686078	chrX	10691185	10691215	roo	8	5134	3.0	1.5	2.2	2.5	5167	chrX	10686048	intron	X11Lbeta +	chrX	10688632	intron	X11Lbeta +	chrX	10691215	intron	X11Lbeta +	chrX_8_10685001	chrX_10685001	RAL-381
2152	chrX	10772676	10772698	chrX	10772758	10772781	Tirant	9	81	2.0	1.0	1.5	3.6	105	chrX	10772676	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772781	intron	CG15211 +	chrX_9_10770001	chrX_10770001	RAL-381
2155	chrX	11194452	11194459	chrX	11201868	11201880	gypsy5	5	7420	3.5	10.0	6.8	0.6	7428	chrX	11194452	intergenic	not near genes	chrX	11198166	intergenic	not near genes	chrX	11201880	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	RAL-381
2158	chrX	11268567	11268589	chrX	11270054	11270082	hopper2	16	1490	3.5	4.0	3.8	3.3	1515	chrX	11268567	intron	CG44422 -	chrX	11269324	intron	CG44422 -	chrX	11270082	intron	CG44422 -	chrX_16_11265001	chrX_11265001	RAL-381
2161	chrX	11312056	11312093	chrX	11319409	11319430	Stalker2	8	7348	2.5	1.5	2.0	2.7	7374	chrX	11312056	intergenic	not near genes	chrX	11315743	intergenic	not near genes	chrX	11319430	intergenic	not near genes	chrX_8_11315001	chrX_11315001	RAL-381
2162	chrX	11633416	11633434	chrX	11640470	11640488	297	5	7054	2.5	3.5	3.0	1.2	7072	chrX	11633416	intron	Ptp10D +	chrX	11636952	intron	Ptp10D +	chrX	11640488	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-381
2167	chrX	12168136	12168160	chrX	12173578	12173586	I-element	6	5438	3.5	5.5	4.5	1.1	5450	chrX	12168136	intron	Ten-a +	chrX	12170861	intron	Ten-a +	chrX	12173586	intron	Ten-a +	chrX_6_12170001	chrX_12170001	RAL-381
2168	chrX	12301957	12301991	chrX	12303263	12303290	X-element	10	1304	2.5	4.0	3.2	2.4	1333	chrX	12301957	intron	Ten-a +	chrX	12302624	intron	Ten-a +	chrX	12303290	intron	Ten-a +	chrX_10_12300001	chrX_12300001	RAL-381
2178	chrX	13429463	13429493	chrX	13430612	13430642	jockey	12	1147	2.5	3.0	2.8	3.2	1179	chrX	13429463	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430642	intergenic	not near genes	chrX_12_13430001	chrX_13430001	RAL-381
2180	chrX	13463648	13463667	chrX	13469225	13469244	mdg3	4	5577	2.0	2.0	2.0	1.3	5596	chrX	13463648	intron	Neto +	chrX	13466446	intron	Neto +	chrX	13469244	intron	Neto +	chrX_4_13465001	chrX_13465001	RAL-381
2182	chrX	13937979	13938000	chrX	13941250	13941264	I-element	5	3270	2.5	1.5	2.0	1.7	3285	chrX	13937979	intron	mamo -	chrX	13939622	intron	mamo -	chrX	13941264	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-381
2186	chrX	14105031	14105055	chrX	14114172	14114204	roo	15	9150	7.5	4.5	6.0	2.1	9173	chrX	14105031	intergenic	not near genes	chrX	14109618	intergenic	not near genes	chrX	14114204	5` UTR	CR44657 +	chrX_15_14105001	chrX_14105001	RAL-381
2187	chrX	14157595	14157619	chrX	14163252	14163276	297	5	5657	2.0	1.5	1.8	1.8	5681	chrX	14157595	intergenic	not near genes	chrX	14160436	intergenic	not near genes	chrX	14163276	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-381
2191	chrX	14636467	14636493	chrX	14641902	14641908	I-element	9	5437	3.5	3.0	3.2	2.1	5441	chrX	14636467	intron	NetA -	chrX	14639188	intron	NetA -	chrX	14641908	intron	NetA -	chrX_9_14635001	chrX_14635001	RAL-381
2195	chrX	14778047	14778061	chrX	14782844	14782858	Doc	4	4797	2.5	3.0	2.8	1.1	4811	chrX	14778047	intergenic	CG5347 +	chrX	14780452	intergenic	not near genes	chrX	14782858	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-381
2196	chrX	14936862	14936893	chrX	14946119	14946150	roo	7	9257	3.5	4.0	3.8	1.5	9288	chrX	14936862	intron	pdgy -	chrX	14941506	intron	pdgy -	chrX	14946150	intron	pdgy -	chrX_7_14940001	chrX_14940001	RAL-381
2200	chrX	15273706	15273738	chrX	15274872	15274905	1360	13	1165	4.0	5.5	4.8	2.2	1199	chrX	15273706	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274905	intergenic	not near genes	chrX_13_15270001	chrX_15270001	RAL-381
2202	chrX	15413051	15413085	chrX	15417353	15417379	Juan	10	4301	6.0	3.0	4.5	1.8	4328	chrX	15413051	intron	Cngl -	chrX	15415215	intron	Cngl -	chrX	15417379	intron	Cngl -	chrX_10_15415001	chrX_15415001	RAL-381
2204	chrX	15435692	15435705	chrX	15436125	15436138	rover	6	433	0.0	7.0	3.5	1.3	446	chrX	15435692	intron	Cngl -	chrX	15435915	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-381
2214	chrX	16492659	16492673	chrX	16498236	16498250	mdg3	6	5577	3.5	4.0	3.8	1.2	5591	chrX	16492659	intron	para -	chrX	16495454	intron	para -	chrX	16498250	intron	para -	chrX_6_16495001	chrX_16495001	RAL-381
2220	chrX	16936002	16936032	chrX	16936420	16936450	jockey	4	418	1.5	0.0	0.8	2.2	448	chrX	16936002	intron	CG4928 +	chrX	16936226	intron	CG4928 +	chrX	16936450	intron	CG4928 +	chrX_4_16935001	chrX_16935001	RAL-381
2225	chrX	17792950	17792979	chrX	17796248	17796277	flea	6	3298	3.0	5.5	4.2	1.2	3327	chrX	17792950	intron	OdsH +	chrX	17794614	intron	OdsH +	chrX	17796277	intron	OdsH +	chrX_6_17790001	chrX_17790001	RAL-381
2230	chrX	18194068	18194101	chrX	18194603	18194610	BS	12	532	1.5	2.5	2.0	4.0	542	chrX	18194068	intron	Frq2 +	chrX	18194339	intron	Frq2 +	chrX	18194610	intron	Frq2 +	chrX_12_18190001	chrX_18190001	RAL-381
2244	chrX	19060409	19060438	chrX	19065193	19065222	Doc	6	4784	2.0	3.5	2.8	1.6	4813	chrX	19060409	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065222	intron	CG14190 +	chrX_6_19060001	chrX_19060001	RAL-381
2251	chrX	19356986	19357009	chrX	19358427	19358450	NOF	6	1440	3.0	0.0	1.5	2.4	1464	chrX	19356986	intron	kek5 +	chrX	19357718	intron	kek5 +	chrX	19358450	intron	kek5 +	chrX_6_19355001	chrX_19355001	RAL-381
2252	chrX	19380157	19380174	chrX	19380397	19380411	pogo	5	240	6.5	2.0	4.2	1.0	254	chrX	19380157	intron	kek5 +	chrX	19380284	intron	kek5 +	chrX	19380411	intron	kek5 +	chrX_5_19380001	chrX_19380001	RAL-381
2253	chrX	19472126	19472157	chrX	19472696	19472719	jockey	13	566	2.0	3.0	2.5	3.7	593	chrX	19472126	intergenic	kek5 +	chrX	19472422	intergenic	not near genes	chrX	19472719	intergenic	not near genes	chrX_13_19470001	chrX_19470001	RAL-381
2267	chrX	20377328	20377351	chrX	20378793	20378799	hobo	9	1464	8.0	5.5	6.8	1.2	1471	chrX	20377328	intergenic	not near genes	chrX	20378064	intergenic	not near genes	chrX	20378799	intergenic	not near genes	chrX_9_20375001	chrX_20375001	RAL-381
2270	chrX	20504126	20504156	chrX	20505647	20505677	transib2	6	1520	5.0	5.5	5.2	1.0	1551	chrX	20504126	intron	RhoGAP19D -	chrX	20504902	intron	RhoGAP19D -	chrX	20505677	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RAL-381
2276	chrX	20836728	20836758	chrX	20844330	20844360	roo	7	7600	0.5	2.5	1.5	2.8	7632	chrX	20836728	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844360	intron	shakB -	chrX_7_20840001	chrX_20840001	RAL-381
2279	chrX	20940718	20940756	chrX	20942187	20942225	hobo	13	1469	4.5	6.0	5.2	2.1	1507	chrX	20940718	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_13_20940001	chrX_20940001	RAL-381
2284	chrX	21086130	21086164	chrX	21087159	21087189	jockey	9	1027	3.0	3.5	3.2	2.1	1059	chrX	21086130	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087189	intergenic	not near genes	chrX_9_21085001	chrX_21085001	RAL-381
2287	chrX	21254652	21254674	chrX	21255568	21255590	hopper2	6	914	2.0	0.5	1.2	2.7	938	chrX	21254652	intron	CG32521 -	chrX	21255121	intron	CG32521 -	chrX	21255590	intron	CG32521 -	chrX_6_21255001	chrX_21255001	RAL-381
2292	chrX	21458693	21458710	chrX	21464128	21464146	Ivk	4	5436	0.0	2.5	1.2	1.8	5453	chrX	21458693	intergenic	not near genes	chrX	21461420	intergenic	not near genes	chrX	21464146	intergenic	not near genes	chrX_4_21460001	chrX_21460001	RAL-381
2294	chrX	21474402	21474433	chrX	21474768	21474799	1731	13	366	4.0	2.0	3.0	3.2	397	chrX	21474402	intergenic	not near genes	chrX	21474600	intergenic	not near genes	chrX	21474799	intergenic	not near genes	chrX_13_21470001	chrX_21470001	RAL-381
2302	chrX	22522637	22522654	chrX	22525457	22525474	NOF	7	2820	0.0	0.5	0.2	5.8	2837	chrX	22522637	intron	CG17600 +	chrX	22524056	intron	CG17600 +	chrX	22525474	intron	CG17600 +	chrX_7_22520001	chrX_22520001	RAL-381
2303	chrX	22697496	22697512	chrX	22701793	22701809	Juan	7	4297	6.5	3.5	5.0	1.2	4313	chrX	22697496	intron	CR44997 +	chrX	22699652	intron	CR44997 +	chrX	22701809	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-381
2304	chrX	22771509	22771539	chrX	22774797	22774830	297	8	3290	2.0	2.5	2.2	2.5	3321	chrX	22771509	intron	CR44997 +	chrX	22773170	intron	CR44997 +	chrX	22774830	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-381
2309	chrX	22996315	22996329	chrX	23003549	23003563	roo	6	7234	2.0	3.5	2.8	1.6	7248	chrX	22996315	intron,intron	stnA -,stnB -	chrX	22999939	intron,intron	stnA -,stnB -	chrX	23003563	intron,intron	stnA -,stnB -	chrX_6_22995001	chrX_22995001	RAL-381