SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47463 chr2L 52563 52568 jockey 6 5105 7.0 5.0 6.0 0.9 5110 chr2L 47458 intron Cda5 - chr2L 50013 intron Cda5 - chr2L 52568 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-381 2 chr2L 47475 47489 chr2L 52561 52594 jockey 6 5101 6.5 5.0 5.8 0.9 5119 chr2L 47475 intron Cda5 - chr2L 50034 intron Cda5 - chr2L 52594 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-381 3 chr2L 79839 79848 chr2L 80183 80190 6 343 19.5 20.0 19.8 0.3 351 chr2L 79839 intergenic not near genes chr2L 80014 intergenic not near genes chr2L 80190 intergenic not near genes chr2L_6_80001 chr2L_80001 RAL-381 4 chr2L 89715 89735 chr2L 89792 89812 4 77 16.5 13.0 14.8 0.3 97 chr2L 89715 intergenic not near genes chr2L 89764 intergenic not near genes chr2L 89812 intergenic not near genes chr2L_4_85001 chr2L_85001 RAL-381 5 chr2L 91173 91200 chr2L 91249 91276 7 76 11.5 10.0 10.8 0.6 103 chr2L 91173 intergenic not near genes chr2L 91224 intergenic not near genes chr2L 91276 intergenic not near genes chr2L_7_90001 chr2L_90001 RAL-381 6 chr2L 119746 119759 chr2L 119820 119832 6 76 7.5 12.5 10.0 0.5 86 chr2L 119746 intron,intron CG11455 +,CG4822 - chr2L 119789 intron,intron CG11455 +,CG4822 - chr2L 119832 intron,exon CG11455 +,CG4822 - chr2L_6_115001 chr2L_115001 RAL-381 7 chr2L 179460 179491 chr2L 179542 179574 4 83 10.5 11.0 10.8 0.3 114 chr2L 179460 intron spen + chr2L 179517 intron spen + chr2L 179574 intron spen + chr2L_4_175001 chr2L_175001 RAL-381 8 chr2L 180295 180328 chr2L 180463 180496 6 167 8.5 13.5 11.0 0.5 201 chr2L 180295 intron spen + chr2L 180396 intron spen + chr2L 180496 intron spen + chr2L_6_180001 chr2L_180001 RAL-381 9 chr2L 297690 297718 chr2L 297790 297816 8 99 2.0 1.5 1.8 2.9 126 chr2L 297690 intergenic Pi3K21B +,Hop + chr2L 297753 intergenic Pi3K21B +,Hop + chr2L 297816 intergenic Pi3K21B +,Hop + chr2L_8_295001 chr2L_295001 RAL-381 10 chr2L 325130 325141 chr2L 325207 325218 7 76 7.5 6.0 6.8 0.9 88 chr2L 325130 intron Plc21C + chr2L 325174 intron Plc21C + chr2L 325218 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-381 11 chr2L 325143 325158 chr2L 325201 325210 10 71 6.5 5.5 6.0 1.4 67 chr2L 325143 intron Plc21C + chr2L 325176 intron Plc21C + chr2L 325210 intron Plc21C + chr2L_10_325001 chr2L_325001 RAL-381 12 chr2L 347886 347916 chr2L 355385 355410 blood 6 7497 2.5 2.5 2.5 1.7 7524 chr2L 347886 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355410 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-381 13 chr2L 371442 371459 chr2L 371521 371538 4 79 1.0 4.0 2.5 1.1 96 chr2L 371442 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371538 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-381 14 chr2L 467360 467494 chr2L 467458 467582 6 92 7.5 8.0 7.8 0.7 222 chr2L 467360 intron CG4297 - chr2L 467471 intron CG4297 - chr2L 467582 intron CG4297 - chr2L_6_465001 chr2L_465001 RAL-381 15 chr2L 504319 504335 chr2L 504395 504407 5 75 13.0 12.5 12.8 0.4 88 chr2L 504319 intron ush + chr2L 504363 intron ush + chr2L 504407 intron ush + chr2L_5_500001 chr2L_500001 RAL-381 16 chr2L 597171 597178 chr2L 597299 597315 6 126 19.0 24.5 21.8 0.3 144 chr2L 597171 intergenic not near genes chr2L 597243 intergenic not near genes chr2L 597315 intergenic not near genes chr2L_6_595001 chr2L_595001 RAL-381 17 chr2L 605008 605037 chr2L 605094 605123 5 86 13.5 12.0 12.8 0.4 115 chr2L 605008 intergenic not near genes chr2L 605066 intergenic not near genes chr2L 605123 intergenic not near genes chr2L_5_605001 chr2L_605001 RAL-381 18 chr2L 630307 630334 chr2L 630399 630426 8 92 3.0 6.5 4.8 1.4 119 chr2L 630307 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630426 intergenic not near genes chr2L_8_630001 chr2L_630001 RAL-381 19 chr2L 686916 686945 chr2L 695956 695979 roo 8 9039 2.5 3.5 3.0 2.0 9063 chr2L 686916 intron ds - chr2L 691448 intron ds - chr2L 695979 intron ds - chr2L_8_690001 chr2L_690001 RAL-381 20 chr2L 741265 741283 chr2L 744803 744821 5 3538 26.5 11.0 18.8 0.3 3556 chr2L 741265 intron Eaat2 - chr2L 743043 intron Eaat2 - chr2L 744821 intergenic Eaat2 - chr2L_5_740001 chr2L_740001 RAL-381 21 chr2L 750014 750041 chr2L 750137 750158 5 121 14.5 10.5 12.5 0.4 144 chr2L 750014 5` UTR GABA-B-R3 + chr2L 750086 5` UTR GABA-B-R3 + chr2L 750158 5` UTR GABA-B-R3 + chr2L_5_750001 chr2L_750001 RAL-381 22 chr2L 770470 770477 chr2L 772251 772258 Bari1 6 1781 6.0 5.5 5.8 0.9 1788 chr2L 770470 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772258 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-381 23 chr2L 770478 770491 chr2L 772246 772272 Bari1 6 1777 4.0 4.0 4.0 1.2 1794 chr2L 770478 intergenic not near genes chr2L 771375 intergenic not near genes chr2L 772272 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-381 24 chr2L 777459 777478 chr2L 777540 777559 5 81 16.5 12.0 14.2 0.3 100 chr2L 777459 intergenic not near genes chr2L 777509 intergenic not near genes chr2L 777559 intergenic not near genes chr2L_5_775001 chr2L_775001 RAL-381 25 chr2L 848614 848640 chr2L 848698 848724 7 80 14.0 12.5 13.2 0.5 110 chr2L 848614 intron drongo - chr2L 848669 intron drongo - chr2L 848724 intron drongo - chr2L_7_845001 chr2L_845001 RAL-381 26 chr2L 877840 877869 chr2L 877921 877942 8 79 12.0 13.0 12.5 0.6 102 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-381 27 chr2L 908390 908405 chr2L 908470 908478 4 77 16.0 21.0 18.5 0.2 88 chr2L 908390 intergenic not near genes chr2L 908434 intergenic not near genes chr2L 908478 intergenic not near genes chr2L_4_905001 chr2L_905001 RAL-381 28 chr2L 922474 922493 chr2L 922553 922574 6 80 1.0 3.0 2.0 2.0 100 chr2L 922474 intergenic CG4341 + chr2L 922524 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_6_920001 chr2L_920001 RAL-381 29 chr2L 938004 938027 chr2L 938216 938242 6 214 10.0 12.0 11.0 0.5 238 chr2L 938004 intron CG4341 + chr2L 938123 intron CG4341 + chr2L 938242 intron CG4341 + chr2L_6_935001 chr2L_935001 RAL-381 30 chr2L 950317 950341 chr2L 950400 950426 5 85 6.0 10.0 8.0 0.6 109 chr2L 950317 intron CG4341 + chr2L 950372 intron CG4341 + chr2L 950426 intron CG4341 + chr2L_5_950001 chr2L_950001 RAL-381 31 chr2L 976877 976907 chr2L 984513 984543 roo 9 7636 2.5 1.0 1.8 3.2 7666 chr2L 976877 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-381 32 chr2L 990119 990145 chr2L 990206 990226 4 88 14.0 18.5 16.2 0.2 107 chr2L 990119 3` UTR CR44801 - chr2L 990172 3` UTR CR44801 - chr2L 990226 3` UTR CR44801 - chr2L_4_990001 chr2L_990001 RAL-381 33 chr2L 1035558 1035590 chr2L 1035635 1035667 4 77 15.5 16.0 15.8 0.2 109 chr2L 1035558 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-381 34 chr2L 1083701 1083712 chr2L 1083777 1083788 4 76 10.5 10.0 10.2 0.4 87 chr2L 1083701 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083744 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083788 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_4_1080001 chr2L_1080001 RAL-381 35 chr2L 1089967 1089998 chr2L 1090163 1090168 5 185 17.0 9.5 13.2 0.4 201 chr2L 1089967 intron CG4629 - chr2L 1090068 intron CG4629 - chr2L 1090168 intron CG4629 - chr2L_5_1090001 chr2L_1090001 RAL-381 36 chr2L 1156862 1156877 chr2L 1156963 1156963 5 100 8.0 3.5 5.8 0.7 101 chr2L 1156862 intron capt - chr2L 1156912 intron capt - chr2L 1156963 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-381 37 chr2L 1220130 1220160 chr2L 1227596 1227626 blood 11 7466 5.5 1.0 3.2 2.6 7496 chr2L 1220130 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-381 38 chr2L 1244413 1244434 chr2L 1244490 1244512 8 77 11.0 9.5 10.2 0.7 99 chr2L 1244413 intergenic not near genes chr2L 1244462 intergenic not near genes chr2L 1244512 intergenic not near genes chr2L_8_1240001 chr2L_1240001 RAL-381 39 chr2L 1291777 1291810 chr2L 1296220 1296253 7 4446 13.0 26.5 19.8 0.3 4476 chr2L 1291777 intron robo3 + chr2L 1294015 3` UTR robo3 + chr2L 1296253 3` UTR robo3 + chr2L_7_1290001 chr2L_1290001 RAL-381 40 chr2L 1322040 1322057 chr2L 1322118 1322137 6 79 8.5 11.0 9.8 0.6 97 chr2L 1322040 intergenic not near genes chr2L 1322088 intergenic not near genes chr2L 1322137 intergenic not near genes chr2L_6_1320001 chr2L_1320001 RAL-381 41 chr2L 1393989 1394020 chr2L 1394066 1394097 6 77 12.5 11.5 12.0 0.5 108 chr2L 1393989 intron lea - chr2L 1394043 intron lea - chr2L 1394097 intron lea - chr2L_6_1390001 chr2L_1390001 RAL-381 42 chr2L 1446605 1446626 chr2L 1446779 1446800 7 174 11.5 9.0 10.2 0.6 195 chr2L 1446605 intergenic not near genes chr2L 1446702 intergenic not near genes chr2L 1446800 intergenic not near genes chr2L_7_1445001 chr2L_1445001 RAL-381 43 chr2L 1508054 1508273 chr2L 1508137 1508359 4 82 9.5 8.5 9.0 0.4 305 chr2L 1508054 intergenic not near genes chr2L 1508206 intergenic not near genes chr2L 1508359 intergenic not near genes chr2L_4_1505001 chr2L_1505001 RAL-381 44 chr2L 1536502 1536522 chr2L 1536634 1536654 5 130 3.5 9.0 6.2 0.7 152 chr2L 1536502 intergenic not near genes chr2L 1536578 intergenic not near genes chr2L 1536654 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-381 45 chr2L 1570684 1570718 chr2L 1573556 1573590 F-element 11 2872 3.5 2.5 3.0 2.8 2906 chr2L 1570684 intron haf + chr2L 1572137 intron haf + chr2L 1573590 intron haf + chr2L_11_1570001 chr2L_1570001 RAL-381 46 chr2L 1579583 1579606 chr2L 1579664 1579687 6 81 9.5 3.5 6.5 0.8 104 chr2L 1579583 intron haf + chr2L 1579635 intron haf + chr2L 1579687 intron haf + chr2L_6_1575001 chr2L_1575001 RAL-381 47 chr2L 1596664 1596670 chr2L 1596730 1596754 4 80 8.5 10.0 9.2 0.4 90 chr2L 1596664 intron,intron haf +,CG31935 - chr2L 1596709 intron,intron haf +,CG31935 - chr2L 1596754 intron,intron haf +,CG31935 - chr2L_4_1595001 chr2L_1595001 RAL-381 48 chr2L 1678979 1679010 chr2L 1686442 1686475 blood 6 7464 0.5 4.0 2.2 1.9 7496 chr2L 1678979 intron chinmo + chr2L 1682727 intron chinmo + chr2L 1686475 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-381 49 chr2L 1711354 1711387 chr2L 1711678 1711711 mdg3 17 322 3.0 6.5 4.8 2.9 357 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_17_1710001 chr2L_1710001 RAL-381 50 chr2L 1721828 1721849 chr2L 1721912 1721933 5 83 9.0 14.0 11.5 0.4 105 chr2L 1721828 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721933 intron Rim2 - chr2L_5_1720001 chr2L_1720001 RAL-381 51 chr2L 1828401 1828430 chr2L 1828485 1828514 9 84 11.0 9.5 10.2 0.8 113 chr2L 1828401 intergenic not near genes chr2L 1828458 intergenic not near genes chr2L 1828514 intergenic not near genes chr2L_9_1825001 chr2L_1825001 RAL-381 52 chr2L 1883416 1883446 chr2L 1883999 1884026 5 580 1.0 2.0 1.5 2.0 610 chr2L 1883416 intron CG15358 - chr2L 1883721 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-381 53 chr2L 1910538 1910559 chr2L 1910627 1910648 6 88 12.0 11.5 11.8 0.5 110 chr2L 1910538 intron CG7337 + chr2L 1910593 intron CG7337 + chr2L 1910648 intron CG7337 + chr2L_6_1910001 chr2L_1910001 RAL-381 54 chr2L 1925489 1925500 chr2L 1925566 1925577 5 77 17.0 12.5 14.8 0.3 88 chr2L 1925489 intron CG7337 + chr2L 1925533 intron CG7337 + chr2L 1925577 intron CG7337 + chr2L_5_1925001 chr2L_1925001 RAL-381 55 chr2L 1948623 1948656 chr2L 1948730 1948763 4 107 0.0 1.0 0.5 2.7 140 chr2L 1948623 intergenic not near genes chr2L 1948693 intergenic not near genes chr2L 1948763 intergenic not near genes chr2L_4_1945001 chr2L_1945001 RAL-381 56 chr2L 1994584 1994610 chr2L 1994814 1994840 4 230 12.5 10.0 11.2 0.3 256 chr2L 1994584 intergenic not near genes chr2L 1994712 intergenic not near genes chr2L 1994840 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-381 57 chr2L 1996906 1996914 chr2L 1996988 1996996 4 81 2.0 1.5 1.8 1.4 90 chr2L 1996906 intergenic CG33543 - chr2L 1996951 intergenic CG33543 - chr2L 1996996 intergenic CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-381 58 chr2L 2045928 2045960 chr2L 2046008 2046040 5 79 13.0 10.0 11.5 0.4 112 chr2L 2045928 exon Kebab + chr2L 2045984 exon Kebab + chr2L 2046040 intron Kebab + chr2L_5_2045001 chr2L_2045001 RAL-381 59 chr2L 2100378 2100407 chr2L 2109526 2109558 roo 11 9150 5.5 3.5 4.5 2.0 9180 chr2L 2100378 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_11_2100001 chr2L_2100001 RAL-381 60 chr2L 2112121 2112144 chr2L 2119783 2119806 opus 8 7659 6.5 7.5 7.0 1.0 7685 chr2L 2112121 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119806 intergenic not near genes chr2L_8_2115001 chr2L_2115001 RAL-381 61 chr2L 2207673 2207696 chr2L 2207752 2207767 5 79 14.5 11.0 12.8 0.4 94 chr2L 2207673 exon CG33124 - chr2L 2207720 exon CG33124 - chr2L 2207767 exon CG33124 - chr2L_5_2205001 chr2L_2205001 RAL-381 62 chr2L 2250417 2250432 chr2L 2251184 2251184 5 764 7.5 0.5 4.0 1.0 767 chr2L 2250417 intergenic Ser12 - chr2L 2250800 exon Ser12 - chr2L 2251184 exon Ser12 - chr2L_5_2250001 chr2L_2250001 RAL-381 63 chr2L 2260608 2260835 chr2L 2260743 2260921 7 93 10.5 15.5 13.0 0.5 313 chr2L 2260608 intergenic not near genes chr2L 2260764 intergenic not near genes chr2L 2260921 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-381 64 chr2L 2294043 2294073 chr2L 2299244 2299278 copia 10 5202 0.5 3.0 1.8 3.6 5235 chr2L 2294043 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299278 intergenic not near genes chr2L_10_2295001 chr2L_2295001 RAL-381 65 chr2L 2299336 2299359 chr2L 2299414 2299437 7 78 1.5 6.0 3.8 1.5 101 chr2L 2299336 intergenic not near genes chr2L 2299386 intergenic not near genes chr2L 2299437 intergenic not near genes chr2L_7_2295001 chr2L_2295001 RAL-381 66 chr2L 2313432 2313462 chr2L 2313509 2313539 6 77 7.5 7.0 7.2 0.7 107 chr2L 2313432 intron,intron CG9967 -,eys + chr2L 2313486 intron,intron CG9967 -,eys + chr2L 2313539 intron,intron CG9967 -,eys + chr2L_6_2310001 chr2L_2310001 RAL-381 67 chr2L 2315044 2315065 chr2L 2315274 2315295 7 230 10.5 12.0 11.2 0.6 251 chr2L 2315044 intron,intron CG9967 -,eys + chr2L 2315170 intron,intron CG9967 -,eys + chr2L 2315295 intron,intron CG9967 -,eys + chr2L_7_2315001 chr2L_2315001 RAL-381 68 chr2L 2316886 2316905 chr2L 2316970 2316989 6 84 8.0 5.5 6.8 0.8 103 chr2L 2316886 intron,intron CG9967 -,eys + chr2L 2316938 intron,intron CG9967 -,eys + chr2L 2316989 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-381 69 chr2L 2341507 2341526 chr2L 2341732 2341751 5 224 11.5 4.0 7.8 0.6 244 chr2L 2341507 intron,intron CG9967 -,eys + chr2L 2341629 intron,intron CG9967 -,eys + chr2L 2341751 intron,intron CG9967 -,eys + chr2L_5_2340001 chr2L_2340001 RAL-381 70 chr2L 2503533 2503567 chr2L 2503629 2503663 10 94 2.0 3.0 2.5 2.9 130 chr2L 2503533 intergenic not near genes chr2L 2503598 intergenic not near genes chr2L 2503663 intergenic not near genes chr2L_10_2500001 chr2L_2500001 RAL-381 71 chr2L 2552736 2552768 chr2L 2552816 2552848 8 80 8.5 9.0 8.8 0.8 112 chr2L 2552736 exon CG3515 - chr2L 2552792 5` UTR CG3515 - chr2L 2552848 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-381 72 chr2L 2557834 2557847 chr2L 2557919 2557932 6 85 4.0 3.5 3.8 1.2 98 chr2L 2557834 intergenic not near genes chr2L 2557883 intergenic not near genes chr2L 2557932 intergenic not near genes chr2L_6_2555001 chr2L_2555001 RAL-381 73 chr2L 2565567 2565569 chr2L 2571631 2571637 297 4 6067 5.0 2.0 3.5 0.9 6070 chr2L 2565567 exon Cyp309a2 - chr2L 2568602 intron Cyp309a2 - chr2L 2571637 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-381 74 chr2L 2618034 2618069 chr2L 2618113 2618148 6 77 9.0 8.0 8.5 0.6 114 chr2L 2618034 intergenic not near genes chr2L 2618091 intergenic not near genes chr2L 2618148 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-381 75 chr2L 2653070 2653091 chr2L 2654694 2654714 10 1625 37.5 45.0 41.2 0.2 1644 chr2L 2653070 5` UTR Prosbeta4R1 + chr2L 2653892 3` UTR Prosbeta4R1 + chr2L 2654714 exon Or23a + chr2L_10_2650001 chr2L_2650001 RAL-381 76 chr2L 2661197 2661234 chr2L 2663034 2663070 I-element 15 1829 1.0 2.0 1.5 6.0 1873 chr2L 2661197 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663070 intergenic not near genes chr2L_15_2660001 chr2L_2660001 RAL-381 77 chr2L 2667623 2667658 chr2L 2667702 2667726 24 77 5.5 2.5 4.0 4.8 103 chr2L 2667623 intergenic not near genes chr2L 2667674 intergenic not near genes chr2L 2667726 intergenic not near genes chr2L_24_2665001 chr2L_2665001 RAL-381 78 chr2L 2678660 2678681 chr2L 2678744 2678765 7 84 6.0 7.5 6.8 0.9 105 chr2L 2678660 intron CG31690 + chr2L 2678712 intron CG31690 + chr2L 2678765 intron CG31690 + chr2L_7_2675001 chr2L_2675001 RAL-381 79 chr2L 2772612 2772625 chr2L 2779194 2779207 297 5 6582 3.5 3.5 3.5 1.1 6595 chr2L 2772612 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779207 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-381 80 chr2L 2793941 2793976 chr2L 2794021 2794051 9 77 11.0 11.0 11.0 0.8 110 chr2L 2793941 intron Syt1 - chr2L 2793996 intron Syt1 - chr2L 2794051 intron Syt1 - chr2L_9_2790001 chr2L_2790001 RAL-381 81 chr2L 2937419 2937445 chr2L 2937496 2937522 5 77 6.5 6.0 6.2 0.7 103 chr2L 2937419 intron lilli + chr2L 2937470 intron lilli + chr2L 2937522 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-381 82 chr2L 2975640 2975647 chr2L 2978946 2978982 13 3311 37.5 26.5 32.0 0.4 3342 chr2L 2975640 exon CG9641 - chr2L 2977311 exon CG3165 + chr2L 2978982 exon CG9643 - chr2L_13_2975001 chr2L_2975001 RAL-381 83 chr2L 3073015 3073029 chr2L 3078238 3078252 copia 5 5223 3.5 5.5 4.5 0.9 5237 chr2L 3073015 intron toc - chr2L 3075634 intron toc - chr2L 3078252 intron toc - chr2L_5_3075001 chr2L_3075001 RAL-381 84 chr2L 3073032 3073056 chr2L 3078235 3078259 copia 6 5206 1.0 4.5 2.8 1.6 5227 chr2L 3073032 intron toc - chr2L 3075646 intron toc - chr2L 3078259 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-381 85 chr2L 3108872 3108899 chr2L 3108949 3108976 8 77 3.0 1.5 2.2 2.5 104 chr2L 3108872 intron toc - chr2L 3108924 intron toc - chr2L 3108976 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-381 86 chr2L 3113432 3113449 chr2L 3113510 3113544 4 87 9.5 9.0 9.2 0.4 112 chr2L 3113432 intron toc - chr2L 3113488 intron toc - chr2L 3113544 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-381 87 chr2L 3147273 3147308 chr2L 3147350 3147385 5 72 18.0 18.0 18.0 0.3 112 chr2L 3147273 3` UTR Mad - chr2L 3147329 3` UTR Mad - chr2L 3147385 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 RAL-381 88 chr2L 3192214 3192242 chr2L 3192318 3192353 19 107 4.0 4.5 4.2 3.7 139 chr2L 3192214 exon CG34393 - chr2L 3192284 intron CG34393 - chr2L 3192353 intron CG34393 - chr2L_19_3190001 chr2L_3190001 RAL-381 89 chr2L 3235699 3235730 chr2L 3236377 3236408 5 677 4.0 11.0 7.5 0.6 709 chr2L 3235699 intergenic not near genes chr2L 3236054 intergenic not near genes chr2L 3236408 intergenic not near genes chr2L_5_3235001 chr2L_3235001 RAL-381 90 chr2L 3251501 3251523 chr2L 3259066 3259088 springer 8 7564 7.0 6.0 6.5 1.1 7587 chr2L 3251501 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259088 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-381 91 chr2L 3271150 3271182 chr2L 3271272 3271288 6 119 13.5 9.5 11.5 0.5 138 chr2L 3271150 exon CG3347 + chr2L 3271219 exon CG3347 + chr2L 3271288 exon CG3347 + chr2L_6_3270001 chr2L_3270001 RAL-381 92 chr2L 3284369 3284402 chr2L 3284449 3284482 6 80 10.5 12.0 11.2 0.5 113 chr2L 3284369 intergenic not near genes chr2L 3284426 intergenic not near genes chr2L 3284482 intergenic not near genes chr2L_6_3280001 chr2L_3280001 RAL-381 93 chr2L 3347408 3347431 chr2L 3347481 3347507 5 75 11.5 10.5 11.0 0.4 99 chr2L 3347408 intron E23 - chr2L 3347458 intron E23 - chr2L 3347507 intron E23 - chr2L_5_3345001 chr2L_3345001 RAL-381 94 chr2L 3355442 3355462 chr2L 3355521 3355541 8 78 14.0 16.5 15.2 0.5 99 chr2L 3355442 intergenic not near genes chr2L 3355492 intergenic not near genes chr2L 3355541 intergenic not near genes chr2L_8_3355001 chr2L_3355001 RAL-381 95 chr2L 3401867 3401895 chr2L 3401959 3401987 6 92 8.5 3.0 5.8 0.9 120 chr2L 3401867 intergenic not near genes chr2L 3401927 intergenic not near genes chr2L 3401987 intergenic not near genes chr2L_6_3400001 chr2L_3400001 RAL-381 96 chr2L 3439421 3439444 chr2L 3439508 3439531 4 85 13.0 10.5 11.8 0.3 110 chr2L 3439421 intergenic not near genes chr2L 3439476 intergenic not near genes chr2L 3439531 intergenic not near genes chr2L_4_3435001 chr2L_3435001 RAL-381 97 chr2L 3496031 3496051 chr2L 3496112 3496132 5 81 11.0 10.0 10.5 0.4 101 chr2L 3496031 intron tim - chr2L 3496082 intron tim - chr2L 3496132 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-381 98 chr2L 3498723 3498748 chr2L 3498799 3498825 5 77 7.5 8.0 7.8 0.6 102 chr2L 3498723 intron tim - chr2L 3498774 intron tim - chr2L 3498825 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-381 99 chr2L 3508352 3508371 chr2L 3508430 3508449 4 78 6.0 8.5 7.2 0.5 97 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508449 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-381 100 chr2L 3523033 3523055 chr2L 3523146 3523149 10 110 1.0 3.5 2.2 3.1 116 chr2L 3523033 exon Sr-CIV - chr2L 3523091 intron Sr-CIV - chr2L 3523149 exon Sr-CIV - chr2L_10_3520001 chr2L_3520001 RAL-381 101 chr2L 3634104 3634131 chr2L 3634186 3634213 4 82 6.5 13.0 9.8 0.4 109 chr2L 3634104 intron for - chr2L 3634158 intron for - chr2L 3634213 intron for - chr2L_4_3630001 chr2L_3630001 RAL-381 102 chr2L 3649786 3649819 chr2L 3654989 3655022 copia 8 5202 2.0 3.0 2.5 2.3 5236 chr2L 3649786 intron for - chr2L 3652404 intron for - chr2L 3655022 intron for - chr2L_8_3650001 chr2L_3650001 RAL-381 103 chr2L 3663305 3663339 chr2L 3663384 3663418 12 78 4.5 3.5 4.0 2.4 113 chr2L 3663305 5` UTR CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663418 intron CG34340 + chr2L_12_3660001 chr2L_3660001 RAL-381 104 chr2L 3702909 3702927 chr2L 3702995 3703013 4 86 1.5 0.5 1.0 2.0 104 chr2L 3702909 5` UTR CR44311 + chr2L 3702961 intergenic CR44311 + chr2L 3703013 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-381 105 chr2L 3785607 3785632 chr2L 3786378 3786406 5 768 5.5 11.5 8.5 0.5 799 chr2L 3785607 3` UTR CG31960 + chr2L 3786006 exon CG31958 + chr2L 3786406 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-381 106 chr2L 3811004 3811039 chr2L 3811092 3811127 8 84 12.0 7.5 9.8 0.7 123 chr2L 3811004 exon CG3407 - chr2L 3811066 exon CG3407 - chr2L 3811127 exon CG3407 - chr2L_8_3810001 chr2L_3810001 RAL-381 107 chr2L 3819033 3819062 chr2L 3819115 3819144 12 82 3.0 0.5 1.8 4.3 111 chr2L 3819033 intergenic CR44077 + chr2L 3819088 intergenic not near genes chr2L 3819144 intergenic not near genes chr2L_12_3815001 chr2L_3815001 RAL-381 108 chr2L 3936631 3936849 chr2L 3936708 3936941 5 89 15.0 3.5 9.2 0.5 310 chr2L 3936631 intron fred - chr2L 3936786 intron fred - chr2L 3936941 intron fred - chr2L_5_3935001 chr2L_3935001 RAL-381 109 chr2L 3948057 3948079 chr2L 3948144 3948156 4 85 10.0 11.0 10.5 0.3 99 chr2L 3948057 intron fred - chr2L 3948106 intron fred - chr2L 3948156 intron fred - chr2L_4_3945001 chr2L_3945001 RAL-381 110 chr2L 3965510 3965540 chr2L 3965610 3965612 8 95 11.5 12.5 12.0 0.6 102 chr2L 3965510 intron fred - chr2L 3965561 intron fred - chr2L 3965612 intron fred - chr2L_8_3965001 chr2L_3965001 RAL-381 111 chr2L 3999186 3999197 chr2L 3999269 3999280 4 83 12.5 10.5 11.5 0.3 94 chr2L 3999186 intergenic not near genes chr2L 3999233 intergenic not near genes chr2L 3999280 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-381 112 chr2L 3999200 3999210 chr2L 3999267 3999293 4 78 13.0 10.0 11.5 0.3 93 chr2L 3999200 intergenic not near genes chr2L 3999246 intergenic not near genes chr2L 3999293 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-381 113 chr2L 4008275 4008298 chr2L 4008360 4008383 5 85 0.0 4.5 2.2 1.6 108 chr2L 4008275 intergenic CG43773 +,CG43774 + chr2L 4008329 intergenic CG43774 +,CG43773 + chr2L 4008383 intergenic CG43774 +,CG43773 + chr2L_5_4005001 chr2L_4005001 RAL-381 114 chr2L 4048892 4048919 chr2L 4048981 4049008 4 90 4.0 6.5 5.2 0.6 116 chr2L 4048892 intron ed + chr2L 4048950 intron ed + chr2L 4049008 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-381 115 chr2L 4060166 4060199 chr2L 4060242 4060275 4 76 3.0 5.5 4.2 0.8 109 chr2L 4060166 intron ed + chr2L 4060220 intron ed + chr2L 4060275 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-381 116 chr2L 4066056 4066062 chr2L 4068862 4068887 Juan 6 2821 2.5 5.0 3.8 1.2 2831 chr2L 4066056 intron ed + chr2L 4067472 intron ed + chr2L 4068887 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-381 117 chr2L 4143721 4143738 chr2L 4143988 4144012 5 270 5.5 10.5 8.0 0.6 291 chr2L 4143721 intergenic not near genes chr2L 4143866 intergenic not near genes chr2L 4144012 intergenic not near genes chr2L_5_4140001 chr2L_4140001 RAL-381 118 chr2L 4150633 4150658 chr2L 4150703 4150710 6 69 10.0 13.5 11.8 0.5 77 chr2L 4150633 exon CG2955 + chr2L 4150672 exon CG2955 + chr2L 4150710 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-381 119 chr2L 4166381 4166404 chr2L 4166464 4166487 5 83 15.0 19.5 17.2 0.3 106 chr2L 4166381 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166487 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-381 120 chr2L 4171519 4171530 chr2L 4171594 4171605 4 75 11.0 11.0 11.0 0.3 86 chr2L 4171519 intergenic not near genes chr2L 4171562 intergenic not near genes chr2L 4171605 intergenic not near genes chr2L_4_4170001 chr2L_4170001 RAL-381 121 chr2L 4181293 4181305 chr2L 4183926 4183937 Burdock 7 2632 2.0 5.0 3.5 1.6 2644 chr2L 4181293 intergenic not near genes chr2L 4182615 intergenic not near genes chr2L 4183937 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-381 122 chr2L 4184494 4184506 chr2L 4184813 4184825 4 319 1.0 2.0 1.5 1.6 331 chr2L 4184494 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184825 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-381 123 chr2L 4285715 4285739 chr2L 4285788 4285807 5 73 15.0 15.0 15.0 0.3 92 chr2L 4285715 intron tutl + chr2L 4285761 intron tutl + chr2L 4285807 intron tutl + chr2L_5_4285001 chr2L_4285001 RAL-381 124 chr2L 4293928 4293945 chr2L 4294005 4294007 5 80 13.0 12.5 12.8 0.4 79 chr2L 4293928 intron tutl + chr2L 4293968 intron tutl + chr2L 4294007 intron tutl + chr2L_5_4290001 chr2L_4290001 RAL-381 125 chr2L 4317881 4317912 chr2L 4317957 4317990 19 75 4.5 9.0 6.8 2.4 109 chr2L 4317881 intron tutl + chr2L 4317936 intron tutl + chr2L 4317990 intron tutl + chr2L_19_4315001 chr2L_4315001 RAL-381 126 chr2L 4316913 4316940 chr2L 4324205 4324232 7 7294 28.5 26.5 27.5 0.2 7319 chr2L 4316913 intron tutl + chr2L 4320572 3` UTR tutl + chr2L 4324232 intergenic CG16857 +,tutl + chr2L_7_4320001 chr2L_4320001 RAL-381 127 chr2L 4351472 4351499 chr2L 4351548 4351575 9 72 11.5 13.5 12.5 0.7 103 chr2L 4351472 intergenic CR44700 + chr2L 4351524 intergenic CR44700 + chr2L 4351575 intergenic CR44700 + chr2L_9_4350001 chr2L_4350001 RAL-381 128 chr2L 4439000 4439035 chr2L 4439086 4439121 10 85 8.5 10.5 9.5 1.0 121 chr2L 4439000 intron CG15431 - chr2L 4439060 intron CG15431 - chr2L 4439121 5` UTR CG15431 - chr2L_10_4435001 chr2L_4435001 RAL-381 129 chr2L 4477135 4477165 chr2L 4477328 4477358 10 195 31.5 22.5 27.0 0.4 223 chr2L 4477135 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477358 intergenic dp -,ine - chr2L_10_4475001 chr2L_4475001 RAL-381 130 chr2L 4487260 4487272 chr2L 4487360 4487372 4 100 6.0 11.5 8.8 0.4 112 chr2L 4487260 intron dp - chr2L 4487316 intron dp - chr2L 4487372 intron dp - chr2L_4_4485001 chr2L_4485001 RAL-381 131 chr2L 4601706 4601727 chr2L 4609147 4609168 mdg1 9 7440 6.5 7.0 6.8 1.2 7462 chr2L 4601706 intron dp - chr2L 4605437 intron dp - chr2L 4609168 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-381 132 chr2L 4601728 4601733 chr2L 4609146 4609174 mdg1 4 7435 4.5 7.0 5.8 0.6 7446 chr2L 4601728 intron dp - chr2L 4605451 intron dp - chr2L 4609174 intron dp - chr2L_4_4605001 chr2L_4605001 RAL-381 133 chr2L 4623006 4623027 chr2L 4624796 4624818 5 1789 28.0 17.5 22.8 0.2 1812 chr2L 4623006 intergenic not near genes chr2L 4623912 intergenic not near genes chr2L 4624818 intergenic not near genes chr2L_5_4620001 chr2L_4620001 RAL-381 134 chr2L 4622518 4622537 chr2L 4624799 4624819 4 2282 22.0 17.0 19.5 0.2 2301 chr2L 4622518 intergenic not near genes chr2L 4623668 intergenic not near genes chr2L 4624819 intergenic not near genes chr2L_4_4620001 chr2L_4620001 RAL-381 135 chr2L 4634340 4634360 chr2L 4634434 4634454 6 92 10.0 9.0 9.5 0.6 114 chr2L 4634340 3` UTR CR45452 - chr2L 4634397 intergenic CR45452 - chr2L 4634454 intergenic CR45452 - chr2L_6_4630001 chr2L_4630001 RAL-381 136 chr2L 4672077 4672106 chr2L 4672154 4672183 9 77 7.5 11.5 9.5 0.9 106 chr2L 4672077 intergenic not near genes chr2L 4672130 intergenic not near genes chr2L 4672183 intergenic not near genes chr2L_9_4670001 chr2L_4670001 RAL-381 137 chr2L 4784053 4784067 chr2L 4784155 4784169 4 102 10.5 15.0 12.8 0.3 116 chr2L 4784053 intron CG15630 - chr2L 4784111 intron CG15630 - chr2L 4784169 intron CG15630 - chr2L_4_4780001 chr2L_4780001 RAL-381 138 chr2L 4809665 4809694 chr2L 4809743 4809772 4 78 2.5 4.0 3.2 1.0 107 chr2L 4809665 intergenic not near genes chr2L 4809718 intergenic not near genes chr2L 4809772 intergenic not near genes chr2L_4_4805001 chr2L_4805001 RAL-381 139 chr2L 4841085 4841104 chr2L 4841156 4841180 5 75 13.0 18.0 15.5 0.3 95 chr2L 4841085 intron CG12194 + chr2L 4841132 intron CG12194 + chr2L 4841180 exon CG12194 + chr2L_5_4840001 chr2L_4840001 RAL-381 140 chr2L 4846270 4846295 chr2L 4846369 4846389 4 98 7.0 10.5 8.8 0.4 119 chr2L 4846270 intron mxt - chr2L 4846330 intron mxt - chr2L 4846389 intron mxt - chr2L_4_4845001 chr2L_4845001 RAL-381 141 chr2L 4858454 4858475 chr2L 4858553 4858574 9 98 1.0 2.0 1.5 3.6 120 chr2L 4858454 intron pog + chr2L 4858514 intron pog + chr2L 4858574 intron pog + chr2L_9_4855001 chr2L_4855001 RAL-381 142 chr2L 4867721 4867727 chr2L 4867893 4867898 4 171 12.0 6.5 9.2 0.4 177 chr2L 4867721 intron pog + chr2L 4867810 intron pog + chr2L 4867898 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-381 143 chr2L 4869472 4869497 chr2L 4869552 4869577 4 77 7.0 10.0 8.5 0.4 105 chr2L 4869472 intron pog + chr2L 4869524 intron pog + chr2L 4869577 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-381 144 chr2L 4932765 4932779 chr2L 4933015 4933029 4 249 2.5 1.0 1.8 1.4 264 chr2L 4932765 intergenic hoe2 -,hoe1 - chr2L 4932897 intergenic hoe2 - chr2L 4933029 intergenic hoe2 - chr2L_4_4930001 chr2L_4930001 RAL-381 145 chr2L 4953512 4953539 chr2L 4953753 4953780 pogo 9 241 5.0 1.0 3.0 2.2 268 chr2L 4953512 intergenic Jon25Bii - chr2L 4953646 intergenic not near genes chr2L 4953780 intergenic Jon25Bi - chr2L_9_4950001 chr2L_4950001 RAL-381 146 chr2L 4996095 4996117 chr2L 4996172 4996194 4 77 2.0 1.5 1.8 1.4 99 chr2L 4996095 intron Rtnl1 - chr2L 4996144 intron Rtnl1 - chr2L 4996194 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-381 147 chr2L 5011901 5011929 chr2L 5011978 5012006 9 76 11.0 11.5 11.2 0.7 105 chr2L 5011901 3` UTR CG3887 + chr2L 5011954 3` UTR CG3887 + chr2L 5012006 3` UTR CG3887 + chr2L_9_5010001 chr2L_5010001 RAL-381 148 chr2L 5021721 5021730 chr2L 5021797 5021806 5 76 13.5 7.0 10.2 0.4 85 chr2L 5021721 intron vkg - chr2L 5021764 intron vkg - chr2L 5021806 intron vkg - chr2L_5_5020001 chr2L_5020001 RAL-381 149 chr2L 5120975 5121006 chr2L 5121068 5121100 7 94 16.5 12.5 14.5 0.5 125 chr2L 5120975 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-381 150 chr2L 5147737 5147756 chr2L 5147969 5147988 6 229 8.5 9.0 8.8 0.6 251 chr2L 5147737 intron Msp300 + chr2L 5147862 intron Msp300 + chr2L 5147988 intron Msp300 + chr2L_6_5145001 chr2L_5145001 RAL-381 151 chr2L 5242935 5242936 chr2L 16217660 16217660 7 10974724 31.0 32.0 31.5 0.2 10974725 chr2L 5242935 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_7_10730001 chr2L_10730001 RAL-381 152 chr2L 5297735 5297750 chr2L 5297819 5297824 6 82 15.0 14.5 14.8 0.4 89 chr2L 5297735 intron,3` UTR vri +,CR45730 - chr2L 5297780 intron,3` UTR vri +,CR45730 - chr2L 5297824 intron,3` UTR vri +,CR45730 - chr2L_6_5295001 chr2L_5295001 RAL-381 153 chr2L 5458375 5458402 chr2L 5458459 5458484 10 81 7.5 5.0 6.2 1.4 109 chr2L 5458375 intergenic not near genes chr2L 5458430 intergenic not near genes chr2L 5458484 intergenic not near genes chr2L_10_5455001 chr2L_5455001 RAL-381 154 chr2L 5459831 5459848 chr2L 5459917 5459930 5 85 12.0 11.5 11.8 0.4 99 chr2L 5459831 intergenic not near genes chr2L 5459880 intergenic not near genes chr2L 5459930 intergenic not near genes chr2L_5_5455001 chr2L_5455001 RAL-381 155 chr2L 5468705 5468725 chr2L 5468787 5468807 4 82 10.0 12.5 11.2 0.3 102 chr2L 5468705 intergenic not near genes chr2L 5468756 intergenic not near genes chr2L 5468807 intergenic not near genes chr2L_4_5465001 chr2L_5465001 RAL-381 156 chr2L 5665066 5665092 chr2L 5665179 5665205 5 113 15.5 16.5 16.0 0.3 139 chr2L 5665066 intron Hsp60C + chr2L 5665136 intron Hsp60C + chr2L 5665205 intron Hsp60C + chr2L_5_5665001 chr2L_5665001 RAL-381 157 chr2L 5672178 5672204 chr2L 5672256 5672285 6 80 1.5 3.0 2.2 1.9 107 chr2L 5672178 intergenic not near genes chr2L 5672232 intergenic not near genes chr2L 5672285 intergenic not near genes chr2L_6_5670001 chr2L_5670001 RAL-381 158 chr2L 5703667 5703690 chr2L 5703904 5703924 6 237 14.5 11.5 13.0 0.4 257 chr2L 5703667 intergenic not near genes chr2L 5703796 intergenic not near genes chr2L 5703924 intergenic not near genes chr2L_6_5700001 chr2L_5700001 RAL-381 159 chr2L 5739881 5739902 chr2L 5740111 5740114 7 234 12.5 10.5 11.5 0.6 233 chr2L 5739881 intron,intron CG11030 +,CG11147 - chr2L 5739998 intron,intron CG11030 +,CG11147 - chr2L 5740114 intron,intron CG11030 +,CG11147 - chr2L_7_5740001 chr2L_5740001 RAL-381 160 chr2L 5750735 5750767 chr2L 5750899 5750931 7 163 9.0 15.0 12.0 0.5 196 chr2L 5750735 intron CG11030 + chr2L 5750833 intron CG11030 + chr2L 5750931 intron CG11030 + chr2L_7_5750001 chr2L_5750001 RAL-381 161 chr2L 5811075 5811102 chr2L 5811159 5811172 8 82 8.5 9.5 9.0 0.8 97 chr2L 5811075 intergenic CR44576 +,CG43307 + chr2L 5811124 intergenic CR44576 +,CG43307 + chr2L 5811172 intergenic CR44576 +,CG43307 + chr2L_8_5810001 chr2L_5810001 RAL-381 162 chr2L 5819681 5819700 chr2L 5819765 5819784 5 84 3.5 9.0 6.2 0.7 103 chr2L 5819681 intergenic not near genes chr2L 5819732 intergenic not near genes chr2L 5819784 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-381 163 chr2L 5827713 5827741 chr2L 5836720 5836749 roo 11 9008 4.5 4.0 4.2 2.1 9036 chr2L 5827713 intron TrissinR + chr2L 5832231 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_11_5830001 chr2L_5830001 RAL-381 164 chr2L 5839094 5839106 chr2L 5839174 5839186 5 80 17.0 12.0 14.5 0.3 92 chr2L 5839094 intron TrissinR + chr2L 5839140 intron TrissinR + chr2L 5839186 intron TrissinR + chr2L_5_5835001 chr2L_5835001 RAL-381 165 chr2L 5853718 5853744 chr2L 5853803 5853829 12 83 10.5 10.0 10.2 1.1 111 chr2L 5853718 intron TrissinR + chr2L 5853774 intron TrissinR + chr2L 5853829 intron TrissinR + chr2L_12_5850001 chr2L_5850001 RAL-381 166 chr2L 5857385 5857410 chr2L 5857479 5857503 4 94 7.0 2.5 4.8 0.7 118 chr2L 5857385 intergenic not near genes chr2L 5857444 intergenic not near genes chr2L 5857503 intergenic not near genes chr2L_4_5855001 chr2L_5855001 RAL-381 167 chr2L 5878752 5878786 chr2L 5878828 5878862 14 74 12.0 12.0 12.0 1.1 110 chr2L 5878752 intron rau - chr2L 5878807 intron rau - chr2L 5878862 intron rau - chr2L_14_5875001 chr2L_5875001 RAL-381 168 chr2L 5897592 5897626 chr2L 5897675 5897709 10 81 24.5 23.0 23.8 0.4 117 chr2L 5897592 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897709 intergenic not near genes chr2L_10_5895001 chr2L_5895001 RAL-381 169 chr2L 5989032 5989061 chr2L 5989108 5989137 6 76 10.0 6.5 8.2 0.7 105 chr2L 5989032 intergenic ifc +,lid - chr2L 5989084 intergenic ifc +,lid - chr2L 5989137 intergenic lid -,ifc + chr2L_6_5985001 chr2L_5985001 RAL-381 170 chr2L 5993343 5993361 chr2L 5993434 5993452 6 91 11.5 15.5 13.5 0.4 109 chr2L 5993343 exon lid - chr2L 5993398 intron lid - chr2L 5993452 intron lid - chr2L_6_5990001 chr2L_5990001 RAL-381 171 chr2L 6021624 6021651 chr2L 6021699 6021718 10 76 14.5 14.0 14.2 0.7 94 chr2L 6021624 exon CG13996 + chr2L 6021671 exon CG13996 + chr2L 6021718 3` UTR CG13996 + chr2L_10_6020001 chr2L_6020001 RAL-381 172 chr2L 6240571 6240580 chr2L 6240648 6240657 4 77 11.0 10.0 10.5 0.3 86 chr2L 6240571 intergenic not near genes chr2L 6240614 intergenic not near genes chr2L 6240657 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-381 173 chr2L 6283965 6283975 chr2L 6284053 6284085 5 106 1.0 1.5 1.2 2.3 120 chr2L 6283965 intron Ddr + chr2L 6284025 intron Ddr + chr2L 6284085 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-381 174 chr2L 6308310 6308334 chr2L 6308393 6308417 4 83 6.0 9.0 7.5 0.5 107 chr2L 6308310 intron Ddr + chr2L 6308364 intron Ddr + chr2L 6308417 intron,3` UTR Ddr +,CG43922 - chr2L_4_6305001 chr2L_6305001 RAL-381 175 chr2L 6363148 6363183 chr2L 6366070 6366105 Burdock 15 2918 2.0 5.0 3.5 3.3 2957 chr2L 6363148 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366105 intergenic not near genes chr2L_15_6360001 chr2L_6360001 RAL-381 176 chr2L 6370516 6370548 chr2L 6370602 6370634 6 85 9.0 11.5 10.2 0.5 118 chr2L 6370516 intergenic CG9505 + chr2L 6370575 intergenic CG9505 + chr2L 6370634 intergenic CG9505 + chr2L_6_6370001 chr2L_6370001 RAL-381 177 chr2L 6380066 6380094 chr2L 6380147 6380175 5 81 14.0 11.0 12.5 0.4 109 chr2L 6380066 intron CG42368 - chr2L 6380120 intron CG42368 - chr2L 6380175 intron CG42368 - chr2L_5_6380001 chr2L_6380001 RAL-381 178 chr2L 6396822 6396851 chr2L 6397026 6397034 4 196 3.0 9.0 6.0 0.6 212 chr2L 6396822 intron,exon CG42368 -,CG42369 - chr2L 6396928 intron,exon CG42368 -,CG42369 - chr2L 6397034 intron,exon CG42368 -,CG42369 - chr2L_4_6395001 chr2L_6395001 RAL-381 179 chr2L 6413929 6413946 chr2L 6414013 6414027 4 82 10.5 7.0 8.8 0.4 98 chr2L 6413929 exon CG13982 + chr2L 6413978 exon CG13982 + chr2L 6414027 exon CG13982 + chr2L_4_6410001 chr2L_6410001 RAL-381 180 chr2L 6426857 6426888 chr2L 6445117 6445148 roo 12 18259 2.5 6.5 4.5 2.2 18291 chr2L 6426857 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-381 181 chr2L 6544371 6544395 chr2L 6544462 6544487 11 91 4.0 2.0 3.0 2.8 116 chr2L 6544371 intron eya - chr2L 6544429 intron eya - chr2L 6544487 intron eya - chr2L_11_6540001 chr2L_6540001 RAL-381 182 chr2L 6564844 6564878 chr2L 6564937 6564956 4 88 2.0 0.5 1.2 1.8 112 chr2L 6564844 3` UTR CG13766 - chr2L 6564900 3` UTR CG13766 - chr2L 6564956 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-381 183 chr2L 6626885 6626917 chr2L 6626970 6627002 6 85 13.5 12.0 12.8 0.4 117 chr2L 6626885 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627002 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-381 184 chr2L 6640905 6640939 chr2L 6641000 6641034 7 95 17.0 14.5 15.8 0.4 129 chr2L 6640905 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641034 intron CG31635 - chr2L_7_6640001 chr2L_6640001 RAL-381 185 chr2L 6655526 6655547 chr2L 6655888 6655908 6 359 17.5 14.0 15.8 0.4 382 chr2L 6655526 exon CG31633 - chr2L 6655717 exon CG31633 - chr2L 6655908 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-381 186 chr2L 6772590 6772597 chr2L 6772667 6772679 4 81 10.0 7.5 8.8 0.4 89 chr2L 6772590 5` UTR CG11321 - chr2L 6772634 5` UTR CG11321 - chr2L 6772679 5` UTR CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-381 187 chr2L 6799540 6799572 chr2L 6799628 6799660 7 88 7.0 5.5 6.2 1.0 120 chr2L 6799540 5` UTR CR43610 + chr2L 6799600 5` UTR CR43610 + chr2L 6799660 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-381 188 chr2L 6850377 6850410 chr2L 6850460 6850493 6 83 3.0 3.0 3.0 1.5 116 chr2L 6850377 intergenic not near genes chr2L 6850435 intergenic not near genes chr2L 6850493 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-381 189 chr2L 6950158 6950192 chr2L 6950363 6950397 17 204 3.5 4.5 4.0 3.4 239 chr2L 6950158 5` UTR Gas41 - chr2L 6950278 intergenic Gas41 -,SA + chr2L 6950397 intergenic SA +,Gas41 - chr2L_17_6950001 chr2L_6950001 RAL-381 190 chr2L 7051152 7051159 chr2L 7051228 7051234 4 76 1.0 4.5 2.8 1.1 82 chr2L 7051152 intron milt + chr2L 7051193 intron milt + chr2L 7051234 intron milt + chr2L_4_7050001 chr2L_7050001 RAL-381 191 chr2L 7198004 7198019 chr2L 7198079 7198098 4 78 7.5 8.5 8.0 0.4 94 chr2L 7198004 intron CG4502 - chr2L 7198051 intron CG4502 - chr2L 7198098 intron CG4502 - chr2L_4_7195001 chr2L_7195001 RAL-381 192 chr2L 7201004 7201034 chr2L 7201085 7201115 7 81 10.0 11.5 10.8 0.6 111 chr2L 7201004 intron CG4502 - chr2L 7201060 intron CG4502 - chr2L 7201115 intron CG4502 - chr2L_7_7200001 chr2L_7200001 RAL-381 193 chr2L 7295995 7296025 chr2L 7296133 7296165 6 139 3.5 1.0 2.2 1.9 170 chr2L 7295995 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296165 intergenic not near genes chr2L_6_7295001 chr2L_7295001 RAL-381 194 chr2L 7301297 7301317 chr2L 7301380 7301400 6 81 11.5 12.0 11.8 0.5 103 chr2L 7301297 intergenic not near genes chr2L 7301348 intergenic not near genes chr2L 7301400 intergenic not near genes chr2L_6_7300001 chr2L_7300001 RAL-381 195 chr2L 7322938 7322949 chr2L 7323071 7323085 6 135 7.5 10.5 9.0 0.6 147 chr2L 7322938 intergenic not near genes chr2L 7323012 intergenic not near genes chr2L 7323085 intergenic not near genes chr2L_6_7320001 chr2L_7320001 RAL-381 196 chr2L 7343323 7343359 chr2L 7350439 7350474 roo 6 7115 3.0 3.5 3.2 1.4 7151 chr2L 7343323 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-381 197 chr2L 7351058 7351079 chr2L 7351166 7351186 5 108 4.0 3.0 3.5 1.1 128 chr2L 7351058 intron Wnt6 + chr2L 7351122 intron Wnt6 + chr2L 7351186 exon Wnt6 + chr2L_5_7350001 chr2L_7350001 RAL-381 198 chr2L 7363530 7363551 chr2L 7363608 7363629 4 78 5.0 2.5 3.8 0.8 99 chr2L 7363530 5` UTR Wnt10 + chr2L 7363580 5` UTR Wnt10 + chr2L 7363629 5` UTR Wnt10 + chr2L_4_7360001 chr2L_7360001 RAL-381 199 chr2L 7405777 7405807 chr2L 7405855 7405887 5 80 2.0 1.0 1.5 2.0 110 chr2L 7405777 intron CG5177 + chr2L 7405832 intron CG5177 + chr2L 7405887 intron CG5177 + chr2L_5_7405001 chr2L_7405001 RAL-381 200 chr2L 7436201 7436218 chr2L 7436289 7436306 4 88 1.0 3.0 2.0 1.3 105 chr2L 7436201 intergenic not near genes chr2L 7436254 intergenic not near genes chr2L 7436306 intergenic not near genes chr2L_4_7435001 chr2L_7435001 RAL-381 201 chr2L 7449743 7449769 chr2L 7449820 7449846 4 77 6.5 5.0 5.8 0.6 103 chr2L 7449743 5` UTR santa-maria - chr2L 7449794 5` UTR santa-maria - chr2L 7449846 5` UTR santa-maria - chr2L_4_7445001 chr2L_7445001 RAL-381 202 chr2L 7567488 7567505 chr2L 7567562 7567562 7 73 5.5 1.5 3.5 1.6 74 chr2L 7567488 intron RapGAP1 - chr2L 7567525 intron RapGAP1 - chr2L 7567562 intron RapGAP1 - chr2L_7_7565001 chr2L_7565001 RAL-381 203 chr2L 7579201 7579228 chr2L 7579392 7579419 BS 6 190 1.0 1.0 1.0 3.0 218 chr2L 7579201 intergenic RapGAP1 - chr2L 7579310 intergenic RapGAP1 - chr2L 7579419 intergenic RapGAP1 - chr2L_6_7575001 chr2L_7575001 RAL-381 204 chr2L 7653048 7653066 chr2L 7653142 7653160 8 94 17.5 13.0 15.2 0.5 112 chr2L 7653048 intron Slob - chr2L 7653104 intron Slob - chr2L 7653160 intron Slob - chr2L_8_7650001 chr2L_7650001 RAL-381 205 chr2L 7922745 7922770 chr2L 7922826 7922851 5 81 11.0 10.0 10.5 0.4 106 chr2L 7922745 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922851 intron Snoo - chr2L_5_7920001 chr2L_7920001 RAL-381 206 chr2L 7977091 7977113 chr2L 7984067 7984089 297 7 6976 3.0 5.0 4.0 1.4 6998 chr2L 7977091 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984089 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-381 207 chr2L 8013614 8013637 chr2L 8018819 8018838 copia 6 5204 4.5 0.0 2.2 1.9 5224 chr2L 8013614 intron Tg + chr2L 8016226 intron Tg + chr2L 8018838 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-381 208 chr2L 8044101 8044130 chr2L 8044180 8044209 11 76 2.0 4.0 3.0 2.8 108 chr2L 8044101 intron CG7466 + chr2L 8044155 intron CG7466 + chr2L 8044209 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-381 209 chr2L 8166042 8166067 chr2L 8166132 8166137 4 85 14.5 14.0 14.2 0.3 95 chr2L 8166042 intron Piezo + chr2L 8166090 intron Piezo + chr2L 8166137 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-381 210 chr2L 8233732 8233758 chr2L 8234273 8234299 4 541 7.5 3.5 5.5 0.6 567 chr2L 8233732 intron Pvr - chr2L 8234016 intron Pvr - chr2L 8234299 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-381 211 chr2L 8238421 8238432 chr2L 8238499 8238510 4 78 12.5 7.0 9.8 0.4 89 chr2L 8238421 intron Pvr - chr2L 8238466 intron Pvr - chr2L 8238510 intron Pvr - chr2L_4_8235001 chr2L_8235001 RAL-381 212 chr2L 8270000 8270026 chr2L 8270082 8270108 13 82 11.5 15.5 13.5 0.9 108 chr2L 8270000 intron Btk29A - chr2L 8270054 intron Btk29A - chr2L 8270108 intron Btk29A - chr2L_13_8270001 chr2L_8270001 RAL-381 213 chr2L 8285025 8285037 chr2L 8285101 8285113 4 76 4.5 2.5 3.5 0.9 88 chr2L 8285025 intron Btk29A - chr2L 8285069 intron Btk29A - chr2L 8285113 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-381 214 chr2L 8286293 8286323 chr2L 8286380 8286388 5 82 12.0 11.0 11.5 0.4 95 chr2L 8286293 intron Btk29A - chr2L 8286340 intron Btk29A - chr2L 8286388 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-381 215 chr2L 8452431 8452445 chr2L 8461602 8461616 roo 5 9170 1.5 2.5 2.0 1.7 9185 chr2L 8452431 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461616 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-381 216 chr2L 8468809 8468825 chr2L 8469247 8469263 5 438 15.0 11.5 13.2 0.4 454 chr2L 8468809 intron d + chr2L 8469036 intron d + chr2L 8469263 intron d + chr2L_5_8465001 chr2L_8465001 RAL-381 217 chr2L 8498205 8498227 chr2L 8498286 8498305 5 80 8.0 6.5 7.2 0.6 100 chr2L 8498205 intron Dh31 - chr2L 8498255 intron Dh31 - chr2L 8498305 intron Dh31 - chr2L_5_8495001 chr2L_8495001 RAL-381 218 chr2L 8538123 8538153 chr2L 8538311 8538341 5 188 10.0 5.5 7.8 0.6 218 chr2L 8538123 intron CG17834 + chr2L 8538232 intron CG17834 + chr2L 8538341 intron CG17834 + chr2L_5_8535001 chr2L_8535001 RAL-381 219 chr2L 8554360 8554390 chr2L 8554456 8554486 7 96 4.0 2.5 3.2 1.7 126 chr2L 8554360 intron Sema-1a + chr2L 8554423 intron Sema-1a + chr2L 8554486 intron Sema-1a + chr2L_7_8550001 chr2L_8550001 RAL-381 220 chr2L 8587306 8587317 chr2L 8587382 8587392 6 77 4.5 9.0 6.8 0.8 86 chr2L 8587306 intron Sema-1a + chr2L 8587349 intron Sema-1a + chr2L 8587392 intron Sema-1a + chr2L_6_8585001 chr2L_8585001 RAL-381 221 chr2L 8593765 8593791 chr2L 8593861 8593887 4 96 4.0 2.5 3.2 1.0 122 chr2L 8593765 intron,intron Sema-1a +,CR43855 - chr2L 8593826 intron,intron Sema-1a +,CR43855 - chr2L 8593887 intron,intron Sema-1a +,CR43855 - chr2L_4_8590001 chr2L_8590001 RAL-381 222 chr2L 8594466 8594498 chr2L 8601520 8601552 297 4 7049 2.0 0.0 1.0 2.0 7086 chr2L 8594466 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598009 intron Sema-1a + chr2L 8601552 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-381 223 chr2L 8612817 8612835 chr2L 8613042 8613060 5 225 8.0 12.5 10.2 0.4 243 chr2L 8612817 intron Sema-1a + chr2L 8612938 intron Sema-1a + chr2L 8613060 intron Sema-1a + chr2L_5_8610001 chr2L_8610001 RAL-381 224 chr2L 8612856 8612862 chr2L 8612932 8612939 4 77 3.5 2.0 2.8 1.1 83 chr2L 8612856 intron Sema-1a + chr2L 8612898 intron Sema-1a + chr2L 8612939 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-381 225 chr2L 8695819 8695840 chr2L 8695972 8695993 5 153 7.5 8.5 8.0 0.6 174 chr2L 8695819 intron Hnf4 - chr2L 8695906 intron Hnf4 - chr2L 8695993 intron Hnf4 - chr2L_5_8695001 chr2L_8695001 RAL-381 226 chr2L 8723116 8723127 chr2L 8731493 8731502 Tirant 8 8377 4.5 3.0 3.8 1.7 8386 chr2L 8723116 intron raw - chr2L 8727309 intron raw - chr2L 8731502 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-381 227 chr2L 8723128 8723147 chr2L 8731490 8731524 Tirant 6 8374 4.0 3.0 3.5 1.3 8396 chr2L 8723128 intron raw - chr2L 8727326 intron raw - chr2L 8731524 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-381 228 chr2L 8742767 8742939 chr2L 8742843 8743017 6 76 3.0 5.0 4.0 1.2 250 chr2L 8742767 intergenic not near genes chr2L 8742892 intergenic not near genes chr2L 8743017 intergenic not near genes chr2L_6_8740001 chr2L_8740001 RAL-381 229 chr2L 8770590 8770615 chr2L 8770781 8770802 6 185 10.0 10.5 10.2 0.5 212 chr2L 8770590 exon CG9465 - chr2L 8770696 exon CG9465 - chr2L 8770802 exon CG9465 - chr2L_6_8770001 chr2L_8770001 RAL-381 230 chr2L 8795007 8795036 chr2L 8795096 8795124 8 88 3.5 2.0 2.8 2.1 117 chr2L 8795007 intergenic not near genes chr2L 8795066 intergenic not near genes chr2L 8795124 intergenic not near genes chr2L_8_8795001 chr2L_8795001 RAL-381 231 chr2L 8910740 8910746 chr2L 8910827 8910837 4 90 5.0 14.0 9.5 0.4 97 chr2L 8910740 intron CG34398 + chr2L 8910788 intron CG34398 + chr2L 8910837 intron CG34398 + chr2L_4_8910001 chr2L_8910001 RAL-381 232 chr2L 9000282 9000310 chr2L 9007792 9007820 roo 4 7510 4.5 1.0 2.8 1.1 7538 chr2L 9000282 intergenic Try29F + chr2L 9004051 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-381 233 chr2L 9040890 9040912 chr2L 9040963 9040987 6 74 12.0 10.0 11.0 0.5 97 chr2L 9040890 intergenic not near genes chr2L 9040938 intergenic not near genes chr2L 9040987 intergenic not near genes chr2L_6_9040001 chr2L_9040001 RAL-381 234 chr2L 9042583 9042588 chr2L 9042677 9042682 4 94 0.0 0.0 0.0 4.0 99 chr2L 9042583 intergenic not near genes chr2L 9042632 intergenic not near genes chr2L 9042682 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-381 235 chr2L 9084336 9084339 chr2L 16217660 16217660 19 7133322 21.5 32.0 26.8 0.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_19_12650001 chr2L_12650001 RAL-381 236 chr2L 9084340 9084340 chr2L 16217659 16217660 8 7133320 22.0 32.5 27.2 0.3 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-381 237 chr2L 9109698 9109725 chr2L 9109783 9109809 8 83 12.5 11.0 11.8 0.6 111 chr2L 9109698 intergenic not near genes chr2L 9109754 intergenic not near genes chr2L 9109809 intergenic not near genes chr2L_8_9105001 chr2L_9105001 RAL-381 238 chr2L 9156556 9156572 chr2L 9156634 9156645 5 77 18.5 13.0 15.8 0.3 89 chr2L 9156556 exon CG32982 + chr2L 9156600 intron CG32982 + chr2L 9156645 intron CG32982 + chr2L_5_9155001 chr2L_9155001 RAL-381 239 chr2L 9214244 9214260 chr2L 9214322 9214338 4 78 8.0 5.5 6.8 0.5 94 chr2L 9214244 intron tai + chr2L 9214291 intron tai + chr2L 9214338 intron tai + chr2L_4_9210001 chr2L_9210001 RAL-381 240 chr2L 9217976 9217995 chr2L 9222760 9222782 Doc 5 4786 1.5 2.5 2.0 1.7 4806 chr2L 9217976 intron tai + chr2L 9220379 intron tai + chr2L 9222782 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-381 241 chr2L 9270739 9270761 chr2L 9270834 9270836 6 91 17.5 14.0 15.8 0.4 97 chr2L 9270739 intron Ggamma30A + chr2L 9270788 intron Ggamma30A + chr2L 9270836 intron Ggamma30A + chr2L_6_9270001 chr2L_9270001 RAL-381 242 chr2L 9280011 9280017 chr2L 9280105 9280111 4 94 2.0 5.5 3.8 0.8 100 chr2L 9280011 intron Ggamma30A + chr2L 9280061 intron Ggamma30A + chr2L 9280111 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-381 243 chr2L 9287325 9287356 chr2L 9287422 9287453 7 96 15.0 10.0 12.5 0.5 128 chr2L 9287325 intron Ggamma30A + chr2L 9287389 intron Ggamma30A + chr2L 9287453 intron Ggamma30A + chr2L_7_9285001 chr2L_9285001 RAL-381 244 chr2L 9297379 9297404 chr2L 9297456 9297481 8 77 5.0 5.5 5.2 1.3 102 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297481 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-381 245 chr2L 9303482 9303548 chr2L 9303559 9303628 18 77 6.5 5.5 6.0 2.6 146 chr2L 9303482 intergenic not near genes chr2L 9303555 intergenic not near genes chr2L 9303628 intergenic not near genes chr2L_18_9300001 chr2L_9300001 RAL-381 246 chr2L 9391666 9391693 chr2L 9391753 9391780 4 87 8.5 9.0 8.8 0.4 114 chr2L 9391666 intron Shawl - chr2L 9391723 intron Shawl - chr2L 9391780 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-381 247 chr2L 9393499 9393531 chr2L 9396466 9396498 jockey 6 2965 1.5 3.5 2.5 1.7 2999 chr2L 9393499 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-381 248 chr2L 9446619 9446634 chr2L 9446724 9446739 6 105 3.0 9.0 6.0 0.9 120 chr2L 9446619 intron numb + chr2L 9446679 intron numb + chr2L 9446739 intron numb + chr2L_6_9445001 chr2L_9445001 RAL-381 249 chr2L 9490526 9490544 chr2L 9490606 9490621 6 78 6.0 6.5 6.2 0.8 95 chr2L 9490526 intergenic not near genes chr2L 9490574 intergenic not near genes chr2L 9490621 intergenic not near genes chr2L_6_9490001 chr2L_9490001 RAL-381 250 chr2L 9526849 9526872 chr2L 9526940 9526964 11 92 7.0 6.5 6.8 1.4 115 chr2L 9526849 intron Oatp30B + chr2L 9526906 intron Oatp30B + chr2L 9526964 intron Oatp30B + chr2L_11_9525001 chr2L_9525001 RAL-381 251 chr2L 9565849 9565879 chr2L 9565935 9565964 4 85 16.5 13.5 15.0 0.2 115 chr2L 9565849 intron jp - chr2L 9565906 intron jp - chr2L 9565964 intron jp - chr2L_4_9565001 chr2L_9565001 RAL-381 252 chr2L 9610108 9610144 chr2L 9610187 9610222 10 77 4.0 4.5 4.2 1.9 114 chr2L 9610108 intron gcm2 + chr2L 9610165 intron gcm2 + chr2L 9610222 intron gcm2 + chr2L_10_9610001 chr2L_9610001 RAL-381 253 chr2L 9618899 9618913 chr2L 9618976 9618990 5 77 4.5 4.5 4.5 0.9 91 chr2L 9618899 intron GlcAT-S + chr2L 9618944 intron GlcAT-S + chr2L 9618990 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-381 254 chr2L 9633829 9633858 chr2L 9633956 9633985 5 127 11.5 8.0 9.8 0.5 156 chr2L 9633829 intergenic Apoltp + chr2L 9633907 intergenic Apoltp + chr2L 9633985 intergenic Apoltp + chr2L_5_9630001 chr2L_9630001 RAL-381 255 chr2L 9663252 9663275 chr2L 9663344 9663350 4 88 10.0 10.5 10.2 0.4 98 chr2L 9663252 intergenic not near genes chr2L 9663301 intergenic not near genes chr2L 9663350 intergenic not near genes chr2L_4_9660001 chr2L_9660001 RAL-381 256 chr2L 9686346 9686375 chr2L 9686430 9686434 11 81 14.5 15.0 14.8 0.7 88 chr2L 9686346 intron Pka-C1 - chr2L 9686390 intron Pka-C1 - chr2L 9686434 intron Pka-C1 - chr2L_11_9685001 chr2L_9685001 RAL-381 257 chr2L 9767902 9767935 chr2L 9767978 9768014 4 78 8.5 8.5 8.5 0.4 112 chr2L 9767902 intron,exon ppk18 -,CG4017 + chr2L 9767958 intron,exon ppk18 -,CG4017 + chr2L 9768014 intron,exon ppk18 -,CG4017 + chr2L_4_9765001 chr2L_9765001 RAL-381 258 chr2L 9817208 9817239 chr2L 9817298 9817330 5 88 9.5 11.0 10.2 0.4 122 chr2L 9817208 intron nAChRalpha6 - chr2L 9817269 intron nAChRalpha6 - chr2L 9817330 intron nAChRalpha6 - chr2L_5_9815001 chr2L_9815001 RAL-381 259 chr2L 7203108 7203112 chr2L 9876827 9876845 4 2673724 9.0 11.5 10.2 0.4 2673737 chr2L 7203108 intron CG4502 - chr2L 8539976 intron CG17834 + chr2L 9876845 intron nAChRalpha6 - chr2L_4_8535001 chr2L_8535001 RAL-381 260 chr2L 9892502 9892534 chr2L 9892578 9892610 10 76 3.0 4.5 3.8 2.1 108 chr2L 9892502 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_10_9890001 chr2L_9890001 RAL-381 261 chr2L 9973725 9973759 chr2L 9980843 9980878 HMS-Beagle 15 7117 2.5 8.0 5.2 2.4 7153 chr2L 9973725 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_15_9975001 chr2L_9975001 RAL-381 262 chr2L 9986350 9986378 chr2L 9986444 9986472 5 92 11.5 13.5 12.5 0.4 122 chr2L 9986350 intron bib + chr2L 9986411 intron bib + chr2L 9986472 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-381 263 chr2L 10045417 10045437 chr2L 10045497 10045498 6 76 3.5 11.5 7.5 0.7 81 chr2L 10045417 intergenic not near genes chr2L 10045458 intergenic not near genes chr2L 10045498 intergenic not near genes chr2L_6_10045001 chr2L_10045001 RAL-381 264 chr2L 10051728 10051740 chr2L 10051813 10051825 4 84 9.5 5.0 7.2 0.5 97 chr2L 10051728 5` UTR CR44874 + chr2L 10051776 5` UTR CR44874 + chr2L 10051825 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-381 265 chr2L 10153214 10153237 chr2L 10153281 10153316 9 76 3.0 2.5 2.8 2.4 102 chr2L 10153214 intron,exon CG44153 -,CG4839 + chr2L 10153265 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-381 266 chr2L 10156327 10156352 chr2L 10163796 10163816 blood 9 7469 4.5 8.5 6.5 1.2 7489 chr2L 10156327 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163816 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-381 267 chr2L 10321367 10321402 chr2L 10321447 10321482 7 76 10.5 9.5 10.0 0.6 115 chr2L 10321367 intron CG5381 - chr2L 10321424 intron CG5381 - chr2L 10321482 intron CG5381 - chr2L_7_10320001 chr2L_10320001 RAL-381 268 chr2L 10483017 10483046 chr2L 10483136 10483165 7 119 6.5 8.5 7.5 0.8 148 chr2L 10483017 intergenic RluA-2 +,Grip75 + chr2L 10483091 intergenic RluA-2 +,Grip75 + chr2L 10483165 intergenic Grip75 +,RluA-2 + chr2L_7_10480001 chr2L_10480001 RAL-381 269 chr2L 10500056 10500077 chr2L 10500142 10500162 4 86 2.5 3.0 2.8 1.1 106 chr2L 10500056 intron Myo31DF - chr2L 10500109 intron Myo31DF - chr2L 10500162 intron Myo31DF - chr2L_4_10500001 chr2L_10500001 RAL-381 270 chr2L 10572699 10572732 chr2L 10572780 10572813 6 81 12.0 10.0 11.0 0.5 114 chr2L 10572699 intron Trim9 + chr2L 10572756 intron Trim9 + chr2L 10572813 intron Trim9 + chr2L_6_10570001 chr2L_10570001 RAL-381 271 chr2L 10580684 10580804 chr2L 10580760 10580885 9 77 10.5 7.0 8.8 0.9 201 chr2L 10580684 intron Trim9 + chr2L 10580784 intron Trim9 + chr2L 10580885 intron Trim9 + chr2L_9_10580001 chr2L_10580001 RAL-381 272 chr2L 10592840 10592871 chr2L 10600502 10600533 opus 5 7662 1.5 1.0 1.2 2.3 7693 chr2L 10592840 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600533 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-381 273 chr2L 10640639 10640671 chr2L 10640728 10640760 13 89 13.5 14.5 14.0 0.9 121 chr2L 10640639 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_13_10640001 chr2L_10640001 RAL-381 274 chr2L 10727290 10727304 chr2L 10727401 10727415 4 111 6.5 6.0 6.2 0.6 125 chr2L 10727290 intron CG6431 + chr2L 10727352 intron CG6431 + chr2L 10727415 intron CG6431 + chr2L_4_10725001 chr2L_10725001 RAL-381 275 chr2L 10862841 10862870 chr2L 10864454 10864483 Rt1c 17 1613 1.5 4.5 3.0 4.2 1642 chr2L 10862841 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864483 3` UTR CR43807 - chr2L_17_10860001 chr2L_10860001 RAL-381 276 chr2L 10914801 10914812 chr2L 10914892 10914894 5 87 16.5 11.5 14.0 0.3 93 chr2L 10914801 intergenic not near genes chr2L 10914848 intergenic not near genes chr2L 10914894 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-381 277 chr2L 10946950 10946973 chr2L 10956165 10956188 roo 11 9214 4.5 10.5 7.5 1.3 9238 chr2L 10946950 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_11_10950001 chr2L_10950001 RAL-381 278 chr2L 11182109 11182131 chr2L 11182232 11182254 4 122 7.5 4.0 5.8 0.6 145 chr2L 11182109 intron Ca-beta - chr2L 11182182 intron Ca-beta - chr2L 11182254 intron Ca-beta - chr2L_4_11180001 chr2L_11180001 RAL-381 279 chr2L 11185683 11185710 chr2L 11185774 11185801 5 91 12.0 12.5 12.2 0.4 118 chr2L 11185683 intron Ca-beta - chr2L 11185742 intron Ca-beta - chr2L 11185801 intron Ca-beta - chr2L_5_11185001 chr2L_11185001 RAL-381 280 chr2L 11253336 11253347 chr2L 11253417 11253428 4 81 4.5 6.0 5.2 0.6 92 chr2L 11253336 intron ab + chr2L 11253382 intron ab + chr2L 11253428 intron ab + chr2L_4_11250001 chr2L_11250001 RAL-381 281 chr2L 11292385 11292399 chr2L 11292467 11292481 5 81 4.0 4.0 4.0 1.0 96 chr2L 11292385 intergenic not near genes chr2L 11292433 intergenic not near genes chr2L 11292481 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-381 282 chr2L 11312342 11312366 chr2L 11312423 11312449 7 82 10.0 12.0 11.0 0.6 107 chr2L 11312342 intergenic not near genes chr2L 11312396 intergenic not near genes chr2L 11312449 intergenic not near genes chr2L_7_11310001 chr2L_11310001 RAL-381 283 chr2L 11418657 11418674 chr2L 11418736 11418753 5 79 9.0 11.0 10.0 0.5 96 chr2L 11418657 intergenic not near genes chr2L 11418705 intergenic not near genes chr2L 11418753 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-381 284 chr2L 11453132 11453150 chr2L 11453243 11453262 7 113 7.5 10.0 8.8 0.7 130 chr2L 11453132 intergenic not near genes chr2L 11453197 intergenic not near genes chr2L 11453262 intergenic not near genes chr2L_7_11450001 chr2L_11450001 RAL-381 285 chr2L 11455172 11455182 chr2L 11455250 11455260 4 78 9.5 13.5 11.5 0.3 88 chr2L 11455172 intergenic not near genes chr2L 11455216 intergenic not near genes chr2L 11455260 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-381 286 chr2L 11491136 11491150 chr2L 11491220 11491231 4 81 1.5 6.0 3.8 0.8 95 chr2L 11491136 intergenic not near genes chr2L 11491184 intergenic not near genes chr2L 11491231 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-381 287 chr2L 11537762 11537780 chr2L 11537878 11537897 9 117 5.0 7.0 6.0 1.3 135 chr2L 11537762 intergenic not near genes chr2L 11537830 intergenic not near genes chr2L 11537897 intergenic not near genes chr2L_9_11535001 chr2L_11535001 RAL-381 288 chr2L 11563635 11563667 chr2L 11568839 11568870 copia 12 5202 3.0 3.0 3.0 3.0 5235 chr2L 11563635 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-381 289 chr2L 11614078 11614086 chr2L 11615552 11615574 hopper2 4 1484 2.5 4.0 3.2 1.0 1496 chr2L 11614078 intron kek2 + chr2L 11614826 intron kek2 + chr2L 11615574 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-381 290 chr2L 11629577 11629601 chr2L 11629673 11629697 4 96 5.0 8.0 6.5 0.5 120 chr2L 11629577 intergenic not near genes chr2L 11629637 intergenic not near genes chr2L 11629697 intergenic not near genes chr2L_4_11625001 chr2L_11625001 RAL-381 291 chr2L 11698573 11698587 chr2L 11698666 11698680 5 93 5.0 6.0 5.5 0.8 107 chr2L 11698573 intergenic not near genes chr2L 11698626 intergenic not near genes chr2L 11698680 intergenic not near genes chr2L_5_11695001 chr2L_11695001 RAL-381 292 chr2L 11710525 11710535 chr2L 11710588 11710615 4 76 8.5 8.5 8.5 0.4 90 chr2L 11710525 intergenic not near genes chr2L 11710570 intergenic not near genes chr2L 11710615 intergenic not near genes chr2L_4_11710001 chr2L_11710001 RAL-381 293 chr2L 11713505 11713540 chr2L 11720973 11721007 blood 13 7467 2.0 3.0 2.5 3.7 7502 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_13_11715001 chr2L_11715001 RAL-381 294 chr2L 11752866 11752889 chr2L 11753156 11753175 6 286 9.0 7.5 8.2 0.7 309 chr2L 11752866 intergenic CG42470 - chr2L 11753020 3` UTR CG42470 - chr2L 11753175 3` UTR CG42470 - chr2L_6_11750001 chr2L_11750001 RAL-381 295 chr2L 11820436 11820462 chr2L 11820517 11820543 6 81 4.5 4.5 4.5 1.1 107 chr2L 11820436 intron Pde1c - chr2L 11820490 intron Pde1c - chr2L 11820543 intron Pde1c - chr2L_6_11820001 chr2L_11820001 RAL-381 296 chr2L 11854707 11854721 chr2L 11854882 11854896 7 175 15.5 12.5 14.0 0.5 189 chr2L 11854707 intron Pde1c - chr2L 11854802 intron Pde1c - chr2L 11854896 intron Pde1c - chr2L_7_11850001 chr2L_11850001 RAL-381 297 chr2L 11870948 11870977 chr2L 11871026 11871055 6 72 1.0 4.5 2.8 1.6 107 chr2L 11870948 intron Pde1c - chr2L 11871002 intron Pde1c - chr2L 11871055 intron Pde1c - chr2L_6_11870001 chr2L_11870001 RAL-381 298 chr2L 12067329 12067357 chr2L 12074381 12074409 297 7 7052 1.5 2.0 1.8 2.5 7080 chr2L 12067329 intergenic not near genes chr2L 12070869 intergenic not near genes chr2L 12074409 intergenic not near genes chr2L_7_12070001 chr2L_12070001 RAL-381 299 chr2L 12131471 12131493 chr2L 12131567 12131588 7 96 7.5 10.5 9.0 0.7 117 chr2L 12131471 intron rho-6 - chr2L 12131530 intron rho-6 - chr2L 12131588 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-381 300 chr2L 12151890 12151925 chr2L 12151985 12152020 6 95 11.5 9.0 10.2 0.5 130 chr2L 12151890 intron CG31760 + chr2L 12151955 intron CG31760 + chr2L 12152020 intron CG31760 + chr2L_6_12150001 chr2L_12150001 RAL-381 301 chr2L 12153933 12153958 chr2L 12154010 12154035 5 77 9.0 6.0 7.5 0.6 102 chr2L 12153933 exon CG31760 + chr2L 12153984 intron CG31760 + chr2L 12154035 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-381 302 chr2L 12157611 12157640 chr2L 12157690 12157719 6 78 16.5 14.5 15.5 0.4 108 chr2L 12157611 intron CG31760 + chr2L 12157665 intron CG31760 + chr2L 12157719 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-381 303 chr2L 12229575 12229606 chr2L 12229652 12229683 5 77 1.0 1.5 1.2 2.3 108 chr2L 12229575 intron aret + chr2L 12229629 intron aret + chr2L 12229683 intron aret + chr2L_5_12225001 chr2L_12225001 RAL-381 304 chr2L 12237011 12237035 chr2L 12237095 12237120 8 79 8.0 6.5 7.2 1.0 109 chr2L 12237011 intron aret + chr2L 12237066 intron aret + chr2L 12237120 intron aret + chr2L_8_12235001 chr2L_12235001 RAL-381 305 chr2L 12266101 12266128 chr2L 12266181 12266204 5 80 5.0 6.5 5.8 0.7 103 chr2L 12266101 intron aret + chr2L 12266152 intron aret + chr2L 12266204 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-381 306 chr2L 12266525 12266557 chr2L 12266608 12266640 7 82 8.0 6.5 7.2 0.9 115 chr2L 12266525 intron aret + chr2L 12266582 intron aret + chr2L 12266640 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-381 307 chr2L 12268108 12268115 chr2L 12268190 12268196 4 82 5.0 2.0 3.5 0.9 88 chr2L 12268108 intron aret + chr2L 12268152 intron aret + chr2L 12268196 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-381 308 chr2L 12347370 12347389 chr2L 12347456 12347459 5 81 12.0 8.5 10.2 0.4 89 chr2L 12347370 intron bru-2 + chr2L 12347414 intron bru-2 + chr2L 12347459 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-381 309 chr2L 12357835 12357868 chr2L 12357942 12357975 6 106 7.5 7.0 7.2 0.7 140 chr2L 12357835 intron,exon bru-2 +,CG17010 + chr2L 12357905 intron,3` UTR bru-2 +,CG17010 + chr2L 12357975 intron bru-2 + chr2L_6_12355001 chr2L_12355001 RAL-381 310 chr2L 12418869 12418888 chr2L 12418964 12418978 4 94 7.0 5.0 6.0 0.6 109 chr2L 12418869 intron vir-1 - chr2L 12418924 intron vir-1 - chr2L 12418978 intron vir-1 - chr2L_4_12415001 chr2L_12415001 RAL-381 311 chr2L 12479535 12479563 chr2L 12479613 12479641 6 78 4.5 5.0 4.8 1.0 106 chr2L 12479535 intron bun - chr2L 12479588 intron bun - chr2L 12479641 intron bun - chr2L_6_12475001 chr2L_12475001 RAL-381 312 chr2L 12558321 12558349 chr2L 12565450 12565478 HMS-Beagle 8 7126 2.5 2.0 2.2 2.5 7157 chr2L 12558321 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565478 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-381 313 chr2L 12601780 12601801 chr2L 12601855 12601885 6 81 5.0 5.0 5.0 1.0 105 chr2L 12601780 intron nub + chr2L 12601832 intron nub + chr2L 12601885 intron nub + chr2L_6_12600001 chr2L_12600001 RAL-381 314 chr2L 12693838 12693864 chr2L 12693915 12693941 7 77 14.5 11.5 13.0 0.5 103 chr2L 12693838 exon CG6153 + chr2L 12693890 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693941 3` UTR CG5780 - chr2L_7_12690001 chr2L_12690001 RAL-381 315 chr2L 12728935 12728944 chr2L 12729177 12729186 pogo 4 242 4.5 6.0 5.2 0.6 251 chr2L 12728935 intron MRP + chr2L 12729060 intron MRP + chr2L 12729186 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-381 316 chr2L 12731063 12731086 chr2L 12735829 12735853 F-element 8 4766 4.5 6.0 5.2 1.3 4790 chr2L 12731063 intron MRP + chr2L 12733458 intron MRP + chr2L 12735853 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-381 317 chr2L 12736669 12736692 chr2L 12736745 12736768 4 76 20.0 16.0 18.0 0.2 99 chr2L 12736669 intron MRP + chr2L 12736718 intron MRP + chr2L 12736768 intron MRP + chr2L_4_12735001 chr2L_12735001 RAL-381 318 chr2L 12739175 12739198 chr2L 12743952 12743979 Doc 11 4779 3.5 6.5 5.0 1.8 4804 chr2L 12739175 exon MRP + chr2L 12741577 intron MRP + chr2L 12743979 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-381 319 chr2L 12781802 12781812 chr2L 12789245 12789251 Quasimodo 6 7441 7.5 4.5 6.0 0.9 7449 chr2L 12781802 intergenic not near genes chr2L 12785526 intergenic not near genes chr2L 12789251 intergenic not near genes chr2L_6_12785001 chr2L_12785001 RAL-381 320 chr2L 12861696 12861719 chr2L 12863163 12863186 hobo 8 1466 3.0 2.5 2.8 2.1 1490 chr2L 12861696 intergenic not near genes chr2L 12862441 intergenic not near genes chr2L 12863186 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-381 321 chr2L 12868255 12868273 chr2L 12868327 12868359 5 83 17.0 13.0 15.0 0.3 104 chr2L 12868255 intergenic not near genes chr2L 12868307 intergenic not near genes chr2L 12868359 intergenic not near genes chr2L_5_12865001 chr2L_12865001 RAL-381 322 chr2L 12894020 12894054 chr2L 12895487 12895516 hobo 6 1466 4.5 9.0 6.8 0.8 1496 chr2L 12894020 intergenic not near genes chr2L 12894768 intergenic not near genes chr2L 12895516 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-381 323 chr2L 12933849 12933873 chr2L 12941316 12941340 blood 18 7467 6.0 5.5 5.8 2.6 7491 chr2L 12933849 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941340 intergenic not near genes chr2L_18_12935001 chr2L_12935001 RAL-381 324 chr2L 13036247 13036265 chr2L 13036489 13036507 X-element 4 242 3.0 0.5 1.8 1.4 260 chr2L 13036247 intron CG9932 - chr2L 13036377 intron CG9932 - chr2L 13036507 intron CG9932 - chr2L_4_13035001 chr2L_13035001 RAL-381 325 chr2L 13073609 13073639 chr2L 13073698 13073727 11 87 10.5 14.0 12.2 0.8 118 chr2L 13073609 intergenic not near genes chr2L 13073668 intergenic not near genes chr2L 13073727 intergenic not near genes chr2L_11_13070001 chr2L_13070001 RAL-381 326 chr2L 13147765 13147957 chr2L 13147823 13148038 7 75 7.5 2.0 4.8 1.2 273 chr2L 13147765 intergenic not near genes chr2L 13147902 intergenic not near genes chr2L 13148038 intergenic not near genes chr2L_7_13145001 chr2L_13145001 RAL-381 327 chr2L 13231886 13231910 chr2L 13231997 13232021 6 111 9.5 10.0 9.8 0.6 135 chr2L 13231886 intergenic Prosalpha6T + chr2L 13231954 intergenic Prosalpha6T + chr2L 13232021 intergenic Prosalpha6T + chr2L_6_13230001 chr2L_13230001 RAL-381 328 chr2L 13248126 13248134 chr2L 13248232 13248241 6 107 15.5 14.5 15.0 0.4 115 chr2L 13248126 intron CG16820 + chr2L 13248184 intron CG16820 + chr2L 13248241 intron CG16820 + chr2L_6_13245001 chr2L_13245001 RAL-381 329 chr2L 13369326 13369336 chr2L 13369400 13369413 7 75 15.5 16.0 15.8 0.4 87 chr2L 13369326 5` UTR CG31855 + chr2L 13369370 5` UTR CG31855 + chr2L 13369413 exon CG31855 + chr2L_7_13365001 chr2L_13365001 RAL-381 330 chr2L 13398722 13398750 chr2L 13398800 13398830 5 80 0.0 1.0 0.5 3.3 108 chr2L 13398722 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398776 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398830 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_5_13395001 chr2L_13395001 RAL-381 331 chr2L 13405646 13405678 chr2L 13410443 13410475 Doc 12 4795 6.5 3.5 5.0 2.0 4829 chr2L 13405646 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410475 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-381 332 chr2L 13421924 13421946 chr2L 13421999 13422024 8 77 7.5 11.0 9.2 0.8 100 chr2L 13421924 intron CG42784 + chr2L 13421974 intron CG42784 + chr2L 13422024 intron CG42784 + chr2L_8_13420001 chr2L_13420001 RAL-381 333 chr2L 13449472 13449489 chr2L 13456908 13456925 Quasimodo 5 7436 1.5 4.0 2.8 1.3 7453 chr2L 13449472 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456925 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-381 334 chr2L 13481459 13481474 chr2L 13482061 13482081 jockey 7 605 7.0 8.5 7.8 0.8 622 chr2L 13481459 intron CG42784 + chr2L 13481770 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-381 335 chr2L 13492435 13492461 chr2L 13492551 13492580 11 115 9.0 9.5 9.2 1.1 145 chr2L 13492435 intron CG42784 + chr2L 13492508 intron CG42784 + chr2L 13492580 intron CG42784 + chr2L_11_13490001 chr2L_13490001 RAL-381 336 chr2L 13600381 13600397 chr2L 13600641 13600657 4 260 4.5 20.0 12.2 0.3 276 chr2L 13600381 intron kuz + chr2L 13600519 intron kuz + chr2L 13600657 intron kuz + chr2L_4_13600001 chr2L_13600001 RAL-381 337 chr2L 13626122 13626128 chr2L 13626198 13626211 4 80 10.0 8.0 9.0 0.4 89 chr2L 13626122 intron kuz + chr2L 13626166 intron kuz + chr2L 13626211 intron kuz + chr2L_4_13625001 chr2L_13625001 RAL-381 338 chr2L 13628827 13628842 chr2L 13628906 13628921 5 79 7.5 8.5 8.0 0.6 94 chr2L 13628827 intron kuz + chr2L 13628874 intron kuz + chr2L 13628921 intron kuz + chr2L_5_13625001 chr2L_13625001 RAL-381 339 chr2L 13673694 13673712 chr2L 13673769 13673793 6 79 5.0 8.0 6.5 0.8 99 chr2L 13673694 intergenic not near genes chr2L 13673744 intergenic not near genes chr2L 13673793 intergenic not near genes chr2L_6_13670001 chr2L_13670001 RAL-381 340 chr2L 13761294 13761310 chr2L 13761375 13761393 5 79 14.0 14.5 14.2 0.3 99 chr2L 13761294 intron TM9SF4 + chr2L 13761344 intron TM9SF4 + chr2L 13761393 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-381 341 chr2L 13761819 13761831 chr2L 13762911 13762942 Doc 6 1108 5.5 3.5 4.5 1.1 1123 chr2L 13761819 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762942 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-381 342 chr2L 13853096 13853116 chr2L 13862246 13862266 roo 8 9150 7.0 2.5 4.8 1.4 9170 chr2L 13853096 intron CenG1A + chr2L 13857681 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_8_13855001 chr2L_13855001 RAL-381 343 chr2L 13918812 13918844 chr2L 13918899 13918931 8 84 9.5 7.5 8.5 0.8 119 chr2L 13918812 intron Ance-3 + chr2L 13918872 intron Ance-3 + chr2L 13918931 intron Ance-3 + chr2L_8_13915001 chr2L_13915001 RAL-381 344 chr2L 13988285 13988304 chr2L 13988372 13988391 5 87 1.5 1.0 1.2 2.3 106 chr2L 13988285 intron rk - chr2L 13988338 intron rk - chr2L 13988391 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-381 345 chr2L 14135235 14135265 chr2L 14135316 14135346 6 81 10.5 6.5 8.5 0.6 111 chr2L 14135235 intron CG17341 + chr2L 14135290 intron CG17341 + chr2L 14135346 intron CG17341 + chr2L_6_14135001 chr2L_14135001 RAL-381 346 chr2L 14180064 14180089 chr2L 14180140 14180165 6 76 11.0 9.5 10.2 0.5 101 chr2L 14180064 intron CG43333 - chr2L 14180114 intron CG43333 - chr2L 14180165 intron CG43333 - chr2L_6_14180001 chr2L_14180001 RAL-381 347 chr2L 14549159 14549178 chr2L 14549235 14549254 4 76 3.0 2.5 2.8 1.1 95 chr2L 14549159 intergenic CG4218 - chr2L 14549206 intergenic CG4218 - chr2L 14549254 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-381 348 chr2L 14549761 14549794 chr2L 14550003 14550036 15 242 10.0 10.5 10.2 1.3 275 chr2L 14549761 intergenic not near genes chr2L 14549898 intergenic CR44853 - chr2L 14550036 intergenic CR44853 - chr2L_15_14545001 chr2L_14545001 RAL-381 349 chr2L 14565871 14565899 chr2L 14565952 14565974 6 80 13.0 8.0 10.5 0.5 103 chr2L 14565871 intergenic not near genes chr2L 14565922 intergenic not near genes chr2L 14565974 intergenic not near genes chr2L_6_14565001 chr2L_14565001 RAL-381 350 chr2L 14588398 14588419 chr2L 14588552 14588573 6 151 2.5 1.5 2.0 2.0 175 chr2L 14588398 intergenic CG42680 - chr2L 14588486 intergenic CG42680 - chr2L 14588573 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-381 351 chr2L 14601977 14602003 chr2L 14602061 14602087 8 84 5.5 5.5 5.5 1.2 110 chr2L 14601977 exon osp - chr2L 14602032 intron osp - chr2L 14602087 intron osp - chr2L_8_14600001 chr2L_14600001 RAL-381 352 chr2L 14707179 14707228 chr2L 14707265 14707345 8 101 1.0 2.5 1.8 2.9 166 chr2L 14707179 intergenic not near genes chr2L 14707262 intergenic not near genes chr2L 14707345 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-381 353 chr2L 14716605 14716623 chr2L 14716682 14716701 4 78 8.5 9.5 9.0 0.4 96 chr2L 14716605 intergenic not near genes chr2L 14716653 intergenic not near genes chr2L 14716701 intergenic not near genes chr2L_4_14715001 chr2L_14715001 RAL-381 354 chr2L 14758810 14758835 chr2L 14758888 14758915 5 80 17.0 16.0 16.5 0.3 105 chr2L 14758810 intergenic not near genes chr2L 14758862 intergenic not near genes chr2L 14758915 intergenic not near genes chr2L_5_14755001 chr2L_14755001 RAL-381 355 chr2L 14778805 14778834 chr2L 14779093 14779121 5 288 5.0 12.5 8.8 0.5 316 chr2L 14778805 intergenic not near genes chr2L 14778963 intergenic not near genes chr2L 14779121 intergenic not near genes chr2L_5_14775001 chr2L_14775001 RAL-381 356 chr2L 14798752 14798766 chr2L 19176772 19176774 4 4378015 8.5 4.5 6.5 0.5 4378022 chr2L 14798752 intergenic not near genes chr2L 16987763 intron beat-IIIb + chr2L 19176774 intron brat + chr2L_4_16985001 chr2L_16985001 RAL-381 357 chr2L 14803879 14803913 chr2L 14809082 14809116 copia 15 5202 3.5 4.5 4.0 3.0 5237 chr2L 14803879 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_15_14805001 chr2L_14805001 RAL-381 358 chr2L 14889952 14889987 chr2L 14890376 14890412 jockey 14 424 5.0 4.5 4.8 2.4 460 chr2L 14889952 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_14_14890001 chr2L_14890001 RAL-381 359 chr2L 14943103 14943122 chr2L 14943338 14943355 4 234 6.5 5.0 5.8 0.6 252 chr2L 14943103 intron CG42313 - chr2L 14943229 intron CG42313 - chr2L 14943355 intron CG42313 - chr2L_4_14940001 chr2L_14940001 RAL-381 360 chr2L 15000862 15000889 chr2L 15000997 15001015 5 134 26.0 15.0 20.5 0.2 153 chr2L 15000862 intergenic not near genes chr2L 15000938 intergenic not near genes chr2L 15001015 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-381 361 chr2L 15003550 15003572 chr2L 15003634 15003656 7 84 5.5 5.5 5.5 1.1 106 chr2L 15003550 intergenic not near genes chr2L 15003603 intergenic not near genes chr2L 15003656 intergenic not near genes chr2L_7_15000001 chr2L_15000001 RAL-381 362 chr2L 15044712 15044737 chr2L 15044783 15044812 7 75 1.5 0.0 0.8 3.9 100 chr2L 15044712 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044812 intergenic ck - chr2L_7_15040001 chr2L_15040001 RAL-381 363 chr2L 15077907 15078088 chr2L 15077995 15078176 4 88 2.5 7.5 5.0 0.7 269 chr2L 15077907 intron CG15270 + chr2L 15078042 intron CG15270 + chr2L 15078176 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-381 364 chr2L 15079090 15079113 chr2L 15079186 15079210 8 100 13.5 17.5 15.5 0.5 120 chr2L 15079090 intron CG15270 + chr2L 15079150 intron CG15270 + chr2L 15079210 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-381 365 chr2L 15185965 15185977 chr2L 15186226 15186238 6 261 3.5 2.0 2.8 1.6 273 chr2L 15185965 intron CG4168 - chr2L 15186102 intron CG4168 - chr2L 15186238 intron CG4168 - chr2L_6_15185001 chr2L_15185001 RAL-381 366 chr2L 15226376 15226394 chr2L 15226452 15226470 5 75 2.5 4.5 3.5 1.1 94 chr2L 15226376 intergenic not near genes chr2L 15226423 intergenic not near genes chr2L 15226470 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-381 367 chr2L 15309355 15309370 chr2L 15309458 15309473 4 103 7.0 7.5 7.2 0.5 118 chr2L 15309355 intergenic not near genes chr2L 15309414 intergenic not near genes chr2L 15309473 intergenic not near genes chr2L_4_15305001 chr2L_15305001 RAL-381 368 chr2L 15446066 15446084 chr2L 15453521 15453553 blood 5 7464 3.0 2.0 2.5 1.4 7487 chr2L 15446066 intergenic not near genes chr2L 15449810 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-381 369 chr2L 15508841 15508862 chr2L 15508918 15508939 5 77 11.5 15.5 13.5 0.3 98 chr2L 15508841 intergenic not near genes chr2L 15508890 intergenic not near genes chr2L 15508939 intergenic not near genes chr2L_5_15505001 chr2L_15505001 RAL-381 370 chr2L 15544382 15544405 chr2L 15544458 15544481 6 74 13.0 13.5 13.2 0.4 99 chr2L 15544382 intergenic not near genes chr2L 15544432 intergenic not near genes chr2L 15544481 intergenic not near genes chr2L_6_15540001 chr2L_15540001 RAL-381 371 chr2L 15586408 15586433 chr2L 15593460 15593476 297 7 7051 4.5 2.5 3.5 1.6 7068 chr2L 15586408 intergenic not near genes chr2L 15589942 intergenic not near genes chr2L 15593476 intergenic not near genes chr2L_7_15585001 chr2L_15585001 RAL-381 372 chr2L 15783440 15783459 chr2L 15783510 15783523 6 73 6.5 5.5 6.0 0.9 83 chr2L 15783440 intergenic not near genes chr2L 15783482 intergenic not near genes chr2L 15783523 intergenic not near genes chr2L_6_15780001 chr2L_15780001 RAL-381 373 chr2L 15906180 15906208 chr2L 15906269 15906297 4 89 3.5 5.0 4.2 0.8 117 chr2L 15906180 intron beat-Ib - chr2L 15906238 intron beat-Ib - chr2L 15906297 intron beat-Ib - chr2L_4_15905001 chr2L_15905001 RAL-381 374 chr2L 15956025 15956056 chr2L 15957492 15957523 hobo 8 1466 3.5 2.0 2.8 2.1 1498 chr2L 15956025 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957523 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-381 375 chr2L 15988038 15988065 chr2L 15988126 15988153 4 88 8.0 10.0 9.0 0.4 115 chr2L 15988038 intergenic not near genes chr2L 15988096 intergenic not near genes chr2L 15988153 intergenic not near genes chr2L_4_15985001 chr2L_15985001 RAL-381 376 chr2L 16051609 16051628 chr2L 16051688 16051707 6 79 14.0 9.0 11.5 0.5 98 chr2L 16051609 intron beat-Ia + chr2L 16051658 intron beat-Ia + chr2L 16051707 intron beat-Ia + chr2L_6_16050001 chr2L_16050001 RAL-381 377 chr2L 16069265 16069297 chr2L 16069347 16069374 7 81 17.0 17.0 17.0 0.4 109 chr2L 16069265 intron beat-Ia + chr2L 16069320 intron beat-Ia + chr2L 16069374 intron beat-Ia + chr2L_7_16065001 chr2L_16065001 RAL-381 378 chr2L 10522357 10522357 chr2L 16071771 16071771 4 5549414 14.0 25.0 19.5 0.2 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_4_13295001 chr2L_13295001 RAL-381 379 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 20 145889 25.0 32.0 28.5 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_20_16140001 chr2L_16140001 RAL-381 380 chr2L 16098920 16098954 chr2L 16099008 16099042 7 88 4.5 6.5 5.5 1.1 122 chr2L 16098920 intergenic not near genes chr2L 16098981 intergenic not near genes chr2L 16099042 intergenic not near genes chr2L_7_16095001 chr2L_16095001 RAL-381 381 chr2L 16141166 16141196 chr2L 16146373 16146403 copia 7 5206 3.0 2.0 2.5 2.0 5237 chr2L 16141166 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146403 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-381 382 chr2L 16210496 16210519 chr2L 16210575 16210598 6 79 7.5 9.0 8.2 0.7 102 chr2L 16210496 intergenic not near genes chr2L 16210547 intergenic not near genes chr2L 16210598 intergenic not near genes chr2L_6_16210001 chr2L_16210001 RAL-381 383 chr2L 9084339 9084340 chr2L 16217660 16217660 14 7133320 22.0 32.0 27.0 0.5 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-381 384 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 17 145889 25.0 32.0 28.5 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_16140001 chr2L_16140001 RAL-381 385 chr2L 16217660 16217660 chr2L 18622718 18622719 9 2405058 28.5 20.0 24.2 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-381 386 chr2L 16243828 16243844 chr2L 16243923 16243939 5 93 3.5 0.5 2.0 1.7 111 chr2L 16243828 exon CG42818 + chr2L 16243884 exon CG42818 + chr2L 16243939 exon CG42818 + chr2L_5_16240001 chr2L_16240001 RAL-381 387 chr2L 16254895 16254918 chr2L 16255154 16255175 11 258 2.5 1.0 1.8 3.9 280 chr2L 16254895 intron PRL-1 - chr2L 16255035 intron PRL-1 - chr2L 16255175 intron PRL-1 - chr2L_11_16255001 chr2L_16255001 RAL-381 388 chr2L 16274467 16274488 chr2L 16274567 16274582 6 99 15.5 12.0 13.8 0.4 115 chr2L 16274467 intron crp - chr2L 16274524 intron crp - chr2L 16274582 intron crp - chr2L_6_16270001 chr2L_16270001 RAL-381 389 chr2L 16280256 16280287 chr2L 16281424 16281452 1360 6 1165 4.0 2.5 3.2 1.4 1196 chr2L 16280256 intron crp - chr2L 16280854 intron crp - chr2L 16281452 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-381 390 chr2L 16337862 16337875 chr2L 16337941 16337942 4 76 12.5 11.0 11.8 0.3 80 chr2L 16337862 5` UTR CG31817 - chr2L 16337902 intergenic CG31817 -,CG42266 - chr2L 16337942 intergenic CG42266 -,CG31817 - chr2L_4_16335001 chr2L_16335001 RAL-381 391 chr2L 16435953 16435985 chr2L 16436035 16436049 14 80 5.5 3.5 4.5 2.5 96 chr2L 16435953 intron CG5888 - chr2L 16436001 intron CG5888 - chr2L 16436049 intron CG5888 - chr2L_14_16435001 chr2L_16435001 RAL-381 392 chr2L 16488122 16488151 chr2L 16488254 16488283 6 132 13.5 10.0 11.8 0.5 161 chr2L 16488122 intergenic CG4580 + chr2L 16488202 5` UTR CG4580 + chr2L 16488283 exon CG4580 + chr2L_6_16485001 chr2L_16485001 RAL-381 393 chr2L 16492735 16492758 chr2L 16492828 16492851 10 93 7.0 8.5 7.8 1.1 116 chr2L 16492735 intron Tpr2 + chr2L 16492793 intron Tpr2 + chr2L 16492851 intron Tpr2 + chr2L_10_16490001 chr2L_16490001 RAL-381 394 chr2L 16504100 16504130 chr2L 16504333 16504357 5 231 5.0 4.0 4.5 0.9 257 chr2L 16504100 intron Tpr2 + chr2L 16504228 intron Tpr2 + chr2L 16504357 intron Tpr2 + chr2L_5_16500001 chr2L_16500001 RAL-381 395 chr2L 16511963 16511992 chr2L 16519076 16519106 HMS-Beagle 6 7114 0.5 2.0 1.2 2.7 7143 chr2L 16511963 intron CG5953 - chr2L 16515534 intron CG5953 - chr2L 16519106 intron CG5953 - chr2L_6_16515001 chr2L_16515001 RAL-381 396 chr2L 16544128 16544145 chr2L 16544201 16544221 4 77 2.0 4.5 3.2 1.0 93 chr2L 16544128 intergenic not near genes chr2L 16544174 intergenic not near genes chr2L 16544221 intergenic not near genes chr2L_4_16540001 chr2L_16540001 RAL-381 397 chr2L 16564566 16564577 chr2L 16564662 16564675 4 96 2.5 10.5 6.5 0.5 109 chr2L 16564566 intron CG42389 + chr2L 16564620 intron CG42389 + chr2L 16564675 intron CG42389 + chr2L_4_16560001 chr2L_16560001 RAL-381 398 chr2L 16572205 16572240 chr2L 16572298 16572333 7 93 9.0 5.5 7.2 0.9 128 chr2L 16572205 intron CG42389 + chr2L 16572269 intron CG42389 + chr2L 16572333 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-381 399 chr2L 16573628 16573659 chr2L 16573717 16573748 6 89 12.0 12.5 12.2 0.5 120 chr2L 16573628 intron CG42389 + chr2L 16573688 intron CG42389 + chr2L 16573748 intron CG42389 + chr2L_6_16570001 chr2L_16570001 RAL-381 400 chr2L 16672381 16672416 chr2L 16672468 16672505 6 88 1.0 0.0 0.5 4.0 124 chr2L 16672381 intron Trpgamma - chr2L 16672443 intron Trpgamma - chr2L 16672505 intron Trpgamma - chr2L_6_16670001 chr2L_16670001 RAL-381 401 chr2L 16694133 16694164 chr2L 16694219 16694227 8 83 4.5 6.0 5.2 1.3 94 chr2L 16694133 intron grp + chr2L 16694180 intron grp + chr2L 16694227 intron grp + chr2L_8_16690001 chr2L_16690001 RAL-381 402 chr2L 16716949 16716977 chr2L 16717066 16717094 6 117 6.5 10.0 8.2 0.7 145 chr2L 16716949 intron Cyt-c-d + chr2L 16717022 intron Cyt-c-d + chr2L 16717094 intron Cyt-c-d + chr2L_6_16715001 chr2L_16715001 RAL-381 403 chr2L 16946479 16946498 chr2L 16946564 16946578 4 83 7.0 3.0 5.0 0.7 99 chr2L 16946479 intergenic not near genes chr2L 16946528 intergenic not near genes chr2L 16946578 intergenic not near genes chr2L_4_16945001 chr2L_16945001 RAL-381 404 chr2L 16952131 16952152 chr2L 16952217 16952238 7 86 6.5 9.5 8.0 0.8 107 chr2L 16952131 intergenic not near genes chr2L 16952184 intergenic not near genes chr2L 16952238 intergenic not near genes chr2L_7_16950001 chr2L_16950001 RAL-381 405 chr2L 16958109 16958136 chr2L 16962897 16962924 Doc 7 4788 2.0 4.0 3.0 1.8 4815 chr2L 16958109 intergenic not near genes chr2L 16960516 intergenic not near genes chr2L 16962924 intergenic not near genes chr2L_7_16960001 chr2L_16960001 RAL-381 406 chr2L 17005413 17005436 chr2L 17005510 17005528 14 96 5.5 7.0 6.2 1.9 115 chr2L 17005413 intergenic not near genes chr2L 17005470 intergenic not near genes chr2L 17005528 intergenic not near genes chr2L_14_17005001 chr2L_17005001 RAL-381 407 chr2L 17033915 17033948 chr2L 17034000 17034033 5 85 3.5 2.0 2.8 1.3 118 chr2L 17033915 intergenic not near genes chr2L 17033974 intergenic not near genes chr2L 17034033 intergenic not near genes chr2L_5_17030001 chr2L_17030001 RAL-381 408 chr2L 17053293 17053308 chr2L 17053694 17053718 6 408 6.0 15.0 10.5 0.5 425 chr2L 17053293 intergenic not near genes chr2L 17053506 intergenic not near genes chr2L 17053718 intergenic not near genes chr2L_6_17050001 chr2L_17050001 RAL-381 409 chr2L 17062759 17062789 chr2L 17062841 17062871 4 82 6.5 9.0 7.8 0.5 112 chr2L 17062759 intergenic not near genes chr2L 17062815 intergenic not near genes chr2L 17062871 intergenic not near genes chr2L_4_17060001 chr2L_17060001 RAL-381 410 chr2L 17089949 17089974 chr2L 17090039 17090064 5 89 12.5 13.0 12.8 0.4 115 chr2L 17089949 intergenic not near genes chr2L 17090006 intergenic not near genes chr2L 17090064 intergenic not near genes chr2L_5_17090001 chr2L_17090001 RAL-381 411 chr2L 17156690 17156707 chr2L 17156777 17156795 10 87 6.5 10.5 8.5 1.1 105 chr2L 17156690 intron,intron CG34106 +,beat-IIIa + chr2L 17156742 intron,intron CG34106 +,beat-IIIa + chr2L 17156795 intron,intron CG34106 +,beat-IIIa + chr2L_10_17155001 chr2L_17155001 RAL-381 412 chr2L 17192161 17192167 chr2L 17192249 17192254 4 94 9.5 4.5 7.0 0.5 93 chr2L 17192161 intron beat-IIIc - chr2L 17192208 intron beat-IIIc - chr2L 17192254 intron beat-IIIc - chr2L_4_17190001 chr2L_17190001 RAL-381 413 chr2L 17220823 17220841 chr2L 17220912 17220926 4 88 7.5 2.5 5.0 0.7 103 chr2L 17220823 intron beat-IIIc - chr2L 17220874 intron beat-IIIc - chr2L 17220926 intron beat-IIIc - chr2L_4_17220001 chr2L_17220001 RAL-381 414 chr2L 17238085 17238112 chr2L 17238647 17238672 6 561 2.5 13.5 8.0 0.7 587 chr2L 17238085 intron beat-IIIc - chr2L 17238378 intron beat-IIIc - chr2L 17238672 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-381 415 chr2L 17273189 17273229 chr2L 17277972 17278009 F-element 17 4779 5.0 4.0 4.5 3.1 4820 chr2L 17273189 intergenic not near genes chr2L 17275599 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_17_17275001 chr2L_17275001 RAL-381 416 chr2L 17303438 17303468 chr2L 17303616 17303640 5 176 9.0 11.5 10.2 0.4 202 chr2L 17303438 intergenic not near genes chr2L 17303539 intergenic not near genes chr2L 17303640 intergenic not near genes chr2L_5_17300001 chr2L_17300001 RAL-381 417 chr2L 17335549 17335578 chr2L 17336715 17336743 1360 6 1166 7.5 14.0 10.8 0.5 1194 chr2L 17335549 intergenic not near genes chr2L 17336146 intergenic not near genes chr2L 17336743 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-381 418 chr2L 17386008 17386040 chr2L 17386089 17386118 5 80 8.0 9.0 8.5 0.5 110 chr2L 17386008 intron CLIP-190 + chr2L 17386063 intron CLIP-190 + chr2L 17386118 intron CLIP-190 + chr2L_5_17385001 chr2L_17385001 RAL-381 419 chr2L 17425174 17425206 chr2L 17425520 17425542 10 343 12.0 1.5 6.8 1.3 368 chr2L 17425174 intron Dif - chr2L 17425358 intron Dif - chr2L 17425542 intron Dif - chr2L_10_17425001 chr2L_17425001 RAL-381 420 chr2L 17517855 17517869 chr2L 17517938 17517951 4 82 5.5 2.5 4.0 0.8 96 chr2L 17517855 intron Dhc36C + chr2L 17517903 intron Dhc36C + chr2L 17517951 intron Dhc36C + chr2L_4_17515001 chr2L_17515001 RAL-381 421 chr2L 17581859 17581873 chr2L 17582120 17582134 4 261 5.5 5.0 5.2 0.6 275 chr2L 17581859 intergenic not near genes chr2L 17581996 intergenic not near genes chr2L 17582134 intergenic not near genes chr2L_4_17580001 chr2L_17580001 RAL-381 422 chr2L 17587568 17587588 chr2L 17587655 17587670 5 86 14.5 12.5 13.5 0.3 102 chr2L 17587568 intergenic not near genes chr2L 17587619 intergenic not near genes chr2L 17587670 intergenic not near genes chr2L_5_17585001 chr2L_17585001 RAL-381 423 chr2L 17592801 17592826 chr2L 17592893 17592918 5 91 6.0 7.0 6.5 0.7 117 chr2L 17592801 intron Sytalpha + chr2L 17592860 intron Sytalpha + chr2L 17592918 intron Sytalpha + chr2L_5_17590001 chr2L_17590001 RAL-381 424 chr2L 17727875 17727881 chr2L 17729343 17729347 hobo 5 1467 3.0 5.0 4.0 1.0 1472 chr2L 17727875 intron CadN - chr2L 17728611 intron CadN - chr2L 17729347 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-381 425 chr2L 17731254 17731273 chr2L 17731342 17731361 6 88 13.0 14.5 13.8 0.4 107 chr2L 17731254 intron CadN - chr2L 17731308 intron CadN - chr2L 17731361 intron CadN - chr2L_6_17730001 chr2L_17730001 RAL-381 426 chr2L 17817008 17817032 chr2L 17817085 17817109 7 75 11.0 10.0 10.5 0.6 101 chr2L 17817008 intron CadN2 - chr2L 17817058 intron CadN2 - chr2L 17817109 intron CadN2 - chr2L_7_17815001 chr2L_17815001 RAL-381 427 chr2L 17819928 17819955 chr2L 17825124 17825158 copia 6 5202 1.0 6.0 3.5 1.3 5230 chr2L 17819928 intron CadN2 - chr2L 17822543 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-381 428 chr2L 17859342 17859357 chr2L 17859723 17859753 4 392 7.5 6.0 6.8 0.5 411 chr2L 17859342 intron CadN2 - chr2L 17859548 intron CadN2 - chr2L 17859753 intron CadN2 - chr2L_4_17855001 chr2L_17855001 RAL-381 429 chr2L 17866244 17866261 chr2L 17866328 17866345 5 84 12.0 17.5 14.8 0.3 101 chr2L 17866244 intron CadN2 - chr2L 17866294 intron CadN2 - chr2L 17866345 intron CadN2 - chr2L_5_17865001 chr2L_17865001 RAL-381 430 chr2L 17872324 17872351 chr2L 17872538 17872565 5 214 15.0 14.5 14.8 0.3 241 chr2L 17872324 intron CadN2 - chr2L 17872444 intron CadN2 - chr2L 17872565 intron CadN2 - chr2L_5_17870001 chr2L_17870001 RAL-381 431 chr2L 17911959 17911983 chr2L 17914137 17914161 pogo 5 2177 6.5 4.5 5.5 0.8 2202 chr2L 17911959 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914161 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-381 432 chr2L 17951944 17951972 chr2L 17953411 17953439 hobo 7 1466 6.0 4.5 5.2 1.1 1495 chr2L 17951944 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953439 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-381 433 chr2L 18020739 18020772 chr2L 18020826 18020859 7 87 11.5 10.0 10.8 0.6 120 chr2L 18020739 intron rdo + chr2L 18020799 intron rdo + chr2L 18020859 intron rdo + chr2L_7_18020001 chr2L_18020001 RAL-381 434 chr2L 18026983 18027001 chr2L 18027323 18027341 4 340 10.0 15.0 12.5 0.3 358 chr2L 18026983 5` UTR rdo + chr2L 18027162 intron rdo + chr2L 18027341 intron rdo + chr2L_4_18025001 chr2L_18025001 RAL-381 435 chr2L 18051879 18051888 chr2L 18061026 18061035 roo 4 9147 7.5 2.5 5.0 0.7 9156 chr2L 18051879 intron rdo + chr2L 18056457 intron rdo + chr2L 18061035 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-381 436 chr2L 18051897 18051909 chr2L 18061020 18061048 roo 4 9139 3.0 2.0 2.5 1.1 9151 chr2L 18051897 intron rdo + chr2L 18056472 intron rdo + chr2L 18061048 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-381 437 chr2L 18111241 18111262 chr2L 18111332 18111353 5 90 5.5 3.5 4.5 0.9 112 chr2L 18111241 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-381 438 chr2L 18197480 18197504 chr2L 18197559 18197573 6 77 13.0 16.0 14.5 0.4 93 chr2L 18197480 intron CG42750 - chr2L 18197526 intron CG42750 - chr2L 18197573 intron CG42750 - chr2L_6_18195001 chr2L_18195001 RAL-381 439 chr2L 18232038 18232063 chr2L 18232126 18232151 8 88 12.0 11.5 11.8 0.6 113 chr2L 18232038 intron CG42750 - chr2L 18232094 intron CG42750 - chr2L 18232151 intron CG42750 - chr2L_8_18230001 chr2L_18230001 RAL-381 440 chr2L 18235080 18235094 chr2L 18235190 18235208 6 123 17.5 16.5 17.0 0.3 128 chr2L 18235080 intron CG42750 - chr2L 18235144 intron CG42750 - chr2L 18235208 intron CG42750 - chr2L_6_18235001 chr2L_18235001 RAL-381 441 chr2L 18246469 18246480 chr2L 18246571 18246582 4 102 4.0 2.0 3.0 1.0 113 chr2L 18246469 intron CG42750 - chr2L 18246526 intron CG42750 - chr2L 18246582 intron CG42750 - chr2L_4_18245001 chr2L_18245001 RAL-381 442 chr2L 18254811 18254840 chr2L 18254911 18254940 5 100 8.0 6.5 7.2 0.6 129 chr2L 18254811 intron CG42750 - chr2L 18254876 intron CG42750 - chr2L 18254940 intron CG42750 - chr2L_5_18250001 chr2L_18250001 RAL-381 443 chr2L 18264063 18264176 chr2L 18264140 18264264 11 86 7.0 7.5 7.2 1.3 201 chr2L 18264063 intron CG42750 - chr2L 18264164 intron CG42750 - chr2L 18264264 intron CG42750 - chr2L_11_18260001 chr2L_18260001 RAL-381 444 chr2L 18303976 18304007 chr2L 18304067 18304098 6 89 7.5 6.5 7.0 0.8 122 chr2L 18303976 intergenic not near genes chr2L 18304037 intergenic not near genes chr2L 18304098 intergenic not near genes chr2L_6_18300001 chr2L_18300001 RAL-381 445 chr2L 18408031 18408056 chr2L 18412810 18412840 Doc 10 4783 4.5 3.0 3.8 2.1 4809 chr2L 18408031 intergenic not near genes chr2L 18410436 intergenic not near genes chr2L 18412840 intergenic not near genes chr2L_10_18410001 chr2L_18410001 RAL-381 446 chr2L 16217660 16217660 chr2L 18622718 18622719 7 2405058 28.5 20.0 24.2 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_7_17420001 chr2L_17420001 RAL-381 447 chr2L 18811408 18811437 chr2L 18811490 18811519 6 88 2.0 0.0 1.0 3.0 111 chr2L 18811408 intergenic CG10570 -,CG42502 - chr2L 18811464 intergenic CG10570 -,CG42502 - chr2L 18811519 intergenic not near genes chr2L_6_18810001 chr2L_18810001 RAL-381 448 chr2L 18849973 18850009 chr2L 18850050 18850076 5 74 9.0 7.5 8.2 0.5 103 chr2L 18849973 intron CG17321 + chr2L 18850024 intron CG17321 + chr2L 18850076 intron CG17321 + chr2L_5_18850001 chr2L_18850001 RAL-381 449 chr2L 18883852 18883881 chr2L 18883934 18883963 5 82 10.5 7.5 9.0 0.5 111 chr2L 18883852 intergenic not near genes chr2L 18883908 intergenic not near genes chr2L 18883963 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-381 450 chr2L 18889951 18889973 chr2L 18890028 18890050 6 77 5.5 11.5 8.5 0.6 99 chr2L 18889951 intergenic not near genes chr2L 18890000 intergenic not near genes chr2L 18890050 intergenic not near genes chr2L_6_18890001 chr2L_18890001 RAL-381 451 chr2L 18898420 18898426 chr2L 18898479 18898508 4 70 6.5 6.5 6.5 0.5 88 chr2L 18898420 intergenic not near genes chr2L 18898464 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-381 452 chr2L 18921440 18921466 chr2L 18921521 18921547 7 81 9.0 10.5 9.8 0.6 107 chr2L 18921440 intron ssp3 - chr2L 18921494 intron ssp3 - chr2L 18921547 intron ssp3 - chr2L_7_18920001 chr2L_18920001 RAL-381 453 chr2L 18981393 18981419 chr2L 18981476 18981499 9 82 13.5 15.0 14.2 0.6 106 chr2L 18981393 intron Swip-1 - chr2L 18981446 intron Swip-1 - chr2L 18981499 intron Swip-1 - chr2L_9_18980001 chr2L_18980001 RAL-381 454 chr2L 19024096 19024097 chr2L 21768291 21768291 10 2744194 17.5 22.0 19.8 0.5 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_10_20395001 chr2L_20395001 RAL-381 455 chr2L 19070277 19070299 chr2L 19070370 19070391 8 91 14.0 12.5 13.2 0.6 114 chr2L 19070277 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070391 intergenic not near genes chr2L_8_19070001 chr2L_19070001 RAL-381 456 chr2L 19147368 19147403 chr2L 19154403 19154437 297 12 7034 5.0 3.5 4.2 2.3 7069 chr2L 19147368 intron brat + chr2L 19150902 intron brat + chr2L 19154437 intron brat + chr2L_12_19150001 chr2L_19150001 RAL-381 457 chr2L 19237319 19237338 chr2L 19237419 19237433 9 98 3.5 14.5 9.0 0.9 114 chr2L 19237319 intergenic not near genes chr2L 19237376 intergenic not near genes chr2L 19237433 intergenic not near genes chr2L_9_19235001 chr2L_19235001 RAL-381 458 chr2L 19309626 19309652 chr2L 19309700 19309730 11 78 14.5 12.5 13.5 0.8 104 chr2L 19309626 intergenic not near genes chr2L 19309678 intergenic not near genes chr2L 19309730 intergenic not near genes chr2L_11_19305001 chr2L_19305001 RAL-381 459 chr2L 19331669 19331695 chr2L 19331746 19331747 6 72 4.0 3.0 3.5 1.3 78 chr2L 19331669 intergenic not near genes chr2L 19331708 intergenic not near genes chr2L 19331747 intergenic not near genes chr2L_6_19330001 chr2L_19330001 RAL-381 460 chr2L 19345019 19345047 chr2L 19357228 19357256 blood 18 12209 4.0 4.0 4.0 3.6 12237 chr2L 19345019 intron dnt - chr2L 19351138 intron dnt - chr2L 19357256 intron dnt - chr2L_18_19350001 chr2L_19350001 RAL-381 461 chr2L 19357547 19357566 chr2L 19357637 19357656 10 89 6.5 4.5 5.5 1.5 109 chr2L 19357547 intron dnt - chr2L 19357602 intron dnt - chr2L 19357656 intron dnt - chr2L_10_19355001 chr2L_19355001 RAL-381 462 chr2L 19359189 19359207 chr2L 19359269 19359283 7 89 16.0 16.5 16.2 0.4 94 chr2L 19359189 intron dnt - chr2L 19359236 intron dnt - chr2L 19359283 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-381 463 chr2L 19378351 19378374 chr2L 19378419 19378457 8 78 5.0 2.0 3.5 1.8 106 chr2L 19378351 intergenic not near genes chr2L 19378404 intergenic not near genes chr2L 19378457 intergenic not near genes chr2L_8_19375001 chr2L_19375001 RAL-381 464 chr2L 19380506 19380527 chr2L 19380586 19380607 6 80 12.0 12.0 12.0 0.5 101 chr2L 19380506 intergenic CG17350 + chr2L 19380556 intergenic CG17350 + chr2L 19380607 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-381 465 chr2L 19384006 19384014 chr2L 19384091 19384115 4 97 12.5 12.5 12.5 0.3 109 chr2L 19384006 exon fon - chr2L 19384060 exon fon - chr2L 19384115 exon fon - chr2L_4_19380001 chr2L_19380001 RAL-381 466 chr2L 19441066 19441088 chr2L 19441143 19441165 7 77 4.5 5.5 5.0 1.2 99 chr2L 19441066 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441165 5` UTR CG10237 - chr2L_7_19440001 chr2L_19440001 RAL-381 467 chr2L 19458384 19458417 chr2L 19458487 19458501 8 100 7.5 10.5 9.0 0.8 117 chr2L 19458384 intergenic not near genes chr2L 19458442 intergenic not near genes chr2L 19458501 intergenic not near genes chr2L_8_19455001 chr2L_19455001 RAL-381 468 chr2L 19558522 19558550 chr2L 19558626 19558654 9 104 9.0 8.0 8.5 0.9 132 chr2L 19558522 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558654 intron Tep5 + chr2L_9_19555001 chr2L_19555001 RAL-381 469 chr2L 19559185 19559413 chr2L 19559273 19559488 14 83 12.5 19.0 15.8 0.8 303 chr2L 19559185 exon Tep5 + chr2L 19559336 exon Tep5 + chr2L 19559488 exon Tep5 + chr2L_14_19555001 chr2L_19555001 RAL-381 470 chr2L 19560005 19560037 chr2L 19560258 19560289 10 252 3.0 4.0 3.5 2.2 284 chr2L 19560005 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-381 471 chr2L 19561346 19561367 chr2L 19561487 19561508 5 139 9.0 10.5 9.8 0.5 162 chr2L 19561346 exon Tep5 + chr2L 19561427 exon Tep5 + chr2L 19561508 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-381 472 chr2L 19562530 19562562 chr2L 19562610 19562642 12 78 22.0 17.5 19.8 0.6 112 chr2L 19562530 exon Tep5 + chr2L 19562586 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_12_19560001 chr2L_19560001 RAL-381 473 chr2L 19601580 19601595 chr2L 19601657 19601672 6 77 6.0 13.0 9.5 0.6 92 chr2L 19601580 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601672 intron,intron Lar +,CR44978 - chr2L_6_19600001 chr2L_19600001 RAL-381 474 chr2L 19620096 19620131 chr2L 19621079 19621120 jockey 17 982 7.5 5.5 6.5 2.3 1024 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621120 intron Lar + chr2L_17_19620001 chr2L_19620001 RAL-381 475 chr2L 19623931 19623964 chr2L 19624194 19624227 5 263 19.0 18.0 18.5 0.3 296 chr2L 19623931 intron Lar + chr2L 19624079 intron Lar + chr2L 19624227 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-381 476 chr2L 19638532 19638571 chr2L 19638620 19638659 13 88 12.5 13.5 13.0 0.9 127 chr2L 19638532 intron Lar + chr2L 19638596 intron Lar + chr2L 19638659 intron Lar + chr2L_13_19635001 chr2L_19635001 RAL-381 477 chr2L 19652570 19652604 chr2L 19674006 19674040 opus 9 21436 1.0 0.5 0.8 5.0 21470 chr2L 19652570 intron Lar + chr2L 19663305 intron Lar + chr2L 19674040 intron Lar + chr2L_9_19660001 chr2L_19660001 RAL-381 478 chr2L 19687558 19687562 chr2L 19687635 19687639 4 77 16.5 12.5 14.5 0.3 81 chr2L 19687558 intron Lar + chr2L 19687598 intron Lar + chr2L 19687639 intron Lar + chr2L_4_19685001 chr2L_19685001 RAL-381 479 chr2L 19703540 19703569 chr2L 19712676 19712705 roo 8 9136 4.0 6.0 5.0 1.3 9165 chr2L 19703540 intron Lar + chr2L 19708122 intron Lar + chr2L 19712705 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-381 480 chr2L 19737353 19737375 chr2L 19740822 19740844 1360 5 3467 15.0 11.0 13.0 0.4 3491 chr2L 19737353 intergenic Nf-YB + chr2L 19739098 intergenic not near genes chr2L 19740844 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-381 481 chr2L 19762817 19762837 chr2L 19763058 19763079 pogo 6 242 3.5 4.0 3.8 1.2 262 chr2L 19762817 intron fbp - chr2L 19762948 intron fbp - chr2L 19763079 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-381 482 chr2L 19837280 19837307 chr2L 19837360 19837387 11 80 22.5 18.0 20.2 0.5 107 chr2L 19837280 intron sick + chr2L 19837334 intron sick + chr2L 19837387 intron sick + chr2L_11_19835001 chr2L_19835001 RAL-381 483 chr2L 19911294 19911318 chr2L 19911382 19911406 7 88 13.0 14.0 13.5 0.5 112 chr2L 19911294 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911406 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 RAL-381 484 chr2L 19963501 19963512 chr2L 19963566 19963577 6 73 9.5 14.5 12.0 0.5 76 chr2L 19963501 exon CG16772 + chr2L 19963539 exon CG16772 + chr2L 19963577 exon CG16772 + chr2L_6_19960001 chr2L_19960001 RAL-381 485 chr2L 20005874 20005900 chr2L 20010948 20010976 flea 7 5075 1.5 3.0 2.2 2.2 5102 chr2L 20005874 intron CG43861 - chr2L 20008425 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-381 486 chr2L 20079525 20079544 chr2L 20079646 20079655 4 118 5.0 1.5 3.2 1.0 130 chr2L 20079525 intron,intron neb +,fok - chr2L 20079590 intron,intron neb +,fok - chr2L 20079655 intron,intron neb +,fok - chr2L_4_20075001 chr2L_20075001 RAL-381 487 chr2L 20085467 20085496 chr2L 20085559 20085588 8 91 6.5 7.5 7.0 1.0 121 chr2L 20085467 intron neb + chr2L 20085528 intron neb + chr2L 20085588 intron neb + chr2L_8_20085001 chr2L_20085001 RAL-381 488 chr2L 20124329 20124337 chr2L 20124407 20124415 4 78 4.0 4.5 4.2 0.8 86 chr2L 20124329 intergenic not near genes chr2L 20124372 intergenic not near genes chr2L 20124415 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-381 489 chr2L 20296508 20296541 chr2L 20296589 20296622 7 81 4.0 5.5 4.8 1.2 114 chr2L 20296508 intergenic CR43414 - chr2L 20296565 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_7_20295001 chr2L_20295001 RAL-381 490 chr2L 20303161 20303188 chr2L 20310629 20310641 blood 7 7466 0.0 0.5 0.2 5.8 7480 chr2L 20303161 intergenic not near genes chr2L 20306901 intergenic not near genes chr2L 20310641 intergenic not near genes chr2L_7_20305001 chr2L_20305001 RAL-381 491 chr2L 20370869 20370900 chr2L 20371069 20371100 6 200 14.0 12.5 13.2 0.4 231 chr2L 20370869 intergenic not near genes chr2L 20370984 intergenic not near genes chr2L 20371100 intergenic not near genes chr2L_6_20370001 chr2L_20370001 RAL-381 492 chr2L 20372851 20372875 chr2L 20372930 20372953 6 78 19.0 17.5 18.2 0.3 102 chr2L 20372851 exon Ugt37a1 - chr2L 20372902 exon Ugt37a1 - chr2L 20372953 exon Ugt37a1 - chr2L_6_20370001 chr2L_20370001 RAL-381 493 chr2L 20424061 20424074 chr2L 20424146 20424153 5 84 9.0 12.5 10.8 0.4 92 chr2L 20424061 intron CG15130 - chr2L 20424107 intron CG15130 - chr2L 20424153 intron CG15130 - chr2L_5_20420001 chr2L_20420001 RAL-381 494 chr2L 20492756 20492840 chr2L 20493106 20493188 4 350 5.5 12.5 9.0 0.4 432 chr2L 20492756 intergenic not near genes chr2L 20492972 intergenic not near genes chr2L 20493188 intergenic not near genes chr2L_4_20490001 chr2L_20490001 RAL-381 495 chr2L 20498688 20498706 chr2L 20498787 20498805 8 99 8.0 6.5 7.2 1.0 117 chr2L 20498688 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-381 496 chr2L 20568660 20568684 chr2L 20569050 20569074 X-element 10 390 2.0 2.0 2.0 3.3 414 chr2L 20568660 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569074 intron CR45347 + chr2L_10_20565001 chr2L_20565001 RAL-381 497 chr2L 20571574 20571603 chr2L 20571651 20571679 6 77 5.0 3.5 4.2 1.2 105 chr2L 20571574 intron CR45347 + chr2L 20571626 intron CR45347 + chr2L 20571679 intron CR45347 + chr2L_6_20570001 chr2L_20570001 RAL-381 498 chr2L 20576217 20576251 chr2L 20583685 20583717 blood 12 7467 3.5 4.5 4.0 2.4 7500 chr2L 20576217 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_12_20575001 chr2L_20575001 RAL-381 499 chr2L 20588553 20588576 chr2L 20588640 20588657 6 84 9.0 13.5 11.2 0.5 104 chr2L 20588553 intron CR44909 - chr2L 20588605 intron CR44909 - chr2L 20588657 intron CR44909 - chr2L_6_20585001 chr2L_20585001 RAL-381 500 chr2L 20618189 20618208 chr2L 20618392 20618411 4 200 15.0 13.0 14.0 0.3 222 chr2L 20618189 intron CR44909 - chr2L 20618300 intron CR44909 - chr2L 20618411 intron,3` UTR CR44909 -,mir-288 - chr2L_4_20615001 chr2L_20615001 RAL-381 501 chr2L 20668690 20668722 chr2L 20668766 20668796 12 76 2.5 2.5 2.5 3.4 106 chr2L 20668690 intron CG31678 - chr2L 20668743 intron CG31678 - chr2L 20668796 intron CG31678 - chr2L_12_20665001 chr2L_20665001 RAL-381 502 chr2L 20704393 20704420 chr2L 20707311 20707338 8 2920 31.5 28.5 30.0 0.3 2945 chr2L 20704393 intron Hr38 - chr2L 20705866 intron Hr38 - chr2L 20707338 intron Hr38 - chr2L_8_20705001 chr2L_20705001 RAL-381 503 chr2L 20748120 20748125 chr2L 20748197 20748202 4 76 0.0 1.5 0.8 2.2 82 chr2L 20748120 intron Fs(2)Ket + chr2L 20748161 3` UTR Fs(2)Ket + chr2L 20748202 3` UTR Fs(2)Ket + chr2L_4_20745001 chr2L_20745001 RAL-381 504 chr2L 20792598 20792630 chr2L 20792713 20792745 8 115 10.0 10.5 10.2 0.7 147 chr2L 20792598 intron vari - chr2L 20792672 intron vari - chr2L 20792745 intron vari - chr2L_8_20790001 chr2L_20790001 RAL-381 505 chr2L 20832220 20832249 chr2L 20832296 20832324 12 74 15.0 12.0 13.5 0.8 104 chr2L 20832220 exon CG31674 + chr2L 20832272 exon CG31674 + chr2L 20832324 intron CG31674 + chr2L_12_20830001 chr2L_20830001 RAL-381 506 chr2L 20840026 20840055 chr2L 20840238 20840267 12 211 18.0 4.5 11.2 1.0 241 chr2L 20840026 intergenic not near genes chr2L 20840146 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_12_20840001 chr2L_20840001 RAL-381 507 chr2L 20840232 20840258 chr2L 20840658 20840682 7 425 6.5 12.0 9.2 0.7 450 chr2L 20840232 intergenic not near genes chr2L 20840457 intergenic CG31676 + chr2L 20840682 intergenic CG31676 + chr2L_7_20840001 chr2L_20840001 RAL-381 508 chr2L 20891536 20891543 chr2L 20896637 20896644 jockey 4 5101 3.5 4.5 4.0 0.8 5108 chr2L 20891536 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896644 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 RAL-381 509 chr2L 20901478 20901488 chr2L 20902642 20902652 1360 6 1164 1.0 9.0 5.0 1.0 1174 chr2L 20901478 intron,intron CG43739 -,sky - chr2L 20902065 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-381 510 chr2L 20911028 20911061 chr2L 20911104 20911137 6 72 13.5 14.5 14.0 0.4 109 chr2L 20911028 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911137 intron,intron CG43739 -,sky - chr2L_6_20910001 chr2L_20910001 RAL-381 511 chr2L 20976672 20976682 chr2L 20982480 20982490 X-element 5 5808 1.0 7.0 4.0 1.0 5818 chr2L 20976672 intron CG42238 - chr2L 20979581 intron CG42238 - chr2L 20982490 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-381 512 chr2L 20991048 20991063 chr2L 20991126 20991141 6 78 17.5 16.5 17.0 0.3 93 chr2L 20991048 intron CG42238 - chr2L 20991094 intron CG42238 - chr2L 20991141 intron CG42238 - chr2L_6_20990001 chr2L_20990001 RAL-381 513 chr2L 21020272 21020310 chr2L 21023949 21023987 NOF 19 3675 3.5 6.5 5.0 3.2 3715 chr2L 21020272 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_19_21020001 chr2L_21020001 RAL-381 514 chr2L 21041136 21041160 chr2L 21049397 21049421 Tirant 6 8261 3.0 6.5 4.8 1.0 8285 chr2L 21041136 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049421 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-381 515 chr2L 21074916 21074940 chr2L 21075007 21075027 6 90 2.0 2.0 2.0 2.0 111 chr2L 21074916 intergenic tadr + chr2L 21074972 intergenic tadr + chr2L 21075027 intergenic tadr + chr2L_6_21070001 chr2L_21070001 RAL-381 516 chr2L 21158883 21158911 chr2L 21158960 21158988 4 74 14.5 13.0 13.8 0.3 105 chr2L 21158883 intergenic CG9248 +,CG9249 - chr2L 21158936 5` UTR CG9248 + chr2L 21158988 5` UTR CG9248 + chr2L_4_21155001 chr2L_21155001 RAL-381 517 chr2L 21240095 21240108 chr2L 21240201 21240212 4 106 11.0 15.0 13.0 0.3 117 chr2L 21240095 intron Hr39 + chr2L 21240154 intron Hr39 + chr2L 21240212 intron Hr39 + chr2L_4_21240001 chr2L_21240001 RAL-381 518 chr2L 21240930 21240961 chr2L 21241019 21241050 9 87 17.0 16.0 16.5 0.5 120 chr2L 21240930 intron Hr39 + chr2L 21240990 intron Hr39 + chr2L 21241050 intron Hr39 + chr2L_9_21240001 chr2L_21240001 RAL-381 519 chr2L 21307471 21307498 chr2L 21307552 21307568 4 79 2.5 3.0 2.8 1.1 97 chr2L 21307471 intron Mio - chr2L 21307520 intron Mio - chr2L 21307568 intron Mio - chr2L_4_21305001 chr2L_21305001 RAL-381 520 chr2L 21597029 21597047 chr2L 21604771 21604791 roo 5 7744 2.5 3.0 2.8 1.3 7762 chr2L 21597029 intergenic not near genes chr2L 21600910 intergenic not near genes chr2L 21604791 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-381 521 chr2L 21684302 21684326 chr2L 21684565 21684589 7 263 6.0 1.5 3.8 1.5 287 chr2L 21684302 intron CG31619 + chr2L 21684446 intron CG31619 + chr2L 21684589 5` UTR CG31619 + chr2L_7_21680001 chr2L_21680001 RAL-381 522 chr2L 21755492 21755523 chr2L 21755616 21755647 5 124 12.5 6.5 9.5 0.5 155 chr2L 21755492 intron step - chr2L 21755570 intron step - chr2L 21755647 intron step - chr2L_5_21755001 chr2L_21755001 RAL-381 523 chr2L 21771235 21771255 chr2L 21771342 21771362 4 107 10.5 12.5 11.5 0.3 127 chr2L 21771235 intron CG31612 - chr2L 21771298 intron CG31612 - chr2L 21771362 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-381 524 chr2L 21898846 21898874 chr2L 21898974 21898994 7 127 5.0 9.5 7.2 0.9 148 chr2L 21898846 intergenic not near genes chr2L 21898920 intergenic not near genes chr2L 21898994 intergenic not near genes chr2L_7_21895001 chr2L_21895001 RAL-381 525 chr2L 21981682 21981714 chr2L 21990847 21990879 roo 12 9162 3.0 4.0 3.5 2.7 9197 chr2L 21981682 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_12_21985001 chr2L_21985001 RAL-381 526 chr2L 22025829 22025842 chr2L 22025907 22025921 4 79 12.0 10.0 11.0 0.3 92 chr2L 22025829 intergenic tio + chr2L 22025875 intergenic tio + chr2L 22025921 intergenic tio + chr2L_4_22025001 chr2L_22025001 RAL-381 527 chr2L 22035221 22035237 chr2L 22035285 22035314 5 73 7.0 12.5 9.8 0.5 93 chr2L 22035221 intergenic not near genes chr2L 22035268 intergenic not near genes chr2L 22035314 intergenic not near genes chr2L_5_22035001 chr2L_22035001 RAL-381 528 chr2L 22326670 22326689 chr2L 22326752 22326771 8 82 6.5 6.0 6.2 1.1 101 chr2L 22326670 intron CG17018 + chr2L 22326720 intron CG17018 + chr2L 22326771 intron CG17018 + chr2L_8_22325001 chr2L_22325001 RAL-381 529 chr2L 22679807 22679821 chr2L 22684574 22684593 F-element 6 4771 7.0 6.5 6.8 0.8 4786 chr2L 22679807 intron CG40006 - chr2L 22682200 intron CG40006 - chr2L 22684593 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-381 530 chr2L 22727627 22727635 chr2L 22727761 22727761 4 132 5.0 6.0 5.5 0.6 134 chr2L 22727627 intron CG40006 - chr2L 22727694 intron CG40006 - chr2L 22727761 intron CG40006 - chr2L_4_22725001 chr2L_22725001 RAL-381 531 chr2L 22776425 22776444 chr2L 22778214 22778233 S-element 4 1789 0.0 1.5 0.8 2.2 1808 chr2L 22776425 intergenic not near genes chr2L 22777329 intergenic not near genes chr2L 22778233 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-381 532 chr2L 23006505 23006538 chr2L 23007181 23007214 Osvaldo 6 676 15.5 12.0 13.8 0.4 709 chr2L 23006505 intron Cht3 - chr2L 23006860 intron Cht3 - chr2L 23007214 intron Cht3 - chr2L_6_23005001 chr2L_23005001 RAL-381 533 chr2L 23168858 23168877 chr2L 23168931 23168938 4 68 7.5 3.5 5.5 0.6 80 chr2L 23168858 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168898 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168938 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-381 534 chr2R 529321 529356 chr2R 537946 537981 Max-element 13 8624 3.0 3.5 3.2 3.1 8660 chr2R 529321 intron CG40378 + chr2R 533651 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_13_530001 chr2R_530001 RAL-381 535 chr2R 1082366 1082382 chr2R 1087142 1087158 Doc 9 4776 8.0 5.0 6.5 1.2 4792 chr2R 1082366 intron rl + chr2R 1084762 intron rl + chr2R 1087158 intron rl + chr2R_9_1080001 chr2R_1080001 RAL-381 536 chr2R 1365864 1365890 chr2R 1365976 1366001 5 112 6.0 6.0 6.0 0.7 137 chr2R 1365864 intron l(2)41Ab + chr2R 1365932 intron l(2)41Ab + chr2R 1366001 intron l(2)41Ab + chr2R_5_1365001 chr2R_1365001 RAL-381 537 chr2R 1880704 1880723 chr2R 5639655 5639655 4 3758946 13.5 23.5 18.5 0.2 3758951 chr2R 1880704 intron CG17684 - chr2R 3760180 intergenic not near genes chr2R 5639655 intergenic not near genes chr2R_4_3760001 chr2R_3760001 RAL-381 538 chr2R 2498985 2499016 chr2R 2508132 2508163 roo 7 9146 3.0 2.5 2.8 1.8 9178 chr2R 2498985 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-381 539 chr2R 2508309 2508338 chr2R 2508447 2508476 6 137 1.5 2.5 2.0 2.0 167 chr2R 2508309 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508476 intron MFS17 - chr2R_6_2505001 chr2R_2505001 RAL-381 540 chr2R 3144093 3144107 chr2R 3393366 3393384 Doc 8 249277 12.5 11.5 12.0 0.6 249291 chr2R 3144093 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393384 intergenic not near genes chr2R_8_3265001 chr2R_3265001 RAL-381 541 chr2R 3291695 3291954 chr2R 3914839 3915123 6 623161 14.0 22.5 18.2 0.3 623428 chr2R 3291695 intergenic not near genes chr2R 3603409 intergenic not near genes chr2R 3915123 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-381 542 chr2R 3293750 3293767 chr2R 3293828 3293845 6 78 1.0 2.0 1.5 2.4 95 chr2R 3293750 intergenic not near genes chr2R 3293798 intergenic not near genes chr2R 3293845 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-381 543 chr2R 3399233 3399261 chr2R 3399319 3399347 6 86 6.0 9.0 7.5 0.7 114 chr2R 3399233 intergenic not near genes chr2R 3399290 intergenic not near genes chr2R 3399347 intergenic not near genes chr2R_6_3395001 chr2R_3395001 RAL-381 544 chr2R 4312966 4312987 chr2R 4313050 4313071 4 84 7.0 10.0 8.5 0.4 105 chr2R 4312966 intergenic not near genes chr2R 4313018 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_4_4310001 chr2R_4310001 RAL-381 545 chr2R 4430386 4430402 chr2R 4430480 4430496 7 93 17.0 12.0 14.5 0.5 110 chr2R 4430386 intron Gprk1 - chr2R 4430441 intron Gprk1 - chr2R 4430496 intron Gprk1 - chr2R_7_4430001 chr2R_4430001 RAL-381 546 chr2R 4602968 4602989 chr2R 4603056 4603081 6 89 18.5 12.0 15.2 0.4 113 chr2R 4602968 intron p120ctn + chr2R 4603024 intron p120ctn + chr2R 4603081 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-381 547 chr2R 4604557 4604580 chr2R 4604635 4604659 11 79 7.5 10.0 8.8 1.1 102 chr2R 4604557 intron p120ctn + chr2R 4604608 intron p120ctn + chr2R 4604659 intron p120ctn + chr2R_11_4600001 chr2R_4600001 RAL-381 548 chr2R 4622950 4622988 chr2R 4624109 4624147 1360 17 1157 2.5 4.0 3.2 4.0 1197 chr2R 4622950 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_17_4620001 chr2R_4620001 RAL-381 549 chr2R 4624644 4624656 chr2R 4626548 4626561 Bica 7 1904 22.0 18.5 20.2 0.3 1917 chr2R 4624644 intergenic not near genes chr2R 4625602 intergenic not near genes chr2R 4626561 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-381 550 chr2R 4656784 4656812 chr2R 4656887 4656913 4 102 32.0 26.0 29.0 0.1 129 chr2R 4656784 intergenic not near genes chr2R 4656848 intergenic not near genes chr2R 4656913 intergenic not near genes chr2R_4_4655001 chr2R_4655001 RAL-381 551 chr2R 4704819 4704847 chr2R 4705135 4705163 7 312 13.5 11.0 12.2 0.5 344 chr2R 4704819 intron Nipped-B - chr2R 4704991 intron Nipped-B - chr2R 4705163 intron Nipped-B - chr2R_7_4700001 chr2R_4700001 RAL-381 552 chr2R 4750343 4750374 chr2R 4751500 4751509 1360 6 1152 0.5 3.5 2.0 2.0 1166 chr2R 4750343 intron conu + chr2R 4750926 intron conu + chr2R 4751509 intron conu + chr2R_6_4750001 chr2R_4750001 RAL-381 553 chr2R 4933367 4933392 chr2R 4933927 4933948 9 562 11.5 15.0 13.2 0.6 581 chr2R 4933367 intron Ir41a + chr2R 4933658 intron Ir41a + chr2R 4933948 intron Ir41a + chr2R_9_4930001 chr2R_4930001 RAL-381 554 chr2R 4940959 4940976 chr2R 4943409 4943426 4 2450 11.0 24.5 17.8 0.2 2467 chr2R 4940959 intron Ir41a + chr2R 4942192 intron Ir41a + chr2R 4943426 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-381 555 chr2R 5019277 5019295 chr2R 5019363 5019381 6 86 4.0 1.5 2.8 1.6 104 chr2R 5019277 intron Ir41a + chr2R 5019329 intron Ir41a + chr2R 5019381 intron Ir41a + chr2R_6_5015001 chr2R_5015001 RAL-381 556 chr2R 5038527 5038536 chr2R 5039324 5039333 4 796 4.5 4.0 4.2 0.8 806 chr2R 5038527 intergenic not near genes chr2R 5038930 intergenic not near genes chr2R 5039333 intergenic not near genes chr2R_4_5035001 chr2R_5035001 RAL-381 557 chr2R 5040751 5040765 chr2R 5041241 5041255 5 490 0.5 3.5 2.0 1.7 504 chr2R 5040751 intergenic not near genes chr2R 5041003 intergenic not near genes chr2R 5041255 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-381 558 chr2R 5080794 5080808 chr2R 5080885 5080899 4 91 9.0 9.0 9.0 0.4 105 chr2R 5080794 intergenic not near genes chr2R 5080846 intergenic not near genes chr2R 5080899 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-381 559 chr2R 5087184 5087208 chr2R 5087282 5087310 6 100 20.0 19.0 19.5 0.3 126 chr2R 5087184 intergenic not near genes chr2R 5087247 intergenic not near genes chr2R 5087310 intergenic not near genes chr2R_6_5085001 chr2R_5085001 RAL-381 560 chr2R 5102886 5102898 chr2R 5103183 5103203 4 302 18.0 14.0 16.0 0.2 317 chr2R 5102886 intergenic not near genes chr2R 5103044 intergenic not near genes chr2R 5103203 intergenic not near genes chr2R_4_5100001 chr2R_5100001 RAL-381 561 chr2R 5237355 5237369 chr2R 5237436 5237451 6 82 4.0 0.0 2.0 2.0 96 chr2R 5237355 intron Nipped-A - chr2R 5237403 intron Nipped-A - chr2R 5237451 intron Nipped-A - chr2R_6_5235001 chr2R_5235001 RAL-381 562 chr2R 5472373 5472394 chr2R 5472462 5472488 4 92 12.0 15.0 13.5 0.3 115 chr2R 5472373 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-381 563 chr2R 5476354 5476383 chr2R 5476898 5476927 4 542 15.5 10.5 13.0 0.3 573 chr2R 5476354 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476927 intron CG30440 - chr2R_4_5475001 chr2R_5475001 RAL-381 564 chr2R 5509520 5509545 chr2R 5509615 5509641 9 94 10.5 12.5 11.5 0.7 121 chr2R 5509520 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509641 intron CG30438 + chr2R_9_5505001 chr2R_5505001 RAL-381 565 chr2R 5541937 5541967 chr2R 5542170 5542200 4 233 1.5 5.5 3.5 0.9 263 chr2R 5541937 intron CG30438 + chr2R 5542068 intron CG30438 + chr2R 5542200 intron CG30438 + chr2R_4_5540001 chr2R_5540001 RAL-381 566 chr2R 5543199 5543213 chr2R 5547283 5547297 invader1 4 4084 0.5 2.5 1.5 1.6 4098 chr2R 5543199 intron CG30438 + chr2R 5545248 intron CG30438 + chr2R 5547297 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-381 567 chr2R 5621375 5621380 chr2R 5621455 5621460 4 80 20.5 16.0 18.2 0.2 85 chr2R 5621375 intergenic not near genes chr2R 5621418 intergenic not near genes chr2R 5621460 intergenic not near genes chr2R_4_5620001 chr2R_5620001 RAL-381 568 chr2R 5664282 5664306 chr2R 5664362 5664386 7 79 19.5 21.5 20.5 0.3 104 chr2R 5664282 5` UTR CR45472 + chr2R 5664334 intron CR45472 + chr2R 5664386 intron CR45472 + chr2R_7_5660001 chr2R_5660001 RAL-381 569 chr2R 5800255 5800273 chr2R 5800346 5800363 6 91 14.0 7.5 10.8 0.5 108 chr2R 5800255 intergenic not near genes chr2R 5800309 intergenic not near genes chr2R 5800363 intergenic not near genes chr2R_6_5800001 chr2R_5800001 RAL-381 570 chr2R 5859977 5860009 chr2R 5860089 5860121 12 111 15.0 14.0 14.5 0.8 144 chr2R 5859977 3` UTR dpr12 + chr2R 5860049 3` UTR dpr12 + chr2R 5860121 3` UTR dpr12 + chr2R_12_5860001 chr2R_5860001 RAL-381 571 chr2R 5869277 5869304 chr2R 5874353 5874380 flea 9 5074 3.5 4.0 3.8 1.9 5103 chr2R 5869277 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_9_5870001 chr2R_5870001 RAL-381 572 chr2R 5876866 5876905 chr2R 5876968 5877006 5 102 17.0 15.5 16.2 0.3 140 chr2R 5876866 intergenic not near genes chr2R 5876936 intergenic not near genes chr2R 5877006 intergenic not near genes chr2R_5_5875001 chr2R_5875001 RAL-381 573 chr2R 5978704 5978723 chr2R 5978789 5978803 6 84 9.5 9.5 9.5 0.6 99 chr2R 5978704 intron mle - chr2R 5978754 intron mle - chr2R 5978803 intron mle - chr2R_6_5975001 chr2R_5975001 RAL-381 574 chr2R 6008682 6008700 chr2R 6008773 6008791 6 91 10.0 8.5 9.2 0.6 109 chr2R 6008682 intron Src42A + chr2R 6008736 intron Src42A + chr2R 6008791 intron Src42A + chr2R_6_6005001 chr2R_6005001 RAL-381 575 chr2R 6065424 6065434 chr2R 6065498 6065513 4 78 12.5 9.5 11.0 0.3 89 chr2R 6065424 intron CCHa2-R + chr2R 6065468 intron CCHa2-R + chr2R 6065513 intron CCHa2-R + chr2R_4_6065001 chr2R_6065001 RAL-381 576 chr2R 6071962 6071990 chr2R 6072061 6072088 10 99 10.0 11.5 10.8 0.8 126 chr2R 6071962 intergenic not near genes chr2R 6072025 intergenic not near genes chr2R 6072088 intergenic not near genes chr2R_10_6070001 chr2R_6070001 RAL-381 577 chr2R 6096717 6096745 chr2R 6101912 6101942 BS 9 5194 7.0 4.5 5.8 1.3 5225 chr2R 6096717 intron EcR - chr2R 6099330 intron EcR - chr2R 6101942 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-381 578 chr2R 6129326 6129352 chr2R 6129404 6129430 4 78 8.0 7.0 7.5 0.5 104 chr2R 6129326 intron EcR - chr2R 6129378 intron EcR - chr2R 6129430 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-381 579 chr2R 6538386 6538408 chr2R 6538464 6538486 7 78 15.0 12.5 13.8 0.5 100 chr2R 6538386 intron jing + chr2R 6538436 intron jing + chr2R 6538486 intron jing + chr2R_7_6535001 chr2R_6535001 RAL-381 580 chr2R 6541076 6541104 chr2R 6541152 6541180 6 76 7.0 8.0 7.5 0.7 104 chr2R 6541076 intron jing + chr2R 6541128 intron jing + chr2R 6541180 intron jing + chr2R_6_6540001 chr2R_6540001 RAL-381 581 chr2R 6552001 6552020 chr2R 6552104 6552123 4 103 7.5 9.5 8.5 0.4 122 chr2R 6552001 intron jing + chr2R 6552062 intron jing + chr2R 6552123 intron jing + chr2R_4_6550001 chr2R_6550001 RAL-381 582 chr2R 6579778 6579804 chr2R 6584864 6584891 flea 4 5086 0.5 1.0 0.8 2.2 5113 chr2R 6579778 intron jing + chr2R 6582334 intron jing + chr2R 6584891 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-381 583 chr2R 6633196 6633228 chr2R 6633273 6633305 4 77 5.0 3.0 4.0 0.8 109 chr2R 6633196 intergenic Vha16-1 -,Trap1 - chr2R 6633250 intergenic Vha16-1 -,Trap1 - chr2R 6633305 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-381 584 chr2R 6646804 6646827 chr2R 6647076 6647100 7 272 7.0 7.0 7.0 0.9 296 chr2R 6646804 intergenic not near genes chr2R 6646952 intergenic not near genes chr2R 6647100 intergenic not near genes chr2R_7_6645001 chr2R_6645001 RAL-381 585 chr2R 6706979 6707001 chr2R 6707240 6707262 5 261 1.5 15.0 8.2 0.5 283 chr2R 6706979 intron,intron CG3409 -,CG45092 - chr2R 6707120 intron,intron CG3409 -,CG45092 - chr2R 6707262 intron,intron,3` UTR CG3409 -,CG45092 -,mir-4975 - chr2R_5_6705001 chr2R_6705001 RAL-381 586 chr2R 6738849 6738879 chr2R 6738931 6738961 7 82 5.0 6.0 5.5 1.1 112 chr2R 6738849 intron l(2)01289 - chr2R 6738905 intron l(2)01289 - chr2R 6738961 intron l(2)01289 - chr2R_7_6735001 chr2R_6735001 RAL-381 587 chr2R 6884502 6884520 chr2R 6884585 6884600 5 82 21.5 14.0 17.8 0.3 98 chr2R 6884502 intron Spn42Dd + chr2R 6884551 exon Spn42Dd + chr2R 6884600 exon Spn42Dd + chr2R_5_6880001 chr2R_6880001 RAL-381 588 chr2R 6895420 6895437 chr2R 6895497 6895516 5 79 9.5 15.0 12.2 0.4 96 chr2R 6895420 intron CG30158 + chr2R 6895468 intron CG30158 + chr2R 6895516 intron CG30158 + chr2R_5_6895001 chr2R_6895001 RAL-381 589 chr2R 6952171 6952185 chr2R 6959751 6959765 opus 4 7580 6.0 1.5 3.8 0.8 7594 chr2R 6952171 intron,intron mim -,CheB42c - chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959765 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-381 590 chr2R 6978806 6978839 chr2R 6978948 6978981 11 142 3.0 5.5 4.2 2.1 175 chr2R 6978806 intron vimar - chr2R 6978894 intron vimar - chr2R 6978981 intron vimar - chr2R_11_6975001 chr2R_6975001 RAL-381 591 chr2R 7067595 7067624 chr2R 7067679 7067707 5 84 3.5 6.0 4.8 0.9 112 chr2R 7067595 intergenic not near genes chr2R 7067651 intergenic not near genes chr2R 7067707 intergenic not near genes chr2R_5_7065001 chr2R_7065001 RAL-381 592 chr2R 7091210 7091238 chr2R 7091292 7091320 4 82 1.5 1.0 1.2 1.8 110 chr2R 7091210 intron esn + chr2R 7091265 intron esn + chr2R 7091320 intron esn + chr2R_4_7090001 chr2R_7090001 RAL-381 593 chr2R 7164278 7164288 chr2R 7164469 7164479 4 191 3.5 11.5 7.5 0.5 201 chr2R 7164278 intron pk + chr2R 7164378 intron pk + chr2R 7164479 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-381 594 chr2R 7226639 7226671 chr2R 7226734 7226763 5 92 10.5 12.0 11.2 0.4 124 chr2R 7226639 intergenic not near genes chr2R 7226701 intergenic not near genes chr2R 7226763 intergenic not near genes chr2R_5_7225001 chr2R_7225001 RAL-381 595 chr2R 7235818 7235830 chr2R 7240910 7240922 jockey 8 5091 9.0 3.0 6.0 1.1 5104 chr2R 7235818 intergenic not near genes chr2R 7238370 intergenic not near genes chr2R 7240922 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-381 596 chr2R 7235837 7235849 chr2R 7240906 7240939 jockey 8 5088 6.0 3.0 4.5 1.5 5102 chr2R 7235837 intergenic not near genes chr2R 7238388 intergenic not near genes chr2R 7240939 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-381 597 chr2R 7290196 7290224 chr2R 7290298 7290326 5 102 3.5 3.5 3.5 1.1 130 chr2R 7290196 intron pwn + chr2R 7290261 intron pwn + chr2R 7290326 intron pwn + chr2R_5_7290001 chr2R_7290001 RAL-381 598 chr2R 7303153 7303163 chr2R 7303264 7303274 4 111 13.5 10.0 11.8 0.3 121 chr2R 7303153 intergenic not near genes chr2R 7303214 intergenic not near genes chr2R 7303274 intergenic not near genes chr2R_4_7300001 chr2R_7300001 RAL-381 599 chr2R 7310761 7310795 chr2R 7310843 7310877 13 79 5.0 5.0 5.0 2.2 116 chr2R 7310761 intergenic not near genes chr2R 7310819 intergenic not near genes chr2R 7310877 intergenic not near genes chr2R_13_7310001 chr2R_7310001 RAL-381 600 chr2R 7359847 7359858 chr2R 7360107 7360111 4 258 18.5 12.5 15.5 0.2 264 chr2R 7359847 intron Dscam1 - chr2R 7359979 intron Dscam1 - chr2R 7360111 intron Dscam1 - chr2R_4_7355001 chr2R_7355001 RAL-381 601 chr2R 7411305 7411328 chr2R 7411391 7411414 5 85 11.0 9.0 10.0 0.5 109 chr2R 7411305 intergenic not near genes chr2R 7411360 intergenic not near genes chr2R 7411414 intergenic not near genes chr2R_5_7410001 chr2R_7410001 RAL-381 602 chr2R 7417903 7418149 chr2R 7417989 7418228 4 84 5.5 9.0 7.2 0.5 325 chr2R 7417903 intergenic not near genes chr2R 7418066 intergenic not near genes chr2R 7418228 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-381 603 chr2R 7434899 7434905 chr2R 7439200 7439206 Juan 4 4301 2.0 6.0 4.0 0.8 4307 chr2R 7434899 intergenic so + chr2R 7437052 intergenic not near genes chr2R 7439206 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-381 604 chr2R 7459285 7459292 chr2R 7459373 7459380 4 88 6.5 6.0 6.2 0.6 95 chr2R 7459285 intergenic CG11141 -,Inos - chr2R 7459332 intergenic CG11141 -,Inos - chr2R 7459380 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-381 605 chr2R 7551695 7551715 chr2R 7551785 7551806 5 91 11.5 16.0 13.8 0.3 111 chr2R 7551695 intron Corin + chr2R 7551750 intron Corin + chr2R 7551806 intron Corin + chr2R_5_7550001 chr2R_7550001 RAL-381 606 chr2R 7606291 7606318 chr2R 7606375 7606402 7 83 10.5 8.0 9.2 0.7 111 chr2R 7606291 intron CG1358 - chr2R 7606346 intron CG1358 - chr2R 7606402 intron CG1358 - chr2R_7_7605001 chr2R_7605001 RAL-381 607 chr2R 7608418 7608435 chr2R 7613606 7613631 I-element 7 5200 2.5 2.0 2.2 2.2 5213 chr2R 7608418 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613631 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-381 608 chr2R 7642878 7642886 chr2R 7642958 7642960 4 78 15.5 18.0 16.8 0.2 82 chr2R 7642878 intron CG43340 + chr2R 7642919 intron CG43340 + chr2R 7642960 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-381 609 chr2R 7692015 7692027 chr2R 7692096 7692108 4 81 5.5 3.5 4.5 0.7 93 chr2R 7692015 intron CG1399 - chr2R 7692062 intron CG1399 - chr2R 7692108 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-381 610 chr2R 7708349 7708377 chr2R 7708447 7708474 6 95 13.5 13.0 13.2 0.4 125 chr2R 7708349 intron tor - chr2R 7708412 intron tor - chr2R 7708474 intron tor - chr2R_6_7705001 chr2R_7705001 RAL-381 611 chr2R 7714079 7714115 chr2R 7714155 7714191 9 76 6.5 7.0 6.8 1.2 112 chr2R 7714079 exon CG1942 + chr2R 7714135 3` UTR CG1942 + chr2R 7714191 intergenic CG1942 + chr2R_9_7710001 chr2R_7710001 RAL-381 612 chr2R 7730104 7730113 chr2R 7730170 7730193 6 75 12.5 13.0 12.8 0.4 89 chr2R 7730104 intron CG18812 - chr2R 7730148 intron CG18812 - chr2R 7730193 intron CG18812 - chr2R_6_7730001 chr2R_7730001 RAL-381 613 chr2R 7760293 7760306 chr2R 7760425 7760442 5 134 13.5 17.5 15.5 0.3 149 chr2R 7760293 intron,intron CG30497 -,CG45093 - chr2R 7760368 intron,intron CG30497 -,CG45093 - chr2R 7760442 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-381 614 chr2R 7765771 7765785 chr2R 7765963 7765977 5 192 5.5 8.0 6.8 0.6 206 chr2R 7765771 intron,intron CG30497 -,CG45093 - chr2R 7765874 intron,intron CG30497 -,CG45093 - chr2R 7765977 intron,intron CG30497 -,CG45093 - chr2R_5_7765001 chr2R_7765001 RAL-381 615 chr2R 7815688 7815698 chr2R 7822157 7822167 Burdock 5 6469 2.5 5.0 3.8 1.0 6479 chr2R 7815688 intergenic CG1882 + chr2R 7818928 intergenic not near genes chr2R 7822167 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-381 616 chr2R 7869190 7869204 chr2R 7873976 7873989 Doc 7 4785 7.0 4.5 5.8 1.0 4799 chr2R 7869190 intron Dgk - chr2R 7871590 intron Dgk - chr2R 7873989 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-381 617 chr2R 7942182 7942205 chr2R 7942270 7942293 4 90 4.0 6.5 5.2 0.6 111 chr2R 7942182 3` UTR CG14764 - chr2R 7942238 3` UTR CG14764 - chr2R 7942293 3` UTR CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-381 618 chr2R 7942947 7942971 chr2R 7943032 7943056 7 82 7.0 5.5 6.2 1.0 109 chr2R 7942947 intron CG14764 - chr2R 7943002 intron CG14764 - chr2R 7943056 intron CG14764 - chr2R_7_7940001 chr2R_7940001 RAL-381 619 chr2R 7997439 7997451 chr2R 7997545 7997557 4 106 8.0 4.0 6.0 0.6 118 chr2R 7997439 intron Hey - chr2R 7997498 intron Hey - chr2R 7997557 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-381 620 chr2R 8015653 8015683 chr2R 8017673 8017706 7 2020 1.5 3.0 2.2 2.2 2053 chr2R 8015653 intergenic mir-4981 + chr2R 8016680 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-381 621 chr2R 8038525 8038538 chr2R 8038601 8038614 4 76 11.5 11.5 11.5 0.3 89 chr2R 8038525 intron Optix + chr2R 8038570 intron Optix + chr2R 8038614 intron Optix + chr2R_4_8035001 chr2R_8035001 RAL-381 622 chr2R 8076678 8076708 chr2R 8076758 8076788 8 80 10.0 8.0 9.0 0.8 110 chr2R 8076678 intron lig + chr2R 8076733 intron lig + chr2R 8076788 intron lig + chr2R_8_8075001 chr2R_8075001 RAL-381 623 chr2R 8089280 8089288 chr2R 8089362 8089374 4 85 4.0 7.5 5.8 0.6 94 chr2R 8089280 3` UTR sut2 + chr2R 8089327 intergenic sut2 +,sut3 + chr2R 8089374 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-381 624 chr2R 8157904 8157911 chr2R 8157988 8157999 4 87 7.5 6.0 6.8 0.5 95 chr2R 8157904 5` UTR CR44068 + chr2R 8157952 5` UTR CR44068 + chr2R 8157999 5` UTR CR44068 + chr2R_4_8155001 chr2R_8155001 RAL-381 625 chr2R 8187330 8187357 chr2R 8187417 8187444 4 87 5.0 2.5 3.8 0.8 114 chr2R 8187330 intron LRP1 + chr2R 8187387 intron LRP1 + chr2R 8187444 intron LRP1 + chr2R_4_8185001 chr2R_8185001 RAL-381 626 chr2R 8330861 8330894 chr2R 8331347 8331380 roo 10 486 6.0 6.5 6.2 1.4 519 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_10_8330001 chr2R_8330001 RAL-381 627 chr2R 8387429 8387457 chr2R 8387507 8387535 6 78 13.5 13.0 13.2 0.4 106 chr2R 8387429 intron pdm3 + chr2R 8387482 intron pdm3 + chr2R 8387535 intron pdm3 + chr2R_6_8385001 chr2R_8385001 RAL-381 628 chr2R 8398208 8398240 chr2R 8402989 8403000 Doc 7 4777 4.5 2.0 3.2 1.7 4792 chr2R 8398208 intron CG2121 - chr2R 8400604 intron CG2121 - chr2R 8403000 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-381 629 chr2R 8406080 8406106 chr2R 8406157 8406183 6 77 9.5 8.0 8.8 0.6 103 chr2R 8406080 intron CG2121 - chr2R 8406132 intron CG2121 - chr2R 8406183 intron CG2121 - chr2R_6_8405001 chr2R_8405001 RAL-381 630 chr2R 8488917 8488943 chr2R 8489002 8489013 5 82 10.5 14.5 12.5 0.4 96 chr2R 8488917 intron mtt - chr2R 8488965 intron mtt - chr2R 8489013 intron mtt - chr2R_5_8485001 chr2R_8485001 RAL-381 631 chr2R 8615781 8615793 chr2R 8615894 8615906 4 113 4.5 10.0 7.2 0.5 125 chr2R 8615781 intron Cirl + chr2R 8615844 intron Cirl + chr2R 8615906 5` UTR Cirl + chr2R_4_8615001 chr2R_8615001 RAL-381 632 chr2R 8714709 8714715 chr2R 8714796 8714802 4 87 0.0 7.0 3.5 0.9 93 chr2R 8714709 3` UTR PGRP-SC1b + chr2R 8714756 3` UTR PGRP-SC1b + chr2R 8714802 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-381 633 chr2R 8722770 8722794 chr2R 8723011 8723035 pogo 9 241 2.5 7.5 5.0 1.5 265 chr2R 8722770 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-381 634 chr2R 8777911 8777937 chr2R 8784102 8784141 diver 4 6198 1.0 1.5 1.2 1.8 6230 chr2R 8777911 intergenic not near genes chr2R 8781026 intergenic not near genes chr2R 8784141 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-381 635 chr2R 8786536 8786566 chr2R 8786651 8786651 6 110 13.0 12.0 12.5 0.4 115 chr2R 8786536 intergenic not near genes chr2R 8786594 intergenic not near genes chr2R 8786651 intergenic not near genes chr2R_6_8785001 chr2R_8785001 RAL-381 636 chr2R 8789470 8789491 chr2R 8789559 8789573 4 82 10.5 13.0 11.8 0.3 103 chr2R 8789470 intergenic not near genes chr2R 8789522 intergenic not near genes chr2R 8789573 intergenic not near genes chr2R_4_8785001 chr2R_8785001 RAL-381 637 chr2R 8951174 8951197 chr2R 8951351 8951374 10 177 11.0 7.0 9.0 1.0 200 chr2R 8951174 intergenic CG33199 -,CG8229 -,Tom7 + chr2R 8951274 intergenic CG33199 -,CG8229 -,Tom7 + chr2R 8951374 intergenic Tom7 +,CG33199 -,CG8229 - chr2R_10_8950001 chr2R_8950001 RAL-381 638 chr2R 9047425 9047436 chr2R 9047520 9047522 4 93 1.0 3.0 2.0 1.3 97 chr2R 9047425 intron CG13743 - chr2R 9047474 intron CG13743 - chr2R 9047522 intron CG13743 - chr2R_4_9045001 chr2R_9045001 RAL-381 639 chr2R 9076141 9076166 chr2R 9076217 9076242 5 76 4.0 6.5 5.2 0.8 101 chr2R 9076141 intron ana + chr2R 9076192 intron ana + chr2R 9076242 intron ana + chr2R_5_9075001 chr2R_9075001 RAL-381 640 chr2R 9110158 9110164 chr2R 9110247 9110253 4 89 2.5 1.0 1.8 1.4 95 chr2R 9110158 intergenic Pmm45A - chr2R 9110206 intergenic Pmm45A - chr2R 9110253 intergenic not near genes chr2R_4_9110001 chr2R_9110001 RAL-381 641 chr2R 9151311 9151330 chr2R 9157781 9157800 Burdock 10 6470 3.0 4.0 3.5 2.2 6489 chr2R 9151311 3` UTR CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157800 intergenic CG8008 - chr2R_10_9150001 chr2R_9150001 RAL-381 642 chr2R 9212693 9212723 chr2R 9213177 9213209 roo 13 484 3.0 4.0 3.5 2.9 516 chr2R 9212693 intergenic CR45309 + chr2R 9212951 intergenic CR45309 + chr2R 9213209 5` UTR CR45309 + chr2R_13_9210001 chr2R_9210001 RAL-381 643 chr2R 9352252 9352258 chr2R 9361397 9361408 roo 4 9149 2.0 5.5 3.8 0.8 9156 chr2R 9352252 intron CG13954 - chr2R 9356830 intron CG13954 - chr2R 9361408 intron CG13954 - chr2R_4_9355001 chr2R_9355001 RAL-381 644 chr2R 9368140 9368155 chr2R 9368202 9368221 4 67 7.0 5.5 6.2 0.6 81 chr2R 9368140 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368221 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-381 645 chr2R 9561828 9561846 chr2R 9561916 9561934 5 87 8.5 7.5 8.0 0.6 106 chr2R 9561828 3` UTR,intron CR45281 -,CG1809 + chr2R 9561881 3` UTR,intron CR45281 -,CG1809 + chr2R 9561934 3` UTR,intron CR45281 -,CG1809 + chr2R_5_9560001 chr2R_9560001 RAL-381 646 chr2R 9653260 9653289 chr2R 9653344 9653373 10 84 8.0 9.5 8.8 1.0 113 chr2R 9653260 intron Mmp2 - chr2R 9653316 intron Mmp2 - chr2R 9653373 intron Mmp2 - chr2R_10_9650001 chr2R_9650001 RAL-381 647 chr2R 9669141 9669168 chr2R 9669242 9669269 6 101 18.0 16.5 17.2 0.3 128 chr2R 9669141 intron Mmp2 - chr2R 9669205 intron Mmp2 - chr2R 9669269 intron Mmp2 - chr2R_6_9665001 chr2R_9665001 RAL-381 648 chr2R 9715745 9715756 chr2R 9722717 9722728 4 6972 18.0 25.0 21.5 0.2 6983 chr2R 9715745 3` UTR dap + chr2R 9719236 intron sqa - chr2R 9722728 intron sqa - chr2R_4_9715001 chr2R_9715001 RAL-381 649 chr2R 9726610 9726634 chr2R 9734161 9734185 17.6 5 7551 1.5 0.5 1.0 2.5 7575 chr2R 9726610 intron sqa - chr2R 9730398 intron sqa - chr2R 9734185 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-381 650 chr2R 9746549 9746583 chr2R 9747882 9747916 13 1335 23.0 33.0 28.0 0.4 1367 chr2R 9746549 5` UTR sqa - chr2R 9747232 5` UTR sqa - chr2R 9747916 5` UTR sqa - chr2R_13_9745001 chr2R_9745001 RAL-381 651 chr2R 9790081 9790107 chr2R 9790152 9790184 5 72 13.5 11.5 12.5 0.4 103 chr2R 9790081 intron,5` UTR CG1688 -,CR44208 + chr2R 9790132 intron,5` UTR CG1688 -,CR44208 + chr2R 9790184 intron,5` UTR CG1688 -,CR44208 + chr2R_5_9790001 chr2R_9790001 RAL-381 652 chr2R 9871042 9871071 chr2R 9871528 9871557 roo 8 485 5.0 5.0 5.0 1.3 515 chr2R 9871042 intron cbx - chr2R 9871300 intron cbx - chr2R 9871557 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-381 653 chr2R 9935038 9935059 chr2R 9935120 9935141 5 82 4.5 7.5 6.0 0.7 103 chr2R 9935038 intron Mef2 - chr2R 9935090 intron Mef2 - chr2R 9935141 intron Mef2 - chr2R_5_9935001 chr2R_9935001 RAL-381 654 chr2R 10005858 10005882 chr2R 10007012 10007034 1360 16 1158 7.0 3.5 5.2 2.6 1176 chr2R 10005858 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007034 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-381 655 chr2R 10129682 10129714 chr2R 10130082 10130114 6 398 10.0 6.5 8.2 0.7 432 chr2R 10129682 intron gem + chr2R 10129898 intron gem + chr2R 10130114 intron gem + chr2R_6_10125001 chr2R_10125001 RAL-381 656 chr2R 10167111 10167139 chr2R 10167186 10167215 5 76 18.0 19.5 18.8 0.3 104 chr2R 10167111 intron KCNQ - chr2R 10167163 intron KCNQ - chr2R 10167215 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-381 657 chr2R 10168356 10168362 chr2R 10168433 10168439 4 77 5.0 4.0 4.5 0.7 83 chr2R 10168356 intron KCNQ - chr2R 10168398 intron KCNQ - chr2R 10168439 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-381 658 chr2R 10171113 10171145 chr2R 10171197 10171229 5 84 4.5 6.0 5.2 0.8 116 chr2R 10171113 intron KCNQ - chr2R 10171171 intron KCNQ - chr2R 10171229 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-381 659 chr2R 10176125 10176152 chr2R 10176204 10176231 10 77 14.0 15.5 14.8 0.6 106 chr2R 10176125 intron KCNQ - chr2R 10176178 intron KCNQ - chr2R 10176231 intron KCNQ - chr2R_10_10175001 chr2R_10175001 RAL-381 660 chr2R 10176879 10176912 chr2R 10186046 10186079 roo 5 9166 2.0 0.0 1.0 2.5 9200 chr2R 10176879 intron KCNQ - chr2R 10181479 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-381 661 chr2R 10190448 10190465 chr2R 10190532 10190548 4 81 8.0 8.5 8.2 0.4 100 chr2R 10190448 intron KCNQ - chr2R 10190498 intron KCNQ - chr2R 10190548 intron KCNQ - chr2R_4_10190001 chr2R_10190001 RAL-381 662 chr2R 10216199 10216219 chr2R 10216277 10216297 7 78 3.0 6.5 4.8 1.2 98 chr2R 10216199 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216297 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-381 663 chr2R 10253366 10253379 chr2R 10253472 10253492 6 109 5.5 4.0 4.8 1.0 126 chr2R 10253366 exon CG12913 + chr2R 10253429 exon CG12913 + chr2R 10253492 exon CG12913 + chr2R_6_10250001 chr2R_10250001 RAL-381 664 chr2R 10300653 10300679 chr2R 10300749 10300775 8 96 2.5 1.0 1.8 2.9 122 chr2R 10300653 intron CAP + chr2R 10300714 intron CAP + chr2R 10300775 intron CAP + chr2R_8_10300001 chr2R_10300001 RAL-381 665 chr2R 10303531 10303543 chr2R 10303631 10303643 6 100 2.5 3.0 2.8 1.6 112 chr2R 10303531 intron CAP + chr2R 10303587 intron CAP + chr2R 10303643 intron CAP + chr2R_6_10300001 chr2R_10300001 RAL-381 666 chr2R 10303544 10303562 chr2R 10303628 10303661 10 98 1.0 3.0 2.0 3.3 117 chr2R 10303544 intron CAP + chr2R 10303602 intron CAP + chr2R 10303661 intron CAP + chr2R_10_10300001 chr2R_10300001 RAL-381 667 chr2R 10313314 10313354 chr2R 10313402 10313442 7 88 0.5 0.5 0.5 4.7 128 chr2R 10313314 intergenic not near genes chr2R 10313378 intergenic not near genes chr2R 10313442 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-381 668 chr2R 10318515 10318542 chr2R 10318601 10318628 12 86 1.5 3.0 2.2 3.8 113 chr2R 10318515 intron Ndg + chr2R 10318572 intron Ndg + chr2R 10318628 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-381 669 chr2R 10319719 10319745 chr2R 10319810 10319837 19 91 4.5 3.0 3.8 4.0 118 chr2R 10319719 intron Ndg + chr2R 10319778 intron Ndg + chr2R 10319837 intron Ndg + chr2R_19_10315001 chr2R_10315001 RAL-381 670 chr2R 10352682 10352704 chr2R 10352751 10352781 7 75 1.5 2.5 2.0 2.3 99 chr2R 10352682 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352732 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352781 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-381 671 chr2R 10387980 10388003 chr2R 10388077 10388100 8 97 0.0 4.5 2.2 2.5 120 chr2R 10387980 intron CG42732 - chr2R 10388040 intron CG42732 - chr2R 10388100 intron CG42732 - chr2R_8_10385001 chr2R_10385001 RAL-381 672 chr2R 10429018 10429041 chr2R 10429095 10429118 7 76 7.5 3.0 5.2 1.1 100 chr2R 10429018 intergenic not near genes chr2R 10429068 intergenic not near genes chr2R 10429118 intergenic not near genes chr2R_7_10425001 chr2R_10425001 RAL-381 673 chr2R 10454095 10454129 chr2R 10454172 10454205 19 77 3.5 3.5 3.5 4.2 110 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_19_10450001 chr2R_10450001 RAL-381 674 chr2R 10469020 10469056 chr2R 10469146 10469182 18 125 2.5 5.0 3.8 3.8 162 chr2R 10469020 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-381 675 chr2R 10562991 10563010 chr2R 10563061 10563088 4 76 0.0 0.0 0.0 4.0 97 chr2R 10562991 intron psq + chr2R 10563040 intron psq + chr2R 10563088 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-381 676 chr2R 10574628 10574647 chr2R 10574708 10574729 4 82 4.0 2.0 3.0 1.0 101 chr2R 10574628 intron psq + chr2R 10574678 intron psq + chr2R 10574729 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-381 677 chr2R 10585579 10585584 chr2R 10594162 10594162 Tirant 7 8582 3.0 7.5 5.2 1.1 8583 chr2R 10585579 intron psq + chr2R 10589870 intron psq + chr2R 10594162 intron psq + chr2R_7_10585001 chr2R_10585001 RAL-381 678 chr2R 10585586 10585591 chr2R 10594155 10594155 Tirant 4 8575 2.0 6.5 4.2 0.8 8569 chr2R 10585586 intron psq + chr2R 10589870 intron psq + chr2R 10594155 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-381 679 chr2R 10622350 10622380 chr2R 10637115 10637145 mdg1 7 14765 2.5 1.5 2.0 2.3 14795 chr2R 10622350 intron CG11883 + chr2R 10629748 intron CG11883 + chr2R 10637145 intron CG11883 + chr2R_7_10625001 chr2R_10625001 RAL-381 680 chr2R 10770997 10771021 chr2R 10771078 10771102 5 81 7.0 8.5 7.8 0.6 105 chr2R 10770997 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771102 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-381 681 chr2R 10796724 10796736 chr2R 10796818 10796835 4 96 11.0 10.0 10.5 0.3 111 chr2R 10796724 intron CG33144 - chr2R 10796780 intron CG33144 - chr2R 10796835 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-381 682 chr2R 10919116 10919125 chr2R 10919197 10919207 5 82 8.0 13.0 10.5 0.4 91 chr2R 10919116 intergenic not near genes chr2R 10919162 intergenic not near genes chr2R 10919207 intergenic not near genes chr2R_5_10915001 chr2R_10915001 RAL-381 683 chr2R 10947093 10947096 chr2R 10947180 10947183 4 87 7.0 0.0 3.5 0.9 90 chr2R 10947093 5` UTR CR45228 + chr2R 10947138 intergenic CR45228 + chr2R 10947183 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-381 684 chr2R 10948024 10948060 chr2R 10955575 10955610 17.6 11 7548 2.5 6.0 4.2 2.1 7586 chr2R 10948024 intergenic not near genes chr2R 10951817 intergenic not near genes chr2R 10955610 intergenic not near genes chr2R_11_10950001 chr2R_10950001 RAL-381 685 chr2R 10965140 10965173 chr2R 10965223 10965256 18 80 2.0 2.5 2.2 5.6 116 chr2R 10965140 intergenic not near genes chr2R 10965198 intergenic not near genes chr2R 10965256 intergenic not near genes chr2R_18_10965001 chr2R_10965001 RAL-381 686 chr2R 10976362 10976380 chr2R 10976445 10976463 6 83 1.5 3.0 2.2 1.9 101 chr2R 10976362 intergenic not near genes chr2R 10976412 intergenic not near genes chr2R 10976463 intergenic not near genes chr2R_6_10975001 chr2R_10975001 RAL-381 687 chr2R 10989477 10989483 chr2R 10989552 10989562 6 76 1.0 9.5 5.2 1.0 85 chr2R 10989477 intron luna - chr2R 10989520 intron luna - chr2R 10989562 intron luna - chr2R_6_10985001 chr2R_10985001 RAL-381 688 chr2R 11009813 11009839 chr2R 11018987 11019001 roo 8 9170 3.0 4.5 3.8 1.7 9188 chr2R 11009813 intron luna - chr2R 11014407 intron luna - chr2R 11019001 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-381 689 chr2R 11019879 11019904 chr2R 11024942 11024969 jockey 10 5062 3.0 2.5 2.8 2.6 5090 chr2R 11019879 intron luna - chr2R 11022424 intron luna - chr2R 11024969 intron luna - chr2R_10_11020001 chr2R_11020001 RAL-381 690 chr2R 11050567 11050599 chr2R 11054372 11054404 17 3806 28.0 19.0 23.5 0.7 3837 chr2R 11050567 intron luna - chr2R 11052486 intron luna - chr2R 11054404 intron luna - chr2R_17_11050001 chr2R_11050001 RAL-381 691 chr2R 11066462 11066470 chr2R 11066540 11066548 6 78 0.0 7.5 3.8 1.2 86 chr2R 11066462 intron luna - chr2R 11066505 intron luna - chr2R 11066548 intron luna - chr2R_6_11065001 chr2R_11065001 RAL-381 692 chr2R 11207815 11207843 chr2R 11208007 11208035 BS 10 192 8.0 2.0 5.0 1.7 220 chr2R 11207815 intron shn + chr2R 11207925 intron shn + chr2R 11208035 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-381 693 chr2R 11344145 11344181 chr2R 11344241 11344273 6 95 0.0 3.0 1.5 2.4 128 chr2R 11344145 intergenic alphaTry - chr2R 11344209 intergenic alphaTry - chr2R 11344273 3` UTR alphaTry - chr2R_6_11340001 chr2R_11340001 RAL-381 694 chr2R 11471132 11471142 chr2R 11471210 11471230 5 84 6.5 7.0 6.8 0.6 98 chr2R 11471132 intergenic not near genes chr2R 11471181 intergenic not near genes chr2R 11471230 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-381 695 chr2R 11471143 11471153 chr2R 11471209 11471241 6 82 4.0 6.5 5.2 1.0 98 chr2R 11471143 intergenic not near genes chr2R 11471192 intergenic not near genes chr2R 11471241 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-381 696 chr2R 11472657 11472680 chr2R 11473854 11473875 pogo 10 1195 2.0 5.0 3.5 2.2 1218 chr2R 11472657 intergenic not near genes chr2R 11473266 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-381 697 chr2R 11494597 11494634 chr2R 11494686 11494723 15 87 3.0 4.5 3.8 3.1 126 chr2R 11494597 intron inv + chr2R 11494660 intron inv + chr2R 11494723 intron inv + chr2R_15_11490001 chr2R_11490001 RAL-381 698 chr2R 11530320 11530351 chr2R 11530409 11530440 13 89 2.5 2.5 2.5 3.7 120 chr2R 11530320 intergenic not near genes chr2R 11530380 intergenic not near genes chr2R 11530440 intergenic not near genes chr2R_13_11530001 chr2R_11530001 RAL-381 699 chr2R 11614630 11614797 chr2R 11614710 11614885 4 85 2.5 1.0 1.8 1.4 255 chr2R 11614630 intron tou - chr2R 11614758 intron tou - chr2R 11614885 intron tou - chr2R_4_11610001 chr2R_11610001 RAL-381 700 chr2R 11677873 11677897 chr2R 11677951 11677975 5 75 4.0 4.0 4.0 1.0 102 chr2R 11677873 intron,exon Roc2 -,Tret1-2 + chr2R 11677924 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-381 701 chr2R 11959866 11959900 chr2R 11959947 11959981 9 80 3.0 4.0 3.5 2.0 115 chr2R 11959866 intron CG13188 + chr2R 11959924 intron CG13188 + chr2R 11959981 intron CG13188 + chr2R_9_11955001 chr2R_11955001 RAL-381 702 chr2R 8518779 8518802 chr2R 12066178 12066196 9 3547395 9.0 13.0 11.0 0.8 3547417 chr2R 8518779 intron mtt - chr2R 10292488 intron CAP + chr2R 12066196 intron CG8888 - chr2R_9_10290001 chr2R_10290001 RAL-381 703 chr2R 12093950 12093974 chr2R 12094063 12094085 6 113 4.0 1.0 2.5 1.7 135 chr2R 12093950 intron jeb - chr2R 12094018 intron jeb - chr2R 12094085 intron jeb - chr2R_6_12090001 chr2R_12090001 RAL-381 704 chr2R 12115747 12115864 chr2R 12115829 12115940 23 80 1.0 1.5 1.2 10.5 193 chr2R 12115747 intron jeb - chr2R 12115844 intron jeb - chr2R 12115940 intron jeb - chr2R_23_12115001 chr2R_12115001 RAL-381 705 chr2R 12124847 12124858 chr2R 12124912 12124942 5 80 4.5 2.5 3.5 1.1 95 chr2R 12124847 intergenic not near genes chr2R 12124894 intergenic not near genes chr2R 12124942 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-381 706 chr2R 12186003 12186037 chr2R 12186098 12186123 4 88 0.5 3.5 2.0 1.3 120 chr2R 12186003 intron Cyp6g1 + chr2R 12186063 intron Cyp6g1 + chr2R 12186123 intron Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-381 707 chr2R 12187471 12187499 chr2R 12190087 12190124 37 2620 99.5 91.0 95.2 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_37_12185001 chr2R_12185001 RAL-381 708 chr2R 12217579 12217599 chr2R 12217660 12217679 9 81 3.0 5.0 4.0 1.8 100 chr2R 12217579 intergenic not near genes chr2R 12217629 intergenic not near genes chr2R 12217679 intergenic not near genes chr2R_9_12215001 chr2R_12215001 RAL-381 709 chr2R 12481155 12481161 chr2R 12482952 12482965 roo 4 1802 2.0 8.0 5.0 0.7 1810 chr2R 12481155 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482965 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-381 710 chr2R 12492092 12492119 chr2R 12492187 12492222 10 101 4.0 1.0 2.5 2.9 130 chr2R 12492092 intron fdl - chr2R 12492157 intron fdl - chr2R 12492222 intron fdl - chr2R_10_12490001 chr2R_12490001 RAL-381 711 chr2R 12501703 12501713 chr2R 12503853 12503870 Rt1c 4 2156 8.5 6.0 7.2 0.5 2167 chr2R 12501703 intron fdl - chr2R 12502786 intron fdl - chr2R 12503870 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-381 712 chr2R 12501714 12501719 chr2R 12503850 12503881 Rt1c 6 2150 8.5 5.5 7.0 0.8 2167 chr2R 12501714 intron fdl - chr2R 12502798 intron fdl - chr2R 12503881 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-381 713 chr2R 12602820 12602831 chr2R 12602904 12602915 4 84 0.0 5.0 2.5 1.1 95 chr2R 12602820 intron Amph + chr2R 12602868 intron Amph + chr2R 12602915 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-381 714 chr2R 12789298 12789328 chr2R 12797659 12797676 roo 12 8357 2.5 1.0 1.8 4.3 8378 chr2R 12789298 intron,3` UTR sca +,CR45137 - chr2R 12793487 intron,intron sca +,CR45137 - chr2R 12797676 intron,3` UTR sca +,CR45137 - chr2R_12_12790001 chr2R_12790001 RAL-381 715 chr2R 12844709 12844727 chr2R 12844800 12844818 7 91 3.5 1.5 2.5 2.0 109 chr2R 12844709 intergenic Or49b + chr2R 12844764 intergenic Or49b + chr2R 12844818 intergenic Or49b + chr2R_7_12840001 chr2R_12840001 RAL-381 716 chr2R 12897459 12897479 chr2R 12897550 12897570 10 91 1.5 0.5 1.0 5.0 111 chr2R 12897459 intron vg + chr2R 12897514 intron vg + chr2R 12897570 intron vg + chr2R_10_12895001 chr2R_12895001 RAL-381 717 chr2R 13052207 13052236 chr2R 13052504 13052532 12 297 4.0 2.0 3.0 3.0 325 chr2R 13052207 intergenic not near genes chr2R 13052370 intergenic not near genes chr2R 13052532 intergenic not near genes chr2R_12_13050001 chr2R_13050001 RAL-381 718 chr2R 13136839 13136869 chr2R 13141637 13141667 Doc 11 4797 7.0 5.0 6.0 1.6 4828 chr2R 13136839 exon Cap-G + chr2R 13139253 intron Cap-G + chr2R 13141667 intron Cap-G + chr2R_11_13135001 chr2R_13135001 RAL-381 719 chr2R 13162778 13162799 chr2R 13162862 13162883 7 84 1.5 0.0 0.8 3.9 105 chr2R 13162778 3` UTR Nrk + chr2R 13162830 3` UTR Nrk + chr2R 13162883 3` UTR Nrk + chr2R_7_13160001 chr2R_13160001 RAL-381 720 chr2R 13431489 13431517 chr2R 13431568 13431596 4 79 4.5 3.0 3.8 0.8 107 chr2R 13431489 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431596 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-381 721 chr2R 13431839 13431870 chr2R 13431946 13431977 6 107 5.5 1.5 3.5 1.3 138 chr2R 13431839 intron CG42321 - chr2R 13431908 intron CG42321 - chr2R 13431977 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-381 722 chr2R 13439109 13439226 chr2R 13439224 13439302 5 121 3.5 4.0 3.8 1.0 193 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439206 intergenic cnn -,CG42321 - chr2R 13439302 intergenic cnn -,CG42321 - chr2R_5_13435001 chr2R_13435001 RAL-381 723 chr2R 13532518 13532543 chr2R 13532634 13532659 6 116 2.5 3.5 3.0 1.5 141 chr2R 13532518 intron Vmat - chr2R 13532588 intron Vmat - chr2R 13532659 intron Vmat - chr2R_6_13530001 chr2R_13530001 RAL-381 724 chr2R 13566266 13566283 chr2R 13566346 13566363 4 80 9.5 8.0 8.8 0.4 97 chr2R 13566266 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566363 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-381 725 chr2R 13580506 13580529 chr2R 13580848 13580879 jockey 6 348 0.5 8.5 4.5 1.1 373 chr2R 13580506 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-381 726 chr2R 13620483 13620518 chr2R 13624823 13624858 6 4340 42.0 29.5 35.8 0.2 4375 chr2R 13620483 intergenic not near genes chr2R 13622670 intergenic fas + chr2R 13624858 intron fas + chr2R_6_13620001 chr2R_13620001 RAL-381 727 chr2R 13690676 13690706 chr2R 13690956 13690976 4 271 13.5 9.0 11.2 0.3 300 chr2R 13690676 intron fas + chr2R 13690826 intron fas + chr2R 13690976 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-381 728 chr2R 13692317 13692352 chr2R 13692401 13692436 16 84 2.5 5.0 3.8 3.3 119 chr2R 13692317 intron,intron fas +,CG6220 - chr2R 13692376 intron,intron fas +,CG6220 - chr2R 13692436 intron,intron fas +,CG6220 - chr2R_16_13690001 chr2R_13690001 RAL-381 729 chr2R 13721211 13721218 chr2R 13721294 13721300 5 82 14.0 14.5 14.2 0.3 89 chr2R 13721211 intron fas + chr2R 13721256 intron fas + chr2R 13721300 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-381 730 chr2R 13728137 13728163 chr2R 13735794 13735820 opus 4 7657 1.5 0.5 1.0 2.0 7683 chr2R 13728137 intron fas + chr2R 13731978 intron fas + chr2R 13735820 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-381 731 chr2R 13768979 13769005 chr2R 13769078 13769104 9 99 7.0 6.0 6.5 1.2 125 chr2R 13768979 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-381 732 chr2R 13868894 13868915 chr2R 13868973 13868992 7 78 3.0 1.5 2.2 2.2 98 chr2R 13868894 intron shot - chr2R 13868943 intron shot - chr2R 13868992 intron shot - chr2R_7_13865001 chr2R_13865001 RAL-381 733 chr2R 14012982 14013010 chr2R 14013068 14013096 8 86 3.0 6.5 4.8 1.4 114 chr2R 14012982 intron mam + chr2R 14013039 intron mam + chr2R 14013096 intron mam + chr2R_8_14010001 chr2R_14010001 RAL-381 734 chr2R 14093431 14093456 chr2R 14109583 14109585 4 16146 1.0 0.5 0.8 2.2 16154 chr2R 14093431 intron Prosap - chr2R 14101508 intron Prosap - chr2R 14109585 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-381 735 chr2R 14140080 14140106 chr2R 14140152 14140184 9 77 3.0 4.5 3.8 1.9 104 chr2R 14140080 5` UTR Prosap - chr2R 14140132 5` UTR Prosap - chr2R 14140184 5` UTR Prosap - chr2R_9_14140001 chr2R_14140001 RAL-381 736 chr2R 14393864 14393895 chr2R 14393949 14393980 9 84 6.5 3.0 4.8 1.6 116 chr2R 14393864 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-381 737 chr2R 14400349 14400378 chr2R 14400447 14400469 5 97 4.5 1.5 3.0 1.2 120 chr2R 14400349 intergenic not near genes chr2R 14400409 intergenic not near genes chr2R 14400469 intergenic not near genes chr2R_5_14400001 chr2R_14400001 RAL-381 738 chr2R 14467306 14467324 chr2R 14476463 14476482 roo 10 9158 3.5 7.0 5.2 1.6 9176 chr2R 14467306 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-381 739 chr2R 14493731 14493762 chr2R 14493822 14493853 13 91 5.5 5.0 5.2 2.1 122 chr2R 14493731 intron L + chr2R 14493792 intron L + chr2R 14493853 intron L + chr2R_13_14490001 chr2R_14490001 RAL-381 740 chr2R 14563480 14563504 chr2R 14563559 14563582 8 77 7.0 0.5 3.8 1.7 102 chr2R 14563480 intron ttv + chr2R 14563531 intron ttv + chr2R 14563582 intron ttv + chr2R_8_14560001 chr2R_14560001 RAL-381 741 chr2R 14565558 14565576 chr2R 14565635 14565653 4 77 7.0 3.0 5.0 0.7 95 chr2R 14565558 intron ttv + chr2R 14565606 intron ttv + chr2R 14565653 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-381 742 chr2R 14634283 14634308 chr2R 14634370 14634396 16 87 6.0 5.0 5.5 2.5 113 chr2R 14634283 intergenic not near genes chr2R 14634340 intergenic not near genes chr2R 14634396 intergenic not near genes chr2R_16_14630001 chr2R_14630001 RAL-381 743 chr2R 14707135 14707152 chr2R 14707778 14707795 7 643 3.0 1.5 2.2 2.2 660 chr2R 14707135 intron mspo - chr2R 14707465 intron mspo - chr2R 14707795 intron mspo - chr2R_7_14705001 chr2R_14705001 RAL-381 744 chr2R 14786030 14786062 chr2R 14786120 14786155 8 93 0.0 2.0 1.0 4.0 125 chr2R 14786030 intron kn - chr2R 14786092 intron kn - chr2R 14786155 intron kn - chr2R_8_14785001 chr2R_14785001 RAL-381 745 chr2R 14850067 14850085 chr2R 14850164 14850170 5 100 29.5 27.0 28.2 0.2 103 chr2R 14850067 exon SMC2 - chr2R 14850118 intron SMC2 - chr2R 14850170 exon SMC2 - chr2R_5_14850001 chr2R_14850001 RAL-381 746 chr2R 14855040 14855065 chr2R 14855128 14855157 8 91 1.0 3.0 2.0 2.7 117 chr2R 14855040 5` UTR Ciao1 - chr2R 14855098 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_8_14855001 chr2R_14855001 RAL-381 747 chr2R 14873690 14873721 chr2R 14875208 14875239 5 1518 6.0 14.5 10.2 0.4 1549 chr2R 14873690 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874464 exon Cyp6a17 + chr2R 14875239 exon Cyp6a17 + chr2R_5_14870001 chr2R_14870001 RAL-381 748 chr2R 14911702 14911727 chr2R 14911824 14911850 13 123 2.5 1.0 1.8 4.6 148 chr2R 14911702 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911850 intron CG10249 - chr2R_13_14910001 chr2R_14910001 RAL-381 749 chr2R 14917246 14917270 chr2R 14917336 14917359 8 90 4.5 3.5 4.0 1.6 113 chr2R 14917246 intron CG10249 - chr2R 14917302 intron CG10249 - chr2R 14917359 intron CG10249 - chr2R_8_14915001 chr2R_14915001 RAL-381 750 chr2R 14955669 14955696 chr2R 14955758 14955785 4 89 3.5 2.5 3.0 1.0 116 chr2R 14955669 intron aPKC - chr2R 14955727 intron aPKC - chr2R 14955785 intron aPKC - chr2R_4_14955001 chr2R_14955001 RAL-381 751 chr2R 15004728 15004760 chr2R 15005057 15005089 jockey 10 329 1.5 6.5 4.0 2.0 361 chr2R 15004728 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_10_15000001 chr2R_15000001 RAL-381 752 chr2R 15015464 15015490 chr2R 15022888 15022914 mdg1 8 7423 2.5 0.5 1.5 3.2 7450 chr2R 15015464 intron hbs + chr2R 15019189 intron hbs + chr2R 15022914 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-381 753 chr2R 15051086 15051108 chr2R 15051168 15051190 5 82 1.5 6.0 3.8 1.0 104 chr2R 15051086 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051190 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-381 754 chr2R 15119332 15119340 chr2R 15127813 15127818 Tirant 4 8480 7.0 6.0 6.5 0.5 8486 chr2R 15119332 intron chn + chr2R 15123575 intron chn + chr2R 15127818 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-381 755 chr2R 15137972 15137999 chr2R 15138052 15138081 7 78 3.0 0.0 1.5 2.8 109 chr2R 15137972 intron chn + chr2R 15138026 intron chn + chr2R 15138081 intron chn + chr2R_7_15135001 chr2R_15135001 RAL-381 756 chr2R 15247844 15247867 chr2R 15248008 15248031 4 164 11.5 8.0 9.8 0.4 187 chr2R 15247844 intergenic not near genes chr2R 15247938 intergenic not near genes chr2R 15248031 intergenic not near genes chr2R_4_15245001 chr2R_15245001 RAL-381 757 chr2R 15294677 15294702 chr2R 15294759 15294784 14 80 14.5 17.5 16.0 0.8 107 chr2R 15294677 intron,3` UTR Trpm -,CR44241 - chr2R 15294730 intron,3` UTR Trpm -,CR44241 - chr2R 15294784 intron,3` UTR Trpm -,CR44241 - chr2R_14_15290001 chr2R_15290001 RAL-381 758 chr2R 15330208 15330241 chr2R 15330342 15330375 5 134 1.0 3.5 2.2 1.6 167 chr2R 15330208 intergenic CR44371 - chr2R 15330292 intergenic CR44371 - chr2R 15330375 intergenic CR44371 - chr2R_5_15330001 chr2R_15330001 RAL-381 759 chr2R 15375075 15375078 chr2R 15375185 15375188 4 110 3.0 2.0 2.5 1.1 113 chr2R 15375075 intergenic not near genes chr2R 15375132 intergenic not near genes chr2R 15375188 intergenic not near genes chr2R_4_15375001 chr2R_15375001 RAL-381 760 chr2R 15534679 15534696 chr2R 15534758 15534775 5 79 3.0 1.5 2.2 1.6 96 chr2R 15534679 intron CG30471 + chr2R 15534727 intron CG30471 + chr2R 15534775 intron CG30471 + chr2R_5_15530001 chr2R_15530001 RAL-381 761 chr2R 15700257 15700277 chr2R 15700352 15700372 10 95 4.0 7.0 5.5 1.5 115 chr2R 15700257 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700372 intron,5` UTR CG30080 -,CG42662 - chr2R_10_15700001 chr2R_15700001 RAL-381 762 chr2R 15783789 15783825 chr2R 15783891 15783927 11 99 2.0 4.5 3.2 2.6 138 chr2R 15783789 intron Zasp52 - chr2R 15783858 intron Zasp52 - chr2R 15783927 intron Zasp52 - chr2R_11_15780001 chr2R_15780001 RAL-381 763 chr2R 15786515 15786540 chr2R 15786672 15786697 17 157 5.5 4.5 5.0 2.8 182 chr2R 15786515 intron Zasp52 - chr2R 15786606 intron Zasp52 - chr2R 15786697 intron Zasp52 - chr2R_17_15785001 chr2R_15785001 RAL-381 764 chr2R 15887192 15887220 chr2R 15887297 15887321 8 105 0.5 2.5 1.5 3.2 129 chr2R 15887192 intron sli - chr2R 15887256 intron sli - chr2R 15887321 intron sli - chr2R_8_15885001 chr2R_15885001 RAL-381 765 chr2R 16054953 16054960 chr2R 16055035 16055041 4 82 4.5 10.0 7.2 0.5 88 chr2R 16054953 intron CG8405 + chr2R 16054997 intron CG8405 + chr2R 16055041 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-381 766 chr2R 16120067 16120100 chr2R 16120152 16120184 16 83 5.5 5.5 5.5 2.5 117 chr2R 16120067 intron Jhe + chr2R 16120126 intron Jhe + chr2R 16120184 intron Jhe + chr2R_16_16120001 chr2R_16120001 RAL-381 767 chr2R 16302688 16302698 chr2R 16302771 16302787 6 87 4.0 4.0 4.0 1.2 99 chr2R 16302688 3` UTR CR45232 - chr2R 16302738 3` UTR CR45232 - chr2R 16302787 3` UTR CR45232 - chr2R_6_16300001 chr2R_16300001 RAL-381 768 chr2R 16307887 16307902 chr2R 16307964 16307979 4 77 2.0 3.0 2.5 1.1 92 chr2R 16307887 5` UTR Nox + chr2R 16307933 5` UTR Nox + chr2R 16307979 5` UTR Nox + chr2R_4_16305001 chr2R_16305001 RAL-381 769 chr2R 16406725 16406749 chr2R 16406803 16406827 9 78 3.5 4.0 3.8 1.9 102 chr2R 16406725 intron Sema-2b + chr2R 16406776 intron Sema-2b + chr2R 16406827 intron Sema-2b + chr2R_9_16405001 chr2R_16405001 RAL-381 770 chr2R 16571872 16571904 chr2R 16571967 16571999 10 95 3.5 1.5 2.5 2.9 127 chr2R 16571872 intergenic CG4927 + chr2R 16571936 intergenic CG4927 + chr2R 16571999 intergenic CG4927 + chr2R_10_16570001 chr2R_16570001 RAL-381 771 chr2R 16689153 16689176 chr2R 16689481 16689505 13 326 3.5 3.5 3.5 2.9 352 chr2R 16689153 intron CG30463 - chr2R 16689329 intron CG30463 - chr2R 16689505 intron CG30463 - chr2R_13_16685001 chr2R_16685001 RAL-381 772 chr2R 16737141 16737147 chr2R 16737241 16737247 5 100 8.5 7.0 7.8 0.6 106 chr2R 16737141 3` UTR CG43104 - chr2R 16737194 3` UTR CG43104 - chr2R 16737247 exon CG43104 - chr2R_5_16735001 chr2R_16735001 RAL-381 773 chr2R 16737149 16737158 chr2R 16737238 16737258 6 95 5.5 7.0 6.2 0.8 109 chr2R 16737149 3` UTR CG43104 - chr2R 16737204 3` UTR CG43104 - chr2R 16737258 exon CG43104 - chr2R_6_16735001 chr2R_16735001 RAL-381 774 chr2R 16740892 16740922 chr2R 16740986 16741001 4 90 2.0 5.0 3.5 0.9 109 chr2R 16740892 intergenic not near genes chr2R 16740946 intergenic not near genes chr2R 16741001 intergenic not near genes chr2R_4_16740001 chr2R_16740001 RAL-381 775 chr2R 16775642 16775665 chr2R 16775906 16775929 5 264 5.0 2.5 3.8 1.0 287 chr2R 16775642 3` UTR Arp53D + chr2R 16775786 intergenic Arp53D + chr2R 16775929 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-381 776 chr2R 16972440 16972460 chr2R 16972537 16972556 8 96 0.5 1.0 0.8 4.4 116 chr2R 16972440 intergenic not near genes chr2R 16972498 intergenic not near genes chr2R 16972556 intergenic not near genes chr2R_8_16970001 chr2R_16970001 RAL-381 777 chr2R 17048636 17048650 chr2R 17048715 17048729 4 79 1.5 0.5 1.0 2.0 93 chr2R 17048636 3` UTR CG9642 + chr2R 17048682 3` UTR CG9642 + chr2R 17048729 3` UTR CG9642 + chr2R_4_17045001 chr2R_17045001 RAL-381 778 chr2R 17147239 17147277 chr2R 17152270 17152289 jockey 14 5027 3.5 2.5 3.0 3.5 5050 chr2R 17147239 intergenic not near genes chr2R 17149764 intergenic not near genes chr2R 17152289 intergenic not near genes chr2R_14_17145001 chr2R_17145001 RAL-381 779 chr2R 17176374 17176385 chr2R 17182548 17182574 diver 6 6187 1.0 1.0 1.0 3.0 6200 chr2R 17176374 intergenic not near genes chr2R 17179474 intergenic not near genes chr2R 17182574 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-381 780 chr2R 17226436 17226467 chr2R 17226780 17226810 11 343 3.0 4.5 3.8 2.3 374 chr2R 17226436 intron mbl + chr2R 17226623 intron mbl + chr2R 17226810 intron mbl + chr2R_11_17225001 chr2R_17225001 RAL-381 781 chr2R 17236509 17236542 chr2R 17241711 17241738 copia 16 5203 2.0 3.0 2.5 4.6 5229 chr2R 17236509 intron mbl + chr2R 17239124 intron mbl + chr2R 17241738 intron mbl + chr2R_16_17235001 chr2R_17235001 RAL-381 782 chr2R 17389282 17389299 chr2R 17389365 17389379 6 86 4.5 4.5 4.5 1.1 97 chr2R 17389282 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389379 intergenic CR44344 - chr2R_6_17385001 chr2R_17385001 RAL-381 783 chr2R 17459009 17459035 chr2R 17459094 17459120 7 85 3.5 2.5 3.0 1.8 111 chr2R 17459009 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459120 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-381 784 chr2R 17470328 17470336 chr2R 17470408 17470416 4 80 3.0 1.0 2.0 1.3 88 chr2R 17470328 intron qkr54B + chr2R 17470372 intron qkr54B + chr2R 17470416 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-381 785 chr2R 17485917 17485937 chr2R 17490679 17490699 F-element 5 4762 1.0 0.0 0.5 3.3 4782 chr2R 17485917 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488308 intron NT5E-2 + chr2R 17490699 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-381 786 chr2R 17519231 17519261 chr2R 17519307 17519331 12 76 2.5 3.0 2.8 3.2 100 chr2R 17519231 3` UTR Patronin - chr2R 17519281 3` UTR Patronin - chr2R 17519331 3` UTR Patronin - chr2R_12_17515001 chr2R_17515001 RAL-381 787 chr2R 17556443 17556461 chr2R 17556525 17556546 6 84 1.0 5.0 3.0 1.5 103 chr2R 17556443 intergenic MESR4 + chr2R 17556494 intergenic MESR4 + chr2R 17556546 intergenic MESR4 +,Klp54D + chr2R_6_17555001 chr2R_17555001 RAL-381 788 chr2R 17645085 17645107 chr2R 17645631 17645644 9 545 1.5 0.0 0.8 5.0 559 chr2R 17645085 intergenic not near genes chr2R 17645364 intergenic not near genes chr2R 17645644 intergenic not near genes chr2R_9_17645001 chr2R_17645001 RAL-381 789 chr2R 17708396 17708417 chr2R 17708476 17708498 4 81 1.0 0.5 0.8 2.2 102 chr2R 17708396 intron CG6424 - chr2R 17708447 intron CG6424 - chr2R 17708498 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-381 790 chr2R 17784024 17784057 chr2R 17784265 17784298 pogo 18 238 4.5 6.5 5.5 2.8 274 chr2R 17784024 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_18_17780001 chr2R_17780001 RAL-381 791 chr2R 17785091 17785096 chr2R 17785179 17785184 4 88 2.0 7.0 4.5 0.7 93 chr2R 17785091 intergenic not near genes chr2R 17785138 intergenic not near genes chr2R 17785184 intergenic not near genes chr2R_4_17785001 chr2R_17785001 RAL-381 792 chr2R 17835048 17835063 chr2R 17835124 17835157 5 88 1.5 2.0 1.8 1.8 109 chr2R 17835048 intron grh + chr2R 17835102 intron grh + chr2R 17835157 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-381 793 chr2R 17872913 17872938 chr2R 17873271 17873296 11 358 5.5 3.5 4.5 2.0 383 chr2R 17872913 intergenic not near genes chr2R 17873104 intergenic not near genes chr2R 17873296 intergenic not near genes chr2R_11_17870001 chr2R_17870001 RAL-381 794 chr2R 17982928 17982945 chr2R 17983013 17983030 9 85 3.5 6.0 4.8 1.6 102 chr2R 17982928 intron dpr13 - chr2R 17982979 intron dpr13 - chr2R 17983030 intron dpr13 - chr2R_9_17980001 chr2R_17980001 RAL-381 795 chr2R 17998812 17998834 chr2R 17998954 17998981 8 143 3.0 1.5 2.2 2.5 169 chr2R 17998812 intron dpr13 - chr2R 17998896 intron dpr13 - chr2R 17998981 intron dpr13 - chr2R_8_17995001 chr2R_17995001 RAL-381 796 chr2R 18013953 18013983 chr2R 18014028 18014059 11 74 1.5 2.0 1.8 3.9 106 chr2R 18013953 intergenic not near genes chr2R 18014006 intergenic not near genes chr2R 18014059 intergenic not near genes chr2R_11_18010001 chr2R_18010001 RAL-381 797 chr2R 18021486 18021550 chr2R 18021979 18022037 5 489 22.0 16.5 19.2 0.2 551 chr2R 18021486 exon CG10910 + chr2R 18021762 exon CG10910 + chr2R 18022037 exon CG10910 + chr2R_5_18020001 chr2R_18020001 RAL-381 798 chr2R 18076033 18076061 chr2R 18076136 18076165 12 101 6.0 6.0 6.0 1.7 132 chr2R 18076033 intron CG34386 + chr2R 18076099 intron CG34386 + chr2R 18076165 intron CG34386 + chr2R_12_18075001 chr2R_18075001 RAL-381 799 chr2R 18171495 18171524 chr2R 18171634 18171653 15 138 4.5 3.5 4.0 3.0 158 chr2R 18171495 intron Dgp-1 - chr2R 18171574 intron Dgp-1 - chr2R 18171653 intron Dgp-1 - chr2R_15_18170001 chr2R_18170001 RAL-381 800 chr2R 18187668 18187681 chr2R 18187882 18187895 4 214 4.0 9.0 6.5 0.5 227 chr2R 18187668 intron CG33958 - chr2R 18187782 intron,exon CG33958 -,CG14499 + chr2R 18187895 intron,exon CG33958 -,CG14499 + chr2R_4_18185001 chr2R_18185001 RAL-381 801 chr2R 18265623 18265652 chr2R 18265717 18265747 13 94 1.5 4.5 3.0 3.2 124 chr2R 18265623 intergenic not near genes chr2R 18265685 intergenic not near genes chr2R 18265747 intergenic not near genes chr2R_13_18265001 chr2R_18265001 RAL-381 802 chr2R 18289446 18289460 chr2R 18289548 18289562 5 102 2.5 3.0 2.8 1.3 116 chr2R 18289446 intron,intron sbb -,CG14502 + chr2R 18289504 intron,intron sbb -,CG14502 + chr2R 18289562 exon,intron sbb -,CG14502 + chr2R_5_18285001 chr2R_18285001 RAL-381 803 chr2R 18312827 18312862 chr2R 18312923 18312932 5 84 2.0 0.0 1.0 2.5 105 chr2R 18312827 intron sbb - chr2R 18312880 intron sbb - chr2R 18312932 intron sbb - chr2R_5_18310001 chr2R_18310001 RAL-381 804 chr2R 18358387 18358422 chr2R 18372599 18372634 roo 12 14211 2.5 3.0 2.8 3.2 14247 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_12_18365001 chr2R_18365001 RAL-381 805 chr2R 18407228 18407258 chr2R 18407313 18407342 13 83 5.5 7.5 6.5 1.7 114 chr2R 18407228 exon GstE7 + chr2R 18407285 exon GstE7 + chr2R 18407342 exon GstE7 + chr2R_13_18405001 chr2R_18405001 RAL-381 806 chr2R 18487848 18487852 chr2R 18495317 18495322 blood 4 7470 0.0 10.0 5.0 0.7 7474 chr2R 18487848 intron CG30116 - chr2R 18491585 intron CG30116 - chr2R 18495322 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-381 807 chr2R 18528192 18528222 chr2R 18528277 18528288 8 79 2.0 2.0 2.0 2.7 96 chr2R 18528192 intron CG10924 + chr2R 18528240 intron CG10924 + chr2R 18528288 intron CG10924 + chr2R_8_18525001 chr2R_18525001 RAL-381 808 chr2R 18575813 18575831 chr2R 18581983 18582019 3S18 7 6182 1.5 4.5 3.0 1.8 6206 chr2R 18575813 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-381 809 chr2R 18590880 18590901 chr2R 18600032 18600053 roo 10 9149 4.5 8.5 6.5 1.3 9173 chr2R 18590880 intron GEFmeso - chr2R 18595466 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-381 810 chr2R 18608634 18608647 chr2R 18608710 18608723 6 76 6.0 8.5 7.2 0.7 89 chr2R 18608634 intron GEFmeso - chr2R 18608678 intron GEFmeso - chr2R 18608723 intron GEFmeso - chr2R_6_18605001 chr2R_18605001 RAL-381 811 chr2R 18689298 18689303 chr2R 18689880 18689885 4 582 3.0 3.5 3.2 1.0 587 chr2R 18689298 intron Sik3 + chr2R 18689592 intron Sik3 + chr2R 18689885 intron Sik3 + chr2R_4_18685001 chr2R_18685001 RAL-381 812 chr2R 18698591 18698608 chr2R 18698668 18698685 5 77 2.0 6.0 4.0 1.0 94 chr2R 18698591 intron Sik3 + chr2R 18698638 intron Sik3 + chr2R 18698685 intron Sik3 + chr2R_5_18695001 chr2R_18695001 RAL-381 813 chr2R 18713238 18713267 chr2R 18713314 18713344 16 77 5.0 3.0 4.0 3.2 106 chr2R 18713238 intergenic not near genes chr2R 18713291 intergenic not near genes chr2R 18713344 intergenic not near genes chr2R_16_18710001 chr2R_18710001 RAL-381 814 chr2R 18808064 18808074 chr2R 18808153 18808163 5 89 0.0 1.0 0.5 3.3 99 chr2R 18808064 intergenic CG15096 - chr2R 18808114 intergenic CG15096 - chr2R 18808163 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-381 815 chr2R 18862307 18862318 chr2R 18862394 18862405 8 87 1.5 0.0 0.8 4.4 98 chr2R 18862307 intergenic Jheh3 - chr2R 18862356 intergenic Jheh3 - chr2R 18862405 intergenic Jheh3 -,CG43069 + chr2R_8_18860001 chr2R_18860001 RAL-381 816 chr2R 18892353 18892383 chr2R 18892547 18892577 9 194 4.0 1.0 2.5 2.6 224 chr2R 18892353 intron sano + chr2R 18892465 intron sano + chr2R 18892577 intron sano + chr2R_9_18890001 chr2R_18890001 RAL-381 817 chr2R 18953157 18953189 chr2R 18953244 18953276 11 87 1.5 1.0 1.2 5.0 119 chr2R 18953157 intron sano + chr2R 18953216 intron sano + chr2R 18953276 intron sano + chr2R_11_18950001 chr2R_18950001 RAL-381 818 chr2R 18964930 18964951 chr2R 18965006 18965022 8 75 1.5 4.5 3.0 2.0 92 chr2R 18964930 intergenic not near genes chr2R 18964976 intergenic not near genes chr2R 18965022 intergenic not near genes chr2R_8_18960001 chr2R_18960001 RAL-381 819 chr2R 18989030 18989046 chr2R 18989107 18989124 4 78 1.5 1.0 1.2 1.8 94 chr2R 18989030 intron tn + chr2R 18989077 intron tn + chr2R 18989124 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-381 820 chr2R 18992016 18992048 chr2R 18992157 18992189 19 140 3.0 4.0 3.5 4.2 173 chr2R 18992016 intron tn + chr2R 18992102 intron tn + chr2R 18992189 intron tn + chr2R_19_18990001 chr2R_18990001 RAL-381 821 chr2R 19010743 19010773 chr2R 19010860 19010890 9 110 4.0 5.5 4.8 1.6 147 chr2R 19010743 intergenic not near genes chr2R 19010816 intergenic not near genes chr2R 19010890 intergenic not near genes chr2R_9_19010001 chr2R_19010001 RAL-381 822 chr2R 19012936 19012968 chr2R 19013030 19013062 9 93 4.5 4.5 4.5 1.6 126 chr2R 19012936 intergenic not near genes chr2R 19012999 intergenic not near genes chr2R 19013062 intergenic not near genes chr2R_9_19010001 chr2R_19010001 RAL-381 823 chr2R 19331237 19331257 chr2R 19331317 19331331 10 79 9.5 8.0 8.8 1.0 94 chr2R 19331237 intron,intron Rgk1 -,CG34045 + chr2R 19331284 intron,intron Rgk1 -,CG34045 + chr2R 19331331 intron,intron Rgk1 -,CG34045 + chr2R_10_19330001 chr2R_19330001 RAL-381 824 chr2R 19331258 19331266 chr2R 19331314 19331330 4 64 4.0 8.0 6.0 0.6 72 chr2R 19331258 intron,intron Rgk1 -,CG34045 + chr2R 19331294 intron,intron Rgk1 -,CG34045 + chr2R 19331330 intron,intron Rgk1 -,CG34045 + chr2R_4_19330001 chr2R_19330001 RAL-381 825 chr2R 19363191 19363194 chr2R 19363267 19363270 4 76 0.0 0.0 0.0 4.0 79 chr2R 19363191 intergenic CG10051 + chr2R 19363230 intergenic CG10051 + chr2R 19363270 intergenic CG10051 + chr2R_4_19360001 chr2R_19360001 RAL-381 826 chr2R 19373685 19373713 chr2R 19373866 19373894 18 180 11.0 9.0 10.0 1.6 209 chr2R 19373685 5` UTR CG9416 - chr2R 19373790 intergenic CG9416 - chr2R 19373894 intergenic CG9416 - chr2R_18_19370001 chr2R_19370001 RAL-381 827 chr2R 19536467 19536493 chr2R 19536548 19536575 6 78 2.0 2.0 2.0 2.0 108 chr2R 19536467 intron sm - chr2R 19536521 intron sm - chr2R 19536575 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-381 828 chr2R 19555580 19555608 chr2R 19555664 19555690 14 82 3.5 5.0 4.2 2.7 110 chr2R 19555580 intron sm - chr2R 19555635 intron sm - chr2R 19555690 intron sm - chr2R_14_19555001 chr2R_19555001 RAL-381 829 chr2R 19776601 19776629 chr2R 19779924 19779952 jockey 10 3323 2.0 4.0 3.0 2.5 3351 chr2R 19776601 intergenic not near genes chr2R 19778276 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-381 830 chr2R 19914844 19914875 chr2R 19922256 19922287 mdg1 7 7408 3.0 2.5 2.8 1.8 7443 chr2R 19914844 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922287 intergenic not near genes chr2R_7_19915001 chr2R_19915001 RAL-381 831 chr2R 19926025 19926039 chr2R 19926108 19926122 6 83 3.5 10.5 7.0 0.8 97 chr2R 19926025 intergenic CR44626 - chr2R 19926074 intergenic CR44626 - chr2R 19926122 intergenic CR44626 - chr2R_6_19925001 chr2R_19925001 RAL-381 832 chr2R 19957434 19957457 chr2R 19962636 19962659 copia 9 5199 2.5 3.5 3.0 2.2 5225 chr2R 19957434 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962659 intergenic not near genes chr2R_9_19960001 chr2R_19960001 RAL-381 833 chr2R 19976402 19976435 chr2R 19976806 19976841 13 405 4.5 5.0 4.8 2.2 439 chr2R 19976402 intergenic not near genes chr2R 19976622 intergenic not near genes chr2R 19976841 intergenic not near genes chr2R_13_19975001 chr2R_19975001 RAL-381 834 chr2R 20009495 20009528 chr2R 20009574 20009607 13 76 4.5 5.0 4.8 2.2 112 chr2R 20009495 intergenic not near genes chr2R 20009551 intergenic not near genes chr2R 20009607 intergenic not near genes chr2R_13_20005001 chr2R_20005001 RAL-381 835 chr2R 20046732 20046748 chr2R 20048790 20048817 7 2069 3.0 2.5 2.8 1.8 2085 chr2R 20046732 intergenic not near genes chr2R 20047774 intergenic not near genes chr2R 20048817 intergenic not near genes chr2R_7_20045001 chr2R_20045001 RAL-381 836 chr2R 20080603 20080610 chr2R 20080680 20080687 4 77 0.0 7.5 3.8 0.8 84 chr2R 20080603 intergenic not near genes chr2R 20080645 intergenic not near genes chr2R 20080687 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-381 837 chr2R 20101861 20101892 chr2R 20101943 20101968 13 77 5.0 2.5 3.8 2.7 107 chr2R 20101861 intergenic not near genes chr2R 20101914 intergenic not near genes chr2R 20101968 intergenic not near genes chr2R_13_20100001 chr2R_20100001 RAL-381 838 chr2R 20523099 20523128 chr2R 20523176 20523205 15 77 3.0 4.5 3.8 3.1 106 chr2R 20523099 intergenic not near genes chr2R 20523152 intergenic not near genes chr2R 20523205 intergenic not near genes chr2R_15_20520001 chr2R_20520001 RAL-381 839 chr2R 20739443 20739471 chr2R 20744211 20744239 F-element 12 4766 2.0 9.5 5.8 1.8 4796 chr2R 20739443 intron dpr + chr2R 20741841 intron dpr + chr2R 20744239 intron dpr + chr2R_12_20740001 chr2R_20740001 RAL-381 840 chr2R 20783323 20783333 chr2R 20788095 20788105 F-element 4 4772 2.5 10.0 6.2 0.6 4782 chr2R 20783323 intergenic not near genes chr2R 20785714 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-381 841 chr2R 20834806 20834830 chr2R 20834921 20834945 16 115 4.0 4.0 4.0 3.2 139 chr2R 20834806 intron,intron insc -,sktl - chr2R 20834876 intron,intron insc -,sktl - chr2R 20834945 intron,intron insc -,sktl - chr2R_16_20830001 chr2R_20830001 RAL-381 842 chr2R 20938102 20938111 chr2R 20938178 20938187 4 76 0.5 1.0 0.8 2.2 85 chr2R 20938102 intergenic not near genes chr2R 20938144 intergenic not near genes chr2R 20938187 intergenic not near genes chr2R_4_20935001 chr2R_20935001 RAL-381 843 chr2R 20962907 20962938 chr2R 20963004 20963036 9 97 0.5 2.0 1.2 4.1 129 chr2R 20962907 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963036 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-381 844 chr2R 21043654 21043684 chr2R 21043738 21043791 8 101 4.5 0.0 2.2 2.5 137 chr2R 21043654 intergenic not near genes chr2R 21043722 intergenic not near genes chr2R 21043791 intergenic not near genes chr2R_8_21040001 chr2R_21040001 RAL-381 845 chr2R 21075681 21075710 chr2R 21075768 21075797 12 86 4.0 1.5 2.8 3.2 116 chr2R 21075681 intron Treh + chr2R 21075739 intron Treh + chr2R 21075797 intron Treh + chr2R_12_21075001 chr2R_21075001 RAL-381 846 chr2R 21088376 21088391 chr2R 21088455 21088469 6 79 1.5 6.5 4.0 1.2 93 chr2R 21088376 3` UTR Treh + chr2R 21088422 3` UTR,3` UTR Treh +,Rbpn-5 - chr2R 21088469 3` UTR,3` UTR Treh +,Rbpn-5 - chr2R_6_21085001 chr2R_21085001 RAL-381 847 chr2R 21134175 21134213 chr2R 21134253 21134291 15 69 2.5 2.5 2.5 4.3 116 chr2R 21134175 intron Magi - chr2R 21134233 intron Magi - chr2R 21134291 intron Magi - chr2R_15_21130001 chr2R_21130001 RAL-381 848 chr2R 21151133 21151137 chr2R 21153766 21153770 opus 4 2633 0.5 0.5 0.5 2.7 2637 chr2R 21151133 intron CG30389 - chr2R 21152452 intron CG30389 - chr2R 21153770 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-381 849 chr2R 21188221 21188243 chr2R 21188299 21188316 4 78 3.0 1.0 2.0 1.3 95 chr2R 21188221 exon tud + chr2R 21188268 intron tud + chr2R 21188316 intron tud + chr2R_4_21185001 chr2R_21185001 RAL-381 850 chr2R 21344796 21344824 chr2R 21344961 21344989 8 164 1.5 4.0 2.8 2.1 193 chr2R 21344796 intron CG15666 + chr2R 21344892 exon CG15666 + chr2R 21344989 intron CG15666 + chr2R_8_21340001 chr2R_21340001 RAL-381 851 chr2R 21546786 21546815 chr2R 21546867 21546896 10 77 4.5 2.5 3.5 2.2 110 chr2R 21546786 intron Egfr + chr2R 21546841 intron Egfr + chr2R 21546896 intron Egfr + chr2R_10_21545001 chr2R_21545001 RAL-381 852 chr2R 21648725 21648750 chr2R 21648939 21648972 12 219 4.0 6.0 5.0 2.0 247 chr2R 21648725 intron CG10082 + chr2R 21648848 intron CG10082 + chr2R 21648972 intron CG10082 + chr2R_12_21645001 chr2R_21645001 RAL-381 853 chr2R 21700154 21700186 chr2R 21700240 21700246 11 83 2.0 4.5 3.2 2.6 92 chr2R 21700154 intron HmgZ - chr2R 21700200 intron HmgZ - chr2R 21700246 intron HmgZ - chr2R_11_21700001 chr2R_21700001 RAL-381 854 chr2R 21738278 21738311 chr2R 21747437 21747439 roo 10 9152 4.0 2.5 3.2 2.4 9161 chr2R 21738278 intergenic not near genes chr2R 21742858 intergenic not near genes chr2R 21747439 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-381 855 chr2R 21753085 21753117 chr2R 21753570 21753602 roo 17 485 7.0 4.5 5.8 2.5 517 chr2R 21753085 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_17_21750001 chr2R_21750001 RAL-381 856 chr2R 21759431 21759444 chr2R 21765326 21765339 5 5895 30.0 28.0 29.0 0.2 5908 chr2R 21759431 intergenic not near genes chr2R 21762385 intergenic not near genes chr2R 21765339 intergenic CR43984 -,CG30395 + chr2R_5_21760001 chr2R_21760001 RAL-381 857 chr2R 21772223 21772251 chr2R 21772304 21772332 13 81 4.5 2.0 3.2 3.1 109 chr2R 21772223 intergenic not near genes chr2R 21772278 intergenic not near genes chr2R 21772332 intergenic not near genes chr2R_13_21770001 chr2R_21770001 RAL-381 858 chr2R 21778762 21778786 chr2R 21778838 21778862 11 75 4.0 5.0 4.5 2.0 100 chr2R 21778762 intergenic not near genes chr2R 21778812 intergenic not near genes chr2R 21778862 intergenic not near genes chr2R_11_21775001 chr2R_21775001 RAL-381 859 chr2R 21795100 21795127 chr2R 21795205 21795232 10 105 2.5 2.5 2.5 2.9 132 chr2R 21795100 intergenic not near genes chr2R 21795166 intergenic not near genes chr2R 21795232 intergenic not near genes chr2R_10_21795001 chr2R_21795001 RAL-381 860 chr2R 21832424 21832453 chr2R 21832830 21832834 9 403 4.0 3.5 3.8 1.9 410 chr2R 21832424 intergenic CG34040 - chr2R 21832629 exon CG34040 - chr2R 21832834 exon CG34040 - chr2R_9_21830001 chr2R_21830001 RAL-381 861 chr2R 21908667 21908693 chr2R 21908752 21908777 10 84 3.0 3.0 3.0 2.5 110 chr2R 21908667 intron Fili + chr2R 21908722 intron Fili + chr2R 21908777 intron Fili + chr2R_10_21905001 chr2R_21905001 RAL-381 862 chr2R 21985541 21985562 chr2R 21985622 21985643 10 80 4.5 3.0 3.8 2.1 102 chr2R 21985541 intergenic CG30401 - chr2R 21985592 intergenic CG30401 - chr2R 21985643 3` UTR CG30401 - chr2R_10_21985001 chr2R_21985001 RAL-381 863 chr2R 22003087 22003118 chr2R 22003173 22003199 14 83 5.0 2.0 3.5 3.1 112 chr2R 22003087 intron CG34370 - chr2R 22003143 intron CG34370 - chr2R 22003199 intron CG34370 - chr2R_14_22000001 chr2R_22000001 RAL-381 864 chr2R 22014211 22014217 chr2R 22014287 22014288 5 75 5.0 6.0 5.5 0.8 77 chr2R 22014211 intron CG34370 - chr2R 22014250 intron CG34370 - chr2R 22014288 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-381 865 chr2R 22014218 22014232 chr2R 22014273 22014308 10 72 2.0 2.0 2.0 3.3 90 chr2R 22014218 intron CG34370 - chr2R 22014263 intron CG34370 - chr2R 22014308 intron CG34370 - chr2R_10_22010001 chr2R_22010001 RAL-381 866 chr2R 22040159 22040169 chr2R 22040240 22040248 5 80 6.0 1.5 3.8 1.0 89 chr2R 22040159 intergenic not near genes chr2R 22040204 intergenic not near genes chr2R 22040248 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-381 867 chr2R 22040170 22040186 chr2R 22040238 22040257 4 73 3.5 1.5 2.5 1.1 87 chr2R 22040170 intergenic not near genes chr2R 22040214 intergenic not near genes chr2R 22040257 intergenic not near genes chr2R_4_22040001 chr2R_22040001 RAL-381 868 chr2R 22072681 22072714 chr2R 22072766 22072799 12 83 2.5 4.0 3.2 2.9 118 chr2R 22072681 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072799 exon CG11474 - chr2R_12_22070001 chr2R_22070001 RAL-381 869 chr2R 22161726 22161745 chr2R 22161867 22161886 4 141 0.5 5.0 2.8 1.1 160 chr2R 22161726 intron a + chr2R 22161806 intron a + chr2R 22161886 intron a + chr2R_4_22160001 chr2R_22160001 RAL-381 870 chr2R 22185679 22185708 chr2R 22185778 22185807 6 99 3.0 0.0 1.5 2.4 128 chr2R 22185679 3` UTR MED16 + chr2R 22185743 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-381 871 chr2R 22290093 22290105 chr2R 22290177 22290189 7 84 0.5 2.5 1.5 2.8 96 chr2R 22290093 intergenic not near genes chr2R 22290141 intergenic not near genes chr2R 22290189 intergenic not near genes chr2R_7_22290001 chr2R_22290001 RAL-381 872 chr2R 22292070 22292106 chr2R 22292157 22292193 10 87 3.0 5.5 4.2 1.9 123 chr2R 22292070 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292193 5` UTR CR43422 + chr2R_10_22290001 chr2R_22290001 RAL-381 873 chr2R 22349707 22349720 chr2R 22351490 22351504 jockey 7 1783 6.5 7.5 7.0 0.9 1797 chr2R 22349707 intron Liprin-gamma - chr2R 22350606 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-381 874 chr2R 22360383 22360404 chr2R 22360816 22360828 jockey 5 431 5.0 4.5 4.8 0.9 445 chr2R 22360383 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-381 875 chr2R 22370774 22370783 chr2R 22370851 22370859 4 77 0.5 1.5 1.0 2.0 85 chr2R 22370774 intron Liprin-gamma - chr2R 22370816 intron Liprin-gamma - chr2R 22370859 intron Liprin-gamma - chr2R_4_22370001 chr2R_22370001 RAL-381 876 chr2R 22377805 22377832 chr2R 22377891 22377901 13 82 5.0 1.5 3.2 3.1 96 chr2R 22377805 3` UTR Rtf1 + chr2R 22377853 3` UTR Rtf1 + chr2R 22377901 3` UTR Rtf1 + chr2R_13_22375001 chr2R_22375001 RAL-381 877 chr2R 22420649 22420679 chr2R 22420734 22420764 4 85 1.0 0.5 0.8 2.2 115 chr2R 22420649 intergenic mRpS29 -,rad50 + chr2R 22420706 intergenic rad50 +,mRpS29 - chr2R 22420764 intergenic rad50 +,mRpS29 - chr2R_4_22420001 chr2R_22420001 RAL-381 878 chr2R 22427040 22427062 chr2R 22427133 22427159 9 94 9.0 4.0 6.5 1.2 119 chr2R 22427040 intergenic CG10344 -,ppk12 + chr2R 22427100 intergenic CG10344 -,ppk12 + chr2R 22427159 intergenic CG10344 -,ppk12 + chr2R_9_22425001 chr2R_22425001 RAL-381 879 chr2R 22465317 22465344 chr2R 22465516 22465543 BS 7 199 4.0 1.0 2.5 2.0 226 chr2R 22465317 intron CG10384 + chr2R 22465430 intron CG10384 + chr2R 22465543 intron CG10384 + chr2R_7_22465001 chr2R_22465001 RAL-381 880 chr2R 22525748 22525783 chr2R 22529302 22529338 jockey 15 3554 2.5 4.0 3.2 3.6 3590 chr2R 22525748 intron px - chr2R 22527543 intron px - chr2R 22529338 intron px - chr2R_15_22525001 chr2R_22525001 RAL-381 881 chr2R 22545625 22545641 chr2R 22545704 22545720 4 79 2.5 3.0 2.8 1.1 95 chr2R 22545625 intron px - chr2R 22545672 intron px - chr2R 22545720 intron px - chr2R_4_22545001 chr2R_22545001 RAL-381 882 chr2R 22574178 22574188 chr2R 22574258 22574268 4 80 1.5 5.5 3.5 0.9 90 chr2R 22574178 intron dnr1 - chr2R 22574223 intron dnr1 - chr2R 22574268 intron dnr1 - chr2R_4_22570001 chr2R_22570001 RAL-381 883 chr2R 22623451 22623483 chr2R 22623591 22623617 18 139 4.5 2.0 3.2 4.3 166 chr2R 22623451 intron CG33143 + chr2R 22623534 intron CG33143 + chr2R 22623617 intron CG33143 + chr2R_18_22620001 chr2R_22620001 RAL-381 884 chr2R 22725639 22725666 chr2R 22725794 22725821 8 154 7.5 4.5 6.0 1.1 182 chr2R 22725639 intron jbug - chr2R 22725730 intron jbug - chr2R 22725821 intron jbug - chr2R_8_22725001 chr2R_22725001 RAL-381 885 chr2R 22774960 22775002 chr2R 22775379 22775419 jockey 18 418 3.5 4.0 3.8 3.8 459 chr2R 22774960 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_18_22775001 chr2R_22775001 RAL-381 886 chr2R 22911549 22911566 chr2R 22911817 22911817 5 264 5.0 23.5 14.2 0.3 268 chr2R 22911549 exon nahoda + chr2R 22911683 exon nahoda + chr2R 22911817 exon nahoda + chr2R_5_22910001 chr2R_22910001 RAL-381 887 chr2R 22951832 22951850 chr2R 22951918 22951936 4 86 4.0 1.5 2.8 1.1 104 chr2R 22951832 3` UTR CR32835 - chr2R 22951884 3` UTR CR32835 - chr2R 22951936 intron CR32835 - chr2R_4_22950001 chr2R_22950001 RAL-381 888 chr2R 23000143 23000169 chr2R 23000223 23000249 9 79 2.5 0.5 1.5 3.6 106 chr2R 23000143 intron twi + chr2R 23000196 intron twi + chr2R 23000249 intron twi + chr2R_9_23000001 chr2R_23000001 RAL-381 889 chr2R 23052653 23052684 chr2R 23052729 23052760 7 76 5.0 2.5 3.8 1.5 107 chr2R 23052653 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-381 890 chr2R 23061749 23061761 chr2R 23061866 23061878 4 117 2.5 6.5 4.5 0.7 129 chr2R 23061749 3` UTR l(2)06496 - chr2R 23061814 3` UTR l(2)06496 - chr2R 23061878 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-381 891 chr2R 23149478 23149491 chr2R 23149605 23149618 4 126 4.5 13.5 9.0 0.4 140 chr2R 23149478 intergenic not near genes chr2R 23149548 intergenic not near genes chr2R 23149618 intergenic not near genes chr2R_4_23145001 chr2R_23145001 RAL-381 892 chr2R 23155716 23155753 chr2R 23155803 23155840 10 87 2.0 3.0 2.5 2.9 124 chr2R 23155716 intron CG9899 + chr2R 23155778 intron CG9899 + chr2R 23155840 intron CG9899 + chr2R_10_23155001 chr2R_23155001 RAL-381 893 chr2R 23190020 23190044 chr2R 23190100 23190124 6 78 3.5 0.5 2.0 2.0 104 chr2R 23190020 intron CG34371 - chr2R 23190072 intron CG34371 - chr2R 23190124 intron CG34371 - chr2R_6_23190001 chr2R_23190001 RAL-381 894 chr2R 23191752 23191777 chr2R 23192385 23192409 8 633 2.0 2.5 2.2 2.5 657 chr2R 23191752 intron CG34371 - chr2R 23192080 intron CG34371 - chr2R 23192409 intron CG34371 - chr2R_8_23190001 chr2R_23190001 RAL-381 895 chr2R 23315390 23315395 chr2R 23315561 23315567 4 172 1.0 4.5 2.8 1.1 177 chr2R 23315390 intergenic not near genes chr2R 23315478 intergenic not near genes chr2R 23315567 intergenic not near genes chr2R_4_23315001 chr2R_23315001 RAL-381 896 chr2R 23349609 23349641 chr2R 23349875 23349886 6 260 5.0 3.5 4.2 1.2 277 chr2R 23349609 intergenic not near genes chr2R 23349748 intergenic not near genes chr2R 23349886 intergenic not near genes chr2R_6_23345001 chr2R_23345001 RAL-381 897 chr2R 23356282 23356307 chr2R 23356362 23356383 10 86 3.5 3.5 3.5 2.2 101 chr2R 23356282 3` UTR Rpi + chr2R 23356332 3` UTR Rpi + chr2R 23356383 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-381 898 chr2R 23402608 23402642 chr2R 23407684 23407719 flea 5 5076 0.5 2.0 1.2 2.3 5111 chr2R 23402608 intergenic CG3520 - chr2R 23405164 intergenic not near genes chr2R 23407719 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-381 899 chr2R 23422645 23422677 chr2R 23422724 23422757 15 78 4.5 7.5 6.0 2.1 112 chr2R 23422645 intron CG9815 - chr2R 23422701 intron CG9815 - chr2R 23422757 intron CG9815 - chr2R_15_23420001 chr2R_23420001 RAL-381 900 chr2R 23429217 23429244 chr2R 23429436 23429469 10 221 5.0 2.5 3.8 2.1 252 chr2R 23429217 intron CG9815 - chr2R 23429343 intron CG9815 - chr2R 23429469 intron CG9815 - chr2R_10_23425001 chr2R_23425001 RAL-381 901 chr2R 23450842 23450859 chr2R 23450920 23450942 4 82 2.5 4.0 3.2 1.0 100 chr2R 23450842 intron CG43795 + chr2R 23450892 intron CG43795 + chr2R 23450942 intron CG43795 + chr2R_4_23450001 chr2R_23450001 RAL-381 902 chr2R 23529572 23529606 chr2R 23537148 23537165 412 8 7568 4.0 6.5 5.2 1.3 7593 chr2R 23529572 intron bw - chr2R 23533368 intron bw - chr2R 23537165 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-381 903 chr2R 23607035 23607189 chr2R 23607116 23607282 11 86 1.5 4.0 2.8 2.9 247 chr2R 23607035 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607282 intron CG17664 - chr2R_11_23605001 chr2R_23605001 RAL-381 904 chr2R 23674182 23674191 chr2R 23674262 23674271 6 80 7.0 8.5 7.8 0.7 89 chr2R 23674182 intron Pde8 + chr2R 23674226 intron Pde8 + chr2R 23674271 intron Pde8 + chr2R_6_23670001 chr2R_23670001 RAL-381 905 chr2R 23758329 23758358 chr2R 23758404 23758434 10 74 2.5 7.0 4.8 1.7 105 chr2R 23758329 intron CG9850 - chr2R 23758382 intron CG9850 - chr2R 23758434 intron CG9850 - chr2R_10_23755001 chr2R_23755001 RAL-381 906 chr2R 23914300 23914315 chr2R 23921924 23921939 412 7 7622 6.5 8.5 7.5 0.8 7639 chr2R 23914300 exon kcc + chr2R 23918120 intron kcc + chr2R 23921939 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-381 907 chr2R 24147068 24147098 chr2R 24154645 24154676 412 5 7577 3.5 5.0 4.2 1.0 7608 chr2R 24147068 intron Dat + chr2R 24150872 intron Dat + chr2R 24154676 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-381 908 chr2R 24177236 24177265 chr2R 24184720 24184750 412 10 7484 3.5 0.5 2.0 3.3 7514 chr2R 24177236 3` UTR Nop60B + chr2R 24180993 intron Nop60B + chr2R 24184750 3` UTR Nop60B + chr2R_10_24180001 chr2R_24180001 RAL-381 909 chr2R 24228398 24228430 chr2R 24228474 24228475 4 70 1.5 3.5 2.5 1.1 77 chr2R 24228398 intron CG30419 - chr2R 24228436 intron CG30419 - chr2R 24228475 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-381 910 chr2R 24278324 24278362 chr2R 24278405 24278440 12 81 0.5 6.5 3.5 2.7 116 chr2R 24278324 intron nvy + chr2R 24278382 intron nvy + chr2R 24278440 intron nvy + chr2R_12_24275001 chr2R_24275001 RAL-381 911 chr2R 24287135 24287164 chr2R 24287212 24287241 9 77 2.0 6.5 4.2 1.7 106 chr2R 24287135 intron nvy + chr2R 24287188 intron nvy + chr2R 24287241 intron nvy + chr2R_9_24285001 chr2R_24285001 RAL-381 912 chr2R 24292508 24292544 chr2R 24292593 24292629 8 82 4.5 1.0 2.8 2.1 121 chr2R 24292508 intergenic not near genes chr2R 24292568 intergenic not near genes chr2R 24292629 intergenic not near genes chr2R_8_24290001 chr2R_24290001 RAL-381 913 chr2R 24351415 24351440 chr2R 24351494 24351513 7 77 3.0 3.5 3.2 1.7 98 chr2R 24351415 intron bs + chr2R 24351464 intron bs + chr2R 24351513 intron,3` UTR bs +,CR44811 - chr2R_7_24350001 chr2R_24350001 RAL-381 914 chr2R 24353427 24353460 chr2R 24361789 24361822 roo 12 8362 1.5 6.0 3.8 2.5 8395 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-381 915 chr2R 24383827 24383848 chr2R 24383908 24383929 7 81 4.0 6.0 5.0 1.2 102 chr2R 24383827 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383929 exon mAChR-A - chr2R_7_24380001 chr2R_24380001 RAL-381 916 chr2R 24590097 24590146 chr2R 24590205 24590238 5 105 0.0 5.5 2.8 1.3 141 chr2R 24590097 intron pio + chr2R 24590168 intron pio + chr2R 24590238 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-381 917 chr2R 24647593 24647614 chr2R 24655150 24655171 412 11 7556 6.5 8.0 7.2 1.3 7578 chr2R 24647593 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_11_24650001 chr2R_24650001 RAL-381 918 chr2R 24647615 24647617 chr2R 24655144 24655171 412 5 7546 6.5 7.0 6.8 0.6 7556 chr2R 24647615 intergenic not near genes chr2R 24651393 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-381 919 chr2R 24719803 24719826 chr2R 24719914 24719935 6 111 4.5 5.0 4.8 1.0 132 chr2R 24719803 intron Mid1 - chr2R 24719869 intron Mid1 - chr2R 24719935 intron Mid1 - chr2R_6_24715001 chr2R_24715001 RAL-381 920 chr2R 24721252 24721277 chr2R 24721403 24721428 10 150 3.0 6.0 4.5 1.8 176 chr2R 24721252 intron Mid1 - chr2R 24721340 intron Mid1 - chr2R 24721428 intron Mid1 - chr2R_10_24720001 chr2R_24720001 RAL-381 921 chr2R 24727882 24727916 chr2R 24735390 24735424 mdg1 15 7507 2.0 4.0 3.0 3.8 7542 chr2R 24727882 intron Mid1 - chr2R 24731653 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-381 922 chr2R 24763616 24763643 chr2R 24765590 24765618 G2 8 1972 4.0 4.5 4.2 1.5 2002 chr2R 24763616 exon CG3894 + chr2R 24764617 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-381 923 chr2R 24859839 24859869 chr2R 24859925 24859955 11 84 2.0 1.5 1.8 3.9 116 chr2R 24859839 5` UTR CR44829 + chr2R 24859897 5` UTR CR44829 + chr2R 24859955 5` UTR CR44829 + chr2R_11_24855001 chr2R_24855001 RAL-381 924 chr2R 25004889 25004924 chr2R 25004967 25005001 17 76 4.0 3.5 3.8 3.5 112 chr2R 25004889 intron zip - chr2R 25004945 intron zip - chr2R 25005001 intron zip - chr2R_17_25000001 chr2R_25000001 RAL-381 925 chr2R 25014542 25014576 chr2R 25014618 25014652 15 76 3.5 3.5 3.5 3.3 110 chr2R 25014542 intron uzip + chr2R 25014597 intron uzip + chr2R 25014652 intron uzip + chr2R_15_25010001 chr2R_25010001 RAL-381 926 chr2R 25018348 25018371 chr2R 25018439 25018472 15 100 5.0 8.0 6.5 2.0 124 chr2R 25018348 intron uzip + chr2R 25018410 intron uzip + chr2R 25018472 intron uzip + chr2R_15_25015001 chr2R_25015001 RAL-381 927 chr2R 25022647 25022673 chr2R 25022731 25022757 6 83 2.0 1.0 1.5 2.4 110 chr2R 25022647 intron uzip + chr2R 25022702 intron uzip + chr2R 25022757 intron uzip + chr2R_6_25020001 chr2R_25020001 RAL-381 928 chr2R 25032697 25032728 chr2R 25032939 25032970 14 242 2.5 4.0 3.2 3.3 273 chr2R 25032697 intron Nplp1 + chr2R 25032834 intron Nplp1 + chr2R 25032970 intron Nplp1 + chr2R_14_25030001 chr2R_25030001 RAL-381 929 chr2R 25101274 25101304 chr2R 25101376 25101406 6 102 4.5 2.5 3.5 1.3 132 chr2R 25101274 intron lov - chr2R 25101340 intron lov - chr2R 25101406 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-381 930 chr2R 25102520 25102554 chr2R 25102689 25102722 10 167 1.0 5.5 3.2 2.4 202 chr2R 25102520 intron lov - chr2R 25102621 intron lov - chr2R 25102722 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-381 931 chr2R 25104777 25104810 chr2R 25104902 25104935 10 125 3.0 3.0 3.0 2.5 158 chr2R 25104777 intron lov - chr2R 25104856 intron lov - chr2R 25104935 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-381 932 chr2R 25131010 25131046 chr2R 25131087 25131123 8 77 1.5 2.0 1.8 2.9 113 chr2R 25131010 intron lov - chr2R 25131066 intron lov - chr2R 25131123 intron lov - chr2R_8_25130001 chr2R_25130001 RAL-381 933 chr2R 25141648 25141681 chr2R 25159338 25159371 roo 8 17690 1.5 2.0 1.8 2.9 17723 chr2R 25141648 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159371 intergenic not near genes chr2R_8_25150001 chr2R_25150001 RAL-381 934 chr2R 25167685 25167700 chr2R 25167767 25167782 10 82 2.5 1.5 2.0 3.3 97 chr2R 25167685 5` UTR CG34038 + chr2R 25167734 5` UTR CG34038 + chr2R 25167782 5` UTR CG34038 + chr2R_10_25165001 chr2R_25165001 RAL-381 935 chr3L 110209 110233 chr3L 119376 119399 roo 8 9166 5.0 5.0 5.0 1.3 9190 chr3L 110209 intergenic not near genes chr3L 114804 intergenic not near genes chr3L 119399 intergenic not near genes chr3L_8_110001 chr3L_110001 RAL-381 936 chr3L 134589 134625 chr3L 134738 134774 12 148 5.0 5.0 5.0 2.0 185 chr3L 134589 intron Pdk1 + chr3L 134682 intron Pdk1 + chr3L 134774 intron Pdk1 + chr3L_12_130001 chr3L_130001 RAL-381 937 chr3L 134629 134630 chr3L 10342764 10342770 4 10208142 4.5 1.5 3.0 1.0 10208141 chr3L 134629 intron Pdk1 + chr3L 5238700 intron shep - chr3L 10342770 intergenic not near genes chr3L_4_5235001 chr3L_5235001 RAL-381 938 chr3L 233267 233296 chr3L 233354 233383 4 87 2.0 2.5 2.2 1.2 116 chr3L 233267 intron CG34453 - chr3L 233325 exon CG34453 - chr3L 233383 intergenic CG34453 - chr3L_4_230001 chr3L_230001 RAL-381 939 chr3L 258250 258256 chr3L 258332 258337 5 81 10.5 5.0 7.8 0.6 87 chr3L 258250 5` UTR wac + chr3L 258294 5` UTR wac + chr3L 258337 5` UTR wac + chr3L_5_255001 chr3L_255001 RAL-381 940 chr3L 258257 258284 chr3L 258330 258366 16 80 6.5 4.5 5.5 2.5 109 chr3L 258257 5` UTR wac + chr3L 258312 5` UTR wac + chr3L 258366 5` UTR wac + chr3L_16_255001 chr3L_255001 RAL-381 941 chr3L 402687 402718 chr3L 409740 409771 297 11 7052 4.0 6.5 5.2 1.8 7084 chr3L 402687 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_11_405001 chr3L_405001 RAL-381 942 chr3L 421049 421085 chr3L 421142 421179 11 96 2.5 4.5 3.5 2.4 130 chr3L 421049 intergenic not near genes chr3L 421114 intergenic not near genes chr3L 421179 intergenic not near genes chr3L_11_420001 chr3L_420001 RAL-381 943 chr3L 491646 491666 chr3L 491728 491748 7 82 1.0 2.0 1.5 2.8 102 chr3L 491646 intron klar - chr3L 491697 intron klar - chr3L 491748 intron klar - chr3L_7_490001 chr3L_490001 RAL-381 944 chr3L 642482 642497 chr3L 642573 642585 6 90 1.5 3.0 2.2 1.9 103 chr3L 642482 5` UTR CR43334 + chr3L 642534 5` UTR CR43334 + chr3L 642585 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-381 945 chr3L 651386 651422 chr3L 651474 651510 12 87 3.5 2.5 3.0 3.0 124 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651510 intergenic CG3402 -,Gale + chr3L_12_650001 chr3L_650001 RAL-381 946 chr3L 705244 705260 chr3L 705320 705334 8 76 8.0 3.0 5.5 1.2 90 chr3L 705244 intergenic CR44514 + chr3L 705289 intergenic CR44514 + chr3L 705334 5` UTR CR44514 + chr3L_8_705001 chr3L_705001 RAL-381 947 chr3L 705897 705909 chr3L 705993 706005 4 96 4.5 0.5 2.5 1.1 108 chr3L 705897 intergenic CG13895 -,CR44514 + chr3L 705951 3` UTR CG13895 - chr3L 706005 3` UTR CG13895 - chr3L_4_705001 chr3L_705001 RAL-381 948 chr3L 789917 789935 chr3L 790402 790420 roo 5 485 4.5 2.5 3.5 1.1 503 chr3L 789917 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790420 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-381 949 chr3L 925177 925203 chr3L 932603 932629 mdg1 11 7426 5.0 3.0 4.0 2.2 7452 chr3L 925177 intron Glut1 + chr3L 928903 intron Glut1 + chr3L 932629 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-381 950 chr3L 939770 939800 chr3L 940891 940921 jockey 11 1120 9.0 2.5 5.8 1.6 1151 chr3L 939770 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-381 951 chr3L 1010999 1011025 chr3L 1011077 1011105 7 80 3.0 3.5 3.2 1.7 106 chr3L 1010999 intron trio - chr3L 1011052 intron trio - chr3L 1011105 intron trio - chr3L_7_1010001 chr3L_1010001 RAL-381 952 chr3L 1116356 1116384 chr3L 1116446 1116474 12 87 4.5 6.5 5.5 1.8 118 chr3L 1116356 intergenic not near genes chr3L 1116415 intergenic not near genes chr3L 1116474 intergenic not near genes chr3L_12_1115001 chr3L_1115001 RAL-381 953 chr3L 1145241 1145264 chr3L 1145319 1145343 10 78 3.5 0.0 1.8 3.6 102 chr3L 1145241 intron bab2 - chr3L 1145292 intron bab2 - chr3L 1145343 intron bab2 - chr3L_10_1145001 chr3L_1145001 RAL-381 954 chr3L 1154136 1154157 chr3L 1163286 1163307 roo 5 9150 3.0 3.5 3.2 1.2 9171 chr3L 1154136 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163307 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-381 955 chr3L 1219596 1219625 chr3L 1227329 1227331 412 21 7730 2.5 4.5 3.5 4.7 7735 chr3L 1219596 intron mwh + chr3L 1223464 intron mwh + chr3L 1227331 intron mwh + chr3L_21_1220001 chr3L_1220001 RAL-381 956 chr3L 1364049 1364064 chr3L 1364135 1364150 5 85 0.0 5.0 2.5 1.4 101 chr3L 1364049 intron Ptp61F - chr3L 1364100 intron Ptp61F - chr3L 1364150 intron Ptp61F - chr3L_5_1360001 chr3L_1360001 RAL-381 957 chr3L 1374430 1374459 chr3L 1374507 1374513 6 71 5.5 3.0 4.2 1.2 83 chr3L 1374430 intron,intron Ptp61F -,ru + chr3L 1374472 intron,intron Ptp61F -,ru + chr3L 1374513 intron,intron Ptp61F -,ru + chr3L_6_1370001 chr3L_1370001 RAL-381 958 chr3L 1459323 1459357 chr3L 1459557 1459585 13 228 6.0 3.0 4.5 2.4 262 chr3L 1459323 intron Ptp61F - chr3L 1459454 intron Ptp61F - chr3L 1459585 intron Ptp61F - chr3L_13_1455001 chr3L_1455001 RAL-381 959 chr3L 1505995 1506032 chr3L 1513592 1513629 17.6 19 7597 2.0 6.5 4.2 3.7 7634 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_19_1505001 chr3L_1505001 RAL-381 960 chr3L 1639223 1639241 chr3L 1639399 1639422 5 180 3.5 4.0 3.8 1.0 199 chr3L 1639223 5` UTR metl - chr3L 1639322 intergenic metl -,Bgb + chr3L 1639422 intergenic metl -,Bgb + chr3L_5_1635001 chr3L_1635001 RAL-381 961 chr3L 1846657 1846681 chr3L 1846759 1846785 13 103 2.0 2.5 2.2 4.1 128 chr3L 1846657 intergenic not near genes chr3L 1846721 intergenic not near genes chr3L 1846785 intergenic not near genes chr3L_13_1845001 chr3L_1845001 RAL-381 962 chr3L 1848639 1848670 chr3L 1848717 1848748 6 78 3.0 1.5 2.2 1.9 109 chr3L 1848639 intergenic not near genes chr3L 1848694 intergenic not near genes chr3L 1848748 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-381 963 chr3L 1936917 1936949 chr3L 1937908 1937939 9 988 14.0 20.5 17.2 0.5 1022 chr3L 1936917 intron CG5687 - chr3L 1937428 intron CG5687 - chr3L 1937939 intron CG5687 - chr3L_9_1935001 chr3L_1935001 RAL-381 964 chr3L 1936690 1936696 chr3L 1938656 1938677 5 1971 11.0 38.0 24.5 0.2 1987 chr3L 1936690 intron CG5687 - chr3L 1937684 intron CG5687 - chr3L 1938677 5` UTR CG5687 - chr3L_5_1935001 chr3L_1935001 RAL-381 965 chr3L 2006470 2006501 chr3L 2006550 2006578 15 78 4.0 6.0 5.0 2.5 108 chr3L 2006470 intergenic not near genes chr3L 2006524 intergenic not near genes chr3L 2006578 intergenic not near genes chr3L_15_2005001 chr3L_2005001 RAL-381 966 chr3L 2058577 2058615 chr3L 2058743 2058781 11 166 18.5 17.5 18.0 0.6 204 chr3L 2058577 exon sls - chr3L 2058679 exon sls - chr3L 2058781 exon sls - chr3L_11_2055001 chr3L_2055001 RAL-381 967 chr3L 2139208 2139234 chr3L 2139288 2139315 11 81 2.5 6.0 4.2 2.1 107 chr3L 2139208 intron zormin - chr3L 2139262 intron zormin - chr3L 2139315 intron zormin - chr3L_11_2135001 chr3L_2135001 RAL-381 968 chr3L 2168784 2168806 chr3L 2168875 2168897 8 91 5.0 6.0 5.5 1.2 113 chr3L 2168784 exon CG15879 - chr3L 2168840 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-381 969 chr3L 2176683 2176710 chr3L 2177092 2177119 7 407 2.5 4.0 3.2 1.7 436 chr3L 2176683 intergenic not near genes chr3L 2176901 intergenic not near genes chr3L 2177119 intergenic not near genes chr3L_7_2175001 chr3L_2175001 RAL-381 970 chr3L 2189135 2189144 chr3L 2189686 2189698 5 554 0.0 10.0 5.0 0.8 563 chr3L 2189135 intergenic CG5707 - chr3L 2189416 exon CG5707 - chr3L 2189698 exon CG5707 - chr3L_5_2185001 chr3L_2185001 RAL-381 971 chr3L 2199813 2199821 chr3L 2199889 2199897 4 76 1.5 5.0 3.2 1.0 84 chr3L 2199813 intergenic not near genes chr3L 2199855 intergenic not near genes chr3L 2199897 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-381 972 chr3L 2279048 2279066 chr3L 2279195 2279213 9 147 0.0 5.5 2.8 2.4 165 chr3L 2279048 intergenic not near genes chr3L 2279130 intergenic not near genes chr3L 2279213 intergenic not near genes chr3L_9_2275001 chr3L_2275001 RAL-381 973 chr3L 2290244 2290276 chr3L 2290325 2290357 8 81 0.0 3.5 1.8 2.9 113 chr3L 2290244 intron MsR2 + chr3L 2290300 intron MsR2 + chr3L 2290357 intron MsR2 + chr3L_8_2290001 chr3L_2290001 RAL-381 974 chr3L 2303038 2303069 chr3L 2303173 2303204 8 134 3.5 2.5 3.0 2.0 166 chr3L 2303038 intergenic not near genes chr3L 2303121 intergenic not near genes chr3L 2303204 intergenic not near genes chr3L_8_2300001 chr3L_2300001 RAL-381 975 chr3L 2303567 2303597 chr3L 2303705 2303735 18 134 1.5 3.5 2.5 5.1 168 chr3L 2303567 intergenic not near genes chr3L 2303651 intergenic not near genes chr3L 2303735 intergenic not near genes chr3L_18_2300001 chr3L_2300001 RAL-381 976 chr3L 2308017 2308036 chr3L 2308113 2308142 10 100 5.0 3.5 4.2 1.9 125 chr3L 2308017 intergenic not near genes chr3L 2308080 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_10_2305001 chr3L_2305001 RAL-381 977 chr3L 2447506 2447534 chr3L 2456662 2456689 roo 15 9155 2.5 8.0 5.2 2.4 9183 chr3L 2447506 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_15_2450001 chr3L_2450001 RAL-381 978 chr3L 2469636 2469653 chr3L 2470060 2470077 11 423 3.5 1.5 2.5 3.1 441 chr3L 2469636 intron CG45186 + chr3L 2469856 intron CG45186 + chr3L 2470077 intron CG45186 + chr3L_11_2465001 chr3L_2465001 RAL-381 979 chr3L 2591715 2591746 chr3L 2591802 2591833 4 82 1.5 2.0 1.8 1.4 118 chr3L 2591715 intron dos + chr3L 2591774 intron dos + chr3L 2591833 intron dos + chr3L_4_2590001 chr3L_2590001 RAL-381 980 chr3L 2683943 2683978 chr3L 2684019 2684054 10 76 3.5 2.0 2.8 2.6 111 chr3L 2683943 intron Fife - chr3L 2683998 intron Fife - chr3L 2684054 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-381 981 chr3L 2751456 2751468 chr3L 2755751 2755763 F-element 4 4295 5.5 7.0 6.2 0.6 4307 chr3L 2751456 intron Mrtf - chr3L 2753610 intron Mrtf - chr3L 2755763 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-381 982 chr3L 2795737 2795742 chr3L 2795860 2795865 7 123 4.5 9.5 7.0 0.9 128 chr3L 2795737 intron CG43444 - chr3L 2795801 intron CG43444 - chr3L 2795865 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-381 983 chr3L 2899575 2899607 chr3L 2899687 2899720 10 112 5.0 1.0 3.0 2.5 145 chr3L 2899575 intron Shab + chr3L 2899648 intron Shab + chr3L 2899720 intron Shab + chr3L_10_2895001 chr3L_2895001 RAL-381 984 chr3L 2927840 2927867 chr3L 2936117 2936144 Tirant 7 8276 3.0 1.5 2.2 2.2 8304 chr3L 2927840 intron Shab + chr3L 2931992 intron Shab + chr3L 2936144 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-381 985 chr3L 2974322 2974346 chr3L 2974391 2974392 7 68 0.0 3.5 1.8 2.5 70 chr3L 2974322 intergenic not near genes chr3L 2974357 intergenic not near genes chr3L 2974392 intergenic not near genes chr3L_7_2970001 chr3L_2970001 RAL-381 986 chr3L 2985291 2985315 chr3L 2985370 2985394 11 79 5.0 4.0 4.5 2.0 103 chr3L 2985291 intergenic not near genes chr3L 2985342 intergenic not near genes chr3L 2985394 intergenic not near genes chr3L_11_2985001 chr3L_2985001 RAL-381 987 chr3L 3050906 3050928 chr3L 3050992 3051015 9 87 1.5 3.5 2.5 2.6 109 chr3L 3050906 intron CG32485 + chr3L 3050960 intron CG32485 + chr3L 3051015 exon CG32485 + chr3L_9_3050001 chr3L_3050001 RAL-381 988 chr3L 3061286 3061317 chr3L 3069869 3069900 Tirant 6 8576 3.0 3.5 3.2 1.4 8614 chr3L 3061286 intron CG32486 - chr3L 3065593 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-381 989 chr3L 3281465 3281476 chr3L 3281953 3281959 Doc 5 492 0.5 14.5 7.5 0.6 494 chr3L 3281465 intron CG12017 + chr3L 3281712 intron CG12017 + chr3L 3281959 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-381 990 chr3L 3284443 3284465 chr3L 3284527 3284549 8 82 4.0 7.0 5.5 1.2 106 chr3L 3284443 intron CG12017 + chr3L 3284496 intron CG12017 + chr3L 3284549 intron CG12017 + chr3L_8_3280001 chr3L_3280001 RAL-381 991 chr3L 3475082 3475112 chr3L 3475516 3475556 jockey 13 443 2.0 4.0 3.0 3.2 474 chr3L 3475082 intron CG42324 + chr3L 3475319 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_13_3475001 chr3L_3475001 RAL-381 992 chr3L 3601303 3601328 chr3L 3606612 3606639 copia 12 5310 6.5 5.0 5.8 1.8 5336 chr3L 3601303 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_12_3600001 chr3L_3600001 RAL-381 993 chr3L 3619397 3619434 chr3L 3619491 3619528 7 94 1.0 2.0 1.5 2.8 131 chr3L 3619397 intergenic not near genes chr3L 3619462 intergenic not near genes chr3L 3619528 intergenic not near genes chr3L_7_3615001 chr3L_3615001 RAL-381 994 chr3L 3709458 3709466 chr3L 3709540 3709548 6 82 1.5 4.5 3.0 1.5 90 chr3L 3709458 intergenic CR45675 + chr3L 3709503 intergenic not near genes chr3L 3709548 intergenic not near genes chr3L_6_3705001 chr3L_3705001 RAL-381 995 chr3L 3772456 3772474 chr3L 3772532 3772550 4 76 2.5 3.5 3.0 1.0 94 chr3L 3772456 intron CG32264 - chr3L 3772503 intron CG32264 - chr3L 3772550 intron CG32264 - chr3L_4_3770001 chr3L_3770001 RAL-381 996 chr3L 3783274 3783289 chr3L 3783351 3783366 5 77 2.5 2.0 2.2 1.6 92 chr3L 3783274 intron CG32264 - chr3L 3783320 intron CG32264 - chr3L 3783366 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-381 997 chr3L 3833737 3833770 chr3L 3833978 3834011 pogo 9 241 2.5 0.0 1.2 4.1 274 chr3L 3833737 intron enc + chr3L 3833874 intron enc + chr3L 3834011 intron enc + chr3L_9_3830001 chr3L_3830001 RAL-381 998 chr3L 3890961 3890984 chr3L 3891042 3891064 5 81 2.5 0.0 1.2 2.3 103 chr3L 3890961 intergenic not near genes chr3L 3891012 intergenic not near genes chr3L 3891064 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-381 999 chr3L 4052249 4052278 chr3L 4052325 4052353 6 76 0.5 1.5 1.0 3.0 104 chr3L 4052249 intron CG1136 + chr3L 4052301 intron CG1136 + chr3L 4052353 intron CG1136 + chr3L_6_4050001 chr3L_4050001 RAL-381 1000 chr3L 4058839 4058875 chr3L 4058919 4058955 10 80 2.5 2.5 2.5 2.9 116 chr3L 4058839 3` UTR CG1136 + chr3L 4058897 3` UTR CG1136 + chr3L 4058955 3` UTR CG1136 + chr3L_10_4055001 chr3L_4055001 RAL-381 1001 chr3L 4342410 4342441 chr3L 4342489 4342517 13 77 3.5 3.5 3.5 2.9 107 chr3L 4342410 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342517 intron Cip4 - chr3L_13_4340001 chr3L_4340001 RAL-381 1002 chr3L 4344891 4345067 chr3L 4344998 4345143 7 94 0.0 0.0 0.0 7.0 252 chr3L 4344891 intron Cip4 - chr3L 4345017 intron Cip4 - chr3L 4345143 intron Cip4 - chr3L_7_4345001 chr3L_4345001 RAL-381 1003 chr3L 4364205 4364232 chr3L 4364294 4364321 4 89 0.0 3.0 1.5 1.6 116 chr3L 4364205 intergenic Cip4 -,mRpS6 + chr3L 4364263 intergenic Cip4 -,mRpS6 + chr3L 4364321 intergenic Cip4 -,mRpS6 + chr3L_4_4360001 chr3L_4360001 RAL-381 1004 chr3L 4385191 4385215 chr3L 4385344 4385368 7 152 1.0 1.0 1.0 3.5 177 chr3L 4385191 intron slow + chr3L 4385280 intron slow + chr3L 4385368 intron slow + chr3L_7_4385001 chr3L_4385001 RAL-381 1005 chr3L 4390026 4390036 chr3L 4390113 4390123 4 87 3.0 3.5 3.2 1.0 97 chr3L 4390026 intron slow + chr3L 4390074 intron slow + chr3L 4390123 intron slow + chr3L_4_4390001 chr3L_4390001 RAL-381 1006 chr3L 4503905 4503930 chr3L 4503982 4504007 6 77 1.5 0.5 1.0 3.0 102 chr3L 4503905 intron NT1 - chr3L 4503956 intron NT1 - chr3L 4504007 intron NT1 - chr3L_6_4500001 chr3L_4500001 RAL-381 1007 chr3L 4580305 4580336 chr3L 4580391 4580422 8 82 2.5 4.0 3.2 1.9 117 chr3L 4580305 intron CG42540 + chr3L 4580364 intron CG42540 + chr3L 4580422 intron CG42540 + chr3L_8_4580001 chr3L_4580001 RAL-381 1008 chr3L 4676036 4676042 chr3L 4676117 4676123 4 80 1.5 0.0 0.8 2.2 87 chr3L 4676036 intron axo - chr3L 4676080 intron axo - chr3L 4676123 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-381 1009 chr3L 4691918 4691929 chr3L 4692008 4692019 4 90 2.5 0.0 1.2 1.8 101 chr3L 4691918 intergenic not near genes chr3L 4691968 intergenic not near genes chr3L 4692019 intergenic not near genes chr3L_4_4690001 chr3L_4690001 RAL-381 1010 chr3L 4748703 4748724 chr3L 4748794 4748810 9 88 7.0 3.0 5.0 1.5 107 chr3L 4748703 intron RhoGEF64C + chr3L 4748756 intron RhoGEF64C + chr3L 4748810 intron RhoGEF64C + chr3L_9_4745001 chr3L_4745001 RAL-381 1011 chr3L 4901128 4901153 chr3L 4907317 4907343 diver 14 6190 10.5 9.0 9.8 1.3 6215 chr3L 4901128 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_14_4900001 chr3L_4900001 RAL-381 1012 chr3L 4898332 4898352 chr3L 4909494 4909514 diver 7 11162 19.0 25.5 22.2 0.3 11182 chr3L 4898332 3` UTR CG13705 + chr3L 4903923 intergenic not near genes chr3L 4909514 intergenic not near genes chr3L_7_4900001 chr3L_4900001 RAL-381 1013 chr3L 4941463 4941484 chr3L 4941542 4941563 8 79 3.5 6.5 5.0 1.3 100 chr3L 4941463 intron Con - chr3L 4941513 intron Con - chr3L 4941563 intron Con - chr3L_8_4940001 chr3L_4940001 RAL-381 1014 chr3L 5045458 5045484 chr3L 5050239 5050265 Doc 6 4781 2.5 1.0 1.8 2.1 4807 chr3L 5045458 intron Con - chr3L 5047862 intron Con - chr3L 5050265 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-381 1015 chr3L 5104487 5104509 chr3L 5124620 5124643 6 20134 2.5 5.5 4.0 1.2 20156 chr3L 5104487 intergenic not near genes chr3L 5114565 intergenic not near genes chr3L 5124643 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-381 1016 chr3L 5212241 5212269 chr3L 5212324 5212345 10 77 5.0 5.0 5.0 1.7 104 chr3L 5212241 intron shep - chr3L 5212293 intron shep - chr3L 5212345 intron shep - chr3L_10_5210001 chr3L_5210001 RAL-381 1017 chr3L 5265351 5265379 chr3L 5265452 5265487 15 105 7.0 4.0 5.5 2.3 136 chr3L 5265351 intron shep - chr3L 5265419 intron shep - chr3L 5265487 intron shep - chr3L_15_5265001 chr3L_5265001 RAL-381 1018 chr3L 5356401 5356405 chr3L 5356481 5356485 4 80 9.0 0.0 4.5 0.7 84 chr3L 5356401 intergenic Klp64D -,lama - chr3L 5356443 intergenic Klp64D - chr3L 5356485 intergenic Klp64D - chr3L_4_5355001 chr3L_5355001 RAL-381 1019 chr3L 5482942 5483095 chr3L 5483151 5483176 21 133 0.5 0.5 0.5 14.0 234 chr3L 5482942 exon CG4835 + chr3L 5483059 exon CG4835 + chr3L 5483176 exon CG4835 + chr3L_21_5480001 chr3L_5480001 RAL-381 1020 chr3L 5498415 5498432 chr3L 5498492 5498508 7 75 2.0 6.0 4.0 1.4 93 chr3L 5498415 exon blanks - chr3L 5498462 exon blanks - chr3L 5498508 exon blanks - chr3L_7_5495001 chr3L_5495001 RAL-381 1021 chr3L 5531615 5531636 chr3L 5532253 5532274 5 638 2.0 3.0 2.5 1.4 659 chr3L 5531615 intergenic not near genes chr3L 5531944 intergenic not near genes chr3L 5532274 intergenic not near genes chr3L_5_5530001 chr3L_5530001 RAL-381 1022 chr3L 5537721 5537751 chr3L 5538061 5538086 jockey 4 337 1.5 3.0 2.2 1.2 365 chr3L 5537721 intergenic not near genes chr3L 5537904 intergenic not near genes chr3L 5538086 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-381 1023 chr3L 5558353 5558386 chr3L 5558442 5558475 22 88 2.5 6.0 4.2 4.2 122 chr3L 5558353 intergenic not near genes chr3L 5558414 intergenic not near genes chr3L 5558475 intergenic not near genes chr3L_22_5555001 chr3L_5555001 RAL-381 1024 chr3L 5572140 5572157 chr3L 5572250 5572267 8 109 2.5 6.5 4.5 1.5 127 chr3L 5572140 intron Msr-110 - chr3L 5572204 intron Msr-110 - chr3L 5572267 intron Msr-110 - chr3L_8_5570001 chr3L_5570001 RAL-381 1025 chr3L 5582004 5582025 chr3L 5582081 5582102 18 75 1.5 0.0 0.8 10.0 98 chr3L 5582004 intergenic not near genes chr3L 5582053 intergenic not near genes chr3L 5582102 intergenic not near genes chr3L_18_5580001 chr3L_5580001 RAL-381 1026 chr3L 5926329 5926347 chr3L 5926509 5926516 BS 8 184 4.5 7.0 5.8 1.2 187 chr3L 5926329 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926516 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-381 1027 chr3L 6001687 6001717 chr3L 6004387 6004417 jockey 8 2700 1.0 0.5 0.8 4.4 2730 chr3L 6001687 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_8_6000001 chr3L_6000001 RAL-381 1028 chr3L 6040373 6040394 chr3L 6042729 6042750 Doc 5 2356 2.5 5.0 3.8 1.0 2377 chr3L 6040373 intergenic Jon65Aiv + chr3L 6041562 intergenic not near genes chr3L 6042750 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-381 1029 chr3L 6052653 6052665 chr3L 6052733 6052749 5 83 9.0 6.5 7.8 0.6 96 chr3L 6052653 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-381 1030 chr3L 6220914 6220946 chr3L 6230066 6230098 roo 15 9151 6.0 8.0 7.0 1.9 9184 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_15_6225001 chr3L_6225001 RAL-381 1031 chr3L 6335008 6335041 chr3L 6335479 6335512 297 8 467 1.5 3.5 2.5 2.3 504 chr3L 6335008 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335512 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-381 1032 chr3L 6353376 6353407 chr3L 6353455 6353487 9 75 3.0 4.0 3.5 2.0 111 chr3L 6353376 intergenic not near genes chr3L 6353432 intergenic not near genes chr3L 6353487 intergenic not near genes chr3L_9_6350001 chr3L_6350001 RAL-381 1033 chr3L 6401278 6401308 chr3L 6401356 6401387 10 79 3.0 5.0 4.0 2.0 109 chr3L 6401278 intron CG42747 + chr3L 6401332 intron CG42747 + chr3L 6401387 intron CG42747 + chr3L_10_6400001 chr3L_6400001 RAL-381 1034 chr3L 6642881 6643169 chr3L 6642961 6643257 16 83 1.0 0.0 0.5 10.7 376 chr3L 6642881 intergenic CR45239 + chr3L 6643069 intergenic CR45239 + chr3L 6643257 intergenic CR45239 + chr3L_16_6640001 chr3L_6640001 RAL-381 1035 chr3L 6654242 6654250 chr3L 6654469 6654499 5 244 5.0 5.0 5.0 0.8 257 chr3L 6654242 intergenic not near genes chr3L 6654370 intergenic not near genes chr3L 6654499 intergenic not near genes chr3L_5_6650001 chr3L_6650001 RAL-381 1036 chr3L 6855931 6855956 chr3L 6860715 6860740 Doc 5 4784 5.0 3.5 4.2 1.0 4809 chr3L 6855931 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860740 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-381 1037 chr3L 6887516 6887547 chr3L 6895008 6895039 roo 8 7490 3.5 2.0 2.8 2.1 7523 chr3L 6887516 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895039 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-381 1038 chr3L 6908013 6908038 chr3L 6908098 6908101 6 81 5.0 0.0 2.5 1.7 88 chr3L 6908013 intergenic not near genes chr3L 6908057 intergenic not near genes chr3L 6908101 intergenic not near genes chr3L_6_6905001 chr3L_6905001 RAL-381 1039 chr3L 6974511 6974525 chr3L 6974597 6974626 14 99 0.0 3.5 1.8 5.0 115 chr3L 6974511 intron Galphai - chr3L 6974568 intron Galphai - chr3L 6974626 intron Galphai - chr3L_14_6970001 chr3L_6970001 RAL-381 1040 chr3L 6990720 6990752 chr3L 6990800 6990832 8 80 2.0 2.0 2.0 2.7 112 chr3L 6990720 5` UTR bin + chr3L 6990776 5` UTR bin + chr3L 6990832 exon bin + chr3L_8_6990001 chr3L_6990001 RAL-381 1041 chr3L 7024382 7024413 chr3L 7024459 7024490 9 77 4.0 1.0 2.5 2.6 108 chr3L 7024382 intron Mp + chr3L 7024436 intron Mp + chr3L 7024490 intron Mp + chr3L_9_7020001 chr3L_7020001 RAL-381 1042 chr3L 7033171 7033204 chr3L 7033251 7033283 18 79 4.0 9.0 6.5 2.4 112 chr3L 7033171 intron Mp + chr3L 7033227 intron Mp + chr3L 7033283 intron Mp + chr3L_18_7030001 chr3L_7030001 RAL-381 1043 chr3L 7104047 7104067 chr3L 7104151 7104171 8 104 6.5 2.5 4.5 1.5 124 chr3L 7104047 intron form3 + chr3L 7104109 intron form3 + chr3L 7104171 intron form3 + chr3L_8_7100001 chr3L_7100001 RAL-381 1044 chr3L 7112584 7112617 chr3L 7112671 7112704 11 86 1.0 1.0 1.0 5.5 120 chr3L 7112584 intron form3 + chr3L 7112644 intron form3 + chr3L 7112704 intron form3 + chr3L_11_7110001 chr3L_7110001 RAL-381 1045 chr3L 7285331 7285350 chr3L 7285440 7285462 12 111 5.0 4.5 4.8 2.1 131 chr3L 7285331 intron unc-13-4A - chr3L 7285396 intron unc-13-4A - chr3L 7285462 intron unc-13-4A - chr3L_12_7285001 chr3L_7285001 RAL-381 1046 chr3L 7292108 7292119 chr3L 7292188 7292199 6 80 5.0 3.5 4.2 1.2 91 chr3L 7292108 intron unc-13-4A - chr3L 7292154 intron unc-13-4A - chr3L 7292199 intron unc-13-4A - chr3L_6_7290001 chr3L_7290001 RAL-381 1047 chr3L 7311588 7311616 chr3L 7311678 7311707 7 91 4.0 1.5 2.8 1.8 119 chr3L 7311588 intron unc-13-4A - chr3L 7311648 intron unc-13-4A - chr3L 7311707 intron unc-13-4A - chr3L_7_7310001 chr3L_7310001 RAL-381 1048 chr3L 7355719 7355738 chr3L 7363627 7363645 10 7909 33.0 39.0 36.0 0.3 7926 chr3L 7355719 exon CTCF - chr3L 7359682 exon pst - chr3L 7363645 exon Sec63 + chr3L_10_7355001 chr3L_7355001 RAL-381 1049 chr3L 7355717 7355747 chr3L 7363648 7363654 6 7916 36.0 37.5 36.8 0.2 7937 chr3L 7355717 exon CTCF - chr3L 7359686 exon pst - chr3L 7363654 exon Sec63 + chr3L_6_7355001 chr3L_7355001 RAL-381 1050 chr3L 7377320 7377338 chr3L 7380425 7380443 297 5 3105 2.5 3.0 2.8 1.3 3123 chr3L 7377320 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380443 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-381 1051 chr3L 7450689 7450713 chr3L 7450772 7450796 8 83 3.5 3.5 3.5 1.8 107 chr3L 7450689 intron CG42458 + chr3L 7450742 intron CG42458 + chr3L 7450796 intron CG42458 + chr3L_8_7450001 chr3L_7450001 RAL-381 1052 chr3L 7480057 7480072 chr3L 7480146 7480161 6 89 1.5 2.0 1.8 2.1 104 chr3L 7480057 intergenic not near genes chr3L 7480109 intergenic not near genes chr3L 7480161 intergenic not near genes chr3L_6_7480001 chr3L_7480001 RAL-381 1053 chr3L 7498755 7498792 chr3L 7503533 7503551 F-element 5 4774 3.0 1.0 2.0 1.7 4796 chr3L 7498755 5` UTR CG8539 - chr3L 7501153 intergenic not near genes chr3L 7503551 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-381 1054 chr3L 7505417 7505443 chr3L 7505492 7505508 8 74 0.5 3.5 2.0 2.7 91 chr3L 7505417 intergenic CG7548 - chr3L 7505462 intergenic CG7548 - chr3L 7505508 intergenic CG7548 - chr3L_8_7505001 chr3L_7505001 RAL-381 1055 chr3L 7574852 7574857 chr3L 7574928 7574933 4 76 0.0 0.0 0.0 4.0 81 chr3L 7574852 intergenic not near genes chr3L 7574892 intergenic not near genes chr3L 7574933 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-381 1056 chr3L 7581634 7581655 chr3L 7581708 7581739 9 79 4.5 3.5 4.0 1.8 105 chr3L 7581634 intergenic not near genes chr3L 7581686 intergenic not near genes chr3L 7581739 intergenic not near genes chr3L_9_7580001 chr3L_7580001 RAL-381 1057 chr3L 7591161 7591181 chr3L 7591237 7591264 5 80 2.0 3.0 2.5 1.4 103 chr3L 7591161 intergenic CG7716 - chr3L 7591212 intergenic CG7716 - chr3L 7591264 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-381 1058 chr3L 7793722 7793744 chr3L 7800774 7800796 297 5 7051 3.0 3.0 3.0 1.2 7074 chr3L 7793722 intron CG32369 - chr3L 7797259 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-381 1059 chr3L 7845396 7845404 chr3L 7845479 7845487 7 82 3.0 0.0 1.5 2.8 91 chr3L 7845396 intron Pdp1 - chr3L 7845442 intron Pdp1 - chr3L 7845487 intron Pdp1 - chr3L_7_7845001 chr3L_7845001 RAL-381 1060 chr3L 7869667 7869673 chr3L 7869745 7869749 4 77 12.0 5.5 8.8 0.4 82 chr3L 7869667 exon CG32365 + chr3L 7869708 exon CG32365 + chr3L 7869749 exon CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-381 1061 chr3L 7885945 7885975 chr3L 7889758 7889789 Stalker4 8 3814 5.0 18.5 11.8 0.6 3844 chr3L 7885945 intron CG32365 + chr3L 7887867 intron CG32365 + chr3L 7889789 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-381 1062 chr3L 7886518 7886544 chr3L 7889036 7889062 Stalker4 8 2518 2.0 3.0 2.5 2.3 2544 chr3L 7886518 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-381 1063 chr3L 7885993 7886007 chr3L 7890905 7890920 Stalker4 5 4912 7.0 27.0 17.0 0.3 4927 chr3L 7885993 intron CG32365 + chr3L 7888456 intron CG32365 + chr3L 7890920 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-381 1064 chr3L 7940089 7940112 chr3L 7940192 7940215 6 103 0.0 3.5 1.8 2.1 126 chr3L 7940089 intergenic not near genes chr3L 7940152 intergenic not near genes chr3L 7940215 intergenic not near genes chr3L_6_7940001 chr3L_7940001 RAL-381 1065 chr3L 7985376 7985394 chr3L 7987705 7987723 NOF 4 2329 6.0 6.0 6.0 0.6 2347 chr3L 7985376 intron nmo + chr3L 7986550 intron nmo + chr3L 7987723 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-381 1066 chr3L 8002947 8002958 chr3L 8003319 8003325 4 371 3.0 2.0 2.5 1.1 378 chr3L 8002947 intron nmo + chr3L 8003136 intron nmo + chr3L 8003325 intron nmo + chr3L_4_8000001 chr3L_8000001 RAL-381 1067 chr3L 8019711 8019736 chr3L 8024121 8024150 NOF 5 4411 0.0 4.5 2.2 1.6 4439 chr3L 8019711 intron nmo + chr3L 8021930 intron nmo + chr3L 8024150 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-381 1068 chr3L 8158195 8158330 chr3L 8158280 8158415 7 85 0.5 0.5 0.5 4.7 220 chr3L 8158195 intron CG42445 - chr3L 8158305 intron CG42445 - chr3L 8158415 intron CG42445 - chr3L_7_8155001 chr3L_8155001 RAL-381 1069 chr3L 8364528 8364536 chr3L 8364619 8364627 4 91 4.5 1.5 3.0 1.0 99 chr3L 8364528 intergenic not near genes chr3L 8364578 intergenic not near genes chr3L 8364627 intergenic not near genes chr3L_4_8360001 chr3L_8360001 RAL-381 1070 chr3L 8371734 8371753 chr3L 8371820 8371839 4 86 0.0 5.0 2.5 1.1 105 chr3L 8371734 intergenic not near genes chr3L 8371786 intergenic not near genes chr3L 8371839 intergenic not near genes chr3L_4_8370001 chr3L_8370001 RAL-381 1071 chr3L 8392761 8392786 chr3L 8392847 8392872 6 86 3.0 4.5 3.8 1.2 111 chr3L 8392761 intergenic Jon66Cii -,Jon66Ci + chr3L 8392816 intergenic Jon66Cii -,Jon66Ci + chr3L 8392872 exon Jon66Cii - chr3L_6_8390001 chr3L_8390001 RAL-381 1072 chr3L 8456477 8456489 chr3L 8456572 8456583 5 94 8.5 19.0 13.8 0.3 106 chr3L 8456477 intron Gug + chr3L 8456530 intron Gug + chr3L 8456583 intron Gug + chr3L_5_8455001 chr3L_8455001 RAL-381 1073 chr3L 8498295 8498329 chr3L 8505762 8505796 blood 8 7466 0.0 2.5 1.2 3.6 7501 chr3L 8498295 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505796 intron CG43163 - chr3L_8_8500001 chr3L_8500001 RAL-381 1074 chr3L 8519481 8519499 chr3L 8519864 8519883 5 384 2.5 4.5 3.5 1.1 402 chr3L 8519481 intron GstO3 + chr3L 8519682 exon GstO3 + chr3L 8519883 exon GstO3 + chr3L_5_8515001 chr3L_8515001 RAL-381 1075 chr3L 8719117 8719138 chr3L 8719200 8719216 14 82 4.0 5.0 4.5 2.5 99 chr3L 8719117 3` UTR SrpRbeta - chr3L 8719166 3` UTR SrpRbeta - chr3L 8719216 3` UTR SrpRbeta - chr3L_14_8715001 chr3L_8715001 RAL-381 1076 chr3L 8773629 8773643 chr3L 8773720 8773734 7 91 6.0 11.0 8.5 0.7 105 chr3L 8773629 intron Fhos + chr3L 8773682 intron Fhos + chr3L 8773734 intron Fhos + chr3L_7_8770001 chr3L_8770001 RAL-381 1077 chr3L 8791277 8791294 chr3L 8796697 8796712 I-element 6 5419 6.0 0.0 3.0 1.5 5435 chr3L 8791277 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796712 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-381 1078 chr3L 8839727 8839750 chr3L 8839807 8839830 7 80 1.5 0.0 0.8 3.9 103 chr3L 8839727 intron dally + chr3L 8839778 intron dally + chr3L 8839830 intron dally + chr3L_7_8835001 chr3L_8835001 RAL-381 1079 chr3L 8849207 8849244 chr3L 8849287 8849324 13 78 4.5 0.5 2.5 3.7 117 chr3L 8849207 intron dally + chr3L 8849266 intron dally + chr3L 8849324 intron dally + chr3L_13_8845001 chr3L_8845001 RAL-381 1080 chr3L 8907331 8907365 chr3L 8907409 8907443 9 78 3.0 0.0 1.5 3.6 112 chr3L 8907331 intron mfr - chr3L 8907387 intron mfr - chr3L 8907443 intron mfr - chr3L_9_8905001 chr3L_8905001 RAL-381 1081 chr3L 9011127 9011156 chr3L 9011214 9011243 7 87 1.0 1.0 1.0 3.5 116 chr3L 9011127 intergenic not near genes chr3L 9011185 intergenic not near genes chr3L 9011243 intergenic not near genes chr3L_7_9010001 chr3L_9010001 RAL-381 1082 chr3L 9013689 9013692 chr3L 18417066 18417066 9 9403375 25.0 15.5 20.2 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_9_13715001 chr3L_13715001 RAL-381 1083 chr3L 9076926 9076957 chr3L 9084485 9084517 412 9 7560 5.0 8.0 6.5 1.2 7591 chr3L 9076926 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084517 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-381 1084 chr3L 9109750 9109777 chr3L 9110355 9110382 9 604 4.0 7.0 5.5 1.4 632 chr3L 9109750 intron bol - chr3L 9110066 intron bol - chr3L 9110382 intron bol - chr3L_9_9110001 chr3L_9110001 RAL-381 1085 chr3L 9115243 9115275 chr3L 9115326 9115358 9 82 3.5 3.0 3.2 2.1 115 chr3L 9115243 intron bol - chr3L 9115300 intron bol - chr3L 9115358 intron bol - chr3L_9_9115001 chr3L_9115001 RAL-381 1086 chr3L 9130578 9130582 chr3L 9134322 9134343 412 4 3756 5.0 7.0 6.0 0.6 3765 chr3L 9130578 intergenic bol - chr3L 9132460 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-381 1087 chr3L 9191873 9191907 chr3L 9191963 9191997 10 87 4.0 3.0 3.5 2.2 124 chr3L 9191873 intergenic not near genes chr3L 9191935 intergenic not near genes chr3L 9191997 intergenic not near genes chr3L_10_9190001 chr3L_9190001 RAL-381 1088 chr3L 9219243 9219277 chr3L 9219915 9219948 jockey 14 671 8.0 8.5 8.2 1.5 705 chr3L 9219243 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219948 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-381 1089 chr3L 9270632 9270644 chr3L 9278387 9278399 roo 4 7755 4.5 4.5 4.5 0.7 7767 chr3L 9270632 intron GluRIB + chr3L 9274516 intron GluRIB + chr3L 9278399 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-381 1090 chr3L 9419909 9419931 chr3L 9419984 9420007 7 76 3.5 2.5 3.0 1.8 98 chr3L 9419909 intron CG3967 - chr3L 9419958 intron CG3967 - chr3L 9420007 intron CG3967 - chr3L_7_9415001 chr3L_9415001 RAL-381 1091 chr3L 9443521 9443540 chr3L 9445312 9445330 S-element 5 1790 2.5 3.0 2.8 1.3 1809 chr3L 9443521 intron CG33926 + chr3L 9444426 intron CG33926 + chr3L 9445330 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-381 1092 chr3L 9501707 9501727 chr3L 9502193 9502213 roo 4 485 1.5 4.0 2.8 1.1 506 chr3L 9501707 intron path - chr3L 9501960 intron path - chr3L 9502213 intron path - chr3L_4_9500001 chr3L_9500001 RAL-381 1093 chr3L 9524954 9524973 chr3L 9525431 9525450 8 477 3.0 8.5 5.8 1.2 496 chr3L 9524954 intron CG33700 - chr3L 9525202 intron CG33700 - chr3L 9525450 5` UTR CG33700 - chr3L_8_9525001 chr3L_9525001 RAL-381 1094 chr3L 9532485 9532511 chr3L 9532581 9532607 8 96 1.0 3.0 2.0 2.7 122 chr3L 9532485 intergenic not near genes chr3L 9532546 intergenic not near genes chr3L 9532607 intergenic not near genes chr3L_8_9530001 chr3L_9530001 RAL-381 1095 chr3L 9559390 9559409 chr3L 9559510 9559543 6 131 4.0 3.0 3.5 1.3 153 chr3L 9559390 intron CG42673 + chr3L 9559466 intron CG42673 + chr3L 9559543 intron CG42673 + chr3L_6_9555001 chr3L_9555001 RAL-381 1096 chr3L 9561350 9561361 chr3L 9561428 9561439 4 78 2.5 2.5 2.5 1.1 89 chr3L 9561350 intron CG42673 + chr3L 9561394 intron CG42673 + chr3L 9561439 intron CG42673 + chr3L_4_9560001 chr3L_9560001 RAL-381 1097 chr3L 9571900 9571936 chr3L 9572248 9572284 jockey 5 344 2.0 2.0 2.0 1.7 384 chr3L 9571900 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572284 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-381 1098 chr3L 9575908 9575949 chr3L 9580986 9581003 jockey 16 5075 7.5 3.5 5.5 2.5 5095 chr3L 9575908 intron CG42673 + chr3L 9578456 intron CG42673 + chr3L 9581003 intron CG42673 + chr3L_16_9575001 chr3L_9575001 RAL-381 1099 chr3L 9657955 9657981 chr3L 9658032 9658058 13 77 4.5 2.5 3.5 2.9 103 chr3L 9657955 intron,intron fry -,CG33696 + chr3L 9658006 intron,intron fry -,CG33696 + chr3L 9658058 intron,intron fry -,CG33696 + chr3L_13_9655001 chr3L_9655001 RAL-381 1100 chr3L 9741625 9741651 chr3L 9741717 9741743 4 92 3.0 2.0 2.5 1.1 118 chr3L 9741625 intron,intron CG42268 -,CR44348 + chr3L 9741684 intron,intron CG42268 -,CR44348 + chr3L 9741743 intron,intron CG42268 -,CR44348 + chr3L_4_9740001 chr3L_9740001 RAL-381 1101 chr3L 9775383 9775395 chr3L 9775743 9775755 5 360 0.0 5.5 2.8 1.3 372 chr3L 9775383 intron CG8177 + chr3L 9775569 intron CG8177 + chr3L 9775755 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-381 1102 chr3L 9907876 9907884 chr3L 9907953 9907961 5 77 10.5 5.5 8.0 0.6 85 chr3L 9907876 intergenic CG34356 + chr3L 9907918 intergenic CG34356 + chr3L 9907961 intergenic CG34356 + chr3L_5_9905001 chr3L_9905001 RAL-381 1103 chr3L 9918888 9918912 chr3L 9918974 9919007 8 92 6.0 5.5 5.8 1.2 119 chr3L 9918888 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919007 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-381 1104 chr3L 9929667 9929699 chr3L 9938446 9938478 roo 8 8779 2.5 2.5 2.5 2.3 8811 chr3L 9929667 intron CG34356 + chr3L 9934072 intron CG34356 + chr3L 9938478 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-381 1105 chr3L 9990495 9990527 chr3L 9990599 9990627 8 100 1.5 2.0 1.8 2.9 132 chr3L 9990495 intron dpr6 + chr3L 9990561 intron dpr6 + chr3L 9990627 intron dpr6 + chr3L_8_9990001 chr3L_9990001 RAL-381 1106 chr3L 10003158 10003181 chr3L 10003255 10003278 9 97 4.0 5.5 4.8 1.6 120 chr3L 10003158 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_9_10000001 chr3L_10000001 RAL-381 1107 chr3L 10007193 10007202 chr3L 10007296 10007305 5 103 3.0 2.5 2.8 1.3 112 chr3L 10007193 intron dpr6 + chr3L 10007249 intron dpr6 + chr3L 10007305 intron dpr6 + chr3L_5_10005001 chr3L_10005001 RAL-381 1108 chr3L 10161431 10161460 chr3L 10161510 10161519 10 77 0.0 3.5 1.8 3.6 88 chr3L 10161431 intron dpr10 - chr3L 10161475 intron dpr10 - chr3L 10161519 intron dpr10 - chr3L_10_10160001 chr3L_10160001 RAL-381 1109 chr3L 10182416 10182449 chr3L 10183167 10183199 8 751 5.0 0.0 2.5 2.3 783 chr3L 10182416 5` UTR dpr10 - chr3L 10182808 intron dpr10 - chr3L 10183199 intron dpr10 - chr3L_8_10180001 chr3L_10180001 RAL-381 1110 chr3L 10214729 10214831 chr3L 10214816 10214933 9 94 0.0 0.5 0.2 7.5 204 chr3L 10214729 intergenic not near genes chr3L 10214831 intergenic not near genes chr3L 10214933 intergenic not near genes chr3L_9_10210001 chr3L_10210001 RAL-381 1111 chr3L 10222747 10222774 chr3L 10222827 10222853 4 80 0.0 3.5 1.8 1.4 106 chr3L 10222747 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222853 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-381 1112 chr3L 10297118 10297154 chr3L 10297225 10297261 14 106 2.5 3.0 2.8 3.7 143 chr3L 10297118 intergenic not near genes chr3L 10297190 intergenic not near genes chr3L 10297261 intergenic not near genes chr3L_14_10295001 chr3L_10295001 RAL-381 1113 chr3L 10308738 10308772 chr3L 10308815 10308849 15 75 4.5 5.5 5.0 2.5 111 chr3L 10308738 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_15_10305001 chr3L_10305001 RAL-381 1114 chr3L 10348653 10348675 chr3L 10348770 10348792 9 116 2.0 0.0 1.0 4.5 139 chr3L 10348653 intron CR44327 + chr3L 10348722 intron CR44327 + chr3L 10348792 intron CR44327 + chr3L_9_10345001 chr3L_10345001 RAL-381 1115 chr3L 10381319 10381341 chr3L 10381398 10381420 9 77 7.0 0.0 3.5 2.0 101 chr3L 10381319 intergenic not near genes chr3L 10381370 intergenic not near genes chr3L 10381420 intergenic not near genes chr3L_9_10380001 chr3L_10380001 RAL-381 1116 chr3L 10381720 10381743 chr3L 10381804 10381829 5 84 2.0 5.0 3.5 1.1 109 chr3L 10381720 intergenic not near genes chr3L 10381774 intergenic not near genes chr3L 10381829 intergenic not near genes chr3L_5_10380001 chr3L_10380001 RAL-381 1117 chr3L 10414942 10414976 chr3L 10417314 10417347 Doc 13 2372 0.5 2.0 1.2 5.9 2405 chr3L 10414942 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_13_10415001 chr3L_10415001 RAL-381 1118 chr3L 10417590 10417602 chr3L 10417652 10417674 4 72 3.0 7.0 5.0 0.7 84 chr3L 10417590 intergenic not near genes chr3L 10417632 intergenic not near genes chr3L 10417674 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-381 1119 chr3L 10514309 10514340 chr3L 10514389 10514420 6 76 0.0 4.5 2.2 1.9 111 chr3L 10514309 intron A2bp1 + chr3L 10514364 intron A2bp1 + chr3L 10514420 intron A2bp1 + chr3L_6_10510001 chr3L_10510001 RAL-381 1120 chr3L 10600455 10600467 chr3L 10600537 10600549 9 82 6.0 4.5 5.2 1.5 94 chr3L 10600455 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_9_10600001 chr3L_10600001 RAL-381 1121 chr3L 10614784 10614797 chr3L 10614863 10614872 4 78 0.5 3.0 1.8 1.4 88 chr3L 10614784 intergenic not near genes chr3L 10614828 intergenic not near genes chr3L 10614872 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-381 1122 chr3L 10617288 10617314 chr3L 10617713 10617739 8 425 16.5 9.0 12.8 0.6 451 chr3L 10617288 intergenic not near genes chr3L 10617514 intergenic not near genes chr3L 10617739 intergenic not near genes chr3L_8_10615001 chr3L_10615001 RAL-381 1123 chr3L 10621856 10621862 chr3L 10621938 10621946 5 85 2.0 6.0 4.0 1.0 90 chr3L 10621856 intergenic not near genes chr3L 10621901 intergenic not near genes chr3L 10621946 intergenic not near genes chr3L_5_10620001 chr3L_10620001 RAL-381 1124 chr3L 10621866 10621880 chr3L 10621933 10621967 9 84 2.0 5.0 3.5 2.0 101 chr3L 10621866 intergenic not near genes chr3L 10621916 intergenic not near genes chr3L 10621967 intergenic not near genes chr3L_9_10620001 chr3L_10620001 RAL-381 1125 chr3L 10658077 10658209 chr3L 10658154 10658335 11 104 1.0 1.0 1.0 5.5 258 chr3L 10658077 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658335 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-381 1126 chr3L 10658968 10658994 chr3L 10659248 10659274 8 281 8.5 0.5 4.5 1.5 306 chr3L 10658968 intron CG32066 - chr3L 10659121 intron CG32066 - chr3L 10659274 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-381 1127 chr3L 10673707 10673736 chr3L 10673880 10673909 4 173 2.0 6.0 4.0 0.8 202 chr3L 10673707 intron simj + chr3L 10673808 intron simj + chr3L 10673909 intron simj + chr3L_4_10670001 chr3L_10670001 RAL-381 1128 chr3L 10746363 10746383 chr3L 10746433 10746446 5 77 2.5 2.5 2.5 1.4 83 chr3L 10746363 intergenic not near genes chr3L 10746404 intergenic not near genes chr3L 10746446 intergenic not near genes chr3L_5_10745001 chr3L_10745001 RAL-381 1129 chr3L 10956450 10956467 chr3L 10956568 10956585 5 118 2.0 7.5 4.8 0.9 135 chr3L 10956450 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956585 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-381 1130 chr3L 10958221 10958239 chr3L 10958292 10958321 6 78 0.0 0.5 0.2 5.0 100 chr3L 10958221 intergenic not near genes chr3L 10958271 intergenic not near genes chr3L 10958321 intergenic not near genes chr3L_6_10955001 chr3L_10955001 RAL-381 1131 chr3L 11083506 11083539 chr3L 11083604 11083637 6 98 0.5 2.0 1.2 2.7 131 chr3L 11083506 intron JIL-1 - chr3L 11083572 intron JIL-1 - chr3L 11083637 intron JIL-1 - chr3L_6_11080001 chr3L_11080001 RAL-381 1132 chr3L 11085688 11085702 chr3L 11085770 11085785 5 83 1.5 2.0 1.8 1.8 97 chr3L 11085688 exon JIL-1 - chr3L 11085736 intron JIL-1 - chr3L 11085785 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-381 1133 chr3L 11087057 11087087 chr3L 11088846 11088860 S-element 14 1786 0.0 3.0 1.5 5.6 1803 chr3L 11087057 intron JIL-1 - chr3L 11087958 intron JIL-1 - chr3L 11088860 intron JIL-1 - chr3L_14_11085001 chr3L_11085001 RAL-381 1134 chr3L 11100905 11100909 chr3L 11102246 11102260 4 1348 21.0 12.5 16.8 0.2 1355 chr3L 11100905 exon Elo68beta - chr3L 11101582 exon Elo68beta - chr3L 11102260 exon Elo68alpha - chr3L_4_11100001 chr3L_11100001 RAL-381 1135 chr3L 11105293 11105327 chr3L 11107004 11107038 X-element 8 1709 3.0 2.5 2.8 2.1 1745 chr3L 11105293 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_8_11105001 chr3L_11105001 RAL-381 1136 chr3L 11145540 11145556 chr3L 11145630 11145646 7 89 0.0 3.0 1.5 2.8 106 chr3L 11145540 intron CG32082 + chr3L 11145593 intron CG32082 + chr3L 11145646 intron CG32082 + chr3L_7_11145001 chr3L_11145001 RAL-381 1137 chr3L 11250578 11250605 chr3L 11250669 11250696 9 91 2.0 1.5 1.8 3.2 118 chr3L 11250578 5` UTR,3` UTR CR44717 +,CR44716 - chr3L 11250637 5` UTR,3` UTR CR44717 +,CR44716 - chr3L 11250696 5` UTR,3` UTR CR44717 +,CR44716 - chr3L_9_11250001 chr3L_11250001 RAL-381 1138 chr3L 11264463 11264495 chr3L 11271415 11271447 17.6 9 6952 5.0 1.5 3.2 2.1 6984 chr3L 11264463 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271447 intergenic not near genes chr3L_9_11265001 chr3L_11265001 RAL-381 1139 chr3L 11290629 11290655 chr3L 11290952 11290978 8 322 2.0 4.5 3.2 1.9 349 chr3L 11290629 intron CG6175 - chr3L 11290804 intron CG6175 - chr3L 11290978 intron CG6175 - chr3L_8_11290001 chr3L_11290001 RAL-381 1140 chr3L 11329697 11329722 chr3L 11332902 11332927 jockey 5 3204 7.5 8.0 7.8 0.6 3230 chr3L 11329697 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332927 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-381 1141 chr3L 11329724 11329728 chr3L 11332899 11332933 jockey 5 3197 6.0 8.0 7.0 0.6 3209 chr3L 11329724 intergenic not near genes chr3L 11331328 intergenic not near genes chr3L 11332933 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-381 1142 chr3L 11383962 11383988 chr3L 11384041 11384067 7 77 6.5 3.5 5.0 1.2 105 chr3L 11383962 intron CR42755 - chr3L 11384014 3` UTR CR42755 - chr3L 11384067 3` UTR CR42755 - chr3L_7_11380001 chr3L_11380001 RAL-381 1143 chr3L 11564796 11564813 chr3L 11572405 11572414 412 5 7610 6.0 6.5 6.2 0.7 7618 chr3L 11564796 exon CG33267 + chr3L 11568605 intron CG33267 + chr3L 11572414 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-381 1144 chr3L 11579556 11579581 chr3L 11579662 11579687 10 106 3.0 2.5 2.8 2.6 131 chr3L 11579556 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579687 intergenic CG43390 - chr3L_10_11575001 chr3L_11575001 RAL-381 1145 chr3L 11580297 11580313 chr3L 11580767 11580783 5 470 0.0 2.5 1.2 2.3 486 chr3L 11580297 intergenic CG43390 - chr3L 11580540 intergenic CG43391 - chr3L 11580783 intergenic CG43391 - chr3L_5_11580001 chr3L_11580001 RAL-381 1146 chr3L 11673975 11673990 chr3L 11674051 11674066 5 76 4.0 0.0 2.0 1.7 91 chr3L 11673975 intron CG32085 - chr3L 11674020 intron CG32085 - chr3L 11674066 intron CG32085 - chr3L_5_11670001 chr3L_11670001 RAL-381 1147 chr3L 11678097 11678123 chr3L 11678181 11678209 8 86 1.5 3.5 2.5 2.3 112 chr3L 11678097 intron CG32085 - chr3L 11678153 intron CG32085 - chr3L 11678209 intron CG32085 - chr3L_8_11675001 chr3L_11675001 RAL-381 1148 chr3L 11714501 11714505 chr3L 11714578 11714592 5 83 4.0 0.5 2.2 1.6 91 chr3L 11714501 intron CG14132 - chr3L 11714546 intron CG14132 - chr3L 11714592 intron CG14132 - chr3L_5_11710001 chr3L_11710001 RAL-381 1149 chr3L 11723082 11723116 chr3L 11727877 11727911 Doc 12 4795 4.0 1.5 2.8 3.2 4829 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-381 1150 chr3L 11744013 11744038 chr3L 11744120 11744146 9 108 4.5 0.0 2.2 2.8 133 chr3L 11744013 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-381 1151 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 9.5 27.5 18.5 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-381 1152 chr3L 11864554 11864582 chr3L 11865849 11865877 pogo 10 1294 8.0 5.0 6.5 1.3 1323 chr3L 11864554 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-381 1153 chr3L 11887259 11887286 chr3L 11887356 11887387 5 97 0.5 1.5 1.0 2.5 128 chr3L 11887259 intron,3` UTR CG44837 -,CG5897 - chr3L 11887323 intron,3` UTR CG44837 -,CG5897 - chr3L 11887387 intron,3` UTR CG44837 -,CG5897 - chr3L_5_11885001 chr3L_11885001 RAL-381 1154 chr3L 11902485 11902508 chr3L 11902550 11902584 8 75 3.0 5.5 4.2 1.5 99 chr3L 11902485 intron CG44837 - chr3L 11902534 intron CG44837 - chr3L 11902584 intron CG44837 - chr3L_8_11900001 chr3L_11900001 RAL-381 1155 chr3L 11943496 11943518 chr3L 11943597 11943619 7 101 1.0 3.0 2.0 2.3 123 chr3L 11943496 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_7_11940001 chr3L_11940001 RAL-381 1156 chr3L 11961206 11961215 chr3L 11961296 11961313 5 99 5.0 5.5 5.2 0.8 107 chr3L 11961206 exon prc - chr3L 11961260 exon prc - chr3L 11961313 exon prc - chr3L_5_11960001 chr3L_11960001 RAL-381 1157 chr3L 11961220 11961233 chr3L 11961293 11961300 6 78 2.0 4.5 3.2 1.4 80 chr3L 11961220 exon prc - chr3L 11961260 exon prc - chr3L 11961300 exon prc - chr3L_6_11960001 chr3L_11960001 RAL-381 1158 chr3L 12019324 12019351 chr3L 12019437 12019463 10 112 0.5 3.0 1.8 3.6 139 chr3L 12019324 intron rols - chr3L 12019394 intron rols - chr3L 12019463 intron rols - chr3L_10_12015001 chr3L_12015001 RAL-381 1159 chr3L 12039635 12039659 chr3L 12039722 12039729 6 85 0.5 2.5 1.5 2.4 94 chr3L 12039635 intron rols - chr3L 12039682 intron rols - chr3L 12039729 intron rols - chr3L_6_12035001 chr3L_12035001 RAL-381 1160 chr3L 12052704 12052738 chr3L 12052793 12052827 12 88 2.0 4.5 3.2 2.9 123 chr3L 12052704 intron rols - chr3L 12052766 intron rols - chr3L 12052827 intron rols - chr3L_12_12050001 chr3L_12050001 RAL-381 1161 chr3L 12089084 12089112 chr3L 12089164 12089192 7 76 2.0 6.0 4.0 1.4 108 chr3L 12089084 3` UTR CG17154 + chr3L 12089138 3` UTR CG17154 + chr3L 12089192 3` UTR CG17154 + chr3L_7_12085001 chr3L_12085001 RAL-381 1162 chr3L 12106703 12106720 chr3L 12106892 12106909 6 189 5.0 3.0 4.0 1.2 206 chr3L 12106703 intergenic not near genes chr3L 12106806 intergenic not near genes chr3L 12106909 intergenic not near genes chr3L_6_12105001 chr3L_12105001 RAL-381 1163 chr3L 12170811 12170823 chr3L 12170893 12170905 5 82 0.5 2.0 1.2 2.3 94 chr3L 12170811 intron Rh7 - chr3L 12170858 intron Rh7 - chr3L 12170905 intron Rh7 - chr3L_5_12170001 chr3L_12170001 RAL-381 1164 chr3L 12273119 12273130 chr3L 12273406 12273407 4 284 6.0 2.5 4.2 0.8 288 chr3L 12273119 intron CG4300 - chr3L 12273263 intron CG4300 - chr3L 12273407 intron CG4300 - chr3L_4_12270001 chr3L_12270001 RAL-381 1165 chr3L 12317422 12317447 chr3L 12317523 12317548 10 98 3.5 3.0 3.2 2.4 126 chr3L 12317422 intergenic not near genes chr3L 12317485 intergenic not near genes chr3L 12317548 intergenic not near genes chr3L_10_12315001 chr3L_12315001 RAL-381 1166 chr3L 12362600 12362628 chr3L 12362730 12362758 12 129 3.0 3.5 3.2 2.9 158 chr3L 12362600 intergenic not near genes chr3L 12362679 intergenic not near genes chr3L 12362758 intergenic not near genes chr3L_12_12360001 chr3L_12360001 RAL-381 1167 chr3L 12369534 12369566 chr3L 12369624 12369653 5 89 2.0 0.0 1.0 2.5 119 chr3L 12369534 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369653 intron Ncc69 - chr3L_5_12365001 chr3L_12365001 RAL-381 1168 chr3L 12434908 12434916 chr3L 12435062 12435084 5 166 6.5 1.0 3.8 1.0 176 chr3L 12434908 intergenic not near genes chr3L 12434996 intergenic not near genes chr3L 12435084 intergenic not near genes chr3L_5_12430001 chr3L_12430001 RAL-381 1169 chr3L 12460330 12460340 chr3L 12460407 12460417 4 77 0.0 3.5 1.8 1.4 87 chr3L 12460330 intergenic not near genes chr3L 12460374 intergenic not near genes chr3L 12460417 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-381 1170 chr3L 12591633 12591642 chr3L 12591710 12591719 4 76 4.5 7.0 5.8 0.6 86 chr3L 12591633 intron ara + chr3L 12591676 intron ara + chr3L 12591719 intron ara + chr3L_4_12590001 chr3L_12590001 RAL-381 1171 chr3L 12801988 12802011 chr3L 12802058 12802081 7 74 6.0 3.5 4.8 1.2 93 chr3L 12801988 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802081 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-381 1172 chr3L 12815144 12815173 chr3L 12815229 12815257 4 85 1.5 1.5 1.5 1.6 113 chr3L 12815144 intron CG42588 + chr3L 12815200 intron CG42588 + chr3L 12815257 intron CG42588 + chr3L_4_12815001 chr3L_12815001 RAL-381 1173 chr3L 12868029 12868058 chr3L 12868115 12868144 11 84 3.0 1.5 2.2 3.4 115 chr3L 12868029 intergenic not near genes chr3L 12868086 intergenic not near genes chr3L 12868144 intergenic not near genes chr3L_11_12865001 chr3L_12865001 RAL-381 1174 chr3L 12874949 12874958 chr3L 12877225 12877250 jockey 5 2288 3.5 2.5 3.0 1.2 2301 chr3L 12874949 intergenic not near genes chr3L 12876100 intergenic not near genes chr3L 12877250 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-381 1175 chr3L 12894804 12894814 chr3L 12894882 12894892 4 78 6.0 10.0 8.0 0.4 88 chr3L 12894804 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894892 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-381 1176 chr3L 12919284 12919287 chr3L 12924750 12924760 Rt1c 4 5470 7.0 4.5 5.8 0.6 5476 chr3L 12919284 intergenic not near genes chr3L 12922022 intergenic not near genes chr3L 12924760 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-381 1177 chr3L 12919301 12919309 chr3L 12924739 12924769 Rt1c 7 5460 2.5 4.5 3.5 1.6 5468 chr3L 12919301 intergenic not near genes chr3L 12922035 intergenic not near genes chr3L 12924769 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-381 1178 chr3L 12938730 12938757 chr3L 12939080 12939107 8 350 8.5 20.0 14.2 0.5 377 chr3L 12938730 intergenic not near genes chr3L 12938918 intergenic not near genes chr3L 12939107 intergenic not near genes chr3L_8_12935001 chr3L_12935001 RAL-381 1179 chr3L 12957785 12957817 chr3L 12962267 12962299 copia 12 4480 2.0 4.5 3.2 2.9 4514 chr3L 12957785 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_12_12960001 chr3L_12960001 RAL-381 1180 chr3L 12968176 12968205 chr3L 12968261 12968269 9 81 6.0 7.5 6.8 1.2 93 chr3L 12968176 intergenic Or69a - chr3L 12968222 intergenic Or69a - chr3L 12968269 intergenic not near genes chr3L_9_12965001 chr3L_12965001 RAL-381 1181 chr3L 12970995 12971017 chr3L 12971078 12971100 4 83 2.0 2.0 2.0 1.3 105 chr3L 12970995 intergenic CG10748 - chr3L 12971048 intergenic CG10748 - chr3L 12971100 intergenic CG10748 - chr3L_4_12970001 chr3L_12970001 RAL-381 1182 chr3L 12975730 12975754 chr3L 12975812 12975834 4 78 2.5 2.5 2.5 1.1 104 chr3L 12975730 intergenic not near genes chr3L 12975782 intergenic not near genes chr3L 12975834 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-381 1183 chr3L 12979898 12979915 chr3L 12979983 12980000 4 85 8.0 4.0 6.0 0.6 102 chr3L 12979898 intergenic not near genes chr3L 12979949 intergenic not near genes chr3L 12980000 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-381 1184 chr3L 12979916 12979926 chr3L 12979980 12979981 4 72 6.5 3.5 5.0 0.7 65 chr3L 12979916 intergenic not near genes chr3L 12979948 intergenic not near genes chr3L 12979981 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-381 1185 chr3L 13008819 13008823 chr3L 13008975 13008982 5 158 2.5 12.0 7.2 0.6 163 chr3L 13008819 exon CG14117 + chr3L 13008900 intron CG14117 + chr3L 13008982 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-381 1186 chr3L 13069559 13069588 chr3L 13069638 13069667 10 79 0.5 1.5 1.0 5.0 108 chr3L 13069559 intergenic not near genes chr3L 13069613 intergenic not near genes chr3L 13069667 intergenic not near genes chr3L_10_13065001 chr3L_13065001 RAL-381 1187 chr3L 13074041 13074070 chr3L 13074174 13074203 9 128 4.0 8.5 6.2 1.2 162 chr3L 13074041 intergenic not near genes chr3L 13074122 intergenic not near genes chr3L 13074203 intergenic not near genes chr3L_9_13070001 chr3L_13070001 RAL-381 1188 chr3L 13137933 13137966 chr3L 13138021 13138054 7 84 2.5 3.0 2.8 1.8 121 chr3L 13137933 intergenic not near genes chr3L 13137994 intergenic not near genes chr3L 13138054 intergenic not near genes chr3L_7_13135001 chr3L_13135001 RAL-381 1189 chr3L 13159291 13159296 chr3L 13159370 13159375 4 79 3.5 1.5 2.5 1.1 84 chr3L 13159291 intergenic not near genes chr3L 13159333 intergenic not near genes chr3L 13159375 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-381 1190 chr3L 13178287 13178309 chr3L 13178383 13178405 6 95 7.0 0.0 3.5 1.3 118 chr3L 13178287 intergenic not near genes chr3L 13178346 intergenic not near genes chr3L 13178405 intergenic not near genes chr3L_6_13175001 chr3L_13175001 RAL-381 1191 chr3L 13194067 13194100 chr3L 13194146 13194179 10 77 2.0 2.0 2.0 3.3 112 chr3L 13194067 intergenic not near genes chr3L 13194123 intergenic not near genes chr3L 13194179 intergenic not near genes chr3L_10_13190001 chr3L_13190001 RAL-381 1192 chr3L 13206235 13206260 chr3L 13206317 13206342 8 82 4.5 2.0 3.2 1.9 107 chr3L 13206235 intergenic not near genes chr3L 13206288 intergenic not near genes chr3L 13206342 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-381 1193 chr3L 13214710 13214717 chr3L 13214787 13214791 4 77 10.0 1.0 5.5 0.6 81 chr3L 13214710 intergenic not near genes chr3L 13214750 intergenic not near genes chr3L 13214791 intergenic CR45097 - chr3L_4_13210001 chr3L_13210001 RAL-381 1194 chr3L 13265185 13265217 chr3L 13265263 13265295 16 78 2.5 4.5 3.5 3.6 110 chr3L 13265185 5` UTR caps + chr3L 13265240 5` UTR caps + chr3L 13265295 5` UTR caps + chr3L_16_13265001 chr3L_13265001 RAL-381 1195 chr3L 13296528 13296535 chr3L 13296619 13296626 5 91 4.5 5.0 4.8 0.9 98 chr3L 13296528 intergenic Sfp70A4 -,CR45253 + chr3L 13296577 3` UTR Sfp70A4 - chr3L 13296626 3` UTR Sfp70A4 - chr3L_5_13295001 chr3L_13295001 RAL-381 1196 chr3L 13342973 13342994 chr3L 13343065 13343085 5 92 3.0 4.5 3.8 1.0 112 chr3L 13342973 intergenic not near genes chr3L 13343029 intergenic not near genes chr3L 13343085 intergenic CR44559 - chr3L_5_13340001 chr3L_13340001 RAL-381 1197 chr3L 13477017 13477035 chr3L 13477094 13477112 5 76 0.0 3.0 1.5 2.0 95 chr3L 13477017 intergenic not near genes chr3L 13477064 intergenic stv + chr3L 13477112 intergenic stv + chr3L_5_13475001 chr3L_13475001 RAL-381 1198 chr3L 13491799 13491835 chr3L 13491906 13491942 19 106 4.0 4.0 4.0 3.8 143 chr3L 13491799 intron Tgi + chr3L 13491870 intron Tgi + chr3L 13491942 intron Tgi + chr3L_19_13490001 chr3L_13490001 RAL-381 1199 chr3L 13525154 13525190 chr3L 13532950 13532986 roo 14 7794 4.5 5.0 4.8 2.4 7832 chr3L 13525154 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_14_13525001 chr3L_13525001 RAL-381 1200 chr3L 13535898 13535936 chr3L 13535974 13536012 5 74 4.5 2.0 3.2 1.2 114 chr3L 13535898 intergenic not near genes chr3L 13535955 intergenic not near genes chr3L 13536012 intergenic not near genes chr3L_5_13535001 chr3L_13535001 RAL-381 1201 chr3L 13643898 13643927 chr3L 13643972 13644004 11 75 2.0 2.0 2.0 3.7 106 chr3L 13643898 intron bru-3 - chr3L 13643951 intron bru-3 - chr3L 13644004 intron bru-3 - chr3L_11_13640001 chr3L_13640001 RAL-381 1202 chr3L 13677530 13677560 chr3L 13677607 13677637 5 77 1.0 0.5 0.8 2.8 107 chr3L 13677530 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677637 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-381 1203 chr3L 13740032 13740051 chr3L 13740124 13740138 9 90 2.5 2.5 2.5 2.6 106 chr3L 13740032 intron bru-3 - chr3L 13740085 intron bru-3 - chr3L 13740138 intron bru-3 - chr3L_9_13740001 chr3L_13740001 RAL-381 1204 chr3L 13862475 13862505 chr3L 13862681 13862712 9 206 0.5 4.5 2.5 2.6 237 chr3L 13862475 intron CG8745 - chr3L 13862594 intron CG8745 - chr3L 13862712 intron CG8745 - chr3L_9_13860001 chr3L_13860001 RAL-381 1205 chr3L 13876998 13877012 chr3L 13877080 13877094 5 78 0.5 2.5 1.5 2.0 96 chr3L 13876998 intron dysc - chr3L 13877046 intron dysc - chr3L 13877094 intron dysc - chr3L_5_13875001 chr3L_13875001 RAL-381 1206 chr3L 13988471 13988503 chr3L 13988592 13988624 11 120 1.0 1.5 1.2 5.0 153 chr3L 13988471 intron,3` UTR CG17364 -,CG9040 + chr3L 13988548 intron,3` UTR CG17364 -,CG9040 + chr3L 13988624 intron,3` UTR CG17364 -,CG9040 + chr3L_11_13985001 chr3L_13985001 RAL-381 1207 chr3L 14076292 14076321 chr3L 14076370 14076399 6 78 0.0 2.5 1.2 2.7 107 chr3L 14076292 intron btl + chr3L 14076346 intron btl + chr3L 14076399 intron btl + chr3L_6_14075001 chr3L_14075001 RAL-381 1208 chr3L 14132005 14132028 chr3L 14132085 14132110 4 81 6.0 4.5 5.2 0.6 105 chr3L 14132005 intergenic not near genes chr3L 14132058 intergenic not near genes chr3L 14132110 intergenic not near genes chr3L_4_14130001 chr3L_14130001 RAL-381 1209 chr3L 14180733 14180766 chr3L 14180809 14180842 10 76 3.0 6.0 4.5 1.8 109 chr3L 14180733 intergenic not near genes chr3L 14180788 intergenic not near genes chr3L 14180842 intergenic not near genes chr3L_10_14180001 chr3L_14180001 RAL-381 1210 chr3L 14245585 14245589 chr3L 14245669 14245683 1360 6 92 7.5 2.5 5.0 1.0 98 chr3L 14245585 3` UTR CR44561 - chr3L 14245634 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-381 1211 chr3L 14267364 14267383 chr3L 14271805 14271824 F-element 5 4441 5.0 3.0 4.0 1.0 4460 chr3L 14267364 intergenic not near genes chr3L 14269594 intergenic not near genes chr3L 14271824 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-381 1212 chr3L 14295996 14296016 chr3L 14296467 14296502 roo 7 483 0.5 3.0 1.8 2.5 506 chr3L 14295996 intron fz + chr3L 14296249 intron fz + chr3L 14296502 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-381 1213 chr3L 14302989 14303009 chr3L 14303074 14303094 12 84 3.5 0.5 2.0 4.0 105 chr3L 14302989 intron fz + chr3L 14303042 intron fz + chr3L 14303094 intron fz + chr3L_12_14300001 chr3L_14300001 RAL-381 1214 chr3L 14312041 14312057 chr3L 14316838 14316859 X-element 4 4806 2.0 2.5 2.2 1.2 4818 chr3L 14312041 exon fz + chr3L 14314450 intron fz + chr3L 14316859 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-381 1215 chr3L 14356518 14356550 chr3L 14356598 14356630 14 80 3.5 6.5 5.0 2.3 112 chr3L 14356518 intron fz + chr3L 14356574 intron fz + chr3L 14356630 intron fz + chr3L_14_14355001 chr3L_14355001 RAL-381 1216 chr3L 14399184 14399191 chr3L 14399273 14399278 5 89 4.0 0.0 2.0 1.7 94 chr3L 14399184 intergenic not near genes chr3L 14399231 intergenic not near genes chr3L 14399278 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-381 1217 chr3L 14443629 14443656 chr3L 14443818 14443844 9 188 3.5 2.5 3.0 2.2 215 chr3L 14443629 intron bbg - chr3L 14443736 intron bbg - chr3L 14443844 intron bbg - chr3L_9_14440001 chr3L_14440001 RAL-381 1218 chr3L 14445746 14445753 chr3L 14445901 14445934 5 170 3.0 3.5 3.2 1.2 188 chr3L 14445746 intron bbg - chr3L 14445840 intron bbg - chr3L 14445934 intron bbg - chr3L_5_14445001 chr3L_14445001 RAL-381 1219 chr3L 14462886 14462910 chr3L 14462974 14462995 4 86 0.0 1.5 0.8 2.2 109 chr3L 14462886 intron bbg - chr3L 14462940 intron bbg - chr3L 14462995 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-381 1220 chr3L 14487617 14487652 chr3L 14487693 14487702 4 70 3.0 0.0 1.5 1.6 85 chr3L 14487617 intron bbg - chr3L 14487660 intron bbg - chr3L 14487702 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-381 1221 chr3L 14522113 14522124 chr3L 14522204 14522223 4 96 1.0 1.5 1.2 1.8 110 chr3L 14522113 intron bbg - chr3L 14522168 intron bbg - chr3L 14522223 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-381 1222 chr3L 14633788 14633817 chr3L 14633883 14633912 8 96 1.0 1.0 1.0 4.0 124 chr3L 14633788 intron dlp + chr3L 14633850 intron dlp + chr3L 14633912 intron dlp + chr3L_8_14630001 chr3L_14630001 RAL-381 1223 chr3L 14721184 14721206 chr3L 14723026 14723046 Rt1c 7 1839 2.5 5.5 4.0 1.4 1862 chr3L 14721184 intron ome + chr3L 14722115 intron ome + chr3L 14723046 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-381 1224 chr3L 14725599 14725627 chr3L 14728593 14728621 Doc 9 2994 1.0 2.5 1.8 3.2 3022 chr3L 14725599 intron ome + chr3L 14727110 intron ome + chr3L 14728621 intron ome + chr3L_9_14725001 chr3L_14725001 RAL-381 1225 chr3L 14741144 14741166 chr3L 14741220 14741244 6 77 3.0 3.5 3.2 1.4 100 chr3L 14741144 intron ome + chr3L 14741194 intron ome + chr3L 14741244 intron ome + chr3L_6_14740001 chr3L_14740001 RAL-381 1226 chr3L 14839038 14839050 chr3L 14839127 14839139 4 89 1.0 2.5 1.8 1.4 101 chr3L 14839038 intron CG17839 + chr3L 14839088 intron CG17839 + chr3L 14839139 intron CG17839 + chr3L_4_14835001 chr3L_14835001 RAL-381 1227 chr3L 14861803 14861833 chr3L 14861883 14861913 14 79 0.0 3.5 1.8 5.0 110 chr3L 14861803 intron CG17839 + chr3L 14861858 intron CG17839 + chr3L 14861913 intron CG17839 + chr3L_14_14860001 chr3L_14860001 RAL-381 1228 chr3L 15151212 15151243 chr3L 15151395 15151427 5 184 2.5 2.0 2.2 1.6 215 chr3L 15151212 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151427 intron FucTA + chr3L_5_15150001 chr3L_15150001 RAL-381 1229 chr3L 15166969 15166999 chr3L 15167056 15167087 13 87 4.0 5.0 4.5 2.4 118 chr3L 15166969 intergenic not near genes chr3L 15167028 intergenic not near genes chr3L 15167087 intergenic not near genes chr3L_13_15165001 chr3L_15165001 RAL-381 1230 chr3L 15233552 15233582 chr3L 15233633 15233663 8 81 0.0 0.0 0.0 8.0 111 chr3L 15233552 intergenic not near genes chr3L 15233608 intergenic not near genes chr3L 15233663 intergenic not near genes chr3L_8_15230001 chr3L_15230001 RAL-381 1231 chr3L 15423760 15423778 chr3L 15426604 15426622 opus 4 2844 3.5 3.5 3.5 0.9 2862 chr3L 15423760 intergenic not near genes chr3L 15425191 intergenic not near genes chr3L 15426622 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-381 1232 chr3L 15443594 15443608 chr3L 15443670 15443684 4 76 1.0 1.5 1.2 1.8 90 chr3L 15443594 intergenic not near genes chr3L 15443639 intergenic not near genes chr3L 15443684 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-381 1233 chr3L 15466038 15466132 chr3L 15466120 15466228 7 93 0.0 0.0 0.0 7.0 190 chr3L 15466038 intergenic not near genes chr3L 15466133 intergenic not near genes chr3L 15466228 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-381 1234 chr3L 15541617 15541652 chr3L 15541708 15541743 6 91 3.0 1.5 2.2 1.9 126 chr3L 15541617 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541743 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-381 1235 chr3L 15633185 15633215 chr3L 15633265 15633295 6 80 0.5 0.5 0.5 4.0 110 chr3L 15633185 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633295 intron comm3 - chr3L_6_15630001 chr3L_15630001 RAL-381 1236 chr3L 15701047 15701078 chr3L 15701176 15701207 9 128 4.0 2.5 3.2 2.1 160 chr3L 15701047 intergenic not near genes chr3L 15701127 intergenic not near genes chr3L 15701207 intergenic not near genes chr3L_9_15700001 chr3L_15700001 RAL-381 1237 chr3L 15747564 15747583 chr3L 15747640 15747658 6 76 6.5 5.5 6.0 0.9 94 chr3L 15747564 5` UTR CR45240 + chr3L 15747611 5` UTR CR45240 + chr3L 15747658 5` UTR CR45240 + chr3L_6_15745001 chr3L_15745001 RAL-381 1238 chr3L 15748450 15748457 chr3L 15748535 15748542 6 85 24.5 8.0 16.2 0.3 92 chr3L 15748450 5` UTR CR45240 + chr3L 15748496 5` UTR CR45240 + chr3L 15748542 5` UTR CR45240 + chr3L_6_15745001 chr3L_15745001 RAL-381 1239 chr3L 15748465 15748489 chr3L 15748534 15748574 17 79 9.0 7.5 8.2 1.8 109 chr3L 15748465 5` UTR CR45240 + chr3L 15748520 5` UTR CR45240 + chr3L 15748574 5` UTR CR45240 + chr3L_17_15745001 chr3L_15745001 RAL-381 1240 chr3L 15740965 15740969 chr3L 15749156 15749180 10 8194 36.5 8.0 22.2 0.4 8215 chr3L 15740965 intergenic not near genes chr3L 15745072 intergenic not near genes chr3L 15749180 intergenic CR45240 + chr3L_10_15745001 chr3L_15745001 RAL-381 1241 chr3L 15946502 15946512 chr3L 15946588 15946598 6 86 5.0 0.0 2.5 1.7 96 chr3L 15946502 intron Pka-C3 - chr3L 15946550 intron Pka-C3 - chr3L 15946598 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-381 1242 chr3L 15981676 15981687 chr3L 15981762 15981773 6 86 5.0 0.5 2.8 1.6 97 chr3L 15981676 intron,3` UTR brm -,CG17027 + chr3L 15981724 intron,3` UTR brm -,CG17027 + chr3L 15981773 intron,3` UTR brm -,CG17027 + chr3L_6_15980001 chr3L_15980001 RAL-381 1243 chr3L 16015835 16015865 chr3L 16015913 16015943 6 78 4.5 1.0 2.8 1.6 108 chr3L 16015835 intergenic not near genes chr3L 16015889 intergenic not near genes chr3L 16015943 intergenic not near genes chr3L_6_16015001 chr3L_16015001 RAL-381 1244 chr3L 16099944 16099963 chr3L 16100026 16100044 9 81 1.0 3.5 2.2 2.8 100 chr3L 16099944 exon ms(3)72Dt + chr3L 16099994 3` UTR ms(3)72Dt + chr3L 16100044 3` UTR ms(3)72Dt + chr3L_9_16095001 chr3L_16095001 RAL-381 1245 chr3L 16106364 16106385 chr3L 16106547 16106568 4 183 3.0 2.0 2.5 1.1 204 chr3L 16106364 exon CG43295 + chr3L 16106466 intergenic CG43295 +,Zn72D - chr3L 16106568 intergenic Zn72D -,CG43295 + chr3L_4_16105001 chr3L_16105001 RAL-381 1246 chr3L 16162603 16162630 chr3L 16162687 16162714 12 82 2.5 4.0 3.2 2.9 111 chr3L 16162603 intron CG5151 - chr3L 16162658 intron CG5151 - chr3L 16162714 intron CG5151 - chr3L_12_16160001 chr3L_16160001 RAL-381 1247 chr3L 16184113 16184126 chr3L 16188932 16188944 X-element 7 4819 4.5 4.0 4.2 1.3 4831 chr3L 16184113 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188944 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-381 1248 chr3L 16184128 16184141 chr3L 16188930 16188959 X-element 5 4814 3.5 3.5 3.5 1.1 4831 chr3L 16184128 intergenic not near genes chr3L 16186544 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-381 1249 chr3L 16239939 16239949 chr3L 16240015 16240025 5 76 1.5 2.5 2.0 1.7 86 chr3L 16239939 intergenic l(3)72Dr + chr3L 16239982 intergenic not near genes chr3L 16240025 intergenic not near genes chr3L_5_16235001 chr3L_16235001 RAL-381 1250 chr3L 16241897 16241929 chr3L 16241981 16242013 10 83 2.5 2.0 2.2 3.1 116 chr3L 16241897 intergenic not near genes chr3L 16241955 intergenic not near genes chr3L 16242013 intergenic not near genes chr3L_10_16240001 chr3L_16240001 RAL-381 1251 chr3L 16322823 16322858 chr3L 16322913 16322948 17 90 5.0 8.0 6.5 2.3 125 chr3L 16322823 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322948 intergenic not near genes chr3L_17_16320001 chr3L_16320001 RAL-381 1252 chr3L 16336825 16336851 chr3L 16336902 16336931 7 77 5.5 5.5 5.5 1.1 106 chr3L 16336825 intergenic not near genes chr3L 16336878 intergenic not near genes chr3L 16336931 intergenic not near genes chr3L_7_16335001 chr3L_16335001 RAL-381 1253 chr3L 16360885 16360897 chr3L 16360963 16360973 6 78 8.5 2.0 5.2 1.0 88 chr3L 16360885 intron CG45057 - chr3L 16360929 intron CG45057 - chr3L 16360973 intron CG45057 - chr3L_6_16360001 chr3L_16360001 RAL-381 1254 chr3L 16360900 16360910 chr3L 16360962 16360988 7 75 5.0 2.0 3.5 1.6 88 chr3L 16360900 intron CG45057 - chr3L 16360944 intron CG45057 - chr3L 16360988 intron CG45057 - chr3L_7_16360001 chr3L_16360001 RAL-381 1255 chr3L 16443850 16443878 chr3L 16446190 16446218 Doc 12 2339 1.0 3.5 2.2 3.8 2368 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446218 intron,intron CG33158 +,dsx-c73A - chr3L_12_16445001 chr3L_16445001 RAL-381 1256 chr3L 16450023 16450053 chr3L 16450108 16450138 5 84 2.0 3.0 2.5 1.4 115 chr3L 16450023 intron,intron CG33158 +,dsx-c73A - chr3L 16450080 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_5_16450001 chr3L_16450001 RAL-381 1257 chr3L 16457534 16457555 chr3L 16457628 16457650 8 95 0.5 4.0 2.2 2.5 116 chr3L 16457534 intron CG33158 + chr3L 16457592 intron CG33158 + chr3L 16457650 intron CG33158 + chr3L_8_16455001 chr3L_16455001 RAL-381 1258 chr3L 16462737 16462765 chr3L 16462831 16462859 4 94 0.0 4.5 2.2 1.2 122 chr3L 16462737 intron CG33158 + chr3L 16462798 intron CG33158 + chr3L 16462859 intron CG33158 + chr3L_4_16460001 chr3L_16460001 RAL-381 1259 chr3L 16493980 16493993 chr3L 16494491 16494499 jockey 8 515 8.0 6.5 7.2 1.0 519 chr3L 16493980 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494240 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494499 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-381 1260 chr3L 16503625 16503658 chr3L 16503702 16503730 5 73 4.5 0.5 2.5 1.4 105 chr3L 16503625 intron CG43373 - chr3L 16503678 intron CG43373 - chr3L 16503730 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-381 1261 chr3L 16537844 16537875 chr3L 16537931 16537962 4 87 1.5 1.5 1.5 1.6 118 chr3L 16537844 intron CG43373 - chr3L 16537903 intron CG43373 - chr3L 16537962 intron CG43373 - chr3L_4_16535001 chr3L_16535001 RAL-381 1262 chr3L 16540054 16540083 chr3L 16540142 16540148 7 84 1.5 5.0 3.2 1.7 94 chr3L 16540054 intron CG43373 - chr3L 16540101 intron CG43373 - chr3L 16540148 intron CG43373 - chr3L_7_16540001 chr3L_16540001 RAL-381 1263 chr3L 16643749 16643766 chr3L 16643845 16643862 8 95 4.5 0.0 2.2 2.5 113 chr3L 16643749 intron Abl - chr3L 16643806 intron Abl - chr3L 16643862 intron Abl - chr3L_8_16640001 chr3L_16640001 RAL-381 1264 chr3L 16648531 16648566 chr3L 16648613 16648640 4 80 1.0 2.0 1.5 1.6 109 chr3L 16648531 3` UTR Baldspot - chr3L 16648586 3` UTR Baldspot - chr3L 16648640 3` UTR Baldspot - chr3L_4_16645001 chr3L_16645001 RAL-381 1265 chr3L 16694348 16694371 chr3L 16694442 16694465 5 94 7.0 5.5 6.2 0.7 117 chr3L 16694348 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694406 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694465 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L_5_16690001 chr3L_16690001 RAL-381 1266 chr3L 16772494 16772511 chr3L 16772584 16772599 6 90 4.5 4.5 4.5 1.1 105 chr3L 16772494 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772599 intron Nrt + chr3L_6_16770001 chr3L_16770001 RAL-381 1267 chr3L 16808050 16808070 chr3L 16808126 16808146 6 76 1.0 0.0 0.5 4.0 96 chr3L 16808050 intron nudC + chr3L 16808098 intron nudC + chr3L 16808146 intron nudC + chr3L_6_16805001 chr3L_16805001 RAL-381 1268 chr3L 16818748 16818775 chr3L 16818824 16818851 6 76 1.5 4.0 2.8 1.6 103 chr3L 16818748 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818851 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-381 1269 chr3L 16867546 16867567 chr3L 16867624 16867645 7 78 1.5 3.5 2.5 2.0 99 chr3L 16867546 intron Lmpt + chr3L 16867596 intron Lmpt + chr3L 16867645 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-381 1270 chr3L 16888133 16888139 chr3L 16888216 16888222 5 83 7.0 5.5 6.2 0.7 89 chr3L 16888133 intron Lmpt + chr3L 16888178 intron Lmpt + chr3L 16888222 intron Lmpt + chr3L_5_16885001 chr3L_16885001 RAL-381 1271 chr3L 16941407 16941420 chr3L 16941508 16941521 6 101 5.0 0.5 2.8 1.6 114 chr3L 16941407 intron Cpr73D - chr3L 16941464 intron Cpr73D - chr3L 16941521 intron Cpr73D - chr3L_6_16940001 chr3L_16940001 RAL-381 1272 chr3L 16945730 16945757 chr3L 16954883 16954908 roo 13 9150 5.0 4.0 4.5 2.4 9178 chr3L 16945730 exon Obp73a + chr3L 16950319 intergenic not near genes chr3L 16954908 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-381 1273 chr3L 17026789 17026824 chr3L 17026869 17026905 13 77 2.0 1.5 1.8 4.6 116 chr3L 17026789 exon Fit2 + chr3L 17026847 3` UTR Fit2 + chr3L 17026905 3` UTR Fit2 + chr3L_13_17025001 chr3L_17025001 RAL-381 1274 chr3L 17027165 17027179 chr3L 17027257 17027271 5 92 0.5 1.0 0.8 2.8 106 chr3L 17027165 intergenic Fit2 +,CG7730 + chr3L 17027218 intergenic Fit2 +,CG7730 + chr3L 17027271 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-381 1275 chr3L 17085012 17085031 chr3L 17094161 17094180 roo 10 9149 1.5 4.0 2.8 2.6 9168 chr3L 17085012 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094180 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-381 1276 chr3L 17120000 17120012 chr3L 17120113 17120126 7 114 7.5 6.5 7.0 0.9 126 chr3L 17120000 intron Rbp6 - chr3L 17120063 intron Rbp6 - chr3L 17120126 intron Rbp6 - chr3L_7_17120001 chr3L_17120001 RAL-381 1277 chr3L 17120660 17120684 chr3L 17120736 17120760 8 76 5.5 6.5 6.0 1.1 100 chr3L 17120660 intron Rbp6 - chr3L 17120710 intron Rbp6 - chr3L 17120760 intron Rbp6 - chr3L_8_17120001 chr3L_17120001 RAL-381 1278 chr3L 17149164 17149185 chr3L 17149245 17149266 7 81 3.0 0.0 1.5 2.8 102 chr3L 17149164 intron Rbp6 - chr3L 17149215 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-381 1279 chr3L 17153899 17153925 chr3L 17154144 17154169 5 245 4.0 2.5 3.2 1.2 270 chr3L 17153899 intron Rbp6 - chr3L 17154034 intron Rbp6 - chr3L 17154169 intron Rbp6 - chr3L_5_17150001 chr3L_17150001 RAL-381 1280 chr3L 17272244 17272266 chr3L 17272377 17272399 8 133 1.0 2.5 1.8 2.9 155 chr3L 17272244 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272399 intergenic not near genes chr3L_8_17270001 chr3L_17270001 RAL-381 1281 chr3L 17400150 17400173 chr3L 17400232 17400255 7 80 2.5 2.5 2.5 2.0 105 chr3L 17400150 intron blot - chr3L 17400202 intron blot - chr3L 17400255 intron blot - chr3L_7_17400001 chr3L_17400001 RAL-381 1282 chr3L 17414576 17414607 chr3L 17414667 17414668 15 84 3.5 4.0 3.8 3.1 92 chr3L 17414576 intron blot - chr3L 17414622 intron blot - chr3L 17414668 intron blot - chr3L_15_17410001 chr3L_17410001 RAL-381 1283 chr3L 17421607 17421626 chr3L 17421721 17421740 7 114 5.0 3.5 4.2 1.3 133 chr3L 17421607 intergenic blot -,Sec3 - chr3L 17421674 intergenic Sec3 -,blot - chr3L 17421740 intergenic Sec3 -,blot - chr3L_7_17420001 chr3L_17420001 RAL-381 1284 chr3L 17462224 17462250 chr3L 17462326 17462327 7 97 2.5 6.5 4.5 1.3 103 chr3L 17462224 intergenic not near genes chr3L 17462276 intergenic not near genes chr3L 17462327 intergenic not near genes chr3L_7_17460001 chr3L_17460001 RAL-381 1285 chr3L 17498103 17498113 chr3L 17498180 17498190 7 77 1.0 2.5 1.8 2.5 87 chr3L 17498103 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498190 intron Oatp74D + chr3L_7_17495001 chr3L_17495001 RAL-381 1286 chr3L 17510746 17510766 chr3L 17510830 17510850 5 83 4.5 5.5 5.0 0.8 104 chr3L 17510746 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-381 1287 chr3L 17516986 17517011 chr3L 17524544 17524564 412 8 7557 5.0 9.0 7.0 1.0 7578 chr3L 17516986 intron CG7564 + chr3L 17520775 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_8_17520001 chr3L_17520001 RAL-381 1288 chr3L 17535811 17535846 chr3L 17535925 17535950 16 113 3.0 5.0 4.0 3.2 139 chr3L 17535811 intron Nedd4 + chr3L 17535880 intron Nedd4 + chr3L 17535950 intron Nedd4 + chr3L_16_17535001 chr3L_17535001 RAL-381 1289 chr3L 17580593 17580611 chr3L 17580769 17580787 13 175 4.0 0.0 2.0 4.3 194 chr3L 17580593 intron Eip74EF - chr3L 17580690 intron Eip74EF - chr3L 17580787 intron Eip74EF - chr3L_13_17580001 chr3L_17580001 RAL-381 1290 chr3L 17612217 17612243 chr3L 17612302 17612328 7 84 4.0 2.0 3.0 1.8 111 chr3L 17612217 intron Eip74EF - chr3L 17612272 intron Eip74EF - chr3L 17612328 intron Eip74EF - chr3L_7_17610001 chr3L_17610001 RAL-381 1291 chr3L 17730862 17730879 chr3L 17738191 17738209 mdg1 4 7329 1.0 1.0 1.0 2.0 7347 chr3L 17730862 intron Ccn + chr3L 17734536 intron Ccn + chr3L 17738209 intron Ccn + chr3L_4_17730001 chr3L_17730001 RAL-381 1292 chr3L 8901305 8901337 chr3L 17828767 17828799 10 8927463 14.0 34.5 24.2 0.4 8927494 chr3L 8901305 intron TrpA1 - chr3L 13365052 intergenic not near genes chr3L 17828799 5` UTR Grd + chr3L_10_13365001 chr3L_13365001 RAL-381 1293 chr3L 17837625 17837656 chr3L 17837713 17837744 15 88 2.0 4.5 3.2 3.6 119 chr3L 17837625 exon Grd + chr3L 17837684 intron Grd + chr3L 17837744 exon Grd + chr3L_15_17835001 chr3L_17835001 RAL-381 1294 chr3L 17918378 17918398 chr3L 17921181 17921201 opus 5 2803 4.5 0.0 2.2 1.6 2823 chr3L 17918378 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921201 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-381 1295 chr3L 18029961 18029982 chr3L 18030038 18030059 7 77 1.0 0.5 0.8 3.9 98 chr3L 18029961 intron Eip75B - chr3L 18030010 intron Eip75B - chr3L 18030059 intron Eip75B - chr3L_7_18030001 chr3L_18030001 RAL-381 1296 chr3L 18089624 18089650 chr3L 18089716 18089731 7 91 2.5 1.0 1.8 2.5 107 chr3L 18089624 exon CG13698 - chr3L 18089678 intron CG13698 - chr3L 18089731 intron CG13698 - chr3L_7_18085001 chr3L_18085001 RAL-381 1297 chr3L 18092408 18092419 chr3L 18092530 18092534 7 123 8.0 11.5 9.8 0.6 126 chr3L 18092408 intron CG13698 - chr3L 18092471 intron CG13698 - chr3L 18092534 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-381 1298 chr3L 18118212 18118220 chr3L 18118290 18118298 5 78 3.0 4.0 3.5 1.1 86 chr3L 18118212 3` UTR,intron CG32195 +,CG7341 + chr3L 18118255 3` UTR,intron CG32195 +,CG7341 + chr3L 18118298 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-381 1299 chr3L 18134613 18134649 chr3L 18134750 18134782 9 135 2.0 5.0 3.5 2.0 169 chr3L 18134613 intergenic not near genes chr3L 18134698 intergenic not near genes chr3L 18134782 intergenic not near genes chr3L_9_18130001 chr3L_18130001 RAL-381 1300 chr3L 18223168 18223188 chr3L 18223251 18223255 9 80 3.0 0.0 1.5 3.6 87 chr3L 18223168 intergenic not near genes chr3L 18223212 intergenic not near genes chr3L 18223255 intergenic not near genes chr3L_9_18220001 chr3L_18220001 RAL-381 1301 chr3L 18352231 18352258 chr3L 18352811 18352838 5 580 1.0 0.5 0.8 2.8 607 chr3L 18352231 intergenic not near genes chr3L 18352534 intergenic not near genes chr3L 18352838 intergenic not near genes chr3L_5_18350001 chr3L_18350001 RAL-381 1302 chr3L 18375188 18375220 chr3L 18375265 18375299 5 79 0.0 0.0 0.0 5.0 111 chr3L 18375188 intergenic not near genes chr3L 18375244 intergenic not near genes chr3L 18375299 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-381 1303 chr3L 18378293 18378328 chr3L 18378427 18378460 14 133 4.5 2.5 3.5 3.1 167 chr3L 18378293 intergenic not near genes chr3L 18378376 intergenic not near genes chr3L 18378460 intergenic not near genes chr3L_14_18375001 chr3L_18375001 RAL-381 1304 chr3L 18383120 18383129 chr3L 18383202 18383211 6 82 0.0 1.5 0.8 3.3 91 chr3L 18383120 intergenic not near genes chr3L 18383166 intergenic not near genes chr3L 18383211 intergenic not near genes chr3L_6_18380001 chr3L_18380001 RAL-381 1305 chr3L 9013689 9013695 chr3L 18417066 18417066 12 9403373 24.0 15.5 19.8 0.6 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_12_13715001 chr3L_13715001 RAL-381 1306 chr3L 18436064 18436090 chr3L 18436162 18436188 4 98 2.5 0.5 1.5 1.6 124 chr3L 18436064 intergenic not near genes chr3L 18436126 intergenic not near genes chr3L 18436188 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-381 1307 chr3L 18456274 18456287 chr3L 18456362 18456375 4 86 1.5 3.5 2.5 1.1 101 chr3L 18456274 intergenic CR44670 - chr3L 18456324 intergenic CR44670 - chr3L 18456375 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-381 1308 chr3L 18506131 18506162 chr3L 18509594 18509625 F-element 12 3461 2.0 1.0 1.5 4.8 3494 chr3L 18506131 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509625 intergenic not near genes chr3L_12_18505001 chr3L_18505001 RAL-381 1309 chr3L 18528634 18528643 chr3L 18537794 18537804 roo 4 9161 4.0 1.0 2.5 1.1 9170 chr3L 18528634 intergenic not near genes chr3L 18533219 intergenic not near genes chr3L 18537804 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-381 1310 chr3L 18643240 18643268 chr3L 18643411 18643439 6 171 2.5 2.0 2.2 1.9 199 chr3L 18643240 intron MYPT-75D + chr3L 18643340 intron MYPT-75D + chr3L 18643439 intron MYPT-75D + chr3L_6_18640001 chr3L_18640001 RAL-381 1311 chr3L 18656191 18656220 chr3L 18656269 18656305 13 80 5.5 11.0 8.2 1.4 114 chr3L 18656191 intron MYPT-75D + chr3L 18656248 intron MYPT-75D + chr3L 18656305 intron MYPT-75D + chr3L_13_18655001 chr3L_18655001 RAL-381 1312 chr3L 18680460 18680497 chr3L 18680569 18680598 16 105 2.0 1.5 1.8 5.7 138 chr3L 18680460 exon CG34254 + chr3L 18680529 intron CG34254 + chr3L 18680598 exon CG34254 + chr3L_16_18680001 chr3L_18680001 RAL-381 1313 chr3L 18721770 18721806 chr3L 18721861 18721897 11 88 3.5 1.5 2.5 3.1 127 chr3L 18721770 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_11_18720001 chr3L_18720001 RAL-381 1314 chr3L 18730377 18730387 chr3L 18730555 18730563 8 178 8.5 4.0 6.2 1.1 186 chr3L 18730377 intergenic not near genes chr3L 18730470 intergenic not near genes chr3L 18730563 intergenic not near genes chr3L_8_18730001 chr3L_18730001 RAL-381 1315 chr3L 18772406 18772442 chr3L 18781087 18781122 roo 13 8681 3.5 5.0 4.2 2.5 8716 chr3L 18772406 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_13_18775001 chr3L_18775001 RAL-381 1316 chr3L 18810146 18810177 chr3L 18810223 18810259 5 81 1.5 1.0 1.2 2.3 113 chr3L 18810146 intron CG14073 - chr3L 18810202 intron CG14073 - chr3L 18810259 intron CG14073 - chr3L_5_18810001 chr3L_18810001 RAL-381 1317 chr3L 18831866 18831878 chr3L 18831947 18831951 5 79 2.0 2.5 2.2 1.6 85 chr3L 18831866 intron Indy - chr3L 18831908 intron Indy - chr3L 18831951 exon Indy - chr3L_5_18830001 chr3L_18830001 RAL-381 1318 chr3L 18839736 18839766 chr3L 18839819 18839849 9 83 2.5 4.0 3.2 2.1 113 chr3L 18839736 intron Indy - chr3L 18839792 intron Indy - chr3L 18839849 intron Indy - chr3L_9_18835001 chr3L_18835001 RAL-381 1319 chr3L 18841361 18841391 chr3L 18841469 18841499 9 108 3.5 3.5 3.5 2.0 138 chr3L 18841361 intron Indy - chr3L 18841430 intron Indy - chr3L 18841499 intron Indy - chr3L_9_18840001 chr3L_18840001 RAL-381 1320 chr3L 18924479 18924507 chr3L 18924555 18924583 5 76 0.0 0.5 0.2 4.2 104 chr3L 18924479 intron CG32204 - chr3L 18924531 intron CG32204 - chr3L 18924583 intron CG32204 - chr3L_5_18920001 chr3L_18920001 RAL-381 1321 chr3L 18933630 18933660 chr3L 18933724 18933753 4 94 2.0 1.5 1.8 1.4 123 chr3L 18933630 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-381 1322 chr3L 18957294 18957327 chr3L 18957374 18957408 22 80 2.0 5.5 3.8 4.6 114 chr3L 18957294 intergenic not near genes chr3L 18957351 intergenic not near genes chr3L 18957408 intergenic not near genes chr3L_22_18955001 chr3L_18955001 RAL-381 1323 chr3L 19008845 19008870 chr3L 19009183 19009208 jockey 10 337 5.0 4.0 4.5 1.8 363 chr3L 19008845 intron nkd - chr3L 19009026 intron nkd - chr3L 19009208 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-381 1324 chr3L 19111848 19111875 chr3L 19112094 19112120 8 246 3.0 4.0 3.5 1.8 272 chr3L 19111848 intron CG14082 - chr3L 19111984 intron CG14082 - chr3L 19112120 intron CG14082 - chr3L_8_19110001 chr3L_19110001 RAL-381 1325 chr3L 19115635 19115668 chr3L 19115813 19115848 BS 13 176 4.0 0.5 2.2 4.1 213 chr3L 19115635 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115848 intron CG14082 - chr3L_13_19115001 chr3L_19115001 RAL-381 1326 chr3L 19117046 19117076 chr3L 19124493 19124523 mdg1 14 7444 5.0 6.5 5.8 2.1 7477 chr3L 19117046 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-381 1327 chr3L 19138555 19138588 chr3L 19138635 19138669 13 78 5.0 4.5 4.8 2.2 114 chr3L 19138555 intron CG14082 - chr3L 19138612 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_13_19135001 chr3L_19135001 RAL-381 1328 chr3L 19182384 19182418 chr3L 19182465 19182499 8 80 0.0 2.5 1.2 3.6 115 chr3L 19182384 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182499 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-381 1329 chr3L 19202467 19202495 chr3L 19202785 19202795 10 314 4.0 4.0 4.0 2.0 328 chr3L 19202467 intron fz2 - chr3L 19202631 intron fz2 - chr3L 19202795 intron fz2 - chr3L_10_19200001 chr3L_19200001 RAL-381 1330 chr3L 19208056 19208090 chr3L 19209430 19209459 Doc 11 1373 3.0 2.5 2.8 2.9 1403 chr3L 19208056 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209459 intron fz2 - chr3L_11_19205001 chr3L_19205001 RAL-381 1331 chr3L 19220633 19220633 chr3L 22908066 22908067 4 3687433 25.0 23.5 24.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-381 1332 chr3L 19238734 19238750 chr3L 19238841 19238857 6 107 0.5 3.5 2.0 2.0 123 chr3L 19238734 intergenic not near genes chr3L 19238796 intergenic not near genes chr3L 19238857 intergenic not near genes chr3L_6_19235001 chr3L_19235001 RAL-381 1333 chr3L 19265247 19265275 chr3L 19265324 19265352 4 77 3.5 2.5 3.0 1.0 105 chr3L 19265247 3` UTR,exon CG42374 +,CG9666 + chr3L 19265300 3` UTR,exon CG42374 +,CG9666 + chr3L 19265352 3` UTR,exon CG42374 +,CG9666 + chr3L_4_19265001 chr3L_19265001 RAL-381 1334 chr3L 19269822 19269849 chr3L 19270020 19270044 15 202 4.0 3.0 3.5 3.3 222 chr3L 19269822 intron,exon CG14085 +,CG14088 - chr3L 19269933 intron,exon CG14085 +,CG14088 - chr3L 19270044 intron,exon CG14085 +,CG14088 - chr3L_15_19265001 chr3L_19265001 RAL-381 1335 chr3L 19369842 19369865 chr3L 19369924 19369947 6 81 2.5 3.0 2.8 1.6 105 chr3L 19369842 intron CG32206 - chr3L 19369894 intron CG32206 - chr3L 19369947 intron CG32206 - chr3L_6_19365001 chr3L_19365001 RAL-381 1336 chr3L 19409757 19409778 chr3L 19409835 19409856 6 76 2.0 1.0 1.5 2.4 99 chr3L 19409757 intron CG32206 - chr3L 19409806 intron CG32206 - chr3L 19409856 intron CG32206 - chr3L_6_19405001 chr3L_19405001 RAL-381 1337 chr3L 19417799 19417826 chr3L 19417879 19417903 6 78 4.0 2.0 3.0 1.5 104 chr3L 19417799 intergenic not near genes chr3L 19417851 intergenic not near genes chr3L 19417903 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-381 1338 chr3L 19426749 19426781 chr3L 19426824 19426857 8 77 6.5 8.5 7.5 0.9 108 chr3L 19426749 intergenic not near genes chr3L 19426803 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_8_19425001 chr3L_19425001 RAL-381 1339 chr3L 19439281 19439289 chr3L 19439367 19439375 5 86 0.0 5.0 2.5 1.4 94 chr3L 19439281 intergenic not near genes chr3L 19439328 intergenic not near genes chr3L 19439375 intergenic not near genes chr3L_5_19435001 chr3L_19435001 RAL-381 1340 chr3L 19488479 19488496 chr3L 19488561 19488578 5 82 6.5 3.0 4.8 0.9 99 chr3L 19488479 intergenic pncr009:3L -,CG32212 + chr3L 19488528 intergenic pncr009:3L -,CG32212 + chr3L 19488578 intergenic pncr009:3L -,CG32212 + chr3L_5_19485001 chr3L_19485001 RAL-381 1341 chr3L 19848504 19848534 chr3L 19857693 19857724 roo 8 9190 2.0 5.0 3.5 1.8 9220 chr3L 19848504 intron Papss + chr3L 19853114 intron Papss + chr3L 19857724 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-381 1342 chr3L 19861826 19861844 chr3L 19863614 19863632 S-element 8 1788 3.5 3.5 3.5 1.8 1806 chr3L 19861826 5` UTR CR45433 + chr3L 19862729 intergenic not near genes chr3L 19863632 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-381 1343 chr3L 19957109 19957141 chr3L 19957271 19957303 16 161 2.5 2.0 2.2 5.0 194 chr3L 19957109 intron Ac76E + chr3L 19957206 intron Ac76E + chr3L 19957303 intron Ac76E + chr3L_16_19955001 chr3L_19955001 RAL-381 1344 chr3L 20113478 20113506 chr3L 20113573 20113601 8 95 1.5 1.5 1.5 3.2 123 chr3L 20113478 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113601 intergenic not near genes chr3L_8_20110001 chr3L_20110001 RAL-381 1345 chr3L 20113669 20113686 chr3L 20122926 20122943 roo 4 9257 1.0 1.5 1.2 1.8 9274 chr3L 20113669 intergenic not near genes chr3L 20118306 intergenic not near genes chr3L 20122943 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-381 1346 chr3L 20143079 20143112 chr3L 20143159 20143168 15 78 4.5 3.0 3.8 3.1 89 chr3L 20143079 intergenic not near genes chr3L 20143124 intergenic not near genes chr3L 20143168 intergenic not near genes chr3L_15_20140001 chr3L_20140001 RAL-381 1347 chr3L 20257345 20257358 chr3L 20258465 20258478 pogo 6 1120 1.5 8.5 5.0 1.0 1133 chr3L 20257345 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258478 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-381 1348 chr3L 20283676 20283705 chr3L 20283760 20283789 10 84 1.0 2.0 1.5 4.0 113 chr3L 20283676 intron gogo - chr3L 20283732 intron gogo - chr3L 20283789 intron gogo - chr3L_10_20280001 chr3L_20280001 RAL-381 1349 chr3L 20315653 20315683 chr3L 20315733 20315759 11 79 4.0 3.0 3.5 2.4 106 chr3L 20315653 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315706 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315759 3` UTR,intron alphaSnap +,CR43875 - chr3L_11_20315001 chr3L_20315001 RAL-381 1350 chr3L 20405574 20405608 chr3L 20405658 20405691 16 82 5.0 2.5 3.8 3.3 117 chr3L 20405574 intergenic not near genes chr3L 20405632 intergenic not near genes chr3L 20405691 intergenic not near genes chr3L_16_20405001 chr3L_20405001 RAL-381 1351 chr3L 20476755 20476782 chr3L 20484354 20484381 springer 4 7599 3.0 1.0 2.0 1.3 7626 chr3L 20476755 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484381 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-381 1352 chr3L 20781380 20781415 chr3L 20781466 20781499 12 86 1.0 4.5 2.8 3.2 119 chr3L 20781380 3` UTR CG11399 - chr3L 20781440 3` UTR CG11399 - chr3L 20781499 3` UTR CG11399 - chr3L_12_20780001 chr3L_20780001 RAL-381 1353 chr3L 20825868 20825883 chr3L 20825984 20826011 8 124 3.0 1.0 2.0 2.7 143 chr3L 20825868 intron Pka-R1 + chr3L 20825940 intron Pka-R1 + chr3L 20826011 intron Pka-R1 + chr3L_8_20825001 chr3L_20825001 RAL-381 1354 chr3L 20831471 20831497 chr3L 20831591 20831618 13 120 5.5 6.5 6.0 1.9 147 chr3L 20831471 intron Pka-R1 + chr3L 20831544 intron Pka-R1 + chr3L 20831618 intron Pka-R1 + chr3L_13_20830001 chr3L_20830001 RAL-381 1355 chr3L 20849290 20849297 chr3L 20849352 20849376 4 75 3.5 3.0 3.2 1.0 86 chr3L 20849290 intron CG32432 - chr3L 20849333 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-381 1356 chr3L 21014915 21014924 chr3L 21023396 21023402 Tirant 4 8480 9.0 3.0 6.0 0.6 8487 chr3L 21014915 intron skd - chr3L 21019158 intron skd - chr3L 21023402 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-381 1357 chr3L 21014930 21014946 chr3L 21023395 21023413 Tirant 10 8469 5.0 2.5 3.8 2.1 8483 chr3L 21014930 intron skd - chr3L 21019172 intron skd - chr3L 21023413 intron skd - chr3L_10_21015001 chr3L_21015001 RAL-381 1358 chr3L 21069964 21069995 chr3L 21070048 21070079 13 84 0.5 2.5 1.5 5.2 115 chr3L 21069964 intron siz + chr3L 21070022 intron siz + chr3L 21070079 intron siz + chr3L_13_21070001 chr3L_21070001 RAL-381 1359 chr3L 21082210 21082241 chr3L 21082288 21082318 16 76 2.5 3.5 3.0 4.0 108 chr3L 21082210 intron ko - chr3L 21082264 intron ko - chr3L 21082318 intron ko - chr3L_16_21080001 chr3L_21080001 RAL-381 1360 chr3L 21151871 21151884 chr3L 21156955 21156968 flea 4 5084 4.0 1.0 2.5 1.1 5097 chr3L 21151871 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156968 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-381 1361 chr3L 21243747 21243768 chr3L 21251309 21251331 412 12 7562 4.0 6.5 5.2 1.9 7584 chr3L 21243747 intron Eip78C + chr3L 21247539 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_12_21245001 chr3L_21245001 RAL-381 1362 chr3L 21306158 21306173 chr3L 21315317 21315332 roo 5 9159 6.0 3.5 4.8 0.9 9174 chr3L 21306158 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310745 intron Pc - chr3L 21315332 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-381 1363 chr3L 21306174 21306181 chr3L 21315308 21315340 roo 4 9152 4.5 2.5 3.5 0.9 9166 chr3L 21306174 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310757 intron Pc - chr3L 21315340 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-381 1364 chr3L 21406995 21407004 chr3L 21407073 21407081 5 78 7.0 1.5 4.2 1.0 86 chr3L 21406995 intron rgn + chr3L 21407038 intron rgn + chr3L 21407081 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-381 1365 chr3L 21407009 21407023 chr3L 21407072 21407099 9 75 4.5 1.5 3.0 2.2 90 chr3L 21407009 intron rgn + chr3L 21407054 intron rgn + chr3L 21407099 intron rgn + chr3L_9_21405001 chr3L_21405001 RAL-381 1366 chr3L 21458342 21458357 chr3L 21458437 21458446 INE-1 5 94 3.0 2.5 2.8 1.3 104 chr3L 21458342 intergenic not near genes chr3L 21458394 intergenic not near genes chr3L 21458446 intergenic not near genes chr3L_5_21455001 chr3L_21455001 RAL-381 1367 chr3L 21498834 21498866 chr3L 21500470 21500502 1360 12 1630 7.0 3.0 5.0 2.0 1668 chr3L 21498834 intron Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_12_21495001 chr3L_21495001 RAL-381 1368 chr3L 21559103 21559122 chr3L 21559480 21559502 10 380 1.5 2.5 2.0 3.3 399 chr3L 21559103 3` UTR CapaR - chr3L 21559302 3` UTR CapaR - chr3L 21559502 intron CapaR - chr3L_10_21555001 chr3L_21555001 RAL-381 1369 chr3L 21639198 21639225 chr3L 21639277 21639304 12 77 4.5 3.0 3.8 2.5 106 chr3L 21639198 intergenic CG32444 +,CG32445 + chr3L 21639251 intergenic CG32445 +,CG32444 + chr3L 21639304 intergenic CG32445 +,CG32444 + chr3L_12_21635001 chr3L_21635001 RAL-381 1370 chr3L 21657008 21657021 chr3L 21657091 21657114 5 90 7.5 3.5 5.5 0.8 106 chr3L 21657008 intron CG43980 + chr3L 21657061 intron CG43980 + chr3L 21657114 intron CG43980 + chr3L_5_21655001 chr3L_21655001 RAL-381 1371 chr3L 21749315 21749349 chr3L 21754475 21754498 Doc 11 5157 4.5 2.0 3.2 2.6 5183 chr3L 21749315 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754498 intron Syn1 - chr3L_11_21750001 chr3L_21750001 RAL-381 1372 chr3L 21776674 21776701 chr3L 21776761 21776788 9 87 2.0 4.0 3.0 2.2 114 chr3L 21776674 intron,intron CG42689 +,CG42552 + chr3L 21776731 intron,intron CG42689 +,CG42552 + chr3L 21776788 intron,intron CG42689 +,CG42552 + chr3L_9_21775001 chr3L_21775001 RAL-381 1373 chr3L 21802036 21802067 chr3L 21802558 21802589 12 521 2.5 5.0 3.8 2.5 553 chr3L 21802036 intergenic not near genes chr3L 21802312 intergenic not near genes chr3L 21802589 intergenic not near genes chr3L_12_21800001 chr3L_21800001 RAL-381 1374 chr3L 21852265 21852282 chr3L 21852351 21852374 6 90 5.0 7.0 6.0 0.9 109 chr3L 21852265 intron mub + chr3L 21852320 intron mub + chr3L 21852374 intron mub + chr3L_6_21850001 chr3L_21850001 RAL-381 1375 chr3L 21872423 21872454 chr3L 21872502 21872533 4 78 2.5 4.0 3.2 1.0 110 chr3L 21872423 intron mub + chr3L 21872478 intron mub + chr3L 21872533 intron mub + chr3L_4_21870001 chr3L_21870001 RAL-381 1376 chr3L 21936523 21936550 chr3L 21936615 21936642 10 92 5.0 5.5 5.2 1.6 119 chr3L 21936523 intron CG7442 + chr3L 21936582 intron CG7442 + chr3L 21936642 intron CG7442 + chr3L_10_21935001 chr3L_21935001 RAL-381 1377 chr3L 21987862 21987870 chr3L 21988037 21988046 4 176 6.5 4.0 5.2 0.6 184 chr3L 21987862 intergenic not near genes chr3L 21987954 intergenic not near genes chr3L 21988046 intergenic not near genes chr3L_4_21985001 chr3L_21985001 RAL-381 1378 chr3L 22023216 22023250 chr3L 22023308 22023339 7 89 2.0 2.0 2.0 2.3 123 chr3L 22023216 intergenic not near genes chr3L 22023278 intergenic not near genes chr3L 22023339 intergenic not near genes chr3L_7_22020001 chr3L_22020001 RAL-381 1379 chr3L 22046181 22046216 chr3L 22046284 22046319 5 103 3.0 2.5 2.8 1.3 138 chr3L 22046181 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046319 intron Oct-TyrR + chr3L_5_22045001 chr3L_22045001 RAL-381 1380 chr3L 22051153 22051186 chr3L 22051239 22051250 7 83 2.0 2.0 2.0 2.3 97 chr3L 22051153 intron Oct-TyrR + chr3L 22051202 intron Oct-TyrR + chr3L 22051250 intron Oct-TyrR + chr3L_7_22050001 chr3L_22050001 RAL-381 1381 chr3L 22099679 22099704 chr3L 22105865 22105890 3S18 6 6185 3.0 2.0 2.5 1.7 6211 chr3L 22099679 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-381 1382 chr3L 22137527 22137556 chr3L 22137604 22137633 5 77 3.5 6.0 4.8 0.9 106 chr3L 22137527 intron olf413 + chr3L 22137580 intron olf413 + chr3L 22137633 intron olf413 + chr3L_5_22135001 chr3L_22135001 RAL-381 1383 chr3L 22170036 22170052 chr3L 22170149 22170170 5 115 3.5 4.0 3.8 1.0 134 chr3L 22170036 intron olf413 + chr3L 22170103 intron olf413 + chr3L 22170170 intron olf413 + chr3L_5_22170001 chr3L_22170001 RAL-381 1384 chr3L 22361939 22361966 chr3L 22362016 22362042 4 77 8.0 4.0 6.0 0.6 103 chr3L 22361939 intron Ten-m - chr3L 22361990 intron Ten-m - chr3L 22362042 intron Ten-m - chr3L_4_22360001 chr3L_22360001 RAL-381 1385 chr3L 22395597 22395631 chr3L 22395680 22395713 9 82 1.5 5.5 3.5 2.0 116 chr3L 22395597 intron Ten-m - chr3L 22395655 intron Ten-m - chr3L 22395713 intron Ten-m - chr3L_9_22395001 chr3L_22395001 RAL-381 1386 chr3L 22507125 22507154 chr3L 22507212 22507241 4 86 3.0 5.5 4.2 0.8 116 chr3L 22507125 intergenic not near genes chr3L 22507183 intergenic not near genes chr3L 22507241 intergenic not near genes chr3L_4_22505001 chr3L_22505001 RAL-381 1387 chr3L 22522708 22522729 chr3L 22522784 22522805 8 76 1.5 2.0 1.8 2.9 97 chr3L 22522708 intergenic not near genes chr3L 22522756 intergenic not near genes chr3L 22522805 intergenic not near genes chr3L_8_22520001 chr3L_22520001 RAL-381 1388 chr3L 22554426 22554449 chr3L 22554502 22554525 13 75 3.5 3.5 3.5 2.9 99 chr3L 22554426 intergenic not near genes chr3L 22554476 intergenic not near genes chr3L 22554525 intergenic not near genes chr3L_13_22550001 chr3L_22550001 RAL-381 1389 chr3L 22555775 22555803 chr3L 22563242 22563243 blood 9 7463 3.0 2.0 2.5 2.6 7468 chr3L 22555775 intergenic not near genes chr3L 22559509 intergenic not near genes chr3L 22563243 intergenic not near genes chr3L_9_22555001 chr3L_22555001 RAL-381 1390 chr3L 22569575 22569603 chr3L 22569673 22569700 14 96 6.5 2.5 4.5 2.5 125 chr3L 22569575 intergenic not near genes chr3L 22569638 intergenic not near genes chr3L 22569700 intergenic not near genes chr3L_14_22565001 chr3L_22565001 RAL-381 1391 chr3L 22577633 22577652 chr3L 22582402 22582438 Doc 14 4783 0.5 3.5 2.0 4.7 4805 chr3L 22577633 intergenic not near genes chr3L 22580036 intergenic not near genes chr3L 22582438 3` UTR CG14459 - chr3L_14_22580001 chr3L_22580001 RAL-381 1392 chr3L 22617199 22617222 chr3L 22624640 22624672 blood 9 7444 4.5 4.0 4.2 1.7 7473 chr3L 22617199 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-381 1393 chr3L 22630751 22630770 chr3L 22630830 22630844 8 78 3.5 5.5 4.5 1.5 93 chr3L 22630751 intron CG14459 - chr3L 22630798 intron CG14459 - chr3L 22630844 intron CG14459 - chr3L_8_22630001 chr3L_22630001 RAL-381 1394 chr3L 22652329 22652352 chr3L 22652458 22652490 7 136 5.5 5.5 5.5 1.1 161 chr3L 22652329 exon CG33772 - chr3L 22652410 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_7_22650001 chr3L_22650001 RAL-381 1395 chr3L 22761397 22761415 chr3L 22766831 22766848 Ivk 5 5434 1.0 5.5 3.2 1.2 5451 chr3L 22761397 intron SPoCk + chr3L 22764122 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-381 1396 chr3L 22848706 22848732 chr3L 22848796 22848822 6 90 3.0 5.5 4.2 1.2 116 chr3L 22848706 intergenic not near genes chr3L 22848764 intergenic not near genes chr3L 22848822 intergenic not near genes chr3L_6_22845001 chr3L_22845001 RAL-381 1397 chr3L 22865981 22866015 chr3L 22867114 22867148 Doc 10 1131 4.5 3.0 3.8 2.1 1167 chr3L 22865981 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867148 intron CG33170 + chr3L_10_22865001 chr3L_22865001 RAL-381 1398 chr3L 22885914 22885946 chr3L 22885990 22886023 11 75 4.0 4.5 4.2 2.1 109 chr3L 22885914 intron slif + chr3L 22885968 intron slif + chr3L 22886023 intron slif + chr3L_11_22885001 chr3L_22885001 RAL-381 1399 chr3L 19220633 19220636 chr3L 22908066 22908066 4 3687432 25.5 23.5 24.5 0.2 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-381 1400 chr3L 19220633 19220637 chr3L 22908067 22908067 4 3687432 26.0 22.5 24.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-381 1401 chr3L 22910332 22910357 chr3L 22910704 22910715 13 369 1.0 6.0 3.5 2.9 383 chr3L 22910332 intergenic CG12768 + chr3L 22910524 5` UTR CG12768 + chr3L 22910715 intron CG12768 + chr3L_13_22910001 chr3L_22910001 RAL-381 1402 chr3L 22912769 22912790 chr3L 22912850 22912871 4 81 1.5 1.0 1.2 1.8 102 chr3L 22912769 intron CG12768 + chr3L 22912820 intron CG12768 + chr3L 22912871 intron CG12768 + chr3L_4_22910001 chr3L_22910001 RAL-381 1403 chr3L 22915176 22915204 chr3L 22915283 22915311 6 106 3.5 3.5 3.5 1.3 135 chr3L 22915176 intron CG12768 + chr3L 22915244 intron CG12768 + chr3L 22915311 intron CG12768 + chr3L_6_22915001 chr3L_22915001 RAL-381 1404 chr3L 22920935 22920962 chr3L 22921023 22921050 11 86 5.0 3.0 4.0 2.2 115 chr3L 22920935 intron CG12768 + chr3L 22920992 intron CG12768 + chr3L 22921050 intron CG12768 + chr3L_11_22920001 chr3L_22920001 RAL-381 1405 chr3L 22943712 22943741 chr3L 22943917 22943945 14 202 3.0 3.0 3.0 3.5 233 chr3L 22943712 intergenic not near genes chr3L 22943828 intergenic not near genes chr3L 22943945 intergenic not near genes chr3L_14_22940001 chr3L_22940001 RAL-381 1406 chr3L 22974360 22974395 chr3L 22974438 22974474 19 78 3.5 3.0 3.2 4.5 114 chr3L 22974360 intergenic not near genes chr3L 22974417 intergenic not near genes chr3L 22974474 intergenic not near genes chr3L_19_22970001 chr3L_22970001 RAL-381 1407 chr3L 22989863 22989895 chr3L 22996837 22996865 297 10 6972 2.5 2.5 2.5 2.9 7002 chr3L 22989863 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996865 intergenic not near genes chr3L_10_22990001 chr3L_22990001 RAL-381 1408 chr3L 23004902 23004941 chr3L 23005228 23005267 11 322 2.0 1.5 1.8 3.9 365 chr3L 23004902 intron nrm + chr3L 23005084 intron nrm + chr3L 23005267 intron nrm + chr3L_11_23005001 chr3L_23005001 RAL-381 1409 chr3L 23182823 23182852 chr3L 23182897 23182922 16 75 1.0 3.0 2.0 5.3 99 chr3L 23182823 intron CG34031 + chr3L 23182872 intron CG34031 + chr3L 23182922 intron CG34031 + chr3L_16_23180001 chr3L_23180001 RAL-381 1410 chr3L 21145700 21145703 chr3L 23747150 23747153 4 2601450 10.5 16.0 13.2 0.3 2601453 chr3L 21145700 intron Ac78C - chr3L 22446426 intergenic not near genes chr3L 23747153 intron CG17698 + chr3L_4_22445001 chr3L_22445001 RAL-381 1411 chr3L 23750930 23750959 chr3L 23751131 23751160 14 202 39.0 22.5 30.8 0.4 230 chr3L 23750930 intergenic not near genes chr3L 23751045 intergenic not near genes chr3L 23751160 intergenic not near genes chr3L_14_23750001 chr3L_23750001 RAL-381 1412 chr3L 23875525 23875555 chr3L 23875606 23875636 5 79 3.5 3.0 3.2 1.2 111 chr3L 23875525 intron CG40470 - chr3L 23875580 intron CG40470 - chr3L 23875636 intron CG40470 - chr3L_5_23875001 chr3L_23875001 RAL-381 1413 chr3L 23880629 23880661 chr3L 23880735 23880768 5 107 0.0 1.5 0.8 2.8 139 chr3L 23880629 intron CG40470 - chr3L 23880698 intron CG40470 - chr3L 23880768 intron CG40470 - chr3L_5_23880001 chr3L_23880001 RAL-381 1414 chr3L 24168786 24168822 chr3L 24176114 24176145 ZAM 5 7323 3.5 7.0 5.2 0.8 7359 chr3L 24168786 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176145 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-381 1415 chr3L 25331635 25331651 chr3L 25331726 25331742 8 86 14.0 7.0 10.5 0.7 107 chr3L 25331635 intergenic not near genes chr3L 25331688 intergenic not near genes chr3L 25331742 intergenic not near genes chr3L_8_25330001 chr3L_25330001 RAL-381 1416 chr3L 26010835 26010853 chr3L 26010919 26010937 7 84 0.5 3.0 1.8 2.5 102 chr3L 26010835 intron CG40178 - chr3L 26010886 intron CG40178 - chr3L 26010937 intron CG40178 - chr3L_7_26010001 chr3L_26010001 RAL-381 1417 chr3L 27390460 27390697 chr3L 27390678 27390776 8 96 12.5 29.0 20.8 0.4 316 chr3L 27390460 intron Dbp80 + chr3L 27390618 intron Dbp80 + chr3L 27390776 intron Dbp80 + chr3L_8_27390001 chr3L_27390001 RAL-381 1418 chr3R 2534133 2534147 chr3R 2541702 2541716 4 7568 28.5 17.0 22.8 0.2 7583 chr3R 2534133 intergenic not near genes chr3R 2537924 intergenic not near genes chr3R 2541716 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-381 1419 chr3R 2534155 2534167 chr3R 2541708 2541736 4 7561 20.0 20.0 20.0 0.2 7581 chr3R 2534155 intergenic not near genes chr3R 2537946 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-381 1420 chr3R 2556885 2556912 chr3R 2557625 2557645 5 734 16.0 10.5 13.2 0.4 760 chr3R 2556885 intron CG41056 - chr3R 2557265 intron CG41056 - chr3R 2557645 intron CG41056 - chr3R_5_2555001 chr3R_2555001 RAL-381 1421 chr3R 3256352 3256363 chr3R 3256784 3256795 8 432 2.5 6.0 4.2 1.5 443 chr3R 3256352 intron CG42617 - chr3R 3256574 intron CG42617 - chr3R 3256795 intron CG42617 - chr3R_8_3255001 chr3R_3255001 RAL-381 1422 chr3R 4063809 4063829 chr3R 4069089 4069109 10 5279 10.5 19.0 14.8 0.6 5300 chr3R 4063809 intergenic not near genes chr3R 4066459 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_10_4065001 chr3R_4065001 RAL-381 1423 chr3R 4105038 4105064 chr3R 4110242 4110267 copia 5 5202 2.0 3.5 2.8 1.3 5229 chr3R 4105038 intergenic not near genes chr3R 4107652 intergenic not near genes chr3R 4110267 intergenic not near genes chr3R_5_4105001 chr3R_4105001 RAL-381 1424 chr3R 4206070 4206088 chr3R 4211644 4211663 mdg3 5 5575 6.0 1.5 3.8 1.0 5593 chr3R 4206070 intron CG14636 - chr3R 4208866 intron CG14636 - chr3R 4211663 intron CG14636 - chr3R_5_4205001 chr3R_4205001 RAL-381 1425 chr3R 4408413 4408429 chr3R 4412717 4412733 Juan 6 4304 2.5 3.0 2.8 1.6 4320 chr3R 4408413 intron CG32944 - chr3R 4410573 intron CG32944 - chr3R 4412733 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-381 1426 chr3R 4588747 4588773 chr3R 4588831 4588854 10 82 1.5 3.0 2.2 3.1 107 chr3R 4588747 intron CR45558 - chr3R 4588800 intron CR45558 - chr3R 4588854 intron CR45558 - chr3R_10_4585001 chr3R_4585001 RAL-381 1427 chr3R 4680011 4680027 chr3R 4680142 4680158 6 131 2.0 2.5 2.2 1.9 147 chr3R 4680011 intron CG43427 + chr3R 4680084 intron CG43427 + chr3R 4680158 intron CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-381 1428 chr3R 4753239 4753260 chr3R 4757542 4757542 F-element 10 4301 8.0 4.5 6.2 1.4 4303 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755390 intron,intron atms +,CG44098 - chr3R 4757542 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-381 1429 chr3R 4753265 4753268 chr3R 4757540 4757565 F-element 4 4294 7.0 4.0 5.5 0.6 4300 chr3R 4753265 intron,intron atms +,CG44098 - chr3R 4755415 intron,intron atms +,CG44098 - chr3R 4757565 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-381 1430 chr3R 4764464 4764493 chr3R 4764696 4764725 13 232 3.5 4.5 4.0 2.6 261 chr3R 4764464 intron,intron atms +,CG44098 - chr3R 4764594 intron,intron atms +,CG44098 - chr3R 4764725 intron,intron atms +,CG44098 - chr3R_13_4760001 chr3R_4760001 RAL-381 1431 chr3R 4769159 4769188 chr3R 4769237 4769266 16 78 4.5 5.0 4.8 2.8 107 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_16_4765001 chr3R_4765001 RAL-381 1432 chr3R 4861566 4861595 chr3R 4861647 4861653 13 76 5.5 4.0 4.8 2.2 87 chr3R 4861566 intron opa + chr3R 4861610 intron opa + chr3R 4861653 intron opa + chr3R_13_4860001 chr3R_4860001 RAL-381 1433 chr3R 4887477 4887512 chr3R 4894854 4894889 rover 9 7372 1.5 3.5 2.5 2.6 7412 chr3R 4887477 intergenic not near genes chr3R 4891183 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-381 1434 chr3R 4922346 4922361 chr3R 4922425 4922437 9 79 3.5 3.5 3.5 2.0 91 chr3R 4922346 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922437 intron Cdep + chr3R_9_4920001 chr3R_4920001 RAL-381 1435 chr3R 4943612 4943623 chr3R 4943717 4943728 5 105 3.0 2.0 2.5 1.4 116 chr3R 4943612 intron Cdep + chr3R 4943670 intron Cdep + chr3R 4943728 intron Cdep + chr3R_5_4940001 chr3R_4940001 RAL-381 1436 chr3R 4966004 4966034 chr3R 4966096 4966126 9 90 1.5 3.5 2.5 2.6 122 chr3R 4966004 intron CG1124 + chr3R 4966065 intron CG1124 + chr3R 4966126 intron CG1124 + chr3R_9_4965001 chr3R_4965001 RAL-381 1437 chr3R 4975937 4975953 chr3R 4976038 4976054 5 101 3.5 2.0 2.8 1.3 117 chr3R 4975937 intergenic not near genes chr3R 4975996 intergenic not near genes chr3R 4976054 intergenic not near genes chr3R_5_4975001 chr3R_4975001 RAL-381 1438 chr3R 5045848 5045867 chr3R 5052950 5052969 HMS-Beagle 4 7102 8.0 2.5 5.2 0.6 7121 chr3R 5045848 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052969 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-381 1439 chr3R 5067981 5068014 chr3R 5073498 5073498 mdg3 5 5510 4.0 2.0 3.0 1.2 5517 chr3R 5067981 intergenic not near genes chr3R 5070740 intergenic not near genes chr3R 5073498 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-381 1440 chr3R 5099315 5099344 chr3R 5099451 5099471 14 135 4.0 5.5 4.8 2.4 156 chr3R 5099315 intergenic not near genes chr3R 5099393 intergenic not near genes chr3R 5099471 intergenic not near genes chr3R_14_5095001 chr3R_5095001 RAL-381 1441 chr3R 5158164 5158176 chr3R 5158257 5158269 6 93 3.0 5.0 4.0 1.2 105 chr3R 5158164 intron dpr16 + chr3R 5158216 intron dpr16 + chr3R 5158269 intron dpr16 + chr3R_6_5155001 chr3R_5155001 RAL-381 1442 chr3R 5278092 5278123 chr3R 5278168 5278203 17 78 4.0 4.5 4.2 3.3 111 chr3R 5278092 intron mtd - chr3R 5278148 intron mtd - chr3R 5278203 intron mtd - chr3R_17_5275001 chr3R_5275001 RAL-381 1443 chr3R 5338396 5338428 chr3R 5343573 5343602 Rt1c 9 5176 3.0 3.5 3.2 2.1 5206 chr3R 5338396 intron mtd - chr3R 5340999 intron mtd - chr3R 5343602 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-381 1444 chr3R 5428576 5428605 chr3R 5428655 5428683 6 79 5.0 3.0 4.0 1.2 107 chr3R 5428576 intron CG14669 + chr3R 5428630 intron CG14669 + chr3R 5428683 intron CG14669 + chr3R_6_5425001 chr3R_5425001 RAL-381 1445 chr3R 5445962 5445993 chr3R 5452422 5452452 Burdock 10 6460 2.0 2.0 2.0 3.3 6490 chr3R 5445962 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_10_5445001 chr3R_5445001 RAL-381 1446 chr3R 5680785 5680818 chr3R 5680868 5680902 11 84 0.0 3.0 1.5 4.4 117 chr3R 5680785 3` UTR Rab23 - chr3R 5680844 3` UTR Rab23 - chr3R 5680902 3` UTR Rab23 - chr3R_11_5680001 chr3R_5680001 RAL-381 1447 chr3R 5688784 5688814 chr3R 5688905 5688934 8 117 0.5 3.0 1.8 2.9 150 chr3R 5688784 intron plx + chr3R 5688859 intron plx + chr3R 5688934 intron plx + chr3R_8_5685001 chr3R_5685001 RAL-381 1448 chr3R 5746017 5746043 chr3R 5746258 5746284 pogo 9 240 4.0 6.0 5.0 1.5 267 chr3R 5746017 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746284 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-381 1449 chr3R 5809113 5809128 chr3R 5809363 5809378 pogo 9 250 6.0 2.0 4.0 1.8 265 chr3R 5809113 3` UTR CG11000 + chr3R 5809246 3` UTR CG11000 + chr3R 5809378 3` UTR CG11000 + chr3R_9_5805001 chr3R_5805001 RAL-381 1450 chr3R 5822381 5822413 chr3R 5823548 5823575 1360 8 1166 1.5 5.5 3.5 1.8 1194 chr3R 5822381 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-381 1451 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 10 8476 3.5 3.5 3.5 2.2 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-381 1452 chr3R 6121171 6121189 chr3R 6121389 6121407 BS 7 218 0.0 1.5 0.8 3.9 236 chr3R 6121171 intergenic not near genes chr3R 6121289 intergenic not near genes chr3R 6121407 intergenic not near genes chr3R_7_6120001 chr3R_6120001 RAL-381 1453 chr3R 6124230 6124252 chr3R 6124314 6124320 5 77 1.5 5.0 3.2 1.2 90 chr3R 6124230 3` UTR Vha14-2 + chr3R 6124275 3` UTR Vha14-2 + chr3R 6124320 3` UTR Vha14-2 + chr3R_5_6120001 chr3R_6120001 RAL-381 1454 chr3R 6158507 6158541 chr3R 6167090 6167124 Tirant 9 8578 6.0 3.5 4.8 1.6 8617 chr3R 6158507 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-381 1455 chr3R 6175172 6175207 chr3R 6182444 6182479 HMS-Beagle2 10 7268 0.0 5.0 2.5 2.9 7307 chr3R 6175172 intergenic Osi1 + chr3R 6178826 intron CR45194 + chr3R 6182479 intergenic CR45194 + chr3R_10_6175001 chr3R_6175001 RAL-381 1456 chr3R 6187739 6187765 chr3R 6195517 6195542 5 7778 19.0 8.5 13.8 0.3 7803 chr3R 6187739 intron NPFR + chr3R 6191640 intron NPFR + chr3R 6195542 intergenic NPFR + chr3R_5_6190001 chr3R_6190001 RAL-381 1457 chr3R 6206283 6206318 chr3R 6206500 6206535 BS 17 216 2.5 4.5 3.5 3.8 252 chr3R 6206283 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_17_6205001 chr3R_6205001 RAL-381 1458 chr3R 6222309 6222340 chr3R 6222387 6222421 12 80 1.5 1.5 1.5 4.8 112 chr3R 6222309 intergenic not near genes chr3R 6222365 intergenic not near genes chr3R 6222421 intergenic not near genes chr3R_12_6220001 chr3R_6220001 RAL-381 1459 chr3R 6260957 6260987 chr3R 6261056 6261070 19 93 7.5 4.5 6.0 2.7 113 chr3R 6260957 intron Osi9 + chr3R 6261014 intron Osi9 + chr3R 6261070 intron Osi9 + chr3R_19_6260001 chr3R_6260001 RAL-381 1460 chr3R 6428818 6428841 chr3R 6428920 6428943 12 101 2.0 1.5 1.8 4.3 125 chr3R 6428818 intron gpp + chr3R 6428880 intron gpp + chr3R 6428943 intron gpp + chr3R_12_6425001 chr3R_6425001 RAL-381 1461 chr3R 6461577 6461613 chr3R 6461657 6461693 8 80 2.0 2.0 2.0 2.7 116 chr3R 6461577 intergenic not near genes chr3R 6461635 intergenic not near genes chr3R 6461693 intergenic not near genes chr3R_8_6460001 chr3R_6460001 RAL-381 1462 chr3R 6479953 6479971 chr3R 6480029 6480047 4 76 2.0 2.0 2.0 1.3 94 chr3R 6479953 intron CG15186 + chr3R 6480000 intron CG15186 + chr3R 6480047 intron CG15186 + chr3R_4_6480001 chr3R_6480001 RAL-381 1463 chr3R 6523314 6523350 chr3R 6523690 6523726 12 376 1.5 0.5 1.0 6.0 412 chr3R 6523314 intergenic not near genes chr3R 6523520 intergenic not near genes chr3R 6523726 intergenic not near genes chr3R_12_6520001 chr3R_6520001 RAL-381 1464 chr3R 6532111 6532141 chr3R 6532485 6532515 8 374 1.5 2.5 2.0 2.7 404 chr3R 6532111 intron dpr11 - chr3R 6532313 intron dpr11 - chr3R 6532515 intron dpr11 - chr3R_8_6530001 chr3R_6530001 RAL-381 1465 chr3R 6639909 6639931 chr3R 6639987 6640009 6 78 4.5 0.0 2.2 1.9 100 chr3R 6639909 intergenic not near genes chr3R 6639959 intergenic not near genes chr3R 6640009 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-381 1466 chr3R 6689337 6689368 chr3R 6689419 6689450 11 82 6.5 1.5 4.0 2.2 113 chr3R 6689337 intergenic Ccp84Af - chr3R 6689394 intergenic Ccp84Af - chr3R 6689450 intergenic Ccp84Af - chr3R_11_6685001 chr3R_6685001 RAL-381 1467 chr3R 6693978 6694015 chr3R 6694072 6694109 7 94 1.5 1.5 1.5 2.8 131 chr3R 6693978 intergenic Ccp84Ad + chr3R 6694044 intergenic not near genes chr3R 6694109 intergenic not near genes chr3R_7_6690001 chr3R_6690001 RAL-381 1468 chr3R 6705689 6705722 chr3R 6705913 6705942 4 223 0.0 3.0 1.5 1.6 253 chr3R 6705689 intergenic not near genes chr3R 6705816 intergenic not near genes chr3R 6705942 intergenic not near genes chr3R_4_6705001 chr3R_6705001 RAL-381 1469 chr3R 6725159 6725192 chr3R 6725294 6725316 12 132 3.0 5.5 4.2 2.3 157 chr3R 6725159 intron pb - chr3R 6725238 intron pb - chr3R 6725316 intron pb - chr3R_12_6725001 chr3R_6725001 RAL-381 1470 chr3R 6737497 6737529 chr3R 6739284 6739315 Doc 6 1782 3.5 2.5 3.0 1.5 1818 chr3R 6737497 intron pb - chr3R 6738406 intron pb - chr3R 6739315 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-381 1471 chr3R 6828025 6828039 chr3R 6828101 6828115 4 74 1.5 2.5 2.0 1.3 90 chr3R 6828025 intron Scr - chr3R 6828070 intron Scr - chr3R 6828115 intron Scr - chr3R_4_6825001 chr3R_6825001 RAL-381 1472 chr3R 6862222 6862237 chr3R 6862309 6862324 6 86 4.5 2.5 3.5 1.3 102 chr3R 6862222 intergenic not near genes chr3R 6862273 intergenic not near genes chr3R 6862324 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-381 1473 chr3R 6912101 6912131 chr3R 6912212 6912242 7 109 2.5 1.0 1.8 2.5 141 chr3R 6912101 intron Antp - chr3R 6912172 intron Antp - chr3R 6912242 intron Antp - chr3R_7_6910001 chr3R_6910001 RAL-381 1474 chr3R 6923583 6923596 chr3R 6923670 6923683 7 87 4.0 2.0 3.0 1.8 100 chr3R 6923583 intron Antp - chr3R 6923633 intron Antp - chr3R 6923683 intron Antp - chr3R_7_6920001 chr3R_6920001 RAL-381 1475 chr3R 6961185 6961205 chr3R 6961263 6961284 6 79 6.0 5.0 5.5 0.9 99 chr3R 6961185 intron Antp - chr3R 6961234 intron Antp - chr3R 6961284 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-381 1476 chr3R 6989938 6989962 chr3R 6990077 6990101 10 138 3.5 4.5 4.0 2.0 163 chr3R 6989938 intron Antp - chr3R 6990020 intron Antp - chr3R 6990101 intron Antp - chr3R_10_6990001 chr3R_6990001 RAL-381 1477 chr3R 7103283 7103319 chr3R 7103359 7103374 16 71 5.0 3.0 4.0 3.2 91 chr3R 7103283 intron Alh - chr3R 7103328 intron Alh - chr3R 7103374 intron Alh - chr3R_16_7100001 chr3R_7100001 RAL-381 1478 chr3R 7109104 7109124 chr3R 7109187 7109207 6 83 4.0 6.5 5.2 1.0 103 chr3R 7109104 intron Alh - chr3R 7109156 intron Alh - chr3R 7109207 intron Alh - chr3R_6_7105001 chr3R_7105001 RAL-381 1479 chr3R 7163115 7163147 chr3R 7163196 7163213 5 75 3.5 4.0 3.8 1.0 98 chr3R 7163115 intron sas + chr3R 7163164 intron sas + chr3R 7163213 intron sas + chr3R_5_7160001 chr3R_7160001 RAL-381 1480 chr3R 7187739 7187747 chr3R 7187827 7187835 4 88 2.5 6.5 4.5 0.7 96 chr3R 7187739 intron lap + chr3R 7187787 intron lap + chr3R 7187835 intron lap + chr3R_4_7185001 chr3R_7185001 RAL-381 1481 chr3R 7217457 7217488 chr3R 7217678 7217709 7 221 3.0 2.5 2.8 1.8 252 chr3R 7217457 intergenic CG14605 -,CG14606 - chr3R 7217583 intergenic CG14605 -,CG14606 - chr3R 7217709 3` UTR CG14605 - chr3R_7_7215001 chr3R_7215001 RAL-381 1482 chr3R 7269920 7269947 chr3R 7270014 7270041 6 94 2.0 0.5 1.2 2.7 121 chr3R 7269920 3` UTR Syt4 + chr3R 7269980 3` UTR Syt4 + chr3R 7270041 3` UTR Syt4 + chr3R_6_7265001 chr3R_7265001 RAL-381 1483 chr3R 7302295 7302325 chr3R 7302387 7302417 6 92 2.5 3.5 3.0 1.5 122 chr3R 7302295 intron rn - chr3R 7302356 intron rn - chr3R 7302417 intron rn - chr3R_6_7300001 chr3R_7300001 RAL-381 1484 chr3R 7481830 7481860 chr3R 7481908 7481938 4 77 2.5 3.0 2.8 1.1 108 chr3R 7481830 intergenic not near genes chr3R 7481884 intergenic not near genes chr3R 7481938 intergenic not near genes chr3R_4_7480001 chr3R_7480001 RAL-381 1485 chr3R 7548604 7548634 chr3R 7548683 7548713 7 77 2.5 1.5 2.0 2.3 109 chr3R 7548604 intron alpha-Est1 - chr3R 7548658 intron alpha-Est1 - chr3R 7548713 intron alpha-Est1 - chr3R_7_7545001 chr3R_7545001 RAL-381 1486 chr3R 7556937 7556965 chr3R 7557030 7557058 9 92 3.5 3.0 3.2 2.1 121 chr3R 7556937 intergenic not near genes chr3R 7556998 intergenic not near genes chr3R 7557058 intergenic not near genes chr3R_9_7555001 chr3R_7555001 RAL-381 1487 chr3R 7621549 7621552 chr3R 7621639 7621642 4 90 2.5 6.0 4.2 0.8 93 chr3R 7621549 intron CG34127 - chr3R 7621596 intron CG34127 - chr3R 7621642 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-381 1488 chr3R 7677930 7677944 chr3R 7678031 7678043 9 108 2.0 3.5 2.8 2.4 113 chr3R 7677930 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678043 intron Nlg1 + chr3R_9_7675001 chr3R_7675001 RAL-381 1489 chr3R 7694584 7694608 chr3R 7713645 7713669 invader3 4 19061 1.0 2.5 1.8 1.4 19085 chr3R 7694584 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713669 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-381 1490 chr3R 7729467 7729499 chr3R 7737405 7737437 Stalker2 10 7936 1.5 3.5 2.5 2.9 7970 chr3R 7729467 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_10_7730001 chr3R_7730001 RAL-381 1491 chr3R 7884678 7884701 chr3R 7884743 7884751 11 67 4.5 3.5 4.0 2.2 73 chr3R 7884678 intron CG17816 - chr3R 7884714 intron CG17816 - chr3R 7884751 intron CG17816 - chr3R_11_7880001 chr3R_7880001 RAL-381 1492 chr3R 7973315 7973342 chr3R 7974377 7974404 1360 8 1062 0.5 2.0 1.2 3.6 1089 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974404 intergenic CD98hc - chr3R_8_7970001 chr3R_7970001 RAL-381 1493 chr3R 8094416 8094434 chr3R 8099721 8099739 Transpac 5 5305 3.5 2.0 2.8 1.3 5323 chr3R 8094416 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099739 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-381 1494 chr3R 8101765 8101787 chr3R 8104849 8104871 G2 6 3084 3.5 4.5 4.0 1.2 3106 chr3R 8101765 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104871 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-381 1495 chr3R 8126304 8126319 chr3R 8126389 8126404 6 85 2.0 1.5 1.8 2.1 100 chr3R 8126304 intron CG9667 - chr3R 8126354 5` UTR CG9667 - chr3R 8126404 intergenic CG9667 -,Gie + chr3R_6_8125001 chr3R_8125001 RAL-381 1496 chr3R 8207563 8207575 chr3R 8208406 8208419 F-element 4 844 5.0 7.5 6.2 0.6 856 chr3R 8207563 intergenic not near genes chr3R 8207991 intergenic not near genes chr3R 8208419 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-381 1497 chr3R 8339246 8339246 chr3R 21907534 21907535 11 13568289 22.5 32.0 27.2 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-381 1498 chr3R 8339247 8339247 chr3R 21907534 21907536 10 13568288 23.0 32.0 27.5 0.4 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-381 1499 chr3R 8393591 8393604 chr3R 8393658 8393688 11 76 1.5 1.5 1.5 4.4 97 chr3R 8393591 intron CG45263 - chr3R 8393640 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_11_8390001 chr3R_8390001 RAL-381 1500 chr3R 8403012 8403035 chr3R 8412178 8412189 roo 9 9162 5.5 3.5 4.5 1.6 9177 chr3R 8403012 intron CG45263 - chr3R 8407600 intron CG45263 - chr3R 8412189 intron CG45263 - chr3R_9_8405001 chr3R_8405001 RAL-381 1501 chr3R 8403036 8403041 chr3R 8412177 8412200 roo 5 9158 4.0 3.5 3.8 1.0 9164 chr3R 8403036 intron CG45263 - chr3R 8407618 intron CG45263 - chr3R 8412200 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-381 1502 chr3R 8482892 8482929 chr3R 8482968 8482999 9 73 3.5 4.0 3.8 1.9 107 chr3R 8482892 intergenic not near genes chr3R 8482946 intergenic not near genes chr3R 8482999 intergenic not near genes chr3R_9_8480001 chr3R_8480001 RAL-381 1503 chr3R 8549542 8549575 chr3R 8549620 8549649 5 76 3.0 0.0 1.5 2.0 107 chr3R 8549542 intergenic not near genes chr3R 8549596 intergenic not near genes chr3R 8549649 intergenic not near genes chr3R_5_8545001 chr3R_8545001 RAL-381 1504 chr3R 8552367 8552400 chr3R 8552447 8552472 9 77 2.5 4.0 3.2 2.1 105 chr3R 8552367 intergenic Or85d + chr3R 8552420 intergenic Or85d + chr3R 8552472 intergenic Or85d + chr3R_9_8550001 chr3R_8550001 RAL-381 1505 chr3R 8570477 8570511 chr3R 8575113 8575147 HMS-Beagle 19 4635 4.0 5.5 4.8 3.3 4670 chr3R 8570477 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_19_8570001 chr3R_8570001 RAL-381 1506 chr3R 8580452 8580461 chr3R 8580694 8580703 4 242 2.0 1.5 1.8 1.4 251 chr3R 8580452 intron 5-HT2B + chr3R 8580578 intron 5-HT2B + chr3R 8580703 intron 5-HT2B + chr3R_4_8580001 chr3R_8580001 RAL-381 1507 chr3R 8601770 8601797 chr3R 8610922 8610950 roo 17 9151 6.5 4.0 5.2 2.7 9180 chr3R 8601770 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_17_8605001 chr3R_8605001 RAL-381 1508 chr3R 8621542 8621560 chr3R 8621619 8621633 6 76 4.5 5.0 4.8 1.0 91 chr3R 8621542 intron 5-HT2B + chr3R 8621588 intron 5-HT2B + chr3R 8621633 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-381 1509 chr3R 8630907 8630936 chr3R 8631013 8631042 11 104 6.0 6.0 6.0 1.6 135 chr3R 8630907 intergenic not near genes chr3R 8630974 intergenic not near genes chr3R 8631042 intergenic not near genes chr3R_11_8630001 chr3R_8630001 RAL-381 1510 chr3R 8707354 8707384 chr3R 8709795 8709825 jockey 11 2440 6.0 8.0 7.0 1.4 2471 chr3R 8707354 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-381 1511 chr3R 8798650 8798674 chr3R 8798733 8798757 4 83 3.5 2.0 2.8 1.1 107 chr3R 8798650 intron,intron Pif1A -,Pif1B - chr3R 8798704 intron,intron Pif1A -,Pif1B - chr3R 8798757 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-381 1512 chr3R 8917895 8917909 chr3R 8917975 8917989 4 80 2.0 7.0 4.5 0.7 94 chr3R 8917895 intron pyd - chr3R 8917942 intron pyd - chr3R 8917989 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-381 1513 chr3R 8971745 8971776 chr3R 8971832 8971861 6 86 6.5 3.5 5.0 1.0 116 chr3R 8971745 intergenic not near genes chr3R 8971803 intergenic not near genes chr3R 8971861 intergenic not near genes chr3R_6_8970001 chr3R_8970001 RAL-381 1514 chr3R 9036717 9036728 chr3R 9036810 9036824 5 95 0.5 2.5 1.5 2.0 107 chr3R 9036717 intron neur - chr3R 9036770 intron neur - chr3R 9036824 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-381 1515 chr3R 9082045 9082065 chr3R 9082139 9082159 12 92 2.0 3.0 2.5 3.4 114 chr3R 9082045 intron pum - chr3R 9082102 intron pum - chr3R 9082159 intron pum - chr3R_12_9080001 chr3R_9080001 RAL-381 1516 chr3R 9087315 9087345 chr3R 9087394 9087424 15 79 4.0 4.0 4.0 3.0 109 chr3R 9087315 intron pum - chr3R 9087370 intron pum - chr3R 9087424 intron pum - chr3R_15_9085001 chr3R_9085001 RAL-381 1517 chr3R 9101839 9101868 chr3R 9101937 9101966 7 98 2.0 6.0 4.0 1.4 127 chr3R 9101839 intron pum - chr3R 9101902 intron pum - chr3R 9101966 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-381 1518 chr3R 9108870 9108881 chr3R 9108946 9108957 5 76 3.0 3.0 3.0 1.2 87 chr3R 9108870 intron pum - chr3R 9108914 intron pum - chr3R 9108957 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-381 1519 chr3R 9141148 9141165 chr3R 9141231 9141249 5 84 2.5 7.0 4.8 0.9 101 chr3R 9141148 intron pum - chr3R 9141198 intron pum - chr3R 9141249 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-381 1520 chr3R 9197755 9197789 chr3R 9197842 9197876 10 87 2.0 1.0 1.5 4.0 121 chr3R 9197755 intron pum - chr3R 9197816 intron pum - chr3R 9197876 intron pum - chr3R_10_9195001 chr3R_9195001 RAL-381 1521 chr3R 9260238 9260269 chr3R 9260325 9260356 6 86 5.0 1.0 3.0 1.5 118 chr3R 9260238 exon Ibf1 + chr3R 9260297 3` UTR Ibf1 + chr3R 9260356 3` UTR Ibf1 + chr3R_6_9260001 chr3R_9260001 RAL-381 1522 chr3R 9278787 9278810 chr3R 9284047 9284047 Rt1a 15 5258 10.0 8.0 9.0 1.5 5260 chr3R 9278787 intergenic not near genes chr3R 9281417 intergenic not near genes chr3R 9284047 intergenic not near genes chr3R_15_9280001 chr3R_9280001 RAL-381 1523 chr3R 9319580 9319605 chr3R 9320015 9320040 jockey 9 434 3.0 4.5 3.8 1.9 460 chr3R 9319580 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320040 intron CG8861 - chr3R_9_9315001 chr3R_9315001 RAL-381 1524 chr3R 9382817 9382849 chr3R 9382942 9382974 13 124 6.0 4.0 5.0 2.2 157 chr3R 9382817 intron FER - chr3R 9382896 intron FER - chr3R 9382974 intron FER - chr3R_13_9380001 chr3R_9380001 RAL-381 1525 chr3R 9438989 9438996 chr3R 9439098 9439105 4 109 5.0 1.0 3.0 1.0 116 chr3R 9438989 intron ps + chr3R 9439047 intron ps + chr3R 9439105 intron ps + chr3R_4_9435001 chr3R_9435001 RAL-381 1526 chr3R 9586697 9586716 chr3R 9586789 9586808 6 91 3.5 2.0 2.8 1.6 111 chr3R 9586697 intergenic CG8301 +,P58IPK + chr3R 9586752 intergenic CG8301 +,P58IPK + chr3R 9586808 intergenic P58IPK +,CG8301 + chr3R_6_9585001 chr3R_9585001 RAL-381 1527 chr3R 9601463 9601493 chr3R 9601580 9601611 6 117 2.5 1.5 2.0 2.0 148 chr3R 9601463 intron CG8312 + chr3R 9601537 intron CG8312 + chr3R 9601611 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-381 1528 chr3R 9611879 9611901 chr3R 9611960 9611983 4 80 1.5 0.0 0.8 2.2 104 chr3R 9611879 intron CG8312 + chr3R 9611931 intron CG8312 + chr3R 9611983 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-381 1529 chr3R 10073773 10073804 chr3R 10073882 10073913 6 109 2.5 4.5 3.5 1.3 140 chr3R 10073773 intergenic nerfin-2 +,CG5361 - chr3R 10073843 3` UTR CG5361 - chr3R 10073913 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-381 1530 chr3R 10231781 10231794 chr3R 10237358 10237370 mdg3 4 5577 2.5 2.5 2.5 1.1 5589 chr3R 10231781 intron CG42795 + chr3R 10234576 intron CG42795 + chr3R 10237370 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-381 1531 chr3R 10239164 10239176 chr3R 10239246 10239258 7 82 3.5 2.5 3.0 1.8 94 chr3R 10239164 intron CG42795 + chr3R 10239211 intron CG42795 + chr3R 10239258 intron CG42795 + chr3R_7_10235001 chr3R_10235001 RAL-381 1532 chr3R 10277131 10277163 chr3R 10277211 10277243 13 80 2.5 3.0 2.8 3.4 112 chr3R 10277131 intron CG43143 + chr3R 10277187 intron CG43143 + chr3R 10277243 intron CG43143 + chr3R_13_10275001 chr3R_10275001 RAL-381 1533 chr3R 10430674 10430701 chr3R 10430763 10430790 9 89 4.0 5.0 4.5 1.6 116 chr3R 10430674 intergenic not near genes chr3R 10430732 intergenic not near genes chr3R 10430790 intergenic not near genes chr3R_9_10430001 chr3R_10430001 RAL-381 1534 chr3R 10531869 10531894 chr3R 10531950 10531975 10 81 4.5 1.5 3.0 2.5 106 chr3R 10531869 intron hth - chr3R 10531922 intron hth - chr3R 10531975 intron hth - chr3R_10_10530001 chr3R_10530001 RAL-381 1535 chr3R 10723762 10723791 chr3R 10723854 10723882 11 92 3.5 1.5 2.5 3.1 120 chr3R 10723762 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723882 intergenic not near genes chr3R_11_10720001 chr3R_10720001 RAL-381 1536 chr3R 10727641 10727678 chr3R 10727721 10727748 16 78 9.0 3.5 6.2 2.2 107 chr3R 10727641 intergenic not near genes chr3R 10727694 intergenic not near genes chr3R 10727748 intergenic not near genes chr3R_16_10725001 chr3R_10725001 RAL-381 1537 chr3R 10732325 10732346 chr3R 10733197 10733218 10 872 2.0 2.5 2.2 3.1 893 chr3R 10732325 intergenic not near genes chr3R 10732772 intergenic not near genes chr3R 10733218 intergenic not near genes chr3R_10_10730001 chr3R_10730001 RAL-381 1538 chr3R 10745424 10745452 chr3R 10745511 10745539 7 86 2.5 3.0 2.8 1.8 115 chr3R 10745424 intron TkR86C - chr3R 10745482 intron TkR86C - chr3R 10745539 intron TkR86C - chr3R_7_10745001 chr3R_10745001 RAL-381 1539 chr3R 10804185 10804191 chr3R 10811717 10811723 17.6 4 7532 1.5 6.5 4.0 0.8 7538 chr3R 10804185 intergenic CG14692 - chr3R 10807954 intergenic not near genes chr3R 10811723 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-381 1540 chr3R 10868590 10868618 chr3R 10868668 10868695 5 78 3.5 4.0 3.8 1.0 105 chr3R 10868590 5` UTR SelR - chr3R 10868642 5` UTR SelR - chr3R 10868695 intergenic Tsp86D +,SelR - chr3R_5_10865001 chr3R_10865001 RAL-381 1541 chr3R 10886872 10886898 chr3R 10886952 10886978 6 80 2.0 5.0 3.5 1.3 106 chr3R 10886872 intron Leash + chr3R 10886925 intron Leash + chr3R 10886978 intron Leash + chr3R_6_10885001 chr3R_10885001 RAL-381 1542 chr3R 10919692 10919715 chr3R 10919764 10919792 11 77 4.0 1.0 2.5 3.1 100 chr3R 10919692 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919792 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-381 1543 chr3R 10987280 10987308 chr3R 10988145 10988175 10 867 2.0 8.0 5.0 1.7 895 chr3R 10987280 intron CG34114 + chr3R 10987728 intron CG34114 + chr3R 10988175 intron CG34114 + chr3R_10_10985001 chr3R_10985001 RAL-381 1544 chr3R 11088669 11088698 chr3R 11088761 11088790 4 92 1.5 0.0 0.8 2.2 121 chr3R 11088669 exon CG43449 + chr3R 11088730 3` UTR CG43449 + chr3R 11088790 3` UTR CG43449 + chr3R_4_11085001 chr3R_11085001 RAL-381 1545 chr3R 11090839 11090876 chr3R 11090927 11090964 18 86 5.0 9.0 7.0 2.2 125 chr3R 11090839 intergenic not near genes chr3R 11090902 intergenic not near genes chr3R 11090964 intergenic not near genes chr3R_18_11090001 chr3R_11090001 RAL-381 1546 chr3R 11130116 11130138 chr3R 11130205 11130227 5 89 4.5 0.0 2.2 1.6 111 chr3R 11130116 intergenic not near genes chr3R 11130172 intergenic not near genes chr3R 11130227 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-381 1547 chr3R 11174606 11174613 chr3R 11175320 11175327 5 714 32.0 29.0 30.5 0.2 721 chr3R 11174606 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_5_11170001 chr3R_11170001 RAL-381 1548 chr3R 11294466 11294499 chr3R 11294777 11294810 14 311 4.0 3.5 3.8 2.9 344 chr3R 11294466 intron CR31386 - chr3R 11294638 intron CR31386 - chr3R 11294810 intron CR31386 - chr3R_14_11290001 chr3R_11290001 RAL-381 1549 chr3R 11307199 11307222 chr3R 11307285 11307309 5 81 3.0 7.5 5.2 0.8 110 chr3R 11307199 intergenic not near genes chr3R 11307254 intergenic not near genes chr3R 11307309 intergenic not near genes chr3R_5_11305001 chr3R_11305001 RAL-381 1550 chr3R 11379234 11379269 chr3R 11388389 11388424 roo 8 9155 4.5 2.0 3.2 1.9 9190 chr3R 11379234 intron pros + chr3R 11383829 intron pros + chr3R 11388424 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-381 1551 chr3R 11476951 11476969 chr3R 11477053 11477071 7 102 2.0 2.0 2.0 2.3 120 chr3R 11476951 intergenic not near genes chr3R 11477011 intergenic not near genes chr3R 11477071 intergenic not near genes chr3R_7_11475001 chr3R_11475001 RAL-381 1552 chr3R 11514144 11514180 chr3R 11515212 11515248 12 1066 3.5 5.0 4.2 2.3 1104 chr3R 11514144 intergenic not near genes chr3R 11514696 intergenic not near genes chr3R 11515248 intergenic not near genes chr3R_12_11510001 chr3R_11510001 RAL-381 1553 chr3R 11633341 11633363 chr3R 11633416 11633439 4 76 0.5 1.0 0.8 2.2 98 chr3R 11633341 3` UTR Csk - chr3R 11633390 3` UTR Csk - chr3R 11633439 3` UTR Csk - chr3R_4_11630001 chr3R_11630001 RAL-381 1554 chr3R 11665935 11665955 chr3R 11666086 11666106 4 151 0.5 1.0 0.8 2.2 171 chr3R 11665935 intron CG42327 + chr3R 11666020 intron CG42327 + chr3R 11666106 intron CG42327 + chr3R_4_11665001 chr3R_11665001 RAL-381 1555 chr3R 11694728 11694755 chr3R 11694821 11694834 10 91 1.0 4.0 2.5 2.9 106 chr3R 11694728 intergenic Fer3 - chr3R 11694781 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_10_11690001 chr3R_11690001 RAL-381 1556 chr3R 11734164 11734185 chr3R 11734283 11734304 8 119 6.0 4.0 5.0 1.3 140 chr3R 11734164 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734304 intergenic not near genes chr3R_8_11730001 chr3R_11730001 RAL-381 1557 chr3R 11763934 11763946 chr3R 11764005 11764026 7 75 3.5 7.5 5.5 1.1 92 chr3R 11763934 5` UTR Lk6 - chr3R 11763980 5` UTR Lk6 - chr3R 11764026 5` UTR Lk6 - chr3R_7_11760001 chr3R_11760001 RAL-381 1558 chr3R 11841062 11841091 chr3R 11846253 11846279 BS 11 5190 4.0 6.5 5.2 1.8 5217 chr3R 11841062 intron CG6959 - chr3R 11843670 intron CG6959 - chr3R 11846279 intron CG6959 - chr3R_11_11840001 chr3R_11840001 RAL-381 1559 chr3R 11853439 11853470 chr3R 11853588 11853617 7 147 2.0 3.5 2.8 1.8 178 chr3R 11853439 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853617 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-381 1560 chr3R 11853768 11853802 chr3R 11853872 11853907 12 105 2.0 4.0 3.0 3.0 139 chr3R 11853768 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853907 intron CG6959 - chr3R_12_11850001 chr3R_11850001 RAL-381 1561 chr3R 11914392 11914404 chr3R 11914475 11914488 8 83 5.5 9.5 7.5 0.9 96 chr3R 11914392 intron Cad87A - chr3R 11914440 intron Cad87A - chr3R 11914488 intron Cad87A - chr3R_8_11910001 chr3R_11910001 RAL-381 1562 chr3R 11945384 11945401 chr3R 11945482 11945499 6 98 2.0 2.5 2.2 1.9 115 chr3R 11945384 intron Cad87A - chr3R 11945442 intron Cad87A - chr3R 11945499 intron Cad87A - chr3R_6_11945001 chr3R_11945001 RAL-381 1563 chr3R 12022886 12022907 chr3R 12025063 12025084 pogo 6 2177 6.0 5.0 5.5 0.9 2198 chr3R 12022886 intergenic not near genes chr3R 12023985 intergenic not near genes chr3R 12025084 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-381 1564 chr3R 12081996 12082030 chr3R 12082072 12082106 13 76 1.5 2.5 2.0 4.3 110 chr3R 12081996 intron CG14741 - chr3R 12082051 intron CG14741 - chr3R 12082106 intron CG14741 - chr3R_13_12080001 chr3R_12080001 RAL-381 1565 chr3R 12111903 12111917 chr3R 12111979 12111993 9 75 0.5 5.5 3.0 2.2 90 chr3R 12111903 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12111993 intergenic not near genes chr3R_9_12110001 chr3R_12110001 RAL-381 1566 chr3R 12154028 12154062 chr3R 12154477 12154489 10 435 13.0 17.5 15.2 0.6 461 chr3R 12154028 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154489 intron dpr15 - chr3R_10_12150001 chr3R_12150001 RAL-381 1567 chr3R 12175226 12175237 chr3R 12175306 12175316 6 80 5.5 0.0 2.8 1.6 90 chr3R 12175226 intergenic not near genes chr3R 12175271 intergenic not near genes chr3R 12175316 intergenic not near genes chr3R_6_12175001 chr3R_12175001 RAL-381 1568 chr3R 12183187 12183204 chr3R 12183273 12183290 12 86 3.5 7.0 5.2 1.9 103 chr3R 12183187 intergenic not near genes chr3R 12183238 intergenic not near genes chr3R 12183290 intergenic not near genes chr3R_12_12180001 chr3R_12180001 RAL-381 1569 chr3R 12274046 12274079 chr3R 12274132 12274139 10 75 3.0 1.5 2.2 3.1 93 chr3R 12274046 intron svp + chr3R 12274092 intron svp + chr3R 12274139 intron svp + chr3R_10_12270001 chr3R_12270001 RAL-381 1570 chr3R 12522352 12522387 chr3R 12522438 12522464 10 81 4.5 3.5 4.0 2.0 112 chr3R 12522352 5` UTR Octbeta3R - chr3R 12522408 5` UTR Octbeta3R - chr3R 12522464 5` UTR Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-381 1571 chr3R 12579913 12579940 chr3R 12580002 12580029 15 88 2.5 2.5 2.5 4.3 116 chr3R 12579913 intron Octbeta2R - chr3R 12579971 intron Octbeta2R - chr3R 12580029 intron Octbeta2R - chr3R_15_12575001 chr3R_12575001 RAL-381 1572 chr3R 12666765 12666791 chr3R 12666892 12666898 8 124 9.5 3.5 6.5 1.1 133 chr3R 12666765 intron CG14395 + chr3R 12666832 intron CG14395 + chr3R 12666898 intron CG14395 + chr3R_8_12665001 chr3R_12665001 RAL-381 1573 chr3R 12733475 12733508 chr3R 12733552 12733585 11 74 4.0 2.0 3.0 2.8 110 chr3R 12733475 intergenic not near genes chr3R 12733530 intergenic not near genes chr3R 12733585 intergenic not near genes chr3R_11_12730001 chr3R_12730001 RAL-381 1574 chr3R 12792104 12792130 chr3R 12792245 12792271 7 141 0.0 3.0 1.5 2.8 167 chr3R 12792104 intergenic not near genes chr3R 12792188 intergenic not near genes chr3R 12792271 intergenic not near genes chr3R_7_12790001 chr3R_12790001 RAL-381 1575 chr3R 12880117 12880147 chr3R 12880192 12880212 10 74 4.0 4.0 4.0 2.0 95 chr3R 12880117 intergenic not near genes chr3R 12880164 intergenic not near genes chr3R 12880212 intergenic not near genes chr3R_10_12880001 chr3R_12880001 RAL-381 1576 chr3R 12899388 12899414 chr3R 12899480 12899506 10 92 4.0 3.0 3.5 2.2 118 chr3R 12899388 intergenic not near genes chr3R 12899447 intergenic not near genes chr3R 12899506 intergenic not near genes chr3R_10_12895001 chr3R_12895001 RAL-381 1577 chr3R 12902381 12902414 chr3R 12902462 12902495 13 80 4.0 2.0 3.0 3.2 114 chr3R 12902381 intergenic not near genes chr3R 12902438 intergenic not near genes chr3R 12902495 intergenic not near genes chr3R_13_12900001 chr3R_12900001 RAL-381 1578 chr3R 12920156 12920185 chr3R 12925357 12925367 copia 10 5197 2.0 5.0 3.5 2.2 5211 chr3R 12920156 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925367 intron beat-Vb + chr3R_10_12920001 chr3R_12920001 RAL-381 1579 chr3R 12937490 12937521 chr3R 12937841 12937872 11 351 4.0 2.5 3.2 2.6 382 chr3R 12937490 intergenic not near genes chr3R 12937681 intergenic not near genes chr3R 12937872 intergenic not near genes chr3R_11_12935001 chr3R_12935001 RAL-381 1580 chr3R 13120772 13120801 chr3R 13120849 13120878 12 74 1.0 4.0 2.5 3.4 106 chr3R 13120772 intron timeout + chr3R 13120825 intron timeout + chr3R 13120878 intron timeout + chr3R_12_13120001 chr3R_13120001 RAL-381 1581 chr3R 13135826 13135859 chr3R 13138001 13138034 pogo 14 2175 2.5 3.5 3.0 3.5 2208 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138034 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_14_13135001 chr3R_13135001 RAL-381 1582 chr3R 13143032 13143065 chr3R 13148609 13148642 mdg3 10 5574 5.5 1.5 3.5 2.2 5610 chr3R 13143032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13145001 chr3R_13145001 RAL-381 1583 chr3R 13319152 13319186 chr3R 13319355 13319388 11 201 3.5 6.0 4.8 1.9 236 chr3R 13319152 exon CG45080 - chr3R 13319270 5` UTR CG45080 - chr3R 13319388 intergenic CG45080 - chr3R_11_13315001 chr3R_13315001 RAL-381 1584 chr3R 13379375 13379393 chr3R 13379457 13379475 15 80 8.5 4.5 6.5 2.0 100 chr3R 13379375 intron CG9813 - chr3R 13379425 intron CG9813 - chr3R 13379475 intron CG9813 - chr3R_15_13375001 chr3R_13375001 RAL-381 1585 chr3R 13379396 13379404 chr3R 13379454 13379486 10 74 5.5 4.0 4.8 1.7 90 chr3R 13379396 intron CG9813 - chr3R 13379441 intron CG9813 - chr3R 13379486 intron CG9813 - chr3R_10_13375001 chr3R_13375001 RAL-381 1586 chr3R 13418665 13418678 chr3R 13418741 13418754 4 76 7.0 0.5 3.8 0.8 89 chr3R 13418665 intergenic not near genes chr3R 13418710 intergenic not near genes chr3R 13418754 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-381 1587 chr3R 13424143 13424165 chr3R 13424235 13424260 9 94 27.0 38.5 32.8 0.3 117 chr3R 13424143 intergenic not near genes chr3R 13424202 intergenic not near genes chr3R 13424260 intergenic not near genes chr3R_9_13420001 chr3R_13420001 RAL-381 1588 chr3R 13491219 13491230 chr3R 13491294 13491306 4 76 9.0 1.5 5.2 0.6 87 chr3R 13491219 intergenic not near genes chr3R 13491262 intergenic not near genes chr3R 13491306 intergenic not near genes chr3R_4_13490001 chr3R_13490001 RAL-381 1589 chr3R 13517224 13517258 chr3R 13520041 13520043 jockey 9 2813 0.5 2.5 1.5 3.6 2819 chr3R 13517224 intergenic not near genes chr3R 13518634 intergenic not near genes chr3R 13520043 intergenic not near genes chr3R_9_13515001 chr3R_13515001 RAL-381 1590 chr3R 13556993 13557004 chr3R 13557069 13557080 4 76 5.5 4.5 5.0 0.7 87 chr3R 13556993 intergenic not near genes chr3R 13557036 intergenic not near genes chr3R 13557080 intergenic not near genes chr3R_4_13555001 chr3R_13555001 RAL-381 1591 chr3R 13603057 13603076 chr3R 13603145 13603167 4 90 4.5 2.5 3.5 0.9 110 chr3R 13603057 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603167 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-381 1592 chr3R 13617675 13617712 chr3R 13617782 13617818 5 104 0.5 1.0 0.8 2.8 143 chr3R 13617675 intergenic CR45680 - chr3R 13617746 intergenic CR45680 - chr3R 13617818 3` UTR CR45680 - chr3R_5_13615001 chr3R_13615001 RAL-381 1593 chr3R 13693028 13693028 chr3R 21907534 21907536 17 8214507 9.5 32.0 20.8 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_17_17800001 chr3R_17800001 RAL-381 1594 chr3R 14003305 14003337 chr3R 14003499 14003531 4 193 1.5 3.5 2.5 1.1 226 chr3R 14003305 intron rdx - chr3R 14003418 intron rdx - chr3R 14003531 intron rdx - chr3R_4_14000001 chr3R_14000001 RAL-381 1595 chr3R 14067141 14067149 chr3R 14067220 14067228 5 79 5.5 2.5 4.0 1.0 87 chr3R 14067141 exon foxo + chr3R 14067184 intron foxo + chr3R 14067228 intron foxo + chr3R_5_14065001 chr3R_14065001 RAL-381 1596 chr3R 14180810 14180838 chr3R 14185575 14185603 F-element 7 4764 1.0 0.0 0.5 4.7 4793 chr3R 14180810 intron Dop1R1 - chr3R 14183206 intron Dop1R1 - chr3R 14185603 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-381 1597 chr3R 14211340 14211362 chr3R 14211418 14211440 8 78 2.0 2.5 2.2 2.5 100 chr3R 14211340 intron Dop1R1 - chr3R 14211390 intron Dop1R1 - chr3R 14211440 intron Dop1R1 - chr3R_8_14210001 chr3R_14210001 RAL-381 1598 chr3R 14246405 14246408 chr3R 14247889 14247904 jockey 4 1490 5.5 4.0 4.8 0.7 1499 chr3R 14246405 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247904 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-381 1599 chr3R 14246415 14246417 chr3R 14247884 14247912 jockey 4 1482 5.0 2.5 3.8 0.8 1497 chr3R 14246415 intergenic not near genes chr3R 14247164 intergenic not near genes chr3R 14247912 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-381 1600 chr3R 14278426 14278452 chr3R 14278508 14278534 5 82 1.5 3.0 2.2 1.6 108 chr3R 14278426 intron trx - chr3R 14278480 intron trx - chr3R 14278534 intron trx - chr3R_5_14275001 chr3R_14275001 RAL-381 1601 chr3R 14354819 14354828 chr3R 14354910 14354919 4 91 0.5 3.5 2.0 1.3 100 chr3R 14354819 intron NK7.1 - chr3R 14354869 intron NK7.1 - chr3R 14354919 intron NK7.1 - chr3R_4_14350001 chr3R_14350001 RAL-381 1602 chr3R 14440721 14440755 chr3R 14440797 14440831 10 76 1.5 2.0 1.8 3.6 110 chr3R 14440721 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440831 intron cv-c - chr3R_10_14440001 chr3R_14440001 RAL-381 1603 chr3R 14527401 14527414 chr3R 14527478 14527491 7 75 13.0 5.5 9.2 0.7 90 chr3R 14527401 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527491 intron Pde6 - chr3R_7_14525001 chr3R_14525001 RAL-381 1604 chr3R 14543597 14543631 chr3R 14543677 14543711 8 80 3.5 3.0 3.2 1.9 114 chr3R 14543597 intron Pde6 - chr3R 14543654 intron Pde6 - chr3R 14543711 intron Pde6 - chr3R_8_14540001 chr3R_14540001 RAL-381 1605 chr3R 14546040 14546073 chr3R 14546117 14546150 5 75 3.0 3.5 3.2 1.2 110 chr3R 14546040 intron Pde6 - chr3R 14546095 intron Pde6 - chr3R 14546150 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-381 1606 chr3R 14565699 14565729 chr3R 14565802 14565832 13 103 3.0 5.5 4.2 2.5 133 chr3R 14565699 intergenic CG14852 + chr3R 14565766 intergenic CG14852 + chr3R 14565832 intergenic CG14852 + chr3R_13_14565001 chr3R_14565001 RAL-381 1607 chr3R 14694460 14694680 chr3R 14694540 14694782 16 89 2.5 4.5 3.5 3.6 322 chr3R 14694460 intron Meltrin - chr3R 14694621 intron Meltrin - chr3R 14694782 intron Meltrin - chr3R_16_14690001 chr3R_14690001 RAL-381 1608 chr3R 14704388 14704408 chr3R 14704465 14704485 8 77 1.0 4.5 2.8 2.1 97 chr3R 14704388 intron kibra - chr3R 14704436 intron kibra - chr3R 14704485 intron kibra - chr3R_8_14700001 chr3R_14700001 RAL-381 1609 chr3R 14821634 14821642 chr3R 14821783 14821791 4 149 2.5 3.0 2.8 1.1 157 chr3R 14821634 intron btsz - chr3R 14821712 intron btsz - chr3R 14821791 intron btsz - chr3R_4_14820001 chr3R_14820001 RAL-381 1610 chr3R 14878440 14878468 chr3R 14879277 14879305 12 836 5.0 5.5 5.2 1.9 865 chr3R 14878440 intergenic not near genes chr3R 14878872 intergenic not near genes chr3R 14879305 intergenic CG3631 + chr3R_12_14875001 chr3R_14875001 RAL-381 1611 chr3R 14898476 14898504 chr3R 14898596 14898624 11 120 0.5 2.5 1.5 4.4 148 chr3R 14898476 intergenic Nup93-2 -,CG3817 + chr3R 14898550 intergenic Nup93-2 -,CG3817 + chr3R 14898624 intergenic CG3817 +,Nup93-2 - chr3R_11_14895001 chr3R_14895001 RAL-381 1612 chr3R 14923730 14923745 chr3R 14923802 14923821 9 75 1.0 8.0 4.5 1.6 91 chr3R 14923730 3` UTR CR45598 - chr3R 14923776 intergenic CR45598 - chr3R 14923821 intergenic CR45598 - chr3R_9_14920001 chr3R_14920001 RAL-381 1613 chr3R 14973604 14973611 chr3R 14974072 14974100 4 483 2.5 5.5 4.0 0.8 496 chr3R 14973604 intergenic not near genes chr3R 14973852 intergenic not near genes chr3R 14974100 intergenic not near genes chr3R_4_14970001 chr3R_14970001 RAL-381 1614 chr3R 15026330 15026347 chr3R 15026416 15026433 9 86 2.5 4.0 3.2 2.1 103 chr3R 15026330 intergenic not near genes chr3R 15026382 intergenic not near genes chr3R 15026433 intergenic not near genes chr3R_9_15025001 chr3R_15025001 RAL-381 1615 chr3R 15041402 15041418 chr3R 15045186 15045202 Doc 5 3784 0.0 2.0 1.0 2.5 3800 chr3R 15041402 intergenic not near genes chr3R 15043302 intergenic not near genes chr3R 15045202 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-381 1616 chr3R 15045519 15045551 chr3R 15045704 15045736 20 182 6.5 6.0 6.2 2.8 217 chr3R 15045519 intergenic not near genes chr3R 15045628 intergenic not near genes chr3R 15045736 intergenic not near genes chr3R_20_15045001 chr3R_15045001 RAL-381 1617 chr3R 15059467 15059478 chr3R 15059554 15059565 6 87 0.0 3.5 1.8 2.1 98 chr3R 15059467 intron dpr9 - chr3R 15059516 intron dpr9 - chr3R 15059565 intron dpr9 - chr3R_6_15055001 chr3R_15055001 RAL-381 1618 chr3R 15087405 15087434 chr3R 15087480 15087499 13 73 2.5 2.0 2.2 4.1 94 chr3R 15087405 intron CG6966 - chr3R 15087452 intron CG6966 - chr3R 15087499 intron CG6966 - chr3R_13_15085001 chr3R_15085001 RAL-381 1619 chr3R 15090630 15090633 chr3R 15093529 15093538 5 2904 17.5 12.0 14.8 0.3 2908 chr3R 15090630 intron CG6966 - chr3R 15092084 intron CG6966 - chr3R 15093538 intron CG6966 - chr3R_5_15090001 chr3R_15090001 RAL-381 1620 chr3R 15090634 15090639 chr3R 15093519 15093536 5 2895 17.0 9.5 13.2 0.4 2902 chr3R 15090634 intron CG6966 - chr3R 15092085 intron CG6966 - chr3R 15093536 intron CG6966 - chr3R_5_15090001 chr3R_15090001 RAL-381 1621 chr3R 15090591 15090615 chr3R 15094190 15094217 8 3602 19.5 35.0 27.2 0.3 3626 chr3R 15090591 intron CG6966 - chr3R 15092404 intron CG6966 - chr3R 15094217 intron CG6966 - chr3R_8_15090001 chr3R_15090001 RAL-381 1622 chr3R 15132057 15132077 chr3R 15135117 15135137 Juan 7 3059 6.0 6.5 6.2 1.0 3080 chr3R 15132057 intergenic CG42788 - chr3R 15133597 intergenic not near genes chr3R 15135137 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-381 1623 chr3R 15143924 15143954 chr3R 15144107 15144137 4 183 0.5 1.0 0.8 2.2 213 chr3R 15143924 intron GlyS - chr3R 15144030 intron GlyS - chr3R 15144137 intron GlyS - chr3R_4_15140001 chr3R_15140001 RAL-381 1624 chr3R 15162554 15162563 chr3R 15167312 15167330 F-element 5 4763 5.0 0.0 2.5 1.4 4776 chr3R 15162554 intron Gyc88E + chr3R 15164942 intron Gyc88E + chr3R 15167330 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-381 1625 chr3R 15265405 15265420 chr3R 15265490 15265505 4 85 2.5 3.5 3.0 1.0 100 chr3R 15265405 intergenic Set +,Oscp + chr3R 15265455 intergenic Oscp +,Set + chr3R 15265505 intergenic Oscp +,Set + chr3R_4_15265001 chr3R_15265001 RAL-381 1626 chr3R 15286987 15286988 chr3R 21907534 21907535 6 6620548 18.5 32.0 25.2 0.2 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-381 1627 chr3R 15302228 15302245 chr3R 15302314 15302328 5 84 3.0 3.5 3.2 1.2 100 chr3R 15302228 intron Tm1 + chr3R 15302278 intron Tm1 + chr3R 15302328 intron Tm1 + chr3R_5_15300001 chr3R_15300001 RAL-381 1628 chr3R 15516159 15516182 chr3R 15516360 15516383 8 201 2.5 4.0 3.2 1.9 224 chr3R 15516159 intergenic not near genes chr3R 15516271 intergenic not near genes chr3R 15516383 intergenic not near genes chr3R_8_15515001 chr3R_15515001 RAL-381 1629 chr3R 15594654 15594675 chr3R 15594737 15594758 6 82 0.0 3.5 1.8 2.1 104 chr3R 15594654 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594758 intergenic not near genes chr3R_6_15590001 chr3R_15590001 RAL-381 1630 chr3R 15601164 15601196 chr3R 15608686 15608718 412 12 7521 9.0 7.5 8.2 1.3 7554 chr3R 15601164 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-381 1631 chr3R 15668012 15668039 chr3R 15668100 15668128 10 89 4.0 2.5 3.2 2.4 116 chr3R 15668012 intron,5` UTR pxb +,CR43849 + chr3R 15668070 intron,5` UTR pxb +,CR43849 + chr3R 15668128 intron,5` UTR pxb +,CR43849 + chr3R_10_15665001 chr3R_15665001 RAL-381 1632 chr3R 15691195 15691325 chr3R 15691290 15691397 7 84 0.0 0.0 0.0 7.0 202 chr3R 15691195 intergenic not near genes chr3R 15691296 intergenic not near genes chr3R 15691397 intergenic not near genes chr3R_7_15690001 chr3R_15690001 RAL-381 1633 chr3R 15801081 15801083 chr3R 18210499 18210526 5 2409434 21.5 7.0 14.2 0.3 2409445 chr3R 15801081 3` UTR nsl1 + chr3R 17005804 exon Irc + chr3R 18210526 intron CG7985 + chr3R_5_17005001 chr3R_17005001 RAL-381 1634 chr3R 15878098 15878102 chr3R 15878185 15878190 4 88 2.0 3.0 2.5 1.1 92 chr3R 15878098 intergenic not near genes chr3R 15878144 intergenic not near genes chr3R 15878190 intergenic not near genes chr3R_4_15875001 chr3R_15875001 RAL-381 1635 chr3R 15878589 15878616 chr3R 15878751 15878779 16 158 4.5 7.5 6.0 2.3 190 chr3R 15878589 intergenic not near genes chr3R 15878684 intergenic not near genes chr3R 15878779 intergenic not near genes chr3R_16_15875001 chr3R_15875001 RAL-381 1636 chr3R 15891671 15891687 chr3R 15892057 15892079 5 388 1.5 5.0 3.2 1.2 408 chr3R 15891671 intron CG14877 - chr3R 15891875 intron CG14877 - chr3R 15892079 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-381 1637 chr3R 15985282 15985291 chr3R 15985362 15985370 4 79 3.0 1.0 2.0 1.3 88 chr3R 15985282 intergenic not near genes chr3R 15985326 intergenic not near genes chr3R 15985370 intergenic not near genes chr3R_4_15985001 chr3R_15985001 RAL-381 1638 chr3R 15989941 15989965 chr3R 15990018 15990042 7 77 2.0 4.0 3.0 1.8 101 chr3R 15989941 intron,intron srp +,CR44133 + chr3R 15989992 intron,intron srp +,CR44133 + chr3R 15990042 intron,intron srp +,CR44133 + chr3R_7_15985001 chr3R_15985001 RAL-381 1639 chr3R 16128441 16128469 chr3R 16128526 16128554 10 85 4.0 4.5 4.2 1.9 113 chr3R 16128441 intron Sb + chr3R 16128498 intron Sb + chr3R 16128554 intron Sb + chr3R_10_16125001 chr3R_16125001 RAL-381 1640 chr3R 16197573 16197606 chr3R 16197654 16197687 10 81 5.0 2.5 3.8 2.1 114 chr3R 16197573 3` UTR sra + chr3R 16197630 intergenic sra +,CG6126 - chr3R 16197687 intergenic sra +,CG6126 - chr3R_10_16195001 chr3R_16195001 RAL-381 1641 chr3R 16287398 16287430 chr3R 16287476 16287508 8 78 4.5 2.5 3.5 1.8 110 chr3R 16287398 intron gish + chr3R 16287453 intron gish + chr3R 16287508 intron gish + chr3R_8_16285001 chr3R_16285001 RAL-381 1642 chr3R 16472584 16472590 chr3R 16472659 16472664 4 75 14.0 9.5 11.8 0.3 80 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472664 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-381 1643 chr3R 16503137 16503168 chr3R 16504309 16504342 16 1170 4.0 3.0 3.5 3.6 1205 chr3R 16503137 5` UTR CG42342 + chr3R 16503740 intron CG42342 + chr3R 16504342 intron CG42342 + chr3R_16_16500001 chr3R_16500001 RAL-381 1644 chr3R 16552934 16552958 chr3R 16553023 16553047 10 88 2.5 3.0 2.8 2.6 113 chr3R 16552934 intron CG42342 + chr3R 16552990 intron CG42342 + chr3R 16553047 intron CG42342 + chr3R_10_16550001 chr3R_16550001 RAL-381 1645 chr3R 16589026 16589027 chr3R 30107618 30107627 4 13518602 25.0 6.0 15.5 0.2 13518601 chr3R 16589026 intergenic not near genes chr3R 23348326 exon DNApol-epsilon + chr3R 30107627 intron sima + chr3R_4_23345001 chr3R_23345001 RAL-381 1646 chr3R 16756318 16756351 chr3R 16762509 16762538 diver 18 6190 5.5 3.5 4.5 3.3 6220 chr3R 16756318 intron bxd - chr3R 16759428 intron bxd - chr3R 16762538 intron bxd - chr3R_18_16755001 chr3R_16755001 RAL-381 1647 chr3R 16849716 16849745 chr3R 16849819 16849848 13 101 2.0 3.0 2.5 3.7 132 chr3R 16849716 intron iab-8 - chr3R 16849782 intron iab-8 - chr3R 16849848 intron iab-8 - chr3R_13_16845001 chr3R_16845001 RAL-381 1648 chr3R 10451877 10451877 chr3R 16910586 16910586 4 6458709 26.5 15.5 21.0 0.2 6458709 chr3R 10451877 intergenic not near genes chr3R 13681232 exon omd - chr3R 16910586 intron iab-8 - chr3R_4_13680001 chr3R_13680001 RAL-381 1649 chr3R 17022113 17022146 chr3R 17022195 17022228 13 82 3.5 3.0 3.2 3.1 115 chr3R 17022113 intron Pxd + chr3R 17022170 intron Pxd + chr3R 17022228 intron Pxd + chr3R_13_17020001 chr3R_17020001 RAL-381 1650 chr3R 17067508 17067529 chr3R 17067591 17067612 5 83 4.5 2.5 3.5 1.1 104 chr3R 17067508 intron Dad + chr3R 17067560 intron Dad + chr3R 17067612 intron Dad + chr3R_5_17065001 chr3R_17065001 RAL-381 1651 chr3R 17115810 17115839 chr3R 17115999 17116000 15 186 1.5 4.0 2.8 3.9 190 chr3R 17115810 intron cher - chr3R 17115905 intron cher - chr3R 17116000 intron cher - chr3R_15_17115001 chr3R_17115001 RAL-381 1652 chr3R 17268674 17268702 chr3R 17268796 17268820 14 121 2.0 4.5 3.2 3.3 146 chr3R 17268674 intergenic not near genes chr3R 17268747 intergenic not near genes chr3R 17268820 intergenic not near genes chr3R_14_17265001 chr3R_17265001 RAL-381 1653 chr3R 17290452 17290469 chr3R 17290538 17290555 10 86 1.5 3.5 2.5 2.9 103 chr3R 17290452 intergenic not near genes chr3R 17290504 intergenic not near genes chr3R 17290555 intergenic not near genes chr3R_10_17290001 chr3R_17290001 RAL-381 1654 chr3R 17294661 17294670 chr3R 17295089 17295098 BS 4 428 5.0 0.0 2.5 1.1 437 chr3R 17294661 intergenic not near genes chr3R 17294880 intergenic not near genes chr3R 17295098 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-381 1655 chr3R 17346245 17346247 chr3R 21907534 21907535 9 4561289 20.0 32.0 26.0 0.3 4561290 chr3R 17346245 intron beat-IIa - chr3R 19626890 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_9_19625001 chr3R_19625001 RAL-381 1656 chr3R 17346693 17346707 chr3R 17348256 17348270 F-element 4 1563 2.0 5.0 3.5 0.9 1577 chr3R 17346693 intron beat-IIa - chr3R 17347482 intron beat-IIa - chr3R 17348270 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-381 1657 chr3R 17355489 17355520 chr3R 17355567 17355598 9 76 5.0 2.0 3.5 2.0 109 chr3R 17355489 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355598 intron beat-IIa - chr3R_9_17355001 chr3R_17355001 RAL-381 1658 chr3R 17371413 17371432 chr3R 17371478 17371508 4 68 1.0 2.5 1.8 1.4 95 chr3R 17371413 3` UTR CR44256 - chr3R 17371460 3` UTR CR44256 - chr3R 17371508 3` UTR CR44256 - chr3R_4_17370001 chr3R_17370001 RAL-381 1659 chr3R 17389053 17389054 chr3R 21907534 21907536 5 4518481 13.5 32.0 22.8 0.2 4518483 chr3R 17389053 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-381 1660 chr3R 17394439 17394466 chr3R 17394602 17394630 14 161 4.5 7.0 5.8 2.1 191 chr3R 17394439 intron CREG - chr3R 17394534 intron CREG - chr3R 17394630 5` UTR CREG - chr3R_14_17390001 chr3R_17390001 RAL-381 1661 chr3R 17463258 17463286 chr3R 17463542 17463571 7 285 3.0 2.0 2.5 2.0 313 chr3R 17463258 intergenic not near genes chr3R 17463414 intergenic not near genes chr3R 17463571 intergenic not near genes chr3R_7_17460001 chr3R_17460001 RAL-381 1662 chr3R 17470431 17470462 chr3R 17470529 17470560 10 96 1.5 3.5 2.5 2.9 129 chr3R 17470431 intergenic not near genes chr3R 17470496 intergenic not near genes chr3R 17470560 intergenic not near genes chr3R_10_17470001 chr3R_17470001 RAL-381 1663 chr3R 17591282 17591325 chr3R 17591718 17591745 F-element 8 430 4.0 3.5 3.8 1.7 463 chr3R 17591282 intergenic not near genes chr3R 17591514 intergenic not near genes chr3R 17591745 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-381 1664 chr3R 17658458 17658492 chr3R 17658644 17658677 10 184 3.0 0.0 1.5 4.0 219 chr3R 17658458 intron CG14322 + chr3R 17658568 intron CG14322 + chr3R 17658677 intron CG14322 + chr3R_10_17655001 chr3R_17655001 RAL-381 1665 chr3R 17681402 17681413 chr3R 17681506 17681517 6 104 5.5 3.5 4.5 1.1 115 chr3R 17681402 intron alt - chr3R 17681460 intron alt - chr3R 17681517 intron alt - chr3R_6_17680001 chr3R_17680001 RAL-381 1666 chr3R 17823213 17823233 chr3R 17823298 17823318 6 85 2.0 2.0 2.0 2.0 105 chr3R 17823213 intron tinc + chr3R 17823266 intron tinc + chr3R 17823318 intron tinc + chr3R_6_17820001 chr3R_17820001 RAL-381 1667 chr3R 17845204 17845217 chr3R 17845266 17845294 12 71 5.5 7.5 6.5 1.6 90 chr3R 17845204 intron tinc + chr3R 17845249 intron tinc + chr3R 17845294 intron tinc + chr3R_12_17845001 chr3R_17845001 RAL-381 1668 chr3R 17881888 17881903 chr3R 17881981 17881996 4 93 2.5 0.0 1.2 1.8 108 chr3R 17881888 exon Rim - chr3R 17881942 intron Rim - chr3R 17881996 intron Rim - chr3R_4_17880001 chr3R_17880001 RAL-381 1669 chr3R 17895344 17895350 chr3R 17895433 17895435 4 88 6.0 1.0 3.5 0.9 91 chr3R 17895344 intron Rim - chr3R 17895390 intron Rim - chr3R 17895435 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-381 1670 chr3R 17919582 17919607 chr3R 17919661 17919672 11 77 0.0 4.5 2.2 3.4 90 chr3R 17919582 intergenic cpo + chr3R 17919627 intergenic cpo + chr3R 17919672 intergenic cpo + chr3R_11_17915001 chr3R_17915001 RAL-381 1671 chr3R 17925861 17925885 chr3R 17927317 17927352 hobo 21 1462 4.0 7.5 5.8 3.1 1491 chr3R 17925861 intron cpo + chr3R 17926606 intron cpo + chr3R 17927352 intron cpo + chr3R_21_17925001 chr3R_17925001 RAL-381 1672 chr3R 17983212 17983246 chr3R 17983288 17983306 10 74 2.0 0.5 1.2 4.5 94 chr3R 17983212 intron cpo + chr3R 17983259 intron cpo + chr3R 17983306 intron cpo + chr3R_10_17980001 chr3R_17980001 RAL-381 1673 chr3R 18032786 18032802 chr3R 18040459 18040475 opus 6 7673 0.0 0.0 0.0 6.0 7689 chr3R 18032786 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040475 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-381 1674 chr3R 18041758 18041775 chr3R 18041835 18041852 5 76 0.0 1.5 0.8 2.8 94 chr3R 18041758 intergenic not near genes chr3R 18041805 intergenic not near genes chr3R 18041852 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-381 1675 chr3R 18061443 18061460 chr3R 18061535 18061552 4 92 1.0 0.0 0.5 2.7 109 chr3R 18061443 intergenic not near genes chr3R 18061498 intergenic not near genes chr3R 18061552 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-381 1676 chr3R 18122899 18122909 chr3R 18122976 18122986 4 77 1.5 4.0 2.8 1.1 87 chr3R 18122899 intron sr + chr3R 18122942 intron sr + chr3R 18122986 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-381 1677 chr3R 18501595 18501625 chr3R 18501676 18501706 6 80 3.0 3.0 3.0 1.5 111 chr3R 18501595 intron fru - chr3R 18501650 intron fru - chr3R 18501706 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-381 1678 chr3R 18538536 18538563 chr3R 18538623 18538650 4 87 1.5 4.5 3.0 1.0 114 chr3R 18538536 intron fru - chr3R 18538593 intron fru - chr3R 18538650 intron fru - chr3R_4_18535001 chr3R_18535001 RAL-381 1679 chr3R 18575397 18575408 chr3R 18575469 18575476 9 82 3.0 6.5 4.8 1.6 79 chr3R 18575397 intron,intron CG7694 +,fray + chr3R 18575436 intron,intron CG7694 +,fray + chr3R 18575476 intron,intron CG7694 +,fray + chr3R_9_18575001 chr3R_18575001 RAL-381 1680 chr3R 18618266 18618296 chr3R 18618351 18618381 6 85 1.5 2.0 1.8 2.1 115 chr3R 18618266 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618381 intron,intron qin +,CG14304 - chr3R_6_18615001 chr3R_18615001 RAL-381 1681 chr3R 18628782 18628794 chr3R 18628858 18628870 5 76 2.0 2.5 2.2 1.6 88 chr3R 18628782 intron qin + chr3R 18628826 intron qin + chr3R 18628870 intron qin + chr3R_5_18625001 chr3R_18625001 RAL-381 1682 chr3R 18664102 18664112 chr3R 18664179 18664189 6 77 0.0 4.0 2.0 2.0 87 chr3R 18664102 intron Gos28 + chr3R 18664146 intron Gos28 + chr3R 18664189 intron Gos28 + chr3R_6_18660001 chr3R_18660001 RAL-381 1683 chr3R 18681824 18681842 chr3R 18681918 18681936 4 94 0.5 0.5 0.5 2.7 112 chr3R 18681824 intron CG7708 + chr3R 18681880 intron CG7708 + chr3R 18681936 intron CG7708 + chr3R_4_18680001 chr3R_18680001 RAL-381 1684 chr3R 18695762 18695772 chr3R 18695846 18695856 6 84 5.5 0.0 2.8 1.6 94 chr3R 18695762 3` UTR CG34282 + chr3R 18695809 intergenic CG34282 + chr3R 18695856 intergenic CG34282 + chr3R_6_18695001 chr3R_18695001 RAL-381 1685 chr3R 18784909 18784944 chr3R 18785003 18785038 5 94 0.5 1.5 1.0 2.5 129 chr3R 18784909 intron CG7720 - chr3R 18784974 intron CG7720 - chr3R 18785038 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-381 1686 chr3R 18791502 18791506 chr3R 18791576 18791585 5 78 1.5 0.5 1.0 2.5 83 chr3R 18791502 intron CG7720 - chr3R 18791544 intron CG7720 - chr3R 18791585 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-381 1687 chr3R 18791509 18791518 chr3R 18791574 18791597 6 71 0.5 0.5 0.5 4.0 88 chr3R 18791509 intron CG7720 - chr3R 18791553 intron CG7720 - chr3R 18791597 intron CG7720 - chr3R_6_18790001 chr3R_18790001 RAL-381 1688 chr3R 18792803 18792808 chr3R 18792886 18792891 4 83 6.0 0.0 3.0 1.0 88 chr3R 18792803 intron CG7720 - chr3R 18792847 intron CG7720 - chr3R 18792891 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-381 1689 chr3R 18812082 18812103 chr3R 18812160 18812181 8 78 5.5 6.5 6.0 1.1 99 chr3R 18812082 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812181 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-381 1690 chr3R 18812104 18812109 chr3R 18812155 18812187 6 71 4.0 5.0 4.5 1.1 83 chr3R 18812104 intron CG18208 - chr3R 18812146 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-381 1691 chr3R 18817508 18817530 chr3R 18817606 18817628 4 98 2.0 0.5 1.2 1.8 120 chr3R 18817508 intron CG18208 - chr3R 18817568 intron CG18208 - chr3R 18817628 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-381 1692 chr3R 18837431 18837463 chr3R 18837513 18837545 13 81 4.5 1.5 3.0 3.2 114 chr3R 18837431 intron CG18208 - chr3R 18837488 intron CG18208 - chr3R 18837545 intron CG18208 - chr3R_13_18835001 chr3R_18835001 RAL-381 1693 chr3R 18839812 18839836 chr3R 18839896 18839918 10 82 5.0 4.5 4.8 1.7 106 chr3R 18839812 intron CG18208 - chr3R 18839865 intron CG18208 - chr3R 18839918 intron CG18208 - chr3R_10_18835001 chr3R_18835001 RAL-381 1694 chr3R 18860125 18860161 chr3R 18860211 18860239 7 81 3.0 2.5 2.8 1.8 114 chr3R 18860125 intergenic not near genes chr3R 18860182 intergenic not near genes chr3R 18860239 intergenic not near genes chr3R_7_18860001 chr3R_18860001 RAL-381 1695 chr3R 18965883 18965911 chr3R 18966379 18966379 9 491 5.5 5.0 5.2 1.5 496 chr3R 18965883 intron,intron CG42613 +,CG43732 + chr3R 18966131 intron,intron CG42613 +,CG43732 + chr3R 18966379 intron,intron CG42613 +,CG43732 + chr3R_9_18965001 chr3R_18965001 RAL-381 1696 chr3R 19101809 19101821 chr3R 19101920 19101932 4 111 3.5 2.0 2.8 1.1 123 chr3R 19101809 intron CG6040 + chr3R 19101870 intron CG6040 + chr3R 19101932 intron CG6040 + chr3R_4_19100001 chr3R_19100001 RAL-381 1697 chr3R 19117064 19117070 chr3R 19117208 19117214 6 144 17.5 0.0 8.8 0.6 150 chr3R 19117064 intron CG6040 + chr3R 19117139 intron CG6040 + chr3R 19117214 intron CG6040 + chr3R_6_19115001 chr3R_19115001 RAL-381 1698 chr3R 19193002 19193008 chr3R 19197281 19197312 F-element 5 4289 0.0 5.0 2.5 1.4 4310 chr3R 19193002 intron CG31475 + chr3R 19195157 intron CG31475 + chr3R 19197312 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-381 1699 chr3R 19207388 19207416 chr3R 19207474 19207496 13 84 0.5 0.5 0.5 8.7 108 chr3R 19207388 intergenic not near genes chr3R 19207442 intergenic not near genes chr3R 19207496 intergenic not near genes chr3R_13_19205001 chr3R_19205001 RAL-381 1700 chr3R 19264595 19264606 chr3R 19264677 19264689 4 83 11.0 3.5 7.2 0.5 94 chr3R 19264595 intergenic not near genes chr3R 19264642 intergenic not near genes chr3R 19264689 intergenic not near genes chr3R_4_19260001 chr3R_19260001 RAL-381 1701 chr3R 19278760 19278786 chr3R 19278836 19278861 8 76 3.0 6.5 4.8 1.4 101 chr3R 19278760 intergenic CR44173 - chr3R 19278810 3` UTR CR44173 - chr3R 19278861 3` UTR CR44173 - chr3R_8_19275001 chr3R_19275001 RAL-381 1702 chr3R 19340397 19340430 chr3R 19340474 19340506 5 77 2.0 3.5 2.8 1.3 109 chr3R 19340397 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340506 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-381 1703 chr3R 19490441 19490470 chr3R 19490529 19490559 16 89 4.0 6.5 5.2 2.6 118 chr3R 19490441 intron,intron Dys +,CG15025 - chr3R 19490500 intron,intron Dys +,CG15025 - chr3R 19490559 intron,intron Dys +,CG15025 - chr3R_16_19490001 chr3R_19490001 RAL-381 1704 chr3R 19505933 19505967 chr3R 19506032 19506066 17 97 4.5 2.5 3.5 3.8 133 chr3R 19505933 exon Dys + chr3R 19506000 intron Dys + chr3R 19506066 intron Dys + chr3R_17_19505001 chr3R_19505001 RAL-381 1705 chr3R 19693811 19693840 chr3R 19693899 19693927 11 87 5.0 6.5 5.8 1.6 116 chr3R 19693811 intron Naam + chr3R 19693869 intron Naam + chr3R 19693927 intron Naam + chr3R_11_19690001 chr3R_19690001 RAL-381 1706 chr3R 19716222 19716249 chr3R 19716299 19716326 7 77 0.5 0.5 0.5 4.7 104 chr3R 19716222 intergenic CG34286 - chr3R 19716274 intergenic CG34286 - chr3R 19716326 intergenic CG34286 - chr3R_7_19715001 chr3R_19715001 RAL-381 1707 chr3R 19879471 19879492 chr3R 19879555 19879576 4 84 2.0 2.0 2.0 1.3 105 chr3R 19879471 intergenic Arc42 +,Pk92B + chr3R 19879524 intergenic Pk92B +,Arc42 + chr3R 19879576 intergenic Pk92B +,Arc42 + chr3R_4_19875001 chr3R_19875001 RAL-381 1708 chr3R 19945984 19946002 chr3R 19946084 19946105 8 102 4.0 3.5 3.8 1.7 121 chr3R 19945984 intron Hs6st - chr3R 19946044 intron Hs6st - chr3R 19946105 intron Hs6st - chr3R_8_19945001 chr3R_19945001 RAL-381 1709 chr3R 19955348 19955375 chr3R 19955449 19955451 8 98 0.5 1.5 1.0 4.0 103 chr3R 19955348 intron Hs6st - chr3R 19955400 intron Hs6st - chr3R 19955451 intron Hs6st - chr3R_8_19955001 chr3R_19955001 RAL-381 1710 chr3R 19957269 19957298 chr3R 19957345 19957374 11 75 2.5 5.5 4.0 2.2 105 chr3R 19957269 intron Hs6st - chr3R 19957322 intron Hs6st - chr3R 19957374 intron Hs6st - chr3R_11_19955001 chr3R_19955001 RAL-381 1711 chr3R 20008842 20008852 chr3R 20008900 20008933 7 77 2.0 2.5 2.2 2.2 91 chr3R 20008842 intergenic MED25 +,Hs6st - chr3R 20008888 intergenic MED25 +,Hs6st - chr3R 20008933 intergenic MED25 +,Hs6st - chr3R_7_20005001 chr3R_20005001 RAL-381 1712 chr3R 20109536 20109570 chr3R 20114742 20114775 copia 12 5206 1.5 4.0 2.8 3.2 5239 chr3R 20109536 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114775 intergenic CG10887 + chr3R_12_20110001 chr3R_20110001 RAL-381 1713 chr3R 20156695 20156703 chr3R 20165865 20165870 roo 4 9169 7.5 5.0 6.2 0.6 9175 chr3R 20156695 intergenic not near genes chr3R 20161282 intergenic not near genes chr3R 20165870 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-381 1714 chr3R 20156706 20156720 chr3R 20165859 20165890 roo 5 9167 4.0 3.5 3.8 1.0 9184 chr3R 20156706 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165890 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-381 1715 chr3R 20177845 20177845 chr3R 21907534 21907536 4 1729690 5.5 32.0 18.8 0.2 1729691 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907536 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-381 1716 chr3R 20205562 20205589 chr3R 20205684 20205711 5 122 3.5 1.0 2.2 1.6 149 chr3R 20205562 intron Nlg4 + chr3R 20205636 intron Nlg4 + chr3R 20205711 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-381 1717 chr3R 20266522 20266544 chr3R 20272987 20273015 Burdock 9 6470 6.0 0.5 3.2 2.1 6493 chr3R 20266522 intron cic + chr3R 20269768 intron cic + chr3R 20273015 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-381 1718 chr3R 20282291 20282308 chr3R 20282367 20282384 5 76 0.0 1.5 0.8 2.8 93 chr3R 20282291 intron cic + chr3R 20282338 intron cic + chr3R 20282384 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-381 1719 chr3R 20489015 20489033 chr3R 20489091 20489109 6 76 2.5 0.5 1.5 2.4 94 chr3R 20489015 intergenic not near genes chr3R 20489062 intergenic not near genes chr3R 20489109 intergenic not near genes chr3R_6_20485001 chr3R_20485001 RAL-381 1720 chr3R 20512349 20512361 chr3R 20512432 20512444 4 83 6.0 4.5 5.2 0.6 95 chr3R 20512349 5` UTR CG4288 - chr3R 20512396 5` UTR CG4288 - chr3R 20512444 5` UTR CG4288 - chr3R_4_20510001 chr3R_20510001 RAL-381 1721 chr3R 20512363 20512369 chr3R 20512429 20512429 5 73 4.5 4.0 4.2 1.0 66 chr3R 20512363 5` UTR CG4288 - chr3R 20512396 5` UTR CG4288 - chr3R 20512429 5` UTR CG4288 - chr3R_5_20510001 chr3R_20510001 RAL-381 1722 chr3R 20703492 20703512 chr3R 20703886 20703906 7 393 0.5 3.0 1.8 2.5 414 chr3R 20703492 intron Oamb - chr3R 20703699 intron Oamb - chr3R 20703906 intron Oamb - chr3R_7_20700001 chr3R_20700001 RAL-381 1723 chr3R 20722857 20722886 chr3R 20722982 20723013 6 126 3.0 4.0 3.5 1.3 156 chr3R 20722857 intergenic not near genes chr3R 20722935 intergenic not near genes chr3R 20723013 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-381 1724 chr3R 20771703 20771728 chr3R 20771784 20771809 4 79 0.0 4.5 2.2 1.2 106 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771809 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-381 1725 chr3R 20854501 20854509 chr3R 20859271 20859298 Doc 5 4786 13.5 4.0 8.8 0.5 4797 chr3R 20854501 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859298 exon Ir93a - chr3R_5_20855001 chr3R_20855001 RAL-381 1726 chr3R 20870251 20870284 chr3R 20870335 20870364 20 84 3.5 5.0 4.2 3.8 113 chr3R 20870251 intergenic not near genes chr3R 20870308 intergenic not near genes chr3R 20870364 intergenic not near genes chr3R_20_20870001 chr3R_20870001 RAL-381 1727 chr3R 20958387 20958423 chr3R 20958488 20958523 14 100 4.5 5.0 4.8 2.4 136 chr3R 20958387 intron Atpalpha + chr3R 20958455 intron Atpalpha + chr3R 20958523 intron Atpalpha + chr3R_14_20955001 chr3R_20955001 RAL-381 1728 chr3R 20966136 20966157 chr3R 20966219 20966240 8 83 0.0 4.5 2.2 2.5 104 chr3R 20966136 intron Atpalpha + chr3R 20966188 intron Atpalpha + chr3R 20966240 intron Atpalpha + chr3R_8_20965001 chr3R_20965001 RAL-381 1729 chr3R 21014012 21014045 chr3R 21014089 21014122 10 77 2.0 3.0 2.5 2.9 110 chr3R 21014012 3` UTR Calx + chr3R 21014067 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-381 1730 chr3R 21048377 21048408 chr3R 21051418 21051449 13 3043 36.5 13.0 24.8 0.5 3072 chr3R 21048377 exon CG7079 - chr3R 21049913 intergenic CG17279 - chr3R 21051449 3` UTR Mvl - chr3R_13_21045001 chr3R_21045001 RAL-381 1731 chr3R 21108038 21108060 chr3R 21108299 21108321 4 258 2.0 1.5 1.8 1.4 283 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108180 intergenic Sec15 -,rtet + chr3R 21108321 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-381 1732 chr3R 21141672 21141707 chr3R 21150153 21150177 Tirant 10 8478 8.5 5.0 6.8 1.3 8505 chr3R 21141672 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150177 intron SNF4Agamma + chr3R_10_21145001 chr3R_21145001 RAL-381 1733 chr3R 21154548 21154585 chr3R 21154753 21154800 10 211 4.5 0.5 2.5 2.9 252 chr3R 21154548 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_10_21150001 chr3R_21150001 RAL-381 1734 chr3R 21240445 21240477 chr3R 21240537 21240569 10 91 1.5 3.0 2.2 3.1 124 chr3R 21240445 intergenic not near genes chr3R 21240507 intergenic not near genes chr3R 21240569 intergenic not near genes chr3R_10_21240001 chr3R_21240001 RAL-381 1735 chr3R 21343826 21343844 chr3R 21343919 21343935 7 93 4.5 1.0 2.8 1.8 109 chr3R 21343826 intron CG16791 - chr3R 21343880 intron CG16791 - chr3R 21343935 intron CG16791 - chr3R_7_21340001 chr3R_21340001 RAL-381 1736 chr3R 21385936 21385947 chr3R 21386013 21386024 8 77 3.0 5.0 4.0 1.6 88 chr3R 21385936 intergenic not near genes chr3R 21385980 intergenic not near genes chr3R 21386024 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-381 1737 chr3R 21388911 21388940 chr3R 21389004 21389038 11 93 3.0 3.5 3.2 2.6 127 chr3R 21388911 5` UTR bap + chr3R 21388974 5` UTR bap + chr3R 21389038 exon bap + chr3R_11_21385001 chr3R_21385001 RAL-381 1738 chr3R 21472019 21472035 chr3R 21472094 21472116 4 79 0.0 4.0 2.0 1.3 97 chr3R 21472019 intergenic not near genes chr3R 21472068 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-381 1739 chr3R 21518252 21518269 chr3R 21518336 21518353 6 84 0.0 3.5 1.8 2.1 101 chr3R 21518252 intergenic not near genes chr3R 21518302 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_6_21515001 chr3R_21515001 RAL-381 1740 chr3R 21519994 21520137 chr3R 21520095 21520231 5 97 1.0 1.0 1.0 2.5 237 chr3R 21519994 intergenic not near genes chr3R 21520112 intergenic not near genes chr3R 21520231 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-381 1741 chr3R 21624104 21624119 chr3R 21624198 21624213 5 94 4.0 3.0 3.5 1.1 109 chr3R 21624104 intron E2f - chr3R 21624158 intron E2f - chr3R 21624213 intron E2f - chr3R_5_21620001 chr3R_21620001 RAL-381 1742 chr3R 21761123 21761152 chr3R 21768511 21768515 mdg1 14 7387 5.0 5.5 5.2 2.3 7392 chr3R 21761123 exon CG42335 + chr3R 21764819 intron CG42335 + chr3R 21768515 intron CG42335 + chr3R_14_21760001 chr3R_21760001 RAL-381 1743 chr3R 21820462 21820496 chr3R 21820568 21820604 7 107 2.0 4.0 3.0 1.8 142 chr3R 21820462 intron CASK - chr3R 21820533 intron CASK - chr3R 21820604 intron CASK - chr3R_7_21820001 chr3R_21820001 RAL-381 1744 chr3R 21845892 21845902 chr3R 21846063 21846073 6 171 7.0 3.0 5.0 1.0 181 chr3R 21845892 5` UTR,exon CR44087 +,Gr93d - chr3R 21845982 intron,exon CR44087 +,Gr93d - chr3R 21846073 intron,exon CR44087 +,Gr93d - chr3R_6_21845001 chr3R_21845001 RAL-381 1745 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 22.5 32.0 27.2 0.1 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-381 1746 chr3R 9620956 9620956 chr3R 21907534 21907534 5 12286578 21.5 32.0 26.8 0.2 12286578 chr3R 9620956 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-381 1747 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 13.5 32.0 22.8 0.2 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-381 1748 chr3R 21337429 21337429 chr3R 21907534 21907534 5 570105 15.0 32.0 23.5 0.2 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_5_21620001 chr3R_21620001 RAL-381 1749 chr3R 21907534 21907534 chr3R 28831801 28831802 23 6924268 32.0 19.5 25.8 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-381 1750 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 23.0 32.0 27.5 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-381 1751 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 5.5 32.0 18.8 0.2 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-381 1752 chr3R 21907535 21907535 chr3R 28831801 28831803 39 6924266 32.0 19.5 25.8 1.5 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-381 1753 chr3R 21907535 21907535 chr3R 29013339 29013340 4 7105805 32.0 14.5 23.2 0.2 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-381 1754 chr3R 9620956 9620956 chr3R 21907536 21907536 4 12286580 21.5 33.0 27.2 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-381 1755 chr3R 17389054 17389054 chr3R 21907536 21907536 5 4518482 13.5 33.0 23.2 0.2 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-381 1756 chr3R 21907536 21907536 chr3R 28831801 28831802 43 6924266 32.0 19.5 25.8 1.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-381 1757 chr3R 21907536 21907536 chr3R 29013339 29013340 4 7105804 32.0 14.5 23.2 0.2 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-381 1758 chr3R 21985229 21985259 chr3R 21985334 21985364 8 105 1.0 0.0 0.5 5.3 135 chr3R 21985229 intron Eip93F + chr3R 21985296 intron Eip93F + chr3R 21985364 intron Eip93F + chr3R_8_21985001 chr3R_21985001 RAL-381 1759 chr3R 22115359 22115384 chr3R 22115757 22115782 5 398 1.5 3.0 2.2 1.6 423 chr3R 22115359 intergenic Ir94b -,Ir94a + chr3R 22115570 exon Ir94b - chr3R 22115782 exon Ir94b - chr3R_5_22115001 chr3R_22115001 RAL-381 1760 chr3R 22117415 22117448 chr3R 22117491 22117524 4 76 0.0 0.5 0.2 3.3 109 chr3R 22117415 intergenic Ir94b -,Ir94c - chr3R 22117470 intergenic Ir94c -,Ir94b - chr3R 22117524 intergenic Ir94c -,Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-381 1761 chr3R 22234687 22234707 chr3R 22236006 22236026 pogo 6 1318 4.0 2.5 3.2 1.4 1339 chr3R 22234687 intron SKIP + chr3R 22235356 intron SKIP + chr3R 22236026 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-381 1762 chr3R 22239501 22239523 chr3R 22248557 22248582 roo 7 9059 1.5 5.5 3.5 1.6 9081 chr3R 22239501 intron SKIP + chr3R 22244042 intron SKIP + chr3R 22248582 intron SKIP + chr3R_7_22240001 chr3R_22240001 RAL-381 1763 chr3R 22272348 22272372 chr3R 22272430 22272454 8 82 3.5 1.5 2.5 2.3 106 chr3R 22272348 intron SKIP + chr3R 22272401 intron SKIP + chr3R 22272454 intron SKIP + chr3R_8_22270001 chr3R_22270001 RAL-381 1764 chr3R 22369301 22369332 chr3R 22369380 22369408 11 73 4.5 5.0 4.8 1.9 107 chr3R 22369301 intron PyK + chr3R 22369354 intron PyK + chr3R 22369408 intron PyK + chr3R_11_22365001 chr3R_22365001 RAL-381 1765 chr3R 22450542 22450579 chr3R 22453182 22453189 NOF 15 2638 2.5 4.5 3.5 3.3 2647 chr3R 22450542 intron CG34376 + chr3R 22451866 intron CG34376 + chr3R 22453189 intron CG34376 + chr3R_15_22450001 chr3R_22450001 RAL-381 1766 chr3R 22499829 22499842 chr3R 22499896 22499915 9 73 0.5 5.5 3.0 2.2 86 chr3R 22499829 intron Octbeta1R + chr3R 22499872 intron Octbeta1R + chr3R 22499915 intron Octbeta1R + chr3R_9_22495001 chr3R_22495001 RAL-381 1767 chr3R 22507798 22507816 chr3R 22507872 22507892 7 81 2.5 4.5 3.5 1.6 94 chr3R 22507798 intron Octbeta1R + chr3R 22507845 intron Octbeta1R + chr3R 22507892 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-381 1768 chr3R 22520774 22520790 chr3R 22520861 22520877 5 87 3.0 6.5 4.8 0.9 103 chr3R 22520774 intron CG5346 - chr3R 22520826 intron CG5346 - chr3R 22520877 intron CG5346 - chr3R_5_22520001 chr3R_22520001 RAL-381 1769 chr3R 22526301 22526327 chr3R 22526382 22526408 5 81 2.5 1.5 2.0 1.7 107 chr3R 22526301 intron CG5346 - chr3R 22526354 intron CG5346 - chr3R 22526408 intron CG5346 - chr3R_5_22525001 chr3R_22525001 RAL-381 1770 chr3R 22589789 22589818 chr3R 22590708 22590735 4 917 0.5 0.5 0.5 2.7 946 chr3R 22589789 intron Efa6 + chr3R 22590262 intron Efa6 + chr3R 22590735 intron Efa6 + chr3R_4_22590001 chr3R_22590001 RAL-381 1771 chr3R 22591674 22591697 chr3R 22591752 22591761 8 78 1.0 2.0 1.5 3.2 87 chr3R 22591674 intron Efa6 + chr3R 22591718 intron Efa6 + chr3R 22591761 intron Efa6 + chr3R_8_22590001 chr3R_22590001 RAL-381 1772 chr3R 22640370 22640403 chr3R 22640452 22640464 12 80 1.5 0.0 0.8 6.7 94 chr3R 22640370 intron wake + chr3R 22640417 intron wake + chr3R 22640464 intron wake + chr3R_12_22640001 chr3R_22640001 RAL-381 1773 chr3R 22769091 22769125 chr3R 22769168 22769202 11 75 6.0 4.5 5.2 1.8 111 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_11_22765001 chr3R_22765001 RAL-381 1774 chr3R 22797758 22797936 chr3R 22797844 22798032 19 89 0.0 0.0 0.0 19.0 274 chr3R 22797758 intergenic not near genes chr3R 22797895 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_19_22795001 chr3R_22795001 RAL-381 1775 chr3R 22835815 22835852 chr3R 22835896 22835934 14 81 4.5 4.5 4.5 2.5 119 chr3R 22835815 intergenic not near genes chr3R 22835874 intergenic not near genes chr3R 22835934 intergenic not near genes chr3R_14_22835001 chr3R_22835001 RAL-381 1776 chr3R 22840813 22840852 chr3R 22841275 22841295 14 458 1.5 3.5 2.5 4.0 482 chr3R 22840813 intergenic not near genes chr3R 22841054 intergenic not near genes chr3R 22841295 intergenic not near genes chr3R_14_22840001 chr3R_22840001 RAL-381 1777 chr3R 22842395 22842419 chr3R 22842494 22842518 10 99 3.5 7.0 5.2 1.6 123 chr3R 22842395 intergenic not near genes chr3R 22842456 intergenic not near genes chr3R 22842518 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-381 1778 chr3R 22853291 22853298 chr3R 22853368 22853375 9 77 7.5 6.5 7.0 1.1 84 chr3R 22853291 intergenic not near genes chr3R 22853333 intergenic not near genes chr3R 22853375 intergenic not near genes chr3R_9_22850001 chr3R_22850001 RAL-381 1779 chr3R 22880602 22880609 chr3R 22880679 22880684 4 76 11.5 12.0 11.8 0.3 82 chr3R 22880602 intergenic not near genes chr3R 22880643 intergenic not near genes chr3R 22880684 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-381 1780 chr3R 22881192 22881218 chr3R 22884898 22884924 Doc 5 3706 0.5 0.5 0.5 3.3 3732 chr3R 22881192 intergenic not near genes chr3R 22883058 intergenic not near genes chr3R 22884924 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-381 1781 chr3R 22906637 22906660 chr3R 22906715 22906717 4 73 5.5 2.5 4.0 0.8 80 chr3R 22906637 intron klg + chr3R 22906677 intron klg + chr3R 22906717 intron klg + chr3R_4_22905001 chr3R_22905001 RAL-381 1782 chr3R 22971243 22971273 chr3R 22971337 22971358 13 93 5.5 4.5 5.0 2.2 115 chr3R 22971243 intergenic not near genes chr3R 22971300 intergenic not near genes chr3R 22971358 intergenic not near genes chr3R_13_22970001 chr3R_22970001 RAL-381 1783 chr3R 22974292 22974303 chr3R 22974376 22974387 4 84 0.0 5.0 2.5 1.1 95 chr3R 22974292 intergenic not near genes chr3R 22974340 intergenic not near genes chr3R 22974387 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-381 1784 chr3R 23064177 23064202 chr3R 23064284 23064302 13 107 5.0 3.5 4.2 2.5 125 chr3R 23064177 exon CG17111 - chr3R 23064240 intron CG17111 - chr3R 23064302 exon CG17111 - chr3R_13_23060001 chr3R_23060001 RAL-381 1785 chr3R 23064873 23064902 chr3R 23064964 23064993 7 91 0.0 3.5 1.8 2.5 120 chr3R 23064873 intron CG17111 - chr3R 23064933 intron CG17111 - chr3R 23064993 intron CG17111 - chr3R_7_23060001 chr3R_23060001 RAL-381 1786 chr3R 23073659 23073687 chr3R 23073741 23073776 10 85 3.5 2.0 2.8 2.6 117 chr3R 23073659 intron CG13830 - chr3R 23073718 intron CG13830 - chr3R 23073776 intron CG13830 - chr3R_10_23070001 chr3R_23070001 RAL-381 1787 chr3R 23079062 23079085 chr3R 23079182 23079205 11 120 4.5 6.5 5.5 1.7 143 chr3R 23079062 intron CG13830 - chr3R 23079134 intron CG13830 - chr3R 23079205 intron CG13830 - chr3R_11_23075001 chr3R_23075001 RAL-381 1788 chr3R 23086129 23086140 chr3R 23086237 23086271 5 126 3.0 2.0 2.5 1.4 142 chr3R 23086129 intron CG13830 - chr3R 23086200 intron CG13830 - chr3R 23086271 intron CG13830 - chr3R_5_23085001 chr3R_23085001 RAL-381 1789 chr3R 23100154 23100437 chr3R 23100241 23100510 24 84 6.5 3.0 4.8 4.1 356 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100332 intron,exon CG13830 -,CG6738 + chr3R 23100510 intron,exon CG13830 -,CG6738 + chr3R_24_23100001 chr3R_23100001 RAL-381 1790 chr3R 23108743 23108759 chr3R 23109244 23109260 11 499 6.5 2.0 4.2 2.1 517 chr3R 23108743 intron CG13830 - chr3R 23109002 intron CG13830 - chr3R 23109260 intron CG13830 - chr3R_11_23105001 chr3R_23105001 RAL-381 1791 chr3R 23113800 23113818 chr3R 23113876 23113890 7 76 0.5 3.5 2.0 2.3 90 chr3R 23113800 intergenic Rassf - chr3R 23113845 intergenic Rassf - chr3R 23113890 intergenic Rassf - chr3R_7_23110001 chr3R_23110001 RAL-381 1792 chr3R 23241275 23241302 chr3R 23241358 23241385 7 78 3.5 5.5 4.5 1.3 110 chr3R 23241275 intron CG4467 - chr3R 23241330 intron CG4467 - chr3R 23241385 intron CG4467 - chr3R_7_23240001 chr3R_23240001 RAL-381 1793 chr3R 23242297 23242304 chr3R 23242377 23242382 4 79 7.5 2.5 5.0 0.7 85 chr3R 23242297 intron CG4467 - chr3R 23242340 intron CG4467 - chr3R 23242382 intron CG4467 - chr3R_4_23240001 chr3R_23240001 RAL-381 1794 chr3R 23335440 23335454 chr3R 23335515 23335532 8 77 1.0 2.5 1.8 2.9 92 chr3R 23335440 intron pnt - chr3R 23335486 intron pnt - chr3R 23335532 intron pnt - chr3R_8_23335001 chr3R_23335001 RAL-381 1795 chr3R 23338898 23338916 chr3R 23338971 23338989 6 70 5.5 3.0 4.2 1.2 91 chr3R 23338898 intron pnt - chr3R 23338944 intron pnt - chr3R 23338989 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-381 1796 chr3R 23543304 23543331 chr3R 23543381 23543408 8 77 3.0 1.0 2.0 2.7 104 chr3R 23543304 intergenic not near genes chr3R 23543356 intergenic not near genes chr3R 23543408 intergenic not near genes chr3R_8_23540001 chr3R_23540001 RAL-381 1797 chr3R 23548068 23548100 chr3R 23548373 23548400 14 302 3.0 3.5 3.2 3.3 332 chr3R 23548068 intergenic not near genes chr3R 23548234 intergenic not near genes chr3R 23548400 intergenic not near genes chr3R_14_23545001 chr3R_23545001 RAL-381 1798 chr3R 23575692 23575718 chr3R 23575771 23575806 9 87 1.5 3.5 2.5 2.6 114 chr3R 23575692 intron beat-IV + chr3R 23575749 intron beat-IV + chr3R 23575806 intron beat-IV + chr3R_9_23575001 chr3R_23575001 RAL-381 1799 chr3R 23684717 23684730 chr3R 23685187 23685198 roo 4 473 2.0 7.5 4.8 0.7 481 chr3R 23684717 intron CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685198 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-381 1800 chr3R 23733812 23733821 chr3R 23734025 23734033 6 212 9.5 4.0 6.8 0.8 221 chr3R 23733812 5` UTR Hmgcr + chr3R 23733922 intron Hmgcr + chr3R 23734033 intron Hmgcr + chr3R_6_23730001 chr3R_23730001 RAL-381 1801 chr3R 23733822 23733842 chr3R 23734024 23734055 10 208 5.5 3.0 4.2 1.9 233 chr3R 23733822 5` UTR Hmgcr + chr3R 23733938 intron Hmgcr + chr3R 23734055 intron Hmgcr + chr3R_10_23730001 chr3R_23730001 RAL-381 1802 chr3R 23738483 23738497 chr3R 23738571 23738583 4 88 6.0 4.0 5.0 0.7 100 chr3R 23738483 intron Hmgcr + chr3R 23738533 intron Hmgcr + chr3R 23738583 intron Hmgcr + chr3R_4_23735001 chr3R_23735001 RAL-381 1803 chr3R 23804340 23804369 chr3R 23804474 23804501 12 134 5.5 1.0 3.2 2.9 161 chr3R 23804340 intron,intron CG33111 -,CG34355 + chr3R 23804420 intron,intron CG33111 -,CG34355 + chr3R 23804501 intron,intron CG33111 -,CG34355 + chr3R_12_23800001 chr3R_23800001 RAL-381 1804 chr3R 23820636 23820665 chr3R 23820720 23820749 9 81 3.0 3.0 3.0 2.2 113 chr3R 23820636 5` UTR CG34355 + chr3R 23820692 5` UTR CG34355 + chr3R 23820749 5` UTR CG34355 + chr3R_9_23820001 chr3R_23820001 RAL-381 1805 chr3R 23888094 23888114 chr3R 23888180 23888200 4 86 0.0 4.0 2.0 1.3 106 chr3R 23888094 intron Pli - chr3R 23888147 intron Pli - chr3R 23888200 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-381 1806 chr3R 23893787 23893809 chr3R 23893885 23893907 11 96 0.0 8.5 4.2 2.1 120 chr3R 23893787 intergenic sba -,tbrd-1 - chr3R 23893847 intergenic sba -,tbrd-1 - chr3R 23893907 intergenic sba - chr3R_11_23890001 chr3R_23890001 RAL-381 1807 chr3R 23944912 23944935 chr3R 23944997 23945020 12 84 2.5 6.5 4.5 2.2 108 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_12_23940001 chr3R_23940001 RAL-381 1808 chr3R 23949055 23949066 chr3R 23949132 23949143 4 77 1.5 2.0 1.8 1.4 88 chr3R 23949055 intergenic not near genes chr3R 23949099 intergenic not near genes chr3R 23949143 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-381 1809 chr3R 24025577 24025602 chr3R 24025655 24025677 6 77 4.0 4.5 4.2 1.2 100 chr3R 24025577 intron KrT95D - chr3R 24025627 intron KrT95D - chr3R 24025677 intron KrT95D - chr3R_6_24025001 chr3R_24025001 RAL-381 1810 chr3R 24072084 24072115 chr3R 24072522 24072541 jockey 13 437 6.0 7.0 6.5 1.7 457 chr3R 24072084 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072541 intron 4EHP - chr3R_13_24070001 chr3R_24070001 RAL-381 1811 chr3R 24076916 24076947 chr3R 24078383 24078414 hobo 9 1467 5.0 5.5 5.2 1.5 1498 chr3R 24076916 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-381 1812 chr3R 24116524 24116561 chr3R 24116818 24116855 12 294 1.5 4.5 3.0 3.0 331 chr3R 24116524 intron Rootletin + chr3R 24116690 intron Rootletin + chr3R 24116855 intron Rootletin + chr3R_12_24115001 chr3R_24115001 RAL-381 1813 chr3R 24143995 24144025 chr3R 24144075 24144106 5 79 2.5 2.5 2.5 1.4 111 chr3R 24143995 intron Kal1 + chr3R 24144050 intron Kal1 + chr3R 24144106 intron Kal1 + chr3R_5_24140001 chr3R_24140001 RAL-381 1814 chr3R 24199744 24199772 chr3R 24199824 24199851 9 79 0.0 3.0 1.5 3.6 107 chr3R 24199744 intron twin - chr3R 24199798 intron twin - chr3R 24199851 intron twin - chr3R_9_24195001 chr3R_24195001 RAL-381 1815 chr3R 24207217 24207242 chr3R 24212293 24212318 flea 8 5075 7.5 3.0 5.2 1.3 5101 chr3R 24207217 intron twin - chr3R 24209768 intron twin - chr3R 24212318 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-381 1816 chr3R 24291123 24291143 chr3R 24291199 24291223 11 86 6.5 3.0 4.8 1.9 100 chr3R 24291123 exon CG6364 + chr3R 24291173 intron CG6364 + chr3R 24291223 intron CG6364 + chr3R_11_24290001 chr3R_24290001 RAL-381 1817 chr3R 21907534 21907535 chr3R 24389465 24389465 8 2481930 32.0 13.0 22.5 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_8_23145001 chr3R_23145001 RAL-381 1818 chr3R 24431601 24431626 chr3R 24431680 24431705 4 79 1.5 0.5 1.0 2.0 104 chr3R 24431601 intron nAChRalpha1 - chr3R 24431653 intron nAChRalpha1 - chr3R 24431705 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-381 1819 chr3R 24433478 24433503 chr3R 24433557 24433582 8 79 4.0 4.0 4.0 1.6 104 chr3R 24433478 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433582 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-381 1820 chr3R 24447722 24447753 chr3R 24447809 24447840 4 87 0.0 0.0 0.0 4.0 118 chr3R 24447722 intron nAChRalpha1 - chr3R 24447781 intron nAChRalpha1 - chr3R 24447840 intron nAChRalpha1 - chr3R_4_24445001 chr3R_24445001 RAL-381 1821 chr3R 24454527 24454550 chr3R 24454616 24454640 4 84 2.0 3.0 2.5 1.1 113 chr3R 24454527 intron nAChRalpha1 - chr3R 24454584 intron nAChRalpha1 - chr3R 24454640 intron nAChRalpha1 - chr3R_4_24450001 chr3R_24450001 RAL-381 1822 chr3R 24475381 24475415 chr3R 24475460 24475472 14 73 3.0 2.5 2.8 3.7 91 chr3R 24475381 intergenic not near genes chr3R 24475426 intergenic not near genes chr3R 24475472 intergenic not near genes chr3R_14_24475001 chr3R_24475001 RAL-381 1823 chr3R 24493061 24493085 chr3R 24493147 24493167 9 85 2.0 3.0 2.5 2.6 106 chr3R 24493061 intergenic not near genes chr3R 24493114 intergenic not near genes chr3R 24493167 intergenic not near genes chr3R_9_24490001 chr3R_24490001 RAL-381 1824 chr3R 24493275 24493302 chr3R 24493504 24493527 BS 5 228 1.0 2.5 1.8 1.8 252 chr3R 24493275 intergenic not near genes chr3R 24493401 intergenic not near genes chr3R 24493527 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-381 1825 chr3R 24527819 24527834 chr3R 24527910 24527925 5 91 0.5 3.0 1.8 1.8 106 chr3R 24527819 intergenic CG6607 +,CG13618 + chr3R 24527872 intergenic CG6607 +,CG13618 + chr3R 24527925 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-381 1826 chr3R 24624378 24624393 chr3R 24624467 24624482 4 89 2.0 4.5 3.2 1.0 104 chr3R 24624378 intron Syx18 - chr3R 24624430 intron Syx18 - chr3R 24624482 exon Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-381 1827 chr3R 24668430 24668462 chr3R 24668542 24668574 16 112 2.5 6.5 4.5 2.9 144 chr3R 24668430 intron slo + chr3R 24668502 intron slo + chr3R 24668574 intron slo + chr3R_16_24665001 chr3R_24665001 RAL-381 1828 chr3R 24730098 24730115 chr3R 24732476 24732493 Doc 9 2378 6.0 1.5 3.8 1.9 2395 chr3R 24730098 intron tok + chr3R 24731296 intron tok + chr3R 24732493 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-381 1829 chr3R 24785081 24785113 chr3R 24785157 24785160 8 72 2.0 6.5 4.2 1.5 79 chr3R 24785081 3` UTR CG5805 - chr3R 24785120 3` UTR CG5805 - chr3R 24785160 3` UTR CG5805 - chr3R_8_24785001 chr3R_24785001 RAL-381 1830 chr3R 24789984 24790007 chr3R 24790129 24790152 7 145 1.5 4.5 3.0 1.8 168 chr3R 24789984 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790152 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-381 1831 chr3R 24912479 24912513 chr3R 24912561 24912595 8 82 1.5 2.5 2.0 2.7 116 chr3R 24912479 intergenic not near genes chr3R 24912537 intergenic CR44267 + chr3R 24912595 intergenic CR44267 + chr3R_8_24910001 chr3R_24910001 RAL-381 1832 chr3R 24927132 24927138 chr3R 24931923 24931929 Doc 4 4791 4.0 4.0 4.0 0.8 4797 chr3R 24927132 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931929 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-381 1833 chr3R 24927142 24927155 chr3R 24931922 24931946 Doc 4 4787 3.0 3.5 3.2 1.0 4804 chr3R 24927142 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-381 1834 chr3R 24974915 24974933 chr3R 24974994 24975012 5 79 5.5 4.5 5.0 0.8 97 chr3R 24974915 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975012 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-381 1835 chr3R 25004899 25004920 chr3R 25004982 25005003 12 83 6.0 7.0 6.5 1.6 104 chr3R 25004899 intron tnc + chr3R 25004951 intron tnc + chr3R 25005003 intron tnc + chr3R_12_25000001 chr3R_25000001 RAL-381 1836 chr3R 25027545 25027570 chr3R 25027758 25027783 9 212 3.5 7.0 5.2 1.5 238 chr3R 25027545 intron Hr96 + chr3R 25027664 intron Hr96 + chr3R 25027783 intron Hr96 + chr3R_9_25025001 chr3R_25025001 RAL-381 1837 chr3R 25046819 25046837 chr3R 25046896 25046914 7 75 3.0 6.5 4.8 1.2 95 chr3R 25046819 exon CG11786 + chr3R 25046866 exon CG11786 + chr3R 25046914 exon CG11786 + chr3R_7_25045001 chr3R_25045001 RAL-381 1838 chr3R 25209595 25209630 chr3R 25209677 25209698 8 80 2.5 3.5 3.0 2.0 103 chr3R 25209595 intron CG13654 + chr3R 25209646 intron CG13654 + chr3R 25209698 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-381 1839 chr3R 25232524 25232545 chr3R 25232787 25232801 6 260 2.5 3.5 3.0 1.5 277 chr3R 25232524 intergenic Cad96Cb - chr3R 25232662 intergenic Cad96Cb - chr3R 25232801 intergenic Cad96Cb - chr3R_6_25230001 chr3R_25230001 RAL-381 1840 chr3R 25235700 25235725 chr3R 25235790 25235815 4 90 0.5 1.0 0.8 2.2 115 chr3R 25235700 intergenic CG10420 - chr3R 25235758 intergenic CG10420 - chr3R 25235815 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-381 1841 chr3R 25368476 25368499 chr3R 25368594 25368617 4 118 2.5 0.0 1.2 1.8 141 chr3R 25368476 intron Fur1 - chr3R 25368546 intron Fur1 - chr3R 25368617 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-381 1842 chr3R 25376361 25376384 chr3R 25376483 25376507 5 123 4.5 10.0 7.2 0.6 146 chr3R 25376361 intron Fur1 - chr3R 25376434 intron Fur1 - chr3R 25376507 intron Fur1 - chr3R_5_25375001 chr3R_25375001 RAL-381 1843 chr3R 25411048 25411087 chr3R 25411126 25411165 5 78 1.0 3.5 2.2 1.6 117 chr3R 25411048 intron Fur1 - chr3R 25411106 intron Fur1 - chr3R 25411165 intron Fur1 - chr3R_5_25410001 chr3R_25410001 RAL-381 1844 chr3R 25422069 25422096 chr3R 25422150 25422177 8 78 1.5 0.0 0.8 4.4 108 chr3R 25422069 intron Fur1 - chr3R 25422123 intron Fur1 - chr3R 25422177 intron Fur1 - chr3R_8_25420001 chr3R_25420001 RAL-381 1845 chr3R 25454680 25454687 chr3R 25455289 25455292 4 608 0.0 6.0 3.0 1.0 612 chr3R 25454680 intron Fur1 - chr3R 25454986 intron Fur1 - chr3R 25455292 intron Fur1 - chr3R_4_25450001 chr3R_25450001 RAL-381 1846 chr3R 25512398 25512425 chr3R 25512474 25512504 14 78 3.0 5.5 4.2 2.7 106 chr3R 25512398 intergenic not near genes chr3R 25512451 intergenic not near genes chr3R 25512504 intergenic not near genes chr3R_14_25510001 chr3R_25510001 RAL-381 1847 chr3R 25576839 25576870 chr3R 25576938 25576969 11 96 2.0 5.0 3.5 2.4 130 chr3R 25576839 intron msi + chr3R 25576904 intron msi + chr3R 25576969 intron msi + chr3R_11_25575001 chr3R_25575001 RAL-381 1848 chr3R 25689128 25689163 chr3R 25689236 25689271 17 105 5.5 6.0 5.8 2.5 143 chr3R 25689128 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_17_25685001 chr3R_25685001 RAL-381 1849 chr3R 25696333 25696337 chr3R 25696405 25696417 6 77 7.0 2.0 4.5 1.1 84 chr3R 25696333 intergenic not near genes chr3R 25696375 intergenic not near genes chr3R 25696417 intergenic not near genes chr3R_6_25695001 chr3R_25695001 RAL-381 1850 chr3R 25696338 25696345 chr3R 25696403 25696430 6 72 4.5 2.0 3.2 1.4 92 chr3R 25696338 intergenic not near genes chr3R 25696384 intergenic not near genes chr3R 25696430 intergenic not near genes chr3R_6_25695001 chr3R_25695001 RAL-381 1851 chr3R 25782901 25782933 chr3R 25782977 25783010 17 77 8.0 5.0 6.5 2.3 109 chr3R 25782901 intergenic not near genes chr3R 25782956 intergenic not near genes chr3R 25783010 intergenic not near genes chr3R_17_25780001 chr3R_25780001 RAL-381 1852 chr3R 25797917 25797948 chr3R 25799673 25799704 10 1756 17.5 29.5 23.5 0.4 1787 chr3R 25797917 intergenic CR43847 - chr3R 25798810 intergenic not near genes chr3R 25799704 intergenic not near genes chr3R_10_25795001 chr3R_25795001 RAL-381 1853 chr3R 25797122 25797157 chr3R 25799838 25799873 10 2717 25.5 37.0 31.2 0.3 2751 chr3R 25797122 intron CR43847 - chr3R 25798498 intergenic not near genes chr3R 25799873 intergenic not near genes chr3R_10_25795001 chr3R_25795001 RAL-381 1854 chr3R 25814043 25814053 chr3R 25814124 25814133 6 81 6.5 3.5 5.0 1.0 90 chr3R 25814043 intergenic not near genes chr3R 25814088 intergenic not near genes chr3R 25814133 intergenic not near genes chr3R_6_25810001 chr3R_25810001 RAL-381 1855 chr3R 25814057 25814069 chr3R 25814119 25814151 7 69 3.5 3.0 3.2 1.7 94 chr3R 25814057 intergenic not near genes chr3R 25814104 intergenic not near genes chr3R 25814151 intergenic not near genes chr3R_7_25810001 chr3R_25810001 RAL-381 1856 chr3R 25832692 25832724 chr3R 25841870 25841906 roo 13 9180 3.5 2.5 3.0 3.2 9214 chr3R 25832692 exon alpha4GT2 + chr3R 25837299 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-381 1857 chr3R 25905904 25905938 chr3R 25906099 25906133 10 193 1.5 5.0 3.2 2.4 229 chr3R 25905904 intron CR43259 - chr3R 25906018 intron CR43259 - chr3R 25906133 3` UTR CR43259 - chr3R_10_25905001 chr3R_25905001 RAL-381 1858 chr3R 26060404 26060434 chr3R 26060490 26060520 10 85 3.0 3.0 3.0 2.5 116 chr3R 26060404 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060520 intron CG14544 + chr3R_10_26060001 chr3R_26060001 RAL-381 1859 chr3R 26122463 26122477 chr3R 26122539 26122553 6 76 6.0 5.5 5.8 0.9 90 chr3R 26122463 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122553 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-381 1860 chr3R 26126551 26126561 chr3R 26126637 26126647 7 86 3.0 1.5 2.2 2.2 96 chr3R 26126551 intron CG31324 + chr3R 26126599 intron CG31324 + chr3R 26126647 intron CG31324 + chr3R_7_26125001 chr3R_26125001 RAL-381 1861 chr3R 26138388 26138424 chr3R 26138480 26138516 10 92 3.5 2.0 2.8 2.6 128 chr3R 26138388 intergenic not near genes chr3R 26138452 intergenic not near genes chr3R 26138516 intergenic not near genes chr3R_10_26135001 chr3R_26135001 RAL-381 1862 chr3R 26235494 26235522 chr3R 26235570 26235588 5 72 4.5 4.0 4.2 1.0 94 chr3R 26235494 5` UTR CR42745 + chr3R 26235541 5` UTR CR42745 + chr3R 26235588 5` UTR CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-381 1863 chr3R 26314855 26314888 chr3R 26315222 26315255 9 367 2.0 5.0 3.5 2.0 400 chr3R 26314855 intergenic not near genes chr3R 26315055 intergenic not near genes chr3R 26315255 intergenic not near genes chr3R_9_26315001 chr3R_26315001 RAL-381 1864 chr3R 26325365 26325377 chr3R 26325452 26325464 5 87 4.5 0.5 2.5 1.4 99 chr3R 26325365 intron CG33970 + chr3R 26325414 intron CG33970 + chr3R 26325464 intron CG33970 + chr3R_5_26325001 chr3R_26325001 RAL-381 1865 chr3R 26325378 26325383 chr3R 26325451 26325457 4 80 3.5 0.5 2.0 1.3 79 chr3R 26325378 intron CG33970 + chr3R 26325418 intron CG33970 + chr3R 26325457 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-381 1866 chr3R 26376327 26376346 chr3R 26385486 26385486 roo 7 9157 5.0 1.0 3.0 1.8 9159 chr3R 26376327 intergenic not near genes chr3R 26380906 intergenic not near genes chr3R 26385486 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-381 1867 chr3R 26456641 26456674 chr3R 26456719 26456752 13 76 3.0 3.5 3.2 3.1 111 chr3R 26456641 intergenic CG14237 +,Pdf - chr3R 26456696 intergenic CG14237 + chr3R 26456752 intergenic CG14237 + chr3R_13_26455001 chr3R_26455001 RAL-381 1868 chr3R 26510522 26510532 chr3R 26519577 26519587 roo 4 9055 4.5 3.5 4.0 0.8 9065 chr3R 26510522 intron plum - chr3R 26515054 intron plum - chr3R 26519587 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-381 1869 chr3R 26541007 26541024 chr3R 26541085 26541103 4 79 0.0 3.5 1.8 1.4 96 chr3R 26541007 intron scrib + chr3R 26541055 intron scrib + chr3R 26541103 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-381 1870 chr3R 26542062 26542066 chr3R 26542150 26542157 4 90 4.5 6.5 5.5 0.6 95 chr3R 26542062 intron scrib + chr3R 26542110 intron scrib + chr3R 26542157 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-381 1871 chr3R 26542070 26542079 chr3R 26542135 26542170 6 79 2.5 4.0 3.2 1.4 100 chr3R 26542070 intron scrib + chr3R 26542120 intron scrib + chr3R 26542170 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-381 1872 chr3R 26558328 26558361 chr3R 26565637 26565673 Stalker4 13 7309 2.0 2.0 2.0 4.3 7345 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565673 intron scrib + chr3R_13_26560001 chr3R_26560001 RAL-381 1873 chr3R 26575007 26575039 chr3R 26575086 26575118 12 78 3.0 3.5 3.2 2.9 111 chr3R 26575007 exon scrib + chr3R 26575062 intron scrib + chr3R 26575118 intron scrib + chr3R_12_26575001 chr3R_26575001 RAL-381 1874 chr3R 26587103 26587130 chr3R 26587200 26587227 7 97 1.5 7.0 4.2 1.3 124 chr3R 26587103 intron scrib + chr3R 26587165 intron scrib + chr3R 26587227 intron scrib + chr3R_7_26585001 chr3R_26585001 RAL-381 1875 chr3R 26604457 26604488 chr3R 26604538 26604553 6 77 3.5 3.0 3.2 1.4 96 chr3R 26604457 intergenic scrib + chr3R 26604505 intergenic scrib + chr3R 26604553 intergenic not near genes chr3R_6_26600001 chr3R_26600001 RAL-381 1876 chr3R 26641644 26641656 chr3R 26641726 26641743 6 86 7.5 3.5 5.5 0.9 99 chr3R 26641644 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641743 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-381 1877 chr3R 26642740 26642760 chr3R 26643133 26643153 jockey 10 392 7.0 8.5 7.8 1.1 413 chr3R 26642740 intergenic not near genes chr3R 26642946 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-381 1878 chr3R 26669662 26669691 chr3R 26669744 26669773 11 82 3.0 2.0 2.5 3.1 111 chr3R 26669662 intron beat-VII - chr3R 26669718 intron beat-VII - chr3R 26669773 intron beat-VII - chr3R_11_26665001 chr3R_26665001 RAL-381 1879 chr3R 26715660 26715683 chr3R 26715748 26715773 4 86 5.5 5.0 5.2 0.6 113 chr3R 26715660 3` UTR CG6425 - chr3R 26715716 3` UTR CG6425 - chr3R 26715773 3` UTR CG6425 - chr3R_4_26715001 chr3R_26715001 RAL-381 1880 chr3R 26767370 26767393 chr3R 26767441 26767471 9 76 4.5 5.0 4.8 1.6 101 chr3R 26767370 intergenic not near genes chr3R 26767420 intergenic not near genes chr3R 26767471 intergenic not near genes chr3R_9_26765001 chr3R_26765001 RAL-381 1881 chr3R 26810553 26810583 chr3R 26811038 26811068 roo 8 484 4.0 4.0 4.0 1.6 515 chr3R 26810553 intron Tl + chr3R 26810810 intron Tl + chr3R 26811068 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-381 1882 chr3R 26844716 26844742 chr3R 26844795 26844821 12 79 4.0 3.5 3.8 2.5 105 chr3R 26844716 intron Lerp - chr3R 26844768 intron Lerp - chr3R 26844821 intron Lerp - chr3R_12_26840001 chr3R_26840001 RAL-381 1883 chr3R 26845571 26845605 chr3R 26845651 26845685 15 75 5.0 2.0 3.5 3.3 114 chr3R 26845571 intron Lerp - chr3R 26845628 intron Lerp - chr3R 26845685 intron Lerp - chr3R_15_26845001 chr3R_26845001 RAL-381 1884 chr3R 26885686 26885720 chr3R 26885786 26885787 22 97 5.5 7.0 6.2 3.1 101 chr3R 26885686 intron T48 + chr3R 26885736 intron T48 + chr3R 26885787 intron T48 + chr3R_22_26885001 chr3R_26885001 RAL-381 1885 chr3R 27007410 27007436 chr3R 27016545 27016571 roo 8 9135 3.0 1.5 2.2 2.5 9161 chr3R 27007410 intron RYa-R + chr3R 27011990 intron RYa-R + chr3R 27016571 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-381 1886 chr3R 27019513 27019544 chr3R 27019608 27019640 10 91 5.0 6.0 5.5 1.5 127 chr3R 27019513 intron,exon RYa-R +,CG17191 - chr3R 27019576 intron,exon RYa-R +,CG17191 - chr3R 27019640 intron,intron RYa-R +,CG17191 - chr3R_10_27015001 chr3R_27015001 RAL-381 1887 chr3R 27028727 27028755 chr3R 27028806 27028834 7 79 3.5 1.5 2.5 2.0 107 chr3R 27028727 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028834 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-381 1888 chr3R 27051672 27051693 chr3R 27051761 27051784 5 90 2.0 0.5 1.2 2.3 112 chr3R 27051672 intron RYa-R + chr3R 27051728 intron RYa-R + chr3R 27051784 intron RYa-R + chr3R_5_27050001 chr3R_27050001 RAL-381 1889 chr3R 27073667 27073683 chr3R 27073750 27073766 4 82 4.5 2.5 3.5 0.9 99 chr3R 27073667 intergenic not near genes chr3R 27073716 intergenic not near genes chr3R 27073766 intergenic not near genes chr3R_4_27070001 chr3R_27070001 RAL-381 1890 chr3R 27101549 27101564 chr3R 27101655 27101669 10 105 3.5 5.0 4.2 1.9 120 chr3R 27101549 exon CG17189 + chr3R 27101609 intron CG17189 + chr3R 27101669 intron CG17189 + chr3R_10_27100001 chr3R_27100001 RAL-381 1891 chr3R 27107161 27107192 chr3R 27107385 27107416 17 223 3.0 5.5 4.2 3.3 255 chr3R 27107161 intergenic not near genes chr3R 27107288 intergenic not near genes chr3R 27107416 intergenic not near genes chr3R_17_27105001 chr3R_27105001 RAL-381 1892 chr3R 27140523 27140545 chr3R 27148133 27148155 412 11 7610 6.0 6.0 6.0 1.6 7632 chr3R 27140523 intron CG6051 - chr3R 27144339 intron CG6051 - chr3R 27148155 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-381 1893 chr3R 27301278 27301304 chr3R 27301359 27301391 7 86 2.0 4.0 3.0 1.8 113 chr3R 27301278 intron CG3339 - chr3R 27301334 intron CG3339 - chr3R 27301391 intron CG3339 - chr3R_7_27300001 chr3R_27300001 RAL-381 1894 chr3R 27315994 27316011 chr3R 27316070 27316087 8 75 8.0 3.5 5.8 1.2 93 chr3R 27315994 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316087 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-381 1895 chr3R 27342792 27342821 chr3R 27351373 27351402 Tirant 8 8581 3.0 2.0 2.5 2.3 8610 chr3R 27342792 intron CG42534 + chr3R 27347097 intron CG42534 + chr3R 27351402 intron CG42534 + chr3R_8_27345001 chr3R_27345001 RAL-381 1896 chr3R 27435330 27435357 chr3R 27435436 27435467 8 106 2.5 5.5 4.0 1.6 137 chr3R 27435330 intron side - chr3R 27435398 intron side - chr3R 27435467 intron side - chr3R_8_27435001 chr3R_27435001 RAL-381 1897 chr3R 27443399 27443417 chr3R 27443476 27443494 4 77 2.5 2.0 2.2 1.2 95 chr3R 27443399 intergenic not near genes chr3R 27443446 intergenic not near genes chr3R 27443494 intergenic not near genes chr3R_4_27440001 chr3R_27440001 RAL-381 1898 chr3R 27494998 27495035 chr3R 27496438 27496476 15 1438 3.0 3.5 3.2 3.6 1478 chr3R 27494998 intergenic not near genes chr3R 27495737 intergenic not near genes chr3R 27496476 intergenic not near genes chr3R_15_27495001 chr3R_27495001 RAL-381 1899 chr3R 27648606 27648870 chr3R 27648672 27648947 12 75 7.5 1.0 4.2 2.3 341 chr3R 27648606 intron tau - chr3R 27648776 intron tau - chr3R 27648947 intron tau - chr3R_12_27645001 chr3R_27645001 RAL-381 1900 chr3R 27686802 27686831 chr3R 27686889 27686921 7 90 4.0 3.0 3.5 1.6 119 chr3R 27686802 intron,intron CG31055 -,CG12880 + chr3R 27686862 intron,intron CG31055 -,CG12880 + chr3R 27686921 intron,intron CG31055 -,CG12880 + chr3R_7_27685001 chr3R_27685001 RAL-381 1901 chr3R 27725562 27725596 chr3R 27731004 27731038 I-element 8 5442 2.5 1.0 1.8 2.9 5476 chr3R 27725562 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731038 intergenic not near genes chr3R_8_27725001 chr3R_27725001 RAL-381 1902 chr3R 27731203 27731228 chr3R 27731284 27731309 10 78 5.5 5.5 5.5 1.5 106 chr3R 27731203 intergenic not near genes chr3R 27731256 intergenic not near genes chr3R 27731309 intergenic not near genes chr3R_10_27730001 chr3R_27730001 RAL-381 1903 chr3R 27779276 27779288 chr3R 27779349 27779365 9 73 4.5 9.5 7.0 1.1 89 chr3R 27779276 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_9_27775001 chr3R_27775001 RAL-381 1904 chr3R 27799939 27799964 chr3R 27800021 27800046 5 81 2.0 7.0 4.5 0.9 107 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-381 1905 chr3R 27856764 27856787 chr3R 27858247 27858269 hopper2 11 1483 5.0 3.0 4.0 2.2 1505 chr3R 27856764 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_11_27855001 chr3R_27855001 RAL-381 1906 chr3R 27862952 27862979 chr3R 27868257 27868284 Transpac 4 5304 8.0 2.5 5.2 0.6 5332 chr3R 27862952 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-381 1907 chr3R 27875702 27875733 chr3R 27882757 27882788 297 14 7054 1.0 4.5 2.8 3.7 7086 chr3R 27875702 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_14_27875001 chr3R_27875001 RAL-381 1908 chr3R 27886452 27886453 chr3R 27886559 27886563 4 109 7.0 1.5 4.2 0.8 111 chr3R 27886452 intron CG34353 - chr3R 27886508 intron CG34353 - chr3R 27886563 intron CG34353 - chr3R_4_27885001 chr3R_27885001 RAL-381 1909 chr3R 6431577 6431584 chr3R 28018219 28018234 4 21586643 5.5 10.5 8.0 0.4 21586657 chr3R 6431577 intron gpp + chr3R 17224906 intergenic not near genes chr3R 28018234 intergenic not near genes chr3R_4_17220001 chr3R_17220001 RAL-381 1910 chr3R 28068493 28068527 chr3R 28073935 28073969 I-element 8 5439 1.5 4.0 2.8 2.1 5476 chr3R 28068493 intron CG34362 + chr3R 28071231 intron CG34362 + chr3R 28073969 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-381 1911 chr3R 28099269 28099304 chr3R 28099428 28099463 7 159 2.0 2.5 2.2 2.2 194 chr3R 28099269 intergenic not near genes chr3R 28099366 intergenic not near genes chr3R 28099463 intergenic not near genes chr3R_7_28095001 chr3R_28095001 RAL-381 1912 chr3R 28103322 28103342 chr3R 28103415 28103435 5 91 6.0 4.5 5.2 0.8 113 chr3R 28103322 intergenic not near genes chr3R 28103378 intergenic not near genes chr3R 28103435 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-381 1913 chr3R 28215815 28215849 chr3R 28215892 28215926 12 76 4.0 5.0 4.5 2.2 111 chr3R 28215815 intron CG34354 + chr3R 28215870 intron CG34354 + chr3R 28215926 intron CG34354 + chr3R_12_28215001 chr3R_28215001 RAL-381 1914 chr3R 28229204 28229233 chr3R 28229334 28229363 5 129 0.0 1.5 0.8 2.8 159 chr3R 28229204 intron CG34354 + chr3R 28229284 intron CG34354 + chr3R 28229363 intron CG34354 + chr3R_5_28225001 chr3R_28225001 RAL-381 1915 chr3R 28253330 28253362 chr3R 28255840 28255872 jockey 12 2510 5.0 3.0 4.0 2.4 2542 chr3R 28253330 intergenic not near genes chr3R 28254601 intergenic not near genes chr3R 28255872 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-381 1916 chr3R 28302104 28302124 chr3R 28302543 28302563 jockey 6 439 3.0 5.5 4.2 1.2 459 chr3R 28302104 intergenic not near genes chr3R 28302334 intergenic not near genes chr3R 28302563 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-381 1917 chr3R 28331509 28331528 chr3R 28331586 28331607 4 78 2.0 0.5 1.2 1.8 98 chr3R 28331509 intron larp - chr3R 28331558 intron larp - chr3R 28331607 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-381 1918 chr3R 28345649 28345667 chr3R 28345725 28345742 4 76 0.5 4.5 2.5 1.1 93 chr3R 28345649 intergenic Moca-cyp + chr3R 28345696 intergenic not near genes chr3R 28345742 intergenic not near genes chr3R_4_28345001 chr3R_28345001 RAL-381 1919 chr3R 28407703 28407739 chr3R 28407789 28407825 16 85 3.0 6.0 4.5 2.9 122 chr3R 28407703 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407825 intergenic not near genes chr3R_16_28405001 chr3R_28405001 RAL-381 1920 chr3R 28420894 28420906 chr3R 28421010 28421022 4 116 1.0 2.5 1.8 1.4 128 chr3R 28420894 intron beat-VI + chr3R 28420958 intron beat-VI + chr3R 28421022 intron beat-VI + chr3R_4_28420001 chr3R_28420001 RAL-381 1921 chr3R 28426493 28426503 chr3R 28426569 28426589 4 84 0.0 6.0 3.0 1.0 96 chr3R 28426493 intron beat-VI + chr3R 28426541 intron beat-VI + chr3R 28426589 intron beat-VI + chr3R_4_28425001 chr3R_28425001 RAL-381 1922 chr3R 28478418 28478447 chr3R 28478499 28478527 14 79 3.0 5.0 4.0 2.8 109 chr3R 28478418 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478527 intergenic not near genes chr3R_14_28475001 chr3R_28475001 RAL-381 1923 chr3R 28479149 28479162 chr3R 28479232 28479245 6 82 2.5 4.0 3.2 1.4 96 chr3R 28479149 intergenic not near genes chr3R 28479197 intergenic not near genes chr3R 28479245 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-381 1924 chr3R 28484353 28484375 chr3R 28486270 28486292 55 1918 45.5 93.0 69.2 0.8 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_55_28485001 chr3R_28485001 RAL-381 1925 chr3R 28633193 28633221 chr3R 28633273 28633285 10 78 7.0 6.0 6.5 1.3 92 chr3R 28633193 intron CG10011 - chr3R 28633239 intron CG10011 - chr3R 28633285 intron CG10011 - chr3R_10_28630001 chr3R_28630001 RAL-381 1926 chr3R 28758294 28758303 chr3R 28763911 28763920 roo 7 5617 4.5 0.0 2.2 2.2 5626 chr3R 28758294 intergenic aqrs - chr3R 28761107 intergenic not near genes chr3R 28763920 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-381 1927 chr3R 28763900 28763920 chr3R 28771343 28771363 Stalker4 5 7442 0.0 2.5 1.2 2.3 7463 chr3R 28763900 intergenic not near genes chr3R 28767632 intergenic not near genes chr3R 28771363 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-381 1928 chr3R 28792884 28792901 chr3R 28797970 28797996 jockey 6 5091 2.0 2.0 2.0 2.0 5112 chr3R 28792884 intergenic not near genes chr3R 28795440 intergenic not near genes chr3R 28797996 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-381 1929 chr3R 28811570 28811602 chr3R 28811716 28811748 5 146 1.5 0.5 1.0 2.5 178 chr3R 28811570 intergenic wdn - chr3R 28811659 intergenic wdn -,CG1646 + chr3R 28811748 intergenic CG1646 +,wdn - chr3R_5_28810001 chr3R_28810001 RAL-381 1930 chr3R 21907534 21907536 chr3R 28831799 28831804 100 6924266 32.0 20.0 26.0 3.7 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_100_25365001 chr3R_25365001 RAL-381 1931 chr3R 28842859 28842863 chr3R 28842971 28842976 4 113 2.5 4.5 3.5 0.9 117 chr3R 28842859 intron Apc - chr3R 28842918 intron Apc - chr3R 28842976 intron Apc - chr3R_4_28840001 chr3R_28840001 RAL-381 1932 chr3R 28842865 28842884 chr3R 28842964 28842997 12 111 0.5 3.0 1.8 4.3 132 chr3R 28842865 intron Apc - chr3R 28842931 intron Apc - chr3R 28842997 intron Apc - chr3R_12_28840001 chr3R_28840001 RAL-381 1933 chr3R 23893831 23893833 chr3R 28965942 28965944 4 5072111 1.5 16.5 9.0 0.4 5072113 chr3R 23893831 intergenic sba -,tbrd-1 - chr3R 26429888 intergenic not near genes chr3R 28965944 intron CG14521 - chr3R_4_26425001 chr3R_26425001 RAL-381 1934 chr3R 21907534 21907536 chr3R 29013339 29013339 5 7105804 32.0 14.5 23.2 0.2 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-381 1935 chr3R 21907534 21907536 chr3R 29013340 29013340 11 7105805 32.0 14.5 23.2 0.5 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_11_25460001 chr3R_25460001 RAL-381 1936 chr3R 29032749 29032778 chr3R 29032823 29032855 13 74 3.5 1.5 2.5 3.7 106 chr3R 29032749 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032802 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032855 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_13_29030001 chr3R_29030001 RAL-381 1937 chr3R 29054265 29054296 chr3R 29054360 29054391 12 95 2.0 3.5 2.8 3.2 126 chr3R 29054265 intergenic CG11843 +,CG11842 + chr3R 29054328 intergenic CG11843 +,CG11842 + chr3R 29054391 5` UTR CG11843 + chr3R_12_29050001 chr3R_29050001 RAL-381 1938 chr3R 29079378 29079403 chr3R 29080750 29080775 NOF 8 1372 3.0 3.0 3.0 2.0 1397 chr3R 29079378 intron CG11873 + chr3R 29080076 intron CG11873 + chr3R 29080775 intron CG11873 + chr3R_8_29080001 chr3R_29080001 RAL-381 1939 chr3R 29141546 29141579 chr3R 29141625 29141658 5 79 0.0 5.0 2.5 1.4 112 chr3R 29141546 intron CG14516 + chr3R 29141602 intron CG14516 + chr3R 29141658 intron CG14516 + chr3R_5_29140001 chr3R_29140001 RAL-381 1940 chr3R 29237265 29237285 chr3R 29239266 29239306 8 2016 30.5 7.5 19.0 0.4 2041 chr3R 29237265 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-381 1941 chr3R 29238777 29238791 chr3R 29238891 29238905 9 114 3.5 5.0 4.2 1.7 128 chr3R 29238777 intergenic CG31427 -,CG11951 - chr3R 29238841 3` UTR CG31427 - chr3R 29238905 3` UTR CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-381 1942 chr3R 29240488 29240498 chr3R 29240572 29240582 4 84 0.5 0.5 0.5 2.7 94 chr3R 29240488 intergenic CG31445 -,CG31427 - chr3R 29240535 intergenic CG31445 -,CG31427 - chr3R 29240582 3` UTR CG31445 - chr3R_4_29240001 chr3R_29240001 RAL-381 1943 chr3R 29283670 29283676 chr3R 29283746 29283754 6 80 5.0 6.0 5.5 0.9 84 chr3R 29283670 intergenic not near genes chr3R 29283712 intergenic not near genes chr3R 29283754 intergenic not near genes chr3R_6_29280001 chr3R_29280001 RAL-381 1944 chr3R 29319828 29319858 chr3R 29320147 29320177 jockey 5 319 3.0 6.0 4.5 0.9 349 chr3R 29319828 intergenic Cnx99A - chr3R 29320002 intergenic Cnx99A - chr3R 29320177 intergenic not near genes chr3R_5_29320001 chr3R_29320001 RAL-381 1945 chr3R 29406616 29406648 chr3R 29407902 29407926 jockey 13 1283 4.5 7.0 5.8 1.9 1310 chr3R 29406616 intron Ptp99A + chr3R 29407271 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_13_29405001 chr3R_29405001 RAL-381 1946 chr3R 29415438 29415462 chr3R 29415622 29415646 8 183 5.5 3.5 4.5 1.5 208 chr3R 29415438 intron Ptp99A + chr3R 29415542 intron Ptp99A + chr3R 29415646 intron Ptp99A + chr3R_8_29415001 chr3R_29415001 RAL-381 1947 chr3R 29447822 29447826 chr3R 29447929 29447933 4 107 2.5 2.5 2.5 1.1 111 chr3R 29447822 intron Ptp99A + chr3R 29447878 intron Ptp99A + chr3R 29447933 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-381 1948 chr3R 29447834 29447850 chr3R 29447928 29447955 6 103 1.0 2.0 1.5 2.4 121 chr3R 29447834 intron Ptp99A + chr3R 29447894 intron Ptp99A + chr3R 29447955 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-381 1949 chr3R 29449355 29449391 chr3R 29449432 29449462 6 76 3.0 3.0 3.0 1.5 107 chr3R 29449355 intron Ptp99A + chr3R 29449408 intron Ptp99A + chr3R 29449462 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-381 1950 chr3R 29472009 29472029 chr3R 29472100 29472122 9 90 7.0 3.0 5.0 1.5 113 chr3R 29472009 intron Ptp99A + chr3R 29472066 intron Ptp99A + chr3R 29472122 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-381 1951 chr3R 29498647 29498678 chr3R 29498722 29498730 13 72 3.5 2.5 3.0 3.2 83 chr3R 29498647 exon CG2010 + chr3R 29498688 exon CG2010 + chr3R 29498730 3` UTR CG2010 + chr3R_13_29495001 chr3R_29495001 RAL-381 1952 chr3R 29539433 29539457 chr3R 29539509 29539533 9 76 3.5 0.0 1.8 3.2 100 chr3R 29539433 intergenic not near genes chr3R 29539483 intergenic not near genes chr3R 29539533 intergenic not near genes chr3R_9_29535001 chr3R_29535001 RAL-381 1953 chr3R 29576740 29576751 chr3R 29576843 29576858 6 106 1.5 0.0 0.8 3.3 118 chr3R 29576740 intergenic not near genes chr3R 29576799 intergenic not near genes chr3R 29576858 intergenic not near genes chr3R_6_29575001 chr3R_29575001 RAL-381 1954 chr3R 29590378 29590401 chr3R 29590471 29590494 15 93 2.5 2.0 2.2 4.7 116 chr3R 29590378 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590494 intron CG31041 - chr3R_15_29590001 chr3R_29590001 RAL-381 1955 chr3R 29627560 29627715 chr3R 29627651 29627825 16 96 4.5 5.0 4.8 2.8 265 chr3R 29627560 intergenic not near genes chr3R 29627692 intergenic not near genes chr3R 29627825 intergenic not near genes chr3R_16_29625001 chr3R_29625001 RAL-381 1956 chr3R 29639170 29639193 chr3R 29639274 29639274 10 102 3.5 5.0 4.2 1.9 104 chr3R 29639170 intron Dop1R2 - chr3R 29639222 intron Dop1R2 - chr3R 29639274 intron Dop1R2 - chr3R_10_29635001 chr3R_29635001 RAL-381 1957 chr3R 29854765 29854796 chr3R 29854845 29854876 11 79 1.0 2.5 1.8 3.9 111 chr3R 29854765 3` UTR dgt1 - chr3R 29854820 3` UTR dgt1 - chr3R 29854876 exon dgt1 - chr3R_11_29850001 chr3R_29850001 RAL-381 1958 chr3R 29882018 29882052 chr3R 29891175 29891209 roo 9 9157 4.0 2.5 3.2 2.1 9191 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-381 1959 chr3R 29950576 29950595 chr3R 29950653 29950672 12 76 4.5 3.5 4.0 2.4 96 chr3R 29950576 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950672 intergenic TkR99D - chr3R_12_29950001 chr3R_29950001 RAL-381 1960 chr3R 29963479 29963511 chr3R 29963580 29963613 11 102 1.5 2.5 2.0 3.7 134 chr3R 29963479 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963613 intron TkR99D - chr3R_11_29960001 chr3R_29960001 RAL-381 1961 chr3R 29966063 29966075 chr3R 29966139 29966150 5 76 4.0 9.0 6.5 0.7 87 chr3R 29966063 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966150 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-381 1962 chr3R 30001733 30001758 chr3R 30001809 30001832 6 73 7.5 7.0 7.2 0.7 99 chr3R 30001733 intron Tace + chr3R 30001782 intron Tace + chr3R 30001832 intron Tace + chr3R_6_30000001 chr3R_30000001 RAL-381 1963 chr3R 30051301 30051307 chr3R 30051379 30051386 5 79 3.0 5.0 4.0 1.0 85 chr3R 30051301 intron,intron CG15528 -,CR44046 + chr3R 30051344 intron,intron CG15528 -,CR44046 + chr3R 30051386 intron,intron CG15528 -,CR44046 + chr3R_5_30050001 chr3R_30050001 RAL-381 1964 chr3R 30084852 30084886 chr3R 30086319 30086353 hobo 13 1466 4.0 2.5 3.2 3.1 1501 chr3R 30084852 intron sima + chr3R 30085602 intron sima + chr3R 30086353 intron sima + chr3R_13_30085001 chr3R_30085001 RAL-381 1965 chr3R 30182754 30182783 chr3R 30182892 30182922 10 137 3.0 2.0 2.5 2.9 168 chr3R 30182754 intergenic not near genes chr3R 30182838 intergenic not near genes chr3R 30182922 intergenic not near genes chr3R_10_30180001 chr3R_30180001 RAL-381 1966 chr3R 30238764 30238776 chr3R 30239928 30239940 1360 5 1164 4.0 0.0 2.0 1.7 1176 chr3R 30238764 intergenic not near genes chr3R 30239352 intergenic not near genes chr3R 30239940 intergenic not near genes chr3R_5_30235001 chr3R_30235001 RAL-381 1967 chr3R 30268412 30268447 chr3R 30268493 30268525 7 76 4.5 3.5 4.0 1.4 113 chr3R 30268412 intergenic not near genes chr3R 30268468 intergenic not near genes chr3R 30268525 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-381 1968 chr3R 30300728 30300742 chr3R 30300809 30300816 4 79 1.5 8.5 5.0 0.7 88 chr3R 30300728 intron hdc + chr3R 30300772 intron hdc + chr3R 30300816 intron hdc + chr3R_4_30300001 chr3R_30300001 RAL-381 1969 chr3R 30330505 30330524 chr3R 30330574 30330597 10 74 8.0 2.5 5.2 1.6 92 chr3R 30330505 intron hdc + chr3R 30330551 intron hdc + chr3R 30330597 intron hdc + chr3R_10_30330001 chr3R_30330001 RAL-381 1970 chr3R 30332462 30332480 chr3R 30332540 30332555 5 78 1.5 2.5 2.0 1.7 93 chr3R 30332462 intron hdc + chr3R 30332508 intron hdc + chr3R 30332555 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-381 1971 chr3R 30396216 30396232 chr3R 30404482 30404498 roo 4 8266 3.5 5.5 4.5 0.7 8282 chr3R 30396216 intergenic not near genes chr3R 30400357 intergenic not near genes chr3R 30404498 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-381 1972 chr3R 30426954 30426973 chr3R 30427033 30427052 6 79 1.5 0.0 0.8 3.3 98 chr3R 30426954 intron CG2218 - chr3R 30427003 intron CG2218 - chr3R 30427052 intron CG2218 - chr3R_6_30425001 chr3R_30425001 RAL-381 1973 chr3R 30461491 30461520 chr3R 30461608 30461637 11 116 2.0 4.0 3.0 2.8 146 chr3R 30461491 intron CDase + chr3R 30461564 intron CDase + chr3R 30461637 intron CDase + chr3R_11_30460001 chr3R_30460001 RAL-381 1974 chr3R 30480479 30480514 chr3R 30482940 30482982 jockey 18 2465 2.0 7.0 4.5 3.3 2503 chr3R 30480479 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482982 intron PH4alphaEFB + chr3R_18_30480001 chr3R_30480001 RAL-381 1975 chr3R 30498409 30498433 chr3R 30498609 30498633 8 200 0.0 2.5 1.2 3.6 224 chr3R 30498409 intron PH4alphaNE1 - chr3R 30498521 intron PH4alphaNE1 - chr3R 30498633 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-381 1976 chr3R 30560375 30560384 chr3R 30560439 30560463 7 73 4.0 7.0 5.5 1.1 88 chr3R 30560375 intron tmod + chr3R 30560419 intron tmod + chr3R 30560463 intron tmod + chr3R_7_30560001 chr3R_30560001 RAL-381 1977 chr3R 30566740 30566774 chr3R 30566835 30566859 18 91 4.0 7.0 5.5 2.8 119 chr3R 30566740 intron tmod + chr3R 30566800 intron tmod + chr3R 30566859 intron tmod + chr3R_18_30565001 chr3R_30565001 RAL-381 1978 chr3R 30677824 30677855 chr3R 30677926 30677957 7 102 2.0 4.0 3.0 1.8 133 chr3R 30677824 intergenic not near genes chr3R 30677890 intergenic not near genes chr3R 30677957 intergenic not near genes chr3R_7_30675001 chr3R_30675001 RAL-381 1979 chr3R 30678635 30678653 chr3R 30678711 30678729 6 76 4.0 2.5 3.2 1.4 94 chr3R 30678635 intergenic not near genes chr3R 30678682 intergenic not near genes chr3R 30678729 intergenic not near genes chr3R_6_30675001 chr3R_30675001 RAL-381 1980 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 5 7469 5.0 0.0 2.5 1.4 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-381 1981 chr3R 30753352 30753357 chr3R 30753438 30753443 4 86 1.5 3.0 2.2 1.2 91 chr3R 30753352 intergenic not near genes chr3R 30753398 intergenic not near genes chr3R 30753443 intergenic not near genes chr3R_4_30750001 chr3R_30750001 RAL-381 1982 chr3R 30813206 30813240 chr3R 30813282 30813316 12 74 3.0 3.0 3.0 3.0 110 chr3R 30813206 intron cindr + chr3R 30813261 intron cindr + chr3R 30813316 intron cindr + chr3R_12_30810001 chr3R_30810001 RAL-381 1983 chr3R 30818818 30818845 chr3R 30820376 30820410 1360 6 1564 2.5 3.0 2.8 1.6 1592 chr3R 30818818 intron cindr + chr3R 30819614 intron cindr + chr3R 30820410 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-381 1984 chr3R 30850254 30850367 chr3R 30850346 30850452 14 87 0.0 0.0 0.0 14.0 198 chr3R 30850254 intergenic not near genes chr3R 30850353 intergenic not near genes chr3R 30850452 intergenic not near genes chr3R_14_30850001 chr3R_30850001 RAL-381 1985 chr3R 30973134 30973154 chr3R 30973295 30973314 5 161 0.0 3.0 1.5 2.0 180 chr3R 30973134 intron 5-HT7 - chr3R 30973224 intron 5-HT7 - chr3R 30973314 intron 5-HT7 - chr3R_5_30970001 chr3R_30970001 RAL-381 1986 chr3R 30978919 30978937 chr3R 30979001 30979019 6 81 6.0 3.0 4.5 1.1 100 chr3R 30978919 intron 5-HT7 - chr3R 30978969 intron 5-HT7 - chr3R 30979019 intron 5-HT7 - chr3R_6_30975001 chr3R_30975001 RAL-381 1987 chr3R 31042109 31042140 chr3R 31042196 31042227 7 87 2.5 2.5 2.5 2.0 118 chr3R 31042109 intron CanA1 + chr3R 31042168 intron CanA1 + chr3R 31042227 intron CanA1 + chr3R_7_31040001 chr3R_31040001 RAL-381 1988 chr3R 31062647 31062682 chr3R 31062728 31062763 10 80 4.5 1.5 3.0 2.5 116 chr3R 31062647 intergenic not near genes chr3R 31062705 intergenic not near genes chr3R 31062763 intergenic not near genes chr3R_10_31060001 chr3R_31060001 RAL-381 1989 chr3R 31074231 31074250 chr3R 31081829 31081848 springer 5 7598 7.0 0.0 3.5 1.1 7617 chr3R 31074231 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081848 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-381 1990 chr3R 31105220 31105245 chr3R 31105477 31105484 8 253 3.5 7.5 5.5 1.2 264 chr3R 31105220 intergenic not near genes chr3R 31105352 intergenic not near genes chr3R 31105484 intergenic not near genes chr3R_8_31105001 chr3R_31105001 RAL-381 1991 chr3R 31270898 31270907 chr3R 31270980 31270989 5 82 8.5 0.0 4.2 1.0 91 chr3R 31270898 intergenic not near genes chr3R 31270944 intergenic not near genes chr3R 31270989 intergenic not near genes chr3R_5_31270001 chr3R_31270001 RAL-381 1992 chr3R 31279374 31279393 chr3R 31285565 31285583 diver 6 6189 9.5 5.0 7.2 0.7 6209 chr3R 31279374 intergenic not near genes chr3R 31282478 intergenic not near genes chr3R 31285583 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-381 1993 chr3R 31279394 31279404 chr3R 31285563 31285594 diver 11 6188 8.0 4.5 6.2 1.5 6200 chr3R 31279394 intergenic not near genes chr3R 31282494 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-381 1994 chr3R 31413100 31413123 chr3R 31418289 31418307 copia 9 5197 1.5 6.0 3.8 1.9 5207 chr3R 31413100 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418307 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-381 1995 chr3R 31426880 31426907 chr3R 31426972 31426992 4 90 2.5 2.0 2.2 1.2 112 chr3R 31426880 intron Gprk2 + chr3R 31426936 intron Gprk2 + chr3R 31426992 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-381 1996 chr3R 31431106 31431131 chr3R 31431192 31431216 10 85 5.0 3.5 4.2 1.9 110 chr3R 31431106 intron Gprk2 + chr3R 31431161 intron Gprk2 + chr3R 31431216 intron Gprk2 + chr3R_10_31430001 chr3R_31430001 RAL-381 1997 chr3R 31442270 31442295 chr3R 31442355 31442380 24 85 6.0 5.5 5.8 3.5 110 chr3R 31442270 intron Gprk2 + chr3R 31442325 intron Gprk2 + chr3R 31442380 intron Gprk2 + chr3R_24_31440001 chr3R_31440001 RAL-381 1998 chr3R 31527589 31527613 chr3R 31527677 31527702 15 89 6.0 2.0 4.0 3.0 113 chr3R 31527589 intergenic not near genes chr3R 31527646 intergenic not near genes chr3R 31527702 intergenic not near genes chr3R_15_31525001 chr3R_31525001 RAL-381 1999 chr3R 31530828 31530849 chr3R 31531144 31531167 9 317 2.5 3.5 3.0 2.2 339 chr3R 31530828 intergenic not near genes chr3R 31530998 intergenic not near genes chr3R 31531167 intergenic not near genes chr3R_9_31530001 chr3R_31530001 RAL-381 2000 chr3R 31655029 31655058 chr3R 31655106 31655131 6 76 3.5 2.5 3.0 1.5 102 chr3R 31655029 intron kek6 + chr3R 31655080 intron kek6 + chr3R 31655131 intron kek6 + chr3R_6_31655001 chr3R_31655001 RAL-381 2001 chr3R 31691530 31691563 chr3R 31696296 31696329 Doc 17 4763 4.5 7.0 5.8 2.5 4799 chr3R 31691530 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_17_31690001 chr3R_31690001 RAL-381 2002 chr3R 31699730 31699753 chr3R 31699803 31699835 8 79 0.5 4.0 2.2 2.5 105 chr3R 31699730 intergenic not near genes chr3R 31699782 intergenic not near genes chr3R 31699835 intergenic not near genes chr3R_8_31695001 chr3R_31695001 RAL-381 2003 chr3R 31831539 31831570 chr3R 31831615 31831649 22 77 4.5 5.5 5.0 3.7 110 chr3R 31831539 intron RhoGAP100F + chr3R 31831594 intron RhoGAP100F + chr3R 31831649 intron RhoGAP100F + chr3R_22_31830001 chr3R_31830001 RAL-381 2004 chr3R 31870064 31870096 chr3R 31870144 31870176 14 80 7.0 5.5 6.2 1.9 112 chr3R 31870064 intron heph - chr3R 31870120 intron heph - chr3R 31870176 intron heph - chr3R_14_31870001 chr3R_31870001 RAL-381 2005 chr3R 31897843 31897878 chr3R 31897983 31898016 11 139 2.0 2.0 2.0 3.7 173 chr3R 31897843 intron heph - chr3R 31897930 intron heph - chr3R 31898016 intron heph - chr3R_11_31895001 chr3R_31895001 RAL-381 2006 chr3R 31911676 31911707 chr3R 31911762 31911793 8 85 3.0 3.0 3.0 2.0 117 chr3R 31911676 intron heph - chr3R 31911734 intron heph - chr3R 31911793 intron heph - chr3R_8_31910001 chr3R_31910001 RAL-381 2007 chr3R 31930563 31930593 chr3R 31930645 31930675 16 80 4.0 3.5 3.8 3.3 112 chr3R 31930563 intron heph - chr3R 31930619 intron heph - chr3R 31930675 intron heph - chr3R_16_31930001 chr3R_31930001 RAL-381 2008 chr3R 31997992 31998022 chr3R 32005462 32005475 blood 15 7466 5.5 4.5 5.0 2.5 7483 chr3R 31997992 intron heph - chr3R 32001734 intron heph - chr3R 32005475 intron heph - chr3R_15_32000001 chr3R_32000001 RAL-381 2009 chr3R 32016715 32016743 chr3R 32016793 32016822 7 77 1.0 3.0 2.0 2.3 107 chr3R 32016715 5` UTR CR45557 + chr3R 32016768 5` UTR CR45557 + chr3R 32016822 5` UTR CR45557 + chr3R_7_32015001 chr3R_32015001 RAL-381 2010 chr3R 32034260 32034294 chr3R 32034343 32034377 15 82 2.5 2.0 2.2 4.7 117 chr3R 32034260 intergenic not near genes chr3R 32034318 intergenic not near genes chr3R 32034377 intergenic not near genes chr3R_15_32030001 chr3R_32030001 RAL-381 2011 chr4 76490 76504 chr4 81933 81937 I-element 6 5441 7.5 2.5 5.0 1.0 5447 chr4 76490 intron pan + chr4 79214 intron pan + chr4 81937 intron pan + chr4_6_75001 chr4_75001 RAL-381 2012 chr4 671604 671638 chr4 680187 680221 Tirant 11 8582 2.0 6.0 4.0 2.2 8617 chr4 671604 intron CG11360 + chr4 675912 intron CG11360 + chr4 680221 intron CG11360 + chr4_11_675001 chr4_675001 RAL-381 2013 chr4 852898 852918 chr4 853262 853282 7 364 1.0 3.5 2.2 2.2 384 chr4 852898 intergenic not near genes chr4 853090 intergenic not near genes chr4 853282 intergenic CG11148 - chr4_7_850001 chr4_850001 RAL-381 2014 chrX 178892 178913 chrX 178975 178980 4 79 2.5 0.5 1.5 1.6 88 chrX 178892 intron tyn + chrX 178936 intron tyn + chrX 178980 intron tyn + chrX_4_175001 chrX_175001 RAL-381 2015 chrX 201041 201064 chrX 201115 201142 4 77 3.0 4.0 3.5 0.9 101 chrX 201041 intergenic not near genes chrX 201092 intergenic not near genes chrX 201142 intergenic not near genes chrX_4_200001 chrX_200001 RAL-381 2016 chrX 318484 318501 chrX 323570 323587 flea 6 5086 1.5 3.5 2.5 1.7 5103 chrX 318484 intron,intron CG3777 +,CG32816 - chrX 321036 intron,intron CG3777 +,CG32816 - chrX 323587 intron,intron CG3777 +,CG32816 - chrX_6_320001 chrX_320001 RAL-381 2017 chrX 367052 367068 chrX 367149 367165 5 97 3.0 3.5 3.2 1.2 113 chrX 367052 intron,5` UTR CG32816 -,yar + chrX 367108 intron CG32816 - chrX 367165 intron CG32816 - chrX_5_365001 chrX_365001 RAL-381 2018 chrX 428416 428451 chrX 434601 434636 3S18 7 6185 6.0 1.0 3.5 1.6 6220 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434636 intron CG32816 - chrX_7_430001 chrX_430001 RAL-381 2019 chrX 440994 441025 chrX 441071 441102 15 78 3.5 1.5 2.5 4.3 108 chrX 440994 intron CG32816 - chrX 441048 intron CG32816 - chrX 441102 intron CG32816 - chrX_15_440001 chrX_440001 RAL-381 2020 chrX 450370 450395 chrX 450448 450473 11 78 0.5 4.0 2.2 3.4 103 chrX 450370 intron CG32816 - chrX 450422 intron CG32816 - chrX 450473 intron CG32816 - chrX_11_450001 chrX_450001 RAL-381 2021 chrX 494602 494638 chrX 494691 494730 9 90 4.5 3.0 3.8 1.9 128 chrX 494602 intergenic CG17778 + chrX 494666 5` UTR CG17778 + chrX 494730 intron CG17778 + chrX_9_490001 chrX_490001 RAL-381 2022 chrX 547631 547658 chrX 547875 547902 10 243 5.5 4.5 5.0 1.7 271 chrX 547631 intron Appl + chrX 547766 intron Appl + chrX 547902 intron Appl + chrX_10_545001 chrX_545001 RAL-381 2023 chrX 551420 551453 chrX 558982 559015 412 11 7560 5.5 1.5 3.5 2.4 7595 chrX 551420 intron Appl + chrX 555218 intron Appl + chrX 559015 intron Appl + chrX_11_555001 chrX_555001 RAL-381 2024 chrX 617977 618004 chrX 618057 618083 8 79 2.5 4.0 3.2 1.9 106 chrX 617977 intron CG13366 - chrX 618030 intron CG13366 - chrX 618083 intron CG13366 - chrX_8_615001 chrX_615001 RAL-381 2025 chrX 667649 667679 chrX 667733 667763 9 83 1.5 3.0 2.2 2.8 114 chrX 667649 intergenic not near genes chrX 667706 intergenic not near genes chrX 667763 intergenic not near genes chrX_9_665001 chrX_665001 RAL-381 2026 chrX 670265 670296 chrX 670345 670366 7 78 1.0 3.0 2.0 2.3 101 chrX 670265 intergenic not near genes chrX 670316 intergenic not near genes chrX 670366 intergenic not near genes chrX_7_670001 chrX_670001 RAL-381 2027 chrX 680837 680870 chrX 680920 680952 9 82 6.5 2.5 4.5 1.6 115 chrX 680837 intergenic not near genes chrX 680894 intergenic not near genes chrX 680952 intergenic not near genes chrX_9_680001 chrX_680001 RAL-381 2028 chrX 699537 699565 chrX 699663 699670 9 123 1.0 1.5 1.2 4.1 133 chrX 699537 intron sdk + chrX 699604 intron sdk + chrX 699670 intron sdk + chrX_9_695001 chrX_695001 RAL-381 2029 chrX 706803 706828 chrX 707167 707192 12 363 0.5 5.5 3.0 3.0 389 chrX 706803 intron sdk + chrX 706998 intron sdk + chrX 707192 intron sdk + chrX_12_705001 chrX_705001 RAL-381 2030 chrX 713501 713523 chrX 713980 714002 9 477 2.5 1.0 1.8 3.2 501 chrX 713501 intron sdk + chrX 713752 intron sdk + chrX 714002 intron sdk + chrX_9_710001 chrX_710001 RAL-381 2031 chrX 718333 718358 chrX 718413 718437 6 79 0.5 3.0 1.8 2.1 104 chrX 718333 intron sdk + chrX 718385 intron sdk + chrX 718437 intron sdk + chrX_6_715001 chrX_715001 RAL-381 2032 chrX 778127 778160 chrX 778217 778250 14 88 4.0 2.5 3.2 3.3 123 chrX 778127 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_14_775001 chrX_775001 RAL-381 2033 chrX 780593 780603 chrX 780669 780679 4 76 4.0 0.5 2.2 1.2 86 chrX 780593 intron fz3 + chrX 780636 intron fz3 + chrX 780679 intron fz3 + chrX_4_780001 chrX_780001 RAL-381 2034 chrX 806783 806816 chrX 806878 806908 8 95 3.0 4.0 3.5 1.8 125 chrX 806783 intron Sec22 + chrX 806846 intron Sec22 + chrX 806908 intron Sec22 + chrX_8_805001 chrX_805001 RAL-381 2035 chrX 827600 827624 chrX 835392 835393 roo 9 7789 8.0 0.5 4.2 1.7 7793 chrX 827600 intron CG43867 - chrX 831496 intron CG43867 - chrX 835393 intron CG43867 - chrX_9_830001 chrX_830001 RAL-381 2036 chrX 906701 906734 chrX 908490 908523 S-element 16 1788 3.5 4.5 4.0 3.2 1822 chrX 906701 intron CG43867 - chrX 907612 intron CG43867 - chrX 908523 intron CG43867 - chrX_16_905001 chrX_905001 RAL-381 2037 chrX 1253729 1253762 chrX 1253811 1253843 10 80 2.5 4.0 3.2 2.4 114 chrX 1253729 intron Atf3 - chrX 1253786 intron Atf3 - chrX 1253843 intron Atf3 - chrX_10_1250001 chrX_1250001 RAL-381 2038 chrX 1357781 1357806 chrX 1367951 1367976 Doc 6 10170 4.5 3.0 3.8 1.2 10195 chrX 1357781 intergenic png - chrX 1362878 intergenic not near genes chrX 1367976 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-381 2039 chrX 1428597 1428624 chrX 1428678 1428710 12 84 4.0 2.5 3.2 2.9 113 chrX 1428597 intron futsch + chrX 1428654 intron futsch + chrX 1428710 intron futsch + chrX_12_1425001 chrX_1425001 RAL-381 2040 chrX 1518039 1518069 chrX 1523441 1523471 jockey 9 5400 5.0 6.0 5.5 1.4 5432 chrX 1518039 intergenic inc + chrX 1520755 intergenic not near genes chrX 1523471 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-381 2041 chrX 1560660 1560683 chrX 1560752 1560776 5 90 1.5 2.5 2.0 1.7 116 chrX 1560660 intron Mur2B - chrX 1560718 intron Mur2B - chrX 1560776 intron Mur2B - chrX_5_1560001 chrX_1560001 RAL-381 2042 chrX 1627995 1628000 chrX 1635440 1635467 gtwin 4 7460 3.5 6.0 4.8 0.7 7472 chrX 1627995 intron,intron Mur2B -,br + chrX 1631731 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-381 2043 chrX 1674857 1674878 chrX 1674933 1674950 12 74 4.5 0.0 2.2 3.8 93 chrX 1674857 3` UTR CG32809 - chrX 1674904 3` UTR CG32809 - chrX 1674950 3` UTR CG32809 - chrX_12_1670001 chrX_1670001 RAL-381 2044 chrX 1954889 1954911 chrX 1962829 1962848 Stalker2 4 7936 4.0 3.5 3.8 0.8 7959 chrX 1954889 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962848 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-381 2045 chrX 1987486 1987509 chrX 1987590 1987613 6 104 1.5 3.0 2.2 1.9 127 chrX 1987486 intron Hr4 + chrX 1987550 intron Hr4 + chrX 1987613 intron Hr4 + chrX_6_1985001 chrX_1985001 RAL-381 2046 chrX 2023955 2023986 chrX 2024078 2024109 10 121 10.5 7.0 8.8 1.0 154 chrX 2023955 3` UTR,3` UTR east +,Actn - chrX 2024032 3` UTR,3` UTR east +,Actn - chrX 2024109 3` UTR,3` UTR east +,Actn - chrX_10_2020001 chrX_2020001 RAL-381 2047 chrX 2020867 2020891 chrX 2025586 2025614 5 4729 25.5 17.0 21.2 0.2 4747 chrX 2020867 exon east + chrX 2023240 3` UTR east + chrX 2025614 exon Actn - chrX_5_2020001 chrX_2020001 RAL-381 2048 chrX 2095941 2095950 chrX 2096014 2096023 6 75 6.5 0.5 3.5 1.3 82 chrX 2095941 intron csw + chrX 2095982 intron csw + chrX 2096023 intron csw + chrX_6_2095001 chrX_2095001 RAL-381 2049 chrX 2146653 2146683 chrX 2146743 2146771 6 89 2.0 5.5 3.8 1.2 118 chrX 2146653 intron Pgd + chrX 2146712 intron Pgd + chrX 2146771 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-381 2050 chrX 2254464 2254486 chrX 2254540 2254543 8 70 6.0 2.5 4.2 1.5 79 chrX 2254464 3` UTR CG3078 - chrX 2254504 3` UTR CG3078 - chrX 2254543 3` UTR CG3078 - chrX_8_2250001 chrX_2250001 RAL-381 2051 chrX 2397922 2397936 chrX 2398009 2398020 4 90 4.0 0.0 2.0 1.3 98 chrX 2397922 intergenic not near genes chrX 2397971 intergenic not near genes chrX 2398020 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-381 2052 chrX 2399835 2399858 chrX 2408188 2408211 roo 6 8353 5.0 1.0 3.0 1.5 8376 chrX 2399835 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408211 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-381 2053 chrX 2452687 2452705 chrX 2453024 2453042 4 338 14.0 31.5 22.8 0.2 355 chrX 2452687 intron boi - chrX 2452864 intron boi - chrX 2453042 intron boi - chrX_4_2450001 chrX_2450001 RAL-381 2054 chrX 2561538 2561555 chrX 2561680 2561699 6 148 1.5 3.0 2.2 1.9 161 chrX 2561538 intron Pdfr + chrX 2561618 intron Pdfr + chrX 2561699 intron Pdfr + chrX_6_2560001 chrX_2560001 RAL-381 2055 chrX 2578813 2578843 chrX 2578903 2578920 14 88 2.0 3.5 2.8 3.7 107 chrX 2578813 intergenic Pdfr +,Vha36-3 - chrX 2578866 intergenic Vha36-3 -,Pdfr + chrX 2578920 intergenic Vha36-3 -,Pdfr + chrX_14_2575001 chrX_2575001 RAL-381 2056 chrX 2844899 2844932 chrX 2852309 2852342 mdg1 7 7410 0.5 3.0 1.8 2.5 7443 chrX 2844899 intron kirre + chrX 2848620 intron kirre + chrX 2852342 intron kirre + chrX_7_2845001 chrX_2845001 RAL-381 2057 chrX 3027858 3027880 chrX 3028016 3028038 8 155 4.0 3.5 3.8 1.7 180 chrX 3027858 intron kirre + chrX 3027948 intron kirre + chrX 3028038 intron kirre + chrX_8_3025001 chrX_3025001 RAL-381 2058 chrX 3306346 3306361 chrX 3306428 3306443 5 82 3.0 0.0 1.5 2.0 97 chrX 3306346 intron dnc + chrX 3306394 intron dnc + chrX 3306443 intron dnc + chrX_5_3305001 chrX_3305001 RAL-381 2059 chrX 3398144 3398155 chrX 3398225 3398236 4 81 4.0 6.5 5.2 0.6 92 chrX 3398144 intron,intron CR44999 +,CG12535 - chrX 3398190 intron,intron CR44999 +,CG12535 - chrX 3398236 intron,intron CR44999 +,CG12535 - chrX_4_3395001 chrX_3395001 RAL-381 2060 chrX 3414358 3414373 chrX 3414485 3414498 5 126 1.0 2.5 1.8 1.8 140 chrX 3414358 intron,intron CR44999 +,CG12535 - chrX 3414428 intron,intron CR44999 +,CG12535 - chrX 3414498 intron,intron CR44999 +,CG12535 - chrX_5_3410001 chrX_3410001 RAL-381 2061 chrX 3415015 3415043 chrX 3421200 3421228 3S18 10 6184 1.0 1.5 1.2 4.5 6213 chrX 3415015 intron,intron CR44999 +,CG12535 - chrX 3418122 intron,intron CR44999 +,CG12535 - chrX 3421228 intron,intron CR44999 +,CG12535 - chrX_10_3415001 chrX_3415001 RAL-381 2062 chrX 3493089 3493124 chrX 3502248 3502283 roo 10 9158 3.5 2.5 3.0 2.5 9194 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502283 intron,intron CR44999 +,Gas8 - chrX_10_3495001 chrX_3495001 RAL-381 2063 chrX 3597548 3597583 chrX 3619716 3619751 roo 19 22168 4.0 2.5 3.2 4.5 22203 chrX 3597548 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_19_3605001 chrX_3605001 RAL-381 2064 chrX 3620468 3620493 chrX 3620567 3620592 6 97 1.0 3.5 2.2 1.9 124 chrX 3620468 intron AstA-R1 + chrX 3620530 intron AstA-R1 + chrX 3620592 intron AstA-R1 + chrX_6_3620001 chrX_3620001 RAL-381 2065 chrX 3630545 3630574 chrX 3630621 3630643 10 72 3.0 2.5 2.8 2.6 98 chrX 3630545 intron AstA-R1 + chrX 3630594 intron AstA-R1 + chrX 3630643 intron AstA-R1 + chrX_10_3630001 chrX_3630001 RAL-381 2066 chrX 3657412 3657445 chrX 3657492 3657525 20 77 5.0 7.5 6.2 2.8 113 chrX 3657412 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657525 intron AstA-R1 + chrX_20_3655001 chrX_3655001 RAL-381 2067 chrX 3713124 3713134 chrX 3713233 3713243 4 109 2.5 4.0 3.2 1.0 119 chrX 3713124 intron Rala - chrX 3713184 intron Rala - chrX 3713243 intron Rala - chrX_4_3710001 chrX_3710001 RAL-381 2068 chrX 3726761 3726790 chrX 3730158 3730183 NOF 6 3396 3.5 7.0 5.2 1.0 3422 chrX 3726761 intron tlk + chrX 3728472 intron tlk + chrX 3730183 intron tlk + chrX_6_3725001 chrX_3725001 RAL-381 2069 chrX 3866104 3866124 chrX 3866182 3866190 7 76 2.5 1.0 1.8 2.5 86 chrX 3866104 intron yin - chrX 3866147 intron yin - chrX 3866190 intron yin - chrX_7_3865001 chrX_3865001 RAL-381 2070 chrX 3881273 3881302 chrX 3881412 3881441 8 139 4.0 2.5 3.2 1.9 168 chrX 3881273 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-381 2071 chrX 3986861 3986887 chrX 3994494 3994520 412 7 7633 4.5 4.0 4.2 1.3 7659 chrX 3986861 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994520 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-381 2072 chrX 4067987 4067988 chrX 10754861 10754863 6 6686874 13.5 24.5 19.0 0.3 6686876 chrX 4067987 intergenic not near genes chrX 7411425 3` UTR CG42246 - chrX 10754863 intron Rph - chrX_6_7410001 chrX_7410001 RAL-381 2073 chrX 4101886 4101899 chrX 4101966 4101979 6 80 2.5 11.0 6.8 0.8 93 chrX 4101886 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101979 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-381 2074 chrX 4157896 4157920 chrX 4164949 4164973 297 5 7049 5.5 1.5 3.5 1.1 7077 chrX 4157896 intron Fas2 - chrX 4161434 intron Fas2 - chrX 4164973 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-381 2075 chrX 4165469 4165501 chrX 4165565 4165594 16 94 3.0 2.0 2.5 4.6 125 chrX 4165469 intron Fas2 - chrX 4165532 intron Fas2 - chrX 4165594 intron Fas2 - chrX_16_4165001 chrX_4165001 RAL-381 2076 chrX 4324394 4324414 chrX 4324471 4324491 7 77 1.0 2.5 1.8 2.5 97 chrX 4324394 intron norpA + chrX 4324442 intron norpA + chrX 4324491 intron norpA + chrX_7_4320001 chrX_4320001 RAL-381 2077 chrX 4515834 4515859 chrX 4515912 4515937 8 78 2.5 5.0 3.8 1.7 103 chrX 4515834 intron CR32773 - chrX 4515886 intron CR32773 - chrX 4515937 intron CR32773 - chrX_8_4515001 chrX_4515001 RAL-381 2078 chrX 4638641 4638665 chrX 4638778 4638802 6 136 3.0 2.5 2.8 1.6 161 chrX 4638641 exon pon + chrX 4638722 3` UTR pon + chrX 4638802 3` UTR pon + chrX_6_4635001 chrX_4635001 RAL-381 2079 chrX 4693763 4693782 chrX 4693858 4693865 10 94 0.0 4.0 2.0 3.3 102 chrX 4693763 intron ctp + chrX 4693814 intron ctp + chrX 4693865 intron ctp + chrX_10_4690001 chrX_4690001 RAL-381 2080 chrX 4731814 4731833 chrX 4736907 4736922 jockey 10 5092 8.0 2.0 5.0 1.7 5108 chrX 4731814 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736922 intergenic not near genes chrX_10_4730001 chrX_4730001 RAL-381 2081 chrX 4763255 4763280 chrX 4763742 4763768 Stalker4 7 487 3.5 4.0 3.8 1.5 513 chrX 4763255 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763768 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-381 2082 chrX 4792381 4792398 chrX 4792813 4792831 jockey 4 433 6.0 8.5 7.2 0.5 450 chrX 4792381 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792831 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-381 2083 chrX 4792399 4792407 chrX 4792811 4792839 jockey 4 428 3.5 8.0 5.8 0.6 440 chrX 4792399 intergenic not near genes chrX 4792619 intergenic not near genes chrX 4792839 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-381 2084 chrX 4885779 4885786 chrX 4885872 4885879 4 93 5.0 3.5 4.2 0.8 100 chrX 4885779 intron CG42594 + chrX 4885829 intron CG42594 + chrX 4885879 intron CG42594 + chrX_4_4885001 chrX_4885001 RAL-381 2085 chrX 4885788 4885807 chrX 4885866 4885900 10 82 2.0 2.0 2.0 3.3 112 chrX 4885788 intron CG42594 + chrX 4885844 intron CG42594 + chrX 4885900 intron CG42594 + chrX_10_4885001 chrX_4885001 RAL-381 2086 chrX 5206300 5206330 chrX 5206573 5206603 11 273 3.0 3.0 3.0 2.8 303 chrX 5206300 intron,intron CG15465 +,rg + chrX 5206452 intron,intron CG15465 +,rg + chrX 5206603 intron,intron CG15465 +,rg + chrX_11_5205001 chrX_5205001 RAL-381 2087 chrX 5220390 5220414 chrX 5220631 5220652 9 241 0.0 2.0 1.0 4.5 262 chrX 5220390 intron,intron CG15465 +,rg + chrX 5220521 intron,intron CG15465 +,rg + chrX 5220652 intron,intron CG15465 +,rg + chrX_9_5220001 chrX_5220001 RAL-381 2088 chrX 5264046 5264077 chrX 5264136 5264167 7 90 1.5 2.0 1.8 2.5 121 chrX 5264046 intergenic not near genes chrX 5264106 intergenic not near genes chrX 5264167 intergenic not near genes chrX_7_5260001 chrX_5260001 RAL-381 2089 chrX 5338716 5338731 chrX 5339969 5339983 jockey 5 1253 3.5 4.0 3.8 1.0 1267 chrX 5338716 intergenic not near genes chrX 5339350 intergenic not near genes chrX 5339983 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-381 2090 chrX 5345397 5345424 chrX 5345507 5345535 8 111 4.5 1.5 3.0 2.0 138 chrX 5345397 intron SK + chrX 5345466 intron SK + chrX 5345535 intron SK + chrX_8_5345001 chrX_5345001 RAL-381 2091 chrX 5473586 5473620 chrX 5473662 5473696 10 74 1.5 2.5 2.0 3.3 110 chrX 5473586 intron SPR + chrX 5473641 intron SPR + chrX 5473696 intron SPR + chrX_10_5470001 chrX_5470001 RAL-381 2092 chrX 5555382 5555394 chrX 5555495 5555505 8 119 2.5 3.5 3.0 2.0 123 chrX 5555382 intron Vsx2 - chrX 5555444 intron Vsx2 - chrX 5555505 intron Vsx2 - chrX_8_5555001 chrX_5555001 RAL-381 2093 chrX 5725031 5725055 chrX 5725134 5725158 7 100 2.5 2.5 2.5 2.0 127 chrX 5725031 intron CG32758 - chrX 5725094 intron CG32758 - chrX 5725158 intron CG32758 - chrX_7_5725001 chrX_5725001 RAL-381 2094 chrX 5786588 5786605 chrX 5786671 5786688 6 83 2.5 4.5 3.5 1.3 100 chrX 5786588 intron CG42699 + chrX 5786638 intron CG42699 + chrX 5786688 intron CG42699 + chrX_6_5785001 chrX_5785001 RAL-381 2095 chrX 5830603 5830622 chrX 5830678 5830704 6 80 1.0 0.0 0.5 4.0 101 chrX 5830603 intron CG15765 + chrX 5830654 intron CG15765 + chrX 5830704 intron CG15765 + chrX_6_5830001 chrX_5830001 RAL-381 2096 chrX 5883815 5883838 chrX 5884054 5884079 pogo 6 241 1.5 2.5 2.0 2.0 264 chrX 5883815 intron CR45668 - chrX 5883947 intron CR45668 - chrX 5884079 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-381 2097 chrX 5884163 5884190 chrX 5884404 5884431 pogo 4 241 3.5 4.5 4.0 0.8 268 chrX 5884163 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884431 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-381 2098 chrX 6115891 6115924 chrX 6116028 6116061 10 137 1.5 0.0 0.8 5.6 170 chrX 6115891 intron Ca-alpha1T - chrX 6115976 intron Ca-alpha1T - chrX 6116061 intron Ca-alpha1T - chrX_10_6115001 chrX_6115001 RAL-381 2099 chrX 6171596 6171617 chrX 6179014 6179050 Quasimodo 6 7430 3.0 2.5 2.8 1.6 7454 chrX 6171596 intron Ca-alpha1T - chrX 6175323 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-381 2100 chrX 6198363 6198399 chrX 6202239 6202250 7 3855 0.0 13.5 6.8 0.9 3887 chrX 6198363 exon CG32751 - chrX 6200306 3` UTR vanin-like - chrX 6202250 exon vanin-like - chrX_7_6200001 chrX_6200001 RAL-381 2101 chrX 6215353 6215372 chrX 6215436 6215455 9 82 2.5 5.0 3.8 1.9 102 chrX 6215353 intergenic not near genes chrX 6215404 intergenic not near genes chrX 6215455 intergenic not near genes chrX_9_6215001 chrX_6215001 RAL-381 2102 chrX 6335215 6335235 chrX 6337722 6337745 Tirant 6 2508 0.0 5.5 2.8 1.6 2530 chrX 6335215 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337745 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-381 2103 chrX 6392868 6392902 chrX 6397633 6397662 Doc 11 4763 2.0 1.0 1.5 4.4 4794 chrX 6392868 intergenic not near genes chrX 6395265 intergenic not near genes chrX 6397662 intergenic not near genes chrX_11_6395001 chrX_6395001 RAL-381 2104 chrX 6562829 6562851 chrX 6571311 6571333 Tirant 7 8478 3.5 7.5 5.5 1.1 8504 chrX 6562829 intron CG34417 + chrX 6567081 intron CG34417 + chrX 6571333 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-381 2105 chrX 6605477 6605502 chrX 6608499 6608524 Burdock 6 3022 2.5 3.5 3.0 1.5 3047 chrX 6605477 intron pigs + chrX 6607000 intron pigs + chrX 6608524 intron pigs + chrX_6_6605001 chrX_6605001 RAL-381 2106 chrX 6795007 6795028 chrX 6795093 6795094 5 82 4.0 4.5 4.2 1.0 87 chrX 6795007 intron C3G - chrX 6795050 intron C3G - chrX 6795094 intron C3G - chrX_5_6795001 chrX_6795001 RAL-381 2107 chrX 6897578 6897584 chrX 6897655 6897662 4 78 2.5 2.0 2.2 1.2 84 chrX 6897578 intergenic not near genes chrX 6897620 intergenic not near genes chrX 6897662 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-381 2108 chrX 6897590 6897706 chrX 6897668 6897816 6 101 2.0 2.0 2.0 2.0 226 chrX 6897590 intergenic not near genes chrX 6897703 intergenic not near genes chrX 6897816 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-381 2109 chrX 6922841 6922862 chrX 6923032 6923053 7 191 1.0 4.5 2.8 1.8 212 chrX 6922841 intron CG14431 + chrX 6922947 intron CG14431 + chrX 6923053 intron CG14431 + chrX_7_6920001 chrX_6920001 RAL-381 2110 chrX 6976489 6976510 chrX 6976585 6976606 11 96 6.5 2.5 4.5 2.0 117 chrX 6976489 intron ogre - chrX 6976548 intron ogre - chrX 6976606 intron ogre - chrX_11_6975001 chrX_6975001 RAL-381 2111 chrX 6989508 6989534 chrX 6989595 6989621 7 87 1.5 5.0 3.2 1.7 113 chrX 6989508 intron ogre - chrX 6989564 intron ogre - chrX 6989621 intron ogre - chrX_7_6985001 chrX_6985001 RAL-381 2112 chrX 7023599 7023629 chrX 7030989 7031019 Tabor 14 7390 8.5 1.5 5.0 2.3 7420 chrX 7023599 intron CG12541 - chrX 7027309 intron CG12541 - chrX 7031019 intron CG12541 - chrX_14_7025001 chrX_7025001 RAL-381 2113 chrX 7061374 7061398 chrX 7061468 7061492 6 94 1.5 3.5 2.5 1.7 118 chrX 7061374 intron CG12541 - chrX 7061433 intron CG12541 - chrX 7061492 intron CG12541 - chrX_6_7060001 chrX_7060001 RAL-381 2114 chrX 7125247 7125264 chrX 7134406 7134423 roo 6 9159 3.0 0.0 1.5 2.4 9176 chrX 7125247 intergenic not near genes chrX 7129835 intergenic not near genes chrX 7134423 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-381 2115 chrX 7570639 7570667 chrX 7570770 7570801 11 133 1.5 2.0 1.8 3.9 162 chrX 7570639 intergenic not near genes chrX 7570720 intergenic not near genes chrX 7570801 intergenic not near genes chrX_11_7570001 chrX_7570001 RAL-381 2116 chrX 7702512 7702526 chrX 7702604 7702618 6 90 1.0 5.0 3.0 1.5 106 chrX 7702512 intron CHES-1-like - chrX 7702565 intron CHES-1-like - chrX 7702618 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-381 2117 chrX 7702908 7702939 chrX 7703344 7703358 jockey 5 431 2.5 4.5 3.5 1.1 450 chrX 7702908 intron CHES-1-like - chrX 7703133 intron CHES-1-like - chrX 7703358 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-381 2118 chrX 7720567 7720577 chrX 7720644 7720657 4 78 3.0 1.0 2.0 1.3 90 chrX 7720567 intergenic not near genes chrX 7720612 intergenic not near genes chrX 7720657 intergenic not near genes chrX_4_7720001 chrX_7720001 RAL-381 2119 chrX 7737136 7737145 chrX 7737248 7737255 4 112 2.0 1.0 1.5 1.6 119 chrX 7737136 5` UTR Tom40 + chrX 7737196 intron Tom40 + chrX 7737255 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-381 2120 chrX 7784236 7784242 chrX 7784538 7784542 jockey 4 302 3.0 9.0 6.0 0.6 306 chrX 7784236 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784542 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-381 2121 chrX 7832434 7832458 chrX 7832523 7832547 6 89 2.0 4.0 3.0 1.5 113 chrX 7832434 intron CG1402 + chrX 7832490 intron CG1402 + chrX 7832547 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-381 2122 chrX 7845724 7845759 chrX 7847215 7847250 hopper2 8 1490 8.0 4.5 6.2 1.1 1526 chrX 7845724 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847250 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-381 2123 chrX 8085573 8085602 chrX 8085659 8085688 6 86 5.5 4.0 4.8 1.0 115 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085688 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-381 2124 chrX 8305192 8305222 chrX 8305273 8305302 12 80 6.0 6.0 6.0 1.7 110 chrX 8305192 intron nAChRalpha3 - chrX 8305247 intron nAChRalpha3 - chrX 8305302 intron nAChRalpha3 - chrX_12_8305001 chrX_8305001 RAL-381 2125 chrX 8421462 8421494 chrX 8421551 8421586 9 91 0.5 3.5 2.0 3.0 124 chrX 8421462 intron Trf2 + chrX 8421524 intron Trf2 + chrX 8421586 intron Trf2 + chrX_9_8420001 chrX_8420001 RAL-381 2126 chrX 8605313 8605347 chrX 8605388 8605424 7 75 3.5 1.0 2.2 2.2 111 chrX 8605313 exon Caf1-180 - chrX 8605368 exon Caf1-180 - chrX 8605424 exon Caf1-180 - chrX_7_8605001 chrX_8605001 RAL-381 2127 chrX 8877779 8877807 chrX 8877903 8877931 7 124 2.0 0.0 1.0 3.5 152 chrX 8877779 intron Moe - chrX 8877855 intron Moe - chrX 8877931 intron Moe - chrX_7_8875001 chrX_8875001 RAL-381 2128 chrX 8922340 8922354 chrX 8922759 8922768 jockey 5 421 7.5 4.0 5.8 0.7 428 chrX 8922340 intron rdgA + chrX 8922554 intron rdgA + chrX 8922768 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-381 2129 chrX 8927595 8927611 chrX 8929865 8929881 NOF 4 2269 1.5 3.0 2.2 1.2 2286 chrX 8927595 intron rdgA + chrX 8928738 intron rdgA + chrX 8929881 intron rdgA + chrX_4_8925001 chrX_8925001 RAL-381 2130 chrX 8943351 8943364 chrX 8943473 8943481 4 120 2.0 6.5 4.2 0.8 130 chrX 8943351 intron rdgA + chrX 8943416 intron rdgA + chrX 8943481 intron rdgA + chrX_4_8940001 chrX_8940001 RAL-381 2131 chrX 8948765 8948791 chrX 8956275 8956301 roo 7 7510 0.5 2.0 1.2 3.2 7536 chrX 8948765 intron rdgA + chrX 8952533 intron rdgA + chrX 8956301 intron rdgA + chrX_7_8950001 chrX_8950001 RAL-381 2132 chrX 8971883 8971914 chrX 8971962 8971993 7 79 1.0 2.5 1.8 2.5 110 chrX 8971883 intron rdgA + chrX 8971938 intron rdgA + chrX 8971993 intron rdgA + chrX_7_8970001 chrX_8970001 RAL-381 2133 chrX 9034855 9034874 chrX 9035051 9035070 7 196 20.5 29.5 25.0 0.3 215 chrX 9034855 intron,intron CR43836 -,CG42388 + chrX 9034962 intron,intron CR43836 -,CG42388 + chrX 9035070 intron,intron CR43836 -,CG42388 + chrX_7_9030001 chrX_9030001 RAL-381 2134 chrX 9337940 9337972 chrX 9338032 9338064 6 92 2.5 3.5 3.0 1.5 124 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338064 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-381 2135 chrX 9391571 9391600 chrX 9391717 9391746 5 146 1.5 1.0 1.2 2.3 175 chrX 9391571 intron mgl - chrX 9391658 intron mgl - chrX 9391746 intron mgl - chrX_5_9390001 chrX_9390001 RAL-381 2136 chrX 9508140 9508161 chrX 9509656 9509679 jockey 8 1518 1.5 1.5 1.5 3.2 1539 chrX 9508140 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509679 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-381 2137 chrX 9575792 9575822 chrX 9576113 9576139 mdg3 17 320 3.5 5.0 4.2 3.3 347 chrX 9575792 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576139 intron,5` UTR CG32699 -,CG42395 - chrX_17_9575001 chrX_9575001 RAL-381 2138 chrX 9752369 9752389 chrX 9752446 9752466 5 77 3.5 3.5 3.5 1.1 97 chrX 9752369 intron Sp1 + chrX 9752418 intron Sp1 + chrX 9752466 intron Sp1 + chrX_5_9750001 chrX_9750001 RAL-381 2139 chrX 9758064 9758082 chrX 9758149 9758167 4 85 1.0 0.0 0.5 2.7 103 chrX 9758064 intergenic not near genes chrX 9758116 intergenic not near genes chrX 9758167 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-381 2140 chrX 9839367 9839376 chrX 9839449 9839458 8 81 0.0 6.5 3.2 1.9 91 chrX 9839367 intron CG32698 + chrX 9839412 intron CG32698 + chrX 9839458 intron CG32698 + chrX_8_9835001 chrX_9835001 RAL-381 2141 chrX 10138215 10138248 chrX 10145719 10145751 412 8 7504 3.0 2.5 2.8 2.1 7536 chrX 10138215 intron,intron RhoU +,CR44894 - chrX 10141983 intron,intron RhoU +,CR44894 - chrX 10145751 intron,intron RhoU +,CR44894 - chrX_8_10140001 chrX_10140001 RAL-381 2142 chrX 10151928 10151935 chrX 10152004 10152012 4 77 4.5 5.0 4.8 0.7 84 chrX 10151928 intron CR44894 - chrX 10151970 intron CR44894 - chrX 10152012 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-381 2143 chrX 10285897 10285907 chrX 10286233 10286243 4 336 3.0 2.0 2.5 1.1 346 chrX 10285897 intron alpha-Man-I - chrX 10286070 intron alpha-Man-I - chrX 10286243 intron alpha-Man-I - chrX_4_10285001 chrX_10285001 RAL-381 2144 chrX 10330669 10330674 chrX 10330856 10330859 5 195 12.0 8.0 10.0 0.5 190 chrX 10330669 exon CG15306 - chrX 10330764 exon CG15306 - chrX 10330859 exon CG15306 - chrX_5_10330001 chrX_10330001 RAL-381 2145 chrX 10343468 10343497 chrX 10343660 10343689 11 192 1.5 3.0 2.2 3.4 221 chrX 10343468 intron CG43740 + chrX 10343578 intron CG43740 + chrX 10343689 intron CG43740 + chrX_11_10340001 chrX_10340001 RAL-381 2146 chrX 10348814 10348823 chrX 10356379 10356386 springer 4 7564 0.5 1.0 0.8 2.2 7572 chrX 10348814 intergenic snoRNA:U3:9B + chrX 10352600 intergenic not near genes chrX 10356386 intergenic l(1)G0289 - chrX_4_10350001 chrX_10350001 RAL-381 2147 chrX 10401397 10401423 chrX 10401478 10401504 6 81 1.0 2.5 1.8 2.1 107 chrX 10401397 intron flw + chrX 10401450 intron flw + chrX 10401504 intron flw + chrX_6_10400001 chrX_10400001 RAL-381 2148 chrX 10550333 10550357 chrX 10550411 10550435 8 78 2.0 2.5 2.2 2.5 102 chrX 10550333 intron spri - chrX 10550384 intron spri - chrX 10550435 intron spri - chrX_8_10550001 chrX_10550001 RAL-381 2149 chrX 10550852 10550880 chrX 10552319 10552347 hobo 6 1466 4.0 2.5 3.2 1.4 1495 chrX 10550852 intron spri - chrX 10551600 intron spri - chrX 10552347 intron spri - chrX_6_10550001 chrX_10550001 RAL-381 2150 chrX 10666445 10666484 chrX 10666612 10666651 6 167 2.0 1.5 1.8 2.1 206 chrX 10666445 intron X11Lbeta + chrX 10666548 intron X11Lbeta + chrX 10666651 intron X11Lbeta + chrX_6_10665001 chrX_10665001 RAL-381 2151 chrX 10686048 10686078 chrX 10691185 10691215 roo 8 5134 3.0 1.5 2.2 2.5 5167 chrX 10686048 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_8_10685001 chrX_10685001 RAL-381 2152 chrX 10772676 10772698 chrX 10772758 10772781 Tirant 9 81 2.0 1.0 1.5 3.6 105 chrX 10772676 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772781 intron CG15211 + chrX_9_10770001 chrX_10770001 RAL-381 2153 chrX 10803036 10803047 chrX 10803121 10803132 6 85 9.0 4.5 6.8 0.8 96 chrX 10803036 intron Imp - chrX 10803084 intron Imp - chrX 10803132 intron Imp - chrX_6_10800001 chrX_10800001 RAL-381 2154 chrX 11132290 11132308 chrX 11132414 11132447 4 135 4.0 5.5 4.8 0.7 157 chrX 11132290 intron,exon Klp10A -,CG44385 - chrX 11132368 intron,5` UTR Klp10A -,CG44385 - chrX 11132447 intron Klp10A - chrX_4_11130001 chrX_11130001 RAL-381 2155 chrX 11194452 11194459 chrX 11201868 11201880 gypsy5 5 7420 3.5 10.0 6.8 0.6 7428 chrX 11194452 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201880 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-381 2156 chrX 11205297 11205317 chrX 11205372 11205393 10 76 2.0 1.5 1.8 3.6 96 chrX 11205297 intergenic not near genes chrX 11205345 intergenic not near genes chrX 11205393 intergenic not near genes chrX_10_11205001 chrX_11205001 RAL-381 2157 chrX 11254170 11254200 chrX 11254281 11254311 10 111 4.0 1.5 2.8 2.6 141 chrX 11254170 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254311 intron CG44422 - chrX_10_11250001 chrX_11250001 RAL-381 2158 chrX 11268567 11268589 chrX 11270054 11270082 hopper2 16 1490 3.5 4.0 3.8 3.3 1515 chrX 11268567 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270082 intron CG44422 - chrX_16_11265001 chrX_11265001 RAL-381 2159 chrX 11274939 11274959 chrX 11275082 11275100 5 143 4.0 3.0 3.5 1.1 161 chrX 11274939 intron CG44422 - chrX 11275020 intron CG44422 - chrX 11275100 intron CG44422 - chrX_5_11275001 chrX_11275001 RAL-381 2160 chrX 11291695 11291723 chrX 11291777 11291805 7 80 2.5 2.5 2.5 2.0 110 chrX 11291695 intron CG44422 - chrX 11291750 intron CG44422 - chrX 11291805 intron CG44422 - chrX_7_11290001 chrX_11290001 RAL-381 2161 chrX 11312056 11312093 chrX 11319409 11319430 Stalker2 8 7348 2.5 1.5 2.0 2.7 7374 chrX 11312056 intergenic not near genes chrX 11315743 intergenic not near genes chrX 11319430 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-381 2162 chrX 11633416 11633434 chrX 11640470 11640488 297 5 7054 2.5 3.5 3.0 1.2 7072 chrX 11633416 intron Ptp10D + chrX 11636952 intron Ptp10D + chrX 11640488 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-381 2163 chrX 11719873 11719903 chrX 11719953 11719983 4 80 0.5 2.0 1.2 1.8 110 chrX 11719873 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11719983 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-381 2164 chrX 11905070 11905086 chrX 11905204 11905224 6 138 6.0 6.0 6.0 0.9 154 chrX 11905070 5` UTR Upf1 - chrX 11905147 5` UTR Upf1 - chrX 11905224 5` UTR Upf1 - chrX_6_11905001 chrX_11905001 RAL-381 2165 chrX 12094033 12094063 chrX 12094125 12094155 4 92 2.0 2.5 2.2 1.2 122 chrX 12094033 intron,intron CR43960 +,Ten-a + chrX 12094094 intron,intron CR43960 +,Ten-a + chrX 12094155 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-381 2166 chrX 12109696 12109725 chrX 12109785 12109813 4 86 3.0 4.5 3.8 0.8 117 chrX 12109696 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX 12109754 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX 12109813 intron,intron,exon CR43960 +,Ten-a +,CG2750 + chrX_4_12105001 chrX_12105001 RAL-381 2167 chrX 12168136 12168160 chrX 12173578 12173586 I-element 6 5438 3.5 5.5 4.5 1.1 5450 chrX 12168136 intron Ten-a + chrX 12170861 intron Ten-a + chrX 12173586 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-381 2168 chrX 12301957 12301991 chrX 12303263 12303290 X-element 10 1304 2.5 4.0 3.2 2.4 1333 chrX 12301957 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303290 intron Ten-a + chrX_10_12300001 chrX_12300001 RAL-381 2169 chrX 12442083 12442107 chrX 12442165 12442189 4 82 0.5 0.0 0.2 3.3 106 chrX 12442083 intron Pkcdelta + chrX 12442136 intron Pkcdelta + chrX 12442189 intron Pkcdelta + chrX_4_12440001 chrX_12440001 RAL-381 2170 chrX 12533813 12533824 chrX 12533889 12533900 4 76 0.0 2.5 1.2 1.8 87 chrX 12533813 intron CG43921 - chrX 12533856 intron CG43921 - chrX 12533900 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-381 2171 chrX 12912641 12912660 chrX 12912738 12912757 4 97 0.0 0.0 0.0 4.0 116 chrX 12912641 5` UTR CR45625 + chrX 12912699 5` UTR CR45625 + chrX 12912757 5` UTR CR45625 + chrX_4_12910001 chrX_12910001 RAL-381 2172 chrX 12953892 12953921 chrX 12954030 12954057 5 138 0.5 1.0 0.8 2.8 165 chrX 12953892 intron hec - chrX 12953974 intron hec - chrX 12954057 intron hec - chrX_5_12950001 chrX_12950001 RAL-381 2173 chrX 13061354 13061369 chrX 13061464 13061480 6 111 4.0 3.5 3.8 1.2 126 chrX 13061354 intron rad + chrX 13061417 intron rad + chrX 13061480 intron rad + chrX_6_13060001 chrX_13060001 RAL-381 2174 chrX 13106259 13106275 chrX 13106344 13106360 9 84 3.0 5.0 4.0 1.8 101 chrX 13106259 intron CG43313 - chrX 13106310 intron CG43313 - chrX 13106360 intron CG43313 - chrX_9_13105001 chrX_13105001 RAL-381 2175 chrX 13146598 13146628 chrX 13146686 13146716 6 88 0.5 3.0 1.8 2.1 118 chrX 13146598 intron CG32645 + chrX 13146657 intron CG32645 + chrX 13146716 intron CG32645 + chrX_6_13145001 chrX_13145001 RAL-381 2176 chrX 13172348 13172383 chrX 13172424 13172459 16 76 5.5 5.0 5.2 2.6 111 chrX 13172348 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172459 intron CG34411 - chrX_16_13170001 chrX_13170001 RAL-381 2177 chrX 13236884 13236901 chrX 13236964 13236986 7 84 0.0 1.5 0.8 3.9 102 chrX 13236884 intron mew - chrX 13236935 intron mew - chrX 13236986 intron mew - chrX_7_13235001 chrX_13235001 RAL-381 2178 chrX 13429463 13429493 chrX 13430612 13430642 jockey 12 1147 2.5 3.0 2.8 3.2 1179 chrX 13429463 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430642 intergenic not near genes chrX_12_13430001 chrX_13430001 RAL-381 2179 chrX 13442143 13442170 chrX 13442234 13442261 6 91 2.5 3.5 3.0 1.5 118 chrX 13442143 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442261 intergenic not near genes chrX_6_13440001 chrX_13440001 RAL-381 2180 chrX 13463648 13463667 chrX 13469225 13469244 mdg3 4 5577 2.0 2.0 2.0 1.3 5596 chrX 13463648 intron Neto + chrX 13466446 intron Neto + chrX 13469244 intron Neto + chrX_4_13465001 chrX_13465001 RAL-381 2181 chrX 13501477 13501479 chrX 13501540 13501560 4 74 4.0 5.0 4.5 0.7 83 chrX 13501477 intron Neto + chrX 13501518 intron Neto + chrX 13501560 intron Neto + chrX_4_13500001 chrX_13500001 RAL-381 2182 chrX 13937979 13938000 chrX 13941250 13941264 I-element 5 3270 2.5 1.5 2.0 1.7 3285 chrX 13937979 intron mamo - chrX 13939622 intron mamo - chrX 13941264 intron mamo - chrX_5_13935001 chrX_13935001 RAL-381 2183 chrX 13943276 13943296 chrX 13943360 13943377 5 83 0.0 2.0 1.0 2.5 101 chrX 13943276 intron mamo - chrX 13943326 intron mamo - chrX 13943377 intron mamo - chrX_5_13940001 chrX_13940001 RAL-381 2184 chrX 13975874 13975908 chrX 13975951 13975985 11 77 0.0 1.5 0.8 6.1 111 chrX 13975874 intron mamo - chrX 13975930 intron mamo - chrX 13975985 intron mamo - chrX_11_13975001 chrX_13975001 RAL-381 2185 chrX 14027079 14027109 chrX 14027165 14027195 8 85 1.5 1.0 1.2 3.6 116 chrX 14027079 intergenic not near genes chrX 14027137 intergenic not near genes chrX 14027195 intergenic not near genes chrX_8_14025001 chrX_14025001 RAL-381 2186 chrX 14105031 14105055 chrX 14114172 14114204 roo 15 9150 7.5 4.5 6.0 2.1 9173 chrX 14105031 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_15_14105001 chrX_14105001 RAL-381 2187 chrX 14157595 14157619 chrX 14163252 14163276 297 5 5657 2.0 1.5 1.8 1.8 5681 chrX 14157595 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163276 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-381 2188 chrX 14209463 14209486 chrX 14209554 14209569 5 89 3.0 2.5 2.8 1.3 106 chrX 14209463 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209516 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209569 intron,intron l(1)G0007 +,l(1)G0469 - chrX_5_14205001 chrX_14205001 RAL-381 2189 chrX 14291478 14291491 chrX 14292010 14292023 4 532 3.5 7.5 5.5 0.6 545 chrX 14291478 intergenic not near genes chrX 14291750 intergenic not near genes chrX 14292023 intergenic not near genes chrX_4_14290001 chrX_14290001 RAL-381 2190 chrX 14296470 14296488 chrX 14296544 14296564 4 76 4.0 4.5 4.2 0.8 94 chrX 14296470 intergenic not near genes chrX 14296517 intergenic not near genes chrX 14296564 intergenic not near genes chrX_4_14295001 chrX_14295001 RAL-381 2191 chrX 14636467 14636493 chrX 14641902 14641908 I-element 9 5437 3.5 3.0 3.2 2.1 5441 chrX 14636467 intron NetA - chrX 14639188 intron NetA - chrX 14641908 intron NetA - chrX_9_14635001 chrX_14635001 RAL-381 2192 chrX 14659890 14659914 chrX 14662571 14662596 13 2683 22.5 28.5 25.5 0.5 2706 chrX 14659890 intergenic not near genes chrX 14661243 intergenic not near genes chrX 14662596 intergenic not near genes chrX_13_14660001 chrX_14660001 RAL-381 2193 chrX 14714044 14714060 chrX 14714126 14714141 5 82 2.0 2.0 2.0 1.7 97 chrX 14714044 intron NetB - chrX 14714092 intron NetB - chrX 14714141 intron NetB - chrX_5_14710001 chrX_14710001 RAL-381 2194 chrX 14752829 14752863 chrX 14752913 14752947 4 84 1.5 1.5 1.5 1.6 118 chrX 14752829 intergenic not near genes chrX 14752888 intergenic not near genes chrX 14752947 intergenic not near genes chrX_4_14750001 chrX_14750001 RAL-381 2195 chrX 14778047 14778061 chrX 14782844 14782858 Doc 4 4797 2.5 3.0 2.8 1.1 4811 chrX 14778047 intergenic CG5347 + chrX 14780452 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-381 2196 chrX 14936862 14936893 chrX 14946119 14946150 roo 7 9257 3.5 4.0 3.8 1.5 9288 chrX 14936862 intron pdgy - chrX 14941506 intron pdgy - chrX 14946150 intron pdgy - chrX_7_14940001 chrX_14940001 RAL-381 2197 chrX 14968084 14968087 chrX 14968163 14968165 5 79 1.5 3.0 2.2 1.6 81 chrX 14968084 intron eag + chrX 14968124 intron eag + chrX 14968165 intron eag + chrX_5_14965001 chrX_14965001 RAL-381 2198 chrX 15247265 15247289 chrX 15247343 15247370 8 83 1.5 2.5 2.0 2.7 105 chrX 15247265 intergenic not near genes chrX 15247318 intergenic not near genes chrX 15247370 intergenic not near genes chrX_8_15245001 chrX_15245001 RAL-381 2199 chrX 15248268 15248295 chrX 15248342 15248349 4 67 2.0 1.5 1.8 1.4 81 chrX 15248268 intergenic not near genes chrX 15248308 intergenic not near genes chrX 15248349 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-381 2200 chrX 15273706 15273738 chrX 15274872 15274905 1360 13 1165 4.0 5.5 4.8 2.2 1199 chrX 15273706 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274905 intergenic not near genes chrX_13_15270001 chrX_15270001 RAL-381 2201 chrX 15369846 15369860 chrX 15369929 15369943 10 83 2.5 6.0 4.2 1.9 97 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369943 intron acj6 - chrX_10_15365001 chrX_15365001 RAL-381 2202 chrX 15413051 15413085 chrX 15417353 15417379 Juan 10 4301 6.0 3.0 4.5 1.8 4328 chrX 15413051 intron Cngl - chrX 15415215 intron Cngl - chrX 15417379 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-381 2203 chrX 15429232 15429262 chrX 15429314 15429344 12 82 1.0 5.5 3.2 2.9 112 chrX 15429232 intron Cngl - chrX 15429288 intron Cngl - chrX 15429344 intron Cngl - chrX_12_15425001 chrX_15425001 RAL-381 2204 chrX 15435692 15435705 chrX 15436125 15436138 rover 6 433 0.0 7.0 3.5 1.3 446 chrX 15435692 intron Cngl - chrX 15435915 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-381 2205 chrX 15524325 15524353 chrX 15524499 15524508 7 166 0.0 6.0 3.0 1.8 183 chrX 15524325 intron Ac13E - chrX 15524416 intron Ac13E - chrX 15524508 intron Ac13E - chrX_7_15520001 chrX_15520001 RAL-381 2206 chrX 15589434 15589461 chrX 15589613 15589640 7 177 3.5 5.0 4.2 1.3 206 chrX 15589434 intron CG9220 - chrX 15589537 intron CG9220 - chrX 15589640 exon CG9220 - chrX_7_15585001 chrX_15585001 RAL-381 2207 chrX 15666215 15666223 chrX 15666292 15666293 5 76 7.0 5.5 6.2 0.7 78 chrX 15666215 intergenic not near genes chrX 15666254 intergenic not near genes chrX 15666293 intergenic not near genes chrX_5_15665001 chrX_15665001 RAL-381 2208 chrX 15678053 15678059 chrX 15678130 15678133 5 76 5.5 6.5 6.0 0.7 80 chrX 15678053 intergenic CG12708 + chrX 15678093 intergenic CG12708 + chrX 15678133 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-381 2209 chrX 15678060 15678068 chrX 15678121 15678145 6 74 3.5 5.5 4.5 1.1 85 chrX 15678060 intergenic CG12708 + chrX 15678102 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-381 2210 chrX 15749659 15749677 chrX 15749761 15749780 4 103 0.5 1.5 1.0 2.0 121 chrX 15749659 intron CG8239 + chrX 15749720 intron CG8239 + chrX 15749780 intron CG8239 + chrX_4_15745001 chrX_15745001 RAL-381 2211 chrX 16091586 16091604 chrX 16092976 16092994 6 1388 1.5 1.0 1.2 2.7 1408 chrX 16091586 intergenic Tob - chrX 16092290 intergenic not near genes chrX 16092994 intergenic CG42353 -,CG42354 - chrX_6_16090001 chrX_16090001 RAL-381 2212 chrX 16329439 16329443 chrX 16329514 16329526 6 82 0.0 5.0 2.5 1.7 87 chrX 16329439 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329526 exon CG9919 - chrX_6_16325001 chrX_16325001 RAL-381 2213 chrX 16356523 16356543 chrX 16356641 16356661 6 118 1.5 1.5 1.5 2.4 138 chrX 16356523 intergenic sl +,U2af50 - chrX 16356592 intergenic U2af50 -,sl + chrX 16356661 intergenic U2af50 -,sl + chrX_6_16355001 chrX_16355001 RAL-381 2214 chrX 16492659 16492673 chrX 16498236 16498250 mdg3 6 5577 3.5 4.0 3.8 1.2 5591 chrX 16492659 intron para - chrX 16495454 intron para - chrX 16498250 intron para - chrX_6_16495001 chrX_16495001 RAL-381 2215 chrX 16529425 16529444 chrX 16529536 16529555 5 111 0.0 2.0 1.0 2.5 130 chrX 16529425 intron para - chrX 16529490 intron para - chrX 16529555 intron para - chrX_5_16525001 chrX_16525001 RAL-381 2216 chrX 16623483 16623502 chrX 16623569 16623588 9 86 3.5 0.0 1.8 3.2 105 chrX 16623483 intergenic not near genes chrX 16623536 intergenic Rok - chrX 16623588 intergenic Rok - chrX_9_16620001 chrX_16620001 RAL-381 2217 chrX 16809168 16809174 chrX 16812079 16812085 4 2911 1.0 6.0 3.5 0.9 2917 chrX 16809168 3` UTR CR44053 - chrX 16810626 intergenic not near genes chrX 16812085 intron CG4829 + chrX_4_16810001 chrX_16810001 RAL-381 2218 chrX 16815366 16815388 chrX 16815442 16815464 6 76 2.0 1.0 1.5 2.4 98 chrX 16815366 intron CG4829 + chrX 16815415 intron CG4829 + chrX 16815464 intron CG4829 + chrX_6_16815001 chrX_16815001 RAL-381 2219 chrX 16919758 16919787 chrX 16920024 16920053 11 264 1.0 0.5 0.8 6.1 295 chrX 16919758 intron CG4928 + chrX 16919906 intron CG4928 + chrX 16920053 intron CG4928 + chrX_11_16915001 chrX_16915001 RAL-381 2220 chrX 16936002 16936032 chrX 16936420 16936450 jockey 4 418 1.5 0.0 0.8 2.2 448 chrX 16936002 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936450 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-381 2221 chrX 17011966 17012000 chrX 17012048 17012082 8 80 4.5 5.5 5.0 1.3 116 chrX 17011966 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012082 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-381 2222 chrX 17352599 17352623 chrX 17352702 17352726 10 103 0.0 0.5 0.2 8.3 127 chrX 17352599 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352726 intergenic not near genes chrX_10_17350001 chrX_17350001 RAL-381 2223 chrX 17680889 17680924 chrX 17680966 17681001 16 76 1.5 3.5 2.5 4.6 112 chrX 17680889 intron chas - chrX 17680945 intron chas - chrX 17681001 intron chas - chrX_16_17680001 chrX_17680001 RAL-381 2224 chrX 17766361 17766377 chrX 17766459 17766475 7 96 3.5 4.5 4.0 1.4 114 chrX 17766361 intergenic not near genes chrX 17766418 intergenic not near genes chrX 17766475 intergenic not near genes chrX_7_17765001 chrX_17765001 RAL-381 2225 chrX 17792950 17792979 chrX 17796248 17796277 flea 6 3298 3.0 5.5 4.2 1.2 3327 chrX 17792950 intron OdsH + chrX 17794614 intron OdsH + chrX 17796277 intron OdsH + chrX_6_17790001 chrX_17790001 RAL-381 2226 chrX 17875753 17875782 chrX 17876025 17876054 8 270 4.0 4.5 4.2 1.5 301 chrX 17875753 intron mnb - chrX 17875904 intron mnb - chrX 17876054 intron mnb - chrX_8_17875001 chrX_17875001 RAL-381 2227 chrX 17881478 17881500 chrX 17881677 17881699 13 198 5.0 0.0 2.5 3.7 221 chrX 17881478 intron mnb - chrX 17881588 intron mnb - chrX 17881699 intron mnb - chrX_13_17880001 chrX_17880001 RAL-381 2228 chrX 18122825 18122846 chrX 18122901 18122922 9 76 2.5 2.0 2.2 2.8 97 chrX 18122825 5` UTR CR45606 + chrX 18122874 5` UTR CR45606 + chrX 18122922 intergenic CR45606 + chrX_9_18120001 chrX_18120001 RAL-381 2229 chrX 18188382 18188420 chrX 18189895 18189933 10 1513 39.0 27.0 33.0 0.3 1551 chrX 18188382 intron Frq2 + chrX 18189158 intron Frq2 + chrX 18189933 intron Frq2 + chrX_10_18185001 chrX_18185001 RAL-381 2230 chrX 18194068 18194101 chrX 18194603 18194610 BS 12 532 1.5 2.5 2.0 4.0 542 chrX 18194068 intron Frq2 + chrX 18194339 intron Frq2 + chrX 18194610 intron Frq2 + chrX_12_18190001 chrX_18190001 RAL-381 2231 chrX 18426839 18426864 chrX 18426925 18426950 5 86 5.0 3.0 4.0 1.0 111 chrX 18426839 3` UTR CG42323 + chrX 18426894 3` UTR CG42323 + chrX 18426950 3` UTR CG42323 + chrX_5_18425001 chrX_18425001 RAL-381 2232 chrX 18427382 18427407 chrX 18427793 18427818 11 411 1.0 2.5 1.8 3.9 436 chrX 18427382 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427818 intergenic not near genes chrX_11_18425001 chrX_18425001 RAL-381 2233 chrX 18469863 18469883 chrX 18469956 18469976 5 93 3.0 2.0 2.5 1.4 113 chrX 18469863 intron CG32547 - chrX 18469920 intron CG32547 - chrX 18469976 intron CG32547 - chrX_5_18465001 chrX_18465001 RAL-381 2234 chrX 18486113 18486143 chrX 18486202 18486232 13 88 5.0 5.5 5.2 2.1 119 chrX 18486113 exon psh - chrX 18486172 intron psh - chrX 18486232 intron psh - chrX_13_18485001 chrX_18485001 RAL-381 2235 chrX 18645013 18645047 chrX 18645111 18645145 9 98 6.5 2.5 4.5 1.6 132 chrX 18645013 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645145 intron Rip11 - chrX_9_18645001 chrX_18645001 RAL-381 2236 chrX 18688249 18688276 chrX 18688372 18688399 4 123 1.5 3.0 2.2 1.2 150 chrX 18688249 3` UTR phm + chrX 18688324 3` UTR phm + chrX 18688399 3` UTR phm + chrX_4_18685001 chrX_18685001 RAL-381 2237 chrX 18854317 18854338 chrX 18854390 18854417 4 76 2.5 2.5 2.5 1.1 100 chrX 18854317 exon CG34422 + chrX 18854367 exon CG34422 + chrX 18854417 exon CG34422 + chrX_4_18850001 chrX_18850001 RAL-381 2238 chrX 18896518 18896545 chrX 18896628 18896654 9 110 3.0 0.5 1.8 3.2 136 chrX 18896518 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_9_18895001 chrX_18895001 RAL-381 2239 chrX 18896908 18896941 chrX 18896985 18897018 8 77 5.0 3.5 4.2 1.5 110 chrX 18896908 intergenic CG7349 + chrX 18896963 intergenic CG7349 + chrX 18897018 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-381 2240 chrX 18950491 18950517 chrX 18952432 18952459 5 1941 6.5 2.5 4.5 0.9 1968 chrX 18950491 intron CG43759 + chrX 18951475 intron CG43759 + chrX 18952459 intron CG43759 + chrX_5_18950001 chrX_18950001 RAL-381 2241 chrX 18994464 18994465 chrX 18994541 18994542 4 76 6.5 9.0 7.8 0.5 78 chrX 18994464 intron CG43759 + chrX 18994503 intron CG43759 + chrX 18994542 intron CG43759 + chrX_4_18990001 chrX_18990001 RAL-381 2242 chrX 19020592 19020622 chrX 19020670 19020700 7 78 0.0 1.5 0.8 3.9 108 chrX 19020592 intron CG43759 + chrX 19020646 intron CG43759 + chrX 19020700 intron CG43759 + chrX_7_19020001 chrX_19020001 RAL-381 2243 chrX 19036446 19036450 chrX 19036522 19036526 4 76 0.0 0.0 0.0 4.0 80 chrX 19036446 intergenic not near genes chrX 19036486 intergenic not near genes chrX 19036526 intergenic not near genes chrX_4_19035001 chrX_19035001 RAL-381 2244 chrX 19060409 19060438 chrX 19065193 19065222 Doc 6 4784 2.0 3.5 2.8 1.6 4813 chrX 19060409 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065222 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-381 2245 chrX 19099666 19099682 chrX 19099749 19099765 7 83 4.0 3.0 3.5 1.6 99 chrX 19099666 intergenic not near genes chrX 19099716 intergenic not near genes chrX 19099765 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-381 2246 chrX 19106026 19106046 chrX 19106243 19106263 9 215 2.0 2.0 2.0 3.0 237 chrX 19106026 intergenic not near genes chrX 19106144 intergenic not near genes chrX 19106263 intergenic not near genes chrX_9_19105001 chrX_19105001 RAL-381 2247 chrX 19109110 19109136 chrX 19109294 19109320 11 183 0.5 2.5 1.5 4.4 210 chrX 19109110 intergenic not near genes chrX 19109215 intergenic not near genes chrX 19109320 intergenic not near genes chrX_11_19105001 chrX_19105001 RAL-381 2248 chrX 19124437 19124451 chrX 19124525 19124539 4 88 1.0 0.5 0.8 2.2 102 chrX 19124437 intergenic CG15882 - chrX 19124488 intergenic CG15882 - chrX 19124539 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-381 2249 chrX 19176208 19176237 chrX 19176292 19176321 20 83 3.5 6.0 4.8 3.4 113 chrX 19176208 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176321 3` UTR CG7556 - chrX_20_19175001 chrX_19175001 RAL-381 2250 chrX 13057298 13057300 chrX 19242812 19242814 12 6185514 4.5 5.0 4.8 2.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_12_16150001 chrX_16150001 RAL-381 2251 chrX 19356986 19357009 chrX 19358427 19358450 NOF 6 1440 3.0 0.0 1.5 2.4 1464 chrX 19356986 intron kek5 + chrX 19357718 intron kek5 + chrX 19358450 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-381 2252 chrX 19380157 19380174 chrX 19380397 19380411 pogo 5 240 6.5 2.0 4.2 1.0 254 chrX 19380157 intron kek5 + chrX 19380284 intron kek5 + chrX 19380411 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-381 2253 chrX 19472126 19472157 chrX 19472696 19472719 jockey 13 566 2.0 3.0 2.5 3.7 593 chrX 19472126 intergenic kek5 + chrX 19472422 intergenic not near genes chrX 19472719 intergenic not near genes chrX_13_19470001 chrX_19470001 RAL-381 2254 chrX 19497744 19497772 chrX 19497945 19497975 5 202 3.5 3.0 3.2 1.2 231 chrX 19497744 intron,intron CG14200 +,Pfrx + chrX 19497860 intron,intron CG14200 +,Pfrx + chrX 19497975 intron,intron CG14200 +,Pfrx + chrX_5_19495001 chrX_19495001 RAL-381 2255 chrX 19542136 19542163 chrX 19542233 19542261 6 98 2.5 0.5 1.5 2.4 125 chrX 19542136 intron CG32532 - chrX 19542198 intron CG32532 - chrX 19542261 intron CG32532 - chrX_6_19540001 chrX_19540001 RAL-381 2256 chrX 19599050 19599064 chrX 19599128 19599142 6 78 3.0 9.0 6.0 0.9 92 chrX 19599050 3` UTR RpS10b + chrX 19599096 3` UTR RpS10b + chrX 19599142 3` UTR RpS10b + chrX_6_19595001 chrX_19595001 RAL-381 2257 chrX 19662030 19662056 chrX 19662253 19662279 10 223 3.0 2.5 2.8 2.6 249 chrX 19662030 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662279 intron CG14223 - chrX_10_19660001 chrX_19660001 RAL-381 2258 chrX 19822833 19822864 chrX 19823000 19823031 11 159 1.5 2.5 2.0 3.7 198 chrX 19822833 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823031 intergenic skpE - chrX_11_19820001 chrX_19820001 RAL-381 2259 chrX 19881454 19881471 chrX 19881535 19881543 4 79 5.5 1.0 3.2 1.0 89 chrX 19881454 intron Hers + chrX 19881498 intron Hers + chrX 19881543 intron Hers + chrX_4_19880001 chrX_19880001 RAL-381 2260 chrX 19884098 19884118 chrX 19884169 19884193 4 70 2.0 5.0 3.5 0.9 95 chrX 19884098 intron Hers + chrX 19884146 intron Hers + chrX 19884193 intron Hers + chrX_4_19880001 chrX_19880001 RAL-381 2261 chrX 19897382 19897413 chrX 19897456 19897490 9 77 1.5 2.5 2.0 3.0 108 chrX 19897382 intron Hers + chrX 19897436 intron Hers + chrX 19897490 intron Hers + chrX_9_19895001 chrX_19895001 RAL-381 2262 chrX 20065810 20065826 chrX 20065889 20065905 6 79 2.5 5.0 3.8 1.2 95 chrX 20065810 intergenic not near genes chrX 20065858 intergenic not near genes chrX 20065905 intergenic not near genes chrX_6_20065001 chrX_20065001 RAL-381 2263 chrX 20124087 20124096 chrX 20124226 20124235 5 139 1.0 0.5 0.8 2.8 148 chrX 20124087 intron CG34331 + chrX 20124161 intron CG34331 + chrX 20124235 intron CG34331 + chrX_5_20120001 chrX_20120001 RAL-381 2264 chrX 20312880 20312908 chrX 20312958 20312986 8 76 3.5 2.5 3.0 2.0 106 chrX 20312880 intron CG1504 - chrX 20312933 intron CG1504 - chrX 20312986 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-381 2265 chrX 20362874 20362881 chrX 20362951 20362956 4 76 3.5 0.5 2.0 1.3 82 chrX 20362874 intergenic not near genes chrX 20362915 intergenic not near genes chrX 20362956 intergenic not near genes chrX_4_20360001 chrX_20360001 RAL-381 2266 chrX 20374092 20374123 chrX 20374168 20374199 13 73 3.5 2.5 3.0 3.2 107 chrX 20374092 intergenic not near genes chrX 20374146 intergenic not near genes chrX 20374199 intergenic not near genes chrX_13_20370001 chrX_20370001 RAL-381 2267 chrX 20377328 20377351 chrX 20378793 20378799 hobo 9 1464 8.0 5.5 6.8 1.2 1471 chrX 20377328 intergenic not near genes chrX 20378064 intergenic not near genes chrX 20378799 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-381 2268 chrX 20426177 20426211 chrX 20428371 20428406 6 2194 48.0 40.5 44.2 0.1 2229 chrX 20426177 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_6_20425001 chrX_20425001 RAL-381 2269 chrX 20443169 20443192 chrX 20443245 20443268 6 75 6.0 2.0 4.0 1.2 99 chrX 20443169 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443268 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-381 2270 chrX 20504126 20504156 chrX 20505647 20505677 transib2 6 1520 5.0 5.5 5.2 1.0 1551 chrX 20504126 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505677 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-381 2271 chrX 20517247 20517260 chrX 20517333 20517346 7 86 3.5 0.0 1.8 2.5 99 chrX 20517247 intron Tak1 - chrX 20517296 intron Tak1 - chrX 20517346 intron Tak1 - chrX_7_20515001 chrX_20515001 RAL-381 2272 chrX 20528599 20528631 chrX 20528947 20528979 9 348 1.0 2.0 1.5 3.6 380 chrX 20528599 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20528979 intergenic not near genes chrX_9_20525001 chrX_20525001 RAL-381 2273 chrX 20549959 20549993 chrX 20550134 20550168 16 172 3.5 2.5 3.0 4.0 209 chrX 20549959 intron RunxB + chrX 20550064 intron RunxB + chrX 20550168 intron RunxB + chrX_16_20550001 chrX_20550001 RAL-381 2274 chrX 20662312 20662331 chrX 20662395 20662408 7 82 3.5 0.0 1.8 2.5 96 chrX 20662312 intron CG1835 + chrX 20662360 intron CG1835 + chrX 20662408 intron CG1835 + chrX_7_20660001 chrX_20660001 RAL-381 2275 chrX 20710419 20710442 chrX 20710497 20710520 8 78 0.0 2.5 1.2 3.6 101 chrX 20710419 intergenic not near genes chrX 20710470 intergenic not near genes chrX 20710520 intergenic not near genes chrX_8_20710001 chrX_20710001 RAL-381 2276 chrX 20836728 20836758 chrX 20844330 20844360 roo 7 7600 0.5 2.5 1.5 2.8 7632 chrX 20836728 intron shakB - chrX 20840544 intron shakB - chrX 20844360 intron shakB - chrX_7_20840001 chrX_20840001 RAL-381 2277 chrX 20890512 20890550 chrX 20890597 20890635 10 85 2.0 1.5 1.8 3.6 123 chrX 20890512 intron shakB - chrX 20890574 intron shakB - chrX 20890635 intron shakB - chrX_10_20890001 chrX_20890001 RAL-381 2278 chrX 20900280 20900300 chrX 20900363 20900382 5 83 1.5 4.0 2.8 1.3 102 chrX 20900280 intron shakB - chrX 20900331 intron shakB - chrX 20900382 intron shakB - chrX_5_20900001 chrX_20900001 RAL-381 2279 chrX 20940718 20940756 chrX 20942187 20942225 hobo 13 1469 4.5 6.0 5.2 2.1 1507 chrX 20940718 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_13_20940001 chrX_20940001 RAL-381 2280 chrX 20947862 20947875 chrX 20947937 20947966 6 84 2.0 3.5 2.8 1.6 104 chrX 20947862 intergenic not near genes chrX 20947914 intergenic not near genes chrX 20947966 intergenic not near genes chrX_6_20945001 chrX_20945001 RAL-381 2281 chrX 20952038 20952061 chrX 20952122 20952145 6 84 2.0 3.0 2.5 1.7 107 chrX 20952038 intergenic not near genes chrX 20952092 intergenic not near genes chrX 20952145 intergenic not near genes chrX_6_20950001 chrX_20950001 RAL-381 2282 chrX 21076337 21076342 chrX 21076415 21076421 4 78 2.5 2.0 2.2 1.2 84 chrX 21076337 intron bves + chrX 21076379 intron bves + chrX 21076421 intron bves + chrX_4_21075001 chrX_21075001 RAL-381 2283 chrX 21084567 21084584 chrX 21085080 21085099 4 514 1.0 4.0 2.5 1.1 532 chrX 21084567 intergenic not near genes chrX 21084833 intergenic not near genes chrX 21085099 intergenic not near genes chrX_4_21080001 chrX_21080001 RAL-381 2284 chrX 21086130 21086164 chrX 21087159 21087189 jockey 9 1027 3.0 3.5 3.2 2.1 1059 chrX 21086130 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087189 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-381 2285 chrX 21197061 21197087 chrX 21197135 21197165 11 76 6.0 2.5 4.2 2.1 104 chrX 21197061 intergenic not near genes chrX 21197113 intergenic not near genes chrX 21197165 intergenic not near genes chrX_11_21195001 chrX_21195001 RAL-381 2286 chrX 21247880 21247903 chrX 21247992 21248015 4 112 5.5 1.0 3.2 1.0 135 chrX 21247880 intron CG32521 - chrX 21247948 intron CG32521 - chrX 21248015 intron CG32521 - chrX_4_21245001 chrX_21245001 RAL-381 2287 chrX 21254652 21254674 chrX 21255568 21255590 hopper2 6 914 2.0 0.5 1.2 2.7 938 chrX 21254652 intron CG32521 - chrX 21255121 intron CG32521 - chrX 21255590 intron CG32521 - chrX_6_21255001 chrX_21255001 RAL-381 2288 chrX 21308694 21308876 chrX 21308861 21308982 4 121 3.0 11.0 7.0 0.5 288 chrX 21308694 exon CG1801 - chrX 21308838 exon CG1801 - chrX 21308982 intron CG1801 - chrX_4_21305001 chrX_21305001 RAL-381 2289 chrX 21328126 21328140 chrX 21328237 21328251 4 111 0.5 0.0 0.2 3.3 125 chrX 21328126 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328251 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-381 2290 chrX 21358075 21358096 chrX 21358155 21358176 5 80 3.0 2.5 2.8 1.3 101 chrX 21358075 intergenic sol +,Sep1 + chrX 21358126 intergenic Sep1 +,sol + chrX 21358176 intergenic Sep1 +,sol + chrX_5_21355001 chrX_21355001 RAL-381 2291 chrX 21428337 21428345 chrX 21428527 21428535 5 190 5.0 2.0 3.5 1.1 198 chrX 21428337 intron CG42343 - chrX 21428436 intron CG42343 - chrX 21428535 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-381 2292 chrX 21458693 21458710 chrX 21464128 21464146 Ivk 4 5436 0.0 2.5 1.2 1.8 5453 chrX 21458693 intergenic not near genes chrX 21461420 intergenic not near genes chrX 21464146 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-381 2293 chrX 21467018 21467035 chrX 21467102 21467119 9 84 3.5 0.0 1.8 3.2 101 chrX 21467018 intergenic CR45507 - chrX 21467068 intergenic CR45507 - chrX 21467119 intergenic CR45507 - chrX_9_21465001 chrX_21465001 RAL-381 2294 chrX 21474402 21474433 chrX 21474768 21474799 1731 13 366 4.0 2.0 3.0 3.2 397 chrX 21474402 intergenic not near genes chrX 21474600 intergenic not near genes chrX 21474799 intergenic not near genes chrX_13_21470001 chrX_21470001 RAL-381 2295 chrX 21500562 21500587 chrX 21500763 21500788 5 201 0.0 2.0 1.0 2.5 226 chrX 21500562 intron CR45082 - chrX 21500675 intron CR45082 - chrX 21500788 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-381 2296 chrX 21516995 21517021 chrX 21517074 21517075 4 73 4.0 4.5 4.2 0.8 80 chrX 21516995 intron CR45082 - chrX 21517035 intron CR45082 - chrX 21517075 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-381 2297 chrX 21565412 21565440 chrX 21565490 21565518 7 77 4.0 1.5 2.8 1.8 106 chrX 21565412 intergenic not near genes chrX 21565465 intergenic not near genes chrX 21565518 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-381 2298 chrX 21624910 21624942 chrX 21625000 21625032 7 89 2.0 2.0 2.0 2.3 122 chrX 21624910 3` UTR DIP1 - chrX 21624971 3` UTR DIP1 - chrX 21625032 3` UTR DIP1 - chrX_7_21620001 chrX_21620001 RAL-381 2299 chrX 21631088 21631112 chrX 21631173 21631197 4 85 2.5 5.5 4.0 0.8 109 chrX 21631088 intron CR44712 + chrX 21631142 5` UTR CR44712 + chrX 21631197 5` UTR CR44712 + chrX_4_21630001 chrX_21630001 RAL-381 2300 chrX 21668258 21668290 chrX 21668343 21668375 8 85 1.0 0.0 0.5 5.3 117 chrX 21668258 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668375 intergenic not near genes chrX_8_21665001 chrX_21665001 RAL-381 2301 chrX 22506979 22507016 chrX 22507064 22507081 12 83 1.0 3.0 2.0 4.0 102 chrX 22506979 intron l(1)G0196 + chrX 22507030 intron l(1)G0196 + chrX 22507081 intron l(1)G0196 + chrX_12_22505001 chrX_22505001 RAL-381 2302 chrX 22522637 22522654 chrX 22525457 22525474 NOF 7 2820 0.0 0.5 0.2 5.8 2837 chrX 22522637 intron CG17600 + chrX 22524056 intron CG17600 + chrX 22525474 intron CG17600 + chrX_7_22520001 chrX_22520001 RAL-381 2303 chrX 22697496 22697512 chrX 22701793 22701809 Juan 7 4297 6.5 3.5 5.0 1.2 4313 chrX 22697496 intron CR44997 + chrX 22699652 intron CR44997 + chrX 22701809 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-381 2304 chrX 22771509 22771539 chrX 22774797 22774830 297 8 3290 2.0 2.5 2.2 2.5 3321 chrX 22771509 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774830 intron CR44997 + chrX_8_22770001 chrX_22770001 RAL-381 2305 chrX 22824237 22824439 chrX 22824357 22824572 5 127 1.0 1.5 1.2 2.3 335 chrX 22824237 intergenic fog - chrX 22824404 3` UTR fog - chrX 22824572 3` UTR fog - chrX_5_22820001 chrX_22820001 RAL-381 2306 chrX 22867980 22868008 chrX 22868094 22868120 10 113 3.0 0.0 1.5 4.0 140 chrX 22867980 exon CG42346 + chrX 22868050 intron CG42346 + chrX 22868120 intron CG42346 + chrX_10_22865001 chrX_22865001 RAL-381 2307 chrX 22870877 22870899 chrX 22870968 22870990 10 89 2.5 4.5 3.5 2.2 113 chrX 22870877 intron,3` UTR CG42346 +,CR43656 - chrX 22870934 intron,3` UTR CG42346 +,CR43656 - chrX 22870990 intron,3` UTR CG42346 +,CR43656 - chrX_10_22870001 chrX_22870001 RAL-381 2308 chrX 22893492 22893523 chrX 22893573 22893583 13 78 0.0 3.0 1.5 5.2 91 chrX 22893492 intergenic not near genes chrX 22893538 intergenic not near genes chrX 22893583 intergenic not near genes chrX_13_22890001 chrX_22890001 RAL-381 2309 chrX 22996315 22996329 chrX 23003549 23003563 roo 6 7234 2.0 3.5 2.8 1.6 7248 chrX 22996315 intron,intron stnA -,stnB - chrX 22999939 intron,intron stnA -,stnB - chrX 23003563 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-381 2310 chrY 975807 975819 chrY 975881 975899 6 83 121.0 154.0 137.5 0.0 92 chrY 975807 intergenic not near genes chrY 975853 intergenic not near genes chrY 975899 intergenic not near genes chrY_6_975001 chrY_975001 RAL-381