SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47487 chr2L 52564 52592 jockey 14 5105 8.0 2.5 5.2 2.3 5133 chr2L 47459 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_14_50001 chr2L_50001 RAL-380 2 chr2L 135578 135588 chr2L 136130 136139 6 551 3.5 4.5 4.0 1.2 561 chr2L 135578 intron,5` UTR CG11455 +,CR44185 + chr2L 135858 intron,5` UTR CG11455 +,CR44185 + chr2L 136139 intron CG11455 + chr2L_6_135001 chr2L_135001 RAL-380 3 chr2L 263299 263330 chr2L 263445 263476 8 145 0.0 3.0 1.5 3.2 177 chr2L 263299 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263476 intron,3` UTR CG3645 -,CG17075 - chr2L_8_260001 chr2L_260001 RAL-380 4 chr2L 297689 297718 chr2L 297789 297818 5 100 1.5 2.5 2.0 1.7 129 chr2L 297689 intergenic Pi3K21B +,Hop + chr2L 297754 intergenic Pi3K21B +,Hop + chr2L 297818 intergenic Pi3K21B +,Hop + chr2L_5_295001 chr2L_295001 RAL-380 5 chr2L 314124 314155 chr2L 314201 314232 9 77 1.5 2.5 2.0 3.0 108 chr2L 314124 intron Plc21C + chr2L 314178 intron Plc21C + chr2L 314232 intron Plc21C + chr2L_9_310001 chr2L_310001 RAL-380 6 chr2L 323459 323482 chr2L 323537 323540 6 72 4.0 5.0 4.5 1.1 81 chr2L 323459 intron Plc21C + chr2L 323500 intron Plc21C + chr2L 323540 intron Plc21C + chr2L_6_320001 chr2L_320001 RAL-380 7 chr2L 325129 325144 chr2L 325205 325221 5 77 7.0 6.5 6.8 0.6 92 chr2L 325129 intron Plc21C + chr2L 325175 intron Plc21C + chr2L 325221 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-380 8 chr2L 347887 347916 chr2L 355385 355415 blood 14 7499 3.0 2.0 2.5 4.0 7528 chr2L 347887 3` UTR Plc21C + chr2L 351651 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_14_350001 chr2L_350001 RAL-380 9 chr2L 407948 407970 chr2L 408029 408051 7 81 2.5 1.0 1.8 2.5 103 chr2L 407948 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408051 3` UTR AP-2alpha - chr2L_7_405001 chr2L_405001 RAL-380 10 chr2L 666279 666287 chr2L 666355 666363 5 76 5.0 0.0 2.5 1.4 84 chr2L 666279 intron ds - chr2L 666321 intron ds - chr2L 666363 intron ds - chr2L_5_665001 chr2L_665001 RAL-380 11 chr2L 686924 686952 chr2L 695963 695992 roo 5 9039 2.5 3.5 3.0 1.2 9068 chr2L 686924 intron ds - chr2L 691458 intron ds - chr2L 695992 intron ds - chr2L_5_690001 chr2L_690001 RAL-380 12 chr2L 763596 763627 chr2L 763672 763679 8 71 3.0 4.5 3.8 1.7 83 chr2L 763596 intergenic not near genes chr2L 763638 intergenic not near genes chr2L 763679 intergenic not near genes chr2L_8_760001 chr2L_760001 RAL-380 13 chr2L 769661 769685 chr2L 769890 769919 8 230 1.5 4.5 3.0 2.0 258 chr2L 769661 intergenic not near genes chr2L 769790 intergenic not near genes chr2L 769919 intergenic not near genes chr2L_8_765001 chr2L_765001 RAL-380 14 chr2L 770464 770494 chr2L 772245 772245 Bari1 8 1774 2.5 3.0 2.8 2.1 1781 chr2L 770464 intergenic not near genes chr2L 771354 intergenic not near genes chr2L 772245 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-380 15 chr2L 850830 850837 chr2L 850915 850921 5 85 5.5 4.5 5.0 0.8 91 chr2L 850830 5` UTR,5` UTR drongo -,CR44060 + chr2L 850876 5` UTR,5` UTR drongo -,CR44060 + chr2L 850921 5` UTR,5` UTR drongo -,CR44060 + chr2L_5_850001 chr2L_850001 RAL-380 16 chr2L 870835 870868 chr2L 870945 870978 10 110 3.5 5.5 4.5 1.8 143 chr2L 870835 5` UTR PNUTS + chr2L 870906 5` UTR PNUTS + chr2L 870978 5` UTR PNUTS + chr2L_10_870001 chr2L_870001 RAL-380 17 chr2L 877841 877866 chr2L 877922 877929 8 78 7.5 1.5 4.5 1.5 88 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877885 3` UTR,intron CG15824 -,ninaA + chr2L 877929 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-380 18 chr2L 964556 964566 chr2L 964640 964645 4 82 6.0 5.0 5.5 0.6 89 chr2L 964556 intergenic not near genes chr2L 964600 intergenic not near genes chr2L 964645 intergenic not near genes chr2L_4_960001 chr2L_960001 RAL-380 19 chr2L 1066102 1066128 chr2L 1066181 1066209 13 79 5.0 4.5 4.8 2.2 107 chr2L 1066102 intron S - chr2L 1066156 intron S - chr2L 1066209 intron S - chr2L_13_1065001 chr2L_1065001 RAL-380 20 chr2L 1126682 1126706 chr2L 1126750 1126782 14 72 3.0 6.0 4.5 2.5 100 chr2L 1126682 intron Pino - chr2L 1126732 intron Pino - chr2L 1126782 intron Pino - chr2L_14_1125001 chr2L_1125001 RAL-380 21 chr2L 1156868 1156893 chr2L 1156963 1156966 6 95 3.0 2.0 2.5 1.7 98 chr2L 1156868 intron capt - chr2L 1156917 intron capt - chr2L 1156966 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-380 22 chr2L 1164254 1164278 chr2L 1164340 1164364 7 85 4.0 2.5 3.2 1.7 110 chr2L 1164254 intergenic IntS14 +,CG5080 - chr2L 1164309 intergenic IntS14 +,CG5080 - chr2L 1164364 intergenic IntS14 +,CG5080 - chr2L_7_1160001 chr2L_1160001 RAL-380 23 chr2L 1220127 1220160 chr2L 1227593 1227626 blood 10 7465 2.0 3.0 2.5 2.9 7499 chr2L 1220127 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-380 24 chr2L 1261152 1261256 chr2L 1261225 1261337 5 79 0.5 0.5 0.5 3.3 185 chr2L 1261152 intron robo3 + chr2L 1261244 intron robo3 + chr2L 1261337 intron robo3 + chr2L_5_1260001 chr2L_1260001 RAL-380 25 chr2L 1267405 1267417 chr2L 1267481 1267493 6 76 11.5 3.5 7.5 0.7 88 chr2L 1267405 intron robo3 + chr2L 1267449 intron robo3 + chr2L 1267493 intron robo3 + chr2L_6_1265001 chr2L_1265001 RAL-380 26 chr2L 1267418 1267438 chr2L 1267479 1267495 8 68 6.5 3.0 4.8 1.4 77 chr2L 1267418 intron robo3 + chr2L 1267456 intron robo3 + chr2L 1267495 intron robo3 + chr2L_8_1265001 chr2L_1265001 RAL-380 27 chr2L 1327075 1327104 chr2L 1327151 1327180 8 74 0.5 2.5 1.5 3.2 105 chr2L 1327075 intergenic not near genes chr2L 1327128 intergenic not near genes chr2L 1327180 intergenic not near genes chr2L_8_1325001 chr2L_1325001 RAL-380 28 chr2L 1343536 1343557 chr2L 1343728 1343750 4 193 1.5 2.0 1.8 1.4 214 chr2L 1343536 exon CG33922 - chr2L 1343643 intron CG33922 - chr2L 1343750 exon CG33922 - chr2L_4_1340001 chr2L_1340001 RAL-380 29 chr2L 1399173 1399197 chr2L 1399295 1399319 5 122 1.0 4.5 2.8 1.3 146 chr2L 1399173 intron lea - chr2L 1399246 intron lea - chr2L 1399319 intron lea - chr2L_5_1395001 chr2L_1395001 RAL-380 30 chr2L 1442432 1442440 chr2L 1442535 1442543 4 103 2.0 6.5 4.2 0.8 111 chr2L 1442432 intergenic CG43402 + chr2L 1442488 intergenic CG43402 + chr2L 1442543 intergenic CG43402 + chr2L_4_1440001 chr2L_1440001 RAL-380 31 chr2L 1514577 1514607 chr2L 1514668 1514698 9 88 4.0 2.0 3.0 2.2 121 chr2L 1514577 intergenic not near genes chr2L 1514638 intergenic not near genes chr2L 1514698 intergenic not near genes chr2L_9_1510001 chr2L_1510001 RAL-380 32 chr2L 1570702 1570715 chr2L 1573574 1573587 F-element 4 2872 6.5 3.0 4.8 0.7 2885 chr2L 1570702 intron haf + chr2L 1572144 intron haf + chr2L 1573587 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-380 33 chr2L 1628845 1628852 chr2L 1628934 1628941 4 89 1.0 3.5 2.2 1.2 96 chr2L 1628845 intergenic not near genes chr2L 1628893 intergenic not near genes chr2L 1628941 intergenic not near genes chr2L_4_1625001 chr2L_1625001 RAL-380 34 chr2L 1711358 1711384 chr2L 1711679 1711707 mdg3 5 322 4.0 4.0 4.0 1.0 349 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-380 35 chr2L 1833415 1833450 chr2L 1833496 1833530 6 81 1.0 2.0 1.5 2.4 115 chr2L 1833415 intergenic not near genes chr2L 1833472 intergenic not near genes chr2L 1833530 intergenic not near genes chr2L_6_1830001 chr2L_1830001 RAL-380 36 chr2L 1993196 1993229 chr2L 1993282 1993306 7 83 3.0 7.0 5.0 1.2 110 chr2L 1993196 intergenic not near genes chr2L 1993251 intergenic not near genes chr2L 1993306 intergenic not near genes chr2L_7_1990001 chr2L_1990001 RAL-380 37 chr2L 2010457 2010486 chr2L 2010569 2010595 11 109 1.5 2.5 2.0 3.7 138 chr2L 2010457 intron CG4238 + chr2L 2010526 intron CG4238 + chr2L 2010595 intron CG4238 + chr2L_11_2010001 chr2L_2010001 RAL-380 38 chr2L 2024517 2024547 chr2L 2024605 2024635 5 88 3.0 3.0 3.0 1.2 118 chr2L 2024517 intron CG4238 + chr2L 2024576 intron CG4238 + chr2L 2024635 intron CG4238 + chr2L_5_2020001 chr2L_2020001 RAL-380 39 chr2L 2084411 2084422 chr2L 2085355 2085363 4 945 6.0 2.5 4.2 0.8 952 chr2L 2084411 intron,5` UTR dpr3 -,CR44055 + chr2L 2084887 intron dpr3 - chr2L 2085363 intron dpr3 - chr2L_4_2080001 chr2L_2080001 RAL-380 40 chr2L 2089938 2089952 chr2L 2090247 2090256 4 308 3.0 4.5 3.8 0.8 318 chr2L 2089938 intron dpr3 - chr2L 2090097 intron dpr3 - chr2L 2090256 intron dpr3 - chr2L_4_2090001 chr2L_2090001 RAL-380 41 chr2L 2100388 2100407 chr2L 2109528 2109545 roo 10 9144 1.0 2.0 1.5 4.0 9157 chr2L 2100388 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109545 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-380 42 chr2L 2134203 2134213 chr2L 2134322 2134339 4 121 6.0 3.5 4.8 0.7 136 chr2L 2134203 intron GlyP + chr2L 2134271 intron GlyP + chr2L 2134339 intron GlyP + chr2L_4_2130001 chr2L_2130001 RAL-380 43 chr2L 2294045 2294073 chr2L 2299250 2299277 copia 6 5201 3.0 4.0 3.5 1.3 5232 chr2L 2294045 intergenic not near genes chr2L 2296661 intergenic not near genes chr2L 2299277 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-380 44 chr2L 2303514 2303535 chr2L 2303584 2303617 11 79 4.5 3.5 4.0 2.2 103 chr2L 2303514 intergenic not near genes chr2L 2303566 intergenic not near genes chr2L 2303617 intergenic not near genes chr2L_11_2300001 chr2L_2300001 RAL-380 45 chr2L 2317606 2317622 chr2L 2317680 2317683 7 70 13.5 6.5 10.0 0.6 77 chr2L 2317606 intron,intron CG9967 -,eys + chr2L 2317644 intron,intron CG9967 -,eys + chr2L 2317683 intron,intron CG9967 -,eys + chr2L_7_2315001 chr2L_2315001 RAL-380 46 chr2L 2372366 2372404 chr2L 2372452 2372484 6 84 0.0 1.0 0.5 4.0 118 chr2L 2372366 intergenic CG3609 - chr2L 2372425 intergenic CG3609 - chr2L 2372484 3` UTR CG3609 - chr2L_6_2370001 chr2L_2370001 RAL-380 47 chr2L 2472574 2472600 chr2L 2472752 2472777 13 177 2.5 5.5 4.0 2.6 203 chr2L 2472574 3` UTR CR45286 - chr2L 2472676 3` UTR CR45286 - chr2L 2472777 3` UTR CR45286 - chr2L_13_2470001 chr2L_2470001 RAL-380 48 chr2L 2543489 2543510 chr2L 2543587 2543618 7 103 6.0 2.5 4.2 1.3 129 chr2L 2543489 intergenic not near genes chr2L 2543554 intergenic not near genes chr2L 2543618 intergenic not near genes chr2L_7_2540001 chr2L_2540001 RAL-380 49 chr2L 2587826 2587848 chr2L 2587893 2587919 5 72 2.5 1.5 2.0 1.7 93 chr2L 2587826 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587919 intergenic not near genes chr2L_5_2585001 chr2L_2585001 RAL-380 50 chr2L 2618037 2618066 chr2L 2618115 2618145 11 79 4.0 5.0 4.5 2.0 108 chr2L 2618037 intergenic not near genes chr2L 2618091 intergenic not near genes chr2L 2618145 intergenic not near genes chr2L_11_2615001 chr2L_2615001 RAL-380 51 chr2L 2618367 2618382 chr2L 2618450 2618467 4 87 3.5 3.0 3.2 1.0 100 chr2L 2618367 intergenic not near genes chr2L 2618417 intergenic not near genes chr2L 2618467 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-380 52 chr2L 2625606 2625624 chr2L 2625673 2625700 7 71 2.0 3.5 2.8 1.8 94 chr2L 2625606 3` UTR CR45705 - chr2L 2625653 3` UTR CR45705 - chr2L 2625700 3` UTR CR45705 - chr2L_7_2625001 chr2L_2625001 RAL-380 53 chr2L 2661198 2661215 chr2L 2663036 2663051 I-element 5 1837 4.0 1.5 2.8 1.3 1853 chr2L 2661198 intergenic not near genes chr2L 2662124 intergenic not near genes chr2L 2663051 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-380 54 chr2L 2661217 2661235 chr2L 2663032 2663041 I-element 7 1817 2.0 1.5 1.8 2.5 1824 chr2L 2661217 intergenic not near genes chr2L 2662129 intergenic not near genes chr2L 2663041 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-380 55 chr2L 2698883 2698895 chr2L 2698969 2698981 4 86 1.5 6.0 3.8 0.8 98 chr2L 2698883 intron CG31690 + chr2L 2698932 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-380 56 chr2L 2927959 2927967 chr2L 2928045 2928053 6 86 1.0 8.0 4.5 1.1 94 chr2L 2927959 intron lilli + chr2L 2928006 intron lilli + chr2L 2928053 intron lilli + chr2L_6_2925001 chr2L_2925001 RAL-380 57 chr2L 2933303 2933326 chr2L 2935479 2935503 pogo 11 2173 3.0 5.0 4.0 2.2 2200 chr2L 2933303 intron lilli + chr2L 2934403 intron lilli + chr2L 2935503 intron lilli + chr2L_11_2930001 chr2L_2930001 RAL-380 58 chr2L 2937430 2937451 chr2L 2937507 2937528 9 77 3.0 5.0 4.0 1.8 98 chr2L 2937430 intron lilli + chr2L 2937479 intron lilli + chr2L 2937528 intron lilli + chr2L_9_2935001 chr2L_2935001 RAL-380 59 chr2L 3026218 3026236 chr2L 3026877 3026892 10 657 44.0 34.5 39.2 0.2 674 chr2L 3026218 3` UTR CG3542 + chr2L 3026555 3` UTR CG3605 - chr2L 3026892 exon CG3605 - chr2L_10_3025001 chr2L_3025001 RAL-380 60 chr2L 3026216 3026230 chr2L 3026895 3026902 6 666 42.5 29.0 35.8 0.2 686 chr2L 3026216 3` UTR CG3542 + chr2L 3026559 3` UTR CG3605 - chr2L 3026902 exon CG3605 - chr2L_6_3025001 chr2L_3025001 RAL-380 61 chr2L 3044920 3044933 chr2L 3045000 3045009 8 85 6.0 8.0 7.0 1.0 89 chr2L 3044920 intron v(2)k05816 + chr2L 3044964 intron v(2)k05816 + chr2L 3045009 intron v(2)k05816 + chr2L_8_3040001 chr2L_3040001 RAL-380 62 chr2L 3073029 3073062 chr2L 3078232 3078265 copia 11 5203 3.0 4.0 3.5 2.4 5236 chr2L 3073029 intron toc - chr2L 3075647 intron toc - chr2L 3078265 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-380 63 chr2L 3108874 3108884 chr2L 3108944 3108952 8 73 3.0 3.5 3.2 1.9 78 chr2L 3108874 intron toc - chr2L 3108913 intron toc - chr2L 3108952 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-380 64 chr2L 3108885 3108899 chr2L 3108942 3108976 6 73 3.0 2.5 2.8 1.6 91 chr2L 3108885 intron toc - chr2L 3108930 intron toc - chr2L 3108976 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-380 65 chr2L 3122670 3122699 chr2L 3122746 3122776 6 77 5.5 2.0 3.8 1.2 106 chr2L 3122670 intron toc - chr2L 3122723 intron toc - chr2L 3122776 intron toc - chr2L_6_3120001 chr2L_3120001 RAL-380 66 chr2L 3147275 3147302 chr2L 3147351 3147379 11 74 10.0 8.0 9.0 1.1 104 chr2L 3147275 3` UTR Mad - chr2L 3147327 3` UTR Mad - chr2L 3147379 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-380 67 chr2L 3186470 3186500 chr2L 3186556 3186586 4 86 2.0 0.5 1.2 1.8 116 chr2L 3186470 intron CG34393 - chr2L 3186528 intron CG34393 - chr2L 3186586 intron CG34393 - chr2L_4_3185001 chr2L_3185001 RAL-380 68 chr2L 3192210 3192242 chr2L 3192319 3192353 9 108 1.0 4.5 2.8 2.4 143 chr2L 3192210 exon CG34393 - chr2L 3192282 intron CG34393 - chr2L 3192353 intron CG34393 - chr2L_9_3190001 chr2L_3190001 RAL-380 69 chr2L 3202740 3202771 chr2L 3210169 3210200 mdg1 8 7428 3.5 2.5 3.0 2.0 7460 chr2L 3202740 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210200 intergenic CR45336 + chr2L_8_3205001 chr2L_3205001 RAL-380 70 chr2L 3221501 3221529 chr2L 3221715 3221743 11 213 4.5 3.5 4.0 2.2 242 chr2L 3221501 intergenic not near genes chr2L 3221622 intergenic not near genes chr2L 3221743 intergenic not near genes chr2L_11_3220001 chr2L_3220001 RAL-380 71 chr2L 3291239 3291270 chr2L 3291318 3291349 7 79 1.0 4.5 2.8 1.8 110 chr2L 3291239 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-380 72 chr2L 3314697 3314721 chr2L 3314774 3314784 7 74 5.5 3.5 4.5 1.3 87 chr2L 3314697 intron CG3277 + chr2L 3314740 intron CG3277 + chr2L 3314784 intron CG3277 + chr2L_7_3310001 chr2L_3310001 RAL-380 73 chr2L 3388599 3388630 chr2L 3388840 3388871 pogo 6 241 3.0 5.0 4.0 1.2 272 chr2L 3388599 intergenic CG42460 - chr2L 3388735 intergenic CG42460 - chr2L 3388871 intergenic CG42460 -,CR44791 + chr2L_6_3385001 chr2L_3385001 RAL-380 74 chr2L 3396598 3396619 chr2L 3396792 3396800 8 192 3.0 2.5 2.8 2.1 202 chr2L 3396598 intergenic not near genes chr2L 3396699 intergenic not near genes chr2L 3396800 intergenic not near genes chr2L_8_3395001 chr2L_3395001 RAL-380 75 chr2L 3428173 3428194 chr2L 3428238 3428270 5 73 0.0 3.0 1.5 2.0 97 chr2L 3428173 intergenic not near genes chr2L 3428222 intergenic not near genes chr2L 3428270 intergenic not near genes chr2L_5_3425001 chr2L_3425001 RAL-380 76 chr2L 3508356 3508369 chr2L 3508434 3508447 4 78 0.0 2.5 1.2 1.8 91 chr2L 3508356 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508447 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-380 77 chr2L 3536113 3536121 chr2L 3536200 3536206 5 87 1.5 4.0 2.8 1.3 93 chr2L 3536113 intergenic not near genes chr2L 3536160 intergenic not near genes chr2L 3536206 intergenic not near genes chr2L_5_3535001 chr2L_3535001 RAL-380 78 chr2L 3540355 3540372 chr2L 3540443 3540464 8 97 1.0 1.0 1.0 4.0 109 chr2L 3540355 intron drm + chr2L 3540410 intron drm + chr2L 3540464 intron drm + chr2L_8_3540001 chr2L_3540001 RAL-380 79 chr2L 3633468 3633498 chr2L 3633554 3633561 11 81 1.5 3.5 2.5 3.1 93 chr2L 3633468 intron for - chr2L 3633514 intron for - chr2L 3633561 intron for - chr2L_11_3630001 chr2L_3630001 RAL-380 80 chr2L 3686028 3686057 chr2L 3686116 3686145 6 88 0.0 1.5 0.8 3.3 117 chr2L 3686028 intron CG34340 + chr2L 3686086 intron CG34340 + chr2L 3686145 intron CG34340 + chr2L_6_3685001 chr2L_3685001 RAL-380 81 chr2L 3696113 3696122 chr2L 3696180 3696199 4 74 3.5 3.5 3.5 0.9 86 chr2L 3696113 intergenic CG16712 - chr2L 3696156 intergenic CG16712 - chr2L 3696199 intergenic CG16712 - chr2L_4_3695001 chr2L_3695001 RAL-380 82 chr2L 3883602 3883629 chr2L 3883755 3883782 7 152 4.0 3.5 3.8 1.5 180 chr2L 3883602 intron capu - chr2L 3883692 intron capu - chr2L 3883782 intron capu - chr2L_7_3880001 chr2L_3880001 RAL-380 83 chr2L 4017302 4017335 chr2L 4017387 4017394 8 81 3.0 1.0 2.0 2.7 92 chr2L 4017302 intergenic not near genes chr2L 4017348 intergenic not near genes chr2L 4017394 intergenic not near genes chr2L_8_4015001 chr2L_4015001 RAL-380 84 chr2L 4066040 4066063 chr2L 4068865 4068887 Juan 5 2825 6.5 3.0 4.8 0.9 2847 chr2L 4066040 intron ed + chr2L 4067464 intron ed + chr2L 4068887 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-380 85 chr2L 4150643 4150656 chr2L 4150702 4150720 7 69 1.0 2.0 1.5 2.8 77 chr2L 4150643 exon CG2955 + chr2L 4150682 exon CG2955 + chr2L 4150720 exon CG2955 + chr2L_7_4150001 chr2L_4150001 RAL-380 86 chr2L 4166380 4166400 chr2L 4166463 4166483 8 83 2.0 3.5 2.8 2.1 103 chr2L 4166380 intergenic Or24a - chr2L 4166432 intergenic Or24a - chr2L 4166483 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-380 87 chr2L 4596617 4596639 chr2L 4596837 4596839 5 213 4.5 3.5 4.0 1.0 222 chr2L 4596617 intron dp - chr2L 4596728 intron dp - chr2L 4596839 intron dp - chr2L_5_4595001 chr2L_4595001 RAL-380 88 chr2L 4601706 4601734 chr2L 4609147 4609175 mdg1 11 7440 3.5 6.5 5.0 1.8 7469 chr2L 4601706 intron dp - chr2L 4605440 intron dp - chr2L 4609175 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-380 89 chr2L 4661844 4661855 chr2L 4669424 4669433 opus 4 7580 1.0 6.5 3.8 0.8 7589 chr2L 4661844 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669433 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-380 90 chr2L 4710346 4710371 chr2L 4710429 4710454 8 79 2.0 4.0 3.0 2.0 108 chr2L 4710346 intron CG34351 + chr2L 4710400 intron CG34351 + chr2L 4710454 intron CG34351 + chr2L_8_4710001 chr2L_4710001 RAL-380 91 chr2L 4819495 4819519 chr2L 4819618 4819642 8 123 1.0 4.0 2.5 2.3 147 chr2L 4819495 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_8_4815001 chr2L_4815001 RAL-380 92 chr2L 4867722 4867728 chr2L 4867890 4867899 4 170 9.0 2.5 5.8 0.6 177 chr2L 4867722 intron pog + chr2L 4867810 intron pog + chr2L 4867899 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-380 93 chr2L 4867730 4867747 chr2L 4867886 4867892 8 157 7.5 1.5 4.5 1.5 162 chr2L 4867730 intron pog + chr2L 4867811 intron pog + chr2L 4867892 intron pog + chr2L_8_4865001 chr2L_4865001 RAL-380 94 chr2L 4869467 4869498 chr2L 4869547 4869572 6 79 2.0 8.5 5.2 1.0 105 chr2L 4869467 intron pog + chr2L 4869520 intron pog + chr2L 4869572 intron pog + chr2L_6_4865001 chr2L_4865001 RAL-380 95 chr2L 4912246 4912272 chr2L 4912320 4912348 14 74 3.5 1.5 2.5 4.0 102 chr2L 4912246 intron hoe1 - chr2L 4912297 intron hoe1 - chr2L 4912348 intron hoe1 - chr2L_14_4910001 chr2L_4910001 RAL-380 96 chr2L 4936843 4936861 chr2L 4936929 4936937 6 84 1.5 3.5 2.5 1.7 94 chr2L 4936843 intergenic hoe2 - chr2L 4936890 intergenic hoe2 - chr2L 4936937 intergenic Sgs1 +,hoe2 - chr2L_6_4935001 chr2L_4935001 RAL-380 97 chr2L 4996089 4996116 chr2L 4996166 4996193 6 77 2.0 3.0 2.5 1.7 104 chr2L 4996089 intron Rtnl1 - chr2L 4996141 intron Rtnl1 - chr2L 4996193 intron Rtnl1 - chr2L_6_4995001 chr2L_4995001 RAL-380 98 chr2L 5022424 5022454 chr2L 5022590 5022621 11 167 4.5 7.0 5.8 1.6 197 chr2L 5022424 intron vkg - chr2L 5022522 intron vkg - chr2L 5022621 intron vkg - chr2L_11_5020001 chr2L_5020001 RAL-380 99 chr2L 5120979 5121005 chr2L 5121071 5121073 7 88 3.0 7.0 5.0 1.2 94 chr2L 5120979 intron Msp300 + chr2L 5121026 intron Msp300 + chr2L 5121073 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-380 100 chr2L 5296221 5296242 chr2L 5296299 5296321 13 78 3.5 4.5 4.0 2.6 100 chr2L 5296221 intron vri + chr2L 5296271 intron vri + chr2L 5296321 intron vri + chr2L_13_5295001 chr2L_5295001 RAL-380 101 chr2L 5342768 5342795 chr2L 5345148 5345175 Doc 6 2380 4.0 0.5 2.2 1.9 2407 chr2L 5342768 intergenic not near genes chr2L 5343972 intergenic not near genes chr2L 5345175 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-380 102 chr2L 5423100 5423110 chr2L 5423176 5423188 4 78 2.0 2.5 2.2 1.2 88 chr2L 5423100 intergenic not near genes chr2L 5423144 intergenic not near genes chr2L 5423188 intergenic not near genes chr2L_4_5420001 chr2L_5420001 RAL-380 103 chr2L 5448009 5448016 chr2L 5448092 5448100 4 84 0.5 3.0 1.8 1.4 91 chr2L 5448009 intergenic not near genes chr2L 5448054 intergenic not near genes chr2L 5448100 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-380 104 chr2L 5508532 5508553 chr2L 5508607 5508629 7 76 0.0 2.0 1.0 3.5 97 chr2L 5508532 intergenic not near genes chr2L 5508580 intergenic not near genes chr2L 5508629 intergenic not near genes chr2L_7_5505001 chr2L_5505001 RAL-380 105 chr2L 5511324 5511353 chr2L 5511407 5511436 4 83 1.5 1.0 1.2 1.8 112 chr2L 5511324 intergenic not near genes chr2L 5511380 intergenic not near genes chr2L 5511436 intergenic not near genes chr2L_4_5510001 chr2L_5510001 RAL-380 106 chr2L 5649691 5649718 chr2L 5649768 5649795 12 76 0.5 1.5 1.0 6.0 104 chr2L 5649691 intron CG31646 - chr2L 5649743 intron CG31646 - chr2L 5649795 intron CG31646 - chr2L_12_5645001 chr2L_5645001 RAL-380 107 chr2L 5762449 5762477 chr2L 5762534 5762562 7 85 1.0 2.0 1.5 2.8 113 chr2L 5762449 intergenic CG11030 +,obst-E - chr2L 5762506 intergenic obst-E -,CG11030 + chr2L 5762562 3` UTR obst-E - chr2L_7_5760001 chr2L_5760001 RAL-380 108 chr2L 5813667 5813690 chr2L 5813772 5813790 10 103 5.0 6.0 5.5 1.5 123 chr2L 5813667 intergenic not near genes chr2L 5813728 intergenic not near genes chr2L 5813790 intergenic not near genes chr2L_10_5810001 chr2L_5810001 RAL-380 109 chr2L 5814697 5814713 chr2L 5814779 5814795 4 82 2.0 1.5 1.8 1.4 98 chr2L 5814697 intergenic not near genes chr2L 5814746 intergenic not near genes chr2L 5814795 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-380 110 chr2L 5827714 5827731 chr2L 5836722 5836739 roo 9 9006 5.0 2.0 3.5 2.0 9025 chr2L 5827714 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836739 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-380 111 chr2L 5827733 5827741 chr2L 5836720 5836749 roo 6 9001 3.0 2.0 2.5 1.7 9016 chr2L 5827733 intron TrissinR + chr2L 5832241 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-380 112 chr2L 5887605 5887628 chr2L 5887686 5887709 9 80 3.0 6.5 4.8 1.6 104 chr2L 5887605 3` UTR CR44577 - chr2L 5887657 3` UTR CR44577 - chr2L 5887709 3` UTR CR44577 - chr2L_9_5885001 chr2L_5885001 RAL-380 113 chr2L 5904462 5904475 chr2L 5904541 5904555 8 79 4.0 0.5 2.2 2.5 93 chr2L 5904462 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904555 intron CG9021 - chr2L_8_5900001 chr2L_5900001 RAL-380 114 chr2L 5931316 5931332 chr2L 5931428 5931444 4 112 0.5 1.5 1.0 2.0 128 chr2L 5931316 intron dsf + chr2L 5931380 intron dsf + chr2L 5931444 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-380 115 chr2L 6002441 6002463 chr2L 6002527 6002548 7 85 0.5 4.0 2.2 2.2 107 chr2L 6002441 3` UTR Tsp26A + chr2L 6002494 3` UTR Tsp26A + chr2L 6002548 3` UTR Tsp26A + chr2L_7_6000001 chr2L_6000001 RAL-380 116 chr2L 6007097 6007124 chr2L 6007171 6007200 7 76 1.5 1.5 1.5 2.8 103 chr2L 6007097 intergenic CG9098 -,Gal - chr2L 6007148 intergenic CG9098 -,Gal - chr2L 6007200 intergenic CG9098 -,Gal - chr2L_7_6005001 chr2L_6005001 RAL-380 117 chr2L 6021546 6021554 chr2L 6021699 6021713 4 162 1.5 0.0 0.8 2.2 167 chr2L 6021546 exon CG13996 + chr2L 6021630 exon CG13996 + chr2L 6021713 3` UTR CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-380 118 chr2L 6050440 6050464 chr2L 6050544 6050568 7 104 3.0 3.0 3.0 1.8 128 chr2L 6050440 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050568 intergenic CG12393 +,CG9135 + chr2L_7_6050001 chr2L_6050001 RAL-380 119 chr2L 6086219 6086246 chr2L 6086328 6086355 6 110 1.5 2.5 2.0 2.0 136 chr2L 6086219 intron Kr-h1 + chr2L 6086287 intron Kr-h1 + chr2L 6086355 intron Kr-h1 + chr2L_6_6085001 chr2L_6085001 RAL-380 120 chr2L 6136577 6136582 chr2L 6136673 6136679 4 96 0.0 4.0 2.0 1.3 102 chr2L 6136577 intergenic not near genes chr2L 6136628 intergenic not near genes chr2L 6136679 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-380 121 chr2L 6185446 6185469 chr2L 6185524 6185544 4 76 2.5 3.5 3.0 1.0 98 chr2L 6185446 intron CG34380 + chr2L 6185495 intron CG34380 + chr2L 6185544 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-380 122 chr2L 6231660 6231680 chr2L 6231740 6231743 6 78 7.0 0.5 3.8 1.2 83 chr2L 6231660 intergenic CR44823 + chr2L 6231702 intergenic CR44823 + chr2L 6231743 intergenic CR44823 + chr2L_6_6230001 chr2L_6230001 RAL-380 123 chr2L 6283968 6283979 chr2L 6284079 6284087 5 110 0.5 2.5 1.5 2.0 119 chr2L 6283968 intron Ddr + chr2L 6284028 intron Ddr + chr2L 6284087 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-380 124 chr2L 6363162 6363179 chr2L 6366083 6366090 Burdock 4 2918 3.5 3.0 3.2 1.0 2928 chr2L 6363162 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366090 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-380 125 chr2L 6426854 6426888 chr2L 6445114 6445148 roo 14 18260 3.5 7.5 5.5 2.2 18294 chr2L 6426854 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_14_6435001 chr2L_6435001 RAL-380 126 chr2L 6463564 6463584 chr2L 6463648 6463675 6 88 8.0 4.5 6.2 0.8 111 chr2L 6463564 exon CG16947 - chr2L 6463620 exon CG16947 - chr2L 6463675 exon CG16947 - chr2L_6_6460001 chr2L_6460001 RAL-380 127 chr2L 6544375 6544393 chr2L 6544465 6544484 5 91 3.0 5.5 4.2 1.0 109 chr2L 6544375 intron eya - chr2L 6544430 intron eya - chr2L 6544484 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-380 128 chr2L 6640911 6640939 chr2L 6641006 6641033 6 94 5.0 6.0 5.5 0.9 122 chr2L 6640911 exon CG31635 - chr2L 6640972 intron CG31635 - chr2L 6641033 intron CG31635 - chr2L_6_6640001 chr2L_6640001 RAL-380 129 chr2L 6711058 6711072 chr2L 6711233 6711239 4 173 4.5 2.5 3.5 0.9 181 chr2L 6711058 intergenic AkhR - chr2L 6711148 intergenic AkhR - chr2L 6711239 intergenic AkhR - chr2L_4_6710001 chr2L_6710001 RAL-380 130 chr2L 6850381 6850414 chr2L 6850461 6850497 9 79 1.0 2.5 1.8 3.2 116 chr2L 6850381 intergenic not near genes chr2L 6850439 intergenic not near genes chr2L 6850497 intergenic not near genes chr2L_9_6850001 chr2L_6850001 RAL-380 131 chr2L 6875572 6875587 chr2L 6875785 6875800 8 212 8.0 2.5 5.2 1.3 228 chr2L 6875572 intron Nlg2 + chr2L 6875686 intron Nlg2 + chr2L 6875800 intron Nlg2 + chr2L_8_6875001 chr2L_6875001 RAL-380 132 chr2L 6875588 6875599 chr2L 6875783 6875807 6 201 6.5 2.5 4.5 1.1 219 chr2L 6875588 intron Nlg2 + chr2L 6875698 intron Nlg2 + chr2L 6875807 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-380 133 chr2L 6969277 6969307 chr2L 6969356 6969386 15 79 4.5 5.0 4.8 2.6 109 chr2L 6969277 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969386 3` UTR snRNP-U1-70K - chr2L_15_6965001 chr2L_6965001 RAL-380 134 chr2L 7005232 7005250 chr2L 7005328 7005346 6 96 4.0 3.5 3.8 1.2 114 chr2L 7005232 intron uif - chr2L 7005289 intron uif - chr2L 7005346 intron uif - chr2L_6_7005001 chr2L_7005001 RAL-380 135 chr2L 7115000 7115031 chr2L 7115129 7115160 10 128 3.5 1.5 2.5 2.9 160 chr2L 7115000 intron Pvf3 - chr2L 7115080 intron Pvf3 - chr2L 7115160 intron Pvf3 - chr2L_10_7115001 chr2L_7115001 RAL-380 136 chr2L 7201449 7201480 chr2L 7201576 7201607 14 123 3.0 4.0 3.5 3.1 158 chr2L 7201449 intron CG4502 - chr2L 7201528 intron CG4502 - chr2L 7201607 intron CG4502 - chr2L_14_7200001 chr2L_7200001 RAL-380 137 chr2L 7343326 7343338 chr2L 7350440 7350453 roo 7 7114 4.5 4.0 4.2 1.3 7127 chr2L 7343326 intron Wnt6 + chr2L 7346890 intron Wnt6 + chr2L 7350453 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-380 138 chr2L 7460724 7460756 chr2L 7460821 7460853 8 92 4.5 4.0 4.2 1.5 129 chr2L 7460724 intron Gr28b - chr2L 7460788 intron Gr28b - chr2L 7460853 intron Gr28b - chr2L_8_7460001 chr2L_7460001 RAL-380 139 chr2L 7462259 7462287 chr2L 7462474 7462500 12 215 4.0 3.5 3.8 2.5 241 chr2L 7462259 intergenic Gr28b - chr2L 7462380 intergenic Gr28b - chr2L 7462500 intergenic Gr28b - chr2L_12_7460001 chr2L_7460001 RAL-380 140 chr2L 7493680 7493702 chr2L 7493891 7493912 9 210 2.5 2.0 2.2 2.8 232 chr2L 7493680 intron Ziz - chr2L 7493796 intron Ziz - chr2L 7493912 intron Ziz - chr2L_9_7490001 chr2L_7490001 RAL-380 141 chr2L 7555218 7555234 chr2L 7555295 7555311 6 77 0.5 4.5 2.5 1.7 93 chr2L 7555218 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555311 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-380 142 chr2L 7576918 7576936 chr2L 7577018 7577036 5 99 3.0 4.5 3.8 1.0 118 chr2L 7576918 intron RapGAP1 - chr2L 7576977 intron RapGAP1 - chr2L 7577036 intron RapGAP1 - chr2L_5_7575001 chr2L_7575001 RAL-380 143 chr2L 7609532 7609750 chr2L 7609627 7609827 10 84 1.5 0.5 1.0 5.0 295 chr2L 7609532 intron CG6739 + chr2L 7609680 intron CG6739 + chr2L 7609827 intron CG6739 + chr2L_10_7605001 chr2L_7605001 RAL-380 144 chr2L 7658515 7658532 chr2L 7658592 7658608 4 77 6.5 3.0 4.8 0.7 93 chr2L 7658515 intron Slob - chr2L 7658562 intron Slob - chr2L 7658608 intron Slob - chr2L_4_7655001 chr2L_7655001 RAL-380 145 chr2L 7664047 7664060 chr2L 7664144 7664157 6 95 3.5 0.0 1.8 2.1 110 chr2L 7664047 intron Slob - chr2L 7664102 intron Slob - chr2L 7664157 intron Slob - chr2L_6_7660001 chr2L_7660001 RAL-380 146 chr2L 7845291 7845307 chr2L 7845394 7845409 6 102 4.0 1.5 2.8 1.6 118 chr2L 7845291 3` UTR CG14535 - chr2L 7845350 3` UTR CG14535 - chr2L 7845409 3` UTR CG14535 - chr2L_6_7845001 chr2L_7845001 RAL-380 147 chr2L 7867575 7867597 chr2L 7867669 7867691 9 92 4.0 3.5 3.8 1.9 116 chr2L 7867575 intron Proc - chr2L 7867633 intron Proc - chr2L 7867691 intron Proc - chr2L_9_7865001 chr2L_7865001 RAL-380 148 chr2L 7922746 7922770 chr2L 7922826 7922851 9 79 4.5 4.0 4.2 1.7 105 chr2L 7922746 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922851 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-380 149 chr2L 7959040 7959062 chr2L 7960451 7960473 pogo 8 1411 6.5 0.0 3.2 1.9 1433 chr2L 7959040 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960473 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-380 150 chr2L 8013619 8013631 chr2L 8018824 8018834 copia 4 5204 2.5 0.0 1.2 1.8 5215 chr2L 8013619 intron Tg + chr2L 8016226 intron Tg + chr2L 8018834 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-380 151 chr2L 8018819 8018836 chr2L 8023603 8023620 Doc 4 4784 0.0 2.0 1.0 2.0 4801 chr2L 8018819 intron Tg + chr2L 8021220 intron Tg + chr2L 8023620 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-380 152 chr2L 8044096 8044129 chr2L 8044175 8044186 11 76 1.5 2.5 2.0 3.7 90 chr2L 8044096 intron CG7466 + chr2L 8044141 intron CG7466 + chr2L 8044186 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-380 153 chr2L 8171275 8171291 chr2L 8171355 8171372 8 81 0.5 2.5 1.5 3.2 97 chr2L 8171275 intron Piezo + chr2L 8171324 intron Piezo + chr2L 8171372 intron Piezo + chr2L_8_8170001 chr2L_8170001 RAL-380 154 chr2L 8286305 8286326 chr2L 8286391 8286411 4 85 3.0 7.5 5.2 0.6 106 chr2L 8286305 intron Btk29A - chr2L 8286358 intron Btk29A - chr2L 8286411 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-380 155 chr2L 8350242 8350259 chr2L 8350367 8350387 4 128 1.5 2.5 2.0 1.3 145 chr2L 8350242 3` UTR CG7778 + chr2L 8350314 3` UTR CG7778 + chr2L 8350387 3` UTR CG7778 + chr2L_4_8350001 chr2L_8350001 RAL-380 156 chr2L 8418145 8418177 chr2L 8418243 8418259 14 96 3.5 4.5 4.0 2.8 114 chr2L 8418145 intron Akap200 + chr2L 8418202 intron Akap200 + chr2L 8418259 intron Akap200 + chr2L_14_8415001 chr2L_8415001 RAL-380 157 chr2L 8452426 8452454 chr2L 8461597 8461625 roo 14 9169 2.5 3.5 3.0 3.5 9199 chr2L 8452426 intron fu12 - chr2L 8457026 intron fu12 - chr2L 8461625 intron fu12 - chr2L_14_8455001 chr2L_8455001 RAL-380 158 chr2L 8605962 8605997 chr2L 8606038 8606072 10 74 3.5 2.0 2.8 2.6 110 chr2L 8605962 intron Sema-1a + chr2L 8606017 intron Sema-1a + chr2L 8606072 intron Sema-1a + chr2L_10_8605001 chr2L_8605001 RAL-380 159 chr2L 8686905 8686919 chr2L 8690911 8690931 6 4007 27.0 21.5 24.2 0.2 4026 chr2L 8686905 exon Trs23 + chr2L 8688918 intron Hnf4 - chr2L 8690931 intron Hnf4 - chr2L_6_8685001 chr2L_8685001 RAL-380 160 chr2L 8695829 8695852 chr2L 8695950 8695971 7 121 3.5 6.0 4.8 1.2 142 chr2L 8695829 intron Hnf4 - chr2L 8695900 intron Hnf4 - chr2L 8695971 intron Hnf4 - chr2L_7_8695001 chr2L_8695001 RAL-380 161 chr2L 8723121 8723148 chr2L 8731491 8731525 Tirant 9 8376 6.0 2.5 4.2 1.7 8404 chr2L 8723121 intron raw - chr2L 8727323 intron raw - chr2L 8731525 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-380 162 chr2L 8892027 8892052 chr2L 8892105 8892131 8 76 3.5 4.5 4.0 1.6 104 chr2L 8892027 3` UTR CG42713 + chr2L 8892079 3` UTR CG42713 + chr2L 8892131 3` UTR CG42713 + chr2L_8_8890001 chr2L_8890001 RAL-380 163 chr2L 9000280 9000310 chr2L 9007790 9007812 roo 20 7509 5.0 4.5 4.8 3.4 7532 chr2L 9000280 intergenic Try29F + chr2L 9004046 intergenic not near genes chr2L 9007812 intergenic not near genes chr2L_20_9000001 chr2L_9000001 RAL-380 164 chr2L 9040897 9040911 chr2L 9040971 9040987 5 75 2.0 2.5 2.2 1.6 90 chr2L 9040897 intergenic not near genes chr2L 9040942 intergenic not near genes chr2L 9040987 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-380 165 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133320 12.5 12.0 12.2 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-380 166 chr2L 9095574 9095605 chr2L 9095661 9095692 10 84 1.5 5.0 3.2 2.4 118 chr2L 9095574 intergenic not near genes chr2L 9095633 intergenic not near genes chr2L 9095692 intergenic not near genes chr2L_10_9095001 chr2L_9095001 RAL-380 167 chr2L 9199037 9199054 chr2L 9199118 9199135 7 80 2.0 1.0 1.5 2.8 98 chr2L 9199037 intron tai + chr2L 9199086 intron tai + chr2L 9199135 intron tai + chr2L_7_9195001 chr2L_9195001 RAL-380 168 chr2L 9259233 9259246 chr2L 9259326 9259339 4 93 3.0 5.5 4.2 0.8 106 chr2L 9259233 intron Ggamma30A + chr2L 9259286 intron Ggamma30A + chr2L 9259339 intron Ggamma30A + chr2L_4_9255001 chr2L_9255001 RAL-380 169 chr2L 9264343 9264383 chr2L 9264443 9264482 11 99 3.5 4.5 4.0 2.2 139 chr2L 9264343 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264482 intron Ggamma30A + chr2L_11_9260001 chr2L_9260001 RAL-380 170 chr2L 9290784 9290797 chr2L 9290861 9290874 10 77 0.5 1.5 1.0 5.0 90 chr2L 9290784 intron Ggamma30A + chr2L 9290829 intron Ggamma30A + chr2L 9290874 intron Ggamma30A + chr2L_10_9290001 chr2L_9290001 RAL-380 171 chr2L 9303363 9303543 chr2L 9303466 9303623 8 81 1.5 7.5 4.5 1.5 260 chr2L 9303363 intergenic not near genes chr2L 9303493 intergenic not near genes chr2L 9303623 intergenic not near genes chr2L_8_9300001 chr2L_9300001 RAL-380 172 chr2L 9317543 9317558 chr2L 9317820 9317835 9 277 0.0 5.5 2.8 2.4 292 chr2L 9317543 intergenic not near genes chr2L 9317689 intergenic not near genes chr2L 9317835 intergenic not near genes chr2L_9_9315001 chr2L_9315001 RAL-380 173 chr2L 9321734 9321760 chr2L 9321809 9321836 5 76 0.5 4.5 2.5 1.4 102 chr2L 9321734 intergenic not near genes chr2L 9321785 intergenic not near genes chr2L 9321836 intergenic not near genes chr2L_5_9320001 chr2L_9320001 RAL-380 174 chr2L 9393497 9393527 chr2L 9396464 9396494 jockey 7 2964 2.5 3.5 3.0 1.8 2997 chr2L 9393497 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396494 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-380 175 chr2L 9454976 9455005 chr2L 9455078 9455107 11 102 3.5 0.5 2.0 3.7 131 chr2L 9454976 intron numb + chr2L 9455042 intron numb + chr2L 9455107 intron numb + chr2L_11_9455001 chr2L_9455001 RAL-380 176 chr2L 9474791 9474802 chr2L 9474885 9474895 5 94 1.5 1.5 1.5 2.0 104 chr2L 9474791 intergenic not near genes chr2L 9474843 intergenic not near genes chr2L 9474895 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-380 177 chr2L 9490523 9490550 chr2L 9490602 9490630 8 78 3.5 4.0 3.8 1.7 107 chr2L 9490523 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490630 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-380 178 chr2L 9506429 9506454 chr2L 9506577 9506604 10 150 3.5 3.5 3.5 2.2 175 chr2L 9506429 intron CG33298 + chr2L 9506516 intron CG33298 + chr2L 9506604 intron CG33298 + chr2L_10_9505001 chr2L_9505001 RAL-380 179 chr2L 9508734 9508763 chr2L 9508851 9508858 8 113 4.5 2.5 3.5 1.8 124 chr2L 9508734 intron CG33298 + chr2L 9508796 intron CG33298 + chr2L 9508858 intron CG33298 + chr2L_8_9505001 chr2L_9505001 RAL-380 180 chr2L 9526460 9526465 chr2L 9526582 9526583 4 122 2.0 2.0 2.0 1.3 123 chr2L 9526460 intron Oatp30B + chr2L 9526522 intron Oatp30B + chr2L 9526583 intron Oatp30B + chr2L_4_9525001 chr2L_9525001 RAL-380 181 chr2L 9564456 9564489 chr2L 9564579 9564612 6 118 3.5 2.0 2.8 1.6 156 chr2L 9564456 intron jp - chr2L 9564534 intron jp - chr2L 9564612 intron jp - chr2L_6_9560001 chr2L_9560001 RAL-380 182 chr2L 9619497 9619516 chr2L 9619834 9619853 5 337 2.5 2.5 2.5 1.4 356 chr2L 9619497 intron GlcAT-S + chr2L 9619675 intron GlcAT-S + chr2L 9619853 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-380 183 chr2L 9686347 9686369 chr2L 9686431 9686451 13 82 8.0 1.5 4.8 2.2 104 chr2L 9686347 intron Pka-C1 - chr2L 9686399 intron Pka-C1 - chr2L 9686451 intron Pka-C1 - chr2L_13_9685001 chr2L_9685001 RAL-380 184 chr2L 9873133 9873161 chr2L 9873408 9873437 11 275 7.0 6.0 6.5 1.5 304 chr2L 9873133 intron nAChRalpha6 - chr2L 9873285 intron nAChRalpha6 - chr2L 9873437 intron nAChRalpha6 - chr2L_11_9870001 chr2L_9870001 RAL-380 185 chr2L 9892516 9892534 chr2L 9892591 9892610 4 76 1.5 3.5 2.5 1.1 94 chr2L 9892516 intron mtDNA-helicase - chr2L 9892563 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-380 186 chr2L 9973724 9973758 chr2L 9980843 9980875 HMS-Beagle 21 7117 5.5 2.0 3.8 4.4 7151 chr2L 9973724 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_21_9975001 chr2L_9975001 RAL-380 187 chr2L 9986358 9986384 chr2L 9986452 9986479 8 93 1.0 4.0 2.5 2.3 121 chr2L 9986358 intron bib + chr2L 9986418 intron bib + chr2L 9986479 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-380 188 chr2L 10051727 10051742 chr2L 10051811 10051826 10 84 8.0 5.5 6.8 1.3 99 chr2L 10051727 5` UTR CR44874 + chr2L 10051776 5` UTR CR44874 + chr2L 10051826 5` UTR CR44874 + chr2L_10_10050001 chr2L_10050001 RAL-380 189 chr2L 10051743 10051752 chr2L 10051809 10051820 6 77 6.0 5.5 5.8 0.9 77 chr2L 10051743 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051820 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-380 190 chr2L 10054333 10054350 chr2L 10057060 10057077 7 2730 27.0 34.0 30.5 0.2 2744 chr2L 10054333 5` UTR Cpr31A + chr2L 10055705 exon Cpr31A + chr2L 10057077 5` UTR Pen + chr2L_7_10055001 chr2L_10055001 RAL-380 191 chr2L 10078128 10078150 chr2L 10078286 10078308 9 156 2.0 5.5 3.8 1.9 180 chr2L 10078128 intron CG44153 - chr2L 10078218 intron CG44153 - chr2L 10078308 intron CG44153 - chr2L_9_10075001 chr2L_10075001 RAL-380 192 chr2L 10078152 10078156 chr2L 10078285 10078314 4 152 2.0 5.5 3.8 0.8 162 chr2L 10078152 intron CG44153 - chr2L 10078233 intron CG44153 - chr2L 10078314 intron CG44153 - chr2L_4_10075001 chr2L_10075001 RAL-380 193 chr2L 10156321 10156355 chr2L 10163791 10163822 blood 5 7468 4.0 2.0 3.0 1.2 7501 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-380 194 chr2L 10175897 10175931 chr2L 10175994 10176028 19 95 1.5 8.0 4.8 3.3 131 chr2L 10175897 intron CG44153 - chr2L 10175962 intron CG44153 - chr2L 10176028 intron CG44153 - chr2L_19_10175001 chr2L_10175001 RAL-380 195 chr2L 10184411 10184439 chr2L 10184502 10184524 7 89 3.5 5.5 4.5 1.3 113 chr2L 10184411 intron Sur - chr2L 10184468 intron Sur - chr2L 10184524 intron Sur - chr2L_7_10180001 chr2L_10180001 RAL-380 196 chr2L 10204502 10204533 chr2L 10204585 10204615 7 83 0.5 1.5 1.0 3.5 113 chr2L 10204502 intergenic CG34159 -,CG5734 - chr2L 10204558 intergenic CG5734 -,CG34159 - chr2L 10204615 intergenic CG5734 -,CG34159 - chr2L_7_10200001 chr2L_10200001 RAL-380 197 chr2L 10407752 10407770 chr2L 10407833 10407851 5 81 0.5 1.5 1.0 2.5 99 chr2L 10407752 intron Ir31a + chr2L 10407802 intron Ir31a + chr2L 10407851 exon Ir31a + chr2L_5_10405001 chr2L_10405001 RAL-380 198 chr2L 10456324 10456342 chr2L 10456423 10456440 5 99 2.5 3.0 2.8 1.3 116 chr2L 10456324 intron CG5322 - chr2L 10456382 intron CG5322 - chr2L 10456440 intron CG5322 - chr2L_5_10455001 chr2L_10455001 RAL-380 199 chr2L 10474388 10474410 chr2L 10474468 10474491 5 78 5.0 2.5 3.8 1.0 103 chr2L 10474388 intergenic RluA-1 - chr2L 10474440 intergenic RluA-1 - chr2L 10474491 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-380 200 chr2L 10480313 10480334 chr2L 10480391 10480412 8 78 0.5 0.0 0.2 6.7 99 chr2L 10480313 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480412 intron RluA-2 + chr2L_8_10480001 chr2L_10480001 RAL-380 201 chr2L 10495309 10495463 chr2L 10495386 10495549 11 82 0.0 0.0 0.0 11.0 240 chr2L 10495309 intron Myo31DF - chr2L 10495429 intron Myo31DF - chr2L 10495549 intron Myo31DF - chr2L_11_10495001 chr2L_10495001 RAL-380 202 chr2L 10515359 10515391 chr2L 10515452 10515477 7 92 4.0 2.5 3.2 1.7 118 chr2L 10515359 intron,intron CG45083 -,Fatp - chr2L 10515418 intron,intron CG45083 -,Fatp - chr2L 10515477 intron,intron CG45083 -,Fatp - chr2L_7_10515001 chr2L_10515001 RAL-380 203 chr2L 10640642 10640670 chr2L 10640731 10640757 13 88 2.5 4.5 3.5 2.9 115 chr2L 10640642 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640757 exon CG31872 + chr2L_13_10640001 chr2L_10640001 RAL-380 204 chr2L 10648049 10648064 chr2L 10648141 10648155 6 95 2.0 9.5 5.8 0.9 106 chr2L 10648049 exon CG17097 + chr2L 10648102 exon CG17097 + chr2L 10648155 exon CG17097 + chr2L_6_10645001 chr2L_10645001 RAL-380 205 chr2L 10704920 10704933 chr2L 10705015 10705024 8 94 3.5 1.5 2.5 2.3 104 chr2L 10704920 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705024 intron Lip2 - chr2L_8_10700001 chr2L_10700001 RAL-380 206 chr2L 10705458 10705468 chr2L 10705532 10705534 4 75 4.5 6.0 5.2 0.6 76 chr2L 10705458 exon Lip2 - chr2L 10705496 exon Lip2 - chr2L 10705534 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-380 207 chr2L 10705474 10705481 chr2L 10705531 10705563 8 79 2.0 6.0 4.0 1.6 89 chr2L 10705474 exon Lip2 - chr2L 10705518 intron Lip2 - chr2L 10705563 intron Lip2 - chr2L_8_10705001 chr2L_10705001 RAL-380 208 chr2L 10911597 10911612 chr2L 10911675 10911692 5 80 3.5 4.5 4.0 1.0 95 chr2L 10911597 intergenic not near genes chr2L 10911644 intergenic not near genes chr2L 10911692 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-380 209 chr2L 10946948 10946973 chr2L 10956163 10956187 roo 10 9215 2.0 6.0 4.0 2.0 9239 chr2L 10946948 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956187 intron dpr2 - chr2L_10_10950001 chr2L_10950001 RAL-380 210 chr2L 11183783 11183811 chr2L 11183879 11183907 10 95 1.5 3.5 2.5 2.9 124 chr2L 11183783 intron Ca-beta - chr2L 11183845 intron Ca-beta - chr2L 11183907 intron Ca-beta - chr2L_10_11180001 chr2L_11180001 RAL-380 211 chr2L 11193583 11193596 chr2L 11193677 11193688 4 93 0.0 4.0 2.0 1.3 105 chr2L 11193583 intron Ca-beta - chr2L 11193636 intron Ca-beta - chr2L 11193688 intron Ca-beta - chr2L_4_11190001 chr2L_11190001 RAL-380 212 chr2L 11224056 11224090 chr2L 11224166 11224201 12 110 1.5 2.5 2.0 4.0 145 chr2L 11224056 intron ab + chr2L 11224128 intron ab + chr2L 11224201 intron ab + chr2L_12_11220001 chr2L_11220001 RAL-380 213 chr2L 11237640 11237672 chr2L 11237736 11237768 4 96 2.0 2.5 2.2 1.2 128 chr2L 11237640 intron ab + chr2L 11237704 intron ab + chr2L 11237768 intron ab + chr2L_4_11235001 chr2L_11235001 RAL-380 214 chr2L 11292374 11292398 chr2L 11292456 11292474 10 81 5.5 2.0 3.8 2.1 100 chr2L 11292374 intergenic not near genes chr2L 11292424 intergenic not near genes chr2L 11292474 intergenic not near genes chr2L_10_11290001 chr2L_11290001 RAL-380 215 chr2L 11298826 11298853 chr2L 11298902 11298930 7 77 1.0 1.5 1.2 3.2 104 chr2L 11298826 intergenic not near genes chr2L 11298878 intergenic not near genes chr2L 11298930 intergenic not near genes chr2L_7_11295001 chr2L_11295001 RAL-380 216 chr2L 11309004 11309036 chr2L 11309112 11309144 5 107 4.0 0.0 2.0 1.7 140 chr2L 11309004 intergenic not near genes chr2L 11309074 intergenic not near genes chr2L 11309144 intergenic not near genes chr2L_5_11305001 chr2L_11305001 RAL-380 217 chr2L 11330320 11330349 chr2L 11330528 11330557 12 205 2.5 4.5 3.5 2.7 237 chr2L 11330320 intergenic not near genes chr2L 11330438 intergenic not near genes chr2L 11330557 intergenic not near genes chr2L_12_11330001 chr2L_11330001 RAL-380 218 chr2L 11357989 11358007 chr2L 11358067 11358084 5 77 1.0 2.0 1.5 2.0 95 chr2L 11357989 intergenic not near genes chr2L 11358036 intergenic not near genes chr2L 11358084 intergenic not near genes chr2L_5_11355001 chr2L_11355001 RAL-380 219 chr2L 11380610 11380635 chr2L 11380687 11380711 5 75 2.5 1.5 2.0 1.7 101 chr2L 11380610 intergenic not near genes chr2L 11380660 intergenic not near genes chr2L 11380711 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-380 220 chr2L 11418659 11418687 chr2L 11418738 11418766 9 78 0.5 5.0 2.8 2.4 107 chr2L 11418659 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418766 intergenic not near genes chr2L_9_11415001 chr2L_11415001 RAL-380 221 chr2L 11450145 11450152 chr2L 11450213 11450227 5 74 1.0 5.0 3.0 1.2 82 chr2L 11450145 intergenic not near genes chr2L 11450186 intergenic not near genes chr2L 11450227 intergenic not near genes chr2L_5_11450001 chr2L_11450001 RAL-380 222 chr2L 11455178 11455205 chr2L 11455246 11455266 8 74 1.5 4.0 2.8 2.1 88 chr2L 11455178 intergenic not near genes chr2L 11455222 intergenic not near genes chr2L 11455266 intergenic not near genes chr2L_8_11455001 chr2L_11455001 RAL-380 223 chr2L 11521929 11521938 chr2L 11522006 11522015 5 79 5.5 1.5 3.5 1.1 86 chr2L 11521929 exon CG43153 - chr2L 11521972 exon CG43153 - chr2L 11522015 exon CG43153 - chr2L_5_11520001 chr2L_11520001 RAL-380 224 chr2L 11540599 11540609 chr2L 11548001 11548010 Tabor 4 7402 1.5 6.5 4.0 0.8 7411 chr2L 11540599 intergenic not near genes chr2L 11544304 intergenic not near genes chr2L 11548010 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-380 225 chr2L 11563640 11563666 chr2L 11568844 11568870 copia 8 5204 3.0 3.0 3.0 2.0 5230 chr2L 11563640 intergenic not near genes chr2L 11566255 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-380 226 chr2L 11588841 11588871 chr2L 11588920 11588934 7 75 4.5 2.5 3.5 1.6 93 chr2L 11588841 intron,5` UTR kek2 +,CR44496 + chr2L 11588888 intron,5` UTR kek2 +,CR44496 + chr2L 11588934 intron,5` UTR kek2 +,CR44496 + chr2L_7_11585001 chr2L_11585001 RAL-380 227 chr2L 11713506 11713537 chr2L 11720973 11721004 blood 7 7467 2.5 3.0 2.8 1.8 7498 chr2L 11713506 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-380 228 chr2L 11770601 11770632 chr2L 11770688 11770715 10 86 5.0 0.5 2.8 2.6 114 chr2L 11770601 intergenic not near genes chr2L 11770658 intergenic not near genes chr2L 11770715 intergenic not near genes chr2L_10_11770001 chr2L_11770001 RAL-380 229 chr2L 11856186 11856215 chr2L 11856357 11856364 5 167 4.5 1.0 2.8 1.3 178 chr2L 11856186 intron Pde1c - chr2L 11856275 intron Pde1c - chr2L 11856364 intron Pde1c - chr2L_5_11855001 chr2L_11855001 RAL-380 230 chr2L 11953740 11953761 chr2L 11953819 11953841 10 78 1.5 3.5 2.5 2.9 101 chr2L 11953740 3` UTR CR43314 - chr2L 11953790 3` UTR CR43314 - chr2L 11953841 3` UTR CR43314 - chr2L_10_11950001 chr2L_11950001 RAL-380 231 chr2L 12031394 12031413 chr2L 12031474 12031491 5 80 2.0 1.5 1.8 1.8 97 chr2L 12031394 intron dmGlut + chr2L 12031442 intron dmGlut + chr2L 12031491 intron dmGlut + chr2L_5_12030001 chr2L_12030001 RAL-380 232 chr2L 12067334 12067363 chr2L 12074384 12074415 297 6 7052 2.0 3.0 2.5 1.7 7081 chr2L 12067334 intergenic not near genes chr2L 12070874 intergenic not near genes chr2L 12074415 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-380 233 chr2L 12234033 12234063 chr2L 12234128 12234157 6 95 4.5 4.5 4.5 1.1 124 chr2L 12234033 intron aret + chr2L 12234095 intron aret + chr2L 12234157 intron aret + chr2L_6_12230001 chr2L_12230001 RAL-380 234 chr2L 12272173 12272196 chr2L 12272249 12272272 8 75 2.0 5.5 3.8 1.7 99 chr2L 12272173 intron aret + chr2L 12272222 intron aret + chr2L 12272272 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-380 235 chr2L 12309362 12309367 chr2L 12309438 12309444 4 76 8.5 5.5 7.0 0.5 82 chr2L 12309362 intron aret + chr2L 12309403 intron aret + chr2L 12309444 intron aret + chr2L_4_12305001 chr2L_12305001 RAL-380 236 chr2L 12309370 12309388 chr2L 12309433 12309463 13 71 5.0 4.5 4.8 2.2 93 chr2L 12309370 intron aret + chr2L 12309416 intron aret + chr2L 12309463 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-380 237 chr2L 12411016 12411035 chr2L 12411095 12411113 5 78 3.0 1.5 2.2 1.6 97 chr2L 12411016 intron vir-1 - chr2L 12411064 intron vir-1 - chr2L 12411113 intron vir-1 - chr2L_5_12410001 chr2L_12410001 RAL-380 238 chr2L 12454145 12454152 chr2L 12454219 12454225 6 78 5.0 11.0 8.0 0.7 80 chr2L 12454145 intergenic not near genes chr2L 12454185 intergenic not near genes chr2L 12454225 intergenic not near genes chr2L_6_12450001 chr2L_12450001 RAL-380 239 chr2L 12480541 12480560 chr2L 12480617 12480637 6 77 3.0 2.5 2.8 1.6 96 chr2L 12480541 intron bun - chr2L 12480589 intron bun - chr2L 12480637 intron bun - chr2L_6_12480001 chr2L_12480001 RAL-380 240 chr2L 12487890 12487918 chr2L 12487971 12487999 12 78 5.0 10.0 7.5 1.4 109 chr2L 12487890 intron bun - chr2L 12487944 intron bun - chr2L 12487999 intron bun - chr2L_12_12485001 chr2L_12485001 RAL-380 241 chr2L 12529246 12529436 chr2L 12529378 12529512 7 99 2.5 2.5 2.5 2.0 266 chr2L 12529246 intron bun - chr2L 12529379 intron bun - chr2L 12529512 intron bun - chr2L_7_12525001 chr2L_12525001 RAL-380 242 chr2L 12558319 12558353 chr2L 12565448 12565460 HMS-Beagle 16 7127 2.5 3.0 2.8 4.2 7141 chr2L 12558319 intergenic not near genes chr2L 12561890 intergenic not near genes chr2L 12565460 intergenic not near genes chr2L_16_12560001 chr2L_12560001 RAL-380 243 chr2L 12617136 12617160 chr2L 12617220 12617244 5 84 1.0 0.5 0.8 2.8 108 chr2L 12617136 intron,intron nub +,Ref2 - chr2L 12617190 intron,intron nub +,Ref2 - chr2L 12617244 intron,intron nub +,Ref2 - chr2L_5_12615001 chr2L_12615001 RAL-380 244 chr2L 12682875 12682904 chr2L 12682954 12682983 10 74 4.0 4.5 4.2 1.9 108 chr2L 12682875 intron pdm2 + chr2L 12682929 intron pdm2 + chr2L 12682983 intron pdm2 + chr2L_10_12680001 chr2L_12680001 RAL-380 245 chr2L 12731066 12731086 chr2L 12735829 12735853 F-element 6 4766 2.0 5.0 3.5 1.3 4787 chr2L 12731066 intron MRP + chr2L 12733460 intron MRP + chr2L 12735853 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-380 246 chr2L 12739174 12739202 chr2L 12743955 12743983 Doc 12 4780 5.0 3.5 4.2 2.3 4809 chr2L 12739174 exon MRP + chr2L 12741578 intron MRP + chr2L 12743983 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-380 247 chr2L 12751311 12751340 chr2L 12751394 12751423 7 82 2.0 3.5 2.8 1.8 112 chr2L 12751311 intergenic not near genes chr2L 12751367 intergenic not near genes chr2L 12751423 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-380 248 chr2L 12775377 12775406 chr2L 12775454 12775483 8 76 1.0 1.0 1.0 4.0 106 chr2L 12775377 intergenic not near genes chr2L 12775430 intergenic not near genes chr2L 12775483 intergenic not near genes chr2L_8_12775001 chr2L_12775001 RAL-380 249 chr2L 12791606 12791628 chr2L 12795281 12795302 F-element 6 3675 4.0 3.0 3.5 1.3 3696 chr2L 12791606 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795302 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-380 250 chr2L 12861701 12861724 chr2L 12863168 12863180 hobo 13 1465 6.5 4.5 5.5 2.0 1479 chr2L 12861701 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-380 251 chr2L 12933850 12933883 chr2L 12941317 12941349 blood 17 7465 5.5 5.5 5.5 2.6 7499 chr2L 12933850 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_17_12935001 chr2L_12935001 RAL-380 252 chr2L 12963800 12963815 chr2L 12963902 12963915 4 100 6.5 4.0 5.2 0.6 115 chr2L 12963800 intergenic not near genes chr2L 12963858 intergenic not near genes chr2L 12963915 intergenic not near genes chr2L_4_12960001 chr2L_12960001 RAL-380 253 chr2L 12990512 12990524 chr2L 12990593 12990605 4 81 5.5 2.5 4.0 0.8 93 chr2L 12990512 intergenic not near genes chr2L 12990558 intergenic not near genes chr2L 12990605 intergenic not near genes chr2L_4_12990001 chr2L_12990001 RAL-380 254 chr2L 13054445 13054477 chr2L 13054522 13054553 13 74 6.0 4.0 5.0 2.2 108 chr2L 13054445 intron CG9932 - chr2L 13054499 intron CG9932 - chr2L 13054553 intron CG9932 - chr2L_13_13050001 chr2L_13050001 RAL-380 255 chr2L 13076154 13076188 chr2L 13076508 13076542 6 354 18.0 21.0 19.5 0.3 388 chr2L 13076154 intergenic not near genes chr2L 13076348 intergenic not near genes chr2L 13076542 intergenic not near genes chr2L_6_13075001 chr2L_13075001 RAL-380 256 chr2L 13204325 13204335 chr2L 13204416 13204433 4 96 6.0 3.5 4.8 0.7 108 chr2L 13204325 intron Pect + chr2L 13204379 intron Pect + chr2L 13204433 intron Pect + chr2L_4_13200001 chr2L_13200001 RAL-380 257 chr2L 13405650 13405662 chr2L 13410447 13410459 Doc 7 4797 5.0 5.0 5.0 1.2 4809 chr2L 13405650 exon CG7110 + chr2L 13408054 intron CG7110 + chr2L 13410459 intron CG7110 + chr2L_7_13405001 chr2L_13405001 RAL-380 258 chr2L 13405663 13405680 chr2L 13410445 13410477 Doc 10 4795 2.5 5.0 3.8 2.1 4814 chr2L 13405663 exon CG7110 + chr2L 13408070 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-380 259 chr2L 13422380 13422506 chr2L 13422457 13422585 8 78 0.0 0.5 0.2 6.7 205 chr2L 13422380 intron CG42784 + chr2L 13422482 intron CG42784 + chr2L 13422585 intron CG42784 + chr2L_8_13420001 chr2L_13420001 RAL-380 260 chr2L 13481469 13481475 chr2L 13482067 13482082 jockey 4 604 6.5 7.5 7.0 0.5 613 chr2L 13481469 intron CG42784 + chr2L 13481776 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-380 261 chr2L 13618051 13618071 chr2L 13618142 13618156 6 90 5.5 7.0 6.2 0.8 105 chr2L 13618051 intron kuz + chr2L 13618104 intron kuz + chr2L 13618156 intron kuz + chr2L_6_13615001 chr2L_13615001 RAL-380 262 chr2L 13761809 13761835 chr2L 13762919 13762941 Doc 7 1107 6.5 4.5 5.5 1.1 1132 chr2L 13761809 intron TM9SF4 + chr2L 13762375 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-380 263 chr2L 13853098 13853116 chr2L 13862236 13862266 roo 4 9146 3.5 0.5 2.0 1.3 9168 chr2L 13853098 intron CenG1A + chr2L 13857682 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-380 264 chr2L 13981520 13981551 chr2L 13981611 13981641 13 91 3.0 2.5 2.8 3.4 121 chr2L 13981520 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981641 intron NimC2 + chr2L_13_13980001 chr2L_13980001 RAL-380 265 chr2L 14017767 14017793 chr2L 14017859 14017884 5 92 5.0 3.0 4.0 1.0 117 chr2L 14017767 intron bgm + chr2L 14017826 intron bgm + chr2L 14017884 intron bgm + chr2L_5_14015001 chr2L_14015001 RAL-380 266 chr2L 14042947 14042972 chr2L 14043398 14043423 4 451 0.0 4.5 2.2 1.2 476 chr2L 14042947 intron nAChRalpha5 + chr2L 14043185 intron nAChRalpha5 + chr2L 14043423 intron nAChRalpha5 + chr2L_4_14040001 chr2L_14040001 RAL-380 267 chr2L 14213203 14213228 chr2L 14213284 14213310 5 78 4.5 3.0 3.8 1.0 107 chr2L 14213203 intron Dyrk2 - chr2L 14213256 intron Dyrk2 - chr2L 14213310 intron Dyrk2 - chr2L_5_14210001 chr2L_14210001 RAL-380 268 chr2L 14246288 14246312 chr2L 14246366 14246390 9 78 0.0 0.5 0.2 7.5 102 chr2L 14246288 intergenic not near genes chr2L 14246339 intergenic not near genes chr2L 14246390 intergenic not near genes chr2L_9_14245001 chr2L_14245001 RAL-380 269 chr2L 14378653 14378680 chr2L 14378732 14378759 8 79 2.5 0.0 1.2 3.6 106 chr2L 14378653 3` UTR ppk - chr2L 14378706 3` UTR ppk - chr2L 14378759 3` UTR ppk - chr2L_8_14375001 chr2L_14375001 RAL-380 270 chr2L 14564197 14564216 chr2L 14564273 14564291 7 73 6.0 3.0 4.5 1.3 94 chr2L 14564197 intergenic CG3473 - chr2L 14564244 intergenic not near genes chr2L 14564291 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-380 271 chr2L 14564217 14564228 chr2L 14564269 14564275 8 55 3.0 3.0 3.0 2.0 58 chr2L 14564217 intergenic CG3473 - chr2L 14564246 intergenic not near genes chr2L 14564275 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-380 272 chr2L 14588383 14588418 chr2L 14588537 14588572 8 151 3.0 4.0 3.5 1.8 189 chr2L 14588383 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588572 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-380 273 chr2L 14642577 14642600 chr2L 14651740 14651763 roo 9 9163 0.0 4.5 2.2 2.8 9186 chr2L 14642577 intron osp - chr2L 14647170 intron osp - chr2L 14651763 intron osp - chr2L_9_14645001 chr2L_14645001 RAL-380 274 chr2L 14694257 14694284 chr2L 14694380 14694405 8 123 3.0 4.0 3.5 1.8 148 chr2L 14694257 intergenic not near genes chr2L 14694331 intergenic not near genes chr2L 14694405 intergenic not near genes chr2L_8_14690001 chr2L_14690001 RAL-380 275 chr2L 14765236 14765274 chr2L 14765317 14765354 19 79 4.5 3.5 4.0 3.8 118 chr2L 14765236 intergenic not near genes chr2L 14765295 intergenic not near genes chr2L 14765354 intergenic not near genes chr2L_19_14765001 chr2L_14765001 RAL-380 276 chr2L 14778813 14778831 chr2L 14779093 14779093 5 281 2.0 4.0 3.0 1.2 280 chr2L 14778813 intergenic not near genes chr2L 14778953 intergenic not near genes chr2L 14779093 intergenic not near genes chr2L_5_14775001 chr2L_14775001 RAL-380 277 chr2L 14786347 14786362 chr2L 14786425 14786454 6 87 1.0 2.5 1.8 2.1 107 chr2L 14786347 intergenic not near genes chr2L 14786400 intergenic not near genes chr2L 14786454 intergenic not near genes chr2L_6_14785001 chr2L_14785001 RAL-380 278 chr2L 14803886 14803913 chr2L 14809089 14809116 copia 8 5202 4.5 6.0 5.2 1.3 5230 chr2L 14803886 intergenic not near genes chr2L 14806501 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-380 279 chr2L 14840978 14841007 chr2L 14841065 14841086 8 84 1.0 5.5 3.2 1.9 108 chr2L 14840978 3` UTR CR43805 - chr2L 14841032 3` UTR CR43805 - chr2L 14841086 3` UTR CR43805 - chr2L_8_14840001 chr2L_14840001 RAL-380 280 chr2L 14888925 14888954 chr2L 14889009 14889038 9 85 6.0 5.0 5.5 1.4 113 chr2L 14888925 intergenic not near genes chr2L 14888982 intergenic not near genes chr2L 14889038 intergenic not near genes chr2L_9_14885001 chr2L_14885001 RAL-380 281 chr2L 14889953 14889988 chr2L 14890377 14890413 jockey 5 424 3.5 4.0 3.8 1.0 460 chr2L 14889953 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-380 282 chr2L 14982267 14982281 chr2L 14982364 14982378 4 96 0.5 4.0 2.2 1.2 111 chr2L 14982267 intron mol - chr2L 14982322 intron mol - chr2L 14982378 intron mol - chr2L_4_14980001 chr2L_14980001 RAL-380 283 chr2L 14984383 14984405 chr2L 14991984 14992007 opus 5 7601 5.5 0.0 2.8 1.3 7624 chr2L 14984383 intron mol - chr2L 14988195 intron mol - chr2L 14992007 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-380 284 chr2L 15013170 15013176 chr2L 15013272 15013283 4 106 0.0 3.0 1.5 1.6 113 chr2L 15013170 intergenic not near genes chr2L 15013226 intergenic not near genes chr2L 15013283 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-380 285 chr2L 15044707 15044739 chr2L 15044783 15044814 5 76 1.5 0.5 1.0 2.5 107 chr2L 15044707 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044814 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-380 286 chr2L 15077905 15078102 chr2L 15077991 15078189 13 85 1.5 3.5 2.5 3.7 284 chr2L 15077905 intron CG15270 + chr2L 15078047 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_13_15075001 chr2L_15075001 RAL-380 287 chr2L 15108498 15108527 chr2L 15108639 15108667 4 141 2.0 3.0 2.5 1.1 169 chr2L 15108498 intergenic not near genes chr2L 15108582 intergenic not near genes chr2L 15108667 intergenic not near genes chr2L_4_15105001 chr2L_15105001 RAL-380 288 chr2L 15240224 15240250 chr2L 15240335 15240360 5 111 2.5 1.0 1.8 1.8 136 chr2L 15240224 intron ZnT35C - chr2L 15240292 intron ZnT35C - chr2L 15240360 intron ZnT35C - chr2L_5_15240001 chr2L_15240001 RAL-380 289 chr2L 15252983 15253002 chr2L 15253062 15253081 7 79 1.0 1.0 1.0 3.5 98 chr2L 15252983 intron dao + chr2L 15253032 intron dao + chr2L 15253081 intron dao + chr2L_7_15250001 chr2L_15250001 RAL-380 290 chr2L 15350898 15350932 chr2L 15350981 15351016 5 84 2.0 4.0 3.0 1.2 118 chr2L 15350898 intergenic not near genes chr2L 15350957 intergenic not near genes chr2L 15351016 intergenic not near genes chr2L_5_15350001 chr2L_15350001 RAL-380 291 chr2L 15446059 15446081 chr2L 15453528 15453550 blood 7 7469 0.5 5.0 2.8 1.8 7491 chr2L 15446059 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453550 intergenic not near genes chr2L_7_15445001 chr2L_15445001 RAL-380 292 chr2L 15476400 15476422 chr2L 15476559 15476581 7 159 2.0 1.0 1.5 2.8 181 chr2L 15476400 intergenic sna - chr2L 15476490 intergenic sna - chr2L 15476581 intergenic sna - chr2L_7_15475001 chr2L_15475001 RAL-380 293 chr2L 15500824 15500854 chr2L 15500901 15500931 10 77 2.5 1.0 1.8 3.6 107 chr2L 15500824 intron lace + chr2L 15500878 intron lace + chr2L 15500931 intron lace + chr2L_10_15500001 chr2L_15500001 RAL-380 294 chr2L 15510937 15510964 chr2L 15511030 15511045 8 91 4.5 3.0 3.8 1.7 108 chr2L 15510937 intergenic not near genes chr2L 15510991 intergenic not near genes chr2L 15511045 intergenic not near genes chr2L_8_15510001 chr2L_15510001 RAL-380 295 chr2L 15586409 15586439 chr2L 15593461 15593491 297 9 7052 1.5 0.0 0.8 5.0 7082 chr2L 15586409 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_9_15585001 chr2L_15585001 RAL-380 296 chr2L 15795624 15795647 chr2L 15795794 15795820 7 173 2.5 1.0 1.8 2.5 196 chr2L 15795624 intergenic not near genes chr2L 15795722 intergenic not near genes chr2L 15795820 intergenic not near genes chr2L_7_15795001 chr2L_15795001 RAL-380 297 chr2L 15823351 15823371 chr2L 15823427 15823447 4 76 2.0 2.5 2.2 1.2 96 chr2L 15823351 intergenic CR44601 - chr2L 15823399 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-380 298 chr2L 15825669 15825692 chr2L 15825747 15825770 7 77 6.0 3.5 4.8 1.2 101 chr2L 15825669 intergenic not near genes chr2L 15825720 intergenic not near genes chr2L 15825770 intergenic not near genes chr2L_7_15825001 chr2L_15825001 RAL-380 299 chr2L 15844536 15844568 chr2L 15844613 15844644 8 70 2.5 4.5 3.5 1.8 108 chr2L 15844536 intergenic not near genes chr2L 15844590 intergenic not near genes chr2L 15844644 intergenic not near genes chr2L_8_15840001 chr2L_15840001 RAL-380 300 chr2L 15950392 15950406 chr2L 15950464 15950479 5 75 1.5 2.0 1.8 1.8 87 chr2L 15950392 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950479 intron beat-Ib - chr2L_5_15950001 chr2L_15950001 RAL-380 301 chr2L 15956027 15956047 chr2L 15957494 15957514 hobo 7 1467 4.0 3.0 3.5 1.6 1487 chr2L 15956027 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957514 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-380 302 chr2L 15960854 15960862 chr2L 15961175 15961183 5 320 15.0 2.5 8.8 0.5 329 chr2L 15960854 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961018 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961183 intron,5` UTR beat-Ib -,CR43803 + chr2L_5_15960001 chr2L_15960001 RAL-380 303 chr2L 16027395 16027399 chr2L 16027471 16027475 4 76 1.5 0.5 1.0 2.0 80 chr2L 16027395 intron beat-Ic + chr2L 16027435 intron beat-Ic + chr2L 16027475 intron beat-Ic + chr2L_4_16025001 chr2L_16025001 RAL-380 304 chr2L 16059963 16059978 chr2L 16060061 16060076 6 98 5.0 2.0 3.5 1.3 113 chr2L 16059963 intron beat-Ia + chr2L 16060020 intron beat-Ia + chr2L 16060076 intron beat-Ia + chr2L_6_16060001 chr2L_16060001 RAL-380 305 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 22.5 12.0 17.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-380 306 chr2L 16141162 16141193 chr2L 16146369 16146400 copia 8 5207 1.5 3.5 2.5 2.3 5238 chr2L 16141162 intergenic not near genes chr2L 16143781 intergenic not near genes chr2L 16146400 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-380 307 chr2L 9084336 9084340 chr2L 16217660 16217660 14 7133321 12.5 12.0 12.2 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-380 308 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 22.5 12.0 17.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-380 309 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 11.5 29.0 20.2 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-380 310 chr2L 16242081 16242089 chr2L 16242173 16242181 4 92 1.0 0.0 0.5 2.7 100 chr2L 16242081 exon CG42818 + chr2L 16242131 exon CG42818 + chr2L 16242181 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-380 311 chr2L 16280254 16280284 chr2L 16281425 16281455 1360 9 1170 3.5 4.0 3.8 1.9 1201 chr2L 16280254 intron crp - chr2L 16280854 intron crp - chr2L 16281455 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-380 312 chr2L 16354776 16354785 chr2L 16354868 16354876 9 91 2.5 3.5 3.0 2.2 100 chr2L 16354776 intergenic CaBP1 -,CG4455 + chr2L 16354826 intergenic CaBP1 -,CG4455 + chr2L 16354876 intergenic CaBP1 -,CG4455 + chr2L_9_16350001 chr2L_16350001 RAL-380 313 chr2L 16363944 16363975 chr2L 16364190 16364221 5 246 2.5 0.0 1.2 2.3 277 chr2L 16363944 intergenic not near genes chr2L 16364082 intergenic not near genes chr2L 16364221 intergenic not near genes chr2L_5_16360001 chr2L_16360001 RAL-380 314 chr2L 16480619 16480638 chr2L 16480707 16480724 5 87 5.0 6.0 5.5 0.8 105 chr2L 16480619 intron dac - chr2L 16480672 intron dac - chr2L 16480724 intron dac - chr2L_5_16480001 chr2L_16480001 RAL-380 315 chr2L 16504994 16505002 chr2L 16505102 16505112 4 109 0.0 1.5 0.8 2.2 118 chr2L 16504994 intron Tpr2 + chr2L 16505053 intron Tpr2 + chr2L 16505112 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-380 316 chr2L 16511977 16511996 chr2L 16519084 16519110 HMS-Beagle 5 7113 0.5 2.0 1.2 2.3 7133 chr2L 16511977 intron CG5953 - chr2L 16515544 intron CG5953 - chr2L 16519110 intron CG5953 - chr2L_5_16515001 chr2L_16515001 RAL-380 317 chr2L 16522747 16522764 chr2L 16522834 16522851 4 87 1.0 2.5 1.8 1.4 104 chr2L 16522747 intron CG5953 - chr2L 16522799 intron CG5953 - chr2L 16522851 intron CG5953 - chr2L_4_16520001 chr2L_16520001 RAL-380 318 chr2L 16537329 16537346 chr2L 16537405 16537422 5 76 2.0 4.0 3.0 1.2 93 chr2L 16537329 intergenic not near genes chr2L 16537376 intergenic not near genes chr2L 16537422 intergenic not near genes chr2L_5_16535001 chr2L_16535001 RAL-380 319 chr2L 16562282 16562290 chr2L 16562365 16562371 4 82 1.5 4.0 2.8 1.1 89 chr2L 16562282 intron CG42389 + chr2L 16562326 intron CG42389 + chr2L 16562371 intron CG42389 + chr2L_4_16560001 chr2L_16560001 RAL-380 320 chr2L 16585785 16585813 chr2L 16585874 16585902 10 87 2.5 6.5 4.5 1.8 117 chr2L 16585785 intron CG42389 + chr2L 16585844 intron CG42389 + chr2L 16585902 intron CG42389 + chr2L_10_16585001 chr2L_16585001 RAL-380 321 chr2L 16670424 16670449 chr2L 16670497 16670526 6 76 2.5 1.5 2.0 2.0 102 chr2L 16670424 intron Trpgamma - chr2L 16670475 intron Trpgamma - chr2L 16670526 intron Trpgamma - chr2L_6_16670001 chr2L_16670001 RAL-380 322 chr2L 16694133 16694143 chr2L 16694218 16694229 4 85 7.5 4.5 6.0 0.6 96 chr2L 16694133 intron grp + chr2L 16694181 intron grp + chr2L 16694229 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-380 323 chr2L 16694149 16694162 chr2L 16694212 16694220 4 72 4.0 4.0 4.0 0.8 71 chr2L 16694149 intron grp + chr2L 16694184 intron grp + chr2L 16694220 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-380 324 chr2L 16695265 16695290 chr2L 16695343 16695371 4 82 1.5 1.5 1.5 1.6 106 chr2L 16695265 intron grp + chr2L 16695318 intron grp + chr2L 16695371 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-380 325 chr2L 16721025 16721061 chr2L 16721101 16721131 15 74 6.0 3.5 4.8 2.6 106 chr2L 16721025 intron Cyt-c-p + chr2L 16721078 intron Cyt-c-p + chr2L 16721131 intron Cyt-c-p + chr2L_15_16720001 chr2L_16720001 RAL-380 326 chr2L 16728928 16728954 chr2L 16729563 16729588 6 635 4.0 2.0 3.0 1.5 660 chr2L 16728928 intergenic not near genes chr2L 16729258 intergenic not near genes chr2L 16729588 intergenic CG31812 + chr2L_6_16725001 chr2L_16725001 RAL-380 327 chr2L 16764978 16765000 chr2L 16765058 16765079 5 80 3.0 1.0 2.0 1.7 101 chr2L 16764978 intergenic not near genes chr2L 16765028 intergenic not near genes chr2L 16765079 intergenic not near genes chr2L_5_16765001 chr2L_16765001 RAL-380 328 chr2L 16767092 16767124 chr2L 16767168 16767200 7 76 2.0 3.0 2.5 2.0 108 chr2L 16767092 intron Mhc + chr2L 16767146 intron Mhc + chr2L 16767200 intron Mhc + chr2L_7_16765001 chr2L_16765001 RAL-380 329 chr2L 16920012 16920036 chr2L 16920090 16920110 9 78 3.5 6.5 5.0 1.5 98 chr2L 16920012 intergenic not near genes chr2L 16920061 intergenic not near genes chr2L 16920110 intergenic not near genes chr2L_9_16920001 chr2L_16920001 RAL-380 330 chr2L 16958111 16958136 chr2L 16962889 16962924 Doc 8 4786 2.0 2.0 2.0 2.7 4813 chr2L 16958111 intergenic not near genes chr2L 16960518 intergenic not near genes chr2L 16962924 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-380 331 chr2L 17005423 17005428 chr2L 17005509 17005517 4 92 5.0 6.0 5.5 0.6 94 chr2L 17005423 intergenic not near genes chr2L 17005470 intergenic not near genes chr2L 17005517 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-380 332 chr2L 17046283 17046313 chr2L 17046396 17046425 7 109 3.5 3.0 3.2 1.7 142 chr2L 17046283 intergenic not near genes chr2L 17046354 intergenic not near genes chr2L 17046425 intergenic not near genes chr2L_7_17045001 chr2L_17045001 RAL-380 333 chr2L 17101909 17101915 chr2L 17101983 17101992 5 75 2.0 5.5 3.8 1.0 83 chr2L 17101909 intergenic not near genes chr2L 17101950 intergenic not near genes chr2L 17101992 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-380 334 chr2L 17120849 17120872 chr2L 17120928 17120951 5 79 3.5 4.0 3.8 1.0 102 chr2L 17120849 intergenic not near genes chr2L 17120900 intergenic not near genes chr2L 17120951 intergenic not near genes chr2L_5_17120001 chr2L_17120001 RAL-380 335 chr2L 17165051 17165069 chr2L 17165695 17165704 5 641 5.0 3.0 4.0 1.0 653 chr2L 17165051 intron,intron CG34106 +,beat-IIIa + chr2L 17165378 intron,intron CG34106 +,beat-IIIa + chr2L 17165704 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-380 336 chr2L 17167583 17167596 chr2L 17167809 17167837 pogo 4 237 1.0 1.5 1.2 1.8 254 chr2L 17167583 intron,intron CG34106 +,beat-IIIa + chr2L 17167710 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-380 337 chr2L 17199164 17199186 chr2L 17200631 17200653 hobo 4 1467 2.0 4.0 3.0 1.0 1489 chr2L 17199164 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200653 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-380 338 chr2L 17254104 17254119 chr2L 17254179 17254194 4 72 3.0 4.5 3.8 0.8 90 chr2L 17254104 intron beat-IIIc - chr2L 17254149 intron beat-IIIc - chr2L 17254194 intron beat-IIIc - chr2L_4_17250001 chr2L_17250001 RAL-380 339 chr2L 17273194 17273224 chr2L 17277976 17278005 F-element 10 4780 2.5 2.0 2.2 3.1 4811 chr2L 17273194 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-380 340 chr2L 17386009 17386044 chr2L 17386090 17386125 10 81 2.0 4.0 3.0 2.5 116 chr2L 17386009 intron CLIP-190 + chr2L 17386067 intron CLIP-190 + chr2L 17386125 intron CLIP-190 + chr2L_10_17385001 chr2L_17385001 RAL-380 341 chr2L 17432017 17432049 chr2L 17432124 17432156 1360 10 107 0.0 1.0 0.5 6.7 139 chr2L 17432017 intron Dif - chr2L 17432086 intron Dif - chr2L 17432156 intron Dif - chr2L_10_17430001 chr2L_17430001 RAL-380 342 chr2L 17466432 17466455 chr2L 17466525 17466548 9 92 1.0 7.0 4.0 1.8 116 chr2L 17466432 intron BicD - chr2L 17466490 intron BicD - chr2L 17466548 intron BicD - chr2L_9_17465001 chr2L_17465001 RAL-380 343 chr2L 17730973 17731005 chr2L 17731120 17731138 5 144 4.0 2.5 3.2 1.2 165 chr2L 17730973 intron CadN - chr2L 17731056 intron CadN - chr2L 17731138 intron CadN - chr2L_5_17730001 chr2L_17730001 RAL-380 344 chr2L 17805514 17805549 chr2L 17805656 17805691 14 138 3.0 2.0 2.5 4.0 177 chr2L 17805514 intron CadN2 - chr2L 17805602 intron CadN2 - chr2L 17805691 intron CadN2 - chr2L_14_17805001 chr2L_17805001 RAL-380 345 chr2L 17819929 17819956 chr2L 17825131 17825159 copia 6 5202 3.0 3.5 3.2 1.4 5230 chr2L 17819929 intron CadN2 - chr2L 17822544 intron CadN2 - chr2L 17825159 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-380 346 chr2L 17837153 17837170 chr2L 17837253 17837264 5 96 2.5 2.0 2.2 1.6 111 chr2L 17837153 intron CadN2 - chr2L 17837208 intron CadN2 - chr2L 17837264 intron CadN2 - chr2L_5_17835001 chr2L_17835001 RAL-380 347 chr2L 17880000 17880020 chr2L 17880087 17880107 6 84 5.0 2.0 3.5 1.3 107 chr2L 17880000 intergenic not near genes chr2L 17880054 intergenic not near genes chr2L 17880107 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-380 348 chr2L 17906765 17906785 chr2L 17906848 17906866 5 81 2.0 2.5 2.2 1.6 101 chr2L 17906765 intergenic not near genes chr2L 17906816 intergenic not near genes chr2L 17906866 intergenic not near genes chr2L_5_17905001 chr2L_17905001 RAL-380 349 chr2L 17930763 17930794 chr2L 17930849 17930879 7 85 2.5 1.5 2.0 2.3 116 chr2L 17930763 intergenic not near genes chr2L 17930821 intergenic not near genes chr2L 17930879 intergenic not near genes chr2L_7_17930001 chr2L_17930001 RAL-380 350 chr2L 17938718 17938881 chr2L 17938804 17938972 9 90 0.5 10.0 5.2 1.5 254 chr2L 17938718 intergenic CR44399 - chr2L 17938845 intergenic CR44399 - chr2L 17938972 intergenic CR44399 - chr2L_9_17935001 chr2L_17935001 RAL-380 351 chr2L 17951943 17951973 chr2L 17953410 17953440 hobo 15 1467 5.5 2.5 4.0 3.0 1497 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953440 intergenic not near genes chr2L_15_17950001 chr2L_17950001 RAL-380 352 chr2L 18040727 18040750 chr2L 18040816 18040830 8 88 5.0 1.5 3.2 1.9 103 chr2L 18040727 intron rdo + chr2L 18040778 intron rdo + chr2L 18040830 intron rdo + chr2L_8_18040001 chr2L_18040001 RAL-380 353 chr2L 18047043 18047061 chr2L 18047125 18047143 7 81 7.0 5.0 6.0 1.0 100 chr2L 18047043 intron rdo + chr2L 18047093 intron rdo + chr2L 18047143 intron rdo + chr2L_7_18045001 chr2L_18045001 RAL-380 354 chr2L 18051878 18051901 chr2L 18061025 18061048 roo 6 9147 4.0 1.0 2.5 1.7 9170 chr2L 18051878 intron rdo + chr2L 18056463 intron rdo + chr2L 18061048 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-380 355 chr2L 18169904 18169926 chr2L 18169980 18170003 7 75 4.0 3.5 3.8 1.5 99 chr2L 18169904 intron CG42750 - chr2L 18169954 intron CG42750 - chr2L 18170003 intron CG42750 - chr2L_7_18165001 chr2L_18165001 RAL-380 356 chr2L 18254815 18254838 chr2L 18254914 18254938 7 99 0.5 5.5 3.0 1.8 123 chr2L 18254815 intron CG42750 - chr2L 18254876 intron CG42750 - chr2L 18254938 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-380 357 chr2L 18264140 18264163 chr2L 18264228 18264251 5 87 3.0 0.5 1.8 1.8 111 chr2L 18264140 intron CG42750 - chr2L 18264196 intron CG42750 - chr2L 18264251 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-380 358 chr2L 18291538 18291562 chr2L 18291632 18291660 11 93 0.0 0.0 0.0 11.0 122 chr2L 18291538 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291599 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291660 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_11_18290001 chr2L_18290001 RAL-380 359 chr2L 16217660 16217660 chr2L 18331928 18331928 F-element 5 2114268 11.5 3.5 7.5 0.6 2114268 chr2L 16217660 intergenic not near genes chr2L 17274794 intergenic not near genes chr2L 18331928 intron Fas3 + chr2L_5_17270001 chr2L_17270001 RAL-380 360 chr2L 18408023 18408055 chr2L 18412807 18412839 Doc 11 4784 2.5 0.0 1.2 5.0 4816 chr2L 18408023 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_11_18410001 chr2L_18410001 RAL-380 361 chr2L 18449389 18449406 chr2L 18449490 18449506 7 101 2.5 3.0 2.8 1.8 117 chr2L 18449389 intergenic bsf -,ncm - chr2L 18449448 intergenic bsf -,ncm - chr2L 18449506 intergenic bsf - chr2L_7_18445001 chr2L_18445001 RAL-380 362 chr2L 18463276 18463300 chr2L 18463758 18463769 5 480 0.5 3.0 1.8 1.8 493 chr2L 18463276 intron let-7-C + chr2L 18463522 intron let-7-C + chr2L 18463769 intron let-7-C + chr2L_5_18460001 chr2L_18460001 RAL-380 363 chr2L 18628081 18628092 chr2L 18628281 18628293 4 199 2.5 2.0 2.2 1.2 212 chr2L 18628081 intron MESR3 + chr2L 18628187 intron MESR3 + chr2L 18628293 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-380 364 chr2L 18759594 18759613 chr2L 18759746 18759765 7 151 2.5 4.0 3.2 1.7 171 chr2L 18759594 intergenic not near genes chr2L 18759680 intergenic not near genes chr2L 18759765 intergenic not near genes chr2L_7_18755001 chr2L_18755001 RAL-380 365 chr2L 18898401 18898428 chr2L 18898483 18898510 11 80 3.0 3.0 3.0 2.8 109 chr2L 18898401 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898510 intergenic not near genes chr2L_11_18895001 chr2L_18895001 RAL-380 366 chr2L 18990313 18990342 chr2L 18990421 18990452 12 110 5.0 3.5 4.2 2.3 139 chr2L 18990313 intergenic CG15170 - chr2L 18990382 intergenic CG15170 - chr2L 18990452 intergenic CG15170 - chr2L_12_18990001 chr2L_18990001 RAL-380 367 chr2L 19024096 19024097 chr2L 21768291 21768291 14 2744195 22.5 26.0 24.2 0.6 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_14_20395001 chr2L_20395001 RAL-380 368 chr2L 19070290 19070300 chr2L 19070375 19070378 4 86 4.0 5.5 4.8 0.7 88 chr2L 19070290 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070378 intergenic not near genes chr2L_4_19070001 chr2L_19070001 RAL-380 369 chr2L 19309095 19309127 chr2L 19309188 19309206 8 88 5.0 6.5 5.8 1.2 111 chr2L 19309095 intergenic not near genes chr2L 19309150 intergenic not near genes chr2L 19309206 intergenic not near genes chr2L_8_19305001 chr2L_19305001 RAL-380 370 chr2L 19331673 19331694 chr2L 19331747 19331773 6 76 1.0 2.5 1.8 2.1 100 chr2L 19331673 intergenic not near genes chr2L 19331723 intergenic not near genes chr2L 19331773 intergenic not near genes chr2L_6_19330001 chr2L_19330001 RAL-380 371 chr2L 19345015 19345046 chr2L 19357222 19357250 blood 9 12208 3.0 2.0 2.5 2.6 12235 chr2L 19345015 intron dnt - chr2L 19351132 intron dnt - chr2L 19357250 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-380 372 chr2L 19357555 19357569 chr2L 19357637 19357638 15 86 5.0 4.0 4.5 2.7 83 chr2L 19357555 intron dnt - chr2L 19357596 intron dnt - chr2L 19357638 intron dnt - chr2L_15_19355001 chr2L_19355001 RAL-380 373 chr2L 19376351 19376375 chr2L 19376735 19376740 4 379 0.0 3.5 1.8 1.4 389 chr2L 19376351 intergenic not near genes chr2L 19376546 intergenic not near genes chr2L 19376740 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-380 374 chr2L 19407722 19407733 chr2L 19407919 19407926 6 195 3.5 6.5 5.0 1.0 204 chr2L 19407722 intron Pax - chr2L 19407824 intron Pax - chr2L 19407926 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-380 375 chr2L 19415567 19415597 chr2L 19415754 19415784 8 187 4.0 5.0 4.5 1.5 217 chr2L 19415567 intron Pax - chr2L 19415676 intron Pax - chr2L 19415784 intron Pax - chr2L_8_19415001 chr2L_19415001 RAL-380 376 chr2L 19441066 19441083 chr2L 19441143 19441160 10 76 9.5 7.0 8.2 1.1 94 chr2L 19441066 intron CG10237 - chr2L 19441113 intron CG10237 - chr2L 19441160 5` UTR CG10237 - chr2L_10_19440001 chr2L_19440001 RAL-380 377 chr2L 19469174 19469202 chr2L 19469259 19469287 9 85 1.5 3.5 2.5 2.6 113 chr2L 19469174 5` UTR CR45722 + chr2L 19469230 5` UTR CR45722 + chr2L 19469287 5` UTR CR45722 + chr2L_9_19465001 chr2L_19465001 RAL-380 378 chr2L 19541630 19541660 chr2L 19541715 19541744 9 83 1.0 3.5 2.2 2.8 114 chr2L 19541630 intergenic CG13081 + chr2L 19541687 intergenic CG13081 + chr2L 19541744 intergenic CG13081 + chr2L_9_19540001 chr2L_19540001 RAL-380 379 chr2L 19544606 19544624 chr2L 19544667 19544700 4 73 6.0 10.5 8.2 0.4 94 chr2L 19544606 exon ref(2)P + chr2L 19544653 exon ref(2)P + chr2L 19544700 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-380 380 chr2L 19558519 19558548 chr2L 19558623 19558652 4 104 2.5 2.5 2.5 1.1 133 chr2L 19558519 intron Tep5 + chr2L 19558586 intron Tep5 + chr2L 19558652 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-380 381 chr2L 19560004 19560037 chr2L 19560257 19560289 6 251 4.5 3.5 4.0 1.2 285 chr2L 19560004 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-380 382 chr2L 19560830 19560857 chr2L 19560910 19560937 5 80 3.0 1.5 2.2 1.6 107 chr2L 19560830 intron Tep5 + chr2L 19560884 exon Tep5 + chr2L 19560937 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-380 383 chr2L 19561345 19561361 chr2L 19561485 19561501 11 140 4.0 8.0 6.0 1.6 156 chr2L 19561345 exon Tep5 + chr2L 19561423 exon Tep5 + chr2L 19561501 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-380 384 chr2L 19587795 19587820 chr2L 19587891 19587916 12 96 8.0 3.5 5.8 1.8 121 chr2L 19587795 intron Lar + chr2L 19587856 intron Lar + chr2L 19587916 intron Lar + chr2L_12_19585001 chr2L_19585001 RAL-380 385 chr2L 19601573 19601599 chr2L 19601650 19601675 11 77 1.5 4.5 3.0 2.8 102 chr2L 19601573 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601675 intron,intron Lar +,CR44978 - chr2L_11_19600001 chr2L_19600001 RAL-380 386 chr2L 19620101 19620125 chr2L 19621084 19621084 jockey 5 975 3.0 5.0 4.0 1.0 983 chr2L 19620101 intron Lar + chr2L 19620592 intron Lar + chr2L 19621084 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-380 387 chr2L 19652573 19652604 chr2L 19674007 19674038 opus 9 21430 4.0 2.0 3.0 2.2 21465 chr2L 19652573 intron Lar + chr2L 19663306 intron Lar + chr2L 19674038 intron Lar + chr2L_9_19660001 chr2L_19660001 RAL-380 388 chr2L 19696400 19696419 chr2L 19696477 19696508 7 85 0.0 1.0 0.5 4.7 108 chr2L 19696400 intron Lar + chr2L 19696454 intron Lar + chr2L 19696508 intron Lar + chr2L_7_19695001 chr2L_19695001 RAL-380 389 chr2L 19703536 19703569 chr2L 19712672 19712704 roo 12 9136 6.5 5.0 5.8 1.8 9168 chr2L 19703536 intron Lar + chr2L 19708120 intron Lar + chr2L 19712704 intron Lar + chr2L_12_19705001 chr2L_19705001 RAL-380 390 chr2L 19737358 19737366 chr2L 19740824 19740835 1360 4 3468 1.0 1.5 1.2 1.8 3477 chr2L 19737358 intergenic Nf-YB + chr2L 19739096 intergenic not near genes chr2L 19740835 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-380 391 chr2L 19737370 19737389 chr2L 19740820 19740835 1360 9 3459 1.0 1.5 1.2 4.1 3465 chr2L 19737370 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740835 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-380 392 chr2L 19837279 19837377 chr2L 19837358 19837458 19 78 10.0 4.0 7.0 2.4 179 chr2L 19837279 intron sick + chr2L 19837368 intron sick + chr2L 19837458 intron sick + chr2L_19_19835001 chr2L_19835001 RAL-380 393 chr2L 19871551 19871572 chr2L 19871636 19871659 9 84 3.0 4.5 3.8 1.9 108 chr2L 19871551 intron sick + chr2L 19871605 intron sick + chr2L 19871659 intron sick + chr2L_9_19870001 chr2L_19870001 RAL-380 394 chr2L 19888319 19888327 chr2L 19888389 19888407 4 78 1.5 3.0 2.2 1.2 88 chr2L 19888319 intron sick + chr2L 19888363 intron sick + chr2L 19888407 intron sick + chr2L_4_19885001 chr2L_19885001 RAL-380 395 chr2L 19911702 19911728 chr2L 19911788 19911817 14 88 5.0 4.5 4.8 2.4 115 chr2L 19911702 intron,3` UTR sick +,CR43097 - chr2L 19911760 intron,3` UTR sick +,CR43097 - chr2L 19911817 intron,3` UTR sick +,TotF - chr2L_14_19910001 chr2L_19910001 RAL-380 396 chr2L 20005870 20005899 chr2L 20010946 20010975 flea 5 5075 4.0 3.0 3.5 1.1 5105 chr2L 20005870 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010975 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-380 397 chr2L 20011734 20011760 chr2L 20011817 20011842 4 83 0.0 1.0 0.5 2.7 108 chr2L 20011734 intron CG43861 - chr2L 20011788 intron CG43861 - chr2L 20011842 intron CG43861 - chr2L_4_20010001 chr2L_20010001 RAL-380 398 chr2L 20272112 20272139 chr2L 20282823 20282850 copia 13 10710 2.5 1.5 2.0 4.3 10738 chr2L 20272112 intergenic not near genes chr2L 20277481 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_13_20275001 chr2L_20275001 RAL-380 399 chr2L 20296506 20296538 chr2L 20296587 20296619 10 78 0.0 1.0 0.5 6.7 113 chr2L 20296506 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296619 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-380 400 chr2L 20303162 20303192 chr2L 20310630 20310660 blood 5 7468 1.5 1.5 1.5 2.0 7498 chr2L 20303162 intergenic not near genes chr2L 20306911 intergenic not near genes chr2L 20310660 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-380 401 chr2L 20310886 20310915 chr2L 20310965 20310994 4 79 0.0 3.5 1.8 1.4 108 chr2L 20310886 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310994 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-380 402 chr2L 20367553 20367579 chr2L 20367689 20367695 6 133 3.0 4.5 3.8 1.2 142 chr2L 20367553 intergenic not near genes chr2L 20367624 intergenic not near genes chr2L 20367695 intergenic not near genes chr2L_6_20365001 chr2L_20365001 RAL-380 403 chr2L 20429675 20429688 chr2L 20429789 20429794 4 112 5.5 4.5 5.0 0.7 119 chr2L 20429675 intron CG31688 + chr2L 20429734 intron CG31688 + chr2L 20429794 intron CG31688 + chr2L_4_20425001 chr2L_20425001 RAL-380 404 chr2L 20498689 20498708 chr2L 20498788 20498805 5 98 2.0 5.0 3.5 1.1 116 chr2L 20498689 intergenic not near genes chr2L 20498747 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-380 405 chr2L 20507477 20507490 chr2L 20507795 20507808 4 318 2.5 2.0 2.2 1.2 331 chr2L 20507477 intergenic not near genes chr2L 20507642 intergenic not near genes chr2L 20507808 intergenic not near genes chr2L_4_20505001 chr2L_20505001 RAL-380 406 chr2L 20568663 20568676 chr2L 20569053 20569066 X-element 4 390 5.5 5.0 5.2 0.6 403 chr2L 20568663 intron CR45347 + chr2L 20568864 intron CR45347 + chr2L 20569066 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-380 407 chr2L 20576222 20576239 chr2L 20583687 20583707 blood 6 7465 7.0 3.5 5.2 1.0 7485 chr2L 20576222 intergenic not near genes chr2L 20579964 intergenic not near genes chr2L 20583707 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-380 408 chr2L 20611245 20611266 chr2L 20611321 20611355 5 86 1.5 4.0 2.8 1.3 110 chr2L 20611245 intron CR44909 - chr2L 20611300 intron CR44909 - chr2L 20611355 intron CR44909 - chr2L_5_20610001 chr2L_20610001 RAL-380 409 chr2L 20668690 20668721 chr2L 20668766 20668794 8 76 4.5 5.0 4.8 1.4 104 chr2L 20668690 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668794 intron CG31678 - chr2L_8_20665001 chr2L_20665001 RAL-380 410 chr2L 20774096 20774130 chr2L 20774324 20774360 11 228 2.5 4.0 3.2 2.6 264 chr2L 20774096 intron cad + chr2L 20774228 intron cad + chr2L 20774360 intron cad + chr2L_11_20770001 chr2L_20770001 RAL-380 411 chr2L 20818012 20818041 chr2L 20818416 20818452 13 408 6.5 5.5 6.0 1.9 440 chr2L 20818012 intron CheB38a - chr2L 20818232 intron CheB38a - chr2L 20818452 exon CheB38a - chr2L_13_20815001 chr2L_20815001 RAL-380 412 chr2L 20840040 20840044 chr2L 20840247 20840256 4 209 3.5 4.5 4.0 0.8 216 chr2L 20840040 intergenic not near genes chr2L 20840148 intergenic not near genes chr2L 20840256 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-380 413 chr2L 20840047 20840056 chr2L 20840237 20840268 4 203 1.5 2.5 2.0 1.3 221 chr2L 20840047 intergenic not near genes chr2L 20840158 intergenic not near genes chr2L 20840268 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-380 414 chr2L 20848167 20848193 chr2L 20848243 20848269 6 76 4.5 4.0 4.2 1.2 102 chr2L 20848167 intron CG31676 + chr2L 20848218 intron CG31676 + chr2L 20848269 intron CG31676 + chr2L_6_20845001 chr2L_20845001 RAL-380 415 chr2L 20901476 20901488 chr2L 20902619 20902648 1360 4 1158 0.5 1.0 0.8 2.2 1172 chr2L 20901476 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902648 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-380 416 chr2L 20946947 20946962 chr2L 20947034 20947048 6 84 3.0 4.0 3.5 1.3 101 chr2L 20946947 intergenic CR44606 - chr2L 20946998 intergenic CR44606 - chr2L 20947048 intergenic CR44606 - chr2L_6_20945001 chr2L_20945001 RAL-380 417 chr2L 20967092 20967103 chr2L 20967177 20967189 7 86 2.5 5.0 3.8 1.5 97 chr2L 20967092 3` UTR CG42238 - chr2L 20967140 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-380 418 chr2L 20976659 20976676 chr2L 20981470 20981489 X-element 5 4813 1.0 4.5 2.8 1.3 4830 chr2L 20976659 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981489 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-380 419 chr2L 20984743 20984766 chr2L 20984829 20984830 9 82 4.0 2.0 3.0 2.2 87 chr2L 20984743 intron CG42238 - chr2L 20984786 intron CG42238 - chr2L 20984830 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-380 420 chr2L 20986904 20986934 chr2L 20987240 20987270 5 336 2.0 3.5 2.8 1.3 366 chr2L 20986904 intron CG42238 - chr2L 20987087 intron CG42238 - chr2L 20987270 intron CG42238 - chr2L_5_20985001 chr2L_20985001 RAL-380 421 chr2L 20991041 20991063 chr2L 20991117 20991141 12 77 3.5 3.5 3.5 2.7 100 chr2L 20991041 intron CG42238 - chr2L 20991091 intron CG42238 - chr2L 20991141 intron CG42238 - chr2L_12_20990001 chr2L_20990001 RAL-380 422 chr2L 21020275 21020311 chr2L 21023952 21023987 NOF 15 3675 3.0 2.0 2.5 4.3 3712 chr2L 21020275 intron CG42238 - chr2L 21022131 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_15_21020001 chr2L_21020001 RAL-380 423 chr2L 21041134 21041161 chr2L 21049395 21049422 Tirant 13 8260 5.0 2.5 3.8 2.7 8288 chr2L 21041134 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049422 intron CG42238 - chr2L_13_21045001 chr2L_21045001 RAL-380 424 chr2L 21074919 21074950 chr2L 21075010 21075041 8 91 4.5 2.0 3.2 1.9 122 chr2L 21074919 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075041 intergenic tadr + chr2L_8_21070001 chr2L_21070001 RAL-380 425 chr2L 21113688 21113717 chr2L 21113781 21113810 17 93 2.5 3.5 3.0 4.2 122 chr2L 21113688 intron Nhe2 + chr2L 21113749 intron Nhe2 + chr2L 21113810 intron Nhe2 + chr2L_17_21110001 chr2L_21110001 RAL-380 426 chr2L 21190801 21190833 chr2L 21191402 21191434 5 601 1.0 2.0 1.5 2.0 633 chr2L 21190801 intron Ret - chr2L 21191118 intron Ret - chr2L 21191434 intron Ret - chr2L_5_21190001 chr2L_21190001 RAL-380 427 chr2L 21286605 21286632 chr2L 21286682 21286710 7 78 2.0 0.5 1.2 3.2 105 chr2L 21286605 exon Mio - chr2L 21286658 intron Mio - chr2L 21286710 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-380 428 chr2L 21347552 21347582 chr2L 21355024 21355054 blood 6 7470 2.5 1.0 1.8 2.1 7502 chr2L 21347552 intron Tsp39D + chr2L 21351303 intron Tsp39D + chr2L 21355054 intron Tsp39D + chr2L_6_21350001 chr2L_21350001 RAL-380 429 chr2L 21355613 21355629 chr2L 21355758 21355774 6 145 1.5 4.0 2.8 1.6 161 chr2L 21355613 intron Tsp39D + chr2L 21355694 intron Tsp39D + chr2L 21355774 intron Tsp39D + chr2L_6_21355001 chr2L_21355001 RAL-380 430 chr2L 21597029 21597060 chr2L 21604773 21604804 roo 11 7743 3.0 4.5 3.8 2.3 7775 chr2L 21597029 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604804 intergenic not near genes chr2L_11_21600001 chr2L_21600001 RAL-380 431 chr2L 21691828 21691853 chr2L 21698297 21698323 Burdock 4 6468 0.5 1.0 0.8 2.2 6495 chr2L 21691828 intron CG31619 + chr2L 21695076 intron CG31619 + chr2L 21698323 intron CG31619 + chr2L_4_21695001 chr2L_21695001 RAL-380 432 chr2L 21754661 21754690 chr2L 21754741 21754771 6 80 1.0 3.0 2.0 2.0 110 chr2L 21754661 intron step - chr2L 21754716 intron step - chr2L 21754771 intron step - chr2L_6_21750001 chr2L_21750001 RAL-380 433 chr2L 21755496 21755522 chr2L 21755617 21755646 7 123 2.0 4.0 3.0 1.8 150 chr2L 21755496 intron step - chr2L 21755571 intron step - chr2L 21755646 intron step - chr2L_7_21755001 chr2L_21755001 RAL-380 434 chr2L 19024096 19024097 chr2L 21768294 21768294 5 2744198 22.5 26.0 24.2 0.2 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-380 435 chr2L 21787630 21787648 chr2L 21787711 21787730 5 81 3.0 0.5 1.8 1.8 100 chr2L 21787630 intron CG31612 - chr2L 21787680 intron CG31612 - chr2L 21787730 intron CG31612 - chr2L_5_21785001 chr2L_21785001 RAL-380 436 chr2L 21794481 21794503 chr2L 21794557 21794579 9 76 2.0 2.5 2.2 2.8 98 chr2L 21794481 intron CG31612 - chr2L 21794530 intron CG31612 - chr2L 21794579 intron CG31612 - chr2L_9_21790001 chr2L_21790001 RAL-380 437 chr2L 21806224 21806259 chr2L 21806326 21806362 10 103 4.0 1.5 2.8 2.6 138 chr2L 21806224 intergenic not near genes chr2L 21806293 intergenic not near genes chr2L 21806362 intergenic not near genes chr2L_10_21805001 chr2L_21805001 RAL-380 438 chr2L 21825149 21825180 chr2L 21825580 21825614 13 432 3.5 3.0 3.2 3.1 465 chr2L 21825149 intergenic not near genes chr2L 21825382 intergenic not near genes chr2L 21825614 intergenic not near genes chr2L_13_21825001 chr2L_21825001 RAL-380 439 chr2L 21836398 21836427 chr2L 21836487 21836517 7 89 2.0 4.5 3.2 1.7 119 chr2L 21836398 3` UTR tsh + chr2L 21836458 3` UTR tsh + chr2L 21836517 3` UTR tsh + chr2L_7_21835001 chr2L_21835001 RAL-380 440 chr2L 21898843 21898878 chr2L 21898971 21899006 7 127 2.5 5.0 3.8 1.5 163 chr2L 21898843 intergenic not near genes chr2L 21898924 intergenic not near genes chr2L 21899006 intergenic not near genes chr2L_7_21895001 chr2L_21895001 RAL-380 441 chr2L 21950925 21950947 chr2L 21951338 21951349 11 415 6.5 14.5 10.5 1.0 424 chr2L 21950925 5` UTR CR45703 + chr2L 21951137 5` UTR CR45703 + chr2L 21951349 intergenic CR45703 + chr2L_11_21950001 chr2L_21950001 RAL-380 442 chr2L 21981682 21981715 chr2L 21990847 21990880 roo 9 9164 2.5 6.5 4.5 1.6 9198 chr2L 21981682 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-380 443 chr2L 22192025 22192050 chr2L 22192113 22192139 13 89 5.5 2.5 4.0 2.6 114 chr2L 22192025 intron Ir40a - chr2L 22192082 intron Ir40a - chr2L 22192139 intron Ir40a - chr2L_13_22190001 chr2L_22190001 RAL-380 444 chr2L 22215911 22215938 chr2L 22215997 22216024 6 86 3.5 4.5 4.0 1.2 113 chr2L 22215911 intergenic not near genes chr2L 22215968 intergenic not near genes chr2L 22216024 intergenic not near genes chr2L_6_22215001 chr2L_22215001 RAL-380 445 chr2L 22345128 22345147 chr2L 22345395 22345414 6 266 0.5 0.5 0.5 4.0 286 chr2L 22345128 intron CG17018 + chr2L 22345271 intron CG17018 + chr2L 22345414 intron CG17018 + chr2L_6_22345001 chr2L_22345001 RAL-380 446 chr2L 22497641 22497645 chr2L 22497735 22497739 4 94 0.0 0.0 0.0 4.0 98 chr2L 22497641 intergenic not near genes chr2L 22497690 intergenic not near genes chr2L 22497739 intergenic not near genes chr2L_4_22495001 chr2L_22495001 RAL-380 447 chr2L 22534599 22534629 chr2L 22534700 22534730 8 101 2.0 1.5 1.8 2.9 131 chr2L 22534599 3` UTR RpL5 - chr2L 22534664 3` UTR RpL5 - chr2L 22534730 3` UTR RpL5 - chr2L_8_22530001 chr2L_22530001 RAL-380 448 chr2L 22537429 22537450 chr2L 22537615 22537636 5 186 4.5 4.0 4.2 1.0 207 chr2L 22537429 intergenic not near genes chr2L 22537532 intergenic not near genes chr2L 22537636 intergenic not near genes chr2L_5_22535001 chr2L_22535001 RAL-380 449 chr2L 22581971 22582002 chr2L 22583760 22583791 S-element 10 1786 3.0 1.5 2.2 3.1 1820 chr2L 22581971 intron CG17494 + chr2L 22582881 intron CG17494 + chr2L 22583791 intron CG17494 + chr2L_10_22580001 chr2L_22580001 RAL-380 450 chr2L 22674068 22674094 chr2L 22674145 22674171 14 77 1.5 1.5 1.5 5.6 103 chr2L 22674068 intron CG40006 - chr2L 22674120 intron CG40006 - chr2L 22674171 intron CG40006 - chr2L_14_22670001 chr2L_22670001 RAL-380 451 chr2L 22679802 22679824 chr2L 22684574 22684596 F-element 5 4772 2.5 5.0 3.8 1.0 4794 chr2L 22679802 intron CG40006 - chr2L 22682199 intron CG40006 - chr2L 22684596 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-380 452 chr2L 22696853 22696882 chr2L 22696935 22696963 9 79 4.5 4.5 4.5 1.6 110 chr2L 22696853 intron CG40006 - chr2L 22696908 intron CG40006 - chr2L 22696963 intron CG40006 - chr2L_9_22695001 chr2L_22695001 RAL-380 453 chr2L 22712206 22712225 chr2L 22963677 22963696 Cr1a 4 251470 19.0 11.0 15.0 0.2 251490 chr2L 22712206 intron CG40006 - chr2L 22837951 intergenic not near genes chr2L 22963696 intergenic not near genes chr2L_4_22835001 chr2L_22835001 RAL-380 454 chr2L 22750718 22750751 chr2L 22750808 22750840 6 89 1.0 2.5 1.8 2.1 122 chr2L 22750718 intron CG40006 - chr2L 22750779 intron CG40006 - chr2L 22750840 intron CG40006 - chr2L_6_22750001 chr2L_22750001 RAL-380 455 chr2L 22776420 22776452 chr2L 22778209 22778238 S-element 7 1788 3.5 2.0 2.8 1.8 1818 chr2L 22776420 intergenic not near genes chr2L 22777329 intergenic not near genes chr2L 22778238 intergenic not near genes chr2L_7_22775001 chr2L_22775001 RAL-380 456 chr2L 23168855 23168880 chr2L 23168931 23168937 8 73 4.5 7.5 6.0 1.1 82 chr2L 23168855 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168896 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168937 intron CG12567 - chr2L_8_23165001 chr2L_23165001 RAL-380 457 chr2R 529332 529350 chr2R 537957 537975 Max-element 6 8625 1.5 4.0 2.8 1.6 8643 chr2R 529332 intron CG40378 + chr2R 533654 intron CG40378 + chr2R 537975 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-380 458 chr2R 552764 552784 chr2R 553982 553990 1360 6 1214 3.0 4.0 3.5 1.3 1226 chr2R 552764 intron CG40378 + chr2R 553377 intron CG40378 + chr2R 553990 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-380 459 chr2R 552786 552789 chr2R 553978 553980 1360 4 1194 2.0 4.0 3.0 1.0 1194 chr2R 552786 intron CG40378 + chr2R 553383 intron CG40378 + chr2R 553980 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-380 460 chr2R 1082372 1082385 chr2R 1087126 1087161 Doc 8 4763 4.5 3.0 3.8 1.7 4789 chr2R 1082372 intron rl + chr2R 1084766 intron rl + chr2R 1087161 intron rl + chr2R_8_1080001 chr2R_1080001 RAL-380 461 chr2R 1320204 1320204 chr2R 21358403 21358403 4 20038199 12.5 5.5 9.0 0.4 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_4_11335001 chr2R_11335001 RAL-380 462 chr2R 1340062 1340077 chr2R 1340150 1340167 5 89 9.0 8.5 8.8 0.5 105 chr2R 1340062 intergenic not near genes chr2R 1340114 intergenic not near genes chr2R 1340167 intergenic not near genes chr2R_5_1340001 chr2R_1340001 RAL-380 463 chr2R 1365867 1365895 chr2R 1365979 1366003 12 111 5.5 4.0 4.8 2.1 136 chr2R 1365867 intron l(2)41Ab + chr2R 1365935 intron l(2)41Ab + chr2R 1366003 intron l(2)41Ab + chr2R_12_1365001 chr2R_1365001 RAL-380 464 chr2R 2015139 2015163 chr2R 2015211 2015240 6 76 3.0 1.5 2.2 1.9 101 chr2R 2015139 intron CG17684 - chr2R 2015190 intron CG17684 - chr2R 2015240 intron CG17684 - chr2R_6_2015001 chr2R_2015001 RAL-380 465 chr2R 2498996 2499018 chr2R 2508132 2508165 roo 7 9145 2.0 2.0 2.0 2.3 9169 chr2R 2498996 intron MFS17 - chr2R 2503580 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-380 466 chr2R 2508309 2508334 chr2R 2508447 2508472 6 137 4.5 2.0 3.2 1.4 163 chr2R 2508309 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508472 intron MFS17 - chr2R_6_2505001 chr2R_2505001 RAL-380 467 chr2R 3515295 3515308 chr2R 3515383 3515396 5 88 4.0 4.5 4.2 1.0 101 chr2R 3515295 intergenic not near genes chr2R 3515346 intergenic not near genes chr2R 3515396 intergenic not near genes chr2R_5_3515001 chr2R_3515001 RAL-380 468 chr2R 3532623 3532647 chr2R 3536066 3536085 Doc 4 3442 1.0 1.5 1.2 1.8 3462 chr2R 3532623 intergenic not near genes chr2R 3534354 intergenic not near genes chr2R 3536085 intergenic not near genes chr2R_4_3530001 chr2R_3530001 RAL-380 469 chr2R 3818932 3818943 chr2R 3819048 3819059 8 115 16.5 2.5 9.5 0.8 127 chr2R 3818932 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819059 intergenic not near genes chr2R_8_3815001 chr2R_3815001 RAL-380 470 chr2R 4312950 4312983 chr2R 4313034 4313067 9 84 5.0 4.0 4.5 1.6 117 chr2R 4312950 intergenic not near genes chr2R 4313008 intergenic not near genes chr2R 4313067 intergenic not near genes chr2R_9_4310001 chr2R_4310001 RAL-380 471 chr2R 4621317 4621345 chr2R 4621857 4621885 12 538 1.5 4.5 3.0 3.0 568 chr2R 4621317 3` UTR CR44101 - chr2R 4621601 3` UTR CR44101 - chr2R 4621885 3` UTR CR44101 - chr2R_12_4620001 chr2R_4620001 RAL-380 472 chr2R 4634640 4634658 chr2R 4634719 4634738 7 80 4.0 3.5 3.8 1.5 98 chr2R 4634640 intergenic not near genes chr2R 4634689 intergenic not near genes chr2R 4634738 intergenic not near genes chr2R_7_4630001 chr2R_4630001 RAL-380 473 chr2R 4745517 4745540 chr2R 4747121 4747144 10 1602 7.5 2.5 5.0 1.7 1627 chr2R 4745517 intron conu + chr2R 4746330 intron conu + chr2R 4747144 intron conu + chr2R_10_4745001 chr2R_4745001 RAL-380 474 chr2R 4782783 4782793 chr2R 4782882 4782894 5 100 0.5 5.5 3.0 1.2 111 chr2R 4782783 intergenic not near genes chr2R 4782838 intergenic not near genes chr2R 4782894 intergenic not near genes chr2R_5_4780001 chr2R_4780001 RAL-380 475 chr2R 4815769 4815797 chr2R 4815854 4815875 7 84 2.5 3.5 3.0 1.8 106 chr2R 4815769 3` UTR CG17528 - chr2R 4815822 3` UTR CG17528 - chr2R 4815875 3` UTR CG17528 - chr2R_7_4815001 chr2R_4815001 RAL-380 476 chr2R 4933360 4933391 chr2R 4933924 4933954 7 562 3.0 6.0 4.5 1.3 594 chr2R 4933360 intron Ir41a + chr2R 4933657 intron Ir41a + chr2R 4933954 intron Ir41a + chr2R_7_4930001 chr2R_4930001 RAL-380 477 chr2R 4938498 4938525 chr2R 4938634 4938661 13 134 6.5 3.5 5.0 2.2 163 chr2R 4938498 intron Ir41a + chr2R 4938580 intron Ir41a + chr2R 4938661 intron Ir41a + chr2R_13_4935001 chr2R_4935001 RAL-380 478 chr2R 4940965 4940978 chr2R 4943415 4943428 6 2450 1.0 0.5 0.8 3.3 2463 chr2R 4940965 intron Ir41a + chr2R 4942196 intron Ir41a + chr2R 4943428 intron Ir41a + chr2R_6_4940001 chr2R_4940001 RAL-380 479 chr2R 5080797 5080818 chr2R 5080888 5080908 5 91 2.5 5.0 3.8 1.0 111 chr2R 5080797 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080908 intergenic not near genes chr2R_5_5080001 chr2R_5080001 RAL-380 480 chr2R 5103049 5103068 chr2R 5103127 5103148 8 77 5.0 2.0 3.5 1.8 99 chr2R 5103049 intergenic not near genes chr2R 5103098 intergenic not near genes chr2R 5103148 intergenic not near genes chr2R_8_5100001 chr2R_5100001 RAL-380 481 chr2R 5125249 5125275 chr2R 5125564 5125592 5 316 1.5 3.0 2.2 1.6 343 chr2R 5125249 intron gus - chr2R 5125420 intron gus - chr2R 5125592 intron gus - chr2R_5_5125001 chr2R_5125001 RAL-380 482 chr2R 5209782 5209812 chr2R 5210313 5210345 10 532 5.0 3.5 4.2 1.9 563 chr2R 5209782 intron Nipped-A - chr2R 5210064 intron Nipped-A - chr2R 5210345 intron Nipped-A - chr2R_10_5210001 chr2R_5210001 RAL-380 483 chr2R 5256776 5256786 chr2R 5256847 5256858 6 82 6.5 3.5 5.0 1.0 82 chr2R 5256776 intergenic not near genes chr2R 5256817 intergenic not near genes chr2R 5256858 intergenic not near genes chr2R_6_5255001 chr2R_5255001 RAL-380 484 chr2R 5395894 5395916 chr2R 5395974 5395990 9 79 3.0 3.5 3.2 2.1 96 chr2R 5395894 intergenic not near genes chr2R 5395942 intergenic not near genes chr2R 5395990 intergenic not near genes chr2R_9_5395001 chr2R_5395001 RAL-380 485 chr2R 5415127 5415162 chr2R 5415209 5415242 6 81 2.0 1.0 1.5 2.4 115 chr2R 5415127 intron laccase2 + chr2R 5415184 intron laccase2 + chr2R 5415242 intron laccase2 + chr2R_6_5415001 chr2R_5415001 RAL-380 486 chr2R 5418001 5418023 chr2R 5420631 5420655 Burdock 9 2631 3.5 6.0 4.8 1.6 2654 chr2R 5418001 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420655 intron laccase2 + chr2R_9_5415001 chr2R_5415001 RAL-380 487 chr2R 5472369 5472390 chr2R 5472463 5472479 11 92 6.0 5.0 5.5 1.7 110 chr2R 5472369 intron CG30440 - chr2R 5472424 intron CG30440 - chr2R 5472479 intron CG30440 - chr2R_11_5470001 chr2R_5470001 RAL-380 488 chr2R 5475454 5475470 chr2R 5475718 5475734 7 264 2.5 1.5 2.0 2.3 280 chr2R 5475454 intron CG30440 - chr2R 5475594 intron CG30440 - chr2R 5475734 intron CG30440 - chr2R_7_5475001 chr2R_5475001 RAL-380 489 chr2R 5491661 5491689 chr2R 5491754 5491782 9 89 3.0 5.0 4.0 1.8 121 chr2R 5491661 intron CG30440 - chr2R 5491722 intron CG30440 - chr2R 5491782 intron CG30440 - chr2R_9_5490001 chr2R_5490001 RAL-380 490 chr2R 5581405 5581425 chr2R 5627605 5627634 8 46205 0.0 7.5 3.8 1.7 46229 chr2R 5581405 intergenic not near genes chr2R 5604520 intron Fis1 - chr2R 5627634 intergenic not near genes chr2R_8_5600001 chr2R_5600001 RAL-380 491 chr2R 5701760 5701782 chr2R 5701839 5701841 4 74 4.5 5.5 5.0 0.7 81 chr2R 5701760 intergenic vlc + chr2R 5701800 intergenic vlc + chr2R 5701841 intergenic vlc + chr2R_4_5700001 chr2R_5700001 RAL-380 492 chr2R 5741440 5741463 chr2R 5741526 5741550 4 87 0.5 3.0 1.8 1.4 110 chr2R 5741440 intergenic not near genes chr2R 5741495 intergenic not near genes chr2R 5741550 intergenic not near genes chr2R_4_5740001 chr2R_5740001 RAL-380 493 chr2R 5772535 5772638 chr2R 5772627 5772774 7 109 0.0 0.0 0.0 7.0 239 chr2R 5772535 3` UTR Gp210 + chr2R 5772654 3` UTR Gp210 + chr2R 5772774 3` UTR Gp210 + chr2R_7_5770001 chr2R_5770001 RAL-380 494 chr2R 5790466 5790496 chr2R 5790550 5790581 6 85 1.5 1.5 1.5 2.4 115 chr2R 5790466 intergenic not near genes chr2R 5790524 intergenic not near genes chr2R 5790581 intergenic not near genes chr2R_6_5790001 chr2R_5790001 RAL-380 495 chr2R 5859979 5860008 chr2R 5860091 5860096 5 107 6.5 3.0 4.8 0.9 117 chr2R 5859979 3` UTR dpr12 + chr2R 5860038 3` UTR dpr12 + chr2R 5860096 3` UTR dpr12 + chr2R_5_5860001 chr2R_5860001 RAL-380 496 chr2R 5869277 5869309 chr2R 5874353 5874383 flea 12 5076 3.5 2.0 2.8 3.2 5106 chr2R 5869277 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874383 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-380 497 chr2R 5876867 5876901 chr2R 5876969 5877001 13 99 6.0 2.5 4.2 2.5 134 chr2R 5876867 intergenic not near genes chr2R 5876934 intergenic not near genes chr2R 5877001 intergenic not near genes chr2R_13_5875001 chr2R_5875001 RAL-380 498 chr2R 5878928 5878952 chr2R 5879005 5879032 4 79 4.0 3.0 3.5 0.9 104 chr2R 5878928 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879032 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-380 499 chr2R 5885241 5885370 chr2R 5885324 5885499 5 101 3.0 3.0 3.0 1.2 258 chr2R 5885241 5` UTR CR44125 + chr2R 5885370 5` UTR CR44125 + chr2R 5885499 5` UTR CR44125 + chr2R_5_5885001 chr2R_5885001 RAL-380 500 chr2R 5902155 5902188 chr2R 5909714 5909747 17.6 9 7558 1.0 0.5 0.8 5.0 7592 chr2R 5902155 intron CG43366 + chr2R 5905951 intron CG43366 + chr2R 5909747 intron CG43366 + chr2R_9_5905001 chr2R_5905001 RAL-380 501 chr2R 6096714 6096749 chr2R 6101912 6101923 BS 9 5193 4.5 2.5 3.5 2.0 5209 chr2R 6096714 intron EcR - chr2R 6099318 intron EcR - chr2R 6101923 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-380 502 chr2R 6129328 6129357 chr2R 6129405 6129435 8 78 3.5 1.5 2.5 2.3 107 chr2R 6129328 intron EcR - chr2R 6129382 intron EcR - chr2R 6129435 intron EcR - chr2R_8_6125001 chr2R_6125001 RAL-380 503 chr2R 6541249 6541267 chr2R 6541353 6541371 4 104 2.0 1.5 1.8 1.4 122 chr2R 6541249 intron jing + chr2R 6541310 intron jing + chr2R 6541371 intron jing + chr2R_4_6540001 chr2R_6540001 RAL-380 504 chr2R 6546716 6546750 chr2R 6546817 6546851 11 99 3.0 4.0 3.5 2.4 135 chr2R 6546716 intron jing + chr2R 6546784 intron jing + chr2R 6546851 intron jing + chr2R_11_6545001 chr2R_6545001 RAL-380 505 chr2R 6607930 6607956 chr2R 6608032 6608057 8 102 2.0 4.0 3.0 2.0 127 chr2R 6607930 intron jing + chr2R 6607994 intron jing + chr2R 6608057 intron jing + chr2R_8_6605001 chr2R_6605001 RAL-380 506 chr2R 7009293 7009322 chr2R 7009627 7009653 9 334 6.0 1.5 3.8 1.9 360 chr2R 7009293 intergenic Tsp42Ed - chr2R 7009473 intergenic Tsp42Ed - chr2R 7009653 3` UTR Tsp42Ed - chr2R_9_7005001 chr2R_7005001 RAL-380 507 chr2R 7052053 7052065 chr2R 7052132 7052144 9 78 4.5 6.5 5.5 1.4 91 chr2R 7052053 intergenic lbm + chr2R 7052098 intergenic lbm + chr2R 7052144 intergenic lbm + chr2R_9_7050001 chr2R_7050001 RAL-380 508 chr2R 7064920 7064936 chr2R 7064996 7065012 4 76 6.5 0.0 3.2 1.0 92 chr2R 7064920 intron Tsp42Er + chr2R 7064966 intron Tsp42Er + chr2R 7065012 intron Tsp42Er + chr2R_4_7060001 chr2R_7060001 RAL-380 509 chr2R 7067605 7067624 chr2R 7067689 7067708 5 84 1.5 5.0 3.2 1.2 103 chr2R 7067605 intergenic not near genes chr2R 7067656 intergenic not near genes chr2R 7067708 intergenic not near genes chr2R_5_7065001 chr2R_7065001 RAL-380 510 chr2R 7101612 7101641 chr2R 7101707 7101736 10 94 5.0 3.0 4.0 2.0 124 chr2R 7101612 intron esn + chr2R 7101674 intron esn + chr2R 7101736 intron esn + chr2R_10_7100001 chr2R_7100001 RAL-380 511 chr2R 7171268 7171274 chr2R 7171354 7171360 5 86 6.5 8.5 7.5 0.6 92 chr2R 7171268 intron pk + chr2R 7171314 intron pk + chr2R 7171360 intron pk + chr2R_5_7170001 chr2R_7170001 RAL-380 512 chr2R 7235830 7235851 chr2R 7240922 7240943 jockey 8 5092 1.5 6.5 4.0 1.6 5113 chr2R 7235830 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-380 513 chr2R 7418147 7418169 chr2R 7418226 7418248 7 79 4.5 4.0 4.2 1.3 101 chr2R 7418147 intergenic not near genes chr2R 7418198 intergenic not near genes chr2R 7418248 intergenic not near genes chr2R_7_7415001 chr2R_7415001 RAL-380 514 chr2R 7434901 7434911 chr2R 7439202 7439212 Juan 4 4301 4.0 4.0 4.0 0.8 4311 chr2R 7434901 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439212 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-380 515 chr2R 7509966 7509997 chr2R 7510050 7510083 5 85 4.0 2.5 3.2 1.2 117 chr2R 7509966 exon CG12736 - chr2R 7510024 exon CG12736 - chr2R 7510083 exon CG12736 - chr2R_5_7510001 chr2R_7510001 RAL-380 516 chr2R 7608411 7608422 chr2R 7613614 7613618 I-element 5 5200 5.5 0.5 3.0 1.2 5207 chr2R 7608411 intron CG1358 - chr2R 7611014 intron CG1358 - chr2R 7613618 intron CG1358 - chr2R_5_7610001 chr2R_7610001 RAL-380 517 chr2R 7623815 7623836 chr2R 7624635 7624657 5 820 41.0 22.5 31.8 0.2 842 chr2R 7623815 intron CG43340 + chr2R 7624236 intron CG43340 + chr2R 7624657 intron CG43340 + chr2R_5_7620001 chr2R_7620001 RAL-380 518 chr2R 7692012 7692032 chr2R 7692092 7692113 7 81 3.0 4.0 3.5 1.6 101 chr2R 7692012 intron CG1399 - chr2R 7692062 intron CG1399 - chr2R 7692113 intron CG1399 - chr2R_7_7690001 chr2R_7690001 RAL-380 519 chr2R 7760288 7760297 chr2R 7760424 7760434 5 136 3.0 7.0 5.0 0.8 146 chr2R 7760288 intron,intron CG30497 -,CG45093 - chr2R 7760361 intron,intron CG30497 -,CG45093 - chr2R 7760434 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-380 520 chr2R 7760299 7760307 chr2R 7760422 7760431 5 131 2.5 6.5 4.5 0.9 132 chr2R 7760299 intron,intron CG30497 -,CG45093 - chr2R 7760365 intron,intron CG30497 -,CG45093 - chr2R 7760431 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-380 521 chr2R 7769737 7769758 chr2R 7769814 7769835 5 77 4.0 2.5 3.2 1.2 98 chr2R 7769737 intron,intron CG30497 -,CG45093 - chr2R 7769786 intron,intron CG30497 -,CG45093 - chr2R 7769835 intron,intron CG30497 -,CG45093 - chr2R_5_7765001 chr2R_7765001 RAL-380 522 chr2R 7815679 7815701 chr2R 7822144 7822170 Burdock 8 6468 5.0 2.5 3.8 1.7 6491 chr2R 7815679 intergenic CG1882 + chr2R 7818924 intergenic not near genes chr2R 7822170 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-380 523 chr2R 7869189 7869217 chr2R 7873975 7874001 Doc 8 4786 3.5 5.5 4.5 1.5 4812 chr2R 7869189 intron Dgk - chr2R 7871595 intron Dgk - chr2R 7874001 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-380 524 chr2R 8015650 8015682 chr2R 8017672 8017704 9 2017 1.5 5.0 3.2 2.1 2054 chr2R 8015650 intergenic mir-4981 + chr2R 8016677 intergenic not near genes chr2R 8017704 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-380 525 chr2R 8036031 8036052 chr2R 8036097 8036125 9 75 5.0 2.0 3.5 2.0 94 chr2R 8036031 intron Optix + chr2R 8036078 intron Optix + chr2R 8036125 intron Optix + chr2R_9_8035001 chr2R_8035001 RAL-380 526 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 8 90 6.0 10.5 8.2 0.9 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_8_8160001 chr2R_8160001 RAL-380 527 chr2R 8172823 8172849 chr2R 8172918 8172943 4 95 3.0 1.5 2.2 1.2 120 chr2R 8172823 intron CG14757 - chr2R 8172883 intron CG14757 - chr2R 8172943 intron CG14757 - chr2R_4_8170001 chr2R_8170001 RAL-380 528 chr2R 8209053 8209072 chr2R 8209137 8209156 9 83 8.5 2.0 5.2 1.5 103 chr2R 8209053 intron LRP1 + chr2R 8209104 intron LRP1 + chr2R 8209156 intron LRP1 + chr2R_9_8205001 chr2R_8205001 RAL-380 529 chr2R 8231695 8231730 chr2R 8231774 8231809 10 79 1.5 1.5 1.5 4.0 114 chr2R 8231695 intron dpn - chr2R 8231752 intron dpn - chr2R 8231809 intron dpn - chr2R_10_8230001 chr2R_8230001 RAL-380 530 chr2R 8330863 8330894 chr2R 8331349 8331380 roo 10 486 5.0 2.0 3.5 2.2 517 chr2R 8330863 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_10_8330001 chr2R_8330001 RAL-380 531 chr2R 8398212 8398241 chr2R 8402993 8403022 Doc 5 4781 2.0 2.5 2.2 1.6 4810 chr2R 8398212 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-380 532 chr2R 8468855 8468887 chr2R 8468970 8469002 12 112 4.0 4.0 4.0 2.4 147 chr2R 8468855 3` UTR Mal-A7 - chr2R 8468928 3` UTR Mal-A7 - chr2R 8469002 3` UTR Mal-A7 - chr2R_12_8465001 chr2R_8465001 RAL-380 533 chr2R 8483966 8483995 chr2R 8484042 8484071 6 75 1.0 3.0 2.0 2.0 105 chr2R 8483966 intron mtt - chr2R 8484018 intron mtt - chr2R 8484071 intron mtt - chr2R_6_8480001 chr2R_8480001 RAL-380 534 chr2R 8518799 8518963 chr2R 12066268 12066399 4 3547460 12.0 0.5 6.2 0.6 3547600 chr2R 8518799 intron mtt - chr2R 10292599 intron CAP + chr2R 12066399 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-380 535 chr2R 8612584 8612607 chr2R 8612661 8612684 4 77 2.0 1.5 1.8 1.4 100 chr2R 8612584 intron CG8642 - chr2R 8612634 intron CG8642 - chr2R 8612684 intron CG8642 - chr2R_4_8610001 chr2R_8610001 RAL-380 536 chr2R 8777916 8777939 chr2R 8784107 8784121 diver 4 6189 2.0 2.0 2.0 1.3 6205 chr2R 8777916 intergenic not near genes chr2R 8781018 intergenic not near genes chr2R 8784121 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-380 537 chr2R 9031975 9032013 chr2R 9032052 9032075 12 75 7.5 6.0 6.8 1.5 100 chr2R 9031975 intergenic not near genes chr2R 9032025 intergenic not near genes chr2R 9032075 intergenic not near genes chr2R_12_9030001 chr2R_9030001 RAL-380 538 chr2R 9053907 9053930 chr2R 9054234 9054256 5 321 31.5 33.5 32.5 0.1 349 chr2R 9053907 intron CG13743 - chr2R 9054082 intron CG13743 - chr2R 9054256 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-380 539 chr2R 9063371 9063392 chr2R 9063643 9063656 5 268 1.0 0.5 0.8 2.8 285 chr2R 9063371 intron ana + chr2R 9063514 intron ana + chr2R 9063656 intron ana + chr2R_5_9060001 chr2R_9060001 RAL-380 540 chr2R 9065917 9065936 chr2R 9065995 9066018 8 81 8.5 3.5 6.0 1.1 101 chr2R 9065917 intron ana + chr2R 9065968 intron ana + chr2R 9066018 intron ana + chr2R_8_9065001 chr2R_9065001 RAL-380 541 chr2R 9151303 9151335 chr2R 9157772 9157805 Burdock 9 6469 5.0 4.5 4.8 1.6 6502 chr2R 9151303 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_9_9150001 chr2R_9150001 RAL-380 542 chr2R 9212694 9212724 chr2R 9213179 9213210 roo 10 485 4.0 8.5 6.2 1.4 516 chr2R 9212694 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213210 5` UTR CR45309 + chr2R_10_9210001 chr2R_9210001 RAL-380 543 chr2R 9230230 9230238 chr2R 9230303 9230318 5 79 6.5 1.0 3.8 1.0 88 chr2R 9230230 intron hig - chr2R 9230274 intron hig - chr2R 9230318 exon hig - chr2R_5_9230001 chr2R_9230001 RAL-380 544 chr2R 9368129 9368152 chr2R 9368205 9368223 5 74 3.0 0.0 1.5 2.0 94 chr2R 9368129 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-380 545 chr2R 9391069 9391089 chr2R 9391616 9391648 10 558 2.5 4.5 3.5 2.2 579 chr2R 9391069 intron l(2)03659 + chr2R 9391358 exon l(2)03659 + chr2R 9391648 exon l(2)03659 + chr2R_10_9390001 chr2R_9390001 RAL-380 546 chr2R 9393372 9393394 chr2R 9394023 9394048 15 652 5.5 6.0 5.8 2.2 676 chr2R 9393372 exon l(2)03659 + chr2R 9393710 exon l(2)03659 + chr2R 9394048 exon l(2)03659 + chr2R_15_9390001 chr2R_9390001 RAL-380 547 chr2R 9466681 9466686 chr2R 9466754 9466766 4 76 3.0 2.0 2.5 1.1 85 chr2R 9466681 intron Camta + chr2R 9466724 intron Camta + chr2R 9466766 intron Camta + chr2R_4_9465001 chr2R_9465001 RAL-380 548 chr2R 9478490 9478509 chr2R 9478568 9478587 9 78 1.0 3.0 2.0 3.0 97 chr2R 9478490 intergenic Camta + chr2R 9478538 intergenic Camta + chr2R 9478587 intergenic Camta + chr2R_9_9475001 chr2R_9475001 RAL-380 549 chr2R 9480076 9480098 chr2R 9490607 9490626 roo 4 10530 2.0 3.0 2.5 1.1 10550 chr2R 9480076 intergenic not near genes chr2R 9485351 intergenic not near genes chr2R 9490626 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-380 550 chr2R 9687237 9687266 chr2R 9687319 9687334 7 80 7.0 3.0 5.0 1.2 97 chr2R 9687237 intergenic not near genes chr2R 9687286 intergenic not near genes chr2R 9687334 intergenic not near genes chr2R_7_9685001 chr2R_9685001 RAL-380 551 chr2R 9726613 9726644 chr2R 9734166 9734197 17.6 4 7552 3.0 3.5 3.2 1.0 7584 chr2R 9726613 intron sqa - chr2R 9730405 intron sqa - chr2R 9734197 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-380 552 chr2R 9776449 9776465 chr2R 9776548 9776564 9 98 4.5 4.5 4.5 1.6 115 chr2R 9776449 intron CG1688 - chr2R 9776506 intron CG1688 - chr2R 9776564 intron CG1688 - chr2R_9_9775001 chr2R_9775001 RAL-380 553 chr2R 9862768 9862790 chr2R 9862838 9862866 6 74 3.0 4.0 3.5 1.3 98 chr2R 9862768 intergenic not near genes chr2R 9862817 intergenic not near genes chr2R 9862866 intergenic not near genes chr2R_6_9860001 chr2R_9860001 RAL-380 554 chr2R 9871057 9871069 chr2R 9871529 9871555 roo 6 480 0.5 3.5 2.0 2.0 498 chr2R 9871057 intron cbx - chr2R 9871306 intron cbx - chr2R 9871555 intron,5` UTR cbx -,CG18446 + chr2R_6_9870001 chr2R_9870001 RAL-380 555 chr2R 9923858 9923871 chr2R 9923940 9923953 4 82 7.0 6.5 6.8 0.5 95 chr2R 9923858 intron Mef2 - chr2R 9923906 intron Mef2 - chr2R 9923953 intron Mef2 - chr2R_4_9920001 chr2R_9920001 RAL-380 556 chr2R 7071617 7071622 chr2R 9941238 9941243 5 2869621 11.0 18.0 14.5 0.3 2869626 chr2R 7071617 3` UTR CG12831 - chr2R 8506430 intron mtt - chr2R 9941243 intron Mef2 - chr2R_5_8505001 chr2R_8505001 RAL-380 557 chr2R 9945437 9945457 chr2R 9945632 9945653 BS 4 195 4.0 1.0 2.5 1.1 216 chr2R 9945437 intron Mef2 - chr2R 9945545 intron Mef2 - chr2R 9945653 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-380 558 chr2R 9945458 9945474 chr2R 9945627 9945670 BS 4 182 2.5 1.0 1.8 1.4 212 chr2R 9945458 intron Mef2 - chr2R 9945564 intron Mef2 - chr2R 9945670 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-380 559 chr2R 10005854 10005881 chr2R 10007013 10007018 1360 9 1156 4.0 4.0 4.0 1.8 1164 chr2R 10005854 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007018 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-380 560 chr2R 10122746 10122750 chr2R 10122953 10122960 4 209 3.5 5.0 4.2 0.8 214 chr2R 10122746 intergenic Ccs - chr2R 10122853 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-380 561 chr2R 10132201 10132216 chr2R 10132280 10132296 5 80 2.0 2.0 2.0 1.7 95 chr2R 10132201 intron gem + chr2R 10132248 intron gem + chr2R 10132296 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-380 562 chr2R 10168355 10168365 chr2R 10168432 10168440 4 76 2.5 2.5 2.5 1.1 85 chr2R 10168355 intron KCNQ - chr2R 10168398 intron KCNQ - chr2R 10168440 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-380 563 chr2R 10176128 10176143 chr2R 10176207 10176222 4 79 4.0 3.5 3.8 0.8 94 chr2R 10176128 intron KCNQ - chr2R 10176175 intron KCNQ - chr2R 10176222 intron KCNQ - chr2R_4_10175001 chr2R_10175001 RAL-380 564 chr2R 10176880 10176901 chr2R 10186047 10186068 roo 4 9166 1.5 2.0 1.8 1.4 9188 chr2R 10176880 intron KCNQ - chr2R 10181474 intron KCNQ - chr2R 10186068 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-380 565 chr2R 10216201 10216212 chr2R 10216279 10216290 5 78 5.5 3.0 4.2 1.0 89 chr2R 10216201 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216290 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-380 566 chr2R 10313313 10313333 chr2R 10313405 10313426 6 94 0.5 1.5 1.0 3.0 113 chr2R 10313313 intergenic not near genes chr2R 10313370 intergenic not near genes chr2R 10313426 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-380 567 chr2R 10318515 10318544 chr2R 10318601 10318630 7 86 4.0 4.0 4.0 1.4 115 chr2R 10318515 intron Ndg + chr2R 10318572 intron Ndg + chr2R 10318630 intron Ndg + chr2R_7_10315001 chr2R_10315001 RAL-380 568 chr2R 10352671 10352701 chr2R 10352748 10352777 8 76 3.5 3.5 3.5 1.8 106 chr2R 10352671 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352724 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-380 569 chr2R 10368979 10369010 chr2R 10369067 10369098 17 88 0.0 5.0 2.5 4.9 119 chr2R 10368979 intron CG42732 - chr2R 10369038 intron CG42732 - chr2R 10369098 intron CG42732 - chr2R_17_10365001 chr2R_10365001 RAL-380 570 chr2R 10387981 10388001 chr2R 10388076 10388098 5 94 1.0 4.0 2.5 1.4 117 chr2R 10387981 intron CG42732 - chr2R 10388040 intron CG42732 - chr2R 10388098 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-380 571 chr2R 10429024 10429046 chr2R 10429101 10429123 12 77 4.0 3.0 3.5 2.7 99 chr2R 10429024 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429123 intergenic not near genes chr2R_12_10425001 chr2R_10425001 RAL-380 572 chr2R 10432099 10432128 chr2R 10432177 10432203 4 77 3.0 1.0 2.0 1.3 104 chr2R 10432099 intron RanBPM + chr2R 10432151 intron RanBPM + chr2R 10432203 intron RanBPM + chr2R_4_10430001 chr2R_10430001 RAL-380 573 chr2R 10454098 10454128 chr2R 10454175 10454205 12 77 5.0 6.5 5.8 1.8 107 chr2R 10454098 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_12_10450001 chr2R_10450001 RAL-380 574 chr2R 10469032 10469039 chr2R 10469156 10469165 7 125 4.0 4.5 4.2 1.3 133 chr2R 10469032 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469165 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-380 575 chr2R 10469044 10469052 chr2R 10469152 10469178 6 121 3.5 3.5 3.5 1.3 134 chr2R 10469044 intron CG11777 + chr2R 10469111 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-380 576 chr2R 10476487 10476499 chr2R 10476547 10476555 5 67 5.0 2.0 3.5 1.1 68 chr2R 10476487 intron whd - chr2R 10476521 intron whd - chr2R 10476555 intron whd - chr2R_5_10475001 chr2R_10475001 RAL-380 577 chr2R 10527070 10527095 chr2R 10527147 10527172 7 76 7.0 3.0 5.0 1.2 102 chr2R 10527070 intron lola - chr2R 10527121 intron lola - chr2R 10527172 intron lola - chr2R_7_10525001 chr2R_10525001 RAL-380 578 chr2R 10551070 10551151 chr2R 10551161 10551271 4 113 1.0 0.5 0.8 2.2 201 chr2R 10551070 intergenic not near genes chr2R 10551170 intergenic not near genes chr2R 10551271 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-380 579 chr2R 10563264 10563555 chr2R 10563362 10563635 5 90 8.0 3.0 5.5 0.8 371 chr2R 10563264 intron psq + chr2R 10563450 intron psq + chr2R 10563635 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-380 580 chr2R 10563564 10563583 chr2R 10563640 10563646 4 74 4.0 2.5 3.2 1.0 82 chr2R 10563564 intron psq + chr2R 10563605 intron psq + chr2R 10563646 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-380 581 chr2R 10574625 10574646 chr2R 10574705 10574726 5 81 7.0 6.5 6.8 0.6 101 chr2R 10574625 intron psq + chr2R 10574676 intron psq + chr2R 10574726 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-380 582 chr2R 10656941 10656956 chr2R 10657039 10657053 6 97 1.5 9.5 5.5 0.9 112 chr2R 10656941 3` UTR CR44452 - chr2R 10656997 intron CR44452 - chr2R 10657053 intron CR44452 - chr2R_6_10655001 chr2R_10655001 RAL-380 583 chr2R 10770995 10771014 chr2R 10771076 10771095 8 79 4.5 3.0 3.8 1.7 100 chr2R 10770995 intron CG33144 - chr2R 10771045 intron CG33144 - chr2R 10771095 intron CG33144 - chr2R_8_10770001 chr2R_10770001 RAL-380 584 chr2R 10790141 10790175 chr2R 10790229 10790263 10 84 3.0 5.0 4.0 2.0 122 chr2R 10790141 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_10_10790001 chr2R_10790001 RAL-380 585 chr2R 10827337 10827361 chr2R 10827425 10827431 8 85 6.0 5.0 5.5 1.2 94 chr2R 10827337 exon CG12325 + chr2R 10827384 3` UTR CG12325 + chr2R 10827431 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_8_10825001 chr2R_10825001 RAL-380 586 chr2R 11009812 11009836 chr2R 11018986 11019010 roo 5 9169 3.0 5.0 4.0 1.0 9198 chr2R 11009812 intron luna - chr2R 11014411 intron luna - chr2R 11019010 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-380 587 chr2R 11019899 11019912 chr2R 11024945 11024978 jockey 4 5055 0.0 3.5 1.8 1.4 5079 chr2R 11019899 intron luna - chr2R 11022438 intron luna - chr2R 11024978 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-380 588 chr2R 11152619 11152627 chr2R 11152704 11152713 6 86 5.0 2.0 3.5 1.3 94 chr2R 11152619 intron CG13229 - chr2R 11152666 intron CG13229 - chr2R 11152713 intron CG13229 - chr2R_6_11150001 chr2R_11150001 RAL-380 589 chr2R 11194828 11194840 chr2R 11194944 11194951 7 115 5.5 1.5 3.5 1.6 123 chr2R 11194828 intron shn + chr2R 11194890 intron shn + chr2R 11194951 intron shn + chr2R_7_11190001 chr2R_11190001 RAL-380 590 chr2R 11207813 11207843 chr2R 11208005 11208035 BS 9 191 9.0 1.5 5.2 1.5 222 chr2R 11207813 intron shn + chr2R 11207924 intron shn + chr2R 11208035 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-380 591 chr2R 11344148 11344159 chr2R 11344244 11344255 4 96 0.0 5.5 2.8 1.1 107 chr2R 11344148 intergenic alphaTry - chr2R 11344202 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-380 592 chr2R 11472674 11472678 chr2R 11473871 11473875 pogo 4 1197 6.5 4.0 5.2 0.6 1201 chr2R 11472674 intergenic not near genes chr2R 11473274 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-380 593 chr2R 11538301 11538325 chr2R 11538401 11538425 14 100 2.5 6.0 4.2 2.7 124 chr2R 11538301 intergenic not near genes chr2R 11538363 intergenic not near genes chr2R 11538425 intergenic not near genes chr2R_14_11535001 chr2R_11535001 RAL-380 594 chr2R 11638688 11638716 chr2R 11638937 11638965 13 249 5.5 3.5 4.5 2.4 277 chr2R 11638688 intron CG9005 - chr2R 11638826 intron CG9005 - chr2R 11638965 intron CG9005 - chr2R_13_11635001 chr2R_11635001 RAL-380 595 chr2R 11793005 11793017 chr2R 11793090 11793102 6 85 4.0 0.0 2.0 2.0 97 chr2R 11793005 intron ths + chr2R 11793054 intron ths + chr2R 11793102 intron ths + chr2R_6_11790001 chr2R_11790001 RAL-380 596 chr2R 11861994 11862025 chr2R 11862075 11862110 8 84 2.0 1.0 1.5 3.2 116 chr2R 11861994 3` UTR CG34230 + chr2R 11862052 intergenic CG34230 +,TwdlBeta - chr2R 11862110 intergenic CG34230 +,TwdlBeta - chr2R_8_11860001 chr2R_11860001 RAL-380 597 chr2R 11928691 11928710 chr2R 11928769 11928788 5 76 0.5 4.0 2.2 1.6 97 chr2R 11928691 intergenic not near genes chr2R 11928740 intergenic not near genes chr2R 11928788 intergenic CR44312 - chr2R_5_11925001 chr2R_11925001 RAL-380 598 chr2R 8518780 8518785 chr2R 12066183 12066204 5 3547408 13.0 12.0 12.5 0.4 3547424 chr2R 8518780 intron mtt - chr2R 10292492 intron CAP + chr2R 12066204 intron CG8888 - chr2R_5_10290001 chr2R_10290001 RAL-380 599 chr2R 12096837 12096851 chr2R 12097289 12097302 4 452 4.0 3.5 3.8 0.8 465 chr2R 12096837 intron jeb - chr2R 12097070 intron jeb - chr2R 12097302 intron jeb - chr2R_4_12095001 chr2R_12095001 RAL-380 600 chr2R 12186005 12186037 chr2R 12186095 12186130 17 93 1.0 3.0 2.0 5.7 125 chr2R 12186005 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_17_12185001 chr2R_12185001 RAL-380 601 chr2R 12187471 12187507 chr2R 12190087 12190124 62 2621 154.0 96.0 125.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_62_12185001 chr2R_12185001 RAL-380 602 chr2R 12217577 12217600 chr2R 12217656 12217681 6 80 3.5 3.5 3.5 1.3 104 chr2R 12217577 intergenic not near genes chr2R 12217629 intergenic not near genes chr2R 12217681 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-380 603 chr2R 12301877 12301908 chr2R 12301954 12301960 10 72 3.5 9.5 6.5 1.3 83 chr2R 12301877 intron CG8850 - chr2R 12301918 intron CG8850 - chr2R 12301960 intron CG8850 - chr2R_10_12300001 chr2R_12300001 RAL-380 604 chr2R 12481147 12481170 chr2R 12482941 12482942 roo 6 1793 4.0 3.0 3.5 1.3 1795 chr2R 12481147 exon Dh44-R2 + chr2R 12482044 intron Dh44-R2 + chr2R 12482942 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-380 605 chr2R 12501700 12501722 chr2R 12503861 12503873 Rt1c 8 2159 6.5 7.5 7.0 1.0 2173 chr2R 12501700 intron fdl - chr2R 12502786 intron fdl - chr2R 12503873 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-380 606 chr2R 12739137 12739152 chr2R 12739213 12739228 4 76 5.0 4.0 4.5 0.7 91 chr2R 12739137 intron CG42663 + chr2R 12739182 intron CG42663 + chr2R 12739228 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-380 607 chr2R 12777809 12777827 chr2R 12777917 12777917 5 104 0.0 4.0 2.0 1.7 108 chr2R 12777809 5` UTR CR45266 + chr2R 12777863 5` UTR CR45266 + chr2R 12777917 5` UTR CR45266 + chr2R_5_12775001 chr2R_12775001 RAL-380 608 chr2R 12789298 12789314 chr2R 12797660 12797674 roo 5 8360 4.5 5.0 4.8 0.9 8376 chr2R 12789298 intron,3` UTR sca +,CR45137 - chr2R 12793486 intron,intron sca +,CR45137 - chr2R 12797674 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-380 609 chr2R 12819453 12819473 chr2R 12824520 12824542 jockey 6 5068 2.0 5.5 3.8 1.2 5089 chr2R 12819453 intergenic not near genes chr2R 12821998 intergenic not near genes chr2R 12824542 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-380 610 chr2R 12855601 12855627 chr2R 12855679 12855703 8 77 4.5 4.5 4.5 1.5 102 chr2R 12855601 intron CG17574 - chr2R 12855652 intron CG17574 - chr2R 12855703 intron CG17574 - chr2R_8_12855001 chr2R_12855001 RAL-380 611 chr2R 12871242 12871266 chr2R 12871317 12871342 10 75 5.5 2.5 4.0 2.0 100 chr2R 12871242 3` UTR bic + chr2R 12871292 3` UTR bic + chr2R 12871342 3` UTR bic + chr2R_10_12870001 chr2R_12870001 RAL-380 612 chr2R 12951678 12951687 chr2R 12951754 12951763 6 78 3.0 7.0 5.0 1.0 85 chr2R 12951678 intron,intron CG44251 -,CG44250 - chr2R 12951720 intron,intron CG44251 -,CG44250 - chr2R 12951763 intron,intron CG44251 -,CG44250 - chr2R_6_12950001 chr2R_12950001 RAL-380 613 chr2R 13017712 13017737 chr2R 13017802 13017827 8 90 2.0 1.0 1.5 3.2 115 chr2R 13017712 intergenic not near genes chr2R 13017770 intergenic not near genes chr2R 13017827 intergenic not near genes chr2R_8_13015001 chr2R_13015001 RAL-380 614 chr2R 13136841 13136870 chr2R 13141639 13141661 Doc 16 4795 3.0 3.5 3.2 3.8 4820 chr2R 13136841 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_16_13135001 chr2R_13135001 RAL-380 615 chr2R 13224308 13224339 chr2R 13224439 13224469 11 128 4.5 3.5 4.0 2.2 161 chr2R 13224308 intron,3` UTR Dp +,CR43918 - chr2R 13224388 intron,3` UTR Dp +,CR43918 - chr2R 13224469 intron Dp + chr2R_11_13220001 chr2R_13220001 RAL-380 616 chr2R 13431490 13431516 chr2R 13431568 13431595 12 79 4.0 2.0 3.0 3.0 105 chr2R 13431490 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431595 intron CG42321 - chr2R_12_13430001 chr2R_13430001 RAL-380 617 chr2R 13432935 13432963 chr2R 13433011 13433024 8 73 2.5 2.0 2.2 2.5 89 chr2R 13432935 intron CG42321 - chr2R 13432980 intron CG42321 - chr2R 13433024 intron CG42321 - chr2R_8_13430001 chr2R_13430001 RAL-380 618 chr2R 13439110 13439122 chr2R 13439225 13439235 4 114 4.0 2.0 3.0 1.0 125 chr2R 13439110 intergenic CG42321 -,cnn - chr2R 13439172 intergenic CG42321 -,cnn - chr2R 13439235 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-380 619 chr2R 13566257 13566290 chr2R 13566337 13566369 7 80 4.0 2.0 3.0 1.8 112 chr2R 13566257 intergenic not near genes chr2R 13566313 intergenic not near genes chr2R 13566369 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-380 620 chr2R 13569200 13569215 chr2R 13569274 13569287 5 74 1.5 0.5 1.0 2.5 87 chr2R 13569200 intergenic not near genes chr2R 13569244 intergenic not near genes chr2R 13569287 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-380 621 chr2R 13580497 13580533 chr2R 13580847 13580850 jockey 8 346 1.5 2.5 2.0 2.7 353 chr2R 13580497 3` UTR CG6191 - chr2R 13580674 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580850 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-380 622 chr2R 13589994 13590019 chr2R 13590094 13590119 8 101 22.5 26.0 24.2 0.3 125 chr2R 13589994 intron,intron CG6191 -,CG45088 - chr2R 13590056 intron,intron CG6191 -,CG45088 - chr2R 13590119 intron,intron CG6191 -,CG45088 - chr2R_8_13590001 chr2R_13590001 RAL-380 623 chr2R 13721211 13721218 chr2R 13721294 13721299 4 82 9.5 7.0 8.2 0.4 88 chr2R 13721211 intron fas + chr2R 13721255 intron fas + chr2R 13721299 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-380 624 chr2R 13728132 13728166 chr2R 13735789 13735823 opus 6 7656 1.0 0.5 0.8 3.3 7691 chr2R 13728132 intron fas + chr2R 13731978 intron fas + chr2R 13735823 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-380 625 chr2R 13768979 13769009 chr2R 13769077 13769108 9 97 2.5 6.0 4.2 1.7 129 chr2R 13768979 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-380 626 chr2R 13785642 13785673 chr2R 13785768 13785799 15 125 4.0 4.5 4.2 2.9 157 chr2R 13785642 intron Cpr50Ca + chr2R 13785720 intron Cpr50Ca + chr2R 13785799 intron Cpr50Ca + chr2R_15_13785001 chr2R_13785001 RAL-380 627 chr2R 13790332 13790342 chr2R 13790408 13790418 4 76 2.0 0.0 1.0 2.0 86 chr2R 13790332 intergenic not near genes chr2R 13790375 intergenic not near genes chr2R 13790418 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-380 628 chr2R 13905604 13905637 chr2R 13907581 13907619 Rt1a 11 1981 7.0 2.0 4.5 2.0 2015 chr2R 13905604 intron shot - chr2R 13906612 intron shot - chr2R 13907619 intron shot - chr2R_11_13905001 chr2R_13905001 RAL-380 629 chr2R 14037268 14037297 chr2R 14037351 14037379 4 82 0.0 1.0 0.5 2.7 111 chr2R 14037268 intron mam + chr2R 14037324 intron mam + chr2R 14037379 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-380 630 chr2R 14141985 14142063 chr2R 14142250 14142269 7 252 0.5 3.5 2.0 2.3 284 chr2R 14141985 intergenic not near genes chr2R 14142127 intergenic not near genes chr2R 14142269 intergenic not near genes chr2R_7_14140001 chr2R_14140001 RAL-380 631 chr2R 14213680 14213707 chr2R 14213789 14213806 4 106 2.0 3.0 2.5 1.1 126 chr2R 14213680 intergenic not near genes chr2R 14213743 intergenic not near genes chr2R 14213806 intergenic not near genes chr2R_4_14210001 chr2R_14210001 RAL-380 632 chr2R 14277586 14277609 chr2R 14277661 14277691 8 81 3.5 2.5 3.0 2.0 105 chr2R 14277586 5` UTR Ih + chr2R 14277638 5` UTR Ih + chr2R 14277691 5` UTR Ih + chr2R_8_14275001 chr2R_14275001 RAL-380 633 chr2R 14306111 14306135 chr2R 14306187 14306211 7 76 4.0 3.0 3.5 1.6 100 chr2R 14306111 intergenic not near genes chr2R 14306161 intergenic not near genes chr2R 14306211 intergenic not near genes chr2R_7_14305001 chr2R_14305001 RAL-380 634 chr2R 14378979 14379015 chr2R 14379443 14379479 12 464 3.0 3.0 3.0 3.0 500 chr2R 14378979 intron Dh44-R1 + chr2R 14379229 intron Dh44-R1 + chr2R 14379479 intron Dh44-R1 + chr2R_12_14375001 chr2R_14375001 RAL-380 635 chr2R 14386435 14386465 chr2R 14386522 14386549 12 86 2.0 1.5 1.8 4.3 114 chr2R 14386435 intergenic not near genes chr2R 14386492 intergenic not near genes chr2R 14386549 intergenic not near genes chr2R_12_14385001 chr2R_14385001 RAL-380 636 chr2R 14394229 14394248 chr2R 14399018 14399023 Doc 6 4786 2.0 4.0 3.0 1.5 4794 chr2R 14394229 intergenic not near genes chr2R 14396626 intergenic not near genes chr2R 14399023 intergenic not near genes chr2R_6_14395001 chr2R_14395001 RAL-380 637 chr2R 14467307 14467325 chr2R 14476464 14476483 roo 6 9158 2.0 3.5 2.8 1.6 9176 chr2R 14467307 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-380 638 chr2R 14565567 14565590 chr2R 14565635 14565667 5 75 2.0 2.5 2.2 1.6 100 chr2R 14565567 intron ttv + chr2R 14565617 intron ttv + chr2R 14565667 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-380 639 chr2R 14641413 14641443 chr2R 14641499 14641529 5 85 1.5 2.0 1.8 1.8 116 chr2R 14641413 intergenic not near genes chr2R 14641471 intergenic not near genes chr2R 14641529 intergenic not near genes chr2R_5_14640001 chr2R_14640001 RAL-380 640 chr2R 14673081 14673097 chr2R 14673201 14673215 10 120 6.0 0.5 3.2 2.4 134 chr2R 14673081 intron mspo - chr2R 14673148 intron mspo - chr2R 14673215 intron mspo - chr2R_10_14670001 chr2R_14670001 RAL-380 641 chr2R 14748862 14748882 chr2R 14748961 14748981 4 98 1.0 0.0 0.5 2.7 119 chr2R 14748862 intergenic AttB + chr2R 14748922 intergenic AttB + chr2R 14748981 intergenic AttB + chr2R_4_14745001 chr2R_14745001 RAL-380 642 chr2R 14786040 14786061 chr2R 14786133 14786154 6 93 0.0 4.5 2.2 1.9 114 chr2R 14786040 intron kn - chr2R 14786097 intron kn - chr2R 14786154 intron kn - chr2R_6_14785001 chr2R_14785001 RAL-380 643 chr2R 14799873 14799894 chr2R 14799949 14799970 7 76 0.5 5.0 2.8 1.8 97 chr2R 14799873 intron kn - chr2R 14799922 intron kn - chr2R 14799970 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-380 644 chr2R 14850057 14850085 chr2R 14850163 14850181 7 103 22.5 29.0 25.8 0.3 124 chr2R 14850057 exon SMC2 - chr2R 14850119 intron SMC2 - chr2R 14850181 exon SMC2 - chr2R_7_14850001 chr2R_14850001 RAL-380 645 chr2R 14889210 14889236 chr2R 14897818 14897844 Max-element 12 8608 7.0 0.0 3.5 2.7 8634 chr2R 14889210 intergenic Cyp6a8 - chr2R 14893527 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_12_14890001 chr2R_14890001 RAL-380 646 chr2R 14911702 14911728 chr2R 14911824 14911850 8 122 2.0 3.5 2.8 2.1 148 chr2R 14911702 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911850 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-380 647 chr2R 15004726 15004757 chr2R 15005055 15005084 jockey 5 328 3.5 5.0 4.2 1.0 358 chr2R 15004726 intergenic not near genes chr2R 15004905 intergenic not near genes chr2R 15005084 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-380 648 chr2R 15068181 15068205 chr2R 15068285 15068309 7 101 1.5 4.0 2.8 1.8 128 chr2R 15068181 intergenic not near genes chr2R 15068245 intergenic not near genes chr2R 15068309 intergenic not near genes chr2R_7_15065001 chr2R_15065001 RAL-380 649 chr2R 15094883 15094912 chr2R 15094960 15094989 7 77 1.5 2.5 2.0 2.3 106 chr2R 15094883 intergenic not near genes chr2R 15094936 intergenic not near genes chr2R 15094989 intergenic not near genes chr2R_7_15090001 chr2R_15090001 RAL-380 650 chr2R 15133442 15133460 chr2R 15133559 15133577 4 116 1.5 3.5 2.5 1.1 135 chr2R 15133442 intron chn + chr2R 15133510 intron chn + chr2R 15133577 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-380 651 chr2R 15137975 15138002 chr2R 15138055 15138084 4 80 2.0 0.0 1.0 2.0 109 chr2R 15137975 intron chn + chr2R 15138030 intron chn + chr2R 15138084 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-380 652 chr2R 15191427 15191445 chr2R 15191518 15191536 11 90 0.0 5.0 2.5 3.1 109 chr2R 15191427 intergenic not near genes chr2R 15191482 intergenic not near genes chr2R 15191536 intergenic not near genes chr2R_11_15190001 chr2R_15190001 RAL-380 653 chr2R 15196094 15196122 chr2R 15196190 15196218 12 96 6.5 5.5 6.0 1.7 124 chr2R 15196094 intergenic not near genes chr2R 15196156 intergenic not near genes chr2R 15196218 intergenic not near genes chr2R_12_15195001 chr2R_15195001 RAL-380 654 chr2R 15230386 15230390 chr2R 15231097 15231101 4 711 17.0 2.0 9.5 0.4 715 chr2R 15230386 intron,5` UTR Fs -,CR44370 + chr2R 15230744 intron,5` UTR Fs -,CR44370 + chr2R 15231101 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-380 655 chr2R 15252124 15252153 chr2R 15252197 15252208 7 72 3.0 1.5 2.2 2.2 84 chr2R 15252124 intron scb + chr2R 15252166 intron scb + chr2R 15252208 intron scb + chr2R_7_15250001 chr2R_15250001 RAL-380 656 chr2R 15530374 15530386 chr2R 15530459 15530475 6 88 4.5 7.0 5.8 0.9 101 chr2R 15530374 intron Khc-73 - chr2R 15530424 intron Khc-73 - chr2R 15530475 intron Khc-73 - chr2R_6_15530001 chr2R_15530001 RAL-380 657 chr2R 15685363 15685395 chr2R 15685465 15685498 5 101 5.5 3.5 4.5 0.9 135 chr2R 15685363 intron,exon Ranbp11 +,CG30082 - chr2R 15685430 intron,intron Ranbp11 +,CG30082 - chr2R 15685498 intron,intron Ranbp11 +,CG30082 - chr2R_5_15685001 chr2R_15685001 RAL-380 658 chr2R 15733939 15733971 chr2R 15734095 15734127 12 153 1.5 2.0 1.8 4.3 188 chr2R 15733939 intron CG30089 + chr2R 15734033 intron CG30089 + chr2R 15734127 intron CG30089 + chr2R_12_15730001 chr2R_15730001 RAL-380 659 chr2R 15740492 15740516 chr2R 15740562 15740574 10 71 3.0 5.0 4.0 2.0 82 chr2R 15740492 intron CG30089 + chr2R 15740533 intron CG30089 + chr2R 15740574 intron CG30089 + chr2R_10_15740001 chr2R_15740001 RAL-380 660 chr2R 15833521 15833552 chr2R 15833608 15833618 8 82 6.0 3.0 4.5 1.5 97 chr2R 15833521 intron,intron tun +,Poxn - chr2R 15833570 intron,intron tun +,Poxn - chr2R 15833618 intron,intron tun +,Poxn - chr2R_8_15830001 chr2R_15830001 RAL-380 661 chr2R 15930386 15930394 chr2R 15930463 15930464 5 75 7.5 0.0 3.8 1.0 78 chr2R 15930386 intron bdg - chr2R 15930425 intron bdg - chr2R 15930464 intron bdg - chr2R_5_15930001 chr2R_15930001 RAL-380 662 chr2R 16092480 16092515 chr2R 16092564 16092603 8 84 1.0 0.0 0.5 5.3 123 chr2R 16092480 intron Dg - chr2R 16092542 intron Dg - chr2R 16092603 intron Dg - chr2R_8_16090001 chr2R_16090001 RAL-380 663 chr2R 16245635 16245660 chr2R 16245723 16245748 14 87 2.5 2.0 2.2 4.4 113 chr2R 16245635 intron CngA - chr2R 16245692 intron CngA - chr2R 16245748 intron CngA - chr2R_14_16245001 chr2R_16245001 RAL-380 664 chr2R 16458025 16458048 chr2R 16458105 16458115 4 77 1.5 0.0 0.8 2.2 90 chr2R 16458025 intergenic not near genes chr2R 16458070 intergenic not near genes chr2R 16458115 intergenic not near genes chr2R_4_16455001 chr2R_16455001 RAL-380 665 chr2R 16518050 16518067 chr2R 16518125 16518143 7 75 4.0 3.5 3.8 1.5 93 chr2R 16518050 intron Sema-2a + chr2R 16518096 intron Sema-2a + chr2R 16518143 intron Sema-2a + chr2R_7_16515001 chr2R_16515001 RAL-380 666 chr2R 16539648 16539654 chr2R 16544857 16544863 copia 4 5208 3.0 2.0 2.5 1.1 5215 chr2R 16539648 intergenic not near genes chr2R 16542256 intergenic not near genes chr2R 16544863 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-380 667 chr2R 16571890 16571905 chr2R 16571985 16571999 10 95 3.0 4.5 3.8 2.1 109 chr2R 16571890 intergenic CG4927 + chr2R 16571944 intergenic CG4927 + chr2R 16571999 intergenic CG4927 + chr2R_10_16570001 chr2R_16570001 RAL-380 668 chr2R 16603280 16603310 chr2R 16603357 16603387 13 77 4.0 2.5 3.2 3.1 107 chr2R 16603280 intron CG8303 - chr2R 16603334 intron CG8303 - chr2R 16603387 intron CG8303 - chr2R_13_16600001 chr2R_16600001 RAL-380 669 chr2R 16737137 16737165 chr2R 16737237 16737265 12 98 5.0 2.5 3.8 2.5 128 chr2R 16737137 3` UTR CG43104 - chr2R 16737201 3` UTR CG43104 - chr2R 16737265 exon CG43104 - chr2R_12_16735001 chr2R_16735001 RAL-380 670 chr2R 16779518 16779533 chr2R 16779682 16779697 5 163 0.5 3.0 1.8 1.8 179 chr2R 16779518 intergenic resilin + chr2R 16779608 intergenic resilin + chr2R 16779697 intergenic resilin + chr2R_5_16775001 chr2R_16775001 RAL-380 671 chr2R 16799040 16799057 chr2R 16799120 16799137 4 80 3.5 1.0 2.2 1.2 97 chr2R 16799040 intergenic not near genes chr2R 16799088 intergenic not near genes chr2R 16799137 intergenic not near genes chr2R_4_16795001 chr2R_16795001 RAL-380 672 chr2R 16893784 16893805 chr2R 16893864 16893888 4 82 3.0 2.0 2.5 1.1 104 chr2R 16893784 intron CG8910 - chr2R 16893836 intron CG8910 - chr2R 16893888 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-380 673 chr2R 16921151 16921166 chr2R 16921379 16921394 7 228 3.0 2.5 2.8 1.8 243 chr2R 16921151 intergenic not near genes chr2R 16921272 intergenic not near genes chr2R 16921394 intergenic not near genes chr2R_7_16920001 chr2R_16920001 RAL-380 674 chr2R 16930310 16930341 chr2R 16930450 16930480 11 137 1.5 3.5 2.5 3.1 170 chr2R 16930310 intron Pkc53E + chr2R 16930395 intron Pkc53E + chr2R 16930480 intron Pkc53E + chr2R_11_16930001 chr2R_16930001 RAL-380 675 chr2R 16983377 16983389 chr2R 16983462 16983475 4 85 0.5 0.0 0.2 3.3 98 chr2R 16983377 intron Cbp53E + chr2R 16983426 intron Cbp53E + chr2R 16983475 intron Cbp53E + chr2R_4_16980001 chr2R_16980001 RAL-380 676 chr2R 17120287 17120316 chr2R 17120384 17120398 5 95 2.5 5.0 3.8 1.0 111 chr2R 17120287 5` UTR Amy-p - chr2R 17120342 intergenic Amy-p - chr2R 17120398 intergenic Amy-p - chr2R_5_17120001 chr2R_17120001 RAL-380 677 chr2R 17147244 17147269 chr2R 17152271 17152300 jockey 9 5030 3.0 3.5 3.2 2.1 5056 chr2R 17147244 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_9_17145001 chr2R_17145001 RAL-380 678 chr2R 17176355 17176385 chr2R 17182545 17182575 diver 7 6190 1.0 2.0 1.5 2.8 6220 chr2R 17176355 intergenic not near genes chr2R 17179465 intergenic not near genes chr2R 17182575 intergenic not near genes chr2R_7_17175001 chr2R_17175001 RAL-380 679 chr2R 17236507 17236541 chr2R 17241711 17241744 copia 15 5204 2.5 3.5 3.0 3.8 5237 chr2R 17236507 intron mbl + chr2R 17239126 intron mbl + chr2R 17241744 intron mbl + chr2R_15_17235001 chr2R_17235001 RAL-380 680 chr2R 17277237 17277242 chr2R 17277645 17277649 jockey 4 408 7.0 4.5 5.8 0.6 412 chr2R 17277237 intron mbl + chr2R 17277443 intron mbl + chr2R 17277649 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-380 681 chr2R 17299757 17299787 chr2R 17299960 17299966 4 198 2.5 2.5 2.5 1.1 209 chr2R 17299757 intron mbl + chr2R 17299862 intron mbl + chr2R 17299966 intron mbl + chr2R_4_17295001 chr2R_17295001 RAL-380 682 chr2R 17381591 17381614 chr2R 17381679 17381702 6 87 1.5 4.5 3.0 1.5 111 chr2R 17381591 intergenic not near genes chr2R 17381646 intergenic not near genes chr2R 17381702 intergenic not near genes chr2R_6_17380001 chr2R_17380001 RAL-380 683 chr2R 17439517 17439531 chr2R 17439574 17439588 7 53 7.0 3.5 5.2 1.1 71 chr2R 17439517 intron EDTP - chr2R 17439552 intron EDTP - chr2R 17439588 intron EDTP - chr2R_7_17435001 chr2R_17435001 RAL-380 684 chr2R 17459005 17459038 chr2R 17459090 17459122 13 85 5.5 3.5 4.5 2.4 117 chr2R 17459005 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459122 intron CG14478 + chr2R_13_17455001 chr2R_17455001 RAL-380 685 chr2R 17461292 17461318 chr2R 17461449 17461451 6 154 2.5 5.5 4.0 1.2 159 chr2R 17461292 intron CG14478 + chr2R 17461372 intron CG14478 + chr2R 17461451 intron CG14478 + chr2R_6_17460001 chr2R_17460001 RAL-380 686 chr2R 17470336 17470346 chr2R 17470416 17470426 4 80 1.5 1.0 1.2 1.8 90 chr2R 17470336 intron qkr54B + chr2R 17470381 intron qkr54B + chr2R 17470426 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-380 687 chr2R 17485914 17485937 chr2R 17490676 17490689 F-element 9 4759 8.0 0.0 4.0 1.8 4775 chr2R 17485914 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488302 intron NT5E-2 + chr2R 17490689 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-380 688 chr2R 17616978 17617013 chr2R 17617055 17617091 12 77 5.0 5.5 5.2 1.9 113 chr2R 17616978 intron,3` UTR CG10936 -,CG44403 - chr2R 17617034 intron,3` UTR CG10936 -,CG44403 - chr2R 17617091 intron,3` UTR CG10936 -,CG44403 - chr2R_12_17615001 chr2R_17615001 RAL-380 689 chr2R 17627749 17627783 chr2R 17628075 17628110 13 326 3.5 5.5 4.5 2.4 361 chr2R 17627749 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628110 intron CG10936 - chr2R_13_17625001 chr2R_17625001 RAL-380 690 chr2R 17708400 17708422 chr2R 17708481 17708503 4 81 2.0 2.5 2.2 1.2 103 chr2R 17708400 intron CG6424 - chr2R 17708452 intron CG6424 - chr2R 17708503 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-380 691 chr2R 17760674 17760701 chr2R 17760801 17760828 6 127 2.0 5.5 3.8 1.2 154 chr2R 17760674 intergenic HLH54F +,CG5009 + chr2R 17760751 intergenic CG5009 +,HLH54F + chr2R 17760828 intergenic CG5009 +,HLH54F + chr2R_6_17760001 chr2R_17760001 RAL-380 692 chr2R 17784025 17784054 chr2R 17784266 17784277 pogo 10 238 8.5 6.0 7.2 1.2 252 chr2R 17784025 intergenic mir-31a - chr2R 17784151 intergenic mir-31a - chr2R 17784277 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-380 693 chr2R 17807933 17807968 chr2R 17808019 17808066 7 93 2.0 1.5 1.8 2.5 133 chr2R 17807933 intron grh + chr2R 17808000 intron grh + chr2R 17808066 intron grh + chr2R_7_17805001 chr2R_17805001 RAL-380 694 chr2R 17846782 17846811 chr2R 17846863 17846895 7 83 2.0 4.0 3.0 1.8 113 chr2R 17846782 intron,5` UTR olf186-F +,olf186-M + chr2R 17846838 intron,5` UTR olf186-F +,olf186-M + chr2R 17846895 intron,5` UTR olf186-F +,olf186-M + chr2R_7_17845001 chr2R_17845001 RAL-380 695 chr2R 17860172 17860202 chr2R 17860254 17860281 5 81 1.5 1.0 1.2 2.3 109 chr2R 17860172 3` UTR olf186-F + chr2R 17860226 3` UTR olf186-F + chr2R 17860281 3` UTR olf186-F + chr2R_5_17860001 chr2R_17860001 RAL-380 696 chr2R 17918168 17918193 chr2R 17918245 17918264 10 75 4.5 2.5 3.5 2.2 96 chr2R 17918168 intron Elk + chr2R 17918216 intron Elk + chr2R 17918264 intron Elk + chr2R_10_17915001 chr2R_17915001 RAL-380 697 chr2R 18045672 18045686 chr2R 18046022 18046038 jockey 6 352 4.5 1.5 3.0 1.5 366 chr2R 18045672 intergenic not near genes chr2R 18045855 intergenic not near genes chr2R 18046038 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-380 698 chr2R 18050085 18050114 chr2R 18053591 18053620 5 3507 19.0 13.5 16.2 0.3 3535 chr2R 18050085 3` UTR Muc55B - chr2R 18051852 exon Muc55B - chr2R 18053620 intron CG10911 - chr2R_5_18050001 chr2R_18050001 RAL-380 699 chr2R 18358394 18358407 chr2R 18372606 18372617 roo 4 14212 4.5 0.0 2.2 1.2 14223 chr2R 18358394 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372617 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-380 700 chr2R 18575812 18575828 chr2R 18581987 18582015 3S18 12 6183 1.5 2.5 2.0 4.0 6203 chr2R 18575812 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_12_18575001 chr2R_18575001 RAL-380 701 chr2R 18590866 18590897 chr2R 18600018 18600041 roo 13 9151 3.5 3.5 3.5 2.9 9175 chr2R 18590866 intron GEFmeso - chr2R 18595454 intron GEFmeso - chr2R 18600041 intron GEFmeso - chr2R_13_18595001 chr2R_18595001 RAL-380 702 chr2R 18608636 18608656 chr2R 18608711 18608719 4 72 4.5 2.5 3.5 0.9 83 chr2R 18608636 intron GEFmeso - chr2R 18608678 intron GEFmeso - chr2R 18608719 intron GEFmeso - chr2R_4_18605001 chr2R_18605001 RAL-380 703 chr2R 18785925 18785948 chr2R 18786001 18786027 10 78 2.5 5.5 4.0 2.0 102 chr2R 18785925 intron CG15080 + chr2R 18785976 intron CG15080 + chr2R 18786027 intron CG15080 + chr2R_10_18785001 chr2R_18785001 RAL-380 704 chr2R 18808155 18808188 chr2R 18808231 18808264 4 76 1.5 1.5 1.5 1.6 109 chr2R 18808155 intergenic CG15096 - chr2R 18808210 intergenic CG15096 - chr2R 18808264 intergenic CG15096 - chr2R_4_18805001 chr2R_18805001 RAL-380 705 chr2R 18812088 18812112 chr2R 18812154 18812169 10 71 1.5 1.5 1.5 4.0 81 chr2R 18812088 intron CG15096 - chr2R 18812128 intron CG15096 - chr2R 18812169 intron CG15096 - chr2R_10_18810001 chr2R_18810001 RAL-380 706 chr2R 18868268 18868294 chr2R 18868410 18868435 7 140 1.5 2.0 1.8 2.5 167 chr2R 18868268 intergenic CG43109 -,DptB + chr2R 18868352 intergenic CG43109 -,DptB + chr2R 18868435 intergenic CG43109 - chr2R_7_18865001 chr2R_18865001 RAL-380 707 chr2R 18900715 18900728 chr2R 18901021 18901034 5 306 1.5 7.0 4.2 1.0 319 chr2R 18900715 intron sano + chr2R 18900874 intron sano + chr2R 18901034 intron sano + chr2R_5_18900001 chr2R_18900001 RAL-380 708 chr2R 18930451 18930484 chr2R 18930544 18930577 8 93 2.5 2.0 2.2 2.5 126 chr2R 18930451 intron sano + chr2R 18930514 intron sano + chr2R 18930577 intron sano + chr2R_8_18930001 chr2R_18930001 RAL-380 709 chr2R 18953160 18953192 chr2R 18953246 18953279 6 86 0.5 1.5 1.0 3.0 119 chr2R 18953160 intron sano + chr2R 18953220 intron sano + chr2R 18953279 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-380 710 chr2R 18964919 18964947 chr2R 18964995 18965022 10 76 2.5 1.5 2.0 3.3 103 chr2R 18964919 intergenic not near genes chr2R 18964970 intergenic not near genes chr2R 18965022 intergenic not near genes chr2R_10_18960001 chr2R_18960001 RAL-380 711 chr2R 19026048 19026056 chr2R 19026149 19026157 5 100 5.5 1.0 3.2 1.2 109 chr2R 19026048 intron 5-HT1B - chr2R 19026102 intron 5-HT1B - chr2R 19026157 intron 5-HT1B - chr2R_5_19025001 chr2R_19025001 RAL-380 712 chr2R 19104889 19104908 chr2R 19104994 19105013 5 105 2.5 1.5 2.0 1.7 124 chr2R 19104889 intron 5-HT1A + chr2R 19104951 intron 5-HT1A + chr2R 19105013 intron 5-HT1A + chr2R_5_19100001 chr2R_19100001 RAL-380 713 chr2R 19175400 19175432 chr2R 19175639 19175671 10 237 3.5 1.5 2.5 2.9 271 chr2R 19175400 intron CG10737 + chr2R 19175536 intron CG10737 + chr2R 19175671 intron CG10737 + chr2R_10_19175001 chr2R_19175001 RAL-380 714 chr2R 19300966 19300994 chr2R 19301049 19301077 12 83 3.0 5.0 4.0 2.4 111 chr2R 19300966 intron Tab2 + chr2R 19301022 intron Tab2 + chr2R 19301077 intron Tab2 + chr2R_12_19300001 chr2R_19300001 RAL-380 715 chr2R 19363190 19363202 chr2R 19363266 19363278 4 76 0.0 0.0 0.0 4.0 88 chr2R 19363190 intergenic CG10051 + chr2R 19363234 intergenic CG10051 + chr2R 19363278 intergenic CG10051 + chr2R_4_19360001 chr2R_19360001 RAL-380 716 chr2R 19522646 19522675 chr2R 19522725 19522754 6 79 2.0 1.5 1.8 2.1 108 chr2R 19522646 3` UTR sm - chr2R 19522700 3` UTR sm - chr2R 19522754 3` UTR sm - chr2R_6_19520001 chr2R_19520001 RAL-380 717 chr2R 19572183 19572212 chr2R 19572266 19572295 8 82 2.5 4.0 3.2 1.9 112 chr2R 19572183 intron sm - chr2R 19572239 intron sm - chr2R 19572295 intron sm - chr2R_8_19570001 chr2R_19570001 RAL-380 718 chr2R 19701520 19701543 chr2R 19701604 19701608 6 79 2.0 1.5 1.8 2.1 88 chr2R 19701520 intergenic Obp56c - chr2R 19701564 intergenic Obp56c - chr2R 19701608 intergenic Obp56c - chr2R_6_19700001 chr2R_19700001 RAL-380 719 chr2R 19714704 19714733 chr2R 19714780 19714809 10 76 0.5 0.5 0.5 6.7 105 chr2R 19714704 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714809 3` UTR CG8517 + chr2R_10_19710001 chr2R_19710001 RAL-380 720 chr2R 19774013 19774042 chr2R 19774126 19774155 4 112 2.5 1.5 2.0 1.3 142 chr2R 19774013 intergenic not near genes chr2R 19774084 intergenic not near genes chr2R 19774155 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-380 721 chr2R 19776596 19776613 chr2R 19779918 19779936 jockey 9 3321 4.0 3.0 3.5 2.0 3340 chr2R 19776596 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779936 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-380 722 chr2R 19776614 19776630 chr2R 19779917 19779952 jockey 10 3320 2.5 3.0 2.8 2.6 3338 chr2R 19776614 intergenic not near genes chr2R 19778283 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-380 723 chr2R 19909472 19909506 chr2R 19909551 19909585 7 78 2.5 1.0 1.8 2.5 113 chr2R 19909472 intergenic CR44573 - chr2R 19909528 intergenic CR44573 - chr2R 19909585 intergenic CR44573 - chr2R_7_19905001 chr2R_19905001 RAL-380 724 chr2R 19914842 19914871 chr2R 19922254 19922283 mdg1 7 7412 5.5 1.5 3.5 1.6 7441 chr2R 19914842 intergenic not near genes chr2R 19918562 intergenic not near genes chr2R 19922283 intergenic not near genes chr2R_7_19915001 chr2R_19915001 RAL-380 725 chr2R 19957441 19957464 chr2R 19962643 19962665 copia 4 5198 2.0 2.0 2.0 1.3 5224 chr2R 19957441 intergenic CG44623 + chr2R 19960053 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-380 726 chr2R 20017440 20017462 chr2R 20017716 20017739 5 275 1.0 5.0 3.0 1.2 299 chr2R 20017440 intergenic CR44630 - chr2R 20017590 intergenic CR44630 - chr2R 20017739 intergenic not near genes chr2R_5_20015001 chr2R_20015001 RAL-380 727 chr2R 20047235 20047241 chr2R 20047328 20047335 4 94 4.5 2.0 3.2 1.0 100 chr2R 20047235 intergenic not near genes chr2R 20047285 intergenic not near genes chr2R 20047335 intergenic not near genes chr2R_4_20045001 chr2R_20045001 RAL-380 728 chr2R 20080601 20080616 chr2R 20080677 20080688 9 76 0.0 4.5 2.2 2.8 87 chr2R 20080601 intergenic not near genes chr2R 20080644 intergenic not near genes chr2R 20080688 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-380 729 chr2R 20125736 20125742 chr2R 20125812 20125815 4 75 2.5 2.5 2.5 1.1 79 chr2R 20125736 intergenic not near genes chr2R 20125776 intergenic not near genes chr2R 20125815 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-380 730 chr2R 20199647 20199680 chr2R 20199777 20199810 4 130 0.5 3.0 1.8 1.4 163 chr2R 20199647 intergenic not near genes chr2R 20199728 intergenic not near genes chr2R 20199810 intergenic not near genes chr2R_4_20195001 chr2R_20195001 RAL-380 731 chr2R 20223959 20223976 chr2R 20224044 20224061 5 85 9.0 0.5 4.8 0.9 102 chr2R 20223959 intergenic not near genes chr2R 20224010 intergenic not near genes chr2R 20224061 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-380 732 chr2R 20382343 20382352 chr2R 20382422 20382437 5 83 7.0 2.5 4.8 0.9 94 chr2R 20382343 intergenic not near genes chr2R 20382390 intergenic not near genes chr2R 20382437 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-380 733 chr2R 20486767 20486795 chr2R 20490810 20490839 12 4049 24.5 28.0 26.2 0.4 4072 chr2R 20486767 intergenic not near genes chr2R 20488803 intergenic not near genes chr2R 20490839 intergenic CR44643 - chr2R_12_20485001 chr2R_20485001 RAL-380 734 chr2R 20506222 20506242 chr2R 20506314 20506347 5 101 4.5 3.5 4.0 1.0 125 chr2R 20506222 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506284 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506347 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_5_20505001 chr2R_20505001 RAL-380 735 chr2R 20523044 20523070 chr2R 20523152 20523181 12 107 5.0 3.0 4.0 2.4 137 chr2R 20523044 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_12_20520001 chr2R_20520001 RAL-380 736 chr2R 20541986 20542012 chr2R 20542064 20542090 9 77 2.0 4.0 3.0 2.2 104 chr2R 20541986 intergenic not near genes chr2R 20542038 intergenic not near genes chr2R 20542090 intergenic not near genes chr2R_9_20540001 chr2R_20540001 RAL-380 737 chr2R 20694746 20694754 chr2R 20695019 20695027 5 274 0.0 9.0 4.5 0.9 281 chr2R 20694746 intergenic not near genes chr2R 20694886 intergenic not near genes chr2R 20695027 intergenic not near genes chr2R_5_20690001 chr2R_20690001 RAL-380 738 chr2R 20739441 20739464 chr2R 20744209 20744232 F-element 5 4765 5.5 2.5 4.0 1.0 4791 chr2R 20739441 intron dpr + chr2R 20741836 intron dpr + chr2R 20744232 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-380 739 chr2R 20774421 20774443 chr2R 20774499 20774518 4 77 8.0 3.5 5.8 0.6 97 chr2R 20774421 exon CG13443 + chr2R 20774470 exon CG13443 + chr2R 20774518 exon CG13443 + chr2R_4_20770001 chr2R_20770001 RAL-380 740 chr2R 20783312 20783333 chr2R 20788084 20788105 F-element 5 4772 2.0 3.0 2.5 1.4 4793 chr2R 20783312 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-380 741 chr2R 20833027 20833050 chr2R 20833109 20833133 14 78 2.0 7.0 4.5 2.5 106 chr2R 20833027 intron,intron insc -,sktl - chr2R 20833080 intron,intron insc -,sktl - chr2R 20833133 intron,intron insc -,sktl - chr2R_14_20830001 chr2R_20830001 RAL-380 742 chr2R 20863119 20863139 chr2R 20863205 20863220 5 83 3.5 4.5 4.0 1.0 101 chr2R 20863119 intergenic not near genes chr2R 20863170 intergenic not near genes chr2R 20863220 intergenic not near genes chr2R_5_20860001 chr2R_20860001 RAL-380 743 chr2R 20962909 20962936 chr2R 20963007 20963032 14 98 4.5 5.0 4.8 2.4 123 chr2R 20962909 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963032 intergenic not near genes chr2R_14_20960001 chr2R_20960001 RAL-380 744 chr2R 20967027 20967039 chr2R 20967104 20967116 4 77 10.0 6.5 8.2 0.4 89 chr2R 20967027 intergenic not near genes chr2R 20967072 intergenic not near genes chr2R 20967116 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-380 745 chr2R 21060637 21060654 chr2R 21060713 21060729 6 76 2.5 3.5 3.0 1.5 92 chr2R 21060637 intergenic CG15653 -,mRpL54 + chr2R 21060683 intergenic mRpL54 +,CG15653 - chr2R 21060729 intergenic mRpL54 +,CG15653 - chr2R_6_21060001 chr2R_21060001 RAL-380 746 chr2R 21505767 21505795 chr2R 21505846 21505876 8 78 2.5 3.0 2.8 2.1 109 chr2R 21505767 intron MESK2 + chr2R 21505822 intron MESK2 + chr2R 21505876 intron MESK2 + chr2R_8_21505001 chr2R_21505001 RAL-380 747 chr2R 21592846 21592856 chr2R 21592929 21592938 5 81 10.5 5.5 8.0 0.6 92 chr2R 21592846 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592938 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-380 748 chr2R 21642004 21642022 chr2R 21642085 21642092 5 79 2.5 2.5 2.5 1.4 88 chr2R 21642004 intergenic not near genes chr2R 21642048 intergenic not near genes chr2R 21642092 intergenic not near genes chr2R_5_21640001 chr2R_21640001 RAL-380 749 chr2R 21753087 21753114 chr2R 21753568 21753598 roo 8 482 5.0 2.5 3.8 1.7 511 chr2R 21753087 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_8_21750001 chr2R_21750001 RAL-380 750 chr2R 21796460 21796472 chr2R 21796543 21796556 4 82 4.5 5.0 4.8 0.7 96 chr2R 21796460 5` UTR CG34204 + chr2R 21796508 5` UTR CG34204 + chr2R 21796556 exon CG34204 + chr2R_4_21795001 chr2R_21795001 RAL-380 751 chr2R 21809524 21809557 chr2R 21817763 21817797 roo 11 8239 0.5 2.5 1.5 4.4 8273 chr2R 21809524 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-380 752 chr2R 21848757 21848778 chr2R 21848835 21848856 7 75 3.5 2.5 3.0 1.8 99 chr2R 21848757 intergenic not near genes chr2R 21848806 intergenic not near genes chr2R 21848856 intergenic not near genes chr2R_7_21845001 chr2R_21845001 RAL-380 753 chr2R 21857347 21857370 chr2R 21857437 21857451 7 89 3.5 3.0 3.2 1.7 104 chr2R 21857347 intergenic not near genes chr2R 21857399 intergenic not near genes chr2R 21857451 intergenic not near genes chr2R_7_21855001 chr2R_21855001 RAL-380 754 chr2R 21878733 21879028 chr2R 21878811 21879095 7 80 2.0 2.5 2.2 2.2 362 chr2R 21878733 intron Fili + chr2R 21878914 intron Fili + chr2R 21879095 intron Fili + chr2R_7_21875001 chr2R_21875001 RAL-380 755 chr2R 22020602 22020617 chr2R 22020668 22020673 6 71 5.5 7.0 6.2 0.8 71 chr2R 22020602 intron CG34370 - chr2R 22020638 intron CG34370 - chr2R 22020673 intron CG34370 - chr2R_6_22020001 chr2R_22020001 RAL-380 756 chr2R 22040155 22040188 chr2R 22040235 22040242 5 74 4.0 6.5 5.2 0.8 87 chr2R 22040155 intergenic not near genes chr2R 22040198 intergenic not near genes chr2R 22040242 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-380 757 chr2R 22185694 22185707 chr2R 22185793 22185806 7 99 1.0 0.5 0.8 3.9 112 chr2R 22185694 3` UTR MED16 + chr2R 22185750 3` UTR MED16 + chr2R 22185806 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-380 758 chr2R 22248853 22248864 chr2R 22248919 22248919 5 70 12.5 13.0 12.8 0.4 66 chr2R 22248853 intron dve + chr2R 22248886 intron dve + chr2R 22248919 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-380 759 chr2R 22290083 22290101 chr2R 22290165 22290185 5 83 4.5 3.0 3.8 1.0 102 chr2R 22290083 intergenic not near genes chr2R 22290134 intergenic not near genes chr2R 22290185 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-380 760 chr2R 22349696 22349725 chr2R 22351474 22351478 jockey 12 1780 4.0 3.0 3.5 2.7 1782 chr2R 22349696 intron Liprin-gamma - chr2R 22350587 intron Liprin-gamma - chr2R 22351478 intron Liprin-gamma - chr2R_12_22350001 chr2R_22350001 RAL-380 761 chr2R 22360380 22360398 chr2R 22360813 22360830 jockey 9 432 6.0 3.0 4.5 1.6 450 chr2R 22360380 intron Liprin-gamma - chr2R 22360605 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_9_22360001 chr2R_22360001 RAL-380 762 chr2R 22362976 22362994 chr2R 22363122 22363140 5 146 4.0 6.5 5.2 0.8 164 chr2R 22362976 intron Liprin-gamma - chr2R 22363058 intron Liprin-gamma - chr2R 22363140 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-380 763 chr2R 22430128 22430140 chr2R 22430247 22430258 4 118 7.5 11.0 9.2 0.4 130 chr2R 22430128 intergenic not near genes chr2R 22430193 intergenic not near genes chr2R 22430258 intergenic not near genes chr2R_4_22430001 chr2R_22430001 RAL-380 764 chr2R 22460381 22460397 chr2R 22460460 22460476 4 79 6.5 10.5 8.5 0.4 95 chr2R 22460381 intron CG10384 + chr2R 22460428 intron CG10384 + chr2R 22460476 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-380 765 chr2R 22465319 22465335 chr2R 22465518 22465533 BS 7 199 8.0 0.5 4.2 1.3 214 chr2R 22465319 intron CG10384 + chr2R 22465426 intron CG10384 + chr2R 22465533 intron CG10384 + chr2R_7_22465001 chr2R_22465001 RAL-380 766 chr2R 22476924 22476939 chr2R 22483070 22483105 8 6152 32.5 21.5 27.0 0.3 6181 chr2R 22476924 exon CG45063 - chr2R 22480014 exon CG4752 + chr2R 22483105 intergenic CG4752 +,CG4554 + chr2R_8_22480001 chr2R_22480001 RAL-380 767 chr2R 22499853 22499885 chr2R 22499928 22499961 7 73 7.5 11.0 9.2 0.7 108 chr2R 22499853 intron px - chr2R 22499907 intron px - chr2R 22499961 intron px - chr2R_7_22495001 chr2R_22495001 RAL-380 768 chr2R 22525759 22525781 chr2R 22529306 22529308 jockey 4 3544 3.5 4.0 3.8 0.8 3549 chr2R 22525759 intron px - chr2R 22527534 intron px - chr2R 22529308 intron px - chr2R_4_22525001 chr2R_22525001 RAL-380 769 chr2R 22534333 22534360 chr2R 22534462 22534489 8 129 9.0 5.5 7.2 1.0 156 chr2R 22534333 intron px - chr2R 22534411 intron px - chr2R 22534489 intron px - chr2R_8_22530001 chr2R_22530001 RAL-380 770 chr2R 22623451 22623484 chr2R 22623591 22623623 7 137 6.5 3.5 5.0 1.2 172 chr2R 22623451 intron CG33143 + chr2R 22623537 intron CG33143 + chr2R 22623623 intron CG33143 + chr2R_7_22620001 chr2R_22620001 RAL-380 771 chr2R 22654396 22654400 chr2R 22654459 22654480 4 76 10.0 14.0 12.0 0.3 84 chr2R 22654396 exon Cyp6d2 - chr2R 22654438 5` UTR Cyp6d2 - chr2R 22654480 5` UTR Cyp6d2 - chr2R_4_22650001 chr2R_22650001 RAL-380 772 chr2R 22774964 22775002 chr2R 22775382 22775420 jockey 12 415 3.0 2.5 2.8 3.2 456 chr2R 22774964 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-380 773 chr2R 22781952 22781991 chr2R 22782139 22782162 6 184 3.0 3.0 3.0 1.5 210 chr2R 22781952 intron CG42260 - chr2R 22782057 intron CG42260 - chr2R 22782162 intron CG42260 - chr2R_6_22780001 chr2R_22780001 RAL-380 774 chr2R 22785728 22785760 chr2R 22785806 22785838 4 77 2.0 0.5 1.2 1.8 110 chr2R 22785728 intron CG42260 - chr2R 22785783 intron CG42260 - chr2R 22785838 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-380 775 chr2R 22835368 22835395 chr2R 22835444 22835471 11 71 4.5 5.5 5.0 1.8 103 chr2R 22835368 exon CG12490 + chr2R 22835420 exon CG12490 + chr2R 22835471 exon CG12490 + chr2R_11_22835001 chr2R_22835001 RAL-380 776 chr2R 22907404 22907436 chr2R 22907497 22907501 11 89 8.0 9.5 8.8 1.1 97 chr2R 22907404 intron nahoda + chr2R 22907452 intron nahoda + chr2R 22907501 intron nahoda + chr2R_11_22905001 chr2R_22905001 RAL-380 777 chr2R 22945051 22945084 chr2R 22945165 22945196 14 111 5.0 0.5 2.8 3.7 145 chr2R 22945051 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945196 intergenic CG42694 + chr2R_14_22945001 chr2R_22945001 RAL-380 778 chr2R 22995048 22995069 chr2R 22995144 22995154 7 94 4.0 0.5 2.2 2.2 106 chr2R 22995048 intron,intron twi +,CG9896 - chr2R 22995101 intron,intron twi +,CG9896 - chr2R 22995154 intron,intron twi +,CG9896 - chr2R_7_22995001 chr2R_22995001 RAL-380 779 chr2R 23029617 23029637 chr2R 23029694 23029708 11 76 3.0 3.0 3.0 2.8 91 chr2R 23029617 intron,intron twi +,CG42741 - chr2R 23029662 intron,intron twi +,CG42741 - chr2R 23029708 intron,intron twi +,CG42741 - chr2R_11_23025001 chr2R_23025001 RAL-380 780 chr2R 23052650 23052675 chr2R 23052726 23052751 13 75 6.0 5.0 5.5 2.0 101 chr2R 23052650 intergenic not near genes chr2R 23052700 intergenic not near genes chr2R 23052751 intergenic not near genes chr2R_13_23050001 chr2R_23050001 RAL-380 781 chr2R 23053995 23054029 chr2R 23054073 23054082 14 72 4.0 6.5 5.2 2.3 87 chr2R 23053995 intergenic not near genes chr2R 23054038 intergenic not near genes chr2R 23054082 intergenic not near genes chr2R_14_23050001 chr2R_23050001 RAL-380 782 chr2R 23061777 23061788 chr2R 23061871 23061880 4 93 6.0 6.5 6.2 0.6 103 chr2R 23061777 3` UTR l(2)06496 - chr2R 23061828 3` UTR l(2)06496 - chr2R 23061880 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-380 783 chr2R 23186103 23186112 chr2R 23186233 23186257 4 140 1.0 1.0 1.0 2.0 154 chr2R 23186103 intron CG34371 - chr2R 23186180 intron CG34371 - chr2R 23186257 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-380 784 chr2R 23290916 23290940 chr2R 23290997 23291020 6 78 5.5 5.0 5.2 1.0 104 chr2R 23290916 3` UTR CR44783 - chr2R 23290968 3` UTR CR44783 - chr2R 23291020 3` UTR CR44783 - chr2R_6_23290001 chr2R_23290001 RAL-380 785 chr2R 23422643 23422679 chr2R 23422723 23422733 16 76 3.0 3.0 3.0 4.0 90 chr2R 23422643 intron CG9815 - chr2R 23422688 intron CG9815 - chr2R 23422733 intron CG9815 - chr2R_16_23420001 chr2R_23420001 RAL-380 786 chr2R 23423742 23423773 chr2R 23423900 23423931 10 155 3.5 3.5 3.5 2.2 189 chr2R 23423742 intron CG9815 - chr2R 23423836 intron CG9815 - chr2R 23423931 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-380 787 chr2R 23529574 23529603 chr2R 23537150 23537156 412 7 7563 6.0 3.0 4.5 1.3 7582 chr2R 23529574 intron bw - chr2R 23533365 intron bw - chr2R 23537156 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-380 788 chr2R 23589178 23589194 chr2R 23589255 23589271 5 77 4.5 7.0 5.8 0.7 93 chr2R 23589178 intron apt + chr2R 23589224 intron apt + chr2R 23589271 intron apt + chr2R_5_23585001 chr2R_23585001 RAL-380 789 chr2R 23610007 23610033 chr2R 23610110 23610136 7 101 2.0 4.0 3.0 1.8 129 chr2R 23610007 intron,intron CG17664 -,CG4019 - chr2R 23610072 intron,intron CG17664 -,CG4019 - chr2R 23610136 intron,intron CG17664 -,CG4019 - chr2R_7_23610001 chr2R_23610001 RAL-380 790 chr2R 23718293 23718300 chr2R 23718435 23718442 7 142 31.5 52.5 42.0 0.2 149 chr2R 23718293 intron Sesn + chr2R 23718368 intron Sesn + chr2R 23718442 intron Sesn + chr2R_7_23715001 chr2R_23715001 RAL-380 791 chr2R 23718286 23718301 chr2R 23718447 23718460 12 156 33.0 46.0 39.5 0.3 174 chr2R 23718286 intron Sesn + chr2R 23718373 intron Sesn + chr2R 23718460 intron Sesn + chr2R_12_23715001 chr2R_23715001 RAL-380 792 chr2R 23739184 23739215 chr2R 23739262 23739293 10 72 4.5 6.0 5.2 1.6 109 chr2R 23739184 intron egl - chr2R 23739238 intron egl - chr2R 23739293 intron egl - chr2R_10_23735001 chr2R_23735001 RAL-380 793 chr2R 23747058 23747090 chr2R 23747606 23747614 7 541 2.0 17.5 9.8 0.6 556 chr2R 23747058 intergenic egl - chr2R 23747336 intergenic CG13560 + chr2R 23747614 exon CG13560 + chr2R_7_23745001 chr2R_23745001 RAL-380 794 chr2R 23914301 23914331 chr2R 23921921 23921955 412 14 7619 3.0 4.0 3.5 3.1 7654 chr2R 23914301 exon kcc + chr2R 23918128 intron kcc + chr2R 23921955 intron kcc + chr2R_14_23915001 chr2R_23915001 RAL-380 795 chr2R 24031380 24031412 chr2R 24031464 24031495 17 83 4.0 3.0 3.5 3.8 115 chr2R 24031380 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_17_24030001 chr2R_24030001 RAL-380 796 chr2R 24147067 24147090 chr2R 24154644 24154663 412 4 7576 1.5 5.5 3.5 0.9 7596 chr2R 24147067 intron Dat + chr2R 24150865 intron Dat + chr2R 24154663 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-380 797 chr2R 24177236 24177268 chr2R 24184721 24184753 412 11 7484 5.5 3.5 4.5 2.0 7517 chr2R 24177236 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_11_24180001 chr2R_24180001 RAL-380 798 chr2R 24351415 24351429 chr2R 24351496 24351510 5 79 2.5 4.0 3.2 1.2 95 chr2R 24351415 intron bs + chr2R 24351462 intron bs + chr2R 24351510 intron,3` UTR bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-380 799 chr2R 24353427 24353458 chr2R 24361789 24361819 roo 9 8362 2.5 1.5 2.0 3.0 8392 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357623 intron,intron bs +,CR44811 - chr2R 24361819 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-380 800 chr2R 24383828 24383858 chr2R 24383909 24383938 11 80 4.5 4.5 4.5 2.0 110 chr2R 24383828 intron mAChR-A - chr2R 24383883 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_11_24380001 chr2R_24380001 RAL-380 801 chr2R 24430935 24430946 chr2R 24431015 24431033 6 83 0.0 3.5 1.8 2.1 98 chr2R 24430935 intergenic CG15873 -,Pgam5-2 - chr2R 24430984 intergenic CG15873 -,Pgam5-2 - chr2R 24431033 intergenic Pgam5-2 -,CG15873 - chr2R_6_24430001 chr2R_24430001 RAL-380 802 chr2R 24433605 24433639 chr2R 24433706 24433741 12 102 3.5 2.5 3.0 3.0 136 chr2R 24433605 intergenic not near genes chr2R 24433673 intergenic not near genes chr2R 24433741 intergenic not near genes chr2R_12_24430001 chr2R_24430001 RAL-380 803 chr2R 24483639 24483669 chr2R 24483719 24483735 14 76 2.5 1.0 1.8 5.0 96 chr2R 24483639 intron CG13579 + chr2R 24483687 intron CG13579 + chr2R 24483735 intron CG13579 + chr2R_14_24480001 chr2R_24480001 RAL-380 804 chr2R 24519348 24519372 chr2R 24519600 24519624 11 251 3.0 5.0 4.0 2.2 276 chr2R 24519348 intergenic Ir60d + chr2R 24519486 exon Ir60d + chr2R 24519624 exon Ir60d + chr2R_11_24515001 chr2R_24515001 RAL-380 805 chr2R 24542204 24542225 chr2R 24543001 24543024 11 796 5.0 2.5 3.8 2.3 820 chr2R 24542204 intron,intron CG4622 -,ITP + chr2R 24542614 intron,intron CG4622 -,ITP + chr2R 24543024 intron,intron CG4622 -,ITP + chr2R_11_24540001 chr2R_24540001 RAL-380 806 chr2R 24548921 24548930 chr2R 24549005 24549014 7 84 7.0 1.5 4.2 1.3 93 chr2R 24548921 intron,intron CG4622 -,ITP + chr2R 24548968 intron,intron CG4622 -,ITP + chr2R 24549014 intron,intron CG4622 -,ITP + chr2R_7_24545001 chr2R_24545001 RAL-380 807 chr2R 24548932 24548954 chr2R 24549004 24549038 15 80 3.0 1.5 2.2 4.7 106 chr2R 24548932 intron,intron CG4622 -,ITP + chr2R 24548985 intron,intron CG4622 -,ITP + chr2R 24549038 intron,intron CG4622 -,ITP + chr2R_15_24545001 chr2R_24545001 RAL-380 808 chr2R 24590097 24590145 chr2R 24590205 24590230 8 102 0.5 6.0 3.2 1.9 133 chr2R 24590097 intron pio + chr2R 24590164 intron pio + chr2R 24590230 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-380 809 chr2R 24647602 24647613 chr2R 24655158 24655170 412 5 7556 2.0 3.0 2.5 1.4 7568 chr2R 24647602 intergenic not near genes chr2R 24651386 intergenic not near genes chr2R 24655170 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-380 810 chr2R 24727883 24727916 chr2R 24735390 24735421 mdg1 15 7506 2.5 4.0 3.2 3.6 7538 chr2R 24727883 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735421 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-380 811 chr2R 24763613 24763643 chr2R 24765586 24765595 G2 14 1973 3.5 6.0 4.8 2.4 1982 chr2R 24763613 exon CG3894 + chr2R 24764604 intron CG3894 + chr2R 24765595 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-380 812 chr2R 24848653 24848679 chr2R 24848737 24848762 8 84 2.0 4.0 3.0 2.0 109 chr2R 24848653 intergenic CG3650 + chr2R 24848708 intergenic CG3650 + chr2R 24848762 intergenic CG3650 + chr2R_8_24845001 chr2R_24845001 RAL-380 813 chr2R 25061333 25061367 chr2R 25061416 25061449 12 81 2.5 6.0 4.2 2.3 116 chr2R 25061333 intergenic not near genes chr2R 25061391 intergenic not near genes chr2R 25061449 intergenic not near genes chr2R_12_25060001 chr2R_25060001 RAL-380 814 chr2R 25081736 25081767 chr2R 25081883 25081915 11 146 3.5 3.0 3.2 2.6 179 chr2R 25081736 intron gol - chr2R 25081826 intron gol - chr2R 25081915 intron gol - chr2R_11_25080001 chr2R_25080001 RAL-380 815 chr2R 25101275 25101302 chr2R 25101377 25101404 10 100 5.5 3.0 4.2 1.9 129 chr2R 25101275 intron lov - chr2R 25101340 intron lov - chr2R 25101404 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-380 816 chr2R 25102527 25102550 chr2R 25102689 25102700 8 166 2.5 3.0 2.8 2.1 173 chr2R 25102527 intron lov - chr2R 25102614 intron lov - chr2R 25102700 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-380 817 chr2R 25104793 25104804 chr2R 25104918 25104929 8 125 4.5 4.5 4.5 1.5 136 chr2R 25104793 intron lov - chr2R 25104861 intron lov - chr2R 25104929 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-380 818 chr2R 25131033 25131043 chr2R 25131096 25131110 4 68 1.5 2.5 2.0 1.3 77 chr2R 25131033 intron lov - chr2R 25131072 intron lov - chr2R 25131110 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-380 819 chr2R 25141660 25141683 chr2R 25159350 25159367 roo 6 17689 1.0 4.0 2.5 1.7 17707 chr2R 25141660 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159367 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-380 820 chr2R 25244000 25244010 chr2R 25244074 25244086 4 76 0.0 2.0 1.0 2.0 86 chr2R 25244000 intron CG9380 - chr2R 25244043 intron CG9380 - chr2R 25244086 intron CG9380 - chr2R_4_25240001 chr2R_25240001 RAL-380 821 chr2R 25253447 25253473 chr2R 25253523 25253549 8 74 3.5 5.0 4.2 1.5 102 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253549 intron,intron CG9380 -,CG30428 + chr2R_8_25250001 chr2R_25250001 RAL-380 822 chr2R 25255576 25255578 chr2R 25257220 25257221 4 1644 1.5 9.5 5.5 0.6 1645 chr2R 25255576 intergenic CG9380 - chr2R 25256398 intergenic not near genes chr2R 25257221 intergenic not near genes chr2R_4_25255001 chr2R_25255001 RAL-380 823 chr3L 51390 51417 chr3L 51487 51515 11 97 5.5 4.5 5.0 1.8 125 chr3L 51390 intergenic not near genes chr3L 51452 intergenic not near genes chr3L 51515 intergenic not near genes chr3L_11_50001 chr3L_50001 RAL-380 824 chr3L 110211 110245 chr3L 119376 119409 roo 10 9166 2.0 1.5 1.8 3.6 9198 chr3L 110211 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-380 825 chr3L 155784 155796 chr3L 155860 155873 4 76 6.0 1.0 3.5 0.9 89 chr3L 155784 intron p130CAS + chr3L 155828 intron p130CAS + chr3L 155873 intron p130CAS + chr3L_4_155001 chr3L_155001 RAL-380 826 chr3L 217038 217056 chr3L 217476 217506 8 448 8.0 3.5 5.8 1.2 468 chr3L 217038 5` UTR Kaz1-ORFB + chr3L 217272 5` UTR Kaz1-ORFB + chr3L 217506 exon Kaz1-ORFB + chr3L_8_215001 chr3L_215001 RAL-380 827 chr3L 390967 390977 chr3L 391073 391083 5 104 5.0 7.0 6.0 0.7 116 chr3L 390967 intron trh - chr3L 391025 intron trh - chr3L 391083 intron trh - chr3L_5_390001 chr3L_390001 RAL-380 828 chr3L 402691 402718 chr3L 409743 409746 297 16 7049 10.0 9.5 9.8 1.5 7055 chr3L 402691 intergenic not near genes chr3L 406218 intergenic not near genes chr3L 409746 intergenic not near genes chr3L_16_405001 chr3L_405001 RAL-380 829 chr3L 489512 489731 chr3L 489610 489822 5 97 8.5 3.0 5.8 0.7 310 chr3L 489512 intron klar - chr3L 489667 intron klar - chr3L 489822 intron klar - chr3L_5_485001 chr3L_485001 RAL-380 830 chr3L 491637 491671 chr3L 491719 491749 8 78 1.5 3.0 2.2 2.5 112 chr3L 491637 intron klar - chr3L 491693 intron klar - chr3L 491749 intron klar - chr3L_8_490001 chr3L_490001 RAL-380 831 chr3L 642476 642501 chr3L 642567 642592 7 91 5.5 5.0 5.2 1.1 116 chr3L 642476 5` UTR CR43334 + chr3L 642534 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_7_640001 chr3L_640001 RAL-380 832 chr3L 651386 651424 chr3L 651474 651512 14 87 2.0 1.0 1.5 5.6 126 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651512 intergenic CG3402 -,Gale + chr3L_14_650001 chr3L_650001 RAL-380 833 chr3L 705899 705927 chr3L 705995 706023 10 96 2.5 2.0 2.2 3.1 124 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705961 3` UTR CG13895 - chr3L 706023 3` UTR CG13895 - chr3L_10_705001 chr3L_705001 RAL-380 834 chr3L 732832 732845 chr3L 733050 733067 4 221 2.0 4.5 3.2 1.0 235 chr3L 732832 intergenic not near genes chr3L 732950 intergenic not near genes chr3L 733067 intergenic not near genes chr3L_4_730001 chr3L_730001 RAL-380 835 chr3L 789916 789946 chr3L 790401 790419 roo 7 483 2.0 2.0 2.0 2.3 503 chr3L 789916 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790419 intergenic not near genes chr3L_7_790001 chr3L_790001 RAL-380 836 chr3L 858005 858031 chr3L 866483 866512 Tirant 5 8477 5.5 3.5 4.5 0.9 8507 chr3L 858005 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-380 837 chr3L 933912 933942 chr3L 934015 934045 11 103 1.0 3.5 2.2 3.4 133 chr3L 933912 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_11_930001 chr3L_930001 RAL-380 838 chr3L 939771 939796 chr3L 940892 940916 jockey 10 1120 4.5 4.0 4.2 1.9 1145 chr3L 939771 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940916 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-380 839 chr3L 1031576 1031614 chr3L 1031651 1031685 9 67 3.5 6.5 5.0 1.5 109 chr3L 1031576 intron trio - chr3L 1031630 intron trio - chr3L 1031685 intron trio - chr3L_9_1030001 chr3L_1030001 RAL-380 840 chr3L 1042966 1042989 chr3L 1043044 1043066 6 77 1.0 2.5 1.8 2.1 100 chr3L 1042966 intron bab1 - chr3L 1043016 intron bab1 - chr3L 1043066 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-380 841 chr3L 1104004 1104013 chr3L 1104195 1104204 4 190 3.0 5.0 4.0 0.8 200 chr3L 1104004 intergenic not near genes chr3L 1104104 intergenic not near genes chr3L 1104204 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-380 842 chr3L 1109637 1109667 chr3L 1109720 1109737 8 84 3.0 3.5 3.2 1.9 100 chr3L 1109637 intergenic not near genes chr3L 1109687 intergenic not near genes chr3L 1109737 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-380 843 chr3L 1202370 1202387 chr3L 1202672 1202695 6 305 5.5 7.5 6.5 0.8 325 chr3L 1202370 intron,exon mwh +,CG32335 - chr3L 1202532 intron,exon mwh +,CG32335 - chr3L 1202695 intron,exon mwh +,CG32335 - chr3L_6_1200001 chr3L_1200001 RAL-380 844 chr3L 1210389 1210420 chr3L 1210729 1210743 7 337 6.0 0.5 3.2 1.7 354 chr3L 1210389 intron mwh + chr3L 1210566 intron,exon mwh +,LysC + chr3L 1210743 intron,exon,3` UTR mwh +,LysC +,LysD - chr3L_7_1210001 chr3L_1210001 RAL-380 845 chr3L 1219595 1219623 chr3L 1227327 1227344 412 9 7731 3.0 3.0 3.0 2.2 7749 chr3L 1219595 intron mwh + chr3L 1223470 intron mwh + chr3L 1227344 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-380 846 chr3L 1257640 1257655 chr3L 1257720 1257735 5 80 0.0 4.5 2.2 1.6 95 chr3L 1257640 intron CG9134 + chr3L 1257688 intron CG9134 + chr3L 1257735 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-380 847 chr3L 1361291 1361324 chr3L 1361366 1361366 9 63 3.5 3.5 3.5 2.0 75 chr3L 1361291 intron Ptp61F - chr3L 1361328 intron Ptp61F - chr3L 1361366 intron Ptp61F - chr3L_9_1360001 chr3L_1360001 RAL-380 848 chr3L 1364053 1364065 chr3L 1364136 1364151 6 85 1.0 5.5 3.2 1.4 98 chr3L 1364053 intron Ptp61F - chr3L 1364102 intron Ptp61F - chr3L 1364151 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-380 849 chr3L 1371721 1371755 chr3L 1371807 1371841 23 84 4.5 4.5 4.5 4.2 120 chr3L 1371721 intron,intron Ptp61F -,ru + chr3L 1371781 intron,intron Ptp61F -,ru + chr3L 1371841 intron,intron Ptp61F -,ru + chr3L_23_1370001 chr3L_1370001 RAL-380 850 chr3L 1378942 1378960 chr3L 1379018 1379036 6 73 3.5 0.0 1.8 2.1 94 chr3L 1378942 intron,intron Ptp61F -,ru + chr3L 1378989 intron,intron Ptp61F -,ru + chr3L 1379036 intron,intron Ptp61F -,ru + chr3L_6_1375001 chr3L_1375001 RAL-380 851 chr3L 1380110 1380130 chr3L 1380210 1380230 4 100 0.5 1.5 1.0 2.0 120 chr3L 1380110 intron,intron Ptp61F -,ru + chr3L 1380170 intron,intron Ptp61F -,ru + chr3L 1380230 intron,intron Ptp61F -,ru + chr3L_4_1380001 chr3L_1380001 RAL-380 852 chr3L 1477389 1477416 chr3L 1477479 1477506 9 89 2.5 0.5 1.5 3.6 117 chr3L 1477389 intron stet - chr3L 1477448 intron stet - chr3L 1477506 intron stet - chr3L_9_1475001 chr3L_1475001 RAL-380 853 chr3L 1505998 1506033 chr3L 1513593 1513629 17.6 16 7596 7.5 5.0 6.2 2.2 7631 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-380 854 chr3L 1569521 1569533 chr3L 1569597 1569608 4 76 3.5 6.0 4.8 0.7 87 chr3L 1569521 5` UTR CG12004 + chr3L 1569564 intron CG12004 + chr3L 1569608 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-380 855 chr3L 1585343 1585362 chr3L 1585433 1585452 8 89 1.5 3.5 2.5 2.3 109 chr3L 1585343 intron CG13917 + chr3L 1585398 intron CG13917 + chr3L 1585452 intron CG13917 + chr3L_8_1585001 chr3L_1585001 RAL-380 856 chr3L 1805701 1805709 chr3L 1805875 1805883 4 174 4.0 2.0 3.0 1.0 182 chr3L 1805701 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805883 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-380 857 chr3L 1849086 1849108 chr3L 1849171 1849195 10 87 5.0 2.5 3.8 2.1 109 chr3L 1849086 intergenic not near genes chr3L 1849140 intergenic not near genes chr3L 1849195 intergenic not near genes chr3L_10_1845001 chr3L_1845001 RAL-380 858 chr3L 1885161 1885182 chr3L 1885241 1885262 7 80 0.0 3.5 1.8 2.5 101 chr3L 1885161 intergenic Aprt -,Tmhs + chr3L 1885212 intergenic Aprt -,Tmhs + chr3L 1885262 intergenic Aprt -,Tmhs + chr3L_7_1885001 chr3L_1885001 RAL-380 859 chr3L 1991118 1991147 chr3L 1991196 1991223 5 77 3.0 2.5 2.8 1.3 105 chr3L 1991118 intergenic not near genes chr3L 1991170 intergenic not near genes chr3L 1991223 intergenic not near genes chr3L_5_1990001 chr3L_1990001 RAL-380 860 chr3L 2139210 2139234 chr3L 2139291 2139314 7 81 2.5 4.0 3.2 1.7 104 chr3L 2139210 intron zormin - chr3L 2139262 intron zormin - chr3L 2139314 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-380 861 chr3L 2168770 2168808 chr3L 2168861 2168899 19 91 6.0 3.5 4.8 3.3 129 chr3L 2168770 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_19_2165001 chr3L_2165001 RAL-380 862 chr3L 2308011 2308035 chr3L 2308115 2308141 9 105 0.5 5.5 3.0 2.2 130 chr3L 2308011 intergenic not near genes chr3L 2308076 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-380 863 chr3L 2331581 2331611 chr3L 2331658 2331688 10 77 2.0 2.5 2.2 3.1 107 chr3L 2331581 intron MsR1 + chr3L 2331634 intron MsR1 + chr3L 2331688 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-380 864 chr3L 2447506 2447532 chr3L 2456662 2456687 roo 11 9154 2.5 7.5 5.0 1.8 9181 chr3L 2447506 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_11_2450001 chr3L_2450001 RAL-380 865 chr3L 2533649 2533677 chr3L 2533730 2533758 9 78 5.0 4.0 4.5 1.6 109 chr3L 2533649 intron Spn - chr3L 2533704 intron Spn - chr3L 2533758 intron Spn - chr3L_9_2530001 chr3L_2530001 RAL-380 866 chr3L 2534611 2534641 chr3L 2534694 2534724 10 81 0.0 4.5 2.2 3.1 113 chr3L 2534611 intron Spn - chr3L 2534668 intron Spn - chr3L 2534724 exon Spn - chr3L_10_2530001 chr3L_2530001 RAL-380 867 chr3L 2595597 2595610 chr3L 2595683 2595696 4 86 2.5 3.0 2.8 1.1 99 chr3L 2595597 intergenic dos +,CG16984 +,CG12182 - chr3L 2595646 intergenic dos +,CG16984 +,CG12182 - chr3L 2595696 intergenic CG16984 +,dos +,CG12182 - chr3L_4_2595001 chr3L_2595001 RAL-380 868 chr3L 2657101 2657129 chr3L 2657179 2657210 5 80 6.0 2.5 4.2 1.0 109 chr3L 2657101 3` UTR Fife - chr3L 2657156 3` UTR Fife - chr3L 2657210 3` UTR Fife - chr3L_5_2655001 chr3L_2655001 RAL-380 869 chr3L 2667910 2667924 chr3L 2667982 2668000 6 72 3.0 3.0 3.0 1.5 90 chr3L 2667910 intron Fife - chr3L 2667955 intron Fife - chr3L 2668000 intron Fife - chr3L_6_2665001 chr3L_2665001 RAL-380 870 chr3L 2680517 2680547 chr3L 2680597 2680627 11 77 2.0 0.0 1.0 5.5 110 chr3L 2680517 intron Fife - chr3L 2680572 intron Fife - chr3L 2680627 intron Fife - chr3L_11_2680001 chr3L_2680001 RAL-380 871 chr3L 2719538 2719560 chr3L 2719640 2719662 5 102 1.0 3.5 2.2 1.6 124 chr3L 2719538 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719662 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-380 872 chr3L 2766746 2766766 chr3L 2766841 2766862 5 95 2.0 1.5 1.8 1.8 116 chr3L 2766746 intergenic Non2 +,Mrtf - chr3L 2766804 intergenic Non2 +,Mrtf - chr3L 2766862 intergenic Non2 +,Mrtf - chr3L_5_2765001 chr3L_2765001 RAL-380 873 chr3L 2927856 2927860 chr3L 2936129 2936137 Tirant 4 8275 2.5 3.0 2.8 1.1 8281 chr3L 2927856 intron Shab + chr3L 2931996 intron Shab + chr3L 2936137 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-380 874 chr3L 3050896 3050929 chr3L 3050983 3050999 14 83 3.5 4.0 3.8 2.9 103 chr3L 3050896 intron CG32485 + chr3L 3050948 intron CG32485 + chr3L 3050999 intron CG32485 + chr3L_14_3050001 chr3L_3050001 RAL-380 875 chr3L 3061294 3061309 chr3L 3069867 3069892 Tirant 5 8581 3.0 5.5 4.2 1.0 8598 chr3L 3061294 intron CG32486 - chr3L 3065593 intron CG32486 - chr3L 3069892 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-380 876 chr3L 3165351 3165382 chr3L 3165433 3165465 13 82 2.5 4.5 3.5 2.9 114 chr3L 3165351 intron,intron Asciz -,CG32280 + chr3L 3165408 intron,intron Asciz -,CG32280 + chr3L 3165465 intron,intron Asciz -,CG32280 + chr3L_13_3165001 chr3L_3165001 RAL-380 877 chr3L 3269080 3269093 chr3L 3269193 3269206 5 113 1.5 3.0 2.2 1.6 126 chr3L 3269080 intergenic CG34265 + chr3L 3269143 intergenic CG34265 + chr3L 3269206 intergenic CG34265 + chr3L_5_3265001 chr3L_3265001 RAL-380 878 chr3L 3281437 3281453 chr3L 3281933 3281949 Doc 6 496 8.5 9.5 9.0 0.6 512 chr3L 3281437 intron CG12017 + chr3L 3281693 intron CG12017 + chr3L 3281949 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-380 879 chr3L 3281458 3281473 chr3L 3281932 3281965 Doc 14 492 2.5 9.5 6.0 2.0 507 chr3L 3281458 intron CG12017 + chr3L 3281712 intron CG12017 + chr3L 3281965 intron CG12017 + chr3L_14_3280001 chr3L_3280001 RAL-380 880 chr3L 3317531 3317557 chr3L 3317610 3317636 4 79 2.0 1.5 1.8 1.4 105 chr3L 3317531 intergenic Drsl5 +,PIG-C - chr3L 3317584 intergenic Drsl5 +,PIG-C - chr3L 3317636 intergenic PIG-C -,Drsl5 + chr3L_4_3315001 chr3L_3315001 RAL-380 881 chr3L 3339769 3339801 chr3L 3339852 3339884 9 82 2.5 2.0 2.2 2.8 115 chr3L 3339769 intron kst + chr3L 3339826 intron kst + chr3L 3339884 intron kst + chr3L_9_3335001 chr3L_3335001 RAL-380 882 chr3L 3475076 3475111 chr3L 3475520 3475555 jockey 6 444 1.5 3.0 2.2 1.9 479 chr3L 3475076 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-380 883 chr3L 3484372 3484406 chr3L 3484548 3484582 14 175 0.5 3.0 1.8 5.0 210 chr3L 3484372 intron,exon CG42324 +,CG43074 - chr3L 3484477 intron,exon CG42324 +,CG43074 - chr3L 3484582 intron,exon CG42324 +,CG43074 - chr3L_14_3480001 chr3L_3480001 RAL-380 884 chr3L 3601306 3601331 chr3L 3606617 3606642 copia 8 5311 2.0 5.0 3.5 1.8 5336 chr3L 3601306 intron Eip63E + chr3L 3603974 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-380 885 chr3L 3627246 3627260 chr3L 3627351 3627365 7 105 1.5 2.5 2.0 2.3 119 chr3L 3627246 intron dar1 + chr3L 3627306 intron dar1 + chr3L 3627365 intron dar1 + chr3L_7_3625001 chr3L_3625001 RAL-380 886 chr3L 3695498 3695517 chr3L 3695576 3695592 5 77 3.5 1.0 2.2 1.6 94 chr3L 3695498 intergenic not near genes chr3L 3695545 intergenic not near genes chr3L 3695592 intergenic not near genes chr3L_5_3695001 chr3L_3695001 RAL-380 887 chr3L 3758236 3758260 chr3L 3758320 3758344 6 83 2.5 3.0 2.8 1.6 108 chr3L 3758236 intron CG32264 - chr3L 3758290 intron CG32264 - chr3L 3758344 intron CG32264 - chr3L_6_3755001 chr3L_3755001 RAL-380 888 chr3L 3763757 3763764 chr3L 3763838 3763845 4 81 5.5 0.5 3.0 1.0 88 chr3L 3763757 intron CG32264 - chr3L 3763801 intron CG32264 - chr3L 3763845 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-380 889 chr3L 3783270 3783282 chr3L 3783347 3783359 4 77 3.0 3.0 3.0 1.0 89 chr3L 3783270 intron CG32264 - chr3L 3783314 intron CG32264 - chr3L 3783359 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-380 890 chr3L 3833743 3833767 chr3L 3833983 3834008 pogo 4 241 2.0 2.0 2.0 1.3 265 chr3L 3833743 intron enc + chr3L 3833876 intron enc + chr3L 3834008 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-380 891 chr3L 3848072 3848103 chr3L 3848148 3848179 7 72 3.0 1.5 2.2 2.2 107 chr3L 3848072 intron Awh + chr3L 3848126 intron Awh + chr3L 3848179 intron Awh + chr3L_7_3845001 chr3L_3845001 RAL-380 892 chr3L 3872290 3872297 chr3L 3872383 3872390 6 93 2.5 4.5 3.5 1.3 100 chr3L 3872290 intergenic not near genes chr3L 3872340 intergenic not near genes chr3L 3872390 intergenic not near genes chr3L_6_3870001 chr3L_3870001 RAL-380 893 chr3L 3873108 3873110 chr3L 5487551 5487552 4 1614443 3.5 10.5 7.0 0.5 1614444 chr3L 3873108 intergenic not near genes chr3L 4680330 intron axo - chr3L 5487552 intergenic not near genes chr3L_4_4680001 chr3L_4680001 RAL-380 894 chr3L 3889132 3889146 chr3L 3889215 3889229 5 83 1.5 0.0 0.8 2.8 97 chr3L 3889132 intergenic not near genes chr3L 3889180 intergenic not near genes chr3L 3889229 intergenic not near genes chr3L_5_3885001 chr3L_3885001 RAL-380 895 chr3L 4043961 4043985 chr3L 4044042 4044065 7 79 4.5 6.0 5.2 1.1 104 chr3L 4043961 intergenic not near genes chr3L 4044013 intergenic not near genes chr3L 4044065 intergenic not near genes chr3L_7_4040001 chr3L_4040001 RAL-380 896 chr3L 4146812 4146834 chr3L 4146894 4146914 7 81 0.0 1.5 0.8 3.9 102 chr3L 4146812 intergenic not near genes chr3L 4146863 intergenic not near genes chr3L 4146914 intergenic not near genes chr3L_7_4145001 chr3L_4145001 RAL-380 897 chr3L 4195144 4195169 chr3L 4195244 4195263 6 99 2.5 6.0 4.2 1.2 119 chr3L 4195144 exon CG43367 + chr3L 4195204 intron CG43367 + chr3L 4195263 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-380 898 chr3L 4328751 4328765 chr3L 4336235 4336256 412 5 7492 1.5 2.0 1.8 1.8 7505 chr3L 4328751 intron Cip4 - chr3L 4332504 intron Cip4 - chr3L 4336256 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-380 899 chr3L 4446220 4446245 chr3L 4446306 4446329 5 85 4.0 7.5 5.8 0.7 109 chr3L 4446220 3` UTR CR45739 - chr3L 4446274 3` UTR CR45739 - chr3L 4446329 3` UTR CR45739 - chr3L_5_4445001 chr3L_4445001 RAL-380 900 chr3L 4629610 4629630 chr3L 4629780 4629795 5 169 0.0 3.0 1.5 2.0 185 chr3L 4629610 3` UTR axo - chr3L 4629702 3` UTR axo - chr3L 4629795 3` UTR axo - chr3L_5_4625001 chr3L_4625001 RAL-380 901 chr3L 4676038 4676051 chr3L 4676119 4676132 4 81 1.5 0.0 0.8 2.2 94 chr3L 4676038 intron axo - chr3L 4676085 intron axo - chr3L 4676132 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-380 902 chr3L 4858301 4858336 chr3L 4858391 4858426 10 88 4.5 5.0 4.8 1.7 125 chr3L 4858301 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-380 903 chr3L 4901136 4901151 chr3L 4907326 4907341 diver 8 6190 5.0 3.5 4.2 1.5 6205 chr3L 4901136 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907341 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-380 904 chr3L 5034170 5034192 chr3L 5043322 5043344 roo 6 9152 2.5 3.0 2.8 1.6 9174 chr3L 5034170 intron Con - chr3L 5038757 intron Con - chr3L 5043344 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-380 905 chr3L 5045456 5045482 chr3L 5050237 5050263 Doc 7 4781 1.5 2.5 2.0 2.3 4807 chr3L 5045456 intron Con - chr3L 5047860 intron Con - chr3L 5050263 intron Con - chr3L_7_5045001 chr3L_5045001 RAL-380 906 chr3L 5056473 5056491 chr3L 5056553 5056567 5 79 2.0 0.5 1.2 2.3 94 chr3L 5056473 intron Con - chr3L 5056520 intron Con - chr3L 5056567 intron Con - chr3L_5_5055001 chr3L_5055001 RAL-380 907 chr3L 5104486 5104511 chr3L 5124620 5124644 6 20134 1.5 0.0 0.8 3.3 20158 chr3L 5104486 intergenic not near genes chr3L 5114565 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-380 908 chr3L 5327464 5327478 chr3L 5327549 5327563 4 85 3.0 3.0 3.0 1.0 99 chr3L 5327464 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327563 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-380 909 chr3L 5339827 5339850 chr3L 5340071 5340094 11 243 3.5 2.5 3.0 2.8 267 chr3L 5339827 intergenic not near genes chr3L 5339960 intergenic not near genes chr3L 5340094 intergenic not near genes chr3L_11_5335001 chr3L_5335001 RAL-380 910 chr3L 5351110 5351133 chr3L 5351195 5351218 10 84 1.0 1.5 1.2 4.5 108 chr3L 5351110 intron lama - chr3L 5351164 intron lama - chr3L 5351218 intron lama - chr3L_10_5350001 chr3L_5350001 RAL-380 911 chr3L 5388200 5388233 chr3L 5388524 5388557 10 319 6.0 3.0 4.5 1.8 357 chr3L 5388200 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388557 intergenic not near genes chr3L_10_5385001 chr3L_5385001 RAL-380 912 chr3L 5537720 5537756 chr3L 5538062 5538074 jockey 9 336 3.5 3.0 3.2 2.1 354 chr3L 5537720 intergenic not near genes chr3L 5537897 intergenic not near genes chr3L 5538074 intergenic CG10625 - chr3L_9_5535001 chr3L_5535001 RAL-380 913 chr3L 5563566 5563595 chr3L 5563644 5563653 10 79 3.5 6.5 5.0 1.7 87 chr3L 5563566 5` UTR Sucb - chr3L 5563610 5` UTR Sucb - chr3L 5563653 5` UTR Sucb - chr3L_10_5560001 chr3L_5560001 RAL-380 914 chr3L 5707562 5707592 chr3L 5707769 5707798 11 206 4.0 5.5 4.8 1.9 236 chr3L 5707562 intron sif + chr3L 5707680 intron sif + chr3L 5707798 intron sif + chr3L_11_5705001 chr3L_5705001 RAL-380 915 chr3L 5886413 5886440 chr3L 5886487 5886497 8 72 4.0 4.5 4.2 1.5 84 chr3L 5886413 intergenic not near genes chr3L 5886455 intergenic not near genes chr3L 5886497 intergenic not near genes chr3L_8_5885001 chr3L_5885001 RAL-380 916 chr3L 5908083 5908107 chr3L 5908163 5908187 6 80 2.0 2.0 2.0 2.0 104 chr3L 5908083 intron CG13288 + chr3L 5908135 intron CG13288 + chr3L 5908187 intron CG13288 + chr3L_6_5905001 chr3L_5905001 RAL-380 917 chr3L 5910041 5910059 chr3L 5910282 5910300 pogo 4 241 2.5 7.0 4.8 0.7 259 chr3L 5910041 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910300 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-380 918 chr3L 5926312 5926347 chr3L 5926502 5926537 BS 10 187 2.5 3.5 3.0 2.5 225 chr3L 5926312 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926537 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-380 919 chr3L 6001683 6001715 chr3L 6004383 6004415 jockey 6 2700 3.5 0.5 2.0 2.0 2732 chr3L 6001683 intron PVRAP + chr3L 6003049 intron PVRAP + chr3L 6004415 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-380 920 chr3L 6022249 6022272 chr3L 6022324 6022344 10 78 4.5 2.5 3.5 2.2 95 chr3L 6022249 intron PVRAP + chr3L 6022296 intron PVRAP + chr3L 6022344 intron PVRAP + chr3L_10_6020001 chr3L_6020001 RAL-380 921 chr3L 6049380 6049403 chr3L 6049485 6049485 6 100 3.5 1.5 2.5 1.7 105 chr3L 6049380 intergenic not near genes chr3L 6049432 intergenic not near genes chr3L 6049485 intergenic not near genes chr3L_6_6045001 chr3L_6045001 RAL-380 922 chr3L 6052660 6052671 chr3L 6052733 6052748 9 80 10.5 8.0 9.2 0.9 88 chr3L 6052660 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052748 exon Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-380 923 chr3L 6220926 6220948 chr3L 6230076 6230099 roo 7 9151 3.5 4.5 4.0 1.4 9173 chr3L 6220926 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-380 924 chr3L 6284950 6284975 chr3L 6285044 6285069 8 91 1.0 1.5 1.2 3.6 119 chr3L 6284950 intergenic not near genes chr3L 6285010 intergenic not near genes chr3L 6285069 intergenic not near genes chr3L_8_6285001 chr3L_6285001 RAL-380 925 chr3L 6405669 6405691 chr3L 6432133 6432154 roo 4 26463 3.5 1.0 2.2 1.2 26485 chr3L 6405669 intron CG42747 + chr3L 6418912 intron CG42747 + chr3L 6432154 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-380 926 chr3L 6438733 6438760 chr3L 6438824 6438839 7 88 4.0 4.5 4.2 1.3 106 chr3L 6438733 intron CG42747 + chr3L 6438786 intron CG42747 + chr3L 6438839 intron CG42747 + chr3L_7_6435001 chr3L_6435001 RAL-380 927 chr3L 6442150 6442183 chr3L 6442364 6442398 11 214 25.5 26.5 26.0 0.4 248 chr3L 6442150 intron CG42747 + chr3L 6442274 intron CG42747 + chr3L 6442398 intron CG42747 + chr3L_11_6440001 chr3L_6440001 RAL-380 928 chr3L 6532862 6532880 chr3L 6533008 6533027 5 147 2.5 5.0 3.8 1.0 165 chr3L 6532862 intron sfl + chr3L 6532944 intron sfl + chr3L 6533027 intron sfl + chr3L_5_6530001 chr3L_6530001 RAL-380 929 chr3L 6620529 6620543 chr3L 6621053 6621056 Rt1c 4 521 5.0 8.5 6.8 0.5 527 chr3L 6620529 intergenic not near genes chr3L 6620792 intergenic not near genes chr3L 6621056 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-380 930 chr3L 6642872 6642886 chr3L 6642952 6642965 4 79 0.0 0.0 0.0 4.0 93 chr3L 6642872 intergenic CR45239 + chr3L 6642918 intergenic CR45239 + chr3L 6642965 intergenic CR45239 + chr3L_4_6640001 chr3L_6640001 RAL-380 931 chr3L 6855931 6855939 chr3L 6860715 6860721 Doc 4 4783 1.5 2.0 1.8 1.4 4790 chr3L 6855931 intergenic not near genes chr3L 6858326 intergenic not near genes chr3L 6860721 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-380 932 chr3L 6908013 6908036 chr3L 6908098 6908100 5 80 3.5 0.5 2.0 1.7 87 chr3L 6908013 intergenic not near genes chr3L 6908056 intergenic not near genes chr3L 6908100 intergenic not near genes chr3L_5_6905001 chr3L_6905001 RAL-380 933 chr3L 6974510 6974519 chr3L 6974601 6974620 5 99 0.0 8.0 4.0 1.0 110 chr3L 6974510 intron Galphai - chr3L 6974565 intron Galphai - chr3L 6974620 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-380 934 chr3L 7033176 7033204 chr3L 7033255 7033284 12 78 1.5 5.5 3.5 2.7 108 chr3L 7033176 intron Mp + chr3L 7033230 intron Mp + chr3L 7033284 intron Mp + chr3L_12_7030001 chr3L_7030001 RAL-380 935 chr3L 7129421 7129446 chr3L 7129664 7129689 6 243 4.0 1.0 2.5 1.7 268 chr3L 7129421 3` UTR CG15829 + chr3L 7129555 3` UTR CG15829 + chr3L 7129689 intergenic CG15829 + chr3L_6_7125001 chr3L_7125001 RAL-380 936 chr3L 7130653 7130675 chr3L 7130831 7130852 7 176 2.0 6.5 4.2 1.3 199 chr3L 7130653 intergenic CG8628 + chr3L 7130752 intergenic CG8628 + chr3L 7130852 intergenic CG8628 + chr3L_7_7130001 chr3L_7130001 RAL-380 937 chr3L 7218094 7218119 chr3L 7218172 7218195 5 77 3.5 7.5 5.5 0.8 101 chr3L 7218094 intergenic not near genes chr3L 7218144 intergenic not near genes chr3L 7218195 intergenic not near genes chr3L_5_7215001 chr3L_7215001 RAL-380 938 chr3L 7301099 7301111 chr3L 7301473 7301483 5 376 4.5 1.5 3.0 1.2 384 chr3L 7301099 intron unc-13-4A - chr3L 7301291 intron unc-13-4A - chr3L 7301483 intron unc-13-4A - chr3L_5_7300001 chr3L_7300001 RAL-380 939 chr3L 7358298 7358321 chr3L 7359580 7359605 4 1280 19.5 31.5 25.5 0.2 1307 chr3L 7358298 exon pst - chr3L 7358952 exon pst - chr3L 7359605 intron pst - chr3L_4_7355001 chr3L_7355001 RAL-380 940 chr3L 7377320 7377349 chr3L 7380419 7380454 297 9 3102 2.0 2.0 2.0 3.0 3134 chr3L 7377320 intron SMSr - chr3L 7378887 intron SMSr - chr3L 7380454 intron SMSr - chr3L_9_7375001 chr3L_7375001 RAL-380 941 chr3L 7450689 7450719 chr3L 7450772 7450802 6 83 3.0 2.0 2.5 1.7 113 chr3L 7450689 intron CG42458 + chr3L 7450746 intron CG42458 + chr3L 7450802 intron CG42458 + chr3L_6_7450001 chr3L_7450001 RAL-380 942 chr3L 7475223 7475242 chr3L 7475296 7475302 7 74 6.5 4.5 5.5 1.1 79 chr3L 7475223 intergenic CG43292 + chr3L 7475262 intergenic CG43292 + chr3L 7475302 intergenic CG43292 + chr3L_7_7475001 chr3L_7475001 RAL-380 943 chr3L 7475248 7475252 chr3L 7475292 7475305 6 63 3.0 4.0 3.5 1.3 57 chr3L 7475248 intergenic CG43292 + chr3L 7475276 intergenic CG43292 + chr3L 7475305 intergenic CG43292 + chr3L_6_7475001 chr3L_7475001 RAL-380 944 chr3L 7491568 7491600 chr3L 7491651 7491683 9 83 1.0 2.5 1.8 3.2 115 chr3L 7491568 intergenic Cyp316a1 + chr3L 7491626 intergenic Cyp316a1 + chr3L 7491683 intergenic Cyp316a1 + chr3L_9_7490001 chr3L_7490001 RAL-380 945 chr3L 7498756 7498782 chr3L 7503533 7503559 F-element 6 4777 4.5 1.5 3.0 1.5 4803 chr3L 7498756 5` UTR CG8539 - chr3L 7501158 intergenic not near genes chr3L 7503559 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-380 946 chr3L 7508683 7508702 chr3L 7508767 7508786 5 84 5.5 5.5 5.5 0.8 103 chr3L 7508683 intergenic not near genes chr3L 7508734 intergenic not near genes chr3L 7508786 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-380 947 chr3L 7760086 7760105 chr3L 7760162 7760180 4 74 2.5 1.5 2.0 1.3 94 chr3L 7760086 intergenic Hn + chr3L 7760133 intergenic Hn + chr3L 7760180 intergenic Hn + chr3L_4_7760001 chr3L_7760001 RAL-380 948 chr3L 7793711 7793745 chr3L 7800763 7800797 297 7 7052 1.0 6.0 3.5 1.6 7086 chr3L 7793711 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-380 949 chr3L 7838783 7838800 chr3L 7839417 7839434 6 632 2.0 6.0 4.0 1.2 651 chr3L 7838783 intron Pdp1 - chr3L 7839108 intron Pdp1 - chr3L 7839434 intron Pdp1 - chr3L_6_7835001 chr3L_7835001 RAL-380 950 chr3L 7845388 7845406 chr3L 7845470 7845489 6 83 2.5 0.0 1.2 2.7 101 chr3L 7845388 intron Pdp1 - chr3L 7845438 intron Pdp1 - chr3L 7845489 intron Pdp1 - chr3L_6_7845001 chr3L_7845001 RAL-380 951 chr3L 7865575 7865584 chr3L 7865715 7865722 4 139 2.5 1.0 1.8 1.4 147 chr3L 7865575 intron Pdp1 - chr3L 7865648 intron Pdp1 - chr3L 7865722 intron Pdp1 - chr3L_4_7865001 chr3L_7865001 RAL-380 952 chr3L 7886522 7886535 chr3L 7889040 7889053 Stalker4 4 2518 0.0 3.5 1.8 1.4 2531 chr3L 7886522 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889053 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-380 953 chr3L 7916840 7916854 chr3L 7926011 7926025 roo 4 9171 2.5 2.5 2.5 1.1 9185 chr3L 7916840 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926025 3` UTR syd - chr3L_4_7920001 chr3L_7920001 RAL-380 954 chr3L 7936841 7936868 chr3L 7936929 7936954 10 86 4.0 2.5 3.2 2.4 113 chr3L 7936841 3` UTR Srp9 + chr3L 7936898 3` UTR Srp9 + chr3L 7936954 3` UTR Srp9 + chr3L_10_7935001 chr3L_7935001 RAL-380 955 chr3L 7985362 7985383 chr3L 7987690 7987711 NOF 5 2327 3.5 2.5 3.0 1.2 2349 chr3L 7985362 intron nmo + chr3L 7986536 intron nmo + chr3L 7987711 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-380 956 chr3L 7992414 7992425 chr3L 7993037 7993045 5 621 2.0 2.0 2.0 1.7 631 chr3L 7992414 intron nmo + chr3L 7992730 intron nmo + chr3L 7993045 intron nmo + chr3L_5_7990001 chr3L_7990001 RAL-380 957 chr3L 8019729 8019735 chr3L 8024110 8024151 NOF 5 4396 0.0 2.5 1.2 2.3 4422 chr3L 8019729 intron nmo + chr3L 8021940 intron nmo + chr3L 8024151 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-380 958 chr3L 8062851 8062955 chr3L 8062930 8063091 4 93 2.0 1.0 1.5 1.6 240 chr3L 8062851 intergenic not near genes chr3L 8062971 intergenic not near genes chr3L 8063091 intergenic not near genes chr3L_4_8060001 chr3L_8060001 RAL-380 959 chr3L 8203540 8203567 chr3L 8203616 8203644 8 72 4.0 3.0 3.5 1.8 104 chr3L 8203540 intergenic CG13679 + chr3L 8203592 intergenic CG13679 + chr3L 8203644 intergenic CG13679 + chr3L_8_8200001 chr3L_8200001 RAL-380 960 chr3L 8295798 8295826 chr3L 8295956 8295984 12 158 1.5 6.0 3.8 2.5 186 chr3L 8295798 intergenic CG7201 - chr3L 8295891 intergenic not near genes chr3L 8295984 intergenic not near genes chr3L_12_8295001 chr3L_8295001 RAL-380 961 chr3L 8319447 8319472 chr3L 8319523 8319545 8 71 5.0 4.5 4.8 1.4 98 chr3L 8319447 intergenic CG43059 - chr3L 8319496 intergenic not near genes chr3L 8319545 intergenic not near genes chr3L_8_8315001 chr3L_8315001 RAL-380 962 chr3L 8462492 8462507 chr3L 8462594 8462597 6 99 1.0 5.0 3.0 1.5 105 chr3L 8462492 intron Gug + chr3L 8462544 intron Gug + chr3L 8462597 intron Gug + chr3L_6_8460001 chr3L_8460001 RAL-380 963 chr3L 8481798 8481801 chr3L 8490934 8490960 roo 5 9150 3.0 5.5 4.2 1.0 9162 chr3L 8481798 intron CG43163 - chr3L 8486379 intron CG43163 - chr3L 8490960 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-380 964 chr3L 8498299 8498324 chr3L 8505766 8505791 blood 6 7466 2.5 5.5 4.0 1.2 7492 chr3L 8498299 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505791 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-380 965 chr3L 8690602 8690633 chr3L 8690845 8690875 14 242 4.5 6.0 5.2 2.3 273 chr3L 8690602 intergenic not near genes chr3L 8690738 intergenic not near genes chr3L 8690875 intergenic not near genes chr3L_14_8690001 chr3L_8690001 RAL-380 966 chr3L 8791274 8791300 chr3L 8796692 8796720 I-element 7 5419 4.5 7.0 5.8 1.0 5446 chr3L 8791274 exon Fhos + chr3L 8793997 intron Fhos + chr3L 8796720 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-380 967 chr3L 8950547 8950573 chr3L 8950641 8950666 7 94 4.5 3.0 3.8 1.5 119 chr3L 8950547 intron,intron CG43783 -,orb2 - chr3L 8950606 intron,intron CG43783 -,orb2 - chr3L 8950666 intron,intron CG43783 -,orb2 - chr3L_7_8950001 chr3L_8950001 RAL-380 968 chr3L 9013691 9013693 chr3L 18417066 18417066 8 9403375 28.5 18.0 23.2 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-380 969 chr3L 9076931 9076960 chr3L 9084486 9084519 412 14 7557 1.5 2.5 2.0 4.7 7588 chr3L 9076931 exon Tequila + chr3L 9080725 intron Tequila + chr3L 9084519 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-380 970 chr3L 9130566 9130579 chr3L 9134322 9134323 412 6 3757 4.5 7.5 6.0 0.9 3757 chr3L 9130566 intergenic bol - chr3L 9132444 intergenic not near genes chr3L 9134323 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-380 971 chr3L 9164693 9164728 chr3L 9166160 9166191 hobo 5 1466 2.0 1.0 1.5 2.0 1498 chr3L 9164693 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166191 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-380 972 chr3L 9219241 9219275 chr3L 9219913 9219946 jockey 15 668 4.5 5.0 4.8 2.6 705 chr3L 9219241 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_15_9215001 chr3L_9215001 RAL-380 973 chr3L 7438460 7438461 chr3L 9307795 9307796 12 1869335 9.0 14.5 11.8 0.9 1869336 chr3L 7438460 intron,3` UTR CG42458 +,sphinx1 - chr3L 8373128 intron ImpE1 + chr3L 9307796 intergenic not near genes chr3L_12_8370001 chr3L_8370001 RAL-380 974 chr3L 9320405 9320425 chr3L 9320486 9320492 4 78 4.0 4.0 4.0 0.8 87 chr3L 9320405 intergenic not near genes chr3L 9320448 intergenic not near genes chr3L 9320492 intergenic not near genes chr3L_4_9320001 chr3L_9320001 RAL-380 975 chr3L 9390854 9390867 chr3L 9390984 9390997 5 130 2.5 2.0 2.2 1.6 143 chr3L 9390854 intron CG4080 - chr3L 9390926 intron CG4080 - chr3L 9390997 intron CG4080 - chr3L_5_9390001 chr3L_9390001 RAL-380 976 chr3L 9443511 9443537 chr3L 9445301 9445328 S-element 7 1789 1.0 1.0 1.0 3.5 1817 chr3L 9443511 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445328 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-380 977 chr3L 9501698 9501731 chr3L 9502184 9502216 roo 8 486 0.5 2.0 1.2 3.6 518 chr3L 9501698 intron path - chr3L 9501957 intron path - chr3L 9502216 intron path - chr3L_8_9500001 chr3L_9500001 RAL-380 978 chr3L 9526484 9526517 chr3L 9528164 9528197 Doc 7 1678 2.5 1.0 1.8 2.5 1713 chr3L 9526484 intergenic not near genes chr3L 9527340 intergenic not near genes chr3L 9528197 intergenic not near genes chr3L_7_9525001 chr3L_9525001 RAL-380 979 chr3L 9533769 9533786 chr3L 9541316 9541346 412 6 7551 2.5 7.5 5.0 1.0 7577 chr3L 9533769 intergenic not near genes chr3L 9537558 intergenic not near genes chr3L 9541346 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-380 980 chr3L 9571899 9571937 chr3L 9572247 9572285 jockey 13 348 1.0 3.0 2.0 4.3 386 chr3L 9571899 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572285 intron CG42673 + chr3L_13_9570001 chr3L_9570001 RAL-380 981 chr3L 9575911 9575944 chr3L 9580989 9581022 jockey 12 5077 3.5 5.0 4.2 2.3 5111 chr3L 9575911 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581022 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-380 982 chr3L 9637857 9637885 chr3L 9637939 9637967 10 81 3.0 3.5 3.2 2.4 110 chr3L 9637857 intron fry - chr3L 9637912 intron fry - chr3L 9637967 intron fry - chr3L_10_9635001 chr3L_9635001 RAL-380 983 chr3L 9646469 9646497 chr3L 9646594 9646597 5 119 3.5 0.5 2.0 1.7 128 chr3L 9646469 intron,intron fry -,CG33696 + chr3L 9646533 intron,intron fry -,CG33696 + chr3L 9646597 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-380 984 chr3L 9732422 9732446 chr3L 9732500 9732524 6 78 3.5 3.0 3.2 1.4 102 chr3L 9732422 exon CG6749 - chr3L 9732473 intron CG6749 - chr3L 9732524 intron CG6749 - chr3L_6_9730001 chr3L_9730001 RAL-380 985 chr3L 9824156 9824180 chr3L 9824234 9824259 6 79 2.5 0.0 1.2 2.7 103 chr3L 9824156 intron CG43897 + chr3L 9824208 intron CG43897 + chr3L 9824259 intron CG43897 + chr3L_6_9820001 chr3L_9820001 RAL-380 986 chr3L 9829051 9829081 chr3L 9829132 9829163 12 80 2.0 4.0 3.0 3.0 112 chr3L 9829051 intron CG43897 + chr3L 9829107 intron CG43897 + chr3L 9829163 intron CG43897 + chr3L_12_9825001 chr3L_9825001 RAL-380 987 chr3L 9918893 9918911 chr3L 9918974 9918987 9 89 2.5 4.0 3.2 2.1 94 chr3L 9918893 intron CG34356 + chr3L 9918940 intron CG34356 + chr3L 9918987 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-380 988 chr3L 10049545 10049572 chr3L 10049624 10049652 10 79 3.0 1.5 2.2 3.1 107 chr3L 10049545 intron dpr6 + chr3L 10049598 intron dpr6 + chr3L 10049652 intron dpr6 + chr3L_10_10045001 chr3L_10045001 RAL-380 989 chr3L 10099181 10099187 chr3L 10099275 10099297 4 108 2.5 3.5 3.0 1.0 116 chr3L 10099181 intron dpr6 + chr3L 10099239 intron dpr6 + chr3L 10099297 intron dpr6 + chr3L_4_10095001 chr3L_10095001 RAL-380 990 chr3L 10161431 10161458 chr3L 10161510 10161534 11 77 1.0 4.5 2.8 2.9 103 chr3L 10161431 intron dpr10 - chr3L 10161482 intron dpr10 - chr3L 10161534 intron dpr10 - chr3L_11_10160001 chr3L_10160001 RAL-380 991 chr3L 10214733 10214829 chr3L 10214820 10214931 7 96 0.0 0.0 0.0 7.0 198 chr3L 10214733 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214931 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-380 992 chr3L 10222767 10222776 chr3L 10222847 10222856 6 80 0.0 7.0 3.5 1.3 89 chr3L 10222767 intron scramb1 - chr3L 10222812 intron scramb1 - chr3L 10222856 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-380 993 chr3L 10308748 10308757 chr3L 10308825 10308833 6 76 5.0 4.5 4.8 1.0 85 chr3L 10308748 intergenic not near genes chr3L 10308790 intergenic not near genes chr3L 10308833 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-380 994 chr3L 10308758 10308771 chr3L 10308822 10308847 4 73 4.0 3.5 3.8 0.8 89 chr3L 10308758 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308847 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-380 995 chr3L 10414952 10414959 chr3L 10417324 10417331 Doc 4 2372 0.0 5.0 2.5 1.1 2379 chr3L 10414952 intergenic CG12362 + chr3L 10416142 intergenic not near genes chr3L 10417331 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-380 996 chr3L 10414962 10414977 chr3L 10417318 10417349 Doc 8 2370 0.0 4.5 2.2 2.5 2387 chr3L 10414962 intergenic CG12362 + chr3L 10416156 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-380 997 chr3L 10423056 10423087 chr3L 10423180 10423212 7 124 4.5 1.5 3.0 1.8 156 chr3L 10423056 intergenic not near genes chr3L 10423134 intergenic not near genes chr3L 10423212 intergenic not near genes chr3L_7_10420001 chr3L_10420001 RAL-380 998 chr3L 10469943 10469965 chr3L 10470019 10470041 6 76 1.5 3.0 2.2 1.9 98 chr3L 10469943 intergenic not near genes chr3L 10469992 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_6_10465001 chr3L_10465001 RAL-380 999 chr3L 10551459 10551484 chr3L 10551546 10551571 6 87 4.0 2.0 3.0 1.5 112 chr3L 10551459 intron A2bp1 + chr3L 10551515 intron A2bp1 + chr3L 10551571 intron A2bp1 + chr3L_6_10550001 chr3L_10550001 RAL-380 1000 chr3L 10553100 10553128 chr3L 10553182 10553207 9 80 2.0 3.0 2.5 2.6 107 chr3L 10553100 intron A2bp1 + chr3L 10553154 intron A2bp1 + chr3L 10553207 intron A2bp1 + chr3L_9_10550001 chr3L_10550001 RAL-380 1001 chr3L 10600455 10600466 chr3L 10600537 10600548 4 82 2.0 1.0 1.5 1.6 93 chr3L 10600455 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600548 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-380 1002 chr3L 10614461 10614479 chr3L 10614537 10614556 4 76 6.0 5.0 5.5 0.6 95 chr3L 10614461 intergenic not near genes chr3L 10614508 intergenic not near genes chr3L 10614556 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-380 1003 chr3L 10658079 10658212 chr3L 10658155 10658338 12 102 1.0 1.0 1.0 6.0 259 chr3L 10658079 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-380 1004 chr3L 10696380 10696394 chr3L 10696462 10696472 4 82 3.0 2.5 2.8 1.1 92 chr3L 10696380 intron NijA - chr3L 10696426 intron NijA - chr3L 10696472 intron NijA - chr3L_4_10695001 chr3L_10695001 RAL-380 1005 chr3L 10705575 10705608 chr3L 10705653 10705686 9 78 1.0 0.5 0.8 5.0 111 chr3L 10705575 intergenic not near genes chr3L 10705630 intergenic not near genes chr3L 10705686 intergenic not near genes chr3L_9_10705001 chr3L_10705001 RAL-380 1006 chr3L 10721990 10722017 chr3L 10722072 10722099 6 82 2.0 0.0 1.0 3.0 109 chr3L 10721990 intergenic not near genes chr3L 10722044 intergenic not near genes chr3L 10722099 intergenic not near genes chr3L_6_10720001 chr3L_10720001 RAL-380 1007 chr3L 10762830 10762860 chr3L 10762914 10762944 7 82 4.0 1.0 2.5 2.0 114 chr3L 10762830 intergenic not near genes chr3L 10762887 intergenic not near genes chr3L 10762944 intergenic not near genes chr3L_7_10760001 chr3L_10760001 RAL-380 1008 chr3L 11042117 11042141 chr3L 11042256 11042280 4 139 2.5 0.0 1.2 1.8 163 chr3L 11042117 intron CG43693 - chr3L 11042198 intron CG43693 - chr3L 11042280 intron CG43693 - chr3L_4_11040001 chr3L_11040001 RAL-380 1009 chr3L 11127216 11127295 chr3L 11127289 11127372 5 76 0.0 0.0 0.0 5.0 156 chr3L 11127216 intron CG42575 + chr3L 11127294 intron CG42575 + chr3L 11127372 intron CG42575 + chr3L_5_11125001 chr3L_11125001 RAL-380 1010 chr3L 11329703 11329727 chr3L 11332895 11332932 jockey 6 3197 3.5 3.5 3.5 1.3 3229 chr3L 11329703 intergenic not near genes chr3L 11331318 intergenic not near genes chr3L 11332932 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-380 1011 chr3L 11435565 11435590 chr3L 11435733 11435759 6 168 1.0 4.0 2.5 1.7 194 chr3L 11435565 intergenic CR44548 +,CG6149 - chr3L 11435662 5` UTR CR44548 + chr3L 11435759 5` UTR CR44548 + chr3L_6_11435001 chr3L_11435001 RAL-380 1012 chr3L 11564788 11564813 chr3L 11572411 11572428 412 9 7619 4.0 6.5 5.2 1.5 7640 chr3L 11564788 exon CG33267 + chr3L 11568608 intron CG33267 + chr3L 11572428 exon CG33267 + chr3L_9_11565001 chr3L_11565001 RAL-380 1013 chr3L 11653820 11653857 chr3L 11653902 11653939 20 73 3.5 1.0 2.2 6.2 119 chr3L 11653820 intron CG32085 - chr3L 11653880 intron CG32085 - chr3L 11653939 exon CG32085 - chr3L_20_11650001 chr3L_11650001 RAL-380 1014 chr3L 11664534 11664545 chr3L 11664645 11664662 5 116 3.5 1.0 2.2 1.6 128 chr3L 11664534 intron CG32085 - chr3L 11664598 intron CG32085 - chr3L 11664662 intron CG32085 - chr3L_5_11660001 chr3L_11660001 RAL-380 1015 chr3L 11744013 11744043 chr3L 11744121 11744149 8 107 4.0 0.0 2.0 2.7 136 chr3L 11744013 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-380 1016 chr3L 11755185 11755195 chr3L 11755264 11755274 6 79 9.0 5.0 7.0 0.8 89 chr3L 11755185 intron CG6024 - chr3L 11755230 intron CG6024 - chr3L 11755274 intron CG6024 - chr3L_6_11755001 chr3L_11755001 RAL-380 1017 chr3L 11864556 11864582 chr3L 11865851 11865877 pogo 8 1294 4.5 3.0 3.8 1.7 1321 chr3L 11864556 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-380 1018 chr3L 11872672 11872689 chr3L 11873008 11873027 4 340 4.5 7.5 6.0 0.6 355 chr3L 11872672 intron CG44837 - chr3L 11872850 intron CG44837 - chr3L 11873027 intron CG44837 - chr3L_4_11870001 chr3L_11870001 RAL-380 1019 chr3L 11886624 11886641 chr3L 11886859 11886876 6 236 3.0 3.5 3.2 1.4 252 chr3L 11886624 intron CG44837 - chr3L 11886750 intron CG44837 - chr3L 11886876 intron CG44837 - chr3L_6_11885001 chr3L_11885001 RAL-380 1020 chr3L 11905127 11905139 chr3L 11905204 11905221 7 81 3.5 3.0 3.2 1.7 94 chr3L 11905127 intron CG44837 - chr3L 11905174 intron CG44837 - chr3L 11905221 intron CG44837 - chr3L_7_11905001 chr3L_11905001 RAL-380 1021 chr3L 12075428 12075445 chr3L 12075517 12075534 5 88 2.5 0.0 1.2 2.3 106 chr3L 12075428 intron Sema-5c - chr3L 12075481 intron Sema-5c - chr3L 12075534 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-380 1022 chr3L 12113604 12113626 chr3L 12113701 12113722 6 97 3.5 2.0 2.8 1.6 118 chr3L 12113604 intergenic not near genes chr3L 12113663 intergenic not near genes chr3L 12113722 intergenic not near genes chr3L_6_12110001 chr3L_12110001 RAL-380 1023 chr3L 12197393 12197416 chr3L 12197475 12197493 10 81 2.0 4.0 3.0 2.5 100 chr3L 12197393 intergenic CG11529 + chr3L 12197443 intergenic CG11529 + chr3L 12197493 intergenic CG11529 + chr3L_10_12195001 chr3L_12195001 RAL-380 1024 chr3L 12304098 12304107 chr3L 12304170 12304183 7 75 3.5 5.0 4.2 1.3 85 chr3L 12304098 intergenic not near genes chr3L 12304140 intergenic not near genes chr3L 12304183 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-380 1025 chr3L 12326379 12326404 chr3L 12326466 12326472 8 82 2.0 0.0 1.0 4.0 93 chr3L 12326379 intergenic not near genes chr3L 12326426 intergenic not near genes chr3L 12326472 intergenic not near genes chr3L_8_12325001 chr3L_12325001 RAL-380 1026 chr3L 12344988 12345001 chr3L 12345072 12345085 4 84 4.5 3.5 4.0 0.8 97 chr3L 12344988 intron CrzR - chr3L 12345036 intron CrzR - chr3L 12345085 intron CrzR - chr3L_4_12345001 chr3L_12345001 RAL-380 1027 chr3L 12353922 12353953 chr3L 12354010 12354028 10 82 1.5 3.5 2.5 2.9 106 chr3L 12353922 intergenic not near genes chr3L 12353975 intergenic not near genes chr3L 12354028 intergenic not near genes chr3L_10_12350001 chr3L_12350001 RAL-380 1028 chr3L 12458488 12458498 chr3L 12458586 12458596 4 98 5.0 1.5 3.2 1.0 108 chr3L 12458488 intergenic not near genes chr3L 12458542 intergenic not near genes chr3L 12458596 intergenic not near genes chr3L_4_12455001 chr3L_12455001 RAL-380 1029 chr3L 12612583 12612604 chr3L 12612676 12612697 9 91 3.5 4.5 4.0 1.8 114 chr3L 12612583 intron caup + chr3L 12612640 intron caup + chr3L 12612697 intron caup + chr3L_9_12610001 chr3L_12610001 RAL-380 1030 chr3L 12647950 12647972 chr3L 12648026 12648048 5 76 5.0 3.0 4.0 1.0 98 chr3L 12647950 5` UTR CR32111 + chr3L 12647999 5` UTR CR32111 + chr3L 12648048 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-380 1031 chr3L 12792145 12792171 chr3L 12792243 12792270 5 98 1.5 1.0 1.2 2.3 125 chr3L 12792145 intron,intron Atg1 -,CG42709 + chr3L 12792208 intron,intron Atg1 -,CG42709 + chr3L 12792270 intron,intron Atg1 -,CG42709 + chr3L_5_12790001 chr3L_12790001 RAL-380 1032 chr3L 12874927 12874961 chr3L 12877219 12877253 jockey 6 2292 0.5 1.5 1.0 3.0 2326 chr3L 12874927 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-380 1033 chr3L 12894811 12894821 chr3L 12894877 12894897 4 73 8.5 7.5 8.0 0.4 86 chr3L 12894811 intergenic CG14118 + chr3L 12894854 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-380 1034 chr3L 12896239 12896261 chr3L 12896315 12896321 5 73 4.5 2.5 3.5 1.1 82 chr3L 12896239 intergenic not near genes chr3L 12896280 intergenic not near genes chr3L 12896321 intergenic not near genes chr3L_5_12895001 chr3L_12895001 RAL-380 1035 chr3L 12919279 12919306 chr3L 12924750 12924776 Rt1c 8 5469 6.0 1.5 3.8 1.7 5497 chr3L 12919279 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-380 1036 chr3L 12942390 12942410 chr3L 12942923 12942950 6 538 5.5 1.5 3.5 1.3 560 chr3L 12942390 intergenic not near genes chr3L 12942670 intergenic not near genes chr3L 12942950 intergenic not near genes chr3L_6_12940001 chr3L_12940001 RAL-380 1037 chr3L 12950102 12950117 chr3L 12950178 12950193 7 75 1.5 4.0 2.8 1.8 91 chr3L 12950102 intergenic not near genes chr3L 12950148 intergenic not near genes chr3L 12950193 intergenic not near genes chr3L_7_12950001 chr3L_12950001 RAL-380 1038 chr3L 12957787 12957812 chr3L 12962269 12962294 copia 4 4482 4.5 7.5 6.0 0.6 4507 chr3L 12957787 intergenic not near genes chr3L 12960040 intergenic not near genes chr3L 12962294 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-380 1039 chr3L 12977747 12977772 chr3L 12977850 12977875 12 102 3.0 3.0 3.0 3.0 128 chr3L 12977747 intergenic not near genes chr3L 12977811 intergenic not near genes chr3L 12977875 intergenic not near genes chr3L_12_12975001 chr3L_12975001 RAL-380 1040 chr3L 13008815 13008827 chr3L 13008957 13008985 6 154 2.5 11.0 6.8 0.8 170 chr3L 13008815 exon CG14117 + chr3L 13008900 intron CG14117 + chr3L 13008985 exon CG14117 + chr3L_6_13005001 chr3L_13005001 RAL-380 1041 chr3L 13074386 13074401 chr3L 13074480 13074495 6 94 4.5 2.5 3.5 1.3 109 chr3L 13074386 intergenic not near genes chr3L 13074440 intergenic not near genes chr3L 13074495 intergenic not near genes chr3L_6_13070001 chr3L_13070001 RAL-380 1042 chr3L 13112567 13112570 chr3L 13112655 13112662 4 94 2.0 0.0 1.0 2.0 95 chr3L 13112567 intergenic not near genes chr3L 13112614 intergenic not near genes chr3L 13112662 intergenic not near genes chr3L_4_13110001 chr3L_13110001 RAL-380 1043 chr3L 13144121 13144139 chr3L 13144198 13144216 6 77 1.5 3.5 2.5 1.7 95 chr3L 13144121 intergenic not near genes chr3L 13144168 intergenic not near genes chr3L 13144216 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-380 1044 chr3L 13194071 13194098 chr3L 13194147 13194156 7 75 0.5 1.5 1.0 3.5 85 chr3L 13194071 intergenic not near genes chr3L 13194114 intergenic not near genes chr3L 13194156 intergenic not near genes chr3L_7_13190001 chr3L_13190001 RAL-380 1045 chr3L 13261814 13261837 chr3L 13261904 13261927 4 90 3.0 4.5 3.8 0.8 113 chr3L 13261814 intron caps + chr3L 13261870 intron caps + chr3L 13261927 intron caps + chr3L_4_13260001 chr3L_13260001 RAL-380 1046 chr3L 13267283 13267300 chr3L 13267395 13267410 7 112 5.5 1.0 3.2 1.7 127 chr3L 13267283 intron caps + chr3L 13267346 intron caps + chr3L 13267410 intron caps + chr3L_7_13265001 chr3L_13265001 RAL-380 1047 chr3L 13303438 13303471 chr3L 13303522 13303555 14 80 5.5 4.0 4.8 2.4 117 chr3L 13303438 5` UTR CR44555 + chr3L 13303496 5` UTR CR44555 + chr3L 13303555 5` UTR CR44555 + chr3L_14_13300001 chr3L_13300001 RAL-380 1048 chr3L 13457917 13457948 chr3L 13458238 13458268 9 316 4.5 3.5 4.0 1.8 351 chr3L 13457917 intron CG10738 + chr3L 13458092 intron CG10738 + chr3L 13458268 intron CG10738 + chr3L_9_13455001 chr3L_13455001 RAL-380 1049 chr3L 13498655 13498673 chr3L 13498736 13498754 5 78 1.5 0.0 0.8 2.8 99 chr3L 13498655 intron Tgi + chr3L 13498704 intron Tgi + chr3L 13498754 intron Tgi + chr3L_5_13495001 chr3L_13495001 RAL-380 1050 chr3L 13525155 13525190 chr3L 13532950 13532983 roo 15 7792 4.5 3.0 3.8 3.1 7828 chr3L 13525155 intergenic not near genes chr3L 13529069 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_15_13525001 chr3L_13525001 RAL-380 1051 chr3L 13582235 13582242 chr3L 13582303 13582332 4 78 3.0 3.0 3.0 1.0 97 chr3L 13582235 intron bru-3 - chr3L 13582284 intron bru-3 - chr3L 13582332 intron bru-3 - chr3L_4_13580001 chr3L_13580001 RAL-380 1052 chr3L 13595026 13595039 chr3L 13595105 13595119 4 80 1.5 4.5 3.0 1.0 93 chr3L 13595026 intron bru-3 - chr3L 13595072 intron bru-3 - chr3L 13595119 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-380 1053 chr3L 13650604 13650624 chr3L 13650683 13650700 6 77 2.0 3.0 2.5 1.7 96 chr3L 13650604 intron bru-3 - chr3L 13650652 intron bru-3 - chr3L 13650700 intron bru-3 - chr3L_6_13650001 chr3L_13650001 RAL-380 1054 chr3L 13774638 13774663 chr3L 13774724 13774736 6 81 3.0 2.5 2.8 1.6 98 chr3L 13774638 intron bru-3 - chr3L 13774687 intron bru-3 - chr3L 13774736 intron bru-3 - chr3L_6_13770001 chr3L_13770001 RAL-380 1055 chr3L 13804545 13804577 chr3L 13822830 13822863 roo 12 18286 2.5 7.0 4.8 2.1 18318 chr3L 13804545 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822863 intergenic not near genes chr3L_12_13810001 chr3L_13810001 RAL-380 1056 chr3L 13841527 13841537 chr3L 13841601 13841617 5 80 5.5 3.0 4.2 1.0 90 chr3L 13841527 exon CG8757 - chr3L 13841572 intron CG8757 - chr3L 13841617 intron CG8757 - chr3L_5_13840001 chr3L_13840001 RAL-380 1057 chr3L 14099425 14099450 chr3L 14099515 14099540 4 90 2.0 5.0 3.5 0.9 115 chr3L 14099425 intergenic not near genes chr3L 14099482 intergenic not near genes chr3L 14099540 intergenic not near genes chr3L_4_14095001 chr3L_14095001 RAL-380 1058 chr3L 14194726 14194738 chr3L 14194802 14194814 7 75 1.5 2.0 1.8 2.5 88 chr3L 14194726 intron nuf + chr3L 14194770 intron nuf + chr3L 14194814 intron nuf + chr3L_7_14190001 chr3L_14190001 RAL-380 1059 chr3L 14266077 14266083 chr3L 14266161 14266169 4 84 0.5 2.0 1.2 1.8 92 chr3L 14266077 intergenic not near genes chr3L 14266123 intergenic not near genes chr3L 14266169 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-380 1060 chr3L 14267370 14267387 chr3L 14271810 14271827 F-element 6 4440 6.0 3.0 4.5 1.1 4457 chr3L 14267370 intergenic not near genes chr3L 14269598 intergenic not near genes chr3L 14271827 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-380 1061 chr3L 14282597 14282605 chr3L 14282676 14282685 4 80 3.5 12.0 7.8 0.5 88 chr3L 14282597 intron fz + chr3L 14282641 intron fz + chr3L 14282685 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-380 1062 chr3L 14295980 14296014 chr3L 14296466 14296500 roo 7 484 3.0 3.5 3.2 1.7 520 chr3L 14295980 intron fz + chr3L 14296240 intron fz + chr3L 14296500 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-380 1063 chr3L 14312041 14312060 chr3L 14316834 14316856 X-element 8 4795 2.0 3.5 2.8 2.1 4815 chr3L 14312041 exon fz + chr3L 14314448 intron fz + chr3L 14316856 intron fz + chr3L_8_14310001 chr3L_14310001 RAL-380 1064 chr3L 14326969 14326996 chr3L 14327105 14327132 4 132 2.0 3.5 2.8 1.1 163 chr3L 14326969 intron fz + chr3L 14327050 intron fz + chr3L 14327132 intron fz + chr3L_4_14325001 chr3L_14325001 RAL-380 1065 chr3L 14356519 14356544 chr3L 14356599 14356623 11 77 5.5 3.5 4.5 2.0 104 chr3L 14356519 intron fz + chr3L 14356571 intron fz + chr3L 14356623 intron fz + chr3L_11_14355001 chr3L_14355001 RAL-380 1066 chr3L 14444720 14444747 chr3L 14444895 14444921 9 174 4.0 3.0 3.5 2.0 201 chr3L 14444720 intron bbg - chr3L 14444820 intron bbg - chr3L 14444921 intron bbg - chr3L_9_14440001 chr3L_14440001 RAL-380 1067 chr3L 14468446 14468473 chr3L 14473652 14473677 copia 4 5206 3.5 2.0 2.8 1.1 5231 chr3L 14468446 intron bbg - chr3L 14471062 intron bbg - chr3L 14473677 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-380 1068 chr3L 14486161 14486172 chr3L 14486237 14486249 4 77 0.0 4.5 2.2 1.2 88 chr3L 14486161 intron bbg - chr3L 14486205 intron bbg - chr3L 14486249 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-380 1069 chr3L 14522104 14522128 chr3L 14522202 14522227 7 99 3.0 4.5 3.8 1.5 123 chr3L 14522104 intron bbg - chr3L 14522166 intron bbg - chr3L 14522227 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-380 1070 chr3L 14549565 14549595 chr3L 14549657 14549688 7 93 1.0 2.5 1.8 2.5 123 chr3L 14549565 intron CG9238 - chr3L 14549626 intron CG9238 - chr3L 14549688 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-380 1071 chr3L 14565751 14565777 chr3L 14565842 14565868 4 91 0.0 2.0 1.0 2.0 117 chr3L 14565751 intergenic not near genes chr3L 14565810 intergenic not near genes chr3L 14565868 intergenic not near genes chr3L_4_14565001 chr3L_14565001 RAL-380 1072 chr3L 14584158 14584179 chr3L 14584245 14584266 8 86 2.5 5.0 3.8 1.7 108 chr3L 14584158 intron HGTX - chr3L 14584212 intron HGTX - chr3L 14584266 intron HGTX - chr3L_8_14580001 chr3L_14580001 RAL-380 1073 chr3L 14693540 14693572 chr3L 14693639 14693671 13 97 4.5 3.0 3.8 2.7 131 chr3L 14693540 intron ome + chr3L 14693606 intron ome + chr3L 14693671 intron ome + chr3L_13_14690001 chr3L_14690001 RAL-380 1074 chr3L 14709146 14709168 chr3L 14711605 14711627 4 2461 10.5 25.5 18.0 0.2 2481 chr3L 14709146 intron ome + chr3L 14710386 intron ome + chr3L 14711627 intron ome + chr3L_4_14710001 chr3L_14710001 RAL-380 1075 chr3L 14724811 14724834 chr3L 14724894 14724917 4 83 0.0 1.5 0.8 2.2 106 chr3L 14724811 intron ome + chr3L 14724864 intron ome + chr3L 14724917 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-380 1076 chr3L 14725601 14725631 chr3L 14728595 14728622 Doc 7 2993 0.0 4.0 2.0 2.3 3021 chr3L 14725601 intron ome + chr3L 14727112 intron ome + chr3L 14728622 intron ome + chr3L_7_14725001 chr3L_14725001 RAL-380 1077 chr3L 14740889 14740922 chr3L 14740978 14741010 8 88 3.0 3.0 3.0 2.0 121 chr3L 14740889 intron ome + chr3L 14740950 intron ome + chr3L 14741010 intron ome + chr3L_8_14740001 chr3L_14740001 RAL-380 1078 chr3L 14855584 14855615 chr3L 14855672 14855703 14 87 3.0 2.5 2.8 3.7 119 chr3L 14855584 intron CG17839 + chr3L 14855644 intron CG17839 + chr3L 14855703 intron CG17839 + chr3L_14_14855001 chr3L_14855001 RAL-380 1079 chr3L 14863791 14863816 chr3L 14863888 14863909 6 96 4.0 1.0 2.5 1.7 118 chr3L 14863791 intron CG17839 + chr3L 14863850 intron CG17839 + chr3L 14863909 intron CG17839 + chr3L_6_14860001 chr3L_14860001 RAL-380 1080 chr3L 14911046 14911056 chr3L 14911120 14911134 6 76 0.5 0.5 0.5 4.0 88 chr3L 14911046 intron DCX-EMAP + chr3L 14911090 intron DCX-EMAP + chr3L 14911134 intron DCX-EMAP + chr3L_6_14910001 chr3L_14910001 RAL-380 1081 chr3L 14944935 14944964 chr3L 14946695 14946724 9 1759 0.5 1.5 1.0 4.5 1789 chr3L 14944935 intergenic not near genes chr3L 14945830 3` UTR BobA - chr3L 14946724 intergenic not near genes chr3L_9_14945001 chr3L_14945001 RAL-380 1082 chr3L 15085048 15085081 chr3L 15086213 15086245 1360 9 1164 4.5 1.5 3.0 2.2 1197 chr3L 15085048 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086245 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-380 1083 chr3L 15171575 15171589 chr3L 15171819 15171833 5 244 1.5 0.5 1.0 2.5 258 chr3L 15171575 intergenic not near genes chr3L 15171704 intergenic not near genes chr3L 15171833 intergenic not near genes chr3L_5_15170001 chr3L_15170001 RAL-380 1084 chr3L 15215641 15215668 chr3L 15215741 15215768 5 99 5.5 2.0 3.8 1.0 127 chr3L 15215641 intergenic not near genes chr3L 15215704 intergenic not near genes chr3L 15215768 intergenic not near genes chr3L_5_15215001 chr3L_15215001 RAL-380 1085 chr3L 15272236 15272264 chr3L 15272313 15272342 9 76 3.5 1.5 2.5 2.6 106 chr3L 15272236 intergenic not near genes chr3L 15272289 intergenic not near genes chr3L 15272342 intergenic not near genes chr3L_9_15270001 chr3L_15270001 RAL-380 1086 chr3L 15295770 15295788 chr3L 15298613 15298631 gypsy5 4 2842 4.0 3.0 3.5 0.9 2861 chr3L 15295770 intergenic not near genes chr3L 15297200 intergenic not near genes chr3L 15298631 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-380 1087 chr3L 15333146 15333170 chr3L 15333226 15333252 6 81 2.0 3.0 2.5 1.7 106 chr3L 15333146 intergenic CR43247 + chr3L 15333199 intergenic CR43247 + chr3L 15333252 intergenic CR43247 + chr3L_6_15330001 chr3L_15330001 RAL-380 1088 chr3L 15347410 15347442 chr3L 15347485 15347518 13 74 2.5 3.0 2.8 3.4 108 chr3L 15347410 intergenic not near genes chr3L 15347464 intergenic not near genes chr3L 15347518 intergenic not near genes chr3L_13_15345001 chr3L_15345001 RAL-380 1089 chr3L 15384957 15384981 chr3L 15385085 15385086 10 126 6.0 1.5 3.8 2.1 129 chr3L 15384957 intergenic not near genes chr3L 15385022 intergenic not near genes chr3L 15385086 intergenic not near genes chr3L_10_15385001 chr3L_15385001 RAL-380 1090 chr3L 15393664 15393694 chr3L 15393866 15393894 11 202 0.5 4.5 2.5 3.1 230 chr3L 15393664 intergenic not near genes chr3L 15393779 intergenic not near genes chr3L 15393894 intergenic not near genes chr3L_11_15390001 chr3L_15390001 RAL-380 1091 chr3L 15400823 15400839 chr3L 15400949 15400965 4 126 1.0 0.5 0.8 2.2 142 chr3L 15400823 intergenic not near genes chr3L 15400894 intergenic not near genes chr3L 15400965 intergenic not near genes chr3L_4_15400001 chr3L_15400001 RAL-380 1092 chr3L 15423760 15423775 chr3L 15426604 15426619 opus 4 2844 4.0 1.5 2.8 1.1 2859 chr3L 15423760 intergenic not near genes chr3L 15425190 intergenic not near genes chr3L 15426619 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-380 1093 chr3L 15443589 15443607 chr3L 15443665 15443683 6 74 3.5 1.5 2.5 1.7 94 chr3L 15443589 intergenic not near genes chr3L 15443636 intergenic not near genes chr3L 15443683 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-380 1094 chr3L 15466041 15466128 chr3L 15466123 15466224 4 85 0.0 0.0 0.0 4.0 183 chr3L 15466041 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466224 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-380 1095 chr3L 15482423 15482447 chr3L 15482514 15482539 6 92 3.0 1.5 2.2 1.9 116 chr3L 15482423 intergenic not near genes chr3L 15482481 intergenic not near genes chr3L 15482539 intergenic not near genes chr3L_6_15480001 chr3L_15480001 RAL-380 1096 chr3L 15493316 15493336 chr3L 15493410 15493410 4 90 2.5 0.0 1.2 1.8 94 chr3L 15493316 exon CG12355 - chr3L 15493363 intron CG12355 - chr3L 15493410 intron CG12355 - chr3L_4_15490001 chr3L_15490001 RAL-380 1097 chr3L 15541618 15541636 chr3L 15541707 15541727 6 90 10.0 1.5 5.8 0.9 109 chr3L 15541618 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541727 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-380 1098 chr3L 15541949 15541970 chr3L 15542043 15542064 4 94 0.5 2.0 1.2 1.8 115 chr3L 15541949 intron CrebA + chr3L 15542006 intron CrebA + chr3L 15542064 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-380 1099 chr3L 15616135 15616155 chr3L 15616221 15616241 6 86 4.0 5.5 4.8 1.0 106 chr3L 15616135 intron comm3 - chr3L 15616188 intron comm3 - chr3L 15616241 intron comm3 - chr3L_6_15615001 chr3L_15615001 RAL-380 1100 chr3L 15641809 15641812 chr3L 15641894 15641897 4 85 0.0 4.5 2.2 1.2 88 chr3L 15641809 intron comm3 - chr3L 15641853 intron comm3 - chr3L 15641897 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-380 1101 chr3L 15713045 15713073 chr3L 15713193 15713203 9 145 0.0 6.0 3.0 2.2 158 chr3L 15713045 intergenic not near genes chr3L 15713124 intergenic not near genes chr3L 15713203 intergenic not near genes chr3L_9_15710001 chr3L_15710001 RAL-380 1102 chr3L 15756878 15756908 chr3L 15756961 15756989 7 79 5.0 0.5 2.8 1.8 111 chr3L 15756878 intergenic not near genes chr3L 15756934 intergenic not near genes chr3L 15756989 intergenic not near genes chr3L_7_15755001 chr3L_15755001 RAL-380 1103 chr3L 15832262 15832282 chr3L 15832343 15832363 7 81 1.5 7.0 4.2 1.3 101 chr3L 15832262 intergenic CG12713 +,dbo + chr3L 15832312 intergenic CG12713 +,dbo + chr3L 15832363 intergenic CG12713 +,dbo + chr3L_7_15830001 chr3L_15830001 RAL-380 1104 chr3L 15899233 15899253 chr3L 15899800 15899811 jockey 4 560 1.5 5.5 3.5 0.9 578 chr3L 15899233 intergenic pHCl - chr3L 15899522 intergenic pHCl - chr3L 15899811 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-380 1105 chr3L 16051201 16051230 chr3L 16051566 16051595 7 361 2.0 1.5 1.8 2.5 394 chr3L 16051201 intergenic th - chr3L 16051398 intergenic th - chr3L 16051595 intergenic Mbs + chr3L_7_16050001 chr3L_16050001 RAL-380 1106 chr3L 16162601 16162621 chr3L 16162684 16162694 7 82 2.5 5.0 3.8 1.5 93 chr3L 16162601 intron CG5151 - chr3L 16162648 intron CG5151 - chr3L 16162694 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-380 1107 chr3L 16184105 16184137 chr3L 16188921 16188956 X-element 7 4819 1.5 2.5 2.0 2.3 4851 chr3L 16184105 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188956 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-380 1108 chr3L 16220505 16220509 chr3L 16220590 16220592 4 84 0.0 1.5 0.8 2.2 87 chr3L 16220505 intergenic not near genes chr3L 16220548 intergenic not near genes chr3L 16220592 intergenic not near genes chr3L_4_16220001 chr3L_16220001 RAL-380 1109 chr3L 16273753 16273777 chr3L 16273829 16273852 5 76 4.0 4.0 4.0 1.0 99 chr3L 16273753 intergenic CG13066 + chr3L 16273802 intergenic CG13066 + chr3L 16273852 intergenic CG13066 + chr3L_5_16270001 chr3L_16270001 RAL-380 1110 chr3L 16322832 16322857 chr3L 16322912 16322946 10 86 1.5 5.0 3.2 2.4 114 chr3L 16322832 intergenic not near genes chr3L 16322889 intergenic not near genes chr3L 16322946 intergenic not near genes chr3L_10_16320001 chr3L_16320001 RAL-380 1111 chr3L 16360894 16360917 chr3L 16360962 16360987 6 74 4.5 5.0 4.8 1.0 93 chr3L 16360894 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360987 intron CG45057 - chr3L_6_16360001 chr3L_16360001 RAL-380 1112 chr3L 16400725 16400753 chr3L 16400805 16400836 11 83 3.0 4.5 3.8 2.3 111 chr3L 16400725 intergenic CG44836 - chr3L 16400780 intergenic not near genes chr3L 16400836 intergenic not near genes chr3L_11_16400001 chr3L_16400001 RAL-380 1113 chr3L 16443852 16443873 chr3L 16446192 16446210 Doc 7 2339 5.5 6.0 5.8 1.0 2358 chr3L 16443852 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446210 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-380 1114 chr3L 16457530 16457555 chr3L 16457624 16457649 6 94 2.0 5.0 3.5 1.3 119 chr3L 16457530 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457649 intron CG33158 + chr3L_6_16455001 chr3L_16455001 RAL-380 1115 chr3L 16493976 16494012 chr3L 16494493 16494522 jockey 17 516 2.0 5.5 3.8 3.5 546 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494249 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494522 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_17_16490001 chr3L_16490001 RAL-380 1116 chr3L 16503556 16503583 chr3L 16503793 16503804 12 237 3.5 6.0 4.8 2.1 248 chr3L 16503556 intron CG43373 - chr3L 16503680 intron CG43373 - chr3L 16503804 intron CG43373 - chr3L_12_16500001 chr3L_16500001 RAL-380 1117 chr3L 16506672 16506695 chr3L 16506862 16506883 4 191 1.0 3.0 2.0 1.3 211 chr3L 16506672 intron CG43373 - chr3L 16506778 intron CG43373 - chr3L 16506883 intron CG43373 - chr3L_4_16505001 chr3L_16505001 RAL-380 1118 chr3L 16533248 16533279 chr3L 16533335 16533367 5 88 1.5 0.0 0.8 2.8 119 chr3L 16533248 intron CG43373 - chr3L 16533308 intron CG43373 - chr3L 16533367 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-380 1119 chr3L 16540058 16540084 chr3L 16540146 16540172 9 88 3.5 4.0 3.8 1.9 114 chr3L 16540058 intron CG43373 - chr3L 16540115 intron CG43373 - chr3L 16540172 intron CG43373 - chr3L_9_16540001 chr3L_16540001 RAL-380 1120 chr3L 16610683 16610712 chr3L 16610768 16610797 8 85 2.5 1.0 1.8 2.9 114 chr3L 16610683 3` UTR Su(P) - chr3L 16610740 exon Su(P) - chr3L 16610797 exon Su(P) - chr3L_8_16610001 chr3L_16610001 RAL-380 1121 chr3L 16616514 16616543 chr3L 16621837 16621871 297 5 5325 3.5 3.0 3.2 1.2 5357 chr3L 16616514 3` UTR Abl - chr3L 16619192 3` UTR Abl - chr3L 16621871 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-380 1122 chr3L 16748765 16748788 chr3L 16748843 16748870 7 77 2.0 0.0 1.0 3.5 105 chr3L 16748765 intergenic not near genes chr3L 16748818 intergenic not near genes chr3L 16748870 intergenic not near genes chr3L_7_16745001 chr3L_16745001 RAL-380 1123 chr3L 16759030 16759046 chr3L 16759103 16759124 5 76 5.0 1.0 3.0 1.2 94 chr3L 16759030 intergenic not near genes chr3L 16759077 intergenic not near genes chr3L 16759124 intergenic not near genes chr3L_5_16755001 chr3L_16755001 RAL-380 1124 chr3L 16808042 16808061 chr3L 16808118 16808137 6 76 1.5 0.0 0.8 3.3 95 chr3L 16808042 intron nudC + chr3L 16808090 intron nudC + chr3L 16808137 intron nudC + chr3L_6_16805001 chr3L_16805001 RAL-380 1125 chr3L 16817876 16817906 chr3L 16818015 16818035 10 136 6.5 1.5 4.0 2.0 159 chr3L 16817876 intron,intron nudC +,CG13024 - chr3L 16817956 intron,intron nudC +,CG13024 - chr3L 16818035 intron,intron nudC +,CG13024 - chr3L_10_16815001 chr3L_16815001 RAL-380 1126 chr3L 16818749 16818777 chr3L 16818821 16818825 5 60 3.0 0.0 1.5 2.0 76 chr3L 16818749 intron,intron nudC +,CG13024 - chr3L 16818787 intron,intron nudC +,CG13024 - chr3L 16818825 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-380 1127 chr3L 16845029 16845037 chr3L 16845142 16845149 4 113 4.5 3.5 4.0 0.8 120 chr3L 16845029 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845089 intergenic CG9669 -,CG9715 + chr3L 16845149 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-380 1128 chr3L 16861028 16861054 chr3L 16861129 16861156 10 101 3.0 3.0 3.0 2.5 128 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861156 intron,exon Rh4 -,CG13029 + chr3L_10_16860001 chr3L_16860001 RAL-380 1129 chr3L 16866374 16866394 chr3L 16866454 16866473 5 80 2.0 0.0 1.0 2.5 99 chr3L 16866374 intron Lmpt + chr3L 16866424 intron Lmpt + chr3L 16866473 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-380 1130 chr3L 16875961 16875976 chr3L 16876057 16876073 4 97 6.5 1.0 3.8 0.8 112 chr3L 16875961 intron Lmpt + chr3L 16876017 intron Lmpt + chr3L 16876073 intron Lmpt + chr3L_4_16875001 chr3L_16875001 RAL-380 1131 chr3L 16945728 16945761 chr3L 16954878 16954882 roo 10 9149 7.0 3.5 5.2 1.6 9154 chr3L 16945728 exon Obp73a + chr3L 16950305 intergenic not near genes chr3L 16954882 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-380 1132 chr3L 17026789 17026819 chr3L 17026869 17026900 12 80 5.0 1.5 3.2 2.9 111 chr3L 17026789 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026900 3` UTR Fit2 + chr3L_12_17025001 chr3L_17025001 RAL-380 1133 chr3L 17027165 17027182 chr3L 17027257 17027274 6 92 0.0 1.5 0.8 3.3 109 chr3L 17027165 intergenic Fit2 +,CG7730 + chr3L 17027220 intergenic Fit2 +,CG7730 + chr3L 17027274 intergenic Fit2 +,CG7730 + chr3L_6_17025001 chr3L_17025001 RAL-380 1134 chr3L 17085004 17085035 chr3L 17094153 17094182 roo 15 9148 2.5 5.5 4.0 3.0 9178 chr3L 17085004 intron Rbp6 - chr3L 17089593 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_15_17085001 chr3L_17085001 RAL-380 1135 chr3L 17237384 17237409 chr3L 17237536 17237561 6 152 2.5 2.5 2.5 1.7 177 chr3L 17237384 intron Rbp6 - chr3L 17237472 intron Rbp6 - chr3L 17237561 intron Rbp6 - chr3L_6_17235001 chr3L_17235001 RAL-380 1136 chr3L 17316457 17316480 chr3L 17316567 17316567 7 103 1.5 3.5 2.5 2.0 110 chr3L 17316457 intergenic not near genes chr3L 17316512 intergenic not near genes chr3L 17316567 intergenic not near genes chr3L_7_17315001 chr3L_17315001 RAL-380 1137 chr3L 17461112 17461124 chr3L 17461197 17461210 8 85 2.5 5.0 3.8 1.7 98 chr3L 17461112 intergenic not near genes chr3L 17461161 intergenic not near genes chr3L 17461210 intergenic not near genes chr3L_8_17460001 chr3L_17460001 RAL-380 1138 chr3L 17510744 17510766 chr3L 17510828 17510850 8 80 3.0 6.5 4.8 1.4 106 chr3L 17510744 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_8_17510001 chr3L_17510001 RAL-380 1139 chr3L 17538362 17538369 chr3L 17538422 17538444 5 73 5.5 4.5 5.0 0.8 82 chr3L 17538362 intron Nedd4 + chr3L 17538403 intron Nedd4 + chr3L 17538444 intron Nedd4 + chr3L_5_17535001 chr3L_17535001 RAL-380 1140 chr3L 17580585 17580610 chr3L 17580761 17580785 6 176 5.0 1.0 3.0 1.5 200 chr3L 17580585 intron Eip74EF - chr3L 17580685 intron Eip74EF - chr3L 17580785 intron Eip74EF - chr3L_6_17580001 chr3L_17580001 RAL-380 1141 chr3L 17659728 17659744 chr3L 17659805 17659821 6 76 2.0 1.0 1.5 2.4 93 chr3L 17659728 intergenic Crtc - chr3L 17659774 intergenic Crtc - chr3L 17659821 3` UTR Crtc - chr3L_6_17655001 chr3L_17655001 RAL-380 1142 chr3L 17799810 17799841 chr3L 17801597 17801626 S-element 5 1787 1.0 1.5 1.2 2.3 1816 chr3L 17799810 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801626 intron NUCB1 - chr3L_5_17800001 chr3L_17800001 RAL-380 1143 chr3L 17837625 17837648 chr3L 17837713 17837736 7 87 2.0 4.0 3.0 1.8 111 chr3L 17837625 exon Grd + chr3L 17837680 intron Grd + chr3L 17837736 intron Grd + chr3L_7_17835001 chr3L_17835001 RAL-380 1144 chr3L 18036127 18036153 chr3L 18036201 18036237 20 76 0.5 6.0 3.2 4.8 110 chr3L 18036127 intron Eip75B - chr3L 18036182 intron Eip75B - chr3L 18036237 intron Eip75B - chr3L_20_18035001 chr3L_18035001 RAL-380 1145 chr3L 18047707 18047738 chr3L 18056763 18056795 roo 8 9057 3.5 2.0 2.8 2.1 9088 chr3L 18047707 intron Eip75B - chr3L 18052251 intron Eip75B - chr3L 18056795 intron Eip75B - chr3L_8_18050001 chr3L_18050001 RAL-380 1146 chr3L 18092134 18092143 chr3L 18092216 18092225 4 82 0.0 2.5 1.2 1.8 91 chr3L 18092134 intron CG13698 - chr3L 18092180 intron CG13698 - chr3L 18092225 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-380 1147 chr3L 18198929 18198931 chr3L 24821492 24821494 8 6622563 0.0 12.0 6.0 1.1 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_8_21510001 chr3L_21510001 RAL-380 1148 chr3L 18223168 18223186 chr3L 18223251 18223261 5 81 3.5 0.0 1.8 1.8 93 chr3L 18223168 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223261 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-380 1149 chr3L 18258865 18258880 chr3L 18258991 18259004 6 125 2.5 2.5 2.5 1.7 139 chr3L 18258865 intergenic not near genes chr3L 18258934 intergenic not near genes chr3L 18259004 intergenic not near genes chr3L_6_18255001 chr3L_18255001 RAL-380 1150 chr3L 18262474 18262488 chr3L 18262557 18262571 5 83 2.5 1.0 1.8 1.8 97 chr3L 18262474 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262571 intergenic not near genes chr3L_5_18260001 chr3L_18260001 RAL-380 1151 chr3L 18306956 18306985 chr3L 18307040 18307068 7 84 2.0 6.0 4.0 1.4 112 chr3L 18306956 intergenic not near genes chr3L 18307012 intergenic not near genes chr3L 18307068 intergenic not near genes chr3L_7_18305001 chr3L_18305001 RAL-380 1152 chr3L 9013689 9013694 chr3L 18417066 18417066 4 9403374 28.5 18.0 23.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-380 1153 chr3L 18436063 18436087 chr3L 18436161 18436185 4 96 1.5 0.0 0.8 2.2 122 chr3L 18436063 intergenic not near genes chr3L 18436124 intergenic not near genes chr3L 18436185 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-380 1154 chr3L 18445249 18445283 chr3L 18445326 18445358 4 77 2.5 0.5 1.5 1.6 109 chr3L 18445249 intergenic not near genes chr3L 18445304 intergenic not near genes chr3L 18445358 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-380 1155 chr3L 18456275 18456299 chr3L 18456362 18456387 9 87 4.5 0.0 2.2 2.8 112 chr3L 18456275 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456387 intergenic CR44670 - chr3L_9_18455001 chr3L_18455001 RAL-380 1156 chr3L 18506129 18506158 chr3L 18509592 18509621 F-element 8 3462 2.5 3.5 3.0 2.0 3492 chr3L 18506129 intergenic not near genes chr3L 18507875 intergenic not near genes chr3L 18509621 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-380 1157 chr3L 18528631 18528651 chr3L 18537792 18537812 roo 8 9161 2.0 1.5 1.8 2.9 9181 chr3L 18528631 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537812 intergenic not near genes chr3L_8_18530001 chr3L_18530001 RAL-380 1158 chr3L 18546703 18546723 chr3L 18546797 18546817 8 93 4.0 5.0 4.5 1.5 114 chr3L 18546703 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546817 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-380 1159 chr3L 18586573 18586594 chr3L 18586671 18586693 14 97 3.5 3.5 3.5 3.1 120 chr3L 18586573 intergenic not near genes chr3L 18586633 intergenic not near genes chr3L 18586693 intergenic not near genes chr3L_14_18585001 chr3L_18585001 RAL-380 1160 chr3L 18602628 18602660 chr3L 18602712 18602733 9 82 1.5 0.0 0.8 5.0 105 chr3L 18602628 intron,intron CG13380 -,CG4174 - chr3L 18602680 intron,intron CG13380 -,CG4174 - chr3L 18602733 intron,intron CG13380 -,CG4174 - chr3L_9_18600001 chr3L_18600001 RAL-380 1161 chr3L 18638574 18638582 chr3L 18638668 18638675 4 94 1.0 0.5 0.8 2.2 101 chr3L 18638574 intron MYPT-75D + chr3L 18638624 intron MYPT-75D + chr3L 18638675 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-380 1162 chr3L 18691434 18691449 chr3L 18691498 18691522 7 73 3.5 1.0 2.2 2.2 88 chr3L 18691434 intergenic not near genes chr3L 18691478 intergenic not near genes chr3L 18691522 intergenic not near genes chr3L_7_18690001 chr3L_18690001 RAL-380 1163 chr3L 18721772 18721801 chr3L 18721862 18721891 8 90 1.0 3.0 2.0 2.7 119 chr3L 18721772 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721891 intergenic CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-380 1164 chr3L 18772406 18772442 chr3L 18781087 18781123 roo 18 8681 4.0 1.0 2.5 5.1 8717 chr3L 18772406 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781123 intron ftz-f1 - chr3L_18_18775001 chr3L_18775001 RAL-380 1165 chr3L 18833779 18833813 chr3L 18834943 18834972 1360 7 1161 2.0 2.5 2.2 2.2 1193 chr3L 18833779 intron Indy - chr3L 18834376 intron Indy - chr3L 18834972 intron Indy - chr3L_7_18830001 chr3L_18830001 RAL-380 1166 chr3L 18878672 18878698 chr3L 18878754 18878780 6 82 2.0 2.0 2.0 2.0 108 chr3L 18878672 3` UTR CG3961 - chr3L 18878726 3` UTR CG3961 - chr3L 18878780 3` UTR CG3961 - chr3L_6_18875001 chr3L_18875001 RAL-380 1167 chr3L 18929956 18929983 chr3L 18930040 18930067 7 84 3.0 1.5 2.2 2.2 111 chr3L 18929956 intron CG32204 - chr3L 18930012 intron CG32204 - chr3L 18930067 exon CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-380 1168 chr3L 18933628 18933660 chr3L 18933722 18933753 8 94 2.5 3.5 3.0 2.0 125 chr3L 18933628 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-380 1169 chr3L 18958607 18958617 chr3L 18958682 18958693 5 75 1.5 3.0 2.2 1.6 86 chr3L 18958607 intergenic not near genes chr3L 18958650 intergenic not near genes chr3L 18958693 intergenic not near genes chr3L_5_18955001 chr3L_18955001 RAL-380 1170 chr3L 19008840 19008868 chr3L 19009177 19009202 jockey 10 335 1.0 4.0 2.5 2.9 362 chr3L 19008840 intron nkd - chr3L 19009021 intron nkd - chr3L 19009202 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-380 1171 chr3L 19074747 19074777 chr3L 19075189 19075219 8 442 4.0 3.0 3.5 1.8 472 chr3L 19074747 intron Mkp3 - chr3L 19074983 intron Mkp3 - chr3L 19075219 intron Mkp3 - chr3L_8_19070001 chr3L_19070001 RAL-380 1172 chr3L 19115649 19115670 chr3L 19115825 19115831 BS 10 175 3.5 3.5 3.5 2.2 182 chr3L 19115649 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115831 intron CG14082 - chr3L_10_19115001 chr3L_19115001 RAL-380 1173 chr3L 19117045 19117059 chr3L 19124491 19124506 mdg1 6 7444 7.0 4.0 5.5 0.9 7461 chr3L 19117045 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124506 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-380 1174 chr3L 19117060 19117075 chr3L 19124490 19124521 mdg1 7 7444 2.5 4.0 3.2 1.7 7461 chr3L 19117060 intron CG14082 - chr3L 19120790 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-380 1175 chr3L 19133677 19133701 chr3L 19133759 19133785 8 84 2.0 4.5 3.2 1.9 108 chr3L 19133677 intron CG14082 - chr3L 19133731 intron CG14082 - chr3L 19133785 intron CG14082 - chr3L_8_19130001 chr3L_19130001 RAL-380 1176 chr3L 19159853 19159869 chr3L 19159948 19159964 5 92 3.5 2.5 3.0 1.2 111 chr3L 19159853 intron fz2 - chr3L 19159908 intron fz2 - chr3L 19159964 intron fz2 - chr3L_5_19155001 chr3L_19155001 RAL-380 1177 chr3L 19173739 19173744 chr3L 19173873 19173894 6 144 3.5 3.0 3.2 1.4 155 chr3L 19173739 intron fz2 - chr3L 19173816 intron fz2 - chr3L 19173894 intron fz2 - chr3L_6_19170001 chr3L_19170001 RAL-380 1178 chr3L 19182401 19182414 chr3L 19182474 19182495 4 75 3.0 1.5 2.2 1.2 94 chr3L 19182401 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182495 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-380 1179 chr3L 19208061 19208091 chr3L 19209435 19209465 Doc 9 1373 2.5 6.5 4.5 1.6 1404 chr3L 19208061 intron fz2 - chr3L 19208763 intron fz2 - chr3L 19209465 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-380 1180 chr3L 19210114 19210140 chr3L 19210210 19210231 4 94 0.0 0.5 0.2 3.3 117 chr3L 19210114 intron fz2 - chr3L 19210172 intron fz2 - chr3L 19210231 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-380 1181 chr3L 19244112 19244138 chr3L 19244190 19244216 11 77 6.0 5.0 5.5 1.7 104 chr3L 19244112 intergenic not near genes chr3L 19244164 intergenic not near genes chr3L 19244216 intergenic not near genes chr3L_11_19240001 chr3L_19240001 RAL-380 1182 chr3L 19262220 19262238 chr3L 19262294 19262317 5 80 0.0 2.5 1.2 2.3 97 chr3L 19262220 3` UTR Bet1 + chr3L 19262268 3` UTR,3` UTR Bet1 +,Max - chr3L 19262317 3` UTR,3` UTR Bet1 +,Max - chr3L_5_19260001 chr3L_19260001 RAL-380 1183 chr3L 19279673 19279686 chr3L 19279765 19279778 6 90 10.0 2.0 6.0 0.9 105 chr3L 19279673 intron CG14086 + chr3L 19279726 exon CG14086 + chr3L 19279778 exon CG14086 + chr3L_6_19275001 chr3L_19275001 RAL-380 1184 chr3L 19365924 19365927 chr3L 19366020 19366024 4 97 0.0 3.5 1.8 1.4 100 chr3L 19365924 intron CG32206 - chr3L 19365974 intron CG32206 - chr3L 19366024 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-380 1185 chr3L 19390730 19390760 chr3L 19390828 19390855 6 97 1.0 3.0 2.0 2.0 125 chr3L 19390730 intron CG32206 - chr3L 19390792 intron CG32206 - chr3L 19390855 intron CG32206 - chr3L_6_19390001 chr3L_19390001 RAL-380 1186 chr3L 19498432 19498454 chr3L 19503658 19503680 9 5226 23.5 27.5 25.5 0.3 5248 chr3L 19498432 3` UTR CG9451 - chr3L 19501056 3` UTR CG9452 - chr3L 19503680 5` UTR CG9452 - chr3L_9_19500001 chr3L_19500001 RAL-380 1187 chr3L 19527931 19527951 chr3L 19528010 19528030 6 78 3.5 3.0 3.2 1.4 99 chr3L 19527931 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528030 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-380 1188 chr3L 19785460 19785473 chr3L 19785537 19785551 4 77 8.0 3.0 5.5 0.6 91 chr3L 19785460 intron,intron CG42637 -,Gyc76C - chr3L 19785506 intron,intron CG42637 -,Gyc76C - chr3L 19785551 intron,intron CG42637 -,Gyc76C - chr3L_4_19785001 chr3L_19785001 RAL-380 1189 chr3L 19820309 19820318 chr3L 19827857 19827867 412 5 7548 3.0 1.5 2.2 1.6 7558 chr3L 19820309 intron Deaf1 + chr3L 19824088 intron Deaf1 + chr3L 19827867 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-380 1190 chr3L 19848515 19848534 chr3L 19857705 19857721 roo 6 9187 3.5 7.5 5.5 0.9 9206 chr3L 19848515 intron Papss + chr3L 19853118 intron Papss + chr3L 19857721 intron Papss + chr3L_6_19850001 chr3L_19850001 RAL-380 1191 chr3L 19861835 19861851 chr3L 19863623 19863639 S-element 5 1786 1.5 4.0 2.8 1.3 1804 chr3L 19861835 5` UTR CR45433 + chr3L 19862737 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-380 1192 chr3L 19981206 19981230 chr3L 19981286 19981308 4 80 3.0 2.5 2.8 1.1 102 chr3L 19981206 intergenic CG17732 + chr3L 19981257 intergenic CG17732 + chr3L 19981308 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-380 1193 chr3L 20057561 20057588 chr3L 20057673 20057701 8 109 4.0 2.5 3.2 1.9 140 chr3L 20057561 intergenic not near genes chr3L 20057631 intergenic not near genes chr3L 20057701 intergenic not near genes chr3L_8_20055001 chr3L_20055001 RAL-380 1194 chr3L 20081749 20081768 chr3L 20081832 20081851 8 83 0.0 0.0 0.0 8.0 102 chr3L 20081749 intron sNPF-R - chr3L 20081800 intron sNPF-R - chr3L 20081851 intron sNPF-R - chr3L_8_20080001 chr3L_20080001 RAL-380 1195 chr3L 20113478 20113511 chr3L 20113573 20113605 13 95 3.0 1.0 2.0 4.3 127 chr3L 20113478 intergenic not near genes chr3L 20113542 intergenic not near genes chr3L 20113605 intergenic not near genes chr3L_13_20110001 chr3L_20110001 RAL-380 1196 chr3L 20113664 20113690 chr3L 20122921 20122947 roo 10 9257 1.0 1.5 1.2 4.5 9283 chr3L 20113664 intergenic not near genes chr3L 20118306 intergenic not near genes chr3L 20122947 intergenic not near genes chr3L_10_20115001 chr3L_20115001 RAL-380 1197 chr3L 20148285 20148317 chr3L 20148374 20148399 8 88 4.0 2.0 3.0 2.0 114 chr3L 20148285 intergenic not near genes chr3L 20148342 intergenic not near genes chr3L 20148399 intergenic not near genes chr3L_8_20145001 chr3L_20145001 RAL-380 1198 chr3L 20156181 20156193 chr3L 20156296 20156315 5 116 2.0 4.5 3.2 1.2 134 chr3L 20156181 intron CG42674 - chr3L 20156248 intron CG42674 - chr3L 20156315 intron CG42674 - chr3L_5_20155001 chr3L_20155001 RAL-380 1199 chr3L 20187460 20187484 chr3L 20187539 20187563 9 79 15.0 18.0 16.5 0.5 103 chr3L 20187460 intron CG42674 - chr3L 20187512 intron CG42674 - chr3L 20187563 intron CG42674 - chr3L_9_20185001 chr3L_20185001 RAL-380 1200 chr3L 20257332 20257360 chr3L 20258452 20258479 pogo 9 1119 1.5 5.0 3.2 2.1 1147 chr3L 20257332 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258479 intron rdgC + chr3L_9_20255001 chr3L_20255001 RAL-380 1201 chr3L 20262809 20262827 chr3L 20262906 20262939 10 106 5.0 3.5 4.2 1.9 130 chr3L 20262809 exon rdgC + chr3L 20262874 intron rdgC + chr3L 20262939 intron rdgC + chr3L_10_20260001 chr3L_20260001 RAL-380 1202 chr3L 20402198 20402223 chr3L 20402279 20402303 7 80 2.0 0.5 1.2 3.2 105 chr3L 20402198 intergenic not near genes chr3L 20402250 intergenic not near genes chr3L 20402303 intergenic not near genes chr3L_7_20400001 chr3L_20400001 RAL-380 1203 chr3L 20403576 20403609 chr3L 20403671 20403703 6 95 1.0 4.5 2.8 1.6 127 chr3L 20403576 intergenic not near genes chr3L 20403640 intergenic not near genes chr3L 20403703 intergenic not near genes chr3L_6_20400001 chr3L_20400001 RAL-380 1204 chr3L 20710756 20710785 chr3L 20710833 20710862 12 77 3.0 3.5 3.2 2.9 106 chr3L 20710756 intergenic not near genes chr3L 20710809 intergenic not near genes chr3L 20710862 intergenic not near genes chr3L_12_20710001 chr3L_20710001 RAL-380 1205 chr3L 20781384 20781412 chr3L 20781470 20781498 7 85 2.5 3.0 2.8 1.8 114 chr3L 20781384 3` UTR CG11399 - chr3L 20781441 3` UTR CG11399 - chr3L 20781498 3` UTR CG11399 - chr3L_7_20780001 chr3L_20780001 RAL-380 1206 chr3L 20849271 20849299 chr3L 20849350 20849378 11 79 2.0 2.5 2.2 3.4 107 chr3L 20849271 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849378 intron CG32432 - chr3L_11_20845001 chr3L_20845001 RAL-380 1207 chr3L 20913748 20913782 chr3L 20913830 20913864 11 78 1.5 2.0 1.8 3.9 116 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_11_20910001 chr3L_20910001 RAL-380 1208 chr3L 20917093 20917119 chr3L 20917170 20917196 11 76 4.0 4.5 4.2 2.1 103 chr3L 20917093 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917196 intergenic not near genes chr3L_11_20915001 chr3L_20915001 RAL-380 1209 chr3L 20931806 20931836 chr3L 20931889 20931919 7 83 1.0 0.0 0.5 4.7 113 chr3L 20931806 intron fng - chr3L 20931862 intron fng - chr3L 20931919 intron fng - chr3L_7_20930001 chr3L_20930001 RAL-380 1210 chr3L 20948675 20948698 chr3L 20948764 20948787 10 88 4.5 4.0 4.2 1.9 112 chr3L 20948675 intron fng - chr3L 20948731 intron fng - chr3L 20948787 intron fng - chr3L_10_20945001 chr3L_20945001 RAL-380 1211 chr3L 20979155 20979179 chr3L 20979537 20979561 9 382 1.0 1.5 1.2 4.1 406 chr3L 20979155 intergenic not near genes chr3L 20979358 intergenic not near genes chr3L 20979561 intergenic not near genes chr3L_9_20975001 chr3L_20975001 RAL-380 1212 chr3L 20986762 20986790 chr3L 20986840 20986860 9 77 3.0 4.5 3.8 1.9 98 chr3L 20986762 intergenic not near genes chr3L 20986811 intergenic not near genes chr3L 20986860 intergenic not near genes chr3L_9_20985001 chr3L_20985001 RAL-380 1213 chr3L 21014917 21014948 chr3L 21023398 21023429 Tirant 11 8477 3.5 4.5 4.0 2.2 8512 chr3L 21014917 intron skd - chr3L 21019173 intron skd - chr3L 21023429 intron skd - chr3L_11_21015001 chr3L_21015001 RAL-380 1214 chr3L 21110179 21110203 chr3L 21110433 21110457 9 254 3.5 0.5 2.0 3.0 278 chr3L 21110179 intron ko - chr3L 21110318 intron ko - chr3L 21110457 intron ko - chr3L_9_21110001 chr3L_21110001 RAL-380 1215 chr3L 21151865 21151884 chr3L 21156949 21156967 flea 6 5083 4.5 3.0 3.8 1.2 5102 chr3L 21151865 intron Ac78C - chr3L 21154416 intron Ac78C - chr3L 21156967 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-380 1216 chr3L 21158595 21158624 chr3L 21158671 21158689 8 74 3.5 1.0 2.2 2.5 94 chr3L 21158595 intron Ac78C - chr3L 21158642 intron Ac78C - chr3L 21158689 intron Ac78C - chr3L_8_21155001 chr3L_21155001 RAL-380 1217 chr3L 21172838 21172870 chr3L 21172938 21172973 9 102 0.5 1.5 1.0 4.5 135 chr3L 21172838 intergenic chb +,asparagine-synthetase + chr3L 21172906 5` UTR chb + chr3L 21172973 5` UTR chb + chr3L_9_21170001 chr3L_21170001 RAL-380 1218 chr3L 21186061 21186087 chr3L 21186132 21186163 6 72 4.0 6.5 5.2 1.0 102 chr3L 21186061 intron CG42337 - chr3L 21186112 intron CG42337 - chr3L 21186163 intron CG42337 - chr3L_6_21185001 chr3L_21185001 RAL-380 1219 chr3L 21256529 21256566 chr3L 21256623 21256660 7 83 1.0 4.0 2.5 2.0 131 chr3L 21256529 intron Eip78C + chr3L 21256594 intron Eip78C + chr3L 21256660 intron Eip78C + chr3L_7_21255001 chr3L_21255001 RAL-380 1220 chr3L 21303707 21303734 chr3L 21303794 21303821 6 87 3.0 2.5 2.8 1.6 114 chr3L 21303707 intron CG11309 - chr3L 21303764 intron CG11309 - chr3L 21303821 intron CG11309 - chr3L_6_21300001 chr3L_21300001 RAL-380 1221 chr3L 21361726 21361752 chr3L 21362679 21362706 G2 8 953 1.5 2.0 1.8 2.9 980 chr3L 21361726 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362706 intergenic not near genes chr3L_8_21360001 chr3L_21360001 RAL-380 1222 chr3L 21406997 21407028 chr3L 21407076 21407093 4 73 2.0 6.0 4.0 0.8 96 chr3L 21406997 intron rgn + chr3L 21407045 intron rgn + chr3L 21407093 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-380 1223 chr3L 21437600 21437629 chr3L 21437707 21437736 6 107 1.5 3.0 2.2 1.9 136 chr3L 21437600 3` UTR Aef1 + chr3L 21437668 3` UTR Aef1 + chr3L 21437736 3` UTR Aef1 + chr3L_6_21435001 chr3L_21435001 RAL-380 1224 chr3L 4341331 4341334 chr3L 21448026 21448026 4 17106693 18.5 11.0 14.8 0.3 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-380 1225 chr3L 21509659 21509679 chr3L 21509736 21509756 8 77 2.0 4.0 3.0 2.0 97 chr3L 21509659 intron M6 + chr3L 21509708 intron M6 + chr3L 21509756 intron M6 + chr3L_8_21505001 chr3L_21505001 RAL-380 1226 chr3L 21637327 21637351 chr3L 21637414 21637438 9 87 3.5 3.5 3.5 2.0 111 chr3L 21637327 intron CG32444 + chr3L 21637382 intron CG32444 + chr3L 21637438 intron CG32444 + chr3L_9_21635001 chr3L_21635001 RAL-380 1227 chr3L 21649776 21649790 chr3L 21650000 21650013 8 223 4.0 2.5 3.2 1.9 237 chr3L 21649776 intron CG43980 + chr3L 21649894 intron CG43980 + chr3L 21650013 intron CG43980 + chr3L_8_21645001 chr3L_21645001 RAL-380 1228 chr3L 21671055 21671089 chr3L 21671203 21671237 7 148 2.0 2.5 2.2 2.2 182 chr3L 21671055 intergenic not near genes chr3L 21671146 intergenic not near genes chr3L 21671237 intergenic not near genes chr3L_7_21670001 chr3L_21670001 RAL-380 1229 chr3L 21736345 21736372 chr3L 21736546 21736573 6 200 0.5 5.0 2.8 1.6 228 chr3L 21736345 intergenic CR43888 + chr3L 21736459 intergenic CR43888 + chr3L 21736573 intergenic CR43888 + chr3L_6_21735001 chr3L_21735001 RAL-380 1230 chr3L 21749315 21749344 chr3L 21754475 21754499 Doc 7 5158 5.0 4.0 4.5 1.3 5184 chr3L 21749315 intron Syn1 - chr3L 21751907 intron Syn1 - chr3L 21754499 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-380 1231 chr3L 21769061 21769077 chr3L 21769148 21769164 7 86 2.5 4.0 3.2 1.7 103 chr3L 21769061 intron,intron Syn1 -,CG42689 + chr3L 21769112 intron,intron Syn1 -,CG42689 + chr3L 21769164 intron,intron Syn1 -,CG42689 + chr3L_7_21765001 chr3L_21765001 RAL-380 1232 chr3L 21776675 21776840 chr3L 21776762 21776944 4 91 4.0 2.0 3.0 1.0 269 chr3L 21776675 intron,intron CG42689 +,CG42552 + chr3L 21776810 intron,intron CG42689 +,CG42552 + chr3L 21776944 exon,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-380 1233 chr3L 21836726 21836759 chr3L 21836812 21836841 8 85 1.5 3.0 2.2 2.5 115 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836784 3` UTR P5CDh1 - chr3L 21836841 3` UTR P5CDh1 - chr3L_8_21835001 chr3L_21835001 RAL-380 1234 chr3L 21849507 21849527 chr3L 21849589 21849609 9 82 5.0 2.5 3.8 1.9 102 chr3L 21849507 intron mub + chr3L 21849558 intron mub + chr3L 21849609 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-380 1235 chr3L 21905330 21905364 chr3L 21905410 21905444 9 74 4.5 5.0 4.8 1.6 114 chr3L 21905330 intron mub + chr3L 21905387 intron mub + chr3L 21905444 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-380 1236 chr3L 21905910 21905939 chr3L 21906014 21906042 5 104 1.0 4.0 2.5 1.4 132 chr3L 21905910 intron mub + chr3L 21905976 intron mub + chr3L 21906042 intron mub + chr3L_5_21905001 chr3L_21905001 RAL-380 1237 chr3L 22006901 22006928 chr3L 22006992 22007019 7 91 17.5 16.5 17.0 0.4 118 chr3L 22006901 intergenic not near genes chr3L 22006960 intergenic not near genes chr3L 22007019 intergenic not near genes chr3L_7_22005001 chr3L_22005001 RAL-380 1238 chr3L 22033702 22033723 chr3L 22033778 22033800 8 77 4.0 6.0 5.0 1.3 98 chr3L 22033702 intergenic not near genes chr3L 22033751 intergenic not near genes chr3L 22033800 intergenic not near genes chr3L_8_22030001 chr3L_22030001 RAL-380 1239 chr3L 22099680 22099708 chr3L 22105866 22105894 3S18 8 6186 3.5 1.5 2.5 2.3 6214 chr3L 22099680 intergenic not near genes chr3L 22102787 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-380 1240 chr3L 22130499 22130520 chr3L 22130645 22130664 6 146 2.0 4.5 3.2 1.4 165 chr3L 22130499 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130664 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-380 1241 chr3L 22212918 22212953 chr3L 22213068 22213104 13 150 1.5 2.0 1.8 4.6 186 chr3L 22212918 intron olf413 + chr3L 22213011 intron olf413 + chr3L 22213104 intron olf413 + chr3L_13_22210001 chr3L_22210001 RAL-380 1242 chr3L 22232578 22232610 chr3L 22232681 22232688 8 94 1.5 3.5 2.5 2.3 110 chr3L 22232578 intron olf413 + chr3L 22232633 intron olf413 + chr3L 22232688 intron olf413 + chr3L_8_22230001 chr3L_22230001 RAL-380 1243 chr3L 22255900 22255927 chr3L 22255979 22256007 11 76 6.0 7.0 6.5 1.5 107 chr3L 22255900 intergenic not near genes chr3L 22255954 intergenic not near genes chr3L 22256007 intergenic not near genes chr3L_11_22255001 chr3L_22255001 RAL-380 1244 chr3L 22309070 22309103 chr3L 22309155 22309188 15 84 4.5 5.0 4.8 2.6 118 chr3L 22309070 intron Ten-m - chr3L 22309129 intron Ten-m - chr3L 22309188 intron Ten-m - chr3L_15_22305001 chr3L_22305001 RAL-380 1245 chr3L 22358380 22358412 chr3L 22358466 22358498 17 85 3.0 4.5 3.8 3.5 118 chr3L 22358380 intron Ten-m - chr3L 22358439 intron Ten-m - chr3L 22358498 intron Ten-m - chr3L_17_22355001 chr3L_22355001 RAL-380 1246 chr3L 22366713 22366741 chr3L 22366791 22366818 14 78 2.0 1.0 1.5 5.6 105 chr3L 22366713 intron Ten-m - chr3L 22366766 intron Ten-m - chr3L 22366818 intron Ten-m - chr3L_14_22365001 chr3L_22365001 RAL-380 1247 chr3L 22413873 22413902 chr3L 22413957 22413986 10 81 1.0 4.0 2.5 2.9 113 chr3L 22413873 intergenic not near genes chr3L 22413930 intergenic not near genes chr3L 22413986 intergenic not near genes chr3L_10_22410001 chr3L_22410001 RAL-380 1248 chr3L 22577634 22577641 chr3L 22582405 22582429 Doc 4 4784 3.0 6.5 4.8 0.7 4795 chr3L 22577634 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582429 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-380 1249 chr3L 22617195 22617222 chr3L 22624642 22624673 blood 8 7451 1.5 1.5 1.5 3.2 7478 chr3L 22617195 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-380 1250 chr3L 22759681 22759707 chr3L 22759776 22759779 4 83 3.0 0.0 1.5 1.6 98 chr3L 22759681 intron SPoCk + chr3L 22759730 intron SPoCk + chr3L 22759779 intron SPoCk + chr3L_4_22755001 chr3L_22755001 RAL-380 1251 chr3L 22761407 22761424 chr3L 22766841 22766858 Ivk 8 5434 2.0 5.0 3.5 1.8 5451 chr3L 22761407 intron SPoCk + chr3L 22764132 intron SPoCk + chr3L 22766858 intron SPoCk + chr3L_8_22760001 chr3L_22760001 RAL-380 1252 chr3L 22865987 22866011 chr3L 22867119 22867144 Doc 8 1133 2.5 2.0 2.2 2.5 1157 chr3L 22865987 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-380 1253 chr3L 22897203 22897224 chr3L 22897285 22897307 9 81 3.0 2.5 2.8 2.4 104 chr3L 22897203 intergenic not near genes chr3L 22897255 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_9_22895001 chr3L_22895001 RAL-380 1254 chr3L 19220633 19220637 chr3L 22908066 22908066 13 3687432 21.5 22.5 22.0 0.6 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_13_21060001 chr3L_21060001 RAL-380 1255 chr3L 19220633 19220638 chr3L 22908067 22908067 20 3687432 21.5 22.5 22.0 0.9 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_20_21060001 chr3L_21060001 RAL-380 1256 chr3L 22949204 22949212 chr3L 22949292 22949300 4 88 5.5 9.0 7.2 0.5 96 chr3L 22949204 intron Mes2 + chr3L 22949252 intron Mes2 + chr3L 22949300 intron Mes2 + chr3L_4_22945001 chr3L_22945001 RAL-380 1257 chr3L 22964606 22964640 chr3L 22964697 22964731 10 87 3.5 1.5 2.5 2.9 125 chr3L 22964606 intergenic not near genes chr3L 22964668 intergenic not near genes chr3L 22964731 intergenic not near genes chr3L_10_22960001 chr3L_22960001 RAL-380 1258 chr3L 22985301 22985329 chr3L 22985384 22985412 6 83 2.5 1.0 1.8 2.1 111 chr3L 22985301 intergenic not near genes chr3L 22985356 intergenic not near genes chr3L 22985412 intergenic not near genes chr3L_6_22985001 chr3L_22985001 RAL-380 1259 chr3L 22989870 22989894 chr3L 22996835 22996868 297 4 6969 4.5 2.0 3.2 1.0 6998 chr3L 22989870 intergenic not near genes chr3L 22993369 intergenic not near genes chr3L 22996868 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-380 1260 chr3L 23721339 23721362 chr3L 23721415 23721436 5 73 4.0 6.5 5.2 0.8 97 chr3L 23721339 intergenic not near genes chr3L 23721388 intergenic not near genes chr3L 23721436 intergenic not near genes chr3L_5_23720001 chr3L_23720001 RAL-380 1261 chr3L 23750944 23750952 chr3L 23751145 23751153 5 203 25.0 18.0 21.5 0.2 209 chr3L 23750944 intergenic not near genes chr3L 23751048 intergenic not near genes chr3L 23751153 intergenic not near genes chr3L_5_23750001 chr3L_23750001 RAL-380 1262 chr3L 23750928 23750955 chr3L 23751156 23751164 4 210 23.5 17.0 20.2 0.2 236 chr3L 23750928 intergenic not near genes chr3L 23751046 intergenic not near genes chr3L 23751164 intergenic not near genes chr3L_4_23750001 chr3L_23750001 RAL-380 1263 chr3L 24012413 24012438 chr3L 24020747 24020779 roo 6 8340 1.0 2.0 1.5 2.4 8366 chr3L 24012413 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020779 intergenic not near genes chr3L_6_24015001 chr3L_24015001 RAL-380 1264 chr3L 24168796 24168818 chr3L 24176119 24176124 ZAM 4 7321 4.5 7.0 5.8 0.6 7328 chr3L 24168796 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176124 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-380 1265 chr3L 24791903 24791920 chr3L 24796682 24796699 Doc 4 4776 2.5 3.0 2.8 1.1 4796 chr3L 24791903 intergenic not near genes chr3L 24794301 intergenic not near genes chr3L 24796699 intergenic not near genes chr3L_4_24790001 chr3L_24790001 RAL-380 1266 chr3L 18198930 18198931 chr3L 24821493 24821494 8 6622562 0.0 12.0 6.0 1.1 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_8_21510001 chr3L_21510001 RAL-380 1267 chr3L 25331636 25331644 chr3L 25331726 25331735 5 91 6.0 3.0 4.5 0.9 99 chr3L 25331636 intergenic not near genes chr3L 25331686 intergenic not near genes chr3L 25331735 intergenic not near genes chr3L_5_25330001 chr3L_25330001 RAL-380 1268 chr3L 26010823 26010857 chr3L 26010907 26010941 9 84 2.5 2.0 2.2 2.8 118 chr3L 26010823 intron CG40178 - chr3L 26010882 intron CG40178 - chr3L 26010941 intron CG40178 - chr3L_9_26010001 chr3L_26010001 RAL-380 1269 chr3R 1521170 1521184 chr3R 1521251 1521265 5 85 5.5 12.5 9.0 0.5 95 chr3R 1521170 intergenic not near genes chr3R 1521218 intergenic not near genes chr3R 1521265 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-380 1270 chr3R 2534135 2534165 chr3R 2541704 2541734 8 7563 18.0 17.0 17.5 0.4 7599 chr3R 2534135 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541734 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-380 1271 chr3R 2556878 2556911 chr3R 2557611 2557644 12 734 23.5 15.0 19.2 0.6 766 chr3R 2556878 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557644 intron CG41056 - chr3R_12_2555001 chr3R_2555001 RAL-380 1272 chr3R 4063809 4063834 chr3R 4069089 4069097 8 5277 5.5 14.5 10.0 0.7 5288 chr3R 4063809 intergenic not near genes chr3R 4066453 intergenic not near genes chr3R 4069097 intergenic not near genes chr3R_8_4065001 chr3R_4065001 RAL-380 1273 chr3R 4132902 4132927 chr3R 4133056 4133081 6 153 1.0 0.5 0.8 3.3 179 chr3R 4132902 5` UTR Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133081 intron Gfat1 + chr3R_6_4130001 chr3R_4130001 RAL-380 1274 chr3R 4206074 4206094 chr3R 4211649 4211669 mdg3 6 5574 5.0 1.5 3.2 1.4 5595 chr3R 4206074 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211669 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-380 1275 chr3R 4366755 4366787 chr3R 4375138 4375170 roo 9 8383 1.0 1.5 1.2 4.1 8415 chr3R 4366755 3` UTR CG1090 + chr3R 4370962 intergenic not near genes chr3R 4375170 5` UTR CR44922 + chr3R_9_4370001 chr3R_4370001 RAL-380 1276 chr3R 4408411 4408436 chr3R 4412715 4412740 Juan 8 4303 4.0 5.0 4.5 1.5 4329 chr3R 4408411 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412740 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-380 1277 chr3R 4609546 4609582 chr3R 4610710 4610746 1360 15 1164 6.0 3.5 4.8 2.6 1200 chr3R 4609546 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610746 intergenic not near genes chr3R_15_4610001 chr3R_4610001 RAL-380 1278 chr3R 4722341 4722364 chr3R 4722478 4722501 10 137 4.0 3.5 3.8 2.1 160 chr3R 4722341 intron Nep2 - chr3R 4722421 intron Nep2 - chr3R 4722501 intron Nep2 - chr3R_10_4720001 chr3R_4720001 RAL-380 1279 chr3R 4739117 4739143 chr3R 4739193 4739218 12 76 4.5 4.5 4.5 2.2 101 chr3R 4739117 intron tacc - chr3R 4739168 intron tacc - chr3R 4739218 intron tacc - chr3R_12_4735001 chr3R_4735001 RAL-380 1280 chr3R 4769166 4769187 chr3R 4769244 4769265 11 76 6.5 3.0 4.8 1.9 99 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-380 1281 chr3R 4816043 4816076 chr3R 4816129 4816162 4 86 1.0 1.0 1.0 2.0 119 chr3R 4816043 intergenic CG1129 +,CG1126 + chr3R 4816102 intergenic CG1126 +,CG1129 + chr3R 4816162 intergenic CG1126 +,CG1129 + chr3R_4_4815001 chr3R_4815001 RAL-380 1282 chr3R 4887479 4887502 chr3R 4894855 4894876 rover 9 7374 4.0 2.5 3.2 2.1 7397 chr3R 4887479 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894876 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-380 1283 chr3R 4904877 4904888 chr3R 18214678 18214693 5 13309805 11.5 6.5 9.0 0.5 13309816 chr3R 4904877 intergenic not near genes chr3R 11559785 3` UTR CG10898 + chr3R 18214693 3` UTR CG7985 + chr3R_5_11555001 chr3R_11555001 RAL-380 1284 chr3R 5045844 5045867 chr3R 5052945 5052969 HMS-Beagle 6 7102 7.5 1.0 4.2 1.2 7125 chr3R 5045844 intron CR43635 - chr3R 5049406 intergenic not near genes chr3R 5052969 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-380 1285 chr3R 5067980 5068012 chr3R 5073497 5073529 mdg3 7 5517 1.5 4.5 3.0 1.8 5549 chr3R 5067980 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-380 1286 chr3R 5089198 5089226 chr3R 5089294 5089322 9 91 5.5 2.5 4.0 1.8 124 chr3R 5089198 intergenic not near genes chr3R 5089260 intergenic not near genes chr3R 5089322 intergenic not near genes chr3R_9_5085001 chr3R_5085001 RAL-380 1287 chr3R 5278090 5278117 chr3R 5278171 5278198 6 81 3.5 1.5 2.5 1.7 108 chr3R 5278090 intron mtd - chr3R 5278144 intron mtd - chr3R 5278198 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-380 1288 chr3R 5306150 5306159 chr3R 5306235 5306245 4 84 3.5 5.0 4.2 0.8 95 chr3R 5306150 intron mtd - chr3R 5306198 intron mtd - chr3R 5306245 intron mtd - chr3R_4_5305001 chr3R_5305001 RAL-380 1289 chr3R 5338396 5338405 chr3R 5343573 5343581 Rt1c 8 5177 13.0 6.0 9.5 0.8 5185 chr3R 5338396 intron mtd - chr3R 5340988 intron mtd - chr3R 5343581 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-380 1290 chr3R 5338406 5338427 chr3R 5343569 5343604 Rt1c 11 5175 8.0 4.0 6.0 1.6 5198 chr3R 5338406 intron mtd - chr3R 5341005 intron mtd - chr3R 5343604 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-380 1291 chr3R 5385973 5386005 chr3R 5386144 5386176 6 171 2.0 4.0 3.0 1.5 203 chr3R 5385973 intron kkv - chr3R 5386074 intron kkv - chr3R 5386176 intron kkv - chr3R_6_5385001 chr3R_5385001 RAL-380 1292 chr3R 5445970 5445992 chr3R 5452429 5452452 Burdock 10 6460 2.5 2.5 2.5 2.9 6482 chr3R 5445970 intron CG14669 + chr3R 5449211 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_10_5445001 chr3R_5445001 RAL-380 1293 chr3R 5627162 5627180 chr3R 5627558 5627588 9 405 1.5 3.0 2.2 2.8 426 chr3R 5627162 intergenic not near genes chr3R 5627375 intergenic CG31551 + chr3R 5627588 intergenic CG31551 + chr3R_9_5625001 chr3R_5625001 RAL-380 1294 chr3R 5726096 5726125 chr3R 5726258 5726287 9 162 0.5 2.5 1.5 3.6 191 chr3R 5726096 intergenic not near genes chr3R 5726192 intergenic not near genes chr3R 5726287 intergenic not near genes chr3R_9_5725001 chr3R_5725001 RAL-380 1295 chr3R 5746021 5746046 chr3R 5746261 5746287 pogo 10 240 3.0 4.5 3.8 2.1 266 chr3R 5746021 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_10_5745001 chr3R_5745001 RAL-380 1296 chr3R 5747020 5747048 chr3R 5753211 5753239 diver 12 6191 1.5 3.5 2.5 3.4 6219 chr3R 5747020 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753239 intergenic CG2091 - chr3R_12_5750001 chr3R_5750001 RAL-380 1297 chr3R 5772376 5772406 chr3R 5772533 5772564 6 158 4.0 1.0 2.5 1.7 188 chr3R 5772376 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772564 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-380 1298 chr3R 5809112 5809145 chr3R 5809353 5809385 pogo 13 241 4.0 1.5 2.8 3.4 273 chr3R 5809112 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_13_5805001 chr3R_5805001 RAL-380 1299 chr3R 5822376 5822408 chr3R 5823543 5823575 1360 7 1167 2.5 3.5 3.0 1.8 1199 chr3R 5822376 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-380 1300 chr3R 5927566 5927590 chr3R 5927806 5927830 pogo 7 237 3.5 2.0 2.8 1.8 264 chr3R 5927566 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-380 1301 chr3R 5989334 5989365 chr3R 5989417 5989448 8 80 5.0 0.5 2.8 2.1 114 chr3R 5989334 5` UTR CR44927 + chr3R 5989391 5` UTR CR44927 + chr3R 5989448 5` UTR CR44927 + chr3R_8_5985001 chr3R_5985001 RAL-380 1302 chr3R 6015970 6015983 chr3R 6024451 6024464 Tirant 5 8480 4.5 5.0 4.8 0.9 8494 chr3R 6015970 intergenic not near genes chr3R 6020217 intergenic not near genes chr3R 6024464 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-380 1303 chr3R 6131034 6131059 chr3R 6131110 6131140 4 78 2.5 0.5 1.5 1.6 106 chr3R 6131034 intergenic not near genes chr3R 6131087 intergenic not near genes chr3R 6131140 intergenic not near genes chr3R_4_6130001 chr3R_6130001 RAL-380 1304 chr3R 6158514 6158540 chr3R 6167096 6167108 Tirant 6 8579 5.5 2.5 4.0 1.2 8594 chr3R 6158514 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167108 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-380 1305 chr3R 6171151 6171175 chr3R 6171513 6171534 5 361 0.5 2.0 1.2 2.3 383 chr3R 6171151 intergenic not near genes chr3R 6171342 intergenic not near genes chr3R 6171534 intergenic not near genes chr3R_5_6170001 chr3R_6170001 RAL-380 1306 chr3R 6175178 6175195 chr3R 6182450 6182466 HMS-Beagle2 9 7271 3.0 3.0 3.0 2.2 7288 chr3R 6175178 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182466 intergenic CR45194 + chr3R_9_6175001 chr3R_6175001 RAL-380 1307 chr3R 6428809 6428824 chr3R 6428911 6428926 5 102 5.0 1.0 3.0 1.2 117 chr3R 6428809 intron gpp + chr3R 6428868 intron gpp + chr3R 6428926 intron gpp + chr3R_5_6425001 chr3R_6425001 RAL-380 1308 chr3R 6461603 6461612 chr3R 6461683 6461690 5 79 0.5 4.0 2.2 1.6 87 chr3R 6461603 intergenic not near genes chr3R 6461646 intergenic not near genes chr3R 6461690 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-380 1309 chr3R 6510023 6510056 chr3R 6515104 6515135 jockey 8 5080 1.0 2.0 1.5 3.2 5112 chr3R 6510023 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_8_6510001 chr3R_6510001 RAL-380 1310 chr3R 6687312 6687379 chr3R 6687383 6687459 7 75 1.5 1.5 1.5 2.8 147 chr3R 6687312 exon Ccp84Ag + chr3R 6687386 exon Ccp84Ag + chr3R 6687459 exon Ccp84Ag + chr3R_7_6685001 chr3R_6685001 RAL-380 1311 chr3R 6689339 6689360 chr3R 6689420 6689424 6 78 1.0 2.5 1.8 2.1 85 chr3R 6689339 intergenic Ccp84Af - chr3R 6689382 intergenic Ccp84Af - chr3R 6689424 intergenic Ccp84Af - chr3R_6_6685001 chr3R_6685001 RAL-380 1312 chr3R 6705689 6705719 chr3R 6705912 6705943 6 224 0.5 2.0 1.2 2.7 254 chr3R 6705689 intergenic not near genes chr3R 6705816 intergenic not near genes chr3R 6705943 intergenic not near genes chr3R_6_6705001 chr3R_6705001 RAL-380 1313 chr3R 6737498 6737517 chr3R 6739285 6739304 Doc 8 1786 3.0 3.5 3.2 1.9 1806 chr3R 6737498 intron pb - chr3R 6738401 intron pb - chr3R 6739304 intron pb - chr3R_8_6735001 chr3R_6735001 RAL-380 1314 chr3R 6737522 6737529 chr3R 6739284 6739316 Doc 4 1778 2.0 3.5 2.8 1.1 1794 chr3R 6737522 intron pb - chr3R 6738419 intron pb - chr3R 6739316 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-380 1315 chr3R 6856383 6856400 chr3R 6856500 6856517 6 117 2.5 1.5 2.0 2.0 134 chr3R 6856383 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856517 intergenic not near genes chr3R_6_6855001 chr3R_6855001 RAL-380 1316 chr3R 6862225 6862252 chr3R 6862308 6862339 7 86 2.5 1.0 1.8 2.5 114 chr3R 6862225 intergenic not near genes chr3R 6862282 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-380 1317 chr3R 6866368 6866399 chr3R 6866677 6866708 8 309 3.5 4.0 3.8 1.7 340 chr3R 6866368 intergenic ftz + chr3R 6866538 intergenic ftz + chr3R 6866708 intergenic ftz + chr3R_8_6865001 chr3R_6865001 RAL-380 1318 chr3R 6940967 6941001 chr3R 6941151 6941184 7 183 1.0 5.0 3.0 1.8 217 chr3R 6940967 intron Antp - chr3R 6941076 intron Antp - chr3R 6941184 intron Antp - chr3R_7_6940001 chr3R_6940001 RAL-380 1319 chr3R 6958926 6958952 chr3R 6959136 6959163 12 210 3.5 2.5 3.0 3.0 237 chr3R 6958926 intron Antp - chr3R 6959044 intron Antp - chr3R 6959163 intron Antp - chr3R_12_6955001 chr3R_6955001 RAL-380 1320 chr3R 6978887 6978913 chr3R 6978970 6978998 8 85 3.5 1.0 2.2 2.5 111 chr3R 6978887 intron Antp - chr3R 6978942 intron Antp - chr3R 6978998 intron Antp - chr3R_8_6975001 chr3R_6975001 RAL-380 1321 chr3R 7103299 7103315 chr3R 7103361 7103391 8 70 3.0 2.5 2.8 2.1 92 chr3R 7103299 intron Alh - chr3R 7103345 intron Alh - chr3R 7103391 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-380 1322 chr3R 7210605 7210617 chr3R 7210690 7210701 4 82 0.5 5.5 3.0 1.0 96 chr3R 7210605 intergenic not near genes chr3R 7210653 intergenic not near genes chr3R 7210701 intergenic not near genes chr3R_4_7210001 chr3R_7210001 RAL-380 1323 chr3R 7281068 7281079 chr3R 7281142 7281171 8 87 1.0 5.0 3.0 2.0 103 chr3R 7281068 intron rn - chr3R 7281120 intron rn - chr3R 7281171 intron rn - chr3R_8_7280001 chr3R_7280001 RAL-380 1324 chr3R 7481832 7481866 chr3R 7481910 7481924 5 74 1.5 2.0 1.8 1.8 92 chr3R 7481832 intergenic not near genes chr3R 7481878 intergenic not near genes chr3R 7481924 intergenic not near genes chr3R_5_7480001 chr3R_7480001 RAL-380 1325 chr3R 7503766 7503796 chr3R 7503881 7503890 8 112 5.5 3.5 4.5 1.5 124 chr3R 7503766 intron alpha-Est9 - chr3R 7503828 intron alpha-Est9 - chr3R 7503890 intron alpha-Est9 - chr3R_8_7500001 chr3R_7500001 RAL-380 1326 chr3R 7621554 7621563 chr3R 7621641 7621653 4 89 1.5 3.0 2.2 1.2 99 chr3R 7621554 intron CG34127 - chr3R 7621604 intron CG34127 - chr3R 7621653 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-380 1327 chr3R 7635653 7635683 chr3R 7635736 7635766 8 83 1.0 0.5 0.8 4.4 113 chr3R 7635653 intron CG34127 - chr3R 7635710 intron CG34127 - chr3R 7635766 intron CG34127 - chr3R_8_7635001 chr3R_7635001 RAL-380 1328 chr3R 7677917 7677943 chr3R 7678028 7678056 11 111 2.0 1.5 1.8 3.9 139 chr3R 7677917 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678056 intron Nlg1 + chr3R_11_7675001 chr3R_7675001 RAL-380 1329 chr3R 7694582 7694609 chr3R 7713643 7713670 invader3 7 19059 2.5 3.0 2.8 1.8 19088 chr3R 7694582 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713670 intergenic not near genes chr3R_7_7700001 chr3R_7700001 RAL-380 1330 chr3R 7724443 7724471 chr3R 7724530 7724561 10 87 3.5 3.5 3.5 2.2 118 chr3R 7724443 3` UTR CG2616 + chr3R 7724502 3` UTR CG2616 + chr3R 7724561 3` UTR CG2616 + chr3R_10_7720001 chr3R_7720001 RAL-380 1331 chr3R 7729464 7729494 chr3R 7737402 7737427 Stalker2 7 7937 2.0 2.5 2.2 2.2 7963 chr3R 7729464 intergenic not near genes chr3R 7733446 intergenic not near genes chr3R 7737427 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-380 1332 chr3R 7738584 7738605 chr3R 7738730 7738751 6 146 4.0 1.5 2.8 1.6 167 chr3R 7738584 intergenic CG43254 - chr3R 7738668 intergenic CG43254 - chr3R 7738751 intergenic CG43254 - chr3R_6_7735001 chr3R_7735001 RAL-380 1333 chr3R 7760257 7760285 chr3R 7760765 7760794 8 508 2.5 7.0 4.8 1.4 537 chr3R 7760257 intron Sp7 + chr3R 7760526 intron Sp7 + chr3R 7760794 5` UTR Sp7 + chr3R_8_7760001 chr3R_7760001 RAL-380 1334 chr3R 7775913 7775951 chr3R 7775994 7776030 7 79 1.0 2.5 1.8 2.5 117 chr3R 7775913 intergenic not near genes chr3R 7775972 intergenic not near genes chr3R 7776030 intergenic not near genes chr3R_7_7775001 chr3R_7775001 RAL-380 1335 chr3R 7849648 7849678 chr3R 7850815 7850820 1360 7 1163 1.0 4.5 2.8 1.8 1172 chr3R 7849648 intron CG34384 + chr3R 7850234 intron CG34384 + chr3R 7850820 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-380 1336 chr3R 7883130 7883157 chr3R 7883208 7883235 7 78 3.5 2.0 2.8 1.8 105 chr3R 7883130 intron CG17816 - chr3R 7883182 intron CG17816 - chr3R 7883235 intron CG17816 - chr3R_7_7880001 chr3R_7880001 RAL-380 1337 chr3R 8094411 8094435 chr3R 8099716 8099739 Transpac 9 5305 4.0 5.5 4.8 1.6 5328 chr3R 8094411 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099739 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-380 1338 chr3R 8101768 8101793 chr3R 8104852 8104869 G2 4 3082 5.0 6.0 5.5 0.6 3101 chr3R 8101768 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104869 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-380 1339 chr3R 8213013 8213031 chr3R 8213096 8213114 6 79 5.5 2.5 4.0 1.2 101 chr3R 8213013 intergenic not near genes chr3R 8213064 intergenic not near genes chr3R 8213114 intergenic not near genes chr3R_6_8210001 chr3R_8210001 RAL-380 1340 chr3R 8255520 8255536 chr3R 8255595 8255623 5 85 5.0 3.5 4.2 1.0 103 chr3R 8255520 intron mtg + chr3R 8255572 intron mtg + chr3R 8255623 intron mtg + chr3R_5_8255001 chr3R_8255001 RAL-380 1341 chr3R 8339243 8339249 chr3R 21907534 21907535 13 13568289 17.0 25.5 21.2 0.6 13568292 chr3R 8339243 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-380 1342 chr3R 8393576 8393602 chr3R 8393656 8393676 4 75 1.5 3.5 2.5 1.1 100 chr3R 8393576 intron CG45263 - chr3R 8393626 intron CG45263 - chr3R 8393676 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-380 1343 chr3R 8403005 8403040 chr3R 8412171 8412206 roo 14 9160 6.0 4.0 5.0 2.3 9201 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_14_8405001 chr3R_8405001 RAL-380 1344 chr3R 8570478 8570502 chr3R 8575113 8575138 HMS-Beagle 10 4635 4.5 4.5 4.5 1.8 4660 chr3R 8570478 intergenic not near genes chr3R 8572808 intergenic not near genes chr3R 8575138 intergenic not near genes chr3R_10_8570001 chr3R_8570001 RAL-380 1345 chr3R 8671408 8671437 chr3R 8671490 8671521 12 83 3.5 2.0 2.8 3.2 113 chr3R 8671408 intron CG8036 + chr3R 8671464 intron CG8036 + chr3R 8671521 intron CG8036 + chr3R_12_8670001 chr3R_8670001 RAL-380 1346 chr3R 8707354 8707383 chr3R 8709795 8709806 jockey 16 2437 2.0 2.5 2.2 5.0 2452 chr3R 8707354 intergenic not near genes chr3R 8708580 intergenic not near genes chr3R 8709806 intergenic not near genes chr3R_16_8705001 chr3R_8705001 RAL-380 1347 chr3R 8917892 8917910 chr3R 8917972 8917990 9 80 4.0 3.0 3.5 2.0 98 chr3R 8917892 intron pyd - chr3R 8917941 intron pyd - chr3R 8917990 intron pyd - chr3R_9_8915001 chr3R_8915001 RAL-380 1348 chr3R 9036737 9036740 chr3R 9036833 9036836 4 96 0.0 4.5 2.2 1.2 99 chr3R 9036737 intron neur - chr3R 9036786 intron neur - chr3R 9036836 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-380 1349 chr3R 9082057 9082070 chr3R 9082140 9082164 7 90 4.0 3.5 3.8 1.5 107 chr3R 9082057 intron pum - chr3R 9082110 intron pum - chr3R 9082164 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-380 1350 chr3R 9101840 9101870 chr3R 9101938 9101968 8 98 1.0 3.0 2.0 2.7 128 chr3R 9101840 intron pum - chr3R 9101904 intron pum - chr3R 9101968 intron pum - chr3R_8_9100001 chr3R_9100001 RAL-380 1351 chr3R 9141139 9141170 chr3R 9141223 9141254 9 84 3.0 3.0 3.0 2.2 115 chr3R 9141139 intron pum - chr3R 9141196 intron pum - chr3R 9141254 intron pum - chr3R_9_9140001 chr3R_9140001 RAL-380 1352 chr3R 9278783 9278808 chr3R 9284039 9284068 Rt1a 8 5258 5.5 6.5 6.0 1.1 5285 chr3R 9278783 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-380 1353 chr3R 9304531 9304541 chr3R 9311817 9311825 Stalker4 4 7286 11.0 2.0 6.5 0.5 7294 chr3R 9304531 intron CG8861 - chr3R 9308178 intron CG8861 - chr3R 9311825 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-380 1354 chr3R 9319574 9319608 chr3R 9320008 9320037 jockey 14 434 6.5 5.0 5.8 2.1 463 chr3R 9319574 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320037 intron CG8861 - chr3R_14_9315001 chr3R_9315001 RAL-380 1355 chr3R 9361827 9361842 chr3R 9362068 9362083 pogo 5 241 0.5 1.5 1.0 2.5 256 chr3R 9361827 3` UTR CG45050 + chr3R 9361955 3` UTR CG45050 + chr3R 9362083 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-380 1356 chr3R 9379171 9379175 chr3R 9379253 9379253 4 81 1.0 4.5 2.8 1.1 82 chr3R 9379171 intron FER - chr3R 9379212 intron FER - chr3R 9379253 intron FER - chr3R_4_9375001 chr3R_9375001 RAL-380 1357 chr3R 9390535 9390563 chr3R 9390619 9390647 5 83 3.0 2.0 2.5 1.4 112 chr3R 9390535 intron FER - chr3R 9390591 intron FER - chr3R 9390647 intron FER - chr3R_5_9390001 chr3R_9390001 RAL-380 1358 chr3R 9420916 9420943 chr3R 9420999 9421030 14 86 3.0 4.0 3.5 3.1 114 chr3R 9420916 intron ps + chr3R 9420973 intron ps + chr3R 9421030 intron ps + chr3R_14_9420001 chr3R_9420001 RAL-380 1359 chr3R 9601481 9601493 chr3R 9601599 9601611 5 117 4.0 6.0 5.0 0.8 130 chr3R 9601481 intron CG8312 + chr3R 9601546 intron CG8312 + chr3R 9601611 intron CG8312 + chr3R_5_9600001 chr3R_9600001 RAL-380 1360 chr3R 9699975 9700004 chr3R 9700064 9700078 1360 13 87 6.0 3.0 4.5 2.4 103 chr3R 9699975 intron Unc-115a - chr3R 9700026 intron Unc-115a - chr3R 9700078 intron Unc-115a - chr3R_13_9700001 chr3R_9700001 RAL-380 1361 chr3R 9829404 9829414 chr3R 9829489 9829499 5 85 5.5 0.5 3.0 1.2 95 chr3R 9829404 intron Teh1 - chr3R 9829452 intron Teh1 - chr3R 9829499 intron Teh1 - chr3R_5_9825001 chr3R_9825001 RAL-380 1362 chr3R 9836872 9836900 chr3R 9836956 9836957 10 82 5.5 4.0 4.8 1.7 85 chr3R 9836872 intron Teh1 - chr3R 9836914 intron Teh1 - chr3R 9836957 intron Teh1 - chr3R_10_9835001 chr3R_9835001 RAL-380 1363 chr3R 9877206 9877232 chr3R 9877282 9877308 6 76 1.0 5.0 3.0 1.5 102 chr3R 9877206 intron,intron Glut4EF +,CR45029 - chr3R 9877257 intron,intron Glut4EF +,CR45029 - chr3R 9877308 intron,intron Glut4EF +,CR45029 - chr3R_6_9875001 chr3R_9875001 RAL-380 1364 chr3R 9898792 9898810 chr3R 9898883 9898898 7 89 3.0 3.5 3.2 1.7 106 chr3R 9898792 intron Glut4EF + chr3R 9898845 intron Glut4EF + chr3R 9898898 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-380 1365 chr3R 10034440 10034470 chr3R 10034520 10034534 5 77 3.5 4.0 3.8 1.0 94 chr3R 10034440 intron Mical - chr3R 10034487 intron Mical - chr3R 10034534 intron Mical - chr3R_5_10030001 chr3R_10030001 RAL-380 1366 chr3R 10140429 10140462 chr3R 10140519 10140553 6 90 2.0 0.0 1.0 3.0 124 chr3R 10140429 3` UTR TAF1B - chr3R 10140491 3` UTR TAF1B - chr3R 10140553 3` UTR TAF1B - chr3R_6_10140001 chr3R_10140001 RAL-380 1367 chr3R 10275558 10275584 chr3R 10275633 10275660 8 77 0.5 1.5 1.0 4.0 102 chr3R 10275558 intron CG43143 + chr3R 10275609 intron CG43143 + chr3R 10275660 intron CG43143 + chr3R_8_10275001 chr3R_10275001 RAL-380 1368 chr3R 10306953 10306986 chr3R 10312213 10312245 13 5260 36.5 15.0 25.8 0.5 5292 chr3R 10306953 exon CG43143 + chr3R 10309599 exon CG6293 - chr3R 10312245 3` UTR Bruce - chr3R_13_10305001 chr3R_10305001 RAL-380 1369 chr3R 10417481 10417500 chr3R 10417816 10417829 6 334 5.5 3.5 4.5 1.1 348 chr3R 10417481 intergenic not near genes chr3R 10417655 intergenic not near genes chr3R 10417829 intergenic not near genes chr3R_6_10415001 chr3R_10415001 RAL-380 1370 chr3R 10531867 10531894 chr3R 10531948 10531975 8 81 2.5 0.5 1.5 3.2 108 chr3R 10531867 intron hth - chr3R 10531921 intron hth - chr3R 10531975 intron hth - chr3R_8_10530001 chr3R_10530001 RAL-380 1371 chr3R 10561800 10561814 chr3R 10561890 10561898 4 87 4.5 3.5 4.0 0.8 98 chr3R 10561800 intron hth - chr3R 10561849 intron hth - chr3R 10561898 intron hth - chr3R_4_10560001 chr3R_10560001 RAL-380 1372 chr3R 10561816 10561826 chr3R 10561889 10561916 7 86 3.0 3.0 3.0 1.8 100 chr3R 10561816 intron hth - chr3R 10561866 intron hth - chr3R 10561916 exon hth - chr3R_7_10560001 chr3R_10560001 RAL-380 1373 chr3R 10804174 10804205 chr3R 10811706 10811734 17.6 10 7532 0.5 3.5 2.0 3.3 7560 chr3R 10804174 intergenic CG14692 - chr3R 10807954 intergenic not near genes chr3R 10811734 3` UTR CG14693 - chr3R_10_10805001 chr3R_10805001 RAL-380 1374 chr3R 10984394 10984406 chr3R 10984480 10984515 6 100 3.5 1.5 2.5 1.7 121 chr3R 10984394 intron CG34114 + chr3R 10984454 intron CG34114 + chr3R 10984515 intron CG34114 + chr3R_6_10980001 chr3R_10980001 RAL-380 1375 chr3R 11126081 11126094 chr3R 11126169 11126182 4 88 3.5 2.0 2.8 1.1 101 chr3R 11126081 intergenic not near genes chr3R 11126132 intergenic Ugt86Dd - chr3R 11126182 intergenic Ugt86Dd - chr3R_4_11125001 chr3R_11125001 RAL-380 1376 chr3R 11130133 11130140 chr3R 11130222 11130228 4 89 3.0 0.5 1.8 1.4 95 chr3R 11130133 intergenic not near genes chr3R 11130180 intergenic not near genes chr3R 11130228 intergenic not near genes chr3R_4_11130001 chr3R_11130001 RAL-380 1377 chr3R 11211049 11211077 chr3R 11211138 11211166 8 88 3.0 2.0 2.5 2.3 117 chr3R 11211049 3` UTR Tctp + chr3R 11211108 3` UTR Tctp + chr3R 11211166 3` UTR Tctp + chr3R_8_11210001 chr3R_11210001 RAL-380 1378 chr3R 11295474 11295482 chr3R 11295548 11295572 4 86 2.0 0.0 1.0 2.0 98 chr3R 11295474 intron CR31386 - chr3R 11295523 intron CR31386 - chr3R 11295572 intron CR31386 - chr3R_4_11295001 chr3R_11295001 RAL-380 1379 chr3R 11379234 11379266 chr3R 11388389 11388421 roo 10 9155 3.0 2.5 2.8 2.6 9187 chr3R 11379234 intron pros + chr3R 11383828 intron pros + chr3R 11388421 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-380 1380 chr3R 11472412 11472428 chr3R 11472492 11472508 5 80 2.5 4.0 3.2 1.2 96 chr3R 11472412 intergenic not near genes chr3R 11472460 intergenic not near genes chr3R 11472508 intergenic not near genes chr3R_5_11470001 chr3R_11470001 RAL-380 1381 chr3R 11483448 11483478 chr3R 11483532 11483555 5 78 1.0 7.5 4.2 1.0 107 chr3R 11483448 intergenic not near genes chr3R 11483502 intergenic not near genes chr3R 11483555 intergenic not near genes chr3R_5_11480001 chr3R_11480001 RAL-380 1382 chr3R 11502687 11502717 chr3R 11502772 11502787 5 78 4.0 5.0 4.5 0.9 100 chr3R 11502687 intron dpr5 + chr3R 11502737 intron dpr5 + chr3R 11502787 intron dpr5 + chr3R_5_11500001 chr3R_11500001 RAL-380 1383 chr3R 11518817 11518848 chr3R 11518908 11518938 12 89 4.5 1.5 3.0 3.0 121 chr3R 11518817 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518938 intergenic not near genes chr3R_12_11515001 chr3R_11515001 RAL-380 1384 chr3R 11567786 11567816 chr3R 11567874 11567905 7 87 0.5 1.0 0.8 3.9 119 chr3R 11567786 intergenic not near genes chr3R 11567846 intergenic not near genes chr3R 11567905 intergenic not near genes chr3R_7_11565001 chr3R_11565001 RAL-380 1385 chr3R 11689732 11689752 chr3R 11689814 11689834 7 81 3.5 1.5 2.5 2.0 102 chr3R 11689732 exon CG6908 - chr3R 11689783 exon CG6908 - chr3R 11689834 exon CG6908 - chr3R_7_11685001 chr3R_11685001 RAL-380 1386 chr3R 11841077 11841087 chr3R 11846268 11846271 BS 5 5189 6.0 5.0 5.5 0.8 5194 chr3R 11841077 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846271 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-380 1387 chr3R 11841090 11841094 chr3R 11846258 11846273 BS 4 5177 3.5 3.0 3.2 1.0 5183 chr3R 11841090 intron CG6959 - chr3R 11843682 intron CG6959 - chr3R 11846273 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-380 1388 chr3R 11957856 11957881 chr3R 11958139 11958160 S-element 6 282 1.5 0.5 1.0 3.0 304 chr3R 11957856 intergenic not near genes chr3R 11958008 intergenic not near genes chr3R 11958160 intergenic not near genes chr3R_6_11955001 chr3R_11955001 RAL-380 1389 chr3R 12022884 12022912 chr3R 12025061 12025089 pogo 17 2176 1.5 3.5 2.5 4.9 2205 chr3R 12022884 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025089 intergenic not near genes chr3R_17_12020001 chr3R_12020001 RAL-380 1390 chr3R 12032529 12032557 chr3R 12032612 12032639 11 83 3.5 6.0 4.8 1.9 110 chr3R 12032529 intergenic not near genes chr3R 12032584 intergenic not near genes chr3R 12032639 intergenic not near genes chr3R_11_12030001 chr3R_12030001 RAL-380 1391 chr3R 12080890 12080897 chr3R 12080946 12080975 4 72 3.5 3.5 3.5 0.9 85 chr3R 12080890 intron CG14741 - chr3R 12080932 intron CG14741 - chr3R 12080975 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-380 1392 chr3R 12131642 12131671 chr3R 12131725 12131753 8 83 1.5 2.0 1.8 2.9 111 chr3R 12131642 intergenic not near genes chr3R 12131698 intergenic not near genes chr3R 12131753 intergenic not near genes chr3R_8_12130001 chr3R_12130001 RAL-380 1393 chr3R 12165863 12165894 chr3R 12165941 12165972 6 78 2.0 1.0 1.5 2.4 109 chr3R 12165863 intron Cpn - chr3R 12165918 intron Cpn - chr3R 12165972 intron Cpn - chr3R_6_12165001 chr3R_12165001 RAL-380 1394 chr3R 12202297 12202309 chr3R 12202406 12202417 5 109 6.5 3.5 5.0 0.8 120 chr3R 12202297 intergenic not near genes chr3R 12202357 intergenic not near genes chr3R 12202417 intergenic not near genes chr3R_5_12200001 chr3R_12200001 RAL-380 1395 chr3R 12214347 12214370 chr3R 12214430 12214458 9 89 4.5 3.5 4.0 1.8 111 chr3R 12214347 3` UTR CG4848 - chr3R 12214402 3` UTR CG4848 - chr3R 12214458 3` UTR CG4848 - chr3R_9_12210001 chr3R_12210001 RAL-380 1396 chr3R 12274668 12274701 chr3R 12274794 12274813 23 124 4.5 3.0 3.8 4.8 145 chr3R 12274668 intron svp + chr3R 12274740 intron svp + chr3R 12274813 intron svp + chr3R_23_12270001 chr3R_12270001 RAL-380 1397 chr3R 12328168 12328183 chr3R 12328279 12328294 7 111 3.0 2.0 2.5 2.0 126 chr3R 12328168 intergenic CR45584 + chr3R 12328231 intergenic CR45584 + chr3R 12328294 intergenic CR45584 + chr3R_7_12325001 chr3R_12325001 RAL-380 1398 chr3R 12585749 12585781 chr3R 12585829 12585860 6 80 2.0 2.0 2.0 2.0 111 chr3R 12585749 intron Octbeta2R - chr3R 12585804 intron Octbeta2R - chr3R 12585860 intron Octbeta2R - chr3R_6_12585001 chr3R_12585001 RAL-380 1399 chr3R 12644418 12644450 chr3R 12644499 12644504 13 78 3.5 2.0 2.8 3.4 86 chr3R 12644418 intergenic not near genes chr3R 12644461 intergenic not near genes chr3R 12644504 intergenic not near genes chr3R_13_12640001 chr3R_12640001 RAL-380 1400 chr3R 12666776 12666796 chr3R 12666896 12666923 4 125 8.0 2.5 5.2 0.6 147 chr3R 12666776 intron CG14395 + chr3R 12666850 intron CG14395 + chr3R 12666923 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-380 1401 chr3R 12703274 12703299 chr3R 12703461 12703485 15 186 5.0 5.0 5.0 2.5 211 chr3R 12703274 intron Past1 + chr3R 12703380 intron Past1 + chr3R 12703485 intron Past1 + chr3R_15_12700001 chr3R_12700001 RAL-380 1402 chr3R 12706468 12706480 chr3R 12715781 12715792 5 9312 43.5 26.5 35.0 0.1 9324 chr3R 12706468 exon mus308 - chr3R 12711130 exon mus308 - chr3R 12715792 intron Men - chr3R_5_12710001 chr3R_12710001 RAL-380 1403 chr3R 12758126 12758131 chr3R 12758220 12758225 4 94 9.0 4.5 6.8 0.5 99 chr3R 12758126 intron beat-Vc - chr3R 12758176 intron beat-Vc - chr3R 12758225 intron beat-Vc - chr3R_4_12755001 chr3R_12755001 RAL-380 1404 chr3R 12758142 12758152 chr3R 12758219 12758240 4 88 3.5 4.0 3.8 0.8 98 chr3R 12758142 intron beat-Vc - chr3R 12758191 intron beat-Vc - chr3R 12758240 intron beat-Vc - chr3R_4_12755001 chr3R_12755001 RAL-380 1405 chr3R 12814241 12814267 chr3R 12814318 12814344 4 76 0.0 2.5 1.2 1.8 103 chr3R 12814241 intron CG31345 - chr3R 12814292 intron CG31345 - chr3R 12814344 intron CG31345 - chr3R_4_12810001 chr3R_12810001 RAL-380 1406 chr3R 12920155 12920186 chr3R 12925358 12925389 copia 10 5200 0.0 5.5 2.8 2.6 5234 chr3R 12920155 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_10_12920001 chr3R_12920001 RAL-380 1407 chr3R 13067009 13067132 chr3R 13067096 13067208 9 77 0.0 0.0 0.0 9.0 199 chr3R 13067009 intron sim + chr3R 13067108 intron sim + chr3R 13067208 intron sim + chr3R_9_13065001 chr3R_13065001 RAL-380 1408 chr3R 13120784 13120796 chr3R 13120847 13120855 7 68 4.0 2.0 3.0 1.8 71 chr3R 13120784 intron timeout + chr3R 13120820 intron timeout + chr3R 13120855 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-380 1409 chr3R 13135826 13135858 chr3R 13138001 13138033 pogo 7 2175 2.5 2.0 2.2 2.2 2207 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138033 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-380 1410 chr3R 13143040 13143065 chr3R 13148615 13148641 mdg3 9 5572 2.0 6.0 4.0 1.8 5601 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-380 1411 chr3R 13195957 13195968 chr3R 13196049 13196063 4 94 6.5 4.5 5.5 0.6 106 chr3R 13195957 intergenic not near genes chr3R 13196010 intergenic not near genes chr3R 13196063 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-380 1412 chr3R 13195970 13195984 chr3R 13196045 13196063 8 85 4.5 3.0 3.8 1.7 93 chr3R 13195970 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196063 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-380 1413 chr3R 13197174 13197195 chr3R 13198454 13198475 8 1279 9.0 13.5 11.2 0.7 1301 chr3R 13197174 intergenic not near genes chr3R 13197824 intergenic not near genes chr3R 13198475 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-380 1414 chr3R 13197026 13197053 chr3R 13198496 13198529 6 1471 16.0 14.5 15.2 0.4 1503 chr3R 13197026 intergenic not near genes chr3R 13197778 intergenic not near genes chr3R 13198529 intergenic not near genes chr3R_6_13195001 chr3R_13195001 RAL-380 1415 chr3R 13201773 13201798 chr3R 13201869 13201892 12 96 0.0 2.0 1.0 6.0 119 chr3R 13201773 intergenic not near genes chr3R 13201832 intergenic not near genes chr3R 13201892 intergenic not near genes chr3R_12_13200001 chr3R_13200001 RAL-380 1416 chr3R 13206654 13206671 chr3R 13206891 13206906 4 236 4.5 2.5 3.5 0.9 252 chr3R 13206654 intergenic not near genes chr3R 13206780 intergenic not near genes chr3R 13206906 intergenic not near genes chr3R_4_13205001 chr3R_13205001 RAL-380 1417 chr3R 7773344 7773344 chr3R 13217322 13217322 4 5443978 10.5 14.5 12.5 0.3 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-380 1418 chr3R 13314110 13314122 chr3R 13318886 13318909 Doc 6 4783 3.0 3.0 3.0 1.5 4799 chr3R 13314110 intergenic not near genes chr3R 13316510 intergenic not near genes chr3R 13318909 intergenic CG45080 - chr3R_6_13315001 chr3R_13315001 RAL-380 1419 chr3R 13364640 13364650 chr3R 13364723 13364734 5 83 1.0 0.0 0.5 3.3 94 chr3R 13364640 intron poly - chr3R 13364687 intron poly - chr3R 13364734 intron poly - chr3R_5_13360001 chr3R_13360001 RAL-380 1420 chr3R 13418664 13418681 chr3R 13418740 13418757 7 75 2.0 2.5 2.2 2.2 93 chr3R 13418664 intergenic not near genes chr3R 13418710 intergenic not near genes chr3R 13418757 intergenic not near genes chr3R_7_13415001 chr3R_13415001 RAL-380 1421 chr3R 13435388 13435416 chr3R 13435563 13435591 8 175 1.5 2.5 2.0 2.7 203 chr3R 13435388 intergenic yrt - chr3R 13435490 intergenic not near genes chr3R 13435591 intergenic not near genes chr3R_8_13435001 chr3R_13435001 RAL-380 1422 chr3R 13554149 13554174 chr3R 13554228 13554251 8 79 2.0 6.0 4.0 1.6 102 chr3R 13554149 intergenic not near genes chr3R 13554200 intergenic not near genes chr3R 13554251 intergenic not near genes chr3R_8_13550001 chr3R_13550001 RAL-380 1423 chr3R 13555686 13555711 chr3R 13555764 13555771 4 73 1.5 0.0 0.8 2.2 85 chr3R 13555686 intergenic not near genes chr3R 13555728 intergenic not near genes chr3R 13555771 intergenic not near genes chr3R_4_13555001 chr3R_13555001 RAL-380 1424 chr3R 13603058 13603352 chr3R 13603148 13603444 7 91 4.0 4.0 4.0 1.4 386 chr3R 13603058 intergenic not near genes chr3R 13603251 intergenic not near genes chr3R 13603444 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-380 1425 chr3R 13603357 13603369 chr3R 13603449 13603461 5 92 1.5 3.5 2.5 1.4 104 chr3R 13603357 intergenic not near genes chr3R 13603409 intergenic not near genes chr3R 13603461 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-380 1426 chr3R 13604066 13604092 chr3R 13604296 13604327 4 233 0.5 2.5 1.5 1.6 261 chr3R 13604066 intergenic not near genes chr3R 13604196 intergenic not near genes chr3R 13604327 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-380 1427 chr3R 13606705 13606727 chr3R 13606852 13606874 6 146 6.0 0.0 3.0 1.5 169 chr3R 13606705 intergenic CG9759 - chr3R 13606790 intergenic CG9759 - chr3R 13606874 intergenic CG9759 - chr3R_6_13605001 chr3R_13605001 RAL-380 1428 chr3R 13625697 13625723 chr3R 13625777 13625804 4 81 0.0 1.5 0.8 2.2 107 chr3R 13625697 intergenic not near genes chr3R 13625750 intergenic not near genes chr3R 13625804 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-380 1429 chr3R 13693028 13693028 chr3R 21907534 21907536 5 8214507 14.5 25.5 20.0 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-380 1430 chr3R 13712622 13712640 chr3R 13712718 13712737 5 96 3.5 2.0 2.8 1.3 115 chr3R 13712622 3` UTR CR34044 - chr3R 13712680 3` UTR CR34044 - chr3R 13712737 3` UTR CR34044 - chr3R_5_13710001 chr3R_13710001 RAL-380 1431 chr3R 13782059 13782089 chr3R 13782140 13782170 6 81 2.0 4.0 3.0 1.5 111 chr3R 13782059 exon CG9286 + chr3R 13782114 intergenic CG9286 +,Dip-B + chr3R 13782170 intergenic CG9286 +,Dip-B + chr3R_6_13780001 chr3R_13780001 RAL-380 1432 chr3R 13847501 13847523 chr3R 13847576 13847599 6 76 3.5 4.0 3.8 1.2 98 chr3R 13847501 intergenic not near genes chr3R 13847550 intergenic not near genes chr3R 13847599 intergenic not near genes chr3R_6_13845001 chr3R_13845001 RAL-380 1433 chr3R 13863683 13863695 chr3R 13863771 13863782 6 88 8.0 4.5 6.2 0.8 99 chr3R 13863683 intergenic not near genes chr3R 13863732 intergenic not near genes chr3R 13863782 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-380 1434 chr3R 13926003 13926016 chr3R 13926063 13926093 5 73 5.5 3.5 4.5 0.9 90 chr3R 13926003 intergenic not near genes chr3R 13926048 intergenic not near genes chr3R 13926093 intergenic not near genes chr3R_5_13925001 chr3R_13925001 RAL-380 1435 chr3R 13948233 13948243 chr3R 13948312 13948322 5 79 0.5 2.0 1.2 2.3 89 chr3R 13948233 intergenic CG31517 + chr3R 13948278 intergenic CG31517 + chr3R 13948322 intergenic CG31517 + chr3R_5_13945001 chr3R_13945001 RAL-380 1436 chr3R 14003318 14003336 chr3R 14003512 14003530 7 192 1.5 5.0 3.2 1.7 212 chr3R 14003318 intron rdx - chr3R 14003424 intron rdx - chr3R 14003530 intron rdx - chr3R_7_14000001 chr3R_14000001 RAL-380 1437 chr3R 14021642 14021651 chr3R 14023464 14023475 S-element 4 1823 6.0 1.5 3.8 0.8 1833 chr3R 14021642 intron rdx - chr3R 14022558 intron rdx - chr3R 14023475 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-380 1438 chr3R 14067144 14067152 chr3R 14067223 14067231 4 78 3.5 0.5 2.0 1.3 87 chr3R 14067144 exon foxo + chr3R 14067188 intron foxo + chr3R 14067231 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-380 1439 chr3R 14117439 14117463 chr3R 14117514 14117520 11 73 3.0 1.5 2.2 3.4 81 chr3R 14117439 intron Kif19A - chr3R 14117480 intron Kif19A - chr3R 14117520 intron Kif19A - chr3R_11_14115001 chr3R_14115001 RAL-380 1440 chr3R 14163662 14163686 chr3R 14163733 14163762 6 74 3.5 2.0 2.8 1.6 100 chr3R 14163662 intergenic CG3199 + chr3R 14163712 intergenic CG3199 + chr3R 14163762 intergenic CG3199 + chr3R_6_14160001 chr3R_14160001 RAL-380 1441 chr3R 14166691 14166699 chr3R 14167320 14167344 4 641 3.0 3.5 3.2 1.0 653 chr3R 14166691 3` UTR Dop1R1 - chr3R 14167018 3` UTR Dop1R1 - chr3R 14167344 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-380 1442 chr3R 14194436 14194459 chr3R 14203585 14203608 roo 10 9149 4.5 4.5 4.5 1.8 9172 chr3R 14194436 intron Dop1R1 - chr3R 14199022 intron Dop1R1 - chr3R 14203608 intron Dop1R1 - chr3R_10_14195001 chr3R_14195001 RAL-380 1443 chr3R 14246391 14246413 chr3R 14247887 14247908 jockey 7 1492 6.5 2.5 4.5 1.3 1517 chr3R 14246391 intergenic not near genes chr3R 14247150 intergenic not near genes chr3R 14247908 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-380 1444 chr3R 14278428 14278453 chr3R 14278510 14278535 4 82 1.5 4.0 2.8 1.1 107 chr3R 14278428 intron trx - chr3R 14278482 intron trx - chr3R 14278535 intron trx - chr3R_4_14275001 chr3R_14275001 RAL-380 1445 chr3R 14426048 14426078 chr3R 14426152 14426180 14 103 2.0 1.5 1.8 5.0 132 chr3R 14426048 intron cv-c - chr3R 14426114 intron cv-c - chr3R 14426180 intron cv-c - chr3R_14_14425001 chr3R_14425001 RAL-380 1446 chr3R 14497405 14497439 chr3R 14497486 14497519 10 79 3.0 1.5 2.2 3.1 114 chr3R 14497405 intron CR44177 + chr3R 14497462 intron CR44177 + chr3R 14497519 intron CR44177 + chr3R_10_14495001 chr3R_14495001 RAL-380 1447 chr3R 14572125 14572139 chr3R 14572200 14572220 10 80 6.5 3.0 4.8 1.7 95 chr3R 14572125 exon CG7987 - chr3R 14572172 exon CG7987 - chr3R 14572220 exon CG7987 - chr3R_10_14570001 chr3R_14570001 RAL-380 1448 chr3R 14704382 14704412 chr3R 14704459 14704488 13 76 2.5 2.5 2.5 3.7 106 chr3R 14704382 intron kibra - chr3R 14704435 intron kibra - chr3R 14704488 intron kibra - chr3R_13_14700001 chr3R_14700001 RAL-380 1449 chr3R 14795666 14795694 chr3R 14795751 14795779 5 85 1.0 1.5 1.2 2.3 113 chr3R 14795666 3` UTR jvl + chr3R 14795722 3` UTR jvl + chr3R 14795779 3` UTR jvl + chr3R_5_14795001 chr3R_14795001 RAL-380 1450 chr3R 14865137 14865157 chr3R 14865245 14865265 9 108 3.0 5.0 4.0 1.8 128 chr3R 14865137 intron btsz - chr3R 14865201 intron btsz - chr3R 14865265 intron btsz - chr3R_9_14865001 chr3R_14865001 RAL-380 1451 chr3R 15059276 15059479 chr3R 15059470 15059566 BS 7 115 0.0 0.0 0.0 7.0 290 chr3R 15059276 intron dpr9 - chr3R 15059421 intron dpr9 - chr3R 15059566 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-380 1452 chr3R 15079806 15079836 chr3R 15080047 15080076 pogo 7 239 3.0 1.0 2.0 2.3 270 chr3R 15079806 3` UTR CG6966 - chr3R 15079941 3` UTR CG6966 - chr3R 15080076 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-380 1453 chr3R 15127781 15127809 chr3R 15127860 15127875 9 78 2.5 0.5 1.5 3.6 94 chr3R 15127781 intron CG42788 - chr3R 15127828 intron CG42788 - chr3R 15127875 intron CG42788 - chr3R_9_15125001 chr3R_15125001 RAL-380 1454 chr3R 15132057 15132062 chr3R 15135117 15135122 Juan 8 3059 17.5 11.0 14.2 0.5 3065 chr3R 15132057 intergenic CG42788 - chr3R 15133590 intergenic not near genes chr3R 15135122 intergenic CG6912 - chr3R_8_15130001 chr3R_15130001 RAL-380 1455 chr3R 15132063 15132082 chr3R 15135115 15135139 Juan 11 3059 11.0 10.0 10.5 1.0 3076 chr3R 15132063 intergenic CG42788 - chr3R 15133601 intergenic not near genes chr3R 15135139 3` UTR CG6912 - chr3R_11_15130001 chr3R_15130001 RAL-380 1456 chr3R 15162557 15162578 chr3R 15167309 15167345 F-element 6 4764 6.0 2.0 4.0 1.2 4788 chr3R 15162557 intron Gyc88E + chr3R 15164951 intron Gyc88E + chr3R 15167345 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-380 1457 chr3R 15416247 15416283 chr3R 15416326 15416363 6 77 2.5 6.0 4.2 1.2 116 chr3R 15416247 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416363 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-380 1458 chr3R 15459260 15459272 chr3R 15459322 15459345 6 72 0.5 2.0 1.2 2.7 85 chr3R 15459260 intron AdamTS-A - chr3R 15459302 intron AdamTS-A - chr3R 15459345 intron AdamTS-A - chr3R_6_15455001 chr3R_15455001 RAL-380 1459 chr3R 15517598 15517631 chr3R 15517681 15517714 7 81 3.0 3.5 3.2 1.7 116 chr3R 15517598 intergenic not near genes chr3R 15517656 intergenic not near genes chr3R 15517714 intergenic not near genes chr3R_7_15515001 chr3R_15515001 RAL-380 1460 chr3R 15601168 15601193 chr3R 15608690 15608715 412 10 7518 6.5 3.5 5.0 1.7 7547 chr3R 15601168 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-380 1461 chr3R 15646790 15646797 chr3R 15646872 15646880 7 83 2.0 2.5 2.2 2.2 90 chr3R 15646790 intergenic not near genes chr3R 15646835 intergenic not near genes chr3R 15646880 intergenic not near genes chr3R_7_15645001 chr3R_15645001 RAL-380 1462 chr3R 15676551 15676579 chr3R 15676630 15676658 5 78 0.5 2.5 1.5 2.0 107 chr3R 15676551 intron pxb + chr3R 15676604 intron pxb + chr3R 15676658 intron pxb + chr3R_5_15675001 chr3R_15675001 RAL-380 1463 chr3R 15778728 15778756 chr3R 15778836 15778849 10 106 1.5 3.0 2.2 3.1 121 chr3R 15778728 intergenic not near genes chr3R 15778788 intergenic not near genes chr3R 15778849 intergenic not near genes chr3R_10_15775001 chr3R_15775001 RAL-380 1464 chr3R 15878090 15878099 chr3R 15878178 15878187 5 88 2.5 1.0 1.8 1.8 97 chr3R 15878090 intergenic not near genes chr3R 15878138 intergenic not near genes chr3R 15878187 intergenic not near genes chr3R_5_15875001 chr3R_15875001 RAL-380 1465 chr3R 15991931 15991943 chr3R 15992009 15992019 7 78 5.5 3.5 4.5 1.3 88 chr3R 15991931 intron,intron srp +,CR44133 + chr3R 15991975 intron,intron srp +,CR44133 + chr3R 15992019 intron,intron srp +,CR44133 + chr3R_7_15990001 chr3R_15990001 RAL-380 1466 chr3R 15991944 15991961 chr3R 15992007 15992038 5 75 3.5 3.5 3.5 1.1 94 chr3R 15991944 intron,intron srp +,CR44133 + chr3R 15991991 intron,intron srp +,CR44133 + chr3R 15992038 intron,intron srp +,CR44133 + chr3R_5_15990001 chr3R_15990001 RAL-380 1467 chr3R 16033412 16033426 chr3R 16033493 16033507 8 80 3.0 3.0 3.0 2.0 95 chr3R 16033412 intron pnr + chr3R 16033460 intron pnr + chr3R 16033507 intron pnr + chr3R_8_16030001 chr3R_16030001 RAL-380 1468 chr3R 16073445 16073474 chr3R 16073549 16073562 5 97 1.5 1.5 1.5 2.0 117 chr3R 16073445 intron Mhcl - chr3R 16073504 intron Mhcl - chr3R 16073562 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-380 1469 chr3R 16105645 16105661 chr3R 16105765 16105781 4 120 3.0 2.5 2.8 1.1 136 chr3R 16105645 3` UTR Akt1 + chr3R 16105713 intergenic Akt1 + chr3R 16105781 intergenic Akt1 + chr3R_4_16105001 chr3R_16105001 RAL-380 1470 chr3R 16189408 16189443 chr3R 16189811 16189845 invader4 11 402 2.0 1.5 1.8 3.9 437 chr3R 16189408 intron sra + chr3R 16189626 intron sra + chr3R 16189845 intron sra + chr3R_11_16185001 chr3R_16185001 RAL-380 1471 chr3R 16225089 16225112 chr3R 16225174 16225196 7 85 2.5 2.5 2.5 2.0 107 chr3R 16225089 intergenic not near genes chr3R 16225142 intergenic not near genes chr3R 16225196 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-380 1472 chr3R 16472580 16472595 chr3R 16472656 16472671 5 76 6.5 6.5 6.5 0.7 91 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472671 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-380 1473 chr3R 16732155 16732177 chr3R 16732251 16732273 4 96 0.5 4.0 2.2 1.2 118 chr3R 16732155 intron Ubx - chr3R 16732214 intron Ubx - chr3R 16732273 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-380 1474 chr3R 16756320 16756354 chr3R 16762511 16762545 diver 10 6191 1.0 1.0 1.0 5.0 6225 chr3R 16756320 intron bxd - chr3R 16759432 intron bxd - chr3R 16762545 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-380 1475 chr3R 16921828 16921862 chr3R 16921912 16921946 12 84 2.5 2.0 2.2 3.8 118 chr3R 16921828 intron iab-8 - chr3R 16921887 intron iab-8 - chr3R 16921946 intron iab-8 - chr3R_12_16920001 chr3R_16920001 RAL-380 1476 chr3R 17121524 17121555 chr3R 17121719 17121741 6 190 4.0 2.0 3.0 1.5 217 chr3R 17121524 intron cher - chr3R 17121632 intron,exon cher -,CG42779 + chr3R 17121741 intron,exon cher -,CG42779 + chr3R_6_17120001 chr3R_17120001 RAL-380 1477 chr3R 17180328 17180344 chr3R 17180389 17180420 12 72 1.5 3.5 2.5 3.4 92 chr3R 17180328 intron Mur89F - chr3R 17180374 intron Mur89F - chr3R 17180420 intron Mur89F - chr3R_12_17180001 chr3R_17180001 RAL-380 1478 chr3R 17208864 17208892 chr3R 17208940 17208946 5 68 4.0 0.0 2.0 1.7 82 chr3R 17208864 intergenic not near genes chr3R 17208905 intergenic not near genes chr3R 17208946 intergenic not near genes chr3R_5_17205001 chr3R_17205001 RAL-380 1479 chr3R 17234968 17234989 chr3R 17235108 17235125 8 138 1.0 5.5 3.2 1.9 157 chr3R 17234968 intron beat-IIb - chr3R 17235046 intron beat-IIb - chr3R 17235125 intron beat-IIb - chr3R_8_17235001 chr3R_17235001 RAL-380 1480 chr3R 17294661 17294687 chr3R 17295089 17295114 BS 5 428 3.0 0.0 1.5 2.0 453 chr3R 17294661 intergenic not near genes chr3R 17294888 intergenic not near genes chr3R 17295114 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-380 1481 chr3R 17346697 17346718 chr3R 17348260 17348281 F-element 6 1562 1.5 5.0 3.2 1.4 1584 chr3R 17346697 intron beat-IIa - chr3R 17347489 intron beat-IIa - chr3R 17348281 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-380 1482 chr3R 17354809 17354825 chr3R 17355027 17355030 9 216 2.5 4.0 3.2 2.1 221 chr3R 17354809 intron beat-IIa - chr3R 17354920 intron beat-IIa - chr3R 17355030 intron beat-IIa - chr3R_9_17350001 chr3R_17350001 RAL-380 1483 chr3R 17355494 17355520 chr3R 17355571 17355597 7 77 3.5 2.5 3.0 1.8 103 chr3R 17355494 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355597 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-380 1484 chr3R 17461211 17461222 chr3R 17461293 17461304 4 82 2.5 3.0 2.8 1.1 93 chr3R 17461211 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461304 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-380 1485 chr3R 17521569 17521590 chr3R 17521728 17521750 4 155 1.5 5.0 3.2 1.0 181 chr3R 17521569 intergenic not near genes chr3R 17521660 intergenic not near genes chr3R 17521750 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-380 1486 chr3R 17522212 17522239 chr3R 17522305 17522315 5 88 1.0 0.0 0.5 3.3 103 chr3R 17522212 intergenic not near genes chr3R 17522264 intergenic not near genes chr3R 17522315 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-380 1487 chr3R 17591284 17591320 chr3R 17591720 17591739 F-element 8 426 6.5 2.5 4.5 1.5 455 chr3R 17591284 intergenic not near genes chr3R 17591512 intergenic not near genes chr3R 17591739 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-380 1488 chr3R 17644675 17644704 chr3R 17645104 17645132 11 429 3.0 2.5 2.8 2.9 457 chr3R 17644675 intron CG43175 + chr3R 17644904 intron CG43175 + chr3R 17645132 intron CG43175 + chr3R_11_17640001 chr3R_17640001 RAL-380 1489 chr3R 17673262 17673292 chr3R 17676452 17676482 12 3192 29.0 35.5 32.2 0.4 3220 chr3R 17673262 exon ald + chr3R 17674872 intron alt - chr3R 17676482 exon alt - chr3R_12_17670001 chr3R_17670001 RAL-380 1490 chr3R 17714671 17714698 chr3R 17714750 17714775 8 76 3.5 4.0 3.8 1.7 104 chr3R 17714671 intron osa - chr3R 17714723 intron osa - chr3R 17714775 intron osa - chr3R_8_17710001 chr3R_17710001 RAL-380 1491 chr3R 17823209 17823232 chr3R 17823294 17823314 5 84 2.0 1.5 1.8 1.8 105 chr3R 17823209 intron tinc + chr3R 17823262 intron tinc + chr3R 17823314 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-380 1492 chr3R 17899091 17899104 chr3R 17899169 17899182 5 78 1.5 2.0 1.8 1.8 91 chr3R 17899091 intron Rim - chr3R 17899136 intron Rim - chr3R 17899182 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-380 1493 chr3R 17925863 17925875 chr3R 17927321 17927341 hobo 8 1463 8.0 9.0 8.5 0.8 1478 chr3R 17925863 intron cpo + chr3R 17926602 intron cpo + chr3R 17927341 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-380 1494 chr3R 17925877 17925888 chr3R 17927319 17927353 hobo 7 1462 4.5 7.5 6.0 1.0 1476 chr3R 17925877 intron cpo + chr3R 17926615 intron cpo + chr3R 17927353 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-380 1495 chr3R 18098274 18098286 chr3R 18098351 18098363 4 76 0.5 0.5 0.5 2.7 89 chr3R 18098274 intron sr + chr3R 18098318 intron sr + chr3R 18098363 intron sr + chr3R_4_18095001 chr3R_18095001 RAL-380 1496 chr3R 18143584 18143590 chr3R 18143673 18143679 4 89 2.0 5.0 3.5 0.9 95 chr3R 18143584 intergenic not near genes chr3R 18143632 intergenic not near genes chr3R 18143679 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-380 1497 chr3R 18157612 18157618 chr3R 18157720 18157726 5 108 0.0 2.0 1.0 2.5 114 chr3R 18157612 intergenic CR45103 + chr3R 18157669 intergenic CR45103 + chr3R 18157726 5` UTR CR45103 + chr3R_5_18155001 chr3R_18155001 RAL-380 1498 chr3R 4904880 4904888 chr3R 18214588 18214590 4 13309704 11.5 16.5 14.0 0.3 13309710 chr3R 4904880 intergenic not near genes chr3R 11559735 3` UTR CG10898 + chr3R 18214590 3` UTR CG7985 + chr3R_4_11555001 chr3R_11555001 RAL-380 1499 chr3R 18394471 18394501 chr3R 18394548 18394577 11 75 3.0 3.0 3.0 2.8 106 chr3R 18394471 intron Vha100-2 - chr3R 18394524 intron Vha100-2 - chr3R 18394577 intron Vha100-2 - chr3R_11_18390001 chr3R_18390001 RAL-380 1500 chr3R 18464320 18464340 chr3R 18464452 18464479 4 137 2.0 3.5 2.8 1.1 159 chr3R 18464320 intron fru - chr3R 18464400 intron fru - chr3R 18464479 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-380 1501 chr3R 18501591 18501620 chr3R 18501671 18501701 8 80 5.5 1.5 3.5 1.8 110 chr3R 18501591 intron fru - chr3R 18501646 intron fru - chr3R 18501701 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-380 1502 chr3R 18575571 18575602 chr3R 18575655 18575686 8 82 5.5 6.0 5.8 1.2 115 chr3R 18575571 intron,intron CG7694 +,fray + chr3R 18575628 intron,intron CG7694 +,fray + chr3R 18575686 intron,intron CG7694 +,fray + chr3R_8_18575001 chr3R_18575001 RAL-380 1503 chr3R 18603945 18603967 chr3R 18604022 18604044 7 76 3.5 2.0 2.8 1.8 99 chr3R 18603945 intron,intron qin +,CG14304 - chr3R 18603994 intron,intron qin +,CG14304 - chr3R 18604044 intron,intron qin +,CG14304 - chr3R_7_18600001 chr3R_18600001 RAL-380 1504 chr3R 18606507 18606530 chr3R 18610739 18610762 F-element 8 4232 3.0 4.0 3.5 1.8 4255 chr3R 18606507 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_8_18605001 chr3R_18605001 RAL-380 1505 chr3R 18618278 18618283 chr3R 18618363 18618367 4 84 3.0 0.5 1.8 1.4 89 chr3R 18618278 intron,intron qin +,CG14304 - chr3R 18618322 intron,intron qin +,CG14304 - chr3R 18618367 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-380 1506 chr3R 18670380 18670411 chr3R 18670473 18670504 9 93 1.5 2.0 1.8 3.2 124 chr3R 18670380 intron CG7702 + chr3R 18670442 intron CG7702 + chr3R 18670504 intron CG7702 + chr3R_9_18670001 chr3R_18670001 RAL-380 1507 chr3R 18746966 18746991 chr3R 18747058 18747083 5 92 1.5 0.5 1.0 2.5 117 chr3R 18746966 intron gwl + chr3R 18747024 intron gwl + chr3R 18747083 intron gwl + chr3R_5_18745001 chr3R_18745001 RAL-380 1508 chr3R 18791498 18791519 chr3R 18791577 18791597 5 78 1.0 1.5 1.2 2.3 99 chr3R 18791498 intron CG7720 - chr3R 18791548 intron CG7720 - chr3R 18791597 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-380 1509 chr3R 18808475 18808502 chr3R 18808551 18808555 4 69 2.5 3.0 2.8 1.1 80 chr3R 18808475 intron CG18208 - chr3R 18808515 intron CG18208 - chr3R 18808555 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-380 1510 chr3R 18812081 18812107 chr3R 18812159 18812185 13 77 1.0 2.5 1.8 4.6 104 chr3R 18812081 intron CG18208 - chr3R 18812133 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-380 1511 chr3R 18817517 18817520 chr3R 18817615 18817618 4 98 3.0 1.0 2.0 1.3 101 chr3R 18817517 intron CG18208 - chr3R 18817568 intron CG18208 - chr3R 18817618 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-380 1512 chr3R 18894785 18894810 chr3R 18894866 18894866 5 76 6.5 4.5 5.5 0.8 81 chr3R 18894785 intergenic not near genes chr3R 18894826 intergenic not near genes chr3R 18894866 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-380 1513 chr3R 18988536 18988559 chr3R 18988795 18988818 5 258 3.0 7.0 5.0 0.8 282 chr3R 18988536 intron gukh + chr3R 18988677 intron gukh + chr3R 18988818 intron gukh + chr3R_5_18985001 chr3R_18985001 RAL-380 1514 chr3R 18991390 18991401 chr3R 18991465 18991478 6 76 7.0 4.5 5.8 0.9 88 chr3R 18991390 intron gukh + chr3R 18991434 intron gukh + chr3R 18991478 intron gukh + chr3R_6_18990001 chr3R_18990001 RAL-380 1515 chr3R 18991405 18991421 chr3R 18991462 18991497 8 69 3.0 3.5 3.2 1.9 92 chr3R 18991405 intron gukh + chr3R 18991451 intron gukh + chr3R 18991497 intron gukh + chr3R_8_18990001 chr3R_18990001 RAL-380 1516 chr3R 19146677 19146694 chr3R 19146825 19146842 6 148 5.0 1.0 3.0 1.5 165 chr3R 19146677 intron Ppcs - chr3R 19146760 intron Ppcs - chr3R 19146842 intron Ppcs - chr3R_6_19145001 chr3R_19145001 RAL-380 1517 chr3R 19274332 19274351 chr3R 19274420 19274440 4 88 1.0 6.0 3.5 0.9 108 chr3R 19274332 intergenic not near genes chr3R 19274386 intergenic not near genes chr3R 19274440 intergenic not near genes chr3R_4_19270001 chr3R_19270001 RAL-380 1518 chr3R 19372993 19373025 chr3R 19373075 19373082 5 77 3.0 2.5 2.8 1.3 89 chr3R 19372993 intron Ino80 - chr3R 19373038 intron Ino80 - chr3R 19373082 intron Ino80 - chr3R_5_19370001 chr3R_19370001 RAL-380 1519 chr3R 19414592 19414615 chr3R 19414669 19414692 5 76 2.0 3.5 2.8 1.3 100 chr3R 19414592 intron CG31221 + chr3R 19414642 intron CG31221 + chr3R 19414692 intron CG31221 + chr3R_5_19410001 chr3R_19410001 RAL-380 1520 chr3R 19602759 19602788 chr3R 19602837 19602866 5 78 3.0 1.5 2.2 1.6 107 chr3R 19602759 intergenic CG7333 + chr3R 19602812 intergenic CG7333 + chr3R 19602866 intergenic CG7333 + chr3R_5_19600001 chr3R_19600001 RAL-380 1521 chr3R 19668647 19668679 chr3R 19668720 19668730 12 68 6.0 5.5 5.8 1.8 83 chr3R 19668647 exon CG7432 + chr3R 19668688 exon CG7432 + chr3R 19668730 exon CG7432 + chr3R_12_19665001 chr3R_19665001 RAL-380 1522 chr3R 19757863 19757877 chr3R 19757953 19757955 10 88 12.5 5.0 8.8 1.0 92 chr3R 19757863 exon GluClalpha + chr3R 19757909 intron GluClalpha + chr3R 19757955 intron GluClalpha + chr3R_10_19755001 chr3R_19755001 RAL-380 1523 chr3R 19757878 19757893 chr3R 19757952 19757960 8 81 7.0 5.0 6.0 1.1 82 chr3R 19757878 exon GluClalpha + chr3R 19757919 intron GluClalpha + chr3R 19757960 intron GluClalpha + chr3R_8_19755001 chr3R_19755001 RAL-380 1524 chr3R 19957275 19957296 chr3R 19957349 19957372 10 73 4.0 5.5 4.8 1.7 97 chr3R 19957275 intron Hs6st - chr3R 19957324 intron Hs6st - chr3R 19957372 intron Hs6st - chr3R_10_19955001 chr3R_19955001 RAL-380 1525 chr3R 20060631 20060653 chr3R 20060714 20060736 5 83 5.5 2.0 3.8 1.0 105 chr3R 20060631 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060736 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-380 1526 chr3R 20066115 20066141 chr3R 20066305 20066305 6 186 2.5 2.5 2.5 1.7 190 chr3R 20066115 intergenic not near genes chr3R 20066210 intergenic not near genes chr3R 20066305 intergenic not near genes chr3R_6_20065001 chr3R_20065001 RAL-380 1527 chr3R 20066551 20066578 chr3R 20066787 20066813 6 236 1.0 1.0 1.0 3.0 262 chr3R 20066551 intergenic not near genes chr3R 20066682 intergenic not near genes chr3R 20066813 intergenic not near genes chr3R_6_20065001 chr3R_20065001 RAL-380 1528 chr3R 20084416 20084446 chr3R 20084656 20084687 6 240 2.5 3.0 2.8 1.6 271 chr3R 20084416 intergenic not near genes chr3R 20084552 intergenic not near genes chr3R 20084687 intergenic not near genes chr3R_6_20080001 chr3R_20080001 RAL-380 1529 chr3R 20109537 20109570 chr3R 20114743 20114776 copia 5 5206 2.5 1.5 2.0 1.7 5239 chr3R 20109537 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-380 1530 chr3R 20205406 20205589 chr3R 20205523 20205711 7 114 2.5 2.5 2.5 2.0 305 chr3R 20205406 intron Nlg4 + chr3R 20205558 intron Nlg4 + chr3R 20205711 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-380 1531 chr3R 20209803 20209825 chr3R 20209885 20209910 5 85 2.5 2.0 2.2 1.6 107 chr3R 20209803 intron Nlg4 + chr3R 20209856 intron Nlg4 + chr3R 20209910 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-380 1532 chr3R 20237203 20237222 chr3R 20237279 20237300 6 77 2.5 6.0 4.2 1.2 97 chr3R 20237203 intron Nlg4 + chr3R 20237252 intron Nlg4 + chr3R 20237300 intron Nlg4 + chr3R_6_20235001 chr3R_20235001 RAL-380 1533 chr3R 20245277 20245303 chr3R 20248887 20248913 F-element 5 3610 0.0 2.0 1.0 2.5 3636 chr3R 20245277 3` UTR Nlg4 + chr3R 20247095 intergenic not near genes chr3R 20248913 intergenic not near genes chr3R_5_20245001 chr3R_20245001 RAL-380 1534 chr3R 20256858 20256871 chr3R 20256936 20256949 5 78 0.0 6.0 3.0 1.2 91 chr3R 20256858 intron cic + chr3R 20256904 intron cic + chr3R 20256949 intron cic + chr3R_5_20255001 chr3R_20255001 RAL-380 1535 chr3R 20266519 20266546 chr3R 20272989 20273017 Burdock 6 6470 2.0 5.5 3.8 1.2 6498 chr3R 20266519 intron cic + chr3R 20269768 intron cic + chr3R 20273017 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-380 1536 chr3R 20331001 20331030 chr3R 20331487 20331512 roo 8 485 1.0 2.0 1.5 3.2 511 chr3R 20331001 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331512 intergenic not near genes chr3R_8_20330001 chr3R_20330001 RAL-380 1537 chr3R 20345394 20345399 chr3R 20345483 20345487 4 88 0.0 0.0 0.0 4.0 93 chr3R 20345394 intergenic not near genes chr3R 20345440 intergenic not near genes chr3R 20345487 intergenic not near genes chr3R_4_20345001 chr3R_20345001 RAL-380 1538 chr3R 20366279 20366303 chr3R 20366364 20366389 11 84 3.0 8.0 5.5 1.7 110 chr3R 20366279 intergenic not near genes chr3R 20366334 intergenic not near genes chr3R 20366389 intergenic not near genes chr3R_11_20365001 chr3R_20365001 RAL-380 1539 chr3R 20367369 20367378 chr3R 20367445 20367454 4 76 2.0 4.0 3.0 1.0 85 chr3R 20367369 intergenic not near genes chr3R 20367412 intergenic not near genes chr3R 20367454 intergenic not near genes chr3R_4_20365001 chr3R_20365001 RAL-380 1540 chr3R 20409208 20409231 chr3R 20409316 20409339 8 108 6.0 2.0 4.0 1.6 131 chr3R 20409208 intron,3` UTR Gfrl -,CG10881 + chr3R 20409274 intron Gfrl - chr3R 20409339 intron Gfrl - chr3R_8_20405001 chr3R_20405001 RAL-380 1541 chr3R 20467077 20467113 chr3R 20467150 20467189 8 75 4.0 3.5 3.8 1.7 112 chr3R 20467077 intron Gfrl - chr3R 20467133 intron Gfrl - chr3R 20467189 intron Gfrl - chr3R_8_20465001 chr3R_20465001 RAL-380 1542 chr3R 20506587 20506609 chr3R 20507390 20507412 BS 7 803 5.0 4.0 4.5 1.3 825 chr3R 20506587 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507412 3` UTR CG4288 - chr3R_7_20505001 chr3R_20505001 RAL-380 1543 chr3R 20596192 20596210 chr3R 20596279 20596297 9 87 0.0 2.0 1.0 4.5 105 chr3R 20596192 intron bon + chr3R 20596244 intron bon + chr3R 20596297 intron bon + chr3R_9_20595001 chr3R_20595001 RAL-380 1544 chr3R 20730928 20731061 chr3R 20731028 20731149 10 95 1.0 0.5 0.8 5.6 221 chr3R 20730928 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731149 intergenic CG31205 + chr3R_10_20730001 chr3R_20730001 RAL-380 1545 chr3R 20787446 20787458 chr3R 20787536 20787549 8 91 3.0 6.0 4.5 1.5 103 chr3R 20787446 intron Syp + chr3R 20787498 intron Syp + chr3R 20787549 intron Syp + chr3R_8_20785001 chr3R_20785001 RAL-380 1546 chr3R 20982289 20982328 chr3R 20982537 20982540 12 241 4.0 7.5 5.8 1.8 251 chr3R 20982289 intron Calx + chr3R 20982414 intron Calx + chr3R 20982540 intron Calx + chr3R_12_20980001 chr3R_20980001 RAL-380 1547 chr3R 21141699 21141705 chr3R 21150156 21150165 Tirant 4 8458 3.5 2.0 2.8 1.1 8466 chr3R 21141699 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150165 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-380 1548 chr3R 21163247 21163279 chr3R 21163325 21163339 10 76 2.5 2.0 2.2 3.1 92 chr3R 21163247 intron SNF4Agamma + chr3R 21163293 intron SNF4Agamma + chr3R 21163339 intron SNF4Agamma + chr3R_10_21160001 chr3R_21160001 RAL-380 1549 chr3R 21203701 21203727 chr3R 21203786 21203795 8 82 3.0 4.5 3.8 1.7 94 chr3R 21203701 intron SNF4Agamma + chr3R 21203748 intron SNF4Agamma + chr3R 21203795 intron SNF4Agamma + chr3R_8_21200001 chr3R_21200001 RAL-380 1550 chr3R 21408526 21408549 chr3R 21408603 21408626 5 76 5.5 2.0 3.8 1.0 100 chr3R 21408526 intergenic CheB93a + chr3R 21408576 intergenic CheB93a + chr3R 21408626 intergenic CheB93a +,CheB93b + chr3R_5_21405001 chr3R_21405001 RAL-380 1551 chr3R 21472015 21472035 chr3R 21472096 21472116 4 80 3.0 3.0 3.0 1.0 101 chr3R 21472015 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-380 1552 chr3R 21505223 21505248 chr3R 21505304 21505313 8 77 1.5 3.0 2.2 2.5 90 chr3R 21505223 intron C15 + chr3R 21505268 intron C15 + chr3R 21505313 intron C15 + chr3R_8_21505001 chr3R_21505001 RAL-380 1553 chr3R 21519988 21520136 chr3R 21520089 21520220 9 96 2.5 2.0 2.2 2.8 232 chr3R 21519988 intergenic not near genes chr3R 21520104 intergenic not near genes chr3R 21520220 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-380 1554 chr3R 21761120 21761151 chr3R 21768511 21768523 mdg1 9 7389 4.0 2.0 3.0 2.2 7403 chr3R 21761120 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768523 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-380 1555 chr3R 8339246 8339251 chr3R 21907534 21907534 4 13568286 16.5 25.5 21.0 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-380 1556 chr3R 17389054 17389054 chr3R 21907534 21907534 6 4518480 13.0 25.5 19.2 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-380 1557 chr3R 21907534 21907534 chr3R 28831801 28831802 19 6924268 26.0 19.0 22.5 0.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-380 1558 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568289 17.0 25.5 21.2 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-380 1559 chr3R 17389054 17389055 chr3R 21907535 21907535 6 4518481 13.5 25.5 19.5 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-380 1560 chr3R 19457915 19457919 chr3R 21907535 21907535 4 2449618 4.5 25.5 15.0 0.2 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-380 1561 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 5.5 25.5 15.5 0.2 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-380 1562 chr3R 21907535 21907535 chr3R 28831801 28831802 59 6924266 26.0 19.0 22.5 2.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_59_25365001 chr3R_25365001 RAL-380 1563 chr3R 21907535 21907535 chr3R 29013339 29013340 4 7105804 26.0 21.0 23.5 0.2 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-380 1564 chr3R 21907536 21907536 chr3R 28831801 28831802 30 6924266 26.5 19.0 22.8 1.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-380 1565 chr3R 21985234 21985260 chr3R 21985339 21985364 7 105 3.0 0.0 1.5 2.8 130 chr3R 21985234 intron Eip93F + chr3R 21985299 intron Eip93F + chr3R 21985364 intron Eip93F + chr3R_7_21985001 chr3R_21985001 RAL-380 1566 chr3R 22142216 22142228 chr3R 22142294 22142306 5 78 4.0 3.0 3.5 1.1 90 chr3R 22142216 5` UTR SKIP + chr3R 22142261 intron SKIP + chr3R 22142306 intron SKIP + chr3R_5_22140001 chr3R_22140001 RAL-380 1567 chr3R 22239489 22239516 chr3R 22248549 22248550 roo 8 9056 3.5 0.0 1.8 2.9 9061 chr3R 22239489 intron SKIP + chr3R 22244020 intron SKIP + chr3R 22248550 intron SKIP + chr3R_8_22240001 chr3R_22240001 RAL-380 1568 chr3R 22272349 22272370 chr3R 22272430 22272452 7 82 1.0 3.0 2.0 2.3 103 chr3R 22272349 intron SKIP + chr3R 22272400 intron SKIP + chr3R 22272452 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-380 1569 chr3R 22292474 22292501 chr3R 22292553 22292581 9 79 4.0 3.5 3.8 1.9 107 chr3R 22292474 intron SKIP + chr3R 22292528 intron SKIP + chr3R 22292581 intron SKIP + chr3R_9_22290001 chr3R_22290001 RAL-380 1570 chr3R 22428576 22428607 chr3R 22428652 22428683 4 70 4.0 2.0 3.0 1.0 107 chr3R 22428576 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-380 1571 chr3R 22450551 22450572 chr3R 22453180 22453194 NOF 5 2633 4.5 5.0 4.8 0.9 2643 chr3R 22450551 intron CG34376 + chr3R 22451872 intron CG34376 + chr3R 22453194 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-380 1572 chr3R 22507798 22507808 chr3R 22507882 22507888 4 81 2.5 5.5 4.0 0.8 90 chr3R 22507798 intron Octbeta1R + chr3R 22507843 intron Octbeta1R + chr3R 22507888 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-380 1573 chr3R 22538444 22538463 chr3R 22538527 22538548 6 85 2.5 1.5 2.0 2.0 104 chr3R 22538444 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538548 intron CG5326 - chr3R_6_22535001 chr3R_22535001 RAL-380 1574 chr3R 22538465 22538473 chr3R 22538526 22538533 5 75 1.0 0.5 0.8 2.8 68 chr3R 22538465 intron CG5326 - chr3R 22538499 intron CG5326 - chr3R 22538533 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-380 1575 chr3R 22769091 22769122 chr3R 22769166 22769199 10 73 5.0 2.5 3.8 2.1 108 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769145 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_10_22765001 chr3R_22765001 RAL-380 1576 chr3R 22797760 22797937 chr3R 22797846 22798033 26 90 0.0 0.0 0.0 26.0 273 chr3R 22797760 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_26_22795001 chr3R_22795001 RAL-380 1577 chr3R 22802903 22802912 chr3R 22802983 22802991 4 80 0.0 3.0 1.5 1.6 88 chr3R 22802903 intergenic not near genes chr3R 22802947 intergenic not near genes chr3R 22802991 intergenic not near genes chr3R_4_22800001 chr3R_22800001 RAL-380 1578 chr3R 22802916 22802934 chr3R 22802980 22803014 8 72 1.0 3.0 2.0 2.7 98 chr3R 22802916 intergenic not near genes chr3R 22802965 intergenic not near genes chr3R 22803014 intergenic not near genes chr3R_8_22800001 chr3R_22800001 RAL-380 1579 chr3R 22860151 22860173 chr3R 22860243 22860265 9 92 2.5 2.5 2.5 2.6 114 chr3R 22860151 intergenic not near genes chr3R 22860208 intergenic not near genes chr3R 22860265 intergenic not near genes chr3R_9_22860001 chr3R_22860001 RAL-380 1580 chr3R 22871432 22871454 chr3R 22871564 22871587 5 132 3.0 3.5 3.2 1.2 155 chr3R 22871432 intergenic not near genes chr3R 22871510 intergenic not near genes chr3R 22871587 intergenic not near genes chr3R_5_22870001 chr3R_22870001 RAL-380 1581 chr3R 22880938 22880960 chr3R 22881076 22881098 5 138 2.0 3.0 2.5 1.4 160 chr3R 22880938 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881098 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-380 1582 chr3R 22881190 22881214 chr3R 22884896 22884920 Doc 5 3706 6.0 1.0 3.5 1.1 3730 chr3R 22881190 intergenic not near genes chr3R 22883055 intergenic not near genes chr3R 22884920 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-380 1583 chr3R 22927868 22927904 chr3R 22927963 22927997 12 90 4.5 4.5 4.5 2.2 129 chr3R 22927868 intron klg + chr3R 22927932 intron klg + chr3R 22927997 intron klg + chr3R_12_22925001 chr3R_22925001 RAL-380 1584 chr3R 22946074 22946097 chr3R 22946881 22946884 5 803 2.0 6.0 4.0 1.0 810 chr3R 22946074 intron klg + chr3R 22946479 intron klg + chr3R 22946884 intron klg + chr3R_5_22945001 chr3R_22945001 RAL-380 1585 chr3R 22968662 22968691 chr3R 22968765 22968794 12 100 2.0 6.0 4.0 2.4 132 chr3R 22968662 intergenic not near genes chr3R 22968728 intergenic not near genes chr3R 22968794 intergenic not near genes chr3R_12_22965001 chr3R_22965001 RAL-380 1586 chr3R 23034821 23034848 chr3R 23035231 23035261 9 412 4.0 3.0 3.5 2.0 440 chr3R 23034821 intron CG13833 - chr3R 23035041 intron CG13833 - chr3R 23035261 intron CG13833 - chr3R_9_23035001 chr3R_23035001 RAL-380 1587 chr3R 23064173 23064202 chr3R 23064282 23064311 12 106 2.5 8.0 5.2 1.9 138 chr3R 23064173 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064311 exon CG17111 - chr3R_12_23060001 chr3R_23060001 RAL-380 1588 chr3R 23064875 23064890 chr3R 23064966 23064981 5 90 0.0 2.5 1.2 2.3 106 chr3R 23064875 intron CG17111 - chr3R 23064928 intron CG17111 - chr3R 23064981 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-380 1589 chr3R 23090408 23090436 chr3R 23090491 23090496 7 75 2.5 7.5 5.0 1.2 88 chr3R 23090408 intron CG13830 - chr3R 23090452 intron CG13830 - chr3R 23090496 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-380 1590 chr3R 23091261 23091285 chr3R 23091342 23091370 10 83 4.5 5.0 4.8 1.7 109 chr3R 23091261 intron CG13830 - chr3R 23091316 intron CG13830 - chr3R 23091370 intron CG13830 - chr3R_10_23090001 chr3R_23090001 RAL-380 1591 chr3R 23145160 23145192 chr3R 23145236 23145269 10 77 3.0 6.0 4.5 1.8 109 chr3R 23145160 intergenic not near genes chr3R 23145214 intergenic not near genes chr3R 23145269 intergenic not near genes chr3R_10_23145001 chr3R_23145001 RAL-380 1592 chr3R 23182494 23182521 chr3R 23182610 23182619 6 112 2.5 0.5 1.5 2.4 125 chr3R 23182494 intron Irk1 + chr3R 23182556 intron Irk1 + chr3R 23182619 intron Irk1 + chr3R_6_23180001 chr3R_23180001 RAL-380 1593 chr3R 23197963 23197980 chr3R 23198039 23198058 4 78 2.0 0.0 1.0 2.0 95 chr3R 23197963 exon cnc - chr3R 23198010 intron cnc - chr3R 23198058 intron cnc - chr3R_4_23195001 chr3R_23195001 RAL-380 1594 chr3R 23291259 23291283 chr3R 23291344 23291351 6 82 2.0 5.0 3.5 1.3 92 chr3R 23291259 3` UTR pnt - chr3R 23291305 3` UTR pnt - chr3R 23291351 3` UTR pnt - chr3R_6_23290001 chr3R_23290001 RAL-380 1595 chr3R 23311683 23311707 chr3R 23311772 23311800 6 91 3.0 3.0 3.0 1.5 117 chr3R 23311683 intron pnt - chr3R 23311742 intron pnt - chr3R 23311800 intron pnt - chr3R_6_23310001 chr3R_23310001 RAL-380 1596 chr3R 23360184 23360213 chr3R 23360260 23360289 9 76 0.5 2.5 1.5 3.6 105 chr3R 23360184 3` UTR RpS3 + chr3R 23360236 intergenic RpS3 + chr3R 23360289 intergenic RpS3 + chr3R_9_23360001 chr3R_23360001 RAL-380 1597 chr3R 23452974 23452981 chr3R 23453054 23453057 4 79 7.0 3.0 5.0 0.7 83 chr3R 23452974 intron CG4374 - chr3R 23453016 intron CG4374 - chr3R 23453057 intron CG4374 - chr3R_4_23450001 chr3R_23450001 RAL-380 1598 chr3R 23452982 23453000 chr3R 23453053 23453080 8 77 4.0 3.0 3.5 1.8 98 chr3R 23452982 intron CG4374 - chr3R 23453031 intron CG4374 - chr3R 23453080 intron CG4374 - chr3R_8_23450001 chr3R_23450001 RAL-380 1599 chr3R 23453682 23453713 chr3R 23453759 23453792 10 78 2.5 2.5 2.5 2.9 110 chr3R 23453682 intron CG4374 - chr3R 23453737 intron CG4374 - chr3R 23453792 intron CG4374 - chr3R_10_23450001 chr3R_23450001 RAL-380 1600 chr3R 23558398 23558424 chr3R 23560179 23560205 Bari1 9 1781 2.5 3.5 3.0 2.2 1807 chr3R 23558398 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560205 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-380 1601 chr3R 23574418 23574429 chr3R 23574956 23574967 4 536 1.0 3.5 2.2 1.2 549 chr3R 23574418 exon beat-IV + chr3R 23574692 intron beat-IV + chr3R 23574967 intron beat-IV + chr3R_4_23570001 chr3R_23570001 RAL-380 1602 chr3R 23626325 23626355 chr3R 23626423 23626454 15 95 6.5 6.0 6.2 2.1 129 chr3R 23626325 intron CG31145 - chr3R 23626390 intron CG31145 - chr3R 23626454 intron CG31145 - chr3R_15_23625001 chr3R_23625001 RAL-380 1603 chr3R 23629441 23629473 chr3R 23629517 23629549 11 73 6.0 9.5 7.8 1.2 108 chr3R 23629441 intron CG31145 - chr3R 23629495 intron CG31145 - chr3R 23629549 intron CG31145 - chr3R_11_23625001 chr3R_23625001 RAL-380 1604 chr3R 23678540 23678567 chr3R 23678855 23678883 18 314 14.0 18.5 16.2 1.0 343 chr3R 23678540 intergenic CG13822 +,CG10157 + chr3R 23678712 intergenic CG10157 +,CG13822 + chr3R 23678883 intergenic CG10157 +,CG13822 + chr3R_18_23675001 chr3R_23675001 RAL-380 1605 chr3R 23677812 23677819 chr3R 23684148 23684154 5 6335 51.0 34.5 42.8 0.1 6342 chr3R 23677812 intron CG13822 + chr3R 23680983 exon eIF-3p66 + chr3R 23684154 intron CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-380 1606 chr3R 23677811 23677838 chr3R 23684155 23684173 18 6337 85.0 32.0 58.5 0.3 6362 chr3R 23677811 intron CG13822 + chr3R 23680992 exon eIF-3p66 + chr3R 23684173 intron CG18754 + chr3R_18_23680001 chr3R_23680001 RAL-380 1607 chr3R 23684720 23684729 chr3R 23685183 23685197 roo 4 474 4.0 4.0 4.0 0.8 477 chr3R 23684720 intron CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685197 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-380 1608 chr3R 23795523 23795548 chr3R 23795606 23795632 9 84 2.0 7.0 4.5 1.6 109 chr3R 23795523 intron mbc + chr3R 23795578 intron mbc + chr3R 23795632 intron mbc + chr3R_9_23795001 chr3R_23795001 RAL-380 1609 chr3R 23835419 23835436 chr3R 23844569 23844586 roo 6 9150 2.5 3.0 2.8 1.6 9167 chr3R 23835419 intron CG34355 + chr3R 23840002 intron CG34355 + chr3R 23844586 intron CG34355 + chr3R_6_23840001 chr3R_23840001 RAL-380 1610 chr3R 23859047 23859070 chr3R 23859136 23859163 7 92 3.0 1.0 2.0 2.3 116 chr3R 23859047 intergenic not near genes chr3R 23859105 intergenic not near genes chr3R 23859163 intergenic not near genes chr3R_7_23855001 chr3R_23855001 RAL-380 1611 chr3R 23877454 23877486 chr3R 23877700 23877731 7 246 2.0 2.0 2.0 2.3 277 chr3R 23877454 intron Pli - chr3R 23877592 intron Pli - chr3R 23877731 intron Pli - chr3R_7_23875001 chr3R_23875001 RAL-380 1612 chr3R 23893792 23893800 chr3R 23893896 23893904 5 103 5.0 6.0 5.5 0.8 112 chr3R 23893792 intergenic sba -,tbrd-1 - chr3R 23893848 intergenic sba -,tbrd-1 - chr3R 23893904 intergenic sba - chr3R_5_23890001 chr3R_23890001 RAL-380 1613 chr3R 23893801 23893812 chr3R 23893891 23893916 8 100 2.0 4.0 3.0 2.0 115 chr3R 23893801 intergenic sba -,tbrd-1 - chr3R 23893858 intergenic sba -,tbrd-1 - chr3R 23893916 intergenic sba - chr3R_8_23890001 chr3R_23890001 RAL-380 1614 chr3R 23941255 23941289 chr3R 23941331 23941363 12 76 2.5 3.5 3.0 3.0 108 chr3R 23941255 intron Gdh - chr3R 23941309 intron Gdh - chr3R 23941363 intron Gdh - chr3R_12_23940001 chr3R_23940001 RAL-380 1615 chr3R 23944917 23944935 chr3R 23945001 23945018 9 84 2.5 4.5 3.5 2.0 101 chr3R 23944917 intron CG12268 - chr3R 23944968 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-380 1616 chr3R 24011674 24011680 chr3R 24011757 24011763 4 83 0.5 5.5 3.0 1.0 89 chr3R 24011674 intron KrT95D - chr3R 24011718 intron KrT95D - chr3R 24011763 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-380 1617 chr3R 24015425 24015451 chr3R 24015502 24015528 8 77 0.0 3.5 1.8 2.9 103 chr3R 24015425 intron KrT95D - chr3R 24015476 intron KrT95D - chr3R 24015528 intron KrT95D - chr3R_8_24015001 chr3R_24015001 RAL-380 1618 chr3R 24021634 24021640 chr3R 24021720 24021730 4 89 5.0 3.5 4.2 0.8 96 chr3R 24021634 intron KrT95D - chr3R 24021682 intron KrT95D - chr3R 24021730 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-380 1619 chr3R 24072083 24072118 chr3R 24072521 24072530 jockey 12 433 6.0 0.0 3.0 3.0 447 chr3R 24072083 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072530 intron 4EHP - chr3R_12_24070001 chr3R_24070001 RAL-380 1620 chr3R 24076918 24076948 chr3R 24078385 24078415 hobo 16 1466 5.0 5.0 5.0 2.7 1497 chr3R 24076918 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_16_24075001 chr3R_24075001 RAL-380 1621 chr3R 24207228 24207242 chr3R 24212306 24212320 flea 6 5077 4.5 6.5 5.5 0.9 5092 chr3R 24207228 intron twin - chr3R 24209774 intron twin - chr3R 24212320 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-380 1622 chr3R 24279242 24279274 chr3R 24279529 24279559 INE-1 4 286 1.5 4.0 2.8 1.1 317 chr3R 24279242 intergenic CG13611 +,Orct + chr3R 24279400 intergenic CG13611 + chr3R 24279559 intergenic CG13611 + chr3R_4_24275001 chr3R_24275001 RAL-380 1623 chr3R 24366436 24366469 chr3R 24366947 24366980 13 514 52.5 63.0 57.8 0.2 544 chr3R 24366436 intergenic CG13613 +,CG42811 - chr3R 24366708 intron CG42811 - chr3R 24366980 exon CG42811 - chr3R_13_24365001 chr3R_24365001 RAL-380 1624 chr3R 24366341 24366375 chr3R 24369505 24369540 7 3165 26.0 26.5 26.2 0.3 3199 chr3R 24366341 exon CG13613 + chr3R 24367940 exon CG42812 - chr3R 24369540 intergenic CG13614 +,CG33341 + chr3R_7_24365001 chr3R_24365001 RAL-380 1625 chr3R 24426289 24426308 chr3R 24426546 24426548 6 254 4.0 5.0 4.5 1.1 259 chr3R 24426289 intron nAChRalpha1 - chr3R 24426418 intron nAChRalpha1 - chr3R 24426548 intron nAChRalpha1 - chr3R_6_24425001 chr3R_24425001 RAL-380 1626 chr3R 24431602 24431619 chr3R 24431681 24431697 4 79 4.5 2.0 3.2 1.0 95 chr3R 24431602 intron nAChRalpha1 - chr3R 24431650 intron nAChRalpha1 - chr3R 24431697 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-380 1627 chr3R 24466463 24466496 chr3R 24466541 24466574 7 78 1.5 3.5 2.5 2.0 111 chr3R 24466463 intergenic not near genes chr3R 24466518 intergenic not near genes chr3R 24466574 intergenic not near genes chr3R_7_24465001 chr3R_24465001 RAL-380 1628 chr3R 24493277 24493310 chr3R 24493506 24493539 BS 9 227 2.5 4.5 3.5 2.0 262 chr3R 24493277 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_9_24490001 chr3R_24490001 RAL-380 1629 chr3R 24605547 24605556 chr3R 24605647 24605656 4 100 8.0 15.0 11.5 0.3 109 chr3R 24605547 intron mld + chr3R 24605602 intron mld + chr3R 24605656 intron mld + chr3R_4_24605001 chr3R_24605001 RAL-380 1630 chr3R 24625456 24625486 chr3R 24626951 24626981 8 1496 32.0 28.0 30.0 0.3 1525 chr3R 24625456 exon Syx18 - chr3R 24626218 intron atl + chr3R 24626981 intron atl + chr3R_8_24625001 chr3R_24625001 RAL-380 1631 chr3R 24730102 24730119 chr3R 24732480 24732497 Doc 4 2377 3.0 0.0 1.5 1.6 2395 chr3R 24730102 intron tok + chr3R 24731300 intron tok + chr3R 24732497 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-380 1632 chr3R 24789985 24790006 chr3R 24790130 24790146 7 142 4.5 4.5 4.5 1.3 161 chr3R 24789985 intron,5` UTR Ets96B +,CG13634 - chr3R 24790066 intron,5` UTR Ets96B +,CG13634 - chr3R 24790146 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-380 1633 chr3R 24927137 24927164 chr3R 24931914 24931924 Doc 7 4783 4.0 2.5 3.2 1.7 4787 chr3R 24927137 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931924 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-380 1634 chr3R 25004900 25004911 chr3R 25004983 25004994 7 83 0.5 3.0 1.8 2.5 94 chr3R 25004900 intron tnc + chr3R 25004947 intron tnc + chr3R 25004994 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-380 1635 chr3R 25093145 25093165 chr3R 25093393 25093412 5 248 3.0 4.0 3.5 1.1 267 chr3R 25093145 intergenic not near genes chr3R 25093278 intergenic not near genes chr3R 25093412 intergenic not near genes chr3R_5_25090001 chr3R_25090001 RAL-380 1636 chr3R 25268042 25268067 chr3R 25272650 25272656 5 4597 12.0 15.5 13.8 0.3 4614 chr3R 25268042 intron CR45214 - chr3R 25270349 exon,5` UTR CG11889 +,CG11891 + chr3R 25272656 3` UTR,exon CG11889 +,CG11891 + chr3R_5_25270001 chr3R_25270001 RAL-380 1637 chr3R 25334442 25334462 chr3R 25334552 25334577 6 112 4.0 7.0 5.5 0.9 135 chr3R 25334442 intron CG10669 - chr3R 25334510 exon CG10669 - chr3R 25334577 exon CG10669 - chr3R_6_25330001 chr3R_25330001 RAL-380 1638 chr3R 25368493 25368504 chr3R 25368611 25368622 4 118 4.0 0.0 2.0 1.3 129 chr3R 25368493 intron Fur1 - chr3R 25368558 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-380 1639 chr3R 25512392 25512420 chr3R 25512471 25512498 16 78 4.0 5.0 4.5 2.9 106 chr3R 25512392 intergenic not near genes chr3R 25512445 intergenic not near genes chr3R 25512498 intergenic not near genes chr3R_16_25510001 chr3R_25510001 RAL-380 1640 chr3R 25652316 25652346 chr3R 25652392 25652421 13 76 3.5 3.5 3.5 2.9 105 chr3R 25652316 intergenic not near genes chr3R 25652368 intergenic not near genes chr3R 25652421 intergenic not near genes chr3R_13_25650001 chr3R_25650001 RAL-380 1641 chr3R 25696323 25696337 chr3R 25696405 25696422 6 84 5.0 9.5 7.2 0.7 99 chr3R 25696323 intergenic not near genes chr3R 25696372 intergenic not near genes chr3R 25696422 intergenic not near genes chr3R_6_25695001 chr3R_25695001 RAL-380 1642 chr3R 25696338 25696344 chr3R 25696404 25696412 5 74 4.5 9.0 6.8 0.6 74 chr3R 25696338 intergenic not near genes chr3R 25696375 intergenic not near genes chr3R 25696412 intergenic not near genes chr3R_5_25695001 chr3R_25695001 RAL-380 1643 chr3R 25725832 25725855 chr3R 25734992 25735004 roo 4 9157 4.0 4.0 4.0 0.8 9172 chr3R 25725832 intron LpR2 - chr3R 25730418 intron LpR2 - chr3R 25735004 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-380 1644 chr3R 25796383 25796408 chr3R 25796460 25796478 4 75 5.5 0.0 2.8 1.1 95 chr3R 25796383 intergenic CR43847 - chr3R 25796430 intergenic CR43847 - chr3R 25796478 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-380 1645 chr3R 25832692 25832709 chr3R 25841874 25841891 roo 8 9182 5.5 4.5 5.0 1.3 9199 chr3R 25832692 exon alpha4GT2 + chr3R 25837292 intron alpha4GT2 + chr3R 25841891 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-380 1646 chr3R 25905642 25905657 chr3R 25905745 25905760 5 103 2.5 1.0 1.8 1.8 118 chr3R 25905642 intron CR43259 - chr3R 25905701 intron CR43259 - chr3R 25905760 intron CR43259 - chr3R_5_25905001 chr3R_25905001 RAL-380 1647 chr3R 25927505 25927522 chr3R 25927587 25927604 4 82 3.5 1.0 2.2 1.2 99 chr3R 25927505 intron CCAP-R - chr3R 25927554 intron CCAP-R - chr3R 25927604 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-380 1648 chr3R 25962051 25962082 chr3R 25962147 25962178 9 94 1.5 4.0 2.8 2.4 127 chr3R 25962051 intron boss + chr3R 25962114 intron boss + chr3R 25962178 intron boss + chr3R_9_25960001 chr3R_25960001 RAL-380 1649 chr3R 26038980 26038996 chr3R 26039107 26039130 6 134 2.0 2.5 2.2 1.9 150 chr3R 26038980 intergenic not near genes chr3R 26039055 intergenic not near genes chr3R 26039130 intergenic not near genes chr3R_6_26035001 chr3R_26035001 RAL-380 1650 chr3R 26066359 26066392 chr3R 26066442 26066477 10 84 3.5 3.0 3.2 2.4 118 chr3R 26066359 intergenic not near genes chr3R 26066418 intergenic not near genes chr3R 26066477 intergenic not near genes chr3R_10_26065001 chr3R_26065001 RAL-380 1651 chr3R 26093843 26093875 chr3R 26093921 26093953 9 77 1.0 4.5 2.8 2.4 110 chr3R 26093843 intron dys - chr3R 26093898 intron dys - chr3R 26093953 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-380 1652 chr3R 26122464 26122478 chr3R 26122538 26122554 6 75 2.5 6.0 4.2 1.2 90 chr3R 26122464 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122554 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-380 1653 chr3R 26140519 26140544 chr3R 26140632 26140648 12 109 3.0 5.0 4.0 2.4 129 chr3R 26140519 intergenic not near genes chr3R 26140584 intergenic not near genes chr3R 26140648 intergenic not near genes chr3R_12_26140001 chr3R_26140001 RAL-380 1654 chr3R 26235492 26235519 chr3R 26235574 26235586 4 72 2.0 3.5 2.8 1.1 94 chr3R 26235492 5` UTR CR42745 + chr3R 26235539 5` UTR CR42745 + chr3R 26235586 5` UTR CR42745 + chr3R_4_26235001 chr3R_26235001 RAL-380 1655 chr3R 26245036 26245055 chr3R 26245235 26245254 8 199 7.0 1.5 4.2 1.5 218 chr3R 26245036 intron CR42745 + chr3R 26245145 intron CR42745 + chr3R 26245254 intron CR42745 + chr3R_8_26245001 chr3R_26245001 RAL-380 1656 chr3R 26247257 26247284 chr3R 26247391 26247414 11 133 2.5 2.5 2.5 3.1 157 chr3R 26247257 intron CR42745 + chr3R 26247336 intron CR42745 + chr3R 26247414 intron CR42745 + chr3R_11_26245001 chr3R_26245001 RAL-380 1657 chr3R 26253265 26253293 chr3R 26253706 26253738 6 440 8.5 5.5 7.0 0.8 473 chr3R 26253265 intergenic CR42745 + chr3R 26253502 intergenic not near genes chr3R 26253738 intergenic Ald - chr3R_6_26250001 chr3R_26250001 RAL-380 1658 chr3R 26266904 26266914 chr3R 26267009 26267019 4 104 3.5 5.5 4.5 0.7 115 chr3R 26266904 intron CG6154 + chr3R 26266962 intron CG6154 + chr3R 26267019 intron CG6154 + chr3R_4_26265001 chr3R_26265001 RAL-380 1659 chr3R 26292107 26292139 chr3R 26292187 26292219 9 80 0.5 3.0 1.8 3.2 112 chr3R 26292107 intergenic not near genes chr3R 26292163 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-380 1660 chr3R 26313549 26313565 chr3R 26313644 26313659 7 93 1.0 2.5 1.8 2.5 110 chr3R 26313549 intergenic not near genes chr3R 26313604 intergenic not near genes chr3R 26313659 intergenic not near genes chr3R_7_26310001 chr3R_26310001 RAL-380 1661 chr3R 26376326 26376351 chr3R 26385485 26385508 roo 8 9158 4.0 0.0 2.0 2.7 9182 chr3R 26376326 intergenic not near genes chr3R 26380917 intergenic not near genes chr3R 26385508 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-380 1662 chr3R 26405919 26405934 chr3R 26405995 26406010 5 76 3.5 1.0 2.2 1.6 91 chr3R 26405919 intergenic not near genes chr3R 26405964 intergenic not near genes chr3R 26406010 intergenic not near genes chr3R_5_26405001 chr3R_26405001 RAL-380 1663 chr3R 26444357 26444377 chr3R 26444435 26444453 8 77 2.5 3.0 2.8 2.1 96 chr3R 26444357 intron tx + chr3R 26444405 intron tx + chr3R 26444453 intron tx + chr3R_8_26440001 chr3R_26440001 RAL-380 1664 chr3R 26458212 26458216 chr3R 26458297 26458301 4 85 13.0 1.0 7.0 0.5 89 chr3R 26458212 intergenic CG14238 + chr3R 26458256 5` UTR CG14238 + chr3R 26458301 5` UTR CG14238 + chr3R_4_26455001 chr3R_26455001 RAL-380 1665 chr3R 26489148 26489163 chr3R 26489209 26489242 7 72 3.5 4.5 4.0 1.4 94 chr3R 26489148 intron plum - chr3R 26489195 intron plum - chr3R 26489242 intron plum - chr3R_7_26485001 chr3R_26485001 RAL-380 1666 chr3R 26510503 26510534 chr3R 26519564 26519589 roo 5 9056 2.5 1.5 2.0 1.7 9086 chr3R 26510503 intron plum - chr3R 26515046 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-380 1667 chr3R 26541016 26541031 chr3R 26541094 26541110 5 77 0.0 4.0 2.0 1.7 94 chr3R 26541016 intron scrib + chr3R 26541063 intron scrib + chr3R 26541110 intron scrib + chr3R_5_26540001 chr3R_26540001 RAL-380 1668 chr3R 26558326 26558361 chr3R 26565637 26565671 Stalker4 7 7309 2.0 3.0 2.5 2.0 7345 chr3R 26558326 intron scrib + chr3R 26561998 intron scrib + chr3R 26565671 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-380 1669 chr3R 26575012 26575038 chr3R 26575091 26575115 8 76 2.0 3.5 2.8 2.1 103 chr3R 26575012 exon scrib + chr3R 26575064 intron scrib + chr3R 26575115 intron scrib + chr3R_8_26575001 chr3R_26575001 RAL-380 1670 chr3R 26642729 26642756 chr3R 26643122 26643149 jockey 9 391 5.5 2.0 3.8 1.9 420 chr3R 26642729 intergenic not near genes chr3R 26642939 intergenic not near genes chr3R 26643149 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-380 1671 chr3R 26660437 26660461 chr3R 26660520 26660538 12 81 8.0 5.5 6.8 1.5 101 chr3R 26660437 intron beat-VII - chr3R 26660488 intron beat-VII - chr3R 26660538 intron beat-VII - chr3R_12_26660001 chr3R_26660001 RAL-380 1672 chr3R 26703267 26703287 chr3R 26703364 26703384 4 96 5.0 0.5 2.8 1.1 117 chr3R 26703267 intron amon - chr3R 26703326 intron amon - chr3R 26703384 intron amon - chr3R_4_26700001 chr3R_26700001 RAL-380 1673 chr3R 26710829 26710837 chr3R 26710913 26710915 6 83 5.5 2.5 4.0 1.2 86 chr3R 26710829 intron amon - chr3R 26710872 intron amon - chr3R 26710915 intron amon - chr3R_6_26710001 chr3R_26710001 RAL-380 1674 chr3R 26710843 26710855 chr3R 26710912 26710939 8 78 3.5 2.5 3.0 2.0 96 chr3R 26710843 intron amon - chr3R 26710891 intron amon - chr3R 26710939 intron amon - chr3R_8_26710001 chr3R_26710001 RAL-380 1675 chr3R 26810553 26810586 chr3R 26811038 26811071 roo 9 483 4.0 4.0 4.0 1.8 518 chr3R 26810553 intron Tl + chr3R 26810812 intron Tl + chr3R 26811071 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-380 1676 chr3R 26845352 26845362 chr3R 26845444 26845452 5 91 5.5 7.5 6.5 0.7 100 chr3R 26845352 intron Lerp - chr3R 26845402 intron Lerp - chr3R 26845452 intron Lerp - chr3R_5_26845001 chr3R_26845001 RAL-380 1677 chr3R 26845364 26845378 chr3R 26845439 26845467 6 88 3.0 6.0 4.5 1.1 103 chr3R 26845364 intron Lerp - chr3R 26845416 intron Lerp - chr3R 26845467 intron Lerp - chr3R_6_26845001 chr3R_26845001 RAL-380 1678 chr3R 26870792 26870821 chr3R 26870870 26870899 8 78 4.5 3.0 3.8 1.7 107 chr3R 26870792 intron BM-40-SPARC - chr3R 26870846 intron BM-40-SPARC - chr3R 26870899 intron BM-40-SPARC - chr3R_8_26870001 chr3R_26870001 RAL-380 1679 chr3R 27007403 27007437 chr3R 27016538 27016572 roo 8 9133 2.0 2.5 2.2 2.5 9169 chr3R 27007403 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016572 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-380 1680 chr3R 27028726 27028755 chr3R 27028805 27028834 12 78 1.0 2.5 1.8 4.3 108 chr3R 27028726 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028834 intron RYa-R + chr3R_12_27025001 chr3R_27025001 RAL-380 1681 chr3R 27030222 27030251 chr3R 27030351 27030380 11 129 4.5 1.5 3.0 2.8 158 chr3R 27030222 intron RYa-R + chr3R 27030301 intron RYa-R + chr3R 27030380 intron RYa-R + chr3R_11_27030001 chr3R_27030001 RAL-380 1682 chr3R 27140513 27140547 chr3R 27148123 27148157 412 8 7608 4.0 4.0 4.0 1.6 7644 chr3R 27140513 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-380 1683 chr3R 27315994 27316010 chr3R 27316070 27316080 7 75 5.5 5.0 5.2 1.1 86 chr3R 27315994 intron CG3339 - chr3R 27316037 intron CG3339 - chr3R 27316080 intron CG3339 - chr3R_7_27315001 chr3R_27315001 RAL-380 1684 chr3R 27342791 27342821 chr3R 27351372 27351402 Tirant 13 8580 0.5 2.5 1.5 5.2 8611 chr3R 27342791 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351402 intron CG42534 + chr3R_13_27345001 chr3R_27345001 RAL-380 1685 chr3R 27354820 27354848 chr3R 27355210 27355238 6 383 2.0 2.5 2.2 1.9 418 chr3R 27354820 intron CG42534 + chr3R 27355029 intron CG42534 + chr3R 27355238 intron CG42534 + chr3R_6_27355001 chr3R_27355001 RAL-380 1686 chr3R 27377482 27377502 chr3R 27377565 27377589 6 87 2.0 3.0 2.5 1.7 107 chr3R 27377482 3` UTR side - chr3R 27377536 3` UTR side - chr3R 27377589 3` UTR side - chr3R_6_27375001 chr3R_27375001 RAL-380 1687 chr3R 27457867 27457898 chr3R 27457959 27457962 5 86 2.5 0.5 1.5 2.0 95 chr3R 27457867 intergenic not near genes chr3R 27457914 intergenic not near genes chr3R 27457962 intergenic not near genes chr3R_5_27455001 chr3R_27455001 RAL-380 1688 chr3R 27492386 27492410 chr3R 27492473 27492497 4 86 4.0 2.0 3.0 1.0 111 chr3R 27492386 intergenic not near genes chr3R 27492442 intergenic not near genes chr3R 27492497 intergenic not near genes chr3R_4_27490001 chr3R_27490001 RAL-380 1689 chr3R 27496591 27496604 chr3R 27496696 27496708 5 103 3.0 2.0 2.5 1.4 117 chr3R 27496591 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496708 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-380 1690 chr3R 27521161 27521188 chr3R 27530370 27530397 roo 4 9209 1.5 1.5 1.5 1.6 9236 chr3R 27521161 intron CG12885 + chr3R 27525779 intron CG12885 + chr3R 27530397 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-380 1691 chr3R 27578496 27578511 chr3R 27578571 27578601 10 79 9.0 5.5 7.2 1.2 105 chr3R 27578496 intron wdb - chr3R 27578548 intron wdb - chr3R 27578601 intron wdb - chr3R_10_27575001 chr3R_27575001 RAL-380 1692 chr3R 27705364 27705391 chr3R 27705439 27705445 6 74 3.0 4.5 3.8 1.2 81 chr3R 27705364 exon CG12428 - chr3R 27705404 intron CG12428 - chr3R 27705445 intron CG12428 - chr3R_6_27705001 chr3R_27705001 RAL-380 1693 chr3R 27706778 27706806 chr3R 27706853 27706882 5 76 2.0 2.5 2.2 1.6 104 chr3R 27706778 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706882 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-380 1694 chr3R 27725566 27725595 chr3R 27731008 27731037 I-element 10 5441 5.5 2.0 3.8 2.1 5471 chr3R 27725566 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731037 intergenic not near genes chr3R_10_27725001 chr3R_27725001 RAL-380 1695 chr3R 27856763 27856791 chr3R 27858246 27858271 hopper2 11 1481 2.5 1.5 2.0 3.7 1508 chr3R 27856763 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_11_27855001 chr3R_27855001 RAL-380 1696 chr3R 27862953 27862983 chr3R 27868258 27868288 Transpac 5 5302 3.5 1.5 2.5 1.4 5335 chr3R 27862953 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-380 1697 chr3R 27869736 27869773 chr3R 27869833 27869837 16 92 4.5 4.5 4.5 2.9 101 chr3R 27869736 intron CG34353 - chr3R 27869786 intron CG34353 - chr3R 27869837 intron CG34353 - chr3R_16_27865001 chr3R_27865001 RAL-380 1698 chr3R 27875699 27875730 chr3R 27882753 27882785 297 14 7053 3.5 3.0 3.2 3.3 7086 chr3R 27875699 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_14_27875001 chr3R_27875001 RAL-380 1699 chr3R 28017947 28017974 chr3R 28018038 28018062 5 90 5.5 3.0 4.2 1.0 115 chr3R 28017947 intergenic not near genes chr3R 28018004 intergenic not near genes chr3R 28018062 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-380 1700 chr3R 28068496 28068530 chr3R 28073938 28073972 I-element 9 5435 2.5 1.0 1.8 3.2 5476 chr3R 28068496 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073972 intron CG34362 + chr3R_9_28070001 chr3R_28070001 RAL-380 1701 chr3R 28082235 28082269 chr3R 28082316 28082349 9 79 3.0 3.0 3.0 2.2 114 chr3R 28082235 intron CG34362 + chr3R 28082292 intron CG34362 + chr3R 28082349 intron CG34362 + chr3R_9_28080001 chr3R_28080001 RAL-380 1702 chr3R 28115520 28115544 chr3R 28115596 28115620 7 76 1.0 2.5 1.8 2.5 100 chr3R 28115520 intergenic not near genes chr3R 28115570 intergenic not near genes chr3R 28115620 intergenic not near genes chr3R_7_28115001 chr3R_28115001 RAL-380 1703 chr3R 28173669 28173705 chr3R 28181099 28181104 mdg1 7 7421 3.0 0.5 1.8 2.5 7435 chr3R 28173669 intron CG34354 + chr3R 28177386 intron CG34354 + chr3R 28181104 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-380 1704 chr3R 28223254 28223288 chr3R 28223340 28223374 6 86 2.0 1.0 1.5 2.4 120 chr3R 28223254 intron CG34354 + chr3R 28223314 intron CG34354 + chr3R 28223374 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-380 1705 chr3R 28234511 28234531 chr3R 28234595 28234607 5 82 2.0 0.5 1.2 2.3 96 chr3R 28234511 intron CG34354 + chr3R 28234559 intron CG34354 + chr3R 28234607 intron CG34354 + chr3R_5_28230001 chr3R_28230001 RAL-380 1706 chr3R 28253354 28253373 chr3R 28255850 28255883 jockey 10 2504 3.0 3.5 3.2 2.4 2529 chr3R 28253354 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_10_28250001 chr3R_28250001 RAL-380 1707 chr3R 28282990 28283004 chr3R 28283619 28283633 10 628 7.0 5.0 6.0 1.4 643 chr3R 28282990 exon CG34436 + chr3R 28283312 exon CG34436 + chr3R 28283633 intergenic CG34436 +,CG34437 + chr3R_10_28280001 chr3R_28280001 RAL-380 1708 chr3R 28283005 28283017 chr3R 28283613 28283646 9 626 3.5 3.5 3.5 2.0 641 chr3R 28283005 exon CG34436 + chr3R 28283326 exon CG34436 + chr3R 28283646 intergenic CG34437 +,CG34436 + chr3R_9_28280001 chr3R_28280001 RAL-380 1709 chr3R 28345655 28345666 chr3R 28345731 28345742 7 76 4.5 1.0 2.8 1.8 87 chr3R 28345655 intergenic Moca-cyp + chr3R 28345698 intergenic not near genes chr3R 28345742 intergenic not near genes chr3R_7_28345001 chr3R_28345001 RAL-380 1710 chr3R 28429462 28429485 chr3R 28429536 28429570 8 77 6.5 5.0 5.8 1.2 108 chr3R 28429462 intron beat-VI + chr3R 28429516 intron beat-VI + chr3R 28429570 intron beat-VI + chr3R_8_28425001 chr3R_28425001 RAL-380 1711 chr3R 28565956 28565976 chr3R 28566034 28566052 6 77 3.5 7.0 5.2 1.0 96 chr3R 28565956 intergenic not near genes chr3R 28566004 intergenic not near genes chr3R 28566052 intergenic not near genes chr3R_6_28565001 chr3R_28565001 RAL-380 1712 chr3R 28640557 28640564 chr3R 28640641 28640648 5 84 7.0 3.5 5.2 0.8 91 chr3R 28640557 intergenic not near genes chr3R 28640602 intergenic not near genes chr3R 28640648 intergenic not near genes chr3R_5_28640001 chr3R_28640001 RAL-380 1713 chr3R 28640565 28640576 chr3R 28640635 28640660 8 79 5.0 2.5 3.8 1.7 95 chr3R 28640565 intergenic not near genes chr3R 28640612 intergenic not near genes chr3R 28640660 intergenic not near genes chr3R_8_28640001 chr3R_28640001 RAL-380 1714 chr3R 28675119 28675151 chr3R 28675227 28675259 10 104 3.0 4.0 3.5 2.2 140 chr3R 28675119 5` UTR CG9990 + chr3R 28675189 5` UTR CG9990 + chr3R 28675259 5` UTR CG9990 + chr3R_10_28675001 chr3R_28675001 RAL-380 1715 chr3R 28792872 28792902 chr3R 28797964 28797997 jockey 12 5088 1.5 4.0 2.8 3.2 5125 chr3R 28792872 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_12_28795001 chr3R_28795001 RAL-380 1716 chr3R 21907534 21907536 chr3R 28831801 28831802 68 6924266 26.5 19.0 22.8 2.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-380 1717 chr3R 28989918 28989929 chr3R 28990093 28990103 4 174 3.0 5.5 4.2 0.8 185 chr3R 28989918 intergenic not near genes chr3R 28990010 intergenic not near genes chr3R 28990103 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-380 1718 chr3R 28998987 28999021 chr3R 28999078 28999113 10 91 1.5 1.5 1.5 4.0 126 chr3R 28998987 intron wat - chr3R 28999050 intron wat - chr3R 28999113 intron wat - chr3R_10_28995001 chr3R_28995001 RAL-380 1719 chr3R 29009955 29009987 chr3R 29010061 29010092 11 105 2.5 2.0 2.2 3.4 137 chr3R 29009955 intron wat - chr3R 29010024 intron wat - chr3R 29010092 intron wat - chr3R_11_29010001 chr3R_29010001 RAL-380 1720 chr3R 21907534 21907535 chr3R 29013340 29013340 5 7105806 26.0 21.5 23.8 0.2 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-380 1721 chr3R 29070058 29070077 chr3R 29070139 29070158 4 81 1.5 1.5 1.5 1.6 100 chr3R 29070058 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070158 intron CG11873 + chr3R_4_29070001 chr3R_29070001 RAL-380 1722 chr3R 29079381 29079407 chr3R 29080753 29080779 NOF 10 1372 5.0 4.0 4.5 1.8 1398 chr3R 29079381 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080779 intron CG11873 + chr3R_10_29080001 chr3R_29080001 RAL-380 1723 chr3R 29213061 29213093 chr3R 29213144 29213176 10 82 2.0 5.5 3.8 2.1 115 chr3R 29213061 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213176 intergenic not near genes chr3R_10_29210001 chr3R_29210001 RAL-380 1724 chr3R 29236812 29236971 chr3R 29247123 29247247 4 10293 23.0 27.0 25.0 0.2 10435 chr3R 29236812 exon CG11951 - chr3R 29242030 exon CG31445 - chr3R 29247247 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-380 1725 chr3R 29237264 29237285 chr3R 29239273 29239303 9 2017 16.5 5.5 11.0 0.8 2039 chr3R 29237264 exon CG11951 - chr3R 29238284 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-380 1726 chr3R 29238779 29238791 chr3R 29238891 29238905 4 113 2.5 6.0 4.2 0.8 126 chr3R 29238779 intergenic CG31427 -,CG11951 - chr3R 29238842 3` UTR CG31427 - chr3R 29238905 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-380 1727 chr3R 29239226 29239249 chr3R 29245517 29245535 9 6289 6.5 18.5 12.5 0.7 6309 chr3R 29239226 exon CG31427 - chr3R 29242380 exon CG31445 - chr3R 29245535 exon SP1029 - chr3R_9_29240001 chr3R_29240001 RAL-380 1728 chr3R 29264194 29264213 chr3R 29264292 29264315 6 101 0.0 3.0 1.5 2.4 121 chr3R 29264194 intergenic not near genes chr3R 29264254 intergenic not near genes chr3R 29264315 intergenic not near genes chr3R_6_29260001 chr3R_29260001 RAL-380 1729 chr3R 29319828 29319858 chr3R 29320147 29320177 jockey 8 319 0.5 4.5 2.5 2.3 349 chr3R 29319828 intergenic Cnx99A - chr3R 29320002 intergenic Cnx99A - chr3R 29320177 intergenic not near genes chr3R_8_29320001 chr3R_29320001 RAL-380 1730 chr3R 29332285 29332309 chr3R 29332359 29332385 9 77 3.0 1.5 2.2 2.8 100 chr3R 29332285 intergenic not near genes chr3R 29332335 intergenic not near genes chr3R 29332385 intergenic not near genes chr3R_9_29330001 chr3R_29330001 RAL-380 1731 chr3R 29406635 29406648 chr3R 29407894 29407920 jockey 6 1273 4.5 4.5 4.5 1.1 1285 chr3R 29406635 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407920 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-380 1732 chr3R 29448680 29448700 chr3R 29448935 29448954 9 255 4.0 1.0 2.5 2.6 274 chr3R 29448680 intron Ptp99A + chr3R 29448817 intron Ptp99A + chr3R 29448954 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-380 1733 chr3R 29449366 29449391 chr3R 29449442 29449469 12 76 3.0 4.5 3.8 2.5 103 chr3R 29449366 intron Ptp99A + chr3R 29449418 intron Ptp99A + chr3R 29449469 intron Ptp99A + chr3R_12_29445001 chr3R_29445001 RAL-380 1734 chr3R 29472014 29472036 chr3R 29472105 29472127 8 91 3.0 3.0 3.0 2.0 113 chr3R 29472014 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_8_29470001 chr3R_29470001 RAL-380 1735 chr3R 29489233 29489256 chr3R 29489360 29489383 6 127 4.0 1.5 2.8 1.6 150 chr3R 29489233 5` UTR CG2321 - chr3R 29489308 intergenic CG2321 -,CG2006 + chr3R 29489383 intergenic CG2006 +,CG2321 - chr3R_6_29485001 chr3R_29485001 RAL-380 1736 chr3R 29539437 29539460 chr3R 29539513 29539535 5 76 2.5 0.0 1.2 2.3 98 chr3R 29539437 intergenic not near genes chr3R 29539486 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-380 1737 chr3R 29575840 29575848 chr3R 29575923 29575931 4 83 2.5 0.5 1.5 1.6 91 chr3R 29575840 intergenic not near genes chr3R 29575886 intergenic not near genes chr3R 29575931 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-380 1738 chr3R 29606084 29606118 chr3R 29606191 29606223 12 102 2.0 3.0 2.5 3.4 139 chr3R 29606084 intron alph + chr3R 29606154 intron alph + chr3R 29606223 intron alph + chr3R_12_29605001 chr3R_29605001 RAL-380 1739 chr3R 29758945 29758970 chr3R 29759023 29759048 8 77 5.0 4.5 4.8 1.4 103 chr3R 29758945 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-380 1740 chr3R 29760360 29760379 chr3R 29761561 29761579 pogo 9 1200 2.5 2.5 2.5 2.6 1219 chr3R 29760360 intergenic not near genes chr3R 29760970 intergenic not near genes chr3R 29761579 intergenic not near genes chr3R_9_29760001 chr3R_29760001 RAL-380 1741 chr3R 29773875 29773907 chr3R 29773966 29773997 9 85 3.0 2.0 2.5 2.6 122 chr3R 29773875 intron kay + chr3R 29773936 intron kay + chr3R 29773997 intron kay + chr3R_9_29770001 chr3R_29770001 RAL-380 1742 chr3R 29831814 29831842 chr3R 29831896 29831927 14 83 2.5 5.5 4.0 2.8 113 chr3R 29831814 exon Atg16 - chr3R 29831870 intron Atg16 - chr3R 29831927 exon Atg16 - chr3R_14_29830001 chr3R_29830001 RAL-380 1743 chr3R 29854833 29854861 chr3R 29854910 29854923 9 76 3.5 4.5 4.0 1.8 90 chr3R 29854833 3` UTR dgt1 - chr3R 29854878 exon dgt1 - chr3R 29854923 exon dgt1 - chr3R_9_29850001 chr3R_29850001 RAL-380 1744 chr3R 29882018 29882050 chr3R 29891175 29891207 roo 6 9157 8.0 1.5 4.8 1.0 9189 chr3R 29882018 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-380 1745 chr3R 30032160 30032182 chr3R 30032239 30032258 9 77 4.0 1.5 2.8 2.4 98 chr3R 30032160 intron Axn + chr3R 30032209 intron Axn + chr3R 30032258 intron Axn + chr3R_9_30030001 chr3R_30030001 RAL-380 1746 chr3R 30075566 30075584 chr3R 30075655 30075673 6 88 1.0 4.5 2.8 1.6 107 chr3R 30075566 intron sima + chr3R 30075620 intron sima + chr3R 30075673 intron sima + chr3R_6_30075001 chr3R_30075001 RAL-380 1747 chr3R 30080466 30080480 chr3R 30080545 30080559 6 79 2.0 3.5 2.8 1.6 93 chr3R 30080466 intron sima + chr3R 30080512 intron sima + chr3R 30080559 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-380 1748 chr3R 30084867 30084881 chr3R 30086316 30086348 hobo 8 1459 0.0 4.5 2.2 2.5 1481 chr3R 30084867 intron sima + chr3R 30085608 intron sima + chr3R 30086348 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-380 1749 chr3R 30238760 30238792 chr3R 30239924 30239955 1360 8 1162 1.0 1.0 1.0 4.0 1195 chr3R 30238760 intergenic not near genes chr3R 30239358 intergenic not near genes chr3R 30239955 intergenic not near genes chr3R_8_30235001 chr3R_30235001 RAL-380 1750 chr3R 30268424 30268440 chr3R 30268504 30268521 5 80 3.5 6.0 4.8 0.9 97 chr3R 30268424 intergenic not near genes chr3R 30268472 intergenic not near genes chr3R 30268521 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-380 1751 chr3R 30330493 30330513 chr3R 30330573 30330587 7 79 5.0 2.0 3.5 1.6 94 chr3R 30330493 intron hdc + chr3R 30330540 intron hdc + chr3R 30330587 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-380 1752 chr3R 30396219 30396242 chr3R 30404485 30404508 roo 5 8266 2.5 6.0 4.2 1.0 8289 chr3R 30396219 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404508 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-380 1753 chr3R 30458011 30458043 chr3R 30458091 30458123 13 80 3.0 4.0 3.5 2.9 112 chr3R 30458011 intron CG2224 - chr3R 30458067 intron CG2224 - chr3R 30458123 intron CG2224 - chr3R_13_30455001 chr3R_30455001 RAL-380 1754 chr3R 30480488 30480496 chr3R 30482956 30482964 jockey 4 2468 7.0 4.5 5.8 0.6 2476 chr3R 30480488 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482964 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-380 1755 chr3R 30480497 30480507 chr3R 30482952 30482975 jockey 5 2464 4.5 4.5 4.5 0.9 2478 chr3R 30480497 intron PH4alphaEFB + chr3R 30481736 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-380 1756 chr3R 30498411 30498435 chr3R 30498611 30498631 8 199 0.0 3.5 1.8 2.9 220 chr3R 30498411 intron PH4alphaNE1 - chr3R 30498521 intron PH4alphaNE1 - chr3R 30498631 intron PH4alphaNE1 - chr3R_8_30495001 chr3R_30495001 RAL-380 1757 chr3R 30554402 30554426 chr3R 30554478 30554502 5 74 5.5 4.0 4.8 0.9 100 chr3R 30554402 intron tmod + chr3R 30554452 intron tmod + chr3R 30554502 intron tmod + chr3R_5_30550001 chr3R_30550001 RAL-380 1758 chr3R 30617182 30617198 chr3R 30617256 30617274 4 74 4.0 3.5 3.8 0.8 92 chr3R 30617182 intergenic not near genes chr3R 30617228 intergenic not near genes chr3R 30617274 intergenic not near genes chr3R_4_30615001 chr3R_30615001 RAL-380 1759 chr3R 30627603 30627627 chr3R 30627683 30627690 12 75 5.0 8.5 6.8 1.5 87 chr3R 30627603 3` UTR CG2267 - chr3R 30627646 exon CG2267 - chr3R 30627690 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-380 1760 chr3R 30627629 30627639 chr3R 30627682 30627698 4 68 3.0 8.0 5.5 0.6 69 chr3R 30627629 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627698 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-380 1761 chr3R 30679544 30679548 chr3R 30687013 30687017 blood 4 7468 4.5 6.5 5.5 0.6 7473 chr3R 30679544 intergenic not near genes chr3R 30683280 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-380 1762 chr3R 30690171 30690179 chr3R 30690252 30690263 4 83 5.5 6.0 5.8 0.6 92 chr3R 30690171 intergenic Spn100A + chr3R 30690217 intergenic Spn100A + chr3R 30690263 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-380 1763 chr3R 30700867 30700879 chr3R 30700990 30701002 4 122 2.0 2.0 2.0 1.3 135 chr3R 30700867 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701002 intergenic not near genes chr3R_4_30700001 chr3R_30700001 RAL-380 1764 chr3R 30818832 30818843 chr3R 30820383 30820408 1360 6 1560 2.5 1.5 2.0 2.0 1576 chr3R 30818832 intron cindr + chr3R 30819620 intron cindr + chr3R 30820408 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-380 1765 chr3R 30953843 30953850 chr3R 30953944 30953951 4 101 12.5 3.5 8.0 0.4 108 chr3R 30953843 intergenic not near genes chr3R 30953897 intergenic not near genes chr3R 30953951 intergenic not near genes chr3R_4_30950001 chr3R_30950001 RAL-380 1766 chr3R 31031958 31031992 chr3R 31032122 31032133 8 159 3.0 1.5 2.2 2.5 175 chr3R 31031958 intergenic not near genes chr3R 31032046 intergenic not near genes chr3R 31032133 intergenic not near genes chr3R_8_31030001 chr3R_31030001 RAL-380 1767 chr3R 31042992 31043008 chr3R 31043068 31043085 5 75 10.5 7.0 8.8 0.5 93 chr3R 31042992 intron CanA1 + chr3R 31043038 intron CanA1 + chr3R 31043085 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-380 1768 chr3R 31043009 31043016 chr3R 31043065 31043093 6 73 9.0 7.0 8.0 0.7 84 chr3R 31043009 intron CanA1 + chr3R 31043051 intron CanA1 + chr3R 31043093 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-380 1769 chr3R 31074230 31074253 chr3R 31081828 31081849 springer 7 7597 4.0 2.0 3.0 1.8 7619 chr3R 31074230 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081849 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-380 1770 chr3R 31105903 31105917 chr3R 31105989 31106001 5 84 1.5 4.0 2.8 1.3 98 chr3R 31105903 intergenic CG11318 - chr3R 31105952 intergenic CG11318 - chr3R 31106001 intergenic CG11318 - chr3R_5_31105001 chr3R_31105001 RAL-380 1771 chr3R 31105918 31105922 chr3R 31105987 31106008 4 82 1.0 4.0 2.5 1.1 90 chr3R 31105918 intergenic CG11318 - chr3R 31105963 intergenic CG11318 - chr3R 31106008 intergenic CG11318 - chr3R_4_31105001 chr3R_31105001 RAL-380 1772 chr3R 31269697 31269724 chr3R 31269815 31269842 7 115 5.0 3.5 4.2 1.3 145 chr3R 31269697 intergenic not near genes chr3R 31269770 intergenic not near genes chr3R 31269842 intergenic not near genes chr3R_7_31265001 chr3R_31265001 RAL-380 1773 chr3R 31279372 31279408 chr3R 31285562 31285597 diver 10 6182 2.5 4.0 3.2 2.4 6225 chr3R 31279372 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285597 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-380 1774 chr3R 31292505 31292529 chr3R 31292735 31292745 10 230 2.5 4.5 3.5 2.2 240 chr3R 31292505 intergenic not near genes chr3R 31292625 intergenic not near genes chr3R 31292745 intergenic not near genes chr3R_10_31290001 chr3R_31290001 RAL-380 1775 chr3R 31310265 31310293 chr3R 31310335 31310368 13 74 3.0 2.0 2.5 3.7 103 chr3R 31310265 intergenic not near genes chr3R 31310316 intergenic not near genes chr3R 31310368 intergenic not near genes chr3R_13_31310001 chr3R_31310001 RAL-380 1776 chr3R 31413097 31413109 chr3R 31418290 31418309 copia 5 5198 5.0 0.5 2.8 1.3 5212 chr3R 31413097 intron Gprk2 + chr3R 31415703 intron Gprk2 + chr3R 31418309 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-380 1777 chr3R 31426887 31426907 chr3R 31426979 31426999 6 92 2.0 5.0 3.5 1.3 112 chr3R 31426887 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31426999 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-380 1778 chr3R 31435362 31435389 chr3R 31435514 31435541 10 151 3.5 3.5 3.5 2.2 179 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_10_31435001 chr3R_31435001 RAL-380 1779 chr3R 31462336 31462365 chr3R 31462425 31462426 5 79 7.5 0.0 3.8 1.0 90 chr3R 31462336 intron CG11334 - chr3R 31462381 intron CG11334 - chr3R 31462426 intron CG11334 - chr3R_5_31460001 chr3R_31460001 RAL-380 1780 chr3R 31512602 31512632 chr3R 31512684 31512713 19 79 3.5 4.5 4.0 3.8 111 chr3R 31512602 intergenic not near genes chr3R 31512658 intergenic not near genes chr3R 31512713 intergenic not near genes chr3R_19_31510001 chr3R_31510001 RAL-380 1781 chr3R 31558507 31558537 chr3R 31558626 31558656 7 119 4.0 5.5 4.8 1.2 149 chr3R 31558507 exon nyo + chr3R 31558582 intron nyo + chr3R 31558656 intron nyo + chr3R_7_31555001 chr3R_31555001 RAL-380 1782 chr3R 31589104 31589131 chr3R 31589196 31589223 7 89 3.5 14.0 8.8 0.7 119 chr3R 31589104 3` UTR,exon CR45190 -,CG1635 + chr3R 31589164 3` UTR,exon CR45190 -,CG1635 + chr3R 31589223 3` UTR,exon CR45190 -,CG1635 + chr3R_7_31585001 chr3R_31585001 RAL-380 1783 chr3R 31624460 31624474 chr3R 31624552 31624566 8 91 5.0 2.5 3.8 1.7 106 chr3R 31624460 intron kek6 + chr3R 31624513 intron kek6 + chr3R 31624566 intron kek6 + chr3R_8_31620001 chr3R_31620001 RAL-380 1784 chr3R 31630063 31630081 chr3R 31630168 31630176 4 102 1.5 4.5 3.0 1.0 113 chr3R 31630063 intron kek6 + chr3R 31630120 intron kek6 + chr3R 31630176 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-380 1785 chr3R 31691533 31691564 chr3R 31696296 31696330 Doc 16 4762 5.0 5.0 5.0 2.7 4797 chr3R 31691533 intergenic not near genes chr3R 31693932 intergenic not near genes chr3R 31696330 intergenic not near genes chr3R_16_31690001 chr3R_31690001 RAL-380 1786 chr3R 31887312 31887337 chr3R 31887411 31887427 7 97 3.5 2.0 2.8 1.8 115 chr3R 31887312 intron heph - chr3R 31887370 intron heph - chr3R 31887427 intron heph - chr3R_7_31885001 chr3R_31885001 RAL-380 1787 chr3R 31962085 31962096 chr3R 31962391 31962401 4 306 3.5 4.5 4.0 0.8 316 chr3R 31962085 intron heph - chr3R 31962243 intron heph - chr3R 31962401 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-380 1788 chr3R 31997990 31998025 chr3R 32005460 32005470 blood 12 7466 2.5 1.5 2.0 4.0 7480 chr3R 31997990 intron heph - chr3R 32001730 intron heph - chr3R 32005470 intron heph - chr3R_12_32000001 chr3R_32000001 RAL-380 1789 chr4 197046 197075 chr4 197124 197152 4 78 0.0 1.5 0.8 2.2 106 chr4 197046 3` UTR CG31998 - chr4 197099 3` UTR CG31998 - chr4 197152 3` UTR CG31998 - chr4_4_195001 chr4_195001 RAL-380 1790 chr4 671605 671638 chr4 680187 680216 Tirant 11 8582 3.5 4.0 3.8 2.3 8611 chr4 671605 intron CG11360 + chr4 675910 intron CG11360 + chr4 680216 intron CG11360 + chr4_11_675001 chr4_675001 RAL-380 1791 chr4 959625 959656 chr4 959802 959835 8 179 1.0 4.5 2.8 2.1 210 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959835 5` UTR CR44030 + chr4_8_955001 chr4_955001 RAL-380 1792 chrX 292429 292444 chrX 293088 293103 G3 6 659 2.0 17.0 9.5 0.6 674 chrX 292429 intron,intron CG3777 +,CG13375 - chrX 292766 intron,intron CG3777 +,CG13375 - chrX 293103 intron,intron CG3777 +,CG13375 - chrX_6_290001 chrX_290001 RAL-380 1793 chrX 295859 295874 chrX 303479 303480 412 4 7616 3.0 2.5 2.8 1.1 7621 chrX 295859 intron CG3777 + chrX 299670 intron CG3777 + chrX 303480 intron CG3777 + chrX_4_295001 chrX_295001 RAL-380 1794 chrX 318473 318492 chrX 323559 323578 flea 7 5086 2.5 1.5 2.0 2.3 5105 chrX 318473 intron,intron CG3777 +,CG32816 - chrX 321026 intron,intron CG3777 +,CG32816 - chrX 323578 intron,intron CG3777 +,CG32816 - chrX_7_320001 chrX_320001 RAL-380 1795 chrX 428417 428449 chrX 434602 434634 3S18 7 6185 3.0 4.0 3.5 1.6 6217 chrX 428417 intron CG32816 - chrX 431526 intron CG32816 - chrX 434634 intron CG32816 - chrX_7_430001 chrX_430001 RAL-380 1796 chrX 440994 441025 chrX 441072 441076 9 73 2.5 6.0 4.2 1.7 82 chrX 440994 intron CG32816 - chrX 441035 intron CG32816 - chrX 441076 intron CG32816 - chrX_9_440001 chrX_440001 RAL-380 1797 chrX 494618 494634 chrX 494688 494726 4 82 0.5 2.0 1.2 1.8 108 chrX 494618 5` UTR CG17778 + chrX 494672 5` UTR CG17778 + chrX 494726 intron CG17778 + chrX_4_490001 chrX_490001 RAL-380 1798 chrX 547632 547654 chrX 547876 547898 8 243 3.5 2.0 2.8 2.1 266 chrX 547632 intron Appl + chrX 547765 intron Appl + chrX 547898 intron Appl + chrX_8_545001 chrX_545001 RAL-380 1799 chrX 551423 551453 chrX 558982 559015 412 10 7560 6.0 1.0 3.5 2.2 7592 chrX 551423 intron Appl + chrX 555219 intron Appl + chrX 559015 intron Appl + chrX_10_555001 chrX_555001 RAL-380 1800 chrX 667659 667680 chrX 667743 667760 6 82 2.0 2.5 2.2 1.9 101 chrX 667659 intergenic not near genes chrX 667710 intergenic not near genes chrX 667760 intergenic not near genes chrX_6_665001 chrX_665001 RAL-380 1801 chrX 670266 670297 chrX 670346 670373 12 79 0.0 0.5 0.2 10.0 107 chrX 670266 intergenic not near genes chrX 670320 intergenic not near genes chrX 670373 intergenic not near genes chrX_12_670001 chrX_670001 RAL-380 1802 chrX 680843 680871 chrX 680926 680953 7 79 3.5 5.5 4.5 1.3 110 chrX 680843 intergenic not near genes chrX 680898 intergenic not near genes chrX 680953 intergenic not near genes chrX_7_680001 chrX_680001 RAL-380 1803 chrX 695295 695322 chrX 695371 695382 6 71 2.5 1.5 2.0 2.0 87 chrX 695295 intron sdk + chrX 695338 intron sdk + chrX 695382 intron sdk + chrX_6_695001 chrX_695001 RAL-380 1804 chrX 778127 778157 chrX 778217 778246 12 88 3.0 1.0 2.0 4.0 119 chrX 778127 intron fz3 + chrX 778186 intron fz3 + chrX 778246 intron fz3 + chrX_12_775001 chrX_775001 RAL-380 1805 chrX 802294 802321 chrX 802366 802384 10 73 4.5 4.5 4.5 1.8 90 chrX 802294 exon CG13359 - chrX 802339 exon CG13359 - chrX 802384 exon CG13359 - chrX_10_800001 chrX_800001 RAL-380 1806 chrX 806784 806816 chrX 806880 806912 4 95 2.0 2.0 2.0 1.3 128 chrX 806784 intron Sec22 + chrX 806848 intron Sec22 + chrX 806912 intron Sec22 + chrX_4_805001 chrX_805001 RAL-380 1807 chrX 868495 868518 chrX 868572 868580 9 75 3.5 7.0 5.2 1.5 85 chrX 868495 intron CG43867 - chrX 868538 intron CG43867 - chrX 868580 intron CG43867 - chrX_9_865001 chrX_865001 RAL-380 1808 chrX 1053117 1053120 chrX 16983076 16983077 19 15929958 14.5 18.5 16.5 1.1 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_19_9015001 chrX_9015001 RAL-380 1809 chrX 1150569 1150575 chrX 1151004 1151016 5 439 4.0 2.0 3.0 1.2 447 chrX 1150569 intergenic not near genes chrX 1150792 intergenic not near genes chrX 1151016 intergenic not near genes chrX_5_1150001 chrX_1150001 RAL-380 1810 chrX 1205526 1205558 chrX 1205607 1205628 6 78 0.5 4.0 2.2 1.9 102 chrX 1205526 intergenic CG11381 + chrX 1205577 intergenic CG11381 + chrX 1205628 intergenic CG11381 + chrX_6_1205001 chrX_1205001 RAL-380 1811 chrX 1357786 1357809 chrX 1367955 1367979 Doc 6 10170 3.5 6.0 4.8 1.0 10193 chrX 1357786 intergenic png - chrX 1362882 intergenic not near genes chrX 1367979 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-380 1812 chrX 1402270 1402290 chrX 1402625 1402648 9 353 3.0 2.0 2.5 2.6 378 chrX 1402270 intergenic not near genes chrX 1402459 intergenic not near genes chrX 1402648 intergenic not near genes chrX_9_1400001 chrX_1400001 RAL-380 1813 chrX 1428591 1428623 chrX 1428677 1428709 11 84 2.5 2.5 2.5 3.1 118 chrX 1428591 intron futsch + chrX 1428650 intron futsch + chrX 1428709 intron futsch + chrX_11_1425001 chrX_1425001 RAL-380 1814 chrX 1518043 1518055 chrX 1523444 1523450 jockey 4 5400 3.5 2.0 2.8 1.1 5407 chrX 1518043 intergenic inc + chrX 1520746 intergenic not near genes chrX 1523450 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-380 1815 chrX 1554513 1554522 chrX 1554670 1554679 6 157 31.0 23.0 27.0 0.2 166 chrX 1554513 exon Mur2B - chrX 1554596 intron Mur2B - chrX 1554679 exon Mur2B - chrX_6_1550001 chrX_1550001 RAL-380 1816 chrX 1554524 1554544 chrX 1554668 1554701 4 150 31.5 23.0 27.2 0.1 177 chrX 1554524 exon Mur2B - chrX 1554612 intron Mur2B - chrX 1554701 exon Mur2B - chrX_4_1550001 chrX_1550001 RAL-380 1817 chrX 1627981 1628001 chrX 1635443 1635469 gtwin 6 7467 1.5 2.5 2.0 2.0 7488 chrX 1627981 intron,intron Mur2B -,br + chrX 1631725 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-380 1818 chrX 1674860 1674866 chrX 1674936 1674942 4 76 6.5 0.0 3.2 1.0 82 chrX 1674860 3` UTR CG32809 - chrX 1674901 3` UTR CG32809 - chrX 1674942 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-380 1819 chrX 1790615 1790639 chrX 1790696 1790700 8 74 4.5 5.0 4.8 1.4 85 chrX 1790615 intron CG42666 + chrX 1790658 intron CG42666 + chrX 1790700 intron CG42666 + chrX_8_1790001 chrX_1790001 RAL-380 1820 chrX 1930537 1930563 chrX 1938108 1938134 opus 6 7570 0.5 3.5 2.0 2.0 7597 chrX 1930537 intergenic CG11596 + chrX 1934336 intergenic not near genes chrX 1938134 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-380 1821 chrX 1954896 1954916 chrX 1962826 1962855 Stalker2 5 7934 2.5 2.5 2.5 1.4 7959 chrX 1954896 intron Hr4 + chrX 1958876 intron Hr4 + chrX 1962855 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-380 1822 chrX 1987493 1987507 chrX 1987595 1987611 5 104 4.5 3.5 4.0 1.0 118 chrX 1987493 intron Hr4 + chrX 1987552 intron Hr4 + chrX 1987611 intron Hr4 + chrX_5_1985001 chrX_1985001 RAL-380 1823 chrX 2096373 2096387 chrX 2096466 2096480 6 93 2.5 2.0 2.2 1.9 107 chrX 2096373 intron csw + chrX 2096426 intron csw + chrX 2096480 intron csw + chrX_6_2095001 chrX_2095001 RAL-380 1824 chrX 2146658 2146688 chrX 2146744 2146780 10 89 4.0 3.5 3.8 2.1 122 chrX 2146658 intron Pgd + chrX 2146719 intron Pgd + chrX 2146780 intron Pgd + chrX_10_2145001 chrX_2145001 RAL-380 1825 chrX 2214517 2214546 chrX 4720294 4720327 9 2505778 13.0 6.5 9.8 0.8 2505810 chrX 2214517 3` UTR Vinc - chrX 3467422 intron,intron CR44999 +,CG12206 - chrX 4720327 intron Proc-R + chrX_9_3465001 chrX_3465001 RAL-380 1826 chrX 2291645 2291673 chrX 2291727 2291756 7 81 4.5 1.0 2.8 1.8 111 chrX 2291645 intron CG2865 - chrX 2291700 intron CG2865 - chrX 2291756 intron CG2865 - chrX_7_2290001 chrX_2290001 RAL-380 1827 chrX 2399841 2399871 chrX 2408190 2408209 roo 11 8345 3.5 3.0 3.2 2.6 8368 chrX 2399841 intergenic not near genes chrX 2404025 intergenic not near genes chrX 2408209 intergenic not near genes chrX_11_2400001 chrX_2400001 RAL-380 1828 chrX 2419707 2419732 chrX 2419795 2419820 9 88 2.0 3.0 2.5 2.6 113 chrX 2419707 intergenic not near genes chrX 2419764 intergenic not near genes chrX 2419820 intergenic not near genes chrX_9_2415001 chrX_2415001 RAL-380 1829 chrX 2535821 2535858 chrX 2535897 2535922 11 75 2.0 6.0 4.0 2.2 101 chrX 2535821 intron trol - chrX 2535872 intron trol - chrX 2535922 intron trol - chrX_11_2535001 chrX_2535001 RAL-380 1830 chrX 2578815 2578846 chrX 2578903 2578937 5 87 3.0 5.5 4.2 1.0 122 chrX 2578815 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-380 1831 chrX 2694430 2694448 chrX 2694508 2694527 7 75 3.0 4.5 3.8 1.5 97 chrX 2694430 3` UTR CG2658 - chrX 2694478 3` UTR CG2658 - chrX 2694527 3` UTR CG2658 - chrX_7_2690001 chrX_2690001 RAL-380 1832 chrX 2803498 2803527 chrX 2803641 2803670 6 143 3.5 1.5 2.5 1.7 172 chrX 2803498 intron kirre + chrX 2803584 intron kirre + chrX 2803670 intron kirre + chrX_6_2800001 chrX_2800001 RAL-380 1833 chrX 2820545 2820576 chrX 2820621 2820638 9 73 2.5 2.5 2.5 2.6 93 chrX 2820545 intron kirre + chrX 2820592 intron kirre + chrX 2820638 intron kirre + chrX_9_2820001 chrX_2820001 RAL-380 1834 chrX 2844915 2844932 chrX 2852323 2852342 mdg1 4 7410 1.5 5.5 3.5 0.9 7427 chrX 2844915 intron kirre + chrX 2848628 intron kirre + chrX 2852342 intron kirre + chrX_4_2845001 chrX_2845001 RAL-380 1835 chrX 2888114 2888146 chrX 2888192 2888220 9 77 3.5 4.0 3.8 1.9 106 chrX 2888114 intron kirre + chrX 2888167 intron kirre + chrX 2888220 intron kirre + chrX_9_2885001 chrX_2885001 RAL-380 1836 chrX 2932233 2932250 chrX 2932315 2932319 4 77 1.5 1.0 1.2 1.8 86 chrX 2932233 intron,exon kirre +,CG32793 + chrX 2932276 intron,exon kirre +,CG32793 + chrX 2932319 intron,exon kirre +,CG32793 + chrX_4_2930001 chrX_2930001 RAL-380 1837 chrX 3058021 3058032 chrX 3058262 3058273 pogo 4 241 3.0 1.5 2.2 1.2 252 chrX 3058021 intron kirre + chrX 3058147 intron kirre + chrX 3058273 intron kirre + chrX_4_3055001 chrX_3055001 RAL-380 1838 chrX 3075642 3075652 chrX 3080942 3080957 Transpac 4 5304 4.5 2.0 3.2 1.0 5315 chrX 3075642 intron kirre + chrX 3078300 intron kirre + chrX 3080957 intron kirre + chrX_4_3075001 chrX_3075001 RAL-380 1839 chrX 3120076 3120092 chrX 3120154 3120170 6 77 2.0 2.0 2.0 2.0 94 chrX 3120076 intron kirre + chrX 3120123 intron kirre + chrX 3120170 intron kirre + chrX_6_3120001 chrX_3120001 RAL-380 1840 chrX 3398144 3398159 chrX 3398225 3398239 4 80 4.0 6.0 5.0 0.7 95 chrX 3398144 intron,intron CR44999 +,CG12535 - chrX 3398192 intron,intron CR44999 +,CG12535 - chrX 3398239 intron,intron CR44999 +,CG12535 - chrX_4_3395001 chrX_3395001 RAL-380 1841 chrX 3408989 3409012 chrX 3409063 3409089 10 76 0.5 2.5 1.5 4.0 100 chrX 3408989 intron,intron CR44999 +,CG12535 - chrX 3409039 intron,intron CR44999 +,CG12535 - chrX 3409089 intron,intron CR44999 +,CG12535 - chrX_10_3405001 chrX_3405001 RAL-380 1842 chrX 3415041 3415046 chrX 3421203 3421231 3S18 4 6179 1.0 2.5 1.8 1.4 6190 chrX 3415041 intron,intron CR44999 +,CG12535 - chrX 3418136 intron,intron CR44999 +,CG12535 - chrX 3421231 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-380 1843 chrX 3493092 3493114 chrX 3502249 3502256 roo 6 9154 2.0 1.5 1.8 2.1 9164 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497674 intron,intron CR44999 +,Gas8 - chrX 3502256 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-380 1844 chrX 3597113 3597124 chrX 3597200 3597212 5 88 1.0 4.0 2.5 1.4 99 chrX 3597113 intron AstA-R1 + chrX 3597162 intron AstA-R1 + chrX 3597212 intron AstA-R1 + chrX_5_3595001 chrX_3595001 RAL-380 1845 chrX 3597550 3597582 chrX 3619717 3619750 roo 11 22166 2.0 1.5 1.8 3.9 22200 chrX 3597550 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-380 1846 chrX 3629857 3629883 chrX 3629942 3629968 10 85 2.0 1.5 1.8 3.6 111 chrX 3629857 intron AstA-R1 + chrX 3629912 intron AstA-R1 + chrX 3629968 intron AstA-R1 + chrX_10_3625001 chrX_3625001 RAL-380 1847 chrX 3630544 3630571 chrX 3630620 3630639 9 73 3.0 2.5 2.8 2.4 95 chrX 3630544 intron AstA-R1 + chrX 3630592 intron AstA-R1 + chrX 3630639 intron AstA-R1 + chrX_9_3630001 chrX_3630001 RAL-380 1848 chrX 3691043 3691052 chrX 3691184 3691191 4 140 7.0 1.5 4.2 0.8 148 chrX 3691043 intron Mnt + chrX 3691117 intron Mnt + chrX 3691191 intron Mnt + chrX_4_3690001 chrX_3690001 RAL-380 1849 chrX 3691054 3691066 chrX 3691183 3691190 5 133 4.5 1.5 3.0 1.2 136 chrX 3691054 intron Mnt + chrX 3691122 intron Mnt + chrX 3691190 intron Mnt + chrX_5_3690001 chrX_3690001 RAL-380 1850 chrX 3713124 3713136 chrX 3713233 3713245 7 108 2.0 2.5 2.2 2.2 121 chrX 3713124 intron Rala - chrX 3713184 intron Rala - chrX 3713245 intron Rala - chrX_7_3710001 chrX_3710001 RAL-380 1851 chrX 3726761 3726795 chrX 3730156 3730190 NOF 6 3395 3.0 2.0 2.5 1.7 3429 chrX 3726761 intron tlk + chrX 3728476 intron tlk + chrX 3730190 intron tlk + chrX_6_3725001 chrX_3725001 RAL-380 1852 chrX 3866106 3866137 chrX 3866183 3866215 8 76 1.0 3.0 2.0 2.7 109 chrX 3866106 intron yin - chrX 3866160 intron yin - chrX 3866215 intron yin - chrX_8_3865001 chrX_3865001 RAL-380 1853 chrX 3986865 3986891 chrX 3994498 3994524 412 11 7633 3.0 3.0 3.0 2.8 7659 chrX 3986865 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994524 intergenic not near genes chrX_11_3990001 chrX_3990001 RAL-380 1854 chrX 4047467 4047501 chrX 4047580 4047595 12 110 2.5 4.0 3.2 2.9 128 chrX 4047467 intergenic CR45482 - chrX 4047531 intergenic CR45482 - chrX 4047595 3` UTR CR45482 - chrX_12_4045001 chrX_4045001 RAL-380 1855 chrX 4067987 4067988 chrX 10754861 10754864 8 6686874 9.5 22.0 15.8 0.5 6686877 chrX 4067987 intergenic not near genes chrX 7411426 3` UTR CG42246 - chrX 10754864 intron Rph - chrX_8_7410001 chrX_7410001 RAL-380 1856 chrX 4436457 4436466 chrX 4436533 4436542 4 76 5.5 1.0 3.2 1.0 85 chrX 4436457 intron,intron CR32773 -,bi + chrX 4436500 intron,intron CR32773 -,bi + chrX 4436542 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-380 1857 chrX 4700392 4700419 chrX 4700735 4700762 jockey 6 343 1.5 2.0 1.8 2.1 370 chrX 4700392 3` UTR ctp + chrX 4700577 3` UTR ctp + chrX 4700762 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-380 1858 chrX 4731814 4731836 chrX 4736907 4736920 jockey 9 5091 3.5 1.5 2.5 2.6 5106 chrX 4731814 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736920 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-380 1859 chrX 4763265 4763282 chrX 4763751 4763770 Stalker4 5 487 2.0 1.5 1.8 1.8 505 chrX 4763265 intergenic not near genes chrX 4763518 intergenic not near genes chrX 4763770 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-380 1860 chrX 4792383 4792412 chrX 4792816 4792842 jockey 6 432 1.5 6.0 3.8 1.2 459 chrX 4792383 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792842 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-380 1861 chrX 4805476 4805477 chrX 7978935 7978935 4 3173459 13.5 15.5 14.5 0.3 3173459 chrX 4805476 3` UTR CR45516 - chrX 6392206 intergenic not near genes chrX 7978935 intron sn + chrX_4_6390001 chrX_6390001 RAL-380 1862 chrX 4827968 4827999 chrX 4835339 4835370 Stalker4 12 7369 3.5 1.5 2.5 3.4 7402 chrX 4827968 intergenic not near genes chrX 4831669 intergenic not near genes chrX 4835370 intergenic not near genes chrX_12_4830001 chrX_4830001 RAL-380 1863 chrX 4990047 4990068 chrX 4997261 4997282 roo 4 7214 3.5 2.5 3.0 1.0 7235 chrX 4990047 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997282 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-380 1864 chrX 5096275 5096298 chrX 5103840 5103862 springer 7 7561 3.5 1.5 2.5 2.0 7587 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103862 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-380 1865 chrX 5167323 5167351 chrX 5167507 5167528 5 181 2.5 5.0 3.8 1.0 205 chrX 5167323 intron,intron CG15465 +,rg + chrX 5167426 intron,intron CG15465 +,rg + chrX 5167528 intron,intron CG15465 +,rg + chrX_5_5165001 chrX_5165001 RAL-380 1866 chrX 5349275 5349308 chrX 5349352 5349385 7 76 2.5 2.5 2.5 2.0 110 chrX 5349275 intron SK + chrX 5349330 intron SK + chrX 5349385 intron SK + chrX_7_5345001 chrX_5345001 RAL-380 1867 chrX 5435244 5435257 chrX 5435487 5435490 12 242 3.5 6.0 4.8 2.1 246 chrX 5435244 intron CR44471 + chrX 5435367 5` UTR CR44471 + chrX 5435490 5` UTR CR44471 + chrX_12_5435001 chrX_5435001 RAL-380 1868 chrX 5473596 5473620 chrX 5473672 5473696 5 76 3.5 3.5 3.5 1.1 100 chrX 5473596 intron SPR + chrX 5473646 intron SPR + chrX 5473696 intron SPR + chrX_5_5470001 chrX_5470001 RAL-380 1869 chrX 5524851 5524870 chrX 5528706 5528733 412 5 3861 3.5 0.5 2.0 1.7 3882 chrX 5524851 intergenic snoRNA:Psi28S-3342 - chrX 5526792 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_5_5525001 chrX_5525001 RAL-380 1870 chrX 5566776 5566781 chrX 5566854 5566855 4 78 5.0 3.0 4.0 0.8 79 chrX 5566776 intergenic not near genes chrX 5566816 intergenic not near genes chrX 5566855 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-380 1871 chrX 5848776 5848778 chrX 5848980 5848987 4 207 4.5 6.0 5.2 0.6 211 chrX 5848776 intergenic not near genes chrX 5848882 intergenic not near genes chrX 5848987 intergenic not near genes chrX_4_5845001 chrX_5845001 RAL-380 1872 chrX 5883808 5883840 chrX 5884049 5884080 pogo 11 239 2.0 3.0 2.5 3.1 272 chrX 5883808 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884080 intron CR45668 - chrX_11_5880001 chrX_5880001 RAL-380 1873 chrX 5884169 5884190 chrX 5884402 5884429 pogo 7 239 3.5 2.0 2.8 1.8 260 chrX 5884169 intron CR45668 - chrX 5884299 intron CR45668 - chrX 5884429 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-380 1874 chrX 6003287 6003312 chrX 6003368 6003393 5 81 0.5 5.0 2.8 1.3 106 chrX 6003287 intron CR44498 + chrX 6003340 intron CR44498 + chrX 6003393 intron CR44498 + chrX_5_6000001 chrX_6000001 RAL-380 1875 chrX 6118703 6118730 chrX 6118785 6118812 15 79 2.0 5.5 3.8 3.1 109 chrX 6118703 intron Ca-alpha1T - chrX 6118758 intron Ca-alpha1T - chrX 6118812 intron Ca-alpha1T - chrX_15_6115001 chrX_6115001 RAL-380 1876 chrX 6133264 6133272 chrX 6133330 6133362 7 81 2.0 4.0 3.0 1.8 98 chrX 6133264 intron Ca-alpha1T - chrX 6133313 intron Ca-alpha1T - chrX 6133362 intron Ca-alpha1T - chrX_7_6130001 chrX_6130001 RAL-380 1877 chrX 6171592 6171598 chrX 6179025 6179031 Quasimodo 4 7433 2.5 2.5 2.5 1.1 7439 chrX 6171592 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179031 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-380 1878 chrX 6335213 6335237 chrX 6337723 6337747 Tirant 6 2510 0.0 3.0 1.5 2.4 2534 chrX 6335213 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337747 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-380 1879 chrX 6388669 6388694 chrX 6388745 6388770 11 76 3.5 2.0 2.8 2.9 101 chrX 6388669 intergenic not near genes chrX 6388720 intergenic not near genes chrX 6388770 intergenic not near genes chrX_11_6385001 chrX_6385001 RAL-380 1880 chrX 6392869 6392904 chrX 6397633 6397669 Doc 18 4763 3.0 6.5 4.8 3.1 4800 chrX 6392869 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397669 intergenic not near genes chrX_18_6395001 chrX_6395001 RAL-380 1881 chrX 6562820 6562847 chrX 6571299 6571328 Tirant 15 8479 2.5 6.0 4.2 2.9 8508 chrX 6562820 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571328 intron CG34417 + chrX_15_6565001 chrX_6565001 RAL-380 1882 chrX 6618468 6618472 chrX 6618546 6618550 4 78 5.0 7.0 6.0 0.6 82 chrX 6618468 intron pigs + chrX 6618509 intron pigs + chrX 6618550 intron pigs + chrX_4_6615001 chrX_6615001 RAL-380 1883 chrX 6692106 6692134 chrX 6692197 6692225 13 90 0.5 4.5 2.5 3.7 119 chrX 6692106 intron CG14442 - chrX 6692166 intron CG14442 - chrX 6692225 intron CG14442 - chrX_13_6690001 chrX_6690001 RAL-380 1884 chrX 6734246 6734271 chrX 6734354 6734387 9 112 3.5 3.0 3.2 2.1 141 chrX 6734246 intron,intron CG3168 -,CR43461 + chrX 6734316 intron,intron CG3168 -,CR43461 + chrX 6734387 intron,intron CG3168 -,CR43461 + chrX_9_6730001 chrX_6730001 RAL-380 1885 chrX 6737524 6737547 chrX 6737606 6737629 6 81 1.5 3.5 2.5 1.7 105 chrX 6737524 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737629 intron CG3168 - chrX_6_6735001 chrX_6735001 RAL-380 1886 chrX 6897580 6897593 chrX 6897657 6897671 5 78 2.0 0.5 1.2 2.3 91 chrX 6897580 intergenic not near genes chrX 6897626 intergenic not near genes chrX 6897671 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-380 1887 chrX 6897595 6897703 chrX 6897650 6897813 4 80 0.5 0.0 0.2 3.3 218 chrX 6897595 intergenic not near genes chrX 6897704 intergenic not near genes chrX 6897813 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-380 1888 chrX 6989501 6989518 chrX 6989588 6989605 5 87 3.0 2.0 2.5 1.4 104 chrX 6989501 intron ogre - chrX 6989553 intron ogre - chrX 6989605 intron ogre - chrX_5_6985001 chrX_6985001 RAL-380 1889 chrX 7022455 7022483 chrX 7022548 7022574 11 93 4.5 2.5 3.5 2.4 119 chrX 7022455 3` UTR CG12541 - chrX 7022514 3` UTR CG12541 - chrX 7022574 3` UTR CG12541 - chrX_11_7020001 chrX_7020001 RAL-380 1890 chrX 7023603 7023629 chrX 7030993 7031019 Tabor 7 7388 9.0 5.0 7.0 0.9 7416 chrX 7023603 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031019 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-380 1891 chrX 7061366 7061397 chrX 7061460 7061491 6 94 2.5 3.0 2.8 1.6 125 chrX 7061366 intron CG12541 - chrX 7061428 intron CG12541 - chrX 7061491 intron CG12541 - chrX_6_7060001 chrX_7060001 RAL-380 1892 chrX 7125248 7125277 chrX 7134407 7134436 roo 6 9159 1.0 5.5 3.2 1.4 9188 chrX 7125248 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134436 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-380 1893 chrX 7702907 7702932 chrX 7703338 7703371 jockey 12 436 3.0 3.5 3.2 2.9 464 chrX 7702907 intron CHES-1-like - chrX 7703139 intron CHES-1-like - chrX 7703371 intron CHES-1-like - chrX_12_7700001 chrX_7700001 RAL-380 1894 chrX 7784239 7784259 chrX 7784539 7784540 jockey 4 294 4.5 3.5 4.0 0.8 301 chrX 7784239 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784540 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-380 1895 chrX 7823190 7823218 chrX 7823368 7823387 8 175 0.5 2.0 1.2 3.6 197 chrX 7823190 intergenic not near genes chrX 7823288 intergenic not near genes chrX 7823387 intergenic not near genes chrX_8_7820001 chrX_7820001 RAL-380 1896 chrX 7845725 7845751 chrX 7847216 7847242 hopper2 5 1488 5.5 2.5 4.0 1.0 1517 chrX 7845725 intergenic not near genes chrX 7846484 intergenic not near genes chrX 7847242 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-380 1897 chrX 7863213 7863221 chrX 7863296 7863299 5 81 6.5 2.5 4.5 0.9 86 chrX 7863213 intergenic not near genes chrX 7863256 intergenic not near genes chrX 7863299 intergenic not near genes chrX_5_7860001 chrX_7860001 RAL-380 1898 chrX 7960877 7960908 chrX 7960966 7960997 13 88 3.0 1.0 2.0 4.3 120 chrX 7960877 intron,5` UTR sws -,CR45620 + chrX 7960937 intron sws - chrX 7960997 intron sws - chrX_13_7960001 chrX_7960001 RAL-380 1899 chrX 7977066 7977084 chrX 7977156 7977174 5 87 1.0 0.0 0.5 3.3 108 chrX 7977066 intron sn + chrX 7977120 intron sn + chrX 7977174 intron sn + chrX_5_7975001 chrX_7975001 RAL-380 1900 chrX 8092290 8092323 chrX 8092375 8092408 6 85 2.5 3.5 3.0 1.5 118 chrX 8092290 intron Ubc-E2H - chrX 8092349 intron Ubc-E2H - chrX 8092408 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-380 1901 chrX 8708696 8708715 chrX 8708882 8708898 10 185 23.0 9.0 16.0 0.6 202 chrX 8708696 intergenic not near genes chrX 8708797 intergenic not near genes chrX 8708898 intergenic not near genes chrX_10_8705001 chrX_8705001 RAL-380 1902 chrX 8730445 8730467 chrX 8730518 8730543 9 75 3.5 3.5 3.5 2.0 98 chrX 8730445 intergenic not near genes chrX 8730494 intergenic not near genes chrX 8730543 intergenic not near genes chrX_9_8730001 chrX_8730001 RAL-380 1903 chrX 8922326 8922360 chrX 8922759 8922794 jockey 15 430 4.0 5.0 4.5 2.7 468 chrX 8922326 intron rdgA + chrX 8922560 intron rdgA + chrX 8922794 intron rdgA + chrX_15_8920001 chrX_8920001 RAL-380 1904 chrX 9508134 9508161 chrX 9509652 9509679 jockey 12 1517 2.5 2.5 2.5 3.4 1545 chrX 9508134 intron CG32700 - chrX 9508906 intron CG32700 - chrX 9509679 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-380 1905 chrX 9543404 9543426 chrX 9543482 9543504 4 78 1.0 2.0 1.5 1.6 100 chrX 9543404 intron CG32700 - chrX 9543454 intron CG32700 - chrX 9543504 intron CG32700 - chrX_4_9540001 chrX_9540001 RAL-380 1906 chrX 9575792 9575822 chrX 9576116 9576146 mdg3 10 322 5.5 5.0 5.2 1.6 354 chrX 9575792 intron,exon CG32699 -,CG42395 - chrX 9575969 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-380 1907 chrX 9791860 9791894 chrX 9791957 9791970 8 94 3.0 1.5 2.2 2.5 110 chrX 9791860 intron CG32698 + chrX 9791915 intron CG32698 + chrX 9791970 intron CG32698 + chrX_8_9790001 chrX_9790001 RAL-380 1908 chrX 9839365 9839380 chrX 9839446 9839462 5 81 0.0 3.5 1.8 1.8 97 chrX 9839365 intron CG32698 + chrX 9839414 intron CG32698 + chrX 9839462 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-380 1909 chrX 9868836 9868864 chrX 9868921 9868932 4 73 3.0 2.5 2.8 1.1 96 chrX 9868836 intergenic CG45060 - chrX 9868884 intergenic CG45060 - chrX 9868932 intergenic CG45060 - chrX_4_9865001 chrX_9865001 RAL-380 1910 chrX 10022467 10022482 chrX 10022615 10022631 9 148 4.0 4.5 4.2 1.7 164 chrX 10022467 intron Cht6 + chrX 10022549 intron Cht6 + chrX 10022631 intron Cht6 + chrX_9_10020001 chrX_10020001 RAL-380 1911 chrX 10070954 10070987 chrX 10071110 10071144 4 157 2.0 0.0 1.0 2.0 190 chrX 10070954 intergenic CG15312 -,CR45602 + chrX 10071049 intergenic CG15312 -,CR45602 + chrX 10071144 intergenic CR45602 +,CG15312 - chrX_4_10070001 chrX_10070001 RAL-380 1912 chrX 10138216 10138246 chrX 10145720 10145750 412 9 7504 0.5 2.5 1.5 3.6 7534 chrX 10138216 intron,intron RhoU +,CR44894 - chrX 10141983 intron,intron RhoU +,CR44894 - chrX 10145750 intron,intron RhoU +,CR44894 - chrX_9_10140001 chrX_10140001 RAL-380 1913 chrX 10317562 10317579 chrX 10317640 10317656 5 78 0.5 1.5 1.0 2.5 94 chrX 10317562 intron alpha-Man-I - chrX 10317609 intron alpha-Man-I - chrX 10317656 intron alpha-Man-I - chrX_5_10315001 chrX_10315001 RAL-380 1914 chrX 10330424 10330673 chrX 10330858 10330887 5 254 2.0 11.0 6.5 0.7 463 chrX 10330424 exon CG15306 - chrX 10330656 exon CG15306 - chrX 10330887 exon CG15306 - chrX_5_10330001 chrX_10330001 RAL-380 1915 chrX 10382661 10382691 chrX 10382743 10382772 7 82 1.0 1.0 1.0 3.5 111 chrX 10382661 exon CG17841 + chrX 10382716 3` UTR CG17841 + chrX 10382772 3` UTR CG17841 + chrX_7_10380001 chrX_10380001 RAL-380 1916 chrX 10401394 10401430 chrX 10401475 10401508 10 79 1.5 2.5 2.0 3.3 114 chrX 10401394 intron flw + chrX 10401451 intron flw + chrX 10401508 intron flw + chrX_10_10400001 chrX_10400001 RAL-380 1917 chrX 10550341 10550366 chrX 10550419 10550444 7 77 3.5 2.0 2.8 1.8 103 chrX 10550341 intron spri - chrX 10550392 intron spri - chrX 10550444 intron spri - chrX_7_10550001 chrX_10550001 RAL-380 1918 chrX 10550862 10550888 chrX 10552329 10552355 hobo 4 1466 2.0 3.0 2.5 1.1 1493 chrX 10550862 intron spri - chrX 10551608 intron spri - chrX 10552355 intron spri - chrX_4_10550001 chrX_10550001 RAL-380 1919 chrX 10669265 10669294 chrX 10669340 10669371 6 72 1.5 3.0 2.2 1.9 106 chrX 10669265 intron X11Lbeta + chrX 10669318 intron X11Lbeta + chrX 10669371 intron X11Lbeta + chrX_6_10665001 chrX_10665001 RAL-380 1920 chrX 10686069 10686084 chrX 10691206 10691221 roo 6 5137 2.0 6.5 4.2 1.2 5152 chrX 10686069 intron X11Lbeta + chrX 10688645 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-380 1921 chrX 10772680 10772697 chrX 10772758 10772779 Tirant 5 82 3.5 2.5 3.0 1.2 99 chrX 10772680 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772779 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-380 1922 chrX 10876648 10876652 chrX 10876726 10876730 5 78 0.0 8.5 4.2 1.0 82 chrX 10876648 intron CG1637 - chrX 10876689 intron CG1637 - chrX 10876730 intron CG1637 - chrX_5_10875001 chrX_10875001 RAL-380 1923 chrX 10977395 10977424 chrX 10977543 10977574 4 147 3.5 1.5 2.5 1.1 179 chrX 10977395 intron CG42339 - chrX 10977484 intron CG42339 - chrX 10977574 intron CG42339 - chrX_4_10975001 chrX_10975001 RAL-380 1924 chrX 11009872 11009894 chrX 11009954 11009976 14 82 2.0 0.5 1.2 6.4 104 chrX 11009872 intron CG42339 - chrX 11009924 intron CG42339 - chrX 11009976 intron CG42339 - chrX_14_11005001 chrX_11005001 RAL-380 1925 chrX 11034303 11034315 chrX 11034631 11034644 4 328 4.0 4.0 4.0 0.8 341 chrX 11034303 intron CG42339 - chrX 11034474 intron CG42339 - chrX 11034644 intron CG42339 - chrX_4_11030001 chrX_11030001 RAL-380 1926 chrX 11205296 11205321 chrX 11205372 11205397 6 76 1.5 2.0 1.8 2.1 101 chrX 11205296 intergenic not near genes chrX 11205346 intergenic not near genes chrX 11205397 intergenic not near genes chrX_6_11205001 chrX_11205001 RAL-380 1927 chrX 11268570 11268591 chrX 11270059 11270084 hopper2 11 1489 2.5 3.0 2.8 2.9 1514 chrX 11268570 intron CG44422 - chrX 11269327 intron CG44422 - chrX 11270084 intron CG44422 - chrX_11_11265001 chrX_11265001 RAL-380 1928 chrX 11467410 11467427 chrX 11467477 11467482 6 69 0.5 4.0 2.2 1.9 72 chrX 11467410 intron CG43155 + chrX 11467446 intron CG43155 + chrX 11467482 intron CG43155 + chrX_6_11465001 chrX_11465001 RAL-380 1929 chrX 11501696 11501713 chrX 11501777 11501794 6 81 3.0 3.5 3.2 1.4 98 chrX 11501696 intron Drak + chrX 11501745 intron Drak + chrX 11501794 intron Drak + chrX_6_11500001 chrX_11500001 RAL-380 1930 chrX 11535040 11535045 chrX 11541510 11541512 Burdock 4 6469 7.5 6.5 7.0 0.5 6472 chrX 11535040 intron Drak + chrX 11538276 intron Drak + chrX 11541512 intron Drak + chrX_4_11535001 chrX_11535001 RAL-380 1931 chrX 11633418 11633446 chrX 11640472 11640496 297 6 7053 3.0 3.0 3.0 1.5 7078 chrX 11633418 intron Ptp10D + chrX 11636957 intron Ptp10D + chrX 11640496 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-380 1932 chrX 11651217 11651240 chrX 11651299 11651322 5 82 2.0 1.5 1.8 1.8 105 chrX 11651217 intron Ptp10D + chrX 11651270 intron Ptp10D + chrX 11651322 intron Ptp10D + chrX_5_11650001 chrX_11650001 RAL-380 1933 chrX 11669974 11669993 chrX 11670282 11670301 6 306 2.5 3.0 2.8 1.6 327 chrX 11669974 intron Ptp10D + chrX 11670138 intron Ptp10D + chrX 11670301 intron Ptp10D + chrX_6_11670001 chrX_11670001 RAL-380 1934 chrX 11804674 11804689 chrX 11804778 11804793 5 102 1.5 2.0 1.8 1.8 119 chrX 11804674 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804793 intron Hsc70-3 - chrX_5_11800001 chrX_11800001 RAL-380 1935 chrX 11936574 11936589 chrX 11936673 11936688 7 97 0.5 4.5 2.5 2.0 114 chrX 11936574 intron cac - chrX 11936631 intron cac - chrX 11936688 intron cac - chrX_7_11935001 chrX_11935001 RAL-380 1936 chrX 12038088 12038112 chrX 12038280 12038306 11 193 5.0 4.0 4.5 2.0 218 chrX 12038088 intergenic not near genes chrX 12038197 intergenic not near genes chrX 12038306 intergenic not near genes chrX_11_12035001 chrX_12035001 RAL-380 1937 chrX 12168151 12168164 chrX 12173578 12173606 I-element 6 5436 2.0 4.5 3.2 1.4 5455 chrX 12168151 intron Ten-a + chrX 12170878 intron Ten-a + chrX 12173606 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-380 1938 chrX 12176750 12176769 chrX 12176813 12176845 7 73 3.0 4.5 3.8 1.5 95 chrX 12176750 intron,3` UTR Ten-a +,CG1924 - chrX 12176798 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-380 1939 chrX 12202777 12202800 chrX 12202861 12202884 6 84 0.0 3.0 1.5 2.4 107 chrX 12202777 intron Ten-a + chrX 12202830 intron Ten-a + chrX 12202884 intron Ten-a + chrX_6_12200001 chrX_12200001 RAL-380 1940 chrX 12218047 12218073 chrX 12218126 12218152 6 77 1.0 4.0 2.5 1.7 105 chrX 12218047 intron Ten-a + chrX 12218100 intron Ten-a + chrX 12218152 intron Ten-a + chrX_6_12215001 chrX_12215001 RAL-380 1941 chrX 12271723 12271757 chrX 12271805 12271831 5 81 1.5 3.0 2.2 1.6 108 chrX 12271723 intron Ten-a + chrX 12271777 intron Ten-a + chrX 12271831 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-380 1942 chrX 12301955 12301986 chrX 12303261 12303292 X-element 7 1306 5.0 1.5 3.2 1.7 1337 chrX 12301955 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303292 intron Ten-a + chrX_7_12300001 chrX_12300001 RAL-380 1943 chrX 12303818 12303841 chrX 12303920 12303943 6 102 3.5 3.0 3.2 1.4 125 chrX 12303818 intron Ten-a + chrX 12303880 intron Ten-a + chrX 12303943 intron Ten-a + chrX_6_12300001 chrX_12300001 RAL-380 1944 chrX 12307429 12307461 chrX 12307518 12307550 5 89 3.0 3.0 3.0 1.2 121 chrX 12307429 intron Ten-a + chrX 12307490 intron Ten-a + chrX 12307550 intron Ten-a + chrX_5_12305001 chrX_12305001 RAL-380 1945 chrX 12350772 12350806 chrX 12350852 12350887 11 80 1.5 1.0 1.2 5.0 115 chrX 12350772 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350887 intergenic not near genes chrX_11_12350001 chrX_12350001 RAL-380 1946 chrX 12375493 12375504 chrX 12375590 12375602 5 98 3.0 3.0 3.0 1.2 109 chrX 12375493 intergenic Ir11a - chrX 12375548 intergenic Ir11a - chrX 12375602 exon Ir11a - chrX_5_12375001 chrX_12375001 RAL-380 1947 chrX 12752290 12752308 chrX 12752373 12752395 6 86 2.0 4.5 3.2 1.4 105 chrX 12752290 5` UTR CR44619 + chrX 12752342 5` UTR CR44619 + chrX 12752395 5` UTR CR44619 + chrX_6_12750001 chrX_12750001 RAL-380 1948 chrX 13020904 13020909 chrX 13021174 13021179 4 270 3.0 3.5 3.2 1.0 275 chrX 13020904 intron rad + chrX 13021042 intron rad + chrX 13021179 intron rad + chrX_4_13020001 chrX_13020001 RAL-380 1949 chrX 13161696 13161722 chrX 13161772 13161792 5 75 2.0 3.0 2.5 1.4 96 chrX 13161696 3` UTR CG12096 + chrX 13161744 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161792 3` UTR,3` UTR CG12096 +,CG34411 - chrX_5_13160001 chrX_13160001 RAL-380 1950 chrX 13172361 13172374 chrX 13172437 13172447 5 74 1.5 4.0 2.8 1.3 86 chrX 13172361 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172447 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-380 1951 chrX 13429471 13429493 chrX 13430620 13430641 jockey 8 1148 0.0 4.0 2.0 2.7 1170 chrX 13429471 intergenic not near genes chrX 13430056 intergenic not near genes chrX 13430641 intergenic not near genes chrX_8_13430001 chrX_13430001 RAL-380 1952 chrX 13463650 13463676 chrX 13469227 13469253 mdg3 6 5577 1.5 2.5 2.0 2.0 5603 chrX 13463650 intron Neto + chrX 13466452 intron Neto + chrX 13469253 intron Neto + chrX_6_13465001 chrX_13465001 RAL-380 1953 chrX 13485695 13485724 chrX 13485786 13485802 7 86 2.5 1.5 2.0 2.3 107 chrX 13485695 intron Neto + chrX 13485748 intron Neto + chrX 13485802 intron Neto + chrX_7_13485001 chrX_13485001 RAL-380 1954 chrX 13875958 13875981 chrX 13876042 13876064 7 83 0.0 0.0 0.0 7.0 106 chrX 13875958 intron mamo - chrX 13876011 intron mamo - chrX 13876064 intron mamo - chrX_7_13875001 chrX_13875001 RAL-380 1955 chrX 13975876 13975906 chrX 13975953 13975968 7 74 0.0 2.5 1.2 3.2 92 chrX 13975876 intron mamo - chrX 13975922 intron mamo - chrX 13975968 intron mamo - chrX_7_13975001 chrX_13975001 RAL-380 1956 chrX 14030779 14030784 chrX 14035363 14035371 copia 4 4586 0.0 8.0 4.0 0.8 4592 chrX 14030779 intergenic not near genes chrX 14033075 intergenic not near genes chrX 14035371 intergenic not near genes chrX_4_14030001 chrX_14030001 RAL-380 1957 chrX 14105021 14105056 chrX 14114171 14114203 roo 11 9143 3.0 2.5 2.8 2.9 9182 chrX 14105021 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_11_14105001 chrX_14105001 RAL-380 1958 chrX 14209464 14209488 chrX 14209555 14209579 4 89 2.5 4.5 3.5 0.9 115 chrX 14209464 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209579 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-380 1959 chrX 14333290 14333315 chrX 14333369 14333396 7 81 0.5 1.5 1.0 3.5 106 chrX 14333290 intron dpr8 + chrX 14333343 intron dpr8 + chrX 14333396 intron dpr8 + chrX_7_14330001 chrX_14330001 RAL-380 1960 chrX 14353458 14353468 chrX 14353539 14353551 7 82 1.0 8.5 4.8 1.2 93 chrX 14353458 intron dpr8 + chrX 14353504 intron dpr8 + chrX 14353551 intron dpr8 + chrX_7_14350001 chrX_14350001 RAL-380 1961 chrX 14395103 14395127 chrX 14395201 14395226 5 99 1.0 2.0 1.5 2.0 123 chrX 14395103 intron dpr8 + chrX 14395164 intron dpr8 + chrX 14395226 intron dpr8 + chrX_5_14395001 chrX_14395001 RAL-380 1962 chrX 14411259 14411289 chrX 14411336 14411348 7 75 1.0 1.5 1.2 3.2 89 chrX 14411259 intron dpr8 + chrX 14411304 intron dpr8 + chrX 14411348 intron dpr8 + chrX_7_14410001 chrX_14410001 RAL-380 1963 chrX 14531365 14531386 chrX 14531454 14531475 5 89 1.5 2.0 1.8 1.8 110 chrX 14531365 intergenic not near genes chrX 14531420 intergenic not near genes chrX 14531475 intergenic not near genes chrX_5_14530001 chrX_14530001 RAL-380 1964 chrX 14589702 14589707 chrX 14589927 14589947 pogo 4 237 0.5 0.5 0.5 2.7 245 chrX 14589702 intron CG9413 - chrX 14589824 intron CG9413 - chrX 14589947 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-380 1965 chrX 14597735 14597745 chrX 14597812 14597818 4 76 0.5 5.0 2.8 1.1 83 chrX 14597735 intron CG9413 - chrX 14597776 intron CG9413 - chrX 14597818 intron CG9413 - chrX_4_14595001 chrX_14595001 RAL-380 1966 chrX 14628182 14628217 chrX 14628272 14628301 12 88 2.0 1.0 1.5 4.8 119 chrX 14628182 intron NetA - chrX 14628242 intron NetA - chrX 14628301 intron NetA - chrX_12_14625001 chrX_14625001 RAL-380 1967 chrX 14636460 14636493 chrX 14641901 14641926 I-element 11 5439 2.5 0.5 1.5 4.4 5466 chrX 14636460 intron NetA - chrX 14639193 intron NetA - chrX 14641926 intron NetA - chrX_11_14635001 chrX_14635001 RAL-380 1968 chrX 14778026 14778059 chrX 14782823 14782856 Doc 8 4797 2.5 2.5 2.5 2.3 4830 chrX 14778026 intergenic CG5347 + chrX 14780441 intergenic not near genes chrX 14782856 intergenic Ag5r2 - chrX_8_14780001 chrX_14780001 RAL-380 1969 chrX 14818772 14818797 chrX 14823975 14824001 copia 9 5201 2.5 3.0 2.8 2.4 5229 chrX 14818772 intron rut - chrX 14821386 intron rut - chrX 14824001 intron rut - chrX_9_14820001 chrX_14820001 RAL-380 1970 chrX 14917854 14917883 chrX 14917975 14917982 8 115 21.0 17.0 19.0 0.4 128 chrX 14917854 intron,exon Flo2 +,Eo - chrX 14917918 intron,exon Flo2 +,Eo - chrX 14917982 intron,exon Flo2 +,Eo - chrX_8_14915001 chrX_14915001 RAL-380 1971 chrX 14936859 14936891 chrX 14946116 14946148 roo 9 9257 3.0 1.0 2.0 3.0 9289 chrX 14936859 intron pdgy - chrX 14941504 intron pdgy - chrX 14946148 intron pdgy - chrX_9_14940001 chrX_14940001 RAL-380 1972 chrX 14968091 14968101 chrX 14968170 14968180 4 78 1.0 3.5 2.2 1.2 89 chrX 14968091 intron eag + chrX 14968136 intron eag + chrX 14968180 intron eag + chrX_4_14965001 chrX_14965001 RAL-380 1973 chrX 15243170 15243433 chrX 15243405 15243515 8 101 0.0 0.0 0.0 8.0 345 chrX 15243170 intergenic not near genes chrX 15243342 intergenic not near genes chrX 15243515 intergenic PPYR1 - chrX_8_15240001 chrX_15240001 RAL-380 1974 chrX 15260063 15260093 chrX 15260349 15260380 14 285 2.0 2.0 2.0 4.7 317 chrX 15260063 intergenic not near genes chrX 15260222 intergenic not near genes chrX 15260380 intergenic not near genes chrX_14_15260001 chrX_15260001 RAL-380 1975 chrX 15273704 15273736 chrX 15274869 15274875 1360 7 1159 4.5 6.0 5.2 1.1 1171 chrX 15273704 intergenic not near genes chrX 15274290 intergenic not near genes chrX 15274875 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-380 1976 chrX 15413050 15413087 chrX 15417352 15417366 Juan 15 4298 4.0 4.5 4.2 2.9 4316 chrX 15413050 intron Cngl - chrX 15415208 intron Cngl - chrX 15417366 intron Cngl - chrX_15_15415001 chrX_15415001 RAL-380 1977 chrX 15519799 15519827 chrX 15519877 15519905 9 78 1.5 2.0 1.8 3.2 106 chrX 15519799 intron Ac13E - chrX 15519852 intron Ac13E - chrX 15519905 intron Ac13E - chrX_9_15515001 chrX_15515001 RAL-380 1978 chrX 15678044 15678067 chrX 15678115 15678144 13 75 2.0 2.5 2.2 4.1 100 chrX 15678044 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678144 intergenic CG12708 + chrX_13_15675001 chrX_15675001 RAL-380 1979 chrX 16074144 16074165 chrX 16074480 16074501 7 336 1.0 1.5 1.2 3.2 357 chrX 16074144 intergenic not near genes chrX 16074322 intergenic Tob - chrX 16074501 intergenic Tob - chrX_7_16070001 chrX_16070001 RAL-380 1980 chrX 16156710 16156733 chrX 16156816 16156838 4 106 1.5 2.5 2.0 1.3 128 chrX 16156710 intergenic not near genes chrX 16156774 intergenic not near genes chrX 16156838 intergenic not near genes chrX_4_16155001 chrX_16155001 RAL-380 1981 chrX 16354798 16354814 chrX 16355001 16355014 7 202 6.0 2.5 4.2 1.3 216 chrX 16354798 3` UTR sl + chrX 16354906 3` UTR sl + chrX 16355014 3` UTR sl + chrX_7_16350001 chrX_16350001 RAL-380 1982 chrX 16354817 16354828 chrX 16354999 16355029 10 200 4.0 1.5 2.8 2.6 212 chrX 16354817 3` UTR sl + chrX 16354923 3` UTR sl + chrX 16355029 3` UTR sl + chrX_10_16350001 chrX_16350001 RAL-380 1983 chrX 16404356 16404370 chrX 16404452 16404465 5 95 3.0 2.5 2.8 1.3 109 chrX 16404356 intron CG9981 - chrX 16404410 intron CG9981 - chrX 16404465 intron CG9981 - chrX_5_16400001 chrX_16400001 RAL-380 1984 chrX 16492648 16492678 chrX 16498225 16498254 mdg3 8 5577 1.5 3.5 2.5 2.3 5606 chrX 16492648 intron para - chrX 16495451 intron para - chrX 16498254 intron para - chrX_8_16495001 chrX_16495001 RAL-380 1985 chrX 16519936 16519968 chrX 16520022 16520044 5 84 0.5 2.0 1.2 2.3 108 chrX 16519936 intron para - chrX 16519990 intron para - chrX 16520044 intron para - chrX_5_16515001 chrX_16515001 RAL-380 1986 chrX 16529429 16529438 chrX 16529540 16529548 4 111 0.5 5.5 3.0 1.0 119 chrX 16529429 intron para - chrX 16529488 intron para - chrX 16529548 intron para - chrX_4_16525001 chrX_16525001 RAL-380 1987 chrX 16570872 16570899 chrX 16570952 16570973 5 78 1.5 3.0 2.2 1.6 101 chrX 16570872 intron CanA-14F - chrX 16570922 intron CanA-14F - chrX 16570973 intron CanA-14F - chrX_5_16570001 chrX_16570001 RAL-380 1988 chrX 16623493 16623504 chrX 16623579 16623579 4 82 4.5 0.0 2.2 1.2 86 chrX 16623493 intergenic not near genes chrX 16623536 intergenic Rok - chrX 16623579 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-380 1989 chrX 16841407 16841415 chrX 16841485 16841493 5 78 4.5 1.5 3.0 1.2 86 chrX 16841407 exon RSG7 - chrX 16841450 intron RSG7 - chrX 16841493 intron RSG7 - chrX_5_16840001 chrX_16840001 RAL-380 1990 chrX 16981088 16981110 chrX 16981176 16981198 4 85 2.5 2.5 2.5 1.1 110 chrX 16981088 intron CG45002 - chrX 16981143 intron CG45002 - chrX 16981198 intron CG45002 - chrX_4_16980001 chrX_16980001 RAL-380 1991 chrX 17011982 17012000 chrX 17012048 17012057 7 71 2.5 4.0 3.2 1.7 75 chrX 17011982 intron CG45002 - chrX 17012020 intron CG45002 - chrX 17012057 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-380 1992 chrX 17089607 17089617 chrX 17089723 17089743 4 123 4.0 1.5 2.8 1.1 136 chrX 17089607 intergenic not near genes chrX 17089675 intergenic not near genes chrX 17089743 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-380 1993 chrX 17122639 17122670 chrX 17122729 17122759 5 90 4.5 4.5 4.5 0.9 120 chrX 17122639 intron CG5004 + chrX 17122699 intron CG5004 + chrX 17122759 intron CG5004 + chrX_5_17120001 chrX_17120001 RAL-380 1994 chrX 17195209 17195226 chrX 17200295 17200309 flea 7 5085 2.5 1.0 1.8 2.5 5100 chrX 17195209 3` UTR baz + chrX 17197759 3` UTR baz + chrX 17200309 3` UTR baz + chrX_7_17195001 chrX_17195001 RAL-380 1995 chrX 17229957 17229966 chrX 17230060 17230069 5 103 6.0 1.5 3.8 1.0 112 chrX 17229957 intergenic CG10597 - chrX 17230013 intergenic CG10597 - chrX 17230069 intergenic CG10597 - chrX_5_17230001 chrX_17230001 RAL-380 1996 chrX 17282875 17282909 chrX 17282952 17282983 10 70 4.5 1.0 2.8 2.6 108 chrX 17282875 intron CG5445 + chrX 17282929 5` UTR CG5445 + chrX 17282983 intron CG5445 + chrX_10_17280001 chrX_17280001 RAL-380 1997 chrX 17352591 17352611 chrX 17352693 17352714 9 102 0.0 2.0 1.0 4.5 123 chrX 17352591 intergenic not near genes chrX 17352652 intergenic not near genes chrX 17352714 intergenic not near genes chrX_9_17350001 chrX_17350001 RAL-380 1998 chrX 17502350 17502363 chrX 17502430 17502443 4 80 2.5 3.0 2.8 1.1 93 chrX 17502350 intron CG43658 - chrX 17502396 intron CG43658 - chrX 17502443 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-380 1999 chrX 17708846 17708859 chrX 17708924 17708938 6 79 0.0 5.5 2.8 1.6 92 chrX 17708846 intron CG8173 - chrX 17708892 intron CG8173 - chrX 17708938 intron CG8173 - chrX_6_17705001 chrX_17705001 RAL-380 2000 chrX 17731119 17731132 chrX 17731195 17731208 4 76 1.5 3.0 2.2 1.2 89 chrX 17731119 intron CG42684 + chrX 17731164 intron CG42684 + chrX 17731208 intron CG42684 + chrX_4_17730001 chrX_17730001 RAL-380 2001 chrX 17745343 17745378 chrX 17745477 17745512 13 128 4.0 5.5 4.8 2.2 169 chrX 17745343 intron CG42684 + chrX 17745428 intron CG42684 + chrX 17745512 intron CG42684 + chrX_13_17745001 chrX_17745001 RAL-380 2002 chrX 17792967 17792984 chrX 17796248 17796280 flea 5 3293 1.5 1.0 1.2 2.3 3313 chrX 17792967 intron OdsH + chrX 17794624 intron OdsH + chrX 17796280 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-380 2003 chrX 18429494 18429527 chrX 18434805 18434838 Transpac 7 5310 4.5 2.0 3.2 1.7 5344 chrX 18429494 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434838 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-380 2004 chrX 18513922 18513934 chrX 18514115 18514130 5 195 0.0 4.5 2.2 1.6 208 chrX 18513922 intron CG6470 - chrX 18514026 intron CG6470 - chrX 18514130 intron CG6470 - chrX_5_18510001 chrX_18510001 RAL-380 2005 chrX 18576011 18576034 chrX 18576246 18576268 10 234 3.0 1.0 2.0 3.3 257 chrX 18576011 intergenic not near genes chrX 18576140 intergenic not near genes chrX 18576268 intergenic not near genes chrX_10_18575001 chrX_18575001 RAL-380 2006 chrX 18637249 18637277 chrX 18637373 18637388 5 121 2.5 5.0 3.8 1.0 139 chrX 18637249 intron Rip11 - chrX 18637318 intron Rip11 - chrX 18637388 intron Rip11 - chrX_5_18635001 chrX_18635001 RAL-380 2007 chrX 18645016 18645046 chrX 18645114 18645144 11 98 1.5 4.5 3.0 2.8 128 chrX 18645016 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645144 intron Rip11 - chrX_11_18645001 chrX_18645001 RAL-380 2008 chrX 18896518 18896545 chrX 18896629 18896656 10 111 1.5 1.5 1.5 4.0 138 chrX 18896518 3` UTR CG7349 + chrX 18896587 intergenic CG7349 + chrX 18896656 intergenic CG7349 + chrX_10_18895001 chrX_18895001 RAL-380 2009 chrX 18947510 18947525 chrX 18947602 18947618 5 93 2.0 3.5 2.8 1.3 108 chrX 18947510 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947618 intron CG43759 + chrX_5_18945001 chrX_18945001 RAL-380 2010 chrX 19020612 19020622 chrX 19020690 19020694 4 76 0.0 4.5 2.2 1.2 82 chrX 19020612 intron CG43759 + chrX 19020653 intron CG43759 + chrX 19020694 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-380 2011 chrX 19037971 19037995 chrX 19038100 19038106 6 126 5.5 2.0 3.8 1.2 135 chrX 19037971 intergenic not near genes chrX 19038038 intergenic not near genes chrX 19038106 intergenic not near genes chrX_6_19035001 chrX_19035001 RAL-380 2012 chrX 19048222 19048252 chrX 19048312 19048341 4 90 3.0 3.0 3.0 1.0 119 chrX 19048222 intergenic not near genes chrX 19048282 intergenic not near genes chrX 19048341 intergenic not near genes chrX_4_19045001 chrX_19045001 RAL-380 2013 chrX 19060408 19060437 chrX 19065191 19065221 Doc 5 4784 1.0 2.5 1.8 1.8 4813 chrX 19060408 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065221 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-380 2014 chrX 19080333 19080357 chrX 19080432 19080463 7 104 1.0 4.5 2.8 1.8 130 chrX 19080333 intergenic not near genes chrX 19080398 intergenic not near genes chrX 19080463 intergenic not near genes chrX_7_19080001 chrX_19080001 RAL-380 2015 chrX 19084099 19084120 chrX 19084219 19084239 6 120 0.0 0.0 0.0 6.0 140 chrX 19084099 intergenic CR45503 + chrX 19084169 intergenic CR45503 + chrX 19084239 intergenic CR45503 + chrX_6_19080001 chrX_19080001 RAL-380 2016 chrX 19099657 19099662 chrX 19099739 19099745 4 82 6.0 2.0 4.0 0.8 88 chrX 19099657 intergenic not near genes chrX 19099701 intergenic not near genes chrX 19099745 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-380 2017 chrX 19099664 19099686 chrX 19099737 19099767 6 81 0.5 2.0 1.2 2.7 103 chrX 19099664 intergenic not near genes chrX 19099716 intergenic not near genes chrX 19099767 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-380 2018 chrX 19136566 19136584 chrX 19143477 19143503 412 4 6917 2.0 2.0 2.0 1.3 6937 chrX 19136566 intergenic not near genes chrX 19140034 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-380 2019 chrX 19200003 19200034 chrX 19200085 19200113 4 79 2.0 1.0 1.5 1.6 110 chrX 19200003 intron CG7990 - chrX 19200058 intron CG7990 - chrX 19200113 intron CG7990 - chrX_4_19200001 chrX_19200001 RAL-380 2020 chrX 13057298 13057300 chrX 19242812 19242814 21 6185514 13.0 7.5 10.2 1.9 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_21_16150001 chrX_16150001 RAL-380 2021 chrX 19310617 19310644 chrX 19310883 19310902 5 262 1.0 3.0 2.0 1.7 285 chrX 19310617 3` UTR out - chrX 19310760 3` UTR out - chrX 19310902 3` UTR out - chrX_5_19310001 chrX_19310001 RAL-380 2022 chrX 19330461 19330477 chrX 19330581 19330597 4 120 1.0 0.5 0.8 2.2 136 chrX 19330461 intron nAChRalpha7 - chrX 19330529 intron nAChRalpha7 - chrX 19330597 intron nAChRalpha7 - chrX_4_19330001 chrX_19330001 RAL-380 2023 chrX 19356986 19357015 chrX 19358427 19358456 NOF 9 1441 3.5 1.5 2.5 2.6 1470 chrX 19356986 intron kek5 + chrX 19357721 intron kek5 + chrX 19358456 intron kek5 + chrX_9_19355001 chrX_19355001 RAL-380 2024 chrX 19380158 19380188 chrX 19380399 19380427 pogo 6 240 4.0 1.5 2.8 1.6 269 chrX 19380158 intron kek5 + chrX 19380292 intron kek5 + chrX 19380427 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-380 2025 chrX 19472120 19472156 chrX 19472689 19472726 jockey 10 563 4.5 2.5 3.5 2.2 606 chrX 19472120 intergenic kek5 + chrX 19472423 intergenic not near genes chrX 19472726 intergenic not near genes chrX_10_19470001 chrX_19470001 RAL-380 2026 chrX 19500563 19500751 chrX 19500640 19500838 19 81 0.0 0.5 0.2 15.8 275 chrX 19500563 intron,intron CG14200 +,Pfrx + chrX 19500700 intron,intron CG14200 +,Pfrx + chrX 19500838 intron,intron CG14200 +,Pfrx + chrX_19_19500001 chrX_19500001 RAL-380 2027 chrX 19762588 19762619 chrX 19762668 19762696 6 79 2.0 1.0 1.5 2.4 108 chrX 19762588 5` UTR CG12702 - chrX 19762642 5` UTR CG12702 - chrX 19762696 5` UTR CG12702 - chrX_6_19760001 chrX_19760001 RAL-380 2028 chrX 19881470 19881476 chrX 19881551 19881554 4 80 5.0 5.0 5.0 0.7 84 chrX 19881470 intron Hers + chrX 19881512 intron Hers + chrX 19881554 intron Hers + chrX_4_19880001 chrX_19880001 RAL-380 2029 chrX 19884090 19884122 chrX 19884166 19884198 4 72 3.0 3.0 3.0 1.0 108 chrX 19884090 intron Hers + chrX 19884144 intron Hers + chrX 19884198 intron Hers + chrX_4_19880001 chrX_19880001 RAL-380 2030 chrX 19892809 19892816 chrX 19892894 19892896 4 84 2.0 1.0 1.5 1.6 87 chrX 19892809 intron Hers + chrX 19892852 intron Hers + chrX 19892896 intron Hers + chrX_4_19890001 chrX_19890001 RAL-380 2031 chrX 19897381 19897408 chrX 19897458 19897476 10 76 5.0 2.0 3.5 2.2 95 chrX 19897381 intron Hers + chrX 19897428 intron Hers + chrX 19897476 intron Hers + chrX_10_19895001 chrX_19895001 RAL-380 2032 chrX 19992416 19992436 chrX 19992492 19992510 7 75 3.5 9.0 6.2 1.0 94 chrX 19992416 intergenic not near genes chrX 19992463 intergenic not near genes chrX 19992510 intergenic not near genes chrX_7_19990001 chrX_19990001 RAL-380 2033 chrX 20041555 20041565 chrX 20041618 20041645 5 77 3.5 2.0 2.8 1.3 90 chrX 20041555 intron Dop2R - chrX 20041600 intron Dop2R - chrX 20041645 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-380 2034 chrX 20065803 20065825 chrX 20065882 20065904 7 79 3.0 1.0 2.0 2.3 101 chrX 20065803 intergenic not near genes chrX 20065854 intergenic not near genes chrX 20065904 intergenic not near genes chrX_7_20065001 chrX_20065001 RAL-380 2035 chrX 20124086 20124110 chrX 20124225 20124249 5 139 2.0 0.5 1.2 2.3 163 chrX 20124086 intron CG34331 + chrX 20124168 intron CG34331 + chrX 20124249 intron CG34331 + chrX_5_20120001 chrX_20120001 RAL-380 2036 chrX 20150384 20150395 chrX 20150473 20150484 5 88 0.5 5.0 2.8 1.3 100 chrX 20150384 intron CG9572 + chrX 20150434 intron CG9572 + chrX 20150484 intron CG9572 + chrX_5_20150001 chrX_20150001 RAL-380 2037 chrX 20232341 20232375 chrX 20232429 20232461 10 88 1.5 1.0 1.2 4.5 120 chrX 20232341 intron sw - chrX 20232401 intron sw - chrX 20232461 intron sw - chrX_10_20230001 chrX_20230001 RAL-380 2038 chrX 20312880 20312896 chrX 20312958 20312968 6 76 5.5 2.0 3.8 1.2 88 chrX 20312880 intron CG1504 - chrX 20312924 intron CG1504 - chrX 20312968 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-380 2039 chrX 20377331 20377338 chrX 20378798 20378804 hobo 5 1467 5.5 7.0 6.2 0.7 1473 chrX 20377331 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378804 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-380 2040 chrX 20443173 20443205 chrX 20443249 20443281 4 75 4.0 1.5 2.8 1.1 108 chrX 20443173 exon CG1695 + chrX 20443227 intron CG1695 + chrX 20443281 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-380 2041 chrX 20575170 20575189 chrX 20575241 20575268 7 77 1.5 3.0 2.2 2.2 98 chrX 20575170 intergenic CG42580 + chrX 20575219 intergenic not near genes chrX 20575268 intergenic not near genes chrX_7_20575001 chrX_20575001 RAL-380 2042 chrX 20578080 20578105 chrX 20578159 20578183 5 78 1.0 2.5 1.8 1.8 103 chrX 20578080 intergenic not near genes chrX 20578132 intergenic not near genes chrX 20578183 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-380 2043 chrX 20583741 20583756 chrX 20583899 20583904 4 160 1.0 0.5 0.8 2.2 163 chrX 20583741 intergenic not near genes chrX 20583822 intergenic not near genes chrX 20583904 intergenic not near genes chrX_4_20580001 chrX_20580001 RAL-380 2044 chrX 20810721 20810733 chrX 20810798 20810811 4 78 3.5 3.0 3.2 1.0 90 chrX 20810721 intron shakB - chrX 20810766 intron shakB - chrX 20810811 intron shakB - chrX_4_20810001 chrX_20810001 RAL-380 2045 chrX 20860262 20860281 chrX 20860345 20860377 5 95 1.5 2.5 2.0 1.7 115 chrX 20860262 intron shakB - chrX 20860320 intron shakB - chrX 20860377 intron shakB - chrX_5_20860001 chrX_20860001 RAL-380 2046 chrX 20940717 20940756 chrX 20942186 20942225 hobo 13 1466 2.5 3.5 3.0 3.2 1508 chrX 20940717 intergenic not near genes chrX 20941471 intergenic not near genes chrX 20942225 intergenic not near genes chrX_13_20940001 chrX_20940001 RAL-380 2047 chrX 20981029 20981046 chrX 20981132 20981149 4 103 3.0 3.0 3.0 1.0 120 chrX 20981029 intergenic not near genes chrX 20981089 intergenic not near genes chrX 20981149 intergenic not near genes chrX_4_20980001 chrX_20980001 RAL-380 2048 chrX 21022256 21022264 chrX 21022424 21022433 4 169 13.0 3.0 8.0 0.4 177 chrX 21022256 intergenic not near genes chrX 21022344 intergenic not near genes chrX 21022433 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-380 2049 chrX 21042555 21042590 chrX 21045340 21045375 10 2788 27.5 24.5 26.0 0.4 2820 chrX 21042555 exon Mgstl + chrX 21043965 exon,3` UTR Mgstl +,CR44431 - chrX 21045375 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-380 2050 chrX 21061871 21061895 chrX 21062356 21062381 roo 9 485 1.0 1.0 1.0 4.5 510 chrX 21061871 intron bves + chrX 21062126 intron bves + chrX 21062381 intron,3` UTR bves +,CG32512 - chrX_9_21060001 chrX_21060001 RAL-380 2051 chrX 21086129 21086164 chrX 21087157 21087167 jockey 6 1024 3.0 2.0 2.5 1.7 1038 chrX 21086129 intergenic not near genes chrX 21086648 intergenic not near genes chrX 21087167 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-380 2052 chrX 21254650 21254671 chrX 21255565 21255566 hopper2 5 910 2.0 0.5 1.2 2.3 916 chrX 21254650 intron CG32521 - chrX 21255108 intron CG32521 - chrX 21255566 intron CG32521 - chrX_5_21255001 chrX_21255001 RAL-380 2053 chrX 21264730 21264762 chrX 21264806 21264838 12 75 3.0 2.5 2.8 3.2 108 chrX 21264730 intron CG32521 - chrX 21264784 intron CG32521 - chrX 21264838 intron CG32521 - chrX_12_21260001 chrX_21260001 RAL-380 2054 chrX 21328123 21328136 chrX 21328234 21328247 4 111 1.5 1.0 1.2 1.8 124 chrX 21328123 3` UTR CG1486 + chrX 21328185 intergenic CG1486 +,tty - chrX 21328247 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-380 2055 chrX 21419213 21419226 chrX 21419298 21419311 6 85 2.5 2.5 2.5 1.7 98 chrX 21419213 intergenic not near genes chrX 21419262 intergenic not near genes chrX 21419311 intergenic not near genes chrX_6_21415001 chrX_21415001 RAL-380 2056 chrX 21443458 21443478 chrX 21443636 21443654 5 177 2.0 3.0 2.5 1.4 196 chrX 21443458 intron CG42343 - chrX 21443556 intron CG42343 - chrX 21443654 intron CG42343 - chrX_5_21440001 chrX_21440001 RAL-380 2057 chrX 21458691 21458728 chrX 21464126 21464164 Ivk 10 5436 0.0 3.5 1.8 3.6 5473 chrX 21458691 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464164 intergenic not near genes chrX_10_21460001 chrX_21460001 RAL-380 2058 chrX 21668256 21668288 chrX 21668340 21668371 9 85 2.0 0.0 1.0 4.5 115 chrX 21668256 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668371 intergenic not near genes chrX_9_21665001 chrX_21665001 RAL-380 2059 chrX 22448274 22448286 chrX 22448413 22448425 4 139 2.5 0.5 1.5 1.6 151 chrX 22448274 intron CG14615 - chrX 22448350 intron CG14615 - chrX 22448425 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-380 2060 chrX 22564556 22564569 chrX 22575128 22575149 jockey 6 10574 10.0 2.5 6.2 0.8 10593 chrX 22564556 intergenic not near genes chrX 22569852 intergenic not near genes chrX 22575149 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-380 2061 chrX 22697501 22697522 chrX 22701798 22701815 Juan 8 4296 1.0 4.0 2.5 2.3 4314 chrX 22697501 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701815 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-380 2062 chrX 22811993 22812004 chrX 22816764 22816776 F-element 4 4772 6.5 3.5 5.0 0.7 4783 chrX 22811993 intergenic CG12446 - chrX 22814384 intergenic not near genes chrX 22816776 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-380 2063 chrX 22922519 22922550 chrX 22922599 22922630 7 80 1.5 2.5 2.0 2.3 111 chrX 22922519 intergenic not near genes chrX 22922574 intergenic not near genes chrX 22922630 intergenic not near genes chrX_7_22920001 chrX_22920001 RAL-380 2064 chrX 22967402 22967514 chrX 23154553 23154690 diver 8 187164 4.5 8.5 6.5 1.1 187288 chrX 22967402 intergenic not near genes chrX 23061046 intergenic not near genes chrX 23154690 intergenic not near genes chrX_8_23060001 chrX_23060001 RAL-380 2065 chrX 22996320 22996340 chrX 23003552 23003573 roo 10 7233 2.0 3.5 2.8 2.6 7253 chrX 22996320 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_10_22995001 chrX_22995001 RAL-380