SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47447	47486	chr2L	52572	52584	jockey	20	5121	8.5	6.0	7.2	2.4	5137	chr2L	47447	intron	Cda5 -	chr2L	50016	intron	Cda5 -	chr2L	52584	intron	Cda5 -	chr2L_20_50001	chr2L_50001	RAL-377
16	chr2L	347871	347919	chr2L	355387	355439	blood	18	7519	4.0	4.0	4.0	3.6	7568	chr2L	347871	3` UTR	Plc21C +	chr2L	351655	intron	Plc21C +	chr2L	355439	3` UTR	Plc21C +	chr2L_18_350001	chr2L_350001	RAL-377
21	chr2L	686912	686938	chr2L	695957	695998	roo	7	9058	1.5	3.5	2.5	2.0	9086	chr2L	686912	intron	ds -	chr2L	691455	intron	ds -	chr2L	695998	intron	ds -	chr2L_7_690001	chr2L_690001	RAL-377
24	chr2L	770454	770491	chr2L	772249	772272	Bari1	6	1791	2.0	6.5	4.2	1.2	1818	chr2L	770454	intergenic	not near genes	chr2L	771363	intergenic	not near genes	chr2L	772272	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-377
35	chr2L	976858	976889	chr2L	984514	984545	roo	13	7656	11.5	2.0	6.8	1.7	7687	chr2L	976858	intergenic	not near genes	chr2L	980702	intergenic	not near genes	chr2L	984545	intergenic	not near genes	chr2L_13_980001	chr2L_980001	RAL-377
36	chr2L	996707	996745	chr2L	1005826	1005864	roo	15	9116	1.0	5.5	3.2	3.6	9157	chr2L	996707	intergenic	not near genes	chr2L	1001286	intergenic	not near genes	chr2L	1005864	intergenic	not near genes	chr2L_15_1000001	chr2L_1000001	RAL-377
45	chr2L	1220108	1220160	chr2L	1227594	1227645	blood	15	7484	7.5	2.5	5.0	2.5	7537	chr2L	1220108	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227645	intron	CG42329 +	chr2L_15_1220001	chr2L_1220001	RAL-377
51	chr2L	1301749	1301781	chr2L	1302306	1302340	gypsy	4	558	0.5	9.0	4.8	0.7	591	chr2L	1301749	intergenic	not near genes	chr2L	1302044	intergenic	not near genes	chr2L	1302340	intergenic	not near genes	chr2L_4_1300001	chr2L_1300001	RAL-377
54	chr2L	1570671	1570717	chr2L	1573563	1573608	F-element	11	2892	3.5	2.0	2.8	2.9	2937	chr2L	1570671	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573608	intron	haf +	chr2L_11_1570001	chr2L_1570001	RAL-377
60	chr2L	1678938	1678999	chr2L	1686441	1686484	blood	14	7487	3.5	4.5	4.0	2.8	7546	chr2L	1678938	intron	chinmo +	chr2L	1682711	intron	chinmo +	chr2L	1686484	intron	chinmo +	chr2L_14_1680001	chr2L_1680001	RAL-377
61	chr2L	1711347	1711385	chr2L	1711680	1711729	mdg3	10	338	5.5	4.0	4.8	1.7	382	chr2L	1711347	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711538	3` UTR	frtz -	chr2L	1711729	3` UTR	frtz -	chr2L_10_1710001	chr2L_1710001	RAL-377
75	chr2L	2100376	2100379	chr2L	2109529	2109547	roo	5	9165	8.0	3.5	5.8	0.7	9171	chr2L	2100376	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109547	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-377
76	chr2L	2100380	2100386	chr2L	2109525	2109555	roo	6	9161	6.5	2.5	4.5	1.1	9175	chr2L	2100380	intron	dpr3 -	chr2L	2104968	intron	dpr3 -	chr2L	2109555	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-377
77	chr2L	2100387	2100396	chr2L	2109524	2109567	roo	6	9162	5.0	2.5	3.8	1.2	9180	chr2L	2100387	intron	dpr3 -	chr2L	2104977	intron	dpr3 -	chr2L	2109567	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-377
86	chr2L	2565537	2565564	chr2L	2571625	2571652	297	9	6089	2.5	7.0	4.8	1.6	6115	chr2L	2565537	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571652	exon	Cyp309a2 -	chr2L_9_2565001	chr2L_2565001	RAL-377
91	chr2L	2661225	2661229	chr2L	2663033	2663075	I-element	4	1825	0.0	0.5	0.2	3.3	1850	chr2L	2661225	intergenic	not near genes	chr2L	2662150	intergenic	not near genes	chr2L	2663075	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-377
96	chr2L	2772596	2772625	chr2L	2779194	2779224	297	9	6600	6.5	4.5	5.5	1.4	6628	chr2L	2772596	3` UTR	Syt1 -	chr2L	2775910	intron	Syt1 -	chr2L	2779224	3` UTR	Syt1 -	chr2L_9_2775001	chr2L_2775001	RAL-377
106	chr2L	3072990	3073065	chr2L	3078259	3078288	copia	4	5234	1.0	4.5	2.8	1.1	5298	chr2L	3072990	intron	toc -	chr2L	3075639	intron	toc -	chr2L	3078288	intron	toc -	chr2L_4_3075001	chr2L_3075001	RAL-377
114	chr2L	3202737	3202772	chr2L	3210186	3210221	mdg1	8	7449	3.0	5.0	4.0	1.6	7484	chr2L	3202737	intergenic	not near genes	chr2L	3206479	intergenic	not near genes	chr2L	3210221	intergenic	CR45336 +	chr2L_8_3205001	chr2L_3205001	RAL-377
115	chr2L	3251477	3251519	chr2L	3259062	3259104	springer	13	7585	3.5	3.5	3.5	2.9	7627	chr2L	3251477	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259104	intergenic	not near genes	chr2L_13_3255001	chr2L_3255001	RAL-377
119	chr2L	3388583	3388626	chr2L	3388839	3388887	pogo	16	260	5.5	3.5	4.5	2.9	304	chr2L	3388583	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388887	intergenic	CG42460 -,CR44791 +	chr2L_16_3385001	chr2L_3385001	RAL-377
128	chr2L	3649767	3649811	chr2L	3654990	3655034	copia	12	5222	5.0	3.0	4.0	2.4	5267	chr2L	3649767	intron	for -	chr2L	3652400	intron	for -	chr2L	3655034	intron	for -	chr2L_12_3650001	chr2L_3650001	RAL-377
146	chr2L	4066030	4066064	chr2L	4068875	4068907	Juan	4	2844	4.0	5.0	4.5	0.7	2877	chr2L	4066030	intron	ed +	chr2L	4067468	intron	ed +	chr2L	4068907	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-377
150	chr2L	4181293	4181302	chr2L	4183945	4183954	Burdock	4	2652	4.0	9.5	6.8	0.5	2661	chr2L	4181293	intergenic	not near genes	chr2L	4182624	intergenic	not near genes	chr2L	4183954	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-377
159	chr2L	4601686	4601735	chr2L	4609147	4609196	mdg1	10	7460	5.5	4.0	4.8	1.7	7510	chr2L	4601686	intron	dp -	chr2L	4605441	intron	dp -	chr2L	4609196	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-377
161	chr2L	4661826	4661854	chr2L	4669426	4669454	opus	5	7597	5.5	5.5	5.5	0.8	7628	chr2L	4661826	intergenic	not near genes	chr2L	4665640	intergenic	not near genes	chr2L	4669454	intergenic	not near genes	chr2L_5_4665001	chr2L_4665001	RAL-377
174	chr2L	4918151	4918195	chr2L	4923244	4923288	jockey	7	5093	3.5	3.0	3.2	1.7	5137	chr2L	4918151	intron	hoe1 -	chr2L	4920720	intron	hoe1 -	chr2L	4923288	intron	hoe1 -	chr2L_7_4920001	chr2L_4920001	RAL-377
176	chr2L	4953496	4953535	chr2L	4953757	4953796	pogo	9	261	5.0	5.0	5.0	1.5	300	chr2L	4953496	intergenic	Jon25Bii -	chr2L	4953646	intergenic	not near genes	chr2L	4953796	intergenic	Jon25Bi -	chr2L_9_4950001	chr2L_4950001	RAL-377
188	chr2L	5342796	5342800	chr2L	5345158	5345163	Doc	4	2362	0.5	3.5	2.0	1.3	2367	chr2L	5342796	intergenic	not near genes	chr2L	5343980	intergenic	not near genes	chr2L	5345163	intergenic	not near genes	chr2L_4_5340001	chr2L_5340001	RAL-377
207	chr2L	5827693	5827741	chr2L	5836721	5836763	roo	14	9024	4.0	3.0	3.5	3.1	9070	chr2L	5827693	intron	TrissinR +	chr2L	5832228	intron	TrissinR +	chr2L	5836763	intron	TrissinR +	chr2L_14_5830001	chr2L_5830001	RAL-377
224	chr2L	6279625	6279653	chr2L	6279721	6279752	INE-1	5	98	14.5	11.0	12.8	0.4	127	chr2L	6279625	intron	Ddr +	chr2L	6279688	intron	Ddr +	chr2L	6279752	intron	Ddr +	chr2L_5_6275001	chr2L_6275001	RAL-377
229	chr2L	6363129	6363174	chr2L	6366071	6366116	Burdock	12	2940	7.0	5.0	6.0	1.7	2987	chr2L	6363129	intergenic	not near genes	chr2L	6364622	intergenic	not near genes	chr2L	6366116	intergenic	not near genes	chr2L_12_6360001	chr2L_6360001	RAL-377
230	chr2L	6426836	6426886	chr2L	6445116	6445166	roo	18	18279	7.0	7.5	7.2	2.2	18330	chr2L	6426836	3` UTR	CG9527 -	chr2L	6436001	intron	CG9527 -	chr2L	6445166	exon	CG9527 -	chr2L_18_6435001	chr2L_6435001	RAL-377
244	chr2L	6876772	6876798	chr2L	6882971	6883003	diver	4	6206	5.5	5.5	5.5	0.6	6231	chr2L	6876772	intron	Nlg2 +	chr2L	6879888	intron	Nlg2 +	chr2L	6883003	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-377
258	chr2L	7343308	7343356	chr2L	7350444	7350492	roo	7	7134	3.0	3.5	3.2	1.7	7184	chr2L	7343308	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350492	intron	Wnt6 +	chr2L_7_7345001	chr2L_7345001	RAL-377
265	chr2L	7579177	7579208	chr2L	7579387	7579419	BS	8	211	4.5	0.5	2.5	2.3	242	chr2L	7579177	intergenic	RapGAP1 -	chr2L	7579298	intergenic	RapGAP1 -	chr2L	7579419	intergenic	RapGAP1 -	chr2L_8_7575001	chr2L_7575001	RAL-377
273	chr2L	7959029	7959072	chr2L	7960460	7960504	pogo	5	1431	10.0	9.5	9.8	0.5	1475	chr2L	7959029	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960504	intron	Snoo -	chr2L_5_7955001	chr2L_7955001	RAL-377
275	chr2L	8013601	8013613	chr2L	8018820	8018837	copia	4	5223	12.0	0.5	6.2	0.6	5236	chr2L	8013601	intron	Tg +	chr2L	8016219	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-377
276	chr2L	8018815	8018837	chr2L	8023619	8023641	Doc	13	4804	0.0	12.5	6.2	1.8	4826	chr2L	8018815	intron	Tg +	chr2L	8021228	intron	Tg +	chr2L	8023641	intron	Tg +	chr2L_13_8020001	chr2L_8020001	RAL-377
290	chr2L	8452401	8452433	chr2L	8461592	8461624	roo	13	9191	9.5	9.0	9.2	1.3	9223	chr2L	8452401	intron	fu12 -	chr2L	8457012	intron	fu12 -	chr2L	8461624	intron	fu12 -	chr2L_13_8455001	chr2L_8455001	RAL-377
298	chr2L	8594445	8594493	chr2L	8601519	8601566	297	7	7074	4.0	0.0	2.0	2.3	7121	chr2L	8594445	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598006	intron	Sema-1a +	chr2L	8601566	intron	Sema-1a +	chr2L_7_8595001	chr2L_8595001	RAL-377
305	chr2L	8723099	8723146	chr2L	8731496	8731543	Tirant	11	8397	3.5	5.0	4.2	2.1	8444	chr2L	8723099	intron	raw -	chr2L	8727321	intron	raw -	chr2L	8731543	intron	raw -	chr2L_11_8725001	chr2L_8725001	RAL-377
314	chr2L	9000259	9000311	chr2L	9007789	9007841	roo	21	7529	5.5	0.0	2.8	5.5	7582	chr2L	9000259	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007841	intergenic	not near genes	chr2L_21_9000001	chr2L_9000001	RAL-377
321	chr2L	9217959	9217996	chr2L	9222760	9222803	Doc	16	4806	3.5	6.5	5.0	2.7	4844	chr2L	9217959	intron	tai +	chr2L	9220381	intron	tai +	chr2L	9222803	intron	tai +	chr2L_16_9220001	chr2L_9220001	RAL-377
333	chr2L	9393480	9393526	chr2L	9396467	9396508	jockey	17	2987	3.0	4.0	3.5	3.8	3028	chr2L	9393480	intron	Shawl -	chr2L	9394994	intron	Shawl -	chr2L	9396508	intron	Shawl -	chr2L_17_9390001	chr2L_9390001	RAL-377
360	chr2L	9973707	9973756	chr2L	9980846	9980859	HMS-Beagle	10	7131	2.5	4.0	3.2	2.4	7152	chr2L	9973707	intergenic	not near genes	chr2L	9977283	intergenic	not near genes	chr2L	9980859	intergenic	not near genes	chr2L_10_9975001	chr2L_9975001	RAL-377
370	chr2L	10156304	10156348	chr2L	10163790	10163838	blood	12	7481	4.0	3.0	3.5	2.7	7534	chr2L	10156304	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160071	intron	CG44153 -	chr2L	10163838	intron	CG44153 -	chr2L_12_10160001	chr2L_10160001	RAL-377
387	chr2L	10592823	10592867	chr2L	10600505	10600549	opus	24	7682	2.0	4.5	3.2	5.7	7726	chr2L	10592823	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600549	intron	Trim9 +	chr2L_24_10595001	chr2L_10595001	RAL-377
402	chr2L	10876560	10876572	chr2L	10883636	10883654	297	4	7078	3.0	4.0	3.5	0.9	7094	chr2L	10876560	intergenic	not near genes	chr2L	10880107	intergenic	not near genes	chr2L	10883654	intergenic	not near genes	chr2L_4_10880001	chr2L_10880001	RAL-377
430	chr2L	11540560	11540614	chr2L	11547985	11548036	Tabor	13	7423	6.5	1.5	4.0	2.6	7476	chr2L	11540560	intergenic	not near genes	chr2L	11544298	intergenic	not near genes	chr2L	11548036	intergenic	not near genes	chr2L_13_11540001	chr2L_11540001	RAL-377
431	chr2L	11563621	11563666	chr2L	11568845	11568890	copia	13	5223	5.0	5.5	5.2	2.1	5269	chr2L	11563621	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568890	intergenic	not near genes	chr2L_13_11565001	chr2L_11565001	RAL-377
437	chr2L	11713496	11713538	chr2L	11720982	11721016	blood	12	7486	2.0	7.5	4.8	2.1	7520	chr2L	11713496	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721016	intergenic	CR44143 +	chr2L_12_11715001	chr2L_11715001	RAL-377
452	chr2L	12067312	12067350	chr2L	12074384	12074422	297	10	7072	7.0	4.5	5.8	1.5	7110	chr2L	12067312	intergenic	not near genes	chr2L	12070867	intergenic	not near genes	chr2L	12074422	intergenic	not near genes	chr2L_10_12070001	chr2L_12070001	RAL-377
481	chr2L	12558314	12558351	chr2L	12565463	12565500	HMS-Beagle	8	7147	2.0	5.5	3.8	1.7	7186	chr2L	12558314	intergenic	not near genes	chr2L	12561907	intergenic	not near genes	chr2L	12565500	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	RAL-377
486	chr2L	12728912	12728950	chr2L	12729166	12729212	pogo	12	260	4.5	2.5	3.5	2.7	300	chr2L	12728912	intron	MRP +	chr2L	12729062	intron	MRP +	chr2L	12729212	exon	MRP +	chr2L_12_12725001	chr2L_12725001	RAL-377
487	chr2L	12731046	12731088	chr2L	12735833	12735875	F-element	18	4786	7.0	6.0	6.5	2.4	4829	chr2L	12731046	intron	MRP +	chr2L	12733460	intron	MRP +	chr2L	12735875	intron	MRP +	chr2L_18_12730001	chr2L_12730001	RAL-377
488	chr2L	12739161	12739197	chr2L	12743962	12743998	Doc	13	4801	4.0	4.0	4.0	2.6	4837	chr2L	12739161	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743998	exon	MRP +	chr2L_13_12740001	chr2L_12740001	RAL-377
490	chr2L	12781792	12781815	chr2L	12789255	12789285	Quasimodo	5	7465	6.0	8.5	7.2	0.6	7493	chr2L	12781792	intergenic	not near genes	chr2L	12785538	intergenic	not near genes	chr2L	12789285	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-377
491	chr2L	12791599	12791619	chr2L	12795283	12795317	F-element	4	3694	0.5	3.0	1.8	1.4	3718	chr2L	12791599	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795317	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-377
492	chr2L	12791620	12791641	chr2L	12795280	12795339	F-element	5	3690	0.0	3.0	1.5	2.0	3719	chr2L	12791620	intergenic	not near genes	chr2L	12793480	intergenic	not near genes	chr2L	12795339	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	RAL-377
497	chr2L	12861672	12861731	chr2L	12863159	12863216	hobo	14	1486	3.0	3.5	3.2	3.3	1544	chr2L	12861672	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863216	intergenic	not near genes	chr2L_14_12860001	chr2L_12860001	RAL-377
499	chr2L	12933841	12933881	chr2L	12941328	12941365	blood	12	7486	4.0	8.0	6.0	1.7	7524	chr2L	12933841	intergenic	not near genes	chr2L	12937603	intergenic	not near genes	chr2L	12941365	intergenic	not near genes	chr2L_12_12935001	chr2L_12935001	RAL-377
501	chr2L	13036224	13036272	chr2L	13036486	13036534	X-element	12	262	3.5	6.0	4.8	2.1	310	chr2L	13036224	intron	CG9932 -	chr2L	13036379	intron	CG9932 -	chr2L	13036534	intron	CG9932 -	chr2L_12_13035001	chr2L_13035001	RAL-377
508	chr2L	13241942	13241948	chr2L	13244345	13244352	BS	4	2404	2.0	2.0	2.0	1.3	2410	chr2L	13241942	5` UTR	CR45330 +	chr2L	13243147	intron	CR45330 +	chr2L	13244352	5` UTR	CR45330 +	chr2L_4_13240001	chr2L_13240001	RAL-377
516	chr2L	13405629	13405678	chr2L	13410446	13410495	Doc	24	4816	3.5	10.0	6.8	3.1	4866	chr2L	13405629	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410495	intron	CG7110 +	chr2L_24_13405001	chr2L_13405001	RAL-377
518	chr2L	13449445	13449494	chr2L	13456901	13456950	Quasimodo	22	7456	3.0	7.0	5.0	3.7	7505	chr2L	13449445	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456950	intron	CG42784 +	chr2L_22_13450001	chr2L_13450001	RAL-377
520	chr2L	13481435	13481464	chr2L	13482062	13482091	jockey	8	626	6.0	4.0	5.0	1.3	656	chr2L	13481435	intron	CG42784 +	chr2L	13481763	intron	CG42784 +	chr2L	13482091	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-377
523	chr2L	13522263	13522283	chr2L	13527589	13527609	Transpac	5	5325	4.5	6.5	5.5	0.8	5346	chr2L	13522263	intron	B4 -	chr2L	13524936	intron	B4 -	chr2L	13527609	intron	B4 -	chr2L_5_13520001	chr2L_13520001	RAL-377
524	chr2L	13560385	13560418	chr2L	13565226	13565259	F-element	11	4841	8.5	3.5	6.0	1.6	4874	chr2L	13560385	intron	kuz +	chr2L	13562822	intron	kuz +	chr2L	13565259	intron	kuz +	chr2L_11_13560001	chr2L_13560001	RAL-377
530	chr2L	13761795	13761836	chr2L	13762926	13762947	Doc	14	1129	4.0	6.5	5.2	2.3	1152	chr2L	13761795	intron	TM9SF4 +	chr2L	13762371	intron	TM9SF4 +	chr2L	13762947	intron	TM9SF4 +	chr2L_14_13760001	chr2L_13760001	RAL-377
532	chr2L	13853079	13853112	chr2L	13862249	13862282	roo	14	9170	6.5	7.5	7.0	1.8	9203	chr2L	13853079	intron	CenG1A +	chr2L	13857680	intron	CenG1A +	chr2L	13862282	intron	CenG1A +	chr2L_14_13855001	chr2L_13855001	RAL-377
552	chr2L	14465598	14465615	chr2L	14469095	14469112	hopper2	8	3497	5.5	10.0	7.8	0.9	3514	chr2L	14465598	intergenic	not near genes	chr2L	14467355	intergenic	not near genes	chr2L	14469112	intergenic	not near genes	chr2L_8_14465001	chr2L_14465001	RAL-377
561	chr2L	14803858	14803911	chr2L	14809081	14809126	copia	13	5222	3.0	2.5	2.8	3.4	5268	chr2L	14803858	intergenic	not near genes	chr2L	14806492	intergenic	not near genes	chr2L	14809126	intergenic	not near genes	chr2L_13_14805001	chr2L_14805001	RAL-377
564	chr2L	14889935	14889978	chr2L	14890380	14890423	jockey	14	444	3.5	4.5	4.0	2.8	488	chr2L	14889935	intergenic	not near genes	chr2L	14890179	intergenic	not near genes	chr2L	14890423	intergenic	not near genes	chr2L_14_14890001	chr2L_14890001	RAL-377
567	chr2L	14984354	14984402	chr2L	14991976	14992008	opus	11	7617	6.0	6.0	6.0	1.6	7654	chr2L	14984354	intron	mol -	chr2L	14988181	intron	mol -	chr2L	14992008	intron	mol -	chr2L_11_14985001	chr2L_14985001	RAL-377
588	chr2L	15446030	15446074	chr2L	15453519	15453563	blood	13	7488	5.5	2.0	3.8	2.7	7533	chr2L	15446030	intergenic	not near genes	chr2L	15449796	intergenic	not near genes	chr2L	15453563	intergenic	not near genes	chr2L_13_15445001	chr2L_15445001	RAL-377
597	chr2L	15586397	15586437	chr2L	15593469	15593509	297	10	7071	5.0	4.5	4.8	1.7	7112	chr2L	15586397	intergenic	not near genes	chr2L	15589953	intergenic	not near genes	chr2L	15593509	intergenic	not near genes	chr2L_10_15585001	chr2L_15585001	RAL-377
601	chr2L	15826875	15826892	chr2L	15829289	15829306	Tabor	9	2414	3.0	10.5	6.8	1.2	2431	chr2L	15826875	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829306	intergenic	not near genes	chr2L_9_15825001	chr2L_15825001	RAL-377
609	chr2L	15956012	15956041	chr2L	15957499	15957528	hobo	14	1486	2.5	7.0	4.8	2.4	1516	chr2L	15956012	intron	beat-Ib -	chr2L	15956770	intron	beat-Ib -	chr2L	15957528	intron	beat-Ib -	chr2L_14_15955001	chr2L_15955001	RAL-377
615	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	16.0	19.0	17.5	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-377
617	chr2L	16141152	16141193	chr2L	16146379	16146420	copia	19	5227	2.5	6.0	4.2	3.7	5268	chr2L	16141152	intergenic	not near genes	chr2L	16143786	intergenic	not near genes	chr2L	16146420	intergenic	not near genes	chr2L_19_16140001	chr2L_16140001	RAL-377
618	chr2L	16153721	16153756	chr2L	16160789	16160830	297	4	7071	4.5	3.0	3.8	0.8	7109	chr2L	16153721	intergenic	not near genes	chr2L	16157276	intergenic	not near genes	chr2L	16160830	intergenic	not near genes	chr2L_4_16155001	chr2L_16155001	RAL-377
620	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	11	145889	16.0	19.0	17.5	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	RAL-377
622	chr2L	16280245	16280268	chr2L	16281426	16281459	1360	5	1188	4.5	2.5	3.5	1.1	1214	chr2L	16280245	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281459	intron	crp -	chr2L_5_16280001	chr2L_16280001	RAL-377
628	chr2L	16511968	16511996	chr2L	16519115	16519143	HMS-Beagle	7	7147	3.5	3.0	3.2	1.7	7175	chr2L	16511968	intron	CG5953 -	chr2L	16515556	intron	CG5953 -	chr2L	16519143	intron	CG5953 -	chr2L_7_16515001	chr2L_16515001	RAL-377
653	chr2L	16958087	16958135	chr2L	16962895	16962943	Doc	17	4807	1.0	4.0	2.5	4.9	4856	chr2L	16958087	intergenic	not near genes	chr2L	16960515	intergenic	not near genes	chr2L	16962943	intergenic	not near genes	chr2L_17_16960001	chr2L_16960001	RAL-377
664	chr2L	17167545	17167592	chr2L	17167806	17167853	pogo	13	261	2.0	5.5	3.8	2.7	308	chr2L	17167545	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167699	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167853	intron,intron	CG34106 +,beat-IIIa +	chr2L_13_17165001	chr2L_17165001	RAL-377
668	chr2L	17199142	17199190	chr2L	17200629	17200677	hobo	18	1487	3.5	2.5	3.0	4.5	1535	chr2L	17199142	intron	beat-IIIc -	chr2L	17199910	intron	beat-IIIc -	chr2L	17200677	intron	beat-IIIc -	chr2L_18_17195001	chr2L_17195001	RAL-377
671	chr2L	17273173	17273229	chr2L	17277976	17278018	F-element	11	4799	2.5	4.5	3.5	2.4	4845	chr2L	17273173	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17278018	intergenic	not near genes	chr2L_11_17275001	chr2L_17275001	RAL-377
678	chr2L	17432008	17432028	chr2L	17432135	17432155	1360	6	127	8.0	11.5	9.8	0.6	147	chr2L	17432008	intron	Dif -	chr2L	17432082	intron	Dif -	chr2L	17432155	intron	Dif -	chr2L_6_17430001	chr2L_17430001	RAL-377
689	chr2L	17819911	17819950	chr2L	17825134	17825163	copia	5	5221	5.0	2.5	3.8	1.0	5252	chr2L	17819911	intron	CadN2 -	chr2L	17822537	intron	CadN2 -	chr2L	17825163	intron	CadN2 -	chr2L_5_17820001	chr2L_17820001	RAL-377
692	chr2L	17911948	17911987	chr2L	17914145	17914185	pogo	4	2197	4.0	6.5	5.2	0.6	2237	chr2L	17911948	intergenic	not near genes	chr2L	17913066	intergenic	not near genes	chr2L	17914185	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-377
695	chr2L	17951923	17951977	chr2L	17953410	17953464	hobo	17	1485	4.0	2.5	3.2	4.0	1541	chr2L	17951923	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953464	intergenic	not near genes	chr2L_17_17950001	chr2L_17950001	RAL-377
696	chr2L	18051882	18051902	chr2L	18061029	18061069	roo	8	9162	6.0	2.0	4.0	1.6	9187	chr2L	18051882	intron	rdo +	chr2L	18056476	intron	rdo +	chr2L	18061069	intron	rdo +	chr2L_8_18055001	chr2L_18055001	RAL-377
711	chr2L	18408012	18408032	chr2L	18412816	18412836	Doc	8	4803	7.5	0.0	3.8	1.7	4824	chr2L	18408012	intergenic	not near genes	chr2L	18410424	intergenic	not near genes	chr2L	18412836	intergenic	not near genes	chr2L_8_18410001	chr2L_18410001	RAL-377
734	chr2L	19147367	19147401	chr2L	19154403	19154456	297	9	7049	4.0	5.0	4.5	1.6	7089	chr2L	19147367	intron	brat +	chr2L	19150912	intron	brat +	chr2L	19154456	intron	brat +	chr2L_9_19150001	chr2L_19150001	RAL-377
736	chr2L	19345016	19345045	chr2L	19357245	19357273	blood	10	12227	3.0	8.5	5.8	1.5	12257	chr2L	19345016	intron	dnt -	chr2L	19351144	intron	dnt -	chr2L	19357273	intron	dnt -	chr2L_10_19350001	chr2L_19350001	RAL-377
747	chr2L	19620084	19620125	chr2L	19621093	19621124	jockey	5	1001	5.0	5.0	5.0	0.8	1040	chr2L	19620084	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621124	intron	Lar +	chr2L_5_19620001	chr2L_19620001	RAL-377
749	chr2L	19652552	19652566	chr2L	19674008	19674012	opus	9	21454	10.5	3.0	6.8	1.2	21460	chr2L	19652552	intron	Lar +	chr2L	19663282	intron	Lar +	chr2L	19674012	intron	Lar +	chr2L_9_19660001	chr2L_19660001	RAL-377
750	chr2L	19652568	19652598	chr2L	19674004	19674052	opus	7	21452	6.0	2.5	4.2	1.3	21484	chr2L	19652568	intron	Lar +	chr2L	19663310	intron	Lar +	chr2L	19674052	intron	Lar +	chr2L_7_19660001	chr2L_19660001	RAL-377
752	chr2L	19703516	19703569	chr2L	19712672	19712708	roo	24	9152	7.0	5.0	6.0	3.4	9192	chr2L	19703516	intron	Lar +	chr2L	19708112	intron	Lar +	chr2L	19712708	intron	Lar +	chr2L_24_19705001	chr2L_19705001	RAL-377
754	chr2L	19762790	19762836	chr2L	19763052	19763098	pogo	17	261	5.5	7.5	6.5	2.3	308	chr2L	19762790	5` UTR	fbp -	chr2L	19762944	intron	fbp -	chr2L	19763098	intron	fbp -	chr2L_17_19760001	chr2L_19760001	RAL-377
767	chr2L	20005856	20005901	chr2L	20010952	20010997	flea	19	5095	7.0	5.0	6.0	2.7	5141	chr2L	20005856	intron	CG43861 -	chr2L	20008426	intron	CG43861 -	chr2L	20010997	intron	CG43861 -	chr2L_19_20005001	chr2L_20005001	RAL-377
778	chr2L	20272107	20272135	chr2L	20282837	20282866	copia	9	10729	5.5	5.0	5.2	1.5	10759	chr2L	20272107	intergenic	not near genes	chr2L	20277486	intergenic	not near genes	chr2L	20282866	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-377
782	chr2L	20303162	20303191	chr2L	20310636	20310679	blood	11	7487	1.5	10.0	5.8	1.6	7517	chr2L	20303162	intergenic	not near genes	chr2L	20306920	intergenic	not near genes	chr2L	20310679	intergenic	not near genes	chr2L_11_20305001	chr2L_20305001	RAL-377
787	chr2L	20372199	20372254	chr2L	20372469	20372515	pogo	15	269	0.5	7.5	4.0	3.0	316	chr2L	20372199	intergenic	Ugt37a1 -	chr2L	20372357	intergenic	Ugt37a1 -	chr2L	20372515	exon	Ugt37a1 -	chr2L_15_20370001	chr2L_20370001	RAL-377
790	chr2L	20468361	20468397	chr2L	20468486	20468522	INE-1	6	124	17.0	14.5	15.8	0.4	161	chr2L	20468361	intron	CR44980 -	chr2L	20468442	intron	CR44980 -	chr2L	20468522	intron	CR44980 -	chr2L_6_20465001	chr2L_20465001	RAL-377
797	chr2L	20568642	20568675	chr2L	20569052	20569086	X-element	8	410	7.0	2.0	4.5	1.5	444	chr2L	20568642	intron	CR45347 +	chr2L	20568864	intron	CR45347 +	chr2L	20569086	intron	CR45347 +	chr2L_8_20565001	chr2L_20565001	RAL-377
798	chr2L	20576197	20576251	chr2L	20583685	20583727	blood	12	7485	5.5	5.5	5.5	1.8	7530	chr2L	20576197	intergenic	CR45347 +	chr2L	20579962	intergenic	not near genes	chr2L	20583727	3` UTR	CR44909 -	chr2L_12_20575001	chr2L_20575001	RAL-377
807	chr2L	20835789	20835834	chr2L	20836526	20836570	Quasimodo	18	737	6.0	2.0	4.0	3.6	781	chr2L	20835789	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836570	intergenic	Spn38F -	chr2L_18_20835001	chr2L_20835001	RAL-377
810	chr2L	20891515	20891545	chr2L	20896636	20896666	jockey	11	5121	2.0	5.5	3.8	2.3	5151	chr2L	20891515	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896666	intron,intron	CG43739 -,sky -	chr2L_11_20890001	chr2L_20890001	RAL-377
814	chr2L	20976633	20976661	chr2L	20981468	20981496	X-element	10	4834	5.0	4.0	4.5	1.8	4863	chr2L	20976633	intron	CG42238 -	chr2L	20979064	intron	CG42238 -	chr2L	20981496	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	RAL-377
816	chr2L	21020256	21020306	chr2L	21023953	21024003	NOF	17	3694	6.0	4.0	5.0	2.8	3747	chr2L	21020256	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21024003	intron	CG42238 -	chr2L_17_21020001	chr2L_21020001	RAL-377
817	chr2L	21041124	21041162	chr2L	21049405	21049443	Tirant	10	8276	7.5	5.0	6.2	1.4	8319	chr2L	21041124	intron	CG42238 -	chr2L	21045284	intron	CG42238 -	chr2L	21049443	intron	CG42238 -	chr2L_10_21045001	chr2L_21045001	RAL-377
830	chr2L	21347531	21347579	chr2L	21355023	21355070	blood	15	7491	6.0	4.0	5.0	2.5	7539	chr2L	21347531	intron	Tsp39D +	chr2L	21351300	intron	Tsp39D +	chr2L	21355070	intron	Tsp39D +	chr2L_15_21350001	chr2L_21350001	RAL-377
834	chr2L	21597026	21597051	chr2L	21604790	21604815	roo	9	7764	4.5	7.5	6.0	1.3	7789	chr2L	21597026	intergenic	not near genes	chr2L	21600920	intergenic	not near genes	chr2L	21604815	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	RAL-377
835	chr2L	21691810	21691856	chr2L	21698300	21698345	Burdock	15	6490	10.5	0.0	5.2	2.4	6535	chr2L	21691810	intron	CG31619 +	chr2L	21695078	intron	CG31619 +	chr2L	21698345	intron	CG31619 +	chr2L_15_21695001	chr2L_21695001	RAL-377
841	chr2L	21981665	21981711	chr2L	21990850	21990885	roo	15	9184	3.5	4.0	3.8	3.1	9220	chr2L	21981665	exon	CG2528 -	chr2L	21986275	intron	CG2528 -	chr2L	21990885	exon	CG2528 -	chr2L_15_21985001	chr2L_21985001	RAL-377
848	chr2L	22258600	22258644	chr2L	22260744	22260788	G6	14	2145	4.5	2.5	3.5	3.1	2188	chr2L	22258600	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260788	intergenic	not near genes	chr2L_14_22255001	chr2L_22255001	RAL-377
852	chr2L	22581955	22581992	chr2L	22583760	22583801	S-element	23	1808	6.5	4.0	5.2	3.7	1846	chr2L	22581955	intron	CG17494 +	chr2L	22582878	intron	CG17494 +	chr2L	22583801	intron	CG17494 +	chr2L_23_22580001	chr2L_22580001	RAL-377
853	chr2L	22776402	22776450	chr2L	22778211	22778259	S-element	21	1809	4.5	7.5	6.0	3.0	1857	chr2L	22776402	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778259	intergenic	not near genes	chr2L_21_22775001	chr2L_22775001	RAL-377
855	chr2R	469952	469971	chr2R	473212	473227	F-element	4	3260	4.0	4.0	4.0	0.8	3275	chr2R	469952	intergenic	not near genes	chr2R	471590	intergenic	not near genes	chr2R	473227	intergenic	not near genes	chr2R_4_470001	chr2R_470001	RAL-377
856	chr2R	529325	529340	chr2R	537955	537985	Max-element	8	8642	4.0	5.0	4.5	1.5	8660	chr2R	529325	intron	CG40378 +	chr2R	533655	intron	CG40378 +	chr2R	537985	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-377
861	chr2R	1516585	1516602	chr2R	1521333	1521350	1731	19	4748	32.5	11.5	22.0	0.8	4765	chr2R	1516585	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521350	5` UTR	Maf1 -	chr2R_19_1515001	chr2R_1515001	RAL-377
865	chr2R	2110486	2110499	chr2R	2118064	2118077	17.6	5	7578	3.5	4.0	3.8	1.0	7591	chr2R	2110486	intron	CG17684 -	chr2R	2114282	intron	CG17684 -	chr2R	2118077	intron	CG17684 -	chr2R_5_2110001	chr2R_2110001	RAL-377
866	chr2R	2498964	2499014	chr2R	2508131	2508181	roo	17	9165	6.0	4.0	5.0	2.8	9217	chr2R	2498964	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508181	intron	MFS17 -	chr2R_17_2500001	chr2R_2500001	RAL-377
868	chr2R	2875364	2875393	chr2R	2878897	2878929	HMS-Beagle	4	3535	12.0	15.0	13.5	0.3	3565	chr2R	2875364	intergenic	not near genes	chr2R	2877146	intergenic	not near genes	chr2R	2878929	intergenic	not near genes	chr2R_4_2875001	chr2R_2875001	RAL-377
869	chr2R	3144096	3144109	chr2R	3393394	3393407	Doc	6	249297	22.0	25.0	23.5	0.2	249311	chr2R	3144096	intron	CG42596 +	chr2R	3268752	intergenic	not near genes	chr2R	3393407	intergenic	not near genes	chr2R_6_3265001	chr2R_3265001	RAL-377
872	chr2R	3526630	3526633	chr2R	3531380	3531382	F-element	4	4750	5.0	5.5	5.2	0.6	4752	chr2R	3526630	intergenic	not near genes	chr2R	3529006	intergenic	not near genes	chr2R	3531382	intergenic	not near genes	chr2R_4_3525001	chr2R_3525001	RAL-377
873	chr2R	3532598	3532634	chr2R	3536061	3536097	Doc	7	3463	3.5	4.0	3.8	1.5	3499	chr2R	3532598	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536097	intergenic	not near genes	chr2R_7_3530001	chr2R_3530001	RAL-377
874	chr2R	3927682	3927687	chr2R	4854358	4854364	gypsy10	4	926677	20.5	13.0	16.8	0.2	926682	chr2R	3927682	intron	uex -	chr2R	4391023	intron	Gprk1 -	chr2R	4854364	intergenic	not near genes	chr2R_4_4390001	chr2R_4390001	RAL-377
880	chr2R	4622958	4622986	chr2R	4624125	4624164	1360	7	1176	4.0	9.0	6.5	0.9	1206	chr2R	4622958	intergenic	CR44101 -	chr2R	4623561	intergenic	not near genes	chr2R	4624164	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	RAL-377
881	chr2R	4624625	4624671	chr2R	4626550	4626596	Bica	16	1924	6.5	6.0	6.2	2.2	1971	chr2R	4624625	intergenic	not near genes	chr2R	4625610	intergenic	not near genes	chr2R	4626596	intergenic	not near genes	chr2R_16_4625001	chr2R_4625001	RAL-377
887	chr2R	4750331	4750373	chr2R	4751498	4751550	1360	8	1174	7.0	9.5	8.2	0.9	1219	chr2R	4750331	intron	conu +	chr2R	4750940	intron	conu +	chr2R	4751550	intron	conu +	chr2R_8_4750001	chr2R_4750001	RAL-377
889	chr2R	4838851	4838902	chr2R	4840394	4840445	transib2	14	1543	6.0	3.5	4.8	2.4	1594	chr2R	4838851	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840445	intergenic	not near genes	chr2R_14_4835001	chr2R_4835001	RAL-377
890	chr2R	4870725	4870727	chr2R	4871256	4871258	R1A1-element	4	531	7.5	4.0	5.8	0.6	533	chr2R	4870725	intergenic	not near genes	chr2R	4870992	intergenic	not near genes	chr2R	4871258	intergenic	not near genes	chr2R_4_4870001	chr2R_4870001	RAL-377
891	chr2R	4870731	4870742	chr2R	4871255	4871273	R1A1-element	6	530	4.5	4.0	4.2	1.2	542	chr2R	4870731	intergenic	not near genes	chr2R	4871002	intergenic	not near genes	chr2R	4871273	intergenic	not near genes	chr2R_6_4870001	chr2R_4870001	RAL-377
906	chr2R	5417975	5418015	chr2R	5420627	5420667	Burdock	21	2652	7.0	8.0	7.5	2.5	2692	chr2R	5417975	intron	laccase2 +	chr2R	5419321	intron	laccase2 +	chr2R	5420667	intron	laccase2 +	chr2R_21_5415001	chr2R_5415001	RAL-377
909	chr2R	5543199	5543223	chr2R	5547303	5547327	invader1	7	4104	0.0	7.0	3.5	1.6	4128	chr2R	5543199	intron	CG30438 +	chr2R	5545263	intron	CG30438 +	chr2R	5547327	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	RAL-377
914	chr2R	5647805	5647817	chr2R	5648121	5648133	INE-1	5	316	15.5	14.5	15.0	0.3	328	chr2R	5647805	exon	CG11665 -	chr2R	5647969	intron	CG11665 -	chr2R	5648133	intron	CG11665 -	chr2R_5_5645001	chr2R_5645001	RAL-377
924	chr2R	5869255	5869302	chr2R	5874351	5874398	flea	20	5095	5.0	5.0	5.0	3.3	5143	chr2R	5869255	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874398	intergenic	not near genes	chr2R_20_5870001	chr2R_5870001	RAL-377
928	chr2R	5902140	5902192	chr2R	5909719	5909771	17.6	7	7579	5.0	5.0	5.0	1.2	7631	chr2R	5902140	intron	CG43366 +	chr2R	5905956	intron	CG43366 +	chr2R	5909771	intron	CG43366 +	chr2R_7_5905001	chr2R_5905001	RAL-377
936	chr2R	6096720	6096747	chr2R	6101923	6101952	BS	4	5210	4.5	4.0	4.2	0.8	5232	chr2R	6096720	intron	EcR -	chr2R	6099336	intron	EcR -	chr2R	6101952	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-377
944	chr2R	6494511	6494553	chr2R	6499293	6499335	F-element	14	4778	4.0	3.0	3.5	3.1	4824	chr2R	6494511	intergenic	not near genes	chr2R	6496923	intergenic	not near genes	chr2R	6499335	intergenic	not near genes	chr2R_14_6495001	chr2R_6495001	RAL-377
946	chr2R	6579758	6579806	chr2R	6584864	6584912	flea	22	5106	2.5	6.5	4.5	4.0	5154	chr2R	6579758	intron	jing +	chr2R	6582335	intron	jing +	chr2R	6584912	intron	jing +	chr2R_22_6580001	chr2R_6580001	RAL-377
954	chr2R	6952159	6952184	chr2R	6959759	6959784	opus	8	7600	4.0	7.0	5.5	1.2	7625	chr2R	6952159	intron,intron	mim -,CheB42c -	chr2R	6955972	intron,intron	mim -,CheB42c -	chr2R	6959784	intron,intron	mim -,CheB42c -	chr2R_8_6955001	chr2R_6955001	RAL-377
962	chr2R	7196554	7196597	chr2R	7201344	7201392	F-element	15	4794	5.0	3.5	4.2	2.9	4838	chr2R	7196554	intron	pk +	chr2R	7198973	intron	pk +	chr2R	7201392	intron	pk +	chr2R_15_7195001	chr2R_7195001	RAL-377
963	chr2R	7235798	7235846	chr2R	7240910	7240958	jockey	12	5110	4.0	1.0	2.5	3.4	5160	chr2R	7235798	intergenic	not near genes	chr2R	7238378	intergenic	not near genes	chr2R	7240958	intergenic	not near genes	chr2R_12_7235001	chr2R_7235001	RAL-377
964	chr2R	7262181	7262217	chr2R	7269261	7269265	297	7	7075	2.0	8.5	5.2	1.1	7084	chr2R	7262181	intergenic	not near genes	chr2R	7265723	intergenic	not near genes	chr2R	7269265	intergenic	not near genes	chr2R_7_7265001	chr2R_7265001	RAL-377
968	chr2R	7434879	7434909	chr2R	7439200	7439230	Juan	14	4321	7.0	9.0	8.0	1.6	4351	chr2R	7434879	intergenic	so +	chr2R	7437054	intergenic	not near genes	chr2R	7439230	intergenic	not near genes	chr2R_14_7435001	chr2R_7435001	RAL-377
972	chr2R	7608388	7608408	chr2R	7613605	7613615	I-element	5	5219	6.5	0.0	3.2	1.2	5227	chr2R	7608388	intron	CG1358 -	chr2R	7611002	intron	CG1358 -	chr2R	7613615	intron	CG1358 -	chr2R_5_7610001	chr2R_7610001	RAL-377
976	chr2R	7815663	7815675	chr2R	7822152	7822162	Burdock	4	6488	8.5	5.5	7.0	0.5	6499	chr2R	7815663	intergenic	CG1882 +	chr2R	7818912	intergenic	not near genes	chr2R	7822162	3` UTR	cathD -	chr2R_4_7815001	chr2R_7815001	RAL-377
977	chr2R	7815676	7815700	chr2R	7822142	7822189	Burdock	9	6486	5.0	4.5	4.8	1.6	6513	chr2R	7815676	intergenic	CG1882 +	chr2R	7818932	intergenic	not near genes	chr2R	7822189	3` UTR	cathD -	chr2R_9_7815001	chr2R_7815001	RAL-377
978	chr2R	7869164	7869208	chr2R	7873970	7874014	Doc	10	4802	4.0	2.0	3.0	2.5	4850	chr2R	7869164	intron	Dgk -	chr2R	7871589	intron	Dgk -	chr2R	7874014	intron	Dgk -	chr2R_10_7870001	chr2R_7870001	RAL-377
999	chr2R	8160918	8160948	chr2R	8161028	8161032	1360	6	106	10.0	12.5	11.2	0.5	114	chr2R	8160918	exon	CG8708 -	chr2R	8160975	intron	CG8708 -	chr2R	8161032	intron	CG8708 -	chr2R_6_8160001	chr2R_8160001	RAL-377
1005	chr2R	8330845	8330890	chr2R	8331349	8331395	roo	17	505	3.0	6.0	4.5	3.1	550	chr2R	8330845	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331395	intron	pdm3 +	chr2R_17_8330001	chr2R_8330001	RAL-377
1006	chr2R	8398201	8398241	chr2R	8403002	8403036	Doc	7	4800	4.5	4.5	4.5	1.3	4835	chr2R	8398201	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403036	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-377
1011	chr2R	8566043	8566066	chr2R	8567006	8567032	1360	11	965	10.5	12.5	11.5	0.9	989	chr2R	8566043	5` UTR	Cyp6a14 -	chr2R	8566538	5` UTR	Cyp6a14 -	chr2R	8567032	5` UTR	Cyp6a14 -	chr2R_11_8565001	chr2R_8565001	RAL-377
1020	chr2R	8722750	8722785	chr2R	8723011	8723043	pogo	10	258	7.0	2.5	4.8	1.7	293	chr2R	8722750	intron	CG14767 -	chr2R	8722896	intron	CG14767 -	chr2R	8723043	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	RAL-377
1022	chr2R	8777902	8777942	chr2R	8784113	8784166	diver	9	6212	6.5	5.0	5.8	1.3	6264	chr2R	8777902	intergenic	not near genes	chr2R	8781034	intergenic	not near genes	chr2R	8784166	intergenic	not near genes	chr2R_9_8780001	chr2R_8780001	RAL-377
1028	chr2R	9151288	9151333	chr2R	9157777	9157823	Burdock	5	6490	10.0	10.0	10.0	0.5	6535	chr2R	9151288	exon	CG30345 +	chr2R	9154556	intergenic	not near genes	chr2R	9157823	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	RAL-377
1029	chr2R	9212674	9212710	chr2R	9213180	9213209	roo	11	502	8.0	3.5	5.8	1.6	535	chr2R	9212674	intergenic	CR45309 +	chr2R	9212942	intergenic	CR45309 +	chr2R	9213209	5` UTR	CR45309 +	chr2R_11_9210001	chr2R_9210001	RAL-377
1036	chr2R	9480058	9480105	chr2R	9490609	9490655	roo	15	10551	7.0	5.5	6.2	2.1	10597	chr2R	9480058	intergenic	not near genes	chr2R	9485356	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_15_9485001	chr2R_9485001	RAL-377
1041	chr2R	9726595	9726642	chr2R	9734166	9734213	17.6	14	7571	6.0	5.0	5.5	2.2	7618	chr2R	9726595	intron	sqa -	chr2R	9730404	intron	sqa -	chr2R	9734213	intron	sqa -	chr2R_14_9730001	chr2R_9730001	RAL-377
1045	chr2R	9871021	9871063	chr2R	9871527	9871568	roo	16	503	4.5	6.5	5.5	2.5	547	chr2R	9871021	intron	cbx -	chr2R	9871294	intron	cbx -	chr2R	9871568	intron,5` UTR	cbx -,CG18446 +	chr2R_16_9870001	chr2R_9870001	RAL-377
1048	chr2R	9945422	9945462	chr2R	9945638	9945678	BS	5	216	13.0	6.5	9.8	0.5	256	chr2R	9945422	intron	Mef2 -	chr2R	9945550	intron	Mef2 -	chr2R	9945678	intron	Mef2 -	chr2R_5_9945001	chr2R_9945001	RAL-377
1052	chr2R	10005838	10005875	chr2R	10007011	10007033	1360	10	1180	5.0	2.0	3.5	2.2	1195	chr2R	10005838	intron	Pka-R2 -	chr2R	10006436	intron	Pka-R2 -	chr2R	10007033	intron	Pka-R2 -	chr2R_10_10005001	chr2R_10005001	RAL-377
1057	chr2R	10176857	10176913	chr2R	10186044	10186100	roo	19	9187	5.0	4.0	4.5	3.5	9243	chr2R	10176857	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186100	intron	KCNQ -	chr2R_19_10180001	chr2R_10180001	RAL-377
1076	chr2R	10585578	10585587	chr2R	10594161	10594165	Tirant	4	8586	6.0	3.5	4.8	0.7	8587	chr2R	10585578	intron	psq +	chr2R	10589872	intron	psq +	chr2R	10594165	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-377
1077	chr2R	10622345	10622362	chr2R	10637118	10637146	mdg1	7	14783	8.5	3.5	6.0	1.0	14801	chr2R	10622345	intron	CG11883 +	chr2R	10629746	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_7_10625001	chr2R_10625001	RAL-377
1092	chr2R	10979652	10979684	chr2R	10980142	10980166	297	4	482	2.5	3.5	3.0	1.0	514	chr2R	10979652	intergenic	not near genes	chr2R	10979909	intergenic	not near genes	chr2R	10980166	intergenic	not near genes	chr2R_4_10975001	chr2R_10975001	RAL-377
1093	chr2R	11009797	11009847	chr2R	11018991	11019041	roo	11	9189	4.5	4.5	4.5	2.0	9244	chr2R	11009797	intron	luna -	chr2R	11014419	intron	luna -	chr2R	11019041	intron	luna -	chr2R_11_11010001	chr2R_11010001	RAL-377
1094	chr2R	11019865	11019908	chr2R	11024947	11024994	jockey	6	5079	1.5	0.5	1.0	3.0	5129	chr2R	11019865	intron	luna -	chr2R	11022430	intron	luna -	chr2R	11024994	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-377
1099	chr2R	11207812	11207847	chr2R	11208024	11208048	BS	16	209	3.0	9.0	6.0	2.3	236	chr2R	11207812	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208048	intron	shn +	chr2R_16_11205001	chr2R_11205001	RAL-377
1103	chr2R	11297608	11297650	chr2R	11301949	11301991	flea	6	4341	6.5	9.5	8.0	0.7	4383	chr2R	11297608	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11301991	5` UTR	CG7741 +	chr2R_6_11295001	chr2R_11295001	RAL-377
1105	chr2R	11415500	11415551	chr2R	11418668	11418705	opus	20	3161	1.5	6.5	4.0	4.0	3205	chr2R	11415500	intron	Drip -	chr2R	11417102	intron	Drip -	chr2R	11418705	intron	Drip -	chr2R_20_11415001	chr2R_11415001	RAL-377
1106	chr2R	11472627	11472675	chr2R	11473844	11473888	pogo	19	1216	8.5	7.0	7.8	2.2	1261	chr2R	11472627	intergenic	not near genes	chr2R	11473258	intergenic	not near genes	chr2R	11473888	intergenic	not near genes	chr2R_19_11470001	chr2R_11470001	RAL-377
1137	chr2R	12501681	12501722	chr2R	12503863	12503903	Rt1c	9	2179	1.0	5.5	3.2	2.1	2222	chr2R	12501681	intron	fdl -	chr2R	12502792	intron	fdl -	chr2R	12503903	intron	fdl -	chr2R_9_12500001	chr2R_12500001	RAL-377
1144	chr2R	12707506	12707546	chr2R	12715892	12715932	roo	17	8385	3.0	3.5	3.2	4.0	8426	chr2R	12707506	intron	CG42663 +	chr2R	12711719	intron	CG42663 +	chr2R	12715932	intron	CG42663 +	chr2R_17_12710001	chr2R_12710001	RAL-377
1149	chr2R	12789280	12789320	chr2R	12797663	12797703	roo	4	8378	3.5	4.0	3.8	0.8	8423	chr2R	12789280	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797703	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-377
1156	chr2R	13136823	13136865	chr2R	13141641	13141683	Doc	14	4817	7.5	2.0	4.8	2.4	4860	chr2R	13136823	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141683	intron	Cap-G +	chr2R_14_13135001	chr2R_13135001	RAL-377
1174	chr2R	13580484	13580524	chr2R	13580854	13580894	jockey	11	368	2.5	4.0	3.2	2.6	410	chr2R	13580484	3` UTR	CG6191 -	chr2R	13580689	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580894	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_11_13580001	chr2R_13580001	RAL-377
1182	chr2R	13728116	13728143	chr2R	13735797	13735824	opus	6	7681	7.5	3.0	5.2	1.0	7708	chr2R	13728116	intron	fas +	chr2R	13731970	intron	fas +	chr2R	13735824	intron	fas +	chr2R_6_13730001	chr2R_13730001	RAL-377
1189	chr2R	13905574	13905628	chr2R	13907576	13907629	Rt1a	10	2000	3.0	1.5	2.2	3.1	2055	chr2R	13905574	intron	shot -	chr2R	13906602	intron	shot -	chr2R	13907629	intron	shot -	chr2R_10_13905001	chr2R_13905001	RAL-377
1207	chr2R	14394214	14394223	chr2R	14399023	14399032	Doc	5	4809	14.0	3.0	8.5	0.5	4818	chr2R	14394214	intergenic	not near genes	chr2R	14396623	intergenic	not near genes	chr2R	14399032	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-377
1208	chr2R	14467287	14467298	chr2R	14476465	14476470	roo	4	9176	4.5	4.0	4.2	0.8	9183	chr2R	14467287	intergenic	not near genes	chr2R	14471878	intergenic	not near genes	chr2R	14476470	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-377
1209	chr2R	14467316	14467326	chr2R	14476447	14476504	roo	7	9171	0.0	2.5	1.2	3.2	9188	chr2R	14467316	intergenic	not near genes	chr2R	14471910	intergenic	not near genes	chr2R	14476504	5` UTR	CR44462 +	chr2R_7_14470001	chr2R_14470001	RAL-377
1210	chr2R	14497376	14497415	chr2R	14498559	14498612	1360	8	1191	1.0	4.0	2.5	2.3	1236	chr2R	14497376	3` UTR	Cpsf160 -	chr2R	14497994	intron	Cpsf160 -	chr2R	14498612	3` UTR	Cpsf160 -	chr2R_8_14495001	chr2R_14495001	RAL-377
1229	chr2R	14889199	14889210	chr2R	14897827	14897838	Max-element	5	8628	15.0	0.5	7.8	0.6	8639	chr2R	14889199	intergenic	Cyp6a8 -	chr2R	14893518	intergenic	not near genes	chr2R	14897838	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-377
1237	chr2R	15004738	15004750	chr2R	15005092	15005104	jockey	5	354	7.0	0.0	3.5	1.1	366	chr2R	15004738	intergenic	not near genes	chr2R	15004921	intergenic	not near genes	chr2R	15005104	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-377
1238	chr2R	15015445	15015485	chr2R	15022883	15022925	mdg1	12	7441	2.0	2.0	2.0	4.0	7480	chr2R	15015445	intron	hbs +	chr2R	15019185	intron	hbs +	chr2R	15022925	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-377
1241	chr2R	15084957	15084999	chr2R	15092026	15092068	297	11	7069	2.5	4.5	3.5	2.4	7111	chr2R	15084957	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092068	5` UTR	CR44457 +	chr2R_11_15085001	chr2R_15085001	RAL-377
1242	chr2R	15119305	15119340	chr2R	15127800	15127841	Tirant	5	8496	5.5	2.5	4.0	1.0	8536	chr2R	15119305	intron	chn +	chr2R	15123573	intron	chn +	chr2R	15127841	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-377
1272	chr2R	16539622	16539634	chr2R	16544844	16544860	copia	6	5224	3.5	0.0	1.8	2.1	5238	chr2R	16539622	intergenic	not near genes	chr2R	16542241	intergenic	not near genes	chr2R	16544860	intergenic	not near genes	chr2R_6_16540001	chr2R_16540001	RAL-377
1297	chr2R	17147224	17147263	chr2R	17152275	17152314	jockey	10	5051	5.5	7.5	6.5	1.3	5090	chr2R	17147224	intergenic	not near genes	chr2R	17149769	intergenic	not near genes	chr2R	17152314	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	RAL-377
1302	chr2R	17236500	17236540	chr2R	17241724	17241764	copia	11	5224	4.5	5.5	5.0	1.8	5264	chr2R	17236500	intron	mbl +	chr2R	17239132	intron	mbl +	chr2R	17241764	intron	mbl +	chr2R_11_17235001	chr2R_17235001	RAL-377
1313	chr2R	17485894	17485950	chr2R	17490676	17490730	F-element	9	4780	7.0	2.0	4.5	1.6	4836	chr2R	17485894	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488312	intron	NT5E-2 +	chr2R	17490730	intron	NT5E-2 +	chr2R_9_17485001	chr2R_17485001	RAL-377
1322	chr2R	17782350	17782390	chr2R	17783573	17783613	pogo	11	1222	6.5	7.0	6.8	1.4	1263	chr2R	17782350	intergenic	CG33981 -,fab1 -	chr2R	17782982	intergenic	not near genes	chr2R	17783613	intergenic	mir-31a -	chr2R_11_17780001	chr2R_17780001	RAL-377
1323	chr2R	17784022	17784050	chr2R	17784281	17784299	pogo	7	258	3.0	5.0	4.0	1.4	277	chr2R	17784022	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784299	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	RAL-377
1332	chr2R	18045651	18045702	chr2R	18046023	18046074	jockey	19	372	3.5	4.5	4.0	3.8	423	chr2R	18045651	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046074	intergenic	CG5767 -	chr2R_19_18045001	chr2R_18045001	RAL-377
1334	chr2R	18111684	18111711	chr2R	18115572	18115594	F-element	10	3888	2.5	0.0	1.2	4.5	3910	chr2R	18111684	intergenic	not near genes	chr2R	18113639	intergenic	not near genes	chr2R	18115594	intergenic	not near genes	chr2R_10_18110001	chr2R_18110001	RAL-377
1341	chr2R	18358382	18358422	chr2R	18372613	18372655	roo	11	14232	10.5	6.0	8.2	1.2	14273	chr2R	18358382	intergenic	not near genes	chr2R	18365518	intergenic	not near genes	chr2R	18372655	intergenic	not near genes	chr2R_11_18365001	chr2R_18365001	RAL-377
1356	chr2R	18575802	18575811	chr2R	18581987	18581997	3S18	5	6190	2.0	3.5	2.8	1.3	6195	chr2R	18575802	intron	GEFmeso -	chr2R	18578900	intron	GEFmeso -	chr2R	18581997	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-377
1357	chr2R	18575812	18575830	chr2R	18581985	18582038	3S18	6	6200	0.0	3.5	1.8	2.1	6226	chr2R	18575812	intron	GEFmeso -	chr2R	18578925	intron	GEFmeso -	chr2R	18582038	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	RAL-377
1358	chr2R	18590852	18590896	chr2R	18600024	18600068	roo	8	9170	1.5	2.5	2.0	2.7	9216	chr2R	18590852	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600068	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-377
1396	chr2R	19776599	19776621	chr2R	19779942	19779964	jockey	6	3343	2.5	8.5	5.5	0.9	3365	chr2R	19776599	intergenic	not near genes	chr2R	19778282	intergenic	not near genes	chr2R	19779964	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-377
1399	chr2R	19914828	19914874	chr2R	19922260	19922306	mdg1	13	7432	6.0	3.0	4.5	2.4	7478	chr2R	19914828	intergenic	not near genes	chr2R	19918567	intergenic	not near genes	chr2R	19922306	intergenic	not near genes	chr2R_13_19915001	chr2R_19915001	RAL-377
1400	chr2R	19957441	19957464	chr2R	19962630	19962684	copia	4	5202	2.0	3.5	2.8	1.1	5243	chr2R	19957441	intergenic	CG44623 +	chr2R	19960062	intergenic	not near genes	chr2R	19962684	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-377
1405	chr2R	20069222	20069249	chr2R	20071872	20071899	opus	5	2650	2.0	6.5	4.2	1.0	2677	chr2R	20069222	intergenic	not near genes	chr2R	20070560	intergenic	not near genes	chr2R	20071899	intergenic	not near genes	chr2R_5_20070001	chr2R_20070001	RAL-377
1406	chr2R	20087996	20088026	chr2R	20088124	20088154	1360	10	125	3.5	9.5	6.5	1.3	158	chr2R	20087996	intergenic	not near genes	chr2R	20088075	intergenic	not near genes	chr2R	20088154	intergenic	not near genes	chr2R_10_20085001	chr2R_20085001	RAL-377
1429	chr2R	20739424	20739469	chr2R	20744212	20744257	F-element	6	4787	4.0	2.0	3.0	1.5	4833	chr2R	20739424	intron	dpr +	chr2R	20741840	intron	dpr +	chr2R	20744257	intron	dpr +	chr2R_6_20740001	chr2R_20740001	RAL-377
1431	chr2R	20783300	20783331	chr2R	20788092	20788123	F-element	6	4792	1.5	6.0	3.8	1.2	4823	chr2R	20783300	intergenic	not near genes	chr2R	20785712	intergenic	not near genes	chr2R	20788123	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-377
1444	chr2R	21151128	21151146	chr2R	21153808	21153826	opus	11	2679	0.0	6.5	3.2	2.6	2698	chr2R	21151128	intron	CG30389 -	chr2R	21152477	intron	CG30389 -	chr2R	21153826	intron	CG30389 -	chr2R_11_21150001	chr2R_21150001	RAL-377
1462	chr2R	21738283	21738299	chr2R	21747438	21747458	roo	4	9159	1.5	3.5	2.5	1.1	9175	chr2R	21738283	intergenic	not near genes	chr2R	21742870	intergenic	not near genes	chr2R	21747458	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-377
1463	chr2R	21753063	21753116	chr2R	21753568	21753621	roo	23	505	1.5	5.0	3.2	5.5	558	chr2R	21753063	intergenic	not near genes	chr2R	21753342	intergenic	not near genes	chr2R	21753621	intergenic	not near genes	chr2R_23_21750001	chr2R_21750001	RAL-377
1464	chr2R	21809509	21809543	chr2R	21817763	21817803	roo	7	8257	4.0	3.5	3.8	1.5	8294	chr2R	21809509	intergenic	not near genes	chr2R	21813656	intergenic	not near genes	chr2R	21817803	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-377
1488	chr2R	22349680	22349717	chr2R	22351482	22351515	jockey	13	1801	3.0	5.5	4.2	2.5	1835	chr2R	22349680	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351515	intron	Liprin-gamma -	chr2R_13_22350001	chr2R_22350001	RAL-377
1489	chr2R	22360375	22360377	chr2R	22360828	22360830	jockey	4	453	9.0	4.5	6.8	0.5	455	chr2R	22360375	intron	Liprin-gamma -	chr2R	22360602	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-377
1494	chr2R	22465298	22465322	chr2R	22465511	22465535	BS	4	213	12.0	5.5	8.8	0.4	237	chr2R	22465298	intron	CG10384 +	chr2R	22465416	intron	CG10384 +	chr2R	22465535	intron	CG10384 +	chr2R_4_22465001	chr2R_22465001	RAL-377
1498	chr2R	22525735	22525782	chr2R	22529309	22529342	jockey	10	3575	1.0	1.5	1.2	4.5	3607	chr2R	22525735	intron	px -	chr2R	22527538	intron	px -	chr2R	22529342	intron	px -	chr2R_10_22525001	chr2R_22525001	RAL-377
1501	chr2R	22729447	22729467	chr2R	22729668	22729695	INE-1	7	225	5.5	10.0	7.8	0.8	248	chr2R	22729447	intron	jbug -	chr2R	22729571	intron	jbug -	chr2R	22729695	intron	jbug -	chr2R_7_22725001	chr2R_22725001	RAL-377
1502	chr2R	22774951	22774995	chr2R	22775390	22775434	jockey	12	439	5.5	7.0	6.2	1.7	483	chr2R	22774951	intron	CG42260 -	chr2R	22775192	intron	CG42260 -	chr2R	22775434	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-377
1505	chr2R	22843039	22843051	chr2R	22845021	22845033	flea	5	1982	8.0	6.0	7.0	0.6	1994	chr2R	22843039	intergenic	CG9826 +	chr2R	22844036	intergenic	not near genes	chr2R	22845033	intergenic	not near genes	chr2R_5_22840001	chr2R_22840001	RAL-377
1509	chr2R	22958790	22958809	chr2R	22963895	22963916	flea	4	5106	2.0	4.0	3.0	1.0	5126	chr2R	22958790	intergenic	not near genes	chr2R	22961353	intergenic	not near genes	chr2R	22963916	intergenic	not near genes	chr2R_4_22960001	chr2R_22960001	RAL-377
1522	chr2R	23402590	23402638	chr2R	23407686	23407734	flea	15	5096	8.0	6.0	7.0	1.9	5144	chr2R	23402590	intergenic	CG3520 -	chr2R	23405162	intergenic	not near genes	chr2R	23407734	intergenic	not near genes	chr2R_15_23405001	chr2R_23405001	RAL-377
1525	chr2R	23529568	23529591	chr2R	23537159	23537177	412	4	7592	4.5	4.5	4.5	0.7	7609	chr2R	23529568	intron	bw -	chr2R	23533372	intron	bw -	chr2R	23537177	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-377
1534	chr2R	23877716	23877760	chr2R	23878207	23878251	297	5	491	6.0	12.0	9.0	0.5	535	chr2R	23877716	intergenic	ken +,TM4SF +	chr2R	23877984	intergenic	TM4SF +	chr2R	23878251	5` UTR	TM4SF +	chr2R_5_23875001	chr2R_23875001	RAL-377
1536	chr2R	23914288	23914330	chr2R	23921932	23921974	412	12	7641	4.0	4.0	4.0	2.4	7686	chr2R	23914288	exon	kcc +	chr2R	23918131	intron	kcc +	chr2R	23921974	exon	kcc +	chr2R_12_23915001	chr2R_23915001	RAL-377
1545	chr2R	24147063	24147081	chr2R	24154644	24154679	412	5	7585	2.5	1.5	2.0	1.7	7616	chr2R	24147063	intron	Dat +	chr2R	24150871	intron	Dat +	chr2R	24154679	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-377
1546	chr2R	24177215	24177269	chr2R	24184720	24184773	412	18	7504	2.0	2.0	2.0	6.0	7558	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184773	3` UTR	Nop60B +	chr2R_18_24180001	chr2R_24180001	RAL-377
1548	chr2R	24353407	24353447	chr2R	24361789	24361829	roo	9	8381	2.5	1.0	1.8	3.2	8422	chr2R	24353407	intron,intron	bs +,CR44811 -	chr2R	24357618	intron,intron	bs +,CR44811 -	chr2R	24361829	intron,intron	bs +,CR44811 -	chr2R_9_24355001	chr2R_24355001	RAL-377
1556	chr2R	24647571	24647609	chr2R	24655148	24655185	412	12	7574	7.0	4.0	5.5	1.8	7614	chr2R	24647571	intergenic	not near genes	chr2R	24651378	intergenic	not near genes	chr2R	24655185	intergenic	not near genes	chr2R_12_24650001	chr2R_24650001	RAL-377
1557	chr2R	24727877	24727914	chr2R	24735405	24735442	mdg1	6	7528	1.0	6.5	3.8	1.2	7565	chr2R	24727877	intron	Mid1 -	chr2R	24731660	intron	Mid1 -	chr2R	24735442	intron	Mid1 -	chr2R_6_24730001	chr2R_24730001	RAL-377
1561	chr2R	18684383	18684405	chr2R	24946850	24946876	roo	6	6262471	10.0	18.0	14.0	0.4	6262493	chr2R	18684383	3` UTR	CG44433 -	chr2R	21815630	intergenic	not near genes	chr2R	24946876	exon	CG2790 -	chr2R_6_21815001	chr2R_21815001	RAL-377
1569	chr2R	25141637	25141671	chr2R	25159347	25159381	roo	15	17709	9.5	6.0	7.8	1.7	17744	chr2R	25141637	intergenic	not near genes	chr2R	25150509	intergenic	not near genes	chr2R	25159381	intergenic	not near genes	chr2R_15_25150001	chr2R_25150001	RAL-377
1572	chr3L	110191	110240	chr3L	119378	119427	roo	23	9185	3.0	3.0	3.0	5.8	9236	chr3L	110191	intergenic	not near genes	chr3L	114809	intergenic	not near genes	chr3L	119427	intergenic	not near genes	chr3L_23_110001	chr3L_110001	RAL-377
1574	chr3L	402689	402714	chr3L	409759	409783	297	7	7071	3.0	9.0	6.0	1.0	7094	chr3L	402689	intergenic	not near genes	chr3L	406236	intergenic	not near genes	chr3L	409783	intergenic	not near genes	chr3L_7_405001	chr3L_405001	RAL-377
1585	chr3L	789894	789946	chr3L	790399	790451	roo	17	504	5.0	6.0	5.5	2.6	557	chr3L	789894	intergenic	not near genes	chr3L	790172	intergenic	not near genes	chr3L	790451	intergenic	not near genes	chr3L_17_790001	chr3L_790001	RAL-377
1589	chr3L	857998	858021	chr3L	866478	866483	Tirant	4	8479	4.5	2.5	3.5	0.9	8485	chr3L	857998	intergenic	not near genes	chr3L	862240	intergenic	not near genes	chr3L	866483	intergenic	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-377
1591	chr3L	925158	925168	chr3L	932604	932614	mdg1	5	7446	12.5	4.5	8.5	0.5	7456	chr3L	925158	intron	Glut1 +	chr3L	928886	intron	Glut1 +	chr3L	932614	intron	Glut1 +	chr3L_5_925001	chr3L_925001	RAL-377
1592	chr3L	925172	925187	chr3L	932600	932633	mdg1	9	7443	5.0	4.0	4.5	1.6	7461	chr3L	925172	intron	Glut1 +	chr3L	928902	intron	Glut1 +	chr3L	932633	intron	Glut1 +	chr3L_9_925001	chr3L_925001	RAL-377
1594	chr3L	939761	939801	chr3L	940902	940912	jockey	13	1138	3.0	7.5	5.2	2.1	1151	chr3L	939761	intron	Glut1 +	chr3L	940336	intron	Glut1 +	chr3L	940912	intron	Glut1 +	chr3L_13_940001	chr3L_940001	RAL-377
1601	chr3L	1047380	1047384	chr3L	1055166	1055194	412	4	7795	1.0	1.5	1.2	1.8	7814	chr3L	1047380	intron	bab1 -	chr3L	1051287	intron	bab1 -	chr3L	1055194	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-377
1603	chr3L	1154117	1154160	chr3L	1163287	1163329	roo	11	9169	5.5	3.0	4.2	2.1	9212	chr3L	1154117	intron	bab2 -	chr3L	1158723	intron	bab2 -	chr3L	1163329	intron	bab2 -	chr3L_11_1155001	chr3L_1155001	RAL-377
1604	chr3L	1219583	1219620	chr3L	1227336	1227352	412	10	7748	2.5	2.5	2.5	2.9	7769	chr3L	1219583	intron	mwh +	chr3L	1223468	intron	mwh +	chr3L	1227352	intron	mwh +	chr3L_10_1220001	chr3L_1220001	RAL-377
1613	chr3L	1505980	1506032	chr3L	1513597	1513649	17.6	23	7615	5.0	4.0	4.5	4.2	7669	chr3L	1505980	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513649	intron,intron	Psa +,cue -	chr3L_23_1505001	chr3L_1505001	RAL-377
1618	chr3L	1740836	1740883	chr3L	1741099	1741145	pogo	18	258	5.5	5.5	5.5	2.8	309	chr3L	1740836	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741145	intron	Gk +	chr3L_18_1740001	chr3L_1740001	RAL-377
1633	chr3L	2108236	2108283	chr3L	2113460	2113507	copia	18	5224	5.5	9.5	7.5	2.1	5271	chr3L	2108236	intron	sls -	chr3L	2110872	intron	sls -	chr3L	2113507	intron	sls -	chr3L_18_2110001	chr3L_2110001	RAL-377
1642	chr3L	2447495	2447526	chr3L	2456665	2456702	roo	7	9173	2.5	7.5	5.0	1.2	9207	chr3L	2447495	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456702	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-377
1652	chr3L	2927822	2927868	chr3L	2936118	2936165	Tirant	13	8296	3.5	4.0	3.8	2.7	8343	chr3L	2927822	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936165	intron	Shab +	chr3L_13_2930001	chr3L_2930001	RAL-377
1653	chr3L	2966710	2966724	chr3L	2974155	2974169	mdg1	6	7445	7.0	6.0	6.5	0.8	7459	chr3L	2966710	intergenic	not near genes	chr3L	2970440	intergenic	not near genes	chr3L	2974169	intergenic	not near genes	chr3L_6_2970001	chr3L_2970001	RAL-377
1658	chr3L	3040317	3040327	chr3L	3042126	3042136	S-element	4	1809	10.5	5.5	8.0	0.4	1819	chr3L	3040317	3` UTR	CG2162 +	chr3L	3041226	intergenic	not near genes	chr3L	3042136	intergenic	Jafrac2 +	chr3L_4_3040001	chr3L_3040001	RAL-377
1659	chr3L	3040330	3040356	chr3L	3042123	3042165	S-element	11	1807	5.0	5.5	5.2	1.8	1835	chr3L	3040330	3` UTR	CG2162 +	chr3L	3041248	intergenic	not near genes	chr3L	3042165	intergenic	Jafrac2 +	chr3L_11_3040001	chr3L_3040001	RAL-377
1660	chr3L	3051729	3051754	chr3L	3051987	3052012	pogo	5	258	6.0	1.0	3.5	1.1	283	chr3L	3051729	3` UTR	CG32485 +	chr3L	3051870	intergenic	CG32485 +	chr3L	3052012	intergenic	CG32485 +	chr3L_5_3050001	chr3L_3050001	RAL-377
1661	chr3L	3061275	3061316	chr3L	3069867	3069912	Tirant	5	8599	0.0	3.5	1.8	1.8	8637	chr3L	3061275	intron	CG32486 -	chr3L	3065594	intron	CG32486 -	chr3L	3069912	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	RAL-377
1667	chr3L	3281440	3281472	chr3L	3281936	3281988	Doc	19	509	1.5	3.5	2.5	5.4	548	chr3L	3281440	intron	CG12017 +	chr3L	3281714	intron	CG12017 +	chr3L	3281988	intron	CG12017 +	chr3L_19_3280001	chr3L_3280001	RAL-377
1672	chr3L	3475071	3475099	chr3L	3475525	3475561	jockey	6	462	2.0	3.0	2.5	1.7	490	chr3L	3475071	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475561	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-377
1680	chr3L	3601282	3601329	chr3L	3606613	3606660	copia	13	5329	5.0	5.0	5.0	2.2	5378	chr3L	3601282	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606660	intron	Eip63E +	chr3L_13_3600001	chr3L_3600001	RAL-377
1690	chr3L	3833718	3833751	chr3L	3833979	3834012	pogo	16	261	5.5	1.5	3.5	3.6	294	chr3L	3833718	intron	enc +	chr3L	3833865	intron	enc +	chr3L	3834012	intron	enc +	chr3L_16_3830001	chr3L_3830001	RAL-377
1699	chr3L	4328733	4328760	chr3L	4336249	4336277	412	5	7516	4.0	4.0	4.0	1.0	7544	chr3L	4328733	intron	Cip4 -	chr3L	4332505	intron	Cip4 -	chr3L	4336277	exon	Cip4 -	chr3L_5_4330001	chr3L_4330001	RAL-377
1716	chr3L	4901115	4901153	chr3L	4907325	4907338	diver	12	6206	7.0	6.0	6.5	1.6	6223	chr3L	4901115	intergenic	CG13704 +	chr3L	4904226	intergenic	not near genes	chr3L	4907338	intergenic	not near genes	chr3L_12_4900001	chr3L_4900001	RAL-377
1720	chr3L	5034139	5034190	chr3L	5043311	5043362	roo	16	9168	2.5	4.5	3.5	3.6	9223	chr3L	5034139	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043362	intron	Con -	chr3L_16_5035001	chr3L_5035001	RAL-377
1721	chr3L	5045448	5045485	chr3L	5050249	5050286	Doc	15	4800	6.0	5.5	5.8	2.2	4838	chr3L	5045448	intron	Con -	chr3L	5047867	intron	Con -	chr3L	5050286	intron	Con -	chr3L_15_5045001	chr3L_5045001	RAL-377
1730	chr3L	5299155	5299172	chr3L	5306601	5306617	Quasimodo	5	7446	3.0	0.0	1.5	2.0	7462	chr3L	5299155	intergenic	not near genes	chr3L	5302886	intergenic	not near genes	chr3L	5306617	intergenic	not near genes	chr3L_5_5300001	chr3L_5300001	RAL-377
1743	chr3L	5910014	5910063	chr3L	5910275	5910324	pogo	24	261	8.5	5.0	6.8	3.1	310	chr3L	5910014	intron	CG13288 +	chr3L	5910169	intron	CG13288 +	chr3L	5910324	intron	CG13288 +	chr3L_24_5910001	chr3L_5910001	RAL-377
1745	chr3L	5926299	5926348	chr3L	5926509	5926542	BS	16	203	2.5	5.0	3.8	3.3	243	chr3L	5926299	intron	Vap-33B +	chr3L	5926420	intron	Vap-33B +	chr3L	5926542	intron	Vap-33B +	chr3L_16_5925001	chr3L_5925001	RAL-377
1746	chr3L	6001664	6001716	chr3L	6004384	6004436	jockey	11	2719	5.5	2.0	3.8	2.3	2772	chr3L	6001664	intron	PVRAP +	chr3L	6003050	intron	PVRAP +	chr3L	6004436	intron	PVRAP +	chr3L_11_6000001	chr3L_6000001	RAL-377
1748	chr3L	6040352	6040392	chr3L	6042727	6042768	Doc	12	2375	0.0	5.0	2.5	3.4	2416	chr3L	6040352	intergenic	Jon65Aiv +	chr3L	6041560	intergenic	not near genes	chr3L	6042768	intergenic	not near genes	chr3L_12_6040001	chr3L_6040001	RAL-377
1754	chr3L	6220903	6220917	chr3L	6230074	6230089	roo	9	9172	8.0	7.5	7.8	1.0	9186	chr3L	6220903	5` UTR	pncr008:3L +	chr3L	6225496	intergenic	not near genes	chr3L	6230089	intergenic	not near genes	chr3L_9_6225001	chr3L_6225001	RAL-377
1755	chr3L	6220922	6220938	chr3L	6230067	6230110	roo	5	9167	6.5	5.5	6.0	0.7	9188	chr3L	6220922	5` UTR	pncr008:3L +	chr3L	6225516	intergenic	not near genes	chr3L	6230110	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-377
1759	chr3L	6334990	6335037	chr3L	6335479	6335528	297	12	489	3.5	4.5	4.0	2.4	538	chr3L	6334990	intron	CG13300 -	chr3L	6335259	intron	CG13300 -	chr3L	6335528	intron	CG13300 -	chr3L_12_6335001	chr3L_6335001	RAL-377
1760	chr3L	6405640	6405686	chr3L	6432124	6432170	roo	22	26484	5.5	4.0	4.8	3.8	26530	chr3L	6405640	intron	CG42747 +	chr3L	6418905	intron	CG42747 +	chr3L	6432170	intron	CG42747 +	chr3L_22_6415001	chr3L_6415001	RAL-377
1768	chr3L	6781103	6781148	chr3L	6783136	6783181	Doc	15	2033	8.5	4.5	6.5	2.0	2078	chr3L	6781103	intergenic	not near genes	chr3L	6782142	intergenic	not near genes	chr3L	6783181	intergenic	not near genes	chr3L_15_6780001	chr3L_6780001	RAL-377
1769	chr3L	6855917	6855934	chr3L	6860721	6860738	Doc	5	4799	2.0	1.0	1.5	2.0	4821	chr3L	6855917	intergenic	not near genes	chr3L	6858328	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-377
1770	chr3L	6887502	6887538	chr3L	6895014	6895050	roo	7	7511	4.5	5.0	4.8	1.2	7548	chr3L	6887502	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895050	intergenic	not near genes	chr3L_7_6890001	chr3L_6890001	RAL-377
1789	chr3L	7377295	7377346	chr3L	7380420	7380438	297	17	3122	3.5	4.5	4.0	3.4	3143	chr3L	7377295	intron	SMSr -	chr3L	7378866	intron	SMSr -	chr3L	7380438	intron	SMSr -	chr3L_17_7375001	chr3L_7375001	RAL-377
1795	chr3L	7498744	7498775	chr3L	7503542	7503573	F-element	8	4798	4.5	7.5	6.0	1.1	4829	chr3L	7498744	5` UTR	CG8539 -	chr3L	7501158	intergenic	not near genes	chr3L	7503573	intergenic	not near genes	chr3L_8_7500001	chr3L_7500001	RAL-377
1799	chr3L	7793703	7793736	chr3L	7800775	7800808	297	17	7072	4.5	6.5	5.5	2.6	7105	chr3L	7793703	intron	CG32369 -	chr3L	7797256	intron	CG32369 -	chr3L	7800808	intron	CG32369 -	chr3L_17_7795001	chr3L_7795001	RAL-377
1801	chr3L	7886496	7886546	chr3L	7889034	7889084	Stalker4	14	2537	3.5	1.0	2.2	4.4	2588	chr3L	7886496	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889084	intron	CG32365 +	chr3L_14_7885001	chr3L_7885001	RAL-377
1802	chr3L	7916814	7916856	chr3L	7926005	7926047	roo	11	9191	6.0	3.5	4.8	1.9	9233	chr3L	7916814	3` UTR	syd -	chr3L	7921430	intron	syd -	chr3L	7926047	3` UTR	syd -	chr3L_11_7920001	chr3L_7920001	RAL-377
1803	chr3L	7985358	7985398	chr3L	7987707	7987735	NOF	13	2346	9.0	4.0	6.5	1.7	2377	chr3L	7985358	intron	nmo +	chr3L	7986546	intron	nmo +	chr3L	7987735	intron	nmo +	chr3L_13_7985001	chr3L_7985001	RAL-377
1805	chr3L	8019686	8019735	chr3L	8024118	8024166	NOF	9	4435	5.5	2.0	3.8	1.9	4480	chr3L	8019686	intron	nmo +	chr3L	8021926	intron	nmo +	chr3L	8024166	intron	nmo +	chr3L_9_8020001	chr3L_8020001	RAL-377
1816	chr3L	8481785	8481803	chr3L	8490938	8490943	roo	9	9158	3.0	4.5	3.8	1.9	9158	chr3L	8481785	intron	CG43163 -	chr3L	8486364	intron	CG43163 -	chr3L	8490943	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	RAL-377
1817	chr3L	8498282	8498321	chr3L	8505764	8505808	blood	10	7485	8.0	7.0	7.5	1.2	7526	chr3L	8498282	intron	CG43163 -	chr3L	8502045	intron	CG43163 -	chr3L	8505808	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	RAL-377
1821	chr3L	8791261	8791309	chr3L	8796700	8796748	I-element	8	5440	4.0	0.0	2.0	2.7	5487	chr3L	8791261	exon	Fhos +	chr3L	8794004	intron	Fhos +	chr3L	8796748	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	RAL-377
1828	chr3L	9076911	9076953	chr3L	9084487	9084533	412	14	7578	6.5	4.5	5.5	2.2	7622	chr3L	9076911	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084533	exon	Tequila +	chr3L_14_9080001	chr3L_9080001	RAL-377
1829	chr3L	9130539	9130582	chr3L	9134320	9134347	412	8	3776	5.0	5.5	5.2	1.3	3808	chr3L	9130539	intergenic	bol -	chr3L	9132443	intergenic	not near genes	chr3L	9134347	intergenic	Dhpr +	chr3L_8_9130001	chr3L_9130001	RAL-377
1830	chr3L	9164681	9164728	chr3L	9166167	9166198	hobo	21	1484	6.5	0.0	3.2	5.0	1517	chr3L	9164681	intron	Rdl -	chr3L	9165440	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_21_9165001	chr3L_9165001	RAL-377
1832	chr3L	9219233	9219243	chr3L	9219925	9219935	jockey	6	691	8.5	4.0	6.2	0.8	702	chr3L	9219233	intergenic	not near genes	chr3L	9219584	intergenic	not near genes	chr3L	9219935	intergenic	not near genes	chr3L_6_9215001	chr3L_9215001	RAL-377
1833	chr3L	9219245	9219272	chr3L	9219921	9219962	jockey	11	684	5.0	4.0	4.5	2.0	717	chr3L	9219245	intergenic	not near genes	chr3L	9219604	intergenic	not near genes	chr3L	9219962	intergenic	not near genes	chr3L_11_9215001	chr3L_9215001	RAL-377
1835	chr3L	9270602	9270647	chr3L	9278377	9278400	roo	8	7770	0.5	1.0	0.8	4.4	7798	chr3L	9270602	intron	GluRIB +	chr3L	9274501	intron	GluRIB +	chr3L	9278400	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	RAL-377
1839	chr3L	9443492	9443519	chr3L	9445303	9445323	S-element	7	1809	10.5	0.0	5.2	1.1	1831	chr3L	9443492	intron	CG33926 +	chr3L	9444408	intron	CG33926 +	chr3L	9445323	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	RAL-377
1840	chr3L	9501685	9501706	chr3L	9502188	9502212	roo	10	506	6.5	0.0	3.2	2.4	527	chr3L	9501685	intron	path -	chr3L	9501948	intron	path -	chr3L	9502212	intron	path -	chr3L_10_9500001	chr3L_9500001	RAL-377
1844	chr3L	9533741	9533780	chr3L	9541314	9541359	412	6	7576	4.0	5.5	4.8	1.0	7618	chr3L	9533741	intergenic	not near genes	chr3L	9537550	intergenic	not near genes	chr3L	9541359	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	RAL-377
1846	chr3L	9571892	9571930	chr3L	9572260	9572298	jockey	23	368	4.0	7.5	5.8	3.4	406	chr3L	9571892	intron	CG42673 +	chr3L	9572095	intron	CG42673 +	chr3L	9572298	intron	CG42673 +	chr3L_23_9570001	chr3L_9570001	RAL-377
1847	chr3L	9575895	9575941	chr3L	9580993	9581030	jockey	13	5096	2.5	6.0	4.2	2.5	5135	chr3L	9575895	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581030	intron	CG42673 +	chr3L_13_9575001	chr3L_9575001	RAL-377
1856	chr3L	9929667	9929698	chr3L	9938468	9938499	roo	9	8800	3.5	10.5	7.0	1.1	8832	chr3L	9929667	intron	CG34356 +	chr3L	9934083	intron	CG34356 +	chr3L	9938499	intron	CG34356 +	chr3L_9_9930001	chr3L_9930001	RAL-377
1863	chr3L	10060098	10060110	chr3L	10067697	10067709	17.6	6	7599	9.5	6.5	8.0	0.7	7611	chr3L	10060098	intron	dpr6 +	chr3L	10063904	intron	dpr6 +	chr3L	10067709	intron	dpr6 +	chr3L_6_10060001	chr3L_10060001	RAL-377
1874	chr3L	10414930	10414969	chr3L	10417322	10417361	Doc	14	2392	0.0	3.5	1.8	5.0	2431	chr3L	10414930	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417361	intergenic	not near genes	chr3L_14_10415001	chr3L_10415001	RAL-377
1887	chr3L	11087040	11087084	chr3L	11088849	11088893	S-element	13	1807	4.0	3.0	3.5	2.9	1853	chr3L	11087040	intron	JIL-1 -	chr3L	11087966	intron	JIL-1 -	chr3L	11088893	intron	JIL-1 -	chr3L_13_11085001	chr3L_11085001	RAL-377
1889	chr3L	11105280	11105323	chr3L	11107011	11107034	X-element	10	1728	5.5	3.5	4.5	1.8	1754	chr3L	11105280	intergenic	not near genes	chr3L	11106157	intergenic	not near genes	chr3L	11107034	exon	CG32073 -	chr3L_10_11105001	chr3L_11105001	RAL-377
1895	chr3L	11264447	11264496	chr3L	11271418	11271439	17.6	8	6968	3.0	5.0	4.0	1.6	6992	chr3L	11264447	intergenic	not near genes	chr3L	11267943	intergenic	not near genes	chr3L	11271439	intergenic	not near genes	chr3L_8_11265001	chr3L_11265001	RAL-377
1896	chr3L	11329681	11329723	chr3L	11332901	11332929	jockey	8	3214	2.0	2.5	2.2	2.5	3248	chr3L	11329681	intergenic	not near genes	chr3L	11331305	intergenic	not near genes	chr3L	11332929	intergenic	not near genes	chr3L_8_11330001	chr3L_11330001	RAL-377
1901	chr3L	11564791	11564809	chr3L	11572415	11572428	412	4	7624	1.5	4.0	2.8	1.1	7637	chr3L	11564791	exon	CG33267 +	chr3L	11568610	intron	CG33267 +	chr3L	11572428	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-377
1907	chr3L	11723067	11723114	chr3L	11727882	11727929	Doc	17	4815	6.5	6.0	6.2	2.4	4862	chr3L	11723067	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727929	3` UTR	Bmcp +	chr3L_17_11725001	chr3L_11725001	RAL-377
1919	chr3L	11864540	11864583	chr3L	11865853	11865898	pogo	17	1313	5.0	6.0	5.5	2.6	1358	chr3L	11864540	intron	CG44837 -	chr3L	11865219	intron	CG44837 -	chr3L	11865898	intron	CG44837 -	chr3L_17_11865001	chr3L_11865001	RAL-377
1941	chr3L	12874923	12874956	chr3L	12877235	12877268	jockey	11	2312	3.0	7.5	5.2	1.8	2345	chr3L	12874923	intergenic	not near genes	chr3L	12876096	intergenic	not near genes	chr3L	12877268	intergenic	not near genes	chr3L_11_12875001	chr3L_12875001	RAL-377
1943	chr3L	12919259	12919302	chr3L	12924752	12924768	Rt1c	7	5485	5.0	5.5	5.2	1.1	5509	chr3L	12919259	intergenic	not near genes	chr3L	12922014	intergenic	not near genes	chr3L	12924768	intergenic	not near genes	chr3L_7_12920001	chr3L_12920001	RAL-377
1945	chr3L	12957768	12957816	chr3L	12962269	12962318	copia	14	4502	2.0	6.5	4.2	2.7	4550	chr3L	12957768	intergenic	not near genes	chr3L	12960043	intergenic	not near genes	chr3L	12962318	intergenic	not near genes	chr3L_14_12960001	chr3L_12960001	RAL-377
1962	chr3L	13525143	13525184	chr3L	13532959	13532997	roo	16	7814	7.0	6.0	6.5	2.1	7854	chr3L	13525143	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532997	intergenic	not near genes	chr3L_16_13525001	chr3L_13525001	RAL-377
1969	chr3L	13804524	13804569	chr3L	13822830	13822875	roo	14	18306	1.0	6.0	3.5	3.1	18351	chr3L	13804524	intergenic	not near genes	chr3L	13813700	intergenic	not near genes	chr3L	13822875	intergenic	not near genes	chr3L_14_13810001	chr3L_13810001	RAL-377
1978	chr3L	14245571	14245593	chr3L	14245674	14245707	1360	10	112	3.5	5.0	4.2	1.9	136	chr3L	14245571	3` UTR	CR44561 -	chr3L	14245639	3` UTR	CR44561 -	chr3L	14245707	intergenic	CR44561 -,CR44560 +	chr3L_10_14245001	chr3L_14245001	RAL-377
1979	chr3L	14267354	14267390	chr3L	14271814	14271842	F-element	11	4457	7.0	9.5	8.2	1.2	4488	chr3L	14267354	intergenic	not near genes	chr3L	14269598	intergenic	not near genes	chr3L	14271842	intergenic	not near genes	chr3L_11_14265001	chr3L_14265001	RAL-377
1980	chr3L	14295963	14296008	chr3L	14296469	14296513	roo	12	504	3.5	9.0	6.2	1.7	550	chr3L	14295963	intron	fz +	chr3L	14296238	intron	fz +	chr3L	14296513	intron	fz +	chr3L_12_14295001	chr3L_14295001	RAL-377
1990	chr3L	14468431	14468475	chr3L	14473657	14473701	copia	17	5225	4.5	5.0	4.8	2.9	5270	chr3L	14468431	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473701	intron	bbg -	chr3L_17_14470001	chr3L_14470001	RAL-377
1994	chr3L	14721169	14721210	chr3L	14723032	14723070	Rt1c	10	1857	3.0	3.5	3.2	2.4	1901	chr3L	14721169	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723070	intron	ome +	chr3L_10_14720001	chr3L_14720001	RAL-377
1996	chr3L	14725582	14725623	chr3L	14728595	14728637	Doc	7	3014	0.0	7.5	3.8	1.5	3055	chr3L	14725582	intron	ome +	chr3L	14727110	intron	ome +	chr3L	14728637	intron	ome +	chr3L_7_14725001	chr3L_14725001	RAL-377
1998	chr3L	14825147	14825158	chr3L	14832894	14832905	Stalker2	5	7747	0.0	5.5	2.8	1.3	7758	chr3L	14825147	intron	CG17839 +	chr3L	14829026	intron	CG17839 +	chr3L	14832905	intron	CG17839 +	chr3L_5_14825001	chr3L_14825001	RAL-377
2003	chr3L	14970741	14970764	chr3L	14971071	14971094	F-element	10	330	5.5	3.0	4.2	1.9	353	chr3L	14970741	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971094	intergenic	not near genes	chr3L_10_14970001	chr3L_14970001	RAL-377
2005	chr3L	15085036	15085076	chr3L	15086222	15086262	1360	11	1185	6.0	5.0	5.5	1.7	1226	chr3L	15085036	intron	cp309 -	chr3L	15085649	intron	cp309 -	chr3L	15086262	intron	cp309 -	chr3L_11_15085001	chr3L_15085001	RAL-377
2013	chr3L	15295746	15295796	chr3L	15298609	15298659	gypsy5	26	2863	4.5	7.5	6.0	3.7	2913	chr3L	15295746	intergenic	not near genes	chr3L	15297202	intergenic	not near genes	chr3L	15298659	intergenic	Best4 +	chr3L_26_15295001	chr3L_15295001	RAL-377
2018	chr3L	15423740	15423745	chr3L	15426604	15426608	opus	7	2864	7.5	3.0	5.2	1.1	2868	chr3L	15423740	intergenic	not near genes	chr3L	15425174	intergenic	not near genes	chr3L	15426608	intergenic	not near genes	chr3L_7_15425001	chr3L_15425001	RAL-377
2019	chr3L	15423763	15423782	chr3L	15426627	15426646	opus	7	2864	4.5	7.5	6.0	1.0	2883	chr3L	15423763	intergenic	not near genes	chr3L	15425204	intergenic	not near genes	chr3L	15426646	intergenic	not near genes	chr3L_7_15425001	chr3L_15425001	RAL-377
2034	chr3L	15929175	15929226	chr3L	15938342	15938393	roo	17	9167	5.0	3.5	4.2	3.3	9218	chr3L	15929175	intron	Pka-C3 -	chr3L	15933784	intron	Pka-C3 -	chr3L	15938393	intron	Pka-C3 -	chr3L_17_15930001	chr3L_15930001	RAL-377
2038	chr3L	16184086	16184132	chr3L	16188925	16188960	X-element	10	4836	0.5	1.5	1.0	5.0	4874	chr3L	16184086	intergenic	not near genes	chr3L	16186523	intergenic	not near genes	chr3L	16188960	intergenic	not near genes	chr3L_10_16185001	chr3L_16185001	RAL-377
2050	chr3L	16443827	16443872	chr3L	16446187	16446232	Doc	13	2359	7.5	3.5	5.5	2.0	2405	chr3L	16443827	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446232	intron,intron	CG33158 +,dsx-c73A -	chr3L_13_16445001	chr3L_16445001	RAL-377
2052	chr3L	16493958	16494012	chr3L	16494495	16494523	jockey	20	532	5.0	7.0	6.0	2.9	565	chr3L	16493958	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494240	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494523	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_20_16490001	chr3L_16490001	RAL-377
2054	chr3L	16616514	16616540	chr3L	16621856	16621876	297	7	5343	6.0	6.5	6.2	1.0	5362	chr3L	16616514	3` UTR	Abl -	chr3L	16619195	3` UTR	Abl -	chr3L	16621876	3` UTR	Abl -	chr3L_7_16615001	chr3L_16615001	RAL-377
2057	chr3L	16684002	16684043	chr3L	16689243	16689284	copia	15	5241	6.5	4.5	5.5	2.3	5282	chr3L	16684002	intron,intron	Lasp -,CG43954 -	chr3L	16686643	intron,intron	Lasp -,CG43954 -	chr3L	16689284	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_15_16685001	chr3L_16685001	RAL-377
2072	chr3L	16945722	16945759	chr3L	16954887	16954901	roo	16	9166	3.5	3.5	3.5	3.6	9179	chr3L	16945722	exon	Obp73a +	chr3L	16950312	intergenic	not near genes	chr3L	16954901	5` UTR	Nc73EF +	chr3L_16_16950001	chr3L_16950001	RAL-377
2074	chr3L	17034920	17034967	chr3L	17035128	17035175	G2	13	208	3.0	5.0	4.0	2.6	255	chr3L	17034920	intergenic	not near genes	chr3L	17035048	intergenic	not near genes	chr3L	17035175	intergenic	beg +	chr3L_13_17035001	chr3L_17035001	RAL-377
2075	chr3L	17084988	17085033	chr3L	17094157	17094202	roo	20	9169	5.5	6.5	6.0	2.9	9214	chr3L	17084988	intron	Rbp6 -	chr3L	17089595	intron	Rbp6 -	chr3L	17094202	intron	Rbp6 -	chr3L_20_17085001	chr3L_17085001	RAL-377
2083	chr3L	17516961	17517010	chr3L	17524539	17524579	412	14	7572	4.0	5.0	4.5	2.5	7618	chr3L	17516961	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524579	3` UTR	CG7564 +	chr3L_14_17520001	chr3L_17520001	RAL-377
2090	chr3L	17730829	17730880	chr3L	17738179	17738230	mdg1	19	7349	5.0	3.0	4.0	3.8	7401	chr3L	17730829	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738230	intron	Ccn +	chr3L_19_17730001	chr3L_17730001	RAL-377
2093	chr3L	17799794	17799842	chr3L	17801603	17801651	S-element	18	1808	8.5	8.0	8.2	2.0	1857	chr3L	17799794	intron	NUCB1 -	chr3L	17800722	intron	NUCB1 -	chr3L	17801651	intron	NUCB1 -	chr3L_18_17800001	chr3L_17800001	RAL-377
2096	chr3L	17918352	17918404	chr3L	17921175	17921227	opus	9	2822	3.0	4.5	3.8	1.9	2875	chr3L	17918352	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921227	intergenic	not near genes	chr3L_9_17915001	chr3L_17915001	RAL-377
2100	chr3L	18047688	18047735	chr3L	18056765	18056812	roo	22	9076	5.0	7.0	6.0	3.1	9124	chr3L	18047688	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056812	intron	Eip75B -	chr3L_22_18050001	chr3L_18050001	RAL-377
2122	chr3L	18506112	18506159	chr3L	18509594	18509642	F-element	7	3478	3.0	4.5	3.8	1.5	3530	chr3L	18506112	intergenic	not near genes	chr3L	18507877	intergenic	not near genes	chr3L	18509642	intergenic	not near genes	chr3L_7_18505001	chr3L_18505001	RAL-377
2123	chr3L	18528611	18528661	chr3L	18537792	18537842	roo	17	9181	6.0	3.5	4.8	2.9	9231	chr3L	18528611	intergenic	not near genes	chr3L	18533226	intergenic	not near genes	chr3L	18537842	intergenic	not near genes	chr3L_17_18530001	chr3L_18530001	RAL-377
2127	chr3L	18593929	18593981	chr3L	18595929	18595981	Doc	19	1998	4.5	4.0	4.2	3.7	2052	chr3L	18593929	intergenic	term -	chr3L	18594955	intergenic	not near genes	chr3L	18595981	intergenic	CR45389 +	chr3L_19_18590001	chr3L_18590001	RAL-377
2132	chr3L	18710771	18710792	chr3L	18718741	18718762	Stalker2	10	7970	3.0	1.0	2.0	3.3	7991	chr3L	18710771	intergenic	not near genes	chr3L	18714766	intergenic	not near genes	chr3L	18718762	intergenic	not near genes	chr3L_10_18710001	chr3L_18710001	RAL-377
2138	chr3L	18772389	18772434	chr3L	18781089	18781135	roo	19	8701	3.0	4.5	3.8	4.0	8746	chr3L	18772389	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781135	intron	ftz-f1 -	chr3L_19_18775001	chr3L_18775001	RAL-377
2143	chr3L	18833768	18833807	chr3L	18834952	18834991	1360	8	1180	9.0	8.5	8.8	0.8	1223	chr3L	18833768	intron	Indy -	chr3L	18834380	intron	Indy -	chr3L	18834991	intron	Indy -	chr3L_8_18830001	chr3L_18830001	RAL-377
2153	chr3L	19008835	19008866	chr3L	19009175	19009224	jockey	8	351	1.5	2.0	1.8	2.9	389	chr3L	19008835	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009224	intron	nkd -	chr3L_8_19005001	chr3L_19005001	RAL-377
2156	chr3L	19115635	19115667	chr3L	19115821	19115855	BS	7	188	3.5	2.5	3.0	1.8	220	chr3L	19115635	intron	CG14082 -	chr3L	19115745	intron	CG14082 -	chr3L	19115855	intron	CG14082 -	chr3L_7_19115001	chr3L_19115001	RAL-377
2157	chr3L	19117027	19117042	chr3L	19124489	19124509	mdg1	5	7463	15.0	4.5	9.8	0.5	7482	chr3L	19117027	intron	CG14082 -	chr3L	19120768	intron	CG14082 -	chr3L	19124509	intron	CG14082 -	chr3L_5_19120001	chr3L_19120001	RAL-377
2158	chr3L	19117053	19117076	chr3L	19124487	19124543	mdg1	10	7458	6.5	4.5	5.5	1.5	7490	chr3L	19117053	intron	CG14082 -	chr3L	19120798	intron	CG14082 -	chr3L	19124543	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	RAL-377
2163	chr3L	19208042	19208086	chr3L	19209435	19209467	Doc	9	1388	5.5	2.0	3.8	1.9	1425	chr3L	19208042	intron	fz2 -	chr3L	19208754	intron	fz2 -	chr3L	19209467	intron	fz2 -	chr3L_9_19205001	chr3L_19205001	RAL-377
2177	chr3L	19820282	19820319	chr3L	19827851	19827888	412	16	7569	3.5	5.5	4.5	2.9	7606	chr3L	19820282	intron	Deaf1 +	chr3L	19824085	intron	Deaf1 +	chr3L	19827888	intron	Deaf1 +	chr3L_16_19820001	chr3L_19820001	RAL-377
2178	chr3L	19848493	19848527	chr3L	19857698	19857737	roo	9	9205	7.5	7.5	7.5	1.1	9244	chr3L	19848493	intron	Papss +	chr3L	19853115	intron	Papss +	chr3L	19857737	intron	Papss +	chr3L_9_19850001	chr3L_19850001	RAL-377
2186	chr3L	20113641	20113688	chr3L	20122918	20122965	roo	11	9275	4.5	5.5	5.0	1.8	9324	chr3L	20113641	intergenic	not near genes	chr3L	20118303	intergenic	not near genes	chr3L	20122965	intergenic	not near genes	chr3L_11_20115001	chr3L_20115001	RAL-377
2190	chr3L	20257316	20257360	chr3L	20258455	20258500	pogo	17	1139	3.0	2.0	2.5	4.9	1184	chr3L	20257316	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258500	intron	rdgC +	chr3L_17_20255001	chr3L_20255001	RAL-377
2196	chr3L	20476735	20476786	chr3L	20484354	20484370	springer	24	7617	6.0	8.5	7.2	2.9	7635	chr3L	20476735	3` UTR	isoQC +	chr3L	20480552	intergenic	not near genes	chr3L	20484370	3` UTR	ZnT77C -	chr3L_24_20480001	chr3L_20480001	RAL-377
2197	chr3L	20487647	20487663	chr3L	20488118	20488134	INE-1	8	471	10.5	2.5	6.5	1.1	487	chr3L	20487647	intron	ZnT77C -	chr3L	20487890	intron	ZnT77C -	chr3L	20488134	exon	ZnT77C -	chr3L_8_20485001	chr3L_20485001	RAL-377
2203	chr3L	20821274	20821311	chr3L	20824763	20824800	NOF	8	3489	8.0	9.0	8.5	0.8	3526	chr3L	20821274	intron	Pka-R1 +	chr3L	20823037	intron	Pka-R1 +	chr3L	20824800	intron	Pka-R1 +	chr3L_8_20820001	chr3L_20820001	RAL-377
2207	chr3L	21014906	21014947	chr3L	21023399	21023441	Tirant	15	8488	2.5	5.0	3.8	3.1	8535	chr3L	21014906	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023441	intron	skd -	chr3L_15_21015001	chr3L_21015001	RAL-377
2211	chr3L	21151850	21151896	chr3L	21156954	21157000	flea	14	5104	4.0	6.5	5.2	2.3	5150	chr3L	21151850	intron	Ac78C -	chr3L	21154425	intron	Ac78C -	chr3L	21157000	intron	Ac78C -	chr3L_14_21150001	chr3L_21150001	RAL-377
2214	chr3L	21306125	21306178	chr3L	21315304	21315357	roo	22	9178	5.5	5.5	5.5	3.4	9232	chr3L	21306125	3` UTR	CG7632 +	chr3L	21310741	intron	Pc -	chr3L	21315357	3` UTR	Pc -	chr3L_22_21310001	chr3L_21310001	RAL-377
2223	chr3L	21498826	21498840	chr3L	21500482	21500496	1360	4	1656	12.5	3.5	8.0	0.4	1670	chr3L	21498826	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499661	intron	Glg1 -	chr3L	21500496	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	RAL-377
2224	chr3L	21498841	21498869	chr3L	21500477	21500518	1360	8	1651	7.0	3.0	5.0	1.3	1677	chr3L	21498841	intron	Glg1 -	chr3L	21499680	intron	Glg1 -	chr3L	21500518	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	RAL-377
2225	chr3L	21501153	21501168	chr3L	21501267	21501281	1360	11	114	3.0	7.5	5.2	1.8	128	chr3L	21501153	intron	Glg1 -	chr3L	21501217	intron	Glg1 -	chr3L	21501281	intron	Glg1 -	chr3L_11_21500001	chr3L_21500001	RAL-377
2227	chr3L	21749301	21749333	chr3L	21754481	21754513	Doc	8	5177	3.5	4.0	3.8	1.7	5212	chr3L	21749301	intron	Syn1 -	chr3L	21751907	intron	Syn1 -	chr3L	21754513	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-377
2243	chr3L	22099656	22099704	chr3L	22105862	22105910	3S18	18	6206	11.0	5.5	8.2	2.0	6254	chr3L	22099656	intergenic	not near genes	chr3L	22102783	intergenic	not near genes	chr3L	22105910	intergenic	not near genes	chr3L_18_22100001	chr3L_22100001	RAL-377
2248	chr3L	22555751	22555800	chr3L	22563241	22563243	blood	13	7480	3.0	1.0	2.0	4.3	7492	chr3L	22555751	intergenic	not near genes	chr3L	22559497	intergenic	not near genes	chr3L	22563243	intergenic	not near genes	chr3L_13_22555001	chr3L_22555001	RAL-377
2250	chr3L	22577632	22577648	chr3L	22582440	22582456	Doc	6	4808	3.0	5.0	4.0	1.2	4824	chr3L	22577632	intergenic	not near genes	chr3L	22580044	intergenic	not near genes	chr3L	22582456	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-377
2251	chr3L	22617170	22617219	chr3L	22624642	22624681	blood	19	7471	4.5	4.5	4.5	3.5	7511	chr3L	22617170	intron	CG14459 -	chr3L	22620926	intron	CG14459 -	chr3L	22624681	intron	CG14459 -	chr3L_19_22620001	chr3L_22620001	RAL-377
2254	chr3L	22761368	22761409	chr3L	22766822	22766863	Ivk	17	5454	8.5	6.5	7.5	2.0	5495	chr3L	22761368	intron	SPoCk +	chr3L	22764116	intron	SPoCk +	chr3L	22766863	intron	SPoCk +	chr3L_17_22760001	chr3L_22760001	RAL-377
2257	chr3L	22865969	22866011	chr3L	22867122	22867143	Doc	16	1152	7.0	8.0	7.5	1.9	1174	chr3L	22865969	intron	CG33170 +	chr3L	22866556	intron	CG33170 +	chr3L	22867143	intron	CG33170 +	chr3L_16_22865001	chr3L_22865001	RAL-377
2262	chr3L	22989842	22989894	chr3L	22996834	22996888	297	18	6990	2.5	7.5	5.0	3.0	7046	chr3L	22989842	intergenic	not near genes	chr3L	22993365	intergenic	not near genes	chr3L	22996888	intergenic	not near genes	chr3L_18_22990001	chr3L_22990001	RAL-377
2270	chr3L	23665514	23665528	chr3L	23665624	23665636	gypsy8	9	109	20.0	17.5	18.8	0.5	122	chr3L	23665514	intron	AGO3 +	chr3L	23665575	intron	AGO3 +	chr3L	23665636	intron	AGO3 +	chr3L_9_23665001	chr3L_23665001	RAL-377
2272	chr3L	23848824	23848837	chr3L	23849666	23849681	R1A1-element	4	843	6.5	4.5	5.5	0.6	857	chr3L	23848824	intron	CG40470 -	chr3L	23849252	intron	CG40470 -	chr3L	23849681	intron	CG40470 -	chr3L_4_23845001	chr3L_23845001	RAL-377
2276	chr3L	24012395	24012421	chr3L	24020751	24020782	roo	9	8359	8.5	7.0	7.8	1.0	8387	chr3L	24012395	intergenic	not near genes	chr3L	24016588	intergenic	not near genes	chr3L	24020782	intergenic	not near genes	chr3L_9_24015001	chr3L_24015001	RAL-377
2277	chr3L	24021261	24021311	chr3L	24022435	24022487	1360	16	1173	8.0	3.5	5.8	2.4	1226	chr3L	24021261	intergenic	not near genes	chr3L	24021874	intergenic	not near genes	chr3L	24022487	intergenic	not near genes	chr3L_16_24020001	chr3L_24020001	RAL-377
2278	chr3L	24791876	24791915	chr3L	24796675	24796714	Doc	9	4799	6.0	3.5	4.8	1.6	4838	chr3L	24791876	intergenic	not near genes	chr3L	24794295	intergenic	not near genes	chr3L	24796714	intergenic	not near genes	chr3L_9_24790001	chr3L_24790001	RAL-377
2284	chr3L	25628499	25628517	chr3L	25633270	25633308	F-element	4	4786	5.0	3.0	4.0	0.8	4809	chr3L	25628499	intron	CG41343 -	chr3L	25630904	intron	CG41343 -	chr3L	25633308	intron	CG41343 -	chr3L_4_25630001	chr3L_25630001	RAL-377
2288	chr3L	26704510	26704526	chr3L	26709835	26709851	Transpac	4	5325	5.0	1.5	3.2	1.0	5341	chr3L	26704510	intergenic	not near genes	chr3L	26707180	intergenic	not near genes	chr3L	26709851	intergenic	not near genes	chr3L_4_26705001	chr3L_26705001	RAL-377
2291	chr3L	27980680	27980730	chr3L	27985495	27985548	Doc	13	4817	4.0	4.5	4.2	2.5	4868	chr3L	27980680	intron	CG17514 -	chr3L	27983114	intron	CG17514 -	chr3L	27985548	intron	CG17514 -	chr3L_13_27980001	chr3L_27980001	RAL-377
2299	chr3R	1953173	1953183	chr3R	1958538	1958548	Cr1a	5	5365	19.5	25.5	22.5	0.2	5375	chr3R	1953173	intergenic	not near genes	chr3R	1955860	intergenic	not near genes	chr3R	1958548	intergenic	not near genes	chr3R_5_1955001	chr3R_1955001	RAL-377
2300	chr3R	2447008	2447033	chr3R	2449572	2449596	Burdock	4	2560	28.5	10.0	19.2	0.2	2588	chr3R	2447008	intergenic	not near genes	chr3R	2448302	intergenic	not near genes	chr3R	2449596	intergenic	not near genes	chr3R_4_2445001	chr3R_2445001	RAL-377
2305	chr3R	3989294	3989302	chr3R	4068944	4068951	mdg1	4	79649	9.0	19.5	14.2	0.3	79657	chr3R	3989294	intergenic	not near genes	chr3R	4029122	intergenic	not near genes	chr3R	4068951	intergenic	not near genes	chr3R_4_4025001	chr3R_4025001	RAL-377
2306	chr3R	4105023	4105059	chr3R	4110247	4110283	copia	9	5223	4.0	2.5	3.2	2.1	5260	chr3R	4105023	intergenic	not near genes	chr3R	4107653	intergenic	not near genes	chr3R	4110283	intergenic	not near genes	chr3R_9_4105001	chr3R_4105001	RAL-377
2308	chr3R	4206050	4206103	chr3R	4211645	4211698	mdg3	18	5594	5.0	4.5	4.8	3.1	5648	chr3R	4206050	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211698	intron	CG14636 -	chr3R_18_4205001	chr3R_4205001	RAL-377
2310	chr3R	4366739	4366789	chr3R	4375142	4375192	roo	15	8401	7.5	7.0	7.2	1.8	8453	chr3R	4366739	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375192	5` UTR	CR44922 +	chr3R_15_4370001	chr3R_4370001	RAL-377
2311	chr3R	4408393	4408406	chr3R	4412717	4412730	Juan	6	4324	14.0	9.0	11.5	0.5	4337	chr3R	4408393	intron	CG32944 -	chr3R	4410562	intron	CG32944 -	chr3R	4412730	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-377
2312	chr3R	4408410	4408441	chr3R	4412713	4412755	Juan	17	4322	5.0	7.0	6.0	2.4	4345	chr3R	4408410	intron	CG32944 -	chr3R	4410582	intron	CG32944 -	chr3R	4412755	intron	CG32944 -	chr3R_17_4410001	chr3R_4410001	RAL-377
2314	chr3R	4609528	4609572	chr3R	4610712	4610756	1360	15	1183	9.0	8.5	8.8	1.5	1228	chr3R	4609528	intergenic	not near genes	chr3R	4610142	intergenic	not near genes	chr3R	4610756	intergenic	not near genes	chr3R_15_4610001	chr3R_4610001	RAL-377
2318	chr3R	4753220	4753265	chr3R	4757543	4757583	F-element	9	4322	9.0	4.5	6.8	1.2	4363	chr3R	4753220	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757583	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-377
2327	chr3R	5045825	5045864	chr3R	5052947	5052986	HMS-Beagle	9	7122	7.0	3.5	5.2	1.5	7161	chr3R	5045825	3` UTR	CR43635 -	chr3R	5049406	intergenic	not near genes	chr3R	5052986	intergenic	CR45588 -	chr3R_9_5045001	chr3R_5045001	RAL-377
2328	chr3R	5067960	5068012	chr3R	5073497	5073549	mdg3	16	5536	2.5	7.5	5.0	2.7	5589	chr3R	5067960	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073549	intergenic	not near genes	chr3R_16_5070001	chr3R_5070001	RAL-377
2335	chr3R	5338382	5338412	chr3R	5343579	5343608	Rt1c	17	5196	11.5	5.5	8.5	1.8	5226	chr3R	5338382	intron	mtd -	chr3R	5340995	intron	mtd -	chr3R	5343608	intron	mtd -	chr3R_17_5340001	chr3R_5340001	RAL-377
2337	chr3R	5445948	5445988	chr3R	5452428	5452463	Burdock	17	6478	5.0	4.0	4.5	3.1	6515	chr3R	5445948	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452463	intron	CG14669 +	chr3R_17_5445001	chr3R_5445001	RAL-377
2339	chr3R	5745993	5746041	chr3R	5746254	5746302	pogo	18	259	4.0	5.0	4.5	3.3	309	chr3R	5745993	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746302	3` UTR	Madm +	chr3R_18_5745001	chr3R_5745001	RAL-377
2340	chr3R	5746999	5747042	chr3R	5753210	5753253	diver	10	6210	5.0	8.0	6.5	1.3	6254	chr3R	5746999	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753253	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	RAL-377
2342	chr3R	5809107	5809138	chr3R	5809368	5809399	pogo	11	258	2.5	5.5	4.0	2.2	292	chr3R	5809107	3` UTR	CG11000 +	chr3R	5809253	3` UTR	CG11000 +	chr3R	5809399	3` UTR	CG11000 +	chr3R_11_5805001	chr3R_5805001	RAL-377
2343	chr3R	5822365	5822405	chr3R	5823551	5823592	1360	13	1187	4.0	6.0	5.0	2.2	1227	chr3R	5822365	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823592	3` UTR	CG2023 -	chr3R_13_5820001	chr3R_5820001	RAL-377
2347	chr3R	5927546	5927584	chr3R	5927806	5927844	pogo	10	258	4.0	6.0	5.0	1.7	298	chr3R	5927546	intron	CG34113 -	chr3R	5927695	intron	CG34113 -	chr3R	5927844	intron	CG34113 -	chr3R_10_5925001	chr3R_5925001	RAL-377
2351	chr3R	6015947	6015982	chr3R	6024445	6024483	Tirant	6	8497	2.0	2.0	2.0	2.0	8536	chr3R	6015947	intergenic	not near genes	chr3R	6020215	intergenic	not near genes	chr3R	6024483	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	RAL-377
2353	chr3R	6121164	6121183	chr3R	6121402	6121421	BS	6	238	0.0	7.0	3.5	1.3	257	chr3R	6121164	intergenic	not near genes	chr3R	6121292	intergenic	not near genes	chr3R	6121421	intergenic	not near genes	chr3R_6_6120001	chr3R_6120001	RAL-377
2355	chr3R	6158490	6158536	chr3R	6167093	6167132	Tirant	8	8600	8.0	4.0	6.0	1.1	8642	chr3R	6158490	intergenic	not near genes	chr3R	6162811	intergenic	not near genes	chr3R	6167132	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	RAL-377
2356	chr3R	6175151	6175202	chr3R	6182443	6182494	HMS-Beagle2	17	7290	2.5	3.0	2.8	4.5	7343	chr3R	6175151	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182494	intergenic	CR45194 +	chr3R_17_6175001	chr3R_6175001	RAL-377
2360	chr3R	6206269	6206316	chr3R	6206506	6206552	BS	13	234	5.0	7.0	6.0	1.9	283	chr3R	6206269	exon	Osi24 +	chr3R	6206410	intron	Osi24 +	chr3R	6206552	intron	Osi24 +	chr3R_13_6205001	chr3R_6205001	RAL-377
2368	chr3R	6510007	6510010	chr3R	6515108	6515111	jockey	5	5101	11.5	5.5	8.5	0.5	5104	chr3R	6510007	intergenic	not near genes	chr3R	6512559	intergenic	not near genes	chr3R	6515111	intergenic	not near genes	chr3R_5_6510001	chr3R_6510001	RAL-377
2369	chr3R	6510015	6510049	chr3R	6515107	6515149	jockey	8	5100	7.5	5.5	6.5	1.1	5134	chr3R	6510015	intergenic	not near genes	chr3R	6512582	intergenic	not near genes	chr3R	6515149	intergenic	not near genes	chr3R_8_6510001	chr3R_6510001	RAL-377
2372	chr3R	6737504	6737527	chr3R	6739285	6739334	Doc	5	1801	0.0	2.0	1.0	2.5	1830	chr3R	6737504	intron	pb -	chr3R	6738419	intron	pb -	chr3R	6739334	intron	pb -	chr3R_5_6735001	chr3R_6735001	RAL-377
2393	chr3R	7694558	7694610	chr3R	7713639	7713691	invader3	14	19080	4.0	4.0	4.0	2.8	19133	chr3R	7694558	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713691	intergenic	not near genes	chr3R_14_7700001	chr3R_7700001	RAL-377
2394	chr3R	7729446	7729498	chr3R	7737404	7737456	Stalker2	11	7957	2.5	3.5	3.0	2.8	8010	chr3R	7729446	intergenic	not near genes	chr3R	7733451	intergenic	not near genes	chr3R	7737456	intergenic	not near genes	chr3R_11_7730001	chr3R_7730001	RAL-377
2400	chr3R	7973324	7973332	chr3R	7974408	7974416	1360	7	1084	7.5	6.5	7.0	0.9	1092	chr3R	7973324	intergenic	not near genes	chr3R	7973870	intergenic	not near genes	chr3R	7974416	3` UTR	CD98hc -	chr3R_7_7970001	chr3R_7970001	RAL-377
2403	chr3R	8090552	8090568	chr3R	8094043	8094049	297	7	3492	6.5	13.0	9.8	0.6	3497	chr3R	8090552	intergenic	CR44330 +	chr3R	8092300	intergenic	not near genes	chr3R	8094049	intergenic	CG7900 +	chr3R_7_8090001	chr3R_8090001	RAL-377
2404	chr3R	8094390	8094435	chr3R	8099715	8099760	Transpac	13	5325	6.5	6.0	6.2	1.8	5370	chr3R	8094390	intron	CG7900 +	chr3R	8097075	intron	CG7900 +	chr3R	8099760	intron	CG7900 +	chr3R_13_8095001	chr3R_8095001	RAL-377
2405	chr3R	8101753	8101788	chr3R	8104848	8104892	G2	4	3102	1.5	7.0	4.2	0.8	3139	chr3R	8101753	exon	CG7900 +	chr3R	8103322	intron	CG7900 +	chr3R	8104892	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-377
2406	chr3R	8207550	8207585	chr3R	8208405	8208450	F-element	10	859	4.0	2.0	3.0	2.5	900	chr3R	8207550	intergenic	not near genes	chr3R	8208000	intergenic	not near genes	chr3R	8208450	intergenic	not near genes	chr3R_10_8205001	chr3R_8205001	RAL-377
2414	chr3R	8402992	8403036	chr3R	8412178	8412221	roo	12	9183	5.0	4.5	4.8	2.1	9229	chr3R	8402992	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412221	intron	CG45263 -	chr3R_12_8405001	chr3R_8405001	RAL-377
2419	chr3R	8570458	8570508	chr3R	8575114	8575163	HMS-Beagle	5	4651	4.5	4.0	4.2	1.0	4705	chr3R	8570458	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575163	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	RAL-377
2420	chr3R	8601775	8601800	chr3R	8610922	8610973	roo	11	9165	5.5	3.0	4.2	2.1	9198	chr3R	8601775	intron	5-HT2B +	chr3R	8606374	intron	5-HT2B +	chr3R	8610973	intron	5-HT2B +	chr3R_11_8605001	chr3R_8605001	RAL-377
2423	chr3R	8707353	8707384	chr3R	8709814	8709845	jockey	6	2461	3.0	2.5	2.8	1.6	2492	chr3R	8707353	intergenic	not near genes	chr3R	8708599	intergenic	not near genes	chr3R	8709845	intergenic	not near genes	chr3R_6_8705001	chr3R_8705001	RAL-377
2437	chr3R	9278771	9278799	chr3R	9284043	9284056	Rt1a	8	5274	6.0	6.5	6.2	1.1	5285	chr3R	9278771	intergenic	not near genes	chr3R	9281414	intergenic	not near genes	chr3R	9284056	intergenic	not near genes	chr3R_8_9280001	chr3R_9280001	RAL-377
2439	chr3R	9319557	9319603	chr3R	9320012	9320054	jockey	17	455	3.5	8.0	5.8	2.5	497	chr3R	9319557	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320054	intron	CG8861 -	chr3R_17_9315001	chr3R_9315001	RAL-377
2440	chr3R	9361806	9361837	chr3R	9362067	9362091	pogo	10	260	7.0	7.5	7.2	1.2	285	chr3R	9361806	3` UTR	CG45050 +	chr3R	9361948	3` UTR	CG45050 +	chr3R	9362091	3` UTR	CG45050 +	chr3R_10_9360001	chr3R_9360001	RAL-377
2454	chr3R	10231760	10231814	chr3R	10237357	10237411	mdg3	19	5595	8.0	3.5	5.8	2.8	5651	chr3R	10231760	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237411	intron	CG42795 +	chr3R_19_10230001	chr3R_10230001	RAL-377
2455	chr3R	10255364	10255387	chr3R	10260824	10260847	I-element	10	5460	9.0	5.5	7.2	1.2	5483	chr3R	10255364	3` UTR	Sirt6 -	chr3R	10258106	intron	Sirt6 -	chr3R	10260847	exon	Sirt6 -	chr3R_10_10255001	chr3R_10255001	RAL-377
2464	chr3R	10804155	10804201	chr3R	10811707	10811753	17.6	16	7552	5.0	4.0	4.5	2.9	7598	chr3R	10804155	intergenic	CG14692 -	chr3R	10807954	intergenic	not near genes	chr3R	10811753	3` UTR	CG14693 -	chr3R_16_10805001	chr3R_10805001	RAL-377
2471	chr3R	11065586	11065618	chr3R	11071262	11071291	297	5	5669	1.0	3.0	2.0	1.7	5705	chr3R	11065586	intergenic	not near genes	chr3R	11068438	intergenic	not near genes	chr3R	11071291	intergenic	not near genes	chr3R_5_11065001	chr3R_11065001	RAL-377
2474	chr3R	11379219	11379267	chr3R	11388392	11388432	roo	14	9173	5.5	4.0	4.8	2.4	9213	chr3R	11379219	intron	pros +	chr3R	11383826	intron	pros +	chr3R	11388432	intron	pros +	chr3R_14_11380001	chr3R_11380001	RAL-377
2483	chr3R	11841055	11841084	chr3R	11846266	11846295	BS	5	5211	3.5	6.5	5.0	0.8	5240	chr3R	11841055	intron	CG6959 -	chr3R	11843675	intron	CG6959 -	chr3R	11846295	intron	CG6959 -	chr3R_5_11840001	chr3R_11840001	RAL-377
2487	chr3R	12022864	12022912	chr3R	12025061	12025109	pogo	16	2195	3.0	6.5	4.8	2.8	2245	chr3R	12022864	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025109	intergenic	not near genes	chr3R_16_12020001	chr3R_12020001	RAL-377
2508	chr3R	12864536	12864569	chr3R	12865058	12865091	roo	6	522	2.5	3.5	3.0	1.5	555	chr3R	12864536	intergenic	not near genes	chr3R	12864814	intergenic	not near genes	chr3R	12865091	intergenic	not near genes	chr3R_6_12860001	chr3R_12860001	RAL-377
2510	chr3R	12920137	12920181	chr3R	12925360	12925384	copia	9	5218	0.5	7.5	4.0	1.8	5247	chr3R	12920137	intron	beat-Vb +	chr3R	12922760	intron	beat-Vb +	chr3R	12925384	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	RAL-377
2511	chr3R	12920182	12920185	chr3R	12925353	12925358	copia	7	5188	0.5	6.5	3.5	1.6	5176	chr3R	12920182	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925358	intron	beat-Vb +	chr3R_7_12920001	chr3R_12920001	RAL-377
2521	chr3R	13135808	13135859	chr3R	13138003	13138054	pogo	13	2195	6.0	4.5	5.2	2.1	2246	chr3R	13135808	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136931	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138054	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_13_13135001	chr3R_13135001	RAL-377
2522	chr3R	13143011	13143059	chr3R	13148608	13148654	mdg3	10	5592	4.0	3.0	3.5	2.2	5643	chr3R	13143011	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145832	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148654	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_10_13145001	chr3R_13145001	RAL-377
2531	chr3R	13314082	13314109	chr3R	13318890	13318917	Doc	7	4808	7.0	4.5	5.8	1.0	4835	chr3R	13314082	intergenic	not near genes	chr3R	13316500	intergenic	not near genes	chr3R	13318917	intergenic	CG45080 -	chr3R_7_13315001	chr3R_13315001	RAL-377
2539	chr3R	13517230	13517244	chr3R	13520066	13520080	jockey	6	2836	3.0	3.0	3.0	1.5	2850	chr3R	13517230	intergenic	not near genes	chr3R	13518655	intergenic	not near genes	chr3R	13520080	intergenic	not near genes	chr3R_6_13515001	chr3R_13515001	RAL-377
2554	chr3R	14021637	14021660	chr3R	14023469	14023505	S-element	13	1844	7.5	4.0	5.8	1.9	1868	chr3R	14021637	intron	rdx -	chr3R	14022571	intron	rdx -	chr3R	14023505	intron	rdx -	chr3R_13_14020001	chr3R_14020001	RAL-377
2562	chr3R	14180792	14180819	chr3R	14185577	14185598	F-element	11	4784	4.5	0.0	2.2	3.4	4806	chr3R	14180792	intron	Dop1R1 -	chr3R	14183195	intron	Dop1R1 -	chr3R	14185598	intron	Dop1R1 -	chr3R_11_14180001	chr3R_14180001	RAL-377
2566	chr3R	14236919	14236933	chr3R	14244437	14244451	Idefix	5	7518	4.0	2.0	3.0	1.2	7532	chr3R	14236919	exon	CG43291 -	chr3R	14240685	intron	CG43291 -	chr3R	14244451	intron	CG43291 -	chr3R_5_14240001	chr3R_14240001	RAL-377
2567	chr3R	14246405	14246407	chr3R	14247908	14247922	jockey	4	1512	4.5	5.5	5.0	0.7	1517	chr3R	14246405	intergenic	not near genes	chr3R	14247164	intergenic	not near genes	chr3R	14247922	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-377
2585	chr3R	15041409	15041458	chr3R	15045197	15045231	Doc	12	3787	4.0	1.0	2.5	3.4	3822	chr3R	15041409	intergenic	not near genes	chr3R	15043320	intergenic	not near genes	chr3R	15045231	intergenic	not near genes	chr3R_12_15040001	chr3R_15040001	RAL-377
2587	chr3R	15059267	15059277	chr3R	15059498	15059508	BS	5	231	1.5	0.0	0.8	2.8	241	chr3R	15059267	intron	dpr9 -	chr3R	15059388	intron	dpr9 -	chr3R	15059508	intron	dpr9 -	chr3R_5_15055001	chr3R_15055001	RAL-377
2590	chr3R	15079787	15079825	chr3R	15080048	15080086	pogo	11	261	7.0	1.0	4.0	2.2	299	chr3R	15079787	3` UTR	CG6966 -	chr3R	15079936	3` UTR	CG6966 -	chr3R	15080086	3` UTR	CG6966 -	chr3R_11_15075001	chr3R_15075001	RAL-377
2591	chr3R	15102492	15102529	chr3R	15109770	15109802	412	10	7276	2.5	5.0	3.8	2.1	7310	chr3R	15102492	intron	CG42788 -	chr3R	15106147	intron	CG42788 -	chr3R	15109802	intron	CG42788 -	chr3R_10_15105001	chr3R_15105001	RAL-377
2592	chr3R	15132059	15132089	chr3R	15135145	15135175	Juan	6	3085	5.0	3.5	4.2	1.2	3116	chr3R	15132059	intergenic	CG42788 -	chr3R	15133617	intergenic	not near genes	chr3R	15135175	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-377
2604	chr3R	15601148	15601196	chr3R	15608690	15608723	412	20	7539	7.5	6.0	6.8	2.6	7575	chr3R	15601148	intergenic	not near genes	chr3R	15604936	intergenic	not near genes	chr3R	15608723	intergenic	not near genes	chr3R_20_15600001	chr3R_15600001	RAL-377
2605	chr3R	15618732	15618759	chr3R	15626211	15626253	blood	7	7491	2.5	5.0	3.8	1.5	7521	chr3R	15618732	intergenic	not near genes	chr3R	15622492	intergenic	not near genes	chr3R	15626253	intergenic	not near genes	chr3R_7_15620001	chr3R_15620001	RAL-377
2614	chr3R	15735224	15735236	chr3R	15739964	15739976	F-element	8	4740	4.5	5.0	4.8	1.4	4752	chr3R	15735224	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739976	intergenic	not near genes	chr3R_8_15735001	chr3R_15735001	RAL-377
2629	chr3R	16756307	16756343	chr3R	16762517	16762554	diver	5	6209	2.5	1.0	1.8	1.8	6247	chr3R	16756307	intron	bxd -	chr3R	16759430	intron	bxd -	chr3R	16762554	intron	bxd -	chr3R_5_16755001	chr3R_16755001	RAL-377
2634	chr3R	17294653	17294695	chr3R	17295101	17295142	BS	8	446	2.5	4.0	3.2	1.9	489	chr3R	17294653	intergenic	not near genes	chr3R	17294898	intergenic	not near genes	chr3R	17295142	intergenic	not near genes	chr3R_8_17290001	chr3R_17290001	RAL-377
2636	chr3R	17346678	17346715	chr3R	17348261	17348298	F-element	14	1583	8.0	4.0	6.0	2.0	1620	chr3R	17346678	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348298	intron	beat-IIa -	chr3R_14_17345001	chr3R_17345001	RAL-377
2643	chr3R	17591284	17591299	chr3R	17591725	17591754	F-element	6	450	7.5	3.5	5.5	0.9	470	chr3R	17591284	intergenic	not near genes	chr3R	17591519	intergenic	not near genes	chr3R	17591754	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	RAL-377
2654	chr3R	17925840	17925872	chr3R	17927327	17927359	hobo	8	1486	3.0	5.0	4.0	1.6	1519	chr3R	17925840	intron	cpo +	chr3R	17926600	intron	cpo +	chr3R	17927359	intron	cpo +	chr3R_8_17925001	chr3R_17925001	RAL-377
2658	chr3R	18061598	18061615	chr3R	18063186	18063203	F-element	7	1588	0.0	0.0	0.0	7.0	1605	chr3R	18061598	intergenic	not near genes	chr3R	18062400	intergenic	not near genes	chr3R	18063203	intergenic	not near genes	chr3R_7_18060001	chr3R_18060001	RAL-377
2663	chr3R	18331761	18331771	chr3R	18333275	18333285	hopper2	6	1514	14.0	3.0	8.5	0.6	1524	chr3R	18331761	3` UTR	CG15803 -	chr3R	18332523	intron	CG15803 -	chr3R	18333285	3` UTR	CG15803 -	chr3R_6_18330001	chr3R_18330001	RAL-377
2670	chr3R	18606494	18606529	chr3R	18610740	18610781	F-element	17	4251	4.0	7.5	5.8	2.5	4287	chr3R	18606494	intron,intron	qin +,CG14304 -	chr3R	18608638	intron,intron	qin +,CG14304 -	chr3R	18610781	intron,intron	qin +,CG14304 -	chr3R_17_18605001	chr3R_18605001	RAL-377
2710	chr3R	20109515	20109568	chr3R	20114741	20114794	copia	14	5225	3.5	5.5	4.5	2.5	5279	chr3R	20109515	intergenic	not near genes	chr3R	20112154	intergenic	not near genes	chr3R	20114794	intergenic	CG10887 +	chr3R_14_20110001	chr3R_20110001	RAL-377
2713	chr3R	20156677	20156718	chr3R	20165867	20165908	roo	12	9186	2.5	6.5	4.5	2.2	9231	chr3R	20156677	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165908	intergenic	not near genes	chr3R_12_20160001	chr3R_20160001	RAL-377
2715	chr3R	20245269	20245298	chr3R	20248899	20248928	F-element	8	3630	6.0	1.0	3.5	1.8	3659	chr3R	20245269	3` UTR	Nlg4 +	chr3R	20247098	intergenic	not near genes	chr3R	20248928	intergenic	not near genes	chr3R_8_20245001	chr3R_20245001	RAL-377
2718	chr3R	20266501	20266543	chr3R	20272992	20273034	Burdock	19	6491	3.5	5.0	4.2	3.7	6533	chr3R	20266501	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273034	intron	cic +	chr3R_19_20265001	chr3R_20265001	RAL-377
2723	chr3R	20330980	20331027	chr3R	20331486	20331533	roo	14	506	4.0	6.0	5.0	2.3	553	chr3R	20330980	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331533	intergenic	not near genes	chr3R_14_20330001	chr3R_20330001	RAL-377
2727	chr3R	20512986	20513033	chr3R	20515709	20515756	opus	17	2723	9.0	3.5	6.2	2.4	2770	chr3R	20512986	intergenic	not near genes	chr3R	20514371	intergenic	not near genes	chr3R	20515756	intergenic	not near genes	chr3R_17_20510001	chr3R_20510001	RAL-377
2741	chr3R	20854478	20854517	chr3R	20859279	20859321	Doc	9	4803	7.0	5.0	6.0	1.3	4843	chr3R	20854478	intron	Ir93a -	chr3R	20856900	intron	Ir93a -	chr3R	20859321	exon	Ir93a -	chr3R_9_20855001	chr3R_20855001	RAL-377
2750	chr3R	21141665	21141701	chr3R	21150166	21150182	Tirant	4	8484	4.0	1.5	2.8	1.1	8517	chr3R	21141665	intron	SNF4Agamma +	chr3R	21145924	intron	SNF4Agamma +	chr3R	21150182	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-377
2769	chr3R	21761109	21761146	chr3R	21768511	21768522	mdg1	7	7402	7.5	4.0	5.8	1.0	7413	chr3R	21761109	exon	CG42335 +	chr3R	21764816	intron	CG42335 +	chr3R	21768522	exon	CG42335 +	chr3R_7_21760001	chr3R_21760001	RAL-377
2785	chr3R	22234687	22234703	chr3R	22236010	22236042	pogo	5	1334	6.5	5.5	6.0	0.7	1355	chr3R	22234687	intron	SKIP +	chr3R	22235364	intron	SKIP +	chr3R	22236042	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-377
2786	chr3R	22234704	22234712	chr3R	22236009	22236050	pogo	6	1333	5.5	5.5	5.5	0.9	1346	chr3R	22234704	intron	SKIP +	chr3R	22235377	intron	SKIP +	chr3R	22236050	intron	SKIP +	chr3R_6_22235001	chr3R_22235001	RAL-377
2787	chr3R	22239475	22239522	chr3R	22248555	22248602	roo	14	9080	3.5	4.5	4.0	2.8	9127	chr3R	22239475	intron	SKIP +	chr3R	22244038	intron	SKIP +	chr3R	22248602	intron	SKIP +	chr3R_14_22240001	chr3R_22240001	RAL-377
2792	chr3R	22450524	22450571	chr3R	22453183	22453218	NOF	15	2655	3.0	3.0	3.0	3.8	2694	chr3R	22450524	intron	CG34376 +	chr3R	22451871	intron	CG34376 +	chr3R	22453218	intron	CG34376 +	chr3R_15_22450001	chr3R_22450001	RAL-377
2802	chr3R	22881185	22881200	chr3R	22884911	22884926	Doc	4	3726	6.5	5.5	6.0	0.6	3741	chr3R	22881185	intergenic	not near genes	chr3R	22883056	intergenic	not near genes	chr3R	22884926	intergenic	not near genes	chr3R_4_22880001	chr3R_22880001	RAL-377
2815	chr3R	23558379	23558429	chr3R	23560180	23560214	Bari1	15	1800	0.5	3.5	2.0	5.0	1835	chr3R	23558379	intron	beat-IV +	chr3R	23559296	intron	beat-IV +	chr3R	23560214	intron	beat-IV +	chr3R_15_23555001	chr3R_23555001	RAL-377
2819	chr3R	23684674	23684720	chr3R	23685180	23685193	roo	7	499	1.5	3.0	2.2	2.2	519	chr3R	23684674	exon	CG18754 +	chr3R	23684934	intron	CG18754 +	chr3R	23685193	exon	CG18754 +	chr3R_7_23680001	chr3R_23680001	RAL-377
2822	chr3R	23835399	23835432	chr3R	23844556	23844602	roo	12	9168	6.0	4.0	5.0	2.0	9203	chr3R	23835399	intron	CG34355 +	chr3R	23840000	intron	CG34355 +	chr3R	23844602	intron	CG34355 +	chr3R_12_23835001	chr3R_23835001	RAL-377
2823	chr3R	23851068	23851085	chr3R	23858755	23858772	opus	11	7687	10.5	12.5	11.5	0.9	7704	chr3R	23851068	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858772	intergenic	not near genes	chr3R_11_23850001	chr3R_23850001	RAL-377
2828	chr3R	24072078	24072116	chr3R	24072524	24072558	jockey	8	450	4.0	7.5	5.8	1.2	480	chr3R	24072078	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072558	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	RAL-377
2829	chr3R	24076902	24076947	chr3R	24078389	24078434	hobo	14	1484	3.5	8.0	5.8	2.1	1532	chr3R	24076902	intron	4EHP -	chr3R	24077668	intron	4EHP -	chr3R	24078434	intron	4EHP -	chr3R_14_24075001	chr3R_24075001	RAL-377
2831	chr3R	24207201	24207245	chr3R	24212297	24212341	flea	15	5095	3.5	7.5	5.5	2.3	5140	chr3R	24207201	intron	twin -	chr3R	24209771	intron	twin -	chr3R	24212341	intron	twin -	chr3R_15_24205001	chr3R_24205001	RAL-377
2835	chr3R	24493260	24493306	chr3R	24493509	24493555	BS	15	248	6.0	5.0	5.5	2.3	295	chr3R	24493260	intergenic	not near genes	chr3R	24493408	intergenic	not near genes	chr3R	24493555	intergenic	not near genes	chr3R_15_24490001	chr3R_24490001	RAL-377
2837	chr3R	24594657	24594668	chr3R	24594917	24594928	pogo	4	260	3.5	2.5	3.0	1.0	271	chr3R	24594657	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594928	intron	mld +	chr3R_4_24590001	chr3R_24590001	RAL-377
2843	chr3R	24730076	24730101	chr3R	24732473	24732498	Doc	4	2398	2.5	0.0	1.2	1.8	2422	chr3R	24730076	intron	tok +	chr3R	24731287	intron	tok +	chr3R	24732498	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-377
2847	chr3R	24927119	24927145	chr3R	24931919	24931954	Doc	11	4810	6.5	4.0	5.2	1.8	4835	chr3R	24927119	intergenic	Trf4-2 +	chr3R	24929536	intergenic	not near genes	chr3R	24931954	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	RAL-377
2859	chr3R	25725813	25725859	chr3R	25734988	25735039	roo	12	9180	6.0	3.5	4.8	2.1	9226	chr3R	25725813	intron	LpR2 -	chr3R	25730426	intron	LpR2 -	chr3R	25735039	intron	LpR2 -	chr3R_12_25730001	chr3R_25730001	RAL-377
2863	chr3R	25832675	25832724	chr3R	25841877	25841926	roo	9	9199	3.0	6.0	4.5	1.6	9251	chr3R	25832675	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841926	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-377
2876	chr3R	26215771	26215795	chr3R	26221745	26221759	297	4	5972	3.0	3.5	3.2	1.0	5988	chr3R	26215771	intergenic	not near genes	chr3R	26218765	intergenic	not near genes	chr3R	26221759	intergenic	not near genes	chr3R_4_26215001	chr3R_26215001	RAL-377
2884	chr3R	26376307	26376356	chr3R	26385486	26385527	roo	7	9175	5.5	0.0	2.8	1.8	9220	chr3R	26376307	intergenic	not near genes	chr3R	26380917	intergenic	not near genes	chr3R	26385527	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-377
2887	chr3R	26510482	26510531	chr3R	26519563	26519612	roo	12	9081	4.0	4.0	4.0	2.4	9130	chr3R	26510482	intron	plum -	chr3R	26515047	intron	plum -	chr3R	26519612	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	RAL-377
2890	chr3R	26558314	26558352	chr3R	26565647	26565684	Stalker4	6	7328	3.5	4.5	4.0	1.2	7370	chr3R	26558314	intron	scrib +	chr3R	26561999	intron	scrib +	chr3R	26565684	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-377
2891	chr3R	26642718	26642737	chr3R	26643131	26643140	jockey	5	411	7.5	8.0	7.8	0.6	422	chr3R	26642718	intergenic	not near genes	chr3R	26642929	intergenic	not near genes	chr3R	26643140	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-377
2892	chr3R	26642741	26642758	chr3R	26643126	26643161	jockey	10	409	5.0	6.5	5.8	1.5	420	chr3R	26642741	intergenic	not near genes	chr3R	26642951	intergenic	not near genes	chr3R	26643161	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	RAL-377
2895	chr3R	26810535	26810580	chr3R	26811040	26811085	roo	9	504	8.0	5.0	6.5	1.2	550	chr3R	26810535	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811085	intron	Tl +	chr3R_9_26810001	chr3R_26810001	RAL-377
2903	chr3R	27007387	27007435	chr3R	27016542	27016590	roo	15	9155	4.0	4.0	4.0	3.0	9203	chr3R	27007387	intron	RYa-R +	chr3R	27011988	intron	RYa-R +	chr3R	27016590	intron	RYa-R +	chr3R_15_27010001	chr3R_27010001	RAL-377
2907	chr3R	27140498	27140548	chr3R	27148123	27148176	412	17	7629	6.5	5.5	6.0	2.4	7678	chr3R	27140498	intron	CG6051 -	chr3R	27144337	intron	CG6051 -	chr3R	27148176	intron	CG6051 -	chr3R_17_27140001	chr3R_27140001	RAL-377
2910	chr3R	27342776	27342826	chr3R	27351377	27351427	Tirant	13	8601	4.5	3.0	3.8	2.7	8651	chr3R	27342776	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351427	intron	CG42534 +	chr3R_13_27345001	chr3R_27345001	RAL-377
2914	chr3R	27521142	27521184	chr3R	27530371	27530413	roo	20	9229	6.0	5.5	5.8	2.9	9271	chr3R	27521142	intron	CG12885 +	chr3R	27525778	intron	CG12885 +	chr3R	27530413	intron	CG12885 +	chr3R_20_27525001	chr3R_27525001	RAL-377
2918	chr3R	27636127	27636128	chr3R	28507584	28507585	I-element	4	871457	2.0	5.0	3.5	0.9	871458	chr3R	27636127	intergenic	CG5611 -,Mtl +	chr3R	28071856	intron	CG34362 +	chr3R	28507585	intron	Dhc98D +	chr3R_4_28070001	chr3R_28070001	RAL-377
2921	chr3R	27725581	27725598	chr3R	27731044	27731061	I-element	7	5463	0.0	11.5	5.8	1.0	5480	chr3R	27725581	intergenic	not near genes	chr3R	27728321	intergenic	not near genes	chr3R	27731061	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-377
2925	chr3R	27856742	27856789	chr3R	27858244	27858292	hopper2	16	1501	4.5	2.0	3.2	3.8	1550	chr3R	27856742	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858292	intron	CG34353 -	chr3R_16_27855001	chr3R_27855001	RAL-377
2926	chr3R	27862933	27862985	chr3R	27868258	27868310	Transpac	11	5320	2.0	4.0	3.0	2.8	5377	chr3R	27862933	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868310	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	RAL-377
2928	chr3R	27875690	27875729	chr3R	27882761	27882804	297	20	7075	3.0	5.5	4.2	3.8	7114	chr3R	27875690	intron	CG34353 -	chr3R	27879247	intron	CG34353 -	chr3R	27882804	intron	CG34353 -	chr3R_20_27875001	chr3R_27875001	RAL-377
2929	chr3R	28068474	28068527	chr3R	28073936	28073986	I-element	18	5461	0.0	2.5	1.2	8.2	5512	chr3R	28068474	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073986	intron	CG34362 +	chr3R_18_28070001	chr3R_28070001	RAL-377
2933	chr3R	28173651	28173704	chr3R	28181101	28181154	mdg1	13	7450	0.5	5.5	3.0	3.2	7503	chr3R	28173651	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181154	intron	CG34354 +	chr3R_13_28175001	chr3R_28175001	RAL-377
2936	chr3R	28253334	28253362	chr3R	28255847	28255892	jockey	9	2525	2.0	2.5	2.2	2.8	2558	chr3R	28253334	intergenic	not near genes	chr3R	28254613	intergenic	not near genes	chr3R	28255892	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	RAL-377
2937	chr3R	28302089	28302126	chr3R	28302548	28302585	jockey	14	459	10.0	8.0	9.0	1.4	496	chr3R	28302089	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302585	intergenic	not near genes	chr3R_14_28300001	chr3R_28300001	RAL-377
2946	chr3R	28758266	28758282	chr3R	28763903	28763919	roo	7	5637	10.0	0.0	5.0	1.2	5653	chr3R	28758266	intergenic	aqrs -	chr3R	28761092	intergenic	not near genes	chr3R	28763919	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-377
2947	chr3R	28758305	28758319	chr3R	28771332	28771346	Stalker4	5	13027	3.0	3.5	3.2	1.2	13041	chr3R	28758305	intergenic	aqrs -	chr3R	28764826	intergenic	not near genes	chr3R	28771346	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	RAL-377
2948	chr3R	28763902	28763914	chr3R	28771359	28771377	Stalker4	5	7462	0.0	7.5	3.8	1.0	7475	chr3R	28763902	intergenic	not near genes	chr3R	28767640	intergenic	not near genes	chr3R	28771377	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-377
2957	chr3R	29079379	29079387	chr3R	29080771	29080779	NOF	4	1392	5.0	0.5	2.8	1.1	1400	chr3R	29079379	intron	CG11873 +	chr3R	29080079	intron	CG11873 +	chr3R	29080779	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-377
2963	chr3R	29319808	29319853	chr3R	29320147	29320187	jockey	20	338	7.5	5.5	6.5	2.7	379	chr3R	29319808	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320187	intergenic	not near genes	chr3R_20_29315001	chr3R_29315001	RAL-377
2968	chr3R	29406614	29406642	chr3R	29407920	29407943	jockey	5	1305	4.5	4.5	4.5	0.9	1329	chr3R	29406614	intron	Ptp99A +	chr3R	29407278	intron	Ptp99A +	chr3R	29407943	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-377
2982	chr3R	29738247	29738292	chr3R	29739733	29739779	hobo	15	1487	6.0	6.5	6.2	2.1	1532	chr3R	29738247	intergenic	CG1969 +,CG7598 +	chr3R	29739013	intron	CG1969 +	chr3R	29739779	5` UTR	CG1969 +	chr3R_15_29735001	chr3R_29735001	RAL-377
2984	chr3R	29882001	29882047	chr3R	29891178	29891224	roo	19	9176	4.0	4.5	4.2	3.7	9223	chr3R	29882001	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891224	intron	CG31038 +	chr3R_19_29885001	chr3R_29885001	RAL-377
2992	chr3R	30084837	30084873	chr3R	30086324	30086360	hobo	9	1482	4.5	4.0	4.2	1.7	1523	chr3R	30084837	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086360	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-377
2996	chr3R	30238741	30238784	chr3R	30239925	30239969	1360	13	1184	2.5	0.0	1.2	5.9	1228	chr3R	30238741	intergenic	not near genes	chr3R	30239355	intergenic	not near genes	chr3R	30239969	intergenic	not near genes	chr3R_13_30235001	chr3R_30235001	RAL-377
3000	chr3R	30317335	30317358	chr3R	30324944	30324970	roo	4	7608	0.0	4.5	2.2	1.2	7635	chr3R	30317335	intron	hdc +	chr3R	30321152	intron	hdc +	chr3R	30324970	intron	hdc +	chr3R_4_30320001	chr3R_30320001	RAL-377
3001	chr3R	30375519	30375562	chr3R	30383164	30383207	412	9	7642	6.0	4.5	5.2	1.5	7688	chr3R	30375519	intergenic	not near genes	chr3R	30379363	intergenic	not near genes	chr3R	30383207	intergenic	not near genes	chr3R_9_30375001	chr3R_30375001	RAL-377
3002	chr3R	30396196	30396240	chr3R	30404482	30404526	roo	12	8283	4.0	4.5	4.2	2.3	8330	chr3R	30396196	intergenic	not near genes	chr3R	30400361	intergenic	not near genes	chr3R	30404526	5` UTR	CR45570 +	chr3R_12_30400001	chr3R_30400001	RAL-377
3006	chr3R	30679497	30679552	chr3R	30686986	30687041	blood	10	7487	3.5	2.0	2.8	2.6	7544	chr3R	30679497	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687041	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	RAL-377
3010	chr3R	30818793	30818838	chr3R	30820378	30820423	1360	19	1584	9.0	8.5	8.8	1.9	1630	chr3R	30818793	intron	cindr +	chr3R	30819608	intron	cindr +	chr3R	30820423	intron	cindr +	chr3R_19_30815001	chr3R_30815001	RAL-377
3016	chr3R	31074224	31074261	chr3R	31081830	31081879	springer	16	7616	3.0	3.5	3.2	3.8	7655	chr3R	31074224	intron	Sox100B +	chr3R	31078052	intron	Sox100B +	chr3R	31081879	intron	Sox100B +	chr3R_16_31075001	chr3R_31075001	RAL-377
3018	chr3R	31279365	31279408	chr3R	31285564	31285619	diver	10	6206	4.5	3.5	4.0	2.0	6254	chr3R	31279365	intergenic	not near genes	chr3R	31282492	intergenic	not near genes	chr3R	31285619	intergenic	not near genes	chr3R_10_31280001	chr3R_31280001	RAL-377
3019	chr3R	31413073	31413122	chr3R	31418293	31418319	copia	15	5214	2.0	3.0	2.5	4.3	5246	chr3R	31413073	intron	Gprk2 +	chr3R	31415696	intron	Gprk2 +	chr3R	31418319	intron	Gprk2 +	chr3R_15_31415001	chr3R_31415001	RAL-377
3028	chr3R	31691519	31691559	chr3R	31696305	31696345	Doc	10	4785	3.0	4.0	3.5	2.2	4826	chr3R	31691519	intergenic	not near genes	chr3R	31693932	intergenic	not near genes	chr3R	31696345	intergenic	not near genes	chr3R_10_31690001	chr3R_31690001	RAL-377
3035	chr3R	31997975	31998020	chr3R	32005460	32005507	blood	11	7489	4.0	4.0	4.0	2.2	7532	chr3R	31997975	intron	heph -	chr3R	32001741	intron	heph -	chr3R	32005507	intron	heph -	chr3R_11_32000001	chr3R_32000001	RAL-377
3037	chr4	76477	76509	chr4	81940	81972	I-element	9	5459	9.5	3.0	6.2	1.2	5495	chr4	76477	intron	pan +	chr4	79224	intron	pan +	chr4	81972	intron	pan +	chr4_9_75001	chr4_75001	RAL-377
3042	chr4	319971	320019	chr4	328167	328215	Stalker2	15	8196	6.0	4.5	5.2	2.4	8244	chr4	319971	3` UTR	CG32850 +	chr4	324093	intron	CG32850 +	chr4	328215	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_15_320001	chr4_320001	RAL-377
3047	chr4	671586	671629	chr4	680189	680232	Tirant	13	8600	7.5	5.5	6.5	1.7	8646	chr4	671586	intron	CG11360 +	chr4	675909	intron	CG11360 +	chr4	680232	intron	CG11360 +	chr4_13_675001	chr4_675001	RAL-377
3052	chrX	295840	295879	chrX	303480	303519	412	10	7639	4.5	5.0	4.8	1.7	7679	chrX	295840	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303519	intron	CG3777 +	chrX_10_295001	chrX_295001	RAL-377
3053	chrX	318454	318494	chrX	323560	323600	flea	14	5104	4.5	6.5	5.5	2.2	5146	chrX	318454	intron,intron	CG3777 +,CG32816 -	chrX	321027	intron,intron	CG3777 +,CG32816 -	chrX	323600	intron,intron	CG3777 +,CG32816 -	chrX_14_320001	chrX_320001	RAL-377
3055	chrX	428401	428450	chrX	434606	434655	3S18	26	6205	3.5	4.0	3.8	5.4	6254	chrX	428401	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434655	intron	CG32816 -	chrX_26_430001	chrX_430001	RAL-377
3059	chrX	551418	551427	chrX	559000	559009	412	4	7581	2.0	1.5	1.8	1.4	7591	chrX	551418	intron	Appl +	chrX	555214	intron	Appl +	chrX	559009	intron	Appl +	chrX_4_555001	chrX_555001	RAL-377
3061	chrX	812248	812286	chrX	817901	817928	297	7	5650	3.5	5.0	4.2	1.3	5680	chrX	812248	intron	CG43867 -	chrX	815088	intron	CG43867 -	chrX	817928	intron	CG43867 -	chrX_7_815001	chrX_815001	RAL-377
3062	chrX	827586	827631	chrX	835396	835443	roo	11	7810	2.5	5.0	3.8	2.3	7857	chrX	827586	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835443	intron	CG43867 -	chrX_11_830001	chrX_830001	RAL-377
3063	chrX	906682	906732	chrX	908491	908539	S-element	11	1808	4.0	17.0	10.5	1.0	1857	chrX	906682	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908539	intron	CG43867 -	chrX_11_905001	chrX_905001	RAL-377
3068	chrX	1357760	1357799	chrX	1367950	1367989	Doc	14	10190	3.5	4.5	4.0	2.8	10229	chrX	1357760	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367989	intergenic	not near genes	chrX_14_1360001	chrX_1360001	RAL-377
3070	chrX	1518020	1518073	chrX	1523442	1523475	jockey	12	5417	1.5	3.5	2.5	3.4	5455	chrX	1518020	intergenic	inc +	chrX	1520748	intergenic	not near genes	chrX	1523475	intergenic	not near genes	chrX_12_1520001	chrX_1520001	RAL-377
3072	chrX	1930530	1930570	chrX	1938121	1938161	opus	19	7591	2.5	5.5	4.0	3.8	7631	chrX	1930530	intergenic	CG11596 +	chrX	1934346	intergenic	not near genes	chrX	1938161	3` UTR	CG3857 -	chrX_19_1930001	chrX_1930001	RAL-377
3073	chrX	1954889	1954917	chrX	1962824	1962874	Stalker2	6	7940	1.0	1.5	1.2	2.7	7985	chrX	1954889	intron	Hr4 +	chrX	1958882	intron	Hr4 +	chrX	1962874	intron	Hr4 +	chrX_6_1955001	chrX_1955001	RAL-377
3076	chrX	2399822	2399865	chrX	2408188	2408219	roo	10	8364	5.5	4.5	5.0	1.7	8397	chrX	2399822	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408219	intergenic	not near genes	chrX_10_2400001	chrX_2400001	RAL-377
3083	chrX	2844882	2844924	chrX	2852312	2852354	mdg1	13	7429	4.5	5.5	5.0	2.2	7472	chrX	2844882	intron	kirre +	chrX	2848618	intron	kirre +	chrX	2852354	intron	kirre +	chrX_13_2845001	chrX_2845001	RAL-377
3087	chrX	3058003	3058048	chrX	3058263	3058309	pogo	11	261	3.5	3.0	3.2	2.6	306	chrX	3058003	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058309	intron	kirre +	chrX_11_3055001	chrX_3055001	RAL-377
3094	chrX	3415015	3415050	chrX	3421220	3421253	3S18	6	6203	0.0	7.0	3.5	1.3	6238	chrX	3415015	intron,intron	CR44999 +,CG12535 -	chrX	3418134	intron,intron	CR44999 +,CG12535 -	chrX	3421253	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-377
3095	chrX	3493074	3493092	chrX	3502253	3502271	roo	5	9179	5.5	2.5	4.0	1.0	9197	chrX	3493074	intron,intron	CR44999 +,Gas8 -	chrX	3497672	intron,intron	CR44999 +,Gas8 -	chrX	3502271	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	RAL-377
3096	chrX	3597536	3597578	chrX	3619724	3619766	roo	15	22188	2.0	2.0	2.0	5.0	22230	chrX	3597536	intron	AstA-R1 +	chrX	3608651	intron	AstA-R1 +	chrX	3619766	intron	AstA-R1 +	chrX_15_3605001	chrX_3605001	RAL-377
3101	chrX	3726749	3726795	chrX	3730166	3730202	NOF	12	3415	3.0	4.0	3.5	2.7	3453	chrX	3726749	intron	tlk +	chrX	3728476	intron	tlk +	chrX	3730202	intron	tlk +	chrX_12_3725001	chrX_3725001	RAL-377
3102	chrX	3752390	3752402	chrX	3764759	3764770	17.6	4	12369	14.5	6.0	10.2	0.4	12380	chrX	3752390	intron	tlk +	chrX	3758580	intron	tlk +	chrX	3764770	intron	tlk +	chrX_4_3755001	chrX_3755001	RAL-377
3103	chrX	3842331	3842347	chrX	3842569	3842585	pogo	6	238	3.5	3.0	3.2	1.4	254	chrX	3842331	intron	ec +	chrX	3842458	intron	ec +	chrX	3842585	intron	ec +	chrX_6_3840001	chrX_3840001	RAL-377
3107	chrX	3986851	3986895	chrX	3994504	3994548	412	12	7652	3.0	4.0	3.5	2.7	7697	chrX	3986851	intergenic	not near genes	chrX	3990700	intergenic	not near genes	chrX	3994548	intergenic	not near genes	chrX_12_3990001	chrX_3990001	RAL-377
3112	chrX	4157877	4157879	chrX	4164950	4164951	297	5	7073	3.5	2.0	2.8	1.3	7074	chrX	4157877	intron	Fas2 -	chrX	4161414	intron	Fas2 -	chrX	4164951	intron	Fas2 -	chrX_5_4160001	chrX_4160001	RAL-377
3121	chrX	4700371	4700426	chrX	4700734	4700789	jockey	8	361	5.0	4.5	4.8	1.4	418	chrX	4700371	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700789	3` UTR	ctp +	chrX_8_4700001	chrX_4700001	RAL-377
3125	chrX	4763243	4763279	chrX	4763751	4763787	Stalker4	8	508	3.5	2.5	3.0	2.0	544	chrX	4763243	intergenic	not near genes	chrX	4763515	intergenic	not near genes	chrX	4763787	intergenic	not near genes	chrX_8_4760001	chrX_4760001	RAL-377
3126	chrX	4792358	4792404	chrX	4792811	4792836	jockey	6	447	3.0	3.0	3.0	1.5	478	chrX	4792358	intergenic	not near genes	chrX	4792597	intergenic	not near genes	chrX	4792836	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-377
3129	chrX	4827993	4827998	chrX	4835357	4835389	Stalker4	7	7383	2.0	6.5	4.2	1.3	7396	chrX	4827993	intergenic	not near genes	chrX	4831691	intergenic	not near genes	chrX	4835389	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-377
3132	chrX	4990025	4990070	chrX	4997257	4997304	roo	15	7232	5.0	2.5	3.8	3.1	7279	chrX	4990025	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997304	intron	CR44833 -	chrX_15_4990001	chrX_4990001	RAL-377
3133	chrX	5096262	5096305	chrX	5103847	5103890	springer	8	7582	1.0	5.0	3.0	2.0	7628	chrX	5096262	intron,intron	CG15465 +,rg +	chrX	5100076	intron,intron	CG15465 +,rg +	chrX	5103890	intron,intron	CG15465 +,rg +	chrX_8_5100001	chrX_5100001	RAL-377
3142	chrX	5524827	5524853	chrX	5528706	5528731	412	4	3881	3.0	1.5	2.2	1.2	3904	chrX	5524827	intergenic	snoRNA:Psi28S-3342 -	chrX	5526779	intergenic	not near genes	chrX	5528731	intergenic	Vsx2 -	chrX_4_5525001	chrX_5525001	RAL-377
3144	chrX	5883792	5883841	chrX	5884053	5884102	pogo	9	259	5.5	3.5	4.5	1.6	310	chrX	5883792	intron	CR45668 -	chrX	5883947	intron	CR45668 -	chrX	5884102	intron	CR45668 -	chrX_9_5880001	chrX_5880001	RAL-377
3145	chrX	5884155	5884188	chrX	5884416	5884449	pogo	6	261	3.5	6.0	4.8	1.0	294	chrX	5884155	intron	CR45668 -	chrX	5884302	intron	CR45668 -	chrX	5884449	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RAL-377
3149	chrX	6171568	6171610	chrX	6179018	6179063	Quasimodo	14	7451	6.0	3.0	4.5	2.5	7495	chrX	6171568	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179063	intron	Ca-alpha1T -	chrX_14_6175001	chrX_6175001	RAL-377
3152	chrX	6335224	6335237	chrX	6337754	6337767	Tirant	6	2530	0.0	8.5	4.2	1.2	2543	chrX	6335224	intergenic	not near genes	chrX	6336496	intergenic	not near genes	chrX	6337767	5` UTR	CG3842 +	chrX_6_6335001	chrX_6335001	RAL-377
3153	chrX	6392874	6392896	chrX	6397659	6397681	Doc	10	4784	4.0	6.0	5.0	1.7	4807	chrX	6392874	intergenic	not near genes	chrX	6395278	intergenic	not near genes	chrX	6397681	intergenic	not near genes	chrX_10_6395001	chrX_6395001	RAL-377
3154	chrX	6445323	6445330	chrX	6451101	6451108	297	5	5778	4.5	6.5	5.5	0.8	5785	chrX	6445323	intron	CG42340 -	chrX	6448216	intron	CG42340 -	chrX	6451108	intron	CG42340 -	chrX_5_6445001	chrX_6445001	RAL-377
3155	chrX	6562796	6562847	chrX	6571298	6571349	Tirant	11	8499	2.5	3.0	2.8	2.9	8553	chrX	6562796	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571349	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-377
3157	chrX	6605462	6605506	chrX	6608504	6608548	Burdock	14	3042	4.5	6.0	5.2	2.3	3086	chrX	6605462	intron	pigs +	chrX	6607005	intron	pigs +	chrX	6608548	intron	pigs +	chrX_14_6605001	chrX_6605001	RAL-377
3164	chrX	7023585	7023628	chrX	7030992	7031022	Tabor	10	7408	3.5	2.5	3.0	2.5	7437	chrX	7023585	intron	CG12541 -	chrX	7027304	intron	CG12541 -	chrX	7031022	intron	CG12541 -	chrX_10_7025001	chrX_7025001	RAL-377
3167	chrX	7125226	7125263	chrX	7134405	7134442	roo	8	9179	0.5	3.0	1.8	2.9	9216	chrX	7125226	intergenic	not near genes	chrX	7129834	intergenic	not near genes	chrX	7134442	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-377
3171	chrX	7702890	7702927	chrX	7703349	7703386	jockey	16	458	6.0	5.5	5.8	2.4	496	chrX	7702890	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703386	intron	CHES-1-like -	chrX_16_7700001	chrX_7700001	RAL-377
3177	chrX	7845707	7845756	chrX	7847214	7847267	hopper2	12	1510	3.0	5.5	4.2	2.3	1560	chrX	7845707	intergenic	not near genes	chrX	7846487	intergenic	not near genes	chrX	7847267	intergenic	not near genes	chrX_12_7845001	chrX_7845001	RAL-377
3179	chrX	8031406	8031450	chrX	8035735	8035779	Juan	7	4329	5.5	1.0	3.2	1.7	4373	chrX	8031406	intergenic	not near genes	chrX	8033592	intergenic	not near genes	chrX	8035779	3` UTR	CG2233 -	chrX_7_8030001	chrX_8030001	RAL-377
3181	chrX	8364834	8364875	chrX	8365251	8365292	BS	15	417	3.0	5.0	4.0	3.0	458	chrX	8364834	intron	nAChRalpha3 -	chrX	8365063	intron	nAChRalpha3 -	chrX	8365292	intron	nAChRalpha3 -	chrX_15_8365001	chrX_8365001	RAL-377
3189	chrX	8922316	8922359	chrX	8922761	8922773	jockey	12	438	1.0	2.5	1.8	4.3	457	chrX	8922316	intron	rdgA +	chrX	8922544	intron	rdgA +	chrX	8922773	intron	rdgA +	chrX_12_8920001	chrX_8920001	RAL-377
3190	chrX	8948742	8948792	chrX	8956272	8956322	roo	8	7528	1.0	6.0	3.5	1.8	7580	chrX	8948742	intron	rdgA +	chrX	8952532	intron	rdgA +	chrX	8956322	intron	rdgA +	chrX_8_8950001	chrX_8950001	RAL-377
3195	chrX	9508121	9508160	chrX	9509657	9509698	jockey	14	1535	3.5	1.0	2.2	4.4	1577	chrX	9508121	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509698	intron	CG32700 -	chrX_14_9505001	chrX_9505001	RAL-377
3197	chrX	9575769	9575820	chrX	9576113	9576164	mdg3	9	342	4.5	4.5	4.5	1.6	395	chrX	9575769	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576164	intron,5` UTR	CG32699 -,CG42395 -	chrX_9_9575001	chrX_9575001	RAL-377
3202	chrX	10138200	10138248	chrX	10145724	10145772	412	6	7524	3.5	0.0	1.8	2.1	7572	chrX	10138200	intron,intron	RhoU +,CR44894 -	chrX	10141986	intron,intron	RhoU +,CR44894 -	chrX	10145772	intron,intron	RhoU +,CR44894 -	chrX_6_10140001	chrX_10140001	RAL-377
3205	chrX	10267296	10267334	chrX	10276466	10276504	roo	11	9170	0.0	5.5	2.8	2.9	9208	chrX	10267296	3` UTR	alpha-Man-I -	chrX	10271900	intron	alpha-Man-I -	chrX	10276504	3` UTR	alpha-Man-I -	chrX_11_10270001	chrX_10270001	RAL-377
3208	chrX	10348780	10348815	chrX	10356365	10356400	springer	11	7584	5.0	2.0	3.5	2.4	7620	chrX	10348780	intergenic	snoRNA:U3:9B +	chrX	10352590	intergenic	not near genes	chrX	10356400	intergenic	l(1)G0289 -	chrX_11_10350001	chrX_10350001	RAL-377
3212	chrX	10525048	10525066	chrX	10532137	10532155	297	5	7085	7.0	5.0	6.0	0.7	7107	chrX	10525048	intron	spri -	chrX	10528602	intron	spri -	chrX	10532155	intron	spri -	chrX_5_10525001	chrX_10525001	RAL-377
3214	chrX	10550856	10550879	chrX	10552317	10552364	hobo	7	1482	2.0	1.0	1.5	2.8	1508	chrX	10550856	intron	spri -	chrX	10551610	intron	spri -	chrX	10552364	intron	spri -	chrX_7_10550001	chrX_10550001	RAL-377
3217	chrX	10686029	10686078	chrX	10691186	10691235	roo	9	5157	4.5	4.5	4.5	1.6	5206	chrX	10686029	intron	X11Lbeta +	chrX	10688632	intron	X11Lbeta +	chrX	10691235	intron	X11Lbeta +	chrX_9_10685001	chrX_10685001	RAL-377
3222	chrX	11095980	11096023	chrX	11103102	11103145	HMS-Beagle	11	7122	5.0	7.5	6.2	1.5	7165	chrX	11095980	intergenic	not near genes	chrX	11099562	intergenic	not near genes	chrX	11103145	intron	CG42249 +	chrX_11_11095001	chrX_11095001	RAL-377
3225	chrX	11184228	11184280	chrX	11189327	11189376	flea	8	5097	2.0	3.5	2.8	2.1	5148	chrX	11184228	intergenic	not near genes	chrX	11186802	intergenic	not near genes	chrX	11189376	intergenic	not near genes	chrX_8_11185001	chrX_11185001	RAL-377
3227	chrX	11312053	11312080	chrX	11319426	11319453	Stalker2	4	7373	1.5	2.0	1.8	1.4	7400	chrX	11312053	intergenic	not near genes	chrX	11315753	intergenic	not near genes	chrX	11319453	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-377
3231	chrX	11535019	11535046	chrX	11541509	11541536	Burdock	4	6489	6.0	3.5	4.8	0.7	6517	chrX	11535019	intron	Drak +	chrX	11538278	intron	Drak +	chrX	11541536	intron	Drak +	chrX_4_11535001	chrX_11535001	RAL-377
3232	chrX	11633408	11633446	chrX	11640482	11640520	297	7	7074	4.5	5.0	4.8	1.2	7112	chrX	11633408	intron	Ptp10D +	chrX	11636964	intron	Ptp10D +	chrX	11640520	intron	Ptp10D +	chrX_7_11635001	chrX_11635001	RAL-377
3233	chrX	11645090	11645134	chrX	11648279	11648324	NOF	6	3189	4.0	4.0	4.0	1.2	3234	chrX	11645090	intron	Ptp10D +	chrX	11646707	intron	Ptp10D +	chrX	11648324	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	RAL-377
3250	chrX	9845361	9845361	chrX	12546496	12546496	gypsy5	5	2701135	14.0	17.5	15.8	0.3	2701135	chrX	9845361	intron	CG32698 +	chrX	11195928	intergenic	not near genes	chrX	12546496	intron	CG43921 -	chrX_5_11195001	chrX_11195001	RAL-377
3255	chrX	12930582	12930608	chrX	12937718	12937744	HMS-Beagle	11	7136	4.0	6.0	5.0	1.8	7162	chrX	12930582	intron	fne +	chrX	12934163	intron	fne +	chrX	12937744	intron	fne +	chrX_11_12930001	chrX_12930001	RAL-377
3265	chrX	13401466	13401500	chrX	13401838	13401872	jockey	9	372	4.0	2.0	3.0	2.2	406	chrX	13401466	intergenic	CG1673 +,CG12725 -	chrX	13401669	intergenic	CG12725 -,CG1673 +	chrX	13401872	3` UTR	CG12725 -	chrX_9_13400001	chrX_13400001	RAL-377
3266	chrX	13429445	13429491	chrX	13430614	13430660	jockey	11	1169	5.5	3.5	4.5	2.0	1215	chrX	13429445	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430660	intergenic	not near genes	chrX_11_13430001	chrX_13430001	RAL-377
3267	chrX	13463635	13463648	chrX	13469222	13469244	mdg3	6	5595	8.0	3.0	5.5	0.9	5609	chrX	13463635	intron	Neto +	chrX	13466440	intron	Neto +	chrX	13469244	intron	Neto +	chrX_6_13465001	chrX_13465001	RAL-377
3268	chrX	13463649	13463665	chrX	13469221	13469262	mdg3	7	5593	5.5	3.0	4.2	1.3	5613	chrX	13463649	intron	Neto +	chrX	13466456	intron	Neto +	chrX	13469262	intron	Neto +	chrX_7_13465001	chrX_13465001	RAL-377
3277	chrX	13937956	13937998	chrX	13941246	13941289	I-element	12	3291	4.5	3.0	3.8	2.5	3333	chrX	13937956	intron	mamo -	chrX	13939622	intron	mamo -	chrX	13941289	intron	mamo -	chrX_12_13935001	chrX_13935001	RAL-377
3279	chrX	14105012	14105050	chrX	14114182	14114217	roo	7	9164	2.5	3.5	3.0	1.8	9205	chrX	14105012	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114217	5` UTR	CR44657 +	chrX_7_14105001	chrX_14105001	RAL-377
3281	chrX	5204674	5204676	chrX	14152337	14152339	TART-B	4	8947663	10.5	5.5	8.0	0.4	8947665	chrX	5204674	intron,intron	CG15465 +,rg +	chrX	9678506	exon	nej -	chrX	14152339	intergenic	CG12479 -	chrX_4_9675001	chrX_9675001	RAL-377
3282	chrX	14157573	14157591	chrX	14163250	14163261	297	5	5676	7.0	4.0	5.5	0.8	5688	chrX	14157573	intergenic	not near genes	chrX	14160417	intergenic	not near genes	chrX	14163261	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-377
3288	chrX	14416291	14416335	chrX	14421079	14421121	F-element	8	4788	4.0	3.0	3.5	1.8	4830	chrX	14416291	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421121	intron	dpr8 +	chrX_8_14415001	chrX_14415001	RAL-377
3292	chrX	14636446	14636494	chrX	14641907	14641935	I-element	5	5456	2.5	5.0	3.8	1.0	5489	chrX	14636446	intron	NetA -	chrX	14639190	intron	NetA -	chrX	14641935	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-377
3293	chrX	14778016	14778050	chrX	14782833	14782867	Doc	12	4817	5.5	5.5	5.5	1.8	4851	chrX	14778016	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782867	intergenic	Ag5r2 -	chrX_12_14780001	chrX_14780001	RAL-377
3295	chrX	14818744	14818793	chrX	14823967	14824017	copia	6	5219	3.5	4.5	4.0	1.2	5273	chrX	14818744	intron	rut -	chrX	14821380	intron	rut -	chrX	14824017	intron	rut -	chrX_6_14820001	chrX_14820001	RAL-377
3297	chrX	14936840	14936878	chrX	14946117	14946155	roo	13	9277	4.5	4.0	4.2	2.5	9315	chrX	14936840	intron	pdgy -	chrX	14941498	intron	pdgy -	chrX	14946155	intron	pdgy -	chrX_13_14940001	chrX_14940001	RAL-377
3303	chrX	15273707	15273737	chrX	15274868	15274920	1360	8	1177	1.5	5.0	3.2	1.9	1213	chrX	15273707	intergenic	not near genes	chrX	15274314	intergenic	not near genes	chrX	15274920	intergenic	not near genes	chrX_8_15270001	chrX_15270001	RAL-377
3306	chrX	15413034	15413079	chrX	15417355	15417395	Juan	16	4321	4.5	7.0	5.8	2.4	4361	chrX	15413034	intron	Cngl -	chrX	15415214	intron	Cngl -	chrX	15417395	intron	Cngl -	chrX_16_15415001	chrX_15415001	RAL-377
3318	chrX	16222763	16222807	chrX	16231133	16231177	roo	12	8369	1.5	4.5	3.0	3.0	8414	chrX	16222763	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231177	intergenic	not near genes	chrX_12_16225001	chrX_16225001	RAL-377
3322	chrX	16492625	16492674	chrX	16498222	16498271	mdg3	16	5597	3.0	3.0	3.0	4.0	5646	chrX	16492625	intron	para -	chrX	16495448	intron	para -	chrX	16498271	exon	para -	chrX_16_16495001	chrX_16495001	RAL-377
3329	chrX	16936013	16936024	chrX	16936437	16936462	jockey	4	434	0.0	2.5	1.2	1.8	449	chrX	16936013	intron	CG4928 +	chrX	16936238	intron	CG4928 +	chrX	16936462	intron	CG4928 +	chrX_4_16935001	chrX_16935001	RAL-377
3334	chrX	17057916	17057964	chrX	17058177	17058223	pogo	10	260	3.0	1.0	2.0	3.3	307	chrX	17057916	intron	CG45002 -	chrX	17058070	intron	CG45002 -	chrX	17058223	intron	CG45002 -	chrX_10_17055001	chrX_17055001	RAL-377
3336	chrX	17195188	17195231	chrX	17200294	17200337	flea	11	5105	4.5	4.0	4.2	2.1	5149	chrX	17195188	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200337	3` UTR	baz +	chrX_11_17195001	chrX_17195001	RAL-377
3349	chrX	17792937	17792969	chrX	17796255	17796287	flea	4	3318	3.0	3.5	3.2	1.0	3350	chrX	17792937	intron	OdsH +	chrX	17794612	intron	OdsH +	chrX	17796287	intron	OdsH +	chrX_4_17790001	chrX_17790001	RAL-377
3355	chrX	18429475	18429525	chrX	18434806	18434834	Transpac	13	5329	2.0	5.5	3.8	2.7	5359	chrX	18429475	intergenic	not near genes	chrX	18432154	intergenic	not near genes	chrX	18434834	intergenic	not near genes	chrX_13_18430001	chrX_18430001	RAL-377
3368	chrX	18957050	18957091	chrX	18965731	18965771	roo	12	8680	2.5	4.0	3.2	2.9	8721	chrX	18957050	intron	CG43759 +	chrX	18961410	intron	CG43759 +	chrX	18965771	intron	CG43759 +	chrX_12_18960001	chrX_18960001	RAL-377
3370	chrX	19060389	19060439	chrX	19065193	19065243	Doc	14	4804	3.0	4.5	3.8	2.9	4854	chrX	19060389	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065243	intron	CG14190 +	chrX_14_19060001	chrX_19060001	RAL-377
3375	chrX	19136532	19136585	chrX	19143472	19143524	412	8	6940	1.5	0.5	1.0	4.0	6992	chrX	19136532	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143524	3` UTR	RhoGAP18B -	chrX_8_19140001	chrX_19140001	RAL-377
3378	chrX	19356976	19357022	chrX	19358437	19358501	NOF	11	1462	7.5	0.0	3.8	2.3	1525	chrX	19356976	intron	kek5 +	chrX	19357738	intron	kek5 +	chrX	19358501	intron	kek5 +	chrX_11_19355001	chrX_19355001	RAL-377
3379	chrX	19380136	19380187	chrX	19380396	19380448	pogo	21	261	3.5	3.0	3.2	5.0	312	chrX	19380136	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380448	intron	kek5 +	chrX_21_19380001	chrX_19380001	RAL-377
3388	chrX	19710054	19710101	chrX	19711860	19711906	S-element	13	1805	2.5	3.5	3.0	3.2	1852	chrX	19710054	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711906	intron	meso18E -	chrX_13_19710001	chrX_19710001	RAL-377
3404	chrX	20377325	20377341	chrX	20378812	20378826	hobo	6	1484	3.0	4.5	3.8	1.2	1501	chrX	20377325	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378826	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-377
3407	chrX	20504110	20504156	chrX	20505651	20505697	transib2	12	1540	2.0	3.5	2.8	3.2	1587	chrX	20504110	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505697	intron	RhoGAP19D -	chrX_12_20500001	chrX_20500001	RAL-377
3416	chrX	20836706	20836758	chrX	20844328	20844380	roo	14	7622	3.5	2.5	3.0	3.5	7674	chrX	20836706	intron	shakB -	chrX	20840543	intron	shakB -	chrX	20844380	intron	shakB -	chrX_14_20840001	chrX_20840001	RAL-377
3417	chrX	20940699	20940736	chrX	20942187	20942225	hobo	9	1488	3.5	1.0	2.2	2.8	1526	chrX	20940699	intergenic	not near genes	chrX	20941462	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_9_20940001	chrX_20940001	RAL-377
3418	chrX	20956971	20957006	chrX	20962433	20962467	I-element	11	5462	5.5	5.0	5.2	1.8	5496	chrX	20956971	intergenic	not near genes	chrX	20959719	intergenic	not near genes	chrX	20962467	intergenic	Ser6 -	chrX_11_20955001	chrX_20955001	RAL-377
3422	chrX	21086137	21086158	chrX	21087167	21087207	jockey	11	1044	2.5	5.0	3.8	2.3	1070	chrX	21086137	intergenic	not near genes	chrX	21086672	intergenic	not near genes	chrX	21087207	intergenic	not near genes	chrX_11_21085001	chrX_21085001	RAL-377
3429	chrX	21254634	21254665	chrX	21255570	21255581	hopper2	5	930	1.5	0.0	0.8	2.8	947	chrX	21254634	intron	CG32521 -	chrX	21255108	intron	CG32521 -	chrX	21255581	intron	CG32521 -	chrX_5_21255001	chrX_21255001	RAL-377
3437	chrX	21458680	21458719	chrX	21464136	21464175	Ivk	13	5456	5.0	7.0	6.0	1.9	5495	chrX	21458680	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464175	intergenic	not near genes	chrX_13_21460001	chrX_21460001	RAL-377
3438	chrX	21592855	21592884	chrX	21599759	21599788	micropia	13	6904	28.0	16.5	22.2	0.6	6933	chrX	21592855	intergenic	not near genes	chrX	21596322	intergenic	not near genes	chrX	21599788	intergenic	not near genes	chrX_13_21595001	chrX_21595001	RAL-377
3442	chrX	22522619	22522644	chrX	22525458	22525484	NOF	12	2840	6.5	8.0	7.2	1.5	2865	chrX	22522619	intron	CG17600 +	chrX	22524052	intron	CG17600 +	chrX	22525484	intron	CG17600 +	chrX_12_22520001	chrX_22520001	RAL-377
3449	chrX	22681462	22681480	chrX	22688938	22688943	HMS-Beagle2	6	7474	10.5	2.5	6.5	0.8	7481	chrX	22681462	intron	CR44997 +	chrX	22685202	intron	CR44997 +	chrX	22688943	intron	CR44997 +	chrX_6_22685001	chrX_22685001	RAL-377
3451	chrX	22697489	22697521	chrX	22701806	22701838	Juan	16	4317	5.0	6.0	5.5	2.5	4349	chrX	22697489	intron	CR44997 +	chrX	22699664	intron	CR44997 +	chrX	22701838	intron	CR44997 +	chrX_16_22695001	chrX_22695001	RAL-377
3453	chrX	22771491	22771537	chrX	22774797	22774848	297	8	3310	1.5	2.0	1.8	2.9	3357	chrX	22771491	intron	CR44997 +	chrX	22773170	intron	CR44997 +	chrX	22774848	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-377
3460	chrX	22987084	22987124	chrX	22989763	22989803	Burdock	9	2678	4.0	2.0	3.0	2.2	2719	chrX	22987084	intron,intron	stnA -,stnB -	chrX	22988444	intron,intron	stnA -,stnB -	chrX	22989803	intron,intron	stnA -,stnB -	chrX_9_22985001	chrX_22985001	RAL-377
3462	chrX	22996296	22996336	chrX	23003548	23003588	roo	8	7251	2.0	4.5	3.2	1.9	7292	chrX	22996296	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003588	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	RAL-377
3463	chrX	23036362	23036410	chrX	23037783	23037831	pogo	12	1420	3.0	5.0	4.0	2.4	1469	chrX	23036362	intron	CG12061 +	chrX	23037096	intron	CG12061 +	chrX	23037831	intron	CG12061 +	chrX_12_23035001	chrX_23035001	RAL-377