SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47447 47486 chr2L 52572 52584 jockey 20 5121 8.5 6.0 7.2 2.4 5137 chr2L 47447 intron Cda5 - chr2L 50016 intron Cda5 - chr2L 52584 intron Cda5 - chr2L_20_50001 chr2L_50001 RAL-377 2 chr2L 91160 91197 chr2L 91256 91293 10 95 15.0 15.5 15.2 0.6 133 chr2L 91160 intergenic not near genes chr2L 91226 intergenic not near genes chr2L 91293 intergenic not near genes chr2L_10_90001 chr2L_90001 RAL-377 3 chr2L 119719 119758 chr2L 119816 119854 9 96 11.5 13.5 12.5 0.7 135 chr2L 119719 intron,intron CG11455 +,CG4822 - chr2L 119786 intron,intron CG11455 +,CG4822 - chr2L 119854 intron,exon CG11455 +,CG4822 - chr2L_9_115001 chr2L_115001 RAL-377 4 chr2L 127484 127501 chr2L 127599 127610 4 114 6.5 7.0 6.8 0.5 126 chr2L 127484 intron,intron CG11455 +,CG3164 - chr2L 127547 intron,intron CG11455 +,CG3164 - chr2L 127610 intron,intron CG11455 +,CG3164 - chr2L_4_125001 chr2L_125001 RAL-377 5 chr2L 135551 135593 chr2L 136123 136165 8 572 11.5 8.0 9.8 0.7 614 chr2L 135551 intron,5` UTR CG11455 +,CR44185 + chr2L 135858 intron,5` UTR CG11455 +,CR44185 + chr2L 136165 intron,5` UTR CG11455 +,CR44186 + chr2L_8_135001 chr2L_135001 RAL-377 6 chr2L 163824 163876 chr2L 163932 163982 12 108 15.0 10.5 12.8 0.9 158 chr2L 163824 intron spen + chr2L 163903 intron spen + chr2L 163982 intron spen + chr2L_12_160001 chr2L_160001 RAL-377 7 chr2L 172045 172087 chr2L 172146 172187 8 100 12.0 14.0 13.0 0.6 142 chr2L 172045 intron spen + chr2L 172116 intron spen + chr2L 172187 intron spen + chr2L_8_170001 chr2L_170001 RAL-377 8 chr2L 179443 179481 chr2L 179540 179584 7 99 8.0 10.5 9.2 0.7 141 chr2L 179443 intron spen + chr2L 179514 intron spen + chr2L 179584 intron spen + chr2L_7_175001 chr2L_175001 RAL-377 9 chr2L 180274 180320 chr2L 180462 180508 9 188 10.0 15.5 12.8 0.7 234 chr2L 180274 intron spen + chr2L 180391 intron spen + chr2L 180508 intron spen + chr2L_9_180001 chr2L_180001 RAL-377 10 chr2L 263284 263508 chr2L 263445 263610 12 155 9.0 8.5 8.8 1.2 326 chr2L 263284 intron,3` UTR CG3645 -,CG17075 - chr2L 263447 intron,3` UTR CG3645 -,CG17075 - chr2L 263610 intron,3` UTR CG3645 -,CG17075 - chr2L_12_260001 chr2L_260001 RAL-377 11 chr2L 297675 297716 chr2L 297795 297836 11 120 13.0 10.5 11.8 0.9 161 chr2L 297675 intergenic Pi3K21B +,Hop + chr2L 297756 intergenic Pi3K21B +,Hop + chr2L 297836 intergenic Pi3K21B +,Hop + chr2L_11_295001 chr2L_295001 RAL-377 12 chr2L 319890 319936 chr2L 319995 320041 22 102 15.0 18.5 16.8 1.2 151 chr2L 319890 intron Plc21C + chr2L 319966 intron Plc21C + chr2L 320041 intron Plc21C + chr2L_22_315001 chr2L_315001 RAL-377 13 chr2L 321770 321788 chr2L 321874 321892 9 104 12.5 25.0 18.8 0.5 122 chr2L 321770 intron Plc21C + chr2L 321831 intron Plc21C + chr2L 321892 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-377 14 chr2L 318773 318809 chr2L 323410 323446 7 4643 16.5 17.0 16.8 0.4 4673 chr2L 318773 intron,exon Plc21C +,CG11912 - chr2L 321110 intron,exon Plc21C +,CG11911 - chr2L 323446 intron Plc21C + chr2L_7_320001 chr2L_320001 RAL-377 15 chr2L 325120 325154 chr2L 325217 325226 7 93 4.5 7.5 6.0 1.0 106 chr2L 325120 intron Plc21C + chr2L 325173 intron Plc21C + chr2L 325226 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-377 16 chr2L 347871 347919 chr2L 355387 355439 blood 18 7519 4.0 4.0 4.0 3.6 7568 chr2L 347871 3` UTR Plc21C + chr2L 351655 intron Plc21C + chr2L 355439 3` UTR Plc21C + chr2L_18_350001 chr2L_350001 RAL-377 17 chr2L 371429 371458 chr2L 371528 371556 10 99 5.0 7.5 6.2 1.4 127 chr2L 371429 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371556 intergenic not near genes chr2L_10_370001 chr2L_370001 RAL-377 18 chr2L 528422 528446 chr2L 528527 528551 5 105 12.0 4.5 8.2 0.5 129 chr2L 528422 intron ush + chr2L 528486 intron ush + chr2L 528551 intron ush + chr2L_5_525001 chr2L_525001 RAL-377 19 chr2L 630300 630330 chr2L 630412 630442 6 112 10.5 9.0 9.8 0.6 142 chr2L 630300 intergenic not near genes chr2L 630371 intergenic not near genes chr2L 630442 intergenic not near genes chr2L_6_630001 chr2L_630001 RAL-377 20 chr2L 632700 632731 chr2L 632787 632795 4 82 4.0 2.0 3.0 1.0 95 chr2L 632700 intergenic not near genes chr2L 632748 intergenic not near genes chr2L 632795 intergenic not near genes chr2L_4_630001 chr2L_630001 RAL-377 21 chr2L 686912 686938 chr2L 695957 695998 roo 7 9058 1.5 3.5 2.5 2.0 9086 chr2L 686912 intron ds - chr2L 691455 intron ds - chr2L 695998 intron ds - chr2L_7_690001 chr2L_690001 RAL-377 22 chr2L 749533 749576 chr2L 749630 749673 7 97 4.5 6.0 5.2 1.1 140 chr2L 749533 intergenic GABA-B-R3 + chr2L 749603 intergenic GABA-B-R3 + chr2L 749673 intergenic GABA-B-R3 + chr2L_7_745001 chr2L_745001 RAL-377 23 chr2L 753806 753853 chr2L 753915 753962 7 108 12.5 12.0 12.2 0.5 156 chr2L 753806 intron GABA-B-R3 + chr2L 753884 intron GABA-B-R3 + chr2L 753962 intron GABA-B-R3 + chr2L_7_750001 chr2L_750001 RAL-377 24 chr2L 770454 770491 chr2L 772249 772272 Bari1 6 1791 2.0 6.5 4.2 1.2 1818 chr2L 770454 intergenic not near genes chr2L 771363 intergenic not near genes chr2L 772272 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-377 25 chr2L 802082 802117 chr2L 802234 802267 6 151 12.5 11.5 12.0 0.5 185 chr2L 802082 intergenic not near genes chr2L 802174 intergenic not near genes chr2L 802267 intergenic not near genes chr2L_6_800001 chr2L_800001 RAL-377 26 chr2L 849456 849483 chr2L 849564 849591 8 110 6.0 7.0 6.5 1.1 135 chr2L 849456 intron drongo - chr2L 849524 intron drongo - chr2L 849591 intron drongo - chr2L_8_845001 chr2L_845001 RAL-377 27 chr2L 853303 853350 chr2L 853409 853455 7 104 11.0 10.0 10.5 0.6 152 chr2L 853303 intron kraken + chr2L 853379 intron kraken + chr2L 853455 intron kraken + chr2L_7_850001 chr2L_850001 RAL-377 28 chr2L 877826 877875 chr2L 877923 877976 8 98 11.0 12.0 11.5 0.6 150 chr2L 877826 3` UTR,exon CG15824 -,ninaA + chr2L 877901 3` UTR,intron CG15824 -,ninaA + chr2L 877976 3` UTR,exon CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-377 29 chr2L 898363 898375 chr2L 898449 898463 4 86 10.0 9.5 9.8 0.4 100 chr2L 898363 intergenic Lsp1beta +,CR45348 - chr2L 898413 intergenic Lsp1beta +,CR45348 - chr2L 898463 intergenic Lsp1beta +,CR45348 - chr2L_4_895001 chr2L_895001 RAL-377 30 chr2L 906524 906573 chr2L 906626 906675 4 99 6.5 6.0 6.2 0.6 151 chr2L 906524 intergenic not near genes chr2L 906600 intergenic not near genes chr2L 906675 intergenic not near genes chr2L_4_905001 chr2L_905001 RAL-377 31 chr2L 912248 912301 chr2L 912669 912680 9 411 5.5 7.0 6.2 1.2 432 chr2L 912248 intergenic not near genes chr2L 912464 intergenic not near genes chr2L 912680 intergenic CR44061 - chr2L_9_910001 chr2L_910001 RAL-377 32 chr2L 922452 922489 chr2L 922553 922588 5 101 3.5 5.5 4.5 0.9 136 chr2L 922452 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922588 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-377 33 chr2L 936570 936585 chr2L 936680 936695 4 110 10.5 8.0 9.2 0.4 125 chr2L 936570 intron CG4341 + chr2L 936632 intron CG4341 + chr2L 936695 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-377 34 chr2L 955988 955994 chr2L 956103 956110 5 116 0.0 8.0 4.0 1.0 122 chr2L 955988 intron CG4341 + chr2L 956049 intron CG4341 + chr2L 956110 intron CG4341 + chr2L_5_955001 chr2L_955001 RAL-377 35 chr2L 976858 976889 chr2L 984514 984545 roo 13 7656 11.5 2.0 6.8 1.7 7687 chr2L 976858 intergenic not near genes chr2L 980702 intergenic not near genes chr2L 984545 intergenic not near genes chr2L_13_980001 chr2L_980001 RAL-377 36 chr2L 996707 996745 chr2L 1005826 1005864 roo 15 9116 1.0 5.5 3.2 3.6 9157 chr2L 996707 intergenic not near genes chr2L 1001286 intergenic not near genes chr2L 1005864 intergenic not near genes chr2L_15_1000001 chr2L_1000001 RAL-377 37 chr2L 1036440 1036466 chr2L 1036549 1036560 4 108 1.0 1.0 1.0 2.0 120 chr2L 1036440 intron IA-2 - chr2L 1036500 intron IA-2 - chr2L 1036560 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-377 38 chr2L 1067334 1067363 chr2L 1067458 1067477 6 121 14.5 12.0 13.2 0.4 143 chr2L 1067334 intron S - chr2L 1067406 intron S - chr2L 1067477 intron S - chr2L_6_1065001 chr2L_1065001 RAL-377 39 chr2L 1074044 1074089 chr2L 1074140 1074189 8 98 13.0 12.0 12.5 0.6 145 chr2L 1074044 intron S - chr2L 1074116 intron S - chr2L 1074189 intron S - chr2L_8_1070001 chr2L_1070001 RAL-377 40 chr2L 1090360 1090378 chr2L 1090470 1090488 7 110 0.0 5.0 2.5 2.0 128 chr2L 1090360 intron CG4629 - chr2L 1090424 intron CG4629 - chr2L 1090488 intron CG4629 - chr2L_7_1090001 chr2L_1090001 RAL-377 41 chr2L 1156838 1156895 chr2L 1156963 1157020 10 124 3.5 5.0 4.2 1.9 182 chr2L 1156838 intron capt - chr2L 1156929 intron capt - chr2L 1157020 intron capt - chr2L_10_1155001 chr2L_1155001 RAL-377 42 chr2L 1164229 1164281 chr2L 1164335 1164387 22 105 1.5 2.0 1.8 7.9 158 chr2L 1164229 intergenic IntS14 +,CG5080 - chr2L 1164308 intergenic IntS14 +,CG5080 - chr2L 1164387 intergenic IntS14 + chr2L_22_1160001 chr2L_1160001 RAL-377 43 chr2L 1177409 1177450 chr2L 1177561 1177610 9 159 10.0 7.5 8.8 0.9 201 chr2L 1177409 3` UTR CG4887 + chr2L 1177510 3` UTR CG4887 + chr2L 1177610 intergenic CG4887 +,CG4896 + chr2L_9_1175001 chr2L_1175001 RAL-377 44 chr2L 1178668 1178699 chr2L 1178772 1178803 4 104 18.0 15.5 16.8 0.2 135 chr2L 1178668 intron CG4896 + chr2L 1178736 intron CG4896 + chr2L 1178803 intron CG4896 + chr2L_4_1175001 chr2L_1175001 RAL-377 45 chr2L 1220108 1220160 chr2L 1227594 1227645 blood 15 7484 7.5 2.5 5.0 2.5 7537 chr2L 1220108 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227645 intron CG42329 + chr2L_15_1220001 chr2L_1220001 RAL-377 46 chr2L 1237980 1238004 chr2L 1238084 1238108 5 104 8.5 9.5 9.0 0.5 128 chr2L 1237980 intergenic not near genes chr2L 1238044 intergenic not near genes chr2L 1238108 intergenic not near genes chr2L_5_1235001 chr2L_1235001 RAL-377 47 chr2L 1244396 1244434 chr2L 1244493 1244531 7 96 6.5 10.5 8.5 0.7 135 chr2L 1244396 intergenic not near genes chr2L 1244464 intergenic not near genes chr2L 1244531 intergenic not near genes chr2L_7_1240001 chr2L_1240001 RAL-377 48 chr2L 1261211 1261258 chr2L 1261312 1261359 13 101 3.0 2.5 2.8 3.4 148 chr2L 1261211 intron robo3 + chr2L 1261285 intron robo3 + chr2L 1261359 intron robo3 + chr2L_13_1260001 chr2L_1260001 RAL-377 49 chr2L 1272424 1272440 chr2L 1272534 1272550 5 110 13.0 12.5 12.8 0.4 126 chr2L 1272424 intron robo3 + chr2L 1272487 intron robo3 + chr2L 1272550 intron robo3 + chr2L_5_1270001 chr2L_1270001 RAL-377 50 chr2L 1287270 1287318 chr2L 1287366 1287414 6 96 14.5 13.0 13.8 0.4 144 chr2L 1287270 intron robo3 + chr2L 1287342 intron robo3 + chr2L 1287414 intron robo3 + chr2L_6_1285001 chr2L_1285001 RAL-377 51 chr2L 1301749 1301781 chr2L 1302306 1302340 gypsy 4 558 0.5 9.0 4.8 0.7 591 chr2L 1301749 intergenic not near genes chr2L 1302044 intergenic not near genes chr2L 1302340 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-377 52 chr2L 1332861 1332905 chr2L 1332970 1333013 4 101 8.0 8.5 8.2 0.4 152 chr2L 1332861 intergenic not near genes chr2L 1332937 intergenic not near genes chr2L 1333013 intergenic not near genes chr2L_4_1330001 chr2L_1330001 RAL-377 53 chr2L 1459837 1459862 chr2L 1459963 1459983 5 124 12.0 11.0 11.5 0.4 146 chr2L 1459837 intergenic not near genes chr2L 1459910 intergenic not near genes chr2L 1459983 intergenic not near genes chr2L_5_1455001 chr2L_1455001 RAL-377 54 chr2L 1570671 1570717 chr2L 1573563 1573608 F-element 11 2892 3.5 2.0 2.8 2.9 2937 chr2L 1570671 intron haf + chr2L 1572140 intron haf + chr2L 1573608 intron haf + chr2L_11_1570001 chr2L_1570001 RAL-377 55 chr2L 1590954 1590982 chr2L 1591045 1591058 11 91 11.0 8.0 9.5 1.0 104 chr2L 1590954 intron haf + chr2L 1591006 intron haf + chr2L 1591058 intron haf + chr2L_11_1590001 chr2L_1590001 RAL-377 56 chr2L 1591866 1591888 chr2L 1591970 1591992 7 104 9.5 13.5 11.5 0.6 126 chr2L 1591866 intron haf + chr2L 1591929 intron haf + chr2L 1591992 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-377 57 chr2L 1615377 1615412 chr2L 1615478 1615512 5 101 9.5 10.5 10.0 0.5 135 chr2L 1615377 intergenic not near genes chr2L 1615444 intergenic not near genes chr2L 1615512 intergenic not near genes chr2L_5_1615001 chr2L_1615001 RAL-377 58 chr2L 1630241 1630251 chr2L 1630337 1630348 6 96 10.0 7.5 8.8 0.6 107 chr2L 1630241 intergenic not near genes chr2L 1630294 intergenic not near genes chr2L 1630348 intergenic not near genes chr2L_6_1630001 chr2L_1630001 RAL-377 59 chr2L 1634746 1634763 chr2L 1634857 1634869 8 109 3.0 6.5 4.8 1.4 123 chr2L 1634746 intergenic not near genes chr2L 1634808 intergenic not near genes chr2L 1634869 intergenic not near genes chr2L_8_1630001 chr2L_1630001 RAL-377 60 chr2L 1678938 1678999 chr2L 1686441 1686484 blood 14 7487 3.5 4.5 4.0 2.8 7546 chr2L 1678938 intron chinmo + chr2L 1682711 intron chinmo + chr2L 1686484 intron chinmo + chr2L_14_1680001 chr2L_1680001 RAL-377 61 chr2L 1711347 1711385 chr2L 1711680 1711729 mdg3 10 338 5.5 4.0 4.8 1.7 382 chr2L 1711347 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711538 3` UTR frtz - chr2L 1711729 3` UTR frtz - chr2L_10_1710001 chr2L_1710001 RAL-377 62 chr2L 1742553 1742587 chr2L 1743055 1743091 5 500 9.0 4.5 6.8 0.6 538 chr2L 1742553 intron CG17646 + chr2L 1742822 intron CG17646 + chr2L 1743091 intron CG17646 + chr2L_5_1740001 chr2L_1740001 RAL-377 63 chr2L 1795431 1795644 chr2L 1795539 1795760 15 108 13.0 10.5 11.8 1.2 329 chr2L 1795431 intergenic not near genes chr2L 1795596 intergenic not near genes chr2L 1795760 intergenic not near genes chr2L_15_1795001 chr2L_1795001 RAL-377 64 chr2L 1842264 1842318 chr2L 1842363 1842414 10 96 2.5 8.0 5.2 1.6 150 chr2L 1842264 intron wry + chr2L 1842339 intron wry + chr2L 1842414 intron wry + chr2L_10_1840001 chr2L_1840001 RAL-377 65 chr2L 1925480 1925500 chr2L 1925577 1925596 4 97 10.5 11.0 10.8 0.3 116 chr2L 1925480 intron CG7337 + chr2L 1925538 intron CG7337 + chr2L 1925596 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-377 66 chr2L 1933646 1933685 chr2L 1933747 1933786 4 101 12.5 8.5 10.5 0.3 140 chr2L 1933646 intron CG7337 + chr2L 1933716 intron CG7337 + chr2L 1933786 intron CG7337 + chr2L_4_1930001 chr2L_1930001 RAL-377 67 chr2L 1948617 1948627 chr2L 1948744 1948754 4 127 5.5 5.5 5.5 0.6 137 chr2L 1948617 intergenic not near genes chr2L 1948686 intergenic not near genes chr2L 1948754 intergenic not near genes chr2L_4_1945001 chr2L_1945001 RAL-377 68 chr2L 1957063 1957107 chr2L 1957162 1957205 5 97 5.0 6.0 5.5 0.8 142 chr2L 1957063 intron erm - chr2L 1957134 intron erm - chr2L 1957205 intron erm - chr2L_5_1955001 chr2L_1955001 RAL-377 69 chr2L 1958729 1958778 chr2L 1958826 1958870 11 95 6.5 7.5 7.0 1.4 141 chr2L 1958729 intron erm - chr2L 1958800 intron erm - chr2L 1958870 intron erm - chr2L_11_1955001 chr2L_1955001 RAL-377 70 chr2L 1987873 1987882 chr2L 1988096 1988116 4 230 9.0 8.0 8.5 0.4 243 chr2L 1987873 intergenic Got2 -,Npc2a + chr2L 1987994 intergenic Got2 -,Npc2a + chr2L 1988116 intergenic Npc2a +,Got2 - chr2L_4_1985001 chr2L_1985001 RAL-377 71 chr2L 1998754 1998795 chr2L 1998857 1998897 8 103 1.0 4.5 2.8 2.1 143 chr2L 1998754 intron CG33543 - chr2L 1998826 intron CG33543 - chr2L 1998897 intron CG33543 - chr2L_8_1995001 chr2L_1995001 RAL-377 72 chr2L 2046313 2046357 chr2L 2046410 2046439 6 94 14.5 16.5 15.5 0.4 126 chr2L 2046313 intron Kebab + chr2L 2046376 intron Kebab + chr2L 2046439 exon Kebab + chr2L_6_2045001 chr2L_2045001 RAL-377 73 chr2L 2049200 2049238 chr2L 2049299 2049342 5 102 6.0 15.5 10.8 0.4 142 chr2L 2049200 intergenic not near genes chr2L 2049271 intergenic not near genes chr2L 2049342 intergenic not near genes chr2L_5_2045001 chr2L_2045001 RAL-377 74 chr2L 2075890 2075928 chr2L 2076041 2076093 5 154 8.0 12.5 10.2 0.4 203 chr2L 2075890 intron dpr3 - chr2L 2075992 intron dpr3 - chr2L 2076093 intron dpr3 - chr2L_5_2075001 chr2L_2075001 RAL-377 75 chr2L 2100376 2100379 chr2L 2109529 2109547 roo 5 9165 8.0 3.5 5.8 0.7 9171 chr2L 2100376 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109547 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-377 76 chr2L 2100380 2100386 chr2L 2109525 2109555 roo 6 9161 6.5 2.5 4.5 1.1 9175 chr2L 2100380 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109555 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-377 77 chr2L 2100387 2100396 chr2L 2109524 2109567 roo 6 9162 5.0 2.5 3.8 1.2 9180 chr2L 2100387 intron dpr3 - chr2L 2104977 intron dpr3 - chr2L 2109567 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-377 78 chr2L 2177364 2177410 chr2L 2177464 2177510 6 96 14.0 14.0 14.0 0.4 146 chr2L 2177364 intron aop - chr2L 2177437 intron aop - chr2L 2177510 intron aop - chr2L_6_2175001 chr2L_2175001 RAL-377 79 chr2L 2311069 2311092 chr2L 2311179 2311189 4 110 2.0 1.0 1.5 1.6 120 chr2L 2311069 intron CG9967 - chr2L 2311129 intron CG9967 - chr2L 2311189 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-377 80 chr2L 2330854 2330900 chr2L 2330963 2331009 13 109 14.0 12.0 13.0 0.9 155 chr2L 2330854 intron,intron CG9967 -,eys + chr2L 2330932 intron,intron CG9967 -,eys + chr2L 2331009 intron,intron CG9967 -,eys + chr2L_13_2330001 chr2L_2330001 RAL-377 81 chr2L 2355296 2355303 chr2L 2355416 2355423 4 120 19.0 6.0 12.5 0.3 127 chr2L 2355296 intron,intron CG9967 -,eys + chr2L 2355360 intron,intron CG9967 -,eys + chr2L 2355423 intron,intron CG9967 -,eys + chr2L_4_2355001 chr2L_2355001 RAL-377 82 chr2L 2372343 2372401 chr2L 2372449 2372499 10 101 0.0 3.5 1.8 3.6 156 chr2L 2372343 intergenic CG3609 - chr2L 2372421 intergenic CG3609 - chr2L 2372499 3` UTR CG3609 - chr2L_10_2370001 chr2L_2370001 RAL-377 83 chr2L 2504207 2504229 chr2L 2504305 2504327 6 95 9.5 12.5 11.0 0.5 120 chr2L 2504207 intergenic not near genes chr2L 2504267 intergenic not near genes chr2L 2504327 intergenic not near genes chr2L_6_2500001 chr2L_2500001 RAL-377 84 chr2L 2544503 2544547 chr2L 2544627 2544666 4 122 3.0 5.5 4.2 0.8 163 chr2L 2544503 intergenic not near genes chr2L 2544584 intergenic not near genes chr2L 2544666 intergenic not near genes chr2L_4_2540001 chr2L_2540001 RAL-377 85 chr2L 2552721 2552763 chr2L 2552821 2552835 12 98 11.0 11.5 11.2 1.0 114 chr2L 2552721 exon CG3515 - chr2L 2552778 5` UTR CG3515 - chr2L 2552835 intergenic CG3515 - chr2L_12_2550001 chr2L_2550001 RAL-377 86 chr2L 2565537 2565564 chr2L 2571625 2571652 297 9 6089 2.5 7.0 4.8 1.6 6115 chr2L 2565537 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571652 exon Cyp309a2 - chr2L_9_2565001 chr2L_2565001 RAL-377 87 chr2L 2605434 2605478 chr2L 2605759 2605803 8 325 6.0 1.0 3.5 1.8 369 chr2L 2605434 intergenic not near genes chr2L 2605618 intergenic not near genes chr2L 2605803 intergenic not near genes chr2L_8_2605001 chr2L_2605001 RAL-377 88 chr2L 2615001 2615043 chr2L 2615581 2615623 10 579 17.5 6.0 11.8 0.8 622 chr2L 2615001 intergenic not near genes chr2L 2615312 intergenic not near genes chr2L 2615623 intergenic not near genes chr2L_10_2615001 chr2L_2615001 RAL-377 89 chr2L 2653864 2653869 chr2L 2653968 2653972 4 104 12.0 1.0 6.5 0.5 108 chr2L 2653864 3` UTR Prosbeta4R1 + chr2L 2653918 3` UTR Prosbeta4R1 + chr2L 2653972 intergenic Prosbeta4R1 +,Or23a + chr2L_4_2650001 chr2L_2650001 RAL-377 90 chr2L 2656895 2656932 chr2L 2656984 2657031 11 96 10.5 13.5 12.0 0.8 136 chr2L 2656895 3` UTR Prosbeta4R2 + chr2L 2656963 3` UTR Prosbeta4R2 + chr2L 2657031 3` UTR Prosbeta4R2 + chr2L_11_2655001 chr2L_2655001 RAL-377 91 chr2L 2661225 2661229 chr2L 2663033 2663075 I-element 4 1825 0.0 0.5 0.2 3.3 1850 chr2L 2661225 intergenic not near genes chr2L 2662150 intergenic not near genes chr2L 2663075 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-377 92 chr2L 2667604 2667624 chr2L 2667703 2667723 5 99 10.5 7.5 9.0 0.5 119 chr2L 2667604 intergenic not near genes chr2L 2667664 intergenic not near genes chr2L 2667723 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-377 93 chr2L 2695727 2695763 chr2L 2695972 2696008 5 243 9.0 7.5 8.2 0.5 281 chr2L 2695727 intron,exon CG31690 +,CG15398 - chr2L 2695868 intron,exon CG31690 +,CG15398 - chr2L 2696008 intron,intron CG31690 +,CG15398 - chr2L_5_2695001 chr2L_2695001 RAL-377 94 chr2L 2698861 2698894 chr2L 2698968 2698996 4 106 8.5 12.5 10.5 0.3 135 chr2L 2698861 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2698996 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-377 95 chr2L 2713506 2713529 chr2L 2713625 2713648 6 118 9.0 3.5 6.2 0.8 142 chr2L 2713506 intron CG31690 + chr2L 2713577 intron CG31690 + chr2L 2713648 intron CG31690 + chr2L_6_2710001 chr2L_2710001 RAL-377 96 chr2L 2772596 2772625 chr2L 2779194 2779224 297 9 6600 6.5 4.5 5.5 1.4 6628 chr2L 2772596 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779224 3` UTR Syt1 - chr2L_9_2775001 chr2L_2775001 RAL-377 97 chr2L 2830405 2830416 chr2L 2830555 2830566 6 150 3.5 4.0 3.8 1.2 161 chr2L 2830405 intergenic Duox - chr2L 2830486 intergenic Duox - chr2L 2830566 intergenic Duox - chr2L_6_2830001 chr2L_2830001 RAL-377 98 chr2L 2833737 2833788 chr2L 2833834 2833886 14 96 9.0 8.5 8.8 1.4 149 chr2L 2833737 intergenic not near genes chr2L 2833812 intergenic not near genes chr2L 2833886 intergenic not near genes chr2L_14_2830001 chr2L_2830001 RAL-377 99 chr2L 2885354 2885393 chr2L 2885451 2885490 8 96 17.5 17.5 17.5 0.4 136 chr2L 2885354 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885490 intron NTPase - chr2L_8_2885001 chr2L_2885001 RAL-377 100 chr2L 2909885 2909931 chr2L 2909989 2910034 10 104 6.0 9.0 7.5 1.2 149 chr2L 2909885 intron lilli + chr2L 2909960 intron lilli + chr2L 2910034 intron lilli + chr2L_10_2905001 chr2L_2905001 RAL-377 101 chr2L 2920445 2920499 chr2L 2920895 2920950 11 449 9.0 4.0 6.5 1.5 505 chr2L 2920445 intron lilli + chr2L 2920698 intron lilli + chr2L 2920950 intron lilli + chr2L_11_2920001 chr2L_2920001 RAL-377 102 chr2L 2922070 2922120 chr2L 2922166 2922217 8 97 14.0 14.0 14.0 0.5 147 chr2L 2922070 intron lilli + chr2L 2922144 intron lilli + chr2L 2922217 intron lilli + chr2L_8_2920001 chr2L_2920001 RAL-377 103 chr2L 2927949 2927965 chr2L 2928056 2928069 4 104 7.5 8.5 8.0 0.4 120 chr2L 2927949 intron lilli + chr2L 2928009 intron lilli + chr2L 2928069 intron lilli + chr2L_4_2925001 chr2L_2925001 RAL-377 104 chr2L 2964287 2964304 chr2L 2964385 2964402 5 98 12.0 9.0 10.5 0.4 115 chr2L 2964287 3` UTR Rbp9 + chr2L 2964344 3` UTR Rbp9 + chr2L 2964402 3` UTR Rbp9 + chr2L_5_2960001 chr2L_2960001 RAL-377 105 chr2L 3049218 3049263 chr2L 3049324 3049369 13 106 16.0 14.5 15.2 0.8 151 chr2L 3049218 intron v(2)k05816 + chr2L 3049294 intron v(2)k05816 + chr2L 3049369 intron v(2)k05816 + chr2L_13_3045001 chr2L_3045001 RAL-377 106 chr2L 3072990 3073065 chr2L 3078259 3078288 copia 4 5234 1.0 4.5 2.8 1.1 5298 chr2L 3072990 intron toc - chr2L 3075639 intron toc - chr2L 3078288 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-377 107 chr2L 3108865 3108896 chr2L 3108962 3108993 16 97 2.5 4.0 3.2 3.8 128 chr2L 3108865 intron toc - chr2L 3108929 intron toc - chr2L 3108993 intron toc - chr2L_16_3105001 chr2L_3105001 RAL-377 108 chr2L 3113413 3113447 chr2L 3113528 3113562 6 115 10.5 12.5 11.5 0.5 149 chr2L 3113413 intron toc - chr2L 3113488 intron toc - chr2L 3113562 intron toc - chr2L_6_3110001 chr2L_3110001 RAL-377 109 chr2L 3181276 3181299 chr2L 3181381 3181405 6 106 8.5 4.5 6.5 0.8 129 chr2L 3181276 intron CG34393 - chr2L 3181340 intron CG34393 - chr2L 3181405 intron CG34393 - chr2L_6_3180001 chr2L_3180001 RAL-377 110 chr2L 3186457 3186480 chr2L 3186561 3186584 4 104 15.0 9.5 12.2 0.3 127 chr2L 3186457 intron CG34393 - chr2L 3186520 intron CG34393 - chr2L 3186584 intron CG34393 - chr2L_4_3185001 chr2L_3185001 RAL-377 111 chr2L 3189763 3189792 chr2L 3189868 3189897 7 104 10.5 10.0 10.2 0.6 134 chr2L 3189763 intron CG34393 - chr2L 3189830 intron CG34393 - chr2L 3189897 intron CG34393 - chr2L_7_3185001 chr2L_3185001 RAL-377 112 chr2L 3192199 3192240 chr2L 3192330 3192370 10 128 5.5 8.0 6.8 1.3 171 chr2L 3192199 exon CG34393 - chr2L 3192284 intron CG34393 - chr2L 3192370 intron CG34393 - chr2L_10_3190001 chr2L_3190001 RAL-377 113 chr2L 3201094 3201149 chr2L 3201197 3201242 13 100 9.0 12.0 10.5 1.1 148 chr2L 3201094 intergenic not near genes chr2L 3201168 intergenic not near genes chr2L 3201242 intergenic not near genes chr2L_13_3200001 chr2L_3200001 RAL-377 114 chr2L 3202737 3202772 chr2L 3210186 3210221 mdg1 8 7449 3.0 5.0 4.0 1.6 7484 chr2L 3202737 intergenic not near genes chr2L 3206479 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_8_3205001 chr2L_3205001 RAL-377 115 chr2L 3251477 3251519 chr2L 3259062 3259104 springer 13 7585 3.5 3.5 3.5 2.9 7627 chr2L 3251477 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259104 intergenic not near genes chr2L_13_3255001 chr2L_3255001 RAL-377 116 chr2L 3272953 3273048 chr2L 3273047 3273154 5 98 10.5 6.5 8.5 0.5 201 chr2L 3272953 intergenic not near genes chr2L 3273054 intergenic not near genes chr2L 3273154 intergenic not near genes chr2L_5_3270001 chr2L_3270001 RAL-377 117 chr2L 3347383 3347426 chr2L 3347478 3347522 4 90 16.5 16.5 16.5 0.2 139 chr2L 3347383 intron E23 - chr2L 3347452 intron E23 - chr2L 3347522 intron E23 - chr2L_4_3345001 chr2L_3345001 RAL-377 118 chr2L 3366991 3367037 chr2L 3367161 3367207 6 170 8.0 8.0 8.0 0.7 216 chr2L 3366991 intron CG34394 - chr2L 3367099 intron CG34394 - chr2L 3367207 intron CG34394 - chr2L_6_3365001 chr2L_3365001 RAL-377 119 chr2L 3388583 3388626 chr2L 3388839 3388887 pogo 16 260 5.5 3.5 4.5 2.9 304 chr2L 3388583 intergenic CG42460 - chr2L 3388735 intergenic CG42460 - chr2L 3388887 intergenic CG42460 -,CR44791 + chr2L_16_3385001 chr2L_3385001 RAL-377 120 chr2L 3437143 3437161 chr2L 3437246 3437264 5 102 8.5 12.0 10.2 0.4 121 chr2L 3437143 intergenic not near genes chr2L 3437204 intergenic not near genes chr2L 3437264 intergenic not near genes chr2L_5_3435001 chr2L_3435001 RAL-377 121 chr2L 3439421 3439444 chr2L 3439528 3439548 5 106 10.0 17.0 13.5 0.3 127 chr2L 3439421 intergenic not near genes chr2L 3439484 intergenic not near genes chr2L 3439548 intergenic not near genes chr2L_5_3435001 chr2L_3435001 RAL-377 122 chr2L 3471100 3471151 chr2L 3471243 3471294 8 138 14.5 19.5 17.0 0.4 194 chr2L 3471100 intron CG31776 + chr2L 3471197 exon CG31776 + chr2L 3471294 exon CG31776 + chr2L_8_3470001 chr2L_3470001 RAL-377 123 chr2L 3482134 3482160 chr2L 3482243 3482270 4 110 16.5 13.5 15.0 0.2 136 chr2L 3482134 intron CG15414 - chr2L 3482202 intron CG15414 - chr2L 3482270 intron CG15414 - chr2L_4_3480001 chr2L_3480001 RAL-377 124 chr2L 3498699 3498723 chr2L 3498796 3498820 5 97 13.5 9.5 11.5 0.4 121 chr2L 3498699 intron tim - chr2L 3498760 intron tim - chr2L 3498820 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-377 125 chr2L 3508359 3508374 chr2L 3508442 3508472 6 96 10.5 13.5 12.0 0.5 113 chr2L 3508359 intergenic CR45299 +,tim - chr2L 3508416 intergenic CR45299 +,tim - chr2L 3508472 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-377 126 chr2L 3584675 3584703 chr2L 3584772 3584800 6 97 11.0 9.5 10.2 0.5 125 chr2L 3584675 intergenic not near genes chr2L 3584738 intergenic not near genes chr2L 3584800 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-377 127 chr2L 3616573 3616587 chr2L 3616670 3616682 5 96 4.0 9.0 6.5 0.7 109 chr2L 3616573 5` UTR CR44310 + chr2L 3616628 5` UTR CR44310 + chr2L 3616682 5` UTR CR44310 + chr2L_5_3615001 chr2L_3615001 RAL-377 128 chr2L 3649767 3649811 chr2L 3654990 3655034 copia 12 5222 5.0 3.0 4.0 2.4 5267 chr2L 3649767 intron for - chr2L 3652400 intron for - chr2L 3655034 intron for - chr2L_12_3650001 chr2L_3650001 RAL-377 129 chr2L 3663291 3663341 chr2L 3663389 3663434 19 98 3.5 4.0 3.8 4.0 143 chr2L 3663291 5` UTR CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663434 intron CG34340 + chr2L_19_3660001 chr2L_3660001 RAL-377 130 chr2L 3673866 3673891 chr2L 3673982 3674012 4 120 9.0 6.0 7.5 0.5 146 chr2L 3673866 intron CG34340 + chr2L 3673939 intron CG34340 + chr2L 3674012 intron CG34340 + chr2L_4_3670001 chr2L_3670001 RAL-377 131 chr2L 3686350 3686375 chr2L 3686460 3686485 5 109 16.0 14.0 15.0 0.3 135 chr2L 3686350 intron CG34340 + chr2L 3686418 intron CG34340 + chr2L 3686485 intron CG34340 + chr2L_5_3685001 chr2L_3685001 RAL-377 132 chr2L 3690613 3690642 chr2L 3690737 3690766 4 123 7.5 1.0 4.2 0.8 153 chr2L 3690613 intron CG34340 + chr2L 3690690 intron CG34340 + chr2L 3690766 intron CG34340 + chr2L_4_3690001 chr2L_3690001 RAL-377 133 chr2L 3784785 3784807 chr2L 3785664 3785686 8 879 26.0 11.0 18.5 0.4 901 chr2L 3784785 intergenic CG31960 + chr2L 3785236 exon CG31960 + chr2L 3785686 intergenic CG31958 +,CG31960 + chr2L_8_3785001 chr2L_3785001 RAL-377 134 chr2L 3784697 3784712 chr2L 3785616 3785638 7 918 29.0 13.5 21.2 0.3 941 chr2L 3784697 intergenic CG31960 + chr2L 3785168 exon CG31960 + chr2L 3785638 intergenic CG31960 +,CG31958 + chr2L_7_3785001 chr2L_3785001 RAL-377 135 chr2L 3792478 3792497 chr2L 3792578 3792608 6 108 13.5 12.0 12.8 0.4 130 chr2L 3792478 intron CG3921 + chr2L 3792543 intron CG3921 + chr2L 3792608 exon CG3921 + chr2L_6_3790001 chr2L_3790001 RAL-377 136 chr2L 3819606 3819626 chr2L 3819702 3819722 7 96 12.5 14.0 13.2 0.5 116 chr2L 3819606 intergenic not near genes chr2L 3819664 intergenic not near genes chr2L 3819722 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-377 137 chr2L 3828081 3828125 chr2L 3828460 3828504 4 376 12.0 12.5 12.2 0.3 423 chr2L 3828081 intergenic not near genes chr2L 3828292 intergenic not near genes chr2L 3828504 intergenic not near genes chr2L_4_3825001 chr2L_3825001 RAL-377 138 chr2L 3936635 3936656 chr2L 3936735 3936756 5 100 2.0 3.0 2.5 1.4 121 chr2L 3936635 intron fred - chr2L 3936696 intron fred - chr2L 3936756 intron fred - chr2L_5_3935001 chr2L_3935001 RAL-377 139 chr2L 3948039 3948072 chr2L 3948147 3948168 4 105 5.0 7.5 6.2 0.6 129 chr2L 3948039 intron fred - chr2L 3948104 intron fred - chr2L 3948168 intron fred - chr2L_4_3945001 chr2L_3945001 RAL-377 140 chr2L 3999162 3999207 chr2L 3999265 3999310 7 101 7.5 7.5 7.5 0.8 148 chr2L 3999162 intergenic not near genes chr2L 3999236 intergenic not near genes chr2L 3999310 intergenic not near genes chr2L_7_3995001 chr2L_3995001 RAL-377 141 chr2L 4001655 4001679 chr2L 4001773 4001787 6 116 6.0 12.5 9.2 0.6 132 chr2L 4001655 intergenic CR45344 + chr2L 4001721 intergenic CR45344 + chr2L 4001787 intergenic CR45344 + chr2L_6_4000001 chr2L_4000001 RAL-377 142 chr2L 4020017 4020021 chr2L 4020104 4020117 4 92 7.0 5.0 6.0 0.6 100 chr2L 4020017 intergenic not near genes chr2L 4020067 intergenic not near genes chr2L 4020117 intergenic not near genes chr2L_4_4020001 chr2L_4020001 RAL-377 143 chr2L 4037781 4037807 chr2L 4037888 4037914 9 107 4.5 3.5 4.0 1.8 133 chr2L 4037781 intron ed + chr2L 4037848 intron ed + chr2L 4037914 intron ed + chr2L_9_4035001 chr2L_4035001 RAL-377 144 chr2L 4054527 4054574 chr2L 4054635 4054683 10 109 2.5 5.0 3.8 2.1 156 chr2L 4054527 intron ed + chr2L 4054605 intron ed + chr2L 4054683 intron ed + chr2L_10_4050001 chr2L_4050001 RAL-377 145 chr2L 4060160 4060198 chr2L 4060256 4060294 8 96 13.5 12.0 12.8 0.6 134 chr2L 4060160 intron ed + chr2L 4060227 intron ed + chr2L 4060294 intron ed + chr2L_8_4060001 chr2L_4060001 RAL-377 146 chr2L 4066030 4066064 chr2L 4068875 4068907 Juan 4 2844 4.0 5.0 4.5 0.7 2877 chr2L 4066030 intron ed + chr2L 4067468 intron ed + chr2L 4068907 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-377 147 chr2L 4110768 4110811 chr2L 4110970 4111013 11 202 15.0 14.5 14.8 0.7 245 chr2L 4110768 intron ed + chr2L 4110890 intron ed + chr2L 4111013 intron ed + chr2L_11_4110001 chr2L_4110001 RAL-377 148 chr2L 4125252 4125265 chr2L 4125377 4125388 4 124 7.5 14.0 10.8 0.3 136 chr2L 4125252 intergenic not near genes chr2L 4125320 intergenic not near genes chr2L 4125388 intergenic not near genes chr2L_4_4125001 chr2L_4125001 RAL-377 149 chr2L 4166357 4166407 chr2L 4166460 4166510 20 103 3.0 3.5 3.2 4.8 153 chr2L 4166357 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166510 intergenic Or24a - chr2L_20_4165001 chr2L_4165001 RAL-377 150 chr2L 4181293 4181302 chr2L 4183945 4183954 Burdock 4 2652 4.0 9.5 6.8 0.5 2661 chr2L 4181293 intergenic not near genes chr2L 4182624 intergenic not near genes chr2L 4183954 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-377 151 chr2L 4184454 4184501 chr2L 4184793 4184840 4 339 7.0 19.0 13.0 0.3 386 chr2L 4184454 intergenic not near genes chr2L 4184647 intergenic not near genes chr2L 4184840 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-377 152 chr2L 4192968 4193016 chr2L 4193069 4193117 10 100 8.5 9.0 8.8 1.0 149 chr2L 4192968 intron CG3714 - chr2L 4193042 intron CG3714 - chr2L 4193117 intron CG3714 - chr2L_10_4190001 chr2L_4190001 RAL-377 153 chr2L 4229605 4229641 chr2L 4229728 4229757 5 117 6.0 6.5 6.2 0.7 152 chr2L 4229605 intergenic CR44608 + chr2L 4229681 intergenic CR44608 + chr2L 4229757 intergenic CR44608 + chr2L_5_4225001 chr2L_4225001 RAL-377 154 chr2L 4285698 4285739 chr2L 4285788 4285839 10 94 1.0 2.0 1.5 4.0 141 chr2L 4285698 intron tutl + chr2L 4285768 intron tutl + chr2L 4285839 intron tutl + chr2L_10_4285001 chr2L_4285001 RAL-377 155 chr2L 4360022 4360056 chr2L 4360200 4360234 4 178 2.0 7.5 4.8 0.7 212 chr2L 4360022 intergenic not near genes chr2L 4360128 intergenic not near genes chr2L 4360234 intergenic not near genes chr2L_4_4360001 chr2L_4360001 RAL-377 156 chr2L 4450557 4450576 chr2L 4450654 4450673 4 97 12.5 7.0 9.8 0.4 116 chr2L 4450557 intron CG15439 - chr2L 4450615 intron CG15439 - chr2L 4450673 intron CG15439 - chr2L_4_4450001 chr2L_4450001 RAL-377 157 chr2L 4487228 4487269 chr2L 4487348 4487389 9 119 8.0 8.0 8.0 1.0 161 chr2L 4487228 intron dp - chr2L 4487308 intron dp - chr2L 4487389 intron dp - chr2L_9_4485001 chr2L_4485001 RAL-377 158 chr2L 4547503 4547557 chr2L 4547603 4547655 7 96 16.5 17.0 16.8 0.4 152 chr2L 4547503 intron dp - chr2L 4547579 intron dp - chr2L 4547655 intron dp - chr2L_7_4545001 chr2L_4545001 RAL-377 159 chr2L 4601686 4601735 chr2L 4609147 4609196 mdg1 10 7460 5.5 4.0 4.8 1.7 7510 chr2L 4601686 intron dp - chr2L 4605441 intron dp - chr2L 4609196 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-377 160 chr2L 4642102 4642138 chr2L 4642203 4642249 6 109 6.0 6.0 6.0 0.9 147 chr2L 4642102 exon BG642163 + chr2L 4642176 exon BG642163 + chr2L 4642249 exon BG642163 + chr2L_6_4640001 chr2L_4640001 RAL-377 161 chr2L 4661826 4661854 chr2L 4669426 4669454 opus 5 7597 5.5 5.5 5.5 0.8 7628 chr2L 4661826 intergenic not near genes chr2L 4665640 intergenic not near genes chr2L 4669454 intergenic not near genes chr2L_5_4665001 chr2L_4665001 RAL-377 162 chr2L 4672835 4672885 chr2L 4674006 4674056 4 1171 22.0 21.0 21.5 0.2 1221 chr2L 4672835 intergenic not near genes chr2L 4673446 intergenic not near genes chr2L 4674056 intergenic not near genes chr2L_4_4670001 chr2L_4670001 RAL-377 163 chr2L 4703122 4703167 chr2L 4703221 4703265 9 98 15.5 11.0 13.2 0.6 143 chr2L 4703122 intron CG34351 + chr2L 4703194 intron CG34351 + chr2L 4703265 intron CG34351 + chr2L_9_4700001 chr2L_4700001 RAL-377 164 chr2L 4762623 4762654 chr2L 4762708 4762760 8 101 7.0 9.5 8.2 0.9 137 chr2L 4762623 intron CG15630 - chr2L 4762692 intron CG15630 - chr2L 4762760 intron CG15630 - chr2L_8_4760001 chr2L_4760001 RAL-377 165 chr2L 4780468 4780489 chr2L 4780565 4780573 5 92 12.5 6.5 9.5 0.5 105 chr2L 4780468 intron CG15630 - chr2L 4780520 intron CG15630 - chr2L 4780573 intron CG15630 - chr2L_5_4780001 chr2L_4780001 RAL-377 166 chr2L 4784056 4784063 chr2L 4784175 4784184 4 120 2.5 5.5 4.0 0.8 128 chr2L 4784056 intron CG15630 - chr2L 4784120 intron CG15630 - chr2L 4784184 intron CG15630 - chr2L_4_4780001 chr2L_4780001 RAL-377 167 chr2L 4787232 4787285 chr2L 4787332 4787371 4 96 9.5 7.5 8.5 0.4 139 chr2L 4787232 intron CG15630 - chr2L 4787302 intron CG15630 - chr2L 4787371 intron CG15630 - chr2L_4_4785001 chr2L_4785001 RAL-377 168 chr2L 4819474 4819514 chr2L 4819617 4819657 12 142 1.5 5.0 3.2 2.9 183 chr2L 4819474 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819657 intergenic not near genes chr2L_12_4815001 chr2L_4815001 RAL-377 169 chr2L 4841063 4841092 chr2L 4841149 4841187 6 93 18.0 14.0 16.0 0.4 124 chr2L 4841063 intron CG12194 + chr2L 4841125 intron CG12194 + chr2L 4841187 exon CG12194 + chr2L_6_4840001 chr2L_4840001 RAL-377 170 chr2L 4858451 4858478 chr2L 4858559 4858586 8 108 7.0 0.0 3.5 1.8 135 chr2L 4858451 intron pog + chr2L 4858518 intron pog + chr2L 4858586 intron pog + chr2L_8_4855001 chr2L_4855001 RAL-377 171 chr2L 4869450 4869483 chr2L 4869550 4869583 6 99 11.0 9.0 10.0 0.5 133 chr2L 4869450 intron pog + chr2L 4869516 intron pog + chr2L 4869583 intron pog + chr2L_6_4865001 chr2L_4865001 RAL-377 172 chr2L 4879162 4879172 chr2L 4880376 4880407 4 1219 19.5 24.5 22.0 0.2 1245 chr2L 4879162 exon Cf2 - chr2L 4879784 intron Cf2 - chr2L 4880407 exon Cf2 - chr2L_4_4875001 chr2L_4875001 RAL-377 173 chr2L 4903845 4903880 chr2L 4903972 4904007 9 127 17.5 16.5 17.0 0.5 162 chr2L 4903845 3` UTR CG3036 + chr2L 4903926 3` UTR CG2837 - chr2L 4904007 3` UTR CG2837 - chr2L_9_4900001 chr2L_4900001 RAL-377 174 chr2L 4918151 4918195 chr2L 4923244 4923288 jockey 7 5093 3.5 3.0 3.2 1.7 5137 chr2L 4918151 intron hoe1 - chr2L 4920720 intron hoe1 - chr2L 4923288 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-377 175 chr2L 4929123 4929147 chr2L 4929228 4929252 6 104 1.5 7.0 4.2 1.2 129 chr2L 4929123 intron hoe1 - chr2L 4929188 intron hoe1 - chr2L 4929252 intron hoe1 - chr2L_6_4925001 chr2L_4925001 RAL-377 176 chr2L 4953496 4953535 chr2L 4953757 4953796 pogo 9 261 5.0 5.0 5.0 1.5 300 chr2L 4953496 intergenic Jon25Bii - chr2L 4953646 intergenic not near genes chr2L 4953796 intergenic Jon25Bi - chr2L_9_4950001 chr2L_4950001 RAL-377 177 chr2L 4972459 4972502 chr2L 4972990 4973033 9 531 7.0 8.0 7.5 1.1 574 chr2L 4972459 intron,exon l(2)05714 -,CG14043 + chr2L 4972746 intron,exon l(2)05714 -,CG14043 + chr2L 4973033 intron,exon l(2)05714 -,CG14043 + chr2L_9_4970001 chr2L_4970001 RAL-377 178 chr2L 4996071 4996116 chr2L 4996168 4996213 16 97 6.5 6.0 6.2 2.2 142 chr2L 4996071 intron Rtnl1 - chr2L 4996142 intron Rtnl1 - chr2L 4996213 intron Rtnl1 - chr2L_16_4995001 chr2L_4995001 RAL-377 179 chr2L 5063335 5063369 chr2L 5063452 5063476 4 112 3.5 1.5 2.5 1.1 141 chr2L 5063335 intron,3` UTR qtc +,CR43820 - chr2L 5063406 intron,3` UTR qtc +,CR43820 - chr2L 5063476 intron qtc + chr2L_4_5060001 chr2L_5060001 RAL-377 180 chr2L 5082017 5082048 chr2L 5082118 5082149 6 99 9.5 10.0 9.8 0.6 132 chr2L 5082017 intron pgant5 - chr2L 5082083 intron pgant5 - chr2L 5082149 intron pgant5 - chr2L_6_5080001 chr2L_5080001 RAL-377 181 chr2L 5117277 5117322 chr2L 5117379 5117424 12 101 15.0 14.5 14.8 0.8 147 chr2L 5117277 intron Msp300 + chr2L 5117350 intron Msp300 + chr2L 5117424 intron Msp300 + chr2L_12_5115001 chr2L_5115001 RAL-377 182 chr2L 5147716 5147754 chr2L 5147968 5147984 8 247 12.5 21.5 17.0 0.4 268 chr2L 5147716 intron Msp300 + chr2L 5147850 intron Msp300 + chr2L 5147984 intron Msp300 + chr2L_8_5145001 chr2L_5145001 RAL-377 183 chr2L 5149556 5149598 chr2L 5149657 5149698 8 101 4.5 8.5 6.5 1.1 142 chr2L 5149556 intron Msp300 + chr2L 5149627 intron Msp300 + chr2L 5149698 intron Msp300 + chr2L_8_5145001 chr2L_5145001 RAL-377 184 chr2L 5263726 5263741 chr2L 5263828 5263843 6 102 15.0 19.0 17.0 0.3 117 chr2L 5263726 intron tkv - chr2L 5263784 intron tkv - chr2L 5263843 intron tkv - chr2L_6_5260001 chr2L_5260001 RAL-377 185 chr2L 5278609 5278658 chr2L 5278803 5278852 13 194 10.5 13.0 11.8 1.0 243 chr2L 5278609 intergenic Bsg25D -,Bub1 + chr2L 5278730 intergenic Bsg25D -,Bub1 + chr2L 5278852 intergenic Bub1 +,Bsg25D - chr2L_13_5275001 chr2L_5275001 RAL-377 186 chr2L 5284156 5284206 chr2L 5284259 5284309 7 101 14.5 10.0 12.2 0.5 153 chr2L 5284156 intergenic not near genes chr2L 5284232 intergenic not near genes chr2L 5284309 intergenic not near genes chr2L_7_5280001 chr2L_5280001 RAL-377 187 chr2L 5296932 5296980 chr2L 5297041 5297090 4 104 5.0 6.0 5.5 0.6 158 chr2L 5296932 intron vri + chr2L 5297011 intron vri + chr2L 5297090 intron vri + chr2L_4_5295001 chr2L_5295001 RAL-377 188 chr2L 5342796 5342800 chr2L 5345158 5345163 Doc 4 2362 0.5 3.5 2.0 1.3 2367 chr2L 5342796 intergenic not near genes chr2L 5343980 intergenic not near genes chr2L 5345163 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-377 189 chr2L 5378425 5378450 chr2L 5378524 5378549 5 99 15.0 15.0 15.0 0.3 124 chr2L 5378425 intergenic not near genes chr2L 5378487 intergenic not near genes chr2L 5378549 intergenic not near genes chr2L_5_5375001 chr2L_5375001 RAL-377 190 chr2L 5433850 5433879 chr2L 5433950 5433979 8 99 11.0 12.0 11.5 0.6 129 chr2L 5433850 3` UTR CR43715 - chr2L 5433914 3` UTR CR43715 - chr2L 5433979 3` UTR CR43715 - chr2L_8_5430001 chr2L_5430001 RAL-377 191 chr2L 5460308 5460355 chr2L 5460410 5460457 8 100 5.5 7.5 6.5 1.1 149 chr2L 5460308 intergenic not near genes chr2L 5460382 intergenic not near genes chr2L 5460457 intergenic not near genes chr2L_8_5460001 chr2L_5460001 RAL-377 192 chr2L 5475129 5475155 chr2L 5475254 5475279 4 125 8.0 6.0 7.0 0.5 150 chr2L 5475129 intergenic not near genes chr2L 5475204 intergenic not near genes chr2L 5475279 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-377 193 chr2L 5485031 5485064 chr2L 5485131 5485164 5 100 10.0 7.0 8.5 0.5 133 chr2L 5485031 intergenic not near genes chr2L 5485098 intergenic not near genes chr2L 5485164 intergenic not near genes chr2L_5_5485001 chr2L_5485001 RAL-377 194 chr2L 5486261 5486276 chr2L 5486370 5486385 4 108 1.0 2.0 1.5 1.6 124 chr2L 5486261 intergenic not near genes chr2L 5486323 intergenic not near genes chr2L 5486385 intergenic not near genes chr2L_4_5485001 chr2L_5485001 RAL-377 195 chr2L 5500039 5500073 chr2L 5500144 5500179 7 105 15.5 8.0 11.8 0.5 140 chr2L 5500039 intergenic not near genes chr2L 5500109 intergenic not near genes chr2L 5500179 intergenic not near genes chr2L_7_5500001 chr2L_5500001 RAL-377 196 chr2L 5511307 5511347 chr2L 5511410 5511450 7 102 5.5 6.0 5.8 1.0 143 chr2L 5511307 intergenic not near genes chr2L 5511378 intergenic not near genes chr2L 5511450 intergenic not near genes chr2L_7_5510001 chr2L_5510001 RAL-377 197 chr2L 5582313 5582345 chr2L 5582422 5582449 13 108 9.5 8.0 8.8 1.3 136 chr2L 5582313 intergenic not near genes chr2L 5582381 intergenic not near genes chr2L 5582449 intergenic not near genes chr2L_13_5580001 chr2L_5580001 RAL-377 198 chr2L 5594339 5594354 chr2L 5594446 5594461 6 107 4.0 4.5 4.2 1.2 122 chr2L 5594339 intergenic not near genes chr2L 5594400 intergenic not near genes chr2L 5594461 intergenic not near genes chr2L_6_5590001 chr2L_5590001 RAL-377 199 chr2L 5624539 5624583 chr2L 5624796 5624840 12 254 15.5 16.0 15.8 0.7 301 chr2L 5624539 intergenic not near genes chr2L 5624690 intergenic not near genes chr2L 5624840 intergenic not near genes chr2L_12_5620001 chr2L_5620001 RAL-377 200 chr2L 5666297 5666323 chr2L 5666407 5666433 7 109 1.0 5.5 3.2 1.7 136 chr2L 5666297 intron Hsp60C + chr2L 5666365 intron Hsp60C + chr2L 5666433 intron Hsp60C + chr2L_7_5665001 chr2L_5665001 RAL-377 201 chr2L 5677137 5677222 chr2L 5677235 5677340 8 112 4.5 5.0 4.8 1.4 203 chr2L 5677137 intergenic not near genes chr2L 5677238 intergenic not near genes chr2L 5677340 intergenic not near genes chr2L_8_5675001 chr2L_5675001 RAL-377 202 chr2L 5709035 5709084 chr2L 5709214 5709263 5 179 5.5 8.0 6.8 0.6 228 chr2L 5709035 intron CG7236 + chr2L 5709149 intron CG7236 + chr2L 5709263 intron CG7236 + chr2L_5_5705001 chr2L_5705001 RAL-377 203 chr2L 5805200 5805234 chr2L 5805339 5805349 4 131 1.5 7.0 4.2 0.8 149 chr2L 5805200 intergenic CG11034 + chr2L 5805274 intergenic CG11034 + chr2L 5805349 intergenic CG11034 + chr2L_4_5805001 chr2L_5805001 RAL-377 204 chr2L 5805934 5805987 chr2L 5806171 5806224 8 237 11.5 16.5 14.0 0.5 290 chr2L 5805934 intron CG11034 + chr2L 5806079 intron CG11034 + chr2L 5806224 intron CG11034 + chr2L_8_5805001 chr2L_5805001 RAL-377 205 chr2L 5814689 5814712 chr2L 5814792 5814815 6 103 8.5 10.5 9.5 0.6 126 chr2L 5814689 intergenic not near genes chr2L 5814752 intergenic not near genes chr2L 5814815 intergenic not near genes chr2L_6_5810001 chr2L_5810001 RAL-377 206 chr2L 5819659 5819705 chr2L 5819762 5819797 12 101 7.5 7.0 7.2 1.5 138 chr2L 5819659 intergenic not near genes chr2L 5819728 intergenic not near genes chr2L 5819797 intergenic not near genes chr2L_12_5815001 chr2L_5815001 RAL-377 207 chr2L 5827693 5827741 chr2L 5836721 5836763 roo 14 9024 4.0 3.0 3.5 3.1 9070 chr2L 5827693 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836763 intron TrissinR + chr2L_14_5830001 chr2L_5830001 RAL-377 208 chr2L 5838301 5838348 chr2L 5839870 5839918 14 1569 8.5 13.5 11.0 1.2 1617 chr2L 5838301 intron TrissinR + chr2L 5839110 intron TrissinR + chr2L 5839918 intron TrissinR + chr2L_14_5835001 chr2L_5835001 RAL-377 209 chr2L 5839117 5839150 chr2L 5839382 5839412 6 265 2.0 2.0 2.0 2.0 295 chr2L 5839117 intron TrissinR + chr2L 5839264 intron TrissinR + chr2L 5839412 intron TrissinR + chr2L_6_5835001 chr2L_5835001 RAL-377 210 chr2L 5842603 5842652 chr2L 5843032 5843081 10 426 15.5 11.5 13.5 0.7 478 chr2L 5842603 intron TrissinR + chr2L 5842842 intron TrissinR + chr2L 5843081 intron TrissinR + chr2L_10_5840001 chr2L_5840001 RAL-377 211 chr2L 5878743 5878783 chr2L 5878829 5878879 5 82 16.5 11.5 14.0 0.3 136 chr2L 5878743 intron rau - chr2L 5878811 intron rau - chr2L 5878879 intron rau - chr2L_5_5875001 chr2L_5875001 RAL-377 212 chr2L 5904450 5904458 chr2L 5904550 5904558 4 100 7.5 0.0 3.8 0.8 108 chr2L 5904450 exon CG9021 - chr2L 5904504 intron CG9021 - chr2L 5904558 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-377 213 chr2L 5926487 5926520 chr2L 5926844 5926877 6 357 13.5 5.0 9.2 0.6 390 chr2L 5926487 intron dsf + chr2L 5926682 intron dsf + chr2L 5926877 intron dsf + chr2L_6_5925001 chr2L_5925001 RAL-377 214 chr2L 5942009 5942055 chr2L 5942120 5942141 7 100 12.5 11.0 11.8 0.5 132 chr2L 5942009 5` UTR CR45289 + chr2L 5942075 5` UTR CR45289 + chr2L 5942141 5` UTR CR45289 + chr2L_7_5940001 chr2L_5940001 RAL-377 215 chr2L 5976926 5977006 chr2L 5977032 5977122 12 109 1.0 1.0 1.0 6.0 196 chr2L 5976926 intron chic - chr2L 5977024 intron chic - chr2L 5977122 intron chic - chr2L_12_5975001 chr2L_5975001 RAL-377 216 chr2L 5989013 5989063 chr2L 5989109 5989119 12 96 5.0 0.0 2.5 3.4 106 chr2L 5989013 intergenic ifc +,lid - chr2L 5989066 intergenic ifc +,lid - chr2L 5989119 intergenic ifc +,lid - chr2L_12_5985001 chr2L_5985001 RAL-377 217 chr2L 5993308 5993360 chr2L 5993419 5993471 6 111 11.0 10.0 10.5 0.5 163 chr2L 5993308 exon lid - chr2L 5993390 intron lid - chr2L 5993471 exon lid - chr2L_6_5990001 chr2L_5990001 RAL-377 218 chr2L 6018208 6018329 chr2L 6018307 6018472 17 114 8.0 7.5 7.8 1.9 264 chr2L 6018208 intron H2.0 - chr2L 6018340 intron H2.0 - chr2L 6018472 intron H2.0 - chr2L_17_6015001 chr2L_6015001 RAL-377 219 chr2L 6096563 6096578 chr2L 6096681 6096691 6 117 1.0 11.5 6.2 0.8 128 chr2L 6096563 intergenic Kr-h1 +,CG45075 +,CG9175 - chr2L 6096627 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L 6096691 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L_6_6095001 chr2L_6095001 RAL-377 220 chr2L 6130750 6130795 chr2L 6130855 6130899 5 105 12.0 7.5 9.8 0.5 149 chr2L 6130750 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130824 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130899 intergenic CG9222 +,CG42730 -,tectonic - chr2L_5_6130001 chr2L_6130001 RAL-377 221 chr2L 6133591 6133609 chr2L 6133668 6133721 4 100 5.5 6.0 5.8 0.6 130 chr2L 6133591 3` UTR CR45719 - chr2L 6133656 3` UTR CR45719 - chr2L 6133721 intergenic CR45719 - chr2L_4_6130001 chr2L_6130001 RAL-377 222 chr2L 6153676 6153700 chr2L 6153788 6153816 6 115 17.0 12.0 14.5 0.4 140 chr2L 6153676 3` UTR Muc26B + chr2L 6153746 intergenic Muc26B +,CG31639 - chr2L 6153816 intergenic CG31639 -,Muc26B + chr2L_6_6150001 chr2L_6150001 RAL-377 223 chr2L 6242964 6242985 chr2L 6243082 6243103 6 118 5.0 5.0 5.0 1.0 139 chr2L 6242964 intergenic not near genes chr2L 6243034 intergenic not near genes chr2L 6243103 intergenic not near genes chr2L_6_6240001 chr2L_6240001 RAL-377 224 chr2L 6279625 6279653 chr2L 6279721 6279752 INE-1 5 98 14.5 11.0 12.8 0.4 127 chr2L 6279625 intron Ddr + chr2L 6279688 intron Ddr + chr2L 6279752 intron Ddr + chr2L_5_6275001 chr2L_6275001 RAL-377 225 chr2L 6283932 6283975 chr2L 6284063 6284106 6 130 0.0 3.5 1.8 2.1 174 chr2L 6283932 intron Ddr + chr2L 6284019 intron Ddr + chr2L 6284106 intron Ddr + chr2L_6_6280001 chr2L_6280001 RAL-377 226 chr2L 6318715 6318755 chr2L 6318889 6318929 8 172 17.5 17.5 17.5 0.4 214 chr2L 6318715 intron Ddr + chr2L 6318822 intron Ddr + chr2L 6318929 intron Ddr + chr2L_8_6315001 chr2L_6315001 RAL-377 227 chr2L 6343666 6343694 chr2L 6343960 6343988 9 295 26.0 22.0 24.0 0.4 322 chr2L 6343666 intron Cpr + chr2L 6343827 intron Cpr + chr2L 6343988 intron Cpr + chr2L_9_6340001 chr2L_6340001 RAL-377 228 chr2L 6349061 6349072 chr2L 6349159 6349166 4 97 8.0 6.5 7.2 0.5 105 chr2L 6349061 intergenic CG9498 - chr2L 6349114 intergenic CG9498 - chr2L 6349166 intergenic CG9498 - chr2L_4_6345001 chr2L_6345001 RAL-377 229 chr2L 6363129 6363174 chr2L 6366071 6366116 Burdock 12 2940 7.0 5.0 6.0 1.7 2987 chr2L 6363129 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366116 intergenic not near genes chr2L_12_6360001 chr2L_6360001 RAL-377 230 chr2L 6426836 6426886 chr2L 6445116 6445166 roo 18 18279 7.0 7.5 7.2 2.2 18330 chr2L 6426836 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445166 exon CG9527 - chr2L_18_6435001 chr2L_6435001 RAL-377 231 chr2L 6504599 6504614 chr2L 6504661 6504686 4 84 6.0 5.0 5.5 0.6 87 chr2L 6504599 intron CG31637 + chr2L 6504642 intron CG31637 + chr2L 6504686 intron CG31637 + chr2L_4_6500001 chr2L_6500001 RAL-377 232 chr2L 6537122 6537157 chr2L 6537220 6537255 17 98 4.0 0.5 2.2 5.3 133 chr2L 6537122 intron eya - chr2L 6537188 intron eya - chr2L 6537255 intron eya - chr2L_17_6535001 chr2L_6535001 RAL-377 233 chr2L 6544361 6544393 chr2L 6544473 6544505 9 112 0.5 3.0 1.8 3.2 144 chr2L 6544361 intron eya - chr2L 6544433 intron eya - chr2L 6544505 intron eya - chr2L_9_6540001 chr2L_6540001 RAL-377 234 chr2L 6564826 6564882 chr2L 6564939 6564994 7 113 12.5 10.5 11.5 0.6 168 chr2L 6564826 3` UTR CG13766 - chr2L 6564910 3` UTR CG13766 - chr2L 6564994 3` UTR CG13766 - chr2L_7_6560001 chr2L_6560001 RAL-377 235 chr2L 6615134 6615181 chr2L 6615234 6615281 12 100 12.5 13.5 13.0 0.9 147 chr2L 6615134 intron CG11050 + chr2L 6615208 intron CG11050 + chr2L 6615281 intron CG11050 + chr2L_12_6615001 chr2L_6615001 RAL-377 236 chr2L 6626868 6626895 chr2L 6626973 6627000 7 103 14.0 11.5 12.8 0.5 132 chr2L 6626868 intron Oatp26F - chr2L 6626934 intron Oatp26F - chr2L 6627000 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-377 237 chr2L 6640894 6640939 chr2L 6641004 6641034 5 110 11.0 10.5 10.8 0.4 140 chr2L 6640894 exon CG31635 - chr2L 6640964 intron CG31635 - chr2L 6641034 intron CG31635 - chr2L_5_6640001 chr2L_6640001 RAL-377 238 chr2L 6655516 6655534 chr2L 6655891 6655910 8 378 1.0 3.5 2.2 2.5 394 chr2L 6655516 exon CG31633 - chr2L 6655713 exon CG31633 - chr2L 6655910 exon CG31633 - chr2L_8_6655001 chr2L_6655001 RAL-377 239 chr2L 6771580 6771626 chr2L 6771697 6771722 4 112 0.0 0.5 0.2 3.3 142 chr2L 6771580 intron CG11321 - chr2L 6771651 intron CG11321 - chr2L 6771722 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-377 240 chr2L 6797625 6797649 chr2L 6798003 6798027 6 378 6.5 25.5 16.0 0.4 402 chr2L 6797625 intron nrv2 - chr2L 6797826 intron nrv2 - chr2L 6798027 intron nrv2 - chr2L_6_6795001 chr2L_6795001 RAL-377 241 chr2L 6799522 6799572 chr2L 6799629 6799680 7 106 12.5 14.0 13.2 0.5 158 chr2L 6799522 5` UTR CR43610 + chr2L 6799601 intergenic CR43610 +,CG17376 - chr2L 6799680 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-377 242 chr2L 6839731 6839759 chr2L 6839830 6839872 6 111 9.0 12.5 10.8 0.5 141 chr2L 6839731 intergenic not near genes chr2L 6839802 intergenic not near genes chr2L 6839872 intergenic not near genes chr2L_6_6835001 chr2L_6835001 RAL-377 243 chr2L 6850385 6850426 chr2L 6850511 6850552 12 126 12.5 9.5 11.0 1.0 167 chr2L 6850385 intergenic not near genes chr2L 6850468 intergenic not near genes chr2L 6850552 intergenic not near genes chr2L_12_6850001 chr2L_6850001 RAL-377 244 chr2L 6876772 6876798 chr2L 6882971 6883003 diver 4 6206 5.5 5.5 5.5 0.6 6231 chr2L 6876772 intron Nlg2 + chr2L 6879888 intron Nlg2 + chr2L 6883003 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-377 245 chr2L 6883731 6883774 chr2L 6883837 6883850 7 101 9.0 10.0 9.5 0.7 119 chr2L 6883731 intron Nlg2 + chr2L 6883790 intron Nlg2 + chr2L 6883850 intron Nlg2 + chr2L_7_6880001 chr2L_6880001 RAL-377 246 chr2L 6887477 6887525 chr2L 6887647 6887697 4 170 4.5 0.0 2.2 1.2 220 chr2L 6887477 intron Nlg2 + chr2L 6887587 intron Nlg2 + chr2L 6887697 intron Nlg2 + chr2L_4_6885001 chr2L_6885001 RAL-377 247 chr2L 7005222 7005252 chr2L 7005333 7005368 9 115 11.5 10.0 10.8 0.8 146 chr2L 7005222 intron uif - chr2L 7005295 intron uif - chr2L 7005368 intron uif - chr2L_9_7005001 chr2L_7005001 RAL-377 248 chr2L 7030059 7030108 chr2L 7030160 7030197 8 99 14.0 16.0 15.0 0.5 138 chr2L 7030059 intergenic Rab30 - chr2L 7030128 intergenic Rab30 - chr2L 7030197 intergenic Rab30 - chr2L_8_7030001 chr2L_7030001 RAL-377 249 chr2L 7041253 7041269 chr2L 7041362 7041378 5 109 0.0 1.5 0.8 2.8 125 chr2L 7041253 intron milt + chr2L 7041316 intron milt + chr2L 7041378 intron milt + chr2L_5_7040001 chr2L_7040001 RAL-377 250 chr2L 7043513 7043530 chr2L 7043667 7043684 8 154 0.0 1.5 0.8 4.4 171 chr2L 7043513 intron milt + chr2L 7043598 intron milt + chr2L 7043684 intron milt + chr2L_8_7040001 chr2L_7040001 RAL-377 251 chr2L 7111736 7111769 chr2L 7111841 7111874 4 105 1.0 0.0 0.5 2.7 138 chr2L 7111736 intron Pvf3 - chr2L 7111805 intron Pvf3 - chr2L 7111874 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-377 252 chr2L 7125771 7125810 chr2L 7125907 7125946 18 136 5.0 3.0 4.0 3.6 175 chr2L 7125771 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125946 intron Pvf3 - chr2L_18_7125001 chr2L_7125001 RAL-377 253 chr2L 7126846 7126871 chr2L 7126945 7126970 6 99 16.0 12.0 14.0 0.4 124 chr2L 7126846 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126970 intron Pvf3 - chr2L_6_7125001 chr2L_7125001 RAL-377 254 chr2L 7143145 7143186 chr2L 7143246 7143287 9 101 0.5 5.5 3.0 2.2 142 chr2L 7143145 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143216 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143287 intron,5` UTR Pvf3 -,CR44612 + chr2L_9_7140001 chr2L_7140001 RAL-377 255 chr2L 7164555 7164577 chr2L 7164693 7164715 9 136 11.5 11.0 11.2 0.7 160 chr2L 7164555 intergenic not near genes chr2L 7164635 intergenic not near genes chr2L 7164715 intergenic not near genes chr2L_9_7160001 chr2L_7160001 RAL-377 256 chr2L 7197976 7198017 chr2L 7198075 7198116 6 99 3.5 4.0 3.8 1.2 140 chr2L 7197976 intron CG4502 - chr2L 7198046 intron CG4502 - chr2L 7198116 intron CG4502 - chr2L_6_7195001 chr2L_7195001 RAL-377 257 chr2L 7335188 7335211 chr2L 7335300 7335328 7 116 11.5 11.5 11.5 0.6 140 chr2L 7335188 intron Wnt6 + chr2L 7335258 intron Wnt6 + chr2L 7335328 intron Wnt6 + chr2L_7_7335001 chr2L_7335001 RAL-377 258 chr2L 7343308 7343356 chr2L 7350444 7350492 roo 7 7134 3.0 3.5 3.2 1.7 7184 chr2L 7343308 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350492 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-377 259 chr2L 7384314 7384334 chr2L 7384415 7384435 5 100 2.0 2.0 2.0 1.7 121 chr2L 7384314 3` UTR ninaC + chr2L 7384374 intergenic ninaC +,CG5149 - chr2L 7384435 intergenic CG5149 -,ninaC + chr2L_5_7380001 chr2L_7380001 RAL-377 260 chr2L 7399294 7399335 chr2L 7399687 7399727 4 392 11.5 4.5 8.0 0.4 433 chr2L 7399294 intergenic not near genes chr2L 7399510 intergenic not near genes chr2L 7399727 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-377 261 chr2L 7436190 7436221 chr2L 7436304 7436335 10 114 11.5 9.5 10.5 0.9 145 chr2L 7436190 intergenic not near genes chr2L 7436262 intergenic not near genes chr2L 7436335 intergenic not near genes chr2L_10_7435001 chr2L_7435001 RAL-377 262 chr2L 7489590 7489604 chr2L 7489716 7489730 4 126 19.5 17.0 18.2 0.2 140 chr2L 7489590 intron Ziz - chr2L 7489660 intron Ziz - chr2L 7489730 intron Ziz - chr2L_4_7485001 chr2L_7485001 RAL-377 263 chr2L 7493390 7493421 chr2L 7493494 7493527 5 105 3.5 10.5 7.0 0.6 137 chr2L 7493390 intron Ziz - chr2L 7493458 intron Ziz - chr2L 7493527 intron Ziz - chr2L_5_7490001 chr2L_7490001 RAL-377 264 chr2L 7513758 7513789 chr2L 7513855 7513886 5 97 11.0 9.0 10.0 0.5 128 chr2L 7513758 intron RapGAP1 - chr2L 7513822 intron RapGAP1 - chr2L 7513886 intron RapGAP1 - chr2L_5_7510001 chr2L_7510001 RAL-377 265 chr2L 7579177 7579208 chr2L 7579387 7579419 BS 8 211 4.5 0.5 2.5 2.3 242 chr2L 7579177 intergenic RapGAP1 - chr2L 7579298 intergenic RapGAP1 - chr2L 7579419 intergenic RapGAP1 - chr2L_8_7575001 chr2L_7575001 RAL-377 266 chr2L 7579870 7579918 chr2L 7579972 7580013 13 101 2.0 4.0 3.0 3.2 143 chr2L 7579870 intergenic not near genes chr2L 7579942 intergenic not near genes chr2L 7580013 intergenic not near genes chr2L_13_7575001 chr2L_7575001 RAL-377 267 chr2L 7640401 7640420 chr2L 7640502 7640521 7 102 1.5 0.5 1.0 3.5 120 chr2L 7640401 intergenic not near genes chr2L 7640461 intergenic not near genes chr2L 7640521 intergenic not near genes chr2L_7_7640001 chr2L_7640001 RAL-377 268 chr2L 7702879 7702918 chr2L 7703067 7703101 9 186 4.5 10.0 7.2 1.1 222 chr2L 7702879 5` UTR Tep3 + chr2L 7702990 5` UTR Tep3 + chr2L 7703101 5` UTR Tep3 + chr2L_9_7700001 chr2L_7700001 RAL-377 269 chr2L 7769795 7769823 chr2L 7769894 7769922 8 98 15.5 14.0 14.8 0.5 127 chr2L 7769795 intron CG7191 + chr2L 7769858 intron CG7191 + chr2L 7769922 intron CG7191 + chr2L_8_7765001 chr2L_7765001 RAL-377 270 chr2L 7867548 7867594 chr2L 7867662 7867701 10 113 9.0 10.0 9.5 1.0 153 chr2L 7867548 intron Proc - chr2L 7867624 intron Proc - chr2L 7867701 intron Proc - chr2L_10_7865001 chr2L_7865001 RAL-377 271 chr2L 7921093 7921118 chr2L 7921190 7921225 4 92 4.5 7.0 5.8 0.6 132 chr2L 7921093 intron Snoo - chr2L 7921159 intron Snoo - chr2L 7921225 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-377 272 chr2L 7922724 7922775 chr2L 7922825 7922871 9 100 8.5 9.5 9.0 0.9 147 chr2L 7922724 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922871 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-377 273 chr2L 7959029 7959072 chr2L 7960460 7960504 pogo 5 1431 10.0 9.5 9.8 0.5 1475 chr2L 7959029 intron Snoo - chr2L 7959766 intron Snoo - chr2L 7960504 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-377 274 chr2L 8003035 8003063 chr2L 8003137 8003160 15 101 2.0 11.5 6.8 1.9 125 chr2L 8003035 intron Wwox - chr2L 8003098 intron Wwox - chr2L 8003160 intron Wwox - chr2L_15_8000001 chr2L_8000001 RAL-377 275 chr2L 8013601 8013613 chr2L 8018820 8018837 copia 4 5223 12.0 0.5 6.2 0.6 5236 chr2L 8013601 intron Tg + chr2L 8016219 intron Tg + chr2L 8018837 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-377 276 chr2L 8018815 8018837 chr2L 8023619 8023641 Doc 13 4804 0.0 12.5 6.2 1.8 4826 chr2L 8018815 intron Tg + chr2L 8021228 intron Tg + chr2L 8023641 intron Tg + chr2L_13_8020001 chr2L_8020001 RAL-377 277 chr2L 8032616 8032624 chr2L 8032727 8032729 4 110 3.0 0.0 1.5 1.6 113 chr2L 8032616 intron,exon CG7367 -,Cka + chr2L 8032672 intron,intron CG7367 -,Cka + chr2L 8032729 intron,intron CG7367 -,Cka + chr2L_4_8030001 chr2L_8030001 RAL-377 278 chr2L 8141923 8141953 chr2L 8142026 8142056 6 103 15.5 10.5 13.0 0.4 133 chr2L 8141923 intron CG8552 - chr2L 8141990 intron CG8552 - chr2L 8142056 intron CG8552 - chr2L_6_8140001 chr2L_8140001 RAL-377 279 chr2L 8167140 8167159 chr2L 8167251 8167270 5 110 7.0 8.0 7.5 0.6 130 chr2L 8167140 intron Piezo + chr2L 8167205 intron Piezo + chr2L 8167270 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-377 280 chr2L 8167714 8167739 chr2L 8167813 8167833 5 98 7.0 8.0 7.5 0.6 119 chr2L 8167714 intron Piezo + chr2L 8167774 intron Piezo + chr2L 8167833 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-377 281 chr2L 8171278 8171300 chr2L 8171375 8171401 5 100 0.0 8.5 4.2 1.0 123 chr2L 8171278 intron Piezo + chr2L 8171340 intron Piezo + chr2L 8171401 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-377 282 chr2L 8271619 8271655 chr2L 8271712 8271750 11 96 2.0 4.5 3.2 2.6 131 chr2L 8271619 intron Btk29A - chr2L 8271684 intron Btk29A - chr2L 8271750 intron Btk29A - chr2L_11_8270001 chr2L_8270001 RAL-377 283 chr2L 8284909 8284948 chr2L 8285008 8285048 6 100 8.0 11.0 9.5 0.6 139 chr2L 8284909 intron Btk29A - chr2L 8284978 intron Btk29A - chr2L 8285048 intron Btk29A - chr2L_6_8280001 chr2L_8280001 RAL-377 284 chr2L 8288681 8288705 chr2L 8288790 8288821 4 109 14.5 18.5 16.5 0.2 140 chr2L 8288681 intron Btk29A - chr2L 8288751 intron Btk29A - chr2L 8288821 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-377 285 chr2L 8334239 8334484 chr2L 8334345 8334583 20 102 10.5 5.0 7.8 2.3 344 chr2L 8334239 intergenic not near genes chr2L 8334411 intergenic not near genes chr2L 8334583 intergenic not near genes chr2L_20_8330001 chr2L_8330001 RAL-377 286 chr2L 8336935 8336965 chr2L 8337019 8337047 4 88 5.5 8.0 6.8 0.5 112 chr2L 8336935 intergenic not near genes chr2L 8336991 intergenic not near genes chr2L 8337047 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-377 287 chr2L 8341828 8341875 chr2L 8341964 8342011 13 136 12.0 13.5 12.8 0.9 183 chr2L 8341828 3` UTR CG14274 + chr2L 8341920 3` UTR CG14274 + chr2L 8342011 3` UTR CG14274 + chr2L_13_8340001 chr2L_8340001 RAL-377 288 chr2L 8351538 8351584 chr2L 8351635 8351681 9 96 5.0 3.5 4.2 1.7 143 chr2L 8351538 intergenic CG7778 + chr2L 8351610 intergenic CG7778 + chr2L 8351681 intergenic not near genes chr2L_9_8350001 chr2L_8350001 RAL-377 289 chr2L 8417936 8417971 chr2L 8418049 8418084 13 113 17.0 20.5 18.8 0.7 148 chr2L 8417936 intron Akap200 + chr2L 8418010 intron Akap200 + chr2L 8418084 intron Akap200 + chr2L_13_8415001 chr2L_8415001 RAL-377 290 chr2L 8452401 8452433 chr2L 8461592 8461624 roo 13 9191 9.5 9.0 9.2 1.3 9223 chr2L 8452401 intron fu12 - chr2L 8457012 intron fu12 - chr2L 8461624 intron fu12 - chr2L_13_8455001 chr2L_8455001 RAL-377 291 chr2L 8480187 8480206 chr2L 8480699 8480718 7 511 13.0 15.5 14.2 0.5 531 chr2L 8480187 intron d + chr2L 8480452 intron d + chr2L 8480718 intron d + chr2L_7_8480001 chr2L_8480001 RAL-377 292 chr2L 8498190 8498221 chr2L 8498291 8498322 9 101 6.0 3.0 4.5 1.6 132 chr2L 8498190 intron Dh31 - chr2L 8498256 intron Dh31 - chr2L 8498322 intron Dh31 - chr2L_9_8495001 chr2L_8495001 RAL-377 293 chr2L 8505134 8505176 chr2L 8505254 8505293 4 119 9.5 11.0 10.2 0.4 159 chr2L 8505134 intron Dh31 - chr2L 8505214 intron Dh31 - chr2L 8505293 intron Dh31 - chr2L_4_8505001 chr2L_8505001 RAL-377 294 chr2L 8508815 8508849 chr2L 8509051 8509085 8 236 3.0 0.0 1.5 3.2 270 chr2L 8508815 intergenic CG13096 - chr2L 8508950 intergenic CG13096 - chr2L 8509085 3` UTR CG13096 - chr2L_8_8505001 chr2L_8505001 RAL-377 295 chr2L 8510120 8510172 chr2L 8510229 8510275 6 108 6.0 7.0 6.5 0.8 155 chr2L 8510120 exon CG13096 - chr2L 8510198 intron CG13096 - chr2L 8510275 intron CG13096 - chr2L_6_8510001 chr2L_8510001 RAL-377 296 chr2L 8521732 8521759 chr2L 8521837 8521863 5 103 13.0 10.0 11.5 0.4 131 chr2L 8521732 3` UTR CG13091 + chr2L 8521798 3` UTR CG13091 + chr2L 8521863 intergenic CG13091 +,Acer + chr2L_5_8520001 chr2L_8520001 RAL-377 297 chr2L 8551417 8551430 chr2L 8551652 8551665 4 235 15.5 3.0 9.2 0.4 248 chr2L 8551417 intron Sema-1a + chr2L 8551541 intron Sema-1a + chr2L 8551665 intron Sema-1a + chr2L_4_8550001 chr2L_8550001 RAL-377 298 chr2L 8594445 8594493 chr2L 8601519 8601566 297 7 7074 4.0 0.0 2.0 2.3 7121 chr2L 8594445 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598006 intron Sema-1a + chr2L 8601566 intron Sema-1a + chr2L_7_8595001 chr2L_8595001 RAL-377 299 chr2L 8605946 8605985 chr2L 8606042 8606081 4 96 12.5 8.0 10.2 0.4 135 chr2L 8605946 intron Sema-1a + chr2L 8606014 intron Sema-1a + chr2L 8606081 intron Sema-1a + chr2L_4_8605001 chr2L_8605001 RAL-377 300 chr2L 8612836 8612863 chr2L 8612933 8612960 8 97 8.0 9.0 8.5 0.8 124 chr2L 8612836 intron Sema-1a + chr2L 8612898 intron Sema-1a + chr2L 8612960 intron Sema-1a + chr2L_8_8610001 chr2L_8610001 RAL-377 301 chr2L 8637394 8637434 chr2L 8637504 8637551 5 117 7.0 10.0 8.5 0.5 157 chr2L 8637394 intron Sema-1a + chr2L 8637472 intron Sema-1a + chr2L 8637551 intron Sema-1a + chr2L_5_8635001 chr2L_8635001 RAL-377 302 chr2L 8649926 8649963 chr2L 8650035 8650067 8 105 12.0 13.0 12.5 0.6 141 chr2L 8649926 intron Sema-1a + chr2L 8649996 intron Sema-1a + chr2L 8650067 intron Sema-1a + chr2L_8_8645001 chr2L_8645001 RAL-377 303 chr2L 8687070 8687094 chr2L 8687194 8687218 4 124 8.5 10.0 9.2 0.4 148 chr2L 8687070 intergenic Trs23 +,Hnf4 - chr2L 8687144 intergenic Hnf4 -,Trs23 + chr2L 8687218 intergenic Hnf4 -,Trs23 + chr2L_4_8685001 chr2L_8685001 RAL-377 304 chr2L 8695812 8695845 chr2L 8695985 8696018 6 173 11.0 8.0 9.5 0.6 206 chr2L 8695812 intron Hnf4 - chr2L 8695915 intron Hnf4 - chr2L 8696018 intron Hnf4 - chr2L_6_8695001 chr2L_8695001 RAL-377 305 chr2L 8723099 8723146 chr2L 8731496 8731543 Tirant 11 8397 3.5 5.0 4.2 2.1 8444 chr2L 8723099 intron raw - chr2L 8727321 intron raw - chr2L 8731543 intron raw - chr2L_11_8725001 chr2L_8725001 RAL-377 306 chr2L 8772777 8772818 chr2L 8772882 8772927 6 106 11.0 4.0 7.5 0.7 150 chr2L 8772777 intergenic CG9466 -,CG9465 - chr2L 8772852 intergenic CG9466 - chr2L 8772927 intergenic CG9466 - chr2L_6_8770001 chr2L_8770001 RAL-377 307 chr2L 8794985 8795035 chr2L 8795094 8795144 13 108 11.0 5.5 8.2 1.4 159 chr2L 8794985 intergenic not near genes chr2L 8795064 intergenic not near genes chr2L 8795144 intergenic not near genes chr2L_13_8795001 chr2L_8795001 RAL-377 308 chr2L 8799780 8799832 chr2L 8799916 8799968 10 134 15.0 13.5 14.2 0.7 188 chr2L 8799780 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799968 intergenic not near genes chr2L_10_8795001 chr2L_8795001 RAL-377 309 chr2L 8815432 8815474 chr2L 8815527 8815551 9 92 8.5 7.5 8.0 1.0 119 chr2L 8815432 intergenic not near genes chr2L 8815492 intergenic not near genes chr2L 8815551 intergenic not near genes chr2L_9_8815001 chr2L_8815001 RAL-377 310 chr2L 8820917 8820956 chr2L 8821016 8821055 4 99 6.5 9.0 7.8 0.5 138 chr2L 8820917 intergenic not near genes chr2L 8820986 intergenic not near genes chr2L 8821055 intergenic not near genes chr2L_4_8820001 chr2L_8820001 RAL-377 311 chr2L 8904348 8904392 chr2L 8904582 8904626 11 234 9.5 4.5 7.0 1.4 278 chr2L 8904348 intron CG34398 + chr2L 8904487 intron CG34398 + chr2L 8904626 intron CG34398 + chr2L_11_8900001 chr2L_8900001 RAL-377 312 chr2L 8939650 8939679 chr2L 8939750 8939779 10 100 14.0 16.0 15.0 0.6 129 chr2L 8939650 3` UTR Tsp29Fb + chr2L 8939714 3` UTR Tsp29Fb + chr2L 8939779 intergenic CG9510 -,Tsp29Fb + chr2L_10_8935001 chr2L_8935001 RAL-377 313 chr2L 8980439 8980462 chr2L 8980548 8980570 7 109 21.0 5.5 13.2 0.5 131 chr2L 8980439 intron CG13101 - chr2L 8980504 intron CG13101 - chr2L 8980570 intron CG13101 - chr2L_7_8980001 chr2L_8980001 RAL-377 314 chr2L 9000259 9000311 chr2L 9007789 9007841 roo 21 7529 5.5 0.0 2.8 5.5 7582 chr2L 9000259 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007841 intergenic not near genes chr2L_21_9000001 chr2L_9000001 RAL-377 315 chr2L 9035143 9035184 chr2L 9035241 9035287 7 102 10.5 10.5 10.5 0.6 144 chr2L 9035143 intergenic not near genes chr2L 9035215 intergenic not near genes chr2L 9035287 intergenic not near genes chr2L_7_9035001 chr2L_9035001 RAL-377 316 chr2L 9040011 9040058 chr2L 9040118 9040165 11 106 4.0 2.0 3.0 2.8 154 chr2L 9040011 intergenic not near genes chr2L 9040088 intergenic not near genes chr2L 9040165 intergenic not near genes chr2L_11_9040001 chr2L_9040001 RAL-377 317 chr2L 9040864 9040909 chr2L 9040960 9041005 10 96 13.5 12.5 13.0 0.7 141 chr2L 9040864 intergenic not near genes chr2L 9040934 intergenic not near genes chr2L 9041005 intergenic not near genes chr2L_10_9040001 chr2L_9040001 RAL-377 318 chr2L 9158772 9158819 chr2L 9158889 9158941 14 117 5.0 0.0 2.5 4.0 169 chr2L 9158772 intron CG32982 + chr2L 9158856 intron CG32982 + chr2L 9158941 intron CG32982 + chr2L_14_9155001 chr2L_9155001 RAL-377 319 chr2L 9174297 9174321 chr2L 9174654 9174678 6 357 8.5 6.0 7.2 0.7 381 chr2L 9174297 intron tai + chr2L 9174488 intron tai + chr2L 9174678 intron tai + chr2L_6_9170001 chr2L_9170001 RAL-377 320 chr2L 9190951 9190960 chr2L 9191052 9191061 5 101 0.0 6.5 3.2 1.2 110 chr2L 9190951 intron tai + chr2L 9191006 intron tai + chr2L 9191061 intron tai + chr2L_5_9190001 chr2L_9190001 RAL-377 321 chr2L 9217959 9217996 chr2L 9222760 9222803 Doc 16 4806 3.5 6.5 5.0 2.7 4844 chr2L 9217959 intron tai + chr2L 9220381 intron tai + chr2L 9222803 intron tai + chr2L_16_9220001 chr2L_9220001 RAL-377 322 chr2L 9230693 9230710 chr2L 9230791 9230808 7 98 2.0 8.0 5.0 1.2 115 chr2L 9230693 intron tai + chr2L 9230750 intron tai + chr2L 9230808 intron tai + chr2L_7_9230001 chr2L_9230001 RAL-377 323 chr2L 9251124 9251178 chr2L 9251241 9251284 8 106 13.0 11.0 12.0 0.6 160 chr2L 9251124 intergenic aust -,borr - chr2L 9251204 intergenic aust -,borr - chr2L 9251284 intergenic borr -,aust - chr2L_8_9250001 chr2L_9250001 RAL-377 324 chr2L 9264881 9264925 chr2L 9264980 9265025 6 100 13.0 10.5 11.8 0.5 144 chr2L 9264881 intron Ggamma30A + chr2L 9264953 intron Ggamma30A + chr2L 9265025 intron Ggamma30A + chr2L_6_9260001 chr2L_9260001 RAL-377 325 chr2L 9270718 9270752 chr2L 9270833 9270861 5 114 15.0 10.5 12.8 0.4 143 chr2L 9270718 intron Ggamma30A + chr2L 9270790 intron Ggamma30A + chr2L 9270861 intron Ggamma30A + chr2L_5_9270001 chr2L_9270001 RAL-377 326 chr2L 9279966 9280018 chr2L 9280080 9280132 7 112 9.5 13.0 11.2 0.6 166 chr2L 9279966 intron Ggamma30A + chr2L 9280049 intron Ggamma30A + chr2L 9280132 intron Ggamma30A + chr2L_7_9280001 chr2L_9280001 RAL-377 327 chr2L 9287303 9287356 chr2L 9287420 9287473 6 115 11.5 11.5 11.5 0.5 170 chr2L 9287303 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287473 intron Ggamma30A + chr2L_6_9285001 chr2L_9285001 RAL-377 328 chr2L 9297358 9297403 chr2L 9297455 9297500 5 96 12.0 11.0 11.5 0.4 142 chr2L 9297358 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297500 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-377 329 chr2L 9303345 9303495 chr2L 9303467 9303592 15 116 5.5 1.0 3.2 3.6 247 chr2L 9303345 intergenic not near genes chr2L 9303468 intergenic not near genes chr2L 9303592 intergenic not near genes chr2L_15_9300001 chr2L_9300001 RAL-377 330 chr2L 9304492 9304511 chr2L 9304591 9304610 6 99 13.5 13.0 13.2 0.4 118 chr2L 9304492 3` UTR CR42844 - chr2L 9304551 3` UTR CR42844 - chr2L 9304610 3` UTR CR42844 - chr2L_6_9300001 chr2L_9300001 RAL-377 331 chr2L 9324905 9324941 chr2L 9325001 9325043 4 100 5.0 8.0 6.5 0.5 138 chr2L 9324905 intergenic not near genes chr2L 9324974 intergenic not near genes chr2L 9325043 intergenic not near genes chr2L_4_9320001 chr2L_9320001 RAL-377 332 chr2L 9391652 9391702 chr2L 9391759 9391809 7 107 12.5 14.5 13.5 0.5 157 chr2L 9391652 intron Shawl - chr2L 9391730 intron Shawl - chr2L 9391809 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-377 333 chr2L 9393480 9393526 chr2L 9396467 9396508 jockey 17 2987 3.0 4.0 3.5 3.8 3028 chr2L 9393480 intron Shawl - chr2L 9394994 intron Shawl - chr2L 9396508 intron Shawl - chr2L_17_9390001 chr2L_9390001 RAL-377 334 chr2L 9407889 9407905 chr2L 9407990 9408006 4 101 8.5 6.0 7.2 0.5 117 chr2L 9407889 intron Shawl - chr2L 9407948 intron Shawl - chr2L 9408006 intron Shawl - chr2L_4_9405001 chr2L_9405001 RAL-377 335 chr2L 9451019 9451039 chr2L 9451139 9451164 6 124 10.0 8.0 9.0 0.6 145 chr2L 9451019 intron numb + chr2L 9451092 intron numb + chr2L 9451164 intron numb + chr2L_6_9450001 chr2L_9450001 RAL-377 336 chr2L 9454961 9455007 chr2L 9455083 9455131 6 120 11.0 6.5 8.8 0.6 170 chr2L 9454961 intron numb + chr2L 9455046 intron numb + chr2L 9455131 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-377 337 chr2L 9464840 9464871 chr2L 9464937 9464968 6 97 15.5 15.0 15.2 0.4 128 chr2L 9464840 intergenic not near genes chr2L 9464904 intergenic not near genes chr2L 9464968 intergenic not near genes chr2L_6_9460001 chr2L_9460001 RAL-377 338 chr2L 9467977 9468027 chr2L 9468085 9468135 5 108 15.5 15.0 15.2 0.3 158 chr2L 9467977 intergenic not near genes chr2L 9468056 intergenic not near genes chr2L 9468135 intergenic not near genes chr2L_5_9465001 chr2L_9465001 RAL-377 339 chr2L 9474778 9474810 chr2L 9474882 9474924 5 112 14.5 12.5 13.5 0.3 146 chr2L 9474778 intergenic not near genes chr2L 9474851 intergenic not near genes chr2L 9474924 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-377 340 chr2L 9490532 9490549 chr2L 9490602 9490649 6 92 1.0 6.5 3.8 1.2 117 chr2L 9490532 intergenic not near genes chr2L 9490590 intergenic not near genes chr2L 9490649 intergenic not near genes chr2L_6_9490001 chr2L_9490001 RAL-377 341 chr2L 9506345 9506364 chr2L 9506447 9506466 12 102 2.0 0.5 1.2 5.5 121 chr2L 9506345 intron CG33298 + chr2L 9506406 intron CG33298 + chr2L 9506466 intron CG33298 + chr2L_12_9505001 chr2L_9505001 RAL-377 342 chr2L 9527248 9527308 chr2L 9527345 9527410 7 100 0.0 0.0 0.0 7.0 162 chr2L 9527248 intron Oatp30B + chr2L 9527329 intron Oatp30B + chr2L 9527410 intron Oatp30B + chr2L_7_9525001 chr2L_9525001 RAL-377 343 chr2L 9601657 9601840 chr2L 9601764 9601940 10 106 9.0 4.5 6.8 1.3 283 chr2L 9601657 intergenic not near genes chr2L 9601798 intergenic not near genes chr2L 9601940 intergenic not near genes chr2L_10_9600001 chr2L_9600001 RAL-377 344 chr2L 9618874 9618909 chr2L 9618971 9619006 4 97 9.0 8.0 8.5 0.4 132 chr2L 9618874 intron GlcAT-S + chr2L 9618940 intron GlcAT-S + chr2L 9619006 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-377 345 chr2L 9668050 9668098 chr2L 9668265 9668313 6 212 6.5 14.5 10.5 0.5 263 chr2L 9668050 intergenic not near genes chr2L 9668182 intergenic not near genes chr2L 9668313 intergenic not near genes chr2L_6_9665001 chr2L_9665001 RAL-377 346 chr2L 9693788 9693828 chr2L 9693893 9693933 6 105 8.5 9.0 8.8 0.6 145 chr2L 9693788 intron Pka-C1 - chr2L 9693860 intron Pka-C1 - chr2L 9693933 intron Pka-C1 - chr2L_6_9690001 chr2L_9690001 RAL-377 347 chr2L 9706137 9706144 chr2L 9706249 9706257 4 113 8.5 7.5 8.0 0.4 120 chr2L 9706137 intron pelo + chr2L 9706197 intron pelo + chr2L 9706257 intron pelo + chr2L_4_9705001 chr2L_9705001 RAL-377 348 chr2L 9722263 9722290 chr2L 9722368 9722395 6 104 11.5 13.5 12.5 0.4 132 chr2L 9722263 intron Nckx30C - chr2L 9722329 intron Nckx30C - chr2L 9722395 intron Nckx30C - chr2L_6_9720001 chr2L_9720001 RAL-377 349 chr2L 9730966 9731005 chr2L 9731059 9731103 5 100 3.0 3.5 3.2 1.2 137 chr2L 9730966 intron Nckx30C - chr2L 9731034 intron Nckx30C - chr2L 9731103 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-377 350 chr2L 9810029 9810047 chr2L 9810159 9810177 5 130 15.5 10.5 13.0 0.4 148 chr2L 9810029 intron nAChRalpha6 - chr2L 9810103 intron nAChRalpha6 - chr2L 9810177 intron nAChRalpha6 - chr2L_5_9810001 chr2L_9810001 RAL-377 351 chr2L 9819989 9820035 chr2L 9820096 9820142 6 106 9.5 11.0 10.2 0.5 153 chr2L 9819989 intron nAChRalpha6 - chr2L 9820066 intron nAChRalpha6 - chr2L 9820142 intron nAChRalpha6 - chr2L_6_9820001 chr2L_9820001 RAL-377 352 chr2L 9836382 9836430 chr2L 9836481 9836530 8 100 11.5 11.5 11.5 0.6 148 chr2L 9836382 intron nAChRalpha6 - chr2L 9836456 intron nAChRalpha6 - chr2L 9836530 intron nAChRalpha6 - chr2L_8_9835001 chr2L_9835001 RAL-377 353 chr2L 9837434 9837445 chr2L 9837514 9837543 5 94 4.0 2.5 3.2 1.2 109 chr2L 9837434 intron nAChRalpha6 - chr2L 9837488 intron nAChRalpha6 - chr2L 9837543 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-377 354 chr2L 9845201 9845233 chr2L 9845626 9845658 5 421 7.5 5.0 6.2 0.7 457 chr2L 9845201 intron nAChRalpha6 - chr2L 9845430 intron nAChRalpha6 - chr2L 9845658 intron nAChRalpha6 - chr2L_5_9845001 chr2L_9845001 RAL-377 355 chr2L 9871508 9871523 chr2L 9871612 9871626 4 104 13.0 11.5 12.2 0.3 118 chr2L 9871508 intron nAChRalpha6 - chr2L 9871567 intron nAChRalpha6 - chr2L 9871626 intron nAChRalpha6 - chr2L_4_9870001 chr2L_9870001 RAL-377 356 chr2L 9892490 9892533 chr2L 9892586 9892591 10 92 5.0 7.5 6.2 1.4 101 chr2L 9892490 intron mtDNA-helicase - chr2L 9892540 intron mtDNA-helicase - chr2L 9892591 intron mtDNA-helicase - chr2L_10_9890001 chr2L_9890001 RAL-377 357 chr2L 9905502 9905512 chr2L 9905631 9905641 5 128 10.0 8.5 9.2 0.5 139 chr2L 9905502 intron CG13124 - chr2L 9905572 intron CG13124 - chr2L 9905641 intron CG13124 - chr2L_5_9905001 chr2L_9905001 RAL-377 358 chr2L 9914939 9914979 chr2L 9915046 9915086 6 107 11.5 12.5 12.0 0.5 147 chr2L 9914939 3` UTR Srp54 + chr2L 9915012 3` UTR Srp54 + chr2L 9915086 intergenic Srp54 +,yip2 + chr2L_6_9915001 chr2L_9915001 RAL-377 359 chr2L 9960659 9960707 chr2L 9960836 9960884 5 177 16.0 15.5 15.8 0.3 225 chr2L 9960659 3` UTR CG5850 - chr2L 9960772 3` UTR CG5850 - chr2L 9960884 3` UTR CG5850 - chr2L_5_9960001 chr2L_9960001 RAL-377 360 chr2L 9973707 9973756 chr2L 9980846 9980859 HMS-Beagle 10 7131 2.5 4.0 3.2 2.4 7152 chr2L 9973707 intergenic not near genes chr2L 9977283 intergenic not near genes chr2L 9980859 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-377 361 chr2L 9982197 9982216 chr2L 9982320 9982339 5 123 5.0 9.5 7.2 0.6 142 chr2L 9982197 intergenic not near genes chr2L 9982268 intergenic not near genes chr2L 9982339 intergenic not near genes chr2L_5_9980001 chr2L_9980001 RAL-377 362 chr2L 9982218 9982232 chr2L 9982315 9982355 6 119 2.0 8.0 5.0 1.0 137 chr2L 9982218 intergenic not near genes chr2L 9982286 intergenic not near genes chr2L 9982355 intergenic not near genes chr2L_6_9980001 chr2L_9980001 RAL-377 363 chr2L 9986354 9986368 chr2L 9986468 9986483 5 115 7.0 8.0 7.5 0.6 129 chr2L 9986354 intron bib + chr2L 9986418 intron bib + chr2L 9986483 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-377 364 chr2L 10023058 10023094 chr2L 10023163 10023198 8 103 8.5 9.0 8.8 0.8 140 chr2L 10023058 intergenic not near genes chr2L 10023128 intergenic not near genes chr2L 10023198 intergenic not near genes chr2L_8_10020001 chr2L_10020001 RAL-377 365 chr2L 10044497 10044500 chr2L 10044593 10044596 4 96 9.0 11.5 10.2 0.4 99 chr2L 10044497 intergenic not near genes chr2L 10044546 intergenic not near genes chr2L 10044596 intergenic not near genes chr2L_4_10040001 chr2L_10040001 RAL-377 366 chr2L 10095614 10095662 chr2L 10095714 10095762 8 98 16.5 14.5 15.5 0.5 148 chr2L 10095614 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095762 intron CG44153 - chr2L_8_10095001 chr2L_10095001 RAL-377 367 chr2L 10114975 10114990 chr2L 10115079 10115094 4 104 6.5 5.5 6.0 0.6 119 chr2L 10114975 intron,intron CG44153 -,CG34109 + chr2L 10115034 intron,intron CG44153 -,CG34109 + chr2L 10115094 intron,intron CG44153 -,CG34109 + chr2L_4_10115001 chr2L_10115001 RAL-377 368 chr2L 10129172 10129197 chr2L 10129271 10129311 4 110 5.5 13.5 9.5 0.4 139 chr2L 10129172 intron CG44153 - chr2L 10129242 intron CG44153 - chr2L 10129311 intron CG44153 - chr2L_4_10125001 chr2L_10125001 RAL-377 369 chr2L 10153200 10153234 chr2L 10153283 10153333 11 95 0.0 2.0 1.0 5.5 133 chr2L 10153200 intron,exon CG44153 -,CG4839 + chr2L 10153266 intron,intron CG44153 -,CG4839 + chr2L 10153333 intron,exon CG44153 -,CG4839 + chr2L_11_10150001 chr2L_10150001 RAL-377 370 chr2L 10156304 10156348 chr2L 10163790 10163838 blood 12 7481 4.0 3.0 3.5 2.7 7534 chr2L 10156304 intron,3` UTR CG44153 -,CG4839 + chr2L 10160071 intron CG44153 - chr2L 10163838 intron CG44153 - chr2L_12_10160001 chr2L_10160001 RAL-377 371 chr2L 10176023 10176024 chr2L 16071771 16071771 8 5895748 27.0 16.0 21.5 0.4 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_8_13120001 chr2L_13120001 RAL-377 372 chr2L 10180575 10180597 chr2L 10180681 10180697 4 105 4.0 4.0 4.0 0.8 122 chr2L 10180575 intergenic CG44153 - chr2L 10180636 intergenic CG44153 - chr2L 10180697 intergenic CG44153 - chr2L_4_10180001 chr2L_10180001 RAL-377 373 chr2L 10232916 10232944 chr2L 10233012 10233042 11 97 4.5 10.5 7.5 1.3 126 chr2L 10232916 intron eEF1delta + chr2L 10232979 intron eEF1delta + chr2L 10233042 intron eEF1delta + chr2L_11_10230001 chr2L_10230001 RAL-377 374 chr2L 10262429 10262475 chr2L 10262530 10262576 6 101 18.5 18.5 18.5 0.3 147 chr2L 10262429 3` UTR Rsf1 - chr2L 10262502 3` UTR Rsf1 - chr2L 10262576 3` UTR Rsf1 - chr2L_6_10260001 chr2L_10260001 RAL-377 375 chr2L 10294159 10294194 chr2L 10294255 10294290 6 96 11.0 9.0 10.0 0.5 131 chr2L 10294159 intron Hand - chr2L 10294224 intron Hand - chr2L 10294290 intron Hand - chr2L_6_10290001 chr2L_10290001 RAL-377 376 chr2L 10294657 10294689 chr2L 10294763 10294795 15 106 11.0 8.5 9.8 1.4 138 chr2L 10294657 intron Hand - chr2L 10294726 intron Hand - chr2L 10294795 intron Hand - chr2L_15_10290001 chr2L_10290001 RAL-377 377 chr2L 10458086 10458101 chr2L 10458367 10458382 8 281 1.5 0.5 1.0 4.0 296 chr2L 10458086 intron LM408 + chr2L 10458234 intron LM408 + chr2L 10458382 intron LM408 + chr2L_8_10455001 chr2L_10455001 RAL-377 378 chr2L 10482995 10483045 chr2L 10483134 10483174 13 138 4.5 7.5 6.0 1.9 179 chr2L 10482995 intergenic RluA-2 +,Grip75 + chr2L 10483084 intergenic RluA-2 +,Grip75 + chr2L 10483174 intergenic Grip75 +,RluA-2 + chr2L_13_10480001 chr2L_10480001 RAL-377 379 chr2L 10490274 10490308 chr2L 10490376 10490405 6 100 14.0 13.5 13.8 0.4 131 chr2L 10490274 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490340 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490405 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_6_10490001 chr2L_10490001 RAL-377 380 chr2L 10495284 10495465 chr2L 10495381 10495571 12 103 12.0 8.5 10.2 1.1 287 chr2L 10495284 intron Myo31DF - chr2L 10495428 intron Myo31DF - chr2L 10495571 intron Myo31DF - chr2L_12_10495001 chr2L_10495001 RAL-377 381 chr2L 10500046 10500080 chr2L 10500152 10500186 9 106 10.5 10.5 10.5 0.8 140 chr2L 10500046 intron Myo31DF - chr2L 10500116 intron Myo31DF - chr2L 10500186 intron Myo31DF - chr2L_9_10500001 chr2L_10500001 RAL-377 382 chr2L 10515343 10515381 chr2L 10515456 10515494 8 113 23.0 17.0 20.0 0.4 151 chr2L 10515343 intron,intron CG45083 -,Fatp - chr2L 10515418 intron,intron CG45083 -,Fatp - chr2L 10515494 intron,intron CG45083 -,Fatp - chr2L_8_10515001 chr2L_10515001 RAL-377 383 chr2L 10531601 10531624 chr2L 10531710 10531736 7 111 20.0 18.5 19.2 0.3 135 chr2L 10531601 3` UTR Lip4 + chr2L 10531668 3` UTR Lip4 + chr2L 10531736 3` UTR Lip4 + chr2L_7_10530001 chr2L_10530001 RAL-377 384 chr2L 10572682 10572732 chr2L 10572783 10572833 13 100 9.5 13.0 11.2 1.1 151 chr2L 10572682 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572833 intron Trim9 + chr2L_13_10570001 chr2L_10570001 RAL-377 385 chr2L 10574559 10574590 chr2L 10574676 10574707 8 117 12.5 15.5 14.0 0.5 148 chr2L 10574559 intron Trim9 + chr2L 10574633 intron Trim9 + chr2L 10574707 intron Trim9 + chr2L_8_10570001 chr2L_10570001 RAL-377 386 chr2L 10580672 10580823 chr2L 10580762 10580924 18 95 12.0 11.5 11.8 1.4 252 chr2L 10580672 intron Trim9 + chr2L 10580798 intron Trim9 + chr2L 10580924 intron Trim9 + chr2L_18_10580001 chr2L_10580001 RAL-377 387 chr2L 10592823 10592867 chr2L 10600505 10600549 opus 24 7682 2.0 4.5 3.2 5.7 7726 chr2L 10592823 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600549 intron Trim9 + chr2L_24_10595001 chr2L_10595001 RAL-377 388 chr2L 10631206 10631217 chr2L 10631358 10631369 5 152 6.5 5.0 5.8 0.7 163 chr2L 10631206 intron CG7329 - chr2L 10631288 intron CG7329 - chr2L 10631369 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-377 389 chr2L 10640619 10640672 chr2L 10640728 10640781 13 106 2.0 2.5 2.2 4.1 162 chr2L 10640619 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640781 exon CG31872 + chr2L_13_10640001 chr2L_10640001 RAL-377 390 chr2L 10647580 10647585 chr2L 10647725 10647730 4 145 17.0 25.0 21.0 0.2 150 chr2L 10647580 exon CG17097 + chr2L 10647655 exon CG17097 + chr2L 10647730 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-377 391 chr2L 10679020 10679067 chr2L 10679128 10679156 7 103 4.0 4.0 4.0 1.4 136 chr2L 10679020 exon CG17104 + chr2L 10679088 exon CG17104 + chr2L 10679156 exon CG17104 + chr2L_7_10675001 chr2L_10675001 RAL-377 392 chr2L 10683432 10683478 chr2L 10683531 10683577 7 99 9.0 6.5 7.8 0.8 145 chr2L 10683432 3` UTR CG7299 - chr2L 10683504 3` UTR CG7299 - chr2L 10683577 3` UTR CG7299 - chr2L_7_10680001 chr2L_10680001 RAL-377 393 chr2L 10698153 10698159 chr2L 10698251 10698262 4 101 15.0 12.5 13.8 0.3 109 chr2L 10698153 5` UTR CR44181 + chr2L 10698208 intergenic CR44181 +,CG7300 - chr2L 10698262 intergenic CR44181 +,CG7300 - chr2L_4_10695001 chr2L_10695001 RAL-377 394 chr2L 10713882 10713907 chr2L 10714002 10714027 7 120 10.5 8.5 9.5 0.7 145 chr2L 10713882 intergenic not near genes chr2L 10713954 intergenic not near genes chr2L 10714027 intergenic not near genes chr2L_7_10710001 chr2L_10710001 RAL-377 395 chr2L 10748332 10748349 chr2L 10748428 10748443 4 96 9.0 8.0 8.5 0.4 111 chr2L 10748332 intron CG17124 - chr2L 10748388 intron CG17124 - chr2L 10748443 intron CG17124 - chr2L_4_10745001 chr2L_10745001 RAL-377 396 chr2L 10752372 10752409 chr2L 10752532 10752569 6 160 12.5 12.0 12.2 0.5 197 chr2L 10752372 intron CG17124 - chr2L 10752470 intron CG17124 - chr2L 10752569 intron CG17124 - chr2L_6_10750001 chr2L_10750001 RAL-377 397 chr2L 10801959 10801994 chr2L 10802044 10802075 7 92 9.5 12.0 10.8 0.6 116 chr2L 10801959 3` UTR CR44581 - chr2L 10802017 3` UTR CR44581 - chr2L 10802075 3` UTR CR44581 - chr2L_7_10800001 chr2L_10800001 RAL-377 398 chr2L 10830829 10830859 chr2L 10830928 10830959 8 100 6.0 3.0 4.5 1.5 130 chr2L 10830829 intron Nos - chr2L 10830894 intron Nos - chr2L 10830959 intron Nos - chr2L_8_10830001 chr2L_10830001 RAL-377 399 chr2L 10836743 10836779 chr2L 10836840 10836877 9 98 7.0 5.0 6.0 1.3 134 chr2L 10836743 intron Nos - chr2L 10836810 intron Nos - chr2L 10836877 intron Nos - chr2L_9_10835001 chr2L_10835001 RAL-377 400 chr2L 10852148 10852181 chr2L 10852257 10852290 8 109 10.0 6.5 8.2 0.9 142 chr2L 10852148 intron CG43129 + chr2L 10852219 intron CG43129 + chr2L 10852290 intron CG43129 + chr2L_8_10850001 chr2L_10850001 RAL-377 401 chr2L 10861532 10861556 chr2L 10861603 10861656 6 94 3.5 4.0 3.8 1.2 124 chr2L 10861532 3` UTR Stam + chr2L 10861594 3` UTR Stam + chr2L 10861656 3` UTR Stam + chr2L_6_10860001 chr2L_10860001 RAL-377 402 chr2L 10876560 10876572 chr2L 10883636 10883654 297 4 7078 3.0 4.0 3.5 0.9 7094 chr2L 10876560 intergenic not near genes chr2L 10880107 intergenic not near genes chr2L 10883654 intergenic not near genes chr2L_4_10880001 chr2L_10880001 RAL-377 403 chr2L 10939755 10939788 chr2L 10939856 10939889 5 99 19.0 14.5 16.8 0.3 134 chr2L 10939755 intron dpr2 - chr2L 10939822 intron dpr2 - chr2L 10939889 intron dpr2 - chr2L_5_10935001 chr2L_10935001 RAL-377 404 chr2L 11032353 11032374 chr2L 11032466 11032481 4 108 9.0 11.5 10.2 0.4 128 chr2L 11032353 intron Samuel - chr2L 11032417 intron Samuel - chr2L 11032481 intron Samuel - chr2L_4_11030001 chr2L_11030001 RAL-377 405 chr2L 11055804 11055845 chr2L 11055900 11055927 11 95 15.5 13.5 14.5 0.7 123 chr2L 11055804 intron Samuel - chr2L 11055866 intron Samuel - chr2L 11055927 intron Samuel - chr2L_11_11055001 chr2L_11055001 RAL-377 406 chr2L 11142496 11142534 chr2L 11142598 11142636 8 97 4.5 4.5 4.5 1.5 140 chr2L 11142496 intron Gyc32E - chr2L 11142566 intron Gyc32E - chr2L 11142636 intron Gyc32E - chr2L_8_11140001 chr2L_11140001 RAL-377 407 chr2L 11145696 11145733 chr2L 11145854 11145891 8 158 6.5 13.0 9.8 0.7 195 chr2L 11145696 intron Gyc32E - chr2L 11145794 intron Gyc32E - chr2L 11145891 intron Gyc32E - chr2L_8_11145001 chr2L_11145001 RAL-377 408 chr2L 11169454 11169500 chr2L 11169609 11169655 17 155 6.0 7.0 6.5 2.3 201 chr2L 11169454 intron Ca-beta - chr2L 11169554 intron Ca-beta - chr2L 11169655 intron Ca-beta - chr2L_17_11165001 chr2L_11165001 RAL-377 409 chr2L 11180057 11180103 chr2L 11180155 11180201 5 98 20.5 18.0 19.2 0.2 144 chr2L 11180057 intron,3` UTR Ca-beta -,CG4788 + chr2L 11180129 intron,3` UTR Ca-beta -,CG4788 + chr2L 11180201 intron,3` UTR Ca-beta -,CG4788 + chr2L_5_11180001 chr2L_11180001 RAL-377 410 chr2L 11185663 11185710 chr2L 11185774 11185821 8 109 10.0 11.5 10.8 0.7 158 chr2L 11185663 intron Ca-beta - chr2L 11185742 intron Ca-beta - chr2L 11185821 intron Ca-beta - chr2L_8_11185001 chr2L_11185001 RAL-377 411 chr2L 11189225 11189251 chr2L 11189342 11189368 7 116 5.0 0.0 2.5 2.0 143 chr2L 11189225 intron Ca-beta - chr2L 11189296 intron Ca-beta - chr2L 11189368 intron Ca-beta - chr2L_7_11185001 chr2L_11185001 RAL-377 412 chr2L 11193553 11193595 chr2L 11193656 11193709 7 109 7.5 16.5 12.0 0.5 156 chr2L 11193553 intron Ca-beta - chr2L 11193631 intron Ca-beta - chr2L 11193709 intron Ca-beta - chr2L_7_11190001 chr2L_11190001 RAL-377 413 chr2L 11198492 11198513 chr2L 11198595 11198616 9 102 0.0 4.5 2.2 2.8 124 chr2L 11198492 intron Ca-beta - chr2L 11198554 intron Ca-beta - chr2L 11198616 intron Ca-beta - chr2L_9_11195001 chr2L_11195001 RAL-377 414 chr2L 11224047 11224083 chr2L 11224178 11224214 7 131 17.5 15.0 16.2 0.4 167 chr2L 11224047 intron ab + chr2L 11224130 intron ab + chr2L 11224214 intron ab + chr2L_7_11220001 chr2L_11220001 RAL-377 415 chr2L 11245239 11245280 chr2L 11245337 11245378 5 93 3.5 7.0 5.2 0.8 139 chr2L 11245239 intron ab + chr2L 11245308 intron ab + chr2L 11245378 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-377 416 chr2L 11253338 11253343 chr2L 11253423 11253444 4 97 9.0 7.0 8.0 0.4 106 chr2L 11253338 intron ab + chr2L 11253391 intron ab + chr2L 11253444 intron ab + chr2L_4_11250001 chr2L_11250001 RAL-377 417 chr2L 11292361 11292404 chr2L 11292461 11292506 13 101 7.0 5.5 6.2 1.8 145 chr2L 11292361 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292506 intergenic not near genes chr2L_13_11290001 chr2L_11290001 RAL-377 418 chr2L 11298815 11298847 chr2L 11298912 11298944 7 97 5.5 6.0 5.8 1.0 129 chr2L 11298815 intergenic not near genes chr2L 11298880 intergenic not near genes chr2L 11298944 intergenic not near genes chr2L_7_11295001 chr2L_11295001 RAL-377 419 chr2L 11330189 11330228 chr2L 11330305 11330344 10 116 5.0 10.0 7.5 1.2 155 chr2L 11330189 intergenic not near genes chr2L 11330266 intergenic not near genes chr2L 11330344 intergenic not near genes chr2L_10_11330001 chr2L_11330001 RAL-377 420 chr2L 11357960 11358012 chr2L 11358058 11358110 10 96 18.0 17.0 17.5 0.5 150 chr2L 11357960 intergenic not near genes chr2L 11358035 intergenic not near genes chr2L 11358110 intergenic not near genes chr2L_10_11355001 chr2L_11355001 RAL-377 421 chr2L 11380600 11380641 chr2L 11380697 11380738 6 97 6.5 10.5 8.5 0.6 138 chr2L 11380600 intergenic not near genes chr2L 11380669 intergenic not near genes chr2L 11380738 intergenic not near genes chr2L_6_11380001 chr2L_11380001 RAL-377 422 chr2L 11397575 11397586 chr2L 11397702 11397716 5 129 15.5 15.0 15.2 0.3 141 chr2L 11397575 intergenic not near genes chr2L 11397646 intergenic not near genes chr2L 11397716 intergenic not near genes chr2L_5_11395001 chr2L_11395001 RAL-377 423 chr2L 11413270 11413321 chr2L 11413414 11413465 10 143 7.5 4.5 6.0 1.4 195 chr2L 11413270 intergenic not near genes chr2L 11413368 intergenic not near genes chr2L 11413465 intergenic not near genes chr2L_10_11410001 chr2L_11410001 RAL-377 424 chr2L 11418634 11418687 chr2L 11418733 11418778 11 98 5.0 7.0 6.0 1.6 144 chr2L 11418634 intergenic not near genes chr2L 11418706 intergenic not near genes chr2L 11418778 intergenic not near genes chr2L_11_11415001 chr2L_11415001 RAL-377 425 chr2L 11450108 11450156 chr2L 11450214 11450234 10 102 0.0 2.0 1.0 5.0 126 chr2L 11450108 intergenic not near genes chr2L 11450171 intergenic not near genes chr2L 11450234 intergenic not near genes chr2L_10_11450001 chr2L_11450001 RAL-377 426 chr2L 11458925 11459031 chr2L 11459061 11459204 7 138 7.0 7.0 7.0 0.9 279 chr2L 11458925 intergenic not near genes chr2L 11459064 intergenic not near genes chr2L 11459204 intergenic not near genes chr2L_7_11455001 chr2L_11455001 RAL-377 427 chr2L 11470861 11470896 chr2L 11470955 11470994 11 98 11.5 9.0 10.2 1.0 133 chr2L 11470861 intergenic not near genes chr2L 11470928 intergenic not near genes chr2L 11470994 intergenic not near genes chr2L_11_11470001 chr2L_11470001 RAL-377 428 chr2L 11536700 11536706 chr2L 11536801 11536807 4 101 7.5 7.0 7.2 0.5 107 chr2L 11536700 exon CG43438 + chr2L 11536754 3` UTR CG43438 + chr2L 11536807 3` UTR CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-377 429 chr2L 11537752 11537781 chr2L 11537884 11537918 9 136 6.0 10.0 8.0 1.0 166 chr2L 11537752 intergenic not near genes chr2L 11537835 intergenic not near genes chr2L 11537918 intergenic not near genes chr2L_9_11535001 chr2L_11535001 RAL-377 430 chr2L 11540560 11540614 chr2L 11547985 11548036 Tabor 13 7423 6.5 1.5 4.0 2.6 7476 chr2L 11540560 intergenic not near genes chr2L 11544298 intergenic not near genes chr2L 11548036 intergenic not near genes chr2L_13_11540001 chr2L_11540001 RAL-377 431 chr2L 11563621 11563666 chr2L 11568845 11568890 copia 13 5223 5.0 5.5 5.2 2.1 5269 chr2L 11563621 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568890 intergenic not near genes chr2L_13_11565001 chr2L_11565001 RAL-377 432 chr2L 11610553 11610572 chr2L 11610651 11610670 5 98 13.5 14.0 13.8 0.3 117 chr2L 11610553 intron,3` UTR kek2 +,spag4 - chr2L 11610612 intron,3` UTR kek2 +,spag4 - chr2L 11610670 intron,exon kek2 +,spag4 - chr2L_5_11610001 chr2L_11610001 RAL-377 433 chr2L 11629558 11629594 chr2L 11629674 11629710 8 116 11.5 11.5 11.5 0.6 152 chr2L 11629558 intergenic not near genes chr2L 11629634 intergenic not near genes chr2L 11629710 intergenic not near genes chr2L_8_11625001 chr2L_11625001 RAL-377 434 chr2L 11633146 11633198 chr2L 11633268 11633320 7 122 5.0 4.0 4.5 1.3 174 chr2L 11633146 intergenic not near genes chr2L 11633233 intergenic not near genes chr2L 11633320 intergenic not near genes chr2L_7_11630001 chr2L_11630001 RAL-377 435 chr2L 11661168 11661213 chr2L 11661272 11661317 10 104 12.0 13.5 12.8 0.7 149 chr2L 11661168 intergenic CR44497 - chr2L 11661242 intergenic CR44497 -,CR44479 - chr2L 11661317 intergenic CR44479 -,CR44497 - chr2L_10_11660001 chr2L_11660001 RAL-377 436 chr2L 11710036 11710069 chr2L 11710121 11710168 4 96 9.5 8.5 9.0 0.4 132 chr2L 11710036 intergenic not near genes chr2L 11710102 intergenic not near genes chr2L 11710168 intergenic not near genes chr2L_4_11710001 chr2L_11710001 RAL-377 437 chr2L 11713496 11713538 chr2L 11720982 11721016 blood 12 7486 2.0 7.5 4.8 2.1 7520 chr2L 11713496 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721016 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-377 438 chr2L 11725202 11725232 chr2L 11725304 11725335 7 103 12.5 13.0 12.8 0.5 133 chr2L 11725202 intergenic not near genes chr2L 11725268 intergenic not near genes chr2L 11725335 intergenic not near genes chr2L_7_11725001 chr2L_11725001 RAL-377 439 chr2L 11752849 11752886 chr2L 11753154 11753196 14 309 2.5 3.5 3.0 3.5 347 chr2L 11752849 intergenic CG42470 - chr2L 11753022 3` UTR CG42470 - chr2L 11753196 3` UTR CG42470 - chr2L_14_11750001 chr2L_11750001 RAL-377 440 chr2L 11821444 11821479 chr2L 11821563 11821599 6 116 8.0 5.5 6.8 0.8 155 chr2L 11821444 intron Pde1c - chr2L 11821522 intron Pde1c - chr2L 11821599 intron Pde1c - chr2L_6_11820001 chr2L_11820001 RAL-377 441 chr2L 11825686 11825694 chr2L 11825785 11825793 5 99 10.0 0.0 5.0 0.8 107 chr2L 11825686 intron Pde1c - chr2L 11825740 intron Pde1c - chr2L 11825793 intron Pde1c - chr2L_5_11825001 chr2L_11825001 RAL-377 442 chr2L 11828428 11828464 chr2L 11828524 11828560 11 96 9.5 11.0 10.2 1.0 132 chr2L 11828428 intron,intron Pde1c -,esc - chr2L 11828494 intron,intron Pde1c -,esc - chr2L 11828560 intron,intron Pde1c -,esc - chr2L_11_11825001 chr2L_11825001 RAL-377 443 chr2L 11841350 11841394 chr2L 11841448 11841492 6 101 4.5 0.5 2.5 1.7 142 chr2L 11841350 intron Pde1c - chr2L 11841421 intron Pde1c - chr2L 11841492 intron Pde1c - chr2L_6_11840001 chr2L_11840001 RAL-377 444 chr2L 11844172 11844188 chr2L 11844274 11844290 6 100 16.0 11.0 13.5 0.4 118 chr2L 11844172 intron Pde1c - chr2L 11844231 intron Pde1c - chr2L 11844290 intron Pde1c - chr2L_6_11840001 chr2L_11840001 RAL-377 445 chr2L 11849564 11849588 chr2L 11849787 11849811 6 223 12.0 7.0 9.5 0.6 247 chr2L 11849564 intron Pde1c - chr2L 11849688 intron Pde1c - chr2L 11849811 intron Pde1c - chr2L_6_11845001 chr2L_11845001 RAL-377 446 chr2L 11865513 11865525 chr2L 11865645 11865651 4 128 9.5 8.5 9.0 0.4 138 chr2L 11865513 intron Pde1c - chr2L 11865582 intron Pde1c - chr2L 11865651 intron Pde1c - chr2L_4_11865001 chr2L_11865001 RAL-377 447 chr2L 11874904 11874924 chr2L 11875005 11875025 5 101 5.0 15.5 10.2 0.4 121 chr2L 11874904 intron Pde1c - chr2L 11874964 intron Pde1c - chr2L 11875025 intron Pde1c - chr2L_5_11870001 chr2L_11870001 RAL-377 448 chr2L 11892520 11892811 chr2L 11892634 11892915 15 111 9.0 11.0 10.0 1.4 395 chr2L 11892520 intron Pde1c - chr2L 11892718 intron Pde1c - chr2L 11892915 intron Pde1c - chr2L_15_11890001 chr2L_11890001 RAL-377 449 chr2L 11925575 11925618 chr2L 11925684 11925688 6 102 12.0 9.0 10.5 0.5 113 chr2L 11925575 5` UTR Pde1c - chr2L 11925632 5` UTR Pde1c - chr2L 11925688 5` UTR Pde1c - chr2L_6_11925001 chr2L_11925001 RAL-377 450 chr2L 12031374 12031419 chr2L 12031475 12031520 9 101 14.0 13.0 13.5 0.6 146 chr2L 12031374 intron dmGlut + chr2L 12031447 intron dmGlut + chr2L 12031520 intron dmGlut + chr2L_9_12030001 chr2L_12030001 RAL-377 451 chr2L 12054908 12054947 chr2L 12055018 12055064 8 116 10.5 10.5 10.5 0.7 156 chr2L 12054908 intron JhI-21 - chr2L 12054986 intron JhI-21 - chr2L 12055064 intron JhI-21 - chr2L_8_12050001 chr2L_12050001 RAL-377 452 chr2L 12067312 12067350 chr2L 12074384 12074422 297 10 7072 7.0 4.5 5.8 1.5 7110 chr2L 12067312 intergenic not near genes chr2L 12070867 intergenic not near genes chr2L 12074422 intergenic not near genes chr2L_10_12070001 chr2L_12070001 RAL-377 453 chr2L 12080660 12080703 chr2L 12080791 12080834 6 130 12.0 15.5 13.8 0.4 174 chr2L 12080660 intergenic CR44591 +,CR44590 - chr2L 12080747 intergenic CR44590 -,CR44591 + chr2L 12080834 3` UTR CR44590 - chr2L_6_12080001 chr2L_12080001 RAL-377 454 chr2L 12088325 12088335 chr2L 12088440 12088449 4 115 6.0 8.5 7.2 0.5 124 chr2L 12088325 intergenic CR44593 + chr2L 12088387 intergenic CR44593 + chr2L 12088449 intergenic CR44593 + chr2L_4_12085001 chr2L_12085001 RAL-377 455 chr2L 12112030 12112044 chr2L 12112161 12112175 6 131 17.0 17.5 17.2 0.3 145 chr2L 12112030 3` UTR Phae2 + chr2L 12112102 3` UTR Phae2 + chr2L 12112175 3` UTR Phae2 + chr2L_6_12110001 chr2L_12110001 RAL-377 456 chr2L 12131452 12131489 chr2L 12131568 12131605 12 116 9.5 4.0 6.8 1.5 153 chr2L 12131452 intron rho-6 - chr2L 12131528 intron rho-6 - chr2L 12131605 intron rho-6 - chr2L_12_12130001 chr2L_12130001 RAL-377 457 chr2L 12132705 12132745 chr2L 12132811 12132851 10 106 0.0 3.5 1.8 3.6 146 chr2L 12132705 intron rho-6 - chr2L 12132778 intron rho-6 - chr2L 12132851 intron rho-6 - chr2L_10_12130001 chr2L_12130001 RAL-377 458 chr2L 12141168 12141202 chr2L 12141268 12141302 8 106 2.5 2.0 2.2 2.5 134 chr2L 12141168 intergenic not near genes chr2L 12141235 intergenic not near genes chr2L 12141302 intergenic not near genes chr2L_8_12140001 chr2L_12140001 RAL-377 459 chr2L 12151875 12151924 chr2L 12151990 12152003 9 108 12.5 9.0 10.8 0.8 128 chr2L 12151875 intron CG31760 + chr2L 12151939 intron CG31760 + chr2L 12152003 intron CG31760 + chr2L_9_12150001 chr2L_12150001 RAL-377 460 chr2L 12153918 12153950 chr2L 12154015 12154047 12 94 2.0 5.5 3.8 2.5 129 chr2L 12153918 exon CG31760 + chr2L 12153982 intron CG31760 + chr2L 12154047 intron CG31760 + chr2L_12_12150001 chr2L_12150001 RAL-377 461 chr2L 12156097 12156129 chr2L 12156206 12156238 4 109 13.0 15.0 14.0 0.3 141 chr2L 12156097 intron CG31760 + chr2L 12156168 intron CG31760 + chr2L 12156238 intron CG31760 + chr2L_4_12155001 chr2L_12155001 RAL-377 462 chr2L 12157593 12157629 chr2L 12157691 12157719 8 95 8.0 8.0 8.0 0.9 126 chr2L 12157593 intron CG31760 + chr2L 12157656 intron CG31760 + chr2L 12157719 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-377 463 chr2L 12179743 12179784 chr2L 12179849 12179890 9 106 5.0 8.5 6.8 1.2 147 chr2L 12179743 intron aret + chr2L 12179816 intron aret + chr2L 12179890 intron aret + chr2L_9_12175001 chr2L_12175001 RAL-377 464 chr2L 12203276 12203323 chr2L 12203377 12203419 7 99 7.5 7.5 7.5 0.8 143 chr2L 12203276 intron aret + chr2L 12203348 intron aret + chr2L 12203419 intron aret + chr2L_7_12200001 chr2L_12200001 RAL-377 465 chr2L 12229558 12229607 chr2L 12229655 12229704 6 96 9.0 11.0 10.0 0.5 146 chr2L 12229558 intron aret + chr2L 12229631 intron aret + chr2L 12229704 intron aret + chr2L_6_12225001 chr2L_12225001 RAL-377 466 chr2L 12236985 12237013 chr2L 12237090 12237118 4 105 7.5 8.5 8.0 0.4 133 chr2L 12236985 intron aret + chr2L 12237052 intron aret + chr2L 12237118 intron aret + chr2L_4_12235001 chr2L_12235001 RAL-377 467 chr2L 12239983 12240033 chr2L 12240079 12240134 11 100 17.0 16.5 16.8 0.6 151 chr2L 12239983 intron aret + chr2L 12240058 intron aret + chr2L 12240134 intron aret + chr2L_11_12240001 chr2L_12240001 RAL-377 468 chr2L 12263921 12263968 chr2L 12264023 12264070 6 102 9.0 7.5 8.2 0.7 149 chr2L 12263921 intron aret + chr2L 12263996 intron aret + chr2L 12264070 intron aret + chr2L_6_12260001 chr2L_12260001 RAL-377 469 chr2L 12268084 12268111 chr2L 12268186 12268213 7 102 11.5 4.5 8.0 0.8 129 chr2L 12268084 intron aret + chr2L 12268148 intron aret + chr2L 12268213 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-377 470 chr2L 12272449 12272465 chr2L 12272531 12272572 6 97 7.5 13.0 10.2 0.5 123 chr2L 12272449 intron aret + chr2L 12272510 intron aret + chr2L 12272572 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-377 471 chr2L 12305398 12305436 chr2L 12305503 12305544 13 107 6.0 6.5 6.2 1.8 146 chr2L 12305398 intron aret + chr2L 12305471 intron aret + chr2L 12305544 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-377 472 chr2L 12337276 12337308 chr2L 12337384 12337415 6 108 1.0 0.0 0.5 4.0 139 chr2L 12337276 intergenic not near genes chr2L 12337346 intergenic not near genes chr2L 12337415 intergenic not near genes chr2L_6_12335001 chr2L_12335001 RAL-377 473 chr2L 12373085 12373085 chr2L 15974279 15974279 7 3601194 17.5 14.5 16.0 0.4 3601194 chr2L 12373085 intron bru-2 + chr2L 14173682 intron CG43333 - chr2L 15974279 intergenic not near genes chr2L_7_14170001 chr2L_14170001 RAL-377 474 chr2L 12380855 12380897 chr2L 12380954 12380996 7 99 7.5 5.5 6.5 0.9 141 chr2L 12380855 intron bru-2 + chr2L 12380926 intron bru-2 + chr2L 12380996 intron bru-2 + chr2L_7_12380001 chr2L_12380001 RAL-377 475 chr2L 12384916 12384955 chr2L 12385021 12385060 9 105 6.5 7.5 7.0 1.1 144 chr2L 12384916 intron bru-2 + chr2L 12384988 intron bru-2 + chr2L 12385060 intron bru-2 + chr2L_9_12380001 chr2L_12380001 RAL-377 476 chr2L 12487870 12487920 chr2L 12487971 12488021 19 100 7.0 7.5 7.2 2.3 151 chr2L 12487870 intron bun - chr2L 12487946 intron bun - chr2L 12488021 intron bun - chr2L_19_12485001 chr2L_12485001 RAL-377 477 chr2L 12491405 12491511 chr2L 12491513 12491628 9 135 9.5 7.5 8.5 0.9 223 chr2L 12491405 intron bun - chr2L 12491516 intron bun - chr2L 12491628 intron bun - chr2L_9_12490001 chr2L_12490001 RAL-377 478 chr2L 12507263 12507270 chr2L 12507372 12507379 5 109 3.5 0.0 1.8 1.8 116 chr2L 12507263 intron bun - chr2L 12507321 intron bun - chr2L 12507379 intron bun - chr2L_5_12505001 chr2L_12505001 RAL-377 479 chr2L 12527359 12527378 chr2L 12527462 12527480 4 102 6.0 15.5 10.8 0.3 121 chr2L 12527359 intron bun - chr2L 12527420 intron bun - chr2L 12527480 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-377 480 chr2L 12551019 12551056 chr2L 12551115 12551152 4 96 2.5 2.0 2.2 1.2 133 chr2L 12551019 intergenic not near genes chr2L 12551086 intergenic not near genes chr2L 12551152 intergenic not near genes chr2L_4_12550001 chr2L_12550001 RAL-377 481 chr2L 12558314 12558351 chr2L 12565463 12565500 HMS-Beagle 8 7147 2.0 5.5 3.8 1.7 7186 chr2L 12558314 intergenic not near genes chr2L 12561907 intergenic not near genes chr2L 12565500 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-377 482 chr2L 12570336 12570627 chr2L 12570435 12570730 6 104 1.5 0.0 0.8 3.3 394 chr2L 12570336 intergenic CR44598 - chr2L 12570533 intergenic CR44598 - chr2L 12570730 3` UTR CR44598 - chr2L_6_12570001 chr2L_12570001 RAL-377 483 chr2L 12583476 12583507 chr2L 12583588 12583619 15 111 4.0 0.0 2.0 5.0 143 chr2L 12583476 5` UTR CR44595 + chr2L 12583548 5` UTR CR44595 + chr2L 12583619 intergenic CR44595 + chr2L_15_12580001 chr2L_12580001 RAL-377 484 chr2L 12656151 12656186 chr2L 12656307 12656342 4 157 20.5 20.5 20.5 0.2 191 chr2L 12656151 intergenic not near genes chr2L 12656246 intergenic not near genes chr2L 12656342 intergenic not near genes chr2L_4_12655001 chr2L_12655001 RAL-377 485 chr2L 12693835 12693856 chr2L 12693932 12693953 8 97 12.0 8.0 10.0 0.7 118 chr2L 12693835 exon CG6153 + chr2L 12693894 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693953 3` UTR CG5780 - chr2L_8_12690001 chr2L_12690001 RAL-377 486 chr2L 12728912 12728950 chr2L 12729166 12729212 pogo 12 260 4.5 2.5 3.5 2.7 300 chr2L 12728912 intron MRP + chr2L 12729062 intron MRP + chr2L 12729212 exon MRP + chr2L_12_12725001 chr2L_12725001 RAL-377 487 chr2L 12731046 12731088 chr2L 12735833 12735875 F-element 18 4786 7.0 6.0 6.5 2.4 4829 chr2L 12731046 intron MRP + chr2L 12733460 intron MRP + chr2L 12735875 intron MRP + chr2L_18_12730001 chr2L_12730001 RAL-377 488 chr2L 12739161 12739197 chr2L 12743962 12743998 Doc 13 4801 4.0 4.0 4.0 2.6 4837 chr2L 12739161 exon MRP + chr2L 12741580 intron MRP + chr2L 12743998 exon MRP + chr2L_13_12740001 chr2L_12740001 RAL-377 489 chr2L 12751292 12751338 chr2L 12751395 12751435 7 101 11.0 12.0 11.5 0.6 143 chr2L 12751292 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751435 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-377 490 chr2L 12781792 12781815 chr2L 12789255 12789285 Quasimodo 5 7465 6.0 8.5 7.2 0.6 7493 chr2L 12781792 intergenic not near genes chr2L 12785538 intergenic not near genes chr2L 12789285 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-377 491 chr2L 12791599 12791619 chr2L 12795283 12795317 F-element 4 3694 0.5 3.0 1.8 1.4 3718 chr2L 12791599 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795317 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-377 492 chr2L 12791620 12791641 chr2L 12795280 12795339 F-element 5 3690 0.0 3.0 1.5 2.0 3719 chr2L 12791620 intergenic not near genes chr2L 12793480 intergenic not near genes chr2L 12795339 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-377 493 chr2L 12804822 12804870 chr2L 12804919 12804951 8 94 6.5 5.0 5.8 1.2 129 chr2L 12804822 intergenic not near genes chr2L 12804886 intergenic not near genes chr2L 12804951 intergenic not near genes chr2L_8_12800001 chr2L_12800001 RAL-377 494 chr2L 12807422 12807459 chr2L 12807524 12807561 6 102 6.5 2.0 4.2 1.2 139 chr2L 12807422 intergenic CR43818 - chr2L 12807492 intergenic CR43818 - chr2L 12807561 intergenic CR43818 - chr2L_6_12805001 chr2L_12805001 RAL-377 495 chr2L 12830324 12830357 chr2L 12830426 12830459 6 102 11.0 11.5 11.2 0.5 135 chr2L 12830324 intergenic not near genes chr2L 12830392 intergenic not near genes chr2L 12830459 intergenic not near genes chr2L_6_12830001 chr2L_12830001 RAL-377 496 chr2L 12838517 12838554 chr2L 12838620 12838652 6 100 7.0 8.5 7.8 0.7 135 chr2L 12838517 intergenic not near genes chr2L 12838584 intergenic not near genes chr2L 12838652 intergenic not near genes chr2L_6_12835001 chr2L_12835001 RAL-377 497 chr2L 12861672 12861731 chr2L 12863159 12863216 hobo 14 1486 3.0 3.5 3.2 3.3 1544 chr2L 12861672 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863216 intergenic not near genes chr2L_14_12860001 chr2L_12860001 RAL-377 498 chr2L 12930478 12930499 chr2L 12930574 12930595 6 96 9.0 9.0 9.0 0.6 117 chr2L 12930478 intergenic not near genes chr2L 12930536 intergenic not near genes chr2L 12930595 intergenic not near genes chr2L_6_12930001 chr2L_12930001 RAL-377 499 chr2L 12933841 12933881 chr2L 12941328 12941365 blood 12 7486 4.0 8.0 6.0 1.7 7524 chr2L 12933841 intergenic not near genes chr2L 12937603 intergenic not near genes chr2L 12941365 intergenic not near genes chr2L_12_12935001 chr2L_12935001 RAL-377 500 chr2L 12965646 12965686 chr2L 12965913 12965961 5 272 12.5 7.0 9.8 0.5 315 chr2L 12965646 intergenic not near genes chr2L 12965804 intergenic not near genes chr2L 12965961 intergenic not near genes chr2L_5_12965001 chr2L_12965001 RAL-377 501 chr2L 13036224 13036272 chr2L 13036486 13036534 X-element 12 262 3.5 6.0 4.8 2.1 310 chr2L 13036224 intron CG9932 - chr2L 13036379 intron CG9932 - chr2L 13036534 intron CG9932 - chr2L_12_13035001 chr2L_13035001 RAL-377 502 chr2L 13063363 13063403 chr2L 13063457 13063500 7 95 2.5 5.0 3.8 1.5 137 chr2L 13063363 intergenic not near genes chr2L 13063432 intergenic not near genes chr2L 13063500 intergenic not near genes chr2L_7_13060001 chr2L_13060001 RAL-377 503 chr2L 13147734 13147772 chr2L 13147825 13147865 7 87 4.0 2.5 3.2 1.7 131 chr2L 13147734 intergenic not near genes chr2L 13147800 intergenic not near genes chr2L 13147865 intergenic not near genes chr2L_7_13145001 chr2L_13145001 RAL-377 504 chr2L 13152225 13152242 chr2L 13152318 13152340 4 95 6.5 2.5 4.5 0.7 115 chr2L 13152225 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152340 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-377 505 chr2L 13212716 13212755 chr2L 13214295 13214338 6 1579 18.0 20.0 19.0 0.3 1622 chr2L 13212716 exon kek4 - chr2L 13213527 exon kek4 - chr2L 13214338 exon kek4 - chr2L_6_13210001 chr2L_13210001 RAL-377 506 chr2L 13215366 13215409 chr2L 13215661 13215704 8 295 15.5 14.0 14.8 0.5 338 chr2L 13215366 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215535 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215704 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_8_13215001 chr2L_13215001 RAL-377 507 chr2L 13231864 13231912 chr2L 13231995 13232043 13 131 7.5 5.0 6.2 1.8 179 chr2L 13231864 intergenic Prosalpha6T + chr2L 13231954 intergenic Prosalpha6T + chr2L 13232043 5` UTR Prosalpha6T + chr2L_13_13230001 chr2L_13230001 RAL-377 508 chr2L 13241942 13241948 chr2L 13244345 13244352 BS 4 2404 2.0 2.0 2.0 1.3 2410 chr2L 13241942 5` UTR CR45330 + chr2L 13243147 intron CR45330 + chr2L 13244352 5` UTR CR45330 + chr2L_4_13240001 chr2L_13240001 RAL-377 509 chr2L 13245378 13245423 chr2L 13245491 13245516 15 111 13.0 9.5 11.2 1.2 138 chr2L 13245378 intergenic snRNA:U5:34A + chr2L 13245447 intergenic snRNA:U5:34A + chr2L 13245516 intergenic not near genes chr2L_15_13245001 chr2L_13245001 RAL-377 510 chr2L 13255277 13255299 chr2L 13255437 13255452 4 158 0.0 3.0 1.5 1.6 175 chr2L 13255277 intron CG31728 + chr2L 13255364 intron CG31728 + chr2L 13255452 exon CG31728 + chr2L_4_13255001 chr2L_13255001 RAL-377 511 chr2L 13283828 13283865 chr2L 13283949 13283986 10 121 15.0 15.5 15.2 0.6 158 chr2L 13283828 3` UTR CG44085 + chr2L 13283907 3` UTR CG44085 + chr2L 13283986 3` UTR,3` UTR CG44085 +,Drep-4 - chr2L_10_13280001 chr2L_13280001 RAL-377 512 chr2L 13294373 13294421 chr2L 13294475 13294523 8 101 9.5 13.0 11.2 0.7 150 chr2L 13294373 intron CG31729 + chr2L 13294448 intron CG31729 + chr2L 13294523 intron CG31729 + chr2L_8_13290001 chr2L_13290001 RAL-377 513 chr2L 13314513 13314549 chr2L 13316280 13316305 6 1756 11.5 10.5 11.0 0.5 1792 chr2L 13314513 intron CG43778 - chr2L 13315409 intron CG43778 - chr2L 13316305 intron CG43778 - chr2L_6_13315001 chr2L_13315001 RAL-377 514 chr2L 13374307 13374356 chr2L 13374412 13374463 9 100 11.0 12.0 11.5 0.7 156 chr2L 13374307 5` UTR CG6565 + chr2L 13374385 5` UTR CG6565 + chr2L 13374463 5` UTR CG6565 + chr2L_9_13370001 chr2L_13370001 RAL-377 515 chr2L 13398699 13398751 chr2L 13398799 13398851 8 100 11.0 12.5 11.8 0.6 152 chr2L 13398699 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398775 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398851 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_8_13395001 chr2L_13395001 RAL-377 516 chr2L 13405629 13405678 chr2L 13410446 13410495 Doc 24 4816 3.5 10.0 6.8 3.1 4866 chr2L 13405629 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_24_13405001 chr2L_13405001 RAL-377 517 chr2L 13412307 13412350 chr2L 13412454 13412497 11 147 9.0 9.0 9.0 1.1 190 chr2L 13412307 intergenic CG16848 + chr2L 13412402 intergenic CG16848 + chr2L 13412497 intergenic CG16848 + chr2L_11_13410001 chr2L_13410001 RAL-377 518 chr2L 13449445 13449494 chr2L 13456901 13456950 Quasimodo 22 7456 3.0 7.0 5.0 3.7 7505 chr2L 13449445 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456950 intron CG42784 + chr2L_22_13450001 chr2L_13450001 RAL-377 519 chr2L 13470643 13470672 chr2L 13470726 13470776 8 100 13.0 15.5 14.2 0.5 133 chr2L 13470643 intron CG42784 + chr2L 13470710 intron CG42784 + chr2L 13470776 intron CG42784 + chr2L_8_13470001 chr2L_13470001 RAL-377 520 chr2L 13481435 13481464 chr2L 13482062 13482091 jockey 8 626 6.0 4.0 5.0 1.3 656 chr2L 13481435 intron CG42784 + chr2L 13481763 intron CG42784 + chr2L 13482091 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-377 521 chr2L 13501146 13501164 chr2L 13501479 13501497 8 332 21.5 16.5 19.0 0.4 351 chr2L 13501146 3` UTR B4 - chr2L 13501322 3` UTR B4 - chr2L 13501497 3` UTR B4 - chr2L_8_13500001 chr2L_13500001 RAL-377 522 chr2L 13517344 13517355 chr2L 13517427 13517451 6 90 12.0 11.5 11.8 0.5 107 chr2L 13517344 intron B4 - chr2L 13517398 intron B4 - chr2L 13517451 intron B4 - chr2L_6_13515001 chr2L_13515001 RAL-377 523 chr2L 13522263 13522283 chr2L 13527589 13527609 Transpac 5 5325 4.5 6.5 5.5 0.8 5346 chr2L 13522263 intron B4 - chr2L 13524936 intron B4 - chr2L 13527609 intron B4 - chr2L_5_13520001 chr2L_13520001 RAL-377 524 chr2L 13560385 13560418 chr2L 13565226 13565259 F-element 11 4841 8.5 3.5 6.0 1.6 4874 chr2L 13560385 intron kuz + chr2L 13562822 intron kuz + chr2L 13565259 intron kuz + chr2L_11_13560001 chr2L_13560001 RAL-377 525 chr2L 13676678 13676948 chr2L 13676776 13677059 18 104 17.5 16.5 17.0 1.0 381 chr2L 13676678 intergenic CG31814 - chr2L 13676868 3` UTR CG31814 - chr2L 13677059 3` UTR CG31814 - chr2L_18_13675001 chr2L_13675001 RAL-377 526 chr2L 13693471 13693506 chr2L 13693597 13693628 6 125 16.5 12.0 14.2 0.4 157 chr2L 13693471 intron CG31814 - chr2L 13693550 intron CG31814 - chr2L 13693628 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-377 527 chr2L 13713543 13713573 chr2L 13713638 13713669 9 96 14.0 15.0 14.5 0.6 126 chr2L 13713543 intron CG31814 - chr2L 13713606 intron CG31814 - chr2L 13713669 intron CG31814 - chr2L_9_13710001 chr2L_13710001 RAL-377 528 chr2L 13725269 13725316 chr2L 13725517 13725564 9 246 10.5 6.0 8.2 1.0 295 chr2L 13725269 intergenic not near genes chr2L 13725416 intergenic not near genes chr2L 13725564 intergenic not near genes chr2L_9_13725001 chr2L_13725001 RAL-377 529 chr2L 13749200 13749208 chr2L 13749303 13749311 4 103 0.0 0.5 0.2 3.3 111 chr2L 13749200 intron,intron CR44846 +,TM9SF4 + chr2L 13749256 intron,intron CR44846 +,TM9SF4 + chr2L 13749311 intron,intron CR44846 +,TM9SF4 + chr2L_4_13745001 chr2L_13745001 RAL-377 530 chr2L 13761795 13761836 chr2L 13762926 13762947 Doc 14 1129 4.0 6.5 5.2 2.3 1152 chr2L 13761795 intron TM9SF4 + chr2L 13762371 intron TM9SF4 + chr2L 13762947 intron TM9SF4 + chr2L_14_13760001 chr2L_13760001 RAL-377 531 chr2L 13846159 13846206 chr2L 13846262 13846299 19 99 9.5 9.0 9.2 1.9 140 chr2L 13846159 intron CenG1A + chr2L 13846229 intron CenG1A + chr2L 13846299 intron CenG1A + chr2L_19_13845001 chr2L_13845001 RAL-377 532 chr2L 13853079 13853112 chr2L 13862249 13862282 roo 14 9170 6.5 7.5 7.0 1.8 9203 chr2L 13853079 intron CenG1A + chr2L 13857680 intron CenG1A + chr2L 13862282 intron CenG1A + chr2L_14_13855001 chr2L_13855001 RAL-377 533 chr2L 13862305 13862355 chr2L 13862418 13862468 11 113 12.0 9.0 10.5 1.0 163 chr2L 13862305 intron CenG1A + chr2L 13862386 intron CenG1A + chr2L 13862468 intron CenG1A + chr2L_11_13860001 chr2L_13860001 RAL-377 534 chr2L 13914801 13914839 chr2L 13914900 13914939 9 99 11.0 11.0 11.0 0.8 138 chr2L 13914801 5` UTR Ance-3 + chr2L 13914870 5` UTR Ance-3 + chr2L 13914939 5` UTR Ance-3 + chr2L_9_13910001 chr2L_13910001 RAL-377 535 chr2L 13950494 13950543 chr2L 13952833 13952883 11 2342 19.0 24.0 21.5 0.5 2389 chr2L 13950494 intron Ance-3 + chr2L 13951688 intron Ance-3 + chr2L 13952883 intron Ance-3 + chr2L_11_13950001 chr2L_13950001 RAL-377 536 chr2L 13966074 13966109 chr2L 13966243 13966278 4 167 9.5 14.5 12.0 0.3 204 chr2L 13966074 intron NimB2 - chr2L 13966176 intron NimB2 - chr2L 13966278 intron NimB2 - chr2L_4_13965001 chr2L_13965001 RAL-377 537 chr2L 13981499 13981549 chr2L 13981610 13981660 8 110 10.0 9.5 9.8 0.7 161 chr2L 13981499 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981660 intron NimC2 + chr2L_8_13980001 chr2L_13980001 RAL-377 538 chr2L 13988264 13988302 chr2L 13988371 13988384 6 101 15.5 17.0 16.2 0.3 120 chr2L 13988264 intron rk - chr2L 13988324 intron rk - chr2L 13988384 intron rk - chr2L_6_13985001 chr2L_13985001 RAL-377 539 chr2L 14056794 14056839 chr2L 14056900 14056944 9 104 12.0 9.5 10.8 0.8 150 chr2L 14056794 intron nAChRalpha5 + chr2L 14056869 intron nAChRalpha5 + chr2L 14056944 intron nAChRalpha5 + chr2L_9_14055001 chr2L_14055001 RAL-377 540 chr2L 14102838 14102844 chr2L 14102939 14102945 6 101 6.0 3.0 4.5 1.1 107 chr2L 14102838 intergenic not near genes chr2L 14102892 intergenic not near genes chr2L 14102945 intergenic not near genes chr2L_6_14100001 chr2L_14100001 RAL-377 541 chr2L 14109494 14109543 chr2L 14109605 14109654 9 111 18.0 15.0 16.5 0.5 160 chr2L 14109494 intergenic CG15293 -,CG31769 - chr2L 14109574 intergenic CG31769 -,CG15293 - chr2L 14109654 3` UTR CG31769 - chr2L_9_14105001 chr2L_14105001 RAL-377 542 chr2L 14149701 14149741 chr2L 14149798 14149838 12 96 14.5 11.0 12.8 0.9 137 chr2L 14149701 intron CG17341 + chr2L 14149770 intron CG17341 + chr2L 14149838 intron CG17341 + chr2L_12_14145001 chr2L_14145001 RAL-377 543 chr2L 14161435 14161466 chr2L 14161544 14161575 7 106 9.5 16.0 12.8 0.5 140 chr2L 14161435 exon CG43332 - chr2L 14161505 exon CG43332 - chr2L 14161575 exon CG43332 - chr2L_7_14160001 chr2L_14160001 RAL-377 544 chr2L 14169993 14170029 chr2L 14170097 14170133 6 103 7.5 10.5 9.0 0.6 140 chr2L 14169993 intron CG43333 - chr2L 14170063 intron CG43333 - chr2L 14170133 intron CG43333 - chr2L_6_14170001 chr2L_14170001 RAL-377 545 chr2L 14290779 14290812 chr2L 14290879 14290912 5 100 13.0 12.5 12.8 0.4 133 chr2L 14290779 intron wb + chr2L 14290846 intron wb + chr2L 14290912 intron wb + chr2L_5_14290001 chr2L_14290001 RAL-377 546 chr2L 14307880 14307910 chr2L 14307987 14308017 8 107 13.0 16.0 14.5 0.5 137 chr2L 14307880 intron wb + chr2L 14307948 intron wb + chr2L 14308017 intron wb + chr2L_8_14305001 chr2L_14305001 RAL-377 547 chr2L 14374765 14374798 chr2L 14374876 14374907 13 111 17.5 19.5 18.5 0.7 142 chr2L 14374765 intergenic not near genes chr2L 14374836 intergenic not near genes chr2L 14374907 intergenic not near genes chr2L_13_14370001 chr2L_14370001 RAL-377 548 chr2L 14391925 14391947 chr2L 14392018 14392044 5 94 5.5 11.0 8.2 0.5 119 chr2L 14391925 exon elB - chr2L 14391984 intron elB - chr2L 14392044 intron elB - chr2L_5_14390001 chr2L_14390001 RAL-377 549 chr2L 14396182 14396231 chr2L 14398958 14399007 7 2776 17.5 15.0 16.2 0.4 2825 chr2L 14396182 intron elB - chr2L 14397594 intron elB - chr2L 14399007 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-377 550 chr2L 14427498 14427544 chr2L 14427609 14427655 14 111 15.5 15.5 15.5 0.8 157 chr2L 14427498 intergenic not near genes chr2L 14427576 intergenic not near genes chr2L 14427655 intergenic not near genes chr2L_14_14425001 chr2L_14425001 RAL-377 551 chr2L 14462714 14462822 chr2L 14462821 14462939 4 114 0.0 0.0 0.0 4.0 225 chr2L 14462714 intergenic not near genes chr2L 14462826 intergenic not near genes chr2L 14462939 intergenic not near genes chr2L_4_14460001 chr2L_14460001 RAL-377 552 chr2L 14465598 14465615 chr2L 14469095 14469112 hopper2 8 3497 5.5 10.0 7.8 0.9 3514 chr2L 14465598 intergenic not near genes chr2L 14467355 intergenic not near genes chr2L 14469112 intergenic not near genes chr2L_8_14465001 chr2L_14465001 RAL-377 553 chr2L 14588365 14588419 chr2L 14588538 14588593 19 173 3.5 3.5 3.5 4.2 228 chr2L 14588365 intergenic CG42680 - chr2L 14588479 intergenic CG42680 - chr2L 14588593 intergenic CG42680 - chr2L_19_14585001 chr2L_14585001 RAL-377 554 chr2L 14601958 14602002 chr2L 14602062 14602100 14 103 1.5 3.0 2.2 4.4 142 chr2L 14601958 exon osp - chr2L 14602029 intron osp - chr2L 14602100 intron osp - chr2L_14_14600001 chr2L_14600001 RAL-377 555 chr2L 14617873 14617922 chr2L 14617973 14618022 9 100 10.5 13.0 11.8 0.7 149 chr2L 14617873 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617948 intron,intron,intron osp -,Adh +,Adhr + chr2L 14618022 intron,intron,intron osp -,Adh +,Adhr + chr2L_9_14615001 chr2L_14615001 RAL-377 556 chr2L 14669191 14669220 chr2L 14669564 14669580 8 373 20.0 11.0 15.5 0.5 389 chr2L 14669191 intron osp - chr2L 14669386 intron osp - chr2L 14669580 intron osp - chr2L_8_14665001 chr2L_14665001 RAL-377 557 chr2L 14707196 14707237 chr2L 14707335 14707361 15 137 4.5 0.0 2.2 4.7 165 chr2L 14707196 intergenic not near genes chr2L 14707278 intergenic not near genes chr2L 14707361 intergenic not near genes chr2L_15_14705001 chr2L_14705001 RAL-377 558 chr2L 14715514 14715566 chr2L 14715625 14715677 18 108 1.5 3.5 2.5 5.1 163 chr2L 14715514 intergenic not near genes chr2L 14715596 intergenic not near genes chr2L 14715677 intergenic not near genes chr2L_18_14715001 chr2L_14715001 RAL-377 559 chr2L 14765225 14765264 chr2L 14765326 14765358 5 99 11.5 12.0 11.8 0.4 133 chr2L 14765225 intergenic not near genes chr2L 14765292 intergenic not near genes chr2L 14765358 intergenic not near genes chr2L_5_14765001 chr2L_14765001 RAL-377 560 chr2L 14774208 14774260 chr2L 14774445 14774497 10 235 13.5 14.0 13.8 0.7 289 chr2L 14774208 3` UTR CG4650 - chr2L 14774352 3` UTR CG4650 - chr2L 14774497 3` UTR CG4650 - chr2L_10_14770001 chr2L_14770001 RAL-377 561 chr2L 14803858 14803911 chr2L 14809081 14809126 copia 13 5222 3.0 2.5 2.8 3.4 5268 chr2L 14803858 intergenic not near genes chr2L 14806492 intergenic not near genes chr2L 14809126 intergenic not near genes chr2L_13_14805001 chr2L_14805001 RAL-377 562 chr2L 14833785 14833808 chr2L 14833909 14833932 5 124 8.0 5.5 6.8 0.6 147 chr2L 14833785 intergenic not near genes chr2L 14833858 intergenic not near genes chr2L 14833932 intergenic not near genes chr2L_5_14830001 chr2L_14830001 RAL-377 563 chr2L 14854943 14854984 chr2L 14855041 14855072 7 93 9.5 10.5 10.0 0.6 129 chr2L 14854943 intergenic not near genes chr2L 14855008 intergenic not near genes chr2L 14855072 intergenic not near genes chr2L_7_14855001 chr2L_14855001 RAL-377 564 chr2L 14889935 14889978 chr2L 14890380 14890423 jockey 14 444 3.5 4.5 4.0 2.8 488 chr2L 14889935 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890423 intergenic not near genes chr2L_14_14890001 chr2L_14890001 RAL-377 565 chr2L 14896826 14896869 chr2L 14897108 14897150 11 280 12.5 3.5 8.0 1.2 324 chr2L 14896826 intergenic not near genes chr2L 14896988 intergenic not near genes chr2L 14897150 intergenic not near genes chr2L_11_14895001 chr2L_14895001 RAL-377 566 chr2L 14905719 14905764 chr2L 14905836 14905881 8 117 0.5 0.0 0.2 6.7 162 chr2L 14905719 intergenic not near genes chr2L 14905800 intergenic not near genes chr2L 14905881 intergenic not near genes chr2L_8_14905001 chr2L_14905001 RAL-377 567 chr2L 14984354 14984402 chr2L 14991976 14992008 opus 11 7617 6.0 6.0 6.0 1.6 7654 chr2L 14984354 intron mol - chr2L 14988181 intron mol - chr2L 14992008 intron mol - chr2L_11_14985001 chr2L_14985001 RAL-377 568 chr2L 15014608 15014653 chr2L 15014705 15014752 7 98 11.0 13.5 12.2 0.5 144 chr2L 15014608 intergenic not near genes chr2L 15014680 intergenic not near genes chr2L 15014752 intergenic not near genes chr2L_7_15010001 chr2L_15010001 RAL-377 569 chr2L 15044534 15044717 chr2L 15044782 15044813 18 187 3.5 2.0 2.8 4.7 279 chr2L 15044534 intergenic ck - chr2L 15044674 intergenic ck - chr2L 15044813 intergenic ck - chr2L_18_15040001 chr2L_15040001 RAL-377 570 chr2L 15061762 15061803 chr2L 15064057 15064098 13 2295 33.5 39.5 36.5 0.3 2336 chr2L 15061762 intron vas + chr2L 15062930 intron,3` UTR vas +,vig - chr2L 15064098 intron,3` UTR vas +,vig - chr2L_13_15060001 chr2L_15060001 RAL-377 571 chr2L 15077878 15078102 chr2L 15077986 15078210 21 107 1.5 8.5 5.0 3.5 332 chr2L 15077878 intron CG15270 + chr2L 15078044 intron CG15270 + chr2L 15078210 intron CG15270 + chr2L_21_15075001 chr2L_15075001 RAL-377 572 chr2L 15080888 15080934 chr2L 15081001 15081050 4 115 11.0 10.0 10.5 0.3 162 chr2L 15080888 intron CG15270 + chr2L 15080969 intron CG15270 + chr2L 15081050 intron CG15270 + chr2L_4_15080001 chr2L_15080001 RAL-377 573 chr2L 15082642 15082692 chr2L 15082756 15082806 13 112 8.0 14.0 11.0 1.1 164 chr2L 15082642 intron CG15270 + chr2L 15082724 intron CG15270 + chr2L 15082806 intron CG15270 + chr2L_13_15080001 chr2L_15080001 RAL-377 574 chr2L 15127748 15127796 chr2L 15127854 15127887 12 103 9.0 10.5 9.8 1.1 139 chr2L 15127748 intergenic not near genes chr2L 15127818 intergenic not near genes chr2L 15127887 intergenic not near genes chr2L_12_15125001 chr2L_15125001 RAL-377 575 chr2L 15137760 15137773 chr2L 15137863 15137875 4 103 11.0 7.0 9.0 0.4 115 chr2L 15137760 intergenic not near genes chr2L 15137818 intergenic not near genes chr2L 15137875 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-377 576 chr2L 15138754 15138800 chr2L 15138857 15138899 4 103 0.0 4.5 2.2 1.2 145 chr2L 15138754 intergenic not near genes chr2L 15138826 intergenic not near genes chr2L 15138899 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-377 577 chr2L 15151044 15151088 chr2L 15151146 15151191 4 103 14.0 13.0 13.5 0.3 147 chr2L 15151044 intergenic not near genes chr2L 15151118 intergenic not near genes chr2L 15151191 intergenic not near genes chr2L_4_15150001 chr2L_15150001 RAL-377 578 chr2L 15161231 15161254 chr2L 15161387 15161410 4 156 16.5 12.5 14.5 0.3 179 chr2L 15161231 intergenic CR44770 + chr2L 15161320 intergenic CR44770 + chr2L 15161410 intergenic CR44770 +,CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-377 579 chr2L 15163926 15163932 chr2L 15164020 15164029 5 96 5.0 3.0 4.0 1.0 103 chr2L 15163926 intron CG4168 - chr2L 15163978 intron CG4168 - chr2L 15164029 intron CG4168 - chr2L_5_15160001 chr2L_15160001 RAL-377 580 chr2L 15226350 15226396 chr2L 15226446 15226487 11 93 1.0 3.0 2.0 3.7 137 chr2L 15226350 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226487 intergenic not near genes chr2L_11_15225001 chr2L_15225001 RAL-377 581 chr2L 15239464 15239507 chr2L 15239564 15239605 7 99 9.5 11.5 10.5 0.6 141 chr2L 15239464 intron ZnT35C - chr2L 15239534 intron ZnT35C - chr2L 15239605 intron ZnT35C - chr2L_7_15235001 chr2L_15235001 RAL-377 582 chr2L 15291418 15291456 chr2L 15291539 15291577 4 121 11.5 8.5 10.0 0.4 159 chr2L 15291418 intergenic CG15260 - chr2L 15291498 exon CG15260 - chr2L 15291577 exon CG15260 - chr2L_4_15290001 chr2L_15290001 RAL-377 583 chr2L 15332218 15332227 chr2L 15332598 15332608 4 380 15.5 7.5 11.5 0.3 390 chr2L 15332218 intergenic not near genes chr2L 15332413 intergenic not near genes chr2L 15332608 intergenic not near genes chr2L_4_15330001 chr2L_15330001 RAL-377 584 chr2L 15342325 15342359 chr2L 15342427 15342461 6 102 9.0 10.5 9.8 0.6 136 chr2L 15342325 intergenic not near genes chr2L 15342393 intergenic not near genes chr2L 15342461 intergenic not near genes chr2L_6_15340001 chr2L_15340001 RAL-377 585 chr2L 15394165 15394174 chr2L 15394275 15394284 4 110 13.5 13.0 13.2 0.3 119 chr2L 15394165 intergenic not near genes chr2L 15394224 intergenic not near genes chr2L 15394284 intergenic not near genes chr2L_4_15390001 chr2L_15390001 RAL-377 586 chr2L 15427315 15427351 chr2L 15427430 15427467 8 116 11.5 12.5 12.0 0.6 152 chr2L 15427315 intergenic not near genes chr2L 15427391 intergenic not near genes chr2L 15427467 intergenic not near genes chr2L_8_15425001 chr2L_15425001 RAL-377 587 chr2L 15439254 15439305 chr2L 15439362 15439413 12 108 2.0 3.0 2.5 3.4 159 chr2L 15439254 intergenic not near genes chr2L 15439334 intergenic not near genes chr2L 15439413 intergenic not near genes chr2L_12_15435001 chr2L_15435001 RAL-377 588 chr2L 15446030 15446074 chr2L 15453519 15453563 blood 13 7488 5.5 2.0 3.8 2.7 7533 chr2L 15446030 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453563 intergenic not near genes chr2L_13_15445001 chr2L_15445001 RAL-377 589 chr2L 15476396 15476420 chr2L 15476575 15476599 5 179 15.0 11.5 13.2 0.4 203 chr2L 15476396 intergenic sna - chr2L 15476498 intergenic sna - chr2L 15476599 3` UTR sna - chr2L_5_15475001 chr2L_15475001 RAL-377 590 chr2L 15483270 15483311 chr2L 15483376 15483417 5 106 10.0 10.0 10.0 0.5 147 chr2L 15483270 intergenic not near genes chr2L 15483344 intergenic not near genes chr2L 15483417 intergenic not near genes chr2L_5_15480001 chr2L_15480001 RAL-377 591 chr2L 15490029 15490044 chr2L 15490165 15490180 5 136 5.0 9.5 7.2 0.6 151 chr2L 15490029 intergenic not near genes chr2L 15490104 intergenic not near genes chr2L 15490180 intergenic not near genes chr2L_5_15490001 chr2L_15490001 RAL-377 592 chr2L 15499893 15499945 chr2L 15500001 15500052 8 108 8.0 11.5 9.8 0.7 159 chr2L 15499893 intron lace + chr2L 15499972 intron lace + chr2L 15500052 intron lace + chr2L_8_15495001 chr2L_15495001 RAL-377 593 chr2L 15509901 15509933 chr2L 15510057 15510093 5 158 10.0 9.5 9.8 0.5 192 chr2L 15509901 intergenic not near genes chr2L 15509997 intergenic not near genes chr2L 15510093 intergenic not near genes chr2L_5_15505001 chr2L_15505001 RAL-377 594 chr2L 15510925 15510959 chr2L 15511038 15511073 5 114 12.5 14.0 13.2 0.4 148 chr2L 15510925 intergenic not near genes chr2L 15510999 intergenic not near genes chr2L 15511073 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-377 595 chr2L 15521623 15521651 chr2L 15521726 15521754 4 103 12.5 13.0 12.8 0.3 131 chr2L 15521623 intergenic CR43761 + chr2L 15521688 intergenic CR43761 + chr2L 15521754 intergenic CR43761 + chr2L_4_15520001 chr2L_15520001 RAL-377 596 chr2L 15553334 15553380 chr2L 15553500 15553533 9 165 9.5 9.5 9.5 0.9 199 chr2L 15553334 intron kek3 + chr2L 15553434 intron kek3 + chr2L 15553533 intron kek3 + chr2L_9_15550001 chr2L_15550001 RAL-377 597 chr2L 15586397 15586437 chr2L 15593469 15593509 297 10 7071 5.0 4.5 4.8 1.7 7112 chr2L 15586397 intergenic not near genes chr2L 15589953 intergenic not near genes chr2L 15593509 intergenic not near genes chr2L_10_15585001 chr2L_15585001 RAL-377 598 chr2L 15732488 15732537 chr2L 15732603 15732652 5 115 5.5 7.5 6.5 0.7 164 chr2L 15732488 intron CycE - chr2L 15732570 intron CycE - chr2L 15732652 intron CycE - chr2L_5_15730001 chr2L_15730001 RAL-377 599 chr2L 15783428 15783464 chr2L 15783512 15783552 6 91 6.5 6.5 6.5 0.8 124 chr2L 15783428 intergenic not near genes chr2L 15783490 intergenic not near genes chr2L 15783552 intergenic not near genes chr2L_6_15780001 chr2L_15780001 RAL-377 600 chr2L 15790186 15790214 chr2L 15790317 15790345 6 128 4.0 5.5 4.8 1.0 159 chr2L 15790186 intergenic CG18109 + chr2L 15790266 intergenic CG18109 + chr2L 15790345 intergenic CG18109 + chr2L_6_15790001 chr2L_15790001 RAL-377 601 chr2L 15826875 15826892 chr2L 15829289 15829306 Tabor 9 2414 3.0 10.5 6.8 1.2 2431 chr2L 15826875 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829306 intergenic not near genes chr2L_9_15825001 chr2L_15825001 RAL-377 602 chr2L 15843291 15843312 chr2L 15845814 15845835 5 2523 25.0 18.0 21.5 0.2 2544 chr2L 15843291 intergenic not near genes chr2L 15844563 intergenic not near genes chr2L 15845835 intergenic not near genes chr2L_5_15840001 chr2L_15840001 RAL-377 603 chr2L 15843189 15843241 chr2L 15845881 15845933 9 2692 23.5 24.5 24.0 0.4 2744 chr2L 15843189 intergenic not near genes chr2L 15844561 intergenic not near genes chr2L 15845933 intergenic not near genes chr2L_9_15840001 chr2L_15840001 RAL-377 604 chr2L 15906166 15906214 chr2L 15906275 15906323 14 106 3.0 5.5 4.2 2.7 157 chr2L 15906166 intron beat-Ib - chr2L 15906244 intron beat-Ib - chr2L 15906323 exon beat-Ib - chr2L_14_15905001 chr2L_15905001 RAL-377 605 chr2L 15915641 15915679 chr2L 15915733 15915777 6 95 10.0 13.0 11.5 0.5 136 chr2L 15915641 intron beat-Ib - chr2L 15915709 intron beat-Ib - chr2L 15915777 intron beat-Ib - chr2L_6_15915001 chr2L_15915001 RAL-377 606 chr2L 15935185 15935218 chr2L 15935294 15935328 7 109 3.5 1.5 2.5 2.0 143 chr2L 15935185 intron beat-Ib - chr2L 15935256 intron beat-Ib - chr2L 15935328 intron beat-Ib - chr2L_7_15935001 chr2L_15935001 RAL-377 607 chr2L 15947632 15947639 chr2L 15947804 15947811 4 172 8.0 5.0 6.5 0.5 179 chr2L 15947632 intron beat-Ib - chr2L 15947722 intron beat-Ib - chr2L 15947811 intron beat-Ib - chr2L_4_15945001 chr2L_15945001 RAL-377 608 chr2L 15954170 15954201 chr2L 15954270 15954297 4 99 15.0 18.0 16.5 0.2 127 chr2L 15954170 intron beat-Ib - chr2L 15954234 intron beat-Ib - chr2L 15954297 intron beat-Ib - chr2L_4_15950001 chr2L_15950001 RAL-377 609 chr2L 15956012 15956041 chr2L 15957499 15957528 hobo 14 1486 2.5 7.0 4.8 2.4 1516 chr2L 15956012 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957528 intron beat-Ib - chr2L_14_15955001 chr2L_15955001 RAL-377 610 chr2L 15988020 15988071 chr2L 15988128 15988175 5 102 7.5 5.5 6.5 0.7 155 chr2L 15988020 intergenic not near genes chr2L 15988098 intergenic not near genes chr2L 15988175 intergenic not near genes chr2L_5_15985001 chr2L_15985001 RAL-377 611 chr2L 16001448 16001480 chr2L 16001556 16001588 6 108 9.5 13.5 11.5 0.5 140 chr2L 16001448 intron beat-Ic + chr2L 16001518 intron beat-Ic + chr2L 16001588 intron beat-Ic + chr2L_6_16000001 chr2L_16000001 RAL-377 612 chr2L 16026028 16026052 chr2L 16026148 16026187 5 126 14.0 11.5 12.8 0.4 159 chr2L 16026028 intron beat-Ic + chr2L 16026108 intron beat-Ic + chr2L 16026187 intron beat-Ic + chr2L_5_16025001 chr2L_16025001 RAL-377 613 chr2L 16028681 16028716 chr2L 16028850 16028885 7 169 10.5 7.0 8.8 0.7 204 chr2L 16028681 intron beat-Ic + chr2L 16028783 intron beat-Ic + chr2L 16028885 intron beat-Ic + chr2L_7_16025001 chr2L_16025001 RAL-377 614 chr2L 16058104 16058139 chr2L 16058265 16058300 6 161 14.5 13.0 13.8 0.4 196 chr2L 16058104 intron beat-Ia + chr2L 16058202 intron beat-Ia + chr2L 16058300 intron beat-Ia + chr2L_6_16055001 chr2L_16055001 RAL-377 615 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 16.0 19.0 17.5 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-377 616 chr2L 16115498 16115544 chr2L 16115594 16115640 6 96 14.5 16.0 15.2 0.4 142 chr2L 16115498 intergenic not near genes chr2L 16115569 intergenic not near genes chr2L 16115640 intergenic not near genes chr2L_6_16115001 chr2L_16115001 RAL-377 617 chr2L 16141152 16141193 chr2L 16146379 16146420 copia 19 5227 2.5 6.0 4.2 3.7 5268 chr2L 16141152 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146420 intergenic not near genes chr2L_19_16140001 chr2L_16140001 RAL-377 618 chr2L 16153721 16153756 chr2L 16160789 16160830 297 4 7071 4.5 3.0 3.8 0.8 7109 chr2L 16153721 intergenic not near genes chr2L 16157276 intergenic not near genes chr2L 16160830 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-377 619 chr2L 16197120 16197151 chr2L 16197796 16197847 4 690 17.5 12.0 14.8 0.3 727 chr2L 16197120 intergenic not near genes chr2L 16197484 intergenic not near genes chr2L 16197847 intergenic not near genes chr2L_4_16195001 chr2L_16195001 RAL-377 620 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 16.0 19.0 17.5 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-377 621 chr2L 16254876 16254910 chr2L 16255150 16255189 4 278 16.0 19.5 17.8 0.2 313 chr2L 16254876 intron PRL-1 - chr2L 16255032 intron PRL-1 - chr2L 16255189 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-377 622 chr2L 16280245 16280268 chr2L 16281426 16281459 1360 5 1188 4.5 2.5 3.5 1.1 1214 chr2L 16280245 intron crp - chr2L 16280852 intron crp - chr2L 16281459 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-377 623 chr2L 16354761 16354785 chr2L 16354868 16354897 4 111 5.0 4.0 4.5 0.7 136 chr2L 16354761 intergenic CaBP1 -,CG4455 + chr2L 16354829 intergenic CaBP1 -,CG4455 + chr2L 16354897 3` UTR CaBP1 - chr2L_4_16350001 chr2L_16350001 RAL-377 624 chr2L 16363649 16363761 chr2L 16363748 16363956 10 147 4.5 3.0 3.8 2.1 307 chr2L 16363649 intergenic not near genes chr2L 16363802 intergenic not near genes chr2L 16363956 intergenic not near genes chr2L_10_16360001 chr2L_16360001 RAL-377 625 chr2L 16363924 16363966 chr2L 16364190 16364231 8 266 7.0 12.0 9.5 0.8 307 chr2L 16363924 intergenic not near genes chr2L 16364078 intergenic not near genes chr2L 16364231 intergenic not near genes chr2L_8_16360001 chr2L_16360001 RAL-377 626 chr2L 16443977 16444007 chr2L 16444069 16444083 4 88 16.0 11.5 13.8 0.3 106 chr2L 16443977 intron CG5888 - chr2L 16444030 intron CG5888 - chr2L 16444083 intron CG5888 - chr2L_4_16440001 chr2L_16440001 RAL-377 627 chr2L 16504977 16505012 chr2L 16505107 16505142 4 129 7.5 10.0 8.8 0.4 165 chr2L 16504977 intron Tpr2 + chr2L 16505060 intron Tpr2 + chr2L 16505142 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-377 628 chr2L 16511968 16511996 chr2L 16519115 16519143 HMS-Beagle 7 7147 3.5 3.0 3.2 1.7 7175 chr2L 16511968 intron CG5953 - chr2L 16515556 intron CG5953 - chr2L 16519143 intron CG5953 - chr2L_7_16515001 chr2L_16515001 RAL-377 629 chr2L 16537302 16537352 chr2L 16537398 16537448 6 96 11.5 12.5 12.0 0.5 146 chr2L 16537302 intergenic not near genes chr2L 16537375 intergenic not near genes chr2L 16537448 intergenic not near genes chr2L_6_16535001 chr2L_16535001 RAL-377 630 chr2L 16570831 16570874 chr2L 16570927 16570970 8 94 8.5 10.0 9.2 0.8 139 chr2L 16570831 intron CG42389 + chr2L 16570900 intron CG42389 + chr2L 16570970 intron CG42389 + chr2L_8_16570001 chr2L_16570001 RAL-377 631 chr2L 16573623 16573659 chr2L 16573732 16573768 5 109 5.0 9.5 7.2 0.6 145 chr2L 16573623 intron CG42389 + chr2L 16573696 intron CG42389 + chr2L 16573768 intron CG42389 + chr2L_5_16570001 chr2L_16570001 RAL-377 632 chr2L 16583076 16583110 chr2L 16583183 16583218 8 108 13.5 12.0 12.8 0.6 142 chr2L 16583076 intron CG42389 + chr2L 16583147 intron CG42389 + chr2L 16583218 intron CG42389 + chr2L_8_16580001 chr2L_16580001 RAL-377 633 chr2L 16583541 16583579 chr2L 16583693 16583733 6 154 7.5 11.5 9.5 0.6 192 chr2L 16583541 intron CG42389 + chr2L 16583637 intron CG42389 + chr2L 16583733 intron CG42389 + chr2L_6_16580001 chr2L_16580001 RAL-377 634 chr2L 16594006 16594142 chr2L 16594103 16594252 7 99 11.5 12.5 12.0 0.5 246 chr2L 16594006 intron CG42389 + chr2L 16594129 intron CG42389 + chr2L 16594252 intron CG42389 + chr2L_7_16590001 chr2L_16590001 RAL-377 635 chr2L 16629342 16629351 chr2L 16629456 16629465 5 114 9.5 4.0 6.8 0.6 123 chr2L 16629342 intron CG42389 + chr2L 16629404 intron CG42389 + chr2L 16629465 intron CG42389 + chr2L_5_16625001 chr2L_16625001 RAL-377 636 chr2L 16633189 16633217 chr2L 16633281 16633315 5 97 11.5 7.5 9.5 0.5 126 chr2L 16633189 intron CG42389 + chr2L 16633252 intron CG42389 + chr2L 16633315 intron CG42389 + chr2L_5_16630001 chr2L_16630001 RAL-377 637 chr2L 16638040 16638071 chr2L 16638153 16638201 12 128 14.0 11.0 12.5 0.9 161 chr2L 16638040 intron CG42389 + chr2L 16638120 intron CG42389 + chr2L 16638201 intron CG42389 + chr2L_12_16635001 chr2L_16635001 RAL-377 638 chr2L 16670399 16670445 chr2L 16670496 16670532 4 94 12.5 13.0 12.8 0.3 133 chr2L 16670399 intron Trpgamma - chr2L 16670466 intron Trpgamma - chr2L 16670532 intron Trpgamma - chr2L_4_16670001 chr2L_16670001 RAL-377 639 chr2L 16695240 16695286 chr2L 16695344 16695390 4 104 5.0 4.0 4.5 0.7 150 chr2L 16695240 intron grp + chr2L 16695315 intron grp + chr2L 16695390 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-377 640 chr2L 16697072 16697254 chr2L 16697242 16697363 5 132 11.0 12.5 11.8 0.4 291 chr2L 16697072 intron grp + chr2L 16697218 intron grp + chr2L 16697363 intron,3` UTR grp +,CR44975 - chr2L_5_16695001 chr2L_16695001 RAL-377 641 chr2L 16709057 16709104 chr2L 16709161 16709208 12 104 14.5 14.0 14.2 0.8 151 chr2L 16709057 intron CG31808 - chr2L 16709132 intron CG31808 - chr2L 16709208 intron CG31808 - chr2L_12_16705001 chr2L_16705001 RAL-377 642 chr2L 16726755 16726786 chr2L 16726987 16727016 5 232 14.5 8.5 11.5 0.4 261 chr2L 16726755 intron VhaSFD - chr2L 16726886 intron VhaSFD - chr2L 16727016 exon VhaSFD - chr2L_5_16725001 chr2L_16725001 RAL-377 643 chr2L 16728905 16728957 chr2L 16729560 16729605 10 651 3.0 5.0 4.0 2.0 700 chr2L 16728905 intergenic not near genes chr2L 16729255 intergenic not near genes chr2L 16729605 intergenic CG31812 + chr2L_10_16725001 chr2L_16725001 RAL-377 644 chr2L 16764951 16764999 chr2L 16765050 16765099 5 99 17.5 16.0 16.8 0.3 148 chr2L 16764951 intergenic not near genes chr2L 16765025 intergenic not near genes chr2L 16765099 intergenic not near genes chr2L_5_16765001 chr2L_16765001 RAL-377 645 chr2L 16791202 16791245 chr2L 16791308 16791351 16 106 4.0 4.0 4.0 3.2 149 chr2L 16791202 intergenic CG17928 +,Cyt-b5-r - chr2L 16791276 intergenic CG17928 + chr2L 16791351 intergenic CG17928 + chr2L_16_16790001 chr2L_16790001 RAL-377 646 chr2L 16796068 16796107 chr2L 16796189 16796228 8 120 15.5 18.0 16.8 0.4 160 chr2L 16796068 intergenic Ugt36Ba + chr2L 16796148 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796228 intergenic Ugt36Ba +,Ugt36Bb + chr2L_8_16795001 chr2L_16795001 RAL-377 647 chr2L 16843921 16843949 chr2L 16844083 16844109 7 161 11.5 10.0 10.8 0.6 188 chr2L 16843921 exon CG13284 - chr2L 16844015 intron CG13284 - chr2L 16844109 intron CG13284 - chr2L_7_16840001 chr2L_16840001 RAL-377 648 chr2L 16847783 16847784 chr2L 16853068 16853069 4 5285 12.5 7.5 10.0 0.4 5286 chr2L 16847783 intron CG13284 - chr2L 16850426 intron CG31810 - chr2L 16853069 intergenic not near genes chr2L_4_16850001 chr2L_16850001 RAL-377 649 chr2L 16867009 16867035 chr2L 16867124 16867150 4 115 3.5 4.0 3.8 0.8 141 chr2L 16867009 intergenic not near genes chr2L 16867080 intergenic not near genes chr2L 16867150 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-377 650 chr2L 16883189 16883224 chr2L 16883413 16883448 7 224 22.0 7.0 14.5 0.5 259 chr2L 16883189 intron,intron CG31743 +,CG34313 + chr2L 16883318 intron,intron CG31743 +,CG34313 + chr2L 16883448 intron,intron CG31743 +,CG34313 + chr2L_7_16880001 chr2L_16880001 RAL-377 651 chr2L 16942935 16942954 chr2L 16943038 16943057 6 103 9.0 14.0 11.5 0.5 122 chr2L 16942935 intergenic not near genes chr2L 16942996 intergenic not near genes chr2L 16943057 intergenic not near genes chr2L_6_16940001 chr2L_16940001 RAL-377 652 chr2L 16949591 16949645 chr2L 16949695 16949749 18 103 13.5 10.0 11.8 1.4 158 chr2L 16949591 intron CR44393 - chr2L 16949670 intron CR44393 - chr2L 16949749 intron CR44393 - chr2L_18_16945001 chr2L_16945001 RAL-377 653 chr2L 16958087 16958135 chr2L 16962895 16962943 Doc 17 4807 1.0 4.0 2.5 4.9 4856 chr2L 16958087 intergenic not near genes chr2L 16960515 intergenic not near genes chr2L 16962943 intergenic not near genes chr2L_17_16960001 chr2L_16960001 RAL-377 654 chr2L 16968226 16968246 chr2L 16968336 16968356 8 110 18.0 14.5 16.2 0.5 130 chr2L 16968226 intergenic not near genes chr2L 16968291 intergenic not near genes chr2L 16968356 intergenic not near genes chr2L_8_16965001 chr2L_16965001 RAL-377 655 chr2L 16975645 16975697 chr2L 16975745 16975797 11 99 9.5 10.5 10.0 1.0 152 chr2L 16975645 intron beat-IIIb + chr2L 16975721 intron beat-IIIb + chr2L 16975797 intron beat-IIIb + chr2L_11_16975001 chr2L_16975001 RAL-377 656 chr2L 16987541 16987563 chr2L 16987637 16987659 4 96 8.5 11.0 9.8 0.4 118 chr2L 16987541 intron beat-IIIb + chr2L 16987600 intron beat-IIIb + chr2L 16987659 intron beat-IIIb + chr2L_4_16985001 chr2L_16985001 RAL-377 657 chr2L 17000102 17000143 chr2L 17000243 17000285 12 141 11.0 10.0 10.5 1.0 183 chr2L 17000102 intergenic not near genes chr2L 17000194 intergenic not near genes chr2L 17000285 intergenic not near genes chr2L_12_17000001 chr2L_17000001 RAL-377 658 chr2L 17032483 17032522 chr2L 17032588 17032627 11 105 4.0 2.0 3.0 2.8 144 chr2L 17032483 intergenic not near genes chr2L 17032555 intergenic not near genes chr2L 17032627 intergenic not near genes chr2L_11_17030001 chr2L_17030001 RAL-377 659 chr2L 17070185 17070219 chr2L 17070298 17070335 9 116 3.0 5.5 4.2 1.7 150 chr2L 17070185 intergenic not near genes chr2L 17070260 intergenic not near genes chr2L 17070335 intergenic not near genes chr2L_9_17070001 chr2L_17070001 RAL-377 660 chr2L 17087379 17087397 chr2L 17087516 17087532 7 137 5.0 9.5 7.2 0.9 153 chr2L 17087379 intergenic CG12620 + chr2L 17087456 intergenic CG12620 + chr2L 17087532 intergenic CG12620 + chr2L_7_17085001 chr2L_17085001 RAL-377 661 chr2L 17088834 17088861 chr2L 17088922 17088963 5 99 10.5 12.5 11.5 0.4 129 chr2L 17088834 3` UTR CG12620 + chr2L 17088898 3` UTR CG12620 + chr2L 17088963 3` UTR CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-377 662 chr2L 17112234 17112265 chr2L 17112332 17112363 5 98 7.0 9.0 8.0 0.6 129 chr2L 17112234 intergenic not near genes chr2L 17112298 intergenic not near genes chr2L 17112363 intergenic not near genes chr2L_5_17110001 chr2L_17110001 RAL-377 663 chr2L 17158714 17158759 chr2L 17158836 17158881 9 122 1.0 2.5 1.8 3.2 167 chr2L 17158714 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158798 intron,intron CG34106 +,beat-IIIa + chr2L 17158881 intron,intron CG34106 +,beat-IIIa + chr2L_9_17155001 chr2L_17155001 RAL-377 664 chr2L 17167545 17167592 chr2L 17167806 17167853 pogo 13 261 2.0 5.5 3.8 2.7 308 chr2L 17167545 intron,intron CG34106 +,beat-IIIa + chr2L 17167699 intron,intron CG34106 +,beat-IIIa + chr2L 17167853 intron,intron CG34106 +,beat-IIIa + chr2L_13_17165001 chr2L_17165001 RAL-377 665 chr2L 17169063 17169095 chr2L 17169169 17169201 6 106 12.5 12.5 12.5 0.4 138 chr2L 17169063 intron,intron CG34106 +,beat-IIIa + chr2L 17169132 intron,intron CG34106 +,beat-IIIa + chr2L 17169201 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-377 666 chr2L 17181424 17181475 chr2L 17181528 17181579 8 103 9.5 6.5 8.0 0.9 155 chr2L 17181424 intron Gr36c + chr2L 17181502 exon Gr36c + chr2L 17181579 exon Gr36c + chr2L_8_17180001 chr2L_17180001 RAL-377 667 chr2L 17187424 17187474 chr2L 17187615 17187665 8 190 12.0 15.0 13.5 0.6 241 chr2L 17187424 intergenic beat-IIIc - chr2L 17187544 intergenic beat-IIIc - chr2L 17187665 3` UTR beat-IIIc - chr2L_8_17185001 chr2L_17185001 RAL-377 668 chr2L 17199142 17199190 chr2L 17200629 17200677 hobo 18 1487 3.5 2.5 3.0 4.5 1535 chr2L 17199142 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200677 intron beat-IIIc - chr2L_18_17195001 chr2L_17195001 RAL-377 669 chr2L 17242593 17242643 chr2L 17242696 17242735 6 97 6.5 10.0 8.2 0.7 142 chr2L 17242593 intron beat-IIIc - chr2L 17242664 intron beat-IIIc - chr2L 17242735 intron beat-IIIc - chr2L_6_17240001 chr2L_17240001 RAL-377 670 chr2L 17264731 17264758 chr2L 17264831 17264858 5 100 13.0 12.5 12.8 0.4 127 chr2L 17264731 intergenic not near genes chr2L 17264794 intergenic not near genes chr2L 17264858 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-377 671 chr2L 17273173 17273229 chr2L 17277976 17278018 F-element 11 4799 2.5 4.5 3.5 2.4 4845 chr2L 17273173 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17278018 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-377 672 chr2L 17304971 17305004 chr2L 17305169 17305202 5 198 9.5 5.0 7.2 0.6 231 chr2L 17304971 intergenic not near genes chr2L 17305086 intergenic not near genes chr2L 17305202 intergenic not near genes chr2L_5_17305001 chr2L_17305001 RAL-377 673 chr2L 17310352 17310396 chr2L 17310465 17310495 8 112 5.0 5.0 5.0 1.3 143 chr2L 17310352 intergenic not near genes chr2L 17310424 intergenic not near genes chr2L 17310495 intergenic not near genes chr2L_8_17310001 chr2L_17310001 RAL-377 674 chr2L 17339113 17339149 chr2L 17339210 17339246 14 97 10.5 12.5 11.5 1.1 133 chr2L 17339113 intergenic not near genes chr2L 17339180 intergenic not near genes chr2L 17339246 intergenic not near genes chr2L_14_17335001 chr2L_17335001 RAL-377 675 chr2L 17343813 17343851 chr2L 17349401 17349439 8 5590 21.0 18.0 19.5 0.4 5626 chr2L 17343813 intergenic not near genes chr2L 17346626 intergenic not near genes chr2L 17349439 intergenic not near genes chr2L_8_17345001 chr2L_17345001 RAL-377 676 chr2L 17380614 17380630 chr2L 17380727 17380743 4 113 18.5 19.5 19.0 0.2 129 chr2L 17380614 intron Lrch - chr2L 17380678 intron Lrch - chr2L 17380743 intron Lrch - chr2L_4_17380001 chr2L_17380001 RAL-377 677 chr2L 17424706 17424883 chr2L 17424838 17424982 12 110 2.5 5.5 4.0 2.4 276 chr2L 17424706 intron Dif - chr2L 17424844 intron Dif - chr2L 17424982 intron Dif - chr2L_12_17420001 chr2L_17420001 RAL-377 678 chr2L 17432008 17432028 chr2L 17432135 17432155 1360 6 127 8.0 11.5 9.8 0.6 147 chr2L 17432008 intron Dif - chr2L 17432082 intron Dif - chr2L 17432155 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-377 679 chr2L 17458934 17458973 chr2L 17459031 17459063 4 95 9.5 15.0 12.2 0.3 129 chr2L 17458934 intergenic CG5050 + chr2L 17458998 intergenic CG5050 + chr2L 17459063 intergenic CG5050 + chr2L_4_17455001 chr2L_17455001 RAL-377 680 chr2L 17517841 17517876 chr2L 17517943 17517979 6 102 10.5 10.0 10.2 0.5 138 chr2L 17517841 intron Dhc36C + chr2L 17517910 intron Dhc36C + chr2L 17517979 intron Dhc36C + chr2L_6_17515001 chr2L_17515001 RAL-377 681 chr2L 17543584 17543621 chr2L 17543697 17543734 8 111 11.0 9.5 10.2 0.7 150 chr2L 17543584 intergenic not near genes chr2L 17543659 intergenic not near genes chr2L 17543734 intergenic not near genes chr2L_8_17540001 chr2L_17540001 RAL-377 682 chr2L 17564149 17564170 chr2L 17564242 17564273 4 100 13.0 9.5 11.2 0.3 124 chr2L 17564149 intergenic not near genes chr2L 17564211 intergenic not near genes chr2L 17564273 intergenic not near genes chr2L_4_17560001 chr2L_17560001 RAL-377 683 chr2L 17577715 17577737 chr2L 17577811 17577833 5 96 14.5 16.5 15.5 0.3 118 chr2L 17577715 intergenic not near genes chr2L 17577774 intergenic not near genes chr2L 17577833 intergenic not near genes chr2L_5_17575001 chr2L_17575001 RAL-377 684 chr2L 17607467 17607476 chr2L 17607584 17607594 7 118 6.0 7.5 6.8 0.9 127 chr2L 17607467 intergenic CR44412 - chr2L 17607530 intergenic CR44412 - chr2L 17607594 intergenic CR44412 - chr2L_7_17605001 chr2L_17605001 RAL-377 685 chr2L 17623347 17623393 chr2L 17623448 17623494 9 101 13.0 11.0 12.0 0.7 147 chr2L 17623347 intergenic not near genes chr2L 17623420 intergenic not near genes chr2L 17623494 intergenic not near genes chr2L_9_17620001 chr2L_17620001 RAL-377 686 chr2L 17723768 17723791 chr2L 17723881 17723904 4 113 5.5 4.5 5.0 0.7 136 chr2L 17723768 intron CadN - chr2L 17723836 intron CadN - chr2L 17723904 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-377 687 chr2L 17750900 17750950 chr2L 17751041 17751091 9 141 14.0 11.0 12.5 0.7 191 chr2L 17750900 intron CadN - chr2L 17750996 intron CadN - chr2L 17751091 intron CadN - chr2L_9_17750001 chr2L_17750001 RAL-377 688 chr2L 17765070 17765105 chr2L 17765228 17765263 4 158 11.5 7.0 9.2 0.4 193 chr2L 17765070 intron CadN - chr2L 17765166 intron CadN - chr2L 17765263 intron CadN - chr2L_4_17765001 chr2L_17765001 RAL-377 689 chr2L 17819911 17819950 chr2L 17825134 17825163 copia 5 5221 5.0 2.5 3.8 1.0 5252 chr2L 17819911 intron CadN2 - chr2L 17822537 intron CadN2 - chr2L 17825163 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-377 690 chr2L 17879977 17880028 chr2L 17880084 17880135 7 106 6.0 6.5 6.2 1.0 158 chr2L 17879977 intergenic not near genes chr2L 17880056 intergenic not near genes chr2L 17880135 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-377 691 chr2L 17891443 17891484 chr2L 17891541 17891582 9 98 7.5 9.5 8.5 0.9 139 chr2L 17891443 intergenic not near genes chr2L 17891512 intergenic not near genes chr2L 17891582 intergenic not near genes chr2L_9_17890001 chr2L_17890001 RAL-377 692 chr2L 17911948 17911987 chr2L 17914145 17914185 pogo 4 2197 4.0 6.5 5.2 0.6 2237 chr2L 17911948 intergenic not near genes chr2L 17913066 intergenic not near genes chr2L 17914185 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-377 693 chr2L 17924673 17924699 chr2L 17924812 17924838 5 139 8.5 7.5 8.0 0.6 165 chr2L 17924673 intergenic not near genes chr2L 17924756 intergenic not near genes chr2L 17924838 intergenic not near genes chr2L_5_17920001 chr2L_17920001 RAL-377 694 chr2L 17944421 17944449 chr2L 17944586 17944632 4 176 7.0 6.5 6.8 0.5 211 chr2L 17944421 intergenic not near genes chr2L 17944526 intergenic not near genes chr2L 17944632 intergenic not near genes chr2L_4_17940001 chr2L_17940001 RAL-377 695 chr2L 17951923 17951977 chr2L 17953410 17953464 hobo 17 1485 4.0 2.5 3.2 4.0 1541 chr2L 17951923 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953464 intergenic not near genes chr2L_17_17950001 chr2L_17950001 RAL-377 696 chr2L 18051882 18051902 chr2L 18061029 18061069 roo 8 9162 6.0 2.0 4.0 1.6 9187 chr2L 18051882 intron rdo + chr2L 18056476 intron rdo + chr2L 18061069 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-377 697 chr2L 18087608 18087629 chr2L 18087812 18087833 5 203 14.5 5.5 10.0 0.5 225 chr2L 18087608 intergenic not near genes chr2L 18087720 intergenic not near genes chr2L 18087833 intergenic not near genes chr2L_5_18085001 chr2L_18085001 RAL-377 698 chr2L 18110059 18110104 chr2L 18110185 18110230 5 126 14.0 11.5 12.8 0.4 171 chr2L 18110059 intergenic not near genes chr2L 18110144 intergenic not near genes chr2L 18110230 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-377 699 chr2L 18111223 18111248 chr2L 18111334 18111343 9 109 5.5 4.5 5.0 1.5 120 chr2L 18111223 intergenic not near genes chr2L 18111283 intergenic not near genes chr2L 18111343 intergenic not near genes chr2L_9_18110001 chr2L_18110001 RAL-377 700 chr2L 18138446 18138467 chr2L 18138543 18138564 6 97 14.0 14.0 14.0 0.4 118 chr2L 18138446 intergenic Socs36E -,kel - chr2L 18138505 intergenic Socs36E -,kel - chr2L 18138564 intergenic Socs36E -,kel - chr2L_6_18135001 chr2L_18135001 RAL-377 701 chr2L 18143471 18143500 chr2L 18143548 18143600 6 96 8.0 8.5 8.2 0.7 129 chr2L 18143471 intron Socs36E - chr2L 18143536 intron Socs36E - chr2L 18143600 intron Socs36E - chr2L_6_18140001 chr2L_18140001 RAL-377 702 chr2L 18159718 18159757 chr2L 18162235 18162274 10 2517 22.5 18.5 20.5 0.5 2556 chr2L 18159718 intergenic CG42750 -,CG7200 - chr2L 18160996 3` UTR CG42750 - chr2L 18162274 intron CG42750 - chr2L_10_18160001 chr2L_18160001 RAL-377 703 chr2L 18254798 18254838 chr2L 18254918 18254958 7 120 7.5 7.5 7.5 0.8 160 chr2L 18254798 intron CG42750 - chr2L 18254878 intron CG42750 - chr2L 18254958 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-377 704 chr2L 18255471 18255498 chr2L 18255576 18255603 6 104 16.5 12.0 14.2 0.4 132 chr2L 18255471 intron CG42750 - chr2L 18255537 intron CG42750 - chr2L 18255603 intron CG42750 - chr2L_6_18255001 chr2L_18255001 RAL-377 705 chr2L 18264067 18264087 chr2L 18264164 18264184 5 97 10.5 15.5 13.0 0.4 117 chr2L 18264067 intron CG42750 - chr2L 18264126 intron CG42750 - chr2L 18264184 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-377 706 chr2L 18274020 18274068 chr2L 18274126 18274174 17 105 3.5 2.0 2.8 4.5 154 chr2L 18274020 intron CG42750 - chr2L 18274097 intron CG42750 - chr2L 18274174 intron CG42750 - chr2L_17_18270001 chr2L_18270001 RAL-377 707 chr2L 18286406 18286440 chr2L 18286519 18286553 5 113 7.5 3.5 5.5 0.8 147 chr2L 18286406 intergenic not near genes chr2L 18286480 intergenic not near genes chr2L 18286553 intergenic not near genes chr2L_5_18285001 chr2L_18285001 RAL-377 708 chr2L 18291512 18291544 chr2L 18291630 18291661 7 118 13.5 9.0 11.2 0.6 149 chr2L 18291512 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291586 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291661 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_7_18290001 chr2L_18290001 RAL-377 709 chr2L 18303963 18303992 chr2L 18304074 18304103 7 111 10.0 9.0 9.5 0.7 140 chr2L 18303963 intergenic not near genes chr2L 18304033 intergenic not near genes chr2L 18304103 intergenic not near genes chr2L_7_18300001 chr2L_18300001 RAL-377 710 chr2L 18334597 18334641 chr2L 18334702 18334731 5 102 12.5 11.0 11.8 0.4 134 chr2L 18334597 intron Fas3 + chr2L 18334664 intron Fas3 + chr2L 18334731 intron Fas3 + chr2L_5_18330001 chr2L_18330001 RAL-377 711 chr2L 18408012 18408032 chr2L 18412816 18412836 Doc 8 4803 7.5 0.0 3.8 1.7 4824 chr2L 18408012 intergenic not near genes chr2L 18410424 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_8_18410001 chr2L_18410001 RAL-377 712 chr2L 18415807 18415861 chr2L 18415962 18416016 9 151 5.5 8.5 7.0 1.1 209 chr2L 18415807 intergenic not near genes chr2L 18415912 intergenic not near genes chr2L 18416016 intergenic not near genes chr2L_9_18415001 chr2L_18415001 RAL-377 713 chr2L 18443860 18443881 chr2L 18443960 18443981 7 100 8.0 7.0 7.5 0.8 121 chr2L 18443860 intergenic not near genes chr2L 18443920 intergenic not near genes chr2L 18443981 intergenic not near genes chr2L_7_18440001 chr2L_18440001 RAL-377 714 chr2L 18462341 18462477 chr2L 18462472 18462575 8 114 0.0 0.0 0.0 8.0 234 chr2L 18462341 intron let-7-C + chr2L 18462458 intron let-7-C + chr2L 18462575 intron let-7-C + chr2L_8_18460001 chr2L_18460001 RAL-377 715 chr2L 18538555 18538584 chr2L 18538657 18538685 4 102 13.5 18.5 16.0 0.2 130 chr2L 18538555 intron Pde11 - chr2L 18538620 intron Pde11 - chr2L 18538685 intron Pde11 - chr2L_4_18535001 chr2L_18535001 RAL-377 716 chr2L 18561540 18561562 chr2L 18561661 18561683 5 121 16.0 14.5 15.2 0.3 143 chr2L 18561540 intron Pde11 - chr2L 18561612 intron Pde11 - chr2L 18561683 intron Pde11 - chr2L_5_18560001 chr2L_18560001 RAL-377 717 chr2L 18568297 18568324 chr2L 18568397 18568424 5 100 11.0 7.5 9.2 0.5 127 chr2L 18568297 intron Pde11 - chr2L 18568360 intron Pde11 - chr2L 18568424 intron Pde11 - chr2L_5_18565001 chr2L_18565001 RAL-377 718 chr2L 18575609 18575613 chr2L 18575726 18575730 4 117 4.0 0.0 2.0 1.3 121 chr2L 18575609 intron Pde11 - chr2L 18575670 intron Pde11 - chr2L 18575730 intron Pde11 - chr2L_4_18575001 chr2L_18575001 RAL-377 719 chr2L 18639959 18640012 chr2L 18640571 18640624 6 612 17.5 9.0 13.2 0.4 665 chr2L 18639959 intron MESR3 + chr2L 18640292 intron MESR3 + chr2L 18640624 intron MESR3 + chr2L_6_18640001 chr2L_18640001 RAL-377 720 chr2L 18699189 18699211 chr2L 18699286 18699303 6 93 7.5 6.0 6.8 0.8 114 chr2L 18699189 exon CG10341 + chr2L 18699246 exon CG10341 + chr2L 18699303 exon CG10341 + chr2L_6_18695001 chr2L_18695001 RAL-377 721 chr2L 18745131 18745164 chr2L 18745235 18745271 7 106 8.5 12.0 10.2 0.6 140 chr2L 18745131 intergenic not near genes chr2L 18745201 intergenic not near genes chr2L 18745271 intergenic not near genes chr2L_7_18745001 chr2L_18745001 RAL-377 722 chr2L 18792045 18792083 chr2L 18792157 18792195 8 112 19.0 17.0 18.0 0.4 150 chr2L 18792045 intron ham - chr2L 18792120 intron ham - chr2L 18792195 intron ham - chr2L_8_18790001 chr2L_18790001 RAL-377 723 chr2L 18807597 18807632 chr2L 18807683 18807735 4 99 14.0 13.0 13.5 0.3 138 chr2L 18807597 intergenic not near genes chr2L 18807666 intergenic not near genes chr2L 18807735 intergenic not near genes chr2L_4_18805001 chr2L_18805001 RAL-377 724 chr2L 18822357 18822407 chr2L 18822480 18822520 4 120 14.5 13.5 14.0 0.3 163 chr2L 18822357 exon CG17324 + chr2L 18822438 exon CG17324 + chr2L 18822520 exon CG17324 + chr2L_4_18820001 chr2L_18820001 RAL-377 725 chr2L 18876845 18876883 chr2L 18876942 18876980 13 98 11.0 13.5 12.2 1.0 135 chr2L 18876845 intron tup - chr2L 18876912 intron tup - chr2L 18876980 intron tup - chr2L_13_18875001 chr2L_18875001 RAL-377 726 chr2L 18902615 18902650 chr2L 18902916 18902951 11 301 3.0 5.0 4.0 2.2 336 chr2L 18902615 intergenic not near genes chr2L 18902783 intergenic not near genes chr2L 18902951 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-377 727 chr2L 18903075 18903119 chr2L 18903192 18903230 7 114 9.0 6.0 7.5 0.8 155 chr2L 18903075 intergenic not near genes chr2L 18903152 intergenic not near genes chr2L 18903230 intergenic not near genes chr2L_7_18900001 chr2L_18900001 RAL-377 728 chr2L 18926567 18926591 chr2L 18926694 18926718 11 127 1.0 3.0 2.0 3.7 151 chr2L 18926567 intron ssp3 - chr2L 18926642 intron ssp3 - chr2L 18926718 intron ssp3 - chr2L_11_18925001 chr2L_18925001 RAL-377 729 chr2L 18955259 18955264 chr2L 18955402 18955407 4 143 7.0 9.0 8.0 0.4 148 chr2L 18955259 intergenic CG10623 -,CR44741 + chr2L 18955333 intergenic CG10623 -,CR44741 + chr2L 18955407 intergenic CG10623 -,CR44741 + chr2L_4_18955001 chr2L_18955001 RAL-377 730 chr2L 18141268 18141268 chr2L 18997150 18997150 5 855882 20.5 25.0 22.8 0.2 855882 chr2L 18141268 intron Socs36E - chr2L 18569209 intron Pde11 - chr2L 18997150 intergenic CG31792 + chr2L_5_18565001 chr2L_18565001 RAL-377 731 chr2L 19001105 19001144 chr2L 19001201 19001240 4 90 9.0 10.0 9.5 0.4 135 chr2L 19001105 exon CG31792 + chr2L 19001172 exon CG31792 + chr2L 19001240 exon CG31792 + chr2L_4_19000001 chr2L_19000001 RAL-377 732 chr2L 19070248 19070295 chr2L 19070361 19070408 6 110 8.5 10.5 9.5 0.6 160 chr2L 19070248 intergenic CG10702 - chr2L 19070328 intergenic CG10702 - chr2L 19070408 intergenic not near genes chr2L_6_19070001 chr2L_19070001 RAL-377 733 chr2L 19146798 19146847 chr2L 19146897 19146926 10 97 14.0 16.0 15.0 0.6 128 chr2L 19146798 intron brat + chr2L 19146862 intron brat + chr2L 19146926 intron brat + chr2L_10_19145001 chr2L_19145001 RAL-377 734 chr2L 19147367 19147401 chr2L 19154403 19154456 297 9 7049 4.0 5.0 4.5 1.6 7089 chr2L 19147367 intron brat + chr2L 19150912 intron brat + chr2L 19154456 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-377 735 chr2L 19237301 19237338 chr2L 19237421 19237423 7 114 3.5 6.5 5.0 1.2 122 chr2L 19237301 intergenic not near genes chr2L 19237362 intergenic not near genes chr2L 19237423 intergenic not near genes chr2L_7_19235001 chr2L_19235001 RAL-377 736 chr2L 19345016 19345045 chr2L 19357245 19357273 blood 10 12227 3.0 8.5 5.8 1.5 12257 chr2L 19345016 intron dnt - chr2L 19351144 intron dnt - chr2L 19357273 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-377 737 chr2L 19357525 19357566 chr2L 19357635 19357675 14 108 3.5 4.0 3.8 2.9 150 chr2L 19357525 intron dnt - chr2L 19357600 intron dnt - chr2L 19357675 intron dnt - chr2L_14_19355001 chr2L_19355001 RAL-377 738 chr2L 19374477 19374519 chr2L 19374606 19374631 11 126 3.0 4.0 3.5 2.4 154 chr2L 19374477 intergenic not near genes chr2L 19374554 intergenic not near genes chr2L 19374631 intergenic not near genes chr2L_11_19370001 chr2L_19370001 RAL-377 739 chr2L 19405603 19405619 chr2L 19405713 19405729 10 109 12.0 1.0 6.5 1.3 126 chr2L 19405603 intron Pax - chr2L 19405666 intron Pax - chr2L 19405729 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-377 740 chr2L 19407696 19407739 chr2L 19407913 19407956 6 216 12.5 13.5 13.0 0.4 260 chr2L 19407696 intron Pax - chr2L 19407826 intron Pax - chr2L 19407956 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-377 741 chr2L 19437506 19437523 chr2L 19437618 19437634 6 112 12.0 3.5 7.8 0.7 128 chr2L 19437506 intron CG10237 - chr2L 19437570 intron CG10237 - chr2L 19437634 intron CG10237 - chr2L_6_19435001 chr2L_19435001 RAL-377 742 chr2L 19487202 19487236 chr2L 19487309 19487345 9 107 17.5 11.5 14.5 0.6 143 chr2L 19487202 intergenic CG13083 + chr2L 19487274 intergenic CG13083 + chr2L 19487345 intergenic CG13083 + chr2L_9_19485001 chr2L_19485001 RAL-377 743 chr2L 19520161 19520191 chr2L 19520260 19520290 10 99 14.5 15.5 15.0 0.6 129 chr2L 19520161 intron CG10132 + chr2L 19520226 intron CG10132 + chr2L 19520290 intron CG10132 + chr2L_10_19520001 chr2L_19520001 RAL-377 744 chr2L 19543104 19543156 chr2L 19543208 19543259 16 103 11.0 9.5 10.2 1.4 155 chr2L 19543104 intron ref(2)P + chr2L 19543182 intron ref(2)P + chr2L 19543259 intron ref(2)P + chr2L_16_19540001 chr2L_19540001 RAL-377 745 chr2L 19559985 19560007 chr2L 19560258 19560280 9 273 13.0 14.0 13.5 0.6 295 chr2L 19559985 exon Tep5 + chr2L 19560132 exon Tep5 + chr2L 19560280 intron Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-377 746 chr2L 19560816 19560852 chr2L 19560916 19560951 10 100 14.5 12.5 13.5 0.7 135 chr2L 19560816 exon Tep5 + chr2L 19560884 exon Tep5 + chr2L 19560951 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-377 747 chr2L 19620084 19620125 chr2L 19621093 19621124 jockey 5 1001 5.0 5.0 5.0 0.8 1040 chr2L 19620084 intron Lar + chr2L 19620604 intron Lar + chr2L 19621124 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-377 748 chr2L 19638524 19638570 chr2L 19638625 19638678 13 106 2.0 6.0 4.0 2.6 154 chr2L 19638524 intron Lar + chr2L 19638601 intron Lar + chr2L 19638678 intron Lar + chr2L_13_19635001 chr2L_19635001 RAL-377 749 chr2L 19652552 19652566 chr2L 19674008 19674012 opus 9 21454 10.5 3.0 6.8 1.2 21460 chr2L 19652552 intron Lar + chr2L 19663282 intron Lar + chr2L 19674012 intron Lar + chr2L_9_19660001 chr2L_19660001 RAL-377 750 chr2L 19652568 19652598 chr2L 19674004 19674052 opus 7 21452 6.0 2.5 4.2 1.3 21484 chr2L 19652568 intron Lar + chr2L 19663310 intron Lar + chr2L 19674052 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-377 751 chr2L 19681431 19681467 chr2L 19681529 19681566 4 99 6.0 8.0 7.0 0.5 135 chr2L 19681431 intron Lar + chr2L 19681498 intron Lar + chr2L 19681566 intron Lar + chr2L_4_19680001 chr2L_19680001 RAL-377 752 chr2L 19703516 19703569 chr2L 19712672 19712708 roo 24 9152 7.0 5.0 6.0 3.4 9192 chr2L 19703516 intron Lar + chr2L 19708112 intron Lar + chr2L 19712708 intron Lar + chr2L_24_19705001 chr2L_19705001 RAL-377 753 chr2L 19721068 19721099 chr2L 19721403 19721434 11 334 17.5 14.0 15.8 0.7 366 chr2L 19721068 intron Lar + chr2L 19721251 intron Lar + chr2L 19721434 intron Lar + chr2L_11_19720001 chr2L_19720001 RAL-377 754 chr2L 19762790 19762836 chr2L 19763052 19763098 pogo 17 261 5.5 7.5 6.5 2.3 308 chr2L 19762790 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763098 intron fbp - chr2L_17_19760001 chr2L_19760001 RAL-377 755 chr2L 19803877 19803913 chr2L 19804604 19804640 5 727 13.5 17.5 15.5 0.3 763 chr2L 19803877 intron sick + chr2L 19804258 intron sick + chr2L 19804640 intron sick + chr2L_5_19800001 chr2L_19800001 RAL-377 756 chr2L 19823247 19823294 chr2L 19823348 19823403 5 105 14.5 11.5 13.0 0.4 156 chr2L 19823247 intron sick + chr2L 19823325 intron sick + chr2L 19823403 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-377 757 chr2L 19824409 19824429 chr2L 19824512 19824532 8 103 2.0 8.0 5.0 1.3 123 chr2L 19824409 intron sick + chr2L 19824470 intron sick + chr2L 19824532 intron sick + chr2L_8_19820001 chr2L_19820001 RAL-377 758 chr2L 19834100 19834148 chr2L 19834546 19834593 8 446 10.5 13.0 11.8 0.6 493 chr2L 19834100 intron sick + chr2L 19834346 intron sick + chr2L 19834593 intron sick + chr2L_8_19830001 chr2L_19830001 RAL-377 759 chr2L 19837273 19837301 chr2L 19837362 19837401 4 97 5.5 2.5 4.0 0.8 128 chr2L 19837273 intron sick + chr2L 19837337 intron sick + chr2L 19837401 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-377 760 chr2L 19844117 19844163 chr2L 19844215 19844261 6 98 9.5 8.0 8.8 0.6 144 chr2L 19844117 intron sick + chr2L 19844189 intron sick + chr2L 19844261 intron sick + chr2L_6_19840001 chr2L_19840001 RAL-377 761 chr2L 19864859 19864908 chr2L 19865139 19865187 5 278 15.0 14.0 14.5 0.3 328 chr2L 19864859 intron sick + chr2L 19865023 intron sick + chr2L 19865187 intron sick + chr2L_5_19865001 chr2L_19865001 RAL-377 762 chr2L 19884952 19884958 chr2L 19885043 19885056 6 96 7.5 8.5 8.0 0.7 104 chr2L 19884952 intron sick + chr2L 19885004 intron sick + chr2L 19885056 intron sick + chr2L_6_19885001 chr2L_19885001 RAL-377 763 chr2L 19907367 19907391 chr2L 19907491 19907515 9 123 9.0 10.0 9.5 0.9 148 chr2L 19907367 intron sick + chr2L 19907441 intron sick + chr2L 19907515 intron sick + chr2L_9_19905001 chr2L_19905001 RAL-377 764 chr2L 19926816 19926860 chr2L 19926938 19926982 9 122 6.5 11.5 9.0 0.9 166 chr2L 19926816 intron sick + chr2L 19926899 intron sick + chr2L 19926982 intron sick + chr2L_9_19925001 chr2L_19925001 RAL-377 765 chr2L 19950949 19950986 chr2L 19951415 19951446 6 458 9.0 5.5 7.2 0.7 497 chr2L 19950949 intron sick + chr2L 19951198 intron sick + chr2L 19951446 intron sick + chr2L_6_19950001 chr2L_19950001 RAL-377 766 chr2L 19972910 19972963 chr2L 19973018 19973071 10 107 8.5 10.0 9.2 1.0 161 chr2L 19972910 intron CG43861 - chr2L 19972990 intron CG43861 - chr2L 19973071 intron CG43861 - chr2L_10_19970001 chr2L_19970001 RAL-377 767 chr2L 20005856 20005901 chr2L 20010952 20010997 flea 19 5095 7.0 5.0 6.0 2.7 5141 chr2L 20005856 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010997 intron CG43861 - chr2L_19_20005001 chr2L_20005001 RAL-377 768 chr2L 20015934 20015965 chr2L 20016077 20016108 9 142 12.0 10.0 11.0 0.8 174 chr2L 20015934 intron CG43861 - chr2L 20016021 intron CG43861 - chr2L 20016108 intron CG43861 - chr2L_9_20015001 chr2L_20015001 RAL-377 769 chr2L 20022069 20022099 chr2L 20022202 20022230 7 132 17.5 16.0 16.8 0.4 161 chr2L 20022069 intergenic not near genes chr2L 20022150 intergenic not near genes chr2L 20022230 intergenic not near genes chr2L_7_20020001 chr2L_20020001 RAL-377 770 chr2L 20036514 20036559 chr2L 20036618 20036663 14 103 4.5 6.5 5.5 2.2 149 chr2L 20036514 intron sNPF + chr2L 20036588 intron sNPF + chr2L 20036663 intron sNPF + chr2L_14_20035001 chr2L_20035001 RAL-377 771 chr2L 20041410 20041456 chr2L 20041515 20041559 14 100 6.5 4.5 5.5 2.2 149 chr2L 20041410 intron sNPF + chr2L 20041484 intron sNPF + chr2L 20041559 intron sNPF + chr2L_14_20040001 chr2L_20040001 RAL-377 772 chr2L 20079496 20079546 chr2L 20079637 20079687 23 140 7.0 0.0 3.5 5.1 191 chr2L 20079496 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079687 intron,intron neb +,fok - chr2L_23_20075001 chr2L_20075001 RAL-377 773 chr2L 20085465 20085499 chr2L 20085567 20085579 9 104 6.0 8.5 7.2 1.1 114 chr2L 20085465 intron neb + chr2L 20085522 intron neb + chr2L 20085579 intron neb + chr2L_9_20085001 chr2L_20085001 RAL-377 774 chr2L 20087247 20087262 chr2L 20087363 20087378 6 116 5.5 6.5 6.0 0.9 131 chr2L 20087247 intron neb + chr2L 20087312 intron neb + chr2L 20087378 intron neb + chr2L_6_20085001 chr2L_20085001 RAL-377 775 chr2L 20087266 20087276 chr2L 20087360 20087392 7 111 3.0 6.5 4.8 1.2 126 chr2L 20087266 intron neb + chr2L 20087329 intron neb + chr2L 20087392 intron neb + chr2L_7_20085001 chr2L_20085001 RAL-377 776 chr2L 20127463 20127516 chr2L 20127710 20127763 20 246 13.0 10.5 11.8 1.6 300 chr2L 20127463 intergenic not near genes chr2L 20127613 intergenic not near genes chr2L 20127763 intergenic not near genes chr2L_20_20125001 chr2L_20125001 RAL-377 777 chr2L 20236488 20236537 chr2L 20236584 20236632 16 96 11.0 11.5 11.2 1.3 144 chr2L 20236488 intergenic not near genes chr2L 20236560 intergenic not near genes chr2L 20236632 intergenic not near genes chr2L_16_20235001 chr2L_20235001 RAL-377 778 chr2L 20272107 20272135 chr2L 20282837 20282866 copia 9 10729 5.5 5.0 5.2 1.5 10759 chr2L 20272107 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282866 intergenic not near genes chr2L_9_20275001 chr2L_20275001 RAL-377 779 chr2L 20296487 20296539 chr2L 20296588 20296640 14 100 1.0 2.5 1.8 5.0 153 chr2L 20296487 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296640 intergenic CR43414 - chr2L_14_20295001 chr2L_20295001 RAL-377 780 chr2L 20299403 20299439 chr2L 20299546 20299582 8 137 0.0 3.5 1.8 2.9 179 chr2L 20299403 intergenic not near genes chr2L 20299492 intergenic not near genes chr2L 20299582 intergenic not near genes chr2L_8_20295001 chr2L_20295001 RAL-377 781 chr2L 20299989 20300019 chr2L 20300090 20300108 5 96 5.5 4.0 4.8 0.9 119 chr2L 20299989 intergenic not near genes chr2L 20300048 intergenic not near genes chr2L 20300108 intergenic not near genes chr2L_5_20300001 chr2L_20300001 RAL-377 782 chr2L 20303162 20303191 chr2L 20310636 20310679 blood 11 7487 1.5 10.0 5.8 1.6 7517 chr2L 20303162 intergenic not near genes chr2L 20306920 intergenic not near genes chr2L 20310679 intergenic not near genes chr2L_11_20305001 chr2L_20305001 RAL-377 783 chr2L 20310878 20310891 chr2L 20310978 20310991 7 100 12.0 8.0 10.0 0.6 113 chr2L 20310878 intergenic spir + chr2L 20310934 intergenic spir + chr2L 20310991 intergenic spir + chr2L_7_20310001 chr2L_20310001 RAL-377 784 chr2L 20326565 20326601 chr2L 20326666 20326698 5 101 12.0 8.0 10.0 0.5 133 chr2L 20326565 intron spir + chr2L 20326632 intron spir + chr2L 20326698 intron spir + chr2L_5_20325001 chr2L_20325001 RAL-377 785 chr2L 20327227 20327249 chr2L 20327325 20327346 4 97 5.5 10.5 8.0 0.4 119 chr2L 20327227 intron spir + chr2L 20327286 intron spir + chr2L 20327346 intron spir + chr2L_4_20325001 chr2L_20325001 RAL-377 786 chr2L 20371027 20371064 chr2L 20371146 20371183 11 119 16.0 14.5 15.2 0.7 156 chr2L 20371027 intergenic not near genes chr2L 20371105 intergenic not near genes chr2L 20371183 intergenic not near genes chr2L_11_20370001 chr2L_20370001 RAL-377 787 chr2L 20372199 20372254 chr2L 20372469 20372515 pogo 15 269 0.5 7.5 4.0 3.0 316 chr2L 20372199 intergenic Ugt37a1 - chr2L 20372357 intergenic Ugt37a1 - chr2L 20372515 exon Ugt37a1 - chr2L_15_20370001 chr2L_20370001 RAL-377 788 chr2L 20393769 20393788 chr2L 20393955 20393969 4 184 15.5 13.5 14.5 0.3 200 chr2L 20393769 intron CG10947 - chr2L 20393869 intron CG10947 - chr2L 20393969 intron CG10947 - chr2L_4_20390001 chr2L_20390001 RAL-377 789 chr2L 20424035 20424070 chr2L 20424140 20424175 8 104 12.0 13.5 12.8 0.6 140 chr2L 20424035 intron CG15130 - chr2L 20424105 intron CG15130 - chr2L 20424175 intron CG15130 - chr2L_8_20420001 chr2L_20420001 RAL-377 790 chr2L 20468361 20468397 chr2L 20468486 20468522 INE-1 6 124 17.0 14.5 15.8 0.4 161 chr2L 20468361 intron CR44980 - chr2L 20468442 intron CR44980 - chr2L 20468522 intron CR44980 - chr2L_6_20465001 chr2L_20465001 RAL-377 791 chr2L 20498672 20498708 chr2L 20498791 20498827 13 119 6.0 8.5 7.2 1.6 155 chr2L 20498672 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498827 intergenic not near genes chr2L_13_20495001 chr2L_20495001 RAL-377 792 chr2L 20524169 20524191 chr2L 20524271 20524293 5 102 4.5 0.0 2.2 1.6 124 chr2L 20524169 intergenic not near genes chr2L 20524231 intergenic not near genes chr2L 20524293 intergenic not near genes chr2L_5_20520001 chr2L_20520001 RAL-377 793 chr2L 20546023 20546070 chr2L 20546120 20546167 5 97 10.5 12.0 11.2 0.4 144 chr2L 20546023 intergenic not near genes chr2L 20546095 intergenic not near genes chr2L 20546167 intergenic not near genes chr2L_5_20545001 chr2L_20545001 RAL-377 794 chr2L 20549124 20549141 chr2L 20549225 20549243 6 101 7.5 8.5 8.0 0.7 119 chr2L 20549124 intergenic not near genes chr2L 20549184 intergenic not near genes chr2L 20549243 intergenic not near genes chr2L_6_20545001 chr2L_20545001 RAL-377 795 chr2L 20553167 20553216 chr2L 20553263 20553312 17 94 3.5 2.5 3.0 4.2 145 chr2L 20553167 intergenic not near genes chr2L 20553240 intergenic not near genes chr2L 20553312 intergenic not near genes chr2L_17_20550001 chr2L_20550001 RAL-377 796 chr2L 20567316 20567356 chr2L 20567468 20567508 6 150 10.5 8.5 9.5 0.6 192 chr2L 20567316 intron CR45347 + chr2L 20567412 intron CR45347 + chr2L 20567508 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-377 797 chr2L 20568642 20568675 chr2L 20569052 20569086 X-element 8 410 7.0 2.0 4.5 1.5 444 chr2L 20568642 intron CR45347 + chr2L 20568864 intron CR45347 + chr2L 20569086 intron CR45347 + chr2L_8_20565001 chr2L_20565001 RAL-377 798 chr2L 20576197 20576251 chr2L 20583685 20583727 blood 12 7485 5.5 5.5 5.5 1.8 7530 chr2L 20576197 intergenic CR45347 + chr2L 20579962 intergenic not near genes chr2L 20583727 3` UTR CR44909 - chr2L_12_20575001 chr2L_20575001 RAL-377 799 chr2L 20601768 20601804 chr2L 20601866 20601902 4 98 12.0 13.5 12.8 0.3 134 chr2L 20601768 intron CR44909 - chr2L 20601835 intron CR44909 - chr2L 20601902 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-377 800 chr2L 20625640 20625680 chr2L 20625903 20625943 11 260 11.0 6.0 8.5 1.2 303 chr2L 20625640 intron CR44909 - chr2L 20625792 3` UTR CR44909 - chr2L 20625943 3` UTR CR44909 - chr2L_11_20625001 chr2L_20625001 RAL-377 801 chr2L 20668669 20668718 chr2L 20668764 20668814 12 96 14.5 11.5 13.0 0.9 145 chr2L 20668669 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668814 intron CG31678 - chr2L_12_20665001 chr2L_20665001 RAL-377 802 chr2L 20674811 20674855 chr2L 20674916 20674953 4 100 16.5 15.0 15.8 0.2 142 chr2L 20674811 intron CG31678 - chr2L 20674882 intron CG31678 - chr2L 20674953 intron CG31678 - chr2L_4_20670001 chr2L_20670001 RAL-377 803 chr2L 20801374 20801420 chr2L 20801470 20801516 12 95 10.0 8.5 9.2 1.2 142 chr2L 20801374 intron CG9328 + chr2L 20801445 intron CG9328 + chr2L 20801516 intron CG9328 + chr2L_12_20800001 chr2L_20800001 RAL-377 804 chr2L 20818229 20818280 chr2L 20818676 20818727 12 445 14.0 20.0 17.0 0.7 498 chr2L 20818229 intron CheB38a - chr2L 20818478 exon CheB38a - chr2L 20818727 intergenic CheB38a - chr2L_12_20815001 chr2L_20815001 RAL-377 805 chr2L 20819091 20819143 chr2L 20819195 20819247 9 104 8.5 12.0 10.2 0.8 156 chr2L 20819091 intergenic not near genes chr2L 20819169 intergenic not near genes chr2L 20819247 intergenic not near genes chr2L_9_20815001 chr2L_20815001 RAL-377 806 chr2L 20821479 20821522 chr2L 20821647 20821690 11 168 4.5 1.5 3.0 2.8 211 chr2L 20821479 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821690 intergenic not near genes chr2L_11_20820001 chr2L_20820001 RAL-377 807 chr2L 20835789 20835834 chr2L 20836526 20836570 Quasimodo 18 737 6.0 2.0 4.0 3.6 781 chr2L 20835789 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836570 intergenic Spn38F - chr2L_18_20835001 chr2L_20835001 RAL-377 808 chr2L 20840010 20840058 chr2L 20840240 20840290 10 229 14.5 9.0 11.8 0.8 280 chr2L 20840010 intergenic not near genes chr2L 20840150 intergenic not near genes chr2L 20840290 intergenic CG31676 + chr2L_10_20840001 chr2L_20840001 RAL-377 809 chr2L 20879792 20879839 chr2L 20879895 20879942 8 102 12.0 9.5 10.8 0.7 150 chr2L 20879792 intron,intron CG43739 -,sky - chr2L 20879867 intron,intron CG43739 -,sky - chr2L 20879942 intron,intron CG43739 -,sky - chr2L_8_20875001 chr2L_20875001 RAL-377 810 chr2L 20891515 20891545 chr2L 20896636 20896666 jockey 11 5121 2.0 5.5 3.8 2.3 5151 chr2L 20891515 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896666 intron,intron CG43739 -,sky - chr2L_11_20890001 chr2L_20890001 RAL-377 811 chr2L 20935928 20935973 chr2L 20937017 20937060 5 1088 14.5 19.0 16.8 0.3 1132 chr2L 20935928 intergenic not near genes chr2L 20936494 intergenic not near genes chr2L 20937060 intergenic not near genes chr2L_5_20935001 chr2L_20935001 RAL-377 812 chr2L 20946924 20946960 chr2L 20947031 20947066 7 106 11.0 4.0 7.5 0.8 142 chr2L 20946924 intergenic CR44606 - chr2L 20946995 intergenic CR44606 - chr2L 20947066 intergenic CR44606 - chr2L_7_20945001 chr2L_20945001 RAL-377 813 chr2L 20967064 20967102 chr2L 20967170 20967201 7 104 11.5 11.5 11.5 0.6 137 chr2L 20967064 3` UTR CG42238 - chr2L 20967132 3` UTR CG42238 - chr2L 20967201 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-377 814 chr2L 20976633 20976661 chr2L 20981468 20981496 X-element 10 4834 5.0 4.0 4.5 1.8 4863 chr2L 20976633 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981496 intron CG42238 - chr2L_10_20975001 chr2L_20975001 RAL-377 815 chr2L 20991018 20991064 chr2L 20991116 20991162 6 97 9.0 7.5 8.2 0.7 144 chr2L 20991018 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991162 intron CG42238 - chr2L_6_20990001 chr2L_20990001 RAL-377 816 chr2L 21020256 21020306 chr2L 21023953 21024003 NOF 17 3694 6.0 4.0 5.0 2.8 3747 chr2L 21020256 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21024003 intron CG42238 - chr2L_17_21020001 chr2L_21020001 RAL-377 817 chr2L 21041124 21041162 chr2L 21049405 21049443 Tirant 10 8276 7.5 5.0 6.2 1.4 8319 chr2L 21041124 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049443 intron CG42238 - chr2L_10_21045001 chr2L_21045001 RAL-377 818 chr2L 21111621 21111664 chr2L 21112048 21112091 16 427 12.5 15.0 13.8 1.1 470 chr2L 21111621 intron Nhe2 + chr2L 21111856 intron Nhe2 + chr2L 21112091 intron Nhe2 + chr2L_16_21110001 chr2L_21110001 RAL-377 819 chr2L 21119268 21119313 chr2L 21119372 21119417 10 102 16.0 15.5 15.8 0.6 149 chr2L 21119268 intron Nhe2 + chr2L 21119342 intron Nhe2 + chr2L 21119417 intron Nhe2 + chr2L_10_21115001 chr2L_21115001 RAL-377 820 chr2L 21199223 21199256 chr2L 21199318 21199353 8 97 15.0 16.5 15.8 0.5 130 chr2L 21199223 intergenic CG31624 -,Ret - chr2L 21199288 3` UTR CG31624 - chr2L 21199353 3` UTR CG31624 - chr2L_8_21195001 chr2L_21195001 RAL-377 821 chr2L 21215634 21215683 chr2L 21215730 21215779 10 95 14.0 16.0 15.0 0.6 145 chr2L 21215634 intron Atg18b - chr2L 21215706 intron Atg18b - chr2L 21215779 intron Atg18b - chr2L_10_21215001 chr2L_21215001 RAL-377 822 chr2L 21218963 21219006 chr2L 21219257 21219300 9 294 18.0 17.0 17.5 0.5 337 chr2L 21218963 intron Atg18b - chr2L 21219132 intron Atg18b - chr2L 21219300 intron Atg18b - chr2L_9_21215001 chr2L_21215001 RAL-377 823 chr2L 21246494 21246541 chr2L 21246604 21246656 12 110 4.5 4.0 4.2 2.3 162 chr2L 21246494 intron Hr39 + chr2L 21246575 intron Hr39 + chr2L 21246656 intron Hr39 + chr2L_12_21245001 chr2L_21245001 RAL-377 824 chr2L 21286584 21286621 chr2L 21286682 21286720 16 98 5.5 5.5 5.5 2.5 136 chr2L 21286584 exon Mio - chr2L 21286652 intron Mio - chr2L 21286720 intron Mio - chr2L_16_21285001 chr2L_21285001 RAL-377 825 chr2L 21307452 21307488 chr2L 21307554 21307590 6 102 10.5 12.0 11.2 0.5 138 chr2L 21307452 intron Mio - chr2L 21307521 intron Mio - chr2L 21307590 intron Mio - chr2L_6_21305001 chr2L_21305001 RAL-377 826 chr2L 21323414 21323433 chr2L 21323522 21323541 7 108 5.0 5.5 5.2 1.1 127 chr2L 21323414 intergenic not near genes chr2L 21323478 intergenic not near genes chr2L 21323541 intergenic not near genes chr2L_7_21320001 chr2L_21320001 RAL-377 827 chr2L 21323908 21323920 chr2L 21324007 21324019 4 97 8.0 20.0 14.0 0.3 111 chr2L 21323908 intergenic not near genes chr2L 21323964 intergenic not near genes chr2L 21324019 intergenic not near genes chr2L_4_21320001 chr2L_21320001 RAL-377 828 chr2L 21333111 21333164 chr2L 21333228 21333280 5 116 7.0 4.5 5.8 0.7 169 chr2L 21333111 intron dimm + chr2L 21333196 intron dimm + chr2L 21333280 intron dimm + chr2L_5_21330001 chr2L_21330001 RAL-377 829 chr2L 21333608 21333636 chr2L 21333765 21333801 5 161 9.0 9.0 9.0 0.5 193 chr2L 21333608 intron dimm + chr2L 21333704 intron dimm + chr2L 21333801 intron dimm + chr2L_5_21330001 chr2L_21330001 RAL-377 830 chr2L 21347531 21347579 chr2L 21355023 21355070 blood 15 7491 6.0 4.0 5.0 2.5 7539 chr2L 21347531 intron Tsp39D + chr2L 21351300 intron Tsp39D + chr2L 21355070 intron Tsp39D + chr2L_15_21350001 chr2L_21350001 RAL-377 831 chr2L 21355586 21355632 chr2L 21355751 21355797 9 165 11.0 15.0 13.0 0.6 211 chr2L 21355586 exon Tsp39D + chr2L 21355692 intron Tsp39D + chr2L 21355797 intron Tsp39D + chr2L_9_21355001 chr2L_21355001 RAL-377 832 chr2L 21372112 21372136 chr2L 21372405 21372429 5 293 21.0 13.5 17.2 0.3 317 chr2L 21372112 intron CG8665 + chr2L 21372270 intron CG8665 + chr2L 21372429 intron CG8665 + chr2L_5_21370001 chr2L_21370001 RAL-377 833 chr2L 21377392 21377428 chr2L 21377489 21377525 8 97 13.5 12.0 12.8 0.6 133 chr2L 21377392 3` UTR CG8665 + chr2L 21377458 3` UTR CG8665 + chr2L 21377525 3` UTR CG8665 + chr2L_8_21375001 chr2L_21375001 RAL-377 834 chr2L 21597026 21597051 chr2L 21604790 21604815 roo 9 7764 4.5 7.5 6.0 1.3 7789 chr2L 21597026 intergenic not near genes chr2L 21600920 intergenic not near genes chr2L 21604815 intergenic not near genes chr2L_9_21600001 chr2L_21600001 RAL-377 835 chr2L 21691810 21691856 chr2L 21698300 21698345 Burdock 15 6490 10.5 0.0 5.2 2.4 6535 chr2L 21691810 intron CG31619 + chr2L 21695078 intron CG31619 + chr2L 21698345 intron CG31619 + chr2L_15_21695001 chr2L_21695001 RAL-377 836 chr2L 21750089 21750128 chr2L 21750429 21750471 4 341 16.0 17.0 16.5 0.2 382 chr2L 21750089 intron step - chr2L 21750280 intron step - chr2L 21750471 intron step - chr2L_4_21750001 chr2L_21750001 RAL-377 837 chr2L 21769942 21769979 chr2L 21770043 21770077 10 100 18.0 14.0 16.0 0.6 135 chr2L 21769942 intron CG31612 - chr2L 21770010 intron CG31612 - chr2L 21770077 intron CG31612 - chr2L_10_21770001 chr2L_21770001 RAL-377 838 chr2L 21806205 21806256 chr2L 21806328 21806379 16 122 14.5 11.5 13.0 1.1 174 chr2L 21806205 intergenic not near genes chr2L 21806292 intergenic not near genes chr2L 21806379 intergenic not near genes chr2L_16_21805001 chr2L_21805001 RAL-377 839 chr2L 21825225 21825239 chr2L 21825341 21825355 6 116 13.5 14.5 14.0 0.4 130 chr2L 21825225 intergenic not near genes chr2L 21825290 intergenic not near genes chr2L 21825355 intergenic not near genes chr2L_6_21825001 chr2L_21825001 RAL-377 840 chr2L 21963758 21963801 chr2L 21963856 21963898 7 97 13.5 9.0 11.2 0.6 140 chr2L 21963758 intergenic not near genes chr2L 21963828 intergenic not near genes chr2L 21963898 intergenic not near genes chr2L_7_21960001 chr2L_21960001 RAL-377 841 chr2L 21981665 21981711 chr2L 21990850 21990885 roo 15 9184 3.5 4.0 3.8 3.1 9220 chr2L 21981665 exon CG2528 - chr2L 21986275 intron CG2528 - chr2L 21990885 exon CG2528 - chr2L_15_21985001 chr2L_21985001 RAL-377 842 chr2L 21996942 21996974 chr2L 21997043 21997075 7 101 15.0 14.0 14.5 0.5 133 chr2L 21996942 intergenic not near genes chr2L 21997008 intergenic not near genes chr2L 21997075 intergenic not near genes chr2L_7_21995001 chr2L_21995001 RAL-377 843 chr2L 22001631 22001666 chr2L 22001727 22001762 18 96 5.0 3.5 4.2 3.5 131 chr2L 22001631 intergenic not near genes chr2L 22001696 intergenic not near genes chr2L 22001762 intergenic not near genes chr2L_18_22000001 chr2L_22000001 RAL-377 844 chr2L 22101469 22101493 chr2L 22101802 22101809 8 331 16.5 10.5 13.5 0.6 340 chr2L 22101469 intergenic not near genes chr2L 22101639 intergenic not near genes chr2L 22101809 intergenic not near genes chr2L_8_22100001 chr2L_22100001 RAL-377 845 chr2L 22130856 22130876 chr2L 22130975 22130995 4 119 16.5 17.0 16.8 0.2 139 chr2L 22130856 intergenic CR43241 + chr2L 22130926 intergenic CR43241 + chr2L 22130995 intergenic CR43241 + chr2L_4_22130001 chr2L_22130001 RAL-377 846 chr2L 22179520 22179559 chr2L 22179617 22179656 12 96 17.5 16.5 17.0 0.7 136 chr2L 22179520 intron CG3635 + chr2L 22179588 intron CG3635 + chr2L 22179656 intron CG3635 + chr2L_12_22175001 chr2L_22175001 RAL-377 847 chr2L 22192006 22192059 chr2L 22192114 22192167 5 108 12.5 14.5 13.5 0.3 161 chr2L 22192006 intron Ir40a - chr2L 22192086 intron Ir40a - chr2L 22192167 intron Ir40a - chr2L_5_22190001 chr2L_22190001 RAL-377 848 chr2L 22258600 22258644 chr2L 22260744 22260788 G6 14 2145 4.5 2.5 3.5 3.1 2188 chr2L 22258600 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260788 intergenic not near genes chr2L_14_22255001 chr2L_22255001 RAL-377 849 chr2L 22319146 22319189 chr2L 22319291 22319323 11 138 10.0 9.5 9.8 1.0 177 chr2L 22319146 intron CG17018 + chr2L 22319234 intron CG17018 + chr2L 22319323 intron CG17018 + chr2L_11_22315001 chr2L_22315001 RAL-377 850 chr2L 22325292 22325334 chr2L 22325378 22325431 7 95 11.5 14.5 13.0 0.5 139 chr2L 22325292 intron CG17018 + chr2L 22325362 intron CG17018 + chr2L 22325431 intron CG17018 + chr2L_7_22325001 chr2L_22325001 RAL-377 851 chr2L 22343793 22343829 chr2L 22344254 22344285 6 460 9.5 4.5 7.0 0.8 492 chr2L 22343793 intron CG17018 + chr2L 22344039 intron CG17018 + chr2L 22344285 intron CG17018 + chr2L_6_22340001 chr2L_22340001 RAL-377 852 chr2L 22581955 22581992 chr2L 22583760 22583801 S-element 23 1808 6.5 4.0 5.2 3.7 1846 chr2L 22581955 intron CG17494 + chr2L 22582878 intron CG17494 + chr2L 22583801 intron CG17494 + chr2L_23_22580001 chr2L_22580001 RAL-377 853 chr2L 22776402 22776450 chr2L 22778211 22778259 S-element 21 1809 4.5 7.5 6.0 3.0 1857 chr2L 22776402 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778259 intergenic not near genes chr2L_21_22775001 chr2L_22775001 RAL-377 854 chr2L 23169704 23169749 chr2L 23169943 23169973 9 236 6.5 13.0 9.8 0.8 269 chr2L 23169704 intron CG12567 - chr2L 23169838 intron CG12567 - chr2L 23169973 intron CG12567 - chr2L_9_23165001 chr2L_23165001 RAL-377 855 chr2R 469952 469971 chr2R 473212 473227 F-element 4 3260 4.0 4.0 4.0 0.8 3275 chr2R 469952 intergenic not near genes chr2R 471590 intergenic not near genes chr2R 473227 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-377 856 chr2R 529325 529340 chr2R 537955 537985 Max-element 8 8642 4.0 5.0 4.5 1.5 8660 chr2R 529325 intron CG40378 + chr2R 533655 intron CG40378 + chr2R 537985 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-377 857 chr2R 1090270 1090273 chr2R 1090384 1090387 4 114 13.5 10.5 12.0 0.3 117 chr2R 1090270 intron rl + chr2R 1090328 intron rl + chr2R 1090387 intron rl + chr2R_4_1090001 chr2R_1090001 RAL-377 858 chr2R 1317833 1317866 chr2R 1318162 1318167 5 318 35.0 27.5 31.2 0.2 334 chr2R 1317833 intergenic not near genes chr2R 1318000 intergenic not near genes chr2R 1318167 intergenic not near genes chr2R_5_1315001 chr2R_1315001 RAL-377 859 chr2R 1365847 1365888 chr2R 1365975 1366018 6 128 10.5 12.5 11.5 0.5 171 chr2R 1365847 intron l(2)41Ab + chr2R 1365932 intron l(2)41Ab + chr2R 1366018 intron l(2)41Ab + chr2R_6_1365001 chr2R_1365001 RAL-377 860 chr2R 1513930 1513972 chr2R 1514103 1514144 7 172 36.0 48.0 42.0 0.2 214 chr2R 1513930 3` UTR Maf1 - chr2R 1514037 3` UTR Maf1 - chr2R 1514144 3` UTR Maf1 - chr2R_7_1510001 chr2R_1510001 RAL-377 861 chr2R 1516585 1516602 chr2R 1521333 1521350 1731 19 4748 32.5 11.5 22.0 0.8 4765 chr2R 1516585 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521350 5` UTR Maf1 - chr2R_19_1515001 chr2R_1515001 RAL-377 862 chr2R 1755926 1755973 chr2R 1756060 1756107 13 134 11.0 8.5 9.8 1.2 181 chr2R 1755926 intron CG41520 + chr2R 1756016 intron CG41520 + chr2R 1756107 intron CG41520 + chr2R_13_1755001 chr2R_1755001 RAL-377 863 chr2R 1779047 1779068 chr2R 1779221 1779242 7 174 10.0 6.5 8.2 0.8 195 chr2R 1779047 intergenic CG41520 + chr2R 1779144 intergenic CG41520 + chr2R 1779242 intergenic CG41520 + chr2R_7_1775001 chr2R_1775001 RAL-377 864 chr2R 2015120 2015164 chr2R 2015214 2015261 10 97 8.0 8.5 8.2 1.1 141 chr2R 2015120 intron CG17684 - chr2R 2015190 intron CG17684 - chr2R 2015261 intron CG17684 - chr2R_10_2015001 chr2R_2015001 RAL-377 865 chr2R 2110486 2110499 chr2R 2118064 2118077 17.6 5 7578 3.5 4.0 3.8 1.0 7591 chr2R 2110486 intron CG17684 - chr2R 2114282 intron CG17684 - chr2R 2118077 intron CG17684 - chr2R_5_2110001 chr2R_2110001 RAL-377 866 chr2R 2498964 2499014 chr2R 2508131 2508181 roo 17 9165 6.0 4.0 5.0 2.8 9217 chr2R 2498964 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508181 intron MFS17 - chr2R_17_2500001 chr2R_2500001 RAL-377 867 chr2R 2508299 2508333 chr2R 2508457 2508490 5 157 4.5 4.5 4.5 0.9 191 chr2R 2508299 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508490 intron MFS17 - chr2R_5_2505001 chr2R_2505001 RAL-377 868 chr2R 2875364 2875393 chr2R 2878897 2878929 HMS-Beagle 4 3535 12.0 15.0 13.5 0.3 3565 chr2R 2875364 intergenic not near genes chr2R 2877146 intergenic not near genes chr2R 2878929 intergenic not near genes chr2R_4_2875001 chr2R_2875001 RAL-377 869 chr2R 3144096 3144109 chr2R 3393394 3393407 Doc 6 249297 22.0 25.0 23.5 0.2 249311 chr2R 3144096 intron CG42596 + chr2R 3268752 intergenic not near genes chr2R 3393407 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-377 870 chr2R 3293722 3293751 chr2R 3293820 3293849 6 96 9.0 7.0 8.0 0.7 127 chr2R 3293722 intergenic not near genes chr2R 3293786 intergenic not near genes chr2R 3293849 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-377 871 chr2R 3515272 3515302 chr2R 3515380 3515410 7 108 30.0 29.5 29.8 0.2 138 chr2R 3515272 intergenic not near genes chr2R 3515341 intergenic not near genes chr2R 3515410 intergenic not near genes chr2R_7_3515001 chr2R_3515001 RAL-377 872 chr2R 3526630 3526633 chr2R 3531380 3531382 F-element 4 4750 5.0 5.5 5.2 0.6 4752 chr2R 3526630 intergenic not near genes chr2R 3529006 intergenic not near genes chr2R 3531382 intergenic not near genes chr2R_4_3525001 chr2R_3525001 RAL-377 873 chr2R 3532598 3532634 chr2R 3536061 3536097 Doc 7 3463 3.5 4.0 3.8 1.5 3499 chr2R 3532598 intergenic not near genes chr2R 3534348 intergenic not near genes chr2R 3536097 intergenic not near genes chr2R_7_3530001 chr2R_3530001 RAL-377 874 chr2R 3927682 3927687 chr2R 4854358 4854364 gypsy10 4 926677 20.5 13.0 16.8 0.2 926682 chr2R 3927682 intron uex - chr2R 4391023 intron Gprk1 - chr2R 4854364 intergenic not near genes chr2R_4_4390001 chr2R_4390001 RAL-377 875 chr2R 4015313 4015334 chr2R 4015506 4015527 8 192 16.0 20.5 18.2 0.4 214 chr2R 4015313 intron Haspin + chr2R 4015420 intron Haspin + chr2R 4015527 intron Haspin + chr2R_8_4015001 chr2R_4015001 RAL-377 876 chr2R 4015342 4015641 chr2R 4015499 4015751 5 151 21.5 19.0 20.2 0.2 409 chr2R 4015342 intron Haspin + chr2R 4015546 intron Haspin + chr2R 4015751 intron Haspin + chr2R_5_4015001 chr2R_4015001 RAL-377 877 chr2R 4312936 4312985 chr2R 4313040 4313089 14 104 14.0 16.0 15.0 0.9 153 chr2R 4312936 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313089 intergenic not near genes chr2R_14_4310001 chr2R_4310001 RAL-377 878 chr2R 4604546 4604578 chr2R 4604634 4604672 13 95 2.5 4.0 3.2 3.1 126 chr2R 4604546 intron p120ctn + chr2R 4604609 intron p120ctn + chr2R 4604672 intron p120ctn + chr2R_13_4600001 chr2R_4600001 RAL-377 879 chr2R 4617903 4617948 chr2R 4618195 4618240 5 292 3.5 3.5 3.5 1.1 337 chr2R 4617903 intergenic not near genes chr2R 4618072 intergenic not near genes chr2R 4618240 intergenic not near genes chr2R_5_4615001 chr2R_4615001 RAL-377 880 chr2R 4622958 4622986 chr2R 4624125 4624164 1360 7 1176 4.0 9.0 6.5 0.9 1206 chr2R 4622958 intergenic CR44101 - chr2R 4623561 intergenic not near genes chr2R 4624164 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-377 881 chr2R 4624625 4624671 chr2R 4626550 4626596 Bica 16 1924 6.5 6.0 6.2 2.2 1971 chr2R 4624625 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626596 intergenic not near genes chr2R_16_4625001 chr2R_4625001 RAL-377 882 chr2R 4634158 4634177 chr2R 4634244 4634276 6 93 7.5 7.5 7.5 0.7 118 chr2R 4634158 intergenic not near genes chr2R 4634217 intergenic not near genes chr2R 4634276 intergenic not near genes chr2R_6_4630001 chr2R_4630001 RAL-377 883 chr2R 4702484 4702492 chr2R 4702642 4702650 4 158 7.0 7.5 7.2 0.5 166 chr2R 4702484 intron Nipped-B - chr2R 4702567 intron Nipped-B - chr2R 4702650 intron Nipped-B - chr2R_4_4700001 chr2R_4700001 RAL-377 884 chr2R 4702495 4702498 chr2R 4702640 4702647 5 152 7.0 7.0 7.0 0.6 152 chr2R 4702495 intron Nipped-B - chr2R 4702571 intron Nipped-B - chr2R 4702647 intron Nipped-B - chr2R_5_4700001 chr2R_4700001 RAL-377 885 chr2R 4704801 4704851 chr2R 4705137 4705182 5 334 13.5 11.5 12.5 0.4 381 chr2R 4704801 intron Nipped-B - chr2R 4704992 intron Nipped-B - chr2R 4705182 intron Nipped-B - chr2R_5_4700001 chr2R_4700001 RAL-377 886 chr2R 4746207 4746248 chr2R 4746853 4746894 7 645 16.5 15.5 16.0 0.4 687 chr2R 4746207 intron conu + chr2R 4746550 intron conu + chr2R 4746894 intron conu + chr2R_7_4745001 chr2R_4745001 RAL-377 887 chr2R 4750331 4750373 chr2R 4751498 4751550 1360 8 1174 7.0 9.5 8.2 0.9 1219 chr2R 4750331 intron conu + chr2R 4750940 intron conu + chr2R 4751550 intron conu + chr2R_8_4750001 chr2R_4750001 RAL-377 888 chr2R 4821202 4821242 chr2R 4821308 4821348 11 104 14.0 15.5 14.8 0.7 146 chr2R 4821202 intron CG17528 - chr2R 4821275 intron CG17528 - chr2R 4821348 intron CG17528 - chr2R_11_4820001 chr2R_4820001 RAL-377 889 chr2R 4838851 4838902 chr2R 4840394 4840445 transib2 14 1543 6.0 3.5 4.8 2.4 1594 chr2R 4838851 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840445 intergenic not near genes chr2R_14_4835001 chr2R_4835001 RAL-377 890 chr2R 4870725 4870727 chr2R 4871256 4871258 R1A1-element 4 531 7.5 4.0 5.8 0.6 533 chr2R 4870725 intergenic not near genes chr2R 4870992 intergenic not near genes chr2R 4871258 intergenic not near genes chr2R_4_4870001 chr2R_4870001 RAL-377 891 chr2R 4870731 4870742 chr2R 4871255 4871273 R1A1-element 6 530 4.5 4.0 4.2 1.2 542 chr2R 4870731 intergenic not near genes chr2R 4871002 intergenic not near genes chr2R 4871273 intergenic not near genes chr2R_6_4870001 chr2R_4870001 RAL-377 892 chr2R 4887608 4887637 chr2R 4887824 4887853 4 214 12.0 19.0 15.5 0.2 245 chr2R 4887608 intergenic not near genes chr2R 4887730 intergenic not near genes chr2R 4887853 intergenic not near genes chr2R_4_4885001 chr2R_4885001 RAL-377 893 chr2R 4888595 4888616 chr2R 4888695 4888704 4 100 7.0 9.0 8.0 0.4 109 chr2R 4888595 intergenic not near genes chr2R 4888650 intergenic not near genes chr2R 4888704 intergenic not near genes chr2R_4_4885001 chr2R_4885001 RAL-377 894 chr2R 5008973 5009025 chr2R 5009302 5009353 4 329 11.5 7.5 9.5 0.4 380 chr2R 5008973 intron Ir41a + chr2R 5009163 intron Ir41a + chr2R 5009353 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-377 895 chr2R 5075956 5075981 chr2R 5076098 5076123 8 143 28.0 26.5 27.2 0.3 167 chr2R 5075956 intergenic not near genes chr2R 5076040 intergenic not near genes chr2R 5076123 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-377 896 chr2R 5103036 5103065 chr2R 5103128 5103167 7 98 9.0 7.0 8.0 0.8 131 chr2R 5103036 intergenic not near genes chr2R 5103102 intergenic not near genes chr2R 5103167 intergenic not near genes chr2R_7_5100001 chr2R_5100001 RAL-377 897 chr2R 5109979 5109998 chr2R 5110623 5110642 4 644 14.5 13.5 14.0 0.3 663 chr2R 5109979 intergenic not near genes chr2R 5110310 intergenic not near genes chr2R 5110642 intergenic not near genes chr2R_4_5110001 chr2R_5110001 RAL-377 898 chr2R 5125226 5125271 chr2R 5125564 5125609 13 334 4.5 5.5 5.0 2.2 383 chr2R 5125226 intron gus - chr2R 5125418 intron gus - chr2R 5125609 intron gus - chr2R_13_5125001 chr2R_5125001 RAL-377 899 chr2R 5192699 5192730 chr2R 5192796 5192827 8 97 2.5 4.5 3.5 1.8 128 chr2R 5192699 intron Nipped-A - chr2R 5192763 intron Nipped-A - chr2R 5192827 intron Nipped-A - chr2R_8_5190001 chr2R_5190001 RAL-377 900 chr2R 5237331 5237368 chr2R 5237433 5237470 16 101 4.0 0.0 2.0 5.3 139 chr2R 5237331 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237470 intron Nipped-A - chr2R_16_5235001 chr2R_5235001 RAL-377 901 chr2R 5240218 5240233 chr2R 5240303 5240329 4 93 15.0 17.5 16.2 0.2 111 chr2R 5240218 intron Nipped-A - chr2R 5240274 intron Nipped-A - chr2R 5240329 intron Nipped-A - chr2R_4_5240001 chr2R_5240001 RAL-377 902 chr2R 5303469 5303522 chr2R 5303577 5303630 19 108 3.5 6.0 4.8 3.3 161 chr2R 5303469 intergenic not near genes chr2R 5303550 intergenic not near genes chr2R 5303630 intergenic not near genes chr2R_19_5300001 chr2R_5300001 RAL-377 903 chr2R 5342807 5342858 chr2R 5342924 5342975 6 117 12.0 15.0 13.5 0.4 168 chr2R 5342807 intergenic not near genes chr2R 5342891 intergenic not near genes chr2R 5342975 intergenic not near genes chr2R_6_5340001 chr2R_5340001 RAL-377 904 chr2R 5363469 5363503 chr2R 5363567 5363601 9 98 18.5 12.5 15.5 0.5 132 chr2R 5363469 5` UTR CR42646 + chr2R 5363535 intron CR42646 + chr2R 5363601 intron CR42646 + chr2R_9_5360001 chr2R_5360001 RAL-377 905 chr2R 5396239 5396269 chr2R 5396497 5396527 8 258 17.5 14.5 16.0 0.5 288 chr2R 5396239 intergenic not near genes chr2R 5396383 intergenic not near genes chr2R 5396527 intergenic not near genes chr2R_8_5395001 chr2R_5395001 RAL-377 906 chr2R 5417975 5418015 chr2R 5420627 5420667 Burdock 21 2652 7.0 8.0 7.5 2.5 2692 chr2R 5417975 intron laccase2 + chr2R 5419321 intron laccase2 + chr2R 5420667 intron laccase2 + chr2R_21_5415001 chr2R_5415001 RAL-377 907 chr2R 5472357 5472384 chr2R 5472461 5472498 7 102 1.5 3.0 2.2 2.2 141 chr2R 5472357 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472498 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-377 908 chr2R 5473357 5473400 chr2R 5473463 5473488 7 106 9.0 10.0 9.5 0.7 131 chr2R 5473357 intron CG30440 - chr2R 5473422 intron CG30440 - chr2R 5473488 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-377 909 chr2R 5543199 5543223 chr2R 5547303 5547327 invader1 7 4104 0.0 7.0 3.5 1.6 4128 chr2R 5543199 intron CG30438 + chr2R 5545263 intron CG30438 + chr2R 5547327 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-377 910 chr2R 5581397 5581417 chr2R 5627605 5627646 4 46224 2.5 5.5 4.0 0.8 46249 chr2R 5581397 intergenic not near genes chr2R 5604522 intron Fis1 - chr2R 5627646 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-377 911 chr2R 5621010 5621037 chr2R 5621160 5621195 5 152 7.0 8.0 7.5 0.6 185 chr2R 5621010 intergenic not near genes chr2R 5621102 intergenic not near genes chr2R 5621195 intergenic not near genes chr2R_5_5620001 chr2R_5620001 RAL-377 912 chr2R 5640017 5640030 chr2R 5640114 5640127 6 96 14.0 13.0 13.5 0.4 110 chr2R 5640017 intergenic not near genes chr2R 5640072 intergenic not near genes chr2R 5640127 intergenic not near genes chr2R_6_5640001 chr2R_5640001 RAL-377 913 chr2R 5640457 5640490 chr2R 5640562 5640602 6 111 13.5 17.0 15.2 0.4 145 chr2R 5640457 intergenic CG11665 - chr2R 5640530 intergenic CG11665 - chr2R 5640602 intergenic CG11665 - chr2R_6_5640001 chr2R_5640001 RAL-377 914 chr2R 5647805 5647817 chr2R 5648121 5648133 INE-1 5 316 15.5 14.5 15.0 0.3 328 chr2R 5647805 exon CG11665 - chr2R 5647969 intron CG11665 - chr2R 5648133 intron CG11665 - chr2R_5_5645001 chr2R_5645001 RAL-377 915 chr2R 5655404 5655442 chr2R 5655496 5655542 12 96 16.0 15.5 15.8 0.7 138 chr2R 5655404 exon CG1344 + chr2R 5655473 exon CG1344 + chr2R 5655542 exon CG1344 + chr2R_12_5655001 chr2R_5655001 RAL-377 916 chr2R 5655856 5655903 chr2R 5655964 5656005 10 107 4.5 5.0 4.8 1.7 149 chr2R 5655856 3` UTR CG1344 + chr2R 5655930 3` UTR CG1344 + chr2R 5656005 3` UTR CG1344 + chr2R_10_5655001 chr2R_5655001 RAL-377 917 chr2R 5701734 5701784 chr2R 5701834 5701864 12 97 14.0 15.0 14.5 0.8 130 chr2R 5701734 intergenic vlc + chr2R 5701799 intergenic vlc + chr2R 5701864 intergenic vlc + chr2R_12_5700001 chr2R_5700001 RAL-377 918 chr2R 5750430 5750454 chr2R 5750542 5750560 11 109 8.0 6.5 7.2 1.3 130 chr2R 5750430 intergenic not near genes chr2R 5750495 intergenic not near genes chr2R 5750560 intergenic not near genes chr2R_11_5750001 chr2R_5750001 RAL-377 919 chr2R 5772507 5772635 chr2R 5772605 5772793 12 120 9.0 3.0 6.0 1.7 286 chr2R 5772507 3` UTR Gp210 + chr2R 5772650 3` UTR Gp210 + chr2R 5772793 3` UTR Gp210 + chr2R_12_5770001 chr2R_5770001 RAL-377 920 chr2R 5772826 5772858 chr2R 5772928 5772960 4 102 9.5 10.0 9.8 0.4 134 chr2R 5772826 3` UTR Gp210 + chr2R 5772893 3` UTR Gp210 + chr2R 5772960 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-377 921 chr2R 5790456 5790492 chr2R 5790561 5790597 9 105 16.0 14.5 15.2 0.6 141 chr2R 5790456 intergenic not near genes chr2R 5790526 intergenic not near genes chr2R 5790597 intergenic not near genes chr2R_9_5790001 chr2R_5790001 RAL-377 922 chr2R 5807838 5807868 chr2R 5808045 5808075 4 202 11.5 8.0 9.8 0.4 237 chr2R 5807838 intron dpr12 + chr2R 5807956 intron dpr12 + chr2R 5808075 intron dpr12 + chr2R_4_5805001 chr2R_5805001 RAL-377 923 chr2R 5861297 5861312 chr2R 5861410 5861453 4 130 3.5 4.5 4.0 0.8 156 chr2R 5861297 intergenic dpr12 + chr2R 5861375 intergenic not near genes chr2R 5861453 intergenic not near genes chr2R_4_5860001 chr2R_5860001 RAL-377 924 chr2R 5869255 5869302 chr2R 5874351 5874398 flea 20 5095 5.0 5.0 5.0 3.3 5143 chr2R 5869255 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874398 intergenic not near genes chr2R_20_5870001 chr2R_5870001 RAL-377 925 chr2R 5876853 5876898 chr2R 5876975 5876989 6 116 8.5 7.5 8.0 0.7 136 chr2R 5876853 intergenic not near genes chr2R 5876921 intergenic not near genes chr2R 5876989 intergenic not near genes chr2R_6_5875001 chr2R_5875001 RAL-377 926 chr2R 5878906 5878953 chr2R 5879006 5879053 12 100 3.5 6.5 5.0 2.0 147 chr2R 5878906 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879053 intergenic CG44438 - chr2R_12_5875001 chr2R_5875001 RAL-377 927 chr2R 5885345 5885375 chr2R 5885494 5885524 15 148 3.0 4.0 3.5 3.3 179 chr2R 5885345 5` UTR CR44125 + chr2R 5885434 5` UTR CR44125 + chr2R 5885524 5` UTR CR44125 + chr2R_15_5885001 chr2R_5885001 RAL-377 928 chr2R 5902140 5902192 chr2R 5909719 5909771 17.6 7 7579 5.0 5.0 5.0 1.2 7631 chr2R 5902140 intron CG43366 + chr2R 5905956 intron CG43366 + chr2R 5909771 intron CG43366 + chr2R_7_5905001 chr2R_5905001 RAL-377 929 chr2R 5910065 5910116 chr2R 5910421 5910472 11 356 18.0 16.0 17.0 0.6 407 chr2R 5910065 intron CG43366 + chr2R 5910268 intron CG43366 + chr2R 5910472 intron CG43366 + chr2R_11_5910001 chr2R_5910001 RAL-377 930 chr2R 5934877 5934903 chr2R 5934994 5935020 5 117 20.5 18.5 19.5 0.2 143 chr2R 5934877 intergenic not near genes chr2R 5934948 intergenic not near genes chr2R 5935020 intergenic not near genes chr2R_5_5930001 chr2R_5930001 RAL-377 931 chr2R 5945791 5945832 chr2R 5945899 5945945 6 112 12.0 17.5 14.8 0.4 154 chr2R 5945791 intergenic not near genes chr2R 5945868 intergenic not near genes chr2R 5945945 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-377 932 chr2R 5957033 5957049 chr2R 5957135 5957151 4 102 17.5 18.5 18.0 0.2 118 chr2R 5957033 intergenic not near genes chr2R 5957092 intergenic not near genes chr2R 5957151 intergenic CG7882 + chr2R_4_5955001 chr2R_5955001 RAL-377 933 chr2R 5985820 5985868 chr2R 5985923 5985971 12 102 12.5 7.5 10.0 1.1 151 chr2R 5985820 intron Src42A + chr2R 5985896 intron Src42A + chr2R 5985971 intron Src42A + chr2R_12_5985001 chr2R_5985001 RAL-377 934 chr2R 6053272 6053278 chr2R 6053535 6053543 4 273 15.0 12.5 13.8 0.3 271 chr2R 6053272 intron CCHa2-R + chr2R 6053408 intron CCHa2-R + chr2R 6053543 intron CCHa2-R + chr2R_4_6050001 chr2R_6050001 RAL-377 935 chr2R 6088350 6088389 chr2R 6088463 6088502 12 113 21.5 16.0 18.8 0.6 152 chr2R 6088350 intergenic not near genes chr2R 6088426 intergenic not near genes chr2R 6088502 intergenic not near genes chr2R_12_6085001 chr2R_6085001 RAL-377 936 chr2R 6096720 6096747 chr2R 6101923 6101952 BS 4 5210 4.5 4.0 4.2 0.8 5232 chr2R 6096720 intron EcR - chr2R 6099336 intron EcR - chr2R 6101952 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-377 937 chr2R 6129306 6129357 chr2R 6129404 6129447 10 97 9.0 8.0 8.5 1.1 141 chr2R 6129306 intron EcR - chr2R 6129376 intron EcR - chr2R 6129447 intron EcR - chr2R_10_6125001 chr2R_6125001 RAL-377 938 chr2R 6168178 6168223 chr2R 6168280 6168325 15 100 18.5 14.5 16.5 0.9 147 chr2R 6168178 intron EcR - chr2R 6168252 intron EcR - chr2R 6168325 intron EcR - chr2R_15_6165001 chr2R_6165001 RAL-377 939 chr2R 6178101 6178131 chr2R 6178247 6178277 10 146 10.0 8.5 9.2 1.0 176 chr2R 6178101 intergenic not near genes chr2R 6178189 intergenic not near genes chr2R 6178277 intergenic not near genes chr2R_10_6175001 chr2R_6175001 RAL-377 940 chr2R 6194680 6194687 chr2R 6194783 6194790 4 103 7.5 2.0 4.8 0.7 110 chr2R 6194680 intron Ptr - chr2R 6194735 intron Ptr - chr2R 6194790 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-377 941 chr2R 6217918 6217954 chr2R 6218144 6218180 8 226 13.0 17.5 15.2 0.5 262 chr2R 6217918 intron,intron bin3 +,CR44161 - chr2R 6218049 intron,intron bin3 +,CR44161 - chr2R 6218180 intron,intron bin3 +,CR44161 - chr2R_8_6215001 chr2R_6215001 RAL-377 942 chr2R 6236719 6236736 chr2R 6236846 6236863 4 127 11.5 10.0 10.8 0.3 144 chr2R 6236719 intron bin3 + chr2R 6236791 intron bin3 + chr2R 6236863 intron bin3 + chr2R_4_6235001 chr2R_6235001 RAL-377 943 chr2R 6492541 6492555 chr2R 6492637 6492651 7 96 10.0 18.5 14.2 0.5 110 chr2R 6492541 intergenic not near genes chr2R 6492596 intergenic not near genes chr2R 6492651 intergenic not near genes chr2R_7_6490001 chr2R_6490001 RAL-377 944 chr2R 6494511 6494553 chr2R 6499293 6499335 F-element 14 4778 4.0 3.0 3.5 3.1 4824 chr2R 6494511 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499335 intergenic not near genes chr2R_14_6495001 chr2R_6495001 RAL-377 945 chr2R 6539828 6539856 chr2R 6539962 6539999 12 139 1.0 3.0 2.0 4.0 171 chr2R 6539828 intron jing + chr2R 6539914 intron jing + chr2R 6539999 intron jing + chr2R_12_6535001 chr2R_6535001 RAL-377 946 chr2R 6579758 6579806 chr2R 6584864 6584912 flea 22 5106 2.5 6.5 4.5 4.0 5154 chr2R 6579758 intron jing + chr2R 6582335 intron jing + chr2R 6584912 intron jing + chr2R_22_6580001 chr2R_6580001 RAL-377 947 chr2R 6607909 6607950 chr2R 6608030 6608072 7 121 17.0 16.0 16.5 0.4 163 chr2R 6607909 intron jing + chr2R 6607990 intron jing + chr2R 6608072 intron jing + chr2R_7_6605001 chr2R_6605001 RAL-377 948 chr2R 6633177 6633228 chr2R 6633274 6633325 9 96 9.5 12.0 10.8 0.8 148 chr2R 6633177 intergenic Vha16-1 -,Trap1 - chr2R 6633251 intergenic Vha16-1 -,Trap1 - chr2R 6633325 intergenic Vha16-1 -,Trap1 - chr2R_9_6630001 chr2R_6630001 RAL-377 949 chr2R 6699575 6699623 chr2R 6699680 6699728 21 104 5.0 4.5 4.8 3.6 153 chr2R 6699575 intergenic Rab2 + chr2R 6699652 intergenic Rab2 + chr2R 6699728 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_21_6695001 chr2R_6695001 RAL-377 950 chr2R 6706951 6706995 chr2R 6707232 6707272 4 280 14.0 15.0 14.5 0.3 321 chr2R 6706951 intron,intron CG3409 -,CG45092 - chr2R 6707112 intron,intron CG3409 -,CG45092 - chr2R 6707272 intron,intron,3` UTR CG3409 -,CG45092 -,mir-4975 - chr2R_4_6705001 chr2R_6705001 RAL-377 951 chr2R 6738853 6738865 chr2R 6738954 6738967 5 102 6.0 11.0 8.5 0.5 114 chr2R 6738853 intron l(2)01289 - chr2R 6738910 intron l(2)01289 - chr2R 6738967 intron l(2)01289 - chr2R_5_6735001 chr2R_6735001 RAL-377 952 chr2R 6806803 6806817 chr2R 6806882 6806905 6 97 6.0 5.5 5.8 0.9 102 chr2R 6806803 intergenic not near genes chr2R 6806854 intergenic not near genes chr2R 6806905 intergenic not near genes chr2R_6_6805001 chr2R_6805001 RAL-377 953 chr2R 6897466 6897484 chr2R 6897563 6897587 4 98 12.0 9.5 10.8 0.3 121 chr2R 6897466 intron CG30158 + chr2R 6897526 intron CG30158 + chr2R 6897587 intron CG30158 + chr2R_4_6895001 chr2R_6895001 RAL-377 954 chr2R 6952159 6952184 chr2R 6959759 6959784 opus 8 7600 4.0 7.0 5.5 1.2 7625 chr2R 6952159 intron,intron mim -,CheB42c - chr2R 6955972 intron,intron mim -,CheB42c - chr2R 6959784 intron,intron mim -,CheB42c - chr2R_8_6955001 chr2R_6955001 RAL-377 955 chr2R 6964264 6964315 chr2R 6964361 6964412 11 97 8.5 4.0 6.2 1.5 148 chr2R 6964264 intron,intron mim -,CheB42c - chr2R 6964338 intron,intron mim -,CheB42c - chr2R 6964412 intron,intron mim -,CheB42c - chr2R_11_6960001 chr2R_6960001 RAL-377 956 chr2R 6978621 6978667 chr2R 6978824 6978870 7 201 12.5 14.5 13.5 0.5 249 chr2R 6978621 intron vimar - chr2R 6978746 intron vimar - chr2R 6978870 intron vimar - chr2R_7_6975001 chr2R_6975001 RAL-377 957 chr2R 7025888 7025925 chr2R 7025989 7026033 11 105 11.0 12.0 11.5 0.9 145 chr2R 7025888 intron Tsp42Ef + chr2R 7025960 intron Tsp42Ef + chr2R 7026033 intron Tsp42Ef + chr2R_11_7025001 chr2R_7025001 RAL-377 958 chr2R 7067579 7067616 chr2R 7067683 7067720 6 104 17.0 14.5 15.8 0.4 141 chr2R 7067579 intergenic not near genes chr2R 7067650 intergenic not near genes chr2R 7067720 intergenic not near genes chr2R_6_7065001 chr2R_7065001 RAL-377 959 chr2R 7153159 7153188 chr2R 7153251 7153293 8 100 10.5 13.5 12.0 0.6 134 chr2R 7153159 intron,intron pk +,Spn43Ab - chr2R 7153226 intron,intron pk +,Spn43Ab - chr2R 7153293 intron,intron pk +,Spn43Ab - chr2R_8_7150001 chr2R_7150001 RAL-377 960 chr2R 7164093 7164124 chr2R 7164247 7164278 7 154 16.0 15.0 15.5 0.4 185 chr2R 7164093 intron pk + chr2R 7164186 intron pk + chr2R 7164278 intron pk + chr2R_7_7160001 chr2R_7160001 RAL-377 961 chr2R 7175482 7175529 chr2R 7175581 7175628 5 99 13.0 11.0 12.0 0.4 146 chr2R 7175482 intron pk + chr2R 7175555 intron pk + chr2R 7175628 intron pk + chr2R_5_7175001 chr2R_7175001 RAL-377 962 chr2R 7196554 7196597 chr2R 7201344 7201392 F-element 15 4794 5.0 3.5 4.2 2.9 4838 chr2R 7196554 intron pk + chr2R 7198973 intron pk + chr2R 7201392 intron pk + chr2R_15_7195001 chr2R_7195001 RAL-377 963 chr2R 7235798 7235846 chr2R 7240910 7240958 jockey 12 5110 4.0 1.0 2.5 3.4 5160 chr2R 7235798 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240958 intergenic not near genes chr2R_12_7235001 chr2R_7235001 RAL-377 964 chr2R 7262181 7262217 chr2R 7269261 7269265 297 7 7075 2.0 8.5 5.2 1.1 7084 chr2R 7262181 intergenic not near genes chr2R 7265723 intergenic not near genes chr2R 7269265 intergenic not near genes chr2R_7_7265001 chr2R_7265001 RAL-377 965 chr2R 7290196 7290215 chr2R 7290318 7290337 6 122 9.5 9.5 9.5 0.6 141 chr2R 7290196 intron pwn + chr2R 7290266 intron pwn + chr2R 7290337 intron pwn + chr2R_6_7290001 chr2R_7290001 RAL-377 966 chr2R 7310765 7310790 chr2R 7310867 7310891 4 97 7.5 9.0 8.2 0.4 126 chr2R 7310765 intergenic not near genes chr2R 7310828 intergenic not near genes chr2R 7310891 intergenic not near genes chr2R_4_7310001 chr2R_7310001 RAL-377 967 chr2R 7417917 7418156 chr2R 7418023 7418252 6 98 13.5 20.0 16.8 0.3 335 chr2R 7417917 intergenic not near genes chr2R 7418084 intergenic not near genes chr2R 7418252 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-377 968 chr2R 7434879 7434909 chr2R 7439200 7439230 Juan 14 4321 7.0 9.0 8.0 1.6 4351 chr2R 7434879 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439230 intergenic not near genes chr2R_14_7435001 chr2R_7435001 RAL-377 969 chr2R 7459259 7459278 chr2R 7459367 7459386 4 108 15.5 15.5 15.5 0.2 127 chr2R 7459259 intergenic Inos -,CG11141 - chr2R 7459322 intergenic CG11141 -,Inos - chr2R 7459386 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-377 970 chr2R 7493990 7494028 chr2R 7494090 7494128 6 100 19.5 18.5 19.0 0.3 138 chr2R 7493990 3` UTR CG1620 - chr2R 7494059 3` UTR CG1620 - chr2R 7494128 3` UTR CG1620 - chr2R_6_7490001 chr2R_7490001 RAL-377 971 chr2R 7551663 7551714 chr2R 7551774 7551818 12 109 21.5 23.0 22.2 0.5 155 chr2R 7551663 intron Corin + chr2R 7551740 intron Corin + chr2R 7551818 intron Corin + chr2R_12_7550001 chr2R_7550001 RAL-377 972 chr2R 7608388 7608408 chr2R 7613605 7613615 I-element 5 5219 6.5 0.0 3.2 1.2 5227 chr2R 7608388 intron CG1358 - chr2R 7611002 intron CG1358 - chr2R 7613615 intron CG1358 - chr2R_5_7610001 chr2R_7610001 RAL-377 973 chr2R 7686188 7686199 chr2R 7686311 7686322 4 123 16.0 16.5 16.2 0.2 134 chr2R 7686188 intron CG1399 - chr2R 7686255 intron CG1399 - chr2R 7686322 intron CG1399 - chr2R_4_7685001 chr2R_7685001 RAL-377 974 chr2R 7691998 7692035 chr2R 7692094 7692135 8 100 15.5 16.0 15.8 0.5 137 chr2R 7691998 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692135 intron CG1399 - chr2R_8_7690001 chr2R_7690001 RAL-377 975 chr2R 7760277 7760305 chr2R 7760434 7760460 5 157 11.0 13.5 12.2 0.4 183 chr2R 7760277 intron,intron CG30497 -,CG45093 - chr2R 7760368 intron,intron CG30497 -,CG45093 - chr2R 7760460 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-377 976 chr2R 7815663 7815675 chr2R 7822152 7822162 Burdock 4 6488 8.5 5.5 7.0 0.5 6499 chr2R 7815663 intergenic CG1882 + chr2R 7818912 intergenic not near genes chr2R 7822162 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-377 977 chr2R 7815676 7815700 chr2R 7822142 7822189 Burdock 9 6486 5.0 4.5 4.8 1.6 6513 chr2R 7815676 intergenic CG1882 + chr2R 7818932 intergenic not near genes chr2R 7822189 3` UTR cathD - chr2R_9_7815001 chr2R_7815001 RAL-377 978 chr2R 7869164 7869208 chr2R 7873970 7874014 Doc 10 4802 4.0 2.0 3.0 2.5 4850 chr2R 7869164 intron Dgk - chr2R 7871589 intron Dgk - chr2R 7874014 intron Dgk - chr2R_10_7870001 chr2R_7870001 RAL-377 979 chr2R 7899511 7899515 chr2R 10066494 10066498 4 2166983 12.5 16.0 14.2 0.3 2166987 chr2R 7899511 intron CG30377 + chr2R 8983004 intron CG8213 - chr2R 10066498 5` UTR CG2292 - chr2R_4_8980001 chr2R_8980001 RAL-377 980 chr2R 7911067 7911086 chr2R 7912360 7912379 11 1293 26.5 25.0 25.8 0.4 1312 chr2R 7911067 intron CG30377 + chr2R 7911723 intron CG30377 + chr2R 7912379 intron CG30377 + chr2R_11_7910001 chr2R_7910001 RAL-377 981 chr2R 7910864 7910911 chr2R 7912443 7912485 9 1576 33.0 30.5 31.8 0.3 1621 chr2R 7910864 intron CG30377 + chr2R 7911674 intron CG30377 + chr2R 7912485 intron CG30377 + chr2R_9_7910001 chr2R_7910001 RAL-377 982 chr2R 7926908 7926931 chr2R 7927004 7927027 5 96 13.0 12.0 12.5 0.4 119 chr2R 7926908 intron CG8791 + chr2R 7926968 intron CG8791 + chr2R 7927027 intron CG8791 + chr2R_5_7925001 chr2R_7925001 RAL-377 983 chr2R 7942162 7942208 chr2R 7942273 7942319 11 109 11.0 11.0 11.0 0.9 157 chr2R 7942162 3` UTR CG14764 - chr2R 7942240 3` UTR CG14764 - chr2R 7942319 3` UTR CG14764 - chr2R_11_7940001 chr2R_7940001 RAL-377 984 chr2R 7944768 7944814 chr2R 7944873 7944919 11 105 14.0 12.0 13.0 0.8 151 chr2R 7944768 intron CG14764 - chr2R 7944844 intron,exon CG14764 -,CG34431 + chr2R 7944919 intron,exon CG14764 -,CG34431 + chr2R_11_7940001 chr2R_7940001 RAL-377 985 chr2R 7952133 7952164 chr2R 7952422 7952453 4 289 6.5 10.0 8.2 0.4 320 chr2R 7952133 intron CG14764 - chr2R 7952293 intron CG14764 - chr2R 7952453 intron CG14764 - chr2R_4_7950001 chr2R_7950001 RAL-377 986 chr2R 7956072 7956104 chr2R 7956168 7956200 5 90 21.5 26.5 24.0 0.2 128 chr2R 7956072 intergenic CG2906 +,CG14764 - chr2R 7956136 intergenic CG2906 +,CG14764 - chr2R 7956200 5` UTR CG2906 + chr2R_5_7955001 chr2R_7955001 RAL-377 987 chr2R 7954098 7954109 chr2R 7959622 7959633 4 5524 27.5 17.0 22.2 0.2 5535 chr2R 7954098 5` UTR CG14764 - chr2R 7956866 intron CG2906 + chr2R 7959633 exon CG2915 - chr2R_4_7955001 chr2R_7955001 RAL-377 988 chr2R 7983287 7983330 chr2R 7983383 7983409 6 89 14.5 17.5 16.0 0.4 122 chr2R 7983287 intron ACC - chr2R 7983348 intron ACC - chr2R 7983409 intron ACC - chr2R_6_7980001 chr2R_7980001 RAL-377 989 chr2R 7999580 7999589 chr2R 7999683 7999692 4 103 10.0 12.5 11.2 0.3 112 chr2R 7999580 intergenic not near genes chr2R 7999636 intergenic not near genes chr2R 7999692 intergenic not near genes chr2R_4_7995001 chr2R_7995001 RAL-377 990 chr2R 8006829 8006879 chr2R 8007008 8007058 10 178 11.0 17.0 14.0 0.7 229 chr2R 8006829 intergenic Odc1 +,Odc2 + chr2R 8006944 intergenic Odc1 +,Odc2 + chr2R 8007058 intergenic Odc2 +,Odc1 + chr2R_10_8005001 chr2R_8005001 RAL-377 991 chr2R 8008868 8008895 chr2R 8008987 8009004 6 116 9.0 15.5 12.2 0.5 136 chr2R 8008868 exon Odc2 + chr2R 8008936 exon Odc2 + chr2R 8009004 3` UTR Odc2 + chr2R_6_8005001 chr2R_8005001 RAL-377 992 chr2R 8015648 8015678 chr2R 8017677 8017688 9 2033 3.5 1.5 2.5 2.6 2040 chr2R 8015648 intergenic mir-4981 + chr2R 8016668 intergenic not near genes chr2R 8017688 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-377 993 chr2R 8026799 8026837 chr2R 8026895 8026933 11 96 4.0 6.0 5.0 1.8 134 chr2R 8026799 intergenic CR45267 + chr2R 8026866 intergenic CR45267 + chr2R 8026933 intergenic CR45267 + chr2R_11_8025001 chr2R_8025001 RAL-377 994 chr2R 8049579 8049595 chr2R 8049731 8049747 8 152 12.5 7.0 9.8 0.7 168 chr2R 8049579 intergenic not near genes chr2R 8049663 intergenic not near genes chr2R 8049747 intergenic not near genes chr2R_8_8045001 chr2R_8045001 RAL-377 995 chr2R 8067048 8067094 chr2R 8067152 8067198 5 103 14.0 14.5 14.2 0.3 150 chr2R 8067048 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067198 exon CG17977 - chr2R_5_8065001 chr2R_8065001 RAL-377 996 chr2R 8076665 8076709 chr2R 8076765 8076809 13 100 12.5 18.5 15.5 0.8 144 chr2R 8076665 intron lig + chr2R 8076737 intron lig + chr2R 8076809 intron lig + chr2R_13_8075001 chr2R_8075001 RAL-377 997 chr2R 8089241 8089284 chr2R 8089347 8089390 13 105 4.5 8.5 6.5 1.7 149 chr2R 8089241 3` UTR sut2 + chr2R 8089316 intergenic sut2 +,sut3 + chr2R 8089390 intergenic sut3 +,sut2 + chr2R_13_8085001 chr2R_8085001 RAL-377 998 chr2R 8105916 8105958 chr2R 8106027 8106069 8 107 7.5 12.0 9.8 0.7 153 chr2R 8105916 5` UTR Cul4 - chr2R 8105992 intron Cul4 - chr2R 8106069 5` UTR Cul4 - chr2R_8_8105001 chr2R_8105001 RAL-377 999 chr2R 8160918 8160948 chr2R 8161028 8161032 1360 6 106 10.0 12.5 11.2 0.5 114 chr2R 8160918 exon CG8708 - chr2R 8160975 intron CG8708 - chr2R 8161032 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-377 1000 chr2R 8191268 8191302 chr2R 8191379 8191410 7 111 15.5 12.0 13.8 0.5 142 chr2R 8191268 intron LRP1 + chr2R 8191339 intron LRP1 + chr2R 8191410 intron LRP1 + chr2R_7_8190001 chr2R_8190001 RAL-377 1001 chr2R 8203741 8203774 chr2R 8203853 8203886 9 112 10.5 9.5 10.0 0.8 145 chr2R 8203741 intron LRP1 + chr2R 8203814 intron LRP1 + chr2R 8203886 intron LRP1 + chr2R_9_8200001 chr2R_8200001 RAL-377 1002 chr2R 8236017 8236058 chr2R 8236118 8236158 15 100 3.5 3.5 3.5 3.3 141 chr2R 8236017 intergenic not near genes chr2R 8236088 intergenic not near genes chr2R 8236158 intergenic not near genes chr2R_15_8235001 chr2R_8235001 RAL-377 1003 chr2R 8277614 8277669 chr2R 8277729 8277769 9 113 4.5 4.5 4.5 1.6 155 chr2R 8277614 5` UTR CR44280 + chr2R 8277692 5` UTR CR44280 + chr2R 8277769 5` UTR CR44280 + chr2R_9_8275001 chr2R_8275001 RAL-377 1004 chr2R 8311499 8311539 chr2R 8311623 8311663 10 123 12.0 9.0 10.5 0.9 164 chr2R 8311499 intergenic CR44450 +,CR44449 - chr2R 8311581 intergenic CR44450 +,CR44449 - chr2R 8311663 5` UTR CR44450 + chr2R_10_8310001 chr2R_8310001 RAL-377 1005 chr2R 8330845 8330890 chr2R 8331349 8331395 roo 17 505 3.0 6.0 4.5 3.1 550 chr2R 8330845 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331395 intron pdm3 + chr2R_17_8330001 chr2R_8330001 RAL-377 1006 chr2R 8398201 8398241 chr2R 8403002 8403036 Doc 7 4800 4.5 4.5 4.5 1.3 4835 chr2R 8398201 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403036 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-377 1007 chr2R 8430137 8430173 chr2R 8430238 8430276 14 100 15.5 6.5 11.0 1.2 139 chr2R 8430137 3` UTR Lcp1 - chr2R 8430206 3` UTR Lcp1 - chr2R 8430276 3` UTR Lcp1 - chr2R_14_8430001 chr2R_8430001 RAL-377 1008 chr2R 8452022 8452063 chr2R 8452125 8452165 7 103 14.5 17.5 16.0 0.4 143 chr2R 8452022 intergenic Mal-A1 - chr2R 8452094 intergenic Mal-A1 - chr2R 8452165 intergenic Mal-A1 - chr2R_7_8450001 chr2R_8450001 RAL-377 1009 chr2R 8489718 8489759 chr2R 8489817 8489858 8 99 11.0 11.5 11.2 0.7 140 chr2R 8489718 intron mtt - chr2R 8489788 intron mtt - chr2R 8489858 intron mtt - chr2R_8_8485001 chr2R_8485001 RAL-377 1010 chr2R 8540574 8540609 chr2R 8540813 8540847 6 239 10.0 14.0 12.0 0.5 273 chr2R 8540574 intergenic not near genes chr2R 8540710 intergenic not near genes chr2R 8540847 intergenic not near genes chr2R_6_8540001 chr2R_8540001 RAL-377 1011 chr2R 8566043 8566066 chr2R 8567006 8567032 1360 11 965 10.5 12.5 11.5 0.9 989 chr2R 8566043 5` UTR Cyp6a14 - chr2R 8566538 5` UTR Cyp6a14 - chr2R 8567032 5` UTR Cyp6a14 - chr2R_11_8565001 chr2R_8565001 RAL-377 1012 chr2R 8568722 8568762 chr2R 8568823 8568862 11 101 13.5 11.0 12.2 0.8 140 chr2R 8568722 intergenic not near genes chr2R 8568792 intergenic not near genes chr2R 8568862 intergenic not near genes chr2R_11_8565001 chr2R_8565001 RAL-377 1013 chr2R 8569845 8569890 chr2R 8569963 8569980 11 117 9.5 10.0 9.8 1.0 135 chr2R 8569845 intergenic not near genes chr2R 8569912 intergenic not near genes chr2R 8569980 intergenic not near genes chr2R_11_8565001 chr2R_8565001 RAL-377 1014 chr2R 8572987 8573032 chr2R 8573091 8573136 13 104 11.0 12.5 11.8 1.0 149 chr2R 8572987 intergenic CG42326 - chr2R 8573062 intergenic CG42326 - chr2R 8573136 intergenic CG42326 - chr2R_13_8570001 chr2R_8570001 RAL-377 1015 chr2R 8612563 8612605 chr2R 8612660 8612701 9 97 10.5 12.5 11.5 0.7 138 chr2R 8612563 intron CG8642 - chr2R 8612632 intron CG8642 - chr2R 8612701 intron CG8642 - chr2R_9_8610001 chr2R_8610001 RAL-377 1016 chr2R 8639707 8639740 chr2R 8644572 8644600 4 4853 9.0 19.0 14.0 0.3 4893 chr2R 8639707 intergenic not near genes chr2R 8642154 intergenic not near genes chr2R 8644600 intergenic not near genes chr2R_4_8640001 chr2R_8640001 RAL-377 1017 chr2R 8658225 8658245 chr2R 8658320 8658334 5 93 2.5 1.5 2.0 1.7 109 chr2R 8658225 intron ptc + chr2R 8658280 intron ptc + chr2R 8658334 intron ptc + chr2R_5_8655001 chr2R_8655001 RAL-377 1018 chr2R 8697457 8697503 chr2R 8697556 8697602 8 99 13.5 13.0 13.2 0.6 145 chr2R 8697457 intron CG8738 + chr2R 8697530 intron CG8738 + chr2R 8697602 intron CG8738 + chr2R_8_8695001 chr2R_8695001 RAL-377 1019 chr2R 8717536 8717586 chr2R 8717787 8717835 14 251 4.5 5.0 4.8 2.4 299 chr2R 8717536 3` UTR PGRP-SC2 + chr2R 8717686 3` UTR PGRP-SC2 + chr2R 8717835 intergenic PGRP-SC2 +,CG14767 - chr2R_14_8715001 chr2R_8715001 RAL-377 1020 chr2R 8722750 8722785 chr2R 8723011 8723043 pogo 10 258 7.0 2.5 4.8 1.7 293 chr2R 8722750 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723043 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-377 1021 chr2R 8766740 8766786 chr2R 8766970 8766995 12 226 9.5 14.5 12.0 0.9 255 chr2R 8766740 intergenic not near genes chr2R 8766868 intergenic not near genes chr2R 8766995 intergenic not near genes chr2R_12_8765001 chr2R_8765001 RAL-377 1022 chr2R 8777902 8777942 chr2R 8784113 8784166 diver 9 6212 6.5 5.0 5.8 1.3 6264 chr2R 8777902 intergenic not near genes chr2R 8781034 intergenic not near genes chr2R 8784166 intergenic not near genes chr2R_9_8780001 chr2R_8780001 RAL-377 1023 chr2R 8960435 8960475 chr2R 8960606 8960646 5 169 9.0 10.5 9.8 0.5 211 chr2R 8960435 exon babo + chr2R 8960540 3` UTR babo + chr2R 8960646 3` UTR babo + chr2R_5_8960001 chr2R_8960001 RAL-377 1024 chr2R 8967667 8967702 chr2R 8967804 8967839 4 137 16.0 12.0 14.0 0.3 172 chr2R 8967667 intron CG8216 - chr2R 8967753 intron CG8216 - chr2R 8967839 intron CG8216 - chr2R_4_8965001 chr2R_8965001 RAL-377 1025 chr2R 8976616 8976639 chr2R 8976709 8976738 5 95 12.5 13.0 12.8 0.4 122 chr2R 8976616 intron CG8213 - chr2R 8976677 intron CG8213 - chr2R 8976738 intron CG8213 - chr2R_5_8975001 chr2R_8975001 RAL-377 1026 chr2R 8995954 8995965 chr2R 8996061 8996072 4 105 7.0 9.0 8.0 0.4 118 chr2R 8995954 intron Np - chr2R 8996013 intron Np - chr2R 8996072 intron Np - chr2R_4_8995001 chr2R_8995001 RAL-377 1027 chr2R 9055770 9055820 chr2R 9055870 9055908 11 95 6.5 4.5 5.5 1.7 138 chr2R 9055770 intron CG13743 - chr2R 9055839 intron CG13743 - chr2R 9055908 intron CG13743 - chr2R_11_9055001 chr2R_9055001 RAL-377 1028 chr2R 9151288 9151333 chr2R 9157777 9157823 Burdock 5 6490 10.0 10.0 10.0 0.5 6535 chr2R 9151288 exon CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157823 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-377 1029 chr2R 9212674 9212710 chr2R 9213180 9213209 roo 11 502 8.0 3.5 5.8 1.6 535 chr2R 9212674 intergenic CR45309 + chr2R 9212942 intergenic CR45309 + chr2R 9213209 5` UTR CR45309 + chr2R_11_9210001 chr2R_9210001 RAL-377 1030 chr2R 9216984 9217028 chr2R 9217072 9217124 6 88 9.5 11.0 10.2 0.5 140 chr2R 9216984 intergenic not near genes chr2R 9217054 intergenic not near genes chr2R 9217124 intergenic not near genes chr2R_6_9215001 chr2R_9215001 RAL-377 1031 chr2R 9324398 9324449 chr2R 9327380 9327425 7 2978 24.0 20.0 22.0 0.3 3027 chr2R 9324398 intron,intron CG13739 -,CG13954 - chr2R 9325912 intron,intron CG13739 -,CG13954 - chr2R 9327425 intron,intron CG13739 -,CG13954 - chr2R_7_9325001 chr2R_9325001 RAL-377 1032 chr2R 9368134 9368153 chr2R 9368206 9368239 8 82 4.5 0.0 2.2 2.5 105 chr2R 9368134 intron CG13954 - chr2R 9368186 intron CG13954 - chr2R 9368239 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-377 1033 chr2R 9378097 9378128 chr2R 9378197 9378230 5 96 15.0 9.0 12.0 0.4 133 chr2R 9378097 intron CG13954 - chr2R 9378164 intron CG13954 - chr2R 9378230 intron CG13954 - chr2R_5_9375001 chr2R_9375001 RAL-377 1034 chr2R 9407810 9407823 chr2R 9407923 9407936 4 112 14.0 10.5 12.2 0.3 126 chr2R 9407810 intron wun - chr2R 9407873 intron wun - chr2R 9407936 intron wun - chr2R_4_9405001 chr2R_9405001 RAL-377 1035 chr2R 9407824 9407852 chr2R 9407922 9407960 5 106 11.0 10.5 10.8 0.4 136 chr2R 9407824 intron wun - chr2R 9407892 intron wun - chr2R 9407960 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-377 1036 chr2R 9480058 9480105 chr2R 9490609 9490655 roo 15 10551 7.0 5.5 6.2 2.1 10597 chr2R 9480058 intergenic not near genes chr2R 9485356 intergenic not near genes chr2R 9490655 intergenic not near genes chr2R_15_9485001 chr2R_9485001 RAL-377 1037 chr2R 9510645 9510695 chr2R 9510781 9510831 16 134 1.0 1.5 1.2 7.3 186 chr2R 9510645 exon brp + chr2R 9510738 intron brp + chr2R 9510831 exon brp + chr2R_16_9510001 chr2R_9510001 RAL-377 1038 chr2R 9541612 9541651 chr2R 9541709 9541748 4 96 9.0 11.0 10.0 0.4 136 chr2R 9541612 intergenic brp +,CG1888 - chr2R 9541680 intergenic brp +,CG1888 - chr2R 9541748 intergenic brp +,CG1888 - chr2R_4_9540001 chr2R_9540001 RAL-377 1039 chr2R 9561830 9561850 chr2R 9561938 9561958 4 108 10.5 13.0 11.8 0.3 128 chr2R 9561830 3` UTR,intron CR45281 -,CG1809 + chr2R 9561894 3` UTR,intron CR45281 -,CG1809 + chr2R 9561958 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-377 1040 chr2R 9669136 9669168 chr2R 9669241 9669289 5 117 18.5 16.5 17.5 0.3 153 chr2R 9669136 intron Mmp2 - chr2R 9669212 intron Mmp2 - chr2R 9669289 intron Mmp2 - chr2R_5_9665001 chr2R_9665001 RAL-377 1041 chr2R 9726595 9726642 chr2R 9734166 9734213 17.6 14 7571 6.0 5.0 5.5 2.2 7618 chr2R 9726595 intron sqa - chr2R 9730404 intron sqa - chr2R 9734213 intron sqa - chr2R_14_9730001 chr2R_9730001 RAL-377 1042 chr2R 9746566 9746589 chr2R 9747885 9747902 4 1315 27.5 27.5 27.5 0.1 1336 chr2R 9746566 5` UTR sqa - chr2R 9747234 5` UTR sqa - chr2R 9747902 5` UTR sqa - chr2R_4_9745001 chr2R_9745001 RAL-377 1043 chr2R 9859200 9859236 chr2R 9861530 9861567 6 2330 29.0 17.0 23.0 0.2 2367 chr2R 9859200 intron CG1516 - chr2R 9860384 intron CG1516 - chr2R 9861567 intergenic CR44293 +,CG1516 - chr2R_6_9860001 chr2R_9860001 RAL-377 1044 chr2R 9869953 9869984 chr2R 9870049 9870080 7 96 14.0 13.5 13.8 0.5 127 chr2R 9869953 intron cbx - chr2R 9870016 intron cbx - chr2R 9870080 intron cbx - chr2R_7_9870001 chr2R_9870001 RAL-377 1045 chr2R 9871021 9871063 chr2R 9871527 9871568 roo 16 503 4.5 6.5 5.5 2.5 547 chr2R 9871021 intron cbx - chr2R 9871294 intron cbx - chr2R 9871568 intron,5` UTR cbx -,CG18446 + chr2R_16_9870001 chr2R_9870001 RAL-377 1046 chr2R 9896806 9896839 chr2R 9896954 9896987 6 142 13.5 10.0 11.8 0.5 181 chr2R 9896806 exon CG30007 + chr2R 9896896 exon CG30007 + chr2R 9896987 exon CG30007 + chr2R_6_9895001 chr2R_9895001 RAL-377 1047 chr2R 9935010 9935047 chr2R 9935112 9935148 7 102 14.0 15.5 14.8 0.4 138 chr2R 9935010 intron Mef2 - chr2R 9935079 intron Mef2 - chr2R 9935148 intron Mef2 - chr2R_7_9935001 chr2R_9935001 RAL-377 1048 chr2R 9945422 9945462 chr2R 9945638 9945678 BS 5 216 13.0 6.5 9.8 0.5 256 chr2R 9945422 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945678 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-377 1049 chr2R 9998082 9998092 chr2R 9998195 9998204 6 114 3.0 9.0 6.0 0.9 122 chr2R 9998082 intron Pka-R2 - chr2R 9998143 intron Pka-R2 - chr2R 9998204 intron Pka-R2 - chr2R_6_9995001 chr2R_9995001 RAL-377 1050 chr2R 10001500 10001542 chr2R 10001603 10001645 6 103 17.0 17.5 17.2 0.3 145 chr2R 10001500 intron Pka-R2 - chr2R 10001572 intron Pka-R2 - chr2R 10001645 intron Pka-R2 - chr2R_6_10000001 chr2R_10000001 RAL-377 1051 chr2R 10005541 10005570 chr2R 10005658 10005687 10 117 18.5 12.5 15.5 0.6 146 chr2R 10005541 intron Pka-R2 - chr2R 10005614 intron Pka-R2 - chr2R 10005687 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-377 1052 chr2R 10005838 10005875 chr2R 10007011 10007033 1360 10 1180 5.0 2.0 3.5 2.2 1195 chr2R 10005838 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007033 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-377 1053 chr2R 10132169 10132217 chr2R 10132269 10132317 14 100 2.0 5.0 3.5 3.1 148 chr2R 10132169 intron gem + chr2R 10132243 intron gem + chr2R 10132317 exon gem + chr2R_14_10130001 chr2R_10130001 RAL-377 1054 chr2R 10167113 10167144 chr2R 10167194 10167199 5 82 9.5 9.5 9.5 0.5 86 chr2R 10167113 intron KCNQ - chr2R 10167156 intron KCNQ - chr2R 10167199 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-377 1055 chr2R 10171098 10171135 chr2R 10171202 10171239 7 104 8.0 11.0 9.5 0.7 141 chr2R 10171098 intron KCNQ - chr2R 10171168 intron KCNQ - chr2R 10171239 intron KCNQ - chr2R_7_10170001 chr2R_10170001 RAL-377 1056 chr2R 10172618 10172662 chr2R 10172750 10172777 9 126 0.0 0.0 0.0 9.0 159 chr2R 10172618 intron KCNQ - chr2R 10172698 intron KCNQ - chr2R 10172777 intron KCNQ - chr2R_9_10170001 chr2R_10170001 RAL-377 1057 chr2R 10176857 10176913 chr2R 10186044 10186100 roo 19 9187 5.0 4.0 4.5 3.5 9243 chr2R 10176857 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186100 intron KCNQ - chr2R_19_10180001 chr2R_10180001 RAL-377 1058 chr2R 10216192 10216223 chr2R 10216289 10216321 11 95 2.5 4.5 3.5 2.4 129 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216256 intron,intron CG12912 -,Hr46 - chr2R 10216321 intron,intron CG12912 -,Hr46 - chr2R_11_10215001 chr2R_10215001 RAL-377 1059 chr2R 10225712 10225752 chr2R 10225814 10225854 14 100 2.5 4.0 3.2 3.3 142 chr2R 10225712 intron,intron CG12912 -,Hr46 - chr2R 10225783 intron,intron CG12912 -,Hr46 - chr2R 10225854 intron,intron CG12912 -,Hr46 - chr2R_14_10225001 chr2R_10225001 RAL-377 1060 chr2R 10251351 10251397 chr2R 10251449 10251495 14 98 4.5 5.0 4.8 2.4 144 chr2R 10251351 intron,intron CG12913 +,Syb - chr2R 10251423 intron,intron CG12913 +,Syb - chr2R 10251495 intron,intron CG12913 +,Syb - chr2R_14_10250001 chr2R_10250001 RAL-377 1061 chr2R 10257137 10257193 chr2R 10257248 10257304 15 111 3.5 1.0 2.2 4.7 167 chr2R 10257137 intron CG12911 + chr2R 10257220 intron CG12911 + chr2R 10257304 intron CG12911 + chr2R_15_10255001 chr2R_10255001 RAL-377 1062 chr2R 10262896 10263187 chr2R 10262995 10263294 6 104 22.5 4.5 13.5 0.4 398 chr2R 10262896 3` UTR CR30009 - chr2R 10263095 3` UTR CR30009 - chr2R 10263294 3` UTR CR30009 - chr2R_6_10260001 chr2R_10260001 RAL-377 1063 chr2R 10270546 10270596 chr2R 10270655 10270705 8 109 9.0 8.5 8.8 0.8 159 chr2R 10270546 intron CAP + chr2R 10270626 intron CAP + chr2R 10270705 intron CAP + chr2R_8_10270001 chr2R_10270001 RAL-377 1064 chr2R 10290094 10290136 chr2R 10290195 10290237 5 100 5.5 1.5 3.5 1.1 143 chr2R 10290094 intron CAP + chr2R 10290166 intron CAP + chr2R 10290237 intron CAP + chr2R_5_10290001 chr2R_10290001 RAL-377 1065 chr2R 10313301 10313350 chr2R 10313409 10313458 11 105 7.5 13.0 10.2 1.0 157 chr2R 10313301 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313458 intergenic Ndg + chr2R_11_10310001 chr2R_10310001 RAL-377 1066 chr2R 10319688 10319692 chr2R 10319806 10319810 4 118 9.5 11.5 10.5 0.3 122 chr2R 10319688 intron Ndg + chr2R 10319749 intron Ndg + chr2R 10319810 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-377 1067 chr2R 10361396 10361431 chr2R 10361503 10361508 6 97 3.5 4.5 4.0 1.2 112 chr2R 10361396 intron CG42732 - chr2R 10361452 intron CG42732 - chr2R 10361508 intron CG42732 - chr2R_6_10360001 chr2R_10360001 RAL-377 1068 chr2R 10376224 10376272 chr2R 10376328 10376381 12 108 9.5 13.0 11.2 1.0 157 chr2R 10376224 intron CG42732 - chr2R 10376302 intron CG42732 - chr2R 10376381 intron CG42732 - chr2R_12_10375001 chr2R_10375001 RAL-377 1069 chr2R 10409041 10409085 chr2R 10409138 10409181 11 96 0.0 8.0 4.0 2.2 140 chr2R 10409041 intron CG42732 - chr2R 10409111 intron CG42732 - chr2R 10409181 intron,exon CG42732 -,CG33477 - chr2R_11_10405001 chr2R_10405001 RAL-377 1070 chr2R 10411782 10411836 chr2R 10411884 10411933 17 102 2.0 6.0 4.0 3.4 151 chr2R 10411782 intron CG42732 - chr2R 10411858 intron CG42732 - chr2R 10411933 intron CG42732 - chr2R_17_10410001 chr2R_10410001 RAL-377 1071 chr2R 10417954 10417963 chr2R 10418081 10418086 4 126 0.0 6.5 3.2 1.0 132 chr2R 10417954 intergenic not near genes chr2R 10418020 intergenic not near genes chr2R 10418086 intergenic not near genes chr2R_4_10415001 chr2R_10415001 RAL-377 1072 chr2R 10443417 10443433 chr2R 10443537 10443548 7 119 0.5 6.0 3.2 1.7 131 chr2R 10443417 intron Galphao + chr2R 10443482 intron Galphao + chr2R 10443548 intron Galphao + chr2R_7_10440001 chr2R_10440001 RAL-377 1073 chr2R 10469001 10469044 chr2R 10469147 10469190 7 146 18.0 18.5 18.2 0.4 189 chr2R 10469001 intron CG11777 + chr2R 10469096 intron CG11777 + chr2R 10469190 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-377 1074 chr2R 10548003 10548045 chr2R 10548108 10548155 4 108 5.0 2.0 3.5 0.9 152 chr2R 10548003 intergenic not near genes chr2R 10548079 intergenic not near genes chr2R 10548155 intergenic not near genes chr2R_4_10545001 chr2R_10545001 RAL-377 1075 chr2R 10563229 10563244 chr2R 10563347 10563362 9 118 0.0 3.0 1.5 3.6 133 chr2R 10563229 intron psq + chr2R 10563296 intron psq + chr2R 10563362 intron psq + chr2R_9_10560001 chr2R_10560001 RAL-377 1076 chr2R 10585578 10585587 chr2R 10594161 10594165 Tirant 4 8586 6.0 3.5 4.8 0.7 8587 chr2R 10585578 intron psq + chr2R 10589872 intron psq + chr2R 10594165 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-377 1077 chr2R 10622345 10622362 chr2R 10637118 10637146 mdg1 7 14783 8.5 3.5 6.0 1.0 14801 chr2R 10622345 intron CG11883 + chr2R 10629746 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_7_10625001 chr2R_10625001 RAL-377 1078 chr2R 10671235 10671254 chr2R 10671328 10671352 6 94 4.5 2.5 3.5 1.3 117 chr2R 10671235 intergenic not near genes chr2R 10671294 intergenic not near genes chr2R 10671352 intergenic not near genes chr2R_6_10670001 chr2R_10670001 RAL-377 1079 chr2R 10743424 10743445 chr2R 10743527 10743544 4 102 13.0 9.5 11.2 0.3 120 chr2R 10743424 intron CG33144 - chr2R 10743484 intron CG33144 - chr2R 10743544 intron CG33144 - chr2R_4_10740001 chr2R_10740001 RAL-377 1080 chr2R 10761537 10761576 chr2R 10761711 10761750 6 174 14.5 9.0 11.8 0.5 213 chr2R 10761537 intron,5` UTR CG33144 -,CR43605 + chr2R 10761644 intron,5` UTR CG33144 -,CR43605 + chr2R 10761750 intron CG33144 - chr2R_6_10760001 chr2R_10760001 RAL-377 1081 chr2R 10770984 10771016 chr2R 10771078 10771117 5 99 8.0 13.0 10.5 0.4 133 chr2R 10770984 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771117 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-377 1082 chr2R 10796695 10796736 chr2R 10796814 10796855 4 116 9.0 12.5 10.8 0.3 160 chr2R 10796695 intron CG33144 - chr2R 10796775 intron CG33144 - chr2R 10796855 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-377 1083 chr2R 10851184 10851215 chr2R 10851289 10851320 6 104 11.0 10.5 10.8 0.5 136 chr2R 10851184 intron CG30015 - chr2R 10851252 intron CG30015 - chr2R 10851320 intron CG30015 - chr2R_6_10850001 chr2R_10850001 RAL-377 1084 chr2R 10860469 10860490 chr2R 10860571 10860592 4 101 9.0 0.5 4.8 0.7 123 chr2R 10860469 intron CG30015 - chr2R 10860530 intron CG30015 - chr2R 10860592 intron CG30015 - chr2R_4_10860001 chr2R_10860001 RAL-377 1085 chr2R 10865704 10865749 chr2R 10865822 10865867 9 116 7.5 6.5 7.0 1.1 163 chr2R 10865704 intron CG30015 - chr2R 10865786 intron CG30015 - chr2R 10865867 intron CG30015 - chr2R_9_10865001 chr2R_10865001 RAL-377 1086 chr2R 10871629 10871671 chr2R 10871728 10871775 9 99 10.5 11.5 11.0 0.8 146 chr2R 10871629 intron CG30015 - chr2R 10871702 intron CG30015 - chr2R 10871775 intron CG30015 - chr2R_9_10870001 chr2R_10870001 RAL-377 1087 chr2R 10909380 10909411 chr2R 10909512 10909543 7 133 11.5 11.0 11.2 0.6 163 chr2R 10909380 intergenic not near genes chr2R 10909462 intergenic Obp47a + chr2R 10909543 intergenic Obp47a + chr2R_7_10905001 chr2R_10905001 RAL-377 1088 chr2R 10922764 10922790 chr2R 10922863 10922896 5 103 6.0 11.5 8.8 0.5 132 chr2R 10922764 intergenic not near genes chr2R 10922830 intergenic not near genes chr2R 10922896 intergenic not near genes chr2R_5_10920001 chr2R_10920001 RAL-377 1089 chr2R 10937793 10937831 chr2R 10937951 10937989 10 158 9.5 9.0 9.2 1.0 196 chr2R 10937793 intergenic not near genes chr2R 10937891 intergenic not near genes chr2R 10937989 intergenic Spn47C - chr2R_10_10935001 chr2R_10935001 RAL-377 1090 chr2R 10947076 10947122 chr2R 10947183 10947220 5 105 3.5 0.0 1.8 1.8 144 chr2R 10947076 5` UTR CR45228 + chr2R 10947148 intergenic CR45228 + chr2R 10947220 intergenic CR45228 + chr2R_5_10945001 chr2R_10945001 RAL-377 1091 chr2R 10959072 10959106 chr2R 10959171 10959205 11 98 3.0 1.5 2.2 3.4 133 chr2R 10959072 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959205 intergenic not near genes chr2R_11_10955001 chr2R_10955001 RAL-377 1092 chr2R 10979652 10979684 chr2R 10980142 10980166 297 4 482 2.5 3.5 3.0 1.0 514 chr2R 10979652 intergenic not near genes chr2R 10979909 intergenic not near genes chr2R 10980166 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-377 1093 chr2R 11009797 11009847 chr2R 11018991 11019041 roo 11 9189 4.5 4.5 4.5 2.0 9244 chr2R 11009797 intron luna - chr2R 11014419 intron luna - chr2R 11019041 intron luna - chr2R_11_11010001 chr2R_11010001 RAL-377 1094 chr2R 11019865 11019908 chr2R 11024947 11024994 jockey 6 5079 1.5 0.5 1.0 3.0 5129 chr2R 11019865 intron luna - chr2R 11022430 intron luna - chr2R 11024994 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-377 1095 chr2R 11102863 11102880 chr2R 11102965 11102966 7 100 9.0 0.0 4.5 1.3 103 chr2R 11102863 intron luna - chr2R 11102914 intron luna - chr2R 11102966 intron luna - chr2R_7_11100001 chr2R_11100001 RAL-377 1096 chr2R 11147053 11147104 chr2R 11147161 11147212 4 108 16.0 18.0 17.0 0.2 159 chr2R 11147053 intron,3` UTR CG13229 -,CG13231 + chr2R 11147132 intron CG13229 - chr2R 11147212 intron CG13229 - chr2R_4_11145001 chr2R_11145001 RAL-377 1097 chr2R 11165982 11166025 chr2R 11166122 11166148 9 138 24.5 15.5 20.0 0.4 166 chr2R 11165982 intron,intron CG13229 -,shn + chr2R 11166065 intron,intron CG13229 -,shn + chr2R 11166148 intron,intron CG13229 -,shn + chr2R_9_11165001 chr2R_11165001 RAL-377 1098 chr2R 11179248 11179286 chr2R 11179354 11179392 20 103 8.0 5.0 6.5 2.7 144 chr2R 11179248 intron shn + chr2R 11179320 intron shn + chr2R 11179392 intron shn + chr2R_20_11175001 chr2R_11175001 RAL-377 1099 chr2R 11207812 11207847 chr2R 11208024 11208048 BS 16 209 3.0 9.0 6.0 2.3 236 chr2R 11207812 intron shn + chr2R 11207930 intron shn + chr2R 11208048 intron shn + chr2R_16_11205001 chr2R_11205001 RAL-377 1100 chr2R 11249161 11249166 chr2R 11249297 11249312 4 144 7.5 9.5 8.5 0.4 151 chr2R 11249161 intergenic CG43112 + chr2R 11249236 intergenic CG43112 + chr2R 11249312 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-377 1101 chr2R 11263828 11263842 chr2R 11263964 11263978 4 136 0.0 9.0 4.5 0.7 150 chr2R 11263828 intergenic not near genes chr2R 11263903 intergenic not near genes chr2R 11263978 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-377 1102 chr2R 11292974 11292980 chr2R 11293057 11293075 4 92 6.0 6.0 6.0 0.6 101 chr2R 11292974 exon,3` UTR dare -,CG30033 + chr2R 11293024 5` UTR,3` UTR dare -,CG30033 + chr2R 11293075 5` UTR,3` UTR dare -,CG30033 + chr2R_4_11290001 chr2R_11290001 RAL-377 1103 chr2R 11297608 11297650 chr2R 11301949 11301991 flea 6 4341 6.5 9.5 8.0 0.7 4383 chr2R 11297608 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11301991 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-377 1104 chr2R 11344147 11344152 chr2R 11344263 11344267 4 116 0.0 9.0 4.5 0.7 120 chr2R 11344147 intergenic alphaTry - chr2R 11344207 intergenic alphaTry - chr2R 11344267 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-377 1105 chr2R 11415500 11415551 chr2R 11418668 11418705 opus 20 3161 1.5 6.5 4.0 4.0 3205 chr2R 11415500 intron Drip - chr2R 11417102 intron Drip - chr2R 11418705 intron Drip - chr2R_20_11415001 chr2R_11415001 RAL-377 1106 chr2R 11472627 11472675 chr2R 11473844 11473888 pogo 19 1216 8.5 7.0 7.8 2.2 1261 chr2R 11472627 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473888 intergenic not near genes chr2R_19_11470001 chr2R_11470001 RAL-377 1107 chr2R 11516760 11516814 chr2R 11516862 11516909 15 102 4.0 4.5 4.2 2.9 149 chr2R 11516760 intergenic not near genes chr2R 11516834 intergenic not near genes chr2R 11516909 intergenic not near genes chr2R_15_11515001 chr2R_11515001 RAL-377 1108 chr2R 11555375 11555419 chr2R 11555730 11555774 8 355 1.0 9.5 5.2 1.3 399 chr2R 11555375 intergenic not near genes chr2R 11555574 intergenic not near genes chr2R 11555774 intergenic not near genes chr2R_8_11555001 chr2R_11555001 RAL-377 1109 chr2R 11555477 11555524 chr2R 11555613 11555660 4 136 0.0 2.5 1.2 1.8 183 chr2R 11555477 intergenic not near genes chr2R 11555568 intergenic not near genes chr2R 11555660 intergenic not near genes chr2R_4_11555001 chr2R_11555001 RAL-377 1110 chr2R 11567321 11567334 chr2R 11567418 11567431 4 97 5.5 13.0 9.2 0.4 110 chr2R 11567321 intergenic not near genes chr2R 11567376 intergenic not near genes chr2R 11567431 intergenic not near genes chr2R_4_11565001 chr2R_11565001 RAL-377 1111 chr2R 11587223 11587252 chr2R 11587326 11587345 6 98 12.0 8.5 10.2 0.5 122 chr2R 11587223 intron tou - chr2R 11587284 intron tou - chr2R 11587345 intron tou - chr2R_6_11585001 chr2R_11585001 RAL-377 1112 chr2R 11635513 11635558 chr2R 11635912 11635957 8 396 21.5 13.0 17.2 0.4 444 chr2R 11635513 intron CG9005 - chr2R 11635735 intron CG9005 - chr2R 11635957 intron CG9005 - chr2R_8_11635001 chr2R_11635001 RAL-377 1113 chr2R 11670815 11670869 chr2R 11670933 11670977 7 114 8.0 6.5 7.2 0.9 162 chr2R 11670815 intron,intron Roc2 -,Tret1-1 + chr2R 11670896 intron,intron Roc2 -,Tret1-1 + chr2R 11670977 intron,intron Roc2 -,Tret1-1 + chr2R_7_11670001 chr2R_11670001 RAL-377 1114 chr2R 11672685 11672715 chr2R 11676107 11676143 5 3429 19.5 8.5 14.0 0.3 3458 chr2R 11672685 intron,intron Roc2 -,Tret1-1 + chr2R 11674414 intron,exon Roc2 -,Tret1-1 + chr2R 11676143 intron,intron Roc2 -,Tret1-2 + chr2R_5_11670001 chr2R_11670001 RAL-377 1115 chr2R 11775916 11775967 chr2R 11776018 11776040 6 97 6.5 6.5 6.5 0.8 124 chr2R 11775916 intron ths + chr2R 11775978 intron ths + chr2R 11776040 intron ths + chr2R_6_11775001 chr2R_11775001 RAL-377 1116 chr2R 11861984 11862024 chr2R 11862089 11862129 10 105 12.5 14.0 13.2 0.7 145 chr2R 11861984 3` UTR CG34230 + chr2R 11862056 intergenic CG34230 +,TwdlBeta - chr2R 11862129 intergenic CG34230 +,TwdlBeta - chr2R_10_11860001 chr2R_11860001 RAL-377 1117 chr2R 11931207 11931239 chr2R 11931319 11931342 10 106 9.0 8.5 8.8 1.0 135 chr2R 11931207 intergenic not near genes chr2R 11931274 intergenic not near genes chr2R 11931342 intergenic not near genes chr2R_10_11930001 chr2R_11930001 RAL-377 1118 chr2R 11945873 11945911 chr2R 11945969 11946006 6 96 10.5 9.5 10.0 0.5 133 chr2R 11945873 intron CG13188 + chr2R 11945940 intron CG13188 + chr2R 11946006 intron CG13188 + chr2R_6_11945001 chr2R_11945001 RAL-377 1119 chr2R 12087267 12087273 chr2R 12087364 12087375 4 101 12.5 17.5 15.0 0.2 108 chr2R 12087267 3` UTR jeb - chr2R 12087321 3` UTR jeb - chr2R 12087375 3` UTR jeb - chr2R_4_12085001 chr2R_12085001 RAL-377 1120 chr2R 12093931 12093982 chr2R 12094064 12094114 9 129 10.5 12.5 11.5 0.7 183 chr2R 12093931 intron jeb - chr2R 12094022 intron jeb - chr2R 12094114 intron jeb - chr2R_9_12090001 chr2R_12090001 RAL-377 1121 chr2R 12124813 12124856 chr2R 12124917 12124960 7 104 6.5 2.5 4.5 1.3 147 chr2R 12124813 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124960 intergenic not near genes chr2R_7_12120001 chr2R_12120001 RAL-377 1122 chr2R 12146455 12146496 chr2R 12147597 12147612 4 1123 27.0 18.0 22.5 0.2 1157 chr2R 12146455 intron,3` UTR Hen1 +,CG8878 - chr2R 12147034 intron,exon Hen1 +,CG8878 - chr2R 12147612 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-377 1123 chr2R 12145909 12145967 chr2R 12148597 12148640 13 2677 38.0 19.5 28.8 0.4 2731 chr2R 12145909 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_13_12145001 chr2R_12145001 RAL-377 1124 chr2R 12178565 12178601 chr2R 12178765 12178796 7 199 13.0 15.0 14.0 0.5 231 chr2R 12178565 intergenic EndoG -,CR45264 + chr2R 12178680 intergenic EndoG -,CR45264 + chr2R 12178796 intergenic CR45264 +,EndoG - chr2R_7_12175001 chr2R_12175001 RAL-377 1125 chr2R 12185987 12186032 chr2R 12186102 12186131 17 112 17.0 13.0 15.0 1.1 144 chr2R 12185987 intron Cyp6g1 + chr2R 12186059 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_17_12185001 chr2R_12185001 RAL-377 1126 chr2R 12185223 12185236 chr2R 12188138 12188142 4 2911 26.0 55.0 40.5 0.1 2919 chr2R 12185223 3` UTR,exon CG13175 +,CG33964 + chr2R 12186682 exon Cyp6g1 + chr2R 12188142 3` UTR Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-377 1127 chr2R 12187474 12187523 chr2R 12190077 12190123 7 2605 37.0 26.0 31.5 0.2 2649 chr2R 12187474 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_7_12185001 chr2R_12185001 RAL-377 1128 chr2R 12210117 12210164 chr2R 12210217 12210264 21 101 2.5 3.0 2.8 5.5 147 chr2R 12210117 exon Sr-CII - chr2R 12210190 intron Sr-CII - chr2R 12210264 exon Sr-CII - chr2R_21_12210001 chr2R_12210001 RAL-377 1129 chr2R 12236211 12236229 chr2R 12236322 12236340 7 110 10.5 1.5 6.0 1.0 129 chr2R 12236211 intergenic not near genes chr2R 12236276 intergenic not near genes chr2R 12236340 intergenic not near genes chr2R_7_12235001 chr2R_12235001 RAL-377 1130 chr2R 12240741 12240749 chr2R 12240837 12240845 4 96 3.5 0.0 1.8 1.4 104 chr2R 12240741 exon CG13170 + chr2R 12240793 3` UTR CG13170 + chr2R 12240845 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-377 1131 chr2R 12255699 12255752 chr2R 12255838 12255891 16 138 3.5 4.5 4.0 3.2 192 chr2R 12255699 3` UTR CG13168 + chr2R 12255795 intergenic CG13168 + chr2R 12255891 intergenic CG13168 + chr2R_16_12255001 chr2R_12255001 RAL-377 1132 chr2R 12279045 12279057 chr2R 12279178 12279190 6 133 8.0 12.5 10.2 0.5 145 chr2R 12279045 intergenic Cam + chr2R 12279118 intergenic Cam + chr2R 12279190 intergenic Cam + chr2R_6_12275001 chr2R_12275001 RAL-377 1133 chr2R 12301855 12301904 chr2R 12301952 12301977 10 94 11.5 9.0 10.2 0.9 122 chr2R 12301855 intron CG8850 - chr2R 12301916 intron CG8850 - chr2R 12301977 intron CG8850 - chr2R_10_12300001 chr2R_12300001 RAL-377 1134 chr2R 12363366 12363397 chr2R 12363818 12363847 11 452 17.5 12.5 15.0 0.7 481 chr2R 12363366 intergenic CG30043 + chr2R 12363606 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_11_12360001 chr2R_12360001 RAL-377 1135 chr2R 12444448 12444463 chr2R 12444630 12444630 5 184 7.0 7.5 7.2 0.6 182 chr2R 12444448 intron Dyb + chr2R 12444539 intron Dyb + chr2R 12444630 intron Dyb + chr2R_5_12440001 chr2R_12440001 RAL-377 1136 chr2R 12492093 12492123 chr2R 12492188 12492237 9 106 9.0 4.0 6.5 1.2 144 chr2R 12492093 intron fdl - chr2R 12492165 intron fdl - chr2R 12492237 intron fdl - chr2R_9_12490001 chr2R_12490001 RAL-377 1137 chr2R 12501681 12501722 chr2R 12503863 12503903 Rt1c 9 2179 1.0 5.5 3.2 2.1 2222 chr2R 12501681 intron fdl - chr2R 12502792 intron fdl - chr2R 12503903 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-377 1138 chr2R 12565274 12565310 chr2R 12565379 12565415 7 105 4.0 0.0 2.0 2.3 141 chr2R 12565274 intergenic CG33775 - chr2R 12565344 intergenic CG33775 - chr2R 12565415 intergenic not near genes chr2R_7_12565001 chr2R_12565001 RAL-377 1139 chr2R 12565546 12565597 chr2R 12565944 12566000 11 399 0.0 4.5 2.2 3.4 454 chr2R 12565546 intergenic not near genes chr2R 12565773 intergenic Cyp301a1 + chr2R 12566000 intergenic Cyp301a1 + chr2R_11_12565001 chr2R_12565001 RAL-377 1140 chr2R 12664485 12664488 chr2R 22524386 22524387 4 9859900 9.0 8.5 8.8 0.4 9859902 chr2R 12664485 intron nemy - chr2R 17594436 intron lack + chr2R 22524387 intron px - chr2R_4_17590001 chr2R_17590001 RAL-377 1141 chr2R 12665383 12665412 chr2R 12665485 12665515 4 103 11.5 9.0 10.2 0.4 132 chr2R 12665383 intron nemy - chr2R 12665449 intron nemy - chr2R 12665515 intron nemy - chr2R_4_12665001 chr2R_12665001 RAL-377 1142 chr2R 12670363 12670389 chr2R 12670490 12670516 4 126 15.0 6.0 10.5 0.3 153 chr2R 12670363 intergenic CG42708 -,nemy - chr2R 12670440 intergenic CG42708 -,nemy - chr2R 12670516 3` UTR CG42708 - chr2R_4_12670001 chr2R_12670001 RAL-377 1143 chr2R 12677377 12677408 chr2R 12677481 12677512 9 104 13.5 18.5 16.0 0.5 135 chr2R 12677377 intron CG42708 - chr2R 12677444 intron CG42708 - chr2R 12677512 intron CG42708 - chr2R_9_12675001 chr2R_12675001 RAL-377 1144 chr2R 12707506 12707546 chr2R 12715892 12715932 roo 17 8385 3.0 3.5 3.2 4.0 8426 chr2R 12707506 intron CG42663 + chr2R 12711719 intron CG42663 + chr2R 12715932 intron CG42663 + chr2R_17_12710001 chr2R_12710001 RAL-377 1145 chr2R 12728857 12728906 chr2R 12728976 12729024 9 119 0.0 7.0 3.5 2.0 167 chr2R 12728857 intron CG42663 + chr2R 12728940 intron CG42663 + chr2R 12729024 intron CG42663 + chr2R_9_12725001 chr2R_12725001 RAL-377 1146 chr2R 12739117 12739151 chr2R 12739213 12739245 4 94 5.0 3.5 4.2 0.8 128 chr2R 12739117 intron CG42663 + chr2R 12739181 intron CG42663 + chr2R 12739245 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-377 1147 chr2R 12748770 12748795 chr2R 12748878 12748903 10 108 0.0 1.5 0.8 5.6 133 chr2R 12748770 intron CG42663 + chr2R 12748836 intron CG42663 + chr2R 12748903 intron CG42663 + chr2R_10_12745001 chr2R_12745001 RAL-377 1148 chr2R 12777799 12777827 chr2R 12777928 12777956 7 129 0.0 3.0 1.5 2.8 157 chr2R 12777799 5` UTR CR45266 + chr2R 12777878 5` UTR CR45266 + chr2R 12777956 5` UTR CR45266 + chr2R_7_12775001 chr2R_12775001 RAL-377 1149 chr2R 12789280 12789320 chr2R 12797663 12797703 roo 4 8378 3.5 4.0 3.8 0.8 8423 chr2R 12789280 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797703 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-377 1150 chr2R 12807981 12808017 chr2R 12808079 12808115 5 98 15.5 16.0 15.8 0.3 134 chr2R 12807981 intergenic CG17580 + chr2R 12808048 intergenic CG17580 + chr2R 12808115 intergenic CG17580 + chr2R_5_12805001 chr2R_12805001 RAL-377 1151 chr2R 12897458 12897480 chr2R 12897569 12897591 9 111 0.0 0.0 0.0 9.0 133 chr2R 12897458 intron vg + chr2R 12897524 intron vg + chr2R 12897591 intron vg + chr2R_9_12895001 chr2R_12895001 RAL-377 1152 chr2R 12964345 12964376 chr2R 12964520 12964551 10 175 16.5 17.0 16.8 0.6 206 chr2R 12964345 intergenic not near genes chr2R 12964448 intergenic not near genes chr2R 12964551 intergenic not near genes chr2R_10_12960001 chr2R_12960001 RAL-377 1153 chr2R 12982111 12982125 chr2R 12982285 12982299 4 174 17.5 17.0 17.2 0.2 188 chr2R 12982111 intergenic not near genes chr2R 12982205 intergenic not near genes chr2R 12982299 intergenic not near genes chr2R_4_12980001 chr2R_12980001 RAL-377 1154 chr2R 13009875 13009924 chr2R 13009975 13010024 7 100 7.5 6.5 7.0 0.9 149 chr2R 13009875 intergenic not near genes chr2R 13009950 intergenic not near genes chr2R 13010024 intergenic not near genes chr2R_7_13005001 chr2R_13005001 RAL-377 1155 chr2R 13017694 13017747 chr2R 13017804 13017857 10 110 7.0 8.5 7.8 1.1 163 chr2R 13017694 intergenic not near genes chr2R 13017776 intergenic not near genes chr2R 13017857 intergenic not near genes chr2R_10_13015001 chr2R_13015001 RAL-377 1156 chr2R 13136823 13136865 chr2R 13141641 13141683 Doc 14 4817 7.5 2.0 4.8 2.4 4860 chr2R 13136823 exon Cap-G + chr2R 13139253 intron Cap-G + chr2R 13141683 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-377 1157 chr2R 13170695 13170746 chr2R 13170804 13170855 9 108 20.5 19.5 20.0 0.4 160 chr2R 13170695 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170775 intergenic CR45142 -,Spt-I + chr2R 13170855 intergenic CR45142 -,Spt-I + chr2R_9_13170001 chr2R_13170001 RAL-377 1158 chr2R 13196554 13196586 chr2R 13197058 13197090 6 502 13.5 18.5 16.0 0.4 536 chr2R 13196554 intergenic not near genes chr2R 13196822 intergenic not near genes chr2R 13197090 intergenic not near genes chr2R_6_13195001 chr2R_13195001 RAL-377 1159 chr2R 13258538 13258571 chr2R 13259804 13259820 5 1263 16.5 0.5 8.5 0.5 1282 chr2R 13258538 intergenic CG10799 + chr2R 13259179 intergenic not near genes chr2R 13259820 intergenic CG42319 + chr2R_5_13255001 chr2R_13255001 RAL-377 1160 chr2R 13305485 13305511 chr2R 13305587 13305606 5 99 11.0 13.0 12.0 0.4 121 chr2R 13305485 intergenic not near genes chr2R 13305546 intergenic not near genes chr2R 13305606 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-377 1161 chr2R 13309647 13309682 chr2R 13309785 13309820 9 137 8.5 3.5 6.0 1.3 173 chr2R 13309647 intergenic not near genes chr2R 13309734 intergenic not near genes chr2R 13309820 intergenic not near genes chr2R_9_13305001 chr2R_13305001 RAL-377 1162 chr2R 13321914 13321953 chr2R 13322040 13322079 5 126 10.0 15.0 12.5 0.4 165 chr2R 13321914 intergenic not near genes chr2R 13321996 intergenic not near genes chr2R 13322079 intergenic not near genes chr2R_5_13320001 chr2R_13320001 RAL-377 1163 chr2R 13368739 13368787 chr2R 13368870 13368918 5 131 13.5 2.5 8.0 0.6 179 chr2R 13368739 intergenic not near genes chr2R 13368828 intergenic not near genes chr2R 13368918 intergenic not near genes chr2R_5_13365001 chr2R_13365001 RAL-377 1164 chr2R 13387132 13387158 chr2R 13387234 13387252 4 100 5.0 8.0 6.5 0.5 120 chr2R 13387132 intergenic not near genes chr2R 13387192 intergenic not near genes chr2R 13387252 intergenic not near genes chr2R_4_13385001 chr2R_13385001 RAL-377 1165 chr2R 13403902 13403938 chr2R 13404007 13404043 6 105 10.5 10.5 10.5 0.5 141 chr2R 13403902 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404043 intergenic not near genes chr2R_6_13400001 chr2R_13400001 RAL-377 1166 chr2R 13431470 13431520 chr2R 13431569 13431603 15 98 13.5 14.5 14.0 1.0 133 chr2R 13431470 intron CG42321 - chr2R 13431536 intron CG42321 - chr2R 13431603 intron CG42321 - chr2R_15_13430001 chr2R_13430001 RAL-377 1167 chr2R 13432916 13432964 chr2R 13433012 13433060 16 95 16.5 14.0 15.2 1.0 144 chr2R 13432916 intron CG42321 - chr2R 13432988 intron CG42321 - chr2R 13433060 intron,5` UTR CG42321 -,CG30065 + chr2R_16_13430001 chr2R_13430001 RAL-377 1168 chr2R 13439083 13439225 chr2R 13439218 13439321 12 136 4.0 2.5 3.2 2.9 238 chr2R 13439083 intergenic CG42321 -,cnn - chr2R 13439202 intergenic cnn -,CG42321 - chr2R 13439321 3` UTR cnn - chr2R_12_13435001 chr2R_13435001 RAL-377 1169 chr2R 13532501 13532545 chr2R 13532637 13532681 12 136 4.5 5.5 5.0 2.0 180 chr2R 13532501 intron Vmat - chr2R 13532591 intron Vmat - chr2R 13532681 intron Vmat - chr2R_12_13530001 chr2R_13530001 RAL-377 1170 chr2R 13540379 13540410 chr2R 13540643 13540680 4 268 12.5 14.5 13.5 0.3 301 chr2R 13540379 intron CG6145 - chr2R 13540530 intron CG6145 - chr2R 13540680 intron CG6145 - chr2R_4_13540001 chr2R_13540001 RAL-377 1171 chr2R 13544544 13544591 chr2R 13544640 13544687 7 96 6.0 10.5 8.2 0.8 143 chr2R 13544544 intron CG6145 - chr2R 13544616 intron CG6145 - chr2R 13544687 intron CG6145 - chr2R_7_13540001 chr2R_13540001 RAL-377 1172 chr2R 13547063 13547099 chr2R 13547277 13547314 7 215 2.0 0.5 1.2 3.2 251 chr2R 13547063 intron CG6145 - chr2R 13547188 intron CG6145 - chr2R 13547314 intron CG6145 - chr2R_7_13545001 chr2R_13545001 RAL-377 1173 chr2R 13566252 13566279 chr2R 13566347 13566379 5 99 9.5 8.5 9.0 0.5 127 chr2R 13566252 intergenic not near genes chr2R 13566316 intergenic not near genes chr2R 13566379 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-377 1174 chr2R 13580484 13580524 chr2R 13580854 13580894 jockey 11 368 2.5 4.0 3.2 2.6 410 chr2R 13580484 3` UTR CG6191 - chr2R 13580689 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580894 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-377 1175 chr2R 13602648 13602668 chr2R 13602747 13602767 7 97 14.0 15.0 14.5 0.5 119 chr2R 13602648 intergenic not near genes chr2R 13602708 intergenic not near genes chr2R 13602767 intergenic not near genes chr2R_7_13600001 chr2R_13600001 RAL-377 1176 chr2R 13613262 13613308 chr2R 13613358 13613404 8 96 17.5 17.5 17.5 0.4 142 chr2R 13613262 intergenic not near genes chr2R 13613333 intergenic not near genes chr2R 13613404 intergenic not near genes chr2R_8_13610001 chr2R_13610001 RAL-377 1177 chr2R 13670305 13670328 chr2R 13670504 13670521 4 198 21.5 16.0 18.8 0.2 216 chr2R 13670305 intron,exon fas +,CG18368 + chr2R 13670413 intron,exon fas +,CG18368 + chr2R 13670521 intron,exon fas +,CG18368 + chr2R_4_13670001 chr2R_13670001 RAL-377 1178 chr2R 13691436 13691467 chr2R 13691627 13691669 6 200 9.5 4.5 7.0 0.8 233 chr2R 13691436 intron fas + chr2R 13691552 intron fas + chr2R 13691669 intron fas + chr2R_6_13690001 chr2R_13690001 RAL-377 1179 chr2R 13704253 13704262 chr2R 13704363 13704372 4 110 14.5 11.5 13.0 0.3 119 chr2R 13704253 intron fas + chr2R 13704312 intron fas + chr2R 13704372 intron fas + chr2R_4_13700001 chr2R_13700001 RAL-377 1180 chr2R 13709796 13709839 chr2R 13709909 13709964 4 120 6.5 0.0 3.2 1.0 168 chr2R 13709796 intron fas + chr2R 13709880 intron fas + chr2R 13709964 intron fas + chr2R_4_13705001 chr2R_13705001 RAL-377 1181 chr2R 13721196 13721225 chr2R 13721286 13721299 7 95 3.0 3.0 3.0 1.8 103 chr2R 13721196 intron fas + chr2R 13721248 intron fas + chr2R 13721299 intron fas + chr2R_7_13720001 chr2R_13720001 RAL-377 1182 chr2R 13728116 13728143 chr2R 13735797 13735824 opus 6 7681 7.5 3.0 5.2 1.0 7708 chr2R 13728116 intron fas + chr2R 13731970 intron fas + chr2R 13735824 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-377 1183 chr2R 13738905 13738940 chr2R 13739010 13739063 6 120 2.5 2.5 2.5 1.7 158 chr2R 13738905 intron fas + chr2R 13738984 intron fas + chr2R 13739063 intron fas + chr2R_6_13735001 chr2R_13735001 RAL-377 1184 chr2R 13749481 13749530 chr2R 13749590 13749609 8 105 8.5 9.5 9.0 0.8 128 chr2R 13749481 intergenic fas + chr2R 13749545 intergenic fas + chr2R 13749609 intergenic fas + chr2R_8_13745001 chr2R_13745001 RAL-377 1185 chr2R 13784097 13784139 chr2R 13784345 13784387 4 247 11.0 8.5 9.8 0.4 290 chr2R 13784097 intron,5` UTR Cpr50Ca +,CR43810 + chr2R 13784242 intron,intron Cpr50Ca +,CR43810 + chr2R 13784387 intron,5` UTR Cpr50Ca +,CR43810 + chr2R_4_13780001 chr2R_13780001 RAL-377 1186 chr2R 13790311 13790320 chr2R 13790407 13790416 4 96 11.5 0.0 5.8 0.6 105 chr2R 13790311 intergenic not near genes chr2R 13790364 intergenic not near genes chr2R 13790416 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-377 1187 chr2R 13803144 13803180 chr2R 13803313 13803355 6 164 11.0 8.5 9.8 0.6 211 chr2R 13803144 intron Cpr50Cb + chr2R 13803250 intron Cpr50Cb + chr2R 13803355 intron Cpr50Cb + chr2R_6_13800001 chr2R_13800001 RAL-377 1188 chr2R 13805320 13805334 chr2R 13805598 13805612 6 278 11.5 12.5 12.0 0.5 292 chr2R 13805320 intergenic Cpr50Cb +,stj + chr2R 13805466 intergenic Cpr50Cb +,stj + chr2R 13805612 intergenic stj +,Cpr50Cb + chr2R_6_13805001 chr2R_13805001 RAL-377 1189 chr2R 13905574 13905628 chr2R 13907576 13907629 Rt1a 10 2000 3.0 1.5 2.2 3.1 2055 chr2R 13905574 intron shot - chr2R 13906602 intron shot - chr2R 13907629 intron shot - chr2R_10_13905001 chr2R_13905001 RAL-377 1190 chr2R 13925830 13925872 chr2R 13926026 13926068 7 196 8.5 8.0 8.2 0.8 238 chr2R 13925830 intron shot - chr2R 13925949 intron shot - chr2R 13926068 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-377 1191 chr2R 13963492 13963535 chr2R 13963600 13963643 9 108 21.5 17.5 19.5 0.4 151 chr2R 13963492 intron Cp1 + chr2R 13963568 intron Cp1 + chr2R 13963643 intron Cp1 + chr2R_9_13960001 chr2R_13960001 RAL-377 1192 chr2R 14018144 14018180 chr2R 14018248 14018253 13 101 13.5 15.0 14.2 0.9 109 chr2R 14018144 intron mam + chr2R 14018198 intron mam + chr2R 14018253 intron mam + chr2R_13_14015001 chr2R_14015001 RAL-377 1193 chr2R 14037242 14037289 chr2R 14037345 14037359 4 95 9.5 13.0 11.2 0.3 117 chr2R 14037242 intron mam + chr2R 14037300 intron mam + chr2R 14037359 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-377 1194 chr2R 14071707 14071759 chr2R 14072078 14072130 4 371 4.5 13.0 8.8 0.4 423 chr2R 14071707 intron Prosap - chr2R 14071918 intron Prosap - chr2R 14072130 intron Prosap - chr2R_4_14070001 chr2R_14070001 RAL-377 1195 chr2R 14078034 14078104 chr2R 14078153 14078205 5 105 6.5 8.5 7.5 0.6 171 chr2R 14078034 intron Prosap - chr2R 14078120 intron Prosap - chr2R 14078205 intron Prosap - chr2R_5_14075001 chr2R_14075001 RAL-377 1196 chr2R 14141935 14141948 chr2R 14142060 14142073 8 125 9.5 8.0 8.8 0.8 138 chr2R 14141935 intergenic not near genes chr2R 14142004 intergenic not near genes chr2R 14142073 intergenic not near genes chr2R_8_14140001 chr2R_14140001 RAL-377 1197 chr2R 14142424 14142475 chr2R 14142534 14142585 19 110 4.5 2.0 3.2 4.5 161 chr2R 14142424 intergenic not near genes chr2R 14142504 intergenic not near genes chr2R 14142585 intergenic not near genes chr2R_19_14140001 chr2R_14140001 RAL-377 1198 chr2R 14168361 14168386 chr2R 14168470 14168495 4 108 12.0 12.0 12.0 0.3 134 chr2R 14168361 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168428 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168495 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_4_14165001 chr2R_14165001 RAL-377 1199 chr2R 14235454 14235483 chr2R 14235554 14235583 7 100 13.5 9.0 11.2 0.6 129 chr2R 14235454 intergenic Opa1 -,CG8485 - chr2R 14235518 intergenic Opa1 -,CG8485 - chr2R 14235583 intergenic Opa1 -,CG8485 - chr2R_7_14235001 chr2R_14235001 RAL-377 1200 chr2R 14266754 14266790 chr2R 14266850 14266883 9 92 9.5 11.5 10.5 0.8 129 chr2R 14266754 intron CG8547 - chr2R 14266818 intron CG8547 - chr2R 14266883 intron CG8547 - chr2R_9_14265001 chr2R_14265001 RAL-377 1201 chr2R 14277369 14277605 chr2R 14277461 14277707 10 100 12.0 18.5 15.2 0.6 338 chr2R 14277369 5` UTR Ih + chr2R 14277538 5` UTR Ih + chr2R 14277707 5` UTR Ih + chr2R_10_14275001 chr2R_14275001 RAL-377 1202 chr2R 14285032 14285049 chr2R 14285149 14285166 4 117 16.0 13.0 14.5 0.3 134 chr2R 14285032 intron Ih + chr2R 14285099 intron Ih + chr2R 14285166 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-377 1203 chr2R 14294809 14294860 chr2R 14294909 14294960 19 99 14.5 13.0 13.8 1.3 151 chr2R 14294809 intron Ih + chr2R 14294884 intron Ih + chr2R 14294960 intron Ih + chr2R_19_14290001 chr2R_14290001 RAL-377 1204 chr2R 14352696 14352720 chr2R 14352810 14352834 4 114 12.5 20.0 16.2 0.2 138 chr2R 14352696 exon CG8613 + chr2R 14352765 intron CG8613 + chr2R 14352834 intron CG8613 + chr2R_4_14350001 chr2R_14350001 RAL-377 1205 chr2R 14357556 14357756 chr2R 14357662 14357898 15 122 16.0 16.0 16.0 0.9 342 chr2R 14357556 intergenic CG8617 -,Arc1 - chr2R 14357727 intergenic Arc1 -,CG8617 - chr2R 14357898 intergenic Arc1 - chr2R_15_14355001 chr2R_14355001 RAL-377 1206 chr2R 14393869 14393898 chr2R 14393974 14394000 4 104 8.0 9.5 8.8 0.4 131 chr2R 14393869 intergenic not near genes chr2R 14393934 intergenic not near genes chr2R 14394000 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-377 1207 chr2R 14394214 14394223 chr2R 14399023 14399032 Doc 5 4809 14.0 3.0 8.5 0.5 4818 chr2R 14394214 intergenic not near genes chr2R 14396623 intergenic not near genes chr2R 14399032 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-377 1208 chr2R 14467287 14467298 chr2R 14476465 14476470 roo 4 9176 4.5 4.0 4.2 0.8 9183 chr2R 14467287 intergenic not near genes chr2R 14471878 intergenic not near genes chr2R 14476470 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-377 1209 chr2R 14467316 14467326 chr2R 14476447 14476504 roo 7 9171 0.0 2.5 1.2 3.2 9188 chr2R 14467316 intergenic not near genes chr2R 14471910 intergenic not near genes chr2R 14476504 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-377 1210 chr2R 14497376 14497415 chr2R 14498559 14498612 1360 8 1191 1.0 4.0 2.5 2.3 1236 chr2R 14497376 3` UTR Cpsf160 - chr2R 14497994 intron Cpsf160 - chr2R 14498612 3` UTR Cpsf160 - chr2R_8_14495001 chr2R_14495001 RAL-377 1211 chr2R 14514463 14514498 chr2R 14514579 14514601 4 108 1.0 3.5 2.2 1.2 138 chr2R 14514463 intron,intron Cpr51A -,CG30197 + chr2R 14514532 intron,intron Cpr51A -,CG30197 + chr2R 14514601 intron,intron Cpr51A -,CG30197 + chr2R_4_14510001 chr2R_14510001 RAL-377 1212 chr2R 14541233 14541255 chr2R 14541510 14541532 5 277 7.5 11.0 9.2 0.5 299 chr2R 14541233 intron ttv + chr2R 14541382 intron ttv + chr2R 14541532 intron ttv + chr2R_5_14540001 chr2R_14540001 RAL-377 1213 chr2R 14542737 14542781 chr2R 14542854 14542898 5 116 8.0 11.5 9.8 0.5 161 chr2R 14542737 intron ttv + chr2R 14542818 intron ttv + chr2R 14542898 intron ttv + chr2R_5_14540001 chr2R_14540001 RAL-377 1214 chr2R 14550518 14550558 chr2R 14550617 14550657 6 98 6.5 10.5 8.5 0.6 139 chr2R 14550518 intron ttv + chr2R 14550588 intron ttv + chr2R 14550657 intron ttv + chr2R_6_14550001 chr2R_14550001 RAL-377 1215 chr2R 14565547 14565585 chr2R 14565644 14565682 6 96 1.5 3.0 2.2 1.9 135 chr2R 14565547 intron ttv + chr2R 14565614 intron ttv + chr2R 14565682 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-377 1216 chr2R 14566441 14566474 chr2R 14566548 14566581 7 105 17.0 12.0 14.5 0.5 140 chr2R 14566441 intron ttv + chr2R 14566511 intron ttv + chr2R 14566581 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-377 1217 chr2R 14653914 14653926 chr2R 14654022 14654046 5 116 8.0 11.0 9.5 0.5 132 chr2R 14653914 intergenic not near genes chr2R 14653980 intergenic not near genes chr2R 14654046 intergenic not near genes chr2R_5_14650001 chr2R_14650001 RAL-377 1218 chr2R 14680301 14680325 chr2R 14680429 14680466 4 137 7.0 6.0 6.5 0.5 165 chr2R 14680301 intron mspo - chr2R 14680384 intron mspo - chr2R 14680466 intron mspo - chr2R_4_14680001 chr2R_14680001 RAL-377 1219 chr2R 14715694 14715725 chr2R 14715791 14715822 5 97 12.5 12.5 12.5 0.4 128 chr2R 14715694 intergenic not near genes chr2R 14715758 intergenic not near genes chr2R 14715822 intergenic not near genes chr2R_5_14715001 chr2R_14715001 RAL-377 1220 chr2R 14786020 14786063 chr2R 14786133 14786176 5 113 9.0 15.0 12.0 0.4 156 chr2R 14786020 intron kn - chr2R 14786098 intron kn - chr2R 14786176 intron kn - chr2R_5_14785001 chr2R_14785001 RAL-377 1221 chr2R 14799871 14799891 chr2R 14799967 14799987 4 96 11.5 15.0 13.2 0.3 116 chr2R 14799871 intron kn - chr2R 14799929 intron kn - chr2R 14799987 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-377 1222 chr2R 14820895 14820930 chr2R 14820985 14821037 7 104 12.0 12.5 12.2 0.5 142 chr2R 14820895 intergenic not near genes chr2R 14820966 intergenic not near genes chr2R 14821037 intergenic not near genes chr2R_7_14820001 chr2R_14820001 RAL-377 1223 chr2R 14822807 14822834 chr2R 14823085 14823112 7 274 14.5 15.0 14.8 0.4 305 chr2R 14822807 intergenic not near genes chr2R 14822960 intergenic not near genes chr2R 14823112 intergenic CR45329 - chr2R_7_14820001 chr2R_14820001 RAL-377 1224 chr2R 14826381 14826393 chr2R 14826503 14826516 6 124 6.5 0.0 3.2 1.4 135 chr2R 14826381 intergenic not near genes chr2R 14826448 intergenic not near genes chr2R 14826516 intergenic not near genes chr2R_6_14825001 chr2R_14825001 RAL-377 1225 chr2R 14842372 14842393 chr2R 14842488 14842509 7 116 12.0 11.5 11.8 0.5 137 chr2R 14842372 intergenic NaPi-T - chr2R 14842440 intergenic NaPi-T - chr2R 14842509 intergenic NaPi-T - chr2R_7_14840001 chr2R_14840001 RAL-377 1226 chr2R 14855016 14855045 chr2R 14855127 14855156 5 112 15.0 11.0 13.0 0.4 140 chr2R 14855016 5` UTR Ciao1 - chr2R 14855086 intergenic Ciao1 -,HPS1 + chr2R 14855156 intergenic Ciao1 -,HPS1 + chr2R_5_14855001 chr2R_14855001 RAL-377 1227 chr2R 14873671 14873720 chr2R 14875209 14875252 16 1536 5.5 0.0 2.8 4.2 1581 chr2R 14873671 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874462 exon Cyp6a17 + chr2R 14875252 exon Cyp6a17 + chr2R_16_14870001 chr2R_14870001 RAL-377 1228 chr2R 14875234 14875261 chr2R 14875656 14875693 10 429 0.0 4.0 2.0 3.3 459 chr2R 14875234 exon Cyp6a17 + chr2R 14875464 exon Cyp6a17 + chr2R 14875693 3` UTR Cyp6a17 + chr2R_10_14875001 chr2R_14875001 RAL-377 1229 chr2R 14889199 14889210 chr2R 14897827 14897838 Max-element 5 8628 15.0 0.5 7.8 0.6 8639 chr2R 14889199 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-377 1230 chr2R 14911688 14911725 chr2R 14911831 14911868 10 143 5.5 7.5 6.5 1.3 180 chr2R 14911688 intron CG10249 - chr2R 14911778 intron CG10249 - chr2R 14911868 intron CG10249 - chr2R_10_14910001 chr2R_14910001 RAL-377 1231 chr2R 14919135 14919174 chr2R 14919264 14919303 5 129 1.0 0.0 0.5 3.3 168 chr2R 14919135 intron CG10249 - chr2R 14919219 intron CG10249 - chr2R 14919303 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-377 1232 chr2R 14922141 14922170 chr2R 14922237 14922266 7 94 16.0 15.0 15.5 0.4 125 chr2R 14922141 intron CG10249 - chr2R 14922204 intron CG10249 - chr2R 14922266 intron CG10249 - chr2R_7_14920001 chr2R_14920001 RAL-377 1233 chr2R 14955650 14955680 chr2R 14955759 14955789 10 109 15.0 6.5 10.8 0.8 139 chr2R 14955650 intron aPKC - chr2R 14955720 intron aPKC - chr2R 14955789 intron aPKC - chr2R_10_14955001 chr2R_14955001 RAL-377 1234 chr2R 14957721 14957760 chr2R 14958191 14958230 9 469 3.0 12.0 7.5 1.1 509 chr2R 14957721 intron aPKC - chr2R 14957976 intron aPKC - chr2R 14958230 intron aPKC - chr2R_9_14955001 chr2R_14955001 RAL-377 1235 chr2R 14968045 14968085 chr2R 14968144 14968184 10 99 4.0 2.0 3.0 2.5 139 chr2R 14968045 intron ckn + chr2R 14968114 intron ckn + chr2R 14968184 intron ckn + chr2R_10_14965001 chr2R_14965001 RAL-377 1236 chr2R 15001589 15001612 chr2R 15001704 15001727 4 115 8.5 9.5 9.0 0.4 138 chr2R 15001589 intergenic not near genes chr2R 15001658 intergenic not near genes chr2R 15001727 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-377 1237 chr2R 15004738 15004750 chr2R 15005092 15005104 jockey 5 354 7.0 0.0 3.5 1.1 366 chr2R 15004738 intergenic not near genes chr2R 15004921 intergenic not near genes chr2R 15005104 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-377 1238 chr2R 15015445 15015485 chr2R 15022883 15022925 mdg1 12 7441 2.0 2.0 2.0 4.0 7480 chr2R 15015445 intron hbs + chr2R 15019185 intron hbs + chr2R 15022925 intron hbs + chr2R_12_15015001 chr2R_15015001 RAL-377 1239 chr2R 15026289 15026337 chr2R 15026387 15026427 7 97 13.5 11.5 12.5 0.5 138 chr2R 15026289 intron hbs + chr2R 15026358 intron hbs + chr2R 15026427 intron hbs + chr2R_7_15025001 chr2R_15025001 RAL-377 1240 chr2R 15073106 15073132 chr2R 15073209 15073235 4 103 17.0 19.5 18.2 0.2 129 chr2R 15073106 intergenic not near genes chr2R 15073170 intergenic not near genes chr2R 15073235 intergenic not near genes chr2R_4_15070001 chr2R_15070001 RAL-377 1241 chr2R 15084957 15084999 chr2R 15092026 15092068 297 11 7069 2.5 4.5 3.5 2.4 7111 chr2R 15084957 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092068 5` UTR CR44457 + chr2R_11_15085001 chr2R_15085001 RAL-377 1242 chr2R 15119305 15119340 chr2R 15127800 15127841 Tirant 5 8496 5.5 2.5 4.0 1.0 8536 chr2R 15119305 intron chn + chr2R 15123573 intron chn + chr2R 15127841 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-377 1243 chr2R 15133461 15133494 chr2R 15133560 15133592 12 98 10.0 7.5 8.8 1.2 131 chr2R 15133461 intron chn + chr2R 15133526 intron chn + chr2R 15133592 intron chn + chr2R_12_15130001 chr2R_15130001 RAL-377 1244 chr2R 15137960 15138004 chr2R 15138060 15138077 4 94 11.5 9.0 10.2 0.4 117 chr2R 15137960 intron chn + chr2R 15138018 intron chn + chr2R 15138077 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-377 1245 chr2R 15164182 15164230 chr2R 15164305 15164353 6 119 9.0 11.5 10.2 0.5 171 chr2R 15164182 intron igl + chr2R 15164268 intron igl + chr2R 15164353 intron igl + chr2R_6_15160001 chr2R_15160001 RAL-377 1246 chr2R 15183018 15183065 chr2R 15183129 15183176 14 109 9.0 14.0 11.5 1.1 158 chr2R 15183018 intron igl + chr2R 15183097 intron igl + chr2R 15183176 intron igl + chr2R_14_15180001 chr2R_15180001 RAL-377 1247 chr2R 15301873 15301897 chr2R 15301971 15301995 4 98 11.0 14.0 12.5 0.3 122 chr2R 15301873 intron Trpm - chr2R 15301934 intron Trpm - chr2R 15301995 intron Trpm - chr2R_4_15300001 chr2R_15300001 RAL-377 1248 chr2R 15338229 15338252 chr2R 15338328 15338351 5 99 11.0 9.0 10.0 0.5 122 chr2R 15338229 intron Hr51 + chr2R 15338290 intron Hr51 + chr2R 15338351 intron Hr51 + chr2R_5_15335001 chr2R_15335001 RAL-377 1249 chr2R 15390392 15390421 chr2R 15390506 15390530 7 110 0.0 4.5 2.2 2.2 138 chr2R 15390392 intergenic not near genes chr2R 15390461 intergenic not near genes chr2R 15390530 intergenic not near genes chr2R_7_15390001 chr2R_15390001 RAL-377 1250 chr2R 15402585 15402613 chr2R 15402718 15402746 7 133 3.5 5.0 4.2 1.3 161 chr2R 15402585 intron CG43729 + chr2R 15402666 intron CG43729 + chr2R 15402746 intron CG43729 + chr2R_7_15400001 chr2R_15400001 RAL-377 1251 chr2R 15537691 15537742 chr2R 15537793 15537844 18 102 2.5 4.5 3.5 4.0 153 chr2R 15537691 3` UTR CG30471 + chr2R 15537768 3` UTR CG30471 + chr2R 15537844 intergenic CG30471 +,CG30467 + chr2R_18_15535001 chr2R_15535001 RAL-377 1252 chr2R 15585729 15585768 chr2R 15585833 15585872 15 104 5.0 3.0 4.0 3.0 143 chr2R 15585729 intergenic not near genes chr2R 15585800 intergenic not near genes chr2R 15585872 intergenic not near genes chr2R_15_15585001 chr2R_15585001 RAL-377 1253 chr2R 15606071 15606106 chr2R 15606168 15606203 13 97 5.5 4.5 5.0 2.2 132 chr2R 15606071 intergenic not near genes chr2R 15606137 intergenic not near genes chr2R 15606203 intergenic not near genes chr2R_13_15605001 chr2R_15605001 RAL-377 1254 chr2R 15655961 15656010 chr2R 15656061 15656110 20 99 3.5 4.5 4.0 4.0 149 chr2R 15655961 intron CG42524 + chr2R 15656036 intron CG42524 + chr2R 15656110 intron CG42524 + chr2R_20_15655001 chr2R_15655001 RAL-377 1255 chr2R 15675096 15675098 chr2R 15675193 15675195 4 97 13.5 6.0 9.8 0.4 99 chr2R 15675096 intron fus - chr2R 15675146 intron fus - chr2R 15675195 intron fus - chr2R_4_15675001 chr2R_15675001 RAL-377 1256 chr2R 15675099 15675143 chr2R 15675191 15675240 23 96 4.0 5.5 4.8 4.0 141 chr2R 15675099 intron fus - chr2R 15675170 intron fus - chr2R 15675240 intron fus - chr2R_23_15675001 chr2R_15675001 RAL-377 1257 chr2R 15700234 15700274 chr2R 15700349 15700388 11 113 5.0 2.5 3.8 2.3 154 chr2R 15700234 intron,5` UTR CG30080 -,CG42662 - chr2R 15700311 intron,5` UTR CG30080 -,CG42662 - chr2R 15700388 intron,5` UTR CG30080 -,CG42662 - chr2R_11_15700001 chr2R_15700001 RAL-377 1258 chr2R 15810359 15810406 chr2R 15810458 15810505 13 98 3.0 3.5 3.2 3.1 146 chr2R 15810359 intron,intron Zasp52 -,tun + chr2R 15810432 intron,intron Zasp52 -,tun + chr2R 15810505 intron,intron Zasp52 -,tun + chr2R_13_15810001 chr2R_15810001 RAL-377 1259 chr2R 15816391 15816429 chr2R 15816526 15816558 5 131 17.0 12.0 14.5 0.3 167 chr2R 15816391 intron,intron Zasp52 -,tun + chr2R 15816474 intron,intron Zasp52 -,tun + chr2R 15816558 intron,intron Zasp52 -,tun + chr2R_5_15815001 chr2R_15815001 RAL-377 1260 chr2R 15847591 15847632 chr2R 15847688 15847729 6 96 11.5 13.0 12.2 0.5 138 chr2R 15847591 intron tun + chr2R 15847660 intron tun + chr2R 15847729 intron tun + chr2R_6_15845001 chr2R_15845001 RAL-377 1261 chr2R 15861219 15861265 chr2R 15861316 15861360 5 96 18.5 18.0 18.2 0.3 141 chr2R 15861219 intron Gpo-1 - chr2R 15861290 intron Gpo-1 - chr2R 15861360 intron Gpo-1 - chr2R_5_15860001 chr2R_15860001 RAL-377 1262 chr2R 15873835 15873860 chr2R 15873949 15873974 6 110 9.0 11.0 10.0 0.5 139 chr2R 15873835 intron sli - chr2R 15873904 intron sli - chr2R 15873974 intron sli - chr2R_6_15870001 chr2R_15870001 RAL-377 1263 chr2R 15877952 15877978 chr2R 15878057 15878083 5 105 21.0 14.0 17.5 0.3 131 chr2R 15877952 intron sli - chr2R 15878018 intron sli - chr2R 15878083 intron sli - chr2R_5_15875001 chr2R_15875001 RAL-377 1264 chr2R 15911221 15911272 chr2R 15911471 15911522 6 250 10.0 11.0 10.5 0.5 301 chr2R 15911221 intron sli - chr2R 15911372 intron sli - chr2R 15911522 intron sli - chr2R_6_15910001 chr2R_15910001 RAL-377 1265 chr2R 15998997 15999047 chr2R 15999097 15999139 13 97 3.5 4.0 3.8 2.7 142 chr2R 15998997 intron ATPCL - chr2R 15999068 intron ATPCL - chr2R 15999139 intron ATPCL - chr2R_13_15995001 chr2R_15995001 RAL-377 1266 chr2R 16013544 16013579 chr2R 16013633 16013675 6 94 10.5 10.5 10.5 0.5 131 chr2R 16013544 3` UTR CG8389 + chr2R 16013610 3` UTR CG8389 + chr2R 16013675 3` UTR CG8389 + chr2R_6_16010001 chr2R_16010001 RAL-377 1267 chr2R 16075398 16075410 chr2R 16075496 16075508 9 98 5.5 9.0 7.2 1.1 110 chr2R 16075398 intergenic not near genes chr2R 16075453 intergenic not near genes chr2R 16075508 intergenic not near genes chr2R_9_16075001 chr2R_16075001 RAL-377 1268 chr2R 16303495 16303534 chr2R 16303591 16303630 5 89 6.0 8.5 7.2 0.6 135 chr2R 16303495 3` UTR CR45232 - chr2R 16303562 3` UTR CR45232 - chr2R 16303630 3` UTR CR45232 - chr2R_5_16300001 chr2R_16300001 RAL-377 1269 chr2R 16352006 16352033 chr2R 16352174 16352201 7 168 12.0 10.0 11.0 0.6 195 chr2R 16352006 intergenic not near genes chr2R 16352104 intergenic not near genes chr2R 16352201 intergenic not near genes chr2R_7_16350001 chr2R_16350001 RAL-377 1270 chr2R 16442870 16442915 chr2R 16442971 16443016 13 101 2.5 3.5 3.0 3.2 146 chr2R 16442870 intergenic CG4409 + chr2R 16442943 intergenic CG4409 + chr2R 16443016 intergenic CG4409 + chr2R_13_16440001 chr2R_16440001 RAL-377 1271 chr2R 16489155 16489160 chr2R 16489251 16489256 5 96 4.5 2.0 3.2 1.2 101 chr2R 16489155 3` UTR CG33459 + chr2R 16489206 intergenic CG33459 + chr2R 16489256 intergenic CG33459 + chr2R_5_16485001 chr2R_16485001 RAL-377 1272 chr2R 16539622 16539634 chr2R 16544844 16544860 copia 6 5224 3.5 0.0 1.8 2.1 5238 chr2R 16539622 intergenic not near genes chr2R 16542241 intergenic not near genes chr2R 16544860 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-377 1273 chr2R 16544844 16544869 chr2R 16544949 16544974 11 105 0.0 0.0 0.0 11.0 130 chr2R 16544844 intergenic not near genes chr2R 16544909 intergenic not near genes chr2R 16544974 intergenic not near genes chr2R_11_16540001 chr2R_16540001 RAL-377 1274 chr2R 16562369 16562407 chr2R 16562934 16562972 6 565 13.0 4.5 8.8 0.6 603 chr2R 16562369 intron DAT - chr2R 16562670 intron DAT - chr2R 16562972 intron DAT - chr2R_6_16560001 chr2R_16560001 RAL-377 1275 chr2R 16596916 16596962 chr2R 16597018 16597064 17 134 2.5 1.0 1.8 6.1 148 chr2R 16596916 exon CG8303 - chr2R 16596990 intron CG8303 - chr2R 16597064 intron CG8303 - chr2R_17_16595001 chr2R_16595001 RAL-377 1276 chr2R 16668171 16668219 chr2R 16668269 16668317 6 98 10.0 11.0 10.5 0.5 146 chr2R 16668171 intergenic Picot - chr2R 16668244 intergenic not near genes chr2R 16668317 intergenic not near genes chr2R_6_16665001 chr2R_16665001 RAL-377 1277 chr2R 16672776 16672824 chr2R 16672868 16672924 10 99 10.0 9.5 9.8 0.9 148 chr2R 16672776 exon CG34458 + chr2R 16672850 3` UTR CG34458 + chr2R 16672924 intergenic CG34458 +,CG30463 - chr2R_10_16670001 chr2R_16670001 RAL-377 1278 chr2R 16714456 16714499 chr2R 16714578 16714621 12 122 2.0 2.5 2.2 3.8 165 chr2R 16714456 intron CG30463 - chr2R 16714538 intron CG30463 - chr2R 16714621 intron CG30463 - chr2R_12_16710001 chr2R_16710001 RAL-377 1279 chr2R 16726568 16726680 chr2R 16726667 16726799 5 110 1.0 5.0 3.0 1.2 231 chr2R 16726568 intron CG30463 - chr2R 16726684 intron CG30463 - chr2R 16726799 intron CG30463 - chr2R_5_16725001 chr2R_16725001 RAL-377 1280 chr2R 16727926 16727971 chr2R 16728022 16728067 5 96 11.0 11.5 11.2 0.4 141 chr2R 16727926 intron CG30463 - chr2R 16727996 intron CG30463 - chr2R 16728067 intron CG30463 - chr2R_5_16725001 chr2R_16725001 RAL-377 1281 chr2R 16775626 16775673 chr2R 16775910 16775940 18 283 2.5 5.0 3.8 3.8 314 chr2R 16775626 3` UTR Arp53D + chr2R 16775783 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_18_16775001 chr2R_16775001 RAL-377 1282 chr2R 16784438 16784484 chr2R 16784546 16784592 14 108 9.5 8.5 9.0 1.4 154 chr2R 16784438 intron CG5522 + chr2R 16784515 intron CG5522 + chr2R 16784592 intron CG5522 + chr2R_14_16780001 chr2R_16780001 RAL-377 1283 chr2R 16787100 16787143 chr2R 16787187 16787241 9 96 9.0 9.5 9.2 0.9 141 chr2R 16787100 intron CG5522 + chr2R 16787170 intron CG5522 + chr2R 16787241 intron CG5522 + chr2R_9_16785001 chr2R_16785001 RAL-377 1284 chr2R 16799016 16799050 chr2R 16799116 16799150 11 100 1.5 2.0 1.8 3.9 134 chr2R 16799016 intergenic not near genes chr2R 16799083 intergenic not near genes chr2R 16799150 intergenic not near genes chr2R_11_16795001 chr2R_16795001 RAL-377 1285 chr2R 16904772 16904797 chr2R 16905000 16905025 9 228 5.0 11.5 8.2 1.0 253 chr2R 16904772 intergenic not near genes chr2R 16904898 intergenic not near genes chr2R 16905025 intergenic not near genes chr2R_9_16900001 chr2R_16900001 RAL-377 1286 chr2R 16904801 16904817 chr2R 16904917 16904930 4 140 3.0 2.5 2.8 1.1 129 chr2R 16904801 intergenic not near genes chr2R 16904866 intergenic not near genes chr2R 16904930 intergenic not near genes chr2R_4_16900001 chr2R_16900001 RAL-377 1287 chr2R 16910956 16910997 chr2R 16911178 16911220 6 222 12.0 9.5 10.8 0.5 264 chr2R 16910956 intergenic not near genes chr2R 16911088 intergenic not near genes chr2R 16911220 intergenic not near genes chr2R_6_16910001 chr2R_16910001 RAL-377 1288 chr2R 16912687 16912719 chr2R 16912848 16912880 13 161 5.0 9.0 7.0 1.6 193 chr2R 16912687 intergenic not near genes chr2R 16912784 intergenic not near genes chr2R 16912880 intergenic not near genes chr2R_13_16910001 chr2R_16910001 RAL-377 1289 chr2R 16933482 16933511 chr2R 16933580 16933609 9 98 4.5 0.0 2.2 2.8 127 chr2R 16933482 intron Pkc53E + chr2R 16933546 intron Pkc53E + chr2R 16933609 intron Pkc53E + chr2R_9_16930001 chr2R_16930001 RAL-377 1290 chr2R 16940432 16940469 chr2R 16940534 16940571 10 101 5.0 3.5 4.2 1.9 139 chr2R 16940432 intron Pkc53E + chr2R 16940502 intron Pkc53E + chr2R 16940571 intron Pkc53E + chr2R_10_16940001 chr2R_16940001 RAL-377 1291 chr2R 16978458 16978501 chr2R 16978563 16978607 12 107 2.0 2.5 2.2 3.8 149 chr2R 16978458 intron Cbp53E + chr2R 16978532 intron Cbp53E + chr2R 16978607 intron Cbp53E + chr2R_12_16975001 chr2R_16975001 RAL-377 1292 chr2R 16987025 16987070 chr2R 16987166 16987211 9 141 16.5 13.5 15.0 0.6 186 chr2R 16987025 intron Cbp53E + chr2R 16987118 intron Cbp53E + chr2R 16987211 intron Cbp53E + chr2R_9_16985001 chr2R_16985001 RAL-377 1293 chr2R 17048600 17048647 chr2R 17048699 17048746 16 99 6.5 7.5 7.0 2.0 146 chr2R 17048600 3` UTR CG9642 + chr2R 17048673 3` UTR CG9642 + chr2R 17048746 3` UTR CG9642 + chr2R_16_17045001 chr2R_17045001 RAL-377 1294 chr2R 17074883 17074922 chr2R 17074998 17075037 9 115 2.0 9.0 5.5 1.4 154 chr2R 17074883 intron CG30460 - chr2R 17074960 intron CG30460 - chr2R 17075037 intron CG30460 - chr2R_9_17070001 chr2R_17070001 RAL-377 1295 chr2R 17092537 17092559 chr2R 17092681 17092687 5 141 10.5 13.5 12.0 0.4 150 chr2R 17092537 intron CG6984 + chr2R 17092612 exon CG6984 + chr2R 17092687 exon CG6984 + chr2R_5_17090001 chr2R_17090001 RAL-377 1296 chr2R 17132845 17132863 chr2R 17132964 17132982 10 119 7.5 2.0 4.8 1.7 137 chr2R 17132845 intergenic not near genes chr2R 17132914 intergenic not near genes chr2R 17132982 intergenic Acp54A1 + chr2R_10_17130001 chr2R_17130001 RAL-377 1297 chr2R 17147224 17147263 chr2R 17152275 17152314 jockey 10 5051 5.5 7.5 6.5 1.3 5090 chr2R 17147224 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152314 intergenic not near genes chr2R_10_17145001 chr2R_17145001 RAL-377 1298 chr2R 17214650 17214688 chr2R 17214758 17214808 16 118 2.5 4.5 3.5 3.6 158 chr2R 17214650 intergenic not near genes chr2R 17214729 intergenic not near genes chr2R 17214808 intergenic not near genes chr2R_16_17210001 chr2R_17210001 RAL-377 1299 chr2R 17221887 17221930 chr2R 17222099 17222142 18 210 7.5 5.0 6.2 2.5 255 chr2R 17221887 intron mbl + chr2R 17222014 intron mbl + chr2R 17222142 intron mbl + chr2R_18_17220001 chr2R_17220001 RAL-377 1300 chr2R 17227571 17227608 chr2R 17227724 17227761 13 153 4.5 7.0 5.8 1.9 190 chr2R 17227571 intron mbl + chr2R 17227666 intron mbl + chr2R 17227761 intron mbl + chr2R_13_17225001 chr2R_17225001 RAL-377 1301 chr2R 17232770 17232820 chr2R 17232878 17232897 8 98 3.0 0.5 1.8 2.9 127 chr2R 17232770 intron mbl + chr2R 17232834 intron mbl + chr2R 17232897 intron mbl + chr2R_8_17230001 chr2R_17230001 RAL-377 1302 chr2R 17236500 17236540 chr2R 17241724 17241764 copia 11 5224 4.5 5.5 5.0 1.8 5264 chr2R 17236500 intron mbl + chr2R 17239132 intron mbl + chr2R 17241764 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-377 1303 chr2R 17263276 17263284 chr2R 17263376 17263384 4 100 9.0 10.5 9.8 0.4 108 chr2R 17263276 intron mbl + chr2R 17263330 intron mbl + chr2R 17263384 intron mbl + chr2R_4_17260001 chr2R_17260001 RAL-377 1304 chr2R 17296740 17296774 chr2R 17296826 17296870 4 94 0.5 0.0 0.2 3.3 130 chr2R 17296740 intron mbl + chr2R 17296805 intron mbl + chr2R 17296870 intron mbl + chr2R_4_17295001 chr2R_17295001 RAL-377 1305 chr2R 17335704 17335734 chr2R 17335808 17335858 6 120 14.0 15.0 14.5 0.4 154 chr2R 17335704 intron mbl + chr2R 17335781 intron mbl + chr2R 17335858 intron mbl + chr2R_6_17335001 chr2R_17335001 RAL-377 1306 chr2R 17351686 17351737 chr2R 17351791 17351842 14 104 9.5 12.5 11.0 1.2 156 chr2R 17351686 intron mbl + chr2R 17351764 intron mbl + chr2R 17351842 intron mbl + chr2R_14_17350001 chr2R_17350001 RAL-377 1307 chr2R 17381570 17381608 chr2R 17381673 17381716 6 103 12.5 11.5 12.0 0.5 146 chr2R 17381570 intergenic not near genes chr2R 17381643 intergenic not near genes chr2R 17381716 intergenic not near genes chr2R_6_17380001 chr2R_17380001 RAL-377 1308 chr2R 17384503 17384539 chr2R 17384607 17384643 11 104 10.5 13.5 12.0 0.8 140 chr2R 17384503 intergenic not near genes chr2R 17384573 intergenic not near genes chr2R 17384643 intergenic not near genes chr2R_11_17380001 chr2R_17380001 RAL-377 1309 chr2R 17395268 17395272 chr2R 17395366 17395370 4 98 10.5 6.0 8.2 0.4 102 chr2R 17395268 intron Sip1 + chr2R 17395319 intron Sip1 + chr2R 17395370 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-377 1310 chr2R 17395274 17395315 chr2R 17395364 17395411 13 96 4.5 5.5 5.0 2.2 137 chr2R 17395274 intron Sip1 + chr2R 17395342 intron Sip1 + chr2R 17395411 intron Sip1 + chr2R_13_17395001 chr2R_17395001 RAL-377 1311 chr2R 17419914 17419960 chr2R 17420015 17420058 5 99 7.5 9.0 8.2 0.5 144 chr2R 17419914 5` UTR cnk - chr2R 17419986 5` UTR cnk - chr2R 17420058 intergenic cnk -,l(2)k01209 + chr2R_5_17415001 chr2R_17415001 RAL-377 1312 chr2R 17485302 17485336 chr2R 17485424 17485458 4 122 7.5 12.5 10.0 0.4 156 chr2R 17485302 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17485380 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17485458 5` UTR,intron CG43110 -,NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-377 1313 chr2R 17485894 17485950 chr2R 17490676 17490730 F-element 9 4780 7.0 2.0 4.5 1.6 4836 chr2R 17485894 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490730 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-377 1314 chr2R 17500636 17500690 chr2R 17500732 17500786 5 96 3.0 3.5 3.2 1.2 150 chr2R 17500636 intergenic not near genes chr2R 17500711 intergenic not near genes chr2R 17500786 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-377 1315 chr2R 17556419 17556457 chr2R 17556525 17556562 7 105 14.5 12.0 13.2 0.5 143 chr2R 17556419 intergenic MESR4 + chr2R 17556490 intergenic MESR4 + chr2R 17556562 intergenic MESR4 +,Klp54D + chr2R_7_17555001 chr2R_17555001 RAL-377 1316 chr2R 17697168 17697196 chr2R 17697256 17697293 8 96 3.0 2.0 2.5 2.3 125 chr2R 17697168 intron rdgBbeta - chr2R 17697230 intron rdgBbeta - chr2R 17697293 intron rdgBbeta - chr2R_8_17695001 chr2R_17695001 RAL-377 1317 chr2R 17699404 17699422 chr2R 17700346 17700365 4 943 17.5 6.5 12.0 0.3 961 chr2R 17699404 5` UTR Uhg1 + chr2R 17699884 5` UTR Uhg1 + chr2R 17700365 intron Uhg1 + chr2R_4_17695001 chr2R_17695001 RAL-377 1318 chr2R 17699191 17699227 chr2R 17700579 17700615 17 1389 23.5 27.5 25.5 0.6 1424 chr2R 17699191 intron Uhg1 + chr2R 17699903 intron Uhg1 + chr2R 17700615 intron Uhg1 + chr2R_17_17695001 chr2R_17695001 RAL-377 1319 chr2R 17708222 17708258 chr2R 17708425 17708461 10 203 1.5 3.5 2.5 2.9 239 chr2R 17708222 intron CG6424 - chr2R 17708342 intron CG6424 - chr2R 17708461 intron CG6424 - chr2R_10_17705001 chr2R_17705001 RAL-377 1320 chr2R 17709965 17710010 chr2R 17710076 17710115 7 110 4.5 4.0 4.2 1.3 150 chr2R 17709965 intron CG6424 - chr2R 17710040 intron CG6424 - chr2R 17710115 intron CG6424 - chr2R_7_17710001 chr2R_17710001 RAL-377 1321 chr2R 17722160 17722207 chr2R 17722264 17722311 10 104 13.5 16.5 15.0 0.6 151 chr2R 17722160 intergenic CG10934 + chr2R 17722236 intergenic CG10934 + chr2R 17722311 intergenic CG10934 + chr2R_10_17720001 chr2R_17720001 RAL-377 1322 chr2R 17782350 17782390 chr2R 17783573 17783613 pogo 11 1222 6.5 7.0 6.8 1.4 1263 chr2R 17782350 intergenic CG33981 -,fab1 - chr2R 17782982 intergenic not near genes chr2R 17783613 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-377 1323 chr2R 17784022 17784050 chr2R 17784281 17784299 pogo 7 258 3.0 5.0 4.0 1.4 277 chr2R 17784022 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784299 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-377 1324 chr2R 17821717 17821743 chr2R 17821819 17821846 9 103 2.5 3.5 3.0 2.2 129 chr2R 17821717 intron grh + chr2R 17821782 intron grh + chr2R 17821846 intron grh + chr2R_9_17820001 chr2R_17820001 RAL-377 1325 chr2R 17907995 17908048 chr2R 17908091 17908144 7 96 5.5 4.5 5.0 1.2 149 chr2R 17907995 intron Elk + chr2R 17908070 intron Elk + chr2R 17908144 intron Elk + chr2R_7_17905001 chr2R_17905001 RAL-377 1326 chr2R 17982905 17982949 chr2R 17983010 17983054 6 104 11.5 10.0 10.8 0.5 149 chr2R 17982905 intron dpr13 - chr2R 17982980 intron dpr13 - chr2R 17983054 intron dpr13 - chr2R_6_17980001 chr2R_17980001 RAL-377 1327 chr2R 17995124 17995169 chr2R 17995265 17995310 8 140 6.0 1.5 3.8 1.7 186 chr2R 17995124 intron dpr13 - chr2R 17995217 intron dpr13 - chr2R 17995310 intron dpr13 - chr2R_8_17995001 chr2R_17995001 RAL-377 1328 chr2R 17997158 17997194 chr2R 17997241 17997296 10 94 3.5 1.5 2.5 2.9 138 chr2R 17997158 intron dpr13 - chr2R 17997227 intron dpr13 - chr2R 17997296 intron dpr13 - chr2R_10_17995001 chr2R_17995001 RAL-377 1329 chr2R 18031664 18031704 chr2R 18031776 18031816 8 110 0.5 0.5 0.5 5.3 152 chr2R 18031664 intergenic not near genes chr2R 18031740 intergenic not near genes chr2R 18031816 intergenic not near genes chr2R_8_18030001 chr2R_18030001 RAL-377 1330 chr2R 18038073 18038102 chr2R 18038617 18038646 5 543 8.0 9.5 8.8 0.5 573 chr2R 18038073 intergenic not near genes chr2R 18038360 intergenic not near genes chr2R 18038646 intergenic not near genes chr2R_5_18035001 chr2R_18035001 RAL-377 1331 chr2R 18044166 18044204 chr2R 18044306 18044347 8 141 10.5 3.0 6.8 1.0 181 chr2R 18044166 3` UTR CG5770 - chr2R 18044256 3` UTR CG5770 - chr2R 18044347 exon CG5770 - chr2R_8_18040001 chr2R_18040001 RAL-377 1332 chr2R 18045651 18045702 chr2R 18046023 18046074 jockey 19 372 3.5 4.5 4.0 3.8 423 chr2R 18045651 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046074 intergenic CG5767 - chr2R_19_18045001 chr2R_18045001 RAL-377 1333 chr2R 18074582 18074623 chr2R 18074678 18074719 11 96 1.0 6.0 3.5 2.4 137 chr2R 18074582 intron CG34386 + chr2R 18074650 intron CG34386 + chr2R 18074719 intron CG34386 + chr2R_11_18070001 chr2R_18070001 RAL-377 1334 chr2R 18111684 18111711 chr2R 18115572 18115594 F-element 10 3888 2.5 0.0 1.2 4.5 3910 chr2R 18111684 intergenic not near genes chr2R 18113639 intergenic not near genes chr2R 18115594 intergenic not near genes chr2R_10_18110001 chr2R_18110001 RAL-377 1335 chr2R 18245462 18245653 chr2R 18245715 18245749 15 127 1.0 7.0 4.0 3.0 287 chr2R 18245462 intergenic not near genes chr2R 18245606 intergenic not near genes chr2R 18245749 intergenic CR44420 - chr2R_15_18245001 chr2R_18245001 RAL-377 1336 chr2R 18252180 18252204 chr2R 18252284 18252308 8 104 1.5 4.5 3.0 2.0 128 chr2R 18252180 intergenic not near genes chr2R 18252244 intergenic not near genes chr2R 18252308 intergenic not near genes chr2R_8_18250001 chr2R_18250001 RAL-377 1337 chr2R 18255675 18255723 chr2R 18255909 18255956 11 233 3.5 3.0 3.2 2.6 281 chr2R 18255675 intergenic not near genes chr2R 18255816 intergenic not near genes chr2R 18255956 intergenic not near genes chr2R_11_18255001 chr2R_18255001 RAL-377 1338 chr2R 18260181 18260206 chr2R 18260348 18260373 6 166 17.0 12.0 14.5 0.4 192 chr2R 18260181 intergenic not near genes chr2R 18260277 intergenic not near genes chr2R 18260373 intergenic not near genes chr2R_6_18260001 chr2R_18260001 RAL-377 1339 chr2R 18312347 18312394 chr2R 18312467 18312507 10 119 4.5 4.0 4.2 1.9 160 chr2R 18312347 intron sbb - chr2R 18312427 intron sbb - chr2R 18312507 intron sbb - chr2R_10_18310001 chr2R_18310001 RAL-377 1340 chr2R 18330469 18330506 chr2R 18330574 18330611 9 105 12.0 10.5 11.2 0.7 142 chr2R 18330469 intron sbb - chr2R 18330540 intron sbb - chr2R 18330611 intron sbb - chr2R_9_18330001 chr2R_18330001 RAL-377 1341 chr2R 18358382 18358422 chr2R 18372613 18372655 roo 11 14232 10.5 6.0 8.2 1.2 14273 chr2R 18358382 intergenic not near genes chr2R 18365518 intergenic not near genes chr2R 18372655 intergenic not near genes chr2R_11_18365001 chr2R_18365001 RAL-377 1342 chr2R 18376717 18376751 chr2R 18376835 18376869 12 114 4.0 4.5 4.2 2.3 152 chr2R 18376717 intergenic not near genes chr2R 18376793 intergenic not near genes chr2R 18376869 intergenic not near genes chr2R_12_18375001 chr2R_18375001 RAL-377 1343 chr2R 18387565 18387609 chr2R 18387666 18387710 14 100 2.0 4.5 3.2 3.3 145 chr2R 18387565 intergenic IM3 + chr2R 18387638 intergenic IM3 + chr2R 18387710 intergenic IM3 + chr2R_14_18385001 chr2R_18385001 RAL-377 1344 chr2R 18391200 18391234 chr2R 18395561 18395600 4 4362 20.5 18.5 19.5 0.2 4400 chr2R 18391200 intergenic not near genes chr2R 18393400 intergenic Idgf5 + chr2R 18395600 intergenic Idgf5 + chr2R_4_18390001 chr2R_18390001 RAL-377 1345 chr2R 18396077 18396103 chr2R 18396179 18396205 4 102 0.5 2.0 1.2 1.8 128 chr2R 18396077 intergenic not near genes chr2R 18396141 intergenic GstE10 - chr2R 18396205 intergenic GstE10 - chr2R_4_18395001 chr2R_18395001 RAL-377 1346 chr2R 18402480 18402526 chr2R 18402588 18402630 6 106 3.5 1.5 2.5 1.7 150 chr2R 18402480 intergenic not near genes chr2R 18402555 intergenic not near genes chr2R 18402630 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-377 1347 chr2R 18405734 18405783 chr2R 18405835 18405883 6 100 4.0 0.0 2.0 2.0 149 chr2R 18405734 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405883 intergenic GstE6 + chr2R_6_18405001 chr2R_18405001 RAL-377 1348 chr2R 18414016 18414044 chr2R 18414121 18414149 4 105 17.0 15.5 16.2 0.2 133 chr2R 18414016 intron Dp1 + chr2R 18414082 intron Dp1 + chr2R 18414149 intron Dp1 + chr2R_4_18410001 chr2R_18410001 RAL-377 1349 chr2R 18414634 18414677 chr2R 18414755 18414798 11 121 13.5 7.0 10.2 1.0 164 chr2R 18414634 intron Dp1 + chr2R 18414716 intron Dp1 + chr2R 18414798 intron Dp1 + chr2R_11_18410001 chr2R_18410001 RAL-377 1350 chr2R 18435817 18435860 chr2R 18435914 18435952 10 95 11.0 11.5 11.2 0.8 135 chr2R 18435817 intron CG30118 - chr2R 18435884 intron CG30118 - chr2R 18435952 intron CG30118 - chr2R_10_18435001 chr2R_18435001 RAL-377 1351 chr2R 18463681 18463688 chr2R 18463802 18463809 5 121 7.0 2.5 4.8 0.9 128 chr2R 18463681 intron CG30116 - chr2R 18463745 intron CG30116 - chr2R 18463809 intron CG30116 - chr2R_5_18460001 chr2R_18460001 RAL-377 1352 chr2R 18483010 18483055 chr2R 18483269 18483312 14 256 2.5 2.5 2.5 4.0 302 chr2R 18483010 intron CG30116 - chr2R 18483161 intron CG30116 - chr2R 18483312 intron CG30116 - chr2R_14_18480001 chr2R_18480001 RAL-377 1353 chr2R 18526576 18526624 chr2R 18526672 18526709 20 99 4.5 6.0 5.2 3.2 133 chr2R 18526576 intergenic CG43066 + chr2R 18526642 intergenic CG43066 + chr2R 18526709 intergenic CG43066 + chr2R_20_18525001 chr2R_18525001 RAL-377 1354 chr2R 18524102 18524147 chr2R 18526761 18526805 21 2659 40.5 24.0 32.2 0.6 2703 chr2R 18524102 intron CG43066 + chr2R 18525454 3` UTR CG43066 + chr2R 18526805 intergenic CG43066 + chr2R_21_18525001 chr2R_18525001 RAL-377 1355 chr2R 18552989 18553031 chr2R 18553089 18553131 4 100 15.0 15.5 15.2 0.2 142 chr2R 18552989 intergenic not near genes chr2R 18553060 intergenic not near genes chr2R 18553131 intergenic not near genes chr2R_4_18550001 chr2R_18550001 RAL-377 1356 chr2R 18575802 18575811 chr2R 18581987 18581997 3S18 5 6190 2.0 3.5 2.8 1.3 6195 chr2R 18575802 intron GEFmeso - chr2R 18578900 intron GEFmeso - chr2R 18581997 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-377 1357 chr2R 18575812 18575830 chr2R 18581985 18582038 3S18 6 6200 0.0 3.5 1.8 2.1 6226 chr2R 18575812 intron GEFmeso - chr2R 18578925 intron GEFmeso - chr2R 18582038 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-377 1358 chr2R 18590852 18590896 chr2R 18600024 18600068 roo 8 9170 1.5 2.5 2.0 2.7 9216 chr2R 18590852 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600068 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-377 1359 chr2R 18618977 18619022 chr2R 18619092 18619137 9 113 19.0 20.5 19.8 0.4 160 chr2R 18618977 intron CG5493 - chr2R 18619057 intron CG5493 - chr2R 18619137 intron CG5493 - chr2R_9_18615001 chr2R_18615001 RAL-377 1360 chr2R 18620397 18620426 chr2R 18620505 18620534 10 108 14.0 9.5 11.8 0.8 137 chr2R 18620397 intergenic Atg7 - chr2R 18620466 3` UTR Atg7 - chr2R 18620534 3` UTR Atg7 - chr2R_10_18620001 chr2R_18620001 RAL-377 1361 chr2R 18646415 18646433 chr2R 18646580 18646587 7 163 7.0 4.5 5.8 1.0 172 chr2R 18646415 intron SP2637 - chr2R 18646501 intron SP2637 - chr2R 18646587 intron SP2637 - chr2R_7_18645001 chr2R_18645001 RAL-377 1362 chr2R 18738187 18738240 chr2R 18738283 18738336 14 96 1.5 5.5 3.5 3.1 149 chr2R 18738187 intron Hs3st-A + chr2R 18738262 intron Hs3st-A + chr2R 18738336 intron Hs3st-A + chr2R_14_18735001 chr2R_18735001 RAL-377 1363 chr2R 18835871 18835897 chr2R 18835973 18835999 10 102 7.0 0.0 3.5 2.2 128 chr2R 18835871 intron CG15083 + chr2R 18835935 intron CG15083 + chr2R 18835999 intron CG15083 + chr2R_10_18835001 chr2R_18835001 RAL-377 1364 chr2R 18851671 18851703 chr2R 18852427 18852448 5 749 28.0 22.5 25.2 0.2 777 chr2R 18851671 exon CG15084 + chr2R 18852060 exon CG18190 - chr2R 18852448 exon CG18190 - chr2R_5_18850001 chr2R_18850001 RAL-377 1365 chr2R 18857390 18857400 chr2R 18857486 18857496 4 96 7.5 13.0 10.2 0.4 106 chr2R 18857390 exon Jheh2 - chr2R 18857443 intron Jheh2 - chr2R 18857496 intron Jheh2 - chr2R_4_18855001 chr2R_18855001 RAL-377 1366 chr2R 18862294 18862296 chr2R 18862401 18862403 4 107 0.0 0.0 0.0 4.0 109 chr2R 18862294 intergenic Jheh3 - chr2R 18862348 intergenic Jheh3 - chr2R 18862403 intergenic Jheh3 -,CG43069 + chr2R_4_18860001 chr2R_18860001 RAL-377 1367 chr2R 18862298 18862408 chr2R 18862398 18862513 7 114 0.0 0.0 0.0 7.0 215 chr2R 18862298 intergenic Jheh3 - chr2R 18862406 intergenic Jheh3 -,CG43069 + chr2R 18862513 intergenic CG43069 +,Jheh3 - chr2R_7_18860001 chr2R_18860001 RAL-377 1368 chr2R 18871629 18871665 chr2R 18871734 18871770 10 105 16.0 16.5 16.2 0.6 141 chr2R 18871629 intergenic not near genes chr2R 18871700 intergenic not near genes chr2R 18871770 intergenic not near genes chr2R_10_18870001 chr2R_18870001 RAL-377 1369 chr2R 18877369 18877424 chr2R 18877575 18877625 17 205 3.0 2.0 2.5 4.9 256 chr2R 18877369 intergenic not near genes chr2R 18877497 intergenic not near genes chr2R 18877625 intergenic not near genes chr2R_17_18875001 chr2R_18875001 RAL-377 1370 chr2R 18888190 18888232 chr2R 18888396 18888438 7 205 13.5 15.5 14.5 0.5 248 chr2R 18888190 intron sano + chr2R 18888314 intron sano + chr2R 18888438 intron sano + chr2R_7_18885001 chr2R_18885001 RAL-377 1371 chr2R 18924256 18924300 chr2R 18924359 18924400 7 98 2.0 1.0 1.5 2.8 144 chr2R 18924256 intron sano + chr2R 18924328 intron sano + chr2R 18924400 intron sano + chr2R_7_18920001 chr2R_18920001 RAL-377 1372 chr2R 18926485 18926528 chr2R 18926592 18926635 20 107 2.0 2.5 2.2 6.2 150 chr2R 18926485 intron sano + chr2R 18926560 intron sano + chr2R 18926635 intron sano + chr2R_20_18925001 chr2R_18925001 RAL-377 1373 chr2R 18954831 18954879 chr2R 18954934 18954978 8 103 9.5 8.5 9.0 0.8 147 chr2R 18954831 intron sano + chr2R 18954904 intron sano + chr2R 18954978 5` UTR sano + chr2R_8_18950001 chr2R_18950001 RAL-377 1374 chr2R 18988998 18989043 chr2R 18989096 18989141 23 98 2.5 6.5 4.5 4.2 143 chr2R 18988998 intron tn + chr2R 18989070 intron tn + chr2R 18989141 intron tn + chr2R_23_18985001 chr2R_18985001 RAL-377 1375 chr2R 19026032 19026060 chr2R 19026153 19026181 7 132 9.0 4.0 6.5 0.9 149 chr2R 19026032 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026181 intron 5-HT1B - chr2R_7_19025001 chr2R_19025001 RAL-377 1376 chr2R 19082855 19082882 chr2R 19083087 19083114 5 232 0.0 1.0 0.5 3.3 259 chr2R 19082855 intron 5-HT1A + chr2R 19082984 intron 5-HT1A + chr2R 19083114 intron 5-HT1A + chr2R_5_19080001 chr2R_19080001 RAL-377 1377 chr2R 19106972 19107022 chr2R 19107135 19107185 14 162 10.5 13.5 12.0 1.1 213 chr2R 19106972 intron 5-HT1A + chr2R 19107078 intron 5-HT1A + chr2R 19107185 intron 5-HT1A + chr2R_14_19105001 chr2R_19105001 RAL-377 1378 chr2R 19214199 19214240 chr2R 19214303 19214344 7 103 11.5 10.5 11.0 0.6 145 chr2R 19214199 intron hppy + chr2R 19214272 intron hppy + chr2R 19214344 intron hppy + chr2R_7_19210001 chr2R_19210001 RAL-377 1379 chr2R 19221698 19221736 chr2R 19221797 19221829 11 97 4.5 0.5 2.5 3.1 131 chr2R 19221698 intron hppy + chr2R 19221764 intron hppy + chr2R 19221829 intron hppy + chr2R_11_19220001 chr2R_19220001 RAL-377 1380 chr2R 19233114 19233159 chr2R 19233220 19233266 6 100 12.5 9.5 11.0 0.5 152 chr2R 19233114 intron cora + chr2R 19233190 intron cora + chr2R 19233266 intron cora + chr2R_6_19230001 chr2R_19230001 RAL-377 1381 chr2R 19247443 19247471 chr2R 19247573 19247609 8 131 1.5 0.0 0.8 4.4 166 chr2R 19247443 intergenic not near genes chr2R 19247526 intergenic not near genes chr2R 19247609 intergenic not near genes chr2R_8_19245001 chr2R_19245001 RAL-377 1382 chr2R 19251333 19251380 chr2R 19251450 19251496 10 116 15.0 16.0 15.5 0.6 163 chr2R 19251333 exon CG33454 - chr2R 19251414 exon CG33454 - chr2R 19251496 exon CG33454 - chr2R_10_19250001 chr2R_19250001 RAL-377 1383 chr2R 19253080 19253104 chr2R 19253190 19253213 7 110 17.0 18.5 17.8 0.4 133 chr2R 19253080 intron CG33453 - chr2R 19253146 exon CG33453 - chr2R 19253213 5` UTR CG33453 - chr2R_7_19250001 chr2R_19250001 RAL-377 1384 chr2R 19275956 19275984 chr2R 19276077 19276111 8 125 8.0 9.5 8.8 0.8 155 chr2R 19275956 intron rib + chr2R 19276034 intron rib + chr2R 19276111 intron rib + chr2R_8_19275001 chr2R_19275001 RAL-377 1385 chr2R 19295709 19295740 chr2R 19295809 19295841 6 101 3.5 9.5 6.5 0.8 132 chr2R 19295709 intron Tab2 + chr2R 19295775 intron Tab2 + chr2R 19295841 intron Tab2 + chr2R_6_19295001 chr2R_19295001 RAL-377 1386 chr2R 19359022 19359066 chr2R 19359120 19359169 17 103 4.0 0.5 2.2 5.3 147 chr2R 19359022 intron CG11961 + chr2R 19359096 intron CG11961 + chr2R 19359169 intron CG11961 + chr2R_17_19355001 chr2R_19355001 RAL-377 1387 chr2R 19418637 19418653 chr2R 19418945 19418948 4 305 10.5 10.5 10.5 0.3 311 chr2R 19418637 intron hts - chr2R 19418792 intron hts - chr2R 19418948 intron hts - chr2R_4_19415001 chr2R_19415001 RAL-377 1388 chr2R 19504332 19504381 chr2R 19504437 19504476 13 104 15.0 12.0 13.5 0.9 144 chr2R 19504332 3` UTR CG11007 + chr2R 19504404 3` UTR CG11007 + chr2R 19504476 3` UTR CG11007 + chr2R_13_19500001 chr2R_19500001 RAL-377 1389 chr2R 19535552 19535587 chr2R 19535656 19535690 6 103 11.0 14.0 12.5 0.4 138 chr2R 19535552 intron sm - chr2R 19535621 intron sm - chr2R 19535690 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-377 1390 chr2R 19570122 19570152 chr2R 19570230 19570260 4 106 7.5 8.0 7.8 0.5 138 chr2R 19570122 intron sm - chr2R 19570191 intron sm - chr2R 19570260 intron sm - chr2R_4_19570001 chr2R_19570001 RAL-377 1391 chr2R 19588734 19588782 chr2R 19588832 19588880 16 98 2.0 4.5 3.2 3.8 146 chr2R 19588734 intron sm - chr2R 19588807 intron sm - chr2R 19588880 intron sm - chr2R_16_19585001 chr2R_19585001 RAL-377 1392 chr2R 19603960 19604004 chr2R 19604064 19604107 13 104 3.5 9.0 6.2 1.8 147 chr2R 19603960 intron sm - chr2R 19604034 intron sm - chr2R 19604107 intron sm - chr2R_13_19600001 chr2R_19600001 RAL-377 1393 chr2R 19697925 19697963 chr2R 19698058 19698096 5 133 11.0 14.0 12.5 0.4 171 chr2R 19697925 intron Obp56a + chr2R 19698010 intron Obp56a + chr2R 19698096 exon Obp56a + chr2R_5_19695001 chr2R_19695001 RAL-377 1394 chr2R 19698584 19698605 chr2R 19698674 19698711 6 103 3.0 1.5 2.2 1.9 127 chr2R 19698584 intergenic Obp56a +,Obp56b - chr2R 19698648 intergenic Obp56b -,Obp56a + chr2R 19698711 intergenic Obp56b -,Obp56a + chr2R_6_19695001 chr2R_19695001 RAL-377 1395 chr2R 19701493 19701544 chr2R 19701597 19701645 15 104 1.0 2.0 1.5 6.0 152 chr2R 19701493 intergenic Obp56c - chr2R 19701569 intergenic Obp56c - chr2R 19701645 intergenic not near genes chr2R_15_19700001 chr2R_19700001 RAL-377 1396 chr2R 19776599 19776621 chr2R 19779942 19779964 jockey 6 3343 2.5 8.5 5.5 0.9 3365 chr2R 19776599 intergenic not near genes chr2R 19778282 intergenic not near genes chr2R 19779964 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-377 1397 chr2R 19847131 19847137 chr2R 19847229 19847235 4 98 12.5 11.5 12.0 0.3 104 chr2R 19847131 intergenic not near genes chr2R 19847183 intergenic not near genes chr2R 19847235 intergenic not near genes chr2R_4_19845001 chr2R_19845001 RAL-377 1398 chr2R 19904079 19904132 chr2R 19904247 19904300 13 164 4.0 5.0 4.5 2.4 221 chr2R 19904079 intergenic not near genes chr2R 19904190 intergenic not near genes chr2R 19904300 intergenic not near genes chr2R_13_19900001 chr2R_19900001 RAL-377 1399 chr2R 19914828 19914874 chr2R 19922260 19922306 mdg1 13 7432 6.0 3.0 4.5 2.4 7478 chr2R 19914828 intergenic not near genes chr2R 19918567 intergenic not near genes chr2R 19922306 intergenic not near genes chr2R_13_19915001 chr2R_19915001 RAL-377 1400 chr2R 19957441 19957464 chr2R 19962630 19962684 copia 4 5202 2.0 3.5 2.8 1.1 5243 chr2R 19957441 intergenic CG44623 + chr2R 19960062 intergenic not near genes chr2R 19962684 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-377 1401 chr2R 19967800 19967846 chr2R 19967916 19967941 14 110 10.0 2.0 6.0 2.0 141 chr2R 19967800 intergenic not near genes chr2R 19967870 intergenic not near genes chr2R 19967941 intergenic not near genes chr2R_14_19965001 chr2R_19965001 RAL-377 1402 chr2R 19987815 19987835 chr2R 19987912 19987937 13 101 3.5 8.5 6.0 1.9 122 chr2R 19987815 intergenic not near genes chr2R 19987876 intergenic not near genes chr2R 19987937 intergenic not near genes chr2R_13_19985001 chr2R_19985001 RAL-377 1403 chr2R 19997263 19997303 chr2R 19997368 19997410 7 107 9.5 12.0 10.8 0.6 147 chr2R 19997263 intergenic not near genes chr2R 19997336 intergenic not near genes chr2R 19997410 intergenic not near genes chr2R_7_19995001 chr2R_19995001 RAL-377 1404 chr2R 20006230 20006275 chr2R 20006329 20006369 20 98 4.5 3.5 4.0 4.0 139 chr2R 20006230 intergenic not near genes chr2R 20006300 intergenic not near genes chr2R 20006369 intergenic not near genes chr2R_20_20005001 chr2R_20005001 RAL-377 1405 chr2R 20069222 20069249 chr2R 20071872 20071899 opus 5 2650 2.0 6.5 4.2 1.0 2677 chr2R 20069222 intergenic not near genes chr2R 20070560 intergenic not near genes chr2R 20071899 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-377 1406 chr2R 20087996 20088026 chr2R 20088124 20088154 1360 10 125 3.5 9.5 6.5 1.3 158 chr2R 20087996 intergenic not near genes chr2R 20088075 intergenic not near genes chr2R 20088154 intergenic not near genes chr2R_10_20085001 chr2R_20085001 RAL-377 1407 chr2R 20192492 20192534 chr2R 20192590 20192635 9 101 11.5 10.0 10.8 0.8 143 chr2R 20192492 intergenic not near genes chr2R 20192564 intergenic not near genes chr2R 20192635 intergenic not near genes chr2R_9_20190001 chr2R_20190001 RAL-377 1408 chr2R 20219874 20219902 chr2R 20219978 20220006 7 104 4.5 6.0 5.2 1.1 132 chr2R 20219874 intergenic not near genes chr2R 20219940 intergenic not near genes chr2R 20220006 intergenic not near genes chr2R_7_20215001 chr2R_20215001 RAL-377 1409 chr2R 20271841 20271875 chr2R 20271943 20271977 6 104 9.0 10.0 9.5 0.6 136 chr2R 20271841 3` UTR CG10444 - chr2R 20271909 3` UTR CG10444 - chr2R 20271977 3` UTR CG10444 - chr2R_6_20270001 chr2R_20270001 RAL-377 1410 chr2R 20301826 20301867 chr2R 20301952 20301994 5 127 0.0 3.5 1.8 1.8 168 chr2R 20301826 intergenic CR44640 + chr2R 20301910 intergenic CR44640 + chr2R 20301994 intergenic CR44640 + chr2R_5_20300001 chr2R_20300001 RAL-377 1411 chr2R 20321212 20321261 chr2R 20321323 20321372 11 109 4.5 6.5 5.5 1.7 160 chr2R 20321212 intron CG8920 + chr2R 20321292 intron CG8920 + chr2R 20321372 intron CG8920 + chr2R_11_20320001 chr2R_20320001 RAL-377 1412 chr2R 20326740 20326794 chr2R 20326837 20326891 12 92 10.5 15.0 12.8 0.9 151 chr2R 20326740 5` UTR MED8 - chr2R 20326816 intergenic MED8 -,CG8929 + chr2R 20326891 intergenic MED8 -,CG8929 + chr2R_12_20325001 chr2R_20325001 RAL-377 1413 chr2R 20336346 20336365 chr2R 20336459 20336479 5 114 11.0 6.5 8.8 0.5 133 chr2R 20336346 intergenic not near genes chr2R 20336412 intergenic not near genes chr2R 20336479 intergenic not near genes chr2R_5_20335001 chr2R_20335001 RAL-377 1414 chr2R 20338739 20338763 chr2R 20338839 20338863 11 100 7.5 0.0 3.8 2.3 124 chr2R 20338739 intergenic not near genes chr2R 20338801 intergenic not near genes chr2R 20338863 intergenic not near genes chr2R_11_20335001 chr2R_20335001 RAL-377 1415 chr2R 20380061 20380099 chr2R 20380158 20380202 8 100 6.5 11.0 8.8 0.8 141 chr2R 20380061 intergenic not near genes chr2R 20380132 intergenic not near genes chr2R 20380202 intergenic not near genes chr2R_8_20380001 chr2R_20380001 RAL-377 1416 chr2R 20384531 20384546 chr2R 20384636 20384651 6 105 11.0 13.0 12.0 0.5 120 chr2R 20384531 intergenic not near genes chr2R 20384591 intergenic not near genes chr2R 20384651 intergenic not near genes chr2R_6_20380001 chr2R_20380001 RAL-377 1417 chr2R 20387651 20387692 chr2R 20387763 20387804 6 110 9.5 10.5 10.0 0.5 153 chr2R 20387651 intergenic not near genes chr2R 20387728 intergenic not near genes chr2R 20387804 intergenic not near genes chr2R_6_20385001 chr2R_20385001 RAL-377 1418 chr2R 20395151 20395187 chr2R 20395249 20395284 20 97 6.5 6.5 6.5 2.7 133 chr2R 20395151 intergenic not near genes chr2R 20395218 intergenic not near genes chr2R 20395284 intergenic not near genes chr2R_20_20395001 chr2R_20395001 RAL-377 1419 chr2R 20498884 20498922 chr2R 20498987 20499026 5 104 4.0 4.5 4.2 1.0 142 chr2R 20498884 intergenic not near genes chr2R 20498955 intergenic not near genes chr2R 20499026 intergenic not near genes chr2R_5_20495001 chr2R_20495001 RAL-377 1420 chr2R 20504944 20504978 chr2R 20505049 20505083 11 105 0.0 2.5 1.2 5.0 139 chr2R 20504944 3` UTR Obp57b + chr2R 20505014 3` UTR Obp57b + chr2R 20505083 3` UTR Obp57b + chr2R_11_20505001 chr2R_20505001 RAL-377 1421 chr2R 20506782 20506827 chr2R 20506892 20506937 4 110 13.5 12.5 13.0 0.3 155 chr2R 20506782 5` UTR CR44645 + chr2R 20506860 5` UTR CR44645 + chr2R 20506937 intergenic CR44645 + chr2R_4_20505001 chr2R_20505001 RAL-377 1422 chr2R 20541970 20542005 chr2R 20542068 20542103 6 98 6.0 2.0 4.0 1.2 133 chr2R 20541970 intergenic not near genes chr2R 20542036 intergenic not near genes chr2R 20542103 intergenic not near genes chr2R_6_20540001 chr2R_20540001 RAL-377 1423 chr2R 20577073 20577097 chr2R 20577176 20577200 8 103 1.0 0.0 0.5 5.3 127 chr2R 20577073 intron qsm - chr2R 20577136 intron qsm - chr2R 20577200 intron qsm - chr2R_8_20575001 chr2R_20575001 RAL-377 1424 chr2R 20578632 20578686 chr2R 20578741 20578795 5 109 0.0 5.5 2.8 1.3 163 chr2R 20578632 intron qsm - chr2R 20578714 intron qsm - chr2R 20578795 intron qsm - chr2R_5_20575001 chr2R_20575001 RAL-377 1425 chr2R 20592568 20592597 chr2R 20592666 20592695 5 97 1.0 2.5 1.8 1.8 127 chr2R 20592568 intron bl + chr2R 20592632 intron bl + chr2R 20592695 intron bl + chr2R_5_20590001 chr2R_20590001 RAL-377 1426 chr2R 20690743 20690786 chr2R 20690836 20690871 6 90 4.0 4.0 4.0 1.2 128 chr2R 20690743 intergenic not near genes chr2R 20690807 intergenic not near genes chr2R 20690871 intergenic not near genes chr2R_6_20690001 chr2R_20690001 RAL-377 1427 chr2R 20702656 20702666 chr2R 20702752 20702762 4 96 14.0 9.5 11.8 0.3 106 chr2R 20702656 intron dpr + chr2R 20702709 intron dpr + chr2R 20702762 intron dpr + chr2R_4_20700001 chr2R_20700001 RAL-377 1428 chr2R 20725043 20725077 chr2R 20725185 20725204 4 138 8.0 11.5 9.8 0.4 161 chr2R 20725043 intron dpr + chr2R 20725124 intron dpr + chr2R 20725204 intron dpr + chr2R_4_20725001 chr2R_20725001 RAL-377 1429 chr2R 20739424 20739469 chr2R 20744212 20744257 F-element 6 4787 4.0 2.0 3.0 1.5 4833 chr2R 20739424 intron dpr + chr2R 20741840 intron dpr + chr2R 20744257 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-377 1430 chr2R 20759788 20759815 chr2R 20759884 20759910 7 96 4.5 6.0 5.2 1.1 122 chr2R 20759788 intergenic not near genes chr2R 20759849 intergenic not near genes chr2R 20759910 intergenic not near genes chr2R_7_20755001 chr2R_20755001 RAL-377 1431 chr2R 20783300 20783331 chr2R 20788092 20788123 F-element 6 4792 1.5 6.0 3.8 1.2 4823 chr2R 20783300 intergenic not near genes chr2R 20785712 intergenic not near genes chr2R 20788123 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-377 1432 chr2R 20814385 20814410 chr2R 20815214 20815239 7 829 9.0 16.0 12.5 0.5 854 chr2R 20814385 intergenic not near genes chr2R 20814812 intergenic not near genes chr2R 20815239 intergenic not near genes chr2R_7_20810001 chr2R_20810001 RAL-377 1433 chr2R 20830520 20830566 chr2R 20830617 20830666 8 98 12.5 12.5 12.5 0.6 146 chr2R 20830520 intron,intron insc -,sktl - chr2R 20830593 intron,intron insc -,sktl - chr2R 20830666 intron,intron insc -,sktl - chr2R_8_20830001 chr2R_20830001 RAL-377 1434 chr2R 20838065 20838077 chr2R 20838166 20838178 6 100 17.0 19.0 18.0 0.3 113 chr2R 20838065 intron CR44667 + chr2R 20838122 intron CR44667 + chr2R 20838178 intron CR44667 + chr2R_6_20835001 chr2R_20835001 RAL-377 1435 chr2R 20848910 20848962 chr2R 20849016 20849068 5 101 6.5 4.0 5.2 0.8 158 chr2R 20848910 exon CG17999 - chr2R 20848989 intron CG17999 - chr2R 20849068 intron CG17999 - chr2R_5_20845001 chr2R_20845001 RAL-377 1436 chr2R 20863102 20863133 chr2R 20863208 20863239 5 103 10.0 7.5 8.8 0.5 137 chr2R 20863102 intergenic not near genes chr2R 20863170 intergenic not near genes chr2R 20863239 intergenic not near genes chr2R_5_20860001 chr2R_20860001 RAL-377 1437 chr2R 20895573 20895581 chr2R 20895664 20895684 4 100 7.0 3.5 5.2 0.6 111 chr2R 20895573 intron otp - chr2R 20895628 intron otp - chr2R 20895684 intron otp - chr2R_4_20895001 chr2R_20895001 RAL-377 1438 chr2R 20895589 20895598 chr2R 20895654 20895701 4 93 4.0 3.0 3.5 0.9 112 chr2R 20895589 intron otp - chr2R 20895645 intron otp - chr2R 20895701 intron otp - chr2R_4_20895001 chr2R_20895001 RAL-377 1439 chr2R 20910846 20910856 chr2R 20910951 20910961 4 105 6.0 7.0 6.5 0.5 115 chr2R 20910846 intergenic CG9235 + chr2R 20910904 intergenic CG9235 + chr2R 20910961 intergenic CG9235 + chr2R_4_20910001 chr2R_20910001 RAL-377 1440 chr2R 20962885 20962938 chr2R 20963003 20963051 10 118 9.0 1.5 5.2 1.6 166 chr2R 20962885 intergenic not near genes chr2R 20962968 intergenic not near genes chr2R 20963051 intergenic not near genes chr2R_10_20960001 chr2R_20960001 RAL-377 1441 chr2R 21040846 21040893 chr2R 21040942 21040989 7 93 9.0 10.0 9.5 0.7 143 chr2R 21040846 intergenic not near genes chr2R 21040918 intergenic not near genes chr2R 21040989 intergenic not near genes chr2R_7_21040001 chr2R_21040001 RAL-377 1442 chr2R 21043640 21043686 chr2R 21043745 21043800 4 118 16.5 14.5 15.5 0.2 160 chr2R 21043640 intergenic not near genes chr2R 21043720 intergenic not near genes chr2R 21043800 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-377 1443 chr2R 21113464 21113484 chr2R 21113570 21113593 9 109 8.0 4.0 6.0 1.3 129 chr2R 21113464 intron ktub + chr2R 21113528 intron ktub + chr2R 21113593 intron ktub + chr2R_9_21110001 chr2R_21110001 RAL-377 1444 chr2R 21151128 21151146 chr2R 21153808 21153826 opus 11 2679 0.0 6.5 3.2 2.6 2698 chr2R 21151128 intron CG30389 - chr2R 21152477 intron CG30389 - chr2R 21153826 intron CG30389 - chr2R_11_21150001 chr2R_21150001 RAL-377 1445 chr2R 21188234 21188250 chr2R 21188334 21188350 12 101 3.5 9.5 6.5 1.6 116 chr2R 21188234 exon tud + chr2R 21188292 intron tud + chr2R 21188350 intron tud + chr2R_12_21185001 chr2R_21185001 RAL-377 1446 chr2R 21199982 21200037 chr2R 21200084 21200139 10 97 18.0 20.5 19.2 0.5 157 chr2R 21199982 intergenic CG44245 +,Glycogenin + chr2R 21200060 intergenic CG44245 +,Glycogenin + chr2R 21200139 intergenic CG44245 +,Glycogenin + chr2R_10_21200001 chr2R_21200001 RAL-377 1447 chr2R 21285417 21285435 chr2R 21285513 21285530 8 96 11.0 7.5 9.2 0.8 113 chr2R 21285417 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285474 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285530 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_8_21285001 chr2R_21285001 RAL-377 1448 chr2R 21363116 21363183 chr2R 21363234 21363292 4 114 5.5 8.0 6.8 0.5 176 chr2R 21363116 intron cv-2 - chr2R 21363204 intron cv-2 - chr2R 21363292 intron cv-2 - chr2R_4_21360001 chr2R_21360001 RAL-377 1449 chr2R 21370500 21370530 chr2R 21370627 21370646 9 126 13.5 13.5 13.5 0.6 146 chr2R 21370500 intron cv-2 - chr2R 21370573 intron cv-2 - chr2R 21370646 intron cv-2 - chr2R_9_21370001 chr2R_21370001 RAL-377 1450 chr2R 21370836 21370842 chr2R 21371022 21371028 4 186 18.5 11.0 14.8 0.3 192 chr2R 21370836 intron cv-2 - chr2R 21370932 intron cv-2 - chr2R 21371028 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-377 1451 chr2R 21417264 21417267 chr2R 21417384 21417388 5 121 7.5 0.0 3.8 1.0 124 chr2R 21417264 intron Sdc - chr2R 21417326 intron Sdc - chr2R 21417388 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-377 1452 chr2R 21472305 21472338 chr2R 21472388 21472436 11 96 3.5 3.5 3.5 2.4 131 chr2R 21472305 intron Sdc - chr2R 21472370 intron Sdc - chr2R 21472436 intron Sdc - chr2R_11_21470001 chr2R_21470001 RAL-377 1453 chr2R 21486662 21486702 chr2R 21486778 21486819 7 116 11.5 11.5 11.5 0.6 157 chr2R 21486662 exon Sara + chr2R 21486740 3` UTR Sara + chr2R 21486819 3` UTR Sara + chr2R_7_21485001 chr2R_21485001 RAL-377 1454 chr2R 21508047 21508065 chr2R 21508148 21508166 7 98 24.5 26.0 25.2 0.3 119 chr2R 21508047 intron MESK2 + chr2R 21508106 intron MESK2 + chr2R 21508166 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-377 1455 chr2R 21540668 21540692 chr2R 21540906 21540930 7 238 2.0 3.5 2.8 1.8 262 chr2R 21540668 intron Egfr + chr2R 21540799 intron Egfr + chr2R 21540930 intron Egfr + chr2R_7_21540001 chr2R_21540001 RAL-377 1456 chr2R 21567945 21567969 chr2R 21568060 21568084 5 115 8.5 10.5 9.5 0.5 139 chr2R 21567945 intron CG10440 - chr2R 21568014 intron CG10440 - chr2R 21568084 intron CG10440 - chr2R_5_21565001 chr2R_21565001 RAL-377 1457 chr2R 21671522 21671567 chr2R 21671620 21671665 5 97 14.5 11.5 13.0 0.4 143 chr2R 21671522 3` UTR NC2alpha + chr2R 21671594 intergenic NC2alpha +,CG15676 + chr2R 21671665 intergenic CG15676 +,NC2alpha + chr2R_5_21670001 chr2R_21670001 RAL-377 1458 chr2R 21710919 21710963 chr2R 21711035 21711080 5 117 13.0 12.0 12.5 0.4 161 chr2R 21710919 intron,intron HmgD +,CG30403 - chr2R 21711000 intron,intron HmgD +,CG30403 - chr2R 21711080 intron,intron HmgD +,CG30403 - chr2R_5_21710001 chr2R_21710001 RAL-377 1459 chr2R 21721583 21721609 chr2R 21721663 21721717 5 97 12.5 16.0 14.2 0.3 134 chr2R 21721583 intron LBR + chr2R 21721650 intron LBR + chr2R 21721717 intron LBR + chr2R_5_21720001 chr2R_21720001 RAL-377 1460 chr2R 21725177 21725220 chr2R 21725273 21725316 6 96 10.5 10.5 10.5 0.5 139 chr2R 21725177 intergenic not near genes chr2R 21725246 intergenic not near genes chr2R 21725316 intergenic not near genes chr2R_6_21725001 chr2R_21725001 RAL-377 1461 chr2R 21726681 21726688 chr2R 21726799 21726806 5 118 9.0 0.0 4.5 0.9 125 chr2R 21726681 intergenic not near genes chr2R 21726744 intergenic not near genes chr2R 21726806 intergenic not near genes chr2R_5_21725001 chr2R_21725001 RAL-377 1462 chr2R 21738283 21738299 chr2R 21747438 21747458 roo 4 9159 1.5 3.5 2.5 1.1 9175 chr2R 21738283 intergenic not near genes chr2R 21742870 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-377 1463 chr2R 21753063 21753116 chr2R 21753568 21753621 roo 23 505 1.5 5.0 3.2 5.5 558 chr2R 21753063 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753621 intergenic not near genes chr2R_23_21750001 chr2R_21750001 RAL-377 1464 chr2R 21809509 21809543 chr2R 21817763 21817803 roo 7 8257 4.0 3.5 3.8 1.5 8294 chr2R 21809509 intergenic not near genes chr2R 21813656 intergenic not near genes chr2R 21817803 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-377 1465 chr2R 21830201 21830226 chr2R 21830300 21830325 6 99 13.5 16.0 14.8 0.4 124 chr2R 21830201 intron CG13492 - chr2R 21830263 intron CG13492 - chr2R 21830325 intron CG13492 - chr2R_6_21830001 chr2R_21830001 RAL-377 1466 chr2R 21833502 21833537 chr2R 21833601 21833636 5 99 16.5 13.5 15.0 0.3 134 chr2R 21833502 exon CG34040 - chr2R 21833569 intergenic CG34040 - chr2R 21833636 intergenic CG34040 - chr2R_5_21830001 chr2R_21830001 RAL-377 1467 chr2R 21857336 21857367 chr2R 21857447 21857468 4 108 2.0 3.5 2.8 1.1 132 chr2R 21857336 intergenic not near genes chr2R 21857402 intergenic not near genes chr2R 21857468 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-377 1468 chr2R 21876150 21876182 chr2R 21876288 21876315 4 137 10.0 11.0 10.5 0.3 165 chr2R 21876150 intron Fili + chr2R 21876232 intron Fili + chr2R 21876315 intron Fili + chr2R_4_21875001 chr2R_21875001 RAL-377 1469 chr2R 21888296 21888322 chr2R 21888413 21888439 6 117 5.5 2.0 3.8 1.2 143 chr2R 21888296 intron Fili + chr2R 21888368 intron Fili + chr2R 21888439 intron Fili + chr2R_6_21885001 chr2R_21885001 RAL-377 1470 chr2R 21906262 21906288 chr2R 21906383 21906409 4 121 10.5 8.5 9.5 0.4 147 chr2R 21906262 intron Fili + chr2R 21906336 intron Fili + chr2R 21906409 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-377 1471 chr2R 21922596 21922611 chr2R 21922693 21922704 4 96 6.5 1.5 4.0 0.8 108 chr2R 21922596 intron Fili + chr2R 21922650 intron Fili + chr2R 21922704 intron Fili + chr2R_4_21920001 chr2R_21920001 RAL-377 1472 chr2R 21946747 21946792 chr2R 21946863 21946908 16 116 5.5 4.0 4.8 2.8 161 chr2R 21946747 intergenic Fili + chr2R 21946828 intergenic not near genes chr2R 21946908 intergenic not near genes chr2R_16_21945001 chr2R_21945001 RAL-377 1473 chr2R 21963176 21963196 chr2R 21963281 21963301 6 105 7.0 4.5 5.8 0.9 125 chr2R 21963176 intergenic not near genes chr2R 21963238 intergenic not near genes chr2R 21963301 intergenic not near genes chr2R_6_21960001 chr2R_21960001 RAL-377 1474 chr2R 21985522 21985562 chr2R 21985623 21985663 9 101 4.0 10.0 7.0 1.1 141 chr2R 21985522 intergenic CG30401 - chr2R 21985592 intergenic CG30401 - chr2R 21985663 3` UTR CG30401 - chr2R_9_21985001 chr2R_21985001 RAL-377 1475 chr2R 22009756 22009806 chr2R 22009852 22009902 15 95 1.0 4.0 2.5 4.3 146 chr2R 22009756 intron CG34370 - chr2R 22009829 intron CG34370 - chr2R 22009902 intron CG34370 - chr2R_15_22005001 chr2R_22005001 RAL-377 1476 chr2R 22029461 22029504 chr2R 22029619 22029661 6 155 6.5 1.5 4.0 1.2 200 chr2R 22029461 intron CG34370 - chr2R 22029561 intron CG34370 - chr2R 22029661 intron CG34370 - chr2R_6_22025001 chr2R_22025001 RAL-377 1477 chr2R 22029511 22029521 chr2R 22029604 22029619 5 97 2.5 0.5 1.5 2.0 108 chr2R 22029511 intron CG34370 - chr2R 22029565 intron CG34370 - chr2R 22029619 intron CG34370 - chr2R_5_22025001 chr2R_22025001 RAL-377 1478 chr2R 22053731 22053745 chr2R 22053891 22053905 4 160 10.5 9.5 10.0 0.4 174 chr2R 22053731 intergenic not near genes chr2R 22053818 intergenic not near genes chr2R 22053905 intergenic not near genes chr2R_4_22050001 chr2R_22050001 RAL-377 1479 chr2R 22072681 22072712 chr2R 22072776 22072801 13 102 4.0 3.0 3.5 2.9 120 chr2R 22072681 intron CG11474 - chr2R 22072741 intron CG11474 - chr2R 22072801 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-377 1480 chr2R 22095943 22095992 chr2R 22096043 22096093 7 101 11.0 10.5 10.8 0.6 150 chr2R 22095943 intron CG11073 - chr2R 22096018 intron CG11073 - chr2R 22096093 intron CG11073 - chr2R_7_22095001 chr2R_22095001 RAL-377 1481 chr2R 22099855 22099882 chr2R 22099956 22099983 9 101 6.0 9.5 7.8 1.0 128 chr2R 22099855 intergenic CG11073 - chr2R 22099919 intergenic CG11073 - chr2R 22099983 intergenic CG11073 - chr2R_9_22095001 chr2R_22095001 RAL-377 1482 chr2R 22120775 22120811 chr2R 22121026 22121033 4 244 0.0 2.5 1.2 1.8 258 chr2R 22120775 intron Vrp1 - chr2R 22120904 intron Vrp1 - chr2R 22121033 intron Vrp1 - chr2R_4_22120001 chr2R_22120001 RAL-377 1483 chr2R 22124288 22124332 chr2R 22124397 22124441 10 109 10.5 10.0 10.2 0.9 153 chr2R 22124288 3` UTR mei-S332 + chr2R 22124364 3` UTR mei-S332 + chr2R 22124441 intergenic mei-S332 +,GM130 - chr2R_10_22120001 chr2R_22120001 RAL-377 1484 chr2R 22185675 22185687 chr2R 22185794 22185800 5 118 4.0 1.0 2.5 1.4 125 chr2R 22185675 3` UTR MED16 + chr2R 22185738 3` UTR MED16 + chr2R 22185800 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-377 1485 chr2R 22189448 22189476 chr2R 22189594 22189623 6 147 13.5 9.5 11.5 0.5 175 chr2R 22189448 3` UTR Vps35 + chr2R 22189536 3` UTR Vps35 + chr2R 22189623 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-377 1486 chr2R 22252410 22252426 chr2R 22252494 22252529 6 98 7.5 8.5 8.0 0.7 119 chr2R 22252410 intron dve + chr2R 22252470 intron dve + chr2R 22252529 intron dve + chr2R_6_22250001 chr2R_22250001 RAL-377 1487 chr2R 22290058 22290083 chr2R 22290162 22290168 9 101 6.5 4.0 5.2 1.5 110 chr2R 22290058 intergenic not near genes chr2R 22290113 intergenic not near genes chr2R 22290168 intergenic not near genes chr2R_9_22290001 chr2R_22290001 RAL-377 1488 chr2R 22349680 22349717 chr2R 22351482 22351515 jockey 13 1801 3.0 5.5 4.2 2.5 1835 chr2R 22349680 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351515 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 RAL-377 1489 chr2R 22360375 22360377 chr2R 22360828 22360830 jockey 4 453 9.0 4.5 6.8 0.5 455 chr2R 22360375 intron Liprin-gamma - chr2R 22360602 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-377 1490 chr2R 22362645 22362679 chr2R 22362744 22362760 7 95 9.5 12.0 10.8 0.6 115 chr2R 22362645 intron Liprin-gamma - chr2R 22362702 intron Liprin-gamma - chr2R 22362760 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-377 1491 chr2R 22368590 22368606 chr2R 22368701 22368711 5 110 13.0 7.5 10.2 0.4 121 chr2R 22368590 intron Liprin-gamma - chr2R 22368650 intron Liprin-gamma - chr2R 22368711 intron Liprin-gamma - chr2R_5_22365001 chr2R_22365001 RAL-377 1492 chr2R 22377788 22377839 chr2R 22377894 22377943 6 103 5.5 6.0 5.8 0.9 155 chr2R 22377788 3` UTR Rtf1 + chr2R 22377866 3` UTR Rtf1 + chr2R 22377943 3` UTR Rtf1 + chr2R_6_22375001 chr2R_22375001 RAL-377 1493 chr2R 22380344 22380371 chr2R 22380454 22380482 8 111 13.5 10.5 12.0 0.6 138 chr2R 22380344 intron wrapper + chr2R 22380413 intron wrapper + chr2R 22380482 intron wrapper + chr2R_8_22380001 chr2R_22380001 RAL-377 1494 chr2R 22465298 22465322 chr2R 22465511 22465535 BS 4 213 12.0 5.5 8.8 0.4 237 chr2R 22465298 intron CG10384 + chr2R 22465416 intron CG10384 + chr2R 22465535 intron CG10384 + chr2R_4_22465001 chr2R_22465001 RAL-377 1495 chr2R 22503855 22503897 chr2R 22503970 22504012 13 115 0.0 3.5 1.8 4.6 157 chr2R 22503855 intron px - chr2R 22503934 intron px - chr2R 22504012 intron px - chr2R_13_22500001 chr2R_22500001 RAL-377 1496 chr2R 22505397 22505447 chr2R 22505610 22505622 7 209 5.0 3.5 4.2 1.3 225 chr2R 22505397 intron px - chr2R 22505510 intron px - chr2R 22505622 intron px - chr2R_7_22505001 chr2R_22505001 RAL-377 1497 chr2R 22506696 22506714 chr2R 22506794 22506812 5 98 8.0 1.0 4.5 0.9 116 chr2R 22506696 intron px - chr2R 22506754 intron px - chr2R 22506812 intron px - chr2R_5_22505001 chr2R_22505001 RAL-377 1498 chr2R 22525735 22525782 chr2R 22529309 22529342 jockey 10 3575 1.0 1.5 1.2 4.5 3607 chr2R 22525735 intron px - chr2R 22527538 intron px - chr2R 22529342 intron px - chr2R_10_22525001 chr2R_22525001 RAL-377 1499 chr2R 22620809 22620848 chr2R 22620929 22620967 7 108 10.0 6.5 8.2 0.8 158 chr2R 22620809 5` UTR CG33143 + chr2R 22620888 5` UTR CG33143 + chr2R 22620967 5` UTR CG33143 + chr2R_7_22620001 chr2R_22620001 RAL-377 1500 chr2R 22623447 22623482 chr2R 22623603 22623642 9 159 13.0 18.5 15.8 0.5 195 chr2R 22623447 intron CG33143 + chr2R 22623544 intron CG33143 + chr2R 22623642 intron CG33143 + chr2R_9_22620001 chr2R_22620001 RAL-377 1501 chr2R 22729447 22729467 chr2R 22729668 22729695 INE-1 7 225 5.5 10.0 7.8 0.8 248 chr2R 22729447 intron jbug - chr2R 22729571 intron jbug - chr2R 22729695 intron jbug - chr2R_7_22725001 chr2R_22725001 RAL-377 1502 chr2R 22774951 22774995 chr2R 22775390 22775434 jockey 12 439 5.5 7.0 6.2 1.7 483 chr2R 22774951 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775434 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-377 1503 chr2R 22795641 22795697 chr2R 22795746 22795782 5 100 9.0 8.0 8.5 0.5 141 chr2R 22795641 intron CG42260 - chr2R 22795712 intron CG42260 - chr2R 22795782 intron CG42260 - chr2R_5_22795001 chr2R_22795001 RAL-377 1504 chr2R 22839477 22839493 chr2R 22839576 22839592 6 99 15.0 12.5 13.8 0.4 115 chr2R 22839477 intergenic CG9825 + chr2R 22839534 intergenic CG9825 + chr2R 22839592 intergenic CG9825 + chr2R_6_22835001 chr2R_22835001 RAL-377 1505 chr2R 22843039 22843051 chr2R 22845021 22845033 flea 5 1982 8.0 6.0 7.0 0.6 1994 chr2R 22843039 intergenic CG9826 + chr2R 22844036 intergenic not near genes chr2R 22845033 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-377 1506 chr2R 22860753 22860832 chr2R 22860864 22861001 15 147 1.0 0.0 0.5 10.0 248 chr2R 22860753 intergenic not near genes chr2R 22860877 intergenic not near genes chr2R 22861001 intergenic not near genes chr2R_15_22860001 chr2R_22860001 RAL-377 1507 chr2R 22941807 22941851 chr2R 22941906 22941950 10 99 11.5 17.5 14.5 0.6 143 chr2R 22941807 intergenic CG42694 + chr2R 22941878 5` UTR CG42694 + chr2R 22941950 5` UTR CG42694 + chr2R_10_22940001 chr2R_22940001 RAL-377 1508 chr2R 22958367 22958389 chr2R 22958502 22958534 6 143 9.0 3.5 6.2 0.8 167 chr2R 22958367 intergenic not near genes chr2R 22958450 intergenic not near genes chr2R 22958534 intergenic not near genes chr2R_6_22955001 chr2R_22955001 RAL-377 1509 chr2R 22958790 22958809 chr2R 22963895 22963916 flea 4 5106 2.0 4.0 3.0 1.0 5126 chr2R 22958790 intergenic not near genes chr2R 22961353 intergenic not near genes chr2R 22963916 intergenic not near genes chr2R_4_22960001 chr2R_22960001 RAL-377 1510 chr2R 22978270 22978313 chr2R 22978368 22978412 4 98 3.0 6.0 4.5 0.7 142 chr2R 22978270 intergenic not near genes chr2R 22978341 intergenic not near genes chr2R 22978412 intergenic not near genes chr2R_4_22975001 chr2R_22975001 RAL-377 1511 chr2R 22993412 22993448 chr2R 22993605 22993642 9 192 3.0 7.5 5.2 1.5 230 chr2R 22993412 intron twi + chr2R 22993527 intron twi + chr2R 22993642 intron twi + chr2R_9_22990001 chr2R_22990001 RAL-377 1512 chr2R 23052631 23052684 chr2R 23052727 23052780 24 95 6.0 6.5 6.2 3.3 149 chr2R 23052631 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052780 intergenic not near genes chr2R_24_23050001 chr2R_23050001 RAL-377 1513 chr2R 23061735 23061786 chr2R 23061831 23061900 17 107 4.5 3.0 3.8 3.5 165 chr2R 23061735 3` UTR l(2)06496 - chr2R 23061818 3` UTR l(2)06496 - chr2R 23061900 3` UTR l(2)06496 - chr2R_17_23060001 chr2R_23060001 RAL-377 1514 chr2R 23162008 23162034 chr2R 23162140 23162167 6 132 6.0 5.5 5.8 0.9 159 chr2R 23162008 exon CG9899 + chr2R 23162088 intergenic CG9899 + chr2R 23162167 intergenic CG9899 + chr2R_6_23160001 chr2R_23160001 RAL-377 1515 chr2R 23175022 23175064 chr2R 23175119 23175159 4 96 7.5 8.5 8.0 0.4 137 chr2R 23175022 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175159 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-377 1516 chr2R 23186554 23186582 chr2R 23186652 23186680 9 98 11.5 5.0 8.2 1.0 126 chr2R 23186554 intron CG34371 - chr2R 23186617 intron CG34371 - chr2R 23186680 intron CG34371 - chr2R_9_23185001 chr2R_23185001 RAL-377 1517 chr2R 23186585 23186595 chr2R 23186671 23186693 6 95 10.5 3.5 7.0 0.8 108 chr2R 23186585 intron CG34371 - chr2R 23186639 intron CG34371 - chr2R 23186693 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-377 1518 chr2R 23188538 23188586 chr2R 23188636 23188684 7 98 6.0 4.5 5.2 1.1 146 chr2R 23188538 intron CG34371 - chr2R 23188611 intron CG34371 - chr2R 23188684 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-377 1519 chr2R 23218696 23218747 chr2R 23218827 23218867 10 129 13.0 11.5 12.2 0.8 171 chr2R 23218696 intergenic not near genes chr2R 23218782 intergenic not near genes chr2R 23218867 intergenic not near genes chr2R_10_23215001 chr2R_23215001 RAL-377 1520 chr2R 23236906 23236939 chr2R 23237014 23237048 8 109 3.0 10.5 6.8 1.0 142 chr2R 23236906 intergenic not near genes chr2R 23236977 intergenic not near genes chr2R 23237048 intergenic not near genes chr2R_8_23235001 chr2R_23235001 RAL-377 1521 chr2R 23351898 23351938 chr2R 23352004 23352043 9 106 5.0 8.5 6.8 1.2 145 chr2R 23351898 exon CG34210 + chr2R 23351970 3` UTR CG34210 + chr2R 23352043 3` UTR CG34210 + chr2R_9_23350001 chr2R_23350001 RAL-377 1522 chr2R 23402590 23402638 chr2R 23407686 23407734 flea 15 5096 8.0 6.0 7.0 1.9 5144 chr2R 23402590 intergenic CG3520 - chr2R 23405162 intergenic not near genes chr2R 23407734 intergenic not near genes chr2R_15_23405001 chr2R_23405001 RAL-377 1523 chr2R 23421362 23421385 chr2R 23421454 23421495 4 106 13.5 13.0 13.2 0.3 133 chr2R 23421362 intergenic CG9815 - chr2R 23421428 intergenic CG9815 - chr2R 23421495 intergenic CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-377 1524 chr2R 23508902 23508945 chr2R 23509039 23509082 11 137 10.0 4.5 7.2 1.3 180 chr2R 23508902 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509082 intergenic not near genes chr2R_11_23505001 chr2R_23505001 RAL-377 1525 chr2R 23529568 23529591 chr2R 23537159 23537177 412 4 7592 4.5 4.5 4.5 0.7 7609 chr2R 23529568 intron bw - chr2R 23533372 intron bw - chr2R 23537177 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-377 1526 chr2R 23553711 23553745 chr2R 23553821 23553855 7 110 8.5 12.5 10.5 0.6 144 chr2R 23553711 intron pita - chr2R 23553783 intron pita - chr2R 23553855 intron pita - chr2R_7_23550001 chr2R_23550001 RAL-377 1527 chr2R 23595896 23595926 chr2R 23595982 23596021 5 94 9.0 13.0 11.0 0.4 125 chr2R 23595896 intron apt + chr2R 23595958 intron apt + chr2R 23596021 intron apt + chr2R_5_23595001 chr2R_23595001 RAL-377 1528 chr2R 23607016 23607192 chr2R 23607117 23607305 29 106 2.5 2.5 2.5 8.3 289 chr2R 23607016 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607305 intron CG17664 - chr2R_29_23605001 chr2R_23605001 RAL-377 1529 chr2R 23654070 23654111 chr2R 23654176 23654215 17 100 12.0 17.0 14.5 1.1 145 chr2R 23654070 3` UTR retn + chr2R 23654142 3` UTR retn + chr2R 23654215 3` UTR retn + chr2R_17_23650001 chr2R_23650001 RAL-377 1530 chr2R 23651331 23651352 chr2R 23656167 23656187 6 4835 21.0 16.0 18.5 0.3 4856 chr2R 23651331 intron retn + chr2R 23653759 exon retn + chr2R 23656187 intergenic not near genes chr2R_6_23650001 chr2R_23650001 RAL-377 1531 chr2R 23771258 23771301 chr2R 23771358 23771399 5 98 9.5 3.5 6.5 0.7 141 chr2R 23771258 intron CG9850 - chr2R 23771328 intron CG9850 - chr2R 23771399 intron CG9850 - chr2R_5_23770001 chr2R_23770001 RAL-377 1532 chr2R 23784461 23784498 chr2R 23784559 23784596 8 97 10.0 12.5 11.2 0.7 135 chr2R 23784461 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784596 intron CG9850 - chr2R_8_23780001 chr2R_23780001 RAL-377 1533 chr2R 23832364 23832409 chr2R 23832473 23832519 11 108 9.0 10.0 9.5 1.0 155 chr2R 23832364 intron CG5549 + chr2R 23832442 intron CG5549 + chr2R 23832519 intron CG5549 + chr2R_11_23830001 chr2R_23830001 RAL-377 1534 chr2R 23877716 23877760 chr2R 23878207 23878251 297 5 491 6.0 12.0 9.0 0.5 535 chr2R 23877716 intergenic ken +,TM4SF + chr2R 23877984 intergenic TM4SF + chr2R 23878251 5` UTR TM4SF + chr2R_5_23875001 chr2R_23875001 RAL-377 1535 chr2R 23897830 23897881 chr2R 23898195 23898240 6 360 6.0 10.0 8.0 0.7 410 chr2R 23897830 exon CG5339 - chr2R 23898035 intron CG5339 - chr2R 23898240 5` UTR CG5339 - chr2R_6_23895001 chr2R_23895001 RAL-377 1536 chr2R 23914288 23914330 chr2R 23921932 23921974 412 12 7641 4.0 4.0 4.0 2.4 7686 chr2R 23914288 exon kcc + chr2R 23918131 intron kcc + chr2R 23921974 exon kcc + chr2R_12_23915001 chr2R_23915001 RAL-377 1537 chr2R 23926817 23926865 chr2R 23926919 23926936 9 99 7.5 11.5 9.5 0.9 119 chr2R 23926817 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926876 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926936 3` UTR Ca-P60A - chr2R_9_23925001 chr2R_23925001 RAL-377 1538 chr2R 23986496 23986544 chr2R 23986596 23986644 12 100 2.5 6.0 4.2 2.3 148 chr2R 23986496 intron Phm - chr2R 23986570 intron Phm - chr2R 23986644 intron,5` UTR Phm -,CG30178 + chr2R_12_23985001 chr2R_23985001 RAL-377 1539 chr2R 23992317 23992354 chr2R 23992410 23992459 6 102 14.0 8.0 11.0 0.5 142 chr2R 23992317 3` UTR CG3860 - chr2R 23992388 3` UTR CG3860 - chr2R 23992459 3` UTR CG3860 - chr2R_6_23990001 chr2R_23990001 RAL-377 1540 chr2R 24031367 24031413 chr2R 24031471 24031517 18 104 5.0 5.5 5.2 2.9 150 chr2R 24031367 5` UTR CG30172 - chr2R 24031442 intergenic CG30172 -,Chi - chr2R 24031517 intergenic Chi -,CG30172 - chr2R_18_24030001 chr2R_24030001 RAL-377 1541 chr2R 24058029 24058048 chr2R 24058130 24058149 7 101 11.5 15.5 13.5 0.5 120 chr2R 24058029 intron eIF-5A + chr2R 24058089 intron eIF-5A + chr2R 24058149 intron eIF-5A + chr2R_7_24055001 chr2R_24055001 RAL-377 1542 chr2R 24127401 24127408 chr2R 24127542 24127549 7 141 17.5 7.0 12.2 0.5 148 chr2R 24127401 3` UTR tamo - chr2R 24127475 3` UTR tamo - chr2R 24127549 3` UTR tamo - chr2R_7_24125001 chr2R_24125001 RAL-377 1543 chr2R 24127415 24127448 chr2R 24127539 24127589 12 140 9.0 7.0 8.0 1.3 174 chr2R 24127415 3` UTR tamo - chr2R 24127502 3` UTR tamo - chr2R 24127589 3` UTR tamo - chr2R_12_24125001 chr2R_24125001 RAL-377 1544 chr2R 24144067 24144136 chr2R 24144179 24144261 8 131 5.5 3.0 4.2 1.5 194 chr2R 24144067 intron Dat + chr2R 24144164 intron Dat + chr2R 24144261 intron Dat + chr2R_8_24140001 chr2R_24140001 RAL-377 1545 chr2R 24147063 24147081 chr2R 24154644 24154679 412 5 7585 2.5 1.5 2.0 1.7 7616 chr2R 24147063 intron Dat + chr2R 24150871 intron Dat + chr2R 24154679 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-377 1546 chr2R 24177215 24177269 chr2R 24184720 24184773 412 18 7504 2.0 2.0 2.0 6.0 7558 chr2R 24177215 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184773 3` UTR Nop60B + chr2R_18_24180001 chr2R_24180001 RAL-377 1547 chr2R 24270124 24270138 chr2R 24270225 24270240 5 100 4.0 8.5 6.2 0.7 116 chr2R 24270124 intergenic not near genes chr2R 24270182 intergenic not near genes chr2R 24270240 intergenic not near genes chr2R_5_24270001 chr2R_24270001 RAL-377 1548 chr2R 24353407 24353447 chr2R 24361789 24361829 roo 9 8381 2.5 1.0 1.8 3.2 8422 chr2R 24353407 intron,intron bs +,CR44811 - chr2R 24357618 intron,intron bs +,CR44811 - chr2R 24361829 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-377 1549 chr2R 24383809 24383853 chr2R 24383910 24383954 10 101 11.5 9.5 10.5 0.9 145 chr2R 24383809 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383954 exon mAChR-A - chr2R_10_24380001 chr2R_24380001 RAL-377 1550 chr2R 24422474 24422477 chr2R 24422531 24422560 4 78 10.0 14.0 12.0 0.3 86 chr2R 24422474 intron prom - chr2R 24422517 intron prom - chr2R 24422560 intron prom - chr2R_4_24420001 chr2R_24420001 RAL-377 1551 chr2R 24430789 24430833 chr2R 24430890 24430934 10 101 11.0 11.5 11.2 0.8 145 chr2R 24430789 intergenic CG15873 - chr2R 24430862 intergenic CG15873 -,Pgam5-2 - chr2R 24430934 intergenic CG15873 -,Pgam5-2 - chr2R_10_24430001 chr2R_24430001 RAL-377 1552 chr2R 24448381 24448430 chr2R 24448825 24448874 5 444 6.0 9.0 7.5 0.6 493 chr2R 24448381 intergenic not near genes chr2R 24448628 intergenic not near genes chr2R 24448874 intergenic not near genes chr2R_5_24445001 chr2R_24445001 RAL-377 1553 chr2R 24493067 24493089 chr2R 24493176 24493198 13 109 3.0 4.5 3.8 2.7 131 chr2R 24493067 intergenic CG13590 -,CG13589 - chr2R 24493132 intergenic CG13590 -,CG13589 - chr2R 24493198 intergenic CG13590 -,CG13589 - chr2R_13_24490001 chr2R_24490001 RAL-377 1554 chr2R 24499118 24499162 chr2R 24499214 24499258 11 93 17.0 14.0 15.5 0.7 140 chr2R 24499118 intergenic Ssl -,Yu + chr2R 24499188 intergenic Ssl - chr2R 24499258 3` UTR Ssl - chr2R_11_24495001 chr2R_24495001 RAL-377 1555 chr2R 24509295 24509339 chr2R 24509400 24509444 11 101 8.5 13.0 10.8 0.9 149 chr2R 24509295 intergenic Letm1 - chr2R 24509370 intergenic Letm1 - chr2R 24509444 intergenic Letm1 - chr2R_11_24505001 chr2R_24505001 RAL-377 1556 chr2R 24647571 24647609 chr2R 24655148 24655185 412 12 7574 7.0 4.0 5.5 1.8 7614 chr2R 24647571 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655185 intergenic not near genes chr2R_12_24650001 chr2R_24650001 RAL-377 1557 chr2R 24727877 24727914 chr2R 24735405 24735442 mdg1 6 7528 1.0 6.5 3.8 1.2 7565 chr2R 24727877 intron Mid1 - chr2R 24731660 intron Mid1 - chr2R 24735442 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-377 1558 chr2R 24859831 24859870 chr2R 24859932 24859960 5 92 1.5 1.5 1.5 2.0 129 chr2R 24859831 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859960 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-377 1559 chr2R 24884037 24884071 chr2R 24884139 24884173 15 102 7.0 6.0 6.5 2.0 136 chr2R 24884037 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884173 intron NKAIN + chr2R_15_24880001 chr2R_24880001 RAL-377 1560 chr2R 24919068 24919108 chr2R 24919342 24919372 9 273 14.5 11.5 13.0 0.6 304 chr2R 24919068 3` UTR NaCP60E + chr2R 24919220 3` UTR NaCP60E + chr2R 24919372 3` UTR NaCP60E + chr2R_9_24915001 chr2R_24915001 RAL-377 1561 chr2R 18684383 18684405 chr2R 24946850 24946876 roo 6 6262471 10.0 18.0 14.0 0.4 6262493 chr2R 18684383 3` UTR CG44433 - chr2R 21815630 intergenic not near genes chr2R 24946876 exon CG2790 - chr2R_6_21815001 chr2R_21815001 RAL-377 1562 chr2R 25003653 25003689 chr2R 25005097 25005133 10 1444 18.5 21.0 19.8 0.5 1480 chr2R 25003653 intron zip - chr2R 25004393 intron zip - chr2R 25005133 intron zip - chr2R_10_25000001 chr2R_25000001 RAL-377 1563 chr2R 25014527 25014570 chr2R 25014619 25014662 13 93 4.0 3.0 3.5 2.9 135 chr2R 25014527 intron uzip + chr2R 25014594 intron uzip + chr2R 25014662 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-377 1564 chr2R 25018321 25018367 chr2R 25018442 25018480 5 116 10.0 10.5 10.2 0.4 159 chr2R 25018321 intron uzip + chr2R 25018400 intron uzip + chr2R 25018480 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-377 1565 chr2R 25022623 25022670 chr2R 25022727 25022774 12 103 21.0 21.5 21.2 0.5 151 chr2R 25022623 intron uzip + chr2R 25022698 intron uzip + chr2R 25022774 intron uzip + chr2R_12_25020001 chr2R_25020001 RAL-377 1566 chr2R 25047215 25047256 chr2R 25047665 25047706 7 448 11.0 17.5 14.2 0.5 491 chr2R 25047215 intron gsb-n - chr2R 25047460 intron gsb-n - chr2R 25047706 intron gsb-n - chr2R_7_25045001 chr2R_25045001 RAL-377 1567 chr2R 25101254 25101296 chr2R 25101376 25101417 6 121 16.5 14.5 15.5 0.4 163 chr2R 25101254 intron lov - chr2R 25101336 intron lov - chr2R 25101417 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-377 1568 chr2R 25105468 25105507 chr2R 25105591 25105630 6 123 15.5 10.0 12.8 0.4 162 chr2R 25105468 intron lov - chr2R 25105549 intron lov - chr2R 25105630 intron lov - chr2R_6_25105001 chr2R_25105001 RAL-377 1569 chr2R 25141637 25141671 chr2R 25159347 25159381 roo 15 17709 9.5 6.0 7.8 1.7 17744 chr2R 25141637 intergenic not near genes chr2R 25150509 intergenic not near genes chr2R 25159381 intergenic not near genes chr2R_15_25150001 chr2R_25150001 RAL-377 1570 chr2R 25234750 25234799 chr2R 25234850 25234899 10 99 14.5 18.0 16.2 0.6 149 chr2R 25234750 intron CG9380 - chr2R 25234824 intron CG9380 - chr2R 25234899 intron CG9380 - chr2R_10_25230001 chr2R_25230001 RAL-377 1571 chr2R 25253428 25253477 chr2R 25253524 25253574 12 94 15.0 9.5 12.2 0.9 146 chr2R 25253428 intron,intron CG9380 -,CG30428 + chr2R 25253501 intron,intron CG9380 -,CG30428 + chr2R 25253574 intron,intron CG9380 -,CG30428 + chr2R_12_25250001 chr2R_25250001 RAL-377 1572 chr3L 110191 110240 chr3L 119378 119427 roo 23 9185 3.0 3.0 3.0 5.8 9236 chr3L 110191 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119427 intergenic not near genes chr3L_23_110001 chr3L_110001 RAL-377 1573 chr3L 375229 375270 chr3L 375333 375374 5 104 0.0 3.0 1.5 2.0 145 chr3L 375229 intron trh - chr3L 375302 intron trh - chr3L 375374 intron trh - chr3L_5_375001 chr3L_375001 RAL-377 1574 chr3L 402689 402714 chr3L 409759 409783 297 7 7071 3.0 9.0 6.0 1.0 7094 chr3L 402689 intergenic not near genes chr3L 406236 intergenic not near genes chr3L 409783 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-377 1575 chr3L 428172 428191 chr3L 428313 428327 7 140 5.0 0.0 2.5 2.0 155 chr3L 428172 intergenic not near genes chr3L 428250 intergenic not near genes chr3L 428327 intergenic not near genes chr3L_7_425001 chr3L_425001 RAL-377 1576 chr3L 445529 445570 chr3L 445625 445655 6 92 1.5 0.5 1.0 3.0 126 chr3L 445529 exon klar - chr3L 445592 intron klar - chr3L 445655 intron klar - chr3L_6_445001 chr3L_445001 RAL-377 1577 chr3L 498497 498504 chr3L 498595 498599 4 97 3.5 4.0 3.8 0.8 102 chr3L 498497 intron klar - chr3L 498548 intron klar - chr3L 498599 intron klar - chr3L_4_495001 chr3L_495001 RAL-377 1578 chr3L 506306 506321 chr3L 506419 506433 4 113 7.0 0.0 3.5 0.9 127 chr3L 506306 exon klar - chr3L 506370 intron klar - chr3L 506433 intron klar - chr3L_4_505001 chr3L_505001 RAL-377 1579 chr3L 574536 574547 chr3L 576158 576159 5 1630 3.5 2.0 2.8 1.3 1623 chr3L 574536 3` UTR hipk + chr3L 575348 3` UTR hipk + chr3L 576159 3` UTR hipk + chr3L_5_575001 chr3L_575001 RAL-377 1580 chr3L 574548 574562 chr3L 576157 576206 6 1622 1.0 1.5 1.2 2.7 1658 chr3L 574548 3` UTR hipk + chr3L 575377 3` UTR hipk + chr3L 576206 3` UTR hipk + chr3L_6_575001 chr3L_575001 RAL-377 1581 chr3L 606878 606921 chr3L 606974 607020 13 98 1.0 0.0 0.5 8.7 142 chr3L 606878 intergenic Reg-2 - chr3L 606949 intergenic Reg-2 - chr3L 607020 intergenic Reg-2 - chr3L_13_605001 chr3L_605001 RAL-377 1582 chr3L 705227 705261 chr3L 705323 705357 18 95 8.0 5.5 6.8 2.3 130 chr3L 705227 intergenic CR44514 + chr3L 705292 intergenic CR44514 + chr3L 705357 5` UTR CR44514 + chr3L_18_705001 chr3L_705001 RAL-377 1583 chr3L 705879 705911 chr3L 705995 706027 17 116 8.5 3.0 5.8 2.5 148 chr3L 705879 intergenic CG13895 -,CR44514 + chr3L 705953 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_17_705001 chr3L_705001 RAL-377 1584 chr3L 767820 767852 chr3L 767907 767960 16 104 2.5 3.0 2.8 4.2 140 chr3L 767820 intergenic not near genes chr3L 767890 intergenic not near genes chr3L 767960 intergenic not near genes chr3L_16_765001 chr3L_765001 RAL-377 1585 chr3L 789894 789946 chr3L 790399 790451 roo 17 504 5.0 6.0 5.5 2.6 557 chr3L 789894 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790451 intergenic not near genes chr3L_17_790001 chr3L_790001 RAL-377 1586 chr3L 802565 802566 chr3L 11777678 11777678 4 10975112 10.0 9.0 9.5 0.4 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-377 1587 chr3L 824028 824041 chr3L 824130 824143 5 102 2.5 0.0 1.2 2.3 115 chr3L 824028 intergenic not near genes chr3L 824086 intergenic not near genes chr3L 824143 intergenic not near genes chr3L_5_820001 chr3L_820001 RAL-377 1588 chr3L 854162 854203 chr3L 854260 854301 11 98 3.0 0.5 1.8 3.9 139 chr3L 854162 intron dpr20 - chr3L 854232 intron dpr20 - chr3L 854301 exon dpr20 - chr3L_11_850001 chr3L_850001 RAL-377 1589 chr3L 857998 858021 chr3L 866478 866483 Tirant 4 8479 4.5 2.5 3.5 0.9 8485 chr3L 857998 intergenic not near genes chr3L 862240 intergenic not near genes chr3L 866483 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-377 1590 chr3L 899995 900019 chr3L 900084 900123 15 103 0.0 6.5 3.2 3.6 128 chr3L 899995 intergenic not near genes chr3L 900059 intergenic not near genes chr3L 900123 intergenic not near genes chr3L_15_900001 chr3L_900001 RAL-377 1591 chr3L 925158 925168 chr3L 932604 932614 mdg1 5 7446 12.5 4.5 8.5 0.5 7456 chr3L 925158 intron Glut1 + chr3L 928886 intron Glut1 + chr3L 932614 intron Glut1 + chr3L_5_925001 chr3L_925001 RAL-377 1592 chr3L 925172 925187 chr3L 932600 932633 mdg1 9 7443 5.0 4.0 4.5 1.6 7461 chr3L 925172 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-377 1593 chr3L 933889 933944 chr3L 934013 934066 8 123 2.5 4.0 3.2 1.9 177 chr3L 933889 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934066 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-377 1594 chr3L 939761 939801 chr3L 940902 940912 jockey 13 1138 3.0 7.5 5.2 2.1 1151 chr3L 939761 intron Glut1 + chr3L 940336 intron Glut1 + chr3L 940912 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-377 1595 chr3L 958296 958348 chr3L 958400 958452 27 103 3.5 4.5 4.0 5.4 156 chr3L 958296 intron Glut1 + chr3L 958374 intron Glut1 + chr3L 958452 intron Glut1 + chr3L_27_955001 chr3L_955001 RAL-377 1596 chr3L 960999 961041 chr3L 961112 961154 17 113 6.5 6.0 6.2 2.4 155 chr3L 960999 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961154 intron Glut1 + chr3L_17_960001 chr3L_960001 RAL-377 1597 chr3L 976484 976518 chr3L 976580 976614 9 96 5.5 3.0 4.2 1.7 130 chr3L 976484 intron Glut1 + chr3L 976549 intron Glut1 + chr3L 976614 intron Glut1 + chr3L_9_975001 chr3L_975001 RAL-377 1598 chr3L 1021364 1021405 chr3L 1021464 1021502 14 95 2.5 5.0 3.8 2.9 138 chr3L 1021364 intron trio - chr3L 1021433 intron trio - chr3L 1021502 intron trio - chr3L_14_1020001 chr3L_1020001 RAL-377 1599 chr3L 1040529 1040580 chr3L 1040633 1040684 14 102 2.0 5.5 3.8 2.9 155 chr3L 1040529 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040684 intron bab1 - chr3L_14_1040001 chr3L_1040001 RAL-377 1600 chr3L 1042942 1042949 chr3L 1043040 1043047 5 98 13.0 0.0 6.5 0.7 105 chr3L 1042942 intron bab1 - chr3L 1042994 intron bab1 - chr3L 1043047 intron bab1 - chr3L_5_1040001 chr3L_1040001 RAL-377 1601 chr3L 1047380 1047384 chr3L 1055166 1055194 412 4 7795 1.0 1.5 1.2 1.8 7814 chr3L 1047380 intron bab1 - chr3L 1051287 intron bab1 - chr3L 1055194 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-377 1602 chr3L 1109612 1109662 chr3L 1109720 1109770 18 107 4.0 5.0 4.5 3.3 158 chr3L 1109612 intergenic not near genes chr3L 1109691 intergenic not near genes chr3L 1109770 intergenic not near genes chr3L_18_1105001 chr3L_1105001 RAL-377 1603 chr3L 1154117 1154160 chr3L 1163287 1163329 roo 11 9169 5.5 3.0 4.2 2.1 9212 chr3L 1154117 intron bab2 - chr3L 1158723 intron bab2 - chr3L 1163329 intron bab2 - chr3L_11_1155001 chr3L_1155001 RAL-377 1604 chr3L 1219583 1219620 chr3L 1227336 1227352 412 10 7748 2.5 2.5 2.5 2.9 7769 chr3L 1219583 intron mwh + chr3L 1223468 intron mwh + chr3L 1227352 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-377 1605 chr3L 1265065 1265097 chr3L 1265170 1265202 10 104 9.5 0.5 5.0 1.7 137 chr3L 1265065 intron CG9134 + chr3L 1265134 intron CG9134 + chr3L 1265202 intron CG9134 + chr3L_10_1265001 chr3L_1265001 RAL-377 1606 chr3L 1347139 1347186 chr3L 1347244 1347251 10 92 3.0 5.0 4.0 2.0 112 chr3L 1347139 intron Ptp61F - chr3L 1347195 intron Ptp61F - chr3L 1347251 intron Ptp61F - chr3L_10_1345001 chr3L_1345001 RAL-377 1607 chr3L 1358739 1358790 chr3L 1359140 1359182 9 397 3.5 0.5 2.0 3.0 443 chr3L 1358739 intron Ptp61F - chr3L 1358960 intron Ptp61F - chr3L 1359182 intron Ptp61F - chr3L_9_1355001 chr3L_1355001 RAL-377 1608 chr3L 1372346 1372373 chr3L 1372444 1372471 7 98 4.5 5.5 5.0 1.2 125 chr3L 1372346 intron,intron Ptp61F -,ru + chr3L 1372408 intron,intron Ptp61F -,ru + chr3L 1372471 intron,intron Ptp61F -,ru + chr3L_7_1370001 chr3L_1370001 RAL-377 1609 chr3L 1415767 1415807 chr3L 1415868 1415875 6 92 0.5 3.0 1.8 2.1 108 chr3L 1415767 intron Ptp61F - chr3L 1415821 intron Ptp61F - chr3L 1415875 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-377 1610 chr3L 1477369 1477396 chr3L 1477479 1477506 8 110 5.5 0.0 2.8 2.1 137 chr3L 1477369 intron stet - chr3L 1477438 intron stet - chr3L 1477506 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-377 1611 chr3L 1480985 1481027 chr3L 1481076 1481117 7 95 2.5 2.5 2.5 2.0 132 chr3L 1480985 intron stet - chr3L 1481051 intron stet - chr3L 1481117 intron stet - chr3L_7_1480001 chr3L_1480001 RAL-377 1612 chr3L 1501977 1502018 chr3L 1502078 1502119 7 101 0.5 1.5 1.0 3.5 142 chr3L 1501977 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502119 intron pUf68 - chr3L_7_1500001 chr3L_1500001 RAL-377 1613 chr3L 1505980 1506032 chr3L 1513597 1513649 17.6 23 7615 5.0 4.0 4.5 4.2 7669 chr3L 1505980 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513649 intron,intron Psa +,cue - chr3L_23_1505001 chr3L_1505001 RAL-377 1614 chr3L 1536837 1536882 chr3L 1536941 1536986 9 104 4.5 4.0 4.2 1.7 149 chr3L 1536837 intergenic CG12091 -,CG7852 + chr3L 1536912 intergenic CG12091 -,CG7852 + chr3L 1536986 intergenic CG7852 +,CG12091 - chr3L_9_1535001 chr3L_1535001 RAL-377 1615 chr3L 1585916 1585936 chr3L 1586017 1586032 6 100 2.0 0.0 1.0 3.0 116 chr3L 1585916 intron CG13917 + chr3L 1585974 intron CG13917 + chr3L 1586032 intron CG13917 + chr3L_6_1585001 chr3L_1585001 RAL-377 1616 chr3L 1639194 1639233 chr3L 1639395 1639434 10 199 3.0 4.5 3.8 2.1 240 chr3L 1639194 5` UTR metl - chr3L 1639314 intergenic metl -,Bgb + chr3L 1639434 intergenic metl -,Bgb + chr3L_10_1635001 chr3L_1635001 RAL-377 1617 chr3L 1728501 1728550 chr3L 1728601 1728655 13 102 6.0 2.5 4.2 2.5 154 chr3L 1728501 intron drpr - chr3L 1728578 intron drpr - chr3L 1728655 intron drpr - chr3L_13_1725001 chr3L_1725001 RAL-377 1618 chr3L 1740836 1740883 chr3L 1741099 1741145 pogo 18 258 5.5 5.5 5.5 2.8 309 chr3L 1740836 intron Gk + chr3L 1740990 intron Gk + chr3L 1741145 intron Gk + chr3L_18_1740001 chr3L_1740001 RAL-377 1619 chr3L 1805682 1805690 chr3L 1805876 1805884 5 194 4.0 2.0 3.0 1.2 202 chr3L 1805682 exon CG42676 + chr3L 1805783 intron CG42676 + chr3L 1805884 intron CG42676 + chr3L_5_1805001 chr3L_1805001 RAL-377 1620 chr3L 1805691 1805705 chr3L 1805874 1805899 8 190 3.0 2.0 2.5 2.3 208 chr3L 1805691 exon CG42676 + chr3L 1805795 intron CG42676 + chr3L 1805899 intron CG42676 + chr3L_8_1805001 chr3L_1805001 RAL-377 1621 chr3L 1841556 1841567 chr3L 1841661 1841672 8 105 7.0 3.5 5.2 1.3 116 chr3L 1841556 intron Cpr62Bc - chr3L 1841614 intron Cpr62Bc - chr3L 1841672 intron Cpr62Bc - chr3L_8_1840001 chr3L_1840001 RAL-377 1622 chr3L 1882372 1882373 chr3L 1882486 1882487 4 114 6.5 4.5 5.5 0.6 115 chr3L 1882372 intron CG13937 - chr3L 1882430 intron CG13937 - chr3L 1882487 intron CG13937 - chr3L_4_1880001 chr3L_1880001 RAL-377 1623 chr3L 1882374 1882381 chr3L 1882482 1882495 4 112 4.5 3.5 4.0 0.8 121 chr3L 1882374 intron CG13937 - chr3L 1882434 intron CG13937 - chr3L 1882495 intron CG13937 - chr3L_4_1880001 chr3L_1880001 RAL-377 1624 chr3L 1885162 1885186 chr3L 1885262 1885286 11 99 0.0 8.5 4.2 2.1 124 chr3L 1885162 intergenic Aprt -,Tmhs + chr3L 1885224 intergenic Aprt -,Tmhs + chr3L 1885286 intergenic Aprt -,Tmhs + chr3L_11_1885001 chr3L_1885001 RAL-377 1625 chr3L 1905321 1905369 chr3L 1905434 1905483 17 113 4.0 3.5 3.8 3.5 162 chr3L 1905321 intron CG1887 - chr3L 1905402 intron CG1887 - chr3L 1905483 intron CG1887 - chr3L_17_1905001 chr3L_1905001 RAL-377 1626 chr3L 1922425 1922440 chr3L 1922525 1922531 6 96 4.5 4.5 4.5 1.1 106 chr3L 1922425 intron Dbx + chr3L 1922478 intron Dbx + chr3L 1922531 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-377 1627 chr3L 1991123 1991148 chr3L 1991221 1991245 9 97 5.5 0.0 2.8 2.4 122 chr3L 1991123 intergenic not near genes chr3L 1991184 intergenic not near genes chr3L 1991245 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-377 1628 chr3L 1995597 1995613 chr3L 1997112 1997118 4 1508 16.5 0.0 8.2 0.4 1521 chr3L 1995597 intergenic not near genes chr3L 1996358 intergenic not near genes chr3L 1997118 intergenic not near genes chr3L_4_1995001 chr3L_1995001 RAL-377 1629 chr3L 2006466 2006502 chr3L 2006566 2006599 8 99 3.0 5.5 4.2 1.5 133 chr3L 2006466 intergenic not near genes chr3L 2006532 intergenic not near genes chr3L 2006599 intergenic not near genes chr3L_8_2005001 chr3L_2005001 RAL-377 1630 chr3L 2016817 2016839 chr3L 2016923 2016945 10 106 8.0 7.0 7.5 1.2 128 chr3L 2016817 intergenic not near genes chr3L 2016881 intergenic not near genes chr3L 2016945 intergenic not near genes chr3L_10_2015001 chr3L_2015001 RAL-377 1631 chr3L 2016842 2016866 chr3L 2016918 2016972 9 103 3.5 7.0 5.2 1.5 130 chr3L 2016842 intergenic not near genes chr3L 2016907 intergenic not near genes chr3L 2016972 intergenic not near genes chr3L_9_2015001 chr3L_2015001 RAL-377 1632 chr3L 2035248 2035302 chr3L 2035344 2035403 11 94 3.5 0.0 1.8 3.9 155 chr3L 2035248 intergenic not near genes chr3L 2035326 intergenic not near genes chr3L 2035403 intergenic not near genes chr3L_11_2035001 chr3L_2035001 RAL-377 1633 chr3L 2108236 2108283 chr3L 2113460 2113507 copia 18 5224 5.5 9.5 7.5 2.1 5271 chr3L 2108236 intron sls - chr3L 2110872 intron sls - chr3L 2113507 intron sls - chr3L_18_2110001 chr3L_2110001 RAL-377 1634 chr3L 2139197 2139228 chr3L 2139298 2139329 11 101 3.0 5.0 4.0 2.2 132 chr3L 2139197 intron zormin - chr3L 2139263 intron zormin - chr3L 2139329 intron zormin - chr3L_11_2135001 chr3L_2135001 RAL-377 1635 chr3L 2282970 2283020 chr3L 2283066 2283111 16 96 2.5 6.5 4.5 2.9 141 chr3L 2282970 5` UTR MsR2 + chr3L 2283040 5` UTR MsR2 + chr3L 2283111 5` UTR MsR2 + chr3L_16_2280001 chr3L_2280001 RAL-377 1636 chr3L 2295638 2295651 chr3L 2295743 2295755 4 105 7.5 3.5 5.5 0.6 117 chr3L 2295638 intron MsR2 + chr3L 2295696 intron MsR2 + chr3L 2295755 intron MsR2 + chr3L_4_2295001 chr3L_2295001 RAL-377 1637 chr3L 2295652 2295685 chr3L 2295737 2295790 9 101 6.0 3.5 4.8 1.6 138 chr3L 2295652 intron MsR2 + chr3L 2295721 intron MsR2 + chr3L 2295790 intron MsR2 + chr3L_9_2295001 chr3L_2295001 RAL-377 1638 chr3L 2300799 2300820 chr3L 2300905 2300926 7 106 1.5 0.5 1.0 3.5 127 chr3L 2300799 3` UTR MsR2 + chr3L 2300862 3` UTR MsR2 + chr3L 2300926 3` UTR MsR2 + chr3L_7_2300001 chr3L_2300001 RAL-377 1639 chr3L 2302894 2302944 chr3L 2302994 2303040 24 99 4.5 2.5 3.5 5.3 146 chr3L 2302894 intergenic not near genes chr3L 2302967 intergenic not near genes chr3L 2303040 intergenic not near genes chr3L_24_2300001 chr3L_2300001 RAL-377 1640 chr3L 2307986 2308036 chr3L 2308112 2308162 11 124 3.5 3.5 3.5 2.4 176 chr3L 2307986 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308162 intergenic not near genes chr3L_11_2305001 chr3L_2305001 RAL-377 1641 chr3L 2332982 2333009 chr3L 2333251 2333299 9 284 4.0 4.0 4.0 1.8 317 chr3L 2332982 intron MsR1 + chr3L 2333140 intron MsR1 + chr3L 2333299 intron MsR1 + chr3L_9_2330001 chr3L_2330001 RAL-377 1642 chr3L 2447495 2447526 chr3L 2456665 2456702 roo 7 9173 2.5 7.5 5.0 1.2 9207 chr3L 2447495 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456702 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-377 1643 chr3L 2459133 2459168 chr3L 2459314 2459349 7 181 3.5 6.0 4.8 1.2 216 chr3L 2459133 intron CG45186 + chr3L 2459241 intron CG45186 + chr3L 2459349 intron CG45186 + chr3L_7_2455001 chr3L_2455001 RAL-377 1644 chr3L 2467432 2467484 chr3L 2467549 2467601 6 117 2.0 0.0 1.0 3.0 169 chr3L 2467432 intron CG45186 + chr3L 2467516 intron CG45186 + chr3L 2467601 intron CG45186 + chr3L_6_2465001 chr3L_2465001 RAL-377 1645 chr3L 2493803 2493849 chr3L 2493901 2493957 15 103 4.5 0.0 2.2 4.7 154 chr3L 2493803 intron CG45186 + chr3L 2493880 intron CG45186 + chr3L 2493957 intron CG45186 + chr3L_15_2490001 chr3L_2490001 RAL-377 1646 chr3L 2548237 2548288 chr3L 2548346 2548381 14 106 4.0 6.0 5.0 2.3 144 chr3L 2548237 intron Spn - chr3L 2548309 intron Spn - chr3L 2548381 intron Spn - chr3L_14_2545001 chr3L_2545001 RAL-377 1647 chr3L 2683929 2683973 chr3L 2684022 2684069 14 96 6.5 6.0 6.2 1.9 140 chr3L 2683929 intron Fife - chr3L 2683999 intron Fife - chr3L 2684069 intron Fife - chr3L_14_2680001 chr3L_2680001 RAL-377 1648 chr3L 2827196 2827215 chr3L 2827275 2827300 6 90 2.5 2.5 2.5 1.7 104 chr3L 2827196 intron CG43444 - chr3L 2827248 intron CG43444 - chr3L 2827300 intron CG43444 - chr3L_6_2825001 chr3L_2825001 RAL-377 1649 chr3L 2882094 2882144 chr3L 2882190 2882240 15 96 3.0 3.0 3.0 3.8 146 chr3L 2882094 intergenic not near genes chr3L 2882167 intergenic not near genes chr3L 2882240 intergenic not near genes chr3L_15_2880001 chr3L_2880001 RAL-377 1650 chr3L 2895869 2895885 chr3L 2895972 2895988 4 101 8.0 1.5 4.8 0.7 119 chr3L 2895869 intron Shab + chr3L 2895928 intron Shab + chr3L 2895988 intron Shab + chr3L_4_2895001 chr3L_2895001 RAL-377 1651 chr3L 2917831 2917886 chr3L 2918113 2918165 13 279 2.5 4.0 3.2 3.1 334 chr3L 2917831 intron Shab + chr3L 2917998 intron Shab + chr3L 2918165 intron Shab + chr3L_13_2915001 chr3L_2915001 RAL-377 1652 chr3L 2927822 2927868 chr3L 2936118 2936165 Tirant 13 8296 3.5 4.0 3.8 2.7 8343 chr3L 2927822 intron Shab + chr3L 2931994 intron Shab + chr3L 2936165 intron Shab + chr3L_13_2930001 chr3L_2930001 RAL-377 1653 chr3L 2966710 2966724 chr3L 2974155 2974169 mdg1 6 7445 7.0 6.0 6.5 0.8 7459 chr3L 2966710 intergenic not near genes chr3L 2970440 intergenic not near genes chr3L 2974169 intergenic not near genes chr3L_6_2970001 chr3L_2970001 RAL-377 1654 chr3L 2987715 2987735 chr3L 2987993 2988014 8 279 6.5 4.5 5.5 1.2 299 chr3L 2987715 intergenic not near genes chr3L 2987864 intergenic not near genes chr3L 2988014 intergenic not near genes chr3L_8_2985001 chr3L_2985001 RAL-377 1655 chr3L 2987736 2987747 chr3L 2987992 2988029 7 278 4.5 4.0 4.2 1.3 293 chr3L 2987736 intergenic not near genes chr3L 2987882 intergenic not near genes chr3L 2988029 intergenic not near genes chr3L_7_2985001 chr3L_2985001 RAL-377 1656 chr3L 3028333 3028371 chr3L 3028432 3028470 12 96 2.0 1.5 1.8 4.3 137 chr3L 3028333 intergenic not near genes chr3L 3028402 intergenic not near genes chr3L 3028470 intergenic not near genes chr3L_12_3025001 chr3L_3025001 RAL-377 1657 chr3L 3030956 3030966 chr3L 3031056 3031066 7 99 2.0 1.0 1.5 2.8 110 chr3L 3030956 intergenic not near genes chr3L 3031011 intergenic not near genes chr3L 3031066 intergenic not near genes chr3L_7_3030001 chr3L_3030001 RAL-377 1658 chr3L 3040317 3040327 chr3L 3042126 3042136 S-element 4 1809 10.5 5.5 8.0 0.4 1819 chr3L 3040317 3` UTR CG2162 + chr3L 3041226 intergenic not near genes chr3L 3042136 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-377 1659 chr3L 3040330 3040356 chr3L 3042123 3042165 S-element 11 1807 5.0 5.5 5.2 1.8 1835 chr3L 3040330 3` UTR CG2162 + chr3L 3041248 intergenic not near genes chr3L 3042165 intergenic Jafrac2 + chr3L_11_3040001 chr3L_3040001 RAL-377 1660 chr3L 3051729 3051754 chr3L 3051987 3052012 pogo 5 258 6.0 1.0 3.5 1.1 283 chr3L 3051729 3` UTR CG32485 + chr3L 3051870 intergenic CG32485 + chr3L 3052012 intergenic CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-377 1661 chr3L 3061275 3061316 chr3L 3069867 3069912 Tirant 5 8599 0.0 3.5 1.8 1.8 8637 chr3L 3061275 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069912 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-377 1662 chr3L 3141033 3141052 chr3L 3141126 3141143 4 97 1.5 2.5 2.0 1.3 110 chr3L 3141033 intron CG11537 - chr3L 3141088 intron CG11537 - chr3L 3141143 intron CG11537 - chr3L_4_3140001 chr3L_3140001 RAL-377 1663 chr3L 3244352 3244376 chr3L 3244448 3244470 5 94 6.0 5.0 5.5 0.8 118 chr3L 3244352 intergenic CG12078 - chr3L 3244411 intergenic CG12078 -,CR45424 + chr3L 3244470 intergenic CG12078 -,CR45424 + chr3L_5_3240001 chr3L_3240001 RAL-377 1664 chr3L 3254071 3254115 chr3L 3254182 3254226 6 110 2.0 3.0 2.5 1.7 155 chr3L 3254071 5` UTR CR43626 + chr3L 3254148 5` UTR CR43626 + chr3L 3254226 5` UTR CR43626 + chr3L_6_3250001 chr3L_3250001 RAL-377 1665 chr3L 3259822 3259832 chr3L 3259942 3259952 4 120 2.0 12.5 7.2 0.5 130 chr3L 3259822 intron ckd + chr3L 3259887 intron ckd + chr3L 3259952 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-377 1666 chr3L 3269088 3269127 chr3L 3269199 3269238 10 109 0.0 3.5 1.8 3.6 150 chr3L 3269088 intergenic CG34265 + chr3L 3269163 intergenic CG34265 + chr3L 3269238 intergenic CG34265 + chr3L_10_3265001 chr3L_3265001 RAL-377 1667 chr3L 3281440 3281472 chr3L 3281936 3281988 Doc 19 509 1.5 3.5 2.5 5.4 548 chr3L 3281440 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281988 intron CG12017 + chr3L_19_3280001 chr3L_3280001 RAL-377 1668 chr3L 3304368 3304396 chr3L 3304629 3304680 10 281 5.0 5.0 5.0 1.7 312 chr3L 3304368 intron ZnT63C + chr3L 3304524 intron ZnT63C + chr3L 3304680 intron ZnT63C + chr3L_10_3300001 chr3L_3300001 RAL-377 1669 chr3L 3314118 3314170 chr3L 3314272 3314306 11 150 3.0 4.0 3.5 2.4 188 chr3L 3314118 intergenic ZnT63C +,Drsl2 + chr3L 3314212 intergenic Drsl2 +,ZnT63C + chr3L 3314306 intergenic Drsl2 +,ZnT63C + chr3L_11_3310001 chr3L_3310001 RAL-377 1670 chr3L 3317512 3317565 chr3L 3317611 3317664 20 99 0.5 4.5 2.5 5.7 152 chr3L 3317512 intergenic Drsl5 + chr3L 3317588 intergenic PIG-C -,Drsl5 + chr3L 3317664 intergenic PIG-C - chr3L_20_3315001 chr3L_3315001 RAL-377 1671 chr3L 3436291 3436311 chr3L 3436390 3436410 8 99 5.0 9.5 7.2 1.0 119 chr3L 3436291 intron eIF5B - chr3L 3436350 intron eIF5B - chr3L 3436410 intron eIF5B - chr3L_8_3435001 chr3L_3435001 RAL-377 1672 chr3L 3475071 3475099 chr3L 3475525 3475561 jockey 6 462 2.0 3.0 2.5 1.7 490 chr3L 3475071 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475561 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-377 1673 chr3L 3491607 3491658 chr3L 3491711 3491757 10 96 2.5 0.5 1.5 4.0 150 chr3L 3491607 intron CG42324 + chr3L 3491682 intron CG42324 + chr3L 3491757 intron CG42324 + chr3L_10_3490001 chr3L_3490001 RAL-377 1674 chr3L 3494179 3494205 chr3L 3494276 3494302 11 96 2.5 3.0 2.8 2.9 123 chr3L 3494179 intron CG42324 + chr3L 3494240 intron CG42324 + chr3L 3494302 intron CG42324 + chr3L_11_3490001 chr3L_3490001 RAL-377 1675 chr3L 3517991 3518018 chr3L 3518093 3518119 4 99 6.0 1.5 3.8 0.8 128 chr3L 3517991 intron Eip63E + chr3L 3518055 intron Eip63E + chr3L 3518119 intron Eip63E + chr3L_4_3515001 chr3L_3515001 RAL-377 1676 chr3L 3544387 3544401 chr3L 3544515 3544531 8 130 0.0 5.0 2.5 2.3 144 chr3L 3544387 intron Eip63E + chr3L 3544459 intron Eip63E + chr3L 3544531 intron Eip63E + chr3L_8_3540001 chr3L_3540001 RAL-377 1677 chr3L 3544404 3544412 chr3L 3544502 3544532 4 119 0.0 3.0 1.5 1.6 128 chr3L 3544404 intron Eip63E + chr3L 3544468 intron Eip63E + chr3L 3544532 intron Eip63E + chr3L_4_3540001 chr3L_3540001 RAL-377 1678 chr3L 3565917 3565968 chr3L 3566013 3566053 10 90 2.5 0.0 1.2 4.5 136 chr3L 3565917 intron Eip63E + chr3L 3565985 intron Eip63E + chr3L 3566053 intron Eip63E + chr3L_10_3565001 chr3L_3565001 RAL-377 1679 chr3L 3577722 3577764 chr3L 3577820 3577862 15 98 2.0 5.0 3.5 3.3 140 chr3L 3577722 intron Eip63E + chr3L 3577792 intron Eip63E + chr3L 3577862 intron Eip63E + chr3L_15_3575001 chr3L_3575001 RAL-377 1680 chr3L 3601282 3601329 chr3L 3606613 3606660 copia 13 5329 5.0 5.0 5.0 2.2 5378 chr3L 3601282 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606660 intron Eip63E + chr3L_13_3600001 chr3L_3600001 RAL-377 1681 chr3L 3619384 3619433 chr3L 3619498 3619547 19 114 4.0 6.0 5.0 3.2 163 chr3L 3619384 intergenic not near genes chr3L 3619466 intergenic not near genes chr3L 3619547 intergenic not near genes chr3L_19_3615001 chr3L_3615001 RAL-377 1682 chr3L 3627174 3627215 chr3L 3627278 3627318 12 103 2.5 1.5 2.0 4.0 144 chr3L 3627174 intron dar1 + chr3L 3627246 intron dar1 + chr3L 3627318 intron dar1 + chr3L_12_3625001 chr3L_3625001 RAL-377 1683 chr3L 3720951 3720977 chr3L 3721053 3721079 6 100 7.0 5.5 6.2 0.8 128 chr3L 3720951 intron CG32264 - chr3L 3721015 intron CG32264 - chr3L 3721079 intron CG32264 - chr3L_6_3720001 chr3L_3720001 RAL-377 1684 chr3L 3751518 3751533 chr3L 3751627 3751642 5 109 7.5 6.0 6.8 0.6 124 chr3L 3751518 intron CG32264 - chr3L 3751580 intron CG32264 - chr3L 3751642 intron CG32264 - chr3L_5_3750001 chr3L_3750001 RAL-377 1685 chr3L 3763740 3763755 chr3L 3763841 3763856 5 99 3.0 0.0 1.5 2.0 116 chr3L 3763740 intron CG32264 - chr3L 3763798 intron CG32264 - chr3L 3763856 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-377 1686 chr3L 3766718 3766738 chr3L 3766824 3766844 8 106 2.0 0.0 1.0 4.0 126 chr3L 3766718 intron CG32264 - chr3L 3766781 intron CG32264 - chr3L 3766844 intron CG32264 - chr3L_8_3765001 chr3L_3765001 RAL-377 1687 chr3L 3793005 3793060 chr3L 3793165 3793220 11 153 2.0 0.0 1.0 5.5 215 chr3L 3793005 intron CG32264 - chr3L 3793112 intron CG32264 - chr3L 3793220 intron CG32264 - chr3L_11_3790001 chr3L_3790001 RAL-377 1688 chr3L 3797223 3797257 chr3L 3797326 3797360 9 102 0.0 3.0 1.5 3.6 137 chr3L 3797223 intron CG32264 - chr3L 3797292 intron CG32264 - chr3L 3797360 intron CG32264 - chr3L_9_3795001 chr3L_3795001 RAL-377 1689 chr3L 3815032 3815078 chr3L 3815133 3815177 19 99 7.0 4.0 5.5 2.9 145 chr3L 3815032 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815104 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815177 intron,intron Scsalpha +,CR43932 - chr3L_19_3815001 chr3L_3815001 RAL-377 1690 chr3L 3833718 3833751 chr3L 3833979 3834012 pogo 16 261 5.5 1.5 3.5 3.6 294 chr3L 3833718 intron enc + chr3L 3833865 intron enc + chr3L 3834012 intron enc + chr3L_16_3830001 chr3L_3830001 RAL-377 1691 chr3L 4015717 4015765 chr3L 4015819 4015868 16 103 3.0 2.5 2.8 4.2 151 chr3L 4015717 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015868 intergenic not near genes chr3L_16_4015001 chr3L_4015001 RAL-377 1692 chr3L 4099466 4099493 chr3L 4099567 4099594 9 101 5.0 5.0 5.0 1.5 128 chr3L 4099466 intron CG14995 - chr3L 4099530 intron CG14995 - chr3L 4099594 intron CG14995 - chr3L_9_4095001 chr3L_4095001 RAL-377 1693 chr3L 4146803 4146837 chr3L 4146905 4146939 10 102 0.0 6.0 3.0 2.5 136 chr3L 4146803 intergenic not near genes chr3L 4146871 intergenic not near genes chr3L 4146939 intergenic not near genes chr3L_10_4145001 chr3L_4145001 RAL-377 1694 chr3L 4207498 4207528 chr3L 4207622 4207652 7 124 0.0 0.0 0.0 7.0 154 chr3L 4207498 intron CG43367 + chr3L 4207575 intron CG43367 + chr3L 4207652 intron CG43367 + chr3L_7_4205001 chr3L_4205001 RAL-377 1695 chr3L 4209815 4209850 chr3L 4209913 4209942 10 97 2.5 6.0 4.2 1.9 127 chr3L 4209815 intron CG43367 + chr3L 4209878 intron CG43367 + chr3L 4209942 intron CG43367 + chr3L_10_4205001 chr3L_4205001 RAL-377 1696 chr3L 4238725 4238748 chr3L 4238846 4238869 7 121 0.0 0.0 0.0 7.0 144 chr3L 4238725 intergenic not near genes chr3L 4238797 intergenic not near genes chr3L 4238869 intergenic not near genes chr3L_7_4235001 chr3L_4235001 RAL-377 1697 chr3L 4256906 4256952 chr3L 4260210 4260254 12 3303 33.0 21.5 27.2 0.4 3348 chr3L 4256906 exon CG15011 - chr3L 4258580 exon CG15011 - chr3L 4260254 exon CG1309 + chr3L_12_4255001 chr3L_4255001 RAL-377 1698 chr3L 4308979 4309000 chr3L 4309139 4309160 7 156 5.0 7.0 6.0 1.0 181 chr3L 4308979 intergenic not near genes chr3L 4309070 intergenic not near genes chr3L 4309160 intergenic not near genes chr3L_7_4305001 chr3L_4305001 RAL-377 1699 chr3L 4328733 4328760 chr3L 4336249 4336277 412 5 7516 4.0 4.0 4.0 1.0 7544 chr3L 4328733 intron Cip4 - chr3L 4332505 intron Cip4 - chr3L 4336277 exon Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-377 1700 chr3L 4341330 4341335 chr3L 21448026 21448026 9 17106694 19.5 14.0 16.8 0.5 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_9_12890001 chr3L_12890001 RAL-377 1701 chr3L 4342406 4342430 chr3L 4342490 4342527 4 94 6.0 5.5 5.8 0.6 121 chr3L 4342406 intron Cip4 - chr3L 4342466 intron Cip4 - chr3L 4342527 intron Cip4 - chr3L_4_4340001 chr3L_4340001 RAL-377 1702 chr3L 4344896 4345067 chr3L 4344998 4345163 6 97 0.0 0.0 0.0 6.0 267 chr3L 4344896 intron Cip4 - chr3L 4345030 intron Cip4 - chr3L 4345163 intron Cip4 - chr3L_6_4345001 chr3L_4345001 RAL-377 1703 chr3L 4347814 4347858 chr3L 4347920 4347949 21 105 5.5 3.5 4.5 3.8 135 chr3L 4347814 intron Cip4 - chr3L 4347882 intron Cip4 - chr3L 4347949 intron Cip4 - chr3L_21_4345001 chr3L_4345001 RAL-377 1704 chr3L 4364177 4364234 chr3L 4364286 4364343 13 109 2.5 4.0 3.2 3.1 166 chr3L 4364177 intergenic Cip4 -,mRpS6 + chr3L 4364260 intergenic Cip4 -,mRpS6 + chr3L 4364343 intergenic mRpS6 +,Cip4 - chr3L_13_4360001 chr3L_4360001 RAL-377 1705 chr3L 4484721 4484750 chr3L 4484819 4484848 10 96 2.5 7.5 5.0 1.7 127 chr3L 4484721 intergenic CG11350 +,CG13722 - chr3L 4484784 intergenic CG13722 -,CG11350 + chr3L 4484848 intergenic CG13722 -,CG11350 + chr3L_10_4480001 chr3L_4480001 RAL-377 1706 chr3L 4491364 4491412 chr3L 4491477 4491525 15 113 3.5 0.0 1.8 5.4 161 chr3L 4491364 intergenic CG13722 - chr3L 4491444 intergenic CG13722 - chr3L 4491525 intergenic not near genes chr3L_15_4490001 chr3L_4490001 RAL-377 1707 chr3L 4516817 4516860 chr3L 4516914 4516957 22 97 4.5 5.5 5.0 3.7 140 chr3L 4516817 intron Tie - chr3L 4516887 intron Tie - chr3L 4516957 intron Tie - chr3L_22_4515001 chr3L_4515001 RAL-377 1708 chr3L 4522699 4522707 chr3L 4522798 4522806 5 99 4.5 2.5 3.5 1.1 107 chr3L 4522699 intron Tie - chr3L 4522752 intron Tie - chr3L 4522806 intron Tie - chr3L_5_4520001 chr3L_4520001 RAL-377 1709 chr3L 4522708 4522724 chr3L 4522792 4522823 5 95 2.5 2.0 2.2 1.6 115 chr3L 4522708 intron Tie - chr3L 4522766 intron Tie - chr3L 4522823 intron Tie - chr3L_5_4520001 chr3L_4520001 RAL-377 1710 chr3L 4676016 4676048 chr3L 4676117 4676149 11 101 3.0 0.0 1.5 4.4 133 chr3L 4676016 intron axo - chr3L 4676082 intron axo - chr3L 4676149 intron axo - chr3L_11_4675001 chr3L_4675001 RAL-377 1711 chr3L 4699281 4699314 chr3L 4699380 4699414 6 100 4.0 5.5 4.8 1.0 133 chr3L 4699281 intron RhoGEF64C + chr3L 4699348 intron RhoGEF64C + chr3L 4699414 intron RhoGEF64C + chr3L_6_4695001 chr3L_4695001 RAL-377 1712 chr3L 4732677 4732732 chr3L 4735812 4735867 17 3134 5.0 1.5 3.2 4.0 3190 chr3L 4732677 intron RhoGEF64C + chr3L 4734272 intron RhoGEF64C + chr3L 4735867 intron RhoGEF64C + chr3L_17_4730001 chr3L_4730001 RAL-377 1713 chr3L 4748695 4748729 chr3L 4748793 4748839 5 106 2.5 1.0 1.8 1.8 144 chr3L 4748695 intron RhoGEF64C + chr3L 4748767 intron RhoGEF64C + chr3L 4748839 intron RhoGEF64C + chr3L_5_4745001 chr3L_4745001 RAL-377 1714 chr3L 4784949 4784982 chr3L 4785172 4785211 8 227 1.0 5.0 3.0 2.0 262 chr3L 4784949 intron RhoGEF64C + chr3L 4785080 intron RhoGEF64C + chr3L 4785211 intron RhoGEF64C + chr3L_8_4785001 chr3L_4785001 RAL-377 1715 chr3L 4858305 4858335 chr3L 4858404 4858445 7 102 4.0 4.5 4.2 1.3 140 chr3L 4858305 intergenic not near genes chr3L 4858375 intergenic not near genes chr3L 4858445 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-377 1716 chr3L 4901115 4901153 chr3L 4907325 4907338 diver 12 6206 7.0 6.0 6.5 1.6 6223 chr3L 4901115 intergenic CG13704 + chr3L 4904226 intergenic not near genes chr3L 4907338 intergenic not near genes chr3L_12_4900001 chr3L_4900001 RAL-377 1717 chr3L 4989179 4989192 chr3L 4989289 4989302 5 110 0.0 0.5 0.2 4.2 123 chr3L 4989179 intron Con - chr3L 4989240 intron Con - chr3L 4989302 intron Con - chr3L_5_4985001 chr3L_4985001 RAL-377 1718 chr3L 4991371 4991417 chr3L 4991515 4991561 14 144 4.0 5.5 4.8 2.4 190 chr3L 4991371 intron Con - chr3L 4991466 intron Con - chr3L 4991561 intron Con - chr3L_14_4990001 chr3L_4990001 RAL-377 1719 chr3L 5003119 5003168 chr3L 5003225 5003269 17 105 2.5 5.5 4.0 3.4 150 chr3L 5003119 intron Con - chr3L 5003194 intron Con - chr3L 5003269 intron Con - chr3L_17_5000001 chr3L_5000001 RAL-377 1720 chr3L 5034139 5034190 chr3L 5043311 5043362 roo 16 9168 2.5 4.5 3.5 3.6 9223 chr3L 5034139 intron Con - chr3L 5038750 intron Con - chr3L 5043362 intron Con - chr3L_16_5035001 chr3L_5035001 RAL-377 1721 chr3L 5045448 5045485 chr3L 5050249 5050286 Doc 15 4800 6.0 5.5 5.8 2.2 4838 chr3L 5045448 intron Con - chr3L 5047867 intron Con - chr3L 5050286 intron Con - chr3L_15_5045001 chr3L_5045001 RAL-377 1722 chr3L 5101179 5101230 chr3L 5101278 5101330 17 99 3.5 4.5 4.0 3.4 151 chr3L 5101179 intergenic not near genes chr3L 5101254 intergenic not near genes chr3L 5101330 intergenic not near genes chr3L_17_5100001 chr3L_5100001 RAL-377 1723 chr3L 5103597 5103613 chr3L 5103695 5103713 5 100 8.5 0.0 4.2 1.0 116 chr3L 5103597 intergenic not near genes chr3L 5103655 intergenic not near genes chr3L 5103713 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-377 1724 chr3L 5104465 5104510 chr3L 5124619 5124664 16 20154 5.0 1.5 3.2 3.8 20199 chr3L 5104465 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124664 intergenic not near genes chr3L_16_5110001 chr3L_5110001 RAL-377 1725 chr3L 5203079 5203116 chr3L 5203203 5203240 20 124 3.0 5.0 4.0 4.0 161 chr3L 5203079 intron shep - chr3L 5203160 intron shep - chr3L 5203240 intron shep - chr3L_20_5200001 chr3L_5200001 RAL-377 1726 chr3L 5223428 5223448 chr3L 5223503 5223550 4 90 2.5 1.5 2.0 1.3 122 chr3L 5223428 intron shep - chr3L 5223489 intron shep - chr3L 5223550 intron shep - chr3L_4_5220001 chr3L_5220001 RAL-377 1727 chr3L 5251848 5251867 chr3L 5251947 5251966 5 99 0.5 7.5 4.0 1.0 118 chr3L 5251848 intron shep - chr3L 5251907 intron shep - chr3L 5251966 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-377 1728 chr3L 5261147 5261172 chr3L 5261246 5261271 12 99 4.5 4.5 4.5 2.2 124 chr3L 5261147 intron shep - chr3L 5261209 intron shep - chr3L 5261271 intron shep - chr3L_12_5260001 chr3L_5260001 RAL-377 1729 chr3L 5280117 5280159 chr3L 5280279 5280328 4 167 0.0 0.5 0.2 3.3 211 chr3L 5280117 intergenic not near genes chr3L 5280222 intergenic not near genes chr3L 5280328 intergenic not near genes chr3L_4_5280001 chr3L_5280001 RAL-377 1730 chr3L 5299155 5299172 chr3L 5306601 5306617 Quasimodo 5 7446 3.0 0.0 1.5 2.0 7462 chr3L 5299155 intergenic not near genes chr3L 5302886 intergenic not near genes chr3L 5306617 intergenic not near genes chr3L_5_5300001 chr3L_5300001 RAL-377 1731 chr3L 5306654 5306668 chr3L 5306764 5306778 7 110 0.0 2.5 1.2 3.2 124 chr3L 5306654 intergenic not near genes chr3L 5306716 intergenic not near genes chr3L 5306778 intergenic not near genes chr3L_7_5305001 chr3L_5305001 RAL-377 1732 chr3L 5376020 5376043 chr3L 5376118 5376122 9 95 3.5 4.0 3.8 1.9 102 chr3L 5376020 intergenic not near genes chr3L 5376071 intergenic not near genes chr3L 5376122 intergenic not near genes chr3L_9_5375001 chr3L_5375001 RAL-377 1733 chr3L 5377626 5377672 chr3L 5377758 5377804 14 130 3.0 6.5 4.8 2.4 178 chr3L 5377626 intergenic CR45743 + chr3L 5377715 intergenic CR45743 + chr3L 5377804 intergenic CR45743 + chr3L_14_5375001 chr3L_5375001 RAL-377 1734 chr3L 5396448 5396498 chr3L 5396555 5396605 17 107 5.5 2.0 3.8 3.5 157 chr3L 5396448 intergenic not near genes chr3L 5396526 intergenic not near genes chr3L 5396605 intergenic not near genes chr3L_17_5395001 chr3L_5395001 RAL-377 1735 chr3L 5408515 5408526 chr3L 5408614 5408625 7 99 11.0 4.0 7.5 0.8 110 chr3L 5408515 intergenic not near genes chr3L 5408570 intergenic not near genes chr3L 5408625 intergenic not near genes chr3L_7_5405001 chr3L_5405001 RAL-377 1736 chr3L 5449514 5449564 chr3L 5449613 5449662 15 98 5.0 1.0 3.0 3.8 148 chr3L 5449514 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449662 intergenic not near genes chr3L_15_5445001 chr3L_5445001 RAL-377 1737 chr3L 5502135 5502188 chr3L 5502231 5502274 6 92 3.0 4.0 3.5 1.3 139 chr3L 5502135 intergenic not near genes chr3L 5502204 intergenic not near genes chr3L 5502274 intergenic not near genes chr3L_6_5500001 chr3L_5500001 RAL-377 1738 chr3L 5504539 5504566 chr3L 5504637 5504664 11 98 6.0 0.5 3.2 2.6 125 chr3L 5504539 intron CG34342 - chr3L 5504602 intron CG34342 - chr3L 5504664 intron CG34342 - chr3L_11_5500001 chr3L_5500001 RAL-377 1739 chr3L 5597813 5597828 chr3L 5597913 5597928 4 100 6.5 1.5 4.0 0.8 115 chr3L 5597813 intergenic CG5150 + chr3L 5597870 intergenic CG5150 + chr3L 5597928 intergenic not near genes chr3L_4_5595001 chr3L_5595001 RAL-377 1740 chr3L 5666265 5666317 chr3L 5666377 5666421 5 110 0.0 1.5 0.8 2.8 156 chr3L 5666265 intron sif + chr3L 5666343 intron sif + chr3L 5666421 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-377 1741 chr3L 5825911 5825924 chr3L 5825983 5826019 5 89 3.5 5.5 4.5 0.9 108 chr3L 5825911 intron vn - chr3L 5825965 intron vn - chr3L 5826019 intron vn - chr3L_5_5825001 chr3L_5825001 RAL-377 1742 chr3L 5908069 5908102 chr3L 5908163 5908202 10 99 0.0 3.5 1.8 3.6 133 chr3L 5908069 intron CG13288 + chr3L 5908136 intron CG13288 + chr3L 5908202 intron CG13288 + chr3L_10_5905001 chr3L_5905001 RAL-377 1743 chr3L 5910014 5910063 chr3L 5910275 5910324 pogo 24 261 8.5 5.0 6.8 3.1 310 chr3L 5910014 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910324 intron CG13288 + chr3L_24_5910001 chr3L_5910001 RAL-377 1744 chr3L 5918890 5918929 chr3L 5918986 5919013 12 93 6.0 1.0 3.5 2.7 123 chr3L 5918890 exon,5` UTR CG10483 -,CR45167 + chr3L 5918952 intron,5` UTR CG10483 -,CR45167 + chr3L 5919013 intron,5` UTR CG10483 -,CR45167 + chr3L_12_5915001 chr3L_5915001 RAL-377 1745 chr3L 5926299 5926348 chr3L 5926509 5926542 BS 16 203 2.5 5.0 3.8 3.3 243 chr3L 5926299 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926542 intron Vap-33B + chr3L_16_5925001 chr3L_5925001 RAL-377 1746 chr3L 6001664 6001716 chr3L 6004384 6004436 jockey 11 2719 5.5 2.0 3.8 2.3 2772 chr3L 6001664 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004436 intron PVRAP + chr3L_11_6000001 chr3L_6000001 RAL-377 1747 chr3L 6040258 6040294 chr3L 6040353 6040394 12 100 4.0 0.0 2.0 4.0 136 chr3L 6040258 intergenic Jon65Aiv + chr3L 6040326 intergenic Jon65Aiv + chr3L 6040394 intergenic Jon65Aiv + chr3L_12_6040001 chr3L_6040001 RAL-377 1748 chr3L 6040352 6040392 chr3L 6042727 6042768 Doc 12 2375 0.0 5.0 2.5 3.4 2416 chr3L 6040352 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042768 intergenic not near genes chr3L_12_6040001 chr3L_6040001 RAL-377 1749 chr3L 6052139 6052149 chr3L 6052245 6052255 8 105 0.0 6.5 3.2 1.9 116 chr3L 6052139 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052197 intergenic Jon65Aii + chr3L 6052255 intergenic Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-377 1750 chr3L 6052646 6052655 chr3L 6052745 6052760 4 102 2.5 4.0 3.2 1.0 114 chr3L 6052646 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052760 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-377 1751 chr3L 6155674 6155705 chr3L 6155780 6155811 13 106 5.5 5.0 5.2 2.1 137 chr3L 6155674 intergenic CR45421 - chr3L 6155742 intergenic not near genes chr3L 6155811 intergenic not near genes chr3L_13_6155001 chr3L_6155001 RAL-377 1752 chr3L 6165081 6165096 chr3L 6165202 6165208 6 120 7.5 6.5 7.0 0.8 127 chr3L 6165081 3` UTR CG10289 - chr3L 6165144 3` UTR CG10289 - chr3L 6165208 3` UTR CG10289 - chr3L_6_6165001 chr3L_6165001 RAL-377 1753 chr3L 6169109 6169135 chr3L 6169210 6169236 6 101 7.5 8.5 8.0 0.7 127 chr3L 6169109 3` UTR CG10289 - chr3L 6169172 3` UTR CG10289 - chr3L 6169236 3` UTR CG10289 - chr3L_6_6165001 chr3L_6165001 RAL-377 1754 chr3L 6220903 6220917 chr3L 6230074 6230089 roo 9 9172 8.0 7.5 7.8 1.0 9186 chr3L 6220903 5` UTR pncr008:3L + chr3L 6225496 intergenic not near genes chr3L 6230089 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-377 1755 chr3L 6220922 6220938 chr3L 6230067 6230110 roo 5 9167 6.5 5.5 6.0 0.7 9188 chr3L 6220922 5` UTR pncr008:3L + chr3L 6225516 intergenic not near genes chr3L 6230110 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-377 1756 chr3L 6267298 6267349 chr3L 6267406 6267457 19 107 3.0 5.0 4.0 3.8 159 chr3L 6267298 intergenic not near genes chr3L 6267378 intergenic not near genes chr3L 6267457 intergenic not near genes chr3L_19_6265001 chr3L_6265001 RAL-377 1757 chr3L 6278268 6278305 chr3L 6278370 6278407 15 102 4.0 3.5 3.8 3.1 139 chr3L 6278268 intergenic not near genes chr3L 6278338 intergenic not near genes chr3L 6278407 intergenic not near genes chr3L_15_6275001 chr3L_6275001 RAL-377 1758 chr3L 6323745 6323793 chr3L 6323876 6323927 11 133 1.5 7.5 4.5 2.0 182 chr3L 6323745 intergenic not near genes chr3L 6323836 intergenic not near genes chr3L 6323927 intergenic not near genes chr3L_11_6320001 chr3L_6320001 RAL-377 1759 chr3L 6334990 6335037 chr3L 6335479 6335528 297 12 489 3.5 4.5 4.0 2.4 538 chr3L 6334990 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335528 intron CG13300 - chr3L_12_6335001 chr3L_6335001 RAL-377 1760 chr3L 6405640 6405686 chr3L 6432124 6432170 roo 22 26484 5.5 4.0 4.8 3.8 26530 chr3L 6405640 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432170 intron CG42747 + chr3L_22_6415001 chr3L_6415001 RAL-377 1761 chr3L 6524730 6524774 chr3L 6524846 6524886 12 116 3.0 3.0 3.0 3.0 156 chr3L 6524730 intron sfl + chr3L 6524808 intron sfl + chr3L 6524886 intron sfl + chr3L_12_6520001 chr3L_6520001 RAL-377 1762 chr3L 6540251 6540296 chr3L 6540357 6540402 12 106 3.0 4.5 3.8 2.5 151 chr3L 6540251 intron sfl + chr3L 6540326 intron sfl + chr3L 6540402 intron sfl + chr3L_12_6540001 chr3L_6540001 RAL-377 1763 chr3L 6557969 6557995 chr3L 6558069 6558101 9 105 4.0 5.0 4.5 1.6 132 chr3L 6557969 intron CG18769 + chr3L 6558035 intron CG18769 + chr3L 6558101 intron CG18769 + chr3L_9_6555001 chr3L_6555001 RAL-377 1764 chr3L 6562831 6562869 chr3L 6562931 6562969 20 100 6.0 14.5 10.2 1.8 138 chr3L 6562831 intron CG18769 + chr3L 6562900 intron CG18769 + chr3L 6562969 intron CG18769 + chr3L_20_6560001 chr3L_6560001 RAL-377 1765 chr3L 6575540 6575568 chr3L 6575719 6575747 9 179 3.5 8.0 5.8 1.3 207 chr3L 6575540 intron,intron CG18769 +,jv - chr3L 6575644 intron,intron CG18769 +,jv - chr3L 6575747 intron,intron CG18769 +,jv - chr3L_9_6575001 chr3L_6575001 RAL-377 1766 chr3L 6654220 6654244 chr3L 6654489 6654513 5 269 2.5 4.0 3.2 1.2 293 chr3L 6654220 intergenic not near genes chr3L 6654366 intergenic not near genes chr3L 6654513 intergenic not near genes chr3L_5_6650001 chr3L_6650001 RAL-377 1767 chr3L 6752910 6752935 chr3L 6753016 6753041 9 106 3.5 6.0 4.8 1.6 131 chr3L 6752910 intergenic CG8549 +,velo - chr3L 6752976 5` UTR CG8549 + chr3L 6753041 5` UTR CG8549 + chr3L_9_6750001 chr3L_6750001 RAL-377 1768 chr3L 6781103 6781148 chr3L 6783136 6783181 Doc 15 2033 8.5 4.5 6.5 2.0 2078 chr3L 6781103 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783181 intergenic not near genes chr3L_15_6780001 chr3L_6780001 RAL-377 1769 chr3L 6855917 6855934 chr3L 6860721 6860738 Doc 5 4799 2.0 1.0 1.5 2.0 4821 chr3L 6855917 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-377 1770 chr3L 6887502 6887538 chr3L 6895014 6895050 roo 7 7511 4.5 5.0 4.8 1.2 7548 chr3L 6887502 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895050 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-377 1771 chr3L 6907998 6908004 chr3L 6908103 6908107 5 105 11.5 0.0 5.8 0.7 109 chr3L 6907998 intergenic not near genes chr3L 6908052 intergenic not near genes chr3L 6908107 intergenic not near genes chr3L_5_6905001 chr3L_6905001 RAL-377 1772 chr3L 6908005 6908047 chr3L 6908099 6908145 7 97 4.5 0.0 2.2 2.2 140 chr3L 6908005 intergenic not near genes chr3L 6908075 intergenic not near genes chr3L 6908145 intergenic not near genes chr3L_7_6905001 chr3L_6905001 RAL-377 1773 chr3L 6934317 6934350 chr3L 6934448 6934481 11 130 6.0 4.0 5.0 1.8 164 chr3L 6934317 exon CG14820 + chr3L 6934399 intron CG14820 + chr3L 6934481 intron CG14820 + chr3L_11_6930001 chr3L_6930001 RAL-377 1774 chr3L 6974485 6974524 chr3L 6974606 6974645 8 118 2.5 6.0 4.2 1.5 160 chr3L 6974485 intron Galphai - chr3L 6974565 intron Galphai - chr3L 6974645 intron Galphai - chr3L_8_6970001 chr3L_6970001 RAL-377 1775 chr3L 6981929 6981933 chr3L 6982102 6982107 5 173 0.0 1.5 0.8 2.8 178 chr3L 6981929 intergenic not near genes chr3L 6982018 intergenic not near genes chr3L 6982107 intergenic not near genes chr3L_5_6980001 chr3L_6980001 RAL-377 1776 chr3L 7004203 7004254 chr3L 7004313 7004363 24 108 4.5 3.0 3.8 5.0 160 chr3L 7004203 intron Mp + chr3L 7004283 intron Mp + chr3L 7004363 intron Mp + chr3L_24_7000001 chr3L_7000001 RAL-377 1777 chr3L 7022011 7022052 chr3L 7022238 7022278 11 228 0.0 4.5 2.2 3.4 267 chr3L 7022011 intron Mp + chr3L 7022144 intron Mp + chr3L 7022278 intron Mp + chr3L_11_7020001 chr3L_7020001 RAL-377 1778 chr3L 7085153 7085183 chr3L 7085250 7085282 7 100 3.0 2.5 2.8 1.8 129 chr3L 7085153 intergenic not near genes chr3L 7085218 intergenic not near genes chr3L 7085282 intergenic not near genes chr3L_7_7085001 chr3L_7085001 RAL-377 1779 chr3L 7100417 7100461 chr3L 7100524 7100568 14 104 3.5 8.5 6.0 2.0 151 chr3L 7100417 intron form3 + chr3L 7100492 intron form3 + chr3L 7100568 intron form3 + chr3L_14_7100001 chr3L_7100001 RAL-377 1780 chr3L 7104743 7104767 chr3L 7104974 7105005 10 236 2.0 5.0 3.5 2.2 262 chr3L 7104743 intron form3 + chr3L 7104874 intron form3 + chr3L 7105005 intron form3 + chr3L_10_7100001 chr3L_7100001 RAL-377 1781 chr3L 7107312 7107328 chr3L 7107415 7107431 6 103 0.0 2.0 1.0 3.0 119 chr3L 7107312 intron form3 + chr3L 7107372 intron form3 + chr3L 7107431 intron form3 + chr3L_6_7105001 chr3L_7105001 RAL-377 1782 chr3L 7185715 7185753 chr3L 7185916 7185953 9 200 8.5 6.5 7.5 1.1 238 chr3L 7185715 intron Dscam2 - chr3L 7185834 intron Dscam2 - chr3L 7185953 intron Dscam2 - chr3L_9_7185001 chr3L_7185001 RAL-377 1783 chr3L 7187392 7187417 chr3L 7187493 7187519 12 102 0.0 0.0 0.0 12.0 127 chr3L 7187392 intron Dscam2 - chr3L 7187456 intron Dscam2 - chr3L 7187519 intron Dscam2 - chr3L_12_7185001 chr3L_7185001 RAL-377 1784 chr3L 7257512 7257552 chr3L 7257649 7257689 16 137 4.5 6.0 5.2 2.6 177 chr3L 7257512 intron CG14830 - chr3L 7257600 intron CG14830 - chr3L 7257689 intron CG14830 - chr3L_16_7255001 chr3L_7255001 RAL-377 1785 chr3L 7264763 7264897 chr3L 7264879 7265000 10 108 0.0 0.0 0.0 10.0 237 chr3L 7264763 intergenic not near genes chr3L 7264882 intergenic not near genes chr3L 7265000 intergenic not near genes chr3L_10_7260001 chr3L_7260001 RAL-377 1786 chr3L 7285434 7285477 chr3L 7285532 7285574 6 98 3.5 4.0 3.8 1.2 140 chr3L 7285434 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285574 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-377 1787 chr3L 7287710 7287749 chr3L 7288105 7288144 15 393 4.5 4.0 4.2 2.9 434 chr3L 7287710 intron unc-13-4A - chr3L 7287927 intron unc-13-4A - chr3L 7288144 intron unc-13-4A - chr3L_15_7285001 chr3L_7285001 RAL-377 1788 chr3L 7291097 7291139 chr3L 7291206 7291246 10 109 2.0 0.0 1.0 5.0 149 chr3L 7291097 intron unc-13-4A - chr3L 7291172 intron unc-13-4A - chr3L 7291246 intron unc-13-4A - chr3L_10_7290001 chr3L_7290001 RAL-377 1789 chr3L 7377295 7377346 chr3L 7380420 7380438 297 17 3122 3.5 4.5 4.0 3.4 3143 chr3L 7377295 intron SMSr - chr3L 7378866 intron SMSr - chr3L 7380438 intron SMSr - chr3L_17_7375001 chr3L_7375001 RAL-377 1790 chr3L 7460360 7460401 chr3L 7460464 7460505 11 104 0.0 5.5 2.8 2.9 145 chr3L 7460360 intergenic not near genes chr3L 7460432 intergenic not near genes chr3L 7460505 intergenic not near genes chr3L_11_7460001 chr3L_7460001 RAL-377 1791 chr3L 7462971 7462991 chr3L 7463046 7463090 10 96 2.0 4.0 3.0 2.5 119 chr3L 7462971 intergenic not near genes chr3L 7463030 intergenic not near genes chr3L 7463090 intergenic not near genes chr3L_10_7460001 chr3L_7460001 RAL-377 1792 chr3L 7480037 7480072 chr3L 7480146 7480181 11 108 5.0 6.0 5.5 1.7 144 chr3L 7480037 intergenic not near genes chr3L 7480109 intergenic not near genes chr3L 7480181 intergenic not near genes chr3L_11_7480001 chr3L_7480001 RAL-377 1793 chr3L 7488846 7488891 chr3L 7488947 7488968 18 98 3.5 3.0 3.2 4.3 122 chr3L 7488846 intergenic not near genes chr3L 7488907 intergenic not near genes chr3L 7488968 intergenic not near genes chr3L_18_7485001 chr3L_7485001 RAL-377 1794 chr3L 7493022 7493069 chr3L 7493489 7493541 9 471 3.5 4.0 3.8 1.9 519 chr3L 7493022 exon Cyp316a1 + chr3L 7493282 exon Cyp316a1 + chr3L 7493541 intergenic Cyp4d8 -,Cyp316a1 + chr3L_9_7490001 chr3L_7490001 RAL-377 1795 chr3L 7498744 7498775 chr3L 7503542 7503573 F-element 8 4798 4.5 7.5 6.0 1.1 4829 chr3L 7498744 5` UTR CG8539 - chr3L 7501158 intergenic not near genes chr3L 7503573 intergenic not near genes chr3L_8_7500001 chr3L_7500001 RAL-377 1796 chr3L 7505395 7505438 chr3L 7505491 7505534 10 95 2.5 3.5 3.0 2.5 139 chr3L 7505395 intergenic CG7548 - chr3L 7505464 intergenic CG7548 - chr3L 7505534 intergenic CG7548 - chr3L_10_7505001 chr3L_7505001 RAL-377 1797 chr3L 7524131 7524171 chr3L 7524228 7524273 12 100 3.0 0.0 1.5 4.8 142 chr3L 7524131 intron ltl + chr3L 7524202 intron ltl + chr3L 7524273 intron ltl + chr3L_12_7520001 chr3L_7520001 RAL-377 1798 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028207 17.0 9.0 13.0 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 RAL-377 1799 chr3L 7793703 7793736 chr3L 7800775 7800808 297 17 7072 4.5 6.5 5.5 2.6 7105 chr3L 7793703 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800808 intron CG32369 - chr3L_17_7795001 chr3L_7795001 RAL-377 1800 chr3L 7865543 7865564 chr3L 7865703 7865724 10 160 6.5 0.0 3.2 2.4 181 chr3L 7865543 intron Pdp1 - chr3L 7865634 intron Pdp1 - chr3L 7865724 intron Pdp1 - chr3L_10_7865001 chr3L_7865001 RAL-377 1801 chr3L 7886496 7886546 chr3L 7889034 7889084 Stalker4 14 2537 3.5 1.0 2.2 4.4 2588 chr3L 7886496 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889084 intron CG32365 + chr3L_14_7885001 chr3L_7885001 RAL-377 1802 chr3L 7916814 7916856 chr3L 7926005 7926047 roo 11 9191 6.0 3.5 4.8 1.9 9233 chr3L 7916814 3` UTR syd - chr3L 7921430 intron syd - chr3L 7926047 3` UTR syd - chr3L_11_7920001 chr3L_7920001 RAL-377 1803 chr3L 7985358 7985398 chr3L 7987707 7987735 NOF 13 2346 9.0 4.0 6.5 1.7 2377 chr3L 7985358 intron nmo + chr3L 7986546 intron nmo + chr3L 7987735 intron nmo + chr3L_13_7985001 chr3L_7985001 RAL-377 1804 chr3L 7990854 7990868 chr3L 7990964 7990969 8 109 0.0 0.5 0.2 6.7 115 chr3L 7990854 intron nmo + chr3L 7990912 intron nmo + chr3L 7990969 intron nmo + chr3L_8_7990001 chr3L_7990001 RAL-377 1805 chr3L 8019686 8019735 chr3L 8024118 8024166 NOF 9 4435 5.5 2.0 3.8 1.9 4480 chr3L 8019686 intron nmo + chr3L 8021926 intron nmo + chr3L 8024166 intron nmo + chr3L_9_8020001 chr3L_8020001 RAL-377 1806 chr3L 8026578 8026627 chr3L 8026676 8026727 13 98 3.0 4.0 3.5 2.9 149 chr3L 8026578 intron nmo + chr3L 8026652 intron nmo + chr3L 8026727 intron nmo + chr3L_13_8025001 chr3L_8025001 RAL-377 1807 chr3L 8062834 8062850 chr3L 8062929 8062944 5 96 3.5 6.0 4.8 0.9 110 chr3L 8062834 intergenic not near genes chr3L 8062889 intergenic not near genes chr3L 8062944 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-377 1808 chr3L 8076661 8076710 chr3L 8076764 8076813 20 101 3.5 4.0 3.8 4.2 152 chr3L 8076661 intron Ect4 + chr3L 8076737 intron Ect4 + chr3L 8076813 intron Ect4 + chr3L_20_8075001 chr3L_8075001 RAL-377 1809 chr3L 8081259 8081310 chr3L 8081382 8081433 13 123 3.0 3.5 3.2 3.1 174 chr3L 8081259 intron Ect4 + chr3L 8081346 intron Ect4 + chr3L 8081433 intron Ect4 + chr3L_13_8080001 chr3L_8080001 RAL-377 1810 chr3L 8226698 8226732 chr3L 8226817 8226851 9 118 2.0 0.0 1.0 4.5 153 chr3L 8226698 intergenic not near genes chr3L 8226774 intergenic not near genes chr3L 8226851 intergenic not near genes chr3L_9_8225001 chr3L_8225001 RAL-377 1811 chr3L 8295770 8295816 chr3L 8295948 8295994 16 177 8.0 6.5 7.2 2.0 224 chr3L 8295770 intergenic CG7201 - chr3L 8295882 intergenic not near genes chr3L 8295994 intergenic not near genes chr3L_16_8295001 chr3L_8295001 RAL-377 1812 chr3L 8369904 8369920 chr3L 8370001 8370002 5 94 6.5 5.0 5.8 0.7 98 chr3L 8369904 intergenic not near genes chr3L 8369953 intergenic not near genes chr3L 8370002 intergenic not near genes chr3L_5_8365001 chr3L_8365001 RAL-377 1813 chr3L 8392554 8392781 chr3L 8392658 8392888 25 105 2.0 6.5 4.2 4.8 334 chr3L 8392554 intergenic Jon66Ci +,Jon66Cii - chr3L 8392721 intergenic Jon66Cii -,Jon66Ci + chr3L 8392888 exon Jon66Cii - chr3L_25_8390001 chr3L_8390001 RAL-377 1814 chr3L 8414083 8414131 chr3L 8414185 8414233 14 102 3.0 3.0 3.0 3.5 150 chr3L 8414083 intron,3` UTR Exo70 +,mtrm + chr3L 8414158 intron Exo70 + chr3L 8414233 exon Exo70 + chr3L_14_8410001 chr3L_8410001 RAL-377 1815 chr3L 8456479 8456487 chr3L 8456571 8456588 5 96 9.5 10.0 9.8 0.5 109 chr3L 8456479 intron Gug + chr3L 8456534 intron Gug + chr3L 8456588 intron Gug + chr3L_5_8455001 chr3L_8455001 RAL-377 1816 chr3L 8481785 8481803 chr3L 8490938 8490943 roo 9 9158 3.0 4.5 3.8 1.9 9158 chr3L 8481785 intron CG43163 - chr3L 8486364 intron CG43163 - chr3L 8490943 intron CG43163 - chr3L_9_8485001 chr3L_8485001 RAL-377 1817 chr3L 8498282 8498321 chr3L 8505764 8505808 blood 10 7485 8.0 7.0 7.5 1.2 7526 chr3L 8498282 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505808 intron CG43163 - chr3L_10_8500001 chr3L_8500001 RAL-377 1818 chr3L 8584900 8584947 chr3L 8585011 8585061 22 112 2.0 5.5 3.8 4.6 161 chr3L 8584900 intron CG43078 + chr3L 8584980 intron CG43078 + chr3L 8585061 intron CG43078 + chr3L_22_8580001 chr3L_8580001 RAL-377 1819 chr3L 8591264 8591283 chr3L 8591386 8591431 6 140 1.0 2.0 1.5 2.4 167 chr3L 8591264 intron CG43078 + chr3L 8591348 intron CG43078 + chr3L 8591431 intron CG43078 + chr3L_6_8590001 chr3L_8590001 RAL-377 1820 chr3L 8643665 8643672 chr3L 8643758 8643761 4 98 0.0 9.5 4.8 0.7 96 chr3L 8643665 intergenic Cpr66D + chr3L 8643713 intergenic Cpr66D + chr3L 8643761 intergenic Cpr66D + chr3L_4_8640001 chr3L_8640001 RAL-377 1821 chr3L 8791261 8791309 chr3L 8796700 8796748 I-element 8 5440 4.0 0.0 2.0 2.7 5487 chr3L 8791261 exon Fhos + chr3L 8794004 intron Fhos + chr3L 8796748 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-377 1822 chr3L 8839723 8839749 chr3L 8839820 8839849 4 99 4.5 0.5 2.5 1.1 126 chr3L 8839723 intron dally + chr3L 8839786 intron dally + chr3L 8839849 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-377 1823 chr3L 8841476 8841515 chr3L 8841833 8841873 7 356 7.0 4.5 5.8 1.0 397 chr3L 8841476 intron dally + chr3L 8841674 intron dally + chr3L 8841873 intron dally + chr3L_7_8840001 chr3L_8840001 RAL-377 1824 chr3L 8913641 8913689 chr3L 8913752 8913800 9 111 2.0 0.0 1.0 4.5 159 chr3L 8913641 intron Tsp66E + chr3L 8913720 intron Tsp66E + chr3L 8913800 intron Tsp66E + chr3L_9_8910001 chr3L_8910001 RAL-377 1825 chr3L 8949379 8949510 chr3L 8949496 8949598 4 106 0.0 0.0 0.0 4.0 219 chr3L 8949379 intron,intron CG43783 -,orb2 - chr3L 8949488 intron,intron CG43783 -,orb2 - chr3L 8949598 intron,intron CG43783 -,orb2 - chr3L_4_8945001 chr3L_8945001 RAL-377 1826 chr3L 9003930 9003976 chr3L 9004032 9004074 19 103 1.5 5.5 3.5 4.2 144 chr3L 9003930 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004074 intergenic not near genes chr3L_19_9000001 chr3L_9000001 RAL-377 1827 chr3L 9009953 9009978 chr3L 9010077 9010102 10 124 1.0 6.0 3.5 2.2 149 chr3L 9009953 intergenic CG5194 - chr3L 9010028 intergenic CG5194 - chr3L 9010102 intergenic CG5194 - chr3L_10_9010001 chr3L_9010001 RAL-377 1828 chr3L 9076911 9076953 chr3L 9084487 9084533 412 14 7578 6.5 4.5 5.5 2.2 7622 chr3L 9076911 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084533 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-377 1829 chr3L 9130539 9130582 chr3L 9134320 9134347 412 8 3776 5.0 5.5 5.2 1.3 3808 chr3L 9130539 intergenic bol - chr3L 9132443 intergenic not near genes chr3L 9134347 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-377 1830 chr3L 9164681 9164728 chr3L 9166167 9166198 hobo 21 1484 6.5 0.0 3.2 5.0 1517 chr3L 9164681 intron Rdl - chr3L 9165440 intron Rdl - chr3L 9166198 intron Rdl - chr3L_21_9165001 chr3L_9165001 RAL-377 1831 chr3L 9183344 9183364 chr3L 9183503 9183547 4 174 6.5 0.0 3.2 1.0 203 chr3L 9183344 intergenic not near genes chr3L 9183446 intergenic not near genes chr3L 9183547 intergenic not near genes chr3L_4_9180001 chr3L_9180001 RAL-377 1832 chr3L 9219233 9219243 chr3L 9219925 9219935 jockey 6 691 8.5 4.0 6.2 0.8 702 chr3L 9219233 intergenic not near genes chr3L 9219584 intergenic not near genes chr3L 9219935 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-377 1833 chr3L 9219245 9219272 chr3L 9219921 9219962 jockey 11 684 5.0 4.0 4.5 2.0 717 chr3L 9219245 intergenic not near genes chr3L 9219604 intergenic not near genes chr3L 9219962 intergenic not near genes chr3L_11_9215001 chr3L_9215001 RAL-377 1834 chr3L 9268517 9268536 chr3L 9268603 9268613 5 88 4.0 3.5 3.8 1.0 96 chr3L 9268517 intron GluRIB + chr3L 9268565 intron GluRIB + chr3L 9268613 intron GluRIB + chr3L_5_9265001 chr3L_9265001 RAL-377 1835 chr3L 9270602 9270647 chr3L 9278377 9278400 roo 8 7770 0.5 1.0 0.8 4.4 7798 chr3L 9270602 intron GluRIB + chr3L 9274501 intron GluRIB + chr3L 9278400 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-377 1836 chr3L 9283442 9283481 chr3L 9283549 9283600 4 116 5.5 2.0 3.8 0.8 158 chr3L 9283442 intron GluRIB + chr3L 9283521 intron GluRIB + chr3L 9283600 intron GluRIB + chr3L_4_9280001 chr3L_9280001 RAL-377 1837 chr3L 9389405 9389420 chr3L 9389534 9389549 6 128 7.0 7.0 7.0 0.8 144 chr3L 9389405 intron CG4080 - chr3L 9389477 intron CG4080 - chr3L 9389549 intron CG4080 - chr3L_6_9385001 chr3L_9385001 RAL-377 1838 chr3L 9390831 9390869 chr3L 9390981 9391019 15 148 3.0 5.0 4.0 3.0 188 chr3L 9390831 intron CG4080 - chr3L 9390925 intron CG4080 - chr3L 9391019 intron CG4080 - chr3L_15_9390001 chr3L_9390001 RAL-377 1839 chr3L 9443492 9443519 chr3L 9445303 9445323 S-element 7 1809 10.5 0.0 5.2 1.1 1831 chr3L 9443492 intron CG33926 + chr3L 9444408 intron CG33926 + chr3L 9445323 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-377 1840 chr3L 9501685 9501706 chr3L 9502188 9502212 roo 10 506 6.5 0.0 3.2 2.4 527 chr3L 9501685 intron path - chr3L 9501948 intron path - chr3L 9502212 intron path - chr3L_10_9500001 chr3L_9500001 RAL-377 1841 chr3L 9502591 9502644 chr3L 9502691 9502744 15 97 2.5 2.0 2.2 4.7 153 chr3L 9502591 intron path - chr3L 9502668 intron path - chr3L 9502744 intron path - chr3L_15_9500001 chr3L_9500001 RAL-377 1842 chr3L 9510894 9510952 chr3L 9511007 9511051 10 109 0.0 1.5 0.8 5.6 157 chr3L 9510894 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511051 intron RpS9 - chr3L_10_9510001 chr3L_9510001 RAL-377 1843 chr3L 9512591 9512638 chr3L 9512816 9512862 17 222 2.0 4.0 3.0 4.2 271 chr3L 9512591 exon CG33703 - chr3L 9512726 intergenic CG33703 -,CG33702 - chr3L 9512862 exon CG33702 - chr3L_17_9510001 chr3L_9510001 RAL-377 1844 chr3L 9533741 9533780 chr3L 9541314 9541359 412 6 7576 4.0 5.5 4.8 1.0 7618 chr3L 9533741 intergenic not near genes chr3L 9537550 intergenic not near genes chr3L 9541359 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-377 1845 chr3L 9541835 9541868 chr3L 9541942 9541976 6 108 3.5 6.0 4.8 1.0 141 chr3L 9541835 intergenic Ir67a - chr3L 9541906 intergenic Ir67a - chr3L 9541976 intergenic Ir67a - chr3L_6_9540001 chr3L_9540001 RAL-377 1846 chr3L 9571892 9571930 chr3L 9572260 9572298 jockey 23 368 4.0 7.5 5.8 3.4 406 chr3L 9571892 intron CG42673 + chr3L 9572095 intron CG42673 + chr3L 9572298 intron CG42673 + chr3L_23_9570001 chr3L_9570001 RAL-377 1847 chr3L 9575895 9575941 chr3L 9580993 9581030 jockey 13 5096 2.5 6.0 4.2 2.5 5135 chr3L 9575895 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581030 intron CG42673 + chr3L_13_9575001 chr3L_9575001 RAL-377 1848 chr3L 9637838 9637881 chr3L 9637940 9637982 20 101 4.5 3.5 4.0 4.0 144 chr3L 9637838 intron fry - chr3L 9637910 intron fry - chr3L 9637982 intron fry - chr3L_20_9635001 chr3L_9635001 RAL-377 1849 chr3L 9646454 9646498 chr3L 9646597 9646643 13 145 4.5 0.0 2.2 4.1 189 chr3L 9646454 intron,intron fry -,CG33696 + chr3L 9646548 intron,intron fry -,CG33696 + chr3L 9646643 intron,intron fry -,CG33696 + chr3L_13_9645001 chr3L_9645001 RAL-377 1850 chr3L 9646787 9646820 chr3L 9646905 9646938 8 118 5.0 1.0 3.0 2.0 151 chr3L 9646787 intron,intron fry -,CG33696 + chr3L 9646862 intron,intron fry -,CG33696 + chr3L 9646938 intron,intron fry -,CG33696 + chr3L_8_9645001 chr3L_9645001 RAL-377 1851 chr3L 9676166 9676196 chr3L 9676276 9676306 10 107 2.0 0.0 1.0 5.0 140 chr3L 9676166 intron fry - chr3L 9676236 intron fry - chr3L 9676306 intron fry - chr3L_10_9675001 chr3L_9675001 RAL-377 1852 chr3L 9715583 9715631 chr3L 9715674 9715730 7 96 2.0 2.5 2.2 2.2 147 chr3L 9715583 intron vsg + chr3L 9715656 intron vsg + chr3L 9715730 intron vsg + chr3L_7_9715001 chr3L_9715001 RAL-377 1853 chr3L 9750615 9750649 chr3L 9750711 9750745 5 96 6.0 1.0 3.5 1.1 130 chr3L 9750615 intron CG42268 - chr3L 9750680 intron CG42268 - chr3L 9750745 intron CG42268 - chr3L_5_9750001 chr3L_9750001 RAL-377 1854 chr3L 9809708 9809746 chr3L 9809805 9809835 8 90 3.0 6.5 4.8 1.4 127 chr3L 9809708 intergenic not near genes chr3L 9809772 intergenic not near genes chr3L 9809835 intergenic not near genes chr3L_8_9805001 chr3L_9805001 RAL-377 1855 chr3L 9871171 9871223 chr3L 9871287 9871339 12 115 3.0 2.0 2.5 3.4 168 chr3L 9871171 intergenic CG8108 + chr3L 9871255 intergenic not near genes chr3L 9871339 intergenic not near genes chr3L_12_9870001 chr3L_9870001 RAL-377 1856 chr3L 9929667 9929698 chr3L 9938468 9938499 roo 9 8800 3.5 10.5 7.0 1.1 8832 chr3L 9929667 intron CG34356 + chr3L 9934083 intron CG34356 + chr3L 9938499 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-377 1857 chr3L 9939167 9939216 chr3L 9939270 9939319 17 102 4.5 6.0 5.2 2.7 152 chr3L 9939167 intron CG34356 + chr3L 9939243 intron CG34356 + chr3L 9939319 intron CG34356 + chr3L_17_9935001 chr3L_9935001 RAL-377 1858 chr3L 9941948 9941962 chr3L 9942044 9942058 5 95 1.5 4.5 3.0 1.2 110 chr3L 9941948 intron CG34356 + chr3L 9942003 intron CG34356 + chr3L 9942058 intron CG34356 + chr3L_5_9940001 chr3L_9940001 RAL-377 1859 chr3L 9976975 9976985 chr3L 9977074 9977086 4 100 0.0 1.5 0.8 2.2 111 chr3L 9976975 intron dpr6 + chr3L 9977030 intron dpr6 + chr3L 9977086 intron dpr6 + chr3L_4_9975001 chr3L_9975001 RAL-377 1860 chr3L 10011578 10011620 chr3L 10011674 10011721 11 100 3.0 1.0 2.0 3.7 143 chr3L 10011578 intron dpr6 + chr3L 10011650 intron dpr6 + chr3L 10011721 intron dpr6 + chr3L_11_10010001 chr3L_10010001 RAL-377 1861 chr3L 10032552 10032563 chr3L 10032659 10032670 4 107 0.0 4.5 2.2 1.2 118 chr3L 10032552 intron dpr6 + chr3L 10032611 intron dpr6 + chr3L 10032670 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-377 1862 chr3L 10049521 10049569 chr3L 10049621 10049669 13 99 5.0 6.0 5.5 2.0 148 chr3L 10049521 intron dpr6 + chr3L 10049595 intron dpr6 + chr3L 10049669 intron dpr6 + chr3L_13_10045001 chr3L_10045001 RAL-377 1863 chr3L 10060098 10060110 chr3L 10067697 10067709 17.6 6 7599 9.5 6.5 8.0 0.7 7611 chr3L 10060098 intron dpr6 + chr3L 10063904 intron dpr6 + chr3L 10067709 intron dpr6 + chr3L_6_10060001 chr3L_10060001 RAL-377 1864 chr3L 10120263 10120295 chr3L 10120376 10120408 5 111 7.0 3.0 5.0 0.8 145 chr3L 10120263 intron dpr6 + chr3L 10120336 intron dpr6 + chr3L 10120408 intron dpr6 + chr3L_5_10120001 chr3L_10120001 RAL-377 1865 chr3L 10120296 10120308 chr3L 10120374 10120421 5 92 4.0 2.5 3.2 1.2 125 chr3L 10120296 intron dpr6 + chr3L 10120358 intron dpr6 + chr3L 10120421 intron dpr6 + chr3L_5_10120001 chr3L_10120001 RAL-377 1866 chr3L 10141282 10141331 chr3L 10141385 10141428 13 102 3.5 4.5 4.0 2.6 146 chr3L 10141282 intergenic not near genes chr3L 10141355 intergenic not near genes chr3L 10141428 intergenic not near genes chr3L_13_10140001 chr3L_10140001 RAL-377 1867 chr3L 10214711 10214831 chr3L 10214818 10214953 12 114 0.0 0.0 0.0 12.0 242 chr3L 10214711 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214953 intergenic not near genes chr3L_12_10210001 chr3L_10210001 RAL-377 1868 chr3L 10248951 10249137 chr3L 10249044 10249234 14 97 0.0 0.0 0.0 14.0 283 chr3L 10248951 intergenic CR44540 - chr3L 10249092 intergenic not near genes chr3L 10249234 intergenic not near genes chr3L_14_10245001 chr3L_10245001 RAL-377 1869 chr3L 10298653 10298702 chr3L 10298760 10298810 10 107 2.0 0.0 1.0 5.0 157 chr3L 10298653 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298810 intergenic not near genes chr3L_10_10295001 chr3L_10295001 RAL-377 1870 chr3L 10308745 10308770 chr3L 10308842 10308867 7 96 1.0 5.0 3.0 1.8 122 chr3L 10308745 intergenic not near genes chr3L 10308806 intergenic not near genes chr3L 10308867 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-377 1871 chr3L 10328095 10328129 chr3L 10328227 10328261 18 132 9.0 5.0 7.0 2.2 166 chr3L 10328095 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328261 intergenic not near genes chr3L_18_10325001 chr3L_10325001 RAL-377 1872 chr3L 10367497 10367521 chr3L 10367594 10367618 12 97 3.0 1.5 2.2 3.8 121 chr3L 10367497 intergenic CR44327 + chr3L 10367558 intergenic CR44327 + chr3L 10367618 intergenic CR44327 + chr3L_12_10365001 chr3L_10365001 RAL-377 1873 chr3L 10397278 10397325 chr3L 10397377 10397424 18 97 2.5 0.0 1.2 8.2 146 chr3L 10397278 intergenic not near genes chr3L 10397351 intergenic not near genes chr3L 10397424 intergenic not near genes chr3L_18_10395001 chr3L_10395001 RAL-377 1874 chr3L 10414930 10414969 chr3L 10417322 10417361 Doc 14 2392 0.0 3.5 1.8 5.0 2431 chr3L 10414930 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417361 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-377 1875 chr3L 10417556 10417577 chr3L 10417653 10417672 5 95 8.5 4.0 6.2 0.7 116 chr3L 10417556 intergenic not near genes chr3L 10417614 intergenic not near genes chr3L 10417672 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-377 1876 chr3L 10417586 10417602 chr3L 10417646 10417699 5 85 5.0 3.5 4.2 1.0 113 chr3L 10417586 intergenic not near genes chr3L 10417642 intergenic not near genes chr3L 10417699 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-377 1877 chr3L 10518577 10518606 chr3L 10518732 10518761 11 155 3.5 4.5 4.0 2.2 184 chr3L 10518577 intron A2bp1 + chr3L 10518669 intron A2bp1 + chr3L 10518761 intron A2bp1 + chr3L_11_10515001 chr3L_10515001 RAL-377 1878 chr3L 10532735 10532774 chr3L 10532834 10532873 12 98 5.0 3.0 4.0 2.4 138 chr3L 10532735 intron A2bp1 + chr3L 10532804 intron A2bp1 + chr3L 10532873 intron A2bp1 + chr3L_12_10530001 chr3L_10530001 RAL-377 1879 chr3L 10584262 10584300 chr3L 10584369 10584407 18 107 7.5 6.5 7.0 2.2 145 chr3L 10584262 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584407 intron A2bp1 + chr3L_18_10580001 chr3L_10580001 RAL-377 1880 chr3L 10600459 10600497 chr3L 10600564 10600602 20 104 6.5 2.5 4.5 3.6 143 chr3L 10600459 intergenic not near genes chr3L 10600530 intergenic not near genes chr3L 10600602 intergenic not near genes chr3L_20_10600001 chr3L_10600001 RAL-377 1881 chr3L 10614747 10614795 chr3L 10614854 10614894 10 104 0.0 4.5 2.2 3.1 147 chr3L 10614747 intergenic not near genes chr3L 10614820 intergenic not near genes chr3L 10614894 intergenic not near genes chr3L_10_10610001 chr3L_10610001 RAL-377 1882 chr3L 10696357 10696407 chr3L 10696461 10696511 17 103 4.0 4.5 4.2 3.3 154 chr3L 10696357 intron NijA - chr3L 10696434 intron NijA - chr3L 10696511 intron NijA - chr3L_17_10695001 chr3L_10695001 RAL-377 1883 chr3L 10721982 10722010 chr3L 10722074 10722112 9 100 7.0 0.0 3.5 2.0 130 chr3L 10721982 intergenic not near genes chr3L 10722047 intergenic not near genes chr3L 10722112 intergenic not near genes chr3L_9_10720001 chr3L_10720001 RAL-377 1884 chr3L 10762811 10762853 chr3L 10762915 10762939 9 99 6.0 2.0 4.0 1.8 128 chr3L 10762811 intergenic not near genes chr3L 10762875 intergenic not near genes chr3L 10762939 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-377 1885 chr3L 10956439 10956463 chr3L 10956577 10956601 7 138 1.0 4.5 2.8 1.8 162 chr3L 10956439 intergenic not near genes chr3L 10956520 intergenic not near genes chr3L 10956601 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-377 1886 chr3L 11052353 11052362 chr3L 11052448 11052460 5 97 0.5 6.5 3.5 1.1 107 chr3L 11052353 intergenic not near genes chr3L 11052406 intergenic not near genes chr3L 11052460 intergenic not near genes chr3L_5_11050001 chr3L_11050001 RAL-377 1887 chr3L 11087040 11087084 chr3L 11088849 11088893 S-element 13 1807 4.0 3.0 3.5 2.9 1853 chr3L 11087040 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088893 intron JIL-1 - chr3L_13_11085001 chr3L_11085001 RAL-377 1888 chr3L 11090071 11090088 chr3L 11090179 11090196 11 108 4.5 9.5 7.0 1.4 125 chr3L 11090071 intron JIL-1 - chr3L 11090134 intron JIL-1 - chr3L 11090196 intron JIL-1 - chr3L_11_11090001 chr3L_11090001 RAL-377 1889 chr3L 11105280 11105323 chr3L 11107011 11107034 X-element 10 1728 5.5 3.5 4.5 1.8 1754 chr3L 11105280 intergenic not near genes chr3L 11106157 intergenic not near genes chr3L 11107034 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-377 1890 chr3L 11127198 11127216 chr3L 11127295 11127313 8 97 5.0 3.5 4.2 1.5 115 chr3L 11127198 intron CG42575 + chr3L 11127256 intron CG42575 + chr3L 11127313 intron CG42575 + chr3L_8_11125001 chr3L_11125001 RAL-377 1891 chr3L 11131789 11131808 chr3L 11132073 11132092 6 284 7.0 7.5 7.2 0.7 303 chr3L 11131789 intron CG42575 + chr3L 11131940 intron,3` UTR CG42575 +,CG32074 - chr3L 11132092 intron,exon CG42575 +,CG32074 - chr3L_6_11130001 chr3L_11130001 RAL-377 1892 chr3L 11218473 11218521 chr3L 11218652 11218700 22 178 8.5 5.5 7.0 2.8 227 chr3L 11218473 intron CG42671 + chr3L 11218586 intron CG42671 + chr3L 11218700 intron CG42671 + chr3L_22_11215001 chr3L_11215001 RAL-377 1893 chr3L 11247018 11247068 chr3L 11247145 11247195 22 126 3.5 4.0 3.8 4.6 177 chr3L 11247018 3` UTR,5` UTR CR44714 -,CR44713 + chr3L 11247106 3` UTR,5` UTR CR44714 -,CR44713 + chr3L 11247195 3` UTR,5` UTR CR44714 -,CR44713 + chr3L_22_11245001 chr3L_11245001 RAL-377 1894 chr3L 11250558 11250606 chr3L 11250668 11250717 24 107 5.5 4.0 4.8 4.1 159 chr3L 11250558 5` UTR,3` UTR CR44717 +,CR44716 - chr3L 11250638 5` UTR,3` UTR CR44717 +,CR44716 - chr3L 11250717 5` UTR,3` UTR CR44717 +,CR44716 - chr3L_24_11250001 chr3L_11250001 RAL-377 1895 chr3L 11264447 11264496 chr3L 11271418 11271439 17.6 8 6968 3.0 5.0 4.0 1.6 6992 chr3L 11264447 intergenic not near genes chr3L 11267943 intergenic not near genes chr3L 11271439 intergenic not near genes chr3L_8_11265001 chr3L_11265001 RAL-377 1896 chr3L 11329681 11329723 chr3L 11332901 11332929 jockey 8 3214 2.0 2.5 2.2 2.5 3248 chr3L 11329681 intergenic not near genes chr3L 11331305 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_8_11330001 chr3L_11330001 RAL-377 1897 chr3L 11379322 11379328 chr3L 11379420 11379426 4 98 9.0 7.0 8.0 0.4 104 chr3L 11379322 intergenic not near genes chr3L 11379374 intergenic not near genes chr3L 11379426 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-377 1898 chr3L 11379331 11379350 chr3L 11379419 11379441 6 95 5.5 7.0 6.2 0.8 110 chr3L 11379331 intergenic not near genes chr3L 11379386 intergenic not near genes chr3L 11379441 intergenic not near genes chr3L_6_11375001 chr3L_11375001 RAL-377 1899 chr3L 11445032 11445059 chr3L 11445129 11445156 12 97 0.0 5.5 2.8 3.2 124 chr3L 11445032 3` UTR CR44549 - chr3L 11445094 3` UTR CR44549 - chr3L 11445156 intergenic CG7557 +,CR44549 - chr3L_12_11445001 chr3L_11445001 RAL-377 1900 chr3L 11562501 11562504 chr3L 14578736 14578739 4 3016235 0.0 7.0 3.5 0.9 3016238 chr3L 11562501 intron CG7394 + chr3L 13070620 intergenic not near genes chr3L 14578739 intergenic not near genes chr3L_4_13070001 chr3L_13070001 RAL-377 1901 chr3L 11564791 11564809 chr3L 11572415 11572428 412 4 7624 1.5 4.0 2.8 1.1 7637 chr3L 11564791 exon CG33267 + chr3L 11568610 intron CG33267 + chr3L 11572428 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-377 1902 chr3L 11579539 11579585 chr3L 11579665 11579711 18 126 4.5 5.5 5.0 3.0 172 chr3L 11579539 intergenic CG43390 - chr3L 11579625 intergenic CG43390 - chr3L 11579711 intergenic CG43390 - chr3L_18_11575001 chr3L_11575001 RAL-377 1903 chr3L 11587902 11587954 chr3L 11587998 11588050 13 95 4.5 5.0 4.8 2.2 148 chr3L 11587902 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588050 intergenic rt - chr3L_13_11585001 chr3L_11585001 RAL-377 1904 chr3L 11588711 11588757 chr3L 11588887 11588933 14 175 2.0 5.0 3.5 3.1 222 chr3L 11588711 intergenic not near genes chr3L 11588822 intergenic not near genes chr3L 11588933 intergenic not near genes chr3L_14_11585001 chr3L_11585001 RAL-377 1905 chr3L 11590253 11590271 chr3L 11590363 11590381 8 110 1.5 2.0 1.8 2.9 128 chr3L 11590253 intergenic CG7377 + chr3L 11590317 intergenic CG7377 + chr3L 11590381 intergenic CG7377 +,CG33268 - chr3L_8_11590001 chr3L_11590001 RAL-377 1906 chr3L 11678085 11678125 chr3L 11678192 11678232 11 107 6.0 6.0 6.0 1.6 147 chr3L 11678085 intron CG32085 - chr3L 11678158 intron CG32085 - chr3L 11678232 intron CG32085 - chr3L_11_11675001 chr3L_11675001 RAL-377 1907 chr3L 11723067 11723114 chr3L 11727882 11727929 Doc 17 4815 6.5 6.0 6.2 2.4 4862 chr3L 11723067 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727929 3` UTR Bmcp + chr3L_17_11725001 chr3L_11725001 RAL-377 1908 chr3L 11743371 11743423 chr3L 11743532 11743584 22 161 3.5 3.5 3.5 4.9 213 chr3L 11743371 intron CG6024 - chr3L 11743478 intron CG6024 - chr3L 11743584 intron CG6024 - chr3L_22_11740001 chr3L_11740001 RAL-377 1909 chr3L 11743995 11744016 chr3L 11744123 11744144 7 126 7.5 3.0 5.2 1.1 149 chr3L 11743995 exon CG6024 - chr3L 11744070 intron CG6024 - chr3L 11744144 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-377 1910 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028207 17.0 9.0 13.0 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 RAL-377 1911 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 8.5 16.5 12.5 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-377 1912 chr3L 11811454 11811488 chr3L 11811552 11811581 15 97 2.0 7.5 4.8 2.6 127 chr3L 11811454 intron CG42255 - chr3L 11811518 intron CG42255 - chr3L 11811581 exon CG42255 - chr3L_15_11810001 chr3L_11810001 RAL-377 1913 chr3L 11833693 11833743 chr3L 11833817 11833842 5 119 2.0 5.0 3.5 1.1 149 chr3L 11833693 intergenic CycA - chr3L 11833768 intergenic CycA - chr3L 11833842 intergenic CycA - chr3L_5_11830001 chr3L_11830001 RAL-377 1914 chr3L 11837155 11837170 chr3L 11837255 11837271 4 101 1.0 0.0 0.5 2.7 116 chr3L 11837155 intergenic CG43064 - chr3L 11837213 intergenic CG43064 - chr3L 11837271 intergenic not near genes chr3L_4_11835001 chr3L_11835001 RAL-377 1915 chr3L 11843358 11843374 chr3L 11843457 11843473 12 99 0.5 4.0 2.2 3.8 115 chr3L 11843358 intergenic not near genes chr3L 11843416 intergenic not near genes chr3L 11843473 intergenic not near genes chr3L_12_11840001 chr3L_11840001 RAL-377 1916 chr3L 11846399 11846418 chr3L 11846512 11846546 8 125 1.0 3.5 2.2 2.5 147 chr3L 11846399 intergenic not near genes chr3L 11846472 intergenic not near genes chr3L 11846546 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-377 1917 chr3L 11849311 11849356 chr3L 11849431 11849476 8 119 2.0 3.5 2.8 2.1 165 chr3L 11849311 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849476 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-377 1918 chr3L 11850121 11850169 chr3L 11850236 11850284 19 115 5.5 2.0 3.8 4.0 163 chr3L 11850121 intergenic not near genes chr3L 11850202 intergenic CG44837 - chr3L 11850284 intergenic CG44837 - chr3L_19_11850001 chr3L_11850001 RAL-377 1919 chr3L 11864540 11864583 chr3L 11865853 11865898 pogo 17 1313 5.0 6.0 5.5 2.6 1358 chr3L 11864540 intron CG44837 - chr3L 11865219 intron CG44837 - chr3L 11865898 intron CG44837 - chr3L_17_11865001 chr3L_11865001 RAL-377 1920 chr3L 11887238 11887288 chr3L 11887355 11887410 11 117 1.5 0.0 0.8 6.1 172 chr3L 11887238 intron CG44837 - chr3L 11887324 intron,3` UTR CG44837 -,CG5897 - chr3L 11887410 intron,3` UTR CG44837 -,CG5897 - chr3L_11_11885001 chr3L_11885001 RAL-377 1921 chr3L 12013892 12013899 chr3L 12014003 12014010 4 111 11.5 1.0 6.2 0.6 118 chr3L 12013892 intron rols - chr3L 12013951 intron rols - chr3L 12014010 intron rols - chr3L_4_12010001 chr3L_12010001 RAL-377 1922 chr3L 12013901 12013937 chr3L 12014002 12014048 12 107 2.5 1.0 1.8 4.3 147 chr3L 12013901 intron rols - chr3L 12013974 intron rols - chr3L 12014048 intron rols - chr3L_12_12010001 chr3L_12010001 RAL-377 1923 chr3L 12034869 12034920 chr3L 12034966 12035017 16 97 2.5 6.0 4.2 3.1 148 chr3L 12034869 intron rols - chr3L 12034943 intron rols - chr3L 12035017 intron rols - chr3L_16_12030001 chr3L_12030001 RAL-377 1924 chr3L 12067073 12067081 chr3L 12067172 12067175 5 98 0.0 0.0 0.0 5.0 102 chr3L 12067073 intergenic Sema-5c - chr3L 12067124 intergenic Sema-5c - chr3L 12067175 intergenic Sema-5c - chr3L_5_12065001 chr3L_12065001 RAL-377 1925 chr3L 12075408 12075460 chr3L 12075517 12075564 8 105 2.5 0.0 1.2 3.6 156 chr3L 12075408 intron Sema-5c - chr3L 12075486 intron Sema-5c - chr3L 12075564 intron Sema-5c - chr3L_8_12075001 chr3L_12075001 RAL-377 1926 chr3L 12089061 12089105 chr3L 12089161 12089204 18 100 7.0 6.5 6.8 2.3 143 chr3L 12089061 exon CG17154 + chr3L 12089132 3` UTR CG17154 + chr3L 12089204 3` UTR CG17154 + chr3L_18_12085001 chr3L_12085001 RAL-377 1927 chr3L 12092379 12092407 chr3L 12092476 12092504 11 97 4.5 3.0 3.8 2.3 125 chr3L 12092379 intergenic not near genes chr3L 12092442 intergenic not near genes chr3L 12092504 intergenic not near genes chr3L_11_12090001 chr3L_12090001 RAL-377 1928 chr3L 12304090 12304118 chr3L 12304186 12304214 9 93 3.0 6.0 4.5 1.6 124 chr3L 12304090 intergenic not near genes chr3L 12304152 intergenic not near genes chr3L 12304214 intergenic not near genes chr3L_9_12300001 chr3L_12300001 RAL-377 1929 chr3L 12307588 12307620 chr3L 12307688 12307720 12 100 4.5 0.0 2.2 3.8 132 chr3L 12307588 intergenic not near genes chr3L 12307654 intergenic not near genes chr3L 12307720 intergenic not near genes chr3L_12_12305001 chr3L_12305001 RAL-377 1930 chr3L 12326723 12326776 chr3L 12326819 12326872 14 95 3.0 4.5 3.8 2.9 149 chr3L 12326723 intergenic not near genes chr3L 12326798 intergenic not near genes chr3L 12326872 intergenic not near genes chr3L_14_12325001 chr3L_12325001 RAL-377 1931 chr3L 12364155 12364173 chr3L 12364313 12364321 6 156 0.0 2.0 1.0 3.0 166 chr3L 12364155 intergenic not near genes chr3L 12364238 intergenic not near genes chr3L 12364321 intergenic not near genes chr3L_6_12360001 chr3L_12360001 RAL-377 1932 chr3L 12369519 12369567 chr3L 12369629 12369677 18 110 5.5 3.5 4.5 3.3 158 chr3L 12369519 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369677 intron Ncc69 - chr3L_18_12365001 chr3L_12365001 RAL-377 1933 chr3L 12411028 12411066 chr3L 12411158 12411196 18 130 0.5 10.0 5.2 2.9 168 chr3L 12411028 intron CG32103 - chr3L 12411112 intron CG32103 - chr3L 12411196 intron CG32103 - chr3L_18_12410001 chr3L_12410001 RAL-377 1934 chr3L 12614558 12614593 chr3L 12614723 12614751 4 160 0.0 0.0 0.0 4.0 193 chr3L 12614558 intron caup + chr3L 12614654 intron caup + chr3L 12614751 intron caup + chr3L_4_12610001 chr3L_12610001 RAL-377 1935 chr3L 12626136 12626163 chr3L 12626265 12626292 18 129 5.0 2.0 3.5 4.0 156 chr3L 12626136 intergenic not near genes chr3L 12626214 intergenic not near genes chr3L 12626292 intergenic not near genes chr3L_18_12625001 chr3L_12625001 RAL-377 1936 chr3L 12706622 12706651 chr3L 12706769 12706798 14 147 2.0 6.0 4.0 2.8 176 chr3L 12706622 intron mirr + chr3L 12706710 intron mirr + chr3L 12706798 intron mirr + chr3L_14_12705001 chr3L_12705001 RAL-377 1937 chr3L 12728017 12728040 chr3L 12728121 12728144 8 104 3.0 6.0 4.5 1.5 127 chr3L 12728017 intergenic not near genes chr3L 12728080 intergenic not near genes chr3L 12728144 intergenic not near genes chr3L_8_12725001 chr3L_12725001 RAL-377 1938 chr3L 12799821 12799838 chr3L 12799949 12799963 9 127 13.5 12.0 12.8 0.7 142 chr3L 12799821 intron Atg1 - chr3L 12799892 intron Atg1 - chr3L 12799963 intron Atg1 - chr3L_9_12795001 chr3L_12795001 RAL-377 1939 chr3L 12837534 12837584 chr3L 12839038 12839088 20 1499 2.5 2.5 2.5 5.7 1554 chr3L 12837534 intron CG10960 - chr3L 12838311 intron CG10960 - chr3L 12839088 intron CG10960 - chr3L_20_12835001 chr3L_12835001 RAL-377 1940 chr3L 12857980 12858004 chr3L 12858094 12858118 10 114 3.5 4.5 4.0 2.0 138 chr3L 12857980 3` UTR CG32107 - chr3L 12858049 3` UTR CG32107 - chr3L 12858118 3` UTR CG32107 - chr3L_10_12855001 chr3L_12855001 RAL-377 1941 chr3L 12874923 12874956 chr3L 12877235 12877268 jockey 11 2312 3.0 7.5 5.2 1.8 2345 chr3L 12874923 intergenic not near genes chr3L 12876096 intergenic not near genes chr3L 12877268 intergenic not near genes chr3L_11_12875001 chr3L_12875001 RAL-377 1942 chr3L 12894797 12894799 chr3L 12894895 12894897 4 98 13.5 7.0 10.2 0.4 100 chr3L 12894797 intergenic CG14118 + chr3L 12894847 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-377 1943 chr3L 12919259 12919302 chr3L 12924752 12924768 Rt1c 7 5485 5.0 5.5 5.2 1.1 5509 chr3L 12919259 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924768 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-377 1944 chr3L 12957094 12957118 chr3L 12957447 12957471 6 350 3.0 3.5 3.2 1.4 377 chr3L 12957094 intergenic not near genes chr3L 12957282 intergenic not near genes chr3L 12957471 intergenic not near genes chr3L_6_12955001 chr3L_12955001 RAL-377 1945 chr3L 12957768 12957816 chr3L 12962269 12962318 copia 14 4502 2.0 6.5 4.2 2.7 4550 chr3L 12957768 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962318 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-377 1946 chr3L 12966111 12966162 chr3L 12966220 12966271 9 109 5.5 0.0 2.8 2.4 160 chr3L 12966111 intron Or69a - chr3L 12966191 intron Or69a - chr3L 12966271 intron Or69a - chr3L_9_12965001 chr3L_12965001 RAL-377 1947 chr3L 12980498 12980553 chr3L 12980609 12980666 5 112 1.5 0.0 0.8 2.8 168 chr3L 12980498 intergenic not near genes chr3L 12980582 intergenic not near genes chr3L 12980666 intergenic not near genes chr3L_5_12980001 chr3L_12980001 RAL-377 1948 chr3L 13007676 13007721 chr3L 13007775 13007811 9 97 3.0 2.5 2.8 2.4 135 chr3L 13007676 exon CG11263 + chr3L 13007744 3` UTR CG11263 + chr3L 13007811 3` UTR CG11263 + chr3L_9_13005001 chr3L_13005001 RAL-377 1949 chr3L 13056453 13056731 chr3L 13056630 13056826 9 112 0.0 0.0 0.0 9.0 373 chr3L 13056453 intergenic not near genes chr3L 13056640 intergenic not near genes chr3L 13056826 intergenic not near genes chr3L_9_13055001 chr3L_13055001 RAL-377 1950 chr3L 13069540 13069587 chr3L 13069639 13069686 12 98 2.5 4.5 3.5 2.7 146 chr3L 13069540 intergenic not near genes chr3L 13069613 intergenic not near genes chr3L 13069686 intergenic not near genes chr3L_12_13065001 chr3L_13065001 RAL-377 1951 chr3L 13142135 13142166 chr3L 13142268 13142299 13 133 2.0 4.0 3.0 3.2 164 chr3L 13142135 intergenic not near genes chr3L 13142217 intergenic not near genes chr3L 13142299 intergenic not near genes chr3L_13_13140001 chr3L_13140001 RAL-377 1952 chr3L 13144113 13144149 chr3L 13144193 13144246 8 95 3.5 2.5 3.0 2.0 133 chr3L 13144113 intergenic not near genes chr3L 13144180 intergenic not near genes chr3L 13144246 intergenic not near genes chr3L_8_13140001 chr3L_13140001 RAL-377 1953 chr3L 13182430 13182471 chr3L 13182528 13182569 6 97 3.5 0.0 1.8 2.1 139 chr3L 13182430 intergenic not near genes chr3L 13182500 intergenic not near genes chr3L 13182569 intergenic not near genes chr3L_6_13180001 chr3L_13180001 RAL-377 1954 chr3L 13194045 13194098 chr3L 13194144 13194197 16 98 4.0 3.0 3.5 3.6 152 chr3L 13194045 intergenic not near genes chr3L 13194121 intergenic not near genes chr3L 13194197 intergenic not near genes chr3L_16_13190001 chr3L_13190001 RAL-377 1955 chr3L 13208347 13208366 chr3L 13208446 13208465 5 98 3.5 0.0 1.8 1.8 118 chr3L 13208347 intergenic CR45096 - chr3L 13208406 intergenic CR45096 - chr3L 13208465 intergenic CR45096 - chr3L_5_13205001 chr3L_13205001 RAL-377 1956 chr3L 13293095 13293142 chr3L 13293201 13293246 11 103 4.0 1.5 2.8 2.9 151 chr3L 13293095 intergenic not near genes chr3L 13293170 intergenic not near genes chr3L 13293246 intergenic not near genes chr3L_11_13290001 chr3L_13290001 RAL-377 1957 chr3L 13295878 13295928 chr3L 13295980 13296030 12 102 0.0 6.0 3.0 3.0 152 chr3L 13295878 intergenic not near genes chr3L 13295954 intergenic not near genes chr3L 13296030 intergenic Sfp70A4 - chr3L_12_13295001 chr3L_13295001 RAL-377 1958 chr3L 13311002 13311052 chr3L 13311103 13311123 11 89 3.5 2.0 2.8 2.9 121 chr3L 13311002 intergenic not near genes chr3L 13311062 intergenic not near genes chr3L 13311123 intergenic not near genes chr3L_11_13310001 chr3L_13310001 RAL-377 1959 chr3L 13311775 13311821 chr3L 13311872 13311916 16 97 3.5 3.5 3.5 3.6 141 chr3L 13311775 intergenic not near genes chr3L 13311846 intergenic not near genes chr3L 13311916 intergenic not near genes chr3L_16_13310001 chr3L_13310001 RAL-377 1960 chr3L 13338324 13338355 chr3L 13338459 13338489 18 134 6.0 5.0 5.5 2.8 165 chr3L 13338324 intergenic not near genes chr3L 13338406 intergenic not near genes chr3L 13338489 intergenic not near genes chr3L_18_13335001 chr3L_13335001 RAL-377 1961 chr3L 13392745 13392764 chr3L 13392848 13392862 6 102 4.5 0.0 2.2 1.9 117 chr3L 13392745 intergenic not near genes chr3L 13392804 intergenic not near genes chr3L 13392862 intergenic not near genes chr3L_6_13390001 chr3L_13390001 RAL-377 1962 chr3L 13525143 13525184 chr3L 13532959 13532997 roo 16 7814 7.0 6.0 6.5 2.1 7854 chr3L 13525143 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532997 intergenic not near genes chr3L_16_13525001 chr3L_13525001 RAL-377 1963 chr3L 13596018 13596063 chr3L 13596153 13596198 8 134 5.5 0.0 2.8 2.1 180 chr3L 13596018 intron bru-3 - chr3L 13596108 intron bru-3 - chr3L 13596198 intron bru-3 - chr3L_8_13595001 chr3L_13595001 RAL-377 1964 chr3L 13605313 13605370 chr3L 13605412 13605466 13 93 1.5 3.0 2.2 4.1 153 chr3L 13605313 intron bru-3 - chr3L 13605390 intron bru-3 - chr3L 13605466 intron bru-3 - chr3L_13_13605001 chr3L_13605001 RAL-377 1965 chr3L 13677510 13677559 chr3L 13677607 13677656 15 97 3.5 3.0 3.2 3.6 146 chr3L 13677510 intron bru-3 - chr3L 13677583 intron bru-3 - chr3L 13677656 intron bru-3 - chr3L_15_13675001 chr3L_13675001 RAL-377 1966 chr3L 13703435 13703465 chr3L 13703530 13703571 12 102 4.5 7.5 6.0 1.7 136 chr3L 13703435 intron bru-3 - chr3L 13703503 intron bru-3 - chr3L 13703571 intron bru-3 - chr3L_12_13700001 chr3L_13700001 RAL-377 1967 chr3L 13722425 13722472 chr3L 13722523 13722570 12 94 3.0 3.0 3.0 3.0 145 chr3L 13722425 intron bru-3 - chr3L 13722498 intron bru-3 - chr3L 13722570 intron bru-3 - chr3L_12_13720001 chr3L_13720001 RAL-377 1968 chr3L 13740012 13740047 chr3L 13740125 13740160 9 112 3.0 3.0 3.0 2.2 148 chr3L 13740012 intron bru-3 - chr3L 13740086 intron bru-3 - chr3L 13740160 intron bru-3 - chr3L_9_13740001 chr3L_13740001 RAL-377 1969 chr3L 13804524 13804569 chr3L 13822830 13822875 roo 14 18306 1.0 6.0 3.5 3.1 18351 chr3L 13804524 intergenic not near genes chr3L 13813700 intergenic not near genes chr3L 13822875 intergenic not near genes chr3L_14_13810001 chr3L_13810001 RAL-377 1970 chr3L 13841138 13841156 chr3L 13841245 13841263 11 107 5.0 3.5 4.2 2.1 125 chr3L 13841138 3` UTR CG8757 - chr3L 13841200 3` UTR CG8757 - chr3L 13841263 3` UTR CG8757 - chr3L_11_13840001 chr3L_13840001 RAL-377 1971 chr3L 13884359 13884385 chr3L 13884470 13884496 7 111 5.0 4.5 4.8 1.2 137 chr3L 13884359 intron dysc - chr3L 13884428 intron dysc - chr3L 13884496 intron dysc - chr3L_7_13880001 chr3L_13880001 RAL-377 1972 chr3L 13920399 13920433 chr3L 13920499 13920533 16 99 5.5 5.5 5.5 2.5 134 chr3L 13920399 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920533 intron Rgl - chr3L_16_13920001 chr3L_13920001 RAL-377 1973 chr3L 14076054 14076104 chr3L 14076153 14076203 14 99 2.0 3.5 2.8 3.7 149 chr3L 14076054 3` UTR,intron Pex1 +,btl + chr3L 14076128 intron btl + chr3L 14076203 intron btl + chr3L_14_14075001 chr3L_14075001 RAL-377 1974 chr3L 14118070 14118122 chr3L 14118192 14118244 16 121 3.5 5.5 4.5 2.9 174 chr3L 14118070 intron Sox21b - chr3L 14118157 intron Sox21b - chr3L 14118244 intron Sox21b - chr3L_16_14115001 chr3L_14115001 RAL-377 1975 chr3L 14139849 14139871 chr3L 14139962 14139984 10 112 9.0 2.0 5.5 1.5 135 chr3L 14139849 intergenic not near genes chr3L 14139916 intergenic not near genes chr3L 14139984 intergenic not near genes chr3L_10_14135001 chr3L_14135001 RAL-377 1976 chr3L 14236035 14236072 chr3L 14236192 14236223 15 155 5.0 6.5 5.8 2.2 188 chr3L 14236035 intergenic CG34244 - chr3L 14236129 intergenic CG34244 - chr3L 14236223 intergenic CG34244 -,CG7906 + chr3L_15_14235001 chr3L_14235001 RAL-377 1977 chr3L 14239970 14239997 chr3L 14240087 14240113 7 114 3.5 3.5 3.5 1.6 143 chr3L 14239970 intergenic not near genes chr3L 14240042 intergenic not near genes chr3L 14240113 intergenic not near genes chr3L_7_14240001 chr3L_14240001 RAL-377 1978 chr3L 14245571 14245593 chr3L 14245674 14245707 1360 10 112 3.5 5.0 4.2 1.9 136 chr3L 14245571 3` UTR CR44561 - chr3L 14245639 3` UTR CR44561 - chr3L 14245707 intergenic CR44561 -,CR44560 + chr3L_10_14245001 chr3L_14245001 RAL-377 1979 chr3L 14267354 14267390 chr3L 14271814 14271842 F-element 11 4457 7.0 9.5 8.2 1.2 4488 chr3L 14267354 intergenic not near genes chr3L 14269598 intergenic not near genes chr3L 14271842 intergenic not near genes chr3L_11_14265001 chr3L_14265001 RAL-377 1980 chr3L 14295963 14296008 chr3L 14296469 14296513 roo 12 504 3.5 9.0 6.2 1.7 550 chr3L 14295963 intron fz + chr3L 14296238 intron fz + chr3L 14296513 intron fz + chr3L_12_14295001 chr3L_14295001 RAL-377 1981 chr3L 14329005 14329048 chr3L 14329101 14329145 19 96 2.5 4.5 3.5 4.2 140 chr3L 14329005 intron fz + chr3L 14329075 intron fz + chr3L 14329145 intron fz + chr3L_19_14325001 chr3L_14325001 RAL-377 1982 chr3L 14341425 14341439 chr3L 14341580 14341594 5 155 0.0 2.0 1.0 2.5 169 chr3L 14341425 intron fz + chr3L 14341510 intron fz + chr3L 14341594 intron fz + chr3L_5_14340001 chr3L_14340001 RAL-377 1983 chr3L 14345498 14345525 chr3L 14345604 14345625 5 105 4.0 2.0 3.0 1.2 127 chr3L 14345498 intron fz + chr3L 14345562 intron fz + chr3L 14345625 intron fz + chr3L_5_14345001 chr3L_14345001 RAL-377 1984 chr3L 14411847 14411899 chr3L 14411946 14411998 17 99 3.5 3.0 3.2 4.0 151 chr3L 14411847 intron CG3919 + chr3L 14411922 intron CG3919 + chr3L 14411998 intron CG3919 + chr3L_17_14410001 chr3L_14410001 RAL-377 1985 chr3L 14432582 14432604 chr3L 14432766 14432788 8 184 6.0 3.5 4.8 1.4 206 chr3L 14432582 intron bbg - chr3L 14432685 intron bbg - chr3L 14432788 intron bbg - chr3L_8_14430001 chr3L_14430001 RAL-377 1986 chr3L 14441571 14441625 chr3L 14441740 14441794 21 168 3.5 1.5 2.5 6.0 223 chr3L 14441571 intron bbg - chr3L 14441682 intron bbg - chr3L 14441794 intron bbg - chr3L_21_14440001 chr3L_14440001 RAL-377 1987 chr3L 14444699 14444747 chr3L 14444894 14444942 17 194 4.5 5.0 4.8 2.9 243 chr3L 14444699 intron bbg - chr3L 14444820 intron bbg - chr3L 14444942 intron bbg - chr3L_17_14440001 chr3L_14440001 RAL-377 1988 chr3L 14455346 14455392 chr3L 14455447 14455490 9 100 5.0 0.0 2.5 2.6 144 chr3L 14455346 intron bbg - chr3L 14455418 intron bbg - chr3L 14455490 intron bbg - chr3L_9_14455001 chr3L_14455001 RAL-377 1989 chr3L 14462880 14462907 chr3L 14462988 14463015 10 108 0.0 4.0 2.0 3.3 135 chr3L 14462880 intron bbg - chr3L 14462948 intron bbg - chr3L 14463015 intron bbg - chr3L_10_14460001 chr3L_14460001 RAL-377 1990 chr3L 14468431 14468475 chr3L 14473657 14473701 copia 17 5225 4.5 5.0 4.8 2.9 5270 chr3L 14468431 intron bbg - chr3L 14471066 intron bbg - chr3L 14473701 intron bbg - chr3L_17_14470001 chr3L_14470001 RAL-377 1991 chr3L 14503040 14503089 chr3L 14503147 14503196 23 107 3.5 6.0 4.8 4.0 156 chr3L 14503040 intron bbg - chr3L 14503118 intron bbg - chr3L 14503196 intron bbg - chr3L_23_14500001 chr3L_14500001 RAL-377 1992 chr3L 14584140 14584188 chr3L 14584247 14584295 19 107 1.0 2.5 1.8 6.8 155 chr3L 14584140 intron HGTX - chr3L 14584218 intron HGTX - chr3L 14584295 intron HGTX - chr3L_19_14580001 chr3L_14580001 RAL-377 1993 chr3L 14633765 14633819 chr3L 14633881 14633935 23 115 2.5 4.0 3.2 5.5 170 chr3L 14633765 intron dlp + chr3L 14633850 intron dlp + chr3L 14633935 intron dlp + chr3L_23_14630001 chr3L_14630001 RAL-377 1994 chr3L 14721169 14721210 chr3L 14723032 14723070 Rt1c 10 1857 3.0 3.5 3.2 2.4 1901 chr3L 14721169 intron ome + chr3L 14722120 intron ome + chr3L 14723070 intron ome + chr3L_10_14720001 chr3L_14720001 RAL-377 1995 chr3L 14724832 14724837 chr3L 14724936 14724941 4 104 0.0 9.5 4.8 0.7 109 chr3L 14724832 intron ome + chr3L 14724886 intron ome + chr3L 14724941 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-377 1996 chr3L 14725582 14725623 chr3L 14728595 14728637 Doc 7 3014 0.0 7.5 3.8 1.5 3055 chr3L 14725582 intron ome + chr3L 14727110 intron ome + chr3L 14728637 intron ome + chr3L_7_14725001 chr3L_14725001 RAL-377 1997 chr3L 14740871 14740923 chr3L 14740980 14741032 20 109 6.0 5.0 5.5 3.1 161 chr3L 14740871 intron ome + chr3L 14740952 intron ome + chr3L 14741032 intron ome + chr3L_20_14740001 chr3L_14740001 RAL-377 1998 chr3L 14825147 14825158 chr3L 14832894 14832905 Stalker2 5 7747 0.0 5.5 2.8 1.3 7758 chr3L 14825147 intron CG17839 + chr3L 14829026 intron CG17839 + chr3L 14832905 intron CG17839 + chr3L_5_14825001 chr3L_14825001 RAL-377 1999 chr3L 14839028 14839048 chr3L 14839137 14839157 6 109 6.5 9.5 8.0 0.7 129 chr3L 14839028 intron CG17839 + chr3L 14839092 intron CG17839 + chr3L 14839157 intron CG17839 + chr3L_6_14835001 chr3L_14835001 RAL-377 2000 chr3L 14917654 14917691 chr3L 14917757 14917785 7 97 3.5 7.0 5.2 1.1 131 chr3L 14917654 intron DCX-EMAP + chr3L 14917720 intron DCX-EMAP + chr3L 14917785 intron DCX-EMAP + chr3L_7_14915001 chr3L_14915001 RAL-377 2001 chr3L 14933426 14933457 chr3L 14933528 14933559 14 102 5.5 5.5 5.5 2.2 133 chr3L 14933426 intron DCX-EMAP + chr3L 14933492 intron DCX-EMAP + chr3L 14933559 intron DCX-EMAP + chr3L_14_14930001 chr3L_14930001 RAL-377 2002 chr3L 14957965 14957971 chr3L 14958084 14958090 5 119 3.5 0.0 1.8 1.8 125 chr3L 14957965 intergenic not near genes chr3L 14958028 intergenic not near genes chr3L 14958090 intergenic not near genes chr3L_5_14955001 chr3L_14955001 RAL-377 2003 chr3L 14970741 14970764 chr3L 14971071 14971094 F-element 10 330 5.5 3.0 4.2 1.9 353 chr3L 14970741 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971094 intergenic not near genes chr3L_10_14970001 chr3L_14970001 RAL-377 2004 chr3L 14973616 14973656 chr3L 14973716 14973756 7 98 2.0 4.5 3.2 1.7 140 chr3L 14973616 intergenic Brd + chr3L 14973686 intergenic Brd + chr3L 14973756 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-377 2005 chr3L 15085036 15085076 chr3L 15086222 15086262 1360 11 1185 6.0 5.0 5.5 1.7 1226 chr3L 15085036 intron cp309 - chr3L 15085649 intron cp309 - chr3L 15086262 intron cp309 - chr3L_11_15085001 chr3L_15085001 RAL-377 2006 chr3L 15166957 15166999 chr3L 15167056 15167107 9 107 2.0 4.0 3.0 2.2 150 chr3L 15166957 intergenic not near genes chr3L 15167032 intergenic not near genes chr3L 15167107 intergenic not near genes chr3L_9_15165001 chr3L_15165001 RAL-377 2007 chr3L 15193674 15193725 chr3L 15193863 15193914 17 189 3.0 5.0 4.0 3.4 240 chr3L 15193674 intergenic not near genes chr3L 15193794 intergenic not near genes chr3L 15193914 intergenic not near genes chr3L_17_15190001 chr3L_15190001 RAL-377 2008 chr3L 15233535 15233580 chr3L 15233636 15233681 20 101 4.5 4.5 4.5 3.6 146 chr3L 15233535 intergenic not near genes chr3L 15233608 intergenic not near genes chr3L 15233681 intergenic not near genes chr3L_20_15230001 chr3L_15230001 RAL-377 2009 chr3L 15252190 15252213 chr3L 15252289 15252298 5 92 2.5 7.5 5.0 0.8 108 chr3L 15252190 intergenic not near genes chr3L 15252244 intergenic not near genes chr3L 15252298 intergenic not near genes chr3L_5_15250001 chr3L_15250001 RAL-377 2010 chr3L 5770755 5770757 chr3L 15253229 15253229 4 9482472 3.5 5.5 4.5 0.7 9482474 chr3L 5770755 intron scny + chr3L 10511992 intron A2bp1 + chr3L 15253229 intergenic not near genes chr3L_4_10510001 chr3L_10510001 RAL-377 2011 chr3L 15257413 15257693 chr3L 15257646 15257792 15 143 0.0 0.0 0.0 15.0 379 chr3L 15257413 intergenic not near genes chr3L 15257602 intergenic not near genes chr3L 15257792 intergenic not near genes chr3L_15_15255001 chr3L_15255001 RAL-377 2012 chr3L 15286727 15286773 chr3L 15286828 15286869 14 99 3.0 3.0 3.0 3.5 142 chr3L 15286727 intergenic not near genes chr3L 15286798 intergenic not near genes chr3L 15286869 intergenic not near genes chr3L_14_15285001 chr3L_15285001 RAL-377 2013 chr3L 15295746 15295796 chr3L 15298609 15298659 gypsy5 26 2863 4.5 7.5 6.0 3.7 2913 chr3L 15295746 intergenic not near genes chr3L 15297202 intergenic not near genes chr3L 15298659 intergenic Best4 + chr3L_26_15295001 chr3L_15295001 RAL-377 2014 chr3L 15384943 15384984 chr3L 15385084 15385132 12 145 5.5 1.5 3.5 2.7 189 chr3L 15384943 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385132 intergenic not near genes chr3L_12_15385001 chr3L_15385001 RAL-377 2015 chr3L 15393641 15393693 chr3L 15393863 15393915 10 222 3.0 2.0 2.5 2.9 274 chr3L 15393641 intergenic not near genes chr3L 15393778 intergenic not near genes chr3L 15393915 intergenic not near genes chr3L_10_15390001 chr3L_15390001 RAL-377 2016 chr3L 15399823 15399862 chr3L 15399991 15400033 14 171 4.0 2.0 3.0 3.5 210 chr3L 15399823 intergenic not near genes chr3L 15399928 intergenic not near genes chr3L 15400033 intergenic not near genes chr3L_14_15395001 chr3L_15395001 RAL-377 2017 chr3L 15406004 15406048 chr3L 15406106 15406150 4 102 1.5 4.0 2.8 1.1 146 chr3L 15406004 intergenic not near genes chr3L 15406077 intergenic not near genes chr3L 15406150 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-377 2018 chr3L 15423740 15423745 chr3L 15426604 15426608 opus 7 2864 7.5 3.0 5.2 1.1 2868 chr3L 15423740 intergenic not near genes chr3L 15425174 intergenic not near genes chr3L 15426608 intergenic not near genes chr3L_7_15425001 chr3L_15425001 RAL-377 2019 chr3L 15423763 15423782 chr3L 15426627 15426646 opus 7 2864 4.5 7.5 6.0 1.0 2883 chr3L 15423763 intergenic not near genes chr3L 15425204 intergenic not near genes chr3L 15426646 intergenic not near genes chr3L_7_15425001 chr3L_15425001 RAL-377 2020 chr3L 15444636 15444685 chr3L 15444749 15444762 11 108 3.5 4.0 3.8 2.3 126 chr3L 15444636 intergenic not near genes chr3L 15444699 intergenic not near genes chr3L 15444762 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-377 2021 chr3L 15466021 15466137 chr3L 15466123 15466253 9 111 0.0 0.0 0.0 9.0 232 chr3L 15466021 intergenic not near genes chr3L 15466137 intergenic not near genes chr3L 15466253 intergenic not near genes chr3L_9_15465001 chr3L_15465001 RAL-377 2022 chr3L 15474672 15474675 chr3L 15474831 15474834 4 159 4.0 5.5 4.8 0.7 162 chr3L 15474672 intergenic not near genes chr3L 15474753 intergenic not near genes chr3L 15474834 intergenic not near genes chr3L_4_15470001 chr3L_15470001 RAL-377 2023 chr3L 15493296 15493347 chr3L 15493411 15493462 5 115 1.5 0.0 0.8 2.8 166 chr3L 15493296 exon CG12355 - chr3L 15493379 intron CG12355 - chr3L 15493462 intron CG12355 - chr3L_5_15490001 chr3L_15490001 RAL-377 2024 chr3L 15691395 15691447 chr3L 15691497 15691503 21 96 0.0 3.5 1.8 7.5 108 chr3L 15691395 intron CG34451 - chr3L 15691449 intron CG34451 - chr3L 15691503 intron CG34451 - chr3L_21_15690001 chr3L_15690001 RAL-377 2025 chr3L 15737369 15737399 chr3L 15737479 15737509 10 110 3.0 4.0 3.5 2.2 140 chr3L 15737369 intergenic not near genes chr3L 15737439 intergenic not near genes chr3L 15737509 intergenic not near genes chr3L_10_15735001 chr3L_15735001 RAL-377 2026 chr3L 15744587 15744617 chr3L 15745041 15745071 10 454 26.0 19.5 22.8 0.4 484 chr3L 15744587 intergenic not near genes chr3L 15744829 intergenic not near genes chr3L 15745071 intergenic not near genes chr3L_10_15740001 chr3L_15740001 RAL-377 2027 chr3L 15756859 15756860 chr3L 15756962 15756963 4 103 9.0 0.0 4.5 0.7 104 chr3L 15756859 intergenic not near genes chr3L 15756911 intergenic not near genes chr3L 15756963 intergenic not near genes chr3L_4_15755001 chr3L_15755001 RAL-377 2028 chr3L 15756864 15756899 chr3L 15756961 15756968 7 88 5.5 0.0 2.8 1.8 104 chr3L 15756864 intergenic not near genes chr3L 15756916 intergenic not near genes chr3L 15756968 intergenic not near genes chr3L_7_15755001 chr3L_15755001 RAL-377 2029 chr3L 15782560 15782580 chr3L 15782682 15782702 4 122 0.0 5.0 2.5 1.1 142 chr3L 15782560 intergenic not near genes chr3L 15782631 intergenic not near genes chr3L 15782702 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-377 2030 chr3L 15819377 15819411 chr3L 15819489 15819523 14 111 5.0 6.5 5.8 2.1 146 chr3L 15819377 3` UTR Dcp2 - chr3L 15819450 3` UTR Dcp2 - chr3L 15819523 3` UTR Dcp2 - chr3L_14_15815001 chr3L_15815001 RAL-377 2031 chr3L 15833799 15833853 chr3L 15834018 15834072 21 219 39.0 42.0 40.5 0.5 273 chr3L 15833799 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834072 3` UTR CG18081 - chr3L_21_15830001 chr3L_15830001 RAL-377 2032 chr3L 15871572 15871615 chr3L 15871676 15871719 13 104 7.5 5.0 6.2 1.8 147 chr3L 15871572 intron pHCl - chr3L 15871646 intron pHCl - chr3L 15871719 intron pHCl - chr3L_13_15870001 chr3L_15870001 RAL-377 2033 chr3L 15918080 15918135 chr3L 15918196 15918246 19 115 6.0 5.5 5.8 2.8 166 chr3L 15918080 intron sff - chr3L 15918163 intron sff - chr3L 15918246 intron sff - chr3L_19_15915001 chr3L_15915001 RAL-377 2034 chr3L 15929175 15929226 chr3L 15938342 15938393 roo 17 9167 5.0 3.5 4.2 3.3 9218 chr3L 15929175 intron Pka-C3 - chr3L 15933784 intron Pka-C3 - chr3L 15938393 intron Pka-C3 - chr3L_17_15930001 chr3L_15930001 RAL-377 2035 chr3L 15946486 15946537 chr3L 15946592 15946643 5 106 1.5 0.0 0.8 2.8 157 chr3L 15946486 intron Pka-C3 - chr3L 15946564 intron Pka-C3 - chr3L 15946643 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-377 2036 chr3L 16070721 16070762 chr3L 16070818 16070859 11 97 7.0 2.5 4.8 1.9 138 chr3L 16070721 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070859 exon Mbs + chr3L_11_16070001 chr3L_16070001 RAL-377 2037 chr3L 16158803 16158836 chr3L 16158908 16158938 11 104 1.5 4.5 3.0 2.8 135 chr3L 16158803 intron CG5151 - chr3L 16158870 intron CG5151 - chr3L 16158938 intron CG5151 - chr3L_11_16155001 chr3L_16155001 RAL-377 2038 chr3L 16184086 16184132 chr3L 16188925 16188960 X-element 10 4836 0.5 1.5 1.0 5.0 4874 chr3L 16184086 intergenic not near genes chr3L 16186523 intergenic not near genes chr3L 16188960 intergenic not near genes chr3L_10_16185001 chr3L_16185001 RAL-377 2039 chr3L 16212792 16212823 chr3L 16212903 16212934 8 111 11.0 2.0 6.5 1.1 142 chr3L 16212792 intergenic CG13073 - chr3L 16212863 intergenic CG13073 - chr3L 16212934 intergenic CG13073 - chr3L_8_16210001 chr3L_16210001 RAL-377 2040 chr3L 16279086 16279098 chr3L 16279187 16279199 4 101 7.0 3.0 5.0 0.7 113 chr3L 16279086 intron CG13050 - chr3L 16279142 intron CG13050 - chr3L 16279199 intron CG13050 - chr3L_4_16275001 chr3L_16275001 RAL-377 2041 chr3L 16301265 16301289 chr3L 16301371 16301417 9 121 0.5 3.0 1.8 3.2 152 chr3L 16301265 intergenic CG4982 + chr3L 16301341 intergenic CG4982 + chr3L 16301417 intergenic CG4982 + chr3L_9_16300001 chr3L_16300001 RAL-377 2042 chr3L 16322810 16322857 chr3L 16322920 16322966 23 108 2.5 6.0 4.2 4.4 156 chr3L 16322810 intergenic not near genes chr3L 16322888 intergenic not near genes chr3L 16322966 intergenic not near genes chr3L_23_16320001 chr3L_16320001 RAL-377 2043 chr3L 16359940 16360005 chr3L 16360230 16360278 4 276 0.0 7.0 3.5 0.9 338 chr3L 16359940 intron CG45057 - chr3L 16360109 intron CG45057 - chr3L 16360278 intron CG45057 - chr3L_4_16360001 chr3L_16360001 RAL-377 2044 chr3L 16360873 16360888 chr3L 16360970 16360986 5 96 9.5 5.0 7.2 0.6 113 chr3L 16360873 intron CG45057 - chr3L 16360930 intron CG45057 - chr3L 16360986 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-377 2045 chr3L 16360895 16360917 chr3L 16360966 16360986 7 87 4.5 4.0 4.2 1.3 91 chr3L 16360895 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360986 intron CG45057 - chr3L_7_16360001 chr3L_16360001 RAL-377 2046 chr3L 16404971 16404978 chr3L 16405097 16405104 4 126 14.5 4.5 9.5 0.4 133 chr3L 16404971 3` UTR fax - chr3L 16405038 3` UTR fax - chr3L 16405104 3` UTR fax - chr3L_4_16405001 chr3L_16405001 RAL-377 2047 chr3L 16431809 16431862 chr3L 16431923 16431977 10 115 5.0 0.0 2.5 2.9 168 chr3L 16431809 intron,intron CG33158 +,dsx-c73A - chr3L 16431893 intron,intron CG33158 +,dsx-c73A - chr3L 16431977 intron,intron CG33158 +,dsx-c73A - chr3L_10_16430001 chr3L_16430001 RAL-377 2048 chr3L 16437048 16437103 chr3L 16437147 16437209 18 104 3.0 0.0 1.5 7.2 161 chr3L 16437048 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437209 intron,intron CG33158 +,dsx-c73A - chr3L_18_16435001 chr3L_16435001 RAL-377 2049 chr3L 16438292 16438335 chr3L 16438393 16438430 14 97 7.0 2.5 4.8 2.4 138 chr3L 16438292 intron,intron CG33158 +,dsx-c73A - chr3L 16438361 intron,intron CG33158 +,dsx-c73A - chr3L 16438430 intron,intron CG33158 +,dsx-c73A - chr3L_14_16435001 chr3L_16435001 RAL-377 2050 chr3L 16443827 16443872 chr3L 16446187 16446232 Doc 13 2359 7.5 3.5 5.5 2.0 2405 chr3L 16443827 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446232 intron,intron CG33158 +,dsx-c73A - chr3L_13_16445001 chr3L_16445001 RAL-377 2051 chr3L 16450003 16450050 chr3L 16450108 16450155 13 105 0.0 2.5 1.2 5.9 152 chr3L 16450003 intron,intron CG33158 +,dsx-c73A - chr3L 16450079 intron,intron CG33158 +,dsx-c73A - chr3L 16450155 intron,exon CG33158 +,dsx-c73A - chr3L_13_16450001 chr3L_16450001 RAL-377 2052 chr3L 16493958 16494012 chr3L 16494495 16494523 jockey 20 532 5.0 7.0 6.0 2.9 565 chr3L 16493958 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494240 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494523 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_20_16490001 chr3L_16490001 RAL-377 2053 chr3L 16540034 16540086 chr3L 16540142 16540193 18 107 4.0 6.0 5.0 3.0 159 chr3L 16540034 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540193 intron CG43373 - chr3L_18_16540001 chr3L_16540001 RAL-377 2054 chr3L 16616514 16616540 chr3L 16621856 16621876 297 7 5343 6.0 6.5 6.2 1.0 5362 chr3L 16616514 3` UTR Abl - chr3L 16619195 3` UTR Abl - chr3L 16621876 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-377 2055 chr3L 16638647 16638672 chr3L 16638887 16638913 8 238 3.0 2.5 2.8 2.1 266 chr3L 16638647 intron Abl - chr3L 16638780 intron Abl - chr3L 16638913 intron Abl - chr3L_8_16635001 chr3L_16635001 RAL-377 2056 chr3L 16646407 16646452 chr3L 16648322 16648367 20 1915 46.0 40.0 43.0 0.5 1960 chr3L 16646407 intron Abl - chr3L 16647387 5` UTR Abl - chr3L 16648367 intergenic Baldspot -,Abl - chr3L_20_16645001 chr3L_16645001 RAL-377 2057 chr3L 16684002 16684043 chr3L 16689243 16689284 copia 15 5241 6.5 4.5 5.5 2.3 5282 chr3L 16684002 intron,intron Lasp -,CG43954 - chr3L 16686643 intron,intron Lasp -,CG43954 - chr3L 16689284 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_15_16685001 chr3L_16685001 RAL-377 2058 chr3L 16714825 16714873 chr3L 16714929 16714977 25 104 3.0 8.0 5.5 3.8 152 chr3L 16714825 intron Dab + chr3L 16714901 intron Dab + chr3L 16714977 intron Dab + chr3L_25_16710001 chr3L_16710001 RAL-377 2059 chr3L 16749187 16749235 chr3L 16749282 16749331 19 91 4.5 4.0 4.2 3.7 144 chr3L 16749187 intergenic not near genes chr3L 16749259 intergenic not near genes chr3L 16749331 intergenic not near genes chr3L_19_16745001 chr3L_16745001 RAL-377 2060 chr3L 16757621 16757669 chr3L 16757731 16757779 20 110 3.5 3.5 3.5 4.4 158 chr3L 16757621 intergenic not near genes chr3L 16757700 intergenic not near genes chr3L 16757779 intergenic not near genes chr3L_20_16755001 chr3L_16755001 RAL-377 2061 chr3L 16772480 16772487 chr3L 16772585 16772597 4 109 12.0 3.0 7.5 0.5 117 chr3L 16772480 intron Nrt + chr3L 16772538 intron Nrt + chr3L 16772597 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-377 2062 chr3L 16772488 16772513 chr3L 16772583 16772623 17 109 6.0 3.0 4.5 3.1 135 chr3L 16772488 intron Nrt + chr3L 16772556 intron Nrt + chr3L 16772623 intron Nrt + chr3L_17_16770001 chr3L_16770001 RAL-377 2063 chr3L 16808026 16808074 chr3L 16808122 16808173 8 96 4.0 0.5 2.2 2.5 147 chr3L 16808026 intron nudC + chr3L 16808100 intron nudC + chr3L 16808173 intron nudC + chr3L_8_16805001 chr3L_16805001 RAL-377 2064 chr3L 16817856 16817909 chr3L 16818015 16818060 16 157 2.0 4.0 3.0 4.0 204 chr3L 16817856 intron,intron nudC +,CG13024 - chr3L 16817958 intron,intron nudC +,CG13024 - chr3L 16818060 intron,intron nudC +,CG13024 - chr3L_16_16815001 chr3L_16815001 RAL-377 2065 chr3L 16818731 16818761 chr3L 16818827 16818857 16 96 7.5 5.5 6.5 2.1 126 chr3L 16818731 intron,intron nudC +,CG13024 - chr3L 16818794 intron,intron nudC +,CG13024 - chr3L 16818857 intron,intron nudC +,CG13024 - chr3L_16_16815001 chr3L_16815001 RAL-377 2066 chr3L 16830766 16830785 chr3L 16830861 16830885 6 98 8.0 3.0 5.5 0.9 119 chr3L 16830766 intergenic not near genes chr3L 16830826 intergenic not near genes chr3L 16830885 intergenic not near genes chr3L_6_16830001 chr3L_16830001 RAL-377 2067 chr3L 16845007 16845043 chr3L 16845140 16845176 14 132 1.5 9.0 5.2 2.3 169 chr3L 16845007 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845176 intergenic CG9669 -,CG9715 + chr3L_14_16845001 chr3L_16845001 RAL-377 2068 chr3L 16861009 16861052 chr3L 16861130 16861174 15 122 1.0 5.0 3.0 3.8 165 chr3L 16861009 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861174 intron,exon Rh4 -,CG13029 + chr3L_15_16860001 chr3L_16860001 RAL-377 2069 chr3L 16873340 16873357 chr3L 16873465 16873482 6 125 2.5 1.0 1.8 2.1 142 chr3L 16873340 intron Lmpt + chr3L 16873411 intron Lmpt + chr3L 16873482 intron Lmpt + chr3L_6_16870001 chr3L_16870001 RAL-377 2070 chr3L 16921827 16921839 chr3L 16921923 16921935 9 96 6.5 14.5 10.5 0.8 108 chr3L 16921827 3` UTR Lmpt + chr3L 16921881 3` UTR Lmpt + chr3L 16921935 3` UTR Lmpt + chr3L_9_16920001 chr3L_16920001 RAL-377 2071 chr3L 16941380 16941410 chr3L 16941501 16941531 11 121 1.5 0.0 0.8 6.1 151 chr3L 16941380 intron Cpr73D - chr3L 16941456 intron Cpr73D - chr3L 16941531 intron Cpr73D - chr3L_11_16940001 chr3L_16940001 RAL-377 2072 chr3L 16945722 16945759 chr3L 16954887 16954901 roo 16 9166 3.5 3.5 3.5 3.6 9179 chr3L 16945722 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954901 5` UTR Nc73EF + chr3L_16_16950001 chr3L_16950001 RAL-377 2073 chr3L 17027150 17027189 chr3L 17027262 17027301 13 112 1.5 5.5 3.5 2.9 151 chr3L 17027150 intergenic Fit2 +,CG7730 + chr3L 17027226 intergenic Fit2 +,CG7730 + chr3L 17027301 intergenic Fit2 +,CG7730 + chr3L_13_17025001 chr3L_17025001 RAL-377 2074 chr3L 17034920 17034967 chr3L 17035128 17035175 G2 13 208 3.0 5.0 4.0 2.6 255 chr3L 17034920 intergenic not near genes chr3L 17035048 intergenic not near genes chr3L 17035175 intergenic beg + chr3L_13_17035001 chr3L_17035001 RAL-377 2075 chr3L 17084988 17085033 chr3L 17094157 17094202 roo 20 9169 5.5 6.5 6.0 2.9 9214 chr3L 17084988 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094202 intron Rbp6 - chr3L_20_17085001 chr3L_17085001 RAL-377 2076 chr3L 17108484 17108505 chr3L 17108557 17108601 6 88 5.5 4.0 4.8 1.0 117 chr3L 17108484 intron Rbp6 - chr3L 17108542 intron Rbp6 - chr3L 17108601 intron Rbp6 - chr3L_6_17105001 chr3L_17105001 RAL-377 2077 chr3L 17237366 17237412 chr3L 17237538 17237584 11 172 3.0 0.0 1.5 4.4 218 chr3L 17237366 intron Rbp6 - chr3L 17237475 intron Rbp6 - chr3L 17237584 intron Rbp6 - chr3L_11_17235001 chr3L_17235001 RAL-377 2078 chr3L 17268975 17269023 chr3L 17269087 17269135 17 111 3.0 6.0 4.5 3.1 160 chr3L 17268975 intergenic not near genes chr3L 17269055 intergenic not near genes chr3L 17269135 intergenic not near genes chr3L_17_17265001 chr3L_17265001 RAL-377 2079 chr3L 17282233 17282235 chr3L 17282329 17282332 4 97 4.5 5.0 4.8 0.7 99 chr3L 17282233 intergenic not near genes chr3L 17282282 intergenic not near genes chr3L 17282332 intergenic not near genes chr3L_4_17280001 chr3L_17280001 RAL-377 2080 chr3L 17331050 17331094 chr3L 17331160 17331203 9 110 4.5 6.0 5.2 1.5 153 chr3L 17331050 intergenic not near genes chr3L 17331126 intergenic not near genes chr3L 17331203 intergenic not near genes chr3L_9_17330001 chr3L_17330001 RAL-377 2081 chr3L 17367417 17367457 chr3L 17367530 17367571 16 114 3.5 11.5 7.5 1.9 154 chr3L 17367417 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367571 intergenic Cad74A -,CR45688 + chr3L_16_17365001 chr3L_17365001 RAL-377 2082 chr3L 17428933 17428956 chr3L 17429039 17429062 12 106 3.0 5.5 4.2 2.3 129 chr3L 17428933 intergenic CG32174 -,frc -,CG33052 - chr3L 17428998 3` UTR,3` UTR CG32174 -,frc - chr3L 17429062 3` UTR,3` UTR CG32174 -,frc - chr3L_12_17425001 chr3L_17425001 RAL-377 2083 chr3L 17516961 17517010 chr3L 17524539 17524579 412 14 7572 4.0 5.0 4.5 2.5 7618 chr3L 17516961 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524579 3` UTR CG7564 + chr3L_14_17520001 chr3L_17520001 RAL-377 2084 chr3L 17586948 17586964 chr3L 17587102 17587118 7 154 9.0 2.0 5.5 1.1 170 chr3L 17586948 intron Eip74EF - chr3L 17587033 intron Eip74EF - chr3L 17587118 intron Eip74EF - chr3L_7_17585001 chr3L_17585001 RAL-377 2085 chr3L 17586968 17586999 chr3L 17587101 17587153 15 152 3.0 2.0 2.5 4.3 185 chr3L 17586968 intron Eip74EF - chr3L 17587060 intron Eip74EF - chr3L 17587153 intron Eip74EF - chr3L_15_17585001 chr3L_17585001 RAL-377 2086 chr3L 17630854 17630892 chr3L 17630958 17630995 19 104 4.0 5.0 4.5 3.5 141 chr3L 17630854 3` UTR CG7510 + chr3L 17630924 3` UTR CG7510 + chr3L 17630995 intergenic CG7510 +,CR44566 + chr3L_19_17630001 chr3L_17630001 RAL-377 2087 chr3L 17659704 17659754 chr3L 17659800 17659851 18 97 5.5 3.0 4.2 3.5 147 chr3L 17659704 intergenic Crtc - chr3L 17659778 intergenic Crtc - chr3L 17659851 3` UTR Crtc - chr3L_18_17655001 chr3L_17655001 RAL-377 2088 chr3L 17672032 17672046 chr3L 17672170 17672184 5 137 4.0 8.5 6.2 0.7 152 chr3L 17672032 intron CG34251 + chr3L 17672108 intron CG34251 + chr3L 17672184 intron CG34251 + chr3L_5_17670001 chr3L_17670001 RAL-377 2089 chr3L 17678880 17678898 chr3L 17678984 17679002 5 104 3.0 0.0 1.5 2.0 122 chr3L 17678880 intron CG34251 + chr3L 17678941 intron CG34251 + chr3L 17679002 intron CG34251 + chr3L_5_17675001 chr3L_17675001 RAL-377 2090 chr3L 17730829 17730880 chr3L 17738179 17738230 mdg1 19 7349 5.0 3.0 4.0 3.8 7401 chr3L 17730829 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738230 intron Ccn + chr3L_19_17730001 chr3L_17730001 RAL-377 2091 chr3L 17787670 17787694 chr3L 17787783 17787807 7 113 8.0 7.5 7.8 0.8 137 chr3L 17787670 intergenic not near genes chr3L 17787738 intergenic not near genes chr3L 17787807 intergenic not near genes chr3L_7_17785001 chr3L_17785001 RAL-377 2092 chr3L 17790599 17790624 chr3L 17790884 17790909 14 283 5.5 9.5 7.5 1.6 310 chr3L 17790599 intergenic CG42815 - chr3L 17790754 intergenic CG42815 - chr3L 17790909 intergenic CG42815 - chr3L_14_17790001 chr3L_17790001 RAL-377 2093 chr3L 17799794 17799842 chr3L 17801603 17801651 S-element 18 1808 8.5 8.0 8.2 2.0 1857 chr3L 17799794 intron NUCB1 - chr3L 17800722 intron NUCB1 - chr3L 17801651 intron NUCB1 - chr3L_18_17800001 chr3L_17800001 RAL-377 2094 chr3L 17834304 17834356 chr3L 17834487 17834540 17 183 0.5 5.0 2.8 4.5 236 chr3L 17834304 intron Grd + chr3L 17834422 intron Grd + chr3L 17834540 intron Grd + chr3L_17_17830001 chr3L_17830001 RAL-377 2095 chr3L 17837605 17837656 chr3L 17837713 17837764 15 107 0.0 6.0 3.0 3.8 159 chr3L 17837605 exon Grd + chr3L 17837684 intron Grd + chr3L 17837764 exon Grd + chr3L_15_17835001 chr3L_17835001 RAL-377 2096 chr3L 17918352 17918404 chr3L 17921175 17921227 opus 9 2822 3.0 4.5 3.8 1.9 2875 chr3L 17918352 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921227 intergenic not near genes chr3L_9_17915001 chr3L_17915001 RAL-377 2097 chr3L 17929150 17929199 chr3L 17929460 17929509 14 315 40.0 29.5 34.8 0.4 359 chr3L 17929150 intergenic not near genes chr3L 17929330 intergenic not near genes chr3L 17929509 intergenic not near genes chr3L_14_17925001 chr3L_17925001 RAL-377 2098 chr3L 18029959 18029981 chr3L 18030056 18030062 6 94 3.0 0.0 1.5 2.4 103 chr3L 18029959 intron Eip75B - chr3L 18030010 intron Eip75B - chr3L 18030062 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-377 2099 chr3L 18045019 18045043 chr3L 18045115 18045139 7 96 1.0 9.0 5.0 1.2 120 chr3L 18045019 intron Eip75B - chr3L 18045079 intron Eip75B - chr3L 18045139 intron Eip75B - chr3L_7_18045001 chr3L_18045001 RAL-377 2100 chr3L 18047688 18047735 chr3L 18056765 18056812 roo 22 9076 5.0 7.0 6.0 3.1 9124 chr3L 18047688 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056812 intron Eip75B - chr3L_22_18050001 chr3L_18050001 RAL-377 2101 chr3L 18064041 18064076 chr3L 18064147 18064181 12 106 0.5 3.0 1.8 4.3 140 chr3L 18064041 intron Eip75B - chr3L 18064111 intron Eip75B - chr3L 18064181 intron Eip75B - chr3L_12_18060001 chr3L_18060001 RAL-377 2102 chr3L 18106237 18106276 chr3L 18106376 18106415 7 139 1.5 0.0 0.8 3.9 178 chr3L 18106237 intergenic CG13698 -,mRpS26 + chr3L 18106326 intergenic CG13698 -,mRpS26 + chr3L 18106415 intergenic mRpS26 +,CG13698 - chr3L_7_18105001 chr3L_18105001 RAL-377 2103 chr3L 18118192 18118239 chr3L 18118290 18118337 12 96 2.0 3.0 2.5 3.4 145 chr3L 18118192 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118337 3` UTR,intron CG32195 +,CG7341 + chr3L_12_18115001 chr3L_18115001 RAL-377 2104 chr3L 18133000 18133046 chr3L 18133110 18133156 19 110 2.0 0.5 1.2 8.6 156 chr3L 18133000 intergenic Cyp312a1 - chr3L 18133078 intergenic Cyp312a1 - chr3L 18133156 intergenic Cyp312a1 - chr3L_19_18130001 chr3L_18130001 RAL-377 2105 chr3L 18152712 18152722 chr3L 18152843 18152853 7 131 3.0 1.5 2.2 2.2 141 chr3L 18152712 intron CG7330 + chr3L 18152782 intron CG7330 + chr3L 18152853 intron CG7330 + chr3L_7_18150001 chr3L_18150001 RAL-377 2106 chr3L 18172675 18172704 chr3L 18172770 18172800 12 96 8.0 6.0 7.0 1.5 125 chr3L 18172675 intron W - chr3L 18172738 intron W - chr3L 18172800 intron W - chr3L_12_18170001 chr3L_18170001 RAL-377 2107 chr3L 18203577 18203627 chr3L 18203692 18203730 5 108 8.0 0.0 4.0 1.0 153 chr3L 18203577 3` UTR CG7320 + chr3L 18203654 intergenic CG7320 + chr3L 18203730 intergenic CG7320 + chr3L_5_18200001 chr3L_18200001 RAL-377 2108 chr3L 18210723 18210750 chr3L 18210819 18210855 7 99 2.5 0.0 1.2 3.2 132 chr3L 18210723 intergenic not near genes chr3L 18210789 intergenic not near genes chr3L 18210855 intergenic not near genes chr3L_7_18210001 chr3L_18210001 RAL-377 2109 chr3L 18221085 18221100 chr3L 18221186 18221201 7 101 0.5 0.0 0.2 5.8 116 chr3L 18221085 intergenic not near genes chr3L 18221143 intergenic not near genes chr3L 18221201 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-377 2110 chr3L 18223147 18223184 chr3L 18223250 18223299 13 104 4.0 0.0 2.0 4.3 152 chr3L 18223147 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223299 intergenic not near genes chr3L_13_18220001 chr3L_18220001 RAL-377 2111 chr3L 18248952 18248967 chr3L 18249070 18249081 7 117 3.0 4.5 3.8 1.5 129 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249081 intergenic not near genes chr3L_7_18245001 chr3L_18245001 RAL-377 2112 chr3L 18262456 18262488 chr3L 18262559 18262591 10 103 5.0 4.0 4.5 1.8 135 chr3L 18262456 intergenic not near genes chr3L 18262524 intergenic not near genes chr3L 18262591 intergenic not near genes chr3L_10_18260001 chr3L_18260001 RAL-377 2113 chr3L 18342060 18342101 chr3L 18342160 18342200 5 100 0.0 5.5 2.8 1.3 140 chr3L 18342060 intergenic not near genes chr3L 18342130 intergenic not near genes chr3L 18342200 intergenic not near genes chr3L_5_18340001 chr3L_18340001 RAL-377 2114 chr3L 18352210 18352246 chr3L 18352810 18352836 8 598 5.5 3.5 4.5 1.5 626 chr3L 18352210 intergenic not near genes chr3L 18352523 intergenic not near genes chr3L 18352836 intergenic not near genes chr3L_8_18350001 chr3L_18350001 RAL-377 2115 chr3L 18375192 18375205 chr3L 18375291 18375298 4 96 0.0 0.0 0.0 4.0 106 chr3L 18375192 intergenic not near genes chr3L 18375245 intergenic not near genes chr3L 18375298 intergenic not near genes chr3L_4_18375001 chr3L_18375001 RAL-377 2116 chr3L 18383080 18383134 chr3L 18383183 18383235 10 102 0.0 1.0 0.5 6.7 155 chr3L 18383080 intergenic not near genes chr3L 18383158 intergenic not near genes chr3L 18383235 intergenic not near genes chr3L_10_18380001 chr3L_18380001 RAL-377 2117 chr3L 18408746 18408761 chr3L 18408852 18408867 4 106 0.0 12.5 6.2 0.6 121 chr3L 18408746 intergenic not near genes chr3L 18408806 intergenic not near genes chr3L 18408867 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-377 2118 chr3L 18438268 18438318 chr3L 18438364 18438414 10 96 3.5 4.0 3.8 2.1 146 chr3L 18438268 intergenic skl - chr3L 18438341 intergenic skl - chr3L 18438414 intergenic skl - chr3L_10_18435001 chr3L_18435001 RAL-377 2119 chr3L 18448597 18448615 chr3L 18448709 18448727 7 112 5.0 2.5 3.8 1.5 130 chr3L 18448597 intergenic not near genes chr3L 18448662 intergenic not near genes chr3L 18448727 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-377 2120 chr3L 18456252 18456302 chr3L 18456360 18456410 14 108 1.5 2.0 1.8 5.0 158 chr3L 18456252 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456410 3` UTR CR44670 - chr3L_14_18455001 chr3L_18455001 RAL-377 2121 chr3L 18464482 18464511 chr3L 18464574 18464617 7 96 4.5 3.5 4.0 1.4 135 chr3L 18464482 intergenic not near genes chr3L 18464550 intergenic not near genes chr3L 18464617 intergenic not near genes chr3L_7_18460001 chr3L_18460001 RAL-377 2122 chr3L 18506112 18506159 chr3L 18509594 18509642 F-element 7 3478 3.0 4.5 3.8 1.5 3530 chr3L 18506112 intergenic not near genes chr3L 18507877 intergenic not near genes chr3L 18509642 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-377 2123 chr3L 18528611 18528661 chr3L 18537792 18537842 roo 17 9181 6.0 3.5 4.8 2.9 9231 chr3L 18528611 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537842 intergenic not near genes chr3L_17_18530001 chr3L_18530001 RAL-377 2124 chr3L 18546699 18546725 chr3L 18546803 18546838 11 111 3.0 2.5 2.8 2.9 139 chr3L 18546699 intergenic not near genes chr3L 18546768 intergenic not near genes chr3L 18546838 intergenic not near genes chr3L_11_18545001 chr3L_18545001 RAL-377 2125 chr3L 18551614 18551630 chr3L 18551961 18551977 5 347 4.5 2.5 3.5 1.1 363 chr3L 18551614 intergenic not near genes chr3L 18551796 intergenic not near genes chr3L 18551977 intergenic not near genes chr3L_5_18550001 chr3L_18550001 RAL-377 2126 chr3L 18551632 18551655 chr3L 18551959 18552002 6 344 0.5 2.5 1.5 2.4 370 chr3L 18551632 intergenic not near genes chr3L 18551817 intergenic not near genes chr3L 18552002 intergenic not near genes chr3L_6_18550001 chr3L_18550001 RAL-377 2127 chr3L 18593929 18593981 chr3L 18595929 18595981 Doc 19 1998 4.5 4.0 4.2 3.7 2052 chr3L 18593929 intergenic term - chr3L 18594955 intergenic not near genes chr3L 18595981 intergenic CR45389 + chr3L_19_18590001 chr3L_18590001 RAL-377 2128 chr3L 18638562 18638578 chr3L 18638676 18638692 6 114 11.5 5.5 8.5 0.6 130 chr3L 18638562 intron MYPT-75D + chr3L 18638627 intron MYPT-75D + chr3L 18638692 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-377 2129 chr3L 18638579 18638607 chr3L 18638673 18638721 9 112 3.5 5.5 4.5 1.6 142 chr3L 18638579 intron MYPT-75D + chr3L 18638650 intron MYPT-75D + chr3L 18638721 intron MYPT-75D + chr3L_9_18635001 chr3L_18635001 RAL-377 2130 chr3L 18645268 18645312 chr3L 18645387 18645431 12 118 4.5 1.5 3.0 3.0 163 chr3L 18645268 intron MYPT-75D + chr3L 18645350 intron MYPT-75D + chr3L 18645431 intron MYPT-75D + chr3L_12_18645001 chr3L_18645001 RAL-377 2131 chr3L 18656165 18656219 chr3L 18656270 18656304 7 102 2.0 2.0 2.0 2.3 139 chr3L 18656165 intron MYPT-75D + chr3L 18656234 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-377 2132 chr3L 18710771 18710792 chr3L 18718741 18718762 Stalker2 10 7970 3.0 1.0 2.0 3.3 7991 chr3L 18710771 intergenic not near genes chr3L 18714766 intergenic not near genes chr3L 18718762 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-377 2133 chr3L 18721767 18721800 chr3L 18721878 18721911 14 111 3.0 5.5 4.2 2.7 144 chr3L 18721767 intergenic CG12477 - chr3L 18721839 intergenic CG12477 - chr3L 18721911 3` UTR CG12477 - chr3L_14_18720001 chr3L_18720001 RAL-377 2134 chr3L 18725246 18725278 chr3L 18725572 18725600 12 323 6.0 6.5 6.2 1.7 354 chr3L 18725246 intergenic not near genes chr3L 18725423 intergenic not near genes chr3L 18725600 intergenic not near genes chr3L_12_18725001 chr3L_18725001 RAL-377 2135 chr3L 18733572 18733611 chr3L 18733782 18733821 9 205 1.0 2.0 1.5 3.6 249 chr3L 18733572 intergenic not near genes chr3L 18733696 intergenic not near genes chr3L 18733821 intergenic not near genes chr3L_9_18730001 chr3L_18730001 RAL-377 2136 chr3L 18737308 18737356 chr3L 18737441 18737489 14 132 4.5 4.0 4.2 2.7 181 chr3L 18737308 intergenic not near genes chr3L 18737398 intergenic not near genes chr3L 18737489 intergenic not near genes chr3L_14_18735001 chr3L_18735001 RAL-377 2137 chr3L 18753527 18753563 chr3L 18753629 18753665 18 102 4.5 5.0 4.8 3.1 138 chr3L 18753527 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753665 intron ftz-f1 - chr3L_18_18750001 chr3L_18750001 RAL-377 2138 chr3L 18772389 18772434 chr3L 18781089 18781135 roo 19 8701 3.0 4.5 3.8 4.0 8746 chr3L 18772389 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781135 intron ftz-f1 - chr3L_19_18775001 chr3L_18775001 RAL-377 2139 chr3L 18784377 18784401 chr3L 18784486 18784510 9 109 5.5 8.0 6.8 1.2 133 chr3L 18784377 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784510 intron ftz-f1 - chr3L_9_18780001 chr3L_18780001 RAL-377 2140 chr3L 18797291 18797338 chr3L 18797395 18797442 10 104 1.0 2.0 1.5 4.0 151 chr3L 18797291 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797442 intron ftz-f1 - chr3L_10_18795001 chr3L_18795001 RAL-377 2141 chr3L 18810124 18810170 chr3L 18810221 18810272 11 100 3.0 1.5 2.2 3.4 148 chr3L 18810124 intron CG14073 - chr3L 18810198 intron CG14073 - chr3L 18810272 intron CG14073 - chr3L_11_18810001 chr3L_18810001 RAL-377 2142 chr3L 18832599 18832639 chr3L 18832697 18832726 11 95 3.5 3.0 3.2 2.6 127 chr3L 18832599 intron Indy - chr3L 18832662 intron Indy - chr3L 18832726 intron Indy - chr3L_11_18830001 chr3L_18830001 RAL-377 2143 chr3L 18833768 18833807 chr3L 18834952 18834991 1360 8 1180 9.0 8.5 8.8 0.8 1223 chr3L 18833768 intron Indy - chr3L 18834380 intron Indy - chr3L 18834991 intron Indy - chr3L_8_18830001 chr3L_18830001 RAL-377 2144 chr3L 18861743 18861797 chr3L 18861856 18861890 16 108 5.5 1.0 3.2 3.8 147 chr3L 18861743 intergenic not near genes chr3L 18861816 intergenic not near genes chr3L 18861890 intergenic not near genes chr3L_16_18860001 chr3L_18860001 RAL-377 2145 chr3L 18885968 18886013 chr3L 18886064 18886109 18 96 0.0 5.5 2.8 4.7 141 chr3L 18885968 intron CG3961 - chr3L 18886038 intron CG3961 - chr3L 18886109 intron CG3961 - chr3L_18_18885001 chr3L_18885001 RAL-377 2146 chr3L 18888424 18888465 chr3L 18888526 18888567 16 102 5.5 6.0 5.8 2.4 143 chr3L 18888424 intron CG3961 - chr3L 18888496 intron CG3961 - chr3L 18888567 intron CG3961 - chr3L_16_18885001 chr3L_18885001 RAL-377 2147 chr3L 18895684 18895703 chr3L 18895792 18895811 9 108 6.5 4.5 5.5 1.4 127 chr3L 18895684 intron CG3902 - chr3L 18895748 intron CG3902 - chr3L 18895811 intron CG3902 - chr3L_9_18895001 chr3L_18895001 RAL-377 2148 chr3L 18933608 18933659 chr3L 18933722 18933759 14 112 2.5 2.5 2.5 4.0 151 chr3L 18933608 intron CG32204 - chr3L 18933684 intron CG32204 - chr3L 18933759 intron CG32204 - chr3L_14_18930001 chr3L_18930001 RAL-377 2149 chr3L 18935814 18935863 chr3L 18935923 18935972 16 109 3.5 5.5 4.5 2.9 158 chr3L 18935814 intron CG32204 - chr3L 18935893 intron CG32204 - chr3L 18935972 intron CG32204 - chr3L_16_18935001 chr3L_18935001 RAL-377 2150 chr3L 18942843 18942875 chr3L 18942973 18943008 5 128 1.5 5.0 3.2 1.2 165 chr3L 18942843 intron CG32204 - chr3L 18942926 intron CG32204 - chr3L 18943008 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-377 2151 chr3L 18948861 18948902 chr3L 18949107 18949148 7 246 2.5 1.5 2.0 2.3 287 chr3L 18948861 intergenic not near genes chr3L 18949004 intergenic not near genes chr3L 18949148 intergenic not near genes chr3L_7_18945001 chr3L_18945001 RAL-377 2152 chr3L 18958580 18958622 chr3L 18958676 18958718 13 96 3.0 4.5 3.8 2.7 138 chr3L 18958580 intergenic not near genes chr3L 18958649 intergenic not near genes chr3L 18958718 intergenic not near genes chr3L_13_18955001 chr3L_18955001 RAL-377 2153 chr3L 19008835 19008866 chr3L 19009175 19009224 jockey 8 351 1.5 2.0 1.8 2.9 389 chr3L 19008835 intron nkd - chr3L 19009030 intron nkd - chr3L 19009224 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-377 2154 chr3L 19082020 19082061 chr3L 19082139 19082180 10 121 3.5 3.0 3.2 2.4 160 chr3L 19082020 intron Mkp3 - chr3L 19082100 intron Mkp3 - chr3L 19082180 intron Mkp3 - chr3L_10_19080001 chr3L_19080001 RAL-377 2155 chr3L 19101705 19101735 chr3L 19102096 19102127 9 392 0.0 7.5 3.8 1.9 422 chr3L 19101705 intergenic not near genes chr3L 19101916 intergenic not near genes chr3L 19102127 intergenic not near genes chr3L_9_19100001 chr3L_19100001 RAL-377 2156 chr3L 19115635 19115667 chr3L 19115821 19115855 BS 7 188 3.5 2.5 3.0 1.8 220 chr3L 19115635 intron CG14082 - chr3L 19115745 intron CG14082 - chr3L 19115855 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-377 2157 chr3L 19117027 19117042 chr3L 19124489 19124509 mdg1 5 7463 15.0 4.5 9.8 0.5 7482 chr3L 19117027 intron CG14082 - chr3L 19120768 intron CG14082 - chr3L 19124509 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-377 2158 chr3L 19117053 19117076 chr3L 19124487 19124543 mdg1 10 7458 6.5 4.5 5.5 1.5 7490 chr3L 19117053 intron CG14082 - chr3L 19120798 intron CG14082 - chr3L 19124543 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-377 2159 chr3L 19138540 19138552 chr3L 19138641 19138653 4 101 6.0 9.0 7.5 0.5 113 chr3L 19138540 intron CG14082 - chr3L 19138596 intron CG14082 - chr3L 19138653 intron CG14082 - chr3L_4_19135001 chr3L_19135001 RAL-377 2160 chr3L 19138553 19138587 chr3L 19138635 19138678 5 95 2.5 7.5 5.0 0.8 125 chr3L 19138553 intron CG14082 - chr3L 19138616 intron CG14082 - chr3L 19138678 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-377 2161 chr3L 19182366 19182418 chr3L 19182467 19182513 13 100 2.5 3.0 2.8 3.4 147 chr3L 19182366 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182513 intron fz2 - chr3L_13_19180001 chr3L_19180001 RAL-377 2162 chr3L 19186922 19186975 chr3L 19187038 19187091 23 115 6.5 1.5 4.0 4.6 169 chr3L 19186922 intron fz2 - chr3L 19187006 intron fz2 - chr3L 19187091 intron fz2 - chr3L_23_19185001 chr3L_19185001 RAL-377 2163 chr3L 19208042 19208086 chr3L 19209435 19209467 Doc 9 1388 5.5 2.0 3.8 1.9 1425 chr3L 19208042 intron fz2 - chr3L 19208754 intron fz2 - chr3L 19209467 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-377 2164 chr3L 19269796 19269846 chr3L 19270020 19270046 10 214 2.5 2.0 2.2 3.1 250 chr3L 19269796 intron,exon CG14085 +,CG14088 - chr3L 19269921 intron,exon CG14085 +,CG14088 - chr3L 19270046 intron,exon CG14085 +,CG14088 - chr3L_10_19265001 chr3L_19265001 RAL-377 2165 chr3L 19315236 19315279 chr3L 19315440 19315483 12 199 2.5 3.5 3.0 3.0 247 chr3L 19315236 intron pip - chr3L 19315360 intron pip - chr3L 19315483 intron pip - chr3L_12_19315001 chr3L_19315001 RAL-377 2166 chr3L 19335723 19335773 chr3L 19335830 19335875 7 106 3.0 3.5 3.2 1.7 152 chr3L 19335723 intron pip - chr3L 19335799 intron pip - chr3L 19335875 intron pip - chr3L_7_19335001 chr3L_19335001 RAL-377 2167 chr3L 19342741 19342777 chr3L 19342852 19342888 17 111 5.0 3.0 4.0 3.4 147 chr3L 19342741 3` UTR CG32206 - chr3L 19342814 3` UTR CG32206 - chr3L 19342888 3` UTR CG32206 - chr3L_17_19340001 chr3L_19340001 RAL-377 2168 chr3L 19353624 19353670 chr3L 19353726 19353766 16 101 2.0 3.0 2.5 4.6 142 chr3L 19353624 intron CG32206 - chr3L 19353695 intron CG32206 - chr3L 19353766 intron CG32206 - chr3L_16_19350001 chr3L_19350001 RAL-377 2169 chr3L 19417779 19417814 chr3L 19417878 19417908 4 98 5.5 3.5 4.5 0.7 129 chr3L 19417779 intergenic not near genes chr3L 19417844 intergenic not near genes chr3L 19417908 intergenic not near genes chr3L_4_19415001 chr3L_19415001 RAL-377 2170 chr3L 19439284 19439290 chr3L 19439383 19439395 4 104 2.0 13.5 7.8 0.5 111 chr3L 19439284 intergenic not near genes chr3L 19439340 intergenic not near genes chr3L 19439395 intergenic not near genes chr3L_4_19435001 chr3L_19435001 RAL-377 2171 chr3L 19488479 19488499 chr3L 19488581 19488601 9 101 10.0 9.5 9.8 0.8 122 chr3L 19488479 intergenic pncr009:3L -,CG32212 + chr3L 19488540 intergenic pncr009:3L -,CG32212 + chr3L 19488601 intergenic pncr009:3L -,CG32212 + chr3L_9_19485001 chr3L_19485001 RAL-377 2172 chr3L 19527910 19527956 chr3L 19528009 19528055 14 99 4.5 5.0 4.8 2.4 145 chr3L 19527910 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528055 intergenic not near genes chr3L_14_19525001 chr3L_19525001 RAL-377 2173 chr3L 19534058 19534072 chr3L 19534162 19534205 4 119 1.5 6.5 4.0 0.8 147 chr3L 19534058 exon Cpr76Bd + chr3L 19534132 exon Cpr76Bd + chr3L 19534205 exon Cpr76Bd + chr3L_4_19530001 chr3L_19530001 RAL-377 2174 chr3L 19544222 19544268 chr3L 19544318 19544364 17 96 8.5 7.0 7.8 1.9 142 chr3L 19544222 intergenic CG9279 -,l(3)76BDr - chr3L 19544293 intergenic l(3)76BDr -,CG9279 - chr3L 19544364 3` UTR l(3)76BDr - chr3L_17_19540001 chr3L_19540001 RAL-377 2175 chr3L 19792346 19792367 chr3L 19792460 19792482 10 115 13.5 11.0 12.2 0.8 136 chr3L 19792346 intron,intron CG42637 -,Gyc76C - chr3L 19792414 intron,intron CG42637 -,Gyc76C - chr3L 19792482 intron,intron CG42637 -,Gyc76C - chr3L_10_19790001 chr3L_19790001 RAL-377 2176 chr3L 19807479 19807527 chr3L 19807585 19807633 15 105 2.5 5.5 4.0 3.0 154 chr3L 19807479 intron Kap-alpha1 + chr3L 19807556 intron Kap-alpha1 + chr3L 19807633 intron Kap-alpha1 + chr3L_15_19805001 chr3L_19805001 RAL-377 2177 chr3L 19820282 19820319 chr3L 19827851 19827888 412 16 7569 3.5 5.5 4.5 2.9 7606 chr3L 19820282 intron Deaf1 + chr3L 19824085 intron Deaf1 + chr3L 19827888 intron Deaf1 + chr3L_16_19820001 chr3L_19820001 RAL-377 2178 chr3L 19848493 19848527 chr3L 19857698 19857737 roo 9 9205 7.5 7.5 7.5 1.1 9244 chr3L 19848493 intron Papss + chr3L 19853115 intron Papss + chr3L 19857737 intron Papss + chr3L_9_19850001 chr3L_19850001 RAL-377 2179 chr3L 19933521 19933551 chr3L 19934363 19934393 13 840 7.5 3.0 5.2 2.1 872 chr3L 19933521 intergenic CR45678 + chr3L 19933957 5` UTR CR45678 + chr3L 19934393 intergenic CR45678 + chr3L_13_19930001 chr3L_19930001 RAL-377 2180 chr3L 19981188 19981235 chr3L 19981288 19981335 22 100 2.0 5.5 3.8 4.6 147 chr3L 19981188 intergenic CG17732 + chr3L 19981262 intergenic CG17732 + chr3L 19981335 intergenic CG17732 + chr3L_22_19980001 chr3L_19980001 RAL-377 2181 chr3L 20038798 20038850 chr3L 20038995 20039047 13 198 2.5 4.0 3.2 3.1 249 chr3L 20038798 intergenic not near genes chr3L 20038922 intergenic not near genes chr3L 20039047 intergenic not near genes chr3L_13_20035001 chr3L_20035001 RAL-377 2182 chr3L 20057545 20057589 chr3L 20057678 20057722 12 132 2.5 3.5 3.0 3.0 177 chr3L 20057545 intergenic not near genes chr3L 20057634 intergenic not near genes chr3L 20057722 intergenic not near genes chr3L_12_20055001 chr3L_20055001 RAL-377 2183 chr3L 20081727 20081764 chr3L 20081830 20081867 16 103 6.0 3.5 4.8 2.8 140 chr3L 20081727 intron sNPF-R - chr3L 20081797 intron sNPF-R - chr3L 20081867 intron sNPF-R - chr3L_16_20080001 chr3L_20080001 RAL-377 2184 chr3L 20096244 20096282 chr3L 20096372 20096380 9 125 3.0 8.0 5.5 1.4 136 chr3L 20096244 intergenic not near genes chr3L 20096312 intergenic not near genes chr3L 20096380 intergenic not near genes chr3L_9_20095001 chr3L_20095001 RAL-377 2185 chr3L 20113462 20113502 chr3L 20113577 20113617 9 115 4.0 7.0 5.5 1.4 155 chr3L 20113462 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113617 intergenic not near genes chr3L_9_20110001 chr3L_20110001 RAL-377 2186 chr3L 20113641 20113688 chr3L 20122918 20122965 roo 11 9275 4.5 5.5 5.0 1.8 9324 chr3L 20113641 intergenic not near genes chr3L 20118303 intergenic not near genes chr3L 20122965 intergenic not near genes chr3L_11_20115001 chr3L_20115001 RAL-377 2187 chr3L 20143068 20143112 chr3L 20143168 20143211 16 100 5.0 3.0 4.0 3.2 143 chr3L 20143068 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143211 intergenic not near genes chr3L_16_20140001 chr3L_20140001 RAL-377 2188 chr3L 20150711 20150758 chr3L 20150862 20150909 32 150 4.5 6.0 5.2 5.2 198 chr3L 20150711 3` UTR CG42674 - chr3L 20150810 3` UTR CG42674 - chr3L 20150909 3` UTR CG42674 - chr3L_32_20150001 chr3L_20150001 RAL-377 2189 chr3L 20218212 20218228 chr3L 20218348 20218364 7 136 0.0 8.5 4.2 1.3 152 chr3L 20218212 intergenic CG6933 - chr3L 20218288 intergenic CG6933 - chr3L 20218364 intergenic CG6933 - chr3L_7_20215001 chr3L_20215001 RAL-377 2190 chr3L 20257316 20257360 chr3L 20258455 20258500 pogo 17 1139 3.0 2.0 2.5 4.9 1184 chr3L 20257316 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258500 intron rdgC + chr3L_17_20255001 chr3L_20255001 RAL-377 2191 chr3L 20283662 20283706 chr3L 20283766 20283810 17 103 2.5 6.0 4.2 3.3 148 chr3L 20283662 intron gogo - chr3L 20283736 intron gogo - chr3L 20283810 intron gogo - chr3L_17_20280001 chr3L_20280001 RAL-377 2192 chr3L 20345588 20345635 chr3L 20345689 20345731 11 97 5.0 3.5 4.2 2.1 143 chr3L 20345588 intergenic Rbbp5 - chr3L 20345660 intergenic Rbbp5 - chr3L 20345731 intergenic Rbbp5 - chr3L_11_20345001 chr3L_20345001 RAL-377 2193 chr3L 20386919 20386971 chr3L 20387041 20387093 16 122 4.0 4.0 4.0 3.2 174 chr3L 20386919 intron fbl + chr3L 20387006 intron fbl + chr3L 20387093 intron fbl + chr3L_16_20385001 chr3L_20385001 RAL-377 2194 chr3L 20451257 20451300 chr3L 20451518 20451561 12 261 2.5 6.0 4.2 2.3 304 chr3L 20451257 exon CG5199 - chr3L 20451409 intron CG5199 - chr3L 20451561 intron CG5199 - chr3L_12_20450001 chr3L_20450001 RAL-377 2195 chr3L 20462567 20462603 chr3L 20462668 20462699 16 100 6.0 0.0 3.0 4.0 132 chr3L 20462567 intron atk - chr3L 20462633 intron atk - chr3L 20462699 intron atk - chr3L_16_20460001 chr3L_20460001 RAL-377 2196 chr3L 20476735 20476786 chr3L 20484354 20484370 springer 24 7617 6.0 8.5 7.2 2.9 7635 chr3L 20476735 3` UTR isoQC + chr3L 20480552 intergenic not near genes chr3L 20484370 3` UTR ZnT77C - chr3L_24_20480001 chr3L_20480001 RAL-377 2197 chr3L 20487647 20487663 chr3L 20488118 20488134 INE-1 8 471 10.5 2.5 6.5 1.1 487 chr3L 20487647 intron ZnT77C - chr3L 20487890 intron ZnT77C - chr3L 20488134 exon ZnT77C - chr3L_8_20485001 chr3L_20485001 RAL-377 2198 chr3L 20525228 20525228 chr3L 22908066 22908066 5 2382838 13.0 29.0 21.0 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-377 2199 chr3L 20525229 20525229 chr3L 22908066 22908067 5 2382838 12.5 29.0 20.8 0.2 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-377 2200 chr3L 20710751 20710790 chr3L 20710848 20710887 13 96 3.5 4.5 4.0 2.6 136 chr3L 20710751 intergenic not near genes chr3L 20710819 intergenic not near genes chr3L 20710887 intergenic not near genes chr3L_13_20710001 chr3L_20710001 RAL-377 2201 chr3L 20741000 20741051 chr3L 20741108 20741159 15 107 4.5 6.0 5.2 2.4 159 chr3L 20741000 intron CG13252 + chr3L 20741080 intron CG13252 + chr3L 20741159 intron CG13252 + chr3L_15_20740001 chr3L_20740001 RAL-377 2202 chr3L 20752603 20752647 chr3L 20755535 20755574 9 2931 3.5 6.0 4.8 1.6 2971 chr3L 20752603 intergenic not near genes chr3L 20754088 intergenic not near genes chr3L 20755574 exon CG33912 - chr3L_9_20750001 chr3L_20750001 RAL-377 2203 chr3L 20821274 20821311 chr3L 20824763 20824800 NOF 8 3489 8.0 9.0 8.5 0.8 3526 chr3L 20821274 intron Pka-R1 + chr3L 20823037 intron Pka-R1 + chr3L 20824800 intron Pka-R1 + chr3L_8_20820001 chr3L_20820001 RAL-377 2204 chr3L 20849253 20849301 chr3L 20849352 20849400 20 99 4.5 2.0 3.2 4.8 147 chr3L 20849253 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849400 intron CG32432 - chr3L_20_20845001 chr3L_20845001 RAL-377 2205 chr3L 20858049 20858098 chr3L 20858168 20858217 15 119 9.0 3.5 6.2 2.1 168 chr3L 20858049 intron CG32432 - chr3L 20858133 intron CG32432 - chr3L 20858217 intron CG32432 - chr3L_15_20855001 chr3L_20855001 RAL-377 2206 chr3L 20896104 20896138 chr3L 20896719 20896745 6 613 4.0 3.5 3.8 1.2 641 chr3L 20896104 intergenic Sfp77F - chr3L 20896424 3` UTR Sfp77F - chr3L 20896745 3` UTR Sfp77F - chr3L_6_20895001 chr3L_20895001 RAL-377 2207 chr3L 21014906 21014947 chr3L 21023399 21023441 Tirant 15 8488 2.5 5.0 3.8 3.1 8535 chr3L 21014906 intron skd - chr3L 21019174 intron skd - chr3L 21023441 intron skd - chr3L_15_21015001 chr3L_21015001 RAL-377 2208 chr3L 21082195 21082238 chr3L 21082287 21082336 16 98 4.0 4.5 4.2 3.1 141 chr3L 21082195 intron ko - chr3L 21082266 intron ko - chr3L 21082336 intron ko - chr3L_16_21080001 chr3L_21080001 RAL-377 2209 chr3L 21102094 21102141 chr3L 21103383 21103427 12 1288 2.5 1.5 2.0 4.0 1333 chr3L 21102094 intron ko - chr3L 21102760 intron ko - chr3L 21103427 intron ko - chr3L_12_21100001 chr3L_21100001 RAL-377 2210 chr3L 21150913 21150963 chr3L 21151069 21151119 22 156 4.0 5.5 4.8 3.8 206 chr3L 21150913 intron Ac78C - chr3L 21151016 intron Ac78C - chr3L 21151119 intron Ac78C - chr3L_22_21150001 chr3L_21150001 RAL-377 2211 chr3L 21151850 21151896 chr3L 21156954 21157000 flea 14 5104 4.0 6.5 5.2 2.3 5150 chr3L 21151850 intron Ac78C - chr3L 21154425 intron Ac78C - chr3L 21157000 intron Ac78C - chr3L_14_21150001 chr3L_21150001 RAL-377 2212 chr3L 21160947 21160978 chr3L 21161063 21161077 11 111 4.0 4.0 4.0 2.2 130 chr3L 21160947 5` UTR Ac78C - chr3L 21161012 intron Ac78C - chr3L 21161077 intron Ac78C - chr3L_11_21160001 chr3L_21160001 RAL-377 2213 chr3L 21170050 21170079 chr3L 21170283 21170286 6 235 2.5 3.5 3.0 1.5 236 chr3L 21170050 intron Ac78C - chr3L 21170168 intron Ac78C - chr3L 21170286 intron Ac78C - chr3L_6_21170001 chr3L_21170001 RAL-377 2214 chr3L 21306125 21306178 chr3L 21315304 21315357 roo 22 9178 5.5 5.5 5.5 3.4 9232 chr3L 21306125 3` UTR CG7632 + chr3L 21310741 intron Pc - chr3L 21315357 3` UTR Pc - chr3L_22_21310001 chr3L_21310001 RAL-377 2215 chr3L 21319506 21319558 chr3L 21319616 21319668 13 108 6.5 5.0 5.8 1.9 162 chr3L 21319506 5` UTR Rab26 + chr3L 21319587 5` UTR Rab26 + chr3L 21319668 5` UTR Rab26 + chr3L_13_21315001 chr3L_21315001 RAL-377 2216 chr3L 21406982 21407026 chr3L 21407073 21407125 5 96 4.0 1.5 2.8 1.3 143 chr3L 21406982 intron rgn + chr3L 21407054 intron rgn + chr3L 21407125 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-377 2217 chr3L 4341330 4341333 chr3L 21448026 21448026 9 17106693 20.0 14.0 17.0 0.5 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_9_12890001 chr3L_12890001 RAL-377 2218 chr3L 7201270 7201270 chr3L 21448026 21448026 5 14246756 3.5 14.0 8.8 0.5 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_5_14320001 chr3L_14320001 RAL-377 2219 chr3L 16736388 16736393 chr3L 21448026 21448026 6 4711636 4.0 14.0 9.0 0.6 4711638 chr3L 16736388 intron CG9701 + chr3L 19092207 intergenic MESR6 + chr3L 21448026 3` UTR Syx7 + chr3L_6_19090001 chr3L_19090001 RAL-377 2220 chr3L 4341332 4341333 chr3L 21448027 21448027 13 17106694 20.0 14.0 17.0 0.7 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_13_12890001 chr3L_12890001 RAL-377 2221 chr3L 16736388 16736393 chr3L 21448027 21448027 4 4711635 4.0 14.0 9.0 0.4 4711639 chr3L 16736388 intron CG9701 + chr3L 19092208 intergenic MESR6 + chr3L 21448027 3` UTR Syx7 + chr3L_4_19090001 chr3L_19090001 RAL-377 2222 chr3L 21482438 21482480 chr3L 21482539 21482581 10 100 2.5 2.5 2.5 2.9 143 chr3L 21482438 intergenic not near genes chr3L 21482510 intergenic not near genes chr3L 21482581 intergenic not near genes chr3L_10_21480001 chr3L_21480001 RAL-377 2223 chr3L 21498826 21498840 chr3L 21500482 21500496 1360 4 1656 12.5 3.5 8.0 0.4 1670 chr3L 21498826 5` UTR,intron CR43933 +,Glg1 - chr3L 21499661 intron Glg1 - chr3L 21500496 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-377 2224 chr3L 21498841 21498869 chr3L 21500477 21500518 1360 8 1651 7.0 3.0 5.0 1.3 1677 chr3L 21498841 intron Glg1 - chr3L 21499680 intron Glg1 - chr3L 21500518 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-377 2225 chr3L 21501153 21501168 chr3L 21501267 21501281 1360 11 114 3.0 7.5 5.2 1.8 128 chr3L 21501153 intron Glg1 - chr3L 21501217 intron Glg1 - chr3L 21501281 intron Glg1 - chr3L_11_21500001 chr3L_21500001 RAL-377 2226 chr3L 21739325 21739373 chr3L 21739437 21739485 13 109 2.5 4.0 3.2 3.1 160 chr3L 21739325 intergenic CG14566 - chr3L 21739405 intergenic CG14566 - chr3L 21739485 3` UTR CG14566 - chr3L_13_21735001 chr3L_21735001 RAL-377 2227 chr3L 21749301 21749333 chr3L 21754481 21754513 Doc 8 5177 3.5 4.0 3.8 1.7 5212 chr3L 21749301 intron Syn1 - chr3L 21751907 intron Syn1 - chr3L 21754513 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-377 2228 chr3L 21767023 21767068 chr3L 21767124 21767169 21 100 5.0 8.0 6.5 2.8 146 chr3L 21767023 intron Syn1 - chr3L 21767096 intron Syn1 - chr3L 21767169 intron Syn1 - chr3L_21_21765001 chr3L_21765001 RAL-377 2229 chr3L 21770027 21770030 chr3L 21770134 21770134 4 106 8.5 4.5 6.5 0.5 107 chr3L 21770027 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770080 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770134 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_4_21770001 chr3L_21770001 RAL-377 2230 chr3L 21787599 21787637 chr3L 21787697 21787735 17 96 3.0 5.0 4.0 3.4 136 chr3L 21787599 intergenic not near genes chr3L 21787667 intergenic not near genes chr3L 21787735 intergenic not near genes chr3L_17_21785001 chr3L_21785001 RAL-377 2231 chr3L 21788587 21788629 chr3L 21788692 21788734 11 105 7.5 3.5 5.5 1.7 147 chr3L 21788587 intergenic not near genes chr3L 21788660 intergenic not near genes chr3L 21788734 intergenic not near genes chr3L_11_21785001 chr3L_21785001 RAL-377 2232 chr3L 21809957 21809970 chr3L 21810065 21810078 4 108 7.5 14.0 10.8 0.3 121 chr3L 21809957 intron eg + chr3L 21810018 intron eg + chr3L 21810078 intron eg + chr3L_4_21810001 chr3L_21810001 RAL-377 2233 chr3L 21852263 21852282 chr3L 21852351 21852395 5 106 3.0 3.5 3.2 1.2 132 chr3L 21852263 intron mub + chr3L 21852329 intron mub + chr3L 21852395 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-377 2234 chr3L 21872412 21872454 chr3L 21872511 21872553 12 98 2.5 5.5 4.0 2.4 141 chr3L 21872412 intron mub + chr3L 21872482 intron mub + chr3L 21872553 intron mub + chr3L_12_21870001 chr3L_21870001 RAL-377 2235 chr3L 21886371 21886418 chr3L 21886473 21886521 14 103 1.5 4.0 2.8 3.7 150 chr3L 21886371 intron,intron mub +,CR43878 - chr3L 21886446 intron,intron mub +,CR43878 - chr3L 21886521 intron,intron mub +,CR43878 - chr3L_14_21885001 chr3L_21885001 RAL-377 2236 chr3L 21905311 21905349 chr3L 21905410 21905447 6 96 4.0 3.5 3.8 1.2 136 chr3L 21905311 intron mub + chr3L 21905379 intron mub + chr3L 21905447 intron mub + chr3L_6_21905001 chr3L_21905001 RAL-377 2237 chr3L 21950321 21950356 chr3L 21950418 21950453 13 96 3.5 6.0 4.8 2.2 132 chr3L 21950321 exon CG7448 + chr3L 21950387 exon CG7448 + chr3L 21950453 intron CG7448 + chr3L_13_21950001 chr3L_21950001 RAL-377 2238 chr3L 21975659 21975710 chr3L 21975913 21975964 10 254 3.5 3.5 3.5 2.2 305 chr3L 21975659 intron CG7470 + chr3L 21975812 intron CG7470 + chr3L 21975964 intron CG7470 + chr3L_10_21975001 chr3L_21975001 RAL-377 2239 chr3L 21994420 21994469 chr3L 21994521 21994570 18 101 5.0 3.0 4.0 3.6 150 chr3L 21994420 intergenic not near genes chr3L 21994495 intergenic not near genes chr3L 21994570 intergenic not near genes chr3L_18_21990001 chr3L_21990001 RAL-377 2240 chr3L 22006810 22006860 chr3L 22006916 22006966 16 106 2.5 6.0 4.2 3.1 156 chr3L 22006810 intergenic not near genes chr3L 22006888 intergenic not near genes chr3L 22006966 intergenic not near genes chr3L_16_22005001 chr3L_22005001 RAL-377 2241 chr3L 22008829 22008875 chr3L 22008926 22008972 9 93 2.5 1.5 2.0 3.0 143 chr3L 22008829 intergenic not near genes chr3L 22008900 intergenic not near genes chr3L 22008972 intergenic not near genes chr3L_9_22005001 chr3L_22005001 RAL-377 2242 chr3L 22038657 22038697 chr3L 22039243 22039283 11 581 3.5 6.0 4.8 1.9 626 chr3L 22038657 intron Oct-TyrR + chr3L 22038970 intron Oct-TyrR + chr3L 22039283 intron Oct-TyrR + chr3L_11_22035001 chr3L_22035001 RAL-377 2243 chr3L 22099656 22099704 chr3L 22105862 22105910 3S18 18 6206 11.0 5.5 8.2 2.0 6254 chr3L 22099656 intergenic not near genes chr3L 22102783 intergenic not near genes chr3L 22105910 intergenic not near genes chr3L_18_22100001 chr3L_22100001 RAL-377 2244 chr3L 22130484 22130519 chr3L 22130650 22130685 12 166 4.0 4.0 4.0 2.4 201 chr3L 22130484 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130685 intergenic not near genes chr3L_12_22130001 chr3L_22130001 RAL-377 2245 chr3L 22169451 22169484 chr3L 22169561 22169597 13 113 2.5 7.0 4.8 2.2 146 chr3L 22169451 intron olf413 + chr3L 22169524 intron olf413 + chr3L 22169597 intron olf413 + chr3L_13_22165001 chr3L_22165001 RAL-377 2246 chr3L 22276525 22276567 chr3L 22276686 22276706 7 157 1.5 2.5 2.0 2.3 181 chr3L 22276525 intron srpk79D + chr3L 22276616 intron srpk79D + chr3L 22276706 intron srpk79D + chr3L_7_22275001 chr3L_22275001 RAL-377 2247 chr3L 22447182 22447225 chr3L 22447288 22447336 15 111 4.0 8.0 6.0 2.1 154 chr3L 22447182 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447336 intergenic not near genes chr3L_15_22445001 chr3L_22445001 RAL-377 2248 chr3L 22555751 22555800 chr3L 22563241 22563243 blood 13 7480 3.0 1.0 2.0 4.3 7492 chr3L 22555751 intergenic not near genes chr3L 22559497 intergenic not near genes chr3L 22563243 intergenic not near genes chr3L_13_22555001 chr3L_22555001 RAL-377 2249 chr3L 22570406 22570457 chr3L 22570570 22570605 16 161 3.0 3.5 3.2 3.8 199 chr3L 22570406 intergenic not near genes chr3L 22570506 intergenic not near genes chr3L 22570605 intergenic not near genes chr3L_16_22570001 chr3L_22570001 RAL-377 2250 chr3L 22577632 22577648 chr3L 22582440 22582456 Doc 6 4808 3.0 5.0 4.0 1.2 4824 chr3L 22577632 intergenic not near genes chr3L 22580044 intergenic not near genes chr3L 22582456 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-377 2251 chr3L 22617170 22617219 chr3L 22624642 22624681 blood 19 7471 4.5 4.5 4.5 3.5 7511 chr3L 22617170 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624681 intron CG14459 - chr3L_19_22620001 chr3L_22620001 RAL-377 2252 chr3L 22630723 22630771 chr3L 22630822 22630860 9 95 2.0 3.5 2.8 2.4 137 chr3L 22630723 intron CG14459 - chr3L 22630792 intron CG14459 - chr3L 22630860 intron CG14459 - chr3L_9_22630001 chr3L_22630001 RAL-377 2253 chr3L 22652304 22652352 chr3L 22652462 22652510 5 158 3.0 4.5 3.8 1.0 206 chr3L 22652304 exon CG33772 - chr3L 22652407 intron CG33772 - chr3L 22652510 exon CG33772 - chr3L_5_22650001 chr3L_22650001 RAL-377 2254 chr3L 22761368 22761409 chr3L 22766822 22766863 Ivk 17 5454 8.5 6.5 7.5 2.0 5495 chr3L 22761368 intron SPoCk + chr3L 22764116 intron SPoCk + chr3L 22766863 intron SPoCk + chr3L_17_22760001 chr3L_22760001 RAL-377 2255 chr3L 22786063 22786117 chr3L 22788480 22788534 65 2419 75.0 88.0 81.5 0.8 2471 chr3L 22786063 3` UTR SPoCk + chr3L 22787298 3` UTR SPoCk + chr3L 22788534 exon CG14448 + chr3L_65_22785001 chr3L_22785001 RAL-377 2256 chr3L 22853446 22853720 chr3L 22853553 22853816 33 104 2.0 8.0 5.0 5.5 370 chr3L 22853446 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853631 5` UTR CR43426 + chr3L 22853816 5` UTR CR43426 + chr3L_33_22850001 chr3L_22850001 RAL-377 2257 chr3L 22865969 22866011 chr3L 22867122 22867143 Doc 16 1152 7.0 8.0 7.5 1.9 1174 chr3L 22865969 intron CG33170 + chr3L 22866556 intron CG33170 + chr3L 22867143 intron CG33170 + chr3L_16_22865001 chr3L_22865001 RAL-377 2258 chr3L 20525228 20525230 chr3L 22908066 22908066 10 2382837 12.0 29.0 20.5 0.5 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-377 2259 chr3L 20525230 20525230 chr3L 22908067 22908067 11 2382837 12.0 29.0 20.5 0.5 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_11_21715001 chr3L_21715001 RAL-377 2260 chr3L 22974340 22974395 chr3L 22974439 22974489 9 94 4.0 3.5 3.8 1.9 149 chr3L 22974340 intergenic not near genes chr3L 22974414 intergenic not near genes chr3L 22974489 intergenic not near genes chr3L_9_22970001 chr3L_22970001 RAL-377 2261 chr3L 22975243 22975264 chr3L 22975352 22975375 10 110 3.5 6.5 5.0 1.7 132 chr3L 22975243 intergenic not near genes chr3L 22975309 intergenic not near genes chr3L 22975375 intergenic not near genes chr3L_10_22975001 chr3L_22975001 RAL-377 2262 chr3L 22989842 22989894 chr3L 22996834 22996888 297 18 6990 2.5 7.5 5.0 3.0 7046 chr3L 22989842 intergenic not near genes chr3L 22993365 intergenic not near genes chr3L 22996888 intergenic not near genes chr3L_18_22990001 chr3L_22990001 RAL-377 2263 chr3L 23004895 23004934 chr3L 23005231 23005277 8 342 0.5 0.5 0.5 5.3 382 chr3L 23004895 intron nrm + chr3L 23005086 intron nrm + chr3L 23005277 intron nrm + chr3L_8_23005001 chr3L_23005001 RAL-377 2264 chr3L 23096053 23096087 chr3L 23096156 23096189 12 103 4.0 5.0 4.5 2.2 136 chr3L 23096053 intergenic not near genes chr3L 23096121 intergenic not near genes chr3L 23096189 intergenic not near genes chr3L_12_23095001 chr3L_23095001 RAL-377 2265 chr3L 23251919 23251970 chr3L 23252056 23252107 12 137 3.5 2.5 3.0 3.0 188 chr3L 23251919 intron nAChRalpha4 + chr3L 23252013 intron nAChRalpha4 + chr3L 23252107 intron nAChRalpha4 + chr3L_12_23250001 chr3L_23250001 RAL-377 2266 chr3L 23253319 23253360 chr3L 23253424 23253460 14 104 6.5 8.0 7.2 1.7 141 chr3L 23253319 intron nAChRalpha4 + chr3L 23253390 intron nAChRalpha4 + chr3L 23253460 intron nAChRalpha4 + chr3L_14_23250001 chr3L_23250001 RAL-377 2267 chr3L 23428221 23428268 chr3L 23428321 23428368 13 98 4.5 1.0 2.8 3.4 147 chr3L 23428221 intergenic not near genes chr3L 23428294 intergenic not near genes chr3L 23428368 intergenic not near genes chr3L_13_23425001 chr3L_23425001 RAL-377 2268 chr3L 23468009 23468048 chr3L 23468115 23468154 8 105 25.5 26.5 26.0 0.3 145 chr3L 23468009 intergenic not near genes chr3L 23468082 intergenic not near genes chr3L 23468154 intergenic not near genes chr3L_8_23465001 chr3L_23465001 RAL-377 2269 chr3L 23485839 23485890 chr3L 23485937 23485988 12 97 1.0 3.5 2.2 3.8 149 chr3L 23485839 intergenic not near genes chr3L 23485914 intergenic not near genes chr3L 23485988 intergenic not near genes chr3L_12_23485001 chr3L_23485001 RAL-377 2270 chr3L 23665514 23665528 chr3L 23665624 23665636 gypsy8 9 109 20.0 17.5 18.8 0.5 122 chr3L 23665514 intron AGO3 + chr3L 23665575 intron AGO3 + chr3L 23665636 intron AGO3 + chr3L_9_23665001 chr3L_23665001 RAL-377 2271 chr3L 23824006 23824036 chr3L 23824439 23824469 10 432 5.0 6.0 5.5 1.5 463 chr3L 23824006 intergenic not near genes chr3L 23824238 intergenic not near genes chr3L 23824469 intergenic not near genes chr3L_10_23820001 chr3L_23820001 RAL-377 2272 chr3L 23848824 23848837 chr3L 23849666 23849681 R1A1-element 4 843 6.5 4.5 5.5 0.6 857 chr3L 23848824 intron CG40470 - chr3L 23849252 intron CG40470 - chr3L 23849681 intron CG40470 - chr3L_4_23845001 chr3L_23845001 RAL-377 2273 chr3L 23868800 23868818 chr3L 23869137 23869149 5 332 33.5 30.5 32.0 0.2 349 chr3L 23868800 intron CG40470 - chr3L 23868974 intron CG40470 - chr3L 23869149 intron CG40470 - chr3L_5_23865001 chr3L_23865001 RAL-377 2274 chr3L 23913419 23913471 chr3L 23913530 23913582 16 109 3.0 3.0 3.0 4.0 163 chr3L 23913419 intron CG40470 - chr3L 23913500 intron CG40470 - chr3L 23913582 intron CG40470 - chr3L_16_23910001 chr3L_23910001 RAL-377 2275 chr3L 24009646 24009681 chr3L 24009848 24009883 7 201 6.5 5.5 6.0 1.0 237 chr3L 24009646 intergenic CR40053 - chr3L 24009764 intergenic CR40053 - chr3L 24009883 intergenic CR40053 - chr3L_7_24005001 chr3L_24005001 RAL-377 2276 chr3L 24012395 24012421 chr3L 24020751 24020782 roo 9 8359 8.5 7.0 7.8 1.0 8387 chr3L 24012395 intergenic not near genes chr3L 24016588 intergenic not near genes chr3L 24020782 intergenic not near genes chr3L_9_24015001 chr3L_24015001 RAL-377 2277 chr3L 24021261 24021311 chr3L 24022435 24022487 1360 16 1173 8.0 3.5 5.8 2.4 1226 chr3L 24021261 intergenic not near genes chr3L 24021874 intergenic not near genes chr3L 24022487 intergenic not near genes chr3L_16_24020001 chr3L_24020001 RAL-377 2278 chr3L 24791876 24791915 chr3L 24796675 24796714 Doc 9 4799 6.0 3.5 4.8 1.6 4838 chr3L 24791876 intergenic not near genes chr3L 24794295 intergenic not near genes chr3L 24796714 intergenic not near genes chr3L_9_24790001 chr3L_24790001 RAL-377 2279 chr3L 20525229 20525229 chr3L 24821492 24821492 4 4296263 12.5 5.0 8.8 0.4 4296263 chr3L 20525229 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-377 2280 chr3L 25464012 25464034 chr3L 25464111 25464141 8 105 2.0 3.0 2.5 2.3 129 chr3L 25464012 intergenic not near genes chr3L 25464076 intergenic not near genes chr3L 25464141 intergenic not near genes chr3L_8_25460001 chr3L_25460001 RAL-377 2281 chr3L 25512795 25512806 chr3L 25512886 25512899 5 95 2.5 9.0 5.8 0.7 104 chr3L 25512795 intron CG41343 - chr3L 25512847 intron CG41343 - chr3L 25512899 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-377 2282 chr3L 25513559 25513598 chr3L 25513658 25513696 6 99 2.0 1.5 1.8 2.1 137 chr3L 25513559 intron CG41343 - chr3L 25513628 intron CG41343 - chr3L 25513696 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-377 2283 chr3L 25514880 25514901 chr3L 25514973 25515001 5 98 0.5 4.0 2.2 1.6 121 chr3L 25514880 intron CG41343 - chr3L 25514940 intron CG41343 - chr3L 25515001 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-377 2284 chr3L 25628499 25628517 chr3L 25633270 25633308 F-element 4 4786 5.0 3.0 4.0 0.8 4809 chr3L 25628499 intron CG41343 - chr3L 25630904 intron CG41343 - chr3L 25633308 intron CG41343 - chr3L_4_25630001 chr3L_25630001 RAL-377 2285 chr3L 26009406 26009453 chr3L 26009517 26009555 9 108 4.0 4.0 4.0 1.8 149 chr3L 26009406 intron CG40178 - chr3L 26009480 intron CG40178 - chr3L 26009555 intron CG40178 - chr3L_9_26005001 chr3L_26005001 RAL-377 2286 chr3L 26694910 26694920 chr3L 26695010 26695010 4 98 10.0 0.5 5.2 0.6 100 chr3L 26694910 intergenic not near genes chr3L 26694960 intergenic not near genes chr3L 26695010 intergenic not near genes chr3L_4_26690001 chr3L_26690001 RAL-377 2287 chr3L 26694933 26694959 chr3L 26695007 26695059 13 93 4.5 1.0 2.8 3.4 126 chr3L 26694933 intergenic not near genes chr3L 26694996 intergenic not near genes chr3L 26695059 intergenic not near genes chr3L_13_26690001 chr3L_26690001 RAL-377 2288 chr3L 26704510 26704526 chr3L 26709835 26709851 Transpac 4 5325 5.0 1.5 3.2 1.0 5341 chr3L 26704510 intergenic not near genes chr3L 26707180 intergenic not near genes chr3L 26709851 intergenic not near genes chr3L_4_26705001 chr3L_26705001 RAL-377 2289 chr3L 27167966 27167978 chr3L 27168076 27168116 6 121 4.0 3.0 3.5 1.3 150 chr3L 27167966 intergenic not near genes chr3L 27168041 intergenic not near genes chr3L 27168116 intergenic not near genes chr3L_6_27165001 chr3L_27165001 RAL-377 2290 chr3L 27368858 27368902 chr3L 27369423 27369467 12 565 6.5 2.5 4.5 2.2 609 chr3L 27368858 intron Dbp80 + chr3L 27369162 intron Dbp80 + chr3L 27369467 intron Dbp80 + chr3L_12_27365001 chr3L_27365001 RAL-377 2291 chr3L 27980680 27980730 chr3L 27985495 27985548 Doc 13 4817 4.0 4.5 4.2 2.5 4868 chr3L 27980680 intron CG17514 - chr3L 27983114 intron CG17514 - chr3L 27985548 intron CG17514 - chr3L_13_27980001 chr3L_27980001 RAL-377 2292 chr3R 97111 97112 chr3R 99847 99849 4 2736 15.5 13.0 14.2 0.3 2738 chr3R 97111 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_4_95001 chr3R_95001 RAL-377 2293 chr3R 556367 556387 chr3R 556463 556483 4 96 2.5 1.0 1.8 1.4 116 chr3R 556367 intergenic not near genes chr3R 556425 intergenic not near genes chr3R 556483 intergenic not near genes chr3R_4_555001 chr3R_555001 RAL-377 2294 chr3R 1021762 1021809 chr3R 1022002 1022048 9 235 33.5 22.5 28.0 0.3 286 chr3R 1021762 intergenic not near genes chr3R 1021905 intergenic not near genes chr3R 1022048 intergenic not near genes chr3R_9_1020001 chr3R_1020001 RAL-377 2295 chr3R 1062371 1062413 chr3R 1062549 1062590 11 178 3.0 2.0 2.5 3.1 219 chr3R 1062371 intron CG15831 + chr3R 1062480 intron CG15831 + chr3R 1062590 intron CG15831 + chr3R_11_1060001 chr3R_1060001 RAL-377 2296 chr3R 1443419 1443461 chr3R 1443515 1443561 7 96 0.5 2.5 1.5 2.8 142 chr3R 1443419 intron CG40155 + chr3R 1443490 intron CG40155 + chr3R 1443561 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-377 2297 chr3R 1613955 1613973 chr3R 1615074 1615092 6 1119 5.0 5.5 5.2 1.0 1137 chr3R 1613955 intergenic not near genes chr3R 1614524 intergenic not near genes chr3R 1615092 intergenic not near genes chr3R_6_1610001 chr3R_1610001 RAL-377 2298 chr3R 1939042 1939079 chr3R 1939156 1939193 15 113 3.5 5.0 4.2 2.9 151 chr3R 1939042 intergenic not near genes chr3R 1939118 intergenic not near genes chr3R 1939193 intergenic not near genes chr3R_15_1935001 chr3R_1935001 RAL-377 2299 chr3R 1953173 1953183 chr3R 1958538 1958548 Cr1a 5 5365 19.5 25.5 22.5 0.2 5375 chr3R 1953173 intergenic not near genes chr3R 1955860 intergenic not near genes chr3R 1958548 intergenic not near genes chr3R_5_1955001 chr3R_1955001 RAL-377 2300 chr3R 2447008 2447033 chr3R 2449572 2449596 Burdock 4 2560 28.5 10.0 19.2 0.2 2588 chr3R 2447008 intergenic not near genes chr3R 2448302 intergenic not near genes chr3R 2449596 intergenic not near genes chr3R_4_2445001 chr3R_2445001 RAL-377 2301 chr3R 3178707 3178713 chr3R 3595211 3595217 4 416504 9.5 19.5 14.5 0.3 416510 chr3R 3178707 intron CG42617 - chr3R 3386962 intergenic not near genes chr3R 3595217 intergenic not near genes chr3R_4_3385001 chr3R_3385001 RAL-377 2302 chr3R 3267248 3267282 chr3R 3267413 3267443 10 164 32.0 20.5 26.2 0.4 195 chr3R 3267248 intergenic not near genes chr3R 3267346 intergenic not near genes chr3R 3267443 intergenic not near genes chr3R_10_3265001 chr3R_3265001 RAL-377 2303 chr3R 3752719 3752761 chr3R 3752822 3752864 8 102 3.5 5.0 4.2 1.5 145 chr3R 3752719 intergenic CG41128 + chr3R 3752792 intergenic CG41128 + chr3R 3752864 intergenic not near genes chr3R_8_3750001 chr3R_3750001 RAL-377 2304 chr3R 3848043 3848047 chr3R 3848162 3848167 4 120 10.5 4.0 7.2 0.5 124 chr3R 3848043 intron CG41099 + chr3R 3848105 intron CG41099 + chr3R 3848167 intron CG41099 + chr3R_4_3845001 chr3R_3845001 RAL-377 2305 chr3R 3989294 3989302 chr3R 4068944 4068951 mdg1 4 79649 9.0 19.5 14.2 0.3 79657 chr3R 3989294 intergenic not near genes chr3R 4029122 intergenic not near genes chr3R 4068951 intergenic not near genes chr3R_4_4025001 chr3R_4025001 RAL-377 2306 chr3R 4105023 4105059 chr3R 4110247 4110283 copia 9 5223 4.0 2.5 3.2 2.1 5260 chr3R 4105023 intergenic not near genes chr3R 4107653 intergenic not near genes chr3R 4110283 intergenic not near genes chr3R_9_4105001 chr3R_4105001 RAL-377 2307 chr3R 4132882 4132928 chr3R 4133056 4133102 16 173 2.0 5.5 3.8 3.3 220 chr3R 4132882 5` UTR Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133102 intron Gfat1 + chr3R_16_4130001 chr3R_4130001 RAL-377 2308 chr3R 4206050 4206103 chr3R 4211645 4211698 mdg3 18 5594 5.0 4.5 4.8 3.1 5648 chr3R 4206050 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211698 intron CG14636 - chr3R_18_4205001 chr3R_4205001 RAL-377 2309 chr3R 4217134 4217163 chr3R 4217415 4217446 12 281 38.0 39.5 38.8 0.3 312 chr3R 4217134 intron aux + chr3R 4217290 intron aux + chr3R 4217446 5` UTR aux + chr3R_12_4215001 chr3R_4215001 RAL-377 2310 chr3R 4366739 4366789 chr3R 4375142 4375192 roo 15 8401 7.5 7.0 7.2 1.8 8453 chr3R 4366739 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375192 5` UTR CR44922 + chr3R_15_4370001 chr3R_4370001 RAL-377 2311 chr3R 4408393 4408406 chr3R 4412717 4412730 Juan 6 4324 14.0 9.0 11.5 0.5 4337 chr3R 4408393 intron CG32944 - chr3R 4410562 intron CG32944 - chr3R 4412730 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-377 2312 chr3R 4408410 4408441 chr3R 4412713 4412755 Juan 17 4322 5.0 7.0 6.0 2.4 4345 chr3R 4408410 intron CG32944 - chr3R 4410582 intron CG32944 - chr3R 4412755 intron CG32944 - chr3R_17_4410001 chr3R_4410001 RAL-377 2313 chr3R 4474669 4474720 chr3R 4474769 4474808 18 98 5.0 6.0 5.5 2.8 139 chr3R 4474669 intron CG31523 - chr3R 4474738 intron CG31523 - chr3R 4474808 intron CG31523 - chr3R_18_4470001 chr3R_4470001 RAL-377 2314 chr3R 4609528 4609572 chr3R 4610712 4610756 1360 15 1183 9.0 8.5 8.8 1.5 1228 chr3R 4609528 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610756 intergenic not near genes chr3R_15_4610001 chr3R_4610001 RAL-377 2315 chr3R 4625295 4625348 chr3R 4625700 4625751 18 402 2.0 3.5 2.8 4.7 456 chr3R 4625295 intron 5-HT2A + chr3R 4625523 intron 5-HT2A + chr3R 4625751 intron 5-HT2A + chr3R_18_4625001 chr3R_4625001 RAL-377 2316 chr3R 4680689 4680740 chr3R 4680788 4680839 24 98 7.0 2.5 4.8 4.1 150 chr3R 4680689 intron CG43427 + chr3R 4680764 intron CG43427 + chr3R 4680839 intron CG43427 + chr3R_24_4680001 chr3R_4680001 RAL-377 2317 chr3R 4733652 4733705 chr3R 4733796 4733849 18 144 4.0 6.5 5.2 2.9 197 chr3R 4733652 intergenic not near genes chr3R 4733750 intergenic not near genes chr3R 4733849 intergenic not near genes chr3R_18_4730001 chr3R_4730001 RAL-377 2318 chr3R 4753220 4753265 chr3R 4757543 4757583 F-element 9 4322 9.0 4.5 6.8 1.2 4363 chr3R 4753220 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757583 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-377 2319 chr3R 4861558 4861563 chr3R 4861659 4861664 4 101 7.0 3.5 5.2 0.6 106 chr3R 4861558 intron opa + chr3R 4861611 intron opa + chr3R 4861664 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-377 2320 chr3R 4896277 4896323 chr3R 4896390 4896436 15 113 3.0 2.5 2.8 3.9 159 chr3R 4896277 intergenic CR45580 + chr3R 4896356 intergenic CR45580 + chr3R 4896436 5` UTR CR45580 + chr3R_15_4895001 chr3R_4895001 RAL-377 2321 chr3R 4905000 4905044 chr3R 4905155 4905199 8 152 4.5 5.5 5.0 1.3 199 chr3R 4905000 intergenic not near genes chr3R 4905100 intergenic not near genes chr3R 4905199 intergenic not near genes chr3R_8_4905001 chr3R_4905001 RAL-377 2322 chr3R 4922327 4922361 chr3R 4922426 4922460 10 99 3.5 3.5 3.5 2.2 133 chr3R 4922327 intron Cdep + chr3R 4922394 intron Cdep + chr3R 4922460 intron Cdep + chr3R_10_4920001 chr3R_4920001 RAL-377 2323 chr3R 4943600 4943616 chr3R 4943725 4943741 5 125 9.0 4.5 6.8 0.6 141 chr3R 4943600 intron Cdep + chr3R 4943670 intron Cdep + chr3R 4943741 intron Cdep + chr3R_5_4940001 chr3R_4940001 RAL-377 2324 chr3R 4965986 4966035 chr3R 4966098 4966147 17 112 6.5 1.5 4.0 3.4 161 chr3R 4965986 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966147 intron CG1124 + chr3R_17_4965001 chr3R_4965001 RAL-377 2325 chr3R 4975912 4975966 chr3R 4976033 4976082 17 121 4.5 2.5 3.5 3.8 170 chr3R 4975912 intergenic not near genes chr3R 4975997 intergenic not near genes chr3R 4976082 intergenic not near genes chr3R_17_4975001 chr3R_4975001 RAL-377 2326 chr3R 4991484 4991520 chr3R 4992048 4992088 11 568 5.0 7.0 6.0 1.6 604 chr3R 4991484 intron CG2022 - chr3R 4991786 intron CG2022 - chr3R 4992088 intron CG2022 - chr3R_11_4990001 chr3R_4990001 RAL-377 2327 chr3R 5045825 5045864 chr3R 5052947 5052986 HMS-Beagle 9 7122 7.0 3.5 5.2 1.5 7161 chr3R 5045825 3` UTR CR43635 - chr3R 5049406 intergenic not near genes chr3R 5052986 intergenic CR45588 - chr3R_9_5045001 chr3R_5045001 RAL-377 2328 chr3R 5067960 5068012 chr3R 5073497 5073549 mdg3 16 5536 2.5 7.5 5.0 2.7 5589 chr3R 5067960 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073549 intergenic not near genes chr3R_16_5070001 chr3R_5070001 RAL-377 2329 chr3R 5112672 5112710 chr3R 5112766 5112808 8 86 2.5 3.5 3.0 2.0 136 chr3R 5112672 intergenic not near genes chr3R 5112740 intergenic not near genes chr3R 5112808 intergenic not near genes chr3R_8_5110001 chr3R_5110001 RAL-377 2330 chr3R 5131323 5131361 chr3R 5131422 5131460 6 98 4.0 7.5 5.8 0.9 137 chr3R 5131323 intergenic not near genes chr3R 5131392 intergenic not near genes chr3R 5131460 intergenic not near genes chr3R_6_5130001 chr3R_5130001 RAL-377 2331 chr3R 5143212 5143220 chr3R 5143345 5143392 4 162 3.0 4.0 3.5 0.9 180 chr3R 5143212 intergenic not near genes chr3R 5143302 intergenic not near genes chr3R 5143392 intergenic not near genes chr3R_4_5140001 chr3R_5140001 RAL-377 2332 chr3R 5278078 5278118 chr3R 5278173 5278219 19 99 5.0 6.5 5.8 2.8 141 chr3R 5278078 intron mtd - chr3R 5278148 intron mtd - chr3R 5278219 intron mtd - chr3R_19_5275001 chr3R_5275001 RAL-377 2333 chr3R 5282971 5282984 chr3R 5283068 5283072 4 95 6.5 8.0 7.2 0.5 101 chr3R 5282971 intron mtd - chr3R 5283022 intron mtd - chr3R 5283072 intron mtd - chr3R_4_5280001 chr3R_5280001 RAL-377 2334 chr3R 5289252 5289276 chr3R 5289343 5289370 6 99 3.0 2.5 2.8 1.6 118 chr3R 5289252 intron mtd - chr3R 5289311 intron mtd - chr3R 5289370 intron mtd - chr3R_6_5285001 chr3R_5285001 RAL-377 2335 chr3R 5338382 5338412 chr3R 5343579 5343608 Rt1c 17 5196 11.5 5.5 8.5 1.8 5226 chr3R 5338382 intron mtd - chr3R 5340995 intron mtd - chr3R 5343608 intron mtd - chr3R_17_5340001 chr3R_5340001 RAL-377 2336 chr3R 5385960 5386007 chr3R 5386151 5386198 11 189 1.5 4.5 3.0 2.8 238 chr3R 5385960 intron kkv - chr3R 5386079 intron kkv - chr3R 5386198 intron kkv - chr3R_11_5385001 chr3R_5385001 RAL-377 2337 chr3R 5445948 5445988 chr3R 5452428 5452463 Burdock 17 6478 5.0 4.0 4.5 3.1 6515 chr3R 5445948 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452463 intron CG14669 + chr3R_17_5445001 chr3R_5445001 RAL-377 2338 chr3R 5712065 5712114 chr3R 5712173 5712222 14 107 5.0 8.5 6.8 1.8 157 chr3R 5712065 3` UTR plx + chr3R 5712144 3` UTR plx + chr3R 5712222 3` UTR plx + chr3R_14_5710001 chr3R_5710001 RAL-377 2339 chr3R 5745993 5746041 chr3R 5746254 5746302 pogo 18 259 4.0 5.0 4.5 3.3 309 chr3R 5745993 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746302 3` UTR Madm + chr3R_18_5745001 chr3R_5745001 RAL-377 2340 chr3R 5746999 5747042 chr3R 5753210 5753253 diver 10 6210 5.0 8.0 6.5 1.3 6254 chr3R 5746999 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753253 intergenic CG2091 - chr3R_10_5750001 chr3R_5750001 RAL-377 2341 chr3R 5772355 5772406 chr3R 5772533 5772584 20 178 3.0 2.5 2.8 5.3 229 chr3R 5772355 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772584 intron CG2082 - chr3R_20_5770001 chr3R_5770001 RAL-377 2342 chr3R 5809107 5809138 chr3R 5809368 5809399 pogo 11 258 2.5 5.5 4.0 2.2 292 chr3R 5809107 3` UTR CG11000 + chr3R 5809253 3` UTR CG11000 + chr3R 5809399 3` UTR CG11000 + chr3R_11_5805001 chr3R_5805001 RAL-377 2343 chr3R 5822365 5822405 chr3R 5823551 5823592 1360 13 1187 4.0 6.0 5.0 2.2 1227 chr3R 5822365 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823592 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-377 2344 chr3R 5846858 5846895 chr3R 5846954 5846991 13 95 9.0 7.0 8.0 1.4 133 chr3R 5846858 intergenic CG1213 +,CG14676 + chr3R 5846924 intergenic CG14676 +,CG1213 + chr3R 5846991 intergenic CG14676 +,CG1213 + chr3R_13_5845001 chr3R_5845001 RAL-377 2345 chr3R 5895949 5895965 chr3R 5896174 5896178 4 226 0.5 4.5 2.5 1.1 229 chr3R 5895949 intron CG34113 - chr3R 5896064 intron CG34113 - chr3R 5896178 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-377 2346 chr3R 5895966 5895989 chr3R 5896169 5896223 5 228 0.5 3.5 2.0 1.7 257 chr3R 5895966 intron CG34113 - chr3R 5896094 intron CG34113 - chr3R 5896223 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-377 2347 chr3R 5927546 5927584 chr3R 5927806 5927844 pogo 10 258 4.0 6.0 5.0 1.7 298 chr3R 5927546 intron CG34113 - chr3R 5927695 intron CG34113 - chr3R 5927844 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-377 2348 chr3R 5935343 5935394 chr3R 5935439 5935490 16 96 6.5 1.0 3.8 3.3 147 chr3R 5935343 intron CG34113 - chr3R 5935416 intron CG34113 - chr3R 5935490 intron CG34113 - chr3R_16_5935001 chr3R_5935001 RAL-377 2349 chr3R 5943385 5943416 chr3R 5943484 5943515 5 99 0.5 4.5 2.5 1.4 130 chr3R 5943385 intron CG34113 - chr3R 5943450 intron CG34113 - chr3R 5943515 intron CG34113 - chr3R_5_5940001 chr3R_5940001 RAL-377 2350 chr3R 6006318 6006358 chr3R 6006423 6006463 14 101 3.5 7.0 5.2 2.3 145 chr3R 6006318 intron Rm62 - chr3R 6006390 intron Rm62 - chr3R 6006463 intron Rm62 - chr3R_14_6005001 chr3R_6005001 RAL-377 2351 chr3R 6015947 6015982 chr3R 6024445 6024483 Tirant 6 8497 2.0 2.0 2.0 2.0 8536 chr3R 6015947 intergenic not near genes chr3R 6020215 intergenic not near genes chr3R 6024483 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-377 2352 chr3R 6048426 6048466 chr3R 6048529 6048569 11 99 5.0 1.0 3.0 2.8 143 chr3R 6048426 intergenic not near genes chr3R 6048498 intergenic not near genes chr3R 6048569 intergenic not near genes chr3R_11_6045001 chr3R_6045001 RAL-377 2353 chr3R 6121164 6121183 chr3R 6121402 6121421 BS 6 238 0.0 7.0 3.5 1.3 257 chr3R 6121164 intergenic not near genes chr3R 6121292 intergenic not near genes chr3R 6121421 intergenic not near genes chr3R_6_6120001 chr3R_6120001 RAL-377 2354 chr3R 6141904 6141929 chr3R 6142000 6142015 5 94 6.0 4.0 5.0 0.8 111 chr3R 6141904 intergenic not near genes chr3R 6141960 intergenic not near genes chr3R 6142015 intergenic not near genes chr3R_5_6140001 chr3R_6140001 RAL-377 2355 chr3R 6158490 6158536 chr3R 6167093 6167132 Tirant 8 8600 8.0 4.0 6.0 1.1 8642 chr3R 6158490 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167132 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-377 2356 chr3R 6175151 6175202 chr3R 6182443 6182494 HMS-Beagle2 17 7290 2.5 3.0 2.8 4.5 7343 chr3R 6175151 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182494 intergenic CR45194 + chr3R_17_6175001 chr3R_6175001 RAL-377 2357 chr3R 6191155 6191199 chr3R 6191248 6191299 10 99 2.0 5.5 3.8 2.1 144 chr3R 6191155 intron NPFR + chr3R 6191227 intron NPFR + chr3R 6191299 intron NPFR + chr3R_10_6190001 chr3R_6190001 RAL-377 2358 chr3R 6192612 6192660 chr3R 6192717 6192765 15 98 2.5 5.5 4.0 3.0 153 chr3R 6192612 exon NPFR + chr3R 6192688 intron NPFR + chr3R 6192765 intron NPFR + chr3R_15_6190001 chr3R_6190001 RAL-377 2359 chr3R 6203951 6203989 chr3R 6204103 6204141 13 152 8.0 6.0 7.0 1.6 190 chr3R 6203951 intron Osi24 + chr3R 6204046 intron Osi24 + chr3R 6204141 intron Osi24 + chr3R_13_6200001 chr3R_6200001 RAL-377 2360 chr3R 6206269 6206316 chr3R 6206506 6206552 BS 13 234 5.0 7.0 6.0 1.9 283 chr3R 6206269 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206552 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-377 2361 chr3R 6283286 6283336 chr3R 6283393 6283443 22 107 4.0 3.5 3.8 4.6 157 chr3R 6283286 intergenic not near genes chr3R 6283364 intergenic not near genes chr3R 6283443 intergenic not near genes chr3R_22_6280001 chr3R_6280001 RAL-377 2362 chr3R 6316776 6316780 chr3R 6316879 6316893 4 110 11.0 5.5 8.2 0.4 117 chr3R 6316776 intron Osi17 + chr3R 6316834 intron Osi17 + chr3R 6316893 intron Osi17 + chr3R_4_6315001 chr3R_6315001 RAL-377 2363 chr3R 6316786 6316808 chr3R 6316869 6316921 8 101 4.0 3.5 3.8 1.7 135 chr3R 6316786 intron Osi17 + chr3R 6316854 intron Osi17 + chr3R 6316921 intron Osi17 + chr3R_8_6315001 chr3R_6315001 RAL-377 2364 chr3R 6428794 6428823 chr3R 6428916 6428945 9 121 10.0 4.0 7.0 1.1 151 chr3R 6428794 intron gpp + chr3R 6428870 intron gpp + chr3R 6428945 intron gpp + chr3R_9_6425001 chr3R_6425001 RAL-377 2365 chr3R 6460203 6460222 chr3R 6460377 6460396 5 174 12.0 6.5 9.2 0.5 193 chr3R 6460203 intergenic not near genes chr3R 6460300 intergenic not near genes chr3R 6460396 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-377 2366 chr3R 6461579 6461587 chr3R 6461679 6461687 4 100 11.5 9.5 10.5 0.3 108 chr3R 6461579 intergenic not near genes chr3R 6461633 intergenic not near genes chr3R 6461687 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-377 2367 chr3R 6461588 6461613 chr3R 6461677 6461713 13 97 3.5 9.0 6.2 1.8 125 chr3R 6461588 intergenic not near genes chr3R 6461650 intergenic not near genes chr3R 6461713 intergenic not near genes chr3R_13_6460001 chr3R_6460001 RAL-377 2368 chr3R 6510007 6510010 chr3R 6515108 6515111 jockey 5 5101 11.5 5.5 8.5 0.5 5104 chr3R 6510007 intergenic not near genes chr3R 6512559 intergenic not near genes chr3R 6515111 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-377 2369 chr3R 6510015 6510049 chr3R 6515107 6515149 jockey 8 5100 7.5 5.5 6.5 1.1 5134 chr3R 6510015 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515149 intergenic not near genes chr3R_8_6510001 chr3R_6510001 RAL-377 2370 chr3R 6541218 6541249 chr3R 6541460 6541491 10 242 2.0 5.0 3.5 2.2 273 chr3R 6541218 intron dpr11 - chr3R 6541354 intron dpr11 - chr3R 6541491 intron dpr11 - chr3R_10_6540001 chr3R_6540001 RAL-377 2371 chr3R 6578869 6578915 chr3R 6579008 6579054 13 138 3.0 3.0 3.0 3.2 185 chr3R 6578869 intron dpr11 - chr3R 6578962 intron dpr11 - chr3R 6579054 intron dpr11 - chr3R_13_6575001 chr3R_6575001 RAL-377 2372 chr3R 6737504 6737527 chr3R 6739285 6739334 Doc 5 1801 0.0 2.0 1.0 2.5 1830 chr3R 6737504 intron pb - chr3R 6738419 intron pb - chr3R 6739334 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-377 2373 chr3R 6803736 6803748 chr3R 6803832 6803844 5 95 0.0 3.0 1.5 2.0 108 chr3R 6803736 intergenic not near genes chr3R 6803790 intergenic not near genes chr3R 6803844 intergenic not near genes chr3R_5_6800001 chr3R_6800001 RAL-377 2374 chr3R 6891241 6891267 chr3R 6891334 6891363 6 94 2.5 7.5 5.0 1.0 122 chr3R 6891241 intergenic not near genes chr3R 6891302 intergenic not near genes chr3R 6891363 intergenic not near genes chr3R_6_6890001 chr3R_6890001 RAL-377 2375 chr3R 6947357 6947406 chr3R 6947476 6947525 19 117 3.0 2.5 2.8 5.0 168 chr3R 6947357 intron Antp - chr3R 6947441 intron Antp - chr3R 6947525 intron Antp - chr3R_19_6945001 chr3R_6945001 RAL-377 2376 chr3R 6978874 6978915 chr3R 6978972 6979020 16 104 4.0 2.0 3.0 4.0 146 chr3R 6978874 intron Antp - chr3R 6978947 intron Antp - chr3R 6979020 intron Antp - chr3R_16_6975001 chr3R_6975001 RAL-377 2377 chr3R 7092763 7092801 chr3R 7093347 7093385 15 583 7.5 5.0 6.2 2.1 622 chr3R 7092763 3` UTR CR43685 - chr3R 7093074 intron CR43685 - chr3R 7093385 3` UTR CR43685 - chr3R_15_7090001 chr3R_7090001 RAL-377 2378 chr3R 7103273 7103317 chr3R 7103361 7103395 7 90 4.0 4.5 4.2 1.3 122 chr3R 7103273 intron Alh - chr3R 7103334 intron Alh - chr3R 7103395 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-377 2379 chr3R 7105299 7105349 chr3R 7105402 7105452 15 102 5.0 4.0 4.5 2.7 153 chr3R 7105299 intron Alh - chr3R 7105376 intron Alh - chr3R 7105452 intron Alh - chr3R_15_7105001 chr3R_7105001 RAL-377 2380 chr3R 7121719 7121737 chr3R 7121822 7121840 5 103 5.5 7.0 6.2 0.7 121 chr3R 7121719 exon Alh - chr3R 7121780 intron Alh - chr3R 7121840 intron Alh - chr3R_5_7120001 chr3R_7120001 RAL-377 2381 chr3R 7126487 7126534 chr3R 7126602 7126649 22 115 4.0 5.0 4.5 4.0 162 chr3R 7126487 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126649 3` UTR CG10068 - chr3R_22_7125001 chr3R_7125001 RAL-377 2382 chr3R 7132820 7132873 chr3R 7132931 7132984 22 110 8.0 6.5 7.2 2.7 164 chr3R 7132820 intergenic CG31493 + chr3R 7132902 intergenic CG31493 + chr3R 7132984 intergenic CG31493 + chr3R_22_7130001 chr3R_7130001 RAL-377 2383 chr3R 7173659 7173708 chr3R 7173759 7173808 12 100 9.0 6.0 7.5 1.4 149 chr3R 7173659 intron sas + chr3R 7173734 intron sas + chr3R 7173808 intron sas + chr3R_12_7170001 chr3R_7170001 RAL-377 2384 chr3R 7217437 7217479 chr3R 7217678 7217704 15 240 6.5 4.0 5.2 2.4 267 chr3R 7217437 intergenic CG14605 -,CG14606 - chr3R 7217570 intergenic CG14605 -,CG14606 - chr3R 7217704 3` UTR CG14605 - chr3R_15_7215001 chr3R_7215001 RAL-377 2385 chr3R 7269895 7269941 chr3R 7270009 7270052 17 113 7.0 6.0 6.5 2.3 157 chr3R 7269895 3` UTR Syt4 + chr3R 7269974 3` UTR Syt4 + chr3R 7270052 3` UTR Syt4 + chr3R_17_7265001 chr3R_7265001 RAL-377 2386 chr3R 7302278 7302326 chr3R 7302389 7302438 7 110 0.5 1.5 1.0 3.5 160 chr3R 7302278 intron rn - chr3R 7302358 intron rn - chr3R 7302438 intron rn - chr3R_7_7300001 chr3R_7300001 RAL-377 2387 chr3R 7404940 7404970 chr3R 7405036 7405066 6 96 0.0 4.0 2.0 2.0 126 chr3R 7404940 intergenic not near genes chr3R 7405003 intergenic not near genes chr3R 7405066 intergenic not near genes chr3R_6_7405001 chr3R_7405001 RAL-377 2388 chr3R 7481814 7481863 chr3R 7481912 7481960 8 93 2.0 3.0 2.5 2.3 146 chr3R 7481814 intergenic not near genes chr3R 7481887 intergenic not near genes chr3R 7481960 intergenic not near genes chr3R_8_7480001 chr3R_7480001 RAL-377 2389 chr3R 7536722 7536728 chr3R 7536858 7536898 5 151 14.5 28.5 21.5 0.2 176 chr3R 7536722 3` UTR alpha-Est4 - chr3R 7536810 exon alpha-Est4 - chr3R 7536898 exon alpha-Est4 - chr3R_5_7535001 chr3R_7535001 RAL-377 2390 chr3R 7625281 7625319 chr3R 7625748 7625787 18 468 4.0 4.0 4.0 3.6 506 chr3R 7625281 intron CG34127 - chr3R 7625534 intron CG34127 - chr3R 7625787 intron CG34127 - chr3R_18_7625001 chr3R_7625001 RAL-377 2391 chr3R 7654986 7655035 chr3R 7655088 7655137 16 102 3.5 3.5 3.5 3.6 151 chr3R 7654986 intergenic not near genes chr3R 7655062 intergenic not near genes chr3R 7655137 intergenic not near genes chr3R_16_7655001 chr3R_7655001 RAL-377 2392 chr3R 7677900 7677945 chr3R 7678030 7678049 14 125 4.0 5.0 4.5 2.5 149 chr3R 7677900 intron Nlg1 + chr3R 7677974 intron Nlg1 + chr3R 7678049 intron Nlg1 + chr3R_14_7675001 chr3R_7675001 RAL-377 2393 chr3R 7694558 7694610 chr3R 7713639 7713691 invader3 14 19080 4.0 4.0 4.0 2.8 19133 chr3R 7694558 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713691 intergenic not near genes chr3R_14_7700001 chr3R_7700001 RAL-377 2394 chr3R 7729446 7729498 chr3R 7737404 7737456 Stalker2 11 7957 2.5 3.5 3.0 2.8 8010 chr3R 7729446 intergenic not near genes chr3R 7733451 intergenic not near genes chr3R 7737456 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-377 2395 chr3R 7814015 7814063 chr3R 7814195 7814243 16 179 4.5 4.5 4.5 2.9 228 chr3R 7814015 intergenic CG34384 + chr3R 7814129 intergenic CG34384 + chr3R 7814243 intergenic CG34384 + chr3R_16_7810001 chr3R_7810001 RAL-377 2396 chr3R 7773344 7773344 chr3R 7890534 7890535 7 117191 21.0 12.0 16.5 0.4 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_7_7830001 chr3R_7830001 RAL-377 2397 chr3R 7948436 7948461 chr3R 7948532 7948558 5 95 1.0 2.5 1.8 1.8 122 chr3R 7948436 intron dsx - chr3R 7948497 intron dsx - chr3R 7948558 intron dsx - chr3R_5_7945001 chr3R_7945001 RAL-377 2398 chr3R 7955923 7955957 chr3R 7956015 7956054 10 96 2.5 3.0 2.8 2.6 131 chr3R 7955923 intron dsx - chr3R 7955988 intron dsx - chr3R 7956054 intron dsx - chr3R_10_7955001 chr3R_7955001 RAL-377 2399 chr3R 7965293 7965337 chr3R 7965400 7965445 18 108 4.0 6.0 5.0 3.0 152 chr3R 7965293 intron dsx - chr3R 7965369 intron dsx - chr3R 7965445 intron dsx - chr3R_18_7965001 chr3R_7965001 RAL-377 2400 chr3R 7973324 7973332 chr3R 7974408 7974416 1360 7 1084 7.5 6.5 7.0 0.9 1092 chr3R 7973324 intergenic not near genes chr3R 7973870 intergenic not near genes chr3R 7974416 3` UTR CD98hc - chr3R_7_7970001 chr3R_7970001 RAL-377 2401 chr3R 8040660 8040676 chr3R 8040750 8040780 5 101 3.5 10.0 6.8 0.6 120 chr3R 8040660 intergenic not near genes chr3R 8040720 intergenic not near genes chr3R 8040780 intergenic CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-377 2402 chr3R 8090251 8090302 chr3R 8090448 8090499 21 197 5.0 3.5 4.2 4.0 248 chr3R 8090251 5` UTR CR44330 + chr3R 8090375 intergenic CR44330 + chr3R 8090499 intergenic CR44330 + chr3R_21_8090001 chr3R_8090001 RAL-377 2403 chr3R 8090552 8090568 chr3R 8094043 8094049 297 7 3492 6.5 13.0 9.8 0.6 3497 chr3R 8090552 intergenic CR44330 + chr3R 8092300 intergenic not near genes chr3R 8094049 intergenic CG7900 + chr3R_7_8090001 chr3R_8090001 RAL-377 2404 chr3R 8094390 8094435 chr3R 8099715 8099760 Transpac 13 5325 6.5 6.0 6.2 1.8 5370 chr3R 8094390 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099760 intron CG7900 + chr3R_13_8095001 chr3R_8095001 RAL-377 2405 chr3R 8101753 8101788 chr3R 8104848 8104892 G2 4 3102 1.5 7.0 4.2 0.8 3139 chr3R 8101753 exon CG7900 + chr3R 8103322 intron CG7900 + chr3R 8104892 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-377 2406 chr3R 8207550 8207585 chr3R 8208405 8208450 F-element 10 859 4.0 2.0 3.0 2.5 900 chr3R 8207550 intergenic not near genes chr3R 8208000 intergenic not near genes chr3R 8208450 intergenic not near genes chr3R_10_8205001 chr3R_8205001 RAL-377 2407 chr3R 8247880 8247929 chr3R 8247982 8248031 16 102 6.5 7.0 6.8 2.1 151 chr3R 8247880 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8247956 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8248031 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_16_8245001 chr3R_8245001 RAL-377 2408 chr3R 8253781 8253821 chr3R 8254054 8254094 18 273 5.5 5.0 5.2 2.9 313 chr3R 8253781 intron mtg + chr3R 8253938 intron mtg + chr3R 8254094 intron mtg + chr3R_18_8250001 chr3R_8250001 RAL-377 2409 chr3R 8283864 8283916 chr3R 8283969 8284021 18 104 8.0 2.0 5.0 3.0 157 chr3R 8283864 intergenic not near genes chr3R 8283942 intergenic not near genes chr3R 8284021 intergenic not near genes chr3R_18_8280001 chr3R_8280001 RAL-377 2410 chr3R 8326544 8326569 chr3R 8326647 8326659 4 100 6.5 3.0 4.8 0.7 115 chr3R 8326544 intron Poxm - chr3R 8326602 intron Poxm - chr3R 8326659 intron Poxm - chr3R_4_8325001 chr3R_8325001 RAL-377 2411 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568289 16.0 16.0 16.0 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-377 2412 chr3R 8363206 8363233 chr3R 8363285 8363320 6 89 3.5 3.5 3.5 1.3 114 chr3R 8363206 exon CG7963 + chr3R 8363263 exon CG7963 + chr3R 8363320 exon CG7963 + chr3R_6_8360001 chr3R_8360001 RAL-377 2413 chr3R 8393558 8393603 chr3R 8393662 8393707 11 98 0.0 4.0 2.0 3.7 149 chr3R 8393558 intron CG45263 - chr3R 8393632 intron CG45263 - chr3R 8393707 intron CG45263 - chr3R_11_8390001 chr3R_8390001 RAL-377 2414 chr3R 8402992 8403036 chr3R 8412178 8412221 roo 12 9183 5.0 4.5 4.8 2.1 9229 chr3R 8402992 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412221 intron CG45263 - chr3R_12_8405001 chr3R_8405001 RAL-377 2415 chr3R 8467982 8468013 chr3R 8468089 8468111 9 104 4.5 5.5 5.0 1.5 129 chr3R 8467982 intron CG45263 - chr3R 8468046 intron CG45263 - chr3R 8468111 intron CG45263 - chr3R_9_8465001 chr3R_8465001 RAL-377 2416 chr3R 8551420 8551425 chr3R 8551531 8551536 6 111 2.5 14.5 8.5 0.6 116 chr3R 8551420 intergenic not near genes chr3R 8551478 intergenic not near genes chr3R 8551536 intergenic not near genes chr3R_6_8550001 chr3R_8550001 RAL-377 2417 chr3R 8552358 8552401 chr3R 8552451 8552501 10 98 2.0 3.5 2.8 2.6 143 chr3R 8552358 intergenic Or85d + chr3R 8552430 intergenic Or85d + chr3R 8552501 intergenic Or85d + chr3R_10_8550001 chr3R_8550001 RAL-377 2418 chr3R 8554774 8554795 chr3R 8554877 8554898 6 103 3.0 4.0 3.5 1.3 124 chr3R 8554774 intergenic not near genes chr3R 8554836 intergenic not near genes chr3R 8554898 intergenic not near genes chr3R_6_8550001 chr3R_8550001 RAL-377 2419 chr3R 8570458 8570508 chr3R 8575114 8575163 HMS-Beagle 5 4651 4.5 4.0 4.2 1.0 4705 chr3R 8570458 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575163 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-377 2420 chr3R 8601775 8601800 chr3R 8610922 8610973 roo 11 9165 5.5 3.0 4.2 2.1 9198 chr3R 8601775 intron 5-HT2B + chr3R 8606374 intron 5-HT2B + chr3R 8610973 intron 5-HT2B + chr3R_11_8605001 chr3R_8605001 RAL-377 2421 chr3R 8636934 8636964 chr3R 8637237 8637287 16 320 3.0 5.5 4.2 3.1 353 chr3R 8636934 intergenic not near genes chr3R 8637110 intergenic not near genes chr3R 8637287 intergenic not near genes chr3R_16_8635001 chr3R_8635001 RAL-377 2422 chr3R 8685282 8685314 chr3R 8685397 8685434 14 120 4.0 4.0 4.0 2.8 152 chr3R 8685282 intron CR44937 - chr3R 8685358 intron CR44937 - chr3R 8685434 intron CR44937 - chr3R_14_8685001 chr3R_8685001 RAL-377 2423 chr3R 8707353 8707384 chr3R 8709814 8709845 jockey 6 2461 3.0 2.5 2.8 1.6 2492 chr3R 8707353 intergenic not near genes chr3R 8708599 intergenic not near genes chr3R 8709845 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-377 2424 chr3R 8798629 8798684 chr3R 8798732 8798787 13 102 2.5 8.0 5.2 2.1 158 chr3R 8798629 intron,intron Pif1A -,Pif1B - chr3R 8798708 intron,intron Pif1A -,Pif1B - chr3R 8798787 intron,intron Pif1A -,Pif1B - chr3R_13_8795001 chr3R_8795001 RAL-377 2425 chr3R 8859597 8859640 chr3R 8859798 8859836 13 201 4.5 6.0 5.2 2.1 239 chr3R 8859597 intron pyd - chr3R 8859716 intron pyd - chr3R 8859836 intron pyd - chr3R_13_8855001 chr3R_8855001 RAL-377 2426 chr3R 8917878 8917905 chr3R 8917973 8918005 12 100 5.0 4.5 4.8 2.1 127 chr3R 8917878 intron pyd - chr3R 8917942 intron pyd - chr3R 8918005 intron pyd - chr3R_12_8915001 chr3R_8915001 RAL-377 2427 chr3R 9036356 9036406 chr3R 9036454 9036504 20 98 6.0 5.0 5.5 3.1 148 chr3R 9036356 intron neur - chr3R 9036430 intron neur - chr3R 9036504 intron neur - chr3R_20_9035001 chr3R_9035001 RAL-377 2428 chr3R 9083138 9083164 chr3R 9083233 9083269 9 103 3.5 2.0 2.8 2.4 131 chr3R 9083138 intron pum - chr3R 9083204 intron pum - chr3R 9083269 intron pum - chr3R_9_9080001 chr3R_9080001 RAL-377 2429 chr3R 9099438 9099477 chr3R 9099542 9099580 5 103 1.0 3.0 2.0 1.7 142 chr3R 9099438 intron pum - chr3R 9099509 intron pum - chr3R 9099580 intron pum - chr3R_5_9095001 chr3R_9095001 RAL-377 2430 chr3R 9101822 9101854 chr3R 9101939 9101972 14 118 11.5 6.0 8.8 1.4 150 chr3R 9101822 intron pum - chr3R 9101897 intron pum - chr3R 9101972 intron pum - chr3R_14_9100001 chr3R_9100001 RAL-377 2431 chr3R 9108845 9108855 chr3R 9108941 9108951 9 96 10.0 4.0 7.0 1.1 106 chr3R 9108845 intron pum - chr3R 9108898 intron pum - chr3R 9108951 intron pum - chr3R_9_9105001 chr3R_9105001 RAL-377 2432 chr3R 9108859 9108884 chr3R 9108953 9108980 10 96 4.0 5.0 4.5 1.8 121 chr3R 9108859 intron pum - chr3R 9108920 intron pum - chr3R 9108980 intron pum - chr3R_10_9105001 chr3R_9105001 RAL-377 2433 chr3R 9141121 9141172 chr3R 9141225 9141276 14 104 2.0 4.0 3.0 3.5 155 chr3R 9141121 intron pum - chr3R 9141198 intron pum - chr3R 9141276 intron pum - chr3R_14_9140001 chr3R_9140001 RAL-377 2434 chr3R 9143019 9143055 chr3R 9143180 9143216 14 161 3.0 5.0 4.0 2.8 197 chr3R 9143019 intron pum - chr3R 9143118 intron pum - chr3R 9143216 intron pum - chr3R_14_9140001 chr3R_9140001 RAL-377 2435 chr3R 9149691 9149712 chr3R 9149761 9149812 4 92 4.0 3.5 3.8 0.8 121 chr3R 9149691 intron pum - chr3R 9149752 intron pum - chr3R 9149812 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-377 2436 chr3R 9204240 9204272 chr3R 9204342 9204379 13 103 5.0 3.0 4.0 2.6 139 chr3R 9204240 intron pum - chr3R 9204310 intron pum - chr3R 9204379 intron pum - chr3R_13_9200001 chr3R_9200001 RAL-377 2437 chr3R 9278771 9278799 chr3R 9284043 9284056 Rt1a 8 5274 6.0 6.5 6.2 1.1 5285 chr3R 9278771 intergenic not near genes chr3R 9281414 intergenic not near genes chr3R 9284056 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-377 2438 chr3R 9294998 9295050 chr3R 9295096 9295148 14 98 4.0 3.5 3.8 2.9 150 chr3R 9294998 3` UTR CG8861 - chr3R 9295073 3` UTR CG8861 - chr3R 9295148 3` UTR CG8861 - chr3R_14_9295001 chr3R_9295001 RAL-377 2439 chr3R 9319557 9319603 chr3R 9320012 9320054 jockey 17 455 3.5 8.0 5.8 2.5 497 chr3R 9319557 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320054 intron CG8861 - chr3R_17_9315001 chr3R_9315001 RAL-377 2440 chr3R 9361806 9361837 chr3R 9362067 9362091 pogo 10 260 7.0 7.5 7.2 1.2 285 chr3R 9361806 3` UTR CG45050 + chr3R 9361948 3` UTR CG45050 + chr3R 9362091 3` UTR CG45050 + chr3R_10_9360001 chr3R_9360001 RAL-377 2441 chr3R 9379124 9379174 chr3R 9379226 9379276 5 102 0.0 0.0 0.0 5.0 152 chr3R 9379124 intron FER - chr3R 9379200 intron FER - chr3R 9379276 intron FER - chr3R_5_9375001 chr3R_9375001 RAL-377 2442 chr3R 9382795 9382845 chr3R 9382940 9382990 17 144 2.5 3.0 2.8 4.5 195 chr3R 9382795 intron FER - chr3R 9382892 intron FER - chr3R 9382990 intron FER - chr3R_17_9380001 chr3R_9380001 RAL-377 2443 chr3R 9447441 9447460 chr3R 9447561 9447584 5 123 4.5 6.0 5.2 0.8 143 chr3R 9447441 intron ps + chr3R 9447512 intron ps + chr3R 9447584 intron ps + chr3R_5_9445001 chr3R_9445001 RAL-377 2444 chr3R 9560761 9560811 chr3R 9560863 9560913 13 102 3.5 3.0 3.2 3.1 152 chr3R 9560761 intron MBD-like + chr3R 9560837 intron MBD-like + chr3R 9560913 intron MBD-like + chr3R_13_9560001 chr3R_9560001 RAL-377 2445 chr3R 9611857 9611893 chr3R 9611959 9611995 17 101 9.0 0.0 4.5 3.1 138 chr3R 9611857 intron CG8312 + chr3R 9611926 intron CG8312 + chr3R 9611995 intron CG8312 + chr3R_17_9610001 chr3R_9610001 RAL-377 2446 chr3R 9644570 9644612 chr3R 9644671 9644713 13 99 4.0 6.0 5.0 2.2 143 chr3R 9644570 intron Dh44 + chr3R 9644642 intron Dh44 + chr3R 9644713 intron Dh44 + chr3R_13_9640001 chr3R_9640001 RAL-377 2447 chr3R 9648875 9648911 chr3R 9648980 9649012 6 104 3.5 2.0 2.8 1.6 137 chr3R 9648875 intron Dh44 + chr3R 9648944 intron Dh44 + chr3R 9649012 exon Dh44 + chr3R_6_9645001 chr3R_9645001 RAL-377 2448 chr3R 9702255 9702291 chr3R 9702337 9702362 5 84 4.5 3.5 4.0 1.0 107 chr3R 9702255 intron Unc-115a - chr3R 9702308 intron Unc-115a - chr3R 9702362 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-377 2449 chr3R 9829390 9829431 chr3R 9829493 9829536 13 105 6.5 3.5 5.0 2.2 146 chr3R 9829390 intron Teh1 - chr3R 9829463 intron Teh1 - chr3R 9829536 intron Teh1 - chr3R_13_9825001 chr3R_9825001 RAL-377 2450 chr3R 9913101 9913148 chr3R 9913445 9913492 10 342 4.0 5.5 4.8 1.7 391 chr3R 9913101 intron Glut4EF + chr3R 9913296 intron Glut4EF + chr3R 9913492 intron Glut4EF + chr3R_10_9910001 chr3R_9910001 RAL-377 2451 chr3R 10161882 10161899 chr3R 10161980 10161982 5 94 7.5 5.0 6.2 0.7 100 chr3R 10161882 3` UTR Best1 - chr3R 10161932 3` UTR Best1 - chr3R 10161982 3` UTR Best1 - chr3R_5_10160001 chr3R_10160001 RAL-377 2452 chr3R 10161901 10161922 chr3R 10161979 10162020 6 92 4.5 5.0 4.8 1.0 119 chr3R 10161901 3` UTR Best1 - chr3R 10161960 3` UTR Best1 - chr3R 10162020 exon Best1 - chr3R_6_10160001 chr3R_10160001 RAL-377 2453 chr3R 10221790 10221834 chr3R 10221889 10221933 9 99 3.5 3.0 3.2 2.1 143 chr3R 10221790 3` UTR Syn + chr3R 10221862 3` UTR Syn + chr3R 10221933 3` UTR Syn + chr3R_9_10220001 chr3R_10220001 RAL-377 2454 chr3R 10231760 10231814 chr3R 10237357 10237411 mdg3 19 5595 8.0 3.5 5.8 2.8 5651 chr3R 10231760 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237411 intron CG42795 + chr3R_19_10230001 chr3R_10230001 RAL-377 2455 chr3R 10255364 10255387 chr3R 10260824 10260847 I-element 10 5460 9.0 5.5 7.2 1.2 5483 chr3R 10255364 3` UTR Sirt6 - chr3R 10258106 intron Sirt6 - chr3R 10260847 exon Sirt6 - chr3R_10_10255001 chr3R_10255001 RAL-377 2456 chr3R 10512347 10512396 chr3R 10512472 10512516 6 125 1.5 2.0 1.8 2.1 169 chr3R 10512347 intron hth - chr3R 10512432 intron hth - chr3R 10512516 intron hth - chr3R_6_10510001 chr3R_10510001 RAL-377 2457 chr3R 10563119 10563148 chr3R 10563219 10563248 6 100 1.5 4.5 3.0 1.5 129 chr3R 10563119 intron hth - chr3R 10563184 intron hth - chr3R 10563248 intron hth - chr3R_6_10560001 chr3R_10560001 RAL-377 2458 chr3R 10641570 10641619 chr3R 10641670 10641718 11 98 2.5 1.0 1.8 3.9 148 chr3R 10641570 5` UTR CR44018 + chr3R 10641644 5` UTR CR44018 + chr3R 10641718 5` UTR CR44018 + chr3R_11_10640001 chr3R_10640001 RAL-377 2459 chr3R 10685556 10685580 chr3R 10685648 10685677 13 96 2.0 4.0 3.0 3.2 121 chr3R 10685556 intergenic not near genes chr3R 10685616 intergenic not near genes chr3R 10685677 intergenic not near genes chr3R_13_10685001 chr3R_10685001 RAL-377 2460 chr3R 10723744 10723787 chr3R 10723856 10723893 17 111 4.0 0.0 2.0 5.7 149 chr3R 10723744 intergenic not near genes chr3R 10723818 intergenic not near genes chr3R 10723893 intergenic not near genes chr3R_17_10720001 chr3R_10720001 RAL-377 2461 chr3R 10727658 10727669 chr3R 10727741 10727769 4 95 2.0 6.0 4.0 0.8 111 chr3R 10727658 intergenic not near genes chr3R 10727714 intergenic not near genes chr3R 10727769 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-377 2462 chr3R 10732308 10732338 chr3R 10733196 10733230 15 891 5.5 4.0 4.8 2.6 922 chr3R 10732308 intergenic not near genes chr3R 10732769 intergenic not near genes chr3R 10733230 intergenic not near genes chr3R_15_10730001 chr3R_10730001 RAL-377 2463 chr3R 10745413 10745449 chr3R 10745514 10745547 6 99 1.0 2.0 1.5 2.4 134 chr3R 10745413 intron TkR86C - chr3R 10745480 intron TkR86C - chr3R 10745547 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-377 2464 chr3R 10804155 10804201 chr3R 10811707 10811753 17.6 16 7552 5.0 4.0 4.5 2.9 7598 chr3R 10804155 intergenic CG14692 - chr3R 10807954 intergenic not near genes chr3R 10811753 3` UTR CG14693 - chr3R_16_10805001 chr3R_10805001 RAL-377 2465 chr3R 10899451 10899473 chr3R 10899546 10899570 5 93 3.0 6.0 4.5 0.9 119 chr3R 10899451 intergenic not near genes chr3R 10899510 intergenic not near genes chr3R 10899570 intergenic not near genes chr3R_5_10895001 chr3R_10895001 RAL-377 2466 chr3R 10919670 10919718 chr3R 10919764 10919816 19 95 4.0 3.5 3.8 4.0 146 chr3R 10919670 intergenic not near genes chr3R 10919743 intergenic not near genes chr3R 10919816 intergenic not near genes chr3R_19_10915001 chr3R_10915001 RAL-377 2467 chr3R 10920033 10920074 chr3R 10920126 10920172 11 94 7.0 4.0 5.5 1.7 139 chr3R 10920033 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920172 intergenic not near genes chr3R_11_10920001 chr3R_10920001 RAL-377 2468 chr3R 10927254 10927303 chr3R 10927602 10927624 11 343 2.0 3.5 2.8 2.9 370 chr3R 10927254 intergenic not near genes chr3R 10927439 intergenic not near genes chr3R 10927624 intergenic not near genes chr3R_11_10925001 chr3R_10925001 RAL-377 2469 chr3R 10979645 10979680 chr3R 10979747 10979782 9 102 3.5 3.5 3.5 2.0 137 chr3R 10979645 intron CG34114 + chr3R 10979714 intron CG34114 + chr3R 10979782 intron CG34114 + chr3R_9_10975001 chr3R_10975001 RAL-377 2470 chr3R 11043076 11043123 chr3R 11043201 11043249 11 124 2.5 2.0 2.2 3.4 173 chr3R 11043076 intron CG34114 + chr3R 11043162 intron CG34114 + chr3R 11043249 intron CG34114 + chr3R_11_11040001 chr3R_11040001 RAL-377 2471 chr3R 11065586 11065618 chr3R 11071262 11071291 297 5 5669 1.0 3.0 2.0 1.7 5705 chr3R 11065586 intergenic not near genes chr3R 11068438 intergenic not near genes chr3R 11071291 intergenic not near genes chr3R_5_11065001 chr3R_11065001 RAL-377 2472 chr3R 11130113 11130143 chr3R 11130222 11130251 4 106 2.0 0.0 1.0 2.0 138 chr3R 11130113 intergenic not near genes chr3R 11130182 intergenic not near genes chr3R 11130251 intergenic not near genes chr3R_4_11130001 chr3R_11130001 RAL-377 2473 chr3R 11174571 11174614 chr3R 11175305 11175348 4 734 17.5 21.5 19.5 0.2 777 chr3R 11174571 exon Ugt86Dj - chr3R 11174960 intron Ugt86Dj - chr3R 11175348 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-377 2474 chr3R 11379219 11379267 chr3R 11388392 11388432 roo 14 9173 5.5 4.0 4.8 2.4 9213 chr3R 11379219 intron pros + chr3R 11383826 intron pros + chr3R 11388432 intron pros + chr3R_14_11380001 chr3R_11380001 RAL-377 2475 chr3R 11406266 11406319 chr3R 11406363 11406416 13 97 3.0 3.0 3.0 3.2 150 chr3R 11406266 3` UTR pros + chr3R 11406341 3` UTR pros + chr3R 11406416 3` UTR pros + chr3R_13_11405001 chr3R_11405001 RAL-377 2476 chr3R 11467506 11467565 chr3R 11467613 11467664 16 102 0.0 5.0 2.5 4.6 158 chr3R 11467506 intergenic not near genes chr3R 11467585 intergenic not near genes chr3R 11467664 intergenic not near genes chr3R_16_11465001 chr3R_11465001 RAL-377 2477 chr3R 11509009 11509048 chr3R 11509527 11509562 11 518 2.5 1.0 1.8 3.9 553 chr3R 11509009 intergenic not near genes chr3R 11509286 intergenic not near genes chr3R 11509562 intergenic not near genes chr3R_11_11505001 chr3R_11505001 RAL-377 2478 chr3R 11549796 11549816 chr3R 11549894 11549914 8 98 7.5 5.0 6.2 1.1 118 chr3R 11549796 intergenic not near genes chr3R 11549855 intergenic not near genes chr3R 11549914 intergenic not near genes chr3R_8_11545001 chr3R_11545001 RAL-377 2479 chr3R 11639207 11639239 chr3R 11639372 11639404 10 165 3.0 5.5 4.2 1.9 197 chr3R 11639207 intron Csk - chr3R 11639306 intron Csk - chr3R 11639404 intron Csk - chr3R_10_11635001 chr3R_11635001 RAL-377 2480 chr3R 11694704 11694749 chr3R 11694817 11694862 26 112 5.0 4.5 4.8 4.5 158 chr3R 11694704 intergenic Fer3 - chr3R 11694783 intergenic Fer3 - chr3R 11694862 intergenic not near genes chr3R_26_11690001 chr3R_11690001 RAL-377 2481 chr3R 11695728 11695773 chr3R 11695825 11695874 17 98 4.0 5.5 4.8 2.9 146 chr3R 11695728 intergenic not near genes chr3R 11695801 intergenic not near genes chr3R 11695874 intergenic not near genes chr3R_17_11695001 chr3R_11695001 RAL-377 2482 chr3R 11834152 11834194 chr3R 11834255 11834297 15 97 4.5 3.0 3.8 3.1 145 chr3R 11834152 intron CG6959 - chr3R 11834224 intron CG6959 - chr3R 11834297 intron CG6959 - chr3R_15_11830001 chr3R_11830001 RAL-377 2483 chr3R 11841055 11841084 chr3R 11846266 11846295 BS 5 5211 3.5 6.5 5.0 0.8 5240 chr3R 11841055 intron CG6959 - chr3R 11843675 intron CG6959 - chr3R 11846295 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-377 2484 chr3R 11916415 11916448 chr3R 11916514 11916547 8 97 4.5 8.0 6.2 1.1 132 chr3R 11916415 intron Cad87A - chr3R 11916481 intron Cad87A - chr3R 11916547 intron Cad87A - chr3R_8_11915001 chr3R_11915001 RAL-377 2485 chr3R 11990636 11990664 chr3R 11990744 11990770 6 108 9.5 3.5 6.5 0.8 134 chr3R 11990636 intron mfas - chr3R 11990703 intron mfas - chr3R 11990770 intron mfas - chr3R_6_11990001 chr3R_11990001 RAL-377 2486 chr3R 11998946 11998960 chr3R 11999081 11999095 10 135 6.0 6.5 6.2 1.4 149 chr3R 11998946 intron Tk - chr3R 11999020 intron Tk - chr3R 11999095 intron Tk - chr3R_10_11995001 chr3R_11995001 RAL-377 2487 chr3R 12022864 12022912 chr3R 12025061 12025109 pogo 16 2195 3.0 6.5 4.8 2.8 2245 chr3R 12022864 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025109 intergenic not near genes chr3R_16_12020001 chr3R_12020001 RAL-377 2488 chr3R 12045160 12045193 chr3R 12045256 12045289 9 96 3.5 2.5 3.0 2.2 129 chr3R 12045160 intergenic not near genes chr3R 12045224 intergenic not near genes chr3R 12045289 intergenic not near genes chr3R_9_12045001 chr3R_12045001 RAL-377 2489 chr3R 12082005 12082027 chr3R 12082077 12082123 9 84 3.0 3.5 3.2 2.1 118 chr3R 12082005 intron CG14741 - chr3R 12082064 intron CG14741 - chr3R 12082123 intron CG14741 - chr3R_9_12080001 chr3R_12080001 RAL-377 2490 chr3R 12111867 12111924 chr3R 12111972 12112020 7 97 0.5 3.0 1.8 2.5 153 chr3R 12111867 intergenic dpr17 + chr3R 12111944 intergenic not near genes chr3R 12112020 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-377 2491 chr3R 12154027 12154082 chr3R 12154443 12154488 13 417 31.0 15.5 23.2 0.5 461 chr3R 12154027 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154488 intron dpr15 - chr3R_13_12150001 chr3R_12150001 RAL-377 2492 chr3R 12169215 12169221 chr3R 12169313 12169319 4 98 13.0 3.0 8.0 0.4 104 chr3R 12169215 intergenic not near genes chr3R 12169267 intergenic not near genes chr3R 12169319 intergenic not near genes chr3R_4_12165001 chr3R_12165001 RAL-377 2493 chr3R 12175215 12175251 chr3R 12175315 12175352 4 101 2.0 1.0 1.5 1.6 137 chr3R 12175215 intergenic not near genes chr3R 12175284 intergenic not near genes chr3R 12175352 intergenic not near genes chr3R_4_12175001 chr3R_12175001 RAL-377 2494 chr3R 12183164 12183207 chr3R 12183270 12183313 11 103 1.5 5.0 3.2 2.6 149 chr3R 12183164 intergenic not near genes chr3R 12183238 intergenic not near genes chr3R 12183313 intergenic not near genes chr3R_11_12180001 chr3R_12180001 RAL-377 2495 chr3R 12267836 12267889 chr3R 12267936 12267989 20 100 3.0 3.0 3.0 5.0 153 chr3R 12267836 intron svp + chr3R 12267912 intron svp + chr3R 12267989 intron svp + chr3R_20_12265001 chr3R_12265001 RAL-377 2496 chr3R 12321954 12322005 chr3R 12322054 12322101 5 96 2.0 3.5 2.8 1.3 147 chr3R 12321954 intergenic not near genes chr3R 12322028 intergenic not near genes chr3R 12322101 intergenic not near genes chr3R_5_12320001 chr3R_12320001 RAL-377 2497 chr3R 12350424 12350473 chr3R 12350524 12350574 14 100 1.5 1.5 1.5 5.6 150 chr3R 12350424 exon CG10038 - chr3R 12350499 exon CG10038 - chr3R 12350574 5` UTR CG10038 - chr3R_14_12350001 chr3R_12350001 RAL-377 2498 chr3R 12364740 12364790 chr3R 12364851 12364901 17 111 2.5 6.0 4.2 3.3 161 chr3R 12364740 intergenic GstD10 -,Tim17a1 - chr3R 12364820 3` UTR GstD10 - chr3R 12364901 3` UTR GstD10 - chr3R_17_12360001 chr3R_12360001 RAL-377 2499 chr3R 12541161 12541194 chr3R 12543311 12543349 11 2150 3.0 5.0 4.0 2.2 2188 chr3R 12541161 intron Octbeta3R - chr3R 12542255 intron Octbeta3R - chr3R 12543349 intron Octbeta3R - chr3R_11_12540001 chr3R_12540001 RAL-377 2500 chr3R 12599008 12599025 chr3R 12599143 12599184 4 152 3.5 2.5 3.0 1.0 176 chr3R 12599008 intergenic not near genes chr3R 12599096 intergenic not near genes chr3R 12599184 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-377 2501 chr3R 12733455 12733505 chr3R 12733552 12733602 4 96 5.0 3.0 4.0 0.8 147 chr3R 12733455 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733602 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-377 2502 chr3R 12733844 12733884 chr3R 12733944 12733984 17 98 3.5 8.0 5.8 2.5 140 chr3R 12733844 intergenic not near genes chr3R 12733914 intergenic not near genes chr3R 12733984 intergenic not near genes chr3R_17_12730001 chr3R_12730001 RAL-377 2503 chr3R 12763118 12763151 chr3R 12763215 12763248 19 97 0.0 8.5 4.2 3.7 130 chr3R 12763118 intron beat-Vc - chr3R 12763183 intron beat-Vc - chr3R 12763248 intron beat-Vc - chr3R_19_12760001 chr3R_12760001 RAL-377 2504 chr3R 12771398 12771439 chr3R 12771544 12771556 9 135 0.5 4.5 2.5 2.6 158 chr3R 12771398 intron beat-Vc - chr3R 12771477 intron beat-Vc - chr3R 12771556 intron beat-Vc - chr3R_9_12770001 chr3R_12770001 RAL-377 2505 chr3R 12787919 12787955 chr3R 12788022 12788051 12 102 5.0 3.0 4.0 2.4 132 chr3R 12787919 intergenic not near genes chr3R 12787985 intergenic not near genes chr3R 12788051 intergenic not near genes chr3R_12_12785001 chr3R_12785001 RAL-377 2506 chr3R 12805840 12805885 chr3R 12805946 12805991 11 106 6.0 4.5 5.2 1.8 151 chr3R 12805840 intergenic not near genes chr3R 12805916 intergenic not near genes chr3R 12805991 intergenic not near genes chr3R_11_12805001 chr3R_12805001 RAL-377 2507 chr3R 12819010 12819051 chr3R 12819112 12819154 7 103 1.5 3.5 2.5 2.0 144 chr3R 12819010 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819154 intergenic not near genes chr3R_7_12815001 chr3R_12815001 RAL-377 2508 chr3R 12864536 12864569 chr3R 12865058 12865091 roo 6 522 2.5 3.5 3.0 1.5 555 chr3R 12864536 intergenic not near genes chr3R 12864814 intergenic not near genes chr3R 12865091 intergenic not near genes chr3R_6_12860001 chr3R_12860001 RAL-377 2509 chr3R 12886901 12886950 chr3R 12887005 12887055 15 104 2.0 2.5 2.2 4.7 154 chr3R 12886901 intergenic not near genes chr3R 12886978 intergenic not near genes chr3R 12887055 intergenic not near genes chr3R_15_12885001 chr3R_12885001 RAL-377 2510 chr3R 12920137 12920181 chr3R 12925360 12925384 copia 9 5218 0.5 7.5 4.0 1.8 5247 chr3R 12920137 intron beat-Vb + chr3R 12922760 intron beat-Vb + chr3R 12925384 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-377 2511 chr3R 12920182 12920185 chr3R 12925353 12925358 copia 7 5188 0.5 6.5 3.5 1.6 5176 chr3R 12920182 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925358 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-377 2512 chr3R 12926716 12926751 chr3R 12926847 12926882 19 130 3.5 4.5 4.0 3.8 166 chr3R 12926716 intron beat-Vb + chr3R 12926799 intron beat-Vb + chr3R 12926882 intron beat-Vb + chr3R_19_12925001 chr3R_12925001 RAL-377 2513 chr3R 12931198 12931245 chr3R 12931294 12931342 20 95 5.5 4.5 5.0 3.3 144 chr3R 12931198 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931270 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931342 intron beat-Vb + chr3R_20_12930001 chr3R_12930001 RAL-377 2514 chr3R 12943957 12944007 chr3R 12944064 12944114 16 107 1.0 4.0 2.5 4.6 157 chr3R 12943957 intergenic not near genes chr3R 12944036 intergenic not near genes chr3R 12944114 intergenic not near genes chr3R_16_12940001 chr3R_12940001 RAL-377 2515 chr3R 12952259 12952316 chr3R 12952404 12952461 9 141 2.0 2.5 2.2 2.8 202 chr3R 12952259 intron grsm - chr3R 12952360 intron grsm - chr3R 12952461 intron grsm - chr3R_9_12950001 chr3R_12950001 RAL-377 2516 chr3R 13059947 13059959 chr3R 13060162 13060174 4 215 4.0 0.0 2.0 1.3 227 chr3R 13059947 intron sim + chr3R 13060060 intron sim + chr3R 13060174 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-377 2517 chr3R 13066989 13067134 chr3R 13067096 13067230 14 101 1.0 0.0 0.5 9.3 241 chr3R 13066989 intron sim + chr3R 13067110 intron sim + chr3R 13067230 intron sim + chr3R_14_13065001 chr3R_13065001 RAL-377 2518 chr3R 13071039 13071083 chr3R 13071146 13071167 13 105 2.5 5.0 3.8 2.7 128 chr3R 13071039 intron sim + chr3R 13071103 intron sim + chr3R 13071167 intron sim + chr3R_13_13070001 chr3R_13070001 RAL-377 2519 chr3R 13075340 13075366 chr3R 13075441 13075467 9 101 4.0 3.0 3.5 2.0 127 chr3R 13075340 intron sim + chr3R 13075404 intron sim + chr3R 13075467 intron sim + chr3R_9_13075001 chr3R_13075001 RAL-377 2520 chr3R 13120754 13120800 chr3R 13120851 13120896 11 94 3.5 5.5 4.5 2.0 142 chr3R 13120754 intron timeout + chr3R 13120825 intron timeout + chr3R 13120896 intron timeout + chr3R_11_13120001 chr3R_13120001 RAL-377 2521 chr3R 13135808 13135859 chr3R 13138003 13138054 pogo 13 2195 6.0 4.5 5.2 2.1 2246 chr3R 13135808 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136931 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_13_13135001 chr3R_13135001 RAL-377 2522 chr3R 13143011 13143059 chr3R 13148608 13148654 mdg3 10 5592 4.0 3.0 3.5 2.2 5643 chr3R 13143011 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148654 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13145001 chr3R_13145001 RAL-377 2523 chr3R 13195932 13195948 chr3R 13196047 13196063 4 114 8.5 2.5 5.5 0.6 131 chr3R 13195932 intergenic not near genes chr3R 13195998 intergenic not near genes chr3R 13196063 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-377 2524 chr3R 13195951 13195965 chr3R 13196046 13196080 6 111 5.0 2.5 3.8 1.2 129 chr3R 13195951 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196080 intergenic not near genes chr3R_6_13195001 chr3R_13195001 RAL-377 2525 chr3R 13248631 13248680 chr3R 13248750 13248799 28 119 7.0 6.5 6.8 3.6 168 chr3R 13248631 intron Ace - chr3R 13248715 intron Ace - chr3R 13248799 intron Ace - chr3R_28_13245001 chr3R_13245001 RAL-377 2526 chr3R 13260706 13260748 chr3R 13260857 13260899 22 149 5.5 5.5 5.5 3.4 193 chr3R 13260706 intron CG11686 + chr3R 13260802 intron CG11686 + chr3R 13260899 intron CG11686 + chr3R_22_13260001 chr3R_13260001 RAL-377 2527 chr3R 13272034 13272078 chr3R 13272139 13272183 11 105 3.5 0.0 1.8 3.9 149 chr3R 13272034 intergenic CG8449 - chr3R 13272108 intergenic CG8449 - chr3R 13272183 intergenic CG8449 - chr3R_11_13270001 chr3R_13270001 RAL-377 2528 chr3R 13274196 13274246 chr3R 13274295 13274345 17 96 4.5 7.5 6.0 2.4 149 chr3R 13274196 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274345 intergenic not near genes chr3R_17_13270001 chr3R_13270001 RAL-377 2529 chr3R 13305640 13305687 chr3R 13305747 13305794 19 107 5.5 7.0 6.2 2.6 154 chr3R 13305640 intron CG32473 + chr3R 13305717 intron CG32473 + chr3R 13305794 intron CG32473 + chr3R_19_13305001 chr3R_13305001 RAL-377 2530 chr3R 13306103 13306153 chr3R 13306510 13306560 16 407 3.0 3.5 3.2 3.8 457 chr3R 13306103 intron CG32473 + chr3R 13306332 intron CG32473 + chr3R 13306560 intron CG32473 + chr3R_16_13305001 chr3R_13305001 RAL-377 2531 chr3R 13314082 13314109 chr3R 13318890 13318917 Doc 7 4808 7.0 4.5 5.8 1.0 4835 chr3R 13314082 intergenic not near genes chr3R 13316500 intergenic not near genes chr3R 13318917 intergenic CG45080 - chr3R_7_13315001 chr3R_13315001 RAL-377 2532 chr3R 13323948 13323987 chr3R 13324067 13324115 17 127 2.5 1.5 2.0 5.7 167 chr3R 13323948 intergenic not near genes chr3R 13324032 intergenic not near genes chr3R 13324115 intergenic not near genes chr3R_17_13320001 chr3R_13320001 RAL-377 2533 chr3R 13326921 13326964 chr3R 13327036 13327074 7 111 4.5 4.5 4.5 1.3 153 chr3R 13326921 intergenic not near genes chr3R 13326998 intergenic not near genes chr3R 13327074 intergenic not near genes chr3R_7_13325001 chr3R_13325001 RAL-377 2534 chr3R 13348984 13349031 chr3R 13349080 13349127 13 92 5.5 4.0 4.8 2.2 143 chr3R 13348984 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349127 intergenic not near genes chr3R_13_13345001 chr3R_13345001 RAL-377 2535 chr3R 13391620 13391666 chr3R 13391718 13391764 12 97 4.0 7.5 5.8 1.8 144 chr3R 13391620 intron CCHa2 - chr3R 13391692 intron CCHa2 - chr3R 13391764 intron CCHa2 - chr3R_12_13390001 chr3R_13390001 RAL-377 2536 chr3R 13435158 13435198 chr3R 13435255 13435295 13 97 0.0 2.5 1.2 5.9 137 chr3R 13435158 intergenic yrt - chr3R 13435226 intergenic yrt - chr3R 13435295 intergenic yrt - chr3R_13_13435001 chr3R_13435001 RAL-377 2537 chr3R 13439576 13439601 chr3R 13439679 13439704 6 103 2.0 3.5 2.8 1.6 128 chr3R 13439576 intergenic CR42756 - chr3R 13439640 intergenic CR42756 - chr3R 13439704 intergenic CR42756 - chr3R_6_13435001 chr3R_13435001 RAL-377 2538 chr3R 13470833 13470876 chr3R 13471182 13471225 17 349 1.0 6.0 3.5 3.8 392 chr3R 13470833 intergenic not near genes chr3R 13471029 intergenic not near genes chr3R 13471225 intergenic not near genes chr3R_17_13470001 chr3R_13470001 RAL-377 2539 chr3R 13517230 13517244 chr3R 13520066 13520080 jockey 6 2836 3.0 3.0 3.0 1.5 2850 chr3R 13517230 intergenic not near genes chr3R 13518655 intergenic not near genes chr3R 13520080 intergenic not near genes chr3R_6_13515001 chr3R_13515001 RAL-377 2540 chr3R 13526684 13526708 chr3R 13526783 13526807 7 99 3.0 8.5 5.8 1.0 123 chr3R 13526684 intergenic not near genes chr3R 13526746 intergenic not near genes chr3R 13526807 intergenic not near genes chr3R_7_13525001 chr3R_13525001 RAL-377 2541 chr3R 13603039 13603075 chr3R 13603150 13603186 14 110 2.5 6.5 4.5 2.5 147 chr3R 13603039 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603186 intergenic not near genes chr3R_14_13600001 chr3R_13600001 RAL-377 2542 chr3R 13609560 13609580 chr3R 13609648 13609694 6 107 0.0 2.0 1.0 3.0 134 chr3R 13609560 intergenic CG9759 - chr3R 13609627 intergenic CG9759 - chr3R 13609694 intergenic CG9759 - chr3R_6_13605001 chr3R_13605001 RAL-377 2543 chr3R 13659716 13659828 chr3R 13659842 13659937 7 119 0.0 0.0 0.0 7.0 221 chr3R 13659716 intron Hrb87F - chr3R 13659826 intron Hrb87F - chr3R 13659937 intron Hrb87F - chr3R_7_13655001 chr3R_13655001 RAL-377 2544 chr3R 13672922 13672936 chr3R 13673020 13673034 5 98 7.5 4.0 5.8 0.7 112 chr3R 13672922 intron Task6 - chr3R 13672978 intron Task6 - chr3R 13673034 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-377 2545 chr3R 13672937 13672973 chr3R 13673019 13673071 16 97 3.0 4.0 3.5 3.6 134 chr3R 13672937 intron Task6 - chr3R 13673004 intron Task6 - chr3R 13673071 intron Task6 - chr3R_16_13670001 chr3R_13670001 RAL-377 2546 chr3R 13693028 13693028 chr3R 21907534 21907536 6 8214507 25.0 16.0 20.5 0.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-377 2547 chr3R 13758130 13758170 chr3R 13758236 13758267 8 105 0.0 4.0 2.0 2.7 137 chr3R 13758130 intron CG34383 + chr3R 13758198 intron CG34383 + chr3R 13758267 intron CG34383 + chr3R_8_13755001 chr3R_13755001 RAL-377 2548 chr3R 13782039 13782043 chr3R 13782140 13782144 5 101 9.0 4.0 6.5 0.7 105 chr3R 13782039 exon CG9286 + chr3R 13782092 intergenic CG9286 +,Dip-B + chr3R 13782144 intergenic CG9286 +,Dip-B + chr3R_5_13780001 chr3R_13780001 RAL-377 2549 chr3R 13782048 13782080 chr3R 13782139 13782181 9 100 5.0 4.0 4.5 1.6 133 chr3R 13782048 exon CG9286 + chr3R 13782114 intergenic CG9286 +,Dip-B + chr3R 13782181 intergenic CG9286 +,Dip-B + chr3R_9_13780001 chr3R_13780001 RAL-377 2550 chr3R 13850291 13850341 chr3R 13850406 13850449 10 107 0.0 3.5 1.8 3.6 158 chr3R 13850291 intergenic not near genes chr3R 13850370 intergenic not near genes chr3R 13850449 intergenic not near genes chr3R_10_13850001 chr3R_13850001 RAL-377 2551 chr3R 13863681 13863713 chr3R 13863777 13863820 9 103 3.5 2.0 2.8 2.4 139 chr3R 13863681 intergenic not near genes chr3R 13863750 intergenic not near genes chr3R 13863820 intergenic not near genes chr3R_9_13860001 chr3R_13860001 RAL-377 2552 chr3R 13909903 13909909 chr3R 13910002 13910008 4 99 1.5 5.0 3.2 1.0 105 chr3R 13909903 intergenic not near genes chr3R 13909956 intergenic not near genes chr3R 13910008 intergenic not near genes chr3R_4_13905001 chr3R_13905001 RAL-377 2553 chr3R 14014266 14014282 chr3R 14014402 14014434 5 149 3.5 0.0 1.8 1.8 168 chr3R 14014266 intron rdx - chr3R 14014350 intron rdx - chr3R 14014434 intron rdx - chr3R_5_14010001 chr3R_14010001 RAL-377 2554 chr3R 14021637 14021660 chr3R 14023469 14023505 S-element 13 1844 7.5 4.0 5.8 1.9 1868 chr3R 14021637 intron rdx - chr3R 14022571 intron rdx - chr3R 14023505 intron rdx - chr3R_13_14020001 chr3R_14020001 RAL-377 2555 chr3R 14029811 14029864 chr3R 14029919 14029972 8 108 2.5 0.0 1.2 3.6 161 chr3R 14029811 intron,exon rdx -,Cyp6d5 + chr3R 14029892 intron,intron rdx -,Cyp6d5 + chr3R 14029972 intron,intron rdx -,Cyp6d5 + chr3R_8_14025001 chr3R_14025001 RAL-377 2556 chr3R 14047753 14047802 chr3R 14047864 14047912 12 111 0.5 4.5 2.5 3.4 159 chr3R 14047753 intergenic not near genes chr3R 14047832 intergenic not near genes chr3R 14047912 intergenic not near genes chr3R_12_14045001 chr3R_14045001 RAL-377 2557 chr3R 7773344 7773344 chr3R 14104440 14104440 6 6331096 21.0 6.0 13.5 0.4 6331096 chr3R 7773344 intergenic not near genes chr3R 10938892 intergenic not near genes chr3R 14104440 intergenic CG12402 - chr3R_6_10935001 chr3R_10935001 RAL-377 2558 chr3R 14117423 14117470 chr3R 14117519 14117566 14 96 4.5 4.5 4.5 2.5 143 chr3R 14117423 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117566 intron Kif19A - chr3R_14_14115001 chr3R_14115001 RAL-377 2559 chr3R 14139975 14139979 chr3R 14140345 14140350 4 370 7.0 7.0 7.0 0.5 375 chr3R 14139975 intergenic not near genes chr3R 14140162 intergenic not near genes chr3R 14140350 intergenic not near genes chr3R_4_14140001 chr3R_14140001 RAL-377 2560 chr3R 14167767 14167809 chr3R 14167853 14167890 11 82 1.0 0.0 0.5 7.3 123 chr3R 14167767 3` UTR Dop1R1 - chr3R 14167828 3` UTR Dop1R1 - chr3R 14167890 3` UTR Dop1R1 - chr3R_11_14165001 chr3R_14165001 RAL-377 2561 chr3R 14170131 14170171 chr3R 14170241 14170281 12 110 5.5 3.0 4.2 2.3 150 chr3R 14170131 3` UTR Dop1R1 - chr3R 14170206 3` UTR Dop1R1 - chr3R 14170281 3` UTR Dop1R1 - chr3R_12_14170001 chr3R_14170001 RAL-377 2562 chr3R 14180792 14180819 chr3R 14185577 14185598 F-element 11 4784 4.5 0.0 2.2 3.4 4806 chr3R 14180792 intron Dop1R1 - chr3R 14183195 intron Dop1R1 - chr3R 14185598 intron Dop1R1 - chr3R_11_14180001 chr3R_14180001 RAL-377 2563 chr3R 14193604 14193613 chr3R 14193913 14193923 5 310 1.5 5.0 3.2 1.2 319 chr3R 14193604 intron Dop1R1 - chr3R 14193764 intron Dop1R1 - chr3R 14193923 intron Dop1R1 - chr3R_5_14190001 chr3R_14190001 RAL-377 2564 chr3R 14217409 14217452 chr3R 14217505 14217548 13 95 4.0 5.0 4.5 2.4 139 chr3R 14217409 intron CG9649 - chr3R 14217478 intron CG9649 - chr3R 14217548 exon CG9649 - chr3R_13_14215001 chr3R_14215001 RAL-377 2565 chr3R 14235682 14235722 chr3R 14235785 14235825 11 103 4.0 4.5 4.2 2.1 143 chr3R 14235682 intergenic not near genes chr3R 14235754 intergenic not near genes chr3R 14235825 intergenic not near genes chr3R_11_14235001 chr3R_14235001 RAL-377 2566 chr3R 14236919 14236933 chr3R 14244437 14244451 Idefix 5 7518 4.0 2.0 3.0 1.2 7532 chr3R 14236919 exon CG43291 - chr3R 14240685 intron CG43291 - chr3R 14244451 intron CG43291 - chr3R_5_14240001 chr3R_14240001 RAL-377 2567 chr3R 14246405 14246407 chr3R 14247908 14247922 jockey 4 1512 4.5 5.5 5.0 0.7 1517 chr3R 14246405 intergenic not near genes chr3R 14247164 intergenic not near genes chr3R 14247922 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-377 2568 chr3R 14258155 14258210 chr3R 14258266 14258310 9 93 0.0 3.5 1.8 3.2 155 chr3R 14258155 intron Aats-met - chr3R 14258232 intron Aats-met - chr3R 14258310 intron Aats-met - chr3R_9_14255001 chr3R_14255001 RAL-377 2569 chr3R 14374556 14374570 chr3R 14374687 14374701 8 131 5.0 2.5 3.8 1.7 145 chr3R 14374556 intergenic not near genes chr3R 14374628 intergenic not near genes chr3R 14374701 intergenic not near genes chr3R_8_14370001 chr3R_14370001 RAL-377 2570 chr3R 14440703 14440755 chr3R 14440799 14440846 16 92 4.0 4.5 4.2 3.1 143 chr3R 14440703 intron cv-c - chr3R 14440774 intron cv-c - chr3R 14440846 intron cv-c - chr3R_16_14440001 chr3R_14440001 RAL-377 2571 chr3R 14497181 14497227 chr3R 14497302 14497353 5 121 2.0 4.0 3.0 1.2 172 chr3R 14497181 intron CR44177 + chr3R 14497267 intron CR44177 + chr3R 14497353 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-377 2572 chr3R 14527399 14527410 chr3R 14527486 14527507 4 94 3.5 3.5 3.5 0.9 108 chr3R 14527399 intron Pde6 - chr3R 14527453 intron Pde6 - chr3R 14527507 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-377 2573 chr3R 14608452 14608476 chr3R 14608564 14608588 12 112 2.5 7.5 5.0 2.0 136 chr3R 14608452 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608588 intergenic not near genes chr3R_12_14605001 chr3R_14605001 RAL-377 2574 chr3R 14616261 14616303 chr3R 14616356 14616399 11 96 3.5 3.5 3.5 2.4 138 chr3R 14616261 intron CG14853 + chr3R 14616330 intron CG14853 + chr3R 14616399 intron CG14853 + chr3R_11_14615001 chr3R_14615001 RAL-377 2575 chr3R 14677667 14677701 chr3R 14677770 14677803 13 102 5.0 6.5 5.8 1.9 136 chr3R 14677667 intron Meltrin - chr3R 14677735 intron Meltrin - chr3R 14677803 intron Meltrin - chr3R_13_14675001 chr3R_14675001 RAL-377 2576 chr3R 14704366 14704409 chr3R 14704463 14704497 7 95 6.0 5.5 5.8 1.0 131 chr3R 14704366 intron kibra - chr3R 14704432 intron kibra - chr3R 14704497 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-377 2577 chr3R 14779049 14779092 chr3R 14779143 14779192 15 99 3.0 3.0 3.0 3.8 143 chr3R 14779049 intron jvl + chr3R 14779120 intron jvl + chr3R 14779192 intron jvl + chr3R_15_14775001 chr3R_14775001 RAL-377 2578 chr3R 14940085 14940122 chr3R 14940239 14940251 6 148 3.0 3.5 3.2 1.4 166 chr3R 14940085 intergenic not near genes chr3R 14940168 intergenic not near genes chr3R 14940251 intergenic not near genes chr3R_6_14940001 chr3R_14940001 RAL-377 2579 chr3R 14968352 14968376 chr3R 14968454 14968478 5 102 0.5 3.0 1.8 1.8 126 chr3R 14968352 intergenic not near genes chr3R 14968415 intergenic not near genes chr3R 14968478 intergenic not near genes chr3R_5_14965001 chr3R_14965001 RAL-377 2580 chr3R 14968377 14968383 chr3R 14968451 14968484 4 95 0.5 2.5 1.5 1.6 107 chr3R 14968377 intergenic not near genes chr3R 14968430 intergenic not near genes chr3R 14968484 intergenic not near genes chr3R_4_14965001 chr3R_14965001 RAL-377 2581 chr3R 15020036 15020043 chr3R 15020144 15020151 4 108 9.5 6.0 7.8 0.5 115 chr3R 15020036 intergenic not near genes chr3R 15020094 intergenic not near genes chr3R 15020151 intergenic not near genes chr3R_4_15020001 chr3R_15020001 RAL-377 2582 chr3R 15020045 15020081 chr3R 15020140 15020189 10 104 3.5 6.0 4.8 1.7 144 chr3R 15020045 intergenic not near genes chr3R 15020117 intergenic not near genes chr3R 15020189 intergenic not near genes chr3R_10_15020001 chr3R_15020001 RAL-377 2583 chr3R 15032454 15032463 chr3R 15032560 15032570 4 107 0.0 2.5 1.2 1.8 116 chr3R 15032454 intergenic not near genes chr3R 15032512 intergenic not near genes chr3R 15032570 intergenic not near genes chr3R_4_15030001 chr3R_15030001 RAL-377 2584 chr3R 15036989 15037026 chr3R 15037087 15037130 11 103 2.0 1.5 1.8 3.9 141 chr3R 15036989 intergenic RpL10Aa + chr3R 15037060 intergenic RpL10Aa + chr3R 15037130 intergenic RpL10Aa + chr3R_11_15035001 chr3R_15035001 RAL-377 2585 chr3R 15041409 15041458 chr3R 15045197 15045231 Doc 12 3787 4.0 1.0 2.5 3.4 3822 chr3R 15041409 intergenic not near genes chr3R 15043320 intergenic not near genes chr3R 15045231 intergenic not near genes chr3R_12_15040001 chr3R_15040001 RAL-377 2586 chr3R 15049434 15049488 chr3R 15049580 15049633 17 145 2.0 5.0 3.5 3.8 199 chr3R 15049434 intergenic not near genes chr3R 15049534 intergenic not near genes chr3R 15049633 intergenic not near genes chr3R_17_15045001 chr3R_15045001 RAL-377 2587 chr3R 15059267 15059277 chr3R 15059498 15059508 BS 5 231 1.5 0.0 0.8 2.8 241 chr3R 15059267 intron dpr9 - chr3R 15059388 intron dpr9 - chr3R 15059508 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-377 2588 chr3R 15071166 15071219 chr3R 15071311 15071364 25 144 4.5 3.0 3.8 5.2 198 chr3R 15071166 intron dpr9 - chr3R 15071265 intron dpr9 - chr3R 15071364 intron dpr9 - chr3R_25_15070001 chr3R_15070001 RAL-377 2589 chr3R 15075853 15075881 chr3R 15075950 15075954 7 94 2.5 1.0 1.8 2.5 101 chr3R 15075853 intron dpr9 - chr3R 15075904 intron dpr9 - chr3R 15075954 intron dpr9 - chr3R_7_15075001 chr3R_15075001 RAL-377 2590 chr3R 15079787 15079825 chr3R 15080048 15080086 pogo 11 261 7.0 1.0 4.0 2.2 299 chr3R 15079787 3` UTR CG6966 - chr3R 15079936 3` UTR CG6966 - chr3R 15080086 3` UTR CG6966 - chr3R_11_15075001 chr3R_15075001 RAL-377 2591 chr3R 15102492 15102529 chr3R 15109770 15109802 412 10 7276 2.5 5.0 3.8 2.1 7310 chr3R 15102492 intron CG42788 - chr3R 15106147 intron CG42788 - chr3R 15109802 intron CG42788 - chr3R_10_15105001 chr3R_15105001 RAL-377 2592 chr3R 15132059 15132089 chr3R 15135145 15135175 Juan 6 3085 5.0 3.5 4.2 1.2 3116 chr3R 15132059 intergenic CG42788 - chr3R 15133617 intergenic not near genes chr3R 15135175 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-377 2593 chr3R 15151130 15151183 chr3R 15151233 15151286 7 103 1.0 5.0 3.0 1.8 156 chr3R 15151130 intron Gyc88E + chr3R 15151208 intron Gyc88E + chr3R 15151286 intron Gyc88E + chr3R_7_15150001 chr3R_15150001 RAL-377 2594 chr3R 15160544 15160594 chr3R 15160662 15160712 20 118 4.0 5.5 4.8 3.4 168 chr3R 15160544 intron Gyc88E + chr3R 15160628 intron Gyc88E + chr3R 15160712 intron Gyc88E + chr3R_20_15160001 chr3R_15160001 RAL-377 2595 chr3R 15190632 15190680 chr3R 15190777 15190825 19 145 6.0 6.0 6.0 2.7 193 chr3R 15190632 3` UTR Gyc88E + chr3R 15190728 3` UTR Gyc88E + chr3R 15190825 3` UTR Gyc88E + chr3R_19_15190001 chr3R_15190001 RAL-377 2596 chr3R 15286985 15286988 chr3R 21907535 21907535 5 6620548 16.0 16.0 16.0 0.3 6620550 chr3R 15286985 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-377 2597 chr3R 15325113 15325171 chr3R 15325228 15325277 14 112 4.5 2.0 3.2 3.3 164 chr3R 15325113 3` UTR ear + chr3R 15325195 3` UTR ear + chr3R 15325277 3` UTR ear + chr3R_14_15325001 chr3R_15325001 RAL-377 2598 chr3R 15376125 15376174 chr3R 15376251 15376300 10 123 4.5 2.5 3.5 2.2 175 chr3R 15376125 intron Rbp + chr3R 15376212 intron Rbp + chr3R 15376300 intron Rbp + chr3R_10_15375001 chr3R_15375001 RAL-377 2599 chr3R 15452256 15452305 chr3R 15452353 15452402 20 95 3.0 4.0 3.5 4.4 146 chr3R 15452256 intron AdamTS-A - chr3R 15452329 intron AdamTS-A - chr3R 15452402 intron AdamTS-A - chr3R_20_15450001 chr3R_15450001 RAL-377 2600 chr3R 15465421 15465431 chr3R 15465517 15465527 5 95 10.0 2.0 6.0 0.7 106 chr3R 15465421 intron AdamTS-A - chr3R 15465474 intron AdamTS-A - chr3R 15465527 intron AdamTS-A - chr3R_5_15465001 chr3R_15465001 RAL-377 2601 chr3R 15473788 15473824 chr3R 15473888 15473923 7 97 6.0 2.5 4.2 1.3 135 chr3R 15473788 intron AdamTS-A - chr3R 15473856 intron AdamTS-A - chr3R 15473923 intron AdamTS-A - chr3R_7_15470001 chr3R_15470001 RAL-377 2602 chr3R 15505610 15505658 chr3R 15505706 15505718 7 87 1.5 3.5 2.5 2.0 108 chr3R 15505610 intergenic not near genes chr3R 15505664 intergenic not near genes chr3R 15505718 intergenic not near genes chr3R_7_15505001 chr3R_15505001 RAL-377 2603 chr3R 15594657 15594675 chr3R 15594753 15594777 8 101 0.0 6.5 3.2 1.9 120 chr3R 15594657 intergenic not near genes chr3R 15594717 intergenic not near genes chr3R 15594777 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-377 2604 chr3R 15601148 15601196 chr3R 15608690 15608723 412 20 7539 7.5 6.0 6.8 2.6 7575 chr3R 15601148 intergenic not near genes chr3R 15604936 intergenic not near genes chr3R 15608723 intergenic not near genes chr3R_20_15600001 chr3R_15600001 RAL-377 2605 chr3R 15618732 15618759 chr3R 15626211 15626253 blood 7 7491 2.5 5.0 3.8 1.5 7521 chr3R 15618732 intergenic not near genes chr3R 15622492 intergenic not near genes chr3R 15626253 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-377 2606 chr3R 15635195 15635237 chr3R 15635316 15635358 8 121 4.0 3.0 3.5 1.8 163 chr3R 15635195 intergenic CG43335 + chr3R 15635276 intergenic CG43335 + chr3R 15635358 intergenic CG43335 + chr3R_8_15635001 chr3R_15635001 RAL-377 2607 chr3R 15636509 15636513 chr3R 15636705 15636709 4 196 3.5 0.0 1.8 1.4 200 chr3R 15636509 intergenic CG43335 + chr3R 15636609 intergenic CG43335 + chr3R 15636709 intergenic CG43335 +,CG43336 + chr3R_4_15635001 chr3R_15635001 RAL-377 2608 chr3R 15646776 15646799 chr3R 15646879 15646902 11 103 1.0 8.5 4.8 1.9 126 chr3R 15646776 intergenic not near genes chr3R 15646839 intergenic not near genes chr3R 15646902 intergenic not near genes chr3R_11_15645001 chr3R_15645001 RAL-377 2609 chr3R 15670759 15670783 chr3R 15671112 15671136 6 352 3.0 5.0 4.0 1.2 377 chr3R 15670759 intron pxb + chr3R 15670948 intron pxb + chr3R 15671136 intron pxb + chr3R_6_15670001 chr3R_15670001 RAL-377 2610 chr3R 15691168 15691327 chr3R 15691293 15691434 18 111 0.0 0.0 0.0 18.0 266 chr3R 15691168 intergenic not near genes chr3R 15691301 intergenic not near genes chr3R 15691434 intergenic not near genes chr3R_18_15690001 chr3R_15690001 RAL-377 2611 chr3R 15702877 15702892 chr3R 15703087 15703102 4 210 0.0 8.5 4.2 0.8 225 chr3R 15702877 intergenic not near genes chr3R 15702990 intergenic not near genes chr3R 15703102 intergenic not near genes chr3R_4_15700001 chr3R_15700001 RAL-377 2612 chr3R 15715784 15715835 chr3R 15715889 15715939 15 103 3.0 2.5 2.8 3.9 155 chr3R 15715784 exon CG31294 - chr3R 15715862 intron CG31294 - chr3R 15715939 exon CG31294 - chr3R_15_15715001 chr3R_15715001 RAL-377 2613 chr3R 15716836 15716870 chr3R 15716952 15716981 5 112 4.5 5.0 4.8 0.9 145 chr3R 15716836 intergenic CG31294 - chr3R 15716908 intergenic CG31294 - chr3R 15716981 intergenic CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-377 2614 chr3R 15735224 15735236 chr3R 15739964 15739976 F-element 8 4740 4.5 5.0 4.8 1.4 4752 chr3R 15735224 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739976 intergenic not near genes chr3R_8_15735001 chr3R_15735001 RAL-377 2615 chr3R 15878079 15878101 chr3R 15878187 15878209 10 107 1.5 1.5 1.5 4.0 130 chr3R 15878079 intergenic not near genes chr3R 15878144 intergenic not near genes chr3R 15878209 intergenic not near genes chr3R_10_15875001 chr3R_15875001 RAL-377 2616 chr3R 15892638 15892688 chr3R 15892733 15892789 15 100 4.5 5.5 5.0 2.5 151 chr3R 15892638 intron CG14877 - chr3R 15892714 intron CG14877 - chr3R 15892789 intron CG14877 - chr3R_15_15890001 chr3R_15890001 RAL-377 2617 chr3R 15942649 15942692 chr3R 15943048 15943091 13 398 4.0 5.0 4.5 2.4 442 chr3R 15942649 intron Sap47 + chr3R 15942870 intron Sap47 + chr3R 15943091 intron Sap47 + chr3R_13_15940001 chr3R_15940001 RAL-377 2618 chr3R 16024485 16024519 chr3R 16024566 16024598 7 85 2.0 5.0 3.5 1.6 113 chr3R 16024485 intergenic not near genes chr3R 16024542 intergenic not near genes chr3R 16024598 intergenic not near genes chr3R_7_16020001 chr3R_16020001 RAL-377 2619 chr3R 16195539 16195581 chr3R 16195777 16195822 6 240 1.5 3.5 2.5 1.7 283 chr3R 16195539 intron sra + chr3R 16195680 intron sra + chr3R 16195822 intron sra + chr3R_6_16195001 chr3R_16195001 RAL-377 2620 chr3R 16225068 16225119 chr3R 16225173 16225223 17 105 3.5 6.0 4.8 2.9 155 chr3R 16225068 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225223 intergenic tara + chr3R_17_16225001 chr3R_16225001 RAL-377 2621 chr3R 16241764 16241818 chr3R 16242046 16242101 22 282 4.0 5.5 4.8 3.8 337 chr3R 16241764 intron tara + chr3R 16241932 intron tara + chr3R 16242101 intron tara + chr3R_22_16240001 chr3R_16240001 RAL-377 2622 chr3R 16246525 16246556 chr3R 16246621 16246648 7 94 1.0 12.0 6.5 0.9 123 chr3R 16246525 intron tara + chr3R 16246586 intron tara + chr3R 16246648 intron tara + chr3R_7_16245001 chr3R_16245001 RAL-377 2623 chr3R 16368432 16368482 chr3R 16368530 16368581 22 98 3.0 3.0 3.0 5.5 149 chr3R 16368432 intergenic CG14880 -,CG10317 - chr3R 16368506 intergenic CG14880 -,CG10317 - chr3R 16368581 intergenic CG10317 -,CG14880 - chr3R_22_16365001 chr3R_16365001 RAL-377 2624 chr3R 16472569 16472592 chr3R 16472656 16472662 5 84 6.5 6.5 6.5 0.7 93 chr3R 16472569 intergenic Gyc-89Da + chr3R 16472616 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-377 2625 chr3R 16519910 16519927 chr3R 16520021 16520031 8 112 8.0 3.0 5.5 1.2 121 chr3R 16519910 intron CG42342 + chr3R 16519970 intron CG42342 + chr3R 16520031 intron CG42342 + chr3R_8_16515001 chr3R_16515001 RAL-377 2626 chr3R 16582887 16582916 chr3R 16582986 16583013 8 98 3.0 4.0 3.5 1.8 126 chr3R 16582887 intron Scp2 - chr3R 16582950 intron Scp2 - chr3R 16583013 intron Scp2 - chr3R_8_16580001 chr3R_16580001 RAL-377 2627 chr3R 16732126 16732179 chr3R 16732242 16732295 10 116 0.0 5.0 2.5 2.9 169 chr3R 16732126 intron Ubx - chr3R 16732210 intron Ubx - chr3R 16732295 intron Ubx - chr3R_10_16730001 chr3R_16730001 RAL-377 2628 chr3R 16734855 16734878 chr3R 16734958 16734981 7 103 0.0 4.0 2.0 2.3 126 chr3R 16734855 intergenic Ubx - chr3R 16734918 intergenic Ubx - chr3R 16734981 intergenic not near genes chr3R_7_16730001 chr3R_16730001 RAL-377 2629 chr3R 16756307 16756343 chr3R 16762517 16762554 diver 5 6209 2.5 1.0 1.8 1.8 6247 chr3R 16756307 intron bxd - chr3R 16759430 intron bxd - chr3R 16762554 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-377 2630 chr3R 16860330 16860363 chr3R 16860428 16860461 10 98 3.0 0.0 1.5 4.0 131 chr3R 16860330 intron iab-8 - chr3R 16860396 intron iab-8 - chr3R 16860461 intron iab-8 - chr3R_10_16860001 chr3R_16860001 RAL-377 2631 chr3R 17121503 17121556 chr3R 17121718 17121770 18 214 5.0 2.0 3.5 4.0 267 chr3R 17121503 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121770 intron,exon cher -,CG42779 + chr3R_18_17120001 chr3R_17120001 RAL-377 2632 chr3R 17163455 17163501 chr3R 17163556 17163602 16 101 3.0 4.5 3.8 3.3 147 chr3R 17163455 intron Mur89F - chr3R 17163528 intron Mur89F - chr3R 17163602 intron Mur89F - chr3R_16_17160001 chr3R_17160001 RAL-377 2633 chr3R 17209686 17209703 chr3R 17209794 17209811 9 107 10.5 11.0 10.8 0.8 125 chr3R 17209686 intergenic not near genes chr3R 17209748 intergenic not near genes chr3R 17209811 intergenic not near genes chr3R_9_17205001 chr3R_17205001 RAL-377 2634 chr3R 17294653 17294695 chr3R 17295101 17295142 BS 8 446 2.5 4.0 3.2 1.9 489 chr3R 17294653 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295142 intergenic not near genes chr3R_8_17290001 chr3R_17290001 RAL-377 2635 chr3R 17342871 17342921 chr3R 17342975 17343010 13 102 4.5 4.0 4.2 2.5 139 chr3R 17342871 intron beat-IIa - chr3R 17342940 intron beat-IIa - chr3R 17343010 intron beat-IIa - chr3R_13_17340001 chr3R_17340001 RAL-377 2636 chr3R 17346678 17346715 chr3R 17348261 17348298 F-element 14 1583 8.0 4.0 6.0 2.0 1620 chr3R 17346678 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348298 intron beat-IIa - chr3R_14_17345001 chr3R_17345001 RAL-377 2637 chr3R 17355473 17355503 chr3R 17355571 17355591 5 96 4.0 2.5 3.2 1.2 118 chr3R 17355473 intron beat-IIa - chr3R 17355532 intron beat-IIa - chr3R 17355591 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-377 2638 chr3R 17416457 17416471 chr3R 17416558 17416572 7 101 4.0 0.0 2.0 2.3 115 chr3R 17416457 exon CG5866 + chr3R 17416514 intergenic CG5866 + chr3R 17416572 intergenic CG5866 + chr3R_7_17415001 chr3R_17415001 RAL-377 2639 chr3R 17457598 17457641 chr3R 17457697 17457741 13 99 3.0 3.0 3.0 3.2 143 chr3R 17457598 intergenic not near genes chr3R 17457670 intergenic not near genes chr3R 17457741 intergenic not near genes chr3R_13_17455001 chr3R_17455001 RAL-377 2640 chr3R 17519722 17519769 chr3R 17519837 17519880 9 113 1.0 2.5 1.8 3.2 158 chr3R 17519722 intergenic not near genes chr3R 17519801 intergenic not near genes chr3R 17519880 intergenic not near genes chr3R_9_17515001 chr3R_17515001 RAL-377 2641 chr3R 17546068 17546109 chr3R 17546172 17546212 8 98 2.5 5.0 3.8 1.7 144 chr3R 17546068 intron Prx3 - chr3R 17546140 intron Prx3 - chr3R 17546212 exon Prx3 - chr3R_8_17545001 chr3R_17545001 RAL-377 2642 chr3R 17587192 17587231 chr3R 17587395 17587434 9 198 7.5 4.0 5.8 1.3 242 chr3R 17587192 intergenic not near genes chr3R 17587313 intergenic not near genes chr3R 17587434 intergenic not near genes chr3R_9_17585001 chr3R_17585001 RAL-377 2643 chr3R 17591284 17591299 chr3R 17591725 17591754 F-element 6 450 7.5 3.5 5.5 0.9 470 chr3R 17591284 intergenic not near genes chr3R 17591519 intergenic not near genes chr3R 17591754 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-377 2644 chr3R 17647225 17647272 chr3R 17647342 17647389 18 117 5.0 3.5 4.2 3.5 164 chr3R 17647225 intergenic CG14322 + chr3R 17647307 intergenic CG14322 + chr3R 17647389 intergenic CG14322 + chr3R_18_17645001 chr3R_17645001 RAL-377 2645 chr3R 17655436 17655482 chr3R 17655551 17655597 8 115 2.0 8.0 5.0 1.3 161 chr3R 17655436 intron CG14322 + chr3R 17655516 intron CG14322 + chr3R 17655597 intron CG14322 + chr3R_8_17655001 chr3R_17655001 RAL-377 2646 chr3R 17729713 17729759 chr3R 17729810 17729856 13 94 2.5 5.5 4.0 2.6 143 chr3R 17729713 intron Lgr1 + chr3R 17729784 intron Lgr1 + chr3R 17729856 intron Lgr1 + chr3R_13_17725001 chr3R_17725001 RAL-377 2647 chr3R 17734822 17734859 chr3R 17734956 17734993 9 134 4.5 0.5 2.5 2.6 171 chr3R 17734822 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17734993 intergenic not near genes chr3R_9_17730001 chr3R_17730001 RAL-377 2648 chr3R 17811179 17811202 chr3R 17811279 17811302 13 98 6.5 0.0 3.2 3.1 123 chr3R 17811179 intergenic CG18012 -,tinc + chr3R 17811240 intergenic CG18012 -,tinc + chr3R 17811302 intergenic CG18012 -,tinc + chr3R_13_17810001 chr3R_17810001 RAL-377 2649 chr3R 17823193 17823219 chr3R 17823298 17823324 8 105 4.0 7.5 5.8 1.2 131 chr3R 17823193 intron tinc + chr3R 17823258 intron tinc + chr3R 17823324 intron tinc + chr3R_8_17820001 chr3R_17820001 RAL-377 2650 chr3R 17845099 17845215 chr3R 17845207 17845312 7 98 0.0 1.0 0.5 4.7 213 chr3R 17845099 intron tinc + chr3R 17845206 intron tinc + chr3R 17845312 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-377 2651 chr3R 17899073 17899090 chr3R 17899171 17899173 7 96 8.0 5.5 6.8 0.9 100 chr3R 17899073 intron Rim - chr3R 17899123 intron Rim - chr3R 17899173 intron Rim - chr3R_7_17895001 chr3R_17895001 RAL-377 2652 chr3R 17913102 17913148 chr3R 17913217 17913263 8 115 0.0 3.0 1.5 3.2 161 chr3R 17913102 intron Rim - chr3R 17913182 intron Rim - chr3R 17913263 intron Rim - chr3R_8_17910001 chr3R_17910001 RAL-377 2653 chr3R 17919567 17919602 chr3R 17919660 17919701 9 93 3.0 2.5 2.8 2.4 134 chr3R 17919567 intergenic cpo + chr3R 17919634 intergenic cpo + chr3R 17919701 intergenic cpo + chr3R_9_17915001 chr3R_17915001 RAL-377 2654 chr3R 17925840 17925872 chr3R 17927327 17927359 hobo 8 1486 3.0 5.0 4.0 1.6 1519 chr3R 17925840 intron cpo + chr3R 17926600 intron cpo + chr3R 17927359 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-377 2655 chr3R 18025323 18025364 chr3R 18025419 18025464 13 100 1.5 3.0 2.2 4.1 141 chr3R 18025323 3` UTR CG7794 + chr3R 18025394 intergenic CG7794 + chr3R 18025464 intergenic CG7794 + chr3R_13_18025001 chr3R_18025001 RAL-377 2656 chr3R 18041740 18041765 chr3R 18041837 18041862 9 97 0.0 0.0 0.0 9.0 122 chr3R 18041740 intergenic not near genes chr3R 18041801 intergenic not near genes chr3R 18041862 intergenic not near genes chr3R_9_18040001 chr3R_18040001 RAL-377 2657 chr3R 18051269 18051301 chr3R 18051368 18051400 12 99 5.0 5.0 5.0 2.0 131 chr3R 18051269 intron htl - chr3R 18051334 intron htl - chr3R 18051400 intron htl - chr3R_12_18050001 chr3R_18050001 RAL-377 2658 chr3R 18061598 18061615 chr3R 18063186 18063203 F-element 7 1588 0.0 0.0 0.0 7.0 1605 chr3R 18061598 intergenic not near genes chr3R 18062400 intergenic not near genes chr3R 18063203 intergenic not near genes chr3R_7_18060001 chr3R_18060001 RAL-377 2659 chr3R 18122880 18122917 chr3R 18122977 18123014 5 97 3.5 4.5 4.0 1.0 134 chr3R 18122880 intron sr + chr3R 18122947 intron sr + chr3R 18123014 intron sr + chr3R_5_18120001 chr3R_18120001 RAL-377 2660 chr3R 18143475 18143513 chr3R 18143582 18143621 9 107 0.0 2.0 1.0 4.5 146 chr3R 18143475 intergenic not near genes chr3R 18143548 intergenic not near genes chr3R 18143621 intergenic not near genes chr3R_9_18140001 chr3R_18140001 RAL-377 2661 chr3R 18215424 18215429 chr3R 18377651 18377655 5 162227 9.0 0.0 4.5 0.9 162231 chr3R 18215424 intergenic CG7985 + chr3R 18296540 intron l(3)05822 - chr3R 18377655 intergenic CG7675 - chr3R_5_18295001 chr3R_18295001 RAL-377 2662 chr3R 18262731 18262766 chr3R 18262833 18262866 9 102 5.5 2.5 4.0 1.8 135 chr3R 18262731 intergenic not near genes chr3R 18262798 intergenic not near genes chr3R 18262866 intergenic not near genes chr3R_9_18260001 chr3R_18260001 RAL-377 2663 chr3R 18331761 18331771 chr3R 18333275 18333285 hopper2 6 1514 14.0 3.0 8.5 0.6 1524 chr3R 18331761 3` UTR CG15803 - chr3R 18332523 intron CG15803 - chr3R 18333285 3` UTR CG15803 - chr3R_6_18330001 chr3R_18330001 RAL-377 2664 chr3R 18338979 18339028 chr3R 18339103 18339152 20 124 0.0 4.5 2.2 6.2 173 chr3R 18338979 intron CG15803 - chr3R 18339066 intron CG15803 - chr3R 18339152 intron CG15803 - chr3R_20_18335001 chr3R_18335001 RAL-377 2665 chr3R 18464294 18464337 chr3R 18464450 18464496 4 158 0.0 8.0 4.0 0.8 202 chr3R 18464294 intron fru - chr3R 18464395 intron fru - chr3R 18464496 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-377 2666 chr3R 18481030 18481063 chr3R 18481131 18481180 14 115 3.0 6.0 4.5 2.5 150 chr3R 18481030 intron fru - chr3R 18481105 intron fru - chr3R 18481180 intron fru - chr3R_14_18480001 chr3R_18480001 RAL-377 2667 chr3R 18501579 18501624 chr3R 18501675 18501725 20 101 4.5 6.0 5.2 3.2 146 chr3R 18501579 intron fru - chr3R 18501652 intron fru - chr3R 18501725 intron fru - chr3R_20_18500001 chr3R_18500001 RAL-377 2668 chr3R 18562551 18562588 chr3R 18562690 18562728 6 139 3.5 4.0 3.8 1.2 177 chr3R 18562551 intergenic not near genes chr3R 18562640 intergenic not near genes chr3R 18562728 intergenic not near genes chr3R_6_18560001 chr3R_18560001 RAL-377 2669 chr3R 18603923 18603968 chr3R 18604020 18604065 12 97 3.0 4.0 3.5 2.7 142 chr3R 18603923 intron,intron qin +,CG14304 - chr3R 18603994 intron,intron qin +,CG14304 - chr3R 18604065 intron,intron qin +,CG14304 - chr3R_12_18600001 chr3R_18600001 RAL-377 2670 chr3R 18606494 18606529 chr3R 18610740 18610781 F-element 17 4251 4.0 7.5 5.8 2.5 4287 chr3R 18606494 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610781 intron,intron qin +,CG14304 - chr3R_17_18605001 chr3R_18605001 RAL-377 2671 chr3R 18618246 18618294 chr3R 18618351 18618399 14 105 3.5 4.5 4.0 2.8 153 chr3R 18618246 intron,intron qin +,CG14304 - chr3R 18618322 intron,intron qin +,CG14304 - chr3R 18618399 intron,intron qin +,CG14304 - chr3R_14_18615001 chr3R_18615001 RAL-377 2672 chr3R 18695744 18695754 chr3R 18695848 18695858 4 104 8.0 0.0 4.0 0.8 114 chr3R 18695744 3` UTR CG34282 + chr3R 18695801 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-377 2673 chr3R 18730018 18730036 chr3R 18730107 18730132 5 93 2.0 3.5 2.8 1.3 114 chr3R 18730018 intron Cha + chr3R 18730075 intron Cha + chr3R 18730132 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-377 2674 chr3R 18781696 18781722 chr3R 18781767 18781818 5 91 6.5 1.5 4.0 1.0 122 chr3R 18781696 intron CG7720 - chr3R 18781757 intron CG7720 - chr3R 18781818 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-377 2675 chr3R 18782745 18782766 chr3R 18782859 18782880 6 114 7.0 6.5 6.8 0.8 135 chr3R 18782745 intron CG7720 - chr3R 18782812 intron CG7720 - chr3R 18782880 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-377 2676 chr3R 18791493 18791511 chr3R 18791574 18791604 7 91 3.5 0.0 1.8 2.5 111 chr3R 18791493 intron CG7720 - chr3R 18791548 intron CG7720 - chr3R 18791604 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-377 2677 chr3R 18807313 18807334 chr3R 18807409 18807430 7 96 1.5 0.0 0.8 3.9 117 chr3R 18807313 intron CG18208 - chr3R 18807372 intron CG18208 - chr3R 18807430 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-377 2678 chr3R 18812063 18812087 chr3R 18812155 18812185 9 93 3.5 5.0 4.2 1.7 122 chr3R 18812063 intron CG18208 - chr3R 18812124 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-377 2679 chr3R 18817487 18817538 chr3R 18817605 18817656 17 118 0.0 0.0 0.0 17.0 169 chr3R 18817487 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817656 intron CG18208 - chr3R_17_18815001 chr3R_18815001 RAL-377 2680 chr3R 18829903 18829949 chr3R 18830059 18830105 7 156 2.0 6.0 4.0 1.4 202 chr3R 18829903 intron CG18208 - chr3R 18830004 intron CG18208 - chr3R 18830105 intron CG18208 - chr3R_7_18830001 chr3R_18830001 RAL-377 2681 chr3R 19033927 19033932 chr3R 19034010 19034030 4 90 5.5 7.0 6.2 0.6 103 chr3R 19033927 intron CG6026 + chr3R 19033978 intron CG6026 + chr3R 19034030 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-377 2682 chr3R 19033936 19033956 chr3R 19034008 19034054 4 85 4.0 6.5 5.2 0.6 118 chr3R 19033936 intron CG6026 + chr3R 19033995 intron CG6026 + chr3R 19034054 intron CG6026 + chr3R_4_19030001 chr3R_19030001 RAL-377 2683 chr3R 19106804 19106843 chr3R 19106914 19106920 4 97 4.0 0.0 2.0 1.3 116 chr3R 19106804 intron CG6040 + chr3R 19106862 intron CG6040 + chr3R 19106920 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-377 2684 chr3R 19117043 19117050 chr3R 19117207 19117214 5 163 10.0 0.0 5.0 0.8 171 chr3R 19117043 intron CG6040 + chr3R 19117128 intron CG6040 + chr3R 19117214 intron CG6040 + chr3R_5_19115001 chr3R_19115001 RAL-377 2685 chr3R 19186202 19186236 chr3R 19186462 19186494 6 260 1.0 2.0 1.5 2.4 292 chr3R 19186202 intron CG31475 + chr3R 19186348 intron CG31475 + chr3R 19186494 intron CG31475 + chr3R_6_19185001 chr3R_19185001 RAL-377 2686 chr3R 19244160 19244195 chr3R 19247508 19247543 4 3352 12.5 24.5 18.5 0.2 3383 chr3R 19244160 exon unc79 - chr3R 19245852 intron unc79 - chr3R 19247543 exon CG5217 - chr3R_4_19245001 chr3R_19245001 RAL-377 2687 chr3R 19344645 19344699 chr3R 19344800 19344854 14 155 6.0 5.5 5.8 2.1 209 chr3R 19344645 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344854 intergenic not near genes chr3R_14_19340001 chr3R_19340001 RAL-377 2688 chr3R 19364416 19364452 chr3R 19364585 19364618 4 168 1.5 3.0 2.2 1.2 202 chr3R 19364416 intergenic not near genes chr3R 19364517 intergenic not near genes chr3R 19364618 intergenic not near genes chr3R_4_19360001 chr3R_19360001 RAL-377 2689 chr3R 19431496 19431498 chr3R 19431600 19431602 4 104 2.5 13.0 7.8 0.5 106 chr3R 19431496 intron CG31221 + chr3R 19431549 intron CG31221 + chr3R 19431602 intron CG31221 + chr3R_4_19430001 chr3R_19430001 RAL-377 2690 chr3R 19532974 19533025 chr3R 19533186 19533237 9 209 3.0 0.0 1.5 3.6 263 chr3R 19532974 intron Dys + chr3R 19533106 intron Dys + chr3R 19533237 intron Dys + chr3R_9_19530001 chr3R_19530001 RAL-377 2691 chr3R 19581624 19581655 chr3R 19581723 19581745 8 99 5.0 0.0 2.5 2.3 121 chr3R 19581624 intron Dys + chr3R 19581684 intron Dys + chr3R 19581745 intron Dys + chr3R_8_19580001 chr3R_19580001 RAL-377 2692 chr3R 19590628 19590683 chr3R 19590740 19590788 5 109 0.0 3.5 1.8 1.8 160 chr3R 19590628 exon Dys + chr3R 19590708 intron Dys + chr3R 19590788 exon Dys + chr3R_5_19590001 chr3R_19590001 RAL-377 2693 chr3R 19591516 19591550 chr3R 19591616 19591651 4 101 2.0 0.0 1.0 2.0 135 chr3R 19591516 intron Dys + chr3R 19591584 intron Dys + chr3R 19591651 intron Dys + chr3R_4_19590001 chr3R_19590001 RAL-377 2694 chr3R 19593487 19593515 chr3R 19593592 19593619 14 104 5.5 1.5 3.5 3.1 132 chr3R 19593487 intron Dys + chr3R 19593553 intron Dys + chr3R 19593619 intron Dys + chr3R_14_19590001 chr3R_19590001 RAL-377 2695 chr3R 19607030 19607064 chr3R 19608055 19608089 11 1025 24.0 24.5 24.2 0.4 1059 chr3R 19607030 intergenic CG17751 + chr3R 19607560 intron CG17751 + chr3R 19608089 intron CG17751 + chr3R_11_19605001 chr3R_19605001 RAL-377 2696 chr3R 19606535 19606574 chr3R 19609628 19609670 21 3094 29.0 37.0 33.0 0.6 3135 chr3R 19606535 intergenic CG7342 + chr3R 19608102 intron CG17751 + chr3R 19609670 intergenic CG17751 + chr3R_21_19605001 chr3R_19605001 RAL-377 2697 chr3R 19702303 19702354 chr3R 19702405 19702456 14 102 6.0 2.0 4.0 2.8 153 chr3R 19702303 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702456 intergenic not near genes chr3R_14_19700001 chr3R_19700001 RAL-377 2698 chr3R 19783163 19783212 chr3R 19783271 19783315 20 108 2.5 2.0 2.2 6.2 152 chr3R 19783163 intergenic CG11407 +,CG11453 + chr3R 19783239 intergenic CG11407 +,CG11453 + chr3R 19783315 intergenic CG11407 +,CG11453 + chr3R_20_19780001 chr3R_19780001 RAL-377 2699 chr3R 19830872 19830890 chr3R 19830969 19830987 5 97 0.5 5.5 3.0 1.2 115 chr3R 19830872 intron bnl - chr3R 19830930 intron bnl - chr3R 19830987 intron bnl - chr3R_5_19830001 chr3R_19830001 RAL-377 2700 chr3R 19858966 19858994 chr3R 19859167 19859195 6 199 2.0 6.0 4.0 1.2 229 chr3R 19858966 intron Ire1 - chr3R 19859080 intron Ire1 - chr3R 19859195 intron Ire1 - chr3R_6_19855001 chr3R_19855001 RAL-377 2701 chr3R 19981442 19981452 chr3R 19981542 19981552 7 100 1.0 4.0 2.5 2.0 110 chr3R 19981442 intron Hs6st - chr3R 19981497 intron Hs6st - chr3R 19981552 intron Hs6st - chr3R_7_19980001 chr3R_19980001 RAL-377 2702 chr3R 20008805 20008848 chr3R 20008906 20008949 19 100 6.0 5.0 5.5 2.9 144 chr3R 20008805 intergenic MED25 +,Hs6st - chr3R 20008877 intergenic MED25 +,Hs6st - chr3R 20008949 5` UTR MED25 + chr3R_19_20005001 chr3R_20005001 RAL-377 2703 chr3R 20020136 20020144 chr3R 20020296 20020306 5 162 11.0 4.5 7.8 0.6 170 chr3R 20020136 intron CG4433 - chr3R 20020221 intron CG4433 - chr3R 20020306 intron CG4433 - chr3R_5_20020001 chr3R_20020001 RAL-377 2704 chr3R 20020146 20020178 chr3R 20020294 20020340 14 156 5.0 3.5 4.2 2.7 194 chr3R 20020146 intron CG4433 - chr3R 20020243 intron CG4433 - chr3R 20020340 intron CG4433 - chr3R_14_20020001 chr3R_20020001 RAL-377 2705 chr3R 20060613 20060655 chr3R 20060714 20060758 17 102 5.0 3.0 4.0 3.4 145 chr3R 20060613 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060758 intergenic not near genes chr3R_17_20060001 chr3R_20060001 RAL-377 2706 chr3R 20077018 20077068 chr3R 20077124 20077174 14 105 1.0 4.5 2.8 3.7 156 chr3R 20077018 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077174 intergenic not near genes chr3R_14_20075001 chr3R_20075001 RAL-377 2707 chr3R 20088083 20088135 chr3R 20088252 20088304 15 169 3.5 4.0 3.8 3.1 221 chr3R 20088083 intergenic not near genes chr3R 20088194 intergenic not near genes chr3R 20088304 intergenic not near genes chr3R_15_20085001 chr3R_20085001 RAL-377 2708 chr3R 20092751 20092798 chr3R 20092874 20092901 12 120 4.0 1.5 2.8 3.2 150 chr3R 20092751 intergenic not near genes chr3R 20092826 intergenic not near genes chr3R 20092901 intergenic not near genes chr3R_12_20090001 chr3R_20090001 RAL-377 2709 chr3R 20093682 20093733 chr3R 20093779 20093830 9 94 2.5 2.0 2.2 2.8 148 chr3R 20093682 intergenic not near genes chr3R 20093756 intergenic not near genes chr3R 20093830 intergenic not near genes chr3R_9_20090001 chr3R_20090001 RAL-377 2710 chr3R 20109515 20109568 chr3R 20114741 20114794 copia 14 5225 3.5 5.5 4.5 2.5 5279 chr3R 20109515 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114794 intergenic CG10887 + chr3R_14_20110001 chr3R_20110001 RAL-377 2711 chr3R 20132528 20132551 chr3R 20132684 20132706 5 156 3.5 3.0 3.2 1.2 178 chr3R 20132528 intergenic not near genes chr3R 20132617 intergenic not near genes chr3R 20132706 intergenic not near genes chr3R_5_20130001 chr3R_20130001 RAL-377 2712 chr3R 20132959 20132968 chr3R 20133055 20133064 4 96 6.0 0.0 3.0 1.0 105 chr3R 20132959 intergenic not near genes chr3R 20133012 intergenic not near genes chr3R 20133064 intergenic not near genes chr3R_4_20130001 chr3R_20130001 RAL-377 2713 chr3R 20156677 20156718 chr3R 20165867 20165908 roo 12 9186 2.5 6.5 4.5 2.2 9231 chr3R 20156677 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165908 intergenic not near genes chr3R_12_20160001 chr3R_20160001 RAL-377 2714 chr3R 20177779 20177817 chr3R 20177871 20177918 9 100 4.5 1.0 2.8 2.4 139 chr3R 20177779 intergenic not near genes chr3R 20177848 intergenic not near genes chr3R 20177918 intergenic not near genes chr3R_9_20175001 chr3R_20175001 RAL-377 2715 chr3R 20245269 20245298 chr3R 20248899 20248928 F-element 8 3630 6.0 1.0 3.5 1.8 3659 chr3R 20245269 3` UTR Nlg4 + chr3R 20247098 intergenic not near genes chr3R 20248928 intergenic not near genes chr3R_8_20245001 chr3R_20245001 RAL-377 2716 chr3R 20252224 20252252 chr3R 20252322 20252350 14 98 0.0 0.0 0.0 14.0 126 chr3R 20252224 intergenic not near genes chr3R 20252287 intergenic cic + chr3R 20252350 intergenic cic + chr3R_14_20250001 chr3R_20250001 RAL-377 2717 chr3R 20256845 20256871 chr3R 20256943 20256969 15 97 0.0 10.0 5.0 2.5 124 chr3R 20256845 intron cic + chr3R 20256907 intron cic + chr3R 20256969 intron cic + chr3R_15_20255001 chr3R_20255001 RAL-377 2718 chr3R 20266501 20266543 chr3R 20272992 20273034 Burdock 19 6491 3.5 5.0 4.2 3.7 6533 chr3R 20266501 intron cic + chr3R 20269768 intron cic + chr3R 20273034 intron cic + chr3R_19_20265001 chr3R_20265001 RAL-377 2719 chr3R 20282255 20282308 chr3R 20282351 20282404 17 96 0.5 3.5 2.0 5.7 149 chr3R 20282255 intron cic + chr3R 20282330 intron cic + chr3R 20282404 intron cic + chr3R_17_20280001 chr3R_20280001 RAL-377 2720 chr3R 20308173 20308185 chr3R 20308281 20308293 5 108 7.5 0.0 3.8 1.0 120 chr3R 20308173 intergenic not near genes chr3R 20308233 intergenic not near genes chr3R 20308293 intergenic not near genes chr3R_5_20305001 chr3R_20305001 RAL-377 2721 chr3R 20308187 20308219 chr3R 20308280 20308338 4 112 4.5 0.0 2.2 1.2 151 chr3R 20308187 intergenic not near genes chr3R 20308262 intergenic not near genes chr3R 20308338 intergenic not near genes chr3R_4_20305001 chr3R_20305001 RAL-377 2722 chr3R 20312838 20312884 chr3R 20312944 20312987 12 105 4.0 1.5 2.8 3.2 149 chr3R 20312838 intron CG42668 + chr3R 20312912 intron CG42668 + chr3R 20312987 intron CG42668 + chr3R_12_20310001 chr3R_20310001 RAL-377 2723 chr3R 20330980 20331027 chr3R 20331486 20331533 roo 14 506 4.0 6.0 5.0 2.3 553 chr3R 20330980 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331533 intergenic not near genes chr3R_14_20330001 chr3R_20330001 RAL-377 2724 chr3R 20499794 20499840 chr3R 20499893 20499939 20 99 3.0 5.0 4.0 4.0 145 chr3R 20499794 intergenic Dic2 - chr3R 20499866 intergenic Dic2 - chr3R 20499939 intergenic Dic2 - chr3R_20_20495001 chr3R_20495001 RAL-377 2725 chr3R 20512329 20512352 chr3R 20512432 20512444 5 100 12.0 5.5 8.8 0.5 115 chr3R 20512329 intron CG4288 - chr3R 20512386 5` UTR CG4288 - chr3R 20512444 5` UTR CG4288 - chr3R_5_20510001 chr3R_20510001 RAL-377 2726 chr3R 20512356 20512362 chr3R 20512430 20512440 4 84 9.5 5.5 7.5 0.5 84 chr3R 20512356 5` UTR CG4288 - chr3R 20512398 5` UTR CG4288 - chr3R 20512440 5` UTR CG4288 - chr3R_4_20510001 chr3R_20510001 RAL-377 2727 chr3R 20512986 20513033 chr3R 20515709 20515756 opus 17 2723 9.0 3.5 6.2 2.4 2770 chr3R 20512986 intergenic not near genes chr3R 20514371 intergenic not near genes chr3R 20515756 intergenic not near genes chr3R_17_20510001 chr3R_20510001 RAL-377 2728 chr3R 20594462 20594497 chr3R 20594572 20594599 5 108 3.5 0.0 1.8 1.8 137 chr3R 20594462 intron bon + chr3R 20594530 intron bon + chr3R 20594599 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-377 2729 chr3R 20596172 20596212 chr3R 20596279 20596319 18 106 5.5 4.5 5.0 3.0 147 chr3R 20596172 intron bon + chr3R 20596246 intron bon + chr3R 20596319 intron bon + chr3R_18_20595001 chr3R_20595001 RAL-377 2730 chr3R 20602584 20602626 chr3R 20602689 20602714 18 104 2.0 4.5 3.2 4.3 130 chr3R 20602584 intron bon + chr3R 20602649 intron bon + chr3R 20602714 intron bon + chr3R_18_20600001 chr3R_20600001 RAL-377 2731 chr3R 20675746 20675791 chr3R 20675865 20675915 9 116 4.0 3.0 3.5 2.0 169 chr3R 20675746 intergenic CG4000 - chr3R 20675830 intergenic CG4000 - chr3R 20675915 intergenic CG4000 - chr3R_9_20675001 chr3R_20675001 RAL-377 2732 chr3R 20682545 20682590 chr3R 20682806 20682864 22 270 4.5 3.5 4.0 4.4 319 chr3R 20682545 intergenic not near genes chr3R 20682704 intergenic not near genes chr3R 20682864 intergenic not near genes chr3R_22_20680001 chr3R_20680001 RAL-377 2733 chr3R 20684196 20684239 chr3R 20684300 20684343 13 104 6.5 6.5 6.5 1.7 147 chr3R 20684196 intergenic not near genes chr3R 20684270 intergenic not near genes chr3R 20684343 intergenic not near genes chr3R_13_20680001 chr3R_20680001 RAL-377 2734 chr3R 20708732 20708783 chr3R 20708837 20708885 16 105 2.5 2.0 2.2 5.0 153 chr3R 20708732 intron Oamb - chr3R 20708808 intron Oamb - chr3R 20708885 intron Oamb - chr3R_16_20705001 chr3R_20705001 RAL-377 2735 chr3R 20730908 20731060 chr3R 20731028 20731168 16 112 0.0 0.0 0.0 16.0 260 chr3R 20730908 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731168 intergenic CG31205 + chr3R_16_20730001 chr3R_20730001 RAL-377 2736 chr3R 20771704 20771725 chr3R 20771800 20771825 6 94 0.0 5.0 2.5 1.7 121 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771764 intron,intron Syp +,Takl1 - chr3R 20771825 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-377 2737 chr3R 20787430 20787458 chr3R 20787540 20787569 11 110 2.5 3.5 3.0 2.8 139 chr3R 20787430 intron Syp + chr3R 20787500 intron Syp + chr3R 20787569 intron Syp + chr3R_11_20785001 chr3R_20785001 RAL-377 2738 chr3R 20794002 20794055 chr3R 20794099 20794143 9 91 4.5 0.5 2.5 2.6 141 chr3R 20794002 intron Syp + chr3R 20794072 intron Syp + chr3R 20794143 intron Syp + chr3R_9_20790001 chr3R_20790001 RAL-377 2739 chr3R 20799577 20799620 chr3R 20799677 20799704 14 98 10.0 6.0 8.0 1.6 127 chr3R 20799577 intron Syp + chr3R 20799640 intron Syp + chr3R 20799704 intron Syp + chr3R_14_20795001 chr3R_20795001 RAL-377 2740 chr3R 20847758 20847805 chr3R 20848013 20848060 7 255 3.5 1.5 2.5 2.0 302 chr3R 20847758 intergenic CG15696 + chr3R 20847909 intergenic CG15696 + chr3R 20848060 intergenic CG15696 + chr3R_7_20845001 chr3R_20845001 RAL-377 2741 chr3R 20854478 20854517 chr3R 20859279 20859321 Doc 9 4803 7.0 5.0 6.0 1.3 4843 chr3R 20854478 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859321 exon Ir93a - chr3R_9_20855001 chr3R_20855001 RAL-377 2742 chr3R 20870231 20870284 chr3R 20870336 20870384 11 105 5.0 6.5 5.8 1.6 153 chr3R 20870231 intergenic not near genes chr3R 20870308 intergenic not near genes chr3R 20870384 intergenic not near genes chr3R_11_20870001 chr3R_20870001 RAL-377 2743 chr3R 20874507 20874550 chr3R 20874612 20874655 15 105 2.5 5.5 4.0 3.0 148 chr3R 20874507 3` UTR TotB + chr3R 20874581 intergenic TotB + chr3R 20874655 intergenic TotB + chr3R_15_20870001 chr3R_20870001 RAL-377 2744 chr3R 20901322 20901375 chr3R 20901428 20901476 16 104 2.0 3.5 2.8 4.2 154 chr3R 20901322 intergenic not near genes chr3R 20901399 intergenic not near genes chr3R 20901476 intergenic CG5621 + chr3R_16_20900001 chr3R_20900001 RAL-377 2745 chr3R 20966131 20966156 chr3R 20966234 20966259 13 103 0.0 7.0 3.5 2.9 128 chr3R 20966131 intron Atpalpha + chr3R 20966195 intron Atpalpha + chr3R 20966259 intron Atpalpha + chr3R_13_20965001 chr3R_20965001 RAL-377 2746 chr3R 21020383 21020428 chr3R 21020479 21020524 22 96 8.0 9.0 8.5 2.3 141 chr3R 21020383 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020524 3` UTR Rlip + chr3R_22_21020001 chr3R_21020001 RAL-377 2747 chr3R 21108031 21108065 chr3R 21108312 21108336 10 280 2.0 7.5 4.8 1.7 305 chr3R 21108031 intergenic Sec15 -,rtet + chr3R 21108184 intergenic Sec15 -,rtet + chr3R 21108336 intergenic rtet +,Sec15 - chr3R_10_21105001 chr3R_21105001 RAL-377 2748 chr3R 21129799 21130017 chr3R 21129908 21130114 10 104 0.5 0.0 0.2 8.3 315 chr3R 21129799 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129956 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130114 intergenic Ice2 +,Obp93a - chr3R_10_21125001 chr3R_21125001 RAL-377 2749 chr3R 21132612 21132647 chr3R 21132715 21132750 6 103 4.5 0.0 2.2 1.9 138 chr3R 21132612 3` UTR Ice2 + chr3R 21132681 3` UTR Ice2 + chr3R 21132750 3` UTR CG7009 - chr3R_6_21130001 chr3R_21130001 RAL-377 2750 chr3R 21141665 21141701 chr3R 21150166 21150182 Tirant 4 8484 4.0 1.5 2.8 1.1 8517 chr3R 21141665 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150182 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-377 2751 chr3R 21150784 21150835 chr3R 21150939 21150988 15 155 3.5 4.0 3.8 3.1 204 chr3R 21150784 intron SNF4Agamma + chr3R 21150886 intron SNF4Agamma + chr3R 21150988 intron SNF4Agamma + chr3R_15_21150001 chr3R_21150001 RAL-377 2752 chr3R 21154531 21154585 chr3R 21154756 21154820 15 233 4.0 0.0 2.0 5.0 289 chr3R 21154531 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154820 intron SNF4Agamma + chr3R_15_21150001 chr3R_21150001 RAL-377 2753 chr3R 21163250 21163271 chr3R 21163348 21163357 7 95 3.0 9.0 6.0 1.0 107 chr3R 21163250 intron SNF4Agamma + chr3R 21163304 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-377 2754 chr3R 21214726 21214756 chr3R 21214918 21214948 9 192 9.5 3.0 6.2 1.2 222 chr3R 21214726 intergenic CG5862 + chr3R 21214837 intergenic CG5862 + chr3R 21214948 intergenic CG5862 + chr3R_9_21210001 chr3R_21210001 RAL-377 2755 chr3R 21239791 21239953 chr3R 21239905 21240041 10 105 0.0 0.0 0.0 10.0 250 chr3R 21239791 intergenic not near genes chr3R 21239916 intergenic not near genes chr3R 21240041 intergenic not near genes chr3R_10_21235001 chr3R_21235001 RAL-377 2756 chr3R 21245834 21245866 chr3R 21245938 21245970 10 102 6.0 5.5 5.8 1.5 136 chr3R 21245834 intergenic CG5892 + chr3R 21245902 intergenic CG5892 + chr3R 21245970 intergenic not near genes chr3R_10_21245001 chr3R_21245001 RAL-377 2757 chr3R 21322959 21322990 chr3R 21323058 21323069 6 96 0.0 1.5 0.8 3.3 110 chr3R 21322959 exon CG16791 - chr3R 21323014 intron CG16791 - chr3R 21323069 intron CG16791 - chr3R_6_21320001 chr3R_21320001 RAL-377 2758 chr3R 21330781 21330828 chr3R 21330891 21330938 14 109 3.5 4.0 3.8 2.9 157 chr3R 21330781 intron CG16791 - chr3R 21330860 intron CG16791 - chr3R 21330938 intron CG16791 - chr3R_14_21330001 chr3R_21330001 RAL-377 2759 chr3R 21359891 21359925 chr3R 21360001 21360035 17 109 0.0 11.0 5.5 2.6 144 chr3R 21359891 intron mod(mdg4) - chr3R 21359963 intron mod(mdg4) - chr3R 21360035 intron mod(mdg4) - chr3R_17_21355001 chr3R_21355001 RAL-377 2760 chr3R 21393433 21393441 chr3R 21393575 21393583 4 142 4.0 0.0 2.0 1.3 150 chr3R 21393433 intergenic not near genes chr3R 21393508 intergenic not near genes chr3R 21393583 intergenic not near genes chr3R_4_21390001 chr3R_21390001 RAL-377 2761 chr3R 21464389 21464427 chr3R 21464495 21464531 7 105 4.0 2.0 3.0 1.8 142 chr3R 21464389 intergenic not near genes chr3R 21464460 intergenic not near genes chr3R 21464531 intergenic not near genes chr3R_7_21460001 chr3R_21460001 RAL-377 2762 chr3R 21472013 21472034 chr3R 21472108 21472135 6 100 6.0 7.5 6.8 0.8 122 chr3R 21472013 intergenic not near genes chr3R 21472074 intergenic not near genes chr3R 21472135 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-377 2763 chr3R 21518005 21518267 chr3R 21518154 21518371 8 136 0.0 0.0 0.0 8.0 366 chr3R 21518005 intergenic not near genes chr3R 21518188 intergenic not near genes chr3R 21518371 intergenic not near genes chr3R_8_21515001 chr3R_21515001 RAL-377 2764 chr3R 21519971 21519975 chr3R 21520092 21520096 4 121 11.0 0.5 5.8 0.6 125 chr3R 21519971 intergenic not near genes chr3R 21520034 intergenic not near genes chr3R 21520096 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-377 2765 chr3R 21519976 21520132 chr3R 21520089 21520246 23 117 1.0 0.5 0.8 12.8 270 chr3R 21519976 intergenic not near genes chr3R 21520111 intergenic not near genes chr3R 21520246 intergenic not near genes chr3R_23_21520001 chr3R_21520001 RAL-377 2766 chr3R 21725666 21725680 chr3R 21725822 21725836 6 156 0.0 7.5 3.8 1.2 170 chr3R 21725666 intergenic not near genes chr3R 21725751 intergenic not near genes chr3R 21725836 intergenic not near genes chr3R_6_21725001 chr3R_21725001 RAL-377 2767 chr3R 21731783 21731825 chr3R 21731911 21731952 6 127 7.5 0.0 3.8 1.2 169 chr3R 21731783 intergenic not near genes chr3R 21731868 intergenic not near genes chr3R 21731952 intergenic not near genes chr3R_6_21730001 chr3R_21730001 RAL-377 2768 chr3R 21736559 21736564 chr3R 21739932 21739941 7 3364 26.0 28.5 27.2 0.2 3382 chr3R 21736559 3` UTR CG42869 - chr3R 21738250 intergenic CG34034 - chr3R 21739941 intergenic CG5849 + chr3R_7_21735001 chr3R_21735001 RAL-377 2769 chr3R 21761109 21761146 chr3R 21768511 21768522 mdg1 7 7402 7.5 4.0 5.8 1.0 7413 chr3R 21761109 exon CG42335 + chr3R 21764816 intron CG42335 + chr3R 21768522 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-377 2770 chr3R 21800469 21800520 chr3R 21800574 21800610 20 104 6.0 6.5 6.2 2.8 141 chr3R 21800469 intron CASK - chr3R 21800540 intron CASK - chr3R 21800610 intron CASK - chr3R_20_21800001 chr3R_21800001 RAL-377 2771 chr3R 21820440 21820454 chr3R 21820568 21820572 5 126 11.5 2.5 7.0 0.6 132 chr3R 21820440 intron CASK - chr3R 21820506 intron CASK - chr3R 21820572 intron CASK - chr3R_5_21820001 chr3R_21820001 RAL-377 2772 chr3R 21820458 21820477 chr3R 21820565 21820584 7 115 7.0 2.5 4.8 1.2 126 chr3R 21820458 intron CASK - chr3R 21820521 intron CASK - chr3R 21820584 intron CASK - chr3R_7_21820001 chr3R_21820001 RAL-377 2773 chr3R 21845276 21845312 chr3R 21845376 21845412 11 100 5.0 8.0 6.5 1.5 136 chr3R 21845276 intergenic Gr93c -,CR44087 +,Gr93d - chr3R 21845344 intergenic Gr93c -,CR44087 +,Gr93d - chr3R 21845412 intergenic CR44087 +,Gr93d -,Gr93c - chr3R_11_21845001 chr3R_21845001 RAL-377 2774 chr3R 21903613 21903632 chr3R 21903730 21903749 6 117 0.0 7.0 3.5 1.3 136 chr3R 21903613 intron CG6678 + chr3R 21903681 intron CG6678 + chr3R 21903749 intron CG6678 + chr3R_6_21900001 chr3R_21900001 RAL-377 2775 chr3R 8339241 8339247 chr3R 21907534 21907534 5 13568289 16.0 16.0 16.0 0.3 13568293 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-377 2776 chr3R 21907534 21907534 chr3R 28831801 28831802 14 6924268 21.5 13.5 17.5 0.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-377 2777 chr3R 9393034 9393034 chr3R 21907535 21907535 4 12514501 16.5 16.0 16.2 0.2 12514501 chr3R 9393034 intron FER - chr3R 15650284 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15650001 chr3R_15650001 RAL-377 2778 chr3R 9620956 9620961 chr3R 21907535 21907535 4 12286578 22.5 16.0 19.2 0.2 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-377 2779 chr3R 21907535 21907535 chr3R 28831801 28831802 31 6924266 21.0 13.5 17.2 1.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_31_25365001 chr3R_25365001 RAL-377 2780 chr3R 21907536 21907536 chr3R 28831801 28831802 28 6924266 21.0 13.5 17.2 1.5 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-377 2781 chr3R 21937209 21937234 chr3R 21937306 21937330 14 97 1.5 3.0 2.2 4.4 121 chr3R 21937209 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937330 intergenic not near genes chr3R_14_21935001 chr3R_21935001 RAL-377 2782 chr3R 21960887 21960937 chr3R 21961097 21961147 11 210 3.5 3.5 3.5 2.4 260 chr3R 21960887 exon Eip93F + chr3R 21961017 intron Eip93F + chr3R 21961147 intron Eip93F + chr3R_11_21960001 chr3R_21960001 RAL-377 2783 chr3R 22055093 22055121 chr3R 22055207 22055235 9 113 7.0 4.5 5.8 1.3 142 chr3R 22055093 intron how + chr3R 22055164 intron how + chr3R 22055235 intron how + chr3R_9_22055001 chr3R_22055001 RAL-377 2784 chr3R 22084605 22084625 chr3R 22084714 22084734 8 109 0.5 5.5 3.0 2.0 129 chr3R 22084605 intergenic not near genes chr3R 22084670 intergenic not near genes chr3R 22084734 intergenic not near genes chr3R_8_22080001 chr3R_22080001 RAL-377 2785 chr3R 22234687 22234703 chr3R 22236010 22236042 pogo 5 1334 6.5 5.5 6.0 0.7 1355 chr3R 22234687 intron SKIP + chr3R 22235364 intron SKIP + chr3R 22236042 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-377 2786 chr3R 22234704 22234712 chr3R 22236009 22236050 pogo 6 1333 5.5 5.5 5.5 0.9 1346 chr3R 22234704 intron SKIP + chr3R 22235377 intron SKIP + chr3R 22236050 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-377 2787 chr3R 22239475 22239522 chr3R 22248555 22248602 roo 14 9080 3.5 4.5 4.0 2.8 9127 chr3R 22239475 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248602 intron SKIP + chr3R_14_22240001 chr3R_22240001 RAL-377 2788 chr3R 22330606 22330613 chr3R 22332302 22332321 4 1695 27.5 17.5 22.5 0.2 1715 chr3R 22330606 intergenic CG7080 +,CG33721 + chr3R 22331464 exon CG33721 + chr3R 22332321 exon CG13862 + chr3R_4_22330001 chr3R_22330001 RAL-377 2789 chr3R 22330605 22330642 chr3R 22332325 22332340 5 1695 29.0 14.5 21.8 0.2 1735 chr3R 22330605 intergenic CG7080 +,CG33721 + chr3R 22331472 exon CG33721 + chr3R 22332340 exon CG13862 + chr3R_5_22330001 chr3R_22330001 RAL-377 2790 chr3R 22433077 22433103 chr3R 22433192 22433223 12 115 5.0 7.0 6.0 1.7 146 chr3R 22433077 intron CG13847 - chr3R 22433150 intron CG13847 - chr3R 22433223 intron CG13847 - chr3R_12_22430001 chr3R_22430001 RAL-377 2791 chr3R 22437771 22437824 chr3R 22437881 22437933 17 108 0.0 3.0 1.5 6.8 162 chr3R 22437771 intergenic not near genes chr3R 22437852 intergenic not near genes chr3R 22437933 intergenic not near genes chr3R_17_22435001 chr3R_22435001 RAL-377 2792 chr3R 22450524 22450571 chr3R 22453183 22453218 NOF 15 2655 3.0 3.0 3.0 3.8 2694 chr3R 22450524 intron CG34376 + chr3R 22451871 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_15_22450001 chr3R_22450001 RAL-377 2793 chr3R 22538424 22538470 chr3R 22538529 22538571 14 103 3.0 4.5 3.8 2.9 147 chr3R 22538424 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538571 intron CG5326 - chr3R_14_22535001 chr3R_22535001 RAL-377 2794 chr3R 22769076 22769120 chr3R 22769173 22769217 17 96 5.0 5.0 5.0 2.8 141 chr3R 22769076 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769217 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_17_22765001 chr3R_22765001 RAL-377 2795 chr3R 22779458 22779497 chr3R 22779554 22779595 11 95 5.0 3.0 4.0 2.2 137 chr3R 22779458 intron,3` UTR CG7029 +,CR43654 - chr3R 22779526 intron,3` UTR CG7029 +,CR43654 - chr3R 22779595 intron,3` UTR CG7029 +,CR43654 - chr3R_11_22775001 chr3R_22775001 RAL-377 2796 chr3R 22803427 22803469 chr3R 22803628 22803680 11 209 4.0 2.5 3.2 2.6 253 chr3R 22803427 intergenic not near genes chr3R 22803554 intergenic not near genes chr3R 22803680 intergenic not near genes chr3R_11_22800001 chr3R_22800001 RAL-377 2797 chr3R 22827398 22827446 chr3R 22827494 22827537 9 91 5.0 2.5 3.8 1.9 139 chr3R 22827398 intergenic CR44350 - chr3R 22827468 intergenic CR44350 - chr3R 22827537 intergenic CR44350 - chr3R_9_22825001 chr3R_22825001 RAL-377 2798 chr3R 22846781 22846811 chr3R 22847022 22847041 10 237 6.0 4.0 5.0 1.7 260 chr3R 22846781 intergenic CG4704 - chr3R 22846911 intergenic not near genes chr3R 22847041 intergenic not near genes chr3R_10_22845001 chr3R_22845001 RAL-377 2799 chr3R 22863911 22863923 chr3R 22864007 22864019 7 96 0.0 4.0 2.0 2.3 108 chr3R 22863911 intergenic not near genes chr3R 22863965 intergenic not near genes chr3R 22864019 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-377 2800 chr3R 22867439 22867453 chr3R 22867568 22867595 4 139 3.0 6.0 4.5 0.7 156 chr3R 22867439 intergenic not near genes chr3R 22867517 intergenic not near genes chr3R 22867595 intergenic not near genes chr3R_4_22865001 chr3R_22865001 RAL-377 2801 chr3R 22880582 22880604 chr3R 22880679 22880695 6 95 3.0 5.0 4.0 1.2 113 chr3R 22880582 intergenic not near genes chr3R 22880638 intergenic not near genes chr3R 22880695 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-377 2802 chr3R 22881185 22881200 chr3R 22884911 22884926 Doc 4 3726 6.5 5.5 6.0 0.6 3741 chr3R 22881185 intergenic not near genes chr3R 22883056 intergenic not near genes chr3R 22884926 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-377 2803 chr3R 22910925 22910947 chr3R 22911325 22911347 4 400 5.0 2.5 3.8 0.8 422 chr3R 22910925 intron klg + chr3R 22911136 intron klg + chr3R 22911347 intron klg + chr3R_4_22910001 chr3R_22910001 RAL-377 2804 chr3R 22971247 22971264 chr3R 22971341 22971378 5 108 5.5 3.0 4.2 1.0 131 chr3R 22971247 intergenic not near genes chr3R 22971312 intergenic not near genes chr3R 22971378 intergenic not near genes chr3R_5_22970001 chr3R_22970001 RAL-377 2805 chr3R 23060255 23060258 chr3R 23060362 23060368 4 108 0.0 1.5 0.8 2.2 113 chr3R 23060255 intron sav - chr3R 23060312 intron sav - chr3R 23060368 intron sav - chr3R_4_23060001 chr3R_23060001 RAL-377 2806 chr3R 23099784 23099821 chr3R 23099883 23099921 5 92 1.5 3.5 2.5 1.4 137 chr3R 23099784 intron,exon CG13830 -,CG6738 + chr3R 23099852 intron,exon CG13830 -,CG6738 + chr3R 23099921 intron,exon CG13830 -,CG6738 + chr3R_5_23095001 chr3R_23095001 RAL-377 2807 chr3R 23225037 23225046 chr3R 23225133 23225142 6 96 9.0 0.0 4.5 1.1 105 chr3R 23225037 intron cnc - chr3R 23225090 intron cnc - chr3R 23225142 intron cnc - chr3R_6_23225001 chr3R_23225001 RAL-377 2808 chr3R 23291247 23291269 chr3R 23291339 23291370 7 100 4.0 4.0 4.0 1.4 123 chr3R 23291247 3` UTR pnt - chr3R 23291308 3` UTR pnt - chr3R 23291370 exon pnt - chr3R_7_23290001 chr3R_23290001 RAL-377 2809 chr3R 23346834 23346872 chr3R 23346932 23346970 4 98 3.5 9.5 6.5 0.5 136 chr3R 23346834 intergenic not near genes chr3R 23346902 intergenic not near genes chr3R 23346970 intergenic not near genes chr3R_4_23345001 chr3R_23345001 RAL-377 2810 chr3R 23356974 23356996 chr3R 23357080 23357097 12 106 7.5 7.5 7.5 1.4 123 chr3R 23356974 intron Sec13 + chr3R 23357036 intron Sec13 + chr3R 23357097 intron Sec13 + chr3R_12_23355001 chr3R_23355001 RAL-377 2811 chr3R 23360176 23360210 chr3R 23360272 23360306 11 96 0.0 6.5 3.2 2.6 130 chr3R 23360176 3` UTR RpS3 + chr3R 23360241 intergenic RpS3 + chr3R 23360306 intergenic RpS3 + chr3R_11_23360001 chr3R_23360001 RAL-377 2812 chr3R 23421963 23422011 chr3R 23422067 23422116 11 99 2.0 2.5 2.2 3.4 153 chr3R 23421963 intron CG4374 - chr3R 23422040 intron CG4374 - chr3R 23422116 intron CG4374 - chr3R_11_23420001 chr3R_23420001 RAL-377 2813 chr3R 23431051 23431092 chr3R 23431147 23431188 9 93 5.5 2.5 4.0 1.8 137 chr3R 23431051 intron CG4374 - chr3R 23431120 intron CG4374 - chr3R 23431188 intron CG4374 - chr3R_9_23430001 chr3R_23430001 RAL-377 2814 chr3R 23453670 23453708 chr3R 23453766 23453778 12 95 3.0 5.0 4.0 2.4 108 chr3R 23453670 intron CG4374 - chr3R 23453724 intron CG4374 - chr3R 23453778 intron CG4374 - chr3R_12_23450001 chr3R_23450001 RAL-377 2815 chr3R 23558379 23558429 chr3R 23560180 23560214 Bari1 15 1800 0.5 3.5 2.0 5.0 1835 chr3R 23558379 intron beat-IV + chr3R 23559296 intron beat-IV + chr3R 23560214 intron beat-IV + chr3R_15_23555001 chr3R_23555001 RAL-377 2816 chr3R 23574406 23574426 chr3R 23574956 23574985 9 558 1.0 3.0 2.0 3.0 579 chr3R 23574406 exon beat-IV + chr3R 23574696 intron beat-IV + chr3R 23574985 intron beat-IV + chr3R_9_23570001 chr3R_23570001 RAL-377 2817 chr3R 23629429 23629440 chr3R 23629525 23629536 4 93 7.0 2.0 4.5 0.7 107 chr3R 23629429 intron CG31145 - chr3R 23629482 intron CG31145 - chr3R 23629536 intron CG31145 - chr3R_4_23625001 chr3R_23625001 RAL-377 2818 chr3R 23629442 23629470 chr3R 23629517 23629559 14 90 2.5 2.0 2.2 4.4 117 chr3R 23629442 intron CG31145 - chr3R 23629500 intron CG31145 - chr3R 23629559 intron CG31145 - chr3R_14_23625001 chr3R_23625001 RAL-377 2819 chr3R 23684674 23684720 chr3R 23685180 23685193 roo 7 499 1.5 3.0 2.2 2.2 519 chr3R 23684674 exon CG18754 + chr3R 23684934 intron CG18754 + chr3R 23685193 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-377 2820 chr3R 23733800 23733828 chr3R 23734027 23734061 15 231 3.5 2.5 3.0 3.8 261 chr3R 23733800 5` UTR Hmgcr + chr3R 23733930 intron Hmgcr + chr3R 23734061 intron Hmgcr + chr3R_15_23730001 chr3R_23730001 RAL-377 2821 chr3R 23738469 23738494 chr3R 23738577 23738594 5 106 3.5 5.0 4.2 1.0 125 chr3R 23738469 intron Hmgcr + chr3R 23738532 intron Hmgcr + chr3R 23738594 intron Hmgcr + chr3R_5_23735001 chr3R_23735001 RAL-377 2822 chr3R 23835399 23835432 chr3R 23844556 23844602 roo 12 9168 6.0 4.0 5.0 2.0 9203 chr3R 23835399 intron CG34355 + chr3R 23840000 intron CG34355 + chr3R 23844602 intron CG34355 + chr3R_12_23835001 chr3R_23835001 RAL-377 2823 chr3R 23851068 23851085 chr3R 23858755 23858772 opus 11 7687 10.5 12.5 11.5 0.9 7704 chr3R 23851068 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858772 intergenic not near genes chr3R_11_23850001 chr3R_23850001 RAL-377 2824 chr3R 23944895 23944929 chr3R 23945000 23945034 11 105 6.0 4.0 5.0 1.8 139 chr3R 23944895 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945034 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-377 2825 chr3R 23949020 23949074 chr3R 23949117 23949171 22 96 2.0 2.5 2.2 6.9 151 chr3R 23949020 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949171 intergenic not near genes chr3R_22_23945001 chr3R_23945001 RAL-377 2826 chr3R 23967549 23967580 chr3R 23967633 23967677 10 92 6.0 3.5 4.8 1.7 128 chr3R 23967549 intron CG31140 + chr3R 23967613 intron CG31140 + chr3R 23967677 intron CG31140 + chr3R_10_23965001 chr3R_23965001 RAL-377 2827 chr3R 24011650 24011679 chr3R 24011753 24011782 9 103 0.0 6.5 3.2 2.1 132 chr3R 24011650 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011782 intron KrT95D - chr3R_9_24010001 chr3R_24010001 RAL-377 2828 chr3R 24072078 24072116 chr3R 24072524 24072558 jockey 8 450 4.0 7.5 5.8 1.2 480 chr3R 24072078 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072558 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-377 2829 chr3R 24076902 24076947 chr3R 24078389 24078434 hobo 14 1484 3.5 8.0 5.8 2.1 1532 chr3R 24076902 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078434 intron 4EHP - chr3R_14_24075001 chr3R_24075001 RAL-377 2830 chr3R 24100450 24100615 chr3R 24100559 24100848 36 207 0.0 0.0 0.0 36.0 398 chr3R 24100450 intron 4EHP - chr3R 24100649 intron 4EHP - chr3R 24100848 intron 4EHP - chr3R_36_24100001 chr3R_24100001 RAL-377 2831 chr3R 24207201 24207245 chr3R 24212297 24212341 flea 15 5095 3.5 7.5 5.5 2.3 5140 chr3R 24207201 intron twin - chr3R 24209771 intron twin - chr3R 24212341 intron twin - chr3R_15_24205001 chr3R_24205001 RAL-377 2832 chr3R 24433468 24433504 chr3R 24433567 24433603 8 99 2.5 7.5 5.0 1.3 135 chr3R 24433468 intron nAChRalpha1 - chr3R 24433536 intron nAChRalpha1 - chr3R 24433603 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-377 2833 chr3R 24466445 24466495 chr3R 24466543 24466593 16 96 5.0 3.5 4.2 3.1 148 chr3R 24466445 intergenic not near genes chr3R 24466519 intergenic not near genes chr3R 24466593 intergenic not near genes chr3R_16_24465001 chr3R_24465001 RAL-377 2834 chr3R 24493049 24493088 chr3R 24493155 24493194 8 105 4.0 7.5 5.8 1.2 145 chr3R 24493049 intergenic not near genes chr3R 24493122 intergenic not near genes chr3R 24493194 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-377 2835 chr3R 24493260 24493306 chr3R 24493509 24493555 BS 15 248 6.0 5.0 5.5 2.3 295 chr3R 24493260 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493555 intergenic not near genes chr3R_15_24490001 chr3R_24490001 RAL-377 2836 chr3R 24527782 24527835 chr3R 24527893 24527946 19 111 2.5 1.5 2.0 6.3 164 chr3R 24527782 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527946 intergenic CG6607 +,CG13618 + chr3R_19_24525001 chr3R_24525001 RAL-377 2837 chr3R 24594657 24594668 chr3R 24594917 24594928 pogo 4 260 3.5 2.5 3.0 1.0 271 chr3R 24594657 intron mld + chr3R 24594792 intron mld + chr3R 24594928 intron mld + chr3R_4_24590001 chr3R_24590001 RAL-377 2838 chr3R 24603696 24603717 chr3R 24603792 24603813 4 96 0.5 4.0 2.2 1.2 117 chr3R 24603696 intron mld + chr3R 24603754 intron mld + chr3R 24603813 intron mld + chr3R_4_24600001 chr3R_24600001 RAL-377 2839 chr3R 24605532 24605550 chr3R 24605652 24605674 7 118 6.5 8.5 7.5 0.8 142 chr3R 24605532 intron mld + chr3R 24605603 intron mld + chr3R 24605674 intron mld + chr3R_7_24605001 chr3R_24605001 RAL-377 2840 chr3R 24667585 24667622 chr3R 24667682 24667719 8 96 3.0 0.0 1.5 3.2 134 chr3R 24667585 intron slo + chr3R 24667652 intron slo + chr3R 24667719 intron slo + chr3R_8_24665001 chr3R_24665001 RAL-377 2841 chr3R 24670140 24670195 chr3R 24670244 24670293 15 103 1.5 4.5 3.0 3.8 153 chr3R 24670140 intron slo + chr3R 24670216 intron slo + chr3R 24670293 intron slo + chr3R_15_24670001 chr3R_24670001 RAL-377 2842 chr3R 24691286 24691319 chr3R 24691406 24691439 21 119 5.0 6.0 5.5 3.2 153 chr3R 24691286 intron slo + chr3R 24691362 intron slo + chr3R 24691439 intron slo + chr3R_21_24690001 chr3R_24690001 RAL-377 2843 chr3R 24730076 24730101 chr3R 24732473 24732498 Doc 4 2398 2.5 0.0 1.2 1.8 2422 chr3R 24730076 intron tok + chr3R 24731287 intron tok + chr3R 24732498 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-377 2844 chr3R 24785061 24785112 chr3R 24785157 24785195 17 93 6.5 7.0 6.8 2.2 134 chr3R 24785061 3` UTR CG5805 - chr3R 24785128 3` UTR CG5805 - chr3R 24785195 3` UTR CG5805 - chr3R_17_24785001 chr3R_24785001 RAL-377 2845 chr3R 24854869 24854913 chr3R 24854971 24855015 12 102 2.0 2.5 2.2 3.8 146 chr3R 24854869 3` UTR,3` UTR nct +,HdacX - chr3R 24854942 3` UTR HdacX - chr3R 24855015 3` UTR HdacX - chr3R_12_24850001 chr3R_24850001 RAL-377 2846 chr3R 24893445 24893477 chr3R 24893545 24893577 5 100 6.0 3.5 4.8 0.9 132 chr3R 24893445 intron CG31121 - chr3R 24893511 intron CG31121 - chr3R 24893577 intron CG31121 - chr3R_5_24890001 chr3R_24890001 RAL-377 2847 chr3R 24927119 24927145 chr3R 24931919 24931954 Doc 11 4810 6.5 4.0 5.2 1.8 4835 chr3R 24927119 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-377 2848 chr3R 25004895 25004918 chr3R 25004993 25005021 5 102 0.0 1.5 0.8 2.8 126 chr3R 25004895 intron tnc + chr3R 25004958 intron tnc + chr3R 25005021 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-377 2849 chr3R 25051778 25051799 chr3R 25051869 25051888 4 94 5.0 14.5 9.8 0.4 110 chr3R 25051778 intron CG11791 + chr3R 25051833 intron CG11791 + chr3R 25051888 intron CG11791 + chr3R_4_25050001 chr3R_25050001 RAL-377 2850 chr3R 25368459 25368487 chr3R 25368594 25368625 10 137 4.5 0.0 2.2 3.1 166 chr3R 25368459 intron Fur1 - chr3R 25368542 intron Fur1 - chr3R 25368625 intron Fur1 - chr3R_10_25365001 chr3R_25365001 RAL-377 2851 chr3R 25422053 25422068 chr3R 25422148 25422169 5 100 9.5 0.0 4.8 0.9 116 chr3R 25422053 intron Fur1 - chr3R 25422111 intron Fur1 - chr3R 25422169 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-377 2852 chr3R 25431412 25431447 chr3R 25431518 25431553 10 106 3.0 1.0 2.0 3.3 141 chr3R 25431412 intron Fur1 - chr3R 25431482 intron Fur1 - chr3R 25431553 intron Fur1 - chr3R_10_25430001 chr3R_25430001 RAL-377 2853 chr3R 25514420 25514451 chr3R 25514521 25514552 14 101 0.0 4.5 2.2 4.4 132 chr3R 25514420 intergenic not near genes chr3R 25514486 intergenic not near genes chr3R 25514552 intergenic not near genes chr3R_14_25510001 chr3R_25510001 RAL-377 2854 chr3R 25520970 25520983 chr3R 25521089 25521102 4 118 8.0 5.5 6.8 0.5 132 chr3R 25520970 intron msi + chr3R 25521036 intron msi + chr3R 25521102 intron msi + chr3R_4_25520001 chr3R_25520001 RAL-377 2855 chr3R 7773344 7773344 chr3R 25538123 25538124 6 17764780 21.0 7.5 14.2 0.4 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_6_16655001 chr3R_16655001 RAL-377 2856 chr3R 25612817 25612861 chr3R 25612939 25612988 11 116 0.0 2.5 1.2 5.0 171 chr3R 25612817 intron Npl4 - chr3R 25612902 intron Npl4 - chr3R 25612988 intron Npl4 - chr3R_11_25610001 chr3R_25610001 RAL-377 2857 chr3R 25642571 25642622 chr3R 25642682 25642733 18 109 4.5 5.0 4.8 3.1 162 chr3R 25642571 intron jigr1 + chr3R 25642652 intron jigr1 + chr3R 25642733 intron jigr1 + chr3R_18_25640001 chr3R_25640001 RAL-377 2858 chr3R 25721833 25721874 chr3R 25721932 25721972 4 98 4.0 4.5 4.2 0.8 139 chr3R 25721833 intron LpR2 - chr3R 25721902 intron LpR2 - chr3R 25721972 intron LpR2 - chr3R_4_25720001 chr3R_25720001 RAL-377 2859 chr3R 25725813 25725859 chr3R 25734988 25735039 roo 12 9180 6.0 3.5 4.8 2.1 9226 chr3R 25725813 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735039 intron LpR2 - chr3R_12_25730001 chr3R_25730001 RAL-377 2860 chr3R 25743954 25743995 chr3R 25744155 25744196 12 201 2.0 3.5 2.8 3.2 242 chr3R 25743954 intron LpR1 - chr3R 25744075 intron LpR1 - chr3R 25744196 intron LpR1 - chr3R_12_25740001 chr3R_25740001 RAL-377 2861 chr3R 25796365 25796404 chr3R 25796459 25796472 4 89 3.5 0.0 1.8 1.4 107 chr3R 25796365 intergenic CR43847 - chr3R 25796418 intergenic CR43847 - chr3R 25796472 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-377 2862 chr3R 25808096 25808099 chr3R 25808223 25808257 6 135 23.0 26.0 24.5 0.2 161 chr3R 25808096 5` UTR CR45652 + chr3R 25808176 5` UTR CR45652 + chr3R 25808257 5` UTR CR45652 + chr3R_6_25805001 chr3R_25805001 RAL-377 2863 chr3R 25832675 25832724 chr3R 25841877 25841926 roo 9 9199 3.0 6.0 4.5 1.6 9251 chr3R 25832675 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841926 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-377 2864 chr3R 25843617 25843625 chr3R 25843767 25843775 5 150 5.5 4.0 4.8 0.9 158 chr3R 25843617 intergenic CR45653 + chr3R 25843696 intergenic CR45653 + chr3R 25843775 intergenic CR45653 + chr3R_5_25840001 chr3R_25840001 RAL-377 2865 chr3R 25843629 25843665 chr3R 25843765 25843815 17 149 2.0 4.0 3.0 4.2 186 chr3R 25843629 intergenic CR45653 + chr3R 25843722 intergenic CR45653 + chr3R 25843815 intergenic CR45653 + chr3R_17_25840001 chr3R_25840001 RAL-377 2866 chr3R 25861808 25861850 chr3R 25861905 25861942 19 96 4.0 5.5 4.8 3.3 134 chr3R 25861808 intron CG5890 + chr3R 25861875 intron CG5890 + chr3R 25861942 intron CG5890 + chr3R_19_25860001 chr3R_25860001 RAL-377 2867 chr3R 25884437 25884489 chr3R 25887395 25887447 17 2957 20.0 18.5 19.2 0.8 3010 chr3R 25884437 intron SppL + chr3R 25885942 exon SppL + chr3R 25887447 3` UTR SppL + chr3R_17_25885001 chr3R_25885001 RAL-377 2868 chr3R 25884421 25884470 chr3R 25887927 25887976 15 3509 20.0 47.0 33.5 0.4 3555 chr3R 25884421 intron SppL + chr3R 25886198 intron SppL + chr3R 25887976 3` UTR SppL + chr3R_15_25885001 chr3R_25885001 RAL-377 2869 chr3R 25920843 25920875 chr3R 25920938 25920971 5 99 5.5 1.5 3.5 1.1 128 chr3R 25920843 exon CG42235 + chr3R 25920907 3` UTR CG42235 + chr3R 25920971 3` UTR CG42235 + chr3R_5_25920001 chr3R_25920001 RAL-377 2870 chr3R 25927498 25927530 chr3R 25927600 25927632 12 101 6.0 0.5 3.2 2.9 134 chr3R 25927498 intron CCAP-R - chr3R 25927565 intron CCAP-R - chr3R 25927632 intron CCAP-R - chr3R_12_25925001 chr3R_25925001 RAL-377 2871 chr3R 25997234 25997267 chr3R 25997340 25997374 8 107 5.0 2.5 3.8 1.7 140 chr3R 25997234 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997304 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997374 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_8_25995001 chr3R_25995001 RAL-377 2872 chr3R 26093828 26093850 chr3R 26093926 26093948 5 96 2.5 2.5 2.5 1.4 120 chr3R 26093828 intron dys - chr3R 26093888 intron dys - chr3R 26093948 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-377 2873 chr3R 26122459 26122480 chr3R 26122555 26122576 5 95 5.5 7.0 6.2 0.7 117 chr3R 26122459 intron CG31324 + chr3R 26122518 intron CG31324 + chr3R 26122576 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-377 2874 chr3R 26126248 26126289 chr3R 26126373 26126414 15 124 2.0 6.0 4.0 3.0 166 chr3R 26126248 intron CG31324 + chr3R 26126331 intron CG31324 + chr3R 26126414 intron CG31324 + chr3R_15_26125001 chr3R_26125001 RAL-377 2875 chr3R 26166157 26166201 chr3R 26166263 26166307 20 105 8.5 5.5 7.0 2.5 150 chr3R 26166157 intergenic not near genes chr3R 26166232 intergenic not near genes chr3R 26166307 intergenic not near genes chr3R_20_26165001 chr3R_26165001 RAL-377 2876 chr3R 26215771 26215795 chr3R 26221745 26221759 297 4 5972 3.0 3.5 3.2 1.0 5988 chr3R 26215771 intergenic not near genes chr3R 26218765 intergenic not near genes chr3R 26221759 intergenic not near genes chr3R_4_26215001 chr3R_26215001 RAL-377 2877 chr3R 26235480 26235522 chr3R 26235572 26235624 10 86 1.5 2.5 2.0 3.3 144 chr3R 26235480 5` UTR CR42745 + chr3R 26235552 5` UTR CR42745 + chr3R 26235624 intron CR42745 + chr3R_10_26235001 chr3R_26235001 RAL-377 2878 chr3R 26239438 26239486 chr3R 26243379 26243427 20 3944 29.0 33.5 31.2 0.6 3989 chr3R 26239438 intron CR42745 + chr3R 26241432 intron CR42745 + chr3R 26243427 intron CR42745 + chr3R_20_26240001 chr3R_26240001 RAL-377 2879 chr3R 26292088 26292135 chr3R 26292188 26292235 20 97 4.5 3.5 4.0 4.0 147 chr3R 26292088 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292235 intergenic not near genes chr3R_20_26290001 chr3R_26290001 RAL-377 2880 chr3R 26301811 26301855 chr3R 26301912 26301956 16 100 5.5 4.0 4.8 2.8 145 chr3R 26301811 intergenic not near genes chr3R 26301884 intergenic not near genes chr3R 26301956 intergenic not near genes chr3R_16_26300001 chr3R_26300001 RAL-377 2881 chr3R 26302105 26302145 chr3R 26302321 26302371 8 223 5.5 4.0 4.8 1.4 266 chr3R 26302105 intergenic not near genes chr3R 26302238 intergenic not near genes chr3R 26302371 intergenic not near genes chr3R_8_26300001 chr3R_26300001 RAL-377 2882 chr3R 26365100 26365138 chr3R 26365205 26365240 6 104 3.5 4.0 3.8 1.2 140 chr3R 26365100 intergenic not near genes chr3R 26365170 intergenic not near genes chr3R 26365240 intergenic not near genes chr3R_6_26365001 chr3R_26365001 RAL-377 2883 chr3R 26370321 26370349 chr3R 26370426 26370453 12 105 0.0 5.5 2.8 3.2 132 chr3R 26370321 intergenic not near genes chr3R 26370387 intergenic not near genes chr3R 26370453 intergenic not near genes chr3R_12_26370001 chr3R_26370001 RAL-377 2884 chr3R 26376307 26376356 chr3R 26385486 26385527 roo 7 9175 5.5 0.0 2.8 1.8 9220 chr3R 26376307 intergenic not near genes chr3R 26380917 intergenic not near genes chr3R 26385527 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-377 2885 chr3R 26387299 26387347 chr3R 26387396 26387434 8 91 2.5 5.0 3.8 1.7 135 chr3R 26387299 intergenic not near genes chr3R 26387366 intergenic not near genes chr3R 26387434 intergenic not near genes chr3R_8_26385001 chr3R_26385001 RAL-377 2886 chr3R 26502940 26502990 chr3R 26503284 26503334 15 342 4.0 6.0 5.0 2.5 394 chr3R 26502940 intron plum - chr3R 26503137 intron plum - chr3R 26503334 intron plum - chr3R_15_26500001 chr3R_26500001 RAL-377 2887 chr3R 26510482 26510531 chr3R 26519563 26519612 roo 12 9081 4.0 4.0 4.0 2.4 9130 chr3R 26510482 intron plum - chr3R 26515047 intron plum - chr3R 26519612 intron,5` UTR plum -,CR45226 + chr3R_12_26515001 chr3R_26515001 RAL-377 2888 chr3R 26540986 26541032 chr3R 26541086 26541131 10 99 1.0 6.5 3.8 2.1 145 chr3R 26540986 intron scrib + chr3R 26541058 intron scrib + chr3R 26541131 intron scrib + chr3R_10_26540001 chr3R_26540001 RAL-377 2889 chr3R 26542036 26542065 chr3R 26542147 26542166 5 108 3.5 2.0 2.8 1.3 130 chr3R 26542036 intron scrib + chr3R 26542101 intron scrib + chr3R 26542166 intron scrib + chr3R_5_26540001 chr3R_26540001 RAL-377 2890 chr3R 26558314 26558352 chr3R 26565647 26565684 Stalker4 6 7328 3.5 4.5 4.0 1.2 7370 chr3R 26558314 intron scrib + chr3R 26561999 intron scrib + chr3R 26565684 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-377 2891 chr3R 26642718 26642737 chr3R 26643131 26643140 jockey 5 411 7.5 8.0 7.8 0.6 422 chr3R 26642718 intergenic not near genes chr3R 26642929 intergenic not near genes chr3R 26643140 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-377 2892 chr3R 26642741 26642758 chr3R 26643126 26643161 jockey 10 409 5.0 6.5 5.8 1.5 420 chr3R 26642741 intergenic not near genes chr3R 26642951 intergenic not near genes chr3R 26643161 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-377 2893 chr3R 26659923 26659969 chr3R 26660044 26660090 12 120 5.5 0.5 3.0 3.0 167 chr3R 26659923 intron beat-VII - chr3R 26660006 intron beat-VII - chr3R 26660090 intron beat-VII - chr3R_12_26660001 chr3R_26660001 RAL-377 2894 chr3R 26770220 26770270 chr3R 26770317 26770366 13 97 4.0 6.0 5.0 2.2 146 chr3R 26770220 intergenic CR45563 + chr3R 26770293 intergenic CR45563 + chr3R 26770366 intergenic not near genes chr3R_13_26770001 chr3R_26770001 RAL-377 2895 chr3R 26810535 26810580 chr3R 26811040 26811085 roo 9 504 8.0 5.0 6.5 1.2 550 chr3R 26810535 intron Tl + chr3R 26810810 intron Tl + chr3R 26811085 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-377 2896 chr3R 26845553 26845566 chr3R 26845652 26845666 6 99 7.5 2.5 5.0 1.0 113 chr3R 26845553 intron Lerp - chr3R 26845610 intron Lerp - chr3R 26845666 intron Lerp - chr3R_6_26845001 chr3R_26845001 RAL-377 2897 chr3R 26845570 26845598 chr3R 26845650 26845687 9 93 4.5 2.0 3.2 2.1 117 chr3R 26845570 intron Lerp - chr3R 26845628 intron Lerp - chr3R 26845687 intron Lerp - chr3R_9_26845001 chr3R_26845001 RAL-377 2898 chr3R 26870399 26870440 chr3R 26870774 26870815 11 375 5.0 15.5 10.2 1.0 416 chr3R 26870399 intron BM-40-SPARC - chr3R 26870607 intron BM-40-SPARC - chr3R 26870815 intron BM-40-SPARC - chr3R_11_26870001 chr3R_26870001 RAL-377 2899 chr3R 26870529 26870583 chr3R 26870839 26870888 5 312 12.5 28.5 20.5 0.2 359 chr3R 26870529 intron BM-40-SPARC - chr3R 26870708 intron BM-40-SPARC - chr3R 26870888 intron BM-40-SPARC - chr3R_5_26870001 chr3R_26870001 RAL-377 2900 chr3R 26920356 26920409 chr3R 26920522 26920575 25 163 8.0 5.5 6.8 3.2 219 chr3R 26920356 intron sda + chr3R 26920466 intron sda + chr3R 26920575 intron sda + chr3R_25_26920001 chr3R_26920001 RAL-377 2901 chr3R 26945379 26945434 chr3R 26945479 26945534 13 100 3.5 3.5 3.5 2.9 155 chr3R 26945379 intergenic sda +,CG14252 + chr3R 26945456 intergenic CG14252 +,sda + chr3R 26945534 5` UTR CG14252 + chr3R_13_26945001 chr3R_26945001 RAL-377 2902 chr3R 26960718 26960765 chr3R 26960827 26960863 6 101 2.5 6.5 4.5 1.1 145 chr3R 26960718 intergenic Tsp97E - chr3R 26960790 intergenic Tsp97E - chr3R 26960863 intergenic Tsp97E - chr3R_6_26960001 chr3R_26960001 RAL-377 2903 chr3R 27007387 27007435 chr3R 27016542 27016590 roo 15 9155 4.0 4.0 4.0 3.0 9203 chr3R 27007387 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016590 intron RYa-R + chr3R_15_27010001 chr3R_27010001 RAL-377 2904 chr3R 27027668 27027705 chr3R 27027772 27027807 6 103 6.0 4.0 5.0 1.0 139 chr3R 27027668 intron RYa-R + chr3R 27027738 intron RYa-R + chr3R 27027807 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-377 2905 chr3R 27028712 27028749 chr3R 27028811 27028848 12 99 3.5 3.0 3.2 2.9 136 chr3R 27028712 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028848 intron RYa-R + chr3R_12_27025001 chr3R_27025001 RAL-377 2906 chr3R 27133504 27133545 chr3R 27133639 27133682 17 137 4.5 4.5 4.5 3.1 178 chr3R 27133504 intron CG6051 - chr3R 27133593 intron CG6051 - chr3R 27133682 intron CG6051 - chr3R_17_27130001 chr3R_27130001 RAL-377 2907 chr3R 27140498 27140548 chr3R 27148123 27148176 412 17 7629 6.5 5.5 6.0 2.4 7678 chr3R 27140498 intron CG6051 - chr3R 27144337 intron CG6051 - chr3R 27148176 intron CG6051 - chr3R_17_27140001 chr3R_27140001 RAL-377 2908 chr3R 27300850 27300877 chr3R 27300955 27300989 9 108 1.5 6.0 3.8 1.9 139 chr3R 27300850 intron CG3339 - chr3R 27300920 intron CG3339 - chr3R 27300989 intron CG3339 - chr3R_9_27300001 chr3R_27300001 RAL-377 2909 chr3R 27329476 27329499 chr3R 27329550 27329596 8 94 2.5 2.5 2.5 2.3 120 chr3R 27329476 intergenic CG3330 - chr3R 27329536 intergenic CG3330 - chr3R 27329596 intergenic CG3330 - chr3R_8_27325001 chr3R_27325001 RAL-377 2910 chr3R 27342776 27342826 chr3R 27351377 27351427 Tirant 13 8601 4.5 3.0 3.8 2.7 8651 chr3R 27342776 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351427 intron CG42534 + chr3R_13_27345001 chr3R_27345001 RAL-377 2911 chr3R 27377453 27377481 chr3R 27377561 27377589 4 108 5.5 2.5 4.0 0.8 136 chr3R 27377453 3` UTR side - chr3R 27377521 3` UTR side - chr3R 27377589 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-377 2912 chr3R 27506281 27506318 chr3R 27506383 27506420 5 102 0.0 3.5 1.8 1.8 139 chr3R 27506281 intergenic not near genes chr3R 27506350 intergenic not near genes chr3R 27506420 intergenic not near genes chr3R_5_27505001 chr3R_27505001 RAL-377 2913 chr3R 27515402 27515438 chr3R 27515501 27515537 8 95 3.0 1.0 2.0 2.7 135 chr3R 27515402 intergenic not near genes chr3R 27515470 intergenic CG13972 - chr3R 27515537 intergenic CG13972 - chr3R_8_27515001 chr3R_27515001 RAL-377 2914 chr3R 27521142 27521184 chr3R 27530371 27530413 roo 20 9229 6.0 5.5 5.8 2.9 9271 chr3R 27521142 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530413 intron CG12885 + chr3R_20_27525001 chr3R_27525001 RAL-377 2915 chr3R 27608794 27608843 chr3R 27608898 27608947 15 100 4.5 4.0 4.2 2.9 153 chr3R 27608794 intron Tusp + chr3R 27608870 intron Tusp + chr3R 27608947 intron Tusp + chr3R_15_27605001 chr3R_27605001 RAL-377 2916 chr3R 27622211 27622252 chr3R 27622306 27622348 9 94 4.0 1.5 2.8 2.4 137 chr3R 27622211 intron Tusp + chr3R 27622280 intron Tusp + chr3R 27622348 intron Tusp + chr3R_9_27620001 chr3R_27620001 RAL-377 2917 chr3R 27636063 27636086 chr3R 27636159 27636182 14 96 7.0 3.0 5.0 2.3 119 chr3R 27636063 intergenic CG5611 -,Mtl + chr3R 27636122 intergenic CG5611 -,Mtl + chr3R 27636182 intergenic CG5611 -,Mtl + chr3R_14_27635001 chr3R_27635001 RAL-377 2918 chr3R 27636127 27636128 chr3R 28507584 28507585 I-element 4 871457 2.0 5.0 3.5 0.9 871458 chr3R 27636127 intergenic CG5611 -,Mtl + chr3R 28071856 intron CG34362 + chr3R 28507585 intron Dhc98D + chr3R_4_28070001 chr3R_28070001 RAL-377 2919 chr3R 27705358 27705390 chr3R 27705437 27705481 8 87 3.0 2.5 2.8 2.1 123 chr3R 27705358 exon CG12428 - chr3R 27705420 intron CG12428 - chr3R 27705481 exon CG12428 - chr3R_8_27705001 chr3R_27705001 RAL-377 2920 chr3R 27718556 27718598 chr3R 27718655 27718697 9 97 4.0 1.0 2.5 2.6 141 chr3R 27718556 intergenic not near genes chr3R 27718626 intergenic not near genes chr3R 27718697 intergenic not near genes chr3R_9_27715001 chr3R_27715001 RAL-377 2921 chr3R 27725581 27725598 chr3R 27731044 27731061 I-element 7 5463 0.0 11.5 5.8 1.0 5480 chr3R 27725581 intergenic not near genes chr3R 27728321 intergenic not near genes chr3R 27731061 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-377 2922 chr3R 27735216 27735225 chr3R 27735798 27735803 6 581 11.5 6.5 9.0 0.6 587 chr3R 27735216 intergenic not near genes chr3R 27735510 intergenic not near genes chr3R 27735803 intergenic not near genes chr3R_6_27735001 chr3R_27735001 RAL-377 2923 chr3R 27735228 27735260 chr3R 27735795 27735842 13 579 5.5 6.0 5.8 1.9 614 chr3R 27735228 intergenic not near genes chr3R 27735535 intergenic not near genes chr3R 27735842 intergenic not near genes chr3R_13_27735001 chr3R_27735001 RAL-377 2924 chr3R 27799916 27799960 chr3R 27800018 27800062 10 102 3.0 4.0 3.5 2.2 146 chr3R 27799916 intron CG34353 - chr3R 27799989 intron CG34353 - chr3R 27800062 intron CG34353 - chr3R_10_27795001 chr3R_27795001 RAL-377 2925 chr3R 27856742 27856789 chr3R 27858244 27858292 hopper2 16 1501 4.5 2.0 3.2 3.8 1550 chr3R 27856742 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858292 intron CG34353 - chr3R_16_27855001 chr3R_27855001 RAL-377 2926 chr3R 27862933 27862985 chr3R 27868258 27868310 Transpac 11 5320 2.0 4.0 3.0 2.8 5377 chr3R 27862933 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868310 intron CG34353 - chr3R_11_27865001 chr3R_27865001 RAL-377 2927 chr3R 27869719 27869767 chr3R 27869834 27869885 6 115 1.5 1.5 1.5 2.4 166 chr3R 27869719 intron CG34353 - chr3R 27869802 intron CG34353 - chr3R 27869885 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-377 2928 chr3R 27875690 27875729 chr3R 27882761 27882804 297 20 7075 3.0 5.5 4.2 3.8 7114 chr3R 27875690 intron CG34353 - chr3R 27879247 intron CG34353 - chr3R 27882804 intron CG34353 - chr3R_20_27875001 chr3R_27875001 RAL-377 2929 chr3R 28068474 28068527 chr3R 28073936 28073986 I-element 18 5461 0.0 2.5 1.2 8.2 5512 chr3R 28068474 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073986 intron CG34362 + chr3R_18_28070001 chr3R_28070001 RAL-377 2930 chr3R 28131412 28131459 chr3R 28131614 28131661 10 201 2.5 1.5 2.0 3.3 249 chr3R 28131412 intergenic not near genes chr3R 28131536 intergenic not near genes chr3R 28131661 intergenic not near genes chr3R_10_28130001 chr3R_28130001 RAL-377 2931 chr3R 28152333 28152363 chr3R 28152430 28152460 10 95 4.0 3.5 3.8 2.1 127 chr3R 28152333 intron CG34354 + chr3R 28152396 intron CG34354 + chr3R 28152460 intron CG34354 + chr3R_10_28150001 chr3R_28150001 RAL-377 2932 chr3R 28172953 28172963 chr3R 28173129 28173140 4 177 6.0 2.5 4.2 0.8 187 chr3R 28172953 intron CG34354 + chr3R 28173046 intron CG34354 + chr3R 28173140 intron CG34354 + chr3R_4_28170001 chr3R_28170001 RAL-377 2933 chr3R 28173651 28173704 chr3R 28181101 28181154 mdg1 13 7450 0.5 5.5 3.0 3.2 7503 chr3R 28173651 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181154 intron CG34354 + chr3R_13_28175001 chr3R_28175001 RAL-377 2934 chr3R 28223244 28223269 chr3R 28223350 28223375 7 106 6.5 4.5 5.5 1.1 131 chr3R 28223244 intron CG34354 + chr3R 28223310 intron CG34354 + chr3R 28223375 intron CG34354 + chr3R_7_28220001 chr3R_28220001 RAL-377 2935 chr3R 28234491 28234535 chr3R 28234595 28234598 4 86 4.5 0.0 2.2 1.2 107 chr3R 28234491 intron CG34354 + chr3R 28234544 intron CG34354 + chr3R 28234598 intron CG34354 + chr3R_4_28230001 chr3R_28230001 RAL-377 2936 chr3R 28253334 28253362 chr3R 28255847 28255892 jockey 9 2525 2.0 2.5 2.2 2.8 2558 chr3R 28253334 intergenic not near genes chr3R 28254613 intergenic not near genes chr3R 28255892 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-377 2937 chr3R 28302089 28302126 chr3R 28302548 28302585 jockey 14 459 10.0 8.0 9.0 1.4 496 chr3R 28302089 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302585 intergenic not near genes chr3R_14_28300001 chr3R_28300001 RAL-377 2938 chr3R 28345627 28345673 chr3R 28345723 28345769 8 95 4.0 2.5 3.2 1.9 142 chr3R 28345627 intergenic Moca-cyp + chr3R 28345698 intergenic not near genes chr3R 28345769 intergenic not near genes chr3R_8_28345001 chr3R_28345001 RAL-377 2939 chr3R 28352491 28352545 chr3R 28352851 28352904 24 358 2.5 4.0 3.2 5.7 413 chr3R 28352491 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352904 exon Or98b + chr3R_24_28350001 chr3R_28350001 RAL-377 2940 chr3R 28363236 28363287 chr3R 28363344 28363376 10 97 1.0 2.0 1.5 4.0 140 chr3R 28363236 intergenic not near genes chr3R 28363306 intergenic not near genes chr3R 28363376 intergenic not near genes chr3R_10_28360001 chr3R_28360001 RAL-377 2941 chr3R 28416114 28416123 chr3R 28416240 28416252 4 131 7.5 3.0 5.2 0.6 138 chr3R 28416114 intergenic not near genes chr3R 28416183 intergenic not near genes chr3R 28416252 intergenic not near genes chr3R_4_28415001 chr3R_28415001 RAL-377 2942 chr3R 28442161 28442187 chr3R 28442249 28442268 4 95 1.5 6.0 3.8 0.8 107 chr3R 28442161 intron beat-VI + chr3R 28442214 intron beat-VI + chr3R 28442268 intron beat-VI + chr3R_4_28440001 chr3R_28440001 RAL-377 2943 chr3R 28479127 28479164 chr3R 28479244 28479282 19 116 4.0 1.5 2.8 5.0 155 chr3R 28479127 intergenic not near genes chr3R 28479204 intergenic not near genes chr3R 28479282 intergenic not near genes chr3R_19_28475001 chr3R_28475001 RAL-377 2944 chr3R 28480315 28480356 chr3R 28480416 28480456 7 101 0.5 6.0 3.2 1.7 141 chr3R 28480315 intergenic not near genes chr3R 28480386 intergenic not near genes chr3R 28480456 intergenic not near genes chr3R_7_28480001 chr3R_28480001 RAL-377 2945 chr3R 28656758 28656798 chr3R 28657666 28657712 10 906 3.0 2.0 2.5 2.9 954 chr3R 28656758 intergenic not near genes chr3R 28657235 intergenic not near genes chr3R 28657712 intergenic not near genes chr3R_10_28655001 chr3R_28655001 RAL-377 2946 chr3R 28758266 28758282 chr3R 28763903 28763919 roo 7 5637 10.0 0.0 5.0 1.2 5653 chr3R 28758266 intergenic aqrs - chr3R 28761092 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-377 2947 chr3R 28758305 28758319 chr3R 28771332 28771346 Stalker4 5 13027 3.0 3.5 3.2 1.2 13041 chr3R 28758305 intergenic aqrs - chr3R 28764826 intergenic not near genes chr3R 28771346 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-377 2948 chr3R 28763902 28763914 chr3R 28771359 28771377 Stalker4 5 7462 0.0 7.5 3.8 1.0 7475 chr3R 28763902 intergenic not near genes chr3R 28767640 intergenic not near genes chr3R 28771377 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-377 2949 chr3R 28805655 28805699 chr3R 28805753 28805791 10 95 2.0 7.0 4.5 1.8 136 chr3R 28805655 intergenic not near genes chr3R 28805723 intergenic not near genes chr3R 28805791 intergenic not near genes chr3R_10_28805001 chr3R_28805001 RAL-377 2950 chr3R 28830868 28830920 chr3R 28830966 28831018 12 98 2.5 5.5 4.0 2.4 150 chr3R 28830868 intron WASp - chr3R 28830943 intron WASp - chr3R 28831018 intron WASp - chr3R_12_28830001 chr3R_28830001 RAL-377 2951 chr3R 21907534 21907536 chr3R 28831801 28831802 68 6924266 21.0 13.5 17.2 3.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-377 2952 chr3R 28882896 28882938 chr3R 28883033 28883073 7 135 2.5 0.5 1.5 2.8 177 chr3R 28882896 intron,exon CG33203 -,CG14527 + chr3R 28882984 intron CG33203 - chr3R 28883073 intron CG33203 - chr3R_7_28880001 chr3R_28880001 RAL-377 2953 chr3R 29032729 29032778 chr3R 29032821 29032875 12 96 3.0 3.0 3.0 3.0 146 chr3R 29032729 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032802 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032875 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_12_29030001 chr3R_29030001 RAL-377 2954 chr3R 29034079 29034095 chr3R 29034494 29034510 6 414 0.5 10.0 5.2 1.0 431 chr3R 29034079 5` UTR CR45044 + chr3R 29034294 intergenic CR45044 +,Cpsf100 +,beta4GalNAcTB - chr3R 29034510 intergenic Cpsf100 +,CR45044 + chr3R_6_29030001 chr3R_29030001 RAL-377 2955 chr3R 29053716 29053769 chr3R 29054246 29054331 10 532 1.0 0.0 0.5 6.7 615 chr3R 29053716 exon CG11842 + chr3R 29054024 intergenic CG11842 +,CG11843 + chr3R 29054331 intergenic CG11843 +,CG11842 + chr3R_10_29050001 chr3R_29050001 RAL-377 2956 chr3R 29054246 29054270 chr3R 29054351 29054375 6 105 0.0 7.5 3.8 1.2 129 chr3R 29054246 intergenic CG11843 +,CG11842 + chr3R 29054310 intergenic CG11843 +,CG11842 + chr3R 29054375 5` UTR CG11843 + chr3R_6_29050001 chr3R_29050001 RAL-377 2957 chr3R 29079379 29079387 chr3R 29080771 29080779 NOF 4 1392 5.0 0.5 2.8 1.1 1400 chr3R 29079379 intron CG11873 + chr3R 29080079 intron CG11873 + chr3R 29080779 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-377 2958 chr3R 29128452 29128499 chr3R 29128576 29128623 19 123 3.5 4.0 3.8 4.0 171 chr3R 29128452 intergenic dgt6 -,CG11880 + chr3R 29128538 intergenic dgt6 -,CG11880 + chr3R 29128623 3` UTR dgt6 - chr3R_19_29125001 chr3R_29125001 RAL-377 2959 chr3R 29203828 29203848 chr3R 29203928 29203948 11 99 9.0 0.0 4.5 2.0 120 chr3R 29203828 5` UTR CG14508 - chr3R 29203888 intron CG14508 - chr3R 29203948 intron CG14508 - chr3R_11_29200001 chr3R_29200001 RAL-377 2960 chr3R 29213042 29213092 chr3R 29213145 29213195 13 102 5.5 5.0 5.2 2.1 153 chr3R 29213042 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213195 intergenic not near genes chr3R_13_29210001 chr3R_29210001 RAL-377 2961 chr3R 29237522 29237536 chr3R 29239410 29239427 6 1889 22.0 9.5 15.8 0.4 1905 chr3R 29237522 exon CG11951 - chr3R 29238474 intron CG11951 - chr3R 29239427 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-377 2962 chr3R 29240294 29240319 chr3R 29240398 29240423 12 104 10.5 0.0 5.2 1.9 129 chr3R 29240294 intron CG31427 - chr3R 29240358 5` UTR CG31427 - chr3R 29240423 intergenic CG31427 -,CG31445 - chr3R_12_29240001 chr3R_29240001 RAL-377 2963 chr3R 29319808 29319853 chr3R 29320147 29320187 jockey 20 338 7.5 5.5 6.5 2.7 379 chr3R 29319808 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320187 intergenic not near genes chr3R_20_29315001 chr3R_29315001 RAL-377 2964 chr3R 29355939 29355988 chr3R 29356038 29356088 10 99 3.5 6.0 4.8 1.7 149 chr3R 29355939 intergenic CR45547 - chr3R 29356014 intergenic CR45547 - chr3R 29356088 intergenic CR45547 - chr3R_10_29355001 chr3R_29355001 RAL-377 2965 chr3R 29362850 29362887 chr3R 29362959 29362996 17 109 0.0 5.5 2.8 4.5 146 chr3R 29362850 intergenic not near genes chr3R 29362923 intergenic not near genes chr3R 29362996 intergenic not near genes chr3R_17_29360001 chr3R_29360001 RAL-377 2966 chr3R 29365369 29365407 chr3R 29365471 29365509 15 101 3.0 4.5 3.8 3.1 140 chr3R 29365369 intergenic not near genes chr3R 29365439 intergenic not near genes chr3R 29365509 intergenic not near genes chr3R_15_29365001 chr3R_29365001 RAL-377 2967 chr3R 29376342 29376364 chr3R 29376450 29376472 12 107 5.5 0.5 3.0 3.0 130 chr3R 29376342 intergenic not near genes chr3R 29376407 intergenic not near genes chr3R 29376472 intergenic not near genes chr3R_12_29375001 chr3R_29375001 RAL-377 2968 chr3R 29406614 29406642 chr3R 29407920 29407943 jockey 5 1305 4.5 4.5 4.5 0.9 1329 chr3R 29406614 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407943 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-377 2969 chr3R 29412006 29412045 chr3R 29412096 29412114 4 87 1.0 4.5 2.8 1.1 108 chr3R 29412006 intron Ptp99A + chr3R 29412060 intron Ptp99A + chr3R 29412114 intron Ptp99A + chr3R_4_29410001 chr3R_29410001 RAL-377 2970 chr3R 29429759 29429806 chr3R 29429857 29429891 14 93 3.0 2.0 2.5 4.0 132 chr3R 29429759 intron Ptp99A + chr3R 29429825 intron Ptp99A + chr3R 29429891 intron Ptp99A + chr3R_14_29425001 chr3R_29425001 RAL-377 2971 chr3R 29471999 29472025 chr3R 29472107 29472138 4 112 4.5 3.5 4.0 0.8 139 chr3R 29471999 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472138 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-377 2972 chr3R 29498880 29498928 chr3R 29499030 29499078 22 150 5.0 3.0 4.0 4.4 198 chr3R 29498880 3` UTR CG2010 + chr3R 29498979 intergenic Trc8 -,CG2010 + chr3R 29499078 3` UTR Trc8 - chr3R_22_29495001 chr3R_29495001 RAL-377 2973 chr3R 29505872 29505924 chr3R 29505969 29506021 12 96 5.0 2.5 3.8 2.5 149 chr3R 29505872 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506021 intergenic not near genes chr3R_12_29505001 chr3R_29505001 RAL-377 2974 chr3R 29534611 29534661 chr3R 29534782 29534832 11 170 2.0 3.5 2.8 2.9 221 chr3R 29534611 intergenic CR43613 + chr3R 29534722 5` UTR CR43613 + chr3R 29534832 5` UTR CR43613 + chr3R_11_29530001 chr3R_29530001 RAL-377 2975 chr3R 29539425 29539439 chr3R 29539506 29539535 5 92 3.5 0.0 1.8 1.8 110 chr3R 29539425 intergenic not near genes chr3R 29539480 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-377 2976 chr3R 29565755 29565764 chr3R 29565853 29565857 4 96 3.5 2.0 2.8 1.1 102 chr3R 29565755 intergenic not near genes chr3R 29565806 intergenic not near genes chr3R 29565857 intergenic not near genes chr3R_4_29565001 chr3R_29565001 RAL-377 2977 chr3R 29566361 29566410 chr3R 29566458 29566507 22 95 6.5 8.0 7.2 2.7 146 chr3R 29566361 intergenic not near genes chr3R 29566434 intergenic not near genes chr3R 29566507 intergenic not near genes chr3R_22_29565001 chr3R_29565001 RAL-377 2978 chr3R 29606084 29606116 chr3R 29606191 29606243 5 121 3.5 0.5 2.0 1.7 159 chr3R 29606084 intron alph + chr3R 29606164 intron alph + chr3R 29606243 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-377 2979 chr3R 29621058 29621079 chr3R 29621164 29621185 4 106 3.0 4.5 3.8 0.8 127 chr3R 29621058 intergenic CG1907 + chr3R 29621122 intergenic CG1907 + chr3R 29621185 intergenic CG1907 + chr3R_4_29620001 chr3R_29620001 RAL-377 2980 chr3R 29623574 29623622 chr3R 29623673 29623726 9 103 1.0 3.0 2.0 3.0 152 chr3R 29623574 intergenic not near genes chr3R 29623650 intergenic not near genes chr3R 29623726 intergenic not near genes chr3R_9_29620001 chr3R_29620001 RAL-377 2981 chr3R 29642499 29642534 chr3R 29642596 29642631 7 97 2.0 5.0 3.5 1.6 132 chr3R 29642499 intron Dop1R2 - chr3R 29642565 intron Dop1R2 - chr3R 29642631 intron Dop1R2 - chr3R_7_29640001 chr3R_29640001 RAL-377 2982 chr3R 29738247 29738292 chr3R 29739733 29739779 hobo 15 1487 6.0 6.5 6.2 2.1 1532 chr3R 29738247 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739779 5` UTR CG1969 + chr3R_15_29735001 chr3R_29735001 RAL-377 2983 chr3R 29854811 29854845 chr3R 29854911 29854939 12 98 5.0 2.0 3.5 2.7 128 chr3R 29854811 3` UTR dgt1 - chr3R 29854875 exon dgt1 - chr3R 29854939 exon dgt1 - chr3R_12_29850001 chr3R_29850001 RAL-377 2984 chr3R 29882001 29882047 chr3R 29891178 29891224 roo 19 9176 4.0 4.5 4.2 3.7 9223 chr3R 29882001 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891224 intron CG31038 + chr3R_19_29885001 chr3R_29885001 RAL-377 2985 chr3R 29950554 29950597 chr3R 29950651 29950693 14 92 4.0 1.5 2.8 3.7 139 chr3R 29950554 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950693 intergenic TkR99D - chr3R_14_29950001 chr3R_29950001 RAL-377 2986 chr3R 29963474 29963510 chr3R 29963596 29963632 15 120 2.0 4.0 3.0 3.8 158 chr3R 29963474 intron TkR99D - chr3R 29963553 intron TkR99D - chr3R 29963632 intron TkR99D - chr3R_15_29960001 chr3R_29960001 RAL-377 2987 chr3R 29966056 29966068 chr3R 29966146 29966165 7 96 1.0 7.5 4.2 1.3 109 chr3R 29966056 intron TkR99D - chr3R 29966110 intron TkR99D - chr3R 29966165 intron TkR99D - chr3R_7_29965001 chr3R_29965001 RAL-377 2988 chr3R 30032138 30032160 chr3R 30032237 30032259 10 97 10.0 4.5 7.2 1.2 121 chr3R 30032138 intron Axn + chr3R 30032198 intron Axn + chr3R 30032259 intron Axn + chr3R_10_30030001 chr3R_30030001 RAL-377 2989 chr3R 30051981 30051996 chr3R 30052097 30052118 6 118 4.0 9.0 6.5 0.8 137 chr3R 30051981 5` UTR,5` UTR CG15528 -,CR44046 + chr3R 30052050 5` UTR,5` UTR CG15528 -,CR44046 + chr3R 30052118 5` UTR CR44046 + chr3R_6_30050001 chr3R_30050001 RAL-377 2990 chr3R 30061157 30061179 chr3R 30061256 30061278 6 99 10.0 5.0 7.5 0.7 121 chr3R 30061157 intron sima + chr3R 30061218 intron sima + chr3R 30061278 intron sima + chr3R_6_30060001 chr3R_30060001 RAL-377 2991 chr3R 30082968 30083012 chr3R 30083064 30083108 5 96 3.0 3.5 3.2 1.2 140 chr3R 30082968 intron sima + chr3R 30083038 intron sima + chr3R 30083108 intron sima + chr3R_5_30080001 chr3R_30080001 RAL-377 2992 chr3R 30084837 30084873 chr3R 30086324 30086360 hobo 9 1482 4.5 4.0 4.2 1.7 1523 chr3R 30084837 intron sima + chr3R 30085598 intron sima + chr3R 30086360 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-377 2993 chr3R 30147835 30147874 chr3R 30147941 30147980 13 105 0.0 6.0 3.0 3.2 145 chr3R 30147835 intron AdoR - chr3R 30147908 intron AdoR - chr3R 30147980 intron AdoR - chr3R_13_30145001 chr3R_30145001 RAL-377 2994 chr3R 30177727 30177768 chr3R 30177864 30177905 4 135 4.5 6.5 5.5 0.6 178 chr3R 30177727 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177905 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-377 2995 chr3R 30224366 30224410 chr3R 30224478 30224523 9 110 1.5 2.0 1.8 3.2 157 chr3R 30224366 intergenic not near genes chr3R 30224444 intergenic not near genes chr3R 30224523 intergenic not near genes chr3R_9_30220001 chr3R_30220001 RAL-377 2996 chr3R 30238741 30238784 chr3R 30239925 30239969 1360 13 1184 2.5 0.0 1.2 5.9 1228 chr3R 30238741 intergenic not near genes chr3R 30239355 intergenic not near genes chr3R 30239969 intergenic not near genes chr3R_13_30235001 chr3R_30235001 RAL-377 2997 chr3R 30246312 30246332 chr3R 30246408 30246431 4 98 0.0 6.5 3.2 1.0 119 chr3R 30246312 intron CG9733 - chr3R 30246372 intron CG9733 - chr3R 30246431 intron CG9733 - chr3R_4_30245001 chr3R_30245001 RAL-377 2998 chr3R 30268227 30268251 chr3R 30268323 30268325 4 92 11.0 1.5 6.2 0.6 98 chr3R 30268227 intergenic not near genes chr3R 30268276 intergenic not near genes chr3R 30268325 intergenic not near genes chr3R_4_30265001 chr3R_30265001 RAL-377 2999 chr3R 30268405 30268447 chr3R 30268500 30268509 7 94 3.0 2.5 2.8 1.8 104 chr3R 30268405 intergenic not near genes chr3R 30268457 intergenic not near genes chr3R 30268509 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-377 3000 chr3R 30317335 30317358 chr3R 30324944 30324970 roo 4 7608 0.0 4.5 2.2 1.2 7635 chr3R 30317335 intron hdc + chr3R 30321152 intron hdc + chr3R 30324970 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-377 3001 chr3R 30375519 30375562 chr3R 30383164 30383207 412 9 7642 6.0 4.5 5.2 1.5 7688 chr3R 30375519 intergenic not near genes chr3R 30379363 intergenic not near genes chr3R 30383207 intergenic not near genes chr3R_9_30375001 chr3R_30375001 RAL-377 3002 chr3R 30396196 30396240 chr3R 30404482 30404526 roo 12 8283 4.0 4.5 4.2 2.3 8330 chr3R 30396196 intergenic not near genes chr3R 30400361 intergenic not near genes chr3R 30404526 5` UTR CR45570 + chr3R_12_30400001 chr3R_30400001 RAL-377 3003 chr3R 30627590 30627628 chr3R 30627681 30627728 7 93 5.5 2.0 3.8 1.5 138 chr3R 30627590 3` UTR CG2267 - chr3R 30627659 exon CG2267 - chr3R 30627728 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-377 3004 chr3R 30649847 30649874 chr3R 30649948 30649975 6 101 2.5 1.5 2.0 2.0 128 chr3R 30649847 3` UTR CG34432 + chr3R 30649911 intergenic CG34432 +,CG34433 + chr3R 30649975 exon CG34433 + chr3R_6_30645001 chr3R_30645001 RAL-377 3005 chr3R 30650799 30650807 chr3R 30650916 30650924 5 117 0.0 6.5 3.2 1.2 125 chr3R 30650799 3` UTR CG34433 + chr3R 30650862 intergenic CG34433 + chr3R 30650924 intergenic CG34433 + chr3R_5_30650001 chr3R_30650001 RAL-377 3006 chr3R 30679497 30679552 chr3R 30686986 30687041 blood 10 7487 3.5 2.0 2.8 2.6 7544 chr3R 30679497 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687041 intergenic not near genes chr3R_10_30680001 chr3R_30680001 RAL-377 3007 chr3R 30690148 30690190 chr3R 30690249 30690294 12 103 3.5 4.5 4.0 2.4 146 chr3R 30690148 intergenic Spn100A + chr3R 30690221 intergenic Spn100A + chr3R 30690294 intergenic Spn100A + chr3R_12_30690001 chr3R_30690001 RAL-377 3008 chr3R 30700851 30700872 chr3R 30700994 30701015 6 142 1.5 0.0 0.8 3.3 164 chr3R 30700851 intergenic not near genes chr3R 30700933 intergenic not near genes chr3R 30701015 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-377 3009 chr3R 30737929 30737970 chr3R 30738043 30738078 13 112 5.5 3.5 4.5 2.4 149 chr3R 30737929 intergenic not near genes chr3R 30738004 intergenic not near genes chr3R 30738078 intergenic not near genes chr3R_13_30735001 chr3R_30735001 RAL-377 3010 chr3R 30818793 30818838 chr3R 30820378 30820423 1360 19 1584 9.0 8.5 8.8 1.9 1630 chr3R 30818793 intron cindr + chr3R 30819608 intron cindr + chr3R 30820423 intron cindr + chr3R_19_30815001 chr3R_30815001 RAL-377 3011 chr3R 30850221 30850267 chr3R 30850333 30850379 17 112 4.0 5.5 4.8 2.9 158 chr3R 30850221 intergenic not near genes chr3R 30850300 intergenic not near genes chr3R 30850379 intergenic not near genes chr3R_17_30850001 chr3R_30850001 RAL-377 3012 chr3R 30888922 30888949 chr3R 30893429 30893477 19 4509 33.0 48.5 40.8 0.5 4555 chr3R 30888922 exon Sap-r - chr3R 30891200 intergenic not near genes chr3R 30893477 intergenic not near genes chr3R_19_30890001 chr3R_30890001 RAL-377 3013 chr3R 30900516 30900550 chr3R 30900601 30900650 14 96 4.0 6.5 5.2 2.3 134 chr3R 30900516 exon Cyp4c3 + chr3R 30900583 3` UTR Cyp4c3 + chr3R 30900650 3` UTR Cyp4c3 + chr3R_14_30900001 chr3R_30900001 RAL-377 3014 chr3R 30948070 30948094 chr3R 30948274 30948305 5 209 2.5 2.0 2.2 1.6 235 chr3R 30948070 intergenic not near genes chr3R 30948188 intergenic not near genes chr3R 30948305 intergenic not near genes chr3R_5_30945001 chr3R_30945001 RAL-377 3015 chr3R 30965848 30965889 chr3R 30965954 30965977 11 103 1.0 2.0 1.5 4.4 129 chr3R 30965848 intergenic not near genes chr3R 30965912 intergenic not near genes chr3R 30965977 intergenic not near genes chr3R_11_30965001 chr3R_30965001 RAL-377 3016 chr3R 31074224 31074261 chr3R 31081830 31081879 springer 16 7616 3.0 3.5 3.2 3.8 7655 chr3R 31074224 intron Sox100B + chr3R 31078052 intron Sox100B + chr3R 31081879 intron Sox100B + chr3R_16_31075001 chr3R_31075001 RAL-377 3017 chr3R 31137137 31137185 chr3R 31137237 31137282 15 99 2.0 2.5 2.2 4.7 145 chr3R 31137137 intron Gycbeta100B + chr3R 31137210 intron Gycbeta100B + chr3R 31137282 intron Gycbeta100B + chr3R_15_31135001 chr3R_31135001 RAL-377 3018 chr3R 31279365 31279408 chr3R 31285564 31285619 diver 10 6206 4.5 3.5 4.0 2.0 6254 chr3R 31279365 intergenic not near genes chr3R 31282492 intergenic not near genes chr3R 31285619 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-377 3019 chr3R 31413073 31413122 chr3R 31418293 31418319 copia 15 5214 2.0 3.0 2.5 4.3 5246 chr3R 31413073 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_15_31415001 chr3R_31415001 RAL-377 3020 chr3R 31422522 31422553 chr3R 31422633 31422653 13 108 5.0 3.5 4.2 2.5 131 chr3R 31422522 intron Gprk2 + chr3R 31422588 intron Gprk2 + chr3R 31422653 intron Gprk2 + chr3R_13_31420001 chr3R_31420001 RAL-377 3021 chr3R 31426866 31426914 chr3R 31426978 31427026 10 112 5.5 8.0 6.8 1.3 160 chr3R 31426866 intron Gprk2 + chr3R 31426946 intron Gprk2 + chr3R 31427026 intron Gprk2 + chr3R_10_31425001 chr3R_31425001 RAL-377 3022 chr3R 31435345 31435390 chr3R 31435517 31435562 23 172 5.5 8.0 6.8 2.9 217 chr3R 31435345 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435562 intron Gprk2 + chr3R_23_31435001 chr3R_31435001 RAL-377 3023 chr3R 31442254 31442297 chr3R 31442359 31442402 18 104 3.5 3.5 3.5 4.0 148 chr3R 31442254 intron Gprk2 + chr3R 31442328 intron Gprk2 + chr3R 31442402 intron Gprk2 + chr3R_18_31440001 chr3R_31440001 RAL-377 3024 chr3R 31446071 31446101 chr3R 31446181 31446214 7 110 4.0 3.5 3.8 1.5 143 chr3R 31446071 intron Gprk2 + chr3R 31446142 intron Gprk2 + chr3R 31446214 intron Gprk2 + chr3R_7_31445001 chr3R_31445001 RAL-377 3025 chr3R 31503105 31503152 chr3R 31503222 31503269 16 116 3.5 4.5 4.0 3.2 164 chr3R 31503105 exon mey + chr3R 31503187 intron mey + chr3R 31503269 intron mey + chr3R_16_31500001 chr3R_31500001 RAL-377 3026 chr3R 31530830 31530847 chr3R 31531143 31531194 5 331 1.0 5.0 3.0 1.2 364 chr3R 31530830 intergenic not near genes chr3R 31531012 intergenic not near genes chr3R 31531194 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-377 3027 chr3R 31610095 31610146 chr3R 31610201 31610252 24 106 5.0 5.0 5.0 4.0 157 chr3R 31610095 intron CycG - chr3R 31610174 intron CycG - chr3R 31610252 intron CycG - chr3R_24_31610001 chr3R_31610001 RAL-377 3028 chr3R 31691519 31691559 chr3R 31696305 31696345 Doc 10 4785 3.0 4.0 3.5 2.2 4826 chr3R 31691519 intergenic not near genes chr3R 31693932 intergenic not near genes chr3R 31696345 intergenic not near genes chr3R_10_31690001 chr3R_31690001 RAL-377 3029 chr3R 31699710 31699748 chr3R 31699812 31699850 6 96 1.5 2.5 2.0 2.0 140 chr3R 31699710 intergenic not near genes chr3R 31699780 intergenic not near genes chr3R 31699850 intergenic not near genes chr3R_6_31695001 chr3R_31695001 RAL-377 3030 chr3R 31930883 31930932 chr3R 31931002 31931050 14 116 2.0 2.5 2.2 4.4 167 chr3R 31930883 intron heph - chr3R 31930966 intron heph - chr3R 31931050 intron heph - chr3R_14_31930001 chr3R_31930001 RAL-377 3031 chr3R 31948418 31948464 chr3R 31948522 31948568 16 98 5.0 2.5 3.8 3.3 150 chr3R 31948418 intron heph - chr3R 31948493 intron heph - chr3R 31948568 intron heph - chr3R_16_31945001 chr3R_31945001 RAL-377 3032 chr3R 31961321 31961366 chr3R 31961424 31961469 11 99 2.5 5.5 4.0 2.2 148 chr3R 31961321 intron heph - chr3R 31961395 intron heph - chr3R 31961469 intron heph - chr3R_11_31960001 chr3R_31960001 RAL-377 3033 chr3R 31962057 31962094 chr3R 31962383 31962420 9 326 2.5 0.0 1.2 4.1 363 chr3R 31962057 intron heph - chr3R 31962238 intron heph - chr3R 31962420 intron heph - chr3R_9_31960001 chr3R_31960001 RAL-377 3034 chr3R 31976537 31976575 chr3R 31976838 31976876 15 301 0.0 1.5 0.8 8.3 339 chr3R 31976537 intron heph - chr3R 31976706 intron heph - chr3R 31976876 intron heph - chr3R_15_31975001 chr3R_31975001 RAL-377 3035 chr3R 31997975 31998020 chr3R 32005460 32005507 blood 11 7489 4.0 4.0 4.0 2.2 7532 chr3R 31997975 intron heph - chr3R 32001741 intron heph - chr3R 32005507 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-377 3036 chr3R 32043354 32043399 chr3R 32043513 32043568 8 165 19.0 30.0 24.5 0.3 214 chr3R 32043354 intergenic not near genes chr3R 32043461 intergenic not near genes chr3R 32043568 intergenic not near genes chr3R_8_32040001 chr3R_32040001 RAL-377 3037 chr4 76477 76509 chr4 81940 81972 I-element 9 5459 9.5 3.0 6.2 1.2 5495 chr4 76477 intron pan + chr4 79224 intron pan + chr4 81972 intron pan + chr4_9_75001 chr4_75001 RAL-377 3038 chr4 257384 257438 chr4 257571 257628 15 190 2.0 3.5 2.8 3.9 244 chr4 257384 exon RhoGAP102A + chr4 257506 intron RhoGAP102A + chr4 257628 intron RhoGAP102A + chr4_15_255001 chr4_255001 RAL-377 3039 chr4 280785 280796 chr4 281434 281446 5 650 11.0 3.0 7.0 0.6 661 chr4 280785 intron Syt7 - chr4 281116 intron Syt7 - chr4 281446 intron Syt7 - chr4_5_280001 chr4_280001 RAL-377 3040 chr4 293851 293899 chr4 294116 294164 17 265 6.0 5.5 5.8 2.5 313 chr4 293851 intron Syt7 - chr4 294008 intron Syt7 - chr4 294164 intron Syt7 - chr4_17_290001 chr4_290001 RAL-377 3041 chr4 314493 314534 chr4 314591 314632 14 98 2.5 3.0 2.8 3.7 139 chr4 314493 intergenic Zip102B -,CG32850 + chr4 314562 intergenic CG32850 +,Zip102B - chr4 314632 intergenic CG32850 + chr4_14_310001 chr4_310001 RAL-377 3042 chr4 319971 320019 chr4 328167 328215 Stalker2 15 8196 6.0 4.5 5.2 2.4 8244 chr4 319971 3` UTR CG32850 + chr4 324093 intron CG32850 + chr4 328215 3` UTR,3` UTR CG32850 +,PMCA - chr4_15_320001 chr4_320001 RAL-377 3043 chr4 368682 368710 chr4 368834 368860 9 152 4.0 5.5 4.8 1.6 178 chr4 368682 intron Hcf + chr4 368771 intron Hcf + chr4 368860 intron Hcf + chr4_9_365001 chr4_365001 RAL-377 3044 chr4 418216 418267 chr4 418330 418381 24 113 3.0 5.5 4.2 4.6 165 chr4 418216 intergenic not near genes chr4 418298 intergenic not near genes chr4 418381 intergenic not near genes chr4_24_415001 chr4_415001 RAL-377 3045 chr4 419463 419513 chr4 419675 419724 5 211 34.0 34.5 34.2 0.1 261 chr4 419463 intergenic not near genes chr4 419594 intergenic not near genes chr4 419724 intergenic not near genes chr4_5_415001 chr4_415001 RAL-377 3046 chr4 654355 654399 chr4 654458 654502 15 103 4.0 6.5 5.2 2.4 147 chr4 654355 intron gw - chr4 654428 intron gw - chr4 654502 intron gw - chr4_15_650001 chr4_650001 RAL-377 3047 chr4 671586 671629 chr4 680189 680232 Tirant 13 8600 7.5 5.5 6.5 1.7 8646 chr4 671586 intron CG11360 + chr4 675909 intron CG11360 + chr4 680232 intron CG11360 + chr4_13_675001 chr4_675001 RAL-377 3048 chr4 896769 896818 chr4 896866 896916 16 98 5.0 4.0 4.5 2.9 147 chr4 896769 intron unc-13 - chr4 896842 intron unc-13 - chr4 896916 intron unc-13 - chr4_16_895001 chr4_895001 RAL-377 3049 chr4 905552 905594 chr4 905654 905696 11 102 7.5 7.0 7.2 1.3 144 chr4 905552 5` UTR unc-13 - chr4 905624 5` UTR unc-13 - chr4 905696 5` UTR unc-13 - chr4_11_905001 chr4_905001 RAL-377 3050 chr4 1231209 1231252 chr4 1231361 1231397 16 151 7.5 5.0 6.2 2.2 188 chr4 1231209 intron Caps + chr4 1231303 intron Caps + chr4 1231397 intron Caps + chr4_16_1230001 chr4_1230001 RAL-377 3051 chr4 1250545 1250584 chr4 1250650 1250690 12 106 2.5 3.0 2.8 3.2 145 chr4 1250545 intron Caps + chr4 1250618 intron Caps + chr4 1250690 intron Caps + chr4_12_1250001 chr4_1250001 RAL-377 3052 chrX 295840 295879 chrX 303480 303519 412 10 7639 4.5 5.0 4.8 1.7 7679 chrX 295840 intron CG3777 + chrX 299680 intron CG3777 + chrX 303519 intron CG3777 + chrX_10_295001 chrX_295001 RAL-377 3053 chrX 318454 318494 chrX 323560 323600 flea 14 5104 4.5 6.5 5.5 2.2 5146 chrX 318454 intron,intron CG3777 +,CG32816 - chrX 321027 intron,intron CG3777 +,CG32816 - chrX 323600 intron,intron CG3777 +,CG32816 - chrX_14_320001 chrX_320001 RAL-377 3054 chrX 325612 325647 chrX 325717 325752 10 104 4.5 2.5 3.5 2.2 140 chrX 325612 intron,intron CG3777 +,CG32816 - chrX 325682 intron,intron CG3777 +,CG32816 - chrX 325752 intron,intron CG3777 +,CG32816 - chrX_10_325001 chrX_325001 RAL-377 3055 chrX 428401 428450 chrX 434606 434655 3S18 26 6205 3.5 4.0 3.8 5.4 6254 chrX 428401 intron CG32816 - chrX 431528 intron CG32816 - chrX 434655 intron CG32816 - chrX_26_430001 chrX_430001 RAL-377 3056 chrX 447256 447305 chrX 447431 447467 9 165 5.5 5.5 5.5 1.4 211 chrX 447256 intron CG32816 - chrX 447362 intron CG32816 - chrX 447467 intron CG32816 - chrX_9_445001 chrX_445001 RAL-377 3057 chrX 450345 450393 chrX 450443 450491 19 98 4.0 4.0 4.0 3.8 146 chrX 450345 intron CG32816 - chrX 450418 intron CG32816 - chrX 450491 intron CG32816 - chrX_19_450001 chrX_450001 RAL-377 3058 chrX 544108 544110 chrX 22519263 22519265 4 21975155 12.0 4.0 8.0 0.4 21975157 chrX 544108 intron Appl + chrX 11531686 intron Drak + chrX 22519265 intron CG17600 + chrX_4_11530001 chrX_11530001 RAL-377 3059 chrX 551418 551427 chrX 559000 559009 412 4 7581 2.0 1.5 1.8 1.4 7591 chrX 551418 intron Appl + chrX 555214 intron Appl + chrX 559009 intron Appl + chrX_4_555001 chrX_555001 RAL-377 3060 chrX 667627 667682 chrX 667731 667786 15 103 3.0 1.5 2.2 4.7 159 chrX 667627 intergenic not near genes chrX 667706 intergenic not near genes chrX 667786 intergenic not near genes chrX_15_665001 chrX_665001 RAL-377 3061 chrX 812248 812286 chrX 817901 817928 297 7 5650 3.5 5.0 4.2 1.3 5680 chrX 812248 intron CG43867 - chrX 815088 intron CG43867 - chrX 817928 intron CG43867 - chrX_7_815001 chrX_815001 RAL-377 3062 chrX 827586 827631 chrX 835396 835443 roo 11 7810 2.5 5.0 3.8 2.3 7857 chrX 827586 intron CG43867 - chrX 831514 intron CG43867 - chrX 835443 intron CG43867 - chrX_11_830001 chrX_830001 RAL-377 3063 chrX 906682 906732 chrX 908491 908539 S-element 11 1808 4.0 17.0 10.5 1.0 1857 chrX 906682 intron CG43867 - chrX 907610 intron CG43867 - chrX 908539 intron CG43867 - chrX_11_905001 chrX_905001 RAL-377 3064 chrX 961994 962020 chrX 962480 962506 9 486 6.0 2.5 4.2 1.7 512 chrX 961994 intergenic not near genes chrX 962250 intergenic not near genes chrX 962506 intergenic not near genes chrX_9_960001 chrX_960001 RAL-377 3065 chrX 1091941 1091979 chrX 1092133 1092171 6 191 2.0 3.5 2.8 1.6 230 chrX 1091941 intron CG3655 - chrX 1092056 intron CG3655 - chrX 1092171 intron CG3655 - chrX_6_1090001 chrX_1090001 RAL-377 3066 chrX 1169755 1169782 chrX 1169844 1169869 9 95 4.5 5.5 5.0 1.5 114 chrX 1169755 intergenic not near genes chrX 1169812 intergenic not near genes chrX 1169869 intergenic not near genes chrX_9_1165001 chrX_1165001 RAL-377 3067 chrX 1179959 1179969 chrX 1180061 1180071 8 102 4.0 0.5 2.2 2.5 112 chrX 1179959 intergenic CG11379 + chrX 1180015 intergenic CG11379 + chrX 1180071 intergenic CG11379 + chrX_8_1180001 chrX_1180001 RAL-377 3068 chrX 1357760 1357799 chrX 1367950 1367989 Doc 14 10190 3.5 4.5 4.0 2.8 10229 chrX 1357760 intergenic png - chrX 1362874 intergenic not near genes chrX 1367989 intergenic not near genes chrX_14_1360001 chrX_1360001 RAL-377 3069 chrX 1416408 1416421 chrX 1416480 1416520 5 93 2.5 6.0 4.2 1.0 112 chrX 1416408 intron futsch + chrX 1416464 intron futsch + chrX 1416520 intron futsch + chrX_5_1415001 chrX_1415001 RAL-377 3070 chrX 1518020 1518073 chrX 1523442 1523475 jockey 12 5417 1.5 3.5 2.5 3.4 5455 chrX 1518020 intergenic inc + chrX 1520748 intergenic not near genes chrX 1523475 intergenic not near genes chrX_12_1520001 chrX_1520001 RAL-377 3071 chrX 1651639 1651655 chrX 1651739 1651756 6 101 9.5 8.0 8.8 0.6 117 chrX 1651639 intron Mur2B - chrX 1651698 intron Mur2B - chrX 1651756 intron Mur2B - chrX_6_1650001 chrX_1650001 RAL-377 3072 chrX 1930530 1930570 chrX 1938121 1938161 opus 19 7591 2.5 5.5 4.0 3.8 7631 chrX 1930530 intergenic CG11596 + chrX 1934346 intergenic not near genes chrX 1938161 3` UTR CG3857 - chrX_19_1930001 chrX_1930001 RAL-377 3073 chrX 1954889 1954917 chrX 1962824 1962874 Stalker2 6 7940 1.0 1.5 1.2 2.7 7985 chrX 1954889 intron Hr4 + chrX 1958882 intron Hr4 + chrX 1962874 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-377 3074 chrX 2023938 2023988 chrX 2024081 2024131 15 141 25.0 29.5 27.2 0.5 193 chrX 2023938 3` UTR,3` UTR east +,Actn - chrX 2024034 3` UTR,3` UTR east +,Actn - chrX 2024131 3` UTR,3` UTR east +,Actn - chrX_15_2020001 chrX_2020001 RAL-377 3075 chrX 2394272 2394297 chrX 2394364 2394399 5 97 5.0 3.0 4.0 1.0 127 chrX 2394272 intergenic not near genes chrX 2394336 intergenic not near genes chrX 2394399 intergenic not near genes chrX_5_2390001 chrX_2390001 RAL-377 3076 chrX 2399822 2399865 chrX 2408188 2408219 roo 10 8364 5.5 4.5 5.0 1.7 8397 chrX 2399822 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408219 intergenic not near genes chrX_10_2400001 chrX_2400001 RAL-377 3077 chrX 2517830 2517876 chrX 2517927 2517973 8 97 4.5 3.0 3.8 1.7 143 chrX 2517830 intron trol - chrX 2517902 intron trol - chrX 2517973 intron trol - chrX_8_2515001 chrX_2515001 RAL-377 3078 chrX 2525477 2525506 chrX 2525558 2525607 9 93 2.5 4.5 3.5 2.0 130 chrX 2525477 intron trol - chrX 2525542 intron trol - chrX 2525607 intron trol - chrX_9_2525001 chrX_2525001 RAL-377 3079 chrX 2559339 2559388 chrX 2559447 2559496 11 106 1.5 2.5 2.0 3.7 157 chrX 2559339 intron Pdfr + chrX 2559418 intron Pdfr + chrX 2559496 intron Pdfr + chrX_11_2555001 chrX_2555001 RAL-377 3080 chrX 2568189 2568226 chrX 2568453 2568487 7 263 3.5 6.0 4.8 1.2 298 chrX 2568189 intron Pdfr + chrX 2568338 intron Pdfr + chrX 2568487 intron Pdfr + chrX_7_2565001 chrX_2565001 RAL-377 3081 chrX 2578797 2578811 chrX 2578908 2578923 4 112 7.0 4.0 5.5 0.6 126 chrX 2578797 intergenic Pdfr +,Vha36-3 - chrX 2578860 intergenic Pdfr +,Vha36-3 - chrX 2578923 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-377 3082 chrX 2578813 2578844 chrX 2578900 2578953 13 108 7.0 2.0 4.5 2.4 140 chrX 2578813 intergenic Pdfr +,Vha36-3 - chrX 2578883 intergenic Vha36-3 -,Pdfr + chrX 2578953 intergenic Vha36-3 -,Pdfr + chrX_13_2575001 chrX_2575001 RAL-377 3083 chrX 2844882 2844924 chrX 2852312 2852354 mdg1 13 7429 4.5 5.5 5.0 2.2 7472 chrX 2844882 intron kirre + chrX 2848618 intron kirre + chrX 2852354 intron kirre + chrX_13_2845001 chrX_2845001 RAL-377 3084 chrX 2888106 2888147 chrX 2888204 2888243 11 95 2.0 3.0 2.5 3.1 137 chrX 2888106 intron kirre + chrX 2888174 intron kirre + chrX 2888243 intron kirre + chrX_11_2885001 chrX_2885001 RAL-377 3085 chrX 3028789 3028809 chrX 3028897 3028902 4 104 2.0 3.5 2.8 1.1 113 chrX 3028789 intron kirre + chrX 3028846 intron kirre + chrX 3028902 intron kirre + chrX_4_3025001 chrX_3025001 RAL-377 3086 chrX 3038731 3038759 chrX 3038823 3038867 11 105 3.0 3.0 3.0 2.8 136 chrX 3038731 intron kirre + chrX 3038799 intron kirre + chrX 3038867 intron kirre + chrX_11_3035001 chrX_3035001 RAL-377 3087 chrX 3058003 3058048 chrX 3058263 3058309 pogo 11 261 3.5 3.0 3.2 2.6 306 chrX 3058003 intron kirre + chrX 3058156 intron kirre + chrX 3058309 intron kirre + chrX_11_3055001 chrX_3055001 RAL-377 3088 chrX 3203452 3203491 chrX 3203670 3203710 7 219 0.5 4.0 2.2 2.2 258 chrX 3203452 intron dnc + chrX 3203581 intron dnc + chrX 3203710 intron dnc + chrX_7_3200001 chrX_3200001 RAL-377 3089 chrX 3306152 3306373 chrX 3306252 3306475 15 98 2.0 3.5 2.8 3.9 323 chrX 3306152 intron dnc + chrX 3306314 intron dnc + chrX 3306475 intron dnc + chrX_15_3305001 chrX_3305001 RAL-377 3090 chrX 3323124 3323167 chrX 3323227 3323270 10 103 3.5 4.0 3.8 2.1 146 chrX 3323124 intron,intron dnc +,CR44886 - chrX 3323197 intron,intron dnc +,CR44886 - chrX 3323270 intron,intron dnc +,CR44886 - chrX_10_3320001 chrX_3320001 RAL-377 3091 chrX 3341273 3341314 chrX 3345459 3345500 12 4186 24.5 12.5 18.5 0.6 4227 chrX 3341273 3` UTR,intron dnc +,CR44886 - chrX 3343386 3` UTR,intron dnc +,CR44886 - chrX 3345500 intron CR44886 - chrX_12_3340001 chrX_3340001 RAL-377 3092 chrX 3351799 3351814 chrX 3351904 3351920 4 104 4.0 7.5 5.8 0.6 121 chrX 3351799 intergenic not near genes chrX 3351860 intergenic not near genes chrX 3351920 intergenic not near genes chrX_4_3350001 chrX_3350001 RAL-377 3093 chrX 3398124 3398157 chrX 3398225 3398258 11 100 8.0 6.5 7.2 1.3 134 chrX 3398124 intron,intron CR44999 +,CG12535 - chrX 3398191 intron,intron CR44999 +,CG12535 - chrX 3398258 intron,intron CR44999 +,CG12535 - chrX_11_3395001 chrX_3395001 RAL-377 3094 chrX 3415015 3415050 chrX 3421220 3421253 3S18 6 6203 0.0 7.0 3.5 1.3 6238 chrX 3415015 intron,intron CR44999 +,CG12535 - chrX 3418134 intron,intron CR44999 +,CG12535 - chrX 3421253 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-377 3095 chrX 3493074 3493092 chrX 3502253 3502271 roo 5 9179 5.5 2.5 4.0 1.0 9197 chrX 3493074 intron,intron CR44999 +,Gas8 - chrX 3497672 intron,intron CR44999 +,Gas8 - chrX 3502271 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-377 3096 chrX 3597536 3597578 chrX 3619724 3619766 roo 15 22188 2.0 2.0 2.0 5.0 22230 chrX 3597536 intron AstA-R1 + chrX 3608651 intron AstA-R1 + chrX 3619766 intron AstA-R1 + chrX_15_3605001 chrX_3605001 RAL-377 3097 chrX 3629831 3629881 chrX 3629936 3629986 20 105 2.5 1.5 2.0 6.7 155 chrX 3629831 intron AstA-R1 + chrX 3629908 intron AstA-R1 + chrX 3629986 intron AstA-R1 + chrX_20_3625001 chrX_3625001 RAL-377 3098 chrX 3630523 3630571 chrX 3630619 3630657 8 94 2.0 4.5 3.2 1.9 134 chrX 3630523 intron AstA-R1 + chrX 3630590 intron AstA-R1 + chrX 3630657 intron AstA-R1 + chrX_8_3630001 chrX_3630001 RAL-377 3099 chrX 3657397 3657444 chrX 3657496 3657544 11 99 1.5 2.5 2.0 3.7 147 chrX 3657397 intron AstA-R1 + chrX 3657470 intron AstA-R1 + chrX 3657544 intron AstA-R1 + chrX_11_3655001 chrX_3655001 RAL-377 3100 chrX 3713085 3713134 chrX 3713213 3713263 11 129 6.0 5.5 5.8 1.6 178 chrX 3713085 intron Rala - chrX 3713174 intron Rala - chrX 3713263 intron Rala - chrX_11_3710001 chrX_3710001 RAL-377 3101 chrX 3726749 3726795 chrX 3730166 3730202 NOF 12 3415 3.0 4.0 3.5 2.7 3453 chrX 3726749 intron tlk + chrX 3728476 intron tlk + chrX 3730202 intron tlk + chrX_12_3725001 chrX_3725001 RAL-377 3102 chrX 3752390 3752402 chrX 3764759 3764770 17.6 4 12369 14.5 6.0 10.2 0.4 12380 chrX 3752390 intron tlk + chrX 3758580 intron tlk + chrX 3764770 intron tlk + chrX_4_3755001 chrX_3755001 RAL-377 3103 chrX 3842331 3842347 chrX 3842569 3842585 pogo 6 238 3.5 3.0 3.2 1.4 254 chrX 3842331 intron ec + chrX 3842458 intron ec + chrX 3842585 intron ec + chrX_6_3840001 chrX_3840001 RAL-377 3104 chrX 3863222 3863249 chrX 3863305 3863347 5 89 2.5 1.0 1.8 1.8 125 chrX 3863222 exon yin - chrX 3863284 exon yin - chrX 3863347 exon yin - chrX_5_3860001 chrX_3860001 RAL-377 3105 chrX 3866106 3866134 chrX 3866196 3866223 9 95 2.5 2.0 2.2 2.8 117 chrX 3866106 intron yin - chrX 3866164 intron yin - chrX 3866223 intron yin - chrX_9_3865001 chrX_3865001 RAL-377 3106 chrX 3883273 3883319 chrX 3883384 3883429 6 109 2.5 2.0 2.2 1.9 156 chrX 3883273 intergenic VhaAC39-1 + chrX 3883351 intergenic VhaAC39-1 + chrX 3883429 intergenic VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-377 3107 chrX 3986851 3986895 chrX 3994504 3994548 412 12 7652 3.0 4.0 3.5 2.7 7697 chrX 3986851 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994548 intergenic not near genes chrX_12_3990001 chrX_3990001 RAL-377 3108 chrX 4029510 4029556 chrX 4029720 4029758 8 208 3.0 3.5 3.2 1.9 248 chrX 4029510 intergenic not near genes chrX 4029634 intergenic not near genes chrX 4029758 intergenic not near genes chrX_8_4025001 chrX_4025001 RAL-377 3109 chrX 4048482 4048524 chrX 4048577 4048620 17 96 3.5 1.5 2.5 4.9 138 chrX 4048482 3` UTR CR45482 - chrX 4048551 3` UTR CR45482 - chrX 4048620 3` UTR CR45482 - chrX_17_4045001 chrX_4045001 RAL-377 3110 chrX 4101850 4101897 chrX 4101949 4101997 12 97 1.0 2.5 1.8 4.3 147 chrX 4101850 exon CG15375 + chrX 4101924 exon CG15375 + chrX 4101997 exon CG15375 + chrX_12_4100001 chrX_4100001 RAL-377 3111 chrX 4132652 4132693 chrX 4132841 4132882 16 188 4.0 4.5 4.2 3.1 230 chrX 4132652 3` UTR GlcAT-I + chrX 4132767 3` UTR GlcAT-I + chrX 4132882 intergenic Fas2 -,GlcAT-I + chrX_16_4130001 chrX_4130001 RAL-377 3112 chrX 4157877 4157879 chrX 4164950 4164951 297 5 7073 3.5 2.0 2.8 1.3 7074 chrX 4157877 intron Fas2 - chrX 4161414 intron Fas2 - chrX 4164951 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-377 3113 chrX 4263594 4263606 chrX 4263694 4263707 4 101 4.0 3.5 3.8 0.8 113 chrX 4263594 intergenic not near genes chrX 4263650 intergenic not near genes chrX 4263707 intergenic not near genes chrX_4_4260001 chrX_4260001 RAL-377 3114 chrX 4296102 4296147 chrX 4296197 4296243 12 96 2.0 1.5 1.8 4.3 141 chrX 4296102 intergenic not near genes chrX 4296172 intergenic not near genes chrX 4296243 intergenic not near genes chrX_12_4295001 chrX_4295001 RAL-377 3115 chrX 4361418 4361461 chrX 4361515 4361553 13 95 2.5 4.5 3.5 2.9 135 chrX 4361418 intron norpA + chrX 4361486 intron norpA + chrX 4361553 intron norpA + chrX_13_4360001 chrX_4360001 RAL-377 3116 chrX 4396966 4397007 chrX 4397064 4397112 11 104 3.0 2.5 2.8 2.9 146 chrX 4396966 intron CR32773 - chrX 4397039 intron CR32773 - chrX 4397112 intron CR32773 - chrX_11_4395001 chrX_4395001 RAL-377 3117 chrX 4417508 4417545 chrX 4418165 4418199 11 656 4.0 1.5 2.8 2.9 691 chrX 4417508 intron,intron CR32773 -,bi + chrX 4417854 intron,intron CR32773 -,bi + chrX 4418199 intron,intron CR32773 -,bi + chrX_11_4415001 chrX_4415001 RAL-377 3118 chrX 4525313 4525364 chrX 4525429 4525443 8 106 2.5 4.0 3.2 1.9 130 chrX 4525313 intron CR32773 - chrX 4525378 intron CR32773 - chrX 4525443 intron CR32773 - chrX_8_4525001 chrX_4525001 RAL-377 3119 chrX 4627434 4627448 chrX 4631501 4631515 6 4067 12.5 5.0 8.8 0.6 4081 chrX 4627434 3` UTR CG12184 - chrX 4629474 exon CG12184 - chrX 4631515 3` UTR CG12179 - chrX_6_4625001 chrX_4625001 RAL-377 3120 chrX 4660799 4660817 chrX 4660918 4660930 5 118 6.5 0.0 3.2 1.2 131 chrX 4660799 intron CG3009 - chrX 4660864 intron CG3009 - chrX 4660930 intron CG3009 - chrX_5_4660001 chrX_4660001 RAL-377 3121 chrX 4700371 4700426 chrX 4700734 4700789 jockey 8 361 5.0 4.5 4.8 1.4 418 chrX 4700371 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700789 3` UTR ctp + chrX_8_4700001 chrX_4700001 RAL-377 3122 chrX 4723554 4723579 chrX 4723654 4723679 5 98 3.5 4.0 3.8 1.0 125 chrX 4723554 exon Proc-R + chrX 4723616 intron Proc-R + chrX 4723679 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-377 3123 chrX 4744142 4744173 chrX 4744260 4744286 10 117 0.5 0.0 0.2 8.3 144 chrX 4744142 intergenic not near genes chrX 4744214 intergenic not near genes chrX 4744286 intergenic not near genes chrX_10_4740001 chrX_4740001 RAL-377 3124 chrX 4757365 4757410 chrX 4757464 4757486 7 95 0.5 1.5 1.0 3.5 121 chrX 4757365 intergenic not near genes chrX 4757426 intergenic not near genes chrX 4757486 intergenic not near genes chrX_7_4755001 chrX_4755001 RAL-377 3125 chrX 4763243 4763279 chrX 4763751 4763787 Stalker4 8 508 3.5 2.5 3.0 2.0 544 chrX 4763243 intergenic not near genes chrX 4763515 intergenic not near genes chrX 4763787 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-377 3126 chrX 4792358 4792404 chrX 4792811 4792836 jockey 6 447 3.0 3.0 3.0 1.5 478 chrX 4792358 intergenic not near genes chrX 4792597 intergenic not near genes chrX 4792836 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-377 3127 chrX 4815024 4815033 chrX 4815149 4815158 4 125 0.0 10.0 5.0 0.7 134 chrX 4815024 intergenic not near genes chrX 4815091 intergenic not near genes chrX 4815158 intergenic not near genes chrX_4_4815001 chrX_4815001 RAL-377 3128 chrX 4816882 4816924 chrX 4816986 4817001 9 101 1.5 2.5 2.0 3.0 119 chrX 4816882 intergenic not near genes chrX 4816942 intergenic not near genes chrX 4817001 intergenic not near genes chrX_9_4815001 chrX_4815001 RAL-377 3129 chrX 4827993 4827998 chrX 4835357 4835389 Stalker4 7 7383 2.0 6.5 4.2 1.3 7396 chrX 4827993 intergenic not near genes chrX 4831691 intergenic not near genes chrX 4835389 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-377 3130 chrX 4931325 4931381 chrX 4931439 4931482 20 110 35.5 37.0 36.2 0.5 157 chrX 4931325 intron CG44774 - chrX 4931404 intron CG44774 - chrX 4931482 intron CG44774 - chrX_20_4930001 chrX_4930001 RAL-377 3131 chrX 4943899 4943927 chrX 4944016 4944044 6 117 3.0 5.5 4.2 1.2 145 chrX 4943899 intron Ptp4E + chrX 4943972 intron Ptp4E + chrX 4944044 intron Ptp4E + chrX_6_4940001 chrX_4940001 RAL-377 3132 chrX 4990025 4990070 chrX 4997257 4997304 roo 15 7232 5.0 2.5 3.8 3.1 7279 chrX 4990025 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997304 intron CR44833 - chrX_15_4990001 chrX_4990001 RAL-377 3133 chrX 5096262 5096305 chrX 5103847 5103890 springer 8 7582 1.0 5.0 3.0 2.0 7628 chrX 5096262 intron,intron CG15465 +,rg + chrX 5100076 intron,intron CG15465 +,rg + chrX 5103890 intron,intron CG15465 +,rg + chrX_8_5100001 chrX_5100001 RAL-377 3134 chrX 5122799 5122843 chrX 5123048 5123092 4 249 1.0 2.0 1.5 1.6 293 chrX 5122799 intron,intron CG15465 +,rg + chrX 5122946 intron,intron CG15465 +,rg + chrX 5123092 intron,intron CG15465 +,rg + chrX_4_5120001 chrX_5120001 RAL-377 3135 chrX 5134793 5134830 chrX 5134906 5134947 9 120 4.0 6.0 5.0 1.5 154 chrX 5134793 intron,intron CG15465 +,rg + chrX 5134870 intron,intron CG15465 +,rg + chrX 5134947 intron,intron CG15465 +,rg + chrX_9_5130001 chrX_5130001 RAL-377 3136 chrX 5329426 5329471 chrX 5329543 5329568 8 114 3.5 1.0 2.2 2.5 142 chrX 5329426 intergenic CG3309 -,XRCC1 + chrX 5329497 intergenic CG3309 -,XRCC1 + chrX 5329568 intergenic CG3309 -,XRCC1 + chrX_8_5325001 chrX_5325001 RAL-377 3137 chrX 5441980 5442009 chrX 5442108 5442134 4 126 3.0 2.5 2.8 1.1 154 chrX 5441980 intergenic not near genes chrX 5442057 intergenic not near genes chrX 5442134 intergenic not near genes chrX_4_5440001 chrX_5440001 RAL-377 3138 chrX 5442011 5442017 chrX 5442107 5442145 5 121 2.0 2.5 2.2 1.6 134 chrX 5442011 intergenic not near genes chrX 5442078 intergenic not near genes chrX 5442145 intergenic not near genes chrX_5_5440001 chrX_5440001 RAL-377 3139 chrX 5456573 5456614 chrX 5456707 5456737 15 135 1.5 3.0 2.2 4.7 164 chrX 5456573 intron SPR + chrX 5456655 intron SPR + chrX 5456737 intron SPR + chrX_15_5455001 chrX_5455001 RAL-377 3140 chrX 5473570 5473604 chrX 5473666 5473700 16 95 4.5 3.5 4.0 3.2 130 chrX 5473570 intron SPR + chrX 5473635 intron SPR + chrX 5473700 intron SPR + chrX_16_5470001 chrX_5470001 RAL-377 3141 chrX 5512019 5512064 chrX 5512140 5512189 8 124 4.0 3.0 3.5 1.8 170 chrX 5512019 intergenic not near genes chrX 5512104 intergenic not near genes chrX 5512189 intergenic not near genes chrX_8_5510001 chrX_5510001 RAL-377 3142 chrX 5524827 5524853 chrX 5528706 5528731 412 4 3881 3.0 1.5 2.2 1.2 3904 chrX 5524827 intergenic snoRNA:Psi28S-3342 - chrX 5526779 intergenic not near genes chrX 5528731 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-377 3143 chrX 5796909 5796939 chrX 5797001 5797018 6 94 2.0 2.5 2.2 1.9 109 chrX 5796909 intergenic not near genes chrX 5796964 intergenic not near genes chrX 5797018 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-377 3144 chrX 5883792 5883841 chrX 5884053 5884102 pogo 9 259 5.5 3.5 4.5 1.6 310 chrX 5883792 intron CR45668 - chrX 5883947 intron CR45668 - chrX 5884102 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-377 3145 chrX 5884155 5884188 chrX 5884416 5884449 pogo 6 261 3.5 6.0 4.8 1.0 294 chrX 5884155 intron CR45668 - chrX 5884302 intron CR45668 - chrX 5884449 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-377 3146 chrX 6037529 6037577 chrX 6037732 6037780 22 203 4.0 4.0 4.0 4.4 251 chrX 6037529 intron rux - chrX 6037654 intron rux - chrX 6037780 5` UTR rux - chrX_22_6035001 chrX_6035001 RAL-377 3147 chrX 6041081 6041118 chrX 6041183 6041220 6 101 0.0 6.5 3.2 1.4 139 chrX 6041081 intron CG5937 + chrX 6041150 intron CG5937 + chrX 6041220 intron CG5937 + chrX_6_6040001 chrX_6040001 RAL-377 3148 chrX 6118685 6118726 chrX 6118787 6118828 18 102 6.5 4.0 5.2 2.9 143 chrX 6118685 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118828 intron Ca-alpha1T - chrX_18_6115001 chrX_6115001 RAL-377 3149 chrX 6171568 6171610 chrX 6179018 6179063 Quasimodo 14 7451 6.0 3.0 4.5 2.5 7495 chrX 6171568 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179063 intron Ca-alpha1T - chrX_14_6175001 chrX_6175001 RAL-377 3150 chrX 6198407 6198414 chrX 6202238 6202245 4 3831 2.5 9.0 5.8 0.6 3838 chrX 6198407 exon CG32751 - chrX 6200326 3` UTR vanin-like - chrX 6202245 exon vanin-like - chrX_4_6200001 chrX_6200001 RAL-377 3151 chrX 6215519 6215530 chrX 6215615 6215621 5 97 5.5 1.0 3.2 1.2 102 chrX 6215519 intergenic not near genes chrX 6215570 intergenic not near genes chrX 6215621 intergenic not near genes chrX_5_6215001 chrX_6215001 RAL-377 3152 chrX 6335224 6335237 chrX 6337754 6337767 Tirant 6 2530 0.0 8.5 4.2 1.2 2543 chrX 6335224 intergenic not near genes chrX 6336496 intergenic not near genes chrX 6337767 5` UTR CG3842 + chrX_6_6335001 chrX_6335001 RAL-377 3153 chrX 6392874 6392896 chrX 6397659 6397681 Doc 10 4784 4.0 6.0 5.0 1.7 4807 chrX 6392874 intergenic not near genes chrX 6395278 intergenic not near genes chrX 6397681 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-377 3154 chrX 6445323 6445330 chrX 6451101 6451108 297 5 5778 4.5 6.5 5.5 0.8 5785 chrX 6445323 intron CG42340 - chrX 6448216 intron CG42340 - chrX 6451108 intron CG42340 - chrX_5_6445001 chrX_6445001 RAL-377 3155 chrX 6562796 6562847 chrX 6571298 6571349 Tirant 11 8499 2.5 3.0 2.8 2.9 8553 chrX 6562796 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571349 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-377 3156 chrX 6591835 6591857 chrX 6591940 6591962 6 105 5.0 0.0 2.5 1.7 127 chrX 6591835 intron Pat1 + chrX 6591898 intron Pat1 + chrX 6591962 intron Pat1 + chrX_6_6590001 chrX_6590001 RAL-377 3157 chrX 6605462 6605506 chrX 6608504 6608548 Burdock 14 3042 4.5 6.0 5.2 2.3 3086 chrX 6605462 intron pigs + chrX 6607005 intron pigs + chrX 6608548 intron pigs + chrX_14_6605001 chrX_6605001 RAL-377 3158 chrX 6629765 6629793 chrX 6629872 6629900 4 106 1.5 2.5 2.0 1.3 135 chrX 6629765 intron pigs + chrX 6629832 intron pigs + chrX 6629900 intron pigs + chrX_4_6625001 chrX_6625001 RAL-377 3159 chrX 6653005 6653014 chrX 6653101 6653110 4 96 8.0 5.5 6.8 0.5 105 chrX 6653005 3` UTR pigs + chrX 6653058 intergenic pigs +,CG3226 - chrX 6653110 intergenic CG3226 -,pigs + chrX_4_6650001 chrX_6650001 RAL-377 3160 chrX 6871171 6871219 chrX 6871281 6871329 17 109 6.5 4.5 5.5 2.6 158 chrX 6871171 intron CG43736 + chrX 6871250 intron CG43736 + chrX 6871329 intron CG43736 + chrX_17_6870001 chrX_6870001 RAL-377 3161 chrX 6897572 6897583 chrX 7243777 7243799 5 346214 1.5 2.5 2.0 1.7 346227 chrX 6897572 intergenic not near genes chrX 7070686 exon CG4607 + chrX 7243799 intron CR44357 - chrX_5_7070001 chrX_7070001 RAL-377 3162 chrX 6897668 6897676 chrX 6897798 6897806 5 130 1.0 0.0 0.5 3.3 138 chrX 6897668 intergenic not near genes chrX 6897737 intergenic not near genes chrX 6897806 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-377 3163 chrX 6989506 6989522 chrX 6989601 6989629 9 104 5.0 4.0 4.5 1.6 123 chrX 6989506 intron ogre - chrX 6989568 intron ogre - chrX 6989629 intron ogre - chrX_9_6985001 chrX_6985001 RAL-377 3164 chrX 7023585 7023628 chrX 7030992 7031022 Tabor 10 7408 3.5 2.5 3.0 2.5 7437 chrX 7023585 intron CG12541 - chrX 7027304 intron CG12541 - chrX 7031022 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-377 3165 chrX 7061348 7061398 chrX 7061462 7061511 16 114 2.5 3.5 3.0 4.0 163 chrX 7061348 intron CG12541 - chrX 7061430 intron CG12541 - chrX 7061511 intron CG12541 - chrX_16_7060001 chrX_7060001 RAL-377 3166 chrX 7072816 7072864 chrX 7073383 7073425 12 563 5.5 1.5 3.5 2.7 609 chrX 7072816 intergenic CG4607 + chrX 7073120 intergenic CG4607 + chrX 7073425 intergenic not near genes chrX_12_7070001 chrX_7070001 RAL-377 3167 chrX 7125226 7125263 chrX 7134405 7134442 roo 8 9179 0.5 3.0 1.8 2.9 9216 chrX 7125226 intergenic not near genes chrX 7129834 intergenic not near genes chrX 7134442 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-377 3168 chrX 7294498 7294542 chrX 7294614 7294655 10 110 2.0 3.5 2.8 2.6 157 chrX 7294498 intron,intron CR44357 -,CG1677 - chrX 7294576 intron,intron CR44357 -,CG1677 - chrX 7294655 intron,intron CR44357 -,CG1677 - chrX_10_7290001 chrX_7290001 RAL-377 3169 chrX 7367687 7367698 chrX 7367785 7367796 4 96 0.0 0.0 0.0 4.0 109 chrX 7367687 intron,intron CR44357 -,CG1677 - chrX 7367742 intron,intron CR44357 -,CG1677 - chrX 7367796 intron,intron CR44357 -,CG1677 - chrX_4_7365001 chrX_7365001 RAL-377 3170 chrX 7475050 7475078 chrX 7475141 7475191 8 107 2.5 3.0 2.8 2.1 141 chrX 7475050 intergenic not near genes chrX 7475120 intergenic not near genes chrX 7475191 intergenic not near genes chrX_8_7475001 chrX_7475001 RAL-377 3171 chrX 7702890 7702927 chrX 7703349 7703386 jockey 16 458 6.0 5.5 5.8 2.4 496 chrX 7702890 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703386 intron CHES-1-like - chrX_16_7700001 chrX_7700001 RAL-377 3172 chrX 7720540 7720576 chrX 7720634 7720653 4 94 3.0 2.5 2.8 1.1 113 chrX 7720540 intergenic not near genes chrX 7720596 intergenic not near genes chrX 7720653 intergenic not near genes chrX_4_7720001 chrX_7720001 RAL-377 3173 chrX 7793219 7793230 chrX 7793318 7793319 6 97 9.5 2.0 5.8 0.9 100 chrX 7793219 intergenic not near genes chrX 7793269 intergenic not near genes chrX 7793319 intergenic not near genes chrX_6_7790001 chrX_7790001 RAL-377 3174 chrX 7793232 7793235 chrX 7793316 7793326 4 91 8.5 2.0 5.2 0.6 94 chrX 7793232 intergenic not near genes chrX 7793279 intergenic not near genes chrX 7793326 intergenic not near genes chrX_4_7790001 chrX_7790001 RAL-377 3175 chrX 7793238 7793262 chrX 7793312 7793361 8 96 6.0 1.5 3.8 1.7 123 chrX 7793238 intergenic not near genes chrX 7793300 intergenic not near genes chrX 7793361 intergenic not near genes chrX_8_7790001 chrX_7790001 RAL-377 3176 chrX 7832420 7832463 chrX 7832528 7832572 14 108 7.0 5.0 6.0 2.0 152 chrX 7832420 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832572 intron CG1402 + chrX_14_7830001 chrX_7830001 RAL-377 3177 chrX 7845707 7845756 chrX 7847214 7847267 hopper2 12 1510 3.0 5.5 4.2 2.3 1560 chrX 7845707 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847267 intergenic not near genes chrX_12_7845001 chrX_7845001 RAL-377 3178 chrX 7931588 7931601 chrX 7931693 7931706 4 105 9.0 5.0 7.0 0.5 118 chrX 7931588 intergenic CG10778 -,CG10777 - chrX 7931647 intergenic CG10778 -,CG10777 - chrX 7931706 intergenic CG10778 -,CG10777 - chrX_4_7930001 chrX_7930001 RAL-377 3179 chrX 8031406 8031450 chrX 8035735 8035779 Juan 7 4329 5.5 1.0 3.2 1.7 4373 chrX 8031406 intergenic not near genes chrX 8033592 intergenic not near genes chrX 8035779 3` UTR CG2233 - chrX_7_8030001 chrX_8030001 RAL-377 3180 chrX 8063720 8063766 chrX 8063839 8063878 7 116 3.5 3.0 3.2 1.7 158 chrX 8063720 intron mys + chrX 8063799 intron mys + chrX 8063878 5` UTR mys + chrX_7_8060001 chrX_8060001 RAL-377 3181 chrX 8364834 8364875 chrX 8365251 8365292 BS 15 417 3.0 5.0 4.0 3.0 458 chrX 8364834 intron nAChRalpha3 - chrX 8365063 intron nAChRalpha3 - chrX 8365292 intron nAChRalpha3 - chrX_15_8365001 chrX_8365001 RAL-377 3182 chrX 8506013 8506060 chrX 8506111 8506158 12 96 7.5 5.5 6.5 1.6 145 chrX 8506013 intron CG33181 + chrX 8506086 intron CG33181 + chrX 8506158 intron CG33181 + chrX_12_8505001 chrX_8505001 RAL-377 3183 chrX 8506508 8506551 chrX 8506736 8506779 8 228 3.0 2.0 2.5 2.3 271 chrX 8506508 intron CG33181 + chrX 8506644 intron CG33181 + chrX 8506779 intron CG33181 + chrX_8_8505001 chrX_8505001 RAL-377 3184 chrX 8509098 8509147 chrX 8509195 8509244 10 97 4.0 3.0 3.5 2.2 146 chrX 8509098 intron CG33181 + chrX 8509171 intron CG33181 + chrX 8509244 intron CG33181 + chrX_10_8505001 chrX_8505001 RAL-377 3185 chrX 8544133 8544164 chrX 8544232 8544263 8 99 1.5 4.5 3.0 2.0 130 chrX 8544133 intron Nrg + chrX 8544198 intron Nrg + chrX 8544263 intron Nrg + chrX_8_8540001 chrX_8540001 RAL-377 3186 chrX 8658350 8658360 chrX 8658503 8658540 7 174 3.0 5.5 4.2 1.3 190 chrX 8658350 intergenic not near genes chrX 8658445 intergenic not near genes chrX 8658540 intergenic not near genes chrX_7_8655001 chrX_8655001 RAL-377 3187 chrX 8727415 8727424 chrX 8727512 8727521 4 97 2.0 5.5 3.8 0.8 106 chrX 8727415 intergenic not near genes chrX 8727468 intergenic not near genes chrX 8727521 intergenic not near genes chrX_4_8725001 chrX_8725001 RAL-377 3188 chrX 8894979 8894999 chrX 8895083 8895105 13 106 5.0 5.0 5.0 2.2 126 chrX 8894979 intron Moe - chrX 8895042 intron Moe - chrX 8895105 intron Moe - chrX_13_8895001 chrX_8895001 RAL-377 3189 chrX 8922316 8922359 chrX 8922761 8922773 jockey 12 438 1.0 2.5 1.8 4.3 457 chrX 8922316 intron rdgA + chrX 8922544 intron rdgA + chrX 8922773 intron rdgA + chrX_12_8920001 chrX_8920001 RAL-377 3190 chrX 8948742 8948792 chrX 8956272 8956322 roo 8 7528 1.0 6.0 3.5 1.8 7580 chrX 8948742 intron rdgA + chrX 8952532 intron rdgA + chrX 8956322 intron rdgA + chrX_8_8950001 chrX_8950001 RAL-377 3191 chrX 9062706 9062752 chrX 9062804 9062850 20 98 2.5 0.0 1.2 9.1 144 chrX 9062706 intron CG15365 - chrX 9062778 intron CG15365 - chrX 9062850 intron CG15365 - chrX_20_9060001 chrX_9060001 RAL-377 3192 chrX 9129475 9129501 chrX 9129565 9129606 7 97 1.0 4.5 2.8 1.8 131 chrX 9129475 intron fend - chrX 9129540 intron fend - chrX 9129606 intron fend - chrX_7_9125001 chrX_9125001 RAL-377 3193 chrX 9152056 9152096 chrX 9152159 9152199 11 103 3.5 1.0 2.2 3.4 143 chrX 9152056 intergenic dalao +,His3.3B - chrX 9152128 intergenic dalao +,His3.3B - chrX 9152199 intergenic dalao +,His3.3B - chrX_11_9150001 chrX_9150001 RAL-377 3194 chrX 9408009 9408049 chrX 9408375 9408411 5 359 7.0 3.5 5.2 0.8 402 chrX 9408009 intron mgl - chrX 9408210 intron mgl - chrX 9408411 intron mgl - chrX_5_9405001 chrX_9405001 RAL-377 3195 chrX 9508121 9508160 chrX 9509657 9509698 jockey 14 1535 3.5 1.0 2.2 4.4 1577 chrX 9508121 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509698 intron CG32700 - chrX_14_9505001 chrX_9505001 RAL-377 3196 chrX 9531635 9531672 chrX 9531735 9531772 7 99 5.0 0.0 2.5 2.0 137 chrX 9531635 intron CG32700 - chrX 9531704 intron CG32700 - chrX 9531772 intron CG32700 - chrX_7_9530001 chrX_9530001 RAL-377 3197 chrX 9575769 9575820 chrX 9576113 9576164 mdg3 9 342 4.5 4.5 4.5 1.6 395 chrX 9575769 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576164 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-377 3198 chrX 9599168 9599202 chrX 9599250 9599295 7 90 2.5 2.0 2.2 2.2 127 chrX 9599168 intergenic not near genes chrX 9599232 intergenic not near genes chrX 9599295 intergenic not near genes chrX_7_9595001 chrX_9595001 RAL-377 3199 chrX 9758038 9758079 chrX 9758143 9758184 10 105 3.5 0.0 1.8 3.6 146 chrX 9758038 intergenic not near genes chrX 9758111 intergenic not near genes chrX 9758184 intergenic not near genes chrX_10_9755001 chrX_9755001 RAL-377 3200 chrX 9791856 9791892 chrX 9791973 9792009 6 117 2.5 2.0 2.2 1.9 153 chrX 9791856 intron CG32698 + chrX 9791932 intron CG32698 + chrX 9792009 intron CG32698 + chrX_6_9790001 chrX_9790001 RAL-377 3201 chrX 7995775 7995775 chrX 9845361 9845361 4 1849586 7.0 13.0 10.0 0.4 1849586 chrX 7995775 5` UTR Tbh + chrX 8920568 intron rdgA + chrX 9845361 intron CG32698 + chrX_4_8920001 chrX_8920001 RAL-377 3202 chrX 10138200 10138248 chrX 10145724 10145772 412 6 7524 3.5 0.0 1.8 2.1 7572 chrX 10138200 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145772 intron,intron RhoU +,CR44894 - chrX_6_10140001 chrX_10140001 RAL-377 3203 chrX 10187008 10187051 chrX 10187261 10187308 11 258 1.0 4.5 2.8 2.9 300 chrX 10187008 intron,intron CR44894 -,CG43902 + chrX 10187158 intron,intron CR44894 -,CG43902 + chrX 10187308 intron,intron CR44894 -,CG43902 + chrX_11_10185001 chrX_10185001 RAL-377 3204 chrX 10216843 10216849 chrX 10216940 10216950 4 100 5.5 10.5 8.0 0.4 107 chrX 10216843 3` UTR l(1)G0230 + chrX 10216896 3` UTR l(1)G0230 + chrX 10216950 3` UTR l(1)G0230 + chrX_4_10215001 chrX_10215001 RAL-377 3205 chrX 10267296 10267334 chrX 10276466 10276504 roo 11 9170 0.0 5.5 2.8 2.9 9208 chrX 10267296 3` UTR alpha-Man-I - chrX 10271900 intron alpha-Man-I - chrX 10276504 3` UTR alpha-Man-I - chrX_11_10270001 chrX_10270001 RAL-377 3206 chrX 10306044 10306074 chrX 10306145 10306160 6 98 7.5 0.0 3.8 1.2 116 chrX 10306044 intron alpha-Man-I - chrX 10306102 intron alpha-Man-I - chrX 10306160 intron alpha-Man-I - chrX_6_10305001 chrX_10305001 RAL-377 3207 chrX 10317536 10317582 chrX 10317634 10317680 13 98 0.0 3.0 1.5 5.2 144 chrX 10317536 intron alpha-Man-I - chrX 10317608 intron alpha-Man-I - chrX 10317680 intron alpha-Man-I - chrX_13_10315001 chrX_10315001 RAL-377 3208 chrX 10348780 10348815 chrX 10356365 10356400 springer 11 7584 5.0 2.0 3.5 2.4 7620 chrX 10348780 intergenic snoRNA:U3:9B + chrX 10352590 intergenic not near genes chrX 10356400 intergenic l(1)G0289 - chrX_11_10350001 chrX_10350001 RAL-377 3209 chrX 10361691 10361741 chrX 10361808 10361858 11 117 1.5 2.5 2.0 3.7 167 chrX 10361691 intron l(1)G0289 - chrX 10361774 intron l(1)G0289 - chrX 10361858 intron l(1)G0289 - chrX_11_10360001 chrX_10360001 RAL-377 3210 chrX 10440691 10440706 chrX 10440780 10440805 4 96 7.0 5.5 6.2 0.6 114 chrX 10440691 intron CG32683 - chrX 10440748 intron CG32683 - chrX 10440805 intron CG32683 - chrX_4_10440001 chrX_10440001 RAL-377 3211 chrX 10472294 10472336 chrX 10472396 10472413 11 108 3.5 3.0 3.2 2.6 119 chrX 10472294 intron nocte - chrX 10472354 intron nocte - chrX 10472413 intron nocte - chrX_11_10470001 chrX_10470001 RAL-377 3212 chrX 10525048 10525066 chrX 10532137 10532155 297 5 7085 7.0 5.0 6.0 0.7 7107 chrX 10525048 intron spri - chrX 10528602 intron spri - chrX 10532155 intron spri - chrX_5_10525001 chrX_10525001 RAL-377 3213 chrX 10532484 10532528 chrX 10532583 10532619 15 96 4.0 5.0 4.5 2.7 135 chrX 10532484 intron spri - chrX 10532552 intron spri - chrX 10532619 intron spri - chrX_15_10530001 chrX_10530001 RAL-377 3214 chrX 10550856 10550879 chrX 10552317 10552364 hobo 7 1482 2.0 1.0 1.5 2.8 1508 chrX 10550856 intron spri - chrX 10551610 intron spri - chrX 10552364 intron spri - chrX_7_10550001 chrX_10550001 RAL-377 3215 chrX 10590771 10590807 chrX 10590867 10590903 12 95 5.5 3.5 4.5 2.2 132 chrX 10590771 intergenic Hmr - chrX 10590837 intergenic Hmr - chrX 10590903 intergenic Hmr - chrX_12_10590001 chrX_10590001 RAL-377 3216 chrX 10651614 10651646 chrX 10651750 10651782 10 135 0.0 8.0 4.0 2.0 168 chrX 10651614 intron X11Lbeta + chrX 10651698 intron X11Lbeta + chrX 10651782 intron X11Lbeta + chrX_10_10650001 chrX_10650001 RAL-377 3217 chrX 10686029 10686078 chrX 10691186 10691235 roo 9 5157 4.5 4.5 4.5 1.6 5206 chrX 10686029 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691235 intron X11Lbeta + chrX_9_10685001 chrX_10685001 RAL-377 3218 chrX 10803015 10803021 chrX 10803120 10803121 4 104 7.0 3.5 5.2 0.6 106 chrX 10803015 intron Imp - chrX 10803068 intron Imp - chrX 10803121 intron Imp - chrX_4_10800001 chrX_10800001 RAL-377 3219 chrX 10803022 10803047 chrX 10803118 10803152 9 102 5.5 3.5 4.5 1.6 130 chrX 10803022 intron Imp - chrX 10803087 intron Imp - chrX 10803152 intron Imp - chrX_9_10800001 chrX_10800001 RAL-377 3220 chrX 11036337 11036369 chrX 11036467 11036503 5 128 2.5 1.5 2.0 1.7 166 chrX 11036337 intron CG42339 - chrX 11036420 intron CG42339 - chrX 11036503 intron CG42339 - chrX_5_11035001 chrX_11035001 RAL-377 3221 chrX 11062427 11062472 chrX 11062541 11062586 16 115 2.0 2.0 2.0 5.3 159 chrX 11062427 exon CG1537 - chrX 11062506 intron CG1537 - chrX 11062586 intron CG1537 - chrX_16_11060001 chrX_11060001 RAL-377 3222 chrX 11095980 11096023 chrX 11103102 11103145 HMS-Beagle 11 7122 5.0 7.5 6.2 1.5 7165 chrX 11095980 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103145 intron CG42249 + chrX_11_11095001 chrX_11095001 RAL-377 3223 chrX 11109417 11109417 chrX 12946233 12946235 10 1836817 19.0 24.5 21.8 0.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_10_12025001 chrX_12025001 RAL-377 3224 chrX 11165887 11165900 chrX 11166239 11166252 6 352 2.5 6.0 4.2 1.2 365 chrX 11165887 intergenic not near genes chrX 11166070 intergenic not near genes chrX 11166252 intergenic not near genes chrX_6_11165001 chrX_11165001 RAL-377 3225 chrX 11184228 11184280 chrX 11189327 11189376 flea 8 5097 2.0 3.5 2.8 2.1 5148 chrX 11184228 intergenic not near genes chrX 11186802 intergenic not near genes chrX 11189376 intergenic not near genes chrX_8_11185001 chrX_11185001 RAL-377 3226 chrX 11205272 11205319 chrX 11205368 11205415 13 96 3.0 2.0 2.5 3.7 143 chrX 11205272 intergenic not near genes chrX 11205344 intergenic not near genes chrX 11205415 intergenic not near genes chrX_13_11205001 chrX_11205001 RAL-377 3227 chrX 11312053 11312080 chrX 11319426 11319453 Stalker2 4 7373 1.5 2.0 1.8 1.4 7400 chrX 11312053 intergenic not near genes chrX 11315753 intergenic not near genes chrX 11319453 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-377 3228 chrX 11379750 11379790 chrX 11379915 11379955 11 164 2.0 4.5 3.2 2.6 205 chrX 11379750 intron dlg1 + chrX 11379852 intron dlg1 + chrX 11379955 intron dlg1 + chrX_11_11375001 chrX_11375001 RAL-377 3229 chrX 11422640 11422688 chrX 11422740 11422775 10 98 4.0 0.5 2.2 3.1 135 chrX 11422640 intergenic Gs2 + chrX 11422708 intergenic Gs2 + chrX 11422775 intergenic Gs2 + chrX_10_11420001 chrX_11420001 RAL-377 3230 chrX 11431566 11431623 chrX 11431677 11431730 5 108 0.0 4.0 2.0 1.7 164 chrX 11431566 3` UTR Evi5 - chrX 11431648 3` UTR Evi5 - chrX 11431730 3` UTR Evi5 - chrX_5_11430001 chrX_11430001 RAL-377 3231 chrX 11535019 11535046 chrX 11541509 11541536 Burdock 4 6489 6.0 3.5 4.8 0.7 6517 chrX 11535019 intron Drak + chrX 11538278 intron Drak + chrX 11541536 intron Drak + chrX_4_11535001 chrX_11535001 RAL-377 3232 chrX 11633408 11633446 chrX 11640482 11640520 297 7 7074 4.5 5.0 4.8 1.2 7112 chrX 11633408 intron Ptp10D + chrX 11636964 intron Ptp10D + chrX 11640520 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-377 3233 chrX 11645090 11645134 chrX 11648279 11648324 NOF 6 3189 4.0 4.0 4.0 1.2 3234 chrX 11645090 intron Ptp10D + chrX 11646707 intron Ptp10D + chrX 11648324 intron Ptp10D + chrX_6_11645001 chrX_11645001 RAL-377 3234 chrX 11804659 11804684 chrX 11804782 11804808 6 124 3.5 3.5 3.5 1.3 149 chrX 11804659 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804808 intron Hsc70-3 - chrX_6_11800001 chrX_11800001 RAL-377 3235 chrX 11917356 11917358 chrX 11917413 11917455 4 83 3.0 4.5 3.8 0.8 99 chrX 11917356 intergenic pot -,CR32661 - chrX 11917406 intergenic pot -,CR32661 - chrX 11917455 intergenic pot -,CR32661 - chrX_4_11915001 chrX_11915001 RAL-377 3236 chrX 11922345 11922378 chrX 11922501 11922534 7 156 4.0 4.5 4.2 1.3 189 chrX 11922345 exon Sclp - chrX 11922440 intron Sclp - chrX 11922534 intron Sclp - chrX_7_11920001 chrX_11920001 RAL-377 3237 chrX 12032133 12032175 chrX 12033932 12033974 16 1800 35.5 20.0 27.8 0.6 1841 chrX 12032133 intergenic Cyp318a1 + chrX 12033054 exon Cyp318a1 + chrX 12033974 intron Cyp318a1 + chrX_16_12030001 chrX_12030001 RAL-377 3238 chrX 12038079 12038114 chrX 12038293 12038328 15 213 4.5 7.5 6.0 2.1 249 chrX 12038079 intergenic not near genes chrX 12038204 intergenic not near genes chrX 12038328 intergenic not near genes chrX_15_12035001 chrX_12035001 RAL-377 3239 chrX 12094016 12094061 chrX 12094128 12094172 9 108 3.0 4.5 3.8 1.9 156 chrX 12094016 intron,intron CR43960 +,Ten-a + chrX 12094094 intron,intron CR43960 +,Ten-a + chrX 12094172 intron,intron CR43960 +,Ten-a + chrX_9_12090001 chrX_12090001 RAL-377 3240 chrX 12246944 12246990 chrX 12247060 12247106 8 116 1.5 2.5 2.0 2.7 162 chrX 12246944 intron Ten-a + chrX 12247025 intron Ten-a + chrX 12247106 intron Ten-a + chrX_8_12245001 chrX_12245001 RAL-377 3241 chrX 12350761 12350794 chrX 12350862 12350895 12 100 1.5 0.0 0.8 6.7 134 chrX 12350761 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350895 intergenic not near genes chrX_12_12350001 chrX_12350001 RAL-377 3242 chrX 12440384 12440401 chrX 12440486 12440503 8 102 0.0 8.5 4.2 1.5 119 chrX 12440384 intron Pkcdelta + chrX 12440444 intron Pkcdelta + chrX 12440503 intron Pkcdelta + chrX_8_12440001 chrX_12440001 RAL-377 3243 chrX 12442074 12442101 chrX 12442176 12442187 9 100 3.0 0.0 1.5 3.6 113 chrX 12442074 intron Pkcdelta + chrX 12442130 intron Pkcdelta + chrX 12442187 intron Pkcdelta + chrX_9_12440001 chrX_12440001 RAL-377 3244 chrX 12469885 12469900 chrX 12470007 12470022 6 122 5.0 4.5 4.8 1.0 137 chrX 12469885 intron CG42258 + chrX 12469954 intron CG42258 + chrX 12470022 intron CG42258 + chrX_6_12465001 chrX_12465001 RAL-377 3245 chrX 12492985 12492989 chrX 13057298 13057302 4 564313 2.5 9.0 5.8 0.6 564317 chrX 12492985 intergenic Lsp1alpha + chrX 12775144 3` UTR CG32647 - chrX 13057302 intron rad + chrX_4_12775001 chrX_12775001 RAL-377 3246 chrX 12533770 12533818 chrX 12533867 12533914 5 97 0.5 1.0 0.8 2.8 144 chrX 12533770 intron CG43921 - chrX 12533842 intron CG43921 - chrX 12533914 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-377 3247 chrX 12535959 12536005 chrX 12536059 12536109 6 103 0.0 5.5 2.8 1.6 150 chrX 12535959 intron CG43921 - chrX 12536034 intron CG43921 - chrX 12536109 intron CG43921 - chrX_6_12535001 chrX_12535001 RAL-377 3248 chrX 12541743 12541775 chrX 12541988 12542020 10 242 7.0 4.0 5.5 1.5 277 chrX 12541743 intron CG43921 - chrX 12541882 intron CG43921 - chrX 12542020 intron CG43921 - chrX_10_12540001 chrX_12540001 RAL-377 3249 chrX 12541778 12541788 chrX 12541984 12542032 4 235 3.5 4.0 3.8 0.8 254 chrX 12541778 intron CG43921 - chrX 12541905 intron CG43921 - chrX 12542032 intron CG43921 - chrX_4_12540001 chrX_12540001 RAL-377 3250 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 5 2701135 14.0 17.5 15.8 0.3 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_5_11195001 chrX_11195001 RAL-377 3251 chrX 12557141 12557163 chrX 12557234 12557234 6 91 4.5 6.0 5.2 1.0 93 chrX 12557141 intron CG43921 - chrX 12557188 intron CG43921 - chrX 12557234 intron CG43921 - chrX_6_12555001 chrX_12555001 RAL-377 3252 chrX 12646879 12646892 chrX 12647003 12647017 4 125 10.0 7.0 8.5 0.4 138 chrX 12646879 intron Tomosyn + chrX 12646948 intron Tomosyn + chrX 12647017 intron Tomosyn + chrX_4_12645001 chrX_12645001 RAL-377 3253 chrX 12785407 12785460 chrX 12785504 12785557 8 97 3.5 3.5 3.5 1.8 150 chrX 12785407 intergenic Pde9 -,CG32647 - chrX 12785482 intergenic Pde9 - chrX 12785557 intergenic Pde9 - chrX_8_12785001 chrX_12785001 RAL-377 3254 chrX 12823188 12823221 chrX 12823284 12823318 6 96 3.0 2.0 2.5 1.7 130 chrX 12823188 intron Pde9 - chrX 12823253 intron Pde9 - chrX 12823318 intron Pde9 - chrX_6_12820001 chrX_12820001 RAL-377 3255 chrX 12930582 12930608 chrX 12937718 12937744 HMS-Beagle 11 7136 4.0 6.0 5.0 1.8 7162 chrX 12930582 intron fne + chrX 12934163 intron fne + chrX 12937744 intron fne + chrX_11_12930001 chrX_12930001 RAL-377 3256 chrX 11109417 11109417 chrX 12946234 12946234 6 1836817 19.0 24.5 21.8 0.3 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-377 3257 chrX 12946234 12946234 chrX 18572525 18572526 5 5626291 21.0 18.0 19.5 0.2 5626292 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_5_15755001 chrX_15755001 RAL-377 3258 chrX 11109417 11109417 chrX 12946235 12946235 7 1836818 19.0 24.5 21.8 0.3 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_7_12025001 chrX_12025001 RAL-377 3259 chrX 13061332 13061359 chrX 13061463 13061488 4 130 2.5 2.5 2.5 1.1 156 chrX 13061332 intron rad + chrX 13061410 intron rad + chrX 13061488 intron rad + chrX_4_13060001 chrX_13060001 RAL-377 3260 chrX 13146580 13146627 chrX 13146688 13146735 17 108 2.5 4.5 3.5 3.8 155 chrX 13146580 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146735 intron CG32645 + chrX_17_13145001 chrX_13145001 RAL-377 3261 chrX 13172330 13172381 chrX 13172426 13172475 14 95 3.5 4.0 3.8 2.9 145 chrX 13172330 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172475 intron CG34411 - chrX_14_13170001 chrX_13170001 RAL-377 3262 chrX 13272166 13272181 chrX 13272257 13272277 10 95 8.0 6.5 7.2 1.2 111 chrX 13272166 intron HDAC4 - chrX 13272222 intron HDAC4 - chrX 13272277 intron HDAC4 - chrX_10_13270001 chrX_13270001 RAL-377 3263 chrX 13329305 13329360 chrX 13329419 13329466 13 113 0.0 1.0 0.5 8.7 161 chrX 13329305 intergenic IP3K2 + chrX 13329386 intergenic IP3K2 +,Jafrac1 + chrX 13329466 intergenic IP3K2 +,Jafrac1 + chrX_13_13325001 chrX_13325001 RAL-377 3264 chrX 13374826 13374870 chrX 13374916 13374969 9 97 1.0 1.0 1.0 4.5 143 chrX 13374826 intron CG1640 + chrX 13374898 intron CG1640 + chrX 13374969 intron CG1640 + chrX_9_13370001 chrX_13370001 RAL-377 3265 chrX 13401466 13401500 chrX 13401838 13401872 jockey 9 372 4.0 2.0 3.0 2.2 406 chrX 13401466 intergenic CG1673 +,CG12725 - chrX 13401669 intergenic CG12725 -,CG1673 + chrX 13401872 3` UTR CG12725 - chrX_9_13400001 chrX_13400001 RAL-377 3266 chrX 13429445 13429491 chrX 13430614 13430660 jockey 11 1169 5.5 3.5 4.5 2.0 1215 chrX 13429445 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430660 intergenic not near genes chrX_11_13430001 chrX_13430001 RAL-377 3267 chrX 13463635 13463648 chrX 13469222 13469244 mdg3 6 5595 8.0 3.0 5.5 0.9 5609 chrX 13463635 intron Neto + chrX 13466440 intron Neto + chrX 13469244 intron Neto + chrX_6_13465001 chrX_13465001 RAL-377 3268 chrX 13463649 13463665 chrX 13469221 13469262 mdg3 7 5593 5.5 3.0 4.2 1.3 5613 chrX 13463649 intron Neto + chrX 13466456 intron Neto + chrX 13469262 intron Neto + chrX_7_13465001 chrX_13465001 RAL-377 3269 chrX 13593204 13593228 chrX 13593304 13593328 8 100 2.0 0.5 1.2 3.6 124 chrX 13593204 3` UTR Tango13 + chrX 13593266 intergenic Tango13 +,up - chrX 13593328 intergenic Tango13 +,up - chrX_8_13590001 chrX_13590001 RAL-377 3270 chrX 13642865 13642875 chrX 13642967 13642975 4 102 5.0 1.5 3.2 1.0 110 chrX 13642865 intron NFAT + chrX 13642920 intron NFAT + chrX 13642975 intron NFAT + chrX_4_13640001 chrX_13640001 RAL-377 3271 chrX 13642876 13642908 chrX 13642966 13643007 9 96 2.0 1.5 1.8 3.2 131 chrX 13642876 intron NFAT + chrX 13642942 intron NFAT + chrX 13643007 intron NFAT + chrX_9_13640001 chrX_13640001 RAL-377 3272 chrX 13821456 13821475 chrX 13821553 13821572 4 97 5.5 1.5 3.5 0.9 116 chrX 13821456 intron Clic - chrX 13821514 intron Clic - chrX 13821572 intron Clic - chrX_4_13820001 chrX_13820001 RAL-377 3273 chrX 13908781 13908792 chrX 13908878 13908885 4 96 4.0 5.5 4.8 0.7 104 chrX 13908781 intron mamo - chrX 13908833 intron mamo - chrX 13908885 intron mamo - chrX_4_13905001 chrX_13905001 RAL-377 3274 chrX 13934276 13934319 chrX 13934379 13934422 10 103 2.5 3.0 2.8 2.6 146 chrX 13934276 intron mamo - chrX 13934349 intron mamo - chrX 13934422 intron mamo - chrX_10_13930001 chrX_13930001 RAL-377 3275 chrX 13935502 13935510 chrX 13935605 13935613 5 103 4.0 4.0 4.0 1.0 111 chrX 13935502 intron mamo - chrX 13935558 intron mamo - chrX 13935613 intron mamo - chrX_5_13935001 chrX_13935001 RAL-377 3276 chrX 13935513 13935524 chrX 13935598 13935627 4 98 4.0 4.0 4.0 0.8 114 chrX 13935513 intron mamo - chrX 13935570 intron mamo - chrX 13935627 intron mamo - chrX_4_13935001 chrX_13935001 RAL-377 3277 chrX 13937956 13937998 chrX 13941246 13941289 I-element 12 3291 4.5 3.0 3.8 2.5 3333 chrX 13937956 intron mamo - chrX 13939622 intron mamo - chrX 13941289 intron mamo - chrX_12_13935001 chrX_13935001 RAL-377 3278 chrX 13943272 13943292 chrX 13943382 13943403 5 111 0.0 4.0 2.0 1.7 131 chrX 13943272 intron mamo - chrX 13943338 intron mamo - chrX 13943403 intron mamo - chrX_5_13940001 chrX_13940001 RAL-377 3279 chrX 14105012 14105050 chrX 14114182 14114217 roo 7 9164 2.5 3.5 3.0 1.8 9205 chrX 14105012 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114217 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-377 3280 chrX 14126967 14126976 chrX 14127070 14127082 8 106 1.5 6.5 4.0 1.6 115 chrX 14126967 intergenic not near genes chrX 14127024 intergenic not near genes chrX 14127082 intergenic not near genes chrX_8_14125001 chrX_14125001 RAL-377 3281 chrX 5204674 5204676 chrX 14152337 14152339 TART-B 4 8947663 10.5 5.5 8.0 0.4 8947665 chrX 5204674 intron,intron CG15465 +,rg + chrX 9678506 exon nej - chrX 14152339 intergenic CG12479 - chrX_4_9675001 chrX_9675001 RAL-377 3282 chrX 14157573 14157591 chrX 14163250 14163261 297 5 5676 7.0 4.0 5.5 0.8 5688 chrX 14157573 intergenic not near genes chrX 14160417 intergenic not near genes chrX 14163261 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-377 3283 chrX 14209451 14209486 chrX 14209562 14209597 9 111 4.0 4.0 4.0 1.8 146 chrX 14209451 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209524 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209597 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-377 3284 chrX 14312754 14312787 chrX 14312855 14312888 13 99 5.0 0.0 2.5 3.7 134 chrX 14312754 intergenic not near genes chrX 14312821 intergenic not near genes chrX 14312888 intergenic not near genes chrX_13_14310001 chrX_14310001 RAL-377 3285 chrX 14384835 14384850 chrX 14385049 14385065 4 215 7.5 2.0 4.8 0.7 230 chrX 14384835 intron dpr8 + chrX 14384950 intron dpr8 + chrX 14385065 intron dpr8 + chrX_4_14380001 chrX_14380001 RAL-377 3286 chrX 14401529 14401574 chrX 14401658 14401702 13 128 1.5 2.5 2.0 4.3 173 chrX 14401529 intron dpr8 + chrX 14401616 intron dpr8 + chrX 14401702 intron dpr8 + chrX_13_14400001 chrX_14400001 RAL-377 3287 chrX 14404993 14405028 chrX 14405091 14405126 6 98 5.5 3.0 4.2 1.2 133 chrX 14404993 intron dpr8 + chrX 14405060 intron dpr8 + chrX 14405126 intron dpr8 + chrX_6_14405001 chrX_14405001 RAL-377 3288 chrX 14416291 14416335 chrX 14421079 14421121 F-element 8 4788 4.0 3.0 3.5 1.8 4830 chrX 14416291 intron dpr8 + chrX 14418706 intron dpr8 + chrX 14421121 intron dpr8 + chrX_8_14415001 chrX_14415001 RAL-377 3289 chrX 14484947 14484977 chrX 14485056 14485086 7 108 0.0 3.0 1.5 2.8 139 chrX 14484947 intergenic not near genes chrX 14485016 intergenic not near genes chrX 14485086 intergenic not near genes chrX_7_14485001 chrX_14485001 RAL-377 3290 chrX 14560259 14560299 chrX 14560352 14560403 10 102 2.0 5.0 3.5 2.2 144 chrX 14560259 intergenic not near genes chrX 14560331 intergenic not near genes chrX 14560403 intergenic not near genes chrX_10_14560001 chrX_14560001 RAL-377 3291 chrX 14597716 14597741 chrX 14597813 14597837 7 96 8.0 2.0 5.0 1.2 121 chrX 14597716 intron CG9413 - chrX 14597776 intron CG9413 - chrX 14597837 intron CG9413 - chrX_7_14595001 chrX_14595001 RAL-377 3292 chrX 14636446 14636494 chrX 14641907 14641935 I-element 5 5456 2.5 5.0 3.8 1.0 5489 chrX 14636446 intron NetA - chrX 14639190 intron NetA - chrX 14641935 intron NetA - chrX_5_14635001 chrX_14635001 RAL-377 3293 chrX 14778016 14778050 chrX 14782833 14782867 Doc 12 4817 5.5 5.5 5.5 1.8 4851 chrX 14778016 intergenic CG5347 + chrX 14780442 intergenic not near genes chrX 14782867 intergenic Ag5r2 - chrX_12_14780001 chrX_14780001 RAL-377 3294 chrX 14805531 14805553 chrX 14805687 14805709 8 156 5.5 3.5 4.5 1.5 178 chrX 14805531 intron rut - chrX 14805620 intron rut - chrX 14805709 intron rut - chrX_8_14805001 chrX_14805001 RAL-377 3295 chrX 14818744 14818793 chrX 14823967 14824017 copia 6 5219 3.5 4.5 4.0 1.2 5273 chrX 14818744 intron rut - chrX 14821380 intron rut - chrX 14824017 intron rut - chrX_6_14820001 chrX_14820001 RAL-377 3296 chrX 14903302 14903306 chrX 14903403 14903407 4 101 7.5 2.0 4.8 0.7 105 chrX 14903302 intron,intron Flo2 +,CG9512 - chrX 14903354 intron,intron Flo2 +,CG9512 - chrX 14903407 intron,intron Flo2 +,CG9512 - chrX_4_14900001 chrX_14900001 RAL-377 3297 chrX 14936840 14936878 chrX 14946117 14946155 roo 13 9277 4.5 4.0 4.2 2.5 9315 chrX 14936840 intron pdgy - chrX 14941498 intron pdgy - chrX 14946155 intron pdgy - chrX_13_14940001 chrX_14940001 RAL-377 3298 chrX 14968053 14968098 chrX 14968152 14968197 9 99 0.0 2.5 1.2 4.1 144 chrX 14968053 intron eag + chrX 14968125 intron eag + chrX 14968197 intron eag + chrX_9_14965001 chrX_14965001 RAL-377 3299 chrX 14981688 14981721 chrX 14981787 14981820 4 99 6.5 0.5 3.5 0.9 132 chrX 14981688 intron eag + chrX 14981754 intron eag + chrX 14981820 intron eag + chrX_4_14980001 chrX_14980001 RAL-377 3300 chrX 15200623 15200637 chrX 15200719 15200733 6 96 5.0 4.0 4.5 1.1 110 chrX 15200623 intergenic not near genes chrX 15200678 intergenic not near genes chrX 15200733 intergenic not near genes chrX_6_15200001 chrX_15200001 RAL-377 3301 chrX 15234346 15234390 chrX 15234449 15234491 12 103 3.0 3.0 3.0 3.0 145 chrX 15234346 intergenic not near genes chrX 15234418 intergenic not near genes chrX 15234491 intergenic not near genes chrX_12_15230001 chrX_15230001 RAL-377 3302 chrX 15248264 15248290 chrX 15248360 15248386 6 96 2.0 2.5 2.2 1.9 122 chrX 15248264 intergenic not near genes chrX 15248325 intergenic not near genes chrX 15248386 intergenic not near genes chrX_6_15245001 chrX_15245001 RAL-377 3303 chrX 15273707 15273737 chrX 15274868 15274920 1360 8 1177 1.5 5.0 3.2 1.9 1213 chrX 15273707 intergenic not near genes chrX 15274314 intergenic not near genes chrX 15274920 intergenic not near genes chrX_8_15270001 chrX_15270001 RAL-377 3304 chrX 15277614 15277666 chrX 15277719 15277770 17 101 2.5 1.0 1.8 6.1 156 chrX 15277614 intergenic not near genes chrX 15277692 intergenic not near genes chrX 15277770 intergenic not near genes chrX_17_15275001 chrX_15275001 RAL-377 3305 chrX 15358289 15358340 chrX 15358396 15358441 17 107 2.5 3.5 3.0 4.2 152 chrX 15358289 intron acj6 - chrX 15358365 intron acj6 - chrX 15358441 intron acj6 - chrX_17_15355001 chrX_15355001 RAL-377 3306 chrX 15413034 15413079 chrX 15417355 15417395 Juan 16 4321 4.5 7.0 5.8 2.4 4361 chrX 15413034 intron Cngl - chrX 15415214 intron Cngl - chrX 15417395 intron Cngl - chrX_16_15415001 chrX_15415001 RAL-377 3307 chrX 15429217 15429264 chrX 15429319 15429366 9 99 2.5 2.5 2.5 2.6 149 chrX 15429217 intron Cngl - chrX 15429292 intron Cngl - chrX 15429366 intron Cngl - chrX_9_15425001 chrX_15425001 RAL-377 3308 chrX 15543277 15543294 chrX 15543351 15543396 4 86 2.0 3.5 2.8 1.1 119 chrX 15543277 intron Ac13E - chrX 15543336 intron Ac13E - chrX 15543396 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-377 3309 chrX 15589443 15589451 chrX 15589625 15589650 5 194 3.0 3.5 3.2 1.2 207 chrX 15589443 intron CG9220 - chrX 15589546 intron CG9220 - chrX 15589650 exon CG9220 - chrX_5_15585001 chrX_15585001 RAL-377 3310 chrX 15591183 15591198 chrX 15591279 15591294 4 96 0.0 5.5 2.8 1.1 111 chrX 15591183 intron CG9220 - chrX 15591238 intron CG9220 - chrX 15591294 intron CG9220 - chrX_4_15590001 chrX_15590001 RAL-377 3311 chrX 4275590 4275590 chrX 15627327 15627327 6 11351737 13.5 23.5 18.5 0.3 11351737 chrX 4275590 3` UTR CR45483 - chrX 9951458 intergenic not near genes chrX 15627327 intron sog - chrX_6_9950001 chrX_9950001 RAL-377 3312 chrX 15678017 15678065 chrX 15678114 15678159 8 96 1.0 4.0 2.5 2.3 142 chrX 15678017 intergenic CG12708 + chrX 15678088 intergenic CG12708 + chrX 15678159 intergenic CG12708 + chrX_8_15675001 chrX_15675001 RAL-377 3313 chrX 15759487 15759533 chrX 15759583 15759623 16 95 7.5 4.5 6.0 2.3 136 chrX 15759487 intron Graf - chrX 15759555 intron Graf - chrX 15759623 intron Graf - chrX_16_15755001 chrX_15755001 RAL-377 3314 chrX 15759970 15759994 chrX 15760101 15760119 6 130 5.5 3.5 4.5 1.1 149 chrX 15759970 intron Graf - chrX 15760044 intron Graf - chrX 15760119 intron Graf - chrX_6_15760001 chrX_15760001 RAL-377 3315 chrX 15785196 15785225 chrX 15785299 15785312 6 98 3.5 0.0 1.8 2.1 116 chrX 15785196 intron Paf-AHalpha - chrX 15785254 5` UTR Paf-AHalpha - chrX 15785312 5` UTR Paf-AHalpha - chrX_6_15785001 chrX_15785001 RAL-377 3316 chrX 15959520 15959567 chrX 15959628 15959675 18 107 3.0 6.5 4.8 3.1 155 chrX 15959520 intron mmd - chrX 15959598 intron mmd - chrX 15959675 intron mmd - chrX_18_15955001 chrX_15955001 RAL-377 3317 chrX 16160278 16160300 chrX 16160374 16160396 6 95 4.5 3.0 3.8 1.2 118 chrX 16160278 intergenic not near genes chrX 16160337 intergenic not near genes chrX 16160396 intergenic not near genes chrX_6_16160001 chrX_16160001 RAL-377 3318 chrX 16222763 16222807 chrX 16231133 16231177 roo 12 8369 1.5 4.5 3.0 3.0 8414 chrX 16222763 intergenic not near genes chrX 16226970 intergenic not near genes chrX 16231177 intergenic not near genes chrX_12_16225001 chrX_16225001 RAL-377 3319 chrX 16295505 16295531 chrX 16295609 16295635 9 104 7.0 0.0 3.5 2.0 130 chrX 16295505 intron CG9911 - chrX 16295570 intron CG9911 - chrX 16295635 intron CG9911 - chrX_9_16295001 chrX_16295001 RAL-377 3320 chrX 16355257 16355300 chrX 16355439 16355466 17 180 7.0 3.0 5.0 2.8 209 chrX 16355257 3` UTR sl + chrX 16355362 3` UTR sl + chrX 16355466 3` UTR sl + chrX_17_16355001 chrX_16355001 RAL-377 3321 chrX 16381264 16381285 chrX 16381361 16381382 7 92 8.5 6.5 7.5 0.8 118 chrX 16381264 exon Fur2 + chrX 16381323 3` UTR Fur2 + chrX 16381382 3` UTR Fur2 + chrX_7_16380001 chrX_16380001 RAL-377 3322 chrX 16492625 16492674 chrX 16498222 16498271 mdg3 16 5597 3.0 3.0 3.0 4.0 5646 chrX 16492625 intron para - chrX 16495448 intron para - chrX 16498271 exon para - chrX_16_16495001 chrX_16495001 RAL-377 3323 chrX 16677312 16677333 chrX 16677467 16677488 5 155 0.0 1.0 0.5 3.3 176 chrX 16677312 intergenic not near genes chrX 16677400 intergenic not near genes chrX 16677488 intergenic not near genes chrX_5_16675001 chrX_16675001 RAL-377 3324 chrX 16821216 16821264 chrX 16821316 16821364 12 98 4.0 3.5 3.8 2.5 148 chrX 16821216 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821364 intron CG4829 + chrX_12_16820001 chrX_16820001 RAL-377 3325 chrX 16870060 16870098 chrX 16870162 16870201 8 102 2.5 1.0 1.8 2.9 141 chrX 16870060 intron CG13003 - chrX 16870130 intron CG13003 - chrX 16870201 intron CG13003 - chrX_8_16870001 chrX_16870001 RAL-377 3326 chrX 16880146 16880163 chrX 16880257 16880274 6 111 3.0 6.5 4.8 1.0 128 chrX 16880146 intergenic not near genes chrX 16880210 intergenic not near genes chrX 16880274 intergenic not near genes chrX_6_16880001 chrX_16880001 RAL-377 3327 chrX 16898083 16898115 chrX 16898180 16898214 6 99 3.5 0.5 2.0 2.0 131 chrX 16898083 intergenic not near genes chrX 16898148 intergenic not near genes chrX 16898214 intergenic not near genes chrX_6_16895001 chrX_16895001 RAL-377 3328 chrX 16906628 16906674 chrX 16906735 16906781 11 106 3.0 4.0 3.5 2.4 153 chrX 16906628 intron CR44754 - chrX 16906704 intron CR44754 - chrX 16906781 intron CR44754 - chrX_11_16905001 chrX_16905001 RAL-377 3329 chrX 16936013 16936024 chrX 16936437 16936462 jockey 4 434 0.0 2.5 1.2 1.8 449 chrX 16936013 intron CG4928 + chrX 16936238 intron CG4928 + chrX 16936462 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-377 3330 chrX 17006338 17006389 chrX 17006747 17006798 12 409 1.5 0.5 1.0 6.0 460 chrX 17006338 intron CG45002 - chrX 17006568 intron CG45002 - chrX 17006798 intron CG45002 - chrX_12_17005001 chrX_17005001 RAL-377 3331 chrX 17011954 17011980 chrX 17012057 17012083 6 102 1.5 2.0 1.8 2.1 129 chrX 17011954 intron CG45002 - chrX 17012018 intron CG45002 - chrX 17012083 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-377 3332 chrX 17011988 17012000 chrX 17012047 17012072 4 81 0.0 2.0 1.0 2.0 84 chrX 17011988 intron CG45002 - chrX 17012030 intron CG45002 - chrX 17012072 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-377 3333 chrX 17014461 17014483 chrX 17014598 17014620 7 137 5.5 4.0 4.8 1.2 159 chrX 17014461 intron CG45002 - chrX 17014540 intron CG45002 - chrX 17014620 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-377 3334 chrX 17057916 17057964 chrX 17058177 17058223 pogo 10 260 3.0 1.0 2.0 3.3 307 chrX 17057916 intron CG45002 - chrX 17058070 intron CG45002 - chrX 17058223 intron CG45002 - chrX_10_17055001 chrX_17055001 RAL-377 3335 chrX 17113545 17113569 chrX 17113648 17113672 5 103 0.0 6.5 3.2 1.2 127 chrX 17113545 intron CG5004 + chrX 17113608 intron CG5004 + chrX 17113672 intron CG5004 + chrX_5_17110001 chrX_17110001 RAL-377 3336 chrX 17195188 17195231 chrX 17200294 17200337 flea 11 5105 4.5 4.0 4.2 2.1 5149 chrX 17195188 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200337 3` UTR baz + chrX_11_17195001 chrX_17195001 RAL-377 3337 chrX 17205828 17205858 chrX 17205938 17205968 9 110 2.5 5.5 4.0 1.8 140 chrX 17205828 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205968 intergenic CG32564 + chrX_9_17205001 chrX_17205001 RAL-377 3338 chrX 17237519 17237532 chrX 17237623 17237632 5 102 6.5 3.5 5.0 0.8 113 chrX 17237519 intron f + chrX 17237576 intron f + chrX 17237632 intron f + chrX_5_17235001 chrX_17235001 RAL-377 3339 chrX 17316142 17316387 chrX 17316260 17316491 21 108 7.5 3.5 5.5 3.2 349 chrX 17316142 intron B-H2 + chrX 17316316 intron B-H2 + chrX 17316491 intron B-H2 + chrX_21_17315001 chrX_17315001 RAL-377 3340 chrX 17352577 17352618 chrX 17352691 17352741 14 122 0.0 3.5 1.8 5.0 164 chrX 17352577 intergenic not near genes chrX 17352659 intergenic not near genes chrX 17352741 intergenic not near genes chrX_14_17350001 chrX_17350001 RAL-377 3341 chrX 17435733 17435776 chrX 17435828 17435872 12 96 1.5 3.0 2.2 3.8 139 chrX 17435733 intron CG12994 - chrX 17435802 intron CG12994 - chrX 17435872 intron CG12994 - chrX_12_17435001 chrX_17435001 RAL-377 3342 chrX 17502331 17502369 chrX 17502431 17502469 10 100 3.5 3.5 3.5 2.2 138 chrX 17502331 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502469 intron CG43658 - chrX_10_17500001 chrX_17500001 RAL-377 3343 chrX 17508683 17508732 chrX 17508826 17508880 7 146 0.5 4.0 2.2 2.2 197 chrX 17508683 intron CG43658 - chrX 17508782 intron CG43658 - chrX 17508880 intron CG43658 - chrX_7_17505001 chrX_17505001 RAL-377 3344 chrX 17680892 17680924 chrX 17680968 17680991 7 82 3.0 3.5 3.2 1.7 99 chrX 17680892 intron chas - chrX 17680942 intron chas - chrX 17680991 intron chas - chrX_7_17680001 chrX_17680001 RAL-377 3345 chrX 17685446 17685473 chrX 17685549 17685576 11 101 1.0 5.0 3.0 2.8 130 chrX 17685446 intron chas - chrX 17685511 intron chas - chrX 17685576 intron chas - chrX_11_17685001 chrX_17685001 RAL-377 3346 chrX 17708815 17708858 chrX 17708912 17708957 11 98 3.5 3.0 3.2 2.6 142 chrX 17708815 intron CG8173 - chrX 17708886 intron CG8173 - chrX 17708957 intron CG8173 - chrX_11_17705001 chrX_17705001 RAL-377 3347 chrX 17716577 17716603 chrX 17716684 17716710 9 107 2.5 2.5 2.5 2.6 133 chrX 17716577 intron CG42684 + chrX 17716644 intron CG42684 + chrX 17716710 intron CG42684 + chrX_9_17715001 chrX_17715001 RAL-377 3348 chrX 17766338 17766377 chrX 17766456 17766495 5 118 2.5 4.0 3.2 1.2 157 chrX 17766338 intergenic not near genes chrX 17766416 intergenic not near genes chrX 17766495 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-377 3349 chrX 17792937 17792969 chrX 17796255 17796287 flea 4 3318 3.0 3.5 3.2 1.0 3350 chrX 17792937 intron OdsH + chrX 17794612 intron OdsH + chrX 17796287 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-377 3350 chrX 17965692 17965740 chrX 17965789 17965837 15 96 2.5 0.5 1.5 6.0 145 chrX 17965692 intron Sh - chrX 17965764 intron Sh - chrX 17965837 intron Sh - chrX_15_17965001 chrX_17965001 RAL-377 3351 chrX 17992501 17992555 chrX 17992615 17992669 13 114 2.0 2.5 2.2 4.1 168 chrX 17992501 intron Sh - chrX 17992585 intron Sh - chrX 17992669 intron Sh - chrX_13_17990001 chrX_17990001 RAL-377 3352 chrX 18020805 18020841 chrX 18020912 18020948 11 107 2.0 4.5 3.2 2.6 143 chrX 18020805 intron Sh - chrX 18020876 intron Sh - chrX 18020948 intron Sh - chrX_11_18020001 chrX_18020001 RAL-377 3353 chrX 18127533 18127576 chrX 18127631 18127661 4 93 2.0 2.0 2.0 1.3 128 chrX 18127533 intergenic not near genes chrX 18127597 intergenic not near genes chrX 18127661 intergenic not near genes chrX_4_18125001 chrX_18125001 RAL-377 3354 chrX 18218739 18218781 chrX 18218848 18218896 12 113 1.0 2.0 1.5 4.8 157 chrX 18218739 intron CG33639 - chrX 18218818 intron CG33639 - chrX 18218896 intron CG33639 - chrX_12_18215001 chrX_18215001 RAL-377 3355 chrX 18429475 18429525 chrX 18434806 18434834 Transpac 13 5329 2.0 5.5 3.8 2.7 5359 chrX 18429475 intergenic not near genes chrX 18432154 intergenic not near genes chrX 18434834 intergenic not near genes chrX_13_18430001 chrX_18430001 RAL-377 3356 chrX 18455214 18455231 chrX 18455314 18455331 8 100 4.5 2.5 3.5 1.8 117 chrX 18455214 intron CG32547 - chrX 18455272 intron CG32547 - chrX 18455331 intron CG32547 - chrX_8_18455001 chrX_18455001 RAL-377 3357 chrX 18467204 18467252 chrX 18467388 18467436 11 184 2.0 3.0 2.5 3.1 232 chrX 18467204 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467436 intron CG32547 - chrX_11_18465001 chrX_18465001 RAL-377 3358 chrX 18529376 18529399 chrX 18529471 18529495 9 96 2.5 5.0 3.8 1.9 119 chrX 18529376 intron,3` UTR Bx +,CG15047 + chrX 18529436 intron,3` UTR Bx +,CG15047 + chrX 18529495 intron,3` UTR Bx +,CG15047 + chrX_9_18525001 chrX_18525001 RAL-377 3359 chrX 18558775 18558797 chrX 18558877 18558899 9 101 0.5 4.5 2.5 2.6 124 chrX 18558775 intron Bx + chrX 18558837 intron Bx + chrX 18558899 intron Bx + chrX_9_18555001 chrX_18555001 RAL-377 3360 chrX 12946235 12946235 chrX 18572525 18572525 12 5626290 21.5 18.0 19.8 0.6 5626290 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_12_15755001 chrX_15755001 RAL-377 3361 chrX 18645000 18645047 chrX 18645118 18645165 18 118 4.5 2.5 3.5 4.0 165 chrX 18645000 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645165 intron Rip11 - chrX_18_18645001 chrX_18645001 RAL-377 3362 chrX 18698827 18698876 chrX 18698964 18698994 8 134 6.0 4.5 5.2 1.3 167 chrX 18698827 intergenic not near genes chrX 18698910 intergenic not near genes chrX 18698994 intergenic not near genes chrX_8_18695001 chrX_18695001 RAL-377 3363 chrX 18774427 18774452 chrX 18774532 18774551 9 104 4.0 2.0 3.0 2.2 124 chrX 18774427 intergenic CCKLR-17D3 - chrX 18774489 intergenic CCKLR-17D3 - chrX 18774551 intergenic not near genes chrX_9_18770001 chrX_18770001 RAL-377 3364 chrX 18896497 18896549 chrX 18896628 18896680 11 131 3.5 2.0 2.8 2.9 183 chrX 18896497 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896680 intergenic CG7349 + chrX_11_18895001 chrX_18895001 RAL-377 3365 chrX 18910381 18910416 chrX 18910481 18910509 4 98 2.5 3.5 3.0 1.0 128 chrX 18910381 3` UTR CG7378 + chrX 18910445 3` UTR CG7378 + chrX 18910509 3` UTR CG7378 + chrX_4_18910001 chrX_18910001 RAL-377 3366 chrX 18926524 18926542 chrX 18926636 18926649 7 111 0.5 0.0 0.2 5.8 125 chrX 18926524 intergenic not near genes chrX 18926586 intergenic not near genes chrX 18926649 intergenic not near genes chrX_7_18925001 chrX_18925001 RAL-377 3367 chrX 18947483 18947531 chrX 18947596 18947644 11 112 3.5 2.5 3.0 2.8 161 chrX 18947483 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947644 intron CG43759 + chrX_11_18945001 chrX_18945001 RAL-377 3368 chrX 18957050 18957091 chrX 18965731 18965771 roo 12 8680 2.5 4.0 3.2 2.9 8721 chrX 18957050 intron CG43759 + chrX 18961410 intron CG43759 + chrX 18965771 intron CG43759 + chrX_12_18960001 chrX_18960001 RAL-377 3369 chrX 18988303 18988526 chrX 18988459 18988635 4 138 0.0 0.0 0.0 4.0 332 chrX 18988303 intron CG43759 + chrX 18988469 intron CG43759 + chrX 18988635 intron CG43759 + chrX_4_18985001 chrX_18985001 RAL-377 3370 chrX 19060389 19060439 chrX 19065193 19065243 Doc 14 4804 3.0 4.5 3.8 2.9 4854 chrX 19060389 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065243 intron CG14190 + chrX_14_19060001 chrX_19060001 RAL-377 3371 chrX 19073674 19073693 chrX 19073781 19073800 7 107 6.5 5.0 5.8 1.0 126 chrX 19073674 intergenic not near genes chrX 19073737 intergenic not near genes chrX 19073800 intergenic not near genes chrX_7_19070001 chrX_19070001 RAL-377 3372 chrX 19089974 19089993 chrX 19090084 19090103 9 110 2.5 3.5 3.0 2.2 129 chrX 19089974 intergenic not near genes chrX 19090038 intergenic not near genes chrX 19090103 intergenic not near genes chrX_9_19090001 chrX_19090001 RAL-377 3373 chrX 19098756 19098780 chrX 19098854 19098878 8 98 2.5 4.5 3.5 1.8 122 chrX 19098756 intergenic not near genes chrX 19098817 intergenic not near genes chrX 19098878 intergenic not near genes chrX_8_19095001 chrX_19095001 RAL-377 3374 chrX 19125663 19125696 chrX 19125767 19125783 6 95 5.5 6.0 5.8 0.9 120 chrX 19125663 intron tgy - chrX 19125723 intron tgy - chrX 19125783 intron tgy - chrX_6_19125001 chrX_19125001 RAL-377 3375 chrX 19136532 19136585 chrX 19143472 19143524 412 8 6940 1.5 0.5 1.0 4.0 6992 chrX 19136532 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143524 3` UTR RhoGAP18B - chrX_8_19140001 chrX_19140001 RAL-377 3376 chrX 19214008 19214036 chrX 19214171 19214211 7 167 2.5 2.5 2.5 2.0 203 chrX 19214008 exon Mur18B + chrX 19214110 exon Mur18B + chrX 19214211 exon Mur18B + chrX_7_19210001 chrX_19210001 RAL-377 3377 chrX 19280997 19281019 chrX 19281146 19281168 12 149 0.0 1.5 0.8 6.7 171 chrX 19280997 intergenic CG8034 - chrX 19281082 intergenic CG8034 - chrX 19281168 intergenic CG8034 - chrX_12_19280001 chrX_19280001 RAL-377 3378 chrX 19356976 19357022 chrX 19358437 19358501 NOF 11 1462 7.5 0.0 3.8 2.3 1525 chrX 19356976 intron kek5 + chrX 19357738 intron kek5 + chrX 19358501 intron kek5 + chrX_11_19355001 chrX_19355001 RAL-377 3379 chrX 19380136 19380187 chrX 19380396 19380448 pogo 21 261 3.5 3.0 3.2 5.0 312 chrX 19380136 intron kek5 + chrX 19380292 intron kek5 + chrX 19380448 intron kek5 + chrX_21_19380001 chrX_19380001 RAL-377 3380 chrX 16983077 16983077 chrX 19404964 19404964 4 2421887 8.0 9.0 8.5 0.4 2421887 chrX 16983077 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-377 3381 chrX 19532851 19532866 chrX 19532948 19532956 7 95 5.0 4.5 4.8 1.2 105 chrX 19532851 3` UTR CG32532 - chrX 19532904 3` UTR CG32532 - chrX 19532956 3` UTR CG32532 - chrX_7_19530001 chrX_19530001 RAL-377 3382 chrX 19576541 19576582 chrX 19576639 19576673 6 96 4.5 3.5 4.0 1.2 132 chrX 19576541 intron Tao - chrX 19576607 intron Tao - chrX 19576673 intron Tao - chrX_6_19575001 chrX_19575001 RAL-377 3383 chrX 19593936 19593976 chrX 19594041 19594081 12 104 3.0 3.0 3.0 3.0 145 chrX 19593936 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594081 exon CG14205 + chrX_12_19590001 chrX_19590001 RAL-377 3384 chrX 19674191 19674240 chrX 19674291 19674343 10 100 4.0 2.5 3.2 2.4 152 chrX 19674191 intron et - chrX 19674267 intron et - chrX 19674343 intron et - chrX_10_19670001 chrX_19670001 RAL-377 3385 chrX 19689386 19689437 chrX 19689484 19689535 14 96 3.0 3.0 3.0 3.5 149 chrX 19689386 intergenic Mer -,CG14227 - chrX 19689460 intergenic Mer - chrX 19689535 intergenic Mer - chrX_14_19685001 chrX_19685001 RAL-377 3386 chrX 19693733 19693769 chrX 19693838 19693874 13 104 4.0 0.0 2.0 4.3 141 chrX 19693733 intergenic Mer -,CG14229 - chrX 19693804 intergenic CG14229 -,Mer - chrX 19693874 intergenic CG14229 -,Mer - chrX_13_19690001 chrX_19690001 RAL-377 3387 chrX 19707834 19707874 chrX 19707930 19707970 9 96 2.0 1.0 1.5 3.6 136 chrX 19707834 intron meso18E - chrX 19707902 intron meso18E - chrX 19707970 intron meso18E - chrX_9_19705001 chrX_19705001 RAL-377 3388 chrX 19710054 19710101 chrX 19711860 19711906 S-element 13 1805 2.5 3.5 3.0 3.2 1852 chrX 19710054 intron meso18E - chrX 19710980 intron meso18E - chrX 19711906 intron meso18E - chrX_13_19710001 chrX_19710001 RAL-377 3389 chrX 19822820 19822861 chrX 19822996 19823048 6 185 2.0 4.5 3.2 1.4 228 chrX 19822820 intergenic not near genes chrX 19822934 intergenic skpE - chrX 19823048 intergenic skpE - chrX_6_19820001 chrX_19820001 RAL-377 3390 chrX 19880385 19880392 chrX 19880524 19880530 4 139 4.0 6.0 5.0 0.7 145 chrX 19880385 intron Hers + chrX 19880458 intron Hers + chrX 19880530 intron Hers + chrX_4_19880001 chrX_19880001 RAL-377 3391 chrX 19881434 19881477 chrX 19881535 19881578 9 100 3.5 2.0 2.8 2.4 144 chrX 19881434 intron Hers + chrX 19881506 intron Hers + chrX 19881578 intron Hers + chrX_9_19880001 chrX_19880001 RAL-377 3392 chrX 19971802 19971824 chrX 19971899 19971921 5 97 3.5 3.0 3.2 1.2 119 chrX 19971802 intergenic not near genes chrX 19971862 intergenic not near genes chrX 19971921 intergenic not near genes chrX_5_19970001 chrX_19970001 RAL-377 3393 chrX 19983848 19983897 chrX 19983948 19983997 14 99 2.0 2.0 2.0 4.7 149 chrX 19983848 intergenic not near genes chrX 19983922 intergenic not near genes chrX 19983997 intergenic not near genes chrX_14_19980001 chrX_19980001 RAL-377 3394 chrX 19992401 19992428 chrX 19992496 19992516 6 90 3.0 4.0 3.5 1.3 115 chrX 19992401 intergenic not near genes chrX 19992458 intergenic not near genes chrX 19992516 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-377 3395 chrX 20042363 20042418 chrX 20042464 20042519 10 101 3.0 1.5 2.2 3.1 156 chrX 20042363 intron Dop2R - chrX 20042441 intron Dop2R - chrX 20042519 intron Dop2R - chrX_10_20040001 chrX_20040001 RAL-377 3396 chrX 20122536 20122571 chrX 20122649 20122686 5 110 1.5 2.5 2.0 1.7 150 chrX 20122536 exon CG34331 + chrX 20122611 exon CG34331 + chrX 20122686 intron CG34331 + chrX_5_20120001 chrX_20120001 RAL-377 3397 chrX 20125375 20125398 chrX 20125477 20125500 8 102 0.0 4.0 2.0 2.7 125 chrX 20125375 intergenic CG34331 + chrX 20125438 intergenic CG34331 + chrX 20125500 intergenic CG34331 + chrX_8_20125001 chrX_20125001 RAL-377 3398 chrX 20126881 20126909 chrX 20126971 20127007 4 88 1.0 0.0 0.5 2.7 126 chrX 20126881 intergenic not near genes chrX 20126944 intergenic not near genes chrX 20127007 intergenic not near genes chrX_4_20125001 chrX_20125001 RAL-377 3399 chrX 20144302 20144314 chrX 20144402 20144414 6 100 3.5 6.5 5.0 1.0 112 chrX 20144302 intergenic not near genes chrX 20144358 intergenic not near genes chrX 20144414 intergenic not near genes chrX_6_20140001 chrX_20140001 RAL-377 3400 chrX 20271512 20271524 chrX 20271624 20271636 4 112 1.5 0.0 0.8 2.2 124 chrX 20271512 intergenic not near genes chrX 20271574 intergenic not near genes chrX 20271636 intergenic not near genes chrX_4_20270001 chrX_20270001 RAL-377 3401 chrX 20290131 20290181 chrX 20290238 20290288 6 102 3.5 4.5 4.0 1.2 157 chrX 20290131 intergenic not near genes chrX 20290210 intergenic not near genes chrX 20290288 intergenic not near genes chrX_6_20290001 chrX_20290001 RAL-377 3402 chrX 20312860 20312909 chrX 20312958 20312991 15 97 4.0 2.5 3.2 3.6 131 chrX 20312860 intron CG1504 - chrX 20312926 intron CG1504 - chrX 20312991 intron CG1504 - chrX_15_20310001 chrX_20310001 RAL-377 3403 chrX 20369301 20369342 chrX 20369405 20369446 14 104 1.5 3.0 2.2 4.4 145 chrX 20369301 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369446 intergenic not near genes chrX_14_20365001 chrX_20365001 RAL-377 3404 chrX 20377325 20377341 chrX 20378812 20378826 hobo 6 1484 3.0 4.5 3.8 1.2 1501 chrX 20377325 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378826 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-377 3405 chrX 20468003 20468027 chrX 20468112 20468136 8 108 6.0 0.0 3.0 2.0 133 chrX 20468003 intron GstT3 + chrX 20468070 intron GstT3 + chrX 20468136 intron GstT3 + chrX_8_20465001 chrX_20465001 RAL-377 3406 chrX 20493914 20493929 chrX 20494095 20494110 9 181 0.0 8.5 4.2 1.7 196 chrX 20493914 intron RhoGAP19D - chrX 20494012 intron RhoGAP19D - chrX 20494110 intron RhoGAP19D - chrX_9_20490001 chrX_20490001 RAL-377 3407 chrX 20504110 20504156 chrX 20505651 20505697 transib2 12 1540 2.0 3.5 2.8 3.2 1587 chrX 20504110 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505697 intron RhoGAP19D - chrX_12_20500001 chrX_20500001 RAL-377 3408 chrX 20531740 20531791 chrX 20531859 20531910 7 119 4.0 2.5 3.2 1.7 170 chrX 20531740 intergenic not near genes chrX 20531825 intergenic not near genes chrX 20531910 intergenic not near genes chrX_7_20530001 chrX_20530001 RAL-377 3409 chrX 20546535 20546567 chrX 20546721 20546753 13 186 3.5 2.5 3.0 3.2 218 chrX 20546535 intron RunxB + chrX 20546644 intron RunxB + chrX 20546753 intron RunxB + chrX_13_20545001 chrX_20545001 RAL-377 3410 chrX 20575136 20575186 chrX 20575234 20575284 7 97 1.5 1.0 1.2 3.2 148 chrX 20575136 intergenic CG42580 + chrX 20575210 intergenic not near genes chrX 20575284 intergenic not near genes chrX_7_20575001 chrX_20575001 RAL-377 3411 chrX 20594285 20594324 chrX 20594390 20594430 8 102 1.0 3.0 2.0 2.7 145 chrX 20594285 intron RunxA - chrX 20594358 intron RunxA - chrX 20594430 intron RunxA - chrX_8_20590001 chrX_20590001 RAL-377 3412 chrX 20635414 20635447 chrX 20635600 20635633 6 185 1.0 0.0 0.5 4.0 219 chrX 20635414 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635633 intergenic not near genes chrX_6_20635001 chrX_20635001 RAL-377 3413 chrX 20707634 20707667 chrX 20710504 20710532 13 2869 2.0 2.0 2.0 4.3 2898 chrX 20707634 intergenic not near genes chrX 20709083 intergenic not near genes chrX 20710532 intergenic not near genes chrX_13_20705001 chrX_20705001 RAL-377 3414 chrX 20780207 20780237 chrX 20780451 20780482 10 244 1.5 4.0 2.8 2.6 275 chrX 20780207 intron,3` UTR shakB -,CG32507 - chrX 20780344 intron,3` UTR shakB -,CG32507 - chrX 20780482 intron,3` UTR shakB -,CG32507 - chrX_10_20780001 chrX_20780001 RAL-377 3415 chrX 20783989 20784036 chrX 20784121 20784168 15 131 3.5 5.0 4.2 2.9 179 chrX 20783989 intron shakB - chrX 20784078 intron shakB - chrX 20784168 intron shakB - chrX_15_20780001 chrX_20780001 RAL-377 3416 chrX 20836706 20836758 chrX 20844328 20844380 roo 14 7622 3.5 2.5 3.0 3.5 7674 chrX 20836706 intron shakB - chrX 20840543 intron shakB - chrX 20844380 intron shakB - chrX_14_20840001 chrX_20840001 RAL-377 3417 chrX 20940699 20940736 chrX 20942187 20942225 hobo 9 1488 3.5 1.0 2.2 2.8 1526 chrX 20940699 intergenic not near genes chrX 20941462 intergenic not near genes chrX 20942225 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-377 3418 chrX 20956971 20957006 chrX 20962433 20962467 I-element 11 5462 5.5 5.0 5.2 1.8 5496 chrX 20956971 intergenic not near genes chrX 20959719 intergenic not near genes chrX 20962467 intergenic Ser6 - chrX_11_20955001 chrX_20955001 RAL-377 3419 chrX 21076308 21076356 chrX 21076407 21076455 10 99 3.0 0.0 1.5 4.0 147 chrX 21076308 intron bves + chrX 21076382 intron bves + chrX 21076455 intron bves + chrX_10_21075001 chrX_21075001 RAL-377 3420 chrX 21077579 21077631 chrX 21077688 21077739 15 106 1.5 2.5 2.0 5.0 160 chrX 21077579 intron bves + chrX 21077659 intron bves + chrX 21077739 intron bves + chrX_15_21075001 chrX_21075001 RAL-377 3421 chrX 21078756 21078776 chrX 21078849 21078869 6 96 5.5 0.5 3.0 1.5 113 chrX 21078756 intron bves + chrX 21078812 intron bves + chrX 21078869 intron bves + chrX_6_21075001 chrX_21075001 RAL-377 3422 chrX 21086137 21086158 chrX 21087167 21087207 jockey 11 1044 2.5 5.0 3.8 2.3 1070 chrX 21086137 intergenic not near genes chrX 21086672 intergenic not near genes chrX 21087207 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-377 3423 chrX 21088031 21088056 chrX 21088183 21088208 8 151 8.0 3.5 5.8 1.2 177 chrX 21088031 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088208 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-377 3424 chrX 21118045 21118082 chrX 21118161 21118198 8 115 3.5 3.0 3.2 1.9 153 chrX 21118045 intron CG15445 + chrX 21118122 intron CG15445 + chrX 21118198 intron CG15445 + chrX_8_21115001 chrX_21115001 RAL-377 3425 chrX 21166120 21166164 chrX 21166218 21166265 8 99 2.5 3.5 3.0 2.0 145 chrX 21166120 intergenic not near genes chrX 21166192 intergenic not near genes chrX 21166265 intergenic not near genes chrX_8_21165001 chrX_21165001 RAL-377 3426 chrX 21190561 21190815 chrX 21190737 21190916 8 138 0.0 0.0 0.0 8.0 355 chrX 21190561 intergenic not near genes chrX 21190738 intergenic not near genes chrX 21190916 intergenic not near genes chrX_8_21190001 chrX_21190001 RAL-377 3427 chrX 21197042 21197083 chrX 21197140 21197180 12 94 2.0 2.5 2.2 3.8 138 chrX 21197042 intergenic not near genes chrX 21197111 intergenic not near genes chrX 21197180 intergenic not near genes chrX_12_21195001 chrX_21195001 RAL-377 3428 chrX 21222071 21222101 chrX 21222176 21222205 8 104 1.0 4.0 2.5 2.3 134 chrX 21222071 intron CG32521 - chrX 21222138 intron CG32521 - chrX 21222205 intron CG32521 - chrX_8_21220001 chrX_21220001 RAL-377 3429 chrX 21254634 21254665 chrX 21255570 21255581 hopper2 5 930 1.5 0.0 0.8 2.8 947 chrX 21254634 intron CG32521 - chrX 21255108 intron CG32521 - chrX 21255581 intron CG32521 - chrX_5_21255001 chrX_21255001 RAL-377 3430 chrX 21264709 21264759 chrX 21264805 21264855 13 95 3.0 7.0 5.0 2.2 146 chrX 21264709 intron CG32521 - chrX 21264782 intron CG32521 - chrX 21264855 intron CG32521 - chrX_13_21260001 chrX_21260001 RAL-377 3431 chrX 21274446 21274485 chrX 21274562 21274601 8 115 4.0 4.5 4.2 1.5 155 chrX 21274446 intron CG32521 - chrX 21274524 intron CG32521 - chrX 21274601 intron CG32521 - chrX_8_21270001 chrX_21270001 RAL-377 3432 chrX 21328102 21328142 chrX 21328233 21328269 11 131 4.5 2.0 3.2 2.6 167 chrX 21328102 3` UTR CG1486 + chrX 21328186 intergenic CG1486 +,tty - chrX 21328269 intergenic CG1486 +,tty - chrX_11_21325001 chrX_21325001 RAL-377 3433 chrX 21388362 21388406 chrX 21388539 21388583 13 177 2.5 1.5 2.0 4.3 221 chrX 21388362 intergenic Hlc - chrX 21388472 intergenic not near genes chrX 21388583 intergenic mst + chrX_13_21385001 chrX_21385001 RAL-377 3434 chrX 21410634 21410670 chrX 21410733 21410769 8 98 0.0 4.5 2.2 2.5 135 chrX 21410634 intergenic CR45003 - chrX 21410702 intergenic CR45003 - chrX 21410769 intergenic CR45003 - chrX_8_21410001 chrX_21410001 RAL-377 3435 chrX 21419191 21419229 chrX 21419296 21419334 17 105 6.0 4.0 5.0 2.8 143 chrX 21419191 intergenic not near genes chrX 21419262 intergenic not near genes chrX 21419334 intergenic not near genes chrX_17_21415001 chrX_21415001 RAL-377 3436 chrX 21455205 21455243 chrX 21455399 21455450 6 202 1.0 0.0 0.5 4.0 245 chrX 21455205 intron CG42343 - chrX 21455328 intron CG42343 - chrX 21455450 intron CG42343 - chrX_6_21455001 chrX_21455001 RAL-377 3437 chrX 21458680 21458719 chrX 21464136 21464175 Ivk 13 5456 5.0 7.0 6.0 1.9 5495 chrX 21458680 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464175 intergenic not near genes chrX_13_21460001 chrX_21460001 RAL-377 3438 chrX 21592855 21592884 chrX 21599759 21599788 micropia 13 6904 28.0 16.5 22.2 0.6 6933 chrX 21592855 intergenic not near genes chrX 21596322 intergenic not near genes chrX 21599788 intergenic not near genes chrX_13_21595001 chrX_21595001 RAL-377 3439 chrX 21668251 21668285 chrX 21668355 21668390 10 105 5.5 1.0 3.2 2.4 139 chrX 21668251 intergenic not near genes chrX 21668320 intergenic not near genes chrX 21668390 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-377 3440 chrX 22448249 22448290 chrX 22448408 22448449 9 159 1.0 4.5 2.8 2.4 200 chrX 22448249 intron CG14615 - chrX 22448349 intron CG14615 - chrX 22448449 intron CG14615 - chrX_9_22445001 chrX_22445001 RAL-377 3441 chrX 22478871 22478898 chrX 22479024 22479051 12 153 0.0 0.0 0.0 12.0 180 chrX 22478871 intron CG12576 - chrX 22478961 intron CG12576 - chrX 22479051 intron CG12576 - chrX_12_22475001 chrX_22475001 RAL-377 3442 chrX 22522619 22522644 chrX 22525458 22525484 NOF 12 2840 6.5 8.0 7.2 1.5 2865 chrX 22522619 intron CG17600 + chrX 22524052 intron CG17600 + chrX 22525484 intron CG17600 + chrX_12_22520001 chrX_22520001 RAL-377 3443 chrX 22526899 22526914 chrX 22526973 22527014 4 83 2.0 4.5 3.2 1.0 115 chrX 22526899 intron CG17600 + chrX 22526956 intron CG17600 + chrX 22527014 intron CG17600 + chrX_4_22525001 chrX_22525001 RAL-377 3444 chrX 22549746 22549754 chrX 22549951 22549959 4 205 8.5 3.0 5.8 0.6 213 chrX 22549746 intergenic not near genes chrX 22549852 intergenic not near genes chrX 22549959 intergenic not near genes chrX_4_22545001 chrX_22545001 RAL-377 3445 chrX 22585505 22585537 chrX 22585608 22585641 6 103 3.0 3.0 3.0 1.5 136 chrX 22585505 intron Cda4 - chrX 22585573 intron Cda4 - chrX 22585641 intron Cda4 - chrX_6_22585001 chrX_22585001 RAL-377 3446 chrX 22586015 22586028 chrX 22644844 22644857 5 58830 19.0 9.0 14.0 0.3 58842 chrX 22586015 intron Cda4 - chrX 22615436 intron Cda4 - chrX 22644857 intergenic not near genes chrX_5_22615001 chrX_22615001 RAL-377 3447 chrX 22660553 22660604 chrX 22660657 22660708 8 103 3.5 0.0 1.8 2.9 155 chrX 22660553 intron CR44997 + chrX 22660630 intron CR44997 + chrX 22660708 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-377 3448 chrX 22665777 22665825 chrX 22665875 22665914 11 96 0.5 3.0 1.8 3.9 137 chrX 22665777 intron CR44997 + chrX 22665846 intron CR44997 + chrX 22665914 intron CR44997 + chrX_11_22665001 chrX_22665001 RAL-377 3449 chrX 22681462 22681480 chrX 22688938 22688943 HMS-Beagle2 6 7474 10.5 2.5 6.5 0.8 7481 chrX 22681462 intron CR44997 + chrX 22685202 intron CR44997 + chrX 22688943 intron CR44997 + chrX_6_22685001 chrX_22685001 RAL-377 3450 chrX 22692433 22692485 chrX 22692531 22692581 10 98 5.5 4.5 5.0 1.7 148 chrX 22692433 intron CR44997 + chrX 22692507 intron CR44997 + chrX 22692581 intron CR44997 + chrX_10_22690001 chrX_22690001 RAL-377 3451 chrX 22697489 22697521 chrX 22701806 22701838 Juan 16 4317 5.0 6.0 5.5 2.5 4349 chrX 22697489 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701838 intron CR44997 + chrX_16_22695001 chrX_22695001 RAL-377 3452 chrX 22764355 22764397 chrX 22764471 22764513 8 116 2.0 2.5 2.2 2.5 158 chrX 22764355 intron CR44997 + chrX 22764434 intron CR44997 + chrX 22764513 intron CR44997 + chrX_8_22760001 chrX_22760001 RAL-377 3453 chrX 22771491 22771537 chrX 22774797 22774848 297 8 3310 1.5 2.0 1.8 2.9 3357 chrX 22771491 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774848 intron CR44997 + chrX_8_22770001 chrX_22770001 RAL-377 3454 chrX 22797011 22797023 chrX 22797116 22797128 4 105 0.0 7.5 3.8 0.8 117 chrX 22797011 intron CR44997 + chrX 22797070 intron CR44997 + chrX 22797128 intron CR44997 + chrX_4_22795001 chrX_22795001 RAL-377 3455 chrX 22820941 22820994 chrX 22821149 22821197 9 207 1.0 4.5 2.8 2.4 256 chrX 22820941 intergenic not near genes chrX 22821069 intergenic not near genes chrX 22821197 intergenic not near genes chrX_9_22820001 chrX_22820001 RAL-377 3456 chrX 22898844 22898864 chrX 22899261 22899289 4 419 4.0 0.0 2.0 1.3 445 chrX 22898844 intergenic not near genes chrX 22899066 intergenic not near genes chrX 22899289 intergenic not near genes chrX_4_22895001 chrX_22895001 RAL-377 3457 chrX 22916181 22916205 chrX 22916337 22916361 6 156 0.0 4.5 2.2 1.9 180 chrX 22916181 intergenic not near genes chrX 22916271 intergenic not near genes chrX 22916361 intergenic not near genes chrX_6_22915001 chrX_22915001 RAL-377 3458 chrX 22922499 22922549 chrX 22922599 22922642 9 92 3.0 4.5 3.8 1.9 143 chrX 22922499 intergenic not near genes chrX 22922570 intergenic not near genes chrX 22922642 intergenic not near genes chrX_9_22920001 chrX_22920001 RAL-377 3459 chrX 22960786 22960791 chrX 22961008 22961013 5 222 0.0 4.0 2.0 1.7 227 chrX 22960786 3` UTR CG40485 - chrX 22960900 3` UTR CG40485 - chrX 22961013 3` UTR CG40485 - chrX_5_22960001 chrX_22960001 RAL-377 3460 chrX 22987084 22987124 chrX 22989763 22989803 Burdock 9 2678 4.0 2.0 3.0 2.2 2719 chrX 22987084 intron,intron stnA -,stnB - chrX 22988444 intron,intron stnA -,stnB - chrX 22989803 intron,intron stnA -,stnB - chrX_9_22985001 chrX_22985001 RAL-377 3461 chrX 22992375 22992429 chrX 22992526 22992580 13 151 1.5 1.5 1.5 5.2 205 chrX 22992375 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992580 3` UTR,exon stnA -,stnB - chrX_13_22990001 chrX_22990001 RAL-377 3462 chrX 22996296 22996336 chrX 23003548 23003588 roo 8 7251 2.0 4.5 3.2 1.9 7292 chrX 22996296 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003588 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-377 3463 chrX 23036362 23036410 chrX 23037783 23037831 pogo 12 1420 3.0 5.0 4.0 2.4 1469 chrX 23036362 intron CG12061 + chrX 23037096 intron CG12061 + chrX 23037831 intron CG12061 + chrX_12_23035001 chrX_23035001 RAL-377 3464 chrY 975597 975645 chrY 975734 975758 4 125 81.0 92.5 86.8 0.0 161 chrY 975597 intergenic not near genes chrY 975678 intergenic not near genes chrY 975758 intergenic not near genes chrY_4_975001 chrY_975001 RAL-377 3465 chrY 975799 975817 chrY 975884 975913 5 99 86.0 112.5 99.2 0.0 114 chrY 975799 intergenic not near genes chrY 975856 intergenic not near genes chrY 975913 intergenic not near genes chrY_5_975001 chrY_975001 RAL-377 3466 chrY 1419882 1419916 chrY 1420156 1420190 7 274 17.5 14.0 15.8 0.4 308 chrY 1419882 intergenic not near genes chrY 1420036 intergenic not near genes chrY 1420190 intergenic not near genes chrY_7_1420001 chrY_1420001 RAL-377