SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46358 46383 chr2L 46436 46461 6 78 1.0 2.5 1.8 2.1 103 chr2L 46358 intron Cda5 - chr2L 46410 intron Cda5 - chr2L 46461 intron Cda5 - chr2L_6_45001 chr2L_45001 RAL-375 2 chr2L 47458 47488 chr2L 52563 52593 jockey 21 5104 4.0 5.5 4.8 3.6 5135 chr2L 47458 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_21_50001 chr2L_50001 RAL-375 3 chr2L 89716 89746 chr2L 89793 89823 5 75 3.0 2.0 2.5 1.4 107 chr2L 89716 intergenic not near genes chr2L 89770 intergenic not near genes chr2L 89823 intergenic not near genes chr2L_5_85001 chr2L_85001 RAL-375 4 chr2L 172067 172090 chr2L 172148 172171 4 77 1.5 2.5 2.0 1.3 104 chr2L 172067 intron spen + chr2L 172119 intron spen + chr2L 172171 intron spen + chr2L_4_170001 chr2L_170001 RAL-375 5 chr2L 179459 179491 chr2L 179542 179573 6 83 2.5 1.5 2.0 2.0 114 chr2L 179459 intron spen + chr2L 179516 intron spen + chr2L 179573 intron spen + chr2L_6_175001 chr2L_175001 RAL-375 6 chr2L 222261 222285 chr2L 226726 226754 5 4469 23.0 20.5 21.8 0.2 4493 chr2L 222261 intron kis - chr2L 224508 intron,5` UTR kis -,CR44222 + chr2L 226754 intron kis - chr2L_5_220001 chr2L_220001 RAL-375 7 chr2L 263299 263318 chr2L 263445 263463 5 146 1.0 3.0 2.0 1.7 164 chr2L 263299 intron,3` UTR CG3645 -,CG17075 - chr2L 263381 intron,3` UTR CG3645 -,CG17075 - chr2L 263463 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-375 8 chr2L 297691 297716 chr2L 297791 297815 8 99 1.5 3.5 2.5 2.3 124 chr2L 297691 intergenic Pi3K21B +,Hop + chr2L 297753 intergenic Pi3K21B +,Hop + chr2L 297815 intergenic Pi3K21B +,Hop + chr2L_8_295001 chr2L_295001 RAL-375 9 chr2L 314129 314154 chr2L 314206 314231 7 76 1.5 0.5 1.0 3.5 102 chr2L 314129 intron Plc21C + chr2L 314180 intron Plc21C + chr2L 314231 intron Plc21C + chr2L_7_310001 chr2L_310001 RAL-375 10 chr2L 323454 323486 chr2L 323531 323560 9 75 3.5 0.0 1.8 3.2 106 chr2L 323454 intron Plc21C + chr2L 323507 intron Plc21C + chr2L 323560 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-375 11 chr2L 325138 325155 chr2L 325205 325232 5 72 6.0 3.0 4.5 0.9 94 chr2L 325138 intron Plc21C + chr2L 325185 intron Plc21C + chr2L 325232 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-375 12 chr2L 347889 347915 chr2L 355389 355415 blood 9 7500 1.0 4.5 2.8 2.4 7526 chr2L 347889 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_9_350001 chr2L_350001 RAL-375 13 chr2L 429318 429348 chr2L 429422 429452 6 102 2.5 3.0 2.8 1.6 134 chr2L 429318 intergenic not near genes chr2L 429385 intergenic not near genes chr2L 429452 intergenic not near genes chr2L_6_425001 chr2L_425001 RAL-375 14 chr2L 467360 467491 chr2L 467459 467580 7 92 2.0 4.0 3.0 1.8 220 chr2L 467360 intron CG4297 - chr2L 467470 intron CG4297 - chr2L 467580 intron CG4297 - chr2L_7_465001 chr2L_465001 RAL-375 15 chr2L 630324 630333 chr2L 630416 630425 5 92 0.0 7.5 3.8 1.0 101 chr2L 630324 intergenic not near genes chr2L 630374 intergenic not near genes chr2L 630425 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-375 16 chr2L 668438 668464 chr2L 668518 668544 6 77 2.5 3.0 2.8 1.6 106 chr2L 668438 intron ds - chr2L 668491 intron ds - chr2L 668544 intron ds - chr2L_6_665001 chr2L_665001 RAL-375 17 chr2L 686919 686946 chr2L 695959 695986 roo 8 9040 2.5 2.0 2.2 2.5 9067 chr2L 686919 intron ds - chr2L 691452 intron ds - chr2L 695986 intron ds - chr2L_8_690001 chr2L_690001 RAL-375 18 chr2L 770471 770494 chr2L 772250 772274 Bari1 5 1776 2.5 5.0 3.8 1.0 1803 chr2L 770471 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772274 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-375 19 chr2L 877845 877863 chr2L 877922 877944 6 80 7.5 4.5 6.0 0.9 99 chr2L 877845 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-375 20 chr2L 908376 908409 chr2L 908456 908470 9 77 6.0 2.0 4.0 1.8 94 chr2L 908376 intergenic not near genes chr2L 908423 intergenic not near genes chr2L 908470 intergenic not near genes chr2L_9_905001 chr2L_905001 RAL-375 21 chr2L 908786 908802 chr2L 908868 908884 4 82 4.5 1.0 2.8 1.1 98 chr2L 908786 intergenic not near genes chr2L 908835 intergenic not near genes chr2L 908884 intergenic not near genes chr2L_4_905001 chr2L_905001 RAL-375 22 chr2L 922468 922495 chr2L 922549 922575 8 81 1.5 5.0 3.2 1.9 107 chr2L 922468 intergenic CG4341 + chr2L 922522 intergenic CG4341 + chr2L 922575 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-375 23 chr2L 931632 931658 chr2L 931711 931737 8 78 5.0 3.5 4.2 1.5 105 chr2L 931632 intron CG4341 + chr2L 931684 intron CG4341 + chr2L 931737 intron CG4341 + chr2L_8_930001 chr2L_930001 RAL-375 24 chr2L 976881 976903 chr2L 984516 984539 roo 9 7635 4.5 2.5 3.5 2.0 7658 chr2L 976881 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984539 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-375 25 chr2L 1042603 1042615 chr2L 1042694 1042706 6 91 3.0 0.0 1.5 2.4 103 chr2L 1042603 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042706 intron IA-2 - chr2L_6_1040001 chr2L_1040001 RAL-375 26 chr2L 1094237 1094273 chr2L 1094313 1094349 13 76 1.5 1.5 1.5 5.2 112 chr2L 1094237 intron CG4629 - chr2L 1094293 intron CG4629 - chr2L 1094349 intron CG4629 - chr2L_13_1090001 chr2L_1090001 RAL-375 27 chr2L 1220130 1220162 chr2L 1227595 1227628 blood 13 7465 4.0 2.5 3.2 3.1 7498 chr2L 1220130 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_13_1220001 chr2L_1220001 RAL-375 28 chr2L 1322023 1322051 chr2L 1322112 1322140 10 88 2.0 1.5 1.8 3.6 117 chr2L 1322023 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322140 intergenic not near genes chr2L_10_1320001 chr2L_1320001 RAL-375 29 chr2L 1343529 1343561 chr2L 1343721 1343754 8 192 3.0 1.5 2.2 2.5 225 chr2L 1343529 exon CG33922 - chr2L 1343642 intron CG33922 - chr2L 1343754 exon CG33922 - chr2L_8_1340001 chr2L_1340001 RAL-375 30 chr2L 1536502 1536517 chr2L 1536634 1536646 5 131 0.0 3.5 1.8 1.8 144 chr2L 1536502 intergenic not near genes chr2L 1536574 intergenic not near genes chr2L 1536646 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-375 31 chr2L 1541037 1541065 chr2L 1541113 1541143 8 77 1.5 1.0 1.2 3.6 106 chr2L 1541037 intergenic not near genes chr2L 1541090 intergenic not near genes chr2L 1541143 intergenic not near genes chr2L_8_1540001 chr2L_1540001 RAL-375 32 chr2L 1564456 1564491 chr2L 1564543 1564566 13 84 2.5 1.5 2.0 4.3 110 chr2L 1564456 intron haf + chr2L 1564511 intron haf + chr2L 1564566 intron haf + chr2L_13_1560001 chr2L_1560001 RAL-375 33 chr2L 1570684 1570717 chr2L 1573556 1573589 F-element 6 2872 4.0 1.5 2.8 1.6 2905 chr2L 1570684 intron haf + chr2L 1572136 intron haf + chr2L 1573589 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-375 34 chr2L 1584148 1584171 chr2L 1584388 1584411 4 240 16.0 6.0 11.0 0.3 263 chr2L 1584148 intron haf + chr2L 1584280 intron haf + chr2L 1584411 intron haf + chr2L_4_1580001 chr2L_1580001 RAL-375 35 chr2L 1584129 1584158 chr2L 1584327 1584358 8 200 15.0 10.5 12.8 0.6 229 chr2L 1584129 intron haf + chr2L 1584244 intron haf + chr2L 1584358 intron haf + chr2L_8_1580001 chr2L_1580001 RAL-375 36 chr2L 1590959 1590974 chr2L 1591035 1591050 5 76 5.0 3.0 4.0 1.0 91 chr2L 1590959 intron haf + chr2L 1591004 intron haf + chr2L 1591050 intron haf + chr2L_5_1590001 chr2L_1590001 RAL-375 37 chr2L 1590979 1590987 chr2L 1591033 1591063 5 71 3.5 3.0 3.2 1.2 84 chr2L 1590979 intron haf + chr2L 1591021 intron haf + chr2L 1591063 intron haf + chr2L_5_1590001 chr2L_1590001 RAL-375 38 chr2L 1635398 1635432 chr2L 1635534 1635568 17 135 0.0 4.5 2.2 5.3 170 chr2L 1635398 intergenic not near genes chr2L 1635483 intergenic not near genes chr2L 1635568 intergenic not near genes chr2L_17_1635001 chr2L_1635001 RAL-375 39 chr2L 1655451 1655480 chr2L 1655532 1655560 9 80 2.0 1.0 1.5 3.6 109 chr2L 1655451 intron chinmo + chr2L 1655506 intron chinmo + chr2L 1655560 intron chinmo + chr2L_9_1655001 chr2L_1655001 RAL-375 40 chr2L 1678978 1679006 chr2L 1686443 1686471 blood 10 7463 2.5 5.5 4.0 2.0 7493 chr2L 1678978 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686471 intron chinmo + chr2L_10_1680001 chr2L_1680001 RAL-375 41 chr2L 1711360 1711384 chr2L 1711684 1711708 mdg3 5 324 2.5 6.0 4.2 1.0 348 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-375 42 chr2L 1721831 1721855 chr2L 1721915 1721939 7 80 0.0 2.0 1.0 3.5 108 chr2L 1721831 intron Rim2 - chr2L 1721885 intron Rim2 - chr2L 1721939 intron Rim2 - chr2L_7_1720001 chr2L_1720001 RAL-375 43 chr2L 1996906 1996914 chr2L 1996987 1996996 5 81 0.0 0.5 0.2 4.2 90 chr2L 1996906 intergenic CG33543 - chr2L 1996951 intergenic CG33543 - chr2L 1996996 intergenic CG33543 - chr2L_5_1995001 chr2L_1995001 RAL-375 44 chr2L 2007851 2007873 chr2L 2007959 2007981 7 108 1.5 2.0 1.8 2.5 130 chr2L 2007851 intergenic CR45712 + chr2L 2007916 intergenic CR45712 +,Nplp4 + chr2L 2007981 intergenic CR45712 +,Nplp4 + chr2L_7_2005001 chr2L_2005001 RAL-375 45 chr2L 2085706 2085730 chr2L 2086044 2086069 8 338 1.5 5.0 3.2 1.9 363 chr2L 2085706 intron dpr3 - chr2L 2085888 intron dpr3 - chr2L 2086069 intron dpr3 - chr2L_8_2085001 chr2L_2085001 RAL-375 46 chr2L 2093750 2093760 chr2L 2093852 2093861 5 101 4.0 10.0 7.0 0.6 111 chr2L 2093750 intron dpr3 - chr2L 2093806 intron dpr3 - chr2L 2093861 intron dpr3 - chr2L_5_2090001 chr2L_2090001 RAL-375 47 chr2L 2100376 2100406 chr2L 2109526 2109557 roo 8 9151 4.5 3.0 3.8 1.7 9181 chr2L 2100376 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109557 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-375 48 chr2L 2112123 2112145 chr2L 2119785 2119805 opus 6 7658 2.0 5.0 3.5 1.3 7682 chr2L 2112123 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119805 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-375 49 chr2L 2260802 2260833 chr2L 2260888 2260916 8 86 3.5 2.0 2.8 2.1 114 chr2L 2260802 intergenic not near genes chr2L 2260859 intergenic not near genes chr2L 2260916 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-375 50 chr2L 2303508 2303535 chr2L 2303591 2303616 6 82 4.5 3.5 4.0 1.2 108 chr2L 2303508 intergenic not near genes chr2L 2303562 intergenic not near genes chr2L 2303616 intergenic not near genes chr2L_6_2300001 chr2L_2300001 RAL-375 51 chr2L 2311077 2311087 chr2L 2311172 2311182 7 96 4.5 0.0 2.2 2.2 105 chr2L 2311077 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311182 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-375 52 chr2L 2319438 2319475 chr2L 2319531 2319572 9 94 0.0 0.0 0.0 9.0 134 chr2L 2319438 intron,intron CG9967 -,eys + chr2L 2319505 intron,intron CG9967 -,eys + chr2L 2319572 intron,intron CG9967 -,eys + chr2L_9_2315001 chr2L_2315001 RAL-375 53 chr2L 2525217 2525229 chr2L 2525470 2525493 6 263 2.5 4.5 3.5 1.3 276 chr2L 2525217 intergenic not near genes chr2L 2525355 intergenic not near genes chr2L 2525493 intergenic not near genes chr2L_6_2525001 chr2L_2525001 RAL-375 54 chr2L 2587816 2587845 chr2L 2587895 2587924 5 78 1.0 3.5 2.2 1.6 108 chr2L 2587816 intergenic not near genes chr2L 2587870 intergenic not near genes chr2L 2587924 intergenic not near genes chr2L_5_2585001 chr2L_2585001 RAL-375 55 chr2L 2613384 2613415 chr2L 2613469 2613482 6 81 0.5 2.0 1.2 2.7 98 chr2L 2613384 intergenic not near genes chr2L 2613433 intergenic not near genes chr2L 2613482 intergenic not near genes chr2L_6_2610001 chr2L_2610001 RAL-375 56 chr2L 2661197 2661234 chr2L 2663035 2663049 I-element 9 1832 1.5 0.5 1.0 4.5 1852 chr2L 2661197 intergenic not near genes chr2L 2662123 intergenic not near genes chr2L 2663049 intergenic not near genes chr2L_9_2660001 chr2L_2660001 RAL-375 57 chr2L 2793941 2793977 chr2L 2794021 2794056 8 76 1.0 2.5 1.8 2.9 115 chr2L 2793941 intron Syt1 - chr2L 2793998 intron Syt1 - chr2L 2794056 intron Syt1 - chr2L_8_2790001 chr2L_2790001 RAL-375 58 chr2L 2826537 2826575 chr2L 2826629 2826659 4 84 0.0 3.0 1.5 1.6 122 chr2L 2826537 intron Duox - chr2L 2826598 intron Duox - chr2L 2826659 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-375 59 chr2L 2885373 2885395 chr2L 2885450 2885472 10 77 0.0 2.5 1.2 4.5 99 chr2L 2885373 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885472 intron NTPase - chr2L_10_2885001 chr2L_2885001 RAL-375 60 chr2L 2887298 2887313 chr2L 2887414 2887429 4 114 1.5 4.5 3.0 1.0 131 chr2L 2887298 intron lilli + chr2L 2887364 intron lilli + chr2L 2887429 intron lilli + chr2L_4_2885001 chr2L_2885001 RAL-375 61 chr2L 2912935 2912965 chr2L 2913090 2913117 9 154 0.5 0.5 0.5 6.0 182 chr2L 2912935 intron lilli + chr2L 2913026 intron lilli + chr2L 2913117 intron lilli + chr2L_9_2910001 chr2L_2910001 RAL-375 62 chr2L 2933312 2933332 chr2L 2935485 2935492 pogo 9 2174 5.0 5.0 5.0 1.5 2180 chr2L 2933312 intron lilli + chr2L 2934402 intron lilli + chr2L 2935492 intron lilli + chr2L_9_2930001 chr2L_2930001 RAL-375 63 chr2L 3073031 3073063 chr2L 3078234 3078266 copia 11 5201 1.0 3.5 2.2 3.4 5235 chr2L 3073031 intron toc - chr2L 3075648 intron toc - chr2L 3078266 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-375 64 chr2L 3108887 3108898 chr2L 3108964 3108975 7 77 2.5 3.0 2.8 1.8 88 chr2L 3108887 intron toc - chr2L 3108931 intron toc - chr2L 3108975 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-375 65 chr2L 3147274 3147308 chr2L 3147351 3147385 15 77 2.5 3.0 2.8 3.9 111 chr2L 3147274 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147385 3` UTR Mad - chr2L_15_3145001 chr2L_3145001 RAL-375 66 chr2L 3191511 3191545 chr2L 3191592 3191626 12 80 1.5 1.5 1.5 4.8 115 chr2L 3191511 intron CG34393 - chr2L 3191568 intron CG34393 - chr2L 3191626 intron CG34393 - chr2L_12_3190001 chr2L_3190001 RAL-375 67 chr2L 3192207 3192242 chr2L 3192318 3192352 12 109 4.0 3.5 3.8 2.5 145 chr2L 3192207 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_12_3190001 chr2L_3190001 RAL-375 68 chr2L 3251498 3251517 chr2L 3259063 3259082 springer 6 7565 4.0 3.5 3.8 1.2 7584 chr2L 3251498 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-375 69 chr2L 3291238 3291266 chr2L 3291318 3291346 5 80 4.0 3.5 3.8 1.0 108 chr2L 3291238 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291346 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-375 70 chr2L 3294355 3294384 chr2L 3294452 3294481 10 97 0.5 3.0 1.8 3.6 126 chr2L 3294355 5` UTR CG9664 - chr2L 3294418 5` UTR CG9664 - chr2L 3294481 5` UTR CG9664 - chr2L_10_3290001 chr2L_3290001 RAL-375 71 chr2L 3380733 3380748 chr2L 3380816 3380833 8 84 0.0 1.5 0.8 4.4 100 chr2L 3380733 intergenic not near genes chr2L 3380783 intergenic not near genes chr2L 3380833 intergenic not near genes chr2L_8_3380001 chr2L_3380001 RAL-375 72 chr2L 3388608 3388629 chr2L 3388849 3388870 pogo 6 241 2.0 4.5 3.2 1.4 262 chr2L 3388608 intergenic CG42460 - chr2L 3388739 intergenic CG42460 - chr2L 3388870 intergenic CG42460 -,CR44791 + chr2L_6_3385001 chr2L_3385001 RAL-375 73 chr2L 3508355 3508369 chr2L 3508433 3508447 8 78 0.0 3.5 1.8 2.9 92 chr2L 3508355 intergenic tim -,CR45299 + chr2L 3508401 intergenic CR45299 +,tim - chr2L 3508447 intergenic CR45299 +,tim - chr2L_8_3505001 chr2L_3505001 RAL-375 74 chr2L 3634102 3634137 chr2L 3634184 3634219 19 82 3.5 3.5 3.5 4.2 117 chr2L 3634102 intron for - chr2L 3634160 intron for - chr2L 3634219 intron for - chr2L_19_3630001 chr2L_3630001 RAL-375 75 chr2L 3649791 3649816 chr2L 3654994 3655019 copia 9 5203 2.0 3.0 2.5 2.6 5228 chr2L 3649791 intron for - chr2L 3652405 intron for - chr2L 3655019 intron for - chr2L_9_3650001 chr2L_3650001 RAL-375 76 chr2L 3686033 3686053 chr2L 3686121 3686141 5 88 0.0 3.0 1.5 2.0 108 chr2L 3686033 intron CG34340 + chr2L 3686087 intron CG34340 + chr2L 3686141 intron CG34340 + chr2L_5_3685001 chr2L_3685001 RAL-375 77 chr2L 3733919 3733945 chr2L 3734023 3734049 9 103 1.5 3.0 2.2 2.8 130 chr2L 3733919 intron CG10019 + chr2L 3733984 intron CG10019 + chr2L 3734049 intron CG10019 + chr2L_9_3730001 chr2L_3730001 RAL-375 78 chr2L 3784814 3784824 chr2L 3785674 3785684 5 859 19.0 1.5 10.2 0.4 870 chr2L 3784814 intergenic CG31960 + chr2L 3785249 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-375 79 chr2L 3785477 3785499 chr2L 3785552 3785575 6 76 4.0 4.0 4.0 1.2 98 chr2L 3785477 3` UTR CG31960 + chr2L 3785526 3` UTR CG31960 + chr2L 3785575 3` UTR CG31960 + chr2L_6_3785001 chr2L_3785001 RAL-375 80 chr2L 3785603 3785635 chr2L 3786377 3786377 5 767 2.5 17.0 9.8 0.5 774 chr2L 3785603 3` UTR CG31960 + chr2L 3785990 exon CG31958 + chr2L 3786377 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-375 81 chr2L 3819032 3819062 chr2L 3819114 3819144 11 82 1.0 0.0 0.5 7.3 112 chr2L 3819032 intergenic CR44077 + chr2L 3819088 intergenic not near genes chr2L 3819144 intergenic not near genes chr2L_11_3815001 chr2L_3815001 RAL-375 82 chr2L 3891896 3891927 chr2L 3891979 3892010 7 84 1.0 0.0 0.5 4.7 114 chr2L 3891896 intron capu - chr2L 3891953 intron capu - chr2L 3892010 intron capu - chr2L_7_3890001 chr2L_3890001 RAL-375 83 chr2L 3906038 3906068 chr2L 3906184 3906201 8 142 4.5 3.0 3.8 1.7 163 chr2L 3906038 intron fred - chr2L 3906120 intron fred - chr2L 3906201 intron fred - chr2L_8_3905001 chr2L_3905001 RAL-375 84 chr2L 3943802 3943820 chr2L 3943893 3943911 9 91 2.0 3.0 2.5 2.6 109 chr2L 3943802 intron fred - chr2L 3943856 intron fred - chr2L 3943911 intron fred - chr2L_9_3940001 chr2L_3940001 RAL-375 85 chr2L 4014658 4014684 chr2L 4014799 4014827 10 142 2.0 4.5 3.2 2.4 169 chr2L 4014658 intergenic not near genes chr2L 4014742 intergenic not near genes chr2L 4014827 intergenic not near genes chr2L_10_4010001 chr2L_4010001 RAL-375 86 chr2L 4066045 4066063 chr2L 4068870 4068888 Juan 8 2825 2.5 3.0 2.8 2.1 2843 chr2L 4066045 intron ed + chr2L 4067466 intron ed + chr2L 4068888 intron ed + chr2L_8_4065001 chr2L_4065001 RAL-375 87 chr2L 4150621 4150649 chr2L 4150701 4150729 5 79 0.0 1.5 0.8 2.8 108 chr2L 4150621 exon CG2955 + chr2L 4150675 exon CG2955 + chr2L 4150729 exon CG2955 + chr2L_5_4150001 chr2L_4150001 RAL-375 88 chr2L 4184497 4184503 chr2L 4184816 4184822 5 319 0.5 4.5 2.5 1.4 325 chr2L 4184497 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184822 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-375 89 chr2L 4231764 4231780 chr2L 4232062 4232078 5 298 2.5 3.0 2.8 1.3 314 chr2L 4231764 intergenic not near genes chr2L 4231921 intergenic not near genes chr2L 4232078 intergenic not near genes chr2L_5_4230001 chr2L_4230001 RAL-375 90 chr2L 4265494 4265522 chr2L 4265580 4265607 4 86 2.0 1.0 1.5 1.6 113 chr2L 4265494 intergenic not near genes chr2L 4265550 intergenic not near genes chr2L 4265607 intergenic not near genes chr2L_4_4265001 chr2L_4265001 RAL-375 91 chr2L 4369543 4369569 chr2L 4370127 4370154 10 584 0.5 5.5 3.0 2.5 611 chr2L 4369543 intron Traf4 + chr2L 4369848 intron Traf4 + chr2L 4370154 intron Traf4 + chr2L_10_4365001 chr2L_4365001 RAL-375 92 chr2L 4571857 4571868 chr2L 4571942 4571953 6 85 8.5 0.0 4.2 1.2 96 chr2L 4571857 intron dp - chr2L 4571905 intron dp - chr2L 4571953 intron dp - chr2L_6_4570001 chr2L_4570001 RAL-375 93 chr2L 4601702 4601737 chr2L 4609143 4609177 mdg1 14 7440 4.0 2.5 3.2 3.3 7475 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-375 94 chr2L 4638023 4638027 chr2L 4638100 4638104 4 77 6.0 1.5 3.8 0.8 81 chr2L 4638023 intergenic not near genes chr2L 4638064 intergenic not near genes chr2L 4638104 intergenic not near genes chr2L_4_4635001 chr2L_4635001 RAL-375 95 chr2L 4819496 4819517 chr2L 4819617 4819632 7 121 2.5 7.0 4.8 1.2 136 chr2L 4819496 intergenic not near genes chr2L 4819564 intergenic not near genes chr2L 4819632 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-375 96 chr2L 4892892 4892895 chr2L 4892975 4892978 4 83 0.0 5.5 2.8 1.1 86 chr2L 4892892 intron CG3036 + chr2L 4892935 intron CG3036 + chr2L 4892978 intron CG3036 + chr2L_4_4890001 chr2L_4890001 RAL-375 97 chr2L 4918174 4918198 chr2L 4923247 4923271 jockey 9 5073 3.0 2.0 2.5 2.6 5097 chr2L 4918174 intron hoe1 - chr2L 4920722 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_9_4920001 chr2L_4920001 RAL-375 98 chr2L 4953527 4953539 chr2L 4953757 4953780 pogo 4 238 4.5 1.5 3.0 1.0 253 chr2L 4953527 intergenic Jon25Bii - chr2L 4953654 intergenic not near genes chr2L 4953780 intergenic Jon25Bi - chr2L_4_4950001 chr2L_4950001 RAL-375 99 chr2L 5092414 5092440 chr2L 5092501 5092527 8 87 2.5 3.0 2.8 2.1 113 chr2L 5092414 intron pgant5 - chr2L 5092470 intron pgant5 - chr2L 5092527 intron pgant5 - chr2L_8_5090001 chr2L_5090001 RAL-375 100 chr2L 5096703 5096734 chr2L 5097771 5097800 5 1067 2.5 24.0 13.2 0.4 1097 chr2L 5096703 intron CG4230 + chr2L 5097252 intron CG4230 + chr2L 5097800 exon CG4230 + chr2L_5_5095001 chr2L_5095001 RAL-375 101 chr2L 5096767 5096786 chr2L 5097805 5097820 4 1035 7.5 20.5 14.0 0.3 1053 chr2L 5096767 intron CG4230 + chr2L 5097294 intron CG4230 + chr2L 5097820 exon CG4230 + chr2L_4_5095001 chr2L_5095001 RAL-375 102 chr2L 5120985 5121004 chr2L 5121077 5121098 6 93 3.0 5.0 4.0 1.2 113 chr2L 5120985 intron Msp300 + chr2L 5121042 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_6_5120001 chr2L_5120001 RAL-375 103 chr2L 5242936 5242937 chr2L 16217660 16217660 5 10974724 22.0 19.5 20.8 0.2 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_5_10730001 chr2L_10730001 RAL-375 104 chr2L 5397100 5397133 chr2L 5397181 5397213 13 81 1.0 2.0 1.5 5.2 113 chr2L 5397100 intergenic not near genes chr2L 5397156 intergenic not near genes chr2L 5397213 intergenic not near genes chr2L_13_5395001 chr2L_5395001 RAL-375 105 chr2L 5508529 5508558 chr2L 5508605 5508634 7 76 4.0 3.0 3.5 1.6 105 chr2L 5508529 intergenic not near genes chr2L 5508582 intergenic not near genes chr2L 5508634 intergenic not near genes chr2L_7_5505001 chr2L_5505001 RAL-375 106 chr2L 5511327 5511356 chr2L 5511410 5511439 7 83 4.0 5.0 4.5 1.3 112 chr2L 5511327 intergenic not near genes chr2L 5511383 intergenic not near genes chr2L 5511439 intergenic not near genes chr2L_7_5510001 chr2L_5510001 RAL-375 107 chr2L 5691828 5691852 chr2L 5691929 5691954 4 102 1.0 1.0 1.0 2.0 126 chr2L 5691828 intergenic CR44819 +,CR44820 - chr2L 5691891 intergenic CR44819 +,CR44820 - chr2L 5691954 intergenic CR44819 + chr2L_4_5690001 chr2L_5690001 RAL-375 108 chr2L 5695864 5695890 chr2L 5695956 5695981 4 92 3.0 3.5 3.2 1.0 117 chr2L 5695864 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5695981 intergenic not near genes chr2L_4_5695001 chr2L_5695001 RAL-375 109 chr2L 5762445 5762478 chr2L 5762530 5762563 8 85 1.5 3.0 2.2 2.5 118 chr2L 5762445 intergenic CG11030 +,obst-E - chr2L 5762504 intergenic obst-E -,CG11030 + chr2L 5762563 3` UTR obst-E - chr2L_8_5760001 chr2L_5760001 RAL-375 110 chr2L 5774469 5774487 chr2L 5774548 5774564 5 75 3.5 7.0 5.2 0.8 95 chr2L 5774469 intron CG9171 - chr2L 5774516 intron CG9171 - chr2L 5774564 intron CG9171 - chr2L_5_5770001 chr2L_5770001 RAL-375 111 chr2L 5814695 5814711 chr2L 5814778 5814794 5 83 3.5 1.5 2.5 1.4 99 chr2L 5814695 intergenic not near genes chr2L 5814744 intergenic not near genes chr2L 5814794 intergenic not near genes chr2L_5_5810001 chr2L_5810001 RAL-375 112 chr2L 5819671 5819696 chr2L 5819755 5819760 6 80 3.5 1.0 2.2 1.9 89 chr2L 5819671 intergenic not near genes chr2L 5819716 intergenic not near genes chr2L 5819760 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-375 113 chr2L 5825071 5825097 chr2L 5825156 5825191 4 87 1.5 0.0 0.8 2.2 120 chr2L 5825071 5` UTR TrissinR + chr2L 5825131 5` UTR TrissinR + chr2L 5825191 5` UTR TrissinR + chr2L_4_5825001 chr2L_5825001 RAL-375 114 chr2L 5827710 5827737 chr2L 5836718 5836745 roo 15 9006 4.0 4.0 4.0 3.0 9035 chr2L 5827710 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_15_5830001 chr2L_5830001 RAL-375 115 chr2L 5887601 5887632 chr2L 5887682 5887713 16 80 2.0 2.5 2.2 5.0 112 chr2L 5887601 3` UTR CR44577 - chr2L 5887657 3` UTR CR44577 - chr2L 5887713 3` UTR CR44577 - chr2L_16_5885001 chr2L_5885001 RAL-375 116 chr2L 5904462 5904474 chr2L 5904542 5904554 10 80 3.0 0.0 1.5 4.0 92 chr2L 5904462 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904554 intron CG9021 - chr2L_10_5900001 chr2L_5900001 RAL-375 117 chr2L 5926346 5926622 chr2L 5926466 5926701 7 91 3.0 0.0 1.5 2.8 355 chr2L 5926346 intron dsf + chr2L 5926524 intron dsf + chr2L 5926701 intron dsf + chr2L_7_5925001 chr2L_5925001 RAL-375 118 chr2L 5962267 5962305 chr2L 5962343 5962381 7 76 4.5 2.5 3.5 1.6 114 chr2L 5962267 intergenic not near genes chr2L 5962324 intergenic not near genes chr2L 5962381 intergenic not near genes chr2L_7_5960001 chr2L_5960001 RAL-375 119 chr2L 6007105 6007127 chr2L 6007181 6007203 8 76 1.5 0.0 0.8 4.4 98 chr2L 6007105 intergenic CG9098 -,Gal - chr2L 6007154 intergenic CG9098 -,Gal - chr2L 6007203 intergenic CG9098 -,Gal - chr2L_8_6005001 chr2L_6005001 RAL-375 120 chr2L 6050443 6050462 chr2L 6050547 6050554 9 103 4.5 2.0 3.2 2.1 111 chr2L 6050443 intergenic CG12393 +,CG9135 + chr2L 6050498 intergenic CG12393 +,CG9135 + chr2L 6050554 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-375 121 chr2L 6136575 6136582 chr2L 6136672 6136679 6 96 0.5 5.5 3.0 1.5 104 chr2L 6136575 intergenic not near genes chr2L 6136627 intergenic not near genes chr2L 6136679 intergenic not near genes chr2L_6_6135001 chr2L_6135001 RAL-375 122 chr2L 6185442 6185473 chr2L 6185519 6185549 5 76 4.0 4.0 4.0 1.0 107 chr2L 6185442 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-375 123 chr2L 6253623 6253635 chr2L 6253698 6253710 7 75 4.0 2.5 3.2 1.7 87 chr2L 6253623 intron Ddr + chr2L 6253666 intron Ddr + chr2L 6253710 intron Ddr + chr2L_7_6250001 chr2L_6250001 RAL-375 124 chr2L 6318736 6318757 chr2L 6318889 6318897 9 152 5.0 2.0 3.5 2.0 161 chr2L 6318736 intron Ddr + chr2L 6318816 intron Ddr + chr2L 6318897 intron Ddr + chr2L_9_6315001 chr2L_6315001 RAL-375 125 chr2L 6363162 6363179 chr2L 6366083 6366100 Burdock 5 2921 3.5 6.5 5.0 0.8 2938 chr2L 6363162 intergenic not near genes chr2L 6364631 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-375 126 chr2L 6426855 6426887 chr2L 6445115 6445147 roo 18 18259 5.0 6.5 5.8 2.6 18292 chr2L 6426855 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_18_6435001 chr2L_6435001 RAL-375 127 chr2L 6544371 6544394 chr2L 6544463 6544486 8 91 2.5 4.5 3.5 1.8 115 chr2L 6544371 intron eya - chr2L 6544428 intron eya - chr2L 6544486 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-375 128 chr2L 6626889 6626919 chr2L 6626974 6627004 9 85 4.0 3.5 3.8 1.9 115 chr2L 6626889 intron Oatp26F - chr2L 6626946 intron Oatp26F - chr2L 6627004 intron Oatp26F - chr2L_9_6625001 chr2L_6625001 RAL-375 129 chr2L 6640908 6640939 chr2L 6641000 6641028 11 94 3.5 1.0 2.2 3.4 120 chr2L 6640908 exon CG31635 - chr2L 6640968 intron CG31635 - chr2L 6641028 intron CG31635 - chr2L_11_6640001 chr2L_6640001 RAL-375 130 chr2L 6715754 6715778 chr2L 6715835 6715862 5 83 2.0 2.0 2.0 1.7 108 chr2L 6715754 intron AkhR - chr2L 6715808 intron AkhR - chr2L 6715862 intron AkhR - chr2L_5_6715001 chr2L_6715001 RAL-375 131 chr2L 6793839 6793856 chr2L 6793967 6793998 5 137 0.5 5.0 2.8 1.3 159 chr2L 6793839 intron nrv2 - chr2L 6793918 intron nrv2 - chr2L 6793998 intron nrv2 - chr2L_5_6790001 chr2L_6790001 RAL-375 132 chr2L 6799535 6799564 chr2L 6799623 6799652 7 88 0.5 0.5 0.5 4.7 117 chr2L 6799535 5` UTR CR43610 + chr2L 6799594 5` UTR CR43610 + chr2L 6799652 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-375 133 chr2L 7005233 7005247 chr2L 7005329 7005343 5 96 4.0 1.0 2.5 1.4 110 chr2L 7005233 intron uif - chr2L 7005288 intron uif - chr2L 7005343 intron uif - chr2L_5_7005001 chr2L_7005001 RAL-375 134 chr2L 7088885 7088898 chr2L 7089086 7089099 4 201 0.0 0.5 0.2 3.3 214 chr2L 7088885 intergenic not near genes chr2L 7088992 intergenic not near genes chr2L 7089099 intergenic not near genes chr2L_4_7085001 chr2L_7085001 RAL-375 135 chr2L 7090000 7090022 chr2L 7090077 7090099 5 77 1.0 1.5 1.2 2.3 99 chr2L 7090000 intergenic not near genes chr2L 7090050 intergenic not near genes chr2L 7090099 intergenic not near genes chr2L_5_7090001 chr2L_7090001 RAL-375 136 chr2L 7125795 7125810 chr2L 7125911 7125926 5 116 1.5 3.5 2.5 1.4 131 chr2L 7125795 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125926 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-375 137 chr2L 7126861 7126869 chr2L 7126938 7126948 7 79 2.0 0.0 1.0 3.5 87 chr2L 7126861 intron Pvf3 - chr2L 7126904 intron Pvf3 - chr2L 7126948 intron Pvf3 - chr2L_7_7125001 chr2L_7125001 RAL-375 138 chr2L 7197995 7198017 chr2L 7198074 7198096 9 78 5.0 2.0 3.5 2.0 101 chr2L 7197995 intron CG4502 - chr2L 7198046 intron CG4502 - chr2L 7198096 intron CG4502 - chr2L_9_7195001 chr2L_7195001 RAL-375 139 chr2L 7254538 7254544 chr2L 7254616 7254622 4 78 0.0 2.5 1.2 1.8 84 chr2L 7254538 intergenic not near genes chr2L 7254580 intergenic not near genes chr2L 7254622 intergenic not near genes chr2L_4_7250001 chr2L_7250001 RAL-375 140 chr2L 7258159 7258188 chr2L 7258251 7258283 5 94 1.0 2.5 1.8 1.8 124 chr2L 7258159 intron,3` UTR Wnt4 -,CG31909 + chr2L 7258221 intron Wnt4 - chr2L 7258283 intron Wnt4 - chr2L_5_7255001 chr2L_7255001 RAL-375 141 chr2L 7258491 7258516 chr2L 7258656 7258691 4 172 0.5 2.0 1.2 1.8 200 chr2L 7258491 intron Wnt4 - chr2L 7258591 intron Wnt4 - chr2L 7258691 intron Wnt4 - chr2L_4_7255001 chr2L_7255001 RAL-375 142 chr2L 7301300 7301329 chr2L 7301382 7301408 8 82 2.5 3.0 2.8 2.1 108 chr2L 7301300 intergenic not near genes chr2L 7301354 intergenic not near genes chr2L 7301408 intergenic not near genes chr2L_8_7300001 chr2L_7300001 RAL-375 143 chr2L 7335204 7335231 chr2L 7335297 7335328 6 96 3.5 1.5 2.5 1.7 124 chr2L 7335204 intron Wnt6 + chr2L 7335266 intron Wnt6 + chr2L 7335328 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-375 144 chr2L 7343330 7343359 chr2L 7350439 7350474 roo 5 7114 2.5 1.5 2.0 1.7 7144 chr2L 7343330 intron Wnt6 + chr2L 7346902 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-375 145 chr2L 7376264 7376279 chr2L 7376848 7376863 4 584 1.5 1.5 1.5 1.6 599 chr2L 7376264 intron Wnt10 + chr2L 7376564 intron Wnt10 + chr2L 7376863 intron Wnt10 + chr2L_4_7375001 chr2L_7375001 RAL-375 146 chr2L 7436200 7436209 chr2L 7436291 7436303 5 93 2.5 1.5 2.0 1.7 103 chr2L 7436200 intergenic not near genes chr2L 7436252 intergenic not near genes chr2L 7436303 intergenic not near genes chr2L_5_7435001 chr2L_7435001 RAL-375 147 chr2L 7516336 7516355 chr2L 7516447 7516470 11 114 4.5 3.5 4.0 2.2 134 chr2L 7516336 intron RapGAP1 - chr2L 7516403 intron RapGAP1 - chr2L 7516470 intron RapGAP1 - chr2L_11_7515001 chr2L_7515001 RAL-375 148 chr2L 7555216 7555231 chr2L 7555293 7555308 5 77 0.5 2.0 1.2 2.3 92 chr2L 7555216 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-375 149 chr2L 7563300 7563325 chr2L 7563376 7563401 5 76 2.0 4.0 3.0 1.2 101 chr2L 7563300 intron RapGAP1 - chr2L 7563350 intron RapGAP1 - chr2L 7563401 intron RapGAP1 - chr2L_5_7560001 chr2L_7560001 RAL-375 150 chr2L 7664045 7664065 chr2L 7664142 7664162 8 97 3.0 2.5 2.8 2.1 117 chr2L 7664045 intron Slob - chr2L 7664104 intron Slob - chr2L 7664162 intron Slob - chr2L_8_7660001 chr2L_7660001 RAL-375 151 chr2L 7766632 7766643 chr2L 7766708 7766715 5 75 6.0 0.0 3.0 1.2 83 chr2L 7766632 intergenic not near genes chr2L 7766674 intergenic not near genes chr2L 7766715 intergenic not near genes chr2L_5_7765001 chr2L_7765001 RAL-375 152 chr2L 7867567 7867600 chr2L 7867661 7867667 13 92 3.5 2.5 3.0 3.2 100 chr2L 7867567 intron Proc - chr2L 7867617 intron Proc - chr2L 7867667 intron Proc - chr2L_13_7865001 chr2L_7865001 RAL-375 153 chr2L 7922741 7922774 chr2L 7922822 7922855 12 81 6.5 5.5 6.0 1.7 114 chr2L 7922741 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922855 intron Snoo - chr2L_12_7920001 chr2L_7920001 RAL-375 154 chr2L 7924317 7924330 chr2L 7924582 7924593 4 264 5.0 2.0 3.5 0.9 276 chr2L 7924317 intron Snoo - chr2L 7924455 intron Snoo - chr2L 7924593 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-375 155 chr2L 7977093 7977107 chr2L 7984069 7984083 297 5 6975 1.0 8.0 4.5 0.9 6990 chr2L 7977093 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984083 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-375 156 chr2L 7984955 7984958 chr2L 7985083 7985086 4 128 3.0 1.0 2.0 1.3 131 chr2L 7984955 intron CG7231 + chr2L 7985020 intron CG7231 + chr2L 7985086 intron CG7231 + chr2L_4_7985001 chr2L_7985001 RAL-375 157 chr2L 7997030 7997064 chr2L 7997130 7997164 9 99 2.0 1.5 1.8 3.2 134 chr2L 7997030 intron CG7227 - chr2L 7997097 intron CG7227 - chr2L 7997164 intron CG7227 - chr2L_9_7995001 chr2L_7995001 RAL-375 158 chr2L 7999764 7999771 chr2L 7999841 7999848 4 77 0.0 3.0 1.5 1.6 84 chr2L 7999764 intron Wwox - chr2L 7999806 3` UTR Wwox - chr2L 7999848 exon Wwox - chr2L_4_7995001 chr2L_7995001 RAL-375 159 chr2L 8003042 8003062 chr2L 8003124 8003144 6 82 0.0 4.5 2.2 1.9 102 chr2L 8003042 intron Wwox - chr2L 8003093 intron Wwox - chr2L 8003144 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-375 160 chr2L 8013622 8013627 chr2L 8018827 8018832 copia 4 5205 3.5 0.0 1.8 1.4 5210 chr2L 8013622 intron Tg + chr2L 8016227 intron Tg + chr2L 8018832 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-375 161 chr2L 8018820 8018833 chr2L 8023604 8023617 Doc 5 4784 0.0 7.0 3.5 1.1 4797 chr2L 8018820 intron Tg + chr2L 8021218 intron Tg + chr2L 8023617 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-375 162 chr2L 8084208 8084232 chr2L 8084304 8084328 11 95 6.5 1.5 4.0 2.2 120 chr2L 8084208 intron Bsg + chr2L 8084268 intron Bsg + chr2L 8084328 intron Bsg + chr2L_11_8080001 chr2L_8080001 RAL-375 163 chr2L 8108921 8108936 chr2L 8109007 8109032 4 93 4.0 2.0 3.0 1.0 111 chr2L 8108921 3` UTR Bsg + chr2L 8108976 3` UTR Bsg + chr2L 8109032 3` UTR Bsg + chr2L_4_8105001 chr2L_8105001 RAL-375 164 chr2L 8167172 8167176 chr2L 8167241 8167265 4 85 4.0 2.5 3.2 1.0 93 chr2L 8167172 intron Piezo + chr2L 8167218 intron Piezo + chr2L 8167265 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-375 165 chr2L 8171279 8171301 chr2L 8171359 8171382 6 81 0.0 4.0 2.0 2.0 103 chr2L 8171279 intron Piezo + chr2L 8171330 intron Piezo + chr2L 8171382 intron Piezo + chr2L_6_8170001 chr2L_8170001 RAL-375 166 chr2L 8244734 8244748 chr2L 8244854 8244870 6 121 1.5 5.5 3.5 1.3 136 chr2L 8244734 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244870 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-375 167 chr2L 8286303 8286324 chr2L 8286390 8286410 8 84 5.0 7.0 6.0 1.1 107 chr2L 8286303 intron Btk29A - chr2L 8286356 intron Btk29A - chr2L 8286410 intron Btk29A - chr2L_8_8285001 chr2L_8285001 RAL-375 168 chr2L 8291256 8291268 chr2L 8291343 8291358 4 88 1.5 7.5 4.5 0.7 102 chr2L 8291256 intron Btk29A - chr2L 8291307 intron Btk29A - chr2L 8291358 intron Btk29A - chr2L_4_8290001 chr2L_8290001 RAL-375 169 chr2L 8336940 8336968 chr2L 8337016 8337033 5 76 0.0 3.0 1.5 2.0 93 chr2L 8336940 intergenic not near genes chr2L 8336986 intergenic not near genes chr2L 8337033 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-375 170 chr2L 8417953 8417968 chr2L 8418046 8418061 5 93 3.0 4.5 3.8 1.0 108 chr2L 8417953 intron Akap200 + chr2L 8418007 intron Akap200 + chr2L 8418061 intron Akap200 + chr2L_5_8415001 chr2L_8415001 RAL-375 171 chr2L 8452419 8452454 chr2L 8461589 8461625 roo 13 9170 5.0 3.0 4.0 2.6 9206 chr2L 8452419 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461625 intron fu12 - chr2L_13_8455001 chr2L_8455001 RAL-375 172 chr2L 8466456 8466487 chr2L 8466534 8466569 9 81 2.0 2.0 2.0 3.0 113 chr2L 8466456 3` UTR fu2 + chr2L 8466512 3` UTR fu2 + chr2L 8466569 3` UTR fu2 + chr2L_9_8465001 chr2L_8465001 RAL-375 173 chr2L 8510144 8510157 chr2L 8510233 8510243 6 88 4.5 1.5 3.0 1.5 99 chr2L 8510144 exon CG13096 - chr2L 8510194 intron CG13096 - chr2L 8510243 intron CG13096 - chr2L_6_8510001 chr2L_8510001 RAL-375 174 chr2L 8538170 8538178 chr2L 8538246 8538254 5 76 9.0 0.0 4.5 0.9 84 chr2L 8538170 intron CG17834 + chr2L 8538212 intron CG17834 + chr2L 8538254 intron CG17834 + chr2L_5_8535001 chr2L_8535001 RAL-375 175 chr2L 8588907 8588922 chr2L 8588998 8589013 4 91 1.0 4.0 2.5 1.1 106 chr2L 8588907 intron Sema-1a + chr2L 8588960 intron Sema-1a + chr2L 8589013 intron Sema-1a + chr2L_4_8585001 chr2L_8585001 RAL-375 176 chr2L 8604965 8604999 chr2L 8605063 8605097 17 98 4.5 4.0 4.2 3.3 132 chr2L 8604965 intron Sema-1a + chr2L 8605031 intron Sema-1a + chr2L 8605097 intron Sema-1a + chr2L_17_8605001 chr2L_8605001 RAL-375 177 chr2L 8612819 8612843 chr2L 8613044 8613068 16 224 3.5 3.5 3.5 3.6 249 chr2L 8612819 intron Sema-1a + chr2L 8612944 intron Sema-1a + chr2L 8613068 intron Sema-1a + chr2L_16_8610001 chr2L_8610001 RAL-375 178 chr2L 8723114 8723148 chr2L 8731491 8731525 Tirant 9 8377 2.5 0.0 1.2 4.1 8411 chr2L 8723114 intron raw - chr2L 8727320 intron raw - chr2L 8731525 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-375 179 chr2L 8784705 8784721 chr2L 8784816 8784832 11 111 4.0 4.0 4.0 2.2 127 chr2L 8784705 intergenic not near genes chr2L 8784768 intergenic not near genes chr2L 8784832 intergenic not near genes chr2L_11_8780001 chr2L_8780001 RAL-375 180 chr2L 8810772 8810799 chr2L 8810863 8810891 7 91 5.5 3.5 4.5 1.3 119 chr2L 8810772 intergenic not near genes chr2L 8810832 intergenic not near genes chr2L 8810891 intergenic not near genes chr2L_7_8810001 chr2L_8810001 RAL-375 181 chr2L 9000277 9000311 chr2L 9007787 9007817 roo 13 7510 4.5 2.0 3.2 3.1 7540 chr2L 9000277 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_13_9000001 chr2L_9000001 RAL-375 182 chr2L 9025828 9025852 chr2L 9025910 9025936 11 83 5.0 9.0 7.0 1.4 108 chr2L 9025828 intron,3` UTR CG9582 -,CR44352 - chr2L 9025882 intron,3` UTR CG9582 -,CR44352 - chr2L 9025936 intron,3` UTR CG9582 -,CR44352 - chr2L_11_9025001 chr2L_9025001 RAL-375 183 chr2L 9084337 9084340 chr2L 16217660 16217660 18 7133321 12.0 19.5 15.8 1.1 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_18_12650001 chr2L_12650001 RAL-375 184 chr2L 9097419 9097432 chr2L 9097514 9097527 6 95 3.0 1.0 2.0 2.0 108 chr2L 9097419 intergenic CG31609 + chr2L 9097473 intergenic CG31609 + chr2L 9097527 intergenic CG31609 + chr2L_6_9095001 chr2L_9095001 RAL-375 185 chr2L 9173073 9173091 chr2L 9173149 9173168 4 75 3.0 1.0 2.0 1.3 95 chr2L 9173073 intron tai + chr2L 9173120 intron tai + chr2L 9173168 intron tai + chr2L_4_9170001 chr2L_9170001 RAL-375 186 chr2L 9225412 9225429 chr2L 9225491 9225507 4 79 2.0 1.5 1.8 1.4 95 chr2L 9225412 intron tai + chr2L 9225460 intron tai + chr2L 9225507 intron tai + chr2L_4_9225001 chr2L_9225001 RAL-375 187 chr2L 9232359 9232361 chr2L 21012429 21012448 4 11780083 14.5 4.5 9.5 0.4 11780089 chr2L 9232359 intron tai + chr2L 15122404 intergenic not near genes chr2L 21012448 intron CG42238 - chr2L_4_15120001 chr2L_15120001 RAL-375 188 chr2L 9285027 9285046 chr2L 9285103 9285122 8 71 4.0 4.0 4.0 1.6 95 chr2L 9285027 intron Ggamma30A + chr2L 9285074 intron Ggamma30A + chr2L 9285122 intron Ggamma30A + chr2L_8_9285001 chr2L_9285001 RAL-375 189 chr2L 9287326 9287357 chr2L 9287421 9287452 13 95 4.5 3.5 4.0 2.6 126 chr2L 9287326 intron Ggamma30A + chr2L 9287389 intron Ggamma30A + chr2L 9287452 intron Ggamma30A + chr2L_13_9285001 chr2L_9285001 RAL-375 190 chr2L 9290790 9290799 chr2L 9290867 9290876 4 77 0.0 5.5 2.8 1.1 86 chr2L 9290790 intron Ggamma30A + chr2L 9290833 intron Ggamma30A + chr2L 9290876 intron Ggamma30A + chr2L_4_9290001 chr2L_9290001 RAL-375 191 chr2L 9297386 9297392 chr2L 9297463 9297469 7 77 8.0 3.0 5.5 1.1 83 chr2L 9297386 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297469 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-375 192 chr2L 9303468 9303492 chr2L 9303545 9303569 11 77 0.0 4.0 2.0 3.7 101 chr2L 9303468 intergenic not near genes chr2L 9303518 intergenic not near genes chr2L 9303569 intergenic not near genes chr2L_11_9300001 chr2L_9300001 RAL-375 193 chr2L 9362148 9362152 chr2L 9362226 9362229 4 78 4.5 2.5 3.5 0.9 81 chr2L 9362148 intergenic not near genes chr2L 9362188 intergenic not near genes chr2L 9362229 intergenic not near genes chr2L_4_9360001 chr2L_9360001 RAL-375 194 chr2L 9380245 9380252 chr2L 9380340 9380347 5 95 4.5 2.0 3.2 1.2 102 chr2L 9380245 exon Shawl - chr2L 9380296 intron Shawl - chr2L 9380347 intron Shawl - chr2L_5_9380001 chr2L_9380001 RAL-375 195 chr2L 9387249 9387266 chr2L 9387347 9387363 4 98 2.0 2.0 2.0 1.3 114 chr2L 9387249 intron Shawl - chr2L 9387306 intron Shawl - chr2L 9387363 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-375 196 chr2L 9393498 9393526 chr2L 9396465 9396493 jockey 11 2966 2.5 7.5 5.0 1.8 2995 chr2L 9393498 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396493 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-375 197 chr2L 9474795 9474810 chr2L 9474888 9474904 5 94 0.0 4.5 2.2 1.6 109 chr2L 9474795 intergenic not near genes chr2L 9474850 intergenic not near genes chr2L 9474904 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-375 198 chr2L 9775984 9776009 chr2L 9776066 9776091 10 82 5.0 3.5 4.2 1.9 107 chr2L 9775984 intergenic not near genes chr2L 9776038 intergenic not near genes chr2L 9776091 intergenic not near genes chr2L_10_9775001 chr2L_9775001 RAL-375 199 chr2L 9808404 9808427 chr2L 9808481 9808501 5 74 0.5 4.0 2.2 1.6 97 chr2L 9808404 intron nAChRalpha6 - chr2L 9808452 intron nAChRalpha6 - chr2L 9808501 intron nAChRalpha6 - chr2L_5_9805001 chr2L_9805001 RAL-375 200 chr2L 9892501 9892534 chr2L 9892577 9892610 9 76 1.5 2.5 2.0 3.0 109 chr2L 9892501 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_9_9890001 chr2L_9890001 RAL-375 201 chr2L 9973732 9973758 chr2L 9980846 9980877 HMS-Beagle 18 7116 10.5 4.0 7.2 2.2 7145 chr2L 9973732 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_18_9975001 chr2L_9975001 RAL-375 202 chr2L 9986349 9986377 chr2L 9986444 9986448 7 91 3.5 3.5 3.5 1.6 99 chr2L 9986349 intron bib + chr2L 9986398 intron bib + chr2L 9986448 intron bib + chr2L_7_9985001 chr2L_9985001 RAL-375 203 chr2L 10051734 10051753 chr2L 10051810 10051838 8 83 4.0 2.5 3.2 1.9 104 chr2L 10051734 5` UTR CR44874 + chr2L 10051786 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-375 204 chr2L 10078128 10078158 chr2L 10078286 10078316 8 157 5.0 4.5 4.8 1.4 188 chr2L 10078128 intron CG44153 - chr2L 10078222 intron CG44153 - chr2L 10078316 intron CG44153 - chr2L_8_10075001 chr2L_10075001 RAL-375 205 chr2L 10156327 10156349 chr2L 10163794 10163798 blood 8 7467 3.0 1.5 2.2 2.5 7471 chr2L 10156327 intron,3` UTR CG44153 -,CG4839 + chr2L 10160062 intron CG44153 - chr2L 10163798 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-375 206 chr2L 10474385 10474413 chr2L 10474466 10474494 9 80 1.5 2.0 1.8 3.2 109 chr2L 10474385 intergenic RluA-1 - chr2L 10474440 intergenic RluA-1 - chr2L 10474494 intergenic RluA-1 - chr2L_9_10470001 chr2L_10470001 RAL-375 207 chr2L 10478518 10478554 chr2L 10478601 10478637 11 77 2.0 2.5 2.2 3.4 119 chr2L 10478518 intron RluA-2 + chr2L 10478578 intron RluA-2 + chr2L 10478637 intron RluA-2 + chr2L_11_10475001 chr2L_10475001 RAL-375 208 chr2L 10500183 10500215 chr2L 10500367 10500399 7 184 3.5 5.0 4.2 1.3 216 chr2L 10500183 intron Myo31DF - chr2L 10500291 intron Myo31DF - chr2L 10500399 intron Myo31DF - chr2L_7_10500001 chr2L_10500001 RAL-375 209 chr2L 10563912 10563948 chr2L 10564005 10564041 6 93 0.5 1.0 0.8 3.3 129 chr2L 10563912 intron Trim9 + chr2L 10563976 intron Trim9 + chr2L 10564041 intron Trim9 + chr2L_6_10560001 chr2L_10560001 RAL-375 210 chr2L 10592853 10592872 chr2L 10600515 10600534 opus 7 7661 2.0 7.0 4.5 1.3 7681 chr2L 10592853 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600534 intron Trim9 + chr2L_7_10595001 chr2L_10595001 RAL-375 211 chr2L 10631250 10631277 chr2L 10631341 10631368 5 91 6.0 0.0 3.0 1.2 118 chr2L 10631250 intron CG7329 - chr2L 10631309 intron CG7329 - chr2L 10631368 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-375 212 chr2L 10634770 10634789 chr2L 10634850 10634867 4 80 1.5 3.0 2.2 1.2 97 chr2L 10634770 intron CG7329 - chr2L 10634818 intron CG7329 - chr2L 10634867 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-375 213 chr2L 10640640 10640672 chr2L 10640729 10640757 14 88 6.0 2.0 4.0 2.8 117 chr2L 10640640 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640757 exon CG31872 + chr2L_14_10640001 chr2L_10640001 RAL-375 214 chr2L 10656591 10656609 chr2L 10656667 10656685 9 76 1.5 2.0 1.8 3.2 94 chr2L 10656591 intergenic not near genes chr2L 10656638 intergenic not near genes chr2L 10656685 intergenic not near genes chr2L_9_10655001 chr2L_10655001 RAL-375 215 chr2L 10688542 10688574 chr2L 10688618 10688650 7 76 0.0 1.5 0.8 3.9 108 chr2L 10688542 intergenic CG7294 - chr2L 10688596 intergenic CG7294 - chr2L 10688650 intergenic CG7294 - chr2L_7_10685001 chr2L_10685001 RAL-375 216 chr2L 10834572 10834597 chr2L 10834652 10834677 9 79 0.5 3.0 1.8 3.2 105 chr2L 10834572 intron Nos - chr2L 10834624 intron Nos - chr2L 10834677 intron Nos - chr2L_9_10830001 chr2L_10830001 RAL-375 217 chr2L 10862849 10862869 chr2L 10864463 10864482 Rt1c 6 1612 6.0 3.0 4.5 1.1 1633 chr2L 10862849 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864482 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-375 218 chr2L 10946951 10946959 chr2L 10956159 10956174 roo 6 9214 5.5 6.5 6.0 0.9 9223 chr2L 10946951 intron dpr2 - chr2L 10951562 intron dpr2 - chr2L 10956174 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-375 219 chr2L 10946964 10946975 chr2L 10956158 10956190 roo 8 9211 2.5 6.0 4.2 1.5 9226 chr2L 10946964 intron dpr2 - chr2L 10951577 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-375 220 chr2L 11144553 11144573 chr2L 11144633 11144653 6 80 5.5 1.0 3.2 1.4 100 chr2L 11144553 intron Gyc32E - chr2L 11144603 intron,3` UTR Gyc32E -,CG31867 - chr2L 11144653 intron,3` UTR Gyc32E -,CG31867 - chr2L_6_11140001 chr2L_11140001 RAL-375 221 chr2L 11173950 11173954 chr2L 17719842 17719846 4 6545892 16.5 2.0 9.2 0.4 6545896 chr2L 11173950 intron Ca-beta - chr2L 14446898 intergenic not near genes chr2L 17719846 intron CadN - chr2L_4_14445001 chr2L_14445001 RAL-375 222 chr2L 11350232 11350245 chr2L 11350311 11350320 6 78 3.0 5.0 4.0 1.2 88 chr2L 11350232 intergenic not near genes chr2L 11350276 intergenic not near genes chr2L 11350320 intergenic not near genes chr2L_6_11350001 chr2L_11350001 RAL-375 223 chr2L 11357989 11358012 chr2L 11358067 11358071 9 76 2.5 2.0 2.2 2.8 82 chr2L 11357989 intergenic not near genes chr2L 11358030 intergenic not near genes chr2L 11358071 intergenic not near genes chr2L_9_11355001 chr2L_11355001 RAL-375 224 chr2L 11380610 11380643 chr2L 11380687 11380718 7 77 1.0 1.0 1.0 3.5 108 chr2L 11380610 intergenic not near genes chr2L 11380664 intergenic not near genes chr2L 11380718 intergenic not near genes chr2L_7_11380001 chr2L_11380001 RAL-375 225 chr2L 11397593 11397611 chr2L 11397703 11397721 5 110 2.5 0.0 1.2 2.3 128 chr2L 11397593 intergenic not near genes chr2L 11397657 intergenic not near genes chr2L 11397721 intergenic not near genes chr2L_5_11395001 chr2L_11395001 RAL-375 226 chr2L 11399525 11399533 chr2L 11399602 11399603 5 76 2.5 2.0 2.2 1.6 78 chr2L 11399525 intergenic not near genes chr2L 11399564 intergenic not near genes chr2L 11399603 intergenic not near genes chr2L_5_11395001 chr2L_11395001 RAL-375 227 chr2L 11432973 11433005 chr2L 11433070 11433099 9 96 2.5 4.0 3.2 2.1 126 chr2L 11432973 intergenic not near genes chr2L 11433036 intergenic not near genes chr2L 11433099 intergenic not near genes chr2L_9_11430001 chr2L_11430001 RAL-375 228 chr2L 11458950 11458974 chr2L 11459066 11459090 12 116 3.5 4.5 4.0 2.4 140 chr2L 11458950 intergenic not near genes chr2L 11459020 intergenic not near genes chr2L 11459090 intergenic not near genes chr2L_12_11455001 chr2L_11455001 RAL-375 229 chr2L 11491126 11491158 chr2L 11491207 11491239 5 77 1.0 2.0 1.5 2.0 113 chr2L 11491126 intergenic not near genes chr2L 11491182 intergenic not near genes chr2L 11491239 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-375 230 chr2L 11540598 11540613 chr2L 11548000 11548015 Tabor 4 7402 2.0 5.5 3.8 0.8 7417 chr2L 11540598 intergenic not near genes chr2L 11544306 intergenic not near genes chr2L 11548015 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-375 231 chr2L 11563642 11563669 chr2L 11568846 11568870 copia 10 5203 6.0 3.0 4.5 1.8 5228 chr2L 11563642 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-375 232 chr2L 11612664 11612698 chr2L 11612752 11612786 15 87 1.0 2.0 1.5 6.0 122 chr2L 11612664 intron kek2 + chr2L 11612725 intron kek2 + chr2L 11612786 intron kek2 + chr2L_15_11610001 chr2L_11610001 RAL-375 233 chr2L 11682971 11682997 chr2L 11683137 11683166 8 168 4.5 1.0 2.8 2.1 195 chr2L 11682971 intergenic not near genes chr2L 11683068 intergenic not near genes chr2L 11683166 intergenic not near genes chr2L_8_11680001 chr2L_11680001 RAL-375 234 chr2L 11702084 11702101 chr2L 11702159 11702177 4 76 3.5 10.5 7.0 0.5 93 chr2L 11702084 intergenic not near genes chr2L 11702130 intergenic not near genes chr2L 11702177 intergenic not near genes chr2L_4_11700001 chr2L_11700001 RAL-375 235 chr2L 11713509 11713534 chr2L 11720975 11721002 blood 10 7467 4.5 1.5 3.0 2.5 7493 chr2L 11713509 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-375 236 chr2L 11750326 11750341 chr2L 11750612 11750627 4 286 3.0 3.5 3.2 1.0 301 chr2L 11750326 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750627 intergenic not near genes chr2L_4_11750001 chr2L_11750001 RAL-375 237 chr2L 11781552 11781560 chr2L 11781750 11781758 6 198 4.5 3.0 3.8 1.2 206 chr2L 11781552 intergenic not near genes chr2L 11781655 intergenic not near genes chr2L 11781758 intergenic not near genes chr2L_6_11780001 chr2L_11780001 RAL-375 238 chr2L 11841366 11841379 chr2L 11841444 11841456 5 78 3.5 0.0 1.8 1.8 90 chr2L 11841366 intron Pde1c - chr2L 11841411 intron Pde1c - chr2L 11841456 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-375 239 chr2L 12067329 12067359 chr2L 12074381 12074411 297 9 7052 2.5 2.0 2.2 2.8 7082 chr2L 12067329 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_9_12070001 chr2L_12070001 RAL-375 240 chr2L 12152895 12152907 chr2L 12152969 12152987 6 79 7.0 0.0 3.5 1.3 92 chr2L 12152895 intron CG31760 + chr2L 12152941 intron CG31760 + chr2L 12152987 intron CG31760 + chr2L_6_12150001 chr2L_12150001 RAL-375 241 chr2L 12229080 12229113 chr2L 12229221 12229254 14 141 4.0 1.5 2.8 3.7 174 chr2L 12229080 intron aret + chr2L 12229167 intron aret + chr2L 12229254 intron aret + chr2L_14_12225001 chr2L_12225001 RAL-375 242 chr2L 12234035 12234066 chr2L 12234130 12234161 5 95 2.5 4.0 3.2 1.2 126 chr2L 12234035 intron aret + chr2L 12234098 intron aret + chr2L 12234161 intron aret + chr2L_5_12230001 chr2L_12230001 RAL-375 243 chr2L 12272165 12272195 chr2L 12272241 12272271 6 76 1.0 1.5 1.2 2.7 106 chr2L 12272165 intron aret + chr2L 12272218 intron aret + chr2L 12272271 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-375 244 chr2L 12293562 12293592 chr2L 12293659 12293689 13 97 4.0 5.0 4.5 2.4 127 chr2L 12293562 intron aret + chr2L 12293626 intron aret + chr2L 12293689 intron aret + chr2L_13_12290001 chr2L_12290001 RAL-375 245 chr2L 12305409 12305437 chr2L 12305497 12305509 13 86 5.0 6.0 5.5 2.0 100 chr2L 12305409 intron aret + chr2L 12305459 intron aret + chr2L 12305509 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-375 246 chr2L 12420972 12420992 chr2L 12421303 12421322 6 330 3.0 0.0 1.5 2.4 350 chr2L 12420972 intron vir-1 - chr2L 12421147 intron vir-1 - chr2L 12421322 intron vir-1 - chr2L_6_12420001 chr2L_12420001 RAL-375 247 chr2L 12474950 12474964 chr2L 12475128 12475142 7 178 5.0 2.5 3.8 1.5 192 chr2L 12474950 intron bun - chr2L 12475046 intron bun - chr2L 12475142 intron bun - chr2L_7_12475001 chr2L_12475001 RAL-375 248 chr2L 12487888 12487919 chr2L 12487968 12488000 11 81 4.5 4.0 4.2 2.1 112 chr2L 12487888 intron bun - chr2L 12487944 intron bun - chr2L 12488000 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-375 249 chr2L 12529251 12529448 chr2L 12529384 12529502 9 86 0.0 0.5 0.2 7.5 251 chr2L 12529251 intron bun - chr2L 12529376 intron bun - chr2L 12529502 intron bun - chr2L_9_12525001 chr2L_12525001 RAL-375 250 chr2L 12558322 12558353 chr2L 12565449 12565482 HMS-Beagle 11 7129 1.5 4.0 2.8 2.9 7160 chr2L 12558322 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_11_12560001 chr2L_12560001 RAL-375 251 chr2L 12638779 12638804 chr2L 12638879 12638907 9 101 5.5 0.5 3.0 2.2 128 chr2L 12638779 intron Ref2 - chr2L 12638843 intron Ref2 - chr2L 12638907 intron Ref2 - chr2L_9_12635001 chr2L_12635001 RAL-375 252 chr2L 12647709 12647735 chr2L 12647791 12647815 15 81 1.5 2.0 1.8 5.4 106 chr2L 12647709 intergenic not near genes chr2L 12647762 intergenic not near genes chr2L 12647815 intergenic not near genes chr2L_15_12645001 chr2L_12645001 RAL-375 253 chr2L 12680915 12680949 chr2L 12680995 12681013 7 77 2.5 2.0 2.2 2.2 98 chr2L 12680915 intron pdm2 + chr2L 12680964 intron pdm2 + chr2L 12681013 intron pdm2 + chr2L_7_12680001 chr2L_12680001 RAL-375 254 chr2L 12728921 12728945 chr2L 12729161 12729185 pogo 10 239 2.5 2.5 2.5 2.9 264 chr2L 12728921 intron MRP + chr2L 12729053 intron MRP + chr2L 12729185 exon MRP + chr2L_10_12725001 chr2L_12725001 RAL-375 255 chr2L 12731072 12731088 chr2L 12735839 12735853 F-element 4 4766 2.5 5.5 4.0 0.8 4781 chr2L 12731072 intron MRP + chr2L 12733462 intron MRP + chr2L 12735853 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-375 256 chr2L 12739172 12739205 chr2L 12743953 12743986 Doc 13 4781 3.5 7.5 5.5 2.0 4814 chr2L 12739172 exon MRP + chr2L 12741579 intron MRP + chr2L 12743986 exon MRP + chr2L_13_12740001 chr2L_12740001 RAL-375 257 chr2L 12751310 12751340 chr2L 12751393 12751421 9 83 0.0 2.0 1.0 4.5 111 chr2L 12751310 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_9_12750001 chr2L_12750001 RAL-375 258 chr2L 12756071 12756101 chr2L 12756151 12756181 12 79 1.0 1.5 1.2 5.5 110 chr2L 12756071 intergenic not near genes chr2L 12756126 intergenic not near genes chr2L 12756181 intergenic not near genes chr2L_12_12755001 chr2L_12755001 RAL-375 259 chr2L 12763863 12763872 chr2L 12764063 12764072 BS 5 200 0.0 1.5 0.8 2.8 209 chr2L 12763863 intergenic not near genes chr2L 12763968 intergenic not near genes chr2L 12764072 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-375 260 chr2L 12781796 12781804 chr2L 12789246 12789250 Quasimodo 4 7449 6.0 2.0 4.0 0.8 7454 chr2L 12781796 intergenic not near genes chr2L 12785523 intergenic not near genes chr2L 12789250 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-375 261 chr2L 12791607 12791640 chr2L 12795282 12795315 F-element 6 3672 2.5 6.0 4.2 1.2 3708 chr2L 12791607 intergenic not near genes chr2L 12793461 intergenic not near genes chr2L 12795315 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-375 262 chr2L 12835553 12835579 chr2L 12835662 12835688 4 109 2.0 1.0 1.5 1.6 135 chr2L 12835553 intergenic not near genes chr2L 12835620 intergenic not near genes chr2L 12835688 intergenic not near genes chr2L_4_12835001 chr2L_12835001 RAL-375 263 chr2L 12861694 12861730 chr2L 12863161 12863195 hobo 9 1465 4.0 2.0 3.0 2.2 1501 chr2L 12861694 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-375 264 chr2L 12905481 12905499 chr2L 12905560 12905583 4 83 1.5 2.5 2.0 1.3 102 chr2L 12905481 intergenic not near genes chr2L 12905532 intergenic not near genes chr2L 12905583 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-375 265 chr2L 12933848 12933880 chr2L 12941315 12941344 blood 10 7465 4.0 0.0 2.0 3.3 7496 chr2L 12933848 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941344 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-375 266 chr2L 12945974 12946009 chr2L 12946054 12946061 6 75 3.0 1.5 2.2 1.9 87 chr2L 12945974 intergenic not near genes chr2L 12946018 intergenic not near genes chr2L 12946061 intergenic not near genes chr2L_6_12945001 chr2L_12945001 RAL-375 267 chr2L 13035464 13035491 chr2L 13035670 13035701 12 209 2.5 2.0 2.2 3.8 237 chr2L 13035464 intron CG9932 - chr2L 13035582 intron CG9932 - chr2L 13035701 intron CG9932 - chr2L_12_13035001 chr2L_13035001 RAL-375 268 chr2L 13036249 13036275 chr2L 13036490 13036517 X-element 9 242 4.5 0.5 2.5 2.6 268 chr2L 13036249 intron CG9932 - chr2L 13036383 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_9_13035001 chr2L_13035001 RAL-375 269 chr2L 13056423 13056458 chr2L 13056579 13056614 15 156 0.5 3.0 1.8 5.4 191 chr2L 13056423 intron CG9932 - chr2L 13056518 intron CG9932 - chr2L 13056614 intron CG9932 - chr2L_15_13055001 chr2L_13055001 RAL-375 270 chr2L 13066158 13066177 chr2L 13066332 13066351 9 173 2.5 2.0 2.2 2.8 193 chr2L 13066158 intergenic not near genes chr2L 13066254 intergenic not near genes chr2L 13066351 intergenic not near genes chr2L_9_13065001 chr2L_13065001 RAL-375 271 chr2L 13082782 13082800 chr2L 13082860 13082879 6 78 1.0 0.0 0.5 4.0 97 chr2L 13082782 intergenic not near genes chr2L 13082830 intergenic not near genes chr2L 13082879 intergenic not near genes chr2L_6_13080001 chr2L_13080001 RAL-375 272 chr2L 13105890 13105917 chr2L 13105976 13106006 7 84 2.0 2.5 2.2 2.2 116 chr2L 13105890 intergenic not near genes chr2L 13105948 intergenic not near genes chr2L 13106006 intergenic not near genes chr2L_7_13105001 chr2L_13105001 RAL-375 273 chr2L 13185339 13185351 chr2L 13185403 13185430 7 76 2.0 3.5 2.8 1.8 91 chr2L 13185339 3` UTR CG16974 - chr2L 13185384 3` UTR CG16974 - chr2L 13185430 exon CG16974 - chr2L_7_13185001 chr2L_13185001 RAL-375 274 chr2L 13241950 13241955 chr2L 13244342 13244347 BS 4 2392 1.5 1.0 1.2 1.8 2397 chr2L 13241950 5` UTR CR45330 + chr2L 13243148 intron CR45330 + chr2L 13244347 5` UTR CR45330 + chr2L_4_13240001 chr2L_13240001 RAL-375 275 chr2L 13255271 13255293 chr2L 13255415 13255437 5 144 0.0 2.0 1.0 2.5 166 chr2L 13255271 intron CG31728 + chr2L 13255354 intron CG31728 + chr2L 13255437 intron CG31728 + chr2L_5_13255001 chr2L_13255001 RAL-375 276 chr2L 13266378 13266412 chr2L 13266466 13266500 10 87 0.5 3.5 2.0 3.3 122 chr2L 13266378 intron CG44085 + chr2L 13266439 intron CG44085 + chr2L 13266500 intron CG44085 + chr2L_10_13265001 chr2L_13265001 RAL-375 277 chr2L 13321898 13321933 chr2L 13321986 13322022 12 88 2.0 5.5 3.8 2.5 124 chr2L 13321898 intron CG43778 - chr2L 13321960 intron CG43778 - chr2L 13322022 intron CG43778 - chr2L_12_13320001 chr2L_13320001 RAL-375 278 chr2L 13405647 13405680 chr2L 13410444 13410477 Doc 17 4797 5.5 4.5 5.0 2.8 4830 chr2L 13405647 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_17_13405001 chr2L_13405001 RAL-375 279 chr2L 13418184 13418193 chr2L 13418512 13418521 5 328 7.5 0.5 4.0 1.0 337 chr2L 13418184 intron,intron CG42784 +,CG43850 + chr2L 13418352 intron,intron CG42784 +,CG43850 + chr2L 13418521 intron,intron CG42784 +,CG43850 + chr2L_5_13415001 chr2L_13415001 RAL-375 280 chr2L 13481453 13481476 chr2L 13482060 13482083 jockey 11 606 2.5 6.5 4.5 2.0 630 chr2L 13481453 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482083 intron CG42784 + chr2L_11_13480001 chr2L_13480001 RAL-375 281 chr2L 13484737 13484763 chr2L 13484820 13484846 6 83 4.5 5.5 5.0 1.0 109 chr2L 13484737 intron CG42784 + chr2L 13484792 intron CG42784 + chr2L 13484846 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-375 282 chr2L 13560405 13560421 chr2L 13565226 13565242 F-element 7 4821 7.5 2.0 4.8 1.2 4837 chr2L 13560405 intron kuz + chr2L 13562824 intron kuz + chr2L 13565242 intron kuz + chr2L_7_13560001 chr2L_13560001 RAL-375 283 chr2L 13618044 13618070 chr2L 13618135 13618155 11 90 4.5 3.5 4.0 2.2 111 chr2L 13618044 intron kuz + chr2L 13618100 intron kuz + chr2L 13618155 intron kuz + chr2L_11_13615001 chr2L_13615001 RAL-375 284 chr2L 13740069 13740095 chr2L 13740146 13740173 12 78 0.0 1.5 0.8 6.7 104 chr2L 13740069 intergenic not near genes chr2L 13740121 intergenic not near genes chr2L 13740173 intergenic not near genes chr2L_12_13740001 chr2L_13740001 RAL-375 285 chr2L 13754209 13754216 chr2L 13754289 13754296 5 80 0.0 6.0 3.0 1.2 87 chr2L 13754209 intron,intron CR44846 +,TM9SF4 + chr2L 13754252 intron,intron CR44846 +,TM9SF4 + chr2L 13754296 intron,intron CR44846 +,TM9SF4 + chr2L_5_13750001 chr2L_13750001 RAL-375 286 chr2L 13761798 13761825 chr2L 13762908 13762935 Doc 7 1111 6.5 1.0 3.8 1.5 1137 chr2L 13761798 intron TM9SF4 + chr2L 13762366 intron TM9SF4 + chr2L 13762935 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-375 287 chr2L 13802589 13802617 chr2L 13802673 13802703 7 85 3.5 2.0 2.8 1.8 114 chr2L 13802589 intergenic not near genes chr2L 13802646 intergenic not near genes chr2L 13802703 intergenic not near genes chr2L_7_13800001 chr2L_13800001 RAL-375 288 chr2L 13853083 13853115 chr2L 13862233 13862264 roo 11 9149 5.0 6.0 5.5 1.7 9181 chr2L 13853083 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862264 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-375 289 chr2L 13862327 13862345 chr2L 13862420 13862438 8 93 4.5 6.0 5.2 1.3 111 chr2L 13862327 intron CenG1A + chr2L 13862382 intron CenG1A + chr2L 13862438 intron CenG1A + chr2L_8_13860001 chr2L_13860001 RAL-375 290 chr2L 13944419 13944435 chr2L 13944539 13944554 4 120 0.0 1.5 0.8 2.2 135 chr2L 13944419 intron Ance-3 + chr2L 13944486 intron Ance-3 + chr2L 13944554 intron Ance-3 + chr2L_4_13940001 chr2L_13940001 RAL-375 291 chr2L 14005184 14005186 chr2L 14005262 14005264 4 78 7.5 0.5 4.0 0.8 80 chr2L 14005184 intergenic not near genes chr2L 14005224 intergenic not near genes chr2L 14005264 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-375 292 chr2L 14079163 14079186 chr2L 14079699 14079722 6 537 2.0 3.5 2.8 1.6 559 chr2L 14079163 intron nAChRalpha5 + chr2L 14079442 intron nAChRalpha5 + chr2L 14079722 intron nAChRalpha5 + chr2L_6_14075001 chr2L_14075001 RAL-375 293 chr2L 14222300 14222331 chr2L 14222387 14222417 14 84 3.0 2.0 2.5 4.0 117 chr2L 14222300 intron Dyrk2 - chr2L 14222358 intron Dyrk2 - chr2L 14222417 intron Dyrk2 - chr2L_14_14220001 chr2L_14220001 RAL-375 294 chr2L 14236239 14236256 chr2L 14236336 14236341 6 95 4.5 0.0 2.2 1.9 102 chr2L 14236239 5` UTR CR44728 + chr2L 14236290 5` UTR CR44728 + chr2L 14236341 intergenic CR44728 + chr2L_6_14235001 chr2L_14235001 RAL-375 295 chr2L 14374786 14374802 chr2L 14374877 14374893 8 91 0.0 4.0 2.0 2.7 107 chr2L 14374786 intergenic not near genes chr2L 14374840 intergenic not near genes chr2L 14374893 intergenic not near genes chr2L_8_14370001 chr2L_14370001 RAL-375 296 chr2L 14378647 14378678 chr2L 14378726 14378757 12 78 2.0 0.0 1.0 6.0 110 chr2L 14378647 3` UTR ppk - chr2L 14378702 3` UTR ppk - chr2L 14378757 3` UTR ppk - chr2L_12_14375001 chr2L_14375001 RAL-375 297 chr2L 14396201 14396232 chr2L 14398957 14398988 12 2756 17.0 21.0 19.0 0.6 2787 chr2L 14396201 intron elB - chr2L 14397594 intron elB - chr2L 14398988 intron elB - chr2L_12_14395001 chr2L_14395001 RAL-375 298 chr2L 14396028 14396050 chr2L 14399137 14399159 7 3109 21.5 25.5 23.5 0.3 3131 chr2L 14396028 intron elB - chr2L 14397594 intron elB - chr2L 14399159 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-375 299 chr2L 14462728 14462735 chr2L 14462815 14462822 4 87 3.5 0.0 1.8 1.4 94 chr2L 14462728 intergenic not near genes chr2L 14462775 intergenic not near genes chr2L 14462822 intergenic not near genes chr2L_4_14460001 chr2L_14460001 RAL-375 300 chr2L 14554167 14554197 chr2L 14554244 14554273 12 76 5.0 3.0 4.0 2.4 106 chr2L 14554167 intergenic not near genes chr2L 14554220 intergenic not near genes chr2L 14554273 intergenic not near genes chr2L_12_14550001 chr2L_14550001 RAL-375 301 chr2L 14555151 14555157 chr2L 14555230 14555235 4 79 2.0 1.5 1.8 1.4 84 chr2L 14555151 intergenic not near genes chr2L 14555193 intergenic not near genes chr2L 14555235 intergenic not near genes chr2L_4_14555001 chr2L_14555001 RAL-375 302 chr2L 14588386 14588418 chr2L 14588540 14588572 8 154 4.5 2.5 3.5 1.8 186 chr2L 14588386 intergenic CG42680 - chr2L 14588479 intergenic CG42680 - chr2L 14588572 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-375 303 chr2L 14642572 14642604 chr2L 14651735 14651767 roo 8 9161 3.0 4.0 3.5 1.8 9195 chr2L 14642572 intron osp - chr2L 14647170 intron osp - chr2L 14651767 intron osp - chr2L_8_14645001 chr2L_14645001 RAL-375 304 chr2L 14694265 14694288 chr2L 14694389 14694412 7 124 4.0 4.5 4.2 1.3 147 chr2L 14694265 intergenic not near genes chr2L 14694338 intergenic not near genes chr2L 14694412 intergenic not near genes chr2L_7_14690001 chr2L_14690001 RAL-375 305 chr2L 14721616 14721633 chr2L 14721694 14721711 15 78 5.0 2.0 3.5 3.3 95 chr2L 14721616 intergenic not near genes chr2L 14721664 intergenic not near genes chr2L 14721711 intergenic not near genes chr2L_15_14720001 chr2L_14720001 RAL-375 306 chr2L 14771839 14771865 chr2L 14771922 14771948 11 82 0.0 2.5 1.2 5.0 109 chr2L 14771839 intergenic not near genes chr2L 14771894 intergenic not near genes chr2L 14771948 intergenic not near genes chr2L_11_14770001 chr2L_14770001 RAL-375 307 chr2L 14772719 14772734 chr2L 14772818 14772833 5 99 2.0 3.0 2.5 1.4 114 chr2L 14772719 intergenic not near genes chr2L 14772776 intergenic not near genes chr2L 14772833 intergenic not near genes chr2L_5_14770001 chr2L_14770001 RAL-375 308 chr2L 14778810 14778841 chr2L 14779097 14779128 6 282 0.5 5.0 2.8 1.6 318 chr2L 14778810 intergenic not near genes chr2L 14778969 intergenic not near genes chr2L 14779128 intergenic not near genes chr2L_6_14775001 chr2L_14775001 RAL-375 309 chr2L 14803882 14803909 chr2L 14809085 14809110 copia 9 5201 2.5 5.0 3.8 1.9 5228 chr2L 14803882 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-375 310 chr2L 14839749 14839778 chr2L 14839824 14839854 11 76 2.0 2.0 2.0 3.7 105 chr2L 14839749 intergenic not near genes chr2L 14839802 intergenic not near genes chr2L 14839854 intergenic not near genes chr2L_11_14835001 chr2L_14835001 RAL-375 311 chr2L 14840979 14841009 chr2L 14841066 14841096 9 87 3.0 3.5 3.2 2.1 117 chr2L 14840979 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_9_14840001 chr2L_14840001 RAL-375 312 chr2L 14889957 14889981 chr2L 14890382 14890406 jockey 7 423 3.0 4.5 3.8 1.5 449 chr2L 14889957 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890406 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-375 313 chr2L 14901524 14901547 chr2L 14901623 14901645 6 99 5.0 3.5 4.2 1.2 121 chr2L 14901524 intergenic not near genes chr2L 14901584 intergenic not near genes chr2L 14901645 intergenic not near genes chr2L_6_14900001 chr2L_14900001 RAL-375 314 chr2L 14920028 14920061 chr2L 14920107 14920140 14 79 2.5 3.5 3.0 3.5 112 chr2L 14920028 intron CG42313 - chr2L 14920084 intron CG42313 - chr2L 14920140 intron CG42313 - chr2L_14_14920001 chr2L_14920001 RAL-375 315 chr2L 14984377 14984400 chr2L 14991976 14992000 opus 8 7600 3.5 3.0 3.2 1.9 7623 chr2L 14984377 intron mol - chr2L 14988188 intron mol - chr2L 14992000 intron mol - chr2L_8_14985001 chr2L_14985001 RAL-375 316 chr2L 15021443 15021474 chr2L 15021519 15021547 12 76 2.0 1.5 1.8 4.3 104 chr2L 15021443 intron GABA-B-R1 + chr2L 15021495 intron GABA-B-R1 + chr2L 15021547 intron GABA-B-R1 + chr2L_12_15020001 chr2L_15020001 RAL-375 317 chr2L 15026021 15026051 chr2L 15026102 15026132 14 79 3.5 5.5 4.5 2.5 111 chr2L 15026021 exon GABA-B-R1 + chr2L 15026076 intron GABA-B-R1 + chr2L 15026132 intron GABA-B-R1 + chr2L_14_15025001 chr2L_15025001 RAL-375 318 chr2L 15122604 15122801 chr2L 15122688 15122880 6 80 2.0 3.5 2.8 1.6 276 chr2L 15122604 intergenic not near genes chr2L 15122742 intergenic not near genes chr2L 15122880 intergenic not near genes chr2L_6_15120001 chr2L_15120001 RAL-375 319 chr2L 15185957 15185978 chr2L 15186218 15186239 4 261 2.5 3.0 2.8 1.1 282 chr2L 15185957 intron CG4168 - chr2L 15186098 intron CG4168 - chr2L 15186239 intron CG4168 - chr2L_4_15185001 chr2L_15185001 RAL-375 320 chr2L 15309455 15309482 chr2L 15309622 15309649 10 167 3.0 2.5 2.8 2.6 194 chr2L 15309455 intergenic not near genes chr2L 15309552 intergenic not near genes chr2L 15309649 intergenic not near genes chr2L_10_15305001 chr2L_15305001 RAL-375 321 chr2L 15446058 15446080 chr2L 15453525 15453549 blood 9 7468 3.0 3.0 3.0 2.2 7491 chr2L 15446058 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453549 intergenic not near genes chr2L_9_15445001 chr2L_15445001 RAL-375 322 chr2L 15514319 15514330 chr2L 15514403 15514414 4 84 5.5 9.5 7.5 0.5 95 chr2L 15514319 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514414 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-375 323 chr2L 15556554 15556561 chr2L 15556658 15556665 6 104 3.5 3.0 3.2 1.4 111 chr2L 15556554 intron kek3 + chr2L 15556610 intron kek3 + chr2L 15556665 intron kek3 + chr2L_6_15555001 chr2L_15555001 RAL-375 324 chr2L 15586412 15586440 chr2L 15593464 15593492 297 8 7052 3.5 2.0 2.8 2.1 7080 chr2L 15586412 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-375 325 chr2L 15790184 15790216 chr2L 15790259 15790292 14 74 2.0 3.5 2.8 3.7 108 chr2L 15790184 intergenic CG18109 + chr2L 15790238 intergenic CG18109 + chr2L 15790292 intergenic CG18109 + chr2L_14_15790001 chr2L_15790001 RAL-375 326 chr2L 15956030 15956060 chr2L 15957491 15957527 hobo 16 1466 3.0 0.5 1.8 5.7 1497 chr2L 15956030 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957527 intron beat-Ib - chr2L_16_15955001 chr2L_15955001 RAL-375 327 chr2L 15991074 15991099 chr2L 15991161 15991186 8 87 2.0 3.0 2.5 2.3 112 chr2L 15991074 intergenic not near genes chr2L 15991130 intergenic not near genes chr2L 15991186 intergenic not near genes chr2L_8_15990001 chr2L_15990001 RAL-375 328 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 15.5 19.5 17.5 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-375 329 chr2L 16141180 16141195 chr2L 16146371 16146402 copia 5 5204 4.0 3.5 3.8 1.0 5222 chr2L 16141180 intergenic not near genes chr2L 16143791 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-375 330 chr2L 16147191 16147214 chr2L 16147268 16147292 7 78 0.0 3.0 1.5 2.8 101 chr2L 16147191 intergenic not near genes chr2L 16147242 intergenic not near genes chr2L 16147292 intergenic not near genes chr2L_7_16145001 chr2L_16145001 RAL-375 331 chr2L 16202386 16202389 chr2L 16205517 16205520 4 3131 31.5 17.0 24.2 0.2 3134 chr2L 16202386 intergenic not near genes chr2L 16203953 intergenic CR44736 + chr2L 16205520 intergenic not near genes chr2L_4_16200001 chr2L_16200001 RAL-375 332 chr2L 7862104 7862104 chr2L 16217660 16217660 4 8355556 13.5 19.5 16.5 0.2 8355556 chr2L 7862104 intergenic not near genes chr2L 12039882 exon CG6766 - chr2L 16217660 intergenic not near genes chr2L_4_12035001 chr2L_12035001 RAL-375 333 chr2L 9084336 9084340 chr2L 16217660 16217660 19 7133321 12.0 19.5 15.8 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_19_12650001 chr2L_12650001 RAL-375 334 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 15.5 19.5 17.5 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-375 335 chr2L 16217660 16217660 chr2L 18622718 18622719 5 2405059 18.5 15.0 16.8 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_5_17420001 chr2L_17420001 RAL-375 336 chr2L 16254893 16254915 chr2L 16255152 16255174 11 257 1.5 3.0 2.2 3.4 281 chr2L 16254893 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255174 intron PRL-1 - chr2L_11_16255001 chr2L_16255001 RAL-375 337 chr2L 16280272 16280286 chr2L 16281426 16281457 1360 5 1168 2.0 3.5 2.8 1.3 1185 chr2L 16280272 intron crp - chr2L 16280864 intron crp - chr2L 16281457 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-375 338 chr2L 16375393 16375420 chr2L 16375484 16375509 4 88 3.0 0.0 1.5 1.6 116 chr2L 16375393 intergenic not near genes chr2L 16375451 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-375 339 chr2L 16394918 16394945 chr2L 16395004 16395010 5 82 0.5 2.5 1.5 2.0 92 chr2L 16394918 intergenic not near genes chr2L 16394964 intergenic not near genes chr2L 16395010 intergenic not near genes chr2L_5_16390001 chr2L_16390001 RAL-375 340 chr2L 16432500 16432518 chr2L 16432586 16432604 6 86 0.5 0.5 0.5 4.0 104 chr2L 16432500 intron CG5888 - chr2L 16432552 intron CG5888 - chr2L 16432604 intron CG5888 - chr2L_6_16430001 chr2L_16430001 RAL-375 341 chr2L 16507944 16507955 chr2L 16508032 16508041 6 88 0.0 7.0 3.5 1.3 97 chr2L 16507944 intergenic CG5953 -,Tpr2 + chr2L 16507992 intergenic CG5953 -,Tpr2 + chr2L 16508041 intergenic CG5953 -,Tpr2 + chr2L_6_16505001 chr2L_16505001 RAL-375 342 chr2L 16511962 16511977 chr2L 16519168 16519184 HMS-Beagle 6 7207 3.5 3.5 3.5 1.3 7222 chr2L 16511962 intron CG5953 - chr2L 16515573 intron CG5953 - chr2L 16519184 intron CG5953 - chr2L_6_16515001 chr2L_16515001 RAL-375 343 chr2L 16547186 16547218 chr2L 16547277 16547299 5 89 1.0 4.0 2.5 1.4 113 chr2L 16547186 intron CG42389 + chr2L 16547242 intron CG42389 + chr2L 16547299 intron CG42389 + chr2L_5_16545001 chr2L_16545001 RAL-375 344 chr2L 16550650 16550682 chr2L 16550726 16550758 15 76 3.0 3.5 3.2 3.6 108 chr2L 16550650 intron CG42389 + chr2L 16550704 intron CG42389 + chr2L 16550758 intron CG42389 + chr2L_15_16550001 chr2L_16550001 RAL-375 345 chr2L 16570843 16570862 chr2L 16570918 16570930 4 74 0.0 1.5 0.8 2.2 87 chr2L 16570843 intron CG42389 + chr2L 16570886 intron CG42389 + chr2L 16570930 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-375 346 chr2L 16573627 16573661 chr2L 16573716 16573750 8 89 4.5 2.0 3.2 1.9 123 chr2L 16573627 intron CG42389 + chr2L 16573688 intron CG42389 + chr2L 16573750 intron CG42389 + chr2L_8_16570001 chr2L_16570001 RAL-375 347 chr2L 16587451 16587481 chr2L 16587751 16587781 5 300 1.0 2.0 1.5 2.0 330 chr2L 16587451 intron CG42389 + chr2L 16587616 intron CG42389 + chr2L 16587781 intron CG42389 + chr2L_5_16585001 chr2L_16585001 RAL-375 348 chr2L 16592639 16592674 chr2L 16592822 16592857 11 180 1.5 1.5 1.5 4.4 218 chr2L 16592639 intron CG42389 + chr2L 16592748 intron CG42389 + chr2L 16592857 intron CG42389 + chr2L_11_16590001 chr2L_16590001 RAL-375 349 chr2L 16694132 16694164 chr2L 16694218 16694246 10 82 2.0 7.0 4.5 1.8 114 chr2L 16694132 intron grp + chr2L 16694189 intron grp + chr2L 16694246 intron grp + chr2L_10_16690001 chr2L_16690001 RAL-375 350 chr2L 16695267 16695284 chr2L 16695351 16695367 4 84 3.5 1.5 2.5 1.1 100 chr2L 16695267 intron grp + chr2L 16695317 intron grp + chr2L 16695367 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-375 351 chr2L 16697073 16697086 chr2L 16697266 16697279 5 193 1.5 2.5 2.0 1.7 206 chr2L 16697073 intron grp + chr2L 16697176 intron grp + chr2L 16697279 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-375 352 chr2L 16709088 16709104 chr2L 16709172 16709188 8 84 1.5 5.0 3.2 1.9 100 chr2L 16709088 intron CG31808 - chr2L 16709138 intron CG31808 - chr2L 16709188 intron CG31808 - chr2L_8_16705001 chr2L_16705001 RAL-375 353 chr2L 16958106 16958128 chr2L 16962894 16962915 Doc 8 4788 0.5 0.5 0.5 5.3 4809 chr2L 16958106 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962915 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-375 354 chr2L 16995522 16995551 chr2L 16995602 16995628 7 78 1.5 4.0 2.8 1.8 106 chr2L 16995522 intergenic not near genes chr2L 16995575 intergenic not near genes chr2L 16995628 intergenic not near genes chr2L_7_16995001 chr2L_16995001 RAL-375 355 chr2L 17000122 17000148 chr2L 17000244 17000270 6 120 2.0 1.5 1.8 2.1 148 chr2L 17000122 intergenic not near genes chr2L 17000196 intergenic not near genes chr2L 17000270 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-375 356 chr2L 17005413 17005427 chr2L 17005509 17005523 5 97 4.0 3.5 3.8 1.0 110 chr2L 17005413 intergenic not near genes chr2L 17005468 intergenic not near genes chr2L 17005523 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-375 357 chr2L 17032501 17032516 chr2L 17032586 17032600 5 85 2.5 3.0 2.8 1.3 99 chr2L 17032501 intergenic not near genes chr2L 17032550 intergenic not near genes chr2L 17032600 intergenic not near genes chr2L_5_17030001 chr2L_17030001 RAL-375 358 chr2L 17052417 17052443 chr2L 17052529 17052552 5 111 1.5 2.0 1.8 1.8 135 chr2L 17052417 intergenic not near genes chr2L 17052484 intergenic not near genes chr2L 17052552 intergenic not near genes chr2L_5_17050001 chr2L_17050001 RAL-375 359 chr2L 17087385 17087402 chr2L 17087501 17087520 4 118 2.0 4.5 3.2 1.0 135 chr2L 17087385 intergenic CG12620 + chr2L 17087452 intergenic CG12620 + chr2L 17087520 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-375 360 chr2L 17101900 17101915 chr2L 17101977 17101991 5 76 0.0 2.5 1.2 2.3 91 chr2L 17101900 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-375 361 chr2L 17113384 17113406 chr2L 17113468 17113490 15 83 1.0 2.5 1.8 5.4 106 chr2L 17113384 intergenic not near genes chr2L 17113437 intergenic not near genes chr2L 17113490 intergenic not near genes chr2L_15_17110001 chr2L_17110001 RAL-375 362 chr2L 17120845 17120874 chr2L 17120924 17120951 11 79 2.0 0.5 1.2 5.0 106 chr2L 17120845 intergenic not near genes chr2L 17120898 intergenic not near genes chr2L 17120951 intergenic not near genes chr2L_11_17120001 chr2L_17120001 RAL-375 363 chr2L 17158736 17158759 chr2L 17158838 17158861 5 102 1.5 1.0 1.2 2.3 125 chr2L 17158736 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158798 intron,intron CG34106 +,beat-IIIa + chr2L 17158861 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-375 364 chr2L 17167571 17167595 chr2L 17167812 17167816 pogo 5 237 2.0 2.5 2.2 1.6 245 chr2L 17167571 intron,intron CG34106 +,beat-IIIa + chr2L 17167694 intron,intron CG34106 +,beat-IIIa + chr2L 17167816 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-375 365 chr2L 17199161 17199187 chr2L 17200628 17200654 hobo 5 1467 1.5 2.0 1.8 1.8 1493 chr2L 17199161 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200654 intron beat-IIIc - chr2L_5_17195001 chr2L_17195001 RAL-375 366 chr2L 17273196 17273222 chr2L 17277979 17277985 F-element 7 4780 3.5 5.0 4.2 1.3 4789 chr2L 17273196 intergenic not near genes chr2L 17275590 intergenic not near genes chr2L 17277985 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-375 367 chr2L 17327910 17327929 chr2L 17327996 17328015 4 86 5.5 3.0 4.2 0.8 105 chr2L 17327910 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-375 368 chr2L 17360026 17360043 chr2L 17360204 17360221 7 178 2.0 0.0 1.0 3.5 195 chr2L 17360026 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360221 intergenic not near genes chr2L_7_17360001 chr2L_17360001 RAL-375 369 chr2L 17398000 17398028 chr2L 17398090 17398118 9 90 0.0 4.5 2.2 2.8 118 chr2L 17398000 intron CLIP-190 + chr2L 17398059 intron CLIP-190 + chr2L 17398118 intron CLIP-190 + chr2L_9_17395001 chr2L_17395001 RAL-375 370 chr2L 17425771 17425790 chr2L 17425898 17425917 8 127 1.0 4.5 2.8 2.1 146 chr2L 17425771 intron Dif - chr2L 17425844 intron Dif - chr2L 17425917 intron Dif - chr2L_8_17425001 chr2L_17425001 RAL-375 371 chr2L 17432019 17432048 chr2L 17432120 17432155 1360 9 106 0.0 0.5 0.2 7.5 136 chr2L 17432019 intron Dif - chr2L 17432087 intron Dif - chr2L 17432155 intron Dif - chr2L_9_17430001 chr2L_17430001 RAL-375 372 chr2L 17467607 17467628 chr2L 17467701 17467722 4 94 1.5 1.5 1.5 1.6 115 chr2L 17467607 intron BicD - chr2L 17467664 intron BicD - chr2L 17467722 intron BicD - chr2L_4_17465001 chr2L_17465001 RAL-375 373 chr2L 17511633 17511635 chr2L 17511775 17511777 4 142 5.0 0.0 2.5 1.1 144 chr2L 17511633 intron Dhc36C + chr2L 17511705 intron Dhc36C + chr2L 17511777 intron Dhc36C + chr2L_4_17510001 chr2L_17510001 RAL-375 374 chr2L 17565383 17565410 chr2L 17565474 17565501 7 91 1.0 0.0 0.5 4.7 118 chr2L 17565383 intergenic not near genes chr2L 17565442 intergenic not near genes chr2L 17565501 intergenic not near genes chr2L_7_17565001 chr2L_17565001 RAL-375 375 chr2L 17579882 17579912 chr2L 17579960 17579990 8 78 1.5 2.5 2.0 2.7 108 chr2L 17579882 5` UTR CR45698 + chr2L 17579936 5` UTR CR45698 + chr2L 17579990 5` UTR CR45698 + chr2L_8_17575001 chr2L_17575001 RAL-375 376 chr2L 17677650 17677673 chr2L 17677735 17677754 5 84 1.5 1.0 1.2 2.3 104 chr2L 17677650 intron CadN - chr2L 17677702 intron CadN - chr2L 17677754 intron CadN - chr2L_5_17675001 chr2L_17675001 RAL-375 377 chr2L 17701954 17701982 chr2L 17702044 17702073 6 91 3.5 7.0 5.2 1.0 119 chr2L 17701954 intron CadN - chr2L 17702014 intron CadN - chr2L 17702073 intron CadN - chr2L_6_17700001 chr2L_17700001 RAL-375 378 chr2L 17750925 17750948 chr2L 17751046 17751069 9 121 2.5 3.0 2.8 2.4 144 chr2L 17750925 intron CadN - chr2L 17750997 intron CadN - chr2L 17751069 intron CadN - chr2L_9_17750001 chr2L_17750001 RAL-375 379 chr2L 17765090 17765095 chr2L 17765228 17765233 4 138 2.0 2.5 2.2 1.2 143 chr2L 17765090 intron CadN - chr2L 17765162 intron CadN - chr2L 17765233 intron CadN - chr2L_4_17765001 chr2L_17765001 RAL-375 380 chr2L 17819920 17819938 chr2L 17825124 17825141 copia 6 5204 4.0 4.5 4.2 1.2 5221 chr2L 17819920 intron CadN2 - chr2L 17822530 intron CadN2 - chr2L 17825141 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-375 381 chr2L 17863630 17863641 chr2L 17863703 17863722 6 80 2.0 1.0 1.5 2.4 92 chr2L 17863630 intron CadN2 - chr2L 17863676 intron CadN2 - chr2L 17863722 intron CadN2 - chr2L_6_17860001 chr2L_17860001 RAL-375 382 chr2L 17879998 17880029 chr2L 17880084 17880116 7 86 3.5 4.0 3.8 1.5 118 chr2L 17879998 intergenic not near genes chr2L 17880057 intergenic not near genes chr2L 17880116 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-375 383 chr2L 17911962 17911989 chr2L 17914139 17914167 pogo 6 2178 4.0 5.5 4.8 1.0 2205 chr2L 17911962 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914167 intergenic CG43271 - chr2L_6_17910001 chr2L_17910001 RAL-375 384 chr2L 17951943 17951980 chr2L 17953410 17953447 hobo 8 1467 2.0 4.5 3.2 1.9 1504 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953447 intergenic not near genes chr2L_8_17950001 chr2L_17950001 RAL-375 385 chr2L 18051880 18051906 chr2L 18061027 18061053 roo 6 9147 4.5 4.5 4.5 1.1 9173 chr2L 18051880 intron rdo + chr2L 18056466 intron rdo + chr2L 18061053 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-375 386 chr2L 18078275 18078308 chr2L 18078360 18078379 13 83 3.5 2.5 3.0 3.2 104 chr2L 18078275 5` UTR Arr1 + chr2L 18078327 5` UTR Arr1 + chr2L 18078379 5` UTR Arr1 + chr2L_13_18075001 chr2L_18075001 RAL-375 387 chr2L 18079826 18079848 chr2L 18079912 18079934 6 86 1.5 3.5 2.5 1.7 108 chr2L 18079826 intron Arr1 + chr2L 18079880 intron Arr1 + chr2L 18079934 intron Arr1 + chr2L_6_18075001 chr2L_18075001 RAL-375 388 chr2L 18107782 18107814 chr2L 18107866 18107867 7 79 4.5 0.5 2.5 2.0 85 chr2L 18107782 intergenic not near genes chr2L 18107824 intergenic not near genes chr2L 18107867 intergenic not near genes chr2L_7_18105001 chr2L_18105001 RAL-375 389 chr2L 18254810 18254841 chr2L 18254910 18254941 10 100 3.0 2.5 2.8 2.6 131 chr2L 18254810 intron CG42750 - chr2L 18254876 intron CG42750 - chr2L 18254941 intron CG42750 - chr2L_10_18250001 chr2L_18250001 RAL-375 390 chr2L 18274049 18274075 chr2L 18274135 18274161 7 86 1.5 4.5 3.0 1.8 112 chr2L 18274049 intron CG42750 - chr2L 18274105 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-375 391 chr2L 18286419 18286426 chr2L 18286512 18286519 4 93 1.5 1.5 1.5 1.6 100 chr2L 18286419 intergenic not near genes chr2L 18286469 intergenic not near genes chr2L 18286519 intergenic not near genes chr2L_4_18285001 chr2L_18285001 RAL-375 392 chr2L 18291530 18291558 chr2L 18291627 18291656 6 98 2.5 0.0 1.2 2.7 126 chr2L 18291530 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291593 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291656 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_6_18290001 chr2L_18290001 RAL-375 393 chr2L 18333031 18333055 chr2L 18333122 18333156 12 100 0.5 1.0 0.8 6.7 125 chr2L 18333031 intron Fas3 + chr2L 18333094 intron Fas3 + chr2L 18333156 intron Fas3 + chr2L_12_18330001 chr2L_18330001 RAL-375 394 chr2L 18408028 18408055 chr2L 18412812 18412839 Doc 11 4784 2.5 0.0 1.2 5.0 4811 chr2L 18408028 intergenic not near genes chr2L 18410434 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_11_18410001 chr2L_18410001 RAL-375 395 chr2L 18745151 18745171 chr2L 18745238 18745256 5 86 2.0 3.0 2.5 1.4 105 chr2L 18745151 intergenic not near genes chr2L 18745204 intergenic not near genes chr2L 18745256 intergenic not near genes chr2L_5_18745001 chr2L_18745001 RAL-375 396 chr2L 18811420 18811434 chr2L 18811502 18811516 5 82 3.5 0.0 1.8 1.8 96 chr2L 18811420 intergenic CG10570 -,CG42502 - chr2L 18811468 intergenic CG10570 -,CG42502 - chr2L 18811516 intergenic not near genes chr2L_5_18810001 chr2L_18810001 RAL-375 397 chr2L 18811667 18811688 chr2L 18811876 18811897 5 209 4.0 1.0 2.5 1.4 230 chr2L 18811667 intergenic not near genes chr2L 18811782 intergenic not near genes chr2L 18811897 intergenic not near genes chr2L_5_18810001 chr2L_18810001 RAL-375 398 chr2L 18876879 18876882 chr2L 18876943 18876960 4 74 1.0 3.0 2.0 1.3 81 chr2L 18876879 intron tup - chr2L 18876920 intron tup - chr2L 18876960 intron tup - chr2L_4_18875001 chr2L_18875001 RAL-375 399 chr2L 18901486 18901518 chr2L 18901566 18901597 12 77 1.0 3.0 2.0 4.0 111 chr2L 18901486 intergenic not near genes chr2L 18901542 intergenic not near genes chr2L 18901597 intergenic not near genes chr2L_12_18900001 chr2L_18900001 RAL-375 400 chr2L 18926580 18926593 chr2L 18926687 18926700 5 107 2.0 1.0 1.5 2.0 120 chr2L 18926580 intron ssp3 - chr2L 18926640 intron ssp3 - chr2L 18926700 intron ssp3 - chr2L_5_18925001 chr2L_18925001 RAL-375 401 chr2L 19024097 19024097 chr2L 21768291 21768291 4 2744194 13.0 16.5 14.8 0.3 2744194 chr2L 19024097 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-375 402 chr2L 19035917 19035947 chr2L 19036007 19036037 7 86 1.5 3.5 2.5 2.0 120 chr2L 19035917 intron mib2 + chr2L 19035977 intron mib2 + chr2L 19036037 intron mib2 + chr2L_7_19035001 chr2L_19035001 RAL-375 403 chr2L 19043301 19043317 chr2L 19043392 19043408 6 90 3.5 2.5 3.0 1.5 107 chr2L 19043301 exon Catsup + chr2L 19043354 3` UTR Catsup + chr2L 19043408 3` UTR Catsup + chr2L_6_19040001 chr2L_19040001 RAL-375 404 chr2L 19121040 19121072 chr2L 19121118 19121149 15 77 2.0 1.0 1.5 6.0 109 chr2L 19121040 intergenic l(2)37Cc - chr2L 19121094 intergenic l(2)37Cc - chr2L 19121149 intergenic l(2)37Cc - chr2L_15_19120001 chr2L_19120001 RAL-375 405 chr2L 19121553 19121565 chr2L 19121634 19121645 4 80 2.0 7.0 4.5 0.7 92 chr2L 19121553 3` UTR l(2)37Cc - chr2L 19121599 3` UTR l(2)37Cc - chr2L 19121645 3` UTR l(2)37Cc - chr2L_4_19120001 chr2L_19120001 RAL-375 406 chr2L 19147269 19147288 chr2L 19147384 19147400 5 114 3.0 0.0 1.5 2.0 131 chr2L 19147269 intron brat + chr2L 19147334 intron brat + chr2L 19147400 intron brat + chr2L_5_19145001 chr2L_19145001 RAL-375 407 chr2L 19189968 19190005 chr2L 19190122 19190158 9 151 0.5 5.0 2.8 2.4 190 chr2L 19189968 intergenic pigeon +,drl + chr2L 19190063 intergenic pigeon +,drl + chr2L 19190158 intergenic drl +,pigeon + chr2L_9_19190001 chr2L_19190001 RAL-375 408 chr2L 19199667 19199695 chr2L 19199744 19199771 9 76 2.0 3.5 2.8 2.4 104 chr2L 19199667 intron drl + chr2L 19199719 intron drl + chr2L 19199771 intron drl + chr2L_9_19195001 chr2L_19195001 RAL-375 409 chr2L 19209614 19209649 chr2L 19209699 19209734 9 84 2.0 3.0 2.5 2.6 120 chr2L 19209614 intergenic not near genes chr2L 19209674 intergenic not near genes chr2L 19209734 intergenic not near genes chr2L_9_19205001 chr2L_19205001 RAL-375 410 chr2L 19231621 19231647 chr2L 19231872 19231898 8 250 2.5 0.5 1.5 3.2 277 chr2L 19231621 intergenic not near genes chr2L 19231760 intergenic not near genes chr2L 19231898 intergenic not near genes chr2L_8_19230001 chr2L_19230001 RAL-375 411 chr2L 19345012 19345050 chr2L 19357221 19357258 blood 11 12209 2.5 3.0 2.8 2.9 12246 chr2L 19345012 intron dnt - chr2L 19351135 intron dnt - chr2L 19357258 intron dnt - chr2L_11_19350001 chr2L_19350001 RAL-375 412 chr2L 19357548 19357569 chr2L 19357635 19357659 13 88 4.5 5.0 4.8 2.2 111 chr2L 19357548 intron dnt - chr2L 19357604 intron dnt - chr2L 19357659 intron dnt - chr2L_13_19355001 chr2L_19355001 RAL-375 413 chr2L 19380508 19380529 chr2L 19380588 19380609 6 80 2.0 5.0 3.5 1.3 101 chr2L 19380508 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-375 414 chr2L 19405621 19405638 chr2L 19405710 19405728 10 89 1.0 1.5 1.2 4.5 107 chr2L 19405621 intron Pax - chr2L 19405674 intron Pax - chr2L 19405728 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-375 415 chr2L 19407721 19407738 chr2L 19407918 19407929 6 196 4.5 3.5 4.0 1.2 208 chr2L 19407721 intron Pax - chr2L 19407825 intron Pax - chr2L 19407929 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-375 416 chr2L 19441068 19441072 chr2L 19441144 19441149 5 77 6.5 6.0 6.2 0.7 81 chr2L 19441068 intron CG10237 - chr2L 19441108 intron CG10237 - chr2L 19441149 intron CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-375 417 chr2L 19452439 19452463 chr2L 19452558 19452589 10 125 0.5 1.0 0.8 5.6 150 chr2L 19452439 intron Top2 - chr2L 19452514 intron Top2 - chr2L 19452589 5` UTR Top2 - chr2L_10_19450001 chr2L_19450001 RAL-375 418 chr2L 19462779 19462811 chr2L 19462961 19462993 7 180 1.0 6.0 3.5 1.6 214 chr2L 19462779 intergenic not near genes chr2L 19462886 intergenic not near genes chr2L 19462993 intergenic not near genes chr2L_7_19460001 chr2L_19460001 RAL-375 419 chr2L 19544601 19544625 chr2L 19544665 19544666 5 63 3.0 3.0 3.0 1.2 65 chr2L 19544601 exon ref(2)P + chr2L 19544634 exon ref(2)P + chr2L 19544666 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-375 420 chr2L 19562528 19562562 chr2L 19562608 19562642 11 80 2.5 3.0 2.8 2.9 114 chr2L 19562528 exon Tep5 + chr2L 19562585 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-375 421 chr2L 19566138 19566144 chr2L 19566214 19566220 4 76 6.0 2.5 4.2 0.8 82 chr2L 19566138 exon CG13077 + chr2L 19566179 exon CG13077 + chr2L 19566220 exon CG13077 + chr2L_4_19565001 chr2L_19565001 RAL-375 422 chr2L 19566151 19566158 chr2L 19566213 19566234 5 73 5.5 2.0 3.8 1.0 83 chr2L 19566151 exon CG13077 + chr2L 19566192 exon CG13077 + chr2L 19566234 exon CG13077 + chr2L_5_19565001 chr2L_19565001 RAL-375 423 chr2L 19601572 19601595 chr2L 19601648 19601672 13 77 1.0 2.0 1.5 5.2 100 chr2L 19601572 intron,intron Lar +,CR44978 - chr2L 19601622 intron,intron Lar +,CR44978 - chr2L 19601672 intron,intron Lar +,CR44978 - chr2L_13_19600001 chr2L_19600001 RAL-375 424 chr2L 19620112 19620130 chr2L 19621090 19621118 jockey 9 987 4.0 6.0 5.0 1.5 1006 chr2L 19620112 intron Lar + chr2L 19620615 intron Lar + chr2L 19621118 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-375 425 chr2L 19630982 19630993 chr2L 19631553 19631564 4 571 7.0 3.0 5.0 0.7 582 chr2L 19630982 intron Lar + chr2L 19631273 intron Lar + chr2L 19631564 intron Lar + chr2L_4_19630001 chr2L_19630001 RAL-375 426 chr2L 19638533 19638571 chr2L 19638621 19638659 18 87 2.5 3.5 3.0 4.5 126 chr2L 19638533 intron Lar + chr2L 19638596 intron Lar + chr2L 19638659 intron Lar + chr2L_18_19635001 chr2L_19635001 RAL-375 427 chr2L 19652575 19652603 chr2L 19674006 19674039 opus 10 21435 5.5 3.0 4.2 1.9 21464 chr2L 19652575 intron Lar + chr2L 19663307 intron Lar + chr2L 19674039 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-375 428 chr2L 19693815 19694081 chr2L 19693907 19694205 12 112 2.5 7.0 4.8 2.1 390 chr2L 19693815 intron Lar + chr2L 19694010 intron Lar + chr2L 19694205 intron Lar + chr2L_12_19690001 chr2L_19690001 RAL-375 429 chr2L 19698029 19698062 chr2L 19698105 19698108 9 72 1.0 2.0 1.5 3.6 79 chr2L 19698029 intron Lar + chr2L 19698068 intron Lar + chr2L 19698108 intron Lar + chr2L_9_19695001 chr2L_19695001 RAL-375 430 chr2L 19703536 19703569 chr2L 19712671 19712705 roo 9 9136 5.5 1.5 3.5 2.0 9169 chr2L 19703536 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-375 431 chr2L 19762808 19762840 chr2L 19763050 19763082 pogo 9 241 1.5 1.5 1.5 3.6 274 chr2L 19762808 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763082 intron fbp - chr2L_9_19760001 chr2L_19760001 RAL-375 432 chr2L 19795563 19795576 chr2L 19795640 19795652 4 74 6.5 3.0 4.8 0.7 89 chr2L 19795563 exon fs(2)ltoPP43 - chr2L 19795608 exon fs(2)ltoPP43 - chr2L 19795652 exon fs(2)ltoPP43 - chr2L_4_19795001 chr2L_19795001 RAL-375 433 chr2L 19824416 19824422 chr2L 19824499 19824505 8 83 1.5 5.0 3.2 1.9 89 chr2L 19824416 intron sick + chr2L 19824460 intron sick + chr2L 19824505 intron sick + chr2L_8_19820001 chr2L_19820001 RAL-375 434 chr2L 19871549 19871572 chr2L 19871635 19871659 8 86 1.0 4.0 2.5 2.3 110 chr2L 19871549 intron sick + chr2L 19871604 intron sick + chr2L 19871659 intron sick + chr2L_8_19870001 chr2L_19870001 RAL-375 435 chr2L 19893660 19893689 chr2L 19893743 19893773 12 84 1.5 3.5 2.5 3.4 113 chr2L 19893660 intron sick + chr2L 19893716 intron sick + chr2L 19893773 intron sick + chr2L_12_19890001 chr2L_19890001 RAL-375 436 chr2L 19901496 19901510 chr2L 19901597 19901613 5 102 5.5 5.5 5.5 0.8 117 chr2L 19901496 intron sick + chr2L 19901554 intron sick + chr2L 19901613 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-375 437 chr2L 19911290 19911325 chr2L 19911377 19911413 20 87 1.0 3.0 2.0 6.7 123 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911352 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_20_19910001 chr2L_19910001 RAL-375 438 chr2L 20005878 20005893 chr2L 20010947 20010969 flea 4 5074 3.5 3.5 3.5 0.9 5091 chr2L 20005878 intron CG43861 - chr2L 20008424 intron CG43861 - chr2L 20010969 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-375 439 chr2L 20011734 20011761 chr2L 20011817 20011844 4 83 0.0 0.5 0.2 3.3 110 chr2L 20011734 intron CG43861 - chr2L 20011789 intron CG43861 - chr2L 20011844 intron CG43861 - chr2L_4_20010001 chr2L_20010001 RAL-375 440 chr2L 20057063 20057070 chr2L 20057139 20057147 5 76 3.5 5.0 4.2 1.0 84 chr2L 20057063 intergenic not near genes chr2L 20057105 intergenic not near genes chr2L 20057147 intergenic not near genes chr2L_5_20055001 chr2L_20055001 RAL-375 441 chr2L 20122638 20122645 chr2L 20122728 20122735 4 90 2.5 2.5 2.5 1.1 97 chr2L 20122638 intergenic not near genes chr2L 20122686 intergenic not near genes chr2L 20122735 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-375 442 chr2L 20124325 20124342 chr2L 20124403 20124419 8 78 3.5 2.5 3.0 2.0 94 chr2L 20124325 intergenic not near genes chr2L 20124372 intergenic not near genes chr2L 20124419 intergenic not near genes chr2L_8_20120001 chr2L_20120001 RAL-375 443 chr2L 20272117 20272143 chr2L 20282828 20282854 copia 8 10711 4.5 4.5 4.5 1.5 10737 chr2L 20272117 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-375 444 chr2L 20296506 20296541 chr2L 20296587 20296622 14 81 0.0 3.0 1.5 5.6 116 chr2L 20296506 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_14_20295001 chr2L_20295001 RAL-375 445 chr2L 20303159 20303183 chr2L 20310627 20310651 blood 11 7468 0.5 0.5 0.5 7.3 7492 chr2L 20303159 intergenic not near genes chr2L 20306905 intergenic not near genes chr2L 20310651 intergenic not near genes chr2L_11_20305001 chr2L_20305001 RAL-375 446 chr2L 20310880 20310921 chr2L 20310959 20311000 9 75 0.5 2.5 1.5 3.6 120 chr2L 20310880 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20311000 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-375 447 chr2L 20367554 20367577 chr2L 20367690 20367713 12 135 3.5 4.5 4.0 2.4 159 chr2L 20367554 intergenic not near genes chr2L 20367634 intergenic not near genes chr2L 20367713 intergenic not near genes chr2L_12_20365001 chr2L_20365001 RAL-375 448 chr2L 20372855 20372868 chr2L 20372934 20372947 4 79 2.5 4.5 3.5 0.9 92 chr2L 20372855 exon Ugt37a1 - chr2L 20372901 exon Ugt37a1 - chr2L 20372947 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-375 449 chr2L 20493771 20493779 chr2L 20493856 20493862 5 85 7.0 4.0 5.5 0.8 91 chr2L 20493771 intergenic not near genes chr2L 20493816 intergenic not near genes chr2L 20493862 intergenic not near genes chr2L_5_20490001 chr2L_20490001 RAL-375 450 chr2L 20498688 20498706 chr2L 20498787 20498805 7 97 5.0 4.5 4.8 1.2 117 chr2L 20498688 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-375 451 chr2L 20576217 20576248 chr2L 20583685 20583716 blood 8 7465 5.5 3.5 4.5 1.5 7499 chr2L 20576217 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-375 452 chr2L 20623925 20623942 chr2L 20624002 20624020 4 78 1.5 5.5 3.5 0.9 95 chr2L 20623925 intron CR44909 - chr2L 20623972 intron CR44909 - chr2L 20624020 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-375 453 chr2L 20720417 20720429 chr2L 20720478 20720494 4 72 3.5 3.0 3.2 1.0 77 chr2L 20720417 intergenic not near genes chr2L 20720456 intergenic not near genes chr2L 20720494 intergenic not near genes chr2L_4_20720001 chr2L_20720001 RAL-375 454 chr2L 20818512 20818527 chr2L 20818593 20818606 6 79 2.5 1.5 2.0 2.0 94 chr2L 20818512 exon CheB38a - chr2L 20818559 intergenic CheB38a - chr2L 20818606 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-375 455 chr2L 20835816 20835834 chr2L 20836533 20836551 Quasimodo 6 717 2.0 4.0 3.0 1.5 735 chr2L 20835816 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836551 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-375 456 chr2L 20901475 20901488 chr2L 20902639 20902652 1360 4 1164 0.0 6.5 3.2 1.0 1177 chr2L 20901475 intron,intron CG43739 -,sky - chr2L 20902064 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-375 457 chr2L 20911026 20911057 chr2L 20911102 20911132 12 76 6.0 6.0 6.0 1.7 106 chr2L 20911026 intron,intron CG43739 -,sky - chr2L 20911079 intron,intron CG43739 -,sky - chr2L 20911132 intron,intron CG43739 -,sky - chr2L_12_20910001 chr2L_20910001 RAL-375 458 chr2L 20939102 20939128 chr2L 20939180 20939201 7 77 1.0 3.5 2.2 2.2 99 chr2L 20939102 intergenic not near genes chr2L 20939152 intergenic not near genes chr2L 20939201 intergenic not near genes chr2L_7_20935001 chr2L_20935001 RAL-375 459 chr2L 20968312 20968341 chr2L 20968473 20968502 12 160 2.0 3.5 2.8 3.2 190 chr2L 20968312 intron CG42238 - chr2L 20968407 intron CG42238 - chr2L 20968502 intron CG42238 - chr2L_12_20965001 chr2L_20965001 RAL-375 460 chr2L 20976646 20976678 chr2L 20981459 20981493 X-element 10 4814 7.5 4.0 5.8 1.5 4847 chr2L 20976646 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981493 intron CG42238 - chr2L_10_20975001 chr2L_20975001 RAL-375 461 chr2L 21020271 21020308 chr2L 21023948 21023985 NOF 11 3676 3.0 2.0 2.5 3.1 3714 chr2L 21020271 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-375 462 chr2L 21041136 21041166 chr2L 21049396 21049426 Tirant 8 8260 3.5 4.5 4.0 1.6 8290 chr2L 21041136 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-375 463 chr2L 21074919 21074950 chr2L 21075010 21075040 9 91 3.0 2.0 2.5 2.6 121 chr2L 21074919 intergenic tadr + chr2L 21074980 intergenic tadr + chr2L 21075040 intergenic tadr + chr2L_9_21070001 chr2L_21070001 RAL-375 464 chr2L 21110660 21110682 chr2L 21110745 21110767 7 85 4.0 2.0 3.0 1.8 107 chr2L 21110660 intron Nhe2 + chr2L 21110714 intron Nhe2 + chr2L 21110767 intron Nhe2 + chr2L_7_21110001 chr2L_21110001 RAL-375 465 chr2L 21144206 21144235 chr2L 21145822 21145844 7 1614 33.5 44.5 39.0 0.2 1638 chr2L 21144206 exon CG9253 + chr2L 21145025 exon CG9253 + chr2L 21145844 exon del - chr2L_7_21145001 chr2L_21145001 RAL-375 466 chr2L 21286603 21286630 chr2L 21286681 21286708 11 78 2.5 1.5 2.0 3.7 105 chr2L 21286603 exon Mio - chr2L 21286656 intron Mio - chr2L 21286708 intron Mio - chr2L_11_21285001 chr2L_21285001 RAL-375 467 chr2L 21597040 21597060 chr2L 21604784 21604804 roo 10 7743 2.5 4.5 3.5 2.2 7764 chr2L 21597040 intergenic not near genes chr2L 21600922 intergenic not near genes chr2L 21604804 intergenic not near genes chr2L_10_21600001 chr2L_21600001 RAL-375 468 chr2L 21691829 21691852 chr2L 21698297 21698321 Burdock 10 6468 2.0 0.0 1.0 5.0 6492 chr2L 21691829 intron CG31619 + chr2L 21695075 intron CG31619 + chr2L 21698321 intron CG31619 + chr2L_10_21695001 chr2L_21695001 RAL-375 469 chr2L 21788737 21788768 chr2L 21788815 21788846 9 78 0.5 4.5 2.5 2.6 109 chr2L 21788737 intron CG31612 - chr2L 21788792 intron CG31612 - chr2L 21788846 intron CG31612 - chr2L_9_21785001 chr2L_21785001 RAL-375 470 chr2L 21819330 21819357 chr2L 21819418 21819445 9 88 5.0 4.0 4.5 1.6 115 chr2L 21819330 intergenic CR44786 + chr2L 21819388 intergenic CR44786 + chr2L 21819445 intergenic CR44786 + chr2L_9_21815001 chr2L_21815001 RAL-375 471 chr2L 21852383 21852404 chr2L 21852697 21852719 9 315 1.0 3.0 2.0 3.0 336 chr2L 21852383 intergenic not near genes chr2L 21852551 intergenic not near genes chr2L 21852719 intergenic not near genes chr2L_9_21850001 chr2L_21850001 RAL-375 472 chr2L 21859316 21859351 chr2L 21859396 21859430 11 76 2.5 1.0 1.8 3.9 114 chr2L 21859316 intron CR44917 + chr2L 21859373 intron CR44917 + chr2L 21859430 intron CR44917 + chr2L_11_21855001 chr2L_21855001 RAL-375 473 chr2L 21950923 21950945 chr2L 21951340 21951360 10 416 4.5 16.5 10.5 0.9 437 chr2L 21950923 5` UTR CR45703 + chr2L 21951142 5` UTR CR45703 + chr2L 21951360 intergenic CR45703 + chr2L_10_21950001 chr2L_21950001 RAL-375 474 chr2L 21950992 21951016 chr2L 21951338 21951362 11 347 10.5 15.5 13.0 0.8 370 chr2L 21950992 5` UTR CR45703 + chr2L 21951177 intergenic CR45703 + chr2L 21951362 intergenic CR45703 + chr2L_11_21950001 chr2L_21950001 RAL-375 475 chr2L 21981680 21981705 chr2L 21990845 21990870 roo 9 9165 5.5 2.0 3.8 1.9 9190 chr2L 21981680 exon CG2528 - chr2L 21986275 intron CG2528 - chr2L 21990870 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-375 476 chr2L 22165522 22165548 chr2L 22165607 22165633 5 85 2.0 3.0 2.5 1.4 111 chr2L 22165522 3` UTR CG42748 + chr2L 22165578 3` UTR CG42748 + chr2L 22165633 3` UTR CG42748 + chr2L_5_22165001 chr2L_22165001 RAL-375 477 chr2L 22548921 22548945 chr2L 22550145 22550145 1360 8 1221 0.0 7.0 3.5 1.8 1224 chr2L 22548921 intergenic CG17490 + chr2L 22549533 intergenic not near genes chr2L 22550145 intergenic CG17493 + chr2L_8_22545001 chr2L_22545001 RAL-375 478 chr2L 22558138 22558168 chr2L 22558213 22558244 11 75 0.5 2.5 1.5 4.4 106 chr2L 22558138 intergenic not near genes chr2L 22558191 intergenic not near genes chr2L 22558244 intergenic not near genes chr2L_11_22555001 chr2L_22555001 RAL-375 479 chr2L 22558394 22558422 chr2L 22558705 22558733 9 311 0.5 3.5 2.0 3.0 339 chr2L 22558394 intergenic not near genes chr2L 22558564 intergenic not near genes chr2L 22558733 intergenic not near genes chr2L_9_22555001 chr2L_22555001 RAL-375 480 chr2L 22581971 22582001 chr2L 22583760 22583790 S-element 7 1789 1.5 2.0 1.8 2.5 1819 chr2L 22581971 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583790 intron CG17494 + chr2L_7_22580001 chr2L_22580001 RAL-375 481 chr2L 22719438 22719457 chr2L 22727561 22727579 gypsy2 4 8123 2.5 1.0 1.8 1.4 8141 chr2L 22719438 intron CG40006 - chr2L 22723508 intron CG40006 - chr2L 22727579 intron CG40006 - chr2L_4_22720001 chr2L_22720001 RAL-375 482 chr2L 22776420 22776448 chr2L 22778209 22778237 S-element 8 1789 2.0 4.5 3.2 1.9 1817 chr2L 22776420 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778237 intergenic not near genes chr2L_8_22775001 chr2L_22775001 RAL-375 483 chr2L 22941248 22941278 chr2L 22941329 22941360 8 82 2.5 5.0 3.8 1.7 112 chr2L 22941248 3` UTR lt + chr2L 22941304 3` UTR lt + chr2L 22941360 3` UTR lt + chr2L_8_22940001 chr2L_22940001 RAL-375 484 chr2L 23006503 23006531 chr2L 23007179 23007190 14 674 5.5 4.5 5.0 2.3 687 chr2L 23006503 intron Cht3 - chr2L 23006846 intron Cht3 - chr2L 23007190 intron Cht3 - chr2L_14_23005001 chr2L_23005001 RAL-375 485 chr2R 529322 529348 chr2R 537947 537957 Max-element 6 8621 2.5 1.0 1.8 2.1 8635 chr2R 529322 intron CG40378 + chr2R 533640 intron CG40378 + chr2R 537957 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-375 486 chr2R 1340077 1340079 chr2R 1340156 1340169 4 86 12.5 12.0 12.2 0.3 92 chr2R 1340077 intergenic not near genes chr2R 1340123 intergenic not near genes chr2R 1340169 intergenic not near genes chr2R_4_1340001 chr2R_1340001 RAL-375 487 chr2R 2498987 2499016 chr2R 2508134 2508162 roo 9 9146 3.0 4.5 3.8 1.9 9175 chr2R 2498987 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508162 intron MFS17 - chr2R_9_2500001 chr2R_2500001 RAL-375 488 chr2R 2591545 2591552 chr2R 2594221 2594228 roo 4 2676 17.0 12.5 14.8 0.3 2683 chr2R 2591545 intergenic not near genes chr2R 2592886 intergenic not near genes chr2R 2594228 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-375 489 chr2R 3144091 3144102 chr2R 3393369 3393380 Doc 4 249278 9.0 2.5 5.8 0.6 249289 chr2R 3144091 intron CG42596 + chr2R 3268736 intergenic not near genes chr2R 3393380 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-375 490 chr2R 3293743 3293760 chr2R 3293821 3293827 5 75 3.0 0.5 1.8 1.8 84 chr2R 3293743 intergenic not near genes chr2R 3293785 intergenic not near genes chr2R 3293827 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-375 491 chr2R 4547271 4547294 chr2R 4547682 4547709 5 414 3.5 1.5 2.5 1.4 438 chr2R 4547271 intron Stlk + chr2R 4547490 intron Stlk + chr2R 4547709 intron Stlk + chr2R_5_4545001 chr2R_4545001 RAL-375 492 chr2R 4580193 4580227 chr2R 4580820 4580854 11 627 1.5 4.0 2.8 2.9 661 chr2R 4580193 intergenic not near genes chr2R 4580524 intergenic not near genes chr2R 4580854 intergenic not near genes chr2R_11_4580001 chr2R_4580001 RAL-375 493 chr2R 4622952 4622987 chr2R 4624111 4624146 1360 7 1159 2.5 5.5 4.0 1.4 1194 chr2R 4622952 intergenic CR44101 - chr2R 4623549 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-375 494 chr2R 4656783 4656811 chr2R 4656985 4657021 5 206 21.5 23.5 22.5 0.2 238 chr2R 4656783 intergenic not near genes chr2R 4656902 intergenic not near genes chr2R 4657021 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-375 495 chr2R 4783249 4783270 chr2R 4783383 4783404 12 133 2.5 9.0 5.8 1.8 155 chr2R 4783249 intergenic not near genes chr2R 4783326 intergenic not near genes chr2R 4783404 intergenic not near genes chr2R_12_4780001 chr2R_4780001 RAL-375 496 chr2R 4838872 4838899 chr2R 4840395 4840408 transib2 7 1521 5.5 3.5 4.5 1.3 1536 chr2R 4838872 intergenic not near genes chr2R 4839640 intergenic not near genes chr2R 4840408 intergenic not near genes chr2R_7_4835001 chr2R_4835001 RAL-375 497 chr2R 4940959 4940967 chr2R 4943409 4943417 4 2450 17.5 23.5 20.5 0.2 2458 chr2R 4940959 intron Ir41a + chr2R 4942188 intron Ir41a + chr2R 4943417 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-375 498 chr2R 5009190 5009206 chr2R 5009264 5009283 5 75 2.5 3.0 2.8 1.3 93 chr2R 5009190 intron Ir41a + chr2R 5009236 intron Ir41a + chr2R 5009283 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-375 499 chr2R 5075222 5075244 chr2R 5075349 5075371 8 127 9.5 0.0 4.8 1.4 149 chr2R 5075222 intergenic not near genes chr2R 5075296 intergenic not near genes chr2R 5075371 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-375 500 chr2R 5075349 5075374 chr2R 5075765 5075790 9 416 0.0 3.0 1.5 3.6 441 chr2R 5075349 intergenic not near genes chr2R 5075570 intergenic not near genes chr2R 5075790 intergenic not near genes chr2R_9_5075001 chr2R_5075001 RAL-375 501 chr2R 5125248 5125276 chr2R 5125566 5125594 7 317 0.5 4.0 2.2 2.2 346 chr2R 5125248 intron gus - chr2R 5125421 intron gus - chr2R 5125594 intron gus - chr2R_7_5125001 chr2R_5125001 RAL-375 502 chr2R 5417996 5418027 chr2R 5420627 5420658 Burdock 14 2632 2.0 4.0 3.0 3.5 2662 chr2R 5417996 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420658 intron laccase2 + chr2R_14_5415001 chr2R_5415001 RAL-375 503 chr2R 5463250 5463271 chr2R 5468697 5468719 4 5447 32.0 19.5 25.8 0.1 5469 chr2R 5463250 intergenic not near genes chr2R 5465984 intergenic not near genes chr2R 5468719 intron CG30440 - chr2R_4_5465001 chr2R_5465001 RAL-375 504 chr2R 5472364 5472393 chr2R 5472459 5472481 6 93 4.0 2.0 3.0 1.5 117 chr2R 5472364 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472481 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-375 505 chr2R 5491713 5491749 chr2R 5491854 5491890 12 140 3.0 4.0 3.5 2.7 177 chr2R 5491713 intron CG30440 - chr2R 5491802 intron CG30440 - chr2R 5491890 intron CG30440 - chr2R_12_5490001 chr2R_5490001 RAL-375 506 chr2R 5509520 5509549 chr2R 5509616 5509645 11 96 3.0 4.5 3.8 2.3 125 chr2R 5509520 intron CG30438 + chr2R 5509582 intron CG30438 + chr2R 5509645 intron CG30438 + chr2R_11_5505001 chr2R_5505001 RAL-375 507 chr2R 5543197 5543223 chr2R 5547281 5547307 invader1 9 4084 0.0 4.0 2.0 3.0 4110 chr2R 5543197 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547307 intron CG30438 + chr2R_9_5545001 chr2R_5545001 RAL-375 508 chr2R 5712310 5712343 chr2R 5712387 5712420 9 76 2.5 3.0 2.8 2.4 110 chr2R 5712310 intron ap - chr2R 5712365 intron ap - chr2R 5712420 intron ap - chr2R_9_5710001 chr2R_5710001 RAL-375 509 chr2R 5772529 5772548 chr2R 5772622 5772642 4 92 1.0 4.5 2.8 1.1 113 chr2R 5772529 3` UTR Gp210 + chr2R 5772586 3` UTR Gp210 + chr2R 5772642 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-375 510 chr2R 5772842 5772858 chr2R 5772924 5772939 8 81 2.0 2.5 2.2 2.5 97 chr2R 5772842 3` UTR Gp210 + chr2R 5772890 3` UTR Gp210 + chr2R 5772939 3` UTR Gp210 + chr2R_8_5770001 chr2R_5770001 RAL-375 511 chr2R 5812161 5812168 chr2R 5812238 5812245 5 77 4.0 7.0 5.5 0.8 84 chr2R 5812161 intron dpr12 + chr2R 5812203 intron dpr12 + chr2R 5812245 intron dpr12 + chr2R_5_5810001 chr2R_5810001 RAL-375 512 chr2R 5833059 5833084 chr2R 5833132 5833142 4 72 1.5 3.0 2.2 1.2 83 chr2R 5833059 intron dpr12 + chr2R 5833100 intron dpr12 + chr2R 5833142 intron dpr12 + chr2R_4_5830001 chr2R_5830001 RAL-375 513 chr2R 5859976 5860014 chr2R 5860087 5860110 10 110 1.0 2.5 1.8 3.6 134 chr2R 5859976 3` UTR dpr12 + chr2R 5860043 3` UTR dpr12 + chr2R 5860110 3` UTR dpr12 + chr2R_10_5860001 chr2R_5860001 RAL-375 514 chr2R 5869277 5869304 chr2R 5874353 5874380 flea 11 5076 5.0 5.0 5.0 1.8 5103 chr2R 5869277 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_11_5870001 chr2R_5870001 RAL-375 515 chr2R 5878926 5878953 chr2R 5879006 5879033 7 80 1.0 4.5 2.8 1.8 107 chr2R 5878926 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879033 intergenic CG44438 - chr2R_7_5875001 chr2R_5875001 RAL-375 516 chr2R 5879351 5879383 chr2R 5879542 5879574 13 189 5.0 2.0 3.5 2.9 223 chr2R 5879351 3` UTR CG44438 - chr2R 5879462 3` UTR CG44438 - chr2R 5879574 exon CG44438 - chr2R_13_5875001 chr2R_5875001 RAL-375 517 chr2R 5902159 5902186 chr2R 5909718 5909745 17.6 6 7558 2.5 2.0 2.2 1.9 7586 chr2R 5902159 intron CG43366 + chr2R 5905952 intron CG43366 + chr2R 5909745 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-375 518 chr2R 5947069 5947083 chr2R 5947190 5947204 7 121 0.0 2.0 1.0 3.5 135 chr2R 5947069 intergenic not near genes chr2R 5947136 intergenic not near genes chr2R 5947204 intergenic not near genes chr2R_7_5945001 chr2R_5945001 RAL-375 519 chr2R 6033448 6033470 chr2R 6033532 6033555 6 85 2.5 2.0 2.2 1.9 107 chr2R 6033448 intron SCAP - chr2R 6033502 intron SCAP - chr2R 6033555 intron SCAP - chr2R_6_6030001 chr2R_6030001 RAL-375 520 chr2R 6096732 6096743 chr2R 6101910 6101940 BS 5 5192 3.5 2.5 3.0 1.2 5208 chr2R 6096732 intron EcR - chr2R 6099336 intron EcR - chr2R 6101940 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-375 521 chr2R 6129337 6129358 chr2R 6129414 6129436 9 77 3.5 4.0 3.8 1.9 99 chr2R 6129337 intron EcR - chr2R 6129386 intron EcR - chr2R 6129436 intron EcR - chr2R_9_6125001 chr2R_6125001 RAL-375 522 chr2R 6169416 6169424 chr2R 6169494 6169503 4 79 0.0 4.5 2.2 1.2 87 chr2R 6169416 intergenic EcR - chr2R 6169460 intergenic EcR - chr2R 6169503 intergenic EcR - chr2R_4_6165001 chr2R_6165001 RAL-375 523 chr2R 6178684 6178708 chr2R 6178771 6178795 7 87 3.0 2.0 2.5 2.0 111 chr2R 6178684 intergenic not near genes chr2R 6178740 intergenic not near genes chr2R 6178795 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-375 524 chr2R 6189490 6189515 chr2R 6189684 6189709 8 195 3.0 1.5 2.2 2.5 219 chr2R 6189490 intron Ptr - chr2R 6189600 intron Ptr - chr2R 6189709 intron Ptr - chr2R_8_6185001 chr2R_6185001 RAL-375 525 chr2R 6194690 6194704 chr2R 6194772 6194785 4 82 3.0 5.0 4.0 0.8 95 chr2R 6194690 intron Ptr - chr2R 6194738 intron Ptr - chr2R 6194785 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-375 526 chr2R 6522274 6522303 chr2R 6522376 6522405 11 102 6.5 5.5 6.0 1.6 131 chr2R 6522274 intron jing + chr2R 6522340 intron jing + chr2R 6522405 intron jing + chr2R_11_6520001 chr2R_6520001 RAL-375 527 chr2R 6579776 6579803 chr2R 6584859 6584888 flea 13 5085 2.5 1.5 2.0 4.3 5112 chr2R 6579776 intron jing + chr2R 6582332 intron jing + chr2R 6584888 intron jing + chr2R_13_6580001 chr2R_6580001 RAL-375 528 chr2R 6587504 6587529 chr2R 6587581 6587607 10 77 2.5 4.0 3.2 2.4 103 chr2R 6587504 intron jing + chr2R 6587556 intron jing + chr2R 6587607 intron jing + chr2R_10_6585001 chr2R_6585001 RAL-375 529 chr2R 6608770 6608792 chr2R 6608963 6608985 8 193 2.5 0.0 1.2 3.6 215 chr2R 6608770 intron jing + chr2R 6608878 intron jing + chr2R 6608985 intron jing + chr2R_8_6605001 chr2R_6605001 RAL-375 530 chr2R 6611733 6611751 chr2R 6611866 6611890 11 137 2.5 2.0 2.2 3.4 157 chr2R 6611733 intron jing + chr2R 6611812 intron jing + chr2R 6611890 intron jing + chr2R_11_6610001 chr2R_6610001 RAL-375 531 chr2R 6633196 6633224 chr2R 6633273 6633301 7 77 2.5 3.5 3.0 1.8 105 chr2R 6633196 intergenic Vha16-1 -,Trap1 - chr2R 6633248 intergenic Vha16-1 -,Trap1 - chr2R 6633301 intergenic Vha16-1 -,Trap1 - chr2R_7_6630001 chr2R_6630001 RAL-375 532 chr2R 6699593 6699618 chr2R 6699677 6699703 4 85 3.0 0.5 1.8 1.4 110 chr2R 6699593 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699703 intergenic Rab2 + chr2R_4_6695001 chr2R_6695001 RAL-375 533 chr2R 6712585 6712600 chr2R 6712682 6712697 5 97 4.0 4.5 4.2 1.0 112 chr2R 6712585 intron,intron CG3409 -,CG45092 - chr2R 6712641 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_5_6710001 chr2R_6710001 RAL-375 534 chr2R 6865693 6865718 chr2R 6865788 6865813 5 95 4.5 4.5 4.5 0.9 120 chr2R 6865693 intron coro - chr2R 6865753 intron coro - chr2R 6865813 intron coro - chr2R_5_6865001 chr2R_6865001 RAL-375 535 chr2R 6876224 6876245 chr2R 6876306 6876320 10 80 6.0 4.0 5.0 1.7 96 chr2R 6876224 intron,intron CR44169 +,Spn42Da - chr2R 6876272 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876320 5` UTR,intron CR44169 +,Spn42Da - chr2R_10_6875001 chr2R_6875001 RAL-375 536 chr2R 6881490 6881520 chr2R 6881582 6881612 5 92 1.0 1.0 1.0 2.5 122 chr2R 6881490 intron Spn42Dc + chr2R 6881551 intron Spn42Dc + chr2R 6881612 intron Spn42Dc + chr2R_5_6880001 chr2R_6880001 RAL-375 537 chr2R 6910189 6910213 chr2R 6910373 6910401 12 186 2.5 3.5 3.0 3.0 212 chr2R 6910189 intron CG30158 + chr2R 6910295 intron CG30158 + chr2R 6910401 intron CG30158 + chr2R_12_6910001 chr2R_6910001 RAL-375 538 chr2R 6925862 6925886 chr2R 6925941 6925965 9 78 1.0 3.0 2.0 3.0 103 chr2R 6925862 3` UTR mim - chr2R 6925914 3` UTR mim - chr2R 6925965 3` UTR mim - chr2R_9_6925001 chr2R_6925001 RAL-375 539 chr2R 6948083 6948109 chr2R 6948159 6948185 5 76 4.0 1.5 2.8 1.3 102 chr2R 6948083 intron,intron mim -,CheB42c - chr2R 6948134 intron,intron mim -,CheB42c - chr2R 6948185 intron,intron mim -,CheB42c - chr2R_5_6945001 chr2R_6945001 RAL-375 540 chr2R 6952161 6952169 chr2R 6959745 6959753 opus 4 7584 1.0 5.0 3.0 1.0 7592 chr2R 6952161 intron,intron mim -,CheB42c - chr2R 6955957 intron,intron mim -,CheB42c - chr2R 6959753 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-375 541 chr2R 7143627 7143661 chr2R 7143736 7143769 15 109 3.5 1.0 2.2 4.7 142 chr2R 7143627 intergenic not near genes chr2R 7143698 intergenic not near genes chr2R 7143769 intergenic not near genes chr2R_15_7140001 chr2R_7140001 RAL-375 542 chr2R 7160557 7160586 chr2R 7160631 7160661 7 77 2.5 5.0 3.8 1.5 104 chr2R 7160557 intron pk + chr2R 7160609 intron pk + chr2R 7160661 intron pk + chr2R_7_7160001 chr2R_7160001 RAL-375 543 chr2R 7166936 7166964 chr2R 7167014 7167043 7 79 3.0 0.5 1.8 2.5 107 chr2R 7166936 intron pk + chr2R 7166990 intron pk + chr2R 7167043 intron pk + chr2R_7_7165001 chr2R_7165001 RAL-375 544 chr2R 7196566 7196597 chr2R 7201340 7201372 F-element 12 4775 2.5 2.0 2.2 3.8 4806 chr2R 7196566 intron pk + chr2R 7198969 intron pk + chr2R 7201372 intron pk + chr2R_12_7195001 chr2R_7195001 RAL-375 545 chr2R 7209845 7209873 chr2R 7217593 7217621 roo 6 7748 2.5 3.5 3.0 1.5 7776 chr2R 7209845 intron pk + chr2R 7213733 intron pk + chr2R 7217621 intron pk + chr2R_6_7210001 chr2R_7210001 RAL-375 546 chr2R 7235821 7235832 chr2R 7240913 7240922 jockey 6 5090 3.0 1.5 2.2 1.9 5101 chr2R 7235821 intergenic not near genes chr2R 7238372 intergenic not near genes chr2R 7240922 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-375 547 chr2R 7235834 7235849 chr2R 7240906 7240941 jockey 7 5085 2.0 1.0 1.5 2.8 5107 chr2R 7235834 intergenic not near genes chr2R 7238388 intergenic not near genes chr2R 7240941 intergenic not near genes chr2R_7_7235001 chr2R_7235001 RAL-375 548 chr2R 7254807 7254841 chr2R 7254921 7254938 15 113 5.0 4.5 4.8 2.6 131 chr2R 7254807 5` UTR CR45280 + chr2R 7254872 5` UTR CR45280 + chr2R 7254938 5` UTR CR45280 + chr2R_15_7250001 chr2R_7250001 RAL-375 549 chr2R 7313121 7313143 chr2R 7313216 7313239 7 95 3.5 2.0 2.8 1.8 118 chr2R 7313121 3` UTR CG12164 + chr2R 7313180 3` UTR CG12164 + chr2R 7313239 3` UTR CG12164 + chr2R_7_7310001 chr2R_7310001 RAL-375 550 chr2R 7328134 7328153 chr2R 7328245 7328253 7 109 4.5 5.5 5.0 1.2 119 chr2R 7328134 intron,intron Dscam1 -,CR45129 + chr2R 7328194 intron,intron Dscam1 -,CR45129 + chr2R 7328253 intron,intron Dscam1 -,CR45129 + chr2R_7_7325001 chr2R_7325001 RAL-375 551 chr2R 7417915 7418168 chr2R 7417997 7418246 18 80 3.0 5.0 4.0 3.6 331 chr2R 7417915 intergenic not near genes chr2R 7418080 intergenic not near genes chr2R 7418246 intergenic not near genes chr2R_18_7415001 chr2R_7415001 RAL-375 552 chr2R 7434892 7434912 chr2R 7439193 7439213 Juan 5 4301 3.0 3.5 3.2 1.2 4321 chr2R 7434892 intergenic so + chr2R 7437052 intergenic not near genes chr2R 7439213 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-375 553 chr2R 7608413 7608423 chr2R 7613616 7613624 I-element 7 5202 6.5 3.5 5.0 1.2 5211 chr2R 7608413 intron CG1358 - chr2R 7611018 intron CG1358 - chr2R 7613624 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-375 554 chr2R 7608425 7608430 chr2R 7613613 7613633 I-element 4 5198 4.0 3.5 3.8 0.8 5208 chr2R 7608425 intron CG1358 - chr2R 7611029 intron CG1358 - chr2R 7613633 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-375 555 chr2R 7692015 7692033 chr2R 7692096 7692114 5 81 2.0 2.0 2.0 1.7 99 chr2R 7692015 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692114 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-375 556 chr2R 7815670 7815703 chr2R 7822139 7822171 Burdock 6 6468 2.5 2.0 2.2 1.9 6501 chr2R 7815670 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-375 557 chr2R 7869192 7869215 chr2R 7873976 7874001 Doc 7 4785 3.0 4.5 3.8 1.5 4809 chr2R 7869192 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874001 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-375 558 chr2R 8038523 8038544 chr2R 8038598 8038619 9 76 2.0 7.0 4.5 1.6 96 chr2R 8038523 intron Optix + chr2R 8038571 intron Optix + chr2R 8038619 intron Optix + chr2R_9_8035001 chr2R_8035001 RAL-375 559 chr2R 8089255 8089283 chr2R 8089341 8089369 10 86 2.5 1.0 1.8 3.6 114 chr2R 8089255 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089369 intergenic sut2 +,sut3 + chr2R_10_8085001 chr2R_8085001 RAL-375 560 chr2R 8152688 8152718 chr2R 8152773 8152803 8 84 1.0 3.5 2.2 2.5 115 chr2R 8152688 intron,intron Lpin -,kermit - chr2R 8152746 intron,intron Lpin -,kermit - chr2R 8152803 intron,intron Lpin -,kermit - chr2R_8_8150001 chr2R_8150001 RAL-375 561 chr2R 8157899 8157903 chr2R 8157987 8157991 6 88 5.0 3.0 4.0 1.2 92 chr2R 8157899 5` UTR CR44068 + chr2R 8157945 5` UTR CR44068 + chr2R 8157991 5` UTR CR44068 + chr2R_6_8155001 chr2R_8155001 RAL-375 562 chr2R 8160939 8160953 chr2R 8161029 8161043 1360 4 90 3.5 13.5 8.5 0.4 104 chr2R 8160939 intron CG8708 - chr2R 8160991 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-375 563 chr2R 8249560 8249594 chr2R 8249642 8249676 8 82 3.5 0.0 1.8 2.9 116 chr2R 8249560 5` UTR CG44439 - chr2R 8249618 intergenic CG44439 - chr2R 8249676 intergenic CG44439 - chr2R_8_8245001 chr2R_8245001 RAL-375 564 chr2R 8330861 8330892 chr2R 8331347 8331378 roo 13 485 4.0 3.0 3.5 2.9 517 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-375 565 chr2R 8398208 8398243 chr2R 8402989 8403024 Doc 6 4779 2.5 0.0 1.2 2.7 4816 chr2R 8398208 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-375 566 chr2R 8483967 8483985 chr2R 8484043 8484061 4 76 3.5 2.0 2.8 1.1 94 chr2R 8483967 intron mtt - chr2R 8484014 intron mtt - chr2R 8484061 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-375 567 chr2R 8588738 8588751 chr2R 8588970 8588991 9 234 28.5 19.0 23.8 0.4 253 chr2R 8588738 intergenic not near genes chr2R 8588864 intergenic not near genes chr2R 8588991 intergenic not near genes chr2R_9_8585001 chr2R_8585001 RAL-375 568 chr2R 8722773 8722785 chr2R 8723003 8723026 pogo 7 238 2.5 3.0 2.8 1.8 253 chr2R 8722773 intron CG14767 - chr2R 8722900 intron CG14767 - chr2R 8723026 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-375 569 chr2R 8777909 8777929 chr2R 8784100 8784120 diver 10 6191 3.0 3.5 3.2 2.4 6211 chr2R 8777909 intergenic not near genes chr2R 8781014 intergenic not near genes chr2R 8784120 intergenic not near genes chr2R_10_8780001 chr2R_8780001 RAL-375 570 chr2R 8803392 8803408 chr2R 8803483 8803500 5 91 4.5 3.0 3.8 1.0 108 chr2R 8803392 intron sns + chr2R 8803446 intron sns + chr2R 8803500 intron sns + chr2R_5_8800001 chr2R_8800001 RAL-375 571 chr2R 8808291 8808311 chr2R 8808370 8808390 5 79 1.5 3.0 2.2 1.6 99 chr2R 8808291 intron sns + chr2R 8808340 intron sns + chr2R 8808390 intron sns + chr2R_5_8805001 chr2R_8805001 RAL-375 572 chr2R 8941581 8941601 chr2R 8941674 8941694 5 93 1.0 7.5 4.2 1.0 113 chr2R 8941581 intergenic CR44273 +,CG13748 + chr2R 8941638 5` UTR CR44273 + chr2R 8941694 5` UTR CR44273 + chr2R_5_8940001 chr2R_8940001 RAL-375 573 chr2R 8966151 8966177 chr2R 8966241 8966267 12 90 3.5 4.5 4.0 2.4 116 chr2R 8966151 intron CG8216 - chr2R 8966209 intron CG8216 - chr2R 8966267 intron CG8216 - chr2R_12_8965001 chr2R_8965001 RAL-375 574 chr2R 9047423 9047436 chr2R 9047518 9047531 5 95 5.0 3.5 4.2 1.0 108 chr2R 9047423 intron CG13743 - chr2R 9047477 intron CG13743 - chr2R 9047531 intron CG13743 - chr2R_5_9045001 chr2R_9045001 RAL-375 575 chr2R 9076137 9076149 chr2R 9076213 9076225 4 76 3.5 3.0 3.2 1.0 88 chr2R 9076137 intron ana + chr2R 9076181 intron ana + chr2R 9076225 intron ana + chr2R_4_9075001 chr2R_9075001 RAL-375 576 chr2R 9151311 9151333 chr2R 9157781 9157802 Burdock 11 6470 3.5 5.5 4.5 2.0 6491 chr2R 9151311 3` UTR CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157802 intergenic CG8008 - chr2R_11_9150001 chr2R_9150001 RAL-375 577 chr2R 9161971 9162005 chr2R 9162056 9162089 11 85 3.5 1.0 2.2 3.4 118 chr2R 9161971 5` UTR CR44283 + chr2R 9162030 intergenic CG8046 -,CR44283 + chr2R 9162089 3` UTR CG8046 - chr2R_11_9160001 chr2R_9160001 RAL-375 578 chr2R 9191904 9191938 chr2R 9191990 9192023 10 86 5.0 2.0 3.5 2.2 119 chr2R 9191904 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191964 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192023 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_10_9190001 chr2R_9190001 RAL-375 579 chr2R 9212691 9212720 chr2R 9213177 9213206 roo 7 485 6.5 4.0 5.2 1.1 515 chr2R 9212691 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-375 580 chr2R 9302733 9302765 chr2R 9302819 9302851 13 86 4.0 2.0 3.0 3.2 118 chr2R 9302733 3` UTR Drep-2 + chr2R 9302792 3` UTR Drep-2 + chr2R 9302851 3` UTR Myd88 - chr2R_13_9300001 chr2R_9300001 RAL-375 581 chr2R 9368127 9368151 chr2R 9368203 9368227 6 76 3.5 0.0 1.8 2.1 100 chr2R 9368127 intron CG13954 - chr2R 9368177 intron CG13954 - chr2R 9368227 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-375 582 chr2R 9408228 9408254 chr2R 9408311 9408336 10 83 4.0 2.5 3.2 2.4 108 chr2R 9408228 intron wun - chr2R 9408282 intron wun - chr2R 9408336 intron wun - chr2R_10_9405001 chr2R_9405001 RAL-375 583 chr2R 9480076 9480103 chr2R 9490607 9490634 roo 8 10531 4.0 2.5 3.2 1.9 10558 chr2R 9480076 intergenic not near genes chr2R 9485355 intergenic not near genes chr2R 9490634 intergenic not near genes chr2R_8_9485001 chr2R_9485001 RAL-375 584 chr2R 9509436 9509449 chr2R 9509520 9509533 4 83 3.5 6.0 4.8 0.7 97 chr2R 9509436 intron brp + chr2R 9509484 intron brp + chr2R 9509533 intron brp + chr2R_4_9505001 chr2R_9505001 RAL-375 585 chr2R 9510665 9510696 chr2R 9510781 9510812 9 116 2.5 3.5 3.0 2.2 147 chr2R 9510665 intron brp + chr2R 9510738 intron brp + chr2R 9510812 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-375 586 chr2R 9541623 9541636 chr2R 9541700 9541713 7 76 0.0 2.5 1.2 3.2 90 chr2R 9541623 intergenic brp +,CG1888 - chr2R 9541668 intergenic brp +,CG1888 - chr2R 9541713 intergenic brp +,CG1888 - chr2R_7_9540001 chr2R_9540001 RAL-375 587 chr2R 9726611 9726647 chr2R 9734162 9734198 17.6 6 7551 2.0 3.5 2.8 1.6 7587 chr2R 9726611 intron sqa - chr2R 9730404 intron sqa - chr2R 9734198 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-375 588 chr2R 9807456 9807462 chr2R 9807600 9807606 4 144 0.0 11.5 5.8 0.6 150 chr2R 9807456 intergenic not near genes chr2R 9807531 intergenic not near genes chr2R 9807606 intergenic not near genes chr2R_4_9805001 chr2R_9805001 RAL-375 589 chr2R 9817434 9817454 chr2R 9817513 9817533 8 79 2.5 7.5 5.0 1.3 99 chr2R 9817434 intron,exon CG1648 -,lectin-46Ca + chr2R 9817484 intron,intron CG1648 -,lectin-46Ca + chr2R 9817533 intron,intron CG1648 -,lectin-46Ca + chr2R_8_9815001 chr2R_9815001 RAL-375 590 chr2R 9869675 9869695 chr2R 9869786 9869806 12 111 4.0 5.5 4.8 2.1 131 chr2R 9869675 intron cbx - chr2R 9869740 intron cbx - chr2R 9869806 intron cbx - chr2R_12_9865001 chr2R_9865001 RAL-375 591 chr2R 9928420 9928449 chr2R 9928544 9928574 7 125 1.5 1.5 1.5 2.8 154 chr2R 9928420 intron Mef2 - chr2R 9928497 intron Mef2 - chr2R 9928574 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-375 592 chr2R 9935031 9935059 chr2R 9935113 9935140 7 82 1.0 2.0 1.5 2.8 109 chr2R 9935031 intron Mef2 - chr2R 9935086 intron Mef2 - chr2R 9935140 intron Mef2 - chr2R_7_9935001 chr2R_9935001 RAL-375 593 chr2R 9945438 9945469 chr2R 9945634 9945664 BS 6 196 3.0 1.0 2.0 2.0 226 chr2R 9945438 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-375 594 chr2R 9948379 9948409 chr2R 9948455 9948483 7 75 6.5 1.5 4.0 1.4 104 chr2R 9948379 intron Mef2 - chr2R 9948431 intron Mef2 - chr2R 9948483 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-375 595 chr2R 9956063 9956097 chr2R 9956140 9956173 15 76 4.5 5.0 4.8 2.6 110 chr2R 9956063 intron Mef2 - chr2R 9956118 intron Mef2 - chr2R 9956173 intron Mef2 - chr2R_15_9955001 chr2R_9955001 RAL-375 596 chr2R 10004602 10004625 chr2R 10004687 10004724 12 95 4.0 2.0 3.0 3.0 122 chr2R 10004602 intron Pka-R2 - chr2R 10004663 intron Pka-R2 - chr2R 10004724 intron Pka-R2 - chr2R_12_10000001 chr2R_10000001 RAL-375 597 chr2R 10005854 10005883 chr2R 10007019 10007048 1360 19 1164 4.5 7.0 5.8 2.8 1194 chr2R 10005854 intron Pka-R2 - chr2R 10006451 intron Pka-R2 - chr2R 10007048 intron Pka-R2 - chr2R_19_10005001 chr2R_10005001 RAL-375 598 chr2R 10020858 10020877 chr2R 10020934 10020953 9 74 1.0 3.5 2.2 2.8 95 chr2R 10020858 intron Pka-R2 - chr2R 10020906 intron Pka-R2 - chr2R 10020953 intron Pka-R2 - chr2R_9_10020001 chr2R_10020001 RAL-375 599 chr2R 10107182 10107207 chr2R 10107268 10107293 5 86 5.5 2.5 4.0 1.0 111 chr2R 10107182 intron 14-3-3zeta + chr2R 10107238 intron 14-3-3zeta + chr2R 10107293 intron 14-3-3zeta + chr2R_5_10105001 chr2R_10105001 RAL-375 600 chr2R 10122741 10122751 chr2R 10122951 10122961 7 210 2.5 2.5 2.5 2.0 220 chr2R 10122741 intergenic Ccs - chr2R 10122851 intergenic Ccs - chr2R 10122961 intergenic Ccs - chr2R_7_10120001 chr2R_10120001 RAL-375 601 chr2R 10171113 10171146 chr2R 10171197 10171230 11 83 2.5 2.5 2.5 3.1 117 chr2R 10171113 intron KCNQ - chr2R 10171172 intron KCNQ - chr2R 10171230 intron KCNQ - chr2R_11_10170001 chr2R_10170001 RAL-375 602 chr2R 10176897 10176909 chr2R 10186064 10186075 roo 5 9167 2.5 4.5 3.5 1.1 9178 chr2R 10176897 intron KCNQ - chr2R 10181486 intron KCNQ - chr2R 10186075 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-375 603 chr2R 10203652 10203658 chr2R 10203737 10203743 4 85 4.0 2.5 3.2 1.0 91 chr2R 10203652 intergenic not near genes chr2R 10203698 intergenic not near genes chr2R 10203743 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-375 604 chr2R 10216192 10216220 chr2R 10216269 10216298 14 78 1.5 3.0 2.2 4.4 106 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216245 intron,intron CG12912 -,Hr46 - chr2R 10216298 intron,intron CG12912 -,Hr46 - chr2R_14_10215001 chr2R_10215001 RAL-375 605 chr2R 10220785 10220812 chr2R 10220857 10220888 8 75 1.5 4.0 2.8 2.1 103 chr2R 10220785 intron,intron CG12912 -,Hr46 - chr2R 10220836 intron,intron CG12912 -,Hr46 - chr2R 10220888 intron,intron CG12912 -,Hr46 - chr2R_8_10220001 chr2R_10220001 RAL-375 606 chr2R 10266500 10266522 chr2R 10266589 10266599 5 84 4.0 0.0 2.0 1.7 99 chr2R 10266500 intron CG12910 + chr2R 10266550 intron CG12910 + chr2R 10266599 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-375 607 chr2R 10290115 10290141 chr2R 10290196 10290222 13 80 3.0 3.0 3.0 3.2 107 chr2R 10290115 intron CAP + chr2R 10290168 intron CAP + chr2R 10290222 intron CAP + chr2R_13_10290001 chr2R_10290001 RAL-375 608 chr2R 10313310 10313352 chr2R 10313398 10313440 16 88 2.5 3.0 2.8 4.2 130 chr2R 10313310 intergenic not near genes chr2R 10313375 intergenic not near genes chr2R 10313440 intergenic Ndg + chr2R_16_10310001 chr2R_10310001 RAL-375 609 chr2R 10342170 10342197 chr2R 10342612 10342638 7 442 2.5 1.0 1.8 2.5 468 chr2R 10342170 intron CG42732 - chr2R 10342404 intron CG42732 - chr2R 10342638 intron CG42732 - chr2R_7_10340001 chr2R_10340001 RAL-375 610 chr2R 10346959 10346992 chr2R 10347046 10347080 14 87 3.0 3.5 3.2 3.3 121 chr2R 10346959 intron CG42732 - chr2R 10347020 intron CG42732 - chr2R 10347080 intron CG42732 - chr2R_14_10345001 chr2R_10345001 RAL-375 611 chr2R 10352677 10352703 chr2R 10352749 10352780 6 76 1.0 2.5 1.8 2.1 103 chr2R 10352677 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352780 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-375 612 chr2R 10363868 10363899 chr2R 10363942 10363978 11 79 0.5 3.5 2.0 3.7 110 chr2R 10363868 intron CG42732 - chr2R 10363923 intron CG42732 - chr2R 10363978 intron CG42732 - chr2R_11_10360001 chr2R_10360001 RAL-375 613 chr2R 10374781 10374812 chr2R 10374860 10374889 6 79 0.5 2.5 1.5 2.4 108 chr2R 10374781 intron CG42732 - chr2R 10374835 intron CG42732 - chr2R 10374889 intron CG42732 - chr2R_6_10370001 chr2R_10370001 RAL-375 614 chr2R 10409067 10409081 chr2R 10409143 10409157 10 76 2.0 4.5 3.2 2.4 90 chr2R 10409067 intron CG42732 - chr2R 10409112 intron CG42732 - chr2R 10409157 intron,exon CG42732 -,CG33477 - chr2R_10_10405001 chr2R_10405001 RAL-375 615 chr2R 10411805 10411837 chr2R 10411887 10411918 9 82 0.0 3.0 1.5 3.6 113 chr2R 10411805 intron CG42732 - chr2R 10411862 intron CG42732 - chr2R 10411918 intron CG42732 - chr2R_9_10410001 chr2R_10410001 RAL-375 616 chr2R 10429019 10429027 chr2R 10429095 10429104 5 75 7.0 3.5 5.2 0.8 85 chr2R 10429019 intergenic not near genes chr2R 10429062 intergenic not near genes chr2R 10429104 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-375 617 chr2R 10477163 10477187 chr2R 10477503 10477527 5 339 1.5 0.0 0.8 2.8 364 chr2R 10477163 intron whd - chr2R 10477345 intron whd - chr2R 10477527 intron whd - chr2R_5_10475001 chr2R_10475001 RAL-375 618 chr2R 10585576 10585588 chr2R 10594156 10594171 Tirant 6 8582 3.5 2.0 2.8 1.6 8595 chr2R 10585576 intron psq + chr2R 10589874 intron psq + chr2R 10594171 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-375 619 chr2R 10622353 10622380 chr2R 10637118 10637145 mdg1 5 14765 3.0 3.5 3.2 1.2 14792 chr2R 10622353 intron CG11883 + chr2R 10629749 intron CG11883 + chr2R 10637145 intron CG11883 + chr2R_5_10625001 chr2R_10625001 RAL-375 620 chr2R 10653207 10653237 chr2R 10653286 10653316 7 78 0.5 1.5 1.0 3.5 109 chr2R 10653207 intergenic not near genes chr2R 10653262 intergenic not near genes chr2R 10653316 intergenic not near genes chr2R_7_10650001 chr2R_10650001 RAL-375 621 chr2R 10757694 10757714 chr2R 10757781 10757801 4 86 0.5 2.5 1.5 1.6 107 chr2R 10757694 intron CG33144 - chr2R 10757748 intron CG33144 - chr2R 10757801 intron CG33144 - chr2R_4_10755001 chr2R_10755001 RAL-375 622 chr2R 10761555 10761585 chr2R 10761709 10761739 9 152 3.0 3.5 3.2 2.1 184 chr2R 10761555 intron,5` UTR CG33144 -,CR43605 + chr2R 10761647 intron,5` UTR CG33144 -,CR43605 + chr2R 10761739 intron CG33144 - chr2R_9_10760001 chr2R_10760001 RAL-375 623 chr2R 10771006 10771024 chr2R 10771087 10771105 7 81 2.0 3.5 2.8 1.8 99 chr2R 10771006 intron CG33144 - chr2R 10771056 intron CG33144 - chr2R 10771105 intron CG33144 - chr2R_7_10770001 chr2R_10770001 RAL-375 624 chr2R 10827333 10827356 chr2R 10827421 10827438 6 87 2.0 2.5 2.2 1.9 105 chr2R 10827333 exon CG12325 + chr2R 10827386 3` UTR CG12325 + chr2R 10827438 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_6_10825001 chr2R_10825001 RAL-375 625 chr2R 10873346 10873378 chr2R 10873433 10873465 9 87 2.0 1.0 1.5 3.6 119 chr2R 10873346 intron CG30015 - chr2R 10873406 intron CG30015 - chr2R 10873465 intron CG30015 - chr2R_9_10870001 chr2R_10870001 RAL-375 626 chr2R 10875632 10875651 chr2R 10875730 10875749 1360 8 97 2.5 1.0 1.8 2.9 117 chr2R 10875632 intergenic nclb +,CG30016 - chr2R 10875690 intergenic nclb +,CG30016 - chr2R 10875749 5` UTR nclb + chr2R_8_10875001 chr2R_10875001 RAL-375 627 chr2R 10937801 10937832 chr2R 10937938 10937970 14 138 0.0 5.5 2.8 3.7 169 chr2R 10937801 intergenic not near genes chr2R 10937886 intergenic not near genes chr2R 10937970 intergenic Spn47C - chr2R_14_10935001 chr2R_10935001 RAL-375 628 chr2R 10948028 10948062 chr2R 10955578 10955606 17.6 9 7547 1.5 4.5 3.0 2.2 7578 chr2R 10948028 intergenic not near genes chr2R 10951817 intergenic not near genes chr2R 10955606 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-375 629 chr2R 10967380 10967401 chr2R 10967558 10967579 10 178 2.0 4.0 3.0 2.5 199 chr2R 10967380 intergenic not near genes chr2R 10967480 intergenic not near genes chr2R 10967579 intergenic not near genes chr2R_10_10965001 chr2R_10965001 RAL-375 630 chr2R 11009812 11009847 chr2R 11018986 11019021 roo 5 9168 2.0 2.0 2.0 1.7 9209 chr2R 11009812 intron luna - chr2R 11014416 intron luna - chr2R 11019021 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-375 631 chr2R 11019887 11019907 chr2R 11024953 11024970 jockey 6 5066 3.5 5.5 4.5 1.1 5083 chr2R 11019887 intron luna - chr2R 11022428 intron luna - chr2R 11024970 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-375 632 chr2R 11134116 11134134 chr2R 11134353 11134371 pogo 7 237 4.5 3.5 4.0 1.4 255 chr2R 11134116 intergenic not near genes chr2R 11134244 intergenic not near genes chr2R 11134371 intergenic not near genes chr2R_7_11130001 chr2R_11130001 RAL-375 633 chr2R 11207814 11207842 chr2R 11208007 11208014 BS 11 190 6.0 2.5 4.2 2.1 200 chr2R 11207814 intron shn + chr2R 11207914 intron shn + chr2R 11208014 intron shn + chr2R_11_11205001 chr2R_11205001 RAL-375 634 chr2R 11276803 11276815 chr2R 11276971 11276983 7 167 2.5 2.5 2.5 2.0 180 chr2R 11276803 intergenic not near genes chr2R 11276893 intergenic not near genes chr2R 11276983 intergenic not near genes chr2R_7_11275001 chr2R_11275001 RAL-375 635 chr2R 11415523 11415542 chr2R 11418670 11418691 opus 6 3148 1.5 3.5 2.5 1.7 3168 chr2R 11415523 intron Drip - chr2R 11417107 intron Drip - chr2R 11418691 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-375 636 chr2R 11419868 11419893 chr2R 11419996 11420022 6 127 2.0 3.5 2.8 1.6 154 chr2R 11419868 intron Drip - chr2R 11419945 intron Drip - chr2R 11420022 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-375 637 chr2R 11472649 11472680 chr2R 11473845 11473877 pogo 11 1196 3.0 2.5 2.8 2.9 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_11_11470001 chr2R_11470001 RAL-375 638 chr2R 11494598 11494632 chr2R 11494686 11494721 8 86 2.5 7.0 4.8 1.4 123 chr2R 11494598 intron inv + chr2R 11494660 intron inv + chr2R 11494721 intron inv + chr2R_8_11490001 chr2R_11490001 RAL-375 639 chr2R 11614629 11614790 chr2R 11614717 11614875 12 88 3.0 5.5 4.2 2.3 246 chr2R 11614629 intron tou - chr2R 11614752 intron tou - chr2R 11614875 intron tou - chr2R_12_11610001 chr2R_11610001 RAL-375 640 chr2R 11631399 11631413 chr2R 11631479 11631493 6 80 0.0 1.5 0.8 3.3 94 chr2R 11631399 intron CG9005 - chr2R 11631446 intron CG9005 - chr2R 11631493 intron CG9005 - chr2R_6_11630001 chr2R_11630001 RAL-375 641 chr2R 11636419 11636437 chr2R 11636495 11636515 5 76 1.0 2.5 1.8 1.8 96 chr2R 11636419 intron CG9005 - chr2R 11636467 intron CG9005 - chr2R 11636515 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-375 642 chr2R 11665818 11665842 chr2R 11665906 11665930 5 84 0.0 3.5 1.8 1.8 112 chr2R 11665818 intron,intron Roc2 -,Tret1-1 + chr2R 11665874 intron,intron Roc2 -,Tret1-1 + chr2R 11665930 intron,intron Roc2 -,Tret1-1 + chr2R_5_11665001 chr2R_11665001 RAL-375 643 chr2R 11677871 11677897 chr2R 11677949 11677975 9 76 1.5 3.5 2.5 2.6 104 chr2R 11677871 intron,exon Roc2 -,Tret1-2 + chr2R 11677923 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_9_11675001 chr2R_11675001 RAL-375 644 chr2R 11928690 11928710 chr2R 11928768 11928787 4 78 1.0 2.0 1.5 1.6 97 chr2R 11928690 intergenic not near genes chr2R 11928738 intergenic not near genes chr2R 11928787 intergenic CR44312 - chr2R_4_11925001 chr2R_11925001 RAL-375 645 chr2R 8518779 8518798 chr2R 12066173 12066196 10 3547396 3.5 14.5 9.0 1.0 3547417 chr2R 8518779 intron mtt - chr2R 10292488 intron CAP + chr2R 12066196 intron CG8888 - chr2R_10_10290001 chr2R_10290001 RAL-375 646 chr2R 12087265 12087273 chr2R 12087347 12087354 4 80 2.0 6.5 4.2 0.8 89 chr2R 12087265 3` UTR jeb - chr2R 12087310 3` UTR jeb - chr2R 12087354 3` UTR jeb - chr2R_4_12085001 chr2R_12085001 RAL-375 647 chr2R 12093961 12093977 chr2R 12094074 12094090 6 113 4.5 2.5 3.5 1.3 129 chr2R 12093961 intron jeb - chr2R 12094026 intron jeb - chr2R 12094090 intron jeb - chr2R_6_12090001 chr2R_12090001 RAL-375 648 chr2R 12186001 12186032 chr2R 12186096 12186127 29 95 5.5 4.5 5.0 4.8 126 chr2R 12186001 intron Cyp6g1 + chr2R 12186064 intron Cyp6g1 + chr2R 12186127 intron Cyp6g1 + chr2R_29_12185001 chr2R_12185001 RAL-375 649 chr2R 12187473 12187508 chr2R 12190090 12190124 48 2619 127.5 82.5 105.0 0.5 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_48_12185001 chr2R_12185001 RAL-375 650 chr2R 12217579 12217600 chr2R 12217660 12217681 5 80 2.5 4.5 3.5 1.1 102 chr2R 12217579 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217681 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-375 651 chr2R 12363382 12363416 chr2R 12363814 12363848 19 431 2.5 3.5 3.0 4.8 466 chr2R 12363382 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_19_12360001 chr2R_12360001 RAL-375 652 chr2R 12377496 12377526 chr2R 12377617 12377648 10 121 6.5 3.0 4.8 1.7 152 chr2R 12377496 intergenic Cpr49Aa + chr2R 12377572 intergenic Cpr49Aa + chr2R 12377648 intergenic Cpr49Aa + chr2R_10_12375001 chr2R_12375001 RAL-375 653 chr2R 12501689 12501724 chr2R 12503850 12503878 Rt1c 10 2159 3.5 1.0 2.2 3.1 2189 chr2R 12501689 intron fdl - chr2R 12502784 intron fdl - chr2R 12503878 intron fdl - chr2R_10_12500001 chr2R_12500001 RAL-375 654 chr2R 12504145 12504179 chr2R 12504222 12504256 14 75 5.5 3.0 4.2 2.7 111 chr2R 12504145 intron fdl - chr2R 12504200 intron fdl - chr2R 12504256 intron fdl - chr2R_14_12500001 chr2R_12500001 RAL-375 655 chr2R 12527271 12527294 chr2R 12527480 12527503 6 209 1.5 3.0 2.2 1.9 232 chr2R 12527271 intergenic not near genes chr2R 12527387 intergenic not near genes chr2R 12527503 intergenic not near genes chr2R_6_12525001 chr2R_12525001 RAL-375 656 chr2R 12540479 12540497 chr2R 12540561 12540575 10 82 3.5 3.5 3.5 2.2 96 chr2R 12540479 intron fra + chr2R 12540527 intron fra + chr2R 12540575 intron fra + chr2R_10_12540001 chr2R_12540001 RAL-375 657 chr2R 12548543 12548554 chr2R 12548620 12548631 6 77 0.0 10.5 5.2 1.0 88 chr2R 12548543 intron fra + chr2R 12548587 intron fra + chr2R 12548631 intron fra + chr2R_6_12545001 chr2R_12545001 RAL-375 658 chr2R 12707529 12707548 chr2R 12715895 12715914 roo 8 8366 3.0 3.5 3.2 1.9 8385 chr2R 12707529 intron CG42663 + chr2R 12711722 intron CG42663 + chr2R 12715914 intron CG42663 + chr2R_8_12710001 chr2R_12710001 RAL-375 659 chr2R 12771321 12771355 chr2R 12771430 12771464 9 109 5.0 2.0 3.5 2.0 143 chr2R 12771321 intergenic not near genes chr2R 12771392 intergenic not near genes chr2R 12771464 intergenic not near genes chr2R_9_12770001 chr2R_12770001 RAL-375 660 chr2R 12789293 12789322 chr2R 12797656 12797662 roo 5 8357 2.5 2.0 2.2 1.6 8369 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793478 intron,intron sca +,CR45137 - chr2R 12797662 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-375 661 chr2R 12819455 12819463 chr2R 12824523 12824532 jockey 4 5069 4.0 4.0 4.0 0.8 5077 chr2R 12819455 intergenic not near genes chr2R 12821994 intergenic not near genes chr2R 12824532 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-375 662 chr2R 13121152 13121184 chr2R 13121238 13121267 9 85 5.5 0.5 3.0 2.2 115 chr2R 13121152 intron CG13325 + chr2R 13121210 intron CG13325 + chr2R 13121267 intron CG13325 + chr2R_9_13120001 chr2R_13120001 RAL-375 663 chr2R 13136839 13136864 chr2R 13141637 13141654 Doc 7 4796 4.5 2.0 3.2 1.7 4815 chr2R 13136839 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-375 664 chr2R 13302584 13302601 chr2R 13302662 13302679 6 78 2.0 2.0 2.0 2.0 95 chr2R 13302584 intergenic not near genes chr2R 13302632 intergenic not near genes chr2R 13302679 intergenic not near genes chr2R_6_13300001 chr2R_13300001 RAL-375 665 chr2R 13431840 13431861 chr2R 13431946 13431968 10 106 6.0 2.5 4.2 1.9 128 chr2R 13431840 intron CG42321 - chr2R 13431904 intron CG42321 - chr2R 13431968 intron CG42321 - chr2R_10_13430001 chr2R_13430001 RAL-375 666 chr2R 13439122 13439140 chr2R 13439230 13439277 4 130 2.5 0.0 1.2 1.8 155 chr2R 13439122 intergenic CG42321 -,cnn - chr2R 13439200 intergenic cnn -,CG42321 - chr2R 13439277 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-375 667 chr2R 13446692 13446710 chr2R 13446773 13446791 6 81 6.0 0.0 3.0 1.5 99 chr2R 13446692 intron cnn - chr2R 13446742 intron cnn - chr2R 13446791 intron cnn - chr2R_6_13445001 chr2R_13445001 RAL-375 668 chr2R 13566260 13566290 chr2R 13566340 13566370 9 80 2.5 0.0 1.2 4.1 110 chr2R 13566260 intergenic not near genes chr2R 13566315 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-375 669 chr2R 13580503 13580534 chr2R 13580851 13580884 jockey 12 349 0.0 5.0 2.5 3.4 381 chr2R 13580503 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580884 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_12_13580001 chr2R_13580001 RAL-375 670 chr2R 13709846 13709851 chr2R 13709939 13709944 5 93 2.5 3.0 2.8 1.3 98 chr2R 13709846 intron fas + chr2R 13709895 intron fas + chr2R 13709944 intron fas + chr2R_5_13705001 chr2R_13705001 RAL-375 671 chr2R 13728143 13728165 chr2R 13735800 13735822 opus 8 7657 1.5 4.5 3.0 2.0 7679 chr2R 13728143 intron fas + chr2R 13731982 intron fas + chr2R 13735822 intron fas + chr2R_8_13730001 chr2R_13730001 RAL-375 672 chr2R 13768995 13769009 chr2R 13769085 13769105 6 95 3.0 6.0 4.5 1.1 110 chr2R 13768995 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-375 673 chr2R 13854957 13854976 chr2R 13855234 13855261 9 284 4.0 6.5 5.2 1.5 304 chr2R 13854957 intron,intron CG6553 -,CR44367 + chr2R 13855109 exon,5` UTR CG6553 -,CR44367 + chr2R 13855261 exon,5` UTR CG6553 -,CR44367 + chr2R_9_13855001 chr2R_13855001 RAL-375 674 chr2R 13925852 13925872 chr2R 13926028 13926048 8 176 3.0 5.0 4.0 1.6 196 chr2R 13925852 intron shot - chr2R 13925950 intron shot - chr2R 13926048 intron shot - chr2R_8_13925001 chr2R_13925001 RAL-375 675 chr2R 14235475 14235490 chr2R 14235555 14235570 8 80 3.0 1.5 2.2 2.5 95 chr2R 14235475 intergenic Opa1 -,CG8485 - chr2R 14235522 intergenic Opa1 -,CG8485 - chr2R 14235570 intergenic Opa1 -,CG8485 - chr2R_8_14235001 chr2R_14235001 RAL-375 676 chr2R 14277578 14277611 chr2R 14277660 14277693 15 81 3.0 2.5 2.8 3.9 115 chr2R 14277578 5` UTR Ih + chr2R 14277636 5` UTR Ih + chr2R 14277693 5` UTR Ih + chr2R_15_14275001 chr2R_14275001 RAL-375 677 chr2R 14285044 14285051 chr2R 14285139 14285148 4 96 1.0 2.0 1.5 1.6 104 chr2R 14285044 intron Ih + chr2R 14285096 intron Ih + chr2R 14285148 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-375 678 chr2R 14393872 14393896 chr2R 14393956 14393980 9 82 2.0 3.5 2.8 2.4 108 chr2R 14393872 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-375 679 chr2R 14394228 14394247 chr2R 14399017 14399036 Doc 7 4789 4.5 4.0 4.2 1.3 4808 chr2R 14394228 intergenic not near genes chr2R 14396632 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_7_14395001 chr2R_14395001 RAL-375 680 chr2R 14467306 14467325 chr2R 14476464 14476481 roo 9 9157 1.5 5.0 3.2 2.1 9175 chr2R 14467306 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476481 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-375 681 chr2R 14525416 14525420 chr2R 14525669 14525673 4 253 0.5 1.5 1.0 2.0 257 chr2R 14525416 intergenic not near genes chr2R 14525544 intergenic not near genes chr2R 14525673 intergenic not near genes chr2R_4_14525001 chr2R_14525001 RAL-375 682 chr2R 14550528 14550557 chr2R 14550606 14550636 6 79 0.0 3.0 1.5 2.4 108 chr2R 14550528 intron ttv + chr2R 14550582 intron ttv + chr2R 14550636 intron ttv + chr2R_6_14550001 chr2R_14550001 RAL-375 683 chr2R 14634282 14634314 chr2R 14634370 14634402 12 88 5.0 2.5 3.8 2.5 120 chr2R 14634282 intergenic not near genes chr2R 14634342 intergenic not near genes chr2R 14634402 intergenic not near genes chr2R_12_14630001 chr2R_14630001 RAL-375 684 chr2R 14707135 14707154 chr2R 14707778 14707797 6 643 2.0 1.5 1.8 2.1 662 chr2R 14707135 intron mspo - chr2R 14707466 intron mspo - chr2R 14707797 intron mspo - chr2R_6_14705001 chr2R_14705001 RAL-375 685 chr2R 14790622 14790655 chr2R 14790775 14790793 6 150 3.0 3.0 3.0 1.5 171 chr2R 14790622 intron kn - chr2R 14790708 intron kn - chr2R 14790793 intron kn - chr2R_6_14790001 chr2R_14790001 RAL-375 686 chr2R 14796346 14796359 chr2R 14796437 14796456 5 96 0.5 1.5 1.0 2.5 110 chr2R 14796346 intron kn - chr2R 14796401 intron kn - chr2R 14796456 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-375 687 chr2R 14835354 14835383 chr2R 14835433 14835463 5 80 4.0 3.5 3.8 1.0 109 chr2R 14835354 intergenic not near genes chr2R 14835408 intergenic not near genes chr2R 14835463 intergenic not near genes chr2R_5_14835001 chr2R_14835001 RAL-375 688 chr2R 14889208 14889233 chr2R 14897816 14897841 Max-element 9 8608 2.5 0.0 1.2 4.1 8633 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897841 intergenic not near genes chr2R_9_14890001 chr2R_14890001 RAL-375 689 chr2R 14911701 14911728 chr2R 14911824 14911851 8 123 4.0 1.5 2.8 2.1 150 chr2R 14911701 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-375 690 chr2R 14917855 14917883 chr2R 14917935 14917966 10 84 1.0 5.5 3.2 2.4 111 chr2R 14917855 intron CG10249 - chr2R 14917910 intron CG10249 - chr2R 14917966 intron CG10249 - chr2R_10_14915001 chr2R_14915001 RAL-375 691 chr2R 14922142 14922170 chr2R 14922217 14922246 11 75 3.0 3.0 3.0 2.8 104 chr2R 14922142 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_11_14920001 chr2R_14920001 RAL-375 692 chr2R 14934458 14934468 chr2R 14934546 14934556 4 88 1.5 0.0 0.8 2.2 98 chr2R 14934458 intron CG10253 - chr2R 14934507 intron CG10253 - chr2R 14934556 intron CG10253 - chr2R_4_14930001 chr2R_14930001 RAL-375 693 chr2R 14954746 14954780 chr2R 14954822 14954855 7 76 0.5 1.5 1.0 3.5 109 chr2R 14954746 intron aPKC - chr2R 14954800 intron aPKC - chr2R 14954855 intron aPKC - chr2R_7_14950001 chr2R_14950001 RAL-375 694 chr2R 14968065 14968087 chr2R 14968144 14968166 8 79 5.0 3.5 4.2 1.5 101 chr2R 14968065 intron ckn + chr2R 14968116 intron ckn + chr2R 14968166 intron ckn + chr2R_8_14965001 chr2R_14965001 RAL-375 695 chr2R 15004727 15004757 chr2R 15005056 15005086 jockey 6 329 3.0 4.5 3.8 1.2 359 chr2R 15004727 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005086 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-375 696 chr2R 15015461 15015483 chr2R 15022885 15022907 mdg1 14 7423 4.0 4.0 4.0 2.8 7446 chr2R 15015461 intron hbs + chr2R 15019184 intron hbs + chr2R 15022907 intron hbs + chr2R_14_15015001 chr2R_15015001 RAL-375 697 chr2R 15033486 15033512 chr2R 15033555 15033589 11 72 4.0 4.0 4.0 2.2 103 chr2R 15033486 intron hbs + chr2R 15033538 intron hbs + chr2R 15033589 intron hbs + chr2R_11_15030001 chr2R_15030001 RAL-375 698 chr2R 15065617 15065646 chr2R 15065693 15065707 10 73 0.0 3.0 1.5 4.0 90 chr2R 15065617 intergenic not near genes chr2R 15065662 intergenic not near genes chr2R 15065707 intergenic not near genes chr2R_10_15065001 chr2R_15065001 RAL-375 699 chr2R 15074801 15074829 chr2R 15075062 15075090 7 258 2.0 3.5 2.8 1.8 289 chr2R 15074801 intergenic not near genes chr2R 15074946 intergenic not near genes chr2R 15075090 intergenic not near genes chr2R_7_15070001 chr2R_15070001 RAL-375 700 chr2R 15084980 15085005 chr2R 15092028 15092054 297 5 7049 6.5 2.5 4.5 0.9 7074 chr2R 15084980 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092054 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-375 701 chr2R 15092412 15092438 chr2R 15092502 15092528 14 90 2.0 2.0 2.0 4.7 116 chr2R 15092412 5` UTR CR44457 + chr2R 15092470 intergenic CR44457 + chr2R 15092528 intergenic CR44457 + chr2R_14_15090001 chr2R_15090001 RAL-375 702 chr2R 15119324 15119350 chr2R 15127805 15127827 Tirant 11 8479 3.5 4.5 4.0 2.2 8503 chr2R 15119324 intron chn + chr2R 15123576 intron chn + chr2R 15127827 intron chn + chr2R_11_15120001 chr2R_15120001 RAL-375 703 chr2R 15296160 15296172 chr2R 15296243 15296254 5 82 2.0 3.0 2.5 1.4 94 chr2R 15296160 intron Trpm - chr2R 15296207 intron Trpm - chr2R 15296254 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-375 704 chr2R 15501963 15501994 chr2R 15502081 15502110 10 118 3.5 0.5 2.0 3.3 147 chr2R 15501963 exon Ir52b + chr2R 15502036 exon Ir52b + chr2R 15502110 exon Ir52b + chr2R_10_15500001 chr2R_15500001 RAL-375 705 chr2R 15655982 15656012 chr2R 15656062 15656092 9 80 2.0 3.5 2.8 2.4 110 chr2R 15655982 intron CG42524 + chr2R 15656037 intron CG42524 + chr2R 15656092 intron CG42524 + chr2R_9_15655001 chr2R_15655001 RAL-375 706 chr2R 15697895 15697919 chr2R 15697975 15697999 9 81 5.0 0.0 2.5 2.6 104 chr2R 15697895 exon CG33462 + chr2R 15697947 3` UTR CG33462 + chr2R 15697999 3` UTR CG33462 + chr2R_9_15695001 chr2R_15695001 RAL-375 707 chr2R 15771226 15771253 chr2R 15771365 15771392 10 138 4.0 2.5 3.2 2.4 166 chr2R 15771226 intron Zasp52 - chr2R 15771309 intron Zasp52 - chr2R 15771392 intron Zasp52 - chr2R_10_15770001 chr2R_15770001 RAL-375 708 chr2R 15783605 15783841 chr2R 15783741 15783971 6 134 13.5 3.5 8.5 0.6 366 chr2R 15783605 intron Zasp52 - chr2R 15783788 intron Zasp52 - chr2R 15783971 intron Zasp52 - chr2R_6_15780001 chr2R_15780001 RAL-375 709 chr2R 15833537 15833559 chr2R 15833604 15833646 7 81 3.0 4.5 3.8 1.5 109 chr2R 15833537 intron,intron tun +,Poxn - chr2R 15833592 intron,intron tun +,Poxn - chr2R 15833646 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-375 710 chr2R 15885860 15885895 chr2R 15885937 15885972 9 77 26.5 23.5 25.0 0.3 112 chr2R 15885860 intron sli - chr2R 15885916 intron sli - chr2R 15885972 intron sli - chr2R_9_15885001 chr2R_15885001 RAL-375 711 chr2R 16040771 16040803 chr2R 16040858 16040890 5 87 2.0 5.0 3.5 1.1 119 chr2R 16040771 intron SP2353 + chr2R 16040830 intron SP2353 + chr2R 16040890 intron SP2353 + chr2R_5_16040001 chr2R_16040001 RAL-375 712 chr2R 16245423 16245430 chr2R 16245515 16245524 6 94 0.0 2.0 1.0 3.0 101 chr2R 16245423 intron CngA - chr2R 16245474 intron CngA - chr2R 16245524 intron CngA - chr2R_6_16245001 chr2R_16245001 RAL-375 713 chr2R 16460252 16460279 chr2R 16460454 16460481 9 202 1.5 4.5 3.0 2.2 229 chr2R 16460252 intergenic not near genes chr2R 16460366 intergenic not near genes chr2R 16460481 intergenic not near genes chr2R_9_16460001 chr2R_16460001 RAL-375 714 chr2R 16539644 16539665 chr2R 16544853 16544874 copia 5 5209 2.0 1.5 1.8 1.8 5230 chr2R 16539644 intergenic not near genes chr2R 16542259 intergenic not near genes chr2R 16544874 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-375 715 chr2R 16547026 16547031 chr2R 16547105 16547111 4 79 0.0 0.5 0.2 3.3 85 chr2R 16547026 intergenic not near genes chr2R 16547068 intergenic not near genes chr2R 16547111 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-375 716 chr2R 16571874 16571902 chr2R 16571968 16571997 18 95 3.0 1.5 2.2 5.6 123 chr2R 16571874 intergenic CG4927 + chr2R 16571936 intergenic CG4927 + chr2R 16571997 intergenic CG4927 + chr2R_18_16570001 chr2R_16570001 RAL-375 717 chr2R 16601520 16601533 chr2R 16601631 16601644 5 111 4.5 4.5 4.5 0.9 124 chr2R 16601520 intron CG8303 - chr2R 16601582 intron CG8303 - chr2R 16601644 intron CG8303 - chr2R_5_16600001 chr2R_16600001 RAL-375 718 chr2R 16601535 16601545 chr2R 16601630 16601656 5 108 3.0 4.5 3.8 1.0 121 chr2R 16601535 intron CG8303 - chr2R 16601596 intron CG8303 - chr2R 16601656 intron CG8303 - chr2R_5_16600001 chr2R_16600001 RAL-375 719 chr2R 16617064 16617090 chr2R 16617143 16617169 6 79 1.0 4.0 2.5 1.7 105 chr2R 16617064 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-375 720 chr2R 16708938 16708947 chr2R 16709015 16709024 4 77 0.0 6.0 3.0 1.0 86 chr2R 16708938 intron CG30463 - chr2R 16708981 intron CG30463 - chr2R 16709024 intron CG30463 - chr2R_4_16705001 chr2R_16705001 RAL-375 721 chr2R 16732620 16732654 chr2R 16732707 16732741 10 86 2.5 5.5 4.0 2.0 121 chr2R 16732620 5` UTR CG30463 - chr2R 16732680 5` UTR CG30463 - chr2R 16732741 5` UTR CG30463 - chr2R_10_16730001 chr2R_16730001 RAL-375 722 chr2R 16737136 16737166 chr2R 16737235 16737266 9 97 2.5 4.5 3.5 2.0 130 chr2R 16737136 3` UTR CG43104 - chr2R 16737201 3` UTR CG43104 - chr2R 16737266 exon CG43104 - chr2R_9_16735001 chr2R_16735001 RAL-375 723 chr2R 16787483 16787494 chr2R 16787565 16787576 4 82 2.0 0.0 1.0 2.0 93 chr2R 16787483 intron CG5522 + chr2R 16787530 intron CG5522 + chr2R 16787576 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-375 724 chr2R 16893778 16893801 chr2R 16893861 16893883 5 82 2.0 2.0 2.0 1.7 105 chr2R 16893778 intron CG8910 - chr2R 16893830 intron CG8910 - chr2R 16893883 intron CG8910 - chr2R_5_16890001 chr2R_16890001 RAL-375 725 chr2R 16972267 16972295 chr2R 16972432 16972460 15 164 0.5 1.5 1.0 7.5 193 chr2R 16972267 intergenic not near genes chr2R 16972364 intergenic not near genes chr2R 16972460 intergenic not near genes chr2R_15_16970001 chr2R_16970001 RAL-375 726 chr2R 16975206 16975222 chr2R 16975283 16975299 4 76 2.5 1.0 1.8 1.4 93 chr2R 16975206 intron Cbp53E + chr2R 16975252 intron Cbp53E + chr2R 16975299 intron Cbp53E + chr2R_4_16975001 chr2R_16975001 RAL-375 727 chr2R 17074902 17074922 chr2R 17074997 17075017 7 95 4.5 1.0 2.8 1.8 115 chr2R 17074902 intron CG30460 - chr2R 17074960 intron CG30460 - chr2R 17075017 intron CG30460 - chr2R_7_17070001 chr2R_17070001 RAL-375 728 chr2R 17132855 17132869 chr2R 17132955 17132969 4 100 3.0 4.5 3.8 0.8 114 chr2R 17132855 intergenic not near genes chr2R 17132912 intergenic not near genes chr2R 17132969 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 RAL-375 729 chr2R 17147239 17147271 chr2R 17152270 17152302 jockey 12 5031 3.5 3.0 3.2 2.9 5063 chr2R 17147239 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152302 intergenic not near genes chr2R_12_17145001 chr2R_17145001 RAL-375 730 chr2R 17202337 17202366 chr2R 17202417 17202448 10 81 3.5 2.0 2.8 2.6 111 chr2R 17202337 intergenic not near genes chr2R 17202392 intergenic not near genes chr2R 17202448 intergenic not near genes chr2R_10_17200001 chr2R_17200001 RAL-375 731 chr2R 17227085 17227119 chr2R 17227165 17227194 7 79 1.5 2.5 2.0 2.3 109 chr2R 17227085 intron mbl + chr2R 17227140 intron mbl + chr2R 17227194 intron mbl + chr2R_7_17225001 chr2R_17225001 RAL-375 732 chr2R 17236507 17236538 chr2R 17241711 17241742 copia 8 5204 2.5 2.0 2.2 2.5 5235 chr2R 17236507 intron mbl + chr2R 17239124 intron mbl + chr2R 17241742 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-375 733 chr2R 17263320 17263327 chr2R 17263395 17263407 7 79 0.0 5.0 2.5 2.0 87 chr2R 17263320 intron mbl + chr2R 17263364 intron mbl + chr2R 17263407 intron mbl + chr2R_7_17260001 chr2R_17260001 RAL-375 734 chr2R 17459008 17459012 chr2R 17459092 17459097 7 85 11.5 4.5 8.0 0.8 89 chr2R 17459008 intron CG14478 + chr2R 17459052 intron CG14478 + chr2R 17459097 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-375 735 chr2R 17459020 17459039 chr2R 17459091 17459124 7 83 5.0 4.5 4.8 1.2 104 chr2R 17459020 intron CG14478 + chr2R 17459072 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-375 736 chr2R 17461290 17461316 chr2R 17461448 17461474 8 157 2.0 2.5 2.2 2.5 184 chr2R 17461290 intron CG14478 + chr2R 17461382 intron CG14478 + chr2R 17461474 intron CG14478 + chr2R_8_17460001 chr2R_17460001 RAL-375 737 chr2R 17485922 17485932 chr2R 17490692 17490702 F-element 9 4770 3.5 2.5 3.0 2.2 4780 chr2R 17485922 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490702 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-375 738 chr2R 17500679 17500692 chr2R 17500755 17500768 5 76 0.0 5.0 2.5 1.4 89 chr2R 17500679 intergenic not near genes chr2R 17500724 intergenic not near genes chr2R 17500768 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-375 739 chr2R 17627755 17627769 chr2R 17628082 17628096 6 326 5.5 3.5 4.5 1.1 341 chr2R 17627755 intron CG10936 - chr2R 17627926 intron CG10936 - chr2R 17628096 intron CG10936 - chr2R_6_17625001 chr2R_17625001 RAL-375 740 chr2R 17655207 17655220 chr2R 17655276 17655296 4 74 4.5 2.0 3.2 1.0 89 chr2R 17655207 intron CCHa1-R - chr2R 17655252 intron CCHa1-R - chr2R 17655296 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-375 741 chr2R 17784026 17784055 chr2R 17784265 17784291 pogo 8 236 0.0 4.5 2.2 2.5 265 chr2R 17784026 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784291 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-375 742 chr2R 17807936 17807968 chr2R 17808021 17808066 7 96 0.5 0.0 0.2 5.8 130 chr2R 17807936 intron grh + chr2R 17808001 intron grh + chr2R 17808066 intron grh + chr2R_7_17805001 chr2R_17805001 RAL-375 743 chr2R 17918160 17918196 chr2R 17918237 17918270 9 74 2.5 2.0 2.2 2.8 110 chr2R 17918160 intron Elk + chr2R 17918215 intron Elk + chr2R 17918270 intron Elk + chr2R_9_17915001 chr2R_17915001 RAL-375 744 chr2R 18023161 18023194 chr2R 18023247 18023280 13 84 2.5 3.5 3.0 3.2 119 chr2R 18023161 intergenic not near genes chr2R 18023220 intergenic not near genes chr2R 18023280 intergenic not near genes chr2R_13_18020001 chr2R_18020001 RAL-375 745 chr2R 18045675 18045688 chr2R 18046027 18046040 jockey 4 352 2.0 4.0 3.0 1.0 365 chr2R 18045675 intergenic not near genes chr2R 18045858 intergenic not near genes chr2R 18046040 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 RAL-375 746 chr2R 18107411 18107427 chr2R 18107566 18107580 6 154 3.5 4.0 3.8 1.2 169 chr2R 18107411 intron CG5756 - chr2R 18107496 intron CG5756 - chr2R 18107580 intron CG5756 - chr2R_6_18105001 chr2R_18105001 RAL-375 747 chr2R 18107428 18107437 chr2R 18107563 18107591 7 149 2.5 3.0 2.8 1.8 163 chr2R 18107428 intron CG5756 - chr2R 18107510 intron CG5756 - chr2R 18107591 intron CG5756 - chr2R_7_18105001 chr2R_18105001 RAL-375 748 chr2R 18111687 18111705 chr2R 18115555 18115573 F-element 6 3868 0.0 3.5 1.8 2.1 3886 chr2R 18111687 intergenic not near genes chr2R 18113630 intergenic not near genes chr2R 18115573 intergenic not near genes chr2R_6_18110001 chr2R_18110001 RAL-375 749 chr2R 18187665 18187679 chr2R 18187879 18187891 4 210 4.5 4.5 4.5 0.7 226 chr2R 18187665 intron CG33958 - chr2R 18187778 intron,exon CG33958 -,CG14499 + chr2R 18187891 intron,exon CG33958 -,CG14499 + chr2R_4_18185001 chr2R_18185001 RAL-375 750 chr2R 18221245 18221265 chr2R 18221372 18221390 4 126 0.5 2.0 1.2 1.8 145 chr2R 18221245 intergenic not near genes chr2R 18221318 intergenic not near genes chr2R 18221390 intergenic not near genes chr2R_4_18220001 chr2R_18220001 RAL-375 751 chr2R 18224599 18224618 chr2R 18224678 18224697 5 78 3.0 3.0 3.0 1.2 98 chr2R 18224599 intergenic not near genes chr2R 18224648 intergenic not near genes chr2R 18224697 intergenic not near genes chr2R_5_18220001 chr2R_18220001 RAL-375 752 chr2R 18358391 18358420 chr2R 18372603 18372632 roo 16 14212 3.0 5.0 4.0 3.2 14241 chr2R 18358391 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_16_18365001 chr2R_18365001 RAL-375 753 chr2R 18398178 18398192 chr2R 18398272 18398280 5 93 1.5 4.0 2.8 1.3 102 chr2R 18398178 intron GstE10 - chr2R 18398229 intron GstE10 - chr2R 18398280 intron GstE10 - chr2R_5_18395001 chr2R_18395001 RAL-375 754 chr2R 18402502 18402535 chr2R 18402590 18402617 13 87 3.5 9.0 6.2 1.8 115 chr2R 18402502 intergenic not near genes chr2R 18402560 intergenic not near genes chr2R 18402617 intergenic not near genes chr2R_13_18400001 chr2R_18400001 RAL-375 755 chr2R 18528194 18528207 chr2R 18528279 18528292 8 84 5.0 2.5 3.8 1.7 98 chr2R 18528194 intron CG10924 + chr2R 18528243 intron CG10924 + chr2R 18528292 intron CG10924 + chr2R_8_18525001 chr2R_18525001 RAL-375 756 chr2R 18528208 18528222 chr2R 18528278 18528307 7 77 2.0 2.5 2.2 2.2 99 chr2R 18528208 intron CG10924 + chr2R 18528258 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-375 757 chr2R 18575816 18575831 chr2R 18581986 18582018 3S18 5 6184 1.5 8.0 4.8 0.9 6202 chr2R 18575816 intron GEFmeso - chr2R 18578917 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-375 758 chr2R 18590866 18590898 chr2R 18600018 18600035 roo 13 9150 0.5 2.5 1.5 5.2 9169 chr2R 18590866 intron GEFmeso - chr2R 18595450 intron GEFmeso - chr2R 18600035 intron GEFmeso - chr2R_13_18595001 chr2R_18595001 RAL-375 759 chr2R 18720004 18720029 chr2R 18720155 18720180 7 150 4.0 4.0 4.0 1.4 176 chr2R 18720004 intron Hs3st-A + chr2R 18720092 intron Hs3st-A + chr2R 18720180 intron,5` UTR Hs3st-A +,mir-4982 + chr2R_7_18720001 chr2R_18720001 RAL-375 760 chr2R 18847615 18847641 chr2R 18847696 18847721 7 81 4.0 5.5 4.8 1.2 106 chr2R 18847615 exon CG15100 - chr2R 18847668 exon CG15100 - chr2R 18847721 exon CG15100 - chr2R_7_18845001 chr2R_18845001 RAL-375 761 chr2R 18862307 18862322 chr2R 18862394 18862409 5 87 1.0 0.0 0.5 3.3 102 chr2R 18862307 intergenic Jheh3 - chr2R 18862358 intergenic Jheh3 - chr2R 18862409 intergenic Jheh3 -,CG43069 + chr2R_5_18860001 chr2R_18860001 RAL-375 762 chr2R 18892351 18892372 chr2R 18892545 18892566 5 194 3.0 0.5 1.8 1.8 215 chr2R 18892351 intron sano + chr2R 18892458 intron sano + chr2R 18892566 intron sano + chr2R_5_18890001 chr2R_18890001 RAL-375 763 chr2R 18926521 18926526 chr2R 18926607 18926613 4 87 3.5 5.5 4.5 0.7 92 chr2R 18926521 intron sano + chr2R 18926567 intron sano + chr2R 18926613 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-375 764 chr2R 18930451 18930484 chr2R 18930544 18930577 9 93 1.0 4.0 2.5 2.6 126 chr2R 18930451 intron sano + chr2R 18930514 intron sano + chr2R 18930577 intron sano + chr2R_9_18930001 chr2R_18930001 RAL-375 765 chr2R 18953162 18953192 chr2R 18953249 18953279 10 87 2.5 2.0 2.2 3.1 117 chr2R 18953162 intron sano + chr2R 18953220 intron sano + chr2R 18953279 intron sano + chr2R_10_18950001 chr2R_18950001 RAL-375 766 chr2R 18983875 18983904 chr2R 18984607 18984636 11 732 0.5 3.5 2.0 3.7 761 chr2R 18983875 intergenic not near genes chr2R 18984256 intergenic not near genes chr2R 18984636 intergenic not near genes chr2R_11_18980001 chr2R_18980001 RAL-375 767 chr2R 19012936 19012968 chr2R 19013030 19013059 8 89 2.0 3.0 2.5 2.3 123 chr2R 19012936 intergenic not near genes chr2R 19012998 intergenic not near genes chr2R 19013059 intergenic not near genes chr2R_8_19010001 chr2R_19010001 RAL-375 768 chr2R 19072108 19072134 chr2R 19072184 19072186 7 71 4.5 2.5 3.5 1.6 78 chr2R 19072108 intron 5-HT1A + chr2R 19072147 intron 5-HT1A + chr2R 19072186 intron 5-HT1A + chr2R_7_19070001 chr2R_19070001 RAL-375 769 chr2R 19171370 19171388 chr2R 19171573 19171591 10 202 3.0 4.0 3.5 2.2 221 chr2R 19171370 exon CG10737 + chr2R 19171480 intron CG10737 + chr2R 19171591 intron CG10737 + chr2R_10_19170001 chr2R_19170001 RAL-375 770 chr2R 19522644 19522670 chr2R 19522723 19522744 7 78 0.5 1.0 0.8 3.9 100 chr2R 19522644 3` UTR sm - chr2R 19522694 3` UTR sm - chr2R 19522744 3` UTR sm - chr2R_7_19520001 chr2R_19520001 RAL-375 771 chr2R 19536465 19536499 chr2R 19536547 19536581 8 82 4.0 1.5 2.8 2.1 116 chr2R 19536465 intron sm - chr2R 19536523 intron sm - chr2R 19536581 intron sm - chr2R_8_19535001 chr2R_19535001 RAL-375 772 chr2R 19540140 19540167 chr2R 19540216 19540243 10 76 4.0 3.0 3.5 2.2 103 chr2R 19540140 intron sm - chr2R 19540192 intron sm - chr2R 19540243 intron sm - chr2R_10_19540001 chr2R_19540001 RAL-375 773 chr2R 19545384 19545410 chr2R 19545474 19545500 8 90 1.0 3.0 2.0 2.7 116 chr2R 19545384 intron sm - chr2R 19545442 intron sm - chr2R 19545500 intron sm - chr2R_8_19545001 chr2R_19545001 RAL-375 774 chr2R 19558682 19558713 chr2R 19558779 19558811 10 96 6.5 2.5 4.5 1.8 129 chr2R 19558682 intron sm - chr2R 19558746 intron sm - chr2R 19558811 intron sm - chr2R_10_19555001 chr2R_19555001 RAL-375 775 chr2R 19579699 19579721 chr2R 19579822 19579841 5 119 3.0 2.5 2.8 1.3 142 chr2R 19579699 intron sm - chr2R 19579770 intron sm - chr2R 19579841 intron sm - chr2R_5_19575001 chr2R_19575001 RAL-375 776 chr2R 19579722 19579731 chr2R 19579821 19579855 5 119 2.0 2.5 2.2 1.6 133 chr2R 19579722 intron sm - chr2R 19579788 intron sm - chr2R 19579855 intron sm - chr2R_5_19575001 chr2R_19575001 RAL-375 777 chr2R 19776595 19776630 chr2R 19779916 19779938 jockey 9 3318 1.5 4.5 3.0 2.2 3343 chr2R 19776595 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779938 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-375 778 chr2R 19957434 19957462 chr2R 19962636 19962664 copia 6 5197 3.0 5.5 4.2 1.2 5230 chr2R 19957434 intergenic CG44623 + chr2R 19960049 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-375 779 chr2R 19997025 19997054 chr2R 19997101 19997130 8 76 2.5 2.0 2.2 2.5 105 chr2R 19997025 intergenic not near genes chr2R 19997078 intergenic not near genes chr2R 19997130 intergenic not near genes chr2R_8_19995001 chr2R_19995001 RAL-375 780 chr2R 20150748 20150776 chr2R 20151791 20151820 13 1043 3.5 3.0 3.2 3.1 1072 chr2R 20150748 5` UTR CR45229 + chr2R 20151284 intergenic CR45229 + chr2R 20151820 intergenic not near genes chr2R_13_20150001 chr2R_20150001 RAL-375 781 chr2R 20176505 20176509 chr2R 20176589 20176593 6 84 0.5 3.0 1.8 2.1 88 chr2R 20176505 intergenic not near genes chr2R 20176549 intergenic not near genes chr2R 20176593 intergenic not near genes chr2R_6_20175001 chr2R_20175001 RAL-375 782 chr2R 20203830 20203860 chr2R 20204010 20204040 11 180 1.0 6.0 3.5 2.4 210 chr2R 20203830 intergenic not near genes chr2R 20203935 intergenic not near genes chr2R 20204040 intergenic not near genes chr2R_11_20200001 chr2R_20200001 RAL-375 783 chr2R 20326768 20326793 chr2R 20326844 20326866 10 75 3.5 2.5 3.0 2.5 98 chr2R 20326768 5` UTR MED8 - chr2R 20326817 intergenic MED8 -,CG8929 + chr2R 20326866 intergenic MED8 -,CG8929 + chr2R_10_20325001 chr2R_20325001 RAL-375 784 chr2R 20361426 20361441 chr2R 20361545 20361559 6 119 0.0 5.5 2.8 1.6 133 chr2R 20361426 intergenic not near genes chr2R 20361492 intergenic not near genes chr2R 20361559 intergenic not near genes chr2R_6_20360001 chr2R_20360001 RAL-375 785 chr2R 20395172 20395191 chr2R 20395250 20395269 4 78 2.5 1.0 1.8 1.4 97 chr2R 20395172 intergenic not near genes chr2R 20395220 intergenic not near genes chr2R 20395269 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-375 786 chr2R 20523041 20523066 chr2R 20523152 20523177 9 110 5.5 2.5 4.0 1.8 136 chr2R 20523041 intergenic not near genes chr2R 20523109 intergenic not near genes chr2R 20523177 intergenic not near genes chr2R_9_20520001 chr2R_20520001 RAL-375 787 chr2R 20761670 20761700 chr2R 20761822 20761854 4 148 3.0 0.0 1.5 1.6 184 chr2R 20761670 intergenic not near genes chr2R 20761762 intergenic not near genes chr2R 20761854 intergenic not near genes chr2R_4_20760001 chr2R_20760001 RAL-375 788 chr2R 20783316 20783332 chr2R 20788083 20788104 F-element 9 4771 3.0 2.0 2.5 2.6 4788 chr2R 20783316 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_9_20785001 chr2R_20785001 RAL-375 789 chr2R 20796046 20796075 chr2R 20796159 20796187 17 113 2.0 4.5 3.2 4.0 141 chr2R 20796046 intergenic not near genes chr2R 20796116 intergenic not near genes chr2R 20796187 intergenic not near genes chr2R_17_20795001 chr2R_20795001 RAL-375 790 chr2R 21258492 21258497 chr2R 21258564 21258575 4 76 0.0 6.5 3.2 1.0 83 chr2R 21258492 intron Rgk3 + chr2R 21258534 intron Rgk3 + chr2R 21258575 intron Rgk3 + chr2R_4_21255001 chr2R_21255001 RAL-375 791 chr2R 21277183 21277219 chr2R 21277394 21277429 12 210 1.0 2.0 1.5 4.8 246 chr2R 21277183 intron Rgk3 + chr2R 21277306 intron Rgk3 + chr2R 21277429 intron Rgk3 + chr2R_12_21275001 chr2R_21275001 RAL-375 792 chr2R 21598965 21598995 chr2R 21599125 21599155 9 160 2.5 1.5 2.0 3.0 190 chr2R 21598965 intergenic not near genes chr2R 21599060 intergenic not near genes chr2R 21599155 intergenic not near genes chr2R_9_21595001 chr2R_21595001 RAL-375 793 chr2R 21700158 21700183 chr2R 21700244 21700269 7 85 4.0 6.0 5.0 1.2 111 chr2R 21700158 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700269 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-375 794 chr2R 21753088 21753115 chr2R 21753573 21753600 roo 7 484 2.0 5.0 3.5 1.6 512 chr2R 21753088 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-375 795 chr2R 21809524 21809558 chr2R 21817764 21817798 roo 15 8238 2.5 3.5 3.0 3.8 8274 chr2R 21809524 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_15_21810001 chr2R_21810001 RAL-375 796 chr2R 21963198 21963215 chr2R 21963283 21963300 6 85 2.5 2.5 2.5 1.7 102 chr2R 21963198 intergenic not near genes chr2R 21963249 intergenic not near genes chr2R 21963300 intergenic not near genes chr2R_6_21960001 chr2R_21960001 RAL-375 797 chr2R 22012997 22013008 chr2R 22013092 22013102 5 95 2.5 3.5 3.0 1.2 105 chr2R 22012997 intron CG34370 - chr2R 22013050 intron CG34370 - chr2R 22013102 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-375 798 chr2R 22037794 22037800 chr2R 22037876 22037882 6 82 0.5 0.0 0.2 5.0 88 chr2R 22037794 intron CG34370 - chr2R 22037838 intron CG34370 - chr2R 22037882 intron CG34370 - chr2R_6_22035001 chr2R_22035001 RAL-375 799 chr2R 22185675 22185706 chr2R 22185774 22185805 12 99 3.0 0.0 1.5 4.8 130 chr2R 22185675 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185805 3` UTR MED16 + chr2R_12_22185001 chr2R_22185001 RAL-375 800 chr2R 22248848 22248873 chr2R 22248924 22248949 11 73 1.0 5.0 3.0 2.8 101 chr2R 22248848 intron dve + chr2R 22248898 intron dve + chr2R 22248949 intron dve + chr2R_11_22245001 chr2R_22245001 RAL-375 801 chr2R 22349690 22349711 chr2R 22351474 22351495 jockey 5 1780 6.5 2.0 4.2 1.0 1805 chr2R 22349690 intron Liprin-gamma - chr2R 22350592 intron Liprin-gamma - chr2R 22351495 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-375 802 chr2R 22360379 22360412 chr2R 22360812 22360823 jockey 15 430 2.5 4.0 3.2 3.6 444 chr2R 22360379 intron Liprin-gamma - chr2R 22360601 intron Liprin-gamma - chr2R 22360823 intron Liprin-gamma - chr2R_15_22360001 chr2R_22360001 RAL-375 803 chr2R 22460381 22460406 chr2R 22460460 22460484 4 78 3.0 3.0 3.0 1.0 103 chr2R 22460381 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-375 804 chr2R 22499852 22499882 chr2R 22499928 22499958 11 76 0.5 3.0 1.8 3.9 106 chr2R 22499852 intron px - chr2R 22499905 intron px - chr2R 22499958 intron px - chr2R_11_22495001 chr2R_22495001 RAL-375 805 chr2R 22525747 22525785 chr2R 22529302 22529340 jockey 11 3555 2.0 5.5 3.8 2.3 3593 chr2R 22525747 intron px - chr2R 22527544 intron px - chr2R 22529340 intron px - chr2R_11_22525001 chr2R_22525001 RAL-375 806 chr2R 22537436 22537461 chr2R 22537809 22537834 11 372 3.0 6.0 4.5 2.0 398 chr2R 22537436 intron px - chr2R 22537635 intron px - chr2R 22537834 intron px - chr2R_11_22535001 chr2R_22535001 RAL-375 807 chr2R 22580438 22580443 chr2R 22586582 22586587 diver 4 6144 1.0 3.5 2.2 1.2 6149 chr2R 22580438 intron dnr1 - chr2R 22583512 intron dnr1 - chr2R 22586587 intron dnr1 - chr2R_4_22580001 chr2R_22580001 RAL-375 808 chr2R 22623459 22623485 chr2R 22623598 22623625 16 138 2.5 5.0 3.8 3.3 166 chr2R 22623459 intron CG33143 + chr2R 22623542 intron CG33143 + chr2R 22623625 intron CG33143 + chr2R_16_22620001 chr2R_22620001 RAL-375 809 chr2R 22723234 22723266 chr2R 22723310 22723342 9 76 1.0 4.5 2.8 2.4 108 chr2R 22723234 intron jbug - chr2R 22723288 intron jbug - chr2R 22723342 intron jbug - chr2R_9_22720001 chr2R_22720001 RAL-375 810 chr2R 22756551 22756585 chr2R 22756628 22756662 11 74 6.0 5.0 5.5 1.7 111 chr2R 22756551 intron,intron CG42260 -,CR30267 + chr2R 22756606 intron,intron CG42260 -,CR30267 + chr2R 22756662 intron,intron CG42260 -,CR30267 + chr2R_11_22755001 chr2R_22755001 RAL-375 811 chr2R 22774964 22775002 chr2R 22775383 22775421 jockey 10 419 2.0 3.5 2.8 2.6 457 chr2R 22774964 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-375 812 chr2R 22843021 22843050 chr2R 22844982 22845012 flea 6 1962 6.0 1.5 3.8 1.2 1991 chr2R 22843021 intergenic CG9826 + chr2R 22844016 intergenic not near genes chr2R 22845012 intergenic not near genes chr2R_6_22840001 chr2R_22840001 RAL-375 813 chr2R 22945057 22945082 chr2R 22945171 22945196 13 114 7.5 4.5 6.0 1.9 139 chr2R 22945057 exon CG42694 + chr2R 22945126 3` UTR CG42694 + chr2R 22945196 intergenic CG42694 + chr2R_13_22945001 chr2R_22945001 RAL-375 814 chr2R 22957056 22957062 chr2R 22957135 22957141 4 79 2.5 5.0 3.8 0.8 85 chr2R 22957056 intergenic CR44780 - chr2R 22957098 intergenic CR44780 - chr2R 22957141 intergenic CR44780 - chr2R_4_22955001 chr2R_22955001 RAL-375 815 chr2R 22978309 22978316 chr2R 22978388 22978395 5 79 0.5 8.0 4.2 1.0 86 chr2R 22978309 intergenic not near genes chr2R 22978352 intergenic not near genes chr2R 22978395 intergenic not near genes chr2R_5_22975001 chr2R_22975001 RAL-375 816 chr2R 23007513 23007528 chr2R 23007591 23007606 5 78 4.0 1.5 2.8 1.3 93 chr2R 23007513 intron twi + chr2R 23007560 intron twi + chr2R 23007606 intron twi + chr2R_5_23005001 chr2R_23005001 RAL-375 817 chr2R 23133315 23133325 chr2R 23133528 23133538 4 213 0.5 4.0 2.2 1.2 223 chr2R 23133315 intergenic not near genes chr2R 23133426 intergenic not near genes chr2R 23133538 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-375 818 chr2R 23158349 23158355 chr2R 23158425 23158431 4 75 2.5 6.0 4.2 0.8 82 chr2R 23158349 intron CG9899 + chr2R 23158390 intron CG9899 + chr2R 23158431 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-375 819 chr2R 23188561 23188590 chr2R 23188639 23188668 7 78 0.5 2.5 1.5 2.8 107 chr2R 23188561 intron CG34371 - chr2R 23188614 intron CG34371 - chr2R 23188668 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-375 820 chr2R 23221834 23221852 chr2R 23222115 23222133 10 280 5.5 1.0 3.2 2.4 299 chr2R 23221834 intergenic not near genes chr2R 23221984 intergenic not near genes chr2R 23222133 intergenic not near genes chr2R_10_23220001 chr2R_23220001 RAL-375 821 chr2R 23224171 23224196 chr2R 23224288 23224313 4 116 2.0 2.5 2.2 1.2 142 chr2R 23224171 intergenic not near genes chr2R 23224242 intergenic not near genes chr2R 23224313 intergenic not near genes chr2R_4_23220001 chr2R_23220001 RAL-375 822 chr2R 23402619 23402640 chr2R 23407691 23407716 flea 5 5075 3.0 3.0 3.0 1.2 5097 chr2R 23402619 intergenic CG3520 - chr2R 23405168 intergenic not near genes chr2R 23407716 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-375 823 chr2R 23422645 23422679 chr2R 23422725 23422755 12 79 3.5 3.0 3.2 2.9 110 chr2R 23422645 intron CG9815 - chr2R 23422700 intron CG9815 - chr2R 23422755 intron CG9815 - chr2R_12_23420001 chr2R_23420001 RAL-375 824 chr2R 23423740 23423770 chr2R 23423898 23423928 10 157 4.0 3.5 3.8 2.1 188 chr2R 23423740 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423928 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-375 825 chr2R 23441689 23441719 chr2R 23441779 23441809 11 89 4.0 3.5 3.8 2.3 120 chr2R 23441689 intergenic not near genes chr2R 23441749 intergenic not near genes chr2R 23441809 intergenic not near genes chr2R_11_23440001 chr2R_23440001 RAL-375 826 chr2R 23516968 23516999 chr2R 23517068 23517088 14 98 2.5 3.5 3.0 3.5 120 chr2R 23516968 intergenic not near genes chr2R 23517028 intergenic not near genes chr2R 23517088 intergenic not near genes chr2R_14_23515001 chr2R_23515001 RAL-375 827 chr2R 23522428 23522446 chr2R 23522492 23522524 6 75 2.5 4.5 3.5 1.3 96 chr2R 23522428 intron RabX1 - chr2R 23522476 intron RabX1 - chr2R 23522524 intron RabX1 - chr2R_6_23520001 chr2R_23520001 RAL-375 828 chr2R 23529572 23529600 chr2R 23537148 23537159 412 6 7572 2.5 2.5 2.5 1.7 7587 chr2R 23529572 intron bw - chr2R 23533366 intron bw - chr2R 23537159 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-375 829 chr2R 23563904 23563918 chr2R 23563984 23563997 4 80 1.5 6.0 3.8 0.8 93 chr2R 23563904 3` UTR Pi3K59F + chr2R 23563950 3` UTR Pi3K59F + chr2R 23563997 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_4_23560001 chr2R_23560001 RAL-375 830 chr2R 23607040 23607193 chr2R 23607121 23607286 14 84 4.0 3.0 3.5 3.1 246 chr2R 23607040 intron CG17664 - chr2R 23607163 intron CG17664 - chr2R 23607286 intron CG17664 - chr2R_14_23605001 chr2R_23605001 RAL-375 831 chr2R 23718289 23718315 chr2R 23718431 23718456 6 145 23.0 31.5 27.2 0.2 167 chr2R 23718289 intron Sesn + chr2R 23718372 intron Sesn + chr2R 23718456 intron Sesn + chr2R_6_23715001 chr2R_23715001 RAL-375 832 chr2R 23784473 23784504 chr2R 23784551 23784582 10 77 3.0 1.5 2.2 3.1 109 chr2R 23784473 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784582 intron CG9850 - chr2R_10_23780001 chr2R_23780001 RAL-375 833 chr2R 23914322 23914330 chr2R 23921945 23921954 412 5 7623 2.5 7.5 5.0 0.8 7632 chr2R 23914322 exon kcc + chr2R 23918138 intron kcc + chr2R 23921954 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-375 834 chr2R 23986522 23986548 chr2R 23986602 23986628 11 80 0.5 4.0 2.2 3.4 106 chr2R 23986522 intron Phm - chr2R 23986575 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_11_23985001 chr2R_23985001 RAL-375 835 chr2R 24031380 24031414 chr2R 24031464 24031498 18 83 1.5 2.0 1.8 6.4 118 chr2R 24031380 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_18_24030001 chr2R_24030001 RAL-375 836 chr2R 24077784 24077960 chr2R 24077893 24078036 10 79 1.5 18.5 10.0 0.9 252 chr2R 24077784 3` UTR Mlp60A + chr2R 24077910 3` UTR Mlp60A + chr2R 24078036 3` UTR Mlp60A + chr2R_10_24075001 chr2R_24075001 RAL-375 837 chr2R 24147072 24147098 chr2R 24154644 24154676 412 5 7573 3.0 7.0 5.0 0.8 7604 chr2R 24147072 intron Dat + chr2R 24150874 intron Dat + chr2R 24154676 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-375 838 chr2R 24177234 24177268 chr2R 24184719 24184753 412 11 7485 4.5 1.5 3.0 2.8 7519 chr2R 24177234 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_11_24180001 chr2R_24180001 RAL-375 839 chr2R 24353430 24353458 chr2R 24361791 24361819 roo 9 8361 4.0 5.5 4.8 1.6 8389 chr2R 24353430 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361819 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-375 840 chr2R 24636904 24636931 chr2R 24636990 24637017 10 86 2.0 0.0 1.0 5.0 113 chr2R 24636904 intron CG13594 - chr2R 24636960 intron CG13594 - chr2R 24637017 intron CG13594 - chr2R_10_24635001 chr2R_24635001 RAL-375 841 chr2R 24722370 24722398 chr2R 24722452 24722480 13 82 5.0 7.0 6.0 1.9 110 chr2R 24722370 intron Mid1 - chr2R 24722425 intron Mid1 - chr2R 24722480 intron Mid1 - chr2R_13_24720001 chr2R_24720001 RAL-375 842 chr2R 24727885 24727912 chr2R 24735393 24735415 mdg1 12 7506 3.5 3.5 3.5 2.7 7530 chr2R 24727885 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735415 intron Mid1 - chr2R_12_24730001 chr2R_24730001 RAL-375 843 chr2R 24763628 24763638 chr2R 24765589 24765614 G2 5 1966 5.5 5.5 5.5 0.8 1986 chr2R 24763628 exon CG3894 + chr2R 24764621 intron CG3894 + chr2R 24765614 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-375 844 chr2R 24805724 24805751 chr2R 24805813 24805840 7 89 2.0 4.0 3.0 1.8 116 chr2R 24805724 intergenic not near genes chr2R 24805782 intergenic not near genes chr2R 24805840 intergenic not near genes chr2R_7_24805001 chr2R_24805001 RAL-375 845 chr2R 24859842 24859871 chr2R 24859928 24859944 9 82 2.0 1.0 1.5 3.6 102 chr2R 24859842 5` UTR CR44829 + chr2R 24859893 5` UTR CR44829 + chr2R 24859944 5` UTR CR44829 + chr2R_9_24855001 chr2R_24855001 RAL-375 846 chr2R 24884053 24884078 chr2R 24884135 24884160 8 82 2.5 4.5 3.5 1.8 107 chr2R 24884053 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884160 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-375 847 chr2R 25004892 25004923 chr2R 25004970 25005001 14 76 5.5 3.5 4.5 2.5 109 chr2R 25004892 intron zip - chr2R 25004946 intron zip - chr2R 25005001 intron zip - chr2R_14_25000001 chr2R_25000001 RAL-375 848 chr2R 25014549 25014568 chr2R 25014624 25014644 8 76 3.5 7.5 5.5 1.2 95 chr2R 25014549 intron uzip + chr2R 25014596 intron uzip + chr2R 25014644 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-375 849 chr2R 25018343 25018375 chr2R 25018441 25018476 12 101 2.0 3.5 2.8 3.2 133 chr2R 25018343 intron uzip + chr2R 25018410 intron uzip + chr2R 25018476 intron uzip + chr2R_12_25015001 chr2R_25015001 RAL-375 850 chr2R 25022639 25022672 chr2R 25022723 25022756 17 84 3.5 5.5 4.5 3.1 117 chr2R 25022639 intron uzip + chr2R 25022698 intron uzip + chr2R 25022756 intron uzip + chr2R_17_25020001 chr2R_25020001 RAL-375 851 chr2R 25101276 25101309 chr2R 25101378 25101411 8 101 2.0 2.0 2.0 2.7 135 chr2R 25101276 intron lov - chr2R 25101344 intron lov - chr2R 25101411 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-375 852 chr2R 25122961 25122993 chr2R 25123040 25123072 6 79 1.0 1.0 1.0 3.0 111 chr2R 25122961 intron lov - chr2R 25123016 intron lov - chr2R 25123072 intron lov - chr2R_6_25120001 chr2R_25120001 RAL-375 853 chr2R 25141651 25141669 chr2R 25159341 25159359 roo 6 17690 8.0 4.5 6.2 0.8 17708 chr2R 25141651 intergenic not near genes chr2R 25150505 intergenic not near genes chr2R 25159359 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-375 854 chr2R 25180766 25180793 chr2R 25180843 25180870 4 77 0.5 2.0 1.2 1.8 104 chr2R 25180766 intergenic not near genes chr2R 25180818 intergenic not near genes chr2R 25180870 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-375 855 chr2R 25181102 25181136 chr2R 25181199 25181233 6 97 5.0 4.0 4.5 1.1 131 chr2R 25181102 intergenic not near genes chr2R 25181168 intergenic not near genes chr2R 25181233 intergenic not near genes chr2R_6_25180001 chr2R_25180001 RAL-375 856 chr3L 34681 34697 chr3L 34783 34799 5 101 7.5 3.5 5.5 0.8 118 chr3L 34681 intergenic not near genes chr3L 34740 intergenic not near genes chr3L 34799 intergenic not near genes chr3L_5_30001 chr3L_30001 RAL-375 857 chr3L 48756 48788 chr3L 48841 48872 11 82 2.5 5.0 3.8 2.3 116 chr3L 48756 intergenic not near genes chr3L 48814 intergenic not near genes chr3L 48872 intergenic not near genes chr3L_11_45001 chr3L_45001 RAL-375 858 chr3L 68983 69013 chr3L 69070 69100 5 86 3.0 0.5 1.8 1.8 117 chr3L 68983 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69100 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-375 859 chr3L 71934 71963 chr3L 72016 72046 7 83 2.0 5.0 3.5 1.6 112 chr3L 71934 intergenic CR43988 - chr3L 71990 intergenic CR43988 - chr3L 72046 intergenic CR43988 - chr3L_7_70001 chr3L_70001 RAL-375 860 chr3L 110216 110235 chr3L 119382 119402 roo 9 9167 3.5 4.0 3.8 1.9 9186 chr3L 110216 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119402 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-375 861 chr3L 122119 122129 chr3L 122199 122208 5 80 3.5 1.0 2.2 1.6 89 chr3L 122119 intergenic not near genes chr3L 122164 intergenic not near genes chr3L 122208 intergenic not near genes chr3L_5_120001 chr3L_120001 RAL-375 862 chr3L 164786 164819 chr3L 164958 164991 18 172 27.0 28.0 27.5 0.6 205 chr3L 164786 intron p130CAS + chr3L 164888 intron p130CAS + chr3L 164991 intron p130CAS + chr3L_18_160001 chr3L_160001 RAL-375 863 chr3L 402688 402718 chr3L 409741 409771 297 13 7052 6.0 9.0 7.5 1.5 7083 chr3L 402688 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_13_405001 chr3L_405001 RAL-375 864 chr3L 416136 416160 chr3L 416223 416248 8 88 2.0 3.5 2.8 2.1 112 chr3L 416136 intergenic not near genes chr3L 416192 intergenic not near genes chr3L 416248 intergenic not near genes chr3L_8_415001 chr3L_415001 RAL-375 865 chr3L 459983 460006 chr3L 460060 460083 13 76 2.0 4.5 3.2 3.1 100 chr3L 459983 intron klar - chr3L 460033 intron klar - chr3L 460083 intron klar - chr3L_13_460001 chr3L_460001 RAL-375 866 chr3L 535044 535078 chr3L 535126 535159 11 81 4.0 2.5 3.2 2.6 115 chr3L 535044 intron klar - chr3L 535102 intron klar - chr3L 535159 intron klar - chr3L_11_535001 chr3L_535001 RAL-375 867 chr3L 606892 606923 chr3L 606968 607002 4 76 1.5 0.0 0.8 2.2 110 chr3L 606892 intergenic Reg-2 - chr3L 606947 intergenic Reg-2 - chr3L 607002 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-375 868 chr3L 642469 642500 chr3L 642560 642591 5 91 2.5 3.0 2.8 1.3 122 chr3L 642469 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642591 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-375 869 chr3L 651386 651423 chr3L 651474 651510 14 87 4.0 2.5 3.2 3.3 124 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651510 intergenic CG3402 -,Gale + chr3L_14_650001 chr3L_650001 RAL-375 870 chr3L 705898 705922 chr3L 705994 706018 11 96 4.5 3.5 4.0 2.2 120 chr3L 705898 intergenic CG13895 -,CR44514 + chr3L 705958 3` UTR CG13895 - chr3L 706018 3` UTR CG13895 - chr3L_11_705001 chr3L_705001 RAL-375 871 chr3L 712601 712637 chr3L 712824 712863 12 224 1.5 1.5 1.5 4.8 262 chr3L 712601 intergenic not near genes chr3L 712732 intergenic not near genes chr3L 712863 intergenic not near genes chr3L_12_710001 chr3L_710001 RAL-375 872 chr3L 719553 719584 chr3L 719667 719699 9 115 1.5 4.0 2.8 2.4 146 chr3L 719553 intergenic not near genes chr3L 719626 intergenic not near genes chr3L 719699 intergenic not near genes chr3L_9_715001 chr3L_715001 RAL-375 873 chr3L 746495 746524 chr3L 746580 746608 12 85 1.5 3.0 2.2 3.8 113 chr3L 746495 intron hng3 - chr3L 746552 intron hng3 - chr3L 746608 intron hng3 - chr3L_12_745001 chr3L_745001 RAL-375 874 chr3L 804828 804859 chr3L 804906 804936 13 80 1.0 6.0 3.5 2.9 108 chr3L 804828 intergenic not near genes chr3L 804882 intergenic not near genes chr3L 804936 intergenic not near genes chr3L_13_800001 chr3L_800001 RAL-375 875 chr3L 857999 858019 chr3L 866480 866496 Tirant 5 8476 6.0 2.5 4.2 1.0 8497 chr3L 857999 intergenic not near genes chr3L 862248 intergenic not near genes chr3L 866496 intergenic CG12502 + chr3L_5_860001 chr3L_860001 RAL-375 876 chr3L 878199 878213 chr3L 878280 878294 6 81 3.5 3.5 3.5 1.3 95 chr3L 878199 intron,3` UTR CG32479 +,CG13907 - chr3L 878246 intron,3` UTR CG32479 +,CG13907 - chr3L 878294 intron,3` UTR CG32479 +,CG13907 - chr3L_6_875001 chr3L_875001 RAL-375 877 chr3L 925179 925210 chr3L 932603 932636 mdg1 7 7426 1.5 1.0 1.2 3.2 7457 chr3L 925179 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-375 878 chr3L 933876 933904 chr3L 934009 934034 9 133 0.0 5.0 2.5 2.6 158 chr3L 933876 intron Glut1 + chr3L 933955 intron Glut1 + chr3L 934034 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-375 879 chr3L 939776 939804 chr3L 940897 940917 jockey 6 1120 4.5 3.0 3.8 1.2 1141 chr3L 939776 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940917 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-375 880 chr3L 947723 947753 chr3L 947807 947837 9 83 1.0 1.5 1.2 4.1 114 chr3L 947723 intron Glut1 + chr3L 947780 intron Glut1 + chr3L 947837 intron Glut1 + chr3L_9_945001 chr3L_945001 RAL-375 881 chr3L 1040555 1040578 chr3L 1040639 1040662 13 83 5.0 3.0 4.0 2.6 107 chr3L 1040555 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040662 intron bab1 - chr3L_13_1040001 chr3L_1040001 RAL-375 882 chr3L 1047379 1047385 chr3L 1055181 1055197 412 4 7807 0.5 5.5 3.0 1.0 7818 chr3L 1047379 intron bab1 - chr3L 1051288 intron bab1 - chr3L 1055197 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-375 883 chr3L 1109635 1109661 chr3L 1109723 1109749 12 88 4.5 4.0 4.2 2.3 114 chr3L 1109635 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109749 intergenic not near genes chr3L_12_1105001 chr3L_1105001 RAL-375 884 chr3L 1145241 1145264 chr3L 1145319 1145343 7 77 2.0 0.0 1.0 3.5 102 chr3L 1145241 intron bab2 - chr3L 1145292 intron bab2 - chr3L 1145343 intron bab2 - chr3L_7_1145001 chr3L_1145001 RAL-375 885 chr3L 1219595 1219625 chr3L 1227328 1227349 412 11 7731 2.0 8.5 5.2 1.8 7754 chr3L 1219595 intron mwh + chr3L 1223472 intron mwh + chr3L 1227349 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-375 886 chr3L 1257633 1257653 chr3L 1257713 1257733 10 79 0.0 5.0 2.5 2.9 100 chr3L 1257633 intron CG9134 + chr3L 1257683 intron CG9134 + chr3L 1257733 intron CG9134 + chr3L_10_1255001 chr3L_1255001 RAL-375 887 chr3L 1324622 1324657 chr3L 1324700 1324734 4 78 4.0 3.5 3.8 0.8 112 chr3L 1324622 intron Myo61F + chr3L 1324678 intron Myo61F + chr3L 1324734 intron Myo61F + chr3L_4_1320001 chr3L_1320001 RAL-375 888 chr3L 1361296 1361315 chr3L 1361372 1361391 4 75 1.5 4.5 3.0 1.0 95 chr3L 1361296 intron Ptp61F - chr3L 1361344 intron Ptp61F - chr3L 1361391 intron Ptp61F - chr3L_4_1360001 chr3L_1360001 RAL-375 889 chr3L 1374435 1374457 chr3L 1374510 1374517 8 74 5.5 5.0 5.2 1.3 82 chr3L 1374435 intron,intron Ptp61F -,ru + chr3L 1374476 intron,intron Ptp61F -,ru + chr3L 1374517 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-375 890 chr3L 1396745 1396759 chr3L 1396829 1396843 5 84 5.0 8.5 6.8 0.6 98 chr3L 1396745 intron Ptp61F - chr3L 1396794 intron Ptp61F - chr3L 1396843 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-375 891 chr3L 1501999 1502026 chr3L 1502080 1502106 10 80 2.0 3.5 2.8 2.6 107 chr3L 1501999 intron pUf68 - chr3L 1502052 intron pUf68 - chr3L 1502106 intron pUf68 - chr3L_10_1500001 chr3L_1500001 RAL-375 892 chr3L 1505995 1506032 chr3L 1513592 1513628 17.6 13 7597 5.0 4.5 4.8 2.2 7633 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-375 893 chr3L 1569523 1569530 chr3L 1569599 1569606 4 76 2.5 8.5 5.5 0.6 83 chr3L 1569523 5` UTR CG12004 + chr3L 1569564 intron CG12004 + chr3L 1569606 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-375 894 chr3L 1683564 1683592 chr3L 1683646 1683652 13 79 3.0 3.5 3.2 3.1 88 chr3L 1683564 intron CG7991 + chr3L 1683608 intron CG7991 + chr3L 1683652 intron CG7991 + chr3L_13_1680001 chr3L_1680001 RAL-375 895 chr3L 1740850 1740881 chr3L 1741096 1741124 pogo 14 240 4.0 1.5 2.8 3.7 274 chr3L 1740850 intron Gk + chr3L 1740987 intron Gk + chr3L 1741124 intron Gk + chr3L_14_1740001 chr3L_1740001 RAL-375 896 chr3L 1746604 1746621 chr3L 1746704 1746721 6 99 3.5 5.0 4.2 1.2 117 chr3L 1746604 intergenic CG13921 + chr3L 1746662 intergenic CG13921 + chr3L 1746721 intergenic CG13921 + chr3L_6_1745001 chr3L_1745001 RAL-375 897 chr3L 1754695 1754718 chr3L 1754814 1754837 12 116 5.0 3.0 4.0 2.4 142 chr3L 1754695 intron Cht2 - chr3L 1754766 intron Cht2 - chr3L 1754837 intron Cht2 - chr3L_12_1750001 chr3L_1750001 RAL-375 898 chr3L 1879129 1879140 chr3L 1879206 1879218 5 78 4.0 1.5 2.8 1.3 89 chr3L 1879129 intron CG13937 - chr3L 1879174 intron CG13937 - chr3L 1879218 intron CG13937 - chr3L_5_1875001 chr3L_1875001 RAL-375 899 chr3L 1885158 1885186 chr3L 1885236 1885266 15 80 0.0 1.5 0.8 8.3 108 chr3L 1885158 intergenic Aprt -,Tmhs + chr3L 1885212 intergenic Aprt -,Tmhs + chr3L 1885266 intergenic Aprt -,Tmhs + chr3L_15_1885001 chr3L_1885001 RAL-375 900 chr3L 1946045 1946052 chr3L 1946125 1946133 4 80 8.0 2.5 5.2 0.6 88 chr3L 1946045 exon mu2 - chr3L 1946089 exon mu2 - chr3L 1946133 exon mu2 - chr3L_4_1945001 chr3L_1945001 RAL-375 901 chr3L 1946053 1946073 chr3L 1946124 1946154 4 78 6.0 2.5 4.2 0.8 101 chr3L 1946053 exon mu2 - chr3L 1946104 exon mu2 - chr3L 1946154 exon mu2 - chr3L_4_1945001 chr3L_1945001 RAL-375 902 chr3L 1988840 1988873 chr3L 1989019 1989051 13 178 2.5 3.0 2.8 3.4 211 chr3L 1988840 intergenic not near genes chr3L 1988946 intergenic not near genes chr3L 1989051 intergenic not near genes chr3L_13_1985001 chr3L_1985001 RAL-375 903 chr3L 2139206 2139234 chr3L 2139286 2139315 7 81 1.5 2.5 2.0 2.3 109 chr3L 2139206 intron zormin - chr3L 2139260 intron zormin - chr3L 2139315 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-375 904 chr3L 2168774 2168806 chr3L 2168865 2168897 16 91 4.0 3.5 3.8 3.3 123 chr3L 2168774 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_16_2165001 chr3L_2165001 RAL-375 905 chr3L 2184497 2184523 chr3L 2184596 2184622 8 99 1.5 0.5 1.0 4.0 125 chr3L 2184497 intergenic not near genes chr3L 2184560 intergenic not near genes chr3L 2184622 intergenic not near genes chr3L_8_2180001 chr3L_2180001 RAL-375 906 chr3L 2194254 2194276 chr3L 2194648 2194670 4 394 1.0 2.5 1.8 1.4 416 chr3L 2194254 intergenic not near genes chr3L 2194462 intergenic not near genes chr3L 2194670 intergenic not near genes chr3L_4_2190001 chr3L_2190001 RAL-375 907 chr3L 2308002 2308033 chr3L 2308108 2308139 11 106 1.5 2.5 2.0 3.7 137 chr3L 2308002 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308139 intergenic not near genes chr3L_11_2305001 chr3L_2305001 RAL-375 908 chr3L 2321159 2321182 chr3L 2321236 2321259 6 76 1.5 2.5 2.0 2.0 100 chr3L 2321159 intergenic not near genes chr3L 2321209 intergenic not near genes chr3L 2321259 intergenic not near genes chr3L_6_2320001 chr3L_2320001 RAL-375 909 chr3L 2331580 2331604 chr3L 2331657 2331681 10 77 2.5 3.5 3.0 2.5 101 chr3L 2331580 intron MsR1 + chr3L 2331630 intron MsR1 + chr3L 2331681 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-375 910 chr3L 2380341 2380370 chr3L 2380418 2380446 18 76 3.0 1.5 2.2 5.6 105 chr3L 2380341 intergenic not near genes chr3L 2380394 intergenic not near genes chr3L 2380446 intergenic not near genes chr3L_18_2380001 chr3L_2380001 RAL-375 911 chr3L 2429063 2429077 chr3L 2429156 2429170 5 90 2.5 3.0 2.8 1.3 107 chr3L 2429063 intron CG45186 + chr3L 2429116 intron CG45186 + chr3L 2429170 intron CG45186 + chr3L_5_2425001 chr3L_2425001 RAL-375 912 chr3L 2447503 2447537 chr3L 2456659 2456693 roo 10 9154 2.5 4.5 3.5 2.2 9190 chr3L 2447503 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-375 913 chr3L 2534619 2534639 chr3L 2534702 2534722 7 82 0.0 7.0 3.5 1.6 103 chr3L 2534619 intron Spn - chr3L 2534670 intron Spn - chr3L 2534722 exon Spn - chr3L_7_2530001 chr3L_2530001 RAL-375 914 chr3L 2561526 2561554 chr3L 2561603 2561631 16 77 4.0 2.5 3.2 3.8 105 chr3L 2561526 intron msn - chr3L 2561578 intron msn - chr3L 2561631 intron msn - chr3L_16_2560001 chr3L_2560001 RAL-375 915 chr3L 2568183 2568213 chr3L 2568264 2568294 9 76 3.0 1.5 2.2 2.8 111 chr3L 2568183 intron msn - chr3L 2568238 intron msn - chr3L 2568294 intron msn - chr3L_9_2565001 chr3L_2565001 RAL-375 916 chr3L 2683942 2683964 chr3L 2684018 2684040 7 76 6.0 1.0 3.5 1.6 98 chr3L 2683942 intron Fife - chr3L 2683991 intron Fife - chr3L 2684040 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-375 917 chr3L 2699527 2699555 chr3L 2699625 2699648 6 90 1.0 4.0 2.5 1.7 121 chr3L 2699527 intron Fife - chr3L 2699588 intron Fife - chr3L 2699648 intron Fife - chr3L_6_2695001 chr3L_2695001 RAL-375 918 chr3L 2751454 2751465 chr3L 2755748 2755760 F-element 4 4295 5.5 7.5 6.5 0.5 4306 chr3L 2751454 intron Mrtf - chr3L 2753607 intron Mrtf - chr3L 2755760 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-375 919 chr3L 2854478 2854501 chr3L 2854555 2854567 9 76 3.0 2.0 2.5 2.6 89 chr3L 2854478 intron CG43444 - chr3L 2854522 intron CG43444 - chr3L 2854567 intron CG43444 - chr3L_9_2850001 chr3L_2850001 RAL-375 920 chr3L 2882113 2882143 chr3L 2882189 2882219 12 76 2.0 4.0 3.0 3.0 106 chr3L 2882113 intergenic not near genes chr3L 2882166 intergenic not near genes chr3L 2882219 intergenic not near genes chr3L_12_2880001 chr3L_2880001 RAL-375 921 chr3L 2885364 2885374 chr3L 2888374 2888385 4 3010 8.5 24.5 16.5 0.2 3021 chr3L 2885364 intron spz5 - chr3L 2886874 exon spz5 - chr3L 2888385 intron spz5 - chr3L_4_2885001 chr3L_2885001 RAL-375 922 chr3L 2885141 2885168 chr3L 2888640 2888667 5 3499 13.5 25.0 19.2 0.2 3526 chr3L 2885141 intron spz5 - chr3L 2886904 exon spz5 - chr3L 2888667 intron spz5 - chr3L_5_2885001 chr3L_2885001 RAL-375 923 chr3L 2927840 2927870 chr3L 2936117 2936146 Tirant 6 8277 2.5 3.5 3.0 1.5 8306 chr3L 2927840 intron Shab + chr3L 2931993 intron Shab + chr3L 2936146 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-375 924 chr3L 3028342 3028359 chr3L 3028421 3028438 6 76 3.0 1.0 2.0 2.0 96 chr3L 3028342 intergenic not near genes chr3L 3028390 intergenic not near genes chr3L 3028438 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-375 925 chr3L 3040327 3040350 chr3L 3042114 3042139 S-element 6 1788 2.5 1.5 2.0 2.0 1812 chr3L 3040327 3` UTR CG2162 + chr3L 3041233 intergenic not near genes chr3L 3042139 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-375 926 chr3L 3048413 3048445 chr3L 3048490 3048522 11 77 3.5 2.5 3.0 2.8 109 chr3L 3048413 intron Sk2 + chr3L 3048468 intron Sk2 + chr3L 3048522 intron Sk2 + chr3L_11_3045001 chr3L_3045001 RAL-375 927 chr3L 3061302 3061312 chr3L 3069884 3069895 Tirant 5 8583 3.0 5.0 4.0 1.0 8593 chr3L 3061302 intron CG32486 - chr3L 3065598 intron CG32486 - chr3L 3069895 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-375 928 chr3L 3178731 3178760 chr3L 3178814 3178843 6 83 3.5 0.5 2.0 2.0 112 chr3L 3178731 intergenic CG14964 -,Girdin + chr3L 3178787 intergenic Girdin +,CG14964 - chr3L 3178843 intergenic Girdin +,CG14964 - chr3L_6_3175001 chr3L_3175001 RAL-375 929 chr3L 3254088 3254115 chr3L 3254179 3254206 16 91 2.5 3.5 3.0 4.0 118 chr3L 3254088 5` UTR CR43626 + chr3L 3254147 5` UTR CR43626 + chr3L 3254206 5` UTR CR43626 + chr3L_16_3250001 chr3L_3250001 RAL-375 930 chr3L 3263710 3263737 chr3L 3263793 3263820 5 83 1.5 1.0 1.2 2.3 110 chr3L 3263710 intron ckd + chr3L 3263765 intron ckd + chr3L 3263820 intron ckd + chr3L_5_3260001 chr3L_3260001 RAL-375 931 chr3L 3281448 3281464 chr3L 3281944 3281960 Doc 5 495 4.0 9.5 6.8 0.6 512 chr3L 3281448 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281960 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-375 932 chr3L 3281465 3281475 chr3L 3281933 3281970 Doc 7 488 1.0 7.0 4.0 1.4 505 chr3L 3281465 intron CG12017 + chr3L 3281718 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-375 933 chr3L 3307415 3307443 chr3L 3307495 3307523 9 80 1.5 3.0 2.2 2.8 108 chr3L 3307415 intron ZnT63C + chr3L 3307469 intron ZnT63C + chr3L 3307523 intron ZnT63C + chr3L_9_3305001 chr3L_3305001 RAL-375 934 chr3L 3317533 3317566 chr3L 3317612 3317645 11 77 1.0 2.0 1.5 4.4 112 chr3L 3317533 intergenic Drsl5 +,PIG-C - chr3L 3317589 intergenic PIG-C -,Drsl5 + chr3L 3317645 intergenic PIG-C - chr3L_11_3315001 chr3L_3315001 RAL-375 935 chr3L 3388583 3388612 chr3L 3388675 3388704 8 92 4.5 3.5 4.0 1.6 121 chr3L 3388583 intergenic not near genes chr3L 3388644 intergenic not near genes chr3L 3388704 intergenic not near genes chr3L_8_3385001 chr3L_3385001 RAL-375 936 chr3L 3431962 3431969 chr3L 3432058 3432065 6 96 1.5 4.0 2.8 1.6 103 chr3L 3431962 intron eIF5B - chr3L 3432014 intron eIF5B - chr3L 3432065 intron eIF5B - chr3L_6_3430001 chr3L_3430001 RAL-375 937 chr3L 3436288 3436313 chr3L 3436367 3436391 5 79 1.0 3.5 2.2 1.6 103 chr3L 3436288 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436391 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-375 938 chr3L 3475081 3475112 chr3L 3475525 3475556 jockey 13 443 2.0 4.5 3.2 3.1 475 chr3L 3475081 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_13_3475001 chr3L_3475001 RAL-375 939 chr3L 3573167 3573193 chr3L 3573250 3573276 7 83 2.5 2.0 2.2 2.2 109 chr3L 3573167 intron Eip63E + chr3L 3573222 intron Eip63E + chr3L 3573276 intron Eip63E + chr3L_7_3570001 chr3L_3570001 RAL-375 940 chr3L 3601299 3601321 chr3L 3606610 3606632 copia 10 5309 7.5 2.0 4.8 1.7 5333 chr3L 3601299 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_10_3600001 chr3L_3600001 RAL-375 941 chr3L 3627235 3627263 chr3L 3627340 3627368 12 105 1.0 3.5 2.2 3.8 133 chr3L 3627235 intron dar1 + chr3L 3627302 intron dar1 + chr3L 3627368 intron dar1 + chr3L_12_3625001 chr3L_3625001 RAL-375 942 chr3L 3766739 3766747 chr3L 3766824 3766833 4 85 3.0 0.5 1.8 1.4 94 chr3L 3766739 intron CG32264 - chr3L 3766786 intron CG32264 - chr3L 3766833 intron CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-375 943 chr3L 3777065 3777067 chr3L 22908066 22908066 4 19131000 5.5 25.5 15.5 0.2 19131001 chr3L 3777065 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_13340001 chr3L_13340001 RAL-375 944 chr3L 3798040 3798067 chr3L 3798120 3798146 4 80 3.0 2.5 2.8 1.1 106 chr3L 3798040 intron CG32264 - chr3L 3798093 intron CG32264 - chr3L 3798146 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-375 945 chr3L 3815055 3815084 chr3L 3815136 3815165 14 81 3.0 3.5 3.2 3.3 110 chr3L 3815055 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815165 intron,intron Scsalpha +,CR43932 - chr3L_14_3815001 chr3L_3815001 RAL-375 946 chr3L 3833739 3833762 chr3L 3833980 3834003 pogo 5 241 4.0 3.5 3.8 1.0 264 chr3L 3833739 intron enc + chr3L 3833871 intron enc + chr3L 3834003 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-375 947 chr3L 3872289 3872297 chr3L 3872382 3872390 4 93 2.0 8.0 5.0 0.7 101 chr3L 3872289 intergenic not near genes chr3L 3872340 intergenic not near genes chr3L 3872390 intergenic not near genes chr3L_4_3870001 chr3L_3870001 RAL-375 948 chr3L 3935830 3935846 chr3L 3935907 3935923 4 78 1.0 2.5 1.8 1.4 93 chr3L 3935830 5` UTR Eip63F-2 + chr3L 3935876 5` UTR Eip63F-2 + chr3L 3935923 5` UTR Eip63F-2 + chr3L_4_3935001 chr3L_3935001 RAL-375 949 chr3L 4096170 4096197 chr3L 4096607 4096632 5 436 4.0 0.0 2.0 1.7 462 chr3L 4096170 intron CG14995 - chr3L 4096401 intron CG14995 - chr3L 4096632 intron CG14995 - chr3L_5_4095001 chr3L_4095001 RAL-375 950 chr3L 4229739 4229767 chr3L 4229831 4229861 4 89 3.0 5.5 4.2 0.8 122 chr3L 4229739 intron ImpL2 - chr3L 4229800 intron ImpL2 - chr3L 4229861 intron ImpL2 - chr3L_4_4225001 chr3L_4225001 RAL-375 951 chr3L 4344890 4345066 chr3L 4344997 4345142 7 94 0.0 0.0 0.0 7.0 252 chr3L 4344890 intron Cip4 - chr3L 4345016 intron Cip4 - chr3L 4345142 intron Cip4 - chr3L_7_4345001 chr3L_4345001 RAL-375 952 chr3L 4364225 4364233 chr3L 4364289 4364322 4 83 0.0 2.0 1.0 2.0 97 chr3L 4364225 intergenic Cip4 -,mRpS6 + chr3L 4364274 intergenic Cip4 -,mRpS6 + chr3L 4364322 intergenic Cip4 -,mRpS6 + chr3L_4_4360001 chr3L_4360001 RAL-375 953 chr3L 4384894 4384924 chr3L 4384987 4385017 11 92 2.5 5.0 3.8 2.3 123 chr3L 4384894 intron slow + chr3L 4384956 intron slow + chr3L 4385017 intron slow + chr3L_11_4380001 chr3L_4380001 RAL-375 954 chr3L 4495869 4495889 chr3L 4495943 4495968 5 77 5.5 4.5 5.0 0.8 99 chr3L 4495869 intergenic not near genes chr3L 4495918 intergenic not near genes chr3L 4495968 intergenic not near genes chr3L_5_4495001 chr3L_4495001 RAL-375 955 chr3L 4516834 4516859 chr3L 4516911 4516936 13 77 4.5 5.0 4.8 2.2 102 chr3L 4516834 intron Tie - chr3L 4516885 intron Tie - chr3L 4516936 intron Tie - chr3L_13_4515001 chr3L_4515001 RAL-375 956 chr3L 4599516 4599533 chr3L 4599653 4599670 10 137 0.0 6.5 3.2 2.4 154 chr3L 4599516 intron Src64B - chr3L 4599593 intron Src64B - chr3L 4599670 intron Src64B - chr3L_10_4595001 chr3L_4595001 RAL-375 957 chr3L 4652570 4652601 chr3L 4652653 4652683 16 83 2.0 3.0 2.5 4.6 113 chr3L 4652570 intron axo - chr3L 4652626 intron axo - chr3L 4652683 intron axo - chr3L_16_4650001 chr3L_4650001 RAL-375 958 chr3L 4676036 4676052 chr3L 4676117 4676130 5 80 2.5 0.0 1.2 2.3 94 chr3L 4676036 intron axo - chr3L 4676083 intron axo - chr3L 4676130 intron axo - chr3L_5_4675001 chr3L_4675001 RAL-375 959 chr3L 4688950 4688979 chr3L 4689028 4689062 9 81 2.5 4.5 3.5 2.0 112 chr3L 4688950 3` UTR CG18418 - chr3L 4689006 3` UTR CG18418 - chr3L 4689062 exon CG18418 - chr3L_9_4685001 chr3L_4685001 RAL-375 960 chr3L 4797962 4797984 chr3L 4798042 4798064 6 78 5.0 3.0 4.0 1.2 102 chr3L 4797962 intergenic not near genes chr3L 4798013 intergenic not near genes chr3L 4798064 intergenic not near genes chr3L_6_4795001 chr3L_4795001 RAL-375 961 chr3L 4858306 4858331 chr3L 4858396 4858420 9 85 4.0 7.0 5.5 1.4 114 chr3L 4858306 intergenic not near genes chr3L 4858363 intergenic not near genes chr3L 4858420 intergenic not near genes chr3L_9_4855001 chr3L_4855001 RAL-375 962 chr3L 4901131 4901157 chr3L 4907321 4907347 diver 10 6190 3.0 3.5 3.2 2.4 6216 chr3L 4901131 intergenic CG13704 + chr3L 4904239 intergenic not near genes chr3L 4907347 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-375 963 chr3L 4958415 4958446 chr3L 4958503 4958533 14 82 4.0 3.5 3.8 2.9 118 chr3L 4958415 intron Con - chr3L 4958474 intron Con - chr3L 4958533 intron Con - chr3L_14_4955001 chr3L_4955001 RAL-375 964 chr3L 4967147 4967161 chr3L 4967253 4967268 4 106 2.5 2.0 2.2 1.2 121 chr3L 4967147 intron Con - chr3L 4967208 intron Con - chr3L 4967268 intron Con - chr3L_4_4965001 chr3L_4965001 RAL-375 965 chr3L 4990478 4990505 chr3L 4990565 4990593 6 88 2.0 3.0 2.5 1.7 115 chr3L 4990478 intron Con - chr3L 4990536 intron Con - chr3L 4990593 intron Con - chr3L_6_4990001 chr3L_4990001 RAL-375 966 chr3L 5034163 5034181 chr3L 5043315 5043333 roo 5 9152 3.5 5.0 4.2 1.0 9170 chr3L 5034163 intron Con - chr3L 5038748 intron Con - chr3L 5043333 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-375 967 chr3L 5045454 5045483 chr3L 5050235 5050264 Doc 8 4781 3.0 3.0 3.0 2.0 4810 chr3L 5045454 intron Con - chr3L 5047859 intron Con - chr3L 5050264 intron Con - chr3L_8_5045001 chr3L_5045001 RAL-375 968 chr3L 5063091 5063121 chr3L 5063402 5063432 9 311 2.5 2.5 2.5 2.6 341 chr3L 5063091 intron Con - chr3L 5063262 intron Con - chr3L 5063432 intron Con - chr3L_9_5060001 chr3L_5060001 RAL-375 969 chr3L 5101208 5101222 chr3L 5101288 5101301 5 80 3.5 4.0 3.8 1.0 93 chr3L 5101208 intergenic not near genes chr3L 5101254 intergenic not near genes chr3L 5101301 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-375 970 chr3L 5103615 5103634 chr3L 5103695 5103714 6 80 4.5 0.0 2.2 1.9 99 chr3L 5103615 intergenic not near genes chr3L 5103664 intergenic not near genes chr3L 5103714 intergenic not near genes chr3L_6_5100001 chr3L_5100001 RAL-375 971 chr3L 5104484 5104507 chr3L 5124618 5124641 9 20134 2.0 2.5 2.2 2.8 20157 chr3L 5104484 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124641 intergenic not near genes chr3L_9_5110001 chr3L_5110001 RAL-375 972 chr3L 5223419 5223445 chr3L 5223501 5223527 6 82 4.5 3.5 4.0 1.2 108 chr3L 5223419 intron shep - chr3L 5223473 intron shep - chr3L 5223527 intron shep - chr3L_6_5220001 chr3L_5220001 RAL-375 973 chr3L 5265222 5265251 chr3L 5265414 5265442 9 192 8.0 5.0 6.5 1.2 220 chr3L 5265222 intron shep - chr3L 5265332 intron shep - chr3L 5265442 intron shep - chr3L_9_5265001 chr3L_5265001 RAL-375 974 chr3L 5284105 5284130 chr3L 5284194 5284219 7 89 1.0 1.5 1.2 3.2 114 chr3L 5284105 intergenic not near genes chr3L 5284162 intergenic not near genes chr3L 5284219 intergenic not near genes chr3L_7_5280001 chr3L_5280001 RAL-375 975 chr3L 5299153 5299178 chr3L 5306589 5306614 Quasimodo 5 7436 2.0 1.0 1.5 2.0 7461 chr3L 5299153 intergenic not near genes chr3L 5302884 intergenic not near genes chr3L 5306614 intergenic not near genes chr3L_5_5300001 chr3L_5300001 RAL-375 976 chr3L 5316955 5316966 chr3L 5317040 5317050 5 84 7.5 6.0 6.8 0.6 95 chr3L 5316955 intergenic not near genes chr3L 5317002 intergenic not near genes chr3L 5317050 intergenic not near genes chr3L_5_5315001 chr3L_5315001 RAL-375 977 chr3L 5351105 5351134 chr3L 5351189 5351219 8 85 3.0 2.5 2.8 2.1 114 chr3L 5351105 intron lama - chr3L 5351162 intron lama - chr3L 5351219 intron lama - chr3L_8_5350001 chr3L_5350001 RAL-375 978 chr3L 5485051 5485074 chr3L 5485132 5485156 8 82 1.5 1.5 1.5 3.2 105 chr3L 5485051 intergenic not near genes chr3L 5485104 intergenic not near genes chr3L 5485156 intergenic not near genes chr3L_8_5485001 chr3L_5485001 RAL-375 979 chr3L 5522001 5522026 chr3L 5522269 5522294 12 267 8.5 2.0 5.2 1.9 293 chr3L 5522001 intron Lkr - chr3L 5522148 intron Lkr - chr3L 5522294 intron Lkr - chr3L_12_5520001 chr3L_5520001 RAL-375 980 chr3L 5526965 5527201 chr3L 5527051 5527306 10 101 2.5 0.0 1.2 4.5 341 chr3L 5526965 intron Lkr - chr3L 5527136 intron Lkr - chr3L 5527306 intron Lkr - chr3L_10_5525001 chr3L_5525001 RAL-375 981 chr3L 5537722 5537755 chr3L 5538063 5538097 jockey 10 342 2.5 5.0 3.8 2.1 375 chr3L 5537722 intergenic not near genes chr3L 5537910 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_10_5535001 chr3L_5535001 RAL-375 982 chr3L 5561686 5561697 chr3L 5561768 5561779 4 82 2.0 3.0 2.5 1.1 93 chr3L 5561686 intergenic Sucb -,sinu - chr3L 5561732 3` UTR Sucb - chr3L 5561779 3` UTR Sucb - chr3L_4_5560001 chr3L_5560001 RAL-375 983 chr3L 5613391 5613501 chr3L 5613501 5613628 4 118 0.0 0.0 0.0 4.0 237 chr3L 5613391 intergenic not near genes chr3L 5613510 intergenic not near genes chr3L 5613628 intergenic not near genes chr3L_4_5610001 chr3L_5610001 RAL-375 984 chr3L 5667628 5667643 chr3L 5667708 5667722 7 78 4.5 0.0 2.2 2.2 94 chr3L 5667628 intron sif + chr3L 5667675 intron sif + chr3L 5667722 intron sif + chr3L_7_5665001 chr3L_5665001 RAL-375 985 chr3L 5910032 5910059 chr3L 5910273 5910300 pogo 9 241 4.5 4.5 4.5 1.6 268 chr3L 5910032 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910300 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-375 986 chr3L 5926316 5926349 chr3L 5926506 5926516 BS 12 184 3.0 3.5 3.2 2.9 200 chr3L 5926316 intron Vap-33B + chr3L 5926416 intron Vap-33B + chr3L 5926516 intron Vap-33B + chr3L_12_5925001 chr3L_5925001 RAL-375 987 chr3L 6001685 6001712 chr3L 6004377 6004412 jockey 5 2698 3.5 1.0 2.2 1.6 2727 chr3L 6001685 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004412 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-375 988 chr3L 6028375 6028406 chr3L 6028473 6028503 6 98 1.5 4.5 3.0 1.5 128 chr3L 6028375 intergenic not near genes chr3L 6028439 intergenic not near genes chr3L 6028503 intergenic not near genes chr3L_6_6025001 chr3L_6025001 RAL-375 989 chr3L 6040279 6040306 chr3L 6040353 6040386 6 79 2.0 0.0 1.0 3.0 107 chr3L 6040279 intergenic Jon65Aiv + chr3L 6040332 intergenic Jon65Aiv + chr3L 6040386 intergenic Jon65Aiv + chr3L_6_6040001 chr3L_6040001 RAL-375 990 chr3L 6040367 6040393 chr3L 6042721 6042748 Doc 13 2356 0.5 4.0 2.2 4.1 2381 chr3L 6040367 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042748 intergenic not near genes chr3L_13_6040001 chr3L_6040001 RAL-375 991 chr3L 6052648 6052661 chr3L 6052733 6052745 5 84 9.5 10.0 9.8 0.5 97 chr3L 6052648 exon Jon65Aii + chr3L 6052696 intron Jon65Aii + chr3L 6052745 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-375 992 chr3L 6065014 6065042 chr3L 6065091 6065119 9 77 2.5 1.5 2.0 3.0 105 chr3L 6065014 intergenic not near genes chr3L 6065066 intergenic not near genes chr3L 6065119 intergenic not near genes chr3L_9_6065001 chr3L_6065001 RAL-375 993 chr3L 6071690 6071707 chr3L 6071949 6071966 6 259 2.0 2.5 2.2 1.9 276 chr3L 6071690 intergenic CG42269 +,CG6602 + chr3L 6071828 intergenic CG42269 +,CG6602 + chr3L 6071966 intergenic CG6602 +,CG42269 + chr3L_6_6070001 chr3L_6070001 RAL-375 994 chr3L 6116703 6116727 chr3L 6116787 6116811 5 84 2.0 3.5 2.8 1.3 108 chr3L 6116703 intron Ets65A + chr3L 6116757 intron Ets65A + chr3L 6116811 intron Ets65A + chr3L_5_6115001 chr3L_6115001 RAL-375 995 chr3L 6155694 6155708 chr3L 6155780 6155794 4 86 4.5 2.5 3.5 0.9 100 chr3L 6155694 intergenic CR45421 - chr3L 6155744 intergenic not near genes chr3L 6155794 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-375 996 chr3L 6220915 6220948 chr3L 6230067 6230100 roo 13 9151 5.5 4.5 5.0 2.2 9185 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-375 997 chr3L 6266394 6266403 chr3L 6266468 6266478 5 75 1.5 2.0 1.8 1.8 84 chr3L 6266394 intergenic not near genes chr3L 6266436 intergenic not near genes chr3L 6266478 intergenic not near genes chr3L_5_6265001 chr3L_6265001 RAL-375 998 chr3L 6267618 6267646 chr3L 6267702 6267730 10 84 2.0 2.5 2.2 3.1 112 chr3L 6267618 intergenic not near genes chr3L 6267674 intergenic not near genes chr3L 6267730 intergenic not near genes chr3L_10_6265001 chr3L_6265001 RAL-375 999 chr3L 6335011 6335041 chr3L 6335482 6335512 297 12 470 3.5 4.5 4.0 2.4 501 chr3L 6335011 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335512 intron CG13300 - chr3L_12_6335001 chr3L_6335001 RAL-375 1000 chr3L 6405656 6405673 chr3L 6432120 6432137 roo 6 26464 3.0 2.5 2.8 1.6 26481 chr3L 6405656 intron CG42747 + chr3L 6418896 intron CG42747 + chr3L 6432137 intron CG42747 + chr3L_6_6415001 chr3L_6415001 RAL-375 1001 chr3L 6562847 6562864 chr3L 6562927 6562944 6 80 2.5 4.5 3.5 1.3 97 chr3L 6562847 intron CG18769 + chr3L 6562896 intron CG18769 + chr3L 6562944 intron CG18769 + chr3L_6_6560001 chr3L_6560001 RAL-375 1002 chr3L 6604291 6604299 chr3L 6604368 6604376 4 77 0.0 7.5 3.8 0.8 85 chr3L 6604291 intron CG8368 + chr3L 6604334 intron CG8368 + chr3L 6604376 intron,3` UTR CG8368 +,zpg - chr3L_4_6600001 chr3L_6600001 RAL-375 1003 chr3L 6652080 6652106 chr3L 6652163 6652189 11 83 4.5 2.5 3.5 2.4 109 chr3L 6652080 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652189 intergenic not near genes chr3L_11_6650001 chr3L_6650001 RAL-375 1004 chr3L 6855920 6855956 chr3L 6860703 6860740 Doc 7 4783 2.0 1.0 1.5 2.8 4820 chr3L 6855920 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860740 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-375 1005 chr3L 6887518 6887550 chr3L 6895010 6895025 roo 13 7491 6.5 2.5 4.5 2.4 7507 chr3L 6887518 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895025 intergenic not near genes chr3L_13_6890001 chr3L_6890001 RAL-375 1006 chr3L 6909572 6909579 chr3L 6909728 6909735 4 156 6.0 5.5 5.8 0.6 163 chr3L 6909572 intergenic not near genes chr3L 6909654 intergenic not near genes chr3L 6909735 intergenic not near genes chr3L_4_6905001 chr3L_6905001 RAL-375 1007 chr3L 6909583 6909593 chr3L 6909719 6909749 9 153 3.5 5.0 4.2 1.7 166 chr3L 6909583 intergenic not near genes chr3L 6909666 intergenic not near genes chr3L 6909749 intergenic not near genes chr3L_9_6905001 chr3L_6905001 RAL-375 1008 chr3L 6974502 6974524 chr3L 6974602 6974625 10 100 0.0 3.0 1.5 4.0 123 chr3L 6974502 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974625 intron Galphai - chr3L_10_6970001 chr3L_6970001 RAL-375 1009 chr3L 7090905 7090917 chr3L 7090989 7091001 5 84 2.5 4.0 3.2 1.2 96 chr3L 7090905 intergenic not near genes chr3L 7090953 intergenic not near genes chr3L 7091001 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-375 1010 chr3L 7100426 7100460 chr3L 7100513 7100545 10 86 2.0 7.0 4.5 1.8 119 chr3L 7100426 intron form3 + chr3L 7100486 intron form3 + chr3L 7100545 intron form3 + chr3L_10_7100001 chr3L_7100001 RAL-375 1011 chr3L 7112586 7112603 chr3L 7112673 7112690 6 87 6.0 5.0 5.5 0.9 104 chr3L 7112586 intron form3 + chr3L 7112638 intron form3 + chr3L 7112690 intron form3 + chr3L_6_7110001 chr3L_7110001 RAL-375 1012 chr3L 7129947 7129986 chr3L 7130139 7130178 BS 6 192 0.5 2.5 1.5 2.4 231 chr3L 7129947 intergenic CG15829 + chr3L 7130062 intergenic CG15829 + chr3L 7130178 intergenic not near genes chr3L_6_7130001 chr3L_7130001 RAL-375 1013 chr3L 7150021 7150041 chr3L 7150100 7150120 8 78 0.0 5.0 2.5 2.3 99 chr3L 7150021 intron corn - chr3L 7150070 intron corn - chr3L 7150120 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-375 1014 chr3L 7187399 7187419 chr3L 7187481 7187501 6 82 0.0 1.5 0.8 3.3 102 chr3L 7187399 intron Dscam2 - chr3L 7187450 intron Dscam2 - chr3L 7187501 intron Dscam2 - chr3L_6_7185001 chr3L_7185001 RAL-375 1015 chr3L 7198630 7198651 chr3L 7198731 7198749 4 100 3.0 3.0 3.0 1.0 119 chr3L 7198630 intergenic not near genes chr3L 7198690 intergenic not near genes chr3L 7198749 intergenic not near genes chr3L_4_7195001 chr3L_7195001 RAL-375 1016 chr3L 7209385 7209413 chr3L 7209466 7209480 7 75 5.0 3.0 4.0 1.4 95 chr3L 7209385 intergenic not near genes chr3L 7209432 intergenic not near genes chr3L 7209480 intergenic not near genes chr3L_7_7205001 chr3L_7205001 RAL-375 1017 chr3L 7222461 7222470 chr3L 7222540 7222544 5 79 4.5 3.5 4.0 1.0 83 chr3L 7222461 intergenic CR45410 + chr3L 7222502 intergenic CR45410 + chr3L 7222544 intergenic CR45410 + chr3L_5_7220001 chr3L_7220001 RAL-375 1018 chr3L 7225541 7225571 chr3L 7225634 7225643 7 88 4.0 3.5 3.8 1.5 102 chr3L 7225541 intergenic not near genes chr3L 7225592 intergenic not near genes chr3L 7225643 intergenic not near genes chr3L_7_7225001 chr3L_7225001 RAL-375 1019 chr3L 7235800 7235832 chr3L 7235878 7235910 9 78 4.5 0.0 2.2 2.8 110 chr3L 7235800 3` UTR CG14826 + chr3L 7235855 3` UTR CG14826 + chr3L 7235910 3` UTR CG14826 + chr3L_9_7235001 chr3L_7235001 RAL-375 1020 chr3L 7285451 7285477 chr3L 7285529 7285555 11 77 3.5 2.5 3.0 2.8 104 chr3L 7285451 intron unc-13-4A - chr3L 7285503 intron unc-13-4A - chr3L 7285555 intron unc-13-4A - chr3L_11_7285001 chr3L_7285001 RAL-375 1021 chr3L 7460372 7460406 chr3L 7460456 7460490 9 84 1.0 2.5 1.8 3.2 118 chr3L 7460372 intergenic not near genes chr3L 7460431 intergenic not near genes chr3L 7460490 intergenic not near genes chr3L_9_7460001 chr3L_7460001 RAL-375 1022 chr3L 7462958 7462968 chr3L 7463035 7463045 4 77 0.5 2.0 1.2 1.8 87 chr3L 7462958 intergenic not near genes chr3L 7463002 intergenic not near genes chr3L 7463045 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-375 1023 chr3L 7475219 7475251 chr3L 7475298 7475331 13 78 4.5 3.5 4.0 2.6 112 chr3L 7475219 intergenic CG43292 + chr3L 7475275 intergenic CG43292 + chr3L 7475331 intergenic CG43292 + chr3L_13_7475001 chr3L_7475001 RAL-375 1024 chr3L 7485838 7485863 chr3L 7486173 7486192 8 334 4.0 4.5 4.2 1.5 354 chr3L 7485838 intergenic mthl6 + chr3L 7486015 5` UTR mthl6 + chr3L 7486192 exon mthl6 + chr3L_8_7485001 chr3L_7485001 RAL-375 1025 chr3L 7498765 7498788 chr3L 7503542 7503565 F-element 8 4777 2.5 3.0 2.8 2.1 4800 chr3L 7498765 5` UTR CG8539 - chr3L 7501165 intergenic not near genes chr3L 7503565 intergenic not near genes chr3L_8_7500001 chr3L_7500001 RAL-375 1026 chr3L 7505791 7505793 chr3L 7505866 7505881 5 86 15.5 9.0 12.2 0.4 90 chr3L 7505791 exon CG7548 - chr3L 7505836 exon CG7548 - chr3L 7505881 exon CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-375 1027 chr3L 7574854 7574860 chr3L 7574931 7574937 4 77 0.0 0.5 0.2 3.3 83 chr3L 7574854 intergenic not near genes chr3L 7574896 intergenic not near genes chr3L 7574937 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-375 1028 chr3L 7576215 7576244 chr3L 7576303 7576305 8 84 3.5 2.0 2.8 2.1 90 chr3L 7576215 intergenic not near genes chr3L 7576260 intergenic not near genes chr3L 7576305 intergenic not near genes chr3L_8_7575001 chr3L_7575001 RAL-375 1029 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 15.0 14.5 14.8 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-375 1030 chr3L 7769316 7769322 chr3L 7769406 7769416 4 93 0.0 7.5 3.8 0.8 100 chr3L 7769316 intron Clk - chr3L 7769366 intron Clk - chr3L 7769416 intron Clk - chr3L_4_7765001 chr3L_7765001 RAL-375 1031 chr3L 7793716 7793739 chr3L 7800767 7800791 297 6 7052 4.0 5.5 4.8 1.0 7075 chr3L 7793716 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800791 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-375 1032 chr3L 7857350 7857377 chr3L 7857428 7857455 8 78 1.0 4.0 2.5 2.3 105 chr3L 7857350 intron Pdp1 - chr3L 7857402 intron Pdp1 - chr3L 7857455 intron Pdp1 - chr3L_8_7855001 chr3L_7855001 RAL-375 1033 chr3L 7886526 7886546 chr3L 7889043 7889064 Stalker4 6 2518 0.5 3.5 2.0 2.0 2538 chr3L 7886526 intron CG32365 + chr3L 7887795 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-375 1034 chr3L 7916831 7916859 chr3L 7926002 7926023 roo 7 9170 4.0 4.0 4.0 1.4 9192 chr3L 7916831 3` UTR syd - chr3L 7921427 intron syd - chr3L 7926023 3` UTR syd - chr3L_7_7920001 chr3L_7920001 RAL-375 1035 chr3L 7939458 7939470 chr3L 7939540 7939552 5 82 1.0 2.5 1.8 1.8 94 chr3L 7939458 intergenic not near genes chr3L 7939505 intergenic not near genes chr3L 7939552 intergenic not near genes chr3L_5_7935001 chr3L_7935001 RAL-375 1036 chr3L 7985369 7985391 chr3L 7987697 7987719 NOF 12 2328 4.5 3.5 4.0 2.4 2350 chr3L 7985369 intron nmo + chr3L 7986544 intron nmo + chr3L 7987719 intron nmo + chr3L_12_7985001 chr3L_7985001 RAL-375 1037 chr3L 8019699 8019732 chr3L 8024111 8024141 NOF 5 4411 4.0 3.0 3.5 1.1 4442 chr3L 8019699 intron nmo + chr3L 8021920 intron nmo + chr3L 8024141 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-375 1038 chr3L 8026606 8026627 chr3L 8026684 8026705 4 78 1.5 0.0 0.8 2.2 99 chr3L 8026606 intron nmo + chr3L 8026656 intron nmo + chr3L 8026705 intron nmo + chr3L_4_8025001 chr3L_8025001 RAL-375 1039 chr3L 8041557 8041565 chr3L 8041635 8041643 4 78 3.5 4.0 3.8 0.8 86 chr3L 8041557 intron nmo + chr3L 8041600 intron nmo + chr3L 8041643 intron nmo + chr3L_4_8040001 chr3L_8040001 RAL-375 1040 chr3L 8075364 8075391 chr3L 8075450 8075477 8 86 2.5 3.5 3.0 2.0 113 chr3L 8075364 intron Ect4 + chr3L 8075420 intron Ect4 + chr3L 8075477 intron Ect4 + chr3L_8_8075001 chr3L_8075001 RAL-375 1041 chr3L 8295789 8295823 chr3L 8295947 8295981 9 158 5.0 3.0 4.0 1.8 192 chr3L 8295789 intergenic CG7201 - chr3L 8295885 intergenic not near genes chr3L 8295981 intergenic not near genes chr3L_9_8295001 chr3L_8295001 RAL-375 1042 chr3L 8317596 8317596 chr3L 22908066 22908068 6 14590471 0.0 25.5 12.8 0.4 14590472 chr3L 8317596 intergenic not near genes chr3L 15612832 intergenic CG13449 -,comm3 - chr3L 22908068 intergenic not near genes chr3L_6_15610001 chr3L_15610001 RAL-375 1043 chr3L 8392764 8392788 chr3L 8392851 8392868 7 86 2.5 2.5 2.5 2.0 104 chr3L 8392764 intergenic Jon66Cii -,Jon66Ci + chr3L 8392816 intergenic Jon66Cii -,Jon66Ci + chr3L 8392868 exon Jon66Cii - chr3L_7_8390001 chr3L_8390001 RAL-375 1044 chr3L 8451389 8451411 chr3L 8451467 8451489 11 78 2.5 3.5 3.0 2.8 100 chr3L 8451389 intron Gug + chr3L 8451439 intron Gug + chr3L 8451489 intron Gug + chr3L_11_8450001 chr3L_8450001 RAL-375 1045 chr3L 8481782 8481804 chr3L 8490941 8490955 roo 4 9157 0.5 6.0 3.2 1.0 9173 chr3L 8481782 intron CG43163 - chr3L 8486368 intron CG43163 - chr3L 8490955 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-375 1046 chr3L 8498295 8498326 chr3L 8505762 8505793 blood 10 7467 4.5 0.5 2.5 2.9 7498 chr3L 8498295 intron CG43163 - chr3L 8502044 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_10_8500001 chr3L_8500001 RAL-375 1047 chr3L 8579853 8579878 chr3L 8579933 8579954 4 79 2.0 4.5 3.2 1.0 101 chr3L 8579853 intron CG43078 + chr3L 8579904 intron CG43078 + chr3L 8579954 intron CG43078 + chr3L_4_8575001 chr3L_8575001 RAL-375 1048 chr3L 8593159 8593174 chr3L 8593236 8593251 6 77 6.0 2.0 4.0 1.2 92 chr3L 8593159 intron CG43078 + chr3L 8593205 intron CG43078 + chr3L 8593251 intron CG43078 + chr3L_6_8590001 chr3L_8590001 RAL-375 1049 chr3L 8782126 8782148 chr3L 8782252 8782274 8 126 6.0 1.0 3.5 1.8 148 chr3L 8782126 intron Fhos + chr3L 8782200 intron Fhos + chr3L 8782274 intron Fhos + chr3L_8_8780001 chr3L_8780001 RAL-375 1050 chr3L 8791278 8791292 chr3L 8796698 8796712 I-element 4 5420 9.0 0.0 4.5 0.7 5434 chr3L 8791278 exon Fhos + chr3L 8793995 intron Fhos + chr3L 8796712 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-375 1051 chr3L 8861521 8861554 chr3L 8861612 8861645 11 91 1.5 3.0 2.2 3.4 124 chr3L 8861521 intron dally + chr3L 8861583 intron dally + chr3L 8861645 intron dally + chr3L_11_8860001 chr3L_8860001 RAL-375 1052 chr3L 9003954 9003975 chr3L 9004039 9004060 9 84 2.5 2.5 2.5 2.6 106 chr3L 9003954 intergenic not near genes chr3L 9004007 intergenic not near genes chr3L 9004060 intergenic not near genes chr3L_9_9000001 chr3L_9000001 RAL-375 1053 chr3L 9013691 9013693 chr3L 18417066 18417066 17 9403375 21.0 8.0 14.5 1.1 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_17_13715001 chr3L_13715001 RAL-375 1054 chr3L 9036280 9036304 chr3L 9036364 9036389 7 85 4.0 6.0 5.0 1.2 109 chr3L 9036280 intergenic not near genes chr3L 9036334 intergenic not near genes chr3L 9036389 intergenic not near genes chr3L_7_9035001 chr3L_9035001 RAL-375 1055 chr3L 9076926 9076951 chr3L 9084486 9084511 412 14 7560 8.5 5.0 6.8 1.8 7585 chr3L 9076926 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084511 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-375 1056 chr3L 9164695 9164731 chr3L 9166162 9166198 hobo 13 1465 2.5 3.5 3.0 3.2 1503 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_13_9165001 chr3L_9165001 RAL-375 1057 chr3L 9219242 9219261 chr3L 9219914 9219933 jockey 6 668 7.0 4.5 5.8 0.9 691 chr3L 9219242 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219933 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-375 1058 chr3L 9232883 9232899 chr3L 9232965 9232981 8 81 3.0 1.0 2.0 2.7 98 chr3L 9232883 intergenic not near genes chr3L 9232932 intergenic not near genes chr3L 9232981 intergenic not near genes chr3L_8_9230001 chr3L_9230001 RAL-375 1059 chr3L 9256646 9256664 chr3L 9256734 9256753 7 89 4.0 2.0 3.0 1.8 107 chr3L 9256646 intron GluRIB + chr3L 9256700 intron GluRIB + chr3L 9256753 intron GluRIB + chr3L_7_9255001 chr3L_9255001 RAL-375 1060 chr3L 9270637 9270650 chr3L 9278388 9278398 roo 5 7749 1.0 2.0 1.5 2.0 7761 chr3L 9270637 intron GluRIB + chr3L 9274518 intron GluRIB + chr3L 9278398 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-375 1061 chr3L 9348481 9348487 chr3L 9348975 9348989 4 500 2.5 0.0 1.2 1.8 508 chr3L 9348481 intergenic PGRP-LC + chr3L 9348735 intergenic PGRP-LC + chr3L 9348989 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-375 1062 chr3L 9359586 9359602 chr3L 9359677 9359693 8 91 4.5 2.0 3.2 1.9 107 chr3L 9359586 3` UTR CG32039 + chr3L 9359640 3` UTR CG32039 + chr3L 9359693 3` UTR CG32039 + chr3L_8_9355001 chr3L_9355001 RAL-375 1063 chr3L 9359609 9359621 chr3L 9359697 9359712 5 90 1.0 4.0 2.5 1.4 103 chr3L 9359609 3` UTR CG32039 + chr3L 9359660 3` UTR CG32039 + chr3L 9359712 3` UTR CG32039 + chr3L_5_9355001 chr3L_9355001 RAL-375 1064 chr3L 9443511 9443535 chr3L 9445301 9445326 S-element 9 1791 4.0 3.5 3.8 1.9 1815 chr3L 9443511 intron CG33926 + chr3L 9444418 intron CG33926 + chr3L 9445326 intron CG33926 + chr3L_9_9440001 chr3L_9440001 RAL-375 1065 chr3L 9492413 9492433 chr3L 9492485 9492514 16 80 4.5 1.0 2.8 4.2 101 chr3L 9492413 intergenic CG32037 - chr3L 9492464 intergenic CG32037 - chr3L 9492514 intergenic CG32037 - chr3L_16_9490001 chr3L_9490001 RAL-375 1066 chr3L 9498205 9498233 chr3L 9498282 9498310 7 77 0.5 2.5 1.5 2.8 105 chr3L 9498205 intron path - chr3L 9498258 intron path - chr3L 9498310 intron path - chr3L_7_9495001 chr3L_9495001 RAL-375 1067 chr3L 9501701 9501733 chr3L 9502187 9502219 roo 8 486 1.5 2.5 2.0 2.7 518 chr3L 9501701 intron path - chr3L 9501960 intron path - chr3L 9502219 intron path - chr3L_8_9500001 chr3L_9500001 RAL-375 1068 chr3L 9502615 9502643 chr3L 9502695 9502723 9 80 2.0 1.5 1.8 3.2 108 chr3L 9502615 intron path - chr3L 9502669 intron path - chr3L 9502723 intron path - chr3L_9_9500001 chr3L_9500001 RAL-375 1069 chr3L 9510915 9510952 chr3L 9511006 9511029 5 81 0.0 2.5 1.2 2.3 114 chr3L 9510915 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511029 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-375 1070 chr3L 9524033 9524061 chr3L 9524110 9524141 9 80 3.5 5.0 4.2 1.7 108 chr3L 9524033 intron CG33700 - chr3L 9524087 intron CG33700 - chr3L 9524141 intron CG33700 - chr3L_9_9520001 chr3L_9520001 RAL-375 1071 chr3L 9526503 9526513 chr3L 9528180 9528193 Doc 4 1679 3.5 2.5 3.0 1.0 1690 chr3L 9526503 intergenic not near genes chr3L 9527348 intergenic not near genes chr3L 9528193 intergenic not near genes chr3L_4_9525001 chr3L_9525001 RAL-375 1072 chr3L 9546654 9546675 chr3L 9546809 9546830 12 155 0.0 4.0 2.0 4.0 176 chr3L 9546654 intergenic not near genes chr3L 9546742 intergenic CG42673 + chr3L 9546830 intergenic CG42673 + chr3L_12_9545001 chr3L_9545001 RAL-375 1073 chr3L 9571922 9571933 chr3L 9572270 9572281 jockey 4 348 6.0 7.5 6.8 0.5 359 chr3L 9571922 intron CG42673 + chr3L 9572102 intron CG42673 + chr3L 9572281 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-375 1074 chr3L 9575908 9575945 chr3L 9580983 9581019 jockey 9 5073 4.0 2.5 3.2 2.1 5111 chr3L 9575908 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581019 intron CG42673 + chr3L_9_9575001 chr3L_9575001 RAL-375 1075 chr3L 9630679 9630692 chr3L 9630759 9630761 7 77 2.5 1.5 2.0 2.3 82 chr3L 9630679 intron CG8336 + chr3L 9630720 intron CG8336 + chr3L 9630761 intron CG8336 + chr3L_7_9630001 chr3L_9630001 RAL-375 1076 chr3L 9646808 9646835 chr3L 9646906 9646933 11 98 1.0 1.0 1.0 5.5 125 chr3L 9646808 intron,intron fry -,CG33696 + chr3L 9646870 intron,intron fry -,CG33696 + chr3L 9646933 intron,intron fry -,CG33696 + chr3L_11_9645001 chr3L_9645001 RAL-375 1077 chr3L 9665843 9665862 chr3L 9666059 9666078 12 216 3.0 4.0 3.5 2.7 235 chr3L 9665843 intron fry - chr3L 9665960 intron fry - chr3L 9666078 intron fry - chr3L_12_9665001 chr3L_9665001 RAL-375 1078 chr3L 9848538 9848546 chr3L 9848598 9848622 5 73 6.5 0.0 3.2 1.2 84 chr3L 9848538 intron RasGAP1 - chr3L 9848580 intron RasGAP1 - chr3L 9848622 intron RasGAP1 - chr3L_5_9845001 chr3L_9845001 RAL-375 1079 chr3L 9907163 9907175 chr3L 9907262 9907276 8 100 4.5 6.0 5.2 1.3 113 chr3L 9907163 intergenic not near genes chr3L 9907220 intergenic not near genes chr3L 9907276 intergenic not near genes chr3L_8_9905001 chr3L_9905001 RAL-375 1080 chr3L 9911264 9911297 chr3L 9911502 9911524 10 236 2.0 2.5 2.2 3.1 260 chr3L 9911264 intron CG34356 + chr3L 9911394 intron CG34356 + chr3L 9911524 intron CG34356 + chr3L_10_9910001 chr3L_9910001 RAL-375 1081 chr3L 9929670 9929697 chr3L 9938450 9938450 roo 9 8777 3.5 6.0 4.8 1.6 8780 chr3L 9929670 intron CG34356 + chr3L 9934060 intron CG34356 + chr3L 9938450 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-375 1082 chr3L 9952523 9952541 chr3L 9952600 9952626 7 84 3.5 1.0 2.2 2.2 103 chr3L 9952523 intron CG34356 + chr3L 9952574 intron CG34356 + chr3L 9952626 intron CG34356 + chr3L_7_9950001 chr3L_9950001 RAL-375 1083 chr3L 10043877 10043912 chr3L 10043959 10043994 9 82 0.5 5.5 3.0 2.2 117 chr3L 10043877 intron dpr6 + chr3L 10043936 intron dpr6 + chr3L 10043994 intron dpr6 + chr3L_9_10040001 chr3L_10040001 RAL-375 1084 chr3L 10214739 10214830 chr3L 10214826 10214932 7 98 0.0 0.0 0.0 7.0 193 chr3L 10214739 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-375 1085 chr3L 10222744 10222774 chr3L 10222824 10222854 6 80 1.0 4.5 2.8 1.6 110 chr3L 10222744 intron scramb1 - chr3L 10222799 intron scramb1 - chr3L 10222854 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-375 1086 chr3L 10308740 10308771 chr3L 10308816 10308848 13 76 5.0 4.0 4.5 2.4 108 chr3L 10308740 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_13_10305001 chr3L_10305001 RAL-375 1087 chr3L 10375227 10375256 chr3L 10375336 10375365 6 109 1.0 0.0 0.5 4.0 138 chr3L 10375227 intergenic not near genes chr3L 10375296 intergenic not near genes chr3L 10375365 intergenic not near genes chr3L_6_10375001 chr3L_10375001 RAL-375 1088 chr3L 10386395 10386405 chr3L 10386465 10386482 6 76 4.5 3.0 3.8 1.2 87 chr3L 10386395 intergenic CR45245 + chr3L 10386438 intergenic CR45245 + chr3L 10386482 5` UTR CR45245 + chr3L_6_10385001 chr3L_10385001 RAL-375 1089 chr3L 10395550 10395564 chr3L 10395687 10395717 4 148 3.5 2.5 3.0 1.0 167 chr3L 10395550 intergenic not near genes chr3L 10395634 intergenic not near genes chr3L 10395717 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-375 1090 chr3L 10414944 10414978 chr3L 10417313 10417350 Doc 7 2371 1.0 3.0 2.0 2.3 2406 chr3L 10414944 intergenic CG12362 + chr3L 10416147 intergenic not near genes chr3L 10417350 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-375 1091 chr3L 10584281 10584299 chr3L 10584368 10584386 7 87 4.0 3.0 3.5 1.6 105 chr3L 10584281 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584386 intron A2bp1 + chr3L_7_10580001 chr3L_10580001 RAL-375 1092 chr3L 10600458 10600466 chr3L 10600540 10600548 5 82 2.0 0.0 1.0 2.5 90 chr3L 10600458 intergenic not near genes chr3L 10600503 intergenic not near genes chr3L 10600548 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-375 1093 chr3L 10603714 10603724 chr3L 10603904 10603914 4 190 2.5 0.0 1.2 1.8 200 chr3L 10603714 intergenic not near genes chr3L 10603814 intergenic not near genes chr3L 10603914 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-375 1094 chr3L 10621858 10621878 chr3L 10621945 10621965 6 87 2.5 3.0 2.8 1.6 107 chr3L 10621858 intergenic not near genes chr3L 10621912 intergenic not near genes chr3L 10621965 intergenic not near genes chr3L_6_10620001 chr3L_10620001 RAL-375 1095 chr3L 10654124 10654143 chr3L 10654211 10654229 5 86 4.5 0.0 2.2 1.6 105 chr3L 10654124 intron CG32066 - chr3L 10654176 intron CG32066 - chr3L 10654229 intron CG32066 - chr3L_5_10650001 chr3L_10650001 RAL-375 1096 chr3L 10654972 10655004 chr3L 10655052 10655084 8 79 0.5 3.0 1.8 2.9 112 chr3L 10654972 intron CG32066 - chr3L 10655028 intron CG32066 - chr3L 10655084 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-375 1097 chr3L 10696378 10696402 chr3L 10696462 10696486 6 84 1.5 3.5 2.5 1.7 108 chr3L 10696378 intron NijA - chr3L 10696432 intron NijA - chr3L 10696486 intron NijA - chr3L_6_10695001 chr3L_10695001 RAL-375 1098 chr3L 10762834 10762863 chr3L 10762918 10762934 6 76 3.0 3.5 3.2 1.4 100 chr3L 10762834 intergenic not near genes chr3L 10762884 intergenic not near genes chr3L 10762934 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-375 1099 chr3L 10764129 10764158 chr3L 10764209 10764238 11 78 3.0 3.5 3.2 2.6 109 chr3L 10764129 intergenic not near genes chr3L 10764184 intergenic not near genes chr3L 10764238 intergenic not near genes chr3L_11_10760001 chr3L_10760001 RAL-375 1100 chr3L 11042116 11042143 chr3L 11042255 11042282 7 139 3.0 0.0 1.5 2.8 166 chr3L 11042116 intron CG43693 - chr3L 11042199 intron CG43693 - chr3L 11042282 intron CG43693 - chr3L_7_11040001 chr3L_11040001 RAL-375 1101 chr3L 11105293 11105327 chr3L 11107004 11107038 X-element 10 1711 3.0 7.0 5.0 1.7 1745 chr3L 11105293 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-375 1102 chr3L 11127210 11127218 chr3L 11127287 11127295 4 77 2.5 5.5 4.0 0.8 85 chr3L 11127210 intron CG42575 + chr3L 11127252 intron CG42575 + chr3L 11127295 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-375 1103 chr3L 11131811 11131819 chr3L 11132074 11132083 4 264 3.0 2.5 2.8 1.1 272 chr3L 11131811 intron CG42575 + chr3L 11131947 intron,3` UTR CG42575 +,CG32074 - chr3L 11132083 intron,exon CG42575 +,CG32074 - chr3L_4_11130001 chr3L_11130001 RAL-375 1104 chr3L 11135787 11135794 chr3L 11135872 11135879 4 84 1.0 4.0 2.5 1.1 92 chr3L 11135787 intergenic CG32082 +,CG14143 + chr3L 11135833 intergenic CG32082 +,CG14143 + chr3L 11135879 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-375 1105 chr3L 11145549 11145557 chr3L 11145639 11145647 4 90 0.0 4.0 2.0 1.3 98 chr3L 11145549 intron CG32082 + chr3L 11145598 intron CG32082 + chr3L 11145647 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-375 1106 chr3L 11241779 11241793 chr3L 11241860 11241875 4 82 1.0 1.5 1.2 1.8 96 chr3L 11241779 intergenic not near genes chr3L 11241827 intergenic not near genes chr3L 11241875 intergenic not near genes chr3L_4_11240001 chr3L_11240001 RAL-375 1107 chr3L 11262026 11262052 chr3L 11262108 11262135 6 82 4.5 3.5 4.0 1.2 109 chr3L 11262026 intergenic not near genes chr3L 11262080 intergenic not near genes chr3L 11262135 intergenic not near genes chr3L_6_11260001 chr3L_11260001 RAL-375 1108 chr3L 11264465 11264498 chr3L 11271413 11271450 17.6 11 6949 1.0 3.5 2.2 3.4 6985 chr3L 11264465 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271450 intergenic not near genes chr3L_11_11265001 chr3L_11265001 RAL-375 1109 chr3L 11277466 11277488 chr3L 11278461 11278480 Rt1a 4 994 1.0 7.5 4.2 0.8 1014 chr3L 11277466 intergenic not near genes chr3L 11277973 intergenic not near genes chr3L 11278480 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-375 1110 chr3L 11279726 11279749 chr3L 11279806 11279811 6 73 3.0 1.5 2.2 1.9 85 chr3L 11279726 intergenic not near genes chr3L 11279768 intergenic not near genes chr3L 11279811 intergenic not near genes chr3L_6_11275001 chr3L_11275001 RAL-375 1111 chr3L 11305803 11305808 chr3L 22908066 22908067 6 11602260 6.0 25.5 15.8 0.4 11602264 chr3L 11305803 intergenic not near genes chr3L 17106935 intron Rbp6 - chr3L 22908067 intergenic not near genes chr3L_6_17105001 chr3L_17105001 RAL-375 1112 chr3L 11329690 11329726 chr3L 11332895 11332931 jockey 8 3204 2.0 1.0 1.5 3.2 3241 chr3L 11329690 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332931 intergenic not near genes chr3L_8_11330001 chr3L_11330001 RAL-375 1113 chr3L 11339815 11339826 chr3L 11339944 11339956 5 130 1.0 1.5 1.2 2.3 141 chr3L 11339815 intergenic not near genes chr3L 11339886 intergenic not near genes chr3L 11339956 intergenic not near genes chr3L_5_11335001 chr3L_11335001 RAL-375 1114 chr3L 11422473 11422495 chr3L 11422562 11422583 5 89 3.0 1.5 2.2 1.6 110 chr3L 11422473 intergenic not near genes chr3L 11422528 intergenic not near genes chr3L 11422583 intergenic not near genes chr3L_5_11420001 chr3L_11420001 RAL-375 1115 chr3L 11433785 11433810 chr3L 11433865 11433890 11 80 1.5 2.5 2.0 3.7 105 chr3L 11433785 intergenic not near genes chr3L 11433838 intergenic not near genes chr3L 11433890 intergenic not near genes chr3L_11_11430001 chr3L_11430001 RAL-375 1116 chr3L 11471589 11471613 chr3L 11471667 11471690 7 78 1.5 4.5 3.0 1.8 101 chr3L 11471589 intergenic not near genes chr3L 11471640 intergenic not near genes chr3L 11471690 intergenic not near genes chr3L_7_11470001 chr3L_11470001 RAL-375 1117 chr3L 11556677 11556700 chr3L 11556754 11556777 4 76 4.5 0.0 2.2 1.2 100 chr3L 11556677 intron Mob2 - chr3L 11556727 intron Mob2 - chr3L 11556777 intron Mob2 - chr3L_4_11555001 chr3L_11555001 RAL-375 1118 chr3L 11564796 11564813 chr3L 11572417 11572438 412 5 7624 1.5 2.5 2.0 1.7 7642 chr3L 11564796 exon CG33267 + chr3L 11568617 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-375 1119 chr3L 11587923 11587955 chr3L 11587999 11588031 5 76 1.5 4.5 3.0 1.2 108 chr3L 11587923 intergenic rt - chr3L 11587977 intergenic rt - chr3L 11588031 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-375 1120 chr3L 11588731 11588755 chr3L 11588887 11588910 12 156 2.5 2.5 2.5 3.4 179 chr3L 11588731 intergenic not near genes chr3L 11588820 intergenic not near genes chr3L 11588910 intergenic not near genes chr3L_12_11585001 chr3L_11585001 RAL-375 1121 chr3L 11642823 11642832 chr3L 11642900 11642909 7 77 1.0 5.0 3.0 1.8 86 chr3L 11642823 3` UTR CG32091 + chr3L 11642866 3` UTR CG32091 + chr3L 11642909 3` UTR CG6071 - chr3L_7_11640001 chr3L_11640001 RAL-375 1122 chr3L 11723083 11723114 chr3L 11727878 11727909 Doc 10 4795 3.0 4.5 3.8 2.1 4826 chr3L 11723083 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_10_11725001 chr3L_11725001 RAL-375 1123 chr3L 11744014 11744041 chr3L 11744122 11744149 12 108 2.5 0.0 1.2 5.5 135 chr3L 11744014 exon CG6024 - chr3L 11744082 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_12_11740001 chr3L_11740001 RAL-375 1124 chr3L 802565 802566 chr3L 11777678 11777678 8 10975112 22.0 14.5 18.2 0.4 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_6290001 chr3L_6290001 RAL-375 1125 chr3L 11864555 11864584 chr3L 11865849 11865878 pogo 11 1295 5.5 3.0 4.2 2.1 1323 chr3L 11864555 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_11_11865001 chr3L_11865001 RAL-375 1126 chr3L 11943503 11943517 chr3L 11943598 11943618 4 100 0.5 4.0 2.2 1.2 115 chr3L 11943503 intergenic Rpt4R +,CG5883 - chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943618 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-375 1127 chr3L 12066368 12066402 chr3L 12066604 12066639 9 236 2.0 5.5 3.8 1.9 271 chr3L 12066368 intergenic not near genes chr3L 12066504 intergenic not near genes chr3L 12066639 intergenic not near genes chr3L_9_12065001 chr3L_12065001 RAL-375 1128 chr3L 12075430 12075453 chr3L 12075519 12075529 6 87 4.5 0.0 2.2 1.9 99 chr3L 12075430 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075529 intron Sema-5c - chr3L_6_12075001 chr3L_12075001 RAL-375 1129 chr3L 12083931 12083952 chr3L 12084115 12084136 5 184 15.5 6.0 10.8 0.4 205 chr3L 12083931 intergenic not near genes chr3L 12084034 intergenic not near genes chr3L 12084136 intergenic not near genes chr3L_5_12080001 chr3L_12080001 RAL-375 1130 chr3L 12089089 12089111 chr3L 12089169 12089191 11 80 3.5 3.5 3.5 2.4 102 chr3L 12089089 3` UTR CG17154 + chr3L 12089140 3` UTR CG17154 + chr3L 12089191 3` UTR CG17154 + chr3L_11_12085001 chr3L_12085001 RAL-375 1131 chr3L 12119761 12119789 chr3L 12119858 12119886 6 97 2.0 1.0 1.5 2.4 125 chr3L 12119761 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119886 intergenic ssp +,CG11560 + chr3L_6_12115001 chr3L_12115001 RAL-375 1132 chr3L 12158497 12158515 chr3L 12158716 12158736 6 220 20.0 15.0 17.5 0.3 239 chr3L 12158497 intron CG9760 - chr3L 12158616 intron CG9760 - chr3L 12158736 intron CG9760 - chr3L_6_12155001 chr3L_12155001 RAL-375 1133 chr3L 12158775 12158809 chr3L 12160245 12160280 19 1472 66.0 49.0 57.5 0.3 1505 chr3L 12158775 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160280 intron CG9760 - chr3L_19_12155001 chr3L_12155001 RAL-375 1134 chr3L 12170813 12170823 chr3L 12170895 12170905 5 81 1.5 7.5 4.5 0.9 92 chr3L 12170813 intron Rh7 - chr3L 12170859 intron Rh7 - chr3L 12170905 intron Rh7 - chr3L_5_12170001 chr3L_12170001 RAL-375 1135 chr3L 12255747 12255767 chr3L 12256069 12256076 5 313 21.5 19.0 20.2 0.2 329 chr3L 12255747 intron app - chr3L 12255912 intron app - chr3L 12256076 intron app - chr3L_5_12255001 chr3L_12255001 RAL-375 1136 chr3L 12304090 12304118 chr3L 12304166 12304194 8 74 2.0 3.5 2.8 2.1 104 chr3L 12304090 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-375 1137 chr3L 12353925 12353948 chr3L 12354009 12354037 9 87 3.5 2.0 2.8 2.4 112 chr3L 12353925 intergenic not near genes chr3L 12353981 intergenic not near genes chr3L 12354037 intergenic not near genes chr3L_9_12350001 chr3L_12350001 RAL-375 1138 chr3L 12369535 12369564 chr3L 12369624 12369654 6 90 1.0 3.0 2.0 2.0 119 chr3L 12369535 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369654 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-375 1139 chr3L 12406514 12406529 chr3L 12406745 12406760 5 231 2.5 4.0 3.2 1.2 246 chr3L 12406514 intron CG32103 - chr3L 12406637 intron CG32103 - chr3L 12406760 intron CG32103 - chr3L_5_12405001 chr3L_12405001 RAL-375 1140 chr3L 12467253 12467280 chr3L 12467338 12467365 4 85 0.0 3.0 1.5 1.6 112 chr3L 12467253 intron eyg - chr3L 12467309 intron eyg - chr3L 12467365 intron eyg - chr3L_4_12465001 chr3L_12465001 RAL-375 1141 chr3L 12647949 12647975 chr3L 12648025 12648051 7 76 3.5 2.5 3.0 1.8 102 chr3L 12647949 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648051 5` UTR CR32111 + chr3L_7_12645001 chr3L_12645001 RAL-375 1142 chr3L 12728041 12728044 chr3L 12728125 12728127 4 83 1.0 6.0 3.5 0.9 86 chr3L 12728041 intergenic not near genes chr3L 12728084 intergenic not near genes chr3L 12728127 intergenic not near genes chr3L_4_12725001 chr3L_12725001 RAL-375 1143 chr3L 12874934 12874963 chr3L 12877226 12877255 jockey 10 2291 2.0 3.0 2.5 2.9 2321 chr3L 12874934 intergenic not near genes chr3L 12876094 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-375 1144 chr3L 12894801 12894816 chr3L 12894879 12894894 7 78 7.5 7.5 7.5 0.8 93 chr3L 12894801 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-375 1145 chr3L 12919282 12919302 chr3L 12924746 12924775 Rt1c 6 5471 3.0 3.0 3.0 1.5 5493 chr3L 12919282 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-375 1146 chr3L 12951131 12951158 chr3L 12951206 12951235 11 77 2.5 4.0 3.2 2.6 104 chr3L 12951131 intergenic not near genes chr3L 12951183 intergenic not near genes chr3L 12951235 intergenic not near genes chr3L_11_12950001 chr3L_12950001 RAL-375 1147 chr3L 12957791 12957819 chr3L 12962273 12962300 copia 14 4481 5.0 6.0 5.5 2.2 4509 chr3L 12957791 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-375 1148 chr3L 12980518 12980550 chr3L 12980606 12980635 7 88 1.5 0.0 0.8 3.9 117 chr3L 12980518 intergenic not near genes chr3L 12980576 intergenic not near genes chr3L 12980635 intergenic not near genes chr3L_7_12980001 chr3L_12980001 RAL-375 1149 chr3L 13007694 13007721 chr3L 13007773 13007798 5 78 0.5 3.5 2.0 1.7 104 chr3L 13007694 exon CG11263 + chr3L 13007746 3` UTR CG11263 + chr3L 13007798 3` UTR CG11263 + chr3L_5_13005001 chr3L_13005001 RAL-375 1150 chr3L 13069559 13069588 chr3L 13069638 13069666 14 79 1.5 3.0 2.2 4.4 107 chr3L 13069559 intergenic not near genes chr3L 13069612 intergenic not near genes chr3L 13069666 intergenic not near genes chr3L_14_13065001 chr3L_13065001 RAL-375 1151 chr3L 13082214 13082248 chr3L 13082296 13082330 18 82 2.5 7.0 4.8 3.1 116 chr3L 13082214 3` UTR CR43652 - chr3L 13082272 3` UTR CR43652 - chr3L 13082330 3` UTR CR43652 - chr3L_18_13080001 chr3L_13080001 RAL-375 1152 chr3L 13144120 13144147 chr3L 13144197 13144224 10 77 1.0 3.0 2.0 3.3 104 chr3L 13144120 intergenic not near genes chr3L 13144172 intergenic not near genes chr3L 13144224 intergenic not near genes chr3L_10_13140001 chr3L_13140001 RAL-375 1153 chr3L 13159290 13159296 chr3L 13159369 13159373 4 78 2.0 0.0 1.0 2.0 83 chr3L 13159290 intergenic not near genes chr3L 13159332 intergenic not near genes chr3L 13159373 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-375 1154 chr3L 13223215 13223241 chr3L 13223292 13223318 7 76 0.0 4.5 2.2 2.2 103 chr3L 13223215 intergenic not near genes chr3L 13223266 intergenic not near genes chr3L 13223318 intergenic not near genes chr3L_7_13220001 chr3L_13220001 RAL-375 1155 chr3L 13296520 13296537 chr3L 13296611 13296628 4 91 3.5 4.0 3.8 0.8 108 chr3L 13296520 intergenic Sfp70A4 -,CR45253 + chr3L 13296574 3` UTR Sfp70A4 - chr3L 13296628 3` UTR Sfp70A4 - chr3L_4_13295001 chr3L_13295001 RAL-375 1156 chr3L 13301256 13301276 chr3L 13301338 13301357 4 82 0.0 0.0 0.0 4.0 101 chr3L 13301256 intergenic SP + chr3L 13301306 intergenic SP + chr3L 13301357 intergenic SP + chr3L_4_13300001 chr3L_13300001 RAL-375 1157 chr3L 13338635 13338653 chr3L 13338712 13338730 8 77 3.5 4.0 3.8 1.7 95 chr3L 13338635 intergenic not near genes chr3L 13338682 intergenic not near genes chr3L 13338730 intergenic not near genes chr3L_8_13335001 chr3L_13335001 RAL-375 1158 chr3L 13355146 13355176 chr3L 13355725 13355756 12 579 15.5 10.5 13.0 0.9 610 chr3L 13355146 intergenic CG17687 + chr3L 13355451 intergenic not near genes chr3L 13355756 intergenic not near genes chr3L_12_13355001 chr3L_13355001 RAL-375 1159 chr3L 13432294 13432321 chr3L 13432393 13432420 8 98 4.0 3.5 3.8 1.7 126 chr3L 13432294 intron CG10713 - chr3L 13432357 intron CG10713 - chr3L 13432420 intron CG10713 - chr3L_8_13430001 chr3L_13430001 RAL-375 1160 chr3L 13452668 13452681 chr3L 13452755 13452769 7 88 1.5 3.5 2.5 2.0 101 chr3L 13452668 intron CG10738 + chr3L 13452718 intron CG10738 + chr3L 13452769 intron CG10738 + chr3L_7_13450001 chr3L_13450001 RAL-375 1161 chr3L 13497072 13497102 chr3L 13497150 13497180 14 77 4.5 4.5 4.5 2.5 108 chr3L 13497072 intron Tgi + chr3L 13497126 intron Tgi + chr3L 13497180 intron Tgi + chr3L_14_13495001 chr3L_13495001 RAL-375 1162 chr3L 13525155 13525190 chr3L 13532951 13532984 roo 11 7795 3.5 4.5 4.0 2.2 7829 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_11_13525001 chr3L_13525001 RAL-375 1163 chr3L 13535908 13535938 chr3L 13535980 13536014 9 74 4.0 2.5 3.2 2.1 106 chr3L 13535908 intergenic not near genes chr3L 13535961 intergenic not near genes chr3L 13536014 intergenic not near genes chr3L_9_13535001 chr3L_13535001 RAL-375 1164 chr3L 13598217 13598227 chr3L 13598291 13598302 6 76 7.0 0.5 3.8 1.2 85 chr3L 13598217 intron bru-3 - chr3L 13598260 intron bru-3 - chr3L 13598302 intron bru-3 - chr3L_6_13595001 chr3L_13595001 RAL-375 1165 chr3L 13650603 13650623 chr3L 13650682 13650702 6 79 2.5 5.5 4.0 1.2 99 chr3L 13650603 intron bru-3 - chr3L 13650652 intron bru-3 - chr3L 13650702 intron bru-3 - chr3L_6_13650001 chr3L_13650001 RAL-375 1166 chr3L 13663274 13663290 chr3L 13663353 13663368 4 79 5.5 3.0 4.2 0.8 94 chr3L 13663274 intron bru-3 - chr3L 13663321 intron bru-3 - chr3L 13663368 intron bru-3 - chr3L_4_13660001 chr3L_13660001 RAL-375 1167 chr3L 13677528 13677559 chr3L 13677605 13677636 12 77 2.0 2.0 2.0 4.0 108 chr3L 13677528 intron bru-3 - chr3L 13677582 intron bru-3 - chr3L 13677636 intron bru-3 - chr3L_12_13675001 chr3L_13675001 RAL-375 1168 chr3L 13692588 13692615 chr3L 13692663 13692692 6 76 4.5 2.5 3.5 1.3 104 chr3L 13692588 intron bru-3 - chr3L 13692640 intron bru-3 - chr3L 13692692 intron bru-3 - chr3L_6_13690001 chr3L_13690001 RAL-375 1169 chr3L 13804547 13804567 chr3L 13822833 13822852 roo 8 18284 2.0 1.5 1.8 2.9 18305 chr3L 13804547 intergenic not near genes chr3L 13813700 intergenic not near genes chr3L 13822852 intergenic not near genes chr3L_8_13810001 chr3L_13810001 RAL-375 1170 chr3L 14194722 14194736 chr3L 14194798 14194812 5 76 2.5 1.5 2.0 1.7 90 chr3L 14194722 intron nuf + chr3L 14194767 intron nuf + chr3L 14194812 intron nuf + chr3L_5_14190001 chr3L_14190001 RAL-375 1171 chr3L 14245566 14245593 chr3L 14245660 14245687 1360 6 94 2.0 0.5 1.2 2.7 121 chr3L 14245566 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245687 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-375 1172 chr3L 14267369 14267402 chr3L 14271809 14271811 F-element 9 4434 1.5 3.0 2.2 2.8 4442 chr3L 14267369 intergenic not near genes chr3L 14269590 intergenic not near genes chr3L 14271811 intergenic not near genes chr3L_9_14265001 chr3L_14265001 RAL-375 1173 chr3L 14282588 14282605 chr3L 14282668 14282685 9 78 4.5 4.0 4.2 1.7 97 chr3L 14282588 intron fz + chr3L 14282636 intron fz + chr3L 14282685 intron fz + chr3L_9_14280001 chr3L_14280001 RAL-375 1174 chr3L 14295984 14296015 chr3L 14296467 14296500 roo 12 483 3.0 5.0 4.0 2.4 516 chr3L 14295984 intron fz + chr3L 14296242 intron fz + chr3L 14296500 intron fz + chr3L_12_14295001 chr3L_14295001 RAL-375 1175 chr3L 14302996 14303009 chr3L 14303081 14303094 4 84 0.5 0.5 0.5 2.7 98 chr3L 14302996 intron fz + chr3L 14303045 intron fz + chr3L 14303094 intron fz + chr3L_4_14300001 chr3L_14300001 RAL-375 1176 chr3L 14312036 14312058 chr3L 14316832 14316858 X-element 5 4807 1.5 1.0 1.2 2.3 4822 chr3L 14312036 exon fz + chr3L 14314447 intron fz + chr3L 14316858 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-375 1177 chr3L 14326969 14326996 chr3L 14327104 14327131 10 136 5.5 1.0 3.2 2.4 162 chr3L 14326969 intron fz + chr3L 14327050 intron fz + chr3L 14327131 intron fz + chr3L_10_14325001 chr3L_14325001 RAL-375 1178 chr3L 14468446 14468474 chr3L 14473652 14473680 copia 6 5206 3.5 4.0 3.8 1.2 5234 chr3L 14468446 intron bbg - chr3L 14471063 intron bbg - chr3L 14473680 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-375 1179 chr3L 14514693 14514696 chr3L 22908066 22908067 Stalker2 4 8393372 10.5 25.5 18.0 0.2 8393374 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-375 1180 chr3L 14546620 14546814 chr3L 14546701 14546895 15 81 0.5 3.0 1.8 5.4 275 chr3L 14546620 intron CG9238 - chr3L 14546758 intron CG9238 - chr3L 14546895 intron CG9238 - chr3L_15_14545001 chr3L_14545001 RAL-375 1181 chr3L 14623732 14623742 chr3L 14623847 14623857 5 114 2.0 4.0 3.0 1.2 125 chr3L 14623732 intron CG9628 + chr3L 14623794 intron CG9628 + chr3L 14623857 intron CG9628 + chr3L_5_14620001 chr3L_14620001 RAL-375 1182 chr3L 14684632 14684636 chr3L 14684722 14684728 4 91 4.0 3.0 3.5 0.9 96 chr3L 14684632 intron ome + chr3L 14684680 intron ome + chr3L 14684728 intron ome + chr3L_4_14680001 chr3L_14680001 RAL-375 1183 chr3L 14721180 14721205 chr3L 14723023 14723036 Rt1c 6 1841 6.5 5.0 5.8 0.9 1856 chr3L 14721180 intron ome + chr3L 14722108 intron ome + chr3L 14723036 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-375 1184 chr3L 14741151 14741169 chr3L 14741228 14741247 8 77 3.5 4.5 4.0 1.6 96 chr3L 14741151 intron ome + chr3L 14741199 intron ome + chr3L 14741247 intron ome + chr3L_8_14740001 chr3L_14740001 RAL-375 1185 chr3L 14809187 14809221 chr3L 14809268 14809302 11 81 1.5 2.0 1.8 3.9 115 chr3L 14809187 intron CG17839 + chr3L 14809244 intron CG17839 + chr3L 14809302 intron CG17839 + chr3L_11_14805001 chr3L_14805001 RAL-375 1186 chr3L 14911043 14911057 chr3L 14911121 14911135 5 78 2.0 1.5 1.8 1.8 92 chr3L 14911043 intron DCX-EMAP + chr3L 14911089 intron DCX-EMAP + chr3L 14911135 intron DCX-EMAP + chr3L_5_14910001 chr3L_14910001 RAL-375 1187 chr3L 14913905 14913930 chr3L 14913981 14914007 9 76 3.5 2.5 3.0 2.2 102 chr3L 14913905 intron DCX-EMAP + chr3L 14913956 intron DCX-EMAP + chr3L 14914007 intron DCX-EMAP + chr3L_9_14910001 chr3L_14910001 RAL-375 1188 chr3L 14954365 14954396 chr3L 14956034 14956065 transib2 10 1669 2.5 1.5 2.0 3.3 1700 chr3L 14954365 intergenic not near genes chr3L 14955215 intergenic not near genes chr3L 14956065 intergenic not near genes chr3L_10_14955001 chr3L_14955001 RAL-375 1189 chr3L 15048486 15048504 chr3L 15048596 15048614 7 110 2.0 2.0 2.0 2.3 128 chr3L 15048486 intron Sytbeta - chr3L 15048550 intron Sytbeta - chr3L 15048614 intron Sytbeta - chr3L_7_15045001 chr3L_15045001 RAL-375 1190 chr3L 15052576 15052580 chr3L 15053443 15053447 4 867 8.5 1.0 4.8 0.7 871 chr3L 15052576 intron Sytbeta - chr3L 15053012 intron,3` UTR Sytbeta -,CG43680 - chr3L 15053447 intron Sytbeta - chr3L_4_15050001 chr3L_15050001 RAL-375 1191 chr3L 15063700 15063703 chr3L 22908066 22908067 4 7844365 14.5 25.5 20.0 0.2 7844367 chr3L 15063700 intron Sytbeta - chr3L 18985884 intergenic CG11619 -,CG14075 + chr3L 22908067 intergenic not near genes chr3L_4_18985001 chr3L_18985001 RAL-375 1192 chr3L 15085047 15085083 chr3L 15086213 15086249 1360 12 1165 3.0 1.5 2.2 3.8 1202 chr3L 15085047 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086249 intron cp309 - chr3L_12_15085001 chr3L_15085001 RAL-375 1193 chr3L 15094866 15094887 chr3L 15094943 15094963 4 76 0.5 3.5 2.0 1.3 97 chr3L 15094866 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15094914 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15094963 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_4_15090001 chr3L_15090001 RAL-375 1194 chr3L 15257432 15257447 chr3L 15257645 15257659 4 210 3.0 2.5 2.8 1.1 227 chr3L 15257432 intergenic not near genes chr3L 15257546 intergenic not near genes chr3L 15257659 intergenic not near genes chr3L_4_15255001 chr3L_15255001 RAL-375 1195 chr3L 15261723 15261726 chr3L 22908066 22908066 6 7646342 7.5 25.5 16.5 0.3 7646343 chr3L 15261723 intergenic not near genes chr3L 19084894 intron Mkp3 - chr3L 22908066 intergenic not near genes chr3L_6_19080001 chr3L_19080001 RAL-375 1196 chr3L 15286723 15286755 chr3L 15286813 15286845 13 88 3.5 2.0 2.8 3.4 122 chr3L 15286723 intergenic not near genes chr3L 15286784 intergenic not near genes chr3L 15286845 intergenic not near genes chr3L_13_15285001 chr3L_15285001 RAL-375 1197 chr3L 15295769 15295778 chr3L 15298612 15298616 gypsy5 4 2841 5.5 3.0 4.2 0.8 2847 chr3L 15295769 intergenic not near genes chr3L 15297192 intergenic not near genes chr3L 15298616 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-375 1198 chr3L 15348108 15348139 chr3L 15348266 15348297 11 158 2.5 4.5 3.5 2.4 189 chr3L 15348108 intergenic not near genes chr3L 15348202 intergenic not near genes chr3L 15348297 intergenic not near genes chr3L_11_15345001 chr3L_15345001 RAL-375 1199 chr3L 15382672 15382702 chr3L 15382808 15382838 11 136 3.5 4.0 3.8 2.3 166 chr3L 15382672 intergenic not near genes chr3L 15382755 intergenic not near genes chr3L 15382838 intergenic not near genes chr3L_11_15380001 chr3L_15380001 RAL-375 1200 chr3L 15384962 15384967 chr3L 15385090 15385095 4 127 6.0 4.0 5.0 0.7 133 chr3L 15384962 intergenic not near genes chr3L 15385028 intergenic not near genes chr3L 15385095 intergenic not near genes chr3L_4_15385001 chr3L_15385001 RAL-375 1201 chr3L 15384968 15384987 chr3L 15385087 15385106 4 123 4.5 4.0 4.2 0.8 138 chr3L 15384968 intergenic not near genes chr3L 15385037 intergenic not near genes chr3L 15385106 intergenic not near genes chr3L_4_15385001 chr3L_15385001 RAL-375 1202 chr3L 15406043 15406056 chr3L 15406124 15406139 5 82 0.0 6.5 3.2 1.2 96 chr3L 15406043 intergenic not near genes chr3L 15406091 intergenic not near genes chr3L 15406139 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-375 1203 chr3L 15418038 15418071 chr3L 15418122 15418154 5 84 3.0 3.5 3.2 1.2 116 chr3L 15418038 intergenic not near genes chr3L 15418096 intergenic not near genes chr3L 15418154 intergenic not near genes chr3L_5_15415001 chr3L_15415001 RAL-375 1204 chr3L 15444651 15444683 chr3L 15444744 15444777 8 91 5.5 8.0 6.8 1.0 126 chr3L 15444651 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444777 intergenic not near genes chr3L_8_15440001 chr3L_15440001 RAL-375 1205 chr3L 15466041 15466137 chr3L 15466122 15466233 10 87 0.0 0.0 0.0 10.0 192 chr3L 15466041 intergenic not near genes chr3L 15466137 intergenic not near genes chr3L 15466233 intergenic not near genes chr3L_10_15465001 chr3L_15465001 RAL-375 1206 chr3L 15466519 15466552 chr3L 15466603 15466635 4 84 1.5 1.0 1.2 1.8 116 chr3L 15466519 intergenic not near genes chr3L 15466577 intergenic not near genes chr3L 15466635 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-375 1207 chr3L 15483065 15483070 chr3L 15483262 15483267 5 197 3.0 6.5 4.8 0.9 202 chr3L 15483065 intergenic not near genes chr3L 15483166 intergenic not near genes chr3L 15483267 intergenic not near genes chr3L_5_15480001 chr3L_15480001 RAL-375 1208 chr3L 15483074 15483083 chr3L 15483260 15483280 4 194 3.0 6.5 4.8 0.7 206 chr3L 15483074 intergenic not near genes chr3L 15483177 intergenic not near genes chr3L 15483280 intergenic not near genes chr3L_4_15480001 chr3L_15480001 RAL-375 1209 chr3L 15486941 15486968 chr3L 15487031 15487064 5 94 2.0 2.5 2.2 1.6 123 chr3L 15486941 intergenic not near genes chr3L 15487002 intergenic not near genes chr3L 15487064 intergenic not near genes chr3L_5_15485001 chr3L_15485001 RAL-375 1210 chr3L 15541615 15541651 chr3L 15541706 15541742 6 91 4.5 3.5 4.0 1.2 127 chr3L 15541615 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541742 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-375 1211 chr3L 15633184 15633213 chr3L 15633263 15633293 9 80 1.5 1.0 1.2 4.1 109 chr3L 15633184 intron comm3 - chr3L 15633238 intron comm3 - chr3L 15633293 intron comm3 - chr3L_9_15630001 chr3L_15630001 RAL-375 1212 chr3L 15666970 15666999 chr3L 15667053 15667082 10 83 2.5 6.0 4.2 1.9 112 chr3L 15666970 intergenic not near genes chr3L 15667026 intergenic not near genes chr3L 15667082 intergenic not near genes chr3L_10_15665001 chr3L_15665001 RAL-375 1213 chr3L 15691416 15691446 chr3L 15691497 15691528 4 74 1.0 1.0 1.0 2.0 112 chr3L 15691416 intron CG34451 - chr3L 15691472 intron CG34451 - chr3L 15691528 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-375 1214 chr3L 15754582 15754608 chr3L 15754665 15754690 10 82 0.5 5.0 2.8 2.6 108 chr3L 15754582 intergenic not near genes chr3L 15754636 intergenic not near genes chr3L 15754690 intergenic not near genes chr3L_10_15750001 chr3L_15750001 RAL-375 1215 chr3L 15756879 15756910 chr3L 15756962 15756993 13 83 2.5 0.5 1.5 5.2 114 chr3L 15756879 intergenic not near genes chr3L 15756936 intergenic not near genes chr3L 15756993 intergenic not near genes chr3L_13_15755001 chr3L_15755001 RAL-375 1216 chr3L 15769003 15769010 chr3L 15769114 15769121 4 111 5.0 0.0 2.5 1.1 118 chr3L 15769003 intergenic not near genes chr3L 15769062 intergenic not near genes chr3L 15769121 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-375 1217 chr3L 15833802 15833833 chr3L 15834041 15834072 19 239 29.5 27.0 28.2 0.7 270 chr3L 15833802 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833937 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834072 3` UTR CG18081 - chr3L_19_15830001 chr3L_15830001 RAL-375 1218 chr3L 15899233 15899261 chr3L 15899790 15899795 jockey 7 557 2.0 5.5 3.8 1.5 562 chr3L 15899233 intergenic pHCl - chr3L 15899514 intergenic pHCl - chr3L 15899795 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-375 1219 chr3L 15942199 15942220 chr3L 15942275 15942296 6 76 2.0 4.0 3.0 1.5 97 chr3L 15942199 intron Pka-C3 - chr3L 15942248 intron Pka-C3 - chr3L 15942296 intron Pka-C3 - chr3L_6_15940001 chr3L_15940001 RAL-375 1220 chr3L 15956271 15956287 chr3L 15956355 15956369 6 83 4.5 5.5 5.0 1.0 98 chr3L 15956271 3` UTR GXIVsPLA2 + chr3L 15956320 3` UTR GXIVsPLA2 + chr3L 15956369 3` UTR GXIVsPLA2 + chr3L_6_15955001 chr3L_15955001 RAL-375 1221 chr3L 16170264 16170278 chr3L 16170340 16170354 6 76 6.5 3.5 5.0 1.0 90 chr3L 16170264 intergenic CG33796 -,CG33795 - chr3L 16170309 intergenic CG33796 -,CG33795 - chr3L 16170354 intergenic CG33796 -,CG33795 - chr3L_6_16170001 chr3L_16170001 RAL-375 1222 chr3L 16322822 16322856 chr3L 16322912 16322946 11 89 4.0 5.0 4.5 2.0 124 chr3L 16322822 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322946 intergenic not near genes chr3L_11_16320001 chr3L_16320001 RAL-375 1223 chr3L 16333047 16333078 chr3L 16333122 16333144 10 76 4.0 6.5 5.2 1.6 97 chr3L 16333047 intergenic retinin +,CG13056 + chr3L 16333096 intergenic CG13056 +,retinin + chr3L 16333144 intergenic CG13056 +,retinin + chr3L_10_16330001 chr3L_16330001 RAL-375 1224 chr3L 16450021 16450049 chr3L 16450105 16450131 6 84 1.5 3.0 2.2 1.9 110 chr3L 16450021 intron,intron CG33158 +,dsx-c73A - chr3L 16450076 intron,intron CG33158 +,dsx-c73A - chr3L 16450131 intron,intron CG33158 +,dsx-c73A - chr3L_6_16450001 chr3L_16450001 RAL-375 1225 chr3L 16493981 16493999 chr3L 16494495 16494516 jockey 7 516 5.0 8.0 6.5 0.9 535 chr3L 16493981 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494516 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-375 1226 chr3L 16494000 16494013 chr3L 16494491 16494530 jockey 5 508 3.0 7.0 5.0 0.8 530 chr3L 16494000 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494265 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494530 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-375 1227 chr3L 16533570 16533579 chr3L 16533680 16533690 4 111 4.0 3.0 3.5 0.9 120 chr3L 16533570 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533690 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-375 1228 chr3L 16537844 16537879 chr3L 16537931 16537966 12 86 2.5 5.0 3.8 2.5 122 chr3L 16537844 intron CG43373 - chr3L 16537905 intron CG43373 - chr3L 16537966 intron CG43373 - chr3L_12_16535001 chr3L_16535001 RAL-375 1229 chr3L 16540055 16540084 chr3L 16540143 16540169 9 87 3.0 4.0 3.5 2.0 114 chr3L 16540055 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540169 intron CG43373 - chr3L_9_16540001 chr3L_16540001 RAL-375 1230 chr3L 16616510 16616535 chr3L 16621837 16621863 297 9 5327 4.0 3.5 3.8 1.9 5353 chr3L 16616510 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621863 3` UTR Abl - chr3L_9_16615001 chr3L_16615001 RAL-375 1231 chr3L 16744292 16744324 chr3L 16744368 16744394 12 73 3.5 5.5 4.5 2.2 102 chr3L 16744292 intergenic not near genes chr3L 16744343 intergenic not near genes chr3L 16744394 intergenic not near genes chr3L_12_16740001 chr3L_16740001 RAL-375 1232 chr3L 16757643 16757669 chr3L 16757733 16757759 7 89 2.0 2.5 2.2 2.2 116 chr3L 16757643 intergenic not near genes chr3L 16757701 intergenic not near genes chr3L 16757759 intergenic not near genes chr3L_7_16755001 chr3L_16755001 RAL-375 1233 chr3L 16818746 16818772 chr3L 16818822 16818848 7 76 3.0 4.5 3.8 1.5 102 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818797 intron,intron nudC +,CG13024 - chr3L 16818848 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-375 1234 chr3L 16870868 16870891 chr3L 16870958 16870982 5 91 5.0 3.0 4.0 1.0 114 chr3L 16870868 intron Lmpt + chr3L 16870925 intron Lmpt + chr3L 16870982 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-375 1235 chr3L 16873358 16873365 chr3L 16873461 16873470 4 104 5.5 2.5 4.0 0.8 112 chr3L 16873358 intron Lmpt + chr3L 16873414 intron Lmpt + chr3L 16873470 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-375 1236 chr3L 16945728 16945761 chr3L 16954881 16954890 roo 20 9150 2.0 2.5 2.2 6.2 9162 chr3L 16945728 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954890 5` UTR Nc73EF + chr3L_20_16950001 chr3L_16950001 RAL-375 1237 chr3L 16955990 16956015 chr3L 16956068 16956093 4 78 8.0 5.5 6.8 0.5 103 chr3L 16955990 intron Nc73EF + chr3L 16956042 intron Nc73EF + chr3L 16956093 intron Nc73EF + chr3L_4_16955001 chr3L_16955001 RAL-375 1238 chr3L 17026793 17026821 chr3L 17026874 17026902 9 80 4.0 3.0 3.5 2.0 109 chr3L 17026793 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026902 3` UTR Fit2 + chr3L_9_17025001 chr3L_17025001 RAL-375 1239 chr3L 17027169 17027184 chr3L 17027261 17027276 5 92 0.5 1.5 1.0 2.5 107 chr3L 17027169 intergenic Fit2 +,CG7730 + chr3L 17027222 intergenic Fit2 +,CG7730 + chr3L 17027276 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-375 1240 chr3L 17085002 17085035 chr3L 17094151 17094183 roo 10 9148 3.0 3.5 3.2 2.4 9181 chr3L 17085002 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-375 1241 chr3L 17104433 17104458 chr3L 17104531 17104556 5 97 4.0 2.5 3.2 1.2 123 chr3L 17104433 intron Rbp6 - chr3L 17104494 intron Rbp6 - chr3L 17104556 intron Rbp6 - chr3L_5_17100001 chr3L_17100001 RAL-375 1242 chr3L 17108475 17108497 chr3L 17108551 17108572 6 75 5.5 2.5 4.0 1.2 97 chr3L 17108475 intron Rbp6 - chr3L 17108524 intron Rbp6 - chr3L 17108572 intron Rbp6 - chr3L_6_17105001 chr3L_17105001 RAL-375 1243 chr3L 17108498 17108506 chr3L 17108547 17108579 4 68 3.0 2.5 2.8 1.1 81 chr3L 17108498 intron Rbp6 - chr3L 17108538 intron Rbp6 - chr3L 17108579 intron Rbp6 - chr3L_4_17105001 chr3L_17105001 RAL-375 1244 chr3L 17117106 17117130 chr3L 17117191 17117215 6 84 2.5 2.5 2.5 1.7 109 chr3L 17117106 intron Rbp6 - chr3L 17117160 intron Rbp6 - chr3L 17117215 intron Rbp6 - chr3L_6_17115001 chr3L_17115001 RAL-375 1245 chr3L 17120658 17120674 chr3L 17120734 17120750 6 76 4.5 2.5 3.5 1.3 92 chr3L 17120658 intron Rbp6 - chr3L 17120704 intron Rbp6 - chr3L 17120750 intron Rbp6 - chr3L_6_17120001 chr3L_17120001 RAL-375 1246 chr3L 17149166 17149185 chr3L 17149247 17149265 5 81 5.0 1.5 3.2 1.2 99 chr3L 17149166 intron Rbp6 - chr3L 17149216 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-375 1247 chr3L 17166619 17166639 chr3L 17166701 17166721 10 82 6.5 3.0 4.8 1.7 102 chr3L 17166619 intron Rbp6 - chr3L 17166670 intron Rbp6 - chr3L 17166721 intron Rbp6 - chr3L_10_17165001 chr3L_17165001 RAL-375 1248 chr3L 17181802 17181809 chr3L 17181881 17181888 4 79 5.5 2.5 4.0 0.8 86 chr3L 17181802 intron Rbp6 - chr3L 17181845 intron Rbp6 - chr3L 17181888 intron Rbp6 - chr3L_4_17180001 chr3L_17180001 RAL-375 1249 chr3L 17309102 17309107 chr3L 17309164 17309189 4 76 3.0 5.5 4.2 0.8 87 chr3L 17309102 intergenic not near genes chr3L 17309146 intergenic not near genes chr3L 17309189 intergenic not near genes chr3L_4_17305001 chr3L_17305001 RAL-375 1250 chr3L 17321722 17321746 chr3L 17321805 17321831 12 83 2.5 6.5 4.5 2.2 109 chr3L 17321722 intergenic not near genes chr3L 17321776 intergenic not near genes chr3L 17321831 intergenic not near genes chr3L_12_17320001 chr3L_17320001 RAL-375 1251 chr3L 17468035 17468068 chr3L 17468165 17468198 9 130 5.0 3.5 4.2 1.7 163 chr3L 17468035 intergenic not near genes chr3L 17468116 intergenic not near genes chr3L 17468198 intergenic not near genes chr3L_9_17465001 chr3L_17465001 RAL-375 1252 chr3L 17510745 17510764 chr3L 17510829 17510848 9 84 2.5 7.5 5.0 1.5 103 chr3L 17510745 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-375 1253 chr3L 17516983 17517011 chr3L 17524540 17524568 412 7 7554 2.5 4.0 3.2 1.7 7585 chr3L 17516983 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-375 1254 chr3L 17535816 17535837 chr3L 17535929 17535951 8 112 2.5 6.0 4.2 1.5 135 chr3L 17535816 intron Nedd4 + chr3L 17535884 intron Nedd4 + chr3L 17535951 intron Nedd4 + chr3L_8_17535001 chr3L_17535001 RAL-375 1255 chr3L 17580585 17580610 chr3L 17580761 17580786 9 176 4.5 3.0 3.8 1.9 201 chr3L 17580585 intron Eip74EF - chr3L 17580686 intron Eip74EF - chr3L 17580786 intron Eip74EF - chr3L_9_17580001 chr3L_17580001 RAL-375 1256 chr3L 17730849 17730877 chr3L 17738178 17738207 mdg1 5 7329 2.0 2.0 2.0 1.7 7358 chr3L 17730849 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738207 intron Ccn + chr3L_5_17730001 chr3L_17730001 RAL-375 1257 chr3L 17790456 17790627 chr3L 17790594 17790891 8 152 0.0 1.0 0.5 5.3 435 chr3L 17790456 intergenic not near genes chr3L 17790674 intergenic CG42815 - chr3L 17790891 intergenic CG42815 - chr3L_8_17790001 chr3L_17790001 RAL-375 1258 chr3L 17799568 17799585 chr3L 17799649 17799666 6 80 4.0 4.0 4.0 1.2 98 chr3L 17799568 intron NUCB1 - chr3L 17799617 intron NUCB1 - chr3L 17799666 intron NUCB1 - chr3L_6_17795001 chr3L_17795001 RAL-375 1259 chr3L 17799812 17799842 chr3L 17801599 17801629 S-element 8 1786 3.0 1.0 2.0 2.7 1817 chr3L 17799812 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801629 intron NUCB1 - chr3L_8_17800001 chr3L_17800001 RAL-375 1260 chr3L 17827283 17827317 chr3L 17827374 17827407 10 91 3.0 2.0 2.5 2.9 124 chr3L 17827283 intron Grd + chr3L 17827345 intron Grd + chr3L 17827407 intron Grd + chr3L_10_17825001 chr3L_17825001 RAL-375 1261 chr3L 17884703 17884710 chr3L 17884803 17884810 4 100 2.5 5.0 3.8 0.8 107 chr3L 17884703 intergenic CG5506 - chr3L 17884756 intergenic CG5506 - chr3L 17884810 intergenic CG5506 - chr3L_4_17880001 chr3L_17880001 RAL-375 1262 chr3L 17906585 17906606 chr3L 17906686 17906707 4 101 2.0 4.5 3.2 1.0 122 chr3L 17906585 intron Prestin - chr3L 17906646 intron Prestin - chr3L 17906707 intron Prestin - chr3L_4_17905001 chr3L_17905001 RAL-375 1263 chr3L 17968135 17968167 chr3L 17968216 17968248 5 80 6.0 7.0 6.5 0.7 113 chr3L 17968135 intron Eip75B - chr3L 17968192 intron Eip75B - chr3L 17968248 intron Eip75B - chr3L_5_17965001 chr3L_17965001 RAL-375 1264 chr3L 17991572 17991586 chr3L 17991650 17991664 5 78 4.5 7.5 6.0 0.7 92 chr3L 17991572 intron Eip75B - chr3L 17991618 intron Eip75B - chr3L 17991664 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-375 1265 chr3L 18034700 18034707 chr3L 18034764 18034790 4 77 3.5 3.5 3.5 0.9 90 chr3L 18034700 intron Eip75B - chr3L 18034745 intron Eip75B - chr3L 18034790 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-375 1266 chr3L 18047709 18047740 chr3L 18056766 18056797 roo 8 9057 2.0 5.0 3.5 1.8 9088 chr3L 18047709 intron Eip75B - chr3L 18052253 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_8_18050001 chr3L_18050001 RAL-375 1267 chr3L 18092785 18092805 chr3L 18092900 18092920 8 115 5.5 1.5 3.5 1.8 135 chr3L 18092785 intron CG13698 - chr3L 18092852 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_8_18090001 chr3L_18090001 RAL-375 1268 chr3L 18116989 18117012 chr3L 18117161 18117184 11 171 4.0 8.5 6.2 1.5 195 chr3L 18116989 3` UTR,intron CG32195 +,CG7341 + chr3L 18117086 3` UTR,intron CG32195 +,CG7341 + chr3L 18117184 3` UTR,intron CG32195 +,CG7341 + chr3L_11_18115001 chr3L_18115001 RAL-375 1269 chr3L 18138230 18138258 chr3L 18138315 18138342 8 84 3.0 3.0 3.0 2.0 112 chr3L 18138230 intergenic not near genes chr3L 18138286 intergenic not near genes chr3L 18138342 intergenic not near genes chr3L_8_18135001 chr3L_18135001 RAL-375 1270 chr3L 18198930 18198931 chr3L 24821493 24821494 4 6622563 1.0 9.0 5.0 0.7 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-375 1271 chr3L 18262471 18262487 chr3L 18262554 18262570 6 83 5.0 2.0 3.5 1.3 99 chr3L 18262471 intergenic not near genes chr3L 18262520 intergenic not near genes chr3L 18262570 intergenic not near genes chr3L_6_18260001 chr3L_18260001 RAL-375 1272 chr3L 18301351 18301367 chr3L 18301440 18301456 5 89 2.0 3.0 2.5 1.4 105 chr3L 18301351 intergenic CG13700 - chr3L 18301404 intergenic CG13700 - chr3L 18301456 intergenic CG13700 - chr3L_5_18300001 chr3L_18300001 RAL-375 1273 chr3L 18375972 18376002 chr3L 18376057 18376086 6 84 4.0 3.0 3.5 1.3 114 chr3L 18375972 intergenic not near genes chr3L 18376029 intergenic not near genes chr3L 18376086 intergenic not near genes chr3L_6_18375001 chr3L_18375001 RAL-375 1274 chr3L 18408731 18408759 chr3L 18408817 18408845 6 158 1.0 0.0 0.5 4.0 114 chr3L 18408731 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408845 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-375 1275 chr3L 9013689 9013695 chr3L 18417066 18417066 5 9403374 21.0 8.0 14.5 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-375 1276 chr3L 18436067 18436094 chr3L 18436165 18436192 7 97 2.0 0.5 1.2 3.2 125 chr3L 18436067 intergenic not near genes chr3L 18436130 intergenic not near genes chr3L 18436192 intergenic not near genes chr3L_7_18435001 chr3L_18435001 RAL-375 1277 chr3L 18445254 18445278 chr3L 18445332 18445355 5 77 0.5 0.5 0.5 3.3 101 chr3L 18445254 intergenic not near genes chr3L 18445304 intergenic not near genes chr3L 18445355 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-375 1278 chr3L 18456278 18456296 chr3L 18456365 18456384 4 88 3.0 1.0 2.0 1.3 106 chr3L 18456278 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456384 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-375 1279 chr3L 18473189 18473193 chr3L 18473466 18473469 4 280 0.5 2.5 1.5 1.6 280 chr3L 18473189 intergenic not near genes chr3L 18473329 intergenic not near genes chr3L 18473469 intergenic not near genes chr3L_4_18470001 chr3L_18470001 RAL-375 1280 chr3L 18506139 18506163 chr3L 18509596 18509621 F-element 7 3461 2.0 3.5 2.8 1.8 3482 chr3L 18506139 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509621 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-375 1281 chr3L 18528626 18528657 chr3L 18537787 18537818 roo 10 9161 1.5 1.0 1.2 4.5 9192 chr3L 18528626 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_10_18530001 chr3L_18530001 RAL-375 1282 chr3L 18582220 18582242 chr3L 18582305 18582327 10 85 5.5 5.5 5.5 1.5 107 chr3L 18582220 intergenic not near genes chr3L 18582274 intergenic not near genes chr3L 18582327 intergenic not near genes chr3L_10_18580001 chr3L_18580001 RAL-375 1283 chr3L 18593968 18593981 chr3L 18595948 18595961 Doc 4 1980 12.5 3.0 7.8 0.5 1993 chr3L 18593968 intergenic term - chr3L 18594964 intergenic not near genes chr3L 18595961 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-375 1284 chr3L 18638575 18638603 chr3L 18638669 18638697 9 93 5.0 2.5 3.8 1.9 122 chr3L 18638575 intron MYPT-75D + chr3L 18638636 intron MYPT-75D + chr3L 18638697 intron MYPT-75D + chr3L_9_18635001 chr3L_18635001 RAL-375 1285 chr3L 18701136 18701157 chr3L 18701223 18701245 4 87 3.0 4.0 3.5 0.9 109 chr3L 18701136 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701245 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-375 1286 chr3L 18736055 18736061 chr3L 18736150 18736156 5 95 5.0 4.5 4.8 0.9 101 chr3L 18736055 intergenic not near genes chr3L 18736106 intergenic not near genes chr3L 18736156 intergenic not near genes chr3L_5_18735001 chr3L_18735001 RAL-375 1287 chr3L 18739125 18739152 chr3L 18739207 18739234 9 82 5.0 4.0 4.5 1.6 109 chr3L 18739125 intergenic not near genes chr3L 18739180 intergenic not near genes chr3L 18739234 intergenic not near genes chr3L_9_18735001 chr3L_18735001 RAL-375 1288 chr3L 18753548 18753562 chr3L 18753630 18753644 6 81 1.0 2.0 1.5 2.4 96 chr3L 18753548 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753644 intron ftz-f1 - chr3L_6_18750001 chr3L_18750001 RAL-375 1289 chr3L 18770650 18770678 chr3L 18770735 18770763 10 85 4.0 4.5 4.2 1.9 113 chr3L 18770650 intron ftz-f1 - chr3L 18770706 intron ftz-f1 - chr3L 18770763 intron ftz-f1 - chr3L_10_18770001 chr3L_18770001 RAL-375 1290 chr3L 18772410 18772433 chr3L 18781091 18781114 roo 9 8681 4.5 3.0 3.8 1.9 8704 chr3L 18772410 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781114 intron ftz-f1 - chr3L_9_18775001 chr3L_18775001 RAL-375 1291 chr3L 18792571 18792593 chr3L 18792653 18792675 4 82 4.0 5.0 4.5 0.7 104 chr3L 18792571 intron ftz-f1 - chr3L 18792623 intron ftz-f1 - chr3L 18792675 intron ftz-f1 - chr3L_4_18790001 chr3L_18790001 RAL-375 1292 chr3L 18810227 18810244 chr3L 18810305 18810315 6 77 1.5 4.0 2.8 1.6 88 chr3L 18810227 intron CG14073 - chr3L 18810271 intron CG14073 - chr3L 18810315 intron CG14073 - chr3L_6_18810001 chr3L_18810001 RAL-375 1293 chr3L 18868968 18868994 chr3L 18869049 18869075 7 80 7.5 4.0 5.8 1.0 107 chr3L 18868968 3` UTR Dysb + chr3L 18869022 3` UTR Dysb + chr3L 18869075 3` UTR Dysb + chr3L_7_18865001 chr3L_18865001 RAL-375 1294 chr3L 18918015 18918029 chr3L 18918192 18918204 5 187 3.0 4.5 3.8 1.0 189 chr3L 18918015 intron CG6839 + chr3L 18918110 exon CG6839 + chr3L 18918204 exon CG6839 + chr3L_5_18915001 chr3L_18915001 RAL-375 1295 chr3L 18933092 18933127 chr3L 18933177 18933212 9 85 7.0 5.0 6.0 1.3 120 chr3L 18933092 intron CG32204 - chr3L 18933152 intron CG32204 - chr3L 18933212 intron CG32204 - chr3L_9_18930001 chr3L_18930001 RAL-375 1296 chr3L 18935849 18935860 chr3L 18935938 18935949 4 89 7.0 10.0 8.5 0.4 100 chr3L 18935849 intron CG32204 - chr3L 18935899 intron CG32204 - chr3L 18935949 intron CG32204 - chr3L_4_18935001 chr3L_18935001 RAL-375 1297 chr3L 18941174 18941191 chr3L 18941285 18941302 4 111 7.5 14.0 10.8 0.3 128 chr3L 18941174 intron CG32204 - chr3L 18941238 intron CG32204 - chr3L 18941302 intron CG32204 - chr3L_4_18940001 chr3L_18940001 RAL-375 1298 chr3L 18956791 18956822 chr3L 18957047 18957078 4 256 6.5 5.0 5.8 0.6 287 chr3L 18956791 intergenic not near genes chr3L 18956934 intergenic not near genes chr3L 18957078 intergenic not near genes chr3L_4_18955001 chr3L_18955001 RAL-375 1299 chr3L 19008838 19008872 chr3L 19009177 19009210 jockey 10 338 2.5 4.0 3.2 2.4 372 chr3L 19008838 intron nkd - chr3L 19009024 intron nkd - chr3L 19009210 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-375 1300 chr3L 19082036 19082070 chr3L 19082138 19082172 10 101 2.0 2.0 2.0 3.3 136 chr3L 19082036 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082172 intron Mkp3 - chr3L_10_19080001 chr3L_19080001 RAL-375 1301 chr3L 19101715 19101741 chr3L 19102087 19102113 11 372 1.0 3.0 2.0 3.7 398 chr3L 19101715 intergenic not near genes chr3L 19101914 intergenic not near genes chr3L 19102113 intergenic not near genes chr3L_11_19100001 chr3L_19100001 RAL-375 1302 chr3L 19115650 19115671 chr3L 19115826 19115849 BS 4 177 4.0 2.5 3.2 1.0 199 chr3L 19115650 intron CG14082 - chr3L 19115750 intron CG14082 - chr3L 19115849 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-375 1303 chr3L 19117041 19117076 chr3L 19124488 19124523 mdg1 11 7447 2.0 5.5 3.8 2.3 7482 chr3L 19117041 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-375 1304 chr3L 19182394 19182420 chr3L 19182474 19182498 12 80 0.5 2.5 1.5 4.8 104 chr3L 19182394 intron fz2 - chr3L 19182446 intron fz2 - chr3L 19182498 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-375 1305 chr3L 19202478 19202494 chr3L 19202795 19202797 4 312 8.5 9.5 9.0 0.4 319 chr3L 19202478 intron fz2 - chr3L 19202638 intron fz2 - chr3L 19202797 intron fz2 - chr3L_4_19200001 chr3L_19200001 RAL-375 1306 chr3L 19208056 19208087 chr3L 19209430 19209461 Doc 10 1372 2.5 0.5 1.5 4.0 1405 chr3L 19208056 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209461 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-375 1307 chr3L 19220637 19220637 chr3L 22908066 22908066 4 3687429 14.5 25.5 20.0 0.2 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-375 1308 chr3L 19238729 19238749 chr3L 19238832 19238856 8 106 2.5 1.0 1.8 2.9 127 chr3L 19238729 intergenic not near genes chr3L 19238792 intergenic not near genes chr3L 19238856 intergenic not near genes chr3L_8_19235001 chr3L_19235001 RAL-375 1309 chr3L 19248849 19248875 chr3L 19248939 19248965 5 90 6.5 4.5 5.5 0.8 116 chr3L 19248849 intergenic not near genes chr3L 19248907 intergenic not near genes chr3L 19248965 intergenic not near genes chr3L_5_19245001 chr3L_19245001 RAL-375 1310 chr3L 19269824 19269845 chr3L 19270025 19270049 6 201 5.5 10.5 8.0 0.7 225 chr3L 19269824 intron,exon CG14085 +,CG14088 - chr3L 19269936 intron,exon CG14085 +,CG14088 - chr3L 19270049 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-375 1311 chr3L 19295806 19295824 chr3L 19295932 19295949 5 126 4.0 2.0 3.0 1.2 143 chr3L 19295806 intron fal + chr3L 19295878 intron fal + chr3L 19295949 intron fal + chr3L_5_19295001 chr3L_19295001 RAL-375 1312 chr3L 19316254 19316283 chr3L 19316340 19316368 13 86 2.0 2.5 2.2 4.1 114 chr3L 19316254 intron pip - chr3L 19316311 intron pip - chr3L 19316368 intron pip - chr3L_13_19315001 chr3L_19315001 RAL-375 1313 chr3L 19323605 19323621 chr3L 19323767 19323783 8 162 3.5 4.0 3.8 1.7 178 chr3L 19323605 intron pip - chr3L 19323694 intron pip - chr3L 19323783 intron pip - chr3L_8_19320001 chr3L_19320001 RAL-375 1314 chr3L 19343603 19343620 chr3L 19343743 19343760 6 140 1.0 3.5 2.2 1.9 157 chr3L 19343603 exon CG32206 - chr3L 19343682 intron CG32206 - chr3L 19343760 intron CG32206 - chr3L_6_19340001 chr3L_19340001 RAL-375 1315 chr3L 19365921 19365928 chr3L 19366018 19366025 4 97 0.0 5.0 2.5 1.1 104 chr3L 19365921 intron CG32206 - chr3L 19365973 intron CG32206 - chr3L 19366025 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-375 1316 chr3L 19426750 19426781 chr3L 19426827 19426859 9 76 3.0 1.5 2.2 2.8 109 chr3L 19426750 intergenic not near genes chr3L 19426804 intergenic not near genes chr3L 19426859 intergenic not near genes chr3L_9_19425001 chr3L_19425001 RAL-375 1317 chr3L 19493906 19493926 chr3L 19494264 19494284 7 358 2.0 1.5 1.8 2.5 378 chr3L 19493906 intron CG9449 - chr3L 19494095 intron CG9449 - chr3L 19494284 intron CG9449 - chr3L_7_19490001 chr3L_19490001 RAL-375 1318 chr3L 19600339 19600343 chr3L 19601385 19601418 22 1048 26.0 43.5 34.8 0.6 1079 chr3L 19600339 exon Taf6 + chr3L 19600878 intron Taf6 + chr3L 19601418 intergenic Taf6 +,CG9368 + chr3L_22_19600001 chr3L_19600001 RAL-375 1319 chr3L 19820306 19820316 chr3L 19827855 19827864 412 4 7549 3.5 5.0 4.2 0.8 7558 chr3L 19820306 intron Deaf1 + chr3L 19824085 intron Deaf1 + chr3L 19827864 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-375 1320 chr3L 19846608 19846635 chr3L 19846706 19846733 10 98 2.0 5.5 3.8 2.1 125 chr3L 19846608 intron Papss + chr3L 19846670 intron Papss + chr3L 19846733 intron Papss + chr3L_10_19845001 chr3L_19845001 RAL-375 1321 chr3L 19848511 19848532 chr3L 19857692 19857719 roo 6 9188 4.5 3.0 3.8 1.2 9208 chr3L 19848511 intron Papss + chr3L 19853115 intron Papss + chr3L 19857719 intron Papss + chr3L_6_19850001 chr3L_19850001 RAL-375 1322 chr3L 19961284 19961304 chr3L 19961493 19961514 8 209 5.5 5.0 5.2 1.3 230 chr3L 19961284 intron Ac76E + chr3L 19961399 intron Ac76E + chr3L 19961514 intron Ac76E + chr3L_8_19960001 chr3L_19960001 RAL-375 1323 chr3L 19962952 19962978 chr3L 19963030 19963056 5 78 1.5 2.5 2.0 1.7 104 chr3L 19962952 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963056 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-375 1324 chr3L 19981205 19981217 chr3L 19981285 19981297 4 80 5.0 1.0 3.0 1.0 92 chr3L 19981205 intergenic CG17732 + chr3L 19981251 intergenic CG17732 + chr3L 19981297 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-375 1325 chr3L 20113475 20113510 chr3L 20113570 20113605 15 95 4.0 3.5 3.8 3.1 130 chr3L 20113475 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113605 intergenic not near genes chr3L_15_20110001 chr3L_20110001 RAL-375 1326 chr3L 20113657 20113691 chr3L 20122914 20122948 roo 13 9257 4.5 4.0 4.2 2.5 9291 chr3L 20113657 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122948 intergenic not near genes chr3L_13_20115001 chr3L_20115001 RAL-375 1327 chr3L 20257333 20257361 chr3L 20258453 20258481 pogo 13 1120 2.0 3.0 2.5 3.7 1148 chr3L 20257333 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258481 intron rdgC + chr3L_13_20255001 chr3L_20255001 RAL-375 1328 chr3L 20283676 20283703 chr3L 20283760 20283787 9 83 2.0 1.5 1.8 3.2 111 chr3L 20283676 intron gogo - chr3L 20283732 intron gogo - chr3L 20283787 intron gogo - chr3L_9_20280001 chr3L_20280001 RAL-375 1329 chr3L 20345610 20345637 chr3L 20345691 20345717 11 81 6.5 3.0 4.8 1.9 107 chr3L 20345610 intergenic Rbbp5 - chr3L 20345664 intergenic Rbbp5 - chr3L 20345717 intergenic Rbbp5 - chr3L_11_20345001 chr3L_20345001 RAL-375 1330 chr3L 20386937 20386963 chr3L 20387039 20387065 7 101 4.5 4.0 4.2 1.3 128 chr3L 20386937 intron fbl + chr3L 20387001 intron fbl + chr3L 20387065 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-375 1331 chr3L 20451273 20451292 chr3L 20451514 20451533 4 241 6.5 1.5 4.0 0.8 260 chr3L 20451273 intron CG5199 - chr3L 20451403 intron CG5199 - chr3L 20451533 intron CG5199 - chr3L_4_20450001 chr3L_20450001 RAL-375 1332 chr3L 20476756 20476784 chr3L 20484355 20484383 springer 5 7598 2.0 2.0 2.0 1.7 7627 chr3L 20476756 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-375 1333 chr3L 20548367 20548387 chr3L 20548456 20548467 8 88 5.0 4.0 4.5 1.5 100 chr3L 20548367 intergenic not near genes chr3L 20548417 intergenic not near genes chr3L 20548467 intergenic not near genes chr3L_8_20545001 chr3L_20545001 RAL-375 1334 chr3L 20618724 20618753 chr3L 20621754 20621783 6 3030 19.0 19.5 19.2 0.3 3059 chr3L 20618724 intron knrl - chr3L 20620254 5` UTR knrl - chr3L 20621783 intergenic not near genes chr3L_6_20620001 chr3L_20620001 RAL-375 1335 chr3L 20821272 20821310 chr3L 20824741 20824779 NOF 6 3469 3.5 2.5 3.0 1.5 3507 chr3L 20821272 intron Pka-R1 + chr3L 20823026 intron Pka-R1 + chr3L 20824779 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-375 1336 chr3L 20849272 20849299 chr3L 20849351 20849378 7 79 6.5 4.5 5.5 1.1 106 chr3L 20849272 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849378 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-375 1337 chr3L 20858070 20858102 chr3L 20858169 20858200 7 99 2.0 0.0 1.0 3.5 130 chr3L 20858070 intron CG32432 - chr3L 20858135 intron CG32432 - chr3L 20858200 intron CG32432 - chr3L_7_20855001 chr3L_20855001 RAL-375 1338 chr3L 21014919 21014945 chr3L 21023400 21023407 Tirant 4 8476 5.5 3.0 4.2 0.8 8488 chr3L 21014919 intron skd - chr3L 21019163 intron skd - chr3L 21023407 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-375 1339 chr3L 21057142 21057160 chr3L 21057358 21057376 5 214 1.0 3.0 2.0 1.7 234 chr3L 21057142 intron siz + chr3L 21057259 intron siz + chr3L 21057376 intron siz + chr3L_5_21055001 chr3L_21055001 RAL-375 1340 chr3L 21067952 21067977 chr3L 21068032 21068056 15 77 2.0 1.0 1.5 6.0 104 chr3L 21067952 intron siz + chr3L 21068004 intron siz + chr3L 21068056 intron siz + chr3L_15_21065001 chr3L_21065001 RAL-375 1341 chr3L 21082208 21082239 chr3L 21082286 21082317 14 78 2.5 4.0 3.2 3.3 109 chr3L 21082208 intron ko - chr3L 21082262 intron ko - chr3L 21082317 intron ko - chr3L_14_21080001 chr3L_21080001 RAL-375 1342 chr3L 21085580 21085601 chr3L 21085968 21085989 5 388 4.0 3.0 3.5 1.1 409 chr3L 21085580 intron ko - chr3L 21085784 intron ko - chr3L 21085989 intron ko - chr3L_5_21085001 chr3L_21085001 RAL-375 1343 chr3L 21151862 21151897 chr3L 21156946 21156981 flea 19 5083 2.5 2.5 2.5 5.4 5119 chr3L 21151862 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_19_21150001 chr3L_21150001 RAL-375 1344 chr3L 21243761 21243767 chr3L 21251323 21251330 412 4 7562 2.5 2.5 2.5 1.1 7569 chr3L 21243761 intron Eip78C + chr3L 21247546 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-375 1345 chr3L 21256533 21256564 chr3L 21256627 21256658 7 92 0.5 3.5 2.0 2.3 125 chr3L 21256533 intron Eip78C + chr3L 21256596 intron Eip78C + chr3L 21256658 intron Eip78C + chr3L_7_21255001 chr3L_21255001 RAL-375 1346 chr3L 21306149 21306179 chr3L 21315308 21315338 roo 10 9159 2.0 3.0 2.5 2.9 9189 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315338 3` UTR Pc - chr3L_10_21310001 chr3L_21310001 RAL-375 1347 chr3L 21372734 21372750 chr3L 21379242 21379257 McClintock 6 6508 0.0 4.0 2.0 2.0 6523 chr3L 21372734 intergenic not near genes chr3L 21375996 intergenic not near genes chr3L 21379257 intergenic not near genes chr3L_6_21375001 chr3L_21375001 RAL-375 1348 chr3L 4341332 4341338 chr3L 21448026 21448026 4 17106692 17.0 21.0 19.0 0.2 17106694 chr3L 4341332 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-375 1349 chr3L 4341332 4341337 chr3L 21448027 21448027 4 17106694 17.5 20.5 19.0 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-375 1350 chr3L 21467390 21467416 chr3L 21467519 21467545 13 129 21.5 19.5 20.5 0.6 155 chr3L 21467390 intergenic not near genes chr3L 21467468 intergenic not near genes chr3L 21467545 intergenic not near genes chr3L_13_21465001 chr3L_21465001 RAL-375 1351 chr3L 21498834 21498863 chr3L 21500470 21500497 1360 9 1633 5.0 6.0 5.5 1.4 1663 chr3L 21498834 intron Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500497 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-375 1352 chr3L 21648830 21648857 chr3L 21648916 21648939 7 85 3.5 4.0 3.8 1.5 109 chr3L 21648830 intron CG43980 + chr3L 21648884 intron CG43980 + chr3L 21648939 intron CG43980 + chr3L_7_21645001 chr3L_21645001 RAL-375 1353 chr3L 21749314 21749347 chr3L 21754473 21754490 Doc 5 5156 2.0 1.5 1.8 1.8 5176 chr3L 21749314 intron Syn1 - chr3L 21751902 intron Syn1 - chr3L 21754490 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-375 1354 chr3L 21769074 21769085 chr3L 21769161 21769169 4 86 1.5 4.0 2.8 1.1 95 chr3L 21769074 intron,intron Syn1 -,CG42689 + chr3L 21769122 intron,intron Syn1 -,CG42689 + chr3L 21769169 intron,intron Syn1 -,CG42689 + chr3L_4_21765001 chr3L_21765001 RAL-375 1355 chr3L 21776681 21776696 chr3L 21776768 21776782 4 86 0.0 1.0 0.5 2.7 101 chr3L 21776681 intron,intron CG42689 +,CG42552 + chr3L 21776732 intron,intron CG42689 +,CG42552 + chr3L 21776782 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-375 1356 chr3L 21852266 21852282 chr3L 21852356 21852375 4 92 4.5 3.0 3.8 0.8 109 chr3L 21852266 intron mub + chr3L 21852320 intron mub + chr3L 21852375 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-375 1357 chr3L 21903114 21903122 chr3L 21904659 21904664 4 1544 4.0 3.0 3.5 0.9 1550 chr3L 21903114 intron mub + chr3L 21903889 intron mub + chr3L 21904664 intron mub + chr3L_4_21900001 chr3L_21900001 RAL-375 1358 chr3L 21903124 21903129 chr3L 21904647 21904673 7 1539 3.5 2.0 2.8 1.8 1549 chr3L 21903124 intron mub + chr3L 21903898 intron mub + chr3L 21904673 intron mub + chr3L_7_21900001 chr3L_21900001 RAL-375 1359 chr3L 22099673 22099699 chr3L 22105859 22105883 3S18 7 6184 5.5 4.0 4.8 1.2 6210 chr3L 22099673 intergenic not near genes chr3L 22102778 intergenic not near genes chr3L 22105883 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-375 1360 chr3L 22114785 22114818 chr3L 22114863 22114896 10 78 0.0 3.5 1.8 3.6 111 chr3L 22114785 intergenic not near genes chr3L 22114840 intergenic not near genes chr3L 22114896 intergenic not near genes chr3L_10_22110001 chr3L_22110001 RAL-375 1361 chr3L 22137520 22137554 chr3L 22137597 22137630 10 76 3.0 1.5 2.2 3.1 110 chr3L 22137520 intron olf413 + chr3L 22137575 intron olf413 + chr3L 22137630 intron olf413 + chr3L_10_22135001 chr3L_22135001 RAL-375 1362 chr3L 22223443 22223468 chr3L 22223602 22223629 8 160 2.5 3.5 3.0 2.0 186 chr3L 22223443 intron olf413 + chr3L 22223536 intron olf413 + chr3L 22223629 intron olf413 + chr3L_8_22220001 chr3L_22220001 RAL-375 1363 chr3L 22379934 22379968 chr3L 22380033 22380056 9 97 2.0 4.5 3.2 2.1 122 chr3L 22379934 intron Ten-m - chr3L 22379995 intron Ten-m - chr3L 22380056 intron Ten-m - chr3L_9_22375001 chr3L_22375001 RAL-375 1364 chr3L 22413883 22413896 chr3L 22413967 22413980 6 84 2.5 8.5 5.5 0.9 97 chr3L 22413883 intergenic not near genes chr3L 22413932 intergenic not near genes chr3L 22413980 intergenic not near genes chr3L_6_22410001 chr3L_22410001 RAL-375 1365 chr3L 22577626 22577652 chr3L 22582414 22582440 Doc 8 4788 1.5 7.0 4.2 1.5 4814 chr3L 22577626 intergenic not near genes chr3L 22580033 intergenic not near genes chr3L 22582440 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-375 1366 chr3L 22617189 22617218 chr3L 22624640 22624668 blood 15 7451 5.0 3.5 4.2 2.9 7479 chr3L 22617189 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624668 intron CG14459 - chr3L_15_22620001 chr3L_22620001 RAL-375 1367 chr3L 22678075 22678109 chr3L 22678168 22678202 7 87 1.5 3.0 2.2 2.2 127 chr3L 22678075 intron CG14457 + chr3L 22678138 intron CG14457 + chr3L 22678202 intron CG14457 + chr3L_7_22675001 chr3L_22675001 RAL-375 1368 chr3L 22734309 22734336 chr3L 22734397 22734422 12 85 2.5 4.0 3.2 2.9 113 chr3L 22734309 intron CG11241 - chr3L 22734366 intron CG11241 - chr3L 22734422 intron CG11241 - chr3L_12_22730001 chr3L_22730001 RAL-375 1369 chr3L 22761385 22761416 chr3L 22766819 22766850 Ivk 14 5434 5.5 3.0 4.2 2.7 5465 chr3L 22761385 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766850 intron SPoCk + chr3L_14_22760001 chr3L_22760001 RAL-375 1370 chr3L 22853701 22853724 chr3L 22853786 22853810 4 86 3.0 6.0 4.5 0.7 109 chr3L 22853701 5` UTR CR43426 + chr3L 22853756 5` UTR CR43426 + chr3L 22853810 5` UTR CR43426 + chr3L_4_22850001 chr3L_22850001 RAL-375 1371 chr3L 22865980 22866011 chr3L 22867113 22867144 Doc 11 1133 2.0 4.5 3.2 2.6 1164 chr3L 22865980 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_11_22865001 chr3L_22865001 RAL-375 1372 chr3L 22897200 22897226 chr3L 22897279 22897309 15 79 3.0 3.0 3.0 3.8 109 chr3L 22897200 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_15_22895001 chr3L_22895001 RAL-375 1373 chr3L 19220633 19220637 chr3L 22908066 22908066 8 3687431 14.5 25.5 20.0 0.4 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-375 1374 chr3L 22989874 22989895 chr3L 22996847 22996869 297 6 6972 3.0 4.5 3.8 1.2 6995 chr3L 22989874 intergenic not near genes chr3L 22993372 intergenic not near genes chr3L 22996869 intergenic not near genes chr3L_6_22990001 chr3L_22990001 RAL-375 1375 chr3L 23042228 23042259 chr3L 23048981 23049004 gypsy6 13 6751 3.0 3.5 3.2 3.1 6776 chr3L 23042228 intergenic not near genes chr3L 23045616 intergenic not near genes chr3L 23049004 intergenic not near genes chr3L_13_23045001 chr3L_23045001 RAL-375 1376 chr3L 23126025 23126053 chr3L 23126123 23126151 10 97 2.5 3.0 2.8 2.6 126 chr3L 23126025 5` UTR CG33217 + chr3L 23126088 5` UTR CG33217 + chr3L 23126151 intron CG33217 + chr3L_10_23125001 chr3L_23125001 RAL-375 1377 chr3L 23182269 23182295 chr3L 23182381 23182404 9 113 6.5 4.0 5.2 1.5 135 chr3L 23182269 intron CG34031 + chr3L 23182336 intron CG34031 + chr3L 23182404 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-375 1378 chr3L 23875543 23875554 chr3L 23875606 23875635 4 76 4.5 4.0 4.2 0.8 92 chr3L 23875543 intron CG40470 - chr3L 23875589 intron CG40470 - chr3L 23875635 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-375 1379 chr3L 24012413 24012435 chr3L 24020754 24020776 roo 7 8341 2.0 1.5 1.8 2.5 8363 chr3L 24012413 intergenic not near genes chr3L 24016594 intergenic not near genes chr3L 24020776 intergenic not near genes chr3L_7_24015001 chr3L_24015001 RAL-375 1380 chr3L 24168636 24168654 chr3L 24176389 24176415 ZAM 9 7758 3.0 5.5 4.2 1.7 7779 chr3L 24168636 intron Snap25 + chr3L 24172526 intron Snap25 + chr3L 24176415 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-375 1381 chr3L 10736001 10736004 chr3L 24766919 24766921 4 14030918 4.5 5.5 5.0 0.7 14030920 chr3L 10736001 intergenic not near genes chr3L 17751461 intergenic Adgf-A - chr3L 24766921 intron scro + chr3L_4_17750001 chr3L_17750001 RAL-375 1382 chr3L 24791896 24791924 chr3L 24796674 24796703 Doc 6 4779 3.5 2.0 2.8 1.6 4807 chr3L 24791896 intergenic not near genes chr3L 24794300 intergenic not near genes chr3L 24796703 intergenic not near genes chr3L_6_24790001 chr3L_24790001 RAL-375 1383 chr3L 18198930 18198931 chr3L 24821492 24821493 5 6622562 1.0 9.0 5.0 0.8 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-375 1384 chr3L 25635713 25635746 chr3L 25635985 25636018 7 271 2.5 3.0 2.8 1.8 305 chr3L 25635713 intron CG41343 - chr3L 25635866 intron CG41343 - chr3L 25636018 intron CG41343 - chr3L_7_25635001 chr3L_25635001 RAL-375 1385 chr3L 23289005 23289021 chr3L 25843686 25843702 7 2554682 21.5 23.0 22.2 0.3 2554697 chr3L 23289005 intergenic not near genes chr3L 24566354 intergenic not near genes chr3L 25843702 intron CG40178 - chr3L_7_24565001 chr3L_24565001 RAL-375 1386 chr3L 26008770 26008798 chr3L 26008917 26008945 8 146 3.5 2.0 2.8 2.1 175 chr3L 26008770 intron CG40178 - chr3L 26008858 intron CG40178 - chr3L 26008945 intron CG40178 - chr3L_8_26005001 chr3L_26005001 RAL-375 1387 chr3L 26717671 26717694 chr3L 26717747 26717770 4 76 2.5 5.0 3.8 0.8 99 chr3L 26717671 intergenic not near genes chr3L 26717720 intergenic not near genes chr3L 26717770 intergenic not near genes chr3L_4_26715001 chr3L_26715001 RAL-375 1388 chr3R 2446795 2446815 chr3R 2449044 2449065 1360 6 2249 29.5 37.0 33.2 0.2 2270 chr3R 2446795 intergenic not near genes chr3R 2447930 intergenic not near genes chr3R 2449065 intergenic not near genes chr3R_6_2445001 chr3R_2445001 RAL-375 1389 chr3R 2534141 2534163 chr3R 2541701 2541732 7 7560 8.5 20.0 14.2 0.5 7591 chr3R 2534141 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-375 1390 chr3R 2556881 2556905 chr3R 2557614 2557638 4 733 16.0 14.5 15.2 0.2 757 chr3R 2556881 intron CG41056 - chr3R 2557260 intron CG41056 - chr3R 2557638 intron CG41056 - chr3R_4_2555001 chr3R_2555001 RAL-375 1391 chr3R 3178703 3178715 chr3R 3595185 3595199 4 416484 8.0 13.5 10.8 0.3 416496 chr3R 3178703 intron CG42617 - chr3R 3386951 intergenic not near genes chr3R 3595199 intergenic not near genes chr3R_4_3385001 chr3R_3385001 RAL-375 1392 chr3R 4063812 4063837 chr3R 4069089 4069094 9 5274 3.0 14.0 8.5 0.9 5282 chr3R 4063812 intergenic not near genes chr3R 4066453 intergenic not near genes chr3R 4069094 intergenic not near genes chr3R_9_4065001 chr3R_4065001 RAL-375 1393 chr3R 4161559 4161568 chr3R 4161634 4161644 6 76 1.5 3.5 2.5 1.7 85 chr3R 4161559 3` UTR CG40198 - chr3R 4161602 exon CG40198 - chr3R 4161644 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-375 1394 chr3R 4206073 4206104 chr3R 4211648 4211679 mdg3 11 5574 2.5 4.5 3.5 2.4 5606 chr3R 4206073 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_11_4205001 chr3R_4205001 RAL-375 1395 chr3R 4366756 4366790 chr3R 4375139 4375173 roo 5 8383 5.5 7.0 6.2 0.7 8417 chr3R 4366756 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375173 5` UTR CR44922 + chr3R_5_4370001 chr3R_4370001 RAL-375 1396 chr3R 4408410 4408438 chr3R 4412714 4412742 Juan 6 4304 4.5 5.5 5.0 1.0 4332 chr3R 4408410 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412742 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-375 1397 chr3R 4609553 4609582 chr3R 4610716 4610741 1360 13 1162 3.5 3.5 3.5 2.9 1188 chr3R 4609553 intergenic not near genes chr3R 4610147 intergenic not near genes chr3R 4610741 intergenic not near genes chr3R_13_4610001 chr3R_4610001 RAL-375 1398 chr3R 4680708 4680740 chr3R 4680787 4680819 10 79 4.5 0.5 2.5 2.9 111 chr3R 4680708 intron CG43427 + chr3R 4680764 intron CG43427 + chr3R 4680819 5` UTR CG43427 + chr3R_10_4680001 chr3R_4680001 RAL-375 1399 chr3R 4753239 4753266 chr3R 4757542 4757569 F-element 17 4301 5.5 4.0 4.8 2.9 4330 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_17_4755001 chr3R_4755001 RAL-375 1400 chr3R 4769158 4769191 chr3R 4769236 4769269 11 77 4.0 1.5 2.8 2.9 111 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-375 1401 chr3R 4861568 4861596 chr3R 4861649 4861677 7 77 3.0 5.5 4.2 1.3 109 chr3R 4861568 intron opa + chr3R 4861622 intron opa + chr3R 4861677 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-375 1402 chr3R 4887478 4887510 chr3R 4894855 4894887 rover 4 7377 1.0 4.5 2.8 1.1 7409 chr3R 4887478 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-375 1403 chr3R 4896298 4896324 chr3R 4896391 4896417 7 92 3.0 3.5 3.2 1.7 119 chr3R 4896298 intergenic CR45580 + chr3R 4896358 intergenic CR45580 + chr3R 4896417 5` UTR CR45580 + chr3R_7_4895001 chr3R_4895001 RAL-375 1404 chr3R 4948380 4948392 chr3R 4949001 4949013 6 621 11.0 7.0 9.0 0.6 633 chr3R 4948380 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949013 3` UTR UbcD6 - chr3R_6_4945001 chr3R_4945001 RAL-375 1405 chr3R 4966010 4966036 chr3R 4966102 4966128 11 91 3.5 6.5 5.0 1.8 118 chr3R 4966010 intron CG1124 + chr3R 4966069 intron CG1124 + chr3R 4966128 intron CG1124 + chr3R_11_4965001 chr3R_4965001 RAL-375 1406 chr3R 5045845 5045872 chr3R 5052947 5052974 HMS-Beagle 11 7102 4.0 2.0 3.0 2.8 7129 chr3R 5045845 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052974 intergenic CR45588 - chr3R_11_5045001 chr3R_5045001 RAL-375 1407 chr3R 5067981 5068012 chr3R 5073498 5073529 mdg3 16 5517 3.5 2.5 3.0 4.0 5548 chr3R 5067981 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_16_5070001 chr3R_5070001 RAL-375 1408 chr3R 5193904 5193929 chr3R 5194017 5194018 6 112 4.5 4.5 4.5 1.1 114 chr3R 5193904 intron cno - chr3R 5193961 intron cno - chr3R 5194018 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-375 1409 chr3R 5278087 5278123 chr3R 5278168 5278203 17 78 2.0 3.5 2.8 4.5 116 chr3R 5278087 intron mtd - chr3R 5278145 intron mtd - chr3R 5278203 intron mtd - chr3R_17_5275001 chr3R_5275001 RAL-375 1410 chr3R 5338397 5338425 chr3R 5343574 5343602 Rt1c 15 5177 6.0 9.5 7.8 1.7 5205 chr3R 5338397 intron mtd - chr3R 5341000 intron mtd - chr3R 5343602 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-375 1411 chr3R 5385980 5386003 chr3R 5386148 5386174 7 171 1.5 5.5 3.5 1.6 194 chr3R 5385980 intron kkv - chr3R 5386077 intron kkv - chr3R 5386174 intron kkv - chr3R_7_5385001 chr3R_5385001 RAL-375 1412 chr3R 5445959 5445992 chr3R 5452419 5452452 Burdock 11 6460 1.5 2.0 1.8 3.9 6493 chr3R 5445959 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_11_5445001 chr3R_5445001 RAL-375 1413 chr3R 5680792 5680810 chr3R 5680869 5680894 9 83 5.5 5.0 5.2 1.5 102 chr3R 5680792 3` UTR Rab23 - chr3R 5680843 3` UTR Rab23 - chr3R 5680894 3` UTR Rab23 - chr3R_9_5680001 chr3R_5680001 RAL-375 1414 chr3R 5688785 5688814 chr3R 5688906 5688935 15 120 2.0 4.0 3.0 3.8 150 chr3R 5688785 intron plx + chr3R 5688860 intron plx + chr3R 5688935 intron plx + chr3R_15_5685001 chr3R_5685001 RAL-375 1415 chr3R 5746017 5746045 chr3R 5746258 5746286 pogo 12 241 2.0 6.0 4.0 2.4 269 chr3R 5746017 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_12_5745001 chr3R_5745001 RAL-375 1416 chr3R 5747012 5747045 chr3R 5753203 5753236 diver 9 6191 1.0 2.5 1.8 3.2 6224 chr3R 5747012 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_9_5750001 chr3R_5750001 RAL-375 1417 chr3R 5809113 5809143 chr3R 5809363 5809393 pogo 5 250 2.5 3.5 3.0 1.2 280 chr3R 5809113 3` UTR CG11000 + chr3R 5809253 3` UTR CG11000 + chr3R 5809393 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-375 1418 chr3R 5822383 5822409 chr3R 5823550 5823576 1360 11 1167 2.5 2.5 2.5 3.1 1193 chr3R 5822383 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_11_5820001 chr3R_5820001 RAL-375 1419 chr3R 5927570 5927587 chr3R 5927799 5927825 pogo 9 236 1.5 3.5 2.5 2.6 255 chr3R 5927570 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927825 intron CG34113 - chr3R_9_5925001 chr3R_5925001 RAL-375 1420 chr3R 5989345 5989368 chr3R 5989428 5989451 7 83 1.0 3.0 2.0 2.3 106 chr3R 5989345 5` UTR CR44927 + chr3R 5989398 5` UTR CR44927 + chr3R 5989451 5` UTR CR44927 + chr3R_7_5985001 chr3R_5985001 RAL-375 1421 chr3R 6015977 6015991 chr3R 6024451 6024472 Tirant 5 8478 1.5 7.0 4.2 1.0 8495 chr3R 6015977 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-375 1422 chr3R 6117410 6117439 chr3R 6117531 6117551 5 119 1.5 5.5 3.5 1.1 141 chr3R 6117410 intergenic not near genes chr3R 6117480 intergenic not near genes chr3R 6117551 intergenic not near genes chr3R_5_6115001 chr3R_6115001 RAL-375 1423 chr3R 6121166 6121187 chr3R 6121384 6121405 BS 6 218 0.0 7.5 3.8 1.2 239 chr3R 6121166 intergenic not near genes chr3R 6121286 intergenic not near genes chr3R 6121405 intergenic not near genes chr3R_6_6120001 chr3R_6120001 RAL-375 1424 chr3R 6158534 6158541 chr3R 6167092 6167102 Tirant 4 8566 2.5 2.0 2.2 1.2 8568 chr3R 6158534 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167102 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-375 1425 chr3R 6206282 6206318 chr3R 6206499 6206535 BS 15 215 6.5 4.5 5.5 2.3 253 chr3R 6206282 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_15_6205001 chr3R_6205001 RAL-375 1426 chr3R 6241337 6241365 chr3R 6241411 6241440 4 76 0.0 1.0 0.5 2.7 103 chr3R 6241337 intergenic not near genes chr3R 6241388 intergenic not near genes chr3R 6241440 intergenic not near genes chr3R_4_6240001 chr3R_6240001 RAL-375 1427 chr3R 6461576 6461613 chr3R 6461657 6461693 6 80 1.0 2.5 1.8 2.1 117 chr3R 6461576 intergenic not near genes chr3R 6461634 intergenic not near genes chr3R 6461693 intergenic not near genes chr3R_6_6460001 chr3R_6460001 RAL-375 1428 chr3R 6510024 6510053 chr3R 6515105 6515134 jockey 10 5081 3.5 1.5 2.5 2.9 5110 chr3R 6510024 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515134 intergenic not near genes chr3R_10_6510001 chr3R_6510001 RAL-375 1429 chr3R 6519116 6519120 chr3R 6519224 6519228 4 108 5.0 1.5 3.2 1.0 112 chr3R 6519116 intergenic not near genes chr3R 6519172 intergenic not near genes chr3R 6519228 intergenic not near genes chr3R_4_6515001 chr3R_6515001 RAL-375 1430 chr3R 6538209 6538229 chr3R 6538304 6538323 9 97 3.5 3.5 3.5 2.0 114 chr3R 6538209 intron dpr11 - chr3R 6538266 intron dpr11 - chr3R 6538323 exon dpr11 - chr3R_9_6535001 chr3R_6535001 RAL-375 1431 chr3R 6550328 6550348 chr3R 6550409 6550429 6 80 4.0 4.5 4.2 1.2 101 chr3R 6550328 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550429 intron dpr11 - chr3R_6_6550001 chr3R_6550001 RAL-375 1432 chr3R 6551109 6551138 chr3R 6551202 6551232 15 93 3.0 4.0 3.5 3.3 123 chr3R 6551109 intron dpr11 - chr3R 6551170 intron dpr11 - chr3R 6551232 intron dpr11 - chr3R_15_6550001 chr3R_6550001 RAL-375 1433 chr3R 6561947 6561981 chr3R 6562031 6562065 9 84 3.0 2.5 2.8 2.4 118 chr3R 6561947 intron dpr11 - chr3R 6562006 intron dpr11 - chr3R 6562065 intron dpr11 - chr3R_9_6560001 chr3R_6560001 RAL-375 1434 chr3R 6639910 6639931 chr3R 6639988 6640007 7 77 7.0 0.0 3.5 1.6 97 chr3R 6639910 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640007 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-375 1435 chr3R 6698001 6698038 chr3R 6698080 6698117 5 79 3.0 2.5 2.8 1.3 116 chr3R 6698001 intergenic not near genes chr3R 6698059 intergenic not near genes chr3R 6698117 intergenic not near genes chr3R_5_6695001 chr3R_6695001 RAL-375 1436 chr3R 6780454 6780482 chr3R 6780537 6780565 4 83 2.5 4.0 3.2 1.0 111 chr3R 6780454 intergenic not near genes chr3R 6780510 intergenic not near genes chr3R 6780565 intergenic not near genes chr3R_4_6780001 chr3R_6780001 RAL-375 1437 chr3R 6782437 6782465 chr3R 6782516 6782544 9 79 4.5 5.0 4.8 1.6 107 chr3R 6782437 intergenic not near genes chr3R 6782490 intergenic not near genes chr3R 6782544 intergenic not near genes chr3R_9_6780001 chr3R_6780001 RAL-375 1438 chr3R 6807262 6807295 chr3R 6807342 6807377 5 82 3.0 1.5 2.2 1.6 115 chr3R 6807262 intergenic not near genes chr3R 6807320 intergenic not near genes chr3R 6807377 intergenic not near genes chr3R_5_6805001 chr3R_6805001 RAL-375 1439 chr3R 6828026 6828039 chr3R 6828102 6828115 5 76 1.5 3.0 2.2 1.6 89 chr3R 6828026 intron Scr - chr3R 6828070 intron Scr - chr3R 6828115 intron Scr - chr3R_5_6825001 chr3R_6825001 RAL-375 1440 chr3R 6856387 6856399 chr3R 6856504 6856514 5 117 1.5 1.0 1.2 2.3 127 chr3R 6856387 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856514 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-375 1441 chr3R 6862224 6862253 chr3R 6862311 6862339 8 86 1.0 3.0 2.0 2.7 115 chr3R 6862224 intergenic not near genes chr3R 6862282 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-375 1442 chr3R 6912110 6912129 chr3R 6912221 6912240 7 111 3.0 0.0 1.5 2.8 130 chr3R 6912110 intron Antp - chr3R 6912175 intron Antp - chr3R 6912240 intron Antp - chr3R_7_6910001 chr3R_6910001 RAL-375 1443 chr3R 6923582 6923617 chr3R 6923668 6923702 10 86 2.0 2.0 2.0 3.3 120 chr3R 6923582 intron Antp - chr3R 6923642 intron Antp - chr3R 6923702 intron Antp - chr3R_10_6920001 chr3R_6920001 RAL-375 1444 chr3R 7012211 7012232 chr3R 7012282 7012310 8 76 1.5 2.0 1.8 2.9 99 chr3R 7012211 intergenic not near genes chr3R 7012260 intergenic not near genes chr3R 7012310 intergenic not near genes chr3R_8_7010001 chr3R_7010001 RAL-375 1445 chr3R 7103289 7103319 chr3R 7103365 7103395 8 73 3.0 5.0 4.0 1.6 106 chr3R 7103289 intron Alh - chr3R 7103342 intron Alh - chr3R 7103395 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-375 1446 chr3R 7126506 7126534 chr3R 7126601 7126629 9 95 1.5 0.5 1.0 4.5 123 chr3R 7126506 3` UTR CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126629 3` UTR CG10068 - chr3R_9_7125001 chr3R_7125001 RAL-375 1447 chr3R 7173680 7173709 chr3R 7173760 7173789 5 80 4.5 5.0 4.8 0.9 109 chr3R 7173680 intron sas + chr3R 7173734 intron sas + chr3R 7173789 intron sas + chr3R_5_7170001 chr3R_7170001 RAL-375 1448 chr3R 7217471 7217489 chr3R 7217692 7217710 4 221 2.0 6.5 4.2 0.8 239 chr3R 7217471 intergenic CG14605 -,CG14606 - chr3R 7217590 intergenic CG14605 - chr3R 7217710 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-375 1449 chr3R 7332143 7332177 chr3R 7332220 7332254 11 77 3.5 0.5 2.0 3.7 111 chr3R 7332143 intergenic CR44337 + chr3R 7332198 intergenic CR44337 + chr3R 7332254 intergenic CR44337 + chr3R_11_7330001 chr3R_7330001 RAL-375 1450 chr3R 7574641 7574649 chr3R 7574723 7574730 5 81 1.5 3.5 2.5 1.4 89 chr3R 7574641 intron CG34127 - chr3R 7574686 intron CG34127 - chr3R 7574730 intron CG34127 - chr3R_5_7570001 chr3R_7570001 RAL-375 1451 chr3R 7621530 7621550 chr3R 7621621 7621640 6 90 3.0 2.5 2.8 1.6 110 chr3R 7621530 intron CG34127 - chr3R 7621585 intron CG34127 - chr3R 7621640 intron CG34127 - chr3R_6_7620001 chr3R_7620001 RAL-375 1452 chr3R 7641075 7641096 chr3R 7642624 7642660 hobo 5 1561 2.0 1.0 1.5 2.0 1585 chr3R 7641075 intergenic not near genes chr3R 7641868 intergenic not near genes chr3R 7642660 intergenic not near genes chr3R_5_7640001 chr3R_7640001 RAL-375 1453 chr3R 7688753 7688779 chr3R 7689108 7689134 7 354 3.0 2.0 2.5 2.0 381 chr3R 7688753 intron Nlg1 + chr3R 7688944 intron Nlg1 + chr3R 7689134 intron Nlg1 + chr3R_7_7685001 chr3R_7685001 RAL-375 1454 chr3R 7729466 7729499 chr3R 7737404 7737437 Stalker2 11 7937 3.0 3.5 3.2 2.6 7971 chr3R 7729466 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-375 1455 chr3R 7740878 7740895 chr3R 7740962 7740979 6 84 4.5 3.0 3.8 1.2 101 chr3R 7740878 intergenic CR44935 + chr3R 7740928 intergenic CR44935 + chr3R 7740979 intergenic CR44935 + chr3R_6_7740001 chr3R_7740001 RAL-375 1456 chr3R 7760258 7760268 chr3R 7760767 7760776 4 509 4.0 5.5 4.8 0.7 518 chr3R 7760258 intron Sp7 + chr3R 7760517 intron Sp7 + chr3R 7760776 5` UTR Sp7 + chr3R_4_7760001 chr3R_7760001 RAL-375 1457 chr3R 7760271 7760285 chr3R 7760765 7760793 4 505 2.5 5.0 3.8 0.8 522 chr3R 7760271 intron Sp7 + chr3R 7760532 intron Sp7 + chr3R 7760793 5` UTR Sp7 + chr3R_4_7760001 chr3R_7760001 RAL-375 1458 chr3R 7775912 7775944 chr3R 7775993 7776023 7 79 2.5 4.5 3.5 1.6 111 chr3R 7775912 intergenic not near genes chr3R 7775968 intergenic not near genes chr3R 7776023 intergenic not near genes chr3R_7_7775001 chr3R_7775001 RAL-375 1459 chr3R 7948447 7948462 chr3R 7948523 7948534 5 76 2.5 1.0 1.8 1.8 87 chr3R 7948447 intron dsx - chr3R 7948490 intron dsx - chr3R 7948534 intron dsx - chr3R_5_7945001 chr3R_7945001 RAL-375 1460 chr3R 7955937 7955966 chr3R 7956012 7956033 12 76 3.5 1.0 2.2 3.8 96 chr3R 7955937 intron dsx - chr3R 7955985 intron dsx - chr3R 7956033 intron dsx - chr3R_12_7955001 chr3R_7955001 RAL-375 1461 chr3R 7973315 7973341 chr3R 7974377 7974403 1360 7 1062 2.0 2.5 2.2 2.2 1088 chr3R 7973315 intergenic not near genes chr3R 7973859 intergenic not near genes chr3R 7974403 intergenic CD98hc - chr3R_7_7970001 chr3R_7970001 RAL-375 1462 chr3R 8076034 8076061 chr3R 8076215 8076225 13 178 3.5 3.0 3.2 3.1 191 chr3R 8076034 intron mAChR-B + chr3R 8076130 intron mAChR-B + chr3R 8076225 intron mAChR-B + chr3R_13_8075001 chr3R_8075001 RAL-375 1463 chr3R 8090272 8090298 chr3R 8090449 8090472 10 176 3.5 1.5 2.5 2.9 200 chr3R 8090272 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090472 intergenic CR44330 + chr3R_10_8090001 chr3R_8090001 RAL-375 1464 chr3R 8101762 8101790 chr3R 8104846 8104874 G2 5 3084 4.0 2.5 3.2 1.2 3112 chr3R 8101762 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-375 1465 chr3R 8107385 8107421 chr3R 8107519 8107555 12 134 2.0 3.0 2.5 3.4 170 chr3R 8107385 intron puc + chr3R 8107470 intron puc + chr3R 8107555 intron puc + chr3R_12_8105001 chr3R_8105001 RAL-375 1466 chr3R 8163871 8163898 chr3R 8163950 8163955 10 76 2.5 3.5 3.0 2.5 84 chr3R 8163871 intron grn - chr3R 8163913 intron grn - chr3R 8163955 intron grn - chr3R_10_8160001 chr3R_8160001 RAL-375 1467 chr3R 8182651 8182685 chr3R 8182745 8182779 10 91 3.5 4.0 3.8 2.1 128 chr3R 8182651 intergenic not near genes chr3R 8182715 intergenic not near genes chr3R 8182779 intergenic not near genes chr3R_10_8180001 chr3R_8180001 RAL-375 1468 chr3R 8207557 8207579 chr3R 8208402 8208422 F-element 4 844 3.5 5.0 4.2 0.8 865 chr3R 8207557 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-375 1469 chr3R 8230878 8230908 chr3R 8231348 8231350 5 463 0.5 1.5 1.0 2.5 472 chr3R 8230878 3` UTR CR45551 - chr3R 8231114 3` UTR CR45551 - chr3R 8231350 3` UTR CR45551 - chr3R_5_8230001 chr3R_8230001 RAL-375 1470 chr3R 8339241 8339242 chr3R 21907535 21907536 4 13568294 21.0 21.5 21.2 0.2 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-375 1471 chr3R 8339246 8339247 chr3R 21907534 21907536 23 13568289 21.5 20.0 20.8 1.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_23_15120001 chr3R_15120001 RAL-375 1472 chr3R 8403008 8403039 chr3R 8412174 8412195 roo 11 9165 8.0 4.0 6.0 1.6 9187 chr3R 8403008 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412195 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-375 1473 chr3R 8431149 8431180 chr3R 8431232 8431267 9 84 3.5 2.0 2.8 2.4 118 chr3R 8431149 intron CG45263 - chr3R 8431208 intron CG45263 - chr3R 8431267 intron CG45263 - chr3R_9_8430001 chr3R_8430001 RAL-375 1474 chr3R 8541339 8541369 chr3R 8541419 8541447 18 80 5.0 4.5 4.8 3.1 108 chr3R 8541339 intergenic not near genes chr3R 8541393 intergenic not near genes chr3R 8541447 intergenic not near genes chr3R_18_8540001 chr3R_8540001 RAL-375 1475 chr3R 8570476 8570495 chr3R 8575112 8575131 HMS-Beagle 4 4636 1.5 2.5 2.0 1.3 4655 chr3R 8570476 intergenic not near genes chr3R 8572804 intergenic not near genes chr3R 8575131 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-375 1476 chr3R 8601781 8601796 chr3R 8610917 8610949 roo 6 9149 2.0 0.5 1.2 2.7 9168 chr3R 8601781 intron 5-HT2B + chr3R 8606365 intron 5-HT2B + chr3R 8610949 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-375 1477 chr3R 8614791 8614814 chr3R 8614994 8615017 8 201 0.5 2.5 1.5 3.2 226 chr3R 8614791 intron 5-HT2B + chr3R 8614904 intron 5-HT2B + chr3R 8615017 intron 5-HT2B + chr3R_8_8610001 chr3R_8610001 RAL-375 1478 chr3R 8642416 8642441 chr3R 8642492 8642518 8 74 2.0 1.0 1.5 3.2 102 chr3R 8642416 intergenic not near genes chr3R 8642467 intergenic not near genes chr3R 8642518 intergenic not near genes chr3R_8_8640001 chr3R_8640001 RAL-375 1479 chr3R 8707357 8707391 chr3R 8709798 8709827 jockey 11 2440 4.0 4.0 4.0 2.2 2470 chr3R 8707357 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-375 1480 chr3R 8745747 8745777 chr3R 8745858 8745888 7 111 7.0 5.0 6.0 1.0 141 chr3R 8745747 intron CG9801 - chr3R 8745818 intron CG9801 - chr3R 8745888 intron CG9801 - chr3R_7_8745001 chr3R_8745001 RAL-375 1481 chr3R 8843515 8843534 chr3R 8843722 8843746 6 211 3.5 7.0 5.2 1.0 231 chr3R 8843515 intron pyd - chr3R 8843630 intron pyd - chr3R 8843746 intron pyd - chr3R_6_8840001 chr3R_8840001 RAL-375 1482 chr3R 8894876 8894905 chr3R 8896032 8896060 1360 10 1156 3.0 4.5 3.8 2.1 1184 chr3R 8894876 intron pyd - chr3R 8895468 intron pyd - chr3R 8896060 intron pyd - chr3R_10_8895001 chr3R_8895001 RAL-375 1483 chr3R 9082050 9082068 chr3R 9082140 9082162 4 92 2.0 5.0 3.5 0.9 112 chr3R 9082050 intron pum - chr3R 9082106 intron pum - chr3R 9082162 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-375 1484 chr3R 9095290 9095318 chr3R 9095376 9095405 13 87 2.5 1.5 2.0 4.3 115 chr3R 9095290 intron pum - chr3R 9095348 intron pum - chr3R 9095405 intron pum - chr3R_13_9095001 chr3R_9095001 RAL-375 1485 chr3R 9108875 9108883 chr3R 9108951 9108959 4 75 4.5 3.5 4.0 0.8 84 chr3R 9108875 intron pum - chr3R 9108917 intron pum - chr3R 9108959 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-375 1486 chr3R 9141160 9141180 chr3R 9141249 9141264 7 87 5.5 3.5 4.5 1.3 104 chr3R 9141160 intron pum - chr3R 9141212 intron pum - chr3R 9141264 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-375 1487 chr3R 9278780 9278811 chr3R 9284040 9284071 Rt1a 7 5260 4.0 7.0 5.5 1.1 5291 chr3R 9278780 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284071 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-375 1488 chr3R 9304526 9304536 chr3R 9311813 9311823 Stalker4 4 7287 10.0 2.0 6.0 0.6 7297 chr3R 9304526 intron CG8861 - chr3R 9308174 intron CG8861 - chr3R 9311823 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-375 1489 chr3R 9319570 9319606 chr3R 9320004 9320041 jockey 14 434 4.0 4.5 4.2 2.7 471 chr3R 9319570 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320041 intron CG8861 - chr3R_14_9315001 chr3R_9315001 RAL-375 1490 chr3R 9361819 9361841 chr3R 9362056 9362078 pogo 8 237 2.0 0.0 1.0 4.0 259 chr3R 9361819 3` UTR CG45050 + chr3R 9361948 3` UTR CG45050 + chr3R 9362078 3` UTR CG45050 + chr3R_8_9360001 chr3R_9360001 RAL-375 1491 chr3R 9382816 9382849 chr3R 9382941 9382974 15 124 2.5 4.0 3.2 3.6 158 chr3R 9382816 intron FER - chr3R 9382895 intron FER - chr3R 9382974 intron FER - chr3R_15_9380001 chr3R_9380001 RAL-375 1492 chr3R 9526583 9526620 chr3R 9526665 9526702 9 82 1.5 1.0 1.2 4.1 119 chr3R 9526583 exon CG8176 + chr3R 9526642 3` UTR CG8176 + chr3R 9526702 3` UTR CG8176 + chr3R_9_9525001 chr3R_9525001 RAL-375 1493 chr3R 9586694 9586717 chr3R 9586786 9586809 9 92 5.0 0.5 2.8 2.4 115 chr3R 9586694 intergenic CG8301 +,P58IPK + chr3R 9586752 intergenic CG8301 +,P58IPK + chr3R 9586809 intergenic P58IPK +,CG8301 + chr3R_9_9585001 chr3R_9585001 RAL-375 1494 chr3R 9592487 9592519 chr3R 9592839 9592872 6 352 1.0 2.5 1.8 2.1 385 chr3R 9592487 intron CG8312 + chr3R 9592680 intron CG8312 + chr3R 9592872 intron CG8312 + chr3R_6_9590001 chr3R_9590001 RAL-375 1495 chr3R 9601467 9601490 chr3R 9601585 9601608 7 118 1.5 3.0 2.2 2.2 141 chr3R 9601467 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601608 intron CG8312 + chr3R_7_9600001 chr3R_9600001 RAL-375 1496 chr3R 9646686 9646710 chr3R 9646962 9646994 10 284 5.0 4.0 4.5 1.8 308 chr3R 9646686 intron Dh44 + chr3R 9646840 intron Dh44 + chr3R 9646994 intron Dh44 + chr3R_10_9645001 chr3R_9645001 RAL-375 1497 chr3R 9668688 9668699 chr3R 9668766 9668773 4 77 1.5 3.5 2.5 1.1 85 chr3R 9668688 intron CG9492 - chr3R 9668730 intron CG9492 - chr3R 9668773 intron CG9492 - chr3R_4_9665001 chr3R_9665001 RAL-375 1498 chr3R 10037659 10037684 chr3R 10037738 10037766 14 81 4.5 1.0 2.8 3.7 107 chr3R 10037659 intron Mical - chr3R 10037712 intron Mical - chr3R 10037766 intron Mical - chr3R_14_10035001 chr3R_10035001 RAL-375 1499 chr3R 10068974 10068983 chr3R 10069083 10069091 5 109 4.0 5.5 4.8 0.9 117 chr3R 10068974 intergenic CG33784 + chr3R 10069032 intergenic CG33784 + chr3R 10069091 intergenic not near genes chr3R_5_10065001 chr3R_10065001 RAL-375 1500 chr3R 10068984 10069000 chr3R 10069082 10069086 8 103 2.0 5.0 3.5 1.8 102 chr3R 10068984 intergenic CG33784 + chr3R 10069035 intergenic CG33784 + chr3R 10069086 intergenic not near genes chr3R_8_10065001 chr3R_10065001 RAL-375 1501 chr3R 10073775 10073804 chr3R 10073884 10073913 9 109 1.5 5.5 3.5 2.0 138 chr3R 10073775 intergenic nerfin-2 +,CG5361 - chr3R 10073844 3` UTR CG5361 - chr3R 10073913 exon CG5361 - chr3R_9_10070001 chr3R_10070001 RAL-375 1502 chr3R 10140428 10140463 chr3R 10140519 10140554 10 91 5.0 0.0 2.5 2.9 126 chr3R 10140428 3` UTR TAF1B - chr3R 10140491 3` UTR TAF1B - chr3R 10140554 3` UTR TAF1B - chr3R_10_10140001 chr3R_10140001 RAL-375 1503 chr3R 10146683 10146709 chr3R 10146789 10146815 6 106 1.5 2.5 2.0 2.0 132 chr3R 10146683 intron Invadolysin + chr3R 10146749 intron Invadolysin + chr3R 10146815 intron Invadolysin + chr3R_6_10145001 chr3R_10145001 RAL-375 1504 chr3R 10160324 10160351 chr3R 10164378 10164405 12 4055 42.5 36.0 39.2 0.3 4081 chr3R 10160324 exon CG6254 - chr3R 10162364 intron Best1 - chr3R 10164405 intron Best1 - chr3R_12_10160001 chr3R_10160001 RAL-375 1505 chr3R 10183104 10183111 chr3R 10183181 10183187 4 77 1.5 1.0 1.2 1.8 83 chr3R 10183104 intron CG12814 - chr3R 10183146 intron CG12814 - chr3R 10183187 intron CG12814 - chr3R_4_10180001 chr3R_10180001 RAL-375 1506 chr3R 10231797 10231815 chr3R 10237373 10237392 mdg3 6 5576 4.0 5.0 4.5 1.1 5595 chr3R 10231797 intron CG42795 + chr3R 10234594 intron CG42795 + chr3R 10237392 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-375 1507 chr3R 10428579 10428610 chr3R 10428772 10428817 7 200 1.5 0.0 0.8 3.9 238 chr3R 10428579 intergenic not near genes chr3R 10428698 intergenic not near genes chr3R 10428817 intergenic not near genes chr3R_7_10425001 chr3R_10425001 RAL-375 1508 chr3R 10531870 10531893 chr3R 10531951 10531973 5 81 0.5 1.0 0.8 2.8 103 chr3R 10531870 intron hth - chr3R 10531922 intron hth - chr3R 10531973 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-375 1509 chr3R 10593447 10593461 chr3R 10593532 10593545 4 85 0.5 4.5 2.5 1.1 98 chr3R 10593447 intron hth - chr3R 10593496 intron hth - chr3R 10593545 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-375 1510 chr3R 10641595 10641621 chr3R 10641675 10641701 8 80 0.0 5.0 2.5 2.3 106 chr3R 10641595 5` UTR CR44018 + chr3R 10641648 5` UTR CR44018 + chr3R 10641701 5` UTR CR44018 + chr3R_8_10640001 chr3R_10640001 RAL-375 1511 chr3R 10646111 10646137 chr3R 10646261 10646288 6 148 3.0 2.0 2.5 1.7 177 chr3R 10646111 intergenic CR44018 + chr3R 10646200 intergenic CR44018 + chr3R 10646288 intergenic not near genes chr3R_6_10645001 chr3R_10645001 RAL-375 1512 chr3R 10734015 10734029 chr3R 10734082 10734111 6 78 1.0 3.5 2.2 1.9 96 chr3R 10734015 intergenic not near genes chr3R 10734063 intergenic not near genes chr3R 10734111 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-375 1513 chr3R 10804186 10804202 chr3R 10811713 10811734 17.6 7 7531 0.5 3.0 1.8 2.5 7548 chr3R 10804186 intergenic CG14692 - chr3R 10807960 intergenic not near genes chr3R 10811734 3` UTR CG14693 - chr3R_7_10805001 chr3R_10805001 RAL-375 1514 chr3R 10817220 10817252 chr3R 10817302 10817335 10 82 2.0 1.0 1.5 4.0 115 chr3R 10817220 3` UTR CG4089 + chr3R 10817278 3` UTR CG4089 + chr3R 10817335 3` UTR CG4089 + chr3R_10_10815001 chr3R_10815001 RAL-375 1515 chr3R 10914774 10914798 chr3R 10914851 10914875 8 76 7.0 4.0 5.5 1.2 101 chr3R 10914774 intergenic not near genes chr3R 10914824 intergenic not near genes chr3R 10914875 intergenic not near genes chr3R_8_10910001 chr3R_10910001 RAL-375 1516 chr3R 10918043 10918080 chr3R 10920763 10920800 18 2718 2.0 4.5 3.2 4.3 2757 chr3R 10918043 intergenic not near genes chr3R 10919422 intergenic not near genes chr3R 10920800 intergenic not near genes chr3R_18_10915001 chr3R_10915001 RAL-375 1517 chr3R 10957864 10957883 chr3R 10963253 10963272 Rt1c 5 5388 6.5 4.5 5.5 0.8 5408 chr3R 10957864 intergenic not near genes chr3R 10960568 intergenic not near genes chr3R 10963272 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-375 1518 chr3R 10965475 10965510 chr3R 10965552 10965586 7 76 0.5 1.5 1.0 3.5 111 chr3R 10965475 intergenic not near genes chr3R 10965530 intergenic not near genes chr3R 10965586 intergenic not near genes chr3R_7_10965001 chr3R_10965001 RAL-375 1519 chr3R 11078953 11078979 chr3R 11079033 11079059 6 80 2.5 2.0 2.2 1.9 106 chr3R 11078953 intergenic not near genes chr3R 11079006 intergenic not near genes chr3R 11079059 intergenic not near genes chr3R_6_11075001 chr3R_11075001 RAL-375 1520 chr3R 11085460 11085489 chr3R 11085537 11085566 7 76 0.5 2.0 1.2 3.2 106 chr3R 11085460 3` UTR CR44940 - chr3R 11085513 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-375 1521 chr3R 11102332 11102350 chr3R 11102412 11102412 7 78 4.5 4.5 4.5 1.3 80 chr3R 11102332 intergenic not near genes chr3R 11102372 intergenic not near genes chr3R 11102412 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-375 1522 chr3R 11103169 11103181 chr3R 11103251 11103262 7 82 0.0 0.0 0.0 7.0 93 chr3R 11103169 intergenic not near genes chr3R 11103216 intergenic not near genes chr3R 11103262 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-375 1523 chr3R 11130118 11130146 chr3R 11130206 11130218 6 86 1.5 0.0 0.8 3.3 100 chr3R 11130118 intergenic not near genes chr3R 11130168 intergenic not near genes chr3R 11130218 intergenic not near genes chr3R_6_11130001 chr3R_11130001 RAL-375 1524 chr3R 11151667 11151696 chr3R 11156560 11156590 12 4893 25.5 13.5 19.5 0.6 4923 chr3R 11151667 3` UTR Ugt86Di - chr3R 11154128 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156590 intergenic Ugt86Dc + chr3R_12_11150001 chr3R_11150001 RAL-375 1525 chr3R 11284942 11284952 chr3R 11285025 11285036 4 83 2.5 3.5 3.0 1.0 94 chr3R 11284942 intron CR31386 - chr3R 11284989 intron CR31386 - chr3R 11285036 intron CR31386 - chr3R_4_11280001 chr3R_11280001 RAL-375 1526 chr3R 11284954 11284974 chr3R 11285023 11285029 5 73 0.5 3.5 2.0 1.7 75 chr3R 11284954 intron CR31386 - chr3R 11284992 intron CR31386 - chr3R 11285029 intron CR31386 - chr3R_5_11280001 chr3R_11280001 RAL-375 1527 chr3R 11379243 11379269 chr3R 11388390 11388423 roo 11 9154 1.5 4.0 2.8 2.9 9180 chr3R 11379243 intron pros + chr3R 11383833 intron pros + chr3R 11388423 intron pros + chr3R_11_11380001 chr3R_11380001 RAL-375 1528 chr3R 11404944 11404968 chr3R 11405024 11405024 5 75 2.0 5.5 3.8 1.0 80 chr3R 11404944 3` UTR pros + chr3R 11404984 3` UTR pros + chr3R 11405024 3` UTR pros + chr3R_5_11400001 chr3R_11400001 RAL-375 1529 chr3R 11408756 11408782 chr3R 11408850 11408876 12 92 6.0 1.5 3.8 2.5 120 chr3R 11408756 3` UTR mRpL40 + chr3R 11408816 3` UTR mgr - chr3R 11408876 3` UTR mgr - chr3R_12_11405001 chr3R_11405001 RAL-375 1530 chr3R 11452084 11452103 chr3R 11452171 11452190 10 86 1.0 4.0 2.5 2.9 106 chr3R 11452084 intron CG17230 + chr3R 11452137 intron CG17230 + chr3R 11452190 intron CG17230 + chr3R_10_11450001 chr3R_11450001 RAL-375 1531 chr3R 11455581 11455610 chr3R 11455707 11455736 10 126 4.5 3.0 3.8 2.1 155 chr3R 11455581 intron,intron CG17230 +,PGRP-LB - chr3R 11455658 intron,intron CG17230 +,PGRP-LB - chr3R 11455736 intron,intron CG17230 +,PGRP-LB - chr3R_10_11455001 chr3R_11455001 RAL-375 1532 chr3R 11476952 11476973 chr3R 11477054 11477075 10 102 1.5 2.5 2.0 3.3 123 chr3R 11476952 intergenic not near genes chr3R 11477014 intergenic not near genes chr3R 11477075 intergenic not near genes chr3R_10_11475001 chr3R_11475001 RAL-375 1533 chr3R 11549814 11549817 chr3R 11549892 11549895 4 78 7.0 3.0 5.0 0.7 81 chr3R 11549814 intergenic not near genes chr3R 11549854 intergenic not near genes chr3R 11549895 intergenic not near genes chr3R_4_11545001 chr3R_11545001 RAL-375 1534 chr3R 11557773 11557795 chr3R 11557851 11557873 8 78 2.5 3.0 2.8 2.1 100 chr3R 11557773 intergenic CG10898 + chr3R 11557823 5` UTR CG10898 + chr3R 11557873 5` UTR CG10898 + chr3R_8_11555001 chr3R_11555001 RAL-375 1535 chr3R 11664792 11664820 chr3R 11664884 11664896 9 87 5.0 1.5 3.2 2.1 104 chr3R 11664792 intron CG42327 + chr3R 11664844 intron CG42327 + chr3R 11664896 intron CG42327 + chr3R_9_11660001 chr3R_11660001 RAL-375 1536 chr3R 11694745 11694755 chr3R 11694837 11694848 6 93 2.0 0.0 1.0 3.0 103 chr3R 11694745 intergenic Fer3 - chr3R 11694796 intergenic Fer3 - chr3R 11694848 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-375 1537 chr3R 11710205 11710238 chr3R 11710283 11710315 12 77 1.5 6.0 3.8 2.5 110 chr3R 11710205 intergenic not near genes chr3R 11710260 intergenic not near genes chr3R 11710315 intergenic not near genes chr3R_12_11710001 chr3R_11710001 RAL-375 1538 chr3R 11841074 11841096 chr3R 11846265 11846275 BS 7 5186 7.0 2.5 4.8 1.2 5201 chr3R 11841074 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846275 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-375 1539 chr3R 11853434 11853473 chr3R 11853583 11853620 8 147 0.5 5.5 3.0 2.0 186 chr3R 11853434 intron CG6959 - chr3R 11853527 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_8_11850001 chr3R_11850001 RAL-375 1540 chr3R 11853774 11853796 chr3R 11853879 11853901 7 102 4.5 3.5 4.0 1.4 127 chr3R 11853774 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853901 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-375 1541 chr3R 11920973 11921003 chr3R 11921070 11921100 9 93 2.5 4.0 3.2 2.1 127 chr3R 11920973 intron Cad87A - chr3R 11921036 intron Cad87A - chr3R 11921100 intron Cad87A - chr3R_9_11920001 chr3R_11920001 RAL-375 1542 chr3R 12022886 12022916 chr3R 12025063 12025092 pogo 13 2177 2.5 4.5 3.5 2.9 2206 chr3R 12022886 intergenic not near genes chr3R 12023989 intergenic not near genes chr3R 12025092 intergenic not near genes chr3R_13_12020001 chr3R_12020001 RAL-375 1543 chr3R 12029936 12029958 chr3R 12030023 12030045 5 87 1.5 4.0 2.8 1.3 109 chr3R 12029936 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029990 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030045 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_5_12025001 chr3R_12025001 RAL-375 1544 chr3R 12045178 12045202 chr3R 12045254 12045277 10 76 0.5 3.5 2.0 3.3 99 chr3R 12045178 intergenic not near genes chr3R 12045228 intergenic not near genes chr3R 12045277 intergenic not near genes chr3R_10_12045001 chr3R_12045001 RAL-375 1545 chr3R 12081997 12082021 chr3R 12082072 12082097 4 76 2.0 0.5 1.2 1.8 100 chr3R 12081997 intron CG14741 - chr3R 12082047 intron CG14741 - chr3R 12082097 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-375 1546 chr3R 12111909 12111921 chr3R 12111985 12111997 7 76 0.0 3.0 1.5 2.8 88 chr3R 12111909 intergenic dpr17 + chr3R 12111953 intergenic not near genes chr3R 12111997 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-375 1547 chr3R 12154031 12154031 chr3R 12154459 12154480 5 431 19.5 19.5 19.5 0.2 449 chr3R 12154031 intron dpr15 - chr3R 12154256 intron dpr15 - chr3R 12154480 intron dpr15 - chr3R_5_12150001 chr3R_12150001 RAL-375 1548 chr3R 12267854 12267886 chr3R 12267934 12267966 11 80 1.5 3.0 2.2 3.4 112 chr3R 12267854 intron svp + chr3R 12267910 intron svp + chr3R 12267966 intron svp + chr3R_11_12265001 chr3R_12265001 RAL-375 1549 chr3R 12340196 12340221 chr3R 12340287 12340309 13 88 6.0 5.5 5.8 1.9 113 chr3R 12340196 intergenic not near genes chr3R 12340252 intergenic not near genes chr3R 12340309 intergenic not near genes chr3R_13_12340001 chr3R_12340001 RAL-375 1550 chr3R 12344130 12344157 chr3R 12344207 12344234 6 77 3.0 2.5 2.8 1.6 104 chr3R 12344130 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344234 intergenic not near genes chr3R_6_12340001 chr3R_12340001 RAL-375 1551 chr3R 12546452 12546486 chr3R 12546535 12546569 14 82 4.5 4.0 4.2 2.7 117 chr3R 12546452 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546569 intron Octbeta3R - chr3R_14_12545001 chr3R_12545001 RAL-375 1552 chr3R 12599377 12599408 chr3R 12599460 12599480 10 82 3.0 4.0 3.5 2.2 103 chr3R 12599377 intergenic not near genes chr3R 12599428 intergenic not near genes chr3R 12599480 intergenic not near genes chr3R_10_12595001 chr3R_12595001 RAL-375 1553 chr3R 12628616 12628632 chr3R 12628699 12628710 6 81 8.5 9.0 8.8 0.6 94 chr3R 12628616 intron Snx3 + chr3R 12628663 intron Snx3 + chr3R 12628710 intron Snx3 + chr3R_6_12625001 chr3R_12625001 RAL-375 1554 chr3R 12733474 12733505 chr3R 12733551 12733582 11 74 3.5 3.5 3.5 2.4 108 chr3R 12733474 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733582 intergenic not near genes chr3R_11_12730001 chr3R_12730001 RAL-375 1555 chr3R 12739038 12739064 chr3R 12739114 12739140 10 76 2.5 6.5 4.5 1.8 102 chr3R 12739038 intergenic not near genes chr3R 12739089 intergenic not near genes chr3R 12739140 intergenic not near genes chr3R_10_12735001 chr3R_12735001 RAL-375 1556 chr3R 12763138 12763155 chr3R 12763214 12763232 5 77 0.5 2.0 1.2 2.3 94 chr3R 12763138 intron beat-Vc - chr3R 12763185 intron beat-Vc - chr3R 12763232 intron beat-Vc - chr3R_5_12760001 chr3R_12760001 RAL-375 1557 chr3R 12866492 12866513 chr3R 12866643 12866664 5 151 4.0 3.5 3.8 1.0 172 chr3R 12866492 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866664 intergenic not near genes chr3R_5_12865001 chr3R_12865001 RAL-375 1558 chr3R 12920158 12920186 chr3R 12925361 12925389 copia 6 5202 1.0 7.5 4.2 1.2 5231 chr3R 12920158 intron beat-Vb + chr3R 12922774 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-375 1559 chr3R 13045798 13045800 chr3R 13053035 13053037 5 7237 31.0 27.0 29.0 0.2 7239 chr3R 13045798 exon Hsc70-2 + chr3R 13049418 3` UTR CG7966 - chr3R 13053037 intron pic + chr3R_5_13045001 chr3R_13045001 RAL-375 1560 chr3R 13067006 13067131 chr3R 13067092 13067207 5 78 0.0 0.0 0.0 5.0 201 chr3R 13067006 intron sim + chr3R 13067106 intron sim + chr3R 13067207 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-375 1561 chr3R 13135836 13135840 chr3R 13138001 13138004 pogo 5 2164 2.0 1.0 1.5 2.0 2168 chr3R 13135836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136920 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138004 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-375 1562 chr3R 13138322 13138346 chr3R 13138409 13138434 7 87 0.0 1.5 0.8 3.9 112 chr3R 13138322 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138378 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138434 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-375 1563 chr3R 13143043 13143064 chr3R 13148619 13148640 mdg3 9 5576 3.5 7.0 5.2 1.5 5597 chr3R 13143043 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148640 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-375 1564 chr3R 7773344 7773344 chr3R 13217322 13217322 4 5443978 12.5 13.0 12.8 0.3 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-375 1565 chr3R 13314106 13314112 chr3R 13318894 13318900 Doc 4 4788 3.5 4.0 3.8 0.8 4794 chr3R 13314106 intergenic not near genes chr3R 13316503 intergenic not near genes chr3R 13318900 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-375 1566 chr3R 13349006 13349034 chr3R 13349082 13349107 6 74 2.5 3.5 3.0 1.5 101 chr3R 13349006 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349107 intergenic not near genes chr3R_6_13345001 chr3R_13345001 RAL-375 1567 chr3R 13435387 13435417 chr3R 13435562 13435592 6 175 2.5 2.5 2.5 1.7 205 chr3R 13435387 intergenic yrt - chr3R 13435490 intergenic not near genes chr3R 13435592 intergenic not near genes chr3R_6_13435001 chr3R_13435001 RAL-375 1568 chr3R 13603055 13603350 chr3R 13603146 13603442 6 92 3.0 1.5 2.2 1.9 387 chr3R 13603055 intergenic not near genes chr3R 13603248 intergenic not near genes chr3R 13603442 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-375 1569 chr3R 13603357 13603370 chr3R 13603444 13603446 4 86 1.5 2.0 1.8 1.4 89 chr3R 13603357 intergenic not near genes chr3R 13603402 intergenic not near genes chr3R 13603446 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-375 1570 chr3R 13604067 13604088 chr3R 13604302 13604323 10 234 1.0 2.5 1.8 3.6 256 chr3R 13604067 intergenic not near genes chr3R 13604195 intergenic not near genes chr3R 13604323 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-375 1571 chr3R 13625701 13625725 chr3R 13625782 13625806 9 81 3.0 2.5 2.8 2.4 105 chr3R 13625701 intergenic not near genes chr3R 13625754 intergenic not near genes chr3R 13625806 intergenic not near genes chr3R_9_13625001 chr3R_13625001 RAL-375 1572 chr3R 13693027 13693028 chr3R 21907534 21907536 10 8214507 15.0 20.0 17.5 0.5 8214509 chr3R 13693027 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-375 1573 chr3R 13830752 13830771 chr3R 13830916 13830928 7 163 0.5 2.5 1.5 2.8 176 chr3R 13830752 intergenic not near genes chr3R 13830840 intergenic not near genes chr3R 13830928 intergenic not near genes chr3R_7_13830001 chr3R_13830001 RAL-375 1574 chr3R 13863679 13863716 chr3R 13863767 13863777 8 81 1.5 1.5 1.5 3.2 98 chr3R 13863679 intergenic not near genes chr3R 13863728 intergenic not near genes chr3R 13863777 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-375 1575 chr3R 13975374 13975404 chr3R 13975454 13975484 11 80 2.0 3.0 2.5 3.1 110 chr3R 13975374 intron rdx - chr3R 13975429 intron rdx - chr3R 13975484 intron rdx - chr3R_11_13975001 chr3R_13975001 RAL-375 1576 chr3R 14014300 14014304 chr3R 14014432 14014436 4 132 1.5 0.0 0.8 2.2 136 chr3R 14014300 intron rdx - chr3R 14014368 intron rdx - chr3R 14014436 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-375 1577 chr3R 14021648 14021668 chr3R 14023465 14023484 S-element 10 1816 6.5 4.0 5.2 1.6 1836 chr3R 14021648 intron rdx - chr3R 14022566 intron rdx - chr3R 14023484 intron rdx - chr3R_10_14020001 chr3R_14020001 RAL-375 1578 chr3R 14062843 14062876 chr3R 14062920 14062930 12 74 1.5 4.0 2.8 3.2 87 chr3R 14062843 intron foxo + chr3R 14062886 intron foxo + chr3R 14062930 intron foxo + chr3R_12_14060001 chr3R_14060001 RAL-375 1579 chr3R 14117436 14117472 chr3R 14117512 14117548 8 76 3.0 2.5 2.8 2.1 112 chr3R 14117436 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117548 intron Kif19A - chr3R_8_14115001 chr3R_14115001 RAL-375 1580 chr3R 14166681 14166697 chr3R 14167325 14167342 7 644 3.5 5.0 4.2 1.3 661 chr3R 14166681 3` UTR Dop1R1 - chr3R 14167012 3` UTR Dop1R1 - chr3R 14167342 3` UTR Dop1R1 - chr3R_7_14165001 chr3R_14165001 RAL-375 1581 chr3R 14180813 14180837 chr3R 14185578 14185602 F-element 5 4764 1.0 2.0 1.5 2.0 4789 chr3R 14180813 intron Dop1R1 - chr3R 14183208 intron Dop1R1 - chr3R 14185602 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-375 1582 chr3R 14194428 14194457 chr3R 14203576 14203606 roo 8 9149 6.0 3.5 4.8 1.4 9178 chr3R 14194428 intron Dop1R1 - chr3R 14199017 intron Dop1R1 - chr3R 14203606 intron Dop1R1 - chr3R_8_14195001 chr3R_14195001 RAL-375 1583 chr3R 14246397 14246413 chr3R 14247889 14247891 jockey 6 1492 3.0 2.5 2.8 1.6 1494 chr3R 14246397 intergenic not near genes chr3R 14247144 intergenic not near genes chr3R 14247891 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-375 1584 chr3R 14364062 14364090 chr3R 14364137 14364166 10 75 3.0 4.5 3.8 2.1 104 chr3R 14364062 intron NK7.1 - chr3R 14364114 intron NK7.1 - chr3R 14364166 intron NK7.1 - chr3R_10_14360001 chr3R_14360001 RAL-375 1585 chr3R 14458890 14458914 chr3R 14458971 14458995 5 81 0.0 4.5 2.2 1.6 105 chr3R 14458890 intron cv-c - chr3R 14458942 intron cv-c - chr3R 14458995 intron cv-c - chr3R_5_14455001 chr3R_14455001 RAL-375 1586 chr3R 14485583 14485608 chr3R 14485749 14485775 12 168 5.0 2.5 3.8 2.5 192 chr3R 14485583 intergenic not near genes chr3R 14485679 intergenic not near genes chr3R 14485775 intergenic not near genes chr3R_12_14485001 chr3R_14485001 RAL-375 1587 chr3R 14585684 14585710 chr3R 14585768 14585794 11 83 5.0 4.5 4.8 1.9 110 chr3R 14585684 intron stumps + chr3R 14585739 intron stumps + chr3R 14585794 intron stumps + chr3R_11_14585001 chr3R_14585001 RAL-375 1588 chr3R 14662317 14662339 chr3R 14662398 14662420 12 81 3.0 3.5 3.2 2.9 103 chr3R 14662317 intron Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662420 exon Rad17 - chr3R_12_14660001 chr3R_14660001 RAL-375 1589 chr3R 14704391 14704415 chr3R 14704468 14704492 7 76 3.5 4.0 3.8 1.5 101 chr3R 14704391 intron kibra - chr3R 14704442 intron kibra - chr3R 14704492 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-375 1590 chr3R 14779070 14779093 chr3R 14779150 14779173 7 80 3.5 5.5 4.5 1.3 103 chr3R 14779070 intron jvl + chr3R 14779122 intron jvl + chr3R 14779173 intron jvl + chr3R_7_14775001 chr3R_14775001 RAL-375 1591 chr3R 14949286 14949301 chr3R 14949363 14949365 5 73 11.0 2.5 6.8 0.6 79 chr3R 14949286 intergenic not near genes chr3R 14949326 intergenic not near genes chr3R 14949365 intergenic not near genes chr3R_5_14945001 chr3R_14945001 RAL-375 1592 chr3R 14953988 14954015 chr3R 14954093 14954120 12 105 2.0 2.0 2.0 4.0 132 chr3R 14953988 intergenic not near genes chr3R 14954054 intergenic not near genes chr3R 14954120 intergenic not near genes chr3R_12_14950001 chr3R_14950001 RAL-375 1593 chr3R 15026331 15026345 chr3R 15026417 15026431 4 86 4.0 2.5 3.2 1.0 100 chr3R 15026331 intergenic not near genes chr3R 15026381 intergenic not near genes chr3R 15026431 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-375 1594 chr3R 15059274 15059480 chr3R 15059468 15059567 BS 8 100 0.0 0.0 0.0 8.0 293 chr3R 15059274 intron dpr9 - chr3R 15059420 intron dpr9 - chr3R 15059567 intron dpr9 - chr3R_8_15055001 chr3R_15055001 RAL-375 1595 chr3R 15079807 15079835 chr3R 15080048 15080076 pogo 9 241 5.0 1.0 3.0 2.2 269 chr3R 15079807 3` UTR CG6966 - chr3R 15079942 3` UTR CG6966 - chr3R 15080076 3` UTR CG6966 - chr3R_9_15075001 chr3R_15075001 RAL-375 1596 chr3R 15102503 15102531 chr3R 15109758 15109786 412 10 7255 4.0 1.5 2.8 2.6 7283 chr3R 15102503 intron CG42788 - chr3R 15106144 intron CG42788 - chr3R 15109786 intron CG42788 - chr3R_10_15105001 chr3R_15105001 RAL-375 1597 chr3R 15114918 15114947 chr3R 15114996 15115023 6 77 4.0 3.0 3.5 1.3 105 chr3R 15114918 intron CG42788 - chr3R 15114970 intron CG42788 - chr3R 15115023 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-375 1598 chr3R 15127798 15127809 chr3R 15127878 15127889 5 80 1.5 1.0 1.2 2.3 91 chr3R 15127798 intron CG42788 - chr3R 15127844 intron CG42788 - chr3R 15127889 intron CG42788 - chr3R_5_15125001 chr3R_15125001 RAL-375 1599 chr3R 15132055 15132081 chr3R 15135115 15135141 Juan 17 3057 15.5 8.5 12.0 1.3 3086 chr3R 15132055 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_17_15130001 chr3R_15130001 RAL-375 1600 chr3R 15130873 15130883 chr3R 15141235 15141244 4 10362 18.5 27.5 23.0 0.2 10371 chr3R 15130873 intron CG42788 - chr3R 15136058 exon CG6912 - chr3R 15141244 exon CG3987 + chr3R_4_15135001 chr3R_15135001 RAL-375 1601 chr3R 15146530 15146544 chr3R 15146625 15146643 5 97 1.5 4.0 2.8 1.3 113 chr3R 15146530 intron GlyS - chr3R 15146586 intron GlyS - chr3R 15146643 intron GlyS - chr3R_5_15145001 chr3R_15145001 RAL-375 1602 chr3R 15162546 15162553 chr3R 15167309 15167321 F-element 5 4767 4.5 0.0 2.2 1.6 4775 chr3R 15162546 intron Gyc88E + chr3R 15164934 intron Gyc88E + chr3R 15167321 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-375 1603 chr3R 15308921 15308951 chr3R 15309007 15309037 11 84 1.5 3.0 2.2 3.4 116 chr3R 15308921 intergenic Tm1 + chr3R 15308979 intergenic Tm1 + chr3R 15309037 intergenic Tm1 + chr3R_11_15305001 chr3R_15305001 RAL-375 1604 chr3R 15566419 15566447 chr3R 15566500 15566531 7 83 2.5 1.5 2.0 2.3 112 chr3R 15566419 intergenic not near genes chr3R 15566475 intergenic not near genes chr3R 15566531 intergenic not near genes chr3R_7_15565001 chr3R_15565001 RAL-375 1605 chr3R 15601166 15601195 chr3R 15608688 15608716 412 14 7521 5.5 3.5 4.5 2.5 7550 chr3R 15601166 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_14_15600001 chr3R_15600001 RAL-375 1606 chr3R 15618754 15618763 chr3R 15626226 15626234 blood 5 7473 2.0 7.0 4.5 0.9 7480 chr3R 15618754 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626234 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-375 1607 chr3R 15646789 15646798 chr3R 15646872 15646880 4 83 2.0 2.5 2.2 1.2 91 chr3R 15646789 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646880 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-375 1608 chr3R 15710643 15710672 chr3R 15710722 15710752 11 79 3.0 3.5 3.2 2.6 109 chr3R 15710643 intergenic not near genes chr3R 15710698 intergenic not near genes chr3R 15710752 intergenic not near genes chr3R_11_15710001 chr3R_15710001 RAL-375 1609 chr3R 15734178 15734210 chr3R 15734261 15734301 4 89 2.5 2.5 2.5 1.1 123 chr3R 15734178 intergenic not near genes chr3R 15734240 intergenic not near genes chr3R 15734301 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-375 1610 chr3R 15777699 15777716 chr3R 15777833 15777848 6 134 0.0 1.5 0.8 3.3 149 chr3R 15777699 intergenic CG4525 + chr3R 15777774 intergenic CG4525 + chr3R 15777848 intergenic CG4525 + chr3R_6_15775001 chr3R_15775001 RAL-375 1611 chr3R 16048851 16048883 chr3R 16048941 16048973 6 88 1.0 4.5 2.8 1.6 122 chr3R 16048851 intron ird5 - chr3R 16048912 intron ird5 - chr3R 16048973 intron ird5 - chr3R_6_16045001 chr3R_16045001 RAL-375 1612 chr3R 16112806 16112823 chr3R 16112892 16112909 9 86 5.0 2.0 3.5 2.0 103 chr3R 16112806 intergenic not near genes chr3R 16112858 intergenic not near genes chr3R 16112909 intergenic not near genes chr3R_9_16110001 chr3R_16110001 RAL-375 1613 chr3R 16189411 16189441 chr3R 16189812 16189842 invader4 15 402 3.5 4.0 3.8 3.1 431 chr3R 16189411 intron sra + chr3R 16189626 intron sra + chr3R 16189842 intron sra + chr3R_15_16185001 chr3R_16185001 RAL-375 1614 chr3R 16260838 16260961 chr3R 16260918 16261059 7 90 4.0 5.0 4.5 1.3 221 chr3R 16260838 intergenic not near genes chr3R 16260948 intergenic bor - chr3R 16261059 intergenic bor - chr3R_7_16260001 chr3R_16260001 RAL-375 1615 chr3R 16284891 16284922 chr3R 16284967 16285001 11 76 2.5 4.0 3.2 2.6 110 chr3R 16284891 intron gish + chr3R 16284946 intron gish + chr3R 16285001 intron gish + chr3R_11_16280001 chr3R_16280001 RAL-375 1616 chr3R 16307435 16307457 chr3R 16307513 16307533 7 78 3.0 3.5 3.2 1.7 98 chr3R 16307435 intron Zip89B + chr3R 16307484 intron Zip89B + chr3R 16307533 intron Zip89B + chr3R_7_16305001 chr3R_16305001 RAL-375 1617 chr3R 16490671 16490698 chr3R 16490751 16490775 6 79 6.0 4.0 5.0 1.0 104 chr3R 16490671 exon Cad89D - chr3R 16490723 exon Cad89D - chr3R 16490775 exon Cad89D - chr3R_6_16490001 chr3R_16490001 RAL-375 1618 chr3R 16495952 16495977 chr3R 16496029 16496054 9 72 5.0 3.5 4.2 1.7 102 chr3R 16495952 intergenic not near genes chr3R 16496003 intergenic not near genes chr3R 16496054 intergenic not near genes chr3R_9_16495001 chr3R_16495001 RAL-375 1619 chr3R 16590511 16590527 chr3R 16590605 16590621 9 94 3.5 3.0 3.2 2.1 110 chr3R 16590511 intergenic not near genes chr3R 16590566 intergenic not near genes chr3R 16590621 intergenic not near genes chr3R_9_16590001 chr3R_16590001 RAL-375 1620 chr3R 16672802 16672819 chr3R 16673013 16673030 6 211 1.5 1.0 1.2 2.7 228 chr3R 16672802 intron Ubx - chr3R 16672916 intron Ubx - chr3R 16673030 intron Ubx - chr3R_6_16670001 chr3R_16670001 RAL-375 1621 chr3R 16676391 16676417 chr3R 16676476 16676502 8 83 4.5 2.0 3.2 1.9 111 chr3R 16676391 intron Ubx - chr3R 16676446 intron Ubx - chr3R 16676502 intron Ubx - chr3R_8_16675001 chr3R_16675001 RAL-375 1622 chr3R 16732157 16732178 chr3R 16732253 16732274 4 96 1.5 2.0 1.8 1.4 117 chr3R 16732157 intron Ubx - chr3R 16732216 intron Ubx - chr3R 16732274 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-375 1623 chr3R 16756324 16756345 chr3R 16762515 16762535 diver 10 6190 3.5 1.5 2.5 2.9 6211 chr3R 16756324 intron bxd - chr3R 16759430 intron bxd - chr3R 16762535 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-375 1624 chr3R 16789982 16789991 chr3R 16790112 16790122 5 131 4.0 7.0 5.5 0.8 140 chr3R 16789982 3` UTR Glut3 + chr3R 16790052 intergenic Glut3 + chr3R 16790122 intergenic Glut3 + chr3R_5_16790001 chr3R_16790001 RAL-375 1625 chr3R 16921833 16921863 chr3R 16921916 16921947 9 84 0.0 3.5 1.8 3.2 114 chr3R 16921833 intron iab-8 - chr3R 16921890 intron iab-8 - chr3R 16921947 intron iab-8 - chr3R_9_16920001 chr3R_16920001 RAL-375 1626 chr3R 17121523 17121553 chr3R 17121718 17121748 7 195 2.5 1.0 1.8 2.5 225 chr3R 17121523 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121748 intron,exon cher -,CG42779 + chr3R_7_17120001 chr3R_17120001 RAL-375 1627 chr3R 17166209 17166213 chr3R 17166308 17166313 6 100 3.5 3.5 3.5 1.3 104 chr3R 17166209 intron Mur89F - chr3R 17166261 intron Mur89F - chr3R 17166313 intron Mur89F - chr3R_6_17165001 chr3R_17165001 RAL-375 1628 chr3R 17178621 17178626 chr3R 17178898 17178903 4 277 2.5 3.5 3.0 1.0 282 chr3R 17178621 intron Mur89F - chr3R 17178762 intron Mur89F - chr3R 17178903 intron Mur89F - chr3R_4_17175001 chr3R_17175001 RAL-375 1629 chr3R 17182145 17182171 chr3R 17182243 17182269 8 98 2.0 3.5 2.8 2.1 124 chr3R 17182145 intron Mur89F - chr3R 17182207 intron Mur89F - chr3R 17182269 intron Mur89F - chr3R_8_17180001 chr3R_17180001 RAL-375 1630 chr3R 17223566 17223593 chr3R 17223940 17223966 8 374 0.5 1.5 1.0 4.0 400 chr3R 17223566 intergenic CG31262 - chr3R 17223766 intergenic not near genes chr3R 17223966 intergenic not near genes chr3R_8_17220001 chr3R_17220001 RAL-375 1631 chr3R 17294668 17294702 chr3R 17295096 17295130 BS 8 428 2.0 2.0 2.0 2.7 462 chr3R 17294668 intergenic not near genes chr3R 17294899 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_8_17290001 chr3R_17290001 RAL-375 1632 chr3R 17312818 17312847 chr3R 17312903 17312914 7 79 2.0 1.5 1.8 2.5 96 chr3R 17312818 intergenic not near genes chr3R 17312866 intergenic not near genes chr3R 17312914 intergenic not near genes chr3R_7_17310001 chr3R_17310001 RAL-375 1633 chr3R 17335158 17335184 chr3R 17335234 17335259 7 75 2.5 1.0 1.8 2.5 101 chr3R 17335158 intron beat-IIa - chr3R 17335208 intron beat-IIa - chr3R 17335259 intron beat-IIa - chr3R_7_17335001 chr3R_17335001 RAL-375 1634 chr3R 17346699 17346716 chr3R 17348260 17348279 F-element 5 1563 3.5 5.0 4.2 1.0 1580 chr3R 17346699 intron beat-IIa - chr3R 17347489 intron beat-IIa - chr3R 17348279 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-375 1635 chr3R 17351868 17351892 chr3R 17352069 17352087 8 201 1.5 1.0 1.2 3.6 219 chr3R 17351868 intron beat-IIa - chr3R 17351978 intron beat-IIa - chr3R 17352087 intron beat-IIa - chr3R_8_17350001 chr3R_17350001 RAL-375 1636 chr3R 17355491 17355511 chr3R 17355569 17355589 8 78 2.5 2.5 2.5 2.3 98 chr3R 17355491 intron beat-IIa - chr3R 17355540 intron beat-IIa - chr3R 17355589 intron beat-IIa - chr3R_8_17355001 chr3R_17355001 RAL-375 1637 chr3R 17361808 17361822 chr3R 17361942 17361954 4 133 4.0 3.5 3.8 0.8 146 chr3R 17361808 intron beat-IIa - chr3R 17361881 intron beat-IIa - chr3R 17361954 intron beat-IIa - chr3R_4_17360001 chr3R_17360001 RAL-375 1638 chr3R 17461199 17461225 chr3R 17461281 17461307 6 82 1.0 1.0 1.0 3.0 108 chr3R 17461199 intergenic not near genes chr3R 17461253 intergenic not near genes chr3R 17461307 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-375 1639 chr3R 17498852 17498875 chr3R 17498994 17499005 8 140 5.5 3.0 4.2 1.5 153 chr3R 17498852 intron Dscam3 - chr3R 17498928 intron Dscam3 - chr3R 17499005 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-375 1640 chr3R 17521569 17521589 chr3R 17521729 17521747 6 159 0.0 10.5 5.2 1.0 178 chr3R 17521569 intergenic not near genes chr3R 17521658 intergenic not near genes chr3R 17521747 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-375 1641 chr3R 17591282 17591321 chr3R 17591718 17591755 F-element 6 435 2.5 2.0 2.2 1.9 473 chr3R 17591282 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591755 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-375 1642 chr3R 17647250 17647272 chr3R 17647347 17647369 8 97 0.5 2.5 1.5 3.2 119 chr3R 17647250 intergenic CG14322 + chr3R 17647310 intergenic CG14322 + chr3R 17647369 intergenic CG14322 + chr3R_8_17645001 chr3R_17645001 RAL-375 1643 chr3R 17653102 17653111 chr3R 17653172 17653201 4 83 3.5 3.0 3.2 1.0 99 chr3R 17653102 intron,intron CG14322 +,CR45223 - chr3R 17653152 intron,intron CG14322 +,CR45223 - chr3R 17653201 intron,intron CG14322 +,CR45223 - chr3R_4_17650001 chr3R_17650001 RAL-375 1644 chr3R 17823212 17823234 chr3R 17823297 17823319 9 85 2.0 3.5 2.8 2.4 107 chr3R 17823212 intron tinc + chr3R 17823266 intron tinc + chr3R 17823319 intron tinc + chr3R_9_17820001 chr3R_17820001 RAL-375 1645 chr3R 17826771 17826798 chr3R 17827102 17827127 8 330 2.5 3.0 2.8 2.1 356 chr3R 17826771 intron tinc + chr3R 17826949 intron tinc + chr3R 17827127 intron tinc + chr3R_8_17825001 chr3R_17825001 RAL-375 1646 chr3R 17925861 17925889 chr3R 17927328 17927356 hobo 10 1466 3.5 6.5 5.0 1.7 1495 chr3R 17925861 intron cpo + chr3R 17926608 intron cpo + chr3R 17927356 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-375 1647 chr3R 18041753 18041778 chr3R 18041830 18041855 7 77 2.5 0.0 1.2 3.2 102 chr3R 18041753 intergenic not near genes chr3R 18041804 intergenic not near genes chr3R 18041855 intergenic not near genes chr3R_7_18040001 chr3R_18040001 RAL-375 1648 chr3R 18108243 18108269 chr3R 18108338 18108364 11 90 1.5 3.5 2.5 3.1 121 chr3R 18108243 intron sr + chr3R 18108304 intron sr + chr3R 18108364 intron sr + chr3R_11_18105001 chr3R_18105001 RAL-375 1649 chr3R 18170160 18170178 chr3R 18170304 18170305 5 140 6.5 5.5 6.0 0.7 145 chr3R 18170160 intron PP2A-B' + chr3R 18170232 intron PP2A-B' + chr3R 18170305 intron PP2A-B' + chr3R_5_18170001 chr3R_18170001 RAL-375 1650 chr3R 18276104 18276141 chr3R 18276183 18276220 12 79 3.0 3.5 3.2 2.9 116 chr3R 18276104 intron eIF-1A + chr3R 18276162 intron eIF-1A + chr3R 18276220 intron eIF-1A + chr3R_12_18275001 chr3R_18275001 RAL-375 1651 chr3R 18279996 18280013 chr3R 18280082 18280097 6 85 6.0 0.0 3.0 1.5 101 chr3R 18279996 intron eIF-1A + chr3R 18280046 intron eIF-1A + chr3R 18280097 intron eIF-1A + chr3R_6_18280001 chr3R_18280001 RAL-375 1652 chr3R 18313957 18313984 chr3R 18314037 18314064 12 80 1.5 2.5 2.0 4.0 107 chr3R 18313957 intron PKD - chr3R 18314010 intron PKD - chr3R 18314064 intron PKD - chr3R_12_18310001 chr3R_18310001 RAL-375 1653 chr3R 18331783 18331791 chr3R 18333277 18333283 hopper2 6 1493 6.0 4.5 5.2 1.0 1500 chr3R 18331783 3` UTR CG15803 - chr3R 18332533 intron CG15803 - chr3R 18333283 3` UTR CG15803 - chr3R_6_18330001 chr3R_18330001 RAL-375 1654 chr3R 18606504 18606530 chr3R 18610736 18610762 F-element 7 4232 3.5 5.0 4.2 1.3 4258 chr3R 18606504 intron,intron qin +,CG14304 - chr3R 18608633 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 RAL-375 1655 chr3R 18617722 18617734 chr3R 18617802 18617814 4 80 2.5 4.0 3.2 1.0 92 chr3R 18617722 intron,intron qin +,CG14304 - chr3R 18617768 intron,intron qin +,CG14304 - chr3R 18617814 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-375 1656 chr3R 18770298 18770320 chr3R 18770380 18770401 8 82 1.5 2.5 2.0 2.7 103 chr3R 18770298 intron CG7720 - chr3R 18770350 intron CG7720 - chr3R 18770401 intron CG7720 - chr3R_8_18770001 chr3R_18770001 RAL-375 1657 chr3R 18785864 18785903 chr3R 18785941 18785979 15 76 1.5 3.0 2.2 4.7 115 chr3R 18785864 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785979 intron CG7720 - chr3R_15_18785001 chr3R_18785001 RAL-375 1658 chr3R 18808480 18808506 chr3R 18808550 18808582 7 72 2.0 2.0 2.0 2.3 102 chr3R 18808480 intron CG18208 - chr3R 18808531 intron CG18208 - chr3R 18808582 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-375 1659 chr3R 18812074 18812108 chr3R 18812152 18812186 11 78 6.0 4.5 5.2 1.8 112 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-375 1660 chr3R 18837429 18837457 chr3R 18837511 18837539 6 82 3.0 2.0 2.5 1.7 110 chr3R 18837429 intron CG18208 - chr3R 18837484 intron CG18208 - chr3R 18837539 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-375 1661 chr3R 19106824 19106849 chr3R 19106914 19106920 5 86 1.0 0.5 0.8 2.8 96 chr3R 19106824 intron CG6040 + chr3R 19106872 intron CG6040 + chr3R 19106920 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-375 1662 chr3R 19136406 19136408 chr3R 19139793 19139810 Bari1 14 3388 74.5 30.0 52.2 0.3 3404 chr3R 19136406 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139810 3` UTR Ppcs - chr3R_14_19135001 chr3R_19135001 RAL-375 1663 chr3R 19140265 19140301 chr3R 19140713 19140746 14 446 1.5 5.0 3.2 3.3 481 chr3R 19140265 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140746 3` UTR Ppcs - chr3R_14_19140001 chr3R_19140001 RAL-375 1664 chr3R 19469794 19469806 chr3R 19469877 19469898 5 89 3.0 0.5 1.8 1.8 104 chr3R 19469794 intron Dys + chr3R 19469846 intron Dys + chr3R 19469898 intron Dys + chr3R_5_19465001 chr3R_19465001 RAL-375 1665 chr3R 19531368 19531393 chr3R 19531472 19531497 10 101 3.0 2.0 2.5 2.9 129 chr3R 19531368 intron Dys + chr3R 19531432 intron Dys + chr3R 19531497 intron Dys + chr3R_10_19530001 chr3R_19530001 RAL-375 1666 chr3R 19533297 19533319 chr3R 19533374 19533399 6 80 4.0 2.0 3.0 1.5 102 chr3R 19533297 intron Dys + chr3R 19533348 intron Dys + chr3R 19533399 intron Dys + chr3R_6_19530001 chr3R_19530001 RAL-375 1667 chr3R 19602756 19602792 chr3R 19602834 19602870 13 78 2.0 1.0 1.5 5.2 114 chr3R 19602756 intergenic CG7333 + chr3R 19602813 intergenic CG7333 + chr3R 19602870 intergenic CG7333 + chr3R_13_19600001 chr3R_19600001 RAL-375 1668 chr3R 19702324 19702349 chr3R 19702406 19702431 5 82 3.5 3.0 3.2 1.2 107 chr3R 19702324 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702431 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-375 1669 chr3R 19716223 19716248 chr3R 19716300 19716325 8 77 0.0 0.0 0.0 8.0 102 chr3R 19716223 intergenic CG34286 - chr3R 19716274 intergenic CG34286 - chr3R 19716325 intergenic CG34286 - chr3R_8_19715001 chr3R_19715001 RAL-375 1670 chr3R 19783032 19783041 chr3R 19783149 19783158 5 117 5.5 2.5 4.0 1.0 126 chr3R 19783032 exon CG11407 + chr3R 19783095 3` UTR CG11407 + chr3R 19783158 intergenic CG11407 +,CG11453 + chr3R_5_19780001 chr3R_19780001 RAL-375 1671 chr3R 19852384 19852411 chr3R 19855100 19855127 5 2716 27.0 28.0 27.5 0.2 2743 chr3R 19852384 exon CG4662 + chr3R 19853756 3` UTR CG4662 + chr3R 19855127 exon Ire1 - chr3R_5_19850001 chr3R_19850001 RAL-375 1672 chr3R 19945970 19946001 chr3R 19946073 19946102 11 101 3.0 3.5 3.2 2.6 132 chr3R 19945970 intron Hs6st - chr3R 19946036 intron Hs6st - chr3R 19946102 intron Hs6st - chr3R_11_19945001 chr3R_19945001 RAL-375 1673 chr3R 19955350 19955364 chr3R 19955451 19955465 4 101 3.5 4.5 4.0 0.8 115 chr3R 19955350 intron Hs6st - chr3R 19955408 intron Hs6st - chr3R 19955465 intron Hs6st - chr3R_4_19955001 chr3R_19955001 RAL-375 1674 chr3R 20041113 20041148 chr3R 20041215 20041233 10 97 2.0 6.0 4.0 2.0 120 chr3R 20041113 intron CG17193 - chr3R 20041173 intron CG17193 - chr3R 20041233 intron CG17193 - chr3R_10_20040001 chr3R_20040001 RAL-375 1675 chr3R 20109536 20109567 chr3R 20114742 20114771 copia 10 5206 2.5 1.5 2.0 3.3 5235 chr3R 20109536 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114771 intergenic CG10887 + chr3R_10_20110001 chr3R_20110001 RAL-375 1676 chr3R 20156708 20156722 chr3R 20165862 20165892 roo 8 9160 2.5 4.5 3.5 1.8 9184 chr3R 20156708 intergenic not near genes chr3R 20161300 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_8_20160001 chr3R_20160001 RAL-375 1677 chr3R 20205561 20205594 chr3R 20205681 20205693 4 116 2.0 2.0 2.0 1.3 132 chr3R 20205561 intron Nlg4 + chr3R 20205627 intron Nlg4 + chr3R 20205693 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-375 1678 chr3R 20221021 20221051 chr3R 20221503 20221517 5 471 3.0 2.5 2.8 1.3 496 chr3R 20221021 intron Nlg4 + chr3R 20221269 intron Nlg4 + chr3R 20221517 intron Nlg4 + chr3R_5_20220001 chr3R_20220001 RAL-375 1679 chr3R 20231441 20231472 chr3R 20231622 20231651 5 179 28.5 16.5 22.5 0.2 210 chr3R 20231441 intron Nlg4 + chr3R 20231546 intron Nlg4 + chr3R 20231651 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-375 1680 chr3R 20245280 20245306 chr3R 20248890 20248916 F-element 4 3610 0.0 1.0 0.5 2.7 3636 chr3R 20245280 3` UTR Nlg4 + chr3R 20247098 intergenic not near genes chr3R 20248916 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-375 1681 chr3R 20252229 20252253 chr3R 20252307 20252331 4 78 0.0 1.5 0.8 2.2 102 chr3R 20252229 intergenic not near genes chr3R 20252280 intergenic cic + chr3R 20252331 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-375 1682 chr3R 20256845 20256869 chr3R 20256923 20256947 12 78 0.0 5.0 2.5 3.4 102 chr3R 20256845 intron cic + chr3R 20256896 intron cic + chr3R 20256947 intron cic + chr3R_12_20255001 chr3R_20255001 RAL-375 1683 chr3R 20266517 20266549 chr3R 20272988 20273017 Burdock 11 6471 0.0 2.5 1.2 5.0 6500 chr3R 20266517 intron cic + chr3R 20269767 intron cic + chr3R 20273017 intron cic + chr3R_11_20265001 chr3R_20265001 RAL-375 1684 chr3R 20282275 20282308 chr3R 20282351 20282384 10 76 0.0 1.0 0.5 6.7 109 chr3R 20282275 intron cic + chr3R 20282330 intron cic + chr3R 20282384 intron cic + chr3R_10_20280001 chr3R_20280001 RAL-375 1685 chr3R 20330998 20331032 chr3R 20331484 20331518 roo 11 486 2.0 2.5 2.2 3.4 520 chr3R 20330998 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331518 intergenic not near genes chr3R_11_20330001 chr3R_20330001 RAL-375 1686 chr3R 20343121 20343133 chr3R 20343300 20343312 INE-1 6 179 2.0 0.0 1.0 3.0 191 chr3R 20343121 exon Ir92a + chr3R 20343216 intron Ir92a + chr3R 20343312 intron Ir92a + chr3R_6_20340001 chr3R_20340001 RAL-375 1687 chr3R 20344218 20344239 chr3R 20344303 20344324 5 85 2.0 0.0 1.0 2.5 106 chr3R 20344218 intergenic Ir92a + chr3R 20344271 intergenic Ir92a + chr3R 20344324 intergenic Ir92a + chr3R_5_20340001 chr3R_20340001 RAL-375 1688 chr3R 20351513 20351523 chr3R 20351642 20351649 5 128 2.0 7.5 4.8 0.9 136 chr3R 20351513 intergenic not near genes chr3R 20351581 intergenic not near genes chr3R 20351649 intergenic not near genes chr3R_5_20350001 chr3R_20350001 RAL-375 1689 chr3R 20434842 20434857 chr3R 20435027 20435042 6 185 4.0 0.5 2.2 1.9 200 chr3R 20434842 intron Gfrl - chr3R 20434942 intron Gfrl - chr3R 20435042 intron Gfrl - chr3R_6_20430001 chr3R_20430001 RAL-375 1690 chr3R 20499875 20499899 chr3R 20499960 20499989 6 89 0.5 3.0 1.8 2.1 114 chr3R 20499875 intergenic Dic2 - chr3R 20499932 intergenic Dic2 - chr3R 20499989 intergenic Dic2 - chr3R_6_20495001 chr3R_20495001 RAL-375 1691 chr3R 20506584 20506615 chr3R 20507387 20507418 BS 10 802 2.0 3.0 2.5 2.9 834 chr3R 20506584 intergenic Or92a + chr3R 20507001 intergenic CG4288 - chr3R 20507418 3` UTR CG4288 - chr3R_10_20505001 chr3R_20505001 RAL-375 1692 chr3R 4475345 4475347 chr3R 20516648 20516651 micropia 4 16041303 10.0 2.5 6.2 0.6 16041306 chr3R 4475345 intron CG31523 - chr3R 12495998 intergenic not near genes chr3R 20516651 intergenic not near genes chr3R_4_12495001 chr3R_12495001 RAL-375 1693 chr3R 20594480 20594493 chr3R 20594570 20594583 6 90 4.5 0.0 2.2 1.9 103 chr3R 20594480 intron bon + chr3R 20594532 intron bon + chr3R 20594583 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-375 1694 chr3R 20596197 20596214 chr3R 20596283 20596301 4 86 2.0 2.0 2.0 1.3 104 chr3R 20596197 intron bon + chr3R 20596249 intron bon + chr3R 20596301 intron bon + chr3R_4_20595001 chr3R_20595001 RAL-375 1695 chr3R 20666718 20666744 chr3R 20667494 20667520 5 777 22.5 3.5 13.0 0.4 802 chr3R 20666718 intergenic not near genes chr3R 20667119 intergenic not near genes chr3R 20667520 intergenic not near genes chr3R_5_20665001 chr3R_20665001 RAL-375 1696 chr3R 20669923 20669943 chr3R 20670014 20670034 5 91 4.0 0.5 2.2 1.6 111 chr3R 20669923 intron Cpr92F + chr3R 20669978 intron Cpr92F + chr3R 20670034 intron Cpr92F + chr3R_5_20665001 chr3R_20665001 RAL-375 1697 chr3R 20706115 20706151 chr3R 20706274 20706309 12 158 3.5 5.0 4.2 2.3 194 chr3R 20706115 5` UTR Oamb - chr3R 20706212 5` UTR Oamb - chr3R 20706309 5` UTR Oamb - chr3R_12_20705001 chr3R_20705001 RAL-375 1698 chr3R 20716808 20716843 chr3R 20717145 20717180 16 336 4.5 5.5 5.0 2.7 372 chr3R 20716808 intergenic not near genes chr3R 20716994 intergenic not near genes chr3R 20717180 intergenic not near genes chr3R_16_20715001 chr3R_20715001 RAL-375 1699 chr3R 20733767 20733796 chr3R 20733858 20733888 11 89 3.0 4.5 3.8 2.3 121 chr3R 20733767 intergenic not near genes chr3R 20733828 intergenic not near genes chr3R 20733888 intergenic not near genes chr3R_11_20730001 chr3R_20730001 RAL-375 1700 chr3R 20764411 20764444 chr3R 20764507 20764540 7 96 2.0 0.5 1.2 3.2 129 chr3R 20764411 intron Syp + chr3R 20764476 intron Syp + chr3R 20764540 intron Syp + chr3R_7_20760001 chr3R_20760001 RAL-375 1701 chr3R 20767499 20767539 chr3R 20767593 20767633 4 95 2.5 3.0 2.8 1.1 134 chr3R 20767499 intron Syp + chr3R 20767566 intron Syp + chr3R 20767633 intron Syp + chr3R_4_20765001 chr3R_20765001 RAL-375 1702 chr3R 20788649 20788677 chr3R 20788802 20788831 5 154 2.0 2.5 2.2 1.6 182 chr3R 20788649 intron Syp + chr3R 20788740 intron Syp + chr3R 20788831 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-375 1703 chr3R 20789356 20789386 chr3R 20789464 20789492 12 108 1.5 4.5 3.0 3.0 136 chr3R 20789356 intron Syp + chr3R 20789424 intron Syp + chr3R 20789492 intron Syp + chr3R_12_20785001 chr3R_20785001 RAL-375 1704 chr3R 20809263 20809271 chr3R 20809391 20809399 4 128 12.0 14.0 13.0 0.3 136 chr3R 20809263 3` UTR Syp + chr3R 20809331 3` UTR Syp + chr3R 20809399 3` UTR Syp + chr3R_4_20805001 chr3R_20805001 RAL-375 1705 chr3R 20809170 20809199 chr3R 20813058 20813083 9 3885 17.5 38.0 27.8 0.3 3913 chr3R 20809170 3` UTR Syp + chr3R 20811126 exon Fancd2 - chr3R 20813083 exon Fancd2 - chr3R_9_20810001 chr3R_20810001 RAL-375 1706 chr3R 20850088 20850108 chr3R 20850173 20850192 6 85 1.0 0.0 0.5 4.0 104 chr3R 20850088 intergenic RpS30 + chr3R 20850140 intergenic RpS30 + chr3R 20850192 intergenic RpS30 + chr3R_6_20850001 chr3R_20850001 RAL-375 1707 chr3R 20854474 20854505 chr3R 20859269 20859294 Doc 4 4788 3.0 2.5 2.8 1.1 4820 chr3R 20854474 intron Ir93a - chr3R 20856884 intron Ir93a - chr3R 20859294 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-375 1708 chr3R 20878495 20878530 chr3R 20878579 20878613 5 84 0.5 0.0 0.2 4.2 118 chr3R 20878495 3` UTR CR44048 - chr3R 20878554 3` UTR CR44048 - chr3R 20878613 3` UTR CR44048 - chr3R_5_20875001 chr3R_20875001 RAL-375 1709 chr3R 21020400 21020433 chr3R 21020476 21020509 9 76 3.0 3.5 3.2 2.1 109 chr3R 21020400 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020509 3` UTR Rlip + chr3R_9_21020001 chr3R_21020001 RAL-375 1710 chr3R 21141678 21141705 chr3R 21150156 21150169 Tirant 7 8474 4.5 1.0 2.8 1.8 8491 chr3R 21141678 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150169 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-375 1711 chr3R 21154549 21154586 chr3R 21154753 21154801 8 212 3.0 0.0 1.5 3.2 252 chr3R 21154549 intron SNF4Agamma + chr3R 21154675 intron SNF4Agamma + chr3R 21154801 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-375 1712 chr3R 21240445 21240471 chr3R 21240537 21240554 13 91 3.5 3.0 3.2 3.1 109 chr3R 21240445 intergenic not near genes chr3R 21240500 intergenic not near genes chr3R 21240554 intergenic not near genes chr3R_13_21240001 chr3R_21240001 RAL-375 1713 chr3R 21385723 21385958 chr3R 21385773 21386034 8 73 1.5 0.0 0.8 4.4 311 chr3R 21385723 intergenic not near genes chr3R 21385878 intergenic not near genes chr3R 21386034 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-375 1714 chr3R 21472017 21472031 chr3R 21472098 21472112 6 81 4.0 4.0 4.0 1.2 95 chr3R 21472017 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-375 1715 chr3R 21609012 21609031 chr3R 21611645 21611663 NOF 8 2633 3.5 3.0 3.2 1.9 2651 chr3R 21609012 intron InR - chr3R 21610338 intron InR - chr3R 21611663 intron InR - chr3R_8_21610001 chr3R_21610001 RAL-375 1716 chr3R 21725675 21725687 chr3R 21725811 21725823 5 136 0.0 2.0 1.0 2.5 148 chr3R 21725675 intergenic not near genes chr3R 21725749 intergenic not near genes chr3R 21725823 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-375 1717 chr3R 21761123 21761155 chr3R 21768512 21768544 mdg1 5 7387 4.5 2.5 3.5 1.1 7421 chr3R 21761123 exon CG42335 + chr3R 21764834 intron CG42335 + chr3R 21768544 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-375 1718 chr3R 21784864 21784885 chr3R 21784962 21784983 9 98 1.5 0.0 0.8 5.0 119 chr3R 21784864 3` UTR,3` UTR CASK -,CRG - chr3R 21784924 3` UTR,3` UTR CASK -,CRG - chr3R 21784983 3` UTR,3` UTR CASK -,CRG - chr3R_9_21780001 chr3R_21780001 RAL-375 1719 chr3R 21790966 21790987 chr3R 21791050 21791068 4 83 3.5 3.0 3.2 1.0 102 chr3R 21790966 intron CASK - chr3R 21791017 intron CASK - chr3R 21791068 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-375 1720 chr3R 21858269 21858285 chr3R 21858363 21858378 8 94 3.5 6.0 4.8 1.4 109 chr3R 21858269 intergenic not near genes chr3R 21858324 intergenic not near genes chr3R 21858378 intergenic not near genes chr3R_8_21855001 chr3R_21855001 RAL-375 1721 chr3R 21903629 21903633 chr3R 21903726 21903730 4 97 0.0 2.0 1.0 2.0 101 chr3R 21903629 intron CG6678 + chr3R 21903680 intron CG6678 + chr3R 21903730 intron CG6678 + chr3R_4_21900001 chr3R_21900001 RAL-375 1722 chr3R 8339246 8339247 chr3R 21907534 21907534 12 13568288 21.5 20.0 20.8 0.6 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-375 1723 chr3R 21907534 21907534 chr3R 24389465 24389465 5 2481931 23.5 16.0 19.8 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-375 1724 chr3R 21907534 21907534 chr3R 28831799 28831802 37 6924268 23.5 17.5 20.5 1.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-375 1725 chr3R 8339246 8339247 chr3R 21907535 21907535 9 13568288 21.5 21.5 21.5 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-375 1726 chr3R 21907535 21907535 chr3R 28831801 28831802 78 6924266 23.5 17.0 20.2 3.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_78_25365001 chr3R_25365001 RAL-375 1727 chr3R 8339246 8339247 chr3R 21907536 21907536 4 13568289 21.5 22.0 21.8 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-375 1728 chr3R 9620955 9620957 chr3R 21907536 21907536 4 12286580 18.5 22.0 20.2 0.2 12286581 chr3R 9620955 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-375 1729 chr3R 21907536 21907536 chr3R 28831801 28831802 50 6924266 23.5 17.0 20.2 2.4 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_50_25365001 chr3R_25365001 RAL-375 1730 chr3R 21983143 21983159 chr3R 21983224 21983239 5 81 4.0 3.5 3.8 1.0 96 chr3R 21983143 intron Eip93F + chr3R 21983191 intron Eip93F + chr3R 21983239 intron Eip93F + chr3R_5_21980001 chr3R_21980001 RAL-375 1731 chr3R 22055562 22055588 chr3R 22055749 22055776 7 188 1.0 3.0 2.0 2.3 214 chr3R 22055562 intron how + chr3R 22055669 intron how + chr3R 22055776 intron how + chr3R_7_22055001 chr3R_22055001 RAL-375 1732 chr3R 22127289 22127318 chr3R 22127368 22127397 11 77 4.5 3.0 3.8 2.3 108 chr3R 22127289 intron CG42390 + chr3R 22127343 intron CG42390 + chr3R 22127397 intron CG42390 + chr3R_11_22125001 chr3R_22125001 RAL-375 1733 chr3R 22234690 22234712 chr3R 22236009 22236030 pogo 6 1319 2.0 4.5 3.2 1.4 1340 chr3R 22234690 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236030 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-375 1734 chr3R 22239489 22239502 chr3R 22248549 22248562 roo 5 9059 10.0 0.0 5.0 0.8 9073 chr3R 22239489 intron SKIP + chr3R 22244026 intron SKIP + chr3R 22248562 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-375 1735 chr3R 22330604 22330634 chr3R 22332309 22332340 10 1709 28.0 24.5 26.2 0.4 1736 chr3R 22330604 intergenic CG7080 +,CG33721 + chr3R 22331472 exon CG33721 + chr3R 22332340 exon CG13862 + chr3R_10_22330001 chr3R_22330001 RAL-375 1736 chr3R 22337790 22337817 chr3R 22337893 22337920 11 102 4.0 6.0 5.0 1.8 130 chr3R 22337790 intron CG5388 - chr3R 22337855 intron CG5388 - chr3R 22337920 intron CG5388 - chr3R_11_22335001 chr3R_22335001 RAL-375 1737 chr3R 22428582 22428607 chr3R 22428655 22428683 7 74 5.0 4.0 4.5 1.3 101 chr3R 22428582 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-375 1738 chr3R 22450543 22450578 chr3R 22453182 22453218 NOF 10 2636 5.0 3.5 4.2 1.9 2675 chr3R 22450543 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-375 1739 chr3R 22672319 22672332 chr3R 22672412 22672425 4 93 0.0 4.5 2.2 1.2 106 chr3R 22672319 intron wake + chr3R 22672372 intron wake + chr3R 22672425 intron wake + chr3R_4_22670001 chr3R_22670001 RAL-375 1740 chr3R 22797760 22797937 chr3R 22797846 22798031 14 90 0.0 0.0 0.0 14.0 271 chr3R 22797760 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798031 intergenic not near genes chr3R_14_22795001 chr3R_22795001 RAL-375 1741 chr3R 22843365 22843388 chr3R 22843446 22843469 10 79 5.0 6.0 5.5 1.5 104 chr3R 22843365 intergenic not near genes chr3R 22843417 intergenic not near genes chr3R 22843469 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-375 1742 chr3R 22860154 22860166 chr3R 22860246 22860258 5 92 3.5 2.5 3.0 1.2 104 chr3R 22860154 intergenic not near genes chr3R 22860206 intergenic not near genes chr3R 22860258 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-375 1743 chr3R 22880934 22880960 chr3R 22881072 22881098 7 138 3.5 2.0 2.8 1.8 164 chr3R 22880934 intergenic not near genes chr3R 22881016 intergenic not near genes chr3R 22881098 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-375 1744 chr3R 22881194 22881221 chr3R 22884900 22884926 Doc 7 3706 3.0 2.5 2.8 1.8 3732 chr3R 22881194 intergenic not near genes chr3R 22883060 intergenic not near genes chr3R 22884926 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-375 1745 chr3R 22913919 22913943 chr3R 22913996 22914022 6 78 1.0 1.0 1.0 3.0 103 chr3R 22913919 intron klg + chr3R 22913970 intron klg + chr3R 22914022 intron klg + chr3R_6_22910001 chr3R_22910001 RAL-375 1746 chr3R 23039035 23039040 chr3R 23039112 23039120 4 78 7.5 8.0 7.8 0.5 85 chr3R 23039035 intergenic not near genes chr3R 23039078 intergenic not near genes chr3R 23039120 intergenic not near genes chr3R_4_23035001 chr3R_23035001 RAL-375 1747 chr3R 23073653 23073687 chr3R 23073741 23073776 12 86 4.0 2.5 3.2 2.9 123 chr3R 23073653 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073776 intron CG13830 - chr3R_12_23070001 chr3R_23070001 RAL-375 1748 chr3R 23114165 23114198 chr3R 23114243 23114276 11 76 3.5 5.5 4.5 2.0 111 chr3R 23114165 3` UTR Rassf - chr3R 23114220 3` UTR Rassf - chr3R 23114276 3` UTR Rassf - chr3R_11_23110001 chr3R_23110001 RAL-375 1749 chr3R 23335437 23335466 chr3R 23335515 23335544 10 78 5.0 3.0 4.0 2.0 107 chr3R 23335437 intron pnt - chr3R 23335490 intron pnt - chr3R 23335544 intron pnt - chr3R_10_23335001 chr3R_23335001 RAL-375 1750 chr3R 23363673 23363704 chr3R 23363759 23363790 8 86 7.0 2.5 4.8 1.4 117 chr3R 23363673 intergenic CG4408 - chr3R 23363732 intergenic CG4408 - chr3R 23363790 intergenic CG4408 - chr3R_8_23360001 chr3R_23360001 RAL-375 1751 chr3R 23480158 23480196 chr3R 23480424 23480448 12 264 3.0 2.0 2.5 3.4 290 chr3R 23480158 intergenic not near genes chr3R 23480303 intergenic not near genes chr3R 23480448 intergenic not near genes chr3R_12_23480001 chr3R_23480001 RAL-375 1752 chr3R 23536952 23536977 chr3R 23537133 23537159 6 181 5.0 2.0 3.5 1.3 207 chr3R 23536952 intergenic CG10168 -,CG16732 - chr3R 23537056 exon CG10168 - chr3R 23537159 exon CG10168 - chr3R_6_23535001 chr3R_23535001 RAL-375 1753 chr3R 23548078 23548097 chr3R 23548383 23548401 4 301 3.5 8.0 5.8 0.6 323 chr3R 23548078 intergenic not near genes chr3R 23548240 intergenic not near genes chr3R 23548401 intergenic not near genes chr3R_4_23545001 chr3R_23545001 RAL-375 1754 chr3R 23558398 23558429 chr3R 23560179 23560210 Bari1 6 1781 1.5 3.5 2.5 1.7 1812 chr3R 23558398 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-375 1755 chr3R 23572755 23572782 chr3R 23572871 23572902 10 118 1.5 2.0 1.8 3.6 147 chr3R 23572755 intron beat-IV + chr3R 23572828 intron beat-IV + chr3R 23572902 intron beat-IV + chr3R_10_23570001 chr3R_23570001 RAL-375 1756 chr3R 23581587 23581621 chr3R 23581663 23581667 6 66 1.0 0.0 0.5 4.0 80 chr3R 23581587 intergenic not near genes chr3R 23581627 intergenic not near genes chr3R 23581667 intergenic not near genes chr3R_6_23580001 chr3R_23580001 RAL-375 1757 chr3R 23582799 23582823 chr3R 23582883 23582893 6 83 2.5 2.5 2.5 1.7 94 chr3R 23582799 intergenic not near genes chr3R 23582846 intergenic not near genes chr3R 23582893 intergenic not near genes chr3R_6_23580001 chr3R_23580001 RAL-375 1758 chr3R 23627550 23627642 chr3R 23627627 23627721 9 78 0.0 0.0 0.0 9.0 171 chr3R 23627550 intron CG31145 - chr3R 23627636 intron CG31145 - chr3R 23627721 intron CG31145 - chr3R_9_23625001 chr3R_23625001 RAL-375 1759 chr3R 23684695 23684724 chr3R 23685181 23685188 roo 4 480 2.5 2.5 2.5 1.1 493 chr3R 23684695 exon CG18754 + chr3R 23684942 intron CG18754 + chr3R 23685188 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-375 1760 chr3R 23724888 23724918 chr3R 23724972 23725002 9 84 4.5 1.5 3.0 2.2 114 chr3R 23724888 intron CG10365 + chr3R 23724945 intron CG10365 + chr3R 23725002 intron CG10365 + chr3R_9_23720001 chr3R_23720001 RAL-375 1761 chr3R 23835415 23835423 chr3R 23844565 23844573 roo 4 9150 6.0 0.5 3.2 1.0 9158 chr3R 23835415 intron CG34355 + chr3R 23839994 intron CG34355 + chr3R 23844573 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-375 1762 chr3R 23888082 23888116 chr3R 23888168 23888194 10 85 2.5 2.0 2.2 3.1 112 chr3R 23888082 intron Pli - chr3R 23888138 intron Pli - chr3R 23888194 intron Pli - chr3R_10_23885001 chr3R_23885001 RAL-375 1763 chr3R 23949043 23949068 chr3R 23949119 23949141 8 75 4.5 4.0 4.2 1.5 98 chr3R 23949043 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949141 intergenic not near genes chr3R_8_23945001 chr3R_23945001 RAL-375 1764 chr3R 24011668 24011679 chr3R 24011751 24011762 5 83 1.5 0.0 0.8 2.8 94 chr3R 24011668 intron KrT95D - chr3R 24011715 intron KrT95D - chr3R 24011762 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-375 1765 chr3R 24072083 24072109 chr3R 24072521 24072528 jockey 5 434 7.5 0.0 3.8 1.0 445 chr3R 24072083 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072528 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-375 1766 chr3R 24076916 24076938 chr3R 24078383 24078405 hobo 7 1467 5.5 6.0 5.8 1.0 1489 chr3R 24076916 intron 4EHP - chr3R 24077660 intron 4EHP - chr3R 24078405 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-375 1767 chr3R 24100457 24100485 chr3R 24100552 24100580 5 95 3.0 2.5 2.8 1.3 123 chr3R 24100457 intron 4EHP - chr3R 24100518 intron 4EHP - chr3R 24100580 intron 4EHP - chr3R_5_24100001 chr3R_24100001 RAL-375 1768 chr3R 24207216 24207246 chr3R 24212292 24212322 flea 15 5075 6.0 6.0 6.0 2.1 5106 chr3R 24207216 intron twin - chr3R 24209769 intron twin - chr3R 24212322 intron twin - chr3R_15_24205001 chr3R_24205001 RAL-375 1769 chr3R 21907534 21907535 chr3R 24389465 24389465 5 2481930 23.5 16.0 19.8 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-375 1770 chr3R 24431599 24431625 chr3R 24431678 24431704 11 79 3.0 1.5 2.2 3.4 105 chr3R 24431599 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431704 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-375 1771 chr3R 24434248 24434266 chr3R 24434326 24434344 5 78 3.0 2.0 2.5 1.4 96 chr3R 24434248 intron nAChRalpha1 - chr3R 24434296 intron nAChRalpha1 - chr3R 24434344 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-375 1772 chr3R 24464267 24464283 chr3R 24464532 24464548 8 263 1.5 3.0 2.2 2.5 281 chr3R 24464267 intergenic CR45649 - chr3R 24464408 intergenic CR45649 - chr3R 24464548 intergenic CR45649 - chr3R_8_24460001 chr3R_24460001 RAL-375 1773 chr3R 24493287 24493311 chr3R 24493517 24493540 BS 7 230 3.5 8.5 6.0 1.0 253 chr3R 24493287 intergenic not near genes chr3R 24493414 intergenic not near genes chr3R 24493540 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-375 1774 chr3R 24495290 24495320 chr3R 24495369 24495394 16 78 3.0 5.0 4.0 3.2 104 chr3R 24495290 intergenic not near genes chr3R 24495342 intergenic not near genes chr3R 24495394 intergenic not near genes chr3R_16_24495001 chr3R_24495001 RAL-375 1775 chr3R 24527804 24527830 chr3R 24527895 24527921 7 91 2.0 1.5 1.8 2.5 117 chr3R 24527804 intergenic CG6607 +,CG13618 + chr3R 24527862 intergenic CG6607 +,CG13618 + chr3R 24527921 intergenic CG6607 +,CG13618 + chr3R_7_24525001 chr3R_24525001 RAL-375 1776 chr3R 24548560 24548589 chr3R 24548644 24548673 19 84 0.5 2.0 1.2 8.6 113 chr3R 24548560 intron Esyt2 + chr3R 24548616 intron Esyt2 + chr3R 24548673 intron Esyt2 + chr3R_19_24545001 chr3R_24545001 RAL-375 1777 chr3R 24667627 24667633 chr3R 24667702 24667710 4 76 1.5 0.0 0.8 2.2 83 chr3R 24667627 intron slo + chr3R 24667668 intron slo + chr3R 24667710 intron slo + chr3R_4_24665001 chr3R_24665001 RAL-375 1778 chr3R 24691300 24691321 chr3R 24691400 24691421 4 100 3.0 4.0 3.5 0.9 121 chr3R 24691300 intron slo + chr3R 24691360 intron slo + chr3R 24691421 intron slo + chr3R_4_24690001 chr3R_24690001 RAL-375 1779 chr3R 24730095 24730121 chr3R 24732468 24732468 Doc 10 2374 2.0 0.0 1.0 5.0 2373 chr3R 24730095 intron tok + chr3R 24731282 intron tok + chr3R 24732468 intron tok + chr3R_10_24730001 chr3R_24730001 RAL-375 1780 chr3R 24797964 24797981 chr3R 24798048 24798065 10 84 0.5 11.0 5.8 1.5 101 chr3R 24797964 exon Ude - chr3R 24798014 exon Ude - chr3R 24798065 exon Ude - chr3R_10_24795001 chr3R_24795001 RAL-375 1781 chr3R 24842102 24842108 chr3R 24842188 24842189 4 85 7.5 5.0 6.2 0.6 87 chr3R 24842102 5` UTR Esp + chr3R 24842146 5` UTR Esp + chr3R 24842189 5` UTR Esp + chr3R_4_24840001 chr3R_24840001 RAL-375 1782 chr3R 24842115 24842132 chr3R 24842187 24842218 14 85 3.0 5.0 4.0 2.8 103 chr3R 24842115 5` UTR Esp + chr3R 24842166 5` UTR Esp + chr3R 24842218 5` UTR Esp + chr3R_14_24840001 chr3R_24840001 RAL-375 1783 chr3R 24845991 24846023 chr3R 24846081 24846113 11 89 2.0 2.5 2.2 3.4 122 chr3R 24845991 intron Esp + chr3R 24846052 intron Esp + chr3R 24846113 intron Esp + chr3R_11_24845001 chr3R_24845001 RAL-375 1784 chr3R 24893473 24893489 chr3R 24893547 24893569 7 79 3.5 1.5 2.5 2.0 96 chr3R 24893473 intron CG31121 - chr3R 24893521 intron CG31121 - chr3R 24893569 intron CG31121 - chr3R_7_24890001 chr3R_24890001 RAL-375 1785 chr3R 24912482 24912504 chr3R 24912564 24912586 9 82 3.0 2.5 2.8 2.4 104 chr3R 24912482 intergenic not near genes chr3R 24912534 intergenic CR44267 + chr3R 24912586 intergenic CR44267 + chr3R_9_24910001 chr3R_24910001 RAL-375 1786 chr3R 24927133 24927148 chr3R 24931924 24931939 Doc 6 4791 6.0 3.5 4.8 1.0 4806 chr3R 24927133 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931939 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-375 1787 chr3R 24973953 24973983 chr3R 24974029 24974059 15 75 5.5 5.5 5.5 2.3 106 chr3R 24973953 intergenic not near genes chr3R 24974006 intergenic not near genes chr3R 24974059 intergenic not near genes chr3R_15_24970001 chr3R_24970001 RAL-375 1788 chr3R 24974913 24974936 chr3R 24974991 24975015 8 78 5.5 6.5 6.0 1.1 102 chr3R 24974913 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975015 intergenic not near genes chr3R_8_24970001 chr3R_24970001 RAL-375 1789 chr3R 25004902 25004913 chr3R 25004985 25004996 7 83 6.5 3.5 5.0 1.2 94 chr3R 25004902 intron tnc + chr3R 25004949 intron tnc + chr3R 25004996 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-375 1790 chr3R 25072759 25072789 chr3R 25072851 25072881 7 92 4.0 0.5 2.2 2.2 122 chr3R 25072759 3` UTR CG9996 - chr3R 25072820 3` UTR CG9996 - chr3R 25072881 3` UTR CG9996 - chr3R_7_25070001 chr3R_25070001 RAL-375 1791 chr3R 25122284 25122317 chr3R 25122407 25122440 13 122 2.5 3.0 2.8 3.4 156 chr3R 25122284 intron,intron CG31108 -,CG31510 - chr3R 25122362 intron,intron CG31108 -,CG31510 - chr3R 25122440 intron,intron CG31108 -,CG31510 - chr3R_13_25120001 chr3R_25120001 RAL-375 1792 chr3R 25136397 25136423 chr3R 25136477 25136503 10 80 4.5 1.5 3.0 2.5 106 chr3R 25136397 3` UTR Bili + chr3R 25136450 3` UTR Bili + chr3R 25136503 3` UTR Bili + chr3R_10_25135001 chr3R_25135001 RAL-375 1793 chr3R 25235748 25235781 chr3R 25235902 25235935 6 154 2.5 1.5 2.0 2.0 187 chr3R 25235748 intergenic CG10420 - chr3R 25235842 intergenic CG10420 - chr3R 25235935 intergenic CG10420 - chr3R_6_25235001 chr3R_25235001 RAL-375 1794 chr3R 25277679 25277698 chr3R 25277776 25277794 7 97 0.0 4.0 2.0 2.3 115 chr3R 25277679 intergenic CG10513 - chr3R 25277736 intergenic not near genes chr3R 25277794 intergenic not near genes chr3R_7_25275001 chr3R_25275001 RAL-375 1795 chr3R 25368473 25368505 chr3R 25368591 25368623 8 115 1.5 0.0 0.8 4.4 150 chr3R 25368473 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368623 intron Fur1 - chr3R_8_25365001 chr3R_25365001 RAL-375 1796 chr3R 25454892 25454920 chr3R 25454982 25455007 5 89 2.5 1.0 1.8 1.8 115 chr3R 25454892 intron Fur1 - chr3R 25454950 intron Fur1 - chr3R 25455007 intron Fur1 - chr3R_5_25450001 chr3R_25450001 RAL-375 1797 chr3R 25512396 25512422 chr3R 25512474 25512501 8 77 3.0 4.0 3.5 1.8 105 chr3R 25512396 intergenic not near genes chr3R 25512448 intergenic not near genes chr3R 25512501 intergenic not near genes chr3R_8_25510001 chr3R_25510001 RAL-375 1798 chr3R 25658768 25658778 chr3R 25658846 25658857 4 79 5.5 2.5 4.0 0.8 89 chr3R 25658768 intron Tnks - chr3R 25658812 intron Tnks - chr3R 25658857 intron Tnks - chr3R_4_25655001 chr3R_25655001 RAL-375 1799 chr3R 25671242 25671274 chr3R 25671339 25671374 5 95 1.5 0.0 0.8 2.8 132 chr3R 25671242 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671374 intron Lgr3 + chr3R_5_25670001 chr3R_25670001 RAL-375 1800 chr3R 25689126 25689161 chr3R 25689234 25689269 12 108 2.5 3.5 3.0 3.0 143 chr3R 25689126 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689269 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-375 1801 chr3R 25720819 25720836 chr3R 25720904 25720921 4 85 0.0 4.0 2.0 1.3 102 chr3R 25720819 intron LpR2 - chr3R 25720870 intron LpR2 - chr3R 25720921 intron LpR2 - chr3R_4_25720001 chr3R_25720001 RAL-375 1802 chr3R 25725827 25725862 chr3R 25734987 25735022 roo 6 9160 1.5 3.5 2.5 1.7 9195 chr3R 25725827 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735022 intron LpR2 - chr3R_6_25730001 chr3R_25730001 RAL-375 1803 chr3R 25796380 25796396 chr3R 25796459 25796475 5 78 4.0 0.0 2.0 1.7 95 chr3R 25796380 intergenic CR43847 - chr3R 25796428 intergenic CR43847 - chr3R 25796475 intergenic CR43847 - chr3R_5_25795001 chr3R_25795001 RAL-375 1804 chr3R 25832692 25832721 chr3R 25841874 25841903 roo 6 9182 2.5 6.5 4.5 1.1 9211 chr3R 25832692 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841903 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-375 1805 chr3R 25843637 25843661 chr3R 25843767 25843791 6 130 1.5 2.5 2.0 2.0 154 chr3R 25843637 intergenic CR45653 + chr3R 25843714 intergenic CR45653 + chr3R 25843791 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-375 1806 chr3R 25928137 25928151 chr3R 25928241 25928259 5 108 5.0 3.5 4.2 1.0 122 chr3R 25928137 intron CCAP-R - chr3R 25928198 intron CCAP-R - chr3R 25928259 intron CCAP-R - chr3R_5_25925001 chr3R_25925001 RAL-375 1807 chr3R 25943286 25943317 chr3R 25943882 25943884 10 592 3.5 1.5 2.5 2.9 598 chr3R 25943286 intron CCAP-R - chr3R 25943585 intron CCAP-R - chr3R 25943884 intron CCAP-R - chr3R_10_25940001 chr3R_25940001 RAL-375 1808 chr3R 26063201 26063228 chr3R 26063295 26063324 7 94 0.5 0.0 0.2 5.8 123 chr3R 26063201 intergenic CG14551 - chr3R 26063262 intergenic CG14551 - chr3R 26063324 intergenic CG14551 - chr3R_7_26060001 chr3R_26060001 RAL-375 1809 chr3R 26122461 26122472 chr3R 26122537 26122546 5 76 9.5 2.0 5.8 0.7 85 chr3R 26122461 intron CG31324 + chr3R 26122504 intron CG31324 + chr3R 26122546 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-375 1810 chr3R 26235490 26235522 chr3R 26235572 26235587 10 79 2.0 3.5 2.8 2.6 97 chr3R 26235490 5` UTR CR42745 + chr3R 26235538 5` UTR CR42745 + chr3R 26235587 5` UTR CR42745 + chr3R_10_26235001 chr3R_26235001 RAL-375 1811 chr3R 26265817 26265848 chr3R 26265905 26265936 11 84 3.0 4.5 3.8 2.3 119 chr3R 26265817 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265936 intron CG6154 + chr3R_11_26265001 chr3R_26265001 RAL-375 1812 chr3R 26292114 26292141 chr3R 26292194 26292221 8 80 1.5 6.0 3.8 1.7 107 chr3R 26292114 intergenic not near genes chr3R 26292168 intergenic not near genes chr3R 26292221 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-375 1813 chr3R 26294716 26294750 chr3R 26294794 26294828 10 78 2.5 3.5 3.0 2.5 112 chr3R 26294716 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294828 intergenic not near genes chr3R_10_26290001 chr3R_26290001 RAL-375 1814 chr3R 26325363 26325379 chr3R 26325450 26325466 5 87 4.5 0.0 2.2 1.6 103 chr3R 26325363 intron CG33970 + chr3R 26325414 intron CG33970 + chr3R 26325466 intron CG33970 + chr3R_5_26325001 chr3R_26325001 RAL-375 1815 chr3R 26376338 26376358 chr3R 26385483 26385515 roo 7 9157 2.0 1.5 1.8 2.5 9177 chr3R 26376338 intergenic not near genes chr3R 26380926 intergenic not near genes chr3R 26385515 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-375 1816 chr3R 26510531 26510534 chr3R 26519576 26519589 roo 4 9052 2.5 4.5 3.5 0.9 9058 chr3R 26510531 intron plum - chr3R 26515060 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-375 1817 chr3R 26558328 26558361 chr3R 26565638 26565673 Stalker4 7 7307 3.5 3.5 3.5 1.6 7345 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565673 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-375 1818 chr3R 26604456 26604480 chr3R 26604537 26604555 10 78 2.5 2.0 2.2 3.1 99 chr3R 26604456 intergenic scrib + chr3R 26604506 intergenic scrib + chr3R 26604555 intergenic not near genes chr3R_10_26600001 chr3R_26600001 RAL-375 1819 chr3R 26607748 26607774 chr3R 26607823 26607849 9 76 3.5 3.5 3.5 2.0 101 chr3R 26607748 5` UTR CR44951 + chr3R 26607798 5` UTR CR44951 + chr3R 26607849 5` UTR CR44951 + chr3R_9_26605001 chr3R_26605001 RAL-375 1820 chr3R 26642749 26642757 chr3R 26643125 26643151 jockey 4 389 3.0 1.5 2.2 1.2 402 chr3R 26642749 intergenic not near genes chr3R 26642950 intergenic not near genes chr3R 26643151 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-375 1821 chr3R 26770241 26770274 chr3R 26770318 26770351 17 76 3.5 2.0 2.8 4.5 110 chr3R 26770241 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_17_26770001 chr3R_26770001 RAL-375 1822 chr3R 26810551 26810570 chr3R 26811036 26811055 roo 5 485 5.0 4.0 4.5 0.9 504 chr3R 26810551 intron Tl + chr3R 26810803 intron Tl + chr3R 26811055 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-375 1823 chr3R 26870792 26870822 chr3R 26870870 26870900 14 78 3.0 2.5 2.8 3.7 108 chr3R 26870792 intron BM-40-SPARC - chr3R 26870846 intron BM-40-SPARC - chr3R 26870900 intron BM-40-SPARC - chr3R_14_26870001 chr3R_26870001 RAL-375 1824 chr3R 26925262 26925288 chr3R 26925675 26925699 7 413 5.0 2.5 3.8 1.5 437 chr3R 26925262 intron sda + chr3R 26925480 intron sda + chr3R 26925699 intron sda + chr3R_7_26925001 chr3R_26925001 RAL-375 1825 chr3R 26927395 26927424 chr3R 26927556 26927583 9 158 2.0 1.5 1.8 3.2 188 chr3R 26927395 intron sda + chr3R 26927489 intron sda + chr3R 26927583 intron sda + chr3R_9_26925001 chr3R_26925001 RAL-375 1826 chr3R 27007403 27007434 chr3R 27016538 27016567 roo 9 9135 0.5 3.5 2.0 3.0 9164 chr3R 27007403 intron RYa-R + chr3R 27011985 intron RYa-R + chr3R 27016567 intron RYa-R + chr3R_9_27010001 chr3R_27010001 RAL-375 1827 chr3R 27027687 27027703 chr3R 27027769 27027784 5 82 2.0 2.0 2.0 1.7 97 chr3R 27027687 intron RYa-R + chr3R 27027736 intron RYa-R + chr3R 27027784 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-375 1828 chr3R 27028722 27028756 chr3R 27028800 27028835 8 79 1.5 1.5 1.5 3.2 113 chr3R 27028722 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_8_27025001 chr3R_27025001 RAL-375 1829 chr3R 27030221 27030251 chr3R 27030350 27030379 11 128 2.5 0.0 1.2 5.0 158 chr3R 27030221 intron RYa-R + chr3R 27030300 intron RYa-R + chr3R 27030379 intron RYa-R + chr3R_11_27030001 chr3R_27030001 RAL-375 1830 chr3R 27133520 27133545 chr3R 27133637 27133639 5 111 3.0 3.0 3.0 1.2 119 chr3R 27133520 intron CG6051 - chr3R 27133580 intron CG6051 - chr3R 27133639 intron CG6051 - chr3R_5_27130001 chr3R_27130001 RAL-375 1831 chr3R 27140513 27140540 chr3R 27148123 27148129 412 16 7608 4.0 5.5 4.8 2.8 7616 chr3R 27140513 intron CG6051 - chr3R 27144321 intron CG6051 - chr3R 27148129 intron CG6051 - chr3R_16_27140001 chr3R_27140001 RAL-375 1832 chr3R 27219854 27219884 chr3R 27219954 27219979 5 99 2.0 2.0 2.0 1.7 125 chr3R 27219854 intergenic not near genes chr3R 27219916 intergenic not near genes chr3R 27219979 intergenic not near genes chr3R_5_27215001 chr3R_27215001 RAL-375 1833 chr3R 27292291 27292304 chr3R 27292392 27292415 7 109 2.0 2.0 2.0 2.3 124 chr3R 27292291 intergenic CG3348 - chr3R 27292353 intergenic CG3348 - chr3R 27292415 intergenic CG3348 - chr3R_7_27290001 chr3R_27290001 RAL-375 1834 chr3R 27315993 27316004 chr3R 27316069 27316080 5 76 4.5 1.5 3.0 1.2 87 chr3R 27315993 intron CG3339 - chr3R 27316036 intron CG3339 - chr3R 27316080 intron CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-375 1835 chr3R 27329477 27329494 chr3R 27329554 27329571 5 77 3.5 1.0 2.2 1.6 94 chr3R 27329477 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329571 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-375 1836 chr3R 27342793 27342824 chr3R 27351374 27351405 Tirant 14 8581 0.5 4.5 2.5 4.0 8612 chr3R 27342793 intron CG42534 + chr3R 27347099 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_14_27345001 chr3R_27345001 RAL-375 1837 chr3R 27379916 27379943 chr3R 27379999 27380026 4 82 0.5 6.5 3.5 0.9 110 chr3R 27379916 3` UTR side - chr3R 27379971 3` UTR side - chr3R 27380026 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-375 1838 chr3R 27517437 27517461 chr3R 27517542 27517566 7 103 2.5 4.5 3.5 1.6 129 chr3R 27517437 intergenic CG13972 - chr3R 27517502 intergenic CG13972 - chr3R 27517566 intergenic CG13972 - chr3R_7_27515001 chr3R_27515001 RAL-375 1839 chr3R 27521157 27521183 chr3R 27530366 27530392 roo 7 9209 1.5 4.0 2.8 1.8 9235 chr3R 27521157 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530392 intron CG12885 + chr3R_7_27525001 chr3R_27525001 RAL-375 1840 chr3R 27574103 27574136 chr3R 27574500 27574535 12 396 2.5 1.0 1.8 4.3 432 chr3R 27574103 intron wdb - chr3R 27574319 intron wdb - chr3R 27574535 intron wdb - chr3R_12_27570001 chr3R_27570001 RAL-375 1841 chr3R 27648589 27648868 chr3R 27648671 27648943 23 76 2.0 0.0 1.0 11.5 354 chr3R 27648589 intron tau - chr3R 27648766 intron tau - chr3R 27648943 intron tau - chr3R_23_27645001 chr3R_27645001 RAL-375 1842 chr3R 27686803 27686829 chr3R 27686893 27686909 5 88 3.5 2.5 3.0 1.2 106 chr3R 27686803 intron,intron CG31055 -,CG12880 + chr3R 27686856 intron,intron CG31055 -,CG12880 + chr3R 27686909 intron,intron CG31055 -,CG12880 + chr3R_5_27685001 chr3R_27685001 RAL-375 1843 chr3R 27706778 27706809 chr3R 27706854 27706885 8 76 2.5 1.0 1.8 2.9 107 chr3R 27706778 intergenic CG12428 -,CG12877 + chr3R 27706832 intergenic CG12428 -,CG12877 + chr3R 27706885 intergenic CG12428 -,CG12877 + chr3R_8_27705001 chr3R_27705001 RAL-375 1844 chr3R 27725564 27725594 chr3R 27731006 27731036 I-element 9 5442 3.0 3.0 3.0 2.2 5472 chr3R 27725564 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731036 intergenic not near genes chr3R_9_27725001 chr3R_27725001 RAL-375 1845 chr3R 27731197 27731214 chr3R 27731278 27731289 4 80 2.5 5.0 3.8 0.8 92 chr3R 27731197 intergenic not near genes chr3R 27731243 intergenic not near genes chr3R 27731289 intergenic not near genes chr3R_4_27730001 chr3R_27730001 RAL-375 1846 chr3R 27779273 27779287 chr3R 27779350 27779364 8 76 7.5 7.0 7.2 1.0 91 chr3R 27779273 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779364 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-375 1847 chr3R 27799939 27799960 chr3R 27800021 27800042 8 81 3.0 2.0 2.5 2.3 103 chr3R 27799939 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800042 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-375 1848 chr3R 27800694 27800718 chr3R 27800789 27800813 11 95 2.0 3.0 2.5 3.1 119 chr3R 27800694 intron CG34353 - chr3R 27800754 intron CG34353 - chr3R 27800813 intron CG34353 - chr3R_11_27800001 chr3R_27800001 RAL-375 1849 chr3R 27813819 27813843 chr3R 27813923 27813947 8 102 3.5 0.0 1.8 2.9 128 chr3R 27813819 intron CG34353 - chr3R 27813883 intron CG34353 - chr3R 27813947 intron CG34353 - chr3R_8_27810001 chr3R_27810001 RAL-375 1850 chr3R 27829899 27829931 chr3R 27829978 27829994 10 76 2.5 0.0 1.2 4.5 95 chr3R 27829899 intron CG34353 - chr3R 27829946 intron CG34353 - chr3R 27829994 intron CG34353 - chr3R_10_27825001 chr3R_27825001 RAL-375 1851 chr3R 27841109 27841120 chr3R 27841188 27841201 4 80 5.0 5.5 5.2 0.6 92 chr3R 27841109 intron CG34353 - chr3R 27841155 intron CG34353 - chr3R 27841201 intron CG34353 - chr3R_4_27840001 chr3R_27840001 RAL-375 1852 chr3R 27856763 27856793 chr3R 27858244 27858276 hopper2 8 1482 2.5 5.0 3.8 1.7 1513 chr3R 27856763 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_8_27855001 chr3R_27855001 RAL-375 1853 chr3R 27875701 27875733 chr3R 27882755 27882788 297 9 7055 3.0 4.5 3.8 1.9 7087 chr3R 27875701 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-375 1854 chr3R 27891466 27891483 chr3R 27891536 27891570 4 83 1.0 3.0 2.0 1.3 104 chr3R 27891466 intron CG34353 - chr3R 27891518 intron CG34353 - chr3R 27891570 intron CG34353 - chr3R_4_27890001 chr3R_27890001 RAL-375 1855 chr3R 28035489 28035517 chr3R 28035566 28035594 6 75 0.5 2.0 1.2 2.7 105 chr3R 28035489 intron CG34362 + chr3R 28035542 intron CG34362 + chr3R 28035594 intron CG34362 + chr3R_6_28035001 chr3R_28035001 RAL-375 1856 chr3R 28054441 28054475 chr3R 28054517 28054551 14 74 2.0 2.0 2.0 4.7 110 chr3R 28054441 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054551 intron CG34362 + chr3R_14_28050001 chr3R_28050001 RAL-375 1857 chr3R 28068493 28068522 chr3R 28073935 28073964 I-element 6 5442 2.5 0.5 1.5 2.4 5471 chr3R 28068493 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073964 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-375 1858 chr3R 28078326 28078356 chr3R 28078445 28078475 6 116 3.0 2.0 2.5 1.7 149 chr3R 28078326 intron CG34362 + chr3R 28078400 intron CG34362 + chr3R 28078475 intron CG34362 + chr3R_6_28075001 chr3R_28075001 RAL-375 1859 chr3R 28126729 28126759 chr3R 28126814 28126845 6 86 4.0 1.5 2.8 1.6 116 chr3R 28126729 intergenic not near genes chr3R 28126787 intergenic not near genes chr3R 28126845 intergenic not near genes chr3R_6_28125001 chr3R_28125001 RAL-375 1860 chr3R 28131427 28131459 chr3R 28131609 28131641 6 182 1.5 0.5 1.0 3.0 214 chr3R 28131427 intergenic not near genes chr3R 28131534 intergenic not near genes chr3R 28131641 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-375 1861 chr3R 28173676 28173704 chr3R 28181106 28181134 mdg1 5 7430 0.0 2.0 1.0 2.5 7458 chr3R 28173676 intron CG34354 + chr3R 28177405 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-375 1862 chr3R 28253337 28253372 chr3R 28255847 28255881 jockey 6 2510 3.5 5.5 4.5 1.1 2544 chr3R 28253337 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-375 1863 chr3R 28302101 28302128 chr3R 28302540 28302567 jockey 8 439 8.5 2.5 5.5 1.2 466 chr3R 28302101 intergenic not near genes chr3R 28302334 intergenic not near genes chr3R 28302567 intergenic not near genes chr3R_8_28300001 chr3R_28300001 RAL-375 1864 chr3R 28390116 28390145 chr3R 28390194 28390223 10 76 2.5 3.0 2.8 2.6 107 chr3R 28390116 intergenic not near genes chr3R 28390170 intergenic not near genes chr3R 28390223 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-375 1865 chr3R 28393698 28393724 chr3R 28393798 28393824 9 100 2.5 3.0 2.8 2.4 126 chr3R 28393698 intergenic not near genes chr3R 28393761 intergenic not near genes chr3R 28393824 intergenic not near genes chr3R_9_28390001 chr3R_28390001 RAL-375 1866 chr3R 28407704 28407738 chr3R 28407790 28407822 11 85 3.5 3.5 3.5 2.4 118 chr3R 28407704 intergenic not near genes chr3R 28407763 intergenic not near genes chr3R 28407822 intergenic not near genes chr3R_11_28405001 chr3R_28405001 RAL-375 1867 chr3R 28478985 28479168 chr3R 28479081 28479251 19 92 2.5 1.0 1.8 6.8 266 chr3R 28478985 intergenic not near genes chr3R 28479118 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_19_28475001 chr3R_28475001 RAL-375 1868 chr3R 28554706 28554732 chr3R 28554789 28554822 7 87 1.5 2.0 1.8 2.5 116 chr3R 28554706 intergenic not near genes chr3R 28554764 intergenic not near genes chr3R 28554822 intergenic not near genes chr3R_7_28550001 chr3R_28550001 RAL-375 1869 chr3R 28565958 28565979 chr3R 28566034 28566049 8 76 3.0 5.0 4.0 1.6 91 chr3R 28565958 intergenic not near genes chr3R 28566004 intergenic not near genes chr3R 28566049 intergenic not near genes chr3R_8_28565001 chr3R_28565001 RAL-375 1870 chr3R 28633190 28633222 chr3R 28633270 28633302 14 79 2.5 2.5 2.5 4.0 112 chr3R 28633190 intron CG10011 - chr3R 28633246 intron CG10011 - chr3R 28633302 intron CG10011 - chr3R_14_28630001 chr3R_28630001 RAL-375 1871 chr3R 28668803 28668833 chr3R 28668956 28668986 14 154 24.5 13.0 18.8 0.7 183 chr3R 28668803 intergenic CG33346 + chr3R 28668894 intergenic CG33346 + chr3R 28668986 intergenic CG33346 + chr3R_14_28665001 chr3R_28665001 RAL-375 1872 chr3R 28758286 28758302 chr3R 28763903 28763919 roo 4 5617 3.0 0.5 1.8 1.4 5633 chr3R 28758286 intergenic aqrs - chr3R 28761102 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-375 1873 chr3R 28771826 28771848 chr3R 28772048 28772070 5 222 4.0 1.5 2.8 1.3 244 chr3R 28771826 intergenic not near genes chr3R 28771948 intergenic not near genes chr3R 28772070 intergenic not near genes chr3R_5_28770001 chr3R_28770001 RAL-375 1874 chr3R 28792872 28792899 chr3R 28797966 28797994 jockey 7 5095 3.0 2.0 2.5 2.0 5122 chr3R 28792872 intergenic not near genes chr3R 28795433 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-375 1875 chr3R 28830886 28830916 chr3R 28830964 28830994 11 78 4.5 2.5 3.5 2.4 108 chr3R 28830886 intron WASp - chr3R 28830940 intron WASp - chr3R 28830994 intron WASp - chr3R_11_28830001 chr3R_28830001 RAL-375 1876 chr3R 21907534 21907536 chr3R 28831799 28831803 145 6924266 23.5 17.5 20.5 6.7 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_145_25365001 chr3R_25365001 RAL-375 1877 chr3R 28930044 28930070 chr3R 28930134 28930161 4 90 1.0 2.5 1.8 1.4 117 chr3R 28930044 intron CG14521 - chr3R 28930102 intron CG14521 - chr3R 28930161 intron CG14521 - chr3R_4_28930001 chr3R_28930001 RAL-375 1878 chr3R 29009955 29009981 chr3R 29010061 29010087 10 106 3.0 4.5 3.8 2.1 132 chr3R 29009955 intron wat - chr3R 29010021 intron wat - chr3R 29010087 intron wat - chr3R_10_29010001 chr3R_29010001 RAL-375 1879 chr3R 21907534 21907535 chr3R 29013340 29013340 5 7105805 23.5 11.0 17.2 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-375 1880 chr3R 29046488 29046502 chr3R 29046568 29046583 4 79 2.5 0.0 1.2 1.8 95 chr3R 29046488 3` UTR Pkc98E + chr3R 29046536 3` UTR Pkc98E + chr3R 29046583 3` UTR Pkc98E + chr3R_4_29045001 chr3R_29045001 RAL-375 1881 chr3R 29053735 29053767 chr3R 29054245 29054277 7 510 2.5 3.0 2.8 1.8 542 chr3R 29053735 exon CG11842 + chr3R 29054006 intergenic CG11842 +,CG11843 + chr3R 29054277 intergenic CG11843 +,CG11842 + chr3R_7_29050001 chr3R_29050001 RAL-375 1882 chr3R 29059369 29059397 chr3R 29059464 29059492 8 93 5.0 6.0 5.5 1.2 123 chr3R 29059369 3` UTR Cul5 - chr3R 29059430 3` UTR Cul5 - chr3R 29059492 3` UTR Cul5 - chr3R_8_29055001 chr3R_29055001 RAL-375 1883 chr3R 29070055 29070079 chr3R 29070136 29070160 5 81 5.0 4.0 4.5 0.9 105 chr3R 29070055 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070160 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-375 1884 chr3R 29128511 29128518 chr3R 29128601 29128608 4 90 0.0 5.5 2.8 1.1 97 chr3R 29128511 intergenic dgt6 -,CG11880 + chr3R 29128560 intergenic dgt6 -,CG11880 + chr3R 29128608 3` UTR dgt6 - chr3R_4_29125001 chr3R_29125001 RAL-375 1885 chr3R 29164593 29164626 chr3R 29164672 29164697 13 78 5.5 4.0 4.8 2.2 104 chr3R 29164593 3` UTR CG11897 + chr3R 29164645 3` UTR CG11897 + chr3R 29164697 3` UTR CG11897 + chr3R_13_29160001 chr3R_29160001 RAL-375 1886 chr3R 29213061 29213093 chr3R 29213144 29213158 12 81 5.0 5.0 5.0 2.0 97 chr3R 29213061 intergenic not near genes chr3R 29213110 intergenic not near genes chr3R 29213158 intergenic not near genes chr3R_12_29210001 chr3R_29210001 RAL-375 1887 chr3R 29237267 29237275 chr3R 29239272 29239291 8 2017 4.5 5.0 4.8 1.4 2024 chr3R 29237267 exon CG11951 - chr3R 29238279 intron CG11951 - chr3R 29239291 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-375 1888 chr3R 29239239 29239250 chr3R 29245527 29245541 4 6290 5.0 20.5 12.8 0.3 6302 chr3R 29239239 exon CG31427 - chr3R 29242390 exon CG31445 - chr3R 29245541 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-375 1889 chr3R 29240310 29240344 chr3R 29240394 29240428 15 84 3.5 1.0 2.2 4.7 118 chr3R 29240310 5` UTR CG31427 - chr3R 29240369 intergenic CG31427 -,CG31445 - chr3R 29240428 intergenic CG31427 -,CG31445 - chr3R_15_29240001 chr3R_29240001 RAL-375 1890 chr3R 29244687 29244717 chr3R 29244766 29244796 11 79 4.0 4.5 4.2 2.1 109 chr3R 29244687 5` UTR CG31445 - chr3R 29244742 5` UTR CG31445 - chr3R 29244796 5` UTR CG31445 - chr3R_11_29240001 chr3R_29240001 RAL-375 1891 chr3R 29256269 29256299 chr3R 29256349 29256379 14 79 2.5 2.5 2.5 4.0 110 chr3R 29256269 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256379 intergenic CG45544 + chr3R_14_29255001 chr3R_29255001 RAL-375 1892 chr3R 29319828 29319860 chr3R 29320147 29320157 jockey 4 313 3.5 5.0 4.2 0.8 329 chr3R 29319828 intergenic Cnx99A - chr3R 29319992 intergenic Cnx99A - chr3R 29320157 intergenic not near genes chr3R_4_29315001 chr3R_29315001 RAL-375 1893 chr3R 29356065 29356078 chr3R 29356146 29356159 5 81 0.5 3.5 2.0 1.7 94 chr3R 29356065 intergenic CR45547 - chr3R 29356112 intergenic CR45547 - chr3R 29356159 3` UTR CR45547 - chr3R_5_29355001 chr3R_29355001 RAL-375 1894 chr3R 29360206 29360224 chr3R 29360289 29360307 6 83 4.5 4.5 4.5 1.1 101 chr3R 29360206 intergenic not near genes chr3R 29360256 intergenic not near genes chr3R 29360307 intergenic not near genes chr3R_6_29360001 chr3R_29360001 RAL-375 1895 chr3R 29387793 29387798 chr3R 29387876 29387881 4 83 1.0 5.5 3.2 1.0 88 chr3R 29387793 intron Ptp99A + chr3R 29387837 intron Ptp99A + chr3R 29387881 intron Ptp99A + chr3R_4_29385001 chr3R_29385001 RAL-375 1896 chr3R 29390525 29390551 chr3R 29390700 29390726 6 173 3.0 2.0 2.5 1.7 201 chr3R 29390525 intron Ptp99A + chr3R 29390626 intron Ptp99A + chr3R 29390726 intron Ptp99A + chr3R_6_29390001 chr3R_29390001 RAL-375 1897 chr3R 29402984 29403007 chr3R 29403079 29403102 8 95 2.5 1.5 2.0 2.7 118 chr3R 29402984 intron Ptp99A + chr3R 29403043 intron Ptp99A + chr3R 29403102 intron Ptp99A + chr3R_8_29400001 chr3R_29400001 RAL-375 1898 chr3R 29406628 29406645 chr3R 29407899 29407931 jockey 6 1280 4.0 5.0 4.5 1.1 1303 chr3R 29406628 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-375 1899 chr3R 29581536 29581543 chr3R 29581617 29581624 4 81 5.0 0.0 2.5 1.1 88 chr3R 29581536 intergenic not near genes chr3R 29581580 intergenic not near genes chr3R 29581624 intergenic not near genes chr3R_4_29580001 chr3R_29580001 RAL-375 1900 chr3R 29581547 29581564 chr3R 29581615 29581643 7 78 1.5 0.0 0.8 3.9 96 chr3R 29581547 intergenic not near genes chr3R 29581595 intergenic not near genes chr3R 29581643 intergenic not near genes chr3R_7_29580001 chr3R_29580001 RAL-375 1901 chr3R 29609171 29609197 chr3R 29609260 29609284 6 89 4.5 3.5 4.0 1.2 113 chr3R 29609171 intron alph + chr3R 29609228 intron alph + chr3R 29609284 intron alph + chr3R_6_29605001 chr3R_29605001 RAL-375 1902 chr3R 29642519 29642537 chr3R 29642728 29642746 7 209 0.0 4.5 2.2 2.2 227 chr3R 29642519 intron Dop1R2 - chr3R 29642632 intron Dop1R2 - chr3R 29642746 intron Dop1R2 - chr3R_7_29640001 chr3R_29640001 RAL-375 1903 chr3R 29655653 29655672 chr3R 29655730 29655751 5 79 4.5 4.0 4.2 1.0 98 chr3R 29655653 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655751 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-375 1904 chr3R 29738262 29738299 chr3R 29739729 29739766 hobo 8 1467 1.5 1.5 1.5 3.2 1504 chr3R 29738262 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-375 1905 chr3R 29882019 29882050 chr3R 29891176 29891207 roo 11 9156 3.0 5.0 4.0 2.2 9188 chr3R 29882019 intron CG31038 + chr3R 29886613 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-375 1906 chr3R 29950582 29950593 chr3R 29950655 29950669 5 74 5.0 4.5 4.8 0.9 87 chr3R 29950582 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950669 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-375 1907 chr3R 29968761 29968794 chr3R 29968945 29968978 14 184 2.5 3.5 3.0 3.5 217 chr3R 29968761 intron TkR99D - chr3R 29968870 intron TkR99D - chr3R 29968978 intron TkR99D - chr3R_14_29965001 chr3R_29965001 RAL-375 1908 chr3R 30032162 30032175 chr3R 30032240 30032254 4 78 4.5 3.0 3.8 0.8 92 chr3R 30032162 intron Axn + chr3R 30032208 intron Axn + chr3R 30032254 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-375 1909 chr3R 30069984 30070012 chr3R 30070087 30070115 11 102 4.0 3.5 3.8 2.3 131 chr3R 30069984 intron sima + chr3R 30070050 intron sima + chr3R 30070115 intron sima + chr3R_11_30070001 chr3R_30070001 RAL-375 1910 chr3R 30084851 30084874 chr3R 30086317 30086341 hobo 9 1466 5.0 3.0 4.0 1.8 1490 chr3R 30084851 intron sima + chr3R 30085596 intron sima + chr3R 30086341 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-375 1911 chr3R 30088615 30088623 chr3R 30088701 30088709 6 86 0.0 0.5 0.2 5.0 94 chr3R 30088615 intron sima + chr3R 30088662 intron sima + chr3R 30088709 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-375 1912 chr3R 30177743 30177771 chr3R 30177860 30177888 5 117 1.5 1.0 1.2 2.3 145 chr3R 30177743 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177888 5` UTR CG15530 + chr3R_5_30175001 chr3R_30175001 RAL-375 1913 chr3R 30238764 30238779 chr3R 30239927 30239942 1360 4 1163 3.5 0.0 1.8 1.4 1178 chr3R 30238764 intergenic not near genes chr3R 30239353 intergenic not near genes chr3R 30239942 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-375 1914 chr3R 30330490 30330525 chr3R 30330570 30330603 11 78 3.0 2.5 2.8 2.9 113 chr3R 30330490 intron hdc + chr3R 30330546 intron hdc + chr3R 30330603 intron hdc + chr3R_11_30330001 chr3R_30330001 RAL-375 1915 chr3R 30354727 30354752 chr3R 30354811 30354813 8 81 4.0 2.0 3.0 2.0 86 chr3R 30354727 intron hdc + chr3R 30354770 intron hdc + chr3R 30354813 intron hdc + chr3R_8_30350001 chr3R_30350001 RAL-375 1916 chr3R 30407007 30407039 chr3R 30407088 30407120 11 79 4.0 3.5 3.8 2.3 113 chr3R 30407007 intergenic not near genes chr3R 30407064 intergenic not near genes chr3R 30407120 intergenic not near genes chr3R_11_30405001 chr3R_30405001 RAL-375 1917 chr3R 30480472 30480511 chr3R 30482940 30482979 jockey 10 2467 4.0 3.5 3.8 2.1 2507 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-375 1918 chr3R 30486892 30486898 chr3R 30488975 30488981 4 2083 2.0 1.0 1.5 1.6 2089 chr3R 30486892 intergenic Jon99Fii - chr3R 30487936 intergenic Jon99Fii - chr3R 30488981 5` UTR Jon99Fi + chr3R_4_30485001 chr3R_30485001 RAL-375 1919 chr3R 30498406 30498435 chr3R 30498606 30498635 7 200 0.0 2.5 1.2 3.2 229 chr3R 30498406 intron PH4alphaNE1 - chr3R 30498520 intron PH4alphaNE1 - chr3R 30498635 intron PH4alphaNE1 - chr3R_7_30495001 chr3R_30495001 RAL-375 1920 chr3R 30539712 30539736 chr3R 30540357 30540381 17 645 0.0 3.5 1.8 6.1 669 chr3R 30539712 intron tmod + chr3R 30540046 intron tmod + chr3R 30540381 intron tmod + chr3R_17_30540001 chr3R_30540001 RAL-375 1921 chr3R 30545369 30545393 chr3R 30545623 30545647 12 255 18.0 16.5 17.2 0.7 278 chr3R 30545369 intron tmod + chr3R 30545508 intron tmod + chr3R 30545647 intron tmod + chr3R_12_30545001 chr3R_30545001 RAL-375 1922 chr3R 30627602 30627633 chr3R 30627682 30627709 10 78 3.0 4.5 3.8 2.1 107 chr3R 30627602 3` UTR CG2267 - chr3R 30627656 exon CG2267 - chr3R 30627709 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-375 1923 chr3R 30679520 30679552 chr3R 30686989 30687021 blood 14 7469 3.0 2.5 2.8 3.7 7501 chr3R 30679520 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_14_30680001 chr3R_30680001 RAL-375 1924 chr3R 30737959 30737977 chr3R 30738042 30738072 9 92 3.0 0.5 1.8 3.2 113 chr3R 30737959 intergenic not near genes chr3R 30738016 intergenic not near genes chr3R 30738072 intergenic not near genes chr3R_9_30735001 chr3R_30735001 RAL-375 1925 chr3R 30747550 30747578 chr3R 30747626 30747654 6 75 3.5 3.0 3.2 1.4 104 chr3R 30747550 intergenic CR43238 - chr3R 30747602 intergenic CR43238 - chr3R 30747654 intergenic CR43238 - chr3R_6_30745001 chr3R_30745001 RAL-375 1926 chr3R 30818815 30818835 chr3R 30820380 30820400 1360 7 1565 3.0 5.0 4.0 1.4 1585 chr3R 30818815 intron cindr + chr3R 30819608 intron cindr + chr3R 30820400 intron cindr + chr3R_7_30815001 chr3R_30815001 RAL-375 1927 chr3R 30850241 30850269 chr3R 30850333 30850361 12 92 4.0 3.5 3.8 2.5 120 chr3R 30850241 intergenic not near genes chr3R 30850301 intergenic not near genes chr3R 30850361 intergenic not near genes chr3R_12_30850001 chr3R_30850001 RAL-375 1928 chr3R 30888921 30888943 chr3R 30893448 30893470 9 4528 29.5 32.0 30.8 0.3 4549 chr3R 30888921 exon Sap-r - chr3R 30891196 intergenic not near genes chr3R 30893470 intergenic not near genes chr3R_9_30890001 chr3R_30890001 RAL-375 1929 chr3R 30900530 30900692 chr3R 30900608 30900907 12 102 3.5 5.5 4.5 2.2 377 chr3R 30900530 3` UTR Cyp4c3 + chr3R 30900718 exon CG33483 - chr3R 30900907 intron CG33483 - chr3R_12_30900001 chr3R_30900001 RAL-375 1930 chr3R 30973136 30973161 chr3R 30973296 30973322 4 161 2.0 2.0 2.0 1.3 186 chr3R 30973136 intron 5-HT7 - chr3R 30973229 intron 5-HT7 - chr3R 30973322 intron 5-HT7 - chr3R_4_30970001 chr3R_30970001 RAL-375 1931 chr3R 30981966 30981980 chr3R 30982186 30982212 8 231 2.5 3.0 2.8 2.1 246 chr3R 30981966 intron 5-HT7 - chr3R 30982089 intron 5-HT7 - chr3R 30982212 intron 5-HT7 - chr3R_8_30980001 chr3R_30980001 RAL-375 1932 chr3R 31042109 31042142 chr3R 31042196 31042227 8 86 5.5 3.5 4.5 1.5 118 chr3R 31042109 intron CanA1 + chr3R 31042168 intron CanA1 + chr3R 31042227 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-375 1933 chr3R 31074229 31074259 chr3R 31081827 31081856 springer 4 7598 5.0 5.0 5.0 0.7 7627 chr3R 31074229 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081856 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-375 1934 chr3R 31279371 31279407 chr3R 31285562 31285598 diver 7 6187 2.0 1.5 1.8 2.5 6227 chr3R 31279371 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-375 1935 chr3R 31321568 31321599 chr3R 31322237 31322264 7 668 3.5 4.0 3.8 1.5 696 chr3R 31321568 intron CG34347 + chr3R 31321916 intron CG34347 + chr3R 31322264 intron CG34347 + chr3R_7_31320001 chr3R_31320001 RAL-375 1936 chr3R 31346725 31346747 chr3R 31346804 31346823 9 78 4.0 4.0 4.0 1.8 98 chr3R 31346725 intron CG34347 + chr3R 31346774 intron CG34347 + chr3R 31346823 intron CG34347 + chr3R_9_31345001 chr3R_31345001 RAL-375 1937 chr3R 31413089 31413119 chr3R 31418289 31418304 copia 13 5198 3.5 5.5 4.5 2.4 5215 chr3R 31413089 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418304 intron Gprk2 + chr3R_13_31415001 chr3R_31415001 RAL-375 1938 chr3R 31426881 31426913 chr3R 31426973 31427005 9 92 2.0 5.0 3.5 2.0 124 chr3R 31426881 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31427005 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-375 1939 chr3R 31435366 31435371 chr3R 31435518 31435523 5 152 9.0 3.5 6.2 0.7 157 chr3R 31435366 intron Gprk2 + chr3R 31435444 intron Gprk2 + chr3R 31435523 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-375 1940 chr3R 31435377 31435391 chr3R 31435517 31435543 10 150 4.0 3.0 3.5 2.2 166 chr3R 31435377 intron Gprk2 + chr3R 31435460 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_10_31435001 chr3R_31435001 RAL-375 1941 chr3R 31450760 31450782 chr3R 31450927 31450957 6 171 27.5 23.5 25.5 0.2 197 chr3R 31450760 intron Gprk2 + chr3R 31450858 intron Gprk2 + chr3R 31450957 intron Gprk2 + chr3R_6_31450001 chr3R_31450001 RAL-375 1942 chr3R 31599783 31599798 chr3R 31599868 31599883 4 85 5.0 2.0 3.5 0.9 100 chr3R 31599783 intron CycG - chr3R 31599833 intron CycG - chr3R 31599883 intron CycG - chr3R_4_31595001 chr3R_31595001 RAL-375 1943 chr3R 31656235 31656254 chr3R 31656316 31656335 7 80 5.5 5.5 5.5 1.1 100 chr3R 31656235 intron kek6 + chr3R 31656285 intron kek6 + chr3R 31656335 intron kek6 + chr3R_7_31655001 chr3R_31655001 RAL-375 1944 chr3R 31691520 31691533 chr3R 31696297 31696310 Doc 7 4777 1.0 4.5 2.8 1.8 4790 chr3R 31691520 intergenic not near genes chr3R 31693915 intergenic not near genes chr3R 31696310 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-375 1945 chr3R 31820316 31820323 chr3R 31820766 31820796 4 467 3.0 1.5 2.2 1.2 480 chr3R 31820316 intron RhoGAP100F + chr3R 31820556 intron RhoGAP100F + chr3R 31820796 intron RhoGAP100F + chr3R_4_31820001 chr3R_31820001 RAL-375 1946 chr3R 31930902 31930934 chr3R 31931001 31931029 7 95 2.0 3.0 2.5 2.0 127 chr3R 31930902 intron heph - chr3R 31930966 intron heph - chr3R 31931029 intron heph - chr3R_7_31930001 chr3R_31930001 RAL-375 1947 chr3R 31962077 31962094 chr3R 31962383 31962399 6 306 4.5 1.5 3.0 1.5 322 chr3R 31962077 intron heph - chr3R 31962238 intron heph - chr3R 31962399 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-375 1948 chr3R 31976548 31976574 chr3R 31976829 31976854 5 281 0.0 4.0 2.0 1.7 306 chr3R 31976548 intron heph - chr3R 31976701 intron heph - chr3R 31976854 intron heph - chr3R_5_31975001 chr3R_31975001 RAL-375 1949 chr3R 31997990 31998025 chr3R 32005460 32005489 blood 13 7469 2.0 2.5 2.2 4.1 7499 chr3R 31997990 intron heph - chr3R 32001740 intron heph - chr3R 32005489 intron heph - chr3R_13_32000001 chr3R_32000001 RAL-375 1950 chr4 76495 76522 chr4 81938 81965 I-element 8 5443 5.0 3.0 4.0 1.6 5470 chr4 76495 intron pan + chr4 79230 intron pan + chr4 81965 intron pan + chr4_8_75001 chr4_75001 RAL-375 1951 chr4 254703 254729 chr4 254786 254812 6 83 2.0 1.5 1.8 2.1 109 chr4 254703 intergenic RhoGAP102A + chr4 254758 intergenic RhoGAP102A + chr4 254812 intergenic RhoGAP102A + chr4_6_250001 chr4_250001 RAL-375 1952 chr4 257406 257437 chr4 257576 257606 8 169 2.5 2.0 2.2 2.5 200 chr4 257406 intron RhoGAP102A + chr4 257506 intron RhoGAP102A + chr4 257606 intron RhoGAP102A + chr4_8_255001 chr4_255001 RAL-375 1953 chr4 314523 314532 chr4 314601 314610 4 78 1.0 2.0 1.5 1.6 87 chr4 314523 intergenic CG32850 +,Zip102B - chr4 314566 intergenic CG32850 +,Zip102B - chr4 314610 intergenic CG32850 + chr4_4_310001 chr4_310001 RAL-375 1954 chr4 671615 671636 chr4 680198 680219 Tirant 7 8582 5.0 6.0 5.5 1.1 8604 chr4 671615 intron CG11360 + chr4 675917 intron CG11360 + chr4 680219 intron CG11360 + chr4_7_675001 chr4_675001 RAL-375 1955 chrX 178891 178919 chrX 178974 178999 8 82 3.5 2.5 3.0 2.0 108 chrX 178891 intron tyn + chrX 178945 intron tyn + chrX 178999 intron tyn + chrX_8_175001 chrX_175001 RAL-375 1956 chrX 318482 318500 chrX 323568 323586 flea 8 5086 2.5 3.5 3.0 2.0 5104 chrX 318482 intron,intron CG3777 +,CG32816 - chrX 321034 intron,intron CG3777 +,CG32816 - chrX 323586 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-375 1957 chrX 367039 367070 chrX 367136 367167 10 97 1.0 4.5 2.8 2.6 128 chrX 367039 intron,5` UTR CG32816 -,yar + chrX 367103 intron CG32816 - chrX 367167 intron CG32816 - chrX_10_365001 chrX_365001 RAL-375 1958 chrX 428420 428452 chrX 434605 434637 3S18 10 6184 4.5 0.5 2.5 2.9 6217 chrX 428420 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_10_430001 chrX_430001 RAL-375 1959 chrX 449889 449914 chrX 449986 450011 8 97 2.0 2.0 2.0 2.7 122 chrX 449889 intron CG32816 - chrX 449950 intron CG32816 - chrX 450011 intron CG32816 - chrX_8_445001 chrX_445001 RAL-375 1960 chrX 547634 547651 chrX 547878 547895 4 244 5.0 2.0 3.5 0.9 261 chrX 547634 intron Appl + chrX 547764 intron Appl + chrX 547895 intron Appl + chrX_4_545001 chrX_545001 RAL-375 1961 chrX 551424 551452 chrX 558986 559014 412 7 7561 2.5 1.0 1.8 2.5 7590 chrX 551424 intron Appl + chrX 555219 intron Appl + chrX 559014 intron Appl + chrX_7_555001 chrX_555001 RAL-375 1962 chrX 561575 561598 chrX 561668 561677 5 91 3.5 2.5 3.0 1.2 102 chrX 561575 intron Appl + chrX 561626 intron Appl + chrX 561677 intron Appl + chrX_5_560001 chrX_560001 RAL-375 1963 chrX 667648 667683 chrX 667732 667767 4 84 2.5 2.0 2.2 1.2 119 chrX 667648 intergenic not near genes chrX 667708 intergenic not near genes chrX 667767 intergenic not near genes chrX_4_665001 chrX_665001 RAL-375 1964 chrX 670266 670297 chrX 670346 670377 5 80 0.0 0.5 0.2 4.2 111 chrX 670266 intergenic not near genes chrX 670322 intergenic not near genes chrX 670377 intergenic not near genes chrX_5_670001 chrX_670001 RAL-375 1965 chrX 680843 680859 chrX 680926 680942 7 83 7.0 3.5 5.2 1.1 99 chrX 680843 intergenic not near genes chrX 680892 intergenic not near genes chrX 680942 intergenic not near genes chrX_7_680001 chrX_680001 RAL-375 1966 chrX 802308 802320 chrX 802362 802397 5 67 2.0 2.0 2.0 1.7 89 chrX 802308 exon CG13359 - chrX 802352 exon CG13359 - chrX 802397 exon CG13359 - chrX_5_800001 chrX_800001 RAL-375 1967 chrX 812273 812291 chrX 817896 817922 297 4 5629 3.0 2.0 2.5 1.1 5649 chrX 812273 intron CG43867 - chrX 815098 intron CG43867 - chrX 817922 intron CG43867 - chrX_4_815001 chrX_815001 RAL-375 1968 chrX 827600 827631 chrX 835392 835423 roo 12 7792 1.5 2.5 2.0 4.0 7823 chrX 827600 intron CG43867 - chrX 831512 intron CG43867 - chrX 835423 intron CG43867 - chrX_12_830001 chrX_830001 RAL-375 1969 chrX 906702 906719 chrX 908491 908508 S-element 5 1788 3.0 3.5 3.2 1.2 1806 chrX 906702 intron CG43867 - chrX 907605 intron CG43867 - chrX 908508 intron CG43867 - chrX_5_905001 chrX_905001 RAL-375 1970 chrX 912022 912055 chrX 912112 912145 5 90 2.5 1.0 1.8 1.8 123 chrX 912022 intron CG43867 - chrX 912084 intron CG43867 - chrX 912145 intron CG43867 - chrX_5_910001 chrX_910001 RAL-375 1971 chrX 983771 983797 chrX 983889 983913 4 117 1.5 1.5 1.5 1.6 142 chrX 983771 intergenic not near genes chrX 983842 intergenic not near genes chrX 983913 intergenic not near genes chrX_4_980001 chrX_980001 RAL-375 1972 chrX 1051083 1051091 chrX 1051146 1051169 4 74 3.0 8.0 5.5 0.6 86 chrX 1051083 intron CR44779 + chrX 1051126 intron CR44779 + chrX 1051169 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-375 1973 chrX 1053117 1053123 chrX 16983076 16983076 5 15929956 16.5 14.5 15.5 0.3 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-375 1974 chrX 1218485 1218492 chrX 1218562 1218586 5 90 2.0 5.0 3.5 1.1 101 chrX 1218485 3` UTR CG3638 - chrX 1218536 3` UTR CG3638 - chrX 1218586 3` UTR CG3638 - chrX_5_1215001 chrX_1215001 RAL-375 1975 chrX 1253729 1253762 chrX 1253811 1253844 13 81 2.0 4.0 3.0 3.2 115 chrX 1253729 intron Atf3 - chrX 1253786 intron Atf3 - chrX 1253844 intron Atf3 - chrX_13_1250001 chrX_1250001 RAL-375 1976 chrX 1357775 1357806 chrX 1367945 1367975 Doc 12 10170 5.5 4.0 4.8 2.1 10200 chrX 1357775 intergenic png - chrX 1362875 intergenic not near genes chrX 1367975 intergenic not near genes chrX_12_1360001 chrX_1360001 RAL-375 1977 chrX 1518035 1518074 chrX 1523437 1523456 jockey 8 5398 2.0 3.5 2.8 2.1 5421 chrX 1518035 intergenic inc + chrX 1520746 intergenic not near genes chrX 1523456 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-375 1978 chrX 1627980 1627997 chrX 1635447 1635460 gtwin 4 7466 4.0 5.0 4.5 0.7 7480 chrX 1627980 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635460 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-375 1979 chrX 1674855 1674874 chrX 1674931 1674950 6 76 6.0 0.0 3.0 1.5 95 chrX 1674855 3` UTR CG32809 - chrX 1674902 3` UTR CG32809 - chrX 1674950 3` UTR CG32809 - chrX_6_1670001 chrX_1670001 RAL-375 1980 chrX 1750646 1750660 chrX 1750730 1750758 6 94 4.0 4.0 4.0 1.2 112 chrX 1750646 intron Scgdelta - chrX 1750702 intron Scgdelta - chrX 1750758 intron Scgdelta - chrX_6_1750001 chrX_1750001 RAL-375 1981 chrX 1753136 1753169 chrX 1753214 1753246 15 77 4.0 3.0 3.5 3.3 110 chrX 1753136 intron Scgdelta - chrX 1753191 intron Scgdelta - chrX 1753246 intron Scgdelta - chrX_15_1750001 chrX_1750001 RAL-375 1982 chrX 1823597 1823624 chrX 1823790 1823816 7 191 5.0 1.5 3.2 1.7 219 chrX 1823597 intron CG42666 + chrX 1823706 intron CG42666 + chrX 1823816 intron CG42666 + chrX_7_1820001 chrX_1820001 RAL-375 1983 chrX 1837312 1837343 chrX 1837397 1837428 5 85 3.5 2.5 3.0 1.2 116 chrX 1837312 intron CG42666 + chrX 1837370 intron CG42666 + chrX 1837428 intron CG42666 + chrX_5_1835001 chrX_1835001 RAL-375 1984 chrX 1930540 1930567 chrX 1938110 1938135 opus 6 7570 1.0 3.5 2.2 1.9 7595 chrX 1930540 intergenic CG11596 + chrX 1934338 intergenic not near genes chrX 1938135 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-375 1985 chrX 2399848 2399854 chrX 2408194 2408207 roo 4 8351 5.0 4.5 4.8 0.7 8359 chrX 2399848 intergenic not near genes chrX 2404028 intergenic not near genes chrX 2408207 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-375 1986 chrX 2578821 2578833 chrX 2578911 2578925 4 92 4.0 4.5 4.2 0.8 104 chrX 2578821 intergenic Pdfr +,Vha36-3 - chrX 2578873 intergenic Vha36-3 -,Pdfr + chrX 2578925 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-375 1987 chrX 2610383 2610389 chrX 2617500 2617506 HMS-Beagle 5 7117 9.0 2.5 5.8 0.7 7123 chrX 2610383 intergenic CG8636 - chrX 2613944 intergenic not near genes chrX 2617506 intergenic Tsp3A - chrX_5_2610001 chrX_2610001 RAL-375 1988 chrX 2649942 2649970 chrX 2650021 2650047 13 77 3.0 4.0 3.5 2.9 105 chrX 2649942 intron sgg + chrX 2649994 intron sgg + chrX 2650047 intron sgg + chrX_13_2645001 chrX_2645001 RAL-375 1989 chrX 2664385 2664401 chrX 2665531 2665531 1360 4 1142 2.0 4.0 3.0 1.0 1146 chrX 2664385 intron sgg + chrX 2664958 intron sgg + chrX 2665531 intron sgg + chrX_4_2660001 chrX_2660001 RAL-375 1990 chrX 2664403 2664420 chrX 2665528 2665566 1360 11 1141 1.5 3.5 2.5 3.1 1163 chrX 2664403 intron sgg + chrX 2664984 intron sgg + chrX 2665566 intron sgg + chrX_11_2660001 chrX_2660001 RAL-375 1991 chrX 2844899 2844933 chrX 2852309 2852343 mdg1 4 7410 4.0 2.5 3.2 1.0 7444 chrX 2844899 intron kirre + chrX 2848621 intron kirre + chrX 2852343 intron kirre + chrX_4_2845001 chrX_2845001 RAL-375 1992 chrX 2880034 2880066 chrX 2880119 2880152 12 84 2.5 4.5 3.5 2.7 118 chrX 2880034 intron kirre + chrX 2880093 intron kirre + chrX 2880152 intron kirre + chrX_12_2880001 chrX_2880001 RAL-375 1993 chrX 2932231 2932253 chrX 2932314 2932336 6 83 3.0 1.5 2.2 1.9 105 chrX 2932231 intron,exon kirre +,CG32793 + chrX 2932284 intron,exon kirre +,CG32793 + chrX 2932336 intron,exon kirre +,CG32793 + chrX_6_2930001 chrX_2930001 RAL-375 1994 chrX 2934517 2934547 chrX 2934601 2934630 7 84 1.0 0.0 0.5 4.7 113 chrX 2934517 intron kirre + chrX 2934574 intron kirre + chrX 2934630 intron kirre + chrX_7_2930001 chrX_2930001 RAL-375 1995 chrX 2966796 2966823 chrX 2966912 2966939 6 115 2.0 2.0 2.0 2.0 143 chrX 2966796 intron,intron kirre +,rst - chrX 2966868 intron,intron kirre +,rst - chrX 2966939 intron,intron kirre +,rst - chrX_6_2965001 chrX_2965001 RAL-375 1996 chrX 3075635 3075664 chrX 3080940 3080970 Transpac 10 5306 3.5 3.5 3.5 2.2 5335 chrX 3075635 intron kirre + chrX 3078302 intron kirre + chrX 3080970 intron kirre + chrX_10_3075001 chrX_3075001 RAL-375 1997 chrX 3218509 3218538 chrX 3227658 3227687 roo 5 9149 1.0 2.5 1.8 1.8 9178 chrX 3218509 intron dnc + chrX 3223098 intron dnc + chrX 3227687 intron dnc + chrX_5_3220001 chrX_3220001 RAL-375 1998 chrX 3243636 3243661 chrX 3243716 3243747 6 88 2.0 2.5 2.2 1.9 111 chrX 3243636 intron dnc + chrX 3243692 intron dnc + chrX 3243747 intron dnc + chrX_6_3240001 chrX_3240001 RAL-375 1999 chrX 3308407 3308413 chrX 3308482 3308491 4 77 3.5 0.0 1.8 1.4 84 chrX 3308407 intron dnc + chrX 3308449 intron dnc + chrX 3308491 intron dnc + chrX_4_3305001 chrX_3305001 RAL-375 2000 chrX 3408989 3409018 chrX 3409066 3409095 9 77 0.0 3.5 1.8 3.2 106 chrX 3408989 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409095 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-375 2001 chrX 3410471 3410492 chrX 3410593 3410614 7 122 2.0 2.5 2.2 2.2 143 chrX 3410471 intron,intron CR44999 +,CG12535 - chrX 3410542 intron,intron CR44999 +,CG12535 - chrX 3410614 intron,intron CR44999 +,CG12535 - chrX_7_3410001 chrX_3410001 RAL-375 2002 chrX 3493089 3493121 chrX 3502248 3502280 roo 6 9159 3.0 0.5 1.8 2.1 9191 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-375 2003 chrX 3535412 3535431 chrX 3535503 3535522 6 89 1.0 4.5 2.8 1.6 110 chrX 3535412 intron CG32791 - chrX 3535467 intron CG32791 - chrX 3535522 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-375 2004 chrX 3595024 3595041 chrX 3595102 3595119 4 77 0.0 3.5 1.8 1.4 95 chrX 3595024 intron AstA-R1 + chrX 3595072 intron AstA-R1 + chrX 3595119 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-375 2005 chrX 3597549 3597571 chrX 3619717 3619737 roo 6 22168 6.0 6.0 6.0 0.9 22188 chrX 3597549 intron AstA-R1 + chrX 3608643 intron AstA-R1 + chrX 3619737 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-375 2006 chrX 3630548 3630569 chrX 3630623 3630645 6 76 3.0 5.0 4.0 1.2 97 chrX 3630548 intron AstA-R1 + chrX 3630596 intron AstA-R1 + chrX 3630645 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-375 2007 chrX 3662472 3662490 chrX 3662555 3662573 4 84 6.0 7.5 6.8 0.5 101 chrX 3662472 intron AstA-R1 + chrX 3662522 intron AstA-R1 + chrX 3662573 intron AstA-R1 + chrX_4_3660001 chrX_3660001 RAL-375 2008 chrX 3713107 3713134 chrX 3713215 3713243 4 109 2.0 2.0 2.0 1.3 136 chrX 3713107 intron Rala - chrX 3713175 intron Rala - chrX 3713243 intron Rala - chrX_4_3710001 chrX_3710001 RAL-375 2009 chrX 3726768 3726797 chrX 3730164 3730193 NOF 7 3396 4.5 6.0 5.2 1.1 3425 chrX 3726768 intron tlk + chrX 3728480 intron tlk + chrX 3730193 intron tlk + chrX_7_3725001 chrX_3725001 RAL-375 2010 chrX 3752394 3752407 chrX 3764743 3764756 17.6 6 12349 6.5 7.0 6.8 0.8 12362 chrX 3752394 intron tlk + chrX 3758575 intron tlk + chrX 3764756 intron tlk + chrX_6_3755001 chrX_3755001 RAL-375 2011 chrX 3842328 3842350 chrX 3842569 3842591 pogo 6 241 3.0 3.5 3.2 1.4 263 chrX 3842328 intron ec + chrX 3842460 intron ec + chrX 3842591 intron ec + chrX_6_3840001 chrX_3840001 RAL-375 2012 chrX 3881268 3881301 chrX 3881407 3881440 12 139 4.0 1.0 2.5 3.4 172 chrX 3881268 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881440 intron VhaAC39-1 + chrX_12_3880001 chrX_3880001 RAL-375 2013 chrX 3950797 3950826 chrX 3950877 3950906 11 79 3.0 2.0 2.5 3.1 109 chrX 3950797 intron Vap-33A + chrX 3950852 intron Vap-33A + chrX 3950906 intron Vap-33A + chrX_11_3950001 chrX_3950001 RAL-375 2014 chrX 3986862 3986886 chrX 3994495 3994519 412 4 7633 6.0 0.5 3.2 1.0 7657 chrX 3986862 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994519 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-375 2015 chrX 4029528 4029547 chrX 4029718 4029735 4 190 3.0 0.5 1.8 1.4 207 chrX 4029528 intergenic not near genes chrX 4029632 intergenic not near genes chrX 4029735 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-375 2016 chrX 4047468 4047499 chrX 4047581 4047612 7 113 3.0 4.5 3.8 1.5 144 chrX 4047468 intergenic CR45482 - chrX 4047540 intergenic CR45482 - chrX 4047612 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-375 2017 chrX 4101885 4101894 chrX 4101965 4101974 4 80 1.0 3.5 2.2 1.2 89 chrX 4101885 exon CG15375 + chrX 4101930 exon CG15375 + chrX 4101974 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-375 2018 chrX 4132668 4132701 chrX 4132835 4132869 4 168 0.5 1.5 1.0 2.0 201 chrX 4132668 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132869 intergenic Fas2 -,GlcAT-I + chrX_4_4130001 chrX_4130001 RAL-375 2019 chrX 4157899 4157922 chrX 4164952 4164975 297 5 7052 2.0 3.0 2.5 1.4 7076 chrX 4157899 intron Fas2 - chrX 4161437 intron Fas2 - chrX 4164975 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-375 2020 chrX 4324395 4324412 chrX 4324471 4324489 7 77 0.0 3.0 1.5 2.8 94 chrX 4324395 intron norpA + chrX 4324442 intron norpA + chrX 4324489 intron norpA + chrX_7_4320001 chrX_4320001 RAL-375 2021 chrX 4338674 4338693 chrX 4338753 4338772 7 78 3.0 1.0 2.0 2.3 98 chrX 4338674 intron norpA + chrX 4338723 intron norpA + chrX 4338772 intron norpA + chrX_7_4335001 chrX_4335001 RAL-375 2022 chrX 4343887 4343893 chrX 4344001 4344007 4 114 1.0 2.0 1.5 1.6 120 chrX 4343887 intron norpA + chrX 4343947 intron norpA + chrX 4344007 intron norpA + chrX_4_4340001 chrX_4340001 RAL-375 2023 chrX 4358090 4358120 chrX 4358192 4358222 4 102 4.0 0.5 2.2 1.2 132 chrX 4358090 intron norpA + chrX 4358156 intron norpA + chrX 4358222 intron norpA + chrX_4_4355001 chrX_4355001 RAL-375 2024 chrX 4361440 4361473 chrX 4361519 4361552 9 79 0.5 3.5 2.0 3.0 112 chrX 4361440 intron norpA + chrX 4361496 intron norpA + chrX 4361552 intron norpA + chrX_9_4360001 chrX_4360001 RAL-375 2025 chrX 4389377 4389380 chrX 12946232 12946235 5 8556856 3.5 10.0 6.8 0.6 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_5_8665001 chrX_8665001 RAL-375 2026 chrX 4396983 4396996 chrX 4397067 4397079 5 83 1.5 6.0 3.8 1.0 96 chrX 4396983 intron CR32773 - chrX 4397031 intron CR32773 - chrX 4397079 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-375 2027 chrX 4398818 4398854 chrX 4398907 4398943 10 88 2.5 1.0 1.8 3.6 125 chrX 4398818 intron CR32773 - chrX 4398880 intron CR32773 - chrX 4398943 intron CR32773 - chrX_10_4395001 chrX_4395001 RAL-375 2028 chrX 4700397 4700427 chrX 4700740 4700770 jockey 7 343 1.0 2.0 1.5 2.8 373 chrX 4700397 3` UTR ctp + chrX 4700584 3` UTR ctp + chrX 4700770 3` UTR ctp + chrX_7_4700001 chrX_4700001 RAL-375 2029 chrX 4763251 4763283 chrX 4763739 4763771 Stalker4 5 488 1.5 2.0 1.8 1.8 520 chrX 4763251 intergenic not near genes chrX 4763511 intergenic not near genes chrX 4763771 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-375 2030 chrX 4792379 4792409 chrX 4792812 4792842 jockey 7 433 4.5 5.0 4.8 1.2 463 chrX 4792379 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792842 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-375 2031 chrX 4827966 4827999 chrX 4835337 4835347 Stalker4 8 7368 1.5 5.5 3.5 1.8 7381 chrX 4827966 intergenic not near genes chrX 4831656 intergenic not near genes chrX 4835347 intergenic not near genes chrX_8_4830001 chrX_4830001 RAL-375 2032 chrX 4990043 4990075 chrX 4997256 4997289 roo 8 7214 2.0 2.0 2.0 2.7 7246 chrX 4990043 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997289 intron CR44833 - chrX_8_4990001 chrX_4990001 RAL-375 2033 chrX 5096287 5096305 chrX 5103839 5103870 springer 7 7563 2.0 3.5 2.8 1.8 7583 chrX 5096287 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-375 2034 chrX 5143012 5143036 chrX 5143139 5143163 9 123 1.5 2.0 1.8 3.2 151 chrX 5143012 intron,intron CG15465 +,rg + chrX 5143088 intron,intron CG15465 +,rg + chrX 5143163 intron,intron CG15465 +,rg + chrX_9_5140001 chrX_5140001 RAL-375 2035 chrX 5159727 5159749 chrX 5159822 5159844 4 94 1.5 2.5 2.0 1.3 117 chrX 5159727 intron,intron CG15465 +,rg + chrX 5159786 intron,intron CG15465 +,rg + chrX 5159844 intron,intron CG15465 +,rg + chrX_4_5155001 chrX_5155001 RAL-375 2036 chrX 5350303 5350315 chrX 5350412 5350420 6 107 2.0 5.5 3.8 1.2 117 chrX 5350303 intron SK + chrX 5350362 intron SK + chrX 5350420 intron SK + chrX_6_5350001 chrX_5350001 RAL-375 2037 chrX 5684667 5684696 chrX 5684749 5684777 12 81 5.5 3.0 4.2 2.3 110 chrX 5684667 intergenic CG42449 + chrX 5684722 intergenic CG42449 + chrX 5684777 intergenic CG42449 +,CG3160 - chrX_12_5680001 chrX_5680001 RAL-375 2038 chrX 5883824 5883841 chrX 5884065 5884082 pogo 4 240 2.5 5.5 4.0 0.8 258 chrX 5883824 intron CR45668 - chrX 5883953 intron CR45668 - chrX 5884082 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-375 2039 chrX 5884170 5884192 chrX 5884408 5884433 pogo 8 238 4.5 4.0 4.2 1.5 263 chrX 5884170 intron CR45668 - chrX 5884302 intron CR45668 - chrX 5884433 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-375 2040 chrX 5884071 5884095 chrX 5884467 5884491 pogo 7 396 16.5 12.0 14.2 0.5 420 chrX 5884071 intron CR45668 - chrX 5884281 intron CR45668 - chrX 5884491 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-375 2041 chrX 6053204 6053231 chrX 6053331 6053362 5 129 2.5 1.5 2.0 1.7 158 chrX 6053204 intron CG5921 + chrX 6053283 intron CG5921 + chrX 6053362 intron CG5921 + chrX_5_6050001 chrX_6050001 RAL-375 2042 chrX 6118696 6118732 chrX 6118778 6118814 16 81 2.5 3.0 2.8 4.2 118 chrX 6118696 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_16_6115001 chrX_6115001 RAL-375 2043 chrX 6171594 6171603 chrX 6179026 6179036 Quasimodo 4 7432 2.0 2.5 2.2 1.2 7442 chrX 6171594 intron Ca-alpha1T - chrX 6175315 intron Ca-alpha1T - chrX 6179036 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-375 2044 chrX 6203762 6203785 chrX 6203842 6203867 11 81 3.0 4.5 3.8 2.3 105 chrX 6203762 intergenic not near genes chrX 6203814 intergenic not near genes chrX 6203867 intergenic not near genes chrX_11_6200001 chrX_6200001 RAL-375 2045 chrX 6312189 6312217 chrX 6312272 6312296 9 82 0.5 2.5 1.5 3.6 107 chrX 6312189 intron CG15894 + chrX 6312242 intron CG15894 + chrX 6312296 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-375 2046 chrX 6314433 6314449 chrX 6314508 6314525 5 75 1.5 3.0 2.2 1.6 92 chrX 6314433 intron CG15894 + chrX 6314479 intron CG15894 + chrX 6314525 intron CG15894 + chrX_5_6310001 chrX_6310001 RAL-375 2047 chrX 6335217 6335241 chrX 6337727 6337751 Tirant 10 2510 0.0 2.0 1.0 5.0 2534 chrX 6335217 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_10_6335001 chrX_6335001 RAL-375 2048 chrX 6388669 6388689 chrX 6388745 6388764 4 76 3.0 4.0 3.5 0.9 95 chrX 6388669 intergenic not near genes chrX 6388716 intergenic not near genes chrX 6388764 intergenic not near genes chrX_4_6385001 chrX_6385001 RAL-375 2049 chrX 6404840 6404866 chrX 6404967 6404992 5 127 2.5 2.5 2.5 1.4 152 chrX 6404840 intergenic not near genes chrX 6404916 intergenic not near genes chrX 6404992 intergenic not near genes chrX_5_6400001 chrX_6400001 RAL-375 2050 chrX 6562816 6562834 chrX 6571298 6571310 Tirant 5 8481 6.5 1.0 3.8 1.0 8494 chrX 6562816 intron CG34417 + chrX 6567063 intron CG34417 + chrX 6571310 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-375 2051 chrX 6605477 6605506 chrX 6608499 6608527 Burdock 7 3022 1.0 4.5 2.8 1.8 3050 chrX 6605477 intron pigs + chrX 6607002 intron pigs + chrX 6608527 intron pigs + chrX_7_6605001 chrX_6605001 RAL-375 2052 chrX 6897691 6897710 chrX 6897800 6897813 6 108 1.5 0.0 0.8 3.3 122 chrX 6897691 intergenic not near genes chrX 6897752 intergenic not near genes chrX 6897813 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-375 2053 chrX 6922767 6922792 chrX 6923013 6923033 7 245 1.5 3.0 2.2 2.2 266 chrX 6922767 intron CG14431 + chrX 6922900 intron CG14431 + chrX 6923033 intron CG14431 + chrX_7_6920001 chrX_6920001 RAL-375 2054 chrX 6989507 6989522 chrX 6989590 6989609 8 86 2.5 3.0 2.8 2.1 102 chrX 6989507 intron ogre - chrX 6989558 intron ogre - chrX 6989609 intron ogre - chrX_8_6985001 chrX_6985001 RAL-375 2055 chrX 7023601 7023634 chrX 7030990 7031024 Tabor 13 7389 4.5 4.0 4.2 2.5 7423 chrX 7023601 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031024 intron CG12541 - chrX_13_7025001 chrX_7025001 RAL-375 2056 chrX 7125246 7125276 chrX 7134405 7134435 roo 9 9159 0.5 4.5 2.5 2.6 9189 chrX 7125246 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134435 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-375 2057 chrX 7570642 7570667 chrX 7570776 7570801 8 134 2.0 3.0 2.5 2.3 159 chrX 7570642 intergenic not near genes chrX 7570722 intergenic not near genes chrX 7570801 intergenic not near genes chrX_8_7570001 chrX_7570001 RAL-375 2058 chrX 7702903 7702927 chrX 7703342 7703366 jockey 7 439 3.5 4.0 3.8 1.5 463 chrX 7702903 intron CHES-1-like - chrX 7703134 intron CHES-1-like - chrX 7703366 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-375 2059 chrX 7832435 7832464 chrX 7832524 7832553 8 88 2.0 3.0 2.5 2.3 118 chrX 7832435 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832553 intron CG1402 + chrX_8_7830001 chrX_7830001 RAL-375 2060 chrX 7845726 7845757 chrX 7847217 7847248 hopper2 5 1490 4.5 2.0 3.2 1.2 1522 chrX 7845726 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847248 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-375 2061 chrX 7960877 7960906 chrX 7960966 7960995 11 89 3.0 2.5 2.8 2.9 118 chrX 7960877 intron,5` UTR sws -,CR45620 + chrX 7960936 intron sws - chrX 7960995 intron sws - chrX_11_7960001 chrX_7960001 RAL-375 2062 chrX 8085580 8085597 chrX 8085666 8085683 8 86 3.0 3.5 3.2 1.9 103 chrX 8085580 intron,5` UTR CG2256 -,CR45535 + chrX 8085632 intron,5` UTR CG2256 -,CR45535 + chrX 8085683 intron,5` UTR CG2256 -,CR45535 + chrX_8_8085001 chrX_8085001 RAL-375 2063 chrX 8178198 8178200 chrX 8178305 8178307 4 107 27.5 25.5 26.5 0.1 109 chrX 8178198 intergenic sdt + chrX 8178252 intergenic sdt + chrX 8178307 intergenic sdt + chrX_4_8175001 chrX_8175001 RAL-375 2064 chrX 8287487 8287502 chrX 8287623 8287638 5 135 3.0 3.5 3.2 1.2 151 chrX 8287487 intron nAChRalpha3 - chrX 8287562 intron nAChRalpha3 - chrX 8287638 exon nAChRalpha3 - chrX_5_8285001 chrX_8285001 RAL-375 2065 chrX 8364844 8364873 chrX 8365241 8365270 BS 9 397 3.0 1.0 2.0 3.0 426 chrX 8364844 intron nAChRalpha3 - chrX 8365057 intron nAChRalpha3 - chrX 8365270 intron nAChRalpha3 - chrX_9_8365001 chrX_8365001 RAL-375 2066 chrX 8397854 8397860 chrX 8398018 8398024 6 164 0.0 0.0 0.0 6.0 170 chrX 8397854 5` UTR CG15345 - chrX 8397939 5` UTR CG15345 - chrX 8398024 5` UTR CG15345 - chrX_6_8395001 chrX_8395001 RAL-375 2067 chrX 8500934 8500960 chrX 8501098 8501124 8 164 1.0 0.0 0.5 5.3 190 chrX 8500934 intron CG33181 + chrX 8501029 intron CG33181 + chrX 8501124 intron CG33181 + chrX_8_8500001 chrX_8500001 RAL-375 2068 chrX 8506531 8506546 chrX 8506739 8506754 4 208 3.5 2.5 3.0 1.0 223 chrX 8506531 intron CG33181 + chrX 8506642 intron CG33181 + chrX 8506754 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-375 2069 chrX 8513094 8513114 chrX 8513361 8513381 7 267 1.5 2.5 2.0 2.3 287 chrX 8513094 intron CG33181 + chrX 8513238 intron CG33181 + chrX 8513381 intron CG33181 + chrX_7_8510001 chrX_8510001 RAL-375 2070 chrX 8708689 8708715 chrX 8708873 8708901 15 184 21.5 14.5 18.0 0.8 212 chrX 8708689 intergenic not near genes chrX 8708795 intergenic not near genes chrX 8708901 intergenic not near genes chrX_15_8705001 chrX_8705001 RAL-375 2071 chrX 8856805 8856834 chrX 8856930 8856958 7 127 5.0 9.5 7.2 0.9 153 chrX 8856805 intron CG12075 + chrX 8856882 intron CG12075 + chrX 8856958 intron CG12075 + chrX_7_8855001 chrX_8855001 RAL-375 2072 chrX 8922324 8922363 chrX 8922758 8922797 jockey 14 431 1.5 3.0 2.2 4.4 473 chrX 8922324 intron rdgA + chrX 8922560 intron rdgA + chrX 8922797 intron rdgA + chrX_14_8920001 chrX_8920001 RAL-375 2073 chrX 9229903 9229934 chrX 9229983 9230014 7 79 3.0 0.5 1.8 2.5 111 chrX 9229903 intron CG12121 - chrX 9229958 intron CG12121 - chrX 9230014 intron CG12121 - chrX_7_9225001 chrX_9225001 RAL-375 2074 chrX 9473849 9473875 chrX 9474083 9474108 5 234 0.5 0.5 0.5 3.3 259 chrX 9473849 intron mgl - chrX 9473978 intron mgl - chrX 9474108 intron mgl - chrX_5_9470001 chrX_9470001 RAL-375 2075 chrX 9508137 9508164 chrX 9509655 9509682 jockey 9 1515 2.0 2.5 2.2 2.8 1545 chrX 9508137 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509682 intron CG32700 - chrX_9_9505001 chrX_9505001 RAL-375 2076 chrX 9548020 9548043 chrX 9548113 9548136 8 93 3.0 4.5 3.8 1.7 116 chrX 9548020 intron CG32700 - chrX 9548078 intron CG32700 - chrX 9548136 intron CG32700 - chrX_8_9545001 chrX_9545001 RAL-375 2077 chrX 9575793 9575824 chrX 9576117 9576148 mdg3 9 324 2.5 4.0 3.2 2.1 355 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-375 2078 chrX 9599174 9599200 chrX 9599251 9599278 9 74 5.0 4.5 4.8 1.6 104 chrX 9599174 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599278 intergenic not near genes chrX_9_9595001 chrX_9595001 RAL-375 2079 chrX 9758047 9758079 chrX 9758132 9758164 4 85 2.5 0.5 1.5 1.6 117 chrX 9758047 intergenic not near genes chrX 9758106 intergenic not near genes chrX 9758164 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-375 2080 chrX 9791434 9791448 chrX 9791627 9791641 5 193 2.5 0.5 1.5 2.0 207 chrX 9791434 intron CG32698 + chrX 9791538 intron CG32698 + chrX 9791641 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-375 2081 chrX 9791450 9791460 chrX 9791621 9791653 4 188 1.5 0.5 1.0 2.0 203 chrX 9791450 intron CG32698 + chrX 9791552 intron CG32698 + chrX 9791653 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-375 2082 chrX 9839364 9839377 chrX 9839446 9839459 5 82 0.0 5.0 2.5 1.4 95 chrX 9839364 intron CG32698 + chrX 9839412 intron CG32698 + chrX 9839459 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-375 2083 chrX 9923390 9923421 chrX 9923481 9923511 7 90 2.0 1.5 1.8 2.5 121 chrX 9923390 intergenic not near genes chrX 9923450 intergenic not near genes chrX 9923511 intergenic not near genes chrX_7_9920001 chrX_9920001 RAL-375 2084 chrX 10134003 10134034 chrX 10134087 10134120 7 85 0.5 3.0 1.8 2.5 117 chrX 10134003 exon,intron RhoU +,CR44894 - chrX 10134062 exon,intron RhoU +,CR44894 - chrX 10134120 intron,intron RhoU +,CR44894 - chrX_7_10130001 chrX_10130001 RAL-375 2085 chrX 10138217 10138243 chrX 10145720 10145747 412 6 7504 6.0 4.5 5.2 1.0 7530 chrX 10138217 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145747 intron,intron RhoU +,CR44894 - chrX_6_10140001 chrX_10140001 RAL-375 2086 chrX 10506502 10506522 chrX 10506587 10506595 8 84 2.0 2.0 2.0 2.7 93 chrX 10506502 intron spri - chrX 10506548 intron spri - chrX 10506595 intron spri - chrX_8_10505001 chrX_10505001 RAL-375 2087 chrX 10550851 10550889 chrX 10552318 10552326 hobo 8 1463 2.0 2.0 2.0 2.7 1475 chrX 10550851 intron spri - chrX 10551588 intron spri - chrX 10552326 intron spri - chrX_8_10550001 chrX_10550001 RAL-375 2088 chrX 10579640 10579666 chrX 10579732 10579757 6 92 1.0 2.0 1.5 2.4 117 chrX 10579640 intron spri - chrX 10579698 intron spri - chrX 10579757 intron spri - chrX_6_10575001 chrX_10575001 RAL-375 2089 chrX 10686055 10686083 chrX 10691192 10691215 roo 9 5136 2.0 2.5 2.2 2.8 5160 chrX 10686055 intron X11Lbeta + chrX 10688635 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_9_10685001 chrX_10685001 RAL-375 2090 chrX 10719127 10719132 chrX 10719211 10719216 5 84 0.0 5.5 2.8 1.3 89 chrX 10719127 intron CG32676 - chrX 10719172 intron CG32676 - chrX 10719216 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-375 2091 chrX 10719134 10719150 chrX 10719210 10719234 6 82 0.0 5.0 2.5 1.7 100 chrX 10719134 intron CG32676 - chrX 10719184 intron CG32676 - chrX 10719234 intron CG32676 - chrX_6_10715001 chrX_10715001 RAL-375 2092 chrX 11124042 11124055 chrX 11124116 11124131 4 75 2.5 3.5 3.0 1.0 89 chrX 11124042 5` UTR CG11122 - chrX 11124086 5` UTR CG11122 - chrX 11124131 5` UTR CG11122 - chrX_4_11120001 chrX_11120001 RAL-375 2093 chrX 11141977 11142064 chrX 11142053 11142140 8 76 0.0 0.0 0.0 8.0 163 chrX 11141977 intergenic CG15199 - chrX 11142058 intergenic CG15199 -,CG15202 + chrX 11142140 intergenic CG15199 -,CG15202 + chrX_8_11140001 chrX_11140001 RAL-375 2094 chrX 11312064 11312091 chrX 11319417 11319423 Stalker2 6 7347 2.0 2.0 2.0 2.0 7359 chrX 11312064 intergenic not near genes chrX 11315744 intergenic not near genes chrX 11319423 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-375 2095 chrX 11627846 11627862 chrX 11627937 11627947 7 90 5.0 2.5 3.8 1.5 101 chrX 11627846 intron Ptp10D + chrX 11627896 intron Ptp10D + chrX 11627947 intron Ptp10D + chrX_7_11625001 chrX_11625001 RAL-375 2096 chrX 11633416 11633449 chrX 11640470 11640503 297 13 7054 4.0 2.0 3.0 3.2 7087 chrX 11633416 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_13_11635001 chrX_11635001 RAL-375 2097 chrX 11719873 11719904 chrX 11719953 11719983 6 80 1.0 4.0 2.5 1.7 110 chrX 11719873 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11719983 intergenic prtp +,Tango10 + chrX_6_11715001 chrX_11715001 RAL-375 2098 chrX 11836185 11836209 chrX 11836266 11836289 4 81 4.5 3.0 3.8 0.8 104 chrX 11836185 3` UTR rudhira + chrX 11836237 3` UTR rudhira + chrX 11836289 3` UTR rudhira + chrX_4_11835001 chrX_11835001 RAL-375 2099 chrX 6545779 6545780 chrX 11858986 11858987 4 5313207 13.5 15.0 14.2 0.3 5313208 chrX 6545779 intron CG34417 + chrX 9202383 intergenic not near genes chrX 11858987 intron ATP7 + chrX_4_9200001 chrX_9200001 RAL-375 2100 chrX 11922364 11922376 chrX 11922497 11922509 9 132 3.0 3.0 3.0 2.2 145 chrX 11922364 exon Sclp - chrX 11922436 intron Sclp - chrX 11922509 intron Sclp - chrX_9_11920001 chrX_11920001 RAL-375 2101 chrX 12038086 12038109 chrX 12038280 12038303 12 193 6.5 4.0 5.2 1.9 217 chrX 12038086 intergenic not near genes chrX 12038194 intergenic not near genes chrX 12038303 intergenic not near genes chrX_12_12035001 chrX_12035001 RAL-375 2102 chrX 12094033 12094068 chrX 12094125 12094160 10 88 2.5 3.0 2.8 2.6 127 chrX 12094033 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094160 intron,intron CR43960 +,Ten-a + chrX_10_12090001 chrX_12090001 RAL-375 2103 chrX 12168135 12168166 chrX 12173577 12173608 I-element 5 5440 8.0 5.0 6.5 0.7 5473 chrX 12168135 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173608 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-375 2104 chrX 12204711 12204731 chrX 12205062 12205082 5 351 3.0 2.0 2.5 1.4 371 chrX 12204711 intron Ten-a + chrX 12204896 intron Ten-a + chrX 12205082 intron Ten-a + chrX_5_12200001 chrX_12200001 RAL-375 2105 chrX 12300527 12300545 chrX 12300608 12300626 4 81 1.0 2.5 1.8 1.4 99 chrX 12300527 intron Ten-a + chrX 12300576 intron Ten-a + chrX 12300626 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-375 2106 chrX 12350774 12350781 chrX 12350854 12350862 4 80 4.5 0.5 2.5 1.1 88 chrX 12350774 intergenic not near genes chrX 12350818 intergenic not near genes chrX 12350862 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-375 2107 chrX 12350783 12350803 chrX 12350852 12350883 5 78 1.5 0.5 1.0 2.5 100 chrX 12350783 intergenic not near genes chrX 12350833 intergenic not near genes chrX 12350883 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-375 2108 chrX 12356861 12356878 chrX 12356972 12356988 7 110 1.0 7.0 4.0 1.4 127 chrX 12356861 intergenic not near genes chrX 12356924 intergenic not near genes chrX 12356988 intergenic not near genes chrX_7_12355001 chrX_12355001 RAL-375 2109 chrX 12532657 12532661 chrX 12532797 12532807 4 144 2.0 0.0 1.0 2.0 150 chrX 12532657 intron CG43921 - chrX 12532732 intron CG43921 - chrX 12532807 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-375 2110 chrX 12737617 12737635 chrX 12737866 12737884 4 249 2.5 3.0 2.8 1.1 267 chrX 12737617 intron Smr - chrX 12737750 intron Smr - chrX 12737884 intron Smr - chrX_4_12735001 chrX_12735001 RAL-375 2111 chrX 12752279 12752309 chrX 12752366 12752396 14 87 5.0 4.0 4.5 2.5 117 chrX 12752279 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752396 5` UTR CR44619 + chrX_14_12750001 chrX_12750001 RAL-375 2112 chrX 12785434 12785455 chrX 12785511 12785532 7 77 2.5 3.0 2.8 1.8 98 chrX 12785434 intergenic Pde9 -,CG32647 - chrX 12785483 intergenic Pde9 - chrX 12785532 intergenic Pde9 - chrX_7_12785001 chrX_12785001 RAL-375 2113 chrX 12823193 12823219 chrX 12823270 12823296 7 77 3.0 1.0 2.0 2.3 103 chrX 12823193 intron Pde9 - chrX 12823244 intron Pde9 - chrX 12823296 intron Pde9 - chrX_7_12820001 chrX_12820001 RAL-375 2114 chrX 12930600 12930605 chrX 12937716 12937721 HMS-Beagle 4 7116 2.5 7.0 4.8 0.7 7121 chrX 12930600 intron fne + chrX 12934160 intron fne + chrX 12937721 intron fne + chrX_4_12930001 chrX_12930001 RAL-375 2115 chrX 6854020 6854020 chrX 12946234 12946234 5 6092214 3.5 10.0 6.8 0.6 6092214 chrX 6854020 intron CG14434 - chrX 9900127 intergenic not near genes chrX 12946234 3` UTR fne + chrX_5_9900001 chrX_9900001 RAL-375 2116 chrX 12946234 12946234 chrX 18572525 18572525 4 5626291 10.5 8.5 9.5 0.4 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-375 2117 chrX 12985971 12986004 chrX 12986067 12986091 10 95 3.0 1.5 2.2 3.1 120 chrX 12985971 intergenic not near genes chrX 12986031 intergenic not near genes chrX 12986091 intergenic not near genes chrX_10_12985001 chrX_12985001 RAL-375 2118 chrX 13032893 13032917 chrX 13032997 13033021 9 104 1.0 3.0 2.0 3.0 128 chrX 13032893 exon rad + chrX 13032957 intron rad + chrX 13033021 intron rad + chrX_9_13030001 chrX_13030001 RAL-375 2119 chrX 13146604 13146631 chrX 13146692 13146719 8 88 0.0 5.5 2.8 2.1 115 chrX 13146604 intron CG32645 + chrX 13146662 intron CG32645 + chrX 13146719 intron CG32645 + chrX_8_13145001 chrX_13145001 RAL-375 2120 chrX 13236885 13236902 chrX 13236967 13236987 9 84 0.0 0.0 0.0 9.0 102 chrX 13236885 intron mew - chrX 13236936 intron mew - chrX 13236987 intron mew - chrX_9_13235001 chrX_13235001 RAL-375 2121 chrX 13278174 13278178 chrX 13278256 13278261 4 83 3.0 0.0 1.5 1.6 87 chrX 13278174 intron HDAC4 - chrX 13278218 intron HDAC4 - chrX 13278261 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-375 2122 chrX 13401505 13401521 chrX 13401857 13401873 jockey 4 352 1.5 2.5 2.0 1.3 368 chrX 13401505 intergenic CG1673 +,CG12725 - chrX 13401689 intergenic CG12725 -,CG1673 + chrX 13401873 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-375 2123 chrX 13403023 13403041 chrX 13403148 13403168 X-element 9 126 2.5 4.5 3.5 2.0 145 chrX 13403023 intergenic CG12725 - chrX 13403096 intergenic CG12725 - chrX 13403168 intergenic CG12725 - chrX_9_13400001 chrX_13400001 RAL-375 2124 chrX 13409180 13409208 chrX 13409266 13409294 8 86 2.5 5.0 3.8 1.7 114 chrX 13409180 3` UTR GstT4 + chrX 13409237 3` UTR GstT4 + chrX 13409294 3` UTR GstT4 + chrX_8_13405001 chrX_13405001 RAL-375 2125 chrX 13429469 13429495 chrX 13430618 13430644 jockey 4 1149 0.0 5.5 2.8 1.1 1175 chrX 13429469 intergenic not near genes chrX 13430056 intergenic not near genes chrX 13430644 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-375 2126 chrX 13463662 13463671 chrX 13469239 13469246 mdg3 5 5576 2.5 0.5 1.5 2.0 5584 chrX 13463662 intron Neto + chrX 13466454 intron Neto + chrX 13469246 intron Neto + chrX_5_13465001 chrX_13465001 RAL-375 2127 chrX 13754431 13754464 chrX 13754521 13754556 6 92 3.0 1.0 2.0 2.0 125 chrX 13754431 intron Pdcd4 - chrX 13754494 intron Pdcd4 - chrX 13754556 intron Pdcd4 - chrX_6_13750001 chrX_13750001 RAL-375 2128 chrX 13934294 13934322 chrX 13934377 13934405 5 83 0.0 1.5 0.8 2.8 111 chrX 13934294 intron mamo - chrX 13934350 intron mamo - chrX 13934405 intron mamo - chrX_5_13930001 chrX_13930001 RAL-375 2129 chrX 13937981 13938005 chrX 13941252 13941274 I-element 6 3270 2.5 3.5 3.0 1.5 3293 chrX 13937981 intron mamo - chrX 13939628 intron mamo - chrX 13941274 intron mamo - chrX_6_13935001 chrX_13935001 RAL-375 2130 chrX 13943274 13943288 chrX 13943365 13943374 4 90 0.0 2.5 1.2 1.8 100 chrX 13943274 intron mamo - chrX 13943324 intron mamo - chrX 13943374 intron mamo - chrX_4_13940001 chrX_13940001 RAL-375 2131 chrX 14105024 14105050 chrX 14114175 14114201 roo 9 9151 3.0 3.0 3.0 2.2 9177 chrX 14105024 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-375 2132 chrX 14131495 14131514 chrX 14131575 14131594 6 80 1.0 3.0 2.0 2.0 99 chrX 14131495 intergenic not near genes chrX 14131544 intergenic not near genes chrX 14131594 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-375 2133 chrX 14209464 14209489 chrX 14209555 14209579 8 90 1.5 1.5 1.5 3.2 115 chrX 14209464 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209579 intron,intron l(1)G0007 +,l(1)G0469 - chrX_8_14205001 chrX_14205001 RAL-375 2134 chrX 14300810 14300834 chrX 14300887 14300897 6 74 4.0 2.5 3.2 1.4 87 chrX 14300810 intergenic not near genes chrX 14300854 intergenic not near genes chrX 14300897 intergenic not near genes chrX_6_14300001 chrX_14300001 RAL-375 2135 chrX 14371808 14371836 chrX 14371888 14371916 6 80 4.5 2.0 3.2 1.4 108 chrX 14371808 intron dpr8 + chrX 14371862 intron dpr8 + chrX 14371916 intron dpr8 + chrX_6_14370001 chrX_14370001 RAL-375 2136 chrX 14484976 14484982 chrX 14485065 14485071 4 89 0.0 6.0 3.0 1.0 95 chrX 14484976 intergenic not near genes chrX 14485024 intergenic not near genes chrX 14485071 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-375 2137 chrX 14560269 14560301 chrX 14560353 14560385 8 84 1.5 2.5 2.0 2.7 116 chrX 14560269 intergenic not near genes chrX 14560327 intergenic not near genes chrX 14560385 intergenic not near genes chrX_8_14560001 chrX_14560001 RAL-375 2138 chrX 14572879 14572911 chrX 14572967 14572999 5 87 1.0 2.0 1.5 2.0 120 chrX 14572879 intergenic not near genes chrX 14572939 intergenic not near genes chrX 14572999 intergenic not near genes chrX_5_14570001 chrX_14570001 RAL-375 2139 chrX 14579106 14579138 chrX 14579188 14579220 12 81 2.0 2.5 2.2 3.8 114 chrX 14579106 intergenic not near genes chrX 14579163 intergenic not near genes chrX 14579220 intergenic not near genes chrX_12_14575001 chrX_14575001 RAL-375 2140 chrX 14624829 14624861 chrX 14624913 14624945 9 84 1.5 2.5 2.0 3.0 116 chrX 14624829 intron NetA - chrX 14624887 intron NetA - chrX 14624945 intron NetA - chrX_9_14620001 chrX_14620001 RAL-375 2141 chrX 14628756 14628783 chrX 14628837 14628864 13 81 1.5 2.5 2.0 4.3 108 chrX 14628756 intron NetA - chrX 14628810 intron NetA - chrX 14628864 intron NetA - chrX_13_14625001 chrX_14625001 RAL-375 2142 chrX 14636457 14636480 chrX 14641896 14641921 I-element 7 5440 3.0 2.0 2.5 2.0 5464 chrX 14636457 intron NetA - chrX 14639189 intron NetA - chrX 14641921 intron NetA - chrX_7_14635001 chrX_14635001 RAL-375 2143 chrX 14778033 14778058 chrX 14782830 14782855 Doc 4 4797 5.0 3.0 4.0 0.8 4822 chrX 14778033 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782855 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-375 2144 chrX 14818770 14818793 chrX 14823972 14823996 copia 7 5203 2.5 3.0 2.8 1.8 5226 chrX 14818770 intron rut - chrX 14821383 intron rut - chrX 14823996 intron rut - chrX_7_14820001 chrX_14820001 RAL-375 2145 chrX 14936867 14936891 chrX 14946123 14946148 roo 7 9257 3.5 2.5 3.0 1.8 9281 chrX 14936867 intron pdgy - chrX 14941508 intron pdgy - chrX 14946148 intron pdgy - chrX_7_14940001 chrX_14940001 RAL-375 2146 chrX 14968086 14968100 chrX 14968165 14968178 4 79 1.5 4.5 3.0 1.0 92 chrX 14968086 intron eag + chrX 14968132 intron eag + chrX 14968178 intron eag + chrX_4_14965001 chrX_14965001 RAL-375 2147 chrX 15149529 15149546 chrX 15149607 15149624 10 78 2.5 2.5 2.5 2.9 95 chrX 15149529 intron CG9095 - chrX 15149576 intron CG9095 - chrX 15149624 intron CG9095 - chrX_10_15145001 chrX_15145001 RAL-375 2148 chrX 15413048 15413085 chrX 15417350 15417385 Juan 17 4301 4.0 1.0 2.5 4.9 4337 chrX 15413048 intron Cngl - chrX 15415216 intron Cngl - chrX 15417385 intron Cngl - chrX_17_15415001 chrX_15415001 RAL-375 2149 chrX 15421927 15421952 chrX 15423438 15423463 pogo 8 1510 4.0 2.0 3.0 2.0 1536 chrX 15421927 intron Cngl - chrX 15422695 intron Cngl - chrX 15423463 intron Cngl - chrX_8_15420001 chrX_15420001 RAL-375 2150 chrX 15519817 15519827 chrX 15519880 15519905 4 74 0.5 2.0 1.2 1.8 88 chrX 15519817 intron Ac13E - chrX 15519861 intron Ac13E - chrX 15519905 intron Ac13E - chrX_4_15515001 chrX_15515001 RAL-375 2151 chrX 15666211 15666226 chrX 15666288 15666303 6 77 6.0 2.5 4.2 1.2 92 chrX 15666211 intergenic not near genes chrX 15666257 intergenic not near genes chrX 15666303 intergenic not near genes chrX_6_15665001 chrX_15665001 RAL-375 2152 chrX 15671197 15671209 chrX 15671284 15671296 5 87 1.5 0.0 0.8 2.8 99 chrX 15671197 intergenic CG15646 - chrX 15671246 intergenic CG15646 - chrX 15671296 intergenic CG15646 - chrX_5_15670001 chrX_15670001 RAL-375 2153 chrX 15681401 15681425 chrX 15681480 15681507 7 82 2.0 3.0 2.5 2.0 106 chrX 15681401 intergenic not near genes chrX 15681454 intergenic not near genes chrX 15681507 intergenic not near genes chrX_7_15680001 chrX_15680001 RAL-375 2154 chrX 15726403 15726437 chrX 15726485 15726510 12 81 3.0 3.0 3.0 3.0 107 chrX 15726403 exon CG8184 + chrX 15726456 intron CG8184 + chrX 15726510 intron CG8184 + chrX_12_15725001 chrX_15725001 RAL-375 2155 chrX 16160297 16160303 chrX 16160373 16160379 5 76 7.0 1.5 4.2 1.0 82 chrX 16160297 intergenic not near genes chrX 16160338 intergenic not near genes chrX 16160379 intergenic not near genes chrX_5_16160001 chrX_16160001 RAL-375 2156 chrX 16222778 16222808 chrX 16231127 16231157 roo 7 8349 1.0 3.5 2.2 2.2 8379 chrX 16222778 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231157 intergenic not near genes chrX_7_16225001 chrX_16225001 RAL-375 2157 chrX 16340669 16340699 chrX 16349826 16349854 roo 12 9157 3.5 2.5 3.0 3.0 9185 chrX 16340669 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349854 intergenic sl + chrX_12_16345001 chrX_16345001 RAL-375 2158 chrX 16492647 16492675 chrX 16498224 16498252 mdg3 10 5577 2.5 3.5 3.0 2.5 5605 chrX 16492647 intron para - chrX 16495450 intron para - chrX 16498252 intron para - chrX_10_16495001 chrX_16495001 RAL-375 2159 chrX 16519939 16519970 chrX 16520025 16520054 6 86 3.5 2.0 2.8 1.6 115 chrX 16519939 intron para - chrX 16519996 intron para - chrX 16520054 intron para - chrX_6_16515001 chrX_16515001 RAL-375 2160 chrX 16533815 16533838 chrX 16533894 16533918 6 80 4.0 3.0 3.5 1.3 103 chrX 16533815 intergenic not near genes chrX 16533866 intergenic not near genes chrX 16533918 intergenic not near genes chrX_6_16530001 chrX_16530001 RAL-375 2161 chrX 16647458 16647480 chrX 16647540 16647562 6 82 2.5 4.5 3.5 1.3 104 chrX 16647458 intron mthl1 + chrX 16647510 intron mthl1 + chrX 16647562 intron mthl1 + chrX_6_16645001 chrX_16645001 RAL-375 2162 chrX 16689622 16689656 chrX 16689707 16689742 6 81 3.0 1.5 2.2 1.9 120 chrX 16689622 intron Sep4 - chrX 16689682 intron Sep4 - chrX 16689742 intron Sep4 - chrX_6_16685001 chrX_16685001 RAL-375 2163 chrX 16785292 16785305 chrX 16785396 16785409 4 104 2.5 6.5 4.5 0.7 117 chrX 16785292 3` UTR CG9609 - chrX 16785350 3` UTR CG9609 - chrX 16785409 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-375 2164 chrX 16833210 16833222 chrX 16833295 16833307 8 85 2.5 0.0 1.2 3.6 97 chrX 16833210 intron CG13004 - chrX 16833258 intron CG13004 - chrX 16833307 intron CG13004 - chrX_8_16830001 chrX_16830001 RAL-375 2165 chrX 16841407 16841419 chrX 16841485 16841497 4 78 4.5 1.5 3.0 1.0 90 chrX 16841407 exon RSG7 - chrX 16841452 intron RSG7 - chrX 16841497 intron RSG7 - chrX_4_16840001 chrX_16840001 RAL-375 2166 chrX 16906652 16906679 chrX 16906739 16906766 5 87 2.0 2.0 2.0 1.7 114 chrX 16906652 intron CR44754 - chrX 16906709 intron CR44754 - chrX 16906766 intron CR44754 - chrX_5_16905001 chrX_16905001 RAL-375 2167 chrX 16936012 16936031 chrX 16936430 16936449 jockey 4 418 0.0 3.0 1.5 1.6 437 chrX 16936012 intron CG4928 + chrX 16936230 intron CG4928 + chrX 16936449 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-375 2168 chrX 16993493 16993520 chrX 16993674 16993700 7 180 4.0 3.0 3.5 1.6 207 chrX 16993493 intron CG45002 - chrX 16993596 intron CG45002 - chrX 16993700 intron CG45002 - chrX_7_16990001 chrX_16990001 RAL-375 2169 chrX 17054171 17054201 chrX 17054376 17054408 14 206 1.0 1.0 1.0 7.0 237 chrX 17054171 intron CG45002 - chrX 17054290 intron CG45002 - chrX 17054408 intron CG45002 - chrX_14_17050001 chrX_17050001 RAL-375 2170 chrX 17195207 17195236 chrX 17200291 17200320 flea 4 5084 2.0 2.0 2.0 1.3 5113 chrX 17195207 3` UTR baz + chrX 17197764 3` UTR baz + chrX 17200320 3` UTR baz + chrX_4_17195001 chrX_17195001 RAL-375 2171 chrX 17275529 17275564 chrX 17275607 17275642 9 78 0.5 1.5 1.0 4.5 113 chrX 17275529 intron f + chrX 17275586 intron f + chrX 17275642 intron f + chrX_9_17275001 chrX_17275001 RAL-375 2172 chrX 17290064 17290093 chrX 17290140 17290168 8 76 3.5 1.0 2.2 2.5 104 chrX 17290064 intron,intron CG5445 +,Fim - chrX 17290116 intron,intron CG5445 +,Fim - chrX 17290168 intron,intron CG5445 +,Fim - chrX_8_17290001 chrX_17290001 RAL-375 2173 chrX 17716586 17716604 chrX 17716672 17716691 6 85 2.0 1.0 1.5 2.4 105 chrX 17716586 intron CG42684 + chrX 17716638 intron CG42684 + chrX 17716691 intron CG42684 + chrX_6_17715001 chrX_17715001 RAL-375 2174 chrX 17792954 17792978 chrX 17796251 17796276 flea 5 3297 2.5 2.0 2.2 1.6 3322 chrX 17792954 intron OdsH + chrX 17794615 intron OdsH + chrX 17796276 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-375 2175 chrX 17911864 17911879 chrX 17911952 17911966 4 88 0.5 3.0 1.8 1.4 102 chrX 17911864 intron CG6847 + chrX 17911915 intron CG6847 + chrX 17911966 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-375 2176 chrX 18020813 18020844 chrX 18020900 18020931 8 87 1.5 0.5 1.0 4.0 118 chrX 18020813 intron Sh - chrX 18020872 intron Sh - chrX 18020931 intron Sh - chrX_8_18020001 chrX_18020001 RAL-375 2177 chrX 18122818 18122844 chrX 18122894 18122920 13 76 2.5 2.0 2.2 4.1 102 chrX 18122818 5` UTR CR45606 + chrX 18122869 5` UTR CR45606 + chrX 18122920 intergenic CR45606 + chrX_13_18120001 chrX_18120001 RAL-375 2178 chrX 18427380 18427406 chrX 18427791 18427817 10 411 3.5 2.0 2.8 2.6 437 chrX 18427380 intergenic CG42323 + chrX 18427598 intergenic not near genes chrX 18427817 intergenic not near genes chrX_10_18425001 chrX_18425001 RAL-375 2179 chrX 18429497 18429524 chrX 18434807 18434835 Transpac 12 5311 3.0 4.0 3.5 2.7 5338 chrX 18429497 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434835 intergenic not near genes chrX_12_18430001 chrX_18430001 RAL-375 2180 chrX 18486116 18486138 chrX 18486199 18486226 11 88 3.5 2.0 2.8 2.9 110 chrX 18486116 exon psh - chrX 18486171 intron psh - chrX 18486226 intron psh - chrX_11_18485001 chrX_18485001 RAL-375 2181 chrX 18537520 18537552 chrX 18537625 18537649 11 104 3.5 2.5 3.0 2.8 129 chrX 18537520 intron Bx + chrX 18537584 intron Bx + chrX 18537649 intron Bx + chrX_11_18535001 chrX_18535001 RAL-375 2182 chrX 18558777 18558805 chrX 18558859 18558887 8 81 0.0 2.0 1.0 4.0 110 chrX 18558777 intron Bx + chrX 18558832 intron Bx + chrX 18558887 intron Bx + chrX_8_18555001 chrX_18555001 RAL-375 2183 chrX 18563686 18563719 chrX 18563788 18563821 10 102 4.5 1.5 3.0 2.5 135 chrX 18563686 intron Bx + chrX 18563754 intron Bx + chrX 18563821 intron Bx + chrX_10_18560001 chrX_18560001 RAL-375 2184 chrX 12946234 12946235 chrX 18572524 18572525 4 5626290 10.5 8.5 9.5 0.4 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-375 2185 chrX 18645017 18645049 chrX 18645110 18645147 7 97 2.0 1.0 1.5 2.8 130 chrX 18645017 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645147 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-375 2186 chrX 18749618 18749646 chrX 18749702 18749730 9 84 3.5 5.0 4.2 1.7 112 chrX 18749618 intergenic not near genes chrX 18749674 intergenic not near genes chrX 18749730 intergenic not near genes chrX_9_18745001 chrX_18745001 RAL-375 2187 chrX 18883580 18883591 chrX 18883664 18883675 5 84 4.0 1.5 2.8 1.3 95 chrX 18883580 3` UTR CG34401 + chrX 18883628 3` UTR CG34401 + chrX 18883675 3` UTR CG34401 + chrX_5_18880001 chrX_18880001 RAL-375 2188 chrX 18896517 18896543 chrX 18896628 18896654 8 111 1.0 1.5 1.2 3.6 137 chrX 18896517 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-375 2189 chrX 18921930 18921960 chrX 18922010 18922039 5 78 2.0 3.0 2.5 1.4 109 chrX 18921930 intergenic not near genes chrX 18921984 intergenic not near genes chrX 18922039 intergenic not near genes chrX_5_18920001 chrX_18920001 RAL-375 2190 chrX 18947501 18947535 chrX 18947594 18947628 11 92 2.0 2.5 2.2 3.4 127 chrX 18947501 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947628 intron CG43759 + chrX_11_18945001 chrX_18945001 RAL-375 2191 chrX 19014359 19014395 chrX 19014438 19014474 10 74 2.5 3.0 2.8 2.6 115 chrX 19014359 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014474 intron CG43759 + chrX_10_19010001 chrX_19010001 RAL-375 2192 chrX 19020603 19020618 chrX 19020681 19020696 6 78 0.0 2.5 1.2 2.7 93 chrX 19020603 intron CG43759 + chrX 19020650 intron CG43759 + chrX 19020696 intron CG43759 + chrX_6_19020001 chrX_19020001 RAL-375 2193 chrX 19060409 19060438 chrX 19065193 19065220 Doc 6 4783 3.5 4.5 4.0 1.2 4811 chrX 19060409 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065220 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-375 2194 chrX 19080335 19080356 chrX 19080440 19080462 8 106 3.0 3.5 3.2 1.9 127 chrX 19080335 intergenic not near genes chrX 19080398 intergenic not near genes chrX 19080462 intergenic not near genes chrX_8_19080001 chrX_19080001 RAL-375 2195 chrX 19099655 19099675 chrX 19099738 19099758 6 83 4.0 1.5 2.8 1.6 103 chrX 19099655 intergenic not near genes chrX 19099706 intergenic not near genes chrX 19099758 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-375 2196 chrX 19124446 19124463 chrX 19124531 19124551 4 87 0.0 3.0 1.5 1.6 105 chrX 19124446 intergenic CG15882 - chrX 19124498 intergenic CG15882 - chrX 19124551 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-375 2197 chrX 19125698 19125720 chrX 19125827 19125849 9 128 3.5 6.0 4.8 1.6 151 chrX 19125698 intron tgy - chrX 19125774 intron tgy - chrX 19125849 intron tgy - chrX_9_19125001 chrX_19125001 RAL-375 2198 chrX 13057298 13057300 chrX 19242812 19242814 26 6185514 9.0 13.0 11.0 2.2 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_26_16150001 chrX_16150001 RAL-375 2199 chrX 19339741 19339769 chrX 19339817 19339845 6 76 1.0 1.5 1.2 2.7 104 chrX 19339741 intron nAChRalpha7 - chrX 19339793 intron nAChRalpha7 - chrX 19339845 intron nAChRalpha7 - chrX_6_19335001 chrX_19335001 RAL-375 2200 chrX 19356988 19357018 chrX 19358429 19358458 NOF 5 1441 2.0 0.0 1.0 2.5 1470 chrX 19356988 intron kek5 + chrX 19357723 intron kek5 + chrX 19358458 intron kek5 + chrX_5_19355001 chrX_19355001 RAL-375 2201 chrX 19461167 19461171 chrX 19461238 19461267 4 84 2.0 1.5 1.8 1.4 100 chrX 19461167 intron kek5 + chrX 19461217 intron kek5 + chrX 19461267 intron kek5 + chrX_4_19460001 chrX_19460001 RAL-375 2202 chrX 19472126 19472147 chrX 19472695 19472717 jockey 5 570 3.5 3.5 3.5 1.1 591 chrX 19472126 intergenic kek5 + chrX 19472422 intergenic not near genes chrX 19472717 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-375 2203 chrX 19500560 19500751 chrX 19500637 19500838 27 81 0.0 1.5 0.8 15.0 278 chrX 19500560 intron,intron CG14200 +,Pfrx + chrX 19500699 intron,intron CG14200 +,Pfrx + chrX 19500838 intron,intron CG14200 +,Pfrx + chrX_27_19500001 chrX_19500001 RAL-375 2204 chrX 19593960 19593978 chrX 19594045 19594063 4 85 3.0 3.0 3.0 1.0 103 chrX 19593960 exon CG14205 + chrX 19594012 intron CG14205 + chrX 19594063 intron CG14205 + chrX_4_19590001 chrX_19590001 RAL-375 2205 chrX 19662032 19662057 chrX 19662255 19662279 7 222 4.0 3.0 3.5 1.6 247 chrX 19662032 intron CG14223 - chrX 19662156 intron CG14223 - chrX 19662279 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-375 2206 chrX 19689406 19689439 chrX 19689483 19689515 10 77 2.0 1.5 1.8 3.6 109 chrX 19689406 intergenic Mer -,CG14227 - chrX 19689460 intergenic Mer - chrX 19689515 intergenic Mer - chrX_10_19685001 chrX_19685001 RAL-375 2207 chrX 19693752 19693784 chrX 19693837 19693869 6 85 3.0 0.5 1.8 2.1 117 chrX 19693752 intergenic CG14229 -,Mer - chrX 19693810 intergenic CG14229 -,Mer - chrX 19693869 intergenic CG14229 -,Mer - chrX_6_19690001 chrX_19690001 RAL-375 2208 chrX 19710093 19710104 chrX 19711861 19711887 S-element 5 1781 2.0 4.5 3.2 1.2 1794 chrX 19710093 intron meso18E - chrX 19710990 intron meso18E - chrX 19711887 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-375 2209 chrX 19756142 19756153 chrX 19756221 19756240 5 85 2.0 0.0 1.0 2.5 98 chrX 19756142 intron Pmp70 + chrX 19756191 intron Pmp70 + chrX 19756240 intron Pmp70 + chrX_5_19755001 chrX_19755001 RAL-375 2210 chrX 19881471 19881484 chrX 19881550 19881565 6 80 1.5 5.0 3.2 1.4 94 chrX 19881471 intron Hers + chrX 19881518 intron Hers + chrX 19881565 intron Hers + chrX_6_19880001 chrX_19880001 RAL-375 2211 chrX 19897379 19897416 chrX 19897456 19897493 4 77 2.5 3.0 2.8 1.1 114 chrX 19897379 intron Hers + chrX 19897436 intron Hers + chrX 19897493 intron Hers + chrX_4_19895001 chrX_19895001 RAL-375 2212 chrX 19983878 19983893 chrX 19983958 19983973 6 80 1.5 2.0 1.8 2.1 95 chrX 19983878 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19983973 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-375 2213 chrX 20041533 20041567 chrX 20041613 20041647 8 80 2.5 0.0 1.2 3.6 114 chrX 20041533 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041647 intron Dop2R - chrX_8_20040001 chrX_20040001 RAL-375 2214 chrX 20052786 20052809 chrX 20052870 20052893 10 82 3.0 1.0 2.0 3.3 107 chrX 20052786 intron Dop2R - chrX 20052840 intron Dop2R - chrX 20052893 intron Dop2R - chrX_10_20050001 chrX_20050001 RAL-375 2215 chrX 20065803 20065832 chrX 20065882 20065909 7 78 0.5 2.0 1.2 3.2 106 chrX 20065803 intergenic not near genes chrX 20065856 intergenic not near genes chrX 20065909 intergenic not near genes chrX_7_20065001 chrX_20065001 RAL-375 2216 chrX 20097038 20097063 chrX 20097221 20097246 10 183 4.0 1.5 2.8 2.6 208 chrX 20097038 intergenic not near genes chrX 20097142 intergenic not near genes chrX 20097246 intergenic not near genes chrX_10_20095001 chrX_20095001 RAL-375 2217 chrX 20124090 20124106 chrX 20124229 20124244 7 139 2.5 2.5 2.5 2.0 154 chrX 20124090 intron CG34331 + chrX 20124167 intron CG34331 + chrX 20124244 intron CG34331 + chrX_7_20120001 chrX_20120001 RAL-375 2218 chrX 20126889 20126907 chrX 20126967 20126985 5 78 3.0 1.0 2.0 1.7 96 chrX 20126889 intergenic not near genes chrX 20126937 intergenic not near genes chrX 20126985 intergenic not near genes chrX_5_20125001 chrX_20125001 RAL-375 2219 chrX 20133161 20133176 chrX 20133274 20133287 4 112 1.0 2.0 1.5 1.6 126 chrX 20133161 intergenic CG15322 + chrX 20133224 intergenic CG15322 + chrX 20133287 intergenic CG15322 + chrX_4_20130001 chrX_20130001 RAL-375 2220 chrX 20312884 20312903 chrX 20312962 20312979 8 78 3.0 3.0 3.0 2.0 95 chrX 20312884 intron CG1504 - chrX 20312932 intron CG1504 - chrX 20312979 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-375 2221 chrX 20374104 20374122 chrX 20374180 20374198 5 76 1.0 2.0 1.5 2.0 94 chrX 20374104 intergenic not near genes chrX 20374151 intergenic not near genes chrX 20374198 intergenic not near genes chrX_5_20370001 chrX_20370001 RAL-375 2222 chrX 20377325 20377345 chrX 20378791 20378812 hobo 9 1466 5.0 4.5 4.8 1.6 1487 chrX 20377325 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378812 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-375 2223 chrX 20383810 20383827 chrX 20383893 20383928 7 96 1.0 4.0 2.5 2.0 118 chrX 20383810 intergenic not near genes chrX 20383869 intergenic not near genes chrX 20383928 intergenic not near genes chrX_7_20380001 chrX_20380001 RAL-375 2224 chrX 20384262 20384283 chrX 20384345 20384366 4 83 1.0 2.0 1.5 1.6 104 chrX 20384262 intergenic not near genes chrX 20384314 intergenic not near genes chrX 20384366 intergenic not near genes chrX_4_20380001 chrX_20380001 RAL-375 2225 chrX 20443169 20443205 chrX 20443245 20443281 6 76 3.5 1.0 2.2 1.9 112 chrX 20443169 exon CG1695 + chrX 20443225 intron CG1695 + chrX 20443281 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-375 2226 chrX 20468012 20468041 chrX 20468101 20468130 8 89 2.0 0.0 1.0 4.0 118 chrX 20468012 intron GstT3 + chrX 20468071 intron GstT3 + chrX 20468130 intron GstT3 + chrX_8_20465001 chrX_20465001 RAL-375 2227 chrX 20504124 20504141 chrX 20505645 20505662 transib2 6 1520 4.0 3.5 3.8 1.2 1538 chrX 20504124 intron RhoGAP19D - chrX 20504893 intron RhoGAP19D - chrX 20505662 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-375 2228 chrX 20517246 20517258 chrX 20517332 20517344 5 86 4.0 0.5 2.2 1.6 98 chrX 20517246 intron Tak1 - chrX 20517295 intron Tak1 - chrX 20517344 intron Tak1 - chrX_5_20515001 chrX_20515001 RAL-375 2229 chrX 20531760 20531796 chrX 20531859 20531895 9 99 1.5 2.0 1.8 3.2 135 chrX 20531760 intergenic not near genes chrX 20531828 intergenic not near genes chrX 20531895 intergenic not near genes chrX_9_20530001 chrX_20530001 RAL-375 2230 chrX 20546549 20546567 chrX 20546715 20546733 4 166 0.0 1.0 0.5 2.7 184 chrX 20546549 intron RunxB + chrX 20546641 intron RunxB + chrX 20546733 intron RunxB + chrX_4_20545001 chrX_20545001 RAL-375 2231 chrX 20662316 20662330 chrX 20662399 20662411 5 82 3.0 0.0 1.5 2.0 95 chrX 20662316 intron CG1835 + chrX 20662364 intron CG1835 + chrX 20662411 intron CG1835 + chrX_5_20660001 chrX_20660001 RAL-375 2232 chrX 20791355 20791388 chrX 20791432 20791465 8 75 2.0 2.5 2.2 2.5 110 chrX 20791355 intron shakB - chrX 20791410 intron shakB - chrX 20791465 intron shakB - chrX_8_20790001 chrX_20790001 RAL-375 2233 chrX 20814193 20814224 chrX 20814287 20814317 7 91 3.5 2.5 3.0 1.8 124 chrX 20814193 intron shakB - chrX 20814255 intron shakB - chrX 20814317 intron shakB - chrX_7_20810001 chrX_20810001 RAL-375 2234 chrX 20836729 20836756 chrX 20844331 20844358 roo 4 7602 3.5 5.0 4.2 0.8 7629 chrX 20836729 intron shakB - chrX 20840544 intron shakB - chrX 20844358 intron shakB - chrX_4_20840001 chrX_20840001 RAL-375 2235 chrX 20940722 20940751 chrX 20942190 20942220 hobo 16 1468 6.0 3.5 4.8 2.8 1498 chrX 20940722 intergenic not near genes chrX 20941471 intergenic not near genes chrX 20942220 intergenic not near genes chrX_16_20940001 chrX_20940001 RAL-375 2236 chrX 21008667 21008687 chrX 21008753 21008758 5 84 2.0 2.0 2.0 1.7 91 chrX 21008667 intergenic not near genes chrX 21008712 intergenic not near genes chrX 21008758 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-375 2237 chrX 21009825 21009841 chrX 21009933 21009949 5 107 0.5 2.5 1.5 2.0 124 chrX 21009825 intergenic not near genes chrX 21009887 intergenic not near genes chrX 21009949 intergenic not near genes chrX_5_21005001 chrX_21005001 RAL-375 2238 chrX 21076329 21076340 chrX 21076408 21076419 4 79 4.5 2.5 3.5 0.9 90 chrX 21076329 intron bves + chrX 21076374 intron bves + chrX 21076419 intron bves + chrX_4_21075001 chrX_21075001 RAL-375 2239 chrX 21076346 21076357 chrX 21076406 21076436 6 76 2.0 2.5 2.2 1.9 90 chrX 21076346 intron bves + chrX 21076391 intron bves + chrX 21076436 intron bves + chrX_6_21075001 chrX_21075001 RAL-375 2240 chrX 21077600 21077617 chrX 21077686 21077706 4 88 2.5 1.0 1.8 1.4 106 chrX 21077600 intron bves + chrX 21077653 intron bves + chrX 21077706 intron bves + chrX_4_21075001 chrX_21075001 RAL-375 2241 chrX 21086130 21086158 chrX 21087159 21087187 jockey 4 1028 1.5 3.0 2.2 1.2 1057 chrX 21086130 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087187 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-375 2242 chrX 21088040 21088073 chrX 21088172 21088187 9 130 1.0 1.5 1.2 4.1 147 chrX 21088040 intergenic not near genes chrX 21088114 intergenic not near genes chrX 21088187 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-375 2243 chrX 21345120 21345147 chrX 21345201 21345227 12 80 1.0 1.5 1.2 5.5 107 chrX 21345120 intergenic fliI +,dod + chrX 21345174 intergenic fliI +,dod + chrX 21345227 intergenic dod +,fliI + chrX_12_21345001 chrX_21345001 RAL-375 2244 chrX 21428335 21428369 chrX 21428525 21428539 8 187 1.0 1.5 1.2 3.6 204 chrX 21428335 intron CG42343 - chrX 21428437 intron CG42343 - chrX 21428539 intron CG42343 - chrX_8_21425001 chrX_21425001 RAL-375 2245 chrX 21458699 21458723 chrX 21464135 21464159 Ivk 10 5436 3.5 5.0 4.2 1.9 5460 chrX 21458699 intergenic not near genes chrX 21461429 intergenic not near genes chrX 21464159 intergenic not near genes chrX_10_21460001 chrX_21460001 RAL-375 2246 chrX 21492273 21492301 chrX 21492386 21492412 6 112 2.0 0.5 1.2 2.7 139 chrX 21492273 intergenic not near genes chrX 21492342 intergenic not near genes chrX 21492412 intergenic not near genes chrX_6_21490001 chrX_21490001 RAL-375 2247 chrX 21500561 21500589 chrX 21500762 21500786 6 200 0.0 2.0 1.0 3.0 225 chrX 21500561 intron CR45082 - chrX 21500674 intron CR45082 - chrX 21500786 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-375 2248 chrX 21516995 21517020 chrX 21517065 21517099 6 77 5.0 4.0 4.5 1.1 104 chrX 21516995 intron CR45082 - chrX 21517047 intron CR45082 - chrX 21517099 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-375 2249 chrX 21668257 21668289 chrX 21668342 21668374 17 84 6.5 2.5 4.5 3.1 117 chrX 21668257 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668374 intergenic not near genes chrX_17_21665001 chrX_21665001 RAL-375 2250 chrX 22259783 22259789 chrX 22382681 22382684 5 122898 55.5 9.5 32.5 0.1 122901 chrX 22259783 intergenic not near genes chrX 22321234 intergenic not near genes chrX 22382684 intergenic not near genes chrX_5_22320001 chrX_22320001 RAL-375 2251 chrX 22448278 22448282 chrX 22448417 22448420 4 139 4.0 1.0 2.5 1.1 142 chrX 22448278 intron CG14615 - chrX 22448349 intron CG14615 - chrX 22448420 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-375 2252 chrX 22522637 22522657 chrX 22525457 22525477 NOF 5 2819 3.5 0.0 1.8 1.8 2840 chrX 22522637 intron CG17600 + chrX 22524057 intron CG17600 + chrX 22525477 intron CG17600 + chrX_5_22520001 chrX_22520001 RAL-375 2253 chrX 22564561 22564572 chrX 22575136 22575147 jockey 4 10574 9.0 4.0 6.5 0.5 10586 chrX 22564561 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575147 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-375 2254 chrX 22628123 22628154 chrX 22629888 22629919 6 1764 3.0 1.0 2.0 2.0 1796 chrX 22628123 intron Cda4 - chrX 22629021 intron Cda4 - chrX 22629919 intron Cda4 - chrX_6_22625001 chrX_22625001 RAL-375 2255 chrX 22660569 22660591 chrX 22660653 22660675 9 83 7.0 0.0 3.5 2.0 106 chrX 22660569 intron CR44997 + chrX 22660622 intron CR44997 + chrX 22660675 intron CR44997 + chrX_9_22660001 chrX_22660001 RAL-375 2256 chrX 22661979 22662009 chrX 22662078 22662092 8 97 0.0 0.5 0.2 6.7 113 chrX 22661979 intron CR44997 + chrX 22662036 intron CR44997 + chrX 22662092 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-375 2257 chrX 22697500 22697523 chrX 22701797 22701820 Juan 10 4296 5.5 3.0 4.2 1.9 4320 chrX 22697500 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701820 intron CR44997 + chrX_10_22695001 chrX_22695001 RAL-375 2258 chrX 22764375 22764400 chrX 22764471 22764496 8 96 1.0 1.5 1.2 3.6 121 chrX 22764375 intron CR44997 + chrX 22764436 intron CR44997 + chrX 22764496 intron CR44997 + chrX_8_22760001 chrX_22760001 RAL-375 2259 chrX 22771511 22771535 chrX 22774802 22774822 297 4 3289 3.5 3.5 3.5 0.9 3311 chrX 22771511 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774822 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-375 2260 chrX 22784084 22784102 chrX 22784164 22784185 5 82 0.5 1.5 1.0 2.5 101 chrX 22784084 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784185 intron CR44997 + chrX_5_22780001 chrX_22780001 RAL-375 2261 chrX 22811993 22812005 chrX 22816764 22816776 F-element 5 4772 5.0 2.5 3.8 1.0 4783 chrX 22811993 intergenic CG12446 - chrX 22814384 intergenic not near genes chrX 22816776 intergenic not near genes chrX_5_22810001 chrX_22810001 RAL-375 2262 chrX 22824252 22824449 chrX 22824369 22824563 6 127 2.0 2.0 2.0 2.0 311 chrX 22824252 intergenic fog - chrX 22824408 3` UTR fog - chrX 22824563 3` UTR fog - chrX_6_22820001 chrX_22820001 RAL-375 2263 chrX 22895726 22895759 chrX 22895842 22895844 8 112 1.0 2.0 1.5 3.2 118 chrX 22895726 intergenic not near genes chrX 22895785 intergenic not near genes chrX 22895844 intergenic not near genes chrX_8_22895001 chrX_22895001 RAL-375 2264 chrX 22996322 22996336 chrX 23003554 23003568 roo 4 7231 4.5 8.0 6.2 0.6 7246 chrX 22996322 intron,intron stnA -,stnB - chrX 22999945 intron,intron stnA -,stnB - chrX 23003568 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-375 2265 chrX 23036385 23036410 chrX 23037786 23037811 pogo 8 1400 4.0 1.5 2.8 2.1 1426 chrX 23036385 intron CG12061 + chrX 23037098 intron CG12061 + chrX 23037811 intron CG12061 + chrX_8_23035001 chrX_23035001 RAL-375 2266 chrY 1419916 1419932 chrY 1420170 1420186 invader2 5 254 7.5 4.0 5.8 0.7 270 chrY 1419916 intergenic not near genes chrY 1420051 intergenic not near genes chrY 1420186 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-375