SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47450 47484 chr2L 52572 52609 jockey 7 5121 7.5 3.0 5.2 1.1 5159 chr2L 47450 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52609 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-374 2 chr2L 89343 89358 chr2L 89771 89779 5 426 8.0 1.0 4.5 0.9 436 chr2L 89343 intergenic not near genes chr2L 89561 intergenic not near genes chr2L 89779 intergenic not near genes chr2L_5_85001 chr2L_85001 RAL-374 3 chr2L 89361 89380 chr2L 89762 89808 8 419 6.0 1.0 3.5 1.8 447 chr2L 89361 intergenic not near genes chr2L 89584 intergenic not near genes chr2L 89808 intergenic not near genes chr2L_8_85001 chr2L_85001 RAL-374 4 chr2L 263279 263318 chr2L 263445 263484 6 166 1.0 1.0 1.0 3.0 205 chr2L 263279 intron,3` UTR CG3645 -,CG17075 - chr2L 263382 intron,3` UTR CG3645 -,CG17075 - chr2L 263484 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-374 5 chr2L 347868 347918 chr2L 355388 355434 blood 11 7519 3.0 3.5 3.2 2.6 7566 chr2L 347868 3` UTR Plc21C + chr2L 351651 intron Plc21C + chr2L 355434 3` UTR Plc21C + chr2L_11_350001 chr2L_350001 RAL-374 6 chr2L 371432 371446 chr2L 371531 371545 5 99 1.5 7.0 4.2 1.0 113 chr2L 371432 intergenic not near genes chr2L 371488 intergenic not near genes chr2L 371545 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-374 7 chr2L 552867 552906 chr2L 553134 553142 7 258 1.0 3.0 2.0 2.3 275 chr2L 552867 intergenic Ets21C - chr2L 553004 intergenic not near genes chr2L 553142 intergenic not near genes chr2L_7_550001 chr2L_550001 RAL-374 8 chr2L 590319 590602 chr2L 590431 590722 8 113 6.0 4.5 5.2 1.3 403 chr2L 590319 intron Gsc - chr2L 590520 intron Gsc - chr2L 590722 intron Gsc - chr2L_8_590001 chr2L_590001 RAL-374 9 chr2L 590623 590641 chr2L 590730 590758 11 116 3.0 4.0 3.5 2.4 135 chr2L 590623 intron Gsc - chr2L 590690 intron Gsc - chr2L 590758 intron Gsc - chr2L_11_590001 chr2L_590001 RAL-374 10 chr2L 609303 609324 chr2L 609423 609459 4 128 3.0 5.0 4.0 0.8 156 chr2L 609303 intergenic CR43649 - chr2L 609381 intergenic CR43649 - chr2L 609459 intergenic CR43649 - chr2L_4_605001 chr2L_605001 RAL-374 11 chr2L 666272 666308 chr2L 666359 666404 8 92 0.5 0.0 0.2 6.7 132 chr2L 666272 intron ds - chr2L 666338 intron ds - chr2L 666404 intron ds - chr2L_8_665001 chr2L_665001 RAL-374 12 chr2L 770453 770491 chr2L 772244 772292 Bari1 8 1796 2.0 2.5 2.2 2.5 1839 chr2L 770453 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772292 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-374 13 chr2L 922450 922485 chr2L 922549 922586 10 100 3.0 4.0 3.5 2.2 136 chr2L 922450 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922586 intergenic CG4341 + chr2L_10_920001 chr2L_920001 RAL-374 14 chr2L 996709 996718 chr2L 1005824 1005833 roo 4 9115 0.5 2.5 1.5 1.6 9124 chr2L 996709 intergenic not near genes chr2L 1001271 intergenic not near genes chr2L 1005833 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-374 15 chr2L 1035538 1035587 chr2L 1035634 1035684 14 94 1.5 3.0 2.2 4.4 146 chr2L 1035538 intron IA-2 - chr2L 1035611 intron IA-2 - chr2L 1035684 intron IA-2 - chr2L_14_1035001 chr2L_1035001 RAL-374 16 chr2L 1041067 1041106 chr2L 1041236 1041275 9 169 1.5 1.0 1.2 4.1 208 chr2L 1041067 intron IA-2 - chr2L 1041171 intron IA-2 - chr2L 1041275 intron IA-2 - chr2L_9_1040001 chr2L_1040001 RAL-374 17 chr2L 1066082 1066127 chr2L 1066174 1066178 15 96 4.5 4.5 4.5 2.7 96 chr2L 1066082 intron S - chr2L 1066130 intron S - chr2L 1066178 intron S - chr2L_15_1065001 chr2L_1065001 RAL-374 18 chr2L 1220107 1220161 chr2L 1227593 1227645 blood 9 7484 1.0 1.5 1.2 4.1 7538 chr2L 1220107 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227645 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-374 19 chr2L 1261139 1261256 chr2L 1261241 1261335 4 96 0.0 0.0 0.0 4.0 196 chr2L 1261139 intron robo3 + chr2L 1261237 intron robo3 + chr2L 1261335 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-374 20 chr2L 1336952 1336956 chr2L 1337212 1337218 4 262 0.5 5.5 3.0 1.0 266 chr2L 1336952 intergenic not near genes chr2L 1337085 intergenic not near genes chr2L 1337218 intergenic not near genes chr2L_4_1335001 chr2L_1335001 RAL-374 21 chr2L 1343522 1343549 chr2L 1343730 1343761 7 211 3.0 2.5 2.8 1.8 239 chr2L 1343522 exon CG33922 - chr2L 1343642 intron CG33922 - chr2L 1343761 exon CG33922 - chr2L_7_1340001 chr2L_1340001 RAL-374 22 chr2L 1443326 1443359 chr2L 1443411 1443440 6 89 0.0 1.5 0.8 3.3 114 chr2L 1443326 3` UTR CG43402 + chr2L 1443383 3` UTR CG43402 + chr2L 1443440 3` UTR CG43402 + chr2L_6_1440001 chr2L_1440001 RAL-374 23 chr2L 1562351 1562405 chr2L 1562458 1562512 8 107 2.0 0.5 1.2 3.6 161 chr2L 1562351 intron haf + chr2L 1562432 intron haf + chr2L 1562512 intron haf + chr2L_8_1560001 chr2L_1560001 RAL-374 24 chr2L 1570672 1570694 chr2L 1573564 1573584 F-element 4 2892 4.0 1.0 2.5 1.1 2912 chr2L 1570672 intron haf + chr2L 1572128 intron haf + chr2L 1573584 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-374 25 chr2L 1590946 1590991 chr2L 1591041 1591084 9 93 3.0 1.5 2.2 2.8 138 chr2L 1590946 intron haf + chr2L 1591015 intron haf + chr2L 1591084 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-374 26 chr2L 1635401 1635405 chr2L 1635557 1635561 4 156 2.5 4.5 3.5 0.9 160 chr2L 1635401 intergenic not near genes chr2L 1635481 intergenic not near genes chr2L 1635561 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-374 27 chr2L 1635406 1635426 chr2L 1635547 1635564 5 149 1.5 3.5 2.5 1.4 158 chr2L 1635406 intergenic not near genes chr2L 1635485 intergenic not near genes chr2L 1635564 intergenic not near genes chr2L_5_1635001 chr2L_1635001 RAL-374 28 chr2L 1678939 1678999 chr2L 1686441 1686484 blood 4 7498 0.0 4.5 2.2 1.2 7545 chr2L 1678939 intron chinmo + chr2L 1682712 intron chinmo + chr2L 1686484 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-374 29 chr2L 1883398 1883441 chr2L 1884001 1884040 7 602 3.5 2.5 3.0 1.8 642 chr2L 1883398 intron CG15358 - chr2L 1883719 intron CG15358 - chr2L 1884040 exon CG15358 - chr2L_7_1880001 chr2L_1880001 RAL-374 30 chr2L 1999204 1999240 chr2L 1999303 1999345 6 104 0.5 4.5 2.5 1.7 141 chr2L 1999204 intron CG33543 - chr2L 1999274 intron CG33543 - chr2L 1999345 intron CG33543 - chr2L_6_1995001 chr2L_1995001 RAL-374 31 chr2L 2002927 2002953 chr2L 2003098 2003122 4 168 3.0 3.5 3.2 1.0 195 chr2L 2002927 intron,intron CG33543 -,CR43464 + chr2L 2003024 intron,intron CG33543 -,CR43464 + chr2L 2003122 intron,intron CG33543 -,CR43464 + chr2L_4_2000001 chr2L_2000001 RAL-374 32 chr2L 2084389 2084428 chr2L 2085354 2085390 4 963 4.0 3.0 3.5 0.9 1001 chr2L 2084389 intron,5` UTR dpr3 -,CR44055 + chr2L 2084890 intron dpr3 - chr2L 2085390 intron dpr3 - chr2L_4_2080001 chr2L_2080001 RAL-374 33 chr2L 2174068 2174110 chr2L 2174213 2174255 8 145 3.0 3.5 3.2 1.9 187 chr2L 2174068 intron aop - chr2L 2174162 intron aop - chr2L 2174255 intron aop - chr2L_8_2170001 chr2L_2170001 RAL-374 34 chr2L 2256453 2256477 chr2L 2256553 2256577 8 98 2.0 4.0 3.0 2.0 124 chr2L 2256453 intergenic not near genes chr2L 2256515 intergenic not near genes chr2L 2256577 intergenic not near genes chr2L_8_2255001 chr2L_2255001 RAL-374 35 chr2L 2260800 2260836 chr2L 2260906 2260929 9 102 3.0 2.5 2.8 2.4 129 chr2L 2260800 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260929 intergenic not near genes chr2L_9_2260001 chr2L_2260001 RAL-374 36 chr2L 2290575 2290614 chr2L 2290670 2290709 5 94 1.0 3.0 2.0 1.7 134 chr2L 2290575 exon robl22E - chr2L 2290642 5` UTR robl22E - chr2L 2290709 5` UTR robl22E - chr2L_5_2290001 chr2L_2290001 RAL-374 37 chr2L 2311051 2311076 chr2L 2311167 2311192 8 115 1.5 2.0 1.8 2.9 141 chr2L 2311051 intron CG9967 - chr2L 2311122 intron CG9967 - chr2L 2311192 intron CG9967 - chr2L_8_2310001 chr2L_2310001 RAL-374 38 chr2L 2317106 2317128 chr2L 2317297 2317319 4 191 10.0 13.5 11.8 0.3 213 chr2L 2317106 intron,intron CG9967 -,eys + chr2L 2317212 intron,intron CG9967 -,eys + chr2L 2317319 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-374 39 chr2L 2361880 2361895 chr2L 2361980 2361995 5 99 3.5 2.0 2.8 1.3 115 chr2L 2361880 intron Rab5 - chr2L 2361938 intron Rab5 - chr2L 2361995 intron Rab5 - chr2L_5_2360001 chr2L_2360001 RAL-374 40 chr2L 2372351 2372363 chr2L 2372457 2372469 5 105 5.0 3.5 4.2 1.0 118 chr2L 2372351 intergenic CG3609 - chr2L 2372410 intergenic CG3609 - chr2L 2372469 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-374 41 chr2L 2373814 2373847 chr2L 2374354 2374387 7 539 2.5 3.5 3.0 1.8 573 chr2L 2373814 intron CG3609 - chr2L 2374100 intron CG3609 - chr2L 2374387 intron CG3609 - chr2L_7_2370001 chr2L_2370001 RAL-374 42 chr2L 2447811 2447860 chr2L 2447911 2447960 14 100 3.5 5.0 4.2 2.7 149 chr2L 2447811 intron dpp + chr2L 2447886 intron dpp + chr2L 2447960 intron dpp + chr2L_14_2445001 chr2L_2445001 RAL-374 43 chr2L 2504206 2504235 chr2L 2504304 2504327 8 97 0.5 2.0 1.2 3.6 121 chr2L 2504206 intergenic not near genes chr2L 2504266 intergenic not near genes chr2L 2504327 intergenic not near genes chr2L_8_2500001 chr2L_2500001 RAL-374 44 chr2L 2565545 2565563 chr2L 2571638 2571656 297 9 6093 1.5 7.5 4.5 1.6 6111 chr2L 2565545 exon Cyp309a2 - chr2L 2568600 intron Cyp309a2 - chr2L 2571656 exon Cyp309a2 - chr2L_9_2565001 chr2L_2565001 RAL-374 45 chr2L 2614952 2614980 chr2L 2615582 2615610 4 630 2.5 4.5 3.5 0.9 658 chr2L 2614952 intergenic not near genes chr2L 2615281 intergenic not near genes chr2L 2615610 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-374 46 chr2L 2713498 2713542 chr2L 2713617 2713648 5 114 3.5 3.0 3.2 1.2 150 chr2L 2713498 intron CG31690 + chr2L 2713573 intron CG31690 + chr2L 2713648 intron CG31690 + chr2L_5_2710001 chr2L_2710001 RAL-374 47 chr2L 2804217 2804267 chr2L 2804325 2804376 11 106 4.5 2.0 3.2 2.6 159 chr2L 2804217 intergenic not near genes chr2L 2804296 intergenic not near genes chr2L 2804376 intergenic not near genes chr2L_11_2800001 chr2L_2800001 RAL-374 48 chr2L 2830402 2830414 chr2L 2830552 2830564 5 150 1.5 0.5 1.0 2.5 162 chr2L 2830402 intergenic Duox - chr2L 2830483 intergenic Duox - chr2L 2830564 intergenic Duox - chr2L_5_2830001 chr2L_2830001 RAL-374 49 chr2L 2937412 2937452 chr2L 2937508 2937546 4 96 1.5 0.5 1.0 2.0 134 chr2L 2937412 intron lilli + chr2L 2937479 intron lilli + chr2L 2937546 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-374 50 chr2L 3073020 3073055 chr2L 3078242 3078278 copia 14 5223 4.0 8.0 6.0 2.0 5258 chr2L 3073020 intron toc - chr2L 3075649 intron toc - chr2L 3078278 intron toc - chr2L_14_3075001 chr2L_3075001 RAL-374 51 chr2L 3108856 3108898 chr2L 3108947 3108995 9 95 2.0 3.5 2.8 2.4 139 chr2L 3108856 exon toc - chr2L 3108926 intron toc - chr2L 3108995 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-374 52 chr2L 3147264 3147304 chr2L 3147350 3147399 8 92 3.0 3.5 3.2 1.9 135 chr2L 3147264 3` UTR Mad - chr2L 3147332 3` UTR Mad - chr2L 3147399 3` UTR Mad - chr2L_8_3145001 chr2L_3145001 RAL-374 53 chr2L 3202732 3202768 chr2L 3210181 3210215 mdg1 9 7448 2.5 0.5 1.5 3.6 7483 chr2L 3202732 intergenic not near genes chr2L 3206474 intergenic not near genes chr2L 3210215 intergenic CR45336 + chr2L_9_3205001 chr2L_3205001 RAL-374 54 chr2L 3251477 3251527 chr2L 3259062 3259112 springer 8 7585 2.0 2.0 2.0 2.7 7635 chr2L 3251477 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259112 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-374 55 chr2L 3261499 3261511 chr2L 3261610 3261623 4 112 3.0 7.0 5.0 0.7 124 chr2L 3261499 intergenic CR45338 -,CR45337 - chr2L 3261561 intergenic CR45338 -,CR45337 - chr2L 3261623 intergenic CR45338 -,CR45337 - chr2L_4_3260001 chr2L_3260001 RAL-374 56 chr2L 3386219 3386267 chr2L 3386347 3386380 9 125 2.0 3.5 2.8 2.4 161 chr2L 3386219 intergenic not near genes chr2L 3386300 intergenic not near genes chr2L 3386380 intergenic CR45301 - chr2L_9_3385001 chr2L_3385001 RAL-374 57 chr2L 3388578 3388625 chr2L 3388839 3388885 pogo 8 261 3.5 2.0 2.8 2.1 307 chr2L 3388578 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388885 intergenic CG42460 -,CR44791 + chr2L_8_3385001 chr2L_3385001 RAL-374 58 chr2L 3437153 3437162 chr2L 3437256 3437265 6 103 0.0 3.5 1.8 2.1 112 chr2L 3437153 intergenic not near genes chr2L 3437209 intergenic not near genes chr2L 3437265 intergenic not near genes chr2L_6_3435001 chr2L_3435001 RAL-374 59 chr2L 3466429 3466462 chr2L 3468160 3468192 9 1732 20.0 29.5 24.8 0.3 1763 chr2L 3466429 intron Pdsw + chr2L 3467310 3` UTR Pdsw + chr2L 3468192 exon CG3238 - chr2L_9_3465001 chr2L_3465001 RAL-374 60 chr2L 3486077 3486120 chr2L 3486191 3486233 7 114 1.5 1.5 1.5 2.8 156 chr2L 3486077 intron CG15414 - chr2L 3486155 intron CG15414 - chr2L 3486233 intron CG15414 - chr2L_7_3485001 chr2L_3485001 RAL-374 61 chr2L 3508431 3508453 chr2L 3508527 3508549 5 93 1.0 9.5 5.2 0.8 118 chr2L 3508431 intergenic CR45299 +,tim - chr2L 3508490 intergenic CR45299 +,tim - chr2L 3508549 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-374 62 chr2L 3603321 3603335 chr2L 3603417 3603430 7 95 4.5 2.5 3.5 1.6 109 chr2L 3603321 intergenic not near genes chr2L 3603376 intergenic not near genes chr2L 3603430 intergenic not near genes chr2L_7_3600001 chr2L_3600001 RAL-374 63 chr2L 3603340 3603362 chr2L 3603413 3603459 8 88 3.0 2.0 2.5 2.3 119 chr2L 3603340 intergenic not near genes chr2L 3603400 intergenic not near genes chr2L 3603459 intergenic not near genes chr2L_8_3600001 chr2L_3600001 RAL-374 64 chr2L 3649777 3649807 chr2L 3654998 3655028 copia 7 5222 0.0 3.0 1.5 2.8 5251 chr2L 3649777 intron for - chr2L 3652402 intron for - chr2L 3655028 intron for - chr2L_7_3650001 chr2L_3650001 RAL-374 65 chr2L 3663290 3663334 chr2L 3663388 3663431 9 98 3.0 3.0 3.0 2.2 141 chr2L 3663290 5` UTR CG34340 + chr2L 3663360 intron CG34340 + chr2L 3663431 intron CG34340 + chr2L_9_3660001 chr2L_3660001 RAL-374 66 chr2L 3819016 3819055 chr2L 3819118 3819157 7 101 3.0 0.0 1.5 2.8 141 chr2L 3819016 intergenic CR44077 + chr2L 3819086 intergenic not near genes chr2L 3819157 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-374 67 chr2L 3831828 3831861 chr2L 3831929 3831961 7 101 1.5 5.0 3.2 1.7 133 chr2L 3831828 intergenic not near genes chr2L 3831894 intergenic not near genes chr2L 3831961 intergenic not near genes chr2L_7_3830001 chr2L_3830001 RAL-374 68 chr2L 3891874 3891922 chr2L 3891979 3892026 9 104 3.0 3.5 3.2 2.1 152 chr2L 3891874 intron capu - chr2L 3891950 intron capu - chr2L 3892026 intron capu - chr2L_9_3890001 chr2L_3890001 RAL-374 69 chr2L 3947520 3947539 chr2L 3947804 3947823 4 283 0.0 4.0 2.0 1.3 303 chr2L 3947520 intron fred - chr2L 3947672 intron fred - chr2L 3947823 intron fred - chr2L_4_3945001 chr2L_3945001 RAL-374 70 chr2L 4037786 4037807 chr2L 4037893 4037910 5 106 1.0 1.0 1.0 2.5 124 chr2L 4037786 intron ed + chr2L 4037848 intron ed + chr2L 4037910 intron ed + chr2L_5_4035001 chr2L_4035001 RAL-374 71 chr2L 4150635 4150658 chr2L 4150704 4150758 7 88 0.0 1.0 0.5 4.7 123 chr2L 4150635 exon CG2955 + chr2L 4150696 exon CG2955 + chr2L 4150758 exon CG2955 + chr2L_7_4150001 chr2L_4150001 RAL-374 72 chr2L 4155621 4155638 chr2L 4155852 4155899 4 253 0.0 0.5 0.2 3.3 278 chr2L 4155621 intergenic not near genes chr2L 4155760 intergenic not near genes chr2L 4155899 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-374 73 chr2L 4184468 4184505 chr2L 4184807 4184843 4 338 1.0 2.5 1.8 1.4 375 chr2L 4184468 intergenic not near genes chr2L 4184656 intergenic not near genes chr2L 4184843 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-374 74 chr2L 4388840 4388854 chr2L 4388947 4388961 4 106 4.0 1.5 2.8 1.1 121 chr2L 4388840 exon Tps1 + chr2L 4388900 intron Tps1 + chr2L 4388961 intron Tps1 + chr2L_4_4385001 chr2L_4385001 RAL-374 75 chr2L 4601688 4601730 chr2L 4609146 4609191 mdg1 14 7460 5.5 1.5 3.5 3.1 7503 chr2L 4601688 intron dp - chr2L 4605440 intron dp - chr2L 4609191 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-374 76 chr2L 4661823 4661854 chr2L 4669423 4669454 opus 4 7600 1.5 7.0 4.2 0.8 7631 chr2L 4661823 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669454 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-374 77 chr2L 4793289 4793322 chr2L 4793604 4793637 5 315 0.5 2.5 1.5 2.0 348 chr2L 4793289 intron CG15630 - chr2L 4793463 intron CG15630 - chr2L 4793637 exon CG15630 - chr2L_5_4790001 chr2L_4790001 RAL-374 78 chr2L 4819498 4819515 chr2L 4819621 4819656 8 136 1.5 2.5 2.0 2.7 158 chr2L 4819498 intergenic not near genes chr2L 4819577 intergenic not near genes chr2L 4819656 intergenic not near genes chr2L_8_4815001 chr2L_4815001 RAL-374 79 chr2L 4856203 4856247 chr2L 4856422 4856455 15 214 2.0 5.0 3.5 3.3 252 chr2L 4856203 intron pog + chr2L 4856329 intron pog + chr2L 4856455 intron pog + chr2L_15_4855001 chr2L_4855001 RAL-374 80 chr2L 4862264 4862307 chr2L 4862360 4862403 10 92 4.5 5.0 4.8 1.7 139 chr2L 4862264 intron pog + chr2L 4862334 intron pog + chr2L 4862403 intron pog + chr2L_10_4860001 chr2L_4860001 RAL-374 81 chr2L 4869448 4869498 chr2L 4869548 4869598 7 100 2.0 2.0 2.0 2.3 150 chr2L 4869448 intron pog + chr2L 4869523 intron pog + chr2L 4869598 intron pog + chr2L_7_4865001 chr2L_4865001 RAL-374 82 chr2L 4918155 4918193 chr2L 4923248 4923324 jockey 5 5108 4.5 0.5 2.5 1.4 5169 chr2L 4918155 intron hoe1 - chr2L 4920740 intron hoe1 - chr2L 4923324 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-374 83 chr2L 4929135 4929142 chr2L 4929239 4929247 5 105 4.5 4.0 4.2 1.0 112 chr2L 4929135 intron hoe1 - chr2L 4929191 intron hoe1 - chr2L 4929247 intron hoe1 - chr2L_5_4925001 chr2L_4925001 RAL-374 84 chr2L 4953499 4953529 chr2L 4953759 4953773 pogo 6 257 3.0 2.0 2.5 1.7 274 chr2L 4953499 intergenic Jon25Bii - chr2L 4953636 intergenic Jon25Bii - chr2L 4953773 intergenic not near genes chr2L_6_4950001 chr2L_4950001 RAL-374 85 chr2L 5117288 5117320 chr2L 5117390 5117421 8 101 2.0 4.5 3.2 1.9 133 chr2L 5117288 intron Msp300 + chr2L 5117354 intron Msp300 + chr2L 5117421 intron Msp300 + chr2L_8_5115001 chr2L_5115001 RAL-374 86 chr2L 5120965 5121002 chr2L 5121079 5121109 8 113 4.5 1.0 2.8 2.1 144 chr2L 5120965 intron Msp300 + chr2L 5121037 intron Msp300 + chr2L 5121109 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-374 87 chr2L 5242845 5242899 chr2L 5243055 5243079 11 204 1.5 2.5 2.0 3.7 234 chr2L 5242845 intron tkv - chr2L 5242962 intron tkv - chr2L 5243079 intron tkv - chr2L_11_5240001 chr2L_5240001 RAL-374 88 chr2L 5325637 5325655 chr2L 5325718 5325745 5 92 0.5 6.0 3.2 1.2 108 chr2L 5325637 intron Ncoa6 - chr2L 5325691 intron Ncoa6 - chr2L 5325745 intron Ncoa6 - chr2L_5_5325001 chr2L_5325001 RAL-374 89 chr2L 5342758 5342796 chr2L 5345158 5345195 Doc 5 2400 2.5 6.5 4.5 0.9 2437 chr2L 5342758 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345195 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-374 90 chr2L 5372612 5372656 chr2L 5372729 5372781 12 124 4.5 3.0 3.8 2.5 169 chr2L 5372612 intergenic not near genes chr2L 5372696 intergenic not near genes chr2L 5372781 intergenic not near genes chr2L_12_5370001 chr2L_5370001 RAL-374 91 chr2L 5615163 5615200 chr2L 5615262 5615299 7 99 2.5 1.5 2.0 2.3 136 chr2L 5615163 intron CG14010 - chr2L 5615231 intron,5` UTR CG14010 -,CR44795 + chr2L 5615299 intron,5` UTR CG14010 -,CR44795 + chr2L_7_5615001 chr2L_5615001 RAL-374 92 chr2L 5695843 5695881 chr2L 5695955 5695992 9 112 2.5 3.0 2.8 2.4 149 chr2L 5695843 intergenic not near genes chr2L 5695918 intergenic not near genes chr2L 5695992 intergenic not near genes chr2L_9_5695001 chr2L_5695001 RAL-374 93 chr2L 5758342 5758367 chr2L 5758584 5758611 6 248 2.0 5.5 3.8 1.2 269 chr2L 5758342 intron CG11030 + chr2L 5758476 intron CG11030 + chr2L 5758611 intron CG11030 + chr2L_6_5755001 chr2L_5755001 RAL-374 94 chr2L 5816177 5816185 chr2L 5816271 5816281 4 96 3.0 4.5 3.8 0.8 104 chr2L 5816177 intergenic not near genes chr2L 5816229 intergenic not near genes chr2L 5816281 intergenic not near genes chr2L_4_5815001 chr2L_5815001 RAL-374 95 chr2L 5816191 5816215 chr2L 5816264 5816311 7 93 3.5 4.0 3.8 1.5 120 chr2L 5816191 intergenic not near genes chr2L 5816251 intergenic not near genes chr2L 5816311 intergenic not near genes chr2L_7_5815001 chr2L_5815001 RAL-374 96 chr2L 5819654 5819703 chr2L 5819758 5819807 5 104 3.0 2.0 2.5 1.4 153 chr2L 5819654 intergenic not near genes chr2L 5819730 intergenic not near genes chr2L 5819807 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-374 97 chr2L 5827693 5827737 chr2L 5836720 5836764 roo 12 9023 4.0 1.5 2.8 3.2 9071 chr2L 5827693 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836764 intron TrissinR + chr2L_12_5830001 chr2L_5830001 RAL-374 98 chr2L 5931305 5931328 chr2L 5931437 5931460 6 132 2.0 1.0 1.5 2.4 155 chr2L 5931305 intron dsf + chr2L 5931382 intron dsf + chr2L 5931460 intron dsf + chr2L_6_5930001 chr2L_5930001 RAL-374 99 chr2L 6002424 6002456 chr2L 6002529 6002562 6 106 2.5 2.0 2.2 1.9 138 chr2L 6002424 3` UTR Tsp26A + chr2L 6002493 3` UTR Tsp26A + chr2L 6002562 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-374 100 chr2L 6050421 6050466 chr2L 6050545 6050590 7 124 3.0 0.0 1.5 2.8 169 chr2L 6050421 3` UTR CG12393 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050590 intergenic CG12393 +,CG9135 + chr2L_7_6050001 chr2L_6050001 RAL-374 101 chr2L 6151629 6151660 chr2L 6151720 6151737 8 94 0.5 3.5 2.0 2.7 108 chr2L 6151629 intergenic Muc26B + chr2L 6151683 intergenic Muc26B + chr2L 6151737 intergenic Muc26B + chr2L_8_6150001 chr2L_6150001 RAL-374 102 chr2L 6161312 6161347 chr2L 6161414 6161449 8 102 1.5 2.5 2.0 2.7 137 chr2L 6161312 intergenic CG13989 + chr2L 6161380 intergenic CG13989 + chr2L 6161449 intergenic CG13989 + chr2L_8_6160001 chr2L_6160001 RAL-374 103 chr2L 6185460 6185470 chr2L 6185520 6185565 4 78 1.5 4.5 3.0 1.0 105 chr2L 6185460 intron CG34380 + chr2L 6185512 intron CG34380 + chr2L 6185565 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-374 104 chr2L 6242960 6242981 chr2L 6243078 6243099 6 118 5.0 2.5 3.8 1.2 139 chr2L 6242960 intergenic not near genes chr2L 6243030 intergenic not near genes chr2L 6243099 intergenic not near genes chr2L_6_6240001 chr2L_6240001 RAL-374 105 chr2L 6251138 6251179 chr2L 6251527 6251568 9 389 6.5 2.5 4.5 1.6 430 chr2L 6251138 intergenic not near genes chr2L 6251353 intergenic not near genes chr2L 6251568 intergenic not near genes chr2L_9_6250001 chr2L_6250001 RAL-374 106 chr2L 6281882 6281913 chr2L 6282464 6282495 4 581 3.0 5.0 4.0 0.8 613 chr2L 6281882 intron Ddr + chr2L 6282188 intron Ddr + chr2L 6282495 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-374 107 chr2L 6283929 6283974 chr2L 6284060 6284105 9 130 2.0 3.0 2.5 2.6 176 chr2L 6283929 intron Ddr + chr2L 6284017 intron Ddr + chr2L 6284105 intron Ddr + chr2L_9_6280001 chr2L_6280001 RAL-374 108 chr2L 6299813 6299834 chr2L 6300003 6300018 7 188 3.5 8.5 6.0 1.0 205 chr2L 6299813 intron Ddr + chr2L 6299916 intron Ddr + chr2L 6300018 intron Ddr + chr2L_7_6295001 chr2L_6295001 RAL-374 109 chr2L 6363144 6363182 chr2L 6366071 6366124 Burdock 7 2936 3.5 2.5 3.0 1.8 2980 chr2L 6363144 intergenic not near genes chr2L 6364634 intergenic not near genes chr2L 6366124 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-374 110 chr2L 6414974 6415014 chr2L 6415085 6415123 4 110 0.0 0.5 0.2 3.3 149 chr2L 6414974 3` UTR CG13982 + chr2L 6415048 3` UTR CG13982 + chr2L 6415123 3` UTR CG13982 + chr2L_4_6415001 chr2L_6415001 RAL-374 111 chr2L 6426838 6426871 chr2L 6445118 6445151 roo 11 18280 3.0 4.5 3.8 2.3 18313 chr2L 6426838 3` UTR CG9527 - chr2L 6435994 intron CG9527 - chr2L 6445151 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-374 112 chr2L 6426877 6426887 chr2L 6445114 6445132 roo 5 18259 2.0 4.5 3.2 1.2 18255 chr2L 6426877 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445132 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-374 113 chr2L 6544351 6544395 chr2L 6544463 6544507 8 111 4.5 3.5 4.0 1.6 156 chr2L 6544351 intron eya - chr2L 6544429 intron eya - chr2L 6544507 intron eya - chr2L_8_6540001 chr2L_6540001 RAL-374 114 chr2L 6588888 6588932 chr2L 6588985 6589030 8 98 2.0 1.0 1.5 3.2 142 chr2L 6588888 intron CG11319 - chr2L 6588959 intron CG11319 - chr2L 6589030 intron CG11319 - chr2L_8_6585001 chr2L_6585001 RAL-374 115 chr2L 6640887 6640939 chr2L 6641002 6641053 9 109 1.5 2.5 2.0 3.0 166 chr2L 6640887 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641053 intron CG31635 - chr2L_9_6640001 chr2L_6640001 RAL-374 116 chr2L 6655506 6655524 chr2L 6655888 6655900 5 380 2.5 2.0 2.2 1.6 394 chr2L 6655506 exon CG31633 - chr2L 6655703 exon CG31633 - chr2L 6655900 exon CG31633 - chr2L_5_6655001 chr2L_6655001 RAL-374 117 chr2L 6740746 6740753 chr2L 6740851 6740856 4 106 0.0 6.5 3.2 1.0 110 chr2L 6740746 intergenic not near genes chr2L 6740801 intergenic not near genes chr2L 6740856 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-374 118 chr2L 6771981 6772005 chr2L 6772070 6772070 4 88 2.0 1.5 1.8 1.4 89 chr2L 6771981 intron CG11321 - chr2L 6772026 intron CG11321 - chr2L 6772070 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-374 119 chr2L 6799526 6799546 chr2L 6799632 6799654 8 107 3.5 1.5 2.5 2.3 128 chr2L 6799526 5` UTR CR43610 + chr2L 6799590 5` UTR CR43610 + chr2L 6799654 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-374 120 chr2L 6950146 6950186 chr2L 6950371 6950411 8 222 1.5 2.0 1.8 2.9 265 chr2L 6950146 5` UTR Gas41 - chr2L 6950278 intergenic Gas41 -,SA + chr2L 6950411 intergenic SA +,Gas41 - chr2L_8_6950001 chr2L_6950001 RAL-374 121 chr2L 6969266 6969307 chr2L 6969365 6969407 11 98 3.5 5.5 4.5 2.0 141 chr2L 6969266 3` UTR snRNP-U1-70K - chr2L 6969336 3` UTR snRNP-U1-70K - chr2L 6969407 3` UTR snRNP-U1-70K - chr2L_11_6965001 chr2L_6965001 RAL-374 122 chr2L 7005209 7005254 chr2L 7005325 7005370 10 116 2.0 2.0 2.0 3.3 161 chr2L 7005209 intron uif - chr2L 7005290 intron uif - chr2L 7005370 intron uif - chr2L_10_7005001 chr2L_7005001 RAL-374 123 chr2L 7042056 7042088 chr2L 7042165 7042195 4 107 2.0 1.5 1.8 1.4 139 chr2L 7042056 intron milt + chr2L 7042126 intron milt + chr2L 7042195 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-374 124 chr2L 7125769 7125810 chr2L 7125905 7125946 5 136 2.0 1.5 1.8 1.8 177 chr2L 7125769 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125946 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-374 125 chr2L 7126846 7126858 chr2L 7126945 7126957 4 99 2.0 0.0 1.0 2.0 111 chr2L 7126846 intron Pvf3 - chr2L 7126902 intron Pvf3 - chr2L 7126957 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-374 126 chr2L 7217226 7217270 chr2L 7217348 7217394 12 124 1.0 2.5 1.8 4.3 168 chr2L 7217226 intron CG13784 - chr2L 7217310 intron CG13784 - chr2L 7217394 intron CG13784 - chr2L_12_7215001 chr2L_7215001 RAL-374 127 chr2L 7335187 7335234 chr2L 7335304 7335349 6 116 1.0 1.0 1.0 3.0 162 chr2L 7335187 intron Wnt6 + chr2L 7335268 intron Wnt6 + chr2L 7335349 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-374 128 chr2L 7343306 7343345 chr2L 7350439 7350464 roo 4 7131 4.0 4.0 4.0 0.8 7158 chr2L 7343306 intron Wnt6 + chr2L 7346885 intron Wnt6 + chr2L 7350464 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-374 129 chr2L 7357506 7357546 chr2L 7357602 7357643 5 97 0.5 3.0 1.8 1.8 137 chr2L 7357506 intergenic not near genes chr2L 7357574 intergenic not near genes chr2L 7357643 intergenic not near genes chr2L_5_7355001 chr2L_7355001 RAL-374 130 chr2L 7508335 7508379 chr2L 7508435 7508451 12 98 2.0 1.5 1.8 4.3 116 chr2L 7508335 intron RapGAP1 - chr2L 7508393 intron RapGAP1 - chr2L 7508451 intron RapGAP1 - chr2L_12_7505001 chr2L_7505001 RAL-374 131 chr2L 7555198 7555230 chr2L 7555295 7555327 9 97 0.5 3.0 1.8 3.2 129 chr2L 7555198 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555327 intron RapGAP1 - chr2L_9_7555001 chr2L_7555001 RAL-374 132 chr2L 7562170 7562188 chr2L 7562270 7562288 5 100 2.0 4.0 3.0 1.2 118 chr2L 7562170 intron RapGAP1 - chr2L 7562229 intron RapGAP1 - chr2L 7562288 intron RapGAP1 - chr2L_5_7560001 chr2L_7560001 RAL-374 133 chr2L 7636354 7636369 chr2L 7636478 7636481 4 121 4.5 2.0 3.2 1.0 127 chr2L 7636354 5` UTR CR44799 + chr2L 7636418 intron CR44799 + chr2L 7636481 5` UTR CR44799 + chr2L_4_7635001 chr2L_7635001 RAL-374 134 chr2L 7640408 7640421 chr2L 7640514 7640527 5 106 1.5 1.5 1.5 2.0 119 chr2L 7640408 intergenic not near genes chr2L 7640468 intergenic not near genes chr2L 7640527 intergenic not near genes chr2L_5_7640001 chr2L_7640001 RAL-374 135 chr2L 7653033 7653040 chr2L 7653147 7653154 4 114 7.0 0.0 3.5 0.9 121 chr2L 7653033 intron Slob - chr2L 7653094 intron Slob - chr2L 7653154 intron Slob - chr2L_4_7650001 chr2L_7650001 RAL-374 136 chr2L 7655380 7655421 chr2L 7655488 7655529 6 107 2.0 2.5 2.2 1.9 149 chr2L 7655380 intron Slob - chr2L 7655454 intron Slob - chr2L 7655529 intron Slob - chr2L_6_7655001 chr2L_7655001 RAL-374 137 chr2L 7691788 7691831 chr2L 7691890 7691934 11 102 3.5 3.5 3.5 2.4 146 chr2L 7691788 exon CG7025 - chr2L 7691861 intron CG7025 - chr2L 7691934 exon CG7025 - chr2L_11_7690001 chr2L_7690001 RAL-374 138 chr2L 7778832 7778847 chr2L 7778953 7778954 4 118 5.5 0.0 2.8 1.1 122 chr2L 7778832 intergenic not near genes chr2L 7778893 intergenic not near genes chr2L 7778954 intergenic not near genes chr2L_4_7775001 chr2L_7775001 RAL-374 139 chr2L 7922721 7922774 chr2L 7922822 7922875 12 101 2.5 2.0 2.2 3.8 154 chr2L 7922721 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922875 intron Snoo - chr2L_12_7920001 chr2L_7920001 RAL-374 140 chr2L 7959026 7959056 chr2L 7960457 7960487 pogo 12 1427 4.5 5.0 4.8 2.1 1461 chr2L 7959026 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960487 intron Snoo - chr2L_12_7955001 chr2L_7955001 RAL-374 141 chr2L 8013601 8013608 chr2L 8018825 8018832 copia 5 5224 4.0 0.0 2.0 1.7 5231 chr2L 8013601 intron Tg + chr2L 8016216 intron Tg + chr2L 8018832 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-374 142 chr2L 8044076 8044127 chr2L 8044174 8044202 12 95 3.0 2.5 2.8 3.2 126 chr2L 8044076 intron CG7466 + chr2L 8044139 intron CG7466 + chr2L 8044202 intron CG7466 + chr2L_12_8040001 chr2L_8040001 RAL-374 143 chr2L 8165100 8165115 chr2L 8165203 8165215 4 102 0.0 5.5 2.8 1.1 115 chr2L 8165100 intron Piezo + chr2L 8165158 intron Piezo + chr2L 8165215 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-374 144 chr2L 8165117 8165135 chr2L 8165199 8165236 8 99 0.0 4.5 2.2 2.5 119 chr2L 8165117 intron Piezo + chr2L 8165176 intron Piezo + chr2L 8165236 intron Piezo + chr2L_8_8165001 chr2L_8165001 RAL-374 145 chr2L 8167124 8167174 chr2L 8167235 8167285 7 109 6.0 2.5 4.2 1.3 161 chr2L 8167124 intron Piezo + chr2L 8167204 intron Piezo + chr2L 8167285 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-374 146 chr2L 8184901 8184955 chr2L 8185011 8185060 13 110 2.5 6.0 4.2 2.5 159 chr2L 8184901 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185060 intron Piezo + chr2L_13_8180001 chr2L_8180001 RAL-374 147 chr2L 8230301 8230346 chr2L 8230404 8230445 7 102 1.0 0.0 0.5 4.7 144 chr2L 8230301 5` UTR Pvr - chr2L 8230373 intron Pvr - chr2L 8230445 intron Pvr - chr2L_7_8230001 chr2L_8230001 RAL-374 148 chr2L 8244712 8244746 chr2L 8244853 8244878 8 137 0.5 2.5 1.5 3.2 166 chr2L 8244712 intron CG8086 - chr2L 8244795 intron CG8086 - chr2L 8244878 intron CG8086 - chr2L_8_8240001 chr2L_8240001 RAL-374 149 chr2L 8286284 8286303 chr2L 8286390 8286405 5 105 7.0 3.5 5.2 0.8 121 chr2L 8286284 intron Btk29A - chr2L 8286344 intron Btk29A - chr2L 8286405 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-374 150 chr2L 8286306 8286326 chr2L 8286382 8286433 5 100 2.5 3.5 3.0 1.2 127 chr2L 8286306 intron Btk29A - chr2L 8286370 intron Btk29A - chr2L 8286433 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-374 151 chr2L 8351538 8351586 chr2L 8351635 8351683 6 97 0.0 2.5 1.2 2.7 145 chr2L 8351538 intergenic CG7778 + chr2L 8351610 intergenic CG7778 + chr2L 8351683 intergenic not near genes chr2L_6_8350001 chr2L_8350001 RAL-374 152 chr2L 8418127 8418178 chr2L 8418243 8418296 10 118 2.0 2.5 2.2 3.1 169 chr2L 8418127 intron Akap200 + chr2L 8418212 intron Akap200 + chr2L 8418296 intron Akap200 + chr2L_10_8415001 chr2L_8415001 RAL-374 153 chr2L 8452402 8452428 chr2L 8461593 8461619 roo 10 9191 7.0 2.5 4.8 1.7 9217 chr2L 8452402 intron fu12 - chr2L 8457010 intron fu12 - chr2L 8461619 intron fu12 - chr2L_10_8455001 chr2L_8455001 RAL-374 154 chr2L 8498195 8498239 chr2L 8498296 8498339 6 101 2.0 4.5 3.2 1.4 144 chr2L 8498195 intron Dh31 - chr2L 8498267 intron Dh31 - chr2L 8498339 intron Dh31 - chr2L_6_8495001 chr2L_8495001 RAL-374 155 chr2L 8538146 8538156 chr2L 8538242 8538252 4 96 4.0 0.0 2.0 1.3 106 chr2L 8538146 intron CG17834 + chr2L 8538199 intron CG17834 + chr2L 8538252 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-374 156 chr2L 8604988 8604998 chr2L 8605086 8605116 4 112 2.0 1.0 1.5 1.6 128 chr2L 8604988 intron Sema-1a + chr2L 8605052 intron Sema-1a + chr2L 8605116 intron Sema-1a + chr2L_4_8605001 chr2L_8605001 RAL-374 157 chr2L 8653082 8653131 chr2L 8653183 8653232 4 102 2.0 1.0 1.5 1.6 150 chr2L 8653082 intron Sema-1a + chr2L 8653157 intron Sema-1a + chr2L 8653232 intron Sema-1a + chr2L_4_8650001 chr2L_8650001 RAL-374 158 chr2L 8723117 8723126 chr2L 8731514 8731521 Tirant 5 8396 4.0 6.5 5.2 0.8 8404 chr2L 8723117 intron raw - chr2L 8727319 intron raw - chr2L 8731521 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-374 159 chr2L 8723128 8723137 chr2L 8731491 8731513 Tirant 4 8383 3.0 3.5 3.2 1.0 8385 chr2L 8723128 intron raw - chr2L 8727320 intron raw - chr2L 8731513 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-374 160 chr2L 8770592 8770619 chr2L 8770780 8770831 7 202 2.5 2.5 2.5 2.0 239 chr2L 8770592 exon CG9465 - chr2L 8770712 exon CG9465 - chr2L 8770831 exon CG9465 - chr2L_7_8770001 chr2L_8770001 RAL-374 161 chr2L 8784684 8784723 chr2L 8784815 8784854 11 131 4.0 2.0 3.0 2.8 170 chr2L 8784684 intergenic not near genes chr2L 8784769 intergenic not near genes chr2L 8784854 intergenic not near genes chr2L_11_8780001 chr2L_8780001 RAL-374 162 chr2L 8789315 8789339 chr2L 8789383 8789431 5 78 3.0 1.0 2.0 1.7 116 chr2L 8789315 intergenic not near genes chr2L 8789373 intergenic not near genes chr2L 8789431 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-374 163 chr2L 8799814 8799830 chr2L 8799925 8799964 7 131 2.0 5.0 3.5 1.6 150 chr2L 8799814 intergenic not near genes chr2L 8799889 intergenic not near genes chr2L 8799964 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-374 164 chr2L 9000260 9000311 chr2L 9007790 9007824 roo 9 7528 4.0 0.5 2.2 2.8 7564 chr2L 9000260 intergenic Try29F + chr2L 9004042 intergenic not near genes chr2L 9007824 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-374 165 chr2L 9040020 9040060 chr2L 9040127 9040167 9 107 3.0 2.5 2.8 2.4 147 chr2L 9040020 intergenic not near genes chr2L 9040094 intergenic not near genes chr2L 9040167 intergenic not near genes chr2L_9_9040001 chr2L_9040001 RAL-374 166 chr2L 9113787 9113808 chr2L 9113910 9113938 6 128 0.5 0.0 0.2 5.0 151 chr2L 9113787 intergenic not near genes chr2L 9113862 intergenic not near genes chr2L 9113938 intergenic not near genes chr2L_6_9110001 chr2L_9110001 RAL-374 167 chr2L 9156665 9156714 chr2L 9156763 9156812 8 94 3.0 1.0 2.0 2.7 147 chr2L 9156665 intron CG32982 + chr2L 9156738 intron CG32982 + chr2L 9156812 intron CG32982 + chr2L_8_9155001 chr2L_9155001 RAL-374 168 chr2L 9202054 9202088 chr2L 9202133 9202182 12 90 2.0 3.0 2.5 3.4 128 chr2L 9202054 intron tai + chr2L 9202118 intron tai + chr2L 9202182 intron tai + chr2L_12_9200001 chr2L_9200001 RAL-374 169 chr2L 9264328 9264373 chr2L 9264448 9264487 8 119 1.5 3.5 2.5 2.3 159 chr2L 9264328 intron Ggamma30A + chr2L 9264408 intron Ggamma30A + chr2L 9264487 intron Ggamma30A + chr2L_8_9260001 chr2L_9260001 RAL-374 170 chr2L 9270721 9270764 chr2L 9270835 9270876 10 107 1.0 4.5 2.8 2.6 155 chr2L 9270721 intron Ggamma30A + chr2L 9270798 intron Ggamma30A + chr2L 9270876 intron Ggamma30A + chr2L_10_9270001 chr2L_9270001 RAL-374 171 chr2L 9279970 9280007 chr2L 9280083 9280121 5 114 1.0 1.0 1.0 2.5 151 chr2L 9279970 intron Ggamma30A + chr2L 9280046 intron Ggamma30A + chr2L 9280121 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-374 172 chr2L 9287305 9287355 chr2L 9287422 9287470 12 116 1.0 5.5 3.2 2.9 165 chr2L 9287305 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287470 intron Ggamma30A + chr2L_12_9285001 chr2L_9285001 RAL-374 173 chr2L 9297357 9297404 chr2L 9297454 9297501 16 95 7.0 4.5 5.8 2.4 144 chr2L 9297357 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297501 3` UTR Ggamma30A + chr2L_16_9295001 chr2L_9295001 RAL-374 174 chr2L 9321708 9321749 chr2L 9321804 9321844 7 96 1.5 1.5 1.5 2.8 136 chr2L 9321708 intergenic not near genes chr2L 9321776 intergenic not near genes chr2L 9321844 intergenic not near genes chr2L_7_9320001 chr2L_9320001 RAL-374 175 chr2L 9375844 9375856 chr2L 9377241 9377283 5 1420 3.0 2.0 2.5 1.4 1439 chr2L 9375844 intron Shawl - chr2L 9376564 intron Shawl - chr2L 9377283 intron Shawl - chr2L_5_9375001 chr2L_9375001 RAL-374 176 chr2L 9385118 9385150 chr2L 9385228 9385259 10 109 3.0 5.5 4.2 1.9 141 chr2L 9385118 intron Shawl - chr2L 9385188 intron Shawl - chr2L 9385259 intron Shawl - chr2L_10_9385001 chr2L_9385001 RAL-374 177 chr2L 9387232 9387272 chr2L 9387350 9387389 4 118 1.5 0.5 1.0 2.0 157 chr2L 9387232 intron Shawl - chr2L 9387310 intron Shawl - chr2L 9387389 intron,5` UTR Shawl -,Aldh + chr2L_4_9385001 chr2L_9385001 RAL-374 178 chr2L 9391522 9391562 chr2L 9391702 9391745 14 186 0.5 3.0 1.8 5.0 223 chr2L 9391522 intron,3` UTR Shawl -,Aldh + chr2L 9391634 intron Shawl - chr2L 9391745 intron Shawl - chr2L_14_9390001 chr2L_9390001 RAL-374 179 chr2L 9393480 9393519 chr2L 9396467 9396502 jockey 10 2986 5.5 4.5 5.0 1.7 3022 chr2L 9393480 intron Shawl - chr2L 9394991 intron Shawl - chr2L 9396502 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-374 180 chr2L 9439612 9439645 chr2L 9439709 9439743 4 98 0.0 0.0 0.0 4.0 131 chr2L 9439612 intron numb + chr2L 9439678 intron numb + chr2L 9439743 intron numb + chr2L_4_9435001 chr2L_9435001 RAL-374 181 chr2L 9454957 9455006 chr2L 9455079 9455130 6 123 1.5 1.5 1.5 2.4 173 chr2L 9454957 intron numb + chr2L 9455044 intron numb + chr2L 9455130 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-374 182 chr2L 9457054 9457086 chr2L 9457150 9457181 17 94 8.5 3.5 6.0 2.4 127 chr2L 9457054 intron numb + chr2L 9457118 intron numb + chr2L 9457181 intron numb + chr2L_17_9455001 chr2L_9455001 RAL-374 183 chr2L 9457095 9457102 chr2L 9457149 9457198 5 87 4.5 3.5 4.0 1.0 103 chr2L 9457095 intron numb + chr2L 9457146 intron numb + chr2L 9457198 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-374 184 chr2L 9474775 9474809 chr2L 9474889 9474923 8 113 1.0 5.0 3.0 2.0 148 chr2L 9474775 intergenic not near genes chr2L 9474849 intergenic not near genes chr2L 9474923 intergenic not near genes chr2L_8_9470001 chr2L_9470001 RAL-374 185 chr2L 9490508 9490543 chr2L 9490604 9490635 8 96 1.0 2.0 1.5 3.2 127 chr2L 9490508 intergenic not near genes chr2L 9490572 intergenic not near genes chr2L 9490635 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-374 186 chr2L 9506347 9506367 chr2L 9506452 9506475 6 108 0.5 2.5 1.5 2.4 128 chr2L 9506347 intron CG33298 + chr2L 9506411 intron CG33298 + chr2L 9506475 intron CG33298 + chr2L_6_9505001 chr2L_9505001 RAL-374 187 chr2L 9733549 9733591 chr2L 9733661 9733703 12 111 1.5 3.0 2.2 3.8 154 chr2L 9733549 intron Nckx30C - chr2L 9733626 intron Nckx30C - chr2L 9733703 intron Nckx30C - chr2L_12_9730001 chr2L_9730001 RAL-374 188 chr2L 9837424 9837442 chr2L 9837519 9837540 6 98 1.5 1.5 1.5 2.4 116 chr2L 9837424 intron nAChRalpha6 - chr2L 9837482 intron nAChRalpha6 - chr2L 9837540 intron nAChRalpha6 - chr2L_6_9835001 chr2L_9835001 RAL-374 189 chr2L 9838113 9838150 chr2L 9838934 9838971 5 822 19.0 23.5 21.2 0.2 858 chr2L 9838113 intron nAChRalpha6 - chr2L 9838542 intron nAChRalpha6 - chr2L 9838971 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-374 190 chr2L 9892483 9892531 chr2L 9892579 9892627 6 96 3.5 3.5 3.5 1.3 144 chr2L 9892483 intron mtDNA-helicase - chr2L 9892555 intron mtDNA-helicase - chr2L 9892627 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-374 191 chr2L 9973717 9973749 chr2L 9980850 9980888 HMS-Beagle 9 7136 5.0 4.0 4.5 1.6 7171 chr2L 9973717 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980888 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-374 192 chr2L 9973751 9973758 chr2L 9980846 9980891 HMS-Beagle 4 7120 4.0 3.5 3.8 0.8 7140 chr2L 9973751 intergenic not near genes chr2L 9977321 intergenic not near genes chr2L 9980891 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-374 193 chr2L 9986344 9986372 chr2L 9986458 9986465 4 100 3.5 5.5 4.5 0.7 121 chr2L 9986344 intron bib + chr2L 9986404 intron bib + chr2L 9986465 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-374 194 chr2L 10051724 10051739 chr2L 10051811 10051835 5 95 4.0 2.0 3.0 1.2 111 chr2L 10051724 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051835 5` UTR CR44874 + chr2L_5_10050001 chr2L_10050001 RAL-374 195 chr2L 10105367 10105383 chr2L 10105468 10105485 4 102 4.0 3.0 3.5 0.9 118 chr2L 10105367 intron,intron CG44153 -,CG34109 + chr2L 10105426 intron,intron CG44153 -,CG34109 + chr2L 10105485 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-374 196 chr2L 10156302 10156337 chr2L 10163792 10163827 blood 8 7490 6.0 2.5 4.2 1.5 7525 chr2L 10156302 intron,3` UTR CG44153 -,CG4839 + chr2L 10160064 intron CG44153 - chr2L 10163827 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-374 197 chr2L 10176023 10176024 chr2L 16071771 16071771 6 5895748 11.5 10.5 11.0 0.5 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_6_13120001 chr2L_13120001 RAL-374 198 chr2L 10177883 10177915 chr2L 10177983 10178015 7 100 2.0 2.0 2.0 2.3 132 chr2L 10177883 intron CG44153 - chr2L 10177949 intron CG44153 - chr2L 10178015 intron CG44153 - chr2L_7_10175001 chr2L_10175001 RAL-374 199 chr2L 10258411 10258426 chr2L 10258516 10258529 5 105 2.0 1.0 1.5 2.0 118 chr2L 10258411 intron Pten - chr2L 10258470 intron Pten - chr2L 10258529 intron Pten - chr2L_5_10255001 chr2L_10255001 RAL-374 200 chr2L 10515344 10515391 chr2L 10515457 10515504 6 113 1.5 2.0 1.8 2.1 160 chr2L 10515344 intron,intron CG45083 -,Fatp - chr2L 10515424 intron,intron CG45083 -,Fatp - chr2L 10515504 intron,intron CG45083 -,Fatp - chr2L_6_10515001 chr2L_10515001 RAL-374 201 chr2L 10554308 10554327 chr2L 10554411 10554430 4 103 2.5 2.0 2.2 1.2 122 chr2L 10554308 intron Trim9 + chr2L 10554369 intron Trim9 + chr2L 10554430 intron Trim9 + chr2L_4_10550001 chr2L_10550001 RAL-374 202 chr2L 10563913 10563947 chr2L 10564004 10564060 9 103 1.0 2.5 1.8 3.2 147 chr2L 10563913 intron Trim9 + chr2L 10563986 intron Trim9 + chr2L 10564060 intron Trim9 + chr2L_9_10560001 chr2L_10560001 RAL-374 203 chr2L 10592832 10592869 chr2L 10600514 10600551 opus 11 7681 1.0 4.5 2.8 2.9 7719 chr2L 10592832 intron Trim9 + chr2L 10596692 intron Trim9 + chr2L 10600551 intron Trim9 + chr2L_11_10595001 chr2L_10595001 RAL-374 204 chr2L 10627413 10627447 chr2L 10627511 10627547 7 99 1.0 2.0 1.5 2.8 134 chr2L 10627413 3` UTR Trim9 + chr2L 10627480 3` UTR Trim9 + chr2L 10627547 3` UTR Trim9 + chr2L_7_10625001 chr2L_10625001 RAL-374 205 chr2L 10631240 10631249 chr2L 10631348 10631360 7 111 7.0 0.0 3.5 1.6 120 chr2L 10631240 intron CG7329 - chr2L 10631300 intron CG7329 - chr2L 10631360 intron CG7329 - chr2L_7_10630001 chr2L_10630001 RAL-374 206 chr2L 10687575 10687601 chr2L 10687678 10687704 6 103 1.0 3.5 2.2 1.9 129 chr2L 10687575 intergenic not near genes chr2L 10687640 intergenic not near genes chr2L 10687704 intergenic not near genes chr2L_6_10685001 chr2L_10685001 RAL-374 207 chr2L 10752117 10752165 chr2L 10752216 10752264 14 98 4.0 4.0 4.0 2.8 147 chr2L 10752117 intron CG17124 - chr2L 10752190 intron CG17124 - chr2L 10752264 intron CG17124 - chr2L_14_10750001 chr2L_10750001 RAL-374 208 chr2L 10786795 10786842 chr2L 10786969 10786995 5 169 2.0 0.0 1.0 2.5 200 chr2L 10786795 intron CG31869 - chr2L 10786895 intron CG31869 - chr2L 10786995 intron CG31869 - chr2L_5_10785001 chr2L_10785001 RAL-374 209 chr2L 10793298 10793346 chr2L 10793395 10793446 9 99 2.5 2.0 2.2 2.8 148 chr2L 10793298 intron CG31869 - chr2L 10793372 intron CG31869 - chr2L 10793446 intron CG31869 - chr2L_9_10790001 chr2L_10790001 RAL-374 210 chr2L 10826705 10826726 chr2L 10826809 10826813 7 100 5.5 2.0 3.8 1.5 108 chr2L 10826705 intron Nos - chr2L 10826759 intron Nos - chr2L 10826813 intron Nos - chr2L_7_10825001 chr2L_10825001 RAL-374 211 chr2L 10836330 10836358 chr2L 10836420 10836457 8 98 1.0 1.5 1.2 3.6 127 chr2L 10836330 intron Nos - chr2L 10836394 intron Nos - chr2L 10836457 intron Nos - chr2L_8_10835001 chr2L_10835001 RAL-374 212 chr2L 10862844 10862872 chr2L 10864465 10864506 Rt1c 7 1631 0.5 2.5 1.5 2.8 1662 chr2L 10862844 3` UTR CR43807 - chr2L 10863675 intron CR43807 - chr2L 10864506 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-374 213 chr2L 10891471 10891517 chr2L 10891605 10891607 4 122 1.0 3.5 2.2 1.2 136 chr2L 10891471 intergenic not near genes chr2L 10891539 intergenic not near genes chr2L 10891607 intergenic not near genes chr2L_4_10890001 chr2L_10890001 RAL-374 214 chr2L 10946938 10946966 chr2L 10956171 10956186 roo 4 9228 1.5 3.0 2.2 1.2 9248 chr2L 10946938 intron dpr2 - chr2L 10951562 intron dpr2 - chr2L 10956186 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-374 215 chr2L 11142492 11142534 chr2L 11142594 11142636 9 102 2.5 0.5 1.5 3.6 144 chr2L 11142492 intron Gyc32E - chr2L 11142564 intron Gyc32E - chr2L 11142636 intron Gyc32E - chr2L_9_11140001 chr2L_11140001 RAL-374 216 chr2L 11145683 11145735 chr2L 11145841 11145889 7 157 3.0 2.5 2.8 1.8 206 chr2L 11145683 intron Gyc32E - chr2L 11145786 intron Gyc32E - chr2L 11145889 intron Gyc32E - chr2L_7_11145001 chr2L_11145001 RAL-374 217 chr2L 11169575 11169591 chr2L 11169677 11169693 4 102 0.0 4.5 2.2 1.2 118 chr2L 11169575 intron Ca-beta - chr2L 11169634 intron Ca-beta - chr2L 11169693 intron Ca-beta - chr2L_4_11165001 chr2L_11165001 RAL-374 218 chr2L 11183771 11183812 chr2L 11183887 11183928 8 116 1.5 1.0 1.2 3.6 157 chr2L 11183771 intron Ca-beta - chr2L 11183850 intron Ca-beta - chr2L 11183928 intron Ca-beta - chr2L_8_11180001 chr2L_11180001 RAL-374 219 chr2L 11193561 11193596 chr2L 11193664 11193710 7 111 0.0 3.0 1.5 2.8 149 chr2L 11193561 intron Ca-beta - chr2L 11193636 intron Ca-beta - chr2L 11193710 intron Ca-beta - chr2L_7_11190001 chr2L_11190001 RAL-374 220 chr2L 11281909 11281932 chr2L 11282005 11282029 6 97 2.5 1.0 1.8 2.1 120 chr2L 11281909 3` UTR Ppt2 + chr2L 11281969 intergenic Ppt2 +,mre11 + chr2L 11282029 intergenic mre11 +,Ppt2 + chr2L_6_11280001 chr2L_11280001 RAL-374 221 chr2L 11292361 11292406 chr2L 11292463 11292496 17 100 1.5 3.5 2.5 4.9 135 chr2L 11292361 intergenic not near genes chr2L 11292428 intergenic not near genes chr2L 11292496 intergenic not near genes chr2L_17_11290001 chr2L_11290001 RAL-374 222 chr2L 11339720 11339941 chr2L 11339814 11340037 17 93 1.5 1.0 1.2 7.7 317 chr2L 11339720 intergenic not near genes chr2L 11339878 intergenic not near genes chr2L 11340037 intergenic not near genes chr2L_17_11335001 chr2L_11335001 RAL-374 223 chr2L 11356390 11356420 chr2L 11356520 11356550 7 130 3.0 2.0 2.5 2.0 160 chr2L 11356390 intergenic not near genes chr2L 11356470 intergenic not near genes chr2L 11356550 intergenic not near genes chr2L_7_11355001 chr2L_11355001 RAL-374 224 chr2L 11380601 11380643 chr2L 11380698 11380739 5 97 0.5 1.5 1.0 2.5 138 chr2L 11380601 intergenic not near genes chr2L 11380670 intergenic not near genes chr2L 11380739 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-374 225 chr2L 11395035 11395050 chr2L 11395137 11395150 6 100 2.0 4.0 3.0 1.5 115 chr2L 11395035 intergenic not near genes chr2L 11395092 intergenic not near genes chr2L 11395150 intergenic not near genes chr2L_6_11395001 chr2L_11395001 RAL-374 226 chr2L 11418635 11418687 chr2L 11418734 11418779 11 98 2.0 3.5 2.8 2.9 144 chr2L 11418635 intergenic not near genes chr2L 11418707 intergenic not near genes chr2L 11418779 intergenic not near genes chr2L_11_11415001 chr2L_11415001 RAL-374 227 chr2L 11433598 11433638 chr2L 11433697 11433736 11 98 3.5 3.5 3.5 2.4 138 chr2L 11433598 intergenic not near genes chr2L 11433667 intergenic not near genes chr2L 11433736 intergenic not near genes chr2L_11_11430001 chr2L_11430001 RAL-374 228 chr2L 11450107 11450157 chr2L 11450213 11450259 7 104 0.0 2.0 1.0 3.5 152 chr2L 11450107 intergenic not near genes chr2L 11450183 intergenic not near genes chr2L 11450259 intergenic not near genes chr2L_7_11450001 chr2L_11450001 RAL-374 229 chr2L 11451251 11451299 chr2L 11451364 11451413 16 113 4.0 3.0 3.5 3.6 162 chr2L 11451251 intergenic not near genes chr2L 11451332 intergenic not near genes chr2L 11451413 intergenic not near genes chr2L_16_11450001 chr2L_11450001 RAL-374 230 chr2L 11540570 11540612 chr2L 11547994 11548034 Tabor 4 7423 3.0 3.5 3.2 1.0 7464 chr2L 11540570 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548034 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-374 231 chr2L 11563620 11563664 chr2L 11568843 11568888 copia 12 5223 3.5 3.0 3.2 2.9 5268 chr2L 11563620 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568888 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-374 232 chr2L 11614073 11614085 chr2L 11615551 11615581 hopper2 4 1490 2.5 2.5 2.5 1.1 1508 chr2L 11614073 intron kek2 + chr2L 11614827 intron kek2 + chr2L 11615581 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-374 233 chr2L 11615890 11615916 chr2L 11615999 11616025 4 109 2.5 2.0 2.2 1.2 135 chr2L 11615890 intron kek2 + chr2L 11615958 intron kek2 + chr2L 11616025 intron kek2 + chr2L_4_11615001 chr2L_11615001 RAL-374 234 chr2L 11677159 11677183 chr2L 11677309 11677314 7 147 1.5 2.5 2.0 2.3 155 chr2L 11677159 intergenic not near genes chr2L 11677236 intergenic not near genes chr2L 11677314 intergenic not near genes chr2L_7_11675001 chr2L_11675001 RAL-374 235 chr2L 11713501 11713531 chr2L 11720984 11721013 blood 7 7485 4.0 3.5 3.8 1.5 7512 chr2L 11713501 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721013 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-374 236 chr2L 11750319 11750342 chr2L 11750613 11750648 7 303 0.5 1.0 0.8 3.9 329 chr2L 11750319 intergenic not near genes chr2L 11750484 intergenic not near genes chr2L 11750648 intergenic not near genes chr2L_7_11750001 chr2L_11750001 RAL-374 237 chr2L 11862338 11862372 chr2L 11862451 11862485 12 113 1.5 3.5 2.5 3.4 147 chr2L 11862338 intron Pde1c - chr2L 11862412 intron Pde1c - chr2L 11862485 intron Pde1c - chr2L_12_11860001 chr2L_11860001 RAL-374 238 chr2L 11865497 11865539 chr2L 11865629 11865671 10 130 4.5 3.5 4.0 2.0 174 chr2L 11865497 intron Pde1c - chr2L 11865584 intron Pde1c - chr2L 11865671 intron Pde1c - chr2L_10_11865001 chr2L_11865001 RAL-374 239 chr2L 11910936 11910985 chr2L 11911034 11911060 15 94 2.0 0.5 1.2 6.8 124 chr2L 11910936 intron Pde1c - chr2L 11910998 intron Pde1c - chr2L 11911060 intron Pde1c - chr2L_15_11910001 chr2L_11910001 RAL-374 240 chr2L 12067309 12067349 chr2L 12074381 12074419 297 14 7072 2.0 1.0 1.5 5.6 7110 chr2L 12067309 intergenic not near genes chr2L 12070864 intergenic not near genes chr2L 12074419 intergenic not near genes chr2L_14_12070001 chr2L_12070001 RAL-374 241 chr2L 12132708 12132743 chr2L 12132814 12132849 4 106 0.0 1.5 0.8 2.2 141 chr2L 12132708 intron rho-6 - chr2L 12132778 intron rho-6 - chr2L 12132849 intron rho-6 - chr2L_4_12130001 chr2L_12130001 RAL-374 242 chr2L 12262835 12262866 chr2L 12262939 12262970 4 104 0.0 2.5 1.2 1.8 135 chr2L 12262835 intron aret + chr2L 12262902 intron aret + chr2L 12262970 intron aret + chr2L_4_12260001 chr2L_12260001 RAL-374 243 chr2L 12305399 12305430 chr2L 12305501 12305535 13 107 1.0 2.5 1.8 4.6 136 chr2L 12305399 intron aret + chr2L 12305467 intron aret + chr2L 12305535 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-374 244 chr2L 12366844 12366889 chr2L 12366950 12366993 10 106 1.0 1.5 1.2 4.5 149 chr2L 12366844 intron bru-2 + chr2L 12366918 intron bru-2 + chr2L 12366993 intron bru-2 + chr2L_10_12365001 chr2L_12365001 RAL-374 245 chr2L 12410988 12411026 chr2L 12411087 12411125 8 98 2.5 0.0 1.2 3.6 137 chr2L 12410988 intron vir-1 - chr2L 12411056 intron vir-1 - chr2L 12411125 intron vir-1 - chr2L_8_12410001 chr2L_12410001 RAL-374 246 chr2L 12411993 12412039 chr2L 12412126 12412172 15 133 1.5 2.5 2.0 5.0 179 chr2L 12411993 intron vir-1 - chr2L 12412082 intron vir-1 - chr2L 12412172 intron vir-1 - chr2L_15_12410001 chr2L_12410001 RAL-374 247 chr2L 12424347 12424368 chr2L 12424443 12424464 6 96 0.0 2.0 1.0 3.0 117 chr2L 12424347 intergenic not near genes chr2L 12424406 intergenic CG6405 + chr2L 12424464 intergenic CG6405 + chr2L_6_12420001 chr2L_12420001 RAL-374 248 chr2L 12490080 12490111 chr2L 12490239 12490270 6 159 2.0 2.5 2.2 1.9 190 chr2L 12490080 intron bun - chr2L 12490175 intron bun - chr2L 12490270 intron bun - chr2L_6_12490001 chr2L_12490001 RAL-374 249 chr2L 12529129 12529179 chr2L 12529686 12529736 4 557 0.5 3.5 2.0 1.3 607 chr2L 12529129 intron bun - chr2L 12529432 intron bun - chr2L 12529736 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-374 250 chr2L 12558311 12558346 chr2L 12565460 12565495 HMS-Beagle 5 7145 2.5 2.5 2.5 1.4 7184 chr2L 12558311 intergenic not near genes chr2L 12561903 intergenic not near genes chr2L 12565495 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-374 251 chr2L 12621100 12621140 chr2L 12621196 12621216 7 92 2.5 0.5 1.5 2.8 116 chr2L 12621100 intron,intron nub +,Ref2 - chr2L 12621158 intron,intron nub +,Ref2 - chr2L 12621216 intron,intron nub +,Ref2 - chr2L_7_12620001 chr2L_12620001 RAL-374 252 chr2L 12731039 12731081 chr2L 12735826 12735868 F-element 6 4787 2.5 3.5 3.0 1.5 4829 chr2L 12731039 intron MRP + chr2L 12733454 intron MRP + chr2L 12735868 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-374 253 chr2L 12739158 12739197 chr2L 12743959 12743998 Doc 8 4801 2.5 3.5 3.0 2.0 4840 chr2L 12739158 exon MRP + chr2L 12741578 intron MRP + chr2L 12743998 exon MRP + chr2L_8_12740001 chr2L_12740001 RAL-374 254 chr2L 12766755 12766777 chr2L 12766853 12766875 4 98 2.0 2.5 2.2 1.2 120 chr2L 12766755 intergenic not near genes chr2L 12766815 intergenic not near genes chr2L 12766875 intergenic not near genes chr2L_4_12765001 chr2L_12765001 RAL-374 255 chr2L 12781793 12781812 chr2L 12789260 12789268 Quasimodo 5 7464 5.0 7.0 6.0 0.7 7475 chr2L 12781793 intergenic not near genes chr2L 12785530 intergenic not near genes chr2L 12789268 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-374 256 chr2L 12791588 12791627 chr2L 12795283 12795304 F-element 9 3688 1.5 4.0 2.8 2.4 3716 chr2L 12791588 intergenic not near genes chr2L 12793446 intergenic not near genes chr2L 12795304 intergenic not near genes chr2L_9_12790001 chr2L_12790001 RAL-374 257 chr2L 12848405 12848462 chr2L 12848517 12848570 14 110 1.0 1.0 1.0 7.0 165 chr2L 12848405 intergenic not near genes chr2L 12848488 intergenic not near genes chr2L 12848570 intergenic not near genes chr2L_14_12845001 chr2L_12845001 RAL-374 258 chr2L 12855289 12855314 chr2L 12855393 12855417 5 104 0.0 0.0 0.0 5.0 128 chr2L 12855289 intergenic not near genes chr2L 12855353 intergenic not near genes chr2L 12855417 intergenic not near genes chr2L_5_12855001 chr2L_12855001 RAL-374 259 chr2L 12861676 12861730 chr2L 12863163 12863172 hobo 4 1468 3.5 1.0 2.2 1.2 1496 chr2L 12861676 intergenic not near genes chr2L 12862424 intergenic not near genes chr2L 12863172 intergenic not near genes chr2L_4_12860001 chr2L_12860001 RAL-374 260 chr2L 12933834 12933883 chr2L 12941321 12941354 blood 7 7485 6.0 3.5 4.8 1.2 7520 chr2L 12933834 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941354 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-374 261 chr2L 12971078 12971116 chr2L 12971252 12971291 5 172 2.0 1.5 1.8 1.8 213 chr2L 12971078 intergenic not near genes chr2L 12971184 intergenic not near genes chr2L 12971291 intergenic not near genes chr2L_5_12970001 chr2L_12970001 RAL-374 262 chr2L 13154101 13154116 chr2L 13154199 13154214 4 98 2.0 0.0 1.0 2.0 113 chr2L 13154101 intergenic not near genes chr2L 13154158 intergenic not near genes chr2L 13154214 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-374 263 chr2L 13199962 13199999 chr2L 13200049 13200055 4 80 1.0 1.0 1.0 2.0 93 chr2L 13199962 exon CG16972 - chr2L 13200008 exon CG16972 - chr2L 13200055 exon CG16972 - chr2L_4_13200001 chr2L_13200001 RAL-374 264 chr2L 13405634 13405683 chr2L 13410451 13410494 Doc 4 4816 2.5 5.5 4.0 0.8 4860 chr2L 13405634 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410494 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-374 265 chr2L 13449445 13449489 chr2L 13456901 13456945 Quasimodo 11 7455 1.0 4.5 2.8 2.9 7500 chr2L 13449445 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453195 intron CG42784 + chr2L 13456945 intron CG42784 + chr2L_11_13450001 chr2L_13450001 RAL-374 266 chr2L 13481441 13481465 chr2L 13482068 13482075 jockey 4 622 2.5 5.0 3.8 0.8 634 chr2L 13481441 intron CG42784 + chr2L 13481758 intron CG42784 + chr2L 13482075 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-374 267 chr2L 13522113 13522161 chr2L 13527651 13527699 Transpac 9 5537 0.5 6.0 3.2 2.1 5586 chr2L 13522113 intron B4 - chr2L 13524906 intron B4 - chr2L 13527699 intron B4 - chr2L_9_13520001 chr2L_13520001 RAL-374 268 chr2L 13530723 13530757 chr2L 13531141 13531175 7 418 3.5 5.0 4.2 1.3 452 chr2L 13530723 intron,3` UTR B4 -,CG33642 + chr2L 13530949 intron B4 - chr2L 13531175 intron,exon B4 -,CG33643 + chr2L_7_13530001 chr2L_13530001 RAL-374 269 chr2L 13622116 13622157 chr2L 13622234 13622273 8 117 6.0 1.0 3.5 1.8 157 chr2L 13622116 intron kuz + chr2L 13622194 intron kuz + chr2L 13622273 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-374 270 chr2L 13633687 13633728 chr2L 13633812 13633851 10 121 4.0 3.5 3.8 2.1 164 chr2L 13633687 intron kuz + chr2L 13633769 intron kuz + chr2L 13633851 intron kuz + chr2L_10_13630001 chr2L_13630001 RAL-374 271 chr2L 13842117 13842164 chr2L 13842221 13842267 6 102 1.5 0.5 1.0 3.0 150 chr2L 13842117 intron CenG1A + chr2L 13842192 intron CenG1A + chr2L 13842267 intron CenG1A + chr2L_6_13840001 chr2L_13840001 RAL-374 272 chr2L 13853079 13853108 chr2L 13862248 13862277 roo 6 9170 2.5 3.5 3.0 1.5 9198 chr2L 13853079 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862277 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-374 273 chr2L 13913572 13913599 chr2L 13913705 13913732 6 133 2.5 3.5 3.0 1.5 160 chr2L 13913572 intergenic not near genes chr2L 13913652 intergenic not near genes chr2L 13913732 intergenic not near genes chr2L_6_13910001 chr2L_13910001 RAL-374 274 chr2L 13988283 13988302 chr2L 13988390 13988405 8 106 1.0 3.5 2.2 2.5 122 chr2L 13988283 intron rk - chr2L 13988344 intron rk - chr2L 13988405 intron rk - chr2L_8_13985001 chr2L_13985001 RAL-374 275 chr2L 14148657 14148697 chr2L 14148795 14148835 9 137 1.0 2.5 1.8 3.2 178 chr2L 14148657 intron CG17341 + chr2L 14148746 intron CG17341 + chr2L 14148835 intron CG17341 + chr2L_9_14145001 chr2L_14145001 RAL-374 276 chr2L 14160665 14160717 chr2L 14160771 14160823 8 106 1.0 2.5 1.8 2.9 158 chr2L 14160665 intergenic CG17341 +,CG43332 - chr2L 14160744 intergenic CG17341 +,CG43332 - chr2L 14160823 intergenic CG17341 +,CG43332 - chr2L_8_14160001 chr2L_14160001 RAL-374 277 chr2L 14257239 14257276 chr2L 14257360 14257398 10 120 3.5 1.5 2.5 2.9 159 chr2L 14257239 intergenic not near genes chr2L 14257318 intergenic not near genes chr2L 14257398 intergenic not near genes chr2L_10_14255001 chr2L_14255001 RAL-374 278 chr2L 14274895 14274916 chr2L 14274975 14275014 4 91 1.0 4.5 2.8 1.1 119 chr2L 14274895 intron,5` UTR wb +,CG32971 + chr2L 14274954 intron,intron wb +,CG32971 + chr2L 14275014 intron,intron wb +,CG32971 + chr2L_4_14270001 chr2L_14270001 RAL-374 279 chr2L 14374758 14374788 chr2L 14374869 14374899 5 111 3.5 3.0 3.2 1.2 141 chr2L 14374758 intergenic not near genes chr2L 14374828 intergenic not near genes chr2L 14374899 intergenic not near genes chr2L_5_14370001 chr2L_14370001 RAL-374 280 chr2L 14378631 14378666 chr2L 14378730 14378765 9 99 6.0 0.0 3.0 2.2 134 chr2L 14378631 3` UTR ppk - chr2L 14378698 3` UTR ppk - chr2L 14378765 3` UTR ppk - chr2L_9_14375001 chr2L_14375001 RAL-374 281 chr2L 14482093 14482140 chr2L 14482219 14482265 9 122 2.0 4.0 3.0 2.2 172 chr2L 14482093 intergenic not near genes chr2L 14482179 intergenic not near genes chr2L 14482265 intergenic not near genes chr2L_9_14480001 chr2L_14480001 RAL-374 282 chr2L 14549132 14549171 chr2L 14549228 14549267 4 96 2.5 3.0 2.8 1.1 135 chr2L 14549132 intergenic CG4218 - chr2L 14549200 intergenic CG4218 - chr2L 14549267 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-374 283 chr2L 14555133 14555156 chr2L 14555232 14555255 4 99 3.0 0.0 1.5 1.6 122 chr2L 14555133 intergenic not near genes chr2L 14555194 intergenic not near genes chr2L 14555255 intergenic not near genes chr2L_4_14555001 chr2L_14555001 RAL-374 284 chr2L 14588376 14588410 chr2L 14588550 14588584 11 173 6.5 3.0 4.8 1.9 208 chr2L 14588376 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588584 intergenic CG42680 - chr2L_11_14585001 chr2L_14585001 RAL-374 285 chr2L 14601958 14601994 chr2L 14602062 14602081 6 101 2.5 3.0 2.8 1.6 123 chr2L 14601958 exon osp - chr2L 14602020 intron osp - chr2L 14602081 intron osp - chr2L_6_14600001 chr2L_14600001 RAL-374 286 chr2L 14642560 14642580 chr2L 14651742 14651762 roo 6 9182 3.0 6.5 4.8 1.0 9202 chr2L 14642560 intron osp - chr2L 14647161 intron osp - chr2L 14651762 intron osp - chr2L_6_14645001 chr2L_14645001 RAL-374 287 chr2L 14667909 14667952 chr2L 14668140 14668183 7 231 1.0 1.0 1.0 3.5 274 chr2L 14667909 intron osp - chr2L 14668046 intron osp - chr2L 14668183 intron osp - chr2L_7_14665001 chr2L_14665001 RAL-374 288 chr2L 14715527 14715566 chr2L 14715638 14715677 13 110 2.5 4.5 3.5 2.9 150 chr2L 14715527 intergenic not near genes chr2L 14715602 intergenic not near genes chr2L 14715677 intergenic not near genes chr2L_13_14715001 chr2L_14715001 RAL-374 289 chr2L 14747523 14747548 chr2L 14747630 14747655 5 106 1.5 4.0 2.8 1.3 132 chr2L 14747523 intergenic not near genes chr2L 14747589 intergenic not near genes chr2L 14747655 intergenic not near genes chr2L_5_14745001 chr2L_14745001 RAL-374 290 chr2L 14803859 14803906 chr2L 14809082 14809105 copia 7 5216 3.5 2.0 2.8 1.8 5246 chr2L 14803859 intergenic not near genes chr2L 14806482 intergenic not near genes chr2L 14809105 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-374 291 chr2L 14831616 14831636 chr2L 14831773 14831790 5 155 3.0 5.5 4.2 1.0 174 chr2L 14831616 intergenic not near genes chr2L 14831703 intergenic not near genes chr2L 14831790 intergenic not near genes chr2L_5_14830001 chr2L_14830001 RAL-374 292 chr2L 14840963 14841009 chr2L 14841069 14841115 10 106 0.5 1.0 0.8 5.6 152 chr2L 14840963 3` UTR CR43805 - chr2L 14841039 3` UTR CR43805 - chr2L 14841115 3` UTR CR43805 - chr2L_10_14840001 chr2L_14840001 RAL-374 293 chr2L 14842396 14842436 chr2L 14842499 14842540 13 103 3.0 6.0 4.5 2.4 144 chr2L 14842396 exon CG42682 + chr2L 14842468 intron CG42682 + chr2L 14842540 exon CG42682 + chr2L_13_14840001 chr2L_14840001 RAL-374 294 chr2L 14850676 14850709 chr2L 14850775 14850805 6 98 2.0 4.5 3.2 1.4 129 chr2L 14850676 intron CG15279 - chr2L 14850740 intron CG15279 - chr2L 14850805 intron CG15279 - chr2L_6_14850001 chr2L_14850001 RAL-374 295 chr2L 14920018 14920061 chr2L 14920113 14920160 10 95 1.5 1.0 1.2 4.5 142 chr2L 14920018 intron CG42313 - chr2L 14920089 intron CG42313 - chr2L 14920160 intron CG42313 - chr2L_10_14920001 chr2L_14920001 RAL-374 296 chr2L 14941588 14941633 chr2L 14941747 14941792 10 158 2.0 5.0 3.5 2.2 204 chr2L 14941588 exon CG42313 - chr2L 14941690 intron CG42313 - chr2L 14941792 intron CG42313 - chr2L_10_14940001 chr2L_14940001 RAL-374 297 chr2L 14984365 14984391 chr2L 14991987 14992013 opus 5 7622 5.0 4.0 4.5 0.9 7648 chr2L 14984365 intron mol - chr2L 14988189 intron mol - chr2L 14992013 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-374 298 chr2L 15026011 15026045 chr2L 15026112 15026145 9 100 5.5 5.0 5.2 1.5 134 chr2L 15026011 exon GABA-B-R1 + chr2L 15026078 intron GABA-B-R1 + chr2L 15026145 intron GABA-B-R1 + chr2L_9_15025001 chr2L_15025001 RAL-374 299 chr2L 15044701 15044725 chr2L 15044797 15044821 8 96 2.0 0.0 1.0 4.0 120 chr2L 15044701 intergenic ck - chr2L 15044761 intergenic ck - chr2L 15044821 intergenic ck - chr2L_8_15040001 chr2L_15040001 RAL-374 300 chr2L 15056707 15056735 chr2L 15056797 15056844 7 106 2.0 3.0 2.5 2.0 137 chr2L 15056707 intron ck - chr2L 15056776 intron ck - chr2L 15056844 intron ck - chr2L_7_15055001 chr2L_15055001 RAL-374 301 chr2L 15078054 15078092 chr2L 15078162 15078199 8 108 2.0 2.0 2.0 2.7 145 chr2L 15078054 intron CG15270 + chr2L 15078126 intron CG15270 + chr2L 15078199 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-374 302 chr2L 15175236 15175279 chr2L 15175365 15175408 9 129 2.0 1.0 1.5 3.6 172 chr2L 15175236 intron CG4168 - chr2L 15175322 intron CG4168 - chr2L 15175408 intron CG4168 - chr2L_9_15175001 chr2L_15175001 RAL-374 303 chr2L 15227705 15227728 chr2L 15227785 15227839 8 91 2.0 2.5 2.2 2.5 134 chr2L 15227705 intergenic not near genes chr2L 15227772 intergenic not near genes chr2L 15227839 intergenic not near genes chr2L_8_15225001 chr2L_15225001 RAL-374 304 chr2L 15355705 15355742 chr2L 15355803 15355840 7 98 4.0 2.0 3.0 1.8 135 chr2L 15355705 intergenic not near genes chr2L 15355772 intergenic not near genes chr2L 15355840 intergenic not near genes chr2L_7_15355001 chr2L_15355001 RAL-374 305 chr2L 15391368 15391408 chr2L 15391467 15391512 10 102 1.0 3.5 2.2 3.1 144 chr2L 15391368 intergenic not near genes chr2L 15391440 intergenic not near genes chr2L 15391512 intergenic not near genes chr2L_10_15390001 chr2L_15390001 RAL-374 306 chr2L 15446031 15446073 chr2L 15453519 15453562 blood 4 7488 1.5 2.0 1.8 1.4 7531 chr2L 15446031 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453562 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-374 307 chr2L 15458257 15458279 chr2L 15458365 15458387 7 107 2.5 3.5 3.0 1.8 130 chr2L 15458257 intergenic not near genes chr2L 15458322 intergenic not near genes chr2L 15458387 intergenic not near genes chr2L_7_15455001 chr2L_15455001 RAL-374 308 chr2L 15483262 15483311 chr2L 15483368 15483417 9 105 2.5 1.0 1.8 3.2 155 chr2L 15483262 intergenic not near genes chr2L 15483340 intergenic not near genes chr2L 15483417 intergenic not near genes chr2L_9_15480001 chr2L_15480001 RAL-374 309 chr2L 15497368 15497415 chr2L 15497497 15497544 6 124 2.5 5.5 4.0 1.2 176 chr2L 15497368 intergenic not near genes chr2L 15497456 intergenic not near genes chr2L 15497544 intergenic not near genes chr2L_6_15495001 chr2L_15495001 RAL-374 310 chr2L 15527086 15527105 chr2L 15527387 15527412 6 302 4.0 2.0 3.0 1.5 326 chr2L 15527086 intergenic not near genes chr2L 15527249 intergenic not near genes chr2L 15527412 intergenic not near genes chr2L_6_15525001 chr2L_15525001 RAL-374 311 chr2L 15586390 15586425 chr2L 15593462 15593495 297 6 7072 2.5 0.0 1.2 2.7 7105 chr2L 15586390 intergenic not near genes chr2L 15589942 intergenic not near genes chr2L 15593495 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-374 312 chr2L 15823701 15823747 chr2L 15823801 15823849 7 100 3.5 4.5 4.0 1.4 148 chr2L 15823701 intergenic not near genes chr2L 15823775 intergenic not near genes chr2L 15823849 intergenic not near genes chr2L_7_15820001 chr2L_15820001 RAL-374 313 chr2L 15915631 15915679 chr2L 15915729 15915777 11 97 2.0 2.0 2.0 3.7 146 chr2L 15915631 intron beat-Ib - chr2L 15915704 intron beat-Ib - chr2L 15915777 intron beat-Ib - chr2L_11_15915001 chr2L_15915001 RAL-374 314 chr2L 15956004 15956050 chr2L 15957491 15957523 hobo 13 1480 1.5 1.5 1.5 5.2 1519 chr2L 15956004 intron beat-Ib - chr2L 15956764 intron beat-Ib - chr2L 15957523 intron beat-Ib - chr2L_13_15955001 chr2L_15955001 RAL-374 315 chr2L 16005546 16005574 chr2L 16005667 16005696 4 122 0.5 1.0 0.8 2.2 150 chr2L 16005546 intron beat-Ic + chr2L 16005621 intron beat-Ic + chr2L 16005696 intron beat-Ic + chr2L_4_16005001 chr2L_16005001 RAL-374 316 chr2L 16071771 16071771 chr2L 16217659 16217661 copia 17 145889 9.5 16.0 12.8 1.2 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_17_16140001 chr2L_16140001 RAL-374 317 chr2L 16141149 16141187 chr2L 16146372 16146414 copia 5 5226 4.5 2.0 3.2 1.2 5265 chr2L 16141149 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146414 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-374 318 chr2L 16197101 16197151 chr2L 16197792 16197847 8 692 3.5 2.0 2.8 2.1 746 chr2L 16197101 intergenic not near genes chr2L 16197474 intergenic not near genes chr2L 16197847 intergenic not near genes chr2L_8_16195001 chr2L_16195001 RAL-374 319 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133321 13.0 16.0 14.5 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-374 320 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 14 145889 9.5 16.0 12.8 1.0 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_14_16140001 chr2L_16140001 RAL-374 321 chr2L 16224781 16224799 chr2L 16224910 16224928 4 128 4.5 0.5 2.5 1.1 147 chr2L 16224781 intergenic not near genes chr2L 16224854 intergenic not near genes chr2L 16224928 intergenic not near genes chr2L_4_16220001 chr2L_16220001 RAL-374 322 chr2L 16243684 16243841 chr2L 16243775 16243956 14 110 3.0 1.5 2.2 4.4 272 chr2L 16243684 exon CG42818 + chr2L 16243820 exon CG42818 + chr2L 16243956 exon CG42818 + chr2L_14_16240001 chr2L_16240001 RAL-374 323 chr2L 16254884 16254913 chr2L 16255163 16255192 5 279 4.0 3.0 3.5 1.1 308 chr2L 16254884 intron PRL-1 - chr2L 16255038 intron PRL-1 - chr2L 16255192 intron PRL-1 - chr2L_5_16255001 chr2L_16255001 RAL-374 324 chr2L 16280236 16280285 chr2L 16281427 16281474 1360 6 1182 1.0 2.5 1.8 2.1 1238 chr2L 16280236 intron crp - chr2L 16280855 intron crp - chr2L 16281474 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-374 325 chr2L 16356902 16356941 chr2L 16356998 16357037 5 95 0.0 2.0 1.0 2.5 135 chr2L 16356902 intergenic CaBP1 - chr2L 16356970 intergenic CaBP1 - chr2L 16357037 intergenic CaBP1 - chr2L_5_16355001 chr2L_16355001 RAL-374 326 chr2L 16374306 16374351 chr2L 16374407 16374452 5 100 2.0 4.0 3.0 1.2 146 chr2L 16374306 intergenic not near genes chr2L 16374379 intergenic not near genes chr2L 16374452 intergenic not near genes chr2L_5_16370001 chr2L_16370001 RAL-374 327 chr2L 16375508 16375552 chr2L 16375626 16375670 13 118 1.0 1.0 1.0 6.5 162 chr2L 16375508 intergenic not near genes chr2L 16375589 intergenic not near genes chr2L 16375670 intergenic not near genes chr2L_13_16375001 chr2L_16375001 RAL-374 328 chr2L 16423512 16423535 chr2L 16423890 16423913 4 378 1.5 1.5 1.5 1.6 401 chr2L 16423512 intron CG5888 - chr2L 16423712 intron CG5888 - chr2L 16423913 intron CG5888 - chr2L_4_16420001 chr2L_16420001 RAL-374 329 chr2L 16535242 16535275 chr2L 16535382 16535415 7 140 3.0 3.5 3.2 1.7 173 chr2L 16535242 intergenic CR45355 - chr2L 16535328 intergenic CR45355 - chr2L 16535415 intergenic CR45355 - chr2L_7_16535001 chr2L_16535001 RAL-374 330 chr2L 16570833 16570861 chr2L 16570929 16570957 5 96 0.0 3.0 1.5 2.0 124 chr2L 16570833 intron CG42389 + chr2L 16570895 intron CG42389 + chr2L 16570957 intron CG42389 + chr2L_5_16570001 chr2L_16570001 RAL-374 331 chr2L 16656908 16656934 chr2L 16657016 16657042 9 107 2.0 3.5 2.8 2.4 134 chr2L 16656908 intron CG42389 + chr2L 16656975 intron CG42389 + chr2L 16657042 intron CG42389 + chr2L_9_16655001 chr2L_16655001 RAL-374 332 chr2L 16799486 16799505 chr2L 16799648 16799667 4 162 0.0 1.5 0.8 2.2 181 chr2L 16799486 intron Ugt36Bc + chr2L 16799576 intron Ugt36Bc + chr2L 16799667 intron Ugt36Bc + chr2L_4_16795001 chr2L_16795001 RAL-374 333 chr2L 16840998 16841037 chr2L 16841094 16841133 9 95 0.0 1.0 0.5 6.0 135 chr2L 16840998 intron,intron SclA +,SclB + chr2L 16841066 intron,intron SclA +,SclB + chr2L 16841133 intron,intron SclA +,SclB + chr2L_9_16840001 chr2L_16840001 RAL-374 334 chr2L 16870098 16870139 chr2L 16870509 16870558 6 418 2.0 1.5 1.8 2.1 460 chr2L 16870098 5` UTR CR31781 + chr2L 16870328 5` UTR CR31781 + chr2L 16870558 5` UTR CR31781 + chr2L_6_16870001 chr2L_16870001 RAL-374 335 chr2L 16968215 16968256 chr2L 16968325 16968366 5 110 1.5 0.5 1.0 2.5 151 chr2L 16968215 intergenic not near genes chr2L 16968290 intergenic not near genes chr2L 16968366 intergenic not near genes chr2L_5_16965001 chr2L_16965001 RAL-374 336 chr2L 17018688 17018733 chr2L 17018784 17018829 9 95 2.5 2.5 2.5 2.6 141 chr2L 17018688 intergenic not near genes chr2L 17018758 intergenic not near genes chr2L 17018829 intergenic not near genes chr2L_9_17015001 chr2L_17015001 RAL-374 337 chr2L 17032488 17032522 chr2L 17032593 17032625 7 105 1.5 3.5 2.5 2.0 137 chr2L 17032488 intergenic not near genes chr2L 17032556 intergenic not near genes chr2L 17032625 intergenic not near genes chr2L_7_17030001 chr2L_17030001 RAL-374 338 chr2L 17102995 17103035 chr2L 17103103 17103143 7 106 2.5 2.0 2.2 2.2 148 chr2L 17102995 intergenic not near genes chr2L 17103069 intergenic not near genes chr2L 17103143 intergenic not near genes chr2L_7_17100001 chr2L_17100001 RAL-374 339 chr2L 17167547 17167576 chr2L 17167808 17167837 pogo 5 261 3.0 2.5 2.8 1.3 290 chr2L 17167547 intron,intron CG34106 +,beat-IIIa + chr2L 17167692 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-374 340 chr2L 17208127 17208164 chr2L 17208236 17208273 7 105 3.0 2.0 2.5 2.0 146 chr2L 17208127 intron beat-IIIc - chr2L 17208200 intron beat-IIIc - chr2L 17208273 intron beat-IIIc - chr2L_7_17205001 chr2L_17205001 RAL-374 341 chr2L 17261201 17261231 chr2L 17261312 17261342 5 111 1.5 1.5 1.5 2.0 141 chr2L 17261201 intergenic beat-IIIc - chr2L 17261272 intergenic not near genes chr2L 17261342 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-374 342 chr2L 17264724 17264775 chr2L 17264824 17264875 7 100 1.5 1.5 1.5 2.8 151 chr2L 17264724 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264875 intergenic not near genes chr2L_7_17260001 chr2L_17260001 RAL-374 343 chr2L 17273173 17273192 chr2L 17277976 17277988 F-element 4 4801 3.0 3.0 3.0 1.0 4815 chr2L 17273173 intergenic not near genes chr2L 17275580 intergenic not near genes chr2L 17277988 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-374 344 chr2L 17273203 17273225 chr2L 17277971 17278028 F-element 5 4796 1.5 3.0 2.2 1.6 4825 chr2L 17273203 intergenic not near genes chr2L 17275616 intergenic not near genes chr2L 17278028 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-374 345 chr2L 17292871 17292910 chr2L 17292961 17293008 4 92 5.0 4.0 4.5 0.7 137 chr2L 17292871 intergenic not near genes chr2L 17292940 intergenic not near genes chr2L 17293008 intergenic not near genes chr2L_4_17290001 chr2L_17290001 RAL-374 346 chr2L 17294260 17294300 chr2L 17294552 17294588 6 290 3.5 2.0 2.8 1.6 328 chr2L 17294260 intergenic not near genes chr2L 17294424 intergenic not near genes chr2L 17294588 intergenic not near genes chr2L_6_17290001 chr2L_17290001 RAL-374 347 chr2L 17327905 17327923 chr2L 17328011 17328028 6 104 6.0 2.5 4.2 1.2 123 chr2L 17327905 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328028 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-374 348 chr2L 17329059 17329097 chr2L 17329203 17329245 7 147 1.5 1.5 1.5 2.8 186 chr2L 17329059 intergenic not near genes chr2L 17329152 intergenic not near genes chr2L 17329245 intergenic not near genes chr2L_7_17325001 chr2L_17325001 RAL-374 349 chr2L 17335536 17335579 chr2L 17336722 17336730 1360 6 1180 0.0 3.5 1.8 2.1 1194 chr2L 17335536 intergenic not near genes chr2L 17336133 intergenic not near genes chr2L 17336730 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-374 350 chr2L 17344859 17344892 chr2L 17344956 17344989 8 97 3.5 2.0 2.8 2.1 130 chr2L 17344859 intergenic not near genes chr2L 17344924 intergenic not near genes chr2L 17344989 intergenic not near genes chr2L_8_17340001 chr2L_17340001 RAL-374 351 chr2L 17353034 17353071 chr2L 17353131 17353169 6 97 5.0 0.5 2.8 1.6 135 chr2L 17353034 intergenic not near genes chr2L 17353102 intergenic not near genes chr2L 17353169 intergenic not near genes chr2L_6_17350001 chr2L_17350001 RAL-374 352 chr2L 17425755 17425796 chr2L 17425902 17425943 7 147 3.5 4.5 4.0 1.4 188 chr2L 17425755 intron Dif - chr2L 17425849 intron Dif - chr2L 17425943 intron Dif - chr2L_7_17425001 chr2L_17425001 RAL-374 353 chr2L 17516292 17516316 chr2L 17516408 17516432 5 116 4.5 2.5 3.5 1.1 140 chr2L 17516292 intron Dhc36C + chr2L 17516362 intron Dhc36C + chr2L 17516432 intron Dhc36C + chr2L_5_17515001 chr2L_17515001 RAL-374 354 chr2L 17517843 17517875 chr2L 17517946 17517978 6 100 4.0 0.5 2.2 1.9 135 chr2L 17517843 intron Dhc36C + chr2L 17517910 intron Dhc36C + chr2L 17517978 intron Dhc36C + chr2L_6_17515001 chr2L_17515001 RAL-374 355 chr2L 17669098 17669123 chr2L 17669193 17669219 5 96 1.5 3.5 2.5 1.4 121 chr2L 17669098 intron CadN - chr2L 17669158 intron CadN - chr2L 17669219 intron CadN - chr2L_5_17665001 chr2L_17665001 RAL-374 356 chr2L 17698382 17698403 chr2L 17698579 17698625 6 219 0.0 1.5 0.8 3.3 243 chr2L 17698382 intron CadN - chr2L 17698504 intron CadN - chr2L 17698625 intron CadN - chr2L_6_17695001 chr2L_17695001 RAL-374 357 chr2L 17701940 17701982 chr2L 17702050 17702093 7 104 1.5 4.0 2.8 1.8 153 chr2L 17701940 intron CadN - chr2L 17702016 intron CadN - chr2L 17702093 intron CadN - chr2L_7_17700001 chr2L_17700001 RAL-374 358 chr2L 17709109 17709150 chr2L 17709213 17709254 10 104 1.5 2.0 1.8 3.6 145 chr2L 17709109 intron CadN - chr2L 17709182 intron CadN - chr2L 17709254 intron CadN - chr2L_10_17705001 chr2L_17705001 RAL-374 359 chr2L 17710014 17710055 chr2L 17710130 17710171 7 116 2.0 3.0 2.5 2.0 157 chr2L 17710014 intron CadN - chr2L 17710092 intron CadN - chr2L 17710171 intron CadN - chr2L_7_17710001 chr2L_17710001 RAL-374 360 chr2L 17741130 17741173 chr2L 17741234 17741277 6 104 2.0 2.0 2.0 2.0 147 chr2L 17741130 intron CadN - chr2L 17741204 intron CadN - chr2L 17741277 intron CadN - chr2L_6_17740001 chr2L_17740001 RAL-374 361 chr2L 17819904 17819953 chr2L 17825127 17825170 copia 6 5218 1.5 3.0 2.2 1.9 5266 chr2L 17819904 intron CadN2 - chr2L 17822537 intron CadN2 - chr2L 17825170 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-374 362 chr2L 17837156 17837182 chr2L 17837261 17837302 6 108 2.5 2.5 2.5 1.7 146 chr2L 17837156 intron CadN2 - chr2L 17837229 intron CadN2 - chr2L 17837302 intron CadN2 - chr2L_6_17835001 chr2L_17835001 RAL-374 363 chr2L 17842609 17842640 chr2L 17842714 17842728 6 102 1.5 1.5 1.5 2.4 119 chr2L 17842609 intron CadN2 - chr2L 17842668 intron CadN2 - chr2L 17842728 intron CadN2 - chr2L_6_17840001 chr2L_17840001 RAL-374 364 chr2L 17867888 17867908 chr2L 17868029 17868070 4 157 2.5 4.0 3.2 1.0 182 chr2L 17867888 intron CadN2 - chr2L 17867979 intron CadN2 - chr2L 17868070 intron CadN2 - chr2L_4_17865001 chr2L_17865001 RAL-374 365 chr2L 17898668 17898686 chr2L 17898829 17898853 4 165 2.5 1.5 2.0 1.3 185 chr2L 17898668 intergenic not near genes chr2L 17898760 intergenic not near genes chr2L 17898853 intergenic not near genes chr2L_4_17895001 chr2L_17895001 RAL-374 366 chr2L 17906748 17906784 chr2L 17906848 17906887 10 102 2.0 1.5 1.8 3.6 139 chr2L 17906748 intergenic not near genes chr2L 17906818 intergenic not near genes chr2L 17906887 intergenic not near genes chr2L_10_17905001 chr2L_17905001 RAL-374 367 chr2L 17911939 17911979 chr2L 17914137 17914177 pogo 5 2192 3.0 4.5 3.8 1.0 2238 chr2L 17911939 intergenic not near genes chr2L 17913058 intergenic not near genes chr2L 17914177 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-374 368 chr2L 17943584 17943628 chr2L 17943680 17943724 10 96 6.5 3.0 4.8 1.7 140 chr2L 17943584 intergenic not near genes chr2L 17943654 intergenic not near genes chr2L 17943724 intergenic not near genes chr2L_10_17940001 chr2L_17940001 RAL-374 369 chr2L 17951928 17951974 chr2L 17953414 17953427 hobo 13 1484 3.0 6.5 4.8 2.2 1499 chr2L 17951928 intergenic CR44398 -,CR44397 - chr2L 17952678 intergenic not near genes chr2L 17953427 intergenic not near genes chr2L_13_17950001 chr2L_17950001 RAL-374 370 chr2L 18051862 18051902 chr2L 18061028 18061069 roo 7 9165 3.5 4.5 4.0 1.4 9207 chr2L 18051862 intron rdo + chr2L 18056466 intron rdo + chr2L 18061069 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-374 371 chr2L 18197462 18197503 chr2L 18197561 18197601 8 99 0.5 3.0 1.8 2.9 139 chr2L 18197462 intron CG42750 - chr2L 18197532 intron CG42750 - chr2L 18197601 intron CG42750 - chr2L_8_18195001 chr2L_18195001 RAL-374 372 chr2L 18239948 18239990 chr2L 18240050 18240093 6 102 4.0 1.0 2.5 1.7 145 chr2L 18239948 intron CG42750 - chr2L 18240020 intron CG42750 - chr2L 18240093 intron CG42750 - chr2L_6_18240001 chr2L_18240001 RAL-374 373 chr2L 18315245 18315273 chr2L 18315342 18315373 6 99 3.0 1.5 2.2 1.9 128 chr2L 18315245 intergenic not near genes chr2L 18315309 intergenic not near genes chr2L 18315373 intergenic not near genes chr2L_6_18315001 chr2L_18315001 RAL-374 374 chr2L 18364247 18364283 chr2L 18364367 18364402 4 119 2.0 1.5 1.8 1.4 155 chr2L 18364247 intron Fas3 + chr2L 18364324 intron Fas3 + chr2L 18364402 intron Fas3 + chr2L_4_18360001 chr2L_18360001 RAL-374 375 chr2L 18408014 18408044 chr2L 18412818 18412839 Doc 6 4802 7.5 4.0 5.8 0.9 4825 chr2L 18408014 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-374 376 chr2L 18812539 18812585 chr2L 18812822 18812868 5 278 0.5 2.0 1.2 2.3 329 chr2L 18812539 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812868 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-374 377 chr2L 18883836 18883881 chr2L 18883936 18883982 9 101 5.0 4.0 4.5 1.6 146 chr2L 18883836 intergenic not near genes chr2L 18883909 intergenic not near genes chr2L 18883982 intergenic not near genes chr2L_9_18880001 chr2L_18880001 RAL-374 378 chr2L 18898386 18898413 chr2L 18898486 18898515 6 102 4.0 0.0 2.0 2.0 129 chr2L 18898386 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898515 intergenic not near genes chr2L_6_18895001 chr2L_18895001 RAL-374 379 chr2L 18898414 18898425 chr2L 18898477 18898526 8 96 3.0 0.0 1.5 3.2 112 chr2L 18898414 intergenic not near genes chr2L 18898470 intergenic not near genes chr2L 18898526 intergenic not near genes chr2L_8_18895001 chr2L_18895001 RAL-374 380 chr2L 18902612 18902649 chr2L 18902913 18902949 10 300 3.0 2.5 2.8 2.6 337 chr2L 18902612 intergenic not near genes chr2L 18902780 intergenic not near genes chr2L 18902949 intergenic not near genes chr2L_10_18900001 chr2L_18900001 RAL-374 381 chr2L 18997711 18997749 chr2L 18997996 18998026 17 281 2.5 2.5 2.5 4.9 315 chr2L 18997711 intron CG31792 + chr2L 18997868 intron CG31792 + chr2L 18998026 exon CG31792 + chr2L_17_18995001 chr2L_18995001 RAL-374 382 chr2L 19024096 19024097 chr2L 21768291 21768291 5 2744195 6.0 11.0 8.5 0.5 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-374 383 chr2L 19070256 19070274 chr2L 19070365 19070384 6 110 6.5 2.0 4.2 1.2 128 chr2L 19070256 intergenic CG10702 - chr2L 19070320 intergenic CG10702 - chr2L 19070384 intergenic not near genes chr2L_6_19070001 chr2L_19070001 RAL-374 384 chr2L 19070283 19070291 chr2L 19070361 19070379 5 92 6.0 1.5 3.8 1.0 96 chr2L 19070283 intergenic CG10702 - chr2L 19070331 intergenic CG10702 - chr2L 19070379 intergenic not near genes chr2L_5_19070001 chr2L_19070001 RAL-374 385 chr2L 19147350 19147388 chr2L 19154404 19154443 297 5 7055 4.5 4.5 4.5 0.9 7093 chr2L 19147350 intron brat + chr2L 19150896 intron brat + chr2L 19154443 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-374 386 chr2L 19159026 19159071 chr2L 19159162 19159198 12 139 3.0 4.5 3.8 2.5 172 chr2L 19159026 intron,3` UTR brat +,CR44977 - chr2L 19159112 intron,3` UTR brat +,CR44977 - chr2L 19159198 intron,3` UTR brat +,CR44977 - chr2L_12_19155001 chr2L_19155001 RAL-374 387 chr2L 19251377 19251397 chr2L 19251816 19251836 6 438 5.0 4.0 4.5 1.1 459 chr2L 19251377 intergenic not near genes chr2L 19251606 intergenic not near genes chr2L 19251836 intergenic not near genes chr2L_6_19250001 chr2L_19250001 RAL-374 388 chr2L 19309601 19309651 chr2L 19309699 19309751 14 95 3.0 5.0 4.0 2.8 150 chr2L 19309601 intergenic not near genes chr2L 19309676 intergenic not near genes chr2L 19309751 intergenic not near genes chr2L_14_19305001 chr2L_19305001 RAL-374 389 chr2L 19345001 19345037 chr2L 19357230 19357266 blood 13 12226 6.5 3.0 4.8 2.2 12265 chr2L 19345001 intron dnt - chr2L 19351134 intron dnt - chr2L 19357266 intron dnt - chr2L_13_19350001 chr2L_19350001 RAL-374 390 chr2L 19357527 19357568 chr2L 19357636 19357678 13 107 4.0 3.5 3.8 2.7 151 chr2L 19357527 intron dnt - chr2L 19357602 intron dnt - chr2L 19357678 intron dnt - chr2L_13_19355001 chr2L_19355001 RAL-374 391 chr2L 19361692 19361740 chr2L 19361799 19361845 6 106 2.0 4.0 3.0 1.5 153 chr2L 19361692 intron dnt - chr2L 19361768 intron dnt - chr2L 19361845 intron dnt - chr2L_6_19360001 chr2L_19360001 RAL-374 392 chr2L 19441045 19441088 chr2L 19441142 19441184 11 96 6.5 3.5 5.0 1.8 139 chr2L 19441045 intron CG10237 - chr2L 19441114 intron CG10237 - chr2L 19441184 5` UTR CG10237 - chr2L_11_19440001 chr2L_19440001 RAL-374 393 chr2L 19562510 19562562 chr2L 19562611 19562662 8 100 0.0 3.5 1.8 2.9 152 chr2L 19562510 exon Tep5 + chr2L 19562586 intron Tep5 + chr2L 19562662 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-374 394 chr2L 19608591 19608608 chr2L 19608702 19608717 5 110 1.5 2.0 1.8 1.8 126 chr2L 19608591 intron Lar + chr2L 19608654 intron Lar + chr2L 19608717 intron Lar + chr2L_5_19605001 chr2L_19605001 RAL-374 395 chr2L 19620081 19620122 chr2L 19621090 19621130 jockey 5 1002 4.5 4.0 4.2 1.0 1049 chr2L 19620081 intron Lar + chr2L 19620606 intron Lar + chr2L 19621130 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-374 396 chr2L 19652556 19652594 chr2L 19674004 19674050 opus 7 21454 5.5 1.5 3.5 1.6 21494 chr2L 19652556 intron Lar + chr2L 19663303 intron Lar + chr2L 19674050 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-374 397 chr2L 19703521 19703564 chr2L 19712677 19712704 roo 9 9151 4.5 8.0 6.2 1.2 9183 chr2L 19703521 intron Lar + chr2L 19708112 intron Lar + chr2L 19712704 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-374 398 chr2L 19762799 19762825 chr2L 19763061 19763087 pogo 5 260 1.5 3.5 2.5 1.4 288 chr2L 19762799 5` UTR fbp - chr2L 19762943 intron fbp - chr2L 19763087 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-374 399 chr2L 19773147 19773180 chr2L 19773254 19773287 4 107 3.5 2.5 3.0 1.0 140 chr2L 19773147 intergenic not near genes chr2L 19773217 intergenic not near genes chr2L 19773287 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-374 400 chr2L 19811418 19811453 chr2L 19811630 19811664 7 212 6.0 2.5 4.2 1.3 246 chr2L 19811418 intron sick + chr2L 19811541 intron sick + chr2L 19811664 intron sick + chr2L_7_19810001 chr2L_19810001 RAL-374 401 chr2L 19837256 19837302 chr2L 19837356 19837399 17 98 2.5 2.0 2.2 5.3 143 chr2L 19837256 intron sick + chr2L 19837328 intron sick + chr2L 19837399 intron sick + chr2L_17_19835001 chr2L_19835001 RAL-374 402 chr2L 19846242 19846273 chr2L 19846343 19846374 7 101 0.0 3.0 1.5 2.8 132 chr2L 19846242 intron sick + chr2L 19846308 intron sick + chr2L 19846374 intron sick + chr2L_7_19845001 chr2L_19845001 RAL-374 403 chr2L 19901470 19901516 chr2L 19901592 19901639 10 122 2.5 2.5 2.5 2.9 169 chr2L 19901470 intron sick + chr2L 19901554 intron sick + chr2L 19901639 intron sick + chr2L_10_19900001 chr2L_19900001 RAL-374 404 chr2L 20005850 20005896 chr2L 20010946 20010992 flea 4 5095 2.0 3.0 2.5 1.1 5142 chr2L 20005850 intron CG43861 - chr2L 20008421 intron CG43861 - chr2L 20010992 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-374 405 chr2L 20079497 20079539 chr2L 20079638 20079680 4 141 3.0 0.0 1.5 1.6 183 chr2L 20079497 intron,intron neb +,fok - chr2L 20079588 intron,intron neb +,fok - chr2L 20079680 intron,intron neb +,fok - chr2L_4_20075001 chr2L_20075001 RAL-374 406 chr2L 20272101 20272129 chr2L 20282832 20282853 copia 10 10730 5.0 2.0 3.5 2.2 10752 chr2L 20272101 intergenic not near genes chr2L 20277477 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_10_20275001 chr2L_20275001 RAL-374 407 chr2L 20296493 20296526 chr2L 20296593 20296627 10 101 0.0 1.5 0.8 5.6 134 chr2L 20296493 intergenic CR43414 - chr2L 20296560 intergenic CR43414 - chr2L 20296627 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-374 408 chr2L 20372203 20372255 chr2L 20372473 20372516 pogo 4 268 0.5 4.5 2.5 1.1 313 chr2L 20372203 intergenic Ugt37a1 - chr2L 20372360 intergenic Ugt37a1 - chr2L 20372516 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-374 409 chr2L 20474410 20474428 chr2L 20474850 20474868 4 440 2.5 1.0 1.8 1.4 458 chr2L 20474410 intron CR44980 - chr2L 20474639 intron CR44980 - chr2L 20474868 intron CR44980 - chr2L_4_20470001 chr2L_20470001 RAL-374 410 chr2L 20498678 20498695 chr2L 20498797 20498814 4 119 4.5 3.5 4.0 0.8 136 chr2L 20498678 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498814 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-374 411 chr2L 20553174 20553211 chr2L 20553270 20553307 5 96 2.5 1.5 2.0 1.7 133 chr2L 20553174 intergenic not near genes chr2L 20553240 intergenic not near genes chr2L 20553307 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-374 412 chr2L 20568647 20568676 chr2L 20569057 20569086 X-element 8 409 3.5 2.0 2.8 2.1 439 chr2L 20568647 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569086 intron CR45347 + chr2L_8_20565001 chr2L_20565001 RAL-374 413 chr2L 20572951 20572991 chr2L 20573052 20573096 11 102 2.0 2.5 2.2 3.4 145 chr2L 20572951 intron CR45347 + chr2L 20573024 intron CR45347 + chr2L 20573096 intron CR45347 + chr2L_11_20570001 chr2L_20570001 RAL-374 414 chr2L 20576199 20576247 chr2L 20583687 20583734 blood 9 7488 4.5 2.5 3.5 2.0 7535 chr2L 20576199 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583734 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-374 415 chr2L 20589477 20589523 chr2L 20589572 20589620 14 93 3.5 4.0 3.8 2.9 143 chr2L 20589477 intron CR44909 - chr2L 20589548 intron CR44909 - chr2L 20589620 intron CR44909 - chr2L_14_20585001 chr2L_20585001 RAL-374 416 chr2L 20597074 20597120 chr2L 20597171 20597217 9 92 1.5 3.0 2.2 2.8 143 chr2L 20597074 intron CR44909 - chr2L 20597146 intron CR44909 - chr2L 20597217 intron CR44909 - chr2L_9_20595001 chr2L_20595001 RAL-374 417 chr2L 20668671 20668717 chr2L 20668767 20668813 12 96 2.5 4.5 3.5 2.7 142 chr2L 20668671 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668813 intron CG31678 - chr2L_12_20665001 chr2L_20665001 RAL-374 418 chr2L 20674812 20674862 chr2L 20674917 20674960 9 100 2.0 0.0 1.0 4.5 148 chr2L 20674812 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674960 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-374 419 chr2L 20695784 20695825 chr2L 20695892 20695933 5 108 2.0 4.0 3.0 1.2 149 chr2L 20695784 intron Hr38 - chr2L 20695858 intron Hr38 - chr2L 20695933 intron Hr38 - chr2L_5_20695001 chr2L_20695001 RAL-374 420 chr2L 20780986 20781021 chr2L 20781109 20781130 5 119 3.0 2.0 2.5 1.4 144 chr2L 20780986 intron cad + chr2L 20781058 intron cad + chr2L 20781130 intron cad + chr2L_5_20780001 chr2L_20780001 RAL-374 421 chr2L 20818491 20818540 chr2L 20818591 20818642 6 101 2.5 3.5 3.0 1.5 151 chr2L 20818491 exon CheB38a - chr2L 20818566 intergenic CheB38a - chr2L 20818642 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-374 422 chr2L 20835792 20835829 chr2L 20836529 20836566 Quasimodo 8 737 2.5 3.0 2.8 2.1 774 chr2L 20835792 5` UTR Oseg5 - chr2L 20836179 intergenic Oseg5 -,Spn38F - chr2L 20836566 intergenic Spn38F - chr2L_8_20835001 chr2L_20835001 RAL-374 423 chr2L 20891515 20891544 chr2L 20896636 20896665 jockey 5 5121 4.5 2.5 3.5 1.1 5150 chr2L 20891515 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896665 intron,intron CG43739 -,sky - chr2L_5_20890001 chr2L_20890001 RAL-374 424 chr2L 20927269 20927288 chr2L 20927530 20927554 4 262 12.5 16.5 14.5 0.3 285 chr2L 20927269 exon CG9272 - chr2L 20927412 exon CG9272 - chr2L 20927554 exon CG9272 - chr2L_4_20925001 chr2L_20925001 RAL-374 425 chr2L 20946926 20946955 chr2L 20947033 20947062 6 101 5.0 3.0 4.0 1.2 136 chr2L 20946926 intergenic CR44606 - chr2L 20946994 intergenic CR44606 - chr2L 20947062 intergenic CR44606 - chr2L_6_20945001 chr2L_20945001 RAL-374 426 chr2L 20967068 20967102 chr2L 20967173 20967208 6 104 3.0 1.0 2.0 2.0 140 chr2L 20967068 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967208 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-374 427 chr2L 20976637 20976665 chr2L 20981472 20981497 X-element 6 4834 5.5 4.5 5.0 1.0 4860 chr2L 20976637 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981497 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-374 428 chr2L 21019333 21019352 chr2L 21019458 21019464 4 126 2.0 1.0 1.5 1.6 131 chr2L 21019333 intron CG42238 - chr2L 21019398 intron CG42238 - chr2L 21019464 intron CG42238 - chr2L_4_21015001 chr2L_21015001 RAL-374 429 chr2L 21020257 21020311 chr2L 21023954 21024008 NOF 6 3690 2.5 1.5 2.0 2.0 3751 chr2L 21020257 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21024008 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-374 430 chr2L 21035374 21035430 chr2L 21035503 21035534 12 123 3.0 2.5 2.8 3.2 160 chr2L 21035374 intron CG42238 - chr2L 21035454 intron CG42238 - chr2L 21035534 intron CG42238 - chr2L_12_21035001 chr2L_21035001 RAL-374 431 chr2L 21041127 21041164 chr2L 21049408 21049445 Tirant 10 8278 5.0 6.0 5.5 1.5 8318 chr2L 21041127 intron CG42238 - chr2L 21045286 intron CG42238 - chr2L 21049445 intron CG42238 - chr2L_10_21045001 chr2L_21045001 RAL-374 432 chr2L 21086425 21086440 chr2L 21086560 21086574 4 134 4.0 4.5 4.2 0.8 149 chr2L 21086425 5` UTR CG33509 - chr2L 21086500 5` UTR CG33509 - chr2L 21086574 intergenic CG33509 -,ppk13 - chr2L_4_21085001 chr2L_21085001 RAL-374 433 chr2L 21088899 21088950 chr2L 21089001 21089053 13 99 1.5 3.0 2.2 4.1 154 chr2L 21088899 intergenic ppk13 -,CG9259 + chr2L 21088976 intergenic ppk13 -,CG9259 + chr2L 21089053 intergenic ppk13 -,CG9259 + chr2L_13_21085001 chr2L_21085001 RAL-374 434 chr2L 21158860 21158905 chr2L 21158957 21159002 5 97 4.5 1.5 3.0 1.2 142 chr2L 21158860 intergenic CG9248 +,CG9249 - chr2L 21158931 5` UTR CG9248 + chr2L 21159002 5` UTR CG9248 + chr2L_5_21155001 chr2L_21155001 RAL-374 435 chr2L 21245259 21245298 chr2L 21245520 21245528 5 254 0.0 2.5 1.2 2.3 269 chr2L 21245259 intron Hr39 + chr2L 21245394 intron Hr39 + chr2L 21245528 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-374 436 chr2L 21286591 21286626 chr2L 21286689 21286723 6 98 3.0 3.0 3.0 1.5 132 chr2L 21286591 exon Mio - chr2L 21286657 intron Mio - chr2L 21286723 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-374 437 chr2L 21347543 21347581 chr2L 21355031 21355049 blood 4 7483 2.0 2.0 2.0 1.3 7506 chr2L 21347543 intron Tsp39D + chr2L 21351296 intron Tsp39D + chr2L 21355049 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-374 438 chr2L 21355587 21355630 chr2L 21355752 21355795 6 165 1.5 2.0 1.8 2.1 208 chr2L 21355587 exon Tsp39D + chr2L 21355691 intron Tsp39D + chr2L 21355795 intron Tsp39D + chr2L_6_21355001 chr2L_21355001 RAL-374 439 chr2L 21597023 21597057 chr2L 21604787 21604820 roo 7 7764 1.0 3.5 2.2 2.2 7797 chr2L 21597023 intergenic not near genes chr2L 21600922 intergenic not near genes chr2L 21604820 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-374 440 chr2L 21665641 21665669 chr2L 21665745 21665771 5 103 2.0 1.5 1.8 1.8 130 chr2L 21665641 intron CG2225 - chr2L 21665706 intron CG2225 - chr2L 21665771 intron CG2225 - chr2L_5_21665001 chr2L_21665001 RAL-374 441 chr2L 21757723 21757765 chr2L 21757819 21757861 5 96 1.5 2.0 1.8 1.8 138 chr2L 21757723 intergenic step -,CG1416 + chr2L 21757792 intergenic CG1416 +,step - chr2L 21757861 intergenic CG1416 +,step - chr2L_5_21755001 chr2L_21755001 RAL-374 442 chr2L 21819316 21819361 chr2L 21819424 21819439 8 98 3.0 4.0 3.5 1.8 123 chr2L 21819316 intergenic CR44786 + chr2L 21819378 intergenic CR44786 + chr2L 21819439 intergenic CR44786 + chr2L_8_21815001 chr2L_21815001 RAL-374 443 chr2L 21855459 21855496 chr2L 21855564 21855603 5 106 3.5 1.5 2.5 1.4 144 chr2L 21855459 intron CR44917 + chr2L 21855531 intron CR44917 + chr2L 21855603 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-374 444 chr2L 21859309 21859342 chr2L 21859400 21859442 15 97 4.0 3.0 3.5 3.3 133 chr2L 21859309 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859442 intron CR44917 + chr2L_15_21855001 chr2L_21855001 RAL-374 445 chr2L 21981664 21981708 chr2L 21990849 21990889 roo 9 9181 1.0 7.5 4.2 1.7 9225 chr2L 21981664 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990889 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-374 446 chr2L 22047235 22047257 chr2L 22047380 22047401 4 144 2.5 6.5 4.5 0.7 166 chr2L 22047235 intergenic not near genes chr2L 22047318 intergenic not near genes chr2L 22047401 intergenic not near genes chr2L_4_22045001 chr2L_22045001 RAL-374 447 chr2L 22212123 22212157 chr2L 22212686 22212722 6 566 0.5 1.5 1.0 3.0 599 chr2L 22212123 intron Ir40a - chr2L 22212422 intron Ir40a - chr2L 22212722 intron Ir40a - chr2L_6_22210001 chr2L_22210001 RAL-374 448 chr2L 22239425 22239458 chr2L 22239506 22239558 4 96 1.5 2.0 1.8 1.4 133 chr2L 22239425 intron CR43765 - chr2L 22239492 3` UTR CR43765 - chr2L 22239558 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-374 449 chr2L 22350261 22350294 chr2L 22350368 22350410 8 112 2.5 2.5 2.5 2.3 149 chr2L 22350261 intron CG17018 + chr2L 22350336 intron CG17018 + chr2L 22350410 intron CG17018 + chr2L_8_22350001 chr2L_22350001 RAL-374 450 chr2L 22510390 22510441 chr2L 22510619 22510643 4 218 3.5 1.5 2.5 1.1 253 chr2L 22510390 intergenic not near genes chr2L 22510516 intergenic not near genes chr2L 22510643 intergenic not near genes chr2L_4_22510001 chr2L_22510001 RAL-374 451 chr2L 22545964 22546011 chr2L 22546080 22546108 10 111 5.0 1.5 3.2 2.4 144 chr2L 22545964 intron CG17490 + chr2L 22546036 intron CG17490 + chr2L 22546108 intron CG17490 + chr2L_10_22545001 chr2L_22545001 RAL-374 452 chr2L 22548924 22548941 chr2L 22550169 22550186 1360 6 1245 0.5 8.0 4.2 1.2 1262 chr2L 22548924 intergenic CG17490 + chr2L 22549555 intergenic not near genes chr2L 22550186 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-374 453 chr2L 22674048 22674081 chr2L 22674145 22674176 6 96 5.0 0.0 2.5 1.7 128 chr2L 22674048 intron CG40006 - chr2L 22674112 intron CG40006 - chr2L 22674176 intron CG40006 - chr2L_6_22670001 chr2L_22670001 RAL-374 454 chr2L 22676116 22676151 chr2L 22676374 22676409 7 258 0.5 2.0 1.2 3.2 293 chr2L 22676116 intron CG40006 - chr2L 22676262 intron CG40006 - chr2L 22676409 intron CG40006 - chr2L_7_22675001 chr2L_22675001 RAL-374 455 chr2L 22679801 22679822 chr2L 22684569 22684613 F-element 6 4788 1.0 2.0 1.5 2.4 4812 chr2L 22679801 intron CG40006 - chr2L 22682207 intron CG40006 - chr2L 22684613 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-374 456 chr2L 22693900 22693919 chr2L 22694007 22694026 6 107 0.0 2.5 1.2 2.7 126 chr2L 22693900 intron CG40006 - chr2L 22693963 intron CG40006 - chr2L 22694026 intron CG40006 - chr2L_6_22690001 chr2L_22690001 RAL-374 457 chr2L 22776404 22776448 chr2L 22778213 22778257 S-element 6 1809 1.0 2.5 1.8 2.1 1853 chr2L 22776404 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778257 intergenic not near genes chr2L_6_22775001 chr2L_22775001 RAL-374 458 chr2L 23168875 23168884 chr2L 23168933 23168980 4 85 4.0 4.0 4.0 0.8 105 chr2L 23168875 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168928 intron CG12567 - chr2L 23168980 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-374 459 chr2R 552783 552789 chr2R 553969 553985 1360 5 1200 1.0 3.5 2.2 1.6 1202 chr2R 552783 intron CG40378 + chr2R 553384 intron CG40378 + chr2R 553985 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-374 460 chr2R 1082376 1082382 chr2R 1087131 1087140 Doc 6 4770 4.0 5.0 4.5 1.1 4764 chr2R 1082376 intron rl + chr2R 1084758 intron rl + chr2R 1087140 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-374 461 chr2R 1365855 1365886 chr2R 1365987 1366015 13 130 2.5 2.5 2.5 3.7 160 chr2R 1365855 intron l(2)41Ab + chr2R 1365935 intron l(2)41Ab + chr2R 1366015 intron l(2)41Ab + chr2R_13_1365001 chr2R_1365001 RAL-374 462 chr2R 1516585 1516600 chr2R 1521333 1521348 1731 8 4748 8.5 2.0 5.2 1.3 4763 chr2R 1516585 exon Maf1 - chr2R 1518966 intron Maf1 - chr2R 1521348 5` UTR Maf1 - chr2R_8_1515001 chr2R_1515001 RAL-374 463 chr2R 1600548 1600553 chr2R 1600963 1600967 4 415 18.5 17.5 18.0 0.2 419 chr2R 1600548 intergenic not near genes chr2R 1600758 intergenic not near genes chr2R 1600967 intergenic not near genes chr2R_4_1600001 chr2R_1600001 RAL-374 464 chr2R 1600564 1600577 chr2R 1600962 1600993 7 412 19.0 17.5 18.2 0.4 429 chr2R 1600564 intergenic not near genes chr2R 1600778 intergenic not near genes chr2R 1600993 intergenic not near genes chr2R_7_1600001 chr2R_1600001 RAL-374 465 chr2R 2015118 2015161 chr2R 2015214 2015257 12 96 3.5 3.0 3.2 2.9 139 chr2R 2015118 intron CG17684 - chr2R 2015188 intron CG17684 - chr2R 2015257 intron CG17684 - chr2R_12_2015001 chr2R_2015001 RAL-374 466 chr2R 2053787 2053821 chr2R 2053890 2053894 5 96 2.0 2.0 2.0 1.7 107 chr2R 2053787 intron CG17684 - chr2R 2053840 intron CG17684 - chr2R 2053894 intron CG17684 - chr2R_5_2050001 chr2R_2050001 RAL-374 467 chr2R 2498970 2499009 chr2R 2508137 2508176 roo 10 9167 4.5 3.0 3.8 2.1 9206 chr2R 2498970 intron MFS17 - chr2R 2503573 intron MFS17 - chr2R 2508176 intron MFS17 - chr2R_10_2500001 chr2R_2500001 RAL-374 468 chr2R 2508294 2508334 chr2R 2508452 2508482 11 154 4.0 4.0 4.0 2.2 188 chr2R 2508294 intron MFS17 - chr2R 2508388 intron MFS17 - chr2R 2508482 intron MFS17 - chr2R_11_2505001 chr2R_2505001 RAL-374 469 chr2R 2942281 2942316 chr2R 2942402 2942439 5 122 2.0 3.0 2.5 1.4 158 chr2R 2942281 intron Scp1 - chr2R 2942360 intron Scp1 - chr2R 2942439 intron Scp1 - chr2R_5_2940001 chr2R_2940001 RAL-374 470 chr2R 3189860 3189876 chr2R 3190010 3190026 5 150 1.0 1.5 1.2 2.3 166 chr2R 3189860 intron CG42596 + chr2R 3189943 intron CG42596 + chr2R 3190026 intron CG42596 + chr2R_5_3185001 chr2R_3185001 RAL-374 471 chr2R 3293724 3293753 chr2R 3293821 3293851 4 98 3.5 2.0 2.8 1.1 127 chr2R 3293724 intergenic not near genes chr2R 3293788 intergenic not near genes chr2R 3293851 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-374 472 chr2R 3399244 3399261 chr2R 3399326 3399367 4 100 0.0 3.0 1.5 1.6 123 chr2R 3399244 intergenic not near genes chr2R 3399306 intergenic not near genes chr2R 3399367 intergenic not near genes chr2R_4_3395001 chr2R_3395001 RAL-374 473 chr2R 3532613 3532643 chr2R 3536076 3536106 Doc 4 3463 1.5 1.0 1.2 1.8 3493 chr2R 3532613 intergenic not near genes chr2R 3534360 intergenic not near genes chr2R 3536106 intergenic not near genes chr2R_4_3530001 chr2R_3530001 RAL-374 474 chr2R 4622965 4622983 chr2R 4624120 4624162 1360 5 1174 3.0 9.0 6.0 0.7 1197 chr2R 4622965 intergenic CR44101 - chr2R 4623564 intergenic not near genes chr2R 4624162 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-374 475 chr2R 4750324 4750367 chr2R 4751500 4751509 1360 10 1173 2.5 2.0 2.2 3.1 1185 chr2R 4750324 intron conu + chr2R 4750916 intron conu + chr2R 4751509 intron conu + chr2R_10_4750001 chr2R_4750001 RAL-374 476 chr2R 4783404 4783444 chr2R 4783496 4783527 4 92 3.0 2.5 2.8 1.1 123 chr2R 4783404 intergenic not near genes chr2R 4783466 intergenic not near genes chr2R 4783527 intergenic not near genes chr2R_4_4780001 chr2R_4780001 RAL-374 477 chr2R 4821229 4821244 chr2R 4821302 4821349 4 97 1.0 3.5 2.2 1.2 120 chr2R 4821229 intron CG17528 - chr2R 4821289 intron CG17528 - chr2R 4821349 intron CG17528 - chr2R_4_4820001 chr2R_4820001 RAL-374 478 chr2R 4838853 4838897 chr2R 4840395 4840440 transib2 9 1542 5.0 6.5 5.8 1.3 1587 chr2R 4838853 intergenic not near genes chr2R 4839646 intergenic not near genes chr2R 4840440 intergenic not near genes chr2R_9_4835001 chr2R_4835001 RAL-374 479 chr2R 4870726 4870742 chr2R 4871256 4871273 R1A1-element 6 530 4.0 2.0 3.0 1.5 547 chr2R 4870726 intergenic not near genes chr2R 4871000 intergenic not near genes chr2R 4871273 intergenic not near genes chr2R_6_4870001 chr2R_4870001 RAL-374 480 chr2R 5075928 5075976 chr2R 5076070 5076118 7 142 28.5 20.5 24.5 0.3 190 chr2R 5075928 intergenic not near genes chr2R 5076023 intergenic not near genes chr2R 5076118 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-374 481 chr2R 5125246 5125274 chr2R 5125575 5125607 5 335 3.0 3.0 3.0 1.2 361 chr2R 5125246 intron gus - chr2R 5125426 intron gus - chr2R 5125607 intron gus - chr2R_5_5125001 chr2R_5125001 RAL-374 482 chr2R 5417986 5418024 chr2R 5420638 5420675 Burdock 9 2651 2.5 3.0 2.8 2.4 2689 chr2R 5417986 intron laccase2 + chr2R 5419330 intron laccase2 + chr2R 5420675 intron laccase2 + chr2R_9_5415001 chr2R_5415001 RAL-374 483 chr2R 5472346 5472378 chr2R 5472461 5472492 5 113 5.5 2.5 4.0 1.0 146 chr2R 5472346 intron CG30440 - chr2R 5472419 intron CG30440 - chr2R 5472492 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-374 484 chr2R 5509504 5509533 chr2R 5509620 5509649 10 115 4.0 2.0 3.0 2.5 145 chr2R 5509504 intron CG30438 + chr2R 5509576 intron CG30438 + chr2R 5509649 intron CG30438 + chr2R_10_5505001 chr2R_5505001 RAL-374 485 chr2R 5772513 5772548 chr2R 5772625 5772662 10 112 2.0 4.0 3.0 2.5 149 chr2R 5772513 3` UTR Gp210 + chr2R 5772588 3` UTR Gp210 + chr2R 5772662 3` UTR Gp210 + chr2R_10_5770001 chr2R_5770001 RAL-374 486 chr2R 5772821 5772848 chr2R 5772923 5772950 5 102 3.5 3.5 3.5 1.1 129 chr2R 5772821 3` UTR Gp210 + chr2R 5772886 3` UTR Gp210 + chr2R 5772950 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-374 487 chr2R 5790458 5790493 chr2R 5790563 5790598 7 105 1.5 2.5 2.0 2.3 140 chr2R 5790458 intergenic not near genes chr2R 5790528 intergenic not near genes chr2R 5790598 intergenic not near genes chr2R_7_5790001 chr2R_5790001 RAL-374 488 chr2R 5840731 5840781 chr2R 5840834 5840884 10 98 1.0 1.5 1.2 4.5 153 chr2R 5840731 intron dpr12 + chr2R 5840808 intron dpr12 + chr2R 5840884 intron dpr12 + chr2R_10_5840001 chr2R_5840001 RAL-374 489 chr2R 5869255 5869304 chr2R 5874351 5874399 flea 14 5093 2.0 3.0 2.5 4.0 5144 chr2R 5869255 intergenic not near genes chr2R 5871827 intergenic not near genes chr2R 5874399 intergenic not near genes chr2R_14_5870001 chr2R_5870001 RAL-374 490 chr2R 5878917 5878954 chr2R 5879017 5879054 9 97 4.0 6.5 5.2 1.5 137 chr2R 5878917 intergenic CG44438 - chr2R 5878986 intergenic CG44438 - chr2R 5879054 intergenic CG44438 - chr2R_9_5875001 chr2R_5875001 RAL-374 491 chr2R 5885347 5885372 chr2R 5885496 5885521 6 148 2.5 1.5 2.0 2.0 174 chr2R 5885347 5` UTR CR44125 + chr2R 5885434 5` UTR CR44125 + chr2R 5885521 5` UTR CR44125 + chr2R_6_5885001 chr2R_5885001 RAL-374 492 chr2R 5902145 5902163 chr2R 5909723 5909739 17.6 4 7578 1.5 1.5 1.5 1.6 7594 chr2R 5902145 intron CG43366 + chr2R 5905942 intron CG43366 + chr2R 5909739 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-374 493 chr2R 5917752 5917803 chr2R 5917851 5917902 11 96 3.5 2.5 3.0 2.8 150 chr2R 5917752 intron CG43366 + chr2R 5917827 intron CG43366 + chr2R 5917902 intron CG43366 + chr2R_11_5915001 chr2R_5915001 RAL-374 494 chr2R 5934880 5934904 chr2R 5934994 5935021 8 116 0.0 1.0 0.5 5.3 141 chr2R 5934880 intergenic not near genes chr2R 5934950 intergenic not near genes chr2R 5935021 intergenic not near genes chr2R_8_5930001 chr2R_5930001 RAL-374 495 chr2R 6050287 6050298 chr2R 6050400 6050411 8 112 9.0 0.5 4.8 1.4 124 chr2R 6050287 intergenic CG34212 - chr2R 6050349 intergenic CG34212 - chr2R 6050411 intergenic CG34212 - chr2R_8_6050001 chr2R_6050001 RAL-374 496 chr2R 6065733 6065783 chr2R 6065865 6065878 6 122 2.5 3.0 2.8 1.6 145 chr2R 6065733 intron CCHa2-R + chr2R 6065806 intron CCHa2-R + chr2R 6065878 exon CCHa2-R + chr2R_6_6065001 chr2R_6065001 RAL-374 497 chr2R 6088353 6088380 chr2R 6088466 6088493 6 112 3.5 1.5 2.5 1.7 140 chr2R 6088353 intergenic not near genes chr2R 6088423 intergenic not near genes chr2R 6088493 intergenic not near genes chr2R_6_6085001 chr2R_6085001 RAL-374 498 chr2R 6126925 6126961 chr2R 6127053 6127089 6 128 3.0 2.5 2.8 1.6 164 chr2R 6126925 intron EcR - chr2R 6127007 intron EcR - chr2R 6127089 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-374 499 chr2R 6129304 6129356 chr2R 6129402 6129451 11 95 1.0 2.0 1.5 4.4 147 chr2R 6129304 intron EcR - chr2R 6129378 intron EcR - chr2R 6129451 intron EcR - chr2R_11_6125001 chr2R_6125001 RAL-374 500 chr2R 6178104 6178140 chr2R 6178250 6178286 7 145 2.5 3.5 3.0 1.8 182 chr2R 6178104 intergenic not near genes chr2R 6178195 intergenic not near genes chr2R 6178286 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-374 501 chr2R 6494513 6494552 chr2R 6499294 6499333 F-element 5 4781 1.5 1.0 1.2 2.3 4820 chr2R 6494513 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499333 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-374 502 chr2R 6546698 6546745 chr2R 6546819 6546866 11 120 3.0 1.5 2.2 3.4 168 chr2R 6546698 intron jing + chr2R 6546782 intron jing + chr2R 6546866 intron jing + chr2R_11_6545001 chr2R_6545001 RAL-374 503 chr2R 6579781 6579803 chr2R 6584888 6584910 flea 6 5107 0.5 1.5 1.0 3.0 5129 chr2R 6579781 intron jing + chr2R 6582346 intron jing + chr2R 6584910 intron jing + chr2R_6_6580001 chr2R_6580001 RAL-374 504 chr2R 6822384 6822434 chr2R 6822478 6822508 13 85 2.0 1.5 1.8 4.6 124 chr2R 6822384 3` UTR CR44442 - chr2R 6822446 3` UTR CR44442 - chr2R 6822508 3` UTR CR44442 - chr2R_13_6820001 chr2R_6820001 RAL-374 505 chr2R 6831388 6831438 chr2R 6831776 6831806 11 384 0.0 2.0 1.0 5.5 418 chr2R 6831388 intron,3` UTR CG15236 +,CG34215 - chr2R 6831597 intron,exon CG15236 +,CG34215 - chr2R 6831806 intron CG15236 + chr2R_11_6830001 chr2R_6830001 RAL-374 506 chr2R 6876202 6876252 chr2R 6876304 6876353 9 99 2.5 1.5 2.0 3.0 151 chr2R 6876202 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876353 5` UTR,intron CR44169 +,Spn42Da - chr2R_9_6875001 chr2R_6875001 RAL-374 507 chr2R 6948063 6948110 chr2R 6948159 6948204 6 96 2.0 2.0 2.0 2.0 141 chr2R 6948063 intron,intron mim -,CheB42c - chr2R 6948134 intron,intron mim -,CheB42c - chr2R 6948204 intron,intron mim -,CheB42c - chr2R_6_6945001 chr2R_6945001 RAL-374 508 chr2R 6952156 6952184 chr2R 6959756 6959784 opus 5 7600 2.5 1.0 1.8 1.8 7628 chr2R 6952156 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955970 intron,intron mim -,CheB42c - chr2R 6959784 intron,intron mim -,CheB42c - chr2R_5_6955001 chr2R_6955001 RAL-374 509 chr2R 7025879 7025927 chr2R 7025987 7026022 10 100 0.5 3.0 1.8 3.6 143 chr2R 7025879 intron Tsp42Ef + chr2R 7025950 intron Tsp42Ef + chr2R 7026022 intron Tsp42Ef + chr2R_10_7025001 chr2R_7025001 RAL-374 510 chr2R 7434879 7434903 chr2R 7439200 7439224 Juan 5 4321 4.5 6.0 5.2 0.8 4345 chr2R 7434879 intergenic so + chr2R 7437052 intergenic not near genes chr2R 7439224 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-374 511 chr2R 7459261 7459282 chr2R 7459369 7459390 4 108 5.0 1.0 3.0 1.0 129 chr2R 7459261 intergenic Inos -,CG11141 - chr2R 7459326 intergenic CG11141 -,Inos - chr2R 7459390 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-374 512 chr2R 7608394 7608431 chr2R 7613617 7613654 I-element 6 5223 5.5 5.0 5.2 1.0 5260 chr2R 7608394 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613654 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-374 513 chr2R 7629281 7629316 chr2R 7629419 7629454 4 137 0.5 0.5 0.5 2.7 173 chr2R 7629281 intron CG43340 + chr2R 7629368 intron CG43340 + chr2R 7629454 intron CG43340 + chr2R_4_7625001 chr2R_7625001 RAL-374 514 chr2R 7642850 7642885 chr2R 7642948 7642984 13 99 1.0 5.0 3.0 3.2 134 chr2R 7642850 intron CG43340 + chr2R 7642917 intron CG43340 + chr2R 7642984 intron CG43340 + chr2R_13_7640001 chr2R_7640001 RAL-374 515 chr2R 7677405 7677457 chr2R 7677555 7677607 7 146 5.0 2.0 3.5 1.6 202 chr2R 7677405 3` UTR CG1399 - chr2R 7677506 3` UTR CG1399 - chr2R 7677607 3` UTR CG1399 - chr2R_7_7675001 chr2R_7675001 RAL-374 516 chr2R 7815654 7815688 chr2R 7822143 7822177 Burdock 14 6488 6.0 2.5 4.2 2.7 6523 chr2R 7815654 intergenic CG1882 + chr2R 7818916 intergenic not near genes chr2R 7822177 3` UTR cathD - chr2R_14_7815001 chr2R_7815001 RAL-374 517 chr2R 7869173 7869221 chr2R 7873979 7873983 Doc 12 4800 5.0 4.5 4.8 2.1 4810 chr2R 7869173 intron Dgk - chr2R 7871578 intron Dgk - chr2R 7873983 intron Dgk - chr2R_12_7870001 chr2R_7870001 RAL-374 518 chr2R 7915697 7915745 chr2R 7915809 7915857 10 112 2.5 3.5 3.0 2.5 160 chr2R 7915697 intron CG12159 - chr2R 7915777 intron CG12159 - chr2R 7915857 intron CG12159 - chr2R_10_7915001 chr2R_7915001 RAL-374 519 chr2R 8003065 8003077 chr2R 8003181 8003194 4 116 1.5 2.5 2.0 1.3 129 chr2R 8003065 intergenic not near genes chr2R 8003130 intergenic not near genes chr2R 8003194 intergenic not near genes chr2R_4_8000001 chr2R_8000001 RAL-374 520 chr2R 8014100 8014151 chr2R 8014196 8014247 11 96 2.0 2.5 2.2 3.4 147 chr2R 8014100 intergenic CG14762 - chr2R 8014174 intergenic CG14762 - chr2R 8014247 intergenic CG14762 - chr2R_11_8010001 chr2R_8010001 RAL-374 521 chr2R 8026793 8026809 chr2R 8026889 8026905 5 96 0.5 0.5 0.5 3.3 112 chr2R 8026793 intergenic CR45267 + chr2R 8026849 intergenic CR45267 + chr2R 8026905 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 RAL-374 522 chr2R 8036242 8036287 chr2R 8036344 8036387 6 101 0.5 2.0 1.2 2.7 145 chr2R 8036242 intron Optix + chr2R 8036314 intron Optix + chr2R 8036387 intron Optix + chr2R_6_8035001 chr2R_8035001 RAL-374 523 chr2R 8052577 8052628 chr2R 8052677 8052728 14 98 2.5 2.0 2.2 4.4 151 chr2R 8052577 3` UTR CG12769 - chr2R 8052652 3` UTR CG12769 - chr2R 8052728 3` UTR CG12769 - chr2R_14_8050001 chr2R_8050001 RAL-374 524 chr2R 8067044 8067090 chr2R 8067148 8067184 13 103 1.5 2.5 2.0 4.3 140 chr2R 8067044 intron CG17977 - chr2R 8067114 intron CG17977 - chr2R 8067184 exon CG17977 - chr2R_13_8065001 chr2R_8065001 RAL-374 525 chr2R 8089241 8089281 chr2R 8089344 8089387 9 105 3.5 3.0 3.2 2.1 146 chr2R 8089241 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089387 intergenic sut2 +,sut3 + chr2R_9_8085001 chr2R_8085001 RAL-374 526 chr2R 8160915 8160948 chr2R 8161025 8161046 1360 7 107 1.5 5.5 3.5 1.6 131 chr2R 8160915 exon CG8708 - chr2R 8160980 intron CG8708 - chr2R 8161046 intron CG8708 - chr2R_7_8160001 chr2R_8160001 RAL-374 527 chr2R 8191262 8191315 chr2R 8191373 8191427 16 112 3.5 2.0 2.8 4.2 165 chr2R 8191262 intron LRP1 + chr2R 8191344 intron LRP1 + chr2R 8191427 intron LRP1 + chr2R_16_8190001 chr2R_8190001 RAL-374 528 chr2R 8330850 8330888 chr2R 8331356 8331394 roo 8 502 2.5 4.0 3.2 1.9 544 chr2R 8330850 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331394 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-374 529 chr2R 8483947 8483989 chr2R 8484043 8484085 8 95 2.5 3.0 2.8 2.1 138 chr2R 8483947 intron mtt - chr2R 8484016 intron mtt - chr2R 8484085 intron mtt - chr2R_8_8480001 chr2R_8480001 RAL-374 530 chr2R 8488891 8488924 chr2R 8488996 8489027 9 95 5.0 6.0 5.5 1.4 136 chr2R 8488891 intron mtt - chr2R 8488959 intron mtt - chr2R 8489027 intron mtt - chr2R_9_8485001 chr2R_8485001 RAL-374 531 chr2R 8489715 8489759 chr2R 8489814 8489842 5 85 2.0 3.0 2.5 1.4 127 chr2R 8489715 intron mtt - chr2R 8489778 intron mtt - chr2R 8489842 intron mtt - chr2R_5_8485001 chr2R_8485001 RAL-374 532 chr2R 8612282 8612576 chr2R 8612480 8612673 6 130 4.5 1.5 3.0 1.5 391 chr2R 8612282 3` UTR,intron rgr +,CG8642 - chr2R 8612478 intron CG8642 - chr2R 8612673 intron CG8642 - chr2R_6_8610001 chr2R_8610001 RAL-374 533 chr2R 8671796 8671805 chr2R 8671877 8671899 4 92 6.5 5.5 6.0 0.6 103 chr2R 8671796 intron Acsl + chr2R 8671848 intron Acsl + chr2R 8671899 intron Acsl + chr2R_4_8670001 chr2R_8670001 RAL-374 534 chr2R 8671808 8671816 chr2R 8671859 8671913 6 85 6.0 3.5 4.8 1.0 105 chr2R 8671808 intron Acsl + chr2R 8671860 intron Acsl + chr2R 8671913 intron Acsl + chr2R_6_8670001 chr2R_8670001 RAL-374 535 chr2R 8722749 8722785 chr2R 8723007 8723032 pogo 12 254 5.5 3.5 4.5 2.2 283 chr2R 8722749 intron CG14767 - chr2R 8722890 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_12_8720001 chr2R_8720001 RAL-374 536 chr2R 8849216 8849250 chr2R 8849314 8849347 4 98 4.0 1.0 2.5 1.1 131 chr2R 8849216 intron sns + chr2R 8849282 intron sns + chr2R 8849347 intron sns + chr2R_4_8845001 chr2R_8845001 RAL-374 537 chr2R 8951146 8951189 chr2R 8951343 8951383 8 195 2.0 2.5 2.2 2.5 237 chr2R 8951146 intergenic CG33199 -,CG8229 -,Tom7 + chr2R 8951264 intergenic CG33199 -,CG8229 -,Tom7 + chr2R 8951383 intergenic Tom7 +,CG33199 -,CG8229 - chr2R_8_8950001 chr2R_8950001 RAL-374 538 chr2R 8966133 8966180 chr2R 8966243 8966290 14 110 3.0 5.5 4.2 2.7 157 chr2R 8966133 intron CG8216 - chr2R 8966212 intron CG8216 - chr2R 8966290 intron CG8216 - chr2R_14_8965001 chr2R_8965001 RAL-374 539 chr2R 9151292 9151327 chr2R 9157782 9157816 Burdock 6 6490 3.5 3.5 3.5 1.3 6524 chr2R 9151292 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157816 intergenic CG8008 - chr2R_6_9150001 chr2R_9150001 RAL-374 540 chr2R 9212673 9212716 chr2R 9213179 9213222 roo 9 502 3.5 1.5 2.5 2.6 549 chr2R 9212673 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213222 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-374 541 chr2R 9227273 9227305 chr2R 9227369 9227401 4 96 4.0 3.0 3.5 0.9 128 chr2R 9227273 intergenic not near genes chr2R 9227337 intergenic hig - chr2R 9227401 intergenic hig - chr2R_4_9225001 chr2R_9225001 RAL-374 542 chr2R 9368131 9368143 chr2R 9368202 9368220 5 83 2.5 0.0 1.2 2.3 89 chr2R 9368131 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368220 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-374 543 chr2R 9378097 9378129 chr2R 9378199 9378226 6 96 5.5 2.5 4.0 1.2 129 chr2R 9378097 intron CG13954 - chr2R 9378162 intron CG13954 - chr2R 9378226 intron CG13954 - chr2R_6_9375001 chr2R_9375001 RAL-374 544 chr2R 9461235 9461255 chr2R 9461336 9461363 5 104 2.5 6.0 4.2 1.0 128 chr2R 9461235 intron Camta + chr2R 9461299 intron Camta + chr2R 9461363 intron Camta + chr2R_5_9460001 chr2R_9460001 RAL-374 545 chr2R 9479557 9479602 chr2R 9479656 9479702 7 98 4.5 4.5 4.5 1.3 145 chr2R 9479557 intergenic not near genes chr2R 9479630 intergenic not near genes chr2R 9479702 intergenic not near genes chr2R_7_9475001 chr2R_9475001 RAL-374 546 chr2R 9480073 9480097 chr2R 9490624 9490648 roo 4 10551 2.5 0.5 1.5 1.6 10575 chr2R 9480073 intergenic not near genes chr2R 9485360 intergenic not near genes chr2R 9490648 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-374 547 chr2R 9510652 9510682 chr2R 9510788 9510816 4 135 4.0 0.5 2.2 1.2 164 chr2R 9510652 exon brp + chr2R 9510734 intron brp + chr2R 9510816 intron brp + chr2R_4_9510001 chr2R_9510001 RAL-374 548 chr2R 9550445 9550466 chr2R 9550552 9550569 4 102 4.0 2.5 3.2 1.0 124 chr2R 9550445 intergenic not near genes chr2R 9550507 intergenic not near genes chr2R 9550569 intergenic not near genes chr2R_4_9550001 chr2R_9550001 RAL-374 549 chr2R 9550471 9550494 chr2R 9550545 9550574 8 98 1.0 2.0 1.5 3.2 103 chr2R 9550471 intergenic not near genes chr2R 9550522 intergenic not near genes chr2R 9550574 intergenic not near genes chr2R_8_9550001 chr2R_9550001 RAL-374 550 chr2R 9636041 9636084 chr2R 9636562 9636613 7 518 3.5 2.5 3.0 1.8 572 chr2R 9636041 intron Mmp2 - chr2R 9636327 intron Mmp2 - chr2R 9636613 intron Mmp2 - chr2R_7_9635001 chr2R_9635001 RAL-374 551 chr2R 9726594 9726631 chr2R 9734165 9734202 17.6 6 7571 2.0 1.5 1.8 2.1 7608 chr2R 9726594 intron sqa - chr2R 9730398 intron sqa - chr2R 9734202 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-374 552 chr2R 9871031 9871070 chr2R 9871528 9871575 roo 4 504 0.0 2.5 1.2 1.8 544 chr2R 9871031 intron cbx - chr2R 9871303 intron cbx - chr2R 9871575 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-374 553 chr2R 9896804 9896843 chr2R 9896949 9896991 9 146 2.0 3.5 2.8 2.4 187 chr2R 9896804 exon CG30007 + chr2R 9896898 exon CG30007 + chr2R 9896991 exon CG30007 + chr2R_9_9895001 chr2R_9895001 RAL-374 554 chr2R 9945419 9945468 chr2R 9945634 9945680 BS 6 215 2.5 2.5 2.5 1.7 261 chr2R 9945419 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945680 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-374 555 chr2R 9966497 9966508 chr2R 9966722 9966723 4 222 6.5 4.5 5.5 0.6 226 chr2R 9966497 intergenic not near genes chr2R 9966610 intergenic not near genes chr2R 9966723 intergenic not near genes chr2R_4_9965001 chr2R_9965001 RAL-374 556 chr2R 9966511 9966539 chr2R 9966720 9966764 7 222 2.5 4.5 3.5 1.6 253 chr2R 9966511 intergenic not near genes chr2R 9966638 intergenic not near genes chr2R 9966764 intergenic CG12133 + chr2R_7_9965001 chr2R_9965001 RAL-374 557 chr2R 9998083 9998091 chr2R 9998197 9998205 4 114 1.0 4.5 2.8 1.1 122 chr2R 9998083 intron Pka-R2 - chr2R 9998144 intron Pka-R2 - chr2R 9998205 intron Pka-R2 - chr2R_4_9995001 chr2R_9995001 RAL-374 558 chr2R 10005543 10005573 chr2R 10005660 10005690 8 117 4.0 3.0 3.5 1.8 147 chr2R 10005543 intron Pka-R2 - chr2R 10005616 intron Pka-R2 - chr2R 10005690 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-374 559 chr2R 10005846 10005876 chr2R 10007031 10007038 1360 5 1170 5.0 3.0 4.0 1.0 1192 chr2R 10005846 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007038 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-374 560 chr2R 10171095 10171142 chr2R 10171199 10171245 9 102 0.5 2.5 1.5 3.6 150 chr2R 10171095 intron KCNQ - chr2R 10171170 intron KCNQ - chr2R 10171245 intron KCNQ - chr2R_9_10170001 chr2R_10170001 RAL-374 561 chr2R 10189198 10189235 chr2R 10189296 10189333 12 98 1.5 1.5 1.5 4.8 135 chr2R 10189198 intron KCNQ - chr2R 10189266 intron KCNQ - chr2R 10189333 intron KCNQ - chr2R_12_10185001 chr2R_10185001 RAL-374 562 chr2R 10216198 10216209 chr2R 10216287 10216306 4 92 3.5 3.5 3.5 0.9 108 chr2R 10216198 intron,intron CG12912 -,Hr46 - chr2R 10216252 intron,intron CG12912 -,Hr46 - chr2R 10216306 intron,intron CG12912 -,Hr46 - chr2R_4_10215001 chr2R_10215001 RAL-374 563 chr2R 10225711 10225752 chr2R 10225813 10225854 8 101 2.0 1.0 1.5 3.2 143 chr2R 10225711 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225854 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-374 564 chr2R 10257149 10257185 chr2R 10257260 10257296 6 111 2.0 0.0 1.0 3.0 147 chr2R 10257149 intron CG12911 + chr2R 10257222 intron CG12911 + chr2R 10257296 intron CG12911 + chr2R_6_10255001 chr2R_10255001 RAL-374 565 chr2R 10313303 10313351 chr2R 10313411 10313459 10 108 0.0 2.5 1.2 4.5 156 chr2R 10313303 intergenic not near genes chr2R 10313381 intergenic not near genes chr2R 10313459 intergenic Ndg + chr2R_10_10310001 chr2R_10310001 RAL-374 566 chr2R 10352672 10352705 chr2R 10352758 10352768 11 90 3.5 4.0 3.8 2.3 96 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352768 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_11_10350001 chr2R_10350001 RAL-374 567 chr2R 10371526 10371548 chr2R 10375607 10375629 5 4082 15.0 26.0 20.5 0.2 4103 chr2R 10371526 intron CG42732 - chr2R 10373578 intron CG42732 - chr2R 10375629 intron CG42732 - chr2R_5_10370001 chr2R_10370001 RAL-374 568 chr2R 10409041 10409078 chr2R 10409137 10409174 7 96 0.5 2.0 1.2 3.2 133 chr2R 10409041 intron CG42732 - chr2R 10409108 intron CG42732 - chr2R 10409174 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-374 569 chr2R 10411789 10411836 chr2R 10411891 10411938 5 102 3.0 4.0 3.5 1.1 149 chr2R 10411789 intron CG42732 - chr2R 10411864 intron CG42732 - chr2R 10411938 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-374 570 chr2R 10417427 10417442 chr2R 10417533 10417546 4 104 14.5 9.5 12.0 0.3 119 chr2R 10417427 intergenic CG42732 - chr2R 10417486 intergenic CG42732 - chr2R 10417546 intergenic not near genes chr2R_4_10415001 chr2R_10415001 RAL-374 571 chr2R 10551041 10551174 chr2R 10551152 10551313 7 118 0.0 0.0 0.0 7.0 272 chr2R 10551041 intergenic not near genes chr2R 10551177 intergenic not near genes chr2R 10551313 intergenic not near genes chr2R_7_10550001 chr2R_10550001 RAL-374 572 chr2R 10563247 10563545 chr2R 10563365 10563645 4 109 3.5 6.5 5.0 0.7 398 chr2R 10563247 intron psq + chr2R 10563446 intron psq + chr2R 10563645 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-374 573 chr2R 10563550 10563578 chr2R 10563633 10563678 5 96 3.0 3.5 3.2 1.2 128 chr2R 10563550 intron psq + chr2R 10563614 intron psq + chr2R 10563678 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-374 574 chr2R 10563906 10563914 chr2R 10564117 10564125 4 211 0.0 2.5 1.2 1.8 219 chr2R 10563906 intron psq + chr2R 10564016 intron psq + chr2R 10564125 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-374 575 chr2R 10622331 10622361 chr2R 10637116 10637146 mdg1 5 14785 0.5 2.0 1.2 2.3 14815 chr2R 10622331 intron CG11883 + chr2R 10629738 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_5_10625001 chr2R_10625001 RAL-374 576 chr2R 10644048 10644070 chr2R 10644146 10644166 7 98 0.5 0.0 0.2 5.8 118 chr2R 10644048 intron Git - chr2R 10644107 intron Git - chr2R 10644166 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-374 577 chr2R 10658033 10658071 chr2R 10658145 10658183 8 111 4.0 2.0 3.0 2.0 150 chr2R 10658033 intergenic CR44452 - chr2R 10658108 intergenic not near genes chr2R 10658183 intergenic not near genes chr2R_8_10655001 chr2R_10655001 RAL-374 578 chr2R 10761535 10761590 chr2R 10761709 10761763 12 173 2.5 1.5 2.0 4.0 228 chr2R 10761535 intron,5` UTR CG33144 -,CR43605 + chr2R 10761649 intron,5` UTR CG33144 -,CR43605 + chr2R 10761763 intron CG33144 - chr2R_12_10760001 chr2R_10760001 RAL-374 579 chr2R 10827318 10827361 chr2R 10827425 10827468 11 103 0.0 4.5 2.2 3.4 150 chr2R 10827318 exon CG12325 + chr2R 10827393 3` UTR CG12325 + chr2R 10827468 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-374 580 chr2R 10947072 10947081 chr2R 10947179 10947188 5 107 4.5 0.0 2.2 1.6 116 chr2R 10947072 5` UTR CR45228 + chr2R 10947130 intergenic CR45228 + chr2R 10947188 intergenic CR45228 + chr2R_5_10945001 chr2R_10945001 RAL-374 581 chr2R 10948045 10948060 chr2R 10955580 10955606 17.6 4 7548 0.5 1.0 0.8 2.2 7561 chr2R 10948045 intergenic not near genes chr2R 10951826 intergenic not near genes chr2R 10955606 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-374 582 chr2R 11009798 11009839 chr2R 11018992 11019033 roo 7 9191 1.5 3.0 2.2 2.2 9235 chr2R 11009798 intron luna - chr2R 11014416 intron luna - chr2R 11019033 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-374 583 chr2R 11058764 11058806 chr2R 11058863 11058904 7 98 2.5 5.5 4.0 1.4 140 chr2R 11058764 intron luna - chr2R 11058834 intron luna - chr2R 11058904 intron luna - chr2R_7_11055001 chr2R_11055001 RAL-374 584 chr2R 11129801 11129848 chr2R 11129901 11129907 5 92 1.0 1.5 1.2 2.3 106 chr2R 11129801 intergenic not near genes chr2R 11129854 intergenic not near genes chr2R 11129907 intergenic not near genes chr2R_5_11125001 chr2R_11125001 RAL-374 585 chr2R 11134091 11134139 chr2R 11134352 11134400 pogo 7 261 2.5 1.5 2.0 2.3 309 chr2R 11134091 intergenic not near genes chr2R 11134246 intergenic not near genes chr2R 11134400 intergenic not near genes chr2R_7_11130001 chr2R_11130001 RAL-374 586 chr2R 11152602 11152629 chr2R 11152708 11152732 9 105 4.5 1.0 2.8 2.4 130 chr2R 11152602 intron CG13229 - chr2R 11152667 intron CG13229 - chr2R 11152732 intron CG13229 - chr2R_9_11150001 chr2R_11150001 RAL-374 587 chr2R 11184673 11184686 chr2R 11184767 11184783 6 96 8.0 5.5 6.8 0.8 110 chr2R 11184673 intron shn + chr2R 11184728 intron shn + chr2R 11184783 intron shn + chr2R_6_11180001 chr2R_11180001 RAL-374 588 chr2R 11207798 11207834 chr2R 11208011 11208045 BS 6 211 2.0 5.5 3.8 1.2 247 chr2R 11207798 intron shn + chr2R 11207922 intron shn + chr2R 11208045 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-374 589 chr2R 11218901 11218937 chr2R 11219052 11219077 13 147 1.5 1.0 1.2 5.9 176 chr2R 11218901 intron CG9084 - chr2R 11218989 intron CG9084 - chr2R 11219077 intron CG9084 - chr2R_13_11215001 chr2R_11215001 RAL-374 590 chr2R 11276790 11276819 chr2R 11276978 11276991 5 184 1.5 2.5 2.0 1.7 201 chr2R 11276790 intergenic not near genes chr2R 11276890 intergenic not near genes chr2R 11276991 intergenic not near genes chr2R_5_11275001 chr2R_11275001 RAL-374 591 chr2R 11374369 11374411 chr2R 11374457 11374510 14 95 1.5 4.0 2.8 3.7 141 chr2R 11374369 exon CG13203 + chr2R 11374440 intron CG13203 + chr2R 11374510 intron CG13203 + chr2R_14_11370001 chr2R_11370001 RAL-374 592 chr2R 11377243 11377293 chr2R 11377340 11377392 4 98 1.0 0.0 0.5 2.7 149 chr2R 11377243 3` UTR Tsp47F - chr2R 11377318 3` UTR Tsp47F - chr2R 11377392 3` UTR Tsp47F - chr2R_4_11375001 chr2R_11375001 RAL-374 593 chr2R 11415521 11415537 chr2R 11418690 11418702 opus 5 3167 0.5 7.5 4.0 1.0 3181 chr2R 11415521 intron Drip - chr2R 11417112 intron Drip - chr2R 11418702 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-374 594 chr2R 11439202 11439217 chr2R 11439267 11439313 5 84 2.0 4.0 3.0 1.2 111 chr2R 11439202 intron CG7777 + chr2R 11439258 intron CG7777 + chr2R 11439313 intron CG7777 + chr2R_5_11435001 chr2R_11435001 RAL-374 595 chr2R 11472630 11472677 chr2R 11473845 11473879 pogo 14 1214 5.0 7.0 6.0 2.0 1249 chr2R 11472630 intergenic not near genes chr2R 11473254 intergenic not near genes chr2R 11473879 intergenic not near genes chr2R_14_11470001 chr2R_11470001 RAL-374 596 chr2R 11561431 11561456 chr2R 11561517 11561532 5 89 1.0 2.5 1.8 1.8 101 chr2R 11561431 intergenic not near genes chr2R 11561482 intergenic not near genes chr2R 11561532 intergenic not near genes chr2R_5_11560001 chr2R_11560001 RAL-374 597 chr2R 11614603 11614784 chr2R 11614710 11614892 6 107 3.5 3.0 3.2 1.4 289 chr2R 11614603 intron tou - chr2R 11614748 intron tou - chr2R 11614892 intron tou - chr2R_6_11610001 chr2R_11610001 RAL-374 598 chr2R 11677856 11677882 chr2R 11677953 11677976 4 96 3.0 2.0 2.5 1.1 120 chr2R 11677856 intron,exon Roc2 -,Tret1-2 + chr2R 11677916 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677976 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-374 599 chr2R 11863866 11863884 chr2R 11863973 11863991 6 107 1.5 2.5 2.0 2.0 125 chr2R 11863866 intergenic CG42531 + chr2R 11863928 intergenic CG42531 + chr2R 11863991 intergenic CG42531 + chr2R_6_11860001 chr2R_11860001 RAL-374 600 chr2R 11945871 11945911 chr2R 11945968 11946008 8 96 5.5 1.0 3.2 1.9 137 chr2R 11945871 intron CG13188 + chr2R 11945940 intron CG13188 + chr2R 11946008 intron CG13188 + chr2R_8_11945001 chr2R_11945001 RAL-374 601 chr2R 12095650 12095695 chr2R 12095747 12095792 9 90 1.5 1.5 1.5 3.6 142 chr2R 12095650 intron jeb - chr2R 12095721 intron jeb - chr2R 12095792 intron jeb - chr2R_9_12095001 chr2R_12095001 RAL-374 602 chr2R 12124811 12124839 chr2R 12124915 12124943 6 104 5.5 0.5 3.0 1.5 132 chr2R 12124811 intergenic not near genes chr2R 12124877 intergenic not near genes chr2R 12124943 intergenic not near genes chr2R_6_12120001 chr2R_12120001 RAL-374 603 chr2R 12185992 12186019 chr2R 12186102 12186134 9 114 3.0 4.5 3.8 1.9 142 chr2R 12185992 intron Cyp6g1 + chr2R 12186063 intron Cyp6g1 + chr2R 12186134 intron Cyp6g1 + chr2R_9_12185001 chr2R_12185001 RAL-374 604 chr2R 12187475 12187488 chr2R 12190071 12190123 22 2606 37.0 46.0 41.5 0.5 2648 chr2R 12187475 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_22_12185001 chr2R_12185001 RAL-374 605 chr2R 12217577 12217603 chr2R 12217659 12217704 4 96 2.5 6.0 4.2 0.8 127 chr2R 12217577 intergenic not near genes chr2R 12217640 intergenic not near genes chr2R 12217704 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-374 606 chr2R 12334867 12334890 chr2R 12334965 12334977 5 94 1.0 1.0 1.0 2.5 110 chr2R 12334867 intergenic CG8490 + chr2R 12334922 intergenic CG8490 + chr2R 12334977 intergenic CG8490 + chr2R_5_12330001 chr2R_12330001 RAL-374 607 chr2R 12363371 12363407 chr2R 12363823 12363859 13 452 4.0 0.5 2.2 4.1 488 chr2R 12363371 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363859 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-374 608 chr2R 12385342 12385374 chr2R 12385441 12385475 9 99 0.5 7.5 4.0 1.8 133 chr2R 12385342 intergenic not near genes chr2R 12385408 intergenic not near genes chr2R 12385475 intergenic not near genes chr2R_9_12385001 chr2R_12385001 RAL-374 609 chr2R 12535833 12535872 chr2R 12535931 12535973 8 95 0.5 3.0 1.8 2.9 140 chr2R 12535833 intron fra + chr2R 12535903 intron fra + chr2R 12535973 intron fra + chr2R_8_12535001 chr2R_12535001 RAL-374 610 chr2R 12565545 12565595 chr2R 12565943 12565964 5 386 0.0 1.5 0.8 2.8 419 chr2R 12565545 intergenic not near genes chr2R 12565754 intergenic Cyp301a1 + chr2R 12565964 intergenic Cyp301a1 + chr2R_5_12565001 chr2R_12565001 RAL-374 611 chr2R 12593113 12593162 chr2R 12593215 12593263 4 100 0.0 1.0 0.5 2.7 150 chr2R 12593113 intergenic CR45279 -,Sin3A -,Amph + chr2R 12593188 intergenic CR45279 -,Sin3A -,Amph + chr2R 12593263 3` UTR CR45279 - chr2R_4_12590001 chr2R_12590001 RAL-374 612 chr2R 12643771 12643818 chr2R 12643865 12643890 9 93 2.0 1.0 1.5 3.6 119 chr2R 12643771 intron CG8785 - chr2R 12643830 intron CG8785 - chr2R 12643890 exon CG8785 - chr2R_9_12640001 chr2R_12640001 RAL-374 613 chr2R 12695222 12695259 chr2R 12695327 12695334 6 93 3.0 0.5 1.8 2.1 112 chr2R 12695222 intergenic not near genes chr2R 12695278 intergenic not near genes chr2R 12695334 intergenic not near genes chr2R_6_12695001 chr2R_12695001 RAL-374 614 chr2R 12748790 12748796 chr2R 12748892 12748904 4 106 0.5 2.5 1.5 1.6 114 chr2R 12748790 intron CG42663 + chr2R 12748847 intron CG42663 + chr2R 12748904 intron CG42663 + chr2R_4_12745001 chr2R_12745001 RAL-374 615 chr2R 12819433 12819476 chr2R 12824522 12824565 jockey 6 5088 1.5 1.5 1.5 2.4 5132 chr2R 12819433 intergenic not near genes chr2R 12821999 intergenic not near genes chr2R 12824565 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-374 616 chr2R 12844689 12844727 chr2R 12844800 12844837 10 110 3.0 2.0 2.5 2.9 148 chr2R 12844689 3` UTR Or49b + chr2R 12844763 intergenic Or49b + chr2R 12844837 intergenic Or49b + chr2R_10_12840001 chr2R_12840001 RAL-374 617 chr2R 12897459 12897483 chr2R 12897568 12897594 5 111 2.0 2.5 2.2 1.6 135 chr2R 12897459 intron vg + chr2R 12897526 intron vg + chr2R 12897594 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-374 618 chr2R 13048100 13048112 chr2R 13048172 13048194 6 90 1.5 3.0 2.2 1.9 94 chr2R 13048100 intergenic not near genes chr2R 13048147 intergenic not near genes chr2R 13048194 intergenic not near genes chr2R_6_13045001 chr2R_13045001 RAL-374 619 chr2R 13136823 13136864 chr2R 13141639 13141682 Doc 10 4816 2.0 2.5 2.2 3.1 4859 chr2R 13136823 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141682 intron Cap-G + chr2R_10_13135001 chr2R_13135001 RAL-374 620 chr2R 13268073 13268126 chr2R 13268185 13268238 11 111 1.0 2.5 1.8 3.9 165 chr2R 13268073 3` UTR Dh31-R - chr2R 13268156 3` UTR Dh31-R - chr2R 13268238 3` UTR Dh31-R - chr2R_11_13265001 chr2R_13265001 RAL-374 621 chr2R 13302563 13302602 chr2R 13302660 13302698 10 96 2.0 0.0 1.0 5.0 135 chr2R 13302563 intergenic not near genes chr2R 13302630 intergenic not near genes chr2R 13302698 intergenic not near genes chr2R_10_13300001 chr2R_13300001 RAL-374 622 chr2R 13369630 13369761 chr2R 13369748 13369857 7 99 0.0 0.0 0.0 7.0 227 chr2R 13369630 intergenic not near genes chr2R 13369744 intergenic not near genes chr2R 13369857 intergenic not near genes chr2R_7_13365001 chr2R_13365001 RAL-374 623 chr2R 13431470 13431515 chr2R 13431569 13431613 7 98 3.5 3.5 3.5 1.6 143 chr2R 13431470 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431613 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-374 624 chr2R 13432915 13432965 chr2R 13433011 13433058 10 94 1.0 4.0 2.5 2.9 143 chr2R 13432915 intron CG42321 - chr2R 13432986 intron CG42321 - chr2R 13433058 intron,5` UTR CG42321 -,CG30065 + chr2R_10_13430001 chr2R_13430001 RAL-374 625 chr2R 13439090 13439139 chr2R 13439225 13439273 12 132 2.0 2.5 2.2 3.8 183 chr2R 13439090 intergenic CG42321 -,cnn - chr2R 13439182 intergenic CG42321 -,cnn - chr2R 13439273 intergenic cnn -,CG42321 - chr2R_12_13435001 chr2R_13435001 RAL-374 626 chr2R 13532499 13532538 chr2R 13532635 13532674 9 136 2.5 0.5 1.5 3.6 175 chr2R 13532499 intron Vmat - chr2R 13532586 intron Vmat - chr2R 13532674 intron Vmat - chr2R_9_13530001 chr2R_13530001 RAL-374 627 chr2R 13544545 13544584 chr2R 13544641 13544680 5 96 0.0 2.0 1.0 2.5 135 chr2R 13544545 intron CG6145 - chr2R 13544612 intron CG6145 - chr2R 13544680 intron CG6145 - chr2R_5_13540001 chr2R_13540001 RAL-374 628 chr2R 13547064 13547109 chr2R 13547278 13547323 8 215 2.0 1.0 1.5 3.2 259 chr2R 13547064 intron CG6145 - chr2R 13547194 intron CG6145 - chr2R 13547323 intron CG6145 - chr2R_8_13545001 chr2R_13545001 RAL-374 629 chr2R 13554753 13554771 chr2R 13554858 13554876 5 105 0.0 4.0 2.0 1.7 123 chr2R 13554753 intron Roe1 + chr2R 13554814 intron Roe1 + chr2R 13554876 intron Roe1 + chr2R_5_13550001 chr2R_13550001 RAL-374 630 chr2R 13566237 13566276 chr2R 13566337 13566356 4 95 5.5 0.0 2.8 1.1 119 chr2R 13566237 intergenic not near genes chr2R 13566296 intergenic not near genes chr2R 13566356 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-374 631 chr2R 13573773 13573818 chr2R 13573963 13573988 5 184 3.0 2.5 2.8 1.3 215 chr2R 13573773 3` UTR CG42808 - chr2R 13573880 exon CG42808 - chr2R 13573988 exon CG42808 - chr2R_5_13570001 chr2R_13570001 RAL-374 632 chr2R 13580506 13580527 chr2R 13580876 13580896 jockey 4 370 1.5 5.0 3.2 1.0 390 chr2R 13580506 3` UTR CG6191 - chr2R 13580701 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580896 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-374 633 chr2R 13599985 13600003 chr2R 13600105 13600124 4 120 4.0 0.0 2.0 1.3 139 chr2R 13599985 intergenic not near genes chr2R 13600054 intergenic not near genes chr2R 13600124 intergenic not near genes chr2R_4_13600001 chr2R_13600001 RAL-374 634 chr2R 13721219 13721229 chr2R 13721306 13721326 5 92 3.0 2.5 2.8 1.3 107 chr2R 13721219 intron fas + chr2R 13721272 intron fas + chr2R 13721326 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-374 635 chr2R 13727835 13727845 chr2R 13727939 13727950 5 104 3.0 4.5 3.8 1.0 115 chr2R 13727835 intron fas + chr2R 13727892 intron fas + chr2R 13727950 intron fas + chr2R_5_13725001 chr2R_13725001 RAL-374 636 chr2R 13728117 13728158 chr2R 13735794 13735834 opus 6 7677 3.0 2.5 2.8 1.6 7717 chr2R 13728117 intron fas + chr2R 13731976 intron fas + chr2R 13735834 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-374 637 chr2R 13768994 13769010 chr2R 13769077 13769129 9 104 1.0 2.0 1.5 3.6 135 chr2R 13768994 intergenic not near genes chr2R 13769062 intergenic not near genes chr2R 13769129 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-374 638 chr2R 13770515 13770519 chr2R 13770625 13770629 4 110 0.0 4.0 2.0 1.3 114 chr2R 13770515 intron Cpr50Ca + chr2R 13770572 intron Cpr50Ca + chr2R 13770629 intron Cpr50Ca + chr2R_4_13770001 chr2R_13770001 RAL-374 639 chr2R 13905588 13905626 chr2R 13907590 13907609 Rt1a 5 1994 4.0 3.5 3.8 1.0 2021 chr2R 13905588 intron shot - chr2R 13906598 intron shot - chr2R 13907609 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-374 640 chr2R 14054556 14054604 chr2R 14054664 14054706 19 105 1.0 4.0 2.5 5.4 150 chr2R 14054556 intron mam + chr2R 14054631 intron mam + chr2R 14054706 intron mam + chr2R_19_14050001 chr2R_14050001 RAL-374 641 chr2R 14142424 14142471 chr2R 14142534 14142581 9 108 1.5 1.5 1.5 3.6 157 chr2R 14142424 intergenic not near genes chr2R 14142502 intergenic not near genes chr2R 14142581 intergenic not near genes chr2R_9_14140001 chr2R_14140001 RAL-374 642 chr2R 14266748 14266794 chr2R 14266842 14266890 9 96 3.5 4.0 3.8 1.9 142 chr2R 14266748 intron CG8547 - chr2R 14266819 intron CG8547 - chr2R 14266890 intron CG8547 - chr2R_9_14265001 chr2R_14265001 RAL-374 643 chr2R 14290278 14290322 chr2R 14290389 14290411 8 100 2.5 1.5 2.0 2.7 133 chr2R 14290278 intron Ih + chr2R 14290344 intron Ih + chr2R 14290411 intron Ih + chr2R_8_14290001 chr2R_14290001 RAL-374 644 chr2R 14467291 14467326 chr2R 14476467 14476489 roo 11 9176 1.0 2.0 1.5 4.4 9198 chr2R 14467291 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476489 5` UTR CR44462 + chr2R_11_14470001 chr2R_14470001 RAL-374 645 chr2R 14497375 14497417 chr2R 14498557 14498602 1360 6 1183 0.0 2.0 1.0 3.0 1227 chr2R 14497375 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498602 3` UTR Cpsf160 - chr2R_6_14495001 chr2R_14495001 RAL-374 646 chr2R 14524832 14524847 chr2R 14524947 14524964 4 114 6.0 0.0 3.0 1.0 132 chr2R 14524832 intergenic not near genes chr2R 14524898 intergenic not near genes chr2R 14524964 intergenic not near genes chr2R_4_14520001 chr2R_14520001 RAL-374 647 chr2R 14530355 14530369 chr2R 14530452 14530478 7 107 6.5 2.5 4.5 1.3 123 chr2R 14530355 intron ttv + chr2R 14530416 intron ttv + chr2R 14530478 intron ttv + chr2R_7_14530001 chr2R_14530001 RAL-374 648 chr2R 14538945 14538988 chr2R 14539040 14539044 6 82 7.0 6.5 6.8 0.8 99 chr2R 14538945 intron ttv + chr2R 14538994 intron ttv + chr2R 14539044 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-374 649 chr2R 14610239 14610269 chr2R 14610342 14610381 11 109 3.5 4.0 3.8 2.3 142 chr2R 14610239 exon Su(var)2-HP2 - chr2R 14610310 exon Su(var)2-HP2 - chr2R 14610381 exon Su(var)2-HP2 - chr2R_11_14610001 chr2R_14610001 RAL-374 650 chr2R 14796331 14796361 chr2R 14796448 14796478 5 117 1.0 1.0 1.0 2.5 147 chr2R 14796331 intron kn - chr2R 14796404 intron kn - chr2R 14796478 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-374 651 chr2R 14799865 14799887 chr2R 14799961 14799983 5 96 1.5 5.5 3.5 1.1 118 chr2R 14799865 intron kn - chr2R 14799924 intron kn - chr2R 14799983 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-374 652 chr2R 14873684 14873716 chr2R 14875221 14875254 5 1537 2.0 0.0 1.0 2.5 1570 chr2R 14873684 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874469 exon Cyp6a17 + chr2R 14875254 exon Cyp6a17 + chr2R_5_14870001 chr2R_14870001 RAL-374 653 chr2R 14875227 14875266 chr2R 14875659 14875698 12 432 0.0 3.0 1.5 4.8 471 chr2R 14875227 exon Cyp6a17 + chr2R 14875462 exon Cyp6a17 + chr2R 14875698 3` UTR Cyp6a17 + chr2R_12_14875001 chr2R_14875001 RAL-374 654 chr2R 14889194 14889221 chr2R 14897822 14897844 Max-element 6 8627 4.0 0.5 2.2 1.9 8650 chr2R 14889194 intergenic Cyp6a8 - chr2R 14893519 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-374 655 chr2R 14911683 14911708 chr2R 14911825 14911851 4 142 3.0 3.0 3.0 1.0 168 chr2R 14911683 intron CG10249 - chr2R 14911767 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-374 656 chr2R 14922129 14922154 chr2R 14922225 14922250 13 95 6.0 2.5 4.2 2.5 121 chr2R 14922129 intron CG10249 - chr2R 14922190 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_13_14920001 chr2R_14920001 RAL-374 657 chr2R 14930835 14930854 chr2R 14930948 14930966 5 112 0.0 0.0 0.0 5.0 131 chr2R 14930835 intron CG10253 - chr2R 14930900 intron CG10253 - chr2R 14930966 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-374 658 chr2R 15004708 15004750 chr2R 15005057 15005096 jockey 5 348 6.0 5.5 5.8 0.7 388 chr2R 15004708 intergenic not near genes chr2R 15004902 intergenic not near genes chr2R 15005096 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-374 659 chr2R 15015460 15015486 chr2R 15022888 15022930 mdg1 8 7440 2.5 4.0 3.2 1.9 7470 chr2R 15015460 intron hbs + chr2R 15019195 intron hbs + chr2R 15022930 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-374 660 chr2R 15051065 15051097 chr2R 15051167 15051199 8 101 5.5 2.5 4.0 1.6 134 chr2R 15051065 intergenic not near genes chr2R 15051132 intergenic not near genes chr2R 15051199 intergenic not near genes chr2R_8_15050001 chr2R_15050001 RAL-374 661 chr2R 15073102 15073120 chr2R 15073205 15073222 6 102 2.0 3.0 2.5 1.7 120 chr2R 15073102 intergenic not near genes chr2R 15073162 intergenic not near genes chr2R 15073222 intergenic not near genes chr2R_6_15070001 chr2R_15070001 RAL-374 662 chr2R 15084961 15085003 chr2R 15092030 15092072 297 5 7067 2.5 5.5 4.0 1.0 7111 chr2R 15084961 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092072 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-374 663 chr2R 15094877 15094914 chr2R 15094974 15095011 9 97 3.0 6.0 4.5 1.6 134 chr2R 15094877 intergenic not near genes chr2R 15094944 intergenic not near genes chr2R 15095011 intergenic not near genes chr2R_9_15090001 chr2R_15090001 RAL-374 664 chr2R 15119297 15119347 chr2R 15127797 15127847 Tirant 12 8497 6.0 4.5 5.2 1.9 8550 chr2R 15119297 intron chn + chr2R 15123572 intron chn + chr2R 15127847 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-374 665 chr2R 15133464 15133495 chr2R 15133563 15133592 10 98 7.0 3.0 5.0 1.7 128 chr2R 15133464 intron chn + chr2R 15133528 intron chn + chr2R 15133592 intron chn + chr2R_10_15130001 chr2R_15130001 RAL-374 666 chr2R 15137959 15137988 chr2R 15138056 15138090 5 100 4.0 0.0 2.0 1.7 131 chr2R 15137959 intron chn + chr2R 15138024 intron chn + chr2R 15138090 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-374 667 chr2R 15187744 15187783 chr2R 15187842 15187881 6 98 2.0 3.5 2.8 1.6 137 chr2R 15187744 intron igl + chr2R 15187812 intron igl + chr2R 15187881 intron igl + chr2R_6_15185001 chr2R_15185001 RAL-374 668 chr2R 15196071 15196100 chr2R 15196187 15196216 9 114 10.0 2.5 6.2 1.2 145 chr2R 15196071 intergenic not near genes chr2R 15196144 intergenic not near genes chr2R 15196216 intergenic not near genes chr2R_9_15195001 chr2R_15195001 RAL-374 669 chr2R 15235050 15235090 chr2R 15235184 15235224 9 134 2.5 2.5 2.5 2.6 174 chr2R 15235050 intron Fs - chr2R 15235137 intron Fs - chr2R 15235224 intron Fs - chr2R_9_15235001 chr2R_15235001 RAL-374 670 chr2R 15296149 15296170 chr2R 15296252 15296266 8 101 4.0 1.5 2.8 2.1 117 chr2R 15296149 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296266 intron Trpm - chr2R_8_15295001 chr2R_15295001 RAL-374 671 chr2R 15374789 15375062 chr2R 15374892 15375187 4 115 4.5 2.5 3.5 0.9 398 chr2R 15374789 intergenic not near genes chr2R 15374988 intergenic not near genes chr2R 15375187 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-374 672 chr2R 15375351 15375361 chr2R 15376175 15376198 4 832 2.5 5.0 3.8 0.8 847 chr2R 15375351 intergenic not near genes chr2R 15375774 intergenic not near genes chr2R 15376198 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-374 673 chr2R 15462089 15462129 chr2R 15462420 15462435 7 312 18.5 17.5 18.0 0.4 346 chr2R 15462089 intron CG43729 + chr2R 15462262 intron CG43729 + chr2R 15462435 intron CG43729 + chr2R_7_15460001 chr2R_15460001 RAL-374 674 chr2R 15472026 15472066 chr2R 15472121 15472122 6 94 0.0 1.0 0.5 4.0 96 chr2R 15472026 intergenic CG43729 +,CG8180 - chr2R 15472074 intergenic CG8180 -,CG43729 + chr2R 15472122 intergenic CG8180 -,CG43729 + chr2R_6_15470001 chr2R_15470001 RAL-374 675 chr2R 15534661 15534698 chr2R 15534760 15534797 6 99 3.0 1.0 2.0 2.0 136 chr2R 15534661 intron CG30471 + chr2R 15534729 intron CG30471 + chr2R 15534797 intron CG30471 + chr2R_6_15530001 chr2R_15530001 RAL-374 676 chr2R 15685347 15685395 chr2R 15685468 15685518 8 122 3.0 2.5 2.8 2.1 171 chr2R 15685347 intron,exon Ranbp11 +,CG30082 - chr2R 15685432 intron,intron Ranbp11 +,CG30082 - chr2R 15685518 intron,intron Ranbp11 +,CG30082 - chr2R_8_15685001 chr2R_15685001 RAL-374 677 chr2R 15699536 15699589 chr2R 15700056 15700111 11 520 2.0 1.5 1.8 3.9 575 chr2R 15699536 3` UTR,5` UTR CG30080 -,CG42662 - chr2R 15699824 3` UTR,5` UTR CG30080 -,CG42662 - chr2R 15700111 intron,5` UTR CG30080 -,CG42662 - chr2R_11_15695001 chr2R_15695001 RAL-374 678 chr2R 15710427 15710467 chr2R 15710692 15710732 9 264 3.5 3.0 3.2 2.1 305 chr2R 15710427 intergenic not near genes chr2R 15710580 intergenic not near genes chr2R 15710732 intergenic not near genes chr2R_9_15710001 chr2R_15710001 RAL-374 679 chr2R 15891801 15891833 chr2R 15891896 15891928 4 96 1.0 2.5 1.8 1.4 127 chr2R 15891801 intron sli - chr2R 15891864 intron sli - chr2R 15891928 intron sli - chr2R_4_15890001 chr2R_15890001 RAL-374 680 chr2R 15941652 15941688 chr2R 15941749 15941763 11 98 7.5 5.5 6.5 1.5 111 chr2R 15941652 intergenic CG8299 - chr2R 15941708 intergenic CG8299 - chr2R 15941763 intergenic CG8299 - chr2R_11_15940001 chr2R_15940001 RAL-374 681 chr2R 16206629 16206676 chr2R 16206850 16206897 14 217 1.0 5.0 3.0 3.5 268 chr2R 16206629 intron mrj - chr2R 16206763 intron mrj - chr2R 16206897 intron mrj - chr2R_14_16205001 chr2R_16205001 RAL-374 682 chr2R 16211975 16212027 chr2R 16212140 16212192 8 165 3.0 2.0 2.5 2.3 217 chr2R 16211975 intron mrj - chr2R 16212084 intron mrj - chr2R 16212192 intron mrj - chr2R_8_16210001 chr2R_16210001 RAL-374 683 chr2R 16245622 16245658 chr2R 16245727 16245766 6 108 1.0 1.0 1.0 3.0 144 chr2R 16245622 intron CngA - chr2R 16245694 intron CngA - chr2R 16245766 intron CngA - chr2R_6_16245001 chr2R_16245001 RAL-374 684 chr2R 16387976 16388030 chr2R 16388142 16388175 6 160 1.0 1.5 1.2 2.7 199 chr2R 16387976 intron Sema-2b + chr2R 16388076 intron Sema-2b + chr2R 16388175 intron Sema-2b + chr2R_6_16385001 chr2R_16385001 RAL-374 685 chr2R 16518044 16518074 chr2R 16518134 16518169 7 95 1.5 2.0 1.8 2.5 125 chr2R 16518044 intron Sema-2a + chr2R 16518106 intron Sema-2a + chr2R 16518169 intron Sema-2a + chr2R_7_16515001 chr2R_16515001 RAL-374 686 chr2R 16539622 16539655 chr2R 16544851 16544884 copia 7 5229 1.0 1.0 1.0 3.5 5262 chr2R 16539622 intergenic not near genes chr2R 16542253 intergenic not near genes chr2R 16544884 intergenic not near genes chr2R_7_16540001 chr2R_16540001 RAL-374 687 chr2R 16571854 16571899 chr2R 16571969 16572014 6 115 2.0 1.5 1.8 2.1 160 chr2R 16571854 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16572014 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-374 688 chr2R 16586856 16586908 chr2R 16586954 16587006 7 98 1.0 1.5 1.2 3.2 150 chr2R 16586856 intergenic RpLP2 +,CG8311 - chr2R 16586931 intergenic CG8311 -,RpLP2 + chr2R 16587006 intergenic CG8311 -,RpLP2 + chr2R_7_16585001 chr2R_16585001 RAL-374 689 chr2R 16607012 16607049 chr2R 16607666 16607704 6 654 1.0 2.5 1.8 2.1 692 chr2R 16607012 intergenic not near genes chr2R 16607358 intergenic CG5065 + chr2R 16607704 5` UTR CG5065 + chr2R_6_16605001 chr2R_16605001 RAL-374 690 chr2R 16617056 16617071 chr2R 16617155 16617170 4 99 5.5 3.5 4.5 0.7 114 chr2R 16617056 intron CG5065 + chr2R 16617113 intron CG5065 + chr2R 16617170 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-374 691 chr2R 16703753 16703790 chr2R 16703863 16703900 8 108 2.5 2.0 2.2 2.5 147 chr2R 16703753 intron CG30463 - chr2R 16703826 intron CG30463 - chr2R 16703900 intron CG30463 - chr2R_8_16700001 chr2R_16700001 RAL-374 692 chr2R 16708970 16709023 chr2R 16709086 16709139 12 116 2.5 4.0 3.2 2.9 169 chr2R 16708970 intron CG30463 - chr2R 16709054 intron CG30463 - chr2R 16709139 intron CG30463 - chr2R_12_16705001 chr2R_16705001 RAL-374 693 chr2R 16714535 16714569 chr2R 16714634 16714668 5 98 1.0 1.0 1.0 2.5 133 chr2R 16714535 intron CG30463 - chr2R 16714602 intron CG30463 - chr2R 16714668 intron CG30463 - chr2R_5_16710001 chr2R_16710001 RAL-374 694 chr2R 16732612 16732654 chr2R 16732719 16732750 14 106 4.0 5.0 4.5 2.5 138 chr2R 16732612 5` UTR CG30463 - chr2R 16732681 5` UTR CG30463 - chr2R 16732750 5` UTR CG30463 - chr2R_14_16730001 chr2R_16730001 RAL-374 695 chr2R 16775629 16775668 chr2R 16775913 16775949 6 283 1.0 1.5 1.2 2.7 320 chr2R 16775629 3` UTR Arp53D + chr2R 16775789 intergenic Arp53D + chr2R 16775949 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-374 696 chr2R 16787455 16787474 chr2R 16787557 16787576 5 102 6.0 2.5 4.2 1.0 121 chr2R 16787455 intron CG5522 + chr2R 16787516 intron CG5522 + chr2R 16787576 intron CG5522 + chr2R_5_16785001 chr2R_16785001 RAL-374 697 chr2R 16808004 16808053 chr2R 16808128 16808167 14 122 2.0 4.5 3.2 3.3 163 chr2R 16808004 intergenic not near genes chr2R 16808086 intergenic not near genes chr2R 16808167 intergenic not near genes chr2R_14_16805001 chr2R_16805001 RAL-374 698 chr2R 16910215 16910246 chr2R 16910334 16910363 7 118 4.5 3.0 3.8 1.5 148 chr2R 16910215 intergenic not near genes chr2R 16910289 intergenic not near genes chr2R 16910363 intergenic not near genes chr2R_7_16910001 chr2R_16910001 RAL-374 699 chr2R 16918226 16918264 chr2R 16918315 16918352 10 88 1.5 4.0 2.8 2.6 126 chr2R 16918226 intergenic not near genes chr2R 16918289 intergenic not near genes chr2R 16918352 intergenic not near genes chr2R_10_16915001 chr2R_16915001 RAL-374 700 chr2R 16933321 16933362 chr2R 16933440 16933481 12 119 1.0 3.0 2.0 4.0 160 chr2R 16933321 intron Pkc53E + chr2R 16933401 intron Pkc53E + chr2R 16933481 intron Pkc53E + chr2R_12_16930001 chr2R_16930001 RAL-374 701 chr2R 16972428 16972457 chr2R 16972545 16972573 8 117 2.0 3.0 2.5 2.3 145 chr2R 16972428 intergenic not near genes chr2R 16972500 intergenic not near genes chr2R 16972573 intergenic not near genes chr2R_8_16970001 chr2R_16970001 RAL-374 702 chr2R 17079033 17079089 chr2R 17079135 17079188 7 101 1.0 1.5 1.2 3.2 155 chr2R 17079033 intron CG30460 - chr2R 17079110 intron CG30460 - chr2R 17079188 intron CG30460 - chr2R_7_17075001 chr2R_17075001 RAL-374 703 chr2R 17087453 17087459 chr2R 17087551 17087555 6 98 6.5 2.0 4.2 1.2 102 chr2R 17087453 5` UTR CG30460 - chr2R 17087504 5` UTR CG30460 - chr2R 17087555 5` UTR CG30460 - chr2R_6_17085001 chr2R_17085001 RAL-374 704 chr2R 17132845 17132869 chr2R 17132965 17132989 5 120 2.5 0.5 1.5 2.0 144 chr2R 17132845 intergenic not near genes chr2R 17132917 intergenic not near genes chr2R 17132989 intergenic Acp54A1 + chr2R_5_17130001 chr2R_17130001 RAL-374 705 chr2R 17147225 17147263 chr2R 17152275 17152313 jockey 12 5050 3.5 5.5 4.5 2.2 5088 chr2R 17147225 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152313 intergenic not near genes chr2R_12_17145001 chr2R_17145001 RAL-374 706 chr2R 17192380 17192396 chr2R 17192493 17192509 5 113 0.0 3.5 1.8 1.8 129 chr2R 17192380 intergenic not near genes chr2R 17192444 intergenic not near genes chr2R 17192509 intergenic not near genes chr2R_5_17190001 chr2R_17190001 RAL-374 707 chr2R 17227386 17227425 chr2R 17227808 17227824 7 418 3.5 0.5 2.0 2.3 438 chr2R 17227386 intron mbl + chr2R 17227605 intron mbl + chr2R 17227824 intron mbl + chr2R_7_17225001 chr2R_17225001 RAL-374 708 chr2R 17236497 17236536 chr2R 17241721 17241760 copia 11 5223 4.0 4.0 4.0 2.2 5263 chr2R 17236497 intron mbl + chr2R 17239128 intron mbl + chr2R 17241760 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-374 709 chr2R 17269020 17269056 chr2R 17269121 17269168 5 112 2.0 0.0 1.0 2.5 148 chr2R 17269020 intron mbl + chr2R 17269094 intron mbl + chr2R 17269168 intron mbl + chr2R_5_17265001 chr2R_17265001 RAL-374 710 chr2R 17458986 17459027 chr2R 17459091 17459132 7 105 3.0 2.5 2.8 1.8 146 chr2R 17458986 intron CG14478 + chr2R 17459059 intron CG14478 + chr2R 17459132 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-374 711 chr2R 17470304 17470355 chr2R 17470404 17470455 9 99 0.5 0.5 0.5 6.0 151 chr2R 17470304 intron qkr54B + chr2R 17470380 intron qkr54B + chr2R 17470455 intron qkr54B + chr2R_9_17470001 chr2R_17470001 RAL-374 712 chr2R 17485896 17485946 chr2R 17490686 17490734 F-element 5 4789 2.0 1.5 1.8 1.8 4838 chr2R 17485896 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488315 intron NT5E-2 + chr2R 17490734 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-374 713 chr2R 17640099 17640116 chr2R 17640352 17640370 4 254 7.0 4.5 5.8 0.6 271 chr2R 17640099 intergenic not near genes chr2R 17640234 intergenic not near genes chr2R 17640370 intergenic not near genes chr2R_4_17640001 chr2R_17640001 RAL-374 714 chr2R 17709962 17710115 chr2R 17710073 17710213 19 103 0.0 0.0 0.0 19.0 251 chr2R 17709962 intron CG6424 - chr2R 17710088 intron CG6424 - chr2R 17710213 intron CG6424 - chr2R_19_17710001 chr2R_17710001 RAL-374 715 chr2R 17782350 17782393 chr2R 17783573 17783616 pogo 4 1223 1.5 3.0 2.2 1.2 1266 chr2R 17782350 intergenic CG33981 -,fab1 - chr2R 17782983 intergenic not near genes chr2R 17783616 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-374 716 chr2R 17784026 17784033 chr2R 17784285 17784292 pogo 4 258 4.0 3.0 3.5 0.9 266 chr2R 17784026 intergenic mir-31a - chr2R 17784159 intergenic mir-31a - chr2R 17784292 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-374 717 chr2R 17918150 17918183 chr2R 17918245 17918280 9 94 7.5 0.5 4.0 1.8 130 chr2R 17918150 intron Elk + chr2R 17918215 intron Elk + chr2R 17918280 intron Elk + chr2R_9_17915001 chr2R_17915001 RAL-374 718 chr2R 17921443 17921458 chr2R 17921545 17921560 4 101 0.5 6.0 3.2 1.0 117 chr2R 17921443 intron Elk + chr2R 17921502 intron Elk + chr2R 17921560 intron Elk + chr2R_4_17920001 chr2R_17920001 RAL-374 719 chr2R 18044001 18044051 chr2R 18044373 18044384 6 361 3.0 2.0 2.5 1.7 383 chr2R 18044001 intergenic CG5770 -,CG5773 - chr2R 18044192 3` UTR CG5770 - chr2R 18044384 exon CG5770 - chr2R_6_18040001 chr2R_18040001 RAL-374 720 chr2R 18045658 18045671 chr2R 18046030 18046043 jockey 4 372 4.0 1.5 2.8 1.1 385 chr2R 18045658 intergenic not near genes chr2R 18045850 intergenic not near genes chr2R 18046043 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 RAL-374 721 chr2R 18054422 18054463 chr2R 18054534 18054575 12 111 1.5 3.0 2.2 3.8 153 chr2R 18054422 intergenic CG10911 - chr2R 18054498 intergenic CG10911 -,CR45313 + chr2R 18054575 intergenic CR45313 + chr2R_12_18050001 chr2R_18050001 RAL-374 722 chr2R 18124319 18124363 chr2R 18124416 18124460 10 96 3.5 4.5 4.0 2.0 141 chr2R 18124319 intron stau - chr2R 18124390 intron stau - chr2R 18124460 intron stau - chr2R_10_18120001 chr2R_18120001 RAL-374 723 chr2R 18207475 18207494 chr2R 18207586 18207603 7 111 1.0 5.5 3.2 1.7 128 chr2R 18207475 intergenic CG30114 + chr2R 18207539 intergenic CG30114 + chr2R 18207603 intergenic CG30114 + chr2R_7_18205001 chr2R_18205001 RAL-374 724 chr2R 18248603 18248615 chr2R 18248685 18248715 4 90 1.5 0.5 1.0 2.0 112 chr2R 18248603 intergenic not near genes chr2R 18248659 intergenic not near genes chr2R 18248715 intergenic not near genes chr2R_4_18245001 chr2R_18245001 RAL-374 725 chr2R 18248616 18248621 chr2R 18248675 18248685 4 73 1.0 0.0 0.5 2.7 69 chr2R 18248616 intergenic not near genes chr2R 18248650 intergenic not near genes chr2R 18248685 intergenic not near genes chr2R_4_18245001 chr2R_18245001 RAL-374 726 chr2R 18358158 18358165 chr2R 18358262 18358269 4 104 2.0 8.0 5.0 0.7 111 chr2R 18358158 intergenic not near genes chr2R 18358214 intergenic not near genes chr2R 18358269 intergenic not near genes chr2R_4_18355001 chr2R_18355001 RAL-374 727 chr2R 18358376 18358406 chr2R 18372607 18372629 roo 8 14230 3.5 0.0 1.8 2.9 14253 chr2R 18358376 intergenic not near genes chr2R 18365502 intergenic not near genes chr2R 18372629 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-374 728 chr2R 18408283 18408293 chr2R 18408404 18408434 5 137 4.0 3.0 3.5 1.1 151 chr2R 18408283 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408434 exon GstE8 + chr2R_5_18405001 chr2R_18405001 RAL-374 729 chr2R 18480438 18480486 chr2R 18480565 18480613 4 127 0.0 0.0 0.0 4.0 175 chr2R 18480438 intron CG30116 - chr2R 18480526 intron CG30116 - chr2R 18480613 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-374 730 chr2R 18486839 18486877 chr2R 18487115 18487159 9 279 1.5 6.5 4.0 1.8 320 chr2R 18486839 intron CG30116 - chr2R 18486999 intron CG30116 - chr2R 18487159 intron CG30116 - chr2R_9_18485001 chr2R_18485001 RAL-374 731 chr2R 18527767 18527808 chr2R 18527907 18527949 9 135 1.5 4.0 2.8 2.4 182 chr2R 18527767 exon CG10924 + chr2R 18527858 intron CG10924 + chr2R 18527949 intron CG10924 + chr2R_9_18525001 chr2R_18525001 RAL-374 732 chr2R 18528176 18528221 chr2R 18528280 18528319 19 98 2.5 4.5 3.5 4.2 143 chr2R 18528176 intron CG10924 + chr2R 18528248 intron CG10924 + chr2R 18528319 intron CG10924 + chr2R_19_18525001 chr2R_18525001 RAL-374 733 chr2R 18575137 18575157 chr2R 18575374 18575394 6 237 0.5 2.5 1.5 2.4 257 chr2R 18575137 intron GEFmeso - chr2R 18575266 intron GEFmeso - chr2R 18575394 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-374 734 chr2R 18575812 18575830 chr2R 18581988 18582036 3S18 7 6191 0.0 5.0 2.5 2.0 6224 chr2R 18575812 intron GEFmeso - chr2R 18578924 intron GEFmeso - chr2R 18582036 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-374 735 chr2R 18590850 18590880 chr2R 18600019 18600048 roo 4 9170 3.0 1.5 2.2 1.2 9198 chr2R 18590850 intron GEFmeso - chr2R 18595449 intron GEFmeso - chr2R 18600048 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-374 736 chr2R 18605119 18605161 chr2R 18605225 18605272 11 110 4.0 4.0 4.0 2.2 153 chr2R 18605119 intron GEFmeso - chr2R 18605196 intron GEFmeso - chr2R 18605272 intron GEFmeso - chr2R_11_18605001 chr2R_18605001 RAL-374 737 chr2R 18608632 18608647 chr2R 18608709 18608715 5 80 3.0 2.0 2.5 1.4 83 chr2R 18608632 intron GEFmeso - chr2R 18608674 intron GEFmeso - chr2R 18608715 intron GEFmeso - chr2R_5_18605001 chr2R_18605001 RAL-374 738 chr2R 18612761 18612801 chr2R 18612865 18612905 7 104 1.0 1.5 1.2 3.2 144 chr2R 18612761 intergenic CG42697 -,CG10927 + chr2R 18612833 intergenic CG42697 -,CG10927 + chr2R 18612905 intergenic CG42697 -,CG10927 + chr2R_7_18610001 chr2R_18610001 RAL-374 739 chr2R 18692882 18692901 chr2R 18692987 18693002 5 104 3.0 2.0 2.5 1.4 120 chr2R 18692882 intron Sik3 + chr2R 18692942 intron Sik3 + chr2R 18693002 intron Sik3 + chr2R_5_18690001 chr2R_18690001 RAL-374 740 chr2R 18857389 18857405 chr2R 18857485 18857501 4 96 1.5 3.5 2.5 1.1 112 chr2R 18857389 exon Jheh2 - chr2R 18857445 intron Jheh2 - chr2R 18857501 intron Jheh2 - chr2R_4_18855001 chr2R_18855001 RAL-374 741 chr2R 18862311 18862341 chr2R 18862511 18862541 9 199 0.0 2.5 1.2 4.1 230 chr2R 18862311 intergenic Jheh3 - chr2R 18862426 intergenic Jheh3 -,CG43069 + chr2R 18862541 intergenic CG43069 +,Jheh3 - chr2R_9_18860001 chr2R_18860001 RAL-374 742 chr2R 18871718 18871741 chr2R 18871820 18871843 5 101 6.0 2.5 4.2 1.0 125 chr2R 18871718 intergenic not near genes chr2R 18871780 intergenic not near genes chr2R 18871843 intergenic not near genes chr2R_5_18870001 chr2R_18870001 RAL-374 743 chr2R 18883688 18883727 chr2R 18883780 18883821 11 99 2.0 2.5 2.2 3.4 133 chr2R 18883688 intron sano + chr2R 18883754 intron sano + chr2R 18883821 intron sano + chr2R_11_18880001 chr2R_18880001 RAL-374 744 chr2R 18926493 18926529 chr2R 18926600 18926636 7 107 2.0 0.5 1.2 3.2 143 chr2R 18926493 intron sano + chr2R 18926564 intron sano + chr2R 18926636 intron sano + chr2R_7_18925001 chr2R_18925001 RAL-374 745 chr2R 18929098 18929124 chr2R 18929183 18929222 6 96 1.5 1.0 1.2 2.7 124 chr2R 18929098 intron sano + chr2R 18929160 intron sano + chr2R 18929222 intron sano + chr2R_6_18925001 chr2R_18925001 RAL-374 746 chr2R 18938506 18938538 chr2R 18938604 18938637 7 99 2.0 0.5 1.2 3.2 131 chr2R 18938506 intron sano + chr2R 18938572 intron sano + chr2R 18938637 intron sano + chr2R_7_18935001 chr2R_18935001 RAL-374 747 chr2R 18964897 18964936 chr2R 18964993 18965032 6 96 3.0 2.0 2.5 1.7 135 chr2R 18964897 intergenic not near genes chr2R 18964964 intergenic not near genes chr2R 18965032 intergenic not near genes chr2R_6_18960001 chr2R_18960001 RAL-374 748 chr2R 19026030 19026057 chr2R 19026189 19026217 6 160 6.0 1.0 3.5 1.3 187 chr2R 19026030 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026217 intron 5-HT1B - chr2R_6_19025001 chr2R_19025001 RAL-374 749 chr2R 19026941 19026969 chr2R 19027039 19027068 6 99 4.0 0.0 2.0 2.0 127 chr2R 19026941 intron 5-HT1B - chr2R 19027004 intron 5-HT1B - chr2R 19027068 intron 5-HT1B - chr2R_6_19025001 chr2R_19025001 RAL-374 750 chr2R 19187536 19187588 chr2R 19187695 19187745 6 151 4.0 2.0 3.0 1.5 209 chr2R 19187536 intron hppy + chr2R 19187640 intron hppy + chr2R 19187745 intron hppy + chr2R_6_19185001 chr2R_19185001 RAL-374 751 chr2R 19211090 19211120 chr2R 19211244 19211270 5 153 0.0 1.5 0.8 2.8 180 chr2R 19211090 intron hppy + chr2R 19211180 intron hppy + chr2R 19211270 intron hppy + chr2R_5_19210001 chr2R_19210001 RAL-374 752 chr2R 19373666 19373712 chr2R 19373865 19373904 15 197 2.0 5.0 3.5 3.3 238 chr2R 19373666 5` UTR CG9416 - chr2R 19373785 intergenic CG9416 - chr2R 19373904 intergenic CG9416 - chr2R_15_19370001 chr2R_19370001 RAL-374 753 chr2R 19376138 19376144 chr2R 19376334 19376356 4 208 0.0 3.0 1.5 1.6 218 chr2R 19376138 intron CG10062 + chr2R 19376247 intron CG10062 + chr2R 19376356 intron CG10062 + chr2R_4_19375001 chr2R_19375001 RAL-374 754 chr2R 19537396 19537446 chr2R 19537508 19537529 13 106 3.0 3.0 3.0 3.2 133 chr2R 19537396 intron sm - chr2R 19537462 intron sm - chr2R 19537529 intron sm - chr2R_13_19535001 chr2R_19535001 RAL-374 755 chr2R 19546203 19546229 chr2R 19546299 19546326 7 97 2.0 1.5 1.8 2.5 123 chr2R 19546203 intron sm - chr2R 19546264 intron sm - chr2R 19546326 intron sm - chr2R_7_19545001 chr2R_19545001 RAL-374 756 chr2R 19588732 19588778 chr2R 19588828 19588876 6 97 1.5 0.0 0.8 3.3 144 chr2R 19588732 intron sm - chr2R 19588804 intron sm - chr2R 19588876 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-374 757 chr2R 19715838 19715851 chr2R 19723327 19723337 blood 4 7488 8.0 2.0 5.0 0.7 7499 chr2R 19715838 intergenic not near genes chr2R 19719588 intergenic not near genes chr2R 19723337 intergenic not near genes chr2R_4_19715001 chr2R_19715001 RAL-374 758 chr2R 19773997 19774032 chr2R 19774129 19774165 5 133 1.5 1.5 1.5 2.0 168 chr2R 19773997 intergenic not near genes chr2R 19774081 intergenic not near genes chr2R 19774165 intergenic not near genes chr2R_5_19770001 chr2R_19770001 RAL-374 759 chr2R 19776576 19776630 chr2R 19779918 19779961 jockey 12 3340 4.0 2.0 3.0 3.0 3385 chr2R 19776576 intergenic not near genes chr2R 19778268 intergenic not near genes chr2R 19779961 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-374 760 chr2R 19914832 19914876 chr2R 19922264 19922304 mdg1 10 7432 6.0 2.0 4.0 2.0 7472 chr2R 19914832 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922304 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-374 761 chr2R 19957434 19957459 chr2R 19962634 19962679 copia 6 5204 4.0 1.5 2.8 1.6 5245 chr2R 19957434 intergenic CG44623 + chr2R 19960056 intergenic not near genes chr2R 19962679 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-374 762 chr2R 20008182 20008207 chr2R 20008291 20008295 10 106 1.5 4.0 2.8 2.6 113 chr2R 20008182 intergenic not near genes chr2R 20008238 intergenic not near genes chr2R 20008295 intergenic not near genes chr2R_10_20005001 chr2R_20005001 RAL-374 763 chr2R 20036034 20036043 chr2R 20036134 20036143 5 100 7.0 1.0 4.0 1.0 109 chr2R 20036034 intergenic not near genes chr2R 20036088 intergenic not near genes chr2R 20036143 intergenic not near genes chr2R_5_20035001 chr2R_20035001 RAL-374 764 chr2R 20036053 20036081 chr2R 20036132 20036168 4 90 3.5 1.0 2.2 1.2 115 chr2R 20036053 intergenic not near genes chr2R 20036110 intergenic not near genes chr2R 20036168 intergenic not near genes chr2R_4_20035001 chr2R_20035001 RAL-374 765 chr2R 20090480 20090490 chr2R 20090885 20090895 4 405 4.0 1.5 2.8 1.1 415 chr2R 20090480 intergenic CR44633 + chr2R 20090688 intergenic CR44633 + chr2R 20090895 5` UTR CR44633 + chr2R_4_20090001 chr2R_20090001 RAL-374 766 chr2R 20090502 20090519 chr2R 20090879 20090920 7 392 1.5 0.5 1.0 3.5 418 chr2R 20090502 intergenic CR44633 + chr2R 20090711 intergenic CR44633 + chr2R 20090920 5` UTR CR44633 + chr2R_7_20090001 chr2R_20090001 RAL-374 767 chr2R 20125724 20125738 chr2R 20125847 20125861 4 123 2.0 3.5 2.8 1.1 137 chr2R 20125724 intergenic not near genes chr2R 20125792 intergenic not near genes chr2R 20125861 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-374 768 chr2R 20205040 20205064 chr2R 20205133 20205160 5 95 2.0 5.5 3.8 1.0 120 chr2R 20205040 intergenic not near genes chr2R 20205100 intergenic not near genes chr2R 20205160 intergenic not near genes chr2R_5_20205001 chr2R_20205001 RAL-374 769 chr2R 20222767 20222795 chr2R 20222882 20222909 6 115 3.0 6.5 4.8 1.0 142 chr2R 20222767 intergenic not near genes chr2R 20222838 intergenic not near genes chr2R 20222909 intergenic not near genes chr2R_6_20220001 chr2R_20220001 RAL-374 770 chr2R 20326743 20326791 chr2R 20326840 20326885 7 96 1.5 1.5 1.5 2.8 142 chr2R 20326743 5` UTR MED8 - chr2R 20326814 intergenic MED8 -,CG8929 + chr2R 20326885 intergenic MED8 -,CG8929 + chr2R_7_20325001 chr2R_20325001 RAL-374 771 chr2R 20382326 20382337 chr2R 20382431 20382439 4 102 6.0 1.5 3.8 0.8 113 chr2R 20382326 intergenic not near genes chr2R 20382382 intergenic not near genes chr2R 20382439 intergenic not near genes chr2R_4_20380001 chr2R_20380001 RAL-374 772 chr2R 20405075 20405114 chr2R 20406011 20406032 10 930 3.0 2.5 2.8 2.6 957 chr2R 20405075 intergenic not near genes chr2R 20405554 intergenic not near genes chr2R 20406032 intergenic not near genes chr2R_10_20405001 chr2R_20405001 RAL-374 773 chr2R 20478259 20478292 chr2R 20478476 20478507 4 216 2.5 1.5 2.0 1.3 248 chr2R 20478259 3` UTR CG12484 + chr2R 20478383 3` UTR CG12484 + chr2R 20478507 3` UTR CG12484 + chr2R_4_20475001 chr2R_20475001 RAL-374 774 chr2R 20541968 20542010 chr2R 20542066 20542108 8 98 4.5 4.0 4.2 1.5 140 chr2R 20541968 intergenic not near genes chr2R 20542038 intergenic not near genes chr2R 20542108 intergenic not near genes chr2R_8_20540001 chr2R_20540001 RAL-374 775 chr2R 20739432 20739477 chr2R 20744220 20744254 F-element 12 4785 0.5 6.0 3.2 2.9 4822 chr2R 20739432 intron dpr + chr2R 20741843 intron dpr + chr2R 20744254 intron dpr + chr2R_12_20740001 chr2R_20740001 RAL-374 776 chr2R 20783294 20783332 chr2R 20788086 20788124 F-element 6 4792 2.0 3.0 2.5 1.7 4830 chr2R 20783294 intergenic not near genes chr2R 20785709 intergenic not near genes chr2R 20788124 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-374 777 chr2R 20830518 20830566 chr2R 20830618 20830664 10 99 2.0 4.0 3.0 2.5 146 chr2R 20830518 intron,intron insc -,sktl - chr2R 20830591 intron,intron insc -,sktl - chr2R 20830664 intron,intron insc -,sktl - chr2R_10_20830001 chr2R_20830001 RAL-374 778 chr2R 20848912 20848962 chr2R 20849018 20849068 15 105 1.5 1.5 1.5 6.0 156 chr2R 20848912 exon CG17999 - chr2R 20848990 intron CG17999 - chr2R 20849068 intron CG17999 - chr2R_15_20845001 chr2R_20845001 RAL-374 779 chr2R 20962888 20962935 chr2R 20963006 20963052 9 118 2.0 1.5 1.8 3.2 164 chr2R 20962888 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963052 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-374 780 chr2R 20967018 20967050 chr2R 20967114 20967147 6 97 3.0 0.0 1.5 2.4 129 chr2R 20967018 intergenic not near genes chr2R 20967082 intergenic not near genes chr2R 20967147 intergenic not near genes chr2R_6_20965001 chr2R_20965001 RAL-374 781 chr2R 21136879 21136917 chr2R 21136983 21137021 5 104 2.0 0.5 1.2 2.3 142 chr2R 21136879 intron Magi - chr2R 21136950 intron Magi - chr2R 21137021 intron Magi - chr2R_5_21135001 chr2R_21135001 RAL-374 782 chr2R 21193990 21194030 chr2R 21194094 21194134 7 99 1.5 3.5 2.5 2.0 144 chr2R 21193990 intron Lapsyn + chr2R 21194062 intron Lapsyn + chr2R 21194134 intron Lapsyn + chr2R_7_21190001 chr2R_21190001 RAL-374 783 chr2R 21344429 21344465 chr2R 21344535 21344571 6 104 1.5 2.5 2.0 2.0 142 chr2R 21344429 exon CG15666 + chr2R 21344500 intron CG15666 + chr2R 21344571 intron CG15666 + chr2R_6_21340001 chr2R_21340001 RAL-374 784 chr2R 21380171 21380198 chr2R 21380350 21380377 7 175 3.0 4.5 3.8 1.5 206 chr2R 21380171 intergenic not near genes chr2R 21380274 intergenic not near genes chr2R 21380377 intergenic not near genes chr2R_7_21380001 chr2R_21380001 RAL-374 785 chr2R 21472299 21472308 chr2R 21472397 21472406 5 96 7.0 3.0 5.0 0.8 107 chr2R 21472299 intron Sdc - chr2R 21472352 intron Sdc - chr2R 21472406 intron Sdc - chr2R_5_21470001 chr2R_21470001 RAL-374 786 chr2R 21472317 21472338 chr2R 21472392 21472436 4 92 5.0 2.5 3.8 0.8 119 chr2R 21472317 intron Sdc - chr2R 21472376 intron Sdc - chr2R 21472436 intron Sdc - chr2R_4_21470001 chr2R_21470001 RAL-374 787 chr2R 21540675 21540696 chr2R 21540913 21540934 7 238 3.0 1.0 2.0 2.3 259 chr2R 21540675 intron Egfr + chr2R 21540804 intron Egfr + chr2R 21540934 intron Egfr + chr2R_7_21540001 chr2R_21540001 RAL-374 788 chr2R 21642011 21642030 chr2R 21642086 21642091 4 74 1.0 1.5 1.2 1.8 80 chr2R 21642011 intergenic not near genes chr2R 21642051 intergenic not near genes chr2R 21642091 intergenic not near genes chr2R_4_21640001 chr2R_21640001 RAL-374 789 chr2R 21753062 21753112 chr2R 21753567 21753617 roo 23 504 2.5 4.5 3.5 5.1 555 chr2R 21753062 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753617 intergenic not near genes chr2R_23_21750001 chr2R_21750001 RAL-374 790 chr2R 21809506 21809542 chr2R 21817766 21817802 roo 12 8259 1.0 2.0 1.5 4.8 8296 chr2R 21809506 intergenic not near genes chr2R 21813654 intergenic not near genes chr2R 21817802 intergenic not near genes chr2R_12_21810001 chr2R_21810001 RAL-374 791 chr2R 21833502 21833550 chr2R 21833601 21833648 14 98 2.5 2.5 2.5 4.0 146 chr2R 21833502 exon CG34040 - chr2R 21833575 intergenic CG34040 - chr2R 21833648 intergenic CG34040 - chr2R_14_21830001 chr2R_21830001 RAL-374 792 chr2R 21857338 21857351 chr2R 21857446 21857461 4 110 7.5 3.5 5.5 0.6 123 chr2R 21857338 intergenic not near genes chr2R 21857400 intergenic not near genes chr2R 21857461 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-374 793 chr2R 21857354 21857363 chr2R 21857445 21857473 4 105 6.0 3.5 4.8 0.7 119 chr2R 21857354 intergenic not near genes chr2R 21857414 intergenic not near genes chr2R 21857473 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-374 794 chr2R 21867006 21867020 chr2R 21867114 21867128 5 108 2.0 2.5 2.2 1.6 122 chr2R 21867006 intergenic comr - chr2R 21867067 intergenic comr - chr2R 21867128 intergenic comr - chr2R_5_21865001 chr2R_21865001 RAL-374 795 chr2R 21869258 21869285 chr2R 21869366 21869393 10 108 2.0 5.5 3.8 2.1 135 chr2R 21869258 intergenic not near genes chr2R 21869326 intergenic not near genes chr2R 21869393 intergenic not near genes chr2R_10_21865001 chr2R_21865001 RAL-374 796 chr2R 21888295 21888317 chr2R 21888406 21888428 8 111 3.0 2.5 2.8 2.1 133 chr2R 21888295 intron Fili + chr2R 21888362 intron Fili + chr2R 21888428 intron Fili + chr2R_8_21885001 chr2R_21885001 RAL-374 797 chr2R 21912726 21912775 chr2R 21912827 21912858 8 90 0.0 2.0 1.0 4.0 132 chr2R 21912726 intron Fili + chr2R 21912792 intron Fili + chr2R 21912858 intron Fili + chr2R_8_21910001 chr2R_21910001 RAL-374 798 chr2R 21918780 21918821 chr2R 21918880 21918926 6 102 2.5 2.0 2.2 1.9 146 chr2R 21918780 intron Fili + chr2R 21918853 intron Fili + chr2R 21918926 intron Fili + chr2R_6_21915001 chr2R_21915001 RAL-374 799 chr2R 21922875 21922921 chr2R 21923074 21923082 11 192 3.0 3.5 3.2 2.6 207 chr2R 21922875 intron Fili + chr2R 21922978 intron Fili + chr2R 21923082 intron Fili + chr2R_11_21920001 chr2R_21920001 RAL-374 800 chr2R 21971313 21971352 chr2R 21971412 21971459 5 102 0.0 3.5 1.8 1.8 146 chr2R 21971313 intergenic CG34029 - chr2R 21971386 intergenic CG34029 - chr2R 21971459 intergenic CG34029 - chr2R_5_21970001 chr2R_21970001 RAL-374 801 chr2R 22029516 22029535 chr2R 22029614 22029633 5 97 1.0 0.0 0.5 3.3 117 chr2R 22029516 intron CG34370 - chr2R 22029574 intron CG34370 - chr2R 22029633 intron CG34370 - chr2R_5_22025001 chr2R_22025001 RAL-374 802 chr2R 22179207 22179233 chr2R 22179300 22179336 7 93 0.0 2.0 1.0 3.5 129 chr2R 22179207 intron CG11170 - chr2R 22179272 intron CG11170 - chr2R 22179336 intron CG11170 - chr2R_7_22175001 chr2R_22175001 RAL-374 803 chr2R 22189440 22189464 chr2R 22189587 22189611 5 147 1.5 2.0 1.8 1.8 171 chr2R 22189440 3` UTR Vps35 + chr2R 22189526 3` UTR Vps35 + chr2R 22189611 3` UTR Vps35 + chr2R_5_22185001 chr2R_22185001 RAL-374 804 chr2R 22248849 22248875 chr2R 22248930 22248970 5 88 3.0 6.5 4.8 0.9 121 chr2R 22248849 intron dve + chr2R 22248910 intron dve + chr2R 22248970 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-374 805 chr2R 22297712 22297725 chr2R 22297808 22297821 4 96 0.0 1.0 0.5 2.7 109 chr2R 22297712 intergenic not near genes chr2R 22297766 intergenic wdp - chr2R 22297821 intergenic wdp - chr2R_4_22295001 chr2R_22295001 RAL-374 806 chr2R 22349679 22349710 chr2R 22351483 22351514 jockey 5 1801 4.5 4.0 4.2 1.0 1835 chr2R 22349679 intron Liprin-gamma - chr2R 22350596 intron Liprin-gamma - chr2R 22351514 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-374 807 chr2R 22380347 22380386 chr2R 22380456 22380463 5 101 3.5 0.0 1.8 1.8 116 chr2R 22380347 intron wrapper + chr2R 22380405 intron wrapper + chr2R 22380463 intron wrapper + chr2R_5_22380001 chr2R_22380001 RAL-374 808 chr2R 22460361 22460405 chr2R 22460460 22460501 12 98 1.0 2.5 1.8 4.3 140 chr2R 22460361 intron CG10384 + chr2R 22460431 intron CG10384 + chr2R 22460501 intron CG10384 + chr2R_12_22460001 chr2R_22460001 RAL-374 809 chr2R 22499854 22499878 chr2R 22499927 22499972 8 90 0.0 5.0 2.5 2.3 118 chr2R 22499854 intron px - chr2R 22499913 intron px - chr2R 22499972 intron px - chr2R_8_22495001 chr2R_22495001 RAL-374 810 chr2R 22525748 22525772 chr2R 22529302 22529347 jockey 4 3564 1.5 1.5 1.5 1.6 3599 chr2R 22525748 intron px - chr2R 22527548 intron px - chr2R 22529347 intron px - chr2R_4_22525001 chr2R_22525001 RAL-374 811 chr2R 22577088 22577119 chr2R 22577188 22577219 4 100 5.5 0.0 2.8 1.1 131 chr2R 22577088 intron dnr1 - chr2R 22577154 intron dnr1 - chr2R 22577219 intron dnr1 - chr2R_4_22575001 chr2R_22575001 RAL-374 812 chr2R 22623445 22623449 chr2R 22623604 22623608 5 160 5.5 5.0 5.2 0.8 163 chr2R 22623445 intron CG33143 + chr2R 22623526 intron CG33143 + chr2R 22623608 intron CG33143 + chr2R_5_22620001 chr2R_22620001 RAL-374 813 chr2R 22623451 22623486 chr2R 22623595 22623636 10 155 2.5 3.0 2.8 2.6 185 chr2R 22623451 intron CG33143 + chr2R 22623544 intron CG33143 + chr2R 22623636 intron CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-374 814 chr2R 22641686 22641720 chr2R 22641796 22641830 5 109 3.5 4.0 3.8 1.0 144 chr2R 22641686 intergenic Ugt58Fa -,RpS24 - chr2R 22641758 intergenic Ugt58Fa -,RpS24 - chr2R 22641830 3` UTR Ugt58Fa - chr2R_5_22640001 chr2R_22640001 RAL-374 815 chr2R 22666586 22666626 chr2R 22666679 22666726 8 97 2.0 2.5 2.2 2.5 140 chr2R 22666586 3` UTR,intron CR45269 -,CR42868 + chr2R 22666656 5` UTR CR42868 + chr2R 22666726 5` UTR CR42868 + chr2R_8_22665001 chr2R_22665001 RAL-374 816 chr2R 22756611 22756650 chr2R 22756712 22756745 7 97 1.5 0.0 0.8 3.9 134 chr2R 22756611 intron,intron CG42260 -,CR30267 + chr2R 22756678 intron,intron CG42260 -,CR30267 + chr2R 22756745 intron,intron CG42260 -,CR30267 + chr2R_7_22755001 chr2R_22755001 RAL-374 817 chr2R 22860778 22860795 chr2R 22860889 22860906 7 111 2.5 0.5 1.5 2.8 128 chr2R 22860778 intergenic not near genes chr2R 22860842 intergenic not near genes chr2R 22860906 intergenic not near genes chr2R_7_22860001 chr2R_22860001 RAL-374 818 chr2R 22868264 22868284 chr2R 22868397 22868408 6 131 2.5 5.5 4.0 1.2 144 chr2R 22868264 5` UTR fd59A + chr2R 22868336 5` UTR fd59A + chr2R 22868408 5` UTR fd59A + chr2R_6_22865001 chr2R_22865001 RAL-374 819 chr2R 22951697 22951860 chr2R 22951857 22951966 7 161 0.0 0.0 0.0 7.0 269 chr2R 22951697 3` UTR CR32835 - chr2R 22951832 3` UTR CR32835 - chr2R 22951966 intron CR32835 - chr2R_7_22950001 chr2R_22950001 RAL-374 820 chr2R 22988306 22988322 chr2R 22988407 22988423 5 100 4.5 3.0 3.8 1.0 117 chr2R 22988306 intron twi + chr2R 22988364 intron twi + chr2R 22988423 intron twi + chr2R_5_22985001 chr2R_22985001 RAL-374 821 chr2R 23052632 23052683 chr2R 23052728 23052779 6 95 3.5 2.0 2.8 1.6 147 chr2R 23052632 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052779 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-374 822 chr2R 23061736 23061759 chr2R 23061841 23061896 6 128 1.5 5.0 3.2 1.4 160 chr2R 23061736 3` UTR l(2)06496 - chr2R 23061816 3` UTR l(2)06496 - chr2R 23061896 3` UTR l(2)06496 - chr2R_6_23060001 chr2R_23060001 RAL-374 823 chr2R 23101280 23101324 chr2R 23101380 23101424 9 99 0.0 1.0 0.5 6.0 144 chr2R 23101280 3` UTR CG42703 - chr2R 23101352 3` UTR CG42703 - chr2R 23101424 exon CG42703 - chr2R_9_23100001 chr2R_23100001 RAL-374 824 chr2R 23175029 23175060 chr2R 23175118 23175157 5 88 6.5 2.5 4.5 0.9 128 chr2R 23175029 intron CG34371 - chr2R 23175093 intron CG34371 - chr2R 23175157 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-374 825 chr2R 23442757 23442808 chr2R 23442849 23442897 4 90 2.5 2.5 2.5 1.1 140 chr2R 23442757 intergenic not near genes chr2R 23442827 intergenic not near genes chr2R 23442897 intergenic not near genes chr2R_4_23440001 chr2R_23440001 RAL-374 826 chr2R 23563876 23563917 chr2R 23563976 23564016 9 100 1.0 6.5 3.8 1.9 140 chr2R 23563876 3` UTR Pi3K59F + chr2R 23563946 3` UTR Pi3K59F + chr2R 23564016 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_9_23560001 chr2R_23560001 RAL-374 827 chr2R 23579981 23579998 chr2R 23580084 23580101 6 103 5.5 1.5 3.5 1.3 120 chr2R 23579981 intron apt + chr2R 23580041 intron apt + chr2R 23580101 intron apt + chr2R_6_23580001 chr2R_23580001 RAL-374 828 chr2R 23580004 23580029 chr2R 23580082 23580116 12 93 2.0 1.0 1.5 4.8 112 chr2R 23580004 intron apt + chr2R 23580060 intron apt + chr2R 23580116 intron apt + chr2R_12_23580001 chr2R_23580001 RAL-374 829 chr2R 23594820 23594867 chr2R 23595057 23595104 14 235 2.0 3.0 2.5 4.0 284 chr2R 23594820 intron apt + chr2R 23594962 intron apt + chr2R 23595104 intron apt + chr2R_14_23590001 chr2R_23590001 RAL-374 830 chr2R 23624230 23624265 chr2R 23624375 23624410 7 145 3.0 2.5 2.8 1.8 180 chr2R 23624230 intergenic not near genes chr2R 23624320 intergenic not near genes chr2R 23624410 intergenic not near genes chr2R_7_23620001 chr2R_23620001 RAL-374 831 chr2R 23784452 23784496 chr2R 23784550 23784594 9 96 1.0 4.0 2.5 2.6 142 chr2R 23784452 intron CG9850 - chr2R 23784523 intron CG9850 - chr2R 23784594 intron CG9850 - chr2R_9_23780001 chr2R_23780001 RAL-374 832 chr2R 23914294 23914332 chr2R 23921933 23921976 412 6 7638 3.0 2.5 2.8 1.6 7682 chr2R 23914294 exon kcc + chr2R 23918135 intron kcc + chr2R 23921976 exon kcc + chr2R_6_23915001 chr2R_23915001 RAL-374 833 chr2R 24025710 24025722 chr2R 24025825 24025844 5 121 5.0 3.0 4.0 1.0 134 chr2R 24025710 3` UTR,3` UTR CR45350 -,Adk2 + chr2R 24025777 3` UTR,3` UTR CR45350 -,Adk2 + chr2R 24025844 3` UTR Adk2 + chr2R_5_24025001 chr2R_24025001 RAL-374 834 chr2R 24031366 24031373 chr2R 24031470 24031477 4 104 6.0 2.0 4.0 0.8 111 chr2R 24031366 5` UTR CG30172 - chr2R 24031422 5` UTR CG30172 - chr2R 24031477 intergenic CG30172 -,Chi - chr2R_4_24030001 chr2R_24030001 RAL-374 835 chr2R 24031374 24031399 chr2R 24031466 24031502 12 100 2.5 1.0 1.8 4.3 128 chr2R 24031374 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031502 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-374 836 chr2R 24138287 24138334 chr2R 24138466 24138510 14 177 2.5 4.5 3.5 3.1 223 chr2R 24138287 intergenic CG4065 -,CR44826 + chr2R 24138398 intergenic CR44826 +,CG4065 - chr2R 24138510 intergenic CR44826 +,CG4065 - chr2R_14_24135001 chr2R_24135001 RAL-374 837 chr2R 24147054 24147093 chr2R 24154651 24154684 412 7 7588 3.0 6.5 4.8 1.2 7630 chr2R 24147054 intron Dat + chr2R 24150869 intron Dat + chr2R 24154684 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-374 838 chr2R 24177215 24177261 chr2R 24184720 24184765 412 9 7504 4.0 5.0 4.5 1.6 7550 chr2R 24177215 3` UTR Nop60B + chr2R 24180990 intron Nop60B + chr2R 24184765 3` UTR Nop60B + chr2R_9_24180001 chr2R_24180001 RAL-374 839 chr2R 24212274 24212314 chr2R 24212392 24212426 5 117 5.0 3.0 4.0 1.0 152 chr2R 24212274 intergenic CG30419 - chr2R 24212350 intergenic CG30419 - chr2R 24212426 intergenic CG30419 - chr2R_5_24210001 chr2R_24210001 RAL-374 840 chr2R 24353423 24353444 chr2R 24361804 24361804 roo 6 8378 3.0 7.5 5.2 1.0 8381 chr2R 24353423 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361804 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-374 841 chr2R 24430938 24430948 chr2R 24431029 24431056 4 104 0.0 4.0 2.0 1.3 118 chr2R 24430938 intergenic CG15873 -,Pgam5-2 - chr2R 24430997 intergenic CG15873 -,Pgam5-2 - chr2R 24431056 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-374 842 chr2R 24509289 24509339 chr2R 24509394 24509438 9 101 4.0 3.0 3.5 2.0 149 chr2R 24509289 intergenic Letm1 - chr2R 24509364 intergenic Letm1 - chr2R 24509438 intergenic Letm1 - chr2R_9_24505001 chr2R_24505001 RAL-374 843 chr2R 24520608 24520644 chr2R 24520694 24520747 7 89 1.5 0.5 1.0 3.5 139 chr2R 24520608 exon Ir60d + chr2R 24520678 exon Ir60d + chr2R 24520747 exon Ir60d + chr2R_7_24520001 chr2R_24520001 RAL-374 844 chr2R 24553651 24553666 chr2R 24553732 24553758 5 95 2.0 0.5 1.2 2.3 107 chr2R 24553651 intron,intron CG4622 -,ITP + chr2R 24553704 intron,intron CG4622 -,ITP + chr2R 24553758 intron,intron CG4622 -,ITP + chr2R_5_24550001 chr2R_24550001 RAL-374 845 chr2R 24584327 24584370 chr2R 24584428 24584472 6 102 1.5 0.0 0.8 3.3 145 chr2R 24584327 intron pio + chr2R 24584400 intron pio + chr2R 24584472 intron pio + chr2R_6_24580001 chr2R_24580001 RAL-374 846 chr2R 24592937 24592976 chr2R 24593043 24593087 12 108 3.5 0.5 2.0 4.0 150 chr2R 24592937 intron pio + chr2R 24593012 intron pio + chr2R 24593087 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-374 847 chr2R 24647573 24647611 chr2R 24655150 24655184 412 8 7572 3.5 2.0 2.8 2.1 7611 chr2R 24647573 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655184 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-374 848 chr2R 24722345 24722381 chr2R 24722447 24722483 9 101 2.5 3.5 3.0 2.2 138 chr2R 24722345 intron Mid1 - chr2R 24722414 intron Mid1 - chr2R 24722483 intron Mid1 - chr2R_9_24720001 chr2R_24720001 RAL-374 849 chr2R 24763597 24763638 chr2R 24765593 24765629 G2 6 1990 2.5 3.0 2.8 1.6 2032 chr2R 24763597 exon CG3894 + chr2R 24764613 intron CG3894 + chr2R 24765629 exon CG3894 + chr2R_6_24760001 chr2R_24760001 RAL-374 850 chr2R 24813397 24813443 chr2R 24813514 24813561 7 118 0.5 1.5 1.0 3.5 164 chr2R 24813397 intergenic not near genes chr2R 24813479 intergenic not near genes chr2R 24813561 intergenic not near genes chr2R_7_24810001 chr2R_24810001 RAL-374 851 chr2R 24883859 24883907 chr2R 24883962 24884010 10 102 3.5 2.5 3.0 2.5 151 chr2R 24883859 intron NKAIN + chr2R 24883934 intron NKAIN + chr2R 24884010 intron NKAIN + chr2R_10_24880001 chr2R_24880001 RAL-374 852 chr2R 25014533 25014572 chr2R 25014626 25014668 9 95 1.5 1.5 1.5 3.6 135 chr2R 25014533 intron uzip + chr2R 25014600 intron uzip + chr2R 25014668 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-374 853 chr2R 25018334 25018372 chr2R 25018439 25018492 13 113 1.5 1.0 1.2 5.9 158 chr2R 25018334 intron uzip + chr2R 25018413 intron uzip + chr2R 25018492 intron uzip + chr2R_13_25015001 chr2R_25015001 RAL-374 854 chr2R 25022629 25022668 chr2R 25022731 25022768 6 102 2.0 1.0 1.5 2.4 139 chr2R 25022629 intron uzip + chr2R 25022698 intron uzip + chr2R 25022768 intron uzip + chr2R_6_25020001 chr2R_25020001 RAL-374 855 chr2R 25101277 25101307 chr2R 25101397 25101429 7 121 3.5 5.0 4.2 1.3 152 chr2R 25101277 intron lov - chr2R 25101353 intron lov - chr2R 25101429 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-374 856 chr2R 25141632 25141657 chr2R 25159342 25159367 roo 6 17708 3.5 2.5 3.0 1.5 17735 chr2R 25141632 intergenic not near genes chr2R 25150500 intergenic not near genes chr2R 25159367 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-374 857 chr3L 21132 21168 chr3L 21303 21339 4 171 0.5 1.5 1.0 2.0 207 chr3L 21132 intergenic not near genes chr3L 21236 intergenic not near genes chr3L 21339 intergenic not near genes chr3L_4_20001 chr3L_20001 RAL-374 858 chr3L 34290 34336 chr3L 34598 34644 8 304 2.0 2.5 2.2 2.5 354 chr3L 34290 intergenic not near genes chr3L 34467 intergenic not near genes chr3L 34644 intergenic not near genes chr3L_8_30001 chr3L_30001 RAL-374 859 chr3L 58922 58957 chr3L 59022 59061 9 104 4.0 6.0 5.0 1.5 139 chr3L 58922 intergenic not near genes chr3L 58992 intergenic not near genes chr3L 59061 intergenic not near genes chr3L_9_55001 chr3L_55001 RAL-374 860 chr3L 110199 110238 chr3L 119386 119422 roo 10 9185 2.0 0.5 1.2 4.5 9223 chr3L 110199 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119422 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-374 861 chr3L 217364 217387 chr3L 217696 217734 7 339 3.5 3.5 3.5 1.6 370 chr3L 217364 5` UTR Kaz1-ORFB + chr3L 217549 exon Kaz1-ORFB + chr3L 217734 exon Kaz1-ORFB + chr3L_7_215001 chr3L_215001 RAL-374 862 chr3L 228166 228213 chr3L 228260 228305 16 96 2.0 4.0 3.0 4.0 139 chr3L 228166 5` UTR CR42862 + chr3L 228236 5` UTR CR42862 + chr3L 228305 5` UTR CR42862 + chr3L_16_225001 chr3L_225001 RAL-374 863 chr3L 295469 295514 chr3L 295808 295851 12 340 35.5 30.0 32.8 0.4 382 chr3L 295469 intron RhoGEF3 + chr3L 295660 intron RhoGEF3 + chr3L 295851 intron RhoGEF3 + chr3L_12_295001 chr3L_295001 RAL-374 864 chr3L 376110 376153 chr3L 376209 376252 17 99 2.0 2.0 2.0 5.7 142 chr3L 376110 intron trh - chr3L 376181 intron trh - chr3L 376252 intron trh - chr3L_17_375001 chr3L_375001 RAL-374 865 chr3L 402690 402716 chr3L 409743 409789 297 9 7064 2.5 4.5 3.5 2.0 7099 chr3L 402690 intergenic not near genes chr3L 406240 intergenic not near genes chr3L 409789 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-374 866 chr3L 421035 421059 chr3L 421151 421175 5 116 4.5 3.5 4.0 1.0 140 chr3L 421035 intergenic not near genes chr3L 421105 intergenic not near genes chr3L 421175 intergenic not near genes chr3L_5_420001 chr3L_420001 RAL-374 867 chr3L 479158 479206 chr3L 479342 479390 5 184 0.0 3.0 1.5 2.0 232 chr3L 479158 intron klar - chr3L 479274 intron klar - chr3L 479390 intron klar - chr3L_5_475001 chr3L_475001 RAL-374 868 chr3L 502757 502802 chr3L 502860 502905 6 103 3.5 4.0 3.8 1.2 148 chr3L 502757 intron klar - chr3L 502831 intron klar - chr3L 502905 intron klar - chr3L_6_500001 chr3L_500001 RAL-374 869 chr3L 514259 514301 chr3L 514354 514396 12 96 5.5 3.5 4.5 2.2 137 chr3L 514259 intron klar - chr3L 514328 intron klar - chr3L 514396 intron klar - chr3L_12_510001 chr3L_510001 RAL-374 870 chr3L 592948 592968 chr3L 593044 593063 4 96 2.0 1.5 1.8 1.4 115 chr3L 592948 intergenic MED14 + chr3L 593006 intergenic MED14 + chr3L 593063 intergenic MED14 + chr3L_4_590001 chr3L_590001 RAL-374 871 chr3L 606877 606922 chr3L 606973 607021 6 97 2.5 1.0 1.8 2.1 144 chr3L 606877 intergenic Reg-2 - chr3L 606949 intergenic Reg-2 - chr3L 607021 intergenic Reg-2 - chr3L_6_605001 chr3L_605001 RAL-374 872 chr3L 649716 649740 chr3L 649828 649849 8 112 0.5 3.0 1.8 2.9 133 chr3L 649716 intron Gale + chr3L 649782 intron Gale + chr3L 649849 intron Gale + chr3L_8_645001 chr3L_645001 RAL-374 873 chr3L 665831 665841 chr3L 666095 666120 4 279 0.0 2.0 1.0 2.0 289 chr3L 665831 intergenic not near genes chr3L 665976 intergenic not near genes chr3L 666120 intergenic not near genes chr3L_4_665001 chr3L_665001 RAL-374 874 chr3L 705888 705929 chr3L 706004 706045 11 116 2.5 4.0 3.2 2.6 157 chr3L 705888 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706045 3` UTR CG13895 - chr3L_11_705001 chr3L_705001 RAL-374 875 chr3L 822074 822091 chr3L 822174 822184 5 98 0.0 8.5 4.2 1.0 110 chr3L 822074 intergenic not near genes chr3L 822129 intergenic not near genes chr3L 822184 intergenic not near genes chr3L_5_820001 chr3L_820001 RAL-374 876 chr3L 925156 925210 chr3L 932602 932656 mdg1 9 7446 1.5 1.5 1.5 3.6 7500 chr3L 925156 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932656 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-374 877 chr3L 961011 961040 chr3L 961124 961153 6 113 1.0 0.5 0.8 3.3 142 chr3L 961011 intron Glut1 + chr3L 961082 intron Glut1 + chr3L 961153 intron Glut1 + chr3L_6_960001 chr3L_960001 RAL-374 878 chr3L 971948 971970 chr3L 972067 972084 4 117 2.5 5.5 4.0 0.8 136 chr3L 971948 intron Glut1 + chr3L 972016 intron Glut1 + chr3L 972084 intron Glut1 + chr3L_4_970001 chr3L_970001 RAL-374 879 chr3L 1040533 1040575 chr3L 1040636 1040670 10 102 3.0 0.0 1.5 4.0 137 chr3L 1040533 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040670 intron bab1 - chr3L_10_1040001 chr3L_1040001 RAL-374 880 chr3L 1047361 1047385 chr3L 1055168 1055191 412 5 7810 1.0 2.0 1.5 2.0 7830 chr3L 1047361 intron bab1 - chr3L 1051276 intron bab1 - chr3L 1055191 intron bab1 - chr3L_5_1050001 chr3L_1050001 RAL-374 881 chr3L 1103977 1103996 chr3L 1104188 1104206 6 211 3.5 4.0 3.8 1.2 229 chr3L 1103977 intergenic not near genes chr3L 1104092 intergenic not near genes chr3L 1104206 intergenic not near genes chr3L_6_1100001 chr3L_1100001 RAL-374 882 chr3L 1103998 1104013 chr3L 1104187 1104224 4 205 2.0 4.0 3.0 1.0 226 chr3L 1103998 intergenic not near genes chr3L 1104111 intergenic not near genes chr3L 1104224 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-374 883 chr3L 1154124 1154163 chr3L 1163294 1163332 roo 9 9169 1.5 3.0 2.2 2.8 9208 chr3L 1154124 intron bab2 - chr3L 1158728 intron bab2 - chr3L 1163332 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-374 884 chr3L 1257619 1257655 chr3L 1257719 1257755 7 100 0.0 3.0 1.5 2.8 136 chr3L 1257619 intron CG9134 + chr3L 1257687 intron CG9134 + chr3L 1257755 intron CG9134 + chr3L_7_1255001 chr3L_1255001 RAL-374 885 chr3L 1280224 1280271 chr3L 1280383 1280433 4 161 3.5 2.0 2.8 1.1 209 chr3L 1280224 intron CG32333 + chr3L 1280328 intron CG32333 + chr3L 1280433 intron CG32333 + chr3L_4_1280001 chr3L_1280001 RAL-374 886 chr3L 1315004 1315056 chr3L 1315102 1315118 6 80 6.0 7.0 6.5 0.8 114 chr3L 1315004 exon CG9153 + chr3L 1315061 exon CG9153 + chr3L 1315118 exon CG9153 + chr3L_6_1315001 chr3L_1315001 RAL-374 887 chr3L 1323823 1323863 chr3L 1323926 1323973 12 105 2.0 1.0 1.5 4.8 150 chr3L 1323823 intron,intron Myo61F +,CR45166 - chr3L 1323898 intron,intron Myo61F +,CR45166 - chr3L 1323973 intron,3` UTR Myo61F +,CR45166 - chr3L_12_1320001 chr3L_1320001 RAL-374 888 chr3L 1347155 1347186 chr3L 1347243 1347246 8 88 1.0 1.5 1.2 3.6 91 chr3L 1347155 intron Ptp61F - chr3L 1347200 intron Ptp61F - chr3L 1347246 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-374 889 chr3L 1358775 1358784 chr3L 1359137 1359163 4 385 5.5 0.0 2.8 1.1 388 chr3L 1358775 intron Ptp61F - chr3L 1358969 intron Ptp61F - chr3L 1359163 intron Ptp61F - chr3L_4_1355001 chr3L_1355001 RAL-374 890 chr3L 1374435 1374463 chr3L 1374511 1374513 5 72 8.0 2.5 5.2 0.8 78 chr3L 1374435 intron,intron Ptp61F -,ru + chr3L 1374474 intron,intron Ptp61F -,ru + chr3L 1374513 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-374 891 chr3L 1389765 1389779 chr3L 1389952 1389966 4 187 3.0 6.5 4.8 0.7 201 chr3L 1389765 intron Ptp61F - chr3L 1389866 intron Ptp61F - chr3L 1389966 intron Ptp61F - chr3L_4_1385001 chr3L_1385001 RAL-374 892 chr3L 1396727 1396758 chr3L 1396831 1396840 6 95 5.0 7.0 6.0 0.9 113 chr3L 1396727 intron Ptp61F - chr3L 1396784 intron Ptp61F - chr3L 1396840 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-374 893 chr3L 1415766 1415790 chr3L 1415856 1415892 8 96 3.5 0.5 2.0 2.7 126 chr3L 1415766 intron Ptp61F - chr3L 1415829 intron Ptp61F - chr3L 1415892 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-374 894 chr3L 1443506 1443533 chr3L 1443608 1443610 4 96 3.0 4.5 3.8 0.8 104 chr3L 1443506 intron Ptp61F - chr3L 1443558 intron Ptp61F - chr3L 1443610 intron Ptp61F - chr3L_4_1440001 chr3L_1440001 RAL-374 895 chr3L 1506004 1506022 chr3L 1513608 1513638 17.6 6 7610 4.0 4.5 4.2 1.2 7634 chr3L 1506004 intron,intron Psa +,cue - chr3L 1509821 intron,intron Psa +,cue - chr3L 1513638 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-374 896 chr3L 1536873 1536886 chr3L 1536977 1536990 5 103 4.5 6.0 5.2 0.8 117 chr3L 1536873 intergenic CG12091 -,CG7852 + chr3L 1536932 intergenic CG12091 -,CG7852 + chr3L 1536990 intergenic CG7852 +,CG12091 - chr3L_5_1535001 chr3L_1535001 RAL-374 897 chr3L 1639197 1639241 chr3L 1639396 1639442 10 200 1.0 5.5 3.2 2.4 245 chr3L 1639197 5` UTR metl - chr3L 1639320 intergenic metl -,Bgb + chr3L 1639442 intergenic metl -,Bgb + chr3L_10_1635001 chr3L_1635001 RAL-374 898 chr3L 1728502 1728550 chr3L 1728604 1728655 5 101 4.5 1.5 3.0 1.2 153 chr3L 1728502 intron drpr - chr3L 1728578 intron drpr - chr3L 1728655 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-374 899 chr3L 1740853 1740871 chr3L 1741103 1741133 pogo 9 261 4.0 6.5 5.2 1.5 280 chr3L 1740853 intron Gk + chr3L 1740993 intron Gk + chr3L 1741133 intron Gk + chr3L_9_1740001 chr3L_1740001 RAL-374 900 chr3L 1805679 1805709 chr3L 1805873 1805895 8 193 3.5 2.0 2.8 2.1 216 chr3L 1805679 exon CG42676 + chr3L 1805787 intron CG42676 + chr3L 1805895 intron CG42676 + chr3L_8_1805001 chr3L_1805001 RAL-374 901 chr3L 1990387 1990431 chr3L 1990566 1990604 11 176 5.0 3.5 4.2 2.1 217 chr3L 1990387 intergenic not near genes chr3L 1990496 intergenic not near genes chr3L 1990604 intergenic not near genes chr3L_11_1990001 chr3L_1990001 RAL-374 902 chr3L 2020855 2020899 chr3L 2020953 2020995 11 97 6.0 3.5 4.8 1.9 140 chr3L 2020855 exon CG42357 - chr3L 2020925 exon CG42357 - chr3L 2020995 exon CG42357 - chr3L_11_2020001 chr3L_2020001 RAL-374 903 chr3L 2168770 2168800 chr3L 2168871 2168911 10 110 3.5 4.5 4.0 2.0 141 chr3L 2168770 exon CG15879 - chr3L 2168840 intron CG15879 - chr3L 2168911 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-374 904 chr3L 2178167 2178205 chr3L 2178418 2178461 7 255 3.0 3.0 3.0 1.8 294 chr3L 2178167 intergenic not near genes chr3L 2178314 intergenic not near genes chr3L 2178461 intergenic not near genes chr3L_7_2175001 chr3L_2175001 RAL-374 905 chr3L 2293397 2293421 chr3L 2293477 2293487 6 79 4.5 4.0 4.2 1.2 90 chr3L 2293397 intron MsR2 + chr3L 2293442 intron MsR2 + chr3L 2293487 intron MsR2 + chr3L_6_2290001 chr3L_2290001 RAL-374 906 chr3L 2293835 2293844 chr3L 2293933 2293942 7 98 3.5 0.0 1.8 2.5 107 chr3L 2293835 intron MsR2 + chr3L 2293888 intron MsR2 + chr3L 2293942 intron MsR2 + chr3L_7_2290001 chr3L_2290001 RAL-374 907 chr3L 2307988 2308025 chr3L 2308114 2308149 9 126 5.0 2.0 3.5 2.0 161 chr3L 2307988 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308149 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-374 908 chr3L 2331572 2331584 chr3L 2331668 2331673 4 94 6.5 5.5 6.0 0.6 101 chr3L 2331572 intron MsR1 + chr3L 2331622 intron MsR1 + chr3L 2331673 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-374 909 chr3L 2411318 2411344 chr3L 2411418 2411438 9 96 0.5 1.5 1.0 4.5 120 chr3L 2411318 intron CG45186 + chr3L 2411378 intron CG45186 + chr3L 2411438 intron CG45186 + chr3L_9_2410001 chr3L_2410001 RAL-374 910 chr3L 2447488 2447518 chr3L 2456664 2456694 roo 6 9176 6.5 1.0 3.8 1.2 9206 chr3L 2447488 intron CG45186 + chr3L 2452091 intron CG45186 + chr3L 2456694 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-374 911 chr3L 2478880 2479033 chr3L 2478980 2479131 14 112 1.5 2.0 1.8 5.0 251 chr3L 2478880 intron CG45186 + chr3L 2479006 intron CG45186 + chr3L 2479131 intron CG45186 + chr3L_14_2475001 chr3L_2475001 RAL-374 912 chr3L 2493802 2493848 chr3L 2493900 2493956 6 104 2.5 0.0 1.2 2.7 154 chr3L 2493802 intron CG45186 + chr3L 2493879 intron CG45186 + chr3L 2493956 intron CG45186 + chr3L_6_2490001 chr3L_2490001 RAL-374 913 chr3L 2523557 2523604 chr3L 2523656 2523699 13 99 3.0 0.0 1.5 5.2 142 chr3L 2523557 intron Spn - chr3L 2523628 intron Spn - chr3L 2523699 intron Spn - chr3L_13_2520001 chr3L_2520001 RAL-374 914 chr3L 2590314 2590345 chr3L 2590779 2590820 14 472 0.5 4.5 2.5 4.0 506 chr3L 2590314 intron dos + chr3L 2590567 intron dos + chr3L 2590820 intron dos + chr3L_14_2590001 chr3L_2590001 RAL-374 915 chr3L 2609659 2609681 chr3L 2609755 2609777 6 96 1.0 0.5 0.8 3.3 118 chr3L 2609659 intron Pxn - chr3L 2609718 intron Pxn - chr3L 2609777 intron Pxn - chr3L_6_2605001 chr3L_2605001 RAL-374 916 chr3L 2683927 2683959 chr3L 2684023 2684055 9 95 4.5 2.5 3.5 2.0 128 chr3L 2683927 intron Fife - chr3L 2683991 intron Fife - chr3L 2684055 intron Fife - chr3L_9_2680001 chr3L_2680001 RAL-374 917 chr3L 2691783 2691826 chr3L 2691913 2691956 11 130 1.5 2.5 2.0 3.7 173 chr3L 2691783 intron Fife - chr3L 2691870 intron Fife - chr3L 2691956 intron Fife - chr3L_11_2690001 chr3L_2690001 RAL-374 918 chr3L 2766716 2766760 chr3L 2766833 2766877 12 116 1.5 3.0 2.2 3.8 161 chr3L 2766716 intergenic Mrtf -,Non2 + chr3L 2766796 intergenic Non2 +,Mrtf - chr3L 2766877 intergenic Non2 +,Mrtf - chr3L_12_2765001 chr3L_2765001 RAL-374 919 chr3L 2795707 2795743 chr3L 2795850 2795885 5 143 4.0 3.0 3.5 1.1 178 chr3L 2795707 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795885 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-374 920 chr3L 2927820 2927852 chr3L 2936117 2936149 Tirant 4 8297 5.5 1.0 3.2 1.0 8329 chr3L 2927820 intron Shab + chr3L 2931984 intron Shab + chr3L 2936149 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-374 921 chr3L 2989541 2989585 chr3L 2989647 2989694 11 109 2.0 2.0 2.0 3.7 153 chr3L 2989541 intergenic not near genes chr3L 2989618 intergenic not near genes chr3L 2989694 intergenic not near genes chr3L_11_2985001 chr3L_2985001 RAL-374 922 chr3L 3269087 3269091 chr3L 3269197 3269202 4 110 1.5 2.0 1.8 1.4 115 chr3L 3269087 intergenic CG34265 + chr3L 3269144 intergenic CG34265 + chr3L 3269202 intergenic CG34265 + chr3L_4_3265001 chr3L_3265001 RAL-374 923 chr3L 3281458 3281466 chr3L 3281933 3281958 Doc 6 493 1.5 4.0 2.8 1.6 500 chr3L 3281458 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281958 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-374 924 chr3L 3285633 3285668 chr3L 3285734 3285770 6 102 4.0 2.0 3.0 1.5 137 chr3L 3285633 intron CG12017 + chr3L 3285702 intron CG12017 + chr3L 3285770 intron CG12017 + chr3L_6_3285001 chr3L_3285001 RAL-374 925 chr3L 3317529 3317559 chr3L 3317615 3317658 5 96 0.0 1.0 0.5 3.3 129 chr3L 3317529 intergenic Drsl5 +,PIG-C - chr3L 3317594 intergenic PIG-C -,Drsl5 + chr3L 3317658 intergenic PIG-C - chr3L_5_3315001 chr3L_3315001 RAL-374 926 chr3L 3388591 3388612 chr3L 3388682 3388722 6 105 1.0 3.5 2.2 1.9 131 chr3L 3388591 intergenic not near genes chr3L 3388656 intergenic not near genes chr3L 3388722 intergenic not near genes chr3L_6_3385001 chr3L_3385001 RAL-374 927 chr3L 3436276 3436315 chr3L 3436375 3436414 4 99 2.5 4.0 3.2 1.0 138 chr3L 3436276 intron eIF5B - chr3L 3436345 intron eIF5B - chr3L 3436414 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-374 928 chr3L 3470141 3470178 chr3L 3470237 3470274 8 96 0.0 1.5 0.8 4.4 133 chr3L 3470141 intron CG14971 - chr3L 3470208 intron CG14971 - chr3L 3470274 intron CG14971 - chr3L_8_3470001 chr3L_3470001 RAL-374 929 chr3L 3475058 3475106 chr3L 3475521 3475557 jockey 4 460 3.0 1.5 2.2 1.2 499 chr3L 3475058 intron CG42324 + chr3L 3475308 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-374 930 chr3L 3577730 3577762 chr3L 3577827 3577860 7 98 2.0 3.5 2.8 1.8 130 chr3L 3577730 intron Eip63E + chr3L 3577795 intron Eip63E + chr3L 3577860 intron Eip63E + chr3L_7_3575001 chr3L_3575001 RAL-374 931 chr3L 3593880 3593897 chr3L 3593985 3594002 4 105 2.5 0.0 1.2 1.8 122 chr3L 3593880 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593941 intron Eip63E + chr3L 3594002 intron Eip63E + chr3L_4_3590001 chr3L_3590001 RAL-374 932 chr3L 3601281 3601290 chr3L 3606612 3606621 copia 4 5330 6.5 2.0 4.2 0.8 5340 chr3L 3601281 intron Eip63E + chr3L 3603951 intron Eip63E + chr3L 3606621 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-374 933 chr3L 3601292 3601314 chr3L 3606608 3606645 copia 11 5324 5.5 1.5 3.5 2.4 5353 chr3L 3601292 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606645 intron Eip63E + chr3L_11_3600001 chr3L_3600001 RAL-374 934 chr3L 3627217 3627261 chr3L 3627341 3627386 7 125 2.0 2.5 2.2 2.2 169 chr3L 3627217 intron dar1 + chr3L 3627302 intron dar1 + chr3L 3627386 intron dar1 + chr3L_7_3625001 chr3L_3625001 RAL-374 935 chr3L 3638579 3638611 chr3L 3638849 3638901 7 285 1.5 1.5 1.5 2.8 322 chr3L 3638579 intron dar1 + chr3L 3638740 intron dar1 + chr3L 3638901 intron dar1 + chr3L_7_3635001 chr3L_3635001 RAL-374 936 chr3L 3766721 3766740 chr3L 3766827 3766845 6 106 2.5 2.0 2.2 1.9 124 chr3L 3766721 intron CG32264 - chr3L 3766783 intron CG32264 - chr3L 3766845 intron CG32264 - chr3L_6_3765001 chr3L_3765001 RAL-374 937 chr3L 3795581 3795619 chr3L 3795678 3795705 9 96 3.0 3.5 3.2 2.1 124 chr3L 3795581 intron CG32264 - chr3L 3795643 intron CG32264 - chr3L 3795705 intron CG32264 - chr3L_9_3795001 chr3L_3795001 RAL-374 938 chr3L 3833723 3833751 chr3L 3833984 3834012 pogo 5 260 1.5 1.5 1.5 2.0 289 chr3L 3833723 intron enc + chr3L 3833868 intron enc + chr3L 3834012 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-374 939 chr3L 3890946 3890986 chr3L 3891046 3891087 5 101 1.5 0.0 0.8 2.8 141 chr3L 3890946 intergenic not near genes chr3L 3891016 intergenic not near genes chr3L 3891087 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-374 940 chr3L 3925987 3926026 chr3L 3926098 3926139 6 112 4.5 0.0 2.2 1.9 152 chr3L 3925987 intron Eip63F-1 - chr3L 3926063 intron Eip63F-1 - chr3L 3926139 intron Eip63F-1 - chr3L_6_3925001 chr3L_3925001 RAL-374 941 chr3L 4146805 4146834 chr3L 4146904 4146935 4 101 0.0 4.0 2.0 1.3 130 chr3L 4146805 intergenic not near genes chr3L 4146870 intergenic not near genes chr3L 4146935 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-374 942 chr3L 4170153 4170162 chr3L 4170251 4170260 4 98 0.5 1.5 1.0 2.0 107 chr3L 4170153 intergenic Ero1L + chr3L 4170206 intergenic Ero1L + chr3L 4170260 intergenic Ero1L + chr3L_4_4170001 chr3L_4170001 RAL-374 943 chr3L 4342407 4342423 chr3L 4342490 4342522 7 91 5.5 1.5 3.5 1.6 115 chr3L 4342407 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342522 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-374 944 chr3L 4477577 4477626 chr3L 4478134 4478182 13 560 23.0 20.5 21.8 0.6 605 chr3L 4477577 intergenic not near genes chr3L 4477880 intergenic not near genes chr3L 4478182 intergenic not near genes chr3L_13_4475001 chr3L_4475001 RAL-374 945 chr3L 4515525 4515569 chr3L 4515622 4515666 5 97 0.0 3.5 1.8 1.8 141 chr3L 4515525 intron Tie - chr3L 4515596 intron Tie - chr3L 4515666 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-374 946 chr3L 4536350 4536384 chr3L 4536469 4536504 6 120 2.5 3.0 2.8 1.6 154 chr3L 4536350 exon CG11353 + chr3L 4536427 intron CG11353 + chr3L 4536504 intron CG11353 + chr3L_6_4535001 chr3L_4535001 RAL-374 947 chr3L 4544175 4544212 chr3L 4544637 4544674 9 462 18.0 10.0 14.0 0.6 499 chr3L 4544175 intron CG11357 + chr3L 4544424 intron CG11357 + chr3L 4544674 intron CG11357 + chr3L_9_4540001 chr3L_4540001 RAL-374 948 chr3L 4748694 4748731 chr3L 4748802 4748837 8 105 1.5 1.5 1.5 3.2 143 chr3L 4748694 intron RhoGEF64C + chr3L 4748766 intron RhoGEF64C + chr3L 4748837 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-374 949 chr3L 4775827 4775879 chr3L 4775932 4775987 10 108 1.5 2.0 1.8 3.6 160 chr3L 4775827 intron RhoGEF64C + chr3L 4775907 intron RhoGEF64C + chr3L 4775987 intron RhoGEF64C + chr3L_10_4775001 chr3L_4775001 RAL-374 950 chr3L 4797961 4797989 chr3L 4798041 4798080 8 93 0.0 0.0 0.0 8.0 119 chr3L 4797961 intergenic not near genes chr3L 4798020 intergenic not near genes chr3L 4798080 intergenic not near genes chr3L_8_4795001 chr3L_4795001 RAL-374 951 chr3L 4858287 4858336 chr3L 4858397 4858410 8 92 3.0 2.5 2.8 2.1 123 chr3L 4858287 intergenic not near genes chr3L 4858348 intergenic not near genes chr3L 4858410 intergenic not near genes chr3L_8_4855001 chr3L_4855001 RAL-374 952 chr3L 4901109 4901158 chr3L 4907319 4907368 diver 10 6209 2.0 5.0 3.5 2.2 6259 chr3L 4901109 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907368 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-374 953 chr3L 4958412 4958431 chr3L 4958500 4958538 6 104 4.0 2.0 3.0 1.5 126 chr3L 4958412 intron Con - chr3L 4958475 intron Con - chr3L 4958538 intron Con - chr3L_6_4955001 chr3L_4955001 RAL-374 954 chr3L 5034149 5034189 chr3L 5043321 5043345 roo 7 9170 0.5 2.0 1.2 3.2 9196 chr3L 5034149 intron Con - chr3L 5038747 intron Con - chr3L 5043345 intron Con - chr3L_7_5035001 chr3L_5035001 RAL-374 955 chr3L 5045436 5045480 chr3L 5050237 5050281 Doc 13 4801 1.5 1.5 1.5 5.2 4845 chr3L 5045436 intron Con - chr3L 5047858 intron Con - chr3L 5050281 intron Con - chr3L_13_5045001 chr3L_5045001 RAL-374 956 chr3L 5101181 5101209 chr3L 5101280 5101309 5 100 2.0 0.0 1.0 2.5 128 chr3L 5101181 intergenic not near genes chr3L 5101245 intergenic not near genes chr3L 5101309 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-374 957 chr3L 5104468 5104512 chr3L 5124622 5124666 4 20154 1.5 2.5 2.0 1.3 20198 chr3L 5104468 intergenic not near genes chr3L 5114567 intergenic not near genes chr3L 5124666 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-374 958 chr3L 5164631 5164664 chr3L 5164727 5164760 4 96 1.5 3.5 2.5 1.1 129 chr3L 5164631 intron shep - chr3L 5164696 intron shep - chr3L 5164760 intron shep - chr3L_4_5160001 chr3L_5160001 RAL-374 959 chr3L 5172572 5172612 chr3L 5172679 5172720 5 107 3.0 3.5 3.2 1.2 148 chr3L 5172572 intron shep - chr3L 5172646 intron shep - chr3L 5172720 intron shep - chr3L_5_5170001 chr3L_5170001 RAL-374 960 chr3L 5220822 5220841 chr3L 5220937 5220955 5 115 4.5 4.5 4.5 0.9 133 chr3L 5220822 intron shep - chr3L 5220888 intron shep - chr3L 5220955 intron shep - chr3L_5_5220001 chr3L_5220001 RAL-374 961 chr3L 5299154 5299167 chr3L 5306600 5306613 Quasimodo 4 7446 0.5 0.0 0.2 3.3 7459 chr3L 5299154 intergenic not near genes chr3L 5302884 intergenic not near genes chr3L 5306613 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-374 962 chr3L 5327451 5327473 chr3L 5327555 5327578 7 103 1.0 2.5 1.8 2.5 127 chr3L 5327451 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327578 intergenic not near genes chr3L_7_5325001 chr3L_5325001 RAL-374 963 chr3L 5388181 5388232 chr3L 5388523 5388576 13 341 4.5 3.0 3.8 2.7 395 chr3L 5388181 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388576 intergenic not near genes chr3L_13_5385001 chr3L_5385001 RAL-374 964 chr3L 5437403 5437448 chr3L 5437503 5437548 6 97 2.0 0.5 1.2 2.7 145 chr3L 5437403 intron CG34391 + chr3L 5437476 intron CG34391 + chr3L 5437548 intron CG34391 + chr3L_6_5435001 chr3L_5435001 RAL-374 965 chr3L 5474552 5474591 chr3L 5474971 5475009 5 418 4.5 0.0 2.2 1.6 457 chr3L 5474552 intergenic not near genes chr3L 5474780 intergenic not near genes chr3L 5475009 intergenic not near genes chr3L_5_5470001 chr3L_5470001 RAL-374 966 chr3L 5498370 5498428 chr3L 5498479 5498502 9 94 0.5 5.5 3.0 2.2 132 chr3L 5498370 exon blanks - chr3L 5498436 exon blanks - chr3L 5498502 exon blanks - chr3L_9_5495001 chr3L_5495001 RAL-374 967 chr3L 5537706 5537741 chr3L 5538061 5538103 jockey 7 361 3.5 6.0 4.8 1.2 397 chr3L 5537706 intergenic not near genes chr3L 5537904 intergenic not near genes chr3L 5538103 intergenic CG10625 - chr3L_7_5535001 chr3L_5535001 RAL-374 968 chr3L 5561647 5561698 chr3L 5561749 5561800 7 102 0.5 1.5 1.0 3.5 153 chr3L 5561647 intergenic sinu -,Sucb - chr3L 5561724 3` UTR Sucb - chr3L 5561800 3` UTR Sucb - chr3L_7_5560001 chr3L_5560001 RAL-374 969 chr3L 5677167 5677265 chr3L 5677263 5677368 8 122 0.0 0.0 0.0 8.0 201 chr3L 5677167 intron sif + chr3L 5677268 intron sif + chr3L 5677368 intron sif + chr3L_8_5675001 chr3L_5675001 RAL-374 970 chr3L 5713999 5714014 chr3L 5714275 5714307 6 295 2.0 4.0 3.0 1.5 308 chr3L 5713999 intron,3` UTR sif +,CG44521 + chr3L 5714153 intron sif + chr3L 5714307 intron sif + chr3L_6_5710001 chr3L_5710001 RAL-374 971 chr3L 5910020 5910057 chr3L 5910280 5910318 pogo 9 260 3.0 2.5 2.8 2.4 298 chr3L 5910020 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910318 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-374 972 chr3L 5926333 5926343 chr3L 5926519 5926553 BS 6 201 0.5 6.0 3.2 1.4 220 chr3L 5926333 intron Vap-33B + chr3L 5926443 intron Vap-33B + chr3L 5926553 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-374 973 chr3L 6001666 6001701 chr3L 6004386 6004421 jockey 6 2720 4.5 1.5 3.0 1.5 2755 chr3L 6001666 intron PVRAP + chr3L 6003044 intron PVRAP + chr3L 6004421 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-374 974 chr3L 6040350 6040380 chr3L 6042726 6042756 Doc 4 2376 2.5 3.5 3.0 1.0 2406 chr3L 6040350 intergenic Jon65Aiv + chr3L 6041553 intergenic not near genes chr3L 6042756 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-374 975 chr3L 6102987 6103014 chr3L 6103111 6103138 10 124 3.5 4.0 3.8 2.1 151 chr3L 6102987 intron Ets65A + chr3L 6103062 intron Ets65A + chr3L 6103138 intron Ets65A + chr3L_10_6100001 chr3L_6100001 RAL-374 976 chr3L 6142489 6142520 chr3L 6142719 6142751 6 230 1.0 0.5 0.8 3.3 262 chr3L 6142489 intergenic Cpr65Aw - chr3L 6142620 intergenic Cpr65Aw - chr3L 6142751 intergenic Cpr65Aw - chr3L_6_6140001 chr3L_6140001 RAL-374 977 chr3L 6162336 6162385 chr3L 6162437 6162454 5 92 3.0 1.5 2.2 1.6 118 chr3L 6162336 intergenic CR45744 - chr3L 6162395 intergenic CR45744 - chr3L 6162454 intergenic CR45744 - chr3L_5_6160001 chr3L_6160001 RAL-374 978 chr3L 6169111 6169134 chr3L 6169210 6169233 5 99 3.0 5.5 4.2 1.0 122 chr3L 6169111 3` UTR CG10289 - chr3L 6169172 3` UTR CG10289 - chr3L 6169233 3` UTR CG10289 - chr3L_5_6165001 chr3L_6165001 RAL-374 979 chr3L 6220899 6220948 chr3L 6230071 6230103 roo 13 9170 1.5 5.0 3.2 3.1 9204 chr3L 6220899 5` UTR pncr008:3L + chr3L 6225501 intergenic not near genes chr3L 6230103 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-374 980 chr3L 6233290 6233338 chr3L 6233431 6233477 7 137 1.5 4.0 2.8 1.8 187 chr3L 6233290 intron BG642312 - chr3L 6233384 intergenic BG642312 -,CG42714 - chr3L 6233477 intergenic CG42714 -,BG642312 - chr3L_7_6230001 chr3L_6230001 RAL-374 981 chr3L 6267602 6267614 chr3L 6267706 6267713 4 103 5.0 2.0 3.5 0.9 111 chr3L 6267602 intergenic not near genes chr3L 6267658 intergenic not near genes chr3L 6267713 intergenic not near genes chr3L_4_6265001 chr3L_6265001 RAL-374 982 chr3L 6267626 6267643 chr3L 6267703 6267747 5 97 2.0 2.0 2.0 1.7 121 chr3L 6267626 intergenic not near genes chr3L 6267686 intergenic not near genes chr3L 6267747 intergenic not near genes chr3L_5_6265001 chr3L_6265001 RAL-374 983 chr3L 6325914 6325948 chr3L 6326190 6326225 10 280 18.0 21.5 19.8 0.5 311 chr3L 6325914 exon Or65b + chr3L 6326070 exon Or65b + chr3L 6326225 exon Or65b + chr3L_10_6325001 chr3L_6325001 RAL-374 984 chr3L 6334996 6335038 chr3L 6335484 6335513 297 4 486 2.5 4.0 3.2 1.0 517 chr3L 6334996 intron CG13300 - chr3L 6335254 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-374 985 chr3L 6362364 6362410 chr3L 6362461 6362507 7 97 2.0 0.5 1.2 3.2 143 chr3L 6362364 intergenic not near genes chr3L 6362436 intergenic not near genes chr3L 6362507 intergenic not near genes chr3L_7_6360001 chr3L_6360001 RAL-374 986 chr3L 6405660 6405679 chr3L 6432144 6432163 roo 4 26484 5.0 4.0 4.5 0.7 26503 chr3L 6405660 intron CG42747 + chr3L 6418912 intron CG42747 + chr3L 6432163 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-374 987 chr3L 6610180 6610221 chr3L 6610305 6610343 15 121 2.5 2.0 2.2 4.7 163 chr3L 6610180 intron CG8398 + chr3L 6610262 intron CG8398 + chr3L 6610343 intron CG8398 + chr3L_15_6610001 chr3L_6610001 RAL-374 988 chr3L 6619247 6619282 chr3L 6619430 6619465 6 183 5.0 2.5 3.8 1.2 218 chr3L 6619247 intergenic CG8398 + chr3L 6619356 intergenic CG8398 + chr3L 6619465 intergenic CG8398 + chr3L_6_6615001 chr3L_6615001 RAL-374 989 chr3L 6621724 6621752 chr3L 6621927 6621955 5 202 2.5 2.0 2.2 1.6 231 chr3L 6621724 intergenic not near genes chr3L 6621840 intergenic not near genes chr3L 6621955 intergenic not near genes chr3L_5_6620001 chr3L_6620001 RAL-374 990 chr3L 6652058 6652108 chr3L 6652156 6652206 16 98 3.0 2.5 2.8 4.2 148 chr3L 6652058 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652206 intergenic not near genes chr3L_16_6650001 chr3L_6650001 RAL-374 991 chr3L 6855917 6855954 chr3L 6860721 6860758 Doc 6 4804 1.0 5.0 3.0 1.5 4841 chr3L 6855917 intergenic not near genes chr3L 6858338 intergenic not near genes chr3L 6860758 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-374 992 chr3L 6864231 6864244 chr3L 6866695 6866709 4 2464 11.5 20.0 15.8 0.2 2478 chr3L 6864231 intergenic not near genes chr3L 6865470 3` UTR CR45115 - chr3L 6866709 intergenic CR45115 - chr3L_4_6865001 chr3L_6865001 RAL-374 993 chr3L 6887530 6887542 chr3L 6895017 6895054 roo 4 7506 2.5 0.0 1.2 1.8 7524 chr3L 6887530 intergenic not near genes chr3L 6891292 intergenic not near genes chr3L 6895054 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-374 994 chr3L 6906203 6906251 chr3L 6906302 6906350 11 99 1.5 1.5 1.5 4.4 147 chr3L 6906203 intergenic not near genes chr3L 6906276 intergenic not near genes chr3L 6906350 intergenic not near genes chr3L_11_6905001 chr3L_6905001 RAL-374 995 chr3L 6934324 6934355 chr3L 6934455 6934483 4 130 3.0 2.5 2.8 1.1 159 chr3L 6934324 exon CG14820 + chr3L 6934404 intron CG14820 + chr3L 6934483 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-374 996 chr3L 6981931 6981936 chr3L 6982102 6982110 4 173 0.0 2.5 1.2 1.8 179 chr3L 6981931 intergenic not near genes chr3L 6982020 intergenic not near genes chr3L 6982110 intergenic not near genes chr3L_4_6980001 chr3L_6980001 RAL-374 997 chr3L 6989273 6989319 chr3L 6989371 6989416 5 98 2.0 0.5 1.2 2.3 143 chr3L 6989273 intergenic not near genes chr3L 6989344 intergenic not near genes chr3L 6989416 intergenic not near genes chr3L_5_6985001 chr3L_6985001 RAL-374 998 chr3L 7117753 7117806 chr3L 7117856 7117909 7 102 4.5 2.5 3.5 1.6 156 chr3L 7117753 intron form3 + chr3L 7117831 intron form3 + chr3L 7117909 intron form3 + chr3L_7_7115001 chr3L_7115001 RAL-374 999 chr3L 7129961 7129974 chr3L 7130172 7130186 BS 5 211 1.0 4.0 2.5 1.4 225 chr3L 7129961 intergenic CG15829 + chr3L 7130074 intergenic CG15829 + chr3L 7130186 intergenic not near genes chr3L_5_7130001 chr3L_7130001 RAL-374 1000 chr3L 7153325 7153353 chr3L 7153414 7153449 8 92 2.5 4.0 3.2 1.9 124 chr3L 7153325 intron corn - chr3L 7153387 intron corn - chr3L 7153449 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-374 1001 chr3L 7318166 7318212 chr3L 7318280 7318311 10 111 2.0 1.0 1.5 4.0 145 chr3L 7318166 intergenic not near genes chr3L 7318238 intergenic not near genes chr3L 7318311 intergenic not near genes chr3L_10_7315001 chr3L_7315001 RAL-374 1002 chr3L 7377298 7377346 chr3L 7380423 7380471 297 6 3125 1.0 1.0 1.0 3.0 3173 chr3L 7377298 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380471 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-374 1003 chr3L 7403598 7403643 chr3L 7403697 7403703 9 94 2.5 2.0 2.2 2.8 105 chr3L 7403598 exon CG8560 - chr3L 7403650 intron CG8560 - chr3L 7403703 intron CG8560 - chr3L_9_7400001 chr3L_7400001 RAL-374 1004 chr3L 7450677 7450687 chr3L 7450780 7450790 4 103 4.5 2.5 3.5 0.9 113 chr3L 7450677 intron CG42458 + chr3L 7450734 intron CG42458 + chr3L 7450790 intron CG42458 + chr3L_4_7450001 chr3L_7450001 RAL-374 1005 chr3L 7691818 7691854 chr3L 7691930 7691955 13 109 6.0 3.0 4.5 2.4 137 chr3L 7691818 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691886 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691955 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_13_7690001 chr3L_7690001 RAL-374 1006 chr3L 7792046 7792075 chr3L 7792150 7792165 12 102 5.0 4.0 4.5 2.2 119 chr3L 7792046 intron CG32369 - chr3L 7792106 intron CG32369 - chr3L 7792165 intron CG32369 - chr3L_12_7790001 chr3L_7790001 RAL-374 1007 chr3L 7793700 7793742 chr3L 7800772 7800814 297 9 7071 3.0 3.5 3.2 2.1 7114 chr3L 7793700 intron CG32369 - chr3L 7797257 intron CG32369 - chr3L 7800814 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-374 1008 chr3L 7886496 7886534 chr3L 7889040 7889064 Stalker4 5 2538 0.5 2.0 1.2 2.3 2568 chr3L 7886496 intron CG32365 + chr3L 7887780 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-374 1009 chr3L 7916815 7916850 chr3L 7926006 7926041 roo 5 9191 1.5 1.0 1.2 2.3 9226 chr3L 7916815 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926041 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-374 1010 chr3L 7985362 7985385 chr3L 7987702 7987734 NOF 11 2347 1.5 4.5 3.0 2.8 2372 chr3L 7985362 intron nmo + chr3L 7986548 intron nmo + chr3L 7987734 intron nmo + chr3L_11_7985001 chr3L_7985001 RAL-374 1011 chr3L 7995941 7995953 chr3L 7996069 7996081 5 128 5.0 0.0 2.5 1.4 140 chr3L 7995941 intron nmo + chr3L 7996011 intron nmo + chr3L 7996081 intron nmo + chr3L_5_7995001 chr3L_7995001 RAL-374 1012 chr3L 8070602 8070610 chr3L 8070727 8070735 5 125 0.0 0.5 0.2 4.2 133 chr3L 8070602 intron Ect4 + chr3L 8070668 intron Ect4 + chr3L 8070735 intron Ect4 + chr3L_5_8070001 chr3L_8070001 RAL-374 1013 chr3L 8211713 8211750 chr3L 8211821 8211832 9 104 4.0 2.0 3.0 2.2 119 chr3L 8211713 intergenic CG8006 + chr3L 8211772 intergenic CG8006 + chr3L 8211832 intergenic CG8006 + chr3L_9_8210001 chr3L_8210001 RAL-374 1014 chr3L 8274822 8274828 chr3L 8274956 8274962 4 134 5.5 0.0 2.8 1.1 140 chr3L 8274822 intron Dscam4 + chr3L 8274892 intron Dscam4 + chr3L 8274962 intron Dscam4 + chr3L_4_8270001 chr3L_8270001 RAL-374 1015 chr3L 8454090 8454131 chr3L 8454242 8454284 7 153 0.5 2.0 1.2 3.2 194 chr3L 8454090 intron Gug + chr3L 8454187 intron Gug + chr3L 8454284 intron Gug + chr3L_7_8450001 chr3L_8450001 RAL-374 1016 chr3L 8456467 8456484 chr3L 8456579 8456597 4 113 5.0 11.0 8.0 0.4 130 chr3L 8456467 intron Gug + chr3L 8456532 intron Gug + chr3L 8456597 intron Gug + chr3L_4_8455001 chr3L_8455001 RAL-374 1017 chr3L 8584921 8584943 chr3L 8585035 8585057 7 114 1.0 5.5 3.2 1.7 136 chr3L 8584921 intron CG43078 + chr3L 8584989 intron CG43078 + chr3L 8585057 intron CG43078 + chr3L_7_8580001 chr3L_8580001 RAL-374 1018 chr3L 8643564 8643598 chr3L 8643660 8643694 8 96 2.5 4.5 3.5 1.8 130 chr3L 8643564 3` UTR Cpr66D + chr3L 8643629 intergenic Cpr66D + chr3L 8643694 intergenic Cpr66D + chr3L_8_8640001 chr3L_8640001 RAL-374 1019 chr3L 8690602 8690632 chr3L 8690849 8690899 11 257 2.0 2.5 2.2 3.4 297 chr3L 8690602 intergenic not near genes chr3L 8690750 intergenic not near genes chr3L 8690899 intergenic not near genes chr3L_11_8690001 chr3L_8690001 RAL-374 1020 chr3L 8791257 8791299 chr3L 8796697 8796739 I-element 11 5437 5.5 3.5 4.5 2.0 5482 chr3L 8791257 exon Fhos + chr3L 8793998 intron Fhos + chr3L 8796739 intron Fhos + chr3L_11_8790001 chr3L_8790001 RAL-374 1021 chr3L 8819059 8819078 chr3L 8819204 8819232 10 153 3.0 0.5 1.8 3.6 173 chr3L 8819059 intergenic not near genes chr3L 8819146 intergenic not near genes chr3L 8819232 intergenic not near genes chr3L_10_8815001 chr3L_8815001 RAL-374 1022 chr3L 8839726 8839747 chr3L 8839826 8839846 4 100 3.0 1.5 2.2 1.2 120 chr3L 8839726 intron dally + chr3L 8839786 intron dally + chr3L 8839846 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-374 1023 chr3L 8884407 8884426 chr3L 8884604 8884631 5 209 1.0 0.0 0.5 3.3 224 chr3L 8884407 intron dally + chr3L 8884519 intron dally + chr3L 8884631 intron dally + chr3L_5_8880001 chr3L_8880001 RAL-374 1024 chr3L 8912154 8912180 chr3L 8912262 8912288 7 107 1.0 0.0 0.5 4.7 134 chr3L 8912154 5` UTR mfr - chr3L 8912221 intron mfr - chr3L 8912288 intron mfr - chr3L_7_8910001 chr3L_8910001 RAL-374 1025 chr3L 8959379 8959394 chr3L 8959558 8959572 5 179 5.0 2.5 3.8 1.0 193 chr3L 8959379 intron CG13313 + chr3L 8959476 intron CG13313 + chr3L 8959572 intron CG13313 + chr3L_5_8955001 chr3L_8955001 RAL-374 1026 chr3L 9030416 9030445 chr3L 9030515 9030544 5 99 3.0 1.5 2.2 1.6 128 chr3L 9030416 intergenic not near genes chr3L 9030480 intergenic not near genes chr3L 9030544 intergenic not near genes chr3L_5_9030001 chr3L_9030001 RAL-374 1027 chr3L 9076912 9076956 chr3L 9084492 9084536 412 9 7580 3.5 3.5 3.5 2.0 7624 chr3L 9076912 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084536 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-374 1028 chr3L 9086888 9086933 chr3L 9086987 9087012 13 100 4.5 4.0 4.2 2.5 124 chr3L 9086888 exon Tequila + chr3L 9086950 exon Tequila + chr3L 9087012 exon Tequila + chr3L_13_9085001 chr3L_9085001 RAL-374 1029 chr3L 9130537 9130575 chr3L 9134318 9134356 412 6 3780 8.0 2.0 5.0 1.0 3819 chr3L 9130537 intergenic bol - chr3L 9132446 intergenic not near genes chr3L 9134356 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-374 1030 chr3L 9164685 9164714 chr3L 9166172 9166201 hobo 6 1487 3.0 0.0 1.5 2.4 1516 chr3L 9164685 intron Rdl - chr3L 9165443 intron Rdl - chr3L 9166201 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-374 1031 chr3L 9219229 9219269 chr3L 9219921 9219937 jockey 7 688 2.0 4.0 3.0 1.8 708 chr3L 9219229 intergenic not near genes chr3L 9219583 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-374 1032 chr3L 9344200 9344223 chr3L 9344298 9344321 4 98 0.0 10.5 5.2 0.6 121 chr3L 9344200 intron PGRP-LC + chr3L 9344260 intron PGRP-LC + chr3L 9344321 intron PGRP-LC + chr3L_4_9340001 chr3L_9340001 RAL-374 1033 chr3L 9443494 9443539 chr3L 9445299 9445350 S-element 11 1809 1.5 3.5 2.5 3.1 1856 chr3L 9443494 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445350 intron CG33926 + chr3L_11_9440001 chr3L_9440001 RAL-374 1034 chr3L 9498183 9498214 chr3L 9498280 9498311 4 97 5.5 2.5 4.0 0.8 128 chr3L 9498183 intron path - chr3L 9498247 intron path - chr3L 9498311 intron path - chr3L_4_9495001 chr3L_9495001 RAL-374 1035 chr3L 9513431 9513473 chr3L 9513538 9513580 7 107 0.0 2.0 1.0 3.5 149 chr3L 9513431 intergenic CG33702 - chr3L 9513506 intergenic CG33702 - chr3L 9513580 intergenic CG33702 - chr3L_7_9510001 chr3L_9510001 RAL-374 1036 chr3L 9541839 9541866 chr3L 9541944 9541960 4 101 1.0 4.0 2.5 1.1 121 chr3L 9541839 intergenic Ir67a - chr3L 9541900 intergenic Ir67a - chr3L 9541960 intergenic Ir67a - chr3L_4_9540001 chr3L_9540001 RAL-374 1037 chr3L 9571882 9571929 chr3L 9572250 9572297 jockey 5 368 1.5 3.0 2.2 1.6 415 chr3L 9571882 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572297 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-374 1038 chr3L 9575905 9575940 chr3L 9580995 9581038 jockey 5 5095 3.0 3.0 3.0 1.2 5133 chr3L 9575905 intron CG42673 + chr3L 9578472 intron CG42673 + chr3L 9581038 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-374 1039 chr3L 9646790 9646838 chr3L 9646908 9646954 8 118 4.0 1.5 2.8 2.1 164 chr3L 9646790 intron,intron fry -,CG33696 + chr3L 9646872 intron,intron fry -,CG33696 + chr3L 9646954 intron,intron fry -,CG33696 + chr3L_8_9645001 chr3L_9645001 RAL-374 1040 chr3L 9675112 9675164 chr3L 9675219 9675271 12 105 1.0 2.0 1.5 4.8 159 chr3L 9675112 intron fry - chr3L 9675192 intron fry - chr3L 9675271 intron fry - chr3L_12_9675001 chr3L_9675001 RAL-374 1041 chr3L 9895343 9895388 chr3L 9895443 9895488 16 96 5.5 3.5 4.5 2.9 145 chr3L 9895343 3` UTR CG6707 - chr3L 9895416 3` UTR CG6707 - chr3L 9895488 3` UTR CG6707 - chr3L_16_9895001 chr3L_9895001 RAL-374 1042 chr3L 9918875 9918910 chr3L 9918977 9919015 13 111 2.5 2.5 2.5 3.7 140 chr3L 9918875 intron CG34356 + chr3L 9918945 intron CG34356 + chr3L 9919015 intron CG34356 + chr3L_13_9915001 chr3L_9915001 RAL-374 1043 chr3L 9929653 9929695 chr3L 9938453 9938495 roo 13 8798 2.0 4.0 3.0 3.2 8842 chr3L 9929653 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938495 intron CG34356 + chr3L_13_9930001 chr3L_9930001 RAL-374 1044 chr3L 9951682 9951722 chr3L 9951787 9951828 13 106 2.0 4.0 3.0 3.2 146 chr3L 9951682 intron CG34356 + chr3L 9951755 intron CG34356 + chr3L 9951828 intron CG34356 + chr3L_13_9950001 chr3L_9950001 RAL-374 1045 chr3L 9952916 9952961 chr3L 9953020 9953064 5 104 1.5 0.0 0.8 2.8 148 chr3L 9952916 intron CG34356 + chr3L 9952990 intron CG34356 + chr3L 9953064 intron CG34356 + chr3L_5_9950001 chr3L_9950001 RAL-374 1046 chr3L 10003138 10003179 chr3L 10003254 10003296 6 117 1.0 2.5 1.8 2.1 158 chr3L 10003138 intron dpr6 + chr3L 10003217 intron dpr6 + chr3L 10003296 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-374 1047 chr3L 10032710 10032730 chr3L 10032819 10032838 7 107 3.0 0.0 1.5 2.8 128 chr3L 10032710 intron dpr6 + chr3L 10032774 intron dpr6 + chr3L 10032838 intron dpr6 + chr3L_7_10030001 chr3L_10030001 RAL-374 1048 chr3L 10049539 10049574 chr3L 10049639 10049670 6 99 4.5 3.0 3.8 1.2 131 chr3L 10049539 intron dpr6 + chr3L 10049604 intron dpr6 + chr3L 10049670 intron dpr6 + chr3L_6_10045001 chr3L_10045001 RAL-374 1049 chr3L 10060103 10060116 chr3L 10067696 10067715 17.6 4 7597 5.5 0.5 3.0 1.0 7612 chr3L 10060103 intron dpr6 + chr3L 10063909 intron dpr6 + chr3L 10067715 intron dpr6 + chr3L_4_10060001 chr3L_10060001 RAL-374 1050 chr3L 10182253 10182282 chr3L 10182337 10182387 7 99 2.0 4.0 3.0 1.8 134 chr3L 10182253 exon dpr10 - chr3L 10182320 5` UTR dpr10 - chr3L 10182387 5` UTR dpr10 - chr3L_7_10180001 chr3L_10180001 RAL-374 1051 chr3L 10269746 10269781 chr3L 10269850 10269884 6 104 1.5 1.5 1.5 2.4 138 chr3L 10269746 5` UTR CR45242 + chr3L 10269815 5` UTR CR45242 + chr3L 10269884 5` UTR CR45242 + chr3L_6_10265001 chr3L_10265001 RAL-374 1052 chr3L 10308732 10308772 chr3L 10308829 10308866 15 97 1.5 1.0 1.2 6.8 134 chr3L 10308732 intergenic not near genes chr3L 10308799 intergenic not near genes chr3L 10308866 intergenic not near genes chr3L_15_10305001 chr3L_10305001 RAL-374 1053 chr3L 10372365 10372389 chr3L 10372464 10372487 5 99 3.0 2.5 2.8 1.3 122 chr3L 10372365 intergenic not near genes chr3L 10372426 intergenic not near genes chr3L 10372487 intergenic not near genes chr3L_5_10370001 chr3L_10370001 RAL-374 1054 chr3L 10376113 10376123 chr3L 10376209 10376219 5 96 2.0 1.0 1.5 2.0 106 chr3L 10376113 intergenic not near genes chr3L 10376166 intergenic not near genes chr3L 10376219 intergenic not near genes chr3L_5_10375001 chr3L_10375001 RAL-374 1055 chr3L 10383215 10383241 chr3L 10383331 10383360 4 118 2.5 0.5 1.5 1.6 145 chr3L 10383215 intergenic not near genes chr3L 10383288 intergenic not near genes chr3L 10383360 intergenic not near genes chr3L_4_10380001 chr3L_10380001 RAL-374 1056 chr3L 10386370 10386418 chr3L 10386465 10386515 11 96 1.5 6.0 3.8 2.3 145 chr3L 10386370 intergenic CR45245 + chr3L 10386442 intergenic CR45245 + chr3L 10386515 5` UTR CR45245 + chr3L_11_10385001 chr3L_10385001 RAL-374 1057 chr3L 10414932 10414972 chr3L 10417323 10417364 Doc 11 2389 2.5 4.5 3.5 2.4 2432 chr3L 10414932 intergenic CG12362 + chr3L 10416148 intergenic not near genes chr3L 10417364 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-374 1058 chr3L 10417551 10417579 chr3L 10417648 10417675 5 95 4.0 3.0 3.5 1.1 124 chr3L 10417551 intergenic not near genes chr3L 10417613 intergenic not near genes chr3L 10417675 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-374 1059 chr3L 10417581 10417599 chr3L 10417643 10417656 5 77 2.5 4.0 3.2 1.2 75 chr3L 10417581 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417656 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-374 1060 chr3L 10584272 10584301 chr3L 10584379 10584408 7 107 3.0 4.0 3.5 1.6 136 chr3L 10584272 intron A2bp1 + chr3L 10584340 intron A2bp1 + chr3L 10584408 intron A2bp1 + chr3L_7_10580001 chr3L_10580001 RAL-374 1061 chr3L 10614754 10614797 chr3L 10614861 10614896 4 101 0.0 2.0 1.0 2.0 142 chr3L 10614754 intergenic not near genes chr3L 10614825 intergenic not near genes chr3L 10614896 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-374 1062 chr3L 10621841 10621877 chr3L 10621948 10621984 6 107 0.5 3.5 2.0 2.0 143 chr3L 10621841 intergenic not near genes chr3L 10621912 intergenic not near genes chr3L 10621984 intergenic not near genes chr3L_6_10620001 chr3L_10620001 RAL-374 1063 chr3L 10658071 10658212 chr3L 10658167 10658357 12 130 0.0 0.0 0.0 12.0 286 chr3L 10658071 intron CG32066 - chr3L 10658214 intron CG32066 - chr3L 10658357 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-374 1064 chr3L 10694905 10694931 chr3L 10695017 10695043 12 112 1.0 2.0 1.5 4.8 138 chr3L 10694905 intron NijA - chr3L 10694974 intron NijA - chr3L 10695043 exon NijA - chr3L_12_10690001 chr3L_10690001 RAL-374 1065 chr3L 10721975 10722012 chr3L 10722077 10722113 9 102 1.0 0.0 0.5 6.0 138 chr3L 10721975 intergenic not near genes chr3L 10722044 intergenic not near genes chr3L 10722113 intergenic not near genes chr3L_9_10720001 chr3L_10720001 RAL-374 1066 chr3L 10745119 10745169 chr3L 10745265 10745315 6 146 4.0 5.0 4.5 1.1 196 chr3L 10745119 intergenic not near genes chr3L 10745217 intergenic not near genes chr3L 10745315 intergenic not near genes chr3L_6_10745001 chr3L_10745001 RAL-374 1067 chr3L 10746328 10746383 chr3L 10746432 10746487 16 101 1.5 1.5 1.5 6.4 159 chr3L 10746328 intergenic not near genes chr3L 10746408 intergenic not near genes chr3L 10746487 intergenic not near genes chr3L_16_10745001 chr3L_10745001 RAL-374 1068 chr3L 11018555 11018577 chr3L 11018661 11018683 8 106 1.0 2.5 1.8 2.9 128 chr3L 11018555 intergenic not near genes chr3L 11018619 intergenic not near genes chr3L 11018683 intergenic not near genes chr3L_8_11015001 chr3L_11015001 RAL-374 1069 chr3L 11087043 11087088 chr3L 11088851 11088897 S-element 7 1809 0.5 2.0 1.2 3.2 1854 chr3L 11087043 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088897 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-374 1070 chr3L 11135513 11135805 chr3L 11135763 11135886 8 156 0.0 0.0 0.0 8.0 373 chr3L 11135513 intergenic CG14143 + chr3L 11135700 intergenic CG14143 +,CG32082 + chr3L 11135886 intergenic CG32082 +,CG14143 + chr3L_8_11135001 chr3L_11135001 RAL-374 1071 chr3L 11264454 11264493 chr3L 11271426 11271464 17.6 5 6972 3.0 4.5 3.8 1.0 7010 chr3L 11264454 intergenic not near genes chr3L 11267959 intergenic not near genes chr3L 11271464 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-374 1072 chr3L 11272631 11272681 chr3L 11273075 11273125 5 444 0.5 4.0 2.2 1.6 494 chr3L 11272631 intergenic not near genes chr3L 11272878 intergenic not near genes chr3L 11273125 intergenic not near genes chr3L_5_11270001 chr3L_11270001 RAL-374 1073 chr3L 11383964 11383979 chr3L 11384049 11384051 4 88 6.0 2.0 4.0 0.8 87 chr3L 11383964 intron CR42755 - chr3L 11384008 3` UTR CR42755 - chr3L 11384051 3` UTR CR42755 - chr3L_4_11380001 chr3L_11380001 RAL-374 1074 chr3L 11404804 11404852 chr3L 11404939 11404987 7 135 1.5 1.0 1.2 3.2 183 chr3L 11404804 intergenic not near genes chr3L 11404896 intergenic not near genes chr3L 11404987 intergenic not near genes chr3L_7_11400001 chr3L_11400001 RAL-374 1075 chr3L 11432885 11432936 chr3L 11432984 11433035 10 97 0.5 1.0 0.8 5.6 150 chr3L 11432885 intergenic not near genes chr3L 11432960 intergenic not near genes chr3L 11433035 intergenic not near genes chr3L_10_11430001 chr3L_11430001 RAL-374 1076 chr3L 11435547 11435589 chr3L 11435731 11435778 18 188 0.5 3.0 1.8 6.4 231 chr3L 11435547 intergenic CG6149 -,CR44548 + chr3L 11435662 5` UTR CR44548 + chr3L 11435778 5` UTR CR44548 + chr3L_18_11435001 chr3L_11435001 RAL-374 1077 chr3L 11474620 11474648 chr3L 11474729 11474755 7 108 3.0 0.5 1.8 2.5 135 chr3L 11474620 intergenic Vha16-2 + chr3L 11474688 intergenic Vha16-2 + chr3L 11474755 intergenic Vha16-2 + chr3L_7_11470001 chr3L_11470001 RAL-374 1078 chr3L 11564795 11564811 chr3L 11572407 11572413 412 5 7617 1.5 4.0 2.8 1.3 7618 chr3L 11564795 exon CG33267 + chr3L 11568604 intron CG33267 + chr3L 11572413 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-374 1079 chr3L 11579539 11579564 chr3L 11579665 11579689 5 126 7.5 1.5 4.5 0.9 150 chr3L 11579539 intergenic CG43390 - chr3L 11579614 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-374 1080 chr3L 11663734 11663756 chr3L 11663876 11663901 4 143 2.5 0.0 1.2 1.8 167 chr3L 11663734 intron CG32085 - chr3L 11663818 intron CG32085 - chr3L 11663901 intron CG32085 - chr3L_4_11660001 chr3L_11660001 RAL-374 1081 chr3L 11678075 11678095 chr3L 11678182 11678202 4 107 3.0 0.0 1.5 1.6 127 chr3L 11678075 intron CG32085 - chr3L 11678138 intron CG32085 - chr3L 11678202 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-374 1082 chr3L 11723067 11723114 chr3L 11727882 11727929 Doc 6 4815 0.5 2.5 1.5 2.4 4862 chr3L 11723067 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727929 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-374 1083 chr3L 11729657 11729704 chr3L 11729752 11729800 9 95 5.0 2.5 3.8 1.9 143 chr3L 11729657 exon CG32088 + chr3L 11729728 intron CG32088 + chr3L 11729800 exon CG32088 + chr3L_9_11725001 chr3L_11725001 RAL-374 1084 chr3L 7749470 7749472 chr3L 11777678 11777678 11 4028207 13.5 6.5 10.0 1.0 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_11_9760001 chr3L_9760001 RAL-374 1085 chr3L 9313026 9313027 chr3L 11777678 11777678 7 2464651 7.0 6.5 6.8 0.9 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_10545001 chr3L_10545001 RAL-374 1086 chr3L 11811454 11811473 chr3L 11811552 11811571 6 98 1.5 3.5 2.5 1.7 117 chr3L 11811454 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811571 exon CG42255 - chr3L_6_11810001 chr3L_11810001 RAL-374 1087 chr3L 11847155 11847174 chr3L 11847262 11847284 5 109 2.5 0.0 1.2 2.3 129 chr3L 11847155 intergenic CG12521 - chr3L 11847220 intergenic CG12521 - chr3L 11847284 intergenic CG12521 - chr3L_5_11845001 chr3L_11845001 RAL-374 1088 chr3L 11887243 11887261 chr3L 11887360 11887378 9 117 5.5 0.0 2.8 2.4 135 chr3L 11887243 intron CG44837 - chr3L 11887310 intron,3` UTR CG44837 -,CG5897 - chr3L 11887378 intron,3` UTR CG44837 -,CG5897 - chr3L_9_11885001 chr3L_11885001 RAL-374 1089 chr3L 11943476 11943520 chr3L 11943597 11943641 6 121 1.5 2.5 2.0 2.0 165 chr3L 11943476 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943641 3` UTR CG5883 - chr3L_6_11940001 chr3L_11940001 RAL-374 1090 chr3L 12013893 12013938 chr3L 12014004 12014040 16 110 3.0 1.0 2.0 5.3 147 chr3L 12013893 intron rols - chr3L 12013966 intron rols - chr3L 12014040 intron rols - chr3L_16_12010001 chr3L_12010001 RAL-374 1091 chr3L 12026411 12026458 chr3L 12026622 12026631 13 205 3.0 1.5 2.2 4.1 220 chr3L 12026411 intron rols - chr3L 12026521 intron rols - chr3L 12026631 intron rols - chr3L_13_12025001 chr3L_12025001 RAL-374 1092 chr3L 12034872 12034919 chr3L 12034969 12034971 5 88 1.0 0.5 0.8 2.8 99 chr3L 12034872 intron rols - chr3L 12034922 intron rols - chr3L 12034971 intron rols - chr3L_5_12030001 chr3L_12030001 RAL-374 1093 chr3L 12052700 12052736 chr3L 12052809 12052845 11 108 3.5 3.5 3.5 2.4 145 chr3L 12052700 intron rols - chr3L 12052772 intron rols - chr3L 12052845 intron rols - chr3L_11_12050001 chr3L_12050001 RAL-374 1094 chr3L 12075404 12075426 chr3L 12075513 12075535 9 109 5.5 0.0 2.8 2.4 131 chr3L 12075404 intron Sema-5c - chr3L 12075470 intron Sema-5c - chr3L 12075535 intron Sema-5c - chr3L_9_12075001 chr3L_12075001 RAL-374 1095 chr3L 12092386 12092402 chr3L 12092483 12092499 4 97 1.5 3.5 2.5 1.1 113 chr3L 12092386 intergenic not near genes chr3L 12092442 intergenic not near genes chr3L 12092499 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-374 1096 chr3L 12103898 12103910 chr3L 12103994 12104006 4 96 1.5 1.0 1.2 1.8 108 chr3L 12103898 intergenic not near genes chr3L 12103952 intergenic not near genes chr3L 12104006 intergenic not near genes chr3L_4_12100001 chr3L_12100001 RAL-374 1097 chr3L 12170775 12170817 chr3L 12170877 12170919 8 102 1.0 0.0 0.5 5.3 144 chr3L 12170775 intron Rh7 - chr3L 12170847 intron Rh7 - chr3L 12170919 intron Rh7 - chr3L_8_12170001 chr3L_12170001 RAL-374 1098 chr3L 12206050 12206079 chr3L 12206160 12206189 8 109 4.0 3.5 3.8 1.7 139 chr3L 12206050 intergenic CG5626 -,app - chr3L 12206120 intergenic CG5626 -,app - chr3L 12206189 intergenic app -,CG5626 - chr3L_8_12205001 chr3L_12205001 RAL-374 1099 chr3L 12223856 12223897 chr3L 12223953 12223994 5 93 2.5 3.5 3.0 1.2 138 chr3L 12223856 intron app - chr3L 12223925 intron app - chr3L 12223994 intron app - chr3L_5_12220001 chr3L_12220001 RAL-374 1100 chr3L 12304088 12304114 chr3L 12304171 12304208 5 90 1.5 3.0 2.2 1.6 120 chr3L 12304088 intergenic not near genes chr3L 12304148 intergenic not near genes chr3L 12304208 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-374 1101 chr3L 12327132 12327157 chr3L 12327245 12327289 5 125 3.0 2.0 2.5 1.4 157 chr3L 12327132 intergenic not near genes chr3L 12327210 intergenic not near genes chr3L 12327289 intergenic not near genes chr3L_5_12325001 chr3L_12325001 RAL-374 1102 chr3L 12378564 12378602 chr3L 12378752 12378791 9 189 4.0 2.5 3.2 2.1 227 chr3L 12378564 intron Ncc69 - chr3L 12378678 intron Ncc69 - chr3L 12378791 intron Ncc69 - chr3L_9_12375001 chr3L_12375001 RAL-374 1103 chr3L 12412714 12412923 chr3L 12412819 12413025 21 103 2.0 2.5 2.2 6.6 311 chr3L 12412714 intron CG32103 - chr3L 12412870 intron CG32103 - chr3L 12413025 intron CG32103 - chr3L_21_12410001 chr3L_12410001 RAL-374 1104 chr3L 12460308 12460325 chr3L 12460404 12460422 4 96 0.0 3.5 1.8 1.4 114 chr3L 12460308 intergenic not near genes chr3L 12460365 intergenic not near genes chr3L 12460422 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-374 1105 chr3L 12565350 12565391 chr3L 12565476 12565524 10 133 3.0 6.0 4.5 1.8 174 chr3L 12565350 intron sowah - chr3L 12565437 intron sowah - chr3L 12565524 intron sowah - chr3L_10_12565001 chr3L_12565001 RAL-374 1106 chr3L 12610976 12611026 chr3L 12611242 12611292 6 266 0.0 0.5 0.2 5.0 316 chr3L 12610976 intron caup + chr3L 12611134 intron caup + chr3L 12611292 intron caup + chr3L_6_12610001 chr3L_12610001 RAL-374 1107 chr3L 12626132 12626159 chr3L 12626261 12626288 6 129 2.5 1.0 1.8 2.1 156 chr3L 12626132 intergenic not near genes chr3L 12626210 intergenic not near genes chr3L 12626288 intergenic not near genes chr3L_6_12625001 chr3L_12625001 RAL-374 1108 chr3L 12647929 12647963 chr3L 12648024 12648059 5 92 3.0 0.5 1.8 1.8 130 chr3L 12647929 5` UTR CR32111 + chr3L 12647994 5` UTR CR32111 + chr3L 12648059 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-374 1109 chr3L 12656758 12656799 chr3L 12656882 12656904 6 116 3.5 4.0 3.8 1.2 146 chr3L 12656758 intergenic not near genes chr3L 12656831 intergenic not near genes chr3L 12656904 intergenic not near genes chr3L_6_12655001 chr3L_12655001 RAL-374 1110 chr3L 12706627 12706644 chr3L 12706768 12706791 8 146 3.5 0.0 1.8 2.9 164 chr3L 12706627 intron mirr + chr3L 12706709 intron mirr + chr3L 12706791 intron mirr + chr3L_8_12705001 chr3L_12705001 RAL-374 1111 chr3L 12801961 12802005 chr3L 12802057 12802101 10 93 2.0 4.0 3.0 2.5 140 chr3L 12801961 intron Atg1 - chr3L 12802031 intron Atg1 - chr3L 12802101 intron Atg1 - chr3L_10_12800001 chr3L_12800001 RAL-374 1112 chr3L 12874922 12874932 chr3L 12877234 12877244 jockey 5 2312 4.0 2.0 3.0 1.2 2322 chr3L 12874922 intergenic not near genes chr3L 12876083 intergenic not near genes chr3L 12877244 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-374 1113 chr3L 12874935 12874962 chr3L 12877229 12877274 jockey 10 2308 1.5 1.5 1.5 4.0 2339 chr3L 12874935 intergenic not near genes chr3L 12876104 intergenic not near genes chr3L 12877274 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-374 1114 chr3L 12894792 12894802 chr3L 12894887 12894900 4 96 6.5 3.0 4.8 0.7 108 chr3L 12894792 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894900 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-374 1115 chr3L 12949355 12949382 chr3L 12949570 12949597 4 215 2.5 2.5 2.5 1.1 242 chr3L 12949355 intergenic not near genes chr3L 12949476 intergenic not near genes chr3L 12949597 intergenic not near genes chr3L_4_12945001 chr3L_12945001 RAL-374 1116 chr3L 12949387 12949402 chr3L 12949569 12949614 9 207 2.5 2.5 2.5 2.6 227 chr3L 12949387 intergenic not near genes chr3L 12949500 intergenic not near genes chr3L 12949614 intergenic not near genes chr3L_9_12945001 chr3L_12945001 RAL-374 1117 chr3L 12955118 12955160 chr3L 12955214 12955255 10 96 1.5 2.5 2.0 3.3 137 chr3L 12955118 intergenic CG10752 - chr3L 12955186 intergenic not near genes chr3L 12955255 intergenic not near genes chr3L_10_12955001 chr3L_12955001 RAL-374 1118 chr3L 12957790 12957811 chr3L 12962292 12962313 copia 6 4500 5.0 10.0 7.5 0.7 4523 chr3L 12957790 intergenic not near genes chr3L 12960052 intergenic not near genes chr3L 12962313 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-374 1119 chr3L 13000993 13001034 chr3L 13001102 13001143 5 109 0.5 1.5 1.0 2.5 150 chr3L 13000993 intergenic not near genes chr3L 13001068 intergenic not near genes chr3L 13001143 intergenic not near genes chr3L_5_13000001 chr3L_13000001 RAL-374 1120 chr3L 13007682 13007721 chr3L 13007781 13007820 9 99 1.5 1.5 1.5 3.6 138 chr3L 13007682 exon CG11263 + chr3L 13007751 3` UTR CG11263 + chr3L 13007820 3` UTR CG11263 + chr3L_9_13005001 chr3L_13005001 RAL-374 1121 chr3L 13144098 13144139 chr3L 13144194 13144236 6 96 2.5 1.0 1.8 2.1 138 chr3L 13144098 intergenic not near genes chr3L 13144167 intergenic not near genes chr3L 13144236 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-374 1122 chr3L 13159273 13159295 chr3L 13159373 13159394 4 99 2.0 0.5 1.2 1.8 121 chr3L 13159273 intergenic not near genes chr3L 13159334 intergenic not near genes chr3L 13159394 intergenic not near genes chr3L_4_13155001 chr3L_13155001 RAL-374 1123 chr3L 13171371 13171396 chr3L 13171470 13171473 5 94 3.5 2.0 2.8 1.3 102 chr3L 13171371 intergenic not near genes chr3L 13171422 intergenic not near genes chr3L 13171473 intergenic not near genes chr3L_5_13170001 chr3L_13170001 RAL-374 1124 chr3L 13223215 13223243 chr3L 13223305 13223336 5 95 1.0 4.5 2.8 1.3 121 chr3L 13223215 intergenic not near genes chr3L 13223276 intergenic not near genes chr3L 13223336 intergenic not near genes chr3L_5_13220001 chr3L_13220001 RAL-374 1125 chr3L 13365627 13365651 chr3L 13365876 13365900 4 248 8.0 1.5 4.8 0.7 273 chr3L 13365627 intergenic not near genes chr3L 13365764 intergenic not near genes chr3L 13365900 intergenic not near genes chr3L_4_13365001 chr3L_13365001 RAL-374 1126 chr3L 13365656 13365672 chr3L 13365873 13365921 9 243 3.5 1.5 2.5 2.6 265 chr3L 13365656 intergenic not near genes chr3L 13365788 intergenic not near genes chr3L 13365921 intergenic not near genes chr3L_9_13365001 chr3L_13365001 RAL-374 1127 chr3L 13477013 13477035 chr3L 13477107 13477132 7 96 0.0 1.0 0.5 4.7 119 chr3L 13477013 intergenic not near genes chr3L 13477072 intergenic stv + chr3L 13477132 intergenic stv + chr3L_7_13475001 chr3L_13475001 RAL-374 1128 chr3L 13525136 13525186 chr3L 13532952 13532992 roo 9 7815 3.5 4.0 3.8 1.9 7856 chr3L 13525136 intergenic not near genes chr3L 13529064 intergenic not near genes chr3L 13532992 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-374 1129 chr3L 13535887 13535919 chr3L 13535983 13536015 7 95 1.0 1.5 1.2 3.2 128 chr3L 13535887 intergenic not near genes chr3L 13535951 intergenic not near genes chr3L 13536015 intergenic not near genes chr3L_7_13535001 chr3L_13535001 RAL-374 1130 chr3L 13629523 13629546 chr3L 13629654 13629677 5 129 2.5 5.0 3.8 1.0 154 chr3L 13629523 intron bru-3 - chr3L 13629600 intron bru-3 - chr3L 13629677 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-374 1131 chr3L 13740019 13740053 chr3L 13740130 13740165 5 110 0.5 3.0 1.8 1.8 146 chr3L 13740019 intron bru-3 - chr3L 13740092 intron bru-3 - chr3L 13740165 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-374 1132 chr3L 13766885 13766915 chr3L 13767003 13767033 8 118 4.0 2.5 3.2 1.9 148 chr3L 13766885 intron bru-3 - chr3L 13766959 intron bru-3 - chr3L 13767033 intron bru-3 - chr3L_8_13765001 chr3L_13765001 RAL-374 1133 chr3L 13804534 13804572 chr3L 13822840 13822868 roo 7 18304 1.5 4.5 3.0 1.8 18334 chr3L 13804534 intergenic not near genes chr3L 13813701 intergenic not near genes chr3L 13822868 intergenic not near genes chr3L_7_13810001 chr3L_13810001 RAL-374 1134 chr3L 13836329 13836359 chr3L 13836429 13836459 6 95 2.5 3.0 2.8 1.6 130 chr3L 13836329 intergenic not near genes chr3L 13836394 intergenic not near genes chr3L 13836459 intergenic not near genes chr3L_6_13835001 chr3L_13835001 RAL-374 1135 chr3L 13884359 13884386 chr3L 13884470 13884497 7 110 4.0 1.0 2.5 2.0 138 chr3L 13884359 intron dysc - chr3L 13884428 intron dysc - chr3L 13884497 intron dysc - chr3L_7_13880001 chr3L_13880001 RAL-374 1136 chr3L 13920406 13920423 chr3L 13920506 13920523 6 100 4.5 4.0 4.2 1.2 117 chr3L 13920406 intron Rgl - chr3L 13920464 intron Rgl - chr3L 13920523 intron Rgl - chr3L_6_13920001 chr3L_13920001 RAL-374 1137 chr3L 14194714 14194739 chr3L 14194809 14194835 4 96 1.0 0.5 0.8 2.2 121 chr3L 14194714 intron nuf + chr3L 14194774 intron nuf + chr3L 14194835 intron nuf + chr3L_4_14190001 chr3L_14190001 RAL-374 1138 chr3L 14199344 14199365 chr3L 14199455 14199476 8 108 4.5 5.5 5.0 1.3 132 chr3L 14199344 intron nuf + chr3L 14199410 intron nuf + chr3L 14199476 intron nuf + chr3L_8_14195001 chr3L_14195001 RAL-374 1139 chr3L 14211418 14211456 chr3L 14211516 14211554 6 98 0.5 2.5 1.5 2.4 136 chr3L 14211418 intron nuf + chr3L 14211486 intron nuf + chr3L 14211554 intron nuf + chr3L_6_14210001 chr3L_14210001 RAL-374 1140 chr3L 14234826 14234853 chr3L 14234943 14234969 4 116 3.0 3.0 3.0 1.0 143 chr3L 14234826 intergenic CG7924 +,CG34244 - chr3L 14234898 intergenic CG34244 -,CG7924 + chr3L 14234969 intergenic CG34244 -,CG7924 + chr3L_4_14230001 chr3L_14230001 RAL-374 1141 chr3L 14239973 14240002 chr3L 14240089 14240118 7 116 2.5 4.0 3.2 1.7 145 chr3L 14239973 intergenic not near genes chr3L 14240046 intergenic not near genes chr3L 14240118 intergenic not near genes chr3L_7_14240001 chr3L_14240001 RAL-374 1142 chr3L 14245574 14245587 chr3L 14245664 14245701 1360 6 108 4.0 1.5 2.8 1.6 127 chr3L 14245574 3` UTR CR44561 - chr3L 14245638 3` UTR CR44561 - chr3L 14245701 intergenic CR44561 -,CR44560 + chr3L_6_14245001 chr3L_14245001 RAL-374 1143 chr3L 14267354 14267371 chr3L 14271814 14271831 F-element 5 4458 2.5 3.5 3.0 1.2 4477 chr3L 14267354 intergenic not near genes chr3L 14269592 intergenic not near genes chr3L 14271831 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-374 1144 chr3L 14267375 14267398 chr3L 14271808 14271815 F-element 5 4428 1.5 3.5 2.5 1.4 4440 chr3L 14267375 intergenic not near genes chr3L 14269595 intergenic not near genes chr3L 14271815 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-374 1145 chr3L 14295966 14296005 chr3L 14296472 14296509 roo 6 506 1.0 2.5 1.8 2.1 543 chr3L 14295966 intron fz + chr3L 14296238 intron fz + chr3L 14296509 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-374 1146 chr3L 14296974 14297015 chr3L 14297079 14297120 8 101 1.5 3.5 2.5 2.3 146 chr3L 14296974 intron fz + chr3L 14297047 intron fz + chr3L 14297120 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-374 1147 chr3L 14303589 14303637 chr3L 14303702 14303748 6 112 1.0 3.0 2.0 2.0 159 chr3L 14303589 intron fz + chr3L 14303668 intron fz + chr3L 14303748 intron fz + chr3L_6_14300001 chr3L_14300001 RAL-374 1148 chr3L 14312026 14312046 chr3L 14316843 14316853 X-element 7 4827 1.0 4.0 2.5 2.0 4827 chr3L 14312026 exon fz + chr3L 14314440 intron fz + chr3L 14316853 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-374 1149 chr3L 14356509 14356549 chr3L 14356609 14356649 12 100 4.0 0.5 2.2 3.8 140 chr3L 14356509 intron fz + chr3L 14356579 intron fz + chr3L 14356649 intron fz + chr3L_12_14355001 chr3L_14355001 RAL-374 1150 chr3L 14368273 14368324 chr3L 14368377 14368427 8 103 1.5 1.0 1.2 3.6 154 chr3L 14368273 3` UTR fz + chr3L 14368350 3` UTR fz + chr3L 14368427 3` UTR fz + chr3L_8_14365001 chr3L_14365001 RAL-374 1151 chr3L 14411844 14411881 chr3L 14411943 14411979 4 98 5.0 1.5 3.2 1.0 135 chr3L 14411844 intron CG3919 + chr3L 14411912 intron CG3919 + chr3L 14411979 intron CG3919 + chr3L_4_14410001 chr3L_14410001 RAL-374 1152 chr3L 14440749 14440769 chr3L 14440854 14440874 4 105 1.5 2.0 1.8 1.4 125 chr3L 14440749 intron bbg - chr3L 14440812 intron bbg - chr3L 14440874 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-374 1153 chr3L 14442604 14442627 chr3L 14442912 14442937 4 310 1.5 1.0 1.2 1.8 333 chr3L 14442604 intron bbg - chr3L 14442770 intron bbg - chr3L 14442937 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-374 1154 chr3L 14468433 14468474 chr3L 14473659 14473699 copia 4 5224 1.0 1.5 1.2 1.8 5266 chr3L 14468433 intron bbg - chr3L 14471066 intron bbg - chr3L 14473699 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-374 1155 chr3L 14534743 14534766 chr3L 14534840 14534863 5 97 0.5 1.0 0.8 2.8 120 chr3L 14534743 intron bbg - chr3L 14534803 intron bbg - chr3L 14534863 intron bbg - chr3L_5_14530001 chr3L_14530001 RAL-374 1156 chr3L 14597343 14597366 chr3L 14597541 14597564 5 198 2.0 0.0 1.0 2.5 221 chr3L 14597343 intron HGTX - chr3L 14597454 intron HGTX - chr3L 14597564 intron HGTX - chr3L_5_14595001 chr3L_14595001 RAL-374 1157 chr3L 14702006 14702017 chr3L 14702105 14702114 4 98 0.0 1.0 0.5 2.7 108 chr3L 14702006 intron ome + chr3L 14702060 intron ome + chr3L 14702114 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-374 1158 chr3L 14721179 14721206 chr3L 14723032 14723067 Rt1c 4 1858 0.5 1.0 0.8 2.2 1888 chr3L 14721179 intron ome + chr3L 14722123 intron ome + chr3L 14723067 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-374 1159 chr3L 14724819 14724837 chr3L 14724923 14724941 4 104 0.0 5.0 2.5 1.1 122 chr3L 14724819 intron ome + chr3L 14724880 intron ome + chr3L 14724941 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-374 1160 chr3L 14891910 14891947 chr3L 14893644 14893687 9 1737 3.5 5.5 4.5 1.6 1777 chr3L 14891910 intergenic not near genes chr3L 14892798 intergenic not near genes chr3L 14893687 intergenic CG34245 - chr3L_9_14890001 chr3L_14890001 RAL-374 1161 chr3L 14933433 14933461 chr3L 14933535 14933563 6 102 0.0 3.0 1.5 2.4 130 chr3L 14933433 intron DCX-EMAP + chr3L 14933498 intron DCX-EMAP + chr3L 14933563 intron DCX-EMAP + chr3L_6_14930001 chr3L_14930001 RAL-374 1162 chr3L 15035527 15035575 chr3L 15036477 15036502 5 945 3.5 2.5 3.0 1.2 975 chr3L 15035527 intron Sytbeta - chr3L 15036014 intron Sytbeta - chr3L 15036502 intron Sytbeta - chr3L_5_15035001 chr3L_15035001 RAL-374 1163 chr3L 15048124 15048162 chr3L 15048468 15048508 8 344 13.0 18.0 15.5 0.5 384 chr3L 15048124 intron Sytbeta - chr3L 15048316 intron Sytbeta - chr3L 15048508 intron Sytbeta - chr3L_8_15045001 chr3L_15045001 RAL-374 1164 chr3L 15070078 15070126 chr3L 15070318 15070362 6 234 15.5 26.0 20.8 0.3 284 chr3L 15070078 exon cp309 - chr3L 15070220 exon cp309 - chr3L 15070362 exon cp309 - chr3L_6_15070001 chr3L_15070001 RAL-374 1165 chr3L 15079657 15079684 chr3L 15079772 15079800 7 116 2.0 1.5 1.8 2.5 143 chr3L 15079657 intron cp309 - chr3L 15079728 intron cp309 - chr3L 15079800 intron cp309 - chr3L_7_15075001 chr3L_15075001 RAL-374 1166 chr3L 15085027 15085071 chr3L 15086213 15086257 1360 5 1186 1.0 2.5 1.8 1.8 1230 chr3L 15085027 intron cp309 - chr3L 15085642 intron cp309 - chr3L 15086257 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-374 1167 chr3L 15193675 15193716 chr3L 15193864 15193905 10 189 4.0 4.0 4.0 2.0 230 chr3L 15193675 intergenic not near genes chr3L 15193790 intergenic not near genes chr3L 15193905 intergenic not near genes chr3L_10_15190001 chr3L_15190001 RAL-374 1168 chr3L 15209056 15209089 chr3L 15209162 15209195 9 106 2.0 1.5 1.8 3.2 139 chr3L 15209056 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209195 intergenic not near genes chr3L_9_15205001 chr3L_15205001 RAL-374 1169 chr3L 15257420 15257451 chr3L 15257653 15257683 5 233 2.0 1.5 1.8 1.8 263 chr3L 15257420 intergenic not near genes chr3L 15257552 intergenic not near genes chr3L 15257683 intergenic not near genes chr3L_5_15255001 chr3L_15255001 RAL-374 1170 chr3L 15284549 15284591 chr3L 15284648 15284689 7 98 3.5 2.0 2.8 1.8 140 chr3L 15284549 intergenic not near genes chr3L 15284619 intergenic not near genes chr3L 15284689 intergenic not near genes chr3L_7_15280001 chr3L_15280001 RAL-374 1171 chr3L 15295751 15295799 chr3L 15298614 15298662 gypsy5 8 2863 2.5 1.5 2.0 2.7 2911 chr3L 15295751 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298662 intergenic Best4 + chr3L_8_15295001 chr3L_15295001 RAL-374 1172 chr3L 15423753 15423784 chr3L 15426617 15426648 opus 8 2864 2.0 2.5 2.2 2.5 2895 chr3L 15423753 intergenic not near genes chr3L 15425200 intergenic not near genes chr3L 15426648 intergenic not near genes chr3L_8_15425001 chr3L_15425001 RAL-374 1173 chr3L 15444640 15444677 chr3L 15444746 15444778 6 110 4.0 5.0 4.5 1.1 138 chr3L 15444640 intergenic not near genes chr3L 15444709 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-374 1174 chr3L 15463444 15463494 chr3L 15463554 15463582 11 108 2.0 3.5 2.8 2.9 138 chr3L 15463444 intergenic not near genes chr3L 15463513 intergenic not near genes chr3L 15463582 intergenic not near genes chr3L_11_15460001 chr3L_15460001 RAL-374 1175 chr3L 15466024 15466139 chr3L 15466126 15466255 5 113 0.0 0.0 0.0 5.0 231 chr3L 15466024 intergenic not near genes chr3L 15466140 intergenic not near genes chr3L 15466255 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-374 1176 chr3L 15541599 15541650 chr3L 15541710 15541760 7 111 3.5 1.5 2.5 2.0 161 chr3L 15541599 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541760 intron CrebA + chr3L_7_15540001 chr3L_15540001 RAL-374 1177 chr3L 15541942 15541972 chr3L 15542056 15542086 4 114 2.0 4.0 3.0 1.0 144 chr3L 15541942 intron CrebA + chr3L 15542014 intron CrebA + chr3L 15542086 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-374 1178 chr3L 15633181 15633205 chr3L 15633281 15633305 4 100 2.0 2.0 2.0 1.3 124 chr3L 15633181 intron comm3 - chr3L 15633243 intron comm3 - chr3L 15633305 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-374 1179 chr3L 15744596 15744615 chr3L 15745054 15745072 7 456 20.0 8.0 14.0 0.5 476 chr3L 15744596 intergenic not near genes chr3L 15744834 intergenic not near genes chr3L 15745072 intergenic not near genes chr3L_7_15740001 chr3L_15740001 RAL-374 1180 chr3L 15857161 15857207 chr3L 15857325 15857370 4 163 0.5 0.0 0.2 3.3 209 chr3L 15857161 intron pHCl - chr3L 15857266 intron pHCl - chr3L 15857370 intron pHCl - chr3L_4_15855001 chr3L_15855001 RAL-374 1181 chr3L 15916828 15916861 chr3L 15916925 15916958 6 96 3.0 2.5 2.8 1.6 130 chr3L 15916828 intron sff - chr3L 15916893 intron sff - chr3L 15916958 intron sff - chr3L_6_15915001 chr3L_15915001 RAL-374 1182 chr3L 15929182 15929220 chr3L 15938349 15938387 roo 7 9166 2.5 1.5 2.0 2.3 9205 chr3L 15929182 intron Pka-C3 - chr3L 15933784 intron Pka-C3 - chr3L 15938387 intron Pka-C3 - chr3L_7_15930001 chr3L_15930001 RAL-374 1183 chr3L 15939848 15939881 chr3L 15939944 15939977 6 96 3.5 6.5 5.0 1.0 129 chr3L 15939848 intron Pka-C3 - chr3L 15939912 intron Pka-C3 - chr3L 15939977 intron Pka-C3 - chr3L_6_15935001 chr3L_15935001 RAL-374 1184 chr3L 16060473 16060500 chr3L 16060620 16060659 4 156 3.5 2.5 3.0 1.0 186 chr3L 16060473 intron Mbs + chr3L 16060566 intron Mbs + chr3L 16060659 intron Mbs + chr3L_4_16060001 chr3L_16060001 RAL-374 1185 chr3L 16070724 16070758 chr3L 16070821 16070855 10 96 2.5 3.5 3.0 2.5 131 chr3L 16070724 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070855 exon Mbs + chr3L_10_16070001 chr3L_16070001 RAL-374 1186 chr3L 16158789 16158832 chr3L 16158894 16158936 8 104 1.0 1.5 1.2 3.6 147 chr3L 16158789 intron CG5151 - chr3L 16158862 intron CG5151 - chr3L 16158936 intron CG5151 - chr3L_8_16155001 chr3L_16155001 RAL-374 1187 chr3L 16184110 16184119 chr3L 16188930 16188983 X-element 4 4853 0.5 1.0 0.8 2.2 4873 chr3L 16184110 intergenic not near genes chr3L 16186546 intergenic not near genes chr3L 16188983 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-374 1188 chr3L 16212790 16212825 chr3L 16212901 16212934 4 110 1.0 0.0 0.5 2.7 144 chr3L 16212790 intergenic CG13073 - chr3L 16212862 intergenic CG13073 - chr3L 16212934 intergenic CG13073 - chr3L_4_16210001 chr3L_16210001 RAL-374 1189 chr3L 16241889 16241928 chr3L 16241989 16242032 8 101 3.0 3.0 3.0 2.0 143 chr3L 16241889 intergenic not near genes chr3L 16241960 intergenic not near genes chr3L 16242032 intergenic not near genes chr3L_8_16240001 chr3L_16240001 RAL-374 1190 chr3L 16279066 16279096 chr3L 16279167 16279197 9 101 1.0 4.5 2.8 2.4 131 chr3L 16279066 exon CG13050 - chr3L 16279132 intron CG13050 - chr3L 16279197 intron CG13050 - chr3L_9_16275001 chr3L_16275001 RAL-374 1191 chr3L 16340252 16340289 chr3L 16340395 16340433 8 144 2.5 2.5 2.5 2.3 181 chr3L 16340252 intron CG4998 + chr3L 16340342 intron CG4998 + chr3L 16340433 intron CG4998 + chr3L_8_16340001 chr3L_16340001 RAL-374 1192 chr3L 16443838 16443878 chr3L 16446197 16446238 Doc 12 2360 4.0 3.5 3.8 2.5 2400 chr3L 16443838 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446238 intron,intron CG33158 +,dsx-c73A - chr3L_12_16445001 chr3L_16445001 RAL-374 1193 chr3L 16457529 16457542 chr3L 16457644 16457657 5 115 3.5 6.5 5.0 0.8 128 chr3L 16457529 intron CG33158 + chr3L 16457593 intron CG33158 + chr3L 16457657 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-374 1194 chr3L 16457887 16457927 chr3L 16457983 16458023 9 92 1.5 1.0 1.2 4.1 136 chr3L 16457887 intron CG33158 + chr3L 16457955 intron CG33158 + chr3L 16458023 intron CG33158 + chr3L_9_16455001 chr3L_16455001 RAL-374 1195 chr3L 16493959 16494011 chr3L 16494496 16494536 jockey 18 533 1.5 5.0 3.2 4.3 577 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494536 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_18_16490001 chr3L_16490001 RAL-374 1196 chr3L 16540037 16540086 chr3L 16540141 16540150 11 103 1.5 2.5 2.0 3.7 113 chr3L 16540037 intron CG43373 - chr3L 16540094 intron CG43373 - chr3L 16540150 intron CG43373 - chr3L_11_16540001 chr3L_16540001 RAL-374 1197 chr3L 16563222 16563236 chr3L 16563321 16563337 6 100 3.0 0.0 1.5 2.4 115 chr3L 16563222 intergenic Mipp1 - chr3L 16563280 intergenic Mipp1 - chr3L 16563337 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-374 1198 chr3L 16610666 16610695 chr3L 16610771 16610800 7 104 4.5 2.5 3.5 1.6 134 chr3L 16610666 3` UTR Su(P) - chr3L 16610733 3` UTR Su(P) - chr3L 16610800 exon Su(P) - chr3L_7_16610001 chr3L_16610001 RAL-374 1199 chr3L 16616491 16616541 chr3L 16621838 16621889 297 7 5347 2.5 2.5 2.5 2.0 5398 chr3L 16616491 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621889 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-374 1200 chr3L 16652666 16652705 chr3L 16652762 16652804 7 98 3.0 1.5 2.2 2.2 138 chr3L 16652666 intron Baldspot - chr3L 16652735 intron Baldspot - chr3L 16652804 intron Baldspot - chr3L_7_16650001 chr3L_16650001 RAL-374 1201 chr3L 16684013 16684039 chr3L 16689254 16689280 copia 4 5241 3.5 1.5 2.5 1.1 5267 chr3L 16684013 intron,intron Lasp -,CG43954 - chr3L 16686646 intron,intron Lasp -,CG43954 - chr3L 16689280 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-374 1202 chr3L 16746815 16746840 chr3L 16746918 16746923 4 96 3.5 3.0 3.2 1.0 108 chr3L 16746815 intergenic not near genes chr3L 16746869 intergenic not near genes chr3L 16746923 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-374 1203 chr3L 16757630 16757666 chr3L 16757738 16757751 5 104 3.5 2.5 3.0 1.2 121 chr3L 16757630 intergenic not near genes chr3L 16757690 intergenic not near genes chr3L 16757751 intergenic not near genes chr3L_5_16755001 chr3L_16755001 RAL-374 1204 chr3L 16772474 16772494 chr3L 16772583 16772604 4 109 4.0 0.5 2.2 1.2 130 chr3L 16772474 intron Nrt + chr3L 16772539 intron Nrt + chr3L 16772604 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-374 1205 chr3L 16786975 16786999 chr3L 16787069 16787071 6 91 0.0 5.0 2.5 1.7 96 chr3L 16786975 intergenic Int6 - chr3L 16787023 intergenic Int6 - chr3L 16787071 intergenic Int6 - chr3L_6_16785001 chr3L_16785001 RAL-374 1206 chr3L 16817334 16817362 chr3L 16817441 16817469 7 107 0.0 5.5 2.8 1.8 135 chr3L 16817334 intron,intron nudC +,CG13024 - chr3L 16817402 intron,intron nudC +,CG13024 - chr3L 16817469 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-374 1207 chr3L 16818738 16818779 chr3L 16818827 16818872 5 94 1.5 3.0 2.2 1.6 134 chr3L 16818738 intron,intron nudC +,CG13024 - chr3L 16818805 intron,intron nudC +,CG13024 - chr3L 16818872 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-374 1208 chr3L 16845001 16845042 chr3L 16845134 16845172 7 133 0.5 1.5 1.0 3.5 171 chr3L 16845001 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845086 intergenic CG9669 -,CG9715 + chr3L 16845172 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 RAL-374 1209 chr3L 16873323 16873363 chr3L 16873448 16873488 13 124 1.5 3.5 2.5 3.7 165 chr3L 16873323 intron Lmpt + chr3L 16873406 intron Lmpt + chr3L 16873488 intron Lmpt + chr3L_13_16870001 chr3L_16870001 RAL-374 1210 chr3L 16874518 16874572 chr3L 16874699 16874751 9 178 2.5 2.0 2.2 2.8 233 chr3L 16874518 intron Lmpt + chr3L 16874634 intron Lmpt + chr3L 16874751 intron Lmpt + chr3L_9_16870001 chr3L_16870001 RAL-374 1211 chr3L 16888794 16888839 chr3L 16889104 16889149 5 309 1.5 2.0 1.8 1.8 355 chr3L 16888794 intron Lmpt + chr3L 16888972 intron Lmpt + chr3L 16889149 intron Lmpt + chr3L_5_16885001 chr3L_16885001 RAL-374 1212 chr3L 17003774 17003787 chr3L 17003865 17003881 4 94 3.5 2.0 2.8 1.1 107 chr3L 17003774 intron CG3764 - chr3L 17003828 intron CG3764 - chr3L 17003881 intron CG3764 - chr3L_4_17000001 chr3L_17000001 RAL-374 1213 chr3L 17026770 17026815 chr3L 17026869 17026915 7 97 2.0 2.5 2.2 2.2 145 chr3L 17026770 exon Fit2 + chr3L 17026842 3` UTR Fit2 + chr3L 17026915 3` UTR Fit2 + chr3L_7_17025001 chr3L_17025001 RAL-374 1214 chr3L 17034916 17034965 chr3L 17035124 17035173 G2 8 208 0.5 3.0 1.8 2.9 257 chr3L 17034916 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035173 intergenic beg + chr3L_8_17035001 chr3L_17035001 RAL-374 1215 chr3L 17084985 17085036 chr3L 17094154 17094205 roo 9 9169 3.0 5.5 4.2 1.7 9220 chr3L 17084985 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094205 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-374 1216 chr3L 17120638 17120680 chr3L 17120734 17120776 9 96 3.5 3.5 3.5 2.0 138 chr3L 17120638 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120776 intron Rbp6 - chr3L_9_17120001 chr3L_17120001 RAL-374 1217 chr3L 17149144 17149165 chr3L 17149244 17149266 6 100 7.0 0.0 3.5 1.3 122 chr3L 17149144 intron Rbp6 - chr3L 17149205 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-374 1218 chr3L 17272229 17272249 chr3L 17272377 17272402 5 150 1.0 2.0 1.5 2.0 173 chr3L 17272229 intergenic not near genes chr3L 17272316 intergenic not near genes chr3L 17272402 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-374 1219 chr3L 17316434 17316475 chr3L 17316566 17316607 6 131 1.0 4.0 2.5 1.7 173 chr3L 17316434 intergenic not near genes chr3L 17316520 intergenic not near genes chr3L 17316607 intergenic not near genes chr3L_6_17315001 chr3L_17315001 RAL-374 1220 chr3L 17358024 17358056 chr3L 17358149 17358179 5 125 3.0 2.0 2.5 1.4 155 chr3L 17358024 3` UTR CG7692 + chr3L 17358102 intergenic CG7692 + chr3L 17358179 intergenic CG7692 + chr3L_5_17355001 chr3L_17355001 RAL-374 1221 chr3L 17367418 17367448 chr3L 17367531 17367562 6 114 3.0 1.0 2.0 2.0 144 chr3L 17367418 intergenic CR45688 +,Cad74A - chr3L 17367490 intergenic CR45688 +,Cad74A - chr3L 17367562 intergenic Cad74A -,CR45688 + chr3L_6_17365001 chr3L_17365001 RAL-374 1222 chr3L 17408899 17408921 chr3L 17408995 17409017 5 96 3.0 1.0 2.0 1.7 118 chr3L 17408899 intron blot - chr3L 17408958 intron blot - chr3L 17409017 intron blot - chr3L_5_17405001 chr3L_17405001 RAL-374 1223 chr3L 17492463 17492501 chr3L 17492789 17492830 10 327 2.5 2.5 2.5 2.9 367 chr3L 17492463 intron Oatp74D + chr3L 17492646 intron Oatp74D + chr3L 17492830 intron Oatp74D + chr3L_10_17490001 chr3L_17490001 RAL-374 1224 chr3L 17510749 17510765 chr3L 17510828 17510869 4 98 1.0 1.0 1.0 2.0 120 chr3L 17510749 exon Oatp74D + chr3L 17510809 intron Oatp74D + chr3L 17510869 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-374 1225 chr3L 17516977 17517008 chr3L 17524541 17524575 412 7 7574 2.5 5.0 3.8 1.5 7598 chr3L 17516977 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524575 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-374 1226 chr3L 17730830 17730875 chr3L 17738180 17738225 mdg1 7 7350 1.5 2.5 2.0 2.3 7395 chr3L 17730830 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738225 intron Ccn + chr3L_7_17730001 chr3L_17730001 RAL-374 1227 chr3L 17790606 17790626 chr3L 17790891 17790911 5 285 1.5 0.5 1.0 2.5 305 chr3L 17790606 intergenic CG42815 - chr3L 17790758 intergenic CG42815 - chr3L 17790911 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-374 1228 chr3L 17791101 17791156 chr3L 17791225 17791272 8 115 4.5 2.0 3.2 1.9 171 chr3L 17791101 3` UTR CG42815 - chr3L 17791186 exon CG42815 - chr3L 17791272 exon CG42815 - chr3L_8_17790001 chr3L_17790001 RAL-374 1229 chr3L 17836199 17836228 chr3L 17836294 17836325 4 96 2.0 3.0 2.5 1.1 126 chr3L 17836199 intron Grd + chr3L 17836262 intron Grd + chr3L 17836325 intron Grd + chr3L_4_17835001 chr3L_17835001 RAL-374 1230 chr3L 17918351 17918396 chr3L 17921174 17921215 opus 6 2820 3.0 0.5 1.8 2.1 2864 chr3L 17918351 intergenic not near genes chr3L 17919783 intergenic not near genes chr3L 17921215 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-374 1231 chr3L 18047696 18047738 chr3L 18056772 18056815 roo 9 9076 1.5 1.0 1.2 4.1 9119 chr3L 18047696 intron Eip75B - chr3L 18052256 intron Eip75B - chr3L 18056815 intron Eip75B - chr3L_9_18050001 chr3L_18050001 RAL-374 1232 chr3L 18092764 18092785 chr3L 18092898 18092920 5 135 4.5 0.0 2.2 1.6 156 chr3L 18092764 intron CG13698 - chr3L 18092842 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-374 1233 chr3L 18119611 18119674 chr3L 18119743 18119792 11 122 0.0 3.0 1.5 4.4 181 chr3L 18119611 intron CG7341 + chr3L 18119702 intron CG7341 + chr3L 18119792 5` UTR CG7341 + chr3L_11_18115001 chr3L_18115001 RAL-374 1234 chr3L 18124398 18124428 chr3L 18124502 18124532 5 104 1.5 1.0 1.2 2.3 134 chr3L 18124398 intergenic not near genes chr3L 18124465 intergenic not near genes chr3L 18124532 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-374 1235 chr3L 18150298 18150341 chr3L 18150415 18150457 8 116 3.5 2.5 3.0 2.0 159 chr3L 18150298 intron CG7330 + chr3L 18150378 intron CG7330 + chr3L 18150457 intron CG7330 + chr3L_8_18150001 chr3L_18150001 RAL-374 1236 chr3L 18152713 18152754 chr3L 18152844 18152884 6 131 3.0 1.0 2.0 2.0 171 chr3L 18152713 intron CG7330 + chr3L 18152798 intron CG7330 + chr3L 18152884 intron CG7330 + chr3L_6_18150001 chr3L_18150001 RAL-374 1237 chr3L 18203582 18203628 chr3L 18203697 18203731 6 105 4.0 0.0 2.0 2.0 149 chr3L 18203582 3` UTR CG7320 + chr3L 18203656 intergenic CG7320 + chr3L 18203731 intergenic CG7320 + chr3L_6_18200001 chr3L_18200001 RAL-374 1238 chr3L 18221094 18221125 chr3L 18221195 18221226 4 102 1.0 0.0 0.5 2.7 132 chr3L 18221094 intergenic not near genes chr3L 18221160 intergenic not near genes chr3L 18221226 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-374 1239 chr3L 18223146 18223185 chr3L 18223249 18223299 4 106 2.0 0.0 1.0 2.0 153 chr3L 18223146 intergenic not near genes chr3L 18223222 intergenic not near genes chr3L 18223299 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-374 1240 chr3L 18239862 18239897 chr3L 18239958 18239988 11 94 4.0 5.5 4.8 1.9 126 chr3L 18239862 intergenic not near genes chr3L 18239925 intergenic not near genes chr3L 18239988 intergenic not near genes chr3L_11_18235001 chr3L_18235001 RAL-374 1241 chr3L 18262451 18262484 chr3L 18262553 18262587 6 103 2.5 0.5 1.5 2.4 136 chr3L 18262451 intergenic not near genes chr3L 18262519 intergenic not near genes chr3L 18262587 intergenic not near genes chr3L_6_18260001 chr3L_18260001 RAL-374 1242 chr3L 18306932 18306986 chr3L 18307036 18307090 12 102 1.0 1.5 1.2 5.5 158 chr3L 18306932 intergenic not near genes chr3L 18307011 intergenic not near genes chr3L 18307090 intergenic not near genes chr3L_12_18305001 chr3L_18305001 RAL-374 1243 chr3L 18359576 18359628 chr3L 18359688 18359740 4 112 3.0 1.5 2.2 1.2 164 chr3L 18359576 intergenic not near genes chr3L 18359658 intergenic not near genes chr3L 18359740 intergenic not near genes chr3L_4_18355001 chr3L_18355001 RAL-374 1244 chr3L 18408713 18408754 chr3L 18408819 18408860 4 106 2.0 3.5 2.8 1.1 147 chr3L 18408713 intergenic not near genes chr3L 18408786 intergenic not near genes chr3L 18408860 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-374 1245 chr3L 9013691 9013691 chr3L 18417066 18417066 5 9403375 15.0 7.5 11.2 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-374 1246 chr3L 18456253 18456278 chr3L 18456361 18456386 7 108 4.0 1.5 2.8 1.8 133 chr3L 18456253 intergenic CR44670 - chr3L 18456320 intergenic CR44670 - chr3L 18456386 intergenic CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-374 1247 chr3L 18464493 18464496 chr3L 18464573 18464602 4 91 4.0 1.0 2.5 1.1 109 chr3L 18464493 intergenic not near genes chr3L 18464548 intergenic not near genes chr3L 18464602 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-374 1248 chr3L 18485670 18485711 chr3L 18485777 18485818 7 107 1.0 0.5 0.8 3.9 148 chr3L 18485670 3` UTR AstC-R2 - chr3L 18485744 3` UTR AstC-R2 - chr3L 18485818 3` UTR AstC-R2 - chr3L_7_18485001 chr3L_18485001 RAL-374 1249 chr3L 18506120 18506148 chr3L 18509603 18509631 F-element 6 3482 2.0 2.0 2.0 2.0 3511 chr3L 18506120 intergenic not near genes chr3L 18507876 intergenic not near genes chr3L 18509631 intergenic not near genes chr3L_6_18505001 chr3L_18505001 RAL-374 1250 chr3L 18546705 18546737 chr3L 18546801 18546803 7 103 2.0 3.0 2.5 2.0 98 chr3L 18546705 intergenic not near genes chr3L 18546754 intergenic not near genes chr3L 18546803 intergenic not near genes chr3L_7_18545001 chr3L_18545001 RAL-374 1251 chr3L 18567011 18567054 chr3L 18567114 18567160 6 105 4.0 1.5 2.8 1.6 149 chr3L 18567011 intron AstC-R1 + chr3L 18567086 intron AstC-R1 + chr3L 18567160 intron AstC-R1 + chr3L_6_18565001 chr3L_18565001 RAL-374 1252 chr3L 18579552 18579582 chr3L 18579700 18579730 7 147 2.5 3.5 3.0 1.8 178 chr3L 18579552 intergenic not near genes chr3L 18579641 intergenic not near genes chr3L 18579730 intergenic not near genes chr3L_7_18575001 chr3L_18575001 RAL-374 1253 chr3L 18593929 18593949 chr3L 18595929 18595949 Doc 5 2000 3.5 0.5 2.0 1.7 2020 chr3L 18593929 intergenic term - chr3L 18594939 intergenic not near genes chr3L 18595949 intergenic CR45389 + chr3L_5_18590001 chr3L_18590001 RAL-374 1254 chr3L 18616065 18616098 chr3L 18616151 18616194 9 93 2.5 3.0 2.8 2.4 129 chr3L 18616065 3` UTR,5` UTR CG13380 -,CG4174 - chr3L 18616130 3` UTR,5` UTR CG13380 -,CG4174 - chr3L 18616194 3` UTR,5` UTR CG13380 -,CG4174 - chr3L_9_18615001 chr3L_18615001 RAL-374 1255 chr3L 18638570 18638604 chr3L 18638684 18638718 6 114 1.5 7.5 4.5 1.1 148 chr3L 18638570 intron MYPT-75D + chr3L 18638644 intron MYPT-75D + chr3L 18638718 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-374 1256 chr3L 18710749 18710782 chr3L 18718720 18718754 Stalker2 4 7972 1.0 3.5 2.2 1.2 8005 chr3L 18710749 intergenic not near genes chr3L 18714752 intergenic not near genes chr3L 18718754 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-374 1257 chr3L 18721770 18721798 chr3L 18721878 18721907 5 110 2.0 2.5 2.2 1.6 137 chr3L 18721770 intergenic CG12477 - chr3L 18721838 intergenic CG12477 - chr3L 18721907 3` UTR CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-374 1258 chr3L 18725257 18725284 chr3L 18725580 18725608 7 324 5.0 4.5 4.8 1.2 351 chr3L 18725257 intergenic not near genes chr3L 18725432 intergenic not near genes chr3L 18725608 intergenic not near genes chr3L_7_18725001 chr3L_18725001 RAL-374 1259 chr3L 18772394 18772438 chr3L 18781095 18781134 roo 12 8700 4.0 3.0 3.5 2.7 8740 chr3L 18772394 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781134 intron ftz-f1 - chr3L_12_18775001 chr3L_18775001 RAL-374 1260 chr3L 18797292 18797325 chr3L 18797396 18797429 4 104 2.0 2.0 2.0 1.3 137 chr3L 18797292 intron ftz-f1 - chr3L 18797360 intron ftz-f1 - chr3L 18797429 intron ftz-f1 - chr3L_4_18795001 chr3L_18795001 RAL-374 1261 chr3L 18833774 18833803 chr3L 18834958 18834987 1360 4 1184 4.0 3.5 3.8 0.8 1213 chr3L 18833774 intron Indy - chr3L 18834380 intron Indy - chr3L 18834987 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-374 1262 chr3L 18933608 18933657 chr3L 18933722 18933770 6 114 1.5 2.5 2.0 2.0 162 chr3L 18933608 intron CG32204 - chr3L 18933689 intron CG32204 - chr3L 18933770 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-374 1263 chr3L 18935813 18935863 chr3L 18935922 18935972 9 109 1.5 0.5 1.0 4.5 159 chr3L 18935813 intron CG32204 - chr3L 18935892 intron CG32204 - chr3L 18935972 intron CG32204 - chr3L_9_18935001 chr3L_18935001 RAL-374 1264 chr3L 18964989 18965038 chr3L 18965106 18965157 9 111 3.0 2.5 2.8 2.4 168 chr3L 18964989 intergenic not near genes chr3L 18965073 intergenic not near genes chr3L 18965157 intergenic not near genes chr3L_9_18965001 chr3L_18965001 RAL-374 1265 chr3L 19008829 19008870 chr3L 19009187 19009228 jockey 8 358 1.5 3.0 2.2 2.5 399 chr3L 19008829 intron nkd - chr3L 19009028 intron nkd - chr3L 19009228 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-374 1266 chr3L 19015162 19015210 chr3L 19015266 19015309 6 103 0.0 1.5 0.8 3.3 147 chr3L 19015162 intron nkd - chr3L 19015236 intron nkd - chr3L 19015309 intron nkd - chr3L_6_19015001 chr3L_19015001 RAL-374 1267 chr3L 19029439 19029461 chr3L 19029560 19029566 4 117 4.5 8.0 6.2 0.6 127 chr3L 19029439 intron nkd - chr3L 19029502 intron nkd - chr3L 19029566 intron nkd - chr3L_4_19025001 chr3L_19025001 RAL-374 1268 chr3L 19029463 19029479 chr3L 19029557 19029590 5 108 2.0 7.5 4.8 0.9 127 chr3L 19029463 intron nkd - chr3L 19029526 intron nkd - chr3L 19029590 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-374 1269 chr3L 19083391 19083421 chr3L 19083493 19083524 6 98 4.0 3.0 3.5 1.3 133 chr3L 19083391 intron Mkp3 - chr3L 19083458 intron Mkp3 - chr3L 19083524 intron Mkp3 - chr3L_6_19080001 chr3L_19080001 RAL-374 1270 chr3L 19083423 19083427 chr3L 19083491 19083530 4 94 3.5 3.0 3.2 1.0 107 chr3L 19083423 intron Mkp3 - chr3L 19083476 intron Mkp3 - chr3L 19083530 intron Mkp3 - chr3L_4_19080001 chr3L_19080001 RAL-374 1271 chr3L 19117023 19117075 chr3L 19124487 19124542 mdg1 18 7462 3.5 3.0 3.2 4.3 7519 chr3L 19117023 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124542 intron CG14082 - chr3L_18_19120001 chr3L_19120001 RAL-374 1272 chr3L 19182367 19182417 chr3L 19182468 19182518 8 100 2.5 1.0 1.8 2.9 151 chr3L 19182367 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182518 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-374 1273 chr3L 19186928 19186968 chr3L 19187043 19187084 4 116 1.5 1.5 1.5 1.6 156 chr3L 19186928 intron fz2 - chr3L 19187006 intron fz2 - chr3L 19187084 intron fz2 - chr3L_4_19185001 chr3L_19185001 RAL-374 1274 chr3L 19208051 19208089 chr3L 19209434 19209483 Doc 9 1390 2.0 1.5 1.8 3.2 1432 chr3L 19208051 intron fz2 - chr3L 19208767 intron fz2 - chr3L 19209483 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-374 1275 chr3L 19223320 19223372 chr3L 19223443 19223493 4 117 2.0 0.5 1.2 1.8 173 chr3L 19223320 intron fz2 - chr3L 19223406 intron fz2 - chr3L 19223493 intron fz2 - chr3L_4_19220001 chr3L_19220001 RAL-374 1276 chr3L 19342556 19342595 chr3L 19342786 19342825 9 230 2.0 2.0 2.0 3.0 269 chr3L 19342556 3` UTR CG32206 - chr3L 19342690 3` UTR CG32206 - chr3L 19342825 3` UTR CG32206 - chr3L_9_19340001 chr3L_19340001 RAL-374 1277 chr3L 19377782 19377829 chr3L 19378488 19378533 17 703 2.0 2.0 2.0 5.7 751 chr3L 19377782 intron CG32206 - chr3L 19378158 intron CG32206 - chr3L 19378533 intron CG32206 - chr3L_17_19375001 chr3L_19375001 RAL-374 1278 chr3L 19404965 19404994 chr3L 19405062 19405091 7 96 1.0 2.0 1.5 2.8 126 chr3L 19404965 intron CG32206 - chr3L 19405028 intron CG32206 - chr3L 19405091 intron CG32206 - chr3L_7_19405001 chr3L_19405001 RAL-374 1279 chr3L 19430388 19430422 chr3L 19430475 19430519 6 96 2.5 2.0 2.2 1.9 131 chr3L 19430388 intergenic not near genes chr3L 19430454 intergenic not near genes chr3L 19430519 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-374 1280 chr3L 19527911 19527959 chr3L 19528010 19528024 7 94 2.5 1.5 2.0 2.3 113 chr3L 19527911 intergenic not near genes chr3L 19527968 intergenic not near genes chr3L 19528024 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-374 1281 chr3L 19703830 19703870 chr3L 19704001 19704044 11 173 3.5 2.5 3.0 2.8 214 chr3L 19703830 intron serp - chr3L 19703937 intron serp - chr3L 19704044 intron serp - chr3L_11_19700001 chr3L_19700001 RAL-374 1282 chr3L 19792344 19792361 chr3L 19792459 19792476 5 115 3.5 1.5 2.5 1.4 132 chr3L 19792344 intron,intron CG42637 -,Gyc76C - chr3L 19792410 intron,intron CG42637 -,Gyc76C - chr3L 19792476 intron,intron CG42637 -,Gyc76C - chr3L_5_19790001 chr3L_19790001 RAL-374 1283 chr3L 19848487 19848532 chr3L 19857697 19857699 roo 12 9202 2.5 2.0 2.2 3.8 9212 chr3L 19848487 intron Papss + chr3L 19853093 intron Papss + chr3L 19857699 intron Papss + chr3L_12_19850001 chr3L_19850001 RAL-374 1284 chr3L 19861821 19861845 chr3L 19863629 19863653 S-element 8 1808 4.0 4.0 4.0 1.6 1832 chr3L 19861821 5` UTR CR45433 + chr3L 19862737 intergenic not near genes chr3L 19863653 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-374 1285 chr3L 19961265 19961308 chr3L 19961495 19961539 9 230 2.0 4.0 3.0 2.2 274 chr3L 19961265 intron Ac76E + chr3L 19961402 intron Ac76E + chr3L 19961539 intron Ac76E + chr3L_9_19960001 chr3L_19960001 RAL-374 1286 chr3L 19962952 19962977 chr3L 19963049 19963075 7 98 0.5 6.0 3.2 1.7 123 chr3L 19962952 intron Ac76E + chr3L 19963014 intron Ac76E + chr3L 19963075 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-374 1287 chr3L 20034288 20034336 chr3L 20034729 20034776 8 440 0.5 6.5 3.5 1.8 488 chr3L 20034288 intergenic not near genes chr3L 20034532 intergenic not near genes chr3L 20034776 intergenic not near genes chr3L_8_20030001 chr3L_20030001 RAL-374 1288 chr3L 20055105 20055118 chr3L 20055463 20055486 5 369 2.5 1.5 2.0 1.7 381 chr3L 20055105 intergenic not near genes chr3L 20055296 intergenic not near genes chr3L 20055486 intergenic not near genes chr3L_5_20055001 chr3L_20055001 RAL-374 1289 chr3L 20113642 20113685 chr3L 20122918 20122962 roo 8 9277 1.5 1.0 1.2 3.6 9320 chr3L 20113642 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122962 intergenic not near genes chr3L_8_20115001 chr3L_20115001 RAL-374 1290 chr3L 20157951 20157998 chr3L 20158069 20158115 9 118 1.0 3.5 2.2 2.8 164 chr3L 20157951 intron CG42674 - chr3L 20158033 intron CG42674 - chr3L 20158115 intron CG42674 - chr3L_9_20155001 chr3L_20155001 RAL-374 1291 chr3L 20257314 20257353 chr3L 20258454 20258493 pogo 10 1140 3.0 1.0 2.0 3.3 1179 chr3L 20257314 intron rdgC + chr3L 20257904 intron rdgC + chr3L 20258493 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-374 1292 chr3L 20283659 20283707 chr3L 20283763 20283792 12 100 2.5 3.5 3.0 3.0 133 chr3L 20283659 intron gogo - chr3L 20283726 intron gogo - chr3L 20283792 intron gogo - chr3L_12_20280001 chr3L_20280001 RAL-374 1293 chr3L 20444113 20444142 chr3L 20444220 20444249 7 107 4.0 3.0 3.5 1.6 136 chr3L 20444113 intron CG5910 + chr3L 20444181 intron CG5910 + chr3L 20444249 intron CG5910 + chr3L_7_20440001 chr3L_20440001 RAL-374 1294 chr3L 20476735 20476763 chr3L 20484354 20484381 springer 8 7619 3.5 3.0 3.2 1.9 7646 chr3L 20476735 3` UTR isoQC + chr3L 20480558 intergenic not near genes chr3L 20484381 3` UTR ZnT77C - chr3L_8_20480001 chr3L_20480001 RAL-374 1295 chr3L 20487642 20487669 chr3L 20488113 20488133 INE-1 12 470 5.0 0.5 2.8 3.2 491 chr3L 20487642 intron ZnT77C - chr3L 20487888 intron ZnT77C - chr3L 20488133 exon ZnT77C - chr3L_12_20485001 chr3L_20485001 RAL-374 1296 chr3L 20563791 20563826 chr3L 20563896 20563931 7 103 1.5 4.0 2.8 1.8 140 chr3L 20563791 intergenic not near genes chr3L 20563861 intergenic not near genes chr3L 20563931 intergenic not near genes chr3L_7_20560001 chr3L_20560001 RAL-374 1297 chr3L 20603416 20603450 chr3L 20603527 20603561 7 111 2.0 2.5 2.2 2.2 145 chr3L 20603416 intron knrl - chr3L 20603488 intron knrl - chr3L 20603561 intron knrl - chr3L_7_20600001 chr3L_20600001 RAL-374 1298 chr3L 20624607 20624643 chr3L 20624707 20624749 5 105 2.5 0.0 1.2 2.3 142 chr3L 20624607 intergenic CR44684 - chr3L 20624678 intergenic CR44684 - chr3L 20624749 intergenic CR44684 - chr3L_5_20620001 chr3L_20620001 RAL-374 1299 chr3L 20668430 20668483 chr3L 20668526 20668576 15 95 1.5 2.5 2.0 5.0 146 chr3L 20668430 intergenic not near genes chr3L 20668503 intergenic not near genes chr3L 20668576 intergenic not near genes chr3L_15_20665001 chr3L_20665001 RAL-374 1300 chr3L 20710756 20710782 chr3L 20710852 20710879 5 92 3.5 1.5 2.5 1.4 123 chr3L 20710756 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710879 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-374 1301 chr3L 20733794 20733823 chr3L 20733896 20733920 5 103 2.0 2.5 2.2 1.6 126 chr3L 20733794 intron CG13252 + chr3L 20733857 intron CG13252 + chr3L 20733920 intron CG13252 + chr3L_5_20730001 chr3L_20730001 RAL-374 1302 chr3L 20821270 20821310 chr3L 20824901 20824920 NOF 9 3628 2.0 4.0 3.0 2.2 3650 chr3L 20821270 intron Pka-R1 + chr3L 20823095 intron Pka-R1 + chr3L 20824920 intron Pka-R1 + chr3L_9_20820001 chr3L_20820001 RAL-374 1303 chr3L 20849253 20849298 chr3L 20849352 20849397 10 99 4.5 3.0 3.8 2.1 144 chr3L 20849253 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849397 intron CG32432 - chr3L_10_20845001 chr3L_20845001 RAL-374 1304 chr3L 20863585 20863608 chr3L 20863796 20863819 8 211 6.5 3.0 4.8 1.4 234 chr3L 20863585 intron CG32432 - chr3L 20863702 intron CG32432 - chr3L 20863819 intron CG32432 - chr3L_8_20860001 chr3L_20860001 RAL-374 1305 chr3L 20864635 20864673 chr3L 20864736 20864737 8 92 2.0 3.0 2.5 2.3 102 chr3L 20864635 intron CG32432 - chr3L 20864686 intron CG32432 - chr3L 20864737 intron CG32432 - chr3L_8_20860001 chr3L_20860001 RAL-374 1306 chr3L 20896906 20896921 chr3L 20897005 20897020 4 98 3.0 1.5 2.2 1.2 114 chr3L 20896906 3` UTR Sfp77F - chr3L 20896963 3` UTR Sfp77F - chr3L 20897020 3` UTR Sfp77F - chr3L_4_20895001 chr3L_20895001 RAL-374 1307 chr3L 20913743 20913778 chr3L 20913831 20913876 8 93 4.0 3.5 3.8 1.7 133 chr3L 20913743 intergenic CR43930 - chr3L 20913810 intergenic CR43930 - chr3L 20913876 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-374 1308 chr3L 20917070 20917121 chr3L 20917167 20917216 11 96 3.0 5.0 4.0 2.2 146 chr3L 20917070 intergenic not near genes chr3L 20917143 intergenic not near genes chr3L 20917216 intergenic not near genes chr3L_11_20915001 chr3L_20915001 RAL-374 1309 chr3L 20931783 20931812 chr3L 20931886 20931915 7 103 3.5 0.0 1.8 2.5 132 chr3L 20931783 intron fng - chr3L 20931849 intron fng - chr3L 20931915 intron fng - chr3L_7_20930001 chr3L_20930001 RAL-374 1310 chr3L 20948646 20948697 chr3L 20948757 20948775 8 106 2.0 3.0 2.5 2.3 129 chr3L 20948646 intron fng - chr3L 20948710 intron fng - chr3L 20948775 intron fng - chr3L_8_20945001 chr3L_20945001 RAL-374 1311 chr3L 21010639 21010679 chr3L 21010734 21010780 4 100 2.0 0.5 1.2 1.8 141 chr3L 21010639 intron skd - chr3L 21010710 intron skd - chr3L 21010780 intron skd - chr3L_4_21010001 chr3L_21010001 RAL-374 1312 chr3L 21035442 21035482 chr3L 21035539 21035578 8 95 0.5 1.0 0.8 4.4 136 chr3L 21035442 intron siz + chr3L 21035510 intron siz + chr3L 21035578 intron siz + chr3L_8_21035001 chr3L_21035001 RAL-374 1313 chr3L 21057123 21057154 chr3L 21057359 21057363 5 230 2.0 2.5 2.2 1.6 240 chr3L 21057123 intron siz + chr3L 21057243 intron siz + chr3L 21057363 intron siz + chr3L_5_21055001 chr3L_21055001 RAL-374 1314 chr3L 21067936 21067956 chr3L 21068036 21068056 7 100 4.0 2.5 3.2 1.7 120 chr3L 21067936 intron siz + chr3L 21067996 intron siz + chr3L 21068056 intron siz + chr3L_7_21065001 chr3L_21065001 RAL-374 1315 chr3L 21082189 21082240 chr3L 21082287 21082338 11 98 1.0 2.0 1.5 4.4 149 chr3L 21082189 intron ko - chr3L 21082264 intron ko - chr3L 21082338 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-374 1316 chr3L 21085561 21085614 chr3L 21085969 21086022 13 408 1.0 1.5 1.2 5.9 461 chr3L 21085561 intron ko - chr3L 21085792 intron ko - chr3L 21086022 intron ko - chr3L_13_21085001 chr3L_21085001 RAL-374 1317 chr3L 21125835 21125875 chr3L 21125931 21125955 6 90 1.5 2.5 2.0 2.0 120 chr3L 21125835 intron ko - chr3L 21125895 intron ko - chr3L 21125955 intron ko - chr3L_6_21125001 chr3L_21125001 RAL-374 1318 chr3L 21151853 21151897 chr3L 21156957 21157001 flea 6 5104 3.5 3.5 3.5 1.3 5148 chr3L 21151853 intron Ac78C - chr3L 21154427 intron Ac78C - chr3L 21157001 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-374 1319 chr3L 21259576 21259626 chr3L 21259672 21259721 5 89 1.5 3.0 2.2 1.6 145 chr3L 21259576 intron Eip78C + chr3L 21259648 intron Eip78C + chr3L 21259721 intron Eip78C + chr3L_5_21255001 chr3L_21255001 RAL-374 1320 chr3L 21266308 21266364 chr3L 21266408 21266448 8 98 1.0 2.5 1.8 2.9 140 chr3L 21266308 3` UTR Eip78C + chr3L 21266378 3` UTR Eip78C + chr3L 21266448 3` UTR Eip78C + chr3L_8_21265001 chr3L_21265001 RAL-374 1321 chr3L 21294825 21294862 chr3L 21294936 21294973 8 111 0.5 1.0 0.8 4.4 148 chr3L 21294825 5` UTR Cpr78Cb + chr3L 21294899 5` UTR Cpr78Cb + chr3L 21294973 5` UTR Cpr78Cb + chr3L_8_21290001 chr3L_21290001 RAL-374 1322 chr3L 21303693 21303739 chr3L 21303800 21303846 12 106 3.5 3.5 3.5 2.7 153 chr3L 21303693 intron CG11309 - chr3L 21303770 intron CG11309 - chr3L 21303846 intron CG11309 - chr3L_12_21300001 chr3L_21300001 RAL-374 1323 chr3L 21306134 21306179 chr3L 21315313 21315344 roo 9 9177 4.0 4.5 4.2 1.7 9210 chr3L 21306134 3` UTR CG7632 + chr3L 21310739 intron Pc - chr3L 21315344 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-374 1324 chr3L 21361708 21361747 chr3L 21362680 21362721 G2 9 973 4.0 4.5 4.2 1.7 1013 chr3L 21361708 intergenic CG32440 + chr3L 21362214 intergenic not near genes chr3L 21362721 intergenic not near genes chr3L_9_21360001 chr3L_21360001 RAL-374 1325 chr3L 21406978 21407015 chr3L 21407077 21407106 8 97 5.5 3.0 4.2 1.5 128 chr3L 21406978 intron rgn + chr3L 21407042 intron rgn + chr3L 21407106 intron rgn + chr3L_8_21405001 chr3L_21405001 RAL-374 1326 chr3L 21639181 21639219 chr3L 21639279 21639317 6 98 4.5 4.0 4.2 1.2 136 chr3L 21639181 intergenic CG32444 +,CG32445 + chr3L 21639249 intergenic CG32445 +,CG32444 + chr3L 21639317 intergenic CG32445 +,CG32444 + chr3L_6_21635001 chr3L_21635001 RAL-374 1327 chr3L 21769591 21769629 chr3L 21769685 21769719 9 84 2.0 0.5 1.2 4.1 128 chr3L 21769591 intron,intron Syn1 -,CG42689 + chr3L 21769655 intron,intron Syn1 -,CG42689 + chr3L 21769719 intron,intron Syn1 -,CG42689 + chr3L_9_21765001 chr3L_21765001 RAL-374 1328 chr3L 21771883 21771903 chr3L 21772012 21772034 7 130 7.5 4.0 5.8 1.0 151 chr3L 21771883 intron CG42689 + chr3L 21771958 intron CG42689 + chr3L 21772034 intron CG42689 + chr3L_7_21770001 chr3L_21770001 RAL-374 1329 chr3L 21849480 21849529 chr3L 21849581 21849631 10 101 0.5 1.5 1.0 5.0 151 chr3L 21849480 intron mub + chr3L 21849556 intron mub + chr3L 21849631 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-374 1330 chr3L 21874980 21875019 chr3L 21875157 21875196 4 177 1.0 1.0 1.0 2.0 216 chr3L 21874980 intron mub + chr3L 21875088 intron mub + chr3L 21875196 intron mub + chr3L_4_21875001 chr3L_21875001 RAL-374 1331 chr3L 21901016 21901042 chr3L 21901123 21901153 8 111 1.0 4.0 2.5 2.3 137 chr3L 21901016 intron mub + chr3L 21901084 intron mub + chr3L 21901153 intron mub + chr3L_8_21900001 chr3L_21900001 RAL-374 1332 chr3L 22001336 22001363 chr3L 22001423 22001443 6 93 1.0 2.0 1.5 2.4 107 chr3L 22001336 intergenic not near genes chr3L 22001390 intergenic not near genes chr3L 22001443 intergenic not near genes chr3L_6_22000001 chr3L_22000001 RAL-374 1333 chr3L 22041496 22041535 chr3L 22041658 22041697 8 159 0.5 3.0 1.8 2.9 201 chr3L 22041496 intron Oct-TyrR + chr3L 22041596 intron Oct-TyrR + chr3L 22041697 intron Oct-TyrR + chr3L_8_22040001 chr3L_22040001 RAL-374 1334 chr3L 22058275 22058309 chr3L 22058571 22058604 5 296 4.0 3.5 3.8 1.0 329 chr3L 22058275 intron Oct-TyrR + chr3L 22058440 intron Oct-TyrR + chr3L 22058604 intron Oct-TyrR + chr3L_5_22055001 chr3L_22055001 RAL-374 1335 chr3L 22058311 22058324 chr3L 22058570 22058621 5 288 2.5 3.0 2.8 1.3 310 chr3L 22058311 intron Oct-TyrR + chr3L 22058466 intron Oct-TyrR + chr3L 22058621 intron Oct-TyrR + chr3L_5_22055001 chr3L_22055001 RAL-374 1336 chr3L 22092794 22092822 chr3L 22092915 22092943 8 119 4.0 2.0 3.0 2.0 149 chr3L 22092794 intergenic not near genes chr3L 22092868 intergenic not near genes chr3L 22092943 intergenic not near genes chr3L_8_22090001 chr3L_22090001 RAL-374 1337 chr3L 22099666 22099701 chr3L 22105869 22105907 3S18 9 6203 5.5 4.0 4.8 1.6 6241 chr3L 22099666 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105907 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-374 1338 chr3L 22124794 22124839 chr3L 22124897 22124942 12 99 2.5 5.5 4.0 2.4 148 chr3L 22124794 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124942 intergenic not near genes chr3L_12_22120001 chr3L_22120001 RAL-374 1339 chr3L 22130480 22130521 chr3L 22130646 22130686 7 162 1.5 2.0 1.8 2.5 206 chr3L 22130480 intergenic not near genes chr3L 22130583 intergenic not near genes chr3L 22130686 intergenic not near genes chr3L_7_22130001 chr3L_22130001 RAL-374 1340 chr3L 22169451 22169480 chr3L 22169563 22169593 5 113 2.0 5.0 3.5 1.1 142 chr3L 22169451 intron olf413 + chr3L 22169522 intron olf413 + chr3L 22169593 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-374 1341 chr3L 22443878 22443915 chr3L 22444315 22444351 11 436 0.5 2.5 1.5 4.4 473 chr3L 22443878 intergenic not near genes chr3L 22444114 intergenic not near genes chr3L 22444351 intergenic not near genes chr3L_11_22440001 chr3L_22440001 RAL-374 1342 chr3L 22522683 22522728 chr3L 22522780 22522825 8 93 2.5 2.0 2.2 2.5 142 chr3L 22522683 intergenic not near genes chr3L 22522754 intergenic not near genes chr3L 22522825 intergenic not near genes chr3L_8_22520001 chr3L_22520001 RAL-374 1343 chr3L 22555756 22555775 chr3L 22563246 22563260 blood 4 7488 2.5 2.0 2.2 1.2 7504 chr3L 22555756 intergenic not near genes chr3L 22559508 intergenic not near genes chr3L 22563260 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-374 1344 chr3L 22555782 22555801 chr3L 22563240 22563271 blood 5 7479 1.0 1.5 1.2 2.3 7489 chr3L 22555782 intergenic not near genes chr3L 22559526 intergenic not near genes chr3L 22563271 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-374 1345 chr3L 22617179 22617222 chr3L 22624646 22624694 blood 14 7466 3.0 3.0 3.0 3.5 7515 chr3L 22617179 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624694 intron CG14459 - chr3L_14_22620001 chr3L_22620001 RAL-374 1346 chr3L 22761383 22761415 chr3L 22766816 22766869 Ivk 14 5452 2.5 4.5 3.5 3.1 5486 chr3L 22761383 intron SPoCk + chr3L 22764126 intron SPoCk + chr3L 22766869 intron SPoCk + chr3L_14_22760001 chr3L_22760001 RAL-374 1347 chr3L 22786082 22786110 chr3L 22788499 22788527 5 2418 16.0 12.0 14.0 0.3 2445 chr3L 22786082 3` UTR SPoCk + chr3L 22787304 3` UTR SPoCk + chr3L 22788527 exon CG14448 + chr3L_5_22785001 chr3L_22785001 RAL-374 1348 chr3L 22853443 22853713 chr3L 22853550 22853819 14 106 2.0 5.5 3.8 2.9 376 chr3L 22853443 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853631 5` UTR CR43426 + chr3L 22853819 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-374 1349 chr3L 22865969 22866006 chr3L 22867122 22867159 Doc 6 1152 6.5 2.0 4.2 1.2 1190 chr3L 22865969 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867159 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-374 1350 chr3L 22909009 22909047 chr3L 22909118 22909158 9 103 3.5 4.0 3.8 1.9 149 chr3L 22909009 intergenic CR45661 + chr3L 22909084 intergenic CR45661 + chr3L 22909158 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-374 1351 chr3L 22949178 22949214 chr3L 22949286 22949322 10 108 4.5 2.0 3.2 2.4 144 chr3L 22949178 intron Mes2 + chr3L 22949250 intron Mes2 + chr3L 22949322 intron Mes2 + chr3L_10_22945001 chr3L_22945001 RAL-374 1352 chr3L 22989850 22989869 chr3L 22996844 22996862 297 6 6992 5.5 2.5 4.0 1.2 7012 chr3L 22989850 intergenic not near genes chr3L 22993356 intergenic not near genes chr3L 22996862 intergenic not near genes chr3L_6_22990001 chr3L_22990001 RAL-374 1353 chr3L 23011129 23011179 chr3L 23011223 23011276 7 96 2.0 5.0 3.5 1.6 147 chr3L 23011129 intron nrm + chr3L 23011202 intron nrm + chr3L 23011276 intron nrm + chr3L_7_23010001 chr3L_23010001 RAL-374 1354 chr3L 23875529 23875553 chr3L 23875607 23875654 6 81 2.5 3.0 2.8 1.6 125 chr3L 23875529 intron CG40470 - chr3L 23875592 intron CG40470 - chr3L 23875654 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-374 1355 chr3L 24012414 24012433 chr3L 24020775 24020793 roo 5 8360 2.5 1.5 2.0 1.7 8379 chr3L 24012414 intergenic not near genes chr3L 24016604 intergenic not near genes chr3L 24020793 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-374 1356 chr3L 24290475 24290517 chr3L 24290838 24290859 4 356 1.0 1.0 1.0 2.0 384 chr3L 24290475 intron,3` UTR Snap25 +,CR45159 - chr3L 24290667 intron,3` UTR Snap25 +,CR45159 - chr3L 24290859 intron,3` UTR Snap25 +,CR45159 - chr3L_4_24290001 chr3L_24290001 RAL-374 1357 chr3L 25635700 25635742 chr3L 25635992 25636034 10 292 4.0 4.5 4.2 1.9 334 chr3L 25635700 intron CG41343 - chr3L 25635867 intron CG41343 - chr3L 25636034 intron CG41343 - chr3L_10_25635001 chr3L_25635001 RAL-374 1358 chr3L 23289004 23289040 chr3L 25843665 25843703 5 2554663 20.0 12.5 16.2 0.3 2554699 chr3L 23289004 intergenic not near genes chr3L 24566354 intergenic not near genes chr3L 25843703 intron CG40178 - chr3L_5_24565001 chr3L_24565001 RAL-374 1359 chr3L 26008743 26008790 chr3L 26008910 26008955 7 166 1.0 1.0 1.0 3.5 212 chr3L 26008743 intron CG40178 - chr3L 26008849 intron CG40178 - chr3L 26008955 intron CG40178 - chr3L_7_26005001 chr3L_26005001 RAL-374 1360 chr3L 26717651 26717690 chr3L 26717747 26717786 9 96 2.5 2.5 2.5 2.6 135 chr3L 26717651 intergenic not near genes chr3L 26717718 intergenic not near genes chr3L 26717786 intergenic not near genes chr3L_9_26715001 chr3L_26715001 RAL-374 1361 chr3L 27390691 27390704 chr3L 27390774 27390801 5 92 23.0 22.0 22.5 0.2 110 chr3L 27390691 intron Dbp80 + chr3L 27390746 intron Dbp80 + chr3L 27390801 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-374 1362 chr3L 27660752 27660798 chr3L 27660853 27660890 7 99 4.5 6.5 5.5 1.1 138 chr3L 27660752 intergenic not near genes chr3L 27660821 intergenic not near genes chr3L 27660890 intergenic not near genes chr3L_7_27660001 chr3L_27660001 RAL-374 1363 chr3R 1521173 1521182 chr3R 1521259 1521290 6 100 8.5 10.5 9.5 0.6 117 chr3R 1521173 intergenic not near genes chr3R 1521232 intergenic not near genes chr3R 1521290 intergenic not near genes chr3R_6_1520001 chr3R_1520001 RAL-374 1364 chr3R 2446795 2446835 chr3R 2449024 2449065 1360 6 2230 30.0 34.5 32.2 0.2 2270 chr3R 2446795 intergenic not near genes chr3R 2447930 intergenic not near genes chr3R 2449065 intergenic not near genes chr3R_6_2445001 chr3R_2445001 RAL-374 1365 chr3R 2534119 2534160 chr3R 2541708 2541738 5 7586 11.0 10.0 10.5 0.4 7619 chr3R 2534119 intergenic not near genes chr3R 2537928 intergenic not near genes chr3R 2541738 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-374 1366 chr3R 2556891 2556918 chr3R 2557607 2557631 8 716 17.5 12.5 15.0 0.5 740 chr3R 2556891 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557631 intron CG41056 - chr3R_8_2555001 chr3R_2555001 RAL-374 1367 chr3R 4063796 4063816 chr3R 4069095 4069106 4 5292 6.0 10.5 8.2 0.4 5310 chr3R 4063796 intergenic not near genes chr3R 4066451 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-374 1368 chr3R 4105031 4105065 chr3R 4110255 4110288 copia 4 5223 2.0 2.5 2.2 1.2 5257 chr3R 4105031 intergenic not near genes chr3R 4107660 intergenic not near genes chr3R 4110288 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-374 1369 chr3R 4161517 4161567 chr3R 4161614 4161664 9 96 1.5 1.0 1.2 4.1 147 chr3R 4161517 3` UTR CG40198 - chr3R 4161590 3` UTR CG40198 - chr3R 4161664 exon CG40198 - chr3R_9_4160001 chr3R_4160001 RAL-374 1370 chr3R 4408413 4408438 chr3R 4412718 4412761 Juan 4 4319 3.5 2.5 3.0 1.0 4348 chr3R 4408413 intron CG32944 - chr3R 4410587 intron CG32944 - chr3R 4412761 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-374 1371 chr3R 4538731 4538755 chr3R 4540138 4540162 1360 7 1407 1.0 2.5 1.8 2.5 1431 chr3R 4538731 intron CG34357 - chr3R 4539446 intron CG34357 - chr3R 4540162 intron CG34357 - chr3R_7_4535001 chr3R_4535001 RAL-374 1372 chr3R 4609529 4609579 chr3R 4610713 4610763 1360 17 1183 5.5 2.0 3.8 3.5 1234 chr3R 4609529 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610763 intergenic not near genes chr3R_17_4610001 chr3R_4610001 RAL-374 1373 chr3R 4680698 4680740 chr3R 4680797 4680839 13 99 3.0 2.0 2.5 3.7 141 chr3R 4680698 intron CG43427 + chr3R 4680768 intron CG43427 + chr3R 4680839 intron CG43427 + chr3R_13_4680001 chr3R_4680001 RAL-374 1374 chr3R 4753251 4753270 chr3R 4757546 4757571 F-element 10 4315 3.5 4.0 3.8 2.1 4320 chr3R 4753251 intron,intron atms +,CG44098 - chr3R 4755411 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-374 1375 chr3R 4769141 4769189 chr3R 4769239 4769285 8 97 1.5 3.5 2.5 2.3 144 chr3R 4769141 intron,intron atms +,CG44098 - chr3R 4769213 intron,intron atms +,CG44098 - chr3R 4769285 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-374 1376 chr3R 4896276 4896324 chr3R 4896387 4896437 5 113 1.5 1.0 1.2 2.3 161 chr3R 4896276 intergenic CR45580 + chr3R 4896356 intergenic CR45580 + chr3R 4896437 5` UTR CR45580 + chr3R_5_4895001 chr3R_4895001 RAL-374 1377 chr3R 4948369 4948388 chr3R 4949011 4949030 6 642 10.5 10.5 10.5 0.5 661 chr3R 4948369 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948700 intergenic UbcD6 - chr3R 4949030 3` UTR UbcD6 - chr3R_6_4945001 chr3R_4945001 RAL-374 1378 chr3R 4965989 4966032 chr3R 4966101 4966143 9 111 4.0 3.5 3.8 1.9 154 chr3R 4965989 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966143 intron CG1124 + chr3R_9_4965001 chr3R_4965001 RAL-374 1379 chr3R 5067968 5068013 chr3R 5073505 5073550 mdg3 13 5535 2.5 2.5 2.5 3.7 5582 chr3R 5067968 intergenic not near genes chr3R 5070759 intergenic not near genes chr3R 5073550 intergenic not near genes chr3R_13_5070001 chr3R_5070001 RAL-374 1380 chr3R 5191372 5191418 chr3R 5191629 5191674 4 265 21.5 23.5 22.5 0.2 302 chr3R 5191372 intron cno - chr3R 5191523 intron cno - chr3R 5191674 intron cno - chr3R_4_5190001 chr3R_5190001 RAL-374 1381 chr3R 5278072 5278119 chr3R 5278173 5278217 5 100 1.5 4.0 2.8 1.3 145 chr3R 5278072 intron mtd - chr3R 5278144 intron mtd - chr3R 5278217 intron mtd - chr3R_5_5275001 chr3R_5275001 RAL-374 1382 chr3R 5338390 5338427 chr3R 5343587 5343618 Rt1c 6 5196 2.0 7.0 4.5 1.1 5228 chr3R 5338390 intron mtd - chr3R 5341004 intron mtd - chr3R 5343618 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-374 1383 chr3R 5365325 5365346 chr3R 5367013 5367032 NOF 9 1687 5.5 9.0 7.2 1.1 1707 chr3R 5365325 intron Cerk - chr3R 5366178 intron Cerk - chr3R 5367032 intron Cerk - chr3R_9_5365001 chr3R_5365001 RAL-374 1384 chr3R 5367142 5367174 chr3R 5367278 5367320 7 144 1.5 3.5 2.5 2.0 178 chr3R 5367142 intron Cerk - chr3R 5367231 intron Cerk - chr3R 5367320 intron Cerk - chr3R_7_5365001 chr3R_5365001 RAL-374 1385 chr3R 5385954 5386003 chr3R 5386145 5386171 13 181 1.0 1.5 1.2 5.9 217 chr3R 5385954 intron kkv - chr3R 5386062 intron kkv - chr3R 5386171 intron kkv - chr3R_13_5385001 chr3R_5385001 RAL-374 1386 chr3R 5445942 5445994 chr3R 5452422 5452473 Burdock 10 6479 1.5 2.0 1.8 3.6 6531 chr3R 5445942 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452473 intron CG14669 + chr3R_10_5445001 chr3R_5445001 RAL-374 1387 chr3R 5494641 5494671 chr3R 5494734 5494763 9 94 1.5 2.5 2.0 3.0 122 chr3R 5494641 intron CG31547 - chr3R 5494702 intron CG31547 - chr3R 5494763 intron CG31547 - chr3R_9_5490001 chr3R_5490001 RAL-374 1388 chr3R 5627127 5627177 chr3R 5627558 5627604 10 430 3.0 1.5 2.2 3.1 477 chr3R 5627127 intergenic not near genes chr3R 5627366 intergenic CG31551 + chr3R 5627604 intergenic CG31551 + chr3R_10_5625001 chr3R_5625001 RAL-374 1389 chr3R 5696129 5696143 chr3R 5696245 5696259 4 116 1.0 3.5 2.2 1.2 130 chr3R 5696129 intron plx + chr3R 5696194 intron plx + chr3R 5696259 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-374 1390 chr3R 5726081 5726120 chr3R 5726263 5726301 5 182 0.5 1.5 1.0 2.5 220 chr3R 5726081 intergenic not near genes chr3R 5726191 intergenic not near genes chr3R 5726301 intergenic not near genes chr3R_5_5725001 chr3R_5725001 RAL-374 1391 chr3R 5746014 5746041 chr3R 5746275 5746297 pogo 9 260 2.5 5.5 4.0 1.8 283 chr3R 5746014 3` UTR Madm + chr3R 5746156 3` UTR Madm + chr3R 5746297 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-374 1392 chr3R 5747002 5747035 chr3R 5753212 5753246 diver 4 6210 1.0 1.5 1.2 1.8 6244 chr3R 5747002 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753246 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-374 1393 chr3R 5772355 5772404 chr3R 5772533 5772582 6 177 3.5 2.0 2.8 1.6 227 chr3R 5772355 intron CG2082 - chr3R 5772468 intron CG2082 - chr3R 5772582 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-374 1394 chr3R 5809100 5809144 chr3R 5809361 5809402 pogo 6 260 2.5 3.5 3.0 1.5 302 chr3R 5809100 3` UTR CG11000 + chr3R 5809251 3` UTR CG11000 + chr3R 5809402 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-374 1395 chr3R 5822366 5822407 chr3R 5823549 5823594 1360 7 1186 4.0 3.0 3.5 1.6 1228 chr3R 5822366 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823594 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-374 1396 chr3R 5861574 5861588 chr3R 5861673 5861685 4 98 1.0 3.0 2.0 1.3 111 chr3R 5861574 intron CG2017 - chr3R 5861630 intron CG2017 - chr3R 5861685 intron CG2017 - chr3R_4_5860001 chr3R_5860001 RAL-374 1397 chr3R 5927547 5927574 chr3R 5927807 5927832 pogo 5 260 3.0 4.0 3.5 1.1 285 chr3R 5927547 intron CG34113 - chr3R 5927690 intron CG34113 - chr3R 5927832 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-374 1398 chr3R 5947983 5948000 chr3R 5948061 5948082 4 98 2.0 1.5 1.8 1.4 99 chr3R 5947983 intron CG34113 - chr3R 5948032 intron CG34113 - chr3R 5948082 intron CG34113 - chr3R_4_5945001 chr3R_5945001 RAL-374 1399 chr3R 6117391 6117444 chr3R 6117531 6117585 8 138 2.5 2.0 2.2 2.5 194 chr3R 6117391 intergenic not near genes chr3R 6117488 intergenic not near genes chr3R 6117585 intergenic not near genes chr3R_8_6115001 chr3R_6115001 RAL-374 1400 chr3R 6158490 6158540 chr3R 6167093 6167140 Tirant 6 8593 2.5 2.0 2.2 1.9 8650 chr3R 6158490 intergenic not near genes chr3R 6162815 intergenic not near genes chr3R 6167140 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-374 1401 chr3R 6206273 6206313 chr3R 6206510 6206550 BS 7 231 2.5 4.0 3.2 1.7 277 chr3R 6206273 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206550 intron Osi24 + chr3R_7_6205001 chr3R_6205001 RAL-374 1402 chr3R 6241318 6241333 chr3R 6241415 6241429 4 97 2.5 2.0 2.2 1.2 111 chr3R 6241318 intergenic not near genes chr3R 6241374 intergenic not near genes chr3R 6241429 intergenic not near genes chr3R_4_6240001 chr3R_6240001 RAL-374 1403 chr3R 6286888 6286938 chr3R 6290088 6290138 9 3204 19.0 6.5 12.8 0.7 3250 chr3R 6286888 intergenic not near genes chr3R 6288513 intron CG15594 + chr3R 6290138 intergenic CG15594 + chr3R_9_6285001 chr3R_6285001 RAL-374 1404 chr3R 6428800 6428826 chr3R 6428922 6428948 8 121 3.5 5.0 4.2 1.5 148 chr3R 6428800 intron gpp + chr3R 6428874 intron gpp + chr3R 6428948 intron gpp + chr3R_8_6425001 chr3R_6425001 RAL-374 1405 chr3R 6523304 6523335 chr3R 6523700 6523730 4 396 2.0 3.5 2.8 1.1 426 chr3R 6523304 intergenic not near genes chr3R 6523517 intergenic not near genes chr3R 6523730 intergenic not near genes chr3R_4_6520001 chr3R_6520001 RAL-374 1406 chr3R 6526847 6526867 chr3R 6526970 6526990 5 123 2.0 2.5 2.2 1.6 143 chr3R 6526847 intergenic not near genes chr3R 6526918 intergenic not near genes chr3R 6526990 intergenic not near genes chr3R_5_6525001 chr3R_6525001 RAL-374 1407 chr3R 6737487 6737519 chr3R 6739294 6739326 Doc 4 1807 2.5 5.0 3.8 0.8 1839 chr3R 6737487 intron pb - chr3R 6738406 intron pb - chr3R 6739326 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-374 1408 chr3R 6780434 6780468 chr3R 6780537 6780571 8 103 2.5 2.0 2.2 2.5 137 chr3R 6780434 intergenic not near genes chr3R 6780502 intergenic not near genes chr3R 6780571 intergenic not near genes chr3R_8_6780001 chr3R_6780001 RAL-374 1409 chr3R 6782426 6782464 chr3R 6782525 6782563 6 98 6.0 4.5 5.2 1.0 137 chr3R 6782426 intergenic not near genes chr3R 6782494 intergenic not near genes chr3R 6782563 intergenic not near genes chr3R_6_6780001 chr3R_6780001 RAL-374 1410 chr3R 6807248 6807283 chr3R 6807350 6807385 4 102 3.5 0.5 2.0 1.3 137 chr3R 6807248 intergenic not near genes chr3R 6807316 intergenic not near genes chr3R 6807385 intergenic not near genes chr3R_4_6805001 chr3R_6805001 RAL-374 1411 chr3R 6828005 6828039 chr3R 6828101 6828135 10 96 3.0 0.5 1.8 3.6 130 chr3R 6828005 intron Scr - chr3R 6828070 intron Scr - chr3R 6828135 intron Scr - chr3R_10_6825001 chr3R_6825001 RAL-374 1412 chr3R 6862205 6862248 chr3R 6862307 6862355 8 106 1.5 3.5 2.5 2.3 150 chr3R 6862205 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862355 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-374 1413 chr3R 6923574 6923587 chr3R 6923675 6923694 5 105 2.0 3.0 2.5 1.4 120 chr3R 6923574 intron Antp - chr3R 6923634 intron Antp - chr3R 6923694 intron Antp - chr3R_5_6920001 chr3R_6920001 RAL-374 1414 chr3R 7012192 7012231 chr3R 7012287 7012329 6 92 2.0 1.0 1.5 2.4 137 chr3R 7012192 intergenic not near genes chr3R 7012260 intergenic not near genes chr3R 7012329 intergenic not near genes chr3R_6_7010001 chr3R_7010001 RAL-374 1415 chr3R 7103266 7103315 chr3R 7103362 7103399 8 92 6.0 3.5 4.8 1.4 133 chr3R 7103266 intron Alh - chr3R 7103332 intron Alh - chr3R 7103399 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-374 1416 chr3R 7126503 7126532 chr3R 7126601 7126647 4 111 1.0 2.0 1.5 1.6 144 chr3R 7126503 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126575 3` UTR CG10068 - chr3R 7126647 3` UTR CG10068 - chr3R_4_7125001 chr3R_7125001 RAL-374 1417 chr3R 7447971 7448006 chr3R 7448069 7448104 12 98 7.0 3.0 5.0 2.0 133 chr3R 7447971 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448104 intergenic not near genes chr3R_12_7445001 chr3R_7445001 RAL-374 1418 chr3R 7589777 7589825 chr3R 7589915 7589966 8 137 2.0 2.5 2.2 2.5 189 chr3R 7589777 intron CG34127 - chr3R 7589872 intron CG34127 - chr3R 7589966 intron CG34127 - chr3R_8_7585001 chr3R_7585001 RAL-374 1419 chr3R 7619965 7619999 chr3R 7620074 7620107 6 109 1.5 2.5 2.0 2.0 142 chr3R 7619965 intron CG34127 - chr3R 7620036 intron CG34127 - chr3R 7620107 intron CG34127 - chr3R_6_7620001 chr3R_7620001 RAL-374 1420 chr3R 7625281 7625319 chr3R 7625749 7625787 5 468 2.0 1.5 1.8 1.8 506 chr3R 7625281 intron CG34127 - chr3R 7625534 intron CG34127 - chr3R 7625787 intron CG34127 - chr3R_5_7625001 chr3R_7625001 RAL-374 1421 chr3R 7654983 7655034 chr3R 7655085 7655136 8 97 2.5 3.5 3.0 2.0 153 chr3R 7654983 intergenic not near genes chr3R 7655060 intergenic not near genes chr3R 7655136 intergenic not near genes chr3R_8_7655001 chr3R_7655001 RAL-374 1422 chr3R 7677914 7677933 chr3R 7678046 7678058 4 130 3.0 3.5 3.2 1.0 144 chr3R 7677914 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-374 1423 chr3R 7680842 7680870 chr3R 7681492 7681495 4 636 1.5 1.0 1.2 1.8 653 chr3R 7680842 intron Nlg1 + chr3R 7681168 intron Nlg1 + chr3R 7681495 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-374 1424 chr3R 7729454 7729487 chr3R 7737412 7737421 Stalker2 11 7953 2.5 3.5 3.0 2.8 7967 chr3R 7729454 intergenic not near genes chr3R 7733438 intergenic not near genes chr3R 7737421 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-374 1425 chr3R 7849663 7849671 chr3R 7850848 7850857 1360 4 1186 1.0 8.0 4.5 0.7 1194 chr3R 7849663 intron CG34384 + chr3R 7850260 intron CG34384 + chr3R 7850857 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-374 1426 chr3R 7857627 7857633 chr3R 7857730 7857736 4 103 6.0 3.5 4.8 0.7 109 chr3R 7857627 3` UTR CG17816 - chr3R 7857682 3` UTR CG17816 - chr3R 7857736 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-374 1427 chr3R 7883113 7883137 chr3R 7883211 7883235 6 98 1.5 2.0 1.8 2.1 122 chr3R 7883113 intron CG17816 - chr3R 7883174 intron CG17816 - chr3R 7883235 intron CG17816 - chr3R_6_7880001 chr3R_7880001 RAL-374 1428 chr3R 7973300 7973333 chr3R 7974381 7974415 1360 5 1082 4.0 1.0 2.5 1.4 1115 chr3R 7973300 intergenic not near genes chr3R 7973858 intergenic not near genes chr3R 7974415 3` UTR CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-374 1429 chr3R 8082565 8082588 chr3R 8082662 8082685 8 97 2.0 5.0 3.5 1.8 120 chr3R 8082565 intron mAChR-B + chr3R 8082625 intron mAChR-B + chr3R 8082685 intron mAChR-B + chr3R_8_8080001 chr3R_8080001 RAL-374 1430 chr3R 8090551 8090567 chr3R 8094046 8094064 297 7 3496 2.0 7.5 4.8 1.2 3513 chr3R 8090551 intergenic CR44330 + chr3R 8092308 intergenic not near genes chr3R 8094064 intergenic CG7900 + chr3R_7_8090001 chr3R_8090001 RAL-374 1431 chr3R 8094392 8094418 chr3R 8099717 8099743 Transpac 4 5325 4.5 2.0 3.2 1.0 5351 chr3R 8094392 intron CG7900 + chr3R 8097068 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-374 1432 chr3R 8101750 8101782 chr3R 8104854 8104878 G2 6 3098 1.0 0.5 0.8 3.3 3128 chr3R 8101750 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104878 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-374 1433 chr3R 8107367 8107415 chr3R 8107520 8107569 8 152 1.0 1.5 1.2 3.6 202 chr3R 8107367 intron puc + chr3R 8107468 intron puc + chr3R 8107569 intron puc + chr3R_8_8105001 chr3R_8105001 RAL-374 1434 chr3R 8402995 8403041 chr3R 8412176 8412205 roo 13 9174 1.5 3.5 2.5 3.7 9210 chr3R 8402995 intron CG45263 - chr3R 8407600 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_13_8405001 chr3R_8405001 RAL-374 1435 chr3R 8537808 8537851 chr3R 8537911 8537946 7 101 1.5 5.0 3.2 1.7 138 chr3R 8537808 intergenic not near genes chr3R 8537877 intergenic not near genes chr3R 8537946 intergenic not near genes chr3R_7_8535001 chr3R_8535001 RAL-374 1436 chr3R 8570466 8570509 chr3R 8575122 8575161 HMS-Beagle 8 4655 4.0 3.0 3.5 1.8 4695 chr3R 8570466 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575161 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-374 1437 chr3R 8601756 8601797 chr3R 8610927 8610970 roo 5 9172 2.5 3.0 2.8 1.3 9214 chr3R 8601756 intron 5-HT2B + chr3R 8606363 intron 5-HT2B + chr3R 8610970 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-374 1438 chr3R 8631489 8631544 chr3R 8631612 8631651 17 121 3.0 2.5 2.8 4.5 162 chr3R 8631489 intergenic not near genes chr3R 8631570 intergenic not near genes chr3R 8631651 intergenic not near genes chr3R_17_8630001 chr3R_8630001 RAL-374 1439 chr3R 8740245 8740273 chr3R 8740335 8740382 4 104 1.5 2.5 2.0 1.3 137 chr3R 8740245 intron CG9801 - chr3R 8740314 intron CG9801 - chr3R 8740382 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-374 1440 chr3R 8745730 8745779 chr3R 8745861 8745910 10 129 1.0 4.0 2.5 2.9 180 chr3R 8745730 intron CG9801 - chr3R 8745820 intron CG9801 - chr3R 8745910 intron CG9801 - chr3R_10_8745001 chr3R_8745001 RAL-374 1441 chr3R 8842537 8842583 chr3R 8842634 8842680 5 97 1.5 0.5 1.0 2.5 143 chr3R 8842537 intron pyd - chr3R 8842608 intron pyd - chr3R 8842680 exon pyd - chr3R_5_8840001 chr3R_8840001 RAL-374 1442 chr3R 8845466 8845515 chr3R 8845759 8845808 11 286 1.0 1.5 1.2 5.0 342 chr3R 8845466 intron pyd - chr3R 8845637 intron pyd - chr3R 8845808 intron pyd - chr3R_11_8845001 chr3R_8845001 RAL-374 1443 chr3R 8898205 8898212 chr3R 8913804 8913811 297 4 15600 3.5 1.5 2.5 1.1 15606 chr3R 8898205 intron pyd - chr3R 8906008 intron pyd - chr3R 8913811 intron pyd - chr3R_4_8905001 chr3R_8905001 RAL-374 1444 chr3R 8917871 8917903 chr3R 8917971 8918003 8 100 3.5 3.5 3.5 1.8 132 chr3R 8917871 intron pyd - chr3R 8917937 intron pyd - chr3R 8918003 intron pyd - chr3R_8_8915001 chr3R_8915001 RAL-374 1445 chr3R 8968738 8968754 chr3R 8968818 8968862 5 103 4.0 4.5 4.2 1.0 124 chr3R 8968738 intergenic not near genes chr3R 8968800 intergenic not near genes chr3R 8968862 intergenic not near genes chr3R_5_8965001 chr3R_8965001 RAL-374 1446 chr3R 9036358 9036396 chr3R 9036456 9036490 4 97 3.0 1.0 2.0 1.3 132 chr3R 9036358 intron neur - chr3R 9036424 intron neur - chr3R 9036490 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-374 1447 chr3R 9083122 9083174 chr3R 9083227 9083250 6 96 0.5 1.5 1.0 3.0 128 chr3R 9083122 intron pum - chr3R 9083186 intron pum - chr3R 9083250 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-374 1448 chr3R 9118856 9118898 chr3R 9119230 9119274 5 376 2.5 1.0 1.8 1.8 418 chr3R 9118856 intron pum - chr3R 9119065 intron pum - chr3R 9119274 intron pum - chr3R_5_9115001 chr3R_9115001 RAL-374 1449 chr3R 9149430 9149463 chr3R 9149530 9149563 6 100 2.0 1.5 1.8 2.1 133 chr3R 9149430 intron pum - chr3R 9149496 intron pum - chr3R 9149563 intron pum - chr3R_6_9145001 chr3R_9145001 RAL-374 1450 chr3R 9278782 9278804 chr3R 9284062 9284083 Rt1a 6 5279 5.0 3.0 4.0 1.2 5301 chr3R 9278782 intergenic not near genes chr3R 9281432 intergenic not near genes chr3R 9284083 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-374 1451 chr3R 9289137 9289186 chr3R 9289422 9289454 8 276 0.5 1.5 1.0 4.0 317 chr3R 9289137 intergenic not near genes chr3R 9289296 intergenic not near genes chr3R 9289454 intergenic not near genes chr3R_8_9285001 chr3R_9285001 RAL-374 1452 chr3R 9317264 9317300 chr3R 9317400 9317439 5 138 3.5 2.0 2.8 1.3 175 chr3R 9317264 intron CG8861 - chr3R 9317352 intron CG8861 - chr3R 9317439 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-374 1453 chr3R 9319561 9319601 chr3R 9320015 9320052 jockey 12 454 4.5 5.0 4.8 2.1 491 chr3R 9319561 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320052 intron CG8861 - chr3R_12_9315001 chr3R_9315001 RAL-374 1454 chr3R 9434690 9434720 chr3R 9434788 9434827 8 105 2.5 5.0 3.8 1.7 137 chr3R 9434690 intron ps + chr3R 9434758 intron ps + chr3R 9434827 intron ps + chr3R_8_9430001 chr3R_9430001 RAL-374 1455 chr3R 10073756 10073803 chr3R 10073885 10073932 6 129 1.0 4.5 2.8 1.6 176 chr3R 10073756 3` UTR nerfin-2 + chr3R 10073844 3` UTR CG5361 - chr3R 10073932 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-374 1456 chr3R 10104150 10104172 chr3R 10104227 10104268 4 89 2.5 2.5 2.5 1.1 118 chr3R 10104150 intron Fmr1 - chr3R 10104209 intron Fmr1 - chr3R 10104268 intron Fmr1 - chr3R_4_10100001 chr3R_10100001 RAL-374 1457 chr3R 10140409 10140465 chr3R 10140519 10140570 5 108 0.0 1.0 0.5 3.3 161 chr3R 10140409 3` UTR TAF1B - chr3R 10140490 3` UTR TAF1B - chr3R 10140570 3` UTR TAF1B - chr3R_5_10140001 chr3R_10140001 RAL-374 1458 chr3R 10194612 10194657 chr3R 10194723 10194768 14 110 1.0 2.5 1.8 5.0 156 chr3R 10194612 intron Syn + chr3R 10194690 intron Syn + chr3R 10194768 intron Syn + chr3R_14_10190001 chr3R_10190001 RAL-374 1459 chr3R 10231771 10231813 chr3R 10237368 10237408 mdg3 10 5596 2.5 3.0 2.8 2.6 5637 chr3R 10231771 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237408 intron CG42795 + chr3R_10_10230001 chr3R_10230001 RAL-374 1460 chr3R 10268989 10269011 chr3R 10272128 10272166 5 3145 18.5 24.0 21.2 0.2 3177 chr3R 10268989 intron CG43143 + chr3R 10270578 intron CG43143 + chr3R 10272166 intron CG43143 + chr3R_5_10270001 chr3R_10270001 RAL-374 1461 chr3R 10401883 10401911 chr3R 10402093 10402121 7 208 5.0 5.0 5.0 1.2 238 chr3R 10401883 exon mthl11 + chr3R 10402002 intron mthl11 + chr3R 10402121 exon mthl11 + chr3R_7_10400001 chr3R_10400001 RAL-374 1462 chr3R 10430657 10430700 chr3R 10430765 10430807 19 108 4.5 1.5 3.0 4.8 150 chr3R 10430657 intergenic not near genes chr3R 10430732 intergenic not near genes chr3R 10430807 intergenic not near genes chr3R_19_10430001 chr3R_10430001 RAL-374 1463 chr3R 10456950 10456992 chr3R 10457208 10457242 11 255 0.5 4.0 2.2 3.4 292 chr3R 10456950 intergenic not near genes chr3R 10457096 intergenic not near genes chr3R 10457242 intergenic not near genes chr3R_11_10455001 chr3R_10455001 RAL-374 1464 chr3R 10641575 10641596 chr3R 10641674 10641690 7 96 4.0 1.0 2.5 2.0 115 chr3R 10641575 5` UTR CR44018 + chr3R 10641632 5` UTR CR44018 + chr3R 10641690 5` UTR CR44018 + chr3R_7_10640001 chr3R_10640001 RAL-374 1465 chr3R 10641597 10641618 chr3R 10641673 10641718 6 96 1.0 1.0 1.0 3.0 121 chr3R 10641597 5` UTR CR44018 + chr3R 10641658 5` UTR CR44018 + chr3R 10641718 5` UTR CR44018 + chr3R_6_10640001 chr3R_10640001 RAL-374 1466 chr3R 10651796 10651835 chr3R 10651915 10651954 8 117 3.5 3.0 3.2 1.9 158 chr3R 10651796 intergenic not near genes chr3R 10651875 intergenic not near genes chr3R 10651954 intergenic not near genes chr3R_8_10650001 chr3R_10650001 RAL-374 1467 chr3R 10657280 10657321 chr3R 10657381 10657421 7 96 0.5 4.0 2.2 2.2 141 chr3R 10657280 intergenic not near genes chr3R 10657350 intergenic not near genes chr3R 10657421 intergenic not near genes chr3R_7_10655001 chr3R_10655001 RAL-374 1468 chr3R 10718252 10718302 chr3R 10718349 10718392 6 94 2.5 2.5 2.5 1.7 140 chr3R 10718252 intergenic not near genes chr3R 10718322 intergenic not near genes chr3R 10718392 intergenic not near genes chr3R_6_10715001 chr3R_10715001 RAL-374 1469 chr3R 10732320 10732334 chr3R 10733210 10733226 4 891 3.5 4.0 3.8 0.8 906 chr3R 10732320 intergenic not near genes chr3R 10732773 intergenic not near genes chr3R 10733226 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-374 1470 chr3R 10745409 10745451 chr3R 10745516 10745530 7 100 1.5 0.5 1.0 3.5 121 chr3R 10745409 intron TkR86C - chr3R 10745470 intron TkR86C - chr3R 10745530 intron TkR86C - chr3R_7_10745001 chr3R_10745001 RAL-374 1471 chr3R 10785798 10785837 chr3R 10785897 10785933 11 98 2.5 3.5 3.0 2.8 135 chr3R 10785798 intron Rbp1 + chr3R 10785866 intron Rbp1 + chr3R 10785933 intron Rbp1 + chr3R_11_10785001 chr3R_10785001 RAL-374 1472 chr3R 10804159 10804206 chr3R 10811711 10811758 17.6 6 7552 2.0 2.5 2.2 1.9 7599 chr3R 10804159 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811758 3` UTR CG14693 - chr3R_6_10805001 chr3R_10805001 RAL-374 1473 chr3R 10886852 10886891 chr3R 10886952 10886990 7 100 2.0 1.5 1.8 2.5 138 chr3R 10886852 intron Leash + chr3R 10886921 intron Leash + chr3R 10886990 intron Leash + chr3R_7_10885001 chr3R_10885001 RAL-374 1474 chr3R 10919667 10919718 chr3R 10919763 10919816 16 97 1.0 2.0 1.5 6.4 149 chr3R 10919667 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919816 intergenic not near genes chr3R_16_10915001 chr3R_10915001 RAL-374 1475 chr3R 10920033 10920077 chr3R 10920127 10920175 7 97 2.0 2.5 2.2 2.2 142 chr3R 10920033 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920175 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-374 1476 chr3R 10963545 10963577 chr3R 10963659 10963690 4 113 1.5 1.5 1.5 1.6 145 chr3R 10963545 intergenic not near genes chr3R 10963618 intergenic not near genes chr3R 10963690 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-374 1477 chr3R 10974097 10974141 chr3R 10974209 10974251 14 112 2.0 4.5 3.2 3.3 154 chr3R 10974097 intron CG34114 + chr3R 10974174 intron CG34114 + chr3R 10974251 intron CG34114 + chr3R_14_10970001 chr3R_10970001 RAL-374 1478 chr3R 11048268 11048303 chr3R 11048448 11048454 9 176 0.5 2.5 1.5 3.6 186 chr3R 11048268 3` UTR CG34114 + chr3R 11048361 3` UTR CG34114 + chr3R 11048454 3` UTR CG34114 + chr3R_9_11045001 chr3R_11045001 RAL-374 1479 chr3R 11085461 11085471 chr3R 11085558 11085568 4 97 2.0 3.0 2.5 1.1 107 chr3R 11085461 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085568 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-374 1480 chr3R 11085757 11085798 chr3R 11086072 11086112 7 314 3.5 1.0 2.2 2.2 355 chr3R 11085757 intergenic CR44940 - chr3R 11085934 intergenic CR44940 - chr3R 11086112 intergenic not near genes chr3R_7_11085001 chr3R_11085001 RAL-374 1481 chr3R 11088653 11088699 chr3R 11088760 11088810 12 111 0.0 1.0 0.5 8.0 157 chr3R 11088653 exon CG43449 + chr3R 11088732 3` UTR CG43449 + chr3R 11088810 3` UTR CG43449 + chr3R_12_11085001 chr3R_11085001 RAL-374 1482 chr3R 11151673 11151700 chr3R 11156547 11156574 8 4874 16.5 12.5 14.5 0.5 4901 chr3R 11151673 3` UTR Ugt86Di - chr3R 11154124 intergenic Ugt86Di - chr3R 11156574 intergenic Ugt86Dc + chr3R_8_11150001 chr3R_11150001 RAL-374 1483 chr3R 11197969 11198016 chr3R 11198088 11198135 11 117 2.0 2.5 2.2 3.4 166 chr3R 11197969 intron cu + chr3R 11198052 intron cu + chr3R 11198135 intron cu + chr3R_11_11195001 chr3R_11195001 RAL-374 1484 chr3R 11269431 11269478 chr3R 11269575 11269623 5 145 0.0 0.0 0.0 5.0 192 chr3R 11269431 3` UTR CR31386 - chr3R 11269527 3` UTR CR31386 - chr3R 11269623 3` UTR CR31386 - chr3R_5_11265001 chr3R_11265001 RAL-374 1485 chr3R 11321022 11321054 chr3R 11321106 11321154 5 97 0.5 2.0 1.2 2.3 132 chr3R 11321022 intergenic not near genes chr3R 11321088 intergenic not near genes chr3R 11321154 intergenic not near genes chr3R_5_11320001 chr3R_11320001 RAL-374 1486 chr3R 11342542 11342567 chr3R 11342638 11342663 8 96 1.0 2.5 1.8 2.9 121 chr3R 11342542 intron pros + chr3R 11342602 intron pros + chr3R 11342663 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-374 1487 chr3R 11379224 11379256 chr3R 11388395 11388427 roo 6 9174 5.0 3.5 4.2 1.2 9203 chr3R 11379224 intron pros + chr3R 11383826 intron pros + chr3R 11388427 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-374 1488 chr3R 11461567 11461588 chr3R 11461678 11461731 8 129 1.5 3.5 2.5 2.3 164 chr3R 11461567 intron CG17230 + chr3R 11461649 intron CG17230 + chr3R 11461731 intron CG17230 + chr3R_8_11460001 chr3R_11460001 RAL-374 1489 chr3R 11476930 11476972 chr3R 11477052 11477094 9 122 2.0 2.5 2.2 2.8 164 chr3R 11476930 intergenic not near genes chr3R 11477012 intergenic not near genes chr3R 11477094 intergenic not near genes chr3R_9_11475001 chr3R_11475001 RAL-374 1490 chr3R 11549795 11549820 chr3R 11549893 11549917 4 98 3.5 1.0 2.2 1.2 122 chr3R 11549795 intergenic not near genes chr3R 11549856 intergenic not near genes chr3R 11549917 intergenic not near genes chr3R_4_11545001 chr3R_11545001 RAL-374 1491 chr3R 11656486 11656521 chr3R 11656581 11656621 11 96 5.5 3.5 4.5 2.0 135 chr3R 11656486 5` UTR CG42327 + chr3R 11656554 5` UTR CG42327 + chr3R 11656621 5` UTR CG42327 + chr3R_11_11655001 chr3R_11655001 RAL-374 1492 chr3R 11664775 11664821 chr3R 11664887 11664932 8 109 2.0 3.0 2.5 2.3 157 chr3R 11664775 intron CG42327 + chr3R 11664854 intron CG42327 + chr3R 11664932 intron CG42327 + chr3R_8_11660001 chr3R_11660001 RAL-374 1493 chr3R 11694706 11694751 chr3R 11694817 11694863 11 109 1.5 3.5 2.5 3.1 157 chr3R 11694706 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694863 intergenic not near genes chr3R_11_11690001 chr3R_11690001 RAL-374 1494 chr3R 11734156 11734167 chr3R 11734295 11734297 4 136 2.5 3.5 3.0 1.0 141 chr3R 11734156 intergenic not near genes chr3R 11734226 intergenic not near genes chr3R 11734297 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-374 1495 chr3R 11841052 11841083 chr3R 11846262 11846294 BS 6 5208 4.5 2.5 3.5 1.3 5242 chr3R 11841052 intron CG6959 - chr3R 11843673 intron CG6959 - chr3R 11846294 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-374 1496 chr3R 11853419 11853465 chr3R 11853588 11853632 11 167 0.0 3.0 1.5 4.4 213 chr3R 11853419 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853632 intron CG6959 - chr3R_11_11850001 chr3R_11850001 RAL-374 1497 chr3R 11853754 11853798 chr3R 11853879 11853921 6 125 4.0 5.0 4.5 1.1 167 chr3R 11853754 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853921 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-374 1498 chr3R 11957833 11957861 chr3R 11958136 11958163 S-element 5 303 2.5 0.0 1.2 2.3 330 chr3R 11957833 intergenic not near genes chr3R 11957998 intergenic not near genes chr3R 11958163 intergenic not near genes chr3R_5_11955001 chr3R_11955001 RAL-374 1499 chr3R 12022864 12022913 chr3R 12025061 12025099 pogo 13 2195 3.0 3.5 3.2 3.1 2235 chr3R 12022864 intergenic not near genes chr3R 12023982 intergenic not near genes chr3R 12025099 intergenic not near genes chr3R_13_12020001 chr3R_12020001 RAL-374 1500 chr3R 12045160 12045198 chr3R 12045251 12045293 7 95 3.5 1.5 2.5 2.0 133 chr3R 12045160 intergenic not near genes chr3R 12045226 intergenic not near genes chr3R 12045293 intergenic not near genes chr3R_7_12045001 chr3R_12045001 RAL-374 1501 chr3R 12080845 12080897 chr3R 12080942 12080995 15 96 2.5 0.5 1.5 6.0 150 chr3R 12080845 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080995 intron CG14741 - chr3R_15_12080001 chr3R_12080001 RAL-374 1502 chr3R 12214362 12214371 chr3R 12214436 12214465 4 96 1.5 1.5 1.5 1.6 103 chr3R 12214362 3` UTR CG4848 - chr3R 12214414 3` UTR CG4848 - chr3R 12214465 3` UTR CG4848 - chr3R_4_12210001 chr3R_12210001 RAL-374 1503 chr3R 12247128 12247172 chr3R 12247226 12247277 10 104 4.0 1.0 2.5 2.9 149 chr3R 12247128 intergenic not near genes chr3R 12247202 intergenic not near genes chr3R 12247277 intergenic not near genes chr3R_10_12245001 chr3R_12245001 RAL-374 1504 chr3R 12299828 12299917 chr3R 12300206 12300207 11 341 0.0 2.5 1.2 5.0 379 chr3R 12299828 intron svp + chr3R 12300018 intron svp + chr3R 12300207 intron svp + chr3R_11_12300001 chr3R_12300001 RAL-374 1505 chr3R 12314206 12314261 chr3R 12314340 12314370 10 131 5.0 3.5 4.2 1.9 164 chr3R 12314206 intergenic not near genes chr3R 12314288 intergenic not near genes chr3R 12314370 intergenic not near genes chr3R_10_12310001 chr3R_12310001 RAL-374 1506 chr3R 12328160 12328189 chr3R 12328290 12328322 6 132 3.0 2.5 2.8 1.6 162 chr3R 12328160 intergenic CR45584 + chr3R 12328241 intergenic CR45584 + chr3R 12328322 intergenic CR45584 + chr3R_6_12325001 chr3R_12325001 RAL-374 1507 chr3R 12344123 12344158 chr3R 12344219 12344255 9 97 0.5 3.5 2.0 3.0 132 chr3R 12344123 intergenic not near genes chr3R 12344189 intergenic not near genes chr3R 12344255 intergenic not near genes chr3R_9_12340001 chr3R_12340001 RAL-374 1508 chr3R 12392880 12392899 chr3R 12392998 12393006 9 118 3.0 5.5 4.2 1.7 126 chr3R 12392880 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392943 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393006 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_9_12390001 chr3R_12390001 RAL-374 1509 chr3R 12436467 12436484 chr3R 12436548 12436591 7 94 4.5 6.0 5.2 1.1 124 chr3R 12436467 exon Desat2 + chr3R 12436529 exon Desat2 + chr3R 12436591 exon Desat2 + chr3R_7_12435001 chr3R_12435001 RAL-374 1510 chr3R 12522331 12522385 chr3R 12522437 12522444 6 86 4.5 2.5 3.5 1.3 113 chr3R 12522331 5` UTR Octbeta3R - chr3R 12522388 5` UTR Octbeta3R - chr3R 12522444 5` UTR Octbeta3R - chr3R_6_12520001 chr3R_12520001 RAL-374 1511 chr3R 12558223 12558271 chr3R 12558329 12558376 11 105 3.0 1.5 2.2 3.4 153 chr3R 12558223 intron Octbeta2R - chr3R 12558300 intron Octbeta2R - chr3R 12558376 intron Octbeta2R - chr3R_11_12555001 chr3R_12555001 RAL-374 1512 chr3R 12599374 12599407 chr3R 12599477 12599477 6 98 2.0 7.0 4.5 1.1 103 chr3R 12599374 intergenic not near genes chr3R 12599426 intergenic not near genes chr3R 12599477 intergenic not near genes chr3R_6_12595001 chr3R_12595001 RAL-374 1513 chr3R 12666767 12666800 chr3R 12666907 12666924 13 143 2.5 3.0 2.8 3.4 157 chr3R 12666767 intron CG14395 + chr3R 12666846 intron CG14395 + chr3R 12666924 intron CG14395 + chr3R_13_12665001 chr3R_12665001 RAL-374 1514 chr3R 12733472 12733494 chr3R 12733566 12733590 5 94 3.0 3.5 3.2 1.2 118 chr3R 12733472 intergenic not near genes chr3R 12733531 intergenic not near genes chr3R 12733590 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-374 1515 chr3R 12735162 12735183 chr3R 12735432 12735453 4 270 2.0 2.5 2.2 1.2 291 chr3R 12735162 intergenic not near genes chr3R 12735308 intergenic not near genes chr3R 12735453 intergenic not near genes chr3R_4_12735001 chr3R_12735001 RAL-374 1516 chr3R 12763134 12763149 chr3R 12763231 12763245 5 96 0.0 5.0 2.5 1.4 111 chr3R 12763134 intron beat-Vc - chr3R 12763190 intron beat-Vc - chr3R 12763245 intron beat-Vc - chr3R_5_12760001 chr3R_12760001 RAL-374 1517 chr3R 12766077 12766093 chr3R 12766221 12766237 4 144 1.5 1.5 1.5 1.6 160 chr3R 12766077 intron beat-Vc - chr3R 12766157 intron beat-Vc - chr3R 12766237 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-374 1518 chr3R 12780260 12780286 chr3R 12780393 12780419 BS 5 130 3.0 0.5 1.8 1.8 159 chr3R 12780260 intron beat-Vc - chr3R 12780340 intron beat-Vc - chr3R 12780419 intron beat-Vc - chr3R_5_12780001 chr3R_12780001 RAL-374 1519 chr3R 12786434 12786482 chr3R 12786813 12786859 11 376 2.5 4.0 3.2 2.6 425 chr3R 12786434 intergenic not near genes chr3R 12786646 intergenic not near genes chr3R 12786859 intergenic not near genes chr3R_11_12785001 chr3R_12785001 RAL-374 1520 chr3R 12819027 12819047 chr3R 12819130 12819150 4 103 3.0 6.0 4.5 0.7 123 chr3R 12819027 intergenic not near genes chr3R 12819088 intergenic not near genes chr3R 12819150 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-374 1521 chr3R 12866473 12866502 chr3R 12866643 12866673 8 171 4.0 2.5 3.2 1.9 200 chr3R 12866473 intergenic not near genes chr3R 12866573 intergenic not near genes chr3R 12866673 intergenic not near genes chr3R_8_12865001 chr3R_12865001 RAL-374 1522 chr3R 12889525 12889574 chr3R 12889633 12889682 9 108 2.5 4.5 3.5 2.0 157 chr3R 12889525 intergenic not near genes chr3R 12889604 intergenic not near genes chr3R 12889682 intergenic not near genes chr3R_9_12885001 chr3R_12885001 RAL-374 1523 chr3R 12920161 12920181 chr3R 12925384 12925404 copia 4 5220 2.0 6.0 4.0 0.8 5243 chr3R 12920161 intron beat-Vb + chr3R 12922782 intron beat-Vb + chr3R 12925404 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-374 1524 chr3R 12943975 12944007 chr3R 12944082 12944114 7 105 2.5 5.0 3.8 1.5 139 chr3R 12943975 intergenic not near genes chr3R 12944044 intergenic not near genes chr3R 12944114 intergenic not near genes chr3R_7_12940001 chr3R_12940001 RAL-374 1525 chr3R 12952260 12952314 chr3R 12952404 12952415 10 134 3.5 1.5 2.5 2.9 155 chr3R 12952260 intron grsm - chr3R 12952338 intron grsm - chr3R 12952415 intron grsm - chr3R_10_12950001 chr3R_12950001 RAL-374 1526 chr3R 12972545 12972583 chr3R 12972703 12972742 6 159 2.0 3.0 2.5 1.7 197 chr3R 12972545 intron CG7381 - chr3R 12972644 intron CG7381 - chr3R 12972742 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-374 1527 chr3R 13065812 13065845 chr3R 13065908 13065941 10 96 2.0 1.5 1.8 3.6 129 chr3R 13065812 intron sim + chr3R 13065876 intron sim + chr3R 13065941 intron sim + chr3R_10_13065001 chr3R_13065001 RAL-374 1528 chr3R 13143015 13143064 chr3R 13148612 13148652 mdg3 7 5582 2.5 4.5 3.5 1.6 5637 chr3R 13143015 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145834 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148652 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-374 1529 chr3R 13195942 13195980 chr3R 13196051 13196081 15 112 5.0 1.0 3.0 3.8 139 chr3R 13195942 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196081 intergenic not near genes chr3R_15_13195001 chr3R_13195001 RAL-374 1530 chr3R 13197163 13197196 chr3R 13198461 13198496 7 1299 9.5 14.5 12.0 0.5 1333 chr3R 13197163 intergenic not near genes chr3R 13197830 intergenic not near genes chr3R 13198496 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-374 1531 chr3R 13197029 13197074 chr3R 13198479 13198527 6 1452 9.5 15.5 12.5 0.4 1498 chr3R 13197029 intergenic not near genes chr3R 13197778 intergenic not near genes chr3R 13198527 intergenic not near genes chr3R_6_13195001 chr3R_13195001 RAL-374 1532 chr3R 13206633 13206679 chr3R 13206890 13206915 16 253 2.5 1.0 1.8 5.7 282 chr3R 13206633 intergenic not near genes chr3R 13206774 intergenic not near genes chr3R 13206915 intergenic not near genes chr3R_16_13205001 chr3R_13205001 RAL-374 1533 chr3R 13418647 13418672 chr3R 13418743 13418768 4 96 3.0 3.5 3.2 1.0 121 chr3R 13418647 intergenic not near genes chr3R 13418708 intergenic not near genes chr3R 13418768 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-374 1534 chr3R 13435371 13435421 chr3R 13435566 13435616 10 191 1.0 1.5 1.2 4.5 245 chr3R 13435371 intergenic yrt - chr3R 13435494 intergenic not near genes chr3R 13435616 intergenic not near genes chr3R_10_13435001 chr3R_13435001 RAL-374 1535 chr3R 13517211 13517258 chr3R 13520047 13520094 jockey 5 2837 3.0 0.0 1.5 2.0 2883 chr3R 13517211 intergenic not near genes chr3R 13518652 intergenic not near genes chr3R 13520094 intergenic not near genes chr3R_5_13515001 chr3R_13515001 RAL-374 1536 chr3R 13602174 13602187 chr3R 13602270 13602283 6 96 3.0 3.0 3.0 1.5 109 chr3R 13602174 intergenic not near genes chr3R 13602228 intergenic not near genes chr3R 13602283 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-374 1537 chr3R 13603040 13603055 chr3R 13603151 13603166 6 111 7.5 3.0 5.2 1.0 126 chr3R 13603040 intergenic not near genes chr3R 13603103 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-374 1538 chr3R 13619014 13619055 chr3R 13619138 13619179 8 124 3.5 1.0 2.2 2.5 165 chr3R 13619014 intergenic CR45680 - chr3R 13619096 intergenic not near genes chr3R 13619179 intergenic not near genes chr3R_8_13615001 chr3R_13615001 RAL-374 1539 chr3R 13683490 13683518 chr3R 13683586 13683614 6 96 3.5 3.5 3.5 1.3 124 chr3R 13683490 intron omd - chr3R 13683552 intron omd - chr3R 13683614 intron omd - chr3R_6_13680001 chr3R_13680001 RAL-374 1540 chr3R 13693026 13693028 chr3R 21907534 21907536 9 8214507 8.5 12.0 10.2 0.8 8214510 chr3R 13693026 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-374 1541 chr3R 13765231 13765272 chr3R 13765334 13765376 4 103 5.0 2.5 3.8 0.8 145 chr3R 13765231 intergenic not near genes chr3R 13765304 intergenic CG9312 + chr3R 13765376 intergenic CG9312 + chr3R_4_13765001 chr3R_13765001 RAL-374 1542 chr3R 13809908 13809925 chr3R 13809984 13810022 4 88 1.5 1.0 1.2 1.8 114 chr3R 13809908 intergenic not near genes chr3R 13809965 intergenic not near genes chr3R 13810022 intergenic not near genes chr3R_4_13805001 chr3R_13805001 RAL-374 1543 chr3R 13863682 13863712 chr3R 13863766 13863820 5 101 3.0 1.5 2.2 1.6 138 chr3R 13863682 intergenic not near genes chr3R 13863751 intergenic not near genes chr3R 13863820 intergenic not near genes chr3R_5_13860001 chr3R_13860001 RAL-374 1544 chr3R 13975366 13975407 chr3R 13975452 13975506 11 98 3.0 3.5 3.2 2.6 140 chr3R 13975366 intron rdx - chr3R 13975436 intron rdx - chr3R 13975506 intron rdx - chr3R_11_13975001 chr3R_13975001 RAL-374 1545 chr3R 14021631 14021678 chr3R 14023468 14023514 S-element 14 1836 4.0 1.5 2.8 3.7 1883 chr3R 14021631 intron rdx - chr3R 14022572 intron rdx - chr3R 14023514 intron rdx - chr3R_14_14020001 chr3R_14020001 RAL-374 1546 chr3R 14067131 14067151 chr3R 14067230 14067250 6 99 1.5 1.0 1.2 2.7 119 chr3R 14067131 exon foxo + chr3R 14067190 intron foxo + chr3R 14067250 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-374 1547 chr3R 14083394 14083409 chr3R 14083515 14083530 8 121 5.5 0.0 2.8 2.1 136 chr3R 14083394 intron foxo + chr3R 14083462 intron foxo + chr3R 14083530 intron foxo + chr3R_8_14080001 chr3R_14080001 RAL-374 1548 chr3R 14117428 14117460 chr3R 14117524 14117556 8 96 2.5 4.0 3.2 1.9 128 chr3R 14117428 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117556 intron Kif19A - chr3R_8_14115001 chr3R_14115001 RAL-374 1549 chr3R 14174940 14174993 chr3R 14175047 14175071 12 102 3.0 1.5 2.2 3.8 131 chr3R 14174940 3` UTR Dop1R1 - chr3R 14175006 3` UTR Dop1R1 - chr3R 14175071 3` UTR Dop1R1 - chr3R_12_14175001 chr3R_14175001 RAL-374 1550 chr3R 14180790 14180833 chr3R 14185575 14185618 F-element 7 4785 3.5 3.5 3.5 1.6 4828 chr3R 14180790 intron Dop1R1 - chr3R 14183204 intron Dop1R1 - chr3R 14185618 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-374 1551 chr3R 14194413 14194452 chr3R 14203582 14203620 roo 11 9168 4.0 4.0 4.0 2.2 9207 chr3R 14194413 intron Dop1R1 - chr3R 14199016 intron Dop1R1 - chr3R 14203620 intron Dop1R1 - chr3R_11_14195001 chr3R_14195001 RAL-374 1552 chr3R 14246387 14246401 chr3R 14247896 14247907 jockey 4 1510 3.5 4.0 3.8 0.8 1520 chr3R 14246387 intergenic not near genes chr3R 14247147 intergenic not near genes chr3R 14247907 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-374 1553 chr3R 14249988 14250032 chr3R 14250097 14250148 9 114 4.0 2.0 3.0 2.2 160 chr3R 14249988 intergenic not near genes chr3R 14250068 intergenic not near genes chr3R 14250148 intergenic not near genes chr3R_9_14250001 chr3R_14250001 RAL-374 1554 chr3R 14280221 14280245 chr3R 14280318 14280333 5 95 4.5 2.0 3.2 1.2 112 chr3R 14280221 intron trx - chr3R 14280277 intron trx - chr3R 14280333 intron trx - chr3R_5_14280001 chr3R_14280001 RAL-374 1555 chr3R 14327670 14327723 chr3R 14327772 14327825 14 102 2.0 1.0 1.5 5.6 155 chr3R 14327670 3` UTR CG3321 + chr3R 14327748 intergenic CG3321 +,spn-B + chr3R 14327825 intergenic CG3321 +,spn-B + chr3R_14_14325001 chr3R_14325001 RAL-374 1556 chr3R 14440703 14440749 chr3R 14440799 14440845 6 94 0.5 3.5 2.0 2.0 142 chr3R 14440703 intron cv-c - chr3R 14440774 intron cv-c - chr3R 14440845 intron cv-c - chr3R_6_14440001 chr3R_14440001 RAL-374 1557 chr3R 14546053 14546067 chr3R 14546150 14546161 6 95 1.5 2.5 2.0 2.0 108 chr3R 14546053 intron Pde6 - chr3R 14546107 intron Pde6 - chr3R 14546161 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-374 1558 chr3R 14608462 14608474 chr3R 14608574 14608586 4 112 0.5 1.5 1.0 2.0 124 chr3R 14608462 intergenic stumps + chr3R 14608524 intergenic stumps + chr3R 14608586 intergenic not near genes chr3R_4_14605001 chr3R_14605001 RAL-374 1559 chr3R 14664858 14664886 chr3R 14664955 14664983 8 97 2.5 2.5 2.5 2.3 125 chr3R 14664858 intergenic BigH1 +,Meltrin - chr3R 14664920 3` UTR Meltrin - chr3R 14664983 3` UTR Meltrin - chr3R_8_14660001 chr3R_14660001 RAL-374 1560 chr3R 14704366 14704418 chr3R 14704462 14704491 12 95 2.0 3.0 2.5 3.4 125 chr3R 14704366 intron kibra - chr3R 14704428 intron kibra - chr3R 14704491 intron kibra - chr3R_12_14700001 chr3R_14700001 RAL-374 1561 chr3R 14709318 14709337 chr3R 14709414 14709440 6 101 2.0 4.0 3.0 1.5 122 chr3R 14709318 intron kibra - chr3R 14709379 intron kibra - chr3R 14709440 intron kibra - chr3R_6_14705001 chr3R_14705001 RAL-374 1562 chr3R 14775439 14775484 chr3R 14775547 14775592 6 108 2.0 5.0 3.5 1.3 153 chr3R 14775439 intron jvl + chr3R 14775516 intron jvl + chr3R 14775592 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-374 1563 chr3R 14779077 14779095 chr3R 14779152 14779194 6 95 2.0 3.0 2.5 1.7 117 chr3R 14779077 intron jvl + chr3R 14779136 intron jvl + chr3R 14779194 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-374 1564 chr3R 14898458 14898498 chr3R 14898598 14898638 8 140 3.0 1.5 2.2 2.5 180 chr3R 14898458 intergenic Nup93-2 -,CG3817 + chr3R 14898548 intergenic Nup93-2 -,CG3817 + chr3R 14898638 intergenic CG3817 +,Nup93-2 - chr3R_8_14895001 chr3R_14895001 RAL-374 1565 chr3R 14954792 14954831 chr3R 14955024 14955063 7 231 2.0 1.0 1.5 2.8 271 chr3R 14954792 intergenic not near genes chr3R 14954928 intergenic not near genes chr3R 14955063 intergenic not near genes chr3R_7_14950001 chr3R_14950001 RAL-374 1566 chr3R 15026316 15026339 chr3R 15026422 15026443 7 105 2.5 1.5 2.0 2.3 127 chr3R 15026316 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026443 intergenic not near genes chr3R_7_15025001 chr3R_15025001 RAL-374 1567 chr3R 15035982 15036032 chr3R 15036306 15036356 6 321 8.5 6.0 7.2 0.7 374 chr3R 15035982 intergenic not near genes chr3R 15036169 intergenic not near genes chr3R 15036356 intergenic not near genes chr3R_6_15035001 chr3R_15035001 RAL-374 1568 chr3R 15041422 15041438 chr3R 15045210 15045226 Doc 6 3788 0.0 4.5 2.2 1.9 3804 chr3R 15041422 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-374 1569 chr3R 15079789 15079837 chr3R 15080048 15080097 pogo 11 260 3.0 1.5 2.2 3.4 308 chr3R 15079789 3` UTR CG6966 - chr3R 15079943 3` UTR CG6966 - chr3R 15080097 3` UTR CG6966 - chr3R_11_15075001 chr3R_15075001 RAL-374 1570 chr3R 15102487 15102525 chr3R 15109762 15109800 412 5 7275 2.5 2.5 2.5 1.4 7313 chr3R 15102487 intron CG42788 - chr3R 15106144 intron CG42788 - chr3R 15109800 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-374 1571 chr3R 15132050 15132071 chr3R 15135129 15135151 Juan 8 3080 6.0 8.0 7.0 1.0 3101 chr3R 15132050 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135151 3` UTR CG6912 - chr3R_8_15130001 chr3R_15130001 RAL-374 1572 chr3R 15162527 15162542 chr3R 15167314 15167329 F-element 9 4786 4.5 2.0 3.2 2.1 4802 chr3R 15162527 intron Gyc88E + chr3R 15164928 intron Gyc88E + chr3R 15167329 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-374 1573 chr3R 15407063 15407088 chr3R 15407154 15407181 4 95 3.0 2.0 2.5 1.1 118 chr3R 15407063 5` UTR CG6125 - chr3R 15407122 intergenic CG6125 - chr3R 15407181 intergenic CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-374 1574 chr3R 15416236 15416282 chr3R 15416335 15416382 11 99 3.0 5.5 4.2 2.1 146 chr3R 15416236 3` UTR Atx2 + chr3R 15416309 3` UTR Atx2 + chr3R 15416382 3` UTR Atx2 + chr3R_11_15415001 chr3R_15415001 RAL-374 1575 chr3R 15445893 15445904 chr3R 15445995 15446009 4 104 3.5 0.5 2.0 1.3 116 chr3R 15445893 exon AdamTS-A - chr3R 15445951 intron AdamTS-A - chr3R 15446009 intron AdamTS-A - chr3R_4_15445001 chr3R_15445001 RAL-374 1576 chr3R 15451424 15451450 chr3R 15451622 15451648 5 198 4.5 6.0 5.2 0.8 224 chr3R 15451424 intron AdamTS-A - chr3R 15451536 intron AdamTS-A - chr3R 15451648 intron AdamTS-A - chr3R_5_15450001 chr3R_15450001 RAL-374 1577 chr3R 15594673 15594675 chr3R 15594776 15594778 4 103 0.0 6.0 3.0 1.0 105 chr3R 15594673 intergenic not near genes chr3R 15594726 intergenic not near genes chr3R 15594778 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-374 1578 chr3R 15599456 15599481 chr3R 15599775 15599800 7 320 3.0 2.5 2.8 1.8 344 chr3R 15599456 intergenic not near genes chr3R 15599628 intergenic not near genes chr3R 15599800 intergenic not near genes chr3R_7_15595001 chr3R_15595001 RAL-374 1579 chr3R 15601155 15601181 chr3R 15608694 15608723 412 8 7541 5.0 7.0 6.0 1.1 7568 chr3R 15601155 intergenic not near genes chr3R 15604939 intergenic not near genes chr3R 15608723 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-374 1580 chr3R 15618711 15618760 chr3R 15626205 15626254 blood 11 7494 1.0 3.5 2.2 3.4 7543 chr3R 15618711 intergenic not near genes chr3R 15622482 intergenic not near genes chr3R 15626254 intergenic not near genes chr3R_11_15620001 chr3R_15620001 RAL-374 1581 chr3R 15715024 15715048 chr3R 15715099 15715151 7 84 1.5 0.5 1.0 3.5 127 chr3R 15715024 intergenic CG31294 - chr3R 15715088 intergenic CG31294 - chr3R 15715151 intergenic CG31294 - chr3R_7_15715001 chr3R_15715001 RAL-374 1582 chr3R 15827596 15827637 chr3R 15827739 15827779 8 137 3.0 4.0 3.5 1.8 183 chr3R 15827596 intron,intron rec -,CG4576 + chr3R 15827688 intron,intron rec -,CG4576 + chr3R 15827779 intron,intron rec -,CG4576 + chr3R_8_15825001 chr3R_15825001 RAL-374 1583 chr3R 15868921 15868942 chr3R 15869020 15869025 5 96 3.0 0.0 1.5 2.0 104 chr3R 15868921 intron CG31183 - chr3R 15868973 intron CG31183 - chr3R 15869025 intron CG31183 - chr3R_5_15865001 chr3R_15865001 RAL-374 1584 chr3R 15878072 15878102 chr3R 15878180 15878210 9 108 2.5 2.0 2.2 2.8 138 chr3R 15878072 intergenic not near genes chr3R 15878141 intergenic not near genes chr3R 15878210 intergenic not near genes chr3R_9_15875001 chr3R_15875001 RAL-374 1585 chr3R 15985252 15985279 chr3R 15985351 15985377 6 99 2.5 2.0 2.2 1.9 125 chr3R 15985252 intergenic not near genes chr3R 15985314 intergenic not near genes chr3R 15985377 intergenic not near genes chr3R_6_15985001 chr3R_15985001 RAL-374 1586 chr3R 16073419 16073458 chr3R 16073543 16073582 6 119 3.0 1.0 2.0 2.0 163 chr3R 16073419 intron Mhcl - chr3R 16073500 intron Mhcl - chr3R 16073582 intron Mhcl - chr3R_6_16070001 chr3R_16070001 RAL-374 1587 chr3R 16225081 16225116 chr3R 16225181 16225221 7 104 4.0 3.0 3.5 1.6 140 chr3R 16225081 intergenic not near genes chr3R 16225151 intergenic tara + chr3R 16225221 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-374 1588 chr3R 16756309 16756333 chr3R 16762511 16762544 diver 6 6205 4.0 1.0 2.5 1.7 6235 chr3R 16756309 intron bxd - chr3R 16759426 intron bxd - chr3R 16762544 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-374 1589 chr3R 16849694 16849737 chr3R 16849817 16849841 6 119 1.0 2.0 1.5 2.4 147 chr3R 16849694 intron iab-8 - chr3R 16849768 intron iab-8 - chr3R 16849841 intron iab-8 - chr3R_6_16845001 chr3R_16845001 RAL-374 1590 chr3R 16860317 16860364 chr3R 16860415 16860462 11 98 1.5 0.0 0.8 6.1 145 chr3R 16860317 intron iab-8 - chr3R 16860390 intron iab-8 - chr3R 16860462 intron iab-8 - chr3R_11_16860001 chr3R_16860001 RAL-374 1591 chr3R 16933282 16933286 chr3R 16933360 16933398 4 102 2.0 2.5 2.2 1.2 116 chr3R 16933282 intron Abd-B - chr3R 16933340 intron Abd-B - chr3R 16933398 intron Abd-B - chr3R_4_16930001 chr3R_16930001 RAL-374 1592 chr3R 17121523 17121555 chr3R 17121738 17121763 7 213 2.5 3.5 3.0 1.8 240 chr3R 17121523 intron cher - chr3R 17121643 intron,exon cher -,CG42779 + chr3R 17121763 intron,exon cher -,CG42779 + chr3R_7_17120001 chr3R_17120001 RAL-374 1593 chr3R 17268656 17268688 chr3R 17268798 17268829 5 142 1.5 2.5 2.0 1.7 173 chr3R 17268656 intergenic not near genes chr3R 17268742 intergenic not near genes chr3R 17268829 intergenic not near genes chr3R_5_17265001 chr3R_17265001 RAL-374 1594 chr3R 17290425 17290469 chr3R 17290531 17290575 4 105 2.0 1.5 1.8 1.4 150 chr3R 17290425 intergenic not near genes chr3R 17290500 intergenic not near genes chr3R 17290575 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-374 1595 chr3R 17294645 17294703 chr3R 17295093 17295153 BS 9 448 0.5 0.0 0.2 7.5 508 chr3R 17294645 intergenic not near genes chr3R 17294899 intergenic not near genes chr3R 17295153 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-374 1596 chr3R 17346672 17346706 chr3R 17348255 17348289 F-element 10 1583 1.5 2.5 2.0 3.3 1617 chr3R 17346672 intron beat-IIa - chr3R 17347480 intron beat-IIa - chr3R 17348289 intron beat-IIa - chr3R_10_17345001 chr3R_17345001 RAL-374 1597 chr3R 17355473 17355519 chr3R 17355567 17355616 10 90 3.0 3.0 3.0 2.5 143 chr3R 17355473 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355616 intron beat-IIa - chr3R_10_17355001 chr3R_17355001 RAL-374 1598 chr3R 17359008 17359058 chr3R 17359105 17359156 9 94 2.0 5.0 3.5 2.0 148 chr3R 17359008 intron beat-IIa - chr3R 17359082 intron beat-IIa - chr3R 17359156 intron beat-IIa - chr3R_9_17355001 chr3R_17355001 RAL-374 1599 chr3R 17394438 17394462 chr3R 17394605 17394641 9 175 2.0 3.0 2.5 2.6 203 chr3R 17394438 intron CREG - chr3R 17394540 5` UTR CREG - chr3R 17394641 intergenic CREG - chr3R_9_17390001 chr3R_17390001 RAL-374 1600 chr3R 17452648 17452698 chr3R 17452744 17452792 5 96 0.0 0.0 0.0 5.0 144 chr3R 17452648 intergenic not near genes chr3R 17452720 intergenic not near genes chr3R 17452792 intergenic not near genes chr3R_5_17450001 chr3R_17450001 RAL-374 1601 chr3R 17461180 17461221 chr3R 17461282 17461323 4 102 4.0 2.5 3.2 1.0 143 chr3R 17461180 intergenic not near genes chr3R 17461252 intergenic not near genes chr3R 17461323 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-374 1602 chr3R 17497947 17497983 chr3R 17498053 17498089 8 106 2.5 3.5 3.0 2.0 142 chr3R 17497947 intron Dscam3 - chr3R 17498018 intron Dscam3 - chr3R 17498089 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-374 1603 chr3R 17500614 17500635 chr3R 17501196 17501211 7 578 2.0 5.5 3.8 1.5 597 chr3R 17500614 intron Dscam3 - chr3R 17500912 intron Dscam3 - chr3R 17501211 intron Dscam3 - chr3R_7_17500001 chr3R_17500001 RAL-374 1604 chr3R 17647231 17647266 chr3R 17647348 17647383 7 117 2.0 1.0 1.5 2.8 152 chr3R 17647231 intergenic CG14322 + chr3R 17647307 intergenic CG14322 + chr3R 17647383 intergenic CG14322 + chr3R_7_17645001 chr3R_17645001 RAL-374 1605 chr3R 17655443 17655479 chr3R 17655556 17655594 5 115 1.5 2.0 1.8 1.8 151 chr3R 17655443 intron CG14322 + chr3R 17655518 intron CG14322 + chr3R 17655594 intron CG14322 + chr3R_5_17655001 chr3R_17655001 RAL-374 1606 chr3R 17678596 17678615 chr3R 17678978 17679022 4 399 3.5 2.0 2.8 1.1 426 chr3R 17678596 intron alt - chr3R 17678809 intron alt - chr3R 17679022 intron alt - chr3R_4_17675001 chr3R_17675001 RAL-374 1607 chr3R 17725055 17725072 chr3R 17725169 17725186 5 114 1.5 0.0 0.8 2.8 131 chr3R 17725055 intergenic Atg8b - chr3R 17725120 intergenic Atg8b - chr3R 17725186 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 RAL-374 1608 chr3R 17734830 17734851 chr3R 17734964 17734985 5 134 1.0 0.0 0.5 3.3 155 chr3R 17734830 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17734985 intergenic not near genes chr3R_5_17730001 chr3R_17730001 RAL-374 1609 chr3R 17823181 17823222 chr3R 17823278 17823319 7 94 2.5 6.0 4.2 1.3 138 chr3R 17823181 intron tinc + chr3R 17823250 intron tinc + chr3R 17823319 intron tinc + chr3R_7_17820001 chr3R_17820001 RAL-374 1610 chr3R 17925847 17925880 chr3R 17927331 17927335 hobo 7 1481 3.0 6.0 4.5 1.3 1488 chr3R 17925847 intron cpo + chr3R 17926591 intron cpo + chr3R 17927335 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-374 1611 chr3R 17964204 17964259 chr3R 17964330 17964356 5 120 2.0 2.5 2.2 1.6 152 chr3R 17964204 intron cpo + chr3R 17964280 intron cpo + chr3R 17964356 intron cpo + chr3R_5_17960001 chr3R_17960001 RAL-374 1612 chr3R 18003018 18003038 chr3R 18003134 18003154 4 114 7.0 0.0 3.5 0.9 136 chr3R 18003018 intron cpo + chr3R 18003086 intron cpo + chr3R 18003154 intron cpo + chr3R_4_18000001 chr3R_18000001 RAL-374 1613 chr3R 18041738 18041765 chr3R 18041834 18041862 5 97 0.5 0.0 0.2 4.2 124 chr3R 18041738 intergenic not near genes chr3R 18041800 intergenic not near genes chr3R 18041862 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-374 1614 chr3R 18136214 18136251 chr3R 18136348 18136385 5 134 1.0 1.0 1.0 2.5 171 chr3R 18136214 intergenic not near genes chr3R 18136300 intergenic not near genes chr3R 18136385 intergenic not near genes chr3R_5_18135001 chr3R_18135001 RAL-374 1615 chr3R 18303691 18303716 chr3R 18303777 18303794 5 85 1.0 2.0 1.5 2.0 103 chr3R 18303691 3` UTR PKD - chr3R 18303742 3` UTR PKD - chr3R 18303794 3` UTR PKD - chr3R_5_18300001 chr3R_18300001 RAL-374 1616 chr3R 18485310 18485351 chr3R 18485430 18485471 4 118 0.0 1.5 0.8 2.2 161 chr3R 18485310 intron fru - chr3R 18485390 intron fru - chr3R 18485471 intron fru - chr3R_4_18485001 chr3R_18485001 RAL-374 1617 chr3R 18501593 18501625 chr3R 18501694 18501723 12 101 2.5 6.5 4.5 2.2 130 chr3R 18501593 intron fru - chr3R 18501658 intron fru - chr3R 18501723 intron fru - chr3R_12_18500001 chr3R_18500001 RAL-374 1618 chr3R 18528358 18528392 chr3R 18528464 18528489 5 104 5.0 2.5 3.8 1.0 131 chr3R 18528358 intron fru - chr3R 18528424 intron fru - chr3R 18528489 intron fru - chr3R_5_18525001 chr3R_18525001 RAL-374 1619 chr3R 18559414 18559536 chr3R 18559510 18559652 7 110 0.0 0.0 0.0 7.0 238 chr3R 18559414 intergenic CG7691 + chr3R 18559533 intergenic CG7691 + chr3R 18559652 intergenic CG7691 + chr3R_7_18555001 chr3R_18555001 RAL-374 1620 chr3R 18579558 18579588 chr3R 18579655 18579671 4 92 1.0 0.0 0.5 2.7 113 chr3R 18579558 intron,intron CG7694 +,fray + chr3R 18579614 intron,intron CG7694 +,fray + chr3R 18579671 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-374 1621 chr3R 18606484 18606522 chr3R 18610736 18610774 F-element 9 4252 3.0 2.5 2.8 2.4 4290 chr3R 18606484 intron,intron qin +,CG14304 - chr3R 18608629 intron,intron qin +,CG14304 - chr3R 18610774 intron,intron qin +,CG14304 - chr3R_9_18605001 chr3R_18605001 RAL-374 1622 chr3R 18616671 18616685 chr3R 18616791 18616805 4 120 2.5 5.0 3.8 0.8 134 chr3R 18616671 intron,intron qin +,CG14304 - chr3R 18616738 intron,intron qin +,CG14304 - chr3R 18616805 intron,intron,3` UTR qin +,CG14304 -,CG7695 - chr3R_4_18615001 chr3R_18615001 RAL-374 1623 chr3R 18622764 18622809 chr3R 18622859 18622905 7 90 0.5 0.0 0.2 5.8 141 chr3R 18622764 intron qin + chr3R 18622834 intron qin + chr3R 18622905 intron qin + chr3R_7_18620001 chr3R_18620001 RAL-374 1624 chr3R 18695741 18695746 chr3R 18695847 18695852 4 106 7.5 0.0 3.8 0.8 111 chr3R 18695741 3` UTR CG34282 + chr3R 18695796 intergenic CG34282 + chr3R 18695852 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-374 1625 chr3R 18697332 18697545 chr3R 18697432 18697729 14 166 0.0 1.5 0.8 7.8 397 chr3R 18697332 intergenic not near genes chr3R 18697530 intergenic not near genes chr3R 18697729 intergenic not near genes chr3R_14_18695001 chr3R_18695001 RAL-374 1626 chr3R 18802119 18802154 chr3R 18802223 18802259 14 105 3.0 5.0 4.0 2.8 140 chr3R 18802119 3` UTR CG18208 - chr3R 18802189 3` UTR CG18208 - chr3R 18802259 3` UTR CG18208 - chr3R_14_18800001 chr3R_18800001 RAL-374 1627 chr3R 18807317 18807322 chr3R 18807412 18807416 4 95 1.5 0.0 0.8 2.2 99 chr3R 18807317 intron CG18208 - chr3R 18807366 intron CG18208 - chr3R 18807416 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-374 1628 chr3R 18812060 18812104 chr3R 18812158 18812202 6 97 2.0 4.0 3.0 1.5 142 chr3R 18812060 intron CG18208 - chr3R 18812131 intron CG18208 - chr3R 18812202 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-374 1629 chr3R 18860119 18860156 chr3R 18860225 18860238 4 99 1.5 1.0 1.2 1.8 119 chr3R 18860119 intergenic not near genes chr3R 18860178 intergenic not near genes chr3R 18860238 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-374 1630 chr3R 18887581 18887595 chr3R 18887682 18887695 5 101 4.5 3.0 3.8 1.0 114 chr3R 18887581 intergenic not near genes chr3R 18887638 intergenic not near genes chr3R 18887695 intergenic not near genes chr3R_5_18885001 chr3R_18885001 RAL-374 1631 chr3R 18965194 18965237 chr3R 18965406 18965419 8 208 0.5 6.0 3.2 1.9 225 chr3R 18965194 intron,intron CG42613 +,CG43732 + chr3R 18965306 intron,intron CG42613 +,CG43732 + chr3R 18965419 intron,intron CG42613 +,CG43732 + chr3R_8_18965001 chr3R_18965001 RAL-374 1632 chr3R 19014070 19014081 chr3R 19014170 19014180 4 98 6.0 1.5 3.8 0.8 110 chr3R 19014070 intron gukh + chr3R 19014125 intron gukh + chr3R 19014180 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-374 1633 chr3R 19014086 19014122 chr3R 19014168 19014218 9 89 1.5 1.5 1.5 3.6 132 chr3R 19014086 intron gukh + chr3R 19014152 intron gukh + chr3R 19014218 intron gukh + chr3R_9_19010001 chr3R_19010001 RAL-374 1634 chr3R 19120134 19120182 chr3R 19120235 19120283 8 95 1.5 1.0 1.2 3.6 149 chr3R 19120134 intron CG6040 + chr3R 19120208 intron CG6040 + chr3R 19120283 intron CG6040 + chr3R_8_19120001 chr3R_19120001 RAL-374 1635 chr3R 19140252 19140299 chr3R 19140718 19140750 12 458 1.0 1.5 1.2 5.5 498 chr3R 19140252 3` UTR Ppcs - chr3R 19140501 3` UTR Ppcs - chr3R 19140750 3` UTR Ppcs - chr3R_12_19140001 chr3R_19140001 RAL-374 1636 chr3R 19276910 19276917 chr3R 19277010 19277017 4 100 7.5 1.0 4.2 0.8 107 chr3R 19276910 intergenic not near genes chr3R 19276964 intergenic not near genes chr3R 19277017 intergenic not near genes chr3R_4_19275001 chr3R_19275001 RAL-374 1637 chr3R 19290534 19290565 chr3R 19290630 19290661 4 95 1.0 2.0 1.5 1.6 127 chr3R 19290534 intergenic not near genes chr3R 19290598 intergenic not near genes chr3R 19290661 intergenic not near genes chr3R_4_19290001 chr3R_19290001 RAL-374 1638 chr3R 19340375 19340425 chr3R 19340472 19340522 10 95 4.0 1.5 2.8 2.6 147 chr3R 19340375 intergenic not near genes chr3R 19340448 intergenic not near genes chr3R 19340522 intergenic not near genes chr3R_10_19340001 chr3R_19340001 RAL-374 1639 chr3R 19418399 19418426 chr3R 19418511 19418538 7 112 4.0 0.0 2.0 2.3 139 chr3R 19418399 intron CG31221 + chr3R 19418468 intron CG31221 + chr3R 19418538 intron CG31221 + chr3R_7_19415001 chr3R_19415001 RAL-374 1640 chr3R 19435497 19435543 chr3R 19435793 19435814 10 293 3.0 4.5 3.8 2.1 317 chr3R 19435497 intron CG31221 + chr3R 19435656 intron CG31221 + chr3R 19435814 intron CG31221 + chr3R_10_19435001 chr3R_19435001 RAL-374 1641 chr3R 19453832 19453869 chr3R 19454001 19454039 4 168 1.0 0.5 0.8 2.2 207 chr3R 19453832 intron CG31221 + chr3R 19453936 intron CG31221 + chr3R 19454039 intron CG31221 + chr3R_4_19450001 chr3R_19450001 RAL-374 1642 chr3R 19466163 19466206 chr3R 19467982 19468025 8 1819 18.0 14.0 16.0 0.5 1862 chr3R 19466163 intron Dys + chr3R 19467094 intron Dys + chr3R 19468025 intron Dys + chr3R_8_19465001 chr3R_19465001 RAL-374 1643 chr3R 19502182 19502222 chr3R 19502279 19502319 6 97 2.5 4.0 3.2 1.4 137 chr3R 19502182 intron Dys + chr3R 19502250 intron Dys + chr3R 19502319 intron Dys + chr3R_6_19500001 chr3R_19500001 RAL-374 1644 chr3R 19532203 19532240 chr3R 19532298 19532336 11 95 3.0 3.5 3.2 2.6 133 chr3R 19532203 intron Dys + chr3R 19532270 intron Dys + chr3R 19532336 intron Dys + chr3R_11_19530001 chr3R_19530001 RAL-374 1645 chr3R 19590627 19590682 chr3R 19590739 19590764 7 108 0.0 2.5 1.2 3.2 137 chr3R 19590627 exon Dys + chr3R 19590696 intron Dys + chr3R 19590764 exon Dys + chr3R_7_19590001 chr3R_19590001 RAL-374 1646 chr3R 19602737 19602782 chr3R 19602835 19602880 5 98 4.0 0.5 2.2 1.6 143 chr3R 19602737 intergenic CG7333 + chr3R 19602808 intergenic CG7333 + chr3R 19602880 intergenic CG7333 +,CG7342 + chr3R_5_19600001 chr3R_19600001 RAL-374 1647 chr3R 19702302 19702354 chr3R 19702404 19702456 13 98 2.0 4.5 3.2 3.1 154 chr3R 19702302 intergenic not near genes chr3R 19702379 intergenic not near genes chr3R 19702456 intergenic not near genes chr3R_13_19700001 chr3R_19700001 RAL-374 1648 chr3R 19943872 19943883 chr3R 19943972 19943981 6 98 4.5 0.0 2.2 1.9 109 chr3R 19943872 intron Hs6st - chr3R 19943926 intron Hs6st - chr3R 19943981 intron Hs6st - chr3R_6_19940001 chr3R_19940001 RAL-374 1649 chr3R 19950015 19950061 chr3R 19950112 19950159 11 97 1.0 1.5 1.2 5.0 144 chr3R 19950015 intron Hs6st - chr3R 19950087 intron Hs6st - chr3R 19950159 intron Hs6st - chr3R_11_19950001 chr3R_19950001 RAL-374 1650 chr3R 20008808 20008856 chr3R 20008909 20008955 11 99 0.0 5.0 2.5 3.1 147 chr3R 20008808 intergenic MED25 +,Hs6st - chr3R 20008882 intergenic MED25 +,Hs6st - chr3R 20008955 5` UTR MED25 + chr3R_11_20005001 chr3R_20005001 RAL-374 1651 chr3R 20060614 20060657 chr3R 20060716 20060760 6 103 3.5 1.5 2.5 1.7 146 chr3R 20060614 intergenic not near genes chr3R 20060687 intergenic not near genes chr3R 20060760 intergenic not near genes chr3R_6_20060001 chr3R_20060001 RAL-374 1652 chr3R 20077018 20077069 chr3R 20077124 20077175 4 103 2.0 2.0 2.0 1.3 157 chr3R 20077018 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077175 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-374 1653 chr3R 20124557 20124588 chr3R 20124664 20124695 5 107 4.0 2.0 3.0 1.2 138 chr3R 20124557 intergenic not near genes chr3R 20124626 intergenic not near genes chr3R 20124695 intergenic not near genes chr3R_5_20120001 chr3R_20120001 RAL-374 1654 chr3R 20137191 20137225 chr3R 20137321 20137355 8 134 1.0 1.5 1.2 3.6 164 chr3R 20137191 intergenic not near genes chr3R 20137273 intergenic not near genes chr3R 20137355 intergenic not near genes chr3R_8_20135001 chr3R_20135001 RAL-374 1655 chr3R 20149592 20149636 chr3R 20151692 20151739 11 2100 13.0 17.5 15.2 0.7 2147 chr3R 20149592 intergenic not near genes chr3R 20150666 intergenic not near genes chr3R 20151739 intergenic not near genes chr3R_11_20150001 chr3R_20150001 RAL-374 1656 chr3R 20156681 20156714 chr3R 20165869 20165904 roo 5 9189 2.0 3.5 2.8 1.3 9223 chr3R 20156681 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165904 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-374 1657 chr3R 20180705 20180717 chr3R 20180810 20180822 6 104 2.0 4.5 3.2 1.4 117 chr3R 20180705 intergenic not near genes chr3R 20180764 intergenic not near genes chr3R 20180822 intergenic not near genes chr3R_6_20180001 chr3R_20180001 RAL-374 1658 chr3R 20195670 20195716 chr3R 20195767 20195812 12 96 2.5 3.5 3.0 3.0 142 chr3R 20195670 intergenic not near genes chr3R 20195741 intergenic not near genes chr3R 20195812 intergenic not near genes chr3R_12_20195001 chr3R_20195001 RAL-374 1659 chr3R 20205550 20205596 chr3R 20205692 20205738 5 142 1.5 0.5 1.0 2.5 188 chr3R 20205550 intron Nlg4 + chr3R 20205644 intron Nlg4 + chr3R 20205738 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-374 1660 chr3R 20266504 20266546 chr3R 20272995 20273036 Burdock 10 6491 0.5 3.0 1.8 3.6 6532 chr3R 20266504 intron cic + chr3R 20269770 intron cic + chr3R 20273036 intron cic + chr3R_10_20265001 chr3R_20265001 RAL-374 1661 chr3R 20308173 20308214 chr3R 20308280 20308333 5 112 3.0 0.0 1.5 2.0 160 chr3R 20308173 intergenic not near genes chr3R 20308253 intergenic not near genes chr3R 20308333 intergenic not near genes chr3R_5_20305001 chr3R_20305001 RAL-374 1662 chr3R 20312838 20312883 chr3R 20312944 20312989 8 105 2.0 2.5 2.2 2.5 151 chr3R 20312838 intron CG42668 + chr3R 20312914 intron CG42668 + chr3R 20312989 intron CG42668 + chr3R_8_20310001 chr3R_20310001 RAL-374 1663 chr3R 20330988 20331023 chr3R 20331494 20331529 roo 5 506 3.5 2.0 2.8 1.3 541 chr3R 20330988 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331529 intergenic not near genes chr3R_5_20330001 chr3R_20330001 RAL-374 1664 chr3R 20406471 20406511 chr3R 20406590 20406630 8 118 1.5 0.5 1.0 4.0 159 chr3R 20406471 intron Gfrl - chr3R 20406550 intron Gfrl - chr3R 20406630 intron,3` UTR Gfrl -,CG4335 - chr3R_8_20405001 chr3R_20405001 RAL-374 1665 chr3R 20411199 20411245 chr3R 20411434 20411479 8 235 2.0 3.0 2.5 2.3 280 chr3R 20411199 exon Gfrl - chr3R 20411339 intron Gfrl - chr3R 20411479 intron Gfrl - chr3R_8_20410001 chr3R_20410001 RAL-374 1666 chr3R 20433084 20433128 chr3R 20433194 20433238 5 110 1.0 1.5 1.2 2.3 154 chr3R 20433084 intron Gfrl - chr3R 20433161 intron Gfrl - chr3R 20433238 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-374 1667 chr3R 20499852 20499894 chr3R 20499962 20500003 4 110 5.0 1.0 3.0 1.0 151 chr3R 20499852 intergenic Dic2 - chr3R 20499928 intergenic Dic2 - chr3R 20500003 3` UTR Dic2 - chr3R_4_20495001 chr3R_20495001 RAL-374 1668 chr3R 20516527 20516560 chr3R 20516902 20516936 8 376 3.0 4.0 3.5 1.8 409 chr3R 20516527 intergenic not near genes chr3R 20516732 intergenic not near genes chr3R 20516936 intergenic not near genes chr3R_8_20515001 chr3R_20515001 RAL-374 1669 chr3R 20595597 20595639 chr3R 20595827 20595869 5 230 2.0 2.0 2.0 1.7 272 chr3R 20595597 intron bon + chr3R 20595733 intron bon + chr3R 20595869 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-374 1670 chr3R 20686943 20686990 chr3R 20687397 20687441 11 451 1.0 3.5 2.2 3.4 498 chr3R 20686943 intergenic not near genes chr3R 20687192 intergenic not near genes chr3R 20687441 intergenic not near genes chr3R_11_20685001 chr3R_20685001 RAL-374 1671 chr3R 20703462 20703512 chr3R 20703876 20703903 10 412 1.0 1.5 1.2 4.5 441 chr3R 20703462 intron Oamb - chr3R 20703682 intron Oamb - chr3R 20703903 intron Oamb - chr3R_10_20700001 chr3R_20700001 RAL-374 1672 chr3R 20707725 20707767 chr3R 20707959 20708002 7 234 3.0 1.0 2.0 2.3 277 chr3R 20707725 intron Oamb - chr3R 20707864 intron Oamb - chr3R 20708002 intron Oamb - chr3R_7_20705001 chr3R_20705001 RAL-374 1673 chr3R 20722832 20722885 chr3R 20722979 20723032 12 135 2.0 1.0 1.5 4.8 200 chr3R 20722832 intergenic not near genes chr3R 20722932 intergenic not near genes chr3R 20723032 intergenic not near genes chr3R_12_20720001 chr3R_20720001 RAL-374 1674 chr3R 20724498 20724515 chr3R 20724589 20724605 5 100 3.5 5.5 4.5 0.9 107 chr3R 20724498 intergenic not near genes chr3R 20724552 intergenic not near genes chr3R 20724605 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-374 1675 chr3R 20794861 20794895 chr3R 20794960 20795001 5 105 2.0 2.0 2.0 1.7 140 chr3R 20794861 intron Syp + chr3R 20794931 intron Syp + chr3R 20795001 intron Syp + chr3R_5_20790001 chr3R_20790001 RAL-374 1676 chr3R 20824799 20824848 chr3R 20824895 20824944 6 96 0.0 0.0 0.0 6.0 145 chr3R 20824799 3` UTR AdSS - chr3R 20824872 3` UTR AdSS - chr3R 20824944 3` UTR AdSS - chr3R_6_20820001 chr3R_20820001 RAL-374 1677 chr3R 20854469 20854501 chr3R 20859273 20859284 Doc 7 4800 7.0 3.0 5.0 1.2 4815 chr3R 20854469 intron Ir93a - chr3R 20856876 intron Ir93a - chr3R 20859284 exon Ir93a - chr3R_7_20855001 chr3R_20855001 RAL-374 1678 chr3R 20854510 20854517 chr3R 20859269 20859276 Doc 4 4764 6.0 2.5 4.2 0.8 4766 chr3R 20854510 intron Ir93a - chr3R 20856893 intron Ir93a - chr3R 20859276 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-374 1679 chr3R 20874508 20874542 chr3R 20874613 20874647 6 105 3.0 4.5 3.8 1.2 139 chr3R 20874508 3` UTR TotB + chr3R 20874578 intergenic TotB + chr3R 20874647 intergenic TotB + chr3R_6_20870001 chr3R_20870001 RAL-374 1680 chr3R 21014002 21014038 chr3R 21014100 21014136 10 97 3.0 3.5 3.2 2.4 134 chr3R 21014002 3` UTR Calx + chr3R 21014069 3` UTR Calx + chr3R 21014136 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-374 1681 chr3R 21186009 21186054 chr3R 21186128 21186174 7 120 3.0 1.5 2.2 2.2 165 chr3R 21186009 intron SNF4Agamma + chr3R 21186092 intron SNF4Agamma + chr3R 21186174 intron SNF4Agamma + chr3R_7_21185001 chr3R_21185001 RAL-374 1682 chr3R 21239790 21239958 chr3R 21239904 21240054 10 98 0.0 0.0 0.0 10.0 264 chr3R 21239790 intergenic not near genes chr3R 21239922 intergenic not near genes chr3R 21240054 intergenic not near genes chr3R_10_21235001 chr3R_21235001 RAL-374 1683 chr3R 21287650 21287670 chr3R 21288004 21288025 5 359 2.0 1.0 1.5 2.0 375 chr3R 21287650 intron SIFaR - chr3R 21287838 intron SIFaR - chr3R 21288025 intron SIFaR - chr3R_5_21285001 chr3R_21285001 RAL-374 1684 chr3R 21322954 21322981 chr3R 21323053 21323068 4 96 1.5 0.5 1.0 2.0 114 chr3R 21322954 exon CG16791 - chr3R 21323011 intron CG16791 - chr3R 21323068 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-374 1685 chr3R 21330780 21330831 chr3R 21330890 21330906 7 103 1.5 2.0 1.8 2.5 126 chr3R 21330780 intron CG16791 - chr3R 21330843 intron CG16791 - chr3R 21330906 intron CG16791 - chr3R_7_21330001 chr3R_21330001 RAL-374 1686 chr3R 21472000 21472040 chr3R 21472098 21472098 5 92 2.5 2.0 2.2 1.6 98 chr3R 21472000 intergenic not near genes chr3R 21472049 intergenic not near genes chr3R 21472098 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-374 1687 chr3R 21494662 21494719 chr3R 21494762 21494819 8 100 3.0 1.5 2.2 2.5 157 chr3R 21494662 intergenic not near genes chr3R 21494740 intergenic not near genes chr3R 21494819 intergenic not near genes chr3R_8_21490001 chr3R_21490001 RAL-374 1688 chr3R 21505204 21505254 chr3R 21505306 21505338 10 98 2.0 3.0 2.5 2.9 134 chr3R 21505204 intron C15 + chr3R 21505271 intron C15 + chr3R 21505338 intron C15 + chr3R_10_21505001 chr3R_21505001 RAL-374 1689 chr3R 21518006 21518271 chr3R 21518155 21518375 5 119 0.0 0.0 0.0 5.0 369 chr3R 21518006 intergenic not near genes chr3R 21518190 intergenic not near genes chr3R 21518375 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-374 1690 chr3R 21519975 21520136 chr3R 21520096 21520250 7 112 0.0 0.0 0.0 7.0 275 chr3R 21519975 intergenic not near genes chr3R 21520112 intergenic not near genes chr3R 21520250 intergenic not near genes chr3R_7_21520001 chr3R_21520001 RAL-374 1691 chr3R 21761107 21761154 chr3R 21768517 21768540 mdg1 10 7402 1.5 3.0 2.2 3.1 7433 chr3R 21761107 exon CG42335 + chr3R 21764824 intron CG42335 + chr3R 21768540 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-374 1692 chr3R 21790943 21790950 chr3R 21791048 21791055 5 105 7.5 2.0 4.8 0.9 112 chr3R 21790943 intron CASK - chr3R 21790999 intron CASK - chr3R 21791055 intron CASK - chr3R_5_21790001 chr3R_21790001 RAL-374 1693 chr3R 21790954 21790983 chr3R 21791043 21791085 7 101 4.5 1.5 3.0 1.8 131 chr3R 21790954 intron CASK - chr3R 21791020 intron CASK - chr3R 21791085 intron CASK - chr3R_7_21790001 chr3R_21790001 RAL-374 1694 chr3R 17389054 17389054 chr3R 21907534 21907534 5 4518480 6.5 12.0 9.2 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-374 1695 chr3R 21337429 21337429 chr3R 21907534 21907534 6 570105 4.5 12.0 8.2 0.7 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-374 1696 chr3R 21907534 21907534 chr3R 26659333 26659335 4 4751800 15.0 10.5 12.8 0.3 4751801 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-374 1697 chr3R 21907534 21907534 chr3R 28831799 28831802 9 6924268 15.0 6.5 10.8 0.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_9_25365001 chr3R_25365001 RAL-374 1698 chr3R 21907535 21907535 chr3R 28831801 28831802 11 6924267 15.5 6.5 11.0 0.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-374 1699 chr3R 21907536 21907536 chr3R 28831801 28831802 10 6924266 15.5 6.5 11.0 0.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-374 1700 chr3R 21937211 21937228 chr3R 21937308 21937324 4 96 0.5 5.0 2.8 1.1 113 chr3R 21937211 intergenic not near genes chr3R 21937268 intergenic not near genes chr3R 21937324 intergenic not near genes chr3R_4_21935001 chr3R_21935001 RAL-374 1701 chr3R 21952126 21952166 chr3R 21952231 21952271 9 105 3.5 3.5 3.5 2.0 145 chr3R 21952126 intron Eip93F + chr3R 21952198 intron Eip93F + chr3R 21952271 intron Eip93F + chr3R_9_21950001 chr3R_21950001 RAL-374 1702 chr3R 21958586 21958636 chr3R 21958695 21958746 14 107 1.5 1.5 1.5 5.6 160 chr3R 21958586 intron Eip93F + chr3R 21958666 intron Eip93F + chr3R 21958746 intron Eip93F + chr3R_14_21955001 chr3R_21955001 RAL-374 1703 chr3R 22084613 22084625 chr3R 22084721 22084733 6 109 2.5 5.0 3.8 1.2 120 chr3R 22084613 intergenic not near genes chr3R 22084673 intergenic not near genes chr3R 22084733 intergenic not near genes chr3R_6_22080001 chr3R_22080001 RAL-374 1704 chr3R 22116392 22116419 chr3R 22116778 22116806 5 387 3.0 3.0 3.0 1.2 414 chr3R 22116392 exon Ir94b - chr3R 22116599 exon Ir94b - chr3R 22116806 exon Ir94b - chr3R_5_22115001 chr3R_22115001 RAL-374 1705 chr3R 22117400 22117448 chr3R 22117494 22117544 7 96 2.0 2.5 2.2 2.2 144 chr3R 22117400 intergenic Ir94b -,Ir94c - chr3R 22117472 intergenic Ir94c -,Ir94b - chr3R 22117544 intergenic Ir94c -,Ir94b - chr3R_7_22115001 chr3R_22115001 RAL-374 1706 chr3R 22234673 22234709 chr3R 22236012 22236048 pogo 7 1336 0.5 1.5 1.0 3.5 1375 chr3R 22234673 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236048 intron SKIP + chr3R_7_22235001 chr3R_22235001 RAL-374 1707 chr3R 22239471 22239512 chr3R 22248551 22248592 roo 10 9080 2.5 4.5 3.5 2.2 9121 chr3R 22239471 intron SKIP + chr3R 22244032 intron SKIP + chr3R 22248592 intron SKIP + chr3R_10_22240001 chr3R_22240001 RAL-374 1708 chr3R 22292457 22292497 chr3R 22292557 22292597 6 99 2.0 1.5 1.8 2.1 140 chr3R 22292457 exon SKIP + chr3R 22292527 intron SKIP + chr3R 22292597 intron SKIP + chr3R_6_22290001 chr3R_22290001 RAL-374 1709 chr3R 22428556 22428608 chr3R 22428652 22428704 8 91 1.5 2.5 2.0 2.7 148 chr3R 22428556 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428704 intron CG13847 - chr3R_8_22425001 chr3R_22425001 RAL-374 1710 chr3R 22450527 22450573 chr3R 22453187 22453223 NOF 9 2653 4.0 3.5 3.8 1.9 2696 chr3R 22450527 intron CG34376 + chr3R 22451875 intron CG34376 + chr3R 22453223 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-374 1711 chr3R 22492377 22492412 chr3R 22492463 22492501 10 98 2.0 2.5 2.2 3.1 124 chr3R 22492377 3` UTR CG7045 + chr3R 22492439 intergenic CG7045 + chr3R 22492501 intergenic CG7045 +,CG7046 + chr3R_10_22490001 chr3R_22490001 RAL-374 1712 chr3R 22538424 22538467 chr3R 22538529 22538559 11 102 3.0 0.5 1.8 3.9 135 chr3R 22538424 intron CG5326 - chr3R 22538492 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_11_22535001 chr3R_22535001 RAL-374 1713 chr3R 22646923 22646952 chr3R 22647031 22647060 5 108 2.0 0.0 1.0 2.5 137 chr3R 22646923 intron wake + chr3R 22646992 intron wake + chr3R 22647060 intron wake + chr3R_5_22645001 chr3R_22645001 RAL-374 1714 chr3R 22794277 22794300 chr3R 22794523 22794546 4 246 1.0 3.5 2.2 1.2 269 chr3R 22794277 intergenic CG7029 + chr3R 22794412 intergenic CG7029 + chr3R 22794546 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-374 1715 chr3R 22797745 22797931 chr3R 22797851 22798047 8 110 0.0 0.0 0.0 8.0 302 chr3R 22797745 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798047 intergenic not near genes chr3R_8_22795001 chr3R_22795001 RAL-374 1716 chr3R 22860136 22860174 chr3R 22860247 22860284 10 110 0.0 0.0 0.0 10.0 148 chr3R 22860136 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860284 intergenic not near genes chr3R_10_22860001 chr3R_22860001 RAL-374 1717 chr3R 22888178 22888215 chr3R 22888470 22888480 5 275 4.0 0.0 2.0 1.7 302 chr3R 22888178 intergenic not near genes chr3R 22888329 intergenic not near genes chr3R 22888480 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-374 1718 chr3R 22927850 22927897 chr3R 22927965 22928011 9 112 1.0 2.5 1.8 3.2 161 chr3R 22927850 intron klg + chr3R 22927930 intron klg + chr3R 22928011 intron klg + chr3R_9_22925001 chr3R_22925001 RAL-374 1719 chr3R 23016207 23016228 chr3R 23016289 23016299 4 85 2.0 1.5 1.8 1.4 92 chr3R 23016207 intergenic not near genes chr3R 23016253 intergenic not near genes chr3R 23016299 intergenic not near genes chr3R_4_23015001 chr3R_23015001 RAL-374 1720 chr3R 23180164 23180215 chr3R 23180267 23180316 13 102 6.5 2.5 4.5 2.4 152 chr3R 23180164 intron Irk1 + chr3R 23180240 intron Irk1 + chr3R 23180316 intron Irk1 + chr3R_13_23180001 chr3R_23180001 RAL-374 1721 chr3R 23182670 23182706 chr3R 23182772 23182809 8 102 1.5 3.5 2.5 2.3 139 chr3R 23182670 intron Irk1 + chr3R 23182740 intron Irk1 + chr3R 23182809 intron Irk1 + chr3R_8_23180001 chr3R_23180001 RAL-374 1722 chr3R 23211965 23211981 chr3R 23212063 23212079 4 98 1.0 1.5 1.2 1.8 114 chr3R 23211965 intron cnc - chr3R 23212022 intron cnc - chr3R 23212079 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-374 1723 chr3R 23214215 23214232 chr3R 23214320 23214336 4 105 2.0 0.5 1.2 1.8 121 chr3R 23214215 intron cnc - chr3R 23214276 intron cnc - chr3R 23214336 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-374 1724 chr3R 23277328 23277369 chr3R 23277438 23277479 10 108 2.0 3.5 2.8 2.6 151 chr3R 23277328 intron orb - chr3R 23277404 intron orb - chr3R 23277479 intron orb - chr3R_10_23275001 chr3R_23275001 RAL-374 1725 chr3R 23303624 23303659 chr3R 23303722 23303757 5 98 0.5 1.5 1.0 2.5 133 chr3R 23303624 intron pnt - chr3R 23303690 intron pnt - chr3R 23303757 intron pnt - chr3R_5_23300001 chr3R_23300001 RAL-374 1726 chr3R 23311668 23311707 chr3R 23311781 23311821 6 107 2.5 3.0 2.8 1.6 153 chr3R 23311668 intron pnt - chr3R 23311744 intron pnt - chr3R 23311821 intron pnt - chr3R_6_23310001 chr3R_23310001 RAL-374 1727 chr3R 23342622 23342668 chr3R 23342777 23342823 8 155 3.5 0.5 2.0 2.7 201 chr3R 23342622 intron pnt - chr3R 23342722 intron pnt - chr3R 23342823 intron pnt - chr3R_8_23340001 chr3R_23340001 RAL-374 1728 chr3R 23533520 23533543 chr3R 23533620 23533644 6 104 10.0 11.5 10.8 0.5 124 chr3R 23533520 exon CG10170 - chr3R 23533582 exon CG10170 - chr3R 23533644 exon CG10170 - chr3R_6_23530001 chr3R_23530001 RAL-374 1729 chr3R 23558388 23558419 chr3R 23560189 23560220 Bari1 8 1801 2.5 3.5 3.0 2.0 1832 chr3R 23558388 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560220 intron beat-IV + chr3R_8_23555001 chr3R_23555001 RAL-374 1730 chr3R 23564420 23564475 chr3R 23564584 23564639 8 164 0.5 1.0 0.8 4.4 219 chr3R 23564420 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564639 intron beat-IV + chr3R_8_23560001 chr3R_23560001 RAL-374 1731 chr3R 23572753 23572772 chr3R 23572874 23572912 4 128 1.5 1.5 1.5 1.6 159 chr3R 23572753 intron beat-IV + chr3R 23572832 intron beat-IV + chr3R 23572912 intron beat-IV + chr3R_4_23570001 chr3R_23570001 RAL-374 1732 chr3R 23591416 23591437 chr3R 23591552 23591572 4 136 1.5 0.5 1.0 2.0 156 chr3R 23591416 exon CG33337 - chr3R 23591494 intron CG33337 - chr3R 23591572 exon CG33337 - chr3R_4_23590001 chr3R_23590001 RAL-374 1733 chr3R 23608579 23608606 chr3R 23608698 23608732 7 121 1.5 1.0 1.2 3.2 153 chr3R 23608579 intron CG31145 - chr3R 23608656 intron CG31145 - chr3R 23608732 exon CG31145 - chr3R_7_23605001 chr3R_23605001 RAL-374 1734 chr3R 23714699 23714733 chr3R 23714806 23714847 8 113 3.0 1.0 2.0 2.7 148 chr3R 23714699 intron nau - chr3R 23714773 intron nau - chr3R 23714847 intron nau - chr3R_8_23710001 chr3R_23710001 RAL-374 1735 chr3R 23820635 23820666 chr3R 23820739 23820767 5 103 1.0 3.5 2.2 1.6 132 chr3R 23820635 5` UTR CG34355 + chr3R 23820701 5` UTR CG34355 + chr3R 23820767 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-374 1736 chr3R 23835389 23835424 chr3R 23844559 23844594 roo 5 9168 2.0 3.0 2.5 1.4 9205 chr3R 23835389 intron CG34355 + chr3R 23839992 intron CG34355 + chr3R 23844594 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-374 1737 chr3R 23944895 23944926 chr3R 23945000 23945031 8 105 3.0 2.5 2.8 2.1 136 chr3R 23944895 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945031 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-374 1738 chr3R 24021607 24021660 chr3R 24021717 24021767 7 109 1.0 1.5 1.2 3.2 160 chr3R 24021607 intron KrT95D - chr3R 24021687 intron KrT95D - chr3R 24021767 intron KrT95D - chr3R_7_24020001 chr3R_24020001 RAL-374 1739 chr3R 24080590 24080641 chr3R 24080709 24080757 10 119 4.5 0.5 2.5 2.9 167 chr3R 24080590 intron 4EHP - chr3R 24080674 intron 4EHP - chr3R 24080757 intron 4EHP - chr3R_10_24080001 chr3R_24080001 RAL-374 1740 chr3R 24082074 24082092 chr3R 24082181 24082200 5 108 5.5 1.5 3.5 1.1 126 chr3R 24082074 intron 4EHP - chr3R 24082137 intron 4EHP - chr3R 24082200 intron 4EHP - chr3R_5_24080001 chr3R_24080001 RAL-374 1741 chr3R 24100439 24100596 chr3R 24100552 24100840 11 161 0.0 0.0 0.0 11.0 401 chr3R 24100439 intron 4EHP - chr3R 24100640 intron 4EHP - chr3R 24100840 intron 4EHP - chr3R_11_24100001 chr3R_24100001 RAL-374 1742 chr3R 24207216 24207241 chr3R 24212312 24212337 flea 6 5094 2.0 6.5 4.2 1.2 5121 chr3R 24207216 intron twin - chr3R 24209776 intron twin - chr3R 24212337 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-374 1743 chr3R 24431601 24431622 chr3R 24431700 24431719 9 99 5.0 0.0 2.5 2.6 118 chr3R 24431601 intron nAChRalpha1 - chr3R 24431660 intron nAChRalpha1 - chr3R 24431719 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-374 1744 chr3R 24433469 24433490 chr3R 24433568 24433589 7 99 2.5 6.5 4.5 1.3 120 chr3R 24433469 intron nAChRalpha1 - chr3R 24433529 intron nAChRalpha1 - chr3R 24433589 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-374 1745 chr3R 24466458 24466478 chr3R 24466541 24466576 7 95 4.0 2.0 3.0 1.8 118 chr3R 24466458 intergenic not near genes chr3R 24466517 intergenic not near genes chr3R 24466576 intergenic not near genes chr3R_7_24465001 chr3R_24465001 RAL-374 1746 chr3R 24493259 24493304 chr3R 24493508 24493552 BS 5 249 4.0 2.5 3.2 1.2 293 chr3R 24493259 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493552 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-374 1747 chr3R 24624357 24624393 chr3R 24624466 24624502 9 108 4.5 2.5 3.5 2.0 145 chr3R 24624357 intron Syx18 - chr3R 24624430 intron Syx18 - chr3R 24624502 exon Syx18 - chr3R_9_24620001 chr3R_24620001 RAL-374 1748 chr3R 24670160 24670195 chr3R 24670264 24670299 5 104 1.0 5.0 3.0 1.2 139 chr3R 24670160 intron slo + chr3R 24670230 intron slo + chr3R 24670299 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-374 1749 chr3R 24685382 24685420 chr3R 24685690 24685730 11 306 2.5 4.0 3.2 2.6 348 chr3R 24685382 intron slo + chr3R 24685556 intron slo + chr3R 24685730 intron slo + chr3R_11_24685001 chr3R_24685001 RAL-374 1750 chr3R 24730078 24730106 chr3R 24732469 24732477 Doc 7 2391 4.0 0.0 2.0 2.3 2399 chr3R 24730078 intron tok + chr3R 24731278 intron tok + chr3R 24732477 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-374 1751 chr3R 24842094 24842129 chr3R 24842196 24842235 9 105 2.5 2.0 2.2 2.8 141 chr3R 24842094 5` UTR Esp + chr3R 24842164 5` UTR Esp + chr3R 24842235 5` UTR Esp + chr3R_9_24840001 chr3R_24840001 RAL-374 1752 chr3R 24912465 24912500 chr3R 24912567 24912602 4 102 3.5 0.5 2.0 1.3 137 chr3R 24912465 intergenic not near genes chr3R 24912534 intergenic CR44267 + chr3R 24912602 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-374 1753 chr3R 24927112 24927154 chr3R 24931921 24931965 Doc 9 4808 2.0 1.0 1.5 3.6 4853 chr3R 24927112 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931965 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-374 1754 chr3R 24972454 24972495 chr3R 24972544 24972553 6 89 3.0 2.5 2.8 1.6 99 chr3R 24972454 intergenic not near genes chr3R 24972504 intergenic not near genes chr3R 24972553 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-374 1755 chr3R 24974899 24974933 chr3R 24974995 24975031 9 97 1.0 6.0 3.5 2.0 132 chr3R 24974899 intergenic not near genes chr3R 24974965 intergenic not near genes chr3R 24975031 intergenic not near genes chr3R_9_24970001 chr3R_24970001 RAL-374 1756 chr3R 25004880 25004918 chr3R 25004983 25005020 12 100 6.0 0.5 3.2 2.9 140 chr3R 25004880 intron tnc + chr3R 25004950 intron tnc + chr3R 25005020 intron tnc + chr3R_12_25000001 chr3R_25000001 RAL-374 1757 chr3R 25088758 25088810 chr3R 25088863 25088915 11 99 2.5 3.0 2.8 2.9 157 chr3R 25088758 intergenic not near genes chr3R 25088836 intergenic not near genes chr3R 25088915 intergenic not near genes chr3R_11_25085001 chr3R_25085001 RAL-374 1758 chr3R 25209577 25209629 chr3R 25209678 25209730 17 99 0.0 2.0 1.0 8.5 153 chr3R 25209577 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209730 intron CG13654 + chr3R_17_25205001 chr3R_25205001 RAL-374 1759 chr3R 25235812 25235844 chr3R 25235912 25235944 4 100 1.5 2.0 1.8 1.4 132 chr3R 25235812 intergenic CG10420 - chr3R 25235878 intergenic CG10420 - chr3R 25235944 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-374 1760 chr3R 25362190 25362205 chr3R 25362406 25362421 6 215 2.5 1.5 2.0 2.0 231 chr3R 25362190 intron Fur1 - chr3R 25362306 intron Fur1 - chr3R 25362421 intron Fur1 - chr3R_6_25360001 chr3R_25360001 RAL-374 1761 chr3R 25362207 25362228 chr3R 25362401 25362444 7 212 1.0 1.5 1.2 3.2 237 chr3R 25362207 intron Fur1 - chr3R 25362326 intron Fur1 - chr3R 25362444 intron Fur1 - chr3R_7_25360001 chr3R_25360001 RAL-374 1762 chr3R 25377072 25377122 chr3R 25377358 25377408 15 286 2.0 2.0 2.0 5.0 336 chr3R 25377072 intron Fur1 - chr3R 25377240 intron Fur1 - chr3R 25377408 intron Fur1 - chr3R_15_25375001 chr3R_25375001 RAL-374 1763 chr3R 25411769 25411791 chr3R 25411885 25411914 4 118 0.5 1.5 1.0 2.0 145 chr3R 25411769 intron Fur1 - chr3R 25411842 intron Fur1 - chr3R 25411914 intron Fur1 - chr3R_4_25410001 chr3R_25410001 RAL-374 1764 chr3R 25422046 25422070 chr3R 25422147 25422171 5 101 6.5 0.0 3.2 1.2 125 chr3R 25422046 intron Fur1 - chr3R 25422108 intron Fur1 - chr3R 25422171 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-374 1765 chr3R 25436469 25436514 chr3R 25436583 25436594 15 102 1.5 4.0 2.8 3.9 125 chr3R 25436469 intron Fur1 - chr3R 25436532 intron Fur1 - chr3R 25436594 intron Fur1 - chr3R_15_25435001 chr3R_25435001 RAL-374 1766 chr3R 25526245 25526265 chr3R 25526334 25526362 6 95 3.0 2.5 2.8 1.6 117 chr3R 25526245 intron msi + chr3R 25526304 intron msi + chr3R 25526362 intron msi + chr3R_6_25525001 chr3R_25525001 RAL-374 1767 chr3R 25642574 25642612 chr3R 25642684 25642692 11 107 3.0 3.5 3.2 2.6 118 chr3R 25642574 intron jigr1 + chr3R 25642633 intron jigr1 + chr3R 25642692 intron jigr1 + chr3R_11_25640001 chr3R_25640001 RAL-374 1768 chr3R 25652306 25652344 chr3R 25652396 25652440 8 96 1.0 2.5 1.8 2.9 134 chr3R 25652306 intergenic not near genes chr3R 25652373 intergenic not near genes chr3R 25652440 intergenic not near genes chr3R_8_25650001 chr3R_25650001 RAL-374 1769 chr3R 25669046 25669092 chr3R 25669160 25669206 7 110 2.0 1.0 1.5 2.8 160 chr3R 25669046 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669206 exon Lgr3 + chr3R_7_25665001 chr3R_25665001 RAL-374 1770 chr3R 25689116 25689163 chr3R 25689235 25689247 9 120 4.5 1.5 3.0 2.2 131 chr3R 25689116 intergenic not near genes chr3R 25689182 intergenic not near genes chr3R 25689247 intergenic not near genes chr3R_9_25685001 chr3R_25685001 RAL-374 1771 chr3R 13353187 13353191 chr3R 25706701 25706704 4 12353514 11.0 10.0 10.5 0.3 12353517 chr3R 13353187 intergenic mthl12 + chr3R 19529946 intron Dys + chr3R 25706704 intron LpR2 - chr3R_4_19525001 chr3R_19525001 RAL-374 1772 chr3R 25716358 25716407 chr3R 25716456 25716505 10 98 3.0 3.5 3.2 2.4 147 chr3R 25716358 intron LpR2 - chr3R 25716432 intron LpR2 - chr3R 25716505 intron LpR2 - chr3R_10_25715001 chr3R_25715001 RAL-374 1773 chr3R 25725812 25725857 chr3R 25734992 25735037 roo 6 9180 1.0 2.5 1.8 2.1 9225 chr3R 25725812 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735037 intron LpR2 - chr3R_6_25730001 chr3R_25730001 RAL-374 1774 chr3R 25765856 25765904 chr3R 25765955 25766003 13 97 6.5 4.5 5.5 2.0 147 chr3R 25765856 intergenic not near genes chr3R 25765930 intergenic not near genes chr3R 25766003 intergenic not near genes chr3R_13_25765001 chr3R_25765001 RAL-374 1775 chr3R 25801250 25801292 chr3R 25802254 25802296 8 1000 0.5 2.0 1.2 3.6 1046 chr3R 25801250 intergenic not near genes chr3R 25801773 intergenic not near genes chr3R 25802296 intergenic not near genes chr3R_8_25800001 chr3R_25800001 RAL-374 1776 chr3R 25819246 25819283 chr3R 25829171 25829208 10 9925 19.0 17.5 18.2 0.5 9962 chr3R 25819246 intergenic not near genes chr3R 25824227 3` UTR CR44949 - chr3R 25829208 intergenic Mst57Dc - chr3R_10_25820001 chr3R_25820001 RAL-374 1777 chr3R 25832682 25832724 chr3R 25841878 25841918 roo 12 9197 3.5 1.5 2.5 3.4 9236 chr3R 25832682 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841918 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-374 1778 chr3R 25843619 25843668 chr3R 25843769 25843818 6 150 1.5 3.0 2.2 1.9 199 chr3R 25843619 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843818 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-374 1779 chr3R 25997234 25997266 chr3R 25997341 25997373 8 106 2.0 2.5 2.2 2.5 139 chr3R 25997234 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997304 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997373 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_8_25995001 chr3R_25995001 RAL-374 1780 chr3R 26015694 26015733 chr3R 26015800 26015840 11 105 4.5 3.5 4.0 2.2 146 chr3R 26015694 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015767 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015840 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R_11_26015001 chr3R_26015001 RAL-374 1781 chr3R 26093840 26093859 chr3R 26093938 26093957 6 98 3.5 5.5 4.5 1.1 117 chr3R 26093840 intron dys - chr3R 26093898 intron dys - chr3R 26093957 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-374 1782 chr3R 26104067 26104100 chr3R 26105126 26105163 5 1060 16.5 21.0 18.8 0.3 1096 chr3R 26104067 intergenic not near genes chr3R 26104615 intergenic not near genes chr3R 26105163 intergenic not near genes chr3R_5_26100001 chr3R_26100001 RAL-374 1783 chr3R 26121958 26121981 chr3R 26122074 26122098 6 117 0.0 2.0 1.0 3.0 140 chr3R 26121958 intron CG31324 + chr3R 26122028 intron CG31324 + chr3R 26122098 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-374 1784 chr3R 26122441 26122474 chr3R 26122537 26122569 5 96 4.0 4.5 4.2 1.0 128 chr3R 26122441 intron CG31324 + chr3R 26122505 intron CG31324 + chr3R 26122569 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-374 1785 chr3R 26126254 26126288 chr3R 26126378 26126413 9 125 1.0 2.0 1.5 3.6 159 chr3R 26126254 intron CG31324 + chr3R 26126334 intron CG31324 + chr3R 26126413 intron CG31324 + chr3R_9_26125001 chr3R_26125001 RAL-374 1786 chr3R 26166154 26166205 chr3R 26166260 26166308 8 100 3.0 1.5 2.2 2.5 154 chr3R 26166154 intergenic not near genes chr3R 26166231 intergenic not near genes chr3R 26166308 intergenic not near genes chr3R_8_26165001 chr3R_26165001 RAL-374 1787 chr3R 26265793 26265839 chr3R 26265901 26265943 9 107 2.5 3.0 2.8 2.4 150 chr3R 26265793 intron CG6154 + chr3R 26265868 intron CG6154 + chr3R 26265943 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-374 1788 chr3R 26292102 26292135 chr3R 26292202 26292234 7 99 2.5 4.5 3.5 1.6 132 chr3R 26292102 intergenic not near genes chr3R 26292168 intergenic not near genes chr3R 26292234 intergenic not near genes chr3R_7_26290001 chr3R_26290001 RAL-374 1789 chr3R 26314630 26314675 chr3R 26314795 26314840 12 165 1.0 3.5 2.2 3.8 210 chr3R 26314630 intergenic not near genes chr3R 26314735 intergenic not near genes chr3R 26314840 intergenic not near genes chr3R_12_26310001 chr3R_26310001 RAL-374 1790 chr3R 26320334 26320367 chr3R 26320541 26320572 8 204 5.5 3.0 4.2 1.5 238 chr3R 26320334 intron CG33970 + chr3R 26320453 intron CG33970 + chr3R 26320572 intron CG33970 + chr3R_8_26320001 chr3R_26320001 RAL-374 1791 chr3R 26325664 26325705 chr3R 26325772 26325775 9 98 8.0 4.5 6.2 1.2 111 chr3R 26325664 intron CG33970 + chr3R 26325720 intron CG33970 + chr3R 26325775 intron CG33970 + chr3R_9_26325001 chr3R_26325001 RAL-374 1792 chr3R 26338333 26338352 chr3R 26338431 26338460 5 106 1.0 4.0 2.5 1.4 127 chr3R 26338333 intron CG33970 + chr3R 26338396 intron CG33970 + chr3R 26338460 intron CG33970 + chr3R_5_26335001 chr3R_26335001 RAL-374 1793 chr3R 26376315 26376343 chr3R 26385495 26385523 roo 4 9176 5.5 0.0 2.8 1.1 9208 chr3R 26376315 intergenic not near genes chr3R 26380919 intergenic not near genes chr3R 26385523 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-374 1794 chr3R 26405899 26405939 chr3R 26405995 26406035 6 95 1.5 3.0 2.2 1.9 136 chr3R 26405899 intergenic not near genes chr3R 26405967 intergenic not near genes chr3R 26406035 intergenic not near genes chr3R_6_26405001 chr3R_26405001 RAL-374 1795 chr3R 26425856 26425907 chr3R 26425958 26425982 4 88 1.5 1.5 1.5 1.6 126 chr3R 26425856 intron CR31084 + chr3R 26425919 intron CR31084 + chr3R 26425982 intron CR31084 + chr3R_4_26425001 chr3R_26425001 RAL-374 1796 chr3R 26450515 26450543 chr3R 26450619 26450657 8 116 1.0 1.0 1.0 4.0 142 chr3R 26450515 exon Hex-t1 + chr3R 26450586 intergenic Hex-t1 +,Hex-t2 + chr3R 26450657 intergenic Hex-t2 +,Hex-t1 + chr3R_8_26450001 chr3R_26450001 RAL-374 1797 chr3R 26465949 26465964 chr3R 26466184 26466212 5 243 4.5 1.5 3.0 1.2 263 chr3R 26465949 intron CG5455 + chr3R 26466080 intron CG5455 + chr3R 26466212 intron CG5455 + chr3R_5_26465001 chr3R_26465001 RAL-374 1798 chr3R 26510501 26510535 chr3R 26519576 26519610 roo 5 9075 1.5 3.0 2.2 1.6 9109 chr3R 26510501 intron plum - chr3R 26515056 intron plum - chr3R 26519610 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-374 1799 chr3R 26553197 26553234 chr3R 26553720 26553754 15 522 3.5 2.5 3.0 3.8 557 chr3R 26553197 intron scrib + chr3R 26553476 intron scrib + chr3R 26553754 intron scrib + chr3R_15_26550001 chr3R_26550001 RAL-374 1800 chr3R 26558332 26558361 chr3R 26565648 26565693 Stalker4 6 7326 2.5 2.5 2.5 1.7 7361 chr3R 26558332 intron scrib + chr3R 26562012 intron scrib + chr3R 26565693 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-374 1801 chr3R 26607727 26607763 chr3R 26607823 26607859 9 94 2.5 5.0 3.8 1.9 132 chr3R 26607727 5` UTR CR44951 + chr3R 26607793 5` UTR CR44951 + chr3R 26607859 5` UTR CR44951 + chr3R_9_26605001 chr3R_26605001 RAL-374 1802 chr3R 26641634 26641655 chr3R 26641740 26641761 5 106 4.0 4.5 4.2 1.0 127 chr3R 26641634 intergenic not near genes chr3R 26641698 intergenic not near genes chr3R 26641761 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-374 1803 chr3R 26642729 26642762 chr3R 26643143 26643176 jockey 8 412 4.5 4.5 4.5 1.5 447 chr3R 26642729 intergenic not near genes chr3R 26642952 intergenic not near genes chr3R 26643176 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-374 1804 chr3R 26660637 26660675 chr3R 26660734 26660772 5 98 2.0 0.0 1.0 2.5 135 chr3R 26660637 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660772 intron beat-VII - chr3R_5_26660001 chr3R_26660001 RAL-374 1805 chr3R 26695544 26695593 chr3R 26695672 26695685 8 117 1.0 2.5 1.8 2.9 141 chr3R 26695544 intergenic not near genes chr3R 26695614 intergenic not near genes chr3R 26695685 intergenic not near genes chr3R_8_26695001 chr3R_26695001 RAL-374 1806 chr3R 26770241 26770271 chr3R 26770317 26770367 11 95 2.5 2.5 2.5 3.1 126 chr3R 26770241 intergenic CR45563 + chr3R 26770304 intergenic CR45563 + chr3R 26770367 intergenic not near genes chr3R_11_26770001 chr3R_26770001 RAL-374 1807 chr3R 26810548 26810586 chr3R 26811053 26811091 roo 7 505 3.5 2.5 3.0 1.8 543 chr3R 26810548 intron Tl + chr3R 26810820 intron Tl + chr3R 26811091 intron Tl + chr3R_7_26810001 chr3R_26810001 RAL-374 1808 chr3R 26854764 26854807 chr3R 26855283 26855316 8 517 4.0 1.5 2.8 2.1 552 chr3R 26854764 intron Lerp - chr3R 26855040 intron Lerp - chr3R 26855316 intron Lerp - chr3R_8_26855001 chr3R_26855001 RAL-374 1809 chr3R 26857859 26857902 chr3R 26857967 26857991 6 105 3.0 3.5 3.2 1.4 132 chr3R 26857859 intron Lerp - chr3R 26857925 intron Lerp - chr3R 26857991 intron Lerp - chr3R_6_26855001 chr3R_26855001 RAL-374 1810 chr3R 26917281 26917321 chr3R 26917380 26917424 7 98 0.5 2.5 1.5 2.8 143 chr3R 26917281 intron sda + chr3R 26917352 intron sda + chr3R 26917424 intron sda + chr3R_7_26915001 chr3R_26915001 RAL-374 1811 chr3R 27007319 27007330 chr3R 27007425 27007436 5 106 6.0 0.0 3.0 1.2 117 chr3R 27007319 intron RYa-R + chr3R 27007378 intron RYa-R + chr3R 27007436 intron RYa-R + chr3R_5_27005001 chr3R_27005001 RAL-374 1812 chr3R 27007361 27007437 chr3R 27016543 27016592 roo 8 9158 0.0 5.0 2.5 2.3 9231 chr3R 27007361 intron RYa-R + chr3R 27011976 intron RYa-R + chr3R 27016592 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-374 1813 chr3R 27140499 27140537 chr3R 27148129 27148167 412 11 7628 6.5 6.0 6.2 1.5 7668 chr3R 27140499 intron CG6051 - chr3R 27144333 intron CG6051 - chr3R 27148167 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-374 1814 chr3R 27245576 27245605 chr3R 27245687 27245693 6 106 7.0 1.0 4.0 1.2 117 chr3R 27245576 intergenic CG18766 - chr3R 27245634 intergenic CG18766 - chr3R 27245693 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-374 1815 chr3R 27300853 27300870 chr3R 27300965 27300981 4 111 3.5 11.0 7.2 0.5 128 chr3R 27300853 intron CG3339 - chr3R 27300917 intron CG3339 - chr3R 27300981 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-374 1816 chr3R 27315975 27316010 chr3R 27316071 27316106 9 95 3.5 2.0 2.8 2.4 131 chr3R 27315975 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316106 exon CG3339 - chr3R_9_27315001 chr3R_27315001 RAL-374 1817 chr3R 27317084 27317097 chr3R 27317184 27317196 4 100 6.5 6.0 6.2 0.6 112 chr3R 27317084 intron CG3339 - chr3R 27317140 intron CG3339 - chr3R 27317196 intron CG3339 - chr3R_4_27315001 chr3R_27315001 RAL-374 1818 chr3R 27329461 27329500 chr3R 27329558 27329594 8 96 2.0 1.0 1.5 3.2 133 chr3R 27329461 intergenic CG3330 - chr3R 27329528 intergenic CG3330 - chr3R 27329594 intergenic CG3330 - chr3R_8_27325001 chr3R_27325001 RAL-374 1819 chr3R 27342781 27342821 chr3R 27351381 27351421 Tirant 8 8600 1.5 2.5 2.0 2.7 8640 chr3R 27342781 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351421 intron CG42534 + chr3R_8_27345001 chr3R_27345001 RAL-374 1820 chr3R 27393655 27393707 chr3R 27393956 27394009 7 301 3.0 1.0 2.0 2.3 354 chr3R 27393655 intron side - chr3R 27393832 intron side - chr3R 27394009 intron side - chr3R_7_27390001 chr3R_27390001 RAL-374 1821 chr3R 27457846 27457889 chr3R 27457958 27457990 5 110 2.5 0.0 1.2 2.3 144 chr3R 27457846 intergenic not near genes chr3R 27457918 intergenic not near genes chr3R 27457990 intergenic not near genes chr3R_5_27455001 chr3R_27455001 RAL-374 1822 chr3R 27492357 27492383 chr3R 27492464 27492490 7 106 4.5 2.0 3.2 1.7 133 chr3R 27492357 intergenic not near genes chr3R 27492424 intergenic not near genes chr3R 27492490 intergenic not near genes chr3R_7_27490001 chr3R_27490001 RAL-374 1823 chr3R 27496591 27496603 chr3R 27496716 27496727 4 125 5.0 7.0 6.0 0.6 136 chr3R 27496591 intergenic not near genes chr3R 27496659 intergenic not near genes chr3R 27496727 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-374 1824 chr3R 27595031 27595086 chr3R 27595134 27595188 7 103 2.5 3.0 2.8 1.8 157 chr3R 27595031 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595188 intron CG5639 - chr3R_7_27595001 chr3R_27595001 RAL-374 1825 chr3R 27622217 27622257 chr3R 27622332 27622372 6 108 1.0 1.5 1.2 2.7 155 chr3R 27622217 intron Tusp + chr3R 27622294 intron Tusp + chr3R 27622372 intron Tusp + chr3R_6_27620001 chr3R_27620001 RAL-374 1826 chr3R 27627078 27627107 chr3R 27627197 27627228 8 120 3.0 2.0 2.5 2.3 150 chr3R 27627078 intron Tusp + chr3R 27627153 intron Tusp + chr3R 27627228 intron Tusp + chr3R_8_27625001 chr3R_27625001 RAL-374 1827 chr3R 27649192 27649222 chr3R 27649292 27649323 5 100 3.0 6.5 4.8 0.9 131 chr3R 27649192 intron tau - chr3R 27649258 intron tau - chr3R 27649323 intron tau - chr3R_5_27645001 chr3R_27645001 RAL-374 1828 chr3R 27706756 27706807 chr3R 27706853 27706904 12 94 2.0 2.0 2.0 4.0 148 chr3R 27706756 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706904 intergenic CG12428 -,CG12877 + chr3R_12_27705001 chr3R_27705001 RAL-374 1829 chr3R 27799920 27799962 chr3R 27800022 27800062 10 101 3.0 3.5 3.2 2.4 142 chr3R 27799920 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800062 intron CG34353 - chr3R_10_27795001 chr3R_27795001 RAL-374 1830 chr3R 27856747 27856786 chr3R 27858250 27858288 hopper2 7 1502 7.0 4.0 5.5 1.1 1541 chr3R 27856747 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858288 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-374 1831 chr3R 27862939 27862978 chr3R 27868263 27868284 Transpac 10 5322 1.5 2.0 1.8 3.6 5345 chr3R 27862939 intron CG34353 - chr3R 27865612 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_10_27865001 chr3R_27865001 RAL-374 1832 chr3R 27875687 27875729 chr3R 27882756 27882804 297 9 7074 1.5 4.5 3.0 2.2 7117 chr3R 27875687 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882804 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-374 1833 chr3R 27900318 27900366 chr3R 27900420 27900468 7 102 1.0 2.0 1.5 2.8 150 chr3R 27900318 intron CG34353 - chr3R 27900393 intron CG34353 - chr3R 27900468 intron CG34353 - chr3R_7_27900001 chr3R_27900001 RAL-374 1834 chr3R 28005752 28005786 chr3R 28005848 28005887 5 98 1.5 1.0 1.2 2.3 135 chr3R 28005752 intergenic not near genes chr3R 28005820 intergenic not near genes chr3R 28005887 intergenic not near genes chr3R_5_28005001 chr3R_28005001 RAL-374 1835 chr3R 28068492 28068527 chr3R 28073952 28073986 I-element 11 5460 0.0 2.5 1.2 5.0 5494 chr3R 28068492 intron CG34362 + chr3R 28071239 intron CG34362 + chr3R 28073986 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-374 1836 chr3R 28102569 28102603 chr3R 28102812 28102848 9 254 1.0 2.0 1.5 3.6 279 chr3R 28102569 intergenic not near genes chr3R 28102708 intergenic not near genes chr3R 28102848 intergenic not near genes chr3R_9_28100001 chr3R_28100001 RAL-374 1837 chr3R 28118551 28118842 chr3R 28118703 28118943 10 140 6.0 1.0 3.5 2.2 392 chr3R 28118551 intergenic not near genes chr3R 28118747 intergenic not near genes chr3R 28118943 intergenic not near genes chr3R_10_28115001 chr3R_28115001 RAL-374 1838 chr3R 28169833 28169873 chr3R 28170036 28170039 5 192 1.0 4.0 2.5 1.4 206 chr3R 28169833 intron CG34354 + chr3R 28169936 intron CG34354 + chr3R 28170039 intron CG34354 + chr3R_5_28165001 chr3R_28165001 RAL-374 1839 chr3R 28173659 28173701 chr3R 28181109 28181150 mdg1 5 7448 1.0 1.5 1.2 2.3 7491 chr3R 28173659 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181150 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-374 1840 chr3R 28223885 28223939 chr3R 28224361 28224415 4 476 1.5 3.0 2.2 1.2 530 chr3R 28223885 intron CG34354 + chr3R 28224150 intron CG34354 + chr3R 28224415 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-374 1841 chr3R 28253324 28253369 chr3R 28255854 28255899 jockey 9 2530 0.5 3.0 1.8 3.2 2575 chr3R 28253324 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255899 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-374 1842 chr3R 28276657 28276697 chr3R 28276761 28276765 10 100 1.5 2.0 1.8 3.6 108 chr3R 28276657 intergenic not near genes chr3R 28276711 intergenic not near genes chr3R 28276765 intergenic not near genes chr3R_10_28275001 chr3R_28275001 RAL-374 1843 chr3R 28282975 28283017 chr3R 28283624 28283666 16 649 1.0 3.5 2.2 5.0 691 chr3R 28282975 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283666 intergenic CG34437 +,CG34436 + chr3R_16_28280001 chr3R_28280001 RAL-374 1844 chr3R 28302088 28302123 chr3R 28302547 28302582 jockey 9 457 6.5 4.5 5.5 1.4 494 chr3R 28302088 intergenic not near genes chr3R 28302335 intergenic not near genes chr3R 28302582 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-374 1845 chr3R 28331500 28331529 chr3R 28331599 28331628 4 99 1.0 1.5 1.2 1.8 128 chr3R 28331500 intron larp - chr3R 28331564 intron larp - chr3R 28331628 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-374 1846 chr3R 28382154 28382162 chr3R 28382234 28382265 5 98 5.0 3.5 4.2 1.0 111 chr3R 28382154 intergenic not near genes chr3R 28382210 intergenic not near genes chr3R 28382265 intergenic not near genes chr3R_5_28380001 chr3R_28380001 RAL-374 1847 chr3R 28425167 28425218 chr3R 28425265 28425294 5 93 1.0 1.5 1.2 2.3 127 chr3R 28425167 intron beat-VI + chr3R 28425230 intron beat-VI + chr3R 28425294 intron beat-VI + chr3R_5_28425001 chr3R_28425001 RAL-374 1848 chr3R 28792853 28792898 chr3R 28797968 28798010 jockey 7 5113 1.0 1.5 1.2 3.2 5157 chr3R 28792853 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28798010 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-374 1849 chr3R 28827679 28827708 chr3R 28827843 28827883 8 173 1.0 2.0 1.5 3.2 204 chr3R 28827679 intron WASp - chr3R 28827781 intron WASp - chr3R 28827883 intron WASp - chr3R_8_28825001 chr3R_28825001 RAL-374 1850 chr3R 21907534 21907536 chr3R 28831801 28831802 24 6924266 15.5 6.5 11.0 2.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_24_25365001 chr3R_25365001 RAL-374 1851 chr3R 28845962 28846013 chr3R 28846070 28846098 7 97 1.0 0.0 0.5 4.7 136 chr3R 28845962 5` UTR spg + chr3R 28846030 intron spg + chr3R 28846098 intron spg + chr3R_7_28845001 chr3R_28845001 RAL-374 1852 chr3R 28960508 28960541 chr3R 28960596 28960646 7 102 1.0 2.5 1.8 2.5 138 chr3R 28960508 intron CG14521 - chr3R 28960577 intron CG14521 - chr3R 28960646 intron CG14521 - chr3R_7_28960001 chr3R_28960001 RAL-374 1853 chr3R 28971148 28971173 chr3R 28971249 28971274 5 101 3.0 0.5 1.8 1.8 126 chr3R 28971148 5` UTR CR45669 + chr3R 28971211 5` UTR CR45669 + chr3R 28971274 5` UTR CR45669 + chr3R_5_28970001 chr3R_28970001 RAL-374 1854 chr3R 29009935 29009980 chr3R 29010061 29010106 10 125 2.0 4.5 3.2 2.4 171 chr3R 29009935 intron wat - chr3R 29010020 intron wat - chr3R 29010106 intron wat - chr3R_10_29010001 chr3R_29010001 RAL-374 1855 chr3R 29017112 29017150 chr3R 29017225 29017264 7 112 2.0 2.5 2.2 2.2 152 chr3R 29017112 intron wat - chr3R 29017188 intron wat - chr3R 29017264 intron wat - chr3R_7_29015001 chr3R_29015001 RAL-374 1856 chr3R 29070041 29070078 chr3R 29070141 29070179 5 101 1.0 4.5 2.8 1.3 138 chr3R 29070041 intron CG11873 + chr3R 29070110 intron CG11873 + chr3R 29070179 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-374 1857 chr3R 29079368 29079401 chr3R 29080753 29080793 NOF 5 1390 4.0 1.5 2.8 1.3 1425 chr3R 29079368 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080793 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-374 1858 chr3R 29203834 29203849 chr3R 29203933 29203949 4 100 7.0 0.0 3.5 0.9 115 chr3R 29203834 5` UTR CG14508 - chr3R 29203892 intron CG14508 - chr3R 29203949 intron CG14508 - chr3R_4_29200001 chr3R_29200001 RAL-374 1859 chr3R 29213040 29213089 chr3R 29213142 29213192 20 102 5.0 2.0 3.5 4.4 152 chr3R 29213040 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213192 intergenic not near genes chr3R_20_29210001 chr3R_29210001 RAL-374 1860 chr3R 29237236 29237244 chr3R 29239276 29239285 4 2038 13.0 6.0 9.5 0.4 2049 chr3R 29237236 exon CG11951 - chr3R 29238260 intron CG11951 - chr3R 29239285 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-374 1861 chr3R 29237255 29237279 chr3R 29239273 29239316 9 2025 7.0 5.0 6.0 1.3 2061 chr3R 29237255 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239316 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-374 1862 chr3R 29264194 29264213 chr3R 29264316 29264335 4 122 0.0 1.5 0.8 2.2 141 chr3R 29264194 intergenic not near genes chr3R 29264264 intergenic not near genes chr3R 29264335 intergenic not near genes chr3R_4_29260001 chr3R_29260001 RAL-374 1863 chr3R 29319817 29319851 chr3R 29320156 29320188 jockey 10 338 1.0 4.5 2.8 2.6 371 chr3R 29319817 intergenic Cnx99A - chr3R 29320002 intergenic Cnx99A - chr3R 29320188 intergenic not near genes chr3R_10_29320001 chr3R_29320001 RAL-374 1864 chr3R 29329156 29329196 chr3R 29329519 29329559 7 363 0.5 2.5 1.5 2.8 403 chr3R 29329156 intergenic not near genes chr3R 29329358 intergenic not near genes chr3R 29329559 intergenic not near genes chr3R_7_29325001 chr3R_29325001 RAL-374 1865 chr3R 29340568 29340588 chr3R 29340665 29340685 4 97 7.5 1.0 4.2 0.8 117 chr3R 29340568 intergenic not near genes chr3R 29340626 intergenic not near genes chr3R 29340685 intergenic not near genes chr3R_4_29340001 chr3R_29340001 RAL-374 1866 chr3R 29356024 29356071 chr3R 29356124 29356172 4 101 0.0 2.5 1.2 1.8 148 chr3R 29356024 intergenic CR45547 - chr3R 29356098 intergenic CR45547 - chr3R 29356172 3` UTR CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-374 1867 chr3R 29384844 29384859 chr3R 29384980 29384999 7 139 5.0 1.0 3.0 1.8 155 chr3R 29384844 intron Ptp99A + chr3R 29384922 intron Ptp99A + chr3R 29384999 intron Ptp99A + chr3R_7_29380001 chr3R_29380001 RAL-374 1868 chr3R 29406600 29406644 chr3R 29407906 29407929 jockey 14 1300 0.0 6.5 3.2 3.3 1329 chr3R 29406600 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_14_29405001 chr3R_29405001 RAL-374 1869 chr3R 29471989 29472035 chr3R 29472102 29472126 8 105 2.5 3.0 2.8 2.1 137 chr3R 29471989 intron Ptp99A + chr3R 29472058 intron Ptp99A + chr3R 29472126 intron Ptp99A + chr3R_8_29470001 chr3R_29470001 RAL-374 1870 chr3R 29505872 29505922 chr3R 29505969 29506004 5 94 1.0 5.0 3.0 1.2 132 chr3R 29505872 intergenic not near genes chr3R 29505938 intergenic not near genes chr3R 29506004 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-374 1871 chr3R 29539426 29539443 chr3R 29539522 29539539 5 96 0.0 0.0 0.0 5.0 113 chr3R 29539426 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539539 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-374 1872 chr3R 29590372 29590398 chr3R 29590485 29590510 16 113 2.0 2.5 2.2 5.0 138 chr3R 29590372 intron CG31041 - chr3R 29590441 intron CG31041 - chr3R 29590510 exon CG31041 - chr3R_16_29590001 chr3R_29590001 RAL-374 1873 chr3R 29592721 29592764 chr3R 29592816 29592862 6 96 2.5 1.5 2.0 2.0 141 chr3R 29592721 intron alph + chr3R 29592792 intron alph + chr3R 29592862 intron alph + chr3R_6_29590001 chr3R_29590001 RAL-374 1874 chr3R 29615091 29615111 chr3R 29615167 29615193 4 81 1.5 2.0 1.8 1.4 102 chr3R 29615091 intron alph + chr3R 29615142 intron alph + chr3R 29615193 intron alph + chr3R_4_29615001 chr3R_29615001 RAL-374 1875 chr3R 29627540 29627586 chr3R 29627651 29627696 5 105 1.5 1.0 1.2 2.3 156 chr3R 29627540 intergenic not near genes chr3R 29627618 intergenic not near genes chr3R 29627696 intergenic not near genes chr3R_5_29625001 chr3R_29625001 RAL-374 1876 chr3R 29648992 29649008 chr3R 29649100 29649117 4 109 1.0 2.0 1.5 1.6 125 chr3R 29648992 intron Dop1R2 - chr3R 29649054 intron Dop1R2 - chr3R 29649117 intron Dop1R2 - chr3R_4_29645001 chr3R_29645001 RAL-374 1877 chr3R 29719382 29719424 chr3R 29719488 29719530 8 104 2.0 1.0 1.5 3.2 148 chr3R 29719382 intron CG15506 + chr3R 29719456 intron CG15506 + chr3R 29719530 intron CG15506 + chr3R_8_29715001 chr3R_29715001 RAL-374 1878 chr3R 29738253 29738295 chr3R 29739740 29739782 hobo 15 1484 2.5 4.0 3.2 3.6 1529 chr3R 29738253 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739782 5` UTR CG1969 + chr3R_15_29735001 chr3R_29735001 RAL-374 1879 chr3R 29760347 29760383 chr3R 29761568 29761604 pogo 8 1220 3.0 0.5 1.8 2.9 1257 chr3R 29760347 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761604 intergenic not near genes chr3R_8_29760001 chr3R_29760001 RAL-374 1880 chr3R 29769666 29769674 chr3R 29769766 29769776 4 102 6.0 2.5 4.2 0.8 110 chr3R 29769666 intron kay + chr3R 29769721 intron kay + chr3R 29769776 intron kay + chr3R_4_29765001 chr3R_29765001 RAL-374 1881 chr3R 29769676 29769708 chr3R 29769763 29769810 8 96 2.5 2.5 2.5 2.3 134 chr3R 29769676 intron kay + chr3R 29769743 intron kay + chr3R 29769810 intron kay + chr3R_8_29765001 chr3R_29765001 RAL-374 1882 chr3R 29880566 29880610 chr3R 29880670 29880700 8 95 1.0 2.5 1.8 2.9 134 chr3R 29880566 intron CG31038 + chr3R 29880633 intron CG31038 + chr3R 29880700 intron CG31038 + chr3R_8_29880001 chr3R_29880001 RAL-374 1883 chr3R 29882000 29882047 chr3R 29891177 29891224 roo 18 9176 1.5 3.0 2.2 5.6 9224 chr3R 29882000 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891224 intron CG31038 + chr3R_18_29885001 chr3R_29885001 RAL-374 1884 chr3R 29923616 29923648 chr3R 29925443 29925475 7 1833 4.5 13.0 8.8 0.7 1859 chr3R 29923616 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924546 exon Jon99Cii - chr3R 29925475 exon Jon99Ci - chr3R_7_29920001 chr3R_29920001 RAL-374 1885 chr3R 29950556 29950597 chr3R 29950653 29950692 6 95 2.0 1.5 1.8 2.1 136 chr3R 29950556 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950692 intergenic TkR99D - chr3R_6_29950001 chr3R_29950001 RAL-374 1886 chr3R 29963479 29963500 chr3R 29963598 29963622 6 121 1.0 3.0 2.0 2.0 143 chr3R 29963479 intron TkR99D - chr3R 29963550 intron TkR99D - chr3R 29963622 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-374 1887 chr3R 30032142 30032153 chr3R 30032241 30032252 5 98 3.5 2.0 2.8 1.3 110 chr3R 30032142 intron Axn + chr3R 30032197 intron Axn + chr3R 30032252 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-374 1888 chr3R 30136956 30136962 chr3R 30137029 30137061 5 94 2.0 1.0 1.5 2.0 105 chr3R 30136956 exon AdoR - chr3R 30137008 intron AdoR - chr3R 30137061 intron AdoR - chr3R_5_30135001 chr3R_30135001 RAL-374 1889 chr3R 30182735 30182776 chr3R 30182894 30182935 6 158 2.0 2.0 2.0 2.0 200 chr3R 30182735 intergenic not near genes chr3R 30182835 intergenic not near genes chr3R 30182935 intergenic not near genes chr3R_6_30180001 chr3R_30180001 RAL-374 1890 chr3R 30224631 30224672 chr3R 30224729 30224770 9 98 2.0 2.5 2.2 2.8 139 chr3R 30224631 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224770 intergenic not near genes chr3R_9_30220001 chr3R_30220001 RAL-374 1891 chr3R 30238751 30238797 chr3R 30239935 30239941 1360 9 1179 2.0 1.5 1.8 3.2 1190 chr3R 30238751 intergenic not near genes chr3R 30239346 intergenic not near genes chr3R 30239941 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-374 1892 chr3R 30246307 30246336 chr3R 30246406 30246435 7 98 0.0 1.5 0.8 3.9 128 chr3R 30246307 intron CG9733 - chr3R 30246371 intron CG9733 - chr3R 30246435 intron CG9733 - chr3R_7_30245001 chr3R_30245001 RAL-374 1893 chr3R 30317313 30317358 chr3R 30324924 30324970 roo 4 7612 1.0 5.0 3.0 1.0 7657 chr3R 30317313 intron hdc + chr3R 30321142 intron hdc + chr3R 30324970 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-374 1894 chr3R 30330497 30330520 chr3R 30330579 30330596 6 89 2.5 7.0 4.8 1.0 99 chr3R 30330497 intron hdc + chr3R 30330546 intron hdc + chr3R 30330596 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-374 1895 chr3R 30347010 30347035 chr3R 30347114 30347139 4 104 5.0 8.5 6.8 0.5 129 chr3R 30347010 intron hdc + chr3R 30347074 intron hdc + chr3R 30347139 intron hdc + chr3R_4_30345001 chr3R_30345001 RAL-374 1896 chr3R 30364845 30364858 chr3R 30365037 30365047 4 191 1.5 3.5 2.5 1.1 202 chr3R 30364845 3` UTR hdc + chr3R 30364946 3` UTR hdc + chr3R 30365047 3` UTR hdc + chr3R_4_30360001 chr3R_30360001 RAL-374 1897 chr3R 30364859 30364865 chr3R 30365027 30365058 4 184 1.5 3.5 2.5 1.1 199 chr3R 30364859 3` UTR hdc + chr3R 30364958 3` UTR hdc + chr3R 30365058 3` UTR hdc + chr3R_4_30360001 chr3R_30360001 RAL-374 1898 chr3R 30440670 30440710 chr3R 30440949 30440980 13 276 3.5 4.0 3.8 2.7 310 chr3R 30440670 intron CG15537 - chr3R 30440825 intron CG15537 - chr3R 30440980 intron CG15537 - chr3R_13_30440001 chr3R_30440001 RAL-374 1899 chr3R 30457995 30458046 chr3R 30458095 30458146 14 98 3.5 0.5 2.0 4.7 151 chr3R 30457995 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458146 intron CG2224 - chr3R_14_30455001 chr3R_30455001 RAL-374 1900 chr3R 30471896 30471936 chr3R 30471992 30472011 9 92 2.5 4.5 3.5 2.0 115 chr3R 30471896 intron PH4alphaEFB + chr3R 30471954 intron PH4alphaEFB + chr3R 30472011 intron PH4alphaEFB + chr3R_9_30470001 chr3R_30470001 RAL-374 1901 chr3R 30480472 30480493 chr3R 30482947 30482979 jockey 5 2483 4.0 5.5 4.8 0.9 2507 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-374 1902 chr3R 30480498 30480511 chr3R 30482940 30482982 jockey 6 2474 3.5 5.0 4.2 1.2 2484 chr3R 30480498 intron PH4alphaEFB + chr3R 30481740 intron PH4alphaEFB + chr3R 30482982 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-374 1903 chr3R 30488103 30488119 chr3R 30488202 30488218 5 99 3.0 0.0 1.5 2.0 115 chr3R 30488103 intergenic Jon99Fii - chr3R 30488160 intergenic Jon99Fii - chr3R 30488218 intergenic Jon99Fii - chr3R_5_30485001 chr3R_30485001 RAL-374 1904 chr3R 30498409 30498431 chr3R 30498629 30498643 12 219 0.0 3.0 1.5 4.8 234 chr3R 30498409 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498643 intron PH4alphaNE1 - chr3R_12_30495001 chr3R_30495001 RAL-374 1905 chr3R 30544645 30544688 chr3R 30544734 30544739 10 81 0.5 2.5 1.5 4.0 94 chr3R 30544645 intron tmod + chr3R 30544692 intron tmod + chr3R 30544739 intron tmod + chr3R_10_30540001 chr3R_30540001 RAL-374 1906 chr3R 30558129 30558154 chr3R 30558230 30558255 5 101 1.0 4.5 2.8 1.3 126 chr3R 30558129 intron,intron tmod +,CG34155 - chr3R 30558192 intron,intron tmod +,CG34155 - chr3R 30558255 intron,intron tmod +,CG34155 - chr3R_5_30555001 chr3R_30555001 RAL-374 1907 chr3R 30592496 30592529 chr3R 30592622 30592659 4 129 3.0 1.0 2.0 1.3 163 chr3R 30592496 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592659 intergenic CG2246 - chr3R_4_30590001 chr3R_30590001 RAL-374 1908 chr3R 30679501 30679550 chr3R 30686989 30687036 blood 9 7488 2.0 5.0 3.5 2.0 7535 chr3R 30679501 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687036 intergenic not near genes chr3R_9_30680001 chr3R_30680001 RAL-374 1909 chr3R 30690143 30690183 chr3R 30690247 30690283 6 100 5.0 2.5 3.8 1.2 140 chr3R 30690143 intergenic Spn100A + chr3R 30690213 intergenic Spn100A + chr3R 30690283 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-374 1910 chr3R 30859385 30859426 chr3R 30859483 30859524 5 98 2.0 2.0 2.0 1.7 139 chr3R 30859385 intergenic not near genes chr3R 30859454 intergenic not near genes chr3R 30859524 intergenic not near genes chr3R_5_30855001 chr3R_30855001 RAL-374 1911 chr3R 30900517 30900564 chr3R 30901671 30901719 5 1155 3.0 0.5 1.8 1.8 1202 chr3R 30900517 exon Cyp4c3 + chr3R 30901118 intron CG33483 - chr3R 30901719 intron CG33483 - chr3R_5_30900001 chr3R_30900001 RAL-374 1912 chr3R 30985669 30985695 chr3R 30985774 30985800 5 104 3.0 2.5 2.8 1.3 131 chr3R 30985669 intron 5-HT7 - chr3R 30985734 intron 5-HT7 - chr3R 30985800 intron 5-HT7 - chr3R_5_30985001 chr3R_30985001 RAL-374 1913 chr3R 30993645 30993653 chr3R 30993742 30993754 4 99 3.0 2.0 2.5 1.1 109 chr3R 30993645 intron 5-HT7 - chr3R 30993700 intron 5-HT7 - chr3R 30993754 intron 5-HT7 - chr3R_4_30990001 chr3R_30990001 RAL-374 1914 chr3R 31042089 31042131 chr3R 31042196 31042238 14 106 3.5 3.5 3.5 3.1 149 chr3R 31042089 intron CanA1 + chr3R 31042164 intron CanA1 + chr3R 31042238 intron CanA1 + chr3R_14_31040001 chr3R_31040001 RAL-374 1915 chr3R 31067036 31067056 chr3R 31067158 31067167 6 127 0.0 3.0 1.5 2.4 131 chr3R 31067036 intron Sox100B + chr3R 31067102 intron Sox100B + chr3R 31067167 intron Sox100B + chr3R_6_31065001 chr3R_31065001 RAL-374 1916 chr3R 31074217 31074240 chr3R 31081834 31081849 springer 4 7616 3.5 2.0 2.8 1.1 7632 chr3R 31074217 intron Sox100B + chr3R 31078033 intron Sox100B + chr3R 31081849 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-374 1917 chr3R 31146731 31146783 chr3R 31146825 31146879 14 95 3.0 5.5 4.2 2.7 148 chr3R 31146731 intron Gycbeta100B + chr3R 31146805 intron Gycbeta100B + chr3R 31146879 intron Gycbeta100B + chr3R_14_31145001 chr3R_31145001 RAL-374 1918 chr3R 31274341 31274395 chr3R 31274439 31274493 9 95 4.0 2.0 3.0 2.2 152 chr3R 31274341 intergenic not near genes chr3R 31274417 intergenic not near genes chr3R 31274493 intergenic not near genes chr3R_9_31270001 chr3R_31270001 RAL-374 1919 chr3R 31279369 31279398 chr3R 31285580 31285600 diver 7 6205 4.0 4.0 4.0 1.4 6231 chr3R 31279369 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-374 1920 chr3R 31348035 31348087 chr3R 31348132 31348184 14 96 2.0 2.0 2.0 4.7 149 chr3R 31348035 intron CG34347 + chr3R 31348110 intron CG34347 + chr3R 31348184 intron CG34347 + chr3R_14_31345001 chr3R_31345001 RAL-374 1921 chr3R 31412689 31412732 chr3R 31412802 31412843 5 112 2.0 0.5 1.2 2.3 154 chr3R 31412689 intron Gprk2 + chr3R 31412766 intron Gprk2 + chr3R 31412843 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-374 1922 chr3R 31413072 31413110 chr3R 31418292 31418311 copia 9 5215 1.0 0.0 0.5 6.0 5239 chr3R 31413072 intron Gprk2 + chr3R 31415692 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-374 1923 chr3R 31426878 31426910 chr3R 31426990 31427022 10 111 3.5 6.0 4.8 1.7 144 chr3R 31426878 intron Gprk2 + chr3R 31426950 intron Gprk2 + chr3R 31427022 intron Gprk2 + chr3R_10_31425001 chr3R_31425001 RAL-374 1924 chr3R 31435348 31435386 chr3R 31435520 31435558 12 170 3.5 5.0 4.2 2.3 210 chr3R 31435348 intron Gprk2 + chr3R 31435453 intron Gprk2 + chr3R 31435558 intron Gprk2 + chr3R_12_31435001 chr3R_31435001 RAL-374 1925 chr3R 31606135 31606169 chr3R 31606300 31606350 5 172 2.0 0.0 1.0 2.5 215 chr3R 31606135 intron CycG - chr3R 31606242 intron CycG - chr3R 31606350 intron CycG - chr3R_5_31605001 chr3R_31605001 RAL-374 1926 chr3R 31630046 31630083 chr3R 31630171 31630207 11 125 1.5 1.0 1.2 5.0 161 chr3R 31630046 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630207 intron kek6 + chr3R_11_31630001 chr3R_31630001 RAL-374 1927 chr3R 31691513 31691547 chr3R 31696299 31696309 Doc 9 4780 3.0 1.5 2.2 2.8 4796 chr3R 31691513 intergenic not near genes chr3R 31693911 intergenic not near genes chr3R 31696309 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-374 1928 chr3R 31774851 31774896 chr3R 31775015 31775061 7 165 3.5 2.0 2.8 1.8 210 chr3R 31774851 3` UTR sip3 + chr3R 31774956 3` UTR sip3 + chr3R 31775061 3` UTR,3` UTR sip3 +,CG2126 - chr3R_7_31770001 chr3R_31770001 RAL-374 1929 chr3R 31860263 31860296 chr3R 31860360 31860396 13 97 7.5 6.5 7.0 1.6 133 chr3R 31860263 intron heph - chr3R 31860330 intron heph - chr3R 31860396 intron heph - chr3R_13_31860001 chr3R_31860001 RAL-374 1930 chr3R 31915474 31915512 chr3R 31915598 31915612 4 118 2.5 2.0 2.2 1.2 138 chr3R 31915474 intron heph - chr3R 31915543 intron heph - chr3R 31915612 intron heph - chr3R_4_31915001 chr3R_31915001 RAL-374 1931 chr3R 31931174 31931208 chr3R 31931277 31931311 9 103 2.0 3.0 2.5 2.6 137 chr3R 31931174 intron heph - chr3R 31931242 intron heph - chr3R 31931311 intron heph - chr3R_9_31930001 chr3R_31930001 RAL-374 1932 chr3R 31997975 31998020 chr3R 32005462 32005510 blood 11 7489 1.5 2.5 2.0 3.7 7535 chr3R 31997975 intron heph - chr3R 32001742 intron heph - chr3R 32005510 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-374 1933 chr4 257382 257434 chr4 257571 257624 11 190 1.5 2.0 1.8 3.9 242 chr4 257382 exon RhoGAP102A + chr4 257503 intron RhoGAP102A + chr4 257624 intron RhoGAP102A + chr4_11_255001 chr4_255001 RAL-374 1934 chr4 280788 280805 chr4 281433 281448 5 647 2.5 1.0 1.8 1.8 660 chr4 280788 intron Syt7 - chr4 281118 intron Syt7 - chr4 281448 intron Syt7 - chr4_5_280001 chr4_280001 RAL-374 1935 chr4 314498 314527 chr4 314596 314624 5 98 1.5 2.0 1.8 1.8 126 chr4 314498 intergenic Zip102B -,CG32850 + chr4 314561 intergenic CG32850 +,Zip102B - chr4 314624 intergenic CG32850 + chr4_5_310001 chr4_310001 RAL-374 1936 chr4 368683 368708 chr4 368835 368860 4 152 0.5 3.0 1.8 1.4 177 chr4 368683 intron Hcf + chr4 368772 intron Hcf + chr4 368860 intron Hcf + chr4_4_365001 chr4_365001 RAL-374 1937 chr4 662168 662205 chr4 662833 662870 INE-1 9 662 0.0 1.5 0.8 5.0 702 chr4 662168 intron gw - chr4 662519 intron gw - chr4 662870 5` UTR gw - chr4_9_660001 chr4_660001 RAL-374 1938 chr4 671587 671633 chr4 680187 680229 Tirant 15 8599 2.0 2.5 2.2 4.7 8642 chr4 671587 intron CG11360 + chr4 675908 intron CG11360 + chr4 680229 intron CG11360 + chr4_15_675001 chr4_675001 RAL-374 1939 chrX 295836 295875 chrX 303476 303514 412 5 7640 1.0 1.5 1.2 2.3 7678 chrX 295836 intron CG3777 + chrX 299675 intron CG3777 + chrX 303514 intron CG3777 + chrX_5_295001 chrX_295001 RAL-374 1940 chrX 318477 318496 chrX 323583 323602 flea 4 5106 2.0 3.5 2.8 1.1 5125 chrX 318477 intron,intron CG3777 +,CG32816 - chrX 321040 intron,intron CG3777 +,CG32816 - chrX 323602 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-374 1941 chrX 325620 325649 chrX 325725 325752 8 103 1.5 2.5 2.0 2.7 132 chrX 325620 intron,intron CG3777 +,CG32816 - chrX 325686 intron,intron CG3777 +,CG32816 - chrX 325752 intron,intron CG3777 +,CG32816 - chrX_8_325001 chrX_325001 RAL-374 1942 chrX 428398 428446 chrX 434603 434651 3S18 9 6205 3.5 0.5 2.0 3.0 6253 chrX 428398 intron CG32816 - chrX 431524 intron CG32816 - chrX 434651 intron CG32816 - chrX_9_430001 chrX_430001 RAL-374 1943 chrX 440412 440434 chrX 440617 440641 4 206 5.5 2.5 4.0 0.8 229 chrX 440412 intron CG32816 - chrX 440526 intron CG32816 - chrX 440641 intron CG32816 - chrX_4_440001 chrX_440001 RAL-374 1944 chrX 440441 440451 chrX 440614 440658 5 195 3.0 2.5 2.8 1.3 217 chrX 440441 intron CG32816 - chrX 440550 intron CG32816 - chrX 440658 intron CG32816 - chrX_5_440001 chrX_440001 RAL-374 1945 chrX 450345 450384 chrX 450443 450482 8 98 2.0 4.5 3.2 1.9 137 chrX 450345 intron CG32816 - chrX 450414 intron CG32816 - chrX 450482 intron CG32816 - chrX_8_450001 chrX_450001 RAL-374 1946 chrX 494607 494621 chrX 494712 494733 4 110 4.5 2.5 3.5 0.9 126 chrX 494607 intergenic CG17778 + chrX 494670 5` UTR CG17778 + chrX 494733 intron CG17778 + chrX_4_490001 chrX_490001 RAL-374 1947 chrX 547612 547656 chrX 547876 547920 8 264 2.5 1.0 1.8 2.9 308 chrX 547612 intron Appl + chrX 547766 intron Appl + chrX 547920 intron Appl + chrX_8_545001 chrX_545001 RAL-374 1948 chrX 551421 551453 chrX 559000 559014 412 4 7574 2.0 2.0 2.0 1.3 7593 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559014 intron Appl + chrX_4_555001 chrX_555001 RAL-374 1949 chrX 667645 667664 chrX 667749 667767 5 104 2.5 0.0 1.2 2.3 122 chrX 667645 intergenic not near genes chrX 667706 intergenic not near genes chrX 667767 intergenic not near genes chrX_5_665001 chrX_665001 RAL-374 1950 chrX 670260 670295 chrX 670360 670390 4 94 0.5 1.0 0.8 2.2 130 chrX 670260 intergenic not near genes chrX 670325 intergenic not near genes chrX 670390 intergenic not near genes chrX_4_670001 chrX_670001 RAL-374 1951 chrX 680824 680870 chrX 680925 680973 5 101 1.0 2.0 1.5 2.0 149 chrX 680824 intergenic not near genes chrX 680898 intergenic not near genes chrX 680973 intergenic not near genes chrX_5_680001 chrX_680001 RAL-374 1952 chrX 706770 706827 chrX 707162 707211 7 387 0.0 1.5 0.8 3.9 441 chrX 706770 intron sdk + chrX 706990 intron sdk + chrX 707211 intron sdk + chrX_7_705001 chrX_705001 RAL-374 1953 chrX 802270 802319 chrX 802365 802410 10 91 2.5 3.0 2.8 2.6 140 chrX 802270 exon CG13359 - chrX 802340 exon CG13359 - chrX 802410 exon CG13359 - chrX_10_800001 chrX_800001 RAL-374 1954 chrX 827587 827602 chrX 835399 835414 roo 4 7812 3.0 5.0 4.0 0.8 7827 chrX 827587 intron CG43867 - chrX 831500 intron CG43867 - chrX 835414 intron CG43867 - chrX_4_830001 chrX_830001 RAL-374 1955 chrX 827603 827632 chrX 835395 835429 roo 10 7805 1.5 5.0 3.2 2.4 7826 chrX 827603 intron CG43867 - chrX 831516 intron CG43867 - chrX 835429 intron CG43867 - chrX_10_830001 chrX_830001 RAL-374 1956 chrX 906689 906733 chrX 908498 908542 S-element 7 1808 2.5 4.5 3.5 1.6 1853 chrX 906689 intron CG43867 - chrX 907616 intron CG43867 - chrX 908542 intron CG43867 - chrX_7_905001 chrX_905001 RAL-374 1957 chrX 1051056 1051084 chrX 1051154 1051182 4 98 7.0 5.5 6.2 0.6 126 chrX 1051056 intron CR44779 + chrX 1051119 intron CR44779 + chrX 1051182 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-374 1958 chrX 1357765 1357782 chrX 1367955 1367971 Doc 4 10189 4.0 3.0 3.5 0.9 10206 chrX 1357765 intergenic png - chrX 1362868 intergenic not near genes chrX 1367971 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-374 1959 chrX 1357784 1357797 chrX 1367941 1367987 Doc 5 10183 1.5 2.5 2.0 1.7 10203 chrX 1357784 intergenic png - chrX 1362886 intergenic not near genes chrX 1367987 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-374 1960 chrX 1518033 1518069 chrX 1523455 1523491 jockey 6 5420 1.5 3.5 2.5 1.7 5458 chrX 1518033 intergenic inc + chrX 1520762 intergenic not near genes chrX 1523491 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-374 1961 chrX 1627979 1627997 chrX 1635450 1635462 gtwin 4 7474 3.0 3.0 3.0 1.0 7483 chrX 1627979 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635462 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-374 1962 chrX 1930521 1930563 chrX 1938112 1938154 opus 7 7590 1.5 1.5 1.5 2.8 7633 chrX 1930521 intergenic CG11596 + chrX 1934338 intergenic not near genes chrX 1938154 3` UTR CG3857 - chrX_7_1930001 chrX_1930001 RAL-374 1963 chrX 2286814 2286843 chrX 2286913 2286936 5 97 3.5 2.0 2.8 1.3 122 chrX 2286814 intron CG2865 - chrX 2286875 intron CG2865 - chrX 2286936 intron CG2865 - chrX_5_2285001 chrX_2285001 RAL-374 1964 chrX 2385713 2385751 chrX 2385811 2385849 4 91 1.5 1.5 1.5 1.6 136 chrX 2385713 exon PsGEF - chrX 2385781 intron PsGEF - chrX 2385849 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-374 1965 chrX 2568185 2568224 chrX 2568443 2568491 7 262 2.5 3.0 2.8 1.8 306 chrX 2568185 intron Pdfr + chrX 2568338 intron Pdfr + chrX 2568491 intron Pdfr + chrX_7_2565001 chrX_2565001 RAL-374 1966 chrX 2578809 2578845 chrX 2578933 2578969 14 123 3.5 3.5 3.5 3.1 160 chrX 2578809 intergenic Pdfr +,Vha36-3 - chrX 2578889 intergenic Vha36-3 -,Pdfr + chrX 2578969 intergenic Vha36-3 -,Pdfr + chrX_14_2575001 chrX_2575001 RAL-374 1967 chrX 2610373 2610378 chrX 2617510 2617515 HMS-Beagle 4 7137 3.5 2.5 3.0 1.0 7142 chrX 2610373 intergenic CG8636 - chrX 2613944 intergenic not near genes chrX 2617515 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-374 1968 chrX 2664391 2664411 chrX 2665557 2665577 1360 5 1165 3.5 6.5 5.0 0.8 1186 chrX 2664391 intron sgg + chrX 2664984 intron sgg + chrX 2665577 intron sgg + chrX_5_2660001 chrX_2660001 RAL-374 1969 chrX 2844886 2844930 chrX 2852316 2852360 mdg1 6 7430 3.0 4.0 3.5 1.3 7474 chrX 2844886 intron kirre + chrX 2848623 intron kirre + chrX 2852360 intron kirre + chrX_6_2845001 chrX_2845001 RAL-374 1970 chrX 2870636 2870681 chrX 2870742 2870787 7 102 1.0 5.0 3.0 1.8 151 chrX 2870636 intron kirre + chrX 2870712 intron kirre + chrX 2870787 intron kirre + chrX_7_2870001 chrX_2870001 RAL-374 1971 chrX 2917399 2917443 chrX 2917576 2917620 8 177 1.5 1.0 1.2 3.6 221 chrX 2917399 intron kirre + chrX 2917510 intron kirre + chrX 2917620 intron kirre + chrX_8_2915001 chrX_2915001 RAL-374 1972 chrX 3031156 3031175 chrX 3031259 3031277 4 103 1.0 3.0 2.0 1.3 121 chrX 3031156 intron kirre + chrX 3031216 intron kirre + chrX 3031277 intron kirre + chrX_4_3030001 chrX_3030001 RAL-374 1973 chrX 3058004 3058051 chrX 3058265 3058312 pogo 6 261 2.5 1.5 2.0 2.0 308 chrX 3058004 intron kirre + chrX 3058158 intron kirre + chrX 3058312 intron kirre + chrX_6_3055001 chrX_3055001 RAL-374 1974 chrX 3075617 3075661 chrX 3080940 3080987 Transpac 7 5325 2.0 3.0 2.5 2.0 5370 chrX 3075617 intron kirre + chrX 3078302 intron kirre + chrX 3080987 intron kirre + chrX_7_3075001 chrX_3075001 RAL-374 1975 chrX 3203445 3203489 chrX 3203664 3203707 11 217 2.0 2.5 2.2 3.4 262 chrX 3203445 intron dnc + chrX 3203576 intron dnc + chrX 3203707 intron dnc + chrX_11_3200001 chrX_3200001 RAL-374 1976 chrX 3243619 3243654 chrX 3243728 3243764 5 110 1.0 1.0 1.0 2.5 145 chrX 3243619 intron dnc + chrX 3243692 intron dnc + chrX 3243764 intron dnc + chrX_5_3240001 chrX_3240001 RAL-374 1977 chrX 3334313 3334329 chrX 3334411 3334427 4 98 1.0 2.5 1.8 1.4 114 chrX 3334313 exon,intron dnc +,CR44886 - chrX 3334370 intron,intron dnc +,CR44886 - chrX 3334427 intron,intron dnc +,CR44886 - chrX_4_3330001 chrX_3330001 RAL-374 1978 chrX 3493077 3493115 chrX 3502256 3502293 roo 6 9177 1.0 1.0 1.0 3.0 9216 chrX 3493077 intron,intron CR44999 +,Gas8 - chrX 3497685 intron,intron CR44999 +,Gas8 - chrX 3502293 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-374 1979 chrX 3597535 3597575 chrX 3619723 3619762 roo 6 22188 2.5 1.5 2.0 2.0 22227 chrX 3597535 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619762 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-374 1980 chrX 3620446 3620489 chrX 3620565 3620608 6 115 0.5 6.0 3.2 1.4 162 chrX 3620446 intron AstA-R1 + chrX 3620527 intron AstA-R1 + chrX 3620608 intron AstA-R1 + chrX_6_3620001 chrX_3620001 RAL-374 1981 chrX 3630527 3630574 chrX 3630623 3630670 11 95 2.5 2.0 2.2 3.4 143 chrX 3630527 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630670 intron AstA-R1 + chrX_11_3630001 chrX_3630001 RAL-374 1982 chrX 3726745 3726769 chrX 3730160 3730186 NOF 6 3416 3.0 0.0 1.5 2.4 3441 chrX 3726745 intron tlk + chrX 3728466 intron tlk + chrX 3730186 intron tlk + chrX_6_3725001 chrX_3725001 RAL-374 1983 chrX 3881254 3881304 chrX 3881412 3881463 8 159 2.0 2.5 2.2 2.5 209 chrX 3881254 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881463 exon VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-374 1984 chrX 3986847 3986894 chrX 3994500 3994547 412 11 7653 3.0 1.5 2.2 3.4 7700 chrX 3986847 intergenic not near genes chrX 3990697 intergenic not near genes chrX 3994547 intergenic not near genes chrX_11_3990001 chrX_3990001 RAL-374 1985 chrX 4132650 4132700 chrX 4132839 4132888 6 189 1.5 1.5 1.5 2.4 238 chrX 4132650 3` UTR GlcAT-I + chrX 4132769 3` UTR GlcAT-I + chrX 4132888 3` UTR Fas2 - chrX_6_4130001 chrX_4130001 RAL-374 1986 chrX 4157881 4157912 chrX 4164954 4164985 297 6 7070 2.5 1.0 1.8 2.1 7104 chrX 4157881 intron Fas2 - chrX 4161433 intron Fas2 - chrX 4164985 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-374 1987 chrX 4229964 4229990 chrX 4230100 4230125 7 135 2.5 1.0 1.8 2.5 161 chrX 4229964 intergenic not near genes chrX 4230044 intergenic not near genes chrX 4230125 intergenic not near genes chrX_7_4230001 chrX_4230001 RAL-374 1988 chrX 4358070 4358111 chrX 4358189 4358233 9 122 4.0 0.0 2.0 3.0 163 chrX 4358070 intron norpA + chrX 4358152 intron norpA + chrX 4358233 intron norpA + chrX_9_4355001 chrX_4355001 RAL-374 1989 chrX 4361445 4361458 chrX 4361534 4361557 4 96 0.5 2.0 1.2 1.8 112 chrX 4361445 intron norpA + chrX 4361501 intron norpA + chrX 4361557 intron norpA + chrX_4_4360001 chrX_4360001 RAL-374 1990 chrX 4525740 4525767 chrX 4525852 4525879 7 111 1.5 3.5 2.5 2.0 139 chrX 4525740 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525879 intron CR32773 - chrX_7_4525001 chrX_4525001 RAL-374 1991 chrX 4700382 4700425 chrX 4700744 4700751 jockey 5 355 1.5 3.0 2.2 1.6 369 chrX 4700382 3` UTR ctp + chrX 4700566 3` UTR ctp + chrX 4700751 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-374 1992 chrX 4744139 4744166 chrX 4744257 4744284 5 118 2.5 0.5 1.5 2.0 145 chrX 4744139 intergenic not near genes chrX 4744212 intergenic not near genes chrX 4744284 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-374 1993 chrX 4763244 4763279 chrX 4763749 4763787 Stalker4 5 507 2.0 1.5 1.8 1.8 543 chrX 4763244 intergenic not near genes chrX 4763516 intergenic not near genes chrX 4763787 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-374 1994 chrX 4792367 4792395 chrX 4792820 4792832 jockey 7 450 1.0 2.0 1.5 2.8 465 chrX 4792367 intergenic not near genes chrX 4792600 intergenic not near genes chrX 4792832 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-374 1995 chrX 4827215 4827228 chrX 4827322 4827335 5 106 6.0 4.5 5.2 0.8 120 chrX 4827215 intergenic CG12682 + chrX 4827275 intergenic CG12682 + chrX 4827335 intergenic not near genes chrX_5_4825001 chrX_4825001 RAL-374 1996 chrX 4827990 4828001 chrX 4835337 4835342 Stalker4 4 7353 1.5 3.0 2.2 1.2 7352 chrX 4827990 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835342 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-374 1997 chrX 5076378 5076430 chrX 5076772 5076792 6 384 0.5 0.5 0.5 4.0 414 chrX 5076378 3` UTR CG32767 - chrX 5076585 3` UTR CG32767 - chrX 5076792 3` UTR CG32767 - chrX_6_5075001 chrX_5075001 RAL-374 1998 chrX 5096267 5096293 chrX 5103838 5103878 springer 5 7581 2.0 1.0 1.5 2.0 7611 chrX 5096267 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103878 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-374 1999 chrX 5473580 5473605 chrX 5473676 5473700 4 96 3.5 3.0 3.2 1.0 120 chrX 5473580 intron SPR + chrX 5473640 intron SPR + chrX 5473700 intron SPR + chrX_4_5470001 chrX_5470001 RAL-374 2000 chrX 5473613 5473620 chrX 5473675 5473716 5 83 3.0 3.0 3.0 1.2 103 chrX 5473613 intron SPR + chrX 5473664 intron SPR + chrX 5473716 intron SPR + chrX_5_5470001 chrX_5470001 RAL-374 2001 chrX 5478377 5478409 chrX 5478483 5478508 5 106 1.5 3.0 2.2 1.6 131 chrX 5478377 intron SPR + chrX 5478442 intron SPR + chrX 5478508 intron SPR + chrX_5_5475001 chrX_5475001 RAL-374 2002 chrX 5883793 5883837 chrX 5884054 5884098 pogo 11 260 4.5 3.0 3.8 2.3 305 chrX 5883793 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884098 intron CR45668 - chrX_11_5880001 chrX_5880001 RAL-374 2003 chrX 5884145 5884191 chrX 5884406 5884452 pogo 12 261 2.5 2.0 2.2 3.8 307 chrX 5884145 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884452 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-374 2004 chrX 6118681 6118726 chrX 6118783 6118806 11 99 3.0 3.0 3.0 2.8 125 chrX 6118681 intron Ca-alpha1T - chrX 6118744 intron Ca-alpha1T - chrX 6118806 intron Ca-alpha1T - chrX_11_6115001 chrX_6115001 RAL-374 2005 chrX 6171577 6171613 chrX 6179030 6179065 Quasimodo 5 7453 4.0 4.0 4.0 1.0 7488 chrX 6171577 intron Ca-alpha1T - chrX 6175321 intron Ca-alpha1T - chrX 6179065 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-374 2006 chrX 6185808 6186037 chrX 6185913 6186162 13 120 3.0 8.5 5.8 1.9 354 chrX 6185808 intron Ca-alpha1T - chrX 6185985 intron Ca-alpha1T - chrX 6186162 intron Ca-alpha1T - chrX_13_6185001 chrX_6185001 RAL-374 2007 chrX 6198814 6198824 chrX 6198922 6198933 4 109 2.5 3.5 3.0 1.0 119 chrX 6198814 intergenic CG32751 -,CG43090 - chrX 6198874 intergenic CG32751 -,CG43090 - chrX 6198933 intergenic CG32751 -,CG43090 - chrX_4_6195001 chrX_6195001 RAL-374 2008 chrX 6215330 6215371 chrX 6215433 6215470 9 102 0.0 3.0 1.5 3.6 140 chrX 6215330 intergenic not near genes chrX 6215400 intergenic not near genes chrX 6215470 intergenic not near genes chrX_9_6215001 chrX_6215001 RAL-374 2009 chrX 6312178 6312223 chrX 6312281 6312326 11 103 2.5 3.5 3.0 2.8 148 chrX 6312178 intron CG15894 + chrX 6312252 intron CG15894 + chrX 6312326 intron CG15894 + chrX_11_6310001 chrX_6310001 RAL-374 2010 chrX 6335212 6335244 chrX 6337742 6337773 Tirant 5 2529 0.0 3.0 1.5 2.0 2561 chrX 6335212 intergenic not near genes chrX 6336492 intergenic not near genes chrX 6337773 5` UTR CG3842 + chrX_5_6335001 chrX_6335001 RAL-374 2011 chrX 6392865 6392891 chrX 6397634 6397676 Doc 6 4782 4.5 3.0 3.8 1.2 4811 chrX 6392865 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397676 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-374 2012 chrX 6562802 6562850 chrX 6571304 6571306 Tirant 7 8492 4.0 1.5 2.8 1.8 8504 chrX 6562802 intron CG34417 + chrX 6567054 intron CG34417 + chrX 6571306 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-374 2013 chrX 6605461 6605501 chrX 6608503 6608543 Burdock 7 3042 2.5 4.0 3.2 1.7 3082 chrX 6605461 intron pigs + chrX 6607002 intron pigs + chrX 6608543 intron pigs + chrX_7_6605001 chrX_6605001 RAL-374 2014 chrX 6618449 6618469 chrX 6618547 6618567 4 98 2.5 5.0 3.8 0.8 118 chrX 6618449 intron pigs + chrX 6618508 intron pigs + chrX 6618567 intron pigs + chrX_4_6615001 chrX_6615001 RAL-374 2015 chrX 6737499 6737546 chrX 6737601 6737613 13 96 3.0 1.5 2.2 4.1 114 chrX 6737499 intron CG3168 - chrX 6737556 intron CG3168 - chrX 6737613 intron CG3168 - chrX_13_6735001 chrX_6735001 RAL-374 2016 chrX 6865771 6865793 chrX 6865870 6865878 4 96 2.0 3.5 2.8 1.1 107 chrX 6865771 intron CG14434 - chrX 6865824 intron CG14434 - chrX 6865878 intron CG14434 - chrX_4_6865001 chrX_6865001 RAL-374 2017 chrX 6895872 6895883 chrX 6896194 6896204 5 321 1.5 0.0 0.8 2.8 332 chrX 6895872 intergenic not near genes chrX 6896038 intergenic not near genes chrX 6896204 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-374 2018 chrX 6897647 6897703 chrX 6897789 6897833 4 133 0.0 1.5 0.8 2.2 186 chrX 6897647 intergenic not near genes chrX 6897740 intergenic not near genes chrX 6897833 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-374 2019 chrX 6913866 6913916 chrX 6914160 6914175 9 282 1.5 0.0 0.8 5.0 309 chrX 6913866 intron CG14431 + chrX 6914020 intron CG14431 + chrX 6914175 intron CG14431 + chrX_9_6910001 chrX_6910001 RAL-374 2020 chrX 6989487 6989532 chrX 6989594 6989639 9 106 2.0 2.5 2.2 2.8 152 chrX 6989487 intron ogre - chrX 6989563 intron ogre - chrX 6989639 intron ogre - chrX_9_6985001 chrX_6985001 RAL-374 2021 chrX 7023585 7023631 chrX 7030995 7031006 Tabor 5 7403 4.5 1.5 3.0 1.2 7421 chrX 7023585 intron CG12541 - chrX 7027296 intron CG12541 - chrX 7031006 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-374 2022 chrX 7125228 7125271 chrX 7134407 7134450 roo 9 9178 1.0 1.0 1.0 4.5 9222 chrX 7125228 intergenic not near genes chrX 7129839 intergenic not near genes chrX 7134450 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-374 2023 chrX 7381155 7381176 chrX 7381256 7381279 4 102 3.0 3.5 3.2 1.0 124 chrX 7381155 intron,intron CR44357 -,CG1677 - chrX 7381217 intron,intron CR44357 -,CG1677 - chrX 7381279 intron,intron CR44357 -,CG1677 - chrX_4_7380001 chrX_7380001 RAL-374 2024 chrX 7702509 7702524 chrX 7702609 7702636 5 109 0.5 3.0 1.8 1.8 127 chrX 7702509 intron CHES-1-like - chrX 7702572 intron CHES-1-like - chrX 7702636 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-374 2025 chrX 7702892 7702921 chrX 7703351 7703380 jockey 8 457 5.5 4.5 5.0 1.3 488 chrX 7702892 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703380 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-374 2026 chrX 7737154 7737165 chrX 7737251 7737267 6 101 3.5 4.0 3.8 1.2 113 chrX 7737154 5` UTR Tom40 + chrX 7737210 intron Tom40 + chrX 7737267 intron Tom40 + chrX_6_7735001 chrX_7735001 RAL-374 2027 chrX 8031423 8031447 chrX 8035751 8035776 Juan 10 4328 4.5 3.0 3.8 2.1 4353 chrX 8031423 intergenic not near genes chrX 8033600 intergenic not near genes chrX 8035776 3` UTR CG2233 - chrX_10_8030001 chrX_8030001 RAL-374 2028 chrX 8364834 8364878 chrX 8365251 8365312 BS 8 429 3.0 0.0 1.5 3.2 478 chrX 8364834 intron nAChRalpha3 - chrX 8365073 intron nAChRalpha3 - chrX 8365312 intron nAChRalpha3 - chrX_8_8365001 chrX_8365001 RAL-374 2029 chrX 8536740 8536779 chrX 8536836 8536875 7 93 4.0 5.0 4.5 1.3 135 chrX 8536740 intron Nrg + chrX 8536808 intron Nrg + chrX 8536875 intron Nrg + chrX_7_8535001 chrX_8535001 RAL-374 2030 chrX 8562644 8562678 chrX 8562741 8562775 4 97 0.5 1.5 1.0 2.0 131 chrX 8562644 intron Trf4-1 + chrX 8562710 intron Trf4-1 + chrX 8562775 intron Trf4-1 + chrX_4_8560001 chrX_8560001 RAL-374 2031 chrX 8771247 8771253 chrX 8771345 8771351 5 97 2.0 3.0 2.5 1.4 104 chrX 8771247 intron Lim1 - chrX 8771299 intron Lim1 - chrX 8771351 intron Lim1 - chrX_5_8770001 chrX_8770001 RAL-374 2032 chrX 8897453 8897463 chrX 8897624 8897633 4 171 0.5 4.5 2.5 1.1 180 chrX 8897453 intron Moe - chrX 8897543 intron Moe - chrX 8897633 intron Moe - chrX_4_8895001 chrX_8895001 RAL-374 2033 chrX 8922313 8922356 chrX 8922767 8922809 jockey 8 450 1.5 2.5 2.0 2.7 496 chrX 8922313 intron rdgA + chrX 8922561 intron rdgA + chrX 8922809 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-374 2034 chrX 8948741 8948787 chrX 8956271 8956317 roo 6 7530 1.5 1.5 1.5 2.4 7576 chrX 8948741 intron rdgA + chrX 8952529 intron rdgA + chrX 8956317 intron rdgA + chrX_6_8950001 chrX_8950001 RAL-374 2035 chrX 9062707 9062746 chrX 9062805 9062844 5 96 0.5 0.0 0.2 4.2 137 chrX 9062707 intron CG15365 - chrX 9062776 intron CG15365 - chrX 9062844 intron CG15365 - chrX_5_9060001 chrX_9060001 RAL-374 2036 chrX 9337925 9337972 chrX 9338037 9338075 7 110 2.5 1.0 1.8 2.5 150 chrX 9337925 intron CG34449 - chrX 9338000 intron CG34449 - chrX 9338075 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-374 2037 chrX 9508120 9508161 chrX 9509658 9509699 jockey 8 1533 1.5 2.0 1.8 2.9 1579 chrX 9508120 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509699 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-374 2038 chrX 9664049 9664095 chrX 9664148 9664194 6 96 3.0 2.5 2.8 1.6 145 chrX 9664049 intergenic not near genes chrX 9664122 intergenic not near genes chrX 9664194 intergenic not near genes chrX_6_9660001 chrX_9660001 RAL-374 2039 chrX 9758028 9758079 chrX 9758132 9758184 11 105 0.5 0.0 0.2 9.2 156 chrX 9758028 intergenic not near genes chrX 9758106 intergenic not near genes chrX 9758184 intergenic not near genes chrX_11_9755001 chrX_9755001 RAL-374 2040 chrX 9791854 9791877 chrX 9791971 9791992 8 116 3.5 3.0 3.2 1.9 138 chrX 9791854 intron CG32698 + chrX 9791923 intron CG32698 + chrX 9791992 intron CG32698 + chrX_8_9790001 chrX_9790001 RAL-374 2041 chrX 9988890 9988938 chrX 9989050 9989098 10 157 0.5 3.0 1.8 3.6 208 chrX 9988890 intergenic not near genes chrX 9988994 intergenic not near genes chrX 9989098 intergenic not near genes chrX_10_9985001 chrX_9985001 RAL-374 2042 chrX 10086041 10086053 chrX 10086305 10086326 6 267 3.0 3.0 3.0 1.5 285 chrX 10086041 5` UTR CG2974 - chrX 10086184 intergenic CG2974 -,RhoU + chrX 10086326 intergenic CG2974 -,RhoU + chrX_6_10085001 chrX_10085001 RAL-374 2043 chrX 10138201 10138247 chrX 10145725 10145771 412 7 7524 0.0 2.5 1.2 3.2 7570 chrX 10138201 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145771 intron,intron RhoU +,CR44894 - chrX_7_10140001 chrX_10140001 RAL-374 2044 chrX 10177670 10177701 chrX 10177881 10177911 9 211 2.0 5.5 3.8 1.9 241 chrX 10177670 intron,intron CR44894 -,CG43902 + chrX 10177790 intron,intron CR44894 -,CG43902 + chrX 10177911 intron,intron CR44894 -,CG43902 + chrX_9_10175001 chrX_10175001 RAL-374 2045 chrX 10216837 10216847 chrX 10216938 10216948 5 100 2.0 4.5 3.2 1.2 111 chrX 10216837 3` UTR l(1)G0230 + chrX 10216892 3` UTR l(1)G0230 + chrX 10216948 3` UTR l(1)G0230 + chrX_5_10215001 chrX_10215001 RAL-374 2046 chrX 10550321 10550363 chrX 10550419 10550460 4 98 1.5 0.5 1.0 2.0 139 chrX 10550321 intron spri - chrX 10550390 intron spri - chrX 10550460 intron spri - chrX_4_10550001 chrX_10550001 RAL-374 2047 chrX 10550861 10550885 chrX 10552330 10552368 hobo 5 1475 0.0 1.5 0.8 2.8 1507 chrX 10550861 intron spri - chrX 10551614 intron spri - chrX 10552368 intron spri - chrX_5_10550001 chrX_10550001 RAL-374 2048 chrX 10686041 10686076 chrX 10691198 10691233 roo 5 5157 2.0 3.0 2.5 1.4 5192 chrX 10686041 intron X11Lbeta + chrX 10688637 intron X11Lbeta + chrX 10691233 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-374 2049 chrX 10694143 10694169 chrX 10694239 10694267 5 95 6.5 2.5 4.5 0.9 124 chrX 10694143 intron X11Lbeta + chrX 10694205 intron X11Lbeta + chrX 10694267 intron X11Lbeta + chrX_5_10690001 chrX_10690001 RAL-374 2050 chrX 10719125 10719147 chrX 10719229 10719251 6 104 0.0 5.0 2.5 1.7 126 chrX 10719125 intron CG32676 - chrX 10719188 intron CG32676 - chrX 10719251 intron CG32676 - chrX_6_10715001 chrX_10715001 RAL-374 2051 chrX 10803014 10803042 chrX 10803119 10803146 6 105 4.5 5.0 4.8 1.0 132 chrX 10803014 intron Imp - chrX 10803080 intron Imp - chrX 10803146 intron Imp - chrX_6_10800001 chrX_10800001 RAL-374 2052 chrX 11000947 11000986 chrX 11001081 11001126 4 127 1.0 2.5 1.8 1.4 179 chrX 11000947 intron CG42339 - chrX 11001036 intron CG42339 - chrX 11001126 intron CG42339 - chrX_4_11000001 chrX_11000001 RAL-374 2053 chrX 11069140 11069192 chrX 11069303 11069326 6 158 0.5 0.0 0.2 5.0 186 chrX 11069140 intergenic not near genes chrX 11069233 intergenic not near genes chrX 11069326 intergenic not near genes chrX_6_11065001 chrX_11065001 RAL-374 2054 chrX 11095983 11096012 chrX 11103105 11103134 HMS-Beagle 5 7122 2.5 4.5 3.5 1.1 7151 chrX 11095983 intergenic not near genes chrX 11099558 intergenic not near genes chrX 11103134 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-374 2055 chrX 11166739 11166780 chrX 11166839 11166881 8 101 1.5 2.5 2.0 2.7 142 chrX 11166739 intergenic not near genes chrX 11166810 intergenic not near genes chrX 11166881 intergenic not near genes chrX_8_11165001 chrX_11165001 RAL-374 2056 chrX 11167773 11167796 chrX 11167869 11167879 6 100 1.5 0.5 1.0 3.0 106 chrX 11167773 intergenic antdh - chrX 11167826 intergenic antdh - chrX 11167879 intergenic antdh - chrX_6_11165001 chrX_11165001 RAL-374 2057 chrX 11184229 11184255 chrX 11189326 11189354 flea 5 5096 1.5 0.0 0.8 2.8 5125 chrX 11184229 intergenic not near genes chrX 11186792 intergenic not near genes chrX 11189354 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-374 2058 chrX 11193880 11193910 chrX 11194132 11194133 5 252 1.0 1.0 1.0 2.5 253 chrX 11193880 intergenic CR44765 + chrX 11194006 intergenic not near genes chrX 11194133 intergenic not near genes chrX_5_11190001 chrX_11190001 RAL-374 2059 chrX 11277354 11277638 chrX 11277468 11277739 9 106 1.5 0.0 0.8 5.0 385 chrX 11277354 intron CG44422 - chrX 11277546 intron CG44422 - chrX 11277739 intron CG44422 - chrX_9_11275001 chrX_11275001 RAL-374 2060 chrX 11424981 11425029 chrX 11425088 11425136 7 104 1.0 1.5 1.2 3.2 155 chrX 11424981 intron Gs2 + chrX 11425058 intron Gs2 + chrX 11425136 intron Gs2 + chrX_7_11425001 chrX_11425001 RAL-374 2061 chrX 11554859 11554894 chrX 11555255 11555290 6 397 5.5 17.0 11.2 0.5 431 chrX 11554859 3` UTR Drak + chrX 11555074 3` UTR CG1572 - chrX 11555290 3` UTR CG1572 - chrX_6_11555001 chrX_11555001 RAL-374 2062 chrX 11633396 11633432 chrX 11640470 11640506 297 6 7072 6.5 3.5 5.0 1.0 7110 chrX 11633396 intron Ptp10D + chrX 11636951 intron Ptp10D + chrX 11640506 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-374 2063 chrX 11645096 11645137 chrX 11648285 11648327 NOF 6 3189 1.5 1.0 1.2 2.7 3231 chrX 11645096 intron Ptp10D + chrX 11646712 intron Ptp10D + chrX 11648327 intron Ptp10D + chrX_6_11645001 chrX_11645001 RAL-374 2064 chrX 11936551 11936589 chrX 11936670 11936708 6 119 0.0 2.5 1.2 2.7 157 chrX 11936551 intron cac - chrX 11936630 intron cac - chrX 11936708 exon cac - chrX_6_11935001 chrX_11935001 RAL-374 2065 chrX 12038068 12038109 chrX 12038282 12038323 13 212 1.5 2.5 2.0 4.3 255 chrX 12038068 intergenic not near genes chrX 12038196 intergenic not near genes chrX 12038323 intergenic not near genes chrX_13_12035001 chrX_12035001 RAL-374 2066 chrX 12185348 12185384 chrX 12185444 12185483 5 94 1.0 3.0 2.0 1.7 135 chrX 12185348 intron Ten-a + chrX 12185416 intron Ten-a + chrX 12185483 intron Ten-a + chrX_5_12185001 chrX_12185001 RAL-374 2067 chrX 12231210 12231219 chrX 12231316 12231321 4 106 2.0 1.5 1.8 1.4 111 chrX 12231210 intron Ten-a + chrX 12231266 intron Ten-a + chrX 12231321 intron Ten-a + chrX_4_12230001 chrX_12230001 RAL-374 2068 chrX 12277288 12277334 chrX 12277568 12277590 7 273 1.0 1.0 1.0 3.5 302 chrX 12277288 intron Ten-a + chrX 12277439 intron Ten-a + chrX 12277590 intron Ten-a + chrX_7_12275001 chrX_12275001 RAL-374 2069 chrX 12350753 12350795 chrX 12350854 12350896 6 100 3.0 0.5 1.8 2.1 143 chrX 12350753 intergenic not near genes chrX 12350824 intergenic not near genes chrX 12350896 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-374 2070 chrX 12511324 12511346 chrX 12511428 12511449 4 104 0.0 2.0 1.0 2.0 125 chrX 12511324 intron CG2556 + chrX 12511386 intron CG2556 + chrX 12511449 intron CG2556 + chrX_4_12510001 chrX_12510001 RAL-374 2071 chrX 12785429 12785456 chrX 12785521 12785553 4 96 1.0 2.0 1.5 1.6 124 chrX 12785429 intergenic Pde9 -,CG32647 - chrX 12785491 intergenic Pde9 - chrX 12785553 intergenic Pde9 - chrX_4_12785001 chrX_12785001 RAL-374 2072 chrX 12859031 12859078 chrX 12859129 12859176 6 95 1.5 1.5 1.5 2.4 145 chrX 12859031 intron Pde9 - chrX 12859104 intron Pde9 - chrX 12859176 intron Pde9 - chrX_6_12855001 chrX_12855001 RAL-374 2073 chrX 12912611 12912639 chrX 12912728 12912756 4 117 1.5 0.0 0.8 2.2 145 chrX 12912611 5` UTR CR45625 + chrX 12912684 5` UTR CR45625 + chrX 12912756 5` UTR CR45625 + chrX_4_12910001 chrX_12910001 RAL-374 2074 chrX 12960744 12960787 chrX 12960845 12960888 7 101 2.0 0.0 1.0 3.5 144 chrX 12960744 3` UTR CG32642 + chrX 12960816 intergenic CG32642 + chrX 12960888 intergenic CG32642 + chrX_7_12960001 chrX_12960001 RAL-374 2075 chrX 13061336 13061369 chrX 13061467 13061500 4 130 1.5 0.5 1.0 2.0 164 chrX 13061336 intron rad + chrX 13061418 intron rad + chrX 13061500 intron rad + chrX_4_13060001 chrX_13060001 RAL-374 2076 chrX 13146584 13146622 chrX 13146692 13146730 5 108 3.5 4.0 3.8 1.0 146 chrX 13146584 intron CG32645 + chrX 13146657 intron CG32645 + chrX 13146730 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-374 2077 chrX 13161673 13161715 chrX 13161770 13161799 6 95 5.0 1.5 3.2 1.4 126 chrX 13161673 3` UTR CG12096 + chrX 13161736 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161799 3` UTR,3` UTR CG12096 +,CG34411 - chrX_6_13160001 chrX_13160001 RAL-374 2078 chrX 13238081 13238103 chrX 13238178 13238200 6 97 0.0 2.5 1.2 2.7 119 chrX 13238081 intron mew - chrX 13238140 intron mew - chrX 13238200 intron mew - chrX_6_13235001 chrX_13235001 RAL-374 2079 chrX 13272160 13272180 chrX 13272255 13272277 4 96 4.0 2.0 3.0 1.0 117 chrX 13272160 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272277 intron HDAC4 - chrX_4_13270001 chrX_13270001 RAL-374 2080 chrX 13369659 13369699 chrX 13369838 13369872 7 179 3.0 2.0 2.5 2.0 213 chrX 13369659 intron dmrt11E + chrX 13369766 intron dmrt11E + chrX 13369872 intron dmrt11E + chrX_7_13365001 chrX_13365001 RAL-374 2081 chrX 13401477 13401500 chrX 13401849 13401872 jockey 4 372 3.0 2.0 2.5 1.1 395 chrX 13401477 intergenic CG1673 +,CG12725 - chrX 13401674 intergenic CG12725 -,CG1673 + chrX 13401872 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-374 2082 chrX 13543308 13543320 chrX 13543557 13543570 4 250 2.5 11.0 6.8 0.5 262 chrX 13543308 intergenic Cpr12A + chrX 13543439 intergenic Cpr12A + chrX 13543570 intergenic Cpr12A + chrX_4_13540001 chrX_13540001 RAL-374 2083 chrX 14105016 14105046 chrX 14114185 14114198 roo 6 9163 2.0 1.5 1.8 2.1 9182 chrX 14105016 intergenic not near genes chrX 14109607 intergenic not near genes chrX 14114198 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-374 2084 chrX 14167387 14167429 chrX 14167502 14167544 4 115 1.0 1.5 1.2 1.8 157 chrX 14167387 intergenic not near genes chrX 14167466 intergenic not near genes chrX 14167544 intergenic not near genes chrX_4_14165001 chrX_14165001 RAL-374 2085 chrX 14209447 14209487 chrX 14209558 14209598 10 110 2.0 1.5 1.8 3.6 151 chrX 14209447 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209598 intron,intron l(1)G0007 +,l(1)G0469 - chrX_10_14205001 chrX_14205001 RAL-374 2086 chrX 14484948 14484995 chrX 14485056 14485104 5 108 0.0 2.5 1.2 2.3 156 chrX 14484948 intergenic not near genes chrX 14485026 intergenic not near genes chrX 14485104 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-374 2087 chrX 14550832 14550859 chrX 14550950 14550980 4 116 1.0 3.5 2.2 1.2 148 chrX 14550832 intergenic not near genes chrX 14550906 intergenic not near genes chrX 14550980 intergenic not near genes chrX_4_14550001 chrX_14550001 RAL-374 2088 chrX 14597713 14597767 chrX 14597811 14597846 5 94 1.5 2.0 1.8 1.8 133 chrX 14597713 intron CG9413 - chrX 14597780 intron CG9413 - chrX 14597846 intron CG9413 - chrX_5_14595001 chrX_14595001 RAL-374 2089 chrX 14628171 14628188 chrX 14628282 14628299 4 111 5.0 3.5 4.2 0.8 128 chrX 14628171 intron NetA - chrX 14628235 intron NetA - chrX 14628299 intron NetA - chrX_4_14625001 chrX_14625001 RAL-374 2090 chrX 14628191 14628205 chrX 14628280 14628299 5 99 3.5 3.5 3.5 1.1 108 chrX 14628191 intron NetA - chrX 14628245 intron NetA - chrX 14628299 intron NetA - chrX_5_14625001 chrX_14625001 RAL-374 2091 chrX 14636447 14636486 chrX 14641907 14641947 I-element 8 5456 3.0 3.5 3.2 1.9 5500 chrX 14636447 intron NetA - chrX 14639197 intron NetA - chrX 14641947 intron NetA - chrX_8_14635001 chrX_14635001 RAL-374 2092 chrX 14670308 14670335 chrX 14670391 14670397 6 91 3.0 1.0 2.0 2.0 89 chrX 14670308 intergenic not near genes chrX 14670352 intergenic not near genes chrX 14670397 intergenic not near genes chrX_6_14670001 chrX_14670001 RAL-374 2093 chrX 14716834 14716865 chrX 14717194 14717207 5 354 2.0 3.0 2.5 1.4 373 chrX 14716834 intron NetB - chrX 14717020 intron NetB - chrX 14717207 intron NetB - chrX_5_14715001 chrX_14715001 RAL-374 2094 chrX 14778018 14778043 chrX 14782835 14782860 Doc 6 4817 3.5 3.0 3.2 1.4 4842 chrX 14778018 intergenic CG5347 + chrX 14780439 intergenic not near genes chrX 14782860 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-374 2095 chrX 14818763 14818793 chrX 14823972 14824017 copia 4 5216 2.0 2.5 2.2 1.2 5254 chrX 14818763 intron rut - chrX 14821390 intron rut - chrX 14824017 intron rut - chrX_4_14820001 chrX_14820001 RAL-374 2096 chrX 14936846 14936882 chrX 14946115 14946159 roo 4 9275 1.0 3.0 2.0 1.3 9313 chrX 14936846 intron pdgy - chrX 14941502 intron pdgy - chrX 14946159 intron pdgy - chrX_4_14940001 chrX_14940001 RAL-374 2097 chrX 14981685 14981739 chrX 14981784 14981838 6 99 1.0 1.0 1.0 3.0 153 chrX 14981685 intron eag + chrX 14981762 intron eag + chrX 14981838 intron eag + chrX_6_14980001 chrX_14980001 RAL-374 2098 chrX 15248252 15248293 chrX 15248347 15248389 4 96 0.0 1.5 0.8 2.2 137 chrX 15248252 intergenic not near genes chrX 15248320 intergenic not near genes chrX 15248389 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-374 2099 chrX 15273692 15273732 chrX 15274873 15274912 1360 7 1174 3.0 1.0 2.0 2.3 1220 chrX 15273692 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274912 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-374 2100 chrX 15413056 15413069 chrX 15417362 15417390 Juan 6 4313 2.5 3.5 3.0 1.5 4334 chrX 15413056 intron Cngl - chrX 15415223 intron Cngl - chrX 15417390 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-374 2101 chrX 15435690 15435701 chrX 15436143 15436154 rover 4 452 0.0 8.5 4.2 0.8 464 chrX 15435690 intron Cngl - chrX 15435922 intron Cngl - chrX 15436154 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-374 2102 chrX 15543263 15543290 chrX 15543345 15543350 4 84 4.0 2.0 3.0 1.0 87 chrX 15543263 intron Ac13E - chrX 15543306 intron Ac13E - chrX 15543350 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-374 2103 chrX 15669875 15669885 chrX 15669984 15669994 4 109 1.0 1.0 1.0 2.0 119 chrX 15669875 intron CG15646 - chrX 15669934 intron CG15646 - chrX 15669994 intron CG15646 - chrX_4_15665001 chrX_15665001 RAL-374 2104 chrX 15678022 15678064 chrX 15678118 15678161 8 94 1.5 3.5 2.5 2.3 139 chrX 15678022 intergenic CG12708 + chrX 15678092 intergenic CG12708 + chrX 15678161 intergenic CG12708 + chrX_8_15675001 chrX_15675001 RAL-374 2105 chrX 15749646 15749684 chrX 15749769 15749807 11 123 0.5 2.0 1.2 5.0 161 chrX 15749646 intron CG8239 + chrX 15749726 intron CG8239 + chrX 15749807 intron CG8239 + chrX_11_15745001 chrX_15745001 RAL-374 2106 chrX 15818763 15818806 chrX 15818859 15818902 10 96 2.0 5.5 3.8 2.1 139 chrX 15818763 intron sd + chrX 15818832 intron sd + chrX 15818902 intron sd + chrX_10_15815001 chrX_15815001 RAL-374 2107 chrX 16105506 16105530 chrX 16105613 16105625 4 104 0.5 3.0 1.8 1.4 119 chrX 16105506 intergenic not near genes chrX 16105566 intergenic not near genes chrX 16105625 intergenic not near genes chrX_4_16105001 chrX_16105001 RAL-374 2108 chrX 16140116 16140168 chrX 16140219 16140269 6 102 3.5 3.0 3.2 1.4 153 chrX 16140116 intron disco-r - chrX 16140192 intron disco-r - chrX 16140269 intron disco-r - chrX_6_16140001 chrX_16140001 RAL-374 2109 chrX 16492627 16492675 chrX 16498224 16498272 mdg3 11 5597 2.5 4.0 3.2 2.6 5645 chrX 16492627 intron para - chrX 16495450 intron para - chrX 16498272 exon para - chrX_11_16495001 chrX_16495001 RAL-374 2110 chrX 16529432 16529442 chrX 16529537 16529573 6 124 0.0 3.5 1.8 2.1 141 chrX 16529432 intron para - chrX 16529502 intron para - chrX 16529573 intron para - chrX_6_16525001 chrX_16525001 RAL-374 2111 chrX 16554842 16554855 chrX 16554933 16554954 4 97 3.0 0.5 1.8 1.4 112 chrX 16554842 3` UTR Pp2B-14D - chrX 16554898 3` UTR Pp2B-14D - chrX 16554954 3` UTR Pp2B-14D - chrX_4_16550001 chrX_16550001 RAL-374 2112 chrX 16570863 16570882 chrX 16570963 16570980 4 100 2.5 1.5 2.0 1.3 117 chrX 16570863 intron CanA-14F - chrX 16570922 intron CanA-14F - chrX 16570980 intron CanA-14F - chrX_4_16570001 chrX_16570001 RAL-374 2113 chrX 16749876 16749924 chrX 16750648 16750693 10 770 1.0 3.0 2.0 3.3 817 chrX 16749876 intron CG9634 - chrX 16750284 intron CG9634 - chrX 16750693 intron CG9634 - chrX_10_16750001 chrX_16750001 RAL-374 2114 chrX 16785288 16785299 chrX 16785412 16785422 4 124 1.5 7.0 4.2 0.8 134 chrX 16785288 3` UTR CG9609 - chrX 16785355 3` UTR CG9609 - chrX 16785422 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-374 2115 chrX 16833189 16833236 chrX 16833293 16833298 9 98 3.0 2.5 2.8 2.4 109 chrX 16833189 intron CG13004 - chrX 16833244 intron CG13004 - chrX 16833298 intron CG13004 - chrX_9_16830001 chrX_16830001 RAL-374 2116 chrX 16983076 16983076 chrX 19404963 19404964 4 2421887 11.5 7.5 9.5 0.4 2421888 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-374 2117 chrX 17011948 17011992 chrX 17012051 17012063 5 92 2.0 2.0 2.0 1.7 115 chrX 17011948 intron CG45002 - chrX 17012006 intron CG45002 - chrX 17012063 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-374 2118 chrX 17089585 17089632 chrX 17089731 17089778 9 145 1.0 2.5 1.8 3.2 193 chrX 17089585 intergenic not near genes chrX 17089682 intergenic not near genes chrX 17089778 intergenic not near genes chrX_9_17085001 chrX_17085001 RAL-374 2119 chrX 17195185 17195230 chrX 17200291 17200335 flea 11 5106 2.5 2.5 2.5 3.1 5150 chrX 17195185 3` UTR baz + chrX 17197760 3` UTR baz + chrX 17200335 3` UTR baz + chrX_11_17195001 chrX_17195001 RAL-374 2120 chrX 17205829 17205843 chrX 17205938 17205953 6 109 2.0 4.0 3.0 1.5 124 chrX 17205829 intergenic not near genes chrX 17205891 intergenic not near genes chrX 17205953 intergenic CG32564 + chrX_6_17205001 chrX_17205001 RAL-374 2121 chrX 17237512 17237532 chrX 17237616 17237626 4 100 0.5 1.5 1.0 2.0 114 chrX 17237512 intron f + chrX 17237569 intron f + chrX 17237626 intron f + chrX_4_17235001 chrX_17235001 RAL-374 2122 chrX 17316348 17316382 chrX 17316452 17316485 4 104 1.0 0.0 0.5 2.7 137 chrX 17316348 intron B-H2 + chrX 17316416 intron B-H2 + chrX 17316485 intron B-H2 + chrX_4_17315001 chrX_17315001 RAL-374 2123 chrX 17389625 17389663 chrX 17389734 17389772 8 108 2.0 3.0 2.5 2.3 147 chrX 17389625 intergenic not near genes chrX 17389698 intergenic not near genes chrX 17389772 intergenic not near genes chrX_8_17385001 chrX_17385001 RAL-374 2124 chrX 17502339 17502371 chrX 17502438 17502471 4 99 3.0 3.5 3.2 1.0 132 chrX 17502339 intron CG43658 - chrX 17502405 intron CG43658 - chrX 17502471 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-374 2125 chrX 17544983 17545033 chrX 17545085 17545133 7 100 5.0 1.5 3.2 1.7 150 chrX 17544983 intron CG43658 - chrX 17545058 intron CG43658 - chrX 17545133 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-374 2126 chrX 17561397 17561449 chrX 17561496 17561513 8 94 1.5 1.0 1.2 3.6 116 chrX 17561397 intergenic CG43658 - chrX 17561455 intergenic CG43658 - chrX 17561513 intergenic CG43658 - chrX_8_17560001 chrX_17560001 RAL-374 2127 chrX 17680876 17680923 chrX 17680973 17681019 10 96 1.5 2.5 2.0 3.3 143 chrX 17680876 intron chas - chrX 17680948 intron chas - chrX 17681019 intron chas - chrX_10_17680001 chrX_17680001 RAL-374 2128 chrX 17708817 17708858 chrX 17708914 17708957 5 98 1.5 5.5 3.5 1.1 140 chrX 17708817 intron CG8173 - chrX 17708887 intron CG8173 - chrX 17708957 intron CG8173 - chrX_5_17705001 chrX_17705001 RAL-374 2129 chrX 17741317 17741368 chrX 17741483 17741534 4 166 0.0 2.5 1.2 1.8 217 chrX 17741317 intron CG42684 + chrX 17741426 intron CG42684 + chrX 17741534 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-374 2130 chrX 17782569 17782593 chrX 17782658 17782702 7 93 1.5 1.5 1.5 2.8 133 chrX 17782569 intergenic not near genes chrX 17782636 intergenic not near genes chrX 17782702 intergenic not near genes chrX_7_17780001 chrX_17780001 RAL-374 2131 chrX 17911833 17911870 chrX 17911941 17911978 6 108 1.0 0.5 0.8 3.3 145 chrX 17911833 intron CG6847 + chrX 17911906 intron CG6847 + chrX 17911978 intron CG6847 + chrX_6_17910001 chrX_17910001 RAL-374 2132 chrX 18040414 18040443 chrX 18040521 18040551 6 107 1.0 3.0 2.0 2.0 137 chrX 18040414 intron Sh - chrX 18040482 intron Sh - chrX 18040551 intron Sh - chrX_6_18040001 chrX_18040001 RAL-374 2133 chrX 18050991 18051031 chrX 18051091 18051131 4 99 5.5 4.0 4.8 0.7 140 chrX 18050991 intron Sh - chrX 18051061 intron Sh - chrX 18051131 intron Sh - chrX_4_18050001 chrX_18050001 RAL-374 2134 chrX 18126611 18126830 chrX 18126753 18126926 10 119 2.0 4.0 3.0 2.5 315 chrX 18126611 intron CG32553 - chrX 18126768 intron CG32553 - chrX 18126926 intron CG32553 - chrX_10_18125001 chrX_18125001 RAL-374 2135 chrX 18194053 18194095 chrX 18194608 18194650 BS 5 554 2.5 3.0 2.8 1.3 597 chrX 18194053 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194650 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-374 2136 chrX 18218045 18218060 chrX 18218181 18218197 4 136 2.0 5.5 3.8 0.8 152 chrX 18218045 intron CG33639 - chrX 18218121 intron CG33639 - chrX 18218197 intron CG33639 - chrX_4_18215001 chrX_18215001 RAL-374 2137 chrX 18413051 18413074 chrX 18413200 18413224 4 150 5.5 1.5 3.5 0.9 173 chrX 18413051 intergenic not near genes chrX 18413138 intergenic not near genes chrX 18413224 intergenic not near genes chrX_4_18410001 chrX_18410001 RAL-374 2138 chrX 18429475 18429515 chrX 18434806 18434845 Transpac 8 5330 4.0 1.0 2.5 2.3 5370 chrX 18429475 intergenic not near genes chrX 18432160 intergenic not near genes chrX 18434845 intergenic not near genes chrX_8_18430001 chrX_18430001 RAL-374 2139 chrX 18486103 18486133 chrX 18486212 18486242 9 107 3.0 1.5 2.2 2.8 139 chrX 18486103 exon psh - chrX 18486172 intron psh - chrX 18486242 intron psh - chrX_9_18485001 chrX_18485001 RAL-374 2140 chrX 18645012 18645044 chrX 18645117 18645162 8 116 2.5 2.5 2.5 2.3 150 chrX 18645012 intron Rip11 - chrX 18645087 intron Rip11 - chrX 18645162 intron Rip11 - chrX_8_18645001 chrX_18645001 RAL-374 2141 chrX 18698840 18698855 chrX 18698977 18698992 9 137 4.5 4.0 4.2 1.7 152 chrX 18698840 intergenic not near genes chrX 18698916 intergenic not near genes chrX 18698992 intergenic not near genes chrX_9_18695001 chrX_18695001 RAL-374 2142 chrX 18726930 18726975 chrX 18728394 18728438 8 1462 3.5 3.0 3.2 1.9 1508 chrX 18726930 intergenic CCKLR-17D1 - chrX 18727684 intergenic not near genes chrX 18728438 intergenic not near genes chrX_8_18725001 chrX_18725001 RAL-374 2143 chrX 18749603 18749648 chrX 18749703 18749738 5 99 2.0 0.5 1.2 2.3 135 chrX 18749603 intergenic not near genes chrX 18749670 intergenic not near genes chrX 18749738 intergenic not near genes chrX_5_18745001 chrX_18745001 RAL-374 2144 chrX 18774430 18774450 chrX 18774533 18774555 6 105 3.5 2.0 2.8 1.6 125 chrX 18774430 intergenic CCKLR-17D3 - chrX 18774492 intergenic CCKLR-17D3 - chrX 18774555 intergenic not near genes chrX_6_18770001 chrX_18770001 RAL-374 2145 chrX 18896507 18896542 chrX 18896637 18896673 8 130 2.5 5.5 4.0 1.6 166 chrX 18896507 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896673 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-374 2146 chrX 18988282 18988550 chrX 18988459 18988659 8 126 0.0 0.0 0.0 8.0 377 chrX 18988282 intron CG43759 + chrX 18988470 intron CG43759 + chrX 18988659 intron CG43759 + chrX_8_18985001 chrX_18985001 RAL-374 2147 chrX 19060393 19060434 chrX 19065197 19065238 Doc 8 4804 1.0 3.0 2.0 2.7 4845 chrX 19060393 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065238 intron CG14190 + chrX_8_19060001 chrX_19060001 RAL-374 2148 chrX 19097509 19097532 chrX 19097606 19097610 4 91 4.5 3.0 3.8 0.8 101 chrX 19097509 intergenic not near genes chrX 19097560 intergenic not near genes chrX 19097610 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-374 2149 chrX 19125696 19125717 chrX 19125842 19125866 6 148 4.5 4.5 4.5 1.1 170 chrX 19125696 intron tgy - chrX 19125781 intron tgy - chrX 19125866 intron tgy - chrX_6_19125001 chrX_19125001 RAL-374 2150 chrX 19147626 19147660 chrX 19147816 19147852 10 190 1.0 1.0 1.0 5.0 226 chrX 19147626 intron RhoGAP18B - chrX 19147739 intron RhoGAP18B - chrX 19147852 intron RhoGAP18B - chrX_10_19145001 chrX_19145001 RAL-374 2151 chrX 19176189 19176237 chrX 19176293 19176326 7 101 2.5 2.5 2.5 2.0 137 chrX 19176189 3` UTR CG7556 - chrX 19176258 3` UTR CG7556 - chrX 19176326 3` UTR CG7556 - chrX_7_19175001 chrX_19175001 RAL-374 2152 chrX 19182016 19182047 chrX 19182147 19182177 5 131 0.0 2.0 1.0 2.5 161 chrX 19182016 3` UTR CG7453 + chrX 19182096 intergenic CG7453 + chrX 19182177 intergenic CG7453 + chrX_5_19180001 chrX_19180001 RAL-374 2153 chrX 19240198 19240241 chrX 19240304 19240324 6 99 2.5 2.5 2.5 1.7 126 chrX 19240198 intron CG14196 - chrX 19240261 intron CG14196 - chrX 19240324 intron CG14196 - chrX_6_19240001 chrX_19240001 RAL-374 2154 chrX 19256633 19256672 chrX 19256732 19256771 12 99 3.5 4.5 4.0 2.4 138 chrX 19256633 intron rictor - chrX 19256702 intron rictor - chrX 19256771 intron rictor - chrX_12_19255001 chrX_19255001 RAL-374 2155 chrX 19310604 19310643 chrX 19310890 19310929 5 286 0.0 1.5 0.8 2.8 325 chrX 19310604 3` UTR out - chrX 19310766 3` UTR out - chrX 19310929 3` UTR out - chrX_5_19310001 chrX_19310001 RAL-374 2156 chrX 19352459 19352504 chrX 19370486 19370530 5 18026 12.5 2.0 7.2 0.6 18071 chrX 19352459 intergenic not near genes chrX 19361494 intron kek5 + chrX 19370530 intron kek5 + chrX_5_19360001 chrX_19360001 RAL-374 2157 chrX 19356969 19357000 chrX 19358430 19358457 NOF 6 1460 5.0 0.5 2.8 1.6 1488 chrX 19356969 intron kek5 + chrX 19357713 intron kek5 + chrX 19358457 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-374 2158 chrX 19380149 19380179 chrX 19380402 19380440 pogo 8 258 4.0 4.0 4.0 1.6 291 chrX 19380149 intron kek5 + chrX 19380294 intron kek5 + chrX 19380440 intron kek5 + chrX_8_19380001 chrX_19380001 RAL-374 2159 chrX 19472103 19472159 chrX 19472693 19472697 jockey 13 580 1.0 5.0 3.0 3.2 594 chrX 19472103 intergenic kek5 + chrX 19472400 intergenic kek5 + chrX 19472697 intergenic not near genes chrX_13_19470001 chrX_19470001 RAL-374 2160 chrX 19500723 19500739 chrX 19500830 19500846 4 107 0.5 3.5 2.0 1.3 123 chrX 19500723 intron,intron CG14200 +,Pfrx + chrX 19500784 intron,intron CG14200 +,Pfrx + chrX 19500846 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-374 2161 chrX 19710057 19710104 chrX 19711858 19711910 S-element 10 1802 0.5 3.0 1.8 3.6 1853 chrX 19710057 intron meso18E - chrX 19710984 intron meso18E - chrX 19711910 intron meso18E - chrX_10_19710001 chrX_19710001 RAL-374 2162 chrX 19881434 19881484 chrX 19881535 19881583 5 97 3.5 1.0 2.2 1.6 149 chrX 19881434 intron Hers + chrX 19881508 intron Hers + chrX 19881583 intron Hers + chrX_5_19880001 chrX_19880001 RAL-374 2163 chrX 20041513 20041563 chrX 20041613 20041663 11 99 2.5 1.5 2.0 3.7 150 chrX 20041513 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041663 intron Dop2R - chrX_11_20040001 chrX_20040001 RAL-374 2164 chrX 20065787 20065832 chrX 20065886 20065931 6 95 1.5 3.0 2.2 1.9 144 chrX 20065787 intergenic not near genes chrX 20065859 intergenic not near genes chrX 20065931 intergenic not near genes chrX_6_20065001 chrX_20065001 RAL-374 2165 chrX 20125376 20125393 chrX 20125478 20125495 4 102 0.0 0.0 0.0 4.0 119 chrX 20125376 intergenic CG34331 + chrX 20125436 intergenic CG34331 + chrX 20125495 intergenic CG34331 + chrX_4_20125001 chrX_20125001 RAL-374 2166 chrX 20165992 20166033 chrX 20166093 20166133 9 99 3.5 1.5 2.5 2.6 141 chrX 20165992 intergenic Phf7 - chrX 20166062 intergenic Phf7 - chrX 20166133 intergenic Phf7 - chrX_9_20165001 chrX_20165001 RAL-374 2167 chrX 20262868 20262917 chrX 20262997 20263047 5 129 0.0 2.0 1.0 2.5 179 chrX 20262868 intergenic not near genes chrX 20262958 intergenic not near genes chrX 20263047 intergenic not near genes chrX_5_20260001 chrX_20260001 RAL-374 2168 chrX 20271483 20271519 chrX 20271595 20271635 5 112 1.0 0.0 0.5 3.3 152 chrX 20271483 intergenic not near genes chrX 20271559 intergenic not near genes chrX 20271635 intergenic not near genes chrX_5_20270001 chrX_20270001 RAL-374 2169 chrX 20312869 20312908 chrX 20312967 20313006 9 97 0.5 3.5 2.0 3.0 137 chrX 20312869 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20313006 intron CG1504 - chrX_9_20310001 chrX_20310001 RAL-374 2170 chrX 20369301 20369343 chrX 20369405 20369447 8 103 1.5 1.5 1.5 3.2 146 chrX 20369301 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369447 intergenic not near genes chrX_8_20365001 chrX_20365001 RAL-374 2171 chrX 20373218 20373258 chrX 20373745 20373798 6 533 1.5 2.0 1.8 2.1 580 chrX 20373218 intergenic not near genes chrX 20373508 intergenic not near genes chrX 20373798 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-374 2172 chrX 20377327 20377346 chrX 20378784 20378805 hobo 8 1472 3.5 2.0 2.8 2.1 1478 chrX 20377327 intergenic not near genes chrX 20378066 intergenic not near genes chrX 20378805 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-374 2173 chrX 20383770 20383820 chrX 20383891 20383941 10 118 1.0 1.5 1.2 4.5 171 chrX 20383770 intergenic not near genes chrX 20383856 intergenic not near genes chrX 20383941 intergenic not near genes chrX_10_20380001 chrX_20380001 RAL-374 2174 chrX 20384251 20384279 chrX 20384354 20384366 4 99 2.5 1.5 2.0 1.3 115 chrX 20384251 intergenic not near genes chrX 20384308 intergenic not near genes chrX 20384366 intergenic not near genes chrX_4_20380001 chrX_20380001 RAL-374 2175 chrX 20484742 20484778 chrX 20484977 20485013 8 231 2.0 2.0 2.0 2.7 271 chrX 20484742 intron RhoGAP19D - chrX 20484878 intron RhoGAP19D - chrX 20485013 intron RhoGAP19D - chrX_8_20480001 chrX_20480001 RAL-374 2176 chrX 20528588 20528630 chrX 20528956 20528998 5 368 4.0 3.5 3.8 1.0 410 chrX 20528588 intergenic not near genes chrX 20528793 intergenic not near genes chrX 20528998 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-374 2177 chrX 20559119 20559133 chrX 20559217 20559231 4 98 0.0 1.0 0.5 2.7 112 chrX 20559119 intron RunxB + chrX 20559175 intron RunxB + chrX 20559231 intron RunxB + chrX_4_20555001 chrX_20555001 RAL-374 2178 chrX 20575148 20575182 chrX 20575246 20575280 5 95 2.0 2.0 2.0 1.7 132 chrX 20575148 intergenic CG42580 + chrX 20575214 intergenic not near genes chrX 20575280 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-374 2179 chrX 20635420 20635437 chrX 20635606 20635623 4 186 1.5 4.5 3.0 1.0 203 chrX 20635420 intergenic not near genes chrX 20635522 intergenic not near genes chrX 20635623 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-374 2180 chrX 20710420 20710435 chrX 20710517 20710532 4 97 0.5 0.5 0.5 2.7 112 chrX 20710420 intergenic not near genes chrX 20710476 intergenic not near genes chrX 20710532 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-374 2181 chrX 20836719 20836740 chrX 20844341 20844347 roo 4 7618 0.5 5.0 2.8 1.1 7628 chrX 20836719 intron shakB - chrX 20840533 intron shakB - chrX 20844347 intron shakB - chrX_4_20840001 chrX_20840001 RAL-374 2182 chrX 20940703 20940750 chrX 20942192 20942229 hobo 7 1487 3.0 2.5 2.8 1.8 1526 chrX 20940703 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942229 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-374 2183 chrX 21022213 21022240 chrX 21022402 21022410 7 184 1.0 0.5 0.8 3.9 197 chrX 21022213 intergenic not near genes chrX 21022312 intergenic not near genes chrX 21022410 intergenic not near genes chrX_7_21020001 chrX_21020001 RAL-374 2184 chrX 21076320 21076352 chrX 21076419 21076451 5 99 3.5 0.5 2.0 1.7 131 chrX 21076320 intron bves + chrX 21076386 intron bves + chrX 21076451 intron bves + chrX_5_21075001 chrX_21075001 RAL-374 2185 chrX 21086123 21086162 chrX 21087157 21087196 jockey 12 1045 4.0 4.0 4.0 2.4 1073 chrX 21086123 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087196 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-374 2186 chrX 21197041 21197084 chrX 21197139 21197180 11 97 1.5 0.0 0.8 6.1 139 chrX 21197041 intergenic not near genes chrX 21197110 intergenic not near genes chrX 21197180 intergenic not near genes chrX_11_21195001 chrX_21195001 RAL-374 2187 chrX 21358054 21358082 chrX 21358154 21358182 6 100 3.0 2.0 2.5 1.7 128 chrX 21358054 intergenic sol +,Sep1 + chrX 21358118 intergenic Sep1 +,sol + chrX 21358182 intergenic Sep1 +,sol + chrX_6_21355001 chrX_21355001 RAL-374 2188 chrX 21387909 21387931 chrX 21388020 21388044 4 112 3.0 2.5 2.8 1.1 135 chrX 21387909 5` UTR Hlc - chrX 21387976 intergenic Hlc - chrX 21388044 intergenic Hlc - chrX_4_21385001 chrX_21385001 RAL-374 2189 chrX 21410632 21410666 chrX 21410731 21410763 4 98 0.0 1.5 0.8 2.2 131 chrX 21410632 intergenic CR45003 - chrX 21410698 intergenic CR45003 - chrX 21410763 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-374 2190 chrX 21429990 21430028 chrX 21430088 21430126 5 98 1.0 1.5 1.2 2.3 136 chrX 21429990 intron CG42343 - chrX 21430058 intron CG42343 - chrX 21430126 intron CG42343 - chrX_5_21430001 chrX_21430001 RAL-374 2191 chrX 21455203 21455240 chrX 21455401 21455447 7 204 0.5 0.0 0.2 5.8 244 chrX 21455203 intron CG42343 - chrX 21455325 intron CG42343 - chrX 21455447 intron CG42343 - chrX_7_21455001 chrX_21455001 RAL-374 2192 chrX 21458681 21458724 chrX 21464137 21464178 Ivk 12 5455 2.0 3.5 2.8 3.2 5497 chrX 21458681 intergenic not near genes chrX 21461430 intergenic not near genes chrX 21464178 intergenic not near genes chrX_12_21460001 chrX_21460001 RAL-374 2193 chrX 21500546 21500570 chrX 21500767 21500791 5 219 0.0 1.0 0.5 3.3 245 chrX 21500546 intron CR45082 - chrX 21500668 intron CR45082 - chrX 21500791 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-374 2194 chrX 21565397 21565429 chrX 21565491 21565527 5 97 2.5 1.5 2.0 1.7 130 chrX 21565397 intergenic not near genes chrX 21565462 intergenic not near genes chrX 21565527 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-374 2195 chrX 21567938 21568050 chrX 21568037 21568146 6 95 0.0 0.0 0.0 6.0 208 chrX 21567938 intergenic not near genes chrX 21568042 intergenic not near genes chrX 21568146 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-374 2196 chrX 21668237 21668287 chrX 21668342 21668392 8 102 14.0 13.5 13.8 0.5 155 chrX 21668237 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668392 intergenic not near genes chrX_8_21665001 chrX_21665001 RAL-374 2197 chrX 22259784 22259791 chrX 22260224 22260228 rover 5 440 64.0 8.5 36.2 0.1 444 chrX 22259784 intergenic not near genes chrX 22260006 intergenic not near genes chrX 22260228 intergenic not near genes chrX_5_22260001 chrX_22260001 RAL-374 2198 chrX 22448260 22448291 chrX 22448419 22448450 9 159 3.0 1.5 2.2 2.8 190 chrX 22448260 intron CG14615 - chrX 22448355 intron CG14615 - chrX 22448450 intron CG14615 - chrX_9_22445001 chrX_22445001 RAL-374 2199 chrX 22478874 22478897 chrX 22479026 22479050 7 153 0.0 5.0 2.5 2.0 176 chrX 22478874 intron CG12576 - chrX 22478962 intron CG12576 - chrX 22479050 intron CG12576 - chrX_7_22475001 chrX_22475001 RAL-374 2200 chrX 22522618 22522649 chrX 22525458 22525478 NOF 10 2838 3.5 1.0 2.2 3.1 2860 chrX 22522618 intron CG17600 + chrX 22524048 intron CG17600 + chrX 22525478 intron CG17600 + chrX_10_22520001 chrX_22520001 RAL-374 2201 chrX 22564562 22564567 chrX 22575114 22575147 jockey 8 10556 9.5 4.5 7.0 1.0 10585 chrX 22564562 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575147 intergenic not near genes chrX_8_22565001 chrX_22565001 RAL-374 2202 chrX 22660551 22660560 chrX 22660654 22660664 4 104 4.0 0.0 2.0 1.3 113 chrX 22660551 intron CR44997 + chrX 22660608 intron CR44997 + chrX 22660664 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-374 2203 chrX 22697485 22697517 chrX 22701802 22701834 Juan 7 4317 4.0 1.5 2.8 1.8 4349 chrX 22697485 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701834 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-374 2204 chrX 22771500 22771539 chrX 22774808 22774850 297 7 3310 2.0 3.0 2.5 2.0 3350 chrX 22771500 intron CR44997 + chrX 22773175 intron CR44997 + chrX 22774850 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-374 2205 chrX 22824398 22824445 chrX 22824551 22824596 4 147 2.5 1.0 1.8 1.4 198 chrX 22824398 3` UTR fog - chrX 22824497 3` UTR fog - chrX 22824596 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-374 2206 chrX 22844521 22844527 chrX 22844627 22844634 4 106 3.5 2.5 3.0 1.0 113 chrX 22844521 intron,intron fog -,CG42346 + chrX 22844578 intron,intron fog -,CG42346 + chrX 22844634 intron,intron fog -,CG42346 + chrX_4_22840001 chrX_22840001 RAL-374 2207 chrX 22922503 22922534 chrX 22922603 22922634 6 97 2.0 3.5 2.8 1.6 131 chrX 22922503 intergenic not near genes chrX 22922568 intergenic not near genes chrX 22922634 intergenic not near genes chrX_6_22920001 chrX_22920001 RAL-374 2208 chrX 22996296 22996332 chrX 23003550 23003586 roo 6 7254 5.0 3.5 4.2 1.2 7290 chrX 22996296 intron,intron stnA -,stnB - chrX 22999941 intron,intron stnA -,stnB - chrX 23003586 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-374 2209 chrY 655946 655969 chrY 656142 656165 4 194 1.0 0.5 0.8 2.2 219 chrY 655946 intron kl-2 + chrY 656056 intron kl-2 + chrY 656165 exon kl-2 + chrY_4_655001 chrY_655001 RAL-374