SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47462	47489	chr2L	52566	52594	jockey	11	5105	2.0	6.0	4.0	2.2	5132	chr2L	47462	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52594	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-367
9	chr2L	686927	686949	chr2L	695966	695988	roo	5	9040	4.5	1.0	2.8	1.3	9061	chr2L	686927	intron	ds -	chr2L	691458	intron	ds -	chr2L	695988	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-367
10	chr2L	770467	770483	chr2L	772248	772264	Bari1	9	1781	3.5	1.5	2.5	2.6	1797	chr2L	770467	intergenic	not near genes	chr2L	771366	intergenic	not near genes	chr2L	772264	intergenic	CR44614 +	chr2L_9_770001	chr2L_770001	RAL-367
16	chr2L	976878	976908	chr2L	984514	984544	roo	5	7636	3.5	2.0	2.8	1.3	7666	chr2L	976878	intergenic	not near genes	chr2L	980711	intergenic	not near genes	chr2L	984544	intergenic	not near genes	chr2L_5_980001	chr2L_980001	RAL-367
21	chr2L	1220128	1220161	chr2L	1227594	1227627	blood	7	7464	3.5	3.5	3.5	1.6	7499	chr2L	1220128	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_7_1220001	chr2L_1220001	RAL-367
26	chr2L	1570687	1570722	chr2L	1573559	1573594	F-element	4	2872	2.5	2.0	2.2	1.2	2907	chr2L	1570687	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573594	intron	haf +	chr2L_4_1570001	chr2L_1570001	RAL-367
28	chr2L	1711360	1711389	chr2L	1711684	1711700	mdg3	8	320	2.0	3.5	2.8	2.1	340	chr2L	1711360	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711530	3` UTR	frtz -	chr2L	1711700	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-367
32	chr2L	2100389	2100403	chr2L	2109540	2109550	roo	5	9150	7.0	3.0	5.0	0.8	9161	chr2L	2100389	intron	dpr3 -	chr2L	2104970	intron	dpr3 -	chr2L	2109550	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-367
38	chr2L	2772611	2772630	chr2L	2779195	2779214	297	5	6584	1.5	2.0	1.8	1.8	6603	chr2L	2772611	3` UTR	Syt1 -	chr2L	2775912	intron	Syt1 -	chr2L	2779214	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-367
40	chr2L	2933314	2933332	chr2L	2935491	2935509	pogo	5	2177	3.0	4.5	3.8	1.0	2195	chr2L	2933314	intron	lilli +	chr2L	2934412	intron	lilli +	chr2L	2935509	intron	lilli +	chr2L_5_2930001	chr2L_2930001	RAL-367
41	chr2L	3073017	3073026	chr2L	3078239	3078249	copia	6	5223	2.5	2.0	2.2	1.9	5232	chr2L	3073017	intron	toc -	chr2L	3075633	intron	toc -	chr2L	3078249	intron	toc -	chr2L_6_3075001	chr2L_3075001	RAL-367
64	chr2L	4601705	4601737	chr2L	4609146	4609178	mdg1	9	7441	2.0	2.5	2.2	2.8	7473	chr2L	4601705	intron	dp -	chr2L	4605442	intron	dp -	chr2L	4609178	intron	dp -	chr2L_9_4605001	chr2L_4605001	RAL-367
68	chr2L	4953512	4953544	chr2L	4953753	4953785	pogo	8	241	2.5	1.0	1.8	2.9	273	chr2L	4953512	intergenic	Jon25Bii -	chr2L	4953648	intergenic	not near genes	chr2L	4953785	intergenic	Jon25Bi -	chr2L_8_4950001	chr2L_4950001	RAL-367
72	chr2L	5342777	5342798	chr2L	5345157	5345178	Doc	4	2380	2.5	1.5	2.0	1.3	2401	chr2L	5342777	intergenic	not near genes	chr2L	5343978	intergenic	not near genes	chr2L	5345178	intergenic	not near genes	chr2L_4_5340001	chr2L_5340001	RAL-367
76	chr2L	5827713	5827740	chr2L	5836721	5836748	roo	8	9008	5.5	1.5	3.5	1.8	9035	chr2L	5827713	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836748	intron	TrissinR +	chr2L_8_5830001	chr2L_5830001	RAL-367
86	chr2L	6363151	6363168	chr2L	6366077	6366094	Burdock	5	2926	1.5	3.5	2.5	1.4	2943	chr2L	6363151	intergenic	not near genes	chr2L	6364622	intergenic	not near genes	chr2L	6366094	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	RAL-367
87	chr2L	6426873	6426887	chr2L	6445133	6445147	roo	4	18260	3.0	4.0	3.5	0.9	18274	chr2L	6426873	3` UTR	CG9527 -	chr2L	6436010	intron	CG9527 -	chr2L	6445147	exon	CG9527 -	chr2L_4_6435001	chr2L_6435001	RAL-367
92	chr2L	6876785	6876810	chr2L	6882975	6883001	diver	4	6191	1.5	5.0	3.2	1.0	6216	chr2L	6876785	intron	Nlg2 +	chr2L	6879893	intron	Nlg2 +	chr2L	6883001	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-367
97	chr2L	7343324	7343358	chr2L	7350440	7350473	roo	10	7116	2.0	5.0	3.5	2.2	7149	chr2L	7343324	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350473	intron	Wnt6 +	chr2L_10_7345001	chr2L_7345001	RAL-367
105	chr2L	7959022	7959073	chr2L	7960455	7960484	pogo	6	1429	0.0	1.5	0.8	3.3	1462	chr2L	7959022	intron	Snoo -	chr2L	7959753	intron	Snoo -	chr2L	7960484	intron	Snoo -	chr2L_6_7955001	chr2L_7955001	RAL-367
106	chr2L	7977090	7977113	chr2L	7984066	7984089	297	5	6976	2.0	4.5	3.2	1.2	6999	chr2L	7977090	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984089	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-367
113	chr2L	8452423	8452449	chr2L	8461594	8461620	roo	4	9171	1.5	2.0	1.8	1.4	9197	chr2L	8452423	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461620	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-367
117	chr2L	8723119	8723135	chr2L	8731496	8731512	Tirant	4	8377	4.5	3.5	4.0	0.8	8393	chr2L	8723119	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731512	intron	raw -	chr2L_4_8725001	chr2L_8725001	RAL-367
120	chr2L	9000288	9000306	chr2L	9007798	9007816	roo	7	7510	3.5	5.0	4.2	1.3	7528	chr2L	9000288	intergenic	Try29F +	chr2L	9004052	intergenic	not near genes	chr2L	9007816	intergenic	not near genes	chr2L_7_9000001	chr2L_9000001	RAL-367
137	chr2L	9973730	9973756	chr2L	9980849	9980855	HMS-Beagle	9	7117	5.0	4.0	4.5	1.6	7125	chr2L	9973730	intergenic	not near genes	chr2L	9977292	intergenic	not near genes	chr2L	9980855	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	RAL-367
142	chr2L	10156330	10156346	chr2L	10163800	10163816	blood	8	7470	3.0	4.0	3.5	1.8	7486	chr2L	10156330	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160073	intron	CG44153 -	chr2L	10163816	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-367
154	chr2L	10862841	10862867	chr2L	10864454	10864466	Rt1c	8	1610	2.5	1.0	1.8	2.9	1625	chr2L	10862841	3` UTR	CR43807 -	chr2L	10863654	intron	CR43807 -	chr2L	10864466	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	RAL-367
155	chr2L	10862869	10862880	chr2L	10864450	10864470	Rt1c	4	1595	2.5	1.0	1.8	1.4	1601	chr2L	10862869	3` UTR	CR43807 -	chr2L	10863670	intron	CR43807 -	chr2L	10864470	3` UTR	CR43807 -	chr2L_4_10860001	chr2L_10860001	RAL-367
157	chr2L	10946961	10946973	chr2L	10956176	10956188	roo	5	9215	2.5	6.5	4.5	0.9	9227	chr2L	10946961	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956188	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	RAL-367
164	chr2L	11563644	11563669	chr2L	11568848	11568873	copia	7	5204	3.5	3.0	3.2	1.7	5229	chr2L	11563644	intergenic	not near genes	chr2L	11566258	intergenic	not near genes	chr2L	11568873	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	RAL-367
167	chr2L	11713508	11713538	chr2L	11720975	11721006	blood	7	7468	2.0	2.0	2.0	2.3	7498	chr2L	11713508	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-367
176	chr2L	12558324	12558353	chr2L	12565453	12565482	HMS-Beagle	5	7129	1.5	2.0	1.8	1.8	7158	chr2L	12558324	intergenic	not near genes	chr2L	12561903	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-367
177	chr2L	12728935	12728945	chr2L	12729178	12729188	pogo	4	243	2.0	5.0	3.5	0.9	253	chr2L	12728935	intron	MRP +	chr2L	12729062	intron	MRP +	chr2L	12729188	exon	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-367
178	chr2L	12731056	12731088	chr2L	12735823	12735855	F-element	5	4767	2.5	2.0	2.2	1.6	4799	chr2L	12731056	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735855	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-367
179	chr2L	12739174	12739205	chr2L	12743955	12743986	Doc	6	4781	2.5	3.0	2.8	1.6	4812	chr2L	12739174	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743986	exon	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-367
181	chr2L	12781796	12781807	chr2L	12789246	12789257	Quasimodo	5	7450	6.0	4.5	5.2	0.8	7461	chr2L	12781796	intergenic	not near genes	chr2L	12785526	intergenic	not near genes	chr2L	12789257	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-367
182	chr2L	12791614	12791628	chr2L	12795289	12795302	F-element	4	3674	1.0	3.0	2.0	1.3	3688	chr2L	12791614	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795302	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-367
183	chr2L	12861696	12861729	chr2L	12863163	12863196	hobo	7	1467	2.0	2.5	2.2	2.2	1500	chr2L	12861696	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_7_12860001	chr2L_12860001	RAL-367
184	chr2L	12894023	12894053	chr2L	12895490	12895520	hobo	7	1467	1.5	2.5	2.0	2.3	1497	chr2L	12894023	intergenic	not near genes	chr2L	12894772	intergenic	not near genes	chr2L	12895520	intergenic	not near genes	chr2L_7_12890001	chr2L_12890001	RAL-367
192	chr2L	13405649	13405679	chr2L	13410446	13410474	Doc	8	4797	3.0	4.0	3.5	1.8	4825	chr2L	13405649	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RAL-367
193	chr2L	13449461	13449496	chr2L	13456897	13456932	Quasimodo	4	7436	1.0	2.0	1.5	1.6	7471	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	RAL-367
194	chr2L	13481450	13481475	chr2L	13482057	13482082	jockey	4	607	2.0	4.0	3.0	1.0	632	chr2L	13481450	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482082	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-367
195	chr2L	13761803	13761827	chr2L	13762914	13762938	Doc	9	1111	5.0	2.0	3.5	2.0	1135	chr2L	13761803	intron	TM9SF4 +	chr2L	13762370	intron	TM9SF4 +	chr2L	13762938	intron	TM9SF4 +	chr2L_9_13760001	chr2L_13760001	RAL-367
197	chr2L	13853086	13853116	chr2L	13862236	13862266	roo	6	9150	3.0	1.0	2.0	2.0	9180	chr2L	13853086	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_6_13855001	chr2L_13855001	RAL-367
214	chr2L	14803879	14803911	chr2L	14809082	14809114	copia	10	5201	3.0	4.0	3.5	2.2	5235	chr2L	14803879	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809114	intergenic	not near genes	chr2L_10_14805001	chr2L_14805001	RAL-367
221	chr2L	15586409	15586438	chr2L	15593461	15593490	297	5	7052	2.0	1.5	1.8	1.8	7081	chr2L	15586409	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593490	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-367
224	chr2L	15956028	15956053	chr2L	15957495	15957495	hobo	5	1462	4.0	4.0	4.0	1.0	1467	chr2L	15956028	intron	beat-Ib -	chr2L	15956762	intron	beat-Ib -	chr2L	15957495	intron	beat-Ib -	chr2L_5_15955001	chr2L_15955001	RAL-367
227	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	17.0	17.0	17.0	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-367
229	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	17.0	17.0	17.0	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-367
231	chr2L	16280255	16280278	chr2L	16281426	16281448	1360	7	1170	4.5	6.0	5.2	1.1	1193	chr2L	16280255	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281448	intron	crp -	chr2L_7_16280001	chr2L_16280001	RAL-367
235	chr2L	16511965	16511996	chr2L	16519079	16519110	HMS-Beagle	4	7114	0.5	1.5	1.0	2.0	7145	chr2L	16511965	intron	CG5953 -	chr2L	16515538	intron	CG5953 -	chr2L	16519110	intron	CG5953 -	chr2L_4_16515001	chr2L_16515001	RAL-367
243	chr2L	17199158	17199183	chr2L	17200625	17200650	hobo	5	1467	5.0	2.0	3.5	1.1	1492	chr2L	17199158	intron	beat-IIIc -	chr2L	17199904	intron	beat-IIIc -	chr2L	17200650	intron	beat-IIIc -	chr2L_5_17195001	chr2L_17195001	RAL-367
245	chr2L	17273195	17273225	chr2L	17277978	17277997	F-element	7	4781	4.0	5.0	4.5	1.3	4802	chr2L	17273195	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17277997	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-367
251	chr2L	17727767	17727789	chr2L	17729456	17729478	hobo	4	1689	3.5	2.0	2.8	1.1	1711	chr2L	17727767	intron	CadN -	chr2L	17728622	intron	CadN -	chr2L	17729478	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-367
253	chr2L	17911964	17911987	chr2L	17914142	17914165	pogo	9	2178	5.0	2.5	3.8	1.9	2201	chr2L	17911964	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914165	intergenic	CG43271 -	chr2L_9_17910001	chr2L_17910001	RAL-367
258	chr2L	18051875	18051881	chr2L	18061022	18061028	roo	4	9147	7.0	1.5	4.2	0.8	9153	chr2L	18051875	intron	rdo +	chr2L	18056452	intron	rdo +	chr2L	18061028	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-367
262	chr2L	18408024	18408045	chr2L	18412808	18412829	Doc	8	4784	1.5	0.0	0.8	4.4	4805	chr2L	18408024	intergenic	not near genes	chr2L	18410426	intergenic	not near genes	chr2L	18412829	intergenic	not near genes	chr2L_8_18410001	chr2L_18410001	RAL-367
271	chr2L	19147369	19147397	chr2L	19154404	19154432	297	4	7035	4.0	2.5	3.2	1.0	7063	chr2L	19147369	intron	brat +	chr2L	19150900	intron	brat +	chr2L	19154432	intron	brat +	chr2L_4_19150001	chr2L_19150001	RAL-367
273	chr2L	19345016	19345044	chr2L	19357225	19357253	blood	9	12209	2.5	4.0	3.2	2.1	12237	chr2L	19345016	intron	dnt -	chr2L	19351134	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_9_19350001	chr2L_19350001	RAL-367
282	chr2L	19620093	19620119	chr2L	19621082	19621089	jockey	6	984	4.5	3.5	4.0	1.2	996	chr2L	19620093	intron	Lar +	chr2L	19620591	intron	Lar +	chr2L	19621089	intron	Lar +	chr2L_6_19620001	chr2L_19620001	RAL-367
284	chr2L	19652569	19652599	chr2L	19674005	19674030	opus	5	21435	1.0	1.5	1.2	2.3	21461	chr2L	19652569	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674030	intron	Lar +	chr2L_5_19660001	chr2L_19660001	RAL-367
286	chr2L	19703537	19703569	chr2L	19712673	19712705	roo	13	9135	3.5	1.5	2.5	3.7	9168	chr2L	19703537	intron	Lar +	chr2L	19708121	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_13_19705001	chr2L_19705001	RAL-367
289	chr2L	20272114	20272137	chr2L	20282825	20282848	copia	4	10711	0.5	2.0	1.2	1.8	10734	chr2L	20272114	intergenic	not near genes	chr2L	20277481	intergenic	not near genes	chr2L	20282848	intergenic	not near genes	chr2L_4_20275001	chr2L_20275001	RAL-367
297	chr2L	20568665	20568686	chr2L	20569055	20569076	X-element	4	390	0.5	2.0	1.2	1.8	411	chr2L	20568665	intron	CR45347 +	chr2L	20568870	intron	CR45347 +	chr2L	20569076	intron	CR45347 +	chr2L_4_20565001	chr2L_20565001	RAL-367
298	chr2L	20576218	20576249	chr2L	20583686	20583717	blood	9	7468	6.5	0.5	3.5	2.0	7499	chr2L	20576218	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583717	3` UTR	CR44909 -	chr2L_9_20575001	chr2L_20575001	RAL-367
300	chr2L	20639517	20639525	chr2L	20639793	20639801	INE-1	5	276	2.5	4.0	3.2	1.2	284	chr2L	20639517	intergenic	not near genes	chr2L	20639659	intergenic	CG31680 +	chr2L	20639801	intergenic	CG31680 +	chr2L_5_20635001	chr2L_20635001	RAL-367
303	chr2L	20739864	20739885	chr2L	20753996	20754017	Tirant	10	14133	27.0	21.0	24.0	0.4	14153	chr2L	20739864	3` UTR	Fs(2)Ket +	chr2L	20746940	intron	Fs(2)Ket +	chr2L	20754017	exon	Ns4 +	chr2L_10_20745001	chr2L_20745001	RAL-367
311	chr2L	20891539	20891546	chr2L	20896640	20896647	jockey	4	5101	1.5	4.0	2.8	1.1	5108	chr2L	20891539	intron,intron	CG43739 -,sky -	chr2L	20894093	intron,intron	CG43739 -,sky -	chr2L	20896647	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	RAL-367
312	chr2L	20901471	20901489	chr2L	20902635	20902653	1360	4	1164	0.0	0.5	0.2	3.3	1182	chr2L	20901471	intron,intron	CG43739 -,sky -	chr2L	20902062	intron,intron	CG43739 -,sky -	chr2L	20902653	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-367
315	chr2L	21020277	21020311	chr2L	21023954	21023988	NOF	9	3677	3.0	2.5	2.8	2.4	3711	chr2L	21020277	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023988	intron	CG42238 -	chr2L_9_21020001	chr2L_21020001	RAL-367
316	chr2L	21041135	21041166	chr2L	21049396	21049426	Tirant	8	8260	2.0	3.0	2.5	2.3	8291	chr2L	21041135	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049426	intron	CG42238 -	chr2L_8_21045001	chr2L_21045001	RAL-367
328	chr2L	21981689	21981710	chr2L	21990854	21990871	roo	6	9163	2.5	6.5	4.5	1.1	9182	chr2L	21981689	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990871	exon	CG2528 -	chr2L_6_21985001	chr2L_21985001	RAL-367
332	chr2L	22719434	22719449	chr2L	22727557	22727572	gypsy2	6	8123	4.0	0.0	2.0	2.0	8138	chr2L	22719434	intron	CG40006 -	chr2L	22723503	intron	CG40006 -	chr2L	22727572	intron	CG40006 -	chr2L_6_22720001	chr2L_22720001	RAL-367
334	chr2L	23006509	23006532	chr2L	23007183	23007199	Osvaldo	10	674	1.5	3.5	2.5	2.9	690	chr2L	23006509	intron	Cht3 -	chr2L	23006854	intron	Cht3 -	chr2L	23007199	intron	Cht3 -	chr2L_10_23005001	chr2L_23005001	RAL-367
335	chr2R	3144092	3144110	chr2R	3393370	3393388	Doc	5	249276	10.5	9.5	10.0	0.5	249296	chr2R	3144092	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393388	intergenic	not near genes	chr2R_5_3265001	chr2R_3265001	RAL-367
339	chr2R	4622950	4622988	chr2R	4624109	4624147	1360	12	1159	5.0	1.0	3.0	3.0	1197	chr2R	4622950	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_12_4620001	chr2R_4620001	RAL-367
357	chr2R	5869275	5869297	chr2R	5874351	5874364	flea	6	5074	2.5	1.5	2.0	2.0	5089	chr2R	5869275	intergenic	not near genes	chr2R	5871820	intergenic	not near genes	chr2R	5874364	intergenic	not near genes	chr2R_6_5870001	chr2R_5870001	RAL-367
360	chr2R	6096717	6096744	chr2R	6101915	6101923	BS	7	5193	4.5	2.0	3.2	1.7	5206	chr2R	6096717	intron	EcR -	chr2R	6099320	intron	EcR -	chr2R	6101923	intron	EcR -	chr2R_7_6095001	chr2R_6095001	RAL-367
362	chr2R	6494527	6494545	chr2R	6499289	6499307	F-element	5	4762	5.5	1.5	3.5	1.1	4780	chr2R	6494527	intergenic	not near genes	chr2R	6496917	intergenic	not near genes	chr2R	6499307	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	RAL-367
369	chr2R	7235821	7235850	chr2R	7240913	7240942	jockey	5	5092	2.5	2.0	2.2	1.6	5121	chr2R	7235821	intergenic	not near genes	chr2R	7238382	intergenic	not near genes	chr2R	7240942	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-367
371	chr2R	7434900	7434918	chr2R	7439201	7439219	Juan	4	4301	1.5	4.0	2.8	1.1	4319	chr2R	7434900	intergenic	so +	chr2R	7437060	intergenic	not near genes	chr2R	7439219	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-367
372	chr2R	7608411	7608435	chr2R	7613614	7613638	I-element	8	5202	0.5	0.5	0.5	5.3	5227	chr2R	7608411	intron	CG1358 -	chr2R	7611024	intron	CG1358 -	chr2R	7613638	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-367
374	chr2R	7869197	7869222	chr2R	7873983	7874008	Doc	5	4786	3.0	5.0	4.0	1.0	4811	chr2R	7869197	intron	Dgk -	chr2R	7871602	intron	Dgk -	chr2R	7874008	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-367
380	chr2R	8160934	8160953	chr2R	8161024	8161043	1360	5	90	3.0	6.5	4.8	0.9	109	chr2R	8160934	intron	CG8708 -	chr2R	8160988	intron	CG8708 -	chr2R	8161043	intron	CG8708 -	chr2R_5_8160001	chr2R_8160001	RAL-367
384	chr2R	8398227	8398242	chr2R	8402987	8403023	Doc	7	4778	2.5	2.5	2.5	2.0	4796	chr2R	8398227	intron	CG2121 -	chr2R	8400625	intron	CG2121 -	chr2R	8403023	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-367
389	chr2R	8722762	8722792	chr2R	8723003	8723033	pogo	7	241	3.0	2.0	2.5	2.0	271	chr2R	8722762	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	RAL-367
392	chr2R	9212701	9212712	chr2R	9213186	9213198	roo	5	486	4.0	3.0	3.5	1.1	497	chr2R	9212701	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213198	5` UTR	CR45309 +	chr2R_5_9210001	chr2R_9210001	RAL-367
393	chr2R	9212717	9212726	chr2R	9213183	9213212	roo	4	481	3.0	3.0	3.0	1.0	495	chr2R	9212717	intergenic	CR45309 +	chr2R	9212964	intergenic	CR45309 +	chr2R	9213212	5` UTR	CR45309 +	chr2R_4_9210001	chr2R_9210001	RAL-367
399	chr2R	9871041	9871065	chr2R	9871527	9871545	roo	7	485	2.5	3.5	3.0	1.8	504	chr2R	9871041	intron	cbx -	chr2R	9871293	intron	cbx -	chr2R	9871545	intron,5` UTR	cbx -,CG18446 +	chr2R_7_9870001	chr2R_9870001	RAL-367
401	chr2R	9945429	9945471	chr2R	9945625	9945637	BS	8	192	2.5	1.5	2.0	2.7	208	chr2R	9945429	intron	Mef2 -	chr2R	9945533	intron	Mef2 -	chr2R	9945637	intron	Mef2 -	chr2R_8_9945001	chr2R_9945001	RAL-367
403	chr2R	10005856	10005858	chr2R	10007021	10007023	1360	4	1165	8.5	4.5	6.5	0.5	1167	chr2R	10005856	intron	Pka-R2 -	chr2R	10006440	intron	Pka-R2 -	chr2R	10007023	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-367
413	chr2R	10622351	10622366	chr2R	10637115	10637130	mdg1	4	14764	0.0	0.0	0.0	4.0	14779	chr2R	10622351	intron	CG11883 +	chr2R	10629740	intron	CG11883 +	chr2R	10637130	intron	CG11883 +	chr2R_4_10625001	chr2R_10625001	RAL-367
419	chr2R	10948027	10948060	chr2R	10955578	10955608	17.6	6	7548	0.5	3.0	1.8	2.1	7581	chr2R	10948027	intergenic	not near genes	chr2R	10951818	intergenic	not near genes	chr2R	10955608	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-367
420	chr2R	11009814	11009846	chr2R	11018988	11019020	roo	12	9171	2.0	5.0	3.5	2.7	9206	chr2R	11009814	intron	luna -	chr2R	11014417	intron	luna -	chr2R	11019020	intron	luna -	chr2R_12_11010001	chr2R_11010001	RAL-367
421	chr2R	11019878	11019910	chr2R	11024944	11024976	jockey	8	5064	2.0	4.5	3.2	1.9	5098	chr2R	11019878	intron	luna -	chr2R	11022427	intron	luna -	chr2R	11024976	intron	luna -	chr2R_8_11020001	chr2R_11020001	RAL-367
423	chr2R	11207827	11207843	chr2R	11208013	11208036	BS	8	192	4.5	0.5	2.5	2.3	209	chr2R	11207827	intron	shn +	chr2R	11207932	intron	shn +	chr2R	11208036	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-367
426	chr2R	11415535	11415545	chr2R	11418676	11418694	opus	4	3147	2.5	4.0	3.2	1.0	3159	chr2R	11415535	intron	Drip -	chr2R	11417114	intron	Drip -	chr2R	11418694	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-367
439	chr2R	12501706	12501726	chr2R	12503858	12503868	Rt1c	6	2156	4.0	0.5	2.2	1.9	2162	chr2R	12501706	intron	fdl -	chr2R	12502787	intron	fdl -	chr2R	12503868	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-367
444	chr2R	12819456	12819478	chr2R	12824525	12824547	jockey	5	5069	1.5	8.5	5.0	0.8	5091	chr2R	12819456	intergenic	not near genes	chr2R	12822002	intergenic	not near genes	chr2R	12824547	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-367
446	chr2R	13136839	13136864	chr2R	13141637	13141662	Doc	9	4797	2.5	3.0	2.8	2.4	4823	chr2R	13136839	exon	Cap-G +	chr2R	13139250	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-367
462	chr2R	14394229	14394245	chr2R	14399018	14399034	Doc	5	4789	3.5	1.5	2.5	1.4	4805	chr2R	14394229	intergenic	not near genes	chr2R	14396632	intergenic	not near genes	chr2R	14399034	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-367
474	chr2R	15004724	15004755	chr2R	15005053	15005075	jockey	11	327	2.5	2.0	2.2	3.4	351	chr2R	15004724	intergenic	not near genes	chr2R	15004900	intergenic	not near genes	chr2R	15005075	intergenic	not near genes	chr2R_11_15000001	chr2R_15000001	RAL-367
475	chr2R	15015460	15015487	chr2R	15022884	15022891	mdg1	7	7420	1.0	2.0	1.5	2.8	7431	chr2R	15015460	intron	hbs +	chr2R	15019176	intron	hbs +	chr2R	15022891	intron	hbs +	chr2R_7_15015001	chr2R_15015001	RAL-367
477	chr2R	15119318	15119346	chr2R	15127799	15127817	Tirant	7	8479	3.0	3.0	3.0	1.8	8499	chr2R	15119318	intron	chn +	chr2R	15123568	intron	chn +	chr2R	15127817	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-367
492	chr2R	16539643	16539668	chr2R	16544852	16544877	copia	5	5209	2.0	0.5	1.2	2.3	5234	chr2R	16539643	intergenic	not near genes	chr2R	16542260	intergenic	not near genes	chr2R	16544877	intergenic	not near genes	chr2R_5_16540001	chr2R_16540001	RAL-367
499	chr2R	17147243	17147273	chr2R	17152274	17152304	jockey	7	5031	4.5	3.0	3.8	1.5	5061	chr2R	17147243	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152304	intergenic	not near genes	chr2R_7_17145001	chr2R_17145001	RAL-367
501	chr2R	17176365	17176381	chr2R	17182549	17182571	diver	5	6189	2.0	0.0	1.0	2.5	6206	chr2R	17176365	intergenic	not near genes	chr2R	17179468	intergenic	not near genes	chr2R	17182571	intergenic	not near genes	chr2R_5_17175001	chr2R_17175001	RAL-367
502	chr2R	17236506	17236536	chr2R	17241710	17241740	copia	9	5204	1.0	3.5	2.2	2.8	5234	chr2R	17236506	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241740	intron	mbl +	chr2R_9_17235001	chr2R_17235001	RAL-367
512	chr2R	18358402	18358422	chr2R	18372614	18372634	roo	6	14212	2.0	4.5	3.2	1.4	14232	chr2R	18358402	intergenic	not near genes	chr2R	18365518	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	RAL-367
518	chr2R	18575811	18575822	chr2R	18581989	18582010	3S18	5	6183	5.5	4.5	5.0	0.8	6199	chr2R	18575811	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582010	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-367
527	chr2R	19776593	19776625	chr2R	19779916	19779948	jockey	7	3323	1.5	3.0	2.2	2.2	3355	chr2R	19776593	intergenic	not near genes	chr2R	19778270	intergenic	not near genes	chr2R	19779948	intergenic	not near genes	chr2R_7_19775001	chr2R_19775001	RAL-367
528	chr2R	19914848	19914858	chr2R	19922260	19922270	mdg1	5	7412	4.5	5.0	4.8	0.9	7422	chr2R	19914848	intergenic	not near genes	chr2R	19918559	intergenic	not near genes	chr2R	19922270	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-367
529	chr2R	19914859	19914877	chr2R	19922259	19922289	mdg1	5	7410	2.0	4.5	3.2	1.2	7430	chr2R	19914859	intergenic	not near genes	chr2R	19918574	intergenic	not near genes	chr2R	19922289	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-367
530	chr2R	19957440	19957464	chr2R	19962642	19962666	copia	11	5200	4.0	5.0	4.5	2.0	5226	chr2R	19957440	intergenic	CG44623 +	chr2R	19960053	intergenic	not near genes	chr2R	19962666	intergenic	not near genes	chr2R_11_19960001	chr2R_19960001	RAL-367
542	chr2R	20739443	20739475	chr2R	20744211	20744243	F-element	9	4766	2.5	4.0	3.2	2.1	4800	chr2R	20739443	intron	dpr +	chr2R	20741843	intron	dpr +	chr2R	20744243	intron	dpr +	chr2R_9_20740001	chr2R_20740001	RAL-367
552	chr2R	21738283	21738308	chr2R	21747443	21747446	roo	10	9156	1.0	1.0	1.0	5.0	9163	chr2R	21738283	intergenic	not near genes	chr2R	21742864	intergenic	not near genes	chr2R	21747446	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	RAL-367
553	chr2R	21753092	21753114	chr2R	21753577	21753599	roo	7	484	4.0	4.0	4.0	1.4	507	chr2R	21753092	intergenic	not near genes	chr2R	21753346	intergenic	not near genes	chr2R	21753599	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-367
554	chr2R	21809532	21809558	chr2R	21817772	21817798	roo	7	8240	1.5	4.5	3.0	1.8	8266	chr2R	21809532	intergenic	not near genes	chr2R	21813665	intergenic	not near genes	chr2R	21817798	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-367
564	chr2R	22349692	22349721	chr2R	22351476	22351497	jockey	6	1782	5.5	3.5	4.5	1.1	1805	chr2R	22349692	intron	Liprin-gamma -	chr2R	22350594	intron	Liprin-gamma -	chr2R	22351497	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-367
567	chr2R	22465317	22465345	chr2R	22465516	22465544	BS	6	199	3.5	0.5	2.0	2.0	227	chr2R	22465317	intron	CG10384 +	chr2R	22465430	intron	CG10384 +	chr2R	22465544	intron	CG10384 +	chr2R_6_22465001	chr2R_22465001	RAL-367
571	chr2R	22774968	22775002	chr2R	22775387	22775421	jockey	9	418	2.0	2.0	2.0	3.0	453	chr2R	22774968	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775421	intron	CG42260 -	chr2R_9_22775001	chr2R_22775001	RAL-367
584	chr2R	23529573	23529589	chr2R	23537149	23537154	412	4	7573	3.5	2.5	3.0	1.0	7581	chr2R	23529573	intron	bw -	chr2R	23533364	intron	bw -	chr2R	23537154	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-367
587	chr2R	23914299	23914324	chr2R	23921923	23921948	412	8	7623	2.0	5.0	3.5	1.8	7649	chr2R	23914299	exon	kcc +	chr2R	23918124	intron	kcc +	chr2R	23921948	intron	kcc +	chr2R_8_23915001	chr2R_23915001	RAL-367
597	chr2R	24647587	24647613	chr2R	24655144	24655170	412	10	7556	3.5	3.0	3.2	2.4	7583	chr2R	24647587	intergenic	not near genes	chr2R	24651378	intergenic	not near genes	chr2R	24655170	intergenic	not near genes	chr2R_10_24650001	chr2R_24650001	RAL-367
598	chr2R	24727890	24727904	chr2R	24735396	24735412	mdg1	5	7508	2.5	2.5	2.5	1.4	7522	chr2R	24727890	intron	Mid1 -	chr2R	24731651	intron	Mid1 -	chr2R	24735412	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-367
599	chr2R	24763610	24763644	chr2R	24765586	24765620	G2	10	1971	2.0	0.5	1.2	4.5	2010	chr2R	24763610	exon	CG3894 +	chr2R	24764615	intron	CG3894 +	chr2R	24765620	exon	CG3894 +	chr2R_10_24760001	chr2R_24760001	RAL-367
613	chr3L	402689	402714	chr3L	409742	409767	297	7	7050	3.0	2.0	2.5	2.0	7078	chr3L	402689	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409767	intergenic	not near genes	chr3L_7_405001	chr3L_405001	RAL-367
619	chr3L	858001	858020	chr3L	866479	866501	Tirant	4	8480	4.5	2.0	3.2	1.0	8500	chr3L	858001	intergenic	not near genes	chr3L	862251	intergenic	not near genes	chr3L	866501	5` UTR	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-367
621	chr3L	925181	925205	chr3L	932607	932630	mdg1	7	7426	5.0	2.0	3.5	1.6	7449	chr3L	925181	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932630	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-367
623	chr3L	939776	939800	chr3L	940897	940921	jockey	6	1121	3.0	3.0	3.0	1.5	1145	chr3L	939776	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_6_940001	chr3L_940001	RAL-367
625	chr3L	1047351	1047385	chr3L	1055163	1055180	412	7	7801	4.0	3.0	3.5	1.6	7829	chr3L	1047351	intron	bab1 -	chr3L	1051266	intron	bab1 -	chr3L	1055180	intron	bab1 -	chr3L_7_1050001	chr3L_1050001	RAL-367
629	chr3L	1154139	1154162	chr3L	1163282	1163312	roo	6	9147	2.5	2.5	2.5	1.7	9173	chr3L	1154139	intron	bab2 -	chr3L	1158726	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_6_1155001	chr3L_1155001	RAL-367
631	chr3L	1219594	1219625	chr3L	1227327	1227358	412	7	7730	2.5	2.0	2.2	2.2	7764	chr3L	1219594	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227358	intron	mwh +	chr3L_7_1220001	chr3L_1220001	RAL-367
638	chr3L	1505996	1506031	chr3L	1513593	1513598	17.6	8	7592	3.5	1.5	2.5	2.3	7602	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509797	intron,intron	Psa +,cue -	chr3L	1513598	intron,intron	Psa +,cue -	chr3L_8_1505001	chr3L_1505001	RAL-367
648	chr3L	2447503	2447525	chr3L	2456659	2456662	roo	7	9153	8.0	2.5	5.2	1.1	9159	chr3L	2447503	intron	CG45186 +	chr3L	2452082	intron	CG45186 +	chr3L	2456662	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-367
657	chr3L	2927843	2927852	chr3L	2936120	2936129	Tirant	4	8277	4.0	2.0	3.0	1.0	8286	chr3L	2927843	intron	Shab +	chr3L	2931986	intron	Shab +	chr3L	2936129	intron	Shab +	chr3L_4_2930001	chr3L_2930001	RAL-367
658	chr3L	2927853	2927867	chr3L	2936114	2936144	Tirant	5	8274	3.0	1.5	2.2	1.6	8291	chr3L	2927853	intron	Shab +	chr3L	2931998	intron	Shab +	chr3L	2936144	intron	Shab +	chr3L_5_2930001	chr3L_2930001	RAL-367
659	chr3L	3061283	3061309	chr3L	3069866	3069892	Tirant	7	8581	2.5	0.5	1.5	2.8	8609	chr3L	3061283	intron	CG32486 -	chr3L	3065588	intron	CG32486 -	chr3L	3069892	intron	CG32486 -	chr3L_7_3065001	chr3L_3065001	RAL-367
661	chr3L	3281459	3281471	chr3L	3281937	3281967	Doc	4	490	4.0	6.5	5.2	0.6	508	chr3L	3281459	intron	CG12017 +	chr3L	3281713	intron	CG12017 +	chr3L	3281967	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-367
665	chr3L	3475080	3475110	chr3L	3475524	3475554	jockey	6	444	0.5	3.0	1.8	2.1	474	chr3L	3475080	intron	CG42324 +	chr3L	3475317	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-367
669	chr3L	3601296	3601332	chr3L	3606607	3606643	copia	9	5308	3.5	3.0	3.2	2.1	5347	chr3L	3601296	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606643	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	RAL-367
673	chr3L	3833741	3833769	chr3L	3833982	3834010	pogo	4	241	0.0	1.0	0.5	2.7	269	chr3L	3833741	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834010	intron	enc +	chr3L_4_3830001	chr3L_3830001	RAL-367
701	chr3L	5910037	5910058	chr3L	5910278	5910299	pogo	5	241	2.5	2.0	2.2	1.6	262	chr3L	5910037	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910299	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-367
702	chr3L	5926323	5926350	chr3L	5926513	5926540	BS	6	190	3.0	6.0	4.5	1.1	217	chr3L	5926323	intron	Vap-33B +	chr3L	5926432	intron	Vap-33B +	chr3L	5926540	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-367
703	chr3L	6001680	6001696	chr3L	6004380	6004396	jockey	6	2700	1.0	0.0	0.5	4.0	2716	chr3L	6001680	intron	PVRAP +	chr3L	6003038	intron	PVRAP +	chr3L	6004396	intron	PVRAP +	chr3L_6_6000001	chr3L_6000001	RAL-367
709	chr3L	6220918	6220936	chr3L	6230070	6230088	roo	6	9152	1.5	7.5	4.5	1.1	9170	chr3L	6220918	5` UTR	pncr008:3L +	chr3L	6225503	intergenic	not near genes	chr3L	6230088	intergenic	not near genes	chr3L_6_6225001	chr3L_6225001	RAL-367
714	chr3L	6855936	6855955	chr3L	6860717	6860738	Doc	5	4784	0.5	2.0	1.2	2.3	4802	chr3L	6855936	intergenic	not near genes	chr3L	6858337	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-367
715	chr3L	6887515	6887546	chr3L	6895007	6895038	roo	8	7492	3.0	1.5	2.2	2.5	7523	chr3L	6887515	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895038	intergenic	not near genes	chr3L_8_6890001	chr3L_6890001	RAL-367
719	chr3L	6994894	6994914	chr3L	6995505	6995525	BS	5	611	0.0	0.5	0.2	4.2	631	chr3L	6994894	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995525	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	RAL-367
726	chr3L	7793713	7793735	chr3L	7800765	7800787	297	6	7052	4.5	4.5	4.5	1.1	7074	chr3L	7793713	intron	CG32369 -	chr3L	7797250	intron	CG32369 -	chr3L	7800787	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-367
728	chr3L	7886519	7886547	chr3L	7889037	7889065	Stalker4	6	2517	0.5	2.0	1.2	2.7	2546	chr3L	7886519	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-367
729	chr3L	7985384	7985393	chr3L	7987711	7987721	NOF	4	2328	3.5	5.5	4.5	0.7	2337	chr3L	7985384	intron	nmo +	chr3L	7986552	intron	nmo +	chr3L	7987721	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-367
731	chr3L	8019702	8019736	chr3L	8024115	8024149	NOF	7	4412	1.0	1.0	1.0	3.5	4447	chr3L	8019702	intron	nmo +	chr3L	8021926	intron	nmo +	chr3L	8024149	intron	nmo +	chr3L_7_8020001	chr3L_8020001	RAL-367
734	chr3L	8481788	8481804	chr3L	8490929	8490963	roo	8	9152	2.5	0.0	1.2	3.6	9175	chr3L	8481788	intron	CG43163 -	chr3L	8486376	intron	CG43163 -	chr3L	8490963	intron	CG43163 -	chr3L_8_8485001	chr3L_8485001	RAL-367
735	chr3L	8498302	8498315	chr3L	8505763	8505781	blood	4	7465	2.5	2.5	2.5	1.1	7479	chr3L	8498302	intron	CG43163 -	chr3L	8502042	intron	CG43163 -	chr3L	8505781	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-367
738	chr3L	8791278	8791292	chr3L	8796698	8796712	I-element	4	5420	3.5	0.0	1.8	1.4	5434	chr3L	8791278	exon	Fhos +	chr3L	8793995	intron	Fhos +	chr3L	8796712	intron	Fhos +	chr3L_4_8790001	chr3L_8790001	RAL-367
740	chr3L	9076925	9076957	chr3L	9084485	9084517	412	13	7560	7.5	4.0	5.8	1.9	7592	chr3L	9076925	exon	Tequila +	chr3L	9080721	intron	Tequila +	chr3L	9084517	exon	Tequila +	chr3L_13_9080001	chr3L_9080001	RAL-367
741	chr3L	9130557	9130582	chr3L	9134318	9134343	412	6	3761	4.0	3.0	3.5	1.3	3786	chr3L	9130557	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_6_9130001	chr3L_9130001	RAL-367
742	chr3L	9164698	9164722	chr3L	9166165	9166189	hobo	5	1467	0.0	0.5	0.2	4.2	1491	chr3L	9164698	intron	Rdl -	chr3L	9165444	intron	Rdl -	chr3L	9166189	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-367
744	chr3L	9219242	9219275	chr3L	9219914	9219947	jockey	10	671	2.5	4.0	3.2	2.4	705	chr3L	9219242	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219947	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-367
747	chr3L	9501703	9501728	chr3L	9502189	9502214	roo	5	486	2.5	2.5	2.5	1.4	511	chr3L	9501703	intron	path -	chr3L	9501958	intron	path -	chr3L	9502214	intron	path -	chr3L_5_9500001	chr3L_9500001	RAL-367
749	chr3L	9575907	9575920	chr3L	9580985	9580995	jockey	5	5077	9.5	2.5	6.0	0.7	5088	chr3L	9575907	intron	CG42673 +	chr3L	9578451	intron	CG42673 +	chr3L	9580995	intron	CG42673 +	chr3L_5_9575001	chr3L_9575001	RAL-367
750	chr3L	9575921	9575937	chr3L	9580984	9581003	jockey	10	5072	7.5	2.5	5.0	1.7	5082	chr3L	9575921	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581003	intron	CG42673 +	chr3L_10_9575001	chr3L_9575001	RAL-367
755	chr3L	9929674	9929696	chr3L	9938454	9938476	roo	12	8779	3.0	0.5	1.8	4.3	8802	chr3L	9929674	intron	CG34356 +	chr3L	9934075	intron	CG34356 +	chr3L	9938476	intron	CG34356 +	chr3L_12_9930001	chr3L_9930001	RAL-367
766	chr3L	10414952	10414971	chr3L	10417324	10417343	Doc	5	2372	0.5	3.0	1.8	1.8	2391	chr3L	10414952	intergenic	CG12362 +	chr3L	10416148	intergenic	not near genes	chr3L	10417343	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-367
776	chr3L	11329689	11329725	chr3L	11332894	11332930	jockey	6	3201	3.0	3.0	3.0	1.5	3241	chr3L	11329689	intergenic	not near genes	chr3L	11331310	intergenic	not near genes	chr3L	11332930	intergenic	not near genes	chr3L_6_11330001	chr3L_11330001	RAL-367
781	chr3L	11564792	11564812	chr3L	11572417	11572422	412	4	7621	3.0	6.0	4.5	0.7	7630	chr3L	11564792	exon	CG33267 +	chr3L	11568607	intron	CG33267 +	chr3L	11572422	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-367
783	chr3L	11723081	11723105	chr3L	11727876	11727900	Doc	4	4795	5.5	0.5	3.0	1.0	4819	chr3L	11723081	3` UTR	Bmcp +	chr3L	11725490	intron	Bmcp +	chr3L	11727900	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-367
797	chr3L	12874960	12874963	chr3L	12877252	12877255	jockey	4	2292	0.0	1.5	0.8	2.2	2295	chr3L	12874960	intergenic	not near genes	chr3L	12876108	intergenic	not near genes	chr3L	12877255	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	RAL-367
799	chr3L	12919274	12919305	chr3L	12924747	12924778	Rt1c	10	5473	2.0	3.5	2.8	2.6	5504	chr3L	12919274	intergenic	not near genes	chr3L	12922026	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_10_12920001	chr3L_12920001	RAL-367
802	chr3L	12957806	12957818	chr3L	12962288	12962298	copia	5	4482	1.5	3.5	2.5	1.4	4492	chr3L	12957806	intergenic	not near genes	chr3L	12960052	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	RAL-367
811	chr3L	13525164	13525178	chr3L	13532960	13532967	roo	5	7795	5.5	3.0	4.2	1.0	7803	chr3L	13525164	intergenic	not near genes	chr3L	13529066	intergenic	not near genes	chr3L	13532967	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	RAL-367
817	chr3L	13804544	13804576	chr3L	13822830	13822862	roo	4	18286	1.0	3.5	2.2	1.2	18318	chr3L	13804544	intergenic	not near genes	chr3L	13813703	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-367
820	chr3L	14245575	14245589	chr3L	14245661	14245683	1360	4	92	6.5	3.5	5.0	0.7	108	chr3L	14245575	3` UTR	CR44561 -	chr3L	14245629	3` UTR	CR44561 -	chr3L	14245683	3` UTR	CR44561 -	chr3L_4_14245001	chr3L_14245001	RAL-367
821	chr3L	14267371	14267387	chr3L	14271811	14271827	F-element	6	4440	4.5	1.5	3.0	1.5	4456	chr3L	14267371	intergenic	not near genes	chr3L	14269599	intergenic	not near genes	chr3L	14271827	intergenic	not near genes	chr3L_6_14265001	chr3L_14265001	RAL-367
824	chr3L	14295984	14296016	chr3L	14296470	14296502	roo	9	486	2.5	1.0	1.8	3.2	518	chr3L	14295984	intron	fz +	chr3L	14296243	intron	fz +	chr3L	14296502	intron	fz +	chr3L_9_14295001	chr3L_14295001	RAL-367
830	chr3L	15085052	15085064	chr3L	15086217	15086230	1360	5	1165	2.5	3.0	2.8	1.3	1178	chr3L	15085052	intron	cp309 -	chr3L	15085641	intron	cp309 -	chr3L	15086230	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-367
842	chr3L	15899221	15899238	chr3L	15899787	15899795	jockey	4	564	1.5	1.0	1.2	1.8	574	chr3L	15899221	intergenic	pHCl -	chr3L	15899508	intergenic	pHCl -	chr3L	15899795	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-367
843	chr3L	15924298	15924303	chr3L	15941075	15941094	roo	4	16780	21.0	19.5	20.2	0.2	16796	chr3L	15924298	5` UTR	sff -	chr3L	15932696	intron	Pka-C3 -	chr3L	15941094	intron	Pka-C3 -	chr3L_4_15930001	chr3L_15930001	RAL-367
845	chr3L	16184108	16184136	chr3L	16188927	16188955	X-element	8	4826	0.0	2.5	1.2	3.6	4847	chr3L	16184108	intergenic	not near genes	chr3L	16186532	intergenic	not near genes	chr3L	16188955	intergenic	not near genes	chr3L_8_16185001	chr3L_16185001	RAL-367
848	chr3L	16443853	16443871	chr3L	16446193	16446211	Doc	4	2340	7.0	2.5	4.8	0.7	2358	chr3L	16443853	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446211	intron,intron	CG33158 +,dsx-c73A -	chr3L_4_16445001	chr3L_16445001	RAL-367
851	chr3L	16945726	16945758	chr3L	16954879	16954893	roo	17	9150	5.5	4.5	5.0	2.8	9167	chr3L	16945726	exon	Obp73a +	chr3L	16950310	intergenic	not near genes	chr3L	16954893	5` UTR	Nc73EF +	chr3L_17_16950001	chr3L_16950001	RAL-367
853	chr3L	17085009	17085031	chr3L	17094158	17094180	roo	6	9149	3.5	2.0	2.8	1.6	9171	chr3L	17085009	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094180	intron	Rbp6 -	chr3L_6_17085001	chr3L_17085001	RAL-367
855	chr3L	17516981	17517001	chr3L	17524539	17524559	412	10	7557	4.5	1.5	3.0	2.5	7578	chr3L	17516981	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524559	3` UTR	CG7564 +	chr3L_10_17520001	chr3L_17520001	RAL-367
868	chr3L	18506131	18506150	chr3L	18509594	18509613	F-element	5	3463	3.5	0.5	2.0	1.7	3482	chr3L	18506131	intergenic	not near genes	chr3L	18507872	intergenic	not near genes	chr3L	18509613	intergenic	not near genes	chr3L_5_18505001	chr3L_18505001	RAL-367
870	chr3L	18772410	18772435	chr3L	18781091	18781116	roo	8	8681	2.0	2.0	2.0	2.7	8706	chr3L	18772410	intron	ftz-f1 -	chr3L	18776763	intron	ftz-f1 -	chr3L	18781116	intron	ftz-f1 -	chr3L_8_18775001	chr3L_18775001	RAL-367
873	chr3L	19008834	19008874	chr3L	19009176	19009212	jockey	6	338	0.0	1.0	0.5	4.0	378	chr3L	19008834	intron	nkd -	chr3L	19009023	intron	nkd -	chr3L	19009212	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-367
874	chr3L	19115642	19115671	chr3L	19115818	19115850	BS	11	178	2.0	4.0	3.0	2.8	208	chr3L	19115642	intron	CG14082 -	chr3L	19115746	intron	CG14082 -	chr3L	19115850	intron	CG14082 -	chr3L_11_19115001	chr3L_19115001	RAL-367
875	chr3L	19117040	19117075	chr3L	19124487	19124522	mdg1	10	7447	3.0	0.5	1.8	3.6	7482	chr3L	19117040	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	RAL-367
878	chr3L	19208058	19208087	chr3L	19209432	19209461	Doc	14	1373	1.5	1.5	1.5	5.6	1403	chr3L	19208058	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209461	intron	fz2 -	chr3L_14_19205001	chr3L_19205001	RAL-367
883	chr3L	19848505	19848532	chr3L	19857695	19857723	roo	5	9191	3.5	2.5	3.0	1.2	9218	chr3L	19848505	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857723	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-367
884	chr3L	19861827	19861853	chr3L	19863615	19863641	S-element	7	1788	1.0	3.0	2.0	2.3	1814	chr3L	19861827	5` UTR	CR45433 +	chr3L	19862734	intergenic	not near genes	chr3L	19863641	intergenic	not near genes	chr3L_7_19860001	chr3L_19860001	RAL-367
889	chr3L	20257334	20257361	chr3L	20258454	20258481	pogo	7	1120	0.0	0.5	0.2	5.8	1147	chr3L	20257334	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258481	intron	rdgC +	chr3L_7_20255001	chr3L_20255001	RAL-367
892	chr3L	20590064	20590096	chr3L	20590603	20590635	412	8	535	1.0	4.5	2.8	2.1	571	chr3L	20590064	intergenic	not near genes	chr3L	20590350	intergenic	not near genes	chr3L	20590635	intergenic	not near genes	chr3L_8_20590001	chr3L_20590001	RAL-367
899	chr3L	21151883	21151896	chr3L	21156957	21156980	flea	4	5082	2.0	0.0	1.0	2.0	5097	chr3L	21151883	intron	Ac78C -	chr3L	21154432	intron	Ac78C -	chr3L	21156980	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-367
900	chr3L	21243754	21243764	chr3L	21251317	21251327	412	4	7563	4.0	5.5	4.8	0.7	7573	chr3L	21243754	intron	Eip78C +	chr3L	21247540	intron	Eip78C +	chr3L	21251327	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-367
904	chr3L	21498842	21498861	chr3L	21500477	21500497	1360	5	1635	1.0	3.5	2.2	1.6	1655	chr3L	21498842	intron	Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500497	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-367
910	chr3L	22099673	22099687	chr3L	22105859	22105871	3S18	4	6185	3.0	1.5	2.2	1.2	6198	chr3L	22099673	intergenic	not near genes	chr3L	22102772	intergenic	not near genes	chr3L	22105871	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-367
914	chr3L	22555772	22555802	chr3L	22563242	22563272	blood	7	7469	0.5	3.0	1.8	2.5	7500	chr3L	22555772	intergenic	not near genes	chr3L	22559522	intergenic	not near genes	chr3L	22563272	intergenic	not near genes	chr3L_7_22555001	chr3L_22555001	RAL-367
916	chr3L	22577617	22577644	chr3L	22582405	22582412	Doc	4	4782	2.0	4.5	3.2	1.0	4795	chr3L	22577617	intergenic	not near genes	chr3L	22580014	intergenic	not near genes	chr3L	22582412	3` UTR	CG14459 -	chr3L_4_22580001	chr3L_22580001	RAL-367
917	chr3L	22617191	22617211	chr3L	22624643	22624654	blood	7	7451	1.0	3.5	2.2	2.2	7463	chr3L	22617191	intron	CG14459 -	chr3L	22620922	intron	CG14459 -	chr3L	22624654	intron	CG14459 -	chr3L_7_22620001	chr3L_22620001	RAL-367
920	chr3L	22761383	22761412	chr3L	22766817	22766846	Ivk	5	5434	1.0	0.5	0.8	2.8	5463	chr3L	22761383	intron	SPoCk +	chr3L	22764114	intron	SPoCk +	chr3L	22766846	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-367
922	chr3L	22865987	22866007	chr3L	22867120	22867140	Doc	4	1133	3.0	1.0	2.0	1.3	1153	chr3L	22865987	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867140	intron	CG33170 +	chr3L_4_22865001	chr3L_22865001	RAL-367
925	chr3L	22989860	22989895	chr3L	22996834	22996869	297	7	6974	1.5	1.0	1.2	3.2	7009	chr3L	22989860	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996869	intergenic	not near genes	chr3L_7_22990001	chr3L_22990001	RAL-367
926	chr3L	23042224	23042254	chr3L	23048977	23049004	gypsy6	5	6751	5.0	6.0	5.5	0.8	6780	chr3L	23042224	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049004	intergenic	not near genes	chr3L_5_23045001	chr3L_23045001	RAL-367
935	chr3R	4105050	4105059	chr3R	4110254	4110263	copia	4	5204	2.0	1.5	1.8	1.4	5213	chr3R	4105050	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110263	intergenic	not near genes	chr3R_4_4105001	chr3R_4105001	RAL-367
936	chr3R	4408405	4408442	chr3R	4412709	4412746	Juan	7	4304	2.0	1.5	1.8	2.5	4341	chr3R	4408405	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412746	intron	CG32944 -	chr3R_7_4410001	chr3R_4410001	RAL-367
937	chr3R	4609548	4609563	chr3R	4610712	4610727	1360	7	1164	5.5	5.0	5.2	1.1	1179	chr3R	4609548	intergenic	not near genes	chr3R	4610138	intergenic	not near genes	chr3R	4610727	intergenic	not near genes	chr3R_7_4610001	chr3R_4610001	RAL-367
941	chr3R	4887485	4887503	chr3R	4894862	4894879	rover	5	7377	4.5	6.0	5.2	0.8	7394	chr3R	4887485	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894879	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-367
944	chr3R	5067987	5068014	chr3R	5073504	5073531	mdg3	4	5517	1.0	2.5	1.8	1.4	5544	chr3R	5067987	intergenic	not near genes	chr3R	5070759	intergenic	not near genes	chr3R	5073531	intergenic	not near genes	chr3R_4_5070001	chr3R_5070001	RAL-367
950	chr3R	5746024	5746042	chr3R	5746264	5746283	pogo	4	241	3.0	4.5	3.8	0.8	259	chr3R	5746024	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746283	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-367
952	chr3R	5809112	5809136	chr3R	5809353	5809377	pogo	8	241	4.0	1.5	2.8	2.1	265	chr3R	5809112	3` UTR	CG11000 +	chr3R	5809244	3` UTR	CG11000 +	chr3R	5809377	3` UTR	CG11000 +	chr3R_8_5805001	chr3R_5805001	RAL-367
953	chr3R	5822382	5822413	chr3R	5823549	5823580	1360	4	1165	3.5	4.0	3.8	0.8	1198	chr3R	5822382	3` UTR	CG2023 -	chr3R	5822981	3` UTR	CG2023 -	chr3R	5823580	3` UTR	CG2023 -	chr3R_4_5820001	chr3R_5820001	RAL-367
957	chr3R	6015963	6015995	chr3R	6024444	6024476	Tirant	11	8478	1.0	1.5	1.2	5.0	8513	chr3R	6015963	intergenic	not near genes	chr3R	6020220	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_11_6020001	chr3R_6020001	RAL-367
960	chr3R	6158518	6158530	chr3R	6167101	6167105	Tirant	4	8581	5.0	3.5	4.2	0.8	8587	chr3R	6158518	intergenic	not near genes	chr3R	6162812	intergenic	not near genes	chr3R	6167105	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	RAL-367
964	chr3R	6737501	6737531	chr3R	6739286	6739318	Doc	4	1783	1.0	3.5	2.2	1.2	1817	chr3R	6737501	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739318	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-367
981	chr3R	7729477	7729495	chr3R	7737415	7737433	Stalker2	5	7938	1.5	3.5	2.5	1.4	7956	chr3R	7729477	intergenic	not near genes	chr3R	7733455	intergenic	not near genes	chr3R	7737433	intergenic	not near genes	chr3R_5_7730001	chr3R_7730001	RAL-367
984	chr3R	7849642	7849675	chr3R	7850809	7850842	1360	6	1167	2.0	4.5	3.2	1.4	1200	chr3R	7849642	intron	CG34384 +	chr3R	7850242	intron	CG34384 +	chr3R	7850842	intron	CG34384 +	chr3R_6_7850001	chr3R_7850001	RAL-367
987	chr3R	8094407	8094441	chr3R	8099712	8099746	Transpac	6	5305	1.5	2.0	1.8	2.1	5339	chr3R	8094407	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099746	intron	CG7900 +	chr3R_6_8095001	chr3R_8095001	RAL-367
988	chr3R	8207553	8207585	chr3R	8208398	8208430	F-element	8	844	2.0	4.0	3.0	2.0	877	chr3R	8207553	intergenic	not near genes	chr3R	8207992	intergenic	not near genes	chr3R	8208430	intergenic	not near genes	chr3R_8_8205001	chr3R_8205001	RAL-367
990	chr3R	8403010	8403036	chr3R	8412176	8412202	roo	7	9166	3.5	3.5	3.5	1.6	9192	chr3R	8403010	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412202	intron	CG45263 -	chr3R_7_8405001	chr3R_8405001	RAL-367
992	chr3R	8570478	8570511	chr3R	8575114	8575136	HMS-Beagle	20	4634	1.5	3.5	2.5	5.7	4658	chr3R	8570478	intergenic	not near genes	chr3R	8572807	intergenic	not near genes	chr3R	8575136	intergenic	not near genes	chr3R_20_8570001	chr3R_8570001	RAL-367
994	chr3R	8601767	8601799	chr3R	8610920	8610952	roo	13	9152	2.0	1.0	1.5	5.2	9185	chr3R	8601767	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610952	intron	5-HT2B +	chr3R_13_8605001	chr3R_8605001	RAL-367
996	chr3R	8707355	8707382	chr3R	8709796	8709823	jockey	12	2441	4.5	3.0	3.8	2.5	2468	chr3R	8707355	intergenic	not near genes	chr3R	8708589	intergenic	not near genes	chr3R	8709823	intergenic	not near genes	chr3R_12_8705001	chr3R_8705001	RAL-367
1005	chr3R	9319577	9319607	chr3R	9320012	9320042	jockey	5	435	2.0	4.5	3.2	1.2	465	chr3R	9319577	intron	CG8861 -	chr3R	9319810	intron	CG8861 -	chr3R	9320042	intron	CG8861 -	chr3R_5_9315001	chr3R_9315001	RAL-367
1055	chr3R	12920152	12920181	chr3R	12925355	12925384	copia	9	5201	4.0	4.5	4.2	1.7	5232	chr3R	12920152	intron	beat-Vb +	chr3R	12922768	intron	beat-Vb +	chr3R	12925384	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	RAL-367
1058	chr3R	13143048	13143059	chr3R	13148624	13148635	mdg3	6	5575	1.5	3.0	2.2	1.9	5587	chr3R	13143048	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148635	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13145001	chr3R_13145001	RAL-367
1059	chr3R	13143061	13143066	chr3R	13148621	13148642	mdg3	4	5568	1.0	2.5	1.8	1.4	5581	chr3R	13143061	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145852	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148642	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13145001	chr3R_13145001	RAL-367
1072	chr3R	14246396	14246417	chr3R	14247892	14247894	jockey	4	1491	4.0	3.5	3.8	0.8	1498	chr3R	14246396	intergenic	not near genes	chr3R	14247145	intergenic	not near genes	chr3R	14247894	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-367
1082	chr3R	15041424	15041450	chr3R	15045192	15045218	Doc	4	3768	2.0	1.0	1.5	1.6	3794	chr3R	15041424	intergenic	not near genes	chr3R	15043321	intergenic	not near genes	chr3R	15045218	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	RAL-367
1084	chr3R	15601173	15601194	chr3R	15608695	15608716	412	9	7521	3.5	7.0	5.2	1.5	7543	chr3R	15601173	intergenic	not near genes	chr3R	15604944	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_9_15600001	chr3R_15600001	RAL-367
1086	chr3R	15618753	15618764	chr3R	15626227	15626238	blood	4	7474	0.5	3.5	2.0	1.3	7485	chr3R	15618753	intergenic	not near genes	chr3R	15622496	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-367
1093	chr3R	16756320	16756348	chr3R	16762511	16762528	diver	10	6190	2.0	2.0	2.0	3.3	6208	chr3R	16756320	intron	bxd -	chr3R	16759424	intron	bxd -	chr3R	16762528	intron	bxd -	chr3R_10_16755001	chr3R_16755001	RAL-367
1099	chr3R	17294668	17294699	chr3R	17295095	17295126	BS	4	428	0.5	2.5	1.5	1.6	458	chr3R	17294668	intergenic	not near genes	chr3R	17294897	intergenic	not near genes	chr3R	17295126	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-367
1106	chr3R	17591290	17591315	chr3R	17591726	17591751	F-element	5	433	6.0	3.0	4.5	0.9	461	chr3R	17591290	intergenic	not near genes	chr3R	17591520	intergenic	not near genes	chr3R	17591751	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	RAL-367
1109	chr3R	17925859	17925884	chr3R	17927322	17927351	hobo	8	1466	3.5	5.0	4.2	1.5	1492	chr3R	17925859	intron	cpo +	chr3R	17926605	intron	cpo +	chr3R	17927351	intron	cpo +	chr3R_8_17925001	chr3R_17925001	RAL-367
1116	chr3R	18606507	18606527	chr3R	18610739	18610759	F-element	5	4232	3.5	1.0	2.2	1.6	4252	chr3R	18606507	intron,intron	qin +,CG14304 -	chr3R	18608633	intron,intron	qin +,CG14304 -	chr3R	18610759	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-367
1134	chr3R	20109542	20109569	chr3R	20114748	20114775	copia	9	5204	1.0	3.5	2.2	2.8	5233	chr3R	20109542	intergenic	not near genes	chr3R	20112158	intergenic	not near genes	chr3R	20114775	intergenic	CG10887 +	chr3R_9_20110001	chr3R_20110001	RAL-367
1135	chr3R	20156695	20156723	chr3R	20165865	20165893	roo	4	9170	5.0	2.0	3.5	0.9	9198	chr3R	20156695	intergenic	not near genes	chr3R	20161294	intergenic	not near genes	chr3R	20165893	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-367
1138	chr3R	20266519	20266542	chr3R	20272985	20273013	Burdock	6	6470	3.0	1.5	2.2	1.9	6494	chr3R	20266519	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273013	intron	cic +	chr3R_6_20265001	chr3R_20265001	RAL-367
1141	chr3R	20506586	20506600	chr3R	20507389	20507397	BS	4	802	1.0	1.5	1.2	1.8	811	chr3R	20506586	intergenic	Or92a +	chr3R	20506992	intergenic	CG4288 -	chr3R	20507397	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-367
1150	chr3R	21141680	21141703	chr3R	21150156	21150174	Tirant	4	8477	3.0	5.0	4.0	0.8	8494	chr3R	21141680	intron	SNF4Agamma +	chr3R	21145927	intron	SNF4Agamma +	chr3R	21150174	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-367
1156	chr3R	21609002	21609034	chr3R	21611636	21611668	NOF	8	2634	2.0	3.0	2.5	2.3	2666	chr3R	21609002	intron	InR -	chr3R	21610335	intron	InR -	chr3R	21611668	intron	InR -	chr3R_8_21610001	chr3R_21610001	RAL-367
1159	chr3R	21761126	21761151	chr3R	21768518	21768528	mdg1	10	7387	3.5	5.5	4.5	1.8	7402	chr3R	21761126	exon	CG42335 +	chr3R	21764827	intron	CG42335 +	chr3R	21768528	exon	CG42335 +	chr3R_10_21760001	chr3R_21760001	RAL-367
1166	chr3R	22234687	22234711	chr3R	22236006	22236030	pogo	6	1319	2.5	0.5	1.5	2.4	1343	chr3R	22234687	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236030	intron	SKIP +	chr3R_6_22235001	chr3R_22235001	RAL-367
1171	chr3R	22450540	22450578	chr3R	22453180	22453208	NOF	12	2639	3.0	6.0	4.5	2.2	2668	chr3R	22450540	intron	CG34376 +	chr3R	22451874	intron	CG34376 +	chr3R	22453208	intron	CG34376 +	chr3R_12_22450001	chr3R_22450001	RAL-367
1190	chr3R	23684695	23684707	chr3R	23685181	23685193	roo	4	486	5.0	3.0	4.0	0.8	498	chr3R	23684695	exon	CG18754 +	chr3R	23684944	intron	CG18754 +	chr3R	23685193	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-367
1193	chr3R	24072091	24072102	chr3R	24072529	24072540	jockey	6	438	5.0	0.5	2.8	1.6	449	chr3R	24072091	intron	4EHP -	chr3R	24072316	intron	4EHP -	chr3R	24072540	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-367
1195	chr3R	24207217	24207242	chr3R	24212293	24212318	flea	4	5075	5.0	4.5	4.8	0.7	5101	chr3R	24207217	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212318	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-367
1198	chr3R	24493286	24493306	chr3R	24493514	24493535	BS	4	229	1.0	3.0	2.0	1.3	249	chr3R	24493286	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493535	intergenic	not near genes	chr3R_4_24490001	chr3R_24490001	RAL-367
1202	chr3R	24730091	24730119	chr3R	24732469	24732497	Doc	7	2378	2.0	0.5	1.2	3.2	2406	chr3R	24730091	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732497	intron	tok +	chr3R_7_24730001	chr3R_24730001	RAL-367
1215	chr3R	25832711	25832723	chr3R	25841878	25841905	roo	5	9179	4.0	4.0	4.0	1.0	9194	chr3R	25832711	exon	alpha4GT2 +	chr3R	25837308	intron	alpha4GT2 +	chr3R	25841905	exon	alpha4GT2 +	chr3R_5_25835001	chr3R_25835001	RAL-367
1223	chr3R	26376323	26376355	chr3R	26385483	26385515	roo	6	9158	1.0	0.0	0.5	4.0	9192	chr3R	26376323	intergenic	not near genes	chr3R	26380919	intergenic	not near genes	chr3R	26385515	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-367
1228	chr3R	26642730	26642760	chr3R	26643123	26643142	jockey	9	391	1.5	3.0	2.2	2.8	412	chr3R	26642730	intergenic	not near genes	chr3R	26642936	intergenic	not near genes	chr3R	26643142	intergenic	not near genes	chr3R_9_26640001	chr3R_26640001	RAL-367
1234	chr3R	27007413	27007429	chr3R	27016548	27016564	roo	5	9135	2.5	1.0	1.8	1.8	9151	chr3R	27007413	intron	RYa-R +	chr3R	27011988	intron	RYa-R +	chr3R	27016564	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-367
1236	chr3R	27140513	27140547	chr3R	27148123	27148157	412	10	7610	3.5	2.0	2.8	2.6	7644	chr3R	27140513	intron	CG6051 -	chr3R	27144335	intron	CG6051 -	chr3R	27148157	intron	CG6051 -	chr3R_10_27140001	chr3R_27140001	RAL-367
1240	chr3R	27342791	27342824	chr3R	27351372	27351405	Tirant	7	8578	0.5	1.0	0.8	3.9	8614	chr3R	27342791	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-367
1250	chr3R	27856759	27856793	chr3R	27858242	27858275	hopper2	13	1483	1.0	2.5	1.8	4.6	1516	chr3R	27856759	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858275	intron	CG34353 -	chr3R_13_27855001	chr3R_27855001	RAL-367
1251	chr3R	27862953	27862986	chr3R	27868258	27868291	Transpac	12	5304	2.0	3.0	2.5	3.4	5338	chr3R	27862953	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868291	intron	CG34353 -	chr3R_12_27865001	chr3R_27865001	RAL-367
1252	chr3R	27875708	27875727	chr3R	27882753	27882782	297	6	7053	4.0	2.0	3.0	1.5	7074	chr3R	27875708	intron	CG34353 -	chr3R	27879245	intron	CG34353 -	chr3R	27882782	intron	CG34353 -	chr3R_6_27875001	chr3R_27875001	RAL-367
1256	chr3R	28068493	28068523	chr3R	28073935	28073965	I-element	8	5442	0.0	3.5	1.8	2.9	5472	chr3R	28068493	intron	CG34362 +	chr3R	28071229	intron	CG34362 +	chr3R	28073965	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	RAL-367
1260	chr3R	28173672	28173700	chr3R	28181102	28181130	mdg1	7	7430	1.0	3.0	2.0	2.3	7458	chr3R	28173672	intron	CG34354 +	chr3R	28177401	intron	CG34354 +	chr3R	28181130	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	RAL-367
1261	chr3R	28253351	28253373	chr3R	28255860	28255883	jockey	7	2510	3.0	5.5	4.2	1.3	2532	chr3R	28253351	intergenic	not near genes	chr3R	28254617	intergenic	not near genes	chr3R	28255883	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-367
1271	chr3R	28763902	28763918	chr3R	28771345	28771361	Stalker4	5	7443	0.0	1.5	0.8	2.8	7459	chr3R	28763902	intergenic	not near genes	chr3R	28767632	intergenic	not near genes	chr3R	28771361	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-367
1272	chr3R	28792880	28792891	chr3R	28797969	28797986	jockey	4	5094	6.0	2.5	4.2	0.8	5106	chr3R	28792880	intergenic	not near genes	chr3R	28795433	intergenic	not near genes	chr3R	28797986	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	RAL-367
1285	chr3R	29406624	29406647	chr3R	29407910	29407933	jockey	9	1286	1.5	4.0	2.8	2.4	1309	chr3R	29406624	intron	Ptp99A +	chr3R	29407278	intron	Ptp99A +	chr3R	29407933	intron	Ptp99A +	chr3R_9_29405001	chr3R_29405001	RAL-367
1294	chr3R	29738266	29738297	chr3R	29739733	29739760	hobo	8	1465	2.0	4.0	3.0	2.0	1494	chr3R	29738266	intergenic	CG1969 +,CG7598 +	chr3R	29739013	intron	CG1969 +	chr3R	29739760	5` UTR	CG1969 +	chr3R_8_29735001	chr3R_29735001	RAL-367
1298	chr3R	30084851	30084877	chr3R	30086318	30086344	hobo	15	1465	5.0	3.5	4.2	2.9	1493	chr3R	30084851	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086344	intron	sima +	chr3R_15_30085001	chr3R_30085001	RAL-367
1302	chr3R	30317338	30317358	chr3R	30324930	30324950	roo	5	7592	0.0	3.0	1.5	2.0	7612	chr3R	30317338	intron	hdc +	chr3R	30321144	intron	hdc +	chr3R	30324950	intron	hdc +	chr3R_5_30320001	chr3R_30320001	RAL-367
1305	chr3R	30375548	30375568	chr3R	30383173	30383183	412	4	7622	2.0	3.5	2.8	1.1	7635	chr3R	30375548	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383183	intergenic	not near genes	chr3R_4_30375001	chr3R_30375001	RAL-367
1306	chr3R	30396230	30396246	chr3R	30404496	30404512	roo	4	8266	1.5	3.5	2.5	1.1	8282	chr3R	30396230	intergenic	not near genes	chr3R	30400371	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-367
1307	chr3R	30480473	30480509	chr3R	30482941	30482977	jockey	17	2466	1.5	3.5	2.5	4.9	2504	chr3R	30480473	intron	PH4alphaEFB +	chr3R	30481725	intron	PH4alphaEFB +	chr3R	30482977	intron	PH4alphaEFB +	chr3R_17_30480001	chr3R_30480001	RAL-367
1312	chr3R	30679533	30679551	chr3R	30687002	30687020	blood	5	7469	3.0	5.5	4.2	1.0	7487	chr3R	30679533	intergenic	not near genes	chr3R	30683276	intergenic	not near genes	chr3R	30687020	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	RAL-367
1316	chr3R	31279373	31279396	chr3R	31285564	31285587	diver	7	6191	5.5	2.0	3.8	1.5	6214	chr3R	31279373	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285587	intergenic	not near genes	chr3R_7_31280001	chr3R_31280001	RAL-367
1319	chr3R	31413088	31413120	chr3R	31418288	31418318	copia	6	5199	1.5	0.5	1.0	3.0	5230	chr3R	31413088	intron	Gprk2 +	chr3R	31415703	intron	Gprk2 +	chr3R	31418318	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-367
1321	chr3R	31691533	31691558	chr3R	31696299	31696324	Doc	14	4765	3.0	6.0	4.5	2.5	4791	chr3R	31691533	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696324	intergenic	not near genes	chr3R_14_31690001	chr3R_31690001	RAL-367
1324	chr3R	31997998	31998018	chr3R	32005468	32005488	blood	5	7470	4.0	1.5	2.8	1.3	7490	chr3R	31997998	intron	heph -	chr3R	32001743	intron	heph -	chr3R	32005488	intron	heph -	chr3R_5_32000001	chr3R_32000001	RAL-367
1326	chr4	76492	76506	chr4	81935	81949	I-element	4	5443	3.5	2.0	2.8	1.1	5457	chr4	76492	intron	pan +	chr4	79220	intron	pan +	chr4	81949	intron	pan +	chr4_4_75001	chr4_75001	RAL-367
1327	chr4	320000	320009	chr4	328176	328185	Stalker2	4	8176	1.5	1.5	1.5	1.6	8185	chr4	320000	3` UTR	CG32850 +	chr4	324092	intron	CG32850 +	chr4	328185	3` UTR	CG32850 +	chr4_4_320001	chr4_320001	RAL-367
1328	chr4	671607	671636	chr4	680190	680219	Tirant	7	8579	5.0	4.5	4.8	1.2	8612	chr4	671607	intron	CG11360 +	chr4	675913	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_7_675001	chr4_675001	RAL-367
1331	chrX	551421	551453	chrX	558983	559015	412	8	7558	2.5	3.0	2.8	2.1	7594	chrX	551421	intron	Appl +	chrX	555218	intron	Appl +	chrX	559015	intron	Appl +	chrX_8_555001	chrX_555001	RAL-367
1339	chrX	906708	906733	chrX	908497	908522	S-element	6	1789	3.0	3.0	3.0	1.5	1814	chrX	906708	intron	CG43867 -	chrX	907615	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-367
1345	chrX	1357782	1357807	chrX	1367946	1367977	Doc	7	10169	2.5	1.0	1.8	2.5	10195	chrX	1357782	intergenic	png -	chrX	1362880	intergenic	not near genes	chrX	1367977	intergenic	not near genes	chrX_7_1360001	chrX_1360001	RAL-367
1346	chrX	1518041	1518074	chrX	1523439	1523475	jockey	8	5399	3.0	3.5	3.2	1.9	5434	chrX	1518041	intergenic	inc +	chrX	1520758	intergenic	not near genes	chrX	1523475	intergenic	not near genes	chrX_8_1520001	chrX_1520001	RAL-367
1348	chrX	1627975	1627996	chrX	1635443	1635464	gtwin	4	7468	4.5	2.5	3.5	0.9	7489	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635464	intron,intron	Mur2B -,br +	chrX_4_1630001	chrX_1630001	RAL-367
1350	chrX	2399835	2399868	chrX	2408188	2408221	roo	7	8346	1.0	3.5	2.2	2.2	8386	chrX	2399835	intergenic	not near genes	chrX	2404028	intergenic	not near genes	chrX	2408221	intergenic	not near genes	chrX_7_2400001	chrX_2400001	RAL-367
1355	chrX	2664387	2664420	chrX	2665528	2665566	1360	5	1145	0.0	1.5	0.8	2.8	1179	chrX	2664387	intron	sgg +	chrX	2664976	intron	sgg +	chrX	2665566	intron	sgg +	chrX_5_2660001	chrX_2660001	RAL-367
1360	chrX	3415036	3415045	chrX	3421221	3421230	3S18	5	6185	3.5	1.0	2.2	1.6	6194	chrX	3415036	intron,intron	CR44999 +,CG12535 -	chrX	3418133	intron,intron	CR44999 +,CG12535 -	chrX	3421230	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-367
1361	chrX	3493095	3493112	chrX	3502248	3502269	roo	5	9155	2.5	1.5	2.0	1.7	9174	chrX	3493095	intron,intron	CR44999 +,Gas8 -	chrX	3497682	intron,intron	CR44999 +,Gas8 -	chrX	3502269	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	RAL-367
1362	chrX	3597555	3597564	chrX	3619723	3619732	roo	5	22168	3.5	1.5	2.5	1.4	22177	chrX	3597555	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619732	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-367
1363	chrX	3726765	3726792	chrX	3730158	3730189	NOF	4	3394	2.5	1.0	1.8	1.4	3424	chrX	3726765	intron	tlk +	chrX	3728477	intron	tlk +	chrX	3730189	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-367
1364	chrX	3842327	3842347	chrX	3842568	3842588	pogo	4	241	2.5	1.0	1.8	1.4	261	chrX	3842327	intron	ec +	chrX	3842458	intron	ec +	chrX	3842588	intron	ec +	chrX_4_3840001	chrX_3840001	RAL-367
1372	chrX	4731815	4731834	chrX	4736908	4736922	jockey	6	5092	3.0	0.0	1.5	2.4	5107	chrX	4731815	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_6_4730001	chrX_4730001	RAL-367
1374	chrX	4763269	4763281	chrX	4763757	4763769	Stalker4	4	488	3.0	2.0	2.5	1.1	500	chrX	4763269	intergenic	not near genes	chrX	4763519	intergenic	not near genes	chrX	4763769	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-367
1375	chrX	4827974	4827994	chrX	4835340	4835365	Stalker4	4	7370	1.0	2.0	1.5	1.6	7391	chrX	4827974	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835365	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-367
1381	chrX	5481071	5481091	chrX	5485039	5485059	I-element	5	3968	0.0	0.5	0.2	4.2	3988	chrX	5481071	intron	SPR +	chrX	5483065	intron	SPR +	chrX	5485059	intron	SPR +	chrX_5_5480001	chrX_5480001	RAL-367
1385	chrX	6171581	6171609	chrX	6179014	6179042	Quasimodo	7	7433	3.0	1.5	2.2	2.2	7461	chrX	6171581	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179042	intron	Ca-alpha1T -	chrX_7_6175001	chrX_6175001	RAL-367
1387	chrX	6392873	6392896	chrX	6397638	6397661	Doc	6	4765	1.5	3.5	2.5	1.7	4788	chrX	6392873	intergenic	not near genes	chrX	6395267	intergenic	not near genes	chrX	6397661	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-367
1388	chrX	6605485	6605504	chrX	6608507	6608526	Burdock	7	3022	1.5	2.0	1.8	2.5	3041	chrX	6605485	intron	pigs +	chrX	6607006	intron	pigs +	chrX	6608526	intron	pigs +	chrX_7_6605001	chrX_6605001	RAL-367
1390	chrX	7023616	7023628	chrX	7031006	7031018	Tabor	4	7390	4.0	2.0	3.0	1.0	7402	chrX	7023616	intron	CG12541 -	chrX	7027317	intron	CG12541 -	chrX	7031018	intron	CG12541 -	chrX_4_7025001	chrX_7025001	RAL-367
1391	chrX	7125247	7125279	chrX	7134406	7134438	roo	6	9159	0.5	5.5	3.0	1.5	9191	chrX	7125247	intergenic	not near genes	chrX	7129842	intergenic	not near genes	chrX	7134438	intergenic	not near genes	chrX_6_7125001	chrX_7125001	RAL-367
1395	chrX	7702928	7702936	chrX	7703336	7703375	jockey	5	432	1.0	0.5	0.8	2.8	447	chrX	7702928	intron	CHES-1-like -	chrX	7703152	intron	CHES-1-like -	chrX	7703375	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-367
1402	chrX	8922326	8922361	chrX	8922760	8922795	jockey	8	431	2.5	4.0	3.2	1.9	469	chrX	8922326	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922795	intron	rdgA +	chrX_8_8920001	chrX_8920001	RAL-367
1405	chrX	9508135	9508167	chrX	9509653	9509685	jockey	5	1518	1.0	1.0	1.0	2.5	1550	chrX	9508135	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-367
1406	chrX	9575802	9575820	chrX	9576126	9576144	mdg3	5	324	4.0	4.0	4.0	1.0	342	chrX	9575802	intron,exon	CG32699 -,CG42395 -	chrX	9575973	intron,intron	CG32699 -,CG42395 -	chrX	9576144	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-367
1412	chrX	10550862	10550887	chrX	10552328	10552354	hobo	6	1465	3.0	1.5	2.2	1.9	1492	chrX	10550862	intron	spri -	chrX	10551608	intron	spri -	chrX	10552354	intron	spri -	chrX_6_10550001	chrX_10550001	RAL-367
1413	chrX	10686068	10686076	chrX	10691205	10691211	roo	5	5137	1.0	3.0	2.0	1.7	5143	chrX	10686068	intron	X11Lbeta +	chrX	10688640	intron	X11Lbeta +	chrX	10691211	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-367
1418	chrX	11312055	11312087	chrX	11319408	11319425	Stalker2	4	7349	1.0	1.0	1.0	2.0	7370	chrX	11312055	intergenic	not near genes	chrX	11315740	intergenic	not near genes	chrX	11319425	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-367
1419	chrX	11633418	11633440	chrX	11640472	11640494	297	6	7053	3.0	1.5	2.2	1.9	7076	chrX	11633418	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640494	intron	Ptp10D +	chrX_6_11635001	chrX_11635001	RAL-367
1427	chrX	12168140	12168160	chrX	12173580	12173602	I-element	6	5442	1.5	3.0	2.2	1.9	5462	chrX	12168140	intron	Ten-a +	chrX	12170871	intron	Ten-a +	chrX	12173602	intron	Ten-a +	chrX_6_12170001	chrX_12170001	RAL-367
1442	chrX	13429461	13429489	chrX	13430610	13430638	jockey	5	1149	3.0	2.0	2.5	1.4	1177	chrX	13429461	intergenic	not near genes	chrX	13430050	intergenic	not near genes	chrX	13430638	intergenic	not near genes	chrX_5_13430001	chrX_13430001	RAL-367
1448	chrX	14105020	14105055	chrX	14114171	14114203	roo	7	9150	5.0	5.0	5.0	1.2	9183	chrX	14105020	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114203	5` UTR	CR44657 +	chrX_7_14105001	chrX_14105001	RAL-367
1452	chrX	14589698	14589705	chrX	14589935	14589937	pogo	4	236	0.0	6.0	3.0	1.0	239	chrX	14589698	intron	CG9413 -	chrX	14589818	intron	CG9413 -	chrX	14589937	intron	CG9413 -	chrX_4_14585001	chrX_14585001	RAL-367
1454	chrX	14636462	14636492	chrX	14641903	14641929	I-element	8	5438	2.5	3.0	2.8	2.1	5467	chrX	14636462	intron	NetA -	chrX	14639196	intron	NetA -	chrX	14641929	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-367
1456	chrX	14818763	14818794	chrX	14823967	14823998	copia	4	5203	2.5	1.5	2.0	1.3	5235	chrX	14818763	intron	rut -	chrX	14821380	intron	rut -	chrX	14823998	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-367
1459	chrX	15273703	15273738	chrX	15274870	15274905	1360	9	1164	2.0	2.5	2.2	2.8	1202	chrX	15273703	intergenic	not near genes	chrX	15274304	intergenic	not near genes	chrX	15274905	intergenic	not near genes	chrX_9_15270001	chrX_15270001	RAL-367
1461	chrX	15413053	15413084	chrX	15417355	15417386	Juan	8	4302	4.5	2.5	3.5	1.8	4333	chrX	15413053	intron	Cngl -	chrX	15415220	intron	Cngl -	chrX	15417386	intron	Cngl -	chrX_8_15415001	chrX_15415001	RAL-367
1462	chrX	15421934	15421952	chrX	15423441	15423458	pogo	4	1507	3.0	1.0	2.0	1.3	1524	chrX	15421934	intron	Cngl -	chrX	15422696	intron	Cngl -	chrX	15423458	intron	Cngl -	chrX_4_15420001	chrX_15420001	RAL-367
1463	chrX	15435687	15435698	chrX	15436120	15436131	rover	4	433	0.0	5.5	2.8	1.1	444	chrX	15435687	intron	Cngl -	chrX	15435909	intron	Cngl -	chrX	15436131	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-367
1484	chrX	18194065	18194099	chrX	18194600	18194625	BS	6	534	3.5	1.5	2.5	1.7	560	chrX	18194065	intron	Frq2 +	chrX	18194345	intron	Frq2 +	chrX	18194625	intron	Frq2 +	chrX_6_18190001	chrX_18190001	RAL-367
1491	chrX	19060411	19060432	chrX	19065195	19065216	Doc	5	4784	1.0	3.0	2.0	1.7	4805	chrX	19060411	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065216	intron	CG14190 +	chrX_5_19060001	chrX_19060001	RAL-367
1497	chrX	19356995	19357018	chrX	19358436	19358459	NOF	6	1441	2.0	1.5	1.8	2.1	1464	chrX	19356995	intron	kek5 +	chrX	19357727	intron	kek5 +	chrX	19358459	intron	kek5 +	chrX_6_19355001	chrX_19355001	RAL-367
1498	chrX	19380162	19380186	chrX	19380403	19380427	pogo	6	241	4.5	1.0	2.8	1.6	265	chrX	19380162	intron	kek5 +	chrX	19380294	intron	kek5 +	chrX	19380427	intron	kek5 +	chrX_6_19380001	chrX_19380001	RAL-367
1499	chrX	19472125	19472138	chrX	19472695	19472704	jockey	4	569	3.0	3.5	3.2	1.0	579	chrX	19472125	intergenic	kek5 +	chrX	19472414	intergenic	kek5 +	chrX	19472704	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-367
1500	chrX	19472143	19472156	chrX	19472692	19472720	jockey	6	560	2.0	3.0	2.5	1.7	577	chrX	19472143	intergenic	kek5 +	chrX	19472432	intergenic	not near genes	chrX	19472720	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-367
1501	chrX	19710072	19710096	chrX	19711858	19711882	S-element	8	1784	1.5	1.5	1.5	3.2	1810	chrX	19710072	intron	meso18E -	chrX	19710977	intron	meso18E -	chrX	19711882	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-367
1510	chrX	20377328	20377349	chrX	20378795	20378816	hobo	7	1467	2.5	2.5	2.5	2.0	1488	chrX	20377328	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_7_20375001	chrX_20375001	RAL-367
1514	chrX	20504141	20504157	chrX	20505650	20505678	transib2	10	1518	1.5	2.0	1.8	3.6	1537	chrX	20504141	intron	RhoGAP19D -	chrX	20504910	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_10_20500001	chrX_20500001	RAL-367
1518	chrX	20940718	20940754	chrX	20942187	20942223	hobo	7	1469	1.0	2.0	1.5	2.8	1505	chrX	20940718	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942223	intergenic	not near genes	chrX_7_20940001	chrX_20940001	RAL-367
1519	chrX	20956987	20957013	chrX	20962429	20962455	I-element	4	5442	0.5	0.5	0.5	2.7	5468	chrX	20956987	intergenic	not near genes	chrX	20959721	intergenic	not near genes	chrX	20962455	intergenic	Ser6 -	chrX_4_20955001	chrX_20955001	RAL-367
1521	chrX	21086129	21086144	chrX	21087159	21087163	jockey	7	1028	3.5	2.0	2.8	1.8	1034	chrX	21086129	intergenic	not near genes	chrX	21086646	intergenic	not near genes	chrX	21087163	intergenic	not near genes	chrX_7_21085001	chrX_21085001	RAL-367
1529	chrX	22522646	22522661	chrX	22525466	22525480	NOF	4	2820	1.5	0.0	0.8	2.2	2834	chrX	22522646	intron	CG17600 +	chrX	22524063	intron	CG17600 +	chrX	22525480	intron	CG17600 +	chrX_4_22520001	chrX_22520001	RAL-367
1531	chrX	22697494	22697517	chrX	22701791	22701814	Juan	5	4296	2.5	2.0	2.2	1.6	4320	chrX	22697494	intron	CR44997 +	chrX	22699654	intron	CR44997 +	chrX	22701814	intron	CR44997 +	chrX_5_22695001	chrX_22695001	RAL-367
1533	chrX	22996308	22996337	chrX	23003542	23003571	roo	12	7233	3.0	1.0	2.0	4.0	7263	chrX	22996308	intron,intron	stnA -,stnB -	chrX	22999940	intron,intron	stnA -,stnB -	chrX	23003571	intron,intron	stnA -,stnB -	chrX_12_22995001	chrX_22995001	RAL-367